##maf version=1 scoring=roast.v3.3
a score=2083.000000
s hg38.chr15_KI270850v1_alt        0 22 +   430880 gaattccagaagcagaagagaa
s panTro5.chr15             63447657 22 + 83230942 gaattccagaagcagaagagaa
i panTro5.chr15             N 0 C 0

a score=547635.000000
s hg38.chr15_KI270850v1_alt       22 2038 +   430880 agaaacaggagaaatatttgaaacaataatgactgagaatttctctcaatgtgagacaccaaaccacagatccaggaagctcagaaaacatcaagcaggataaatgcccacagaaaaactgcatctagccacctaagttacaaactatgaaaaaaaaaaaatcaaaagatgaagagaaaattctggaggaacctagaggg-aaaagaaaacacaccttacctacagagaagtcaagataagaattacatccaacttctcagaaattgtataagcaagag---actggagtgaaatatttaaagtgttgagagagggggaaaaaaaccccaccaccaacctagaattctatattctgtgaaattactcttcataagtgaaggagaaataaacactttctcatacaaaaattgagggaattagttgccagtaaacatgccttgaaagaaatgttaaagaaaagttccttgggaaaaaggaaaatgatacatgtcagtaacttggatgtatatcaagaaaggaagagcactggaataagttaatataaaatgaaaattttattcttcttattcttaatttatctaatagatcaattcagatcaaactgatcaatagatcaaacatcatttgttcaaaataataattagcaataatatatttgattatgtatatattttttgtatataaatgatgtgtatgtttgtatataagtgaaatgaatgataatgatacaagggacaggagggaagaattaggacaattttgttattataagatactcacactacctgtgaagcagtagagtgttatttaaaagtgcacttaaactagttgtaaacgtattgcaaatcctagggaaaacagtacaaaaagaagtataactgatggatatgctaagaagggaaagaaaatggaatcatgaaatgctcaattaaagccacaaaagatggaaacagagtggaagtcaaaaatagaaacaaaaacaaggacaacaaatagaacacagtaacaaatatggtagatattaatcttactatattgatataataatcactttgaatgtcaatggtcaatcaccaattaaaagagagaaattgtcagagtggatcaaaaacaaaacccaactatacactatatgttgcctacaataaactcactttaaatataaagatacatatagattaaaagtaaataaatagaggaaaaacataccatgctaacactaatcaaaagaaagcaggaatagctatatgaatttcagacagagcagcttcaaagcaaggaaatttagcaaggataaagaagggcattacagaatgacaatgggaatccattctccaagaagacataacaatcattaatgtgtatgtgctaacaacagagaatcaaacaccctgaggtaaaaactgatagaagtgtaggaaacatagatggatccactatcatagcaggagacttcaacacgtctctatcagaaatggacagattcagcaggcagaacatcaacaaggacttaacaaggccattaattaactggatataattgatgtctatagacaacttcatcccacaatagcagattacaattcttctcaagcttacatggaacattcatcaagatagaccacattctgggccataaaacacactttaacacatttaaaatcatagaaatcatacaatgtctgcttttatgccacagtggaattaaattataaatcaataacagaaaggtaacaggaaaatcccaaaatatgtggaaattaaacaactttctttctttcttt--------------ccttccttccttcatcccttctttccttccttccc-----cttacccttccttccttccttccttcttccatccttccttctctctctctctttctctctctctttctttctctctctttcttgtgggatacagtaaaaacagtgctatggggaaatgtaaggcattgaatacatatattagaaaagaagacagatcttaaatcaggattctaagtttacacctgaagaaaatagaaaagaagggcaaattaaatccaaagt
s panTro5.chr15             63447679 2031 + 83230942 agaaacaggagaaatatttgaaacaataatgactgagaatttctctcaatgtgagacaccaaaccacagatccaggaagctcagaaaacatcaagcaggataaatgcccacagaaaaactgcatctagccacctaagttacaaactatgaaaaaaaaa---tcaaaagatgaagagaaaattctggaggaacccagaggg-aaaaaaaaacacaccttacctacagagaagtcaagataagaattacatccaacttctcagaaatcgtataagcaagaggagactggagtgaaatatttaaagtgttgagagagggggaaaaaaaccccaccaccaacctagaattctatattctgtgaaattactcttcataagtgaaggagaagtaaacactttctcatacaaaaattgagggaattagttgccagtaaacatgccttgaaagaaatgttaaagaaaatttccttgggaagaaggaaaatgatacatgtcagtaacttggatgtatatcaagaaaggaagagcactggaataagttaatataaaatgaaaattttattcttcttattcttaatttatctaatagatcaattcagatcaaactgatcaatagatcaaacatcatttgttcaaaataataattagcaataatatatttgattatgtatatattttttgtatataaatgatgtgtatgtttgtatataagtgaaatgaatgataatgatacaagggacaggagggaagaattaggacaattttgttattataagatac----actacctgtgaagcagtag--tgttatttaaaagtgcacttcaactagttgtaaacgtattgcaaatcctagggaaaacagtacaaaaagaagtataactgatggatatgctaagaagggaaagaaaatggaatcatgaaatgctcaa----agccacaaaagatggaaacagagtggaagtcaaaaatagaaacaaaaacaaggacaacaaatagaacacagtaacaaatatggtagatattaatcttactatattgatataataatcactttgaatgtcaatggtcaatcaccaattaaaagagagaaattgtcagagtggatcaaaaacaaaacccaactatacactatatgttgcctacaataaactcagtttaaatataaagatacatatagattaaaagtaaataaatagaggaaaaacataccatgctaacactaatcaaaagaaagcaggaatagctatatgaatttcagacagagcagcttcaaagcaaggaaatttagcaaggataaagaagggcattatagaatgacaatgggaatccattctccaagaagacataacaatcattaatgtgtatgtgctaacaacagagaatcaaacaccctgaagtaaaaactgatagaagtgtaggaaacatagatggatccactatcatagcaggagacttcaacacgtctctatcagaaatggacagattcagcaggcagaacatcaacaaggacttaacaaggccattaattaactggatataattgatgtctatagacaacttcatcccacaatagcagattacaattcttctcaagcttacatggaacattcatcaagatagaccacattctgggccataaaacacactttaacacatttaaaatcatagaaatcatacaatgtctgcttttatgccacagtggaattaaattataaatcaataacagaaaggtaacaggaaaatcccaaaatatgtggaaattaaacaactttctttctttctttttctttctttctttccttccttccttcatcccttctttccttccttcccttccccttccccttccttccttccttccttcttccatccttccttctctctctctctttctctctct----------------ttcttgtgggatacagtaaaaacagtgctatggggaaatgtaaggcattgaatacatatattagaaaagaagacagatcttaaatcaggattctaagtttacacctgaagaaaatagaaaagaagggcaaattaaatccaaagt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1     2515873 2047 +  2806052 agaaacaggagaaatatttgaaacaataatgactgagaatttctctcaatgtgagacatcaaaccacagatccaggaagctcagaaaacatcaagcaggataaatgcccacagaaaaactgcatctagccacctaagttacaaactatgaaaaaaaaa--atcaaaagatggagagaaaattctggaggaacccagagggaaaaaaaaaacacaccttacctacagagaagtcaagataagaattacatccaacttctcagaaatcatataagcaagaggagactggagtgaaatatttaaagtgttgagagagggggaaaaaaactccaccaccaacctagaattctatattctgtgaaattactcttcataagtgaaggagaaataaacactttctcatacaaaaattgagggaattagttgccagtaaacatgccttgaaagaaatgttaaagaaaagttccttgggaagaaggaaaatgatacacgtcagtaacttggatgtatatcaagaaaggaagaacactggaataagttactataaaatgaaaattttattcttc---ttcttaatttatctaatagatcaattcagatcaaactgatcaatagatcaaacatcatttgttcaaaataataattagcaataatatatttgattatgtatatattttttgtatataaatgatgtgtatgtttgtatataagtgaaatgaatgataatgatacaagggacaggagggaagaattaggacaattttgttattataagatac----actacctgtgaagcagtagagtgttatttaaaagtgcacttaaactagttgtaaacgtattgcaaatcctagggaaaacagtacaaaaagaagtataactgatggatatgctaagaagggaaagaaaatggaatcatgaaatgctcaattaaagccacaaaagatggaaacagagtggaagtcaaaaatagaaacaaaaacaaggacaacagatagaacacagtaacaaatatggtagatattaatcttactgtattgatataataatcactttgaatgtcaatggtcaatcaccaattaaaagagagaaattgtcagagtggatcaaaaacaaaacccaactatacactatatgttgcctacaataaactcactttaaatataaagatacatatagattaaaagtaaataaacagaggaaaaacataccatgctaacactaatcaaaagaaagcaggaatagctatatgaatttcagacagagcagcttcaaagcaaggaaatttagcaaggataaagaagggcattacagaatgacaaggggaatccattctccaagaagacataacaatcattaatgtgtatgtgctaacaacagagaatcaaacaccctgaggtaaaaactgatagaagtgtaggaaacatagatggatccactatcatagcaggagacttcaacacgtctctatcagaaatggacagattcagcaggcagaacatcaacaaggacttaacaaggccatgaattaactggatataattgatgtctatagacaacttcatcccacaatagcagattacaattcttctcaagcttacatggaacattcatcaagatagaccacattct-ggccataaaacacactttaacacatttaaaatcatagaaatcatacaatgtctgcttttatgccacagtggaattaaattataaatcaataacagaaaggtaacaggaaaatcccaaaatatgtggaaattaaacaactttctttctttctttttctttctttctttccttccttccttcatctcttctttccttccttcccttccccttcc----ccttccttccttccttcttccatccttccttctctctctctctttctctctctctttctttctctctctttcttgtgggatacagtaaaaacagtgctatggggaaatgtaaggcattgaatacacatattagaaaagaagacagatcttaaatcaggattctaagtttacacctgaagaaaatagaaaagaagggcaaattaaatccgaagt
i gorGor5.CYUI01000037v1    N 0 C 0

a score=4404.000000
s hg38.chr15_KI270850v1_alt     2060 12 +   430880 aggtcaggtgct
s panTro5.chr15             63449710 12 + 83230942 aggtcaggtgct
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1     2517920 12 +  2806052 aggtcaggtgct
i gorGor5.CYUI01000037v1    C 0 C 0
s saiBol1.JH378378             37968 12 -   125141 Aggctgggcgta
i saiBol1.JH378378          N 0 C 0

a score=57219.000000
s hg38.chr15_KI270850v1_alt      2072 12 +    430880 gtggctcacact
s panTro5.chr15              63449722 12 +  83230942 gtggctcacact
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2517932 12 +   2806052 gtggctcacact
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22685263 12 - 121039945 gtggcttatgcc
i nomLeu3.chr6              N 0 C 0
s rheMac8.chr7              113280545 12 - 169600520 gtggctcatgcc
i rheMac8.chr7              N 0 C 0
s macFas5.chr7              114625614 12 - 171882078 gtggctcatgcc
i macFas5.chr7              N 0 C 0
s macNem1.NW_012011533v1      3873231 12 +   4820037 gtggctcatgcc
i macNem1.NW_012011533v1    N 0 C 0
s cerAty1.NW_011999477v1      9740730 12 +  10730278 gtggctcatgcc
i cerAty1.NW_011999477v1    N 0 C 0
s chlSab2.chr26               4588792 12 +  58131712 gtggctcatgcc
i chlSab2.chr26             N 0 C 0
s manLeu1.NW_012102632v1      3855337 12 +   4030761 gtggctcatgcc
i manLeu1.NW_012102632v1    N 0 C 0
s colAng1.NW_012114844v1      3987517 12 +   5013933 gtggctcatgcc
i colAng1.NW_012114844v1    N 0 C 0
s saiBol1.JH378378              37980 12 -    125141 gcatctcacccc
i saiBol1.JH378378          C 0 C 0

a score=1815507.000000
s hg38.chr15_KI270850v1_alt      2084 336 +    430880 tgtaatcccagcactttgggaggccgaggtaggtggatca-------------------cgtgaggtcaggagttcaagagaagcctggccaacatggggaaacccagtctctactaaaaatac-aaaaattagttgggcgtggtggctcgcacctgtaatcccagctacttgggaggctgaggc---a---gaattgcttgaacccagcagccagaggttgcagtgagccaagatcgcgccattgcattccagcctgggtgacaagaatgaaactctctctcaaaacaaaaacaaaaacaa----------------acaaacaaaca-aaaacaaaaacaaGTCTTGGAGTTGTAGCTTCCGTGAACTGTGATCCTT
s panTro5.chr15              63449734 336 +  83230942 tgtaatcccagcactttgtgaggccgaggtaggtggatca-------------------cgtgaggtcaggagttcaagagaagcctggccaacatggggaaacccagtctctactaaaaatac-aaaaattagttgggcgtagtggctcacacctgtaatcccagctacttgggaggctgaggc---a---gaattgcttgaacccagcagccagaggttgcagtgagccaagatcgcgccattgcattccagcctgggtgacaagaatgaaactctctctcaaaacaaaaacaaaaacaa----------------acaaacaaaca-aaaacaaaaacaaGTCTTGGAGTTGTAGCTTCCGTGAACTGTGATCCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23024841 334 -  99763055 tgtaatcccagtactttgggaggctgaggcgggtggatca-------------------cctgaggtcaggagttcgagaccagcctggccaacatggcgaaaccccacctctactaaaaatac-aaaaattagttgggcgtggtggcttgcacctgtaattacagctacttgggaggctgaggcagga---gaattgcttgaacccagcagccggaggttgcagtgagccaagatcgtgcaattgtactccagcctgggggacaagaacgaaactctctctcaa---aaaaacaaaaacaa------------------aaacaaaac-aaaacaaaaacaaGCCTTGGAGTTGTAGCCTCCACGAACTGTGATCCTT
i panPan2.chr15             N 0 C 0
s gorGor5.CYUI01000037v1      2517944 352 +   2806052 tgtaatcccagcactttgggaggccgaggtaggtggatca-------------------cgtgaggtcaggagttcaagagaagcctggccaacatggggaaacccagtctctactaaaaatac-aaaaattagttgggcgtggtggctcgcacctgtaatcccagctacttgggaggctgaggc---a---gaattgcttgaacccagcagccagaggttgcagtgagccaagatcgtgccattgcattccagcctgggtgacaagaatgaaactctctctcaaaacaaaaacaaaaacaaacaaacaaaaacaaaaacaaacaaaca-aaaacaaaaacaaGTCTTGGAGTTGTAGCTTCCGTGAACTGTGATCCTT
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22685275 354 - 121039945 tgaaatcccagtactttgggaggccgaggcgggtggatcaggatcgggtggatcaaactcctgaggtcaggagtttgaaaccagcctggccaacatggcaaaaccccatctctactaaaaatac-aaaaattatctgggcgtggtggctcacacctgtaattacagctacttgggaggctgaggcagga---gaattgcttgaaaccagcagccagaggttgcagtgagccaagatcgtgcaattgtactccagcctcggggacaagaacgaaactctctctcaa---aaaaacaaaaacaa------------------aaacaaaaacaaaacaaaaacaaGCCTTGGAGTTGTAGCCTCCACGAACTGTGATCCTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113280557 321 - 169600520 tgtaatcccagtactttgggaggccgaggcgggtggacca-------------------cctgaggtcaggagtttgagaccagcctggccagcatggcgaaaccccatctctactaaaaatacaaaaaattagctgggcgtggtggctagcacctgtaattacagctacttgggaggctgaggc---a---ggagagc-tgaacctgagagctggaagttgcagtgagccaagattatgccattgtactccagcctgggggacaagaacaaaactctctctcaa---aaaaac---------------------------aacaaaac-aaaac-aaaaCGAGCCTTGGAATTGTAGTCTCCGCGAATTGTGAACCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114625626 321 - 171882078 tgtaatcccagtactttgggaggccgaggcgggtggacca-------------------cctgaggtcaggagtttgagaccagcctggccagcatggcgaaaccccatctctactaaaaatacaaaaaattagctgggcgtggtggctagcacctgtaattacagctacttgggaggctgaggc---a---ggagagc-tgaacctgagagctggaagttgcagtgagccaagattatgccattgtactccagcctgggggacaagaacaaaactctctctcaa---aaaaac---------------------------aacaaaac-aaaac-aaaaCGAGCCTTGGAATTGTAGTCTCCGCGAATTGTGAACCTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3873243 326 +   4820037 tgtaatcccagtactttgggaggccgaggcgggtggacca-------------------cctgaggtcaggagtttgagaccagcctggccagcatggcgaaaccccatctctactaaaaatacaaaaaattagctgggcgtggtggctagcacctgtaattacagctacttgggaggctgaggc---a---ggagagc-tgaacctgagaggtggaagttgcagtgagccaagattatgccattgtactccagcctgggggacaagaacaaaactctctctcaa---aaaaacaaca----------------------aaacaaaac-aaaac-aaaaCGAGCCTTGGAATTGTAGTCTCCGCGAATTGTGAACCTT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9740742 326 +  10730278 tgtaatcccagtactttgggaggccgaggcgggtggatca-------------------cctgaggtcaggagtttgagaccagcctggccagcatggtgaaaccccatctttactaaaaatacaaaaaattagctgggcgtggtggctcgcacctgtaattacagctacttgggaggctgaggc---a---ggagagc-tgaacctgggagctggaagttgcagtgagccaagattatgccattgtactccagcctgggggacaagaacaaaactccctctcaa---aaaaacaaca----------------------aaacaaaac-aaaac-aaaaCGAGCCTTGGAATTGTAGTCTCCGCAAATTGTGAACCTT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4588804 326 +  58131712 tgtaatcccagtactttgggaggccgaggcgggtggatca-------------------cctgaggtcaggagtttgagaccagcctggccaacatggcgaaaccccatctctactaaaaatacaaaaaattagctgggcgtggtggctcgcacctgtaattacagctacttgggaggctgaggc---a---ggagagc-tgaacctgggagctggaggttgcagtgagccaagattatgccatcgtactccagcctgggggacaagaacaaaactctctctcaa---aaaaacaaaa----------------------aagcaaaac-aaaac-aaaaCGAGCCTTGGAATTGTAGTCTCCGCGAATTGTGAACCTT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3855349 326 +   4030761 tgtaatcccagtactttgtgaggccgaggcgggtggatta-------------------cctgaggtcaggagtttgagaccagcctggccagcatggcgaaaccccatctctactaaaaatacaaaaaattagctgggcgtggtggctcgcacctgtaattacagctacttgggaggctgaggc---a---ggagagc-tgaacctgggagctggaagttgcagtgagccaagattatgccattttactccagcctgggggacaagaacaaaactctctctcaa---aaaaacaaca----------------------aaacaaaac-aaaac-aaaaCGAGCCTTGGAATTGTAGTCTCCGCGAATTGTGAACCTT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3987529 323 +   5013933 tgtaatcccagtactttgggaggccgaggtgggtggatca-------------------cctgaggtcaggagtttgagaccagcctggccaacatggcaaaa-cccatctctactaaaaatacaaaaaattagctgggcgtggtggctcgcacctgtaa-tacagctacttgggaggctgaggc---a---ggagagc-tgaacccgggagctggaggttgcagtgagccaagattgtgccattgtattccagcctgggggacaagaacaacactctctctc-a---aaaaacaaaa----------------------gaacaaaac-aaaac-aaaaCGAGCCTTGGAGTTGTGGTCTCCGCGAATTGTGATCCTT
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              37992 293 -    125141 tgtaatctcagcacttggggaggctgaggtggatggatca-------------------cctgaggtcaggggttagagaccagcctggccaacatggtgaaaccccatctctactaaaaac---aaaaatta-------------gctcgcacctgtaatcccagctacttgggaggttgaagc---agatgaattgcttgaagccaggaggcagaggttgcagtgagccaagatcgcactattacactccagcctgggcaacaagaacaaaa----ctctcaa---aaaaaa--------------------------aaaccacaa-aaaac-aaaa-aaCCCTTGGCGTTGAAGC------------TGTTGCTT
i saiBol1.JH378378          C 0 C 0

a score=244119.000000
s hg38.chr15_KI270850v1_alt      2420 36 +    430880 GAGAAAGTTAGGAAATCCCCCACTGGGAGTGAACCT
s panTro5.chr15              63450070 36 +  83230942 GAGAAAGTTAGGAAATCCCCCACTGGGAGTGAACCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025175 36 -  99763055 GGGAAAGTTAGGAAATCTCCCACTGGGAGTGAACCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518296 36 +   2806052 GAGAAAGTTAGGAAATACCCCACTGGGAGTGAACCT
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22685629 36 - 121039945 GGGAAAGTTAGGAAATCCCCCACTGGGAGTGAACCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113280878 36 - 169600520 GGGAAAGTTAGGAAATCCCCCACTGGAAATGAACCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114625947 36 - 171882078 GGGAAAGTTAGGAAATCCCCCACTGGAAATGAACCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3873569 36 +   4820037 GGGAAAGTTAGGAAATCCCCCACTGGAAATGAACCT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741068 36 +  10730278 GGGAAAGTTAGGAAATCCCCCACTGGAAATGAACCT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4589130 36 +  58131712 GGGAAAGTTAGGAAATCCCCCACTGGAAATGAACCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3855675 36 +   4030761 GGGAAAGTTAGGAAATCCCCCACTGGAAATGAACCT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3987852 36 +   5013933 GGGAAAGTTAGGAAATCCCCCACTGGAAATGAACCT
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              83759 36 +    125141 CGGAAAGTTAGGAAATCCCCCACTGGGAGTGAAACT
i saiBol1.JH378378          n 0 n 0

a score=41767.000000
s hg38.chr15_KI270850v1_alt      2456 8 +    430880 AGGAAGTA
s panTro5.chr15              63450106 8 +  83230942 AGGAAGTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025211 8 -  99763055 GGGAAGTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518332 8 +   2806052 AGGAAGTA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22685665 8 - 121039945 GGGAAGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113280914 8 - 169600520 GGGAAGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114625983 8 - 171882078 GGGAAGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3873605 8 +   4820037 GGGAAGCA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741104 8 +  10730278 GGGAAGCA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4589166 8 +  58131712 GGGAAGCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3855711 8 +   4030761 GGGAAGCA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3987888 8 +   5013933 GGGAAACA
i colAng1.NW_012114844v1    C 0 C 0
e saiBol1.JH378378              83795 0 +    125141 I

a score=14898.000000
s hg38.chr15_KI270850v1_alt      2464 2 +    430880 GT
s panTro5.chr15              63450114 2 +  83230942 GT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025219 2 -  99763055 GT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518340 2 +   2806052 GT
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22685673 2 - 121039945 GT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113280922 2 - 169600520 GT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114625991 2 - 171882078 GT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3873613 2 +   4820037 GT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741112 2 +  10730278 GT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4589174 2 +  58131712 GT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3855719 2 +   4030761 GT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3987896 2 +   5013933 GT
i colAng1.NW_012114844v1    C 0 C 0
s otoGar3.GL873530            5754129 2 -  36342412 GT
i otoGar3.GL873530          N 0 C 0
e saiBol1.JH378378              83795 0 +    125141 I

a score=169324.000000
s hg38.chr15_KI270850v1_alt      2466 24 +    430880 TCTTCCCTATCTCTGTTATTTTCA
s panTro5.chr15              63450116 24 +  83230942 TCTTCCCTATCTCTGTTATTTTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025221 24 -  99763055 TCTTCCCTATCTCTGTCATTTTCG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518342 24 +   2806052 TCTTCCCTATCTCTGTTATTTTCA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22685675 24 - 121039945 TCTTCCCTATCTCTGTCATTGTCG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113280924 24 - 169600520 TCTTCCCTATCTCTGTCATTTTCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114625993 24 - 171882078 TCTTCCCTATCTCTGTCATTTTCG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3873615 24 +   4820037 TCTTCCCTATCTCTGTCATTTTCG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741114 24 +  10730278 TCTTCCCTATCTCTGTCATTTTCG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4589176 24 +  58131712 TCTTCCCTATCTCTGTCATTTTCG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3855721 24 +   4030761 TCTTCCCTATCTCTGTCATTTTCG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3987898 24 +   5013933 TCTTCCCTATCTCTGTCATTTTCA
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              38285 22 -    125141 TCTTCCCTGTCTC--TTGTTTTTG
i saiBol1.JH378378          C 0 C 0
s otoGar3.GL873530            5754131 24 -  36342412 CTTTCCATCTCTTTGTCATTTTCA
i otoGar3.GL873530          C 0 C 0

a score=7847.000000
s hg38.chr15_KI270850v1_alt      2490 1 +    430880 T
s panTro5.chr15              63450140 1 +  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025245 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518366 1 +   2806052 T
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22685699 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113280948 1 - 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114626017 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3873639 1 +   4820037 T
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741138 1 +  10730278 T
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4589200 1 +  58131712 T
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3855745 1 +   4030761 T
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3987922 1 +   5013933 T
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              38307 1 -    125141 T
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        54224 1 +  11725426 T
i cebCap1.NW_016107334v1    N 0 C 0
s otoGar3.GL873530            5754155 1 -  36342412 C
i otoGar3.GL873530          C 0 C 0

a score=29745.000000
s hg38.chr15_KI270850v1_alt      2491 3 +    430880 CTC
s panTro5.chr15              63450141 3 +  83230942 CTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025246 3 -  99763055 CTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518367 3 +   2806052 CTC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22685700 3 - 121039945 CTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113280949 3 - 169600520 CTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114626018 3 - 171882078 CTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3873640 3 +   4820037 CTC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741139 3 +  10730278 CTC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4589201 3 +  58131712 CTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3855746 3 +   4030761 CTC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3987923 3 +   5013933 CTC
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              38308 3 -    125141 CTC
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        54225 3 +  11725426 CTC
i cebCap1.NW_016107334v1    C 0 C 0
s otoGar3.GL873530            5754156 3 -  36342412 CAC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58184859 3 +  91889043 CTT
i canFam3.chr3              N 0 C 0

a score=1159052.000000
s hg38.chr15_KI270850v1_alt      2494 137 +    430880 CTTGACCTG----GGCTCCCC---TC--------CTTATG-TTTTCTGGCCTGGattct-----cagatgaggaaactgaaactcacaaatatgcagtgac---tcagattatacaactattaaacggcc-cacttggg--cctgccctgggtcttgttacttt
s panTro5.chr15              63450144 137 +  83230942 CTTGACCTG----GGCTCCCC---TC--------CTTATG-TTTTCTGGCCTGGattct-----cagatgaggaaactgaaactcacaaatatgcagtgac---tcagattatacaactattaaatggcc-cacttggg--cctgccctgggtcttgttacttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025249 140 -  99763055 CTTGACCTG----GGCTCCCT---TC--------CTTACG-TTTTCTGGCCTGGATTCTCCAAGcagatgaggaaac--aaacccagagatatgcagtgac---tcagattatacaactattaagtggcc-cacttggg--cctgccctgggtcttgttacttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518370 142 +   2806052 CTTGACCTG----GGCTCCCC---TC--------CTTATG-TTTTCTGGCCTGGATTCTCCAAGcagatgaggaaactgaaactcacaaatatgcagtgac---tcagattatacaactattaaatggcc-cacttggg--cctgccctgggtcttgttacttt
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22685703 140 - 121039945 CTTGACCTG----GGCTCCCC---TC--------CTTATG-TTTTCTGGCCTGGATTCTCCAAGcagatgaggaaac--aaacccagggatatgcagtgac---tcagattatacaactattaagtggcc-cacttggg--cctgccctgggtcttgttacttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113280952 141 - 169600520 CTTGACCTG----GGCTCCCC---TC--------CTCATGTTTTTCTGGCCTGGATTTTCCAAGcagatgaggaaac--aaacccagagacatgcagtgac---tcagattatacaactattaagtggcc-cacttggg--cctgcccggggtcttgttacttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114626021 141 - 171882078 CTTGACCTG----GGCTCCCC---TC--------CTCATGTTTTTCTGGCCTGGATTTTCCAAGcagatgaggaaac--aaacccagagacatgcagtgac---tcagattatacaactattaagtggcc-cacttggg--cctgcccggggtcttgttacttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3873643 141 +   4820037 CTTGACCTG----GGCTCCCC---TC--------CTCATGTTTTTCTGGCCTGGATTTTCCAAGcagatgaggaaac--aaacccagagacatgcagtgac---tcagattatacaactattaagtggcc-cacttggg--cctgcccggggtcttgttacttt
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741142 141 +  10730278 CTTGACCTG----GGCTCCCC---TC--------CTCATGTTTTTCTGGCCTGGATTTTCCAAGcagatgaggaaac--aaacccagagacatgcagtgac---tcagattatacaactattaagtggcc-cacttggg--cctgcccggggtcttgttacttt
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4589204 141 +  58131712 CTTGACCTG----GGCTCCCC---TC--------CTCATGTTTTTCTGGCCTGGATTCTCCAAGcagatgaggaaac--aaacccagagacatgcagtgac---tcagattatacaactattaagtggcc-cacttggg--cctgcccggggtcttgttatttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3855749 141 +   4030761 CTTGACCTG----GGCTCCCC---TC--------CTCATGTTTTTCTGGCCTGGATTCTCCAAGcagatgaggaaac--aaacccagagacatacagtgac---tcagattatgcaactattaagtggcc-cacttggg--cctgcccggggtcttgttacttt
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3987926 143 +   5013933 CTTGACCTG----GGCTCCCC---TC--------CTTATGTTTTTCTGGCCTGGATTCTCCAAGcagatgaggaaactgaaacccagagacatgcagtgac---tcagattatacaactattaagtggcc-cacttggg--cctgcccggggtcttgttacttt
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              38311 140 -    125141 CTTGACCTG----GGCTTCCC---TC--------CTTATA-TTTTCTGGCCTGGATTCTCCAAGcagatgaggaaaccgacactcagagatatgcagtgac---tca---taggcaactattaaacaggcccacttggg--gctgacctgggtcttGTTACTTT
i saiBol1.JH378378          C 0 I 1483
s cebCap1.NW_016107334v1        54228 123 +  11725426 CTTGACCTG----GGCTTCCC---TT--------CTTATG-TTTTCTGGCCTGGATTCTCCAAGCAGATGAGGAAACTGACACTCAGAGATAAGCAGGGAC---TCA---TATG-----------------CACTTGGG--CCTGACCTGTGTCTTGTTACTTT
i cebCap1.NW_016107334v1    C 0 C 0
s otoGar3.GL873530            5754159 138 -  36342412 CTCAAGATA----GGCTCCAT---TA--------CTCCTG-TTTTCTGGCCTGGATTCTCTGAGcagaagtggaaattggaactcagacatatgaaatgac---ccaggtcatataactattaagtggcc-cagttggg--accccc----gtcttgctacttt
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58184862 126 +  91889043 CTTGTCCTA----TGCTCCCT---CCCCCCGGGGCTTCTG-TCCCCTGACCAGGGTTCCCCCTGTGGGTGGGGACAC--------AGAGGCTCACAGAGGC---TCAG------CGACCATCCAGCGACT-GCCCCCAA--ACTTTTCTGTGTT----------
i canFam3.chr3              C 0 I 1
s dasNov3.JH579681             811339 154 +   1727078 cttgagctgcatctgctccccAGTAC--------CTTATG-TTTTCTGAACTGAATTCTCAAAGcagatgggaaaactgaggctcagaaagctaaagtgactggttgggacacacaactattatgcagcc-aagttgggatctgaacccaggtctttctgcttt
i dasNov3.JH579681          N 0 C 0

a score=36945.000000
s hg38.chr15_KI270850v1_alt      2631 4 +    430880 caaa
s panTro5.chr15              63450281 4 +  83230942 caaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025389 4 -  99763055 caaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518512 4 +   2806052 caaa
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22685843 4 - 121039945 caaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113281093 4 - 169600520 caaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114626162 4 - 171882078 caaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3873784 4 +   4820037 caaa
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741283 4 +  10730278 caaa
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4589345 4 +  58131712 caaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3855890 4 +   4030761 caaa
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3988069 4 +   5013933 caaa
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107334v1        54351 4 +  11725426 CAAA
i cebCap1.NW_016107334v1    C 0 C 0
s otoGar3.GL873530            5754297 4 -  36342412 caaa
i otoGar3.GL873530          C 0 I 278
s canFam3.chr3               58184989 3 +  91889043 CAA-
i canFam3.chr3              I 1 C 0
s dasNov3.JH579681             811493 4 +   1727078 caaa
i dasNov3.JH579681          C 0 C 0
e saiBol1.JH378378              38451 1483 -    125141 I

a score=84961.000000
s hg38.chr15_KI270850v1_alt      2635 10 +    430880 gcccacgctc
s panTro5.chr15              63450285 10 +  83230942 gcccacgctc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025393 10 -  99763055 gcccatgctc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518516 10 +   2806052 gcccacgctc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22685847 10 - 121039945 gcccatgctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113281097 10 - 169600520 gcccatgctc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114626166 10 - 171882078 gcccatgctc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3873788 10 +   4820037 gcccatgctc
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741287 10 +  10730278 gcccatgctc
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4589349 10 +  58131712 gcccatgctc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3855894 10 +   4030761 gcccatgctc
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3988073 10 +   5013933 gcccatgctc
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107334v1        54355 10 +  11725426 ACCCACGCTT
i cebCap1.NW_016107334v1    C 0 C 0
s canFam3.chr3               58184992 10 +  91889043 GCCCACATTC
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             811497 10 +   1727078 gcctacactc
i dasNov3.JH579681          C 0 C 0
e otoGar3.GL873530            5754301 278 -  36342412 I
e saiBol1.JH378378              38451 1483 -    125141 I

a score=65370.000000
s hg38.chr15_KI270850v1_alt      2645 17 +    430880 tt--gaca-----------gtgcattattt
s panTro5.chr15              63450295 28 +  83230942 tt--gacacGCTCTTGACAGTGCATTATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025403 15 -  99763055 t----ata-----------gtgcattattt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518526 17 +   2806052 tt--gaca-----------gtgcattattt
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22685857 15 - 121039945 t----ata-----------gtgcattattt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113281107 15 - 169600520 t----ata-----------atgcattattt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114626176 15 - 171882078 t----ata-----------atgcattattt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3873798 15 +   4820037 t----ata-----------atgcattattt
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741297 15 +  10730278 t----ata-----------gtgcattattt
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4589359 15 +  58131712 t----ata-----------gtgcattattt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3855904 15 +   4030761 t----ata-----------gtgcattattt
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3988083 15 +   5013933 t----atc-----------gtgcattattt
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107334v1        54365 17 +  11725426 TT--GACA-----------GTGCGTTATTT
i cebCap1.NW_016107334v1    C 0 C 0
s otoGar3.GL873530            5754579 17 -  36342412 -TT-GACA-----------TTGCATTGTTT
i otoGar3.GL873530          I 278 C 0
s canFam3.chr3               58185002 17 +  91889043 --CTGACA-----------ATGCCTTATTT
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             811507 17 +   1727078 --ttGACA-----------AGGTATTGTTT
i dasNov3.JH579681          C 0 C 0
e saiBol1.JH378378              38451 1483 -    125141 I

a score=8725.000000
s hg38.chr15_KI270850v1_alt      2662 1 +    430880 t
s panTro5.chr15              63450323 1 +  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025418 1 -  99763055 t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518543 1 +   2806052 t
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22685872 1 - 121039945 c
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113281122 1 - 169600520 t
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114626191 1 - 171882078 t
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3873813 1 +   4820037 t
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741312 1 +  10730278 t
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4589374 1 +  58131712 t
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3855919 1 +   4030761 t
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3988098 1 +   5013933 t
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113714834 1 - 132174527 T
i calJac3.chr10             N 0 C 0
s cebCap1.NW_016107334v1        54382 1 +  11725426 T
i cebCap1.NW_016107334v1    C 0 I 166
s otoGar3.GL873530            5754596 1 -  36342412 T
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58185019 1 +  91889043 C
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             811524 1 +   1727078 T
i dasNov3.JH579681          C 0 C 0
e saiBol1.JH378378              38451 1483 -    125141 I

a score=100844.000000
s hg38.chr15_KI270850v1_alt      2663 12 +    430880 gtccatcCATTG
s panTro5.chr15              63450324 12 +  83230942 GTCCATCCATTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025419 12 -  99763055 gtccctcCATTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518544 12 +   2806052 gtccatcCATTG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22685873 12 - 121039945 gtccctcCATTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113281123 12 - 169600520 gtccctcCATTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114626192 12 - 171882078 gtccctcCATTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3873814 12 +   4820037 gtccctcCATTG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741313 12 +  10730278 gtccctcCATTG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4589375 12 +  58131712 gtccctcCATTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3855920 12 +   4030761 gtccctcCATTG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3988099 12 +   5013933 gtccctcCATTG
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113714835 12 - 132174527 ATTCCTCCTTTT
i calJac3.chr10             C 0 C 0
s otoGar3.GL873530            5754597 12 -  36342412 GTCACTCCTTTG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58185020 12 +  91889043 ATCACTCCATGG
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             811525 12 +   1727078 CTCACTCCATTG
i dasNov3.JH579681          C 0 C 0
e cebCap1.NW_016107334v1        54383 166 +  11725426 I
e saiBol1.JH378378              38451 1483 -    125141 I

a score=1155085.000000
s hg38.chr15_KI270850v1_alt      2675 141 +    430880 TCTCCCATTTTACAAAACACA-----TGCCTGGGCCAAGA----TTAAACTTCTTGTTGCCCATTCTTACTTTTGGCTTTT-CCCCACTTCTCTGAGGGTTTACCACACAGTGCCCCTACCACCAAGAGGCCCTCCTTGTCTTCACTGTTG
s panTro5.chr15              63450336 141 +  83230942 TCTCCCATTTTACAAAACACA-----TGCCTGGACCAAGA----TTAAACTTCTTGTTGCCCTTTCTTACTTCTGGCTTTT-CCCCACTTCTCTGAGGGTTTACCACACAGTGCCCCTACCACCAAGAGGCCCTCCTTGTCTTCACTGTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025431 141 -  99763055 CCTCCCATTTTACAAAACACA-----TGCCTGGACCAAGA----TTAAACTTCTTGTTGCCCTTTCTTACTTCTGGCTTTT-CCCCACTTCTCTGAGGGTTTACCACACAGTGCCCCTACCACCATGAGGCCCTTCTTGTCTTCACTGTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518556 141 +   2806052 TCTACCATTTTACAAAACACA-----TGCCTGGGCCAAGA----TTAAACTTCTTGTTGCCCATTCTTACTTCTGGCTTTT-CCCCACTTCTCTGAGGGTTTACCACACAGTGCCCCTACCACCAAGAGGCCCTCCTTGTCTTCACTGTTG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22685885 138 - 121039945 CCTCCCATTTTACAAAACACA-----TGCCTGGACCAAGA----TTAAA---CTTGTTGCCCATTCTTACTTCTGGCTTTT-CCCCACTTCTTGGAGAGTTTACCACACAGTGCCCCTACCACCAAGAGGCCCTCCTTGTCTTCACTGTTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113281135 138 - 169600520 CCTTCCATTTTACAAAACACA-----TGCCTGGGCCAAGA----TTAAACTTCTTGTTGCCCGTTC----TTCTGGCTTTCCCCCCACTTCTCTGAGGGTTTACCACACAGTGCCCCTACCACCAAGAGGCCCTCCTTGTCTTCACTGTTA
i rheMac8.chr7              C 0 I 322
s macFas5.chr7              114626204 138 - 171882078 CCTTCCATTTTACAAAACACA-----TGCCTGGGCCAAGA----TTAAACTTCTTGTTGCCCATTC----TTCTGGCTTTTCCCCCACTTCTCTGAGGGTTTACCACACAGTGCCCCTACCACCAAGAGGCCCTCCTTGTCTTCACTGTTA
i macFas5.chr7              C 0 I 322
s macNem1.NW_012011533v1      3873826 138 +   4820037 CCTTCCATTTTACAAAACACA-----TGCCTGGGCCAAGA----TTAAACTTCTTGTTGCCCATTC----CTCTGGCTTTTCCCCCACTTctctgagggtttaccacacagtgcccctaccaccaagaggccctccttgtcttcactgtta
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741325 137 +  10730278 CCTTCCATTTTACAAAACACA-----TGCCTGGGCCAAGA----TTAAACTTCTTGTTGCCCATTC-----TCTGGCTTTTCCCCCACTTCTCTGAGGGTTTACCACACAGTGCCCCTACCACCAAGAGGCCCTCCTTGTCTTCACTGTTA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4589387 138 +  58131712 CCTTCCATTTTACAAAACACA-----TGCCTGGGCCAAGA----TTAAACTTCTTGTTGCCCATTC----TTCTGGCTTTTCCCCCACTTCTCTGAGGGTTTACCACACAGTGCCCCTACCACCAAGAGGCCCTCCTTGTCTTCACTGTTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3855932 138 +   4030761 CCTTCCATTTCACAAAACACA-----TGCCTGGGCCAAGA----TTAAACTTCTTGTTGCCCATTC----TTCTGGCTTTTCCCCCACTTCTCTGAGGGTTTACCACACAGTGCCCCTACCACCAAGAGGCCCTCCTTGTCTTCACTGTTA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3988111 138 +   5013933 CCTCCCATTTTACAAAACACA-----TGCCTGGGCCAAGA----TTAAACTTCTTGTTGCCCATTC----TTCTGGCTTTTCCCCCACTTCTCTGAGGGTTTACCACACAGTGCCCCTACCACCAAGAGGCCCTCCTTGTCTTCACTGTTG
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113714847 137 - 132174527 TCTCCCATTTTACAAAACGCA-----TGCCTGGGTCAAGA----TAAAA---CTTGTTGCTCATTCTTACTTCCGGCTTTT-CCCCACTTCTTTGAGGGTTTATCACATGGT-ACCCTACCACCAAGAGGCCCTCCTTGTCTCCACGGTTG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107334v1        54549 138 +  11725426 TCTCCCATTTTACAAAACACA-----TGCCTGGGCCAACA----TGAAA---CTTGTTGCTCATTCTTACTTCCGGCTTTT-CCCCACTTCTCTGAGGGTTTGCCACATGGTCCCCCTACCACCAAGAGGCCCTCCTTGTCTCCACGGTTG
i cebCap1.NW_016107334v1    I 166 C 0
s otoGar3.GL873530            5754609 137 -  36342412 TGTCTCACTTCACAAAACATA-----TGCCTGG-CTGAGA----TT-CACTTCCAGATGCTGGTTCTCACTTCTACCTTTC-CCCCACATCTCTGAGGGACTACCACATGGTG--CCTGCTTCCCAGATGTCCTCCTTATCTCCATAGTTG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58185032 107 +  91889043 --TCTTGTTTTACAAGACGTGGGCGTTGCCTGAGCCTACAGCATCTAGTCCTCCTGGGGCCCATCA----------------CCCGGC-------AGGGTCCATCACCTGGTGT-----CTGCCACGGGACCCTCCG--------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             811537 133 +   1727078 TCTCTCATTTCACAGATCTCA-----TGCCTGGGCC-ACA----CTTCTCTTCTTGCTGTCC-TCCTGGTTCCTAGCTTTT-TCCCACTTTTTTGGCTTTTT----CTTGGTG--TCTACCACCGAGATGTCTTCCTCATCTCCATGGTTG
i dasNov3.JH579681          C 0 C 0
e saiBol1.JH378378              38451 1483 -    125141 I

a score=98802.000000
s hg38.chr15_KI270850v1_alt      2816 18 +    430880 AATTAA----CATATGTTAAGG
s panTro5.chr15              63450477 18 +  83230942 AATTAA----CATATGTTAAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025572 18 -  99763055 AATTAA----CATATGTTAAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518697 18 +   2806052 AATTAA----CATATGTTAAGG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686023 18 - 121039945 AATTAA----CATATATTAAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113281595 18 - 169600520 aaTTAA----CATATGTTAAGG
i rheMac8.chr7              I 322 C 0
s macFas5.chr7              114626664 18 - 171882078 aaTTAA----CATATGTTAAGG
i macFas5.chr7              I 322 C 0
s macNem1.NW_012011533v1      3873964 18 +   4820037 aattaa----catatgttaagg
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741462 18 +  10730278 AATTAA----CATATGTTAAGG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4589525 18 +  58131712 AATTCA----CATATGTTAAGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3856070 18 +   4030761 AATTAA----CATATGTTAAGG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3988249 18 +   5013933 AATTAA----CATATGTTAAGG
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113714984  6 - 132174527 AATTAA----------------
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107334v1        54687  6 +  11725426 AATTAA----------------
i cebCap1.NW_016107334v1    C 0 C 0
s otoGar3.GL873530            5754746 22 -  36342412 AGTTTGTACCCACAAGTCAAGT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58185139  9 +  91889043 -------------GAGTCAGAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             811670 22 +   1727078 AATTTATATTCATATGTCAAGC
i dasNov3.JH579681          C 0 C 0
e saiBol1.JH378378              38451 1483 -    125141 I

a score=1104851.000000
s hg38.chr15_KI270850v1_alt      2834 114 +    430880 GACATCTCAAATGCATCCTCCTTGATGAAACTTTTCTTCATTCCAACGCATTC--------A-TAAGGTGCCATCCCTTCCCCTTGCTTGGACCTTGTC-AGCACTGTGCCAGA-GTGGGGGTCT
s panTro5.chr15              63450495 114 +  83230942 GACATCTCAAATGCATCCTCCTTGATGAAACTTTTCTTCATTCCAATGCATCC--------A-TAAGGTGCCATCCCTTCCCCTTGCTTGGACCTTGTC-AGCACTGTGCCAGA-GTGGGGGTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025590 114 -  99763055 GACATCTCAAATGCATCCTCCTTGATGAAACTTTTCTTCATTCCAATGCATCC--------A-TAAGGTGTCATCCTTTCCCCTTGCTTGGACCTTGTC-AGCACTGTGCCACA-GTGGGGGTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518715 114 +   2806052 GACATCTCAAATGCATCCTCCTTGATGAAACTTTTCTTCATTCCAATGCATTC--------A-TAAGGTGCCATCCCTTCCCCTTGCTTGGACCTTGTC-AGCACTGTGCCAGA-GTGGGGGTCT
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686041 114 - 121039945 GACATCTCAAATGCATCCTCCTTGATGAATCTTTTCTTCATTCCAATGCATCC--------A-TAAGGTGTCATCCTCTCCCCTTGCTTGGACCTTGTC-AGCACTGTGCCAGA-GTGGGGGTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113281613 114 - 169600520 GCCATCTCAAATGCATCCTCCTTGATGAAACTTTTCTTCATTCTGATGCATTC--------A-TAAGGTGTCATCCCCTCCCCTTGCTTGGACCTTGTC-AGCACTGTGCCAGA-GTGGGGGTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114626682 114 - 171882078 GCCATCTCAAATGCATCCTCCTTGATGAAACTTTTCTTCATTCTGATGCATTC--------A-TAAGGTGTCATCCCCTCCCCTTGCTTGGACCTTGTC-AGCACTGTGTCAGA-GTGGGGGTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3873982 114 +   4820037 gccatctcaaatgcatcctccttgatgaaacttttcttCATTCTGATGCATTC--------A-TAAGGTGTCATCCCCTCCCCTTGCTTGGACCTTGTC-AGCACTGTGCCAGA-GTGGGGGTCT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741480 114 +  10730278 GCCATCTCAAATGCATCCTCCTTGATGAAACTTTTCTTCATTCTCATGCATTC--------A-TAAGGTGTCATCCCCTCCCCTTGCTTGGACCTTGTC-AGCACTGTGCCAGA-GTGGGGGTCT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4589543 114 +  58131712 GCCATCTCAAATGCATCCTCCTTGATGAAACTTTTCTTCATTCTGATGCATTC--------A-CAAAGTGTCATCCCCTCCCCTTGCTTGGACCTTGTC-AGCACTGTGCCAGA-GTGGGGGTCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3856088 114 +   4030761 GCCATCTCAAATGCATCTTCCTTGATGAAACTTTTCTTCATTCTGATGCATTC--------A-TAAGGTGTCATCCCCTCGCCTTGCTTGGACCTTGTC-AGCACTGTGCCAGA-GTGGGGGTCT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3988267 114 +   5013933 GCCATCTCAAATGCATCCTCCTTGATGAAACTTTTCTTCATTCTGATGCATTC--------A-TAAGGTGTCATCCCCTCCCCTTGCTTGGACCTTGTC-AGCACTGTGCCAGA-GTGGGGGTCT
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113714990 109 - 132174527 --CATCTAAAATGCACCCTCCCTGATGAAACTTTTCTTCATTCCAATGCATCC--------A-TAAGGTGTCATCCCCTCCCCTTGCTTGGATCTT----AGCACTGTGCCAGA-GTGGGCACCT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107334v1        54693 112 +  11725426 --CATCTCAAATGCACCCTCCTTGATGAAACTTTTCTTCATTCCAATGCATCC--------A-TAAGGTGTCATCCCCTCCCCTTGCTTGGATCTTGTC-AGCTCTGTGCTAGA-GTGGGCATCT
i cebCap1.NW_016107334v1    C 0 C 0
s otoGar3.GL873530            5754768 107 -  36342412 GACATCTCAAGTGTATCCTCCTTGCTGAAGCTTTTCTTCATCCTAGTCTTTCC--------A-TGGTGTG---TCCCCTCCCCTTGCTTCAGCCTCTTC-AGGACCGTGCCGGG-GTGGGG----
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90165543 122 + 124595110 GACGTTTACAATGGGCTGTCTCTGATGAAGATCTCTCTCATCCCAGTCCATTCCAGTCTAAG-CAAGGCAGTGTCTCCATCCTTTGCTTGGACTTTCTC-TATACTGTGCCAGG-GTGAGAGGCT
i mm10.chr9                 N 0 I 20
s canFam3.chr3               58185148 108 +  91889043 GACTGCACACA-GCACCCTCCCTGATGAGGCTTTTCTTAACCTCAGCCTATCT--------G-T---GTGACATCCCCTCCCC--AGCTGGACCAC-TC-AGTCCTGGGCCAGGCATCAGGGTCA
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             811692 111 +   1727078 GACATCTCAAATGTGATCTCTTTGATAAATCCTTTCATCATCCCAGCCCATCC--------AGTGGGATG---TCTCTTCCCCCTGCTTGGACTTCCTTGAGCATTTGGCAGGT-GTGGGGGC--
i dasNov3.JH579681          C 0 C 0
e saiBol1.JH378378              38451 1483 -    125141 I

a score=89859.000000
s hg38.chr15_KI270850v1_alt      2948 13 +    430880 TGGGTCTACCACA
s panTro5.chr15              63450609 13 +  83230942 TGGGTCTACCACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025704 13 -  99763055 TGGGTCTACTACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518829 13 +   2806052 TGGGTCTACCACA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686155 13 - 121039945 TGGGTCTACTACG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113281727 13 - 169600520 TGGATCTACCACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114626796 13 - 171882078 TGGATCTACCACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3874096 13 +   4820037 TGGATCTACCACA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741594 13 +  10730278 TGGATCTACCACA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4589657 13 +  58131712 TGGATCTACCACA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3856202 13 +   4030761 TGGATCTACCACA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3988381 13 +   5013933 TGGATCTACCACA
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113715099 13 - 132174527 TGTGTCTCTCACA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107334v1        54805 13 +  11725426 TGGGTCTCTCATA
i cebCap1.NW_016107334v1    C 0 C 0
s otoGar3.GL873530            5754875  7 -  36342412 TGGGTCT------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58185256 13 +  91889043 GGAGTGCCCGACA
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90165665 20 + 124595110 I
e dasNov3.JH579681             811803  0 +   1727078 C
e saiBol1.JH378378              38451 1483 -    125141 I

a score=102759.000000
s hg38.chr15_KI270850v1_alt      2961 21 +    430880 CCCAtttttctg----------ctttgt-----ttt
s panTro5.chr15              63450622 21 +  83230942 CCCAtttttctg----------ctttgt-----ttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025717 26 -  99763055 CCCATTTTTCTG----------TTTtgtgtgtgtgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518842 21 +   2806052 CCCAtttttctg----------ctttgt-----ttt
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686168 21 - 121039945 CCCAtttttctg----------ttttgt-----ttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113281740 17 - 169600520 CCCATTTTTCtg--------------tt-----ttt
i rheMac8.chr7              C 0 I 27
s macFas5.chr7              114626809 18 - 171882078 CCCAtttttctg-------------ttt-----tgt
i macFas5.chr7              C 0 I 22
s macNem1.NW_012011533v1      3874109 29 +   4820037 CCCAtttttctg--tttttttttttttt-----ttt
i macNem1.NW_012011533v1    C 0 I 22
s cerAty1.NW_011999477v1      9741607 31 +  10730278 CCCAtttttctgtttttttttttttttt-----ttt
i cerAty1.NW_011999477v1    C 0 I 26
s chlSab2.chr26               4589670 21 +  58131712 CCCATTTTTCTG----------TTTTTT-----TTT
i chlSab2.chr26             C 0 I 31
s manLeu1.NW_012102632v1      3856215 21 +   4030761 CCCAtttttctg----------tttttt-----ttt
i manLeu1.NW_012102632v1    C 0 I 5661
s colAng1.NW_012114844v1      3988394 21 +   5013933 CCCAtttttctg----------tttttt-----ttt
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113715112 21 - 132174527 CCCACTTTGCTA----------ttttgt-----tct
i calJac3.chr10             C 0 I 11
s cebCap1.NW_016107334v1        54818 21 +  11725426 CCCACTTCACTA----------ttttgt-----tct
i cebCap1.NW_016107334v1    C 0 I 1
e mm10.chr9                  90165665 20 + 124595110 I
e dasNov3.JH579681             811803  0 +   1727078 C
e canFam3.chr3               58185269  0 +  91889043 C
e otoGar3.GL873530            5754882  0 -  36342412 C
e saiBol1.JH378378              38451 1483 -    125141 I

a score=-8892.000000
s hg38.chr15_KI270850v1_alt      2982  3 +    430880 ct-----------------------g
s panTro5.chr15              63450643  3 +  83230942 ct-----------------------g
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025743  3 -  99763055 gt-----------------------g
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518863  3 +   2806052 ct-----------------------g
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686189  3 - 121039945 tt-----------------------g
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113281784  1 - 169600520 -------------------------g
i rheMac8.chr7              I 27 C 0
s macFas5.chr7              114626849  1 - 171882078 -------------------------g
i macFas5.chr7              I 22 C 0
s macNem1.NW_012011533v1      3874160  1 +   4820037 -------------------------g
i macNem1.NW_012011533v1    I 22 C 0
s cerAty1.NW_011999477v1      9741664  1 +  10730278 -------------------------g
i cerAty1.NW_011999477v1    I 26 C 0
s colAng1.NW_012114844v1      3988415 26 +   5013933 ttttttttggtgtgtgtgtgtgtgtg
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107334v1        54840  2 +  11725426 tt------------------------
i cebCap1.NW_016107334v1    I 1 I 10
e mm10.chr9                  90165665 20 + 124595110 I
e calJac3.chr10             113715133 11 - 132174527 I
e dasNov3.JH579681             811803  0 +   1727078 C
e canFam3.chr3               58185269  0 +  91889043 C
e otoGar3.GL873530            5754882  0 -  36342412 C
e manLeu1.NW_012102632v1      3856236 5661 +   4030761 I
e chlSab2.chr26               4589691 31 +  58131712 I
e saiBol1.JH378378              38451 1483 -    125141 I

a score=13247.000000
s hg38.chr15_KI270850v1_alt      2985  9 +    430880 ttttttt-gt
s panTro5.chr15              63450646  9 +  83230942 ttttttt-gt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025746  9 -  99763055 tgtTTCT-GG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518866  9 +   2806052 ttttttt-gt
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686192  9 - 121039945 ttttttt-tg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113281785  9 - 169600520 tggtttt-gG
i rheMac8.chr7              C 0 I 2
s macFas5.chr7              114626850  9 - 171882078 tgtgttt-gg
i macFas5.chr7              C 0 I 2
s macNem1.NW_012011533v1      3874161 10 +   4820037 tgtgtttgGG
i macNem1.NW_012011533v1    C 0 I 2
s cerAty1.NW_011999477v1      9741665  9 +  10730278 tgtgttt-tg
i cerAty1.NW_011999477v1    C 0 I 2
s colAng1.NW_012114844v1      3988441  9 +   5013933 tgtgttt-gG
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113715144  7 - 132174527 ttttttt---
i calJac3.chr10             I 11 C 0
s saiBol1.JH378378              39934  7 -    125141 ttttttt---
i saiBol1.JH378378          I 1483 C 0
s cebCap1.NW_016107334v1        54852  7 +  11725426 ttttttt---
i cebCap1.NW_016107334v1    I 10 C 0
e mm10.chr9                  90165665 20 + 124595110 I
e dasNov3.JH579681             811803  0 +   1727078 C
e canFam3.chr3               58185269  0 +  91889043 C
e otoGar3.GL873530            5754882  0 -  36342412 C
e manLeu1.NW_012102632v1      3856236 5661 +   4030761 I
e chlSab2.chr26               4589691 31 +  58131712 I

a score=7740.000000
s hg38.chr15_KI270850v1_alt      2994 4 +    430880 gggg
s panTro5.chr15              63450655 4 +  83230942 gggg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025755 4 -  99763055 GGGG
i panPan2.chr15             C 0 I 4
s gorGor5.CYUI01000037v1      2518875 4 +   2806052 gggg
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686201 4 - 121039945 gggg
i nomLeu3.chr6              C 0 I 3
s rheMac8.chr7              113281796 4 - 169600520 GGGA
i rheMac8.chr7              I 2 C 0
s macFas5.chr7              114626861 4 - 171882078 ggga
i macFas5.chr7              I 2 C 0
s macNem1.NW_012011533v1      3874173 4 +   4820037 GGga
i macNem1.NW_012011533v1    I 2 C 0
s cerAty1.NW_011999477v1      9741676 4 +  10730278 ggga
i cerAty1.NW_011999477v1    I 2 C 0
s manLeu1.NW_012102632v1      3861897 4 +   4030761 GGga
i manLeu1.NW_012102632v1    I 5661 C 0
s colAng1.NW_012114844v1      3988450 4 +   5013933 GGGG
i colAng1.NW_012114844v1    C 0 I 2
s calJac3.chr10             113715151 2 - 132174527 -gg-
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              39941 2 -    125141 -gg-
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        54859 2 +  11725426 -gg-
i cebCap1.NW_016107334v1    C 0 C 0
s otoGar3.GL873530            5754882 2 -  36342412 -GG-
i otoGar3.GL873530          C 0 C 0
e mm10.chr9                  90165665 20 + 124595110 I
e dasNov3.JH579681             811803 0 +   1727078 C
e canFam3.chr3               58185269 0 +  91889043 C
e chlSab2.chr26               4589691 31 +  58131712 I

a score=137360.000000
s hg38.chr15_KI270850v1_alt      2998 19 +    430880 gt--cagagtctcgctctgtc
s panTro5.chr15              63450659 19 +  83230942 gt--cagagtctcgctctgtc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025763 19 -  99763055 gt--cagagtctcgctctgtc
i panPan2.chr15             I 4 C 0
s gorGor5.CYUI01000037v1      2518879 19 +   2806052 gt--cagagtctcgctctgtc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686208 17 - 121039945 gt--c--attcttgctctgtc
i nomLeu3.chr6              I 3 C 0
s rheMac8.chr7              113281800 21 - 169600520 GTCCcagagtcttgctctgtc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114626865 19 - 171882078 gt--cagagtcttgctctgtc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3874177 19 +   4820037 gt--cagagtcttgctctgtc
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741680 19 +  10730278 gt--cagagtcttgctctgtc
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4589722 19 +  58131712 gt--cagagtcttgctctgtc
i chlSab2.chr26             I 31 C 0
s manLeu1.NW_012102632v1      3861901 19 +   4030761 gt--cagaatcttgctctgtc
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3988456 19 +   5013933 gt--cagagtcttgctctgtc
i colAng1.NW_012114844v1    I 2 C 0
s calJac3.chr10             113715153 19 - 132174527 gt--cagaatctccctctatt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              39943 17 -    125141 gt--cagaatcg--ctctgtt
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        54861 19 +  11725426 gt--cagaatctcgctctgtt
i cebCap1.NW_016107334v1    C 0 C 0
s otoGar3.GL873530            5754884 10 -  36342412 -----------GTGCCCTGTC
i otoGar3.GL873530          C 0 C 0
e mm10.chr9                  90165665 20 + 124595110 I
e dasNov3.JH579681             811803  0 +   1727078 C
e canFam3.chr3               58185269  0 +  91889043 C

a score=1364182.000000
s hg38.chr15_KI270850v1_alt      3017 167 +    430880 atccaggctggagtacagtggcacagtctctgctcactgcaacctccacctcctaggctcaagtgatcctcccacttcagcctccagagtagctgaaactacaggcatacaccacca-cgcctggctaatttttgta-ttttttgtagagatgggatttcaccgtgttg
s panTro5.chr15              63450678 167 +  83230942 atccaggctggagtacagtggcacagtctctgctcactgcaacctccacctcctaggctcaagtgatcctcccacttcagcctccagagtagctgaaactacaggcatacaccaccg-cgcctggctaatttttgta-ttttttgtagagatgggatttcaccatgttg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025782 167 -  99763055 atccaggctggagtacagtggtacaatttctgctcactgcaacctccgcctcccaggctcaagtaatcctcccacctcagcctccggagtagctgagactataggcatacaccaccg-tgcctggctaatttttgta-ttttttgtagagatgggatttcaccatgttg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2518898 167 +   2806052 atccaggctggagtacaatggcacagtctctgctcactgcaacctccacctcctaggctccagtgatcctccaacttcagcctccagagtagctgaaactacaggcatacaccaccg-cgcctggctaatttttgta-ttttttgtagagatgggatttcaccatgttg
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686225 167 - 121039945 atcccggctggagtacagtggtacaatttctgctcactgcaacctccgcctcccaggctcaagtgatcctcccacctcagcccccagagtagctgagactaaaggcatacaccacca-cgcctggctaatttttgta-ttttttgtagagatgggatttcaccatgttg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113281821 167 - 169600520 atccaggctggagtacagtggtgcagtctctgctcactgcaatctccgcctcccaggctcaagtgatcctcccaccttagcctccggagtagctgagactacaggcatacaacaccaccgcctggctaatttttgta-ttttttgtagagata-gatttcaccatgttg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114626884 167 - 171882078 atccaggctggagtacagtggtgcagtctctgctcactgcaatctctgcctcccaggctcaagtgatcctcccaccttagcctccggagtagctgagactacaggcatacaacacca-cgcctggctaatttttgta-ttttttgtagagataggatttcaccatgttg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3874196 167 +   4820037 atccaggctggagtacagtggtgcagtctctgctcactgcaatctccgcctcccaggctcaagtgatcctcccaccttagcctccggagtagctgagactacaggcatacaacacca-cgcctggctaatttttgta-ttttttgtagagataggatttcaccatgttg
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741699 167 +  10730278 atccaggctggagtacagtggtgcagtctctgctcactgcaatctccgcctcccaggctcaagtgatcctcccaccttagcctccggagtagctgagactacaggcatacaccacca-cgcctggctaatttttgta-ttttttgtagagataggatttcaccatgttg
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4589741 167 +  58131712 atccaggctggagtacagtggtgcagtctctgctcactgcaatctccgcctcccaggctcaagtgatcctcccaccttagcctccggagtagctgagactacaggcatacaccacca-cgcctggctaatttttgta-ttttttgtagagataggatttcaccatgttg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3861920 167 +   4030761 atccaggctggagtacagtggtgcagtctctgctcactgcaatctccgcctcccaggctcaagtgatcctcccaccttagcctccggagtagctgagactacaggcatacaccacca-cgcctggctaatttttgta-ttttttgtagagataggatttcaccgtgttg
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3988475 167 +   5013933 atccaggctggagtacagcggtgcaatctctgctcactgcaatctccgcctcccaggctcaagtgatcctcccaccttagcctccagagtagctgagactacaggcatacaccacca-tgcctggctaatttttgta-ttttttgtagagatgggatttcaccatgttg
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113715172 167 - 132174527 acccaggctggagtacagcggcacagtctctgctcattgtaacctccg-ctcccacgctcgagtgatcctcgtacctcaacctctggagttgctaggactacaggcatacaccacca-tgcctggctaatttatgtatttttttatagagacggaatttcaccatgttg
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              39960 166 -    125141 acccagactggagtacagtgtcacaatctctgctcatcgtaacctccg-ctcccaggcttgagtgatcctcccacctcagcctctggagttgctgagactacaggcacacaccacca-tgcctggctaatttatgta-tttttggtagagacggaatttcaccgtgttg
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        54880 166 +  11725426 acccaggctggggtacagtggcgcaatctctgctcattgtaacctctg-ctcccaggctcgagtgatcctcccacctcagcttctggagttgctgagactacaggcatataccacca-tgcctggctaatttatgta-ttttttgtagagacggaatttcaccatgttg
i cebCap1.NW_016107334v1    C 0 C 0
s dasNov3.JH579681             811803  26 +   1727078 -------------TATAGTG-------CCCTGCACAC----------------------------ATTTCTCTA-----------------------------------------------------------------------------------------------
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90165665  20 + 124595110 I
e canFam3.chr3               58185269   0 +  91889043 C
e otoGar3.GL873530            5754894   0 -  36342412 C

a score=706135.000000
s hg38.chr15_KI270850v1_alt      3184 92 +    430880 cccaggctggtctggaactcctgagctcaagcaatctgccctcctcggtcttccaaagtgctgcgattacaggtgtgagccactgcgtccgg
s panTro5.chr15              63450845 92 +  83230942 cacaggctggtctggaactcctgagctcaagcaatctgccctcctcggtcttccaaagtgctgcgattacaggtgtgagccactgcgtccag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23025949 92 -  99763055 cacaggctggtctggaactcctgaactcaagcaatctgccctcctcggtcttccaaagtgctgcgattacaggtgtgagccactgcgtccgg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2519065 92 +   2806052 cacaggctggtctggaactcctgagctcaagcaatctgccctcctcggtcttccaaagtgctgcgattacaggtgtgagccactacgtccgg
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686392 89 - 121039945 cctaggccggtctcgaactc---aactcaagcaatctgccctcctccgtcttccaaaatgctgcgattacaggtgtgagccactgggtccgg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113281988 92 - 169600520 cctagtctggtctccaactcttgagctcaagcagtctgccctcctcggtcttccaaaatactgcgattacaggtgtgagccactgcatccag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114627051 92 - 171882078 cctagtctggtctccaactcttgagctcaagcagtctgccctcctcggtcttccaaaatactgcgattacaggtgtgagccactgcatccag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3874363 92 +   4820037 cctagtctggtctccaactcttgagctcaagcagtctgccctcctcggtcttccaaaatactgcgattacaggtgtgagccactgcatccag
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741866 92 +  10730278 cctagtctggtctccaactcttgagctcaagcagtctgccctcctcggtcttccaaaatactgcgattacaggtgtgagccactgcatccag
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4589908 92 +  58131712 cctagtctggtctccaactcttgagctcaagcagtctgccctcctcggtcttccaaaatactgcgattacaggtgtgagccactgcatccag
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3862087 92 +   4030761 cctagtctggtctccaactcttgagctcaagcagtctgccctcctcggtcttccaaaatactgcgattacaggtgtgagccactgcatccag
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3988642 92 +   5013933 cctagtctggtctccaactctcgagctcaagcagtctgccctcctcggtcttccaaaatgctgcgattacaggtgtgagccactgcatccag
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113715339 92 - 132174527 cccaggctggtctcaaactcctgacctcaagcaatctgccctccttggtcttccaaagtgctgcgattacaggtgggagccactgtgcccgg
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              40126 92 -    125141 cccaggctggtcttgaactcctgacctcaagcaatctgccctccttggtcttccaaagtgctgtgattacaggtgtgagccactgcgtccgg
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        55046 92 +  11725426 cccaggctggtctcgaactcctgacctcaagcaatttgccctccttggtcttccaaagtgctgcgattacaggtgcaagccactgtgcctgg
i cebCap1.NW_016107334v1    C 0 C 0
s otoGar3.GL873530            5754894 13 -  36342412 --------------------------------------CCC----------------ATGCTGCTGT-------------------------
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH579681             811829  8 +   1727078 -----GCTGATCT-------------------------------------------------------------------------------
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90165665 20 + 124595110 I
e canFam3.chr3               58185269  0 +  91889043 C

a score=34920.000000
s hg38.chr15_KI270850v1_alt      3276 3 +    430880 ccA
s panTro5.chr15              63450937 3 +  83230942 ccA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23026041 3 -  99763055 ccA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2519157 3 +   2806052 ccA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686481 3 - 121039945 ccA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113282080 3 - 169600520 ccA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114627143 3 - 171882078 ccA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3874455 3 +   4820037 ccA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741958 3 +  10730278 ccA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4590000 3 +  58131712 ccA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3862179 3 +   4030761 ccA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3988734 3 +   5013933 ccA
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113715431 3 - 132174527 ccA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              40218 3 -    125141 ccA
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        55138 3 +  11725426 ccA
i cebCap1.NW_016107334v1    C 0 C 0
s canFam3.chr3               58185269 3 +  91889043 CCA
i canFam3.chr3              C 0 I 1
e mm10.chr9                  90165665 20 + 124595110 I
e dasNov3.JH579681             811837 0 +   1727078 C
e otoGar3.GL873530            5754907 0 -  36342412 C

a score=16416.000000
s hg38.chr15_KI270850v1_alt      3279 2 +    430880 TT
s panTro5.chr15              63450940 2 +  83230942 TT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23026044 2 -  99763055 TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2519160 2 +   2806052 TT
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686484 2 - 121039945 TT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113282083 2 - 169600520 TT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114627146 2 - 171882078 TT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3874458 2 +   4820037 TT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741961 2 +  10730278 TT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4590003 2 +  58131712 TT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3862182 2 +   4030761 TT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3988737 2 +   5013933 TT
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113715434 2 - 132174527 TT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              40221 2 -    125141 TT
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        55141 2 +  11725426 TT
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       650094 2 +    730879 TT
i aotNan1.NW_018503093v1    N 0 C 0
s canFam3.chr3               58185273 1 +  91889043 T-
i canFam3.chr3              I 1 C 0
e mm10.chr9                  90165665 20 + 124595110 I
e dasNov3.JH579681             811837 0 +   1727078 C
e otoGar3.GL873530            5754907 0 -  36342412 C

a score=2205361.000000
s hg38.chr15_KI270850v1_alt      3281 172 +    430880 TCTCCA-TTTGA--AGGCAAGGATGGTGTCTTATCCACTGTCCTGGACTTTGGAGCACCTAGTGCCCCCTCACAGTTAGTAGCcaagggtcacataccaaatgccatg--gactaggcag---gtaacataaatgagcaaacgaggtgggtagggaGACAGatttttcctgaaacatggg
s panTro5.chr15              63450942 172 +  83230942 TCTCCA-TTTGA--AGGCAAGGATGGTGTCTTATCCACTGTCCTGGACTTTGGAGCACCTAGTGCCCCCTCACACTTAGTAGCcaagggtcacataccgaatgccatg--gactaggcag---gtaacataaatgagcaaacgaggtgggtagggaGACAGatttttcctgaaacatggg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23026046 172 -  99763055 TCTCCA-TTTGA--AGGCAAGGATGGTGTCTTATCCACTGTCCTGGACTTTGGAGCACCTAGTGCCCCCTCACACTTAGTAGCcaagggtcacataccgaatgccatg--gactaggcag---gtaacataaatgagcaaacgaggtgggtagggaGACAGatttttcctgaaacatggg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2519162 172 +   2806052 TCTCCA-TTTGA--AGGCAAGGATGGTGTCTTATCCACTGTCCTGGACTTTGGAGCACCTAGTGCCCCCTCACAGTTAGTAGCcaagggtcacataccgaatgccatg--gactaggcag---gtaacataaatgagcaaacaaggtgggtagggGGACAGatttttcctgaaacatggg
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686486 172 - 121039945 TCTCCA-TTTGA--AGGCAAGGATGGTGTCTTACCCACTTTCCTGGACTTTGGAGCACCTAGTGCCCCCTCACAGTTAGTAGCcaagggtcacataccgaatgccatg--gagtaggcag---gtaacataaatgagcaaacaaggtgggtagggaGACAGatttttcctgaaacatggg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113282085 172 - 169600520 TCTCCA-TATGA--AGGCAAGGATGGTGTCTTATCCACTTTCCTGGACTTTGGAGCACCTAGTGCACCCTCACAGTTAGTAGCcaagggtcacataccaaatgccatg--gactaggcag---gtaatgtaaatgagcaaacgaggtgggcagggaGACAGatttttcctgaaacgtggg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114627148 172 - 171882078 TCTCCA-TATGA--AGGCAAGGATGGTGTCTTATCCACTTTCCTGGACTTTGGAGCACCTAGTGCACCCTCACAGTTAGTAGCcaagggtcacataccaaatgccatg--gactaggcag---gtaatgtaaatgagcaaacgaggtgggcagggaGACAGatttttcctgaaacgtggg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3874460 172 +   4820037 TCTCCA-TTTGA--AGGCAAGGATGGTGTCTTATCCACTTTCCTGGACTTTGGAGCACCTAGTGCACCCTCACAGTTAGTAGCcaagggtcacataccaaatgccatg--gactaggcag---gtaatgtaaatgagcaaacgaggtgggcagggaGACAGatttttcctgaaacgtggg
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9741963 172 +  10730278 TCTCCA-TTTGA--AGGCAAGGATGGTGTCTTATCCACTTTCCTGGACTTTGGAGCACCTAGTGCACCCTCACAGTTAGTAGCcaagagtcacataccaaatgccatg--gactaggcag---gtaatgtaaatgagcaaacaaggtgggcagggAGACAGatttttcctgaaacgtggg
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4590005 172 +  58131712 TCTCCA-TTTGA--AGGCAAGGATGGTGTCTTATCCACTTTCCTGGACTTTGGAGCACCTAGTGCACCCTCACAGTTAGTAGCcaagggtcacataccaaatgccatt--gactaggcag---gtaatgtaaatgagcaaacaaggtgggcagggAGACAGatttttcctgaaacgtggg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3862184 172 +   4030761 TCTCCA-TTTGA--AGGCAAGGATGGTGTCTTATCCACTTTCCTGGACTTTGGAGCACCTAGTGCACCCTCACAGTTAGTAGCcaagggtcacataccaaatgccatg--gactaggcag---gtaatgtaaatgagcaaacaaggtgggcagggAGACAGatttttcctgaaacgtggg
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3988739 172 +   5013933 TCTCCA-TTTGA--AGGCAAGGATGGTGTCTTATCCACTTTCCTGGACTTTGGAGCACCTAGTGCACCCTCACAGTTAGTAGCcaagggtcacataccaaatgccatg--gactaggcag---gtaatgtaaatgagcaaacaaggtgggcagggAGACAGatgtttcctgaaacgtggg
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113715436 172 - 132174527 TCTCTA-TTTGA--AGGCAAGGCTGGTGTGTTATCCACTTTCCTGGACATTGGAGCACCTTGTGCCCTCTCACAGTTAGTAGCCAAGGGTCACATACTGGATGCCATG--GACTAGGCAG---GTAGCGGAAATGAGCAAACGAAGTGGGTAGGGAGACAGatttttcttgaatcatggc
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              40223 172 -    125141 TCTCTA-TTTGA--AGGCAAGGATGGTGTCTTATCCACTTTCCTGGACATTGGAGCACCTTGTGCCCACTCTCAGTTAGTAGCCAACAGTCACATACTGGATGCCATG--GACTAGGCAG---GTAGCGGAAATGAGCAAACAAGGTGGGTAGGGAGACAGatttttcttgaatcatggc
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        55143 172 +  11725426 TCTGTA-TTTGA--AGGCAAGGATGGTGTCTTATCCACTTTCCTGGACATTGGATCACCTTGTCCCCTCTCATAGTTAGTAGCCAAGGGTCACATACTGGATGCCATG--GACTAGGCAG---GTAGTGGAAATGAGCAAACAAGGCGGGTAGGGAGACAGatttttcttgaatcgtggc
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       650096 172 +    730879 TCTCTA-TTTGA--AGGCAAGGATGGTGTCTTATCCACTTTCCTGGACATTGGAGCACCTTGTGCCCTCTCACAGTTAGTAGTCAAGGGTCACATACTGGATGCCATG--GACTAGGCAG---GTAGCAGAAATGAGCAAACGAGGTGGGTAGGGAGACAcatttttcttgaatcatggc
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5754907 159 -  36342412 -------TTCAA--AGGCAAGCATGATGTCTCATACATTTTCCTGGACTTTGGAGCAATTAATGCTCCCTCACGATTAGTAACCCAgagtcacataccaaatgccatg--caccaggtag---gtaacataaatgagcgaaaaagtctggtagggaGACACATTTTTCTTGAA-------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90165685 175 + 124595110 TCTCTC-TTTGATGGGGTTAGGGTAGTGTCTTTTGCATTTCCCTGGACTTTGGAACACCAAATGCTTCCAAACAGTTAGTATCCAGGG--CATACGCCAGGTGTCGTG--AACCCAGCATTTCATAACAGAAATGAGCAAACAAGGCTGGTGGAAAGACAGATTTGTTTAGAGATAATGG
i mm10.chr9                 I 20 C 0
s canFam3.chr3               58185274 143 +  91889043 TCCCTGTTTTGA--AGGGAAGGATGGTGTCTCATACATTTTCCTGGACTTCGGAGCAACTACCGCTCCCTCACAATCAGTAGCCCAGTGTGACACATCAGGTGCCGTC--CCCCAGGGCA---GCAAC----ATGGGTGAACAAGCCTGGCAGG--------------------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             811837 162 +   1727078 ----CT-TTTGA--GGGCAAGGATGCTATCTTATACATTTTCCTAGTCTTTGGAGTACCTAATACTCCCTCTCAATCAGTAGCCAAGGGTCATGCATAACTGCCCATGGAGACCAGGTAG-----ACCCTAAATGAACAAATATGCCTGGTGGGGAGATGA------CTTGAAACGTGGA
i dasNov3.JH579681          C 0 I 289

a score=3124438.000000
s hg38.chr15_KI270850v1_alt      3453 268 +    430880 gcttcttggcccatctcttg-ttttcccacttttgttagagactcagttctttactgagtgaaaggaaacacaagcatg----------------------atgggaaaggga------gcctacttgcagccacagtgctgggaatgaatagggagtggtggggactgag--gac----cgg-------ggagcat------------aggcccttcctaaagggaactcactgctcca-ccccagccacttctgccagggagcaatttaagcctgacatggatggatgataagacttttcaagaaaagctgaaaattgaga
s panTro5.chr15              63451114 268 +  83230942 gcttcttggcccatctcttg-ttttcccacttttgttagagactcagttctttactgagtgagaggaaacacaagcatg----------------------atgggaaaggga------gcctacttgcagccacagtgctgggaatgaatagggagtggtggggactgag--gac----cgg-------ggagcat------------aggcccttcctaaagggaactcactgctcca-ccccagccacttctgccagggagcaatttaagcctgacatggatggatgataagacttttcaagaaaagctgaaaattgaga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23026218 268 -  99763055 gcctcttggcccatctcttg-ttttcccacttttgttagagacTCAGTTctttactgagtgaaaggaaacacaagcatg----------------------atgggaaaggga------gcctacttgcagccacagtactcggaatgaatatggagtggtggggactgag--gac----cgg-------ggagcat------------aggcccttcctaaagggaactcactgctcca-ccccagccacttctgccagggagcaatttaagcctgacatggatggatgataagacttttcaagaaaagctgaaaattgaga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2519334 268 +   2806052 gcttcttggcccatctcttg-ttttcccacttttgttagagactcagttctttactgagtgaaaggaaacacaagcatg----------------------atgggaaaggga------gcctacttgcagccacagtgctgggaatgaatagggagtggtggggactgag--gac----cgg-------ggagcat------------aggcccttcctaaagggaactcactgctcca-ccccagccgcttctgccagggagcaatttaagcctgacatggatggatgataagacttttcaagaaaagctgaaaattgaga
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686658 268 - 121039945 gcttcttggcccatctcttg-ttttcccacttttgttagagactcagttctttactgagtgaaaggaaacacaagcatg----------------------atgggaaaggga------gcctacttgcagccacagtactgggaatgaatagggagtggtggggactgag--gac----cgg-------ggagcat------------aggcccatcctaaagggaactcactgctcca-ccccagccacttctgccagggagcaatttaagcctgacatggatggatgataagacttttcaagaaaagctgaaaattgaga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113282257 268 - 169600520 gcctcttggcccatctcttg-ttttcccacttttgttagagacTCAGTTctttactgagtgaaaggaaacacaagcatg----------------------atgggaaaggga------gcctacttgcagccacagtactgggaatgaatagggagtggtggggactgag--gac----tgg-------ggagcat------------aggcccttcctaaagggaactcactgctcca-ccctggccacttctgccaggcagaaatttaagcctgacatggatggatgataagacttttcaagaaaagctgaaaattgaga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114627320 268 - 171882078 gcctcttggcccatctcttg-ttttcccacttttgttagagactcagttctttactgagtgaaaggaaacacaagcatg----------------------atgggaaaggga------gcctacttgcagccacagtactgggaatgaatagggagtggtggggactgag--gac----tgg-------ggagcat------------aggcccttcctaaagggaactcactgctcca-ccctggccacttctgccaggcagaaatttaagcctgacatggatggatgataagacttttcaagaaaagctgaaaattgaga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3874632 268 +   4820037 gcctcttggcccatctcttg-ttttcccacttttgttagagactcagttctttactgagtgaaaggaaacacaagcatg----------------------atgggaaaggga------gcctacttgcagccacagtactgggaatgaatagggagtggtggggactgag--gac----tgg-------ggagcat------------aggcccttcctaaagggaactcactgctcca-ccctggccacttctgccaggcagaaatttaagcctgacatggatggatgataagacttttcaagaaaagctgaaaattgaga
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9742135 280 +  10730278 gcctcttggcccatctcttg-ttttcccacttttgttagagactcagttctttactgagtgaaaggaaacacaagcatg----------------------atgggaaaagga------gcctacttgcagccacagtactgggaatgaatagggagtggtggggactgag--gac----tgg-------ggagcccttcctaaagggaaggcccttcctaaagggaactcactgctcca-ccctggccacttctgccaggcagaaatttaagcctgacatggatggatgataagacttttcaagaaaagctgaaaattgaga
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4590177 268 +  58131712 gcctcttggcccatctcttg-ttttcccacttttgttagagactcagttctttactgagtgaaaggaaacacaagcatg----------------------atgggaaaggga------gcctacttgcagccacagtactgggaatgaatagggaatggtggggactgag--gac----tgg-------ggagcat------------aggcccttcctaaagggaactcactgctcca-ccctggccacttctgccaggcagaaatttaagcctgacatggatggatgataagacttttcaagaaaagctgaaaattgaga
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3862356 268 +   4030761 gcctcttggcccatctcttg-ttttcccacttttgttagagactcagttctttactgagtgaaaggaaacacaagcatg----------------------atgggaaaggga------gcctacttgcagccacagtactgggaatgaatagggagtggtggggactgag--gac----tgg-------ggagcat------------aggcccttcctaaagggaactcactgctcca-ccctggccacttctgccaggcagaaatttaagcctgacatggatggatgagaagacttttcaagaaaagctgaaaattgaga
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3988911 268 +   5013933 gcctcttggcccatctcttg-ttttcccacttttgttagagacTCAGTTCTTTACTGAGTGAAAGGAaacacaagcatg----------------------atgggaaaggga------gcctacttgcagccacagtattgggaatgaatagggagtggtggggactgag--gac----tgg-------ggagcat------------aggcccttcctaaagggaactcactgctcca-ccctggccacttctgctaggcaggaatttaaacctgacatggatggatgataagacttttcaagaaaagctgaaaattgaga
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113715608 263 - 132174527 gcctcttggcctgtctcttg-ttctctcacttttgt--gagactcagttctttactgagtgaaaggaaacacaagcatg----------------------ctgtgaaagcaa------gtgtacaggcagacacagtgctgggaacgaatagggagtggtggcgactgag--gac----c-g-------ggagcac------------agccccttcctaaagggaacgcactgctcca-ccctggccacttctgccaggaaggaatttaagcctgacatt--cacatgataagacttttccagaaaagctgaaagttgaga
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              40395 263 -    125141 gcctcttggcccgtctcttg-ttttctcacttttgt--gagactcagttctttactgagtaaaaggaa--acaagcatg----------------------ctgtgaaagcga------gcgtacaggcagccacagtgctgggaacgaatagggagtggtggggactgag--gac----c-g-------ggagcac------------agccccttcctggagggaacgcactgctcca-ccctggccacttctgccaggaaggaatttaagcctgacatggacagatgataagacttttcaggaagagctgaaagttgaga
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        55315 265 +  11725426 gcctcttggcccgtctcttg-ttttctcacttttgt--gagactcagttctttactgagtgaaagggaacacaggcatg----------------------ctgtgaaagcga------gtgtacaggcagccacagtgctgggaacgaatagggagtggtggggactgag--gac----c-g-------ggagcac------------agctccttcctaaaggaaacgcactgctcca-ccccggccacttctgccaggaaggaatttaagcctgacatggacagatgataagacttttcaggaaaagctgaaagttgaga
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       650268 266 +    730879 gcctcttggcccgtctcttg-ttttctcacttttgt--gcgactcagttctttactgagtgaaaggaaacacaagcatg----------------------ctgtgaaagcga------gcgtacaggcagccacagtgctgggaacgaatagggagtggtggggactgag--gac----c-g-------ggagcac------------agccccttcctaaagggaacgcgctgctccacccccggccactcctgccaggaaggaatttaagcctgacatggacacatgataagacttttcaagaagggctgaaagttgaga
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5755066 251 -  36342412 ------------ATCTCTTG-TTTTTCCATTTTTGTTAGAGAGTCAGTTCTTTACTGAGTGAGAAAAAACA-GAGCCCG----------------------ATGCCAGTGGGC-----TGTCCACACTCATCCTCAGGGTTGGGAAATGATAGGgag-------gactggt--gacatctcag-------tgagcat------------agccctctcctggaagg-gttcactgcttga-ctctagtgccttctgccaggtaggaatttaggcctgatgtgtatggatgat-agatttttcaaggaaagctgaaaactgaga
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90165860 258 + 124595110 GC-TCTTGGCCCGTTTATTGCTTTTTCCACCTTGGTTAGAGATGAAGTTCTTCACTGA---------AATACATGCACG----------------------ATACTGAACAGGCAACCTGTCTATACTCAGCCTCAGTGTCTGCCAC-AGTAGTAAGTAgtggggacagagacaga----tgg-------ggagcac------------agg----tttcaaagg--actcactgcttct-ctccagccccctttgacaggtatggatttaggtctgatgtgtgtagataacaaaac--ttcaaggaaggcttggaatggaaa
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58185417 273 +  91889043 ------TGGCCCATCTCCTG-TTTCTCCATTTCTGTTAGAAATTCAGTTCTTTAGTCACTGAAAGACAGCATAACTAGGAGGCAGTCAGTGGCAGTTGGGAATAGAAGAGGGA------GCC----------------GTGGGGACTGGGCGGGGGGTGGGAGGGGGTGGG--GGG----CAGCCAGGGTGGAGTAC------------AGGCCCTCTCCCAGGGG--CTCCTTGCTCTA-CCGCAGCCACTTCTGCTGGGTGGAGATTGAGGTCTGACATGTATGAATGATAAGGCTTTTCGGAGAAAGCTGAAAATTGAAA
i canFam3.chr3              C 0 C 0
e dasNov3.JH579681             811999 289 +   1727078 I

a score=105843.000000
s hg38.chr15_KI270850v1_alt      3721  8 +    430880 tt-----tttgta
s panTro5.chr15              63451382  8 +  83230942 tt-----tttgta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23026486  8 -  99763055 tt-----tttgta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2519602  8 +   2806052 tt-----tttgta
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686926  8 - 121039945 tt-----tttgta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113282525  8 - 169600520 tt-----tttgta
i rheMac8.chr7              C 0 I 322
s macFas5.chr7              114627588  8 - 171882078 tt-----tttgta
i macFas5.chr7              C 0 I 322
s macNem1.NW_012011533v1      3874900  8 +   4820037 tt-----tttgta
i macNem1.NW_012011533v1    C 0 I 321
s cerAty1.NW_011999477v1      9742415  8 +  10730278 tt-----tttgta
i cerAty1.NW_011999477v1    C 0 I 316
s chlSab2.chr26               4590445  8 +  58131712 tt-----tttgta
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3862624  8 +   4030761 tt-----tttgta
i manLeu1.NW_012102632v1    C 0 T 5209
s colAng1.NW_012114844v1      3989179  8 +   5013933 tt-----tttgta
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113715871  8 - 132174527 tt-----tttgta
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              40658  8 -    125141 tt-----tttgta
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        55580  8 +  11725426 tt-----tttgta
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       650534  8 +    730879 tt-----tgtgta
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5755317  8 -  36342412 tt-----tttgta
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90166118 13 + 124595110 ttgtgtgtgtgtg
i mm10.chr9                 C 0 I 7
s canFam3.chr3               58185690  8 +  91889043 TT-----TTTGGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             812288  8 +   1727078 tg-----tttaaa
i dasNov3.JH579681          I 289 C 0

a score=124204.000000
s hg38.chr15_KI270850v1_alt      3729 8 +    430880 caagatca
s panTro5.chr15              63451390 8 +  83230942 caagatca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23026494 8 -  99763055 caagatca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2519610 8 +   2806052 caagatca
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686934 8 - 121039945 caagatca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113282855 8 - 169600520 caagatca
i rheMac8.chr7              I 322 C 0
s macFas5.chr7              114627918 8 - 171882078 caagatca
i macFas5.chr7              I 322 C 0
s macNem1.NW_012011533v1      3875229 8 +   4820037 caagatca
i macNem1.NW_012011533v1    I 321 C 0
s cerAty1.NW_011999477v1      9742739 8 +  10730278 caagatca
i cerAty1.NW_011999477v1    I 316 C 0
s chlSab2.chr26               4590453 8 +  58131712 caagatca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3857423 8 +   4030761 CAAGATCA
i manLeu1.NW_012102632v1    T 5209 C 0
s colAng1.NW_012114844v1      3989187 8 +   5013933 caagatca
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113715879 8 - 132174527 caagattg
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              40666 8 -    125141 caagatca
i saiBol1.JH378378          C 0 I 313
s cebCap1.NW_016107334v1        55588 8 +  11725426 caagatca
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       650542 8 +    730879 caagatca
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5755325 8 -  36342412 taagatca
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90166138 8 + 124595110 aaagatca
i mm10.chr9                 I 7 C 0
s canFam3.chr3               58185698 8 +  91889043 TAAGATCA
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             812296 8 +   1727078 aaaaatca
i dasNov3.JH579681          C 0 C 0

a score=6821.000000
s hg38.chr15_KI270850v1_alt      3737 1 +    430880 -t
s panTro5.chr15              63451398 1 +  83230942 -t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23026502 1 -  99763055 -t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2519618 1 +   2806052 -t
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686942 1 - 121039945 -t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113282863 1 - 169600520 -t
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114627926 1 - 171882078 -t
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3875237 1 +   4820037 -t
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9742747 1 +  10730278 -t
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4590461 1 +  58131712 -t
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3857431 1 +   4030761 -T
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3989195 1 +   5013933 -t
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113715887 1 - 132174527 -t
i calJac3.chr10             C 0 I 318
s saiBol1.JH378378              40987 1 -    125141 -t
i saiBol1.JH378378          I 313 I 1
s cebCap1.NW_016107334v1        55596 1 +  11725426 -t
i cebCap1.NW_016107334v1    C 0 I 263
s aotNan1.NW_018503093v1       650550 1 +    730879 -t
i aotNan1.NW_018503093v1    C 0 I 299
s otoGar3.GL873530            5755333 1 -  36342412 -t
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90166146 1 + 124595110 -t
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58185706 1 +  91889043 -T
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             812304 1 +   1727078 g-
i dasNov3.JH579681          C 0 C 0

a score=23480.000000
s hg38.chr15_KI270850v1_alt      3738 3 +    430880 gtg
s panTro5.chr15              63451399 3 +  83230942 gtg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23026503 3 -  99763055 gtg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2519619 3 +   2806052 gtg
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686943 3 - 121039945 gtg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113282864 3 - 169600520 gtg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114627927 3 - 171882078 gtg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3875238 3 +   4820037 gtg
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9742748 3 +  10730278 gtg
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4590462 3 +  58131712 gtg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3857432 3 +   4030761 GTG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3989196 3 +   5013933 gtg
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              40989 2 -    125141 at-
i saiBol1.JH378378          I 1 C 0
s otoGar3.GL873530            5755334 3 -  36342412 gtg
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90166147 3 + 124595110 ata
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58185707 3 +  91889043 GTA
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             812305 3 +   1727078 gtg
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       650551 299 +    730879 I
e calJac3.chr10             113715888 318 - 132174527 I
e cebCap1.NW_016107334v1        55597 263 +  11725426 I

a score=64162.000000
s hg38.chr15_KI270850v1_alt      3741 4 +    430880 attc
s panTro5.chr15              63451402 4 +  83230942 attc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23026506 4 -  99763055 attc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2519622 4 +   2806052 attc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686946 4 - 121039945 attc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113282867 4 - 169600520 attc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114627930 4 - 171882078 attc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3875241 4 +   4820037 attc
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9742751 4 +  10730278 attc
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4590465 4 +  58131712 attc
i chlSab2.chr26             C 0 I 315
s manLeu1.NW_012102632v1      3857435 4 +   4030761 ATTC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3989199 4 +   5013933 attc
i colAng1.NW_012114844v1    C 0 I 598
s calJac3.chr10             113716206 4 - 132174527 attc
i calJac3.chr10             I 318 C 0
s saiBol1.JH378378              40991 4 -    125141 attc
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        55860 4 +  11725426 attc
i cebCap1.NW_016107334v1    I 263 C 0
s aotNan1.NW_018503093v1       650850 4 +    730879 attc
i aotNan1.NW_018503093v1    I 299 C 0
s otoGar3.GL873530            5755337 4 -  36342412 attc
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90166150 4 + 124595110 attt
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58185710 4 +  91889043 ATTT
i canFam3.chr3              C 0 I 23
s dasNov3.JH579681             812308 4 +   1727078 attt
i dasNov3.JH579681          C 0 I 2

a score=109882.000000
s hg38.chr15_KI270850v1_alt      3745 9 +    430880 -ctaaacatt
s panTro5.chr15              63451406 9 +  83230942 -ttaaacatt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23026510 9 -  99763055 -ttaaacatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2519626 9 +   2806052 -ttaaacatt
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686950 9 - 121039945 -ttaaacatt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113282871 9 - 169600520 -ttaaacatt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114627934 9 - 171882078 -ttaaacatt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3875245 9 +   4820037 -ttaaacatt
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9742755 9 +  10730278 -ttaaacatt
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4590784 9 +  58131712 -ttcaacatt
i chlSab2.chr26             I 315 C 0
s manLeu1.NW_012102632v1      3857439 9 +   4030761 -TTAAACATT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3989801 9 +   5013933 -TTAAACATT
i colAng1.NW_012114844v1    I 598 C 0
s calJac3.chr10             113716210 9 - 132174527 -ttaaacatt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              40995 9 -    125141 -ttaaacatt
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        55864 9 +  11725426 -ttaaacact
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       650854 9 +    730879 -ttaaacatt
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5755341 9 -  36342412 -taaaacact
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90166154 9 + 124595110 -ttagacatt
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58185737 9 +  91889043 -tttaagatt
i canFam3.chr3              I 23 I 193
s dasNov3.JH579681             812314 9 +   1727078 cacagaaat-
i dasNov3.JH579681          I 2 C 0

a score=5942633.000000
s hg38.chr15_KI270850v1_alt      3754 497 +    430880 ggcaattgact---------aaaacattt----ttcaatatttgtgtcagcc--aaaacaaaccaA-AAAA---------------------------------------TCAAT-AACTGATCAACACAAGCAAAT-----------------CTGCA------------CGCTGTGGTTGAGGAGTTGTAGTCCCATATGTCCTTATtaggatgtcagagcaagaagtcaccttaaatcatccagtccGGTGGTTTCTGAATGCCAGCCtctgaactggctagatcagaatccctgggaaggtctagaaaaacacagaaaatacacattctagggcccccagagccctggatctgtggaactagaatctctgggctgggtcctgggcatctgcagtttttcagagct---ctccacgtactgctgatgaccagccaggttCACTCCCAGTGGGGgatt-tcctaacttt-cctgaggatcacagctcccggaggttcttggt---------------------aaaaac---agcttcctagtccctagtcctagtttcctggaaatgctggtatagtgagtctgggatggggcctgggaatttgtttt
s panTro5.chr15              63451415 497 +  83230942 ggcaattgact---------aaaacattt----ttcaatatttgtgtcagcc--aaaacaaaccaA-AAAA---------------------------------------TCAAT-AACTGATCAACACAAGCAAAT-----------------CTGCA------------CGCTGTGGTTGAGGAGTTGTAGTCCCATATGTCCTTATtaggatgtcagagcaagaagtcaccttaaatcatccagtcGGGTGGTTTCTGAATGCCAGCCTCTGAACTGGCTAGATCAGAATCCCTGGGAAGGTCTAGAAAAACACAGAAAATACACATTCTAGAGCCCCCAGAGCCCTGGATCTGTGGAGCTagaatctctgggctgggtcctgggcatctgcagtttttcagagct---ctccacgtactgctgatgaccagccaggttCACTCCcagtgggggatt-tcctaacttt-cctgaggatcacagttcccggaggttcttggt---------------------aaaaac---agcttcctagtccctagtcctagtttcctggaaatgctggtatagtgagtctgggatggggcctgggaatttgtttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23026519 498 -  99763055 ggcaattgact---------aaaacgttt----ttcaatatttgtgtcagcc--aaaacaaaccaA-AAAA---------------------------------------TCAAT-AACTGATCAACACAAGCAAAT-----------------CTGCA------------CACTGTGGTTGAGGAGTTGTAGTCCCATATGCCCTTATtaggatgtcagagcaagaagtcgccttaaatcatccagtccGGTGGCTTCTGAATGCCAGCCtctgaactggctagatcagaatccctgggaaggtctagaaaaacacagaaaatacacattctagggcccccagagccctggatctgtgcaaccagaatctctgggctgggtcctgggcatctgcagtttttcagagct---ctccaggtactgctgatgatcagccaggttCACTCCCAGTGGGGGATT-TCCTAACTTT-CCTGAGGATCACAGTTCCCGGAGGCTCTTGGT---------------------AAAAACAT-AGCTTCCTAGTCCCTAGTCCTAGTTTCCtggaaatgctgatttagtgagtctgggatggggcctggg-atttttttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2519635 497 +   2806052 ggcaattgact---------aaaacattt----ttcaatatttgtgtcagcc--aaaacaaaccaA-AAAA---------------------------------------TCAAT-AACTGATCAACACAAGCAAAT-----------------CTGCA------------CGCTGTGGTTGAGGAGTTGTAGTCCCATATGCCCTTATtaggatgtcagagcaagaagtcaccttaaatcatccagtccggtggtttctgaatgccagcctctgaactggctagatcagaatccctgggaaggtctagaaaaacacagaaaatacacattctagagcccccagagccctggatctgtggagctagaatctctgggctgggtcctgggcatctgcagtttttcagagct---ctccacatactgctgatgaccagccaggttCACTCCcagtgggggatt-tcctaacttt-cctgaggatcacagttcccagaggttcttggt---------------------aaaaac---agcttcctagtccctagtcctagtttcctggaaatgctggtatagtgagtctgggatggggcctgggaatttgtttt
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22686959 499 - 121039945 ggcaattgact---------aaaacattt----ttcaatatttgtgtcagcc--aaaacaaaccaA-AAAA---------------------------------------TCAAT-AACTGATCAACACAAGCAAAT-----------------CTGCA------------CGCTGTGGTTGAGGAGTTGTAGTCCCATATGCCCTTATTAGGATGTCAGAGCAAGAAGTCGCCTTAATTCATCCAGTCCGGTGGCTTCTGAATGCCAGCCTCTGAAttggctagatcagaatccctgggaaggtctagaaaaatacagaaaatacacattctagggcccccagagccctggatctgtggaaccagaatctctgggctgggtcctgggcatctgcagtttttcagagct---ctccaggtactgctgatgaccagccaggttCACTCCCAGTGGGGGATTATCCTaacttt-cctgaggatcacagttcccggaggctcttggt---------------------aaaaacat-agcttcctagtccctagtcctagtttcctggaaatgctgatttagtgagtctgggatggggcctgggaattt-tttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113282880 495 - 169600520 ggcagttgact---------aaaacgttt----ttcagtatttgtgtcagcc--aaaacaaaccaA-AAAA---------------------------------------TCAAT-AACTGATCAACACAAGCAAAT-----------------CTGCA------------CGCTGTGATTAAGGAGTTGTAGTCCCATATGCCCTTATTAGGATGTCAGAGCAAGAAGTCTCCTTAAATCTTCCAGTCCGGTGGCTTCTGAATGCCAGCCTCTGAATTGGCTAGATCAGAATCCCTGGGAAGGTCTAGAAAAATACAGAaaacacacattcta-gtcccccagagccctggatctgtggaaccagaatctctgggctgggtcct-ggcatctgcagtttttcagagct---ctccaggtactg-tgatgaccagtcaggttCACTCCCAGTGGGGgatt-tcctaacttt-cctgaggatcacagttcctggaggctcttggt---------------------aaaaacat-agcttcccagtccctagtcctagtttcctggaaatgctgatttagtgagtctgggatgggacctgggactct-tttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114627943 495 - 171882078 ggcagttgact---------aaaacgttt----ttcagtatttgtgtcagcc--aaaacaaaccaA-AAAA---------------------------------------TCAAT-AACTGATCAACACAAGCAAAT-----------------CTGCA------------CGCTGTGATTAAGGAGTTGTAGTCCCATATGCCCTTATTAGGATGTCAGAGCAAGAAGTCTCCTTAAATCTTCCAGTCCGGTGGCTTCTGAATGCCAGCCTCTGAAttggctagatcagaatccctgggaaggtctagaaaaatacagaaaacacacattcta-gtcccccagagccctggatctgtggaaccagaatctctgggctgggtcct-ggcatctgcagtttttcagagct---ctccaggtACTG-TGATGACCAGTCAGTTTCACTCCCAGTGGGGgatt-tcctaacttt-cctgaggatcacagttcctggaggctcttggt---------------------aaaaacat-agcttcccagtccctagtcctagtttcctggaaatgctgatttagtgagtctgggatgggacctgggactct-tttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3875254 495 +   4820037 ggcagttgact---------aaaacgttt----ttcagtatttgtgtcagcc--aaaacaaaccaA-AAAA---------------------------------------TCAAT-AACTGATCAACACAAGCAAAT-----------------CTGCA------------CGCTGTGATTAAGGAGTTGTAGTCCCATATGCCCTTATTAGGATGTCAGAGCAAGAAGTCTCCTTAAATCTTCCAGTCCGGTGGCTTCTGAATGCCAGCCTCTGAAttggctagatcagaatccctgggaaggtctagaaaaatacagaaaacacacattcta-ggcccccagagccctggatctgtggaaccagaatctctgggctgggtcct-ggcatctgcagtttttcagagct---ctccaggtactg-tgatgaccagtcaggttCACTCCCAGTGGGGgatt-tcctaacttt-cctgaggatcacagttcctggaggctcttggt---------------------aaaaacat-agcttcccagtccctagtcctagtttcctggaaatgctgatttagtgagtctgggatgggacctgggactct-tttt
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9742764 495 +  10730278 ggcagttgact---------aaaacgttt----ttcagtatttgtgtcagcc--aaaacaaaccaA-AAAA---------------------------------------TCAGT-AACTGATCAACACAAGCAAAT-----------------CTGCA------------CGCTGTGATTAAGGAGTTGTAGTCCCATATGCCCTTATTAGGATGTCAGAGCAAGAAGTCTCCTTAAATCTTCCAGTCCGGTGGCTTCTGAATGCCAGCCTCTGAAttggctagatcagaatccctgggaagatctagaaaaatacagaaaacacacattcta-ggcccccagagccctggatctgtggaaccagaatctctgggctgggtcct-ggcatctgcagtttttcagagct---ctccaggtactg-tgatgaccagtcaggttCACTCCCAGTGGGGgatt-tcctaacttt-cctgaggatcacagttcctggaggctcttggt---------------------aaaaacat-agcttcccagtccctagtcctagtttcctggaaatgctgatttagtgagtctgggatgggacctgggactct-tttt
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4590793 496 +  58131712 ggcagttgact---------aaaacgttt----ttcagtatttgtgtcagcc--aaaacaaaccaA-AAAA---------------------------------------TCAAT-AACTGATCAACACAAGCAAAT-----------------CTGCA------------TGCTGTGATTAAGGAGTTGTAGTCCCATATGCCCTTATTAGGATGTCAGAGCAAGAAGTCTCCTTAAATTTTCCAGTCCGGTGGCTTCTGAATGCCAGCCTCTGAAttggctagatcagaatccctgggaaggtctagaaaaatacagaaaatacacgttctagggcccccagagccctggatctgtggaaccagaatctctgggctgggtcct-ggcatctgcagtttttcagagct---ctccaggtactg-tgatgaccagtcaggttCACTCCCAGTGGGGgatt-tcctaacttt-cctgaggatcacagttcctggaggctcttggt---------------------aaaaacat-agcttcccagtccctagtcctactttcctggaaatgctgatttagtgagtctgggatgggacctgggactct-tttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3857448 496 +   4030761 GGCAGTTGACT---------AAAACGTTT----TTCAGTATTTGTGTCAGCC--AAAACAAACCAA-AAAA---------------------------------------TCAAT-AACTGATCAACACAAGCAAAT-----------------CTGCA------------CGCTGTGATTAAGGAGTTGTAGTCCCATATGCCCTTATTAGGATGTCAGAGCAAGAAGTCTCCTTAAATCTTCCAGTCCGGTGGCTTCTGAATGCCAGCCTCTGAAttggctagatcagaatccctgggaaggtctagaaaaatacagaaaacacacattctagggcccccagagccctggatctgtggaaccagaatctctgggctgggtcct-ggcatctgcagtttttcagagct---ctccaggtactg-tgatgaccagtcaggttCACTCCCAGTGGGGgatt-tcctaacttt-cctgaggatcacagttcctggaggttcttggt---------------------aaaaacat-agcttcccagtccctagtcctagtttcctggaaatgctgatttagtgagtctgggatgggacctgggactct-tttt
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3989810 496 +   5013933 GGCAGTTGACT---------AAAACGTTT----TTCAGTATTTGTGTCAGCC--AAAACAAAGCAA-AAAA---------------------------------------TCAGT-AACTGATCAATACAAGCAAAT-----------------CTGCA------------TGCTGTGATTAAGGAGTTGTAGTCCCATATGCCCTTATTAGGATGTCAGAGCAAGAAGTCTCCTTAAATCTTCCAGTCCGGTGGCTTCTGAATGCCAGCCTCTGAAttggctagattagaatccctgggaaggtctagaaaaatacagaaaatacacattctagggcccccagagccctagatctgtggaaccagaatctctgggctgggtcct-ggcatctgcagtttttcagagct---ctctaggtactg-tgatgaccagtcaggttCACTCCCAGTGGGGgatt-tcctaacttt-cctgaggatcacagttcctgtaggctcttggt---------------------aaaaacat-agcttcctagtccctagtcctagtttcctggaaatgctgatttggtgagtctgggatgggacctgggactct-tttt
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113716219 485 - 132174527 ggcaattgact---------gaaacattt----ttcatcatttgtgtcagcc--aaaacaaaccaA-AAAA---------------------------------------TCAAT-AACTGATCAACACAG-----------------------CTGCA------------CGCCGTAGCTGAGGAGTTGTAGTCCCACGTGCCCTTATTAGGATGTCAGAGCAAGAAGTCTCCTTAAATCATCCAGCCTGGTGGTTTCTGAATGCCAGCCTCTGAGttggctagatcagaatcactgggaaggtctagaaaaatacagaaaatacatattctagggcccccagagccctggacctgtggaaccagaatctctgggctgggcccggggcatctgcggtttttcagcgct---ctccaggtactgctgatgaggag-cAGTTTTACTTCCAGTGGGGgatt-tcctaacttt-ccagaggatcacagttcccagaggctcttgat---------------------aaaaacat-agcttcctagttcc-------agtttctaggaaatgctgatttagtgagtctgcgatggggcctgggagtttgtttt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              41004 486 -    125141 ggcaattgact---------aaaacattt----ttcaacatttgtgtcagcc--aaaacaaacCGA-AAAA---------------------------------------TCAAT-AACCGATCAACACAG-----------------------CTGCA------------CGCTGTGGCTGAGGAGCTGTAGTCCCACATGCCCTTATtaggatgtcagagcaagaagtctccttaaatcatccagtccGGTGGCTTCTGAATGCCAGCCTCTGAGttggctggatcagaatcactgggaaggtctagaaaaatacagaaaatatacattctagggcccccagcgccctggatctgtggaaccagaatctctgggctgggtcctgggcatccatggtgtttcagcact---cttcaggtactgctgatgATGAG-CAGTTTCACTCCCAGTGGGGGATT-TCCTAACTTT-CCGGAGCATCACAGTTCCCAGAGGCTCTTGAT---------------------AAAAACATAAGCTTCCTAGTTCC-------AGTTTCTAGGaaatgctgatttagtgagtctgggatggggcctgggagtttgtttt
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        55873 486 +  11725426 ggcaattgact---------aaaacattt----ttcaacatttgtgtcagcc--aaaacaaacTGA-AAAA---------------------------------------TCAAT-AACTGATCAACACAG-----------------------CTACA------------CGCTGTGGCTGAGGAGTTGTAGTCCCACATGCCCTTATtaggatgtcagagcaagaagtctccttaaatcatccagtccGGTGGCTTCTGAATGCCAGCCTCTGAGttggctagatcagaatcactgggaaggtctagaaaaatacagaaaatatacattctagggcccccagagccctggatctatggaaccagaatctctgggctgggtcctgggcatccgcagtgtttcagcgct---ctccaggtactgctgatgACGAG-CAGTTTCACTCCTGGTGGGGgatt-tcctaacttt-ccccaggatcacagttcccagaggctcttgat---------------------aaaaacataagcttcctagttcc-------agtttctaggaaatgctgatttagtgagtctgggatggggcctgggagtttgtttt
i cebCap1.NW_016107334v1    C 0 I 306
s aotNan1.NW_018503093v1       650863 485 +    730879 ggtaactgact---------aaaacattt----ttcaacatttatgtcagcc--aaaacaaacCG--AAAA---------------------------------------TCGAT-AACTGATCAACACAG-----------------------CTGCA------------CGCTGTGGCTGAGGAGCTGTAGTCCCACGTGCCCTTATTAGGATGTCAGAGCAAGAAGTCTCCTTAAATCATCCAGCCCGGTGGCTTCTGAATGCCAGCCTCTGAGttggctagatcagaatcactgggaaggtctagaaaaatacagaaaatatacattccagggcccccaaagccctggatctgtggaaccagaatctctgggctgggtcctgggcatctgcggtgtttcagcgct---ctccaggtactgctaatgACAAG-CAGTTTCACTCCCAGTGGGGGATt-tcctaactttccccgaggatcatagttcccagaggctcttgat---------------------aaaaacat-agcttcctagttcc-------agtttctaggaaatgctgtgttagtgagtctgggctggggcctgggagtttgtttt
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5755350 460 -  36342412 ggtgattga------------------------ttcaaTATTTGTGGCAGCT--GAAAGAACCCCC-A-------------------------------------------CCCA-GGTTGACAAACAAAAGCAAGT-----------------CTGCA------------GGCTGTAGTTGTGGCATTGTAGTCCCAAATTCCCTTATTAGGTTGTCAGAGCAAGAAATCTCCTTAAATCTTCCAGCCCAGTGGTTTCCAAAGGCAAGCCCCTGAAATGGCTACATCAGAATCCCTAGGAAAGTCTAGAAAAATAAAGAAAATTCAGATTCTGGGGACCC--------------------atcagaatctt--ggctgggtcctgggcacctgc-gtttttcagagct---cccca-gCACTGCTGATGATCAGCCGGCTTCACTTCCAGAGGGGGGCT-tcctaaaact-tctgatgatcacagctccctgtggcttctgct---------------------agaaacac-agcttcctagtctctagtcctggcttcctagagatgctgatgtagttagtctgagatgagacctgggaatttgtttt
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90166163 441 + 124595110 agaaattaact-----------aattttt----cccaatatatgtgcca------------------------------------------------------------------------ataaatagaa-caggc-----------------ctgca------------gtctatggTCAAGGGGTAGTAGTCTCAAATACTCTTATTAGGGTGCCAGGGCAGCAAGC--------------------------------ATGCTAGCCACTGAAAGGACCCAGTTAGAACCCCTGGGAAGGT----ACGATTACACAGCCTATACATCATG-GGACCCTAGAACCCCAAACCTACAGTAGAGCAGTCTGTTGGCTAGGTCTTATGTGCCTGTAGCTTTTCAAAGCT---CTGTAGGTACCACTGAAGGTCAGTCAAGTTCACTCCCAGTGAGAGATT-T-CTATCTTT-CCCCACAGTC-CAGTTCCCTGAGGCTTTTGCTATaaaaaaaaaaaaaaaaaaaaaaaaaaa-aGCTTCTTCATCCT--------CCTTTGTGgagatgctgattcagtgagtctgggatggggcctgggaatttgtttt
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58185939 488 +  91889043 GGCAACTGATT----------AAATATTT----TTCAATATTTGTGCAAGTT--GAAACGAACAAACAAGA---------------------------------------TCAATAAACTGACAAAAAC---CAAAT-----------------CTGCA------------GGCAGTGATTGTGGAGCTGTAATCCCAAATACCCTCATTAGGACGTCAGAGCAAGGAGCCTCCTTGAACCAGCCTGCCCACTGGCTTCCAAAGGTCAGCCTCGGAAACAGTCCAGTCTGAGTCCCTGTG-AGGcttaggaaaatatggaaaatgcagattctg-gggccccagagccctaggtctatggaatc--catctgtgggctgtgttctcagcctctgtagcctttcagagctctcctccaggtactgctgatgctcggccaagttCACtctctgaggaggatt-tccggacttc-cctgatgatcacagtcccctgaggcccttggc--------------------aaaaaacac-agcttcccagtccc--------atttcctggagatgctgaatcagtgggtctgcaatg-gctctgggaatttgattt
i canFam3.chr3              I 193 C 0
s dasNov3.JH579681             812323 521 +   1727078 accaatttactgctttccttaaaaagtcCTGGGTTCAATCCCAGTAACCTTCTAAAAATGAACAAA-ACAAACATGGACTTTTTGCTCTATCTCGTTTTCCCCTTTTTGTTTATT-GATTGA--AAGACAAGCAAACGAAAAATCCAACTCTCACTGCAAagtggatgtagctcagttgttgagcaactgc-ttcccatgta--------------------caaggacctatgttcaatc------cctggtacctccttaa---------caaaaCAAAAAAAA--AGAATCCTTGAGCAGAT-TAGAAAAATGCAGAaaagacagattcca-gggccccaaatccctggatctatggaatgagaatctctgggctggtctctggacatgtgtggtttttcaaagct---ttctgggtgctt--------TAGTTAAATCCAATCCCAGTAAGGAATT-TCCCAACTTC-TCTGATGACCACAG-Tccttgaggctc-tgat---------------------aaaaacaa-agattgc-agtgcc--------atttcctggagatgccaatctagtgagtctgagatgaggcgtgggaatctgtttt
i dasNov3.JH579681          C 0 C 0

a score=15561.000000
s hg38.chr15_KI270850v1_alt      4251 1 +    430880 t
s panTro5.chr15              63451912 1 +  83230942 t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23027017 1 -  99763055 t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2520132 1 +   2806052 t
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22687458 1 - 121039945 t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113283375 1 - 169600520 t
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114628438 1 - 171882078 t
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3875749 1 +   4820037 t
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9743259 1 +  10730278 t
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4591289 1 +  58131712 t
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3857944 1 +   4030761 t
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3990306 1 +   5013933 t
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113716704 1 - 132174527 t
i calJac3.chr10             C 0 I 304
s saiBol1.JH378378              41490 1 -    125141 t
i saiBol1.JH378378          C 0 C 0
s aotNan1.NW_018503093v1       651348 1 +    730879 t
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5755810 1 -  36342412 t
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90166604 1 + 124595110 t
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58186427 1 +  91889043 t
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             812844 1 +   1727078 t
i dasNov3.JH579681          C 0 C 0
e cebCap1.NW_016107334v1        56359 306 +  11725426 I

a score=96510.000000
s hg38.chr15_KI270850v1_alt      4252 6 +    430880 aagaaa
s panTro5.chr15              63451913 6 +  83230942 aagaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23027018 6 -  99763055 aagaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2520133 6 +   2806052 aagaaa
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22687459 6 - 121039945 aagaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113283376 6 - 169600520 aagaaA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114628439 6 - 171882078 aagaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3875750 6 +   4820037 aagaaA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9743260 6 +  10730278 aagaaA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4591290 6 +  58131712 aagaaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3857945 6 +   4030761 aagaaA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3990307 6 +   5013933 aagaaa
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113717009 6 - 132174527 aagaaa
i calJac3.chr10             I 304 C 0
s saiBol1.JH378378              41491 6 -    125141 aagaaa
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        56665 6 +  11725426 aagaaa
i cebCap1.NW_016107334v1    I 306 C 0
s aotNan1.NW_018503093v1       651349 6 +    730879 aagaaa
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5755811 6 -  36342412 gagaaa
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90166605 6 + 124595110 aagaaa
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58186428 6 +  91889043 aacaaa
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             812845 6 +   1727078 aaaaaA
i dasNov3.JH579681          C 0 I 1043

a score=28903.000000
s hg38.chr15_KI270850v1_alt      4258 3 +    430880 ctc
s panTro5.chr15              63451919 3 +  83230942 ctc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23027024 3 -  99763055 ttc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2520139 3 +   2806052 ctc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22687465 3 - 121039945 ctt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113283382 3 - 169600520 CTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114628445 3 - 171882078 ctT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3875756 3 +   4820037 CTT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9743266 3 +  10730278 CTT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4591296 3 +  58131712 ctT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3857951 3 +   4030761 CTT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3990313 3 +   5013933 ttT
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113717015 3 - 132174527 CTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              41497 3 -    125141 ctT
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        56671 3 +  11725426 CTT
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       651355 3 +    730879 ctT
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5755817 3 -  36342412 ttc
i otoGar3.GL873530          C 0 I 2182
s mm10.chr9                  90166611 3 + 124595110 ttc
i mm10.chr9                 C 0 I 2
s canFam3.chr3               58186434 3 +  91889043 ttc
i canFam3.chr3              C 0 C 0
e dasNov3.JH579681             812851 1043 +   1727078 I

a score=2767209.000000
s hg38.chr15_KI270850v1_alt      4261 256 +    430880 --ATCTGTGAGATCTGGAAAATCCTTGCACTAGTGGCCCGTtgaggctcagtgatgaggaagacttgctcagagccacatagcacgttgccccagcccatccaacctcctg------actctcagagaaagctctttGAGGCCGGCACTGCT-GGGGCAGTTGTGAGCAGTGGGAGATGCTCTCAGC-AGGGGCACAGCACTGACGTGTGCAGGGCACTCTACATGCAGTTTG-GCAGGGGACAGACTGGAGGGCGGGTTTGGTTTC
s panTro5.chr15              63451922 256 +  83230942 --ATCTGTGAGATCTGGAAAATCCTTGCACTAGTGGCCCGTTGAGGCTCAATGATGAGGAAGACTTGCTCAGAGCCACACAGCACGTTGCCCCAGCCCATCCAACCTCCTG------ACTCTCAGAGAAAGCTCTTTGAGGCCGGCACTGCT-GGGGCGGTTGTGAGCAGTGGGAGATGCTCTCAGC-AGGGGCACAGCACTGACGTGTGCAGGGCACTCTACATGCAGTTTG-GCAGAGGACAGACTGGAGGGCGGGTTTGGTTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23027027 256 -  99763055 --ATCTGTGAGGTCTGGAAAATCCTTGCACTAGTGGCCCGCTGAAGCTCAATGATGGGGAAGATTAGCTCAGAGCCACACAGCACGTTGCCCCAGCCTACCCAGTCTCTTG------ACTCTCAGAGAAAGCTCTTTGAGGCTGGCATTGCT-GCGGCGGTTGTGAGCAGAGGGAGATGCTCTCAGC-AGGGGCACAGCACTGGCTTGTGCAGGGCACTCTACGTGCAGTTTG-GCAGAGGACAGACTGGAGGGCAAGTTTGGTTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2520142 256 +   2806052 --ATCTGTGAGATCTGGAAAATCCTTGCACTAGTGGCCCGTTGAGGCTCAATGATGAGGAAGACTTGCTCAGAGCCACACAGCACGTTGCCCCAGCCCATCCAACCTCCTG------ACTCTCAGAGAAAGCTCTTTGAGGCCGGCACTGCT-GGGGCGGTTGTGAGCAGTGGGAGATGCTCTCAGC-AGGGGCACAGCACTGACGTGTGCAGGGCACTCTACATGCAGTTTG-GCAGAGGACAGACTGGAGGGCGGGTTTGGTTTC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22687468 256 - 121039945 --ctctgtgaGGTCTGCAAAATCCTTGCACTAGTGGCCCGCTGAAGCTCAATGACGGGGAAGATTAGCTCAGAGCCACACAGCACGTTGCCCCAGCCTACCCAGTCTCTTG------ACTCTCAGAGAAAGCTCTTTGAGGCCGGCATTGCT-GGGGCGGTTGTGAGCAGAGGGAGATGCTCTCAGC-AGGGGCACAGCACTGGCATGTGCAGGGCACTCTACGTGCAGTTTG-GCAGAGGACAGACTGGAGGGCAAGTTTGGTTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113283385 256 - 169600520 --ATCTGTGAGGTCTGGAAAATCCTTGCACTAGTGGCCCGCTGAAGCTCAATGACAGGGAAGATTAGCTCAGAGCCACACAGCACGTTGCCCCAGCCTAACCAGTCTCTTG------ACTCTCAGAGAAGGCTCTTTGAGGCTGGCACTGCT-GGGGCGGTTGGGAGCAGAGGGAGATGCTCTCAGC-AGGGGCACAGCACTGGCATGTGCAGGGCACTCTACATGCAGTTTG-GCAGAGGACAGACTGGAGGGCGGGTTTGGTTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114628448 256 - 171882078 --ATCTGTGAGGTCTGGAAAATCCTTGCACTAGTGGCCCGCTGAAGCTCAATGACAGGGAAGATTAGCTCAGAGCCACACAGCACGTTGCCCCAGCCTAACCAGTCTCTTG------ACTCTCAGAGAAGGCTCTTTGAGGCTGGCACTGCT-GGGGCGGTTGGGAGCAGAGGGAGATGCTCTCAGC-AGGGGCACAGCACTGGCATGTGCAGGGCACTCTACATGCAGTTTG-GCAGAGGACAGACTGGAGGGCGGGTTTGGTTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3875759 256 +   4820037 --ATCTGTGAGGTCTGGAAAATCCTTGCACTAGTGGCCCGCTGAAGCTCAATGACAGGGAAGATTAGCTCAGAGCCACACAGCACGTTGCCCCAGCCTACCCAGTCTCTTG------ACTCTCAGAGAAGGCTCTTTGAGGCTGGCACTGCT-GGGGCGGTTGGGAGCAGAGGGAGATGCTCTCAGC-AGGGGCACAGCACTGGCATGTGCAGGGCACTCTACATGCAGTTTG-GCAGAGGACAGACTGGAGGGCGGGTTTGGTTTC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9743269 256 +  10730278 --ATCTGTGAGGTCTGGAAAATCCTTGCACTAGTGGCCCGCTGAAGCTCAATGACAGGGAAGATTAGCTCAGAGACACACAGCACGTTGCCCCAGCCTACCCAGTCTCTTG------ACTCTCAGAGAAGGCTCTTTGAGGCTGGCACTGCT-GGGGCGGTTGGGAGCAGAGGGAGATGCTCTCAGC-AGGGGCACAGCACTGGCATGTGCAGGGCACTGTACATGCAGTTTG-GCAGAGGACAGACTGGAGGGCGGGTTTGGTTTC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4591299 250 +  58131712 --ATCTGTGAGGTCTGGAAAATCCTTGCACTAGTGGCCCGCTGAAGCTCAATGACAGGGAAGATTAGCTCAGAGCCACACAGCACGTTGCCCCAGCCTACCCAGTCTCTTG------ACTCTCAGAGAAGGCTCTTTGAGGCTGGCACTGCT-GGGGCGGTTGGGAGCAGAGGGAGAT------AGC-AGGGGCACAGCACTGGCATGTGCAGGGCACTCTACATGCAGTTTG-GCAGAGGACAGACTGGAGGGCGGGTTTGGTTTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3857954 256 +   4030761 --ATCTGTGAGATCTGGAAAATCCTTGCACTAGTGGCCCGCTGAAGCTCAATGACAGGGAAGATTAGCTCAGAGCCACACAGCACGTTGCCCCAGCCTACCCAGTCTCTTG------ACTCTCAGAGAAGGCTCTTTGAGGCTGGCACTGCT-GGGGCGGTTGGGAGCAGAGGGAGATGCTCTCAGC-AGCGGCACAGCACTGGCATGTGCAGGGCACTCTACATGCAGTTTG-GCAGAGGACAGACTGGAGGGCGGGTTTGGTTTC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3990316 256 +   5013933 --ATCTGTGAGGTCTGGAAAATCTTTGCACTAGTGGCCCGCTGAAGCTCAATGACAGGGAAGATTAGCTCAGAGCCACACAGCACGTTGCCCCAGCCTACCCAGTCTCTTG------ACACTCAGAGAAGGCTCTTTGAGGCTGGCACTGCT-GGGGCGGTTGGGAGCAGAGGGAGATGCTCTCAGC-AGGGGCACAGCACTGGCATGTGCAGGGCACTCTACATGCAGTTTG-GCAGAGGACAGACTGGAGGGTGGGTTTGGTTTC
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113717018 239 - 132174527 --ATCTGTGA-----GGAAAATCCTTGCACTAGTGGCTGCCTGAAGCTCAATGATGGG-------------GAGCCACATAGCAAGTTGCCCCAGTCCATCCAGCCTCCTG------ATTCTCAGAGAAGGCTCTTTGAGGCCGGCACTGCT-GGGGCAGTTGTGAGCAGAGGGCAATGTTCTCAGCAAGGGGCACACCACTGGCATGTGCAGGGCACTCTACATGCAGTTTG-GCAGAGGACAGACTGGAGGGTGGGTTTGGTTTC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              41500 207 -    125141 --ATCCGTGAGGTCTGGAAAATCCTTGTACTAGGGGGCCCCTGAAGCTCAATGACAGG-------------GAGCCACATAACAAGTTG--------------------------------------------TTTTGAGGCTGGCACTGCT-AGGGCAGTTGTGAGTAGGGGGAGATGTTCTCAGCAAGGGGCACACCATTGGCATGTACAGGGCACTCTACATGTGGTTTGCGCAGAGGACAGACTGGAGGGCGGGTTTGGTTTC
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        56674 245 +  11725426 --ATCTGTGAGGTCTGGAAAATCCTTGCGCTagtgggcccctgaagctcaatgatggg-------------gagccacatagcaagttgccccagtccatccagcctcctg------actctcagagaaggctctttGAGGCCGGCACTGCT-GGGGCAGTTGTGAGTAGAGGGAGATGTTCTCAGCAAGGGGCACACCACTGGCACGTGCAGGGTGCTCTACATGTGGTTTGCGCAGAGGGCAGACTGGAGGGCGGGTTTGGTTTC
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       651358 243 +    730879 --ATCTGTGAGGTCTGGAAAATCCTTGCACTGGTGGCCGCCTGAAGCTCGATGAT-GG-------------GAGCCACATAGCAAGTTGCCCCAGTCCATCCAGCCTCCTG------ACTCTCAGAGAAGGCTCTTTGAGGCCGGCACTGCT-GGGGCAGTTGTGAGCAGAGGGAGATATTCTCAGCAAGGGGCACACCACTGGCATGTGCAGGGCAGTCTACGTGCCGTTTGTGCGGAGGACAGACTGGAGGGC-GGTTTGGTTTC
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5758002 251 -  36342412 --ATCCATGAAGTCTGGAAAATCCTTGTACTTG-GGCTCCCTGATAACCAGTGATGGGGAAGACTTGCTCAGAGCCAGACAG-----TCACCCAGCCAACACCGCCTCATG------ACTTTTGGAAAAGGATCTTTGAGTCCTGGACCTCTGGGGGCAGTTGTGGTAAGAGGGAGATGTCCTCAGC-GGGGGCACACCACTGGTGTGTGTAAGGCACTCATCATGTGGCTTG-GCAGAGGACAGCTTGGAGGAATGGTCTGGTTTC
i otoGar3.GL873530          I 2182 I 2
s mm10.chr9                  90166616 228 + 124595110 --gtccaggAAGTCTGGGAACTCTTTGCACTTCCCACCCCCTGAAGTTCATTGATTGGAAAGACTTGCTAAGAGCCACACAGCGATTCTTCCCAGCTCGCTC-GTCT-GTG------ACTCTCAGAGAGGTC---------------------AGGGCAGCCGTGGGCAAAGGGCCAGGTCTTGAGT-AGGGGCGCACCATTGGCATGTGAGTGGCACCCTGTGTGAGTTTTG-GCAGCAGG-----TGGAGGGAGGGCTTGACTC-
i mm10.chr9                 I 2 C 0
s canFam3.chr3               58186437 245 +  91889043 ttcCCCAAGAAGCCTGGAAAATCCTTGTACTTGTGTCCTCCGGAGACT--GGGAGAGGGAACCTTTGCCCAGAACCACACAGAG---TGACCCTGCCCGTCT-GCCCCTCACTGAGTATCCTCCTGGACGGCACCCTGTGGGCTGCCCACCA---GGCGGCTG-GGGCATTCGGGCATGTCCTTGGC-GGGAGCACACCACTGGTGTGTGCAGGGCACGCTGCACGTGGTTTG-GCAGGAGATGGCCAG----------TTGGTTTC
i canFam3.chr3              C 0 C 0
e dasNov3.JH579681             812851 1043 +   1727078 I

a score=1471532.000000
s hg38.chr15_KI270850v1_alt      4517 139 +    430880 CGCAGCCT-GCTGGGATGGAGCTTTGGGCTGGGC-------------------AGCAGCAG-AAGGAATCCTGGTGGGATGTCAGCAGGGCACTCAGG------CATTCATGTGAGCCCGTGGAGTCTATTGTCGTGAACAGCCAGGATCCTGG-GAGCTGGGTATA
s panTro5.chr15              63452178 139 +  83230942 CGCAGCCT-GCTGGGATGGAGCTTTGGGCTGGGC-------------------AGCAGCAG-AAGGAATCCTGGTGGGATGTCAGCAGGGCACTCAGG------CATTCATGTGAGCCCGTGGAGTCTATTGTCGTGAACAGCCAGGATCCTGG-GAGCTGGGTATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23027283 139 -  99763055 CGCAGCCT-GCTGGGATGGAGCTTCGGGCTGGGC-------------------AGCAGCAG-AAGGAACCCTGGTGGGATGTCAGCAGGGCACTCAGG------CATTCATGCGAGCCTGAAGAGTCTATTGTCGTGAACAGCCAGGATCCTGG-GAGCTGGGTATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2520398 139 +   2806052 CGCAGCCT-GCTGGGATGGAGCTTTGGGCTGGGC-------------------AGCAGCAG-AAGGAATCCTGGTGGGATGTCAGCAGGGCACTCAGG------CATTCATGTGAGCCCGTGGAGTCTATTGTCGTGAACAGCCAGGATCCTGG-GAGCTGGGTATA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22687724 139 - 121039945 CGCAGCCT-GCTGGGATGGAGCTTCGGGCTGGGC-------------------AGCAGCAG-AAGGAACCCTGGTGGGATGTCAGCAGGGCACTCAGG------CATTCATGCGAGCCTGAAGAGTCTATTGTCGTGAACAGCCAGGATCCTGG-GAGCTGGGTATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113283641 139 - 169600520 TGTAGCCT-GCTGGGATGGAGCTTTGGACTGGGC-------------------AGCAGCAG-AAGGAACCCTGGTGGGATGTCAGCAGGGCACTCAGG------CATTCATGCGAGCCTGAAGAGTCTATTGTCGTGAACAGCCAGGATCCTGG-GAGCTGGGTATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114628704 139 - 171882078 TGTAGCCT-GCTGGGATGGAGCTTTGGACTGGGC-------------------AGCAGCAG-AAGGAACCCTGGTGGGATGTCAGCAGGGCACTCAGG------CATTCATGCGAGCCTGAAGAGTCTATTGTCGTGAACAGCCAGGATCCTGG-GAGCTGGGTATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3876015 139 +   4820037 TGTAGCCT-GCTGGGATGGAGCTTTGGACTGGGC-------------------AGCAGCAG-AAGGAACCCTGGTGGGATGTCAGCAGGGCACTCAGG------CATTCATGCGAGCCTGAAGAGTCTATTGTCGTGAACAGCCAGGATCCTGG-GAGCTGGGTATA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9743525 139 +  10730278 TGTAGCCT-GCTGGGATGGAGCTTTGGACTGGGC-------------------AGCAGCAG-AAGGAACCCTGGTGGGATGTCAGCAGGGCACTCAGG------CATTCATGCGAGCCTGAAGAGTCTATTGTCGTGAACAACCAGGATCCTGG-GAGCTGGGTATA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4591549 139 +  58131712 TGTAGCCT-GCTGGGATGGAGCTTTGGACTGGGC-------------------AGCAGCAG-AAGGAACCCTGGTGGGATGTCAGCAGGGCACTCAGG------CATTCATGCGAGCCTGAAGAGTCTATTGTCGTGAACAGCCAGGATCCTGG-GAGCTGGGTATA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3858210 139 +   4030761 TGTAGCCT-GCTGGGATGGAGCTTTGGACTGGGC-------------------AGCAGCAG-AAGGAACCCTGGTGGGATGTCAGCAGGGCACTCAGG------CATTCATGCGAGCCTGAAGAGTCTATTGTCGTGAACAGCCAGGATCCTGG-GAGCTGGGTATA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3990572 139 +   5013933 TGTAGCCT-GCTGGGATGGAGCTTTGGACTGGGC-------------------AGCAGCAG-AAGGAACCCTGGTGGGATGTCAGCAGGGCACTCAGG------CATTCATGCAAGCCTGAAGAGTCTATTGTCGTGAACAGCCAGGATCCTGG-AAGCTGGGTGTA
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113717257 136 - 132174527 TGCAGCAT-ACTGGGATGGAGCTTTGGGCTGGGC-------------------AGCAGCAG-AAAGACCCCTGGTGGGATGTCTGCAGGGCACTCAGG------CATTCACGTGAGCCAGAGGAGTCTACT---GTGGACAGCCAGGATCCTGG-AAGCTGGGTATA
i calJac3.chr10             C 0 I 2792
s saiBol1.JH378378              41707 136 -    125141 TGCAGCGT-GCTGGGATGGAGCTTTGGGCTGGGC-------------------AGCAGCAG-AAAGAACCCTGGTGGGATGTCTGCAGGGCACACAGG------CATTCACGTGAGCCGGAGGAGTCTACT---GTGGACAGCCAGGATCCTGG-AAGCTGGGTATA
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        56919 136 +  11725426 TGCAGTGT-GCTGGGATGGAGCTTTGGGCTGGGC-------------------AGCGGCAG-AGAGAACCCTGGTGGGATGTCTGCAGGGCACTCAGG------CATTCACGTGAGCCAGAAGAGTCTACT---GTGGACAGCCAGGATCCTGG-AAGCTGGGTATA
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       651601 136 +    730879 TGCAGCGT-GCTGGGATGGAGCTTTGGGCTGGGC-------------------AGCAGCAG-ACAGAACCCTGGTGGGATATCTGCAGGGCACTCAGA------CATTCGCGTGAGCCGGAGGAGTCTGCT---GTGGACAGCCAGGATCCTGG-AAGCTGGGTATA
i aotNan1.NW_018503093v1    C 0 C 0
s mm10.chr9                  90166844 140 + 124595110 TGTAACATGGCCATAGTTGAGCCTCTGGGTAGACTTAGTCTCCCAACTTGGCAGGTGGCAGCAAAGAGCTCAGGC--TATGTCTGCATGATACTTGGGCCAGAACATTTCTCTGGGCCTGAGGGGT------------------------CAGG-TATCTGGCTGAA
i mm10.chr9                 C 0 I 2
s canFam3.chr3               58186682 156 +  91889043 TGCAGCCTGGCCAGGATGGAGCTTGGGGCTGGACTGGGCTGGGCTGCCCTTTCAGCCACAG-AGAAAGCCTGGGGGGCATTT--GCAGGGTGCCCAGA------CATTTCTATG-GCCCCAGGGGTC-ACTGTCCCGAGCAGCCAGGATTTGGGAGAGCTGGGCCTG
i canFam3.chr3              C 0 C 0
e dasNov3.JH579681             812851 1043 +   1727078 I
e otoGar3.GL873530            5758253   2 -  36342412 I

a score=1038871.000000
s hg38.chr15_KI270850v1_alt      4656 141 +    430880 AACCCAATC----------------------GAGAAACTCCAGATTGCCAAGTTCCCTAACTGTGCTCTTTAGAGCCTGGGAACTGCAGAGAGGG-AAAA----------G---AGTGGGAAAAGCATGGATGCCAGG-------------GCTCCCC-C-ACCCCCG----------------------------GCACATG-AGATTT------------CTTTTGAGACT-
s panTro5.chr15              63452317 142 +  83230942 AACCCAATC----------------------GAGAAACTCCAGATTGCCAAGTTCCCTAACTGTGCTCTTTAGAGCCTGGGAACTGCAGAGAGGGAAAAA----------G---GGTGGGAAAAGCATGGATGCCAGG-------------GCTCCCC-C-ACCCCTG----------------------------GCACATG-AGATTT------------CTTTTGAGACT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23027422 141 -  99763055 AACCCAATC----------------------GAGAAACTCCAGATTGCCAAGTTCCCTAACTGTGCTCTTTAGAGCCTGGGAACTGCAGAGAGGG-AAAA----------G---GG-GGGAAAAGCATGGATGCCGGA-------------GCTCTCC-CAACTCCCG----------------------------GCACATG-AGATTT------------CTCTTGAGACT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2520537 142 +   2806052 AACCCAATC----------------------GAGAAACTCCAGATTGCCAAGTTCCCTAACTGTGCTCTTTAGAGCCTGGGAACTGCAGAGAGGG-AAAA----------G---GGTGGGAAAAGCATGGATGCCGGG-------------GCTTCCC-CAACCCCCG----------------------------GCACATG-AGATTT------------CTCTTGAGACT-
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22687863 152 - 121039945 AACTCAATC----------------------CAGAAACTCCAGATTGCCAAGTTCCCTAACTGTGCTCTTCAGAGCCTGGGAACTGCAGAGAGGG-AAAAGGTGGTGGGCG---GGGGGGGGAAGCATGGATGCCGGG-------------GCTCCCC-CAACGCCCG----------------------------GCACATG-AGATTT------------CTTTTGAGACT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113283780 144 - 169600520 AATCCAATC----------------------AAGAAACTCCTGATTGCCAAGTTTCCTAACTGTGCTCTTTAGAGCCTGGGAACTGCAGAGAGGG-AAAA----------GGCCGGGGAGGAAAGCATGGGTGCCCG--------------GCTCTCC-CAAACTCCA----------------------------GCACATG-AGATTT------------CTTTTAAGACT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114628843 144 - 171882078 AATCCAATC----------------------AAGAAACTCCTGATTGCCAAGTTTCCTAACTGTGCTCTTTAGAGCCTGGGAACTGCAGAGAGGG-AAAA----------GGCCGGGGAGGAAAGCATGGGTGCCCG--------------GCTCTCC-CAAACTCCA----------------------------GCACATG-AGATTT------------CTTTTAAGACT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3876154 144 +   4820037 AATCCAATC----------------------AAGAAACTCCTGATTGCCAAGTTTCCTAACTGTGCTCTTTAGAGCCTGGGAACTGCAGAGAGGG-AAAA----------GGCCGGGGAGGAAAGCATGGGTGCCCG--------------GCTCTCC-CAAACTCCA----------------------------GCACATG-AGATTT------------CTTTTGAGACT-
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9743664 144 +  10730278 AATCCAATC----------------------AAGAAACTCCTGATTGCCAAGTTTCCTAACTGTGCTCTTTAGAGCCTGGGAACTGCAGAGAGGG-AAAA----------GGCCGGGGAGGAAAGCATGGGTGCCCG--------------GCTCTCC-CAAACTCCA----------------------------GCACATG-AGATTT------------CTTTTGAGACT-
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4591688 144 +  58131712 AATCCAATC----------------------GAGAAACTCCTGATTGCCAAGTTTCCTAACTGTGCTCTTTAGAGCCTGGGAACTGCAGAGAGGG-AAAA----------GGCCGGGGAGGAAAGCATGGATGCTCG--------------GCTCTCC-CAAACTCCA----------------------------GCACATG-AGATTT------------CTTTTGAGACT-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3858349 144 +   4030761 AATCCAATC----------------------AAGAAACTCCTGATTGCCAAGTTTCCTAACTGTGCTCTTTAGAGCCTGGGAACTGCAGAGAGGG-AAAA----------GGCCGGGGAGGAAAGCATGGGTGCCCG--------------GCTCTCC-CAAACTCCA----------------------------GCACATG-AGATTT------------CTTTTGAGACT-
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3990711 144 +   5013933 AATCCAGTC----------------------TAGAAACTCCTGGTTGCCAAGTTCCCTAACTGTGCTCTTTAGAGCCTGCGAACTGCAGAGAGGG-AAAG----------GCCAAGGGGGGAAAGCATGGGTGCCGG--------------GCTCCCC-CAAACTCCA----------------------------GCACATG-AGATTT------------CTTTTGAGACT-
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              41843 149 -    125141 AACGCAGTT----------------------GAGAAACCAC--GTTGGCAAGTTCCCTAACTGTGCTCTTTAGAGCCTGGGAACTGCAGGGAGGG-AAAA----------G---TAGGGGAGAAGCATGGGTGCCGGGGTTTCC----CCAACCCCCT-CAACCACCA----------------------------GCACAGG-AGATTG------------CTTTAGAAGCT-
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        57055 146 +  11725426 AACCCAGTC----------------------GAGAAACCAC--GTTGCCACGTTCCCTAACTGTGCTCTTTAGAGCCTGGGAACTACAGGGAGGG-AAA----------------AGGGGAGAAGCATGAGTGCTGGGGTTTCC----CCAACGCCCC-CAACCCCCA----------------------------GCACAGG-AGATTT------------CTTTCGAAGCT-
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       651737 150 +    730879 AACCCAGTC----------------------AAGAAATCAC--GCTGCCGAGTTCCCTAACTGTGTTCTTTAGAGCCTGGGAACTACAGAGAGGG-AAAA----------G---TCGGGGAGAAGCATGGGTGCTGGGGTTTCC----CCAACCCCCCACAACCCGCA----------------------------GGACAGG-AGATTT------------CTTTCGAAGCT-
i aotNan1.NW_018503093v1    C 0 C 0
s mm10.chr9                  90166986 145 + 124595110 ACCTCAGTG----------------------AA------TCAGAGCAGCAAGTTTCCTGGCTGTGC---CTGGAGTCTAGGAACTGTGGAGAGGG-AAAG----------GGCTAGGGGACAAGG---GAAGATCAGG-------------GGGCTCC-C-AGCACCA----------------------------ATGTAGGTAGGTGtgcagaaaaaaagtttttgagagt-
i mm10.chr9                 I 2 I 118
s canFam3.chr3               58186838 200 +  91889043 TATCTGGTTCATCAGGGCAGGACCTTGGGCAGAAAGACCTCAGATGGGCCAGTTTCCTAA--GTGCTCCCCAGAGCCTGGGGACTGCA--GAGGG-AAAG----------G-----AGACAAGAGCATCAGCACCAGGATCCCTGGGACAACCCTCCC-CCACCCCCACAGTAGTGCTGTTCTGATGTGTATGTGTCCATACA-AGATTT------------CTTTTGAAGAGT
i canFam3.chr3              C 0 C 0
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e otoGar3.GL873530            5758253   2 -  36342412 I

a score=2350371.000000
s hg38.chr15_KI270850v1_alt      4797 254 +    430880 AGACCTGGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgagaaacgtgatctaattcaactctttcacattaacgatggggaaac---tgaggcccagtaagggatggactgttgagaatataaagcaatgttactgaagagactgaaaccatttgggggacttgagtcccagtctcagcactgccact--ctcactgtcactgtgtggctctaggccaatctctccacctctctgagcctccctttgctcTCTCACCTAGGAAGCAGTCTGGA
s panTro5.chr15              63452459 254 +  83230942 AGACCTGGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgagaaacgtgatctaattcaactctttcacattaacgatggggaaac---tgaggcccagtaagggatggactgttgagaatataaagcaatgttactgaagagactgaaaccatttgggggacttgagtcccagtctcagcactgccact--ctcactgtcactgtgtggctctaggccaatctctccacctctctgagcctccctttgctgtctcacctaggaagtagTCTGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23027563 254 -  99763055 AGACCTGGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgagaaatgtgatctaattcaactctttcacattaatgatggggaaac---tgaggcccagtaagggatggactgttgagaatatagagcaatgttactgaagagactgaaaccatttgggagacttgagtcccagtctcagcactgccact--ctcactgttactgtgtggctctaggccagtctctccacctctctgagcctccctttgctGTCTCACCTAGGAAGCAGTCTGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2520679 254 +   2806052 AGACCTGGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgagaaacgtgatctaattcaactctttcacattaacgatggggaaac---tgaggcccagtaagggatggactgttgagaatatagagcaatgttactgaagagactgaaaccatttgggggacttgagtcccagtctcagcactgccact--ctcactgtcactgtgtggctctaggccaatctctccacctctctgagcctccctttgctcTCTCACCTAGGAAGCAGTCTGGA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22688015 254 - 121039945 AGACCTGGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgagaaacgtgatctaattcaactctttcatattaatgatggggaaac---tgaggcccagcaagggatggactgttgagaatatagagcaatgttactgaagagactgaaaccatttgggggactggagtcccagtctcagcactgccact--ctcactgtcactgtgtggctctaggccagtctctccacctctctgagcctccctttgctcTCTCACCTAGGAAGCAGTCTGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113283924 254 - 169600520 AGACCTGGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgagaaacgtgatctaattcaactttttcacattaacaatggggaaac---tgaggcccagcaagggatggagtattgagaatatagagcaatgttactgaagagactgaaatcatttgggggacttgagttccagtctcagcactgtcatt--cttactgtcactgtgtggctctaggccagcctgtctacctctctgagcctccctttgctcTCTCACCTAGGAAGCAGTCTGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114628987 254 - 171882078 AGACCTGGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgagaaacgtgatctaattcaactttttcacattaacaatggggaaac---tgaggcccagcaagggctggagtattgagaatatagagcaatgttactgaagagactgaaatcatttgggggacttgagttccagtctcagcactgtcatt--cttactgtcactgtgtggctctaggccagcctgtctacctctctgagcctccctttgctcTCTCACCTAGGAAGCAGTCTGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3876298 254 +   4820037 AGACCTGGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgagaaacgtgatctaattcaactttttcacattaacaatggggaaac---tgaggcccagcaagggctggagtattgagaatatagagcaatgttactgaagagactgaaatcatttgggggacttgagttccagtctcagcactgtcatt--cttactgtcactgtgtggctctaggccagcctgtctacctctctgagcctccctttgctcTCTCACCTAGGAAGCAGTCTGGA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9743808 254 +  10730278 AGACCTGGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgagaaacgtgatctaattcaactttttcacattaacaatggggaaac---tgaggcccagcaagggctggagtattgagaatatagagcaatgttactgaagagactgaaatcatttgggggacttgagttccagtctcagcactgtcatt--cttactgtcactgtgtggctctaggccagcctgtctacctctctgagcctccctttgctcTCTCACCTAGGAAGCAGTCTGGA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4591832 254 +  58131712 AGACCTGGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgagaaacgtgatctaattcaactttttcacattaacgatggggaaac---tgaggcccagcaagggctggagtgttgagagtatagagcaatgttactgaagagactgaaatcatttgggggacttgagttccagtctcagcactgtcatt--cttactgtcactgtgtggctctaggccagtctgtctacctctctgagcctccctttgctcTCTCACCTAGGAAGCAGTCTGGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3858493 254 +   4030761 AGACCTGGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgagaaacgtgatctaattcaactttttcacattaacaatggggaaac---tgaggcccagcaagggctggagtattgagaatatagagcaatgttactgaagagactgaaatcatttgggggacttgagttccagtctcagcactgtcatt--cttactgtcactgtgtggctctaggccagcctgtctacctctctgagcctccctttgctcTCTCACCTAGGAAGCAGTCTGGT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3990855 254 +   5013933 AGACCTGGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgagaaacgtgatctaattcaactttttcacattaacgatggggaaac---tgaggcccagcaagggatggagtattgagaatatagagcaatgttactgaagagactgaaatcatttgggggatttgagtcccagtctcagcactgtcatt--cttactgtcactgtgtggctctaggccagtctgtctacctctctgagcctccctttgctcTCTCACCTAGGAAGCAGTCTGGA
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              41992 251 -    125141 AGACCTCGTGGCCAaa------------------------------------------------------------gagatt--------------------------tgacaaacgtgatctaattcaactccttcaca-taacaatggggaaac---tgaggcccagcaagggacggattgttgagaatacagaacaatgttactga--agactgaagccatttggggaacttgagtcccagtctcagctctgcctct--ctcactgtcactgtgtgactctaggccaggctctccccctctctgagcctccctttgctcTCTCACCTAGGAAGCAGTCTGGa
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        57201 251 +  11725426 AGACCTCATGGCCgaa------------------------------------------------------------gagatt--------------------------tgacaaacgtgatataattcaactccttcacg-taacgacggggaaac---tgaggcccagcaatggatggattgttgagaatacagagcagtgttactga--agactgaagccatttagggagcttgagtcccagtcgcagctctgccact--ctcactgtcactgtgtaaccctaggccaggctctccccctctctgagcctccctttgctcTCTCACCTAGGAAGCAGTCTGGa
i cebCap1.NW_016107334v1    C 0 I 1741
s aotNan1.NW_018503093v1       651887 247 +    730879 AGACCTCGTGACCAaa------------------------------------------------------------gagatt--------------------------tgacaaacgtgatctaattcaactccttcaca-taacaatggggaaactgatgaggctcagcaaagggtggattgttgagaatacaga-----gttactga--agaccgaagccgtttggggaacttgagtcccggtctcagctctgccact--ctcactgtcactgtgtgactctaggccacgctct--ccctctctgagcccccctttgctcTCTCACCTGGGAAGCAGTCTGGa
i aotNan1.NW_018503093v1    C 0 C 0
s mm10.chr9                  90167249 307 + 124595110 aaagctggtgattacactcaggctcacacacttgtatgcatgctatccatcactctgccgtcggagccgtatcccTGAGATTCCTTCTGAAGGCTAGCTATGGACTTCTAGGAAACCTG-TCTAGTCAAATTTCTTCA---TACCGATGG---------CGAG-------AAAGGACAGCTGTCTGAGAGTATAGATGGATAGTACTGAAGA----GAAGCCATTTGGGAAA---------CAGGGTCAGGTCT-TCATTCCCTCATTCTCAGTGTGTGGCTTTAGCTTA----CTCTGCCTCTCGGAGTCCTCATTTACTCTCTTACCTGGCAGGCAGTCTGAT
i mm10.chr9                 I 118 I 1
s canFam3.chr3               58187038 196 +  91889043 AGATCTGGTGGCTAAA------------------------------------------------------------GAAGTT--------------------------TGAAACACTTAatctggtgcaactcctttatgtgagcgatgaggaaac-----aggcctagcaaggaacgggctgctgagaatgcagaacgatgttcccg-------------------ggggacttggagcccaatct---------------gctactctcgctttgtgGCTCAAGGCCGG-CTGTGTTCCTCTCTGAGCCT-----------------------GCAGCCTGCA
i canFam3.chr3              C 0 C 0
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e otoGar3.GL873530            5758253   2 -  36342412 I

a score=936384.000000
s hg38.chr15_KI270850v1_alt      5051 131 +    430880 CACCCTACTGCAGGTGTCCTAACCTGGGGTCCACAGCCTAAGGG-ACCGTg----aactgaggggatccatgagcttgaatgggaaaatattacatatttactttttgtaacctctcaatgaaatttagtatttcc
s panTro5.chr15              63452713 131 +  83230942 CACCCTACTGcaggtgtcctaacctggggtccacagcctaaggg-accatg----aactcaggggatccatgagcttgaatgggaaaatattacatatttactttttgtaacctctcagtgaaatttagtatttcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23027817 131 -  99763055 CACCTTACTGcaggtgtcctaacctggggtccacagcctaaggg-accgtg----aactgaggggatccatgaacttgaatgggaaaatattacatatttactttttgtaatctctcaacaaaatttagcatttcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2520933 131 +   2806052 CACCCTACTGcaggtgtcctaacctggggtccacagcctaaggg-accatg----aactcaggggatccatgagcttgaatgggaaaatattacatatttactttttgtaacctctcaatgaaatttagtatttcc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22688269 131 - 121039945 CACCCTACTGcaggtgtcctaacctggggtccacagcctaaagg-actatg----aactgaggggatccatgaacttgaatgggaaaatattacatatttactttttgtaacctctcaatgaaatttagcatttcc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113284178 131 - 169600520 CACCTTACTGCAGGTGtcctaacctgggcttcacagcctaaggg-actgtg----aactcaggggatccatgaacttgaatgggaaaatattacatatttactttttgtaacctctcaaagaaatttagcatttcc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114629241 131 - 171882078 CACCTTACTGCAGGTGTCCTAACCTGGGCTTCACAGCCTAAGGG-ACTGTg----aactcaggggatccatgaacttgaatgggaaaatattacatatttactttttgtaacctctcaaagaaatttagcatttcc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3876552 131 +   4820037 CACCTTACTGcaggtgtcctaacctgggcttcacagcctaaggg-actgtg----aactcaggggatccatgaacttgaatgggaaaatattacatatttactttttgtaacctctcaaagaaatttagcatttcc
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9744062 131 +  10730278 CACCTTACTGcaggtgtcctaacctgggcttcacagcctaaggg-actgtg----aactcaggggatccatgaacttgaatgggaaaatattacatatttactttttgtaacctctcaaagaaatttagcatttcc
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4592086 131 +  58131712 CATCTTACTGCAGGTGTCCTAACCTGGGCTTCACAGCCTAAGGG-ACTGTg----aactcaggggatccatgaacttgaatgggaaaatattacatatttactttttgtaacctctcaaagaaatttagcttttcc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3858747 131 +   4030761 CACCTTACTGcaggtgtcctaacctgggcttcacagcctaaggg-actgtg----aactcaggggatccatgaacttgaatgggaaaatattacatatttactttttgtaacctctcaaagaaatttagcatttcc
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3991109 129 +   5013933 CACCTTACTGCAGGTGTCCTAACCTgggcttcacagcctgaggg-actgtg----gactca--ggatccatgaacttgaatgggaaaatattacatatttactttttgtaacctctcaaagaaatttagcatttcc
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              42243  82 -    125141 --------------------------------------------------g----acctcaggggagccatgaacttgaaggggaaaatattacatattttctttttgtaaccgctcaatgaaatttaccatttcc
i saiBol1.JH378378          C 0 I 2926
s aotNan1.NW_018503093v1       652134  46 +    730879 --------------------------------------------------g----acctcaggggatccatgaacttgaatgggaaaatatta------------------------------------catttcc
i aotNan1.NW_018503093v1    C 0 C 0
s mm10.chr9                  90167557 131 + 124595110 TACCTTATTCTTGGTGCCCTAACCTAGAGTCTTCAGCCTGAGGGAACCACA----AATTCCAGGAAGCAATGAACCTGGATTGGAAAATATAACACCCACAACTTTTATAACCTC-AAGTGATATTTAGCATTTTT
i mm10.chr9                 I 1 I 1
s canFam3.chr3               58187234 129 +  91889043 GATTTTCCCACGGGTGTCCTCCCCTGGACTCCACAGCCCCAGGG-ACGtgggcaaaatttagaggatccataaactctgatgggaagatattacgtctttaagttcttttacttct------aagttagcatttcc
i canFam3.chr3              C 0 C 0
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e cebCap1.NW_016107334v1        57452 1741 +  11725426 I
e otoGar3.GL873530            5758253   2 -  36342412 I

a score=183779.000000
s hg38.chr15_KI270850v1_alt      5182 23 +    430880 ctcaattatgaatattattagca
s panTro5.chr15              63452844 23 +  83230942 ctcaattatgaatattattagca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23027948 23 -  99763055 ctcaattatgaatattactagca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2521064 23 +   2806052 ctcaattatgaatattattagca
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22688400 23 - 121039945 ctcaattatgaatattattagca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113284309 23 - 169600520 ctcaattatgaatatcattagca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114629372 23 - 171882078 ctcaattatgaatatcattagca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3876683 23 +   4820037 ctcaattatgaatatcattagca
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9744193 23 +  10730278 ctcaattatgaatatcattagca
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4592217 23 +  58131712 ctcaattatgaatatcattagca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3858878 23 +   4030761 ctcaattatgaatatcattagca
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3991238 23 +   5013933 ctcaattatgaatatcattagca
i colAng1.NW_012114844v1    C 0 C 0
s aotNan1.NW_018503093v1       652180 23 +    730879 ctcaattatgaatattattagca
i aotNan1.NW_018503093v1    C 0 C 0
s mm10.chr9                  90167689 23 + 124595110 TTTGATTATAGATAAGATTAACA
i mm10.chr9                 I 1 I 960
s canFam3.chr3               58187363 23 +  91889043 ttcaattttgcatgttagcacca
i canFam3.chr3              C 0 C 0
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e cebCap1.NW_016107334v1        57452 1741 +  11725426 I
e otoGar3.GL873530            5758253  2 -  36342412 I
e saiBol1.JH378378              42325 2926 -    125141 I

a score=390182.000000
s hg38.chr15_KI270850v1_alt      5205 56 +    430880 aatcccaac---------agcacctgtgattttgttaccaatagaacaaaccaaatatttttcta
s panTro5.chr15              63452867 56 +  83230942 aatcccaac---------agcacctgtgattttgttaccaatagaacaaaccaaatatttttcta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23027971 56 -  99763055 aatcccaac---------agcacctgtggttttgttaccaatacagcaaaccaaatatttttcta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2521087 56 +   2806052 aatcccaac---------agcacctgtgattttgttaccaatagaacaaaccaaatatttttcta
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22688423 56 - 121039945 aatcccaac---------agcacctgtggttttgttaccaatacagcaaaccaaatatttttcca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113284332 56 - 169600520 aatcccaac---------agcacctgtggttttgttaccaatagaacaaaccaaatatttttcta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114629395 56 - 171882078 aatcccaac---------agcacctgtggttttgttaccaatagaacaaaccaaatatttttcta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3876706 56 +   4820037 aatcccaac---------agcacctgtggttttgttaccaatagaacaaaccaaatatttttcta
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9744216 56 +  10730278 aatcccaac---------agcacctgtggttttgttaccaatagaacaaaccaaatatttttcta
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4592240 56 +  58131712 aatcccaac---------agcacctgtggttttgttaccaatagaacaaaccaaatatttttcta
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3858901 56 +   4030761 aatcccaac---------agcacctgtggttttgttaccaatagaacaaaccaaatatttttcta
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3991261 56 +   5013933 aatcccaac---------agcacctgtggttttgttaccaatagaacaaaccaaatacttttcta
i colAng1.NW_012114844v1    C 0 C 0
s aotNan1.NW_018503093v1       652203 50 +    730879 catcccaat---------agcacc-gtgatttcgttgccaatagaa-----caggtatttttcta
i aotNan1.NW_018503093v1    C 0 C 0
s canFam3.chr3               58187386 65 +  91889043 aactacaatagcattaggagcatctgtgactttgttaccgagctagaaaaccaaaccattttTTA
i canFam3.chr3              C 0 I 350
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e cebCap1.NW_016107334v1        57452 1741 +  11725426 I
e otoGar3.GL873530            5758253  2 -  36342412 I
e saiBol1.JH378378              42325 2926 -    125141 I

a score=2281674.000000
s hg38.chr15_KI270850v1_alt      5261 350 +    430880 tctcattacagttgttgcatgtatcttgaaataaggtttacgttcatcactacttcaaaatttccgtagttgctgggcatagtggctcacgcctataatcccagcacttttggaggctgaggtgagtggatcacttgaggccaggagttcaagaccagcctttccaacatggcaaaaccccatctctactaaaaatacaaaaacttgctgggtgtggtggtacgtgcctgtaatcccagctactcgcgaggctaagggacaagaattgcttgaacctgggaggcaggggttgcggtgagccaagattgag-ctact--------gtactccagcc--tgggtgac-agagagagactctgtc
s panTro5.chr15              63452923 350 +  83230942 tctcattacagttgttgcatgtatcttgaaataaggtttacgttcatcactacttcaaaatttccgtagttgctgggcatagtggctcacgcctataatcccagcacttttggaggctgaggtgagtggatcacttgaggccaggagttcaagaccagcctttccaacatggcaaaaccccatctctactaaaaatacaaaaacttgctgggtgtggtggtacatgcctgtaatcccagctacttgcgaggctaagggacaagaattgcttgaacctgggaggcaggggttgcggtgagccaagattgag-ctact--------gtactccagcc--tgggtgac-agagagagactctgtc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23028027 350 -  99763055 tctcattacagttgttgcatgtatcttgaaataaggtttacgttcatcactacttcaaaatgtccatagttgccaggcacagtggctcacgcctgtaatcctagcacttttggaggctgaggtgagtggatcactagaggccaggagttcaagaccagccttgccaacatggcaaaaccccgtctctactaaaaatacaagaactcgctgggagtgatggcatgcacctgtagtcccagctacttgaaaggctaagagacaagaattgcttgaacctgggaggcagaggttgcagtgagccaagattgag-ctact--------gcattacaccc--tgggtgac-agagagagactctgcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2521143 349 +   2806052 tctcattacagttgttgcacgtatcttgaaataaggtttacgttcatcactacttc-aaatttccgtagttgctgggcatagtggctcacgcctataatcccagcacttttggaggctgaggtgagtggatcacttgaggcctggagttcaagaccagcctttccaacatggcaacaccccatctctactaaaaatacaaaaacttgctgggtgtggtggtacgtgcctgtaatcccagctacttgcgaggctaagggacaagaattgcttgaacctgggaggcaggggttgcggtgagccaagattgag-ctact--------gtactccagcc--tgggtgac-agagagagactctgtc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22688479 350 - 121039945 tctcattacagttgttgcacgtatcttgaaataaggtttacgttcatcactacttcaaaatttccatagttgctgggcacagtggctcatgcctgtagtcccagcacttttggaggctgaggtaagtggatcactaaaggccaggagttcaagaccagccttgccaacatggcaaaacccagtctctactaaaaatacaaaaactcgctgggtgtggtggcatgcacctgtagtcccagctatttgaaaggctaagagacaagaattgcttgaacctgggaggcagaggttgcagtgagccaagattgag-ctact--------gcactgcaccc--tgggtgac-agagagagactctgtc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113284388 350 - 169600520 tctcattacgattgttgcacatatcttgaaataaggtttacgttcatcactacttcaacatttccatagttgcccggcatagtggctcatgcctgtaatcccagcacttttggaggctgaggtaagtggatcactcaaggtcaggagttcaagaccagccttgccaacatggcaaaaccctgtgtctactaaaaatacaaaaacttgctaggtgtaatggcatgcacctatagtcccagctacttgaaaggctaagggacaagaattgcttgaacctaggaggcagaggttgtgttgagccaagattgag-ctact--------gcactacagcc--tgggtgac-agagagagactctgtc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114629451 350 - 171882078 tctcattacgattgttgcacatatcttgaaataaggtttacgttcatcactacttcaacatttccatagttgcccggcatagtggctcatgcctgtaatcccagcacttttggaggctgaggtaagtggatcactcaaggtcaggagttcaagaccagccttgccaacatggcaaaaccctgtctctactaaaaatacaaaaacttgctaggtgtaatggcatgcacctatagtcccagctacttgaaaggctaagggacaagaattgcttgaacctaggaggcagaggttgtgttgagccaagattgag-ctact--------gcactacagcc--tgggtgac-agagagagactctgtc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3876762 354 +   4820037 tctcattacgattgttgcacatatcttgaaataaggtttacgttcatcactacttcaacatttctatagttgcccggcatagtggctcatgcctgtaatcccagcacttttggaggctgaggtaagtggatcactcaaggtcaggagttcaagaccagccttgccaacatggcaaaaccctgtctctactaaaaatacaaaaacttgctaggtgtaatggcatgcacctatagtcccagctacttgaaaggctaagggacaagaattgcttgaacctaggaggcagaggttgtgttgagccagaattgagcctact--------gcactacagccgatgggtgacaagagagagactctgtc
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9744272 350 +  10730278 tctcattacgattgttgcacgtatcttgaaataaggtttacgttcatcactacttcaacatttccatagttgcccggcatagtggctcatgcctgtaatcccagcacttttggaggctgaggtaagtggatcactcaaggtcaggagttcaagaccagccttgccaacatggcaaaaccctgtctctactaaaaatacaaaaacttgctaggtgtaatggcatgcacctatagtcccagctacttgaaaggctaagggacaagaattgcttgaacctaggaggcagaggttgtgttgagccaagattgag-ctact--------gcactacagcc--tgggtgac-agagagagactctgtc
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4592296 350 +  58131712 tctcattacgattgttgcacgtatcttgaaataaggtttacgttcatcactacttcaacatttccatagttgcccggcatagtggctcatgcctgtaatcccagcacttttggaggctgaggtaagtggatcactcaaggccaggagttcaagaccagccttgccaacatggcaaaaccctgtctctactaaaaatacaaaaacttgctaggtgtaatggcatgcacctatagtcccagctacttgaaaggctaagggacaagaattgcttgaacctaggaggcagaggttgtgttgagccaagattgag-ctact--------gcactacagcc--tgggtgac-agagagagactctgtc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3858957 350 +   4030761 tctcattacgattgttgcacgtatcttgaaataaggtttacgttcatcactacttcaacatttccatagttgcccggcatagtggctcatgcttgtaatcccagcacttttggaggctgaggtaagtggatcactcaaggtcaggagttcaagaccagccttgccaacatggcaaaaccctgtctctactaaaaatacaaaaacttgctaggtgtaatggcatgcacctatagtcccagctacttgaaaggctaagggacaagaattgcttgaacctaggaggcagaggttgtgttgagccaagattgag-ctact--------gcactacagcc--tgggtgac-agagagagactctgtc
i manLeu1.NW_012102632v1    C 0 I 5915
s colAng1.NW_012114844v1      3991317 358 +   5013933 tctcattacggttgttgcatgtatcttgaaataaagtttacgttcatcactacttcaacatttccatagttgcccggcatagtggctcatgcctgtaatcccagcacttttggaggctgaggtaagtggatcactcaaggccaggagttcaagaccagccttgccaacatggcaaaaccctgtctctactaaaaatacaaaaacttgctaggtataatggcgtgcacctatagtcccagctacttgaaaggctaaggaacaagaattgcttgaacctgggaggcagaggttgtgttgagccaagattgag-ctactgtactacagcactacagcc--tgggtgac-agagagagactctgtc
i colAng1.NW_012114844v1    C 0 C 0
s aotNan1.NW_018503093v1       652253 350 +    730879 tctcattacagttgttgcacatatcttgaaataaggtttccattcatcactactacaaaattaccatagttgccgggcacggtggctcacgctcaaaatcccagcccttttggaggctgagatgaacggatcacttgaggccaggagttcaagaccagcctcgccaacatggcaaaaccccatctttactaaaaatacaaaaactcgctgggtgtggtggcacgcgcctgtagtcccagcgacttgggaggctaagagacaagaatcgcttgaacctgggaggtggagtctgtggtgagccaggattaag-ctact--------gtactatggcc--tgggtgac-agagggaaactctgtc
i aotNan1.NW_018503093v1    C 0 C 0
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e canFam3.chr3               58187451 350 +  91889043 I
e cebCap1.NW_016107334v1        57452 1741 +  11725426 I
e otoGar3.GL873530            5758253   2 -  36342412 I
e saiBol1.JH378378              42325 2926 -    125141 I

a score=61355.000000
s hg38.chr15_KI270850v1_alt      5611 28 +    430880 tca----aaa-----------aaaaaaaaaaaaaaaaccatag
s panTro5.chr15              63453273 25 +  83230942 tc-------a-----------aaaaaaaaaaaaaaaaccatag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23028377 23 -  99763055 tc--------------------aaaaaaaaaaaaagaccatag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2521492 26 +   2806052 tc------aa-----------aaaaaaacacaaaaaaccatag
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22688829 24 - 121039945 tc-------------------aaataaaaaaaaaagaccatag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113284738 41 - 169600520 --acaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccatag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114629801 32 - 171882078 --acaaaaaa---------caaaaaacaaaaacaaaaccatag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3877116 31 +   4820037 --acaaaaaa----------aaaaaaaacaaacaaaaCCATAG
i macNem1.NW_012011533v1    C 0 I 21
s cerAty1.NW_011999477v1      9744622 30 +  10730278 --acaaaaaa-----------aaaaaaaaaaaaaaaaccatag
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4592646 22 +  58131712 ---------------------acacccaacaaaaaaaccatag
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012114844v1      3991675 35 +   5013933 --tcaaaaaa------aaaaaaaaaaaaaaacaaaaaccatag
i colAng1.NW_012114844v1    C 0 C 0
s aotNan1.NW_018503093v1       652603 30 +    730879 --tcaaaaaa-----------aaaaaaaaaaaaaTGACCATAG
i aotNan1.NW_018503093v1    C 0 C 0
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e canFam3.chr3               58187451 350 +  91889043 I
e cebCap1.NW_016107334v1        57452 1741 +  11725426 I
e otoGar3.GL873530            5758253  2 -  36342412 I
e manLeu1.NW_012102632v1      3859307 5915 +   4030761 I
e saiBol1.JH378378              42325 2926 -    125141 I

a score=64379.000000
s hg38.chr15_KI270850v1_alt      5639 16 +    430880 ttgtttaatttgccag
s panTro5.chr15              63453298 16 +  83230942 ttgtttaatttgccag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23028400 16 -  99763055 ttgttaaatttgccac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2521518 16 +   2806052 ttgtttaatttgccag
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22688853 16 - 121039945 ttgttaaatttgccac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113284779 16 - 169600520 ttgttaaatatgccac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114629833 16 - 171882078 ttgttaaatatgccac
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9744652 16 +  10730278 ttgttaaatatgccac
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4592668 16 +  58131712 ttgttaaatatgccac
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012114844v1      3991710 16 +   5013933 ttgttaaatatgccac
i colAng1.NW_012114844v1    C 0 C 0
s aotNan1.NW_018503093v1       652633 16 +    730879 CTGTTAAATTTGCCAC
i aotNan1.NW_018503093v1    C 0 C 0
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e canFam3.chr3               58187451 350 +  91889043 I
e cebCap1.NW_016107334v1        57452 1741 +  11725426 I
e otoGar3.GL873530            5758253  2 -  36342412 I
e manLeu1.NW_012102632v1      3859307 5915 +   4030761 I
e macNem1.NW_012011533v1      3877147 21 +   4820037 I
e saiBol1.JH378378              42325 2926 -    125141 I

a score=312515.000000
s hg38.chr15_KI270850v1_alt      5655 65 +    430880 aaaatcttgtttaaagtataattccacaccctactttttaaattattttttgttttgttatgttt
s panTro5.chr15              63453314 65 +  83230942 aaaatcttgtttaaagtataattccacaccctactttttaaattattttttgttttgttatgttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23028416 65 -  99763055 aaaatcttgtttaaagtataattccacaccctactttttaaattattttttgttttgttatgttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2521534 64 +   2806052 aaaatcttgtttaaagtataattccacaccctactttttaaatta-tttttgttttgttatgttt
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22688869 65 - 121039945 aaaatcttgtttaaagtataattccacaccctactttttaaattattttttgttttgttacattt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113284795 58 - 169600520 aaaatcttgtttaa-------ttccacaccctactttttaaattattttttgttttgttatgttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114629849 58 - 171882078 aaaatcttgtttaa-------ttccacaccctactttttaaattattttttgttttgttatgttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3877168 58 +   4820037 AAAATCTTGTTTAA------TTTCCACA-CCTACTTTTTAAAttattttttgttttgttatgttt
i macNem1.NW_012011533v1    I 21 C 0
s cerAty1.NW_011999477v1      9744668 58 +  10730278 aaaatcttgtttaa-------ttccacaccctactttttaaattattttttgttttgttatgttt
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4592684 58 +  58131712 aaaatcttgtttaa-------ttccacaccctactttttaaattattttttgttttgttatgttt
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012114844v1      3991726 65 +   5013933 aaaatcttgtttaaagtttaattctacaccctacttttaaaattattttttgttttgttatgttt
i colAng1.NW_012114844v1    C 0 C 0
s aotNan1.NW_018503093v1       652649 64 +    730879 AAAATCCTGTTTAAAGTATAATTCCACA-CCTGCTTTTTAACTTACTTTTTGTTTTGTTTTGTTT
i aotNan1.NW_018503093v1    C 0 I 2048
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e canFam3.chr3               58187451 350 +  91889043 I
e cebCap1.NW_016107334v1        57452 1741 +  11725426 I
e otoGar3.GL873530            5758253  2 -  36342412 I
e manLeu1.NW_012102632v1      3859307 5915 +   4030761 I
e saiBol1.JH378378              42325 2926 -    125141 I

a score=293261.000000
s hg38.chr15_KI270850v1_alt      5720 69 +    430880 tgtttttgagataatg-tctcactct-atca-cctaggctggagtgca---gtggcatcatcatggctcactgca
s panTro5.chr15              63453379 69 +  83230942 tgtttttgagataata-tctcactct-atca-cctaggctggagtgca---gtggcatcatcatggctcactgca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23028481 69 -  99763055 catttttgagataatg-tctcactct-atca-cctaggctggagtgca---gtggcgccatcatgactcactgca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2521598 69 +   2806052 tgtttttgagataatg-tctcactct-atca-cctaggctggagtgca---gtggcatcatcatggctcactgca
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22688934 69 - 121039945 tgtttttgagataatg-tctcactct-gtca-cccaggctggagtgca---atggcgccatcatggctcactgca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113284853 69 - 169600520 tgttttttagataatg-tctcactct-gtca-cccaggctggagtaca---atggtaccatcatggctcactgca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114629907 69 - 171882078 tgttttttagataatg-tctcactct-gtca-cccaggctggagtaca---atggtaccatcatggctcactgca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3877226 75 +   4820037 tgtttttatagtaatgttcttactctggtcaccccaggctggagtacatggatggtaccatcatggctcacggca
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9744726 68 +  10730278 tgttttttagataatg-tctca-tct-gtca-cccaggctggagtaca---atggtaccatcatggctcactgca
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4592742 69 +  58131712 tgttttttagataatg-tctcactct-gtca-cccaggctggagtacg---atggtaccatcatggctcactgca
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012114844v1      3991791 69 +   5013933 tgttttttagataatg-tctcactct-gtca-cccaggctggagtgca---atggcaccatcatggctcactgca
i colAng1.NW_012114844v1    C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e canFam3.chr3               58187451 350 +  91889043 I
e cebCap1.NW_016107334v1        57452 1741 +  11725426 I
e otoGar3.GL873530            5758253  2 -  36342412 I
e manLeu1.NW_012102632v1      3859307 5915 +   4030761 I
e saiBol1.JH378378              42325 2926 -    125141 I

a score=353514.000000
s hg38.chr15_KI270850v1_alt      5789 70 +    430880 gcctcgacctcctgggctcaagagagcctcccatctcaacattccaagtagttgggacta-caggtgtgca
s panTro5.chr15              63453448 70 +  83230942 gcctcgaccttctgggctcaagagagcctcccacctcaacattccaagtagctgggacta-caggtgtgca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23028550 70 -  99763055 gcctcgacctcctgggctcaagagagcctcccacctcagcattccaagtagctgggacta-taggtgtgca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2521667 70 +   2806052 gcctcgacctcctgggctcaagagagcctcccacctcaacattccaagtagctgggacta-caggtgtgca
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22689003 69 - 121039945 gcctcgacctcctgggctcaagagagcctcccacctcagcattccaag-acctgggactg-caggtgtgca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113284922 70 - 169600520 gccttgacctcctgggctcaagagagcctcccacctcagcattccaagtagctgggacta-caggtgtgca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114629976 70 - 171882078 gccttgacctcctgggctcaagagagcctcccacctcagcattccaagtagctgggacta-caggtgtgca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3877301 71 +   4820037 gccttgcgctcctgggctcaagagagcctccacctccagcattccaagtagctggacggatcaggtgtgca
i macNem1.NW_012011533v1    C 0 I 55
s cerAty1.NW_011999477v1      9744794 70 +  10730278 gccttgacctcctgggctcaagagagcctcccacctcagcattccaagtagctgggacta-caggtgtgta
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4592811 70 +  58131712 gtcttgacctcctgggctcaagagagcctcccacctcagcattccaagtagctgggacta-caggtgtgca
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012114844v1      3991860 70 +   5013933 gcctcgacctcctgggcttaagagagcctcccacctcagcattccaagtagctgggacta-caggtgtgca
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              45251 68 -    125141 gtctcgatctcttgacctT--gtgatccacccgcctcagcctcccaaagtgctgggatta-caggtgtgag
i saiBol1.JH378378          I 2926 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e canFam3.chr3               58187451 350 +  91889043 I
e cebCap1.NW_016107334v1        57452 1741 +  11725426 I
e otoGar3.GL873530            5758253  2 -  36342412 I
e manLeu1.NW_012102632v1      3859307 5915 +   4030761 I

a score=40258.000000
s hg38.chr15_KI270850v1_alt      5859 18 +    430880 ccatcatgcctggc-----------taa---t
s panTro5.chr15              63453518 18 +  83230942 ccatcatgcctggc-----------taa---t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23028620 18 -  99763055 ccaccttgcctggc-----------tta---a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2521737 18 +   2806052 tcatcatgcctggc-----------taa---t
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22689072 18 - 121039945 ccatcatgcctggc-----------taa---t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113284992 17 - 169600520 ccaccttgcctggc-----------taa----
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              114630046 17 - 171882078 ccaccttgcctggc-----------taa----
i macFas5.chr7              C 0 I 1
s cerAty1.NW_011999477v1      9744864 18 +  10730278 ccaccttgcctggc-----------taat---
i cerAty1.NW_011999477v1    C 0 I 16
s chlSab2.chr26               4592881 18 +  58131712 ccaccttgcctggc-----------taa-t--
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012114844v1      3991930 18 +   5013933 ccaccttgcctggc-----------tga--t-
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              45319 28 -    125141 ccaccatgcctggcccttttttttttac----
i saiBol1.JH378378          C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e canFam3.chr3               58187451 350 +  91889043 I
e cebCap1.NW_016107334v1        57452 1741 +  11725426 I
e otoGar3.GL873530            5758253  2 -  36342412 I
e manLeu1.NW_012102632v1      3859307 5915 +   4030761 I
e macNem1.NW_012011533v1      3877372 55 +   4820037 I

a score=-1912.000000
s hg38.chr15_KI270850v1_alt      5877 13 +    430880 tttgta--------tgtgtgt
s panTro5.chr15              63453536 21 +  83230942 tttgtatgtgtgtgtgtgtgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23028638 13 -  99763055 tttttt--------tttttnt
i panPan2.chr15             C 0 I 11
s gorGor5.CYUI01000037v1      2521755 13 +   2806052 tttgta--------tgtgtgt
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22689090  9 - 121039945 tttttt--------ttt----
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26               4592899  7 +  58131712 --------------ttttttt
i chlSab2.chr26             C 0 I 38
s saiBol1.JH378378              45347  7 -    125141 ttttta--------t------
i saiBol1.JH378378          C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e canFam3.chr3               58187451 350 +  91889043 I
e cebCap1.NW_016107334v1        57452 1741 +  11725426 I
e otoGar3.GL873530            5758253  2 -  36342412 I
e colAng1.NW_012114844v1      3991948  0 +   5013933 C
e manLeu1.NW_012102632v1      3859307 5915 +   4030761 I
e cerAty1.NW_011999477v1      9744882 16 +  10730278 I
e macNem1.NW_012011533v1      3877372 55 +   4820037 I
e macFas5.chr7              114630063  1 - 171882078 I
e rheMac8.chr7              113285009  1 - 169600520 I

a score=-1300.000000
s hg38.chr15_KI270850v1_alt      5890 19 +    430880 gtgtgtgtgtgtgtgtgtg
s panTro5.chr15              63453557 19 +  83230942 gtgtgtgtgtgtgtgtgtg
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2521768 19 +   2806052 gtgtgtgtgtgtgtgtgtg
i gorGor5.CYUI01000037v1    C 0 C 0
s rheMac8.chr7              113285010 13 - 169600520 atatatatatata------
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              114630064 13 - 171882078 atatatatatatt------
i macFas5.chr7              I 1 C 0
s chlSab2.chr26               4592944 13 +  58131712 atttttttttttt------
i chlSab2.chr26             I 38 I 8
s colAng1.NW_012114844v1      3991948  5 +   5013933 -------ttttt-------
i colAng1.NW_012114844v1    C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e canFam3.chr3               58187451 350 +  91889043 I
e cebCap1.NW_016107334v1        57452 1741 +  11725426 I
e otoGar3.GL873530            5758253  2 -  36342412 I
e panPan2.chr15              23028651 11 -  99763055 I
e manLeu1.NW_012102632v1      3859307 5915 +   4030761 I
e cerAty1.NW_011999477v1      9744882 16 +  10730278 I
e macNem1.NW_012011533v1      3877372 55 +   4820037 I
e nomLeu3.chr6               22689099  0 - 121039945 C
e saiBol1.JH378378              45354  0 -    125141 C

a score=27567.000000
s hg38.chr15_KI270850v1_alt      5909 10 +    430880 tctgtgtagc
s panTro5.chr15              63453576 10 +  83230942 tctgtgtagc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2521787 10 +   2806052 tctgtgtagc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22689099 10 - 121039945 tttttgtagc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113285023 10 - 169600520 tttttgtagc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114630077 10 - 171882078 tttttgtagc
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9744898 10 +  10730278 tttttgtagc
i cerAty1.NW_011999477v1    I 16 C 0
s chlSab2.chr26               4592965 10 +  58131712 tttttgtagc
i chlSab2.chr26             I 8 C 0
s colAng1.NW_012114844v1      3991953  9 +   5013933 -ttttgtagc
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              45354  9 -    125141 tttttgaag-
i saiBol1.JH378378          C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e canFam3.chr3               58187451 350 +  91889043 I
e cebCap1.NW_016107334v1        57452 1741 +  11725426 I
e otoGar3.GL873530            5758253  2 -  36342412 I
e panPan2.chr15              23028651 11 -  99763055 I
e manLeu1.NW_012102632v1      3859307 5915 +   4030761 I
e macNem1.NW_012011533v1      3877372 55 +   4820037 I

a score=24518.000000
s hg38.chr15_KI270850v1_alt      5919 7 +    430880 gacaagg
s panTro5.chr15              63453586 7 +  83230942 gacaagg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23028662 7 -  99763055 gacaagc
i panPan2.chr15             I 11 C 0
s gorGor5.CYUI01000037v1      2521797 7 +   2806052 gacaagg
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22689109 7 - 121039945 gacaagt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113285033 7 - 169600520 aacaagg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114630087 7 - 171882078 aacaagg
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9744908 7 +  10730278 aacaagg
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4592975 7 +  58131712 aacaagg
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012114844v1      3991962 7 +   5013933 aacaagg
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              45363 6 -    125141 -atgggg
i saiBol1.JH378378          C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e canFam3.chr3               58187451 350 +  91889043 I
e cebCap1.NW_016107334v1        57452 1741 +  11725426 I
e otoGar3.GL873530            5758253 2 -  36342412 I
e manLeu1.NW_012102632v1      3859307 5915 +   4030761 I
e macNem1.NW_012011533v1      3877372 55 +   4820037 I

a score=245410.000000
s hg38.chr15_KI270850v1_alt      5926 45 +    430880 tcccattatg--ttgccca-gttggtcttgaactcctaggctcaagtg
s panTro5.chr15              63453593 45 +  83230942 tctcattatg--ttgccca-gttggtcttgaactcctaggctcaagtg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23028669 45 -  99763055 tcccattatg--ttgccca-gttggtcttgaactcctaggctcaagtg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2521804 45 +   2806052 tcccattatg--ttgccca-gttggtcttgaactcctaggctcaagtg
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22689116 45 - 121039945 tcccattatg--ttgcccc-gttggtcttgaactcctaggctcaagag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113285040 45 - 169600520 tcccattatg--ttgccca-gttggtcttgaactcctaggctcaagtg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114630094 45 - 171882078 tcccattatg--ttgccca-gttggtcttgaactcctaggctcaagtg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3877427 47 +   4820037 tcccattatgatatgccca-gttggccttgaactcctaggctcaagtg
i macNem1.NW_012011533v1    I 55 I 29
s cerAty1.NW_011999477v1      9744915 45 +  10730278 tcccattatg--ttgccca-gttggtcttgaactcctaggctcaagtg
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4592982 45 +  58131712 tcccattatg--ttgccca-gttggtcttgaactcctaggctcaagtg
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012114844v1      3991969 45 +   5013933 tcccattatg--ttgccca-gttggtcttgaactcctaggctcaagtg
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              45369 46 -    125141 tttcaccatg--ttgatcaggctggtcttgaactcccgacctcaggtg
i saiBol1.JH378378          C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e canFam3.chr3               58187451 350 +  91889043 I
e cebCap1.NW_016107334v1        57452 1741 +  11725426 I
e otoGar3.GL873530            5758253  2 -  36342412 I
e manLeu1.NW_012102632v1      3859307 5915 +   4030761 I

a score=19190.000000
s hg38.chr15_KI270850v1_alt      5971  9 +    430880 atcctcccc-------------------------------------------------------
s panTro5.chr15              63453638  9 +  83230942 atcctcccc-------------------------------------------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23028714  9 -  99763055 atcctccca-------------------------------------------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2521849  9 +   2806052 atcctcccc-------------------------------------------------------
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22689161  9 - 121039945 atcctccca-------------------------------------------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113285085  9 - 169600520 atcctccca-------------------------------------------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114630139  9 - 171882078 atcctccca-------------------------------------------------------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9744960  9 +  10730278 atcctccca-------------------------------------------------------
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4593027  9 +  58131712 atcctccca-------------------------------------------------------
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012114844v1      3992014  9 +   5013933 atcctccca-------------------------------------------------------
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              45415 64 -    125141 atccgcccgccctggcctccaaagtgcttggattacaggtgtgagtcaccacgcccagccAAca
i saiBol1.JH378378          C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e canFam3.chr3               58187451 350 +  91889043 I
e cebCap1.NW_016107334v1        57452 1741 +  11725426 I
e otoGar3.GL873530            5758253  2 -  36342412 I
e manLeu1.NW_012102632v1      3859307 5915 +   4030761 I
e macNem1.NW_012011533v1      3877474 29 +   4820037 I

a score=22627.000000
s hg38.chr15_KI270850v1_alt      5980 5 +    430880 ccttg
s panTro5.chr15              63453647 5 +  83230942 ccttg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23028723 5 -  99763055 tctca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2521858 5 +   2806052 ccttg
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22689170 5 - 121039945 cctca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113285094 5 - 169600520 cctca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114630148 5 - 171882078 cctca
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9744969 5 +  10730278 cctca
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4593036 5 +  58131712 cctca
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012114844v1      3992023 5 +   5013933 cctca
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              45479 5 -    125141 cctcg
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        59193 5 +  11725426 cctcg
i cebCap1.NW_016107334v1    I 1741 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e canFam3.chr3               58187451 350 +  91889043 I
e otoGar3.GL873530            5758253 2 -  36342412 I
e manLeu1.NW_012102632v1      3859307 5915 +   4030761 I
e macNem1.NW_012011533v1      3877474 29 +   4820037 I

a score=1056082.000000
s hg38.chr15_KI270850v1_alt      5985 193 +    430880 ttctcccaaagttct-gggattacaag-tatgaacaacc-ttgcctggtcttaaat-tattttgataactgtatttcaatataa--tcaatttccttggtactcctgtgcatttattttatttattttattta-tt-ttttatg-gcagggtctccctctgtc---acccaggct--ggagtgcagtgatgcg-atctcggctcacta---------
s panTro5.chr15              63453652 193 +  83230942 ttctcccagagttct-gggattacaaa-tatgaacaacc-atgcctggtcttaaat-tattttgataactgtatttcaatataa--tcaatttccttggtactcctgtgcatttattttatttattttattta-tt-ttttatg-gcagggtctcactctgtc---gcccaggct--ggagtgcagtgatgtg-atctcggctcacta---------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23028728 190 -  99763055 ttctcccaaagttct-gggattacagg-tatgaacgact-atgcctggccttaaat-tattttgataactatatttcaatctaa--tcaatttccttggtactcctgta----tgttttattttatttatttattt-ttttgta-gcagggtctcactctgtc---gcccaggct--ggagtgcagtgatgcg-gtctcagctcacta---------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2521863 193 +   2806052 ttctcccaaagttct-gggattacaag-tatgaacaacc-atgcctggtcttaaat-tattttgataactgtatttcaatataa--tcaatttccttggtactcctgtgcatttattttatttattttattta-tt-ttttatg-gcagggtctcactctgtc---acccaggct--ggagtgcagtgatgcg-atctcggctcacta---------
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22689175 184 - 121039945 ttcttccaaagttct-gggactacagg-tatgaacgact-atgcctggccttaaat-tattttgataactgtatttc-----aa--tcagtttccttggtactcctgca----tattttattttatttatttt-tt-tgttgtg-gcagggtctcactctgtc---gcccaggct--ggagtgcagtgatgtg-gtctcggctcacta---------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113285099 189 - 169600520 ttctcccaaagttct-gggattacagg-tatgaacaacc-atgcctggccttaaat-tatttggataactatatttcaggataa--tcaatttccttggtacttctgtg----tattttattttatttattta-tt-ttttgtg-gcagggtctcactctgtc---acccaggct--ggagtgcagtgatgcg-atctcggctcacta---------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114630153 189 - 171882078 ttctcccaaagttct-gggattacagg-tatgaacaacc-atgcctggccttaaat-tatttggataactatatttcaggataa--tcaatttccttggtacttctgtg----tattttattttatttattta-tt-ttttgtg-gcagggtctcactctgtc---acccaggct--ggagtgcagtgatgcg-atctcggctcacta---------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3877503 198 +   4820037 ttctcccaaagttctgggggttacaggttatgaacaaccAATGCCTG--Cttaaatgtatttggataactatatttcaggataaagtcaatttccttgctacttctgtg----tg-ttaatttta-ttattta-ttgttttgtgagcagggtctcactctgcctcaccccaggctggggagtgcagtgatgcgtatctcccgtc-cta---------
i macNem1.NW_012011533v1    I 29 C 0
s cerAty1.NW_011999477v1      9744974 189 +  10730278 ttctcccaaagttct-gggattacagg-tatgaacaacc-atgcctggccttaaat-tatttggataactatatttcagtataa--tcaatttccttggtacttctgtg----tattttattttatttattta-tt-ttttgtg-gcagggtctcactctgtc---acccaggct--ggagtgcagtgatggg-atctcggctcacta---------
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4593041 189 +  58131712 ttctcccaaagttct-gggattacagg-tatgaacaacc-atgcctggccttaaat-tatttggataactatatttcagtataa--tcaatttcattggtacttctgtg----tattttatttaatatattta-tt-ttttgtg-gctgggtctcactctgtc---acccaggct--ggagtgcagtgatgcg-atctcggctcacta---------
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012114844v1      3992028 189 +   5013933 ttctcccaaagttct-gagattacaga-tatgaacaacc-atgcctggccttaaat-tatttagataactatatttcagtataa--tcaatttccttggtacttctgtg----tattttattttatttattta-tt-ttttgtg-gcagggtctcactctgtc---acccaggct--ggagtacagtgatgcg-atcttggctcacta---------
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              45484 198 -    125141 ttcttccaaagttct-gggattacagg-taggaatgacc-atgtctggccttaaat-tattttgataactgtatttcaatataa--tcgatttccttggtactgctctg----tatttaattgaattaattta-tt-tattgtg-gcaggatcttactctgtc---acccaggct--ggagtactgtgatgcc-atctcggctctcttggctcactg
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        59198 198 +  11725426 ttcttccaaagttct-gggattatagg-tatgaatgacc-gtgcctggccttaaat-tattttgataactgcatttcaatataa--tagatttctttgatactgctctg----tatttaatttaatttattta-tt-tattgtg-gcaggatcttactctgtc---acccaggct--ggagcgctatgatgcc-atctcggctttcttggctcactg
i cebCap1.NW_016107334v1    C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e canFam3.chr3               58187451 350 +  91889043 I
e otoGar3.GL873530            5758253   2 -  36342412 I
e manLeu1.NW_012102632v1      3859307 5915 +   4030761 I

a score=1624251.000000
s hg38.chr15_KI270850v1_alt      6178 221 +    430880 caacctccacctcccaggttcaagcgattctcctgc-ctcggtctc-ctgagt-agctgggattacaggcatgtgcca-ccacgcctggcta-atttttgtgttt-ttagtaga-gacagggtttcaccatg-ttggccaagctggtctcaaactcctgacctcaagtgatttgcctgcctcggcct--cccaaagtgctaagattacaggcgtgagccaccgggcccaac
s panTro5.chr15              63453845 221 +  83230942 caacctccacctcccaggttcaagcgattctcctgc-ctcggtctc-ctgagt-agctgggattacaggcgtgtgcca-ccacgcctggcta-atttttgtgttt-ttagtaga-gacggggtttcaccatg-ttggccaagctggtctcaaactcctgacctcaagtgattcgcctgcctcggcct--cccaaagtgctaagattacaggcgtgagccactgtgtccaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23028918 221 -  99763055 caacctccacctcccaggttcaagtgattctcctgc-ctcagtctc-ctgagt-agctgggattacaggcaggcacca-ccaagcctggcta-atttttgcatgt-ttagtaga-gatggggtttcactatg-ttggccaggctggtatcaaactcctgagctcaagtgatttgcctgcctcggcct--cccaaagtgctaggattacaggcatgagccaccgtgcccaac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2522056 221 +   2806052 caacctccacctcccaggttcaagcgattctcctgc-ctcggtctc-ctgagt-agctgggattacaggcgtgtgcca-ccacgcctggcta-atttttgtgttt-ttagtaga-gacggggtttcaccatg-ttggccaagctggtctcaaactcctgacctcaagtgagtcgcctgcctcggcct--cccaaagtgctaagattacaggcgtgagccaccgtgcccaac
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22689359 220 - 121039945 caacctccacctcctgggttcaagcgattctcctgc-ctcagtctc-ctgagt-agctgggattacaggcatgcgcca-ccaagcctggcta-atttttgcatgt-ttagtaga-ggtggggtttcactatg-ttggccaggctggtctcaaactcctgagctcaagtgattcg-ctgcctcggcct--cccaaagtgctagtattacaggcgtgagccactgtgcccaac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113285288 221 - 169600520 caactttcacctcccaggttcgagcaattctcctgt-ctcagtctc-ctgagt-agctgggattacaggcatgcgcca-ccaagcctggcta-atttttgcattt-ttagtaga-gacggggtttcactatg-ttggccaggctggtctcaaactcctgacctcaagtgattcgcctgcctcggcct--cccaaagtactaggattacaggcgtgagccactgtgcccaac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114630342 221 - 171882078 caaccttcacctcccaggttcaagcaattctcctgt-ctcagtctc-ctgagt-agctgggattacaggcatgcgcca-ccaagcctggcta-atttttgcattt-ttagtaga-gacggggtttcactatg-ttggccaggctggtctcaaactcctgacctcaagtgattcgcctgcctcggcct--cccaaagtactaggattacaggcgtgagccactgtgcccaac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3877701 228 +   4820037 caaccttcacct--caggtttcagcaatt-tcctgtgctcagtctctctgagtgagctgggattacaggcatgccccacccaagcctggctagatttttgcatttgttagtagaggacggggtttcactatgtttggccagtgtggtctcaagactccgacctcaagtgattcgcctgcctcggctcagccaaaagcacctggattataggcgtgagccactgtgcccaac
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9745163 221 +  10730278 caaccttcacctcccaggttcaagcaattctcctgt-ctcagtctc-ctgagt-agctgggattacaggcatgcgcca-ccaagcctggcta-atttttgcattt-ttagtaga-gacggggtttcactatg-ttggccaggctggtctcaaactcctgacctcaagtgattcgcctgcctcggcct--cccaaagtactaggattacaggcatgagccactgtgcccaac
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4593230 221 +  58131712 caaccttcacttcccaggttcaagcaattctcctgt-ctcagtctc-ctgagt-agctgggattacaggcatgcgcca-ccaagcctggcta-atttttgcattt-ttagtaga-gacggtgtttcactatg-ttggccaggctggtctcaaactcctgacctcaagtgattcgcctgcctcggcct--cccaaagtactaggattacaggtgtgagccactgtgcccaac
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3865222 221 +   4030761 caaccttcacctcccaggttcaagcaattctcctgt-ctcagtctc-ctgagt-agctgggattacaggcatgcgcca-ccaagcctggcta-atttttgcattt-ttagtaga-gacggggtttcactatg-ttggccaggctggtctcaaactcctgacctcaagtgattcgcctgcctcggcct--cccaaagtactaggattacaggcgtgagccactgtgcccaac
i manLeu1.NW_012102632v1    I 5915 C 0
s colAng1.NW_012114844v1      3992217 221 +   5013933 caaccttcacctcccaggttcaagcaattctcctgc-ctcagtctc-ctgagt-agctgggattacaggcatgcgcca-ccaagcctggcta-atttttgcattt-ttagtaga-gacggggtttcactatg-ttggccaggctggtctcaaactcctgacctcaagtgattcgcctgcctcggcct--cccaaagtgctaggattacaggcatgagccactgtgcccaac
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              45682 221 -    125141 caacctccacttcttgggttcaagtgattctcctgc-ctcagcctc-ctgagt-agctgggattacaggcatatgcca-ccacgcctggcta-atttttgtattt-ttggtaga-gatggggtttcactgtg-ttggccagggtggtctcaaactcctgacctcaagtgattcgcctgcctcaacct--cctaaagtgctaggattacaggcatgagtcaccgagccctgc
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        59396 221 +  11725426 caacctccacttctcgggttcaagtgattctcctgc-ctcagcctc-ctgagt-agttgggattacaggcatacgcta-ccacgcctggcta-atttttgtattt-ttggtaga-gatggggtttcaccgtg-ttggccagggtggtctcaaactcctgacctcaagtgattcgcctgcctcgacct--ccgaaagtgctgggattacaggcatgggtcaccgagccctgc
i cebCap1.NW_016107334v1    C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e canFam3.chr3               58187451 350 +  91889043 I
e otoGar3.GL873530            5758253   2 -  36342412 I

a score=16640.000000
s hg38.chr15_KI270850v1_alt      6399 2 +    430880 ca
s panTro5.chr15              63454066 2 +  83230942 ca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23029139 2 -  99763055 ca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2522277 2 +   2806052 ca
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22689579 2 - 121039945 ca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113285509 2 - 169600520 ca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114630563 2 - 171882078 ca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3877929 2 +   4820037 ca
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9745384 2 +  10730278 ca
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4593451 2 +  58131712 ca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3865443 2 +   4030761 cA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3992438 2 +   5013933 ca
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              45903 2 -    125141 ta
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        59617 2 +  11725426 ta
i cebCap1.NW_016107334v1    C 0 C 0
s canFam3.chr3               58187801 2 +  91889043 ca
i canFam3.chr3              I 350 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             812851 1043 +   1727078 I
e otoGar3.GL873530            5758253 2 -  36342412 I

a score=81949.000000
s hg38.chr15_KI270850v1_alt      6401 10 +    430880 ctcctatgta
s panTro5.chr15              63454068 10 +  83230942 ctcctatgta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23029141 10 -  99763055 ctcctgtgta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2522279 10 +   2806052 ctcttacata
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22689581 10 - 121039945 ctcctgtgta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113285511 10 - 169600520 ctcctgtgta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114630565 10 - 171882078 ctcctgtgta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3877931 10 +   4820037 ctcctgtgta
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9745386 10 +  10730278 cccctgtgta
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4593453 10 +  58131712 ctcctgtgta
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3865445 10 +   4030761 Ctcctgtgta
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3992440 10 +   5013933 ctcctgtgta
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              45905 10 -    125141 ctcccgtatg
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        59619 10 +  11725426 ctcctatgcg
i cebCap1.NW_016107334v1    C 0 C 0
s canFam3.chr3               58187803 10 +  91889043 ctcgtttgca
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             813894 10 +   1727078 ctcccatgta
i dasNov3.JH579681          I 1043 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90167712 960 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e otoGar3.GL873530            5758253  2 -  36342412 I

a score=939321.000000
s hg38.chr15_KI270850v1_alt      6411 108 +    430880 ttttattttctgcatttcaaaatattgttct---gagaa-ggagtTTGTGG----CAAAAAAGGA----------TAAGAAT-----CCAGG------------CCTTATTGGGAAATCCTAGAGGACAGAGCAACAGAGAGG--
s panTro5.chr15              63454078 108 +  83230942 ttttattttatgcatttcaaaatattgttct---gagaa-ggagtTTGTGG----CAAAAAAGGA----------TAAGAAC-----CCAGG------------CCTTATTGGGAAATCCAAGAGGACAGAGCAACAGAGAGG--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23029151 111 -  99763055 ttttattttatgcatttcaaaacattgttctgaggagaa-ggggtttgtgg----caaaaaagga----------taagaat-----ccAGG------------CCTTACTAGGAAATCCAGGAGGACAGAGCAACAGAGAGG--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2522289 108 +   2806052 ttttattttatgcatttcaaaatattgttct---gagaa-ggagtTTGTGG----CAAAAAAGGA----------TAAGAAT-----CCAGG------------CCTTATTGGGAAATCCAAGAGGACAGAGCAACAGAGAGG--
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22689591 111 - 121039945 ttttattttacgcatttcaaaacattgttctgaggagaa-gGAGTTTGTGG----CAAAAAAGAG----------TAAGAAT-----CCAGG------------CCTTACTAGGAAATCCAGGAGGACAGAGCAACAGAGAGG--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113285521 111 - 169600520 ttttatttactgcatttcaaaacattgttctgaggagaa-gGAGTTTGTGG----CAAAAAGGGA----------TAAGAAT-----CCAGG------------CCTTACTGGGAAATCCAAGAGGACAGAGCAACAGAGAGG--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114630575 111 - 171882078 ttttatttactgcatttcaaaacattgttctgaggagaa-gGAGTTTGTGG----CAAAAAGGGA----------TAAGAAT-----CCAGG------------CCTTACTGGGAAATCCAAGAGGACAGAGCAACAGAGAGG--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3877941 111 +   4820037 ttttatttactgcatttcaaaacattgttctgaggagaa-gGAGTTTGTGG----CAAAAAGGGA----------TAAGAAT-----CCAGG------------CCTTACTGGGAAATCCAAGAGGACAGAGCAACAGAGAGG--
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9745396 111 +  10730278 ttttatttactgcatttcaaaacattgttctgaggagaa-gGAGTTTGTGG----CAAAAAGGGA----------TAAGAAT-----CCAGG------------CCTTACTGGGAAATCCAAGAGGACAGAGCAACAGAGAGG--
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4593463 111 +  58131712 ttttatttactgcatttcaaaacattgttctgaggagaa-gGAGTTTGTGG----CAAAAAGGGA----------TAAGAAT-----CCAGG------------CCTTACTGGGAAATCCAAGAGGACAGAGCAACAGAGAGG--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3865455 111 +   4030761 ttttatttactgcatttcaaaacattgttctgaggagaa-gGAGTTTGTGG----CAAAAAGGGA----------TAAGAAT-----CCAGG------------CCTTACTGGGAAATCCAAGAGGACAGAGCAACAGAGAGG--
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3992450 111 +   5013933 ttttatttaatgcattgcaaaacattgttctgaggagaa-gGAGTTTGTGG----CAAAAAGGGA----------TAAGAAT-----CCAGG------------CCTTACTGGGAAATCCAAGAGGACAGAGCAACAGAGAGG--
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              45915 108 -    125141 ttttattttatgtgttttgaaacattgttct---gagaa-ggaatTTGTGG----CAAAAAAGGA----------TAAGAAT-----CGAGG------------CCTTACTGGGAAATCCGAGACGACAGAGCCACAGAGAGA--
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        59629 108 +  11725426 ttttattttatgcgtttcgaaacattgttct---gagaa-tgagtTTGTGA----CAAAAAAGGA----------TAAGAAT-----CCAGG------------CCTTACTGGGAAATCCAGGAGGATAGAGCAACAGAGAGG--
i cebCap1.NW_016107334v1    C 0 M 1543
s mm10.chr9                  90168672 122 + 124595110 ttgtatcttaggcatgtacaaatggttttct---aaaaa-gcaatgcatggAAAACAAACAAAGA----------GACAAATAAACACCATGAAGAATGTTTTTCCTTCCTGGAAAATCTA-------AGAGTGATGGAGAGA--
i mm10.chr9                 I 960 I 2
s canFam3.chr3               58187813  93 +  91889043 ttttatcttatgcattcgagaatgtcattct---gagaa-gggctccTCAA----CGAAAGAGGT----------TAGTTAA-------GAG------------TCTTGC-------TCTGAGAAGAC------TCTGAGAGG--
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             813904 119 +   1727078 ttttattttatgcatttaaaaactttattct---gagaagggggttcatgg----TAAAAAAAAAAAGGAAAAGTTAAGAAT-----CCCAG------------CCTTACTGGGAAATCCAAGAGGAC--AGCAATAGGGAAAGT
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e calJac3.chr10             113717393 2792 - 132174527 I
e otoGar3.GL873530            5758253   2 -  36342412 I

a score=773101.000000
s hg38.chr15_KI270850v1_alt      6519 94 +    430880 GG-TTTTTA-AACTGCAAGGGCCTGAGCAGAGGTCTGCCAATTTTTTCCATCCC-TGGAA-CCTT-TCTTTAAATGAATTCTTCCATGTAAAAGAAAGA
s panTro5.chr15              63454186 94 +  83230942 GG-TTTTTA-AACTGCAAGGCCCTGAGCAGAGGTCTGCCAATTTTTTCCATCCC-TGGAA-CCTT-TCTTTAAATGAATTCTTCCATGTAAAAGAAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23029262 94 -  99763055 GG-TTTTTA-AACTGCAAGGGCCTGAGCAGAGGTCTGCCAATTTTTTCCATCCC-TGGAA-CCTT-TCTTTAAATGAATTCTTGCATGTAAAAGAAAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2522397 95 +   2806052 GGTTTTTTA-AACTGCAAGGGCCTGAGCAGAGGTCTGCCAATTTTTTCCATCCC-TGGAA-CCTT-TCTTTAAATGAATTCTTCCATGTAAAAGAAAGA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22689702 94 - 121039945 GG-TTTTTA-CACTGCAAGGGCCTGAGCAGAGGTCTGCCAATTTTTTCCATCCC-TGGAA-CCTT-TCTTTAAATGAATTCTTCTATGTGAAAGAAAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113285632 94 - 169600520 GG-TTTTTA-AACGGCAAGGGCCTGAGCAGAGGTCTGCCAATTTTTTCCATCCC-TGGAA-GCTT-TCTTTAAATGAATTCTTGTATATAAAAGAAAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114630686 94 - 171882078 GG-TTTTTA-AACGGCAAGGGCCTGAGCAGAGGTCTGCCAATTTTTTCCATCCC-TGGAA-GCTT-TCTTTAAATGAATTCTTGTATATAAAAGAAAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3878052 94 +   4820037 GG-TTTTTA-AACGGCAAGGGCCTGAGCAGAGGTCTGCCAATTTTTTCCATCCC-TGGAA-GCTT-TCTTTAAATGAATTCTTGTATATAAAAGAAAGA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9745507 94 +  10730278 GG-TTTTTA-AACGGCAAGGGCCTGAGCAGAGGTCTGCCAATTTTTTCCATCCC-TGGAA-Gctt-tctttaaatgaattcttgtatataaaagaaaga
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4593574 94 +  58131712 GG-TTTTTA-AACGGCAAGGGCCTGAGCAGAGGTCTGCCAATTTTTTCCATCCC-TGGAA-GCTT-TCTTTAAATGAATTCTTGTATATAAAAGAAAGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3865566 94 +   4030761 GG-TTTTTA-AACGGCAAGGGCCTGAGCAGAGGTCTGCCAATTTTTTCCATCCC-TGGAA-GCTT-TCTTTAAATGAATTCTTGTATATAAAAGAAAGA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3992561 94 +   5013933 GA-TTTTTA-AACTGCAAGGGCCTGAGCAGAGGTCTGCCAATTTTTTTCATCCC-TGGAA-GCTT-TCTTTAAATGAATTCTTGTATGTAAAAGAAAGA
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              46023 94 -    125141 GG-TTTTTA-AACTGCAAGGACCTGAGCAGAGGTCTGCCAGATTTTTCCATCCC-TGGAA-CCTT-TCTTGAAATGTATTCTTGTATGTAAAAGGGAGA
i saiBol1.JH378378          C 0 C 0
s mm10.chr9                  90168796 90 + 124595110 GA-TTTCCA-ACCCCTCAGGGCTTAAGCTGAGGTCTTCAGGCTTTCTCTGGCTCATAAGC-TCTT-GCTTCACAGGGACTCTT-----TCAAAGAAAGA
i mm10.chr9                 I 2 C 0
s canFam3.chr3               58187906 96 +  91889043 GA-TTCTAACAGCCTCCAGGGCCTGAGCACAGGGCTGCAGGTTTTGTCCAGGCC-TAGAA-CCTTCTCTTCAAATGGACCCTTGCATGTAACACAAATA
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             814023 94 +   1727078 GT-TTTGCA-ACCTGCAAGGGCCTGAGCAAAggtctacaaattctttccagcct-tggaaccctt-tcttcaaatgaactcttgcatgt-aaagaacta
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e calJac3.chr10             113717393 2792 - 132174527 I
e cebCap1.NW_016107334v1        59737 1543 +  11725426 M
e otoGar3.GL873530            5758253  2 -  36342412 I

a score=1074972.000000
s hg38.chr15_KI270850v1_alt      6613 131 +    430880 AACCAGAGCCACTCTGTTGAAGT--GGCAGT--T---AGGGGCCAGGCAGCCCCACTGGGGTGGTCTTTCTCTGTCTCCCCATTCCAGGAGGCCTGGAGACACTTGCAGAATGCTCAC----GCACCTGAGAGCACATTTTT-
s panTro5.chr15              63454280 131 +  83230942 AACCAGAGCCACTCTGTTGAAGT--GGCAGT--T---AGGGGCCAGGCAGCCCCACTGGGGTGGTCTTTCTCTGTCTCCCCATTCCAGGAGGCCTGGAGACACTTGCAGAATGCTCAC----ACACCTGAGAGCACATTTTT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23029356 131 -  99763055 AACCAGAGCTACCCTGTTGAAGT--GGTGGT--T---AGGGGCCAGGGAGCCCCAGTGGAGTGGTCTTTCTCTGTCTCCCCAATCCAGGAGGCCTGGAGACACTTGCAGAATGCTCAC----GCACCTGAGAGCACATTTTT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2522492 131 +   2806052 AACCAGAGCCACTCTGTTGAAGT--GGCAGT--T---AGGGGCCAGGCAGCCCCACTGGGGTGGTCTTTCTGTGTCTCCCCATTCCAGGAGGCCTGGAGACACTTGCAGAATGCTCAC----GCACCTGAGAGCACATTTTT-
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22689796 130 - 121039945 AACCAGAGCTACCCTGTTGAAGT--GGCGGT--T---AGGGGCCAGGGAGCCCCAATGGGGTGGTCTTTCTCTGTCTCCCCAATCCAGGAGGCCTGGAGACACTTGCAGAATGCTCAC-----CACCTGAGAGCACATTTTT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113285726 129 - 169600520 AACCAGAGCTACTCTGT--AAGT--GGCAGT--T---AGGGGCCAGGGAGCCCCACTGGGGTGGTCTTTCTCTGTCTCCCCATTCCAGGAGGCCTGGAGACATTTGCAGAATGCTCAC----GCACCTGAGAGCACATTTTT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114630780 129 - 171882078 AACCAGAGCTACTCTGT--AAGT--GGCAGT--T---AGGGGCCAGGGAGCCCCACTGGGGTGGTCTTTCTCTGTCTCCCCATTCCAGGAGGCCTGGAGACATTTGCAGAATGCTCAC----GCACCTGAGAGCACATTTTT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3878146 129 +   4820037 AACCAGAGCTACTCTGT--AAGT--GGCACT--T---AGGGGCCAGGGAGCCCCACTGGGGTGGTCTTTCTCTGTCTCCCCATTCCAGGAGGCCTGGAGACATTTGCAGAATGCTCAC----GCACCTGAGAGCACATTTTT-
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9745601 129 +  10730278 aaccagagctactctgt--aagt--ggcagt--t---aggggccagggagccccacTGGGGTGGTGTTTCTCTGTCTCCCCATTCCAGGAGGCCTGGAGACATTTGCAGAATGCTCAC----GCACCTGAGAGCACATTTTT-
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4593668 131 +  58131712 AACCAGAGCTACTCTGTTGAAGT--GGCAGT--T---AGGGGCCAGGGAGCCCCACTGGGGTGGTCTTTGTCTGTCTCCCCATTCCAGGAGGCCTGGAGACATTTGCAGAATGTTCAC----GCACCTGAGAGCACATTTTT-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3865660 129 +   4030761 AACCAGAGCTACTCTGT--AAGT--GGCAGT--T---AGGGGCCAGGGAGCCCCACTGGGGTGGTGTTTCTCTGTCTCCCCATTCCAGGAGGCCTGGAGACATTTGCAGAATGCTCAC----GCACCTGAGAGCACATTTTT-
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3992655 125 +   5013933 AACCAGAGCTACTCTGTTGAAGT--GGCAGT--T---AGGGACCAGGGAGCCCCACTGGGGTGGTCTTTCTCTGTCTCCCCATTCCAGGAGGCCTGGAGACATTTGCATAAT----------GCAAATGAGAGCACATTTTT-
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              46117 131 -    125141 AACCAGAGCAACTCTCTTGAAAT--GGCAGT--T---AGGGGCCAGGGAGACCCACTGGTCTGGTCTTTCTCTGTCTCCCCATTCCAAGAGGCCTGGAGAAATTTGCAGAACGTTCAT----GCACCTGGGAGCACtttttt-
i saiBol1.JH378378          C 0 I 1189
s otoGar3.GL873530            5758255 128 -  36342412 AGCCAGAGCTACTCCACTGAAGT--GATGGTAGT---AGGGGCCAGGGAGCCCCACCTGGGTGGTCTTTCTCCATCTCTCCATCCCAGGAAGCCTGGAAACA----CAGAAC-TGCAG----GCACCTTAGGACACACGGTT-
i otoGar3.GL873530          I 2 C 0
s mm10.chr9                  90168886 123 + 124595110 AGTCAAAGGTGCTCCACTGAGACAGGGTAGA--G---AGACACCAGAGGGCCCCATCTAGATGGTTCT------CCTCCCTAACCCAGGAGGGCAATGGATATGTGCATATCCCACAG----GCATCTGCGGACACAC-----
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58188002 106 +  91889043 ACCCAGAGTTGCTCAGCTGGAGT--GGGGGC--C----------------TCACATCTGGATGGTCCTTCTCAATCTCCCAGGGGCAGGACACCTAC----------------CCCACCGTGGACCCTGAGAGCACATTTAA-
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             814117 134 +   1727078 aatcagagctgctctgttgaagt--ggtagt--ggtaagcgggcagggagcctcacctgggcggtccttttctgtctccccatcccaggaggcctggagatatgtgcagaacccTCAC----ATACCTGA-AGCATATTTTTT
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e calJac3.chr10             113717393 2792 - 132174527 I
e cebCap1.NW_016107334v1        59737 1543 +  11725426 M

a score=1513750.000000
s hg38.chr15_KI270850v1_alt      6744 218 +    430880 AAATCCATCAGGCTa-ataat-aatcataacaatcataattgccatcatattcaaccagtggttcaggcactgctaaatgtggagtagct--cacctgg---tttaatcctcacagcagcatcaagagtgta-agtgctgtggttatccacattctacagaGT----------CATTCAACAAATA----CCAAAAAAGG---------ACTAAGTTCTGGACAC----------------TTCCTCTGACACTTA-AATCT-TCAA
s panTro5.chr15              63454411 218 +  83230942 AAATCCATCAGGCTa-ataat-aatcataacaatcataattgccatcatattcaaccagtggctcaggcactgctaaatgtggagtagct--cacctgg---tttaatcctcacaacagcatcaagactgta-agtgctgtggttatccacattctacagaGT----------CATTCAACAAATA----CCAAAAAAGG---------ACTAAGTTCTGGACAC----------------TTCCTCTGACACTTA-AATCT-TCAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23029487 217 -  99763055 AAATCCATCAGGCTa-ataat-aatcataacaatcataattgccatcatattcaaccagtggctcaggcactgctaaa--gggactagctc-caccagg---tttaatcctcacgacagcatcgagattgta-agtgctgtggttatctgcattctacagaGT----------CATTCAACAAATA----CCAAAAAAGG---------ACTAAGTTCTGGACAC----------------TTCCTCTAACACTTA-AATCT-TCAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2522623 218 +   2806052 AAATCCATCAGGCTa-ataat-aatcataacaatcataattgccatcatattcaaccagtggctcaggcactgctaaatgtggagtagct--cacctgg---tttaatcctcacaacagcatcaagagtgta-agtgctgtggttatccacattctacagaGT----------CATTCAACAAATA----CCAAAAAAGG---------ACTAAGTTCTGGGCAC----------------TTCCTCTGACACTTA-AATCT-TCAA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22689926 216 - 121039945 AAATCCATCAAGCTa-ataat-agtcataacaatcataattgccatcatattcaaccagtggctcagacactgctaaa--gggagtagct--caccagg---tttaatcctcaccacagcatcgagagtgta-agtgctgtggttatccgcattctacagaGT----------CATTCAACAAATA----CCAAAAAAGG---------ACTAAGTTCTGGACAC----------------TTCCTCTGACACTTA-AATCT-TCAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113285855 228 - 169600520 CAATCCATCAGGCTa-ataat-aatcataacaatcataattgccatcatattccaccagtggctcaggcactgctaaatgtggagtagct--caccagg---tttaatcctcacaacagcatcgagagtgta-agtgctgtggttatctgcattctacagagtagaaTTTTGGTATTCAACAAATA----CCAAAAAAGG---------ACTAAGTTCTGGACAC----------------TTCCTCTGACACTTA-AATCT-TCAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114630909 228 - 171882078 CAATCCATCAGGCTa-ataat-aatcataacaatcataattgccatcatattccaccagtggctcaggcactgctaaatgtggagtagct--caccagg---tttaatcctcacaacagcatcgagagtgta-agtgctgtggttatctgcattctacagagtagaaTTTTGGTATTCAACAAATA----CCAAAAAAGG---------ACTAAGTTCTGGACAC----------------TTCCTCTGACACTTA-AATCT-TCAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3878275 228 +   4820037 CAATCCATCAGGCTa-ataat-aatcataacaatcataattgccatcatattccaccagtggctcaggcactgctaaatgtggagtagct--caccagg---tttaatcctcacaacagcatcgagagtgta-agtgctgtggttatctgcattctacagagtagaaTTTTGGTATTCAACAAATA----CCAAAAATGG---------ACTAAGTTCTGGACAC----------------TTCCTCTGACACTTA-AATCT-TCAA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9745730 228 +  10730278 CAATCCATCAGGCTa-ataat-aatcataacaatcataattgccatcatattccaccagtggctcaggcactgctaaatgtggagtagct--caccagg---tttaatcctcacaacagcatcgagagtgta-agtgctgtggttatctgcattctacagagtagaattttgatattcaACAAATA----CCAAAAAAGG---------ACTAAGTTCTGGACAC----------------TTCCTCTGACACTTA-AATCT-TCAA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4593799 228 +  58131712 CAATCCATCAGGCTa-ataat-aatcatagcaatcataattgccatcatattccaccagtggctcaggcactgctaaatgtggagtagct--caccggg---tttaatcttcacaacagcatcgagagtgta-agtgctatggttatctgcattctacagagtagaaTTTTGGTATTCAACAAATA----CCAAAAAAGG---------ACTAAGTTCTGGACAC----------------TTCCTCTGACACTTA-AATCT-TCAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3865789 228 +   4030761 CAATCCATCAGGCTa-ataat-aatcataacaatcataattgccatcatattccaccagtggctcaggcactgctaaatgtggagtagct--caccagg---tttaatcctcacaacagcatcgagagtgta-agtgctgtggttatctgcattctacagagtagaaTTTTGGTATTCAACAAATA----CCAAAAAAGG---------ACTAAGTTCTGGACAC----------------TTCCTCTGACACTTA-AATCT-TCAA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3992780 227 +   5013933 CAATCCATCAGGCTA-ATAAT-AATAATAACaatcataactgccatcatattcaacc-gtggctcaggcactgctaaatgtggagtagct--caccagg---cttaatcctcacaacagcatcgagagtgta-agtgctgtggttatctgcattctacagaGTAGAATTTTGGTATTCAACAAATA----CCAAAAAAGG---------ACTAAGTTCTGGACAC----------------TTCCTCTGACACTTA-AATCT-TCAA
i colAng1.NW_012114844v1    C 0 C 0
s otoGar3.GL873530            5758383 216 -  36342412 AAGTGCACCAGGCTA-ATGAT-AACCCTGACAAT------TGCAAACATGTTCAGTCAGCAGG--AGGCCCTGCTGTATGTGGAGCAGCTAgtgctagttcctttaatcctccccacaacctcaattgtgcagaattctcagattatgcccattctacaggtT----------CACTCAGCAAAGG----CTGAGAAATG---------CCTACATTCCAGACAC----------------CACTTCTGGCACTTA-AGTCT-TCAA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90169009 205 + 124595110 ---CCCACCAGGCTA-GTAAC-AATCCCAATAAT----------GTCTGCTGAGTCTAGTGGGCCAGGCGCTGCTGTGTGTCT-GTGGCT--TAGTGTG---ATCAGCCCTCAGAAGAGCCCCTGAAATGTA-CGTTCTGCTGTTATTC-CATTCTACAcatt----------cattcaacaaacatttcctgaaagaca---------actgtgttctaaacg-------------------cctctagcactta-aatccgtcaa
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58188108 208 +  91889043 AAATCCACCAGGCTATACAGTCCACCCTAATAATCATAATGGCCCACACGCGCGGTCAGCAAGCCGTGCACTGCCGTGGGTGGATGGGCT--C---------TTT--------------CACTAAGAGCACA-AG-----CAATTATCCCCATTCTACAGATC-------TGATATT-------TC----TCGAGAAACT---------GCCAAGTCTTAACTACCTAGAGCGCTAaggcactgttctgacaggtagagtct-tcaa
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             814251 226 +   1727078 AAACCTACCAGGCTA-ATGGT-AGCCataataatcataatatccatcatgttcaaccagtgggcaaggcactactaaatggggattagct--cagttta---tttaatcct-ataacagccctcaggatgta-cattctgttattgtccttattctacagatt----------catttaacaaata----ttcatcgatatttgttactactagttgccaggcac-----------------tcttctaatgtttaaaatca-tcaa
i dasNov3.JH579681          C 0 I 3
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e calJac3.chr10             113717393 2792 - 132174527 I
e cebCap1.NW_016107334v1        59737 1543 +  11725426 M
e saiBol1.JH378378              46248 1189 -    125141 I

a score=18221.000000
s hg38.chr15_KI270850v1_alt      6962 2 +    430880 CA
s panTro5.chr15              63454629 2 +  83230942 CA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23029704 2 -  99763055 CA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2522841 2 +   2806052 CA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22690142 2 - 121039945 CA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113286083 2 - 169600520 CA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114631137 2 - 171882078 CA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3878503 2 +   4820037 CA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9745958 2 +  10730278 TA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4594027 2 +  58131712 CA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3866017 2 +   4030761 CA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3993007 2 +   5013933 CA
i colAng1.NW_012114844v1    C 0 C 0
s otoGar3.GL873530            5758599 2 -  36342412 CA
i otoGar3.GL873530          C 0 I 5
s mm10.chr9                  90169214 2 + 124595110 ca
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58188316 2 +  91889043 ca
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             814477 3 +   1727078 I
e cebCap1.NW_016107334v1        59737 1543 +  11725426 M
e saiBol1.JH378378              46248 1189 -    125141 I

a score=39562.000000
s hg38.chr15_KI270850v1_alt      6964 4 +    430880 AAGA
s panTro5.chr15              63454631 4 +  83230942 AAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23029706 4 -  99763055 AAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2522843 4 +   2806052 AAGA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22690144 4 - 121039945 AAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113286085 4 - 169600520 AAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114631139 4 - 171882078 AAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3878505 4 +   4820037 AAGA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9745960 4 +  10730278 AAGA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4594029 4 +  58131712 AAGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3866019 4 +   4030761 AAGA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3993009 4 +   5013933 AAGA
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              47437 4 -    125141 aaaa
i saiBol1.JH378378          I 1189 C 0
s otoGar3.GL873530            5758606 4 -  36342412 AAGA
i otoGar3.GL873530          I 5 C 0
s mm10.chr9                  90169216 4 + 124595110 aaca
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58188318 4 +  91889043 aaga
i canFam3.chr3              C 0 I 594
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             814477 3 +   1727078 I
e cebCap1.NW_016107334v1        59737 1543 +  11725426 M

a score=53816.000000
s hg38.chr15_KI270850v1_alt      6968 8 +    430880 ATATAAA-G
s panTro5.chr15              63454635 8 +  83230942 ATATAAA-G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23029710 8 -  99763055 ATATAAA-G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2522847 8 +   2806052 ATATAAA-G
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22690148 8 - 121039945 ATATAAA-G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113286089 8 - 169600520 ATATAAA-G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114631143 8 - 171882078 ATATAAA-G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3878509 8 +   4820037 ATATAAA-G
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9745964 8 +  10730278 ATATAAA-G
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4594033 8 +  58131712 ATATAAA-G
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3866023 8 +   4030761 ATATAAA-G
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3993013 8 +   5013933 ATATAAA-G
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              47441 9 -    125141 ataaaaatT
i saiBol1.JH378378          C 0 C 0
s otoGar3.GL873530            5758610 8 -  36342412 TTAAAGA-T
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90169220 8 + 124595110 atatgaa-g
i mm10.chr9                 C 0 I 1388
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             814477 3 +   1727078 I
e canFam3.chr3               58188322 594 +  91889043 I
e cebCap1.NW_016107334v1        59737 1543 +  11725426 M

a score=2729252.000000
s hg38.chr15_KI270850v1_alt      6976 454 +    430880 ggccaagtgtcgtggctcacacatgtaatcccagcactttaggaggctgaggtgggaggattgcttgaggccaggagttcaaga-------------------------------ccagcctgggcaacatagcaagactcccatctccaca----ca----------------cacacaaaaaAATTATCCAGgaccagc----tgcagtggctcacacctgtaatcccagcactttgggaggccgaggtagaaggatcacttgagcccaggagtttgtttgagaccagcctgggcaacatagtgagaccccatctctattttaaaaaaactaaaaataaaaacatattagccaagtgtggtggcacccacctgtagtcccagtccctccctacttgggaggctgagatgggaggatggcttgagctcaggagttggaggctgcagagacctatgattgcacacctgcactcctgtctgggcgacagaccaagaccc---tgtttc-----caaaa
s panTro5.chr15              63454643 447 +  83230942 ggccaagtgtggtggctcacacctgtaatcccagcactttaggaagctgaggtgggaggattgcttgaggccaggagttcaaga-------------------------------ccagcctgggcaacatagcaagactcccatctccaca---------------------------aaaaaAATTATCCAGgaccagc----tgcagtggctcacacctgtaatcccagcactttgggaggccgaggtagaagggtcacttgagcccaggagtttgtttgagaccagcctgggcaacatagtgagaccccatctctattttaaaaaaactaaaaataaaaacatattagccaagtgtggtggcacccacctgtagtcccagtccctccctacttgggaggctgagatgggaggatggctcgagctcaggagttggaggctgcagagacctatgattgcacacctgcactcctgtctgggcgacagaccaagaccc---cgtttc-----caaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23029718 451 -  99763055 ggccaagtgtggtggctcacacctgtaatcccaacaatttaggaggctgaggtgggaggatcgcttgagacctgcagttcgaga-------------------------------ccagcctgggcaacacagcaaaactcccatctctaca----aa---aaaCA------ACAACAACAAAAAATTATCCAGggccagc----ctcggtgcctcacgcctgtaatcccagaactatgggaggctgaggtagaaggatcgcttgagcccaggagtttgtttgagactagcctgggtaacatagtgagatcccatctctatt---aaaaaaattaaaatataaaaaaattagccaagtgtggtggcatccacctgtagtcccag-------ctacttgggaggctgagatgggaggatggctcgagctcaggagttggaggctgcagtgagctatgattgcccacctgcactcctgtctgggcgacagagcaagaacc---catttc-----aaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2522855 461 +   2806052 ggccaagtgtcgtggctcacacctgtaatcccagcactttaggaggctgaggtgggaggattgcttgaggccaggagttcaaga-------------------------------ccagcctgggcaacatagcaagactcccatctccaca----aa---aaaaa------aaaaaaAAAAAAAATTATCCAGgaccagc----tgcagtggctcacacctgtaatcccagcactttgggaggccgaggtagaaggatcacttgagcccaggagtttgtttgagaccagcctgggcgacatagtgagaccccatctctattttaaaaaaactaaaaataaaaacatattagccaagtgtggtggcacccacctgtagtcccagtccctccctacttgggaggctgagatgggaggatggctcgagctcaggagttggaggctgcagagacctatgattgcacacctgcactcctgtctgggcgacagaccaagaccc---cgtttc-----caaaa
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22690156 455 - 121039945 ggccaagtgtggtggctcacacctgtaatcccaacaatttaggaggctgaggtgggaggattgcttgaggccaggggttcgaga-------------------------------ccagcccgggcaacatagcaaaactcccatctctaca----aaaaaaaaaa------aaaaaaaaaaaaaaTTATCCAGggccagc----ctcggtgcctcacacctgtaatcccagcactatgggaggctgaggtagaaggatcacttgagcctcggagtttgtttgagaccagcctgggtaacatagtgagatcccatctctatt--aaaaaaattaaaaataaaaaaaaattagccaagtgtggtggcacccacctgtagtcccag-------ctacttgggaggctgagatgggaggatggctcgagctcaggagttggaggctgcagtgagctatgattgcccacctgcactcctgtctgggtgacagagcaagaccc---catttc-----aaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113286097 467 - 169600520 ggccaagtgtggtggctcacacctgtaatcccaacaatttaggaggctgaggtgggaggatcagttgaggcctggagtttgaga-------------------------------ccagcctgggcaacatagcaaaactcccatctctacc-aaaaa---aaaaa------aaaaaAAAAAAAAATTAATCAGggccagc----cttgatgcctcacacctgtaatcccagcactatgggagactgaggtagaaggattgcttgagcccaggagtttgtctgagaccagcctgggcaacatagtgagatcccatctctatt--aaaaaaattaaaaataaaaaaaaattagccaagtgtggtggcacccacctgtagtcccagtcccttgctacttgggaggctgagatgggaggatggctcaagctcaggagttggaggctgcagtgagctatgattgcacacctgcactcctgtctgggtgacagagcaagaccc---tatttcaaaaaaaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114631151 468 - 171882078 ggccaagtgtggtggctcacacctgtaatcccaacaatttaggaggctgaggtgggaggatcagttgaggcctggagtttgaga-------------------------------ccagcctgggcaacatagcaaaactcccatctctacCaaaaaa---aaaaa------aaaaaaaaaaaaaaTTAATCAGggccagc----cttgatgcctcacacctgtaatcccagcactatgggaggctgaggtagaaggattgcttgagcccaggagtttgtctgagaccagcctgggcaacatagtgagatcccatctctatt--aaaaaaattaaaaataaaaaaaaattagccaagtgtggtggcacccacctgtagtcccagtcccttgctacttgggaggctgagatgggaggatggctcaagctcaggagttggaggctgcagtgagctatgattgcacacctgcactcctgtctgggtgacagagcaagacgc---tattttttaaaaaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3878517 464 +   4820037 ggccaagtgtggtggctcacacctgtaatcccaacaatttaggaggctgaggtgggaggatcagttgaggcctggagtttgaga-------------------------------ccagcctgggcaacatagcaaaactcccatctctacc----aa---aaaaa------aaaaaaaaAAAAAATTAATCAGggccagc----cttgatgcctcacacctgtaatcccagcactatgggaggctgaggtagaaggattgcttgagcccaggagtttgtctgagaccagcctgggcaacatagtgagatcccatctctatt--aaaaaaattaaaaataaaaaaaaattagccaagtgtggtggcacccacctgtagtcccagtcccttgctacttgggaggctgagatgggaggatggctcaagctcaggagttggaggctgcagtgagctatgattgcacacctgcactcctgtctgggtgacagagcaagaccc---tatttcaaaaaaaaaa
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9745972 455 +  10730278 ggccaagtgtggtggctcacacctgtaatcccaacaatttaggaggctgaggtgggaggatcagttgaggcctggagtttgaga-------------------------------ccagcctgggcaacatagcaaaactcccatctctacc--------------------aaaaaaaaaaaaaATTAATCAGggccagc----cttgatgcctcacacctgtaatcccagcactatgggaggctgaggtagaaggattgcttgagcccaggagtttgtctgagaccagcctgggcaacatagtgagatcccatctctatt--aaaaaaattaaaaataaaaaaaaattagccaagtgtggtggcacccacctgtagtcccagtcccttgctacttgggaggctgagatgggaggatggctcaagctcaggaggtggaggctgcagtgagctatgattgcccacctgcactcctgtctgggtgacagagcaagaccc---tatttc--aaaaaaaa
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4594041 459 +  58131712 ggccaagtgtggtggctcacacctgtaatcccaacaatttaggaggctgaggtgggaggatcagttgaggcctggagtttgaga-------------------------------ccagcctgggcaacatagcaaaactcccatctctacc---aaa---aaaaa------aaaaaaaAAAAAAATTAATCAGggccagc----cttgatgcctcacacctgtaatcccagcactatgggaggctgaggtagaaggattgcttgagcccaggagtttgtctgagaccagcctgggcaacatagtgagatcccatctctatt--aaaaaaattaaaaat-aaaaaaaattagccaagtgtggtggcacccacctgtagtcccagtcccttgctacttgggaggctgagatgggaggatggctcaagctcaggagttggaggctgcagtgagctatgattgcacacctgcactcctgtctaggtgacagagcaagaccc---tatttc-----aaaaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3866031 454 +   4030761 ggccaagtgtggtggctcacacctgtaatcccaacaatttaggaggctgaggtgggaggatcagttgaggcctggagtttgaga-------------------------------ccagcctgggcaacgtagcaaaactcccatctctacc----------------------aaaaaaaaaaaaTTAATCAGggccagc----cttgatgcctcacacctgtaatcccagcactatgggaggctgaggtagaaggattgcttgagcccaggagtttgtctgagaccagcctgggcaacatagtgagatcccatctctatt--aaaaaaattaaaaataaaaaaaaattagccaagtgtggtggcacccatctgtggtcccagtcccttgctacttgggaggctgagatgggaggatggctcaagctcaggagttggaggctgcagtgagctatgattgcacacctgcactcctgtctgggtgacagagcaagaccc---tatttc-aaaaaaaaa
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3993021 454 +   5013933 ggccaagtgtggtggctcacacctataatcgcaagaatttaggaggctgaggtgggaggatcacttgaggcctggagtttgaga-------------------------------ccagcctgggcaacatagcaaaactgccatctctacc-------------a------aaaaaaaaaaaaaaTTAATCAGggccagc----cttgatgcctcacacctgtaatcccagcactatgggaggctgaggtagaaggattgcttgagcccaggagtttgtctgagaccagcctgggcaacatagtgagattccatctctatt--aaaaaaattaaaaat-aaaaaaaattagccaagtgtggtggcacccacctgtagtcccagtcccttgctacttgggaggctgagatgggaggatggctcaagctcaggagttggagtctgcagtgagctatgattgcacacttgcactcctgtctgggtgacagagcaagaccc---ggtttc---aaaaaaa
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              47450 474 -    125141 Ggccaagtgtggtggcagccacctgtagtcccagctacttggaaggctgagatgggaggattgcttgagctcaggagttggaggctgcagggagctatgattgcacacctgctctccagtctgggtgacagaacaaga-tcctgtttaaaaa----aa---aaacaaagggcaaagaatataaaGATTCTTGCCTTCCAgctgggtgtagtgactcatgcctgtaatcccagcaatttgcgaggccgaggcaggtgaatca--ggaggtcaggatat----cgagaccactctggctaacaccgtgagaccccatctctact--aaaaatac----------aaaaacttagccaggagtggtggcatgcacctgtagtcccag-------ctacttgggaggctgaggcaggggaatcacttgaacctgggagacagaggttgcagtgagccgagattgtgccactgcactccagcctgggtg--agagcgagactc---tgtctc-----aaaaa
i saiBol1.JH378378          C 0 C 0
s otoGar3.GL873530            5758618 336 -  36342412 CCTTGAGT--------TAACAT------------------------------TGGGAGGA---------------------AGG------------------------------------------------------------------------AA---AGAAA------ACAGAAATAGAAAATGTA----ggctggc----cacagtggcatacacttgtaatcctagcactctgggaggccaaggcaggaggatcacttgaactcag----ctgttgggaaccagactgagaaagatggaga---cccatccctact--aaaac-----------tagaaaaattagccagg-gtcatggtaggtgcctgtagtcccag-------ctacttgggaggctgaggcaggaggatggcttgagtccaggagtttgaggttgctgtaagctaggctgtcaccatgtcactctagcttggacaacagattgcaactcctatgtctc-----caaaa
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90169228 1388 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             814477   3 +   1727078 I
e canFam3.chr3               58188322 594 +  91889043 I
e cebCap1.NW_016107334v1        59737 1543 +  11725426 M

a score=15851.000000
s hg38.chr15_KI270850v1_alt      7430  9 +    430880 aagc----tgggg
s panTro5.chr15              63455090  9 +  83230942 aaGC----TGGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23030169 10 -  99763055 aaaa---gcaggg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2523316  9 +   2806052 aaGC----TGGGG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22690611 13 - 121039945 aaaaGGGGGAGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113286564  9 - 169600520 aaaa----aaaGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114631619  9 - 171882078 aaaa----aaagt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3878981  9 +   4820037 aaaa----aaaGT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9746427  9 +  10730278 aaaa----aaaGT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4594500  9 +  58131712 aaaa----aaagt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3866485  9 +   4030761 aaaa----aaaGT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3993475  9 +   5013933 aaaa----aaaGT
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              47924  9 -    125141 aaaa----aaaaa
i saiBol1.JH378378          C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90169228 1388 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             814477  3 +   1727078 I
e canFam3.chr3               58188322 594 +  91889043 I
e cebCap1.NW_016107334v1        59737 1543 +  11725426 M
e otoGar3.GL873530            5758954  0 -  36342412 C

a score=130818.000000
s hg38.chr15_KI270850v1_alt      7439 23 +    430880 gcaaagaatataaagatttttgc
s panTro5.chr15              63455099 23 +  83230942 Gcaaagaatataaagatttttgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23030179 21 -  99763055 gcaaagaatat--agattcttgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2523325 23 +   2806052 Gcaaagaatataaagatttttgc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22690624 21 - 121039945 GCaaaaaatat--agactcttgc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113286573 21 - 169600520 GCAAAGAatat--agattcttgc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114631628 21 - 171882078 gcaaagaatat--agattcttgc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3878990 21 +   4820037 GCAAAGAatat--agattcttgc
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9746436 21 +  10730278 GCAAAGAatat--agattcttgc
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4594509 21 +  58131712 gcaaagaatat--agattcttgc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3866494 21 +   4030761 GCAAAGAatat--agattcttgc
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3993484 21 +   5013933 GCAAAGAatat--agattcttgc
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              47933 20 -    125141 aaaaaaaaga---aGGGTcttgc
i saiBol1.JH378378          C 0 C 0
s dasNov3.JH579681             814480 23 +   1727078 gcacagaatatgaagattcttgg
i dasNov3.JH579681          I 3 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90169228 1388 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58188322 594 +  91889043 I
e cebCap1.NW_016107334v1        59737 1543 +  11725426 M
e otoGar3.GL873530            5758954  0 -  36342412 C

a score=837026.000000
s hg38.chr15_KI270850v1_alt      7462 105 +    430880 cttcctaga--ctacattgggaggggagggagaaaacaaataaatagaaaaaataatgaaaatgctaagtgatatggtatgtcagaagtgctatggggaaaaataaa
s panTro5.chr15              63455122 105 +  83230942 cttcctaga--ctacattgggaggggagggagaaaacaaataaatagaaaaaataatgaaaatgctaagtgatatggtatgtcagaagtgctatggggaaaaataaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23030200 105 -  99763055 cttcctaga--ttacactgggagggaagggagaaaacaaataaatagaaaaaataatgaaaatgctaagtgacatggtatgtcaggagtgctgtggggaaaaataaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2523348 105 +   2806052 cttcctaga--ctacattgggaggggagggagaaaacaaataaatagaaaaaataatgaaaatgctaagtgatatggtatgtcagaagtgctatggggaaaaataaa
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22690645 105 - 121039945 cttcctaga--ctgcactgggagggaagggagaaaacaaataaatagaaaaaataatgaaaatgctaagtgatatggtatgtcagaagtgctatggggaaaaataaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113286594 105 - 169600520 cttcctaga--ctacattgggaggggtgcgagaaaacaaataaatagaaaaaatactgaaaatgctaagtgatatggtatgtcagaagtgctatggggaaaaacaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114631649 105 - 171882078 cttcctaga--ctacattgggaggggtgcgagaaaacaaataaatagaaaaaatactgaaaatgctaagtgatatggtatgtcagaagtgctatggggaaaaacaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3879011 105 +   4820037 cttcctaga--ctacattgggaggggtgcgagaaaacaaataaatagaaaaaatactgaaaatgctaagtgatatggtatgtcagaagtgctatggggaaaaacaaa
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9746457 105 +  10730278 cttcctaga--ctacattgggaggggtgcgagaaaacaaataaatagaaaaaatactgaaaatgctaagtgatatggtatgtcagaagtgctatggggaaaaacaaa
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4594530 105 +  58131712 cttcctaga--ctacattgggaggggtgcgagaaaacaaataaatagaaaaaatactgaaaatgctaagtgatatggtatgtcagaagtgctatggggaaaaacaaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3866515 105 +   4030761 cttcctaga--ctacattgggaggggtgcgagaaaacaaataaatagaaaaaatactgaaaatgctaagtgatatggtatgtcagaagtgctatggggaaaaacaaa
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3993505 105 +   5013933 cttcctaga--ctacattgggaggggtgcgagaaaacaaacaaagagaaaaaatactgaaaatgctaagtgatatggtatgtcagaagtgctatggggaaaaacaaa
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              47953  93 -    125141 cttcctaga--ctacattgggaggggagagagaacacaaataaatag------------aagtgttaagtgatatggtatgtccgaagtgctatggggaaaaacaaa
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        61314 105 +  11725426 CTTCCTaga--ctacattgggaggggagagagaaaacaaataaatagaaaaaataatgaaagtgttaagtgatacggtatgtccaaagtgctatggggaaaaataaa
i cebCap1.NW_016107334v1    M 1543 I 10
s dasNov3.JH579681             814503 105 +   1727078 tctcctagagcttacattgtgggggcaggggaaaagcagacaagttgtaggaaaaaacaaacaagtgaatgtca-gtaatgtcaggagtgctatggcaaaaaatag-
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90169228 1388 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58188322 594 +  91889043 I
e otoGar3.GL873530            5758954   0 -  36342412 C

a score=108352.000000
s hg38.chr15_KI270850v1_alt      7567 17 +    430880 gcaaggaagagggatac
s panTro5.chr15              63455227 17 +  83230942 gcaaggaagagggatac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23030305 17 -  99763055 gaaaggaagggggatag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2523453 17 +   2806052 gcaaggaagagagatac
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22690750 17 - 121039945 gcaaggaagggggaaag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113286699 17 - 169600520 gcaaggaagggggatag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114631754 17 - 171882078 gcaaggaagggggatag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3879116 17 +   4820037 gcaaggaagggggatag
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9746562 17 +  10730278 gcaaggaagggggatag
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4594635 17 +  58131712 gcaaggaagggggatag
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3866620 17 +   4030761 gcaaggaagggggatag
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3993610 17 +   5013933 gcaaggaagggggatag
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              48046 17 -    125141 gaaaggaacggagagat
i saiBol1.JH378378          C 0 I 2
s dasNov3.JH579681             814608 13 +   1727078 ----gggaggggcatag
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90169228 1388 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58188322 594 +  91889043 I
e cebCap1.NW_016107334v1        61419 10 +  11725426 I
e otoGar3.GL873530            5758954  0 -  36342412 C

a score=752543.000000
s hg38.chr15_KI270850v1_alt      7584 101 +    430880 ggagagccagggagttgcaattttaaaataaagtcatta--taggaggcctcattgagaaggagacatttgagcaagaactcaaaagtgagtggtttagccac
s panTro5.chr15              63455244 101 +  83230942 ggagagccagggagttgcaattttaaaataaagtcatta--taggaggcctcattgagaaggagacatttgagcaagaactcaaaagtgagtggtttagccac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23030322 101 -  99763055 ggagagctagggagttgcaattttaaaataaagtcatta--gaggaggcctcattgagaaggagacatttgagcaacaacccaaaagtgaatggtttagccac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2523470 101 +   2806052 agagagccagggagttgcaattttaaaataaagtcatta--taggaggcctcattgagaaggagacatttgagcaagaactcaaaagtgagtggtttagccac
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22690767 101 - 121039945 agagagccagggaattgcaattttaaaataaagtcatta--gaggaggcctcattgagaaggagacatttgagcaagaacccaaaagtgaatggtttagccac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113286716 101 - 169600520 ggagagccagggagttgcaattttaaaataaagtcatta--gaggaggcctcatggagaaggagacatttgagcaagaactcaaaagtgagtgctttagccac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114631771 101 - 171882078 ggagagccagggagttgcaattttaaaataaagtcatta--gaggaggcctcattgagaaggagacatttgagcaagaactcaaaagtgagtgctttagccac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3879133 101 +   4820037 ggagagccagggagttgcaattttaaaataaagtcgtta--gaggaggcctcattgagaaggagacatttgagcaagaactcaaaagtgagtgctttagccac
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9746579 101 +  10730278 ggagagccagggagttgcaattttaaaataaagtcatta--gaggaggcctcattgagaaggagacatttgagcaagaactcaaaagtgagtgctttagccac
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4594652 101 +  58131712 ggagagccagggagttgcaattttaaaataaagtcatta--gaggaggcctcattgagaaggagacatttgagcaagaactcaaaagtgagtgctttagccac
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3866637 101 +   4030761 ggagagccagggagttgcaattttaaaataaagtcatta--gaggaggcctcattgagaaggagacatttgagcaagaactcaaaagtgagtgctttagccac
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3993627 101 +   5013933 ggagagccagggagttgcaattttaaaataaagtcatta--gaggaggcctcattgagaaggagacatttgagcaagaactcaaaagtgagtggtttagccac
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              48065  90 -    125141 --------agggagctgcaattttaaaataaagtcgttatttatttggcctcatcgagaaggagac--ttgagcaagaactcaaaagtgggtagtttagc---
i saiBol1.JH378378          I 2 C 0
s cebCap1.NW_016107334v1        61429  98 +  11725426 ggagatacagggagctgcgatctaaaaataaagtcattttttatttggcctcatcaagaaggagac--ttgcgcaaaaactcaaaagtgagtagtttagc---
i cebCap1.NW_016107334v1    I 10 C 0
s dasNov3.JH579681             814621  75 +   1727078 ----ggacagggagttgcagttttaaaacattgaggtca---gggaggcctctctg---aggagacattagagcaaggactggaa------------------
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e mm10.chr9                  90169228 1388 + 124595110 I
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58188322 594 +  91889043 I
e otoGar3.GL873530            5758954   0 -  36342412 C

a score=1475295.000000
s hg38.chr15_KI270850v1_alt      7685 182 +    430880 gtggaaaacagagggaagagtgttgcaggtgtagggaacagcaatgcaaaatcc-tgaagcagcagcatgtctggcctgt-ggaggaactgcaaggaggccagtgggcggagtggagggaactaagaaggtgtagctggaaatgagattggacaggtcaccttgcctagcgtctcatacaggcc------
s panTro5.chr15              63455345 182 +  83230942 gtggaaaacagagagaagagtattgcaggtgtagggaagagcaatgcaaaatcc-tgaagcaggagcatgtctggcctgt-ggaggaactgcaaggaggccagtgggcggagtggagggaactaagaaggtgtagctggaaatgagattggacaggtcaccttgcctagcgtctcatacaggcc------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23030423 182 -  99763055 gtggaaaacagagagaagagtgttccaggtgtagggaacagcaatgcaaaatcc-tgaagcaggagcacgtctggcctgt-ggaggaactgcaaggaggccagtgggtggagtggagggaactagggctgtgtagctggacatgagattggagaggtcaccttgcctagggcctcatacaggcc------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2523571 182 +   2806052 gtggaaaacagagagaagagtgttgcaggtgtagggaacagcaatgcaaaatcc-tgaagcaggagcatgtctggcctgt-ggaggaactgcaaggaggccagtgggcggagtggagggaactaagaaggtgtagctggaaatgagattggacaggtcaccttgcctagcgtctcatacaggcc------
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22690868 181 - 121039945 gtggaaaacagagagaagagtgttccaggtgtagggaacagcaatgcaaaatcc-tgaagcagga-catgtctggcctgt-ggaggaactgcaaggaggccagtgggtggagtggagggaactaaggcggtgtagctggaaatgagattggagaggttaccttgcctagggcctcacacaggcc------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113286817 182 - 169600520 gtggaaaacagagagaagagtgttcccggtgtagggaacatcaatgcaaaatcc-tgaagcaggagcatgtctggcctgt-ggaggaactgcaaggaggccagtgggcggagtggagggaactaaggcggtgtagctggaaatgagactggagaggttaccttgcctagggcctcgtataggcc------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114631872 182 - 171882078 gtggaaaacagagagaagagtgttccaggtgtagggaacatcaatgcaaaatcc-tgaagcaggagcatgtctggcctgt-ggaggaactgcaaggaggccagtgggcggagtggagggaactaaggcggtgtagctggaaatgagactggagaggttaccttgcctagggcctcgtataggcc------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3879234 182 +   4820037 gtggaaaacagagagaagagtgttccaggtgtagggaacatcaatgcaaaatcc-tgaagcagaagcatgtctggcctgt-ggaggaactgcaaggaggccagtgggcggggtggagggaactaaggcggtgtagctggaaatgagactggagaggttaccttgcctagggcctcgtataggcc------
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9746680 182 +  10730278 gtggaaaacagagagaagagtgttccaggtgtagggaacatcaatgcaaaatcc-tgaagcaggagcatgtctggcctgt-ggaggaactgcaaggaggccagtgggcggagtggagggaactaaggcggtgtagctggaaatgagactggagaggttaccttgcctagggcctcgtataggcc------
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4594753 182 +  58131712 gtggaaaacagagagaagagtgttccaggtgtagggaacatcaatgcaaaatcc-tgaagcaggagcatgtctggcctgt-ggaggaactgcaaggaggccagtgggcggagtggagggaactaaggcggtgtagttggaaatgagactggagaggttaccttgcctagggcctcatataggcc------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3866738 182 +   4030761 gtggaaaacagagagaagagtgttccaggtgtagggaacatcaatgcaaaatcc-tgaagcaggagcatgtctggcctgt-ggaggaactgcaaggaggccagtgggcggagtggagggaactaaggcggtgtagctggaaatgagactggagaggttaccttgcctagggcctcgtataggcc------
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3993728 182 +   5013933 gtggaaaacagagagaagagtgttccaggtgtagggaacatcaatgcaaaatcc-tgaagcaggagcatgtctggcctgt-ggaggaactgcaaggaggccagtgggcggagtggaggcaactaaggcggtgtagctggaaatgagactggagaggttaccttgcctagggcctcatataggcc------
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              48155 174 -    125141 --------cagaaagaagagtgttctaggtgtacagagctgcaatgccaaatcc-tgaagcaggagcgtgtctggccagt-gggggagatgccaggaggctagtggacagaatggagggaactctggcggtgcagcgggaaatgagaccggagaggtcaggtcgcctagggcctcatacaggcc------
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        61527 173 +  11725426 --------cagaaaga--agtgttctaagtgtagggagctgcaatgccaaatcc-tgaagcaggagcgtgtctggcctgcggggggaaatgcaaggaggccagtggacagaatggaaagagcccaggcagtgcagctggaaatgagactggagaggtcagctggcctagggcctcatacaggcc------
i cebCap1.NW_016107334v1    C 0 I 8
s mm10.chr9                  90170616 164 + 124595110 GTGGAAGATAgagggtaggttgtt-cacacacagggaacaacaatgcaaaa-cc-tgaggtggggacacatctggcttgc-tgagtaacatctc-gaggctgggaggtctagcagaggga-------------agttggagatgagattggagagacctccttgcctagggcctcatgt--gcc------
i mm10.chr9                 I 1388 I 6
s dasNov3.JH579681             814696 157 +   1727078 ------------ggaggaagtgcaccaggcagagggaacagcagtgcaaaatccttgaggcaggaacaggtatggcctgtttgagtatcatcaatggggccagtgggctggagtgggggtattgggcaggagaagttggaga-------------------ttgcatggggcctcata--ggtcattgcc
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58188322 594 +  91889043 I
e otoGar3.GL873530            5758954   0 -  36342412 C

a score=150333.000000
s hg38.chr15_KI270850v1_alt      7867 18 +    430880 agaactttgtcttttgct
s panTro5.chr15              63455527 18 +  83230942 agaactttgtcttttgct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23030605 18 -  99763055 agaactttgtcttttgct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2523753 18 +   2806052 agaactttgtcttttgct
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22691049 18 - 121039945 agaactttgtcttttgct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113286999 18 - 169600520 agaactttgtcttttgct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114632054 18 - 171882078 agaactttgtcttttgct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3879416 18 +   4820037 agaactttgtcttttgct
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9746862 18 +  10730278 agaactttgtcttttgct
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4594935 18 +  58131712 agaactttgtcttttgct
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3866920 18 +   4030761 agaactttgtcttttgct
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3993910 18 +   5013933 agaactttgtcttttgct
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              48329 18 -    125141 agaattttgtgttttgct
i saiBol1.JH378378          C 0 I 1
s mm10.chr9                  90170786 18 + 124595110 ggaatattgcactgcact
i mm10.chr9                 I 6 C 0
s dasNov3.JH579681             814853 18 +   1727078 agaacttcatcttttgct
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58188322 594 +  91889043 I
e cebCap1.NW_016107334v1        61700  8 +  11725426 I
e otoGar3.GL873530            5758954  0 -  36342412 C

a score=-40582.000000
s hg38.chr15_KI270850v1_alt      7885 5 +    430880 c---gagt
s panTro5.chr15              63455545 5 +  83230942 c---gagt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23030623 6 -  99763055 ct--gagt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2523771 5 +   2806052 c---cagt
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22691067 2 - 121039945 c------t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113287017 4 - 169600520 c----cat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114632072 4 - 171882078 c----cat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3879434 4 +   4820037 c----cat
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9746880 4 +  10730278 c----cat
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4594953 4 +  58131712 c----cgt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3866938 4 +   4030761 c----cat
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3993928 4 +   5013933 c----cgt
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              48348 5 -    125141 -t--gggt
i saiBol1.JH378378          I 1 C 0
s cebCap1.NW_016107334v1        61708 5 +  11725426 -g--aggt
i cebCap1.NW_016107334v1    I 8 C 0
s mm10.chr9                  90170804 6 + 124595110 -ct-aagt
i mm10.chr9                 C 0 C 0
s dasNov3.JH579681             814871 6 +   1727078 --ctgagt
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       652713 2048 +    730879 I
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58188322 594 +  91889043 I
e otoGar3.GL873530            5758954 0 -  36342412 C

a score=479382.000000
s hg38.chr15_KI270850v1_alt      7890 53 +    430880 gagatgggcaccattgcaggattttgagcagag-aaggaccatgatcaggctgg-----
s panTro5.chr15              63455550 53 +  83230942 gagatgggcgccattgcaggattttgagcagag-aaggaccatgatcaggctgg-----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23030629 53 -  99763055 gagatgggcgccattgcaggattttgagcagag-taagacgatgatcgcgctgg-----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2523776 53 +   2806052 gagatgggcgccattgcaggattttgagcagag-aaggaccatgatcaggctgg-----
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22691069 53 - 121039945 gagatgggcgccattgcaggattttcagcagag-taagacgatgatcgcgctgg-----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113287021 53 - 169600520 gagatgggcaccattgcaggattttgagcagag-taagaccatgattgcgctgg-----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114632076 53 - 171882078 gagatgggcaccattgcaggattttgagcagag-taagaccatgattgcgctgg-----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3879438 53 +   4820037 gagatgggcaccattgcaggattttgagcagag-tgagaccatgattgcgctgg-----
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9746884 53 +  10730278 gagatgggcaccattgcaggattttgagcagag-taagaccatgattgcgctgg-----
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4594957 53 +  58131712 gagatgggcacgattgtaggattttgagcagag-taagaccatgatcgcgctgg-----
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3866942 53 +   4030761 gagatgggcaccattgcaggattttgagcagag-taagaccatgattgcgctgg-----
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3993932 53 +   5013933 gagatgggcgccattgcaggattttgagcagag-taagaccatgatcgcgctgg-----
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              48353 53 -    125141 gaaatgtgagccactgtaggattttgagcagag-taggaccgtgatcgggctgg-----
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        61713 53 +  11725426 gaaatgtgagccattgcagaattttgagcagag-taggaccgtgatccggctag-----
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       654761 53 +    730879 gagatgagcgccgttgcaggattttgagcagag-taggaccgtgagcgggctgg-----
i aotNan1.NW_018503093v1    I 2048 C 0
s mm10.chr9                  90170810 46 + 124595110 gggatgggggtagccgcagtgtcataggcacagttaagatcatggc-------------
i mm10.chr9                 C 0 C 0
s dasNov3.JH579681             814877 58 +   1727078 gagatgagagtcagtgcaggattttgagcagag-gagagccatgatctgaccagttttg
i dasNov3.JH579681          C 0 I 670
e calJac3.chr10             113717393 2792 - 132174527 I
e canFam3.chr3               58188322 594 +  91889043 I
e otoGar3.GL873530            5758954  0 -  36342412 C

a score=662916.000000
s hg38.chr15_KI270850v1_alt      7943 84 +    430880 ttttgaatga----ctctggctgct-----atattgaaaacatgaggggaggggcacctggggtaggcaatagtggaaacagagagacctgtt-----
s panTro5.chr15              63455603 84 +  83230942 ttttgaatga----ctctggctgct-----atattgaaaacatgaggggaggggcacctggggtaggcaatagtggaaacagggagacctgtt-----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23030682 93 -  99763055 ttttgaatgaatctttctggctgctttcccttggtgaaaacacgaggggaggggcacctggtgtaggcaatagtgaaaacagagagacctgtt-----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2523829 84 +   2806052 ttttgaatga----ctctggctgct-----atattgaaaacatgaggggaggggcacctggggtaggcaatagtggaaacagggagacctgtt-----
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22691122 93 - 121039945 ttttgaatgaatctttctggctgctttcccttcgtgaaaacacgaggggaggggcacctggggtaggcaatagtgaaaacagagagacctgtt-----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113287074 79 - 169600520 ttttgaatgaatctttctggcttct-----atattgaaaacacgaggggaggggcacctggggtaggc---------aacagagagacctgtt-----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114632129 88 - 171882078 ttttgaatgaatctttctggcttct-----atattgaaaacacgaggggaggggcacctggggtaggcaatagttgaaacagagagacctgtt-----
i macFas5.chr7              C 0 I 3766
s macNem1.NW_012011533v1      3879491 88 +   4820037 ttttgaatgaatctttctggcttct-----atattgaaaacacgaggggaggggcacctggggtaggcaatagttgaaacagagagacctgtt-----
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9746937 88 +  10730278 ttttgaatgaatctttctggcttct-----atattgaaaacacgaggggaggggcacctggggtaggcaatagttgaaacagagagacctgtt-----
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4595010 88 +  58131712 ttttgaatgaatctttctggcttct-----atattgaaaacacgaggggaggggcacctggggtaggcaatagttgaaacagagagacctgtt-----
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3866995 88 +   4030761 ttttgaatgaatctttctggcttct-----atattgaaaacacgaggggaggggcacctggggtaggcaatagttgaaacagagagacctgtt-----
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3993985 88 +   5013933 ttttgaatgaatctttctggcttct-----atattgaaaacacgaggggaggggcacctggggtaggcaatagttgaaacagagagacctgtt-----
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              48406 88 -    125141 ttttgaatgactctttctggctgct-----atgttgaaaataacaggggaggggcgcctggggtaggcgatagtggtaacagggagacttgtt-----
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        61766 67 +  11725426 ttttgaatgaatttttctggctgct-----atgttgaaaataacaggggaggggcaCCTG---------------------GGCACACTTGTT-----
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       654814 88 +    730879 ttttgaatgaatctttctggctgct-----atgttgaaaataataggggaggggcccctggggtaggcaatagtggacacagggagactcgtt-----
i aotNan1.NW_018503093v1    C 0 C 0
s mm10.chr9                  90170856 72 + 124595110 -----------tccttctggttgct-----atgttgaaatgagttgataaaggactcctgatgt----------ttaagcccggagattagatgggtt
i mm10.chr9                 C 0 C 0
e calJac3.chr10             113717393 2792 - 132174527 I
e dasNov3.JH579681             814935 670 +   1727078 I
e canFam3.chr3               58188322 594 +  91889043 I
e otoGar3.GL873530            5758954  0 -  36342412 C

a score=153276.000000
s hg38.chr15_KI270850v1_alt      8027 14 +    430880 aagaagttaccgca
s panTro5.chr15              63455687 14 +  83230942 aagaagttaccgca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23030775 14 -  99763055 aagaagttaccgca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2523913 14 +   2806052 aagaagttaccgca
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22691215 14 - 121039945 aagaagttaccgca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113287153 14 - 169600520 aagaagttaccgca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114635983 14 - 171882078 AAGAAGTTACCGCA
i macFas5.chr7              I 3766 C 0
s macNem1.NW_012011533v1      3879579 14 +   4820037 aagaagttaccgca
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9747025 14 +  10730278 aagaagttaccgca
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4595098 14 +  58131712 aagaagttaccgca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3867083 14 +   4030761 aagaagttaccgca
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3994073 14 +   5013933 aagaagttaccgca
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113720185 14 - 132174527 AAGAAGTTGCCGTA
i calJac3.chr10             I 2792 C 0
s saiBol1.JH378378              48494 14 -    125141 aagaagttgcctta
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        61833 14 +  11725426 AAGAAGTTGCCGCA
i cebCap1.NW_016107334v1    C 0 I 9
s aotNan1.NW_018503093v1       654902 14 +    730879 aagaagatgccgta
i aotNan1.NW_018503093v1    C 0 C 0
s mm10.chr9                  90170928 14 + 124595110 caggagttactgta
i mm10.chr9                 C 0 C 0
e dasNov3.JH579681             814935 670 +   1727078 I
e canFam3.chr3               58188322 594 +  91889043 I
e otoGar3.GL873530            5758954  0 -  36342412 C

a score=90917.000000
s hg38.chr15_KI270850v1_alt      8041 18 +    430880 gcaatccaggccgggca-g
s panTro5.chr15              63455701 17 +  83230942 gcaatccaggctgggc--g
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23030789 17 -  99763055 gcaatccaggccgggc--g
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2523927 17 +   2806052 gcaatccaggctgggc--g
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22691229 17 - 121039945 gcaatccaggccgggc--g
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113287167 19 - 169600520 gcaatccaggccgggcgcg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114635997 19 - 171882078 GCAATCCAggccgggcgcg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3879593 19 +   4820037 gcaatccaggccgggcgcg
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9747039 19 +  10730278 gcaatccaggccgggcgcg
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4595112 19 +  58131712 gcaatccaggccgggcgcg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3867097 19 +   4030761 gcaatccaggccgggcgcg
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3994087 19 +   5013933 gcaatccaggccgggcgcg
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113720199 17 - 132174527 GCAATTTACGCCTAATg--
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              48508 17 -    125141 ggaatttacgtcgagtg--
i saiBol1.JH378378          C 0 C 0
s aotNan1.NW_018503093v1       654916 17 +    730879 gcagtttaCAccgggcg--
i aotNan1.NW_018503093v1    C 0 C 0
s mm10.chr9                  90170942 18 + 124595110 ggagttcagatggagaaa-
i mm10.chr9                 C 0 C 0
e dasNov3.JH579681             814935 670 +   1727078 I
e canFam3.chr3               58188322 594 +  91889043 I
e cebCap1.NW_016107334v1        61847  9 +  11725426 I
e otoGar3.GL873530            5758954  0 -  36342412 C

a score=793787.000000
s hg38.chr15_KI270850v1_alt      8059 88 +    430880 cagtggctcacgcctgtaattccagcactttgggaggctgaggccagcatatcccctgagctcaggaatc-tgagaccagcctggctaa
s panTro5.chr15              63455718 88 +  83230942 cagtggctcacgcctgtaattccagcactttgggaggccgaggccagcatatcccctgagctcaggaatc-tgagaccagcctggctaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23030806 88 -  99763055 cagtggctgacgcctgtaattgcagcactttgggaggccgaggcgagcgtatcacctgagttcaggagtt-tgagaccagcctggccaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2523944 88 +   2806052 cagtggctcacgcctgtaattccagcactttgggaggccgaggccagcatatcccctgagctcaggaatc-tgagaccagcctggctaa
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22691246 88 - 121039945 cagtggctgacgcctgtaattgctacactttaggaggctgaggcgagcatatcacctgagttcaggagtt-tgaggccagcctggccaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113287186 88 - 169600520 cagtagctcgcgcctgtaattccagcactttgggaggccgaagagagcgtatcgcctgagttcaggagct-tgagaccagcctggtcaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              114636016 88 - 171882078 cagtagctcgcgcctgtaattccagcactttgggaggccgaagagagcgtatcgcctgagttcaggagct-tgagaccagcctggtcaa
i macFas5.chr7              C 0 N 0
s macNem1.NW_012011533v1      3879612 88 +   4820037 cagtagctcgcgcctgtaattccagcactttgggaggccgaagagagcgtatcgcctgagttcaggagct-tgagaccagcctggtcaa
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9747058 88 +  10730278 cagtagctcgtgcctgtaattcctgcactttgggaggccgaagagagcgtatcgcctgagttcaggagct-tgagaccagcctggtcaa
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4595131 88 +  58131712 cagtggctcgcgcctgtaattccagcactttgggaggccgaagcgagcgtatcgcctgagttcaggagct-tgagaccagcctggtcaa
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012102632v1      3867116 88 +   4030761 cagtagctcgtgcctgtaattccagcactttgggaggccgaagagagcgtatcgcctgagttcaggagct-tgacaccagcctggtcaa
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3994106 88 +   5013933 cagtggctcgcgcctgtaattccagcactttgggaggccgaagcgagcgtatcgcctgaattcaggagct-tgagaccagcctggtcaa
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113720216 88 - 132174527 cagtggctcacacctgtaatttcaacactctgggaggctgacatgagtgtatcacctgagttcaggagtt-tgagaccagcctggccaa
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              48525 88 -    125141 cagtggctcacacctgcaatttcaacagtctgggaggccgacgtgagtggatcacctgagttcaggagtt-tgagaccagcctggccaa
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        61856 88 +  11725426 cagtggctcacacctgtaatttcaacactctgggaggctgacgtgagtggatcacctgagttcaggagtt-tgagaccagcctggccaa
i cebCap1.NW_016107334v1    I 9 C 0
s aotNan1.NW_018503093v1       654933 88 +    730879 cagtggctcacacctgcagtttcagcactctgggaggccgacgtgagtggatcacctgagttcaggagtt-tgagaccagcctggccaa
i aotNan1.NW_018503093v1    C 0 C 0
s mm10.chr9                  90170960 28 + 124595110 -------------------------------------------------------ctgaggcatggaatgatgagac------agcaaa
i mm10.chr9                 C 0 C 0
e dasNov3.JH579681             814935 670 +   1727078 I
e canFam3.chr3               58188322 594 +  91889043 I
e otoGar3.GL873530            5758954  0 -  36342412 C

a score=705980.000000
s hg38.chr15_KI270850v1_alt      8147 78 +    430880 catggtgaaatcctgtgtccactaaaaatacaaaaattagctgggcgtggtggtgcgtgcttctagtcccagctactc
s panTro5.chr15              63455806 78 +  83230942 catggtgaaatcctgtgtccactaaaaatacaaaaattagctgggcgtggtggtgcgtgcttctagtcccagctactc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23030894 78 -  99763055 catggtgaaatcctgtgtctgctaaaaatacaaaaaatagctgggcgtggtcgcgtgtgcctgtagtcccagctactc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2524032 78 +   2806052 catggtgaaatcctgtgtccactaaaaatacaaaaattagctgggcgtggtggtgcgtgcttctagtcccagctactc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22691334 78 - 121039945 catggtgaaatcctgtgtctgctaaaaatacaaaaaatagctgggcgtggtcgcgtgtgcctgtagtcccagctactc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113287274 78 - 169600520 catggtgaaatcctgtgtctactaaaaatacaaaaaatagctgggcgtggtcgcgtgtgactgtagtcccagctactc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61579836 50 + 171882078 cgtggtgaaatcctgtgtccactaaaaatacaaaaattagctgggtgtgg----------------------------
i macFas5.chr7              N 0 C 0
s macNem1.NW_012011533v1      3879700 78 +   4820037 catggtgaaatcctgtgtctactaaaaatacaaaaaatagctgggcgtggtcgcgtgtgactgtagtcccagctactc
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9747146 78 +  10730278 catggtgaaatcctgtgtctaccaaaaatacaaaaaatagctgggcgtggtcgcgtgtgactgtagtcccagctactc
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr26               4595219 78 +  58131712 catggtgaaatcctgtgtctactaaaaatacaaaaaatagctgggcgtggtcgcgtgtgactgtagtcccagctactc
i chlSab2.chr26             C 0 N 0
s manLeu1.NW_012102632v1      3867204 78 +   4030761 catggtgaaatcctgtgtctaccaaaaatacaaaaaatagctgggcgtggtcgcgtgtgactgtagtcccagctactc
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3994194 78 +   5013933 catggtgaaatcctgtgtctactaaaaatacaaaaaataactgggcgtggtcgcgtgtgactgtagtcccagctactc
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113720304 76 - 132174527 catggcgaaatc--gtctctactaaaaatacaaaacttacctgggcgtggtggcaagtgcctgtagtcccagctactt
i calJac3.chr10             C 0 I 6
s saiBol1.JH378378              48613 78 -    125141 catggtgaaatcctgtctctactaaaaatacaaaaattacctgggcgtggtggcatgtgcctgtagtcccagctactt
i saiBol1.JH378378          C 0 I 6
s cebCap1.NW_016107334v1        61944 78 +  11725426 catggtgaaatcctgtcgctactaaaaatacaaaaattacctgggcaaggtggcatgtgcctgtagtcccagctactt
i cebCap1.NW_016107334v1    C 0 I 6
s aotNan1.NW_018503093v1       655021 77 +    730879 catggcaaaatcccgtctctactaaaaatacaaaaattagctgggcatggtggcgcgtgcc-gtagtcccagctactt
i aotNan1.NW_018503093v1    C 0 I 6
s mm10.chr9                  90170988 61 + 124595110 gatggtaaaa-------------aAGCATGGGAAA---agccgggcgtggtggcgcacgcctttaatcctagc-actc
i mm10.chr9                 C 0 C 0
e dasNov3.JH579681             814935 670 +   1727078 I
e canFam3.chr3               58188322 594 +  91889043 I
e otoGar3.GL873530            5758954  0 -  36342412 C

a score=988911.000000
s hg38.chr15_KI270850v1_alt      8225 126 +    430880 ------ctgaggtgggagaatcgctcaaacccaggaggcggaggttccagtgggccgagatcgcgccac-gcactc-----tagcctgggcgacagagcgaga----ctatctca----aaacaaccaacc-----------------aaaaaCCCAAAATAC
s panTro5.chr15              63455884 127 +  83230942 ------ctgaggtgggagaatcgctcaaacccaggaggcggaggttccagtgggccgagatcgcgccac-gcactc-----tagcctgggcgacagagcgaaa----ctatctca----aaacaaccaacca----------------aaaaaCCCAAAATAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23030972 123 -  99763055 ------ctgaggcgggagaatcgcttgaacccaggaggcagaggttgcagtgagccgagatcgcgccac-gcactc-----cagcctgggcgacagagcgaga----ctgtctca----aaacaaacaaac--------------------aacccaaaacac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2524110 127 +   2806052 ------ctgaggtgggagaatcgctcaaacccaggaggcggaggttccagtgggccgagatcgcgccac-gcactc-----tagcctgggcgacagagcgaga----ctatctca----aaacaaccaacca----------------aaaaaCCCAAAATAC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22691412 127 - 121039945 ------ctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagctgagatcgcgccac-gcactc-----cagcccgggcgacagagcgaga----ctgtctca----aaacaaacaaaca----------------aaaaaCCCAAAACAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113287352 131 - 169600520 ------ctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagccgagatcgcaccac-gcactc-----cagccccggcgacagagcgaga----ttgtctcaaaacaaacaaacaaaca----------------aaaaaCCCCAAACAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61579886 127 + 171882078 ------ctgaggcaggagaatccctcgaacccaggaggtggaagttgcagtgagccgagatcgtgccac-gcactc-----tagcctgggcgacagaacgaga----ctgtctca----aaacaagcaaaca----------------aaaaTCCCAAAACAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3879778 127 +   4820037 ------ctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagccgagatcgcaccac-gcactc-----cagccccggcgacagagcgaga----ttgtctca----aaacaaacaaaca----------------aaaaaCCCCAaacac
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9747224 131 +  10730278 ------ctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagccgagatcgcaccac-gcactc-----cagcccaggcgacagagcgaga----ttgtctcaaaacaaacaaacaaaca----------------aaaaaCCCCAAACAC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1307999 127 +  24206276 ------ctgaggcaggagaatccctcgaacccaggaggtggaggttgcagtgagccgagatcgtgccac-gcactc-----tagcctgggcgacagagcgaga----ctgtctca----aaacaagcaaaca----------------aaaaTCCCAAAACAC
i chlSab2.chr29             N 0 C 0
s manLeu1.NW_012102632v1      3867282 131 +   4030761 ------ctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagccgagatcgcaccac-gcactc-----cagcccaggcgacagagcgaga----ttgtctcaaaacaaacaaacaaaca----------------aaaaaCCCCAAACAC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3994272 130 +   5013933 ------ctcaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagccgagatcgcaccac-gcactc-----cagcccaggcgacagagtgaga----ctgtctcaaaacaaaaaaacaaaca----------------aaaa-CCCCAaacac
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113720386 107 - 132174527 ------ctgaggcaggagagtggcttgaacccaggagatggaggctgcagtgagccaagatcgcgtcactgcactc-----cagcctgggtgacagag-gagagactctgtctc--------------------------------------------aacac
i calJac3.chr10             I 6 C 0
s saiBol1.JH378378              48697 123 -    125141 ------ctgaggcaggagagtggcttgaacccaggagatggaggctgcagtgagccaagatcgtgccactgcactc-----cagcctgggcgacagag-gagagactctgtctca----aaacagacaa------------------------ccaaaaacac
i saiBol1.JH378378          I 6 C 0
s cebCap1.NW_016107334v1        62028 119 +  11725426 ------ctgaggcaggagagtggcttgaacccaggagaccgaggctgcagtgagccaagatctcgccactgcactc-----cagcctgggggacagag-gagagactctgtctc--------aaaacaa------------------------cccaaaacac
i cebCap1.NW_016107334v1    I 6 C 0
s aotNan1.NW_018503093v1       655104 123 +    730879 ------ctggggcaggagagtggcttgaacccgggagatggaggctgcagtgagccaagatcgcgccactgcactc-----cagcctgggcgacagag-gagagactctgtctca----aaacgaacaa------------------------CCCAAAACAC
i aotNan1.NW_018503093v1    I 6 C 0
s mm10.chr9                  90171049 139 + 124595110 aggaggcagaggcaggcggatttct---------------gagtttgagaccagcctggtctacagagt-gagttccaggacagccagggctacacagagaaa--acccgcctca----aaaaaatcaaaCAACCCAACCTTCCCCCTAAAAACAACAAAC--
i mm10.chr9                 C 0 C 0
e dasNov3.JH579681             814935 670 +   1727078 I
e canFam3.chr3               58188322 594 +  91889043 I
e otoGar3.GL873530            5758954   0 -  36342412 C

a score=40562.000000
s hg38.chr15_KI270850v1_alt      8351 11 +    430880 A------Aacaacaaca
s panTro5.chr15              63456011 14 +  83230942 A---aacaacaacaaca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23031095 14 -  99763055 a---aacaaCAACAACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2524237 11 +   2806052 A------AACAACAACA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22691539 11 - 121039945 A------AACAACAACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113287483 11 - 169600520 A------Aacaacaaca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61580013  8 + 171882078 A---------AACAACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3879905 11 +   4820037 a------aacaacaaca
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9747355 11 +  10730278 A------AACAACAACA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1308126  8 +  24206276 A---------AACAACA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3867413 11 +   4030761 A------AACAACAACA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3994402 17 +   5013933 aaacaacaacaacaaca
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113720493  7 - 132174527 a----------acaaca
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              48820  7 -    125141 a----------acaaCA
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        62147  7 +  11725426 c----------acaaca
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       655227  7 +    730879 A----------GCAACA
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5758954 11 -  36342412 ------aaagaaaaaga
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90171188 10 + 124595110 -------AAACAAAACA
i mm10.chr9                 C 0 C 0
e dasNov3.JH579681             814935 670 +   1727078 I
e canFam3.chr3               58188322 594 +  91889043 I

a score=18297.000000
s hg38.chr15_KI270850v1_alt      8362 2 +    430880 ac
s panTro5.chr15              63456025 2 +  83230942 ac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23031109 2 -  99763055 ac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2524248 2 +   2806052 AC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22691550 2 - 121039945 AC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113287494 2 - 169600520 ac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61580021 2 + 171882078 AC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3879916 2 +   4820037 ac
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9747366 2 +  10730278 AC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1308134 2 +  24206276 AC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3867424 2 +   4030761 AC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3994419 2 +   5013933 ac
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113720500 2 - 132174527 gc
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              48827 2 -    125141 GC
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        62154 2 +  11725426 gc
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       655234 2 +    730879 GC
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5758965 2 -  36342412 aa
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90171198 2 + 124595110 CC
i mm10.chr9                 C 0 I 150
s dasNov3.JH579681             815605 2 +   1727078 ac
i dasNov3.JH579681          I 670 C 0
e canFam3.chr3               58188322 594 +  91889043 I

a score=798502.000000
s hg38.chr15_KI270850v1_alt      8364  71 +    430880 ----------------------aa-------------aaggagttactgcaacaatccagatggagaaactgaggcacggaaagatgaaa-tagcagagttagtaga
s panTro5.chr15              63456027  71 +  83230942 ----------------------aa-------------AAGGAGTTACTGCAACAATCcagatggagaaactgaggcacggaaagatgaaa-tagcagagttagtaga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23031111  71 -  99763055 ----------------------aa-------------aagaagttactgcaacgatccagatggagaaactgaggcacggaaagatgaaa-tagcagagttagtaga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2524250  71 +   2806052 ----------------------AA-------------AAGGAGTTACTGCAACAATCcagatggagaaactgaggcacggaaagatgaaa-tagcagagttagtaga
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22691552  66 - 121039945 ----------------------AA-------------A-----TTACTGCAACGATCcagatggagaaactgaggcacggaaagatgaaa-tagcagagttagtaga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113287496  71 - 169600520 ----------------------aa-------------aataagttactgcaacgatccagatggagaaactgaggcacggaaagatgaaa-tggcaaagttagtaga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61580023  70 + 171882078 ----------------------AA-------------AAGAAGTTACTGCAACGATCcagatggagaaactgagacacggaaaggtgaaa--agcagagttagtaga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3879918  71 +   4820037 ----------------------aa-------------caaAAGTTACTGCAACGATCcagatggagaaactgaggcacggaaagatgaaa-tggcaaagttagtaga
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9747368  57 +  10730278 ----------------------AA-------------AATAAGTTACTGCAACGATCcagatggagaaactgaggcacggaa---------------agttagtaga
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1308136  70 +  24206276 ----------------------AA-------------AAGAAGTTACTGCAACGATCcagatggagaaactgaggcacggaaagatgaaa--agcagagttagtaga
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3867426  71 +   4030761 ----------------------AA-------------AATAAGTTACTGCAACGATCcagatggagaaactgaagcacggaaagatgaaa-tggcaaagttagtaga
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3994421  71 +   5013933 ----------------------aa-------------AATAAGTTACTGCAACGATCcagatggagaaactgaggcacggaaagatgaaa-tggcaaagttagtaga
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113720502  71 - 132174527 ----------------------aa-------------aagaaGttactgcaactatccagatggagaaactgaggcacggaaagatgaaa-tagcggagttagtaga
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              48829  71 -    125141 ----------------------AA-------------AAGAAGTTACCGCAACGATCcagatggagaaactgaggcagggaaggatgaaa-tagcagagttagtaga
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        62156  71 +  11725426 ----------------------aa-------------aagaagttactgcaacgatccagatggagaaactgaggcacggaaagatgaaa-tagcagagttagtagg
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       655236  71 +    730879 ----------------------AA-------------AAGAAGTTACTGCGACGATCcagatggagaaactgaggcacggaaagacgaaa-tagcagagttagtgga
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5758967  72 -  36342412 ----------------------ag-------------aaaaaGttactgcaatcatccagatggagaaactgaggcacggaaagattaaactagctgagctagcagg
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH579681             815607 106 +   1727078 aaggggaggtgggcaacagtggaagcagagacctgttaagaggttattgcaatagtccagatggagaaatggagacaccgagaggcaaaa-tagcagagctggtagg
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90171200 150 + 124595110 I
e canFam3.chr3               58188322 594 +  91889043 I

a score=1112143.000000
s hg38.chr15_KI270850v1_alt      8435 120 +    430880 tagcccagcgagg-atttgaatccagatactctgac----tccagcagccccctcttggccgct-CCCCTCTGGTCCCTGGCCACCAGCAAGGACCC-CGGTCTGCCCTGGGCCT-AAGG---CCTTTGTG
s panTro5.chr15              63456098 120 +  83230942 tagcccagcgagg-atttgaatccagatactctgac----tccagcagccccctcttggccgct-CCCTTCTGGTCCCCGGCCACCAGCAAGGACCC-GGGTCTGCCCTGGGCCT-AAGG---CCTTTGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23031182 119 -  99763055 tagcccggcgagg-atttgaatccagatactctgac----tccagcagccccctcttggccgct-CCCTTCTGGTCCCCGGCCACCAGCAAGGACCC-GGGTCTGCCCTGGGCCT--AGG---CGTTTGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2524321 120 +   2806052 tagccctgcgagg-atttgaatccagatactctgac----tccagcagccccctcttggccgct-CCCCTCTGGTCCCTGGCCACCAGCAAGGACCC-GGGTCTGCCCCGGGCCT-AAGG---CCTTTGTG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22691618 118 - 121039945 tagcccagcgagg-atttgaatccatatactctgac----tccagcagccccctcttggccgct-CCCTTCTGGTCCCCGGCCACCAGCAAAGATCC-GGGTCTGCCCTGGGCCT-AGGG-----GTTGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113287567 119 - 169600520 tagcccagggagg-atttgaatccagatactctgac----tccagcagccccctcttggccgct-TCCTTCTTGTCTCCGGCCACCAGCAAGAACCC-GGGTCTGCCCTGGGCTT--AGG---CGTTTGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61580093 119 + 171882078 cagcacagcgagg-atttgaatccggatactctgac----tccagcagccccctcttggccgct-ccactctggtccccGGTCACCAGCAAGGACCC-GGGTCTGCCCTGGGCCT--AGG---CGTTTGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3879989 119 +   4820037 tagcccagggagg-atttgaatccagatactctgac----tccagcagccccctcttggccgct-TCCTTCTTGTCTCCGGCCACCAGCAAGAACCC-GGGTCTGCCCTGGGCTT--AGG---CGTTTGTG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9747425 119 +  10730278 tagcccagggagg-atttgaatccagatactctgac----tccagcagcccCCTCTTGGCCGCT-CCCTTCTTGTCTCCGGCCACCAGCAAGAACCC-GGGTCTGCCCTGGGCTT--AGG---CGTTTGTG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1308206 119 +  24206276 cagcacagcgagg-atttgaatccggatactctgac----tccagcagccccctcttggccgct-ccactctggtccccGGTCACCAACAAGGACCC-GGGTCTGCCCTGGGCCT--AGG---CGTTTGTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3867497 119 +   4030761 tagcccagggagg-atttgaatccagatactctgac----tccagcagccccctcttggccgct-CCCTTCTTGTCTCCGGCCACCAGCAAGAACCC-GGGTCTGCCCTGGGCTT--AGG---CGTTTGTG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3994492 119 +   5013933 tagcccagggagg-atttgaatccagatactctgac----tccagcagccccctcttggccgct-CCCTTCTGGTCTCCGGTCACTAGCAAGGACCC-GGGTCTGCCCTGGGCTT--AGG---CGTTTGTG
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113720573 116 - 132174527 cagcccagggagg-atttgaatccagatactctgac----tccagccgccccctcctggccgc------tctgGTCCCTGGCCATCGGCAAGGACCT-GGGTCTGGCTTGGGCCTCTAGG---CATTCGTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              48900  99 -    125141 tagcccagcgagg-atttgaatccagatattctgac----tcc--------------ggCCGC------TCTGGTCCCCGGCCACCGGCGAGGACTC-GGGTCTGACCTGGGCCT---GG---CATTCGTG
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        62227 113 +  11725426 tagcccagcgagg-atttgaatccagatactctgac----tccagcagccccgtcccagtcgc------tctggtcCCTGGCCACCGGCGAGGACCC-GGGACTGGCCTGGGCCT---GG---CATTCGTG
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       655307  99 +    730879 tagcccatcgagg-gtt---------------cgac----tccagCCGCCGCCTCGTGGCCGC------TCTGGTCcctggccacgggcaaggaccc-gggtctggcctgggcct--ggg---cACTCGTG
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5759039 118 -  36342412 tagcaccatgaag-atctgaatgcaggtgctctgactgattcaagctgctgca-cttGGCTGTGACCCCTCTGGTCTCGGGG-ACCCACAAGGCCT-------TGCCCTGGACCT--AGG-AGCTGTTGTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90171350 108 + 124595110 tagcCATGATAGGAATTTGCATCTAAGTATCCTGCC----ATC----------TCTTAGCTGACCCTTCTCTAGTTTCTGGTGATCGGCTAAAACCCTGAGTCTGCCTTGGACCT--GAA-------TGTT
i mm10.chr9                 I 150 C 0
s dasNov3.JH579681             815713 110 +   1727078 -agcacagtgagg-attggaa-ccatgcactctgac----cccagctgccttctcttggccgct-CCCTGCTGGTCGC----------CAGGGCACT-GCATCAGCCCTGGGCCC--AGGCACCGGTTGTG
i dasNov3.JH579681          C 0 C 0
e canFam3.chr3               58188322 594 +  91889043 I

a score=3523691.000000
s hg38.chr15_KI270850v1_alt      8555 243 +    430880 GTTCCCTCCCTGCAGGAAGTGTAACCGAGGGCCGGGCGGCACCGGATATCGTGCACCAGGTTCGCGTGGACGCTGGGGGGTCCTTCCTGTCCTGTGAGCTGCGGCCCCGCGCACTGCGCAAGCGGG-ATGTATCTGTGCGCCGAGACGCGCCCGCCTTCTACCCGCTGCAATACCGCAGGCGCGAGCTGCGCTTCAACCTGACCGCCAATCAGCACCTGCTGGCGCCCGGCTTTGTGAGCGAGA
s panTro5.chr15              63456218 239 +  83230942 GTTCCCTCCCTGCAGGACGTGTAACCGAGGGCCTGGCGGCACCGGATATCGTGCACCAGGTTCGCGTGGACGCTGGGGGGTCCTTCCTGTCCTGTGAGCTGCGGCCCCGCGCACTGCGCAAGCGGG-ATGTGCCTGCGCCCCGA---ACGTCC-CCTTCTACCAGCTGCAATACCGCAGGCGCGAGCTGCGCTTCAACCTGACCGCCAATCAGCACCTGCTGGCGCCCGGCTTTGTGAGCGAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23031301 243 -  99763055 GTTCTCTCCCTGCAGGACGTGCAACCGAGGGCCGGGCGGCACTGGACATCGTGCACCCGGTTCGAGTCGACGCGGGGGGCTCCTTCCTGTCCTACGAGCTGTGGCCCCGCGCACTGCGCAAGCGGG-ATGTATCTGTGCGCCGAGACGCGCCCGCCTTCTACGAGCTACAATACCGCGGGCGCGAGCTGCGCTTCAACCTGACCGCCAATCAGCACCTGCTGGCGCCCGGCTTTGTGAGCGAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2524441 242 +   2806052 GTTCCCTCCCTGCAGGACGTGTAACCGAGGGCCGGGCGGCACCGGATATCGTGCACCAGGTTCGCGTGGACGCTGGGGGGTCCTTCCTGTCCTGTGAGCTGCGGCCCCGCGCACTGCGCAAGCGGG-ATGTGTCTGCGCCCCGA-ACGTCCCCGCCTTCTACCAGCTGCAATACCGCAGGCGCGAGCTGCGCTTCAACCTGACCGCCAATCAGCACCTGCTGGCGCCCGGCTTTGTGAGCGAGA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22691736 243 - 121039945 GTTCTCTCCCTGCAGGACGTGCAACCGAGGGCCGGGCGGCACTGGACATCGTGCACCCGGTTCGCGTCGACGCGGGGGGCTCCTTCCTGTCCTACGAGCTGTGGCCCCGCGCACTGCGCAAGCGGG-ATGTGTCTGTGCGCCGAGACGCGCCCGCCTTCTACGAGCTACAATACCGCGGGCGCGAGCTGCGCTTCAACCTGACCGCCAATCAGCACCTGCTGGCGCCCGGCTTTGTGAGCGAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113287686 243 - 169600520 GTTCTCTCCCTGCAGGACGTGCAACTGAGGGCCGGGCGGCACTGGACATCGTGCACCCGGTTCGCGTTGACGCGGGGGGCTCCTTCCTGTCCTACGAGCTGTGGCCCCGCGCACTGCGCAAGCGGG-ATGTGTCTGTGCGCCGAGACGCGCCCGCCTTCTACCAGCTGCAATACCGCGGGCGCGAGCTGCGCTTCAACCTGACCGCCAATCAGCACCTGCTGGCGCCCGGCTTTGTGAGCGAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61580212 244 + 171882078 GTTCTCTCCCTGCAGGACGTGCAACCAAGGCCAGGGAGGCACTGGACATCGTGCACCAGGTTCGCGTGGACCCCTGGGGGTCCTTCCTGTCCTGTGAGCTGTGGCCCCGCACGCTGCGCAAGCGGGAATGTGTCTGTGCGCCTAGACGCGCCCTCCTTCTACCAGCTGCAATACTGCGGCTGCGAGCTGCGCTTCAACCTGACCTCCAATCAACACCTGCTGGCGCCCGGCTTTGTGAGTGAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3880108 243 +   4820037 GTTCTCTCCCTGCAGGACGTGCAACTGAGGGCCGGGCGGCACTGGACATCGTGCACCCGGTTCGCGTTGACGCGGGGGGCTCCTTCCTGTCCTACGAGCTGTGGCCCCGCGCACTGCGCAAGCGGG-ATGTGTCTGTGCGCCGAGACGCGCCCGCCTTCTACCAGCTGCAATACCGCGGGCGCGAGCTGCGCTTCAACCTGACCGCCAATCAGCACCTGCTGGCGCCCGGCTTTGTGAGCGAGA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9747544 243 +  10730278 GTTCTCTCCCTGCAGGACGTGCAACTGAGGGCCGGGCGGCACTGGACATCGTGCACCCGGTTCGCGTTGACGCGGGGGGCTCCTTCCTGTCCTACGAGCTGTGGCCCCGCGCACTGCGCAAGCGGG-ATGTGTCTGTGCGCCGAGACGCGCCCGCCTTCTACCAGCTGCAATACCGCGGGCGCGAGCTGCGCTTCAACCTGACGGCCAATCAGCACCTGCTGGCGCCCGGCTTTGTGAGCGAGA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1308325 244 +  24206276 GTTCTCTCCCTGCAGGACGTGCAACCAAGGCCAGGGCGGCACTGGACATCATGCACCAGGTTCGCGTGGACCCCTGGGGGTCCTTCCTGTCCTGTGAGCTGTGGCCCCGCACGCTGCGCAAGCGGGAATGTGTCTGTGCGCCCAGACGCGCCCTCCTTCTACCAGCTGCAATACTGCGGCTGAGAGCTGCGCTTCAACCTGACCTCCAATCAACACCTGCTGGCGCCCGGCTTTGTGAGTGAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3867616 243 +   4030761 GTTCTCTCCCTGCAGGACGTGCAACTGAGGGCCGGGCGGCACTGGACATAGTGCACCCGGTTCGCGTTGACGCGGGGGGCTCCTTCCTGTCCTACGAGCTGTGGCCCCGCGCACTGCGCAAGCGGG-ATGTGTCTGTGCGCCGAGACGCGCCCGCCTTCTACCAGCTGCAATACCGCGGGCGCGAGCTGCGCTTCAACCTGACCGCCAATCAGCACCTGCTGGCGCCCGGCTTTGTGAGCGAGA
i manLeu1.NW_012102632v1    C 0 M 1920
s colAng1.NW_012114844v1      3994611 243 +   5013933 GTTCTCTCCCTGCAGGACGTGCAACTGAGGGCCGGGCGGCACTGGACATCGTGCACCCGGTTCGCGTTGACGCCGGGGGCTCCTTCCTGTCCTACGAGCTGTGGCCCCGCGCACTGCGCAAGCGGG-ATGTGTCTGTGCGCCGAGACGCGCCCGCCTTCTACCAGCTGCAATACCGCGGGCGCGAGCTGCGCTTCAACCTGACCGCCAATCAGCACCTGCTGGCCCCCGGCTTTGTGAGCGAGA
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113720689 243 - 132174527 GTTCTCTCCCTGCAGGGCGTGCAACGGAGGGCCGGGCGGCACTGGACATCGTGCACCCGGTTCGCGTGGACGCGGGGGGCTCCTTCCTGTCCTACGAGCTGTGGCCCCGCGCACTGCGCAAGCGGG-ATCTGTCTGGGCACCGCGACGCGCCCGCCTTCTACCAGCTACAGTACCGCGGGCGTGAGCTGCTCTTCAACCTGACCGCCAATCCGCACCTGCTGGCCCCCGGCTTTGTGAGCGAGA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              48999 243 -    125141 GTTCTCTCCCTGCAGGGCGTGCAACGGAGGGCCGGGCAGCACTGGACATCGTGCACCCGGTTCGCGTGGACGCCGGGGGCTCCTTCCTGTCCTACGAGCTGTGGCCCCGCGCACTGCGCAAGCGGG-ATCTGTCCGGGCACCGCGACGCGCCCGCCTTCTACCAGCTGCAGTACCGCGGGCGCGAGCTGCGCTTCAACCTGACCGCCAATGCGCACCTGCTGGCTCCCGGCTTTGTGAGCGAGA
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        62340 243 +  11725426 GTTCTCTCCCTGCAGGGCGTGCAACGGAGGGCCGGGCGGCAGTGGACATCGTGCACCCGGTTCGCGTGGACGCGGGGGGCTCCTTCCTGTCCTACGAGCTGTGGCCCCGCGCACTGCGCAAGCGGG-ATCTGTCTGGGCACCGCGACGCGCCCGCCTTCTACCAGCTGCAGTACCGCGGGCGCGAGCTGCGCTTCAACCTGACCGCCAATGCGCACCTGCTGGCGCCCGGCTTCGTGAGCGAGA
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       655406 243 +    730879 CTTCTCTCCCTGCAGGGCGTGCAACGGAGGGCCGCGCGGCCCTGGACATCGTGCACCCGGTTCGCGTGGACGCGGGGGGCTCCTTCCTGTCCTACGAGCTGTGGCCCCGCGCGCTGCGCAAGCGGG-ATCTGTCTGGGCACCGCGACGCGCCCGCCTTCTACCAGCTGCAGTACCGCGGGCGCGAGCTGCGCTTCAACCTGACGGCCAACCCGCACCTGCTGGCGCCCGGCTTTGTGAGCGAGA
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5759157 243 -  36342412 CTTGTCTCCTTACAGGGCACTCGACCCAGGGCCGGGCGGCTTTGGATATCGTGCACCCAGTGCGCGTGGACGCGGGAGGCTCCTTCTTGTCCTACGAGCTGTGGCCCCGCACGCTGCGAAAGCGAG-ACGTGTCCACGCGCTACGACGTTCCCACCTTCTATGAGTTGCAGTACCGCGGGCGCGAGCTGCGCTTCAACCTGACCGCCAACTCTCACCTGCTGGCGCCCGGCTTTGTGAGCGAGA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90171458 243 + 124595110 ACTTTCTCTCTGCAGGTCTTGTGACTGAGGGCCGGGCGGGTTTGGACATCGTGCACCCGGTGCGAGTGGATGCTGGAGGCTCCTTCCTGTCCTATGAGCTGTGGCCACGGGTGCTGCGCAAGCGCG-ATGTGTCCACCACGCAGGCTTCGTCTGCTTTCTACCAGCTGCAGTACCAAGGGCGGGAACTGCTTTTCAACTTGACCACCAACCCTTATCTGATGGCTCCCGGCTTTGTGAGTGAGA
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58188916 243 +  91889043 GCCCTCTCCCCGCAGGCCGCGACGTGGATGGCCGCGTGGCGCTGGACGTCGTGCACCCCGTGCGCGTGGACGCGGGGGGCTCCTTCCTGTCCTATGAGCTGTGGCCGCGCGCACTGCGCAAGCGGG-ACGGGTCCGCACCCCGCGCTGCACCGACCTTCTACGAGCTGCAGTACCGCGGGCGCGAGCTGCGCTTCAACCTGACGGCCAACAGGCACCTGCTGGCGCCCGGCTACGTGAGTGAGA
i canFam3.chr3              I 594 C 0
s dasNov3.JH579681             815823 242 +   1727078 -TTTTCTCTCCTCAGAGCGTGCAGCTGAGGCCCGGGAGGCGCTGGACATCGTGCACCCCGTGCGAGTGGACGCTGGAGGCTCCTTCCTGTCCTATGACCTGTGGCCGCGTGCGCTGCGCAAGCGGG-ACTTGTCGGCTCGGCTGGATGCGCCCGCCTTCTACCAGCTGCAGTACCGCGGACGTGAACTGCGCTTCAACCTGACCACCAACCTGCACCTCCTGGCGCCTAGCTTTGTGAGCGAGA
i dasNov3.JH579681          C 0 C 0

a score=3676196.000000
s hg38.chr15_KI270850v1_alt      8798 359 +    430880 TGCCGCGGCGCGGCGCCCTGGGTCGCGCGCACATCCGGGCCCACACCCCCGCCTGCCACCTGCTTGGCGAGGTGCAGGACTCCGAGCTCGAGGGTGGCCTGGCGGCCATCAGCGCCTGCGACGGCCTGGTGAGTGAGCTGGGACATGTATACTTGGGGCAGTCTCGGGTGGTgggatg--tggagattggctctagccttgccacgcacttgtc---tggtggctttgcccagtgcactttttctctgccagcctcggtattcacgcctgtaaagtgggagtgacaacgcaggcctcgttcatctcTAGGACAACAGTTCTCAAAGTTTAATGTGAAagccgggtggtggtgcacctgtagtcc
s panTro5.chr15              63456457 359 +  83230942 TGCCGCGGCGCGGCGGCCTGGGTCGCGCGCACATCCGGGCCCACACCCCCGCCTGCCACCTGCTTGGCGAGGTGCAGGACTCCGAGCTCGAGGGTGGCCTGGCGGCCATCAGCGCCTGCGACGGCCTGGTGAGTGCGCTGGGACATGTATACTTGGGGCAGTCTCGGGTGGtgggatg--tggagattggctctagccttgccacgcacttgtc---tggtggctttgcccagtgcactttttctctgccagcctcggtattcacgcctgtaaagtgggagtgacaacgcaggcctccttcatCTCTAGGACAACAGTTCTCAAAGTTTAATGTGAAAGCTGggtggtggtgcacctgtagtcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23031544 359 -  99763055 CGCGGCGGCGCGGCGGCCTGGGCCGCGCGCACATCCGGGCCCACACCCCGACTTGCCACCTGCTTGGCGAGGTGCAGGACCCTGAGCTCGAGGGTGGCCTGGCGGCCATCAGCGCCTGCGACGGCCTGGTGAGTGCGCTGGGACATGTATACTTGGGGCAGTCTCGGGTGGTgggatg--tggagattggctctagccttgccacgcacttgtc---tggtggctttgcccagtgcactttttctctgccagcctcggtattcacgcctgtaaagtgggagtgacaacgcaggcctcgttgatctctaggACGACAGTTCTCAAAGTTTAATGTGAAAgccgggtggtggtgcacctgtagtcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2524683 359 +   2806052 TGCCGCGGCGCGGCGGCCTGGGTCGCGCGCACATCCGGGCCCACACCCCCGCCTGCCACCTGCTTGGCGAGGTGCAGGACTCCGAGCTCGAGGGTGGCCTGGCGGCCATCAGCGCCTGCGACGGCCTGGTGAGTGTGCTGGGACATGTATACTTGGGGCAGTCTCGGGTGGtgggatg--tggagattggctctagccttgccacgcacttgtc---tggtggctttgcccagtgcactttttctctgccagcctctgtattcacgcctgtaaagtgggagtgacaacgcaggcctcgttcatctcTAGGACAACAGTTCTCAAAGTTTAATGTGAAAgccgggtggtggtgcacctgtagtcc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22691979 359 - 121039945 CGCGGCGGCGCGGCGGCCTGGGTCGCACGCACATCCGGGCCCACAGCCCGGCCTGCCATCTGCTTGGCGAGGTGCAGGACCCTGAGCTCGAGGGTGGCCTGGCGGCCATCAGCGCCTGCGACGGCCTGGTGAGTGCGCTGGGACATGTATACTTGGGGCAGTCTCGGGTGGTGGgatg--tggatattggctctaaccttgccacgcacttgtc---tggtggctttgcccagtacactttttctctgccagcctcggtattcacgcctgtaaagtgggagtgacaacgcaggcctcgttgatttcTAGGACAACGGTTCTCAAAGTTTAATGTGAAAgccgggtggtggtgcacctgtagtcc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113287929 358 - 169600520 CGCGGCGGCGCGGAGGCCTGGGTCGTGCGCACATCCAGGCCCACACCCCCGCCTGCCACCTGCTTGGCGAGGTGCAGGACCCCGAGCTCGAGGGTGGCCTGGCGGCCATCAGCGCCTGCGACGGCCTGGTGAGTGCGCTGGGACATGTATACTTGGGGCAGTCTCGGGTGGTgggatg--tggagattggctccagtcttgcaatgcacttgtc---tggtggctttgcccagggcacttttcctctgccagcctcggtattcacgcctgtaaagggggagtgacaacgcaggcctcgttGATCTCTGGGACAGCACTTCTCAAAGTTTAATGTG-Aagccgggtggtggtgcacctgtagtcc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61580456 359 + 171882078 CACTGAGGCTTGGCGGCCTGGGTCGCGGGCACATCTGGGCCCACACCCCCGCCTGCCATCTGCTTGGGGAGGTGCAGGACCCCGAGCTCGAGGGTGGCCTGGCGGCCACCAGCGGCTGCAACAGCCTGTTGAGTGCACTGGGACATGTATACTCGGGGCAGTCTCGGGTGGTgggatg--tggagattggctccagcctggccacgcacttgtc---tggtggctttgcccagtgcacttttcctctgccagcctcggtattcacgcctgtaaaatgggagcgacaatgcatgcctggttgatctctaggacagcagttctcaaagtttaatgtgaaagccgggtggtggtgcacctgtagtcc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3880351 358 +   4820037 CGCGGCGGCGCGGAGGCCTGGGTCGTGCGCACATCCAGGCCCACACCCCCACCTGCCACCTGCTTGGCGAGGTGCAGGACCCCGAGCTCGAGGGTGGCCTGGCGGCCATCAGCGCCTGCGACGGCCTGGTGAGTGCGCTGGGACATGTATACTTGGGGCAGTCTCGGGTGGTgggatg--tggagattggctccagtcttgccatgcacttgtc---tggtggctttgcccagggcacttttcctctgccagcctcggtattcacgcctgtaaagggggagtgacaacgcaggcctcgttGATCTCTGGGACAGCACTTCTCAAAGTTTAATGTG-AAgccgggtggtggtgcacctgtagtcc
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9747787 358 +  10730278 CGCGGCGGCGCGGAGGCCTGGGTCGTGCGCACATCCAGGCCCACACCCCCGCCTGTCACCTGCTTGGCGAGGTGCAGGACCCCGAGCTCGAGGGTGGCCTGGCGGCTATCAGCGCCTGCGACGGCCTGGTGAGTGCGCTGGGACATGTATACTTGGGGCAGTCTCGGGTGGTgggatg--tggagattggctccagtcttgccatgcacttgtc---tggtggctttgcccagggcacttttcctctgccagcctcggtattcacgcctgtaaagggggagtgacaacgcaggcctcgttGATCTCTGGGACAGCACTTCTCAAAGTTTAATGTG-AAgccgggtggtggtgcacctgtagtcc
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1308569 359 +  24206276 CACTGAGGCTTGGCGGCCTGGGTCGCGGGCACATCTGGGCCCACACCCCCGCCTGCCATCTGCTTGGGGAGGTGCAGGACCCGGAGCTCGAGGGTGGCCTGGCGGCCACCAGCGCCTGCAACAGCCTGTTGAGTGCACTGGGACATGTATACTCGGGGCAGTCTCGGGTGGTgggatg--tggagattggctccagcctggccacgcacttgtc---tggtggctttgcccagtgcacttttcctctgccagcctcggtattcacgcctgtaaaatgggagcgacaatgcaggcctcgttgatctctaggACAGCAGTTCTCAAAGTTTAACGTGAAAGCCGggtggtagtgcacctgtagtcc
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012114844v1      3994854 359 +   5013933 CGCGGCGGCGCGGAGGCCTGGGTCGTGCGCACATCCAGGCCCACACCCCCGCCTGCCACCTGCTTGGCGAGGTGCAGGACCCTGAGCTTGAGGGTGGCCTGGCGGCCATCAGCGCCTGCGACGGCCTGGTGAGTGCGCTGGGACATGTATACTTGGGGCAGTCTCGGGTGGTgggatg--tggagattggctccagtcttgccacgcacttgtc---tggtgactttgcccagtgcacttttcctctgccagcctcggtattcacgcctgtaaagtgggagtgacaacgcaggcctcgttgatctctaggACAGCACTTCTCAAAGTTTAATGTGAAAGTCGggtggtggtgcacctgtagtcc
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113720932 359 - 132174527 CGCGGCGGCGCGGCGGCCTGGGACGCGCGCACATCCAGGCTCACAGCTCCGCCTGCCACCTGCTCGGCGAGGTGCAGGACCCGGAGCTCGAGGGTGGCCTGGCGGCCATCAGCGCCTGCTACGGCCTGGTGAGTGCGCTGGGACGTGAGTACTCGGGGCAGTCTCGCGTGGTGGGATG--TGGAGAGGGGCTTTTgccttgccacgcacttgtc---tggtggcttggcccagtgcacttctcctctgccagcctcggtattcacgcctgtaaaatgggagtgacagcgcaggccccgttgatctctaggacagcagttctgaaagtttaatatgaAAGCCGCgtggctgtgcacctgtagtcc
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              49242 359 -    125141 CGCGGCGGCGCGGCGACCTGGGTCGCGCGCACATCCAGGCCCACACCCCCGCCTGCCACCTGCTGGGCGAGGTGCAAGACCCCGAGCTCGAGGGTGGCCTGGCGGCCATCAGTGCCTGCGACGGCCTGGTGAGTGTGCTGAGACGCGGGTACTCGGGGCGGTCTCGCGTGGTGAAATG--TGCAGAGgggctctcgccttgccacgcactcgtc---cggtggctttgcccagcgcacttctcctctgccagcctcggtattcacgcctgtaaaatgggagtgacagcccaggccccgttgatctcTAGGACAGCAGGTCTGAAAGCTTAACGTGAAAGCCACgtggcggtgcacctgtagtcc
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        62583 359 +  11725426 CGCGGCGGCGCGGCGACCTGGGTCGCGCGCACATCCAGGCCCACGCCCCCGCCTGCCACCTGCTCGGCGAGGTGCAGGACCCCGAGCTCGAGGGTGGCCTGGCGGCCATCAGCGCCTGCGACGGCCTGGTGAGTGCGCTGGAACGCGGGTGCTCCGGGAGGCCTCGCGTGGTGGGATG--TGGAGAGgggctctcgccttgccacacacttgtc---cggtggctttgcccagcgcacttctcctccgccagcctcggtattgacacctgtaaaatgggagtgacagcgcaggccccgttgatctctaggacagcaggtctgacagtttaATGTGAAAGCCGCgtggctgtgcacctgtagtcc
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       655649 332 +    730879 CGCGGCGGCGCGGCGGCCTGGGGCGCGCGCACATCCAGGCCCACAGCCCCGCCTGCCACCTGCTCGGCGAGGTGCAGGACCCCGAGCTCGAGGGTGGCCTGGCGGCCATCAGCGCCTGCGACGGCCTGGTGAGTGCGCTGGGACGTGGGTGCTCGGGGCAGTCTCGCGC-GTGGGGTG--TGGAGAGGGGCTCTCGCCTTGCCACGCCcttg-----------------------------tcctctgccagcctcgggattcacgcctgtaagatgggggtgaccgcgcaggccccgttggcctctaggacagcagttctgagagtttaacgtgaAAGCCGCgtggcggtgcacctgcagtcc
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5759400 258 -  36342412 CGCGGCGGCGCGGAGGCCTGGGCCGAGCGCACATCCGGGCCCGCACCTCTGCCTGCCACCTGCTCGGGGAAGTGCAGGATCCGGAGCTCGAGGGCGGCCTGGCGGCCATCAGTGCCTGTGATGGCCTGGTGAGTGCGCCTGGA-GGGTGCGCAGGCAGGGGTGGGGGGTGGCAGGATG-------GTGGCCACTAGCCTTGC----------------------------CTGTGTGCTTGTCCTCTGCCCATCTGGGTATTATCTCCTATAAAATGGGAGTGATCCCGTAGGC----------------------------------------------------------------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90171701 315 + 124595110 TTCGACGTCACAGCACTTTAGGCCATGCGCACATCCAAACCAGTGTCCCAACCTGCCATTTGCTTGGTGATGTCCAGGACCCGGAGCTGGAAGGAGGCTTTGCAGCCATTAGCGCCTGCGATGGCCTAGTGAGTTTTCTGGGA----TGCTCGTGGGGAGGGCTGGGGT--TGGTGTA--ACAACATTGACTC-----------------TGTC---TGATGGCTTTGCTCAGTATACCTTTCCTGTGTCA-CCTCTGTGTTCATAAAGG--AGACAGAAATGACAGTGTAGACTTCCTTGTTCTGAAGGACAGAAAACTGGAAGGTTT-----------------TCGGTGCTCCAG-AATcc
i mm10.chr9                 C 0 I 122
s canFam3.chr3               58189159 222 +  91889043 CGCGGCGGCGCGGCGACCTGGGGAGCACACACATCCATGCCCAGGCGCCCGCCTGCCACCTGCTCGGCGAGGTGCAGGACCCGGAGCTGGAGGGCGGCCTGGCGGCCATCAGCGCCTGCGACGGGCTGGTGAGTGCCCCG---------CACCCCAGG-GGACTCACGGAGCGGGGTG--GGGGG-------------------TGCAGCTGTA---CGGTGG---------------------------------GGGGTTCCTGTC-----------------------------------CCCCAGGGTGGCAGTCTTCGA----------------------------------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             816065 317 +   1727078 CGCGGCGGCGTGGTGGCCTGAGCCGCGCGTACATCAGGACTGGCACCCCCGCCTGCCACCTGCTCGGCGAGGTGCAGGACCCGGAGCTGGAGGGCGGCCTGGCGGCCATCAGCGCCTGCAATGGCCTAGTGAGTGTGTGAGGGCATGAATGAGGGGGGC------------TGGGATGGCTGGACACAGGTCC--GCCTTGCCGGAGACTTGTCCAGTGGTGGCTCTGGTCAGTGCTTTCCTTCTCTG--GGCCTTGGTATTCACTCCTTTAAAATGGGAGTGTCCATGCAGGCCTTGTC---CTCTGGGCcagtggatctcaaactttaatgtga----------------------------
i dasNov3.JH579681          C 0 C 0
e manLeu1.NW_012102632v1      3867859 1920 +   4030761 M

a score=187748.000000
s hg38.chr15_KI270850v1_alt      9157 22 +    430880 cagctatttgggaggctgaggc
s panTro5.chr15              63456816 22 +  83230942 cagctatttgggaggctgaggc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23031903 22 -  99763055 cagctatttgggaggctgaggc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2525042 22 +   2806052 cagctatttgggaggctgaggc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22692338 22 - 121039945 cagctatttgggaggctgaggc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113288287 22 - 169600520 cagctacttgggaggctgaggc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61580815 22 + 171882078 cacttattcggaaggctgaggc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3880709 22 +   4820037 cagctacttgggaggctgaggc
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9748145 22 +  10730278 cagctacttgggaggctgaggc
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1308928 22 +  24206276 cacttatttggaaggctgaggc
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012114844v1      3995213 22 +   5013933 cagctacttgggaggctgaggc
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113721291 15 - 132174527 cagctatttgggagg-------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              49601 22 -    125141 cagctatttgggaggctgaggc
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        62942 22 +  11725426 cagctatttgggaggctgagga
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       655981 22 +    730879 cagctacttgggaggctgaggc
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5759658 16 -  36342412 ------TTTGGTAGATTGCagc
i otoGar3.GL873530          C 0 C 0
e mm10.chr9                  90172016 122 + 124595110 I
e dasNov3.JH579681             816382  0 +   1727078 C
e canFam3.chr3               58189381  0 +  91889043 C
e manLeu1.NW_012102632v1      3867859 1920 +   4030761 M

a score=63668.000000
s hg38.chr15_KI270850v1_alt      9179 11 +    430880 gaaaggatcac
s panTro5.chr15              63456838 11 +  83230942 gaaaggatcac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23031925 11 -  99763055 gaaaggatcac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2525064 11 +   2806052 taaaggatcac
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22692360 11 - 121039945 gaaaggatcac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113288309 11 - 169600520 gaaaggatcgc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61580837 11 + 171882078 caaaggatcac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3880731 11 +   4820037 gaaaggatcac
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9748167 11 +  10730278 gaaaggatcac
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1308950 11 +  24206276 caaaggatcac
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012114844v1      3995235 11 +   5013933 caaaggatcac
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              49623 10 -    125141 g-aaggatcac
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        62964 10 +  11725426 g-aaggatcac
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       656003 10 +    730879 g-aaggaccac
i aotNan1.NW_018503093v1    C 0 C 0
s canFam3.chr3               58189381  2 +  91889043 ---------AC
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             816382  5 +   1727078 ------gtcac
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90172016 122 + 124595110 I
e calJac3.chr10             113721306  0 - 132174527 C
e otoGar3.GL873530            5759674  0 -  36342412 C
e manLeu1.NW_012102632v1      3867859 1920 +   4030761 M

a score=489453.000000
s hg38.chr15_KI270850v1_alt      9190 104 +    430880 ttgagcccaggagttaa-------aggatgtaggacgtagggtgtgatcatggcgcttagctggagacacag-cgagaccccaggcactaaaaaaaaaaaaa-aaaaagaaag
s panTro5.chr15              63456849  95 +  83230942 ttgagcccaggagttaa-------aggatgtaggacgtagggtgtgatcatggcgcttagctggagacacag-cgagaccccaggcactaaaaaaaaaa----------aaag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23031936  91 -  99763055 ttgagcccaggaattca-------aggat-------gtagggtgtgatgattgcgcttagctggcgacacag-cgagaccccaggcactctacaaaaaaaaa-------aaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2525075  95 +   2806052 ttgagcccaggagttaa-------aggatgtaggacgtagggtgtgatcatggcgcttagctggagacacag-ccagaccccaggcactaaaaaaaaaa----------aaag
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22692371  98 - 121039945 ttgagcccaggagttca-------aggat-------gtagggtgtgatgattgcgcttagctggagacacag-ccagaccctaggcactctcaaaaaaagaaaaaaaaaaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113288320  83 - 169600520 ttgagcccaggagttca-------aggat-------gtagggtgtgatgatagagcttagctggtgatacag-ccagaccctaggcactaaaaaagaa---------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61580848 104 + 171882078 ttgagcccaggagttcaaggatgtaggat-------gtagggtgtaatgatggcgctcagttggagacacag-cgagaccccagacactcaaaaaaaaaaaa-aaaaaaaaTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3880742  86 +   4820037 ttgagcccaggagttca-------aggat-------gtagggtgtgatgatagagcttagctggtgatacag-ccagaccctaggcactaaaaaagaagaa------------
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9748178  86 +  10730278 ttgagcccaggagttca-------aggat-------gtagggtgtgatgatagagcttagctggtgatacag-ccagaccctgggcactaaaaaagaagaa------------
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1308961 101 +  24206276 ttgagcccaggagttcaaggatgtaggat-------gtagggtgtgatgatggcgctcagttggagacacag-cgagaccccaggcactcaaaaaaaaaaaa-aaaaatg---
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012114844v1      3995246  86 +   5013933 ttgagcccacgagttca-------aggat-------gtagggtgtgatgatagagcttaactggtgatacag-ccagaccctaggcactgaaaaagaaaaa------------
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113721306  92 - 132174527 ------ccaggagttgg-------aggat-------GTAAGGTGTGACGATTGCACTTCGCTGGAGACACAGTTGAGACCCCAGGCACTCTCAAaataataataatagtaat-
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              49633  97 -    125141 ttgagtccaggagttcc-------aggat-------gtggggtgtgaccattgcgcttcactggagacacag-tgagaccccaggcactctcaaaaaaaaaaaaaaaaaaaa-
i saiBol1.JH378378          C 0 I 324
s cebCap1.NW_016107334v1        62974  97 +  11725426 ttgaatccgggagttcg-------aggat-------gtaggatgtgacgatggcgcttccctggagacacag-tgagaccccaggcactctcaaaaaaaaaaaaaaataata-
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       656013  92 +    730879 ttgagctcaggagttcg-------aggat-------gtagggtgtgacgattgcgcttcgctggagacacag-tgagaccccaggcactcccaaaaaaaaaaaaaaa------
i aotNan1.NW_018503093v1    C 0 C 0
s canFam3.chr3               58189383  16 +  91889043 TTGAG-CCAGAAGCACG------------------------------------------------------------------------------------------------
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90172016 122 + 124595110 I
e dasNov3.JH579681             816387   0 +   1727078 C
e otoGar3.GL873530            5759674   0 -  36342412 C
e manLeu1.NW_012102632v1      3867859 1920 +   4030761 M

a score=39567.000000
s hg38.chr15_KI270850v1_alt      9294 26 +    430880 aaagaaAGAGAAAAGAAAAGAaaag-t
s panTro5.chr15              63456944 26 +  83230942 aaagaaagagaaaaGAAAAGAaaag-t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23032027 26 -  99763055 aaagaaaaaaaagaaagaaaaaaag-t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2525170 26 +   2806052 aaagaaagagaaaaGAAAAGAaaag-t
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22692469 26 - 121039945 aaagaaaaagaaaaagaaaaaaaag-t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113288403 22 - 169600520 gaagaagaagaaaaaaaaaGA-----t
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61580952 26 + 171882078 AAAGAAAGAGAAAAGAAAAGAaaag-t
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3880828 22 +   4820037 gaagaagaagaaaaaaaaaGA-----t
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9748264 27 +  10730278 gaagaagaaGAAGAAAAAAAAAAAGAt
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1309062 26 +  24206276 aaagaaagagaaaAGAAAAGATAAG-T
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012114844v1      3995332 12 +   5013933 ----------aaaaaaaaaaa-----a
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113721398  2 - 132174527 -----------------aa--------
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107334v1        63071  1 +  11725426 ------------------a--------
i cebCap1.NW_016107334v1    C 0 C 0
e aotNan1.NW_018503093v1       656105  0 +    730879 C
e mm10.chr9                  90172016 122 + 124595110 I
e dasNov3.JH579681             816387  0 +   1727078 C
e canFam3.chr3               58189399  0 +  91889043 C
e otoGar3.GL873530            5759674  0 -  36342412 C
e manLeu1.NW_012102632v1      3867859 1920 +   4030761 M
e saiBol1.JH378378              49730 324 -    125141 I

a score=111936.000000
s hg38.chr15_KI270850v1_alt      9320 14 +    430880 ttaatatgagctca
s panTro5.chr15              63456970 14 +  83230942 ttaatatgagctca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23032053 14 -  99763055 ttaatatgagctca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2525196 14 +   2806052 ttaatatgagctca
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22692495 14 - 121039945 ttaatatgagctca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113288425 14 - 169600520 ttactatgagctca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61580978 14 + 171882078 ttactatgagctca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3880850 14 +   4820037 ttactatgagctca
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9748291 14 +  10730278 ttactatgagctca
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1309088 14 +  24206276 TTACTATAAGCTca
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012114844v1      3995344 14 +   5013933 GTACTATGAGCTca
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113721400 13 - 132174527 -taatGTGAGCTCA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              50054 14 -    125141 ttaatgtgagttca
i saiBol1.JH378378          I 324 C 0
s cebCap1.NW_016107334v1        63072 13 +  11725426 -taaTGTGAGCTca
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       656105 14 +    730879 ttaatgtgagctca
i aotNan1.NW_018503093v1    C 0 C 0
e mm10.chr9                  90172016 122 + 124595110 I
e dasNov3.JH579681             816387  0 +   1727078 C
e canFam3.chr3               58189399  0 +  91889043 C
e otoGar3.GL873530            5759674  0 -  36342412 C
e manLeu1.NW_012102632v1      3867859 1920 +   4030761 M

a score=279124.000000
s hg38.chr15_KI270850v1_alt      9334 29 +    430880 aat--cacctgcaggccctgtttaaacagaa
s panTro5.chr15              63456984 29 +  83230942 aat--cacctgcaggccctgtttaaacagaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23032067 29 -  99763055 aat--cactttcaggccctgtttaaacagaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2525210 29 +   2806052 aat--cacctgcaggccctgtttaaacagaa
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22692509 29 - 121039945 aat--cacctgcaggccctgtttaaacagaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113288439 29 - 169600520 aat--cacctgcaggccctgtttaaacagaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61580992 29 + 171882078 aat--cacctgcaggccctgtttaaacagaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3880864 29 +   4820037 aat--cacctgcaggccctgtttaaacagaa
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9748305 29 +  10730278 aat--cacctgcaggccctgtttaaacagaa
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1309102 29 +  24206276 aat--cacctgcagtccctgtttaaacagaa
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012114844v1      3995358 29 +   5013933 aat--cacctgcaggccctgtttaaacagaa
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113721413 31 - 132174527 AATACAGCCTGCAGGCCCTGTTTAAACAGAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              50068 29 -    125141 aat--cacctgcaggccctgtttaaacaaaa
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        63085 29 +  11725426 aat--cacctgcaggccctgtttaaacagaa
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       656119 29 +    730879 aat--cacctgcaggccctgtttaaacagaa
i aotNan1.NW_018503093v1    C 0 C 0
s canFam3.chr3               58189399 15 +  91889043 ----------------CTTGTTAACACTGTG
i canFam3.chr3              C 0 I 1
s dasNov3.JH579681             816387 28 +   1727078 aat--cacctgcaggacttgttaaaatagt-
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90172016 122 + 124595110 I
e otoGar3.GL873530            5759674  0 -  36342412 C
e manLeu1.NW_012102632v1      3867859 1920 +   4030761 M

a score=5594.000000
s hg38.chr15_KI270850v1_alt      9363 2 +    430880 tt
s panTro5.chr15              63457013 2 +  83230942 tt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23032096 2 -  99763055 tt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2525239 2 +   2806052 tt
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22692538 2 - 121039945 tt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113288468 2 - 169600520 tg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61581021 2 + 171882078 tg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3880893 2 +   4820037 tg
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9748334 2 +  10730278 tg
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1309131 2 +  24206276 tg
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012114844v1      3995387 2 +   5013933 tg
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113721444 2 - 132174527 TT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              50097 2 -    125141 tt
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        63114 2 +  11725426 tt
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       656148 2 +    730879 tt
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5759674 2 -  36342412 tt
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58189415 1 +  91889043 T-
i canFam3.chr3              I 1 C 0
s dasNov3.JH579681             816415 2 +   1727078 tt
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90172016 122 + 124595110 I
e manLeu1.NW_012102632v1      3867859 1920 +   4030761 M

a score=133809.000000
s hg38.chr15_KI270850v1_alt      9365 13 +    430880 tttgcagggtagg
s panTro5.chr15              63457015 13 +  83230942 tttgcaggatagg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23032098 13 -  99763055 tttgcaggatagg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2525241 13 +   2806052 tttgcagggtagg
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22692540 13 - 121039945 tttgcaggatagg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113288470 13 - 169600520 tttgcagggtagg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61581023 13 + 171882078 tttgcagggtagg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3880895 13 +   4820037 tttgcagggtagg
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9748336 13 +  10730278 tttgcagggtagg
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1309133 13 +  24206276 tttgcagggtagg
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012114844v1      3995389 13 +   5013933 tttgcagggtagg
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113721446 13 - 132174527 TTTGCAGGGAAGG
i calJac3.chr10             C 0 M 1066
s saiBol1.JH378378              50099 13 -    125141 tttgcagggaagg
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        63116 13 +  11725426 tttgcagggaagg
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       656150 13 +    730879 tttgcagggaagg
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5759676 13 -  36342412 ttgacagggtatt
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90172138 13 + 124595110 tttgtttgtttgt
i mm10.chr9                 I 122 C 0
s canFam3.chr3               58189416  8 +  91889043 -----AGGATGGG
i canFam3.chr3              C 0 I 5
s dasNov3.JH579681             816417 13 +   1727078 ctgatagggaagg
i dasNov3.JH579681          C 0 C 0
e manLeu1.NW_012102632v1      3867859 1920 +   4030761 M

a score=683732.000000
s hg38.chr15_KI270850v1_alt      9378 72 +    430880 tctggaatggcgcccaaacacttggatttctgaaaacgtctcaggtaatattgaagatgcaggtccagagat
s panTro5.chr15              63457028 72 +  83230942 tctgggatggcgcccaaacacttggatttctgaaaacatctcaggtaatattgaagatgcaggtccagagat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23032111 72 -  99763055 tctgggatggcgcccaaacacttggatttctgaaaacatctcaggtaatattgaagatgcaggtccagagat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2525254 72 +   2806052 tctggaatggcgcccaaacacttggatttctgaaaacgtctcaggtaatattgaagatgcaggtccagagat
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22692553 72 - 121039945 tctgggatagcgcccaaacacttggatttctgaaaacgtctcaggtaatattgaagatgcaggtccagagat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113288483 72 - 169600520 tctggggtggcgcccaaacacttggatttctgaaaccgtctcaggtaatattgaagatgcaggtccagagat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61581036 72 + 171882078 tctggggtggcacccaaacacttggatttctgaaaccatctcaggtaatgttgaagatgcaggtccagagat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3880908 72 +   4820037 tctggggtggcgcccaaacacttggatttctgaaaccgtctcaggtaatattgaagatgcaggtccagagat
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9748349 72 +  10730278 tctggggtggcgcccaaacacttggatttctgaaaccgtctcaggtaatattgaagaggcaggcccagagat
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1309146 72 +  24206276 tctggggtggcacccaaacacttggatttctgaaaccatctcaggtaatgttgaagatgcaggtccagagat
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012114844v1      3995402 71 +   5013933 tctggggtggcg-ccaaacacttggatttctgaaaccgtctcaggtaatattgaagatgcaggtccagagat
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              50112 72 -    125141 tctgggacggcacccaaacacttacatttctgaaaacctcacaggtaatatcgaagatccaggtccagagat
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        63129 72 +  11725426 tctgggatggcgcccaaacacttatatctctgaaaacctcgcaggtaatattgaaggtccaggtccagagac
i cebCap1.NW_016107334v1    C 0 I 1
s aotNan1.NW_018503093v1       656163 72 +    730879 tctgggatggcgcccagacacttatatttttgaaaacctcgcaggtaatattgaagatccaggtccagagac
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5759689 72 -  36342412 cctgggttagtgcccaaacacttggatttctgaaaaatttccaggtaacactaaagctgcaggtccagagat
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90172151 66 + 124595110 ttTGGGAT------CCAATTCTTGAAGTTCTGAAAATGTCCTGGGTAGGAAGGAAGCTGCTACCCCAGAGAC
i mm10.chr9                 C 0 I 16
s canFam3.chr3               58189429 61 +  91889043 -------TGATGCTCCCAGGCCAGCATCTCTGAGCGTTTCCCAG----TGTGGAAGTTGCAGGTGCAGAGAG
i canFam3.chr3              I 5 C 0
s dasNov3.JH579681             816430 72 +   1727078 tctggagtggcacctgaaaatgcacctttcttacaatttcctagggaaggccaatgctgcaggtccagagac
i dasNov3.JH579681          C 0 C 0
e calJac3.chr10             113721459 1066 - 132174527 M
e manLeu1.NW_012102632v1      3867859 1920 +   4030761 M

a score=846538.000000
s hg38.chr15_KI270850v1_alt      9450 92 +    430880 cccattttgagaacctctgTTTGACTGGACTAAGTAACTGAAAAAGCAGTTGACTT-CTCTTCCT-TGGG--GCATCAGTTATGACTGTTCCTTCA--
s panTro5.chr15              63457100 92 +  83230942 cccattttgagaaccTCCGTTTGACTGGACTAAGTAACTGAAAAAGCAGTTGACTT-CTCTTCCT-TGGG--GCATCAGTTATGACTGTTCCTTCA--
i panTro5.chr15             C 0 N 0
s panPan2.chr15              23032183 92 -  99763055 cccattttgagaaccTCCGTTTGACTGGACTAAGTAACTGAAAAAGCAGTTGACTT-CTCTTCCT-TGGG--GCATCAGTTATGACTGTTCCTTCA--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2525326 92 +   2806052 cccattttgagaacctctgTCTGACTGGACTAAGTAACTGAAAAAGCAGTTGACTT-CTCTTCCT-TGGG--GCATCAGTTATGACTGTTCCTTCA--
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22692625 92 - 121039945 cccattttgagaaccTCCGTTTGACTGGACTAAGTAACTGAAAAAGCAGTTGACTT-CTCTTCCT-TGGG--GCATCAGTTATGACTGTTCCTTCA--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113288555 92 - 169600520 cccactttgagaaacTCTCTTTGACTGGACTAAGTAACCGAAAAAGCAATTGGCTT-CTCTTCCC-TGGG--GCATCAGTTATGACTGTTCCTTCA--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61581108 92 + 171882078 cccactttgagaacctctgTTTGACTGGACTAAGTAACTGAAAAAGCAGTTGGCTT-CTCTTCCC-TGGG--GCATCAGTTGTGACTGTTCCTTCA--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3880980 92 +   4820037 cccactttgagaaacTCTCTTTGACTGGACTAAGTAACCGAAAAAGCAGTTGGCTT-CTCTTCCC-TGGG--GCATCAGTTATGACTGTTCCTTCA--
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9748421 92 +  10730278 cccactttgagaaacTCTCTTTGACTGGACTAAGTAACCGAAAAAGCAATTGGCTT-CTCTTCCC-TGGG--GCATCAGTTATGACTGTTCCTTCA--
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1309218 92 +  24206276 cccactttgagaacctctCTTTGACTGGACTAAGTAACCGAAAAAGCAGTTGGCTT-CTCTTCCC-TGGG--GCATCAGTTGTGACTGTTCCTTCA--
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012114844v1      3995473 92 +   5013933 cccacttggagaacctctgTTTGACTGGACTAAGTAACTGAAAAAGCAGTTGGCTT-CTCTTCCC-TGCG--GCATCAGTTATAACTGTTCCTTCA--
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113722561 93 - 132174527 CCCACTTTGAGAAGATCTGTTTGACTGGACTAAGCAACTGAAAAAGCAGTTGATTT-CTCTTTTTGGGGG--GCATCTGTTATGACTGTTCCTTGA--
i calJac3.chr10             M 1066 C 0
s saiBol1.JH378378              50184 92 -    125141 gtcactttgagaagcTCTGTTTAACCGGACTAAGCAACTGAAAAAGCAGTGGCTTT-CTCTTTTT-TGGG--ACATCAGTTATGACTGTTCTTTCA--
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        63202 92 +  11725426 cccactttgagaagctctgTTTGACTGGACTAAGCAACTGAAAAAGCGGTTGATTT-CTCTTTTG-TGGG--GCATCAGTTATGACTGTTCCTTGA--
i cebCap1.NW_016107334v1    I 1 C 0
s aotNan1.NW_018503093v1       656235 92 +    730879 cccgcttcgagaagcTCTGTTTGACTGGACTAAGCAACTGAAAAAGCAGTTGATTT-CTCTTTTT-TGAG--GCATCAATTACGACTGTTCCTTGA--
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5759761 81 -  36342412 cccactc--agaactgctgTTT----GGACTAAGTAACTTGGAGA-TAGTTGAGCC-CCTTCCTT-TAGG--GTGTCAG----GACCATTCCTTCA--
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90172233 81 + 124595110 CCCCCATGGAAAGAGTTTGC------------AGAGGCTAAATAAGCCGTTGGCTC-CTTTTCCCCTGGG--GTGCCAGTTAGGAGTGATTTTCTG--
i mm10.chr9                 I 16 I 4
s canFam3.chr3               58189490 78 +  91889043 GGCTCTTTGAGAATCACCCTGT----AGACCAGGTCACTCCTAACACAGCGCAGCT-GTCCGTCC-TGGGGAGCGTGGGTTATG--------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             816502 80 +   1727078 gccacttttaga----------------cctaAGAAACTGAGAAAGGAGCCAACCTGCTCTTTCTTTGGG--GCATCAGTTATGACTTTTACCTCCTG
i dasNov3.JH579681          C 0 C 0
e manLeu1.NW_012102632v1      3867859 1920 +   4030761 M

a score=4261422.000000
s hg38.chr15_KI270850v1_alt      9542 462 +    430880 CAGGTCCCTTTAGGCT---GCTTTTC--TCCAGGAAAGCCACCCCTCACCCTGTAGCCATTCTGCAGGGTGTGGTGAGGAACCCCTTTCAGCC--C--CTCTGCTCGGATCAGAGCTCCGGGAAAAGCAGGCCTCAGCTTCCTGGTTTCGACTGGCTGAAGGGTGGTGCTGGCTA-CTGC----AGCCCTAATTGCT---CCCTGATTGGGT-GCTGATTAGAGCAG--CTTCCACTCCAGGCAGAGTAGGGCCCCTTTCTGTTC-GTGTTCAGGTG--ACCAGCCCCACTCTCCCAGCTCTGGAGGGTGGGGGTTTGGGAGGAGTAGGGGATG-----------TGTGCACACTCTCAG---------CGTCCACTGTTCC------CAGGA-GGCCCTCAGCTTAGATTGCTCAGGCAAAAACCATGGGCTGTGGCCGCACAGGGCCTAATGACAGGGCAGCCCACAACGCAAGCTGCACAACGTCTGGACCTTTGAAGGCCCATCTGCC
s panTro5.chr15              23335183 466 -  83230942 CAGGTCCCTTTAGGCT---GCTTTTC--TCCAGGAAAGCCACCCCTCACCCTGTAGCCATTATGCAGGGTGTGGTGAGGAACCCCTTTCAGCC--C--CTCTGCTCGAATCAGAACTCCGGGAAAAGCAGGCCTCAGCTTCCTGGCTTCGCCTGGCTGAAGGGTGGTGCTGGCTA-CTGCCTGCAGCCCTAATTGCT---CCCTGATTGGGT-GCTGATTAGAGCAG--CTTCCACTCCAGGCAGAGTAGGGCCCCTTTCTGTTC-GTGTTCAGGTG--ACCAGCCCCACTCTCCTAGCTCTGGAGGGTGGAGGTTTGGGAGGAGTAGGGGATG-----------TGTGCACACTCTCAG---------CATCCACTGTTCT------CAGGA-GGCCCTCAGCTTAGATTGCTCAGGCAAAAACCATGGGCTGTGGCCGCACAGGGCTTAATGACAGGGCAGCCCACAACACAAGCTGCACAACGTCTGGACCTTTGAAGGCCCATCTGCC
i panTro5.chr15             N 0 C 0
s panPan2.chr15              23032275 466 -  99763055 CAGGTCCCTTTAGGCT---GCTTTTC--TCCAGGAAAGCCACCCCTCACCCTGTAGCCATTATGCAGGGTGTGGTGAGGAACCCCTTTCAGCC--C--CTCTGCTCGAATCAGAACTCCGGGAAAAGCAGGCCTCAGCTTCCTGGCTTCGCCTGGCTGAAGGGTGGTGCTGGCTA-CTGCCTGCAGCCCTAATTGCT---CCCTGATTGGGT-GCTGATTAGAGCAG--CTTCCACTCCAGGCAGAGTAGGGCCCCTTTCTGTTC-GTGTTCAGGTG--ACCAGCCCCACTCTCCTAGCTCTGGAGGGTGGAGGTTTGGGAGGAGTAGGGGATG-----------TGTGCACACTCTCAG---------CATCCACTGTTCC------CAGGA-GGCCCTCAGCTTAGATTGCTCAGGCAAAAACCATGGGCTGTGGCCGCACAGGGCTTAATGACAGGGCAGCCCACAACACAAGCTGCACAACGTCTGGACCTTTGAAGGCCCATCTGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2525418 462 +   2806052 CAGGTCCCTTTAGGCT---GCTTTTC--TCCAGGAAAGCCACCCCTCACCCTGTAGCCATTCTGCAGGGTGTGATGAGGAACCCCTTTCAGCC--C--CTCTGCTCGGATCAGAGCTCCGGGAAAAGCAGGCCTCAGCTTCCTGGTTTCGACTGGCTGAAGGGTGGTGCTGGCTA-CTGC----AGCCCTAATTGCT---CCCTGATTGGGT-GCTGATTAGAGCAG--CTTCCACTCCAGGCAGAGTAGGGCGCCTTTCTGTTC-GTGTTCAGGTG--ACCAGCCCCACTCTCCTAGCTCTGGAGGGTGGGGGTTTGGGAGGAGTAGGGGATG-----------TGTGCACACTCTCAG---------CGTCCACTGTTCC------CAGGA-GGCCCTCAGCTTAGATTGCTCAGGCAAAAACCATGGGCTGTGGCCGCACAGGGCCTAATGACAGGGCAGCCCACAATGCAAGCTGCACAACGTCTGGACCTTTGAAGGCCCATCTGCC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22692717 466 - 121039945 TAGGTCCCTTTAGGCT---GCTCTTC--TCCAGGAAAGCCACCCCTCACCCTGTAGCCATTCTGCAGGGTGTGGTGAGGAACCCCTTTCAGCC--C--CTCTGCTCGGATCGGAACTCCGGGAAAAGCAGGCCTCAGCTTCCTGGCTTCCTCTGGCTGAAGGGTGGTGCTGGCTA-CTGCCTGCAGCCCTAATTGCT---CCCTGATTGGGT-GCTGATTAGAGCAG--CTTCCACTCCAGGCAGAGTAGGGCCCCTTTCTCTTC-GTGTTCAGGTG--ACCAGCCCCACTCTCCCAGCTCTGGAGGGTGGGGGTTTGAGAGGAGTAGGGTATG-----------TGTGCACACTCTCAG---------CGTCCACTGTTCC------CAGGA-GGCCCTCAGCTTAGATTGCTCAGGCAAAAACCATGGGCTGTGGCCGCACAGGGCCTAATGACAGGGCAGCCCACAACACAAGCTGCACAACGTCTGGACCTTTGAAGGCCCATCTGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113288647 465 - 169600520 CAGGTCCCTTTAGGCT---GCTCTTC--TCCAGGAAAGCCACCCCTCACCCTGTAGCCATTCTGCAGGGTGTGGTGAGGAACCGCTTTCAGCC--C--CTCTGCCCCGATCAGCGTTCCAGGAAAAGCAGGCCTCAGCTTCCTGGCTTCGTCTGGCTGAAGGGTGGTGCTGGCTA-CTGCCTGCAGCCCTAATGGCT---CCCTGACTGGG--GCTGATTAGAGCAG--CTTCCACTCCAGGCGGGGCAGGGCCCCTTTCTGTTC-GTGTTCAGGTG--ACCAGCCCCATTCTCTCAGCTCTGGAGGGTGGGGGTTTGGGAGGAGTAGGGGATG-----------TGTGCACACTCTCAG---------CGTCCACTGTTCC------CAGGA-GGCCCTCAGCTTAGATTGCTCAGGCAAAAACCATGGGCTGTGGCTGCACAGGGCCTAATGACAGGGCAGCCCACAACATAAGCTGCACAACAACTGGACCTTTGAAGGCCCATCTGCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61581200 464 + 171882078 CAGGTCCCTTTAGGCT---GCTCTTC--TCCAGGAAAGCCACCCCTCACCCTGTAGCCATTCTGCAGGGTGTGGTGAGGAACCGCTTTCAGCC--C--CTCTGCCCGGATCAGCGTTCCGGGAAAAGCAGGCCTCAGCTTCCTGGCTTGGTCTGGCTGAAGGGTGGTGCTGGCTA-CTGCCTGCAGCCCTAATGGCT---CCCTGACTGGG--GCTGATTAGAGCAG--CTTCCACTCCAGGCAGAGCAGGGCCCCTTTCTGTTT-GTGTTCAGGTG--ACCAGCCCCACTCTCCCAGCTCTGGAGGGTGGGGGTTTGGGAGGAGTAGGGGATG-----------TGTGCACACTCTCAG---------CGTCCACTGTTCC------CAGGA-GGCCCTCAGCTTAGATTGCTCAGGCAAAAACCGTGGGCTGTGGCTGCACAGGGCCTAATGACAGGGCAGCCCA-AATACAAGCTGCACAACATCTGGACCTTTGAAGGCCCATCTGCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3881072 465 +   4820037 CAGGTCCCTTTAGGCT---GCTCTTC--TCCAGGAAAGCCACCCCTCACCCTGTAGCCATTCTGCAGGGTGTGGTGAGGAACCCCTTTCAGCC--C--CTCTGCCCCCATCAGCGTTCCAGGAAAAGCAGGCCTCAGCTTCCTGGCTTCGTCTGGCTGAAGGGTGGTGCTGGCTA-CTGCCTGCAGCCCTAATGGCT---CCCTGACTGGG--GCTGATTAGAGCAG--CTTCCACTCCAGGCGGGGCAGGGCCCCTTTCTGTTC-GTGTTCAGGTG--ACCAGCCCCATTCTCCCAGCTCTGGAGGGTGGGGGTTTCGGAGGAGTAGGGGATG-----------TGTGCACACTCTCAG---------CGTCCACTGTTCC------CAGGA-GGCCCTCAGCTTAGATTGCTCAGGCAAAAACCATGGGCTGTGGCTGCACAGGGCCTAATGACAGGGCAGCCCACAACATAAGCTGCACAACAACTGGACCTTTGAAGGCCCATCTGCC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9748513 465 +  10730278 CAGGTCCCTTTAGGCT---GCTCTTC--TCCAGGAAAGCCACCCCTCACCCTGTAGCCATTCTGCAGGGTGTGGTGAGGAACCCCTTTCAGCC--C--CTCTGCCCCGATCAGCGTTCTGGGAAAAGCAGGCCTCAGCTTCCTGGCTTCGTCTGGCTGAAGGGTGGTGCTGGCTA-CTGCCTGCAGCCCTAATGGCT---CCCTGGCTGGG--GCTGATTAGAGCAG--CTTCCACTCCAGGCGGAGCAGGGCCCCTTTCTGTTC-GTGTTCAGGTG--ACCAGCCCCACTCTCCCAGCTCTGGAGGGTGGGAGTTTGGGAGGAGTAGGGGATG-----------TGTGCACACTCTCAG---------CGTCCACTGTTCC------CAGGA-GGCCCTCAGCTTAGATTGCTCAGGCAAAAACCATGGGCTGTGGCTGCACAGGGCCTAATGACAGGGCAGCCCACAACATAAGCTGCACAACATCTGGACCTTTGAAGGCCCATCTGCC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1309310 464 +  24206276 CAGGTCCCTTTAGGCT---GCTCTTC--TCCAGGAAAGCCACCCCTCACCCTGTAGCCATTCTGCAGGGTGTGGTGAGGAACCGCTTTCAGCC--C--CTCTGCCCAGATCAGCGTTCCGGGAAAAGCAGGCCTCAGCTTCCTGGCTTGGTCTGGCTGAAGGGTGGTGCTGGCTA-CTGCCTGCAGCCCTAATGGCT---CCCTGACTGGG--GCTGATTAGAGCAG--CTTCCACTCCAGGCGGAGCAGGGCCCCTTTCTGTTC-GTGTTCAGGTG--ACCAACCCCACTCTCCCAGCTCTGGAGGGTGGGGGTTTGGGAGGAGTAGGGGATG-----------TGTGCACACTCTCAG---------CGTCCACTGTTCC------CAGGA-GGTCCTCAGCTTAGATTGCTCAGGCAAAAACTGTGGGCTGTGGCTGCACAGGGCCTAATGACAGGGCAGCCCA-AATACAAGCTGCACAACATCTGGACCTTTGAAGGCCCATCTGCC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012114844v1      3995565 465 +   5013933 CAGGTCCTTTTAGGCT---GCTCTTC--TCCAGGAAAGCCACCCCTCACCCTGTAGCCATTCTGCAGGGTGTGGTGAGGAACCCCTTTCAGCC--C--CTCTGCCCGGATCAGCGTTCCGGGCAAAGCAGGCCTCAGCTTCCTGGCTTCGTCTGGCTGAAGGGTGGTGCTGGCTA-CTGCCTGCAGCCCTAATGGCT---CCCTGACTGGG--GCTGATGAGAGCAG--CTTCCACTCCAGGCGGAGCAGGGCCCCTTTCTGTTG-GTGTTCAGGTG--ACCAGCCCCACTCTCCCAGCTCTGGAGGTTGGGGGTTTGGGAGGAATAGGGGATA-----------TGTGCACACTCTCAG---------CGTCCACTGTTCC------CAGGA-GGCCCTCAGCTTAGATTGCTCAGGCAAAAACCATGGGCTGTAGCTGCACAGGGTCTAATGACAGGGCAGCCCACAATACAAGCTGCACAACATCTGGACCTTTGAAGGCCCATCCGCC
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113722654 445 - 132174527 CAGATCCCTTTAGGCT---GC---TC--TTCAGGAAAGCCAGCCCTCACCCTGTAGCCATTTTGCAGGGCGTGGGGAGGAGCCCCTTTCAGCC--C--CTCTGCCCTGATCAGAGCTCTGGGAAAAGCAGGCCTCAGTTTCCTGGCTTGCTTTGGCTGGACGGTGGTGCTGGCTA-CTGCCT------------GCT---CCCCGAGTGAGC-ACTGATTAGAGCAG--CTTCCACTCCAGGCAGAGTAGGGC-CCTTTCTGTTC-ATGTTCAGGAG--ACCAGCCCCACTCTCACAGCTCT-GAGGGTGGGGGCTT-TGAGGGGTAGGGGA-------------TGTGCACGCTCTCAG---------CGTCCACTGTTCC------CAGGA-GGCCCGTGGCTGAGATTGCTCAGGCAGAAACCATGGGCTGCGGCCGCACAGGGC-TAATGACAGGACAACCCACAACACAAGCTGCAGGACGTCTGGGCCGTTGAAGGCCCATCTGCC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              50276 438 -    125141 CAGGTCCCTTTAGGCG---GCCCTTC--TCCAGGAAAGCCACCCCTCACCCTGTGGCCGTTCCGTGGGGCACGGGGAGG----------AGCC--C--CTCTGCCCGGATCAGAGCTCTGGGAAAAGCAAGCCCCACTTTCCTGGCTTCGTCTGGCTGGACGGTGGTGCTGGCTATTTGCCT------------GCT---CCCCGAGTGAGC-ACTGATTAGAGCAG--CTTCCACTCCAGGCAGAGTGGGGC-CCTTTCTGTTC-ATGTTCAGGAG--ACCAGCCCCACTCTCCCAGCTCT-GAGGGTGGGGGCTT-GGAGGGGTAAGGGA-------------TGTGCACACTCTCAG---------CGTCCACTGTTCC------CAGGA-GGCCCGTGGCTGAGATTGCTCAGGCAGAAACCACGGGCTGCGTCCGCACAGGGC-TAATGG-AGGACAACCCACAACACAAGCTGCAGAACGTCTGGGCCACTGAAGGCCCATCTGCC
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        63294 450 +  11725426 CAGGTCCCTTTAGGCT---GCTCTTC--TCCAGGAAAGCCACCCCTCACCCTGTAGCCATTCTGCAGGGCATGGGGAGGAGCCCCTTTCAGCC--C--CTCTGCCCGGATCAGAACTCTGGGAAAAGCAAGCCTCAGTTTCCTGGCTTCCTCTGGCTGGACGGTGGTGCTGGCTA-CTGCCT------------GCT---CCCCGAGTGAGC-GCTGATTAGAGCAG--CTTCCACTCCAGGCAGAATGGGGC-CCTTTCTGCTC-GTGTTCAGGAG--ACCAGCCCCACTCTCCCAGCTCT-GAGGGTGGAGCCTT-GGAGGGGTAGGGGATG-----------TGTGCATGCTCTCAG---------TGTCCACTGTTCC------CAGGA-GGCCCAGGGCTGAGATTGCTCGGGCAGAAACCACGGGCTGCGGCCACACAGGGC-TAACGGCAGGACAACTCACAACACAAGCTGCAGAACGTCTGGGCCATTGAAGGCCCATCTGCC
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       656327 447 +    730879 CAGATCCCTTTAGGCT---GCTCTTC--TCCAGGGAAGCCACCCCTCACCCTGTAGCCGTTCTGCAGGGCGCGGGGAGGAGCCCCTTTCAG-G--C--CTCTGCCCCGATCCGAGCTCTGGGAAAAGCAGGCCTCAGCTTCCAGGCTTCGTCTGGCTGGACGGTGGTGCTGGCTA-CTGCCT------------GCT---CCCCGAGTGAGC-GCTGATTAGAGCAG--CTTCCACTCCAGGCGGAGTGGGGC-CCTTTCTGTTT-GTGTTCAGGAG--ACCAGCCCCACTCTCCCAGCTCT-GAGGGTGGGAGCTT-GGAGGGGCAGGGGA-------------TGTGCACACTCTCAG---------CGTCCACTGTTCC------CAGGA-GGCCCGTGGCTGACATTGCTCAGGCAGAAACCATGGGCTGCGGCCACACAGGGC-TAATGGCAGGACAACCCACAACACAAGCTGCAGAACGTCTGGGCCACTGAAGGCCCATCTGCC
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5759842 428 -  36342412 CAGACCCCTTTAGGCT---GCACCTC--TCCAGGACAGGCACCCCTTTCTCTTTAGCC----TGCTGGGGATGGTGTGAAACCCCTCCCAGTG--C--CTCTGCCCACATCAG----------------------AGCTTCCCAACTTTGTCTGG---------GGT---------CTGCCCGCAGCCCTAATTGCC--ACCCTGATCATGT-GTGGGTTAGAGCAG--CTCCCAC-CAGGGCAGGGTGAGGCCCTTTTCTGTGC-CTGTTGAGGTG--ACCATTGCTGCCTACCCAGCTTTGAAGGACCAGAGTGTGGGAGGAGTGGGGGATG-----------TGTGCACA--CTCAG--------CCACCCACTATTCCTGCTCGTGGAG-GGCCCTGGGCTTAAAGCCTTCAGACAAAAGCCGTGGGCTGTGGTGGTGCATGGCCTGATGGCAGGGCAGCCTGAACCACAGGCTGTGGAACGTCTGGGCCTTTGAAGGCCCATCTTCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90172318 338 + 124595110 CTGAACCCTTTGTATTTTAGCCTTACAGTCCAGACTAGAGACACC-------------------------------AGAAACCCCTCTCTTCCTTC--CTCTGCTAGCCTC-----------TAAGACAG--------TTTCTAATTGCTCGTGG---------GAT----GCCA-CTACCCAAAGGCTACAGTGCC---TACAGTTTAGG-------------TAG--CACTCATTT----------------ACTTTCTG--C-ACCGTCAAGTG--CCCAA-------------------------GCGTGTATAGCAGGAATGGGG----------------ATACACAGCCACAGCCA--CAGCCATCCGCTGCTTC------CAAAG-GATTCTCGTCATA-ATGGCTCAGGTGGAATCCGTGAGAC----------------CAGCAACAAGGT-GCCTGCACCCTGAGCTGCTCAGTGTGTAGGCC-TGAGAGGCCAATCTGTG
i mm10.chr9                 I 4 C 0
s canFam3.chr3               58189568 354 +  91889043 ------CCTTTGTTCT---------C--AGTGGGGCAGCCTCGCCTTTACCTTT--------------------------------------C--C--TTC----------------CCGAGA-------GCCTCAGCCACCCTGCCCCGGGTGG-----AGGTGATGCTGGCTA--TGC-TGCAGCCTTGATTGCCTCCCTCTGCTTGGG-------TTGGCACGG--CTCCCACCTCAAGCAGCACAGGGA-TCCCTCTGCTC-CTGGCCAGGTG--ACCAGATATGCCCTCCCCTTTCT-GGGGATGCAAGTGTGGGAACCGTAGAGGGGG------AGGAACGTGTACATGGTCAGTGGGTCAGCCGTCTACCGGTCC------CAGGAGGGCCCTCAGCTCAGAGCGCGCCCA-AGAAGCCACAGGCTGTAGC------------------AGGACCACT----------GCTGCAGGACATCCAGACCTctga-------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             816582 443 +   1727078 AGGATCCCCTTAAGCT---GCTTTTC--TATGGGACAAGCAGCCCATGCTCTTTAGCCATTCCTCAGGGCATGGTGAAGTTGCATTTTCAGTC--CATCTCTTTTCAGATCAGAGTTCCTGGGATCGCAGGCCTTGGCTTCTTATC-----CGGACTGCAGGGTGATGCTGGCTA-CTGC---------TGGTGACC---CTCTGCTTGAGTGACTGGCTGCAGCAGAACTCCCACCTCAGGAAGGATAGGGCCTCTTTCTTCTCTCTACTTAGGAGCCCCCATCCCTGCCTTCCCCGCT---GGGGGTGGGGT----GGGGGAGAGGGGCAAGTTAAGAAGGGATATGTGCACTGTTAG--------CCATTAGATGTTCC------CATGACGGCCCTCAGCTCAGATTGCTCAGGCAAAAGCCATGGGCTGTGGTGG-------------GACAGGGCAGCCCA----------TACGCAGCCCGCAGGGTTCTGGAAGCCCATGTGAC
i dasNov3.JH579681          C 0 I 1125
e manLeu1.NW_012102632v1      3867859 1920 +   4030761 M

a score=4215576.000000
s hg38.chr15_KI270850v1_alt     10004 446 +    430880 CTGCACAGTATTCCCATTTATGGAGCctgtgcctgt--------cccttaatgtacaattgatcttgttgagcctgtgccacagctgtgcacatggggcatcattcccatttcacagatgaggaaacaggctcagaggggaacttgcccaggctcacctagtcattcagtgagtggtgggcgggag-ggggggacttcgcattcatacccaggtctccagacccaagagctgatgcactctccaGCCCTCCCTCCAGGCCCCctggtcctgtgtgactcaaggggcagaattggtgcctatgaggggaagtccgagggatgtaaaACCTTCTTTCCTGTTGGAGCC------------CTGAGCTTCCTCAGGAGGTAGTGGGC--ATCATAGATGCTTCCTGGGGCCCCTCCCCTCCCTGGA--CTCTGAATGTT-GGCGGACATGTCCAAGACACTCCTGCCAGCTTCCC
s panTro5.chr15              23335649 446 -  83230942 CTGCACAGTATTCTCATTTATGGAGCctgtgcctgt--------cccttaatgtacaattgatcttgttgagcctgtgcagcagctgtgcacatggggcatcattcccatttcacagatgaggaaacaggctcagaggagaacttgcccagggtcacctagtcattcagtgagtggtgggcgggag-ggggggactccgcattcatacccaggtctccagacccaagagctgatgcactctccaGCCCTCCCTCCAGGCCCCctggtcctgtgtgacccaaggggcagaattggtgcctatgaggggaagtccgagggatgtaaaACCTTCTTCCCTGTTGGAGCC------------CTGAGCTTCCTCAGGAGGTAGTGGGC--ATCAAAGATGCTTCCCAGGGCCCCTCCCCTCCCTGGA--CTCTGAATGCT-GGCAGACATGTCCAAGACACTCCTGCCAGCTTCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23032741 446 -  99763055 CTGCACAGTATTCTCATTTATGGAGCctgtgcctgt--------cccttaatgtacaattgatcttgttgagcctgtgcagcagctgtgcacatggggcatcattcccatttcacagatgaggaaacaggctcagaggagaacttgcccagggtcacctagtcattcagtgagtggtgggcgggag-ggggggactccgcattcatatccaggtctccagacccaagagctgatgcactctccaGCCCTCCCTCCAGGCCCCctggtcctgtgtgacccaaggggcagaattggtgcctatgaggggaagtccgagggacgtaaaACCTTCTTCCCTGTTGGAGCC------------CTGAGCTTCCTCAGGAGGTAGTGGGC--ATCAAAGATGCTTCCCAGGGCCCCTCCCCTCCCTGGA--CTCTGAATGTT-GGCAGACATGTCCAAGACACTCCTGCCAGCTTCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2525880 445 +   2806052 CTGCACAGTATTCccatttatggagcctgtgcctgt--------cccttaatgtacaattgatcttgttgagcctgtgccacagctgtgcacatggggcatcattcccatttcacagatgaggaaacgggcccagaggggagcttgcccagggtcacctagtcattcaatgagtggtgggcgggag-ggggggacttcgcattcatacccaggtctccagacccaagagctgatgcactctccaGCCCTCCCTCCAGGCCCCCTGGtcctgtgtgacccaaggggcagaattggtgcctatgaggggaagtccgagggacgtaaaACCTTCTTTCCTGTTGGAGCC------------CTGAGCTTCCTCAGGAGGTAGTGGGC--ATCAAAGATGCTTCCCGGGGCCCCT-CCCTCCCTGGA--CTCTGAATGTT-GGTGGACATGTCCAAGACACTCCTGCCAGCTTCCC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22693183 446 - 121039945 CTGCACAGTATTCTCATTTATGGAGCctgtgcctgt--------cccttaatgtacaattgatcttgttgagcctgtgcagcagctgtgcacatggggcatcattcccatttcacagatgaggaaacaggctcagaggggaccttgcccagggtcacctagtcattcagtgagtggtgggcgggag-ggggggactccgcattcatacccaggtctccagacccaagagcagatgtactctccaGCCCTCCCTCCAGGCTCCctggtcctgtgtgacccaaggggcagaattggtgcctatgaggggaaatccgagggaCATAAAACCTTCTTCCCTGTTGGAGCC------------CTGAGCTTCCTCAGGAGGTAGTGGGC--ATCAAAGATGCTTCCCAGGGCCCCTCCCCTCCCTGGA--CTCTGAATGCT-GGCGGACATGTCCAAGACACTCCTGCCAGCTTCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113289112 446 - 169600520 CTGCACAGTATTCTCATTTATGGAGCctgtgcctgt--------cccttaatgtacagttgatgttgttgagcctgagcagcagctgtgcacacggagcgtcattcccatttcacagatgaggaaacaggctcagaggggaacttgcccagggtcacctagtcattcagtgagtggtgggtgggag-ggggggactccgcattcatacccaggtctccagacccaagagctgatgcactctccaGCCCTCCTTCCAGGCTCCCTGGTCCTGTGTGACCCAAGGGGCAGAATTGGTGCCTACGAGGGGAACTCCGAGGCACGTAAGACCTTCTTCCCTGTTGGAGCC------------CTGAGCTTCCTCAGGAGGTAATGGGC--ATCAAAGATGCTTCCCAGGGCCCCTCCCCTCTGTGGA--TTCTGAATGCT-GGCGGACATGTCCAAGACACTCCTGCCAGCTTCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61581664 446 + 171882078 CTGCACAGTATTCTCATTTATGGAGCCTGTGCCTGT--------CCCTTAATGTACAGTTGATGTTGttgaacctaagcagcacctgtgcacacagggcatcattcccatttcacagatgaggaaacaggctcagaggggaacttgcccggggtcacctagtcattcagtgactggtgggtggaag-gggggcactccaaattcatacccaggtctccagaccgaagagctgatgcactctccaGCCCTCCCTCCAGGCTCCCTGGTCCTGTGTGACCCAAGTAGCAGAATTGGTGCCTACAAGGGGAAGTCCGAGGCACGTAAGACCTTCTTCCCTGTTGGAGCC------------CTGAGCTTCCTCAGGAGGTAGTGGGC--ATCAAAGATGCTTCCCAGGGCCCCTCCCCTCTGTGGA--TTCTGAATGCT-GGCGGACATGTCCAAGACACTCCTGCCAGCTTCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3881537 446 +   4820037 CTGCACAGTATTCTCATTTATGGAGCCTGTGCCTGT--------CCCTTAATGTACAGTTGATGTTGTTGAGCCTGAGCAGCAGCTGTGCACACGGAGCGtcattcccatttcacagatgaggaaacaggctcagaggggaacttgcccagggtcacctagtcattcagtgagtggtgggtgggag-ggggggactccgcattcatacccaggtctccagacccaagagctgatgcactctccaGCCCTCCCTCCAGGCTCCCTGGTCCTGTGTGACCCAAGGGGCAGAATTGGTGCCTACGAGGGGAACTCCGAGGCACGTAAGACCTTCTTCCCTGTTGGAGCC------------CTGAGCTTCCTCAGGAGGTAGTGGGC--ATCAAAGATGCTTCCCAGGGCCCCTCCCCTCTGTGGA--TTCTGAATGCT-GGCGGACATGTCCAAGACACTCCTGCCAGCTTCCC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9748978 446 +  10730278 CCGCACAGTATTCTCATTTATGGAGCCTGTGCCTGT--------CCCTTAACGTACAGTTGATGTTGTTGAGCCTGAGCAGGAGCTGTGCACACGGAGCGtcattcccatttcacagatgaggaaacaggctcagaggggaacttgcccagggtcacctagtcattcagtgagtggtgggtgggag-gggggaactccgcactcataaccaggtctccagaccgaagagctgatgcactctccaGCCCTCCCTCCAGGCTCCCTGGTCCTGTGTGACCCAAGGGGCAGAATTGGTGCCTACGAGGGGAAGTCCGAGGCACGTAAGACCTTCTTCCCTGTTGGAGCC------------CTGAGCTTCCTCAGGAGGTAGTGGGC--ATCAAAGATGCTTCCCAGGGCCCCTCCCCTCTGTGGA--TTCTGAATGCT-GGCGGACATGTCCAAGACACTCCTGCCAGCTTCCC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1309774 446 +  24206276 CTGCACAGTATTCTCATTTATGGAGCCTGTGCCTGT--------CCCTTAATGTACAGTTGATGTTGttgaacctaagcagcacctgtgcacacagggcatcattcccatttcacagatgaggaaacaggctcagaggggatcttgcccggggtcacctagtcattcagtgactggtgggtggaag-gggggcactccacattcatatccaggtctccagaccgaagagctgatgcactctccaGCCCTCCCTCCAGGCTCCCTGGTCCTGTGTGACCCAAGTAGCAGAATTAGTGCCTACGAGGGGAAGTCCGAGGCACGTAAGACCTTCTTCCCTGTTGGAGCC------------CTGAGCTTCCTCAGGAGGTAGTGGGC--ATCAAAGATGCTTCCCAGGGCCCCTCCCCTCTGTGGA--TTCTGAATGCT-GGCGGACATGTCCAAGACACTCCTGCCAGCTTCCC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012114844v1      3996030 447 +   5013933 CTGCACAGTATTCTCATTTATGGAGCCTGTGCCTGT--------CCCTTAATGTACAGTTGATGTTGTTGAGCCTGAGCAGCACCTGTGCACACGGGGCGtcattcccatttcacagatgaggaaacaggctcagaggggaacttgcccagggtcacctagtcattcagtgagtggtgggtggcagcggggggactccgcattcatacccaggtctccagacccaagagctgatgtactctccaGCCCTCCCTCCAGGCTTCCTGGTCCTGTGTGACCCAAGGGGCAGAATTGGTGCCTACGAGGGGAAGTCCGAGGCACGTAAGACCTTCTTCCCTGTTGGAGCC------------CTGACCTTCCTCAGGAGGTAGTGGGC--ATCAAAGATGCTTCCCAGGGCCCCTCCCCTCCATGGA--TTCTGAATGCT-GGCGGACATGTCCAAGACACTCCTTCCAGCTTCCC
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113723099 427 - 132174527 CCACGCGGTATCCTCATTTATGGAGACCATGCCTCT--------CTCTTCATGTACAGTTAATCTTGTTGAGC---------AGCTGTGCATATGGGGGatcattcccatttcacagatgagaaaacaggctcagagggaaacttgcctagggtcgcctagtcatttagtgggtgctgtgtgtgtg-tgtgggggtccacattcaaacccaggtctccagaactaagagctgatgcactttccagccc----tccaggctcccTGGTCTTGTGTGGCCCAAGGGGCAGAATGGCTGCCTATGAGGGGCAGTCCGAAGGACGT--AACCTTCTTCCC---TGGTGCC------------CTGAGCGTCCTCAGGAGGTAGTGGGC--ATCAAAGATGCTTCCCAGAGCCCCTCCCCTCCCTGGA--CTCTGAATGCT-GGCAGTCATGCCCAAGACACTCCTGCCAGCTTCC-
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              50714 424 -    125141 CCGCACGGTGTCCTCATTTATAGAGACCACGCCTCT--------CCCTTCATGTACAGTTAATCTTGTTGAGC---------AGCTGTGCATATGGGGGatcattcccatttcacagacgaggaaacaggctcagaggggaacttgcccagggtcacctagtcatttagtgggtgctgtgtgtgtg-tggcggggtctgcattcaaacccaggtctccagaactaagagctgatgcactttccagccc----tccaggctcccTGGTCTTGTGTGGCCCAAGGGGCAGAATGGCTGCCTATGAGGGGCAGTCCGAGGGACAT--AAC---CTTCCC---TGGCACA------------CTGAGCGTCCTCAGGAGGTAGAGGGC--ATGAAAGATGCTTCCCAGGGCCCCTCCGCTCCCTGGA--CTCTGAATGCT-GGCGGTCATGCCCTAGACACGCCTGCCAGCTTCC-
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        63744 424 +  11725426 CTGCACGGTGTCCTCGTTTATGGAGACTGTGCCTCT--------CCCTTCATGTACAGTTAATTTTGTTGAGC---------AGCTGTGCATATCGAGAatcattcccatttcacagatgaggaaacaggctcagaggagaacttgcccagggtggcctagtcatttagcgggtgctgtgt---cg-ggggggggtccacattcaaacccaggtctccagaactaagaggtgatgcactttccagtcc----tccaGTCTCCCTGGTCTTGTGTGGCCCAAGGGACAGAATGGCTGCCTATGAGGGGCAGTCCAAGGGGCGT--AACCTTCTTCCC---TGGCGCC------------CCGAGCGTCCTCAGGAGGTAGTGGGC--ATCAAAGATGCTTCCCAGGGCCCCTCCCCTCCCTGGA--CTCTGAATGCT-GGCAGTCATGCCCTAGACACTCCTGCCAGCTTCC-
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       656774 426 +    730879 CCGCACGGTATCCTCATTTATGGAGACTGTGCCTCT--------CCCTTCACGTACAGTCAATCTTGTTGAGC---------AGCTGTGCATATGGGGGatcattcccatttcacagatgaggaaacaggctcagaagggaacttgcccagggtcgcctagtcgtttagtgggtgctgtgt--gtg-tgggggggtccacattcaaacccaggtctccagaactaagagctgatgcacttcccagccc----tccaggctcccTGGTCTTGTGTGGCCTAAGGGGCAGAATGGCTGCCTATGAGGGTCAGTCCGAGGGCCGT-AAACCTTCTTCCC---TGGCGCC------------CTGAGCGTCCTCAGGAGGTAGTGGGC--ATCAAAGATGCTTCCCAGTGCCCCTCCCCGCCCTGGA--CTCTGAATGCT-GGCGGTCATGCCCAAGACACTCCTGCCAGCTTCC-
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5760270 348 -  36342412 CAGCAAAGTGTTCTCATTTATGGA-------------------------------------------------------------TGAGAAtaaatgtaatcgttcccatgttac----------atagactcagaggagaatgtgcccaaggtcatctagttagttagc-------------cag-tgggggagtctgcatttagatcctg--------------gAGCAGATGCAGGGAGCAA-------TCCAGGCCCCTTGGAT---tgtgacccaaggggcagaattagtgccaatgaggggaagtctgaggaaggt-aaaCCTTTTTCCCTGTTGGTGTC------------CTGAGTTTCCTCAGGAGGTGGCGGGCTGCCCGAAGATACTTCCCA-AGCCCCTCTCTTTCCTGGACTCTCTGAATGCC-AGTGGATATGCCCAAGACACCCCTGCCAGTTTCCC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90172656 403 + 124595110 CAGTAATCTATTCT-GGTTAAGGAGCCTGTGTCTGC--------TTCttag-gtgcacttcctctcattgagcctgcatggcagctgagca---gaggagagcttcctgttctatagatgaggaaacagtttc--cagcagacttgcctaaggtcacc--accattcag------------------ggatggaggctg-attcaaagccccttctgtattccctaaagcaggtgtagttttcagtac----TGTGGGTTTCTTAGCTTTGTGTGACCCAAGGGGTCTAATCAGTGC---TAGTGGGCAGTCTAAAGACGGTGACACCGTCTTCTCTATTGGAGTC------------TCCAGCTTGCTACGGAGCTGGTGGAT--TTCCTGAATGCATCTCATGACCTTCC----------A--TTATCTATGCCAGGCAGATGTGCCCAAAGTGCTTCTGCCAGCTTCCC
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58189922 342 +  91889043 ----------------------gagccggggcctgt--------cctctcatat---ggtcatcttgttgagtct--gcagcagctgtgcatattg-gtgtcgttcccgttt-acagatgagcaga-aggctcagtgggaaccttgcccagggt--cCTTGCTGCT---------------------GG-----------------------------------------TGCTGCACTTTCTGGCCC----TCGGGGCTCCC-AGCCTTGTGCAGCCCAAGGGGTACACTTGGTGC--AAAGAGGGAGCTGCAGAGGAGGCAAGACCCTCCCCCC----AGAGGG------------CTGGGCTTCCTCTGGAGGTGGTGGGCTACCCAAAGATGCCTCCCCAGGCCCC--CCTGCCCTGGC--CTCTGCACGCC-AGCGGATGTGCCCGAGATGCCCCTGCCTGCTTCCC
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             818150 360 +   1727078 CTGCCCAATATTCTCATTTATGGAGGTTGTGCATTTATGGATGGCTCTT----TACCGTTGATCTGGCTGAGCCTGTGCAGC--CTGGGCATACAGGGC-----Tcccattttacagatgaggaaacaggcttatagaggaactcg-ctaagttcacctggttatccag------------------tggtggaagatgcattcaagcccaggtctccagcccctaaagctgatgtgctttccagcac----tctag-ctgccttgtcctgcatgacccaaaggccaga-tatgtgccaatgaggggaagtccaagggagatcaa---tccttccctgttggagccatctcacagtggctgagcttcctcaggaggtaa-------tTCCAAGACTGTTCCT-----TCCT-------------------------------------------------------------
i dasNov3.JH579681          I 1125 C 0
e manLeu1.NW_012102632v1      3867859 1920 +   4030761 M

a score=9169278.000000
s hg38.chr15_KI270850v1_alt     10450 787 +    430880 TTCTCTGGGCAGCCCTGGGCCCAGAGAACAGGGTGTCCTGGTGGCCGTGGGCATCTCCGCCACTCGGGTGTGGGTGTGGATGCTTTTGGAGTGATTCATTGCCTTAGGGAGATAGAGG-GAA--GGTCAGAAGCCCTGGCCAGCTGGGAGGGAGCACAGT-G-CTGGAAATGGCTGGCCTGCAGAGAAGACGCAGAATAGCCTGGAGGCCTGGGCACAAGCTGCCCTGCTCAGGACAGCTGTCTGGGACTTTG--GAAGACACCATTTTGTCAGATTTGGGTGCAGACCCGTTTTCCTCTCCTAATAGGGtgggtgtgtggg-----------------------gcagcatc--cccaggggcg------gaggcttct-----------gagctccgctttgaag-gtttggctgtgtgtgaaatggcagagaagggctttccagatggaggctacagagtgagcaaaggcccagcaggcggaaagtgca--gggtgtctgtgggcagtcacagatgatgtgggcagtgggggctcagctgagcaggatgggcct---ctgggacgtgcaggaagagcagctgagggccagCCCTCCCTGTGTGACCCTGGTGCTTCTTCCCTAGAAAGGTGTGTTCCTGCTCTCCAACAAGGACTACTTCATTCAGCCCCTGGACGGTGC-----cccagcctggcccagccatgcccagcccCATGTGGTGTACAAGCATCCGGCCCCGGAGAGGCTGGCACAGCGGGGTGATTCCAGTGCTCCAAGTACCTGTGGGGTGCAAGGTATG--CTCTTCTACTCCCAGTTCTCAGGCAGGTGCTA--GGCCTGGGGACA
s panTro5.chr15              23336095 783 -  83230942 TTCTCTGGGCAGCCCTGGGCCCAGAGAACAGGGTGTCCTGGTGGCCGTGGGCATCTCCTCCGCTCGGGTGTGGCTGTGGATGCTTTTGGAGTGATTCATTGCCTTAGGGAGATAGAGG-GAA--GGTCAGAAGCCCTGGCCAGCTGGGAGGGAGCACAAT-G-CTGGAAATGGCTGGCATGCAGAGGAGATGGAGAATAGTCTGGAGGCCTGGGCACAAGCTGCCCCGCTCAGGATGGCTGTCTGGGACT------AAGACACCGTTTTGTCAGATTTGGATGCAGACACATTTCCCTCTCCTAATggggtgggtgtgtggg-----------------------gcagcatc--cccaggggcg------gaggcttct-----------gagctccgctttgaag-gtttggctgtgtgtgaaatggcagagaagggctttccagatggaggctacagagtgagcaaaggcccagcgggacggaagtgca--gtgtgtccacgtacagtcacaggtggtatgggcagtgggggctcagctgagcaggacaggcct---ctgggacgtgcaagaagagcagctgagggccagCCCTCCCTGTGTGACCCTGGTGCTTGTTCCCCAGAAAGGTGTGTTCCAGCTCTCCAACGAGGACTACTTCATTCAGCCCCTGGACAGTGC-----cccggcccggcctggccatgcccagcccCATGTGGTGTACAAGCGTCAGGCCCCGGAGAGGCTGGCACAGCGGGGTGATTCCAGTGCTCCAAGCACCTGTGGAGTGCAAGGTATG--CTCTTCTGCTCCCAGTTCTCGGGTGGGTGCTG--GGCCTGGGGACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23033187 783 -  99763055 TTCTCTGGGCAGCCCTGGGCCCAGAGAACAGGGTGTCCTGGTGGCCGTGGGCATCTCCTCCGCTCGGGTGTGGCTGTGGATGCTTTTGGAGTGATTCATTGCCTTAGGGAGATAGAGG-GAA--GGTCAGAAGCCCTGGCCAGCTGGGAGGGAGCACAAT-G-CTGGAAATGGCTGGCATGCAGAGGAGATGGAGAATAGCCTGGAGGCCTGGGCACAAGCTGCCCCGCTCAGGATGGCTGTCTGGGACT------AAGACACCGTTTTGTCAGATTTGGATGCAGACACATTTCCCTCTCCTAATggggtgggtgtgtggg-----------------------gcagcatc--cccaggggcg------gaggcttct-----------gagctccgctttgaag-gttcggctgtgtgtgaaatggcagagaagggctttccagatggaggctacagagtgagcaaaggcccagcgggacgaaagtgca--gtgtgtccacgggcagtcacaggtggtatgggcagtgggggctcagctgagcaggacaggcct---ctgggacgtacaagaagagcagctgagggccagCCCTCCCTGTGTGACCCTGGTGCTTGTTCCCCAGAAAGGTGTGTTCCAGCTCTCCAACGAGGACTACTTCATTCAGCCCCTGGACAGTGC-----cccggcccggcctggccatgcccagcccCATGTGGTGTACAAGCGTCAGGCCCCGGAGAGGCTGGCACAGCGGGGTGATTCCAGTGCTCCAAGCACCTGTGGAGTGCAAGGTATG--CTCTTCTGCTCCCAGTTCTCGGGTGGGTGCTG--GGCCTGGGGACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2526325 787 +   2806052 TTCTCTGGTTAGCCCTGGGCCCAGAGAACAGGGTGTCCTAGTGGCCGTGGGCATCTTCGCCACTCGGGTGTGGGTGTGGATGCTTTTGGAGTGATTCATTGCCTTAGGAAGATAGAGG-GAA--GGTCAGAAGCCCTGGCCAGCTGGGAGGGAGCACAGT-G-CTGGAAATGGCTGGCCTGCAGAGAAGACGCAGAATAGCTTGTAGGCCTGGGCACAAGCTGCCCTGCTCAGGACGGCTGTCTGGGACTTTG--GAAGACACCATTTTGTCAGATTTGGATGCAGACCCGTTTTCCTCTCCTAATGGGGTGGGTGTGTGgg-----------------------gcagcatc--cccaggggcg------gaggcttct-----------gagctccactttgaag-gtttggctgtgtgtgaaatggcagagaagggctttccagatggaggctacagagtgagcgaaggcccagcaggcggaaagtgca--gggtgtctgtggGCAGTCACAGATGATGTGGGCAGTGGGGGCTCAGCTGAGCAGGATGGGCCT---CTGGGACGTGCAGGAAGAGCAGCTGAGGGCCAGCCCTCCCTGTGTGACCCTGGTGCTTCTTCCCTAGAAAGGTGTGTTCCTGCTCTCCAACAAGGACTACTTCATTCAGCCCCTGGACGGTGC-----cccagcctggcccagccatgcccagcccCATGTGGTGTACAAGCATCCGGCCCCGGAGAGGCTGGCACAGCGGGGTGATTCCAGTGCTCCAAGTACCTGTGGGGTGCAAGGTATG--CTCTTCTGCTCCCAGTTCTCAGGCAGGTGCTA--GGCCTGGGGACA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22693629 783 - 121039945 TTCTCTGGGCAGTCCTGGGCCCAGAGAACAGGGTGTCCTGGTGGCCGTGGGCATCTCCTCCGCTCGGGTGTGGGTGTGGATGCTTTGGGAGTGATTCATTGCCTTAGGGAGATAGAGG-GAA--GGTCAGAAGCACTGGCCAGCTGGGAGGGAGCACAGT-G-CTGGAAATGGCTGGCATGCAGAAGAGATGGAGAATAGCCTAGAGGGCTGGGCAGAAGCTGCCCCGCTCAGGATGGCTGTCTGGGACT------AAGACACCGTTTTGTCAGATTTGGATGTAGACACATTTCCCTCTCCTAATGGGGTGGGTGTGTGGG-----------------------GCAGCATC--CCCAGGGATG------GATGCTtct-----------gagctccgctttgaag-gtttggctttgtgtgaaatggcagagaagggctttccagatggaggctacagagtgagcaaaggcccagcaggaggaaagtgca--gtgtgtccgtggGCAGTCACAGGTGGTGTGGACAGTGGGGGCTCAGCTGAGCAGGATGGGCCT---CTGGGACATCCAAGAAGAGCAGCTGAGGGCCAGCCCTCCCTGTGTGACCCTGGTGCTTCTTCCCCAGAAAGGTGTGTTCCAGCTCTCCAACGAGGACTACTTCATTGAGCCCCTGGATGGTGC-----cccggcccggcctggccacgcccagcccCATGTGGTGTACAAGCGTCAGGCCCCAGAGAGGCTGGCACAGCGGGGTGATTCCAGTGCTCCAAGCACCTGTGGAGTGCAAGGTATG--CTCTTCTGCTCCCAGTTCTTGGGTGGGTGCTG--GGCCTGGGGACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113289558 777 - 169600520 TTCTCTGGGCGGCCCTGGGCCCAGAGAACAGGGTGTCCTGGTGGCCATGGGCATCTCCTCTGCTCGGGTGTGGGTGTAGATGCTTT-GGAGTGATTCATTGCCTTAGGGAGATAGAGG-GAA--GGTCAGAAGCCCTGGCCAGCTGGGAGGGAGCACAGT-G-CTGGAAATGGCTGGCATGCAGAGGAGATGGAGAATAGCCTGGAGGCCTGGACACAAGCTTTCCTGCTCAGGATAGCTGTCTGAGACTCTG--GAAGACACCATTTTGTCAGATTGGGATGCAGACCCATTTCCCTCTCCTAATGGGGtgggtgtgtggg-----------------------gcagcatc--cccaggggcg------gaggcttct-----------gagcttcactttgaag-gtttggctgtgtgtgaaat---------gggctttccaggtggaggctacagagtgtgcaaaggcccagtgggatgaaagtgca--gagtgtccgtgggcagtcacaggtggtatgggcagtgggggctcagctggacaggacgggtct---ctgggacatgcaggaagaacagctgagggccagCCCTCCCTGTGTGACCCTAGTGCTTCTTCCCCAGAAAGGTGTGTTCCAGCTCTCCAATGAGGACTACTTCATTGAGCCCCTGGATGGTGC-----cccggcccggcctggccacgcccagcccCATGTGGTGTACAAGCGTCAGGTCCCGGAGAGGTTGGCACAATGGGGTGATTCCAGTGCTCCAAGCACCTGTGGGGTGCAAGGTATG--CTCTTCTGCTCCCAATTCTCGGGTGGGTGCTG--GGCCTGGGGACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61582110 729 + 171882078 TTCTCTGGGCGGCCCTGGGCCCAGAGAACAGGGTGTCCTGGTGGCCATGGGCATCTCCTCTGCTCGGGTGTGGGTGTAGATGCTTT-GGAGTGATTTGTTCCCTTAGGGAGATAGAGG-GAA--GGTCAGAAGCCCTGGCCATGTGGGAGGGAGCACAGT-G-CTGGAAATGGCTGGCATGCAGAGGAAATGGAGAATAGCCTGGAGGCCTGGGCACAAGCCTCCCCACTCAGGATGGCTGTCTAGGACTCTG--GAAGACAGCATTTTGTCAGATT--------------------------------------------------------------------------------------TG------GAGCCTtct-----------gagctctgctttgaag-gtttggctgtatgtgaaatggcagagaagggctttccaggtgcaggctacagagtgtgcaaaggcccagcgggaggaaagtgca--gagtgtctgtggGCAGTCACAGGTGGTGTGGGCAGTGGGGACTCAGCTGGGCAGGATGGGCCT---CTGGGACGTGCAGGAAGAGCAGCTGAGGGCCAGTCCTCCCTGTGTGACCCTGGTGCTTCTTCCCCAGGAAGGTGTGTTCTAGCTCTCCAATGAGGACTACTTCATTGAGCCCCTGGACGCTGCcccggcccagcccggcccagccacgcccag-cccaTGTGGTGTACAAGCATCAGGCCCCGGAGAGGCTGGCACAGTGGGGTGATTCCAGTGCTCCAAGCACCTGTGGGATGCAAGGTATG--CTCTTCTGCTCCCAGTTCTCGGGTGGGTGCTG--GGCCTGGGGACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3881983 777 +   4820037 TTCTCTGGGCGGCCCTGGGCCCAGAGAACAGGGTGTCCTGGTGGCCATGGGCATCTCCTCTGCTCCGGTGTGGGTGTAGATGCTTT-GGAGTGATTCATTGCCTTAGGGAGATAGAGG-GAA--GGTCAGAAGCCCTGGCCAGCTGGGAGGGAGCACAGT-G-CTGGAAATGGCTGGCATGCAGAGGAGATGGAGAATAGCCTGGAGGCCTGGACACAAGCTGCCCTGCTCAGGATAGCTGTCTGAGACTCTG--GAAGACACCATTTTGTCAGATTGGGATGCAGACCCATTTCCCTCTCCTAATGGGGTGGGTGTGTGGG-----------------------GCAGCATC--CCCAGGGGCG------GAGGCTTCT-----------GAGCTTCACTTTGAAG-GTTTGGCTGTGTGTgaaat---------gggctttccaggtggaggctacagagtgtgcaaaggcccagtgggatgaaagtgca--gagtgtccgtgggcagtCACAGGTGGTATGGGCAGTGGGGGCTCAGCTGGACAGGACGGGTCT---CTGGGACATGCAGGAAGAACAGCTGAGGGCCAGCCCTCCCTGTGTGACCCTAGTGCTTCTTCCCCAGAAAGGTGTGTTCCAGCTCTCCAATGAGGACTACTTCATTGAGCCCCTGGATGGTGC-----CCCAGCCCGGCCTGGCCACGCCCAGCCCCATGTGGTGTACAAGCGTCAGGTCCCGGAGAGGTTGGCACAATGGGGTGATTCCAGTGCTCCAAGCACCTGTGGGGTGCAAGGTATG--CTCTTCTGCTCCCAATTCTCGGGTGGGTGCTG--GGCCTGGGGACA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9749424 777 +  10730278 TTCTCTGGGCGGCCCTGGGCCCAGAGAACAGGGTGTCCTGGTGGCCATGGGCATCTCCTCTGCTCGGGTGTGGGTGTAGATGCTTT-GGAGTGATTCATTGCCTTAGGGAGATAGAGG-GAA--GGTCAGAAGCCCTGGCCAGCTGGGAGGGAGCACAGT-G-CTGGAAATGGCTGGCATGCAGAGGAGATGGAGAATAGCCTGGAGGCCTGGACACAAGCTGCCCTGCTCAGGATAGCTGTCTGAGACTCTG--GAAGACACCATTTTGTCAGATTGGGATGCAGACCCATTTCCCTCTCCTAATGAGGTGGGTGTGTGgg-----------------------gcagcatc--cccaggggcg------gaggcttct-----------gagcttcactttgaag-gtttggctgtgtgtgaaat---------gggctttccaggtggaggctacagagtgtgcaaaggcccagtggaatgaaagtgca--gagtgtctgtgggcagtcacaggtggtgtggggagtgggggctcagctggacaggacgggtct---ctgggacatgcaggaagaacagctgagggccagCCCTCCCTGTGTGACCCTAGTGCTTCTTTCCCAGAAAGGTGTGTTCCAGCTCTCCAATGAGGACTACTTCATTGAGCCCCTGAATGGTGC-----CCCGGCCCGGTCTGGCCACGCCCAGCCCCATGTGGTGTACAAGCGTCAGGTCCCGGAGAGGTTGGCACAATGGGGTGATTCCAGTGCTCCAAGCACCTGTGGGGTGCAAGGTATG--CTCTTCTGCTCCCAGTTCTCGGGTGGGTGCTG--GGCCTGGGGACA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1310220 729 +  24206276 TTCTCTGGGCGGCCCTGGGCCCAGAGAACAGGGTGTCCTGGTGGCCATGAGCATCTCCTCTGCTCGGGTGTGGGTGTAGATGCTTT-GGAGTGATTTGTTCCCTTAGGGAGATAGAGG-GAA--GGTCAGAAGCCCTGGCCATGTGGGAGGGAGCACAGT-G-CTGGAAATGGCTGGCATGCAGAGGAGATGGAGAATAGCCTGGAGGCCTGGGCACAAGCCTCCCCACTCAGGATGGCTGTCTAGGACTCTG--GAAGACAGCATTTTGTCAGATT--------------------------------------------------------------------------------------TG------GAGCCTtct-----------gagctctgctttgaag-gtttggctgtatgtgaaatggcagagaagggctttccaggtgcaggctacagagtgtgcaaaggcccagagggaggaaagtgca--gagtgtccgtgggcagtcacaggtggtgtgggcagtgggggctcagctgggcaggatgggCCT---CTGGGACGTGCAGGAAGAGCAGCTGAGGGCCAGTCCTCCCTGGGTGACCCTGGTGCTTCTTCCCCAGGAAGGTGTGTTCTAGCTCTCCAATGAGGACTACTTCATTGAGCccctcgccgctgccctggcccggcccggcccagccacgcccag-cccgTGTGGTGTACAAGCATCAGGCCCCGGAGAGGCTGGCACAGTGGGGAGATTCCAGTGCTCCAAGCACCTGTGGGGTGCAAGGTATG--CTCTTCTGCTCCCAGTTCTCGGGTGGGTGCTG--GGCCTGGGGACA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3869784 786 +   4030761 TTCTCTGGGCGGCCCTGGGCCCAGAGAACAGGGTGTCCTGGTGGCCATGGGCATCTCCTCTGCTCGGGTGTGGGTGTAGATGCTTT-GGAGTGATTCATTGCCTTAGGGAGATAGAGG-GAA--GGTCAGAAGCCCTGGCCAGCTGGGAGGGAGCACAGT-G-CTGGAAATGGCTGGCATGCAGAGGAGATGGAGAATAGCCTGGAGGCCTGGACACAAGCTGCCCTGCTCAGGATAGCTGTCTGAGACTCTG--GAAGACACCATTTTGTCAGATTGGGATGCAGACCCATTTCCCTCTCCTAATggggtgggtgtgtggg-----------------------gcagcatc--cccaggggcg------gaggcttct-----------gagcttcactttgaag-gtttggctgtgtgtgaaatggcagagaagggctttccaggtggaggctacagagtgtgcaaaggcccagtgggatgaaagtgca--gagtgtctgtgggcagtcacaggtggtgtgggcagtgggggctcagctggacaggacgggtct---ctgggatatgcaggaagaacagctgagggccagCCCTCCCTGTGTGACCCTAGTGCTTCTTCCCCAGAAAGGTGTGTTCCAGCTCTCCAATGAGGACTACTTCATTGAGCCCCTGGATGGTGC-----cccggcccggcctggccacgcccagcccCATGTGGTGTACAAGCGTCAGGTCCCGGAGAGGTTGGCACAATGGGGTGATTCCAGTGCTCCAAGCACCTGTGGGGTGCAAGGTATG--CTCTTCTGCTCCCAGTTCTCGGGTGGGTGCTG--GGCCTGGGGACA
i manLeu1.NW_012102632v1    M 1920 C 0
s colAng1.NW_012114844v1      3996477 786 +   5013933 TTCTCTGGGTGGCCCTGGGCCCAGAGAACAGGGTGTCCTGGGGGCCGTGGGCATCTCCTTTGCTCGGGTGTGGGTGTAGATGCTTT-GGAGTGATTCATTGCCTTAGGGAGATAGAGG-GAA--GGTCAGAAGCCCTGGCCAGCTGGGAAGGAGCACAGT-G-CTGGAAATGGCTGGCATGCAGAGGAGATGGAGAATAGCGTGGAGGCCTGGGCACAAGCTGCCCTGCTCAGGATGGCTGTCTGAGACTCTG--GAAGACACCATTTTGTCAGATTGGGATGCAGACCCATTTCCCTCTCCTAATggggtgggtgtgtggg-----------------------gcagcttc--ctcaggggtg------gaggcttct-----------gagcttcactttgaag-gtttggctgtgtgtgaaatggcagagaagggctttccaggtggaggctacagagtgtgcaaaggcccagtgggatgaaagtgca--gagtgtccgtgggcagtcacaggtggtgtgggcagtgggggctcagctggacaggatgggtct---ctgagacatgcaggaagagcagctgagggccagCCCTCCCTGTGTGACTCTGGTGCTTCTTCCCCAGAAAGGTGTGTTCCAGCTCTCCAACGAGGACTACTTCATTGAGCCCCTGGACGGtgc-----cctggcctggcctggccatgcccagcccCATGTGGTGTACAAGCGTCAGGTCCCGGAGAGGTTGGCACAGCGGGGTGATTCCAGTGCTCCAAGCACCTGTGGGGTGCAAGGTATG--CTCTTCTGCTCCCCGTTCTCGGGTGGGTGCTG--GGCCTGGGGACA
i colAng1.NW_012114844v1    C 0 I 251
s calJac3.chr10             113723526 759 - 132174527 TTCTCTGGGCAGCCCTGGGCCCAGAGAACTGGATGTCTTGGTGGCTGTGGACATCTCCTCCACAAGGGTGTGGGTGTAGATGCTTTTGGAGTGATTCATTGCCTTAGGGAGATAGAAA-GCA--GGTCATAGGCCCTGGCCAGCTGGGAGGGGGCACAGT-G-CTGGAAGTGGCTGGCATGCAGAGAAGATGCAGAATAGCCTGGAGGCCTGGGCACAGGCTGCCCCATGCAGGGCAGCT-TGTGGGACTCTG--GAAGACACCGTTTTGTCAGATTTGGATGCAGACCTGTTTGCCTTTCCGAATGGGGTGGGTGTATGGG--------------------------GCAtc--cccagcggca------gaggctttt-----------gagctccgctttgaag-gtttggctgtgtgaggaatggcagagaagggcattccagatggaggctgcagagtgagcaaaggcccagcaggaggagagtgca--gtgtgtCC-CCAGCAGTCACAGGTGGTGTGCGAAGTGGCGGCTCAGCTGGGCAGGACGGGCCT---CTGGGACGTGCGGGAAGAGCAGC-----------CCTCCCTGTGTAACCCTGGTTCCTCTTCCCCAGAAAGGTGTGTTCCAGCTCTCCAACGAGGACTACTTCATTGAGCCCCTGGACGGTGA-----CCCGGCTCGGCCCGGCCATGCCCAGCCCCACGTGGTGTACAAGCGTCAGGCCCTGGAGAGGCCAGCACAGCGGGGTGATTCCATTGCTGTAAGCACCTGTGGGGTGTCAGGTATG--CTCCTCTGCTCCCAGTTCTCGGCCA--------------GGGGACG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              51138 750 -    125141 TTCTGTGGGCAGCCCTGGGCCCAGAGAACAGAATGTCTTGGTGGC-----------------------TGTGGGTGTAGATGCTTTTGGAGTGATTCATTGCCTTAGGAAGATAGAGG-GCA--GGTCAGAGGCCCTAGCCAGCTGGGA-GGGGCACAGT-G-CTGGTTTTGGCTAGCATGCAGAGGAGATGCAGAATAGCCTGGAGGCCTGGGCACAGGCTGCCCCACTCAGGACAGCT-TGTGGGACTCTG--GAAGACACCGTTTTGTCTGATTTGGGTGCAGACCTGTTTGCCTCTCCAAATGGGGtgggtgtgtggg-----------------------gcagcatc--cccagggtca------gaggcttct-----------gagcttcgctttgaag-gtttggctgtgtgtggaatggcagagaagggcattccagatggaggccgcagagtgagcaaagccccagcgggaggaaagcgct--gggtgtcc-ccagcagtcacaggtggtgtgcgcgctgggggctcagctgggcgggacgggCCT---CTGGGATGTGTGGGAAGAACAGC-----------CCTCCCTGCGTGACCCTTGTTCTTCTTCCCCAGAAAGGTGTGTTCCAGCTCTCCAATGAGGACTACTTCATTGAGCCCCTGGATGGTGC-----CCAGGCCCGGCCCGGCCATGCCCAGCCTCATGTGGTGTACAAGCGTCAGGCCCTGGAGAGGCTGGCACAGCGGGGTGATTCCACTGCTACAAGCACCTGTGGGGTGCCAGGTATG--CTCCTCTGCTCCCAGTTCTCGGCCAGGTGCTG--GGCCTGGGGACG
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        64168 774 +  11725426 TTCTGTGGGCAGCCCTGGGCCCAGAGAACAGGATGTCTTGGTGGCTGTGGACATCTCCTCCGCGCGGGTGTGGGTGTAGATGCTTTTGGAGTGATTCATTGCCTTAGGGAGATAGAGG-GCA--GGTCAGAGGCCCTGGCCAGCTGGGAGGGGGCACAGT-G-CTGGAAACGGCTGGCATGCAGAGGAGATGCAGAATAGCCTGGAGGCCTGGGCACAGGCTGCCCCACGCAGGATGGCT-TGTGGGGCTCTG--GAAGACACTGTTTTGTCAGATTTGGATGCAACCCCATTTGCCTCTCCGAATggggtgggtgtgtggg-----------------------gcagcatc--cccaggggcg------gaggcttct-----------gagctctgctttgaag-gtttggctgtgtgtggaatggcagagaagggcattccagatggaggccgcagagtgcgcaaagccgcagaggaaggaaagctca--gggtgtCC-CAGGCAGTCACAGGTGGTGTGCGCAGTGGTGGCTCAGCTGGGCGGGACGGGCCT---CTGGGATGTGTGGGAAGAGCAGC-----------CCTCCCTGCGTGATCCTGATTCTTCTTTCCCAGAAAGGTATGTTCCAGCTCTCCAATGAGGACTACTTCATTGAACCCCTGGATGGTGC-----CGTGGCCCGGCCCGGCCACGCCCAGCCCCACGTGGTGTACAAGCATCAGGCCCTGGAGAGGCCGGCACAGCGGGGTGATTCCATTGCTACAAGCACCTGTGGGGTGCCAGGTATG--CTCCTCTGCTCCCAGTTCTCGGCCAGATGCTG--GGCCTGGAGACG
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       657200 771 +    730879 TTCTCTGGGCAGCCCTGGGCCCAGAGAACTGGATGTCTTGGTGGCAGTGGACAT---CTCCACGCGAGTGTGGGTGTAGATGCTTTTGGAGTGATTCATTGCCTTAGGGAGATAGAGG-GCA--GGTCAGAGGCCCTGGCCAGCTGGGAGGGGGCACCGT-G-CTGGAAACGGCTGGCATGCAGAGGAGATTCAGAATAGCCTGGAGGCCTGGGCACAGGCTGCCCCACTCAGGGCGGCT-TGTGGGACTCTG--GAAGACACCATTTTGTCAGATTTGGATGCAGACCCATTTGCCTCTCCGAATGAGGTgggtgcgtggg-----------------------gcagcatc--cccaggggcg------gaggcttct-----------gagctccgctttgaag-gtttggctgtgtgtggaatggcagagaagggcattccagatggaggccgcagagtgagcaaaggcccagagggaggaaagcgca--gggtgtCC-CCAGCAGTCACAGGTGGTGTGCGCAGTGGGGGCTCAGCTGGGCGGGACTGGCCT---CTGGGACGGGCGGGAAGAGCAGC-----------CCTCCCTGCGTGACCCTGGTTCTTCTTCCCCAGAAAGGTGTGTTCCAGCTCTCCAATGAGGACTACTTCATTGAGCCCCTGGACGGTGC-----cccggcccggcccggccacgcccagcccCATGTGGTGTACAAGCGTCAGGCCCTGGAGAGGCCGGCACAGCGTGGTGATTCCATTGCTACAAGCACCTGTGGGGTGCTAGGTATG--CTCCTCTGCTCCCAGTTCTCGGCCAGGTGCTG--GGCCTGGGGACG
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5760618 733 -  36342412 TTCTCTGGCCGGCCTTAGGCCCAGGGAACAGGATGTCCTGATGGCCATGGGCATCTCTTTGGCCTGGGTGTGGACCAAGCTGCCTTTGGAGTGATTCATCACA-CAAGGAGACTGAGG-GCA--GGTCAGAAG--CTGGCCAGCTAGGAGGGGGCACAGTGG-CTGGAGATGGCTGTCATGCAAAGGAGATGCAAAATAGCCTGGA----------------------CTTAGAATGGCTGCCTGGGACTCTACCGATGAGCCCATTTTGTCATATCTGGATGCAGACCCATTTCTTACTCCTGATGGGGTgggtgtgtgga-----------------------aaagcat----ttgggggca------gtggcttct-----------gagctctactttgaag-ccttcgcc-tgtgtgaaatggaagggtaggatattccaggcagagggtgcagtgtgagcaaaggcCTC---------------------------AGACCAGTCAGCGGTGGTGGGCACAGTGTGGGCTCAG--AGGCAGGACGGGCCT----TGGGATGGGTGGGCAGAGCAGCTGAGAGTCAGCCCTCTCTGTGTGGCCCCGGTGCTTCTTCCCCAGAAAGGTGTATTCCAGCTCTCCAGCGAGGACTACTTCATTGAGCCCCTGGAAGGTGT-----TCCTGCACGGCCTGGCCACGCCCAGCCCCATGTGGTGTATAAGCGCCAAGCACCCGAGAGGCCGGCACAGAGAGGGGATTCTGGCACTCCAGGCACCTGTGGGGTGCAAGGTATG--CTTCTCTGCTGCCAGTTCCAGTGCAGGGAATG--GGCTTAGGATA-
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90173059 763 + 124595110 TTCTCTGGCCAGCTGTGGACTGGAGAAGCAGGATATCTTGGTGGTCATGG-CAACTGGGTGGCTTGGGTGTGACAG-AGCTGCTTTTGAAGTGATTCATTGCCTCAGGGAGACTGAAG-ACGTTGACAAGAAGCAATGGCCAGCTGGGAGGGGGCATGGTGG-CTGGAGAAGATTGGCATTCAAAGGAGATGCAAAACATCCTGGGGGCATGGATATGGGCCACCCAATTCAGGAGGGCCGTCTGGGACTGTG--TAAAATGTCATCTTTTCAGATTCCAATGCAGATCTCTTTCTCCCTCCTAATG----GTGTGTGCTGG-----------------------GCCAAATC--CTTGGAGATGTTTCAAGAGGCTACTAGTAAGGGCTGGAGCTTTGCTTTGAAGCCCTTGGC--TGTGTAGAATGGCAAGGAA----------------------AAAATTAGCAACAGCCGAGAAGGAAGGAGTTGCCCTATCTGTCTATTGTGGGTC-CAGATTGTGGAGGT----GGGGCTCAACTgggcagggcagggcagggcagggGTAGGTGGAAAGGCAAGC-ACGTGCCAGCCCTCCACCGGTAACCCTGGTGAATTTTTCCCAGAGAGGTGTGTTCCAGCTCTCCAATGAGGACTACTTCATTGAGCCTCTGGATGGAGT-----TTCAGCTCAGCCTGGACATGCCCAGCCCCATGTGGTATACAAGCACCAAGGCTCTAGGAAGCAGGCCCAGCAGGGTGACTCAAGGCCTTCAGGCACCTGTGGGATGCAAGGTATGTACCCCCCTGC----------------GGAGTTG--TGTCTGGGGACT
i mm10.chr9                 C 0 I 3
s canFam3.chr3               58190264 750 +  91889043 TGCTCTGG-------CAGGGCCGGGCAGTAGAATGTCCTGGTGACTGTGGGCATCTCAGTGGCTTGGGTGTGGGCAGGGCTGCATTTGGAGTGATTCATCACCTCAGGGAGATCGGGACGCA--GGCCAGGGGC-------------AAGAGGACACAAT-----------GGCTGGCATGCTGAGAAGAGGGAAGATGGTCTGGATGCCC-------CGCTGCCTGACTCAAGGCAGCCATCTGGAACCATGTTGAAGATGCCATCCT---AGATTTAG-CGTGGCTGCATTTCCTGCTCCTAACTGGGTGTGCATGGAGGGGGGGAGGGTAAAGCAGACATGTGGAGCATcctcctgagagta------ctagcttct-----------gagctctgccctgagg-ccttgggc-cgtgtgaaatggccgggaaggccatgcagggcagaaggaacagagtgagcagaggcccagaggggtgaaagcaca---tgtattgggggTTGGTCAGAGGCACTGAGAGC-GTGGGGCCTCAG------------GGACC---GTGGG----GCGGAGGAACCCACTGCAG------CCTTTCCATGTGACCCTGGCGCTTCTT-CCCAGAAAGGTGTGTTCCAGCTTTCCAATGAGGACTACTTCATCGAGCCCCTAGAGGGTGT-----CCCAGCCCGGCCCGGCCATGCCCAGCCGCATGTGGTCTACAAGCGCCAGGCTTCTGAGAGGGAAGCAGCACTGGGTGGTTCCAGGGCCGCAGGCACCTGTGGAGTACAAGGTATG--TGCCTCTGCTGCCAGCTCTGGAGAAAGGGCTGCAGGCATTGGGCT-
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             818510 679 +   1727078 TTCTCTGG---GCTCTGGTTGCGGA---------------GTGGCAACAG-CATCTCCGTGGCTCGAGTATGGGCTGAGCTGCTTTTGAAGCAGTTCCTTGCCTCAGGGAGAGTGAGG-ACA--GGCCAGGGGCTTGGGCCA-CTGGGAGGGAGTACAGT-GACAGGAACCAGCTGGCATGGGAAGGAGATGCGAAATGGCCTGAAGCTGTGGGCGCCACCTGACATGCCCAAGAAGGCTGTTTGGGGCTATGTGGGAGATGCCATCTT-TTAGATTTGAACGTGGACCCAATTCTCActt------------------------------------------------------cctgggagtg------gtggcctct-----------gaactcagccttgagg-----------------------------------------------ttgcagagtgagcagaggcccagttggaggaaagCACA---TATACCAGGGGTCTGCCAAGATTGGTAGGAGCTGGGTGGGCTCAGCCGGGCAGAAAGGGCCC---CTGGAATGGGTGGG-AGAGCAGCTGGGTGCCAACCCTC-CTGGGTGACCCTGGTACTGCTTCCTCAGAAAGGTGTGTTCCAGCTCTCCAGTGAGGACTACTTCATTGAGCCTATGGATGGTGC-----CCCAGCCCGGCCTGGCCGGGCCCAACCCCACGTGGTATACAAGCGCCAAGCCCCAGAGAGGCCAGCAGGACAGGGTGCCTCCAGGGCTCCAGGCACCTGCGGGGTGCAAGGTATG--TCTCTTTGCTGCCAGCTTCGGGGTAGGGGGCA--------------
i dasNov3.JH579681          C 0 C 0

a score=60956.000000
s hg38.chr15_KI270850v1_alt     11237 8 +    430880 TGAAGGGG
s panTro5.chr15              23336878 8 -  83230942 TGAAGGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23033970 8 -  99763055 TGAAGGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2527112 8 +   2806052 TGAAGGGG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22694412 8 - 121039945 TGAAGGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113290335 8 - 169600520 TGAAGGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61582839 8 + 171882078 TGAAGGGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3882760 8 +   4820037 TGAAGGGG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9750201 8 +  10730278 TGAAGGGG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1310949 8 +  24206276 TGAAGGGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3870570 8 +   4030761 TGAAGGGG
i manLeu1.NW_012102632v1    C 0 C 0
s calJac3.chr10             113724285 8 - 132174527 TGAAGGGC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              51888 8 -    125141 TGAAGGGC
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        64942 8 +  11725426 TGAAGGGC
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       657971 8 +    730879 TGATGGGT
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5761351 8 -  36342412 TCCAGAGC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90173825 8 + 124595110 TGGAGACT
i mm10.chr9                 I 3 I 5
s dasNov3.JH579681             819189 1 +   1727078 T-------
i dasNov3.JH579681          C 0 C 0
e canFam3.chr3               58191014 0 +  91889043 C
e colAng1.NW_012114844v1      3997263 251 +   5013933 I

a score=700175.000000
s hg38.chr15_KI270850v1_alt     11245 53 +    430880 CCTTTCTAGAAGCCCCTC---GTAACATGCCCATGCTC---------GGTGTCC--CTTAG-ACCAGA
s panTro5.chr15              23336886 53 -  83230942 CCTTTCTAGAAGCCCCCC---TTAACATCCCCATGCCC---------AGTGCCC--CTTAG-ACCAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23033978 53 -  99763055 CCTTTCTAGAAGCCCCCC---TTAACATCCCCATGCCC---------AGTGCCC--CTTAG-ACCAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2527120 53 +   2806052 CCTTTCTAGAAGCCCCTC---GTAACATGCCCATGCTC---------GGTGTCC--CTTAG-ACCAGA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22694420 54 - 121039945 CCTTTCTAGAAGCCCCCCT--TTAACATCCCCATGCCC---------AGTGCGC--CTTAG-ACCAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113290343 53 - 169600520 CCTTTCTAGAAGCCCCTC---TTAACATCCCCATGCCC---------AGTGCCC--CTTAG-ACCAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61582847 53 + 171882078 CCTTTCTAGAAGCCCCTC---TTAACATCCCCATGCCC---------AGTGCCC--CTTAG-ACCAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3882768 53 +   4820037 CCTTTCTAGAAGCCCCTC---TTAACATCCCCATGCCC---------AGTGCCC--CTTAG-ACCAGG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9750209 53 +  10730278 CCTTTCTAGAAGGCCCTC---TTAACATCCCCATGCCC---------AGTGCCC--CTTAG-ACCAGG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1310957 53 +  24206276 CCTTTCTAGAAGCCCCTC---TTAACATCCCCATGCCC---------AGTGCTC--CTTAG-ACCAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3870578 53 +   4030761 CCTTTCTAGAAGGCCCTC---TTAACATCCCCATGCCC---------AGTGCCC--CTTAG-ACCAGG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3997514 53 +   5013933 CCTTTCTAGAAGCCCCTC---TTAACATCCCCATGCCC---------AGTGCCC--CTTAG-ACCAGG
i colAng1.NW_012114844v1    I 251 C 0
s calJac3.chr10             113724293 53 - 132174527 CCTTTCTAGAAGCTCCTC---TCAACATCCCCATGCCC---------AGCGTCC--CTTAG-ACCAGA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              51896 53 -    125141 CCTTTCTAGAAGCCCCTC---TGAATATCCCCATGCTC---------AGCGTCC--CTTAG-ACCAGA
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        64950 53 +  11725426 GCTTTCTAGAAGCCCCTC---CGAACATCCCCATGCCC---------AGCGTCC--CTTAG-ACCAGA
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       657979 62 +    730879 CCTTTTTAGAAGCCCCTC---TGAGCATCCCCATGCCCAGAGGGCTTAGTGTCC--CTTAG-ACCAGG
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5761359 56 -  36342412 CCTTTCTAGAAGCCCCTT---TCAACATCCCTATGTTC---------AACTCTATGTTCAGTACCAGA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90173838 52 + 124595110 CCTTTCTAGAAACCTCTC---TGAACACCCTCATGCCC---------AGC-TCC--CTTGG-ACTGGA
i mm10.chr9                 I 5 I 232
s canFam3.chr3               58191014 56 +  91889043 CCTTTCCAGAAGCTTCTCTCATCAACATCTCCATGTCC---------AGCTCCC--CTCAG-ACCAAA
i canFam3.chr3              C 0 I 1
s dasNov3.JH579681             819190 51 +   1727078 --CTTCTAAAAGTTCCTC---TCAACATTCCCACACCC---------AGCTCCC--CTCAG-TCCAGA
i dasNov3.JH579681          C 0 I 1

a score=1502367.000000
s hg38.chr15_KI270850v1_alt     11298 148 +    430880 GG-----ATACAGACAGACAGACGGATACATCACTATAGCGTGTGCCCTTAAT-TGTGCCACAAGACTGTGTCCTCTGCCTTTCAGGCCTGTCCCAGTCAGTCCCCTAGACTGACCTCCCTCTCT-CCATCTCACCTACTTCTCCCACCTTGGGG
s panTro5.chr15              23336939 148 -  83230942 TG-----ACACAGACAGACAGATGGATACATTACCATAGCCTGTGCCCTTAAT-TGTGCCACAAGACTGTGTCCTCTGCCTTTCGGACCTGCCCCAGTCAATCCCCTAGACTGACCTTCCTCGCT-CCATCTCACCTACTTCTCCCACGTTGGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23034031 148 -  99763055 TG-----ACACAGACAGACAGATGGATACATTACCATAGCCTGTGCCCTTAAT-TGTGCCACAAGACTGTGTCCTCTGCCTTTCGGACCTGCCCCAGTCAATCCCCTAGACTGACCTTCCTCGCT-CCATCTCACCTACTTCTCCCACGTTGGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2527173 148 +   2806052 GG-----ATACAGACAGACAGACGGATACATCACTATAGCCTGTGCCCTTAAT-TGTGCCACAAGACTGTGTCCTCTGCCTTTCAGGCCTGTCCCAGTCAGTCCCCTAGACTGACTTCCCTCGCT-CCATCTCACCTACTTCTCCCACCTTGGGG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22694474 148 - 121039945 GG-----ACACAGACAGACAGATGGATATATCACCATAGCCTGTGCCCTTAAT-TGTGCCACAAGACTGTGTCCTCTGCCTTTCGGGCCTGCCCCAGTCAATCCCCTAGACTGACCTCCCTCGCT-CCATCTCACCTACTTCTCCCACGTTGGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113290396 144 - 169600520 GG-----ACACAGAT----AGACGGATACATCACCATAGCCTGTGCCCTTAAT-TGTGCCACAAGACTGTGTCCTCTGCCTTTCAGGCCTGCCCCAGTCAGTCCCCCAGACTGATCTCTTTCGCT-CCGTCTCACCTCCTTCTCCCACCTTGGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61582900 148 + 171882078 GG-----ACACAGATAGACAGACGGATACATCACCATAGCCTGTGCCCTTAAT-TGTGCCACAAGACTGTGTCCTCTGCTTTTCAGGCCTGCCCCAGTCAATCCCCTAGACTGACCTCCCTCGCT-CCATCTCACCTACCTCTCCCACCTTGGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3882821 144 +   4820037 GG-----ACACAGAT----AGACGGATACATCACCATAGCCTGTGCCCTAAAT-TGTGCCACAAGACTGTGTCCTCTGCCTTTCAGGCCTGCCCCAGTCAGTCCCCCAGACTGATCTCTTTCGCT-CCGTCTCACCTCCTTCTCCCACCTTGGGG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9750262 148 +  10730278 GG-----ACACAGATAGACAGACGGATACATCACCATAGCCTGTGCCCTTAAT-TGTGCCACAAGACTGTGTCCTCTGCCTTTCAGGCCTGCCCCAATCAATCCCCCAGACTGATCTCCTTTGCT-CCGTCTCACCTCCTTCTCCCACCTTGGGG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1311010 140 +  24206276 GG-----ACACAGATAGACAGACGGATACATCACCATAGCCTGTGCCCTTAAT-TGTGCCACAAGACTGTGTCCTCTGCTTTTCAGGCCTGCCCCAGTCAGT--------CTGATCTCCTTCGCT-CCGTCTCACCTCCTTCTCCCACCTTGGGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3870631 148 +   4030761 GG-----ACACAGATAGACAGACGGATACATCACCATAGCCTGTGCCCTTAAT-TGTGCCACAAGACTGTGTCCTCTGCCTTTCAGGCCTGCCCCAATCAATCCCTCAGACTGATCTCCTTCGCT-CCGTCTCACCTCCTTCTCCCACCTTGGGG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3997567 145 +   5013933 GG-----ACACAGATAGACAGATGGATACATCACCATAGCCTGTGCCCTTAAT-TGTGCCACAAGACTGTGTCCTCTGCCTTTCAGGCCTGCCCCAGTCAATCCCCCACACTGATCTCCTTCGCT-CCGTCTCACCT---TCTCCCACCTTGGGG
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113724346 147 - 132174527 GG-----ACACAGAAAGACAGACGGATCCATCACCATAGCCTGTGCCCTTAAT-TATGTCACAAGACTGTGTCCTCTGCCTTTTGGGCCTGCCCCAGTCAATCCCTCAT-CTGACCTCCCTCGCT-CCATGTCACCTGCCTCTCCGACATTGGGG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              51949 147 -    125141 GA-----ACACAGAAAGACAGACGGATCCGTTACCATAGCCTGTGCCCTTAAT-TATGTCACAAGATTGTGTCCTCTGCCTTTCGGGCCTGCCCCAGTCAATCCCTCAT-CTGACCTCCCTCGAT-CCATGTCACCTGCCTCTTCCACATTGGGG
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        65003 147 +  11725426 GG-----ACACAGAAAGACAGACGGATCCATCACCATAGCCTGTGCCCTTAAT-TATGTCACAAGACTGTGTCCTCTGCCTTTCGGGCCGGCCCTGGTCAATCCCTCAT-CTGACCTCCCTCGCT-CCATGTCACCTGCCTCTCCCACATTGGGG
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       658041 147 +    730879 GG-----ACACAGAAAGACAGACGGATCCGTCACCATAGCCTGTGCCCTTAAT-TATGTCACAAGACTGTGTCCTCTGCCTTTCGGGCCTGCCCCAGGCAATCCCTCAT-CTGACCTCCCTCGCT-CCGTGTCACCTGCCTCTCCCACATTGGGG
i aotNan1.NW_018503093v1    C 0 I 41
s otoGar3.GL873530            5761415 151 -  36342412 GGGAAACAGATGGACAAACAGACAGACACGTTACCATAGCCTGTGACCTTAAA-TGTGCCACGAG-CTATGTCCTCTGCCTGTCAGGTGTGCCCCAGGCAATGCCAGGG-CTGCCCTCCCTCACTCCCACCTCACCAGCTTC-CCCACCTCAGGG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90174122 128 + 124595110 GG-----CCACAAACATTTAAACAGACATACCACCCTAGTCTTTGA--------TGTTCCATTAACCTGTGGCATGGGCTTGACGCTTCTG---CAGGTAG-------GACTAGCCCTCCT-ACT-GCTACTCATCTTCCTTGTCCACGTTGA--
i mm10.chr9                 I 232 C 0
s canFam3.chr3               58191071  61 +  91889043 GG-----ATGCAGAC------------ATATCACCATAGCCCATGCCTTCCACATGCGCCACAGGCCTGAGGCCTCTG-----------------------------------------------------------------------------
i canFam3.chr3              I 1 C 0
s dasNov3.JH579681             819242 125 +   1727078 GG-----ACACAGAGAAACAGAATGACACGTCATCCCAGCCTTAGCCTTCCGCATGTGCCGTGGCCCAGCGGCCTCAGCCT---GGACCTTT------------------CTTGCCTTGCTC----CCACCTCCCCCAACTCCCCTACTTCAGGG
i dasNov3.JH579681          I 1 C 0

a score=1544464.000000
s hg38.chr15_KI270850v1_alt     11446 183 +    430880 CTCAACCTCCCTCTTGCTCCCTCCCCACCAA--GCCTATGGCAC--CTG--GCTCTGCCAGCCATTCTCCCTCCAGTGTCCAGACCAGG-TGAGCCATGCCCAGCTCCAACAGGGCCATTAGCCAGGAACCTC--CCTCCCCA-T-GCCACCCTGCTCCCACCCTAGAATAACTAACCTCTATTATTGGGACCT-
s panTro5.chr15              23337087 184 -  83230942 CTCAGCCTCCCTCT-GCTCCCTCCCCCACAACAGCCTATGGTAC--CTG--GCTCTGCCAACCGTTCTTCCTCCAGTGCCCAGGCCGGG-TGAGCTGTGCCTAGCTCCAACAGGGCCACTAGCCAGGAACTTC--CCTCCCCC-C-ACCACTCTGCTCCCACCCTAGAATAACTAACCTCTATTATTGGGACCT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23034179 183 -  99763055 CTCAGCCTCCCTCT-GCT-CCTCCCCCCCAACAGCCTATGGTAC--CTG--GCTCTGCCAACCGTTCTTCCTCCAGTGCCCAGGCCGGG-TGAGCTGTGACCAGCTCCAACAGGGCCACTAGCCAGGAACTTC--CCTCCCCC-C-ACCACTCTGCTCCCACCCTAGAATAACTAACCTCTATTATTGGGACCT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2527321 183 +   2806052 CTCAGCCTCCCTCTTGCTCCCTCCCCACCAA--GCCTATGGCAC--CTG--GCTCTGCCAGCCATTCTCCCTCCAGTGTCCAGACCAGG-TGAGCCATGCCCAGCTCCAACAGGGCCATTAGCCAGGAACCTC--CCTCCCCA-T-GCCACCCCGCTCCCACCCTAGAATAACTAACCTCTATTATTGGGACCT-
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22694622 183 - 121039945 CTCAGCCTCCCTCT-GCTCCCTCCCCCCCAC-AGCCTATGGTAC--CTG--GCTCTGCCAGCTGTTCTTCCTCCAGTGCCCAGGCCGGC-TGAGCTGTGCCCAGCTCCAACAGGGCCACTAGCCAGGAACTTC--CCTCCCCC-C-ACCACCCTGCTCCCACCCTAGAATAACTAACCTCTATTACTGGGACCT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113290540 162 - 169600520 CTCAACCTCCCTCT-GCTCCCTCCCCCCCAC-AGCCTATGGCAC--CTG--GCTCTGCCAGCCATTCTTCCTCCAG---------------------TGCCCAGCTCCAACAGGGCCACTAGCCAGGAACCTC--CCTCCCTC-C-GCCACCCTGCTCCCACCCTAGAATAACT-ACCTCTATTACTGGGACCT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61583048 184 + 171882078 CTCAACCTGCCTCT-GCTCCCTCCGCCCCAC-AGCCTATGGCAC--CTG--ACTCTGCCAGCCATTCTTCCCTCAGTGCCCAGGCCAGG-TGAGCCATGCCCAGCTCCAACAGGGCCACTAGCCAGGAACCTC--CCTCCCCC-CTACCACCCTGCTCCCACCCTAGAATAACTAACCTCTATTACTGGGACCT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3882965 162 +   4820037 CTCAACCTCCCTCT-GCTCCCTCCCCCCCAC-AGCCTATGGCAC--CTG--GCTCTGCCAGCCATTCTTCCTCCAG---------------------TGCCCAGCTCCAACAGGGCCACTAGCCAGGAACCTC--CCTCCCTC-C-GCCACCCTGCTCCCACCCTAGAATAACT-ACCTCTATTATTGGGAATT-
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9750410 162 +  10730278 CTCAACCTCCCTCT-GCTCCCTCCCCCCCAC-AGCCTATGGCAC--CTG--GCTCTGCCAGCCATTCTTCCTCCAG---------------------TGCCCAGCTCCAACAGGGCCACTAGCCAGGAACCTC--CCTCCCTC-C-GCCACCCTGCTCCCACCCTAGAATAACT-ACCTCTATTATTGGGAATT-
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1311150 184 +  24206276 CTCAACCTCCCTCT-GCTCCCTCCGCCCCAC-AGCCTATGGCAC--CTG--CCTCTGCCAGCCATTCTTCCCCCAGTGCCCAGGCCAGG-TGAGCCATGCCCAGCTCCAACAGGGCCACTAGCCAGGAACCTC--CCTCCCCCAC-ACCACCCTGCTCCCACCCTAGAATAACTAACCTCTATTACTGGGACCT-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3870779 162 +   4030761 CTCAACCTCCCTCT-GCTCCCTCCCCCCCAC-AGCCTATGGCAC--CTG--GCTCTGCCAGCCATTCTTCCTCCAG---------------------TGCCCAGCTCCAACAGGGCCACTAGCCAGGAACCTC--CCTCCCTC-C-GCCACCCTGCTCCCACCCTAGAATAACT-ACCTCTATTATTGGGAATT-
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3997712 162 +   5013933 CTCACCCTCCCTCT-GCTCCCTCCCCCCCAC-AGCCTATGGCAC--CTG--GCTCTGCCAGCCATTCTTCCTCCAG---------------------TGCCCAGCTCCAACAGGGCCACTAGCCAGGAACCTC--CCTCCCTC-C-GCCACCCTGCTCCCACCCTAGAATAACT-ACCTCTATTATTGGGAATT-
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113724493 181 - 132174527 CTTGACCTCCCTCT-GCCCCTGCCCACCCAT-AGCCGATGGCAC--TCG--TCTCTGCCAGCCATTCCTCCTCCAGCACCCAGGCCAGG-TGGGCCCTGCCCAGCTCCAACAGGGCCACTAGCCAGGAACCTC--CCTCCCC--T-GCCACTCTGCTCCCACCC-AGAATAACTGACCTTTATTACTGGGACCC-
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              52096 172 -    125141 CTCGACCTCCCTCT-GCCCCCGCCC--------GCCTATGGCAC--TTG--GCTCTGCCAGCCATT-CTCCTCCATCGCCCAGGCCGGG-TGGGCCCTGCCCAGCTCCAATAGGGCCACTAGCCAGGAACCTC--CCTCCCC--T-G-CACCTGGCTCCCACCC-AGAATAACTGACCTTTATTACTGGGACCT-
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        65150 181 +  11725426 CTCGACCTCCCTCT-GCCCCCGCCCGCCCAT-AGCCTATAGCAC--TCG--GCTCTGCTAACCATTCCTCCTCCAGCGCCCAGGCCGGG-TGGGCCCTGCCCAGCTCCAACAGGGCCATTAGCCAGGAACCTC--CCTCCCC--T-GCCACCCTGCTCCCACCC-GGAGTAACTGACCTCTATTACTGGGACCT-
i cebCap1.NW_016107334v1    C 0 C 0
s otoGar3.GL873530            5761566 159 -  36342412 TTCCATCCTCCTCT-GCTCCTCCCCACCTTT--GCCTGTGGCACCTCTG--ACTCTATTA--CATTCTTCCTGCTG---------------------TGTCTAGGCCCAGCAGGGCCATTGGCTAGGATCCCT--CTTTCTCC-C---TACCCTGCTCCCATGC-AGAGTAATTGACCTCTGTGGTTGAGAGCT-
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90174250 172 + 124595110 --TAA--TTCCTCT-ACTCTCTCTACATATT--GCTTATGGTGTCTCTG--ACTCCGTCAATCATTCTTTCTCCAG-----TGGTTGGG-CTGCCTATAGTCAGTTCTAGCAGGGATACTGGTAAGGACCCTCTGCCTCTCTC-T------CCTGCTTTGACTCCAGACTAACCAACCTGTACTATTGGGGCCT-
i mm10.chr9                 C 0 I 3080
s canFam3.chr3               58191132 150 +  91889043 ---------CCTCT-GC-----CTTACTCAC-TGCCTACCACAC--CTGCAGCTCTGTTGGCCATTCTTCCTTGGG---------------------TGGCCGGG-CCATCAGAGCAGCTAGCCAGGAACGTC--CCTCCCTT-C-CCTGCTCTGGCCCCAGCCCAGAATAGGTGAGCTCTGTTACTGGAGACA-
i canFam3.chr3              C 0 I 1
s dasNov3.JH579681             819367 167 +   1727078 CTCGGTCTCTCCCT-GCT----------CAT-TGCCTG-GGCACCCCCA--GCTCTACCAGCCATT---CCTCCAGTGTCCAGGCAGAGCCAGGCTGTGTCCAGCCCTAGCCAGGCAA-----CAGGAACCTC--CCTACCCT-C-CCCACCC-GCTCTCACCCTGGAATAGCCAACCCCCATGAGTGGGGACCT
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       658188  41 +    730879 I

a score=1266670.000000
s hg38.chr15_KI270850v1_alt     11629 121 +    430880 GGAGTGTGGTACCCAGTGCCTCCTCTGCAGAGCAGCAGTAGTGCCGGCCAGTCCAGGTGAAGAGCTGCCTGCTAAGGGTTGCTGGGATTTGGGGAATGCTTGGCTGGCATGCC-AATCTC--AG
s panTro5.chr15              23337271 121 -  83230942 GGAGTGTGGTACCCAGTGCCTCCTCTGCAGAGCAGCAGTAGTGCCAGCCAGTCCAGGTGAGGAGCTGCCTCCTAAGGGTTGCTGGGGTTTGGGGAATGCTTGGCTGGCAAGCC-AATCTC--AG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23034362 121 -  99763055 GGAGTGTGGTACCCAGTGCCTCCTCTGCAGAGCAGCAGTAGTGCCAGCCAGTCCAGGTGAGGAGCTGCCTCCTAAGGGTTGCTGGGGTTTGGGGAATGCTTGGCTGGCAAGCC-AATCTC--AG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2527504 121 +   2806052 GGAGTGTGGTACCCAGTGCCTCCTCTGCAGAGCAGCAGTAGTGCCAGCCAGTCCAGGTGAGGAGCTGCCTGCTAAGGGTTGCTGGGGTTTGGGGAATGCTTGGCTAGCAAGCC-AATCTC--AG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22694805 121 - 121039945 GGAGTGTGCTACCCAGTGCCTCCTCTGCAGAGCAGCAGTAGTGCCGGCCAGTCCAGGTGAGGAGCTGCCTGCTAAGGGTTGCTGGGGTTTGGGAAATGCTTGGCTGGCAAGCC-AATCTC--AG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113290702 121 - 169600520 GGAGTGTGGTACCCAGTGCCTCCTCTGCAGAGCAGCAGCAGTGCTGGCCAGTCCAGGTGAGGAGCTGCCTGCTAAGGGTTGCTAGGGTTTGGGGAATGTTTGGCTGGCATGCC-AATCTC--AA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61583232 121 + 171882078 GGAGTGTGGTACCCAGTACCTCCTCTGCAGAGCAGCAGCAGTGCTGGCCAGTCCAGGTGAGGAGCTGCCTGCTAAGGGTTGCTAGGGTTTGGGGAATGCTTGGCTGGCATGCC-AATCTC--AA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3883127 121 +   4820037 GGAGTGTGGTACCCAGTGCCTCCTCTGCAGAGCAGCAGTAGTGCTGGCCAGTCCAGGTGAGGAGCTGCCTGCTAAGGGTTGCTAGGGTTTGGGGAATGTTTGGCTGGCATGCC-AATCTC--AA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9750572 121 +  10730278 GGAGTGTGGTACCCAGTACCTCCTCTGCAGAGCAGCAGCAGTGCTGGCCAGTCCAGGTGAGGAGCTGCCTGCTAAGGGTTGCTAGGGTTTGGGGAATGTTTGGCTGGCATGCC-AATCTC--AA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1311334 121 +  24206276 GGAGTGTGGTACCCAGTACCTCCTCTGCAGAGCAGCAGCAGTGCTGGCCAGTCCAGGTGAGGAGCTGCCTGCTAAGGGTTGCTAGGGTTTGGGGAATGCTTGGCTGGCATGCC-AATCTC--AA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3870941 121 +   4030761 GGAGTGTGGTACCCAGTACCTCCTCTGCAGAGCAGCAGCAGTGCTGGCCAGTCCAGGTGAGGAGCTGCCTGCTAAGGGTTGCTAGGGTTTGGGGAATGTTTGGCTGGCATGCC-AATCTC--AA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3997874 121 +   5013933 GGAGTGTGGTACCCAGTGCCTCCTCTGCAGAGCAGCAGTAGTGCTGGCCAGTCCAGGTGAGGAGCTGCCTGCTAAGGGTTGCTGGTGTTTGGGGAATGTTTGGCTGGCATGCC-AATCTC--AA
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113724674 105 - 132174527 AGA----------------GTCTCCTGCAGAGCGGCAATAGTGCCAGCTGGCCCAGGTGAGGAGCTGCTCACTAAGGGTTGCTGGGGCTTGGGCAATGCTCCCCTGGCATGCC-AACCTC--AA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              52268 122 -    125141 GGAGCGTGGTACCCAGAGCGTCCTCTGCAGAGCAGCAGTAGTGCTAGGCAGTGCAGGTGAGGAGCTGCCCGCTAAGGGTTGCTGGGGCTTGGGGAATGCTCGCCTGGCATGCCAAACCTC--AA
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        65331 121 +  11725426 GGAGTGCAGGACCCAGAGCCTCCTCTGCAGAGCGGCAGTAGTGCCAGACAGTGCGGGTGAGGAGCTTCCCACTAAGGGTTGCTGGGGATTGGGGAGTGTTCGCCTGGCATGCC-AACCTC--AA
i cebCap1.NW_016107334v1    C 0 C 0
s otoGar3.GL873530            5761725 102 -  36342412 GGAGCGTGATATCCAGCGCCTCCCCTGGAGA-TGGCAGTAGTG-------GTCCCGGTGAGGAGCTTCCCACTAAGAGTTGCTGGGGTTTGGGGACTACT-----------CC-AGCCTC--AG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58191283 112 +  91889043 --AGCA------CCAGCACCTCTTCTGCAGAGCCAC---ATTGCTGGCCAGTCCAGATGAGGAGCTGCCCACGAAGGGCCGCAGGGGTCTGGGGGCTGCTTGGCCAGCATGCC-AGCCTCAGAA
i canFam3.chr3              I 1 C 0
s dasNov3.JH579681             819534 119 +   1727078 AGAGCACAGTTCCCAGCACTTTTTCTGCAGAGCAGCTTGAGTACTGGCCAGGCCAGGGAAGTAGCTGCCCAATAAAGGTTGCTGGGGCTTGGGGACTGC--AGCTGGTACCCC-AGCCTC--AG
i dasNov3.JH579681          C 0 I 4
e aotNan1.NW_018503093v1       658188  41 +    730879 I
e mm10.chr9                  90174422 3080 + 124595110 I

a score=1846175.000000
s hg38.chr15_KI270850v1_alt     11750 198 +    430880 GCTGCCCACAGCTCTGGTACTCCATTTGCTGGAGCACATATCCACAGAGGCATGCTTCTTGGCCTCATTTTCCCCAGCTTCATAGATGTGCTTCCTCTTCTGATCTGGAGCAGCCTGGGTCAGGGGAGCAGGCTCAGTAGGGCAAGCTGGGCTGGGTCTTGGCCAGCCTCCCCAGGCTGGGGTTTAGAGGGTGGGGTC
s panTro5.chr15              23337392 198 -  83230942 GCTGCCCACAGCTCTGGTACTGCATTTGCTGGAGCACATATCCACAGAGGCGTGCTTCTTGGCCTCAGTTTCCCCAGCTTCATAGATGTGCTTCCTCTTCTGATCTGGAGCAGCCTGGGTCAGGGGAGCAGGCCCAGTAGGGCAAGCTGGGCTGGGTCTTGGCCAGCCTCCCCAGGCTGGGGTTTAGAGGGTGGGGTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23034483 198 -  99763055 GCTGCCCACAGCTCTGGTACTGCATTTGCTGGAGCACATATCCACAGAGGCGTGCTTCTTGGCCTCAGTTTCCCCAGCTTCATAGATGTGCTTCCTCTTCTGATCTGGAGCAGCCTGGGTCAGGGGAGCAGGCCCAGTAGGGCAAGCTGGGCTGGGTCTTGGCCAGCCTCCCCAGGCTGGGGTTTAGAGGGTGGGGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2527625 197 +   2806052 GCTGCCCACAGCTCTGGTACTGCATTTGCTGGAGCACATATCCACAGAGGCATGCTTCTTGGCCTCATTTTCCCCAGCTTCATAGATGTGCTTCCTCTTCTGATCTGGAGCAGCCTGGGTCAGGGGAGCAGGCTCACTAGGGCAAGCTGGGCTGGGTCTTGGCCAGCCTCCCCAGGCTGGGGTTTAGAGGGT-GGGTC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22694926 198 - 121039945 GCTGCCCACAGCTGTGTTACTCCATTTGCTGGAGCACATATCCACAGAGGCATGCTTCTTGGCCTCAGTTTCCCCAGCTTCATAGATGTTCCTTCTCTTCTGATCTGGAGCAGCCTGGGTCAGAGGAGCAGGCCCAGTAGGGCAAGCTGGGCTGGGTCTTGGCCAGCCTCCCCAGGCTGGGGTTTAGAGGGTGGGGTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113290823 198 - 169600520 GTTGCCCACAGCTCTGGTCCTCTATTTGCTGGAGCACATATCCACGGAAGCATGCTTCTTGGCCTCAGTTTCCCCAGCTTCATAGATGTGCTTCCTCTTCTGATCTGGAGCAGCCTGGGTCAGGGGAGCAGGCCCAGTAGGGCCAGCTGGGCTGGATCTTGGCCAGCTTCCTCAGGCTGGGGTTTAGAGGGTGAGGTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61583353 197 + 171882078 CCTGCCCACAGCTCTGGTACTGCATTTGCTGGAGCACATATCCACAGAGGTATGCTTCTTGGCCTCAGTTTCCCCAGCTTCTTAGATGTGCTTCCTCTTCTGATCTGGTGCAGCCTGGGTC-GGGGAGCAGGCCCAGTAGGGCCAGCTGGGCTGGGTCTTGGCCAGCCTCCCATGGCTGGGGTTTAGAGGGTGGGGTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3883248 198 +   4820037 GTTGCCCACAGCTCTGGTCCTCTATTTGCTGGAGCACATATCCACGGAAGCATGCTTCTTGGCCTCAGTTTCCCCAGCTTCACAGATGTGCTTCCTCTTCTGATCTGGAGCAGCCTGGGTCAGGGGAGCAGGCCCAGTAGGGCCAGCTGGGCTGGATCTTGGCCAGCTTCCTCAGGCTGGGGTTTAGAGGGTGAGGTC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9750693 198 +  10730278 GTTGCCCACAGCTCTGGTCCTCTATTTGCTGGAGCACATATCCACGGAAGCATGCTTCTTGGCCTCAGTTTCCCCAGCTTCATTGATGTGCTTCCTCTTCTGATCTGGAGCAGCCTGGGTCAGGGGAGCAGGCCCAGTAGGTCCAGCTGTGCTGGATCTTGGCCAACTTCCTCAGGCTGGGGTTTAGAGGGTGAGGTC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1311455 198 +  24206276 CCTGCCCACAGCTCTGGTACTGCATTTGCTGGAGCACATATCCACAGAGGTATGCTTCTTGGCCTCAGTTTCCCCAGCTTCTTAGATGTGCTTCCTCTTCTGATCTGGCGCAGCCTGGGTCAGGGGAGCAGGCCCAGTAGGGCCAGCTGGGCTGGGTCTTGGCCAGCCTCCCCTGGCTGGGGTTTAGAGGGTGGGGTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3871062 198 +   4030761 GTTGCCCACAGCTCTGGTCCTCTATTTGCTGGAGCACATATCCACAGAAGCATGCTTCTTGGCCTCAGTTTCCCCAGCTTCATAGATGTGCTTCCTCTTCTGCTCTGGAGCAGCCTGGGTCAGGGGAGCAGGCCCAGTAGGGCCAGCTGGGCTGGATCTTGGCCAGCTTCCTCAGGCTGGGGTTTAGAGGGTGAGGTC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3997995 198 +   5013933 GTTGCCCACAGCTCTGGTCCTCTATTTGCTGGAGCACATATCCACAGAAGCATGCTTCTTGGCCTCAGTTTCCCTAGCTTCATAGATGTGCTTCCTCTTCTGATCTGGAGCAGCCTGGGTCAGAGGAGCAGGCCCAGTAGGGCCAGCTGGGCTGGATCTTGGCCAGCTTCCTCAGGCTGGGGTTTAGAGGGTGAGGTC
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113724779 192 - 132174527 GCTGCCCACAGCTCTGGTACTCTATTTGCTGGAACACAGATCCACAGAGGCATGCTTCTTGGCCTCAGTTTCCCCAGCTTCATAGATGTGCTTCCTCTTCTGATCTGGAGCTGCCTTGGTGCGGGGAGCAGGCCCAGT------AGCTGGGCTGGGTGGTGGCCAGCCTCCCCAGGCCGGGGTTTTGAGGGCGGGATC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              52390 198 -    125141 GCTGCCCACAGCTCTGGTACTCTATTTGCTGGAGCACAGATCCACAGAGGCATGCTTCTTGGCCTCAGTTTCCCCACCTTCATAGATGTGCTTCCTCTTCTGATCTGGAGCAGCCTGGGTGAGGGGAGCAGGCCCAGTAGGGCCAGCTGGGCTGGGTGGTGGCCATCCTCCCCAGGCTGGGGTTTTGAGGGTGGGATC
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        65452 177 +  11725426 GCTGCCCACAGCTGTGGC---------------GCACAGATCCACAGAGGCATGCTTCTTGGCCTCAGTTTCCCCACCTTCATAGATGTGCTTCCTCTTCTGATCTGGAGCAGCCTGGGTGAGGGGAGCAGGCCCAGT------AGCTGGGCTGGGTGGTGGCCAGCCACCCCAGGCTGGGGTTTTGAGGGTGGGATC
i cebCap1.NW_016107334v1    C 0 I 22
s otoGar3.GL873530            5761827 172 -  36342412 GCTGCCCACAGCTCAGGGGCTCTGTTTGCT-GAGCAGATCCCCAGGGAGGCATGCTTGTTGGCCTCAGTTTCTCCAGCTTCACAGATGTACTTCCTCTTCT----TGGGG-------GATCAGAGG-GCAAGCC------------CCAGGCTGGACCTTGGCGAGCCTCC-CAGCCTGGTGGTTGGACTATGGGGTC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58191395 147 +  91889043 GCTG-CCATAGCTCAGTGACTTTATTCATGGGAACA-GTATCCA--GAGTTGGGCTTCTGGGCCCCAGTCTTCCTGGCTTCT--------------------GTCTGGGGTGGCTTAGA-CAGGGGAACAGGCCT-------CCAGTGGGGATGG------------CCTCCCAGGCAGGGCCCT-------GGGGTC
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503093v1       658188  41 +    730879 I
e mm10.chr9                  90174422 3080 + 124595110 I
e dasNov3.JH579681             819653   4 +   1727078 I

a score=139638.000000
s hg38.chr15_KI270850v1_alt     11948 26 +    430880 AGGGGTCAGTGTTGAGATGCACTAA-G
s panTro5.chr15              23337590 23 -  83230942 A---GCCTGTGTTGGGATGCACTGA-C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23034681 24 -  99763055 A---GCCTGTGTTGGGATGCACTGACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2527822 26 +   2806052 AGGGGTCAGTGTTGAGATGCACTAA-G
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22695124 23 - 121039945 A---GCCTGTGTTGGGATGCACTAA-C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113291021 23 - 169600520 A---GCCTGTGTTGGGATGTACTAA-C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61583550 23 + 171882078 A---GCCTGTGTTGGGATGTACTAA-C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3883446 23 +   4820037 A---GCCTGTGTTGGGATGTACTAA-C
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9750891 23 +  10730278 A---GCCTGTGTTGGGATGTACTAA-C
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1311653 23 +  24206276 A---GCCTGTGTTGGGATGTACTAA-C
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3871260 23 +   4030761 A---GCCTGTGTTGGGATGTACTAA-C
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3998193 23 +   5013933 A---GCCTGTGTTGGGATGTACTAA-C
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113724971 22 - 132174527 ---TGCCTGTGCTGGGGTATACTAA--
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              52588 22 -    125141 ---TGCCTGTGCTGGGATACGCTAA--
i saiBol1.JH378378          C 0 C 0
s otoGar3.GL873530            5761999 22 -  36342412 ---TGCATGTGCTGGGATTCACTAA--
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58191542 22 +  91889043 ---CACCTGTGTGGGGATCTGCCAA--
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503093v1       658188 41 +    730879 I
e mm10.chr9                  90174422 3080 + 124595110 I
e dasNov3.JH579681             819653  4 +   1727078 I
e cebCap1.NW_016107334v1        65629 22 +  11725426 I

a score=36624.000000
s hg38.chr15_KI270850v1_alt     11974 3 +    430880 CCC
s panTro5.chr15              23337613 3 -  83230942 CCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23034705 3 -  99763055 CCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2527848 3 +   2806052 CCC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22695147 3 - 121039945 CCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113291044 3 - 169600520 CCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61583573 3 + 171882078 CCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3883469 3 +   4820037 CCC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9750914 3 +  10730278 CCC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1311676 3 +  24206276 CCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3871283 3 +   4030761 CCC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3998216 3 +   5013933 CCC
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113724993 3 - 132174527 CCC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              52610 3 -    125141 CCC
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        65651 3 +  11725426 CCC
i cebCap1.NW_016107334v1    I 22 C 0
s otoGar3.GL873530            5762021 3 -  36342412 CTC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58191564 2 +  91889043 -CC
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503093v1       658188 41 +    730879 I
e mm10.chr9                  90174422 3080 + 124595110 I
e dasNov3.JH579681             819653 4 +   1727078 I

a score=2909028.000000
s hg38.chr15_KI270850v1_alt     11977 278 +    430880 CCAGGGTGGGAGGAAGTGACACGGGGAGATAGGGGCCCAGTAGCCAGCTTTGTCAAGCCCAGGAGTTCCCCTCCCATGGACACAgtactttactgcgtttatatccaccatttcatttaccctttgaggtccccccatgaggcagatcaacttattcctatttttagtcagggaatctcaagatcaaagaaagaaagtggtcag-g-cagagccacacagcacaggtttggggcagagccaggaggggaattcaggcccctcgcctctgatccctgtgtg
s panTro5.chr15              23337616 273 -  83230942 CCAGGGTGGGAGGAAGTGACACGGGGAGATAGGGGCCCAGTTGCCAGCTTTGTCAGGCCCAGGAGTTcccctcccatggacacagtactttactgtgtttatatccaccatttcatttgccctttgaggtccccctgtgagg-----caatttattcctatttttagtcagggaatctcaagatcagaaaaggaaagtgaccag-g-cagagccacacagcacagatctggggcagagccaggaggcgaattcaggcccctggcctctgatccctgtgtg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23034708 273 -  99763055 CCAGGGTGGGAGGAAGTGACACGGGGAGATAGGGGCCCAGTTGCCAGCTTTGTCAGGCCCAGGAGTTcccctcccatggacacagtactttactgtgtttatatccaccatttcatttgccctttgaggtccccctgtgagg-----caatttattcctatttttagtcagggaatctcaagatcagaaaaggaaagtgaccag-g-cagagccacacagcacagatctggggcagagccaggaggcgaattcaggcccctggcctctgatccctgtgtg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2527851 278 +   2806052 CCAGGGTGGGAGGAAGTGACACGGGGAGATAGGGGACCAGTAGCCAGCTTTGTCAGGCCCAGGAGTTCCCCTCCCATGGACACAgtactttactgcatttatatccaccatttcatttaccctttgaggtgcccccatgaggcagatcaacttattcctatttttagtcagggaatctcaagatcaaagaaggaaagtggtcag-g-cagagccacacagcacaggtttggggcagagccaggaggggaattcaggcccctcacctctgatccctgtgtg
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22695150 273 - 121039945 CCAGGGTGGGAGGAAGTGACACGGGGAGATAGGGGCCCAGTTGCCAGTTTTGTCAGGCCCAGGAGTTcccctcccatggacacagtactttaccgtgtttatatccgccatttcatttgccctttgaggtccccctgtaagg-----caacttattcctatttttagtcagggaatctcaagatcagagaaggaaagcgaccag-g-cagagccacacagcacagatctggggcagagccaggaggggaattcaggcccctcgcctctgatccctgtgtg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113291047 278 - 169600520 CTAAGAGGGGAGGAAGTGACACAGGGAGATAGGGGCTCAGTTGCCAGCTTTGTCAGGCCCAGGAGTTcccctcccatggacacagtaatttactgtgtttatatccaccatttcatttgccctttgaggtccccctgtgaggcagatcaacttattcctatttttagttagggaatctcaagatgagagaaggaaggtgaccag-g-cagagccacacagcacagatctggggcagagccaggaggagaattcaggcccctggcctctgatctcagtgtg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61583576 278 + 171882078 CCAGGGTGGGAAGAAGTGACACAGGGAGATAGGGGCCCAGTAGCCAGTTTTGTCAGGCCCAGGAGTTCCCCTCCCATGGACACAgtactttactgtgtttatatccaccatttcatttgccctttgaggtccccctgcgaggcagatcaacttattcctatttttagtcagggaatctcaagatcaaagaaggtaagtgaccag-g-cagagccacacagcacaggtctggggcagagccaggaggggaattcaggtccctggcctctgatccctgtgtg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3883472 278 +   4820037 CCAAGAGGGGAGGAAGTGACACAGGGAGATAGGGGCTCAGTTGCCAGCTTTGTCAGGCCCAGGAGTTcccctcccatggacacagtactttactgtgtttatatccaccatttcatttgccctttgaggtccccctgtgaggcagatcaacttattcctatttttagttagggaatctcaagatgagagaaggaaggtgaccag-g-cagagccacacagcacagatctggggcagagccaggaggagaattcaggcccctggcctctgatctcagtgtg
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9750917 278 +  10730278 CCAAGAGGGGAGGAAGTGACACAGGGAGATAGGGGCTCAGTTGCCAGCTTTGTCAGGCCCAGGAGTTcccctcccatggacacagtactttactgtgtttatatccaccatttcatttgccctttgaggtccccttgtgaggcagatcaacttattcctatttttaggtagggaatctcaagatgagagaaggaaggtgaccag-g-cagagccacacagcacagatctggggcagagccaggaggagaattcaggcccctggcctctgatctcagtgtg
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1311679 278 +  24206276 CCAGGGTGGGAAGAAGTGACACGGGGAGATAGGGGCCCAGTAGCCAGTTTTGTCAGGCCCAGAAGTTCCCCTCCCATGGACACAgtactttactgtgtttatgtccaccatttcatttgccctttgaggtccccctgtgaggcagatcaacttattcctatttttagtcagggaatttcaagatcaaagaaggtaagtgaccag-g-cagagccacacagcacaggtctggggcagagccaggaggggaattcaggcccctggcctctgatccctgtgtg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3871286 278 +   4030761 CCAAGAGGGGAGGAAGTGACACAGGGAGATAGGGGCTCAGTTGCCAGCTTTGTCAGGCCCAGGAGTTcccctcccatggacacagtactttactgtgtttatatccaccatttcatttgccctttgaggtccccctgtgaggcagatcaacttgttcctatttttagttagggaatctcaagatgagagaaggaaggtgaccag-g-cagagccacacagcacagatctggggcagagccaggaggagaattcaggcccctggcctctgatctcagtgtg
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3998219 278 +   5013933 CCAAGAGGGGAGGAAGTGACACAGGGAGATAGGGGCCCAGTTGCCAGCTTTGTCAGGCCCAGGAGTTcccctaccatggacacagtactttaccgtgtttatatccaccatttcatttgccctttgaggtccccctgtgagacagatcaacttattcctatttttagttagggaatctcaagatcagagaaggaaggtgaccag-g-cagagccacacagcacaggtctggggcagagccaggaagagaattcaggcccctgacctctgatctcagtgtg
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113724996 266 - 132174527 CCAGGGTGGGA-GAAGTGACACGGGGCGATA-GGGCCCAGGTGCCAGCTTTGTCAGGCCCAGGAGTTCTTCTCCCACGGACACATGACTTTATTGTGtttatatccaccatttcattt----------gtcaccctctgaggcagatcaacttattcctatttttagtcagagaatctcaagatcagagaaggcaagggaccag-g-cagagccacacagcacgggtctggggcagagccaggaggggaatccaggaccctcgcctctgatcccagtgtg
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              52613 267 -    125141 CTAGGGTGGGA-GAAGTGACACAGGGCGCTAGGGGCCCAGGTGCCAGCTTTGTCAGGCCCAGGAGTTCCCCTCCCATGGACACATGACTTTACCATGtttatatccaccatttcattt----------gtcagcctctgaggcagatcaacttattcctatttttagtcagagaatctcaagatcagagaaggaaagggaccag-g-cagagccacacagcacaggtctggggcagagctaggaggggaatccaggaccctcgcctctgatcccagtgcc
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        65654 267 +  11725426 CCAGGGTGGGA-GAAGTGACACGGGGCGCTAGGGGCCCAGGTGCCAGCTTTGTCAGGCCCAGGAGTTCCCCTCCCATGGACACATGactttgccatgtttatatccaccatttcattt----------gtcactctctgaggcagatcaacttattcctatttttagtcagagaatctcaagatcagagaaggaaagggaccag-g-cagagccacacagcacaggtctggggcagagccagcaggggaatccaggaccctcgcttctgatcccagtgtg
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       658229 267 +    730879 CCAGGGTGGGA-GAAGTGACACGGGGTGACAGGGGCCCAGGTGCCAGCTTTGTCAGGCCCAGGAGTTCCCCTCCCACGGACACCTGACTTTACCATGtttatatccaccatttcgttt----------gtcaccctctgagtcagatcaacttattcctatttttagtcagagaatctcaagatcagagaaggaaagggaccag-g-cagagccacacagcacaggtctggggcagagccaggaggggaatccaggaccctcgcctctgatcccagtgcg
i aotNan1.NW_018503093v1    I 41 C 0
s otoGar3.GL873530            5762024 252 -  36342412 CCAGTGGGGGAGGGAATGACATAGGG----------CCTGCTACAGGCGCTATCAGACCTGGAAGCTCTCCTCACACAGACATGGTCCTTTACTATGtttatacccagcatctcatttgcctccggaggtcaccctatgagggagatcagcttattcctgtttatcgtt-gtggatcccaagatcagagaaaaaaagtgactgg-gccaaggccacacagc-tagGTCTGGAGC---------------ATCCATGCTCCTCACCTCTGGTCCCAGGGCA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58191566 226 +  91889043 CCAGGG-GACAGGGAGCAACAC-TGGAGATGG-----------------------GGCCCAGGAGCTCCT-------------------------TGttcacatctactgtttca-ttgcaccccaagggcatcctctgaggctccttggctgattgctgtttatagtcggggatgctccgggtcagaggagggacgtgaccagag-cagggtcacacagcccaggtctggggcagagccacagtgggtgtcctggcagcttgc-tctgacccc-gcact
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90174422 3080 + 124595110 I
e dasNov3.JH579681             819653   4 +   1727078 I

a score=572647.000000
s hg38.chr15_KI270850v1_alt     12255 55 +    430880 gttcccagtgcccc--aGAGAACTCGCTGAGGAGAAGCCCTGGAGACGTGTGCCCTG
s panTro5.chr15              23337889 57 -  83230942 gttcccagtgccccaGAGAGAGCTCACTGAGGAGAGGCCCTGGAGACGTGTGCCCTG
i panTro5.chr15             C 0 I 3040
s panPan2.chr15              23034981 57 -  99763055 gttcccagtgccccaGAGAGAGCTCACTGAGGAGAGGCCCTGGAGACGTGTGCCCTG
i panPan2.chr15             C 0 I 3026
s gorGor5.CYUI01000037v1      2528129 55 +   2806052 gttcccagtgcccc--aGAGAACTCGCTGAGGAGAAGCCCTGGAGACGTGTGCCCTG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22695423 57 - 121039945 gttcccagtgccccaGAGAGAGCTCACTGAGGAGAGGCCCTGGAGACGTGTGCCCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113291325 55 - 169600520 gttcccagtgccccaGAGAGAGCT--CTGAGGAGAGTCCCTGGAGACATGTGCCCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61583854 55 + 171882078 gttcctaatgccccaGAGAACTTG--CTGAGGAGAGACCCTGGAGACATGTGCCCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3883750 55 +   4820037 gttcccagtgccccaGAGAGAGCT--CTGAGGAGAGTCCCTGGAGACATGTGCCCTG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9751195 57 +  10730278 gttcccagtgccccaGAGAGAGCTCACTGAGGAGAGGCCCTGGAGACATGTGCCCTG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1311957 55 +  24206276 gttcctagtgccccaGAGAACTTG--CTGAGGAGAGACCCTGGAGACATGTGCCCTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3871564 43 +   4030761 gttcccagtgccccaGA--------------GAGAGGCCCTGGAGACATGTGCCCTG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3998497 56 +   5013933 gttcccagtgccccaGAGAGAGCTCACTGAGGAGAGG-CCTGGATACATGTGCCCTG
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113725262 57 - 132174527 gttcccagtgccccaGAAAGAGCTCGCTGTGGAGGGGCCCTGGAGACATGTGCCCTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              52880 57 -    125141 gttcccagtgccccaGAAAGAGCTCGCTGAGGAGAGGCCCTGGAGACACGTGCCCTG
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        65921 57 +  11725426 gttcccagtgccccaGAAAGAGCTCGCTGTGGAGAGGCCCTGGAGACACGTGCCCTG
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       658496 57 +    730879 gttcccagtgccccaGAAAGAGCTCGCTGAGGAGAGGCCCTGGAGACACGTGCCCTG
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5762276 49 -  36342412 GTTCCTGTTGCTCCAGACGGGGCTTGGTGAGGAGAG--------GGTGTGTGCCCAG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58191792 52 +  91889043 gttccctcggcccca-AGTGAGCT-GCTGAGCGGGGGCCTT---GAGATGCACCCTC
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             819657 55 +   1727078 GCTTCTGCTGCCTCAGAGAAACTC--CTGAGGAGAGGCCCTTGAGATAGGTGTGCTG
i dasNov3.JH579681          I 4 I 2380
e mm10.chr9                  90174422 3080 + 124595110 I

a score=17100.000000
s hg38.chr15_KI270850v1_alt     12310 1 +    430880 G
s panTro5.chr15              23340986 1 -  83230942 G
i panTro5.chr15             I 3040 C 0
s panPan2.chr15              23038064 1 -  99763055 G
i panPan2.chr15             I 3026 C 0
s gorGor5.CYUI01000037v1      2528184 1 +   2806052 G
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22695480 1 - 121039945 G
i nomLeu3.chr6              C 0 I 3039
s rheMac8.chr7              113291380 1 - 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61583909 1 + 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3883805 1 +   4820037 G
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9751252 1 +  10730278 G
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1312012 1 +  24206276 G
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3871607 1 +   4030761 G
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      3998553 1 +   5013933 G
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113725319 1 - 132174527 G
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              52937 1 -    125141 G
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        65978 1 +  11725426 G
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       658553 1 +    730879 G
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5762325 1 -  36342412 G
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58191844 1 +  91889043 G
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             822092 1 +   1727078 G
i dasNov3.JH579681          I 2380 C 0
e mm10.chr9                  90174422 3080 + 124595110 I

a score=29737.000000
s hg38.chr15_KI270850v1_alt     12311 2 +    430880 GC
s panTro5.chr15              23340987 2 -  83230942 GC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23038065 2 -  99763055 GC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2528185 2 +   2806052 GC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22698520 2 - 121039945 GC
i nomLeu3.chr6              I 3039 C 0
s rheMac8.chr7              113291381 2 - 169600520 GC
i rheMac8.chr7              C 0 I 3034
s macFas5.chr7               61583910 2 + 171882078 GT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3883806 2 +   4820037 GC
i macNem1.NW_012011533v1    C 0 I 3035
s cerAty1.NW_011999477v1      9751253 2 +  10730278 GC
i cerAty1.NW_011999477v1    C 0 I 3054
s chlSab2.chr29               1312013 2 +  24206276 GT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3871608 2 +   4030761 GC
i manLeu1.NW_012102632v1    C 0 I 3044
s colAng1.NW_012114844v1      3998554 2 +   5013933 GC
i colAng1.NW_012114844v1    C 0 I 3010
s calJac3.chr10             113725320 2 - 132174527 GC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              52938 2 -    125141 GC
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        65979 2 +  11725426 GC
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       658554 2 +    730879 GC
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5762326 2 -  36342412 GC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58191845 2 +  91889043 GC
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             822093 2 +   1727078 GC
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90174422 3080 + 124595110 I

a score=41574.000000
s hg38.chr15_KI270850v1_alt     12313 3 +    430880 CAG
s panTro5.chr15              23340989 3 -  83230942 CGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23038067 3 -  99763055 CGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2528187 3 +   2806052 CAG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22698522 3 - 121039945 CAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113294417 3 - 169600520 CAG
i rheMac8.chr7              I 3034 C 0
s macFas5.chr7               61583912 3 + 171882078 CAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3886843 3 +   4820037 CAG
i macNem1.NW_012011533v1    I 3035 C 0
s cerAty1.NW_011999477v1      9754309 3 +  10730278 CAG
i cerAty1.NW_011999477v1    I 3054 C 0
s chlSab2.chr29               1312015 3 +  24206276 CAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3874654 3 +   4030761 CAG
i manLeu1.NW_012102632v1    I 3044 C 0
s colAng1.NW_012114844v1      4001566 3 +   5013933 CAG
i colAng1.NW_012114844v1    I 3010 C 0
s calJac3.chr10             113725322 3 - 132174527 CGG
i calJac3.chr10             C 0 I 2459
s saiBol1.JH378378              52940 3 -    125141 CAG
i saiBol1.JH378378          C 0 I 2516
s cebCap1.NW_016107334v1        65981 3 +  11725426 CAG
i cebCap1.NW_016107334v1    C 0 I 2539
s aotNan1.NW_018503093v1       658556 3 +    730879 CAG
i aotNan1.NW_018503093v1    C 0 I 6409
s otoGar3.GL873530            5762328 3 -  36342412 CAG
i otoGar3.GL873530          C 0 I 3962
s canFam3.chr3               58191847 3 +  91889043 CAG
i canFam3.chr3              C 0 I 1963
s dasNov3.JH579681             822095 3 +   1727078 CAA
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90174422 3080 + 124595110 I

a score=168961.000000
s hg38.chr15_KI270850v1_alt     12316 29 +    430880 GATGGGCCAGAAGGATGGGGAACAGATGT-------------------------------
s panTro5.chr15              23340992 29 -  83230942 GGTGGGCCAGAAGGATGGGGAACAGATGT-------------------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23038070 29 -  99763055 GGTGGGCCAGAAGGATGGGAAACAGATGT-------------------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2528190 28 +   2806052 GATGGGCCAGAAGGATGGG-AACAGATGT-------------------------------
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22698525 29 - 121039945 GGTGGGCCAGAAGGATGGGGAAAAAATGT-------------------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113294420 29 - 169600520 GGTGGGCCAGAAGGATGGGGAACAGATGT-------------------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61583915 29 + 171882078 GGTGGACCAGAAGGATGGGGAACAGATGT-------------------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3886846 29 +   4820037 GGTGGGCCAGAAGGATGGGGAACAGATGT-------------------------------
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9754312 29 +  10730278 GGTGGGCCAGAAGGATGGGGAACAGATGT-------------------------------
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1312018 29 +  24206276 GGTGGGCCAGAAGGATGGGGAACAGATGT-------------------------------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3874657 29 +   4030761 GGTGGGCCAGAAGGATGGGGAACAGATGT-------------------------------
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4001569 29 +   5013933 GGTGGGCCAGAAGGATGGGGAACAGATGT-------------------------------
i colAng1.NW_012114844v1    C 0 C 0
s dasNov3.JH579681             822098 60 +   1727078 GGAGGGCTGGAAGAATGGGGGACCAGAGTGGTGGGAATGGGGGAGAACCTATCCCCTCTT
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       658559 6409 +    730879 I
e mm10.chr9                  90174422 3080 + 124595110 I
e calJac3.chr10             113725325 2459 - 132174527 I
e canFam3.chr3               58191850 1963 +  91889043 I
e cebCap1.NW_016107334v1        65984 2539 +  11725426 I
e otoGar3.GL873530            5762331 3962 -  36342412 I
e saiBol1.JH378378              52943 2516 -    125141 I

a score=1518804.000000
s hg38.chr15_KI270850v1_alt     12345 230 +    430880 TCCCTCAGGATCAGA----TGTTT----ATTTAA----GAC-TGACTTGTTGAGAGCCATCGCTCTACCTGGGATAAGGTGATGGATGTGGAAGAGCATGATTCTGCATGTGGG-GACTCTGTCTCATTGTAGCATTTCCCAAGGAATATTTCAGGGA--GTG--TGTTCCAAAGAATGCC-AGT-AGTGCACTGTGAAAAAAAAAGATGCTGCTGTTGAATAAGTTTGGCCACACAGGGTTaaaaaaag
s panTro5.chr15              23341021 228 -  83230942 TCCCTCGGGATCAGA----TGTTT----ATTTAA----GAC-TGACTTGTTGAGAGCCATCGCTCTACCTGGGATAAAGTGATGGATGTGGAAGAGCACGATCCTACACTTGGG-GACTCTGTCTCATTGTAGCATTTCCCAAGGAATATTTCAGGGA--GTG--TGTTCCAAAGAATGCC-AGT-AGTGCACTGTG--AAAAAAAGATGCTGCTGTTGAATAAGTTTGGCCACACAGGGTtaaaaaaag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23038099 228 -  99763055 TCCCTCGGGATCAGA----TGTTT----ATTTAA----GAC-TGACTTGTTGAGAGCCATCGCTCTACCTGGGATAAAGTGATGGATGTGGAAGAGCACGATCCTACACTTGGG-GACTCTGTCTCATTGTAGCATTTCCCAAGGAATATTTCAGGGA--GTG--TGTTCCAAAGAATGCC-AGT-AGTGCACTGTG--AAAAAAAGATGCTGCTGTTGAATAAGTTTGGCCACACAGGGTtaaaaaaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2528218 230 +   2806052 TCCCTCAGGATCAGA----TGTTT----ATTTAA----GAC-TGACTTGTTGAGAGCCATCGCTCTACCTGGGATAAGGTGATGGATGTGGAAGAGCATGATTCTGCATGTGGG-GACTCTGTCTCATTGTagcatttcccaaggaatatttcaggga--gtg--tgttccaaagaatgcc-agt-agtgcactgtgaaaaaaaaagatgctgctgttgaataagtttggccacacagggttaaaaaaag
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22698554 228 - 121039945 TCCCTCGGGATCAGA----TGTTT----ATTTAA----GAC-TGATTTGTTGAGAGCCATCGCTCTACCTGGGATAAGGTGATGGATGTGGAAGAGCACGATCCTACACTTGGG-GACTCTGTCTCATTGTAGCATTTCCCAAGGAATATTTCAGGGA--GTG--TGTTCCAAAGAATGCC-AGT-AGTGCACTGTG--GAAAAAAGATGCTGCTGTTGAATAAGTTTGGCCACACAGGGTTaaaaaaag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113294449 227 - 169600520 TCCCTCGGGATCAGA----TGTTT----ATTTAA----GAC-TGACTTGTTGAGAGCCATCGCTCTACCCGGGATAAAGTGATGGATGTGGAAGAGCACGATCCTGCACTTGGG-GACTCTGTCTCATTGTAGCATTTCCCAAGGAATATTTCAGGGA--ATG--TGTTCCAAAGAATGCC-AGT-AGTGTACTGTG---AAAAAAGATGCTGCTGTTGAGTAAGTTTGGCCACACAGGGTTaaaaaaag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61583944 227 + 171882078 TCCCTCCGGATCAGA----TGTTT----ATTTAA----GAC-TGACTTGTCGAGAGCCATCGCTCTACCTGGGATAAAGTGATGGATGTGGAAGAGCATGATCCTGCACTTGGG-GACTCTGTCACATCATagcatttcccaaggaatatttcaggga--atg--tgttccaaagaatgcc-agt-agcgtactatg---aaaaaagattctgctgttgaataagtttggccacacaggattaaaacaag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3886875 227 +   4820037 TCCCTCGGGATCAGA----TGTTT----ATTTAA----GAC-TGACTTGTTGAGAGCCATCGCTCTACCCGGGATAAAGTGATGGATGTGGAAGAGCACGATCCTGCACTTGGG-GACTCTGTCTCATTGTagcatttcccaaggaatatttcaggga--atg--tgttccaaagaatgcc-agt-agtgtactgtg---aaaaaagatgctgctgttgagtaagtttggCCACACAGGGTtaaaaaaag
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9754341 231 +  10730278 TCCCTCGGGATCAGA----TGTTT----ATTTAAGACTGAC-TGACTTGTTGAGAGCCATCACTCTACCCGGAATAAAGTGATGGATGTGGAAGAGCACGATCCTGCACTTGGG-GACTCTGTCTCATTGTagcatttcccaaggaatatttcaggga--atg--tgttccaaagaatgcc-agt-agtgtactgtg---aaaaaagatgctgctgttgaataagtttggCCACACAGGGTtaaaaaaag
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1312047 227 +  24206276 TCCCTCGGGATCAGA----TGTTT----ATTTAA----GAC-TGACTTGTTGAGAACCATCGCTCTACCTGGGATAAAGTGATGGATGTGGAAGAGCATGATCCTGCACTTGGG-GACTCTGTCTCATCATagcatttcccaaggaatatttcaggga--atg--tgttccaaagaatgcc-agt-agcgtactatg---aaaaaagattctgctgttgaataagtttggccacacaggattaaaacaag
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3874686 228 +   4030761 TCCCTCGGGATCAGA----TGTTT----ATTTAA----GACTTGACTTGTTGAGAGCCATCGCTCTACCCGGGATAAAGTGATGGATGTGGAAGAGCACGATCCTGCACTTGGG-GACTCTGTCTCATTGTagcatttcccaaggaatatttcaggga--atg--tgttccaaagaatgcc-agt-agtgtactgtg---aaaaaagatgctgctgttgagtaagtttggCCACACAGGGTtaaaaaaag
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4001598 224 +   5013933 TCCCTTGGGATCAGA----TGTTT----ATTTAA----GAC-TGACTTGTTGAGAGCCATCGCTCTACCTGGAATAAAGTGATGGATGTGGAAGAGCACGATCCTGCACTTAGG-GAATCTGTCTC---GTAGCATTTCCCAAGGAATATTTCAGGGA--ATG--TGTTCCAAAGAATGCC-AGT-AGTGTACTGTG---AAAAAAGATGCTGCTGTTGAGTAATTTGGGCCACACAGGGTTaaaaaaag
i colAng1.NW_012114844v1    C 0 C 0
s canFam3.chr3               58193813 233 +  91889043 TCCCTCTGGAGCAAATGCTTGTTC----ACTTAA----CAC-CGATGTGCTGAGTGCCG--GCTCCACCCAGGATTAGGTGATGGATGGGCAAGAACAGGATCCCTTGCTTGGGAAACTCTGCCTTGTTGTaacgtttctccaagaaggttccagggaggact--tgttccaagggatgctaaaa-aatattctgtg---aaaaaagatgctaccgttgaagaagtttggcaacaagggtttaacaaaaa
i canFam3.chr3              I 1963 C 0
s dasNov3.JH579681             822158 230 +   1727078 CCCCTGTGGAGCAGA----TGTTTGTTCACTTAA----CAC-TGATTTGCTGAGTGACAGCTCTGGGCTAAGGATAAGATGATGGACATGTAAGAA---GATCTCATACTTAGGAAACGCAGTATCATTGTGgcatttcccaaataatattctagtga--gtacttgttctaagggatgct-aataaatggttcatg----aagaagatgct-ttgttgaataagcctggcaacacaggattgaacaaaa
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       658559 6409 +    730879 I
e mm10.chr9                  90174422 3080 + 124595110 I
e calJac3.chr10             113725325 2459 - 132174527 I
e cebCap1.NW_016107334v1        65984 2539 +  11725426 I
e otoGar3.GL873530            5762331 3962 -  36342412 I
e saiBol1.JH378378              52943 2516 -    125141 I

a score=26928.000000
s hg38.chr15_KI270850v1_alt     12575 4 +    430880 taaa
s panTro5.chr15              23341249 4 -  83230942 taaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23038327 4 -  99763055 taaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2528448 4 +   2806052 taaa
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22698782 4 - 121039945 taaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113294676 4 - 169600520 taaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61584171 4 + 171882078 taaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3887102 4 +   4820037 taaa
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9754572 4 +  10730278 taaa
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1312274 4 +  24206276 taaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3874914 4 +   4030761 taaa
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4001822 4 +   5013933 taaa
i colAng1.NW_012114844v1    C 0 C 0
s dasNov3.JH579681             822388 4 +   1727078 caaa
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       658559 6409 +    730879 I
e mm10.chr9                  90174422 3080 + 124595110 I
e calJac3.chr10             113725325 2459 - 132174527 I
e canFam3.chr3               58194046 0 +  91889043 C
e cebCap1.NW_016107334v1        65984 2539 +  11725426 I
e otoGar3.GL873530            5762331 3962 -  36342412 I
e saiBol1.JH378378              52943 2516 -    125141 I

a score=898217.000000
s hg38.chr15_KI270850v1_alt     12579 181 +    430880 acgggccaggcatggtggtgcacacctgtagtcccagctacttgaggggctgaggtgggaggattgcttgagcccaggaggtcgaggctgcagc--ggctgcagtgagctgagatcatgcaactgcactccata-tggatgacaaagtgagacactgtctc-gaaaaaaaa--aaaaaaaaaaaaag
s panTro5.chr15              23341253 176 -  83230942 acgggccaggcatggtggtgcacacctgtagtcccagctacttgaggggctgaggtgggaggattgcttgagcccaggaggtggaggctgcagc--ggctgcagtgagccgagatcatgcaactgcactccatcttgggtgacaaaatgagactctgtctc-------aaa--agaaaaaaaaaaag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23038331 178 -  99763055 acgggccaggcatggtggtgcacacctgtagtcccagctacttgaggggctgaggtgggaggattgcttgagcccaggaggtggaggctgcagt--ggctgcagtgagccgagatcatgcaactgcactccatcttgggtgacaaagtgagactctgtctc-----aaaag--aaaaaaaaaaaaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2528452 179 +   2806052 acgggccaggcatggtggtgcaaacctgtagtcccagctacttgaggggctgaggtgggaggattgcttgagcccaggaggtcgaggctgcaga--ggctgcagtgagctgagatcatgcaaccgcactccata-tggatgacaaagtgagacactgtctc---gggaaaa--aaaaaaaaaaaGag
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22698786 177 - 121039945 acgggccaggcatggtggtgcacacctgtagtcccagctacttgaggggctgaggtgggaggattgcgtgagcccaggaggtcgaggctgcagc--agctgcagtgagccgagatcttgcagctgtactccatcttgggtgacaaagtgagactctgtctc------aaaa--gaaaaaaaaaaaCG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113294680 176 - 169600520 acaggccaggcatgatggtgcacgcctgtagtcccaggtacttgaggggctgaggtgggaggattgcttgagcccaggaggtcgaggctgcagctgggctgcagtgagccgagatcatgcaactgcactccatcttgggtgacaaagtgagaccccgtctc---------a--aaagggaaaaaaag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61584175 166 + 171882078 acgggccaggcatggtggtgtgcacctgtcatcccagctacttgagggactaaggtgggaggactgcttgagcccaggaggttga-----------ggctgcagtgagccgagatcatgcaactgcactccata-tgggtgacaaagtgagaccctgtctc---------attaaaaaaaaaaaaag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3887106 176 +   4820037 acaggccaggcatgatggtgcacgcctgtagtcccaggtacttgaggggctgaggtgggaggattgcttgagcccaggaggtcgaggctgcagctgggctgcagtgagccgagatcatgcaactgcactccatcttgggtgacaaagtgagaccccgtctc---------a--aaagggaaaaaaag
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9754576 176 +  10730278 acaggccaggcatgatgatgcacgcctgtagtcccagctacttgaggggctgaggtgggaggattgcttgagcccaggaagtcgaggctgcagctgggctgcagtgagccgagatcatgcaactgcactccatcttgggtgacaaagtgagaccccgtctc---------a--aaagggaaaaaaag
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1312278 173 +  24206276 acgggccaggcatggtagtgcgcacctgtcgtcccagctacttgagggactaaggtgggaggactgcttgagcccaggaggtcga-----------ggctgcagtgagccgagatcatgcaactgcactccata-tgggtgacaaagtgagaccctgtatcattaaaaaaa--aaaaaaaaaaaaag
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3874918 176 +   4030761 acaggccaggcatgatggtgcacgcctgtagtcccagctacttgaggggctgaggtgggaggattgcttgagcccaggaggtcgaggctgcagctgggctgcagtgagccgagatcatgcaactgcactccatcttgggtgacaaagtgagaccccgtctc---------a--aaagggaaaaaaag
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4001826 176 +   5013933 ataggccaagcatgatggtgcacgcctgtagtcccagctacctgaggggctgaggtgggaggattgcttgagcccaggaggccgaggctgcagctgagctgcagtgagccgagatcatgcaactgtactccatcttgggtgacaaagtgagaccccgtctc---------a--aaagggaaaaaaag
i colAng1.NW_012114844v1    C 0 C 0
e aotNan1.NW_018503093v1       658559 6409 +    730879 I
e mm10.chr9                  90174422 3080 + 124595110 I
e calJac3.chr10             113725325 2459 - 132174527 I
e dasNov3.JH579681             822392   0 +   1727078 C
e canFam3.chr3               58194046   0 +  91889043 C
e cebCap1.NW_016107334v1        65984 2539 +  11725426 I
e otoGar3.GL873530            5762331 3962 -  36342412 I
e saiBol1.JH378378              52943 2516 -    125141 I

a score=14898.000000
s hg38.chr15_KI270850v1_alt     12760 2 +    430880 gt
s panTro5.chr15              23341429 2 -  83230942 gt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23038509 2 -  99763055 gt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2528631 2 +   2806052 gt
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22698963 2 - 121039945 gt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113294856 2 - 169600520 gt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61584341 2 + 171882078 gt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3887282 2 +   4820037 gt
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9754752 2 +  10730278 gt
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1312451 2 +  24206276 gt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3875094 2 +   4030761 gt
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4002002 2 +   5013933 gt
i colAng1.NW_012114844v1    C 0 C 0
s dasNov3.JH579681             822392 2 +   1727078 gt
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       658559 6409 +    730879 I
e mm10.chr9                  90174422 3080 + 124595110 I
e calJac3.chr10             113725325 2459 - 132174527 I
e canFam3.chr3               58194046 0 +  91889043 C
e cebCap1.NW_016107334v1        65984 2539 +  11725426 I
e otoGar3.GL873530            5762331 3962 -  36342412 I
e saiBol1.JH378378              52943 2516 -    125141 I

a score=1237282.000000
s hg38.chr15_KI270850v1_alt     12762 177 +    430880 aaaacagacttcgttactacaggacttctcagagccctcaaagtaaatattcattgagaatccccaacagaataggcaggcagcattccccaaatttaggaaata--agcaggggctttgaagcagtgaaacctgggttctgagcccagcttcaccctctctttgagcttcagttactt
s panTro5.chr15              23341431 177 -  83230942 aaaacagacttcgttactacaggacttctcagacccttcaaagtaaatatgcattgagaatccccaacagaataggcaggcagcattccccaaatttaggaaata--agcaggggctttgaagcagcgaaacctgggttctgagcccagctttaccctctctttgagcttcacttacct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23038511 177 -  99763055 aaaacagacttcgttactacaggacttctcagacccttcaaagtaaatatgcattgagaatccccaacagaataggcaggcagcattccccaaatttaggaaata--agcaggggctttgaagcagcgaaacctgggttctgagcccagctttaccctctctttgagcttcacttacct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2528633 177 +   2806052 aaaacagacttcgttactacaggacttctcagagccctcaaagtaaatattcattgagaatccccaacagaataggcaggcagcattccccaaatttaggaaata--agcaggggctttgaagcagtggaacctgggttctgagcccagcttcaccctctctttgagcttcagttactt
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22698965 177 - 121039945 aaaacagacttcgttactacaggacttctcagaaccttcaaagtaaatatgcattgagaatccctaacagaataggcaggcagcattccccaaatttaggaaata--agcaggggctttgaagcagcgaaacctgggttccgagcccagctttatgctctctttgagcttcggttactt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113294858 177 - 169600520 aaaacagacttctttactacaggacttctcagagccctcaaaataaatatgcattgagaatccccaacagaataggcaggcagcattccccaaatttaggaaata--agcaggggctttgaagcagcgaaacctgggttctgagcccagcttcaccctctctttgagcttcagctactt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61584343 177 + 171882078 aaaacagacttctttactacaggacttctcagagccttcaaaataaatatgcgttgagaattcccaacagaataggcaggcagcattccccaaatttaGGAAGTA--AGCAGGGGCTTTGAAATAGCAAAACCTGAATTCCGAGCCGAGTttcaccctctctttgagcttcagttactt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3887284 177 +   4820037 aaaacagacttctttactacaggacttctcagagccctcaaaataaatatgcattgagaatccccaacagaataggcaggcagcattccccaaatttaggaaata--agcaggggctttgaagcagcaaaacctgggttctgagcccagcttcaccctctctttgagcttcagctactt
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9754754 177 +  10730278 aaaacagacttctttactacaggacttctcagagccctcaaaataaatatgcattgagaatccccaacagaataggcaggcagcattccccaaatttaggaaata--agcaggggctttgaagcagcgaaacctgggttctgagcccagcttcaccctctctttgagcttcagttactt
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1312453 177 +  24206276 aaaacagacttctttactacaggacttctcagagccttcaaaataaatatgcgttgagaatttccaacagaataggcaggcagcattccccaaatttaGGAAGTA--AGCAGGGGCTTTGAAATAGCAAAACCTGAATTCCGAGCCCAGcttcaccctctctttgagcttcagttactt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3875096 177 +   4030761 aaaacagacttctttactacaggacttctcagagccctcaaaataaatatgcattgagaatccccaacagaataggcaggcagcattccccaaatttaggaaata--agcaggggctttgaagcagcgaaacctgggttctgagcccagcttcaccctctctttgagcttcagttactt
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4002004 177 +   5013933 aaaacagacttctttactacaggacttctcggagccctcaaagtaaatatgcattgagaatcctcaacagaataggcaggcagcattccccaaatttaggaaata--agcaggggctttgaagcagcgaaacctgggttctgagcccagcttcaccctctctttgagcttcagttactt
i colAng1.NW_012114844v1    C 0 C 0
s canFam3.chr3               58194046 172 +  91889043 agaacagacttgtttactgcaggacttgtcagagccttcagagctaataagcactgagaattccta--aaaCTAAACAGAAGGTATTTTCCCAAGTTAGAAAGGAAGAGCAGGGGCTTTG----GGTCAAACCTG-GTTCTGGTCCCAAATTAACTGTCTCTTGGAGCCTCAGCAACAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             822394 176 +   1727078 aaaacagacttc-ttactgcaggacttctcagagcctttaaagctaatgtgcattgagaattcctaagagagtaggcaggcagcattttccaaacttaAAAAAaaagagcaagggctctgaagtagatcagcctaggttctgatcccatcttcacc--ctctgcaagccttagttattt
i dasNov3.JH579681          C 0 I 601
e aotNan1.NW_018503093v1       658559 6409 +    730879 I
e mm10.chr9                  90174422 3080 + 124595110 I
e calJac3.chr10             113725325 2459 - 132174527 I
e cebCap1.NW_016107334v1        65984 2539 +  11725426 I
e otoGar3.GL873530            5762331 3962 -  36342412 I
e saiBol1.JH378378              52943 2516 -    125141 I

a score=1019498.000000
s hg38.chr15_KI270850v1_alt     12939 173 +    430880 c-----atttgta--aaatgaggataattgtgcctacctcagaagt---aagattaaatgagataatgcatgctaagcccccagcacagggactgtacatgttaggctcgatcaaggttggctgtggctatttttTTGGCTGCTGCAGTATCT--------GACCCACAGCCACCTTCAGGACAGCCTCAT
s panTro5.chr15              23341608 176 -  83230942 c-----atttgta--aaacgaggataattgtgcctaccttagaagtaagaagattaaatgagataatgcatgctaagcccccagcacagggactgtacgtgttaagctcgatcgaggttggctgcggctatttttTTGGCTGCTGCAGTATCT--------GACCCACAGCCACCTTCAGGACAGCCTCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23038688 175 -  99763055 c-----atttgta--aaacgaggataattgtgcctaccttagaagtaagaagattaaatgagataatgcatgctaagcccccagcacagggactgtacgtgttaagctcgatcgaggttggctgcggcta-tttttTGGCTGCTGCAGTATCT--------GACCCACAGCCACCTTCAGGACAGCCTCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2528810 172 +   2806052 t-----atttgta--aaacgaggataattgtgcctacctcagaagt---aagattaaatgagataatgcatgctaagtcccc-gcacagggactgtacgtgttaggctcgatcaaggttggctgtggctatttttTTGGCTGCTGCAGTATCT--------GACCCACAGCCACCTTCAGGACAGCCTCAT
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22699142 176 - 121039945 c-----atttgta--aaacaaggataattgtgcctaccttagaagtaagaagattaaatgagataatgcctgctaagcccccagcacagggactgtacatgtgaagctcgatcaaggttggctGTGGCAATTTTTTTGGCTGCTGCAGTATCT--------GACCCACAGCCACCTTCAGGACAGCCTCAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113295035 176 - 169600520 c-----atttgta--aaatgaggataattgtgcctaccttagaagtaagaagattaaatgagataatgcatgctaagcccccagcacagggactgtacatgttaggctcattcaaggttggctgtggctatttttTTGGCTGCTGCAGTATTT--------GACCCACAGCCACCTTCAGGACAGCCACAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61584520 175 + 171882078 c-----atttgta--aaacgaggataattgtgcctaccttagaagtaacaagattaaatgacataatgcgtgctaag-tccaagcacagggactgtacatgttaggctcaatcaagattggctgcagctatttttTTGGCTGCTGCACTATCT--------GACCCACAGCCACCTTCAGGATAGCCACAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3887461 176 +   4820037 c-----atttgta--aaatgaggataattgtgcctaccttagaagtaagaaggttaaatgagataatgcatgctaagcccccagcacagggactgtacatgttaggctcattcaaggttggctgtggctatttttTTGGCTGCTGCAGTATTT--------GACCCACAGCCACCTTCAGGACAGCCACAC
i macNem1.NW_012011533v1    C 0 I 324
s cerAty1.NW_011999477v1      9754931 176 +  10730278 c-----atttgta--aaatgaggataattgtgcctaccttagaagtaagaagattaaatgagataatgcatgctaagcccccagcacagggactgtacatgttaggctcatttaaggttggctgtggctatttttTTGGCTGCTGCAGTATTT--------GACCCACAGCCACCTTCAGGACATCCACAC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1312630 176 +  24206276 c-----atttgta--aaatgaggataattgtgcctaccttagaagtaacaagattaaatgacataatgcatgctaagctccaagcacagggactgtacatgttaggctcaatcaagattggctgcagctatttttTTGGCTACTGCACTATCT--------GACCCACAGCCATCTTCAGGATAGCCACAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3875273 176 +   4030761 c-----atttgta--aaatgaggataattgtgcctatcttagaagtaagaagattaaatgagataatgcatgctaagcccccagcacagggactgtacatgttaggctcattcaaggttggttgtggctatttttTTGGCTGCTGCAGTATTT--------GACCCACAGCCACCTTCAGGACAGCCACAC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4002181 176 +   5013933 c-----atttgta--aaacgaggataattgtgcctaccttagaagtaagaagattaaatgagataatgcatgttaagcccccagcacagggactgtacatgttaggctcgttcaaggttggctgtggctatttttTTGGCTGCTGCAGTATTT--------GACCTACAACCACCTTCAGGACAGCCACAC
i colAng1.NW_012114844v1    C 0 C 0
s canFam3.chr3               58194218 186 +  91889043 AGGGGGATGCATAATaaatggggacgcttacacccaccttagaagtaggacaatcaatcgagatgttgcaggtaggatgcccagtacagggactATTCCTGTTGGGCTTGGCTTG---TGTCTGATGCTACTGGGGTGGCTGCTACAGCACCTGCCCTCTAGCCCCACAGCCACCTGCAGGGCAGCCTC--
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503093v1       658559 6409 +    730879 I
e mm10.chr9                  90174422 3080 + 124595110 I
e calJac3.chr10             113725325 2459 - 132174527 I
e dasNov3.JH579681             822570 601 +   1727078 I
e cebCap1.NW_016107334v1        65984 2539 +  11725426 I
e otoGar3.GL873530            5762331 3962 -  36342412 I
e saiBol1.JH378378              52943 2516 -    125141 I

a score=749123.000000
s hg38.chr15_KI270850v1_alt     13112 147 +    430880 CTTTCTTTACCAACGCCACCTACAGACCCCAATTTATCCGTGTTCTCCCTGTGCTAGACTCAGATCTGAGTCCTAGAGCTTGGGTGGGTTTGTCCCAAGGATAGCAAGACAGGTCCCTTTTCACCCTAttttctt--------------------------------------------------------------------------tttttttttttt
s panTro5.chr15              23341784 172 -  83230942 CTTTCTTTACCAACGCTACCTACAGACCCCAATTTATCAGCATTCTCCCCGTGCTAGACTCAGACCTGAGTCCTAGAGCTTGGGTGGGTCTGTCCCAAGGATAGCAAGACAGGTCCCTTTTTACCCCATtttctttcttc-------------------------------------------------tttctctctctctctttctctctttctttctt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23038863 172 -  99763055 CTTTCTTTACCAACGCTACCTACAGACCCCAATTTATCAGCATTCTCCCCGTGCTAGACTCAGACCTAAGTCCTAGAGCTTGGGTGGGTCTGTCCCAAGGATAGCAAGACAGGTCCCTTTTTACCCCATtttctttcttc-------------------------------------------------tttctctctctctctttctctctttctttctt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2528982 160 +   2806052 CTTTCTTTACCAACGCCACCTACAGACCCCAATTTATCAGCATTCTCCCTGTGCTAGACTCAGACCTGAGTCCTAGAGCTTGGGTGGGTTTGTCCCAAGGATAGCAAGACAGGTCCCTTTTCACCCTATTTTCTTTCttt-------------------------------------------------tttttttt------------tttttttttttt
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22699318 172 - 121039945 CTTTCTTTACCAATGCTACCTACAGACCCCAATTTATCAGTGTTCTCTCCATGCTAGACTCAGACCTGAGTCCTAGAGCTTGGGTGGGTCTGTCCCAAGGATAGCAAGACAGGTCCCTTTTCACCCCATtttctttcttc-------------------------------------------------tttctctctctctctttctctctttctttctt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113295211 147 - 169600520 CTTTCTTTACCAACACTACCTACAGAGCCCAATTTATCAGTGTTCTCCCTGTGCTAGATTCAGACCTGAGTCCTAGAGCTTGGGTGGGTCTGTCCCAAGGATAGCAAGACAGGTCCCTTTTCACCCCATTTtctttcttt-----------------------------------------------------------------------tttcttt---
i rheMac8.chr7              C 0 I 1922
s macFas5.chr7               61584695 218 + 171882078 CTTTCTTTACTAACGCCACCTACAGACTCCAGTTTATCATCATTCTCCCCATGCTAGATTCAGACCTGAGTCCTAGAACTTGGGTGGGTTTGTCCCAAGGATAGCAAGACAGGTCCCTTTTCACCCCGTtttctttctttctctctctctctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttt---
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011533v1      3887961 147 +   4820037 CTTTCTTTACCAACACTACCTACAGAGCCCAATTTATCAGTGTTCTCCCTGTGCTAGATTCAGACCTGAGTCCTAGAGCTTGGGTGGGTCTGTCCCAAGGATAGCAAGACAGGTCCCTTTTCACCCCATtttctttcttt-----------------------------------------------------------------------tttcttt---
i macNem1.NW_012011533v1    I 324 I 2309
s cerAty1.NW_011999477v1      9755107 145 +  10730278 CTTTCTTTACCAACGC--CCTACAGAGCCCAATTTATCAGTGTTCTCCCTGTGCTAGATTCAGACCTGAGTCCTAGAGCTTGGGTGGGTCTGTCCCAAGGATAGCAAGACAGGTCTCTTTTCACCCCATtttctttcttt-----------------------------------------------------------------------tttcttt---
i cerAty1.NW_011999477v1    C 0 I 1964
s chlSab2.chr29               1312806 158 +  24206276 CTTTCTTTACCAACGCCACCTACAGACTCCAATTTATCATCATTCTCCCCATGCTAGATTCAGACCTGAGTCCTAGAACTTGGGTGGGTTTGTCCCAAGGATAGCAAGACAGGTCCCTTTTCACCCCGTtttctttcttt------------------------------------------------------------ctctttcattctttcttt---
i chlSab2.chr29             C 0 I 1
s manLeu1.NW_012102632v1      3875449 147 +   4030761 CTTTCTTTACCAACGCTACCTACAGAGCCCAATTTATCAGTGTTCTCCCTGTGCTAGATTCAGACCTGAGTCCTAGAGCTTGGGTGGGTCTGTCCCAAGGATAGCAAGACAGGTCCCTTTTCACCCCATtttctttcttt-----------------------------------------------------------------------tttcttt---
i manLeu1.NW_012102632v1    C 0 I 5032
s colAng1.NW_012114844v1      4002357 147 +   5013933 CTTTCTTTACCAACGCTACCTACAGAGCCCAATTTATCAGTGTTCTCCCTGTGCTAGATTCAGACCTGAGTCCTAGAGCTTGGGTGGGTCTGTCCCAAGGACAGCAAGACAGGTCCCTTTTCACCCCATtttctttcttt-----------------------------------------------------------------------tttcttt---
i colAng1.NW_012114844v1    C 0 I 2033
s canFam3.chr3               58194404  79 +  91889043 ---CCTCTGCTGGGGCCTCTGACAGGCCC---GTTTGCAGTGTCCTCTCTGGGCCAGACCC-TATCTGTGCCTGGGAGCTCGGGGG---------------------------------------------------------------------------------------------------------------------------------------
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018503093v1       658559 6409 +    730879 I
e mm10.chr9                  90174422 3080 + 124595110 I
e calJac3.chr10             113725325 2459 - 132174527 I
e dasNov3.JH579681             822570 601 +   1727078 I
e cebCap1.NW_016107334v1        65984 2539 +  11725426 I
e otoGar3.GL873530            5762331 3962 -  36342412 I
e saiBol1.JH378378              52943 2516 -    125141 I

a score=18079.000000
s hg38.chr15_KI270850v1_alt     13259 13 +    430880 tttttttgagatg
s panTro5.chr15              23341956 13 -  83230942 tcttttggagatg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23039035 13 -  99763055 tcttttggagatg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2529142 13 +   2806052 tttttttgagatg
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22699490 13 - 121039945 tcttttggagatg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               61584914 13 + 171882078 tttctttcagatg
i macFas5.chr7              I 1 C 0
s chlSab2.chr29               1312965 13 +  24206276 tttctttcagatg
i chlSab2.chr29             I 1 C 0
e aotNan1.NW_018503093v1       658559 6409 +    730879 I
e mm10.chr9                  90174422 3080 + 124595110 I
e calJac3.chr10             113725325 2459 - 132174527 I
e dasNov3.JH579681             822570 601 +   1727078 I
e canFam3.chr3               58194483  0 +  91889043 C
e cebCap1.NW_016107334v1        65984 2539 +  11725426 I
e otoGar3.GL873530            5762331 3962 -  36342412 I
e colAng1.NW_012114844v1      4002504 2033 +   5013933 I
e manLeu1.NW_012102632v1      3875596 5032 +   4030761 I
e cerAty1.NW_011999477v1      9755252 1964 +  10730278 I
e macNem1.NW_012011533v1      3888108 2309 +   4820037 I
e rheMac8.chr7              113295358 1922 - 169600520 I
e saiBol1.JH378378              52943 2516 -    125141 I

a score=1883.000000
s hg38.chr15_KI270850v1_alt     13272 1 +    430880 g
s panTro5.chr15              23341969 1 -  83230942 g
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23039048 1 -  99763055 g
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2529155 1 +   2806052 g
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22699503 1 - 121039945 g
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               61584927 1 + 171882078 a
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               1312978 1 +  24206276 g
i chlSab2.chr29             C 0 C 0
s cebCap1.NW_016107334v1        68523 1 +  11725426 g
i cebCap1.NW_016107334v1    I 2539 C 0
e aotNan1.NW_018503093v1       658559 6409 +    730879 I
e mm10.chr9                  90174422 3080 + 124595110 I
e calJac3.chr10             113725325 2459 - 132174527 I
e dasNov3.JH579681             822570 601 +   1727078 I
e canFam3.chr3               58194483 0 +  91889043 C
e otoGar3.GL873530            5762331 3962 -  36342412 I
e colAng1.NW_012114844v1      4002504 2033 +   5013933 I
e manLeu1.NW_012102632v1      3875596 5032 +   4030761 I
e cerAty1.NW_011999477v1      9755252 1964 +  10730278 I
e macNem1.NW_012011533v1      3888108 2309 +   4820037 I
e rheMac8.chr7              113295358 1922 - 169600520 I
e saiBol1.JH378378              52943 2516 -    125141 I

a score=15351.000000
s hg38.chr15_KI270850v1_alt     13273 7 +    430880 agtctca
s panTro5.chr15              23341970 7 -  83230942 agtcttg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23039049 7 -  99763055 agtcttg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2529156 7 +   2806052 agtctca
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22699504 7 - 121039945 agtcttg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               61584928 7 + 171882078 agtctct
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               1312979 7 +  24206276 agtctct
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113727784 7 - 132174527 agttttg
i calJac3.chr10             I 2459 C 0
s cebCap1.NW_016107334v1        68524 7 +  11725426 agtttcg
i cebCap1.NW_016107334v1    C 0 C 0
e aotNan1.NW_018503093v1       658559 6409 +    730879 I
e mm10.chr9                  90174422 3080 + 124595110 I
e dasNov3.JH579681             822570 601 +   1727078 I
e canFam3.chr3               58194483 0 +  91889043 C
e otoGar3.GL873530            5762331 3962 -  36342412 I
e colAng1.NW_012114844v1      4002504 2033 +   5013933 I
e manLeu1.NW_012102632v1      3875596 5032 +   4030761 I
e cerAty1.NW_011999477v1      9755252 1964 +  10730278 I
e macNem1.NW_012011533v1      3888108 2309 +   4820037 I
e rheMac8.chr7              113295358 1922 - 169600520 I
e saiBol1.JH378378              52943 2516 -    125141 I

a score=61797.000000
s hg38.chr15_KI270850v1_alt     13280 14 +    430880 ctctgtcccccagg
s panTro5.chr15              23341977 14 -  83230942 ctctgtcgcccagg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23039056 14 -  99763055 ctctgtcgcccagg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2529163 14 +   2806052 ctctgtcccccagg
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22699511 14 - 121039945 ctctgtcacccagg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               61584935 14 + 171882078 ctctgttacctggg
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               1312986 14 +  24206276 ctctgttacctggg
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113727791 14 - 132174527 ctctgttgcccagg
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              55459 14 -    125141 ctctcttgcccagg
i saiBol1.JH378378          I 2516 C 0
s cebCap1.NW_016107334v1        68531 14 +  11725426 ctctgttgcccagg
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       664968 14 +    730879 ctctgttgcccagg
i aotNan1.NW_018503093v1    I 6409 C 0
s canFam3.chr3               58194483 11 +  91889043 ---TGTCCACTAGG
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90174422 3080 + 124595110 I
e dasNov3.JH579681             822570 601 +   1727078 I
e otoGar3.GL873530            5762331 3962 -  36342412 I
e colAng1.NW_012114844v1      4002504 2033 +   5013933 I
e manLeu1.NW_012102632v1      3875596 5032 +   4030761 I
e cerAty1.NW_011999477v1      9755252 1964 +  10730278 I
e macNem1.NW_012011533v1      3888108 2309 +   4820037 I
e rheMac8.chr7              113295358 1922 - 169600520 I

a score=383104.000000
s hg38.chr15_KI270850v1_alt     13294 104 +    430880 tcggagtgcagtggcgtgatctcagctcactgcaacctccgccttct--ggttcaagcgattttcctgcctcagcctcctgagcagctgggactacaggcgcatgc
s panTro5.chr15              23341991 106 -  83230942 tcggagtgcagtggtgcaatctcagctcactgcagcctctgccttcccgggttccagtgattctcctgcctcagcctcccagggggctgggattacaggcatgcgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23039070 106 -  99763055 tcggagtgcagtggtgcaatctcagctcactgcagcctctgccttcccggattccagtgattctcctgcctcggcctcccagggggctgggattacaggcatgcgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2529177 104 +   2806052 tcggagtgcagtggcgtgatctcggctcactgcaacctccgccttct--ggtacaagcgattttcctgcttcagcctcctgagcagctgggactacaggtgcatgc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22699525 106 - 121039945 tcagagtgcagtggcacaatctcagctcactgcagcctctgcctccctgggtcccagagattctcctgcctcagcctccctgggggctgggattacaggcatgcgc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               61584949 104 + 171882078 tcggagttcagtggcgcgatctcggctcactgcaacctctgcctcct--ggttcaactgattttcttgccgcagcctcctgagtagctgggactataggcgcatgc
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               1313000 104 +  24206276 tcggagttcagtggcgcgatctcggctcactgcaacctctgcctcct--ggttcaactgattttcctgccgcagcctcctgagtagctgggactataggcgcatgc
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113727805 105 - 132174527 ctagagtgcaatggtgtgatctcggctcactggaacttccacctccc-aggttcaaatgactctcctgcctcagcctcctgagtagctgggactacaggtgtgtgc
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              55473 105 -    125141 ctgaagtgcaatggcgtgatctcggctcactgcaacttccatctccc-aggttcaaataactctcctgcctcagcctcctgagtagctgggactgcaggtgcgcgc
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        68545 101 +  11725426 ttggagtgcaatggtgtgatctcgg----ctgcaacttccgcctccc-aggttcaaatgactctcctgcctcagcctcctgagtagctgggactacaggtgtgcgc
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       664982 105 +    730879 ctggagtgcaatggcttgatctcggctcactgcaacttccacctccc-aggttcaaatgactctcctgcctcagccttctgagtagctgggactacaggtgtgcac
i aotNan1.NW_018503093v1    C 0 C 0
e mm10.chr9                  90174422 3080 + 124595110 I
e dasNov3.JH579681             822570 601 +   1727078 I
e canFam3.chr3               58194494   0 +  91889043 C
e otoGar3.GL873530            5762331 3962 -  36342412 I
e colAng1.NW_012114844v1      4002504 2033 +   5013933 I
e manLeu1.NW_012102632v1      3875596 5032 +   4030761 I
e cerAty1.NW_011999477v1      9755252 1964 +  10730278 I
e macNem1.NW_012011533v1      3888108 2309 +   4820037 I
e rheMac8.chr7              113295358 1922 - 169600520 I

a score=261771.000000
s hg38.chr15_KI270850v1_alt     13398 85 +    430880 caccacactcagctaatt--tttttgtatttttagtagagatgggatttctccatgttaaccaggctggtctcgagctcctgacctc
s panTro5.chr15              23342097 81 -  83230942 cactatgccgagctaa----tttttgtatttttagtagagacggg-tttcaccat-ttggccaggctggtctcgaactcctgacctc
i panTro5.chr15             C 0 I 906
s panPan2.chr15              23039176 81 -  99763055 cactatgctgagctaa----tttttgtatttttagtagagacggg-tttcaccat-ttggccaggctggtctcgaactcctgacctc
i panPan2.chr15             C 0 I 911
s gorGor5.CYUI01000037v1      2529281 84 +   2806052 caccacactcagctaa-t--tttttgtatttttagtagagatggggtttctccatgttaaccaggctggtcttgaactcctgacctc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22699631 81 - 121039945 cactatgccgagctaa----tttttgtatttttagtagagatggg-tttcaccat-ttggccaggctggtctcgaactcctgacctc
i nomLeu3.chr6              C 0 I 2
s macFas5.chr7               61585053 85 + 171882078 caccacactcggctaatt--tttttgtatttttaatagagatggggtttctgcatgttggccaggctggtttcaaactcctgacctc
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               1313104 85 +  24206276 caccacactcggctaatt--tttttgtatttttagtagagatgggttttctgcatgttggccaggctggtttcaaactcctgacctc
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113727910 87 - 132174527 caccgtgcccagctaatttctttttgtatttttagtagagacagggttttgctatattggccaggctgttcttgaactccagacctt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              55578 80 -    125141 caccgtgcctggctaattt-tttttgtatttttagtagagacggggttttgctatattggccaagc------tgaactcctgacctt
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        68646 85 +  11725426 caccgtgcccagctaatt--tttttgtatttttagtaaagacggggttttgctatattggccaagctggtcttgaactcctgacctt
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       665087 86 +    730879 caccgtgcccggctaattt-tttttgtgtttttagtagagacgggatttcgctatattggccaagctggtcttgaactcctgacttt
i aotNan1.NW_018503093v1    C 0 C 0
s canFam3.chr3               58194494 14 +  91889043 --------------------------CATCAC-----AAGACAGG------------------------------------------
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90174422 3080 + 124595110 I
e dasNov3.JH579681             822570 601 +   1727078 I
e otoGar3.GL873530            5762331 3962 -  36342412 I
e colAng1.NW_012114844v1      4002504 2033 +   5013933 I
e manLeu1.NW_012102632v1      3875596 5032 +   4030761 I
e cerAty1.NW_011999477v1      9755252 1964 +  10730278 I
e macNem1.NW_012011533v1      3888108 2309 +   4820037 I
e rheMac8.chr7              113295358 1922 - 169600520 I

a score=145939.000000
s hg38.chr15_KI270850v1_alt     13483 64 +    430880 gtg----atttgcccacctcagcctcccaaagtgccgagattacaggtatgagccaccgtgctcagcc
s gorGor5.CYUI01000037v1      2529365 64 +   2806052 gtg----atttgcccacctcagcctcccaaagtgccgagattacaggtatgagccaccgtgctcagcc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22699714 64 - 121039945 gtg----atccacccgccttggcctcccaaagtgttgggactacaggcgtgagccaccacacccagcc
i nomLeu3.chr6              I 2 I 1588
s macFas5.chr7               61585138 64 + 171882078 gtt----atctgcccatcttggcctcccaaagtgccaggattacaggtgtgagccaccgtgcccagcc
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               1313189 64 +  24206276 gtt----atctccccatcttggcctcccaaagtgccaggattacaggtgtgagccaccatgcccagcc
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113727997 68 - 132174527 gtgatccatccacctgccttggcctcctaaagtgctgagattacaggcgtgagccacaacaccctgcc
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              55658 64 -    125141 gtg----atccacctgccttagcctcccaaagtgctgggattacaggcgtgagccacagcacccagcc
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        68731 64 +  11725426 gtg----atccacctgccttggcctcccgaagtgctgggattacaggcgtgagccaccgcaccaagcc
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       665173 64 +    730879 gtg----atccacctgccttggcctcccaaagtgctgggattacaggcgtgagccactgcacctggcc
i aotNan1.NW_018503093v1    C 0 C 0
s canFam3.chr3               58194508 10 +  91889043 ---------TTCCCCACCT-------------------------------------------------
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90174422 3080 + 124595110 I
e dasNov3.JH579681             822570 601 +   1727078 I
e otoGar3.GL873530            5762331 3962 -  36342412 I
e panPan2.chr15              23039257 911 -  99763055 I
e colAng1.NW_012114844v1      4002504 2033 +   5013933 I
e manLeu1.NW_012102632v1      3875596 5032 +   4030761 I
e cerAty1.NW_011999477v1      9755252 1964 +  10730278 I
e macNem1.NW_012011533v1      3888108 2309 +   4820037 I
e rheMac8.chr7              113295358 1922 - 169600520 I
e panTro5.chr15              23342178 906 -  83230942 I

a score=1232484.000000
s hg38.chr15_KI270850v1_alt     13547 506 +    430880 AGTTTCACCCCATTTTCACCCCCAAttctgttcttactctctgaggccacaagc-ccttttcgaggggctcttgtcacactttcagctcaccaggagcctgtggttatctgtaacctccagatcttaccttcacaaacactgcACACCTCTGGCATGCTCTCCAGACCTGCAGCAGAACAGGGCTGGGCTTCCCTGGATATCATTTATccagttgaaacaccccacattgaccttgggccattaaccaatgttacttggttgagtt----gatcagccaattaagaccctgcctccctccaacatctcccaatgcctgtattaccccCATAGCTCCTGGGAGACAGTGAGGTTATATATGCTGAGGGAAGGCCTT--TGTGGTGGCACTAAGCTGCCCCTAGCCCTGACTCAGAATATAGCTTGGGTCAGTCCTCAGG-CAGGC-AGAGCAGACCCTCAGGGGCTTCTGGTCCTCTGGAGCCac-tttgctggggactgataccaagcttacctgt
s gorGor5.CYUI01000037v1      2529429 506 +   2806052 AGTTTCACCCCATTTTCACCCCCAATTCTGTTCTTACTCTCTGAGGCCACAAGC-CCTTTTCGAGGGGCTCTTGtcacactttcagctcaccaggagcctgtggttatctgtaacctccagatcttaccttcacaaacactgcACACCTCTGGCATGCTCTCCAGGCCTGCAGCAGAACAGGGCTGGGCTTCCCTGGATATCATTTATccagttgaaacaccccacattgaccttgggccattaaccaatgttacttggttgagtt----gatcacccaattaagaCCCTGCCTCCCTCCAACATCTCCCAATGCCTGTATTACCCCCATAGCTCCTGGGAGACAGTGAGGTTATATATGCTGAGGGAAGGCCTT--TGTGGTGGCACTAAGCTGCCCCTAGCCCTGACTCAGAATATAGCTTGGGTCAGTCCTCAGG-CAGGC-CGAGCAGACCCTCAGGGGCTTCTGGTCCTCTGGAGCCac-tttgctggggactgataccaagcttacctgt
i gorGor5.CYUI01000037v1    C 0 C 0
s macFas5.chr7               61585202 503 + 171882078 AGTTTCACCCCATTTTCACCCCCAATTCTGTTCTTGCTCTCAGAGGTCACAAGC-CCTTTTCGAGGGGCTCTTGTCACACTTTCAGCTCACCGGGAGCCTGTGGTTACCTGT-ACCTCCAGATCTTACCTTCACAAACACTGCACACCT-TGGCATGCTCTCCAGGCCTGCAGCAGAACAGGGCTGGGCTTCCCTGGGTATCATTTATccagttgaaacaccctacactgaccttgggccattaaccaatgctgcttggttgagtt----ggtcagccaattaagaccctgcctccctcaaacatctctcaatgcctgtattcccccCATAGCTCCTGGGAGACAGTGAGGTTATACATGCTGAGGGAAGGCCTT--TGTGATAGTACTAAGCTGTCCCTAGCCCTGACTCAGAATACAGCGTGGGTCAGTCCTCAGG-CAGGC-CGAGCAGACCCTCA-CCACTTCTGGTCCTCTGGAGTCac-tttgctggggactgataccgagcttacctgt
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               1313253 504 +  24206276 AGTTTCACCCCATTTTCACCCCCAAttctgttcttgctctctgaggtcacaagc-ccttttcgaggggctcttgtcacactttcagctcaccgggagcctgtggttacctgtaacctccagatcttaccttcacaaacactgcACACCT-TGGCATGCTCTCCAGGCCTGCAGCAGAACAGGGCTGGGCTTCCCTGGGTATCATTTATccagttgaaacaccctacactgaccttgggccattaaccaatgctgcttggttgagtt----gatcagccaattaagaCCCTGCCTCCCTCCAACATCTCTCGATGCCTGTATTGCCCCCATAGCTCCTGGGAGACAGTGAGGTTATACATGCTGAGGGAAGGCCTT--TGTGGTAGTACTAAGCTGTCCCTAGCCCTGACTCAGAATACAGCGTGGGTGAGTCCTCAGG-CAGGC-CAAGCAGACCCTCA-CCACTTCTGGTCCTCTGGAGTCac-tttgctggggactgataccgagcttacctgt
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113728065 498 - 132174527 TGTTTTACTCCACTTCC-CCCCCAAttctgttcttgctttctaaggccacaagc-ccttttcgaggcgc-tttttcacactttcagctcagcgagagcctgtggttacctgtgacctccagatcttaccttcacaaacactgcACACCCCTGGCATGCTCTCCAGATCTGCagcagaacagggtcaggcttccctgggtatc----atctagttgaaacaccccacaatgaccttaggccattaaccaaagctacttggtggagtt----gatcagccaatgaagagcctgcctCTCTCCGACATCTCCCAATGCCTGCATTGCTTCTGTAGCTCCTGGGAGACAGCGGGGTTATACATGCTGAGGGAAGGCCTT--TGTGGTTGCACTAAGCCG--CCCAGCCCTGGCCCAGAATATAATGTGGGTCAGTCTTCAGG-CAGGC-CAAGCAGACCTTCAGGGGCTTCTGGTCCTCTGGAGCCAC-TTTGCTGGGGACTGATACCAAGCTTACCTGT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              55722 504 -    125141 AGTTTTACCTCATTTTCACCCCCAATTCTGTTCTTGCTCTCTAAGGCCATAGGCACCTTTTCGAGGGGCTTTTTTCACACTTTCAGCTCAGCAGGAACCTGTGGTTACCTGCAACCTCCAGATCTTACCTTCACAAACACTACACACCCCTGGCATGCTCTCCAGGCCCGCAGCAGAGCAGGGCTGGGCCTCCCTGGGTGTCATTTATCCAGTTAAAACActccacattgaccttaggccattaatcaaagctacttggtcgagtt----gatcagccagtgaagaccctgcctccctccgacatctcccaatgcctgcattgctccCGTAGCTCCTGTGAAACAGCGAGGTTGTACATGCTGAGGGAAGAC-----TGTGGTGGCACTAAGCCG-CCCCAGCCCTGACCCAGAATATGATGTGGGTCAGTCTTCAGG-CAGGC-CAAGAGGACCGTCAGGGGCTTCTGGTCCCCTGGAGCTACttttgctggggactgctaccaagcttacctgt
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        68795 504 +  11725426 AGTTTTACCCCATTTTCACCCCCAAttctgttcttgctctctaaggccacaggc-cctttgcgaggggc-tttttcatactttcagctcagcgggagcctgtggttacctgtaacctccagatctcaccttcacaaacactgcACACCCCTGGCATGCTCTCCAGGCCTGCagcagaacagggccaggcctccctgggtatcatttatccagttgaaacaccccacattgactttaggccattaaccaaagctacttggtagagtt----gatcagccagtgaagaccctgcctccctctgacatctcccaatgcctgcattgctccCGTAGCTCCTGGGAGACAGTGAGGTTGTACATGCTGAGGGAAGGCCTT--TGTGGTGGCACTAAGCCG-CCCCAGCCCTGACCCAGAATATAACGTGGGGCAGTCTTCAGG-CAGGC-GGAGCGGACCCTCAGGGACTTCTGGTCCTCTGGAGCCAC-CTTGCTGGGGACTGTTACCAAGCTTACCTGT
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       665237 490 +    730879 AGTTTTACCCCATTTTCACCCCCAACTCTGTTCTTGCTCTGTAAGGCCACAGGC-CCTTGTCGAAGGGC-TTTTtcacacttccagctcagtgggagcctggggttacctgtgacctccagatcttaccttcacaaacactgcACACCCCTGGCATGCTCTCCAGGTCTGCagcagaacagggccgggcctccctgggtatcatttaaccagtcgaaactccccacattgactttaggccattaaccaaagctacttggtagagtt----gatcagccagtgaagcccctgcctccctccaacatctcccaatgcctgcattgctccCGCGGCTCCTGGGAGACAGCGAGGTTATACACGCTGAGGGAAGGCCTT--TGTGGTGGCACTAAGCCG-CCCCAGCCCTGACCCAGAATATAACGTGGGTCAGTCTTCAGG-CAGGC-CGAGCGGACC--------------GTCCTCTGGAGCCac-cttgctggggactgataccaagcttacctgt
i aotNan1.NW_018503093v1    C 0 C 0
s canFam3.chr3               58194518 491 +  91889043 ------GCCTGGTTTGCACCTCTCATCCTGTGTATGCTGTCTCAGGTCACTGGC-CCTTTCTGAGTGGCTCGTGTTGTACTGTCCGCCTGCTGGAAGCTGGTGGTCACCTGTCACCCCCAGATCT----TTCAC-AATGTTGCACACCC-AGGC-TGCTGTCTGGGCCTGTGGCAGAACAGAGCTGGGCTT-CCTGGGGATCGTTTATCCAGTGGTGAC-CCCCACACGGACCTCAGGCCACTGACAGGCACCCTCCGGTTGAGCGAGCAGGTCAACCAGTGAGGACTCTGCCTCCCTCCAGAGCCTCCCAGGGTCTGCTTGGTCTCTGTA-CTTCTTGGGGGCAGGGGTGTTATACGTGCTAAGGGAGGGACTTGGTGTGGCTG----GAGCTGCCCCCGGCCCTAAGTCAGGGTACG--GGGGGCCAGTTGTCGGGACAGGTGTCAGCAGATACTCAGGCACTCCCTA-CCCCCAGAGCCAC-TTTGCTGGGACCTCCTGCCAAATGCACCTGT
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90174422 3080 + 124595110 I
e dasNov3.JH579681             822570 601 +   1727078 I
e otoGar3.GL873530            5762331 3962 -  36342412 I
e panPan2.chr15              23039257 911 -  99763055 I
e colAng1.NW_012114844v1      4002504 2033 +   5013933 I
e manLeu1.NW_012102632v1      3875596 5032 +   4030761 I
e cerAty1.NW_011999477v1      9755252 1964 +  10730278 I
e macNem1.NW_012011533v1      3888108 2309 +   4820037 I
e rheMac8.chr7              113295358 1922 - 169600520 I
e nomLeu3.chr6               22699778 1588 - 121039945 I
e panTro5.chr15              23342178 906 -  83230942 I

a score=70053.000000
s hg38.chr15_KI270850v1_alt     14053 22 +    430880 ctgtggtctAGGAAAGATTTGT
s gorGor5.CYUI01000037v1      2529935 22 +   2806052 ctgtggtctAGGAAAGATTTGT
i gorGor5.CYUI01000037v1    C 0 C 0
s macFas5.chr7               61585705 22 + 171882078 ctgtggtctAGGAAAGATTTGT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               1313757 22 +  24206276 ctgtggtGTAGGAAAGATTTGT
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113728563 22 - 132174527 CTGTGGTCTAGGAAAGATTTGT
i calJac3.chr10             C 0 I 2538
s saiBol1.JH378378              56226 22 -    125141 ctgtggtctaggaaagatttgt
i saiBol1.JH378378          C 0 I 2664
s cebCap1.NW_016107334v1        69299 22 +  11725426 CTGTGTTCTAGGAAAGATTTGT
i cebCap1.NW_016107334v1    C 0 I 2859
s aotNan1.NW_018503093v1       665727 22 +    730879 ctgtggtctaggaaagatttgt
i aotNan1.NW_018503093v1    C 0 I 1382
s mm10.chr9                  90177502 22 + 124595110 CTATTGCCCAGAATAGGCCAGA
i mm10.chr9                 I 3080 C 0
s canFam3.chr3               58195009 22 +  91889043 CCGTAGTCTAGGAAAGACTTAT
i canFam3.chr3              C 0 I 2
e dasNov3.JH579681             822570 601 +   1727078 I
e otoGar3.GL873530            5762331 3962 -  36342412 I
e panPan2.chr15              23039257 911 -  99763055 I
e colAng1.NW_012114844v1      4002504 2033 +   5013933 I
e manLeu1.NW_012102632v1      3875596 5032 +   4030761 I
e cerAty1.NW_011999477v1      9755252 1964 +  10730278 I
e macNem1.NW_012011533v1      3888108 2309 +   4820037 I
e rheMac8.chr7              113295358 1922 - 169600520 I
e nomLeu3.chr6               22699778 1588 - 121039945 I
e panTro5.chr15              23342178 906 -  83230942 I

a score=4690.000000
s hg38.chr15_KI270850v1_alt     14075 2 +    430880 GG
s gorGor5.CYUI01000037v1      2529957 2 +   2806052 GG
i gorGor5.CYUI01000037v1    C 0 C 0
s macFas5.chr7               61585727 2 + 171882078 GG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               1313779 2 +  24206276 GG
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113731123 2 - 132174527 GG
i calJac3.chr10             I 2538 C 0
s saiBol1.JH378378              58912 2 -    125141 GG
i saiBol1.JH378378          I 2664 C 0
s mm10.chr9                  90177524 1 + 124595110 -G
i mm10.chr9                 C 0 I 1
s dasNov3.JH579681             823171 2 +   1727078 GG
i dasNov3.JH579681          I 601 C 0
e aotNan1.NW_018503093v1       665749 1382 +    730879 I
e canFam3.chr3               58195031 2 +  91889043 I
e cebCap1.NW_016107334v1        69321 2859 +  11725426 I
e otoGar3.GL873530            5762331 3962 -  36342412 I
e panPan2.chr15              23039257 911 -  99763055 I
e colAng1.NW_012114844v1      4002504 2033 +   5013933 I
e manLeu1.NW_012102632v1      3875596 5032 +   4030761 I
e cerAty1.NW_011999477v1      9755252 1964 +  10730278 I
e macNem1.NW_012011533v1      3888108 2309 +   4820037 I
e rheMac8.chr7              113295358 1922 - 169600520 I
e nomLeu3.chr6               22699778 1588 - 121039945 I
e panTro5.chr15              23342178 906 -  83230942 I

a score=6086.000000
s hg38.chr15_KI270850v1_alt     14077 1 +    430880 T
s panTro5.chr15              23343084 1 -  83230942 T
i panTro5.chr15             I 906 C 0
s panPan2.chr15              23040168 1 -  99763055 T
i panPan2.chr15             I 911 C 0
s gorGor5.CYUI01000037v1      2529959 1 +   2806052 T
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22701366 1 - 121039945 T
i nomLeu3.chr6              I 1588 C 0
s rheMac8.chr7              113297280 1 - 169600520 T
i rheMac8.chr7              I 1922 C 0
s macFas5.chr7               61585729 1 + 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3890417 1 +   4820037 T
i macNem1.NW_012011533v1    I 2309 C 0
s cerAty1.NW_011999477v1      9757216 1 +  10730278 T
i cerAty1.NW_011999477v1    I 1964 C 0
s chlSab2.chr29               1313781 1 +  24206276 T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3880628 1 +   4030761 T
i manLeu1.NW_012102632v1    I 5032 C 0
s colAng1.NW_012114844v1      4004537 1 +   5013933 T
i colAng1.NW_012114844v1    I 2033 C 0
s calJac3.chr10             113731125 1 - 132174527 C
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              58914 1 -    125141 C
i saiBol1.JH378378          C 0 C 0
s mm10.chr9                  90177526 1 + 124595110 C
i mm10.chr9                 I 1 C 0
s canFam3.chr3               58195033 1 +  91889043 T
i canFam3.chr3              I 2 C 0
s dasNov3.JH579681             823173 1 +   1727078 C
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       665749 1382 +    730879 I
e cebCap1.NW_016107334v1        69321 2859 +  11725426 I
e otoGar3.GL873530            5762331 3962 -  36342412 I

a score=27149.000000
s hg38.chr15_KI270850v1_alt     14078 2 +    430880 CT
s panTro5.chr15              23343085 2 -  83230942 CT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23040169 2 -  99763055 CT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2529960 2 +   2806052 CT
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22701367 2 - 121039945 CT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113297281 2 - 169600520 CT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61585730 2 + 171882078 CT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3890418 2 +   4820037 CT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9757217 2 +  10730278 CT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1313782 2 +  24206276 CT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3880629 2 +   4030761 CT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4004538 2 +   5013933 CT
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113731126 2 - 132174527 CT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              58915 2 -    125141 CT
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        72180 2 +  11725426 CT
i cebCap1.NW_016107334v1    I 2859 C 0
s mm10.chr9                  90177527 2 + 124595110 CT
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58195034 2 +  91889043 CT
i canFam3.chr3              C 0 I 1319
s dasNov3.JH579681             823174 2 +   1727078 CC
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       665749 1382 +    730879 I
e otoGar3.GL873530            5762331 3962 -  36342412 I

a score=47141.000000
s hg38.chr15_KI270850v1_alt     14080 4 +    430880 GGGA
s panTro5.chr15              23343087 4 -  83230942 GGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23040171 4 -  99763055 GGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2529962 4 +   2806052 GGGA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22701369 4 - 121039945 GGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113297283 4 - 169600520 GGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61585732 4 + 171882078 GGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3890420 4 +   4820037 GGGA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9757219 4 +  10730278 GGGA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1313784 4 +  24206276 GGGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3880631 4 +   4030761 GGGA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4004540 4 +   5013933 GGGA
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113731128 4 - 132174527 GGGA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              58917 4 -    125141 GGGA
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        72182 4 +  11725426 GGGA
i cebCap1.NW_016107334v1    C 0 C 0
s mm10.chr9                  90177529 4 + 124595110 AGGA
i mm10.chr9                 C 0 C 0
s dasNov3.JH579681             823176 4 +   1727078 AGAA
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       665749 1382 +    730879 I
e canFam3.chr3               58195036 1319 +  91889043 I
e otoGar3.GL873530            5762331 3962 -  36342412 I

a score=280799.000000
s hg38.chr15_KI270850v1_alt     14084 26 +    430880 AGGGGCGTCGGAGGCCTCT-TGTCCTC
s panTro5.chr15              23343091 26 -  83230942 AGGGGCCTCGGAGGCCTCT-TGTCCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23040175 26 -  99763055 AGGGGCCTCGGAGGCCTCT-TGTCCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2529966 26 +   2806052 AGGGGCGTCGGAGGCCTCT-TGTCCTC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22701373 26 - 121039945 AGGGGCCTTAGAGGCCTGT-TGTCCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113297287 26 - 169600520 AGGGCCCTCGGAGGCCTCT-TGTCCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61585736 26 + 171882078 AGGGGCTTCGGAGGTCTCT-TGTCCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3890424 26 +   4820037 AGGGGCCTCGGAGGCCTCT-TGTCCTC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9757223 26 +  10730278 AGGGGCCTCGGAGGCCTCT-TGTCCTC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1313788 26 +  24206276 AGGGGCTTTGGAGGTCTCT-TGTCCTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3880635 26 +   4030761 AGGGGCCTCGGAGGCCTCT-TGTCCTC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4004544 26 +   5013933 AGGGGCCTTGGAGGCCTCT-TGTCCTG
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113731132 26 - 132174527 AGGGGCCTCGGAGACCTCT-TGTCCTC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              58921 26 -    125141 AGGAGCCTCGGAGACCTCT-TGTCCTC
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        72186 26 +  11725426 AGGAGCCTCGGAGACCTCT-TGTCCTC
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       667131 26 +    730879 AGGGGCCTCGGAGACCTCT-TGTCCTC
i aotNan1.NW_018503093v1    I 1382 C 0
s mm10.chr9                  90177533 25 + 124595110 AGCAACCTGGAAGGATTTT-GATTGT-
i mm10.chr9                 C 0 C 0
s dasNov3.JH579681             823180 27 +   1727078 GGGGACCTGGGAAGCCTTTATGTCCTC
i dasNov3.JH579681          C 0 C 0
e canFam3.chr3               58195036 1319 +  91889043 I
e otoGar3.GL873530            5762331 3962 -  36342412 I

a score=1753984.000000
s hg38.chr15_KI270850v1_alt     14110 189 +    430880 TGTAGGTTCTGCTGCTGCCACATTGGGGCAGTGCGTGTG-AGGTGTGGGGACACTCATGCATTGGTGCATGTGCATTGCCTATCC-GCTGTGCAGCCTGTGTG--CACC-------CGTGTGAGCGTCCCTGTGTGTGAGCACAGGTGTGCATTGCCCtgggtgggtgggtggcttggg-gtgggCATTGGCTGCTTGTAT
s panTro5.chr15              23343117 189 -  83230942 TCCAGGTTCTGCTGCTGCCACATTGGGGCAGTGTGTGTG-AGGTGTGGGGACACTCATGCATTGGTGCACATGCATCGCCTGTCC-ACTGTGCAGCCTGTGTG--CACC-------AGTGTGAGAGTCCCTGTGTGTGAGCACGGGTGTGCGTTGCCCtgcgtgggtgggtgggttggg-gtgggCATTGGCTGCTTGTAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23040201 189 -  99763055 TCCAGGTTCTGCTGCTGCCACATTGGGGCAGTGTGTGTG-AGGTGTGGGGACACTCATGCATTGGTGCACATGCATCGCCTGTCC-ACTGTGCAGCCTGTGTG--CACC-------AGTGTGAGAGTCCCTGTGTGTGAGCACGGGTGTGCGTTGCCCtgcgtgggtgggtgggttggg-gtgggCATTGGCTGCTTGTAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2529992 189 +   2806052 TCTAGGTTCTGCTGCTGCCACATTGGGGCAGTGCGTGTG-AGGTGTGGGGACACTCATGCATTGGTGCATGTGCATTGCCTGTCC-GCTGTGCAGCCTGTGTG--CACC-------CATGTGAGCATCCCTGTGTGTGAGCACGGGTGTGCATTGCCCtgggtgggtgggtggcttggg-gtgggCATTGGCTGCTTGTAT
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22701399 189 - 121039945 TCTAGGTTCTGCTGCTGCCGCATTGGGGCAGTGTGTGTG-AGGTGTGGGGACACTCATGCATTGGTGTACATGCATCGCCTGTCC-ACTGTGCAGCCTGTGTG--CACC-------AGTGTGAATGTCCCTGTGTGTGAGCATGGGTGTGCATTGCCCtgggtgggcgggtgggttggg-gtgggCATTGGCTGCTTGTAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113297313 189 - 169600520 TCCAGGTTCTGCTGCTGCCGGGTTGGGGCAGTGTGTGTG-AGGTGTGGGGACACTCATGCATTCGTATACGTGCATCACCTGTCC-GCTGTGCAGCCTGTGTG--TACC-------CGTGTCAGCGTCCCTGTGTGTGAGCATGGGTGTGCGTTGCCCTGGGTGGGTGGGTGGGTTGGG-GTGAGCATTGGCTGCTTGTAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61585762 188 + 171882078 TTCAGGTCCTGGGGCTGCCGGGTTGGGGTAGTGTGTGTG-AGGTATGGGGACACTCATGCATTGGTGTACGTGCATCACCTGTCC-ACTGTGCAGCCTGTGTG--CACC-------CGTGTGAGCGTCCCTGTGTGTGAGCATGGGTGTGCGTTGCCCtgggtgggagggtgggtt-gg-gtgggCATTGGCTCCTTGTAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3890450 189 +   4820037 TCCAGGTTCTGCTGCTGCCGGGTTGGGGCAGTGTGTGTG-AGGTGTGGGGACACTCATGCATTCGTATACGTGCATCACCTGTCC-GCTGTGCAGCCTGTGTG--TACC-------CGTGTCAGCGTCCCTGTGTGTGAGCATGGGTGTGCGTTGCCCTGGGTGGGTGGGTGGGTTGGG-GTGAGCATTGGCTGCTTGTAT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9757249 189 +  10730278 TCCAGGTTCTGCTGCTGCCGGGTTGGGGCAGTGTGTGTG-AGGTGTGGGGACACTCATGCATTCGTGTACATGCATCACCTGTCC-GCTGTGCAGCCTGTGTG--TACC-------CGTGTCAGCGTCCCTGTGTGTGAGCATGGGTGTGTGTTGCCCTGGGTGGGCGGGTGGGTTGGG-GTGAGCATTGGCTGCTTGTAT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1313814 195 +  24206276 TTCAGGTCCTGGGGCTGCCGGGTTGGGGTAGTGTGTGTG-AGGTATGGGGACACTCATGCATTGGTGTACGTGCATCACCTGTCCAACTGTGCAGCGTGCAT---CACCTGTCCAACGTGTGAGCGTCCCTGTGTGTGAGCATGGGTGTGCGTTGCCCtgggtgggagggtgggtt-gg-gtgggCATTGGCTCCTTGTAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3880661 189 +   4030761 TCCAGGTTCTGCTGCTGCTGGGTTGGGGCAGTGTGTTTG-AGGTGTGGGGACACTCATGCATTCGTGTACGTGCATCACCTGTCC-GCTCTGCAGCCTGTGTG--TACC-------CGTGTCAGCGTCCCTGTGTGTGAGCATGGGTGTGTGTTGCCCTGGGTGGATGGGTGGGTTGGG-GTGAGCATTGGCTGCTTGTAT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4004570 188 +   5013933 TCCAGGTTCTGCTGCTGCCGGGTTGGGGCAGTGTGTGTG-AGGTGTGGGGACACTCATGCATTGGTGTACGTGCATCACCTGTCC-GCTGCGCAGCCTGTGTG--TACC-------CATGTCAGCGTCCCTGTGTGCGAGCATGGGTGTGCGTTGCCCT-GGTGGGTGGCTGGGTTGGG-GTGATCATTGGCTGCTTGTAT
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113731158 168 - 132174527 TCCAGGTTCTGCCGCTGCCAGGTTGGGGCAGTGTGTGTG-AGGTGTGGGGACACTCGTGCATTGGTGCTTGTGCATCACGTGTCA-GCTGCGCACCCTGCGTG--CACC-------TGTGCCAGCATCCCTGTGTGTGAGCATGGGTGTGCGTCGTGCTGTGTGGA--------TCGGG-GTGG-------------GCAT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              58947 167 -    125141 TCCAGGTTCTGCTGCTGCCAGGTTGGGGCAGTGTGTGTG-AGGTGTGGGGACACCCGTGCATTG--------------CCTGTCA-GCTGTGCACCCTGCGTG--CACC-------CGTGCCAGCGTCCCTGTGTGGGAGCATGGGTGTGCGTCACGCTGTGTGGA--------TCGGG-GTGGGTATCGGCTGCTTGTAT
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        72212 179 +  11725426 TCCAGGTTCTGCTGCTGTCAGGTTGGGGCA--GTGTGTG-AGGTGTGGGGACACTCATGCATTGGCCCCCATGCATCGCCTGTCA-GCTGTGCACCCTGCGTG--CACC-------CGTGCCAGTGTCCCTGTGTGTGAGCATGGGTGTGCCTCACACTGTGTGGA--------TTGGG-GTGGGCATTGGCTGCTGGTAT
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       667157 181 +    730879 TCCAGGTTCTGCCGCTGTCAGGTTGGGGCAGTGTGTGTG-AGGTATGGGGACGTTCGTGCATTGGCCCCCGTGCATTGCCTGTCA-GCTGTGCACCCTGTGTG--CACC-------CGTGCCAGCGTCCCTGTGTGTGAGCATGGGTGTGTGTCACGCTGTGTGGA--------TCGGG-GTGGGCATTGGCTGCCTGTAT
i aotNan1.NW_018503093v1    C 0 C 0
s mm10.chr9                  90177558 175 + 124595110 -----GATCTGTCACTGCCGGCTTGGGGCAGTGTGAGTGCAGGTATGGAGATGTGCAGGCACTAGTGCATACATGTCTGCAGTAA-TGTGTGCAGCTGGTATGCCCTCC-------CTTGTGTGATCACATTTGTGTGATCA--GATGTGCATGGTCCCGGGTGG---------CTGGA-GTGGGTACTGGGTTCCATTT-
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58196355 171 +  91889043 TGCAGACTCTGTTGTCGCCCGTTTGGGGAAGCCTGCATGCAGGGGTGAGGACGTTCATGTGTGTGTGTGCCTG---TGCACGTCC-TGAGTGCAGCCCACATG--CGCT-------AG-GTGAGC-CCCCTGTGTGTGAGCAGGGGTGTGCATGCCTTTGCATGGG---------------TCAGTGCTGGCTGTCCAGAC
i canFam3.chr3              I 1319 I 2
s dasNov3.JH579681             823207 137 +   1727078 CCCGTGTTCTGC-GCTGCTTGGGTTGGGAAGTATGTGC--AGGTGTGGA-------------------------------------CATGGGCAG-----GTG--CACC-------TGTGCGAGCATTCCTGTGCACA--CGTGGGAGTGCATCCCCTGGTGTGGG--------TTGGGCATGGGCATACGCTGACCTCAT
i dasNov3.JH579681          C 0 C 0
e otoGar3.GL873530            5762331 3962 -  36342412 I

a score=8235410.000000
s hg38.chr15_KI270850v1_alt     14299 656 +    430880 CCTTCATCC-TGG-TGACAGCCTGA------CC--CCCTCATCTCTTGGGCAGGTGGCTGGCCTGTTTCACGACCCCAGCATTGGGAACCCCATCCACATGACCATTGTGCTCCTGGTCCTTCTGGAAGATGAGGAGGTGAGCGGTCATGTGGTCCCACGCTGCCTGGCAAT-G------GCTTCGGCTGCCAGAGCC-CTCCTGCCCC----ATGACCTGTGCTGCTCTGTATGGAAGGGCACAGTGAAGGCCTCCTTGGACTGGACTGTGTCCCCTGCCAC-TCCCTGGTTCCTGACTGACCCTCTCTCAGGTCCCAGGTCTCCTGCAGGAGGTTCCTA-CAGGAGGG---ATGGTCAGGCCGGAAGCT-------GGA-CTGG-TGCCTGCGGGCCTCC-----------CACTGCCCTGCTGGGCCTCTGTCTCCTGCCTTTGTATGGGGGAGAATTGGGCCTGACCTTCTTGGAACTCAG-GGGAGGCATGAGCAGTCACTCTCTCTGCCCCCAGGAGGACCTAAAGATCATGCACCATGCAGACAACACCCTGAAGAGCTTCTGCAAGTGGCAGAAAAGCATCAACATGAAGGGAGACGCCCACCCCCTGCAGCATGACACTGCCATCCTGCTCATCAGGTACTG-CAGCT-------GCAGG----AGGGTGGGAGCCTGCATCTCAGGGAGGTGCTTCCCAGCCCTAG
s panTro5.chr15              23343306 655 -  83230942 CCTTCATCC-TCG-TGACAGCCTGA------CC--CCCCCATCTCTTGGGCAGGTGGCTGGCCTGTTTCATGACCCCAGCATTGGGAACCCCATCCACATCACCATTGTGCGCCTGGTCCTGCTGGAAGATGAGGAGGTGAGCGGTCATGTGGTCCCACGCTGCCCAGCAAT-G------GCTTCGGCTGCCAGAGCC-CTCCTGCCAC----ATGACCTGTGCTGCTCTTTATGGAAGGGCACAGTGAAGGCCTCCTTGGCCTGGACCGTGTCCCCTGCCAC-CCCCTGGTTCCTGACTGACCCTCTCTCAGGTCCCAGGTCCTCTGCAGGAGGTTCCTA-CAGGAGGG---ATGGTCAGGCTGGAAGCT-------CGA-CTGG-TGCCTGCGGTCCTCC-----------CACTGCCCTGCTGGGCCTCTGTCTCCTGCCTTCGTATGGGGGAGAATTGGGCCTGACCTTCTTGGAACTCAG-GGGAGGCATGAGCAGTCACTCTCTCTGCCCCCAGGAGGACCTAAAGATCACGCACCATGCAGACAACACCCTGAAGAGCTTCTGCAAGTGGCAGAAAAGCATCAACATGAAGGGGGACGCCCATCCCCTGCACCATGACACCGCCATCCTGCTCACCAGGTACTG-CAGCC-------GCAGG----AGGGTGGGAGCCTGCATCTCA-GGAGGTGCTTCCCGGCCCTGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23040390 655 -  99763055 CCTTCATCC-TCG-TGACAGCCTGA------CC--CCCCCATCTCTTGGGCAGGTGGCTGGCCTGTTTCATGACCCCAGCATTGGGAACCCCATCCACATCTCCATTGTGCGCCTGGTCCTGCTGGAAGATGAGGAGGTGAGCGGTCATGTGGTCCCACGCTGCCCGGCAAT-G------GCTTCGGCTGCCAGAGCC-CTCCTGCCAC----ATGACCTGTGCTGCTCTTTATGGAAGGGCACAGTGAAGGCCTCCTTGGCCTGGACCGTGTCCCCTGCCAC-CCCCTGGTTCCTGACTGCCCCTCTCTCAGGTCCCAGGTCCTCTGCAGGAGGTTCCTA-CAGGAGGG---ATGGTCAGGCTGGAAGCT-------CGA-CTGG-TGCCTGCGGGCCTCC-----------CACTGCCCTGCTGGGCCTCTGTCTCCTGCCTTCGTATGGGGGAGAATTGGGCCTGACCTTCTTGGAACTCAG-GGGAGGCATGAGCAGTCACTCTCTCTGCCCCCAGGAGGACCTAAAGATCACGCACCATGCAGACAACACCCTGAAGAGCTTCTGCAAGTGGCAGAAAAGCATCAACATGAAGGGGGACGCCCATCCCCTGCACCATGACACCGCCATCCTGCTCACCAGGTACTG-CAGCC-------GCAGG----AGGGTGGGAGCCTGCATCTCA-GGAGGTGCTTCCCGGCCCTGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2530181 654 +   2806052 CCTTCATCC-TGG-TGACAGCCTGA------CC--CCCTCATCTC--GGGCAGGTGGCTGGCCTGTTTCACGACCCCAGCATTGGGAACCCCATCCACATGACCATTGTGCTCCTGGTCCTTCTGGAAGATGAGGAGGTGGGCGGTCATGTGGTCCCACGCTGCCTGGCAAT-G------GCTTCGGCTGCCAGAGCC-CTCCTGCCCC----ATGACCTGTGCTGCTCTGTATGGAAGGGCACAGTGAAGGCCTCCTTGGACTGGACTGTGTCTCCTGCCAC-TCTCTGGTTCCTGACTGACCCTCTCTCAGGTCCCAGGTCCCCTGCAGGAGGTTCCTA-CAGGAGGG---GTGGTCAGGCCGGAAGCT-------GGA-CTGG-TGTCTGCGGGCCTCC-----------CACTGCCCTGCTGGGCCTCTGTCTCCTGCCTTTGTATGGGGGAGAATTGGGCCTGACCTTCTTGGAACTCAG-GGGAGGCATGAGCAGTCACTCTCTCTGCCCCCAGGAGGACCTAAAGATCATGCACTATGCAGACAACACCCTGAAGAGCTTCTGCAAGTGGCAGAAAAGCATCAACATGAAGGGGGACGCCCACCCCCTGCAGCATGACACTGCCATCCTGCTCATCAGGTACCG-CAGCT-------GCAGG----AAGGTGGGAGCCTGCATCTCAGGGAGGTGCTTCCCAGCCCTAG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22701588 657 - 121039945 CCTTCATCC-TGG-TGACAGCCTGA------CC--CCCCCATCTCTTGGGCAGGTGGCTGGCCTGTTTCATGACCCCAGCATTGGGAACCCCATCCACATCACCATTGTGCGCCTGGTCCTGCTGGAAGATGAGGAGGTGAGCGGTCATGTGGTCCCACGCTGCCCGGCAAT-G------GCTTCGGCTCCCAGAGCC-CTCCTGCCCC----ATGACCTGTGCTGCTCTGTATGGAAGGCCACAGTGAAGGCCTCCTTGGCCTGGACCGTGTCCCCTGCCAC-CCCCTGGTTCCTGACTGACTCTCTCTCAGCTCCCAGGTCCCCTGCAGGAGGTTCCTA-CAGGAGGG---GTGGTCAGGCTGGAAGCT-------GGA-TTGG-TGCCTGCGGGCCTCC-----------CACTGCCCTGCTGGGCCTCTGTCTCCTGCCTTTGTATGAGGGAGAATTGGGCCTGACCTTCTTGGAACTCAG-GGGAGGCATGAGCAGTCACTCTCTCTGCCCCCAGGAGGACCTAAAGATCACGCACCATGCAGACAACACCCTGAAGAGCTTCTGCAAGTGGCAGAAAAGCATCAACATGAAGGGAGACACGCACCCCCTGCACCACGACACCGCCATCCTGCTCACCAGGTACCGCCAGCT-------GCAGG----AGGATGGGAGCCTGCATCTCAGGGAGGTGCTTCCCCGCCCTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113297502 657 - 169600520 CCTTCATCC-TGG-TGACAGCCTGA------CC--CCCCCATCTCTTGGGCAGGTGGCTGGCCTGTTTCATGACCCCAGCATTGGGAACCCCATCCACATCACCATTGTGCGCCTGGTCCTTCTGGAAGATGAAGAGGTGAGCGTTCATGTGGTCCCACGATGCCCGGCAAT-G------GCTTCCGCTGCCAGAGCC-CTCCTGCACC----ATGACCTGTGCTGCTCTGTATGGAAGGGCACAGTGAAGGCCTCCTTGGCCTGGACTGTGTCCCCTGCCAT-CCCCTGGTTCCTGACTGACCCTCTCTCAGGTCCCAGGTCCTCTGCAGGAGGTTCCTA-CAGGAGGG---GTGGTCAGGCCAGAAGAT-------GGA-CTGG-TGCCTGCTGGCCTCC-----------CACTGCCCTGCTGGGTCTCTGTCTCCTGCCTTTATATGGAGGAGAATTGGGCCTGACCCTCTCAGAACTCAG-AGGAGGCATGAGTGGTCATTCTCTCTGCCCCCAGGAGGACCTAAAGATCACGCACCATGCAGACAACACCCTGAAGAGCTTTTGCAAGTGGCAGAAAAGCATCAACATGAAGGGGGACACCCACCCCCTGCACCATGACACCGCCATCCTGCTCACCAGGTACTGCCAGCT-------GCAGG----AGGGTGGGAGCCTGCATCGCAGGGAGGTGCTTCCCGGCCCTGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61585950 657 + 171882078 CCTTCATTC-TGG-TGACAGCCTGA------CC--CCCTCATCTCTTGGGCAGGTGGCTGGCCTGTTTCATGACCCCAGCATTGGGAACCACATCCACATCACCACTGTGCGCCTGGTCCTTTTGGAAAATGAAGAGGTGAGTGGTCATGTGGTCCCATGGTGCCCAGCAAT-G------GCTTTGGCTGCCAGAGCC-CTCCTGCACC----ATGACCTGTGCTGCTCTGTATGGAAGGGCATAGTGAAGGCCTCCTTGGCCTGGACCGTGTCCCCTGCCAA-CCCCTGGTTCCTGAAGGACCCTCTCTCAGGTCCCAGGTCCCCTGCAGGAGGTTCCTA-CAGGAGGG---GTGGTCAGGCCAGAAGCT-------GGA-CTGG-TGCCTGTGGGCCTCC-----------CACTGCCCTGCTGGGCCTCTGTCTCCTGCCTTTGTATGGAGGACAATGAGGCCTGACCTTCTTGGAACTCAG-GGGAGGCATGAGCAGTCATTCTCTCTGCTCCCAGGAGAACCTAAAGACCACACACCATGCAGACAACACCCTGAAGAGCTTCTGCAAGTGGCAGAAAAGCATCAACATAAAGAGGGACGCCCACCCCCTGTACCATGACACCGCCATCCTGCTCAGCAGGTACCATCAGCC-------GCAGG----AGGGTGGGAGCCTACATCTCAGGGAGGTGCTTCACAGCCCTGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3890639 656 +   4820037 CCTTCATCG-TGG-TGACAGCCTGA------CC--CCC-CATCTCTTGGGCAGGTGGCTGGCCTGTTTCATGACCCCAGCATTGGGAACCCCATCCATATCACCATTGTGCGCCTGGTCCTTCTGGAAGATGAAGAGGTGAGCGTTCATGTGGTCCCACGATGCCCGGCAAT-G------GCTTCCACTGCCAGAGCC-CTCCTGCACC----ATGACCTGTGCTGCTCTGTATGGAAGGGCACAGTGAAGGCCTCCTTGGCCTGGACTGTGTCCCCTGCCAT-CCCCTGGTTCCTGACTGACCCTCTCTCAGGTCCCAGGTCCTCTGCAGGAGGTTCCTA-CAGGAGGG---GTGGTCAGGCCAGAAGCT-------GGA-CTGG-TGCCTGCTGGCCTCC-----------CACTGCCCTGCTGGGTCTCTGTCTCCTGCCTTTATATGGAGGAGAATTGGGCCTGACCCTCTCAGAACTCAG-AGGAGGCATGAGCGGTCATTCTCTCTGCCCCCAGGAGGACCTAAAGATCACGCACCATGCAGACAACACCCTGAAGAGCTTTTGCAAGTGGCAGAAAAGCATCAACATGAAGGGGGACACCCACCCCCTGCACCATGACACCGCCATCCTGCTCACCAGGTACTGCCAGCT-------GCAGG----AGGGTGGGAGCCTGCATCGCAGGGAGGTGCTTCCCGGCCCTGC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9757438 657 +  10730278 CCTTCATCC-TGG-TGACAGCCTGA------CC--CCCCCATCTCTTGGGCAGGTGGCTGGCCTGTTTCATGACCCCAGCATTGGGAACCCCATCCACATCACCATTGTGCGCCTGGTCCTTCTGGAAGATGAAGAGGTGAGCGTTCATGTGGTCCCACGCTGCCCGGCAAT-G------GCTTCCACTGCCAGAGCC-CTCCTGCACC----ATGACCTGTGCTGCTCTGTATGGAAGGGCACAGTGAAGGCCTCCTTGGCCTGGACTGTGTCCCCTGCCAC-CTCCTGGTTCCTGACTGACCCTCTCTCAGGTCCCAGGTCCTCTGCAGAAGGTTCCTA-CAGGAGGG---GTGGTCAGGCCAGAAGCT-------GGA-CTGG-TGCCTGCTGGCCTCC-----------CACTGCCCTGCTGGGTCTCTGTCTCCTGCCTTTATATGGAGGAGAATTGGGCCTGACCCTCTCAGAGCTCAG-GGGAGGCATGAGCGGTCATTCTCTCTGCCCCCAGGAGGACCTAAAGATCACGCACCATGCAGACAACACCCTGAAGAGCTTTTGCAAGTGGCAGAAAAGCATCAACATGAAGGGGGACACCCACCCCCTGCACCATGACACCGCCATCCTGCTCACCAGGTACTGCCAGCT-------GCAGG----AGGGTGGGAGCCTGCATCGCAGGGAGGTGCTTCCCGGCCCTGC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1314009 657 +  24206276 CCTTCATTC-TGG-TGACAGCCTGA------CC--CCCTCATCTCTTGGGCAGGTGGCTGGCCTGTTTCATGACCCCAGCATTGGGAACCACATCCACATCACCACTGTGCGCCTGGTCCTTCTGGAAAATGAAGAGGTGAGTGGTCATGTGGTCCCATGGTGCCCAGCAAT-G------GCTTTGGCTGCCAGAGCC-CTCCTGCACC----ATGACCTGTGCTGCTCTGTACGGAAGGGCACAGTGAAGGCCTCCTTGGCCTGGACCGTGTCCCCTGCCAA-CCCCTGGTTCCTGAAGGACCCTCTCTCAGGTCCCAGGTCCCCTGCAGGAGGTTCCTA-CAGGAGGG---GTGGTCAGGGCAGAAGTT-------GGA-CTGG-TGCCTGTGGGCCTCC-----------CACTGCCCTGCTGGGCCTCTGTCTCCTGCCTTTGTACGGAGGACAATTAGGCCTGACCTTCTTGGAACTCAG-GGGAGGCATGAGCAGTCATTCTCTCTGCTCCCAGGAGGACCTAAAGACCACACACCATGCAGACAACACCCTGAAGAGCTTCTGCGAGTGGCAGAAAAGCATCAACATGAAGAGGGATGCCCACCCCCTGTACCATGACACCGCCATCCTGCTCAGCAGGTACCACCAGCC-------GCAGG----AGGGTGGGAGCCTACATCTCAGGGAGGTGCTTCACGGCCCTGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3880850 657 +   4030761 CCTTCATCC-TGG-TGACAGCCTGA------CC--CCCCCATCTCTTGGGCAGGTGGCTGGCCTGTTTCATGACCCCAGCATTGGGAACCCCATCCACATCACCATTGTGCGCCTGGTCCTTCTGGAAGATGAAGAGGTGAGCGTTCATGTGGTCCCACGCTGCCCGGCAAT-G------GCTTCCGCTGCCAGAGCC-CTCCTGCACC----ATGACCTGTGCTGCTCTGTATGGAAGGGCACAGTGAAGGCCTCCTTGGCCTGGACTGTGTCCCCTGCCAC-CTCCTGGTTCCTGACTGACCCTCTCTCAGGTCCCAGGTCCTCTGCAGGAGGTTCCTA-CAGGAGGG---GTGGTCAGGCCAGAAGCT-------GGA-CTGG-TGCCTGCCGGCCTCC-----------TACTGCCCTGCTGGGTCTCTGTCTCCTGCCTTTATATGGAGGAGAATTGGGCCTGACCCTCTCAGAACTCAG-AGGAGGCATGAGCGGTCATTCTCTCTGCCCCCAGGAGGACCTAAAGATCACGCACCATGCAGACAACACCCTGAAGAGCTTTTGCAAGTGGCAGAAAAGCATCAACATGAAGGGGGACACCCACCCTCTGCACCATGACACCGCCATCCTGCTCACCAGGTACTGCCAGCT-------GCAGG----AGGGTGGGAGCCTGCATCGCAGGGAGGTGCTTCCCGGCCCTGC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4004758 657 +   5013933 CCTTCATCC-TGG-TGACAGCCTGA------CA--CCCCCATCTCTTGGGCAGGTGGCTGGCCTGTTTCATGACCCCAGCATTGGGAACCCCATCCACATCACCATTGTGCGCCTGGTCCTTCTGGAAGATGAAGAGGTGAGCAGTCATGTGGTCCCACGCTGCCCGGCAAT-G------GCTTCGGCTGCCAGAGCC-CTCCTGCACC----ATGACCTGTGCTGCTCTGTATGGAAGGGCACAGTGAAGGCCTCCTTGGCCTGGACTGTGTCCCCTGCCAC-CCCCTGGTTCCTGACTGACCCTCTCTCAGGTCCCAGGTCCTCTGCAGGAGGTTCCTA-CAGGAGGG---GTGGTCAGGCCAGAAGCT-------GGA-CTGG-TGCCTGTGGGCCTCC-----------CACTGCCCTGCTGGGCCTCTGTCTCCTGCCTTTATATGGAGGAGAATTGGGCCTGACCCTCTCGGAACTCAG-GGGAGGCATGAGCGGTCATTCTCTCTGCCCCCAGGAGGACCTAAAGATCACGCACCACGCAGACAACACCTTGAAGAACTTCTGCAAGTGGCAGAAAAGCATCAACATGAAGGGGGACGCCCACCCCCTGCACCATGACACTGCCATCTTGCTCACCAGGTACTGCCAGCT-------GCAGG----AGGGTGGGAGCCTGCATCTCAGGGAGGTGCTTCACGGCCCTAC
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113731326 651 - 132174527 TCTTCATCC-TGA-TGGCAGCCTGA------TTGACCCCCCTCTCTTGGGCAGGTGGCCGGTCTATTTCATGACCCCAGCATCGGGAACCCCATCCACATCACCATTGTGCGCCTGGTCCTGCTGGAAGATGAGGAGGTGAGTGGCCCTGTGGTCCCACGCTGCCTGGCAAT-G------CCAT-GGCTGCCAGAGTC-CTCTTGCCCC----ATGACCTGTGCTGCGCTGTATGGAAGAGCACAGTGAAGGCTTCCTTGGCCTGGACTGTGTCCCCTGCCACGCCCCTGGTCCCTGACTGATCCTTTCTCAGGTCCC-------CTGCAGGAGGTTCCTA-CAGGAGAG---GTGGTCAGGCCAGAAGCG-------GGA-CCAG-TGCCCGCAGGCCTCC-----------CACCACCCTGCTGGACCTGTGTCTCCTGCC-TTGTATGGAGGAGAATTGGGCTTGACCCTCTTGGAACTCAG-GGGAGGCGTGAGCAGTCACTCTCTCTGCCCCCAGGAGGACCTAAAGATCACGCACCATGCAGACAACACCCTGAAGAGCTTTTGCAAGTGGCAGAAAAGCATCAACATGAAGGGGGATGCCCACCCCCTGCACCATGACACCGCCGTCCTGCTCACCAGGTGCGGTCAGCC-------ACAGG----AGGGTGGGGGCCTGCAGCTCAGGGAGGTGCTTCCTGGCGCCGA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              59114 641 -    125141 CCTTCATCC-TGG-CGGCAGCCTGA------CTGACCCCCTTCTCTTGGGCAGGTGGCCGGCCTATTTCATGACCCCAGCATTGGGAACCCCATCCATATCACCATTGTGCGCCTGGTCCTGCTGGAGGATGAGGAGGTGAGTAGCCATGTGGTCCCACGCTGCCAGGCAGT-G------CCAT-GGCTGCCAGAGTC-TCCTTGCCCCAATGACCACCTGTGCTGCTCTGTATGGAAGGGCACAGCGAAGCCCTCCTTGGCCTGGACTGTGTCCCCTGCCAC-CCCCTGGTCCCTGATTGACCCTGTCTCAGGTCCC-------CTGCAGGAGGTTCCTA-CAGGAGAG---GTGGTCAGGCCAAAAGCG-------GGA----------------CCTCC-----------CACTGCCCTGCTGGGCGTCTGTCTCCTGCCTTTGTATGGAGGAGAATTGGGCTCGACCCTCTTGGAACTCAG-GGGAGGCGTGAGCAGTCACTCTCTCTGCCCCCAGGAGGACCTAAAGATCACGCACCACGCAGACAACACCCTGAAGAGCTTTTGCAAGTGGCAGAAAAGCATCAACATGAAGGGGGACGCCCACCCCCTGCACCATGACACCGCCGTCCTGCTCACCAGGTGCCGCCAGCC-------GCAGG----AGGGTGGGAGCCTGCAGCTCAGGGACGTGCTTCCTGGCCCCAC
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        72391 652 +  11725426 CCTTCATCC-TGG-CGGCAGCCTGA------ACGACTCCCATCTCTTGGGCAGGTGGCTGGCCTATTTCATGACCCCAGCATCGGGAACCCCATCCACATCACAATTGTGCGCCTAGTCCTGCTCGAGGATGATGAGGTGAGTGGCCATGTGGTCCCATGCTGCCTGGCAGT-G------CCAT-GGCTGCCAGAGTC-CTCTTGCCCC----ATGACCTGTGCTGGTCTGTATGGAGGGGCACAGCGAAGCCCTCCTTGGCCTGGACTGTGTCCCCTGCCAC-CCCCTGGTCCCTGACTGACCCTTTCTCAGGTCCC-------CTGCAGGAGGTTCCTA-CAGGAGAG---GTGGTGAGGCCAAAAGTG-------GGGACTGG-TGCCCGTGGGCCTCC-----------CACTGCCCTGCTGGGCCTCTGTCTCCTGCCTTCATATGGAGGAGAATTTGGCTTGACGCTCTTGGAACTCAG-GGGAGGTGTGAGCAGCCACTCTCTCTGCCCCCAGGAGGACCTAAAGATCACGCACCACGCAGACAACACCCTGAAGAGCTTTTGCAAGTGGCAGAAAAGCATCAACATGAAGGGGGACGCCCACCCCCTGCACCACGACACCGCCGTCCTGCTCACCAGGTGCCGCCAGCC-------GCAGG----AGGGTGGGATCCTGCAGCCCAGGGAGGTGCTTCCTGGCCCCAA
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       667338 636 +    730879 GCTTCATCC-TGG-TGGCAGCCTGA------CTGACCCCCCTCTCTTGGGCAGGTGGCCGGCCTGTTTCATGACCCCAGCATCGGGAACCCCATCCACATCACCATTGTGCGTCTAGTCCTGCTGGAGGATGAGGAGGTGAGTGGCCCTGT-GTCCCACGCGGCCCGGCAGT-G------CCAT-GGCTGCCAGAGTC-CTCTTGCCC-----ATGACCTGTGCTGCTCTGTATGGAAGGGCACAGCGAAAGCCTCCTTGGCCTGGACTGTGTCCCCTGCCAC-CCCCTGGTCCCTGACTAACTCTTTCTCGGGTC--------------------TCCTA-CAGGAGAG---GTGGTCAGGCCAAAAGCG-------GGA-CCGG-TGCCCGCGGGCCTCC-----------CACTGCCCTGCTGGGCCTCTGTCTCCTGCCTTTGTGTGGAGGAGAATTGGGCTTGACCCTCTTGGAACTCAG-GGGAGGCGTGAGCAGTCACTCTCTCTGCCCCCAGGAGGACCTAAAGATCATGCACCACGCAGACAACACCCTGAAGAGCTTTTGCAAGTGGCAGAAAAGCATCAACATGAAGGGGGACGCCCACCCCCTGCACCATGACACCGCCGTCCTGCTCACCAGGTGCCATCAGCC-------GCAGG----AGGGTGGGAGCTTGCAGCTCAGGGAGGCGCTTCCTGGCCCCGC
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5766293 664 -  36342412 CCTATGTCC-TTC-TTATAGCCTGA----------TCCCCATCTCTTGGACAGGTGGCTGGCCTGTTTCATGACCCAAGCATTGGGAACCCTATCCACATCACTGTTGTGCGCCTGGTCCTGCTGGAGGATGAGGAGGTGAGAGGCC-TGTGGCCCCATCCACCCCTGCAGTGG------GCATCAGCTGCCAGAGCC-CTCCTGC--C----ATTGCCTGAGCTGCTCTGTATGAAAAGGCATAGTGGCAGCCTCCTTGACCTGAACAGTGTCTTCTGACAC-CCCCT-----CCAACTGGGTCTCTCTCAGGTCTCAGGTCCTTCCTAGGAGGTGCCTG-TGGGAGGG---GTGGTCAGATGGGAGGAT-------GGA-CTGC-AGCC-GCAGGCCTGCTGCCTGTCCTGCACTGCCGCTCTAGGCCTCTGTTTACTGCCTTCCTGGGGAGAAAAATTGGGTCTGACTCTTTCGGAGCCCAG-GAGAAGCATGAGCG---ACTCTATCTGCCTGCAGGAGGACCTAAAGATCACACACCATGCTGATAACACCCTGCGGAGCTTCTGCAAATGGCAGAAAAGCATCAACATGAAGGGAGACACCCACCCCCTGCACCACGACACTGCCATCCTGCTCACCAGGTGCC--CAGTCGGGAGAGGCAGGCTCAAGGACAGGAGAGCCACGCCTGGGGTGGTGCTCCCTGGCCCTGG
i otoGar3.GL873530          I 3962 C 0
s mm10.chr9                  90177733 576 + 124595110 CTTATATCC-TAG-TTGTAACCTGATTCCTCTC--CCCGCCCCTCTTGGATAGGTGGCTGGACTCTTTCATGATCCAAGCATTGGGAACCCCATTCACATCAGCATTGTGCGCCTTATCATACTGGAAGACGAGGAGGTGAGAGGTCACATAGTCCCAAGCTGTCCC-CAAC-A------G-----------GAAGCT-TTCCAGCTCT----GTGCCTTGAG-TGCCCTA---GGAAGGACA-AGTAGAGGCCTCCTGGACCTTGACAGTGTCCTCTGATAC-TTCTT-GTCCTTGAGACAATCTTTGTCCAGTTACA---------------------A-CA-GAGGG---GTGG--AGGCTGGGAG----------GC-CTGG-T--CAGTCTGTCTCT----------------------TTAATCTCTGACTCCTGTCATGGTGTGGGAGTAGATTGGGCTTAATCCCC--AGAGCTCAGTATGAGTCCTGAGCCACTATTCTTCCCCTCTGCAGAAGGACTTAAAGATCACACACCATGCCGAAGAGACTCTGAAGAACTTCTGTAGGTGGCAGAAGAACATTAACATAAAGGGGGATGACCACCCACAGCACCATGACACTGCCATCCTGCTCACCAGGTATCT-CACCA-------G--GA----AGGGTGGGAGT-------------------------GCCTTAG
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58196528 545 +  91889043 TCTCTGTCCAGGG-CAACAGCCTAA------CC-----CCATCTCTCGGGCAGGTGGCCGGCCTGTTTCACGACCCCAGCATTGGGAACCCCATCCACATCACCATCGTGCGCCTGGTCCTGCTAGAGGATGAGGAGGTGAGAGGTCGCATGGCCCCAGGCTGTCTCGGGATGG------GCATTGACTGCCAGAGCCGCCCCATCCCC----ATCACCTGAGCTGCCCTGTATGGTAGGGCACAGCGA--GCCTCCTTGGCCCGAGCTGTG-CCCCTCCCAC-CCCCAGG-CCCCGGCTGGCCCTCTCTCAGGTGC--------TCCCAGGATATGCCTGTCAGGCGGGGGTGTGGTCAGACTGGAGGCT-------GGA-CCGG-GGC-----------------------CAC---------------------------------------------GAGCCTGGCT--------------------------GTGGTTGTTCTCTCTGCCCCCAGGATGACCTGAAGATCACCCACCATGCAGACAATACTCTGCGGAGCTTCTGCAAGTGGCAGAAGAGCATCAACATGAAGGGGGACGCCCACCCACTGCACCATGACACCGCCATCCTGCTCACCAGGTGTCACCAGCC-------GCGGG----GGTGCAGGGCCC---------AGGGGGTGT-------------
i canFam3.chr3              I 2 C 0
s dasNov3.JH579681             823344 613 +   1727078 TCTGTAGCC-AGGATGACATCCCGA------AA---CCTCATCTCTCGG-CAGGTGGCCGGCCTGTTTCATGACCCAAACATCGGGAACCCCATCCACATCACCATCGTGCGCCTGATTTTGCTGGAAGATGAGGAGGTGAGAGGTCCCGTAACCCCACACTGTCCACCTGA-GAGGTGAGCATCAGCTGTCAGAGCC-CTCCTGCTCT----GCTGCCTGAGCTGCCTT----AGAAGGGCATAGCAGCAGCTT-CTTGGTCTGGGCTAGGTCACCAGTCAC-CCCCTAGTCCCTGGT--------------GTC--------------------------CAGGAGGA---GGGGTCAGGCTGGATGTTGCCCACAGGT-CTGACTGCCTGTGCTCCCGC-----------TGCTGCCTTG--GGGTCTCTGTCTCCCACCTTTGGATCAAGGGGAATTGGACCTT-TCCTCTTGGAACT-GG-GGGAGGCATGAGCAGCCACTCTCTCTGCCCCCAGGAGGACCTCAAGATCACACATCATGCAGACAACACCCTGAGGAGCTTCTGCAAGTGGCAGAAAAGCATCAACATGAAGGGGGACGCCCACCCCCTGCACCACGACGCTGCCATCCTGCTCACCAGGTGCTGCTGGCTGGCGG--GGATG----AGGGTGGGAGC---------AGAGAGTCTCTGTCTGAG-----
i dasNov3.JH579681          C 0 C 0

a score=1112834.000000
s hg38.chr15_KI270850v1_alt     14955 124 +    430880 GGAAGAAGCCCTGGTGGAGGAGGGGGCCGT--GCTGTCAGGGAGCCCCATTTTGAGGAGAGTTTGCGC--ACCTTTGGCCCAAGGCTGGATTCTGTCCGCACTTAGGGAGG---Tctt-tttattttgaaat-------
s panTro5.chr15              23343961 124 -  83230942 GGAAGAAGCCCTGGTGGAGGAGGGGGCCGT--GCTGTCAGGGAGCCCAGTTTTGAGGAGAGTTTGCGC--ACCTTTGGCCCAAGGCTGGATTCTGTCCGCACTTGGGGAGG---Tctt-tttattttgaaat-------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23041045 124 -  99763055 GGAAGAAGCCCTGGTGGAGGAGGGGGCCGT--GCTGTCAGGGAGCCCAATTTTGAGGAGAGTTTGCGC--ACCTTTGGCCCAAGGCTGGATTCTGTCCGCACTTGGGGAGG---Tctt-tttattttgaaat-------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2530835 124 +   2806052 GGAAGAAGCCCTGGTGGAGGAGGGGGCCGT--GCTGTCAGGGAGCCCCATTTTGAGGAGAGTTTGCGC--ACCTTTGGCCCAAGGCTGGATTCTGTCCGCACTTGGGGAGG---Tctt-tttattttgaaat-------
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22702245 122 - 121039945 GGAAGAAGCCCTGGTGGAGGAGGGGGCCGT--GCTGTCAGGGAGCCCCA--TTGAGGAGAGTTTGCTC--ACCTTTGGCCCAAGGCTGGATTCTGTCCGCACTTGGGGAGG---Tctt-tttattttgaaat-------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113298159 124 - 169600520 AGGAGAAGCCCTGGTGGACGAGGGGGCCGT--GCTCTCAGGGATCCCCATTTTTAGGAGAGTTTCCGC--ACCTTTGGCCCAAGGCTGGATTCTGTCTGCACTTGGGGAGG---Tctt-tttattttgaaat-------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61586607 124 + 171882078 GGGAGAAGCCCTGGTGGAGGAGGGGGCCGT--GCTCTCAGGGAGCCCCATTTTGAGGAGAGTTTGCAC--ACCTTTGGCCCAAGGCTGGATTCTGTCTGCACTCGGGGACG---TCAt-tttattttgaaat-------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3891295 124 +   4820037 AGGAGAAGCCCTGGTGGACGAGGGGGCCGT--GCTCTCAGGGATCCCCATTTTTAGGAGAGTTTCCGC--ACCTTTGGCCCAAGGCTGGATTCTGTCTGCACTTGGGGAGG---Tctt-tttattttgaaat-------
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9758095 124 +  10730278 AGGAGAAGCCCTGGTGGAGGAGGGGGCCGT--GCTCTCAGGGATCCCCATTTTTAGGAGAGTTTCCGC--ACCTTTGGCCCAAGGCTGGATTCTGTCTGCACTTGGGGAGG---Tctt-tttattttgaaat-------
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1314666 124 +  24206276 GGGAGAAGCCCTGGTGGAGGAGGGGGCCAT--GCTCTCAGGGAGCCCCATTTTGAGGAGAGTTTGCGC--ACCTTTGGCCCAAGGCTGGATTCTGTCTGCACTCGGGGATG---TCAt-tttattttgaaat-------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3881507 124 +   4030761 AGGAGAAGCCCTGGTGGAGGAGGGGGCCGT--GCTCTCAGGGATCCCCATTTTTAGGAGAGTTTCCGC--ACCTTTGGCCCAAGGCTGGATTCTGTCTGCACTTGGGGAGG---Tctt-tttattttgaaat-------
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4005415 124 +   5013933 GGGAGAAGCCCTGGTGGAGGAGGGGGCCGT--GCTCTCAGGGATCCCCATTTTTAGGAGAGTTTCCAC--ACCTTTGGCCCAAGGCTGGATTCTGTCTGCACTTGGGGAGG---Tctt-tttattttgaaat-------
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113731977  90 - 132174527 GGGAGAAGCCCTCGTGG------------------------------------GACGAGAGTCTGCAT--ACTTTTGGCCCAACGCTGGATTCTGTCAGCACTTTGGGAGG---Tctt-tttattctgaaat-------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              59755  90 -    125141 AGGAGAAGCCGTGGTGG------------------------------------GACGGGAGTCTGCAC--ACCTTTGGCCCACGGCTGGATTCTGTCAGCACGCGGGGAGG---Tctt-tttattctgaaat-------
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        73043  90 +  11725426 GGGAGAAGCCGTGGTGG------------------------------------GATGGGAGTCTGCAC--ACTTTTGGCCCAACGCTGAGTTCTGTCAGCACTTGGGGAGG---Tctt-tttattctgaaat-------
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       667974  90 +    730879 GGGAGAAGCCGTAGTGG------------------------------------GACGGGTGTCTGCAC--ACTTTTGGCCCAAGGCTGGATTCTGTCAGCACTTGGGGAGG---Tctt-tttattcagaaat-------
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5766957 128 -  36342412 GGTAGAAGCGCAGGTTGGGGGACACAGCCT--GTTCTCGGGGAGACCCATTGTGAAGAGAATTTGCAT--AGCTTTGTTACGAGGCTGGATTCCACAATCCTTTGGAGGGGGGTTCTTGtttattttgaaat-------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58197073 112 +  91889043 ----GGGGCCCAGGCCGGAGTGGGAGCAGCCGGCCCCCGAGGCGCTGTGT---GGGGGCAGTTTAC-T--GGCTTTGGCTGGAGACTGGATTCC-TCAGCACTCGGGGAGA---TCTT-GTT-----GAAAT-------
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             823957 128 +   1727078 -------GTGCAGTTTGGGGAGGGAGAGGCCTGCTCTCAGGGAGCCCCATTTTGAGGAGAGTTTGGGCCTACCTTTGGGCCAAGGCCGGAGTCCATCAACACTTGGGGAGG---ACTt-ttttattttaactctttaat
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90178309   0 + 124595110 C

a score=1978161.000000
s hg38.chr15_KI270850v1_alt     15079 225 +    430880 aa--------ttgtggattctcacactcttgtcaaaaataatagaga--gagggcctgtatagccttcatccatttcc--------------------------------------------------------cccggtg----gtaacatcttgcatgac----tacagcacagtatcccaatcaggaaactgacactgataccatccacaga-cttactcaggtctcatcggttccacatgtacttccc------------tgtgtgtgtgtgtgtgtgtgtgtgt-------gtgtg------tgtgt------attcagttctgtg
s panTro5.chr15              23344085 207 -  83230942 aa--------ttgtggattttcatgctgttatcagaaataatagaga--gagggcctgtgtagccttcatccatttcc--------------------------------------------------------cccagtg----gtaacatcttgcatgac----tagagcacagtatcccaatcaggaaactgacactgataccatccacaga-cttactcagatctcatcagttccacatgtacttccc------------------------------tttgtgt-------gtgtg------tgtgt------attcagttctttg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23041169 209 -  99763055 aa--------ttgtggattttcatgctgttatcagaaataatagaga--gagggcctgtatagccttcatccatttcc--------------------------------------------------------cccagtg----gtaacatcttgcatgac----tagagcacagtatcccaatcaggaaactgacactgataccatccacaga-cttactcagatctcatcagttccacatgtacttccc----------------------------tttgtgtgt-------gtgtg------tgtgt------attcagttctttg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2530959 231 +   2806052 aa--------ttgtggattcttacactgttgtcaaaaataatagaga--gagggcctgtatagccttcatccatttcc--------------------------------------------------------cccggtg----gtaacatcttgcatgac----tacagcacagtatcccaatcaggaaactgacactgataccatccacaga-cttactcaggtctcatcggttccacatgtacttccg------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt-------gtgtg------tgtgt------attcagttctgtg
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22702367 237 - 121039945 aa--------ttgtagattttcatgctattgtcagaaataacagaga--gagggcctgtatggctttcatccttttcc--------------------------------------------------------cccagtg----gtaacatcttgcatgat----tagagcacagtatcccaaccaggaaactgacactgataccatccacaga-cttactcagatctcatcagttccacacgtacttccctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt-------gtgtg------tgtgt------attcagttctttg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113298283 213 - 169600520 aa--------ttgtggattttcatgctgttgtcaaaaataatagaga--gagggcctctatagccttcatccatctct--------------------------------------------------------ctcagtggtaagtaacatcttgcatgac----tagagcacagtatcccaaccaggaaactgacactgataccatccgcaga-cttcctcagatatcattagttccacacgtactgccc----------------------------tttgtgtga-------atgtg------tatgt------attcagttctgtg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61586731 209 + 171882078 aa--------ttgtggatcttcatgctgttgttagaaataatagaga--gagggcatgtatagccttcatccatctcc--------------------------------------------------------cccagtg----gtaacatcttgcatgac----tagagcacagtatcccaaccaggaaactgacactgataccatccacaga-cttcctcagatatcattagttccacacgtactgccc----------------------------tttgtgtga-------atgtg------tgtgt------attcagttctgtg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3891419 213 +   4820037 aa--------ttgtggattttcatgctgttgtcaaaaataatagaga--gagggcctctatagccttcatccatctct--------------------------------------------------------cccagtggtaagtaacatcttgcatgac----tagagcacagtatcccaaccaggaaactgacactgataccatccgcaga-cttcctcagatatcattagttccacacgtactgccc----------------------------tttgtgtga-------atgtg------tatgt------attcagttctgtg
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9758219 213 +  10730278 aa--------ttgtggattttcatgctgttgtcaaaaataatagaga--gagggcctctatagccttcatccatctcc--------------------------------------------------------cccagtggtaagtaacatcttgcatgac----tagagcacagtatcccaaccaggaaactgacactgataccatccgcaga-cttcctcagatatcattagttccacacgtactgccc----------------------------tttgtgtga-------atgtg------tgtgt------attcagttctgtg
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1314790 209 +  24206276 aa--------ttgtggatcttcatgctgttgttagaaataatagaga--gagggcatgtatagccctcatccatctcc--------------------------------------------------------cccagtg----gtaacatcttgcatgac----tagagcacagtatcccaaccaggaaactgacactgataccatccacaga-cttcctcagatatcattagttccacacgtactgccc----------------------------tttgtgtga-------atgtg------tgtgt------attcagttctgtg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3881631 213 +   4030761 aa--------ttgtggattttcatgctgttgtcaaaaataatagaga--gagggcctctatagccttcatccatctcc--------------------------------------------------------cccagtggtaagtaacatcttgcatgac----tagagcacagtatcccaaccaggaaactgacactgataccatccgcaga-cttcctcagatatcattagttccacacgtactgccc----------------------------tttgtgtga-------atgtg------tgtgt------attcagttctgtg
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4005539 209 +   5013933 aa--------ttgtggattttcatgctgttgtcaaaaataatagaga--gagggcctctatagccttcatccatttcc--------------------------------------------------------cccagtg----gtaacatcttgcatgac----aagagcacagtatcccaaccaggaaactgacactgataccatccacaga-tttcctcagatatcatcagttccacacgtactgccc----------------------------tctgtgtga-------atgtg------tgtgt------attcagttctgtg
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113732067 215 - 132174527 aa--------ttgtggattcttgtgctgttgtcagaaatgatatggacagtgggcctgtatggcctccacgcat-tcc--------------------------------------------------------ccctgcg----gtaacagttttcatgac----tagaatacaggatcccagccaggaaactgacactgatg-catacacaga-cttactcagactttgtcagttccacacacacttccc----------------------------tttgtgtgt-------acatgtgtgtttgtgt------attcagttctatg
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              59845 216 -    125141 aa--------ttgtggattctcgtgctgttgtcggaaatgatacagacagagggcctgtatggcctgcacccat-tcc--------------------------------------------------------ccctgcg----gtaacagcttgcatgac----tagaatacaggatcccagccaggaaactgactctgatgccatccacaga-cgtcatcagacctcgtcagttccacacacgcttccc----------------------------tttgtgtgt-------atgtgtgtgtttgtgt------attcagttctaag
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        73133 270 +  11725426 aa--------ttgtggattctcgtgctgttgtcagaaatgatacagacggagggcctgtagggtctccacccat-tccccctgcggtaacagaaatgatacaaacggaggacctgtagggcctccacccattcgccctgcg----gtaacagcttgcatgac----tagaatacaggatcccagccaggaaaggga--ctggtgccatccacaga-cttaatcagatctcatcagttccacacacactttcc----------------------------tttgtgtgt-------atgtgtgtgtttgtgt------attcagttctatg
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       668064 215 +    730879 aa--------ttgtggattctcgtgctgttgtccgaaatgatacagacagagggcctgtatggcctccacccat-tcc--------------------------------------------------------ccctgcg----gtaacagcttgcctgac----tagaatacaggatcccagccgggaaactgacactgatgccatccacaga-cttactcagacctcgtcagttccacacacacttccc----------------------------tttgtgtgt-------acgtgtgtgtttgtgt------attcag-tctatg
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5767085 214 -  36342412 aatgaaatatttgtggattctcacaaagttgtcagaaatagcacaga----ggccccacgtgcccttgctccatttct--------------------------------------------------------cccagta----gtgacatct-----------------cccagtatcctagccagtaacttggttttgattcaat-tgcaga-cttgctcagctctcacccgttctctgtgtgcgtgcg----------------------------tgcatgtgtgtactgcatgca------tgtgtgctcacattcagtttcgcg
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90178309 208 + 124595110 aa--------tagcgggctctcgtgctattgtcataagcaatgcaga-------accaccttgcagccacccag-gct--------------------------------------------------------ctccacg----gtcatgccttgtccagt----gatgtttggataactcaagcaggaagtggacagaggtgtaacccaaagg-tgtgttcagggctcactggttctgcgtgt-ctgtga---------------------gtgtatgtgtgtgtgc-------atgtg------tgtgt------atgtag-tatgtg
i mm10.chr9                 C 0 I 535
s canFam3.chr3               58197185 167 +  91889043 AG--------TCATGGATTCTCCTAGAACCCTCAGAAACCACAGGCA--------------CGCCTTCGCCCATCCTT--------------------------------------------------------CCCAGGG---------CTCGTGCTGGACATCATAGAGTGCAACACTCTGACCAGGGCACGGG-------------CACGGG-TTTCCCCGGGTTGGGTTTGTCCAGC---------------------------------------TGGGTTTGT-------GTATA------TGTGT-----------GCTTCATG
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             824085 198 +   1727078 aa--------ttgtggattcacatgtagctgtcagaaataacacaga--gaaatc--acatgctcttcacctatttct--------------------------------------------------------cccaggg----gtatcatcttgtataaa----catagtacaatatcacaaccaggaaac-gatacccatacaatccacaggccttattcagatgtcaccagttttacat-------------------------------------tatctgctt-------gtggg------tgtgt------gtttagttttgtg
i dasNov3.JH579681          C 0 C 0

a score=619155.000000
s hg38.chr15_KI270850v1_alt     15304 62 +    430880 ---cagtttcatcac---tgtgggttcacctacccacccccacagtctagatacagatctgtcccatc
s panTro5.chr15              23344292 62 -  83230942 ---cagtttcatcat---tgtgggttcacctacccacccccacagtctagatacagatctgtcccatc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23041378 62 -  99763055 ---cagtttcatcat---tgtggattcacctacccacccccacagtctagatacagatctgtcccatc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2531190 61 +   2806052 ---cagtttcatcac---tgtgggttcacctacccacccccacagtctagatacagatctgt-ccatc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22702604 62 - 121039945 ---cagtttcatcac---tgtgggttcacctacccacccccacagtctagatacagatctgtcccatc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113298496 62 - 169600520 ---cagtttcatcac---tgtgggttcacctacccacccccacagtctagatacagatctgtctcatc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61586940 62 + 171882078 ---cagtttcatcac---tgtgggttcacctacccacccccacagtctagatacagatctgtctcatc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3891632 62 +   4820037 ---cagtttcatcac---tgtgggttcacctacccacccccacagtctagatacagatctgtctcatc
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9758432 62 +  10730278 ---cagtttcatcac---tgtgggttcacctacccacccccacagtctagatacagatctgtctcatc
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1314999 62 +  24206276 ---cagtttcatcat---tgtgggttcacctacccacccccacagtctagatacagatctgtctcatc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3881844 62 +   4030761 ---cagtttcatcac---tgtgggttcacctacccacccccacagtctagatacagatctgtctcatc
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4005748 62 +   5013933 ---tagtttcatcac---tgtgggttcacctacccacccccacagtctacatacagatctgtctcatc
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113732282 56 - 132174527 ---cggtgtcatccc--ttgtgggttcacctaccca-ccgcata------gtacagatctgtcccttg
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              60061 63 -    125141 ---cggggtcatccc--gtgtgggttcacctacccacccgcacagtctgggtacagatctgtcccttg
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        73403 62 +  11725426 ---cgttgtcatccc--ttgtgggttcacttaccca-ctgcacagtcaaggtacagatccgtcccttg
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       668279 63 +    730879 ---cggtgtcatccc--ttgggggttcacccacccacctgcacagtctaggtacagatctgtcccTTG
i aotNan1.NW_018503093v1    C 0 I 142
s otoGar3.GL873530            5767299 63 -  36342412 ---cagttttatccc--ttgtatagtcaaacatttaccctcgcagtctggatacggagcaggtctgta
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58197352 64 +  91889043 ---CACGTTTGTCACACGTGTGAGTCCCGGCATCTA-CCCTGCGGGCTGGATCCAGGGCAGGCCCATT
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             824283 65 +   1727078 caccattatcatggg---tgtaggttcacatatctaccttcactgtcaagatacagaacagttccatc
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90178517 535 + 124595110 I

a score=782369.000000
s hg38.chr15_KI270850v1_alt     15366 81 +    430880 agaaggatgtctcgtgctacccgtttatagtcacagccaccttcct-----------ccc---tcctcccctaacctccggcaactgctgatctg
s panTro5.chr15              23344354 74 -  83230942 agaaggatgtctcgtgctacccgtttatagtcacagccacct---------------------tcctcccctaacctccggcaactgctgatctg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23041440 74 -  99763055 agaaggatgtctcgtgctacccgtttatagtcacagccacct---------------------tcctcccctaacctccggcaactgctgatctg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2531251 81 +   2806052 agaaggatgtctcgtgctacccgtttatagtcacagccaccttcct-----------ccc---tactgccctaacctccagcaactgctgatctg
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22702666 81 - 121039945 agcaggatgtctcgtgctacccatttatagtcacagccaccttcct-----------gcc---tcctcacctaacctccggcaactgctgatctg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113298558 81 - 169600520 agaaggatgtctcgtactaccagtttatagtcacagccaccttcct-----------ccc---tcctcccctaacctctggcaactgctgatcta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61587002 81 + 171882078 agaaggatgtcttgtactaccagtttatagtcacagccaccttctt-----------ctc---tcctcccctaacctctggcaactgctgatctg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3891694 81 +   4820037 agaaggatgtctcgtactaccagtttatagtcacagccaccttcct-----------ccc---tcttcccctaacctctggcaactgctgatcta
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9758494 81 +  10730278 agaaggatgtctcgtactaccagtttatagtcacagccaccttcct-----------ccc---tcctcccctaacctctggcaactgctgatcta
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1315061 78 +  24206276 agaaggatgtcttgtactaccagtttatagtcacagccacct---t-----------ctc---tcctcccctaacctctggcaactgctgatctg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3881906 81 +   4030761 agaaggatgtctcgtactaccagtttatagtcacagccaccttcct-----------ccc---tcctcccctaacctctggcaactgctgatcta
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4005810 81 +   5013933 agaaggatgtctcgtactaccagtttatagtcacagccaccttcct-----------gcc---tcctcccctaacctctggcaactgctgatctg
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113732338 75 - 132174527 agaaggatgtcttgtgccatgtgttcatagtcacaaccaccttcct-----------ccc---tcctcccGTAACTTGCA------GCCCATCTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              60124 81 -    125141 agaaggatgtcttgtgccacgtgttcatagtcacagccaccttccc-----------ccc---tcctcccGTACCTTCCAGCACCTGCTCATCTG
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        73465 77 +  11725426 agaaggatgtcttgtgccacatgtttatagtcacagccaccttccg------------cc---tcctcccgtaccttccagcacctacccat---
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       668484 81 +    730879 aGAAGGATGTCTTGTGCCACGTGTTCATGGTCACAGCCACCTTCCT-----------CCC---GCCTCCCGCACCTTCCAGCACCTGCCCGTGTG
i aotNan1.NW_018503093v1    I 142 C 0
s otoGar3.GL873530            5767362 75 -  36342412 agaagcacacctcatgctgcctg---agagtcacagccacctaacc--------acaccc---ctttttccccatctctGGCAACA------CTG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58197416 92 +  91889043 AGAAGGAGCTCTCAGGCTGCAGTCTCACAGCCAAAGCCGCCCTCCTCGGCCCCGGCCCCA---TCCTTGCCCCACCTTGGACAACTGCAGATCTG
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             824348 84 +   1727078 acaaggatctctcaggccacccttttatagccacagccaccattct-----------cccacacctcttcctaacctctggcagctactaatctg
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90178517 535 + 124595110 I

a score=323506.000000
s hg38.chr15_KI270850v1_alt     15447 29 +    430880 tccAGAGG----------------CAG--TTA-TTTTCCCTC-----------------------TGCTGG
s panTro5.chr15              23344428 29 -  83230942 tccAGAGG----------------CAG--TTA-TTTTCCCTC-----------------------TGCTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23041514 29 -  99763055 TCCAGAGG----------------CAG--TTA-TTTTCCCTC-----------------------TGCTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2531332 29 +   2806052 tccAGAGG----------------CAG--TTA-TTTTCCCTC-----------------------TGCTGG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22702747 29 - 121039945 tccAGAGG----------------CAG--TTA-TTTTCCCTC-----------------------TGCTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113298639 29 - 169600520 tccAGAGG----------------CAG--TTA-TTTTCCCTC-----------------------TGCTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61587083 29 + 171882078 tccAGAGG----------------CAG--TTA-TTTTCCCTC-----------------------TGCTGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3891775 29 +   4820037 tccAGAGG----------------CAG--TTA-TTTTCCCTC-----------------------TGCTGG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9758575 29 +  10730278 tccagaga----------------caa--tta-ttttccctc-----------------------tgctgg
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1315139 29 +  24206276 tccAGAGG----------------CAG--TTA-TTTTCCCTC-----------------------TGCTGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3881987 29 +   4030761 tccAGAGG----------------CAG--TTA-TTTTCCCTC-----------------------TGCTGG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4005891 29 +   5013933 tccAGAGG----------------CAG--TTA-TCTTCCCTC-----------------------TGCTGG
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113732413 30 - 132174527 TCCGGAGG----------------CTG--TTATTTTTCCCTT-----------------------TGCTGG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              60205 29 -    125141 TCCAGAGG----------------CTG--TTA-TTTTCCCGC-----------------------TGCTGG
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        73542 21 +  11725426 ------------------------ctg--tta-ttttccctc-----------------------tcctgg
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       668565 26 +    730879 TCTGGAGG----------------CCA------TCTTCCCTC-----------------------TGCTGG
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5767437 31 -  36342412 TTCACAGG----------------CAGAGTTA-CTGGCCCTC-----------------------TGCTGG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90179052 29 + 124595110 TCCACCTG----------------AAG--TTA-TCTTCCCTC-----------------------TACTGG
i mm10.chr9                 I 535 C 0
s canFam3.chr3               58197508 52 +  91889043 TTTGGAGG----------------TGG--TTT-Tttttctttaaagatgtatttatttattttagagctgg
i canFam3.chr3              C 0 I 126
s dasNov3.JH579681             824432 45 +   1727078 ttcAGATGTGGTATTTTAGAACTCCAG--TTA-TTTTCCCTC-----------------------TCCTGT
i dasNov3.JH579681          C 0 C 0

a score=4855313.000000
s hg38.chr15_KI270850v1_alt     15476 405 +    430880 ACTCTGGCAGCT-----------------------TCTGT-CAGTGCCCCTGCT-GGATAGTAACCAAAATTATTCTGTGCAGGTCTGTGTT-------CCTGAGGGCCAAAGAGATGCCCAGTGGCTTGTGTGTGAATGAGAATACCTCCTT-CCCAAGTGGCCACTGTGCTGG-CCTCATGTCACAGAATGGTGGGAAG-----GACATCCTTTTCACTTGGGATCAACTGGG--GGTGACCCTTCCCTGG----CCTTAACTCAGGTGGGCCTGGCACT-CGCTAGGTTAGCCTGAAGGCCGC--T--TCTCTGCCTGTGCAGGAAGGACCTGTGTGCAGCCATGAACTGGCCCTGTGAGACCCTGGGCTTGTCCCATGTGGTGGGCATGTGCCAGCTGCACCGTAGCTGCAACATCAAGGAGGACATGGGCCTGCCGCTGACCTTCACTGT
s panTro5.chr15              23344457 405 -  83230942 ACTCTGGAGGCA-----------------------TCTGT-CAGCACCCCTGCT-GGATAGTAACCAAAATTGTTCTGTGCGGGTCTGTGCT-------CTCAAGGGCCAAAGAGATGCCCAGAGGGTTGTGTGTAAATGAGAGCACCTGCTT-CCCAAGCGGCCACCGTGCTGG-CCTCATGTCACAGAACGGTGGGAGG-----GACATCCTTTTTGCTTGGGATCAATTCGG--GG-GACCCTTCCCTGG----CCTTAGCTCAGGTGGGCCTGGCACTGGGCCAGGTTAGCCTGAAGGCCGC--T--TCTTTGCCTGTGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGTGAGACCCTGGGACTGTCCCATGTGGCGGGCATGTGCCAGCCGCACCGCAGCTGCAGCATCAACGAGGACACGGGCCTGCCGCTGGCCTTCACTGT
i panTro5.chr15             C 0 I 10
s panPan2.chr15              23041543 406 -  99763055 ACTCTGGAGGCA-----------------------TCTGT-CAGCACCCCTGCT-GGATAGTAACCAAAATTGTTCTGTGCGGGTCTGTGCT-------CTCAAGGGCCAAAGAGATGCCCAGAGGGTTGTGTGTAAATGAGAGCACCTGCTT-CCCAAGCGGCCACCATGCTGG-CCTCATGTCACAGAACGGTGGGAGG-----GACATCCTTTTCGCTTGGGATCAATTCGG--GGGGACCCTTCCCTGG----CCTTAGCTCAGGTGGGCCTGGCACTGGGCCAGGTTAGCCTGAAGGCCGC--T--TCTTTGCCTGTGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGTGAGACCCTGGGACTGTCCCATGTGGCGGGCATGTGCCAGCCGCACCGCAGCTGCAGCATCAACGAGGACACGGGCCTGCCGCTGGCCTTCACTGT
i panPan2.chr15             C 0 I 10
s gorGor5.CYUI01000037v1      2531361 405 +   2806052 ACTCTGGCAGCT-----------------------TCTGT-CAGTGCCCCTGCT-GGATAGTAACCAAAATTATTCTGTGCAGGTCTGTGTT-------CCTGAGGGCCAAAGAGATGCCCAGTGGCTTGTGTGTGAATGAGAATACCTCCTT-CCCAAGTGGCCACTGTGCTGG-CCTCATGTCACAGAATGGTGGGAAG-----GACATCCTTTTCACTTGGGATCAACTGGA--GGTGACCCTTCCCTGG----CCTTAACTCAGGTGGGCCTGGCACT-GGCCAGGTTAGCCTGAAGGCCGC--T--TCTCTGCCTGTGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGTGAGACCCTGGGCTTGTCCCATGTGGTGGGCATGTGCCAGCCGCACCATAGCTGCAACATCAAGGAGGACATGGGCCTGCCGCTGACCTTCACTGT
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22702776 406 - 121039945 ACTCTGGCAGCG-----------------------TCTGT-CAGCACCCCTGCT-GGATAGTAACCAAAATTATTCTGTGCAGGTCTGTGCT-------CCCCAGGGCCAAAGAGATGCCCAGCGGGTTGTGTGTGAATGAGAGCATCTGCTT-CCCAAGCGGCCACTGTGCTGG-CCTCATGTCATAGAATGGTGGGAGG-----GACATCCTTTTCGCTTGGGATCAATTCGG--GGGGTCCCTTCCCTGG----CCTTAGCTCAGGTGGGCCTGGCACTGGGCCAGGTTAGCCTGAAGGCCGC--T--TCTTTGCCTGTGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGTGAGACCCTGGGCCTGTCCCACGTGGCGGGCATGTGCCAGCCGCACCGCAGCTGCAGCATCAACGAGGACACGGGCCTGCCGCTGGCCTTCACTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113298668 406 - 169600520 ACTCTGGCAGCT-----------------------TCTGT-CAGCACCCCTGCT-GGATAGTAAGCAAAATTGTTCTGTGCGGGTCTGTGCT-------CCCAAGGGCCAAAGAGATGCCCAGCGGATTGTGTGTGAATGAGAGCACCTGCTT-CCCACGTGGCCACTGTGCTGG-CCTCATGCCACAGAATGGTGGGAGG-----GACATCCTTTTCGCTTGGAATCAGTTCGG--GGGGACCCTTCCCTGG----CCTTCGCTCAGGTGGGCCTGGCACTGGGCCAGGTTAACCTGAAGGCCGC--T--TCTCTGCCTATGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGTGAGACCCTGGGCCTGTCCCACGTGGCGGGCATGTGCCAGCCACACCGCAGCTGCAGCATCAACGAGGACACAGGCCTGCCGCTGGCCTTCACTGT
i rheMac8.chr7              C 0 I 10
s macFas5.chr7               61587112 406 + 171882078 ACTCTGGCAGCT-----------------------TCTGT-CAGCACCCCTGCT-GGATGGTAACCAAAATTGTTCTGTGCGGGTCTGTGCT-------CCCAAGGGCCAAAGAGATGCCCAGTGGATTGTGTGTGAATGAGAGCACCTGCTT-CCCACGTGGCCACTGTGCTGG-CCTCATGCCACAGAACGGTGGGAGG-----GACATCCTTTCCGCTTGGAATCAGTTCGG--GGGGACCCTTCCCTGG----CCTTCGCTCAGGTGGGCCTAGCACTGGGCCAGGTTAACCTGAAGGCTGC--T--TCTCTGCCTATGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGTGAGACCCTGGGCCTGTCCCACGTGGCGGGCATATGCCTGCCGCACTGCAGCTGCAGCATCAACGAGGACACAGGCCTGCCACTGGGCTTCACTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3891804 407 +   4820037 ACTCTGGCAGCT-----------------------TCTGT-CAGCACCCCTGCT-GGATAGTAAGCAAAATTGTTCTGTGCGGGTCTGTGCT-------CCCAAGGGCCAAAGAGATGCCCAGCGGATTGTGTGTGAATGAGAGCACCTGCTT-CCCACGTGGCCACTGTGCTGGCCCTCATGCCACAGAACGGTGGGAGG-----GACATCCTTTTCGCTTGGAATCAGTTCGG--GGGGACCCTTCCCTGG----CCTTCGCTCAGGTGGGCCTGGCACTGGGCCAGGTTAACCTGAAGGCTGC--T--TCTCTGCCTATGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGTGAGACCCTGGGCCTGTCCCACGTGGCGGGCATGTGCCAGCCACACCGCAGCTGCAGCATCAACGAGGACACAGGCCTGCCGCTGGCCTTCACTGT
i macNem1.NW_012011533v1    C 0 I 10
s cerAty1.NW_011999477v1      9758604 406 +  10730278 aCTCTGGCAGCT-----------------------TCTGT-CAGCACCCCTGCT-GGATAGTAAGCAAAATTGTTCTGTGCGGGTCTGTGCT-------CCCAAGGGCCAAAGAGATGCCCAGCGGATTGTATGTGAATGAGAGCACCTGCTT-CCCACGTGGCCACTGTGCTGG-CCTCATGCCACAGAACAGTGGGAGG-----GACATCCTTTTCGCTTGGAATCAGTTCGG--GGGGACCCTTCCCTGG----CCTTCGCTCAGGTGGGCCTGGCACTGGGCCAGGTTAACCTGAAGGCCGC--T--TCTCTGCCTGTGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGTGAGACCCTGGGCCTCTCCCATGTGGCGGGCATGTGCCAGCCACACCGCAGCTGCAGCATCAACGAGGACACAGGCCTGCCGCTGGCCTTCACTGT
i cerAty1.NW_011999477v1    C 0 I 10
s chlSab2.chr29               1315168 401 +  24206276 ACTCTGGCAGCT-----------------------TCTGT-CAGCACCCCTGCT-GGATAGTAACCAAAATTGTTCTGTGCGGGTCTGTGCT-------CCCAAGGGCCAAAGAGATGCCTAGTGGATTGTGTGTGAATGAGAGCACCTGCTT-CCCACGTGGCCACTGTGCTGG-CCTCATGCCACAGAACGGTGGGAGG-----GACATCCTTTCCGCTTGGAATCAGTTCGG--G-----CCTTCCCTGG----CCTTCGCTCAGGTGGGCCTAGCACTGAGCCAGGTTAACCTGAAGGCCAC--T--TCTCTGCCTGTGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGTGAGACCCTGGGCCTGTCCCACGTGGCGGGCATATGCCTGCCGCACTGCAGCTGCAGCATCAACGAGGACACAGGCCTGCCACTGGGCTTCACTGT
i chlSab2.chr29             C 0 I 10
s manLeu1.NW_012102632v1      3882016 406 +   4030761 ACTCTGGCAGCT-----------------------TCTGT-CAGCACCCCTGCT-GGATAGTAAGCAAAATTGTTCTGTGCGGGTCTGTGCT-------CCCAAGGGCCAAAGAGATGCCCAGCGGATTGTGTGTGAATGAGAGCACCTGCTT-CCCATGTGGCCACTGTGCTGG-CCTCATGCCACAGAACGGTGGGAGG-----GACATCCTTTTCGCTTGGAATCAGTTCGG--GGGGACCCTTCCCTGG----CCTTCGCTCAGGTGGGCCTGGCACTGGGCCAGGTTAACCTGAAGGCCGC--T--TCTCTGCCTGTGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGTGAGACCCTGGGCCTCTCCCACGTGGCGGGCATGTGCCAGCCACACCGCAGCTGCAGCATCAACGAGGACACAGGCCTGCCGCTGGCCTTCACTGT
i manLeu1.NW_012102632v1    C 0 I 10
s colAng1.NW_012114844v1      4005920 406 +   5013933 ACTCTGGCAGCT-----------------------TCTGT-CAGCACCCCTGCT-GGATAGTAACCAAAATTGTTCTGTGCGGGTCTGTGCT-------CCCAAGGGCCAAAGAGATGCCCAGCGGATTGTGTGTGAATGAGAGCACCTGCTT-CCCACGTGGCCACTGTGCTGG-CCTCATGCCACGGAACGGTGGGAGG-----GACATCCTTTTCGCTTGGAATCAGTTCGG--GGGGACCCTTCCCTGG----CCTTCGCTCAGGTGGGCCTGGCACTGGGCCAGGTTAGCCTGAAGGCCGC--T--TCTCTGCCTGTGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGTGAGACCCTGGGCCTCTCCCACGTGGCGGGCATGTGCCAGCCGCACCGCAGCTGCAGCATCAACGAGGACACAGGCCTGCCGCTGGCCTTCACTGT
i colAng1.NW_012114844v1    C 0 I 10
s calJac3.chr10             113732443 406 - 132174527 ACTCTGGTAGCT-----------------------TCTGT-CCGCGCCCCTGCTGGGACAGTAACCAGAATTGTTCCGTGCGGTCCTGTGCT-------TTTGAGTCCCAAATAGATGTCCAGTGGGTGGTGTGTGAATGACAGCACCTGCTT-CCCGAACGGTCACTGTGCTGG-CCCGATGTCACAGAACAGTGGGAGG-----GACATCCTTTTCACTCGGGATCAGTGGGGGTGGTGACCCTTCCCTGG----CTTGAGCTCAGGTGGGCCTGGCACTGGACCAGGTTAGCCTGAAGGCCGC--T--TCTCTGCCTGTGCAGGAAGGACCTGTGTGCAGCCATGAACCAGCCGTGTGAGACCCTGGGCCTGTCCCACGTGTCGGGCATGTGCCAGCCGCACCGCAGCTGCAGCATCAACGAGGACACGGGTCTGCCGCTGGCCTTCAC---
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              60234 404 -    125141 ACTCCGGTAGCT-----------------------TCTGT-CAGCGTCCCTGCTGGGACAGTAACCAGAATTGCTCTGTGTGGTCCTGTGCT-------CCTGAGTCCCAAATAGATATCCAGTGGGTGGTGTGTGAACGATAGCACCTGCTT-CCTGAACAGTCACTGTGCTGG-CCCGATGTCACAGAACAGTGGGAGG-----GACATCCTTTTCTCTCGGGATCAGTGCGG--GGGGACCCTTCCGTGA----CCTGAGCTCAGGTGGGCCTGGCACTGGACCTGGTTAGCCTGACGGCTGT--T--TCTTTGCCTCTCCAGGAAGGATCTGTGCGCAGCCATGAACCAGCCGTGTGAGACCCTGGGCCTGTCCCACGTGGCGGGCATGTGCCAGCCGCACCGCAGCTGCAGCATCAACGAGGACACGGGCCTGCCGCTGGCCTTCAC---
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        73563 389 +  11725426 ac---------------------------------tctgt-caGCGCCCCTGCTGGGACAGTAGCCAGAATTGTTCCGTGCGGTCCTGTGTT-------CCCAAGTCTCAAATAGATGTCCAGCAGGTGGTGTGTGAACAACAGCACCTGCTT-CCCGAACGGTCACTGTGCTGG-CCCGATGTCACAGAACAGTGGGAGG-----GATATCCTTTTCGCTCAGGATCAGTTGGG--GGGGACCCTTCCCCG-----CCTGAGCTCAGGTGGGCCTGGCACTGGACCAGGTTAGCCTGAAGTCCGC--T--TCTCCG----TACAGGAAGGACCTGTGCGCAGCCATGAACCAGCCGTGTGAGACCCTGGGCCTGTCCCACGTGGCGGGCATGTGCCAGCCGCACCGCAGCTGCAGCATCAATGAGGACACGGGCCTGCCGCTGGCCTTCAC---
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       668591 402 +    730879 ACTGTGGTAGCT-----------------------TCTGT-CAGCG-CCCTGCTGGGACAGTAACCAGAATTGTTCTGTGCGGTCCTGTGCT-------CCCGAGTCCCAAATAGATGTCCAGCGGGTGGTGTGTGAACGACAGCACCTGCTT-CCCAAATGGTCACTGTGCTGG-CCCGATGTCACAGAACAGTGGGAGG-----GATATCTTTTTCGCTCGGGATCAGTGGG---GGGGACCCTTCCCCGG----CCTGAGCTCAGGTGGGCCTGGCACTGGACCAGGTTAGCCTGAAGGCCGC--T--TCTCTGCCTGTGCAGGAAGGACCTGTGTGCAGCCATGAACCAGCCGTGTGAGACCCTGGGCCTGTCCCACGTGGCGGGCATGTGCCAGCCGCACCGCAGCTGCAGCGTCAACGAGGACACGGGCCTGCCGCTGGCCTTCAC---
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5767468 387 -  36342412 -------------------------------------------GCACCCTCATCAGGACAGTGACCAGCATTGTTCTGTGCACAAGGCTTCT-------TCCCAGGCCCAAATGGA-GCCCAGTGTGCTGTGTGTGAATGAGGGCACCCACTTCCCCAGATGGCCACTGTGCCAG-CCTGACATCACAGAGTGTAGGACGA-----AGTATCCTTCTTACTGTGGGTCAGT------GGAGGCCCTTCCCTGG-TCTCCTCAGCTCCGATAGACCTGGAGCT-GGTCAGGGTAGACTAACGGCCACTTT--TCTCTACCTGTGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCTTGCGAGACTCTGGGCCTGTCCCACGTGGCAGGCATGTGCCAGCCGCACCGCAGCTGCAACATCAACGAGGACACAGGCCTGCCGCTGGCCTTCACTG-
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90179081 369 + 124595110 GCTGGGGCAGCT-----------------------A-------------------GAAGGGTACAAAAGATTGTCCTAGGCACGTAT-TCCT-------TCTGAGGTCCCAGTGAGTGCTGTGAAGGTTGTATGTGAACAAAGGCACCTACTT-TTCAAATGGCCA-TATGTGGG-TCTGATGTCAGAGTGAGG-AGAAAT-----GACACCCTAGCTGCCCGGTCTGGGGTGGC--CTGGCCTTCTCCCTGC----CCT-------------CTTGGCATTGGGCTGAGTCAGCCTG-TGACCAC--T--TCTTT--CTCTGCAGGAAGGATTTGTGTGCGTCCATGAACCAGCCATGTGAAACCCTGGGCCTGTCTCATGTGTCTGGCTTGTGCCACCCTCAGCTCAGCTGTAGCGTCAGTGAGGATACTGGCATGCCACTGGCCTTCACTG-
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58197686 398 +  91889043 actcagccagctgagctacccagggccccAAAGGCTCCGCGCAGCCCCCTCACTGGGGCAGTAACCACAACTGTGCT---CAGGTCTGTCCCCACCCCACCCCCGGCCCCAGCAGGTGTCC---------CATGTGCAGGAGGGCACC-GCCT-CCCAGGT-GCAGCTGTGCTAG-CAGTATGTC--TGGGTGGGAGGGGG-----GCTGCTGTCCTCA------------------TGCCCTCCTGCTCTGGGGCCTCTCTGCTCAGGTGGGCCTGGCGCTGGG----------CTGAGGGCTGC-----TCTCTGCCCACGCAGGAAGGACCTGTGTGCAGCCATGAACCGGCCCTGCGAGACCTTGGGCCTGTCCCACGTGGCGGGCATGTGCCAGCCACACCGCAGCTGTAACATCAACGAGGACACGGGCCTGCCCCTGGCCTTCACCG-
i canFam3.chr3              I 126 C 0
s dasNov3.JH579681             824477 367 +   1727078 TTTCCAGCAGCT-----------------------TGTGT-CAGCACTCATGCTGGGATAGTAATCA-AACTGCC-------------TGCT-------CCCCAGGCCCAA--AGATGACAGGTGGGTGGTGTGGAAATGAGGGCACTGGCTC-CGCAATTGGCTGC-ATGCTGG-CCGGGGCTCATGGAGCGGTGCGAGGTAGCAGCTTTCCCACTCCCTTGGGGTCAGC------AGGGGCCCTTCCCTGG----CCTC------------CTCAGCTCTGAGT--------------GCCCAC--TTCTCTCTGTGTGTACAGGAAGGACCTGTGTTCAAACAAGAACTGGCCCTGCGAGACCCTGGGTCTGTCCCACGTGGCAGGCATGTGCCAGCCGCACCTCAGCTGCAATATCAACGAGGACACAGGCCTGCCCCTGGCCTTCACCGT
i dasNov3.JH579681          C 0 C 0

a score=11547.000000
s hg38.chr15_KI270850v1_alt     15881 36 +    430880 GATGGCCCCTGCAAGCTCACTGGCCTCAAGAACAGT---
s gorGor5.CYUI01000037v1      2531766 36 +   2806052 GATGGCCCCTGCAAGCTCACTGGCCTCAAGAACAGT---
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22703182 10 - 121039945 -------------AGCCCACGAG----------------
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               61587518 10 + 171882078 -------------AGCCCACGAG----------------
i macFas5.chr7              C 0 C 0
s calJac3.chr10             113732849 13 - 132174527 ----------GGTGGCCCACGAG----------------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              60638 13 -    125141 ----------GGTGGCCCACGAG----------------
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        73952 13 +  11725426 ----------GGTGGCCCACGAG----------------
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       668993 13 +    730879 ----------GGTGGCCCACGAG----------------
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5767855 11 -  36342412 ------------TGGCCCACGAG----------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90179450 11 + 124595110 ------------TGGCCCACGAG----------------
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58198084 11 +  91889043 ------------TGGCCCACGAG----------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             824844 13 +   1727078 -------------GGCCCACGAG-------------CTC
i dasNov3.JH579681          C 0 C 0
e panPan2.chr15              23041949 10 -  99763055 I
e colAng1.NW_012114844v1      4006326 10 +   5013933 I
e manLeu1.NW_012102632v1      3882422 10 +   4030761 I
e chlSab2.chr29               1315569 10 +  24206276 I
e cerAty1.NW_011999477v1      9759010 10 +  10730278 I
e macNem1.NW_012011533v1      3892211 10 +   4820037 I
e rheMac8.chr7              113299074 10 - 169600520 I
e panTro5.chr15              23344862 10 -  83230942 I

a score=4761956.000000
s hg38.chr15_KI270850v1_alt     15917 404 +    430880 CTTGAGCACAGGTACCGTGCCTGCCCCTATTGCTACACTGAGAGTCGAGATTCACCCTCCCAGCCTGAGAGCACTGGGTATCCAGCCT-GT-GGGTCACAAAGTCCAGGGGAAAGGAAGCTCTC--TGGAGAAGAAGCCCCGACTG--TCTGGCCATGTGCTGCCCCTGCACTGTGCCCTCCCCA-CAACCAG----GCTTCCCTGTTAAACAGGAGAGAGTC-CTGCCTGGG-CATCTCTGGGACTGGCCTGGAGGGAGTCTTATTTAAAGGGGAGTTGTGATGGGCTGGAAAGTCATTGTAGGTCTTTGGCTGTCCCTCCCCATTGCCCTCAGTGC-TGTAT-TTTTTACTCTCGAtccct-----------g--tccctg--t----------tcctgtttgctctgtggcc-tgggccagtgc-c-tgccctctctgggcctc
s panTro5.chr15              23344872 407 -  83230942 CTCGGGCACAGGTACCGTGCCTGCCCCCATTGCTACACTGAGAGCCGAGCTTCACCCTCGCAGCCTGGGGGCACCGGGTATCCAGCCT-GT-GGGTCACAAAGTCCAGGGGAAAGGAAGCTCTC--TGGAAAAGGAGCCCCGACTG--TCTGGCCATGTGCTGCCCCTGCACTGTCCCCTCCCCA-CAACCAG-GCTGCTTCCCTGTAAAGCAGGAGAGAGGG-CTGCCTGGG-CATCTCTAGGACTGGCCTGGAGGGAGTCTTATTTAAAGGGGAGTTGTGATGGGCCGGAAAGTCATTGTAGGTCTTTGGCTGTCCCTCCCCATTGCCCTCAGTGC-TGTAT-TTTTTACTctcgatccct-----------g--tccctg--t----------tcctctttgctctgtggcc-tgggccagtgc-c-tgccctctctgggcctc
i panTro5.chr15             I 10 C 0
s panPan2.chr15              23041959 407 -  99763055 CTCGGGCACAGGTACCGTGCCTGCCCCCATTGCTACACTGAGAGCCGAGCTTCACCCTCGCAGCCTGGGGGCACCGGGTATCCAGCCT-GT-GGGTCACAAAGTCCAGGGGAAAGGAAGCTCTC--TGGAAAAGGAGCCCCGACTG--TCTGGCCATGTGCTGCCCCTGCACTGTCCCCTCCCCA-CAACCAG-GCTGCTTCCCTGTAAAGCAGGAGAGAGGG-CTGCCTGGG-CATCTCTAGGACTGGCCTGGAGGGAGTCTTATTTAAAGGGGAGTTGTGGTGGGCCGGAAAGTCATTGTAGGTCTTTGGCTGTCCCTCCCCATTGCCCTCAGTGC-TGTAT-TTTTTACTCTCGAtccct-----------g--tccctg--t----------tcctgtttgctctgtggcc-tgggccagtgc-c-tgccctctctgggcctc
i panPan2.chr15             I 10 C 0
s gorGor5.CYUI01000037v1      2531802 403 +   2806052 CTTGAGCACAGGTACCGTGCCTGCCCCCATTGCTACACTGAGAGTCGAGATTCACCCTCCCAGCCTGAGAGCACTGGGTATCCAGCCT-GT-GGGTCACAAAGTCCAGGGGAAAGGAAGCTCTC--TGGAGAAGAAGCCCCGACTG--TCTGGCCATGTGCTGCCCCTGCACTGTGCCCT-CCCA-CAACCAG----CCTTCCCTGTTAAACAGGAGAGAGTC-CTGCCTGGG-CATCTCTGGGGCTGGCCTGGAGGGAGTCTTATTTAAAGGGGAGTTGTGATGGGCCGGAAAGTCATTGTAGGTCTTTGGCTGTCCCTCCCCATTGCCCTCAGTGC-TGTAT-TTTTTACTCTCGATCCCT-----------G--TCCCTG--T----------TCCTGTttgctctgtggcc-tgggccagtgc-c-tgccctctctgggcctc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22703192 406 - 121039945 CTCGGGCACAGGTACTGTGCCTGCCCCCATTGCTACACTGAGAGCTGAGCTTCACCCTTGCAGCCTGGGGGCACCGGGTATCCAGCCT-GT-GGGTCACAAAGTCCAGGGGAAAGGAAGCTCTC--TGGAAAAGGAGCCCCGACTG--TCTGGCCATGTGCTGCCCCTGCACTGTCCCCTCCCCA--AACCAG-GCTGCTTCCCTGTAAAGCAGGAGAGAGGC-CTGCCTGGG-CATCTCTAGGACTGGCCTGGAGGGAGTCTTATTTAAAGGGGAGTTGTGATGGGCCAGAAAGTCATTGTAGGTCTTTGGCTGTCCCTCCCCAATGCCCTCAGTGC-TGTAT-TTTTTACTCTCGATCccc-----------g--tccctg--t----------tcctgtttgctctgtggcc-tgggccagtgc-c-tgccctctctgggcccc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113299084 405 - 169600520 CTCGGGCACAGGTACTGTGCCTGTCCCCATTGCTACACGGAGAGCTGAGCTTCACCCTCCCAGCCTGGGGGCACCGGGTATCCAGCCT-GT-GGGTCACAAAGTACAGGGGAAAGGAAGCTCTC--TGGAGAAGGAGCCCCGACTG----TGGCCATGTGCTGTCCCTGCACTGTCCCCTCCCCA-CAACCAG-GCTGCTTCCCTGTAAAGCAGGAGAGAGGC-CTGCCTGGG-CATCTCTGGGACTGGCCTGGAGGGAGTCTTATTTAAAGGGGAGTTGTGATGGGCCAGAAAGTCATCGTAGGTCTTTGGCTGTGCCTCCCCATTTCCCTCAGTGC-TGTAT-TTTTTACTCTCGAtccct-----------g--tccctg--t----------tcctgtttgctctgtggcc-tgggccagtgc-c-tgccctctctaggcctc
i rheMac8.chr7              I 10 C 0
s macFas5.chr7               61587528 405 + 171882078 CTCGGGCACAGGTACCATGCCTGCCCCCATTGCTACACGGAGAGCTGAGCTTCACCCTCCCAGCCTGGGGGCACCAGGTATCCAGCCT-GT-GGGTCACAAAGTACAGGGGAAAGGAAGCTCTC--TGGAGAAGGAGCCCCGACTG----TGGCCATGTGCTGTCCCTGCACTGTCCCCTCCCCA-CAACCAG-GCTGCTTCCCTGTAAAGCAGGAGAGAGGC-CTGCCTGGG-CATCTCTGGGACTGGCCTGGAGAGAGTCTTATTTAAAGGGGAGTTGTGATGGGCCAGAAAGTCATCGTAGGTCTTTGGCTGTGCCTCCCCATTTCCCTCAGTGC-TGTAT-TTTTTACTCTCGAtccct-----------g--tccctg--t----------tcctgtttgctctgtggcc-tgggccagtgc-c-tgccctctctaggcctc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3892221 405 +   4820037 CTCGGGCACAGGTACTGCGCCTGTCCCCATTGCTACACGGAGAGCTGAGCTTCACCCTCCCAGCCTGGGGGCACCGGGTATCCAGCCT-GT-GGGTCACAAAGTACAGGGGAAAGGAAGCTCTC--TGGAGAAGGAGCCCCGACTG----TGGCCATGTGCTGTCCCTGCACTGTCCCCTCCCCA-CAACCAG-GCTGCTTCCCTGTAAAGCAGGAGAGAGGC-CTGCCTGGG-CATCTCTGGGACTGGCCTGGAGGGAGTCTTATTTAAAGGGGAGTTGTGATGGGCCAGAAAGTCATCGTAGGTCTTTGGCTGTGCCTCCCCATTTCCCTCAGTGC-TGTAT-TTTTTACTCTCGAtccct-----------g--tccctg--t----------tcctgtttgctctgtggcc-tgggccagtgc-c-tgccctctctaggcctc
i macNem1.NW_012011533v1    I 10 C 0
s cerAty1.NW_011999477v1      9759020 405 +  10730278 CTCGGGCACAGGTACTGTGCCTGTCCCCATTGCTACACAGAGAGCTGAGCTTCACCCTCCCAGCCTGGGGGCACCGGGTATCCAGCCT-GT-GGGTCACAAAGTACAGGGGAAAGGAAGCTCTC--TGGAGAAGGAGCCCCGACTG----TGGCCATGTGCTGTCCCTGCACTGTCCCCTCCCCA-CAACCAG-GCTGCTTCCCTGTAAATCAGGAGAGAGGC-CTGCCTGGG-CATTTCTGGGACTGGCCTGGAGGGAGTCTTATTTAAAGGGGAGTTGTGATGGGCCAGAAAGTCATCGTAGGTCTTTGGCTGTGCCTCCCCATTTCCCTCAGTGC-TGTAT-TTTTTACTCTCGATCCCT-----------G--TCCCTG--T----------TCCTGTttgctctgtggcc-tgggccagtgc-c-tgccctctctaggcctc
i cerAty1.NW_011999477v1    I 10 C 0
s chlSab2.chr29               1315579 405 +  24206276 CTTGGGCACAGGTACCATGCCTGCCCCCATTGCTACACTGAGAGCTGAGCTTCACCCTCCCAGCCTGGGGGCACCGGGTATCCAGCCT-GT-GGGTCACAAAGTACAGGGGAAAGGAAGCTCTC--TGGAGAAGGAGCCCCGACTG----TGGCCATGTGCTGTCCCTGCAGTGTCCCCTCCCCA-CAACCAG-GCTGCTTCCCTGTAAAGCAGGAGAGAGGC-CTGCCTGGG-CATCTCTGGGACTGGCCTGGAGGGAGTCTTATCTAAAGAGGAGTTGTGATGGGCCAGAAAGTCATCGTAGGTCTTTGGCTGTGCCTCCCCATTTCCCTCAGTGC-TGTAT-TTTTTACTCTCGAtccct-----------g--tccctg--t----------tcctgtttgctctgtggcc-tgggccagtgc-c-tgccctctctaggcctc
i chlSab2.chr29             I 10 C 0
s manLeu1.NW_012102632v1      3882432 405 +   4030761 CTCGGGCACAGGTACTGTGCCTGTCCCCATTGCTACACGGAGAGCTGAGCTTCACCCTTCCAGCCTGGGGGCACCGGGTATCCAGCCT-GT-GGGTCACAAAGTACAGGGGAAAGGAAGCTCTC--TGGAGAAGGAGCCCCGACTG----TGGCCATGTGCTGTCCCTGCACTGTCCCCTCCCCA-CAACCAG-GCTGCTTCCCTGTAAAGCAGGAGAGAGGG-CTGCCTGGG-CATCTCTGGGACTGGCCTGGAGGGAGTCTTATTTAAAGGGGAGTTGTGATGGGCCAGAAAGTCATCGTTGGTCTTTGGCTGTGCCTCCCCATTTCCCTCAGTGC-TGTAT-TTTTTACTCTCGATCCCT-----------G--TCCCTG--T----------TCCTGTttgctctgtggcc-tgggccagtgc-c-tgccctctctaggcctc
i manLeu1.NW_012102632v1    I 10 C 0
s colAng1.NW_012114844v1      4006336 399 +   5013933 CTCGGGCACAGGTACTGTGCCTGCCCCCATTGCTACACTGAGAGCTGAGCTTCACCCTCCCAGCCTGGGGGCACCGGGTATCCAGCCT-GT-GGGTCACAAAGTACAGGGGAAAGGAAGCTCTC--TCGAGAAGGAGCCCCGACTG----TGGCCATGTGCTGTCCCTGCACTGTCCCCTCCCCA-CAACCAG-GCTGCATCCCTGTAAAGCAGGAGAGAGGC-CTGCCTGGG-CATCTCTGGGACTGGCCTGGAGGGAGTCTTATTTAAAGGGGAGTTGTGATGGGCCAGAAAGTCATCGTAGGTCTTTGGCTGTCCCTCCCCATTGCCCTCAGTGC-TGTAT-Tttttactctcga-------------------tccctg--t----------tcctgttggctctgtggcc-tgggccagtgc-c-tgccctctctgggcctc
i colAng1.NW_012114844v1    I 10 C 0
s calJac3.chr10             113732862 397 - 132174527 CTCGGGCACAGGTACCGTGCCCACTC---CTGCTACACTGAGAGCTGAGCCTCACCTTCCCAACCTGGGGGCACCGGGCAGCCAGCCT-GT-GGGTCACAGAGTCCGGGGGATAGGAAACACTC--TGGAGAAGGAGCCCAGC-------TGGCCACATGCTG-CCCTGCACTGTCCCCTCCCCA-CAACCAG-GCTGCTTCCCTGTTAAGCAGGAGAAAGGC-CCACCTAGG-CATCTCT-GGACTGGCCTGGTGGGAGTCTTATTTAAACCGGGGTTGTGATGGGCGGGCAGGTCATCGTAGGTCTTTGGCTGTCCCTCCCCATTGCCCTTAGGGC-TGTAT-TTTTTACTCACAATCccc-----------a--tccctg--c----------tcctgtttactatgtgggc-taggccagtgc-c-taccctctctgggcctg
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              60651 400 -    125141 CTCGGGCACAGGTACCGTGCCCGCTCCCGCTGCTACACTGAGAGCTGAGCCTCACCTTCCCAACCCAGGGGCACCGGGCAGCCAGCCT-GT-AGGGCACAGAGTCAGGGGGAAAGGAAACGCTG--TGGAGAAGGAGCCCAGC-------TGGCCACATGCTG-GCCTGTGCTGTCCCCTCCCCA-CAACCAG-GCTGCTTCCCTGTTAAGGAGGAGAGAGGC-CCACCTGGG-TGTCTCT-GGACTGGCCTGGAGGGCGTCTTATTTAAAGGGGGGTTGTGATGGGCGGGCAGGTCATTGTAGGTCTTTGGCTGTCCCTCCCTGTTGCCCTTAGTGC-TGTAT-TTTTCCCTCAtgatccct-----------g--tccctg--c----------tcctgtttgctctgtaggc-taggccagtgc-c-taccctctctgggcctc
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        73965 400 +  11725426 CTCGGGCACAGGTACTGTGCCTACTCCCACTGCTACACTGAGAGCTGAGCCTCACCTTCCCAACCCGGGGGCACCAGGCAGCCAGGCT-GT-GGGTCATGGGGTCCGGGGGATAGGAAACGCTC--TGGAGAAGGAGCCCAGC-------TGGCCACATGCTG-CCCTGCGCTGTCCTCTCCCCA-CAGCCAG-GCTGCTTCCCTGTTAAGCAGGAGAGAGGC-CCGCCTGGG-CATCTCT-GGACTTGCCTGGAGGGCGTCTTATTTACAGGGGGGTTGTGATGGGCAGGCAGGTCATCGTAGGTCTTTGGCTGTCCCTCCCCGTTGCCCTTAGTGC-TGTAT-TTTTCACTCGTGATCccc-----------g--tccctg--c----------tcctgtttgctctgtgggt-taggccagtgc-c-tgccctctctgggcctc
i cebCap1.NW_016107334v1    C 0 I 88
s aotNan1.NW_018503093v1       669006 400 +    730879 CTCGGGCACAGGTACCGTGCCCGCTTCCGCTGCTACTCTGAGAGCTGAGCCTCACCTTCCCAACCCGGGGGCACCGGGCAGCCAGCCT-GT-GGGTCACAGAGTCCAGGGGAAAGGAAATGCTC--TGGAGAAGGAGCCCAGC-------TGGCCACATGCTG-CCCCGCGCTGTCCCCTCCCCA-CAACCAG-GCTGCTTCCCTTTTAAGCAGGAGAGAGGC-CCGCCTGGG-CATCTCT-GGACTGGCCTGGATGGCGTCTTATTTAAAGGGGGGTTGTGATGGGCAGGCAGGTCATCGTAGGTCTTTGGCTGTCCCTCCCCGTCGCCCTTGGGGC-TGTAT-TTTTTACCCACGAtccct-----------g--ttcctg--c----------tcctgtttgctgtgtgggc-taggccagtgc-c-taccctctctgggcctc
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5767866 429 -  36342412 CTTGGGCACAGGTACTATGCCTGCCCTCACTGCCATGCCAAGAGCCTGGCTTCACCCTCCCCACCTGGGGGCACTGGGCAGCCAGCCC-GTGGGGTCACAAAATCCCAGGAAAGGAAA---CTC--TGGGGAAGGAGTTCCATCTTGATCTGGCCACACACTGCCCCTGCGCTCTCCCCA-CCCA-CAGCCAG-GCTGCTTCACTGTCAAGCAGGAGAGAGAC-CTGCCAGGG-CACCTCTGGGACTAGCCTAGAGTGAGCTCTGTGTG-AGGGGGGTTAGGATGGGACAGGAAGTCATTGTAGGTCCTTGGCTATCTCACCCCAGTGCCCTTAGCACTTGTAT-GTTTCACTCTTGGTCCCTATTCCatctcgg--tcccta--tttcatccctctcctgcttgctatgtgaccttgggccagttcac-tgccttctcttggcctc
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  90179461 388 + 124595110 CTAGGACACAGGTAACTCATCTTCCCTCACCTCTG-GTTAGGAACCTGACTTTACCTTTTCACTCTT-GGGCACCAGCCAGCAGGGCTCCT-GGGTCACGAAACCTGAGGGA-GTAAAACAGTT--TGGGGTTACAGTTC----------CAACCACAAAATGCCCCAGCATTGTCTCAGTTCCT-CAGCAAG-ACTGTTCCCCTAT-GAGTGGGAGAGAGGG-CTGCTGGGG-CATCACCGAGACCCATCTGTAGCATGTCATGT---GGGAGGAGTGGGGAT-GGCCAGTCAGT--GTGTGGAGCCTTGGCCACCTTTCTC----GCCCTAGGTGC-TGGCTCTTTTTCCTCCTGTCACTT-----------G--CTTCCA--T----------TCCTGCCTGCTCTGTGACC-CTGGCAAGTGT-CATGTCCTTTCTGGGCCTT
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58198095 373 +  91889043 CTTGGACACAGGTACTCCTCCCGCTGCCACAGCCGCTCTGGCATGCCAGCTTCACCTCTCCA-CTCGGGGGCAGCGGGCA---------GC-GGGC-----------AGAGGAAGGCAGCCCGC--C----------CCCCCACC-----TGGCCATGCGCTGTGCCTGCACTGTCCCCACCACA-CAGCCGG-GCTGC-TCTCTGTCCGGTGGGGGAGAGGC-CGGCCC-GG-TACCTCTGGGGCTGGCTCAGA----GTCTCATTTCTAGTGGCGTTGAGCTAGCCAGAGTCATCAGCACAGGGCATCAGCTGCCCCTGCACACTGTTCTC-GTGC-TTGCA-TGTTGACCCTTGGTCCCG-----------GCACACCTGAAT----------TCCCAACTGCTCTGTGACCCCAGCCCAGTGCTC-TGTCCTCTCTGGACCTC
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             824857 392 +   1727078 ---GGGCACAGGTACC------------------ACACCAAGAGCCCAGCTTCACCTTCCCAGCCTGGGGCTGCAGGGTAGCAGACCT-GA-GGGCCGCAAA-TCCCCAGGAAAGGAAACTGCCGGTGGGGTGGGAGCTCTGACTCAGCCAGGCCATGTGCTGTCCCGGCTTTGTCCCCACCCCAACAGCTGGGGCTGCTTCTCTAATAAACAGGAGAGAGATGCTGCCTGGGACACCTCTGGGCCCGGCCTGGAATGAGTCTTATTTGAAGAGGGTTTGAGATGGGCCAGAAAGTCACTGTAGGTCTTTAGCTGCCCCCCTCCCAAGCCCTCAGTGCTTACAT-Ttttgactcctgga---------------t--cccctt--t----------tcctgcttgctgtatgaccttgggcaagtgc-cttaccctctctgagcctc
i dasNov3.JH579681          C 0 C 0

a score=1043924.000000
s hg38.chr15_KI270850v1_alt     16321 104 +    430880 tgtgtgcttcccatagattgaggggtttggattc-agtgatgtccaaggctccctctatctgacaCCGCTGCCTAAGGC--TCCTGTCTTCA---------CAGGCCTCCAGCCAC
s panTro5.chr15              23345279 104 -  83230942 tgtgtgcttcccatagattgaggggtttggattc-agtgatgtccaaggctccttccatctgacactGCTGCCTGAGGC--TTCTGTCTTCA---------CAGGCCTCCAGCCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23042366 104 -  99763055 tgtgtgcttcccatagattgaggggtttggattt-agtgatgtccaaggctccctccatctgacactGCTGCCTGAGGC--TTCTGTCTTCA---------CAGGCCTCCAGCCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2532205 103 +   2806052 tgtgtgcttcccatagattgaggggtttggattc-agtgatgt-caaggctccctccatctgacaCCGCTGCCTAAGGC--TCCTGTCTTCA---------CAGGCCTCCAGCCAC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22703598 104 - 121039945 tgtgtgcttcccatagattgaggggtttggattc-agtgatgtccaagtctccctccatctgacactGCTGCCTGAGGC--TCCTGTCTTCA---------CGGGCCTCCAGCCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113299489 104 - 169600520 tgtgtgcttcccatagattgaggggtttggattc-agtgacgtccaaggctccctccatctgacaCCGCTGCCTGAGGC--TCCTGCCTTCA---------CAGGCCTCCAGCAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61587933 104 + 171882078 tgtgtgcttcccatagattgaggggtttggattc-agtgacgtccaaggctccctccatctgacaCCGCTGCCTGAGGC--TCCTGCCTTCA---------CAGGCCTCCAGCAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3892626 104 +   4820037 tgtgtgcttcccatagattgaggggtttggattc-agtgacgtccaaggctccctccatctgacaCCGCTGCCTGAGGC--TCCTGCCTTCA---------CAGGCCTCCAGCCAC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9759425 104 +  10730278 tgtgtgcttcccgtagattgaggggtttggattc-agtgacgtccaaggctccctccatctgacaCCGCTGCCTGAGGC--TCCTGCCTTCA---------CAGGCCTCCAGCCAC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1315984 104 +  24206276 tgtgtgcttcccatagattgaggggtttggattc-agtgacgtccaaggctccctccatctgacaCCGCTGCCTGAGGC--TCCTGCCTTCA---------CAGGCCTCCAGCAAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3882837 104 +   4030761 tgtgtgcttcccatagattgaggggtttggattc-agtgacgtccaaggctccctccatctgacaCCGCTGCCTGAGGC--TCCTGCCTTCA---------CAGGCCTCCAGCCAC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4006735 104 +   5013933 tgtgtgcttcccatagattgaggggtttggattc-agtgacgtccaaggctccctccatctgacaCCGCTGCCTGAGGC--TCCTGCCTTCA---------CAGGTCTCCAGCCAC
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113733259  99 - 132174527 tgtgagcttcccataga-tgagggggttggattc-agcgatgtccaagg-tccctCTGTCTG---CTgccgcctgaggc--tcctgtcttca---------catgcccccagccac
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              61051 102 -    125141 tgtgtgcttcccataga-tgagggggttggattc-agtgatgtccagtg-tccctCTGTCTGCCACCGCTGCCTGaggc--tcctgtcttca---------catgtccccagccac
i saiBol1.JH378378          C 0 C 0
s aotNan1.NW_018503093v1       669406 102 +    730879 tgcgtgcttcccataga-tgagggggttggattc-agtgatgtccaagg-tccctCTGTCTGCCACCACCGCCTGAGGC--TCCTGTCTTCA---------CATGTCCCCAGCCAC
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5768296 106 -  36342412 tgagtgcttcctatagattgagagggttggattc-agtcatgtccaaagctctctctgactGATACTGCTCCCTGGGGCCTTCACGTCTGAG---------CGTGGCTCCTGCCTC
i otoGar3.GL873530          I 1 I 6
s mm10.chr9                  90179849  74 + 124595110 TGTGGGCTCCATATAGACAGAGGAGGCTAGATAT-AGTGGTGC--------------------CACCTCTGCCT--GTC--CCCTGT-----------------GCCTTTTACCAC
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58198468  73 +  91889043 ----TGCTCCCCGGTGA-GCAGGGGCTTGGATTC-AGTGATGGCT--------------------------CCTGGGTC--TCCGTGTGGCC---------CATGCCCTCGGCTGG
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             825249 110 +   1727078 tgtgtgctccctgtagattaa---gttgagattcaagcggtgcccaagggtcctcccatctgacatCTCTGCCTGAGGC--TCCCATGTCCAAGCATGGCCCGTGTCCTCAGCCA-
i dasNov3.JH579681          C 0 C 0
e cebCap1.NW_016107334v1        74365  88 +  11725426 I

a score=1329556.000000
s hg38.chr15_KI270850v1_alt     16425 188 +    430880 CTGTGCCCTGGCTGTTGAGCTGGCGAATATGGCAGCATCTTAGATTGTCTAGAAAGCCATCA--AAGGCAGGCTCCCAGAGGGTTCTGTGGGTCAAAGCTG--TTGGGGTCATCCATTCAGATGTCCGGGTTTTGTGGGTGATGGCCGTGCCTGCAGGACCTTGAAGCTGCTTATGGCTGCAGAAAGAACAG
s panTro5.chr15              23345383 188 -  83230942 CTGTGCCCTGGCTGTTGAGCTGGCGAATATGGCAGCATCTTAGATTGTCTAGCAAGCCATCA--AAGGCAGGCTCCCAGAACGTTCTGTGGGTCAAAGCTG--TTGGGGTCATCCATTCAGACGTCCGGGTTTCGTAGGCGATGGCCGTGCCTGCAGGACCTTGAAGCTGCTTATGGCTGCAGAAAGAACAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23042470 188 -  99763055 CTGTGCCCTGGCTGTTGAGCTGGCGAATATGGCAGCATCTTAGATTGTCTAGCAAGCCATCA--AAGGCAGGCTCCCAGAACGTTCTGTGGGTCAAAGCTG--TTGGGGTCATCCATTCAGACGTCCGGGTTTCGTAGGCGATGGCCGTGCCTGCAGGACCTTGAAGCTGCTTATGGCTGCAGAAAGAACAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2532308 187 +   2806052 CTGTGCCCTGGCTGTTGAGCTGGCGAATATGGCAGCATCTTAGATTGTCTAGAAAGCCATCA--AAGGCAGGCTCCCAGAGGGTTCTGTGGGTCAAAGCTG--TTGGGGTCATCCATTCAGATGTCTGGGTTTTGTGGGTGATGGCCGTGCCTGTAGGACCTTGAAGCTGCTTATGGC-GCAGAAAGAACAG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22703702 188 - 121039945 CTGTGCCTGGGCTGTTGAGCTGGCAAATATGGCAGCATCTTAGATTGTCCAGCAAGCCATCA--AAGGCAGGCTCCCAGAGGGTTCTGTGGGTCAGAGCTA--TTGGGGTCATCCATTCAGACGTCCGGGTTTCGTGGGTGATGGCCGTGCCTGCAGGACCTTGAAGCTGCTTATGGCTGCAGAAAGAATAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113299593 187 - 169600520 CTGTGCCCGGGCTGTTGAGCTGGCGAATATGGCAGCATCTTAGATTGTCCAGCAAGCTTTCA--AAGGCAGGATCCCAGAGGGTTCTAT-CGTCAAAGCTG--TTGGGGCCATCCATTCAGATGTCCGGGTTTCGTGGGTGATGGCCGTGCCTGCAGGACCTTAAAGCTGCCTATGGCTGCAGAAAGAACAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61588037 187 + 171882078 CTGTGCTTGGGCTGTTGAGCTGGCGAATATGGCAGCATCTTAGATTGTCCAGCAAGCTTTCA--AAGGCAGGCTCCCAGAGGGTTCTGT-GGTCAAAGCTG--TTGGGGTCATCCATTCAGATATCCGGGTTTCCTGGGTGATGGCTGTGCCTGCAGGACCTTAAAGCTGCTTATGACTGCAGAAAGAACAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3892730 187 +   4820037 TTGTGCCCGGGCTGTTGAGCTGGCGAATATGGCAGCATCTTAGATTGTCCAGCAAGCTTTCA--AAGGCAGGATCCCAGAGGGTTCTAT-CGTCAAAGCTG--TTGGGGCCATCCATTCAGATGTCCGGGTTTCGTGGGTGATGGCCGTGCCTGCAGGACCTTAAAGCTGCCTATGGCTGCAGAAAGAACAG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9759529 187 +  10730278 TTGTGCCCGGGCTGTTGAGCTGGCGAATATGGCAGCATCTTAGATTGTCCAGCAAGCTTTCA--AAGGCAGGATCCCAGAGGGTTCTAT-CGTCAAAGCTG--TTGGGGCCATCCATTCAGATGTCCGGGTTTCGTGGGTGATGGCTGTGCCTGCAGGACCTTAAAGCTGCCTATGGCTGCAGAAAGAACAG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1316088 187 +  24206276 CTGTGCTTGGGCTGTTGAGCTGGCGAATATGGCAGCATCTTAGATTGTCCAGCAAGTTTTCA--AAGGCAGGCTCCCAGAGGGTTCTGT-GGTCAAAGCTG--TTGGGGTCATCCATTCAGATGTCTGGGTTTCCTGGGTGATGGCTGTGCCTGCAGGACCTTAAAGCTGCTTATGACTGCAGAAAGAACAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3882941 187 +   4030761 TTGTGCCCGGGCTGTTGAGCTGGCGAATATGGCAGCATCTTAGATTGTCCAGCAAGCTTTCA--AAGGCAGGATCCCAGAGGGTTCTAT-CGTCAAAGCTG--TTGGGGCCATCCATTCAGATGTCCGGGTTTCGTGGGTGATGGTTGTGCCTGCAGGACCTTAAAGCTGCCTATGGCTGCAGAAAGAACAG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4006839 177 +   5013933 CTGTGCCCGGGCTGTTGAGCTGGCGAATATGGCAGCATCTTAGATTGTCCAGCAAGCTTTCA--AAGGCAGGCTCCCAGAGGGTTCTGT-GGTCAAAGCTG--TTGGGGTCATCCATTCAGACATC---------TGGGTGATGGCTGTGCCTGCAGGGCCTTAAAGCTGCCTATGGCTGCAG-AAGAACAG
i colAng1.NW_012114844v1    C 0 C 0
s aotNan1.NW_018503093v1       669508 180 +    730879 CTGTGCCCGGGCTGTTGGGCTGGTGAATGTGGCAGCATCTTAGATTGTCCAGCAAGCCGACA--AGGGCAGGTTCCCAGAGGGTTCTGCGGGTCAAAGGCGTTTTGGGGTCATCCATTCAGACATCCGAGTTTTGTGAGTGGTGGCCGTGCCTG----------AAGCCGCTTATGGCAGCAGAAGGAACAC
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5768408 184 -  36342412 CTGTGCCCACCCTGTTTTTCTGGTGAATATGGCAGCATCTTACATTGTCCAGCAAGCTGACA--AAGGCAGGTTCTCAGAGAGCCT----GGTCAGAGGTG--TTGAGGTCATCCATTCAGATGTATGGGTTCCCTGGGTGATGGCCATTCCTGTGGGTTCCTGAAGTTGCTCATGGCAATAGAAGGATTCA
i otoGar3.GL873530          I 6 I 1
s mm10.chr9                  90179923 127 + 124595110 CTGTGCCGGGGTTGGCGAGCGGGTGAACA------------GGATTGT--ACCAAAGCTTCATTGAGCAAGGCTCCCAGAGAGCTCTGTGGGCCAGAGGGT--TTGGA--------------------------CTGGGTGACAGCCATGCCTG--------------TGTTGGTGACTCCAG---------
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58198541 113 +  91889043 CTATGCCCAGGCTGTTCAGACGGT--------CAGGAACCGATGCCGGTGCGC-------CA--CAGGCAGG------------TCTGC-TTTCAGGGGC---TTGGGCTCATGCA---------------------------GGC------------------AAGCCACC-GTGGTGGTGGAATGAGCAc
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             825359 163 +   1727078 CTGTGCCCCAGCAGGT-AGCAGGT------------------GGCTGTTTAGCTGGG---CA--AAGGCAGAC-ACCAGCGGGACCCGTGGGTCTAGG-TG--GTGGGGTCACCCTTCCAGCAGTTCTGGTTCCCTGGGTG-TGGTCCTACAGGCAGGGCCTTCAGGCTGCTCACAGCAGTGAAAAGAACAC
i dasNov3.JH579681          C 0 C 0
e calJac3.chr10             113733358   0 - 132174527 C
e cebCap1.NW_016107334v1        74365  88 +  11725426 I
e saiBol1.JH378378              61153   0 -    125141 C

a score=9149074.000000
s hg38.chr15_KI270850v1_alt     16613 779 +    430880 CCTGCCGCAGTActacaatttcctggctgtgttaccctggctagttccttagactctctgagccttcctgagggtaa------------taatgagaactgagtgagactgtgtttctg-aaagtgcttagcatggcccc-ggcacatagtagatgctcaggaaa-----taatttttctCATGTCCTTCCCAAGGATGGTCTCTGGAG-ACCTTTCTGTGATACAGCAG---CTCA---------GAT-GCCTTAACTCAAGTGCACAGCCTTGGGACAAGGACC---TGTGAGT---GGGAACCGCTGTCAGACTGTTCTTGAGGCCAGTGAGCTTGCAGGG------------GCCATC-ACGGGCCCACATCTGTGCCACCTGATTTGCCATTGCTGGCCAGTCCCCGG-GCTGGAGCAGGGCTGCTCTGGGTC-CCTGGCC---CTCA-TT-----TCAGGCtcagg----------ccggagtaggagcccttgggatactagctgtcataccctcattttacattaa-agaaac--tgaggctcagcga-gagaatgtgactttctcaa------ggc--tgtggccattgagtggcacaac--cagccctgggaactaggactATGCACCTTGTGGTTCTCCAGGGTA-GGGCAGGCTAGAAGCCTCCCGCCGGCTTACCCGCCCTTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGATGGAAGCAGCAATGACTGTGAACCCATT-GGAAACAGCCTTTCATCATGTTTCCACAGCTCCCGTACGAC---GCCGCTCCCCTCACCTGGTCCTGCTGCAGCTGCCAGTACATCACCAGGTTCCTTGAGTAAGTCC---
s panTro5.chr15              23345571 779 -  83230942 CCTGCCGCAGTActgcaatttcctggctgtgttaccctagctagttccttagactctctgagccttcctgagggtaa------------taatgagaactaagtgagattgtgtttctg-aaagtgcttagcatggcccctggcacatagtagatgctcaggaaa-----taatttttcttgtatCCTTCCCAAGGATGGTCTCTGGAG-ACCTTTCTGTGATACAGCAG---CTCA---------GAT-CCCTTAACTCAAGTGCACAGCCTTGGGACAAGGACC---TGTGAGT---GGGAACCGCTGTCAGACTGTTCTTGAGGCCAGTGAGCTTGCAGGG------------GCCATC-ACGGGCCCACATCTGTGCCACCTGATTTGCCATTGCTGGCTGGCCCCCAG-GCAGGGGCAGGGCTGCTCTGGGTC-CCTGGCC---CTCa-tt-----tcaggct----------------ggaacaggagcccttgggatactagctgtcataccctcattttaccttca-ggaaac--taaggctcagagaggggaatgtgactttctgcagccattggg--tgtggccattgggtggcagaac--cagccctgggaactaggactGTGCACCTTGTGGGTGTCCAGGGGA-GGGCAGGCTGGCAGCCTCCCGCCGGCTCACCCGCCCCTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGTGAGCCCGTTGGGAAACGACCTTTCATCATGTCTCCACAGCTCCTGTACGAC---GCCGCTCCCCTCACCTGGTCCCGCTGCAGCCGCCAGTATATCACCAGGTTCCTTGAGTAAG------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23042658 779 -  99763055 CCTGCCGCAGTActgcaatttcctggctgtgttaccctggctagttccttagactctctgagccttcctgagggtaa------------taatgagaactaagtgagattgtgtttctg-aaagtgcttagcatggcccctggcacatagtagatgctcaggaaa-----taatttttcttgtatCCTTCCCAAGGATGGTCTCTGGAG-ACCTTTCTGTGATACAGCAG---CTCA---------GAT-CCCTTAACTCAAGTGCACAGCCTTGGGACAAGGACC---TGTGAGT---GGGAACCGCTGTCAGACTGTTCTTGAGGCCAGTGAGCTTGCAGGG------------GCCATC-ACGGGCCCACATCTGTGCCACCTGATTTGCCATTGCTGGCTGGCCCCCAG-GCAGGGGCAGGGCTGCTCTGGGTC-CCTGGCC---CTCa-tt-----tcaggct----------------ggaacaggagcccttgggatactagctgtcataccctcattttacattca-ggaaac--tgaggctcagagaggggaatgtgactttctgcagccattggg--tgcggccattgggtggcagaac--cagccctgggaactaggactGTGCACCTTGTGGGTGTCCAGGGGA-GGGCAGGCTGGCAGCCTCCCGCCGGCTCACCCGCCCCTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGTGAGCCCGTTGGGAAACGACCTTTCATCATGTCTCCACAGCTCCTGTACGAC---GCCGCTCCCCTCACCTGGTCCCGCTGCAGCCGCCAGTATATCACCAGGTTCCTTGAGTAAG------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2532495 779 +   2806052 CCTGCTGCAGTActacaatttcctggctgtgttaccctggctagttccttagactctctgagccttcctgagggtaa------------taatgagaactgagtgagactgtgtttctg-aaagtgcttagcatggcccc-ggcacatagtagatgctcaggaaa-----taatTTTTCTCATGTCCTTCCCAAGGATGGTCTCTGGAG-ACCTTTCTGTGATACAGCAG---CTCA---------GAT-GCCTTAACTCAAGTGCACAGCCTTGGGACAAGGACC---TGTGAGT---GGGAACCGCTGTCAGACTGTTCTTGAGGCCAGTGAGCTTGCAGGG------------GCCATC-ACGGGCCCACATCTGTGCCACCTGATTTACCATTGCTGGCCAGTCCCCGG-GCTGGAGCAGGGCTGCTCTGGGTC-CCTGGCC---CTCA-TT-----TCAGGCtcagg----------ccggagtaggagcccttgggatactagctgtcataccctcattttacattaa-agaaac--tgaggctcagcga-gagaatgtgactttctcaa------ggc--tgtggccattgagtggcacaac--cagccctgggaactaggactATGCACCTTGTGGTTCTCCAGGGTA-GGGCAGGCTAGAAGCCTCCCGCCGGCTTACCCGCCCTTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGATGGAAGCAGCAATGACTGTGAGCCCATT-GGAAACAGCCTTTCATCATGTTTCCACAGCTCCCGTACGAC---GCCGCTCCCCTCACCTGGTCCCGCTGCAGCTGCCAGTACATCACCAGGTTCCTTGAGTAAGTCC---
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22703890 780 - 121039945 CCTGCCACAGTActgcaatttcctggctgtgttactctggctagttccttagactctctgagcctccctgtgggtaa------------taatgagaactgagtgagattgtgtttctgaaaagtgcttagcatggcccctggcacatagcagatgctcaggaaa-----taatTTTTCTCATGTCCTTCCCAAGGATGGTCTCTGGAG-ACCTTTCTGTGATACAGCAG---CTCA---------GAT-CCCTTAACTCAAGTGCACAGCCCTGGGACAAGGACC---TGTGAGT---GGGAACCGCTGTCAAACTATTCTTGAGGCCAGTGAGCTTGCAGGG------------GCCATC-ACGGGCCCACATCTGTGCCACCTGATTTGCCATTGCTGGCCGGCCCCCAG-GCAGGGGCAAGGCTGCTCTGGTTC-CCTGGCC---CTCa-tt-----tcaggct----------------ggagcaggagcccttgggatactagctgtcataccctcattttacattca-ggaaac--tgaggctcagagaggggaatgtgactttctgcggccattggg--tgtagccattgggtggcagaac--cagccctgggaactaggactGTGCACCTCGTGGGTGTCCAGGGGA-GGGCAGGCTGGCAGCCTCCCGCCGGCTCACCCGCCCCTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGTGAGCCCGTTGGGAAACGACCTTTCATCATGTCTCCACAGCTCCTGTACGAC---GCCGCTCCCCTCACCTGGTCCCGCTGCAGCCGCCAGTACATCACCAGGTTCCTTGAGTAAG------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113299780 778 - 169600520 CCTGCCGCAGTActgcaatttcctggctgtgttaccctggctagttccttagactctctgagcctccctgggggtaa------------taatgagaactgagtgagactgtgtttctg-aaagtgcttagcatggcccctggcacatagtagatgctcaggaaa-----taatttttctCGTGTCCTTCCCAAGGATGGTCTCTGGAG-ACCTTTCTGTGACACAGCAG---CTCA---------GAT-CCCCTAACTCAAGTGCACAGCCTTGGGACAAGGACC---TGTGAGT---GGGAACCTCTGTCAGACTGTTCTTGAGGCCAGTGAGCTTGCAGGG------------GCCATC-ACGGGCCTCCATCTGTGCCACCTGGTTTGCCATTGCTGGCCAGCCCCCAG-GCAGGGGCAGGGCTGCTCTGGGTC-CCTGGCC---CTCa-tt-----tcaggct----------------ggagcaggagcccttggggtcctagctgtcataccctcattttacattaa-ggaaac--tgaggctcagagaggggaatgtgactttctgcagccattggg--tgtggccattgggtggcagaac--cagccct-ggaattagggctGTGCCCCTTGTGGGTCTCCAGGGGA-GGGCAGGCTGGCAGCCTCCCGCCAGCTCACCCGCCCCTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGTGAACCCGTTGGGAAACGGCCTTTCATCATGTCTCCACAGCTCCTGTACGAC---GCCGCTCCTCTCACCTGGTCCCGCTGCAGCCGCCAGTACATCACCAGGTTCCTTGAGTAAG------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61588224 690 + 171882078 CCTGCCGCAGTACTGCAATTTCCTGGCTGTGTTACGCTCACTAGTTCCTCAGACTCTCTGAGcctccctgggagtaa------------taatgagaactgagtgagattgtttttctg-aaagtgcttagcatggcccctggcacatagtagatgctcaggaaa-----taatttttCTCGTGTCCTTCCCAAGGATGGTCTCTGGAG-ACCTTTCTGTGACACAGCAG---CTCA---------GAT-CCCTTAACTCAAGTGCACAGCCTTGGGACAAGGACC---TGTGAGT---GGAAACCTCTGTCAGACTGTTCTTGAGGCCAGTGAGCTTGCAGGG------------GCCATC-ACGGGCCCCCATCTGTGCCACCTGGTTTGCCATTGCTGGCCAGCCCCCAG-GCAGGGGTAGGGCTGCTGTGGGTC-ACTGGCC---CTCA-TT-----TCAGgcc----------------agagcaggagcccct-ggatcctagctgtcataccctcattttacattaa-ggaaa--------ctcagaga-gggaatgtgactttctcaa------ggc--tgcggccattgggtg--------------------------------------------------------------------gcCTCCCGCCAACTCGCCCGCCCCTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGTGAACCCATTGGGAAACGGCCTTTCATCATGTCTCCACAGCTCCTGTACGAC---GCCGCTCCCCCCACCTGGTCCCACTGCAGCCGCCAGTATA----------CCTTGAGGTAG------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3892917 778 +   4820037 CCTGCCGCAGTActgcaatttcctggctgtgttaccctggctagttccttagactctctgagcctccctgggggtaa------------taatgagaactgagtgagactgtgtttctg-aaagtgcttagcatggcccctggcacatagtagatgctcaggaaa-----taatttttctCGTGTCCTTCCCAAGGATGGTCTCTGGAG-ACCTTTCTGTGACACAGCAG---CTCA---------GAT-CCCCTAACTCAAGTGCACAGCCTTGGGACAAGGACC---TGTGAGT---GGGAACCTCTGTCAGACTGTTCTTGAGGCCAGTGAGCTTGCAGGG------------GCCATC-ACGGGCCCCCATCTGTGCCACCTGGTTTGCCATTGCTGGCCAGCCCCCAG-GCAGGGGCAGGGCTGCTCTGGGTC-CCTGGCC---CTCa-tt-----tcaggct----------------ggagcaggagcccttgggatcctagctgtcataccctcattttacattaa-ggaaac--tgaggctcagagaggggaatgtgactttctgcagccattggg--tgtggccattgggtggcagaac--cagccct-ggaattagggctGTGCCCCTTGTGGGTCTCCAGGGGA-GGGCAGGCTGGCAGCCTCCCGCCAGCTCACCCGCCCCTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGTGAACCCGTTGGGAAACGGCCTTTCATCATGTCTCCACAGCTCCTGTACGAC---GCCGCTCCTCTCACCTGGTCCCGCTGCAGCCGCCAGTACATCACCAGGTTCCTTGAGTAAG------
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9759716 778 +  10730278 CCTGCCGCAGTActgcagtttcctggctgtgttaccctggctagttccttagactctctgagcctccctgggggtaa------------taatgagaactgagtgagactgtgtttctg-aaagtgcttagcatggcccctggcacatagtagatgctcaggaaa-----taatttttCTCGTGTTCTTCCCAAGGATGGTCTCTGGAG-ACCTTTCTGTGACACAGCAG---CTCA---------GAT-CCCCTAACTCAAGTGCACAGCCTTGGGACAAGGACC---TGTGAGT---GGGAACCTCTGTCAGACTGTTCTTGAGGCTAGTGAGCTTGCAGGG------------GCCATC-ACGGGCCCCCATCTGTGCCACCTGGTTTGCCATTGCTGGCCAGTCCCCAG-GCAGGGGCAGGGCTGCTCTGGGTC-CCTGGCC---CTCa-tt-----tcaggct----------------ggagcaggagcccttggggtcctagctgtcataccctcattttacattaa-ggaaac--tgaggctcagagaggggaatgtgactttctgcagccattggg--tgtggccattgggtggcagaac--cagccct-ggaattagggctgTGCCCCTTGTGGGTCTCCAGGGGA-GGGCAGGCTGGCAGCCTCCCGCCAGCTCACCCGCCCCTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGTGAACCCGTTGGGAAACGGCCTTTCATCATGTCTCCACAGCTCCTGTACGAC---GCCGCTCCTCTCACCTGGTCCCGCTGCAGCCGCCAGTACATCACCAGGTTCCTTGAGTAAG------
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1316275 734 +  24206276 CCTGCCGCAGTACTGCAATTTCCTGGCTGTGTTACGCTCGCTAGTTCCTCAGACTCTCTGAGcctccctgggagtaa------------taatgagaactgagtgagactgtgtttctg-aaagtgcttagcatggcccctggcacatagtagatgctcaggaaa-----taatttttCTCGTGTCCTTCCCAAGGATGGTCTCTGGAG-ACCTTTCTGTGACACAGCAG---CTCA---------GAT-CCCCTAACTCAAGTGCACAGCCTTGGGACAAGGACC---TGTGAGT---GGGAACCTCTGTCAGACTGTTCTTGAGGCCAGTGAGCTTGCAGGG------------GCCATC-ACGGGCCCCCATCTGTGCCACCTGGTTTGCCATTGCTGGCCAGCCCCCAG-GCAGGGGCAGGGCTGCTGTGGGTC-CCTGGCC---CTCA-TT-----TCAGgcc----------------agagcaggagcccctgggatcctagctgtcataccctcattttacattaa-ggaaa--------ctcagaga-gggaatgtgactttctcaa------ggc--tgctgccattgggtggcagaac--cag----------------------CCCTGTGGGTCTCCAGGGGA-GGGCAGGCTGGCAGCCTCCCGCCAGCTCGCCCGCCTCTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGATGGAAGCGGCAATGACTGTGAACCCGTTGGGAAACGGCCTTTCATCATATCTCCACAGCTCCTGTATGAC---GCCGCTCCCCCGACCTGGTCCCACTGTAGCCGCCAGTATA----------CCTTGAGTTAG------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3883128 778 +   4030761 CCTGCCGCAGTActgcaatttcctggctgtgttaccctggctagttccttagactctctgtgtctccctgggggtaa------------taatgagaactgagtgagactgtgtttctg-aaagtgcttagcatggcccctggcacatagtagatgctcaggaaa-----tAATTTTTCTCGTGTCCTTCCCAAGGATGGTCTCTGGAG-ACCTTTCTGTGACACAGCAG---CTCA---------GAT-CCCCTAACTCAAGTGCACAGCCTTGGGACACGGACC---TGTGAGT---GGGAACCTCTGTCAGACTGTTCTTGAGGCTAGTGAGCTTGCAGGG------------GCCATC-ACGGGCCCCCATCTGTGCCACCTGGTTTGCCATTGCTGGCCAGCCCCCAG-GCAGGGGCAGGGCTGCTCTGGGTC-CCTGGCC---CTCa-tt-----tcaggct----------------ggagcaggagcccttggggtcctagctgtcataccctcattttacattaa-ggaaac--tgaggctcagagaggggaatgtgactttctgcagccattggg--tgtggccattgggtggcagaac--cagtcct-ggaactagggctGTGCCCCTTGTGGGTGTCCAGGGGA-GGGCAGGCTGGCAGCCTCCCGCCAGCTCACCCGCCCCTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGTGAACCCGTTGGGAAACGGCCTTTCATCATGTCTCCACAGCTCCTGTACGAC---GCCGCTCCTCTCACCTGGTCCCGCTGCAGCCGCCAGTACATCACCAGGTTCCTTGAGTAAG------
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4007016 778 +   5013933 CCTGCCGCAGTActgcaatttcctggttgtgttaccctggctagttccttagactctctgagcctccctgggggtaa------------taatgagaactgagtgagaccgtgtttctg-aaagtgcttagcatggcccctggcacagagtagatgctcaggaaa-----taatttttctTGTGTCCTTCCCAAGGATGGTCTCTGGAG-ACCCTTCTGTGACACAGCAG---CTCA---------GAT-CCCCTAACTCAAGTGCACAGCCTTGGGACAAGGACC---TGTGAGT---GGGAACCTCTGTCAGACTGTTCCTGAGGCCAGTGAGCTTGCAGCG------------GCCATC-ACGGGCCCCCATCTGTGCCACCTGGTTTGCCGTTGCTGGCCAGCCCCCAG-GCAGGTGCAGGGCTGCTCTGGGTC-CCTGGCC---ctca-tt-----tcaggcc----------------acagcaggagcccctggggtcctagctgtcataccctcattttacattaa-ggaaac--tgaggctcagagaggggaatgtgactttctgcagccattggg--tgtggccattgggtggcagaat--cagccct-agaactaggactgTGCACCTTGTGGGTCTCCAGGGGA-GGGCAGGCTGGCAGCCTCCCGCCAGCTCACCCGCCCCTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGTGAACCTGTTGGGAAACGGCCTTTCATCATGTCTCCACAGCTCCTGTACGAC---GCCGCTCCCCTCACCTGGTCCCGCTGCAGCCGCCAGTACATCACCAGGTTCCTTGAGTAAG------
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113733358 759 - 132174527 cctgccacagtaccgtagtttcctggctctgttaccctggctagttccataga--ctctgagcct-cctgggggtaa------------taatgagaactgagtgagattctgtttctg-aaaggacctagcatggctcctggcacatagtagatgctcaggaaa-----tCATTTTTCTCATGTGCTTCCCAAGAATGGTCTCAGGCG-GCCTTGCCGTGATGCAGCAG---CTCA---------GAT-CCCTTAACTCAAGTGCACAACCTTGGTACAAGGACC---TGTGAGG---GGAAACATCTGTCAAACTGTTCTTCAGGCCAGTGAGCTTGCAGGG------------GCCATC-GCAGGCCCCCATCTGTGCCACCTGGTTTGCCATTGCTGGCCAGCACC-----------CAGG------CTGGGTC-CCTGGCC---CTCATTTCAGGCtcaggct----------------ggagcaggagcacttgggatactggctttcattcccccattttacatgaagggaaac--tgaggctcagaga-gggaatgtgactttcttaa------agc--cgcgactgtt-aatggcagaac--caggcctgggaactaggacagtgtgcctTGTAGGTCTCCAGGGGA-GGGCAGGCTGGCAGCCTCCCGCCAGCTCACCTGCCCCTGGGGTCTGTGCTCTCACACAGTTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGTGAGCCGGTTGGGAAACGGCCTTTCATCATGTCTCCACAGCTCCTGTACGAC---GCTGCTCCCCTCACCTGGTCCCGATGCAGCCGCCAGTACATCACCAGATTCCTGGAGTAAG------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              61153 775 -    125141 cctgccgcaggaccatcttttcctagctctgttaccctggctagttctgtaga--ctctgagcct-ccagggagttg------------taatcagaaccgagtgacactctgtttctg-aaaggacctagcatggctcccggcacatagtagatgctcaggaaa-----tcatttttCTCATGTGCTTCCCAACGACGGTCTCAGGAG-ACCTTGCCATGATGCAGCAG---TTCA---------GAT-CCCTTAACTCAAGTCCACAGCCTTGGGACAAGGACC---TGTGAGG---GGGAACCTCTGTCAAACTGTTCTTGAGGCCAGCGAGCTTGCAGGG------------GCCATC-GCAGGCCCGCATCTGTGCCACCTGGTTTGCTATTGCTGGCCAGCGCCTGT-GCAGGAGCAGGGGTGCTCTGGGTC-CCTGGCC---CTCA-TTCAGGCtcaggct----------------ggagcaggagcgtttggggtactggctttcattcccccattttacatgaagggaaac--tgaggctcagaga-gggaatgtgactttctcca------ggc--tgcggccgttgggtggcagaac--caggcctgggaactaggACAGTGCGCCCTGTAGGTCTCCGGGGGA-GGGCAGGCTGGCAGCCTCCCGCCGGCTCACCCACCCCTGGGGTCTGTGCTCTCACACAGTTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGTGAGCCGGTTGGGAAACGGCCTTTCATCATGTCTCCACAGCTCCTGTACGAC---GCCGCTCCCCTCACCTGGTCCCGATGCAGCCGGGAGTACATCACCAGGTTCCTTGAGTAAG------
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        74453 775 +  11725426 cctgccgcagtaccgcagtttcctggctctattcccctgtctagttccgtaga--ctctgagcct-cctgggggtaa------------taatcagaaccgagtgacactctgtttctg-aaaggacctagcatgactcccagcatatagtagatgctcaggaaa-----tcatttttCTCATGTGCTTCCCAAGGACGGTCTCAGGAG-ACCTTGCCGTGATGCAGCAG---CTCA---------GAT-CCCTTAACTCAAGTCCACGGCCTTGGGACAAGGACC---TGTGAGG---GAGAACCTCTGTCAAACTGTTCCTGAGGCCAGCGACCTTGCAGGG------------GCCATC-ACAGGCCCCCATCTGTGCCACCTGGTTTGCCATTGCTGGCCAGCGCCCGG-GCAGGAGCAGAGGTGCTCTGGGCC-CCTGGCG---CTCA-TGCGCGCtcaggct----------------ggagcaggagcgcttgggatcctggctttcattcccccattttacatgaagggaaac--tgaggctcagaga-gggaatgtgactttctcaa------ggc--cgcggccattgggtggcagaac--caggcctgggaactaggACAGTGCGCCTTGTAGGTCTCAGGGGGA-GGGCAGGCTGGCAGCCTCCCGCCGGCTCACCCGCCCCTGGGGTCTGTGCTCTCACACAGTTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGTGAGCCGGTTGGGAAACGGCCTTTCATCATGTCTCCACAGCTCCTGTACGAC---GCTGCCCCCCTCACCTGGTCCCGATGCAGCCGCGAGTACATCACCAGGTTCCTTGAGTAAG------
i cebCap1.NW_016107334v1    I 88 C 0
s aotNan1.NW_018503093v1       669688 748 +    730879 CCTGCCGCAGGACCGCGGTTTCCTGGCtctgttaccctggctagttccgtaga--ctctgagcct-cctgggggtaa------------taatcagaaccgagtgagactctgtttctg-aaaggacctagcatggctcccggcacatagtagatgctcaggaaa-----tcatttttCTCATGTGCTTCCCAAGAATGGTCTCAGGAG-ACCTTGCCGTGATGCAGCGG---CTCA---------GAT-CCCTTAACTCAAGGGCACAGCCTTGGGACAAGGACC---TGTGAAG---CGGAACCTCTGTCAAACTGTGCTTCAGGCCGGCGAGCTTGCAGGG------------GCCATC-GCAGGCCCCCATCTGTGCCACCTGGTTTGCCATTGCCGGCCAGCGCCCGG-GCGGGAGCAGGGGTGCTTTGG-------------------GTCAGGCTCAGGCT----------------GGAGCAGGAGCGcttgggaaactggctttcgtttccccattttacatgaagggaaac--tgaggctcagaga-gggaatgtgactttctcaa------ggc---------------tggcagaac--caggcctgggaactaggACAGTGCGCCCTGTAGGTATCTGGGGGA-GGGCAGGCTGGCAGCCTCCCGCCGGCTCACCCGCCCCTGGGGTCTGTGCTCCCACACAGTTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGTGAGCCGGTTGGGAAACGGCCTTTCGTCATGTCTCCACAGCTCCTGTACGAC---GCCGCTCCCCTCACCTGGTCCCGATGCAGCCGCCAGTACATCACCAGGTTCCTTGAGTAAG------
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5768593 734 -  36342412 TTTGCCACATt-ctgccatatcctggttgtgttctccgggctagttccttggcctcttggagcctctctggggataa------------tcat--gaagtgaatgagacagcgtttctg-aacatgctcagcatggtgccgggcac-----------------CA-----CTGTTCTCTTCCTGTCCTTCCTGAGGATGATTTCTTGGG-CCTTTTTCGTGATGCAGCAG---TTCA---------TCT-CCCTTCACTCCAGCGCACAGCCTTGGGATAGGAGCTGTGTGTAGGT---GGGGACCCCTGTTGGACTGCTCTT-AAGTCAGTGAGGTTGCAGGG------------GTC---------------------------GGGTTG--------GGCCAGCCCCTGG-GCAAGAG-AGGGCTGCTCTGAGTC--CTGGCT---CTCA-CT-----TTTGGCTCAGGTGGGTGCACctggaagtggaccccctcaggacactagctgtcatacctgcattttgcattga-ggaaac--tgaggcttggaga-gggcatgtgactttctcaa------agc--catagccatttgatagcagagc--tggctctgggaattaagactGTATACCTCATAGGTCTCTGGGGGAGGGGCAGGCTGACAG-CTCCCTCCGGCTCACCTGCCCCTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGTGAGCCTGTTGGGAAACGGCCTTTCATCATGTCTCCACAGCTCCTGTACGAC---GCTGCTCCCCTCACCTGGTCCCGCTGCAGCCGAGAGTACATCACCAGGTTCCTTGAGTAAG------
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  90180050 726 + 124595110 -----------------TCCTCCTGGCTGTGTTACTCTGGCAGGCTCTACAGCCTCTCTGAGGCTCTCTGAG----A------------TGGTGAGGACTGAGTGA------GTTAGTA--------TTATCATGAGTCCTGGTTCATAGCTGGTGCCCAGGAACGTTTTTTTTTTTTTTTGAGCCGTTCCCAAGGATGACCTCTTGAG-AC-TTTCTGGG-------------------------GAC-CTCTTAACTCAAGTTCACAACCTGAGGTCA-----C----------------------------------CTTGGGGCCAGTGAGGTTGTAGGGTCGCAATAGACTTCCAGCAATAGACTTCCATATGTGTCTCCTGGATTGCCATTCTTGGCTAGCTCTGGGCACAAGAATGTGGCTG-TGAGGATC-TCAAAACAGGctca-tt-----tcaggctcagcctgatccatgt-agataagaaacccagggaatact-gctgtcacccccatattctgtattag-ggaaac--ggaggctcagaga-tactgtgtggctttctcaa------ggtcatgcagccattgggtgacaga------TAATTGGGAATTGGGACTGTACCCCTTGCAGGCCTCCATGGGA-AGGAGGCCTGGGGGCCTCCTGCT-GCTCACTCGCCCCTGGGGCCTGTGCTCTCACGCAGTTTTGGCATTCAGCATGACGGCACCGGCAATGACTGTGAATCCATTGGGAAACGGCCTTTCATCATGTCTCCACAGCTCCTGTATGACAGAGGCATTCCTCTTACCTGGTCCCGATGCAGCCGCGAGTACATCACCAGGTTCCTTGAGTAAG------
i mm10.chr9                 C 0 I 1229
s canFam3.chr3               58198654 692 +  91889043 tctgccccacatctgccattcctgggctatgttccctgcgc------------ctctctgagcccccctggg--cag------------ttctgaggactgagcaagatggggtttctg-tgagtgcacagcacggcgcccagcacgttatacgtgctgagtaaa-----tagcatttctTGTCTCCTTCCCGAGGATGCCCTCTTGAGAACTTTTCTATGACAGGGCGG---CTCA---------GATGCCCCTCACTGCAGTGCATAGCCTCAGGCTGAGGACC----------------------CGTCAGGCTGTTCTAGGGGCCACGGAGGGTGCAGGG------------GCT----GCGGTCCCCA--CCGTGCCACCTGGCTCACCCCTGTAGG-TGCTCATCAG-GCTCGAGCAA---------------CCTGTCC---CTGG-AG-----GAGGGCC--------------------CAGGGAGTACAGAGGTCCCAAC----------ACATCTTAGGTCAG-GGAGGC--GGAGGCTTCCAGA--------------------------GGG--CTCAGCCTTCCTGTGGCCACACAGCAGTTTGAGGGTTTGGTGGATTCGTGCCAGCAGGCCTGCGGGAAG-GGGCGGGCTGGCGGCTTCCC-TCGGCTCACTCGCCCCTGGGGCCTGTGCTCTCACGCAGCTTTGGCATTCAGCATGACGGAAGCGGCAATGACTGCGAGCCCATTGCGAAACGGCCTTTCATCATGTCTCCACAGCTCCTGTACGAC---ACTGTCCCCCTCACCTGGTCCCGTTGCAGCCGAGAGTACATCACCAGGTTCCTGGAGTAAG------
i canFam3.chr3              C 0 I 3
s dasNov3.JH579681             825522 772 +   1727078 TCTGCTCCAATActgccattttctgcctgggttactttggcta----tttagcttccgtggacctcactggggataacttagtgggcatttctgggggttgggagaggtagaatatctg-aaaaggcttagcctggtgcctgacatatagtagatgctGGGAATG-----TAAATTTTCTCGAGTCCTCCCTGAGGAAGGTATCTTGAG-TCCTTTCTGTGATGAACTAGGACCTCATTAGTTCCTAGT-CTCTTAATTCATGTACACAGCCTTAGGGCAAGGCCC---TGGGAGGTGAGGGGACCTCTGTCAGTTGGTTTCTGGAGCCGGTGAGTTTGCTGGT------------GCTACG-ATGGGCCCCCGTTGGTGCCACCCAGCTTGCTGTCGTTGGCCAGCCCCAGG-GCAGGAGC-GGGCTGCTCTGGGTCCCCTGGCA---CTCA-TT-------CACCC----------------AGAGGAGGACCCTGTGGGTCACTGACGGTCAG------Atttcagat----ggaagctttgaggctcagaac-gggaatgtgactcatccaa------ggccatacagccat------------c--aggccctgggagccagga-------ACTTGCAGGCCTCGGGGGAG-GGGCAGGCTGGCATCCTCCCGCCAGCTCACCCGCCCCTGGGGCCTGTGCTCTCACACAGTTTTGGCATTCAGCATGACGGAAGAGGCAATGACTGTGAGCCCCTTGGGAAACAGCCTTTCATCATGTCTCCACAGCTCCTGTACAAG---GCTGTTCCCCTCACCTGGTCCCGCTGCAGCCGGGAGTACATCACTAGGTTCCTTGAGTAAG---TCC
i dasNov3.JH579681          C 0 C 0

a score=41537.000000
s hg38.chr15_KI270850v1_alt     17392 5 +    430880 CTCCC
s panTro5.chr15              23346350 4 -  83230942 -TCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23043437 4 -  99763055 -TCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2533274 5 +   2806052 CTCCC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22704670 4 - 121039945 -TCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113300558 4 - 169600520 -TCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61588914 4 + 171882078 -TCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3893695 4 +   4820037 -TCCT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9760494 4 +  10730278 -TCCT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1317009 4 +  24206276 -TCCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3883906 4 +   4030761 -TCCT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4007794 4 +   5013933 -TCCT
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113734117 4 - 132174527 -TCCT
i calJac3.chr10             C 0 I 4
s saiBol1.JH378378              61928 4 -    125141 -TCCC
i saiBol1.JH378378          C 0 I 4
s cebCap1.NW_016107334v1        75228 4 +  11725426 -TCCC
i cebCap1.NW_016107334v1    C 0 I 5022
s aotNan1.NW_018503093v1       670436 4 +    730879 -TCCC
i aotNan1.NW_018503093v1    C 0 I 4
s otoGar3.GL873530            5769327 4 -  36342412 -TCCC
i otoGar3.GL873530          C 0 I 4
s canFam3.chr3               58199349 5 +  91889043 CACCC
i canFam3.chr3              I 3 C 0
s dasNov3.JH579681             826294 4 +   1727078 CTCC-
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90180776 1229 + 124595110 I

a score=15300.000000
s hg38.chr15_KI270850v1_alt     17397 1 +    430880 C
s panTro5.chr15              23346354 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23043441 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2533279 1 +   2806052 C
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22704674 1 - 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113300562 1 - 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61588918 1 + 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3893699 1 +   4820037 C
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9760498 1 +  10730278 C
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1317013 1 +  24206276 C
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3883910 1 +   4030761 C
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4007798 1 +   5013933 C
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113734125 1 - 132174527 C
i calJac3.chr10             I 4 C 0
s saiBol1.JH378378              61936 1 -    125141 C
i saiBol1.JH378378          I 4 C 0
s aotNan1.NW_018503093v1       670444 1 +    730879 C
i aotNan1.NW_018503093v1    I 4 C 0
s otoGar3.GL873530            5769335 1 -  36342412 C
i otoGar3.GL873530          I 4 C 0
s canFam3.chr3               58199354 1 +  91889043 C
i canFam3.chr3              C 0 I 5254
s dasNov3.JH579681             826298 1 +   1727078 C
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90180776 1229 + 124595110 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I

a score=690182.000000
s hg38.chr15_KI270850v1_alt     17398 100 +    430880 CAG-CCCTGAGCCCCTACGCCTTGATCCATGAGATCAAGGTCTAATGGGGGAGATGCAGACAGTCACACTGCAGGGTCGGGGTAGAGGGAAG-CAGAGGGGC
s panTro5.chr15              23346355 100 -  83230942 CAG-CCCTGGGCCCCTATACCTTGATCCATGAGGTCAAGGTCTACTAGGAGAGATGCAGACAGTCATACTGCAGGGCCGGGGTAGAGGGAAG-CAGAGGGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23043442 100 -  99763055 CAG-CCCTGGGCCCCTATACCTTGATCCATGAGGTCAAGGTCTACTGGGAGAGATGCAGACAGTCATACTGCAGGGCCGGGGTAGAGGGAAG-CAGAGGGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2533280  99 +   2806052 TAG-CCCTGAGCCCCCACGCCTTGATCCATGAGATCAAGGTCTAATGGGGGAGATGCAGACAGTCACACTGCAGGGTCGGGGTAGAGGGAAG-CAGA-GGGC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22704675 100 - 121039945 cag-ccctgggcccctatgccttgatccatgaggtgaaggtctactgggagagatgcagacagtcatactgcagggcaggggtagagggaag-cagaggggc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113300563  95 - 169600520 CAG-CACCGGGCCCCTGCGCCTTAATCCATGAGGTCAAGGTCTACTGGGAGAGCTGCAGACAGTCACATTGGA-----GGGGTAGAGGGAAG-CAGAGGGAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61588919  52 + 171882078 TAG-CACCGGGCCCCTACGCCTTGATCCATGAGGTCAAGGTCTACTGGGAGAG-------------------------------------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3893700  83 +   4820037 CAG-CACCGGGCCCCTGCGCCTTAATCCATGAGGTCAAGGTCTACTGGGAGAGCTGCAGACAGTCACATTGGA-----GGGGTAGAGGG-------------
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9760499  95 +  10730278 CAG-CACCGGGCCCCTGCGCCTTAATCCATGAGGTCAAGGTCTGCTGGGAGAGCTGCAGACAGTCACATTGGA-----GGGGTAGAGGGAAG-CAGAGGGAC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1317014  95 +  24206276 TAG-CACCGGGCCCCTACTCCTTGATCCACGAGGTCAAGGTCTACTGGGAGAGCTGCAGACAGTCACATTGGA-----GGGGTAGAGGGAAG-CAGAGGGAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3883911  95 +   4030761 CAG-CACCGGGCCCCTGCGCCTTAATCCATGAGGTCGAGGTCTGCTGGGAGAGCTGCAGACAGTCACATTGGA-----GGGGTAGAGGGAAG-CAGAGGGAC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4007799  95 +   5013933 CAG-CACCAGGCCCCTACGCCTTGATCCATGAGGTCAAGGTCTACTGGGAGAGCTGCAGACAGTCAcactgga-----ggggtagagggaag-cagagggac
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113734126  96 - 132174527 CAG-CCCTGGGCCCCTGTGCCTTGATCCATGAGGTCAGGGTCtaatgggagaggtg----tagtcatgttgcagggctggggtacaaggaag-cagaggggc
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              61937  95 -    125141 cag-ccctgggcccctgcgccttgatccacgaggtcaaggtctaatgggagaggtg----cagtcacgttgca-ggccggggtacagggaag-cagaggggc
i saiBol1.JH378378          C 0 C 0
s aotNan1.NW_018503093v1       670445  97 +    730879 CAGCCCCCGGGCCCCTGCGCCTTGATCCGTGAGGTCAAGGCCTGATGGgagaggtg----cagtcatgttgcagggccggggtacagggaag-cagaggggc
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5769336  92 -  36342412 CAG-CCTGGGGCACCCGCACTTTA---TGTGAGGTCATGGTCCAAGGGGA-AGATG----CAGTGTCATTGCAGTGT-TGGGTAGAGGGATGTTAGAGGGGT
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH579681             826299  94 +   1727078 CAG-CCCTGGGGACCCAT-------TGTGGGAGGTCAAGGACTAATAGGGGAGATGCAGGCATTGTCATTACAGCGTCCAggctgggggagcccagagggac
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90180776 1229 + 124595110 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I

a score=7098.000000
s hg38.chr15_KI270850v1_alt     17498 1 +    430880 A
s panTro5.chr15              23346455 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23043542 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2533379 1 +   2806052 A
i gorGor5.CYUI01000037v1    C 0 C 0
s rheMac8.chr7              113300658 1 - 169600520 A
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9760594 1 +  10730278 A
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1317109 1 +  24206276 A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3884006 1 +   4030761 A
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4007894 1 +   5013933 a
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113734222 1 - 132174527 a
i calJac3.chr10             C 0 I 886
s saiBol1.JH378378              62032 1 -    125141 a
i saiBol1.JH378378          C 0 I 15
s aotNan1.NW_018503093v1       670542 1 +    730879 a
i aotNan1.NW_018503093v1    C 0 I 2845
s otoGar3.GL873530            5769428 1 -  36342412 A
i otoGar3.GL873530          C 0 I 108
e mm10.chr9                  90180776 1229 + 124595110 I
e dasNov3.JH579681             826393 0 +   1727078 C
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e macNem1.NW_012011533v1      3893783 0 +   4820037 C
e macFas5.chr7               61588971 0 + 171882078 C
e nomLeu3.chr6               22704775 0 - 121039945 C

a score=53876.000000
s hg38.chr15_KI270850v1_alt     17499 56 +    430880 AGGTCTCGAT--------------------CCATGA--GGTCAAGGTCTAC-TAGGAAAGATGCAGACAGTCATACTGC
s panTro5.chr15              23346456 56 -  83230942 AGGTCTTGAT--------------------ACATga--ggtcaaggtctaa-tgggggtgatgcagacagtcacactgc
i panTro5.chr15             C 0 T 86
s panPan2.chr15              23043543 56 -  99763055 AGGTCTTGAT--------------------CCATga--ggtcaaggtctaa-tgggggtgatgcagacagtcacactgc
i panPan2.chr15             C 0 T 86
s gorGor5.CYUI01000037v1      2533380 56 +   2806052 AGGTCTTGAT--------------------CCATGA--GGTCAAGGTCTAC-TAGGAAAGATGCAGACAGTCATACTGC
i gorGor5.CYUI01000037v1    C 0 C 0
s rheMac8.chr7              113300659 30 - 169600520 AGGTCTTGAT--------------------CTGTga--ggtcaaggtctaat---------------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61588971 22 + 171882078 ------------------------------CTGCAGACAGTCACATTGGAGG---------------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3893783 42 +   4820037 -------AAGCAGAGGGACAAGGTCTTGATCTGTga--ggtcaaggtctaa----------------------------
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9760595 29 +  10730278 AGGTCTTGAT--------------------CTGTga--ggtcaaggtctaa----------------------------
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1317110 29 +  24206276 AGGTCTTGAT--------------------CTGTga--ggtcagggtctaa----------------------------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3884007 29 +   4030761 AGGTCTTGAT--------------------CTGTga--ggtcaaggtctaa----------------------------
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4007895 29 +   5013933 aggtcttgat--------------------ctgtga--ggtcaaggtctaa----------------------------
i colAng1.NW_012114844v1    C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826393  0 +   1727078 C
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e nomLeu3.chr6               22704775  0 - 121039945 C
e saiBol1.JH378378              62033 15 -    125141 I

a score=52657.000000
s hg38.chr15_KI270850v1_alt     17555 85 +    430880 AGGGCCGTGGTAGAGGGAAGCAGAAGGGCAAGGTCTTGATCTGTgaggtcaaggtctaatgggggagatgcagacagtcatactg
s panTro5.chr15              23346426 85 -  83230942 AGGGCCGGGGTAGAGGGAAGCAGAGGGGCAAGGTCTTGATACATgaggtcaaggtctaatgggggtgatgcagacagtcacactg
i panTro5.chr15             T 86 I 1
s panPan2.chr15              23043513 85 -  99763055 AGGGCCGGGGTAGAGGGAAGCAGAGGGGCAAGGTCTTGATCCATgaggtcaaggtctaatgggggtgatgcagacagtcacactg
i panPan2.chr15             T 86 I 1
s gorGor5.CYUI01000037v1      2533436 18 +   2806052 AGGGCCGTGGTAGAGGGA-------------------------------------------------------------------
i gorGor5.CYUI01000037v1    C 0 C 0
s rheMac8.chr7              113300689 25 - 169600520 ------------------------------------------------------------gggggagatgcagacagtcatactg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61588993 77 + 171882078 --------GGTAGAGGGAAGCAGAGGGACAAGGTCTTGATCTGTgaggtcaaggtctaatgggggagaggcagacagtcatactg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3893825 26 +   4820037 -----------------------------------------------------------tgggggagatgcagacagtcatactg
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9760624 26 +  10730278 -----------------------------------------------------------tgggggagatgcagacagtcatactg
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1317139 26 +  24206276 -----------------------------------------------------------tgggggagaggcagacagtcatactg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3884036 26 +   4030761 -----------------------------------------------------------tgggggagatgcagacagtcatactg
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4007924 26 +   5013933 -----------------------------------------------------------tgggggagatgcagacagtcatactg
i colAng1.NW_012114844v1    C 0 C 0
s dasNov3.JH579681             826393 16 +   1727078 --------------------------------------------------------ccctgatagagagggg-------------
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e nomLeu3.chr6               22704775  0 - 121039945 C
e saiBol1.JH378378              62033 15 -    125141 I

a score=2800.000000
s hg38.chr15_KI270850v1_alt     17640 1 +    430880 c
s rheMac8.chr7              113300714 1 - 169600520 c
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61589070 1 + 171882078 c
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3893851 1 +   4820037 c
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9760650 1 +  10730278 c
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1317165 1 +  24206276 c
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3884062 1 +   4030761 c
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4007950 1 +   5013933 c
i colAng1.NW_012114844v1    C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826409 0 +   1727078 C
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e panPan2.chr15              23043598 1 -  99763055 I
e nomLeu3.chr6               22704775 0 - 121039945 C
e saiBol1.JH378378              62033 15 -    125141 I
e gorGor5.CYUI01000037v1      2533454 0 +   2806052 C
e panTro5.chr15              23346511 1 -  83230942 I

a score=94895.000000
s hg38.chr15_KI270850v1_alt     17641 25 +    430880 agggccagggtagaaggaagcagag
s panTro5.chr15              23346512 25 -  83230942 agggccagggtagagggaaacagag
i panTro5.chr15             I 1 C 0
s panPan2.chr15              23043599 25 -  99763055 agggccagggtagagggaaacagag
i panPan2.chr15             I 1 C 0
s gorGor5.CYUI01000037v1      2533454  8 +   2806052 -----------------AAGCAGAG
i gorGor5.CYUI01000037v1    C 0 C 0
s rheMac8.chr7              113300715 25 - 169600520 agagccggggtagagggaagcagag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61589071 25 + 171882078 agagccggggtagagggaagcagag
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011533v1      3893852 25 +   4820037 agagccggggtagagggaagcagag
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9760651 25 +  10730278 agagccgggttagagggaagcggag
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1317166 25 +  24206276 agagccggggtagagggaagcagag
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3884063 25 +   4030761 agagccggggtagagggaagcagag
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4007951 25 +   5013933 agagccggggtagagggaagcagag
i colAng1.NW_012114844v1    C 0 C 0
s dasNov3.JH579681             826409  9 +   1727078 -aggccaggg---------------
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e nomLeu3.chr6               22704775  0 - 121039945 C
e saiBol1.JH378378              62033 15 -    125141 I

a score=4500.000000
s hg38.chr15_KI270850v1_alt     17666 1 +    430880 g
s panTro5.chr15              23346537 1 -  83230942 g
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23043624 1 -  99763055 g
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2533462 1 +   2806052 G
i gorGor5.CYUI01000037v1    C 0 C 0
s rheMac8.chr7              113300740 1 - 169600520 g
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3893877 1 +   4820037 g
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9760676 1 +  10730278 g
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1317191 1 +  24206276 g
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3884088 1 +   4030761 g
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4007976 1 +   5013933 g
i colAng1.NW_012114844v1    C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826418 0 +   1727078 C
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e macFas5.chr7               61589096 1 + 171882078 I
e nomLeu3.chr6               22704775 0 - 121039945 C
e saiBol1.JH378378              62033 15 -    125141 I

a score=16500.000000
s hg38.chr15_KI270850v1_alt     17667 3 +    430880 ggc
s panTro5.chr15              23346538 3 -  83230942 ggc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23043625 3 -  99763055 ggc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2533463 3 +   2806052 GGC
i gorGor5.CYUI01000037v1    C 0 C 0
s rheMac8.chr7              113300741 3 - 169600520 ggc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61589097 3 + 171882078 ggc
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011533v1      3893878 3 +   4820037 ggc
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9760677 3 +  10730278 ggc
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1317192 3 +  24206276 ggc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3884089 3 +   4030761 ggc
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4007977 3 +   5013933 ggc
i colAng1.NW_012114844v1    C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826418 0 +   1727078 C
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e nomLeu3.chr6               22704775 0 - 121039945 C
e saiBol1.JH378378              62033 15 -    125141 I

a score=71654.000000
s hg38.chr15_KI270850v1_alt     17670 13 +    430880 atct-ggcaaaaat
s panTro5.chr15              23346541 13 -  83230942 acct-ggcaaagat
i panTro5.chr15             C 0 I 3
s panPan2.chr15              23043628 13 -  99763055 acct-ggcaaagat
i panPan2.chr15             C 0 I 3
s gorGor5.CYUI01000037v1      2533466 14 +   2806052 ATCTGGGCAAAAAT
i gorGor5.CYUI01000037v1    C 0 I 3
s nomLeu3.chr6               22704775 13 - 121039945 acct-ggcaaagat
i nomLeu3.chr6              C 0 I 3
s rheMac8.chr7              113300744 13 - 169600520 acct-ggcaaagat
i rheMac8.chr7              C 0 I 3
s macFas5.chr7               61589100 13 + 171882078 acct-ggcaaagat
i macFas5.chr7              C 0 I 3
s macNem1.NW_012011533v1      3893881 13 +   4820037 acct-ggcaaagat
i macNem1.NW_012011533v1    C 0 I 3
s cerAty1.NW_011999477v1      9760680 13 +  10730278 acct-ggcaaagat
i cerAty1.NW_011999477v1    C 0 I 3
s chlSab2.chr29               1317195 13 +  24206276 acct-ggcaaagat
i chlSab2.chr29             C 0 I 3
s manLeu1.NW_012102632v1      3884092 13 +   4030761 acct-ggcaaagat
i manLeu1.NW_012102632v1    C 0 I 3
s colAng1.NW_012114844v1      4007980 13 +   5013933 acct-ggcaaagat
i colAng1.NW_012114844v1    C 0 I 3
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826418  0 +   1727078 C
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e saiBol1.JH378378              62033 15 -    125141 I

a score=919572.000000
s hg38.chr15_KI270850v1_alt     17683 176 +    430880 gtgctggcatcccaaatgtcctcctggaagggacacttgagcttgaacttggagaaggagtgagaattcacacatgtgcagaagggagaagaatggcgttcctggtagaggaagcctga-gaaaggcctgcagcggtaaaggagtgggagagctttcagggaacggcaGAACCGTAA
s panTro5.chr15              23346557 169 -  83230942 gtgccggcatcccaaatgtcctcctggaagg-------aggcttgaacttggaggaggagcgagaattcacacatgtgcagaagggagaagaatggtgttcttggtagaggaagcctga-gaaaggcctgtagcggtaaaggagcgggagagctttcaggtaacggcggaaccctga
i panTro5.chr15             I 3 I 16
s panPan2.chr15              23043644 131 -  99763055 gtgccggcatcccaaatgtcctcctggaagg-------aggcttgaacttggaggaggagcgagaattcacacatgtgcagaagggagaagaatggtgttcttggtagaggaagcctaa-gaaaggcctgtagcggtaa--------------------------------------
i panPan2.chr15             I 3 C 0
s gorGor5.CYUI01000037v1      2533483 176 +   2806052 CTGGCTGCGTCCCAAATGTCCTCCTGGAAGGGACACCTGAGCTTGAACTTGGAGAAGAAGCGAGAATTCACACATGTGCAGAAGGGAGAAGAATGGCGTTCCTGGTAGAGGAAGCCTGA-GAAAGGCCTGCAGCGGTAAAGGAGTGGGAGAGATTTCAGGGAACGGCAGAACCGTAA
i gorGor5.CYUI01000037v1    I 3 C 0
s nomLeu3.chr6               22704791 131 - 121039945 gtgctggcgtcccaaatgtcctcctggaatg-------aggcttgaacttggaggaggagcgagaattcacacatgtgcagaagggagaagaatggtgttgtcggtagaggaagcctga-gaaaggcctgcagccgtaa--------------------------------------
i nomLeu3.chr6              I 3 C 0
s rheMac8.chr7              113300760 153 - 169600520 gtgctggcgtcccaaatgtcctcctcgaagggacacctgagcttgaacttggaggaggagcgagaattcacacatgtgcagaagggagaagaacggcgttcctggtagaggaagcctga-gaaaggcctgcagccgtgaagcagcgggagagct-----------------------
i rheMac8.chr7              I 3 C 0
s macFas5.chr7               61589116 152 + 171882078 gtgctggcgtcccaaatgtcctcctggaagggacacttgagcttgaacttggaggaggagcgagaattcacacatgtgcagaagggataagaatggcgttcctggtagaggaagcctga-gaaaggcctgcagccgtgaaggagtgggaaaga------------------------
i macFas5.chr7              I 3 C 0
s macNem1.NW_012011533v1      3893897 153 +   4820037 gtgctggcgtcccaaatgtcctcctcgaagggacacctgagcttgaacttggaggaggagcgagaattcacacatgtgcagaagggagaagaatggcgttcctggtagaggaagcctga-gaaaggcctgcagccgtgaaggagcgggagagct-----------------------
i macNem1.NW_012011533v1    I 3 C 0
s cerAty1.NW_011999477v1      9760696 153 +  10730278 gtgctggcgtcccaaatgtcctcctcgaagggacacctgagcttgaacttggaggaggagcgagaattcacacatgtgcagaagggagaagaatggcgttcctggtagagaaagcctga-gaaaggcctgcagccgtgaaggagcgggagagct-----------------------
i cerAty1.NW_011999477v1    I 3 C 0
s chlSab2.chr29               1317211 152 +  24206276 gtgctggcatcccaaatgtcctcctggaagggacacttgagcttgaacttggaggaggagcgagaattcacacatgtgcagaagggataagaatggcgttcctggtagaggaagcctga-gaaaggcctgcagccgtgaaggagtgggaaaga------------------------
i chlSab2.chr29             I 3 C 0
s manLeu1.NW_012102632v1      3884108 153 +   4030761 gtgctggcgtcccaaatgtcctcctcgaagggacacctgagcttgaacttggaggaggagcgagaattcacacatatgcagaagggagaagaatggcgttcctggtagaggaagcctga-gaaaggcctgcagccgtgaaggagcaggagagct-----------------------
i manLeu1.NW_012102632v1    I 3 C 0
s colAng1.NW_012114844v1      4007996 153 +   5013933 gtgctggcgtcccaaatgtcctcctcgaagggacacctgagcttgaacttggaggaggagcgagaattcacacatgtgcagaagggagaagaatggcgctcctggtagaggaagcctga-gaaaggcctgcagccatgaaggagcgggagagct-----------------------
i colAng1.NW_012114844v1    I 3 C 0
s saiBol1.JH378378              62048 138 -    125141 gtgctggtgtcccagatgtcctcctggaggccacacctgagcttgaacttggaggaggagcaagagttcatatatgtgcaggatggggaagaatggtcttcctggtggaggaagcctga-gaaaggccggcagccacaa--------------------------------------
i saiBol1.JH378378          I 15 C 0
s dasNov3.JH579681             826418 132 +   1727078 ---------ccctgagtgtccttgcagaggg-acacctgcactaagtcttgaaggctgagcatgaggttgcacatatagagaagggaggagaatagggctcctgggagaagaaacgtgaggaagggcctgtagacatgaagt-----------------------------------
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I

a score=147020.000000
s hg38.chr15_KI270850v1_alt     17859 39 +    430880 AGGAGTGGGAGAGCTTTCAGGGAACGGCAGAACCCTGAG
s panPan2.chr15              23043775 39 -  99763055 aggagcgggagagctttcagggaacggcggaaccctgag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2533659 39 +   2806052 AGGAGTGGGAGAGCTTTCAGGGAACGGCAGAACCCTGAG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22704922 39 - 121039945 aggagcgggagagctttcagggaagagcagaaccctgag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113300913 25 - 169600520 --------------tttcagggaatggcagaaccctgag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61589268 25 + 171882078 --------------tttcagggaacggcagaaccctgag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3894050 25 +   4820037 --------------tttcagggaatggcagaaccctgag
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9760849 25 +  10730278 --------------tttcagggaatggcagaaccctgag
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1317363 25 +  24206276 --------------tttcagggaatggcagaacgctgag
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3884261 25 +   4030761 --------------tttcagggaatggcagaaccctgag
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4008149 25 +   5013933 --------------tttcagggaatggcagaaccctgag
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              62186 39 -    125141 aggagtgggagagctttcaggggacagcaGAACTCTGGG
i saiBol1.JH378378          C 0 C 0
s dasNov3.JH579681             826550 35 +   1727078 ----gcaggcgagttttctgggaacagtaagatgccagg
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e panTro5.chr15              23346726 16 -  83230942 I

a score=1150551.000000
s hg38.chr15_KI270850v1_alt     17898 173 +    430880 CGAGGCTATGGGAGCCAAGG---CTGCGTAGGAAATAAGGCTGGAGGAGGCG-AGGGCCAGCCACAGTGTCCAGTGagaggcaggaagaaggggccactaagggaactgaaatacaaagctttctcc---tttttttcatgttctcttcacttgttctgatgttc---ttgttgttgttgttt
s panTro5.chr15              23346742 174 -  83230942 caaggctgcgggagccaagg---ctgcgtaggaaatgaagctggaggaggtg-agggccagCCACAAGGTCCGGTCagaggcaggaagaaggggccattaagggaactgaaatacgaagctttctcc--ttttttttcatgttctcttcatttgttctggtgttt---ttgttgttgttgttt
i panTro5.chr15             I 16 C 0
s panPan2.chr15              23043814 174 -  99763055 caaggctatgggagccaagg---ctgcgtaggaaatgaagctggaggaggtg-agggccagCCACAAGGTCCGGTCagaggcaggaagaaggggccattaagggaactgaaatacgaagctttctcc--ttttttttcatgttctcttcatttgttctggtgttt---ttgttgttgttgttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2533698 172 +   2806052 CGAGGCTATGGGAGCCAAGG---CTGCGTAGGAAATGAGGCTGGAGGAGGCG-AGGGCCAgcc-cagtgtccagtgagaggcaggaagaaggggccactaagggaactgaaatacgaagctttctcc---tttttttcatgttctcttcacttgttctgatgttc---ttgttgttgttgttt
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22704961 173 - 121039945 caaggctatgggagccaagg---ctgagtaggaaatgaggctggagaagGCG-AGGGCCGGCCACAGTGTCCAGTGagaggcaggaagaaggggccattaaaggaactgaaatacgaagttttctcc---tttttttcatgttctcttcatttgttctggtgttt---ttgttgtttttgttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113300938 173 - 169600520 cgaggctatgggagccaagg---ctgcgtagaaaatgaggctggaggaagcg-aggGTCGGCCACAAGGTCCAGTGagaggcaggaagaaggggccactaagggaactgaaatgtgaagctttctcc---tttttttcatgttctcttcatttgttctggtgttt---ttgttgttgttgttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61589293 176 + 171882078 caaggctatgggagccaagg---ctgcataggaaatgaggctggaggagacg-agggccggaCACAAGATCCAGTGaaaggcaggaagaaggggccactaagggaactgaaatacgaagctttctcc---attttttcatgttctcttcatttgttctggtgttcttgttgttgttgttgttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3894075 173 +   4820037 cgaggctatgggagccaagg---ctgtgtagaaaatgaggctggaggaagcg-agggtcggCCACAAGGTCCAGTGagaggcaggaagaaggggccactaagggaactgaaatgtgaagctttctcc---tttttttcatgttctcttcatttgttctggtgttt---ttgttgttgttgttt
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9760874 173 +  10730278 cgaggctatgggagccaagg---ctgtgtagaaaacgaggctggaggaagcg-agggtcggTCACAAGGTCCAGTGagaggcaggaagaaggggccactaagggaactgaaatgtgaagctttctcc---tttttttcatgttctcttcatttgttctggtgttt---ttgttgttgttgttt
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1317388 173 +  24206276 caaggctatgggagccaagg---ctgcataggaaatgaggctggaggaggca-agggccggaCACAAGATCCAGTGagaggcaggaagaaggggccactaagggaactgaaatacgaagctttctcc---attttttcatgttctcttcatttgttctggtgttc---ttgttgttgttgttt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3884286 173 +   4030761 caaggctatgggagccaagg---ctgtgtagaaaacgaggctggaggaagcg-agggtcggTCACAAGGTCCAGTGagaggcaggaagaaggggccactaagggaactgaaatgtgaagctttctcc---tttttttcatgttctcttcatttgttctggtgttt---ttgttgttgttgttt
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4008174 173 +   5013933 tgaggctatgggagccaagg---ctgcgtagaaaccgaggctggaggaagtg-aggGCCGGCCACAAGGTCCAGGGagaggcaggaagaaagggccactaagggaactgaaatgtgaagctttctcc---tttttttcatgttctcttcatttgttctggtgttt---ttgttgttgttgttt
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              62225 179 -    125141 GGAGGCTGTGGGAGCCGACGCTTCTGCATAGGAAACCAGGCCAAAGGAGGCG-AGGGCCGGCCCCACGGTCCAGTGCGaggcagagagaacgcgccactaagggaactcaaatacgaagctttctcctttttttttttgtattttcttaatttgctctgatggtt---tctttgttgttgttt
i saiBol1.JH378378          C 0 C 0
s dasNov3.JH579681             826585 153 +   1727078 tgaggctgcgcaaaccaaga---ctggatgggaaatgaagctgagggaggtgcaaggccTGTCATAGAATTt---------------------gctgttagaggtactgaattgtaaagctttttcc---tttctttcatgttctatcaatttatcatggtgttt---ttttgtttgctattt
i dasNov3.JH579681          C 0 I 3356
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I

a score=2036751.000000
s hg38.chr15_KI270850v1_alt     18071 370 +    430880 gtttgttttttgagacagagtctcactctattgcccaggctggagt-gccatg--gtgcaatctcggctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagactcctgagtagctggaactacaggcatgtgccacaatgcctggttaatttttatatttttagtagagacggggttttgtcatgttggccagactggtcttgaactcctga-cctcaggtgatctgcccacctcggcctcccagagtgctggaattacaggcgtgagc----caccatgcccagcctgttctgctggtt-----ttgttttgctttgttttgctttttaatttgctat-ttaatgttgttctaagtaagaaaaag--tttt
s panTro5.chr15              23346916 363 -  83230942 gtttgttttttgagacagagtctcgctctgttgcccaggctggaat-gcaatg--gcacgatcttgactcactgcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggcgtgtgccacaacggctggctactttttgtatttttagtagagacgagcttttgccatgttggccagactggtcttgaactcgtga-cctcaggtgatccgcccacctttgcctcccagagtgctggaattacaggcatgagcagtgcaccatgcccggcctgttctggtggtt-----ttttttt------tttt--tttcaaatttgctat-ttaa---tgttctaagtaagaaaaag--tttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23043988 364 -  99763055 gtttgttttttgagacagagtctcgctctgttgcccaggctggaat-gcaatg--gcacgatcttgactcactgcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggcgtgtgccacaacggctggctactttttgtatttttagtagagacaagcttttgccatgttggccagactggtcttgaacttgtga-cctcaggtgatccacccacctttgcctcccagagtgctggaattacaggcacgagcagtgcaccatgcccggcctgttctggtggtt-----ttttttt------tttt-ttttcaaatttgctat-ttaa---tgttctaagtaagaaaaag--tttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2533870 370 +   2806052 gtttgttttttgagacagagtctcgctctattgcccaggctggagt-gcgatg--gtgcaatctcggctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagactcctgagtagctggaactacaggcatgcgccacaatgcctggttaatttttatatttttagtagagacggggttttgccatgttggccagactggtcttgaactcctga-cctcaggtgatctgcccacctcggcctcccagagtgctggaattacaagcgtgagc----caccatgcccagcctgttctgctggtt-----ttgttttgctttgttttgctttttaatttgctat-ttaatgttgttctaagtaagaaaaag--tttt
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22705134 357 - 121039945 gtttgttttttgagacagagtctcgttctgttgcccaggctggagt-gcaatg--gcatgatcttggctcactgcaacctccacctcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggcgtgtgccacaatggctggctactttttgtgtttttagtagaaatgaggttttgccatgttggccagactggtcttgaactcgtga-cctcaggtgatccacccaccttggcctcccaaagtgctggaattacaggcatgagc----caccatgcccagcctgttctggtggtt-----ttttttt------tttt----tcaaatttgctat-ttaa---tattctaagtaagaaaaag--tttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113301111 359 - 169600520 gtttattttttgagacggagtttcgctctgtctcccaggctggagt-gcgatg--gtgtgatcttggctcactgcaacctctgcctcccaagttcaagagattctcctgcctcagcctcctgggtagctgggactacaagtgtgcaccacaatggctgactaatttttgtatttttagtagagataaggttttgccatgttggccagactggtcttgaactcctga-cctcagatgatccacccaccttggcctcctagagtgctggaattgcaggcatgagc----caccatgcctagcctattctggtg--------ttttttg------ttt--ttttttaatttgcgat-ttaatgttgttctaagtaagaaaaag--tttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61589469 369 + 171882078 gtttgtttgttgagacagaatctcactctgtctcccaggctggagt-gcaatg--gcacaatctgggctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagcctcctgagtgggtggaactacaggtgtgtgccacagtgcctggctaatttttatatttttagtagagacagggttttgccatgttggccagactggtcttgaactcctga-cctcaagtgatccacccacctcgacctcccagagtgctggaattacaggcatgagt----caccatgcccagactgttctggtgggttttgttgttttg------ttttgttttttaatttgctat-ttaatgttgttctaagtaagaaaaag--tttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3894248 359 +   4820037 gtttattttttgagacggagtttcgctctgtctcccaggctggagt-gcgatg--gtgtgatcttggctcactgcaacctctgcctcccaagttcaagagattctcctgcctcagcctcctgggtagctgggactacaagtgtgcaccacaatggctgactaatttttgtatttttagtagagataaggttttgccatgttggccagactggtcttgaactcctga-cctcagatgatccacccaccttggcctcctagagtgctggaattgcaggcatgagc----caccatgcctagcctattctggtg--------ttttttg------ttt--ttttttaatttgcgat-ttaatgttgttctaagtaagaaaaag--tttt
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9761047 360 +  10730278 gtttattttttgagacggagtctcgctctgtctcccaggcttgagtagcgatg--gtgtgatctt-gctcactgcaacctctgcctccagcgttc-agagattcttctgcctcagcctcctgggtagctgggactacaagtgtgcaccacaatggctgactaattttgtaatttttagtagggatataggtttgccatgttggccagactggtcttgaatccctgaccctcagatgatcca-ccaccttggcctcctagagtgctggaattgcaggcttgag-----caccatgcctagcctgttctggtg--------ttttttg------tttt-ttttttaatttgcgatgttaatg-tgttgctagtaagaaaagagttttt
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1317561 369 +  24206276 gtttgtttgttgagacagaatctcactctgtctcccaggctggagt-gcaatg--gcacaatctgggctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagcctcctgagtgggtgcaactacaggtgtgtgccacagtgcctggctaatttttatatttttagtagagacagggttttgccatgttggccagactggtcttgaactcctga-cctcaagtgatccacccacctcgacctcccagagtgctggaattacaggcatgagt----caccatgcccagactgttctggtgggttttgttgttttg------ttttgttttttaatttgctat-ttaatgttgttctaagtaagaaaaag--tttt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3884459 361 +   4030761 gtttattttttgagacggagtctcgctctgtctcccaggctggagt-gcgatg--gtgtgatcttggctcactgcaacctctgcctcccaggttcaagagattctcctgcctcagcctcctgggtagctgggactacaagtgtgcaccataatggctgactaatttttgtatttttagtagagataaggttttgccatgttggccagactggtcttgaactcctga-cctcagatgatccacccaccttggcctcctagagtgctggaattgcaggcatgagc----caccgtgcctagcctgctctggtg--------ttttttg------tttttttttttaatttgcgat-ttaatgttgttctaagtaagaaaaag--tttt
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4008347 362 +   5013933 gtttattttttgagacggagtctcgctctgtctcccaggctggagt-gcgatggtgtgtgatcctggctcactgcaacctctgcctcccaggttcaagcgatactcctgcctcagcctcctgggtagctgggactacaggtgtgcgccataatggctgactaatttttgtatttttagtagagatgaggtttggccacgttggccagactggtctttaactcctga-ctgcagatgatccacccaccctggcctcctagagtgctggaattgcaggcatgagc----caccatgcctagcctgttctggtg--------tttggtt------tttt-tttttaaatttgcgat-ttaatgttgttctaagtaagaaaaag--tttt
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              62404 351 -    125141 g----tgttttgggacagagtctcgctctgttgcccaggctggggt-gcc-tg--gcacaatctcggcccacggcaacctccacctcctgagttcaagcgattctcttgcctcagcctcctgagtagctgggactacaggcgtgcgtcacc-tgcctggctaatttttgtgtttttagtacagacagggttttgccatgttgcccaggctggtcttgaactcctga-gctcaggtgatctgcccacctcggccacccggagtgctgggattacaggtgtgagc----caccacacccagcctgttctagtg--------tttgttg------tttt-ttttttaatttgctat-ttaa---tgttctaagtaagaaaaag--gttt
i saiBol1.JH378378          C 0 I 9295
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I

a score=433880.000000
s hg38.chr15_KI270850v1_alt     18441 89 +    430880 acatttaa--attattagcataaattttaccattcatctttattttgtgcagtgccagttttaaatgcaaatgtaagagtacagttga-ccc
s panTro5.chr15              23347279 88 -  83230942 aaatttaa--attattggcataaattgtaccattcatctttattttgtgcagtgccagttttaaatgcaaatat--gagtatagctgacccc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23044352 88 -  99763055 aaatttaa--attattggcataaattgtaccattcatctttattttgtgcagtgccagttttaaatgcaaatat--gagtatagctgacccc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2534240 88 +   2806052 acatttaa--attattagcataaatt-taccattcatctttattttgtgcagtgccagttttaaatgcaaatgtaagagtacagttga-ccc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22705491 90 - 121039945 aaatttaa--attattggcataaattgtaccattcatctttattttgtgcagtgccagttttaaatgcaaatagaagagtatagctgacccc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113301470 89 - 169600520 aaatttaa--attattggcataaattgtaccattcatctttattttgttcagtgccagttttaaatgcaaatataagagtatagctgaccc-
i rheMac8.chr7              C 0 I 1
s macFas5.chr7               61589838 89 + 171882078 aaatttaa--attattggcataaattgtatcattcatctcttttttgtgcagtgccagttttaaatgcaaatataagagtatAGCTGACCC-
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011533v1      3894607 89 +   4820037 aaatttaa--attattggcataaattgtaccattcatctttattttgttcagtgccagttttaaatgcaaatataagagtatagctgaccc-
i macNem1.NW_012011533v1    C 0 I 1
s cerAty1.NW_011999477v1      9761407 90 +  10730278 aaatttagacattattggcat-aattgtaccattcatctttattttgttcaggcccagttttaaatcaatttaaatgagtatagctgacct-
i cerAty1.NW_011999477v1    C 0 I 1
s chlSab2.chr29               1317930 89 +  24206276 aaatttaa--attatttgcataaattgtatcattcatcttttttttgtgcagtgccagttttaaatgcaaatataagagtatAGCTGACCC-
i chlSab2.chr29             C 0 I 12
s manLeu1.NW_012102632v1      3884820 89 +   4030761 aaatttaa--attattggcataaattgtaccattcatctttattttgttcagtgccagttttaaatgcaaatataagagtatagctgaccc-
i manLeu1.NW_012102632v1    C 0 I 1
s colAng1.NW_012114844v1      4008709 89 +   5013933 aaatttaa--attactggcataaactgtaccattcatctttattttgtttagtgccagttttaaatgcaaatataagagtatagctgaccc-
i colAng1.NW_012114844v1    C 0 I 1
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=37015.000000
s hg38.chr15_KI270850v1_alt     18530 9 +    430880 agaacaact
s panTro5.chr15              23347367 9 -  83230942 agaacaact
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23044440 9 -  99763055 agaacaact
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2534328 9 +   2806052 agaacaact
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22705581 9 - 121039945 agaacaact
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113301560 9 - 169600520 tgaacaact
i rheMac8.chr7              I 1 C 0
s macFas5.chr7               61589928 9 + 171882078 TGAACAACT
i macFas5.chr7              I 1 I 2
s macNem1.NW_012011533v1      3894697 9 +   4820037 tgaacaact
i macNem1.NW_012011533v1    I 1 C 0
s cerAty1.NW_011999477v1      9761498 9 +  10730278 gaaacaacc
i cerAty1.NW_011999477v1    I 1 C 0
s manLeu1.NW_012102632v1      3884910 9 +   4030761 tgaacaact
i manLeu1.NW_012102632v1    I 1 C 0
s colAng1.NW_012114844v1      4008799 9 +   5013933 tgaacaact
i colAng1.NW_012114844v1    I 1 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e chlSab2.chr29               1318019 12 +  24206276 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=155339.000000
s hg38.chr15_KI270850v1_alt     18539 51 +    430880 tgggggtcaggggtgctgacctctgtgcaactgaaaatccat-gtataactt
s panTro5.chr15              23347376 51 -  83230942 cgggggacaggggtgctgactcctgtgcaattgaaaatccac-gtataactt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23044449 51 -  99763055 cgggggtcaggggtgctgactcctgtgcaattgaaaatccac-gtataactt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2534337 51 +   2806052 tgggggtcaggggtgctgacctctgtgcaactgaaaatccat-gtataactt
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22705590 51 - 121039945 caggggtcaggggtgctgactcctgtgcaattgaaaatccac-gtataactt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113301569 50 - 169600520 tgggggtc-ggggtgctgaccgctgtgcagttggaaatccat-gtatagctt
i rheMac8.chr7              C 0 I 1
s macNem1.NW_012011533v1      3894706 50 +   4820037 tgggggtc-ggggtgctgaccgctgtgcagttggaaatccat-gtagagctt
i macNem1.NW_012011533v1    C 0 I 1
s cerAty1.NW_011999477v1      9761507 47 +  10730278 ttggggt--gcggtgctgaccg-tgtgcaattg--aatccatggtatagctt
i cerAty1.NW_011999477v1    C 0 I 10
s manLeu1.NW_012102632v1      3884919 50 +   4030761 tgggggtc-ggggtgctgaccgctgtgcaattggaaatccat-gtatagctt
i manLeu1.NW_012102632v1    C 0 I 1
s colAng1.NW_012114844v1      4008808 50 +   5013933 tgggggtc-ggggtgctgaccgctgtgcaattggaaatccac-gtatagctt
i colAng1.NW_012114844v1    C 0 I 1
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=13064.000000
s hg38.chr15_KI270850v1_alt     18590 8 +    430880 t-gactcgc
s panTro5.chr15              23347427 9 -  83230942 tcgacttgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23044500 9 -  99763055 ttgactcgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2534388 8 +   2806052 t-gactcgc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22705641 9 - 121039945 tcaacttgc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113301620 8 - 169600520 -cgacttgc
i rheMac8.chr7              I 1 C 0
s macNem1.NW_012011533v1      3894757 8 +   4820037 -cgacttgc
i macNem1.NW_012011533v1    I 1 C 0
s manLeu1.NW_012102632v1      3884970 8 +   4030761 -ccactctc
i manLeu1.NW_012102632v1    I 1 C 0
s colAng1.NW_012114844v1      4008859 8 +   5013933 -cgactcgc
i colAng1.NW_012114844v1    I 1 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e chlSab2.chr29               1318019 12 +  24206276 I
e cerAty1.NW_011999477v1      9761554 10 +  10730278 I
e macFas5.chr7               61589937 2 + 171882078 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=3245526.000000
s hg38.chr15_KI270850v1_alt     18598 863 +    430880 ccaaaactactaatagcctactgttg-actggaagccttactgataacataaacagttaatacatattttgtatgttatatataatatatactatattct-tacaataaagtaagctagagaaaagcaaatgttattgaaatcataaggaa-gaggaaatacgttcactgttaattaagtggaagtggatcatcataaa---gatctccatcctcatcctcttcatgttgagtacgctgaggagggaggagaaaggcagggggtgatcttcttgtcttggggtggcagaggtgga-aaaaaatccacacataagtggacc--------------cc--gttgttcaaaagtcagctgtattaacttgtatgcagggtaaccaaaattacacaattcgtcttttgtagctgatatttactagatgatgagatagaataaaactatctcaattggtttgatctcactccttgatatgtgcacattctacccaggctctctaccttttcttaccgatgaagatggaaagactgaaaggagaaggaactatggggttctctttcctcccatgtcttcattttctgcatagcagttggctaatacaggggtgttaacatgggagagaaaggatgatggggcttcttggtcattgtcttctttctgcatttgaagtaa---tggttcaaatggaaaatgcagcctctgggcctgtcagtgc-cccctgtcccttactcagttgttgacataacatgtttatcttctaattgctttgagtctcaccgaactcctacacattatagattctga---catggaccaaagtaaatgttagatgcaagtggggcagcaaggaatggtggacacagacactgcctgtgtctcctctgttcaaaca
s panTro5.chr15              23347436 882 -  83230942 ccaaaactgctaatagcctactgttg-actggaagccttactgataacataaacagttaacacatattttgtatgttgtatataatatatactgtattct-tacaataaagtaagctagagaaaagcaaatgttattgaaatcataaggaa-gagaaaatatgttcactgctcattaagtggaagtggatattcattaagtggaagaggatcctcatcctcttcatgttgagtaggctgaggagggaggagaaaggcaggggatgatctca-------agggtggcagaggtgaa-aaaaaatccacatgtaagtggacctgtgcagttcaaatccatgttgttcaaaggtcagctctattaacttgtatgcagagtcactgaaattatacaattcgtcttttgtagctcatatttaccagaggatgaaatagaataaaattatctcaactggtttcatctcactccttggtatgtgcacattctacccaggctgtctaccttttcttaccaatgaggaaggaaagactgaaaggagaaggaactgtggggttctctttcctctcgtgtcttcattttctgcatagcgattggctaatacaggggtgttaacatgggtaagaaaggatgatggggctccttggtcattgtcttctttctgcatttgaagtaagtctggttcaaatggaaaatgcagcctctgggcctgtcagtgctctcctgtcccttactcagttgttgacataacatgtttaacatctaattgctttgagtctcaccgaactcctacacattataggttctgagctcatggaccaaagtaaatgtgagatgcaaatggggcagcaaggaatggtggacacagacattgcctgtgtctcctctgctcagata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23044509 882 -  99763055 ccaaaactgctaatagcctactgttg-actggaagccttactgataacataaacagttaacacatattttgtatgttgtatataatatatactgtattct-tacaataaagtaagctagagaaaagcaaatgttattgaaatcataaggaa-gagaaaatatgttcactgctcattaagtggaagtggatattcattaagtggaagaggatcctcatcctcttcatgttgagtaggctgaggagggaggagaaaggcaggggatgatctca-------agggtggcagaggtgaa-aaaaaatccacatgtaagtggacctgtgcagttcaaatccatgttgttcaaaggtcagctctattaacttgtatgcagagtcactgaaattatacaattcgtcttttgtagctcatatttaccagaggatgaaatagaataaaattatctcaactggtttcatctcactccttggtatgtgcacattctacccaggctgtctaccttttcttaccaatgaggaaggaaagactgaaaggagaaggaactgtggggttctctttcctctcgtgtcttcattttctgcatagcgattggctaatacaggggtgttaacatgggtaagaaaggatgatggggctccttggtcattgtcttctttctgcatttgaagtaagtctggttcaaatggaaaatgcagcctctgggcctgtcagtgctctcctgtcccttactcagttgttgacataacatgtttaacatctaattgctttgagtctcaccgaactcctacacattataggttctgagctcatggaccaaagtaaatgtgagatgcaaatggggcagcaaggaatggtggacacagacattgcctgtgtctcctctgctcagata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2534396 863 +   2806052 ccaaaactactaatagcctactgttg-actggaagccttactgataacataaacagttaatacatattttgtatgttatatataatatatactatattct-tacaataaagtaagctagagaaaagcaaatgttattgaaatcataaggaa-gaggaaatacgttcactgttaattaagtggaagtggatcatcataaa---gatctccatcctcatcctcttcaggttgagtacgctgaggagggaggagaaaggcagggagtgatcttcttgtcttggggtggcagaggtgga-aaaaaatccacacataagtggacc--------------cc--gttgttcaaaagtcagctgtattaacttgtatgcagggtaaccaaaattacacaattcgtcttttgtagctgatatttactagatgatgagatagaataaaactatctcaactggtttgatctcactccttgatatgtgcacattctacccaggctctctaccttttcttactgatgaagatggaaagactgaaaggagaaggaactatggggttctctttcctcccatgtcttcattttctgcatagcagttggctaatacaggggtgttaacatgggtaagagaggatgatggggcttcttggtcactgtcttctttctgcatttgaagtaa---tggttcaaatggaaaatgcagcctctgggcctgtcagtgc-cccctgtcccttactcagttgttgacataacatgtttatcttctaattgctttgagtctcaccgaactcctacacattatagattctga---catggaccaaagtaaatgttagatgcaagtggggcagcaaggaatggtggacacagacactgcctgtgtctcctctgttcagaca
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22705650 861 - 121039945 ccaaaactactaatagcctactgttg-actggaagccttactgataacataaacagttaatacctattttgtatgttatatataatatatactgtattct-tacaataaagtaagctagagagaagcaaatgttattgaaatcataaggaa-gagaaaatatgttcactgttcattaagtggaagagg---------------------atcctcatcctcttcatgttgagtaggctgaggagggaggagaaaggcaggggatgatctca-------ggggtggcagaggtgaa-aaaaaatccacatataagtggacctgtgcagttcaaatccatgttgttcaaaggtcagctgtattaacttgtatgcagagtcactgaaattatgcaattcgtcttttgtagctcatatttaccagaggatgagatagaataaaattatctcaactggtttcatctcactccttggtatgtgcacattctacccaggctgtctaccttttcttgccagtgaggaaggaaagactgaaaggagaaggaactatggggctctctttcttcccatgtcttcattttctgcatagcgattggctaatacaggggtgttaacatgggtaagaaaggatgatggggctccttggtcattgtcttctttctgcgtttgaagtaagtctggttcaaatggaaaatgcagcctctgggcctgtcagtgtccccctgtcccttactcagttgttgacataacatgtttatcatctgattgctttaagtctcaccgaactcctacacattatagattctgagctcatggaccaaagtaaatgtgagatgcaagtagggcagcaaggaacggtggacacagacattgcctgtgtctcctctgctcagata
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113301628 875 - 169600520 ccaaaactactaatagcctactgttg-actggaagccttactgataacataaacagctaatacatattttgtatgttatatataatatatactgtgttct-tacaataaagtaagctagagaaaagcaaatgttattggaatcataaggaa-gagaaaatatgttcactgctcattaagtggaagtggatcatcataag---ggtctc---cctcatcctcttcatgttgagtagcctgaagaggaaggagaaaggcaggggatgatctca-------ggggtggcagaggtggg-aaaaaatccacatataagtggacctgtgcagttcaaatccatgttgttcaaaggtcagttgtattaacatgtatgcagagtcaccaaaattacacagttcatcttttgtagctgatatttaccagatgatgagatagaataaaactatcgcaactggtttcatctcactccttgatatgggcacaatttacccaggctctctaccttttgttaccaatgaggaaggaaagactgaaaggagaaggaactatggggttctctttcctcccatgtcttcattttctgcatagcgattggctaatacaggggtgttaacatgagtaagaaaggacggtggggctccttggtcattgtcttctttctgcatttgaagtaagtctggttcaaatggaaaatgcagcctctgggcctgtcactgc-cccccatcccttactcagttgttgacataacatgtttatcatctgatagttttgagtctcactgaactcctacacattatcgattctgagctcatggaccaaagtaaatgttagatgcaagtagggcagcaaggaatgctggacacagacattacctttctctcctctgctcagaca
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3894765 876 +   4820037 ccaaaactactaatagcctactgttg-actggaagccttactgataacataaacagctaatacatattttgtatgttatatataatgtatactgtgttct-tacaataaagtaagctagagaaaagcaaatgttattggaatcataaggaa-gagaaaatatgttcactgctcattaagtggaagtggatcatcataag---ggtctc---cctcatcctcttcatgttgagtagcctgaagaggaaggagaaaggcaggggatgatctca-------ggggtggcagaggtgggaaaaaaatccacatataagtggacctgtgcagttcaaatccatgttgttcaaaggtcagttgtattaacatgtatgcagagtcaccaaaattacacagttcatcttttgtagctgatatttaccagatgatgagatagaataaaactatctcaactggtttcatctcactccttgatatgggcacaatttacccaggctctctaccttttgttaccaatgaggaaggaaagactgaaaggagaaggaactatggggttctctttcctcccatgtcttcattttctgcatagcgattggctaatacaggggtgttaacatgagtaagaaaggacggtggggctccttggtcattgtcttctttctgcatttgaagtaagtctggttcaaatggaaaatgcagcctctgggcctgtcactgc-cccccatcccttactcagttgttgacataacatgtttatcatctgatagttttgagtctcactgaactcctacacattatcgattctgagctcatggaccaaagtaaatgttagatgcaagtagggcagcaaggaatgctggacacagacattacctttctctcctctgctcagaca
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9761564 877 +  10730278 ccaaaactactaatagcctactgttgtactggaagccttactgataacacaaacagctaatacatattttgtatgttatatataatatatactgtgttctgtacaataaagtaagctagagaaaagcaaatgttattgg-atcataaggaaggagaaaatatgttcactgctcattaagtggaagtggatcatcataag---ggtctc---cctcatcctcttcatgttgagtagcctgaagaggaaggagaaaggcaggggatgatctca-------ggggtggcagaggtggg-aaaaaatccacatataagtggacctgtgcagttcaaatccatgttgttcaaaggtcagttgtattaacatgtatgcagagtcaccaaaattacacagttcatcttttgtagctgatatttaccagatgatgagatagaataaaactatctcaactggtttcatctcactccttgatatgggcacaatttacccaggctctctaccttttgttaccaatgaggaaggaaagactgaaaggagaaggaactatggggttctctttcctcccatgtcttcattttctgcatagcgattggctaatacaggggtgttaacatgagtaagaaaggacggtggggctccttggtcattgtcttctttctgcatttgaagtaagtctggttcaaatggaaaatgcagcctctgggcctgtcactgc-cccccatcccttactcagttgttgacataacatgtttatcatctgatagttttgagtctcactgaactcctacacattatagattctgagctcatggaccaaagtaaatgttagatgcaagtagggcagcaaggaatgctggacacagacattacctttctctcctctgctcaGACA
i cerAty1.NW_011999477v1    I 10 I 1898
s manLeu1.NW_012102632v1      3884978 875 +   4030761 ccaaaactactaatagcctactgttg-actggaagccttactgataacacaaacagctaatacatattttgtatgttatatataatatatactgtgttct-tacaataaagtaagctagagaaaagcaaatgttattggaatcataaggaa-gagaaaatatgttcactgctcattaagtggaagtggatcatcataag---ggtctc---cctcatcctcttcatgttgagtagcctgaagaggaaggagaaaggcaggggatgatctca-------ggggtggcagaggtggg-aaaaaatccacatataagtggacctgtgcagttcaaatccatgttgttcaaaggtcagttgtattaacatgtatgcagagtcaccaaaattacatagttcatcttttgtagctgatatttaccagatgatgagatagaataaaactatctcaactggtttcatctcactccttgatatgggcacaatttacccaggctctctaccttttgttaccaatgaggaaggaaagactgaaaggagaaggaactatggggttctctttcctcccatgtcttcattttctgcatagcgattggctaatacaggggtgttaacatgagtaagaaaggacggtggggctccttggtcattgtcttctttctgcatttgaagtaagtctggttcaagtggaaaatgcagcctctgggcctgtcactgc-cccccatcccttactcagttgttgacataacatgtttatcatctgatagttttgagtctcactgaactcctacgcattatagattctgagctcatggaccaaagtaaatgttagatgcaagtagggcagcaaggaatgctggacacagacattacttttctctcctctgctcagaca
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4008867 877 +   5013933 ccagagctactaatagcctactgttg-actggaagccttactgataacataaacagctaatacatattttgtatgttatatataatatatactgtgttct-tacaataaagtaagctagagaaaagcaaatgttattggaatcataaggaa-gagaaaatatgttcactgctcattaagtggaagtggatcatcataag---ggtctccatcctcatcctcttcatgttgagtagcctgaggagggaggagaaagataggggatgatctca-------ggggtgacagaggtggg-aaaaaatccacatataggtggacccgtgcagttcaaatccatgttgttcaaaggtcagttgtattaacttgtatgcagagtcaccaaaattacacagttcatcttttgtagctgatatttaccagattatgagatagaataaaactatctcaactggtttcatctcactccttgatatgggcacaatttacccaggctctctaccttttgttaccaatgaggaaggaaagactgaaaggagaaggaactatggggttctctttcctcccatgtcttcattttctgcatagcgattggctaatacaggggtgttaacatgagtaagaaaggacgatggggttccttggtcgttgtcttctttctgcatttgaagtaagtct-gttcaaatggaaaatgcagcctctgggcctgtcactgc-tccccgtcccttactcagttgttgacataacatgtttatcatctgatagttttgagtctcactgaactcctacacattatagattctgagctcatggaccaaagtaaatgttagatgcaagtagggcagcaaggaatgctggacccagacattacctttgtctcctctgctcagaca
i colAng1.NW_012114844v1    C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   2 + 171882078 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=105626.000000
s hg38.chr15_KI270850v1_alt     19461 34 +    430880 caggcttctttgtcccatcagaccttgcttacTg
s panTro5.chr15              23348318 34 -  83230942 caggctcttttgtcccatcagaccttgcttacTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23045391 34 -  99763055 caggctcttttgtcccatcagaccttgcttacTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2535259 34 +   2806052 caggcttctttgtcccatcagaccttgcttactg
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22706511 34 - 121039945 caggctcctttgtcccatcagaccgtgcttactg
i nomLeu3.chr6              C 0 I 360
s rheMac8.chr7              113302503 34 - 169600520 taggctcctttgtcccataagaccttgcttacTg
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3895641 34 +   4820037 taggctcctttgtcccataagaccttgcttacTg
i macNem1.NW_012011533v1    C 0 C 0
s manLeu1.NW_012102632v1      3885853 34 +   4030761 taggctcctttgtcccataagaccttgcttacTg
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4009744 34 +   5013933 caggctcctttgtcccatcagaccttgcttacTg
i colAng1.NW_012114844v1    C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e chlSab2.chr29               1318019 12 +  24206276 I
e cerAty1.NW_011999477v1      9762441 1898 +  10730278 I
e macFas5.chr7               61589937  2 + 171882078 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=87503.000000
s hg38.chr15_KI270850v1_alt     19495 35 +    430880 gccaggc-------gcagtggctcacgcctgtaatcccagca
s panTro5.chr15              23348352 42 -  83230942 GCCGGACCTTGCTTgtggtggcttatgcctgtaatcccagca
i panTro5.chr15             C 0 I 360
s panPan2.chr15              23045425 42 -  99763055 GCCGGACCTTGCTTgtggtggcttatgcctgtaatcctagca
i panPan2.chr15             C 0 I 364
s gorGor5.CYUI01000037v1      2535293 35 +   2806052 gccaggc-------gcagtggctcacgcctgtaatcccagca
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22706905 35 - 121039945 gctggac-------acagtggctcatgcctatgatcccattt
i nomLeu3.chr6              I 360 C 0
s rheMac8.chr7              113302537 35 - 169600520 gccgggc-------gtggtggctcacgcctgtaatcccagca
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3895675 35 +   4820037 gccgggc-------gtggtggctcacgcctgtaatcccagca
i macNem1.NW_012011533v1    C 0 C 0
s manLeu1.NW_012102632v1      3885887 35 +   4030761 gctgggt-------gtggtggctcacgcctgtaatcccagca
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4009778 35 +   5013933 gcccagc-------gtggtggctcacgcctgtaatcccagca
i colAng1.NW_012114844v1    C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e chlSab2.chr29               1318019 12 +  24206276 I
e cerAty1.NW_011999477v1      9762441 1898 +  10730278 I
e macFas5.chr7               61589937  2 + 171882078 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=25266.000000
s hg38.chr15_KI270850v1_alt     19530 13 +    430880 ctttgtgaggccg
s panTro5.chr15              23348754 13 -  83230942 ctttgggaggccg
i panTro5.chr15             I 360 C 0
s panPan2.chr15              23045831 13 -  99763055 ctttgggaggccg
i panPan2.chr15             I 364 C 0
s gorGor5.CYUI01000037v1      2535328 13 +   2806052 ctttgtgaggccg
i gorGor5.CYUI01000037v1    C 0 I 364
s nomLeu3.chr6               22706940 13 - 121039945 ctttgggaggccg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113302572 12 - 169600520 ctttgggagtcc-
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3895710 12 +   4820037 ctctgggagtcc-
i macNem1.NW_012011533v1    C 0 C 0
s manLeu1.NW_012102632v1      3885922 12 +   4030761 ctttgggagtcc-
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4009813 12 +   5013933 ctctgggagtcc-
i colAng1.NW_012114844v1    C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e chlSab2.chr29               1318019 12 +  24206276 I
e cerAty1.NW_011999477v1      9762441 1898 +  10730278 I
e macFas5.chr7               61589937  2 + 171882078 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=193471.000000
s hg38.chr15_KI270850v1_alt     19543 61 +    430880 aggtgggtggatcacctgaggtcaggagttttagaccagcctggccaacatggtgaaaccc
s panTro5.chr15              23348767 61 -  83230942 aggtgggtggatcatctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23045844 61 -  99763055 aggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2535705 61 +   2806052 aggtgggtggatcacctgaggtcaggagttttagaccagcctggccaacatggtgaaaccc
i gorGor5.CYUI01000037v1    I 364 C 0
s nomLeu3.chr6               22706953 61 - 121039945 aggtgggtggatcacctgagatcaggagttcaagaccagcctggccaacatgatgaaaccc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113302584 61 - 169600520 aggcaggtggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccc
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3895722 61 +   4820037 aggcaggtggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccc
i macNem1.NW_012011533v1    C 0 C 0
s manLeu1.NW_012102632v1      3885934 61 +   4030761 aggcaggtggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccc
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4009825 61 +   5013933 aggcaggtggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccc
i colAng1.NW_012114844v1    C 0 M 194
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e chlSab2.chr29               1318019 12 +  24206276 I
e cerAty1.NW_011999477v1      9762441 1898 +  10730278 I
e macFas5.chr7               61589937  2 + 171882078 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=399751.000000
s hg38.chr15_KI270850v1_alt     19604 175 +    430880 cctctctactaaaaatataaaaaattagctgggtgtggtggcggatgcctgtaatcccagctactcaggagcctgaggcaggagaattgcttgaacccgggaggtggaggctgcagtgagccaagattgagctgctgcactccagcctgggcaacaagagcaaaaaaa-ctctgtc
s panTro5.chr15              23348828 176 -  83230942 cctctctactaaaaatacaaaaaattagctgggcatggtggcagacgcctgtaatcccagctattcaggagcctgaggcaggagaattgcttgaacctgggaggtggaggctgcagtgagccaagatcacgccactgcactgcaacctgggcaacaagagcaaaaaaaactccgtc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23045905 176 -  99763055 cctctctactaaaaatacaaaaaattagctgggcatggtggcagacgcctgtaatcccagctattcaggagcctgaggcaggagaattgcttgaacctgggaggtggaggctgcagtgagccaagatcacgccactgcactccaacctgggcaacaagagcaaaaaaaactccgtc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2535766 175 +   2806052 cctctctactaaaaatataaaatattagctgggtgtggtggcggacgcctgtaatcccatctactcaggagcctgaggcaggagaattgcttgaacccgggaggtggaggctgcagtgagccaagattgagctgctgcactccagcctgggcaacaagagcaaaaata-ctctgtc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22707014 176 - 121039945 cctctttactaaaaatacaaaaaattagctgggcatggtggcagacgcctgtaatcccagctattcaagagcctgaggcaggagaattgcttgaaccccggaggtggaggctgcagtgagccaagatcgtgccactgcactccagcctgggcaacaagagcaaaaaaagctccctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113302645 175 - 169600520 cttctctactgaaaatacaaaaaattagctgggcatgggggcagatgcctgtaatcccatctgttcaggagcctgaggtaggagaattacttgaacccgggaggcggaggctgcagtgagccaagattgcaccactgcactccagcctggagaacaagagcgaaaaaa-ctctgcc
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3895783 175 +   4820037 cttctctactgaaaatacaaaaaattagctgggcatgggggcagatgcctgtaatcccatctgttcaggagcctgaggtaggagaattacttgaacccgggaggcggaggctgcagtgagccaagattgcaccactgcactccagcctggagaacaagagcgaaaaaa-ctctgcc
i macNem1.NW_012011533v1    C 0 C 0
s manLeu1.NW_012102632v1      3885995 175 +   4030761 cttctctactgaaaatacaaaaaattagctgggcatgagggcagatgcctgtaatcccagctgttcaggagcctgaggtaggagaattacttgaacccgggaggcggaggctgcagtgagccaagattgcaccactgcactccagcctggggaacaagagcgaaaaaa-ctctgtc
i manLeu1.NW_012102632v1    C 0 I 9240
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e colAng1.NW_012114844v1      4009886 194 +   5013933 M
e chlSab2.chr29               1318019  12 +  24206276 I
e cerAty1.NW_011999477v1      9762441 1898 +  10730278 I
e macFas5.chr7               61589937   2 + 171882078 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=9848.000000
s hg38.chr15_KI270850v1_alt     19779  8 +    430880 -tcaaaaaa-
s panTro5.chr15              23349004  8 -  83230942 -tcaaaaaa-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23046081  8 -  99763055 -tcaaaaaa-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2535941  8 +   2806052 -tcaaaaaa-
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22707190  8 - 121039945 -tcaaaaaa-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113302820 10 - 169600520 tccaaaaaaa
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3895958 10 +   4820037 tccaaaaaaa
i macNem1.NW_012011533v1    C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e colAng1.NW_012114844v1      4009886 194 +   5013933 M
e manLeu1.NW_012102632v1      3886170 9240 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e cerAty1.NW_011999477v1      9762441 1898 +  10730278 I
e macFas5.chr7               61589937  2 + 171882078 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=860360.000000
s hg38.chr15_KI270850v1_alt     19787 371 +    430880 aaaaaaaaagaatagaagaTGGCAACAGCAGAGCATTGCATACCTGCCCCACTTCTCCCCACCCTCCATTGCTTTTTGCTaggcaaac-accttcaaacttaacacttttagctctttcttgtgtttactttcctatttccgaaaagcactgctagactctcatttattgattttccagtttagatattatctagaaggttgggatttagcacccttgcatcacttcctatacgtacatttgtcccctcacctttcatcccaatttagtgttaacatacttggattaagtccatattctgcattttcattattatggctgtaaatcttgatggctgaactaagtgttgtaataagatggcatttcttttttt
s panTro5.chr15              23349012 370 -  83230942 aaaaataa-taatagaagatggcaacaggagagcattGTACACCTGccccacttctccccaccctccattgctttttcctaggcaacc-accttcaaacttaacactgttagctttttcttgtatttactttcctatttccaaaaagtattgctagactctcatttattgattttccagtttagatattatctggaagtttgggatttagcacccttgcatcacttcctgtacatacatttgtcccctcacttttcatcccaatttagtgttaacatatttggattaagtccatattccgcattttcattattatggctataaatcttgatgtctgaactaagtgttgtaataagatggcatttctttcttt
i panTro5.chr15             C 0 I 6
s panPan2.chr15              23046089 370 -  99763055 agtaataa-taatagaagaTGGCAACAGGAGAGCATTGTACACCTGccccacttctccccaccctccattgcttttttctaggcaacc-accttcaaacttaacactgttagctttttcttgtatttactttcctatttccaaaaagtattgctagactctcatttattgattttccagtttagatattatctggaagtttgggatttagcacccttgcatcacttcctgtacatacatttgtcccctcacttttcatcccaatttagtgttaacatatttggattaagtccatattccgcattttcattattatggctgtaaatcttgatgtctgaactaagtgttgtaataagatggcatttctttcttc
i panPan2.chr15             C 0 I 6
s gorGor5.CYUI01000037v1      2535949 367 +   2806052 aaaaa----gaatagaagatggcaacagcagagcattGTATACCTGccccacttctccccaccctccattgctttttgctaggcaaactaccttcaaacttaacacttttagctctttcttgtatttactttcctatttctgaaaagcactgctagactctcatttactgattttccagtttagatattatctagaaggttgggatttagcacccttgcatcacttcctatacatacatttgtcccctcacctttcatcccaatttagtgttaacatacttggattaagtccatattctgcattttcattattatggctgtaaatcttgatggctgaactaagtgttgtaataagatggcgtttctttttt-
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22707198 367 - 121039945 aaaaaaaa--aatagaagatggcaacagcagagcattGTACACCTGccccacttctccccaccctccattgcttttttctaggcaacc-accttcaaacttaacactgttagctttttcttgtatttactttcctatttccaaaaagtattgctagactctcatttattgattttccagtttagatattatctggaaggttgggatttagcacccttgcatcacttcctgtacatacatctgtcccctcacctttcatcccaatttagtgttaacatatttggattaagtccatattcctcattttcattattatggctataaatcttgatggctgaactaagtgttatcataagatggcatttctttct--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113302830 369 - 169600520 aaaaaaaaaaaaaGCAAGATTGCAACAGCAGAGCATCGTACACCTGccccacttctccccaccctccattgc--ttttcaaggcaacc-accttgaaacttaacacttttagctttttcttgtatttacttttctatttccaaaaagcattgctagactctcatttgttgattttccagtttagatattatctggaaggttgggatttagcacccttgcatcactttctgtacatacatttgtcccctcacctttcatcccaatttagtgttaacatatttggattaagtccatattccgcattttcattattacagccataaatcttgatggctgaactaagtgttgtaataagacggcatttctttcttt
i rheMac8.chr7              C 0 I 1347
s macNem1.NW_012011533v1      3895968 371 +   4820037 aaaaaaaaaaaaaacaagaTTGCAACAGCAGAGCATCGTACACCTGccccacttctccccaccctccattgcttttttctaggcaacc-accttgaaacttaacacttttagctttttcttgtatttacttttctatttccaaaaagcattgctagactctcatttgttgatttcccagtttagatattatctggaaggttgggatttagcacccttgcatcactttctgtacatacatttgtcccctcacctttcatcccaatttagtgttaacatatttggattaagtccatattccgcattttcattattacagctataaatcttgatggctgaactaagtgttgtaataagacggcatttctttcttt
i macNem1.NW_012011533v1    C 0 I 1459
s colAng1.NW_012114844v1      4010080 369 +   5013933 --AAAAAAAAAGAAGAAGATTGCAACAGCAGAGCATTGTACACCTGCCCCACTTCTCCCCACCCTCTATTGCTTTTTTCTaggcaacc-accttcaaacttaacacttttagctttttcttgtatttacttttctatttccaaaaagcattgctagactctcatgtattgattttccagtttagatattatctggaaggttgggatttagcaccattgcatcacttcctgtacatacatttgtctcctcacctttcatcccaatttagtgttaacatatttggattaagtccatattccacattttcattattatggctataaatcttgatggctgaactaagtgttgtaataagacggcatttctttcttt
i colAng1.NW_012114844v1    M 194 I 2
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e manLeu1.NW_012102632v1      3886170 9240 +   4030761 I
e chlSab2.chr29               1318019  12 +  24206276 I
e cerAty1.NW_011999477v1      9762441 1898 +  10730278 I
e macFas5.chr7               61589937   2 + 171882078 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=575580.000000
s hg38.chr15_KI270850v1_alt     20158 466 +    430880 -----taatttattttttattttgagagtgtctcattctgttgccctggctggagtacagtggtgcaatctcggctcatactgcagcctccacctcccaggttcaagctattctcatgcctcagcctcccaagtagctgggattacaggcacctgccaccac-gcccagcatatgtttgtatttttagtagaggcgggatttctgtgttggccaggttggtctcaaactcctgacctcaagtgattcgccaccttagcctcccaaagtgctaggattacaggcgtgagccactgtgccccatctagacggcatttctttgtaagaacaagctttt-atttgcttggttttcattgcttctccaggccttccagatcctttaacagttttataagatgtctcttaatccagttttcccaaaggtaatctctaccagataatccagccgttcccttctttcctggaccctcctcc
s panTro5.chr15              23349388 466 -  83230942 -----ttttttttttttttttttgagagagtctcactctgctgccccagctggagtacagtggtgcaatctcagctca--ctgcagcctctgcctcctgggttcaagtgattctcatgcctcagcctcccaagtagctgggattacaggcacctgccacccctgcccagctaatgtttgtatttttagtagaaacggggtttccatgttggccaggctggtctcgaactcctgacctcaagtgattcgccaccttggcctcccaaagtgctggggttacaggtgagagccactgcgccccatctagatggcatttctttttaagaacaagttttttatttgcttggttttcattgcttctccaggccttccagatcctttaatagttttataagatgtcttttaatccagttttcccaaaggtaatccctaccagataatccagcagttcccttctttcttggaccctcctcc
i panTro5.chr15             I 6 C 0
s panPan2.chr15              23046465 466 -  99763055 -----tttttttttttttttttgtagagagtctcactctgctgccccagctggagtacagtggtgcaatctcagctca--ctgcagcctctgcctcctgggttcaagtgattctcatgcctcagcctcccaagtagctgggattacaggcacctgccacccctgcccagctaatgtttgtatttttagtagaaacggggtttccatgttggccaggctggtctcgaactcctgacctcaagtgattcgccaccttggcctcccaaagtgctggggttacaggtgagagccaccgtgccccatctagatggcatttctttttaagaacaagttttttatttgcttggttttcattgcttctccaggccttccagatcctttaatagttttataagatgtcttttaatccagttttcccaaaggtaatccctaccagataatccagcagttcccttctttcttggaccctcctcc
i panPan2.chr15             I 6 C 0
s gorGor5.CYUI01000037v1      2536316 463 +   2806052 -----ttatttattttttattttgagagagtctcattctgttgccctggctggagtacagtggtgcaatctcggctca--ctgcagcctccacctcccaggttcaagctattctcatgcctctgcctcccaagtagctgggattagaggcacctgccaccac-gcccagcatatgtttgtatttttagtagaggcgggggttctgtgttggccaggttggtctcaaactcctgacctcaagtgattcgccaccttagcctcccaaagtgctaggattacaggcatgagccactgtgccccatctagatggcatttctttgtaagaacaagcttt--atttgcttggttttcattgcttctccaggccttccagatcctttaacagttttataagatgtctcttaatccagttttcccaaaggtaatctctaccagataatccagccgttcccttctttcttggaccctcctcc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22707565 466 - 121039945 -----ttctttttttttttttgagagggagtctcactatgttgccccagctggagtacagtggcgcaatctcggctca--ctgcagcctctgcctcccaggttcaagtgattctcatgcctcagcctcccaagtagctggggttacaggcacctgccacccctgcccagctagtgtttgtatttttagtagagatggggtttgcatgttggccaggctggtctcgaactcatgacctcaagtgattcaccaccttggcctcccaaagtgctgggattacaggtgagagccaccgcaccccatctagatggcatttctttttaagaacaagttttttatttgcttggttttcattgcttctccaggccttccagatcctttaatagttttaaaagttgtctcttaatccagttttcccaaaggtaatccctaccagataatccagcagttcccttctttcttggaccctcctcc
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012114844v1      4010451 471 +   5013933 ttctttcttttttttttttttgagagagagtctcactctgttgccctggctggagtacagtggtgcaatctcggctca--ctgcagtctctgcctcccaggttcaagcgattctcatgcctcagcctcccgagtagctggaattacaggcacctgctacccccacccagctaatgtttgtatttttagtagagacggggtttccatgttggccaggttggtctcaaactcctgacctcaagtgatttgccaccttggcctcccaaagtgctgggattacaggcatgagccaccgcgcccCATCCAGATGGCATTTCTTTTTAAGAACAAGTTTTTTAATTGCTTGGTTTTCGTTGCTTTTCCAGGCCTTCCAGCTCCTTTAACAGTTTTATAAGATGTCTCTTAATCCAGTTTTCCCAAAGGTAATCCCTACCATATAATCCAGCAGTTCCCTTCTTTCTTGGACCCTCCTCC
i colAng1.NW_012114844v1    I 2 I 1401
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e manLeu1.NW_012102632v1      3886170 9240 +   4030761 I
e chlSab2.chr29               1318019  12 +  24206276 I
e cerAty1.NW_011999477v1      9762441 1898 +  10730278 I
e macNem1.NW_012011533v1      3896339 1459 +   4820037 I
e macFas5.chr7               61589937   2 + 171882078 I
e rheMac8.chr7              113303199 1347 - 169600520 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=84438.000000
s hg38.chr15_KI270850v1_alt     20624  98 +    430880 caacttccctctgtcctccagtttagactggatgctttctatgcctgccccaaaatattcatggagggtc---ctgtttctcggatcccatgctacttttt
s panTro5.chr15              23349854 101 -  83230942 caacttccctgtgtcctccagtttagactggatgctttctagacctgccccaaaatattcatggaaggtcttcctgtttcttggatcccatgctacttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23046931 101 -  99763055 caacttccctgtgtcctccagtttagactggatgctttctagacctgccccaaaatattcatggaaggtcttcctgtttcttggatcccatgctacttttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2536779  98 +   2806052 caacttccctctgtcctccagtttaggctggatgctttctatgcctgccccaaaatattcatggagggtc---ctgtttctcggatcccatgctacttttt
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22708031 101 - 121039945 aaacttccctctgtcctccagtttagactggatgctttctaggcctgccccaaagtattcatggagggtcttcctgtttcttggatcccatgctacttttt
i nomLeu3.chr6              C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5769429 108 -  36342412 I
e colAng1.NW_012114844v1      4010922 1401 +   5013933 I
e manLeu1.NW_012102632v1      3886170 9240 +   4030761 I
e chlSab2.chr29               1318019  12 +  24206276 I
e cerAty1.NW_011999477v1      9762441 1898 +  10730278 I
e macNem1.NW_012011533v1      3896339 1459 +   4820037 I
e macFas5.chr7               61589937   2 + 171882078 I
e rheMac8.chr7              113303199 1347 - 169600520 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=587792.000000
s hg38.chr15_KI270850v1_alt     20722 537 +    430880 -tttatgggcaggtacctttttttttttt---aatttgttttggtggagcacatcctcaagtagctttctgagaaagagcgcatggaggtaaatggtttgcctgtctcaaagtgtctttattcttccctcacatctgattgatattttgatttgatatcaacttctgggttggaagtgactcttcctcagaatgttgaaggcatttttctgttgtcttctagtttccaacattgctctgaagaggtcccataccatttgga----------tttgaatgtgaccttttaaaaaatctggaagcttttaggactctt-------------------------------------------tctctttctctctctctttttggtgattttaaatttta--aatatatgccttggtctattttaatttgagggagcactcattggactgttttaatctagaaacttgtgcccttcagtgatt-gaactgtt-ggtgtattattgatttgataactt----tcttacattttctctttctggaacccttaatattcagctattctctcactttcttatttttaaacattttacacttcttcatct
s panTro5.chr15              23349955 538 -  83230942 -tt-atggggaggtacctttttttttttt-ttaatttgttttggtggagcacatcctcaagcagctttctgagaaagagtgcatggaggtaaatggtttgcctgtctcaaagtgtctttattcttccctcacatctgcttgatattttgatttgatatcaacctc-gggttggaagtgactcttcttcagaatgttgaaggcatttttccgttgtcttctagtttccaacattgctctgtagaggtcccataccattgtga----------tttgaatgtgaccttttaaaaaatctggaagcttttaggactctc-------------------------------------------tctctttctctctctctttttggtgattttaaatttta-cagtatatgccttggtctattttaatttgagggagcactcattggactgttttaatctagaaacttgtgcccttcagttctt-gaactgtt-gttgtattatttatttgacaactt----tcttacattttctctttctggaacccttaatattcagctattctctcactttcttatttttaaacattttacaatttttcatct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23047032 536 -  99763055 -ta-atggggaggtacctttttttttttt---aatttgttttggtggagcacatcctcaagcagctttctgagaaagagtgcatggaggtaaatggtttgcctgtctcaaagtgtctttattcttccctcacatctgcttgatattttgatttgatatcaacctc-gggttggaagtgactcttcttcaggatgttgaaggcatttttccgttgtcttctagtttccaacattgctctgtagaggtcccataccattgtga----------tttgaatgtgaccttttaaaaaatctggaagcttttaggactctc-------------------------------------------tctctttctctctctctttttggtgattttaaatttta-cagtatatgccttggtctattttaatttgagggagcactcattggactgttttaatctagaaacttgtgcccttcagttctt-gaactgtt-gttgtattatttatttgacaactt----tcttacattttctctttctggaacccttaatattcagctattctctcactttcttatttttaaacattttacaatttttcatct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2536877 527 +   2806052 -tttatggggaggtacctttttttttttt---aatttgttttggtggagcacatcctcaagtagctttctgagaaagagtgcatggaggtaaatggtttgcctgtctcaaactgtctttattcttccctcacatctgattgatattttgatttgatatcaacttctgggttggaagtgactcttcctcagaatgttgaaggcatttttctgttgtcttctagtttccaacattgctctgaagaggtcccataccatttgga----------tttgaatgtgaccttttaaaaaatctggaagcttttaggac-----------------------------------------------------tctctctctctttttggtgattttaaatttta--aatatatgccttggtctattttaatttgagggagcactcattggactgttttaatctagaaatttgtgcccttcagtgatt-gaactgtt-ggcatattattgatttgataactt----tcttacattttctctttctggaacccttaatattcagctattctctcactttcttatttttaaacattttacacttcttcatct
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22708132 534 - 121039945 -tt-atggggaggtacctttttttttttttttaatttgttttggtggagcacatcctcaagcagctttctgagaaagagtgcatggaggtaaatggtttgcctgtctcaaagtgtctttattcttccctcacatctgattgatattttgatttgctatcaacttctgggttggaagtgactcttcttcagaatgttgaaggcatttttctgttgtcttctagtttccaacattgctctgaagaggtcccataccattgtga----------tttgaatgtgaccttttaaaaaatctggaagcttttaggactctc-------------------------------------------------tgtctttctctttttggtgattttaaatttta-caatatatgccttggtctattttaatttgagggagcactcattggactgttttaatctagaaacttgtacccttcagttctt-gaactgtt-gttgtattatttatttgataactt----tctcacattttctctttctggaacccttaatattcagctattctctcactttcttatttttaaacattttacactttttcatct
i nomLeu3.chr6              C 0 C 0
s otoGar3.GL873530            5769537 585 -  36342412 TTT-TTGGGAGGGTAcctttttgattttt---tgtttgtttgggtggagcacatcctcaagttactttttgagaaagagtgcataggggcaattggtttgtctctctgaaagtgtctttattcttttctcacatctgattgatatttcgatttgagatcaaattctaggttagaatttacttctc-tcag-atgtcaaaggcgtttttccactgtctcctagtttccatcattgctatggaggagtcccatgccactctgattcccaagcttttgaatattacctttt-aacaatggagaaacctttaggattctctcactctttcatttgttctcttttccctccctccctccctccctcccttcctcccttccttccttctgattttaaatttcagaattatgtgctttggtctattttaatttggggggctgctaattgggcccttttaatctagaaactcatgtctttcagttcttggaaatgttctttgtattatttatttgatacttttctatcttctgttttctttttctggaacttttaatattcatctgttttctcacttcctt----------attttactctttttcatct
i otoGar3.GL873530          I 108 I 152
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e colAng1.NW_012114844v1      4010922 1401 +   5013933 I
e manLeu1.NW_012102632v1      3886170 9240 +   4030761 I
e chlSab2.chr29               1318019  12 +  24206276 I
e cerAty1.NW_011999477v1      9762441 1898 +  10730278 I
e macNem1.NW_012011533v1      3896339 1459 +   4820037 I
e macFas5.chr7               61589937   2 + 171882078 I
e rheMac8.chr7              113303199 1347 - 169600520 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=13293.000000
s hg38.chr15_KI270850v1_alt     21259 18 +    430880 ct-ttctcttttcttttct
s panTro5.chr15              23350493 18 -  83230942 ct-ttctattttcttttct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23047568 18 -  99763055 ct-ttctattttcttttct
i panPan2.chr15             C 0 I 11
s gorGor5.CYUI01000037v1      2537404 18 +   2806052 ct-ttctcttttcttttct
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22708666 19 - 121039945 ctattttcttttcttttct
i nomLeu3.chr6              C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5770122 152 -  36342412 I
e colAng1.NW_012114844v1      4010922 1401 +   5013933 I
e manLeu1.NW_012102632v1      3886170 9240 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e cerAty1.NW_011999477v1      9762441 1898 +  10730278 I
e macNem1.NW_012011533v1      3896339 1459 +   4820037 I
e macFas5.chr7               61589937  2 + 171882078 I
e rheMac8.chr7              113303199 1347 - 169600520 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=3732.000000
s hg38.chr15_KI270850v1_alt     21277 30 +    430880 atcctccctctctcccttctctctctttca
s gorGor5.CYUI01000037v1      2537422 30 +   2806052 atcttccctctctcccttctctctctttta
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22708685 20 - 121039945 atcctcccttcctccctacc----------
i nomLeu3.chr6              C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5770122 152 -  36342412 I
e panPan2.chr15              23047586 11 -  99763055 I
e colAng1.NW_012114844v1      4010922 1401 +   5013933 I
e manLeu1.NW_012102632v1      3886170 9240 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e cerAty1.NW_011999477v1      9762441 1898 +  10730278 I
e macNem1.NW_012011533v1      3896339 1459 +   4820037 I
e macFas5.chr7               61589937  2 + 171882078 I
e rheMac8.chr7              113303199 1347 - 169600520 I
e saiBol1.JH378378              62755 9295 -    125141 I
e panTro5.chr15              23350511  0 -  83230942 C

a score=26224.000000
s hg38.chr15_KI270850v1_alt     21307 65 +    430880 ctcccttcctctctccctccctccctccctccttccctcctccctccctccctccctccctccct
s panTro5.chr15              23350511 57 -  83230942 -----tttctatc---ctccctccctccctccctccctcccccctctccctctccctctctctct
i panTro5.chr15             C 0 I 17
s panPan2.chr15              23047597 54 -  99763055 --------ctccc---ctccctcccctccctcccccctcctccctctccctctccctctctctct
i panPan2.chr15             I 11 I 19
s gorGor5.CYUI01000037v1      2537452 53 +   2806052 -----ctcccgtc---ctctctccctccctccctccttccctcctccctccctccctccct----
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22708705 48 - 121039945 -----------tc---ccctctctctccctccctccctc---cctttctctctctctctctctca
i nomLeu3.chr6              C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5770122 152 -  36342412 I
e colAng1.NW_012114844v1      4010922 1401 +   5013933 I
e manLeu1.NW_012102632v1      3886170 9240 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e cerAty1.NW_011999477v1      9762441 1898 +  10730278 I
e macNem1.NW_012011533v1      3896339 1459 +   4820037 I
e macFas5.chr7               61589937  2 + 171882078 I
e rheMac8.chr7              113303199 1347 - 169600520 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=-283.000000
s hg38.chr15_KI270850v1_alt     21372 39 +    430880 tccttccttccttccgtccttccttccctccttccttcc
s gorGor5.CYUI01000037v1      2537505 23 +   2806052 ----------------tccttccttccttccctccttcc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22708753  3 - 121039945 ------------------------------------tct
i nomLeu3.chr6              C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5770122 152 -  36342412 I
e panPan2.chr15              23047651 19 -  99763055 I
e colAng1.NW_012114844v1      4010922 1401 +   5013933 I
e manLeu1.NW_012102632v1      3886170 9240 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e cerAty1.NW_011999477v1      9762441 1898 +  10730278 I
e macNem1.NW_012011533v1      3896339 1459 +   4820037 I
e macFas5.chr7               61589937  2 + 171882078 I
e rheMac8.chr7              113303199 1347 - 169600520 I
e saiBol1.JH378378              62755 9295 -    125141 I
e panTro5.chr15              23350568 17 -  83230942 I

a score=1560.000000
s hg38.chr15_KI270850v1_alt     21411 13 +    430880 --ttccttccttcct
s gorGor5.CYUI01000037v1      2537528 13 +   2806052 --ttccttccttcct
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22708756 11 - 121039945 --ttctttctttc--
i nomLeu3.chr6              C 0 C 0
s otoGar3.GL873530            5770274 13 -  36342412 tgtttttattttt--
i otoGar3.GL873530          I 152 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e panPan2.chr15              23047651 19 -  99763055 I
e colAng1.NW_012114844v1      4010922 1401 +   5013933 I
e manLeu1.NW_012102632v1      3886170 9240 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e cerAty1.NW_011999477v1      9762441 1898 +  10730278 I
e macNem1.NW_012011533v1      3896339 1459 +   4820037 I
e macFas5.chr7               61589937  2 + 171882078 I
e rheMac8.chr7              113303199 1347 - 169600520 I
e saiBol1.JH378378              62755 9295 -    125141 I
e panTro5.chr15              23350568 17 -  83230942 I

a score=1820.000000
s hg38.chr15_KI270850v1_alt     21424 2 +    430880 tt
s panTro5.chr15              23350585 2 -  83230942 tt
i panTro5.chr15             I 17 C 0
s gorGor5.CYUI01000037v1      2537541 2 +   2806052 tt
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22708767 2 - 121039945 tt
i nomLeu3.chr6              C 0 C 0
s otoGar3.GL873530            5770287 2 -  36342412 tt
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e panPan2.chr15              23047651 19 -  99763055 I
e colAng1.NW_012114844v1      4010922 1401 +   5013933 I
e manLeu1.NW_012102632v1      3886170 9240 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e cerAty1.NW_011999477v1      9762441 1898 +  10730278 I
e macNem1.NW_012011533v1      3896339 1459 +   4820037 I
e macFas5.chr7               61589937 2 + 171882078 I
e rheMac8.chr7              113303199 1347 - 169600520 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=4230.000000
s hg38.chr15_KI270850v1_alt     21426 3 +    430880 tga
s panTro5.chr15              23350587 3 -  83230942 tga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23047670 3 -  99763055 tga
i panPan2.chr15             I 19 C 0
s gorGor5.CYUI01000037v1      2537543 3 +   2806052 tga
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22708769 3 - 121039945 tga
i nomLeu3.chr6              C 0 C 0
s otoGar3.GL873530            5770289 3 -  36342412 tga
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e colAng1.NW_012114844v1      4010922 1401 +   5013933 I
e manLeu1.NW_012102632v1      3886170 9240 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e cerAty1.NW_011999477v1      9762441 1898 +  10730278 I
e macNem1.NW_012011533v1      3896339 1459 +   4820037 I
e macFas5.chr7               61589937 2 + 171882078 I
e rheMac8.chr7              113303199 1347 - 169600520 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=640392.000000
s hg38.chr15_KI270850v1_alt     21429 200 +    430880 ------gtctcgctttgttgcccaggctggagtgcagtgccacaatcatggctcactgcagcctcgagctcccaggcacaaatgatcctcctgcctcagcatcccaagtagctgggactacaggtgtatgccaccacactcagctaattttttaattttt------ctgtagagatggggttttgccatgctgcttaggctggacttgaact
s panTro5.chr15              23350590 206 -  83230942 ------gtctcgctttgttgcccaggctggagtgcagtgccacaatcatggctcactgcagccttgggctcccaggcacaaatgatcctcctgcctcagcatcccgagtagctgggacaacaagtgtgtgccaccacacccagctaattttttaatttttaattttttctagagatgaggttttgccgtgttgctcaggctgggcttgaact
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23047673 206 -  99763055 ------gtctcactttgttgcccaggctggggtgcagtgccacaatcatggctcactgcagccttgggctcccaggcacaaatgatcctcctgcctcagcatcccgagtagctgggacaacaagtgtgtgccaccacacccagctaattttttaatttttaattttttctagagatgaggttttgccgtgttgctcaggctgggcttgaact
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2537546 200 +   2806052 ------gtctcactttgttgcccaggctggagtgcagtgccacaatcatggctcactgcagcctcgagctcccaggcacaaatgatcctcctgcctcagcatcccaagtagctgggactacaggtgtatgccaccacactcagctaattttttaattttt------ctgtagagatggggttttgccatgttgcttaggctggacttgaact
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22708772 206 - 121039945 ------gtctcgctttgttgcccaggctggagtgcagtgccacaatcatgactcactgcagcctcgagctcccaggcgcaaatgatcctcttgcctcagcatcccgagtagctgggacaacaggtgtgtgccaccacacccagctaattttttaatttttaattttttctagagatggggttttgccatgttgctcaggctgggcttgaact
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113304546 192 - 169600520 ------gtcttgctttgttgcccaggctgcagtgcagtgccacaatcatggctcactgcagcctcgagctcccaggcacaaatgatcctcctgcctcagcattccaagtagctg--------------tgccaccacacccagctaattttttaatttttacttttttctagagatggggttttgccatgttgctcaggctgggcttgaact
i rheMac8.chr7              I 1347 C 0
s macNem1.NW_012011533v1      3897798 192 +   4820037 ------gtcttgctttgttgcccaggctgcagtgcagtgccacaatcatggctcactgcagcctcgagctcccaggcacaaatgatcctcctgcctcagcattccgagtagctg--------------tgccaccacacccagctaattttttaatttttacttttttctagagatggggttttgccatgttgctcaggctgggcttgaact
i macNem1.NW_012011533v1    I 1459 C 0
s cerAty1.NW_011999477v1      9764339 192 +  10730278 ------gtcttgctttgttgcccaggctgcagtgcagtgccacaatcatggctcactgcagcctcgagctcccaggcacaaatgatcctcctgcctcagcattccgagtagctg--------------tgccaccacacccagctaattttttaatttttacttttttctagagatggggttttgccatgttgctcaggctgggcttgaact
i cerAty1.NW_011999477v1    I 1898 C 0
s manLeu1.NW_012102632v1      3895410 192 +   4030761 ------gtcttgctttgttgcccaggctgcagtgcagtgccacaatcatggctcactgcagcctcgagctcccaggcacaaatgatcctcctgcctcagcattccgagtagctg--------------tgccaccacacccagctaattttttaatttttacttttttctagagatggggttttgccatgttgctcaggctgggcttgaact
i manLeu1.NW_012102632v1    I 9240 C 0
s otoGar3.GL873530            5770292 174 -  36342412 gacagagcctcaagctattgccctgggtcgagtgctgtggt---gtcacagctcacactaatcttcaactcttgggcttaggtgattctcttgcctcagcctcccaagtagctgggattataggtgcctgccacagtgcccagttgttgttt---------------------gacag--------------gcccaggctggatttgaacc
i otoGar3.GL873530          C 0 I 55
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e colAng1.NW_012114844v1      4010922 1401 +   5013933 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   2 + 171882078 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=586410.000000
s hg38.chr15_KI270850v1_alt     21629 204 +    430880 cctggaatcctctctcagtctcccatagttctgggattacaagcgttagccaccgtgcctagccatct----c-tattttctaggaggtatctga-----ctctactttacaatccctctattaaatttttgatttttttcattgtacttttaatttcttgaactttctcactcactaaatacacattgcgtgtctcatatctgaaatacttgg
s panTro5.chr15              23350796 211 -  83230942 tctggactcctccctcagcttcccaaagttctgggattacagtcgtgagccagcgtgcccagccacctgtttc-tattttctagggggcatctgatttatctatactttacaatccttctattaaaattttcatttttttcattgtacttttaatttcttaaactttctcattcactaaatacacattgagtgtctcat--ctgaaatacttag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23047879 211 -  99763055 tctggactcctccctcagcttcccaaagttctgggattacagtcgtgagccagcgtgcccagccacctgtttc-tattttctagggggcatctgatttatctatactttacaatccttctattaaaattttcatttttttcattgtacttttaatttcttaaactttctcattcactaaatacacattgagtgtctcat--ctgaaatacttag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2537746 209 +   2806052 cctggaatcctccctcagtctcccacagttctgggattacaagcgttagccaccgtgcctagccatct----c-tattttctaggaggtatctgattcatctttactttacaatccctctattaaatttttgatttttttcattgtacttttaatttcttgaactttctcactcactaaatacacattgcatgtctcatatctgaaatacttgg
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22708978 212 - 121039945 tctggactcctccctcagcctcccaaagttctgggattaccgtcgtgagccagcatgcccagccacctctttt-tattttctaggaggcatctgatttatctttactttataatctttctattaacattttcattttttt-attgtacttttaatttcttaaactttctcattcactaaatacacattgcgtgtctcatatctgaaatacttag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113304738 214 - 169600520 cctggactcctccctcagcctcctaaagttctgggattacaggcgtgagccagcgtgcctggccgtctctttcttgttttctaggaggcatctgatttatctttactttataatctttctatcaaatttttcatatttttcattgtacttttaatttcttaaactttctcattcactaaatacacattgtgtgtctcatatctgaaatacttgg
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3897990 214 +   4820037 cctggactcctccctcagcctcctaaagttctgggattacaggcgtgagccagcgtgcctggccgtctctttcttgttttctaggaggcatctgatttatctttactttataatctttctattaaatttttcatatttttcattgtacttttaatttcttaaactttctcattcactaaatacacattgtgtgtctcatatctgaaatacttgg
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9764531 209 +  10730278 cctggactcctccctcagcctcctaaagttctgggattacaggcgtgagccagcgtgcctggccgtctctttc-tgttttctaggaggcatctgatttatctttactttataa----tctattaaatttttcatttttttcattgtacttttaatttcttaaactttctcattcactaaatacacattgtgtgtctcatatctgaaatacttgg
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3895602 209 +   4030761 cctggactcctccctcagcctcctaaagttctgggattacaggcgtgagccagcgtgcctggctgtctctttc-tgttttctaggaggcatctgatttatctttactttataa----tctattaaatttttcatttttttcattgtacttttaatttcttaaactttctcattcactaaatacacattgtgtgtctcatatctgaaatacttgg
i manLeu1.NW_012102632v1    C 0 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e otoGar3.GL873530            5770466  55 -  36342412 I
e colAng1.NW_012114844v1      4010922 1401 +   5013933 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   2 + 171882078 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=181234.000000
s hg38.chr15_KI270850v1_alt     21833 66 +    430880 gaccagaagtgttttagattttggattttttttttttattattttggagtatttccattatactta
s panTro5.chr15              23351007 60 -  83230942 gaccagaagtgttttagattttggattttttttt------atttttgagtatttgcattatactta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23048090 60 -  99763055 gaccagaagtgttttagattttggattttttttt------atttttgagtatttgcattatactta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2537955 66 +   2806052 gaccagaagtgttttagattttggattttttttttaaattattttggagtatttccattatactta
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22709190 57 - 121039945 ggccagaagtgttttagattttggattttttttg---------tttgagtatttgcattatactta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113304952 66 - 169600520 gaccagaagtgttttagattttggatttttttttttttaaattttggagtatttgccttatattta
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3898204 66 +   4820037 gaccagaagtgttttagattttggatttttttttttttaaattttggagtatttgccttatattta
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9764740 64 +  10730278 gaccagaagtgttttagattttgga--tttttttttttaaattttggagtatttgccttatattta
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3895811 65 +   4030761 gaccagaagtgttttagattttggattttttttttttt-aattttggagtatttgccttatattta
i manLeu1.NW_012102632v1    C 0 C 0
s otoGar3.GL873530            5770521 54 -  36342412 gcccaaaggtgttttaggtttaggatttttt-------ggactttggaacatttgcattat-----
i otoGar3.GL873530          I 55 C 0
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e cebCap1.NW_016107334v1        75232 5022 +  11725426 I
e colAng1.NW_012114844v1      4010922 1401 +   5013933 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=474478.000000
s hg38.chr15_KI270850v1_alt     21899 106 +    430880 ccagttcagaatccccagtctgaaagtccaaaatctgaagtgctccaaagagaatttcctctgagcatcatgttagtgcccaaaagttttggattttggagcattt
s panTro5.chr15              23351067 106 -  83230942 gcagttcagaatccccagtctgaaagtccaaaatctgaagtgctccaaagagcatttcctctgagcatcatgttagtgcccaaaagttttggattttggagcattt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23048150 106 -  99763055 gcagttcagaatccccagtctgaaagtccaaaatctgaagtgctccaaagagcatttcctctgagcatcatgttagtgcccaaaagttttggattttggagcattt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2538021 106 +   2806052 ccagttcagaatccccagtctgaaagtccaaaatctgaagtgctccaaagagaatttcctctgagcatcatgttagtgcccaaaagttttggattttggagcattt
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22709247 106 - 121039945 gcagttcagaatccccagtctgaaagtccaaaatctgaagtgctccaaagatcatttcctctgagcgtcacgttagtgctcaaaagttttggattttggagcattt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113305018 106 - 169600520 gcagttcagaatccccagtctgaaagtccaaaatctgaagtgctccaaagagcatttcctctgagcatcatgttagtgttcaaaagttttggattttggagcattt
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3898270 106 +   4820037 gcagttcagaatccccagtctgaaagtccaaaatctgaagtgctccaaagagcatttcctctgagcatcatgttagtgttcaaaagttttggattttggagcattt
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9764804 106 +  10730278 gcagttcagaatccccagtctgaaagtccaaaatctgaagtgctccaaagagcatttcctctgagcatcatgttagtgctcaaaagttttgaattttggagcattt
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3895876 106 +   4030761 gcagttcagaatccccagtctgaaagtccaaaatctgaagtgctccaaagagcatttcctctgagcatcatgttagtgctcaaaagttttggattttggagcattt
i manLeu1.NW_012102632v1    C 0 C 0
s cebCap1.NW_016107334v1        80254 106 +  11725426 ccagttcagaattcccaatctgaaattccaaaatcttaagtgctccaaagagcatttcttctgagcatcatgttagtgctcaaaagtgttggattttggagcattt
i cebCap1.NW_016107334v1    I 5022 I 1
s otoGar3.GL873530            5770575 105 -  36342412 -cgattcaggataccaaatctgaaaatccaaaatctttaatgccttggtgaccatttcctctgagtgtcatgtcgacattgagaatgttttggttttggagcattt
i otoGar3.GL873530          C 0 I 8
e aotNan1.NW_018503093v1       670543 2845 +    730879 I
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e colAng1.NW_012114844v1      4010922 1401 +   5013933 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   2 + 171882078 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=123957.000000
s hg38.chr15_KI270850v1_alt     22005 27 +    430880 ggattttgggattggagatactcaacc
s panTro5.chr15              23351173 27 -  83230942 ggattttgagattggagatgctcaacc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23048256 27 -  99763055 ggattttgagattggagatgctcaacc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2538127 27 +   2806052 ggattttgggactggagatgctcaacc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22709353 27 - 121039945 ggattttgggattggagatgctcaacc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113305124 27 - 169600520 ggattttgggattagacgtgctcaacc
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3898376 27 +   4820037 ggattttgggattagacatgctcaacc
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9764910 27 +  10730278 gaattttgggattagacatgctcaacc
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3895982 27 +   4030761 ggattttgggattagacatgctcaacc
i manLeu1.NW_012102632v1    C 0 C 0
s cebCap1.NW_016107334v1        80361 27 +  11725426 ggatttttggattggagatgctcaccc
i cebCap1.NW_016107334v1    I 1 C 0
s aotNan1.NW_018503093v1       673388 27 +    730879 GGATTTTTGGTTTGGAGATGCTCAACT
i aotNan1.NW_018503093v1    I 2845 C 0
s otoGar3.GL873530            5770688 27 -  36342412 acattttcagatttgagatggcagacc
i otoGar3.GL873530          I 8 C 0
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e colAng1.NW_012114844v1      4010922 1401 +   5013933 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=798669.000000
s hg38.chr15_KI270850v1_alt     22032 142 +    430880 tgtgcacc---ttttgatcctattcctgttttgtgggtacagtgtgttctcttatctctgtgaggttattacttacacggatttgacttttttcttctgttccctgaaatgtttttatttcctttgg---------gttattt-aaaa-------aaatata--
s panTro5.chr15              23351200 142 -  83230942 tgtgcacc---ttttgatcctattcttgtttcatgggtacagtatgttctcttatctctgtgaggttattacttacatggatttgacttttttcttctgttccctgaaatgtttttctttcctttgg---------gttattt-ttta-------aaaaata--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23048283 141 -  99763055 tgtgcacc---ttttgatcctattcttgtttcatgggtacagtatgttctcttatctctgtgaggttattacttacatggatttgacttttttcttctgttccctgaaatgtttttctttcctttgg---------gttattt--tta-------aaaaata--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2538154 142 +   2806052 tgtgcacc---ttttgatcgtattcctgttttgtgggtacagtgtgttctcttatctctgtgaggttattacttacacggatttgacttttttcttctgttccctgaaatgtttttatttcctttgg---------gttattt-aaaa-------aaatata--
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22709380 143 - 121039945 tgtgcacc---ttttgatcctattcttgtttcatgggtacagtatgttctcttatctctgtgaggttattacttacatagatttgacttttttcttctgttccctgaaatgtttttctttcctttgg---------gttatttttaaa-------aaatata--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113305151 142 - 169600520 tgtgcacc---ttttgatcctattcttgtttcatgggtacagtaggttctcttatctctgtgaggttattacttacatggatttgacttttttcttctgttccctgaaatgtttttctttcctttgg---------gttattt-tttt-------aaaaata--
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3898403 142 +   4820037 tgtgcacc---ttttgatcctattcttgtttcatgggtacagtaggttctcttatctctgtgaggttattacttacatggatttgacttttttcttctgttccctgaaatgtttttctttcctttgg---------gttattt-tttt-------aaaaata--
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9764937 142 +  10730278 tgtgcacc---ttttgatcctattcttgttttatgggtacagtaggttctcttatctctgtgaggttattacttacatggatttgacttttttcttctgttccctgaaatgtttttctttcctttgg---------gttattt-ttta-------aaaaata--
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3896009 142 +   4030761 tgtgcacc---ttttgatcctattcttgtttcatgggtacagtaggttctcttatctctgtgaggttattacttacatggatttgacttttttcttctgttccctgaaatgtttttctttcctttgg---------gttattt-ttta-------aaaaata--
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4012323 142 +   5013933 tgtgcacc---ttttgatcctattcttgtttcatgggtacagtaggttctcttatctctgtgaggttattacttacatggatttgacttttttcttctgttccctgaaatgtttttctttcctttgg---------gttattt-tttt-------aaaaata--
i colAng1.NW_012114844v1    I 1401 C 0
s cebCap1.NW_016107334v1        80388 140 +  11725426 tgTACAcc---tttttatttcattcttgttccatgggtgcagcatgttctcgtatctttgtgaggttactgctcacatggattttactttttacttctgttccctaaattttttttcttttctttgg---------gttatta-aa---------aaatata--
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       673415 149 +    730879 TATACAcc---tttttatttaattcttgtttcatgggtacagtatggtctcttatctttgtgaggttactacttacatagattttacttttaacttctgttccctaaattttttttcttttctttgg---------gttattg-aatatatatatatatata--
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5770715 148 -  36342412 tgTACTCCTTTTTTTAATCCTATTCTTCTTTCACTGGTACAGTA-----TTTTATCTTTGTGAAGTTATTACTTAAATGGGTTTTATTTTTTTCTTC---ACCTTGAAATATTTTTGTTTCCTTTGGAttattattattattt-ttta-------agagacaga
i otoGar3.GL873530          C 0 I 140
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   2 + 171882078 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=1932123.000000
s hg38.chr15_KI270850v1_alt     22174 344 +    430880 tttgtttca---------------------------------------------------------------------------------tgttaacagttttctt-------------ggccaggcatggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatctcttgaggtcaggagttcgagaccagcctgaccaacatggtgaaatcctgtctctactaaaaa-aaa--tac-aaaaaattagctgggcatggtggctcatgcctgtaattgcagctactcaggaggctgaggcaggagaatcgcttgaacccgggagggaaaggctgcagtgaaccaagattctgccactgtactccagcctgggcaaaagagagagactctgtctca-------------------------aag-------------aaaa--gttttcttaaaatgcattggctgta
s panTro5.chr15              23351342 346 -  83230942 tttgtttca---------------------------------------------------------------------------------tgttaatagtttcctt-------------ggctaggcgtggtggctcacgcctgtaatcccagcactttgggaggctaaggcgggcagatctcttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctgtactaaaaa-aaaaatac-aaaaaattagccaggcctggtggctggtgcctgtaatcgcagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggcagaggctgcagtgaaccgagattgcgtcactgtactccagcctgggcaacagagagagactctgtctca-------------------------aaa-------------aaaa--gttttcttaaaatgcattggctgta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23048424 345 -  99763055 tttgtttca---------------------------------------------------------------------------------tgttaatagtttcctt-------------ggccaggcgtggtggctcacgcctgtaatcccagcactttgggaggctaaggcgggcagatctcttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctgtactaaaaa-aaa-atac-aaaaaattagccaggcctggtggctggtgcctgtaatcgcagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggcagaggctgcagtgaaccgagattgcgtcactgtactccagcctgggcaacagagagagactctgtctca-------------------------aaa-------------aaaa--gttttcttaaaatgcattggctgta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2538296 344 +   2806052 tttgtttca---------------------------------------------------------------------------------tgttaacagttttctt-------------ggccaggcatggtggctcacgcctgtaattccagcactttgggaggccaaggcaggcagatctcttgaggtcaggagttcaagaccagcctggccaacatggtgaaatcctgtctctactaaaaa-aaa--tac-aaaaaattagctgggcatggtggctcatgcctgtaattgcagctactcaggaggctgaggcaggagaatcgcttgaacccgggagggaaaggctgcagtgaaccaagattccgccactgtactccagcctgggcaaaagagagagactctgtctca-------------------------aag-------------aaaa--gttttcttaaaatgcattggctgta
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22709523 346 - 121039945 tttgtttca---------------------------------------------------------------------------------tgttaacagtttcctt-------------ggccaggcacagtggctcacacctgtaatccccgcactttgggaggccgaggcaggcagatatcttgaggtcagtagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaa-aaagatac-aaaaagttagccaggcatggtggctggtgcctgtaatcgcagttactcaggaggctgaggcaggagaatcgcttgaacccgggaggccgaggctgcagtgaaccgagattgtgacactgtactccagcctgggcaacagagagagactctgtctca-------------------------aaa-------------aaaa--gttttcttaaaatgcattggctgta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113305293 341 - 169600520 tttgtttca---------------------------------------------------------------------------------tgttaacagttttctt-------------ggccaggcacagtggctcacgcctgtaattccagcactttgggaggctgaggcaggcagatctcttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaa-aaa--tat-aaaaaattagccgggcacggtggctggtgcctgtaatcgcagctactcaggaggctgaggcaggagaatcgcttgaacccgggagacggaggctgcagtgaactgagattgcaccactgtactccagccttggcaacagagagagactctctc----------------------------aaa-------------aaaa--gttttcttaaaatgcattgtctgtt
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3898545 341 +   4820037 tttgtttca---------------------------------------------------------------------------------tgttaacagttttctt-------------ggccaggcacagtggctcacgcctgtaattccagcactttgggaggctgaggcaggcagatctcttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaa-aaa--tat-aaaaaattagccgggcacggtggctggtgcctgtaatcgcagctactcaggaggctgaggcaggagaatcgcttgaacccgggagacggaggctgcagtgaactgagattgcaccactgtactccagccttggcaacagagagagactctctc----------------------------aaa-------------aaaa--gttttcttaaaatgcattgtctgta
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9765079 336 +  10730278 tttgtttca---------------------------------------------------------------------------------tgttaacagttttctt-------------ggccaggcacagtggctcacgcctgtaattccagcactttgggaggccgaggcaggcagatctct--agatcaggagatggagagcatcctggctaacacggtgaaaccccgtc---actaaaaa-ata--tat-aaaaaattagccgggcacggtggctggtgcctgtaatcgcagctactcaggaggctgaggcaggagaatcgcttgaacccaggagacggaggctgcagtgaactgagattgcaccactgtactccagccttggcaacagagagagactctctc----------------------------aaa-------------aaaa--gttttcttaaaatgcattgtctgta
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3896151 341 +   4030761 tttgtttca---------------------------------------------------------------------------------tgttaacagttttctt-------------ggccaggcacagtggctcacgcctgtaattccagcactttggaaggccgaggcaggcagatctcttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaa-aaa--tat-aaaaaattagccgggcacggtggctggtgcctgtaatcgcagctactcaggaggctgaggcaggaggatcgcttgaacccaggagacggaggctgcagtgaactgagattgcaccactgtactccagccttggcaacagagagagactctctc----------------------------aaa-------------aaaa--gttttcttaaaatgcattgtctgta
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4012465 342 +   5013933 tttgtttca---------------------------------------------------------------------------------tgttaacagttttctt-------------ggccaggcacagtggctcacgcctgtaattccagcactttgggaggccgaggcaggcagatctcttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaac-aaa--tat-aaaaaattagccgggcacggtgactggtgcctgtaatcgcagctactcaggaggctgaggcaggagaattgcttgaacccgggagacggaggctgcagtg-actgagattgcaccactgtactccaaccttggcaacagagagagactctcaa----------------------------aaa-------------aaaaagggtttcttaaaatgcattgtctgta
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107334v1        80528 344 +  11725426 tttgtttca---------------------------------------------------------------------------------tgtcaacagttttctt-------------cactgagcatggtggctcacgcctgtaatcctagcactttgggaggccaaggcaggtggatatcttgaggtaaggagttcgagaccagcctagccaacatggtgaaaccatgtctctact-aaaa-aaa--tac-aaaaaattagccaggcttggtgggtggtgtctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctaggaggcagaggctgcagtgaaccaagatcacaccactgcactcccccctgggcaacagagcgagactgtgtctca------------------------taaa-------------aaag--gttctcttaaaatgtgttggctgta
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       673564 346 +    730879 tttgtttca---------------------------------------------------------------------------------tgtcaacagttttctt-------------ggttgggcgcgatggctcacgcctgtaatcccagcactttgggaggccaaggcaggtggatctcttgaggtcaggagttcgaggccagcctggccaacatggtgaaaccatgtctctactaaaaa-aaa--tacaaaaaaattagccgggcttggtagctggtgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggcagaggctgcagtgaaccaagatcgtaccactgcactccagcctgggcaacagagcgagactctgtctca------------------------taaa-------------aaat--gttctcttaaaatgtgtgggctgta
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5771003 475 -  36342412 tttgttgcagtttggccggggccaggttcgaacctgctaccctcggtatgtggggccggtaccgtactcactgagccacagacgctgcccTGTGGATTATTTTTTTAAAAAGCATTCAGggccaggtgtggtagctcatgcctataatcctagtactctgggaggccaaggcaagaggatcctttgagctcagtagttccagaccagcctgagcaaga--gtgagactccatctctactaaaaataaa--aaa-tcaaaattagtagggtgttgtggtggatgcctgtaatcccagctactcaggaggctgagacaggaggatcgcttgaccccaagatttagaggttgctgtgagcaaggctgatgccatggcactctgcccagggcagtagagtgagGGTCTATTCCCCACAATAATACAATGAGATGAAATTAAAtttctttcatgttaaag--tttttcttaaagtgtcttggctgta
i otoGar3.GL873530          I 140 C 0
e mm10.chr9                  90180776 1229 + 124595110 I
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   2 + 171882078 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=190677.000000
s hg38.chr15_KI270850v1_alt     22518 32 +    430880 tttcatatatagca-----aggagatgcagagacact
s panTro5.chr15              23351688 32 -  83230942 tttcatatatagca-----aggagatgcagagatact
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23048769 32 -  99763055 tttcatatatagca-----aggagatgcagagatact
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2538640 32 +   2806052 tttcatatatagca-----aggagatgtagagacact
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22709869 32 - 121039945 tttcatgtatagca-----aggagatgcagagatact
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113305634 32 - 169600520 tttaatatatagca-----aggagatgcagagatact
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3898886 32 +   4820037 tttaatatatagca-----aggagatgcagagatact
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9765415 32 +  10730278 tttcatatatagca-----aggagatgcagagatact
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3896492 32 +   4030761 tttaatatatagca-----aggagatgcagagatact
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4012807 30 +   5013933 tttcctatatagca-----aggagatgc--agatact
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107334v1        80872 32 +  11725426 tttcatatatagca-----aggagatgcagagacact
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       673910 32 +    730879 tttcatatatagca-----aggagatgcagagacact
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5771478 30 -  36342412 tttgtcatgtgaga-----aggagacg--gagatgcc
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90182005 37 + 124595110 TTTCACATACAGAATGTAGAGGGGAGAAACAGCTTCC
i mm10.chr9                 I 1229 C 0
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e canFam3.chr3               58199355 5254 +  91889043 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=1822868.000000
s hg38.chr15_KI270850v1_alt     22550 311 +    430880 aattgggcagtttgtggacttgggcaggacttttccaag----tcactgctgaaggactggttcagatgggg-cta-ttttggggag----------------------atcctctaatgtc-actatctgaggtcatttttctgagtgattcagtttcctgagag--gaatcctctcgacttttcctgggagagt----gt-atgtctg-----gctgcagcattccagcatccaagtgggaaaggggcttggcgtgtttcttacccttcaatgtgtagacttttgctt-gtccccttttctctgt-aggtccttctgccttgggccttcatgtgtgtccaccgttcctgggc
s panTro5.chr15              23351720 293 -  83230942 cattgtgcagtttgtggacttgggcaggacttttccaag----tctctgctgaaggactggtttgcatgggggcta-ttttggggag----------------------atcttctaatttc-agtatctgaggtcatttttctgagtgattcagttttccgagag--gaatcctctaggcttttcctgggagagt----gt-atgtctg-----gctgcagcattcc-------------------ggcttggcgtgtttcttacccttcaatgtgtagacttttgctt-gtccccttttctctgt-aggtccttctgccttgggccttcatgtatgtctaccattcctgggc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23048801 293 -  99763055 cattgtgcagtttgtggacttgggcaggacttttccaag----tctctgctgaaggactggtttgcatggggacta-ttttggggag----------------------atcctctaatttc-agtatctgaggtcatttttctgagtgattcagttttccgagag--gaatcctctaggcttttcctgggagagt----gt-atgtctg-----gctgcagcattcc-------------------ggcttggcgtgtttcttacccttcaatgtgtagacttttgctt-gtccccttttctctgt-aggtccttctgccttgggccttcatgtatgtctaccattcctgggc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2538672 311 +   2806052 aattgggcagtttgtggacttgggcaggacttttccaag----tcactgctgaaggactggttcagatgggg-cta-ttttggggag----------------------atcctctaatgtc-actatctgaggtcatttttctgagtgattcagtttcctgagag--gaatcctctcgacttttcctgggagagt----gt-atgtctg-----gctgcagcattccagcatccaagtgggaaaggggcttggcgtgtttcttacccttcaatgtgtagacttttgctt-gtccccttttctctgt-aggtccttctgccttgggccttcatgtatgtccaccgttcctgggc
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22709901 309 - 121039945 cattgtgcagtttgtggacttgggcaggacttttccagg----tcactgctgaaggactggtttggacgggg-cta-tttcgggaag----------------------atcctctaatgtc-agtatctgaggtcatttttctgagtgattcagtttcccgaaag--ggatcttcttgacttttcctgggaga------gt-atgtctg-----gctgcagcattccagcatccaagtggggaaggggcgtggcatgtttcttacccttcaatgtgtagacttttgctt-gtcccctttcctctgt-aggtccttctgccttgggccttcatgtatgtccagcattcctgggc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113305666 313 - 169600520 aattgttcagtttgtggacttgggcaggacttttccaag----tcactgctgaaggactggttcggataggg-ctg-ttttggggag----------------------atcctctaatgtc-agtatctgaggtcatttttctgagtgattcagtttccccagagaagaatcctctagacttttcctgggagagt----gt-atgtctg-----gctgcagcattccggcatccaagtgaggaaggggcttggcgtgtttcttacccttcgatgtgtagacttttgctt-gttctcttttctctgt-aggtccttctgccttgggccttcatctatgcccagtgttgctgggc
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3898918 313 +   4820037 aattgttcagtttgtggacttgggcaggacttttccaag----tcactgctgaaggactggttcggataggg-ctg-ttttggggag----------------------atcctctaatgtc-agtatctgaggtcatttttctgagtgattcagtttccccagagaagaatcctctagacttttcctgggagagt----gt-atgtctg-----gctgcagcattccggcatccaagtgaggaaggggcttggcgtgtttcttacccttcgatgtgtagacttttgctt-gttctcttttctctgt-aggtccttctgccttgggccttcatctatgcccagtgttgctgggc
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9765447 311 +  10730278 aattgttcagtttgtggacttgggcaggacttttccaag----tcactgctgaaggactggttcggataggg-ctg-ttttggggag----------------------atcctctaatgtc-agtatctgaggtcatttttctgagtgattcagttgcccaagcg--gaatcctctagacttttcctgggagagt----gt-atgtctg-----gctgcagcattccggcatccaagtgaggaaggggcttggcgtgtttcttacccttcgacgtgtagactttcgctt-gtcctcttttctctgt-aggtccttctgccttgggccttcatctatgcccagtgttgctgggc
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3896524 311 +   4030761 aattgttcagtttgtggacttgggcaggacttttccaag----tcactgctgaaggactggtttggataggg-ctg-ttttggggag----------------------atcctctaatgtc-agtatctgaggtcatttctctgagtgattcagttgcccaagcg--gaatcctctagacttttcctgggagagt----gt-atgtctg-----gctgcagcattccggcatccaagtgaggaaggggcttggcgtgtttcttacccttcgatgtgtagacttttgctt-gttctcttttctctgt-aggtccttctgccttgggccttcatctatgcccagtgttgctgggc
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4012837 311 +   5013933 aactgttcagtttgtggacttgggcaggacttttccaag----tcactgcagaaggactggtttggataggg-ctg-ttttggggag----------------------atactctaatgtc-agtatctgaggtcatttttctgagtgattcagttgcccaagcg--gaatcttctagacttttcctgggagagt----gt-atgtctg-----gctgcagcattccggcatccaagtgaggaaggggcttggcatgtttcttaccctttgatgtgtagacttttgctt-gttctcttttctctgt-aggtccttctgccttggaccttcatctatgcccagtgttgctgggc
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107334v1        80904 323 +  11725426 cattgggcagtttgtggacttgggcaggacttttccaagtcactcactgctgaaggactggttcggaggggg-ctgttttttgggag----------------------ttcttgcaatgtcaattatctgaagtcatttttctgagtgactcagtttccccagagcggaatcctctagacttttcctgggagagtgtatgt-ctgtctg-----gctgcagcataccagcatccaagtggggaaggggcttggcgtgtttcttacccttcaatgtgtagacttttgctt-gttcccttttctctgt-aggtccgtccgccttgggccttaatctatgtccagcgttcctgggc
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       673942 309 +    730879 aactgggcagtttgtggacttgggcgggacttttccaag----tcactgctgaaggactggttcggatgggg-ctgttttttgggag----------------------atcctccagtgtcaagtatctgaagtcatttttctgagtgactcagtttccccagagcggaatcccctagacttttcctag----------ac-ttgtctg-----gctgcagcattccagcatccaagtgcggaaggggcttggcgtgtttcttacccttcaatgtatggacttttgctt-gtccccttttctctgt-aggtccttctgccttgagccttcatctatgtccagcgttcctgggc
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5771508 273 -  36342412 ag-tgggaggcctatggacgtgggcaggacc------------tcactgctgaggaactggttgggataggg-ctgtttttggggag----------------------atcctaaaatgtc-----tctggggtcatttttctaagtgagtcagtttccccagggaggactcctctagtcttttcctgggacagt----gc-aggtgtg-----gccgtagcatttaggcatccaaacgggtagg------ggcaggtgtcccgac--------------cttttgc----------tttctctgtaaggtccctctgccttgggctgtcatctgtgtctgatgttcctaggc
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90182042 333 + 124595110 TATTGGGAGATCTATAG-CTTTGGCTATGCCTTTCCGAG----TCACCGATGAAGAGCTCACTGGGGTGCGT-CTG-TTCTGTGGGGGGAGGGGGGGGGAAGTGAGAGCATCCTTAAATGCT-AGAAACTGACTTCATGTTTCTGAGTGACTCAGGATACCCAGAGAAGACGCTAC------TCTCCTGGGAGAGT----GTCACATCTGTCACATCTGCTGTTGTCTGTCATATCTGATAGGGCAGGGCTTGCTG-GTGACCCAGTCTTCACTGTGCAAAGGGACACTTAGTGTCCCTTTCTCTGT-AGGATCCTCCACTATGGGCCCT-GCCTGTGACTGGGCTTCCTAGGC
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58204609 248 +  91889043 AGTTGGGAGGCTTGTGAA-----GCAGG-------CAGG----CTTTTGGGGAGGGGCT--------------GTA-TCTCTGGGAG----------------------GTGTTCAGATATC---TGCACGAGGCTCATTTCTGGTGTGGTTCCATTTCCCCAGAGAGGAACTCTCCTG--TTGTCCTGGGAG-GT----GT------TA-----G-----GCATTATGGCACCTGCGTGTGGAAGCGGCTTGGC--GATCTCCACCCTTCCTTGTGGAGACTTACATTT-TTCCC---TTCTCTAT-AGATCCTTCCG---TAGGTCTTCG-----------------GGGGC
i canFam3.chr3              I 5254 C 0
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   2 + 171882078 I
e saiBol1.JH378378              62755 9295 -    125141 I

a score=3299151.000000
s hg38.chr15_KI270850v1_alt     22861 451 +    430880 cagagcctcctggttcaccctctccaggaagtgatccctggccctctgctgggt-ggcaggtggccgtcacttggctactcagggttggggaggggctctagggtctgatcggttcttacagactttcagc---cctactgtcttcagccctcctggccgtaaggccctgaggagtccctgcaaactcagttcctgagccttttcgggcttctgcttctgggtggttcccccctgcaggaatctgactctcagctttcatcactct-agcaagtcagctactgcctggc-catctgcttcccagcttccagaatcttgttgacatccttcattactcatcatcac-----------------ccctt--------------atggatttatgccttgtttatttcctctactgtcattatagtggagtcttggaaggaagca-gcgataaatctgtctgctcaatgtgccatgtttttcta-----gaagtcCA
s panTro5.chr15              23352013 451 -  83230942 cagagcctcctggttcaccctccccagggagtgatcctcggccctctgctgggt-ggcaggtggccgtcacttggctactcagggttggggaggggatctagggtctgatcggttcttacagactttcagc---cctactctcttcagccctcctggccctaaggccctgaggggtccctggaaactccattcctgagcctttctgggcctctccttctgggtggttcctccctgcaggcagttggctctcagcttttatcactct-accaagtcagctactgcctggc-catctgcttcccagcttccagaatcttgttgacatccttcattacccatcatcac-----------------ccctt--------------atggatttatgccttgtttatttcctctactgtcatcatagtggaattttggaagggagca-gcgataaatctgtctgctcaacgtgccatgtttttcta-----gaagtcCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23049094 451 -  99763055 cagagcctcctggttcaccctccccagggagtgatcctcggccctctgctgggt-ggcaggtggccgtcacttggctactcagggttggggaggggatctagggtctgatcggttcttacagactttcagc---cctactgtcttcagccctcctggccctaaggccctgaggggtccctggaaactccattcctgagcctttctgggcctctccttctgggtggttcctccctgcgggcagttggctctcagcttttatcactct-accaagtcagctactgcctggc-catctgcttcccagcttccagaatcttgttgacatccttcattacccatcatcac-----------------ccctt--------------atggatttatgccttgtttatttcctctactgtcatcatagtggaattttggaagggagca-gcgataaatctgtctgctcaacgtgccatgtttttcta-----gaagtcCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2538983 451 +   2806052 cagagcctcctggttcaccctctccagggagtgatccctggccctctgctgggt-ggcaggtggccgtcacttggctactcagggttggggaggggatctagggtctgatcagttcttacagactttcagc---cctactgtcttcagccctcctggctgtaaggccctgaggagttcctgcaaactcagttcctgagcctttccgggcttctgcttctgcgtggttcccccctgcaggaatctgactctcagctttcatcactct-agcaagtcagctactgcctggc-catctgcttcccagcttccagaatcttgttgacatccttcattactcatcatcac-----------------ccctt--------------atggatttatgccttgtttatttcctctactgtcattatagtggagtcttggaaggaagca-gcaataaatctgtctgctcaatgtgccatgtttttcta-----gaagtcCA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22710210 451 - 121039945 cagagcctcctggttcaccctctccagggaatgatccccagccctctgctgggt-ggcaggtggccgtcacttggctactcagggttggggagggaatctagggtctgatcagttcttacagactttcagc---cccactgtcttcagccctcctggccctaaggccctgaggggtccctggaaactccattcctgagcctttccgggcttctccttctgggtggttcctccctgcaggcatctgactctcagctttcatcactct-accaagtcagctactgcctggc-catctgcttcccagcttccagaatcttgttgacatccttcattacccatcatcag-----------------ccgtt--------------atggatttatgccttgtttatttcctctactgtcatcatagtggagtcttggaagggagca-tcgataaatctgtctgctcaatgtgccatgtttttcta-----gaagtcCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113305979 451 - 169600520 cagagcctcttggttcacccttgccagggagtgatccccggccctctgctgggt-ggcaggtgacagtcacttggctactcagggtttaggaggggatctagggtctgatcagttcttacagactttcagc---cctactgtcttcagccctcctggccctaagtccctgaggggtccctggcaactcaattcctcagcctttctgggcttctgcttctgagtggttcctccctgcaggcatttggctctcagttttcatcactct-accaagtcagctactgcccggc-catctgcttcccagcttccagaatcttgttaacatccctcattacccatcagcac-----------------ctctt--------------atggatttatgctgtggtcatttcctctactgtcatcagagtggagttttggaagggagca-tcgataaatctgtctgctcaatgtgccatgtttttcta-----gaagtcCA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3899231 451 +   4820037 cagagcctcttggttcacccttgccaggaagtgatccccggccctctgctgggt-ggcaggtgacagtcacttggctactcagggtttaggaggggatctagggtctgatcagttcttacagactttcagc---cctactgtcttcagccctcctggccctaagtccctgaggggtccctggcaactcaattcctcagcctttctgggcttctgcttctgagtggttcctccctgcaggcatttggctctcagttttcatcactct-accaagtcagctactgcccggc-catctgcttcccagcttccagaatcttgttaacatccctcattacccatcagcac-----------------ctctt--------------atggatttatgctgtggtcatttcctctactgtcatcagagtggagttttggaagggagca-tcgataaatctgtctgctcaatgtgccatgtttttcta-----gaagtcCA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9765758 451 +  10730278 cagagcctcttggttcacccttgccagggagtgatccccggccctctgttgggt-ggcaggtgacagtcacttggctactcagggttggggaggggatctagggtctgatcagtttttacagactttcagc---cctactgtcttcagccctcctggccctaagtccctgaggggtccctggcaactcaattcctgagcctttctgggcttctgcttctgagtggttcctccctgcagacatttgactctcagctttcatcactct-accaagtcagctactgcccggc-catctgcttcccagcttccagaatcttgttaacatccctcattacccatcagcac-----------------ctctt--------------atggatttatgctgtggtcatttcctctactgtcatcagagtggagttttggaagggagca-tcgataaatctgtctgctcaatgtgccatgtttttcta-----gaagtcCA
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3896835 451 +   4030761 cagagcctcttggttcacccttgccagggagtgatccccggccctctgctgggt-ggcaggtgacagtcacttggctacacagggtttgggaggggatctagggtctgatcagttcttacagactttcagc---cctactgtcttcagccctcctggtcctaagtccctgaggggtccctggcaactcaattcctgagcctttctgggcttctgcttctgagtggttcctccctgcagacatttgactctcagctttcatcactct-accaagtcagctactgcccggc-catctgcttcccagcttccagaatcttgttaacatccctcattacccatcagcac-----------------ctctt--------------atggatttatgctgtggtcatttcctctactgtcatcagagtggagttttggaagggagca-tcgataaatctgtctgctcaatgtgccatgtttttcta-----gaagtcCA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4013148 451 +   5013933 cagagcctcttggttcaccctctccagggagtgatccccggccctctgctgggt-ggcaggtgacagtcacttggctactcagggttggggaggggatctagggtctgatcagttcttacagactttcagc---cctactgtcttcagccctcctggccctaaggccctgaggggtccctggcaactcaattcctgagcctttctgggcttctgcttctgagtggttcctccctgcaggcatttgactctcagctttcatcactct-accaagtcagctactggccggc-catctgcttcccagcttccagaatcttgttgacatccctcattacccatcagcac-----------------ctctt--------------atggatttatgctgtggtcatttcctctactgtcatcagagtggagttttggaagggagca-gcgataaatctgtctactcaatgtgccatgtttttcta-----gaagtcCA
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              72050 447 -    125141 cagaacctattggttcaccctctccatg----ggtccctggccccctgctgggtggggaggtggcagtcacttggctactcagggttggggaggggatctagggtctgattagttcttacagactttcagc---cctactgtcttcagttctgctgggcctcaggccttgaggggtccctggaaactcaattcctgagcctttccagggttctgcttctggacggttcctccctgcaggcacttggctctcagctttcatcgctct-accaagtcagctactgcatggc-catctgctttccagcttccacagtctttttgacatcctccgttttccgtcatcag-----------------ccctt--------------atggatttatgccttgtttatttcctctgctgtcatcacagtggagttttggaggg-agca-gtggtaaatctgtctgctcagtgtgccatgtgtttcta-----gaagtcCA
i saiBol1.JH378378          I 9295 C 0
s cebCap1.NW_016107334v1        81227 442 +  11725426 cagaacc---tggttcaccctctccatg----ggtccccggccccctgctgggtggggaggtggcagtcacttggctactcagggttggggaggggatctagggtctgatcagttcttactgacgttcagc---cctactgtcttcacttctgctgggcctcaggccttaaggggtccctgaaaactcaattcctgagcctttccagggttctgtttctggatggttcctccctgcaggcatttggctctcagctttaatcgctct-accaagtcagctactgcgtggc-catctgctttccagcttc--cagtctttttgacaaccttcattttccatcatcac-----------------ccctt--------------atggatttatgccttgtttatttcctctgctgtcatcacagtggagttttggaagg-agca-gggataaatctgtctgctcaatgtgccatgtgtttcta-----gaagtcCA
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       674251 447 +    730879 cagaatctgatggttcaccccgtccgtg----gatccccggccccctgctgggtggggaggtggcagtcacttggctactcagggttggggaggggatctagggtctgaccagttcttacagactttcagc---cctactgtcttcatttctcctggtcctcaggccttgaggagtccctggagactcaattcctgagcctttccagggttctgcttctggatggttcctccctgcaggcacttggctctcagctttcatcgctct-accaagtcagctactgcgtggc-catctgctttccagcttccacaatccttttgacatccttcattttccatcatcac-----------------ccctt--------------acggatttatgccttgtttatttcctctgctgtcatcgcaggggagtattggaagg-agca-gtgataaatctgtctgctcaatgtgccatgtgtttcta-----gaagtcCA
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5771781 453 -  36342412 cagatccttctggttca-gctttccagagagtgacctttggca------------gggaggtggcagttgcctggccactcagggttgtggaagggaccctgagtccggctggttctcacagactttcagccagccttctgtttctagtcctcctggcccccaggaccct-gggtttcctgggactctaattcctgaacctttcctggttt---gctctgggtggcttctccctgcaggca-------cttagctgtcatcactcc-accaagtcagctactgctcccctcccctgctttccagcctccagaactttgttgacatctctcacttgctataatcacttctcccttaccctttgccctt--------------gtggatttgtgcctacttta-ttcctccgtgttcactgtagtgggggtttggaagggagca-gagataaatctgtttgctcattgtgccatgtttTTCTAAGAATAAAGTTCA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90182375 344 + 124595110 ---------------------------------------------------------TAGAT-------------CTACCTGGGTCTTTGGAG------------------------TAGAAACCTTCAGA-------------TTAGCTCTGCTGGCCCCAGATAGATAAGGTGCTCTGAGA--------TCCCGGGTC-TTCCAGTCCTCtgcttctccatcatttctcctcacaggc-tttagctctcagcttctgtcacttt-cccaagtcagctaccgattggc-catctgctttccagcttctagaattccgtcgacatctctcatctgctgtcatcgcttccctcttctc-----ctctt--------ctccgggtggagttatgttttgttta-ttcctcaaatgtcagggtagaaaagcttt-------agca-gagaCAG----GCCTGCTCAGTGTGCTGTGGTTCTCTG-----CAAGCCCA
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58204857 419 +  91889043 CAGATCCTTTT-GTTCACCCTCTTCAGG-AGTGACCCTTGGCTCTCTGCAGGCA-GGGAGGTGGTCATCACCTGGCCACACAGAAC-GGGGAGCGAATGTGGGAGCTGATG-----------------------CCTCTGGTCCTCCATCCCACTGGAGCCCTGGCCTCCATGGCTCCCTGGGACTGGAG--CCTGAGCCTTTCTCAGGCTCTGCTTCTGGGTGGTTCTTCCATGTAGG-ACATGGCTttcagctctcgctgctctgaccaggtttgccactggttgac-catctgcttcccagctcctggggttttgctgac--tttttgtctgccatcacctc-----------------cccctggttccttatccctgaggacttatgccctgttcttttcct-----gtcatcctagggggattctg------agcaggTGGGGAGTTCATCTGCC--ATGGGTC------TTCTA-----GAAGTCC-
i canFam3.chr3              C 0 C 0
e calJac3.chr10             113734223 886 - 132174527 I
e dasNov3.JH579681             826738 3356 +   1727078 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   2 + 171882078 I

a score=623296.000000
s hg38.chr15_KI270850v1_alt     23312 75 +    430880 CT---CACTGTGGGGCTTAAGCAGGGATGTGACCAGGTCCATTAGGGATGTAA----GAGCAAGGATACTGGCCTCC-AGTGG
s panTro5.chr15              23352464 75 -  83230942 CT---CACTGTGGGGCTTAAGCAGGGATGTGACCAGGTCCATTAGGGATGTAA----GAGCAAGGATGCTGGCCTCC-AGTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23049545 75 -  99763055 CT---CACTGTGGGGCTTAAGCAGGGATGTGACCAGGTCCATTAGGGATGTAA----GAGCAAGGATGCTGGCCTCC-AGTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2539434 75 +   2806052 CT---CACTGTGGGGTTTAAGCAGGGATGTGACCAGGTCCATTAGGGATGTAA----GAGCAAGGATACTGGCCTCC-AGTGG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22710661 75 - 121039945 CT---CACTGTGGGGTTTAATCAGGGATGTGACCAGGTCCATTAGGGATGTAA----GAGCAAGAATGCTGGCCTCC-AGTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113306430 75 - 169600520 CT---CACTGTGGGGTTTAAGCAGGGATGTGACCAGGTCCATTAGGGATGTAA----GAGCAAGGATGCTGGCCTCC-AGTGG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3899682 75 +   4820037 CT---CACTGTGGGGTTTAAGCAGGGATGTGACCAGGTCCATTAGGGATGTAA----GAGCAAGGATGCTGGCCTCC-AGTGG
i macNem1.NW_012011533v1    C 0 I 5801
s cerAty1.NW_011999477v1      9766209 75 +  10730278 CT---CACTGTGGGGTTTAAGCAGGGATGTGACCAGGCCCATTAGGGATGTAA----GAGCAAGGATGCTGGCCTCC-AGTGG
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3897286 75 +   4030761 CT---CACTGTGGGGTTTAAGCAGGGATGTGACCAGGTCCATTAGGGATATAA----GAGCAAGAATGCTGGCCTCC-AGTGG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4013599 75 +   5013933 CT---CACTGTGGGGTTTAAGCAGGGATGTGACCAGGTCCATTAGGGATGTTA----GAGCAAGGATGCTGGCCTCC-AGTGG
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              72497 73 -    125141 CT---CACTGTGGGGTTTAAGCAGGGATGTGATCAGGTCCATTA-GGATGTAA----GAGCAGGGATGCCGGCCT-C-AATGG
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        81669 73 +  11725426 CT---CACTGTGGGGTTTAAGCAGGGATGTGATCAGGTCCATTA-GGATGTAA----GAGCAGGGATGCCGGCCT-C-AATGG
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       674698 73 +    730879 CT---CACTCTGGGGTTTAAGCAGGGATGTGATCAGGTCCATTA-GGATGTAA----GAGCAGGGATGCCGACCT-C-AATGG
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5772234 79 -  36342412 CT---CACTGTGCAGTTTAAGTAGGGACA-GACCAGGTCCATTAGGGACAGAAGAGCGAGCAAGGATTCTGGCCCCCTGGTGG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90182719 74 + 124595110 CTCCGCACGGTGG----TAGCCTGATGCGTGCCTAGGGCCTCCGGGCTAGTGA----GAGCATGGGCACCGGTCTCC-CCTGG
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58205276 72 +  91889043 CT---TACTGCGGGGTATAAGTGGGGACACGGGTGCGT-CACTGTGGGTGT------GAGCAGCAGCTCTGGCCTCT-GACAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             830094 73 +   1727078 cc---CACTGTAAGGTTTAAGCAGGAAAGT-CCCAAGTTCATTATGGATGTAA----GAGCAAGGGCTCTGGCCT-C-TATGG
i dasNov3.JH579681          I 3356 C 0
e calJac3.chr10             113734223 886 - 132174527 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I

a score=118211.000000
s hg38.chr15_KI270850v1_alt     23387 17 +    430880 AAGAGGGATTACTGGGG
s panTro5.chr15              23352539 17 -  83230942 AAGAGGCAGTACTGGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23049620 17 -  99763055 AAGAGGGAGTACTGGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2539509 17 +   2806052 AAGAGGGATTACTGGGG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22710736 17 - 121039945 AAGAGGGATTACTGGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113306505 17 - 169600520 AGGAGGGATTACTGGGG
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9766284 17 +  10730278 TAGAGGGATTACTGGGG
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3897361 17 +   4030761 AGGAGGGATTACTGGGG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4013674 17 +   5013933 TAGAGGGATTACTGGGG
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              72570 17 -    125141 AAGAGGGGTTACCGGGG
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        81742 17 +  11725426 AAGAGGGATTACTGGGG
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       674771 17 +    730879 AAGAGGGATTACTGGGG
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5772313 17 -  36342412 GAGGGGGGTTACTGGGG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90182793 14 + 124595110 AAGAGTGGTT---TGTG
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58205348 13 +  91889043 TGGAGGGAT----GGCA
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             830167 17 +   1727078 AAGAGGGATTACCTGTG
i dasNov3.JH579681          C 0 I 2162
e calJac3.chr10             113734223 886 - 132174527 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macNem1.NW_012011533v1      3899757 5801 +   4820037 I
e macFas5.chr7               61589937  2 + 171882078 I

a score=214235.000000
s hg38.chr15_KI270850v1_alt     23404 28 +    430880 TGGGGGGTGG-GATTGGAAGCAGA----GAAGA
s panTro5.chr15              23352556 28 -  83230942 TGGGGGGTGG-GATTGGAAGCAGA----GAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23049637 28 -  99763055 TGGGGGTTGG-GATTGGAAGCAGA----GAAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2539526 28 +   2806052 TGGGGGGTGG-GATTGGAAGCAGA----GAAGA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22710753 28 - 121039945 TGGGGagtgg-gattgaaagcaga----gaaga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113306522 28 - 169600520 TGGAGATTGG-GATTGGAAGCAGA----GAAGA
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9766301 28 +  10730278 TGGGGAGTGG-GATTGGAAGCAGA----GAAGA
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3897378 28 +   4030761 TGGGGAGTGG-GATTGGAAGCAGA----GAAGa
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4013691 28 +   5013933 TGGGGAGTGG-GATTGGAAGCAGA----GAAGA
i colAng1.NW_012114844v1    C 0 C 0
s saiBol1.JH378378              72587 28 -    125141 Tggggagtgg-gattggtagcaga----gaaga
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        81759 28 +  11725426 TGGGGGGTGG-GATTGGAAGCAGA----GAAGA
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       674788 28 +    730879 TGAGGAGTGG-GATTGGAAGCAGA----GAAGA
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5772330 28 -  36342412 TGGGGAGTGG-GATTGGGAGCAGA----GAAAG
i otoGar3.GL873530          C 0 I 2
s mm10.chr9                  90182807 33 + 124595110 TGAGGGGTGACAACTGGAGACTGAGTTTGGAGA
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58205361 28 +  91889043 GGGGGCAGGG-GGGCAGGGGAAGA----GATGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             832346 28 +   1727078 TGAGAGGTGG-GGATGGAGCTGGA----GGGAA
i dasNov3.JH579681          I 2162 C 0
e calJac3.chr10             113734223 886 - 132174527 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macNem1.NW_012011533v1      3899757 5801 +   4820037 I
e macFas5.chr7               61589937  2 + 171882078 I

a score=204563.000000
s hg38.chr15_KI270850v1_alt     23432 29 +    430880 GTTTTGTTTGGTGGTTAAGAACCTAGACT
s panTro5.chr15              23352584 29 -  83230942 GTTTTGtttggtggttaaggacctagact
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23049665 29 -  99763055 GTTTTGtttggtggttaaggacctagact
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2539554 29 +   2806052 GTTTTGTTTGGTGGTTAAGAACCTAGACT
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22710781 21 - 121039945 gttttctttggtggt--------tagact
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113306550 29 - 169600520 GTTTTGTTTGGTGGTTAAGGACCTAGACT
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9766329 29 +  10730278 GTTTTGTTTGGTGGTTAAGGACCTAGACT
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3897406 29 +   4030761 gttttgtttggtggttaaggacctagact
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4013719 29 +   5013933 GTTTTGtttggtggttaaggacctagact
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113735109 29 - 132174527 GCTATGTTAGGTGGTTAAGAACCTAGGTT
i calJac3.chr10             I 886 C 0
s saiBol1.JH378378              72615 29 -    125141 gttttgtttggtggttaagcacctagact
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        81787 29 +  11725426 GTTTTGTTTGGTGGTTAAGAACCTAGACT
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       674816 29 +    730879 GTTTTgttttgtggttaagaacctagact
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5772360 28 -  36342412 GTTTAGTTTGGTGGCTGAGAGC-TAGACT
i otoGar3.GL873530          I 2 I 1260
s mm10.chr9                  90182840 28 + 124595110 GTTGAGTTTGGTGACTAA-AACTTGGACA
i mm10.chr9                 C 0 I 2
s canFam3.chr3               58205389 28 +  91889043 GTTGCGGGTGATAGTTAAGG-CCTGGACT
i canFam3.chr3              C 0 I 26
s dasNov3.JH579681             832374 15 +   1727078 GTT-----------TCCAGAGCCTGT---
i dasNov3.JH579681          C 0 C 0
e chlSab2.chr29               1318019 12 +  24206276 I
e macNem1.NW_012011533v1      3899757 5801 +   4820037 I
e macFas5.chr7               61589937  2 + 171882078 I

a score=12000.000000
s hg38.chr15_KI270850v1_alt     23461 1 +    430880 G
s panTro5.chr15              23352613 1 -  83230942 g
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23049694 1 -  99763055 g
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2539583 1 +   2806052 G
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22710802 1 - 121039945 g
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113306579 1 - 169600520 g
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9766358 1 +  10730278 g
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3897435 1 +   4030761 g
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4013748 1 +   5013933 g
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113735138 1 - 132174527 G
i calJac3.chr10             C 0 I 1334
s saiBol1.JH378378              72644 1 -    125141 g
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        81816 1 +  11725426 g
i cebCap1.NW_016107334v1    C 0 I 1630
s aotNan1.NW_018503093v1       674845 1 +    730879 g
i aotNan1.NW_018503093v1    C 0 I 1617
s mm10.chr9                  90182870 1 + 124595110 G
i mm10.chr9                 I 2 C 0
s canFam3.chr3               58205443 1 +  91889043 G
i canFam3.chr3              I 26 C 0
s dasNov3.JH579681             832389 1 +   1727078 G
i dasNov3.JH579681          C 0 C 0
e otoGar3.GL873530            5772388 1260 -  36342412 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macNem1.NW_012011533v1      3899757 5801 +   4820037 I
e macFas5.chr7               61589937 2 + 171882078 I

a score=21165.000000
s hg38.chr15_KI270850v1_alt     23462 2 +    430880 GC
s panTro5.chr15              23352614 2 -  83230942 gc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              23049695 2 -  99763055 gc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2539584 2 +   2806052 GC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22710803 2 - 121039945 gc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113306580 2 - 169600520 gc
i rheMac8.chr7              C 0 I 1668
s cerAty1.NW_011999477v1      9766359 2 +  10730278 gc
i cerAty1.NW_011999477v1    C 0 I 1674
s manLeu1.NW_012102632v1      3897436 2 +   4030761 gc
i manLeu1.NW_012102632v1    C 0 I 670
s colAng1.NW_012114844v1      4013749 2 +   5013933 gc
i colAng1.NW_012114844v1    C 0 I 1665
s calJac3.chr10             113736473 2 - 132174527 GC
i calJac3.chr10             I 1334 C 0
s saiBol1.JH378378              72645 2 -    125141 ac
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        83447 2 +  11725426 GC
i cebCap1.NW_016107334v1    I 1630 C 0
s aotNan1.NW_018503093v1       676463 2 +    730879 GC
i aotNan1.NW_018503093v1    I 1617 C 0
s otoGar3.GL873530            5773648 2 -  36342412 GT
i otoGar3.GL873530          I 1260 C 0
s mm10.chr9                  90182871 2 + 124595110 GC
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58205444 2 +  91889043 AC
i canFam3.chr3              C 0 I 1
s dasNov3.JH579681             832390 2 +   1727078 GC
i dasNov3.JH579681          C 0 C 0
e chlSab2.chr29               1318019 12 +  24206276 I
e macNem1.NW_012011533v1      3899757 5801 +   4820037 I
e macFas5.chr7               61589937 2 + 171882078 I

a score=6600.000000
s hg38.chr15_KI270850v1_alt     23464 1 +    430880 C
s panTro5.chr15              23352616 1 -  83230942 c
i panTro5.chr15             C 0 I 1677
s panPan2.chr15              23049697 1 -  99763055 c
i panPan2.chr15             C 0 I 3017
s gorGor5.CYUI01000037v1      2539586 1 +   2806052 C
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22710805 1 - 121039945 c
i nomLeu3.chr6              C 0 I 1673
s calJac3.chr10             113736475 1 - 132174527 C
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              72647 1 -    125141 c
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        83449 1 +  11725426 C
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       676465 1 +    730879 C
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5773650 1 -  36342412 C
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90182873 1 + 124595110 C
i mm10.chr9                 C 0 I 1297
s dasNov3.JH579681             832392 1 +   1727078 C
i dasNov3.JH579681          C 0 C 0
e canFam3.chr3               58205446 1 +  91889043 I
e colAng1.NW_012114844v1      4013751 1665 +   5013933 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e cerAty1.NW_011999477v1      9766361 1674 +  10730278 I
e macNem1.NW_012011533v1      3899757 5801 +   4820037 I
e macFas5.chr7               61589937 2 + 171882078 I
e rheMac8.chr7              113306582 1668 - 169600520 I

a score=11942.000000
s hg38.chr15_KI270850v1_alt     23465 2 +    430880 TG
s panTro5.chr15              23354294 2 -  83230942 TG
i panTro5.chr15             I 1677 C 0
s gorGor5.CYUI01000037v1      2539587 2 +   2806052 TG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22712479 2 - 121039945 TG
i nomLeu3.chr6              I 1673 C 0
s rheMac8.chr7              113308250 2 - 169600520 TG
i rheMac8.chr7              I 1668 C 0
s macNem1.NW_012011533v1      3905558 2 +   4820037 TG
i macNem1.NW_012011533v1    I 5801 C 0
s cerAty1.NW_011999477v1      9768035 2 +  10730278 TG
i cerAty1.NW_011999477v1    I 1674 C 0
s colAng1.NW_012114844v1      4015416 2 +   5013933 TG
i colAng1.NW_012114844v1    I 1665 C 0
s calJac3.chr10             113736476 2 - 132174527 TG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              72648 2 -    125141 cg
i saiBol1.JH378378          C 0 I 1740
s cebCap1.NW_016107334v1        83450 2 +  11725426 TG
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       676466 2 +    730879 TG
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5773651 2 -  36342412 AG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58205447 2 +  91889043 CG
i canFam3.chr3              I 1 C 0
e mm10.chr9                  90182874 1297 + 124595110 I
e dasNov3.JH579681             832393 0 +   1727078 C
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937 2 + 171882078 I

a score=160411.000000
s hg38.chr15_KI270850v1_alt     23467 26 +    430880 TCCAAGAGGGTTGACCTGAAGAACTC
s panTro5.chr15              23354296 26 -  83230942 TCCAAGAGGGTTGACCTGAAGAACTC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2539589 26 +   2806052 TCCAAGAGGGTTGACCTGAAGAACTC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22712481 26 - 121039945 TCCAAGAGGGTTGACCTGAAGAACTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113308252 26 - 169600520 TCCAagagggttgacctgaagaactc
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3905560 26 +   4820037 TCCAagagggttgacctgaagaactc
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9768037 26 +  10730278 TTCAAGAGGGTTGACCTGAAGAACTC
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4015418 26 +   5013933 TCCAAGAGGGTTGACCTGAAGAACTC
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113736478 26 - 132174527 TCCAAGAGGGTTGGCCTGAAAAACTC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107334v1        83452 26 +  11725426 TCCAAGAGGGTTGGCCTGAAGAACTC
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       676468 26 +    730879 TCCAAGAGGGTTGGCCCGAAGAACTC
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5773653 26 -  36342412 TCCTAGGAAGTTAGCCTGAAGAACTC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58205449 24 +  91889043 TCCCACGGGGCT--CCTGACGGGCCT
i canFam3.chr3              C 0 I 175
s dasNov3.JH579681             832393 17 +   1727078 ---------ATTGGCCTGAAGGGCTG
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90182874 1297 + 124595110 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I
e saiBol1.JH378378              72650 1740 -    125141 I

a score=294147.000000
s hg38.chr15_KI270850v1_alt     23493 64 +    430880 TAAGAACCTTTCTGGGCTGACAGGTGCTTTATGGGACCTTGGGGAGAGGTCACAGCATTTCGCC
s panTro5.chr15              23354322 64 -  83230942 TAAGAACCTTTCTGGACTGACAGGTGCTTTAAGGGACCCTGGGGAGAGGTCACAGCATTTCACC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2539615 64 +   2806052 TAAGAACCTTTCCGGGCTGGCAGGTGCTTTATGGGACCTTGGGGAGAGGTCACAGCATTTCACC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22712507 64 - 121039945 TAAGAACCTTTCCGGGCTGACAGGTGCTTTAAGGGACTCTGGGGAGAGGTCACAGCATTTCACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113308278 64 - 169600520 taagatcctttccaggctgacaGGTGCTTTAAGGGACCCTGGGGAGAGGTCACAGCATTTCATT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3905586 64 +   4820037 taagatcctttccaggctgacaGGTGCTTTAAGGGACCCTGGGGAGAGGTCACAGCATTTCATT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9768063 64 +  10730278 TAAGATCCTTTCTGGGCTGACAGGTGCTTTAAGGGACCCTGGGGAGAGGTCACAGCATTTCATT
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4015444 64 +   5013933 TAAGATCCTTTCTGGGCTGACAGGTGCTTTAAGGGACCCTGGGCAGAGGTCACAGCATTTCATT
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113736504 61 - 132174527 T-AGAGACTTTCTGGGCTGACAGATACTCTA--GAGCTCCACGGAGCTGTCACAGCATTTCACC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107334v1        83478 63 +  11725426 TAAGAGACTTTCCGGGCTGACAGGTGCTCTA-GGGGCTCTGGGGAGTGGTCACAGCATTTCACC
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       676494 54 +    730879 T---------TCCGGGCTGACAGGTGCTCTA-GGGGTCCTGGGGAGCAGTGACAGCATTTCACC
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5773679 56 -  36342412 CAGGAGCCTTCCTGGGCTGAGACGTACTTTAAGGGA--------ATAGGTCACAGCATTTCCTG
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH579681             832410 64 +   1727078 GAAGAGCCTTTGTGTGCTGACAACCGCCTTAAGGGATCCTGTGGAGAGGTCACAGTGTTACCTG
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90182874 1297 + 124595110 I
e canFam3.chr3               58205473 175 +  91889043 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I
e saiBol1.JH378378              72650 1740 -    125141 I

a score=336916.000000
s hg38.chr15_KI270850v1_alt     23557 70 +    430880 AGTGTCAACTTGGACCTGGGTGGGGAGGAGGGGAGGCCCTGGTCCCTGGTT--TCCTCAAAGCCAGCATTTC
s panTro5.chr15              23354386 70 -  83230942 AGTGTCAACTTGGACCTGGGTGGGGAGGAGGGGAGGCCCTGGTCCCTGCTT--TCCTCAAAGCCAGCATTTC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2539679 70 +   2806052 AGTGTCAACTTGGACCTGGGTGGGGAGGAGGGGAGGCCCTGGTCCCTGGTT--TCCTCAAAGCCAGCATTTC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22712571 70 - 121039945 AGTGTCAACTTGAACCCGGGTGGGGAGGAGGGGAGGCCCTGGTCCCTGCTT--TCCTCAAAGCCAGCATTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113308342 69 - 169600520 GGTGTCAACTTGGTCTTGGGT-GGGAGAAGGGGAGGCCCTGGTCCCTGCTT--TCCTTGAAGCCAGCATTTC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3905650 69 +   4820037 GGTGTCAACTTGGTCTTGGGT-GGGAGAAGGGGAGGCCCTGGTCCCTGCTT--TCCTTGAAGCCAGCATTTC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9768127 69 +  10730278 GGTGTCAACTTGGACTTGGGT-GGGAGAAGAGGAGGCCCTAGTCCCTGCTT--TCCTCGAAGCCAGCATTTC
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4015508 69 +   5013933 GGTGTCAACTTGGACTTGGGT-GGGAGAAGGGGAGGCCCTGGTCCCTGCTT--TCCTCGAAGCCAGCATTTC
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113736565 67 - 132174527 AGTGTCAACTTGGACCAGGT---GGGAGAAGGGAGTTCCTGCTCCCCGATT--CCCTTAAAGCCAGCATTTC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              74390 69 -    125141 AGTGTCAACTTGAACCAGGCA-GGGAGGAGGGGAGGCCCTGCTCCCTGCTT--CCCTTAAAGCCAGCATTTC
i saiBol1.JH378378          I 1740 C 0
s cebCap1.NW_016107334v1        83541 69 +  11725426 AGTGTCAACTTGGACCAGGCG-GGGACGGGGTGAGGCCCTGCTCCCTGCTT--CCCTTAAAGCCAGCGTTTC
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       676548 69 +    730879 AGTGTCAACTTGGACCAGGCG-GGGAGGAGGGGAGGCTCTGCTCTCCACTT--CCCTTAAAGCCAGCGTTTC
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5773735 56 -  36342412 AGCCTCAGCTAGGATAGGGGT--TGTGGAGGAGAGGCCTTGGCAGCAGGGT--GCCTGAA------------
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH579681             832474 65 +   1727078 TGCCTCAGCTGGAGCCTGGGG-GGTTGGCAGGG------TGCTGCATGCCTCGTCCTCGCAGCCAGGGTTTC
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90182874 1297 + 124595110 I
e canFam3.chr3               58205473 175 +  91889043 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I

a score=540421.000000
s hg38.chr15_KI270850v1_alt     23627 112 +    430880 TACAGGGAGAGAGGCAGG------------CTAGGTAACATGTGGGGTCCTTC------ACTTCACCCCATGGA-C--A-------------CCCCATGCAGTGA--------------------CTCCATGAC------------------------------------------------------------CAGATCCC---AGGG-------------------------------------G-TGGCCAGGGGAGC--GGGCCC
s panTro5.chr15              23354456 112 -  83230942 TACAGGGAGAGAGGCAGG------------CTGGGTCACATGTGGGGTCCTTC------ACTTCACCCCGTGGA-C--C-------------CCCCATTCAGTGA--------------------CTCCATGAC------------------------------------------------------------CAGATCCC---AGGG-------------------------------------G-TGGCCAGGGGAGC--GGGCCC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2539749 112 +   2806052 TACAGGGAGAGAGGCAGG------------CTAGGTAACATGTGGGGTCCTTC------ACTTCACCCCATGGA-C--A-------------CCCCATGCAGTGA--------------------CTCCATGAC------------------------------------------------------------CAGATCCC---AGGG-------------------------------------G-TGGCCAGGGGAGC--GGGCCC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22712641 106 - 121039945 TACAGGGAGAGAGGCAGG------------CTGGGTCACATGTGGGGTC-----------CTTCACCCCATGGA-C--C-------------CCCCATTCAGTGA--------------------CTCCATGAC------------------------------------------------------------CAGATCCC----GGG-------------------------------------G-TGGCCAGGGGAGC--GGGCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113308411 113 - 169600520 TACAGGGAGAGAGACAGG------------CTGGGTCACATGTGGGATCTTTC------ACTTCACCCCATGGACC--C-------------CCCCATTCAGTGA--------------------CTCCATGAC------------------------------------------------------------CAGATCCC---AGGG-------------------------------------G-TGGCCAGGGGAGC--GGGCCC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3905719 113 +   4820037 TACAGGGAGAGAGACAGG------------CTCGGTCACATGTGGGATCTTTC------ACTTCACCCCATGGACC--C-------------CCCCATTCAGTGA--------------------CTCCATGAC------------------------------------------------------------CAGATCCC---AGGG-------------------------------------G-TGGCCAGGGGAGT--GGGCCC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9768196 112 +  10730278 TACAGGGAGAGAGACAGG------------CTCGGTCACATGTGGGATCTTTC------ACTTCACCCCATGGACC--C-------------CCCCATTCAGTGA--------------------CTCCATGAC------------------------------------------------------------CAGATCCC----GGG-------------------------------------G-TGGCCAGGGGAGC--GGGCCC
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4015577 112 +   5013933 TACAGGGAGAGAGACAGG------------CTGGGTCACATGTGGGGTCTTTC------CCTTCACCCCATGGA-C--C-------------CCCCATTCAGTGA--------------------CTCCATGAC------------------------------------------------------------CAGATCCC---AGGG-------------------------------------G-TGGCCAGGGGAGT--GGGCCC
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113736632 113 - 132174527 TACTGGGAGAGAGGCAGG------------CTGGGTCACACGTGGGGTCCTCT------ACTAAATCCCATGGA-T--C-------------CCCCATCCAGCGA--------------------CTCCATGAC------------------------------------------------------------CAGATCTCAGGGAGG-------------------------------------G-GG--TAGGGGATC--GGGCCC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              74459 116 -    125141 TACAGGGAGAGAGGGAGG------------CTGGGTCACACGTGGGGTCCTCT------ACTTCACCCCATGGA-TCCC-------------CCCCATCTAGCAA--------------------CTCCATGAC------------------------------------------------------------CAGATCCCAGGGCGG-------------------------------------G-GGA-CAGGGGAGC--GGGCCC
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        83610 115 +  11725426 TACAGGGAGAGAGGCAGG------------CTGGGTCACACGTGGGGTCCTCT------ACTTCACCCCATGGA-C--C-------------CCCCATCCAGCGA--------------------CTCCATCAC------------------------------------------------------------CAGATCTCCGGGGGC-------------------------------------G-GGGCCAGGGGAGC--GGGCCC
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       676617 112 +    730879 TACAGGGAGAGAGGCAGG------------CTGGGTCACACGTGGGGTCCTCT------CCTTCACCCCATGGA-T--C-------------CCCCATCCGGCGA--------------------CTCCATGAC------------------------------------------------------------CAGATCTC---GTGG-------------------------------------G-GGGCCAGGGGAGC--GGGCCC
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5773791  94 -  36342412 -----GGAGAGAGACAGG------------CCCAACTGTGTGTGAGG------------------CCCTGTGGC-C--C-------------CACTACCTAGTGA--------------------CTCCGCACT------------------------------------------------------------CAGAACCG----GGA-------------------------------------G-TAGTGAGAGAGGA--AGGCAC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58205648 245 +  91889043 TGGGGGCAGAGAGGAAGG----------GACTGGGTTGGAAG-ATGATCTGCC------CCAACACCCCCGGGA-C--CTGTTCCCAGCTGTCCCCACCCAGGGAGCTGCCCCGCACCCTGCTGCCTCCGTGACAGACACACACACAGGGTCTCTGTGCTGTTTCAGTGGCTGGAATGCACGAGGGACTTGGCTCGGGGCCT---AGGGCGAGGGTGGGAAGAGCAGGCTGGAGCCTGAGCCAGCCG-GGGCCTTGGGAGCCTGGGCCC
i canFam3.chr3              I 175 I 26
s dasNov3.JH579681             832539 129 +   1727078 TGCAGCAAGAGAGGTAGGCAGTTCAGGCTACCCTATCGTGTGCTGGGTTCTCCCACTTTGCTTCTCCCCGCGTC-C--C-------------CACCATCTGACAA--------------------CTCCACAAC------------------------------------------------------------CGGAAGGC---AGGG-------------------------------------GTTGGGCGGAGGATC--GGAT--
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90182874 1297 + 124595110 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   2 + 171882078 I

a score=87850.000000
s hg38.chr15_KI270850v1_alt     23739 14 +    430880 ACATGTCTCTCCTG
s panTro5.chr15              23354568 14 -  83230942 ACAGGTCTCTCCTG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2539861 14 +   2806052 ACATGTCTCTCCTG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22712747 14 - 121039945 ACAGGTCTCTCCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113308524 14 - 169600520 ACAGGTGTCTCCTG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3905832 14 +   4820037 ACAGGTGTCTCCTG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9768308 14 +  10730278 ACAGGTCTCTCCTG
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4015689 14 +   5013933 ACAGGTCTCTCCTG
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113736745 14 - 132174527 CCAGGTCTCTCCTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              74575 14 -    125141 CCAAGTCTCTCCTG
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        83725 14 +  11725426 CCAGGTCTCTCCCA
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       676729 14 +    730879 CCAGGTCTCTCCAG
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5773885 14 -  36342412 TCAGGTCTTTCCTG
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH579681             832668 14 +   1727078 GCAGGTCCCTCCCA
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90182874 1297 + 124595110 I
e canFam3.chr3               58205893 26 +  91889043 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I

a score=6392.000000
s hg38.chr15_KI270850v1_alt     23753 1 +    430880 T
s panTro5.chr15              23354582 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2539875 1 +   2806052 T
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22712761 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113308538 1 - 169600520 T
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3905846 1 +   4820037 T
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9768322 1 +  10730278 T
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4015703 1 +   5013933 T
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113736759 1 - 132174527 T
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              74589 1 -    125141 T
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        83739 1 +  11725426 C
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       676743 1 +    730879 T
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5773899 1 -  36342412 T
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58205919 1 +  91889043 T
i canFam3.chr3              I 26 C 0
s dasNov3.JH579681             832682 1 +   1727078 C
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90182874 1297 + 124595110 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937 2 + 171882078 I

a score=419740.000000
s hg38.chr15_KI270850v1_alt     23754 68 +    430880 CAGTGGTG-GGCAGCTCTTTGCAG-----T-CTTGAGGTGAGAGTGAAGCTTCTGACTGGAG-----------------------TCACCTACTGTCT
s panTro5.chr15              23354583 68 -  83230942 CAGTGGCA-GGCAGCTCTTTGTAG-----T-CTCAAGGTGAGAGTGAGGCTTCTGACCGGAG-----------------------TCACCTACTGTCT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2539876 68 +   2806052 CAGTGGTG-GGCAGCTCTTTGCAG-----T-CTTGAGGTGAGAGTGAAGCTTCTGACCGGAG-----------------------TCACCTACTGTCT
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22712762 68 - 121039945 CAGTGGTG-GGCAGTTATTTGCAG-----T-CTCAAGGTGAGAGTGAGGCTTCTGACCGGAG-----------------------TCACCCACTGTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113308539 68 - 169600520 CAGTGGTG-GGCAGCTCTTTGCAG-----T-CTCGAGGTGAGAGTGAGGTTTCTGACCAGAG-----------------------TCACCTACTGTCT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3905847 68 +   4820037 CAGTGGTG-GGCAGCTCTTTGCAG-----T-CTCGAGGTGAGAGTGAGGTTTCTGACCAGAG-----------------------TCACCTACTGTCT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9768323 68 +  10730278 CAGTGGTG-GGCAGCTCTTTGCAG-----T-CTCGAGGTGAGAGTGAGGTTTCTGACCAGAG-----------------------TCACCTACTGTCT
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4015704 68 +   5013933 CAGTGGTG-GGCAGCTCTTTGCAG-----T-CTCGAGGTGAGAGTGAGGTTTCTGAGCAGAG-----------------------TCACCTACTGTCT
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113736760 68 - 132174527 TGGTGGTG-GGCAGTGCTTTGCTG-----T-CTCCAGGTTACAATGAGGCTTCTGACCCAAG-----------------------TCACATACTGTCT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              74590 68 -    125141 GGGTGGTG-GGCAGTGCTTTGCTG-----T-CACCAGGTTACAGCGAGGCTTCTGACCCGAG-----------------------TCACATACTGTCT
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        83740 67 +  11725426 TGGTGGTG-GGCAGCGCTTTGCTG-----T-CTCCAGGTTACAGTGAGGCTTCTGACCCGAG-----------------------TCACATA-TGTCT
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       676744 69 +    730879 CGGTGGTGTGGCAGCGCTTTGCTG-----T-CTCCAGGTCACACTGAGGCTTCTGACCCGAG-----------------------TCACATACTGTCT
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5773900 66 -  36342412 AGGAGGTG-GGGGGCTCTTTGTGA-----C-CTTGAGGTGAGAGTGAGGCTTCCCACC--AA-----------------------TCACCTATTGTCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90184171 64 + 124595110 CAGGCATA-GACAGCTCTTTGCTA-----T-ATCCAGGTGACAGTAAGGCTTCT----CGAG-----------------------TCACCACTCGTCT
i mm10.chr9                 I 1297 C 0
s canFam3.chr3               58205920 96 +  91889043 CAGAGAGA-GCCAGCCTGCAGCGGAGGGTT-CTGGGGGTCACACTCAGGCTGCAGGGTGGGGGTGCCAGCCTGTCCTCCGGCGCCTCACCCTCCGTCT
i canFam3.chr3              C 0 I 132
s dasNov3.JH579681             832683 65 +   1727078 AGGTGGCC-AGTGGCTCTTTGTTG-----TCCTCAGGGTGACAGTGAGGCTCCCAACTGGAG-----------------------CCACC----GTCT
i dasNov3.JH579681          C 0 C 0
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I

a score=691911.000000
s hg38.chr15_KI270850v1_alt     23822 90 +    430880 GCTTTGACCTCTTGTGGGACTGCCCAGCCCTGCTATAGTTAGCTTCAGGAGGGGC--GTGGAGGGGAAGGGCTGATGGTTTGGGGGATCCGG
s panTro5.chr15              23354651 90 -  83230942 CCTTTGACCTCTTGTGGGACTGCCCAGCCCCGCTATAATTAGCTTAAGGAGGGGC--GTGGAGGGGAAGGGCTGACGGGTTTGGGGATCCGG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2539944 90 +   2806052 GCTTTGACCTCTTGTGGGACTGCCCAGCCCTGCTATAGTTAGCTTAAGGAGGGGC--GTGGAGGGGAAGGGCTGATGGTTTTGGGGATCCGG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22712830 90 - 121039945 GCTTTGACCTCTTGTGGGACTGCCCAGCCCCGCTATAATTAGCTTAAGGAGGGGC--GTGGAGGGGAAGGGCTGGCGGCTTTGGGGATCCGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113308607 90 - 169600520 GCTCTGACCTCTTGTGGGACTGCCCAGCCGCACTATAATTAGCCTAAGGAGGGGC--GTGGAGGGGAAGGGCTGACGGGTTTGGGGATCCGG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3905915 90 +   4820037 GCTCTGACCTCTTGTGGGACTGCCCAGCCGCGCTATAATTAGCCTAAGGAGGGGC--GTGGAGGGGAAGGGCTGACGGGTTTGGGGATCCGG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9768391 90 +  10730278 GCTCTGACCTCTTGTGGGACTGCCCAGCCCCGCTATAATTAGCTTAAGGAGGGGC--GTGGAGGGGAAGGGCTGACGGGTTTGGGGATCCGG
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4015772 90 +   5013933 GCTCTGACCTCTTGTGGGACTGCCCAGCCCCGCTATAATTAGCTTAAGGAGGGGC--GTGGAGGGGAAGGGCTGATGGGTTTGGGGATCCGG
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113736828 90 - 132174527 GCTCTGACCTCCTGTGGAGCTGCCCAGCCCCACTATAATTAGCTCGAGGAGGGGC--GTGGAGGGGAAGGGCTGACAGGCTTGGGGATCCGG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              74658 90 -    125141 GCTCCGACCTCTTGTGGGACTGCCCAGCCCCGCTATAATTAGCTCGAGGAGGGGC--GTGGAGGGGAAGGGCTGACGGGCTTGGGGATCCGG
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        83807 90 +  11725426 GCTCCGACCTCTTGTGGGACTGCCCAGCCCCGCTGTAATTAGCTCGAGGAGGGGC--GTGGAGGGGAAGGGCTGACGGGCTTGGGGATCCGG
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       676813 90 +    730879 GCTCTGACCTCTTGTGGGACTGCCCAGCCCCGCTATAATTAGCTCGAGGAGGGGC--GTGGAGGGGAAGGGCTGACGGGTTTGGGGATCCGG
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5773966 87 -  36342412 GCTGTGACCTC-TGTGGGACCACCCGGCTCCACTATAATCAGCATGAGGAGGGGC----AGAGGGGAAAGGCTGACAGGCTTGGGGACCCTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90184235 89 + 124595110 ATTCCGACCCTATGTGGGGTGGCTCAGCCCTGCCATAATTAGCACAAGGAAGAGT--CCTGAAGGGACA-GCTGATGGGTGTGGGGACCTTG
i mm10.chr9                 C 0 C 0
s dasNov3.JH579681             832748 92 +   1727078 CCTCTGACCCCATGTGGGGCCACCCAGCCAGGCTATAATTAGAGTGGGGAGGGGCCCACCGAGGGGAAGGGCTGACAGCCTCAGGGATCCGG
i dasNov3.JH579681          C 0 C 0
e canFam3.chr3               58206016 132 +  91889043 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I

a score=425557.000000
s hg38.chr15_KI270850v1_alt     23912  60 +    430880 --GTGTGT---CGGCAGTGCA--GAGAACCTGGCAGTCAGCCTGCCAGAGGAAGGAAGGGCT------------------------------------------------------------------------------------------GGCTG
s panTro5.chr15              23354741  60 -  83230942 --GTGTGT---CGGCAGCGCA--GAGGACCTGGCAGTGAGCCTGCCAGAGGAAGGAAGGGCT------------------------------------------------------------------------------------------GGCTG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2540034  60 +   2806052 --GTGTGT---CGACAGTGCA--GAGAACCTGGCAGTCAGCCTGCCAGAGGAAGGAAGGGCT------------------------------------------------------------------------------------------GGCTG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22712920  60 - 121039945 --GTGTGT---CAGCAGCGCA--GAGGACCTGGCAGTGAGCCTGCCAAAGGAAGGAAGGGCT------------------------------------------------------------------------------------------GGCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113308697  60 - 169600520 --GTGTGT---CGGCAGTGCA--GAGGAGCTGGCAGTGAGCCTGCCAGAGGAAGGAAGGGCT------------------------------------------------------------------------------------------GGCTG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3906005  60 +   4820037 --GTGTGT---CGGCAGTGCA--GAGGAGCTGGCAGTGAGCCTGCCAGAGGAAGGAAGGGCT------------------------------------------------------------------------------------------GGCTG
i macNem1.NW_012011533v1    C 0 I 131
s cerAty1.NW_011999477v1      9768481  60 +  10730278 --GTGTGT---CGGCAGTGCA--GAGGAGCTGGCAGTGAGCCTGCCAGAGGAAGGAAGGGCT------------------------------------------------------------------------------------------GGCTG
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4015862  60 +   5013933 --GTGTGT---CGGCAGCGCA--GAGGAGCTGGCGGTGAGCCTGCCAGAGGAAGGAAGGGCT------------------------------------------------------------------------------------------GGCTG
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113736918  60 - 132174527 --GTGTGT---CGGCAGCGCA--GAGAACCTGGCAGTGAGCCTGTCAGAGGAAGGAAGGGCT------------------------------------------------------------------------------------------GGCTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              74748  58 -    125141 --GTGTGT---CGGCCGCGCA--GAGGACCTGGCAGTGAGCCTGTC--AGGAAGGAAGGGCT------------------------------------------------------------------------------------------GGCTG
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        83897  60 +  11725426 --GTGTGT---CAGCCGCGCA--GAGGACCTGGCAGTGAGCCTGTCGGCGGAAGGAAGGGCT------------------------------------------------------------------------------------------GGCTG
i cebCap1.NW_016107334v1    C 0 I 136
s aotNan1.NW_018503093v1       676903  60 +    730879 --GTGTGT---CGGCAGTGCG--GAGGACCTGGCAGTGAGCCTGTCAGAGGAAGGAAGGGCT------------------------------------------------------------------------------------------GGCTG
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5774053  61 -  36342412 --GCGTGT----GTTAGCGCATGAGAAACCTGGCAGTACGCCGGCCAGCGGAAGGAAGGGCC------------------------------------------------------------------------------------------GGCTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90184324  57 + 124595110 --GCGTGTGTCCGGCTGTGGG--AGGAGCCTGGCAGTGAGCCAGCCAGAGGAAGGAACGGC------------------------------------------------------------------------------------------------
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58206148 150 +  91889043 --GTGTGT---CAGCGGGGTG--AGGAGCCCGGCAGTGAGCCAGCCACAGGAAGGAAGGGCCTTTCCCAAGTACGTGCTGCTATTTATACCTCCAAGCTTGGGTTCCCTCAGGCTCCTCAGCCTCTGGTAGTTAAGTCCTCAGAAGCAGGAGGGATG
i canFam3.chr3              I 132 I 4
s dasNov3.JH579681             832840  61 +   1727078 GTGTCTGT---C-GCGGCAGG--AGGGGCCTGGCAGTGTGCTGGGCAGAGGGAGGAAGGGCC------------------------------------------------------------------------------------------AGCCA
i dasNov3.JH579681          C 0 C 0
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   2 + 171882078 I

a score=43986.000000
s hg38.chr15_KI270850v1_alt     23972 8 +    430880 ACGGCCAC
s panTro5.chr15              23354801 8 -  83230942 CCGGCCGC
i panTro5.chr15             C 0 I 123
s gorGor5.CYUI01000037v1      2540094 8 +   2806052 ACGGCCAC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22712980 8 - 121039945 CCGGCCGC
i nomLeu3.chr6              C 0 I 123
s rheMac8.chr7              113308757 8 - 169600520 CCGGCCGC
i rheMac8.chr7              C 0 I 123
s cerAty1.NW_011999477v1      9768541 8 +  10730278 CCGGCCGC
i cerAty1.NW_011999477v1    C 0 I 123
s colAng1.NW_012114844v1      4015922 8 +   5013933 CCGGCCGC
i colAng1.NW_012114844v1    C 0 I 123
s calJac3.chr10             113736978 8 - 132174527 CCGGTCGC
i calJac3.chr10             C 0 I 123
s saiBol1.JH378378              74806 8 -    125141 CCGGCCGC
i saiBol1.JH378378          C 0 C 0
s aotNan1.NW_018503093v1       676963 8 +    730879 CCGGCCGC
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5774114 8 -  36342412 CTAGCTGC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90184381 7 + 124595110 -CGCCCCC
i mm10.chr9                 C 0 I 1
s canFam3.chr3               58206302 8 +  91889043 AGGGCCGC
i canFam3.chr3              I 4 I 1
s dasNov3.JH579681             832901 8 +   1727078 CTGGCCAC
i dasNov3.JH579681          C 0 C 0
e cebCap1.NW_016107334v1        83957 136 +  11725426 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macNem1.NW_012011533v1      3906065 131 +   4820037 I
e macFas5.chr7               61589937 2 + 171882078 I

a score=606.000000
s hg38.chr15_KI270850v1_alt     23980 2 +    430880 -CT
s panTro5.chr15              23354932 2 -  83230942 -ct
i panTro5.chr15             I 123 C 0
s gorGor5.CYUI01000037v1      2540102 2 +   2806052 -CT
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22713111 2 - 121039945 -ct
i nomLeu3.chr6              I 123 C 0
s rheMac8.chr7              113308888 2 - 169600520 -ct
i rheMac8.chr7              I 123 C 0
s macNem1.NW_012011533v1      3906196 2 +   4820037 -ct
i macNem1.NW_012011533v1    I 131 C 0
s cerAty1.NW_011999477v1      9768672 2 +  10730278 -ct
i cerAty1.NW_011999477v1    I 123 C 0
s colAng1.NW_012114844v1      4016053 2 +   5013933 -ct
i colAng1.NW_012114844v1    I 123 C 0
s calJac3.chr10             113737109 2 - 132174527 -CT
i calJac3.chr10             I 123 C 0
s saiBol1.JH378378              74814 2 -    125141 -CT
i saiBol1.JH378378          C 0 I 123
s aotNan1.NW_018503093v1       676971 2 +    730879 -CT
i aotNan1.NW_018503093v1    C 0 I 89
s otoGar3.GL873530            5774122 2 -  36342412 -CT
i otoGar3.GL873530          C 0 I 64
s mm10.chr9                  90184389 1 + 124595110 -C-
i mm10.chr9                 I 1 C 0
s canFam3.chr3               58206311 1 +  91889043 -C-
i canFam3.chr3              I 1 C 0
s dasNov3.JH579681             832909 2 +   1727078 CC-
i dasNov3.JH579681          C 0 I 156
e cebCap1.NW_016107334v1        83957 136 +  11725426 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937 2 + 171882078 I

a score=23043.000000
s hg38.chr15_KI270850v1_alt     23982 3 +    430880 TGA
s panTro5.chr15              23354934 3 -  83230942 tgg
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2540104 3 +   2806052 TGA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22713113 3 - 121039945 tgg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113308890 3 - 169600520 tgg
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3906198 3 +   4820037 tgg
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9768674 3 +  10730278 tgg
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4016055 3 +   5013933 tgg
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113737111 3 - 132174527 TGG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              74939 3 -    125141 TGG
i saiBol1.JH378378          I 123 C 0
s aotNan1.NW_018503093v1       677062 3 +    730879 TGG
i aotNan1.NW_018503093v1    I 89 C 0
s otoGar3.GL873530            5774188 3 -  36342412 TGA
i otoGar3.GL873530          I 64 I 77
s mm10.chr9                  90184390 3 + 124595110 TGA
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58206312 2 +  91889043 -GG
i canFam3.chr3              C 0 I 19
s dasNov3.JH579681             833067 3 +   1727078 tgg
i dasNov3.JH579681          I 156 C 0
e cebCap1.NW_016107334v1        83957 136 +  11725426 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937 2 + 171882078 I

a score=109527.000000
s hg38.chr15_KI270850v1_alt     23985 16 +    430880 GTTTCTGA---C-TCCCAAG
s panTro5.chr15              23354937 16 -  83230942 gtttctga---c-tcccaAG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2540107 16 +   2806052 GTTTCTGA---C-TCCCAAG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22713116 16 - 121039945 gtttctga---c-tcccaAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113308893 16 - 169600520 gtttctga---c-tcccaAG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3906201 16 +   4820037 gtttctga---c-tcccaAG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9768677 16 +  10730278 gtttctga---c-tcccaAG
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4016058 16 +   5013933 gtttctga---c-tcccaAG
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113737114 16 - 132174527 GTTTCTGA---C-TCCCAAG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              74942 16 -    125141 GTTTCTGA---C-TCCCAAG
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        84093 16 +  11725426 GTTTCTGA---C-TCCCAAG
i cebCap1.NW_016107334v1    I 136 C 0
s aotNan1.NW_018503093v1       677065 16 +    730879 GTTTCTGA---C-TCCCGAG
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5774268 17 -  36342412 GTTTCCAG---TGTCCCAAG
i otoGar3.GL873530          I 77 C 0
s mm10.chr9                  90184393 11 + 124595110 CTTT---------TCCCAAG
i mm10.chr9                 C 0 I 424
s canFam3.chr3               58206333 16 +  91889043 GATGCTGA---CGTTCCAT-
i canFam3.chr3              I 19 C 0
s dasNov3.JH579681             833070 19 +   1727078 gtttctgaaccc-tccccag
i dasNov3.JH579681          C 0 C 0
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I

a score=372206.000000
s hg38.chr15_KI270850v1_alt     24001 66 +    430880 -------------ACAGCACCTGG------------GCCTGATTCTGGCAGTGGATTCTGTG---------AGGG--------------TC---ACCTTATGCTCCCAACTTCTCCC
s panTro5.chr15              23354953 66 -  83230942 -------------ACAGCACCTCG------------GCCTGATTCTCACAGTGGATTTTGTG---------AGGG--------------TC---GCCTCATGCTCCCGACTTCTCCC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2540123 66 +   2806052 -------------ACAGCACCTCG------------GCCTGATTCTGGCAGTGGATTCTGTG---------AGGG--------------TC---ACCTCATGCTCCCAACTTCTCCC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22713132 66 - 121039945 -------------ACAGCACCTCG------------GCCTGTTTCTGGCAGTGGATTCTGTG---------AGGG--------------TC---GCCTCATGCTCCCGACTTCTCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113308909 66 - 169600520 -------------ACAGCACCTGG------------GCCTGATTCTGGCAGTGGATTCTGTG---------AGGG--------------TC---GCCTCATGCTCCCGACTTCTCCC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3906217 66 +   4820037 -------------ACAGCACCTGG------------GCCTGATTCTGGCAGTGGATTCTGTG---------AGGG--------------TC---GCCTCATGCTCCCGACTTCTCCC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9768693 66 +  10730278 -------------ACAGCACCTGG------------GCCTGATTCTGGCAGTGGATTCTGTG---------AGGG--------------TC---GCCTCATGCTCCCGACTTCTCCC
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4016074 66 +   5013933 -------------ACAGCACCTGG------------GCCTGATTCTGGCAGTGGATTCTGTG---------AGGG--------------TC---GCCTCATGCTCCCGACTTCTCCC
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113737130 61 - 132174527 -------------ACAGCACCTG-----------------GATTCCTGCAGTGGATTCGGTG---------AAGG--------------TC---GCCTCCTGCTCCCGACTTCTCCC
i calJac3.chr10             C 0 I 1
s saiBol1.JH378378              74958 65 -    125141 -------------GCAGCACCTG-------------GCCTGATTCCTGCAGTGGATTCGGTA---------AGGG--------------TT---GCCTTGTGCTCCTGACTTTTCCC
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        84109 65 +  11725426 -------------ACAGCACCTG-------------GCCTGATTCCTGCAGTGGATTCGGTG---------AGGG--------------TT---GCCTCGTGCTCCGGAGTTCTCCC
i cebCap1.NW_016107334v1    C 0 I 1
s aotNan1.NW_018503093v1       677081 65 +    730879 -------------ACAGCACCTG-------------GCCTGATTCCTGCAGTGGATTCGGTG---------AGGG--------------TG---GCCTCGTGCTCCCGACTTCTCCC
i aotNan1.NW_018503093v1    C 0 I 1
s otoGar3.GL873530            5774285 88 -  36342412 ---------------CGTACCTGGCCCTGAGTATGACCCTGATTCTGGCCATAGGTCCTGTGGAACCTATTAGAG--------------TCTTTGTCTCATGCCCCCTCCCTTCTCA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58206349 79 +  91889043 --------------CAGCACGTGG------------GCCTGAATATGGCCCTGATTCTGGTG---------GGAGGTCTGGAGGACCCCTC---CCCCTATACCCCCAACCTGTCAC
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             833089 79 +   1727078 ttggtaccctttcCCTGAATGTGG------------CCCTTATTCTGGTGATGGGTCCTGTG---------AGGG--------------CC---ACCTCATGTTCCCCAATACTACC
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90184404 424 + 124595110 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I

a score=591985.000000
s hg38.chr15_KI270850v1_alt     24067 126 +    430880 A-ACATCCAGGGTGGG-CT-GAGAGGTTGTTGCGGCTTCAGCTGCCCAGCAGCAGGCCTGCAGGA---GCCACATGTGCAGCGAGTCAGCACTGGGG--CAGCCAGGAAACAAAAGGGCTCGGCTGCAGCCCAG
s panTro5.chr15              23355019 127 -  83230942 ACACACCCAGGGTGGG-CT-GAGAGGTTGTTGTGGCTTCAGCTGCCCAACAGCAGGCCCGCAGGA---GCCACATGTGCAGCGAGTCAGCACTGGGG--CAGCCAGGAAGCAGAAGGGCTTAGCTGCAGCCCAG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2540189 127 +   2806052 ACACATCCAGGGTGGG-CT-GAGAGGTTGTTGTGGCTTCAGCTGCCCAGCAGCAGGCCTGCAGGA---GCCACATGTGCAGCGAGTTAGCACTGGGG--CAGCCAGGAAACAAAAGGGCTCGGCTGCAGCCCAG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22713198 127 - 121039945 ACACACCCAGGGTGGG-CT-GAGAGGTTGTTGTGGCTTCAGCCGCCCAACAGCAGGCCCTCAGGA---GCCACATGAGCAGCAAGTCAGCACTGGGT--CAGCCAGGAAGCAGAAGGGCTGGGCTGCAGCCCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113308975 127 - 169600520 ACACACCCAGGGTGGG-CT-GAGAGGTTGTTGTGGCTTCAGCTGCCCAGCAGCAGGCCCACAGGA---GCCACACGAGCAACGAGTCAGCACTGGGG--CAGCCAGGAAACAGAAGGGCTGGGCTGTAGCCCAG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3906283 127 +   4820037 ACACACCCAGGGTGGG-CT-GAGAGGTTGTTGTGGCTTCAGCTGCCCAGCAGCAGGCCCACAGGA---GCCACATGAGCAACGAGTCAGCACTGGGG--CAGCCAGGAAACAGAAGGGCTGGGCTGTAGCCCAG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9768759 127 +  10730278 ACACACCCAGGGTGGG-CT-GAGAGGTTGTTGTGGCTTCAGCTGCCCAGCAGCAGGCCCACAGGA---GCCACACAAGCAACGAGTCAGCACTGGGG--CAGCCAGGAAACAGAAGGGCTGGGCTGTAGCCCAG
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4016140 127 +   5013933 ACACACCCAGGGTGGG-CT-GAGAGGTTGTTGTGGCTTCAGCTGCCCAGCAACAGGCCCACAGGA---GCCACACGAGCAACGAGTCAGCACTGGAC--CAGCCAGGAAACAGAAGGGCTGGGCTGTAGCCCAG
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113737192 125 - 132174527 -TATACCCAGGGGGAG-CT-GACAGGTTGT---GGCTTCAGCTGCCCAGCAGCAGGCCCACAGGA---GCCACATGAGCAGCGAGTCAGCACTGGGGTCCAGCCAGGAAACAGAAGGGCTGGGCTGTAGCCCAG
i calJac3.chr10             I 1 C 0
s cebCap1.NW_016107334v1        84175 125 +  11725426 -CACACCCAGGGGGAG-CT-GACAGGTTGT---GGCTTCAGCTGCCCAGCAGCAGGCCCACAGGA---GCCACATGAGCAGCGAGTCAGCACTGGGAAACAGCCAGGAAACAGAAGGGCTGGGCTGCAGCCCAG
i cebCap1.NW_016107334v1    I 1 C 0
s aotNan1.NW_018503093v1       677147 110 +    730879 -CACACCCAGGGGGAG-CC-GACAGGTTGT---GGCTTCAGCTGCCCAGCAGCAGGCCC------------------GCAGCGAGTCAGCGCTGGGGCCCAGCCAGGAAACAGAAGGGCTGGGCTGCAGCCCAG
i aotNan1.NW_018503093v1    I 1 C 0
s otoGar3.GL873530            5774373  89 -  36342412 -TGCACGCAGCGTGGGCCT-AACAGGTTGTTGTCACTCTAGCTGCCTAGCAACAGGCCTGTAG-------------------------GCACTGGGT-CCAGCCACTAAGCAAAGGA-----------------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58206428  91 +  91889043 ACACATATAGAATGGA-CCAGAGAGGCTTCTGTCACTCCAACTGCCC-------GGCCCACAGGACATGACACATG----GCAAGTTC-----------CAGCCAGGAGACAAA--------------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             833168 104 +   1727078 -----CCCAGGATCAC-CC-GA------GTTGTTGCTCCAGCCGCCCA-------GCCCACAGGA---ACTGTACC--CGGCAAGTCAGCCCTGGGT-----CCAAGAAAGGGAAGGGCTGGGATTTGGCCTGG
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90184404 424 + 124595110 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   2 + 171882078 I
e saiBol1.JH378378              75023   0 -    125141 C

a score=3291354.000000
s hg38.chr15_KI270850v1_alt     24193 545 +    430880 GGACTGTTGGTGCCGGGATGAGGC--GCATTGGACCC-CTCAGCCCCTGGGTCAGA-GG-ACCCCCTGGCTGG---------------GATGGGTGA-----GC--CCCCAGTCTACCTCCTCGAGCCACGGAATGATGGCGGGAAGGAGGGAG-CCCAGGGCC-AGCTGA---CCCCACCAC--------CCCCGGCTGACACTCTGCCCCGGGTGCAGGCCCAGGGAGGCTCAGGGAGCCCCAAGCCGCAGGAGAACTTGGGACACTCCTTTCTCCCTGCCAGGCCTC-GCTGCCATGGTTTTGAACTTGTATGTGGGGTGAAGTATTTGAGGCCAGGCTCGCAGTTGAATGGGAGGAGCCCTGCACTGGGGGtagcc--cagtgagtagacacagcctggtgcaggcagcctgggcctggctccaggtcctggccatcacgtccctcttgcgcg--acccgggacaagtgac----gt-----a------tgggccctgagtgcatg-agggaagatgatgg-tagag---tctgcccaggatgttg-tgaggagcaaatgagagggtatgcccccagcaccctggaccagtctgg-----cacgtggtCATC
s panTro5.chr15              23355146 543 -  83230942 GGACTGTTGGTGCCGGGATGAGGT--GCATTGGACCC-CTCAGCCCCTGGGTCAGA-GG-ACCCCCTGGCTGG---------------GATGGGTGA-----GC--CCCCAGTCTACCTCCTCGAGCCACAGAATGCTAGCGGGAAGGAGGGAG-CCCAGGGCC-AGCTGA---CCCCACCAC--------CCGCCACTGACACTCTGCCCCGGGTGCAGGCCCAGGGAGGCTCAGGGAGCCCCAAGCCGCAGGAGCACTTGGGACACTCCTTTCTCCCCGCCAGGTCTC-GCTGCCATGGTTTTGAACTTGTATGTGGGGTGAAGTATTTGAGGCCAGGCTCGCGGTTGAATGGGAGGAGCCCTGCACTGggggtagcc--cagtgagtagacacagcctggtgcaggcagcctgggcctggctccagatcctggccatcacatctctcttgtgcg--acccggggccagtgac----ct-----a------tgggccctgagtgcgtg-aggggagatgatgg-tagag---tctgcccaggatgttg-tgaggagcaaatgagaGGGTATGCCCCCAGCACCCTGGACCAGCCTGG-------CCTGGTCATT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2540316 543 +   2806052 GGACTGTTGGTGCTGGGATGAGGC--GCATTGGACCC-CTCAGCCCCTGGGTCAGAGGG-ACCCCCTGGCTGG---------------GATGGGTGA-----G---CCCCAGTCTACCTCCTCGAGCCATGGAATGATGGCGGGAAGGAGGGAG-CCCAGGGCC-AGCTGA---CCCCACCAC--------CC-CCGCTGACACTCTGCCCCGGGTGCAGGCCCAGGGAGGCTCAGGGAGCCCCAAGCCGCAGGAGAACTTGGGACACTCCTTTCTCCCTGACAGGCCTC-GCTGCCATGGTTTTGAACTTGTATGTAGGGTGAAGTATTTGAGGCCAGGCTCGCGGTTGAATGGGAGGAGCCCTGCACTGggggtagcc--cagtgagtagacacagcctggtgcaggcagcctggg-ctggctccagatcctggccatcacgtccctcttgcgcg--acccgggacaagtgac----at-----a------tgggccctgagtgcatg-aggggagatgatgg-tagag---tctgcccaggatgttg-tgaggagcaaatgagaGGGTATGCCCCCAGCACCCGGGACCAGCCTGG-----CACGTGGTCATC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22713325 546 - 121039945 GGACTGTTGGTGCTGGGATGAGGC--GCATGGGACCC-CTCAGCCCCTGGGTCAGA-GG-ACCCCCTGGCTGG---------------GATGTGTGA-----GC--CCCCAGTCTACCTCCTCGGGCCACGGAATGCTAGCGGGAAGGAGGGAG-CCCAGGGCC-AGCTGA---ACCCACCAC--------CCCCCGCTGACACTCAGCCCCGGGTAAAGGCCCAGGGAGGCTCAGGGAGCCCCAAGCCACAGGAGCACTTGGGACACTCCTTTCTCCCCGCCAGGCCTCGGCTGCCATGGTTTTGAACTTGTATTTGGGGTGAAGTATTTGAGGCCAGGCTCGTGGTTGAGTGGGAGGAGCCCTGCACTGggggcagcc--cagtgagtagacacagcctggtgcaggcaacctgggcctggcttcagatcctggccatcacatctctcttatgcg--acccggggccagtgac----ct-----a------tgggccctgagtgcatg-aggggagatgatgg-tagag---tctgcccaggatgttg-tgaggagcaaaggagaGGGTATGCCCCCAGCACCCTGGACCAGCCTGG-----CACGTGGTCATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113309102 546 - 169600520 GGACTGTTGGTGCTGGGATGAGGC--GCATGGGACCC-CTCAGCCACAGGATCAGA-GG-ACCCCCTGGCTGG---------------GATGGGTGA-----GC--CCCCAGTCTACCTCCTGGAGCCACGGAATGCTAGCGGGAAGGAGGGAG-CCCAGGGCC-AGCTGA---GCCCACCAC--------CCGCTGCTGACACTCTGCCCCGGGTGCAGGCCCAGGGAGGCTCAGGGAGCCCCAAGCCGCAGGAGCACTTGGGACGCTCCTTTCTCCCCGCCAGGCCTTGGCTGCCATGGTTTTGAACTTGTATTTGGGGTGAAGTATTTGAGGCCAGGCTCGCGGCTGAATGGGAGGAGCCCTGCACTGggggcagct--tagtgagtagacacagcctggtgcaggcagcctgggcctggcttcagatcctggccatcacgtccctcttgtgtg--acccagggcaagtgac----gt-----a------tgggccctgagtgtgtg-aggagagatgatgg-tagag---tctgcccgggatgttg-tgaggagcaaatgagagggtatgcccccagtacccggggccagcctgg-----cacgtggtCATC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3906410 546 +   4820037 GGACTGTTGGTGCTGGGATGAGGC--GCATGGGAGCC-CTCAGCCACGGGATCAGA-GG-ACCCCCTGGCTGG---------------GATGGGTGA-----GC--CCCCAGTCTACCTCCTGGAGCCACGGAATGCTAGCGGGAAGGAGGGAG-CCCAGGGCC-AGCTGA---GCCCACCAC--------CCGCTGCTGACACTCTGCCCCGGGTGCAGGCCCAGGGAGGCTCAGGGAGCCCCAAGCTGCAGGAGCACTTGGGACACTCCTTTCTCCCCGCCAGGCCTTGGCTGCCATGGTTTTGAACTTGTATTTGGGGTGAAGTATTTGAGGCCAGGCTTGCGGCTGAATGGGAGGAGCCCTGCACTGggggcagct--tagtgagtagacacagcctggtgcaggcagcctgggcctggcttcagatcctggccatcacgtccctcttgtgtg--acccagggcaagtgac----gt-----a------tgggccctgagtgtgtg-aggagagatgatgg-tagag---tctgcccgggatgttg-tgaggagcaaatgagaGGGTATGCCCCCAGTCCCCGGGGTCAGCCTGG-----CACGTGGGCTTG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9768886 546 +  10730278 GGACTGTTGGTGCCGGGATGAGGC--ACATGGGACCC-CTCAGCCACGGGATCAGA-GG-ACCCCCTGGCTGG---------------GATGGGTGA-----GC--CCCCAGTCTACCTCCTGGAGCCACGGAATGCTAGCGGGAAGGAGGGAG-CCCAGGGCC-AGCTGA---GCCCACCAC--------CCGCTGCTGACACTCTGCCCCGGGTGCAGGCCCAGGGAGGCTCAGGGAGCCCCAAGCCGCAGGAGCACTTGGGACACTCCTTTCTCCCCGCCAGGCCTTGGCTGTTATGGTTTTGAACTTGTGTTTGGGGTGAAGTATTTGAGGCCAGGCTCGCGGCTGAATGGGAGGAGCCCTGCACTGggggcagct--tagtgagtagacacagcctggtgcaggcagcctgggcctggcttcagatcctggtcatcacgtccctcttgtgtg--acccagggcaagtgac----gt-----a------tgggccctgagtgtgtg-aggagagatgatgg-tagag---tgtgcccgggatgctg-tgaggagcaaatgagaGGGTATGCCCCCAGTACCCGGGGCCAGCCTGG-----CACGTGGTCATC
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4016267 545 +   5013933 GGACTGTTGGTGCCGGGATGAGGC--GCATTGGACCC-CTCAGCCACGGGGTCAGA-GG-ACCCCCTGGCTGG---------------GATGGGTGA-----GC--CCCCAGTCTACCTCCTGGAGCCACAGAATGCTAGCGGGAAGGAGGGAG-CCCAGGGCC-AGCTGA---GCCCACCAC--------CCCCTGCTGACACTCTGCCCTGGGTGCAGGCCCAGGGAGACTCAGGGAGCCCCAAGCTACAGGAGCACTTGGGACACTCC-TTCTCCCCGCTAGGCCTTGGCTGCCATGGTTTTGAACTTGTATTTGGGGTGAAGTATTTGAGGCCAGGCTCGTGGCTGAATGGGAGGAGCCCTGCACTGggggcagct--tagtgagtagacacagcctggtgcaggcagcctgggcctggcttcagatcctggccatcacgtccctcttgtgtg--acccagggcaagtgac----gt-----a------tgggccctgagtgtatg-aggagagacgatgg-tagag---tctgcccgggatgttg-tgaggagcaagtgagagggtatgcccccagtacccgggaccagcctgg-----cacgtggtCATC
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113737317 545 - 132174527 GGACTGTCGGTGCTGGGGTGAGGC--ACATTGGATCC-CTCAGCCACCGGGTCAGA-GG-ACCCCCTAGCTAG---------------GATGGGTGA-----GC--CCCCA-TTAATGTCCTTGAACCATGGAATGCTAGAGGGAAGGAAGGAA-CCCAGGGCC-AGCTGA---CCCCATCAC--------CCTCTGCCGACACTCTGCCCTGGGTGCAGGCCCAGGGAGGCTCAGGGAACCCCAAGCCGCCGGAGCACTTGGGGCACTCCTTTCTTCCCGCCAGGCCTCGGCTGCCATGGTTTTAAACTTTTATTTGGGGTGAAATATTTGAGGCTGGGCTCGCTGTTGAATGGGAGGAGCCCTGCCCTGggggcagcc--cagtgagcagacacagcctggtgcaggcagcctagacttggcttgagatcctggccatcacgttcctcttgcgtg--gctcagggcaagtgac----gg-----a------tgagtcctgagtgtgtg-aggggagatgatgg-tagag---tctccctgggatgttg-tgaggagcgaatgagaGGGTATGCACCTGCTACCTGGGACCAGCCTGG-----CACGTGGTCATC
i calJac3.chr10             C 0 I 92
s saiBol1.JH378378              75023 524 -    125141 GGACTGTTAGTGCTGGGGTGAGGA--GCATTGGACCC-CTCAGCCACCGGGTCAGA-AG-ACCCCCTAGGTAG---------------GATGGGTGA-----GT--CCCCA-CCTACGTCCTCGAACCATGGAATGCTAGA-GGAAGGAAGGAG-CCCAGGGCC-AGCTGA---CCCCATCAC--------CCC---------------------TGCAGGCCCAGGGAGGCTCAGGGAGCCCCAAGCTGCCGGAGCACTTGGGACACTCCTTTCTCCCCACCAGGCCTCGGCTACCATGG-TTTAGACTTGTATTTGGGGTGAAGTATTTGAGGCCGGGCTCACGGTTGAAAGGGAGGAGCCCTGCCCTGggggcagcc--cagtgagcagacacagcctggtgcaggcagcctggacttggcttgagatcctggccatcaccttcctcttgtgtgtatcccagggcaaatgac----gg-----a------tgagtcctgagtgtgtg-agggcagatgatgg-tacag---tctgcctgggatgttg-tgcggagcgaatgagagggtgtgcacccggtgcctggggccagcctgg-----cacGTGGCCATC
i saiBol1.JH378378          C 0 I 135
s cebCap1.NW_016107334v1        84300 543 +  11725426 GGACTGTCGGTGCTGGGGTGAGGC--GCACTGGACCC-CTCAGCCACCGGGTCAGA-AG-ACCCCTTAGCTAG---------------GATGGGTGA-----GC--CCCCA-TCTATGTCCTCGAACCATGGAATGCTAGA-GGAAGGAAGGAG-CCCAGGGCC-AGCTGA---CCCTATCAC--------CCTCTGCTGGCACTCTGCCCTGGGTGCAGG-CCGGGGAGGCTCAGGGAGCCCAAAGCCGCTGGAGCACTTGGGACACTCCTTTCTCCCCGCCAGGCCTCGGCTGCCATGGTTTTAAACTTGTATTTGGGGTGAAGTATTTGAGGCCGGGCTCACGGTTGAATGGGAGGAGCCTTGCCCTCggggcagcc--cagcgagcagacacagcctggtgcaggcagcctggacttggcttgagatcctaaccatcacgttcctcttgtgtg--gcccagggcaagtgac----gg-----a------tgggtcctgagtgtgtg-aggggagatgatgg-tacag---tctgcctgggatgttg-tgaggagcgaatgagagggtgtgcccctggtgcccaggaccagcctgg-----cacGTGGCCATC
i cebCap1.NW_016107334v1    C 0 I 69
s aotNan1.NW_018503093v1       677257 545 +    730879 GGACTGTCGGTGCTGGGGTGAGGC--GCATTGGACCC-CTCAGCCCCCGGGTCAGA-GG-ACCCCCTAGCTAG---------------GATGGGTGA-----GC--CCCCA-TCAATGTCCTTGAACCATGGAATGCTAGAGGGAAGGAAGGAG-CCCAGGGCC-AGCTGA---CCCCACCAC--------CCTCTGCCGACACTCTGTCCTGGGTGCAGGCCCAGGGAGGCTCATGGAGCCCCAAGCCGCCGGAGCACTTGGGACACTCCCTTCTCCCCGCCAGGCCTCGGCTGCCATGGTTTTAAACTTGTATTTGGGGTGAAGTATTTGAGGCTGGGCTCACGGTTGAATGGGAGGAGCCCTGCCCTGggggcagcc--cagtgagtagacacagcctggtgcaggcagcctggacttggcttgagatcctggccatcatgttcctcttgtgtg--gcccagggcaagtgac----gg-----a------tgggtcctgagtgtgtg-aggggagatgatgg-tagag---tctgcctgggatgttg-tgaggagcgaatgagagggtgtgcacccggtgcccgggaccagcctgg-----cacgtggtCATC
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5774462 532 -  36342412 -------TGGTTGTGGGCTGGGGC--ACATCAGACAC-CTCA--CTGTGTGTCGGG-AA-GCCCACTGGCTGG-GTCTGGGTCA----GAGGGGTGA-----GC--CTCGG-GCCACATCCTTGAGTCACAGTTCACTAGAGGGGAGGAGGAAA-CCCGGGGCTGGGCTGA---CCCCACCAC--------CCCCAGTTGATGCTCTGCCCTGGGTCTAGG----------CTCTGGGAGCCCCAAGCTGTGGGAACACTCTGGACACTCCCTTCTCATCGCCAGACCTCAGCTGGCACACATCTGAACTTATATTTGGGGTGAAGTATTTGAGG-TGGGCTCGTGGCTAGAGAGGAGGAGCCCTGTGCTGGGGGCAGCC--CAGAGAGTGGACACGATGTGGTGctggcagcctgtgcctggcttcagatccaggccatcacttccctttcatgtg--acctgggccaagtgactctgct-----g------tgggccctgtgtgtgtgtagcaaagatactaattagagttttctgcctgggacattg-tgaggcgcaaatgagagggtacac-------------agcaagcCTAG-----CCTGTGCTCACC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58206519 471 +  91889043 -----------GCCAGAA-GAGG------------CC-ATCAGACCCCAAGTTGGA-GG-AGCCCCCAGGCGGGGTCTGAGGCAGAGGGGTGGGCGA-----GCCTCCCCAGCCCCTGTCTTGAA------------TTGCAGGACAGAAGGAGCCCCAGGGTTGGGCTGA---CCCTGCCCCCATCCTCACCCCAGCTGACACTTGGCCCCAAGGGCCAGGCCAG-----------------CCATCAGCAGGCGC-----------------CTTTCTGCCAGGACTCAGCTGCTGTGCTTTTGAACTTACAC-TGGGGTGAAGTA-TTGAGGTCAGGTCTGTAGATGGACGGG------CCTTCACTGGGGCCACCCAGCAAGGGATATGCGGGGCCC----CCAGCAGCCTGAGTCTGGCATTAGATCCCAACCATTAGTGTTCGCTGGTGGG--ACCCAGGGCAAGGGGT----GTCCTGCC------TCAGGCCTGCGTGTGCA-CAGAGAGGCA-----TAGGG---TCTTCCTCCCAGGTGGTTGAGGAGCAACCAAG--------------------------GACCTGG-----CCCATGATCATC
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             833272 454 +   1727078 GAGCTGTCTGTG-TGGGATGAGGCAGGGGTGGGGTCCAAGCAGCCC-----TCAGA-GGTTTCCCCCCACCAG-TTCTGCATCA----GAGGGGTGGTGGGCAC--CCCCATTTCACGTCC-------------CGCTGGA-GGAAAGAGGAAG-CCCTGCGCT-AGCTGATGCGCCTGCTGC------TTTCCCAGCTGGTGCTCTGCGC----------------------CAGGGCGCCCCAGGC------------TGAGGCCATCCTTTCTCTCCACTAGGCCTCCCACGGCATGTCTTGGAACTTCTATTTGGGATGAAGGCTTTCGGGCCAGGATTGTGGTGAGACAGG-----------------GGATGct--gcgtg--------------ggtgccggcagcctgggcctggcctc------------------cactgctgtgtg--acct-gggcaggggac----gt-----gccactctgggcccagtgtctgca-ggggaggatgataa-cagtc--ctctgcccaggatgttg-tgagga------------------------tGCTGAGCACCAGCCTAGTTGAGTCTGTGGACATC
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90184404 424 + 124595110 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   2 + 171882078 I

a score=829946.000000
s hg38.chr15_KI270850v1_alt     24738 143 +    430880 TTGGGCACTAGGACTGCATCCAG-CAGCTGCTCAT---------------------------------C----TGCCAAC-GCCCATGTTAGAGGA-TCTGTTTCCAGCCATGATGGG-CAGTCTGAGTGATTC---CAGGAGGAT-TCCAGGGTTCT---CAGTAGAAGTCT-GGTCA---CCTTG--GCTTTCTT
s panTro5.chr15              23355689 148 -  83230942 TGGGACACTAGGACTGCATCCAGCCAGCTGCTCAT---------------------------------CAAAATGCCAACGGCCCATCGTTGAGGA-TCTGTTTCCAG-CAGGATGGG-CAGTCTGAGTGATTC---CAGGAGGAT-TCCAGGGTTCT---CAGTAGAAGTTT-GGTCA---CCTTG--GCTTTCTT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2540859 143 +   2806052 TTGGGCACTAGGACTGCATCCAG-CAGCTGCTCAT---------------------------------C----TGCCAAC-GCCCATGTTAGAGGA-TCTGTTTCCAGCCAGCATGGG-CAGTCTGAGTGATTC---CAGGAGGAT-TCCAGGGTTCT---CAGTAGAAGTCT-GGTCA---CCTTG--GCTTTCTT
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22713871 143 - 121039945 TTGGGCACTAGGACTGCATCCAG-CAGCTGCTCAT---------------------------------C----TGCCAAC-ACCCATGTTAGAGGA-TCTGTTTCCAGCCAGCATGGG-CAGTCTGGGTGATTC---CAGGAGGAT-TCCAGGGTTCT---CAGTAGAAGTCT-GGTTA---CCTTG--GCTTTCTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113309648 143 - 169600520 TTGGGCACTAGAACTGCATCCAG-CAGCTGCTCAT---------------------------------C----TGCCAAC-GCCCGTGTTTAAGGG-TCTGTTTCCAGCCAGCATGGG-CAGTCTGGGTGATTC---CAGGAGGAT-TCCAGGGTTCT---CAGTAGAAGTCT-GGTCA---CCTTG--GCTTTCTT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3906956 143 +   4820037 TTGGTCACTAGAATTGCATCCAG-CAGCTGCTCAT---------------------------------C----TGCCAAC-GCCTGTGTTCGAGGG-TCTATTTCTAGCCAGCATGGG-CAGTCTGGGTGATTC---CAGGAGGAT-TCCAGGGTTCT---CAGTAGAAGTCT-GGTCA---CCTTG--GCTTTCTT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9769432 144 +  10730278 TTGGGCACTAGAACTGCATCCAG-CAGCTGCTCAT---------------------------------C----TGCCAAA-GCCCGTGTTCGAGGG-TCTGTTTCCAGCCAGCATGGG-CAGTCTGGGTGATTC---CAGGAGAAT-TCCAGGGTTCT---CAGTAGAAGTCTGGGTCA---CCTTG--GCTTTCTT
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4016812 143 +   5013933 TTGGGCACTAGAACTGCATCCAG-CAGCTGCTCAT---------------------------------C----TGCCAAC-GCCCGTGTTCGAGGG-TCTGTTTCCAGCCAGCATGGG-CAGTCTGGGTGATTC---CAGGAGGAT-TCCAGGGTTCT---CAGTAGAAGTCT-GGTCA---CCTTG--GCTTTCTT
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113737954 176 - 132174527 TTGGGCACTACGACTGCATGCAG-CAGCTGCTCCTCTGCCCACTCCCATGTTAGAGAGATCTGTTTCCC----TGCCCAC-TCCCATGTTAGAGGGATCTGTTTCCAGCCAGCA-GGA-CAGTCTGGGTGACTC---CAGGAGGAT-TCCAGGGTCCT---CAGTAGAAGTTT-GGTCA---CCTTG--GCTTTCTT
i calJac3.chr10             I 92 C 0
s saiBol1.JH378378              75682 143 -    125141 TTGGGCACTAGGACTGCATGCAA-CAGCTGCTCCT---------------------------------C----TGCCCAC-TCCCATGTTAGAGGGATCTGTTTCCAGCCAGCA-GGG-CAGTGTGGGTGACTC---CAGGAGGAC-TCCAGGGCCCT---CAGTAGGAGTTT-GGTCA---CCTTG--GCTTTCTT
i saiBol1.JH378378          I 135 C 0
s cebCap1.NW_016107334v1        84912 143 +  11725426 TTGGGCACTAGGACTGCATGCAG-TAGCTGCTCCT---------------------------------C----TGCCCAC-TCCCATGTTAGAGGGATCTGTTTCCAGCCAGCA-GGG-CAGTCTGGGCGACTC---CAGGGGGAT-TCCAGGGTCCT---CAGTAGAAGTTC-GAGGA---CCTTG--GCTTTCTT
i cebCap1.NW_016107334v1    I 69 C 0
s aotNan1.NW_018503093v1       677802 143 +    730879 TTGGGCACTAGGACTGCGTGCAG-CAGCTGCTCCT---------------------------------C----TGCCTAC-TCCCATGTTAGGGGGATCTGTTTCCCGCCAGTA-GGGACAGTCTGGGTGACTC---CAGGAGGAT-TTCAGGGTCCT---CAGTAGAAGTTT-GGTCA---CCTTG--GC-TTCTT
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5774994 127 -  36342412 CGGGACATAAGGGCTACATCCCG-TG-----TCAT---------------------------------T----TGCCTAC-TCTCATGTTAGAGGGATCCATTTCCAGCCAGCACAGG-TGGTCCGGCTGATTC---CAGGAGGA--------ACCCT---TAGACTCAGTCT-A--------CCTG--GCTTTGTA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58206990 146 +  91889043 TGGGGCAAAAGGA-TGGGTCCCA-GAGCTGCTCAT---------------------------------T----TGCTGAC-ACCCGCTTTAGGGGG-TCTGGTTTCCACCAGCATAGG-TGGTCGGGGTGATTTGGGCAGAGGGGTCCCCAGGGCCCT---CAGCAGGAGTCT-AGTCT---CAGAG--GCTGTGTT
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             833726 150 +   1727078 TGGGGTGAGCAGAGAGGGGCCAT-CAGCTGCTCAT---------------------------------T----TGCCCAC-CCCCAGGGTAGAGGGCTCCATTTCCAGCAGGTACAGG-TAGT--GGGTGATTC---TAGCATGCC-CTAGGGGCTCTCTGCGGGAGGAGTCT-GGTCAATGCCCTGCCGCCTTCTT
i dasNov3.JH579681          C 0 I 373
e mm10.chr9                  90184404 424 + 124595110 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   2 + 171882078 I

a score=148824.000000
s hg38.chr15_KI270850v1_alt     24881 23 +    430880 CTCCGCAGCTCTGGGCAGAGTCA
s panTro5.chr15              23355837 23 -  83230942 CTCCACAGCTCTGGGCAGGGCCG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2541002 23 +   2806052 CTCCGCAGCTCTGGGCAGAGTCA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22714014 23 - 121039945 CTCCGCAGCTCTGGGCAGGGCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113309791 23 - 169600520 CTCTGCAGCTCTGGGCAGAGCCA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3907099 23 +   4820037 CTCTGCAGCTCTGGGCAAAGCCA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9769576 23 +  10730278 CTCTGCAGCTCTGGGCAGAGCCA
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4016955 23 +   5013933 CCCTGCACCTCTGGGCAGAGCCA
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113738130 23 - 132174527 CTCCGCAGCTCTGGGCACAGCCA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              75825 23 -    125141 CTCTGCAGCTCTGGGCACAGCCA
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        85055 23 +  11725426 CTCTGCAGCTCTGGGCACAGCCA
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       677945 23 +    730879 CTCCGCAGCTCTGGGCACAGCCA
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5775121 20 -  36342412 TCCTGCGTCTCTGGG---AGCCA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58207136 23 +  91889043 CCCTGCAGCTCTGGGTGGGGCAA
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90184404 424 + 124595110 I
e dasNov3.JH579681             833876 373 +   1727078 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I

a score=950073.000000
s hg38.chr15_KI270850v1_alt     24904 152 +    430880 GGGGCCTGTCACTGGCCAGGGGACTTAGGAGACCACACAGACCACCCACCCCACCCTGGGTCTCCCAGCTGCCAGGCCCCCTCCTCTGAAATCTGGGCTTCGGGATTCCATGGTCTGATCCACCCTCCTAGCCTCTCTCCACACCTGTCTTC
s panTro5.chr15              23355860 151 -  83230942 GGGGCCTGTCACTGGTCAGGGGACTTAGGAGACCATGCAGA-CACCCACTCCACCCTGGATCTCCAAGCTGTCAGGCCCCCTCCTCTGAAATCAGGGCTTCGGGAGTCCATGGTCTGATCCACCCTCCCAGCCTCTCTCCACACCTGCCTTC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2541025 151 +   2806052 GGGGCCTGTCACTGGTCAGGGGACTTAGGAGACCACACAGACCACCCACCCCACCCTGGGTCTCCCAGCTGCCAGG-CCCCTCCTCTGAAATCTGGGCTTCGGGATTCCATGGTCTGATCCACCCTCCCAGCCTCTCTCCACACCTGTCTTC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22714037 151 - 121039945 GGGGCCTGTCACTGGTCAGGGGACTTAGGAGACCATGCAGA-CACCCACTCCACCCTGGGTCTCCCAGCTGCCAGGCCCCCTCCTCTGAAATCTGAGCTTTGGGATTCCATGGTCTGATCCAGCCTCCAAGCCTCTCTCCACACCTGCCTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113309814 152 - 169600520 GGGGCTTGTCACTGGCCAGGGGACTTAGGAGACCACACAGACCACCCACCCCACCCTGGGTCTCCCAGCTGCCAGGCCCGCTCCTCTGAAATCTGGGTTTTGGGATTCCATGGTCTGATCTACCCTCCCAGCCTCTCTCCACACCTGCCTTC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3907122 152 +   4820037 GGGGCTTGTCACTGGCCAGGGGACTTAGGAGACCACACAGACCACCCACCCCACCCTGGGTCTCCCAGCTGCCAGGCCCACTCCTCTGAAATCTGGGTTTTGGGATTCCATGGTCTGATCTACCCTCCCAGCCTCTCTCCACACCTGCCTTC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9769599 152 +  10730278 GGGGCTTGTCACTGGCCAGGGGACTTAAGAGACCACACAGACCACCCACCCCACCCTGGGTCTCCCAGCTGCCAGGCCCGCTCCTCTGAAATCTGGGTTTTGGGATTCCATGGTCTGATCTACCCTCCCAGCCTCTCTCCACACCTGCCTTC
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4016978 152 +   5013933 GGGGCCTGTCACTGGCCAGGGGACTTAGGAGACCACACAGACCACCCACCCCACCCTGGGTCTCCCAGCTGCCAGGCCCCCTCCTCTGAAATCTGGGTTTTGGGATTCCATGGTCTGATCTACCCTCCCAGCCTCTCTCCACACCTGCCTTC
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113738153 150 - 132174527 AGGGCCTGTCACTGGCCAGGGGACTTAGGAGACCACACAGACTGCTCAC-CCAGCCTGGATCTCCCAGCTGCCAGG-CCCCTCCTCTGAAATCTGGGCTTTGGGATCCTTCGGTCTGAGCCACCCTCCCAGCCTCGCCCCACACCTGCCTTC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              75848 151 -    125141 GGGACCTGTCACTGGCCAGGGGACTTAGGAGACCACACAGACTGCCCAC-CCAGCCTGGATCTCCCAGCTGCCAGGCCCCCTCCTCTGAAATCTGGGCTTTGGGGTCCTACGGTCTGAGCCACCCTCCCAGCCTCACCCTACACCTGCCTTG
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        85078 151 +  11725426 GGGGCCTGTCACTGACCAGGGGACTTAGGAGACCACACAGACCGCCCAC-CCAGCCTGGATCTCCCAGCTGCCAGGCCCCCTCCTCTGAAATCGGGGCTTTGGGGTCCTACAGTCTGAGCCACCCTCCCAGCCTCGCCCCACACCTGCCTTC
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       677968 150 +    730879 GGGGCCTGTCACTGGCCAGGGGACTTAGGAGACCACACGGACTGCCCAC-CCAGCCTGGATCTCCCAGCTGCCAGGCCCCCTCCTCTGAAATCTGGGCTTTGGTATCCCGCGGTCTGAG-CACCCTCCCAGCCTCGCCCCACACCTGCCTTC
i aotNan1.NW_018503093v1    C 0 I 11
s otoGar3.GL873530            5775141 141 -  36342412 GGGGTCTGTCACTGGCTAGGGGATTTTAGAGACCATACAAAACACCCACCCCTCTCCTTGCCTCCCAGCTTCCAGG---------CTAAAACCTGGAATCTAGGATTCCAGGGCCTGG--CACCCCCCCAGCCTGGCCCCATACCTGCTGCC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58207159  94 +  91889043 GTGGC------------------CCTAGGCAACCCCACAGACCATCCACCCCACCCTGGGCCCCACAGC-----------CTCCCTCAGAGGCTGA------------------CTG-------CCCCCAGCGTTGCCCCCTACCTCC----
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             834249 118 +   1727078 GGGTCCTGCCACTGGGCAGGGGACTTAGGAGAGCACACAGACCATCCAC-----CCTGTGACTTACAGCCCCTAGACCTCCACCTCTG-AATCTGGA---------------------------CTCCTAGCCTCTC-CCACATCTGCCTGC
i dasNov3.JH579681          I 373 C 0
e mm10.chr9                  90184404 424 + 124595110 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   2 + 171882078 I

a score=45007.000000
s hg38.chr15_KI270850v1_alt     25056 14 +    430880 AGCACTCTTGGCCC
s panTro5.chr15              23356011 14 -  83230942 AGTGGTCTTGGCCC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2541176 14 +   2806052 AGCACTCTTGGCCC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22714188 14 - 121039945 AGCAGTCTTGGCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113309966 14 - 169600520 AGCGGTCTTGGCCC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3907274 14 +   4820037 AGCGGTCTTGGCCC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9769751 14 +  10730278 AGCGGTCTTGGCCC
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4017130 14 +   5013933 AGCGGTCTTGGCCC
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113738303 13 - 132174527 AGTGGTACTGGCT-
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              75999 13 -    125141 GGCGGTACTGGCT-
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        85229 13 +  11725426 GGCGGTACTGGCT-
i cebCap1.NW_016107334v1    C 0 C 0
s otoGar3.GL873530            5775282 14 -  36342412 AGCAGCGCTGGCCT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58207253 11 +  91889043 ---CGCCCTGGCTG
i canFam3.chr3              C 0 I 3
s dasNov3.JH579681             834367 13 +   1727078 AGCGGCTTAGCCC-
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       678118 11 +    730879 I
e mm10.chr9                  90184404 424 + 124595110 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I

a score=254503.000000
s hg38.chr15_KI270850v1_alt     25070 41 +    430880 TGTTTCCTGACCCTTTCGTGTTCT-CCCAGCCTCTCCACATC
s panTro5.chr15              23356025 41 -  83230942 TGTTTCCTGACCCTTTCGTGTTCT-CCCAGCCTCTCCACATC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2541190 41 +   2806052 TGTTTCCTGACCCTTTCGTGTTCT-CCCAGCCTCTCCACATC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22714202 41 - 121039945 TGTTTCCTGACCCTTTCGTGTTTT-CCCAGCCTCTCCACATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113309980 41 - 169600520 TGTTTCCAGACCCTTTCATGTTCT-CCCAGCCTCTCCACATC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3907288 41 +   4820037 TGTTTCCAGACCCTTTCATGTTCT-CCCAGCCTCTCCACATC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9769765 41 +  10730278 TGTTTCCAGACCCGTTCATGTTCT-CCCAGCCTCTCCACATC
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4017144 41 +   5013933 TGTTTCCAGACCCTTTCATGTTCT-CCCAGCCTCTCCATATC
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113738316 39 - 132174527 --GTTCCTGACTCTTTCATGTTCT-TCCAGCCTCTCCACATC
i calJac3.chr10             C 0 I 2
s saiBol1.JH378378              76012 39 -    125141 --GTTCCTGCCTCTTTCATGTTCT-TCCAGCCTCTCCACATC
i saiBol1.JH378378          C 0 I 2
s cebCap1.NW_016107334v1        85242 39 +  11725426 --GTTCCTGACTCTTTCATGTTCT-TCCAGCCTCTCCACATC
i cebCap1.NW_016107334v1    C 0 I 2
s aotNan1.NW_018503093v1       678129 40 +    730879 -TGTTCCCGACTCTTTCGTGTTCT-TCCAGCCTCTCCACATC
i aotNan1.NW_018503093v1    I 11 I 23
s otoGar3.GL873530            5775296 42 -  36342412 TGCTTCCTGACCCCATCACCTTCTCCCCAGCCTCTCTGCACC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58207267 34 +  91889043 TGGTGGCCTACTCTGTC---TTCT-TCCAGTCTGTCTT----
i canFam3.chr3              I 3 C 0
s dasNov3.JH579681             834380 39 +   1727078 TGGTTCTTGATCCTTCCATCCTCT-CACAGCCTTTCTACC--
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90184404 424 + 124595110 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I

a score=-427.000000
s hg38.chr15_KI270850v1_alt     25111 12 +    430880 --TCGGAGTGTC--TC
s panTro5.chr15              23356066 12 -  83230942 --TCGGAGTGTC--TC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2541231 12 +   2806052 --TCGGAGTGTC--TC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22714243 12 - 121039945 --TCGGAGTGTC--TC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113310021 10 - 169600520 --TCGGAGTGTC----
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3907329 10 +   4820037 --TCGGAGTGTC----
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9769806 10 +  10730278 --TCGGAGTGTC----
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012114844v1      4017185 12 +   5013933 --TCGGAGTGTCTC--
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113738357  9 - 132174527 -----TAGTGTT--TC
i calJac3.chr10             I 2 I 3
s saiBol1.JH378378              76053  9 -    125141 -----TCGCGTT--TC
i saiBol1.JH378378          I 2 I 3
s cebCap1.NW_016107334v1        85283  9 +  11725426 -----TTATGTT--TT
i cebCap1.NW_016107334v1    I 2 I 3
s otoGar3.GL873530            5775338 12 -  36342412 --CTGTGGTATC--TC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58207301 12 +  91889043 --GTGGTGTGTC--CT
i canFam3.chr3              C 0 I 1
s dasNov3.JH579681             834419 12 +   1727078 CTGTGGGGCCTC----
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       678169 23 +    730879 I
e mm10.chr9                  90184404 424 + 124595110 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3897438 670 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I

a score=168621.000000
s hg38.chr15_KI270850v1_alt     25123 23 +    430880 TTTCTCTCCCTGCTGG-ACTCCAG
s panTro5.chr15              23356078 23 -  83230942 TTTCTCTCCCTGCTGG-ACTCCAG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2541243 23 +   2806052 TTTCTCTCCCTGCTGG-ACTCCAG
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22714255 23 - 121039945 TTTCTCTCCCTGCTGG-ACTCCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113310031 23 - 169600520 TTTCTCTCCCTGCTGG-ACTCCAG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3907339 23 +   4820037 TTTCTCTCCCTGCTGG-ACTCCAG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9769816 23 +  10730278 TTTGTCTCCCTGCTGG-ACTCCAG
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3898108 23 +   4030761 TTTCTCTCCCTGCTGG-ACTCCAG
i manLeu1.NW_012102632v1    I 670 C 0
s colAng1.NW_012114844v1      4017197 23 +   5013933 TTTCTCTCCCTGCTGG-ACTCCAG
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113738369 23 - 132174527 CTCCTCTCCCTTCTGG-ACTCCGG
i calJac3.chr10             I 3 C 0
s saiBol1.JH378378              76065 23 -    125141 CTCCTCTCCCTGCTGG-ACTCCGG
i saiBol1.JH378378          I 3 C 0
s cebCap1.NW_016107334v1        85295 23 +  11725426 CTCCTCTCCCTGCTGG-ACTCTGG
i cebCap1.NW_016107334v1    I 3 C 0
s otoGar3.GL873530            5775350 20 -  36342412 ---CTCTCCCTGCTAG-ACACCAG
i otoGar3.GL873530          C 0 I 1
s canFam3.chr3               58207314 23 +  91889043 TGTCCTTTCCTGTCAG-AGCCCAG
i canFam3.chr3              I 1 C 0
s dasNov3.JH579681             834431 24 +   1727078 CTTCCCTACCTGCCAGTACCCCAG
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       678169 23 +    730879 I
e mm10.chr9                  90184404 424 + 124595110 I
e panPan2.chr15              23049698 3017 -  99763055 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I

a score=188262.000000
s hg38.chr15_KI270850v1_alt     25146 26 +    430880 GATCCATCACCTTTGCCCTTCTTCCC
s panTro5.chr15              23356101 26 -  83230942 GATCCATCACCTTTGCCCTTCTTCCC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2541266 26 +   2806052 GATCCATCACCTTTGCCCTTCTTCCC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22714278 26 - 121039945 GATCCATCACCTTTGCCCTTTTTCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113310054 26 - 169600520 CATCCATCACCTTTGCCCTTCTTCCC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3907362 26 +   4820037 CATCCATCACCTTTGCCCTTCTTCCC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9769839 26 +  10730278 GATCCATCACCTTTGCCCTTCTTCCC
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3898131 26 +   4030761 GATCCATCACCTTTGCCCTTCTTCCC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4017220 26 +   5013933 GATCCATCACCTTTGCTCTTCTTCCC
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113738392 25 - 132174527 GATCCGTCACCTCTGCT-TTCTTCCC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              76088 25 -    125141 GATTTATCACCTCTGCT-TTCTTCCC
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        85318 25 +  11725426 GATTTATCACCTCTGCT-TTCTTCCC
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       678192 25 +    730879 GATCCGTCACCTCTGCC-TTCTTCCT
i aotNan1.NW_018503093v1    I 23 C 0
s otoGar3.GL873530            5775371 25 -  36342412 GATCTGTC-CCCCTACCCTCCTTCTC
i otoGar3.GL873530          I 1 C 0
s canFam3.chr3               58207337 22 +  91889043 TGCCCATCACCTCTGTCCTTCT----
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             834455 26 +   1727078 GATCCATCGCCTCTGCCTCCTCTCCC
i dasNov3.JH579681          C 0 I 5973
e mm10.chr9                  90184404 424 + 124595110 I
e panPan2.chr15              23049698 3017 -  99763055 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I

a score=68674.000000
s hg38.chr15_KI270850v1_alt     25172 16 +    430880 TGTGCGA-CC-----CCCTGCC
s panTro5.chr15              23356127 16 -  83230942 TGTGCAA-CC-----CCCTGCC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2541292 16 +   2806052 TGTGCGA-CC-----CCCTGCC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22714304 16 - 121039945 TGTGCGA-CC-----CCCCGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113310080 16 - 169600520 TGTGCAA-CC-----CCCCGCC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3907388 16 +   4820037 TGTGCAA-AC-----CCCCGCC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9769865 16 +  10730278 TGTGCAG-CC-----CCCCGCC
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3898157 16 +   4030761 TGTGCAG-CC-----CCCCGCC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4017246 17 +   5013933 TGTGCAACCC-----CCCCGCC
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113738417 15 - 132174527 GGTGC-A-GT-----CCCTGCC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              76113 15 -    125141 TGTGC-A-AT-----CTCTGCT
i saiBol1.JH378378          C 0 C 0
s cebCap1.NW_016107334v1        85343 15 +  11725426 TGTGC-A-AT-----CCCTGCC
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       678217 16 +    730879 TGTGCAA-AC-----CCCTGCC
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5775396 21 -  36342412 TGTGCTT-CCTCTAGCCCTGCC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58207359  8 +  91889043 -----GA-CC-----CTCT---
i canFam3.chr3              C 0 C 0
e mm10.chr9                  90184404 424 + 124595110 I
e dasNov3.JH579681             834481 5973 +   1727078 I
e panPan2.chr15              23049698 3017 -  99763055 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I

a score=205117.000000
s hg38.chr15_KI270850v1_alt     25188 33 +    430880 TGTCCCAATCAGGACTGTATGCTCATCCCAGCC
s panTro5.chr15              23356143 33 -  83230942 TGTCCCAATCAGGACTGTATGCTCATCCTGACC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2541308 33 +   2806052 TGTCCCAATCAGGACTGTATGCTCATCCCAGCC
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22714320 33 - 121039945 TGTCCCAATCAGGACTGTATGCTCATCCTGGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113310096 33 - 169600520 TGTCCCAGTCAGGACTGTATGCTCATCCTGGCC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3907404 33 +   4820037 TGTCCCAGTCAGGACTGTATGCTCATCCTGGCC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9769881 33 +  10730278 TGGCCCAGTCAGGACTGTATGCTCATCCTGGCC
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3898173 33 +   4030761 TGTCCCAGTCAGGACTGTATGCTCATCCTGGCC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4017263 33 +   5013933 TGTCCCAGTCAGGACTGTATGCTCATCGTGTCC
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113738432 32 - 132174527 TGGCCCACCCAGCACTGTG-GCTCAGCCTGGTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378378              76128 32 -    125141 TAGCCCACCCAGGACTGTG-GCTCATCCTAGCC
i saiBol1.JH378378          C 0 M 2208
s cebCap1.NW_016107334v1        85358 32 +  11725426 TGGCGCACCCAGGACTGTG-GCTCATCCTGGCC
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       678233 32 +    730879 TGGCCCACCCAGGACTGTG-GCTCATCCTGGCC
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5775417 33 -  36342412 TGCCCTAACCATGAGCATATGCTCATCTTGGCT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58207367 11 +  91889043 --------------------GCTCATC-TGGC-
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             840454 33 +   1727078 TGCACCAACCGGGACCCTCTGCTCATCCTGGTT
i dasNov3.JH579681          I 5973 C 0
e mm10.chr9                  90184404 424 + 124595110 I
e panPan2.chr15              23049698 3017 -  99763055 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I

a score=295458.000000
s hg38.chr15_KI270850v1_alt     25221 47 +    430880 ATCTGGCCTGGCACCACCTACCCTGAGTCCACCCAGACTGGAGAACT
s panTro5.chr15              23356176 47 -  83230942 CTCTGTCCTGGCGCCACCTGCCCTGAGGCCACCCAGACTGGAGAACT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2541341 47 +   2806052 ATCTGGCCTGGCACCACCTACCCTGAGTCCACCCAGACTGGAGAACT
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22714353 47 - 121039945 CTCTGTCCTGGCGCCACCTGCCCTCAGGCCACCCAGACTGGAGAACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113310129 47 - 169600520 CTCTGGCCTGGCACCACCTGCCCTGAGGCCACCCAGACTATAGAACT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3907437 47 +   4820037 CTCTGGCCTGGCACCACCTGCCCTGAGGCCACCCAGACTATAGAACT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9769914 47 +  10730278 CTCTGGCCTGGCACCACCTGCCCTGAGGCCACCCAGACTATAGAACT
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3898206 47 +   4030761 CTCTGGCCTGGCACCACCTGCCCTGAGGCCACCCAGACTATAGAACT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4017296 47 +   5013933 CTCTGGCCTGGCACCACCTACCCTGAGGCCACCCAGACTGGAGAACT
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113738464 45 - 132174527 -CTTGGCCTGGCACCACCTGCCCTGAGACCTCCCAGATGGGAG-ACT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107334v1        85390 46 +  11725426 CTCGGGCCTGGCACTACCTGCCCTGAGACCTCCCAGACGGGAG-ACT
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       678265 46 +    730879 CTCGGGCCTGGCACCACCTGCCCTGAGACCTCCCAGATGGGAG-ACT
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5775450 47 -  36342412 TGCTGGCCTAGCACCAGCTGCCCTCAGGCCTCCTAGCCTGGTGAACT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               58207378 47 +  91889043 CCCCAACCTTGTACCAGCCACCCTCTAGCACCCCAGCCTGGAAAACT
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             840487 46 +   1727078 CCCGGACTTGGCACTGCCCTCCTTCAAGCCCTCCAGACTGGAAAAT-
i dasNov3.JH579681          C 0 C 0
e mm10.chr9                  90184404 424 + 124595110 I
e panPan2.chr15              23049698 3017 -  99763055 I
e chlSab2.chr29               1318019 12 +  24206276 I
e macFas5.chr7               61589937  2 + 171882078 I
e saiBol1.JH378378              76160 2208 -    125141 M

a score=3241551.000000
s hg38.chr15_KI270850v1_alt     25268 594 +    430880 GGAGGGATTTTGCCTCCCCATCTCCCCTGCCTGGCTAGAGG--------------CCCCAGGTCCCATGGGTCCTGCCTCCTTCCA-TGCTTCTGCCCAAGTCGTGGCTGCCTGGGTCATC--CCC-AGCCCC---------GCATGT-------CTGCATGGCTCAATTCTCCCCAG---------CCACTGCTGCCCCACA--GAGGGCC--CCAAACC-----------------------TTCCTCCAGGAC--AGCAATGAGCT-GTGG-GTGGG-CTGGTCAGCATGCCAGGGCACTCCTGCTGCTAAG-----CCGTTGTAGTGGCCGCCTAAGGTCCAGCAGGTACAGCAGGCTGGTCACTGG-TCCCAGAAGCAGTAG-CATGCCTGAGGGCTGTACAGAGTGAGGCAGGGGCAGAAGCAGGTGCCAGCTGGGCCTGGGCCGCCCTCCCCAGGG-CCC--C---GGACTCCACGCTCGCTGCCTCGTGGTG----GTCTG----GGCAGCCTTGTCTTCGCCACACCGCAGCAGCAGGAGCGTGTGGTGGACACAGATGGCACCTGCTCGTGTCTGCCAGTTTCCCCGCCACCGCTGCCAGGGAATGCCAGCTGGAGGAAGGCAGGAGTAGATAGGGTATGACAGAGGCTGGAGGCCAGCCCTGTTGGGGAGTGGGGGAAA
s panTro5.chr15              23356223 606 -  83230942 GGAGGGTTTGTGCCTCCCCATCTCCTCTGCCTGGCTAGAGG--------------CCCCAGGTCCCGCGGGTCCTGCCTCCCTCCATTGTTTCTGCCCAAGTCGTGGCTGCCTGGGTCATC--CCC-AGCCCT---------GCAAGT-------CTGTGTGGCTCAATTCTCCCCAG---------CCACT-CTGCCCC-CA--GAAGGCC--CCAAACC--------------TTCCTCCAGTTCCTCCAGGAC--AGCAATGAGCC-ATGG-GCAGC-GTGGTCAGCATGCCAGGGCACTCCTGCTGCTAAG-----CCATAGTGGTGGCCACCTAAGGTCCAGCAGGGGCAGCAGGCTGGTCACTGG-TCCCAGAAGCAATAG-CATGCCTGAGGGTTGTACAGAGTGAGGCAGGGGCAGAAGCGGGTGCCAGAAGGGCCTGGGCCACCCTCCCCAGGG-TCC--C---TGCTTCCATGCTTCCTGCCTCATGGTGTTGTGTCTG----GGCAGCCTTGTCTTCGCCACACCGCAGCAGCAGGAGTGTGTGGTGGACACAGATGGCGCCTGCTTGTGTCTGCCAGTTTCCCTGCTACCGCTGCCAGGGAATGCCAGCTGGAGGAAGGCAGGAGTAGATAGGGTATGACAGAGGCCGGAGGCCAGCCCTGTCGGGGGGTGGGGGAAA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2541388 594 +   2806052 GGAGGGATTTTGCCTCCCCATCTCCCCTGCCTGGCTAGAGG--------------CCCCAGGTCTCATGGGTCCTGCCTCCTTCCA-TGCTTCTGCCCAAGTCGTGGCTGCCTGGGTCATC--CCC-AGCCCC---------GCATGT-------CTGCATGGCTCAATTCTCCCCAG---------CCACTGCTGCCCCCCA--GAGGGCC--CCAAACC-----------------------TTCCTCCAGGAC--AGCAATGAGCT-GTGG-GCGGG-CTGGTCAGCATGCCAGGGCACTCCTGCTGCTAAG-----CCGTTGTAGTGGCTGCCTAAGGTCCAGCAGGTAGAGCAGGCTGGTCACTGG-TCCCAGAAGCAATAG-CATGCCTGAGGGCTGTACAGAGTGAGGCAGGGGCAGAAGCAGGTGCCAGCCAGGCCTGGGCCGCCCTCCCCAGGG-CCC--C---GGACTCCATGCTCGCTGCCTCGTGGTG----GTCTG----GGCAGCCTTGTCTTCGCCACACCGCAGCAGCAGGAGCGTGTGGTGGACACAGATGGCACCTGCTCGTGTCTGCCAGTTTCCCCACCACCGCTGCCAGGGAATGCCAGCTGGAGGAAGGCAGGAGTAGATAGGGTATGACAGAGGCTGGAGGCCAGCCCTGTTGGGGAGTGGGGGAAA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22714400 607 - 121039945 GGAGGGTTTGTGCGTCCCCATCTCCTCTGCCTGGCTAGAGG--------------CCCCAGTTCCCACAGGTCCTGCCTCCCTCCATTGCTTCTGCCCAAGTCGTAGCTGCCTGGGTCATC--CCC-AGCCCT---------GCATGT-------CTGCGTGGCTCAATTCTCCCCAG---------CCACTGCTGCCCC-CA--GAAGGCC--CCAAACC--------------TTCCTCCAGTTCCTTCAGGAC--AGCAATGAGCC-ATGG-GCAGG-GTGGTCAGCATGCCAGGGCACTCCTGTTGCTAAG-----CTATAGTGGTGCCCGCCTAAGGTCCAGCAGGGGCAGCAGGCTGGTCACTGG-TCCCAGAAGCAATGG-CATGCCTGAGGGTTGTACAGAGTGAGGCAGGGGCAGAGGCGGGTGCCAGAAGGGCCTGGGCTGCCCTCCCCAGGG-TCC--C---TGCTTCCGTGCTCCCTGCCTCATGGTGTTGTGTCTG----GGCAGCCTTGTCTTTGCCACACCACAGCAGCAGGAGTATGTGGTGGATACAGATGGCACCTGCTTGTGTCTGCCAGTTTCCCTGCCACTGCTGCCAGGGAATGCCAGCTGGAGGAAAGCAGGAGTAGATAGGGTATGACAGAGGCCGGAGGCCAGCCCTGTCGGGGGGTAGGGGAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113310176 584 - 169600520 GGAGGGTTTGTGCCTCCCCATGTCCCCTGCCTGGCTAGAGG--------------CCCCAGGTCCCACGGGTCCTGCCTCCCTCCATTGCTTCTGCCCAAGTCGTGGCTGCCTGGGTCATC--CTC-AGCCCT---------GCATGT-------CTGCGTGGCTCAATTCTCCCCAG---------CCACTGCTGCCCC-CA--GAAGGCC--CCAAACC-----------------------TTCCCCCAGGAC--AGCAGTGAGCC-ATAG-GTGGG-GTGGTCAGCGGGTTAGGGCGCTCCTGCTGCTAAG-----CCATAGTGGTGCCCGCCTAAGTTCCAGCAGGGGCAGCAGGCTGGTCACCGA-TCCCAGAAACAATAG-CATGGCCAAGGGCTGTACAGAGTGAGGCAGAGGCAGAAGTGAGTGCCAGCCGGGCCTGGGCTGCTCTCCCCAGGG-CCC--C---CACCTCTGTGCTCCCTGCCTCGTGGTGTTGTGTCTG----GGCAGCCTTGTCCTCACCAGACTGCAGCAGCAGGAGTGTGTGGTGGACACAGATGGCTCCTGCTTGTGTCTGCCAGTTTCCCTGCCACCACTGCCAGGGAATGCTGGCTGGAGGAAGACAGGAGT--------------GGAGGCCGGAGGCCAGCCCTGTCAGTGGGTGGGGGAAA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3907484 584 +   4820037 GGAGGGTTTGTGCCTCCCCATGTCCCCTGCCTGGCTAGAGG--------------CCCCAGGTCCCATGGGTCCTGCCTCCCTCCATTGCTTCTGCCCAAGTCGTGGCTGCCTGGGTCATC--CTC-AACCCT---------GCATGT-------CTGCGTGGCTCAATTCTCCCCAG---------CCACTGCTGCCCC-CA--GAAGGCC--CCAAACC-----------------------TTCCCCCAGGAC--AGCAGTGAGCC-ATAG-GTGGG-GTGGTCAGCGGGTTAGGGCACTCCTGCTGCTAAG-----CCATAGTGGTGCCCGCCTAAGTTCCAGCAGGGGCAGCAGGCTGGTCACCGA-TCCCAGAAACAATAG-CATGGCCAAGGGCTGTACAGAGTGAGGCAGAGGCAGAAGTGAGTGCCAGCCGGGCCTGGGCTGCTCTCCCCAGGG-CCC--C---CACCTCTGTGCTCCCTGCCTCGTGGTGTTGTGTCTG----GGCAGCCTTGTCCTCACCAGACTGCAGCAGCAGGAGTGTGTGGTGGACACAGATGGCTCCTGCTCGTGTCTGCCAGTTTCCCTGCCACCACTGCCAGGGAATGCTGGCTGGAGGAAGACAGGAGT--------------GGAGGCCGGAGGCCAGCCCTGTCGGTGGGTGGGGGAAA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9769961 597 +  10730278 GGAGGGTTTGTGCCTCCCCATGTCCCCCGCCTGGCTAAAGG--------------CCCCAGGTCCCACGGGTCCTGCCTCCCTCCGTTGCTTCTGCCCAAGCCGTGGCTGCCTGGGTCATC--CCC-AGCCCT---------GCATGT-------CTGCGTGGCTCAATTCTCCCCAG----------CACTGCTGTCCC-CA--GAAGGCC--CCAAGCC-----------------------TTCCTCCAGGAC--AGCAGTGAGCC-ATAG-GTGGG-GTGGTCAGCGGGTTAGGGCACTCCTGCTGCTAAG-----CCATAGTGGTGTCTGCCTAAGGTCCAGCAGGGGCAGCAGGCTGGTCACCGA-TCCCAGAAGCAACAG-TATGCCCAAGGGCTGTACAGAGTGAGGCAGGGTCAGAAGTGAGTGCCAGCCGGGCCTGGGCTGCTCTCCCCAGGG-CCC--C---CACCTCTGTGCTCCCTGCCTCGTGGTGTTGTGTCTG----GGCAGCCTTGTCTTCACCAGACTGCAGCAGCAGGAGTGTGTGGTGGACACAGATGGCGCCTGCTCGTGTCTGCCAGTTTCCCTGCCACCACTGCCAGGGAATGCTGGCTGGAGGAAGGACGGAGTAGATAGGGTATGACAGAGGCCGGAGGCCAGCCCTGTCGGTGGGTGGGGGAAA
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3898253 584 +   4030761 GGAGGGTTTGTGCCTCCCCATGTCCCCCGCCTGGCTAGAGG--------------CCCCAGGTCCCACGGGTCCTGCCTCCCTCCGTTGCTTCTGCCCCAGCCGTGGCTGCCTGGGTCATC--CCC-AGCCCT---------GCATGT-------CTGCGTGGCTCAATTCTCCCCAG---------CCACTGCTGCCCC-CA--GAAGGCC--CCAAACC-----------------------TTCCTCCAGGAC--AGCAGTGAGCC-ATAG-GTGGG-GTGGTCAGCGGGTTAGGGCACTCCTGCTGCTAAG-----CCATAGTGGTGCCTGCCTAAGGTCCAGCAGGGGCAGCAGGCTGGTCACCCA-TCCCAGAAGCAATAG-TATGCCCAAGGGCTGTACAGAGTGAGGCAGGGTCAGAAGTGGGTGCCAGCCGGGCCTGGGCCGCCCTCCTCAGGG-CCC--C---CACCTCTGTGCTCCCTGCCTCGTGGTGTTGTGTCTG----GGCAGCCTTGTCTTCACCAGACTGCAGCAGCAGGAGTGTGTGGTGGACACAGATGGCGCCTGCTCGTGTCTGCCGGTTTCCCTGCCACCACTGCCAGGGAATGCTGGCTGGAGGAAGACGGGAGT--------------GGAGGCCGGAGGCCAGCCCTGTCGGTGGGTGGGGGAAA
i manLeu1.NW_012102632v1    C 0 I 1
s colAng1.NW_012114844v1      4017343 584 +   5013933 GGAGGGTTTGTGCCTCCCCATCTCCCCTGCCTGGCTAGAGG--------------CCCCAGGTCCCACGGGTCCTGCCTCCCTCCATTGCTTCTGCCCAAGCCGTGGCTGCCTGGGTCATT--CCC-AGTCCT---------GCATGT-------CTGCGTGGCTCAATTCTCCCCAG---------CCACTGCTGCCGC-CA--GAAGGCC--CCAAACC-----------------------TTCCTCCAGGAC--AGCAGTGAGCC-ATAG-GTGGG-GTGGCCAGCGGGTTAGGGCACTCCTGCTGCTAAG-----CCGTAGTGGTGCCCGCCTAAGGTCCAGCAGGGGCAGCAGGCTGGTCACCGA-TCCCAGAAGCAATAG-TATGTCCAAGGGCTGTACAGAGTGAGGCAGAGGCAGAAGTGAGTGCCAGCTGGGCCTGGGCTGCCCTCCCCAGGC-TCC--C---CACCTCTGTGCTCCCTGCCTTGTGGTGTTGTGTCTG----GGCAGCCTTGTCTTCACCAGACTGCAGCAGCAGGAGTGTGTGGTGGACACACATAGTGCCTGCTCGTGTCTGCCAGTTTCCCTGCCACCACTGCCAGGGAATGCTGGCTGGAGGAAGACAGGAGT--------------GGAGGCCGGAGGCCAGCCCTGTCAGGGGGTGGGGGGAA
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113738509 580 - 132174527 GGAGGATTTTTGCCTCCCTATCGCCCCTGCCTGGCTAGAGG--------------CCCCAGGTCCCGTGGGTTATG----TTTCTGTTGTTTCTGCCCAAGTCGTGGCTGCTGGGGTCAT---CTC-AGTCCT---------GATTGT-------CCACGTGGTTCAATTCTCCCCAG----------AACTGCTGCCCC-CA--GAAGGCCC-CCAAACT--------------TTTCTCCAGTTTCTCCAGGAC--AGCAAGGAGCTGAGGG-GCAGG-CTGGTCAGCATGCCAGGGCACTCCTGCTG--------------------------CTAAGGTCCAGCAGGGGCAGCAGGATGGACACTGG-GCCCAGACGCAATAGCCACACCCGAGGGCCATGCAGAGTGAGGCAGGGGCAGAAGTGGGTGCCAGCTGGGCCTGGGCCACCCTCCCCAGGGCCCC--C---CACCTGCTTGCCTCCTGCCTT---GTGTTGTGTCTGGGTGGGCAGCCTTGTCTTCACCACACAGAGGCAGCAGGAGTGTGTGGTGGGTACAGATCGTGCCTGCTCTCGTCTGCCTTGTTCCTCACCACCGCTGCCAGGGAATGC-GGCTGGAGGAAGGCGGGAGTAGATAGGGTGTGACAGAGGCT-AAGGCCAGCCCTGCAGGGGGT-GGGGGA--
i calJac3.chr10             C 0 I 2
s cebCap1.NW_016107334v1        85436 595 +  11725426 GGAGGGTTTGTGCCTCCCCATCGCCCCTGCCTGGCTAGAGG--------------CCCCAGGTCCCGTGGGTCCTGCCTCCCTCTGTTGCTTCTGCCCAAGTCGTGGCTGCCAGGGTCAT---CTC-AGCCCT---------GATTGT-------CTGCGTGGCTCAATTCTCCCCAG----------AACTGCTGCCCC-CA--GAAGGCCCTCTAAACT--------------TTCCTCCAGTTTATCCAGGAC--AGCAAGGAGTTGAGGG-GCGGG-CTGGTCAGTATGCCAGGGCACTCCTGCTGCTAAG-----CTGTAGTGGTGCCAGCCTAAGGTCCAGCAGGTGCAGCAGGATGGACACTGG-GCCCAGACACAATAGCCATGCCCGAGGGCCACGC--AGTGAGGCAGGGCCAGAAGCGGGTGACAGCTGGGCCTGGGCCGCCCTCCCCAGGG-CCC--C---CGCCTGCATGCCCCCTGCCTTATGGTGTTGTGTCTGGGCAGGCAGCCTCGTCTTTGCCACACCGCGGCAGCAGGAGTGTCTGGTGGGTACAGATTGTGCCTGCTCTCGTCTGCCTGGTTCCCCGCCACTGCTGCCAGGGAATGC-GGCTGGAGGAAGGCGGGAGTAGATAGGGTGTGACAGAGGCT-GAGGCCAGTCCTGCAG--------------
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       678311 609 +    730879 GGAGGGTTTGTGCCTCTCCATCGCCCCTGCCTGGCTGGAGG--------------CCCCGGGTCCCGTGGGTCCCGCCTCCCTCTGTTGCTTCTGCCCAAGTCGTGGCTGCCGGGGTCAT---CTC-AGCCCT---------GATTGT-------CCGCGTGGCTCAATTCTCCCTGG----------AACTGCTGCCCC-CA--GAAGGCCC-CCAAACT--------------TTCCTCCAGTTCCTCCAGGAC--AGCTAGGAGTCGAGGG-GTGGG-CTGGTCAGCATGCCAGGGCACTCCTGCTGCTAAG-----CCGTAGTGGTGCCAGCCTAAGGTCCAGCAGGGGCAGCAGGATGGACACTGG-GCCCAGACGCAATAGCCATGCCCGAGGGCCATGCAGAGTGAGGCAGGGGCAGAAGTGGGTGCCAGCTGGGCCTGGGCCACCCTCCCCAGGGCCCC--C---CGCCTGCATGCCCCCTGCCTCGTGGTGTTGTGTCTGGGCGGGCAGCCTCGTCTTCGCCACACTGCGGCAGCAGGAGTGTGTGGTGGGTACAGATGGTGCCTGCTCGCGTCTGCCCGGTTCCCCACCACCGCTGCCAGGGAATGC-GGCTGGAGGAAGGCGGGAGTAGGTAGGGTGTGACAGAGGCT-GAGACCAGCCGTGCAGGGGGCGGGGGGA--
i aotNan1.NW_018503093v1    C 0 I 2
s otoGar3.GL873530            5775497 566 -  36342412 AGAGGGTTTGTTATGCCC----ACCCCTGCCCAGCCATGGG--------------CCTCATGTTCCAAAAGTCCTGCCTCCCTTTGTTGCTTCTGTCCATGTCCTTGCTGCCTGGGTCTTC--CCCAAATCTT---------GACTGT-------CCTCCTGGCTCAATTCTCTATAG---------CCAGTGCTGCCTC-CA--GAAGGTCC-CCAGACC-----------------CTCCAATTCCTTCAGGAC--AGCAGGGAGTC-TTGG-GTAGG-CTGGTCAGCATGCCAGGGCACTCATACTTCTAGGTGTCACCATAGTGGGGCCTGCCCGGGACCCAGCAAGGATAGCAGGATGGTCCTTGG-CCCTGAAGGCAGTTG---TGCCTGGGCGC---ACAGGGCGAGGTGGTGGCAGAA-----CATAGGCCAGGCC--------------------CTT--T---TGCCTCCACACTCCCTGCCTTGTGCCATT--GCCTG----AGCAGTGTTATC-TCACCGCCATGC--CAGCCAGAGTTTGTGGTAGATGCAAGCTGTGCCTGCTTGTGTCTGCC----CTGCTGCTGCTGCTGCCAGGGATCACTGGCTAGAGGAAGGCAGGAGTAGGCAGTGTGTGGCAGG---CAGGGGCCAGCCCCACGGTGGGGGAGGGGTGG
i otoGar3.GL873530          C 0 I 5
s mm10.chr9                  90184828 449 + 124595110 GGATGAATCTTGTCCCCAAGTCTC-----CCTGGCTTGGGGTTGTCCTTATCTCTCACTGTGTCCCACAGATCTTA----GCTCCACTGCTTCCAACCAAGTCCTTTCTGCCTGGTTGA----CCT-AGG--T---------GCCTGT-------TTCTGTGGCTCAATTCTCTTTAG-----------------GCTCT-------GGGCC--CTGGACC--------------CTCCTCCCATTCCAGAAGGACCAAAAAACGAGCC-CCAG-G-AGG-CTGG-CAGCATGCTCCTACTCTCCCGTTTCCAGA------------------------------------------------------------CAACCTCACTGT-CA----------------------------GGGCAGAGATGGTTG--GGTGGGACTTGGGAGGCCATTCCCAAGA-GCC--CTGTTGCCCCCTTGCTCCTTGCCTGCTGGC--------------GGCA-----------------CTACATCGGAAGGAGTGTGTGATGGTCATGGGCTGGCCCTGCTCATGCTGGCCCATTCTCTTGTCA---CTGTCCTGGAATGCTGACTAGGGGAAGGCAGAAG-AAATGGGCAGTA--AGAAG---------------------------------
i mm10.chr9                 I 424 I 2
s canFam3.chr3               58207425 411 +  91889043 GGAGGGTTTCT--------------------------------------------CCCCA-------------------CCCTC-----------------TCCTTGCTGCCTGGGCCAACTACCC-ATCACC---------CCCAAT---------------CTCAGCTCTCACCAG---------CCATTGCTGCCCT-AAGGGAGGTCC--CTAGACA--------------CTTGTCTGACCCCTGCAGGAC--AGCAGTGAGCC-CTGG-GCTGG-TTGGTCAATGTGC-------------------AG-------------------------GGCCTGGCAATGGTGTTGGGATAGACACTGGCCCCCAGAGGCCACAGCTGTGCACAAAGGGCCCATGGACAGATGCGCTGGCAGAGAAGGGC-CAAGCCCAGCCTGGGATGCCCTCCCCAGGG-CCCTTC---TGCATCCGTGTTCCCTGCCTGCTGCTGTGGCGTCTG----GGCAGC------------------------------------------------------------------CCGGGTCCCCTGC----ACTGCCAGGGAAGGCTGGCAGAGGGCAGACAGGAGTGAATGAGGA-----AGTGATAGGGTGGCAGCGCTATC---------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             840533 615 +   1727078 -GAGGGTTTCTTTCTCCAC---CCCCCTGCTTGGCCAGGGG--------------CCCCAAGTCCCCCCCAGTCTGCCTCCC-CCACTGCCTCTGCACAAGTCCTTGCAGCCTGGGTTGAC--CCC-ACCCCTTGCCCCCAGTTCTGTCTTGGCCCTGTATGGCTCAGTTATCCCTAGCCATCCCAGCCACTGCTGCCTC-AG--GGAAACC--CTGGACTACATTCCCCCACCCCTACCCCAATTCCTCCCGAAC--TGCAGTGAGCA-CTGGTGCAGGCCTGGCTGCCATGCTCTGGAATGTC---------A-----CTGCCCTGGTGCTTGCCTAGGGCCCCGCAAGGGCAGCAGGATGGCCCTGGC-TCCCCAGGGCAGTGGGTGTGCACCAGAAGCTCACAGAGTGCGTCAG-GGCAGAGATGGGCCTGAGCT-GGCCTGGGACACCTTCACTAGGG-CCC--T---TTCATCT------CCCGCCTTGTGGCATAGCATCTG----GGTGGTCTTATCTTCA-TGCTGGGCCCCAGCAGGACTTTGTGGTGGACACAGTCTGC-CTGGCTTGCATCTATCTGGTTCCC--CTGCCTCTGCCAGGGAACGTTAGCTGGAGGGAGGCAGGTGTACATAAAGGAGTGACCAGGTGGGGCGCCAACCTTG----GGGGTGAGG----
i dasNov3.JH579681          C 0 C 0
e panPan2.chr15              23049698 3017 -  99763055 I
e chlSab2.chr29               1318019  12 +  24206276 I
e macFas5.chr7               61589937   2 + 171882078 I
e saiBol1.JH378378              76160 2208 -    125141 M

a score=-3999.000000
s hg38.chr15_KI270850v1_alt     25862 2 +    430880 --CA
s panTro5.chr15              23356829 1 -  83230942 --C-
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2541982 2 +   2806052 --CA
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22715007 1 - 121039945 --C-
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012114844v1      4017927 1 +   5013933 --C-
i colAng1.NW_012114844v1    C 0 C 0
s dasNov3.JH579681             841148 2 +   1727078 CA--
i dasNov3.JH579681          C 0 C 0
e aotNan1.NW_018503093v1       678920 2 +    730879 I
e mm10.chr9                  90185277 2 + 124595110 I
e calJac3.chr10             113739089 2 - 132174527 I
e canFam3.chr3               58207836 0 +  91889043 C
e cebCap1.NW_016107334v1        86031 0 +  11725426 C
e otoGar3.GL873530            5776063 5 -  36342412 I
e panPan2.chr15              23049698 3017 -  99763055 I
e manLeu1.NW_012102632v1      3898837 1 +   4030761 I
e chlSab2.chr29               1318019 12 +  24206276 I
e cerAty1.NW_011999477v1      9770558 0 +  10730278 C
e macNem1.NW_012011533v1      3908068 0 +   4820037 C
e macFas5.chr7               61589937 2 + 171882078 I
e rheMac8.chr7              113310760 0 - 169600520 C
e saiBol1.JH378378              76160 2208 -    125141 M

a score=1143825.000000
s hg38.chr15_KI270850v1_alt     25864 138 +    430880 GGGGACAGGCACGGA-TG--C-CCTAGGCTC----TCTCCCAGGG--GAGGGGCTGCTTTCCAGACCTTGCCCTTCCACAGATGACCCGAGGTCTCTGCCT-GG-GTGGGGCCGTCGGAGG--CTCTGTTGTGTCAACTGTGATGTGATATT
s panTro5.chr15              23356830 137 -  83230942 -GGGACAGGCATGGC-TG--C-CCTGGGCTC----TCTCCCAGGG--GAGGGGCTGCTTTCCAGACCTCGCCTTTCCACAGATGACCCGAGGTCTCTGCCT-GG-GTGGGGCCGTCGGAGG--CTCTGTTGTGTCAACTGTGATGTGATGTT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2541984 138 +   2806052 GGGGACAGGCACGGA-TG--C-CCTAGGCTC----TCTCCCAGGG--GAGGGGCCGCTTTCCAGACCTTGCCCTTCCACAGATGACCCGAGGTCTCTGCCT-GG-GTGGGGCCGTCGGAGG--CTCTGTTGTGTCAACTGTGATGTGATGTT
i gorGor5.CYUI01000037v1    C 0 C 0
s nomLeu3.chr6               22715008 135 - 121039945 -GGGACAGGCACAAC-TG--C-CCTGGGTTC----TCTCCCAGGG--GAGAGGCTACTTTCCAGACC--GCCCTTCCACAGATGACCCGAGGTCTCTGCCT-GG-GTGGGGCCGTTGGAGG--CTCTGTTGTGTCAACTGTGATGTGATGTT
i nomLeu3.chr6              C 0 I 9922
s rheMac8.chr7              113310760 135 - 169600520 -TGGACAGGCACGGC-TG--C-CCTGGGCTC----TCTCCC--GG--GGGTGGCTGCTTTCCAGACCTCGCCCTTCCACAGATGACCCGAGGTCTCTGCCT-GG-GTGGGGCCATCGGAGG--CTCTGTCGTGTCAACTGTGATGTGATGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61589939 138 + 171882078 GGGGACAGGCATGGC-TG--C-CCTGGGCTC----TCTCCCAGGG--GAGGGGCTGCTTTCCAGACCTCGCCCTTCCACAGACGACCCAAGGTCTCTGCCT-GC-GTGGGGCCGTCGGAGG--CTCTGTTGTGTCAACTGTGAAGTGATGTT
i macFas5.chr7              I 2 C 0
s macNem1.NW_012011533v1      3908068 135 +   4820037 -TGGACAGGCACGGC-TG--C-CCTGGGCTC----TCTCCC--GG--GGGTGGCTGCTTTCCAGACCTCGCCCTTCCACAGATGACCCGAGGTCTCTGCCT-GG-GTGGGGCCATCGGAGG--CTCTGTCGTGTCAACTGTGATGTGATGTT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9770558 135 +  10730278 -TGGACAGGCACGGC-TG--C-CCTGGGCTC----TCTCCC--GG--GGGTGGCTGCTTTCCAGACCTCGCCCTTCCACAGATGACCCGAGGTCTCTGCCT-GG-GTGGGGCCATCGGAGG--CTCTGTTGTGTCAACTGTGATGTGATGTT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1318031 138 +  24206276 GGGGACAGGCATGGC-TG--C-CCTGGGCTC----TCTCCCAGGG--GAGGGGCTGCTTTCCAGACCTCACCCTTCCACAGACGACCCGAGGTCTCTGCCT-GT-GTGGGGCCATCGGAGG--CTCTGTTGTGTCAACTGTGAAGTGATGTT
i chlSab2.chr29             I 12 C 0
s manLeu1.NW_012102632v1      3898838 134 +   4030761 --GGACAGGCACGGC-TG--C-CCTGGGCTC----TCTCCC--GG--GGGTGGCTGCTTTCCAGACCTCGCCCTTCCACAGATGACCCGAGGTCTCTGCCT-GG-GTGGGGCCATCGGAGG--CTCTGTTGTGTCAACTGTGATGTGATGTT
i manLeu1.NW_012102632v1    I 1 C 0
s colAng1.NW_012114844v1      4017928 135 +   5013933 -GGGACAGGCACAGC-TG--C-CCTGGGCTC----TCTCCC--GG--GGGTGGCTGCTTTCCAGACCTCGCCCTTCCACAGATGACCTGAGGTCTCTGCCT-GG-GCGGGGCCATCGGAGG--CTCTGTTTTGTCAACTGTGATGTGATGTT
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113739091 136 - 132174527 GGGGACAGGCATGGC-TG----CCTGGGCTC----TCTCCCA-GG--GGAGGGCTGCTTTCCAGACCTCCTCCTTCCATAGATGACCCGAGGTCTCTGCCT-GG-GTGGGGCCATCGGAGG--CTCTATTGTGTCAACTGCGATGTGATGTT
i calJac3.chr10             I 2 C 0
s cebCap1.NW_016107334v1        86031 136 +  11725426 GGGGACAGGCACGGC-TG----CCTGGGCTC----TCTCCCA-GG--GGAGGGCTGCTTTCCAGACCTCGTCCTTCCATAGATGACCCGAGGTCTCTGCCT-GG-GTAGGGCCATCGGAGG--CTCTGTTGTGTCAACTGTGATGTGATGTT
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       678922 136 +    730879 GGGGACAGGCACGGC-TG----CCTGGGCTC----TCTCCCA-GG--GGAGGGCTGCTTTCCAGACCTCGTCCTTCCATAGATGACCCAAAGTCTCTGCCT-GG-GTGGGGCCATCGGAGG--CTCTGTTGTGTCAACTGTGATGTGATGTT
i aotNan1.NW_018503093v1    I 2 C 0
s otoGar3.GL873530            5776068 116 -  36342412 ----------ATGGC-----C-CCTAGGCTT----TCTCCCA-GG--GCAGG-----------GAGCTTGTCCTTGCACAGATGGCCCTAGGCCTCTGCCC-CG-TTAGAGCCGTTAGAAGCTCTCTGTCAAATCAGCTGTGATGTGATGTT
i otoGar3.GL873530          I 5 C 0
s mm10.chr9                  90185279  87 + 124595110 ---------GAGGGC-TGGTC-CCTCGGGTC----A-------GG--ATATG---------------------------AGGTGGCTGGGTAGCTTTTCC--------------TCAGAGGTCTCTTGTTGTGGCAGCTGAGGTGTGACAGT
i mm10.chr9                 I 2 C 0
s canFam3.chr3               58207836 109 +  91889043 ----CCCGGCCCAGCATG--T-CCCTGGCCCAGCGTGTCCC----------------------------------CCACAGA-GACCCCAGATCTCAGCCTAGG-GTGGGGCCCACAGAGGCACACTGCTGTATCAGCTGTGAAGTGATGCT
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             841150 134 +   1727078 -GGGGTTGGCAGTGC-TT--CTCCTGGGCTC----CCTTCCA-GGTTGGTGGGCTGCTTTA--------GGCCTTCCACAGGTGATCCTAGGTCTTGACCT-GGAGTGGGGCCATCAGAGACCCTCTGTTTTATCAGCTGTGATGTGATGCT
i dasNov3.JH579681          C 0 C 0
e panPan2.chr15              23049698 3017 -  99763055 I
e saiBol1.JH378378              76160 2208 -    125141 M

a score=22037.000000
s hg38.chr15_KI270850v1_alt     26002 2 +    430880 CT
s panTro5.chr15              23356967 2 -  83230942 TT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01000037v1      2542122 2 +   2806052 CT
i gorGor5.CYUI01000037v1    C 0 N 0
s rheMac8.chr7              113310895 2 - 169600520 CT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61590077 2 + 171882078 CT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3908203 2 +   4820037 CT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9770693 2 +  10730278 CT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1318169 2 +  24206276 CT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3898972 2 +   4030761 CT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4018063 2 +   5013933 CT
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113739227 2 - 132174527 CT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107334v1        86167 2 +  11725426 CT
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       679058 2 +    730879 CT
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5776184 2 -  36342412 CT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90185366 2 + 124595110 TT
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58207945 2 +  91889043 CT
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             841284 2 +   1727078 CT
i dasNov3.JH579681          C 0 C 0
e panPan2.chr15              23049698 3017 -  99763055 I
e nomLeu3.chr6               22715143 9922 - 121039945 I
e saiBol1.JH378378              76160 2208 -    125141 M

a score=59540.000000
s hg38.chr15_KI270850v1_alt     26004 8 +    430880 CCGGATCC
s panTro5.chr15              23356969 8 -  83230942 CCGGATCC
i panTro5.chr15             C 0 C 0
s rheMac8.chr7              113310897 8 - 169600520 CTGGATCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               61590079 8 + 171882078 CTGGATCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3908205 8 +   4820037 CTGGATCC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9770695 8 +  10730278 CTGGATCC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               1318171 8 +  24206276 CTGGATCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3898974 8 +   4030761 CTGGATCC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4018065 8 +   5013933 CTGGATCC
i colAng1.NW_012114844v1    C 0 C 0
s calJac3.chr10             113739229 8 - 132174527 CCAGATCC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107334v1        86169 8 +  11725426 CCAGATCC
i cebCap1.NW_016107334v1    C 0 C 0
s aotNan1.NW_018503093v1       679060 8 +    730879 CCAGATCC
i aotNan1.NW_018503093v1    C 0 C 0
s otoGar3.GL873530            5776186 8 -  36342412 CCAGACCC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  90185368 5 + 124595110 CCAGA---
i mm10.chr9                 C 0 C 0
s canFam3.chr3               58207947 8 +  91889043 CCAGATCT
i canFam3.chr3              C 0 C 0
s dasNov3.JH579681             841286 8 +   1727078 TTAGATCC
i dasNov3.JH579681          C 0 C 0
e panPan2.chr15              23049698 3017 -  99763055 I
e nomLeu3.chr6               22715143 9922 - 121039945 I
e saiBol1.JH378378              76160 2208 -    125141 M

a score=605701.000000
s hg38.chr15_KI270850v1_alt          26012 79 +    430880 -TTGTCGGGCCTGGCTC----CAGGGTCTGGGCT-CAGA-----CACGGAGGCTGCAGGG--TCGGAG-AGCAGGGCCACATGAGGGTTTGGC
s panTro5.chr15                   23356977 79 -  83230942 -TTGTCGGGCCTGGCTC----CAGGGTCTGGGCT-CAGA-----CACGGAGGTTGCAGGG--TCGGAG-AGCAGGGCCACATGACGGCTTGGC
i panTro5.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random         0 79 -     28805 -TTGTCGGGCCTGGCTC----CAGGGTCTGGGCT-CAGA-----CACAGAGGCTGCAGGG--TCAGAG-AGCAGGGCCACATGACGGCTTGGC
i nomLeu3.chr6_GL398151_2_random n 9922 C 0
s rheMac8.chr7                   113310905 79 - 169600520 -TTGTTGGGCCTGGCTC----CAGGGTCTGGGCT-CAGG-----GACGGAGGCTGCAGGG--TCAGAG-GGCAGCGCCACATGAGGGCTTGGC
i rheMac8.chr7                   C 0 I 89572
s macFas5.chr7                    61590087 79 + 171882078 -TTGTCGGGCCTGGCTC----CAGGGTCTGGGCT-CAGG-----GACGAAGGCTGCAGGG--TCAGAG-AGCAGGGCCACATGAGGGCTTGGC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3908213 79 +   4820037 -TTGTTGGGCCTGGCTC----CAGGGTCTGGGCT-CAGG-----GACGGAGGCTGCAGGG--TCAGAG-GGCAGCGCCACATGAGGGCTTGGC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9770703 79 +  10730278 -TTGTTGGGCCTGGCTC----CAGGGTCTGGGCT-CAGG-----GACGGAGGCTGCAGGG--TCAGAG-GGCAGCGCCACATGAGGGCTTGGC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1318179 79 +  24206276 -TTGTCGGGCCTGGCTC----CAGGGTCTGGGCT-CAGG-----GACGGAGGCTGCAGGG--TCAGAG-GGCAGGGCCACATGAGGGCTTGGC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3898982 79 +   4030761 -TTGTTGGGCCTGGCTC----CAGGGTCTGGGCT-CAGG-----GACGGAGGCTGCAGGG--TCAGAG-AGCAGCGCCACATGAGGGCTTGGC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4018073 79 +   5013933 -TTGTTGGGCCTGGCTC----CAGGGTCTGGGCT-CAGG-----GACGGAGGCTGCAGGG--TCAGAG-AGCAGCGCCACATGAGGGCTTGGC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113739237 79 - 132174527 -TTGTCGGGCCTGGCTC----CGGGATCTGGGCT-CAGG-----GATGCAGGCTGCAGGG--TTGGAG-AGCAGGGCCACATGAGGGCTTGGT
i calJac3.chr10                  C 0 C 0
s cebCap1.NW_016107334v1             86177 79 +  11725426 -TTGTCGGGCCTGGCTT----CAGGGTCTGGGCT-CAGG-----GATGCAGGCTGCAGGG--TTAGAG-AGCAGGGCCACGAGAGGGCTTGGT
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            679068 72 +    730879 -TTGTCGGGCCTGGCTC----CAGGGTCTGGGCT-CAAG-----GA-------TGCAGGG--TTGGAG-AGCAGGGCCACATGAGGGCTTGGT
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5776194 79 -  36342412 -TTGTCTGGCCTGGCTC----CAAGGTCAGGCTG-GTGG-----TGCAGGAGCTGCAGGG--ACTCAG-AGCGGGGCCATGTGAGGGCCTGGT
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90185373 64 + 124595110 --------GCCTGGCCC----AAGGGTCCCAGC--------------AGGAGCTGCAGGA--GCTAAG-AGCATAACCACTTGAGGATTGGGT
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58207955 57 +  91889043 ------------------------------GGGG-CGGG-----GGTGGAGGCTGCAGGAACTCAGAGCAGCAGGGCCAGGGGAGGGCTGGGC
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  841294 90 +   1727078 CTACTTGAGATTGCCCCATGGCAGGACCTTGGCTGCAGGTGGGTGGTGGAGGCTGCAGGA--ACTCAG-AGCAGGTCTGCATGAGAGCTGGGC
i dasNov3.JH579681               C 0 C 0
e panPan2.chr15                   23049698 3017 -  99763055 I
e saiBol1.JH378378                   76160 2208 -    125141 M

a score=563877.000000
s hg38.chr15_KI270850v1_alt          26091 104 +    430880 GGTCCAGGAGGCCT--------------------------TCTGAGGGAAGGGCCCTG---------------------------------------------------------GCAGCGTGTGCAGAGGCCTGGGA-TTGGGGTTG------------------------------------GGG--------TTGTTT--AGCC--------AGCT---GGAGTGCCCAGGAGGTGAGATGA
s panTro5.chr15                   23357056 104 -  83230942 GGTCCAGGAGGCCT--------------------------TCTGAGGGAAGGGCCCTG---------------------------------------------------------GCAGCATGTGCAGAGGCCTGGGA-TTGGGGTTG------------------------------------GGA--------TTGTTT--AGCC--------AGCT---GGAGTGCTCAGGAGGTGAGATGA
i panTro5.chr15                  C 0 I 26
s nomLeu3.chr6_GL398151_2_random        79 104 -     28805 GTTCCAGGAGGCCT--------------------------TCTGAGGGAAGGGCCCTG---------------------------------------------------------GCAGCGTGTGCAGAGGCCTGGGA-TTGGGGTTG------------------------------------GGG--------TTGTTT--AGCC--------AGCT---GGAGTGCCTAGGAGGTGAGATGA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59987143 102 + 169600520 GGTTCAGGAGGCCT----------------------------TGAGGGAAGGACCCTG---------------------------------------------------------GCAGTGTGTACAGAGGCCTGGGA-TTGGTGTTG------------------------------------GGG--------TTGTTT--AGCT--------AGCT---GGAGTGCCCAGGAGGTGAGATGA
i rheMac8.chr7                   n 89572 C 0
s macFas5.chr7                    61590166 105 + 171882078 GGTCCAGGAGGCCT--------------------------TCTGAGGAAAGGGCCCTG---------------------------------------------------------GCAGCGTGTGCAGAGGGCTGGGATTTGGGGTTG------------------------------------GGG--------TTGTTT--AGCC--------AGCT---GGAGTGCCCAGGAGGTGAGATGA
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3908292 103 +   4820037 GGTCCAGGAGGCCT--------------------------TCTGAGGGAA-GGCCCTG---------------------------------------------------------GCAGCGTGTGCAGAGGGCTGGGA-TTGGGGTTG------------------------------------GGA--------TTGTTT--AGCC--------AGCT---GGAGTGCCCAGGAGATGAGATGA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9770782 104 +  10730278 GGTCCAGGAGGCCT--------------------------TCTGAGGGAAGGGCCCTG---------------------------------------------------------GCAGCGTGTGCAGAGGGCTAGGA-TTGGGGTTA------------------------------------GGA--------TTGTTT--AGCC--------AGCT---GGAGTGCCCAGGAGATGAGATGA
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1318258 104 +  24206276 GGTCCAGGAGGCCT--------------------------TCTGAGGAAAGGGCCCTG---------------------------------------------------------GCAGCGTGTGCAGAGGGCTGGGA-TTGGGGTTG------------------------------------GGA--------TTGTTT--AGCC--------AGCT---GGAGTGCCCAGGAGGTGAGATGA
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3899061 104 +   4030761 GGTCCAGGAGGCCT--------------------------TCTGAGGGAAGGGCCCTG---------------------------------------------------------GCAGCGTGTGCAGAGGGCTGGGA-TTGGGGTTG------------------------------------GGA--------TTGTTT--AGCC--------AGCT---GGAGTGCCCAGGAGGTGAGATGA
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4018152 104 +   5013933 GGTCCAGGAGGCCT--------------------------TCTGAGGGAAGGGCCCAG---------------------------------------------------------GCAACGTGTGCAGAGGGCTGGGA-TTGGGGTTG------------------------------------GGG--------TTGTTT--AGCC--------AGCT---GGAGCGCCCAGGAGGTGAGATGA
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113739316 154 - 132174527 GATTCAGGAGGTCT--------------------------TCGGAGGGAAGCGCCCTGGGGCTGCATCTGGAGGGAAGGCTGCAGCCATAGG---AAGGCTGCCACGTGGAGGCGGCATCGTGTGCAGAGGCCAGGCA-CTGGGGCTG------------------------------------CGG--------TTGTTG--------------AGCT---GGAGTGCCCAGGAGGTGAGATGA
i calJac3.chr10                  C 0 C 0
s cebCap1.NW_016107334v1             86256 156 +  11725426 GATCCAGGAGG-CT--------------------------TCAGAGGGAAGGACCCTGGTGCTGCATCTGGAGGGGAGGCTGCAGCGGTAGGGCAGGAGGAGCGGGGTGGAGGCAGCAGCGTGTGCAGAGGCCGGGCA-CTGGGGCTG------------------------------------GGG--------TTGTTG--------------AGCT---GGAGTGCCCAGGAGGTGAGATCA
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            679140 156 +    730879 GATCCAGGAGG-GT--------------------------TCGGAGGGAAGGACCGTGGGACTGCATCTGGAGGGGAGGCTGCAGCGGTCGGGCAGGAGGAGCGGGGTAGAGGTGGCAGCGTGTGCAGAGGCCGGGCA-CTGGGGCTG------------------------------------GGG--------TTGTTG--------------AGCT---GGAGTGCCCAGGAGGTGAGATGA
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5776273 142 -  36342412 GGTCTAGGAGGACT--------------------------TCTGAGAGAAGAGCCCTTGGGCTGCATCTCAAGGAGAGAG-----------------------------------GCATCACCAGTGGGGCTAGAGGA-GAAGGGTGG------------------------------------GTGAATAGCCTGTGTTC--AGCCTGGCACTGGGCTTGGGGACAGCACAGAGGGGGCAA---
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90185437 110 + 124595110 GGACC---AGGCCT--------------------------TTGGAAGATAGGTGCCAGAGTCTCTGTGGT---------------------------------------------GGGGCACGTGCCAAGGCCTGCCT-GTGGGGGTG------------------------------------GGG--------TATTTGTCAGCT--------GGCT---GGAGATCT-----GGCCAGATGA
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58208012 164 +  91889043 -GTAGGGGAGGCTTCCCTGGCGGTGCCCTTGGGATGGGTCTCTGGGGCAGAGTTCATG---------------------------------------------------------GTAGTGTGTGCAGAGCACTGCAG-GTGGAGCCAGCAGCTTATGCAAATGTGTGGCCCCAGGAGGGGGGTGAG--------TTGTTT--AGTG--------AGCT---AGAGTGCCT-GGAGGTGAAGGGG
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  841384  99 +   1727078 GGTCCAGGGGGACT--------------------------TCTG-GGGAAGGGCCCTG---------------------------------------------------------G-GGCTGGAGGAGGAGGCGAGCA-TTGTAGGTG------------------------------------AGGGAA-----CTGCTT---GCC--------TGCC---AGGG----CAGTGGGCAAGTTG-
i dasNov3.JH579681               C 0 C 0
e panPan2.chr15                   23049698 3017 -  99763055 I
e saiBol1.JH378378                   76160 2208 -    125141 M

a score=3417796.000000
s hg38.chr15_KI270850v1_alt          26195 462 +    430880 GATTGGCTGGGAGGGCCTGTGCTACTGGCT--GCAGGTGGAGGATCGGCTGA-------GCCGAGCGGGGAGGCTGGAGTT-TCCTACAGTTGTAGGGCTCTGTGCCCCCTCCCACCTCTCCTCCTCTCCTGGCCCCACCGAGGCTTCTCCGATGGGTCTCA---------------------CAGGCTGCGCCC--CCCTCCA---------------------TCCTCCCGTCC--CATCTCT--AGCCATGGGTGGAGCCTGTGCCTGGATGACCCGCCTGCCAAGGACATCATTGACTTCCCATCAGTGCTGCCTGGGGTCCTCTATGATGTGAGCCACCAGTGCCACCTCCAGTATGGGGCCTACTCTGCCTTCTGCGAGGACATGGATGTGAGTGGGGCCGGTGTGGGTGTGGGGGTG-TGGGGACCC----GACAGGAGGGCTTAGGGGACAGCTTTCACCAGCCTGTGGATGCCAGCTTGGGAGCAACCTCGCCTGG-GCT---GGGCTACGCCCCTGAGT--------------
s panTro5.chr15                   59802895 462 +  83230942 CAGAGGCCGGGAGGGCCTGTGCTGCTGGCT--GCGGGTGGAGGATCGGCTGA-------GCCGAGCAGGGAGGCTGGAGTT-TCCTACAGTTGCAGGGCTCTGTGCCCCCTCCCGCCTCTCCTCCTCTCCCGGCCCCACCAAGGCTTCTCCGATGGGTCTCA---------------------CAGGCTGCGCCC--CCCTCCA---------------------TCCTCCCATCC--CATCTCT--AGCCATGGGTGGGGCCTGTGCCTGGATGACCCTCCTGCCAAGGACATCATCGACTTCCCCTCGGTGCCGCCTGGCATCCCCTATGCTGTGAGCCACCAGTGCCACCTCCAGTACGGGGCCTACTCTGCCTTCTGCGAGGACATGGATGTGAGTGGGGCCGGTGTGGGTGTGGGGGTG-TGGGGACCC----GGCAGGAGGGCTAAGGGGACAGCTCTCACCAGCCGGTGGATGCCAGCCTGGGCGCAACCTCTCCTGG-CCT---GGGCTGCGCCCCCGAGT--------------
i panTro5.chr15                  n 26 C 0
s nomLeu3.chr6_GL398151_2_random       183 449 -     28805 GAGAGGCCGGGAGGGCCTGTGCTGCTGGCT--GCAGGTGGAGGATCGGCTGA-------GCCGAGCAGGGAGGCTGGAGTT-TCCTACAGTTGCAGGGCTCTGTGCCCCCTCCCACCTCTCCTCCTCTCCCGGCCCCACCGAGGCTTCTCCGATGGGTCTCA---------------------CAGGCTGCACCC--CCCTCCA---------------------TCCTCCCGTCC--CATCTCT--AGCCGTGGGTGGGGCCTGTGCCTGGACGACCCTCCTGCCAAGGACATCATCGACTTCCCCTTGGTGCTGCCTGGTGTCCTCTATGATATGAGCCACCAGTGCCGCCTCCAGTACGGGGCCTACTCTGCCTTCTGCGAGGACATGGATGTGAGTGGGGCCGGTGTGGGTGTGGGGGTG-TGGGGACCC----GGCAGGAGGGCTCAGGGGACAGCTCTCACCAGCCCGTGGAGG-------------AACCTCGCCTGG-CCT---GGGCTGCGCCCCTGAGT--------------
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59987245 452 + 169600520 GAGAGGCTGGGAGGGTCTCTGCTGCTGGCT--GTGGGTGGAAGATCGGCTGA-------GCAGAGAGGGGAGGCTAGAGTT-TCCTACAGTTGTAGGACTCTGTGTCCCCTCCCA--------CCTCTCCTCGCCCCACCAAGGCTTCTCCAATGGGTCTCC---------------------CAGGCTGCG-CC--CCCTCCA---------------------TCCTCCCATCC--CATCTCT--AGCCATGGGTGGGGCCTGTGCCTGGATGACCCTCCTTCCAAGGACATCATCGACTTCTCCTCAGTGCCACCTGGCATCCTCTATGATGTGAGCCACCAGTGCCGCCTCCAGTATGGGGCCTACTCTGCCTTCTGCGAGGACATGGATGTGAGTGGGGCCAGTGTAGGTGTGGGGGTG-TGGGGACCC----GGCAGGAGGGCTC-GGGGACAGCTCTCACCAGCCCATGGATGCCAGCCTGAGAGTAACCTCACCTGG-CCT---GGGCTGCGCCCCCGAGT--------------
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61590271 458 + 171882078 GAGAGGCCGGGAGGGCCTGTGCTGCTGGCT--GTGGTTGGAGGATCAGCTGA-------ACCAAGCGGGGAGGCTGGAGTT-TCCTACAGTTGTAGGGCTCTGTGCCCTCTCCCA---CTTCTCCTCTCCCAGCCCCACAGAGGCTTCTCCGATGGGTCTCA---------------------CAGGCTGCG-CC--CCCTCCA---------------------TCCTCCCGTCC--CATCTCT--AGCCGTGGGTAGGGCCTGTACCTAGACGACCCTCCTGCCAAGGACATCATCGACTTCCCCTCAGTGCTGCCTGGCGTCCTCTATGATGTGAGCCACCAGTGCCGCCTCCAGTACAGGGCCTACTCTGCCTTCTGCGAGGACATGGATGTGAGTGGGGCTGATGTGGGTGTGGGGGTG-TGGGGACCT----GGCAGGAGGGCTCAGGGGACAGCTCTCACCAGCCCGTGGATGCCAGCCTGGGAGTAACCTCACCTGG-CCT---GGGCTGCACCCCCGAGT--------------
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3908395 461 +   4820037 GAGAGGCCGGGAGGGCCTGTGCTGCTGGCT--GTGGTTGGAGGATCAGCTGA-------ACCGAGCGGGGAGGATGGAGTT-TCCTATAGCTGTAGGGCTCTGTGCCCCCTCCCACCTCTCCTCCTCTCCCGGCCCCACTGAGGCTTCTCTGATGGGTCTCA---------------------CAGGCTGCG-CC--CCCTCCA---------------------TCCTCCCGTCC--CATCTCT--AGCCGTGGGTGGGGCCTGTGCCTGGACGACCCTCCTGCCAAGGACATCATCGACTTCCCCTCGGTGCCACCTGGCGTCCTCTATGATGTGAGCCACCAGTGCCGCCTCCAGTACGGGGCCTACTCTGCCTTCTGCGAGGACATGGATGTGAGTGGGGCCGGTGTGGGTGTGGGGGTA-TGGGGACCC----GGCAGGAGGGCTCAGGCGACAGCTCTCACCAGCCCGTGGATGCCAGCCTGGGAGTAACCTCGCCTGG-CCT---GGGCTGCGCCCCCGAGT--------------
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9770886 461 +  10730278 GAGAGGCCGGGAGGGCCTGTGCTGCTGGCT--GTGGTTGGAGGATCAGCTGA-------ACCGAGCGGGGAGGCTGGAGTT-TCCTATAGCTGTAGGGCTCTGTGTCCCCTCCCACCTCTCCTCCTCTCCCGGCCCCACTGAGGCTTCTCCGATGGGTCTCA---------------------CAGGCTGCG-CC--CCCTCCA---------------------TCCTCCCGTCC--CATCTCT--AGCCGTGGGTGGGGCCTGTGCCTGGACGACCCTCCTGCCAAGGACATCATCGACTTCCCCTCGGTGCCACCTGGCGTCCTCTATGATGTGAGCCACCAGTGCCGCCTCCAGTACGGGGCCTACTCTGCCTTCTGCGAGGACATGGATGTGAGTGGGGCCGGTGTGGGTGTGGGGGTA-TGGGGACCC----GGCAGGAGGGCTCAGGGGACAGCTCTCACCAGCCCGTGGATGCCAGCCTGGGAGTAACCTCGCCTGG-CCT---GGGCTGCGCCCCCGAGT--------------
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1318362 457 +  24206276 GAGAGGCCGGGAGGGCCTGTGCTGCTGGCT--GTGGTTGGAGGATCAGCTGA-------ACCAAGTGGGGAGGCTGGAGTT-TCCTATAGCTGTAGGGCTCTGTGCCCCCTCCCA---CTTCTCCTCTCCCGGCCCCACTGAGGCTTCTCCGATGGGTCTCA---------------------CAGGCTGCG--C--CCCTCCA---------------------TCCTCCCGTCC--CATCTCT--AGCCGTGGGTAGGGCCTGTGCCTAGACGACCCTCCTGCCAAGGACATCATCGACTTCCCCTCAGTGCTGCCTGACGTCCTCTATGATGTGAGCCACCAGTGCCGCCTCCAGTATGGGGCCTACTCTGCCTTCTGCGAGGACATGGATGTGAGTGGGGCCGATGTGGGTGTGGGGGTG-TGGGGACCT----GGCAGGAGGGCTTAGGGGACAGCTCTCACCAGCCCGTGGATGCCAGCCTGGGAGTAACCTCGCCTGG-CCT---GGGCTGCGCCCCCGAGT--------------
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3899165 461 +   4030761 GAGAGGCCGGGAGGGCCTGTGCTGCTGGCT--GTGGTTGGAGGATCAGCTGA-------ACCAAGCGGGGAGGCTGGAGTT-TCCTATAGCTGTAGGGCTCTGTGCCCCCTCCCACCTCTCCTCCTCTCCCGGCCCCACTGAGGCTTCTCCGATGGGTCTCA---------------------CAGGCTGCG-CC--CCCTCCA---------------------TCCTCCCGTCC--CATCTCT--AGCCGTGGGTGGGGCCTGTGCCTGGACGACCCTCCTGCCAAGGACATCATCGACTTCCCCTCGGTGCCACCTGGCGTCCTCTATGATGTGAGCCACCAGTGCCGCCTCCAGTACGGGGCCTACTCTGCCTTCTGCGAGGACATGGATGTGAGTGGGGCCGGTGTGGGTGTGGGGGTA-TGGGGACCC----GGCAGGAGGGCTCAGGGGACAGCTCTCACCAGCCCGTGGATGCCAGCCTGGGAGTAACCTCGCCTGG-CCT---GGGCTGCGCCCTCGAGT--------------
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4018256 460 +   5013933 GAGAGGCCGGGAGGGCCTGTGCTGCTGGCT--GTGGTTGGAGGATCAGCTGA-------ACCCAGCGGGGAGGCTGGAGTT-TCCTACAGCTGTAGGGCTCTGTG-CCCCTCCCACCTCTCCTCCCTTCCCGGCCCCACCGAGGCTTCTCCGATGGGTCTCA---------------------CAGGCTACA-CC--CCCTCCA---------------------TCCTCCCGTCC--CATCTCT--AGCCGTGGGTGGGGCCTGTGCCTGGATGACCCTCCTGCCAAGGACATCATCGACTTCCCCTCGGTGCCGCCTGGCGTCCTCTATGATGTGAGCCACCAGTGCCGCCTCCAGTATGGGGCCTACTCTGCCTTCTGCGAGGACATGGATGTGAGTGGGGCCGGTGTGGGGGTGGGGCTG-TGGGGACCC----AGCAGGAGGGCTCAGGGGACAGCTCTCACCAGCCCGTGGATGCCAGCCTGGGAGTAACCTCACCTGG-CCT---GGGCTGCGCCCCCAAGT--------------
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113739470 439 - 132174527 GCGCGGCCGGGAGGACCTCTGCTGCTGGCT--GC------AGGGT-GGCTGA-------GGCAAGCGGGGG-TCTGGAGTTCTCCTGCAGTGGTGGGGCTCTGTGCCACTCC------CTCCTCCCCTCCCAGCCCAGCTGAGGCCTCTCCGGTGGGTCTCA---------------------CAGGCTGCC-CCGGCTCACCC---------------------CTCTCCTGTCC--CATCTCT--AGCCGAGGGTGGGGCCTGTGTCTGGATGACCCTCCTGCCAAGGACATCATCGACTTCCCCTCGGTGCCACCCGGCGTCCTCTATGATGTGAGTCACCAGTGCCGTCTCCAATACGGGGCCTACTCTGCCTTCTGTGATGACATGGATGTAAGT-GGGCTAGGGTGGGTATGAGGGCA-TGGGGACCC----GGCAGGAGGCCTCGGGGGGCAGTCCTCACCAGCCCATGGATGCCAGCCTGGGAGGAACCTCGCTTGG-CCT---GGGCTGC------------------------
i calJac3.chr10                  C 0 C 0
s cebCap1.NW_016107334v1             86412 441 +  11725426 GCATGGGTGGGAGGGCCTCTGCTGCTGGCT--GC------AGGGT-GGCTGA-------GCCAAGCGGGGG-GCTGGAGTTCTCCTACAGTGGTGGGGCTCTGTGCCACTCC------CTCCTCCCCTCCCAGCTCAGCCGAGGCCTCTCCGATGGGTCTCA---------------------CAGGCTGCC-CCTGCCCGCCC---------------------CCCTCCCATCC--CATCTCT--AGCCGCGGGTGGGGGCTGTGCCTGGATGACCCTCCTGCCAAGGACATCATCGACTTCCCCTCCGTGCCGCCCGGCATCCTCTATGATGTGAGCCACCAGTGCCGCCTCCAGTACGGGGCCTACTCTGCCTTCTGCGACGACATGGATGTGAGT-GGGCTGGGGTGGGT--------G-TGGGGACCC----GGCGGGAGGGCTCAGGGGGCAGCCCTCACCAGCCCATGGATGCCAGCCTGGGAGGAACCTCGCTTGG-CCT---GGGCTGCGCCCCCGAAT--------------
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            679296 433 +    730879 GCA---------------CTGCTGCTGGCT--GC------AGGGT-GGGTGG-------GCCGAGCGAGGG--CTGTTGTTTTCCTACAGTGGTGGGGCTCTGTGCCACTCC------CTCCTCCCCTCCTGGCCCAGCCGAGGCCTCTCCGACGGGTCTCA---------------------CAGGCTGCC-CCCGCTCACCC---------------------CCCGTCCGTCC--CATCCCT--AGCCGCGGGTGGGGCCTGTGCCTGGATGACCCTCCTGCCAAGGACATCATCGACTTCCCCTCGGTGCCACCCGGCGTCCTTTATGATGTGAGCCACCAGTGCCGCCTCCAGTACGGGGCCTACTCTGCCTTCTGCGACGACATGGATGTGAGT-GGGCTGGGGTGGGTACGACGGTG-TGGGGACCC----GGCGGGAGGGCTCAGGGGGCAGCCCTCACCAGCCCGTGGATGCCAGCCCGGGAGGAACCTCGCTTGG-CCT---GGGCTGCGCTCCCAAAT--------------
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5776415 448 -  36342412 GAGTGCCTGGGAGGG--------GAGAGGT--G-GGATGGAGGGTCCGCTGA-------CCCAAG---GGGAGCTAGAGTC-CTCAACAAGTGCAGGGCTCTG---CCATTCTCACCTCACTTGCTCTCCTCGCC--ACCGAGGCCTCTT--GCAGCTTTCA---------------------CAGACTGTC-CC--TTCACCATG-------------------TCCTTCCATCTGACCTCTCT--AGCCGCGGGTGGGGCCTGTGCCTGGACGACCCTCCTGCCAAGGATGTCATTGACTTCCCCGCGGTACCACCTGGTGTCCTCTACGATGTGAGCCACCAGTGTCGCCTTCAATACGGGGCCTACTCTGCCTTCTGTGATGACATGGACGTGAGT-GGGCACATCT-GGCATGGGGGTATTGGGGACCCAAAGGACAGGA-GCCTCAGATCACAGCCCTCACTGGCCTGCAGATGCCAGCCTGGGAAGAGCCCTGCCTGG-CCT---GGGCTCAGTCCCCATGT--------------
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90185547 434 + 124595110 GAGAGGTCTTCAGGGCCACCTTGGAAGGCT--GGGGTCACATGACCTGCTGG---------CTAGGTGGAAGACTGTCATT-TTCT-----CACCAGGTTCACAAGTCCTTCCTAGCTCTTCT--------------ACCCAGGCTTCTCCCATGGGTCT-----------------------CAGGCTGCA-CT--CGTGCCCTAGGGACCTCAAGTTATTCTCTCTTCCTTTTT--TTTTTCC--AGCCGTGGGTGGGGCCTGTGCTTAGATGACCGTCCATCCAAGGATGTCATTGCACTCCCCTCGGTGTTGCCCGGTGTCCTGTATGATGTGAACCACCAGTGCCGCCTTCAGTATGGGTCTCACTCTGCCTACTGTGAGGACATGGATGTGAGT-----------------GAGGGCA-TGAGA--------GGCA-------TAGGCGGGTGGCCCTCACCAATCTGACAATGCCAGGCTCAGAGAAACTCTGCCTGG-CTTGGGGGGTGGTGCCTTCAAGG--------------
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58208176 348 +  91889043 ---AGAGTGAGAGGGCCCCAGATGCTAGGTTGGGGGTTGGAGGGTGAACTGG-------GATAAGCAAGAAGGCTGCCTTT-TGCT-----TGCAAGGTTTAGTGTTTTATGCCCCCTTTTCT----------------------------------------------------------------------CC------------------------------TCCTCCCTTCC-----CTGC--AGCCGGGGTTGGGGCCTGTGCTTAGATGACACTCCCACCAAGGATGTCATTGACTTCCCCTCTGTGCCCCCCGGGGTCCTCTACGATGTGGGCCACCAGTGCCGCCTCCAATACGGGGCCTACTCTGCCTTCTGTGAAGACATGGACGTGAGTG----TGGGATGGGCATGGGG----TGGGGGCTG---------------------------CCTCCCCAGCCTACAGCAGCCG------------------CTGG-CCT---GAGCTTGGCCATACAG---------------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  841483 424 +   1727078 --------------------TTAGCTGGAC--TGGCGTGCAGGGTGGGCTCAGGGCCTTGCCGGGGCGGGGGACTGGAGTC-ATCGCAAGC--TTGGGCCTTGTGCCCATTCCCACCTCACCTGCCCTCCAGGCCC-ACCACGGC-TCCCTGCTGGGTCTCAGACAGCTCCCTCACCCCGGGGCAGCTGGCC-CT--CATCCCA---------------------GCCTCCTGCCC--CCTCTCTGCAGCCGCGGGTGGGGCCTGTGCCTGGACGATCTTCCCTCCAAGGAAGTCATCGACTTCCCCATAGTGTTGCCCGGCATCCTCTACGACGTGAACCACCAGTGCCGCCTCCAGTACGGGGCCTCCTCCGTCTTCTGTGACGACATAGACGTGAGT---------------GCGAGCACG-AGTGGACCC-----------------------------------------------CTGCCTGGGAGGGCCTCCTCCTGGCCCT---GGGCTTGGCATCTGAGGCCCAGCTCTCATGT
i dasNov3.JH579681               C 0 C 0
e panPan2.chr15                   23049698 3017 -  99763055 I
e saiBol1.JH378378                   76160 2208 -    125141 M

a score=1148583.000000
s hg38.chr15_KI270850v1_alt          26657 135 +    430880 GACACTGTGAGACGTCAagtggcctgtgggagaggccagggat--gggcggccacagacccagctctgaattctgggtcaa------------ccatggaccgactgtgacccctcgggcaagtcccttcgcctctctggagctGGCTC
s panTro5.chr15                   59803357 135 +  83230942 GACACTGTGAGACATCAagtggcctgtgggagaggccagggat--aggtggccacagacccagctctgaattctgggtcaa------------ccatggactgactgtgacccttcgggcaagtcccttcccctctctggagctGGCTC
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23052715 135 -  99763055 GACACTGTGAGACGTCAagtggcctgtgggagaggccagggat--gggcggccacagacccagctctgaattctgggtcaa------------ccatggaccaactgtgacccttcgggcaagtcccttcccctctctggagctGGCTT
i panPan2.chr15                  I 3017 C 0
s nomLeu3.chr6_GL398151_2_random       632 135 -     28805 GACACTGTGAGACGTCAagtggcctgtgggagaggccaggaat--gggcagctacagacccagctctgaattctgggtcaa------------ccatggaccaactgtgacccttcagacaagtcccttcacctctctggagctGGCTT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59987697 135 + 169600520 GATACTGTGAGACGCCAAGTGACCTGTGGgagaggccagggat--gggcggccacagacccagctctgaattctgggtcaa------------ccatggacaaagtgtgacactttgggcaagtcccttagcctctctggagctGGCTC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61590729 135 + 171882078 GATACTGTGAGACATCAGGTGGCCTgtgggagaggacagggat--gggcggccacatacccagctctgaattctgggtcaa------------ccatggaccaactgtgacacttccggcaagtcccttagcctctctgGAGCTGGCTC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3908856 135 +   4820037 GATACTGTGAGACGTCAagtggcctgtgggagaggccagggat--gggcggccacagacccagctctgatttctgggtcaa------------ccatggaccaactgtgacacttcgggcaagtcccttagcctctctggagctGGCTC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9771347 135 +  10730278 GATACTGTGAGACGTCAagtggcctgtgggagaggccagcgat--gggcggccacagacccagctctgatttctgggtcaa------------ccatggaccaactgtgacacttcgggcaagtcccttagcctctctggagctGGCTC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1318819 135 +  24206276 GATACTGTGAGACATCAGGTGGCCTgtgggagaggacagggat--gggcagccacatacccagctctgaattctgggtcaa------------ccatggaccaactgtgacacttccggcaagtcccttagcctctctgGAGCTGGCTC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3899626 135 +   4030761 GATACTGTGAGACGTCAagtggcctgtgggagaggccagggat--gggcggccacagacccagctctgatttctgggtcaa------------ccatggaccaactgtgacacttcgggcaagtcccttagcctctctggagctGGCTC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4018716 135 +   5013933 GATACTGTGAGACATCAagtggcctgtggaagaggccagggat--gggcggccacagacccagctctgatttctgggtcaa------------ccatggaccaactgtgacacttcgggcaagtcccttagcctctctggagctGGCTC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113739909 124 - 132174527 -ACACTGTGACACGTCT-GAGGCCTgtgggagaggccagggat--gggaagccacagacctggctctgaattctgggtcaa------------ccatggatccactgtga---------caagtcccttagcctccttggggctGGCTT
i calJac3.chr10                  C 0 C 0
s cebCap1.NW_016107334v1             86853 126 +  11725426 GACACTGTGAC-CGTCA-GAGGCCTGTGGGAGAGGCCAAGACCCGGGACAGCCAcagacccggctctgaattctgagtcaa------------cctcggatccactgtga---------caagtcccttagcctccctggggctGGCTT
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            679729 125 +    730879 GACACTGTGACGCGTCA-GAAGCCTgtgggagaggccagggat--gggcggccacagacccagctctgaattctgggtcaa------------ccacggatccactgtga---------caagtctcttagcctccctggggctGGCTT
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5776863 135 -  36342412 GACAACTCAAGACAcaaagtggcctgcaggagaggcccaggat--gggtggcaacagacccaggtctgaattctgggtcag------------tcctttgccaactatgagacctgggggaagtcccttaaccctgctggCACTGGCCT
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90185981 127 + 124595110 GGCATGGTAATACCTAATGTGACTTGTGGCCGAGGCCTggcttt-ggatgggcacaggctcaggtctggattctatgtcaa------------cccttaggtgactttga--------acaagtccctcag-ctctctggacttGGCAT
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58208524 142 +  91889043 GATACTGGGAGACACC--GTGGC-TGTGGGATCAGCTGTGGCT--GGGTGGCCACAGACCCAGGTCTGAATTCTGGGTGGAGCCCCTCACCTCCCAAGGCCAGGTTATGAGAC--AAAACAAAACCTACGCTGCATATAGACTTGGGGG
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  841907 113 +   1727078 GGTGGGATGAGACACAGAGTGGCCCGGGG----------------GGGTGGCCACagacccaggtctgagttctgggctga------------ctgtttaccaactaggg-actttgggcgggtgccttaacctccccgagT-------
i dasNov3.JH579681               C 0 C 0
e saiBol1.JH378378                   76160 2208 -    125141 M

a score=53866.000000
s hg38.chr15_KI270850v1_alt          26792 6 +    430880 ATAAGA
s panTro5.chr15                   59803492 6 +  83230942 ATAAGA
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23052850 6 -  99763055 ATAAGA
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random       767 6 -     28805 ATAAGA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59987832 6 + 169600520 ATGAGA
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61590864 6 + 171882078 ATAAGA
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3908991 6 +   4820037 ATGAGA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9771482 6 +  10730278 ATGAGA
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1318954 6 +  24206276 ATAAGA
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3899761 6 +   4030761 ATGAGA
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4018851 6 +   5013933 ATAAGA
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113740033 6 - 132174527 TTAAGA
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   78416 6 -    125141 acaaaa
i saiBol1.JH378378               M 2208 C 0
s cebCap1.NW_016107334v1             86979 6 +  11725426 TTAAGA
i cebCap1.NW_016107334v1         C 0 I 301
s aotNan1.NW_018503093v1            679854 6 +    730879 TTAAGA
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5776998 5 -  36342412 -GCAGA
i otoGar3.GL873530               C 0 I 1
s mm10.chr9                       90186108 6 + 124595110 AGAAGA
i mm10.chr9                      C 0 I 1
s canFam3.chr3                    58208666 3 +  91889043 ---AGA
i canFam3.chr3                   C 0 I 7
s dasNov3.JH579681                  842020 6 +   1727078 GTGAGA
i dasNov3.JH579681               C 0 C 0

a score=913953.000000
s hg38.chr15_KI270850v1_alt          26798 114 +    430880 GGGAAAAGGAAC-----CCCTG---TGGGGAGGGTCTATTTATCCTGGCGAAGATCG----CCTGAAG--------TGAT----------------------CTTCTAACAGGAGTGTTTCCAGAGGAGGCGCT--GGGCC-------------------------------------------------------------------------------GGGAGAGGTGTGGACAG---------
s panTro5.chr15                   59803498 114 +  83230942 GGGAAAAGGAAC-----CCTTG---TGGGGAGGGTCTATTTATCCTGGCGAAGATCG----CCTGAAG--------TGAT----------------------CTTCTAACAGGAGCGTTTCCAGAGGAGGGGCT--GGGCC-------------------------------------------------------------------------------GGGAGAGGTGTGGACAG---------
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23052856 114 -  99763055 GGGAAAAGGAAC-----CCCTG---TGGAGAGGGTCTGTTTATCCTGGCGAAGATCG----CCTGAAG--------TGAT----------------------CTTCTAACAGGAGTGTTTCCAGAGGAGGGGCT--GGGCC-------------------------------------------------------------------------------GGGAGAGGTGTGGACAG---------
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random       773 114 -     28805 GGGAAAAGGAAG-----CCCTG---TGGGGAGGGTCTGTTTATCCTGGCGGAGATCG----CCTGAAG--------TGAT----------------------CTTCTAACGGGAGTGATTCCGGAGAAGGGGCT--GGGTC-------------------------------------------------------------------------------GGGAGAGGTGTGGACAG---------
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59987838 114 + 169600520 GGGAAAAGGAAC-----CCCAG---TGGGGAGGGTCTATTTATCCTGGAGAAGATTG----CCTGAAG--------TGAT----------------------CTTCTAACGGGAGTGTTTCCAGAGGAGGGGCT--AGGCT-------------------------------------------------------------------------------GGGAGAGGTGGGGACAG---------
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61590870 114 + 171882078 GGGAAAAGGAAC-----CCCAG---TGGGGAGGGTCTATTTATCCTGGAGAAGATTG----CCTGAAG--------TGAT----------------------CTTCTAACGGGAGTGTTTCCAGAGGAGGGGCT--GGGCC-------------------------------------------------------------------------------CGGAGAGGTGGGGACAG---------
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3908997 114 +   4820037 GGGAAAAGGGAC-----CCCAG---TGGGGAGGGTCTATTTATCCTGGAGAAGATCA----CCTGAAG--------TGAT----------------------CTTCTAACGGGAGTGTTTCCAGAGGAGGGGCT--GGGCC-------------------------------------------------------------------------------CGGAGAGGTGGGGACAG---------
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9771488 114 +  10730278 GGGAAAAGGGAC-----CCCAG---TGGGGAGGGTCTATTTATCCTGGAGAAGATCA----CCTGAAG--------TGAT----------------------CTTCTAACGGGAGTGTTTCCAGAGGAGGGGCT--GGGCC-------------------------------------------------------------------------------GGGAGAGGTGGGGACAG---------
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1318960 114 +  24206276 GGGAAAAGGAAC-----CCCAG---TGGGGAGGGTCTATTTATCCTGGAGAAGATTG----CCTGAAG--------TGAT----------------------CTTCTAACGGGAGTGTTTCCAGAGGAGGGGCT--GGGCC-------------------------------------------------------------------------------CGGAGAGGTGGGGACAG---------
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3899767 114 +   4030761 GGGAAAAGGGAC-----CCCAG---TGGGGAGGGTCTATTTATCCTGGAGAAGATCA----CCTGAAG--------TGAT----------------------CTTCTAATGGGAGTGTTTCCAGAGGAGGGGCT--GGGCC-------------------------------------------------------------------------------GGGAGAGGTGGGGACAG---------
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4018857 114 +   5013933 GGGAAAAGGGAC-----CCCAG---TGGGGAGGGTCTATTTATCTGGGAGAAGATTG----CCTGAAG--------TGAT----------------------CTTCTAATGGGAGTGTTTCCAGAGGAGGGGCT--GGGCC-------------------------------------------------------------------------------GGGAGAGGTGGGGACAG---------
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113740039 114 - 132174527 GGGAAAAGGAAC-----CCATG---TGGGGAGGGTCTGTTTATCCTGGAGAAGACTG----CCTGGAG--------TGAT----------------------CTTCTAATGGGAGTGTTTTCAGAGGTGGGGCT--GGGCC-------------------------------------------------------------------------------AGGAGAGGGCTGGACAG---------
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   78422 103 -    125141 GGGGAAAGGAAC-----CCATG---TGGGGAGGGTCTGTTTATTCTGGAGAAGACTG----CCTGGAG--------TGAT----------------------CTTCTAACTG-----------GAGGTGGGGCT--GGGCC-------------------------------------------------------------------------------GGGAGAGGGGTGGAGAG---------
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             87286 113 +  11725426 gggaaaaggaaC-----CTGTG---TGGGGAGGGTCTGTTTATCCTGGAGAAGACTG----CCTGGAG--------TGAT----------------------TTTCTAACGGGAGTGTTTCCAGAGGCGGGGCT--GGGCG-------------------------------------------------------------------------------GGGAGAGGG-TGGACAG---------
i cebCap1.NW_016107334v1         I 301 C 0
s aotNan1.NW_018503093v1            679860 114 +    730879 GGGAAAAGGAAC-----CCGTG---TGGGGAGGGTCTGTTTATCCTGGAGAAGACTG----CCTGCTG--------TGAT----------------------CTTCTAACTGGAGTGTTTCCAGAGGCCGGGCT--GGGCC-------------------------------------------------------------------------------GGGAGTGGGGTAGACAG---------
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5777004 177 -  36342412 ---GGAAGGACA-----GGCTG---TGCTGTGGGTC--------CTG----AGACCT----CCTGAAG--------GAGT----------------------CTTCTAATGAG-GTCTCTCTAGATGAGTGGGT--GGGGCTACTCTGAGCTTCAAACCTGCTCTTCAGGCCCAGCCCAGGGACCCCACAACCCACTTGGTCTTGAAGGGAAGTGGGTGGGAGGGGGGAGTAGACAG---------
i otoGar3.GL873530               I 1 I 204
s mm10.chr9                       90186115 115 + 124595110 GGGAAAAAAAAAATCAGCCCTT---CAGGG------------TCCCAGAGAGGTTCT----TGTAAAAATATGACCTGAC----------------------CTTCTATCTTGAATGTTTCAGGAGGTATAGCCTGGGGCT-------------------------------------------------------------------------------GGAAGAGGT--GGCCAG---------
i mm10.chr9                      I 1 C 0
s canFam3.chr3                    58208676 116 +  91889043 CTCAGAGGGGAC-----CCTAGACATGGGGAAACTGTA---GACCTAGGGAAGATCGTAGACCTGGGG--------GGGA----------------------CCATAGACATGTGTGATTATAGACCTGAGG----GGGAC-------------------------------------------------------------------------------CATAGACCTGGGGAAAT---------
i canFam3.chr3                   I 7 I 8
s dasNov3.JH579681                  842026 132 +   1727078 GGGAAGATGAAA-----CCTCT---GGGAG------------TCTGGGGGGAGGTCA----CCTGCA---------TGATGACCATTACAGGGACCCTGCAGCTTCTTATGGG-GTCCTTCTAGACAGTGGGCTC-TGGCT-------------------------------------------------------------------------------CAAAGAGGTCGTGGCCTCCACTGGAG
i dasNov3.JH579681               C 0 C 0

a score=759900.000000
s hg38.chr15_KI270850v1_alt          26912 103 +    430880 -------CTGAGG--------ACCACTCTGAGC---------------AGTGCAGCC-C----CGGGCGCCCCAC------------ACCACCACGTGGT----------------------CTGGGGAGGAAGG--------TGGGAG-CAG----------ACACAC---AAGAA----GGGACCTCTGGGGGTCT
s panTro5.chr15                   59803612 103 +  83230942 -------CTGGGG--------ACCGCTCTGAGC---------------AGCGCAGCC-C----CGGGCGCCCCAC------------ACCACCACATGGT----------------------CTGGGGAGGAAGG--------TGGGAG-CAG----------GCACAC---AAGAA----GGAAGCTCTGGGGGTCT
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23052970 103 -  99763055 -------CTGGGG--------ACCGCTCTGAGC---------------AGTGCAGCC-C----CGGGCGCCCCAC------------ACCACCACATGGT----------------------CCGGGGAGGAAGG--------TGGGAG-CAG----------ACACAC---AAGAA----GGAAGCTCTGGGGGTCT
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random       887 103 -     28805 -------CTGGGG--------ACCGCTCTGAGC---------------AGCGCAGCC-C----TGGGCGCCTCAC------------ACCGCCACATAGT----------------------CAGGGGAGGAAGG--------TGGGAG-CAG----------ACACAC---AAGAA----GGGACCTCTGGGGGTCT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59987952 103 + 169600520 -------CTGGGG--------ACCGCTCTGAGG---------------AGTGCAGCC-C----CGAGCACCCCAC------------ACCACCACATGGT----------------------CCAGGGAGGAAGG--------TGGGAG-CAG----------ACACAC---AAGAA----GGGACCTCTGGGGGTCT
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61590984 103 + 171882078 -------CTGGGG--------ACGGCTCTGAGG---------------AGCACAGCC-C----TGGGCGCCCCAC------------ACCACCACATGGT----------------------CCGGGGAGGAAGG--------TGGGAG-CAG----------GCACAC---AAGAA----GGGACCTCTGGGGGTCT
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3909111 103 +   4820037 -------CTGGGG--------ACGGCTCTGAGG---------------AGCACAGCC-C----TGGGCGCCCCAC------------ACCACCACATGGT----------------------CCGGGGAGGAAGG--------TGGGAG-CAG----------GCACAC---AAGAA----GGGACCTCTGGGGGTCT
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9771602 103 +  10730278 -------CTGGGG--------ACGGCTCTGAGG---------------AGCACAGCC-C----TGGGCGCCCCAC------------ACCACCACATGGT----------------------CCGGGGAGGAAGG--------TGGGAG-CAG----------GCACAC---AAGAA----GGGACCTCTGGGGGTCT
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1319074 103 +  24206276 -------CTGGGG--------ACGGCTCTGAGG---------------AGCACAGCC-C----TGGGCGCCCCAC------------ACCACCACATGGT----------------------CTGGGGAGGAAGG--------TGGGAG-CAG----------GCACAC---AAGAA----GGGACCTCTGGGGGTCT
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3899881 103 +   4030761 -------CTGGGG--------ACGGCTCTGAGG---------------AGCACAGCC-C----TGGGCGCCCCAC------------ACCACCACATGGT----------------------CCGGGGAGGAAGG--------TGGGAG-CAG----------GCACAC---AAGAA----GGGACCTCTGGGGGTCT
i manLeu1.NW_012102632v1         C 0 M 4725
s colAng1.NW_012114844v1           4018971 103 +   5013933 -------CTGGGA--------ACCGCTCTGAGC---------------AGCGCGGCC-C----TGGGCACCCCAC------------ACCACCACATGGT----------------------CCGAGGAGGAAGG--------TGAGAG-CAG----------GCACAC---AAGAA----GGGACCTCTGGGGGTCT
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113740153  88 - 132174527 -------CTGGGG--------AGTG---------------------------CAGCC-C----CGGGCCCCCTAA------------ACCACCACAGGGT----------------------CTGGAGAGGAAGG--------TGGGAG-CAG----------ACAC------AGAA----GGGACCTCTAGGGGTCT
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   78525 100 -    125141 -------CTGCGG--------AGTGCTGTGAGC---------------AGCACAGCC-C----CGGGCCCCCCAC------------ACCACCACGGGGT----------------------CTGGCGAGGAAGG--------TGGGAG-CAG----------ACAC------AGAA----GGGACCTCTGGGGGTCT
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             87399 100 +  11725426 -------CTGGGG--------AGCGGTGTGAGC---------------AGCGCAGCC-C----CGGGCCCCCCAC------------ACCACCACAAGGT----------------------CTGGCGAGGAAGG--------TGGGAG-CAG----------ACAC------AGAA----GGGACCTCTGGGGGTCT
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            679974 100 +    730879 -------CTGGGG--------AGTGCTGTGAGC---------------AGCGCAGCC-C----TGGGCCCCCCAC------------ACCGCCACAGGGT----------------------CTGGAGAGGAAGG--------TGGGAG-CAG----------ACAC------AGAA----GGGACCTCTGGGGGTCT
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5777385 108 -  36342412 -------tttgag--------gttgttgtgagc---------------tgtgacgccac----ggggcactctactgagggcaatatagtgagactttgt----------------------ctgaaaaaaaaaa--------aGGGAG-TA---------------------AGTG----GGGGCCTTTGGGGGTGC
i otoGar3.GL873530               I 204 I 8
s mm10.chr9                       90186230 124 + 124595110 -------CTGGAG--------ACAGCTGTCTGCACCAACCCAGCCTGGAGGGCAGCC-CCTTTCAAAGGCCCCAT------------GATATCATGTGAC----------------------TGAGGGAGAGGGG--------CCAAAG-GAGTCTCGAGTTTGCACACTCACAGGA----TGGGCT-----------
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58208800 114 +  91889043 ----------GTG--------AAGGCCAT-------------------CGTCCTGTT-A----CGGACTCCCCAA------------GCC----CGAGGTGGGTAGGTATCTTTTTAGGCAACTGGGCAGGGCTG-----ATTTGAGAG-TAG----------GTGAGC---CTGGA----GACAGGTCAGAGCA---
i canFam3.chr3                   I 8 C 0
s dasNov3.JH579681                  842158 119 +   1727078 ATGGGGCCTGAGGCAGCAAACCCGGCTTTGGG----------------GTCCCAGCC-C----AGGGCTCCTCAT-----------------------GT----------------------CCAGAGAGGAAGGGGCAGGTGTGGGAGACAG----------GAGCGG---AAAAAATGCGGGGCCTCTGGGAGTCC
i dasNov3.JH579681               C 0 C 0

a score=2215011.000000
s hg38.chr15_KI270850v1_alt          27015 220 +    430880 -------GTGGGCCCCTGCCATGTGGAGGGGTGCCCAGGG-ACCC-----TTGGGGACAG--GGAGG---GGGGCAGGGTGGGTG----------------------------------GCGGCAC--TGGGG-----------AG--GGGG--TGAGGCTATGGCCCATGCCCTCCTCCTCGCAGAATGTCTGCCACACACTCTGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGGATGCAGCCGTGGACGGCATCCGGTGTGGGGAGAATAAGGTAGGCGATG
s panTro5.chr15                   59803715 205 +  83230942 -------GTGGGCCCCTGCCATGTGGAGGGGTGCCCAGGGGACCC-----TTGGGGACAG--GGAGG---GGGGCAGGGTGGGTG----------------------------------GCGGCAC--TGGGT-----------AG--GGTG--TGAGGGTATGGCCCATGCCCTCCTTCTCACGGAATGTCTGCCACACACTCTGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGGATGCAGCCATGGACGGCACCCGGTCGGGGG----------------TG
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23053073 221 -  99763055 -------GTGGGCCCCTGCCATGTGGAGGGGTGCCGAGGGGACCC-----TTGGGGACAG--GGAGG---GGGACAGGGTGGGTG----------------------------------GCGGCAC--TGGGG-----------AG--GGTG--TGAGGGTATGGCCCATGCCCTCCTCCTCGCAGAATGTCTGCCACACACTCTGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGGATGCAGCCGTGGACGGCACCCGGTGTGGGGAGAATAAGGTAGGGGGTG
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random       990 222 -     28805 -------GTGGGCCCCTGCCATGTGGAGGGGTGCCCAGGGGACCCT----TTGGGGACAG--GGAGG---GGGGCAGGGTGGGTG----------------------------------GCAGCAC--GGGGC-----------AG--GGTG--TGAGGGTATGGCCCATGCCCTCCTCCTTGCAGAATGTCTGCCACACACTCTGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGGATGCAGCCGTGGACGGCACCCGGTGTGGGGAGAACAAGGTAGGGGATG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59988055 219 + 169600520 -------GTGGGCCCCTGCCATGTAGAGGGGTGCCCAGGGGACCC-----TTGGGGACAG--GGAGG---GGG-CAGGGTGGGTG----------------------------------GCAGCAC--TGGG------------AG--AGGG--TGAGGGTATGGCCCATGCCCTCCTCCTCACAGAATGTCTGCCACACACTCTGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGGATGCAGCCGTGGACAGCACCCAGTGTGGGGAGAATAAGGTACAGGATG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61591087 218 + 171882078 -------GTGGGCCCCTGCCATGTGGAGGGGTGCCCAGGGGACCC-----TTGGGGACAG--GGAGG---GGG-CAGGGTGGGTG----------------------------------GTGGCAC--TGGG-------------G--GGGG--TGAGGGTATGGCCCATGCCCTCCTCCTCGCAGAATGTCTGCCACACAATCTGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGAATGCAGCCGTGGACAGCACCCGGTGTGGGGAGAATAAGGTAGGGGATG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3909214 212 +   4820037 -------GTAGGCCCCTGCCATGTGGAGGGGTGCCCAGGGGACCC-----TTGGGGACAG--GGAGG---GGG-CAGGGTGGGTG----------------------------------GCGGCAC--TGGG------------AG--GGGG--TGAGGGTATGG-------CCTCCTCCTTGCAGAATGTCTGCCACACACTCTGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGGATGCAGCCGTGGACGGCACCCGGTGTGGGGAGAATAAGGTAGGGGATG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9771705 219 +  10730278 -------GTAGGCCCCTGCCTTGTGGAGGGGTGCCCAGGGGACCC-----TTGGGGACAG--GGAGG---GGG-CAGGGTGGGTG----------------------------------GCGGCAC--TGGG------------AG--GGGG--TGAGGGTATGGCCCATGCCCTCCTCCTTGCAGAATGTCTGCCACACACTCTGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGGATGCAGCCGTGGACGGCACCCGGTGTGGGGAGAATAAGGTAGGGGATG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1319177 218 +  24206276 -------GTGGGCCCCTGCCATGTGGAGGGTTGCCCAGGGGACCC-----TTGGGGACAg--ggagg---ggg-cagggtgggtg----------------------------------gtggaac--tggg-------------a--gggg--tgagggTATGGCCCATGCCCTCCTCCTCGCAGAATGTCTGCCACACAATCTGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGAATGCAGCTGTGGACGGCACCCGGTGTGGGGAGAATAAGGTAGAGGATG
i chlSab2.chr29                  C 0 C 0
s colAng1.NW_012114844v1           4019074 219 +   5013933 -------GTGGGCCCCTGCCATGTGGAGGGGTGCCTAGGGGACCC-----TTGGGGACAG--GGAGG---GTG-CAGGGTGGGTG----------------------------------GCGGCAC--TGGG------------AG--GGGG--TAAGGGTATGGCCCATGCCCTCCTCCTTGCAGAATGTCTGCCACACACTCTGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGGATGCAGCTGTGGACGGCACCCGGTGTGGGGAGAATAAGGTAAAGGATG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113740241 222 - 132174527 -------GTGGACCCCTGCCATGTGGAAGGGTGTCCAGGGGGCCC-----TTGGGGACAG--GGTGG---GGG-CAGGGCAGGTG----------------------------------GTGGCAT-AGGGGT-----------GGGTGGGG--TAAGGGTGTGGCCTGTGTCC-CCTCCTTGCAGAATGTCTGCCACACACTTTGGTGCTCTGTCGGGACCACCTGTCACTCCAAGCTGGATGCAGCCGTGGATGGCACCCGGTGTGGGGAGAACAAGGTAGGAGGTG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   78625 221 -    125141 -------GTGGACCCCCGCTATGTGGAAGGGTGTCCAGGGGGCCC-----TTGGGGACAG--GGTGG---GGG-CAGGGCGGCTG----------------------------------GTGGCAC--GGGGT-----------GGGTGGGG--TGAGGGTGTGGCCTCTGCCC-CCTCCTTGCAGAATGTCTGCCACACACTTTGGTGCTCCGTCGGGACCACCTGTCACTCCAAGCTGGATGCAGCCGTGGACGGCACCCGGTGTGGGGAGAACAAGGTAGGAGGTG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             87499 234 +  11725426 -------GTAGACCCCCACCATGTGGAAGGGTGTCCAGGGGGCCC-----TTGGTGACAg--ggtgg---ggg-cagggcgggtg----------------------------------gtggcacggggggtggtggcacggggggtgggg--tgagggtgtggCCTGTGCCC-CCTCCTCGCAGAATGTCTGCCACACACTTTGGTGCTCTGTCGGGACCACCTGTCACTCCAAGCTGGATGCAGCCGTGGACGGCACCCGGTGTGGGGAGAACAAGGTAGGAGATG
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            680074 220 +    730879 -------GTGGACCCCCGCCATGTGGAAGGGTGTCCAGGGGGCCC-----TTGGGGACAg--ggtgg---ggg-cagggtgggtg----------------------------------gtggcat--gggg------------gggcgggg--tgagggtgTGGCCTGCGCCC-CCTCCTTGCAGAATGTCTGCCACACACTTTGGTGCTCTGTTGGGACCACCTGTCACTCCAAGCTGGATGCAGCCGTGGACGGCACCCGGTGTGGGGAGAACAAGGTAGGAGGTG
i aotNan1.NW_018503093v1         C 0 I 26
s otoGar3.GL873530                 5777501 222 -  36342412 -------ACAGACCCCTGCCATGTGGGGGGGTGCTCAGAGGACTCTC---TTGGGGACAG--GGTGG---GGA-CATGGCAGGTG----------------------------------ATGGCAC--TGGGG-----------TG--GGGG--TGAGCGTGTGGTCCATGCCCTGCTCCTCACAGAATGTCTGCCACACACTCTGGTGCTCAGTGGGGACCACCTGTCACTCCAAGCTGGATGCAGCCGTGGATGGCACCAGGTGCGGGGAGAGCAAGGTAGGGAATG
i otoGar3.GL873530               I 8 C 0
s mm10.chr9                       90186354 208 + 124595110 -----------GTCCC-----TGTGGAAATGTGTCCGGGGTGTTC-----TTGGGGG-AC--CGTAG---GGA-CAGAGCGGGTG----------------------------------CTGTCCC--TGGGG-----------AA--CGTGTCTGAGGGTAATGTATGTG----CCTCTTTGCAGGATGTCTGCCACACACTATGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGGATGCGGCTGTGGATGGCACGAGCTGTGGGAAGAATAAGGTGCGTGGGA
i mm10.chr9                      C 0 I 1
s canFam3.chr3                    58208914 253 +  91889043 -------GCAAGCCCCAG------GGCTGGGCACCCCCAGCACCACACAGTTGGGAAAAGATGGGAG---GGG-CCTTCTGGGAGTCCCATCTGCAACCCCCACTCCCATCCCCTCCCCGAAGCAC--CAGG------------GA--GGGG--TGAGAGTATGGCCCATGTCTTCCGCCTTGCAGAACGTGTGCCACACTCTCTGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGGATGCAGCCGTGGATGGAACCAGGTGTGGGGAGAGCAAGGTAGGGG-TG
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  842277 222 +   1727078 TCGCATTGTG----CCAGCCCCATGGAGGGGTACCTAGGGGACTC-----TCGGGGACAG--TGAGGGGTGGG-GCAGGCGAGCG----------------------------------GGAACAC--TGGGG-----------AG--AGGG--TGAGGGC---GCCCATGCCCTCCTCCTCGCAGAATGTCTGCCACACGCTCTGGTGCTCTGTGGGGACCACCTGTCACTCCAAGCTGGATACTGCCGTGGACGGCACCAGGTGTGGGGAGAACAAGGTAGG-GATG
i dasNov3.JH579681               C 0 C 0
e manLeu1.NW_012102632v1           3899984 4725 +   4030761 M

a score=157045.000000
s hg38.chr15_KI270850v1_alt          27235 31 +    430880 TTCCCAGTCCCGGCAGTG-----------GATGTGT---------GAGAGG
s panTro5.chr15                   59803920 31 +  83230942 CCCCCAGTCCCGGCGGTG-----------GGTGTGT---------GAGAGG
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23053294 31 -  99763055 CCCCCAGTCCCGGCAGTG-----------GGTGTGT---------GAGAGG
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      1212 31 -     28805 TCCCCAGTCCCGGCGGTG-----------GGTGTGT---------GAGATG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59988274 31 + 169600520 TCCCCAGTCCCGGCGGTG-----------GGTGTGT---------GAGATG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61591305 31 + 171882078 TCCCCAGTCCCGGCGGTG-----------GGTGTGT---------GAGACG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3909426 31 +   4820037 TCCCCAGTCCCGGCGGTG-----------GGTGTTG---------GAGAGG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9771924 31 +  10730278 TCCCCAGTCCCGGTGGTG-----------GGTGTTG---------GAGAGG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1319395 31 +  24206276 TCCCCAGTCCCGGCGGTG-----------GGTGTGT---------GAGACG
i chlSab2.chr29                  C 0 C 0
s colAng1.NW_012114844v1           4019293 31 +   5013933 TCCCCAGTCCCGGCGGTG-----------GGTGTTG---------GAGAGG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113740463 27 - 132174527 --CCTAGTCCCAGCGGCG-----------GGAGGGA---------GAGG--
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   78846 27 -    125141 --CCCAGTCCCAGCAGTG-----------GGAGGGA---------GAGG--
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             87733 27 +  11725426 --CCCAGTCCCAGCAGTG-----------GGAGGGA---------GAGG--
i cebCap1.NW_016107334v1         C 0 C 0
s otoGar3.GL873530                 5777723 37 -  36342412 TCCCTAACCCCAGCTGTG-----------GGGATGTCTGTACCTCGGG---
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90186563 34 + 124595110 ACCTCAAGCCTGTCGGAG-----TAT---GGGGTCT---------GGGAGG
i mm10.chr9                      I 1 C 0
s canFam3.chr3                    58209167 36 +  91889043 -CCGCAGCCTCTGCTGTG-----GAGGCAGGTGGGT---------GGGGAG
i canFam3.chr3                   C 0 I 3
s dasNov3.JH579681                  842499 38 +   1727078 -CCTGCGGCGCAGCTGCGCTGGGGAG---GGGGTGT---------GAGAGC
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            680294 26 +    730879 I
e manLeu1.NW_012102632v1           3899984 4725 +   4030761 M

a score=135629.000000
s hg38.chr15_KI270850v1_alt          27266 25 +    430880 CCAGACCT---CCTGCTGTGACCGGGCC
s panTro5.chr15                   59803951 25 +  83230942 CTAGACCT---CCTGCTGTGGCCGGGCC
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23053325 25 -  99763055 CCAGACTT---CCTGCTGTGACCAGGCC
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      1243 25 -     28805 CCAGACCT---CCTACTGTGACCGGGCC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59988305 22 + 169600520 CCAGA------CCTGCTGTAACCAGGCC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61591336 22 + 171882078 CCAGA------CCTGCTGTAACCAGGCC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3909457 22 +   4820037 CCAGA------CCTGCTGTGACCGGGCC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9771955 22 +  10730278 CCAGA------CCTGCTGTGACCAGGCC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1319426 22 +  24206276 CCAGA------CCTGTTGTAACCAGGCC
i chlSab2.chr29                  C 0 C 0
s colAng1.NW_012114844v1           4019324 22 +   5013933 ACAGA------CCTGCTGTGACCGGGCC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113740490 25 - 132174527 CCAGACCT---CCTGCTGTGTCCAGGCC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   78873 25 -    125141 CCAGACCT---CCTGCTGTGTCCGGTTC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             87760 25 +  11725426 CCAGACCT---CCTGCTGTGTCCGGGCC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            680320 25 +    730879 CCAGACCT---CCTGCTGTGTCTGGGCC
i aotNan1.NW_018503093v1         I 26 C 0
s otoGar3.GL873530                 5777760 16 -  36342412 -TCAACCT---TATCCTGTG--------
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90186597 22 + 124595110 ------CTGTCTTTCCTCTGCCCGTGCC
i mm10.chr9                      C 0 I 103
s canFam3.chr3                    58209206 24 +  91889043 -TTGAGCT---CCCGTTGTGCCCATGCT
i canFam3.chr3                   I 3 C 0
s dasNov3.JH579681                  842537 24 +   1727078 GCAGGTTT---CCTGAC-TGTTAGTGCT
i dasNov3.JH579681               C 0 C 0
e manLeu1.NW_012102632v1           3899984 4725 +   4030761 M

a score=1054829.000000
s hg38.chr15_KI270850v1_alt          27291 115 +    430880 CTGGAGTCAGCCCCGGCTCACAG-------------------AGAGCCCCA--------TGCCCTCTGCAGCCCAAGCCCCCGTCTGCAAAGTGGAGGCATTGGGGCCAGGGCTTGATTCCATGATTCTCCAGGGTGTCTTC
s panTro5.chr15                   59803976 134 +  83230942 CTGGGGTCAGCCTCGGCTCACAGTCTTGCCTGTGCTTGTAGCAGAGCCCCA--------AGCTCTCTGCAGCCCAAGCCCCCGTCTGCAAAGTGGAGGCATTGGGGCCAGGGTTTGATTCCATGATTCCCCAGGGTGTCTTC
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23053350 134 -  99763055 CTGGGGTCAGCCCCGGCTCACAGTCTTGCTTGTGCTCCTAGCAGAGCCCCA--------CGCTCTCTGCAGCCCAAGCCCCCATCTGCAAAGTGGAGGCATTGGGGCCAGGGCTTGATTCCATGATTCCCCAGGGTGTCTTC
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      1268 134 -     28805 CTGGGGTCAGCCCCGGCTCACAGTCTTGCTTGTGCTTGTAGTAGAGCCCCG--------CACTCTCTGCAGCCCAAGCCCCCGCCTGCAAAGTGGAGGCACTGGGGCCAGGACTTGATTCCGTGATTCCCCAGGGTGTCTTC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59988327 134 + 169600520 CTGAGGTCAGCCCCAGCTCACAGTCTTGCTTGTGCTCCTAGCAGAGCCCCG--------CACTCTCTGCAGCCCAAGGCCCCATCTGCAAAGCGGAGGCATTGGGGCCAGGGCTTGATTCCATGATTCCCCCGGAGGTCTTC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61591358 134 + 171882078 CTGGGGTCAGCCCCGGCTCACAGTCTTGCTTGTGCTTCTAGCAGAGCCCCG--------CACTCTCTGCCTCCCAAGGCCCCATCTGCAAAGCAGAGGCACTGGGGCCAGGGCTTGATTCCATGATTCCCCAGGGTGTCTTC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3909479 134 +   4820037 CTGGGGTCAGCCCCGGCTCACAGTCTTGCTTGTGCTCCTAGCAGAGCCCCA--------CACTCTCTGCCCCCCAAGGCCCCATCTGCAAAGCAGAGGCACTGGGGCCAGGGCTTGATTCCATGATTCCCCAGGGTGTCTTC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9771977 134 +  10730278 CTGGGGTCAGCCCCGGCTCACAGTCTTGCTTGTGCTCCTAGCAGAGCCCCG--------CACTCTCTGCCCCCCAAGGCCCCATCTGCAAAGCGGAGGCACTGGGGCCAGGGCTTGATTCCATGATTCCCCCGGGTGTCTTC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1319448 134 +  24206276 CTGGGGTCAGCCCCGGCTCACAGTCTTGCTTGTGCTTCTAGCAGAGCCCCG--------CACTCTCTGCCTCCCAAGGCCCCATCTGCAAAGCAGAGGCACTGGGGTCAGGGCTTGATTCCATGATTCCCCAGGGTGTCTTC
i chlSab2.chr29                  C 0 C 0
s colAng1.NW_012114844v1           4019346 134 +   5013933 CTGGGGTCAGCCCCGGCTCACAGTCTTGCTTGTGCTCCTAGCAGAGCCCCG--------CACTCTTTGCAGCCCAAGGCACCATCTGCAAAGTGGAGGCATTGGGGCCAGGGCTTGATTCCATGATTCCCCAGGGTGTCTTC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113740515 130 - 132174527 CGGGGGTCAGCCCCAGCTCACAGTCTTGC-TGTGCTCCTAGCAGACCCCC----------ACTCTCTGCAGCCCAAACCTCCATCTACAAAGTGGAAGCATTGGGGATAGGGCTTGATTCCATGATTCCCT-GGGTGTCTTC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   78898 130 -    125141 CGGGGGTCAGCCCCAGCTCACAGTCTTGC-TGTGCTCCTAGCAGACCCCC----------ACTCTCTGCAGCCCAAGCCCCCGTCTACAAAATGGAGGCATTGGGGACAGGGCTTGATTCCATGATTCCCC-GGGTGTCTTC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             87785 130 +  11725426 CGGGGGTCAGCCCCAGCTCACAGTCTTGC-TGTGCTCCTAGCAGACCCCC----------ACTCTCTGCAGCCCAAGCCTCCGTCTACAAAGTGGAGGCACTGGGCACAGGGCTTGATTCCATGATTCCCC-GGGTGTCTTC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            680345 130 +    730879 CGGGAGTCAGCCCCAGCTCACAGTCTTGC-TGTGCTCCTAGCAGACCCCC----------ACTCTCTGCAGCCCAAGCCCCTGTCTACAAAGTGGAGGCATTGGGGGCAGGGCTTGATTCCATGATTCCCC-GGGTGTCTTC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5777776 109 -  36342412 ----------------------GCCTTGCTTGTGCTGTCAGCAGACCCCA----------GCTCTATGTGGCCCAAGTCCCCATCTGCAAACTGGAGGCA-TGCAGGCAGGGCTTGATTCCATGACTCTCTGAGAAGTCTTC
i otoGar3.GL873530               C 0 C 0
s canFam3.chr3                    58209230 121 +  91889043 CTGGAGGCCGCCTGGGTTCA--GACCAGCTTAAGCTCCTAGCAGAGCCCCAGCCTCCCCTACTCTCTCTAGCCCTC-CCCGTGTCTGCAGAGAGGAGGTGGTGCAGC--------GGCCCCA-------CCAGAAAGTC---
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  842561 124 +   1727078 CTGGGGTCAACCTGGGCTCACAGACTTGCCTGTGCTCCTAGTGGGCCTCTG---------ACCCTCTCTGACCCAAGACTC-ACCTGTAAAGTTGAGGCACTGGGGGCGAGACTTGATTCTGTGATTCTCCAAG--------
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90186619 103 + 124595110 I
e manLeu1.NW_012102632v1           3899984 4725 +   4030761 M

a score=1538838.000000
s hg38.chr15_KI270850v1_alt          27406 178 +    430880 AGCT--GAGTCAGCACGTGGGC--T-GT-TTTACTCCCT------GCTCAGCGCCTCCATGTGGCCTGGGTCACA---------GATGATTGTGATGATTGCGAGGGGGCCTCTCT--CACCTTCCATCCTTCCCCTCTGTGCCTTTTGCAGCATTCTCACACACCTTGTTCTCACTAGGG----TGAGGAT-----GACT-GATAGGCTT
s panTro5.chr15                   59804110 178 +  83230942 AGCT--GAGTCAGCACGTGGGC--T-GT-TTTACTCCCC------GCTCAGCGCCTCCATGTGGCCTGGGTCACA---------GATGATCGTGATGATTGTGAGGGGGCCTCTCT--CACCTTCCATCCTTCCCCTCTGTGCCTTTCGCAGCCTTCCCACCCACCTTGTTCTCACTAGGG----TGAGGAT-----GACT-GATAGGCTT
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23053484 178 -  99763055 AACT--GAGTCAGCACGTGGGC--T-GT-TTTACTCCCC------GCTCAGCTCCTCCATGTGGCCTGGGTCACA---------GATTATTGTGATGATTGTGAGGGTGCCTCTCT--CACCTTCCATCCTTCCCCTCTGTGCCTTTCGCAGCCTTCCCACCCACCTTGTTCTCACTAGGG----TGAGGAT-----GACT-GATAGGCTT
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      1402 179 -     28805 AGCT--GAGTCAGCACGTGGGC--T-GT-TTTACTCCCC------GCTCAGCTCCTCCCTGTGGCCTGGGTCACA---------GATGATTGTGATGATTGCGAGGGGGCCTCTCT--CACCTTCCATCCTTCCCCTCTGTGCCTTTCGCAGCCTTCCCACCCACCTTGTTCTCACTAGGG----TGAGGAT-----GACTGGATAGGCTT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59988461 178 + 169600520 AGCT--GAGTCAGCATGTGGGC--C-GT-TTTACTCCCT------GCTCAGCTCCTCCCTGTGGTCTGGGTCACA---------GATGATTGTGATGATTGTAAAGGGGCCTCTCT--CACCTTCCATCCTTCCCCTCTGTGCCTTTCTCAGCCTTCCCACCCACCTTGTTCTCACTAGGG----TGAGGAT-----TACT-GATAGGCTG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61591492 178 + 171882078 AGCT--GAGTCAGCACGTGGGC--T-CT-TTTACTCCCT------GCTCAGCTCCTCCCTGTGGCCTGGGTCACA---------GATGATTGTGATGATTGTGAGGGGGTCTCTCT--CACCTTCCATCCTTCCCCTCTGTGCCTTTCTCAGCCTTCCCACCCACCTTGTTCTCACTAGGG----TGAGGAT-----GACT-GATAAGCTG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3909613 178 +   4820037 AGCT--GAGTCAGCACGTGGGC--T-GT-TTTACTCCCT------GCTCAGCTCCTCCCTGTGGCCTGGGTCACA---------GATGATTGTGATGATTGTGAGGGGGTCTCTCT--CACCTTCCATCCTTCCCCTCTGTGCCTTTCGCAGCCTTTCCACCCACCTTGTTCTCACTAGGG----TGAGGAT-----GACT-GATAGGCTG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9772111 178 +  10730278 AGCT--GAGTCAGCACGTGGGC--T-GT-TTTACTCCCT------GCTCAGCTCCTCCCTGTGGCCTGAGTCACA---------GATGATTGTGATGATTGTGAGGGGGTCTCTCT--CACCTTCCATCCTTCCCCTCTGTGCCTTTCACAGCCTTCCCACCCACCTTGTTCTCACTAGGG----TGAGGAT-----GACT-GATAGGCTG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1319582 178 +  24206276 AGCT--GAGTCAGCACATGGGC--T-GT-TTTACTCCCT------GCTCAGCTCCTCCCTGTGGCCTGGGTCACA---------GATGATTGTGATGATTGTGAGGGGGTCTCTCT--CACCTTCCATCCTTCCCCTCTGTGCCTTTCGCAGCCTTCCCACCCACCTTGTTCTCACTAGGG----TGAGGAT-----GACT-GATAGGCTG
i chlSab2.chr29                  C 0 C 0
s colAng1.NW_012114844v1           4019480 187 +   5013933 AGCT--GAGTCAGCACGTGGGC--T-GT-TTTACTCCCT------GCTCAGCTCCTCCCTGTGGCCTGGGTCACAGATGATTTTGATGATTGTGATGATTGTGAGGGGGTCTCCCT--CACCTTCCATCCTTCCCCTCTGTGCCTTTTGTAGCCTTCCCACCCACCTTGTTCTCACTAGGG----TGAGGAT-----GACT-GATAGGCTG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113740645 177 - 132174527 AGCT--GAGTCGGCACGTGGGC--T-GT-TTTACTCCCT------GCTCAGCTCCGCCCTGCGGCCTGGGCCACA---------TGTTATGGTGATGATTGTGAGGG-GCCTCTCT--TACCTTCCATCCTTCCCCTCTGTGCCTTTCGCGGCCTTCCCACCCACCTTGTTCTCACTAGGG----TGAGGGT-----GACT-GATAGGGCT
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   79028 177 -    125141 AGCT--GAGTCGGCACGTGGGC--T-GT-TTTACTCCCT------GCTCAGCTCCGCCCTTCGGCCTGGGCCACA---------CGTGATGGTGATGATTGGGAGGG-GCCTGTCT--CACCTTCCATCCTTCCCCTCTGTGCGTTTCGTGGCCTTCCTACCCGCCTTGTTCTCACTAGGG----TAAGGTT-----GACT-GATAGGGCT
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             87915 176 +  11725426 AGCT--GAGTCAGCACGTAGGC--T-GT-TTTACTCCTT------GCTCAGCTCTGCCCTGTGGCCTGGGCCACA---------TGTGATGGTGATGATTGGGAGGG-GCCTCTCT--CACCTTCCATCCTTCCCCTCTGTGCCTTTCGTGA-CTTCCCACCCACCTTGTTCTCACTAGAG----TGAGGAT-----GACT-GATAGGCTT
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            680475 177 +    730879 AGCT--GAGTCGGCACGTGGGC--T-GT-TTTATGCCCT------GCTCAGCTCCGCCCTGCGGCCTGGGCCACA---------CCTGATGGTGATGATTGGGAGGG-GCCTCTCT--CACCTTCCATCCTTCCTCTCTGTGCCTTTCATGGCCTTCCCACCCACCTTGTTCTCACTAGGG----TGAGGAT-----GACT-GATAGACTT
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5777885 180 -  36342412 AGCTCAGAGTCATGATGTGGGCCTT-AT-CTTATTCCTT------GCTCAGCTCCACCAGGTGGCCTAGGACACA---------TGT----------ATTGTGAGGGGGCCTCTCTCACACCTTGGATCCTT---CTCTGCGCCTTTTGGGGCCTTCCTGCACACTTCATTCTCACTAGGGTCACTGGTGGTCCAGGGACT-GACAGACCT
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90186722 169 + 124595110 GGCC--CAGTCAACATGGGTTT--T-AT-TTTATTCTTTATGGTCACCCAGCTTCACCATGGCGTCTGTGTTGTG---------GGTGACCATAAA------------GTCTCTCTTACACCTTCCATCCTCCTC-----TGTCTTTTGACACTGTCTTACCTACTTTGATCTCAATGGGG----TGAGGAT-----GATT-GACAGGTGT
i mm10.chr9                      I 103 C 0
s canFam3.chr3                    58209351 105 +  91889043 ----------------ACGGGC--TCCC-TTTATTCCCT------GCTCTGCTCCACCGTGGGGCCTGAGTCTTG------------------GACGACTGAGAGGGGGCCTC-CT--GACT------------------------------------------CCTCAGTCCCACTGGGG----CAAGGAT-----GACT-G--------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  842685 156 +   1727078 -------AGTCAGCTGGTGGCT--T-CTATCTTCTTCCT------GCTCAGC-CCACCGTGCAGCCTTGGTGTTA------------------GATGACCGCAAGGG----ACCCA--CCCCTTTGCTCCTTCCCCTCTGTGCCTTTTCAAGCCT----GTCCCCGTCGTTCCCACCAGGG----TAAGGCT-----GCCC-GATAGGCCT
i dasNov3.JH579681               C 0 C 0
e manLeu1.NW_012102632v1           3899984 4725 +   4030761 M

a score=1839181.000000
s hg38.chr15_KI270850v1_alt          27584 133 +    430880 GGG--GGTGGGGTGGCTCTACCTCCGTCTGTCTCGGTAGTGGTGTCTCAATGGGGAGTGCATACCTGTGGGCTTCCAGCCCGAGGCCATGGATGGTGGCTGGTCTGGCTGGAGCGCCTGGTCCATCTGCTCACGG
s panTro5.chr15                   59804288 133 +  83230942 GGG--GGTGGGGTGGCTCTACCTCCGTCTGTCTCGGTAGTGGTGTCTCAATGGGGAGTGCGTACCCGTGGGCTTCCGGCCCGAGGCCGTGGATGGTGGCTGGTCCAGCTGGAGCGCCTGGTCCATCTGCTCACGG
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23053662 133 -  99763055 GGG--GGTGGGGTGGCTCTACCTCCGTCTGTCTCAGTAGTGGTGTCTCAATGGGGAGTGCGTACCTGTGGGCTTCCGGCCCGAGGCTGTGGATGGTGGCTGGTCTGGCTGGAGCGCCTGGTCCATCTGCTCACGG
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      1581 135 -     28805 GGGGTGGGGGGTTGGCTCTACCTCCATCTGTCTCGGTAGTGGTGTCTCAATGGGGAGTGTGTACCTGTGGGCTTCCGGCCCGAGGCCGTGGATGGTGGCTGGTCTGGCTGGAGCGCCTGGTCCGTCTGCTCGCGG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59988639 133 + 169600520 GGG--GGTGGGGTGGCTCTACCTCCATCTGTCTCGGTAGTGGTGTCTCAATGAGGAGTGCATATCTGTGGGCTTCTGGTCCAAGGCCATGGATGGTGGCTGGTCCGGCTGGAGCGCCTGGTCCATCTGCTCCCGG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61591670 133 + 171882078 GGG--GCTGGGGTGGCTCTACCTCCATCTGTCACAGTAGTGGTGTCTCAATGGGGAGTGCGTACCTGTGGGCTTCCGGCCCGAGGCGGTGGATGGTGGCTGGTCCGGCTGGAGCGCCTGGTCCATCTGCTCCCGG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3909791 133 +   4820037 GGG--GGTGGGGTGGCTCTACCTCCATCTGTCACAGTAGTGGTGTCTCAATGGGGAGTGCGTACCCGTGGGCTTCCGGCCCGAGGCTGTGGATGGTGGCTGGTCCGGCTGGAGCGCCTGGTCCATCTGCTCGCGG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9772289 133 +  10730278 GTG--GGTGGGGTGGCTCTACCTCCATCTGTCACAGTAGTGGTGTCTCAATGGGGAGTGCGTACCCGTGGGCTTCCGGCCCGAGGCTGTGGATGGTGGCTGGTCCGGCTGGAGCGCCTGGTCCATCTGCTCGCGG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1319760 133 +  24206276 GGG--GGTGGGGTGGCTCTACCTCCATCTGTCACAGTAGTGGTGTCTCAATGGGGAGTGCGTACCCGTGGGCTTCCGGCCCGAGGCGGTGGATGGTGGCTGGTCCGGCTGGAGCGCCTGGTCCATCTGCTCCCGG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3904711 133 +   4030761 GGG--GGTGGGGTGGCTCTACCTCCATCTGTCACAGTAGTGGTGTCTCAATGGGGAGTGCGTACCCGTGGGCTTCCGGCCCGAGGCTGTGGATGGTGGCTGGTCCGGCTGGAGCGCCTGGTCCATCTGCTCGCGG
i manLeu1.NW_012102632v1         M 4725 C 0
s colAng1.NW_012114844v1           4019667 133 +   5013933 GGG--GGTGGGGTGGCTCTACCTCCATCTGTCACAGTAGTGGTGTCTCAATGGGGAGTGCGTACCCGTGGGCTTCCGGCCCGAGGCCGTGGATGGTGGCTGGTCTGGCTGGAGCGCCTGGTCCATCTGCTCGCGG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113740822 133 - 132174527 GGG--GGTGGGGTGGCTTTACCTCCATCTGTCTTGGTAGTGGTGTCTCAATGGGGAGTGCGTGCCCGTGGGCTTCCAGCCCGAGGCTGTGGATGGTGGCTGGTCTGGCTGGAGCGCCTGGTCCATCTGCTCGCGG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   79205 133 -    125141 GGG--GGTGGGGTGGCTCTACCTCCATCTGTCTTGGTAGTGGTGTCTCAATGGGGAGTGCGTACCCGTGGGCTTCCGGCCCGAGGCCGTGGACGGTGGCTGGTCCGGCTGGAGCGCCTGGTCCATCTGCTCGCGG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             88091 133 +  11725426 GGG--GGTGGGGTGGCTCTACCTCCATCTGTCTCGGTAGTGGTGTCTCAATGGGGAATGCGTACCCGTGGGCTTCCGGCCCGAGGCCGTGGACGGTGGCTGGTCCGGCTGGAGCGCCTGGTCCATCTGCTCGCGG
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            680652 133 +    730879 GGG--GGTGGGGTGGCTTTACCTCCATCTGTCTTGGTAGTGGTGTCTCAATGGGGAGTGTGTACCCGTGGGCTTCCGGCCCGAGGCCGTGGACGGTGGCTGGTCCGGCTGGAGCGCCTGGTCCATCTGCTCGCGG
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5778065 133 -  36342412 GGG--AGTGAGGCTGCTCTACCTCCGTCTGTCTCGGTAGTGGTGTCTCAATGGGGAATGTGTACCTGTGGGCTCCCGGCCCGAGGCTGTGGACGGTGGCTGGTCTGGCTGGAGTGCCTGGTCCGTCTGCTCGCGG
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90186891 126 + 124595110 ---------CGGGGGTCTGCCCCCCATATGTCTCAGTAGTGGTGTCTCAAAGGAGAGTGCGTCCCTGAGGGCTTCCAGCCCGAGGCGGTGGACGGTGGCTGGTCCGGTTGGAGTGCCTGGTCTGACTGCTCGAGG
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58209456 127 +  91889043 -----GGTGGTATTTCCCTACCCCCATCTGTCT---TAGTGGTGTCTGAATGGGGAGTGCGTTCCTGTGGGCTTCCGGCCTGAGGCTGTGGATGGTGGCTGGTCTGGCTGGAGCCCCTGGTCCATCTGCTCGCGG
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  842841 129 +   1727078 --G--GGTGGGGCTG-TTTACCCCC-TCTGTCTCGGTAGTGGTGTCTCAATGGGGAGTGCGTCCCTGTGGGCTTCCGGCCCAAGGCCGTGGACGGCAGCTGGTCCGGCTGGAGCGCCTGGTCCGTCTGCTCGCGG
i dasNov3.JH579681               C 0 C 0

a score=5097720.000000
s hg38.chr15_KI270850v1_alt          27717 411 +    430880 AGCTGTGGCGTGGGCATACAGAGAGCCAAGCAGCAGTGCATGCAGCCTATGTGAGTGTGGGGCCCAGGGTGCCC-TGGGCA---ATGGGACAGAGGGACCCAG-GC--AGTCAGCCGATT-GCA-G-GAGCTTGGCTCTGTGCCAGCCCCTGGCTCTTAGAAGTGTCCTCATAATGGTCAGTCT--GAG--TGTCCA-G-GCCACCTTGAGTCACTTTCAAGGAGTGTTCTGAGGGCTGACAGGGTCCCCACTGCTGAcccctttgcagaaa--------------------gggggacactgaggcccagagactggagagactcagcagaggccacgtggcaaa-gcagctgctggctggaaggaggcaggagagggcagtggggaagagcatgggccctggaccttagatggctcagggttcgaatcccctctt------------------------cac------------ccctt--------ctc---------
s panTro5.chr15                   59804421 410 +  83230942 AGCTGTGGCATTGGCGTATAGAGCGCCAAGCGGCAGTGCATGCGGCCTACGTGAGTGTGGGGCCCAGGGTGCCC-TGGACA---ATGGGACAGAGGGACCCAA-AC--AGTCAGCCGATT-GCA-G-GAGCTTGGCTCTGTCCCAGCCCCTGGCTCTTAGAAGTGTCCTGATAATGGTCAGTCC--GAG--TGTCCA-G-GCCACCTTGAGTCACTTTCAAGGAGTGTTCTGGGGGCTGACAGGGTCCCCACTGCTGACCCCtttgcagaga---------------------ggggacactgaggcccagagactggagagactcatcagaggccacatggcaaa-gcagttgctggctggaaggaggcaggagagggcagtggggaagagcatgggccctggaccttagatggctcagggttcgaatcccctctt------------------------cac------------ccctt--------ctc---------
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23053795 412 -  99763055 AGCTGTGGCGTGGGCGTACAGAGTGCCGAGCGGCAGTGCACGCAGCCTACGTGAGTGTGGGGCCCAGGGTGCCCTTGGGCA---ATGGGACAGAGGGACCCAA-AC--AGTCAGCCGATT-GCA-G-GAGCTTGGCTCTGTCCCAGCCCCTGGCTCTTAGAAGTGTCCTGATAATGGTCAGTCC--GAG--TGTCCA-G-GCCACCTTAAGTCACTTTCAAGGAGTGTTCTGggggctgacagggtccccacttctgacccctttccagaga--------------------gggggacactgaggcccagagactagagagactcatcagaggccacatggcaaa-gcagctgctggctggaaggaggcaggagagggcagtggggaagagcatgggccctggaccttagatggctcagggttcgaatctcctctt------------------------cac------------ccctt--------ctc---------
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            321290 410 -    378907 agctgtggcGT-GGCATACAGAGAGCCAAGCAGCAGTGCATGCAGCCTATGTGAGTGTGGGGCCCAGGGTGCCC-TGGGCA---ATGGGACAGAGGGACCCAA-AC--AGTCAGCCGATT-GCA-G-GAGCTTGGCTCTGTCCCAGCCCCTGGCTCTTAGAAGTGTCCTCATAATGGTCAGTCT--GAG--TGTCCA-G-GCCACCTTGAGTCACTTTCAAGGAGTGTTCTGAGGGCTGACAGGGTCCCCACTGCTGACCCCTTTGCAGAGA--------------------GGGGGATACTGAGGCCCAGAGACTGGAGAGACTCAGCAGAGGCCACGTGGCAAA-GCAGCTGCTGGCTGGAAGgaggcaggagagggcagtggggaagagcatgggccccggaccttagatggctcagggttcgaatcccctctt------------------------cac------------ccctt--------ctc---------
i gorGor5.CYUI01015946v1         N 0 C 0
s nomLeu3.chr6_GL398151_2_random      1716 431 -     28805 AGCTGTGGCGTGGGCGTACAGAGTGCTGAGCGGCAGTGCATGTGGCCTACGTGAGTGTGGGGCCCAGGGTGCCA-TGGGTA---ATGGGACAGAGGGACCCAA-GC--AGTCAGCCGATT-GCA-G-GAGCTTGGCTCTATCCCAGCCCCTGGCTCTTAGAAGTGTCCTGATAATGGTCAGTCC--GAG--TGTCCA-G-GCCACCCTGAGTCACTTTCAAGGAGTGTTCTGGGGGCTGACAGGGTCTCCACTGCTGACCCCTTTGCAGAAACTGCTGACCCCTTTGCAGAGAGGGGACACTGAGGTCCAGAGACTGGAGAGACGCATCAGAGGCCACATGGCAAA-GCAGCTGCTGGCTGGAAGGAGGcaggagagggcagtggtgaagagcatgggccctggaccttagatggctcagggttcgaatcccctctt------------------------cac------------ccctt--------ctc---------
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59988772 411 + 169600520 AGCTGTGGCGTGGGCGTACAGAGCGCCGAGCGGCAGTGCACGCAGCCTACGTGAGTGTGGGGCCCAGGGTGCCC-TGGGCA---ATGGGACAGAGGGACCCAA-GC--AGTCAGCCGATT-GCA-G-GAGCTTGGCTCTGTCCCAGCCCCTGGCTCTGAGAAATGTCCTCATAATGGTCAGTCC--GAG--TGTCCA-G-GCCACCTTGAGTCACTTTCAAGCAGTGTTCTGGGGGCTGACAGGGTCCCCACTGCTGAcccctttccagaga--------------------gcgggacactgaggtccagagactggagagactcatcagaggccacatggcaaa-gcagctgctggctggaaGGAGGCAGGAGAGGGCAGTGGGGAAGAGCATGGGTCCCAGACCTTAGATGGTTCCAGGTTCGAATCCCATCTT------------------------CAT------------CCTTT--------CTC---------
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61591803 405 + 171882078 AGCTGTGGCCTGGGCATACAGAGCGCCGAGCAGCAGTGCACGCAGCCTACGTGAGTGTGGGGCCCAGGGTGCCC-TGGGCA---ATGGGACAGAGGGACCCAA-GC--AGTCAGCCGATT-GCA-G-GAGCTTGGCTCTGTCCCAGCCTCTGGCTCTTAGAAGTGTCCTCATAATGGTCAGTCC--GAG--TGTCCA-G-GCCACCTTGAGTCACTTTCAAGCAGTGTTCTGGGGGCTGACAGGGTCCCCACTGCTGAcccctttccagaga--------------------gggggacactgaggtccagagactggagagactcatcagaggccacatggcaaa-gcagctgctggctggaaGGAGGCAGGAGAGGGCAGTGGGGAAGA------GCCCTGCACCTTAGATGGCTCTGAGTTCGAATCCCCTctt------------------------cac------------ccctt--------ctc---------
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3909924 411 +   4820037 AGCTGTGGTGTGGGTGTACAGAGCGCCGAGCGGCAGTGCACGCAGCCTACGTGAGTGTGGGGCCCAGGGTGCCC-TGGGTA---ATGGGACAGAGGGACCCAA-GC--AGTCAGCCGATT-GCA-G-GAGCTTGGCTCTGTCCCAGCCCCTGGCTCTTAGAAGCGTCCTCATAATGGTCAGTCC--GAG--TGTCCA-G-GGCACCCTGAGTCACTTTCAAGCAGTGTTCTGggggctgacagggtccccactgctgacccctttccagaga--------------------gcgggacactgaggcccagagactggagagactcatcagaggccacatggcaaa-gcagctgctggttggaaggaggcaggagagggcagtggcgaagagcatgggccctggaccttagatggctctgagttcgaatcctctgtt------------------------cac------------ccctt--------ctc---------
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9772422 411 +  10730278 AGCTGTGGTGTGGGCGTACAGAGCGCCGAGCGGCAGTGCACGCAGCCTACGTGAGTGTGGGGCCCAGGGTGCCC-TGCGCA---ATGGGACAGAGGGACCCAA-GC--AGTCAGCTGATT-GCA-G-GAGCTTGGCTCTGTCCCAGCCCCTGGCTCTGAGAAGTGTCCTCATAATGGTCAGTCC--GAG--TGTCCA-G-GCCACCTTGAGTCACTTTCAAGCAGTGCTCTGGGGGCTGACAGGGTCCCCACTGCTGAcccctttccagaga--------------------gcgggacactgaggcccagagactggagagactcatcagaggccacatggcaaa-gcagctgctggttggaaggaggcaggagagggcagtggcgaagagcatgggccctggaccttagatggctctgagttcgaatcctctgtt------------------------cac------------ccctt--------ctc---------
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1319893 405 +  24206276 AGCTGTGGCCTGGGCATACAGAACGCCGAGCAGCAGTGCACGCAGCCTACGTGAGTGTGGGGCCCAGGGTGCCC-TGGGCA---ATGGGACAGAGGGACCCAA-GC--AGTCAGCCGATT-GCA-G-GAGCTTGGCTCTGTCCCAGCCCCTGGCTCTTAGAAGTGTCCTCATAATGGTCAGTCC--GAG--TGTCCA-G-GCCACCTTGAGTCACTTTCAAGCAGTGTTCTGGGGACTGACAGGGTCCCCACTGCTGAcccctttccagaga--------------------gggggacactgaggcccagagactggagagactcatcagaggccacatggcaaa-gcagctgctggctggaaGGAGGCAGGAGAGGGCAGTGGGGAAGA------GCCCTGCACCTTAGATGGCTCTGAGTTCGAATTCCCTctt------------------------cac------------ccctt--------ctc---------
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3904844 411 +   4030761 AGCTGTGGCGTGGGCGTACAGAGCGCCGAGCGGCAGTGCACACAGCCTACGTGAGTGTGGGGCCCAGGGTGCCC-TGGGCA---ATGGGACAGAGGGACCCAA-GC--AGTCAGCTGATT-GCA-G-GAGCTTGGCTCTGTCCCAGCCCCTGGCTCTTAGAAGTGTCCTCATAATGGTCAGTCC--GAG--TGTCCA-G-GCCACcttaagtcactttcaagcagtgttctgggggctgacagggtccccactgctgacccctttccagaga--------------------gcgggacactgaggcccagagactggagagactcatcagaggccacatggcaaa-gcagctgctggctgggaggagacaggagagggcagtggcgaagagcatgggccctggaccttaaatggctctgagttcgaatcctctgtt------------------------cac------------ccctt--------ctc---------
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4019800 411 +   5013933 AGCTGTGGCGTGGGCGTACAGAGCGCCGAGCGGCAGTGCACACAGCCTACGTGAGTGTGGGGCCCAGGGTGCCC-TGGGCA---ATGGGACAGAGGGACCCAA-GC--AGTCAGCTGATT-GCA-G-GGGCTTGGCTGTGTCCCAGCCCCTGGCTCTTAGAAGTGTCCTCATAATGGTCAGTCC--GAG--TGTCCA-G-GCCACCTTGAGTCACTTtcaaggagtgttctgggggctgacagggtccctactactgacccctttccagaga--------------------gggggacactgaggcccagagactggagagactcatcagaggccacatggcaaa-gcagctgctggctggaaggaggcaggagagagcagtggcaaagagcatgggccctggaccttagatggctctgggttcgaatcctctgtt------------------------cac------------ccctt--------ctc---------
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113740955 409 - 132174527 AGCTGTGGTGTGGGCGTGCAGAGCGCTGAGCGGCAGTGCACGCAACCTGCGTGAGTGTGGGGCCCAGGGTGCCC-TGGGCG---ATGGGACAGAGGGACCCAA-GC--AGTCAGCCAATG-TCA-G-GAGCTTGGCTCTATCCGAGCCCCTGGCTCTTAGAAGTGTCCTCATAACGGTCAGTCC--GAG--TGTTCA-G-ACCACCTTGAGTCACTTTCAAGGAGTGTACTG-GGGCTGACA-GGTCCCCACTGCTGAcccctttgcagaga--------------------gggggacactgaggcccagagactagagagacttatcacaggccacagagtaaa-gcagccgccggctggagggaggaaggagagggcagtggggaagagcgtgggccctggaccttagatggctcagggtttgaatcccctctt------------------------cac------------ccctt--------ctc---------
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   79338 409 -    125141 AGCTGTGGCATGGGCGTGCAGAGCGCTGAGCGGCAGTGCACGCAGCCTGCGTGAGTGTGGGGCCCAGGGTGCCC-TGGGCG---ATGGGACAGAGGGACCCAA-GC--AGTCAGCCAATT-GCA-G-GGGCTTGGCTCTGTCCCAGCCCCTGGCTCTTAGAAGTGTCCTCATAACGGTCATTCC--GAG--TGTCCA-G-GCCACCTTGAGTCACTTTCAAGGAAGGTTCTG-GGGCTGACA-GGTCCCCACCGCTGAcccctttgcagaga--------------------gagggacactgaggcccagagactagagagactcatcagaggccacatggcAAA-GCAGCCACCGGCTGGAGggaggacagagagggcagtggggaagagcgtgggccctggaccttagatggctcagggtttgaatcccctctt------------------------cac------------ccctt--------CTC---------
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             88224 408 +  11725426 AGCTGTGGTGTGGGCGTGCAGAGCGCTGAGCGGCAGTGCACGCAGCCTGCGTGAGTGTGGGGCCCAGGGTGCCC-TGGGCA---ATGGGACAGAGGGACCGAA-GC--AGTCAGCCGATT-GCA-G-GAGCTTGGCTCTGTCCCGGCCCCTGGCTCTTAGAAGTGTCCTCATAATGGTCAGTCC--AAG--TGTCCA-G-GCCACATTGAGTCACTTTCAAGGAGGGTTCTG-GGGCTGACa-ggtccccactgctgacccctttgcagaga--------------------gggggacactgaggcccagagactagagagactcatcagaggccacacggcaaa-gcagCCTCCGGCTGGAGggaggacggagagggcagtgggg-agagcgtgggccctggacctcagatagctcagggtttgaatcccctctt------------------------cac------------ccctt--------CTC---------
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            680785 405 +    730879 AGCTGTGGCGTGGGCGTGCAGAGCGCTGAGCGGCAGTGCACGCAGCCTGTGTGAGTACGGGGCCCA-GGTGCCC-TGGGCG---ATGGGACAGAGGGACCCAA-GC--AGTCAGCCGATG-GCA-G-GAGCTTGGCTCTGTCCCAGCCCCTGGCTCTTAGAAGTGTCCTCATAACGGTCAATCT--GAG--TATCCA-G-GCCATCTTGAGTCACTTTCAAGGAGTGTTCTG-GGGCTGACA-GGTCCCCCCTGCTGAcccctttgcaaaga--------------------cggggacactgaggcccagagactagaaagactcatcagaggccacacggcaaa-gcagccgccagctggagggaggacGGAGAGGGCAGTGGGGAAGAGCGTGGGCCCTGGACCTTAGATGGCTCAGGGTTTGaatcc---ctt------------------------cac------------ccctt--------ccc---------
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5778198 414 -  36342412 AGCTGTGGCGTGGGTGTGCAGAGCGCTGAGCGGCAGTGCACACAGCCTGCGTGAGTGTGGGGCCCTGGGGCACC-CAAGGT---GTGGGATCAAGGGACTCAA-GCAGAGTCAGCCAGTT-GTGTG-GAGCTT-GCTGTGTCCCAGCCCCCAGGTTTTAGGAGTGTCCCTATAATGGCGAAGCCTGGAG--GGTCTA-G-GCCACATTTGATCACTCCCAGGGAGTGTTTTGAAGGCTGATAGGATCTTCCTTGCAGATC--------------------------------TGCGACCACTGAGGTCTAGAGAATGGAAAGACTCATCAGGGGCCACACAACAAA-GTAGCAGCTGg------aggggcaggagaaggcagtggttaggagcatagcccatg-------gatggatcagggctcaaatcctctcttcacctcttgggcaagggccttctgcac------------ccctt--------ctc---------
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90187017 387 + 124595110 AGCTGTGGCGTGGGTGTACGGAGTTCTGAACGACAGTGCACGCAGCCTGTGTGAGTGTGGGGCCCAGG-----C-----------TGGGAGAGAGGATCCGAATGG--AGCCAGCTGAGA-GCA---GAGACTGCCTCTGTTTCAGCCTCCATCTCTCAGAAGTGTCCTTGGAATGGTCAAGTC--CAG--TGTCTA-A-GCCACCACGGGCCACTCCCAGGGAGTGTTCTGGAAGC------GTTGCTCAGAGCTGACACGATAGCCAAGA--------------------GGGGAGTGCT--CTCCAAGAGCCGGGGGAGATGCA-CAGAGACCTTGCTGCAAAGGCAGTGGCT-GCAGGGAGGAGGATGCAAAGGTGAATG---------------CTTAGAACCAGGGAGGCTTAGGGTCTAGGTCCTCTGTC------------------------CCCACACAAGTGCCTTCCTT--------CTC---------
i mm10.chr9                      C 0 I 11
s canFam3.chr3                    58209583 383 +  91889043 AGCTGTGGCGTGGGTGTGCAGAGTGCTGAGCGGCAGTGCACACAGCCTGTGTGAGTGCGGG--TCTGGGCGCAG-CAGGGATGGGTGGGCCTGGGTGCCCTGA-GCAGAGTCAGCCTACC-ATG-GAGAGCCTGGCTCTGTGCCAGCCTCCTGGGCTCCAAAGCGTCCCCATAGAAGCCATGCC--CAGCATATCCAGG-GCCACCCTG-GTCACT-CAGAGGGGCACCCCAGAGGCCAGCAGAGTCCCCAGTGTTGACCGTGCTGCAGACA----------------------GGAACACCAAGGCTCAG-------------------------------CATT-GCAGTAACTGGCTGGAGGGAGGcaggagaggccaggggtgatgagcttagactctggaccttagacggatcagggttcagatcctctctg------------------------cac------------ttCTC--------CTT---------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  842970 427 +   1727078 AGCTGTGGTGTGGGTGTGCAGAGTGTGGAGCGGCAGTGCACACAGCCTGCGTGAGTGCGGG-CCCAGG--GCCT-GGGGCA-GGGCGGGACTGGGGGGCCTGA-GC--AGTCAGCCCTTCAGGG-G-GAGCTTGGCTCTGTCCCAGACGCCCTCTCTCAGAAGTGTCCCCGGAGAGACTATGTCCAGGG--CATCTA-GAACCGCCTCGGGCCATGCCCAGGGAGTGTCTGGAGGGCTGACAGGGTCCCCTCTGCTGAACCCGTTGCAGAGC--------------------GGGCAATACCAAGGCCCAGAGACTGGAGGGATTCATCAGAGGCCA--TGACAAA-GCAACAGCT-CCAGGAGGGAGGcaggacagggcagtggtt-agagcttagaccctggacctcaggtggatgagggttcagataccctctc------------------------cat------------ccctcaggcaaggcccttaacttcc
i dasNov3.JH579681               C 0 C 0

a score=114237.000000
s hg38.chr15_KI270850v1_alt          28128 9 +    430880 tgggcctcc
s panTro5.chr15                   59804831 9 +  83230942 tgggcctcc
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23054207 9 -  99763055 tgggcctcc
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            321700 9 -    378907 tgggcctcc
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      2147 9 -     28805 tgggcctcc
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59989183 9 + 169600520 TGGGCCTCG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61592208 9 + 171882078 tgggcctct
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3910335 9 +   4820037 tgggcctcc
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9772833 9 +  10730278 tgggcctct
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1320298 9 +  24206276 tgggcctct
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3905255 9 +   4030761 tgggcctct
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4020211 9 +   5013933 tgggcctcc
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113741364 9 - 132174527 tgggcctcc
i calJac3.chr10                  C 0 C 0
s cebCap1.NW_016107334v1             88632 7 +  11725426 --TGCCTCC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            681190 9 +    730879 tgggcctcc
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5778612 9 -  36342412 tgggcctca
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90187415 9 + 124595110 TGGGCCTCA
i mm10.chr9                      I 11 C 0
s canFam3.chr3                    58209966 9 +  91889043 TGGGTCTCT
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  843397 9 +   1727078 ctggcctca
i dasNov3.JH579681               C 0 C 0
e saiBol1.JH378378                   79747 0 -    125141 C

a score=68101.000000
s hg38.chr15_KI270850v1_alt          28137 7 +    430880 gtttccc
s panTro5.chr15                   59804840 7 +  83230942 atttccc
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23054216 7 -  99763055 atttccc
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            321709 7 -    378907 gtttccc
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      2156 7 -     28805 gtttccc
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59989192 7 + 169600520 TTTTCCC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61592217 7 + 171882078 gtttccc
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3910344 7 +   4820037 gtttccc
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9772842 7 +  10730278 gtttccc
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1320307 7 +  24206276 gtttccc
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3905264 7 +   4030761 gtttccc
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4020220 7 +   5013933 gtttcct
i colAng1.NW_012114844v1         C 0 C 0
s cebCap1.NW_016107334v1             88639 7 +  11725426 GTTTCCC
i cebCap1.NW_016107334v1         C 0 I 16
s aotNan1.NW_018503093v1            681199 7 +    730879 gtttccc
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5778621 7 -  36342412 ggttccc
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90187424 7 + 124595110 GTTTGGT
i mm10.chr9                      C 0 I 1
s canFam3.chr3                    58209975 6 +  91889043 ATTTCC-
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  843406 7 +   1727078 gtttcct
i dasNov3.JH579681               C 0 C 0
e calJac3.chr10                  113741373 0 - 132174527 C
e saiBol1.JH378378                   79747 0 -    125141 C

a score=10035.000000
s hg38.chr15_KI270850v1_alt          28144 1 +    430880 c
s panTro5.chr15                   59804847 1 +  83230942 c
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23054223 1 -  99763055 c
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            321716 1 -    378907 c
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      2163 1 -     28805 c
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59989199 1 + 169600520 C
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61592224 1 + 171882078 c
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3910351 1 +   4820037 c
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9772849 1 +  10730278 c
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1320314 1 +  24206276 c
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3905271 1 +   4030761 c
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4020227 1 +   5013933 c
i colAng1.NW_012114844v1         C 0 C 0
s aotNan1.NW_018503093v1            681206 1 +    730879 c
i aotNan1.NW_018503093v1         C 0 I 10
s otoGar3.GL873530                 5778628 1 -  36342412 t
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90187432 1 + 124595110 C
i mm10.chr9                      I 1 C 0
s dasNov3.JH579681                  843413 1 +   1727078 c
i dasNov3.JH579681               C 0 C 0
e calJac3.chr10                  113741373 0 - 132174527 C
e canFam3.chr3                    58209981 0 +  91889043 C
e cebCap1.NW_016107334v1             88646 16 +  11725426 I
e saiBol1.JH378378                   79747 0 -    125141 C

a score=1422480.000000
s hg38.chr15_KI270850v1_alt          28145 221 +    430880 acctgtataa--------ta---------gcagtgcccatccagtaaagttgtagtcaggggcaaatgcagtttatgcaggccagcccctcagc------------------cctgcagctcatctgtagtgggcactc----agc-aGGAG--GGGCTTGGTGGCCTCAGAGGCACAACAAGGGCCTGAGATGAGAT--GGAGCAGCTGGGAGGATGGGACAGCACTGAAGGGgtgg-------cctgaggt--ga-gtgacttcacctctctg
s panTro5.chr15                   59804848 223 +  83230942 gtctgtataa--------ta---------gcagtgcccatccagtaaagttgtagtcaggggcaaatgcggtttacgcaggccaggtcctcagc------------------cctgcagctcatctgtagtgggcactc----aGC-GGGAG--GGGCTTCTTGGCCTCAGGGACACAGCGAGAGTCTGAGATGAGACTGGGGGCAGCTGGGAGGATGGGACAGCACTGAAGGGgtgg-------cctgaggt--ga-gtgacttcacttctctg
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23054224 221 -  99763055 gtctgtataa--------ta---------gcagtacccatccagtaaagttgtagtcaggggcaaatgcagtttatgcaggccaggccctcagc------------------cctgcagctcatctgtagtgggcactc----aGC-GGGAG--GGGCTTGGTGGCCTCAGAGGCTCAACAAAGCTCTGAGATGAGAC--GGAGCAGCTGGGAGGATGGGACAGCACTGAAGGGgtgg-------cctgaggt--ga-gcgacttcacctctctg
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            321717 221 -    378907 acctgtataa--------ta---------gcagtgcccatccagtaaagttgtagtcaggggcaaatgcagtttatgcaggccagcccctcagc------------------cctgcagctcatctgtagtgggcactc----aGC-AGGAG--GGGCTTGGTGGCCTCAGAGGCACAACAAGGGCCTGAGATGAGAT--GGAGCAGCTGGGAGGATGGGACAGCACTGAAGgggtgg-------cctgaggt--ga-gtgacttcacctctctg
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      2164 221 -     28805 atctgtataa--------ta---------gcagtgcccatccagtaaagctgtagtcaggggcaaatgcagtttacgcagaccaggccctcagc------------------cctgcagctcatctgtagtgggcactc----aGC-AGGAG--TGGCTTGGTGGCCTCAGAGGCACAACAAGGGTCTGAGATGAGAC--GGAGCAGCTGGGAGGATGGGACAGCACTGAAGGGgtgg-------cctgaggt--ga-gtgacttcacctttctg
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59989200 223 + 169600520 ATCTATATAA--------CA---------GCAGTACCCATCCAGTAAAGTTGTAGTCAGGGGCAAATACAGTTTTTGCAGGCCAGGCCCTCAGT------------------CTTGCAGCTCGTCTGTAGGGGGCACTC----AGC-GGGAG--GGGCTTGGTGGCCTCAGAGGCACAACAAGAGTCTGAGATGAGACTGGGGGCAGCTGGGAGGATGGGCCAGCACTGAAGggatgg-------cctgaggt--ga-atgacttcacctctctg
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61592225 223 + 171882078 atctatataa--------ca---------gcagtgcccatccagtaaagttgtagtcaagggcaaatgcagtttttgcaggccaggccctcagT------------------CTTGCAGCTCGTCTGTAGGGGGCACTC----AGC-GGGAG--GGGCTTGGTGGCCTCAGAGGCACAACAAAGGTCTGAGATGAGACCGGGGGCAGCTGGGAGGATGGGCCAGCACTGAAGggatgg-------cctgaggt--ga-gtgatttcacctctctg
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3910352 221 +   4820037 gtctatgtaa--------ca---------gcagtgcccatccagtaaagttgtagttgggggcaaatgcagtttacacaggccaggccctcagt------------------tttgcagctcgtctgtagtgggcactc----agt-GGGAG--GGGCTTGGTGGCCTCACAGGCACAACAAAGGTCTGAGATGAGAC--AGGGCAGCTTGGAGGAGATGACAGCATTCAAGgggtgg-------cctgaggt--ga-gtgacttcacctctctg
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9772850 221 +  10730278 atctatataa--------ca---------gcagtgcccatccagtaaagttgtagtcgggggcaaatgcagtttacgcaggccaggccctcagt------------------tttgcagctcgtctgtagtgggcactc----agt-GGGAG--GGGCTTGGTGGCCTCAGAGGCACAACAAAGGTCTGAGATGAGAC--AGGGCAGCTTGGAGGAGGTGACAGCATTCAAGgggtgg-------cctgaggt--ga-gtgacttcacctctctg
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1320315 221 +  24206276 atctatataa--------ca---------gcagtgcccatccagtaaagttgtagtcaagggcaaatgcagtttttgcaggccaggccctcagT------------------CTTGCAGCTCGTCTGTAGGGGGCACTC----AGC-GGGAG--GGGCTTGGTGGCCTCAGAGGCACAACAAAGGTCTGAGATGAGGC--AGGGCAGCTTGGAGGAGGTGACAGCATTCAAGgggtgg-------cctgaggt--ga-gtgacttcacctctctg
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3905272 221 +   4030761 atctatataa--------ca---------gcagtgcccatccagtaaagttgtagtcgggggcaaatgcagtttacgcaggccaggccctcagt------------------tttgcagctcgtctgtagtgggcactc----agt-GGGAG--GGGCTTGGTGGCCTCAGAGGCACAACAAAGGTCTGAGATGAGAC--AGGGCAGCTTGGAGGAGGTGACAGCATTCAAGgggtgg-------cctgaggt--ga-gtgacttcacctctctg
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4020228 222 +   5013933 gtctatataa--------ta---------gcagtgcccatccagtaaagttgtagtcgggggcaaatgcagtttatgcaggccaggccctcagt------------------tttgcagctcgtctgtagtgggcactc----aGC-GGGAG--GGGCTTGGTGGCCTCAGAGGCACAACAAAGGTCTGAGATGAGAC--AGGGCAGCTTGGAGGAGGTGACAGCATTCAAGgggtgg-------cctgaggt--gaggtgacttcacctctctg
i colAng1.NW_012114844v1         C 0 C 0
s otoGar3.GL873530                 5778629 220 -  36342412 atctgtataatggagcagta---------gcagtgccctcctgatgaagtcatcgtcaggtgtaaatgcaattgacacagcaaaggtgtctagc------------------cctgcacataggccataggcaacacac----aGC-TGGGG--CTGCTTAGTGGCATCAGAGTTGCCACATGGGTCTAGGATGAGAT--TGGGTAGCACTGAACAGGTGgctgt---------gtgg-------cctgaggt--aa-gtgacttcacttttctg
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90187433 183 + 124595110 TAATAGGTAC--------TA---------GCAGAGCCTTCCTAGTCAAGTTGTCATT--GGGTAAAGTCAGGTAATATGGGGAAGGCACGGAAC------------------CTTCC--TTGTGCTGCGGGAAACGCCC----AGC-ACAAGCTGAGATTGT----------------------ATCTGAGATTGGCT-----GCAGCTGAGAGAATGGGGCAGTACTGGTGGGGTGG-------CTGTAGCTTCGG-GTGA-------------
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58209981 209 +  91889043 ------------------------------------------AGGGAAACTGGACTCTGGGGTGACCGCAG------------GGCCCCCCAGCAGAGCTAAAACATGAAAACCTGCAACTAGTAGGTAGAAAGCACTT----AGTAAGGAC--TCACTTATTGGCCTCGGACGCAC-ATATGGGTCTGAGATGAGAG--GGGATGGCTGGGAGAGCTGGTTGGCTTGGAAGGCGTgttgtgtaccctggggc--aa-gtggcttcacctctctg
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  843414 221 +   1727078 -actgtatga--------taggggcaaatgcagaatgcaccaagtagagttgctgtcaggggtaaatgcagttaatgcagctaaagcgttta-c------------------cctgctcctaatccatagtaagtgctcaatgaGC-CAGAG--CTGCTTAGCAGCATCAGAGGTACAACCTGGGCTTAAGATGAGAT-------TGCTGGGAGAGTTGGACAGCACAGAAGGGATGG-------C------T--GT-GGGACTCCCcctctcag
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            681207  10 +    730879 I
e calJac3.chr10                  113741373   0 - 132174527 C
e cebCap1.NW_016107334v1             88646  16 +  11725426 I
e saiBol1.JH378378                   79747   0 -    125141 C

a score=64310.000000
s hg38.chr15_KI270850v1_alt          28366 7 +    430880 gatctct
s panTro5.chr15                   59805071 7 +  83230942 ggcctct
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23054445 7 -  99763055 ggcctct
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            321938 7 -    378907 gatctct
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      2385 7 -     28805 ggcctct
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59989423 7 + 169600520 ggcctct
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61592448 7 + 171882078 ggcctct
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3910573 7 +   4820037 ggcctct
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9773071 7 +  10730278 ggcctct
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1320536 7 +  24206276 ggcctct
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3905493 7 +   4030761 ggcctct
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4020450 7 +   5013933 ggcctct
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                   79747 7 -    125141 GGCCTCT
i saiBol1.JH378378               C 0 C 0
s otoGar3.GL873530                 5778849 7 -  36342412 ggcctca
i otoGar3.GL873530               C 0 C 0
s canFam3.chr3                    58210190 7 +  91889043 ggcctca
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  843635 7 +   1727078 ggcccca
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            681207 10 +    730879 I
e mm10.chr9                       90187616 0 + 124595110 C
e calJac3.chr10                  113741373 0 - 132174527 C
e cebCap1.NW_016107334v1             88646 16 +  11725426 I

a score=120098.000000
s hg38.chr15_KI270850v1_alt          28373 27 +    430880 gtttccccatc-taaatgggggg-gcgca-----------------------
s panTro5.chr15                   59805078 27 +  83230942 gtttccccatc-taaacgggggg-gtGCA-----------------------
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23054452 27 -  99763055 gtttccccatc-taaacgggggg-gtGCA-----------------------
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            321945 28 -    378907 gtttccccatc-taaatggggGGTGCGCA-----------------------
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      2392 22 -     28805 gtttccccatc-taaacggggag-----------------------------
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59989430 21 + 169600520 attt-cccgtc-taaacggggTG-----------------------------
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61592455 22 + 171882078 gtttccccatc-taagcggggTG-----------------------------
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3910580 22 +   4820037 gtttccccgtc-taaacagtggg-----------------------------
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9773078 22 +  10730278 gtttccccgtc-taaacagtggg-----------------------------
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1320543 22 +  24206276 gtttccccatc-taagcggggTG-----------------------------
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3905500 22 +   4030761 gtttccccgtc-taaacagtggg-----------------------------
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4020457 22 +   5013933 gtttccctgtc-taaacggtggg-----------------------------
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113741373 19 - 132174527 gtttccccatt-taaacggt--------------------------------
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   79754 18 -    125141 GTTTCCCTGTT-TAAACGG---------------------------------
i saiBol1.JH378378               C 0 C 0
s otoGar3.GL873530                 5778856 22 -  36342412 gtttccccttc-tgaaaGGATTG-----------------------------
i otoGar3.GL873530               C 0 I 1
s mm10.chr9                       90187616 22 + 124595110 GCCTTCTCATC-TAAAGGGGGCT-----------------------------
i mm10.chr9                      C 0 I 2
s canFam3.chr3                    58210197 23 +  91889043 gtttccccaccttaaaaaggaTG-----------------------------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  843642 45 +   1727078 gtttcccgatt-gaaaggatggg------aagaatattccttaccttgtggg
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            681207 10 +    730879 I
e cebCap1.NW_016107334v1             88646 16 +  11725426 I

a score=-14937.000000
s hg38.chr15_KI270850v1_alt          28400 5 +    430880 ggggg-
s panTro5.chr15                   59805105 5 +  83230942 GGGGG-
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23054479 5 -  99763055 GGGGG-
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            321973 5 -    378907 GGGGG-
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      2414 1 -     28805 ----g-
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59989451 1 + 169600520 ----G-
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61592477 1 + 171882078 ----G-
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3910602 1 +   4820037 ----g-
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9773100 1 +  10730278 ----g-
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1320565 1 +  24206276 ----G-
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3905522 1 +   4030761 ----g-
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4020479 1 +   5013933 ----g-
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113741392 4 - 132174527 -gggg-
i calJac3.chr10                  C 0 I 1
s saiBol1.JH378378                   79772 4 -    125141 -GGGG-
i saiBol1.JH378378               C 0 I 1
s aotNan1.NW_018503093v1            681217 4 +    730879 -gggg-
i aotNan1.NW_018503093v1         I 10 I 1
s mm10.chr9                       90187640 3 + 124595110 --AGG-
i mm10.chr9                      I 2 C 0
s canFam3.chr3                    58210220 1 +  91889043 ----A-
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  843687 5 +   1727078 -ggtgc
i dasNov3.JH579681               C 0 C 0
e cebCap1.NW_016107334v1             88646 16 +  11725426 I
e otoGar3.GL873530                 5778878 1 -  36342412 I

a score=1553388.000000
s hg38.chr15_KI270850v1_alt          28405 161 +    430880 tgtgaagatctggtgagaAGCAGAGGCCAGTGGTACTGTAGACC-GA---GGCACTACC--------CGGC---------TGA--TC--------TTCACTTCAGGAGGCCA-CCCGGGGCAGGCATGGGGTTCACAGTCGGCCCCACCCAGGGCCCTGCGCTTACCCAAGAC--TGGCCTGTGCCCC-------TCCCTGC
s panTro5.chr15                   59805110 161 +  83230942 TGTGAAGATCTGGTGAGAAGCAGAGGCCAGTGGTACTGTAGACC-GA---GGCACTACC--------CGGC---------TGA--TC--------TTCACTTCAGGAGGCCA-CCCGGGGCAGGCATGGGGTTCACAGCCAGCCCCACCCAGGGCCCTGCGCTTACCCAAGAC--TGGCCTGTGCCCC-------TCCCTGC
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23054484 161 -  99763055 TGTGAAGATCTGGTGAGAAGCAGAGGCCAGTGGTACTGTAGACC-GA---GGCACTACC--------CGGC---------TGA--TC--------TTCACTTCAGGAGGCCA-CCCGGGGCAGGCATGGGGTTCACAGCCAGCCCCACCCAGGGCCCTGCGCTTACCCAAGAC--TGGCCTGTGCCCC-------TCCCTGC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            321978 161 -    378907 TGTGAAGATCTGGTGAGAAGCAGAGGCCAGTGGTACTGTAGACC-GA---GGCACTACC--------CGGC---------TGA--TC--------TTCACTTCAGGAGGCCA-CCCGGGGCAGGCATGGGGTTCACAGCCAGCCCCACCCAGGGCCCTGCGCTTACCCAAGAC--TGGCCTGTGCCCC-------TCCCTGC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      2415 161 -     28805 tGTGAAGATCTGGTGAGACGCACAGGCCAGTGGTACTGTAGACT-GA---GGCACTACC--------TGGC---------TGA--TC--------TTCATTTCTGGAGGCCA-CCTGGGGCAGGCATGGGGTTCACAGCCAGCCCCACCCAGGGCCCTGCACTTACCCAAGAC--TGGCCTGTGCCCC-------TCCCTGC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59989452 162 + 169600520 TGTGAAGATCTGCTGAGACACAGACGCCAGTGGTACCGTAGAACTGA---GGCACTACC--------CGGC---------TAA--TC--------TTCACTTCAGGAGGCCA-CCTGGGGCAGACATGGGGTTCACAGCCAGCCCCAGCCAGGGCACTATGCTTATCCAAGAC--TGGCCTGTGGCCC-------TCCCTGC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61592478 162 + 171882078 TGTGAAGATCTGCTGAGACGCAGAGGTCAGTGGTACCGTAGACCTGA---GGCACTATC--------TGGC---------TAA--TC--------TTCACTTCAGGAGGCCA-CCCGTGGCAGGCATGGGGTTCACAGCCAGCCCCACCCAGGTCCCTGTGCTTATCCAAGAC--TGGCCTGTGGCCC-------TCCCTGC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3910603 161 +   4820037 TGTGAAGATCTGGTGAGATTCAGAGGCCAGTGGTACTGTAGACCTGA---GGCACTACC--------TGGC---------TAA--TC--------TTCACTTCCGGAGGCCA-CCTGGGGCAGGCATGGGGTTCACAGTCAGCCCCACCCAGGGCCCTGTGCTTACCCAAGAC--TGGCCTGTGGCCC-------T-CCTGC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9773101 161 +  10730278 TGTGAAGATCTGGTGAGATGCAGAGGCCAGTGGTACTGTAGACCTGA---GACACTACC--------TGGC---------TAA--TC--------TTCACTTCCAGAGGCCA-CCTGGGGCAGGGATGGGGTTCACAGTCAGCCCCACCCAGGGCCCTGTGCTTACCCAAGAC--TGGCCTGTGGCCC-------T-CCTGC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1320566 161 +  24206276 TGTGAAGATCTGCTGAGACGCAGAGGTCAGTGGTACCGTAGACCTGA---GGCACTACC--------TGGC---------TAA--TC--------TTCACTTCCAGAGGCCA-CCTGGGGCAGGCATGGGGTTCACAGCCAGCCCCACCCAGGGCCCTGTGCTTATCCAAGAC--TGGCCTGTGGCCC-------T-CCTGC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3905523 161 +   4030761 TGTGAAGATCTGGTGAGATGCAGAGGCCAGTGGTACTGTAGACCTGA---GACACCACC--------TGGC---------TAA--TC--------TTCAGTTCCGGAGGCCA-CCTGGGGCAGGCATGGGGTTCACAGTCAGCCCCACCCAGGGCCCTGTGCTTACCCAAGAC--TGGCCTGTGGCCC-------T-CCTGC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4020480 158 +   5013933 TGTGAAGATCTGGTGAGATGCAGAGGCCAGTGGCACTGAAGATC------GAGGCTACC--------TGGC---------TGA--TT--------TTCACTTCAGGAGGCCA-CCCGGGTCAGGCATGGGGTTCACAGCCAGCCCCACCCAGGACCCTGTGCTTACCCAAGAC--TGGCCTGTGGCCC-------T-CCTGC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113741397 153 - 132174527 tgTGAGGATCTGGTAAGACGCAGAGCCAAGCAGTACCATAGACT-GT---GGCACTGCC--------CAGC---------TGA--TT--------CCC--------AGGCCA-CCCAGGGAAGGCATGGGGTTCACAGCCAGCCCCACCCAGGGCCCTGTGCTTGGCTAAGAC--TGGCCTGTGCCCC-------TCCCTGC
i calJac3.chr10                  I 1 C 0
s saiBol1.JH378378                   79777 160 -    125141 TGTGAGGATGTGGTGAGGCACAGAGCCCAGCAGTACCGTAGACT-GA---GGCACTGCC--------CAGC---------TGA--TT--------CCCTCTTCTCGAGGCCA-CCCAGGGGAGGCATGGGGTTCACAGCCAGCCCCACCCA-GGCTCTGTGCTTGGCTAAGAC--TGGCCTGTGCTCC-------TCCCTGC
i saiBol1.JH378378               I 1 C 0
s cebCap1.NW_016107334v1             88662 161 +  11725426 TGTGAGGATCTGATGAGACGCAGAGCCCAGCAGTACCGTAGACT-GA---GGCACTGCC--------CAGC---------TGA--TT--------TCCTCTTCACGAGGCCA-CCCAGGGAAGGCATGGGGTTCACAGCCAGCCCCACCCAGGGCCCTGTGCTTGGCTAAGAC--TGGCCTGGGCTCC-------TCCCTGC
i cebCap1.NW_016107334v1         I 16 C 0
s aotNan1.NW_018503093v1            681222 161 +    730879 tGTGAGAATCTGGTGAGACGCAGAGCCCAGCAGTACCGTAGACC-GA---GGCACTGCC--------CAGC---------TGA--TT--------CCCTCTTCACGAGGCCA-CCCAGGGAAGGCATGGGGTTCACAGCCAGCCCCACCCAGGGCCCTGTGCTTGGCTAAGAC--TGGCCTGTGCCCC-------TCCCTGC
i aotNan1.NW_018503093v1         I 1 I 598
s otoGar3.GL873530                 5778879 162 -  36342412 TGTGAAGATGCAGTGAATAGC------CAGTGGTGCCATGTGCC-GG---AGGGCTGTCAGCCCCTTTGGC---------TGA--GC--------CCCTTTTTACTAGGCTG-CTTCGGGTACGCACATGGTTCAGAGCCAG-CCCACCTGGGGCCTGGTGCTTGGCAAAGAC--AGTGGCTTCCTCG-------TCCCTGT
i otoGar3.GL873530               I 1 C 0
s mm10.chr9                       90187643 148 + 124595110 -----AGACTTAATGAAACAAGGG-------------GCAGACT-GGCTTGGCCCCACT--------GGGC---------AAACTTC--------TTTGCTT-----GGCTG-CCAGGG--AGG--TGGAATTCACAGCCAGTTCCATCTGAGGGATGGTACTTCACCAGGCCCATGGTCCCTATCCCCAGCATGTCCCTGC
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58210221 135 +  91889043 TCTGAAGATTCAG-GAGATGCTGAG-CCAGCAGTAGTACAGACC-GA---GGAGATACC--------TGGC---------TCC--TTGGGACGAGCCCTCTTCGCAAGGCTG-CCCTGGCCA-GTGTGGGACTCAAAGCCAGCCCCACCCAGGGC-CTGTGCC---------------------------------------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  843692 139 +   1727078 tgtgacacctcagcgagatGCAGAAGCCAGCGGTACCATGGACC-AA---GGGGCAGCC--------CAGCCACTTCGGATGA--GC--------CCCTCTTCACGGGGCTGTCCCAGGGCAG--ATGGGGCTGGT-TTCAGCCCCATTTAGGGTCCCAT------------C--TAG------------------------
i dasNov3.JH579681               C 0 C 0

a score=3497260.000000
s hg38.chr15_KI270850v1_alt          28566 355 +    430880 CTCCTGGCCTCCAGGTCTGAGCTGAGTGGAGGCCAGCGACCCTGGCCTAAATGTGGA-G-GATTTCAGGAGCTGTGCTCCATCATACCTTTCAGCTGGCTGGGGCCCTGGGCGC-TTCCTTTAGACCCAGGCTGGGGGTACTGCCACCAGGAGGAAGGCTGAGGACTCAAGGGCTCGTTAGGATGCTGG-TGTCATGGGCTGGAGACTCGGATTAGTCCCTCCAGCCAGTGCCAGTcatgcctgcagcttgtcccagcttctcaacagccctctgcaggggcagccccaaccccactttatacatgaggaaactgaggcccagagggtggccgaagacttgtccacgatcacacagcag
s panTro5.chr15                   59805271 355 +  83230942 CTCCTGGCCTCCAGGTCTGAGCTGGGTGGGGGCCAGCGACCCTGGCCTAGATGCGGA-G-GATTTCAGGAGCTGTGCTAGGTCAGACCTTTCAGCTGGCTGGGGCCCTAGGCAC-TTCCTTTAGACCCGGGCTGGGGGTACTGCCACCAGGAGGAAGGCTGAGGACTCAAGGGCTCGTTAGGATGCTGG-TATCATGGGCTGGAGACTCAGAGCAGTCCCTCCAGCCagtgctagtcatgcctgcagcttgtcccagcttctcaacagccctctgcagaagcagccccaaccccactttatacatgaggaaactgaggcccagagggtggccgaagacttgcccacagtcacactgtag
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23054645 353 -  99763055 CTCCTGGCCTCCAGGTCTGAGCTGGGTGGGGGCCAGCGACCCTGGCCTAGATGCGGA-G-GATTTCAGGAGCTGTGCTAGGTCAGACCTTTCAGCTGGCT-GGGCCCTAGGCAC-TTCCTTTAGACCCGGGCT-GGGGTACTGCCACCAGGAGGAAGGCTGAGGACTCAAGGGCTCGTTAGGATGCTGG-TTTCATGGGCTGGAGACTCGGAGCAGTCCCTCCAGCCAGTGCCAGTGatgcctgcagcttgtcccagcttctcaacagccctctgcaggggcagccccaaccccactttatacatgaggaaactgaggcccagagggtagccgaagacttgcccacagtcacactgtag
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            322139 354 -    378907 CTCCTGGCCTCCAGGTCTGAGCTGGGTGGGGGCCAGCGACCCTGGCCTAAATGTGGA-G-GATTTCAGGAGCTGTGCTCCGTCAGACCTTTCAGCTGGCTGGGGCCCTGGACGC-TTCCCTTAGACCCGGGCT-GGGGTACTGCCACCAGGAGGAAGGCTGAGGACTCAAGGGCTCGTTAGGATGCTGG-TGTCATGGGCTGGAGACTCGGAGTAGTCCCTCCAGCCAGTGCTAGTCATGCCTGCAGCTTGTCCCAGcttctcaacagccctctgcaggggcagccccaaccccactttatacatgaggaaactgaggcccagagggtggccgaagacttgtccaccatcacacagcag
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      2576 355 -     28805 CTCCTGGCCTTCAGGTCTGAGCTGGGTGGGGGCCAGCGACCCTGGCCTAGATGCGGA-G-GATTTCAGGAGCTGTGCTCAGTCAGACCTTTCAGCTGGCTGGGGCCCTGGGCGC-TTCCTTTAGACCTGGGCTGGGGGTACTGCCACCAGGAGGAAGGCTGAGGACTCAAGGGCTTGTTAGGATGCTGG-TGTCATGGGCTGGAGACTCGGAGCAGTCCCTCCAGCCAGTGCCAGTcatgcctgcagcttgtcccagcttctcaacagccctctgcagaggcagccccaaccccactttatacatgaggaaactgaggcccagaggatggccgaagacttgcccacggtcacacagcag
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59989614 354 + 169600520 CTCCTGACCTCCAGGTCTGAGCTGGGTGGGGGCCAGCAACCCTGGCCTAGATGCGGA-G-GGTTTCAGGAGCTGTGCTCGGTCAGACCTCTCACCTGGCTGGGGCCCTGGGCAC-TTCCTTTAGGCCCGGGCT-GGGGTACTGCCACCAGGAGGGAGGCTGAGGACTCAAGGGCTCGTTAGGATGCTGG-TGTCATGGGCTAGAGACTCGGTGCAGTCCCTCCAGCCAGTGCCAGTCATGCCTGCaacttgtcccagcttttcaacagccctctgcagaggcagcccaaacctcactttatacaggaggaaattgaggcccagaggctggccgaagacttgcccatggtcacacagcag
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61592640 354 + 171882078 CTCCTGACCTCCAGGTCTGAGCTGGGTGGGGGCCAGTGACCCTGGCCTAGATGCAGA-G-GGTTTCAGGAGCTGTGCTCGGTCAGACCTCTCAGCTGGCTGAGGCCCTGGAAGC-TTCCTTTAGATCCGGGCT-GGGGTACTGCCACCAGGAGGGAGGCCGAGGACGCAAGGGCTCGTTAGGATGCTGG-TGTCATGGGCTAGAGACTTGGAGCAGTCCCTCCAGTCAGTGCCAGTCATGCCTGAAGCTTGTCCCAGCTtctcaacagccctctgcagaggcagccccaaccccactttatacaggaggaaaccgaggcccagagggtggccgaagacttgcccacagtcacacagcag
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3910764 354 +   4820037 CTCCTGGCCTCCAGGTCTGAGCTGGGTGGGGGTCAGCGACCCTGGCCTAGATGCAGA-G-GGTTTCAGGAGCTGTGCTCGGTCAGACCTCTCAGCTGGCTGGGGCCCTGGGCGC-TTCCTTTAGGCCCGGGCT-GGGGTACTGCCACCAGGAGGGAGGCTGAGGACTCAAGGGTTCGTTAGGATGCTGG-TGTCATGGGTCGGAGACTTGGAGCAGTCCCTCCAGCCAGTGCCAGTcatgcctacagcttgtcccagcttctcaacagccctctgcagaggcagccccaacctcactttatactggaggaaactgaggcccagagggtggctcaagacttgcccccgatcacacagcag
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9773262 354 +  10730278 CTCCTGGCCTCCAGGTCTGAGCTGGGTGGGGGCCAGCGACCCTGGCTTAGATGCAGA-G-GGTTTCAGGAGCTGTGCTCGGTCAGACCTCTCAGCTGGCTGGGGCCCTGGGAGC-TTCCTTTAGGCCCGGGCT-GGGGTACTGCCACCAGGAGGGAGGCTGAGGACTCAAGGGCTTGTTAGGATGCTGG-TGTCATGGGTCGGAGACTTGGAGCAGTCCCTCCAGCCAGTGCCAGTcatgcctacagcttgtcccagcttctcaacagccctctgcagaggcagccccaacctcactttatactggaggaaactgaggcccagagggtggctcaagacttgcccccgatcacacagcag
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1320727 354 +  24206276 CTCCTGGCCTCCAGGTCTGAGCTGGGTGGGGGCCAGTGACCCTGGCCTAGATGCAGA-G-GGTTTCAGGAGCTGTGCTCGGTCAGACCTCTCAGCTGGCTGAGGCCCTGGGAGC-TTTCTTTAGATCCGGGCT-GGGGTACTGCCACCAGGAGGGAGGCCGAGGACGCAAGGGCTCGTTAGGATGCTGG-TGTCATGGGCTAGAGACTTGGAGCAGTCCCTCCAGTCAGTGCCAGTCATGCCTGAAGCTTGTCCCAGCTtctcaacagcgctctgcagaggcagccccaaccccactttatacaggaggaaaccgaggcccagagggtggccgaagacttgcccacagtcacatagcag
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3905684 354 +   4030761 CTCCTGGCCTCCAGGTCTGAGCTGGGTGGTGGTCAGTGACCCTGGCTTAGATGCAGA-G-GGTTTCAGGAGCTGTGCTCGGTCAGACCTCTCAGCTGGCTGGGGCCCTGGGAGC-TTCCTTTAGGCCCGGGCT-GGGGTACTGCCACCAGGAGGGAGGCTGAGGACTCAAGGGCTCGTTAGGATGCTGG-TGTCATGGGTCGGAGACTTGGAGCAGTCCCTCCAGCCAGTGCCAGTcatgcctacagcttgtcccagcttctcaacagccctctgcagaggcagccccaacctgactttatactggaggaaactgaggcccagagggtggctcaagacttgcccccgatcacacagcag
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4020638 355 +   5013933 CTCCTGGCCTCCAGGTCTGAGCTGGCTGGGGGCCAGCGACCCTGGCTTAGATGCAGA-G-GGTTTCAGGAGCTGTGCTCAGTCAGACCTCTCAGCTGGCTGGGGCCCTGGGCGC-TTCCTTTAGACTCGGGCTAGGGGTACTGCCACCAGGAGGGAGGCCGAGGACTCAAGGGCTCGTTAGGATGCTGG-TGTCATGGGCTGGAGACTCGGAGCAGTCCCTCTAGCCAGTGCCAGTcatgcctgcagcttgtcccagcttctcaacagccctctgcagaggcagccccaacctcactttatactggaggaaactgaggcccagagggtggctgaagacttgcccccaatcacacagcag
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113741550 347 - 132174527 CTCCTGATCTCCAGCTCTGAGCTGGGTTGGGTCCAGCTACCCTGGGCTAGATGGGGA-G-GGTTTCAGGAGCTGTGACTGGGCAGACCTCTCAGCTGGCTGGGGCCCTGGGGGCTTTTTTTTACACCCGGGCTCGGGGAACTGCCACCAGGAGGGAGACTGAGGACTCAAGGGCTCGTTAGGATGCTGG-TGTCATGGGTTGGGGACTCTGAGCAGTCCCTCCAGTCAGTGCCAGTCATGCCTGCAGCTTGTCGCAGCTTCTCAACAGCCCTCTTCAGAGTCAGCCccaaccccattttacaga---------tgaggcccagggagtggccagagacttgcccacagtcacacagcag
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   79937 355 -    125141 CTCCTGACCTCCAAATCTGAGCTGGGTTGGGTCCAGCTACCCTGGCCTAGATCGGGA-G-GGTTTCAGGAGCTGTATCTGGGCAGACCTCTCAGCTGGCTGGGGTCCTGGGGGC-TTTTTTTACACCCAGGCTGGGGGAACTGTCGCCAGGAGGGAGGCTGAGGACTCACATGCTCGTTAGGACGCTGG-TGTCATGGGCTGGGGACTCGGAGCAGTCCCTCCAGTCAGTGCCAGTcatgcctgcagcttgtcgcagcttctcaacagccctctgcagagtcagccccacccccattttacggatgaggaaactgaggcccaggggttggccagagacttgcccacagtcacacagcag
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             88823 355 +  11725426 CTCCAGACCTCCAGGTCTGAGCTGGGTTGGGTCCAGCTACCCTGGCCTACGTGGGGA-G-GGTTTCAGGAGCTGTGACTGGGCAGCCCTCTCAGCTGGCTGGGGCCCTGGGGGC-TTTTTTTACACCCAGGCTGGAGGAACTGCCACCAGGAGGGAGGCTGAGGACTCAAGGGCTTGTTAGGACGCTGG-TGTCATGGGCTGGGGACTCGGAGCAGTCCCTCCAGTCAGTGCCAGTcatgcctgcagcttgttacaacttctcaacagccctctgcagagtcagccccaaccccattttacagatgaggaaactgaggcccagggggtggccagagacttgcccacagtcacacagcag
i cebCap1.NW_016107334v1         C 0 C 0
s otoGar3.GL873530                 5779041 336 -  36342412 CTGCTGGCCTGCAGGTGTGGACTGGGTTGGG-CTGGCTGCCCTGGCCTAGGGGAACA-GAGAGCTCAGGTACCATGCTCTGGCAGACCTCTTGGCTAGTTGGGG--------GC-CTCCTTTTGACCCA-GCT-GAAATGCTGTGACCAGCAGTGGGTGTGAGGACTCAAGGGCTCTTTGGGACACTGG-GTCTCCTGCCTGGAGACATAGAGAAG-CCTCCCAGCCAGTGCCCGTCATGTCCACTGCTTG--------tctcagcagccctctgcccaggcagtcccagccccattttatagatgaggaaactgaggcccagagagtggctgaaggcttgcccatggttacatagcag
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90187791 272 + 124595110 --------CTCCAGCTC--AGCCAATGTGGGGCTGG----CTTGGCTTGGATGGGGT-A-CAGGTTAGATGCCAAGCCAAGGTAG----------TTTCTGGGG-CCTGGAGGC-TTCCTTT-GACCTGGCCCAGGTATGCTGCACCCAGGAACAACTCTAACAACCCAAG-------------GCTAG----------------------------CCCATCA---------------GCCCACTACATGTTCTAGcctcttagtagccctct-tagaggca-ttccaactccattttagagagaaggagactgaggtccggaacatggcagtgcatttgctcatggtcacacagcag
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58210356 234 +  91889043 -----------------TGGGCTGGGCTGGGGGCTGCCACCCTGGCCCAGATGAGGGTG-GGGGTCAGCTGCTGTGCT---------------------------TCTGGGCAC-GCCTCTCAG--CCAGGCTAGGTG----------AGGAACAAGCCTGCAGACCTGTGGG-------------------------------------------------------GCACCAGCCACATCCCTGGCTCATCACAGGGtcgtagcagccctctgaaggggaagccccatccctgtcttacaggccagcgaactggagctcagacag-gGATGAAG-----------GGCGCCCTGCAG
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  843831 298 +   1727078 -----GGCCTCCAGGTCTGAGCTTGG--------AGTTCCCCAGGTGCAGAT------G-GGGTTCGGGTGCTGCACTCAGGCAGGTCCATCAGCCAGGTAGGGCCCAGGAGGC-TTCCTCTTGACCTGGGCT-GGGGTGCTGCC----------------------------------AGGATGCTGGGTCTCGTGGGCCAGAGGCTTGGAGCAGCCCCTCCAGAAAATGTCGGTcatgtctgcagcttgttcctgcctcccagtggtcctctacagaggcagtattggcc-cattttatagatgaggacactgaggccctgaaa--ggtcaaagacttgcccaaaatcacatgag--
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            681383 598 +    730879 I

a score=217410.000000
s hg38.chr15_KI270850v1_alt          28921 27 +    430880 gttgggggcagagctcagg---cttcCTGC
s panTro5.chr15                   59805626 27 +  83230942 gttgggggcagagctcagg---cttcCTGC
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23054998 27 -  99763055 gttgggggcagagctcagg---cttcCTGC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            322493 27 -    378907 gttgggggcagagctcagg---cttcCTGC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      2931 27 -     28805 gttgggggcagagctcagg---cctcCTGC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59989968 27 + 169600520 gttgggggcagagctcagg---cttcCTGC
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3911118 27 +   4820037 gttgggggcagagctcagg---cttcCTGC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9773616 27 +  10730278 gttgggggcagagctcagg---cttcCTGC
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3906038 27 +   4030761 gttgggggcagagctcagg---cttcCTGC
i manLeu1.NW_012102632v1         C 0 I 7599
s colAng1.NW_012114844v1           4020993 27 +   5013933 gttgggggcagagctcagg---cttcCTGC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113741897 27 - 132174527 gttggggagagagctcagg---ctTACTGC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   80292 27 -    125141 gttggggacagagctcagg---cttcCTGC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             89178 27 +  11725426 gttggagacagagctcagt---cttcCTGC
i cebCap1.NW_016107334v1         C 0 C 0
s otoGar3.GL873530                 5779377 13 -  36342412 gtggcgggcagag-----------------
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90188063 29 + 124595110 -ctctgggctgagcctgagggtcttcttgc
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58210590 18 +  91889043 GGTGGGCGCAGAGCCCAG------------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  844129 27 +   1727078 gttaggggcagagcccagg---cttcCTAC
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            681383 598 +    730879 I
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C

a score=624764.000000
s hg38.chr15_KI270850v1_alt          28948 95 +    430880 TGCCACCTCCCCACAGGTCCCTACAGACAGGGAGGGTGTGTCTGGGCCACAGGGTGGGCAACCCAA----GGGAGGGA-----AGCAGCGTGC--ACAA------AGCTGGG
s panTro5.chr15                   59805653 95 +  83230942 TGCCACCTCCCCGCAGGTCCTTACAAACAGGGAGGGTGTGTCTGGGCCAGAGGGTGGGCAGCCCAA----GGGAGGGG-----AGCAGCGTGC--ACAA------AGCTGGG
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23055025 95 -  99763055 TGCCACCTCCCCACAGGTCCTTACAAACAGGGAGAGTGTGTCTGGGCCAGAGGGTGGGCAGCCCAA----GGGAGGGG-----AGCAGCGTGC--ACAA------AGCTGGG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            322520 95 -    378907 TGCCACCTCCCCACAGGTCCTTACAGACAGGGAGGGTGTGTCTGGGCCACAGGGTGGGCAACCCAA----GGGAGGGG-----AGCAGCGTGC--ACAA------AGCTGGG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      2958 95 -     28805 TGCCACCTCCCCGCAGGTCCTTACAAACAGGGAGGGTGTGTCTGGGCCAGAGGGTGGGCAGCCCAA----GGGAGGGG-----AGCAGCGTGC--ACAA------AGCTGGG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59989995 95 + 169600520 TGCCACCTCCCCACAGGTCCTTACAAACAGGGAGGGTGTGTCTGGGCCAGAGGGTGGGCAGCCCAA----GGGAGGGA-----AGCATTGTGC--ACAA------AGCTGGG
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3911145 95 +   4820037 TGCCACCTCCCCACAGGTCCTTACAAACAGGGAGGGTGTGTCTGGGCCACAGGGTGGGCAGCCCAA----GGGAGGAG-----AGCAGCGTGC--ACAA------AGCTGGG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9773643 94 +  10730278 TGCCA-CTCCCCACAGGTCCTTACAAACAGGGAGGGTGTGTCTGGGCCACAGGGTGGGCAGCCCAA----GGGAGGAG-----AGCAGCGTGC--ACAA------AGTTGGG
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3913664 95 +   4030761 TGCCACCTCCCCACAGGTCCTTACAAACAGGGAGGGTGTGTCTGGGCCAGAGGGTGGGCAGCCCAA----GGGAGGAG-----AGCAGCGTGC--ACAA------AGCTGGG
i manLeu1.NW_012102632v1         I 7599 C 0
s colAng1.NW_012114844v1           4021020 95 +   5013933 TGCCACCTCCCCGCAGGTCCTTACAAACAGGGAGGGTGTGTCTGGGCCAGAGGGTGGGCAGCCCAA----GGGAGGAG-----AGCAGCGTGC--ACAA------AGCTGGG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113741924 99 - 132174527 TGCCACTTCCCCTCAGGTCCTTACAAACAGGGAGGGTGTGTCTGGGCCAGAGCGGGGGCAGCCCACTCTGGAGAGTAG-----AGCAGTGTGC--GCAG------AGCTGGG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   80319 94 -    125141 CGCCACTTCCCTGCAGGTCCTTACAAACAGGGAGGGTGTGTCTGGGCCAGAGCCGGGGCAGCCCAC----GGGAGGAG-----AGCA-TGTGC--ACAG------AGCTGGG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             89205 94 +  11725426 TGCCACTTCCCCGAAGGTCCCTACAAACAGGGAGGGTGTGTCTGGGCCAGAGCAGGGGCAGCCCAC----GGGAGGAG-----AGCA-TGTGC--GCAG------AGCTGGG
i cebCap1.NW_016107334v1         C 0 C 0
s otoGar3.GL873530                 5779390 47 -  36342412 ----------------------------------------------------GGTGGGCAGCCTGA----GG--GGTG-----GGCAGCATGA--GCAAGGACTGAGCTGGG
i otoGar3.GL873530               C 0 I 5
s mm10.chr9                       90188092 84 + 124595110 tgccactcGTCTTTAGATCCTTGGAGACAGGGAGGGTGTATAT-------------GGCAGCCCCC----AAGGGCAA-----AGCAGCATGATGGGGA------GGGTGGG
i mm10.chr9                      C 0 I 4
s canFam3.chr3                    58210608 53 +  91889043 ----------------------------AGGGTGGGTGGGCGT-----------TGGACTCCCCGC----AGTTAGAGGTTGCAGGAGCTGCC--ACA--------------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  844156 79 +   1727078 TGTCACCTTCCCTT-GATCCTTAATGGTGGGGAGAATGTGTCTAGA------AGTGGGAAGCCCAA----GAGGGGAG--------------T--GCAA------AGGTGGG
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            681383 598 +    730879 I
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C

a score=3177609.000000
s hg38.chr15_KI270850v1_alt          29043 301 +    430880 CAGCAGGGATCTTGGGGTGT---GGGT-GCAGGAGGAAGCTGCTTGCTCTGGG---------CTGTGGCCATG----CAGTA-GCACTCACTGGGCCCTCACTGGGGTCCA--CCCCGGTTCTCCCCACAGGCCCAGATACAAAGGCAGATACTGTGTGGGTAAGCGGAAGCGCTTCCGCCTCTGCAACCTGCAGGCCTGCCCCGCTGGCCGCCC------------CTCCTTCCGCCACGTCCAGTGCAGCCACTTTGACGCTATGCTCTACGAGGGCCAGCTGCACACATGGGTGCCCATGGTCAATGACGGTGAGTGCTGCCTCCCATGG
s panTro5.chr15                   59805748 313 +  83230942 TGGCAGGGATCTTGGGGTGT---GGGT-GCAGGAGGAAGCTGCTTGCTCTGGG---------CTGTGGCCATG----CAGTA-GCACTCACTGGGCCCTCACTGGGGCCCA--CCCCGGTTCTCCCCATAGGCCCAAATACAAAGGCAGATACTGTGTGGGTGAGCGGAAGCGCTTCCGCCTCTGCAACCTGCAGGCCTGCCCTGCTGGccgcccctccttccgccactccttccgccacGTCCAGTGCAGCCACTTTGACGCTATGCTCTGCAAGGGCCAGCTGCACACATGGGTGCCTGTGGTCAATGACGGTGAGTGCTGCCTCCCATGG
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23055120 300 -  99763055 CAACAGGGATCTCAGGGTGT---GGGT-GCAGGAGGAAGCTGCTTGCTCTGGG---------CTGTGGCCACG----CAGTA-GCACTCACTGGGCCCTCACTGGGGCCCA--CCCCGGTTCTCCCCACAGGCCCAAATACAAAGGCAGATACTGTGTGGGTGAGCGGAAGCGCTTCCGCCTCTGCAACCTGCAGGCCTGCCCTGCTGGCCGCCC------------CTCCTTCCGCCACGTCCAGTGCAGCCACTTTGACGCTATGCTCTACAAGGGCCAGCTGCACACATGGGTGCCTGTGGTCAATGACGGTGAGTGCTGCC-CCCatgg
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            322615 301 -    378907 CAGCAGGGATCTTGGGGTGT---GGGT-GCAGGAGGAAGCTGCTTGCTCTGGG---------CTGTGGCCATG----CAGTA-GCACTCACTGGGCCCTCACTGGGGTCCA--CCCCGGTTCTCCCCACAGGCCCAAATACAAAGGCAGATACTGTGTGGGTAAGCGGAAGCGCTTCCGCCTCTGCAACCTGCAGGCCTGCCCCGCTGGCCACCC------------CTCCTTCCGCCACGTCCAGTGCAGCCACTTTGACGCTATGCTCTACAAGGGCCAGCTGCACACATGGGTGCCCATGGTCAATGACGGTGAGTGCTGCCTCCCATGG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      3053 301 -     28805 TGGCAGGGATCTCGGGGTGT---GGGT-ACAGGAGGAAGCTGCTTGCTCTGGG---------CTGTGGCCATG----CAGCA-GCACTCACTGGGCCCTCACTGGGGCCCA--CCCCGGTTCTCCCCACAGGCCCAAATACAAAGGCAGATACTGTGTGGGTGAGCGGAAGCGCTTCCGCCTCTGCAACCTGCAGGCCTGCCCCGCTGGCCGCCC------------CTCCTTCCGCCACGTCCAGTGCAGTCACTTTGACGCTATGCTCTACAAGGGCCAGCTGCACACATGGGTGCCCGTGGTCAATGACGGTGAGTGCTGCCTCCCATGG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59990090 297 + 169600520 TGGCAGGGATCTCGGGGTGT---GGGT-GCAGGAGGAAGCTGCTTGCTCTGGG---------CTGTGGCCAGG----CAGTA-GTATTCACCAGGCC----CTGGGGCCCA--CCCCTCTCATCCCCACCGACCCAAATACAAAGGCAGATACTGTGTGGGTGAGCGGAAGCACTTCCACCTCTGCAAGCTGCAGGCCTGCCCCACTGGCCGCCC------------CTCCTTCTGCCACGTCCAGTGCAGCCACTTTGACGCTACACTCTACGAGGGCCAGCTGCACACAAGGGTGCCCGTGGTCAATGACGGTGAGTGCTGCCTCCCATGG
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3911240 301 +   4820037 CGGCAGGGATCTTGGGGTGT---GGGT-GCAGGAGGAAGCCGCTCGCTCTGGG---------CTGTGGCCATG----CAGTA-GTATTCACCAGTCCCTCACTGGGGCGCA--CCCCGGTCCTCCCCACAGGCCCAAATACAAAGGCAGATACTGTGTGGGTGAGCGGAAGCGCTTCCGCCTCTGCAACCTACAGGCCTGCCCCGCTGGCCGCCC------------CTCCTTCCGCCACATCCAGTGCAGCCACTTTGACGCTATGCTCTACAAGGGCCAGCTGCACACATGGGTGCCCGTGGTCAATGACGGTGAGTGCTGCCTCCCatgg
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9773737 301 +  10730278 CGGCAGGGATCTTGGGGTGT---GGGT-GCAGGAGGAAGCCGCTCGCTCTGGG---------CTGTGGCCATG----CAGTA-GTATTCACCAGTCCCTCACTGGGGCGCA--CCCCGGTCCTCCCCACAGGCCCAAATACAAAGGCAGATACTGTGTGGGTGAGCGGAAGCGCTTCCGCCTCTGCAACCTGCAGGCCTGCCCCGCTGGCCGCCC------------CTCCTTCCGCCACATCCAGTGCAGCCACTTTGACGCTATGCTCTACAAGGGCCAGCTGCACACATGGGTGCCCGTGGTCAATGACGGTGAGTGCTGCCTCCCATGG
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3913759 301 +   4030761 CGGCAGGGATCTTGGGGTGT---GGGT-GCAGGAGGAAGCCGCTCGCTCTGGG---------CTGTGGCCATG----CAGTA-GTATTCACCAGTTCCTCACTGGGGCGCA--CCCCGGTCCTCCCCACAGGCCCAAATACAAAGGCAGATACTGTGTGGGTGAGCGGAAGCGCTTCCGCCTCTGCAACCTGCAGGCCTGCCCCGCTGGTCGCCC------------CTCCTTCCGCCACATCCAGTGCAGCCACTTTGACGCTATGCTCTACAAGGGCCAGCTGCACACATGGGTGCCCGTGGTCAATGACGGTGAGTGCTGCCTCCCatgg
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4021115 301 +   5013933 CGGCAGGGATCTCAGGGTGT---GGGT-GCAAGAGGAAGCCGCTCGCTCTGGG---------CTGTGGCCATG----CAGTA-GTATTCACCAGTCCCTCACTGGGGCGCA--CCCCGGTCCTCCCCACAGGCCCAAATACAAAGGCAGATACTGTGTGGGTGAGCGGAAGCGCTTCCGCCTCTGCAACCTACAGGCCTGCCCCGCTGGCCGCCC------------CTCCTTCCGCCACGTCCAGTGCAGCCACTTTGACGCTATGCTGTACAAGGGCCAGCTGCACACATGGGTGCCCGTGGTCAATGACGGTAAGTGCTGCCTCCCatgg
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113742023 290 - 132174527 TGGCAGGGATCTTGGGGTGC---GGGGAACAGGAGGAGGCCACTCGCTCTGGG---------CTGTGGCCATG----CAATA-GCACTCACCAGGCCCT--------------CCCTGCTTCTCCCCACAGACCCAAATACAAGGGCAAGTACTGTGTGGGCGAACGGACGCGTTTCCGCCTCTGCAACCTGCAAGCCTGCCCCGCTGGCCGCCC------------CTCCTTCCGCCACATCCAGTGCAGCCACTTTGACGCTATGCTCTACAAGGGCCAGCTGCACACATGGGTGCCTGTGGTCAATGACGGTGAGTGCTGCCTCCCACGG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   80413 289 -    125141 TGGCAGGGATCTCGGGGTGC---GGGT-ACAGGAGGAGGCCGCTCGCTCCAGG---------CTGTGGCCACG----CAGTA-GCACTCACCAGACCCT--------------CCCTGCGTCTCCCCACAGGCCCAAATACAAGGGCAAGTACTGCGTGGGCGAGCGGAAGCGTTTCCGCCTCTGCAACCTGCAAGCCTGCCCCGCTGGCCGCCC------------CTCCTTCCGCCACGTCCAGTGCAGCCACTTTGACGCTATGCTCTACAAGGGCCAGCTGCACACATGGGTGCCTGTGGTCAATGACGGTGAGTGCTGTCTCCCacgg
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             89299 289 +  11725426 TGGCAGGGATCTCGGGGTGT---GGGT-ACAGGAGGAGGCCGCTCACTCTGGG---------CTGTGGCCATG----CAGTA-GCACTCACCGGGCCCT--------------CCCTGCGTCTCCCCACAGGCCCAAATACAAGGGCAAGTACTGCGTGGGCGAGCGGAAGCGTTTCCGCCTCTGCAACCTACAAGCCTGCCCCTCTGGCCGCCC------------CTCCTTCCGCCACGTGCAGTGCAGCCACTTTGACGCTATGCTCTACAAGGGCCAGCTGCACACATGGGTGCCTGTGGTCAATGACGGTGAGTGCTGCCTCCCACGG
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            681981 289 +    730879 CAGCTGGGATCTCGGGATGC---AGGT-ACAGGAGGAGGCCGCTCGCTCCGGG---------CTGTGGCCACG----CAGTA-GCACTCACCGAGCCCT--------------CCCTGCTTCTCCCCACAGGCCCAAATACAAGGGCAAGTACTGCGTGGGCCAGCGGAAGCGTTTCCGCCTCTGCAACCTGCCAGCCTGCCCCGCTGGCCGCCC------------CTCCTTCCGCCACGTCCAGTGCAGCCACTTTGATGCTATGCTCTATAAGGGCCGGCTGCACACCTGGGTGCCTGTGGTCAATGACGGTGAGTGCTGCCTCCCATGG
i aotNan1.NW_018503093v1         I 598 I 126
s otoGar3.GL873530                 5779442 294 -  36342412 CAGCAGAAGTCTCTGGGTGTGAGGGAT-ACAGGAGGGGGCTGGTC--------------------TGGCCACG----TGGGAGGCACCCACTGTGCACTCACTGGGCCCCC--ACTTGGCTCCCCCCACAGGCCCAAGTACAAGGGCAAATACTGCGTGGGTGAGCGGAAACGCTTCCGCCTCTGCAACCTGCAGGCCTGCCCCCCTGGCCGCCC------------ATCCTTCCGCCATGTCCAGTGCAGCCAGTTTGATGCCATGCTCTACAAGGGCCAGCTGCACACATGGGTGCCTGTGGTCAGTGACGGTGAGTTCTGCTGCCCACGG
i otoGar3.GL873530               I 5 C 0
s mm10.chr9                       90188180 278 + 124595110 GGGCAGGGGACTCTGGGTGC---AGAA-G-ATGTAGATGTTGATTGGCATGGG-----------------AGC----TAATA-GCATACTCATAGCC----------------CCATGGCTTTCCTTACAGGCCTAAGAACAGAGGCAAGTACTGTGTGGGGGAGAGGAAGCGGTCCCAGCTCTGCAACCTGCCAGCCTGCCCGCCGGACCGTCC------------CTCTTTCCGTCACACCCAGTGTAGCCAGTTTGATGGCATGCTGTACAAGGGCAAGCTCCATAAATGGGTGCCTGTGCCCAATGACGGTGAGTTATGCTACCCACAC
i mm10.chr9                      I 4 C 0
s canFam3.chr3                    58210661 274 +  91889043 -----------------------TGGT-CCAAGGG---CCTGCTC---CTGGA---------CCGAGGT-ACA----CAGTAGGCACTCACTGTGTGCTCACTCAGCCCCA--CC-TGGCTCTCCTCACAGACCCAAATACAAGGGCAAGTACTGTGTGGGTGAACGGAAGCGCTTCCGCCTGTGCAACCTGCAGGCCTGCCCCCCCGGCCACCC------------CTCTTTCCGCCATGTGCAGTGCAGCCACTTTGACGCCATGCTCTACAAGGGCCAGCTGCACACGTGGGTGCCTGTGGTCAACGACGGTGAGTCCTGCCACCCATGG
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  844235 313 +   1727078 CAGTGGCAATCTCTGGGTGTTAGGGAT-GCAGACAGAGGCTGCTCACTCTGAGGACCCACTCCTGAATCCAGGTAAACAGTAGGTACTCACTGTGTACTCACTCATCCCCCTTACCTGGCTCTCCCCACAGGCCCAAATACAAAGGGAGATACTGTGTGGGTGAGCGGAAGCGCTACCGCCTGTGCAACCTGCAGTCCTGTCCCCCTGGCCACCC------------CTCCTTCCGCCAGGTCCAGTGCAGCCATTTTGATGCTATGTTATACAAGGGCCAGCTGCACACATGGGTGCCTGTGGTCAGTGATGGTGAGTCCTCTCT-------
i dasNov3.JH579681               C 0 C 0
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C

a score=373426.000000
s hg38.chr15_KI270850v1_alt          29344 69 +    430880 AAACATTGAGACTCAGAGGGC-GGCGAGCGGGGTGTGGGTCCAAGGTTACCCTGTGATGCAAGCAGGAGA
s panTro5.chr15                   59806061 67 +  83230942 AGACACTGAGGCTCAGAGGGCTGGTG---GGGGTGTGGGTCCAAGGTTACCCTGTGATGCGAGCAGGAGG
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23055420 66 -  99763055 agacattgaggctcagagggc-tggg---ggtgtgtgggtccaaggttaccctgtgatgcaagcaggaga
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            322916 69 -    378907 AAACATTGAGACTCAGAGGGC-GGCGAGCGGGGTGTGGGTCCAAGGTTACCCTGTGATGCGAGCAGGAGG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      3354 65 -     28805 AGACACTGAGGCTCAGAGGGC-GGG----GGGGTGTGGGTCCAAGGTTACCCTGTGATGCAAGCAGGAGG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59990387 66 + 169600520 AGACGCTGAGGCCCAGAGGGC-TGGG---GATGTGTGGGTCCAAGGTTACCCTGTGATGCAAGTAGGAGG
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3911541 66 +   4820037 agacactgaggctcagagggc-tggg---ggtgtgtgtgcccaaggttaccctgtgatgcaagcaggagg
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9774038 66 +  10730278 AGACACTGAGGCTCAGAGGGC-TGGG---GGTGTGTGTGTCCAAGGTTACCCTGTGATGCAAGCAGGAGG
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3914060 66 +   4030761 agacactgaggctcagagggc-tggg---ggtgtgtgtgtccaaggttaccctgtgatgcaagcaggagg
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4021416 66 +   5013933 agacactgaggctcagagggc-tggg---ggtgtgtgtgtccaaggttaccttgtgatgtaagcaggagg
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113742313 57 - 132174527 GGACACT--------GAGGGC-TGGG---GCTGTGTGCGCCCAAGGCTACCTTGCGATGC-AACAGGAGG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   80702 65 -    125141 ggacactgaggctcagagggc-tggg---gctgtgtgcgcccaaggctaccctgtgatgc-agtgggaga
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             89588 65 +  11725426 GGACACTGAGCCTCAGAGGGC-TGGG---GCTGTGTGCGCCCAAGGCTACCCTGTGATGC-AGCAGGAGG
i cebCap1.NW_016107334v1         C 0 C 0
s otoGar3.GL873530                 5779736 37 -  36342412 GGGCACTGAGGCTCAGAGGGC-TGGT--------------------------------GTAGGTGGGAGA
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90188458 49 + 124595110 GGATGTTGAGGCCCAGAGG---TGAG---GATGTATGGACCGCA---------GTGACAT----AGGA--
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58210935 39 +  91889043 TGACACTGAACCGCAG------GGGG---AGTCCGGGGGCCCGAGGTT----------------------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  844548 51 +   1727078 --------------AGAGGTG-TGGG---GCCATGTG-ACCTGAGGTCACCTAGGGGTGCAGGCAGGAGG
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            682270 126 +    730879 I
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C

a score=917132.000000
s hg38.chr15_KI270850v1_alt          29413 115 +    430880 CCCAGTCTCCACC-CCAAGCCTGGGCCACTCCCACTGTCCC--CTGGGGCTGCTGCTCGCCCCTAGCTCCCCAATCTGCAGCCT---TGCAGATAGCTACCAGCCCAGCCGGAGCCTCCAG
s panTro5.chr15                   59806128 115 +  83230942 GCCAGCCTCCAAC-CCAAGCCTGGGCCGCTCCCACTGTCCC--CTGGGGCTGCTGCTCACCCTTAGCTCCCCAGTCTGCAGCCT---TGCAGATAGCTATCAGCCCAGCTGGAGCCTCCAG
i panTro5.chr15                  C 0 I 56628
s panPan2.chr15                   23055486 115 -  99763055 cccagtctccacc-ccaagcctGGGCCACTCCCACTGTCCC--CTGGGGCTGCTGCTCGCCCCTAGCTCCCCAGTCTGCAGCCT---TGCAGATAGCTACCAGCCCAGCCGGAGCCTCCAG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            322985 115 -    378907 GCCAGCCTCCACC-CCAAGCCTGGGCCACTCCCACTGTCCC--CTGGGGCTGCTGCTCGCCCCTAGCTCCCCAGTCTGCAGCCT---TGCAGATAGCTACCAGCCCAGCCGGAGCCTCCAG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      3419 115 -     28805 CCCAGTCTCCACC-CTAAGCCTGGGCCGCTCCCACTGTCCC--CTGGGGCTGCTGCTCACCCCTAGCTCCCCAGTCCGCAGCCT---TGCAGATAGCTACCAGCCCAGCCGGAGCCTCCAG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59990453 115 + 169600520 CCCAGTCTCCACC-CCAAGCCTGGGCCACTCCCACTGTCCC--CTGGGGCTGCTGCTCACCCCTAGCTCCCCAGTCTGCGACCT---TGCAGATAGCTACCAGCCCAGCCGGAGCCTCCAG
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3911607 115 +   4820037 cccagtctccacc-ccaagcctgggcctctcccaatgtccc--ctggggctgctgctcacccCTAGCTCTCCAGTCTGCAGCCT---TGCAGATAGCTACCAGCCCAGCCGGAGCCTCCAG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9774104 115 +  10730278 CCCAGTCTCTACC-ACAAGCCTGGGCCTCTCCCAATGTCCC--CTGGGGCTGCTGCTCACCCCTAGCTCTCCAGTCTGCAGCCT---TGCAGATAGCTACCAGCCCAGCCGGAGCCTCCAG
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3914126 115 +   4030761 cccagtctccacc-ccaagcctgggcctctcccaatgtccc--ctggggctgctgctcacccCTAGCTCTCCAGTCTGCAGCCT---TGCAGATAGCTACCAGCCCAGCCAGAGCCTCCAG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4021482 114 +   5013933 cccagtctccacc-acaagcctgggctgcttccaatgtccC--CTGGGGCTGCTGCTCACCCC-AGCTCTCCAGTCTGCAGCCT---TGCAGATAGCTACCAGCCCAGCCGGAGCCTCCAG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113742370 113 - 132174527 CCCAGTCTCCACC-CCAAGCCTGAGCCACG-CCGCTGTGCC--CTGGGGCTGCTGCTC-CCCCTAGCTCCCCAGTCTGCAGCCT---TGCAGATAGCTACCAGCCCAGCTGGAGCCTCCAG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   80767 100 -    125141 ctcagtctccaac-ccaagc--------------ctgtgcc--ctggggctgctgctc-cccccagctccccagtctgcAGCCT---TGTAGATAGCTACCAGCCCAGCCGGAGCCTCCAG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             89653 111 +  11725426 CTCAGTCTCCACC-CCAAGCCTGGGCCA---CCGCTGTGCC--CTGGGGCTGCTGCTC-CTCCCAGCTCCCCAGTCTGCAGCCT---TGTAGACAGCTACCAGCCCAGCCGGAGCCTCCAG
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            682396 113 +    730879 CCCAGTTTCCACC-CCAAGCCTGGGCCGTG-CCACTGTGCC--CCGGGGCTGCTGCTC-CCCCCAGCTCCCCAGTCTGCAGCCT---TGCAGGTAGCTACCAGCCCAGCCGGAGCCTCCAG
i aotNan1.NW_018503093v1         I 126 C 0
s otoGar3.GL873530                 5779773  83 -  36342412 CCCAGTCGCC-----TGGCCCTTGGCTGTTACTGATGTTTG--CCAGGGCT--------------------------GCAGCCT---TGTAGAGAGCCACCAGCCCAGCCAGA--CTGCAG
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90188507  59 + 124595110 ----------CCC-TCAGGCCTTGG----------TGTCCCTGCTGGGAGAGCTGCTCATCTCTAGCTCCTCAGTCTGCG-----------------------------------------
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58210974  75 +  91889043 --------------CCACACCCTGG---------------C--CCTGGGTCATCGCCC-CCACCAGCTCTCCAGGGTGCAGCCCAGGGGTGGGAGGGGTCCGGCCCA--------------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  844599 114 +   1727078 -CCTATCCCCACTGCCAGGTCTGGGCTGCTCCCCAC-TTCC--TGGGGACTGCTGCTCATTCCTAGCTCTCCAGTCTGCAGTCT---TGCAGTTAGCTACCAGCCCAGAAGGAGCCTTCAG
i dasNov3.JH579681               C 0 C 0
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C

a score=126942.000000
s hg38.chr15_KI270850v1_alt          29528 28 +    430880 CATGTTTGTGCTGCTTGGGAGCCTCCAG
s panTro5.chr15                   59862871 28 +  83230942 CATGTTTGTGCTGCTTGGGAGCCTCCAG
i panTro5.chr15                  I 56628 T 56656
s panPan2.chr15                   23055601 28 -  99763055 CATGTTTGTGCTGCTTGGGAGCCTCCAG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            323100 28 -    378907 CATGTTTGTGCCGCTTGGGAGCCTCCAG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      3534 28 -     28805 CATGTTGGTGCTGCTTGGGAGCCTCCAG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59990568 28 + 169600520 CATGTTGGTGCTGCTTGGGAGCCTCTAG
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3911722 28 +   4820037 CATGTTGGTGCTGCTTGGGAGCCTCTAG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9774219 28 +  10730278 CATGTTGGTGCTGCTTGGGAGCCTCTAG
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3914241 28 +   4030761 CATGTTGGTGCTGCTTGGGAGCCTCTAG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4021596 28 +   5013933 CATGTTGGTGTTGCTTGGGAGCCTCTAG
i colAng1.NW_012114844v1         C 0 C 0
s otoGar3.GL873530                 5779856 20 -  36342412 --------GACTGCTTGGGAGCCTCTGG
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90188566  4 + 124595110 ------TGTG------------------
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58211049 19 +  91889043 ------TGTGCTGCCCCGGAG---CTGG
i canFam3.chr3                   C 0 I 5
s dasNov3.JH579681                  844713 28 +   1727078 AATTTTTGTGCTCCTTCGGAGCCTCATG
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            682509  0 +    730879 C
e calJac3.chr10                  113742483  0 - 132174527 C
e cebCap1.NW_016107334v1             89764  0 +  11725426 C
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C
e saiBol1.JH378378                   80867  0 -    125141 C

a score=169373.000000
s hg38.chr15_KI270850v1_alt          29556 20 +    430880 CCTGCCATGGAT-GTGTGTCA
s panTro5.chr15                   59806243 20 +  83230942 CCTGCCATGGAT-GTGTGTCA
i panTro5.chr15                  T 56656 I 56656
s panPan2.chr15                   23055629 20 -  99763055 CCTGCCATGGAT-GTGTGTCA
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            323128 20 -    378907 CCTGCCATGGAT-GTGTGTCA
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      3562 20 -     28805 CCTGCTATGGAT-GTGTGTCA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59990596 20 + 169600520 CCTGCTATGGAT-GTGTGTCA
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3911750 20 +   4820037 CCTGCTATGGAT-GTGTGTCA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9774247 20 +  10730278 CCTGCTATGGAT-GTGTGTCA
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3914269 20 +   4030761 CCTGCTATGGAT-GTGTGTCA
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4021624 20 +   5013933 CCTGCTACGGAT-GTGTGTCA
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113742483 20 - 132174527 CCTGCCATGGAA-GTGTGTCA
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   80867 20 -    125141 CCTGCCATGGAT-GTGTGTCA
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             89764 20 +  11725426 CCTGCCATGGAT-GTGTGTCA
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            682509 19 +    730879 -CTGCCATGGAT-GTGTGTCA
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5779876 13 -  36342412 -------CCGAG-ATGTGACA
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90188570 12 + 124595110 --TGTCATGGAG-GA------
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58211073 20 +  91889043 ATGGCCACGGAT-GTGTGCAA
i canFam3.chr3                   I 5 C 0
s dasNov3.JH579681                  844741 21 +   1727078 CGTTCTGTTGATGGCACGTTG
i dasNov3.JH579681               C 0 C 0
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C

a score=405269.000000
s hg38.chr15_KI270850v1_alt          29576 47 +    430880 CGGAGG-GG------TCTTCCTGGTGGCCTCC-AT-ACTCCCGCTCCAGCTGTTGC
s panTro5.chr15                   59862919 47 +  83230942 CGGAGG-GG------TCTTCCTGGTGGCCTGC-AT-ACTCCCACCCCAGCTGTGGC
i panTro5.chr15                  I 56656 C 0
s panPan2.chr15                   23055649 47 -  99763055 CGGAGG-GG------TCTTCCTGGTGGCCTCC-AT-ACTCCCACCCCAGCTGTGGC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            323148 47 -    378907 CGGAGG-GG------TCTTCCTGGTGGCCTCC-AT-ACTCCTGCTCCAGCTGTTGC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      3582 47 -     28805 TGGAGG-GG------TCTTCCTGGTGGCCTCC-AT-ACTCTTGCCCCAGCTGTTGC
i nomLeu3.chr6_GL398151_2_random C 0 I 10
s rheMac8.chr7                    59990616 47 + 169600520 CAGAGG-GG------TCTTCCTGGTGGCCTCC-AC-ACTCCTGCCCCAGCTGTTGC
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3911770 47 +   4820037 CAGAGG-GG------TCTTCTTGGTGGCCTTC-AC-ATTCCTGCCCCAGCTGTTGC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9774267 47 +  10730278 CAGAGG-GG------TCTTCTTGGTGGCCTTC-AC-ATTCCTGCCCCAGCTGTTGC
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3914289 47 +   4030761 CAGAGG-GA------TCTTCTTGGTGGCCTTC-AC-ATTCCTGCCCCAGCTGTTGC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4021644 53 +   5013933 CAAAGG-AGTCTTCCTCTTCCTGGTGGCCTCC-AC-ACTCCTGCCCCAGCTGTTGC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113742503 49 - 132174527 TGGAAG-GG------TCTTCCTGGTGGCCTCCAATAACTCCTGTCTCGGCTATCGC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   80887 48 -    125141 CGGAGG-GG------TCTTCCTGGTGCCCTCT-GTAACTCCTGCCCCGGCTGTCGC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             89784 48 +  11725426 CGGAGG-GG------TCTTCCTGGTGGCCTCC-ATAACTCCTGCCCCGGCTGTCGC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            682528 48 +    730879 CGGAGG-GG------TCTTCCCGGCGGCCTCC-CTAACTCCCGCCCTGGCTGTCGC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5779889 45 -  36342412 -TGGAA-GG------TCTTCA-GGTGG-CTCC-ACAACTCCTGCCCTGGCTGTCCC
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90188582 48 + 124595110 CGCAGG-GG------TCTTCCTGGTGGCCTCT-GTAATGCCTGCTCTTGGTGTCGC
i mm10.chr9                      C 0 I 1
s canFam3.chr3                    58211093 48 +  91889043 CGGATGCTG------TCTTACT-GTGACCTCC-CTGACTCCTGCCTGGGTTGTCCC
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  844762 48 +   1727078 CAGTGG-GG------TCTTCCTGACAGCCTCC-TTGACTCCTGGCCTGGCTGTCCC
i dasNov3.JH579681               C 0 C 0
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C

a score=2156487.000000
s hg38.chr15_KI270850v1_alt          29623 224 +    430880 TGATGACTCTTCTACTTGGG-CCCCCAGTGAACCCCTGTGAG-CTGCACTGCCGGCCCGCGAATGAGTACTTTGCCAAGAAGCTGCGGGACGCCGTGGTTGATGGCACCCCCTGCTACCAGGTCCGAGCCAGCCGGGACCTCTGCATCAATGGCATCTGTAAGGTGTGCCTGGTTAGGAAGAGG-CTCTCCCAGCACTGCCTGCCCCCAG--CCCCACTGGCGGGCCCC
s panTro5.chr15                   59862966 224 +  83230942 TGATGACTCTTCTACTTGGG-CCCCCAGTGAACCCCTGCGAG-CTGCACTGCCGGCCCGCGAATGAGTACTTTGCCGAGAAGCTGCGGGACGCCGTGGTCGATGGCACCCCCTGCTACCAGGTCCGAGCCAGCCGGGACCTCTGCATCAACGGCATCTGTAAGGTGTGCCTGGTTAGGAAGAGG-CTCTCCCAGCACTGCCTGCCCCCAG--CCCCACTGGCGGGCCCC
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23055696 224 -  99763055 TGATGACTCTTCTACTTGGG-CCCCCAGTGAACCCCTGTGAG-CTGCACTGCCGGCCCGCGAATGAGTACTTTGCCGAGAAGCTGCGGGACGCCGTGGTCGATGGCACCCCCTGCTACCAGGTCCGAGCCAGCCGGGACCTCTGCATCAACGGCATCTGTAAGGTGTGCCTGGTTAGGAAGAGG-CTCTCCCAGCACTGCCTGCCCCCAG--CCCCACTGGCGGGCCCC
i panPan2.chr15                  C 0 M 1000
s gorGor5.CYUI01015946v1            323195 225 -    378907 TGATGACTCTTCTACTTGAGCCCCCCAGTGAACCCCTGTGAG-CTGCACTGCCGGCCCGCGAATGAGTACTTTGCCGAGAAGCTGCGGGACGCCGTGGTTGATGGCACCCCCTGCTACCAGGTCCGAGCCAGCCGGGACCTCTGCATCAACGGCATCTGTAAGGTGTGCCTGGTTAGGAAGAGG-CTCTCCCAGCACTGCCTGCCCCCAG--CCCCACTGGCGGGCCCC
i gorGor5.CYUI01015946v1         C 0 C 0
s rheMac8.chr7                    59990663 224 + 169600520 TGATGGCTCTTCTACTTGGG-CCTCCAGTGAACCCCTGCGAG-CTGTACTGCTGGCCCTCAAATAAGTACTTTGCCAGGAAGTTGTGGGATGCCGTGGTCGATGGCACCCCCTGCTACCAGGTCCAGGCCAGCTGGGACCTCTGCATCAACAGCATCTGCAAGGTGTGCCTGGTTAGGAAGAGG-CTCTCCCAGTACTGGCTGCCCCCAG--CCCCACTGGCGGGCCCC
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3911817 223 +   4820037 TGACGGCTCTTCTACTTGGG-CCCCCAGTGAACCCCTGCGAA-CTGCACTGCCGGCCCTCGAATGAGTACTTTGCCGAGAAGCTGCGGGACGCCGTGGTCGATGGCACCCCCTGCTACCAGGTCCGGGCCAGCAGGGACCTCTGCATCAACGGCATCTGCAAGGTGTGCCTGGTTA-GAAGAGG-CTCTCCCAGCACTGGCTGCCCCCAG--CCCCACTGGTGGGCCTC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9774314 223 +  10730278 TGATGGCTCTTCTACTTGGG-CCCCCAGTGAACCCCTGCGAG-CTGCACTGCCGGCCCTCGAATGAGTACTTTGCCGAGAAGCTGCGGGACGCCGTGGTCGATGGCACCCCCTGCTACCAGGTCCGGGCCAGCAGGGACCTCTGCATCAACGGCATCTGCAAGGTGTGCCTGGTTA-GAAGAGG-CTCTCCCAGCACCGGCTGCCCCCAG--CCCCGCTGGTGGGCCTC
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3914336 223 +   4030761 TAATGGCTCTTCTACTTGGG-CCCCCAGTGAACCCCTGCGAA-CTGCACTGCCGGCCCTCGAATGAGTACTTTGCCGAGAAGCTGCGGGACGCCGTGGTTGATGGCACCCCCTGCTACCAGGTCCGGGCCAGCAGGGACCTCTGCATCAACGGCATCTGCAAGGTGTGCCTGGTTA-GAAGAGG-CTCTCCCAGCACCGGCTGCCCCCAG--CCCCACTGGCAGGCCCC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4021697 223 +   5013933 TGATGGTTCTTCTACTTGGG-CCCCCAGTGAACCCCTGCGAG-CTGCACTGCCGGCCCTCGAATGAGTACTTTGCCGAGAAGCTGCGGGACGCTGTGGTCGATGGCACCCCCTGCTACCAGGTCCGGGCCAGCAGGGACCTCTGCATCAACGGCATCTGCAAGGTGTGCCTGGTTG-GAAGAGG-CTCTCCCAGCACTGGCTGCCCCCAG--CCCCACTGGTGGGCCTC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113742552 224 - 132174527 TGATGGCTCTTCTACTTGG--CCCCCAGTGAACCCCTCTGTGACTGCACTGCCGGCCCTCGAATGAGTATTTTGCTGAGAAGCTGCGGGACACCGTGGTCGATGGCACCCCCTGCTACCAGGGCAGGGTCAGCCGGGACCTCTGCATCAACGGCATCTGCAAGGTGTGCCTGGTCAGGAAGAGG-CTCTCCCAGACTGCACCCCCCACAG--CCCCACTGGCAGGCCCC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   80935 223 -    125141 TGATGGCTCTTCTCCTTGG--TGCCCAGTGAACCCCTGTGAG-CTGCACTGCCGGCCCTCAAATGAGTATTTTGCCGAGAAGCTGCGGGACGCCGTGGTTGATGGCACCCCCTGCTACCAGGGCAGGGTCAGCCGGGACCTCTGCATCAATGGCATCTGCAAGGTATGCCTGGTCAGGAAGCAG-CTCTCCCAGCATCGCCCGCCCCCAG--CCCCACTGGCAGGCCCC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             89832 223 +  11725426 TGATGGCTCTTCTACTTGG--CCCCCAGTGAACCCCTGTGAG-CTGCACTGCCGGCCCTCGAATGAGTATTTTGCCGAGAAGCTGCAGGACGCCGTGGTCGATGGTACCCCCTGCTACCAGGGCAGGGTCAGCCGGGACCTCTGCATCAATGGCATCTGCAAGGTGTGTCTGGTCGGGAAGCGG-CTCTCTGAGCACCGCCTGCCCCCAG--CCCCACTGGCAGGCCCC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            682576 223 +    730879 TGATGGCTCTTCTACTTGG--CCCCCAGTGAACCCCTGTGAG-CTGCACTGCCGGCCCTCCAATGAGTATTTTGCCGAGAAGCTGCGGGACGCCGTGGTAGATGGCACCCCCTGCTACCAGGGCAGGGTCAGCCGGGACCTCTGCATCAATGGCATCTGTAAGGTGTGCCTGGTCAGGAAGCGG-CTCTCCCAGCACTGCCCGCCCCCAG--CCCCACTGGCTGGCCCC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5779934 218 -  36342412 TCATGGCTCTTCATTCTG---CCCACAGTGAACCCCTGCGAG-CTACACTGCCGGCCCTCAAACGAGTACTTTGCTGAGAAACTGAGGGATGCCGTGGTCGATGGCACACCCTGCTACCAGGGCCAGGCCAGCCGGGACCTCTGCATCAATGGCATCTGCAAGGTGTGCCTGGGTGGGAAGAGG---GTCCCGGCACCA-CTGCCC-CAG--ACCTGCTTGTTCTCCTC
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90188631 207 + 124595110 CCATGAGTCCTCCCCTTGCC-CCATCAGACAACCCCTGTGAG-CTGCACTGCCGGCCTTCCAACTCCTCCAATACAGAGAAGCTGAGGGATGCTGTGGTGGATGGCACCCCTTGCTACCAAAGCCGCATCAGCCGTGACATCTGCCTCAACGGCATCTGTAAGGTATGT-GGGAGAGGAGGAGG-TTCGCC----------------TAG--TCCTGCTGGCAGGCCCT
i mm10.chr9                      I 1 C 0
s canFam3.chr3                    58211141 225 +  91889043 TAACGGCCCCTCCACTTGGG-CCCCCAGCGAACCCCTGCGAG-CTGCACTGCCGGCCCTCCAATGAGTACTTTGCTGAGAAGCTTCGGGACGCTGTGATCGACGGCACCCCCTGCTACCAGGGCCAGCCTGGCCGTGACCTCTGCATCAACGGCATCTGCAAGGTGCGCCTGAGCAGAAAGAGG-GGCTCCCA-TGTTGGCTACCCCTGGGTCCCTCCTAGATCCCCCC
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  844810 224 +   1727078 TGATGGTTCCTCCACTTGGG-TCCCCAGTGAACCCCTGTGAG-CTGCACTGCCGGCCCTCGAACAAGTTCTTTGCTGAGAAGCTGCGGGACGCTGTGGTCGATGGCACCCCTTGCCACCAGGGCCAGGCCAGCCGTGACCTCTGCATCAACGGCATCTGCAAGGTGTGCCCAGATAGGGAGAGGGATCTCCCAGCACCACCTTCCCCT-G--CCCACCTGGTGGGTACC
i dasNov3.JH579681               C 0 C 0
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C
e nomLeu3.chr6_GL398151_2_random      3629  10 -     28805 I

a score=561706.000000
s hg38.chr15_KI270850v1_alt          29847 102 +    430880 AGGTTCTCTCCTGG-----------TCCTCCTCGGGCCACCCTCCCCATGCTCTACCATTGGGCTTCCCAGC-------CCCTACC-C--------TCTATGACCTCTAAGGCAAAGCCCC--TACCACGC--
s panTro5.chr15                   59863190 113 +  83230942 AGGTTCTCTCCTGGGTCCCTCCTGATCCTCCTTGGGCCACCCTCCCCATGCTCTACCATCGGGCTTCCCAGC-------CCGTACC-C--------TCTATGACCTCTAAGGCAAAGCCCC--TACCACGC--
i panTro5.chr15                  C 0 T 57040
s gorGor5.CYUI01015946v1            323420 102 -    378907 AGGTTCTCTCCTGG-----------TCCTCCTCGGGCCACCCTCCCCATGCTCTACCATTGGGCTTCCCAGC-------CCCTACT-C--------TCTATGACCTCTAAGGCAAAGCCCC--TACCACGC--
i gorGor5.CYUI01015946v1         C 0 C 0
s rheMac8.chr7                    59990887 113 + 169600520 AGGTTCTCTCCTGGGTCCCTCCTGGTCCTCTTCAGGCCACCCTCCCCATGTTCTACCATTGGGTTTCCCAGC-------CCCCACC-C--------TCTATGATCTCTAAGGCAAAGCCCC--TGCCATAC--
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3912040 113 +   4820037 AGGCTCTCTCCTGGGTCCCTCCTGGTCCTCCTCAGGCCACCCTCCCTATGCTCTACCTTTGGGCTTCCCAGC-------CCCTACC-C--------TGTATGACCTCTAAGGCAAAGCCCC--TACTATGC--
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9774537 113 +  10730278 AGGCTCTCTCCTAGGTCCCTCCTGGTCCTCCTCAGGCCACCCTCCCTATGCTCTACCTTTGGGCTTCCCAGC-------CCCTACC-C--------TCTATGACCTCTAAGGCAAAGCCCC--TACTATGC--
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3914559 113 +   4030761 AGGCTCTCTCCTGGGTCCCTCCTGGTCCTCCTCAGGCCACCCTCCCTATGCTCTGCCTTTGGTCTTCCCAGC-------CCCTACC-C--------TGTATGACCTCTAAGGCAAAGCCCC--TACTATGC--
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4021920 113 +   5013933 AGGTTCTCTCCTGGGTCCCTCCTGGTCCTCCTCAGGCCACCCTCCCCATGCTCTACCTTTGGGCTTCCCAGC-------CCCTACC-C--------TCTATGACCTCTAAGGCAACGCCCC--TACTATGC--
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113742776 108 - 132174527 AGGTTCTCCCCTGGGTCCCTCCTGGTCCTCT---GGCCACCCTCCCTATGCTCTACCATTGGG-TTTTCAGA-------CCCCACC-C--------TCTAT-ACCACTAAGGCAAAGCCCC--TACCAGGC--
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   81158 109 -    125141 AGATTCTCCCCTGGGTCCCTCCTGGTCCTCT---GGCCACCCTCCCCATGCTCTGCCATTGGGCTTCCCAGA-------CCCCACC-C--------TCTAT-ACCACTAAGGCAAAGCCCA--TACTAGGC--
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             90055 110 +  11725426 GGGTTCTCCCCTGGGTCCCTCCTGGTCCTCT---GGCCACCCTCCCCTTGCTCTGCCATTGGGCTTCCCAGA-------CCGCACCTC--------ACCTT-ACCACTAAGGCAAAGCCCC--TACCAGGC--
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            682799 109 +    730879 ATGTTCTCCCCTGGATCCCTCCTGGTCCTCT---GGCTACCCTCCCCATGCTCTGCCATTGGGCTTCCCAGA-------CCCCACC-C--------TCTAT-ACCACTAAGGCAAAGCCCC--TACCAGGC--
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5780152 107 -  36342412 ------------TGGTCCCTTCTGGTCTCCCTCTGGCTACCCTTCCCAGGCTGTACCACTGGGCTTTCCAGC-------CCCCCCC-CCCCCCACTCCCATGACATCTAAGGCAAAGCCCC--CGCCAC----
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90188838  88 + 124595110 GGGCCCACTGCCAGGG-CTTCCTGGCTTTCTCCAGGCT------------------------GCATCTGAGC-------CCCTGCT-G--------TCTG--ACTTTTAAGACACAGCCTCTGTGCCCTGC--
i mm10.chr9                      C 0 I 2
s canFam3.chr3                    58211366 105 +  91889043 -AGCCCTCTCC---------CCAGGCTGTCAGCAAAGAGCCCACCCC---TCCTGGCACTGGAGCTCCTTGCAGGTGAGCCTCACA-C--------CCCA--GCCTCTGCACCGTGGGCCC--TCCCACCC--
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  845034  76 +   1727078 AGGTCCTCCTCTGGGATCCTCCTGGTCCCCTTT----------------------------------------------GATGACC-T--------CCTGTTCCCTCTAGGGCAGAGCCCC--TCCACTGCTC
i dasNov3.JH579681               C 0 C 0
e panPan2.chr15                   23055920 1000 -  99763055 M
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C
e nomLeu3.chr6_GL398151_2_random      3629  10 -     28805 I

a score=329400.000000
s hg38.chr15_KI270850v1_alt          29949 127 +    430880 ----CTCCTGGCACTGGGGACC----CCCC------------CCAGTCAG--------GCCTCGC---------------------CCCACTGCGT---------------------------------CTCCTTGGATGCCTGCACCA-------------GCACCGCCCCagcca----------------ggaaaccggagcccaggcagtggcttgac---ctcttgctggctggct
s panTro5.chr15                   59806263 126 +  83230942 ----CTCCTGGCACTGGGGACC----CTCC------------C-AGTCAG--------GCCTCGC---------------------CCCCCTGCGT---------------------------------CTCCTTGGATGCCTCCACCA-------------GTACCGCCCCAGCCA----------------GGAAACCAGAGCCCAGGCAGTGGCTTGAC---CTCTTGCTGCCTGGCT
i panTro5.chr15                  T 57040 C 0
s gorGor5.CYUI01015946v1            323522 127 -    378907 ----CTCCTGGCACTGGGGACC----CCCC------------CCAGTCAG--------GCCTCGC---------------------CCCACTGCGT---------------------------------TTCCTTGGATGCCTGCACCA-------------GCACCGCCCCAGCCA----------------GGAAACCGGAGCCCAGGCAGTGGCTTGAC---CTCTTGCTGGCTGGCT
i gorGor5.CYUI01015946v1         C 0 C 0
s rheMac8.chr7                    59991000  93 + 169600520 ----CTCCTGGCACTGGGGACC----CCTC------------CCAGTCAG--------GACTCAC---------------------TTCCCTGCAT---------------------------------CTCCTTGGATGCCTGCACCA-------------GCACCACCCCAGACA----------------GGAAACTGGAG-------------------------------------
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3912153  92 +   4820037 ----CTTCTGGCACTGGGGACC----CCTA------------CCAGTCAG--------GCCTCGC----------------------CCCCTGCAT---------------------------------CTCCTTGGATGCCTGCACCA-------------GCATCGCCCCAACCA----------------GGAAACCAAAG-------------------------------------
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9774650  92 +  10730278 ----CTCCTGGCACTGGGGACC----CCTC------------CCAGTCAG--------GCCTCGC----------------------CCCCTGCAT---------------------------------CTCCTTGGATGCCTGCACCA-------------GCATCGCCCCAACCA----------------GGAAACCAAAG-------------------------------------
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3914672  92 +   4030761 ----CTCCTGGCACTGGGGACC----CCTC------------CCAGTCAG--------GCCTCGC----------------------CCCCTGCAT---------------------------------CTCCTTGGATGCCTGCACCA-------------GCATCGCCCCAACCA----------------GGAAACCAAAG-------------------------------------
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4022033  92 +   5013933 ----CTCCTGGCACTGGGGACC----CCTC------------CCAGTCAG--------GCCTCGC----------------------CCCCTGCAT---------------------------------CTCCTTGGATGCCTGCACCA-------------GCACTGCCCCAACCA----------------GGAAACCAAAG-------------------------------------
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113742884 122 - 132174527 ----CTCCTGGCACTGGAGACC----CCTC------------CCAGTCAG--------GGCTTGC---------------------CGCTCCTCGT---------------------------------CTCCTTGTATG-CTGTGCCA-------------GCACTGCCCCAGCTG----------------GGAAACCGGGGCTCAGGCAGGGACTTGAC---CTCTTGCCAGCT----
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   81267 122 -    125141 ----CTCCTGGCACTGGAGACC----TCTG------------CCAGTCAG--------GGCTCGC---------------------TGCCCCTTGT---------------------------------CTCCTTGGATG-CTGCGCCA-------------GCACCGCCACAGCTG----------------GGACACTGGAGCCCAGGCAGGGGCTTGAC---CTCTTGCCAGCT----
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             90165 122 +  11725426 ----CTCCTGGCACTGGAGACC----CCTC------------CCAGTCAG--------GGCTCGC---------------------CGCTCCACGT---------------------------------CTCCTTGGATG-CTGTGTCA-------------GCACCTCCCCAGCCA----------------GGACACCGGCGCCCAGGCAGGGGCTTGAC---CTCTTGCCAGCT----
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            682908 121 +    730879 ----CTCCTGGCACTGGAGACC-----CTC------------CCAGTCAG--------GGCTCGC---------------------TGCCCCGCGC---------------------------------CTCCTTGGATG-CTGTGCCA-------------GCGCCGCCCCCGCCG----------------GGAGACTGGAGCCCACGCAGGGGCCTGAC---CTATTGCCAGCT----
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5780259 132 -  36342412 -----TCCTGGCACTGGAGACC----TCTC------------CAGTCGGG--------GCCTCAC---------------------ACCCTCGCTC---------------------------------CGGCTTCTGCCTCTGCACCATGATCTTCCCACCTCACCCCCGCAGCTGCCCCCAGCTTTTCCCTGCAAACCTGTGCCTGCACAGCC--------------------------
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90188928 138 + 124595110 ----TCTCTGGCAATGGAGAGC----CCACAGTTAGCACCAACTTGTCAGTCACTATCACCTTACCCACTTTGTCTCCACCAGTTTCCTACTGCTT---------------------------------ATCCCAGCATGCCT--ACCT-------------ATAAAGCTCCAGCCA----------------TGAAA-----GCCTAGGTGGAT--------------------------
i mm10.chr9                      I 2 C 0
s canFam3.chr3                    58211471  97 +  91889043 ----CTCCTGGC---------------CCA------------CAACCCAC--------TGCCCAA---------------------GCCTCTGAAC---------------------------------CTCAG-------CCGCCCCC-------------GCACAGTGCCC-CCA----------------AGAAACC--AGCCCACG-----GCTCAGC---CTCCTACTGCTT----
i canFam3.chr3                   C 0 I 4
s dasNov3.JH579681                  845110 163 +   1727078 CTTCTCCCTCACAGCTGGCTTCACAGCCAC------------CACTTCAG--------CCTCTGC---------------------ACCTCTGCCTTCCTGTGTCACCCACGCCAGCTGCCCTAAGCTCCTCCCCACGTGCCCGCACCT-------------AT----CCTCAGTCA----------------GAAAACCAGGGCACAGGCAGTGGCTCGGCTCTCACTGGCTAGAT----
i dasNov3.JH579681               C 0 C 0
e panPan2.chr15                   23055920 1000 -  99763055 M
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C
e nomLeu3.chr6_GL398151_2_random      3629  10 -     28805 I

a score=2196129.000000
s hg38.chr15_KI270850v1_alt          30076 416 +    430880 gaccccaggcagtggcttgacctctTGCT----GGC--TGGCTGACCCCAGGCAGTGGTTTGC-TCCCTGATAGAG-GGG-TTAA------ATGAGGTGGCACAGGTGACATGAAGGGCTCTGAGCCCCGAAGAGTAGGCCTCAG-TGTTTGGTAACAATTTATATTCTTATTTTTAATAACAACGATGGCCTCTCCTCTTTACCCATGTCTCCAGCCACCTACTTG-TCCTTGCTTCTTG--CCCTCT--AAACCACT-GGGGTATCAAGGCCTGGGCTCCGAGGAGGACCAGGAGGGAGGT-----GCCAACCCCCAGTGCCTTTGACGTTGAA------------ATTCCCTGC--------ACGCGCTGCTCAGGAGCCCGTGGCGTGTCAGATCCCCTGCCTGCCCGcaggctt---t-gcagaactcttcccttctcttgtctcttgtgatgctcatgaca
s panTro5.chr15                   59806389 357 +  83230942 GACCCCAGGCAGTGG-------------------------------------------TTTGC-TCCCTGATAGAA-GGGATTAA------ATGAGGTGGCACAGATGACACAAAGGGCTCTGAGCCACGAAGAGTAGCCCTCAG-TGTTTGGTAACAATTTCTATT---ATTTTTAATAACAACAACGGCCTCTCCTCTTTGCCCATGTCCCCAGCCACCTACTTG-TCCCTGCTTCTTG--CCCTCT--AAGCCTCT-GGAGTATCAAGGCCTGGGCTCCGAGGAGGACC-------------------------CAGTGCCTTTGACGTTGAA------------ATTCCCTGC--------ATGCGCTGCTCAGGAGCCCGTGGCGTGTCAGATCCCCTGCCTGCCCGCAGCCtt---t-acagaactcgtcccttctcttgtctcatgtgatgctcatgaca
i panTro5.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            323649 379 -    378907 GACCCCAGGCAGTGG-------------------------------------------TTTGC-TCCCTGATAGAG-GGG-TTAA------ATGAGGTGGCACAGGTGACATGAAGGGCTCTGAGCCCCGAGGAGTAGCCCTCAG-CGTTTGGTAACAATTTATATTCTTATTTTTCATAACAACGATGGCCTCTCCTCTTTGCCCATGTCTCCAGCCACCTACTTG-TCCTTGCTTCTTG--CCCTCT--AAACCACT-GGGGTATCAAGGCCTGGGCTCCGAGGAGGACCAGGAGGGAGGT-----GCCAACCCCCAGTGCCTTTGACGTTGAA------------ATTCCCTGC--------ACGCGCTGCTCAGGAGCCCGTGGCGTGTCAGATCCCCTGCCTGCCCGcaggctt---t-gcagaactcttcccttctcttgtctcttgtgatgctcatgaca
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      3639 417 -     28805 GAGCCCAGGCAGTGGCTTGACCTCTTGCT----GGC--TGGCTGACCCCAGGCAGTGGTTTGC-TCCCTGATAGAA-GGGGTTAA------ATGAGGTGGCACAGGTGACACGAAGGGCTCTGAGCCGCGAAGAGTAGCCCTCAG-TGTTTGGTAACAATTTCTATTCTTATTTTTAATAACAACGATGGCCTTTCGTCTTTGCCCATGTCCCCAGCCACCTACTTG-TCCCTGCTTCTTG--CCCTCT--AAGCCTCT-GGGGTATCAAGACCTGGGCTCTAAGGAGAACCAGCAGGGAGGT-----GCCAACCCCCAGTGCCTTTGACGTTGAA------------ATTCCCTGC--------ACGTGCTGGTCAGGAGCCCGTGGCGTGTCAGATCCCCTGCCTGCCCCCGGGCtt---t-gcaggactcttcccttctcttgtctcttgtgatgctcacgaca
i nomLeu3.chr6_GL398151_2_random I 10 C 0
s rheMac8.chr7                    59991093 394 + 169600520 ---CCCAGGCAGTGACTTGACCTCTTGCT----GGC--TGGCTGACCCCAGGCAGTGGTTTGC-TCCCTGATAGAA-GGGGTTAA------ATGAGGTGACATAGGTGACTTGAAGGGCTCTGAGCCCCAAAGAGTAGCACTCAG-TATTTGGTAACAATTTCTATTCTTATTTTTAATAACAATCATGGCCTCTCCTCTTTGCCCATGTCCCCAGCCACCTACTTG-TCCCTGCTTCTTG--CCCTCT--AAGCCACT-GGTGTATCAAGGCCTGGGCTCCGAGGAGGACGAGCAGGGAGGT-----GCCAACCCCCAGTGCC-------------------------TTCCCTGC--------ATGCGCTGGTCAGGA-------GTGCATCAGATCCCCTGCCTGCCTGCAGCCtt---t-gcagaactcttcccttctcttgtcttatgtgatgctcacgaca
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3912245 414 +   4820037 ---CCCAGAAAGTGACTTGACCTCTTGCT----GGC--TGGCTGACCCCAGGCAGTGGTTTGC-TCCCTGACAGAA-GGGGTTAA------ATTAGGTGGCACAGGTGACATGAAGGGCTCTGAGCCCCGAAGAATAGTGCTTAG-TATTTGGTAACAAAATCTATTCTTATTTTTAATAACAACGATGGCCTCTCCTCTTTGCCTATGTCCCCAGCCACCTACTTG-TCCCTGCTTCTTG--CCCTCT--AAGCCTCT-GGGGTATCAAAGCCTGGGCTCTGAGGAGGACCAGCAGGGAGGT-----GCCAACCCCCAGTGCCTTTGACGTTGAA------------ATTCCCTGC--------ACGCGCTGGTCAGGAGCCCGTGGCGCGTCAGATCCCCTGCCTGCCCGTGGCctt---t-gcagaactttttccttctcttgtctcatgtgatgctcatgaca
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9774742 414 +  10730278 ---TCCAGAAAGTGACTTGACCTCTTGCT----GGC--TGGCTGACCCCAGGCAGTGGTTTGC-TCCCTGACAGAA-GGGGTTAA------ATGAGGTGGCACAGGTGACATGAAGGGCTCTGAGCCCCGAAGAATAGTGCTCAG-TATTTGGTAACAAAATCTATTCTTATTTTTAATAACAACGATGGCCTCTCCTCTTTGCCTATGTCCCCAGCCACCTACTTG-TCCCTGCTTCTTG--CCCTCT--AAGCCTCT-GGGGTATCAAGGCCTGGGCTCCGAGGAGGACCAGCAGGGAGGT-----GCCAACCCCCAGTGCCTTTGACGTTGAA------------ATTCCCTGC--------ACGCGCTGGTCAGGAGCCCGTGGCGCGTCAGATCCCCTGCCTGCCCGTGGCCtt---t-gcagaactctttccttctcttgtctcatgtgatgctcacgaca
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3914764 414 +   4030761 ---CCCAGAAAGTGACTTGACCTCTTGCT----GGC--TGGCTGACCCCAGGCAGTGGTTTGC-TCCCTGACAGAA-GGGGTTAA------ATGAGGTGGCACAGGTGACATGAAGGGCTCTGAGCCCCGAAGAATAGTGCTTAG-TATTTGGTAACAAAATCTATTCTTATTTTTAATAACAACGATGGCCTCTCCTCTTTGCCTATGTCCCCAGCCACCTACTTG-TCCCTGCTTCTTG--CCCTCT--AAGCCTCT-GGAGTATCAAGGCCTGGGCTCTGAGGAGGACCAGCAGGGAGGT-----GCCAACCCCCAGTGCCTTTGACGTTGAA------------ATTCCCTGC--------ACGCGCTGGTCAGGAGCCCATGGCGCGTCAGATCCCCTGCCTGCCTGTGGCCtt---t-gcagaactctttccttctcttgtctcatgtgatgctcacgaca
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4022125 419 +   5013933 ---CCCAGACAGTGACTTGACCTCTTGCT----GGC--TGGCTGACCCTAGGCAGTGGTTTGC-TCCCTGACAGAA--GGGTTAACCCCTTCTGAAGTGGCCCAGGTGACAAGAAGGGCTCTGAGCCCAGAAGAATAGTGCTCAG-TATTTGGTAACAATTTCTATTCTTATTTTTAATAACAACGATGGCCTCTCCTCTTTGCCTATGTCCCCAGCCACCAACTTG-TCCCTGCTTCTTG--CCCTCT--AAGCCTCT-GGGGTATCAAGGCCTGGGCTCCGAGGAGGACCAGCAGGGAGGT-----GCCAATCCAGAGTACCTTTGACATTGAA------------ATTCCCTGC--------ACGCGCTGGTCAGGGGCCTATGGTGCGTCAGATCCCCTGCCTGCCCGCGGCCtt---t-gcagaactttttccttctcttgtctcatgtgatgctcacgaca
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113743006 380 - 132174527 ---------------------------------------GGCTGACCCCAGGCAGTGGTTTCC-TCCCTGATAGAA-GGGGTTAA------ATGAGGTGGCACAGGTGACATGAAGGGCTCTGAGCCCCAAAGAGTAGCACTCGG-TATTTGGTAACAATTACTATTCTTATTTTCAAT-ACAAGGATGGCCTCTCATCTTTGCCCATCTCCCCAGCCACCTACCTGCCCCCTGCTTCTAG--CCCCCT--AAGCCGCT-GGGGTGTCTGTGCCTGGGCTCAGAGGGGGACCGGCAGGGAGGG-----GCCAACCCCCAGCGCCTCTGATGTTCAG------------ATTCCCTGC--------AAGCACTGGTCAGAAGCCCGTGGCGAGTCAGGT-CCCTGCCTGCCCGCAGCCTT---T-GCAGAACTC---CCTTCTCTTGTAGcatgtgatgctcaagaca
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   81389 326 -    125141 ---------------------------------------GGCTGACCCCAGGCAGTGGTTTCC-TCCCTGATAGAA-GGGGTCAA------GTGAGGTGGCACAGGTGACATGAAGGGCTCT-AGCCCCGAA--------------------------------------------------------GGCCTCTTGTCTTTGCCCATCTCCCCAGCCACCTACCTG-GCCCTGCTTCTAG--CCCCCTAAAAGCCGCT-GGGGTGTCCGGGCCTGGGCTCAGAGGGGGACCAGCAGGGAGGG-----GCCCACCCCCAGCACCTCTGATGTTCAG------------ATTCCCTGC--------ACGCACTGGTCAGGAGCCCGTGGTGAGTCAGGT-CCCTGCCTGCCCGCAGCCTT---T-GCAGAACTC---CCTTCTCttgtcgtgtgtgatgcttgagaca
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             90287 323 +  11725426 ---------------------------------------GGCTGACCCCAGGCAGTGGTTTCC-TCCCTGATAGAA-GAGGTCAA------ATGAAGTGGCACAGGTGACATGAAGGGCTCT-AGCCCCAAA--------------------------------------------------------GGCCTCTCGTCTTTGCCCATCTCCCCAGCCACCTACCTG-CCCCTGCTTCTAG--CCCCCT--AAGCCGCT-GGGGTGTCCGGGCCTGGGCTCAGAGGGGT-CCAGCAGGGAGGG-----GCCCACCCCCAGCGCCTCTGATGTTCAG------------ATTCCCTGC--------ACGCACTGGTCAGGAGCCTGTGGTGAGTCAGGT-CCCTGCCTGCCCGCAGCCTT---T-GCAGAACTC---CCTTCTCttgtcgcatgtgatgctggagaca
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            683029 361 +    730879 ----------------------------------------GCTGACCCCAGGCAGTGGCTTCC-TCACTGATAGAA-GGGGTTAA------ATGAGGTGGCACAGGTGACCTGAAGGGCTCTGAGCCCCGAAGAGTAGTGCTCAG-TATTTGGTAACAATTCCTGTTCTTATTTTCAAT-ACAAGGATGGCCTCTCATCTCTGCCCATCTCCCCAGCCGCCTACCTG-CCCCTGCTTCTAG--CCCCCT--AAGCCGCT-GGGGTGTCCGGGCCTGGGCTCAGAGGGGGACCAGCAGGGAGGG-----GCCGACCCCCAGTGCCTCTGGAGTTCAG------------ATTCCCTGC--------ACGCGCTGGTCAG-----------------GTC-CCCTGCCTGCCCGAAGCCTT---T-GCAGAACTC---CCTTCTCttgtcgcatgtgatgctcgagaca
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5780391 392 -  36342412 -CCACCAGGAA---------CCTTCTGCTG---GGC--TGCCTAGCCCTGGGCAGCAGTTTTC-TTTGGGACAGAAAGGGGTGAA------GTGGGGTGGTCCAGGTGACATGCAGGGC-CTGAGCTGCAGAGA--AGTGCTCAG-CATTTGGTAACAATTCCTATTCTTATTTTTAGTGACAG-GGTGGCCACTGCTCCCTGCCCACATCCCCAGCTGCCTACTTG-CCCCT--TTCTTG--CTCTCT--AAGCCACA-GGAGTGT-GAGGCCTCTGCTCAGAGGAGCATCAGCA--GAGGG-----TCTTGCACCCAGTGCTTTGGATGTTAAA---------------TCCTGT-----------TTCTGCTCAGGAGCCAATGGTGTGCTCGCT-CCCCACCCGCCCCCAGCCTTC--T-GTAAAAATTTCCCcatttcttgtctcatgt--tgcttatgaga
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90189066 340 + 124595110 -----------------------------------------------GCAGGCAACTGCCTCC-TCTCTCACTGGA-AGGGGTTG------GCAGACTGGTCCTGGTGGTATGCTGGGCTCCGAGCCTGCAG--ATAGCACT--G-TGCTTCGTAATAGTTC---TTCCGATTTCTAGT------GCTTCCTGCTCTTCCATGCCCAGGGCCCCGGCCACCTTCCTT-ACCTTGCTTCTTG--CTTTTA--AA------------------GCTTGGGTTTAAAGGAGGCTGAAGAAAGAGGG-----GCTAACC--CAGTGTCTTTGATAGTGAA-------------TCCTATTT--------ATAGA------AAAATTCCACGGTGTGCCAGAGTCCACGTTTATCTGTAGTCTTATGT-GAGAGGCACGTCCTGCCTCCTGTCTCCTGGGATGTTCTTAACA
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58211572 346 +  91889043 -GACCCCGGCAGCCGTTTCCTCTGTCTTAGAAAGGC-GGGGCCGGCTCCCGGTTGT---------------------AGGGCTCA------GTGAGGTCATTGCAGGGTTACGCAGGGCTCAGGGTCTGGCAGAGGTTGTGTCAG-TGTTTGTTAGCAACATGTACTCCTG--TCCAGCAACCTCAGAGGTCGCTCCTCCCTGCC-----------------------CCCTTGCCACTAGGACCCCCC--A--------GGGGTGT-----------------AGACGGGCAGCAGGGAGGT-----GCTAGCC--CAG-GCCTTTGACATCCA---------------TCCCTGTTTCTAGGAAAGTCCTGTCTA----CCCTGGG-----CAGAGCCCCTGCCTG-CTGTGGCCTT---TCGTAAAACTTG--CCCTCCGGTGCCTTGTGCCAC-CTGTCAACC
i canFam3.chr3                   I 4 C 0
s dasNov3.JH579681                  845273 406 +   1727078 GAGCCAAGGCAATGGTTTCCTCTTTGGTA----GAAAGGGGCTCACC-----------TTTGCATCCCCCTCA----AGGGTTAA------ACAAGGTGGTACAGGTGCTGTGCAGGGCTCGGGACCT------GTCCCACGCAGTTGTTCAGTA-----------TCTGGTTTTTAGTAGTGG-GGGGGCCCCTCCCCCCTGCCCACCTCTCCAGCCTCCTCCTTG-CTCCTGCTTCCGG--GAAATG--AACCCACTGGGGGCTTTGAGGACT--GCTCAGAGGACAACCAGCAGGGAAGGTGCTAACTAACCTCCAGTGCCCTTGACATTGAATCCTGTTCAGAAAATCCCCAT--------GTACCCTGGAGAGGAGCCCAATGTGTGTCTGCTCCCCTGCCCACTTACAGCCTTT--T-ATAAAACTTTCCTCATCTCTTATCTCATGTGATCCTCGCAATA
i dasNov3.JH579681               C 0 M 955
e panPan2.chr15                   23055920 1000 -  99763055 M
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C

a score=840153.000000
s hg38.chr15_KI270850v1_alt          30492 118 +    430880 tgcctttaagggaggggtgggtctccctgtc------tcacatctgaggaaactgaggctcagggaggtagagaagttcacctg-ggtcaga-ggcacagctggggtggggcaggg-ccagagagag
s panTro5.chr15                   59806746 118 +  83230942 tgcctttaagggaggggtgggtctccccgtc------tcacatctgaggaaactgaggcttagggaagtagagaagttcacctg-ggtcaga-ggcacagctgggatggggcaggg-ccagagagag
i panTro5.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            324028 117 -    378907 tgcctttaagggaggggtgggtctccctgtc------tcacatctgaggaaactgaggctcagggaggtagagaagttcacctg-ggtcaga-ggcacagctggggt-gggcaggg-ccagagagag
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      4056 118 -     28805 tgcctttaagggaggggtgggtctccccgtc------tcacatctgaggaaactgaggcttagggaggtagagaagttcacctg-ggtcaga-ggcacagctggggtggggcaggg-ccagagagag
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59991487 118 + 169600520 tgcctttaagggaggggtggatctccccatc------tcacatgtgaggaaactgaggctcagggaggtagagaagttcacctg-agtcaga-ggcacagctgggatggggcaggg-ccagagagag
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3912659 118 +   4820037 tgcctttaagcgaggggtgggtctctccatc------tcacatctgaggaaactgaggctcagggaggtagagaagttcacctg-ggtcaga-ggcacagctggggtggggcaggg-ccagagagag
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9775156 118 +  10730278 tgcctttaagcgaggggtgggtctccccatc------tcacatctgaggagactgaggctcagggaggtagagaagttcacctg-ggtcaga-ggcacagctggggtggggcaggg-ccagagagag
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3915178 118 +   4030761 tgcctttaagcgaggggtgggtctccccatc------tcacatctgaggaaactgaggctcagggaggtagagaagttcacctg-ggtcaga-ggcacagctggggtggggcaggg-ccagagagag
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4022544 118 +   5013933 tgcctttaagcaaggggtgggtctccccatc------tcacatctgagaaaactgaggctcagggaggtagagaagttcacctg-ggtcaga-ggcacagctggggtggggcagga-ccacagagag
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113743386  90 - 132174527 tgcctttaagggaggggtgggtttccccatc------tcacatctgaggacactgatgctcagggagatagagaagttcacctg-ggt------------------------------cagagagAG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   81715 117 -    125141 tgccttt-aggaaggggcgggtctccccgtc------tcacatctgaggacgctgaggctcagggaggtagagaagttcgcctg-ggtcaga-ggcacagctggggtggggcaggg-ccagagagag
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             90610 118 +  11725426 tgcctttaagggagggatgggtctccctgtc------tcacatctgaggacactgaggctcagggaggtagagaagttcacctg-ggtcaga-ggcacagctggggtggggtaggg-ccagagagag
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            683390 118 +    730879 tgcctttaagggaggggcgggtctccccgtc------tcacatctgaggacactgaggttcagggaggtagagaagttcacctg-ggtcaga-ggcacagccggggtggggcaggg-ccggggagag
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5780783  93 -  36342412 cgcttttaagggatggattgatctccttgtg------tcacatctgaggaaactgagggtcagag----------------------------GACATAGCCATGGCAGGGCAGGGCCCAGGGTGAG
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90189406 119 + 124595110 --CTCTTAAGGCATgaaatgatgtccccctccccccttctcatctagagaaactgaggatcaggg-gaaaaagagcttagtc----atcaggcaggatgactgtgatgggactgga-cccaagcaaa
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58211918 116 +  91889043 TGGCTGTGTGACACAGACCGGGCTCCCTGTC------TCACAGCTGGGGGACC--GTGCTCAGGGAGGTGGAAGGGTTCACTTGAGGTCAGAGGGCGCGGCTGGTGGCTGGCTGGA-GCCCGGAG--
i canFam3.chr3                   C 0 C 0
e dasNov3.JH579681                  845679 955 +   1727078 M
e panPan2.chr15                   23055920 1000 -  99763055 M
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C

a score=1686354.000000
s hg38.chr15_KI270850v1_alt          30610 190 +    430880 gcctcccgacccccactcccagctttcttctcctgaccctggctggcccccGGGGCT-------------------------------------------GGGGCCACAGAGGGCTGGCCGCCAGCACCAGGGGCCTCCCCT-CCTCGTGTGTTGCAGAACGTGGG-------------------------GCT----------GTGACTTTGAGATTGACTCTGGCACTATGGAGGACCGCTGTGGCGTGTGCCACGGCAACGGCTCC
s panTro5.chr15                   59806864 225 +  83230942 gcctcccgacccccactcccagctttctcctcctgaccctggctggcccccGGGGCT-------------------------------------------GGGGCCACAGAGGGCTGGCTGCCAGCACCAGGGGCCTCCCCT-CCTCGTGTGTTGCAGAATGTGGGCTGTGACTTCAAGATTGACTCCGGTGCTATGGAGGACCGCGACTTCAAGATTGACTCCGGTGCTATGGAGGACCGCTGTGGCGTGTGCCATGGCAACGGCTCC
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23056920 187 -  99763055 GCCTCCCGACCCCAACTCCCAGCTTTCTTCTCCTGACTCTGGCTGGCCCC--GGGCT-------------------------------------------GGGGCCACAGAGGGCTGGCCGCCAGCACCAGGGCCCTCCCCT-CCTCGTGTGTTGCAGAACGTGG--------------------------GCT----------GTGACTTCGAGATTGACTCCGGCGCTATGGAGGACCGCTGTGGCGTGTGCCACGGCAACGGCTCC
i panPan2.chr15                  M 1000 C 0
s gorGor5.CYUI01015946v1            324145 190 -    378907 gcctcccgacccccactcccagctttcttctcctgaccctggctggcccctGGGGCT-------------------------------------------GAGGCCACAGAGGGCTGGCCGCCAGCACCAGGGGCCTCCCCT-CCTCGTGTGTTTCAGAACGTGGG-------------------------GCT----------GTGACTTTGAGATTGACTCTGGCGCTATGGAGGACCGCTGTGGCGTGTGCCACGGCAACGGCTCC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      4174 232 -     28805 gcctcccgatcctcactcccagcttcctcCTCCTGACCCTGGCTGGCCTCCGGGGCTGTGGCCACAGCGGGCTGGCCTCCGGGGCTGTGGCCACAGAGAGGTGGCCACAGAGAGCTGGCCGCCAGCACCAGGGGCCTCCCCT-CCTCGTGTGTTGCAGAACGTAG--------------------------GCT----------GTGACTTCGAGATTGACTCTGGCGCTATGGAGGACCGCTGTGGCGTGTGCCACGGCAACGGGTCC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59991605 189 + 169600520 gcctcctgacccccactcccagctttctcctcctgaccctggctggcccccGGGACT-------------------------------------------GGGACCACACAGGGCTGACCACCAGCACCAGGGGCCTCTCCT-CCTTGTGTGTTGCAGAACGTGG--------------------------GCG----------GTGACTTCAAGATTGACTCCGGTGCTATGGAGGATCACTGTGGCGTGTGTCACGGCAATGACTCC
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3912777 189 +   4820037 gcctcctgacccccactcccagctttctcctcctgagcctggctgacccccGGGGCT-------------------------------------------GGGGCCACAGAGGGCTGGCTGCCAGCACCAGGAGCCTCCCCT-CCTTGTGTGTTGCAGAATGTGG--------------------------GCT----------GTGACTTTGAGATTGACTCCGGTGCTATGGAGGATCGCTGTGGTGTGTGTCACGGCAACGGCTCC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9775274 189 +  10730278 gcctcctgacccccactcccagctttctccTCCTGAGCCTGGCTGGCCCCCGGGGCT-------------------------------------------GGGGCCACAGAGGGCTGGCCGCCAGCACCAGGAGCCTCCCCT-CCTTGTGTGTTGCAGAACGTGG--------------------------GCT----------GTGACTTTGAGATTGACTCCGGTGCTATGGAGGATCGCTGTGGTGTGTGCCACGGCAACGGCTCC
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3915296 189 +   4030761 gcctcctgcgccctactcccagctttctcCTCCTGATCCTGGCTGGCCCCCGGGGCT-------------------------------------------GGGACCACAGAGGGCTGGCCGCCAGCACCAGGAGCCTCCCCT-CCTTGTGTGTTGCAGAATGTGG--------------------------GCT----------GTGACTTTGAGATTGACTCCGGTGCTATGGAGGATCGCTGTGGTGTGTGCCACGGCAACGGCTCC
i manLeu1.NW_012102632v1         C 0 M 4048
s colAng1.NW_012114844v1           4022662 189 +   5013933 gcctcctgacccccactcccagctttctcctcctgagcctgactggcccccGGGGCT-------------------------------------------GGGGCCACAGAGCGCTGGCCGCCAGCACCAGGAGCCTCCCCT-CCTTGTGTGTTGCAGAACGTGG--------------------------GCT----------GTGACTTTGAGATTGACTCCGGTGCTATGGAGGATCGCTGTGGTGTGTGCCACGGCAACGGCTCC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113743476 190 - 132174527 GCCTCCTGACCCCGACTCCCAGATGTCTCCTCCTGACCCTGGCTGGCCCCCAGGGCT-------------------------------------------GGGGCCACAGAGGGCTGGCCGCCAGCACCACGGCACTCCCCTCCCTTGTGTGTTGCAGAATGTGG--------------------------GCT----------GTGACTTCGAGATTGACTCCAGTGCCATGGAGGACCGCTGTGGTGTGTGCCACGGCAATGGCTCC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   81832 190 -    125141 gcctcccgaccccgactcccagccgtctccgcctgaccCTGGCTGGCTCCCGGGGCT-------------------------------------------GCAGCCACAGAGGGCTGGCCGCCGGCACCACGGGCCTCCCCTCCCTTGTGTGTTGCAGAATGTGG--------------------------GCT----------GTGACTTCGAGATTGACTCCAGTGCCATGGAGGACCGCTGTGGCGTGTGCCACGGCAATGGCTCC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             90728 188 +  11725426 gcctcctgatccccactcccagctgtctcctcctgaccctgg-tggtccccGGGGCT-------------------------------------------GCGGCTACAGAGGGCTGACAGCCAGCACCATGGGCCT-CCCTCCCTTGTGTGTTGCAGAATGTGG--------------------------GCT----------GCGACTTCGAGATTGACTCCGGTGCCATGGAAGACCGCTGTGGCGTGTGCCACGGCAATGGCTCC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            683508 189 +    730879 gcctcccgacccccacttccagctgtcccctccTGACCCTGGCTGGCCCCCAGGGCT-------------------------------------------GGGGCCACAGAGGGCTGGCCGCCAGCACCATGG-CCTCCCCTCCCTTGTGTGTTGCAGAATGTGG--------------------------GCT----------GTGACTTCGAGATTGACTCCGGTGCTATGGAGGACCGCTGTGGCGTGTGCCACGGCAATGGCTCC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5780876 181 -  36342412 GGCTCCTAATGCTTGCTCGGAGAT---TCTCCTTGCCCTTGGCAGGCCCCTGAGGCT-------------------------------------------GAGG---CAGAGGACTGCAGCCCAGCACGAGGG--CCTCCCT-CCCTGTGTATTGCAGAATGTGG--------------------------GCT----------GCGACTTTGAGATTGACTCCGGCGCCATGGAGGACCGCTGTGGCGTGTGCCATGGCAACGGTTCC
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90189525 168 + 124595110 ggcttttgacctc--ctcctatggtctctctcctgagcc---CTGGCAC---ATACT--------------------------------------------------CAGGGGGTTGGCAGCCAGCACAAAGGGCCTCCTCT-C------TATTACAGAACGTGG--------------------------GCT----------GCGACTTTGTGATTGACTCTGGTGCTGAGGAGGACCGCTGTGGCGTGTGCCGGGGGGATGGCTCT
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58212034 155 +  91889043 ----CCCTGTCCTCCCTCC---------TCTCCCTGCTCTGGTGGATCCCTGAGGCT-------------------------------------------GGGG-----------------CTGATGCTAGG----TCTCCC-TCCTGTGTGTTCCAGAATGTGG--------------------------GTT----------GTGACTTCGAGATCGACTCTGGTGCCATCGAGGATCGCTGTGGCGTGTGCCACGGCAATGGCTCC
i canFam3.chr3                   C 0 C 0
e dasNov3.JH579681                  845679 955 +   1727078 M
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C

a score=3763134.000000
s hg38.chr15_KI270850v1_alt          30800 554 +    430880 ACCTGCCACACCGTGAGTGGGACCTTCGAGGAGGCCGAGGGCCTGGGTATGGG----------------------GTGGGACCACTGT-GGGGAGGGGTGTGCTCTTCACCTGGTGGCCCCT-----TCCCCATCT-CCCCCGGGCCCCTGTCC--------TTGGCC-TCGTGGCCCCCACCCAGCCTAGAGATGGCTAAGCAGGG-AGGGCTTGC-TGGGGTGG-------ATTCTTGCAGGAGTCAGGGGACCCCTGGCCCACACGCAGAGACCTGTCCCCATGGGGAGTCTTCCTGTCCCAGAGACCCCAGGCAGGGCCACCCCGACTTGTGTG---TGGCCCCTGGGCCTTTCAAAGAATGGTCGTCTCCTCCTGAATCTTCTGAGACCC-CCAGCTCCATGCCCTCACCTC-TG-GTCTGTTTTGCACATGTTGCTGAAGTACTGACTGTGTG--------CTAGGTGATGAGGACATGCAGGTgaagcgct--cagtcctgaagggggacagaaccttctggtgtgatcagtgcagtgga--gggaggcccagagggctgtgggagcactgaagaagaaggtcctggcctg-----------------gggaagtcagggaaggtttcc
s panTro5.chr15                   59807089 537 +  83230942 ACCTGCCATACCGTGAGCGGGACCTTCGAGGAGGCCGAGGGCCTGGGTATGGG----------------------GTGGGACCACTGT-GGGGAGGGGTGTGCTCTTCATCTGGTGGCCCCT-----TCCCTATCT-CCCCTGGGCCCATGTCC--------TTGGCC-TCGTGGTCCCCACCCAGCCTAGAGACAGCTAAGCAGGG-AAGCCTTGC-TGGGGTGG-------ATTCTTGCAGGAGTCAGGGGACCCCTGGCCCACGTGCAGAGACCTGCCCCCATGGGGAGTCCTCCTGTCCCAGAGA-CCCAG---------------CTTGTGTG---TGGCCCCTGGGCCTTTCCAATAATGGTAGTCTCCTCCTGAAGCTTCTGAGA-CC-CCAGCTCTGTGCCCTCACCTC-TG-Gtctattttgcacacgttgatcaagtactcactgtgtg--------ctaggtgatggggacatgcaggtgaagcact--tagtcctgcagggggacagaaccttctggtgtgaccagtacagtgga--gggaggcccagagggctgtgggagcactgaggaagaaggtcctggcctg-----------------gggaagtcagggaaggtttcc
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23057107 536 -  99763055 ACCTGCCACACCGTGAGCGGGACCTTCGAGGAGGCCGAGGGCCTGGGTATGGG----------------------GTGGGACCGCTGT-GGGGAGGGGTGTGCTCTTCACCTGGTGGCCCCT-----TCCCCATCT-CCCCTGGGCCCCTGTCC--------TTGGCC-TCGTGGCCCCCACCCAGCCTGGAGATGGCTAAGCAGGG-AAGCCTTGC-TGGGGTGG-------ATTCTTGCAGGAGTCAGGGGACCCCTGGCCCATGTGCAGAGACCTGTCCCCATGGGGAGTCCTCCTGTCCCAGAGA-CTCAG---------------CTTGTGTG---TGGCCCCTGGGCC-TTCCAATAATGGTAGTCTCCTCCTGAAGCTTCTGAGA-CC-CCAGCTCTGTGTCCTCATCTC-TG-GTCTGTTTTGCACACGTTGCTCAAGTACTGACTGTGTG--------CTAGGTGATGGGGACATGCAGGTgaagcgct--tagtcctggagggggacagaaccttctggtgtgaccagtgcagtgga--gggaggcccagagggctgtgggagcactgaggaagaaggtcctggcctg-----------------gggaagtcagggaaggtttcc
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            324335 544 -    378907 ACCTGCCACACCGTGAGTGGGACCTTCGAGGAGGCCGAGGGCCTGGGTATGGG----------------------GTGGGACCACTGT-GGGGAGGGGTGTGCTCTTCACCTGGTGGCCCCT-----TCCCCATCT-CCCCTGGGCCCCTGTCC--------TTGGCC-TCGTGGCCCCCACCCAGCCTAGAGATGGCTAAGCAGGG-AGGGCTTGC-TGGGGTGG-------ATTCTTGCAGGAGTCAGGGGATCCCTGGCCCACATGCAGAGACCTGTCCCCATGGGGAGTCTTCCTGTCCCAGAGACCCCAGGCAGGGCCACCCCGACTTGTGTG---TGGCCCCTGGGCCTTTCAAAGAATGG--------CCCTGAATCTTCTGAGA--C-CCAGCTCCATGCCCTCACCTC-TG-GTCTGTTTTGCACATGTTGCTGAAGTACTGACTGTGTG--------CTAGGCGATGAGGACATGCAGGTGAAGCGCT--CAGTCCTGAAGGGGCACAGAACCTTCTGGTGtgatcagtgcagtgga--gggaggcccagagggctgtgggagcactgaggaagaaggtcctggcctg-----------------gggaagtcagggaaggtttcc
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      4406 538 -     28805 ACCTGCCACACCGTGAGTGGGACCTTCGAGGAGGCCGAGGGCCTGGGTATGGG----------------------GTGGGACCGCTGT-GGGGAGGGGTGTGCTCTTCACCTGGTGGCCCCT-----TCCCCATCTCCCCCCGGGCCCCTGTCC--------TTGGCC-TGGTGGCCCCCACCCAGCCTAGAGATGGCTAAGCAGGG-AAGCCTTGC-TGGGGTGG-------ATTCTTGCAGGAGTCAGGGGACCCCTGGCCCACGTGCAGAGACCTGTCCCCATGGGGAGTCCTCCTGTCCCAGAGA-CCCGG---------------CTTGTGTG---TGGCCCCTGGGCCTTTCAAAGAATGGTAGTCTCCTCGTGAAGCTTCTCAGA-CC-CCAGCTCCGTGCCCTCACCTC-CG-GTCTGTTTTGCACACGTTGCTCGAGTACTGACTGTGTG--------CTAGGTGATGGGGACATGCAGGTgaagcgct--cagtcctgcagagggacagaaccttctggtgtgaccagtgcagtgga--gggaggcccagagggctgtgggagcactgaggaagaaggtcctggcctg-----------------gggaagtcagggaaggtttcc
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59991794 556 + 169600520 ACCTGCCACACCGTGAGTGGGACCTTTGAGGAGGCCGAGCGCCTGGGTATGGG----------------------GTGGAACCGCTGTTGGGGAGGGGTGTGCTCTTCACCTGGTGGCCCCT-----CCCCCATCT-CCCCTGGGCCCCTGTCC--------TTCGTC-TTGTGGTCCCCACCTAGACTAGAGATGGCTAAGCAGGG-AAGCCTTGC-TGGGGTAG------AATTCTTGCAGGAGTCAGGGGACCCCTGGCCCACATGCAGAGAGCTGTCCCCACGGGGAGTCCTCCTGTCCCAGAGACCCCAGGCAGGGCCAGCTCGGCTTGTGTG---TGGCCCCTGGGCCTTTCAAAGAATGGTAGTCTCCTCCTGAAGCTTCTGAGATGC-CCAACTCCGTGCCCTCACCTT-TG-GTCTGTTTTGcacacgttgctcaaatactgactgtgtg--------ctaggtgatggggacatgcaggtgaaGTGCT--CAGTCCTGCAAGGGGACAGAACCTTCTGGTGtgaccagtgcagtaga--agtaggcccagagggctgtgggagcaccgaggaagaaggtcctggcctg-----------------gggaagtcagggaaggtttcc
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3912966 555 +   4820037 ACCTGCCACACCGTGAGCGGGACCTTCGAGGAGGCCGAGGGCCTGGGTATGGG----------------------GTGGGACTGCTGTGGGGGAGGGGTGTGCTCTTCACCTGGTGACCCCT-----TCCCCATCT-CCCCTGGGCCCCTGTCC--------TTGGCC-TTGTGGTCCCCACCCAGCCTGGAGATGGCTAAGCAGGG-AAGCCTTGC-TGGGGTGG------AATTCTTGCAGGAGTCAGGGGACCCCTGGCCCATGTGCAGAGACCTGTCCCCATGGGGAGTCCTCCTGTCCCAGAGACCCCAGGCAGGGCCAACCCGGCTTGTGTG---TGGCCCCTGGGCCTTTCAAAGAATGGTAGTCTCCTCCTGAAACTTCTGAGACCC-CCAGCTCTGTGCCCTCACCTC-CG-GTCTGTTTTGCACATGTTGCTCAAATACGGACTGTGTG--------CTAGGTGATGGGGACATGCAGGcgaagcgct--cagtcctgc-agggggcagaagcttctggtgtgaccagtgcagtgga--gggaggcccagagggctatgggagcaccgaggaagaaggtcctggcctg-----------------gggaagtcagggaaggtttcc
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9775463 555 +  10730278 ACCTGCCACACCGTGAGCGGGACCTTCGAGGAGGCCGAGGGCCTGGGTATGGG----------------------GTGGGACTGCTGTGGGGGAGAGGTGTGCTCTTCACCTGGTAACCCCT-----TCCCCATCT-CCCCTGGGCCCCTGTCC--------TTGGCC-TCGTGGTCCCCACCCAGCCTGGAGATGGCTAAGCAGGG-AAGCCTTGC-TAGGGTGG------AATTCTTGCAGGAGTCAGGGGACCCCTGGCCCACGTGCAGAGACATGTCCCCATGGGGAGTCCTCCTGTCCCAGAGACCCCAGGCAGGGCCAACCCGGCTTGTGTG---TGGCCCCTGGGCCTTTCAAAGAATGGCAGTCTCCTCCTGAAACTTCTGAGACCC-CCAGCTCCGTGCCCTCACCTC-CA-GTCTGTTTTGCACACGTTGCTCAAATACTGACTGTGTG--------CTAGGTGATGGGGACATGCAGGcaaagcgct--cagtcctgc-agggggcagaagcttctggtgtgaccagtgcagtgga--gggaggcccagagggctatgggagcaccgaggaagaaggtcctggcctg-----------------gggaagtcagggaaggtttcc
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4022851 555 +   5013933 ACCTGCCACACCGTGAGCGGGACCTTCGAGGAGGCCGAGGGCCTGGGTATGGG----------------------GTGGGACCACTGTGGGGGAGGGGTGTGCTCTTCACCTGGTGGCCCCT-----TCCCCATAT-CCCCTGGGCCCCTGTCC--------TTGGCC-TCGTGGTCCCCACCCAGCCTGGAGATGGCTAAGCAGGG-AAGCCTTGC-TGGGGTGG------AATTCTTGCAGGAGTCAGGGGACCCCTAGCCCACGTGCAGAGACCTGTGCCCATGGGGTGTCCTCCTGTCCCAGAGACCCCAGGCAGGGCCAACCTGGCTTGTGTG---TGGCCCCTGGGCCTTTCAAAGAATGGTAGTCTCCTCCTGAAGCTTCTGAGACCC-CCAGCTCCATGCCCTCACCTC-CG-GTCTGTTTTGCACGCGTTGCTCAAATACTGACTGTGTG--------CTAGGTGATGGGGACATGCAGGcgaagcgct--cagtcctgc-agggggcagaagcttctggtgtgaccagtgtagtgga--gggagggccagagggctatgggagcaccgaggaagaaggtcctggcctg-----------------gggaagtcagggaaggtttcc
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113743666 547 - 132174527 ACCTGCCATACCGTGAGCGGGACCTTCGAGGAGGCCGAGGGCATGGGTATGGG----------------------ATGGGACCACTGTGGGGGAGGGGTGTGCTCTTTACCTGGTGGCTGCT-----TCCCTATCT-GCCCCAGGCCCC--ACC--------TTGGCC-TCGTGGTCCCCACCCAGCC-ATAGATGACTAAGCAGGG-AAGCCTTGC-TGGGGTGG------AATTCTTATAGGAGTCA-GGGACCCCTAACCCAAGCACAGAGACCTGT-CCCGTGGGGAGTCCTCTTGTCCCAGAGACCCCAGGCAGGGCCGGCTCAGCTTGTGTG---TGGCCCCTAGGCCTTTCAGAGGATGGTAGTCTCCTCCCAAAGCTTCTGAGACCC-CCAGATCCACGCCCTCACCCC-GG-GTCTGCTTTGCACACGTTGTTCGAGTGCTGAC--TGTG--------CTAGGTGATGGGGACATGCAGGTAAATCGCT--cagtcccgc-aggggacagaaccttct-gtgtggccagtgcagtgca--gggaggcccagagggctgtgggagcaccaaggaagatgctcctggcctg-----------------gggaagtcagggaaggtttcc
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   82022 553 -    125141 ACCTGCCACACCGTGAGCGGGACCTTCGAGGAGGCTGAGGGCCTGGGTATGGG----------------------GTGGGACCACTGTGGGGGTGGGATGTGCTGTTTACCTGGTGGCCGCT-----TCCCTATCT-GCTCCAGGCCCC--CTCCCCCCCAATTGGCC-TTGTGGTCCCCACCCAGCC-ATAGATGGCTAAGCAAGG-AAGCCTTGC-TGGTGTGG------AATTCTCATAGGAGTCC-GGGACCCCTAACCCAAGCTCAGAGACCTGTCCCCATGGGGAGTCCTCTTGTCCCAGAGACCCCAGGCAGGGCCAGCTTGGCTTGTGTG---CAGCGCCTGGGCCTCTGGGAGGATGGGGGTCCCCTCCCGAAGCTTCCGATACCC-CCAGCTCCACGCCCTCACCTC-GG-GTCTGCTTTGCACAC---AATCGAGTGCTGAC--TGTG--------CTAGGTGATGGGGACATGTAGGTGAATCGTT--cagtcccgc-aggggacagaatcttct-gtgtggccagtgcagtgca--gggaggcccagagggctttgggagcaccgaggaagacgctcctggcctg-----------------gggaaatcagggaaggtttcc
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             90916 547 +  11725426 ACCTGCCACACCGTGAGCGAGACCTTCGAGGAGGCCGAGGGCCTGGGTATGGG-----------------------TGGGACCACTGTGGGGGAGGGGTGTGCTCTTTACCTGGTGGCCACT-----TCCCCATCT-CCCCCGGGCCCC--CCC-------ATTGGCC-TCGCGGTCCCCACCCAGCC-ATAGATGGCTAAGCAGGG-AAGCCTTGC-TGGGGTGG------AATTCTTGTAGGAGTCA-GGGACCCCTAACCCAAGCGCAGAGACCTGTCCCCATGGGGAGTCTTCTTGTCCCAGAGACCCCAGGCAGGGCCAGCTCGGCTTGTGTG---CAGCCCCTGGGCCTCTAGGAGGATGGTGGTCTCCTCCCGAAGCTTCCGAGGCCC-CCAGCTCCACGCCCTCACCTC-GG-GTCTGCTTTGCACACGTTGTTCAAGTGCTGAC--TGTG--------CTAGGTGATGGGGACATGCAGGTGAATCGCT--CAGTCCC-C-AGGGGACAGAATCTTCT-GTGTGGCCGGTGCAGTGCA--GGGAGGCCcagaggactttgggagcactgaggaagacgctcctggcctg-----------------gggaagtcagagaaggtttcc
i cebCap1.NW_016107334v1         C 0 I 142
s aotNan1.NW_018503093v1            683697 568 +    730879 ACGTGCCACACCGTGAGCGGGACCTTCGAGGAGGCCGAGGGCCTGGGTATGGGGTGGGACCACTGTGGGGGAGGGGTGGGACCACTGTGGGGGAGGGGTGTGCTCTTTACCTGGTGGCCGCC-----TCCCCATCT-GCCCCGGGTCCC--CCC-------ATTGGCC-TCGTGGTCCCCACCCAGCC-ACAGATGACTAAGCAGGG-AAGCCTTGC-TGGGGTGG------AATTCTCGTAGGAGTCA-GGGACCCCTAACCCAAGTGCAGAGACCTGTCCCCATGGGGAGTCCTCTTGT-CCAGAGACCCCAGGCAGGGCCAGCTCGGCTTGTGTG---CAGCCCCTGGGCCCCTGGGAGGATGGTGGTCTCCTCCTGAAGCTTCCGAGACCC-CCAGCTCCACGCCCTCACCTC-GG-GTCTGCTTTGcacacgttgttcgagtgctgac--tgtg--------ctaggtgatggggacatgcaggtgaatcgct--cagtcccgc-aggggacaaa--cttct-gtgcggccagtgcagtgca--gggaggcccagagggctgtgggagccccgaggaagacgctcctggccta-----------------gggaagtcagggaaggtttcc
i aotNan1.NW_018503093v1         C 0 I 134
s otoGar3.GL873530                 5781057 533 -  36342412 ACCTGTCACACCGTGAGCGGGACCTTTGAGGAGGCTGAGGGCCTAGGTATGAG----------------------G-GGGACCACTGCAGGGGAGGGCTGTTCTCTTAACTGGGTGGCCCCT-----TCCCTGCCT--TTCTAAGCCCCCACTC--------TTGGCC-CTGTGGTCCCCACCAGGGCTGGAGATGGCAAACGGAAG-CCTCCTTGCATGGTCTGG-------ATTCTTGTAGGAGTCAGGGGTTCCCTGGCCCAGGGGAAGAGATTTGTCTTCATGGGGTGTCCTGCTGTCTTAGGGGCCCCAGGCAGAGCCAGCCAGGCTTGTGTGTCCTGTCCTCTTTCCCCT--AGGGGTTTGCTGTCTTCTTAGGACTCTTCAGCAACCCTCTAGCTCTACTCCCTGGGCTCAGG-GTCTGTTTTGCACACATTGCCCCAGTTCTGACTGTGTG--------CTGGGTGATGGGGACATGATGGTGAAGACTTTATAGCCTGGCAGGGTGACAG--CCTATTAGTGTGACAAaggaagtgga--gggaggcctagtgggctgtgatagcactg-----------------------------------------agtcagggaagacttcc
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90189693 509 + 124595110 ACTTGCCAGACTGTGAGCAGGACCTTCAAGGAGACTGAAGGCCAGGGTATGGT-----------------------TGGGGCTGCTGGGCTGTGAATGTATGCTTGTAATCCTGTTGC---------------TTG-CCCCTGTG-----GTCC--------TCG--------GGTCCTCGTCTAGACTAGACATAGC--ATCAGAGCACTCCTTGT-TTGACCAGGGTCCTAATCCTCACAGCAGTCAGTAAATCCTTGTCACAAGT---GAGACCTGTTCTCTTAGGG-GTTCTTCTG----AGTGAC----------------------TGTGAG---TGGTGGGTAGTCCTTTCTGAG---GGCTGTTGACTTCTGAAGTT-----------TTAGTACCATGTCCCAGCCTTGAG-GTCTGAGTCACACATATTGCTTAAGTGCCAACTGTGTGATTTAACTCTGG-----GGGGACACCTAGGTGAAGAGCT--TA------C-AGGTGACAGAATCTTCA-CTGTGACAAAGGCAGTAGGCTGTGTATTTCAGGGAGAGAAGGAAACACCAAGCTAGAAGGT-CTGACCTgggaagtcagggaagtcagggaaatcagggaagGCTTCT
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58212189 427 +  91889043 ACCTGCCACACCGTGAGCGAGACCTTCGAGGAGTCTGAGGGCCTGGGTACGGG----------------------GAGGCGCTGCT-----GGTGGGAGGTGCTCTTGACTTGGCGGCCCCTCCCCCTCCCTGTCT-CCCTCTAGGGCCTGCCC--------TGGACCGCCAGGGTCCCCACCCTGGCTA-AGAT-CCGAAGCAGGG-GAGCCACCC-T-GCCTGG--------TCCTTGCAGGTGT--------------------------------------TGGGGTGTCCTCCTGCCCCAGGGACCCCGG-----CCTGGCTGATCTTGCTTC---GGGCT-----------------------GCCTTCTTGGGAGGCTTCAGAGACCC-CCAGCTCCACTGCTATACCTC-TGTGTCTGTTTTGCATGTGTTGCTTGAGGGCTGAC--TGTG--------CTAGGTGAGGAGGGACGGCGGCTGAAGGGTT--TA--------------------------GTGT-----------------Aggaggcccagcaggct--gagagcactga---------------cctg-----------------gggaggtcagcagggacttcc
i canFam3.chr3                   C 0 C 0
e dasNov3.JH579681                  845679 955 +   1727078 M
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C

a score=57899.000000
s hg38.chr15_KI270850v1_alt          31354 9 +    430880 tgcaggagg
s panTro5.chr15                   59807626 9 +  83230942 tgtaggaga
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23057643 9 -  99763055 tgtaggagg
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            324879 9 -    378907 tgtaggagg
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      4944 9 -     28805 tgtaggagg
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59992350 9 + 169600520 tgtaggagg
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3913521 9 +   4820037 tgtaggagg
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9776018 9 +  10730278 tgtaggagg
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4023406 9 +   5013933 tttaggagg
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113744213 9 - 132174527 cgtgggagg
i calJac3.chr10                  C 0 I 23
s saiBol1.JH378378                   82575 9 -    125141 cgtgggagg
i saiBol1.JH378378               C 0 I 14
s otoGar3.GL873530                 5781590 9 -  36342412 tataggagg
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90190202 9 + 124595110 CATAGGACG
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58212616 9 +  91889043 cataggagg
i canFam3.chr3                   C 0 C 0
e aotNan1.NW_018503093v1            684265 134 +    730879 I
e dasNov3.JH579681                  845679 955 +   1727078 M
e cebCap1.NW_016107334v1             91463 142 +  11725426 I
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081 0 +  24206276 C
e macFas5.chr7                    61592994 0 + 171882078 C

a score=586367.000000
s hg38.chr15_KI270850v1_alt          31363 170 +    430880 cggaagttgagctgaatcataaa--actcagaagagat-gg-aatgggcattccaaatggaggaaagagct-tgcgc-cagagccctggaggcaaga--------------------------agggaAGGCAGGGCCAGCTATGG-----GGCCTTGAGTGCCAGGCTGAGAAGCTTAGATTTCATCCcagagatgcagtgcagtg
s panTro5.chr15                   59807635 169 +  83230942 cggaagtcgagctgaatcataaa--actcagaagagat-gg-aaagggcattccaaatggaggaaagagct-tgtgc-cagag-cctggaggcaaga--------------------------agggaaggcagggccagctatgg-----ggccttgagtgccaggctgagaagcttagatttcatcccagagatgcagtgcagtg
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23057652 165 -  99763055 cggaagttgagctgaatcataaa--actcagaagagat-gg-aaagggcattccaaatggaggaaagagct-tgtgc-cagag-cctggaggcaaga-----------------------------ggaagcagggcCAGCTAT-G-----GGCCTTGAGTGCCAGGCTGAGAAGCTTAGATTTTCTCCcagagatgcagtgcagtt
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            324888 170 -    378907 cggaagttgagctgaatcataaa--actcagaagagat-gg-aaggggcattccaaatggaggaaagagct-tgcgc-cagagccctggaggcaaga--------------------------agggaAGGCAGGGCCAGCTATGG-----GGCCTTGAGTGCCAGGCTGAGAAGCTTAGATTTCATCCcagagatgcagtgcagtg
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      4953 169 -     28805 cggaagttgagctgaatcataaa--actcagaagagat-gg-aaagggcattccaaatggaggaaagagct-tgtgc-cagaa-cctggaggcaaga--------------------------agggaAGGCAGGGCCAGCTATGG-----GGCCTTGAGTGCCAGGCTGAGAAGCTTAGATTTCATCCcagagatgcagtgcagtg
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59992359 168 + 169600520 tggaagttgagctgaatcataaa--actcagaagagat-gg-aagtggtcttccaaatggaggaaagagct-tgtac-cagag-cctggaggcaaga--------------------------agggaAGGCAGGACCAGCTATAG-----GGCCTCGAGCCCCAGGCTGAGAAGCTTAGACTTCATCCCAGAGA-Gcagtgcagtg
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3913530 161 +   4820037 tggaagttgagctgaatcataaa--actcagaagtgat-gg-aaggggccttccaaatggaggaaagtgct-tgtgc-cagag-cctggaggcaaga--------------------------agagaaggcaggaccagctatgg-----ggccttgaatgccaggctgagaagcttagatttcatcc--------cagtgcaatg
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9776027 168 +  10730278 tggaagttgaactgaatcataaa--actcagaagtgat-gg-aaggggccttccaaatggagg-aagagct-tgtgc-cagag-cctggaggcaaga--------------------------agagaaggcaggaccagctatgg-----ggccttgaatgccaggctgagaagcttagatttcatcccagagatgcagtgcagtg
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4023415 161 +   5013933 tgaaagttgagctgaatcataaa--aatcagaagagat-gg-aagtggccttccaaatagaggaaagcgct-tgcgc-caaag-cctggaggcaaga--------------------------agagaaggcaggaccagctatgg-----ggccttgaatgccaggctgagaagcttagatttcatcc--------cagtgcaatg
i colAng1.NW_012114844v1         C 0 C 0
s otoGar3.GL873530                 5781599 197 -  36342412 tggaggttgagctgaatcagaaaggactcagacgatatggg-gaggggcattccaaac-taggaaagagct-tgtgc-caaag-cctggaggccagaaaacatgtgccctgtctgggccttgtaagggaggcagggttggctgTGG-----GGCCTTGACTGCCAAGTCAACAAGCGTAGATTTCATCCTGGAGATACAGTGCAGTG
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90190211 153 + 124595110 TGGAGAATGAGCCTAATGATGAATGACTCCAGAGATTG-GGTGAGGAGAATCCCAGCTAGAGGCAA--GCT-TGTGG-TACAG-CCTGCC--CATGT--------------------------AAGGCAGGTAG-----GCTGTGA-----GGCTAT-ACTGCTGGGCTCCACAGTTTGCATTTCTTCCTAGGGCTGA---------
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58212625 157 +  91889043 cagcagtttagctgaatcatgaaagactcaggtgaggt-gg-gagaggtgttacattcagagaaaagagctgtgtcctcaaag-cctggaggcgC-A--------------------------TCTGTGTCCAGGGAC--CCATGGGGGATGGCCCTGAGTGCTGGGCC-AGATGTTCAG----CCCCCCTGAG-------------
i canFam3.chr3                   C 0 C 0
e aotNan1.NW_018503093v1            684265 134 +    730879 I
e calJac3.chr10                  113744222  23 - 132174527 I
e dasNov3.JH579681                  845679 955 +   1727078 M
e cebCap1.NW_016107334v1             91463 142 +  11725426 I
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C
e saiBol1.JH378378                   82584  14 -    125141 I

a score=96993.000000
s hg38.chr15_KI270850v1_alt          31533 30 +    430880 tggtggataaagcactggccctggaggctg
s panTro5.chr15                   59807804 30 +  83230942 tggtggataaagcactggccgtggaggctg
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23057817 30 -  99763055 tggtggataaagcactggctgtggaggctg
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            325058 30 -    378907 tggtggataaagcactggccctggaggctg
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      5122 30 -     28805 tggtggataaagcactggccctggaggctg
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59992527 30 + 169600520 tgttggataaagcactggccctggaggctg
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3913691 30 +   4820037 tggtggataaagcactggccctggaggctg
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9776195 30 +  10730278 tggtggataaagcactggccctggagactg
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4023576 30 +   5013933 tggtggataaagcactggccctggaggctg
i colAng1.NW_012114844v1         C 0 C 0
s otoGar3.GL873530                 5781796  9 -  36342412 TGGAGACTA---------------------
i otoGar3.GL873530               C 0 I 1
s canFam3.chr3                    58212782 15 +  91889043 --------------CTGGATCCGTAGTCT-
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  846640 29 +   1727078 tggtggttaaagca-tagacctgaagcctg
i dasNov3.JH579681               M 955 C 0
e aotNan1.NW_018503093v1            684265 134 +    730879 I
e mm10.chr9                       90190364  0 + 124595110 C
e calJac3.chr10                  113744222 23 - 132174527 I
e cebCap1.NW_016107334v1             91463 142 +  11725426 I
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C
e saiBol1.JH378378                   82584 14 -    125141 I

a score=30676.000000
s hg38.chr15_KI270850v1_alt          31563  9 +    430880 -cttatattg-
s panTro5.chr15                   59807834  9 +  83230942 -ctcatatcg-
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23057847  9 -  99763055 -ctcatatcg-
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            325088  9 -    378907 -cttatattg-
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      5152  9 -     28805 -ctcatatcc-
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59992557  9 + 169600520 -ctcatatcc-
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3913721  9 +   4820037 -ctcatatcc-
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9776225  9 +  10730278 -ctcatattc-
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4023606  9 +   5013933 -ctcatatcc-
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                   82598  9 -    125141 -CTCAGATCC-
i saiBol1.JH378378               I 14 C 0
s otoGar3.GL873530                 5781806  9 -  36342412 -GTCATATCC-
i otoGar3.GL873530               I 1 C 0
s mm10.chr9                       90190364  9 + 124595110 -CTTGTATCC-
i mm10.chr9                      C 0 C 0
s dasNov3.JH579681                  846669 11 +   1727078 gttcagaattc
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            684265 134 +    730879 I
e calJac3.chr10                  113744222 23 - 132174527 I
e canFam3.chr3                    58212797  0 +  91889043 C
e cebCap1.NW_016107334v1             91463 142 +  11725426 I
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C

a score=469936.000000
s hg38.chr15_KI270850v1_alt          31572 104 +    430880 cagcaggacgctcatgca----cgttact-ctccctgtctgcctcactttgctcatctgtaaaatggggttaacaatagtacc-atgctatagggccattacccatgagc
s panTro5.chr15                   59807843  98 +  83230942 cagcaggacgctcatgta----cgttact-atccccgtctgcctcactttgctcatctgtaaaatggggataacaatagtacc-------tatgaccattacccataagc
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23057856 105 -  99763055 cagcaggacactcatgta----cgttact-atccccatctgcctcactttgctcatctctaaaatggggataacaatagtacctatgctatagggccattacccatgagc
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            325097 104 -    378907 cagcaggacgctcatgca----cgttact-ctccctgtctgcctcgctttgctcatctgtaaaatggggataataatagtacc-atgctatagggccgttacccatgagc
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      5161 104 -     28805 cagcaggaagctcatg-a----cattact-atccctgtgtgcctcactttgctcatctgtaaaatggggatgacaacagtacctatgctatagggccgttacccatgagc
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59992566 105 + 169600520 cagcaggacgctcatgca----cgttact-atccctgtctgcctcactctgctcatctgtaaaatggggataacaatagtacctaggctatagggccgttacccatgagc
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3913730 103 +   4820037 cagcaggatgctcatgca----cgttacc-atccctgtctgcct--ctctgctcatctgtaaaatggggataacaatagtacctaggctatagggctgttacccatgagc
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9776234 103 +  10730278 cagcaggacgctcatgca----cgttact-atccctgtctgcct--ctctgctcatctgtaaaatggggataacaatagtacctaggctatagggccgttacccatgagc
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4023615 105 +   5013933 cagcaggacgctcatgca----cgttact-atccctgtctgcctcattctgctcatctgtaaaatggggacgacaatagtacctaggctatagggccgttacccatgaac
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113744245 102 - 132174527 CAGCAGGACGCTCATTca----tgttact-atccctgcctgcctcactttcctcatctgtgaaatggagacaacaatagtacctacatcctagggttgctattcatt---
i calJac3.chr10                  I 23 C 0
s saiBol1.JH378378                   82607  99 -    125141 CAGCAGGACGTTCATTca----cattact-atccctgcctgcctcactttcctcatctgtgaaatgggg---acaatagtacctacatcctcgggtggttattcatt---
i saiBol1.JH378378               C 0 C 0
s otoGar3.GL873530                 5781815  83 -  36342412 CAGCAGGATG---------------------tctctg--tgcct--gtttgctcatctgtaaaatggggctaacagta-tccctgaattgt-gggttattacacatgagc
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90190373  83 + 124595110 CCACAGGAGCCCTATGCGGAACAACtaac-ctacctcagtgcttca-tttcctcatctgtaaagtgggtctaacaacagtgtctt-------------------------
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58212797  88 +  91889043 -AGCAGAGCCGGCgggca----agttactcatccctctgggcctcagtctcctcatctgtcacacaggggtgacagaagtacctgtgtcctag-----------------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  846680 102 +   1727078 cagcagggcccacgggca----agttact-taacctctctgt---ggtttcttcacctgcaaaatggggatgacagtactacctaccatgtagagttgctacatatgagt
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            684265 134 +    730879 I
e cebCap1.NW_016107334v1             91463 142 +  11725426 I
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C

a score=47353.000000
s hg38.chr15_KI270850v1_alt          31676 20 +    430880 ttacacatgtgaagtgctga
s panTro5.chr15                   59807941 20 +  83230942 ttacacatgtgaagtgctga
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23057961 20 -  99763055 ttacacatgtgaagtgctga
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            325201 20 -    378907 ttacacatgggaagtgctga
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      5265 20 -     28805 ttacacacgtgaggtgatga
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59992671 20 + 169600520 ttacacatatgaagtgctga
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3913833 15 +   4820037 ttacac-----aagtgctga
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9776337 15 +  10730278 ttacac-----aagtactga
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4023720 15 +   5013933 ttacac-----aagtgctga
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113744347 20 - 132174527 ttacacgtgagaagtcctgc
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   82706 11 -    125141 ttacacgtgag---------
i saiBol1.JH378378               C 0 C 0
s aotNan1.NW_018503093v1            684399 20 +    730879 ttacacgtgagaagtcctgt
i aotNan1.NW_018503093v1         I 134 C 0
s otoGar3.GL873530                 5781898 20 -  36342412 tgacacacataacgagctta
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90190456  8 + 124595110 -----------atgtcatg-
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58212885  9 +  91889043 -------tgtAAAGCA----
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  846782 20 +   1727078 taacatctgaaatgtgctta
i dasNov3.JH579681               C 0 C 0
e cebCap1.NW_016107334v1             91463 142 +  11725426 I
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C

a score=1112809.000000
s hg38.chr15_KI270850v1_alt          31696 197 +    430880 gagtagtgcccggcac-----gt----gatgggtgTGATGGAAGTGAATGAATAAAAGCAGGCTGCG----TGGGGATGAGGAGGGTGTCCCA----GGAGAAAGGCCTGGGCACTTTGGTTTTTTTTAGAAAGAGAATGCCAGCCGGCCCTTAGAGTAGGGGATGGATCCAGCCTTA-TGA---TGA-GACCAGTTTA-------GGTCCCCAAGAGAGGAGTGA
s panTro5.chr15                   59807961 196 +  83230942 gagtagtgcctggcat-----gt----gatgggtgTGATGGAAGTGAATGAATAAAAGCAGGCCGCA----TGGGGATGAGGAGGGTGTCCCA----GGAGAAAGGCCTGGGCACTTTGG-CCTTTTTAGAAAGAAGATGCCAGCCGGCCCTTAGAGTAGGGGATGGATCCAGCCTTG-TGA---TGA-GACCAGTTTA-------GGTCCCCAGGAGAAGAGTGA
i panTro5.chr15                  C 0 I 15246
s panPan2.chr15                   23057981 196 -  99763055 gagtagtgcctggcac-----gt----gatgggtgTGATGGAAGTGAATGAATAAAAGCAGGCCGCA----TGGGGATGAGGAGGGTGTCCCA----GGAGAAAGGCCTGGGAACTTTGG-TTTTTTTAGAAAGAAGATGCCAGCCGGCCCTTAGAGTAGGGGATGGATCCAGCCTTA-TGA---TGA-GACCAGTGTA-------GGTCCCCAAGAGAAGAGTGA
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            325221 197 -    378907 gagtagtgcccggcac-----gt----gatgggtgTGATGGAAGTGAATGAATAAAAGCAGGCCGCG----TGGGGATGAGGAGGGTGTCCCA----GGAGAAAGGCCTGGGCACTTTGGCTTTTTTTAGAAAGAGAACGCCAGCCGGCCCTTAGAGTAGGGGATGGATCCAGCCTTA-TGA---TGA-GACCAGTTTA-------GGTCCCCAAGAGAGGAGTGA
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      5285 196 -     28805 gagtagtgcccggcac-----at----gatgggtgTGACGGAAGTGAATGAATAAAAGCAGGCCGCG----TGGGGATGAGGAGGGTGTCCCA----GGAGAAAGGCCTGGGCACTTTGG-TTTTTTTAGAAAGAAGATGCCAGCTGGCCCTTAGAGTAGGAGATGGATCCAGCCTTA-TGA---TGA-GACCAGTTTA-------GGTCCCCAAGAGAGGAGTGA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59992691 196 + 169600520 gagtagtgcctggcat-----gt----GACGGGTGTGATGGAAGTGAATGAATAAAAGCAGGCCGCA----TGGGGATGAGGAGGGTGTCCCA----GGAGAAAGGCCTGGGCTCTTTGG-TTTTTTCAGAAAGAGAATGCCAGCTGGCCTTTAGTGTAGGGGATGGATCCAGCCTTG-TGA---TGA-GACCAGCTTA-------GGTCCCCAAGTGAGGGGTGA
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3913848 183 +   4820037 gagtagtgcctggcat-----gt----gatgggtgTGACAGAAGTGAATGAATAAAAGCAGGCTGTG----TGGGGATGAGGAGGGTGTCCCA----GGAGAAAGGCCTGGGCACTTTGT-TTTTTTTAGAAAGAGAA-------------TTAGTGTAGGGGATGGATCCAGCCTTA-TGA---TGA-GACCAGTTTA-------GGTCCTCAAGAGAGGGGTGA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9776352 183 +  10730278 gagtagtgcctggcac-----gt----gatgggtgTGACAGAAGTGAATGAATAAAAGCAGGCTGTG----TGGGGATGAGGAGGGTGTCCCA----GGAGAAAGGCCTGGGCACTTTGT-TTTTTTTAGGAAGAGAA-------------TTAGTGTAGGGGATGGATCCAGCCTTA-TGA---TGA-GAACAGTTTA-------GGTCCTCAAGAGAGGGGTGA
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4023735 183 +   5013933 gagtagtgcctggcat-----gt----GACGGGTGTGACGGAAGTGAATGAATAAAAGCAGGCTGTG----TGGGGATGAGGAGGGTGTCCCA----GGAGAAAGGCCTGGGCACTTTGG-TTTTTTTAGAAAGAGAA-------------TTAGTGTAGGGGATGGATCCAGTCTTA-TGA---TGA-GACCAGTTTA-------GGTCCTCAAGAGAGGGGTGA
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113744367 190 - 132174527 gcacagtgcccggcgc-----gt----gatGGGT-TTACAGAAGTGGGTGAATAAAAGCA-GCCTTG----T-GGGCTGAGGAGGGCGATGCA----GGAGAAAGGCCTGAGCATGCTGG--CATTTTAGAAAGAGAATGCCAGCTGGCCCTGAGTGTTGGG--TGGGCCCAGCCTTG-TGA---TGA-GACCAGTTTA-------GGTCCCCAGGAGAGGGGTGA
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   82717 188 -    125141 ---cagtgcccggcgc-----gt----gatgggtgttacagaagtgggtgaataAAAGTA-GCCATG----T-GGGCTGAGGAGGGTGACCCA----AGAGAAAGGCCTGAGCACGCTGG--CATTTTAGAAAGAGAATGCCAGCCAGCCCGGAGTGTTGGG--TGGACCCAGCCTTG-TGA---TGA-GACCAGTTTA-------GGTCCCCAGGAGCGGGTTGA
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             91605 191 +  11725426 gagcagtgcccggcgc-----gt----gataggtgttacagaagtgggtgaataAAAGCA-GCCGTG----T-GGACTGAGGAGGGTGACCCG----GGAGAAAGGCCTGAGCACGCTGG--CATTTTAGAAAGAGAATGCCAGCTGGCCCTGAGTGTTGGG--TGGACCCAGCCTTG-TGA---TGA-GACCAGTTTA-------GGTTCCCAGGAGAGGGGTGA
i cebCap1.NW_016107334v1         I 142 C 0
s aotNan1.NW_018503093v1            684419 191 +    730879 gagcagtgcccggcgc-----gt----gatgggtgttacagaagtgGGTGAATCAGAGCA-GCCGTG----T-GGGCTGAGGAGGGTGATCCA----GGAGAAAGGCCTGAGCTCGCTGG--CATTTTAGAAAGAGAATGCCAGCTGGCCCTGAGTGTTGGG--TGGACCCAGCCTTG-TGA---TGA-GACCAGTTTA-------GGTCCCCAAGAGAGGGGTGA
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5781918 179 -  36342412 gtgtggtgccaggtgcccaaggg----ggcaggcattccacaa----agggACAAAAGCC-GCAGTG----CAGGGATGCGGAGCGTGTCC----------AGAGGCCCAGAACCTTTAT--------------TAAGGTTCTGCTCGCCCTGAGT-TTGGAGATGGACCCAGCCTTA-TTACAGTAA-GACCAGTTCA-------GGTCCCCAGGAGAGGGGTAG
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90190464 167 + 124595110 gagtagtGCTGGGCAC-----ACCCAAGAACAGGGTTGCTTAATGGAAAAAGAGAATTCA------------------------GGCGACCCATTGCAAGGAAAGGCCCCAG-----TGG--CTTTCCAGGACAGGAG--------------------AGATGATGGATCAGGCTCAACTGA---TAATGATCAGTTCATTTTCCTAGTTTCCCAGACAGTGATGG
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58212894 104 +  91889043 ---------------------------------TATAAGGTCAGTGAAAGGAGAGAGGCCAGCAGCA------------AGGATGGTGTCCCA----AAGGAAGGGTGCAGGC----CGA--------------------------------------------------------TG-ACA---TGG-AGCCAGC-CA-------GGTCTCTAGGAGAGGGGTAA
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  846802 197 +   1727078 -gagagtgccaggcat-----gc----agtgggtgcCAAGCATGTGAAAGACTAGAAAAAGGCCGTGGGGGTGGGGATAGGCATGGTGTCCCA----GGGAGAAGGCCGAGTCACTTGGG--TGTTTTAGAAAGGTCG----CGCTGGCCCTGGGCCTGGGGGACAGGCCCAGCCTTG-TGACATCGA-GCCTAGCCAA-------GGGCTCCAGGAGAGGAGTGA
i dasNov3.JH579681               C 0 C 0
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C

a score=73492.000000
s hg38.chr15_KI270850v1_alt          31893 14 +    430880 --CGGGGCAT-G-GCCAC
s panPan2.chr15                   23058177 14 -  99763055 --TGGGGCAC-G-GCCAG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            325418 14 -    378907 --CGGGGCAT-G-GCCAC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      5481 14 -     28805 --CGGGGCAT-G-GCCAC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59992887 14 + 169600520 --TGGGGCAT-G-GCCAC
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3914031 14 +   4820037 --CGGGGCAT-G-GCCAC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9776535 14 +  10730278 --CAGGGCAT-G-GCCAC
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4023918 14 +   5013933 --CGGGGCAT-G-GCCAC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113744557 14 - 132174527 --TGGGGCAT-G-GACAC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   82905 14 -    125141 --CGGGGCAT-G-GCCAT
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             91796 14 +  11725426 --CGGGGCAT-G-GCCAT
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            684610 14 +    730879 --CGGGGCAT-G-GACAC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5782097 15 -  36342412 --TGGGGTATGG-GCCAT
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90190631 15 + 124595110 --TGGGCTAT-GAGCCAT
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58212998 14 +  91889043 --AGAGGTGT-G-GGTCC
i canFam3.chr3                   C 0 I 1
s dasNov3.JH579681                  846999 10 +   1727078 CGTGGTTTAT--------
i dasNov3.JH579681               C 0 C 0
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C
e panTro5.chr15                   59808157 15246 +  83230942 I

a score=7403548.000000
s hg38.chr15_KI270850v1_alt          31907  867 +    430880 GGGGTCAGGATTT-------------GTGGCACCTCCGCAAGGTTTTGGTGACCCATGACAGATCCGA-----GCA-------ATTT--------GGGGAGCTCAGACTT-------------------------------------------------------------------------------------------------TAAAGCTAATG--GCGAAATCTTT---GGCATCAGCAGGC-GGAGGCAAGTGGGGAGAGATGTGAGGGGAGCAGGT-GGGGATAAGCAAGCTTCTCACCCCAGGCA-------------C-AACCCTTGCCTGACAGGGTATGTGGACGTGGGGCTGATCCCAGCCAGCACACGTGAGGTCCGCATCCAGGAGGTGGCTGAGGCTGCCAACTTCCTGGCACTGCAGAGCGAGGACCCGGAGAAGTACTTCCTCAATGGTGGCTGGACCATCCAGTAGAACGGGGACTACCAGGTGGCAGGGACCACCGTCACATACGCACGCAGGGGCAACTGGGAGAACCTCACGTCCCCGGGTCCCACCAAGGAGCCTGTCTGGATCCAGGTGCCTGCCTCCCGAGGCCCAGGCGTGG--GGAGCA--GA-GGC----------------------GGAG-TCCCCAGGCCC----AGCACC-----------------------TCCCATGGTA-GGTCTC-GTCCTGGAGGAGT--GAGCCCTGGGTTAGTCACAGAGCCT----GGCTCTGAG-----------------CCAGACCCTCCTG------------CTGAGGCCTCT--------ACCTCGGTTTCCCCATC-TTTAAGATGGCCCAACTGTGTAGCTGCAGTTCACAGAGGTGGCTGGGGTCAGCTCCTTTAAGA--------CTGGGTG-----------------G--------------ATGGAGAAGAC------------------ACCTCGTGCTCACGGGC-CCCCGCCTGCCCA-CCCAGCTGCTGTTCCAGGAGAGCAACCCTGGGGTGCACTACGAGTACACCATCCACAGGGAGGCAGGTGGCCACGGCGAGGTCCCGCCGCCCGAGTTCTCCTGGCACTGTGGGCCCTGGACCAAGTGTACAGTCACCTGTGGCAGAGGTGAGA
s panTro5.chr15                   59823403  872 +  83230942 GGGGTCAGGATTT------------TGTGGCACCTCTGCAAGGTTTTG-TGACCCATGACAGATC-GA-----GCA-------ATTT--------AGGGATGCCAGACTT-------------------------------------------------------------------------------------------------TAAAG-TAATG--GCGAAATCTTT---G-CATCAGCAGGC-GGAGGCAAGTGGGGGAAGATATGAGGGGAGGCGGT-GGGGATAAGCAACCCTCTCACCCTGGGCAA--AGCCTATGCAC-AACCCTTGGCTGCCAGGGTATGTGGACGTGGGGCTGATCCCAAGCCGCGCACGAGAGATCCGCATCCAGGAGGTTGCTGAGGCTGCCAACTTCCTG-CACTGCGGAGCGAGGACCCGGAGAAGTACTTCCTCAATGATGGCTGGACCATCCAGTGGAACGGGGACTACCAGGTGGCAGGGACCACCTTCACATACGCAGGCAGGGGCAACTAGGAGAACCTCACGTCCCCGGGTCCCACCAAGGAGCCTGTCTGGATCCAGGTGCCTGCCTCCCGTGGCCCAGGCTGGG--GGAGCA--GA-GGT----------------------GGAG-TCCCCAGGCCC----AGCACC-----------------------CTCCATGGCA-GGTCTC-GTCCTGGAGGAGT--GAGCCCTGGTTCAGTCACAGAGCTT----GGCTCTGAG-----------------CCCAGCCCTCCTG------------CTGCGGCCTCT--------ACCTCGGTTTCCCCATC-TTTTAAATGGCCCAGTCATGTAGCTGCAGTTCACAGAAGTGGCTGGCATCGGCTCCTTTAGGA--------CTGGGTG-----------------G--------------ATGGAGAAGAC------------------ACCTCATGCTCGTGGG---CCCGCCTGCCCA-CCCAGCTGCTGTTCTAGGAAAGCAACCCCGGGGTACACTACGAGCACACCATCCACAGGGAGGCAGGTGGCCACGGCGAGGTCCCGCTGCCCGAGTTCTCCTGGCACTGTGGGCCCTGGACCAAGTGCATAGTCACCTGCAGCAGAGGTGAGA
i panTro5.chr15                  I 15246 C 0
s panPan2.chr15                   23058191  878 -  99763055 GGGGTCAGGATTT-------------GTGGCACCTCTGCGAGGTTTTGGTGACCCAAGACAGATCCGA-----GCA-------ATTT--------AGGGAGCTCAGACTT-------------------------------------------------------------------------------------------------TAAAGCTAATG--GCGAAATCTTT---GGCATCAGCAGGC-GGAGGCAAGTGGGGAGAGATATGAGGGGAGCGGGT-GGGGATAAGCAACCCTCTTACCCTGGGCAC--AACCTATGCAC-AACCCTTGGCTGACAGGGTATGTGGACGTGGGGCTGATCCCAGCCGGCGCACGCGAGATCCGCATCCAGGAGGTTGCCGAGGCTGCCAACTTCCTGGCACTGCGGAGCGAGGACCCGGAGAAGTACTTCCTCAATGGTGGCTGGACCATCCAGTGGAACGGGGACTACCAGGTGGCAGGGACCACCTTCACATATGCACGCAGGGGCAACTGGGAGAACCTCACGTCCCCGGGTCCCACCAAGGAGCCTGTCTGGATCCAGGTGCCTGCCTCCCGAGGCCCAGGCGGGG--GGAGCA--GA-GGC----------------------GGAG-TCCCCAGGCCC----AGCACC-----------------------CTAAATGGCA-GGTCTT-GTCCTGGAGGAGT--gagccctggttcagtcacagagcct----ggctctgag-----------------ccagaccctcctg------------ctgaggcctct--------acctcagtttccccatc-tttaaaatggCCCAATCTTGTAGCTGCAGTTCACAGAGGTGGCTGGGGTCAGCTCCTTTAGGA--------CTGGGTG-----------------G--------------ATGGAGAAGAC------------------ACCTCGTGCTCACGGGC-CCCCGCCTGCCCA-CCCAGCTGCTGTTCCAGGAGAGCAACCCCGGGGTACACTACGAGTACACCATCCACAAGGAGGCAGGTGGCCACGACGAGGTCCCACCGCCCGAGTTCTCCTGGCATTATGGGCCCTGGACCAAGTGCACAGTCACCTGCGGCAGAGGTGAGA
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            325432  867 -    378907 GGGGTCAGGATTT-------------ATGGCACCTCTGCAAGGTTTTGGCGACCCATGACAGATCCGA-----GCA-------ATTT--------GGGGAGCTCAGACTT-------------------------------------------------------------------------------------------------TAAAGCTAATG--GCGAAATCTTT---GGCATCAGCAGGC-GGAGGCAAGTGGGGAGAGATGTGAGGGGAGCAGGT-GGGGATAAGCAAGCTTCTCACCCCGGGCA-------------C-AACCCTTGCCTGACAGGGTATGTGGACGTGGGGCTGATCCCAGCCAGCACACGTGAGGTCCGCATCCAGGAGGTGGCTGAGGCTGCCAACTTCCTGGCACTGCAGAGCGAGGACCCAGAGAAGTACTTCCTCAATGGTGGCTGGACCATCCAGTAGAACGGGGACTACCAGGTGGCAGGGACCACCGTCACATACGCACGCAGGGGCAACTGGGAGAACCTCACGTCCCCGGGTCCCACCAAGGAGCCTGTCTGGATCCAGGTGCCTGCCTCCCGAGGCCCAGGCGGGG--GGAGCA--GA-GGC----------------------GGAG-TCCCCAGGCCC----AGCACC-----------------------TCCCATGGTA-GGTCTC-GTCCTGGAGGAGT--GAGCCCTGGGTTAGTCACAGAGCCT----GGCTCTGAG-----------------CCAGACCCTCCTG------------CTGAGGCctct--------acctcggtttccccatc-tttaaaatggCCCAACTGTGTAGCTGCAGTTCACAGAGGTGGCTGGGGTCAGCTCCTTTAAGA--------CTGGGTG-----------------G--------------ATGGAGAAGAC------------------ACCTCGTGCTCACGGGC-CCCCGCCTGCCCA-CCCAGCTGCTGTTCCAGGAGAGCAACCCTGGGGTGCACTACGAGTACACCATCCACAGGGAGGCAGGTGGCCACGGCGAGGTCCCGCCGCCCGAGTTCTCCTGGCACTATGGGCCCTGGACCAAGTGTACAGTCACCTGCGGCAGAGGTGAGA
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      5495  878 -     28805 AGGGTCAGGATTT-------------GTGGCACCTCTGCGAGGTTTTGGTGACCCAAGACAGATCCGA-----GCA-------ATTT--------GGGGAGCTCAGACTT-------------------------------------------------------------------------------------------------GAAAGCTAATG--GCGAAATCTTT---GGCATCAGCAGGC-GGAGGCAAGTGGGGAGAGACATGAGGGGAGCAGGC-TGGGATAAGCAACCTTCTCACCCTGGGCAC--AACCTATGCGC-AACCCTTGGCTGACAGGGTATGTGGACGTGGGGCTGATCCCAGCCGGCGCACGTGAGATCCGCATCCAGGAGGTGGCCGAGGCTGCCAACTTCCTGGCACTGCGGAGCGAGGACCCAGAGAAGTACTTCCTCATTGGTGGCTGGACCATCCAGTGGAACGGGGACTACCAGGTGGCAGGGACCACCTTCACATACGCACGCAGGGGCAACTGGGAGAACCTCACGTCCCCAGGTCCCACCAAGGAGCCTGTCTGGATCCAGGTGCCTGCCTCCCGAGGCCCAGGCGGGG--GGAGCA--GA-GGC----------------------GGAG-TCCCCAGGCCC----AGCACC-----------------------CCCCATGGCA-GGCCTG-GTCCTGGAGTAGT--GAGCCCTGGGTCAGTCACAGAGCCT----GGCTCTGAG-----------------CCAGGCCCTCCTG------------CTGCGGCCTCT--------ACCTCGGTTTCCCCATC-TTTAAAATGGCCCAATCGTGTAGCTGCAGTTCACAGAGGTGGCTGCGGTCAGCTCCTTTAGGA--------CTGGGTG-----------------G--------------ACGGAGAAGGC------------------ACCTCGTGCTCATGGGC-CCCCGCCTGCCCA-CCCAGCTGCTGTTCCAGGAGAGCAACCCCGGGGTGCACTACGAGTACACCATCCACAGGGAGGCAGGTGGCCACGGCGAGGTCCCGCTGCCCGAGTTCTCCTGGCACTATGGGCCCTGGACCAAGTGCACAGTCACCTGCGGCAGAGGTGAGA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59992901  878 + 169600520 GGGGTCAGGATTT-------------GTGGCACCTCTGCGAGGTTTTGGTGGTCTATGACAGATCTGA-----GCA-------ATTT--------GGGGAGCTCAGACTT-------------------------------------------------------------------------------------------------TAAAGCTAATG--GCGAAATCTTT---GGCATCAGCAGGC-GGAGGCAAGTGGGGAGAGACGTGAGGGAAGCGGGT-GGGGATAAGCAACCTTCTCATCCTGGGCAC--AACCTACCCAC-AACCCTTGGCTGACAGGGTATGTGGACGTGGGGCTGATCCCAGCCGGCACACGCGAGATCTGCATCCAGGAGGTGGCCAAGGCTGCCAACTTCCTGGCACTGCAGAGCGAGGACCCAGAGAAGTACTTCTTCAGTGATGGCTGGACCATCCAGTGGGACGGGGACTACCAGGTGGCAGGGATCACCTTCATATACGCACGCAGGGGCAACCGGGAGAACCTCACGTCCCTGGGTCCCACCAACAAGCCTGTCTGGATCCAGGTGCCTGCCTCCCAAGGCCCAGGGTGGG--GGAGCG--GA-GGC----------------------GCAG-TCCCCAGGCCT----AGCACC-----------------------CCTTATGGCA-GGTCTC-GTCCTGGAAGAGT--gagccctgggtcagtcacagagcct----ggctctgag-----------------cgaggccctcctg------------ctgcagcctct--------acctcaattttctcatc-tttaaaatggcccaatggtgtagctacagttcacagaggtgGCTGGGGTTGGCTCCTTTAGGA--------CTGGGTG-----------------G--------------ATGGAGAAGAC------------------ACCTCGTGCTCACGGGC-TCCTGCCTGCCCA-CCCAGCTGCTGTTGCAGGAGAGCAACCCCGGGGTGCGCTACGAGTACACCATCCACAGGGAGGCAGGTGGCCATGGCAAGGTCCTGCCGCCCGAGTTCTCCTGGCACTATGGGCCCTGGACCAAGTGCACAGTCACCTGTGGCAGAGGTGAGA
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3914045  879 +   4820037 GGGGTCAGGATTT-------------GTGGCACCTCTGTGGGGTTTTGGTGACCCACGACACATCTGA-----GCA-------ATTT--------TGGGAGCTCAGACTT-------------------------------------------------------------------------------------------------TAAAGCTAATG--GCGAAATCTTT---GGCATCAGCAGGC-AGAGGCAAGTGGGGAGAGATGTGAGGGAAGCAGGTGGGGGATAAGCAACCTTCTCACCCTGGGCAC--AACCTACCCAC-AACCCTTGGCTGACAGGGTATGTGGATGTGGGGCTGATCCCAGCCGGCGCACGCGAGATCCGCATCCAGGAGGTGGCCGAGGCTGCCAACTTCCTGGCACTGCGGAGCGAGGACCCGGAGAAGTACTTCCTCAATGGTGGCTGGACCATCCAGTGGAACGGGGACTACCAGGTGGCCGGGACCACCTTCACATACGCACGCAGGGGCAACTGGGAGAACCTCACGTCCCCGGGTCCCACCAACGAGCCTGTCTGGATCCAGGTGCCTGCCTCCTGAGGCCCAGGGTGGG--GGAGCG--GA-GGC----------------------GCAG-TCCCCAGGCTC----AGCACC-----------------------CCTCATGGCA-GGTCTC-GTCCTGGAGGAGT--GAGCCCTGGGTCAGTCACAGAGCCT----GGCTCTGAG-----------------CCAGGCCCTCCTG------------CTGTGGCCTCT--------ACCTTGGTTTCCCTATC-TTTAAAATGGCCCAATGGTGTAGCTGCAGTTCACAGAGGTGGCTGGGGTTGGCTCCTTTAGGA--------CTGGGTG-----------------G--------------ATGGAGAAGAC------------------ACCTTGTGCTCACGGGC-TCCTGCCTGCCCA-CCCAGCTGCTGTTCCAGGAGAGCAACCCCGGGGTGCGCTACGAGTACACCATCCACAGGGAGGCAGGCGGCCATGACGAGGTCCCGTCACCCGAGTTCTCCTGGCACTATGGGCCCTGGACCAAGTGCACAGTCACCTGTGGCAGAGGTGAGA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9776549  878 +  10730278 GGGGTCAGGATTT-------------GTGGCACCTCTGTGGGGTTTTGGTGACCCACGACACATCTGA-----GCA-------ATTT--------TGGGAGCTCAGACTT-------------------------------------------------------------------------------------------------TAAAGCTAATG--GCAAAATCTTT---GGCATCAGCAGGC-AGAGGCAAGCGGGGAGAGATGTGAGGGAAGCGGGT-GGGGATAAGCAACCTTCTCACCCTGGGCAC--AACCTACCCAC-AACCCTTGGCTGACAGGGTATGTGGACGTGGGGCTGATCCCAGCCGGCGCACGCGAGATCCGCATCCAGGAGGTGGCCGAGGCTGCCAACTTCCTGGCACTGCGGAGCGAGGACCCGGAGAAGTACTTCCTCAATGGTGGCTGGACCATCCAATGGAACGGGGACTACCAGGTGGCAGGGACCACCTTCACATACGCACGCAGGGGCAACTGGGAGAACCTCACGTCCCCCGGTCCCACCAACGAGCCTGTCTGGATCCAGGTGCCTGCCTCCCGAGGCCCAGGGTGGG--GGAGCG--GA-GGC----------------------GCAG-TCCCCAGGCTC----AGCACC-----------------------CCTCATGGCA-GGTCTC-GTCCTGGAGGAGT--GAGCCCTGGGTCAGTCACAGAGCCT----GGCTCTGAG-----------------CCAGGCCCTCCTG------------CTGTGGCCTCT--------ACCTTGGTTTCTCTATC-TTTAAAATGGCCCAATGGTGTAGCTGCAGTTCACAGAGGTGGCTGGGGTTGGCTCCTTTAGGA--------CTGGGTG-----------------G--------------ATGGAGAAGAC------------------ACCTCGTACTCACGGGC-TCCTGCCTGCCCA-CCCAGCTGCTGTTCCAGGAGAGCAACCCCGGGGTGCGCTACGAGTACACCATCCACAGGGAGGCAGGCGGCCATGGCGAGGTCCCGCCACCCGAGTTCTCCTGGCACTATGGGCCCTGGACCAAGTGCACAGTCACCTGTGGCAGAGGTGAGA
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4023932  897 +   5013933 GGGGTCAGGACCT-------------GTGGCACCTCTGTGAGGTTTTGGTGACCCACGGCACATCTGA-----GCA-------ATTT--------TGGGAGCTCAGACTT-------------------------------------------------------------------------------------------------TAAAGCTAATG--GTGAAATCTTT---GGCATCAGCAGGA-GGAGGCAAGTGGGGAGAGAAGTGAGGGAAGCGGGTGGGGGATAAGCAACCTTCTCATCCCGGGCAC--AACCTACGCAC-AACCCTTGGCTGACAGGGTATGTGGACGTGGGGCTGATCCCAGCCGGCGCACGCGAGATCCGCATCCAGGAGGTGGCCGAGGCTGCCAACTTCCTGGCACTGCGGAGCGAGGACCCGGAGAAATACTTCCTCAACGGTGGCTGGACCATCCAGTGGAACGGGGACTACCAGGTGGCAGGGACCACCTTCACATACGCACGCAGGGGCAACTGGGAGAACCTCACGTCCCCGGGTCCCACCAACGAGCCTGTCTGGATCCAGGTGCCTGCCTCCTGAGGCCCAGGGTGGG--GGAGCG--GA-GGC----------------------GCAG-TCCCCAGGCCC----AGCACC-----------------------CCCGATGGCA-GGTCTC-GTCCTGGAGGAGT--GAGCCCTGGGTCAGTCACAGAGCCT----GGCTCTGAG-----------------CCAGGCCCTCCTG------------CTGTGGCCTCT--------ACCTCGATTTTCTCATC-TTTAAAATGGCCCAGTGGTGTAGCTGCAGTTCACAGAGGTGGCTGGGGTCGGCTCCTTTAGGA--------CTGGGTG-----------------G--------------ATGGAGAAGACTGGGTGGATGGAGAAGATACCTCGTGCTCACAGGC-TCCTGCCTGCCCA-CCCAGCTGCTGTTCCAGGAGAGCAACCCCGGGGTGCGCTACGAGTACACCATCCACAGGGAGGCAGGCGGCCATGGCGAGGCCCCGCCGCCCGAGTTCTCCTGGCACTATGGGCCCTGGACCACGTGCACAGTCACCTGCGGCAGAGGTGAGA
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113744571  847 - 132174527 GAGGTCAGGATTT-------------GGGGTGCCTCTGTGAGGTTTTGGTGACCTACGACATATCTGA-----GCA-------ATTC--------TGGGAGCTCAGACTT-------------------------------------------------------------------------------------------------TTAAGGTAATA--GTGGAATCTTT---GGCATCAGCAGGTGGGGGGAAAGTGGGGAGAGAGGTGAGAGTGGTGGGT-GGGGATAGGCAACCCTGTCACCCTGAGCAC--AACTTACACAC-AACCCCTGGCCGGCAGGGTATGTGGATGTGGGGCTGATCCCAGCTGGCGCACGTGAGATCCGCATCCAGGAGGTGGCCGAGGCTGCTAACTTTCTGGCACTGCGGAGCCAGGACCCGAAGAAATACTTCCTCAATGGCGGCTGGACCATCCAGTGGGACGGGGACTACCAGGTGGCAGGGACCACCTTCACATACACACGCAGGGGCAACTGGGAGAACCTCACGTCCCCAGGTCCTACCAACGAGCCTATCTGGATCCAGGTACCTGCTTCCTGAGGCCCAAGAG-GG--GGAGCA--GA-GGC----------------------AGAG-ACCCCAGGTCC-------------------------------------ATGGCAGGGTCTC-ATCCTGGAGGAGT--GAGCCCTGGGGCAGTCACAGAG-----------------------------------------TCCTG------------TTGCAACCTCT--------GCCTCAGTTTCCCCATCTTTTAAAATGGCCCCATGGTGTAGCTGCAGTT--CAGAGGTGGCTGGGGTCAGCTCCTTTAGGG--------CTGGGTG-----------------G--------------ATGGAGAGGAT------------------GCCTTGTGCTCACAGGG--CACGCCTGCCCG-CCCAGCTACTGTTCCAGGAGAGCAACCCCGGGGTGCACTATGAGTACACCGTCCACAGGGAGGCAGATGGCCATGGCGAAGTCCCGCCACCTGAGTTCTCCTGGCACTATGGACCCTGGAGCGAGTGCACGGTCACCTGCGGCACAGGTGAGA
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   82919  869 -    125141 AGGGTCAGGATTT-------------GAGGCGCCTCTGTGAGGTTTTGGTGACCTACGACATATCTAA-----GCA-------ATAG--------GGGGAGCTCAGACTT-------------------------------------------------------------------------------------------------CTAAGGTACCG--GTGGAATCTTT---GGCATCAGCAGGCAGGGGGCCAGTGGGGAGAGAGGTGAGGGCAGTGGGT-GGGGATAGGCAACCCTGTCACCCCAAGCAC--AACCTATACAC-AACCCGTGCCCGGCAGGGTATGTGGACGTGGGGCTGATCCCAGCTGGCGCACGTGAGATCCGCATCCAGGAGGTGGCCGAGGCTGCTAACTTCCTGGCACTGCGGAGCGAGGACCCGAAGAAGTACTTCCTCAACGGTGGCTGGACCATCCAGTGGGACGGGGACTACCAGGTGGCAGGGACCACCTTCACATACTCACGCAGGGGCAACTGGGAGAACCTCACGTCCCCGGGGCCCACCAACGAGCCTGTCTGGATTCAGGTGCCCGCATCCCAAGGCCCAGGAGTGG--GGAGCA--GA-GGC----------------------GGAG-ACCCCAGGCCC-------------------------------------ATGGCAGGGTCTC-ATCCTGAAGGAGT--GAGCCCTGGAGCAGTCACAGAGCCT----GGCTCTTAG-----------------CCAGGCCCTCCTG------------CTGCAACCCCT--------GCCTCAGTTTCCCCATCTTTTAAAATGGCCCCATGATGTAGCTGCAGTT--CAGAGGTGGCTGGGGCCAGCTCCTCTAGGG--------CTGGGTG-----------------G--------------ATGGAGAGGAT------------------GCCTTGTGCTCACGGGG-CCCCACCTGCCCG-CCCAGCTGCTGTTCCAGGAGAGCAACCCCGGGGTGCGCTATGAGTACACCGTCCACAGGGAGGCAGATGGCCATGGCGAGGTCCCGCCGCCCGAGTTCTCTTGGCACTACGGACCCTGGACCAAGTGCACGGTCACCTGCGGCACAGGTGAGA
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             91810  860 +  11725426 GGGGTCAGGATTT-------------GGGGCACCTCTGTGA------GGTGACCTACGACATATCTGA-----GCA-------ATTC--------AGGGAGCTCAGACTT-------------------------------------------------------------------------------------------------TAAAGG-AACA--GTGGAATCTTT---GGCATCAGCAGGC-GGGGGCAAGTGGGGAGAGAGGTGAGGGCAGTGGGT-GGGGATAGGCAACCCTGTCACCCCAAGCAC--AACCTATACAC-AACCCGTGGCTGGCAGGGTATGTGGACGTGGGGCTGATCCCAGCTGGCGCACGTGAGATCCGCATCCAGGAGGTGGCGGAGGCTGCTAACTTCCTGGCACTGCGGAGCGAGGACCCGAAGAAGTACTTCCTCAACGGCGGCTGGACCATACAGTGGGACGGGGACTACCAGGTGGCAGGGACCACCTTCACATACGCACGCAGGGGCAACTGGGAGAACCTCACATCCCCAGGTCCCACCAACGAGCCTGTCTGGATCCAGGTGCCTGCTTCCCAAGGCCCAGGAGGGG--GGAGCA--GA-GGC----------------------GGAG-ACCCCAGGCCC-------------------------------------ATGGCAGGGTCTC-ATCCTGAAGGAGT--GAGCCCTGGGGCAGTCACAGAGCCT----GGCTCTCAG-----------------CCAGGCCCTCCTG------------CTGCAAtctct--------gcctcagtttccccatcttttaaaatggCCCCATGGTGTAGCTGCAGTT--CAGAGGTGGCTGGGGTCAGCTCCTCTAGGG--------CTGGGTG-----------------G--------------ATGGAGAGGAC------------------GGCTCGTGCTCACGGGG--CCCGCCTGCCCG-CCCAGCTGCTGTTCCAGGAGAGCAACCCCGGGGTGCGCTATGAGTACACCGTCCACAGGGAGGCAGATGGCCATGGTGAAGTCCTGCCGCCTGAGTTCTCCTGGCACTACGGACCCTGGACCAAGTGCACAGTCACCTGCGGCACAGGTGAGA
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            684624  793 +    730879 G-----------------------------------------------------------------------------------------------GGGAGCTCAGACTT-------------------------------------------------------------------------------------------------TTAAGGTAACG--GTGGAATCTTT---GGCATCAGCAGGC--GGGGCAAGTGGGGAGAGAGGTGAGGGCAGCGGGT-GGGGATAGGCGACCCTCTCACCCCGAG-------------CAC-AACCCCTGGCCGGCAGGGTACGTGGACGTGGGGCTGATCCCAGCCGGCGCACGCGAGATCCGCATCCAGGAGGTGGCCGAGGCTGCTAACTTCCTGGCACTGCGGAGCGAGGACCCGAAGAAGTACTTCCTCAACGGCGGCTGGACCATCCAGTGGGACGGGGACTACCAGGTGGCGGGGACCACCTTCACATACGCACGCAGGGGCAACTGGGAGAACCTCACGTCCCCAGGTCCCACCAACGAGCCTGTCTGGATCCAGGTGCCTGCCTCCCGAGGCCCAGGAGTGG--GGAGCA--GA-GGC----------------------GGAG-ACCCCAGGCCC-------------------------------------ACGGCAGGGTCTC-ATCCTGGAGGAGT--GAGCCCTGGGGCAGTCGCAGAGCCT----GGCTCTCAG-----------------CCAGGCCCTCCTG------------CTGCAGCCTCT--------GCCTCAGTTTCCCCATCTTTTGAAATGGCCCCATGGTGTAGCTAAAGTT--CAGAGGTGGTTGGGGTCGGCTCCTTTAGGG--------CCGGGTG-----------------G--------------ATGGAGAGGAC------------------GCCTCGTGCTCACGGGG--CCCGCCTGCCCG-CCCAGCTGCTGTTCCAGGAGAGCAACCCCGGGGTGCGTTATGAGTACACCGTCCACAGGGAGGCAGATGGCCACGGCGAGGTCCCGCCGCCCGAGTTCTCCTGGCACTACGGACCCTGGACCAAGTGCACGGTCACCTGCGGCACAGGTGAGA
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5782112  865 -  36342412 GGAGACAGGATTT-------------GGGGACCCTTTGTGAGCTTTTGGTGACCTAAGATAGATTTGA-----GCGTCTCCGTTTTA--------GGGGAGCTCA-------------------------------------------------------------------------------------------------------------AATA--GTGGAATCTGT---GGCATCAACAGGT-GGGGGCAGGTGAAGAGAGAGGCAAGGG----AGGG-GGAGGCAGCCGACCCCCTGGCCCGGGACAC--AGCTGCTGCAC-TACCCTTGGCC-ACAGGGTATGTGGATGTGGGGCTGATCCCAGCCGGCGCGCGTGAGATCCGCATCGAGGAGGTAGCCGAGGCTGCCAATTTCCTGGCGCTGCGGAGTGAGGACCCAGATAAGTACTTCCTCAATGGTGGCTGGACTATCCAATGGAATGGGGACTACCAGGTGGCAGGGGCCACTTTCACATACGCACGCATGGGCAACTGGGAGAACCTCACGTCCCCGGGACCCACCAATGAACCTGTCTGGATCCAGGTACTTGCC-CCTGAGGCCCAGGTGGGG--GGAGCA--GA-GGT----------------------GCAG-TCCCCAGACCC----AGCCCC-----------------------CT--GGGGCAGGGTGTG-ACCCTGGAGGGGT--GAGCCCTGGGAT----------------------------------------------GGCCCTACTG------------CTAGAACCTCT--------GCCCTGGTTTCCTCATC-TCT-ATGCAGCCCTG-GGTGTAGTCCCAGTTGCCAGGGTTGTCTGGGATCAGCTGCCTTAGGGTGTTCAGCCTGGGTGGCAGGACTGGGAGGGCTG--------------ATGACGAGGCT------------------GCCTGGCGCTCATGGGGTCCTTGCCCTCTGC-CCCAGCTGTTGTTCCAGGAGAGCAACCCTGGGGTGCGCTATGAGTACACCATTCACAGGGAGGTCCATGGCCACGGCGAGGCCACACCACCGGAGTTCTCCTGGCACTATGGGCCCTGGACCAAGTGTACGGTCACTTGTGGCACAGGTGAGA
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90190646  860 + 124595110 AGGGGAAGGATCT-------------GTGGGCCCTTTCTGAAGCCTTGGTGACCCAGAGTGGATACAATACCTATA-------TTTTTTTGGGGGAGGGGACTCAGAATA-------------------------------------------------------------------------------------------------ATGAACTGATGGTGTGGAGTCGTT---GGCTTCAGCA-GC-AGAAGCAAGTGCAGGAAGGTG---------------GGGGGCAACTGACTGATTAAACCCGGGGACCAAAC---TGTAC-CATCCT--GCCCACAGGGTATGTGGATATAGGGCTGATCCCAGCCGGAGCCAGAGAGATTCTTATTGAGGAGGTGGCTGAGGCTGCCAACTTCCTGGCCCTGCGGAGTGAGGACCCAGATAAGTACTTCCTCAATGGAGGCTGGACCATCCAGTGGAATGGAGACTACCGAGTGGCAGGCACTACCTTCACCTATGCACGGAAGGGCAACTGGGAGAATCTCACATCCCCAGGCCCCACCAGTGAGCCTGTCTGGATCCAGGTGCCTGCCTCTAGGGGCCAGGATGGGA--GGAATA--AATGGG----------------------GTGG-TCCCC-------------------------------------------AAGGTAGGATATC-A------AGGGGG--AAACCTTAGGGC-TCTGTAGGATCT----GATTCTGAG-----------------CTATGCTCAGCTG------------CTGGGGTCTCTGAGTCTCGGTCTCAGTTTTCTCCTC-TCTAGAGTAGGTCTCCAGTACAGCT-TAGTTCACAGAGATGGCTGGAGATGACCC---TAGGG-GCAGGTTCTGAGCA-----------------G--------------ATAGAGAAGAG------------------CCCTTGTGCTCACTGGC-CCCCATTTGCCTGTCCCAGCTGCTGTTCCAGGAGAAGAACCCTGGGGTACACTACCAGTATACCATCCAGAGGGA------CAGCCATGATCAAGTCCGACCACCTGAGTTCTCCTGGCATTATGGGCCCTGGAGCAAGTGCACGGTCACTTGTGGCACAGGTGAGA
i mm10.chr9                      C 0 I 1512
s canFam3.chr3                    58213013  966 +  91889043 GACAGCAGGATTTGAGCCCTTCTGAGGAGGAGCCCTTCTGAGATTTAGGTGACCTAGGACAGATTGAA-----GCTCCACCT-TTGG--------GGGGAGCTTGGAATC-------------------------------------------------------------------------------------------------TTGAGGTAATG--G---AATC--T---GCCACCAGCGGCC-TGGAGAA---GGGGAGACA----AGAGAAGGGGCT-GAGGGCAGCCCACACCCTCACACTCTGAAC--------------AACCCCTGGCCAATAGGGTACGTGGACGTGGGGCTGATCCCAGCCGGTGCCCGTGAGATCCGCATCGAGGAGATGGCCGAGGCTGCCAACTTCCTGGCCCTGCGCAGTGAGGACCCTGATAAGTACTTCCTGAATGGGGGCTGGACCATTCAGTGGAATGGGGACTACCAGGTGGCCGGCACCACCTTCACGTACGCACGCACAGGCAACTGGGAGAACCTCACGTCCCCAGGGCCCACCAACGAGCCCATATGGATTCAGGTGCCCGCCTCCCAAGGCTCAGGCTGGGAAGCAGCA--GG-GGCTCGGGGAGCAGCTCAGTTTTGGGGAG-TAGCTAAGGCTGGGGAGCAACTGGGGTTTGGGGAGCAGCTGGGATTTGGGAGCA-GCTCGG-GCTGGGGAGCAGCTGGGGCTCAGGAGCAGGAGTGGGACCTGAGGGATCCTGTGCACCCCTACACCCACCCCCAAACCCCGCAGCAGAACAGAGCCCCGGGGACTCT--------GCCTTGGGTTCCCCTAC-----------------AGTGTAGCCCCAGGTCCCACAGG-GGCTAGAGTCAGCTCCTTTGGGATGGCTCCTCTGGGTA-----------------GCAAGTCCT-GGTGTCTGGAGGGGAC------------------ACCCCGTGCTCACAGGGCCCCCACCTGCCTGCCCCAGCTGCTGTTCCAGGAGAGCAACCCCGGAGTGCGCTACGAGTACACCATCCAAAGGGAGGCGGATGGTCAGGGCCAGGTCCAGCCACCTGAGTTCTTCTGGGACTATGGGCCCTGGACCACATGCACAGTCACGTGTGGTACAGGTGAGG
i canFam3.chr3                   I 1 C 0
s dasNov3.JH579681                  847009 1003 +   1727078 GGAGCCCAGCCAC-------------GTAGAGCTTTTCTGGGGTTTTGGTGACTTAGGACAGATCTAA-----GCA-------TCTTCTTGTGG-ATGGAGCTGAGAATCAAATGCCAGTGGTGAggggagtgggtgtagctcagtggttgaatgcctgcttcctgtgtccgtagtcctgggttcagtctccagtacctccttgaaaaaaaGCCAGTG--GTGTAATCTTCAGGGGCATCAGCAGGC-AGGAGCAGGTGG---AAGAGGGGAGAG-AGAGGGT-GGGGAAAGCCAGCCCTCTTAACCCCGA-----GGCCTCTGCACAAACCCCTCACCAACAGGCTACGTGGACGTGGGGCTGCTCCCGGCTGGCGCACGGGAGATCCGCATTGAAGAGGTGGCCGAGGCTGCCAACTTCTTGGCCCTGCGGAGCGAGCATCCTGATAAGTACTTCCTCAACGGTGGCTGGACCATCCAGTGGAACGGGGACTACCAGGTGGCAGGCACCACCTTCACATATGCCCGCTCAGGCAACTGGGAGAACCTCACGTCCCCGGGGCCCACCATGGAGCCTGTGTGGATCCAGGTGCCTGCCTCCCAAGCCCAGGGCGGGG--GTGGCACTCA-GAT----------------------GGGGTTCTCCAGACCC----AGCCCC-----------------------C---ACGGCAGGGCGTCAGGTCCAGAGGCAT--CATCCCTGGG-CACTCACGGAGTCT----GGCTCTGGG-----------------CCTAGCCTAACAG------------CTGGGG-ctct--------gcctcagtttccccatt-tctaaaatggCTTCATGATTTAGCTCCTGTACACAGAGGTACCTGGGGTTGGCTCCTACAGGATGGCCCCCCTGGGTG-----------------GCAGGTCCCAGGTGGATGGACAGGAT------------------ACCTTGTGCTCACGGGGCCCCCACCCGCCTGCCCCAGCTGCTGTTCCTGGAGAGCAACCCCGGTGTGCGCTACAAGTACACCATCCACAGGGAGGTGGATGGCCACGGCGAGGCCCAGCAGCCTGAGTTCTCCTGGCATTATGGGCCCTGGACTGAGTGCACAGTCACCTGTGGCACAGGTGAGA
i dasNov3.JH579681               C 0 C 0
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081    0 +  24206276 C
e macFas5.chr7                    61592994    0 + 171882078 C

a score=1729759.000000
s hg38.chr15_KI270850v1_alt          32774 245 +    430880 AGTGGGGCAGGCACAGCC-CCGCCagcaggggct-tcatctctggacagg--------------------------------------------------------------------------------------------gaca-ccggcttcagctcccagctca-ctg--------ctgggccaccatgggtttagaa-gtttgcttctctgagcctcagttc-cccatctgtgagatgaggctagcaaccgccccatgtcccaggcccactgggagggtaaatg-gatgaggcaggtg-ggtgc-tggctcgcggcgtgtgctcagtgtgct-gcagctctTGGCGTTCT
s panTro5.chr15                   59824275 244 +  83230942 AGTGGGGCAGGCACAGCC-CCACCagcacgggct-ttgtctctagacagg--------------------------------------------------------------------------------------------gaca-ctggcttcagctcccagctca-ctg--------ctgggctaccatgggtttggaa-gtttgcctctctgagcctcagttc-cccatctgtgagatgaggctagcgattg-cctgtgtcccaggcccgct-ggagggtagatg-gatgaggcaggtG-GGTGC-TGGCTCGCGGTGCGTGCTCAGTGTGCTCGCAGCTCTTGGTGTTCT
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059069 245 -  99763055 AGTGGGGCAGGCACAGCC-CCACCagcaggggct-tagtgtctggacagg--------------------------------------------------------------------------------------------gaca-ctggcttcagctcccagctca-ctg--------ctgggccaccacgggtttggaa-gtttgcttctctgagcctcagttc-tccatctgtgagatgaggctagcgattgccctgtgtcccaggcccgctgggagggtacatg-gatgaggcaggtg-ggtgc-tggctcgcggcgcgtgctcagtgtgct-gcagctctTGGCGTTCT
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326299 245 -    378907 AGTGGGGCAGGCACAGCC-CCGCCagcaggggct-tcatctctggacagg--------------------------------------------------------------------------------------------gaca-ctggcttcagctcccagctca-ctg--------ctgggccaccatgggtttagaa-gtttgcttctctgagcctcagttc-cccatctgtgagatgaggctagcaaccaccccatgccccaggcccactgggagggtaaatg-gatgaggcaggtG-GGTGC-TGGCTCGCGGCGTGTGCTCAGTGTGCT-GCAGCTCTTGGCGTTCT
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6373 245 -     28805 AGTGGGGCAGGCACAGCC-CCGCCagcaggggct-tcatctctggacagg--------------------------------------------------------------------------------------------gaca-ctggcttcagcttccagctca-ctg--------ctgggccaccatgggtttagaa-gtttgcttctctgagcctcagttc-cccatctgcgagataaggctagcaactgccccatgtcccaggcccactgggagggtaaatg-gatgaggcaggtG-GGTGC-TGGCTCGCGGCGCGTGCTCAGTGTGCT-CCAGCTCTTGGCATTCT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59993779 245 + 169600520 AGTGGGGCAGGCACAGCC-CCGGCGGCAGGGGCT-TCATCTctggacagg--------------------------------------------------------------------------------------------gacg-ctggcttcagcttccagctca-ctg--------ctgggccaccacgggtttggaa-gttggcttctctgagcctcagttc-cccatctgtgagatgaggctggcaactgccctatgtcccaggcccactgggagggtaaatg-gatgaggcaggtg-GGTGC-TGGCTCGCGGCGCGTGCTCAGTGTGCT-CCAGCTCTTGGTGTTCT
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3914924 245 +   4820037 AGTGGGGCAGGCACAGCC-CCGCCagcaggggct-tcgtctgtggacagg--------------------------------------------------------------------------------------------gacg-ctggcttcagcttccagctca-ctg--------ctgggccaccacgggtttggaa-gttggcttctctgagcctcagttc-cccatctgtgagatgaggctggcaaccgccccatgtcccaggcgcactgggagggtaaatg-gatgaggcaggtG-GGTGC-TGGCTCGTGGCACGTGCTCAGTGTGCT-CCAGCTCTTGGCGTTCT
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9777427 245 +  10730278 AGTGGGGCAGGCACAGCC-CCGCCagcagggact-tcgtctgaggacagg--------------------------------------------------------------------------------------------gacg-ctggcttcagcttccagctca-ctg--------ctgggccaccacgggtttggaa-gttggcttctctgagcctcagttc-cccatctgtgagatgaggctggcaaccgccccatgtcccaggcgcactgggagggtaaatg-gatgaggcaggtG-GGTGC-TGGCTCGTGGCGCGTGCTCAGTGTGCT-CCAGCTCTTGGCGTTGT
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4024829 245 +   5013933 AGTGGGGCAGGCACAGCC-TCGCCagcaggggct-ttgtctctgggcagg--------------------------------------------------------------------------------------------gacg-ctggcttcagcttccagctca-ctg--------ctgggccaccatgggtttggaa-gttggcttctctgagcctcagttc-cccatctgtgagatgaggctggcaactgccccgtgtcccaggcccactgggagggtaaatg-gatgaggcaggtG-GGTGC-TGGCTTGCGGCGCGTGCTCAGCGTGCT-CCAGCTCTTGGCGTTCT
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113745418 334 - 132174527 AGAGGGGCAGGCACAGCC-CCGCCAGCAGGGGCT-TTGGCTCTGGACAGGGATGCTGGCTTCAGCCTCCAGCTCACTGCTGGGCCACCACAAATCTGGACAGGGACGCtggcttgagctgggccaccacgggtttggacagagacg-ctggcttcagcctccagctca-ctg--------ctgggccaccacaggtctggag-gtttgcctttctgagcctcggttc-cccatc-gtgaaatgaggctggcaattgccccctgtctcatgcccgctggga-ggtaaata-gatgaggcaggtg-ggggc--agcttgtGGCGAGTGCTCAGTGTGCC-CCAGCTCTTGGTGTTCT
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   83788 242 -    125141 agaggggcaggcacagcc-ccgccagcaggggct-ttgactctggacagg--------------------------------------------------------------------------------------------gacg-ctggcttcagcctccagctca-ctg--------ctgggccaccacgggtctggag-gtttgcttctctgagcctcagttc-cccatc-gtgaaatgaggctggcaattgccccatgtcccatgcccgctggga-ggtaaata-gatgaggcaggtG-GGGGC--AGCATGCGGCAAGGGCTCAGTGTGCC-CCAGCTCTCAGCGTTCT
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             92670 243 +  11725426 AGAGAGGCAGGCAAAGCC-CCGCCagcaggggct-ttggctctgggcagg--------------------------------------------------------------------------------------------gaca-ctggcttcagcctccagctca-ctg--------ctgggccaccatgggtctggag-gtttgcttctctgagcctcagttc-cccatctgtgaaatgaggctggcaattgccccatgtcccatgcccactggga-ggtaaata-gatgaggcaggtG-GGGGC--AGCTTTCGGCGAATGCTCAGCGTGCC-CCAGCCCTTGGCGTTCT
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            685417 242 +    730879 agaggggcaggcacagcc-ccgccagcaggggct-ttggctctggacagg--------------------------------------------------------------------------------------------gacg-ctggcttcagcctccagctca-ctg--------ctgggccaccacgggtctggag-gtttgcttctctgagcctcagttc-cccatctgtgaaatgaggctggcacttgccccgtgtcccatgcccgctggga-ggtaaata-gatgaggcaGGCG-GGGGC--AGCTTGCGGCGAGTGCTCGGTGTG-C-CCAGCTCTTGGTGTTCT
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5782977 221 -  36342412 AGAGAGGCAGGCACAGTTGCTGCCAGCAAGGGCT-TTGTCTCTGAACAGG--------------------------------------------------------------------------------------------GAtg-ct--------------gcttatctg--------ccaggccactgtgggtttggaa-ctttgcttccctgagcctcagttc-cccatctgtaaaatggggctagtgatggtcctggctcataggtccacagggagggtagata-g--gaggaggtaC-AGTGT-GGGCATGTGGCGAGGGC-----------TCAGCTGCTGGTGTCCT
i otoGar3.GL873530               C 0 C 0
s canFam3.chr3                    58213979 238 +  91889043 AGAGGGGAGGGCACAGCCACTGCCCACCGGGGCCATCATCTCGGGGCAGC--------------------------------------------------------------------------------------------CATGCCTGGCTTCAGCCTCCA-CTCA-CTTTCCTATTCCTGGGCCACCGTGAGCTTGGAATGCTGGC--CTTTGGGTCCTGGAGT-CCCACT--GGGGGTGCTGCTGATGGCTG-----TGTCCC-----CACT-----GGTAGAGG-GATGAGGccggcacagtgcctggcacacag-gggtgctcggtaTGTC-TCAGCTGTTGGCACTCT
i canFam3.chr3                   C 0 I 528
s dasNov3.JH579681                  848012 240 +   1727078 GGAGGGGCGAGCACGGCT-GCTGCCCAATGGGCT-TTGTCTCTGGGCAGA--------------------------------------------------------------------------------------------AATG-CT-----CAGCTT-CAACCCc-tag--------ctgggctgccacgggcatggac-ctttgcttcttggagccttagtttgcccatccctccaatggaaacagtgataaccc---atctcaggtctgttgggaggttaaatgagacgaggcaggtaaagcacccagcaGGTGGTGAGCCCTCAGGATGTC-TCAGCTGTTCTCATCAT
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C

a score=213199.000000
s hg38.chr15_KI270850v1_alt          33019 45 +    430880 CCCTCCAGTG-GACACAGCTCCCCCTTGATTTTGTCCTTGCTCAGC
s panTro5.chr15                   59824519 43 +  83230942 -CCTTCAGGG-GACACAGCT-CCCCTCAATTTTGTCCTTGCTCAGT
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059314 29 -  99763055 CCCTCCAGGG-GACACAGCTCCCCCTCGAT----------------
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326544 44 -    378907 CCCTTCAGTG-GACACAGCT-CCCCTTGATTTTGTCCTTGCTCAGC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6618 45 -     28805 CCCTCCAGGG-GACACAGCTCCCCCTTGATTTAGTCCTTGCTCAGC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994024 45 + 169600520 CCCTCCAGCA-GACACAGCTCCCTCTCGATTGTGTCCTTGCTCACC
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915169 45 +   4820037 CCCTCCAGCA-GACACAGCTCCCTCTCGATTGTGTCCTTGCTCAGC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9777672 45 +  10730278 CCCTCCAGCG-GACACAGCTCCCTCTCGATTGTGTCTTTGCTCAGC
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025074 45 +   5013933 CCCTCTAGCG-GCCACAGCTCCCTCTCGATTGTGTCCTTGCTCAGC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113745752 45 - 132174527 CCCTCCAGCG-GGCACAGCTTCCTCTCGATTTTGTCCTGGCTCAGC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   84030 45 -    125141 CCATCCAGGG-GGCACAGCTCCCTCTCGATTTTGTCTTGGCTCAGC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             92913 45 +  11725426 CCCTCCAGGG-GGCACAGCTCCCTCTCAATTTTGTCCTGGCTCAGC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            685659 44 +    730879 CCATCCAG-G-GGCACAGCTCCCTCTCGATTTTGTCCTGGCTCAGC
i aotNan1.NW_018503093v1         C 0 I 253
s otoGar3.GL873530                 5783198 24 -  36342412 CCC------------------CCTC----TGTCCTCCCCACACAGT
i otoGar3.GL873530               C 0 C 0
s dasNov3.JH579681                  848252 40 +   1727078 CCCTCCAGAGAGGCACTGGC----CTTGGTGC--TCACTGCTCGGC
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e canFam3.chr3                    58214217 528 +  91889043 I
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C

a score=207385.000000
s hg38.chr15_KI270850v1_alt          33064 38 +    430880 TCCGGCAGGTTTTGT-GCCTGCA-TTTCT-GCT-GCGTCCCG
s panTro5.chr15                   59824562 42 +  83230942 TCTGGCAGGTCTTGTGGCCTGCATTTTCTCGCTGGCGTCCTG
i panTro5.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326588 38 -    378907 TCCGGCAGGTTTTGT-GCCTGCA-TTTCT-GCT-GCGTCCCG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6663 38 -     28805 TCTGGCAGGTCTTGT-GCCTGCA-TTTCT-GCT-GCGTCCTG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994069 38 + 169600520 TCTGGCAGGTCTTAT-GCTTGCA-TTTCT-GCT-GTGTCCCG
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915214 38 +   4820037 TCCAGCAGGTCTTGT-GCCTGCA-TTTCT-GCT-GCGTCCTG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9777717 38 +  10730278 TCCGGCAGGTCTTGT-GCCTGCA-TTTCT-GCT-GCGTCCTG
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025119 38 +   5013933 TTCGGCAGGTCTTGT-GCCTGCA-TTTCT-GCT-GCGTCCTG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113745797 38 - 132174527 TCTGGCAGGTCTCAT-GCCTGCA-TTTCT-GCT-CCGTCCTG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   84075 38 -    125141 TCCGGCAGGTCTCGT-GCCTGCA-TTTCT-GCT-GTGTCCTG
i saiBol1.JH378378               C 0 I 219
s cebCap1.NW_016107334v1             92958 38 +  11725426 TCCGGCAGGTCTCGT-GCCTGCA-TTTCT-GCT-GTGTCCTG
i cebCap1.NW_016107334v1         C 0 C 0
s otoGar3.GL873530                 5783222 38 -  36342412 GCTGATGGGTCTCAT-GTCTGCA-CTTCT-GCT-CCACCTTG
i otoGar3.GL873530               C 0 C 0
s dasNov3.JH579681                  848292 38 +   1727078 TCTGGCAGGTCTCGT-GCCTGCA-TCTCT-GCT-CCATGTTG
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            685703 253 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e canFam3.chr3                    58214217 528 +  91889043 I
e panPan2.chr15                   23059343  0 -  99763055 C
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C

a score=25550.000000
s hg38.chr15_KI270850v1_alt          33102 5 +    430880 GAGAC
s panTro5.chr15                   59824604 5 +  83230942 GAGAC
i panTro5.chr15                  C 0 I 1
s panPan2.chr15                   23059343 4 -  99763055 -AGAC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326626 5 -    378907 GAGAC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6701 5 -     28805 GAGAC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994107 5 + 169600520 GAGAC
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915252 5 +   4820037 GAGAC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9777755 5 +  10730278 GAGAC
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025157 5 +   5013933 GAGAC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113745835 5 - 132174527 GAGAC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   84332 5 -    125141 GAGGC
i saiBol1.JH378378               I 219 C 0
s cebCap1.NW_016107334v1             92996 5 +  11725426 GAGAC
i cebCap1.NW_016107334v1         C 0 I 275
s otoGar3.GL873530                 5783260 3 -  36342412 --GAC
i otoGar3.GL873530               C 0 I 1
s dasNov3.JH579681                  848330 1 +   1727078 --G--
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            685703 253 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e canFam3.chr3                    58214217 528 +  91889043 I
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081 0 +  24206276 C
e macFas5.chr7                    61592994 0 + 171882078 C

a score=18112.000000
s hg38.chr15_KI270850v1_alt          33107 7 +    430880 CAGCCCA
s panTro5.chr15                   59824610 7 +  83230942 CAGCCCA
i panTro5.chr15                  I 1 C 0
s panPan2.chr15                   23059347 7 -  99763055 CAGTCCA
i panPan2.chr15                  C 0 I 2
s gorGor5.CYUI01015946v1            326631 7 -    378907 CAGTCCA
i gorGor5.CYUI01015946v1         C 0 I 2
s nomLeu3.chr6_GL398151_2_random      6706 7 -     28805 CAGTCCA
i nomLeu3.chr6_GL398151_2_random C 0 I 2
s rheMac8.chr7                    59994112 7 + 169600520 CAGCCCA
i rheMac8.chr7                   C 0 I 2
s macNem1.NW_012011533v1           3915257 7 +   4820037 CAGTCCA
i macNem1.NW_012011533v1         C 0 I 2
s cerAty1.NW_011999477v1           9777760 7 +  10730278 CAGCCCA
i cerAty1.NW_011999477v1         C 0 I 2
s colAng1.NW_012114844v1           4025162 7 +   5013933 CAGTCCA
i colAng1.NW_012114844v1         C 0 I 2
s calJac3.chr10                  113745840 7 - 132174527 GACCCCA
i calJac3.chr10                  C 0 I 1334
s saiBol1.JH378378                   84337 7 -    125141 CAGCCCA
i saiBol1.JH378378               C 0 I 2
s otoGar3.GL873530                 5783264 3 -  36342412 ---CCT-
i otoGar3.GL873530               I 1 C 0
s dasNov3.JH579681                  848331 5 +   1727078 -GACTT-
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            685703 253 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93001 275 +  11725426 I
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081 0 +  24206276 C
e macFas5.chr7                    61592994 0 + 171882078 C

a score=62674.000000
s hg38.chr15_KI270850v1_alt          33114 14 +    430880 GGCCCCTCACCACA
s panTro5.chr15                   59824617 13 +  83230942 GG-CCCTCACCACA
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059356 14 -  99763055 GGCCCCTCACCACA
i panPan2.chr15                  I 2 C 0
s gorGor5.CYUI01015946v1            326640 14 -    378907 GGCCCCTCACCACG
i gorGor5.CYUI01015946v1         I 2 C 0
s nomLeu3.chr6_GL398151_2_random      6715 14 -     28805 GGCCCTTCACCACA
i nomLeu3.chr6_GL398151_2_random I 2 C 0
s rheMac8.chr7                    59994121 14 + 169600520 GTCCCCTCACCACC
i rheMac8.chr7                   I 2 C 0
s macNem1.NW_012011533v1           3915266 14 +   4820037 GGCCCCTCACCACG
i macNem1.NW_012011533v1         I 2 C 0
s cerAty1.NW_011999477v1           9777769 14 +  10730278 GGCCCCTCACCACC
i cerAty1.NW_011999477v1         I 2 C 0
s colAng1.NW_012114844v1           4025171 14 +   5013933 GGCCCCTCACCACC
i colAng1.NW_012114844v1         I 2 C 0
s saiBol1.JH378378                   84346 14 -    125141 GGCCCCTCACCATG
i saiBol1.JH378378               I 2 C 0
s aotNan1.NW_018503093v1            685956 14 +    730879 GGCCCCTCACCGTG
i aotNan1.NW_018503093v1         I 253 C 0
s otoGar3.GL873530                 5783267 14 -  36342412 GACCCCTACCCACA
i otoGar3.GL873530               C 0 I 208
s dasNov3.JH579681                  848336 14 +   1727078 GGCTGCTTCTTCCA
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93001 275 +  11725426 I
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C

a score=141452.000000
s hg38.chr15_KI270850v1_alt          33128 40 +    430880 CTGACTTATTTCCC-TGAACTATTTATGAAAAGTAGGGCAA
s panTro5.chr15                   59824630 40 +  83230942 CTGAC-TATTTCCCGTGAACTGTTTATAAAAAGTAGGGCAA
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059370 40 -  99763055 CTGACTTATTTCCC-TAAACTATTTATAAAAAGTAGGGCAA
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326654 40 -    378907 CTGACTTATTTCCC-TGAACTATTTATGAAAAGTAGGGCAA
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6729 37 -     28805 CTGACTTATTTCCC-TGAACTATTTATAAAA---AGGGCAA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994135 40 + 169600520 CTGACTTATTTCCC-TGAACTATTTGTAAAAAGCAGGGCAA
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915280 40 +   4820037 CTGACTTATTTCCC-TGAACTATTTGTAAAAAGTAGGGCAA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9777783 40 +  10730278 CTGACTTATTTCCC-TGAACTATTTGTAAAAAGTAGGGCAA
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025185 40 +   5013933 CTGACTTATTTCCC-TGAACTATTTATAAAAAGTAGGGCAA
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                   84360 38 -    125141 CCAACTTATTTCTT-TGAACTA--TATAAAAAGTATGATGG
i saiBol1.JH378378               C 0 C 0
s aotNan1.NW_018503093v1            685970 38 +    730879 CTGACTTATTTCTT-TGAACTA--TATAAAAAGTACGATGG
i aotNan1.NW_018503093v1         C 0 C 0
s dasNov3.JH579681                  848350 28 +   1727078 -TGGCC--TCACCC-GGAGGCAC---------GCAGGGTGG
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93001 275 +  11725426 I
e otoGar3.GL873530                 5783281 208 -  36342412 I
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C

a score=265734.000000
s hg38.chr15_KI270850v1_alt          33168 62 +    430880 TTTCATT-AACTCC-GACTCTTCCTCCCCATATTTCCCTCAGTCTCCCCC------CATGCTCCTCAGTC
s panTro5.chr15                   59824670 61 +  83230942 TTTCACTAAACTCCTGACTCTT-CTTCCCGTATTTCCCT--GTCTCCCCC------CATGCTCCTCAGTC
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059410 58 -  99763055 TTTCATT-AACTCT-GACTCTTCCTCCCCAAATTTCCCT----CTCTCCC------CATGCTCCTCAGTC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326694 62 -    378907 TTTCATT-AACTCC-GACTCTTCCTCCCCATATTTCCCTCAGTCTCCCCC------CATGCTCCTCAGTC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6766 60 -     28805 TTTCATT-AACTCT-GACTCTTCCTCACTGTATTTCCCT--GTCTCCCCC------TGTGCTCCTCAGTC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994175 60 + 169600520 TTTCATT-AACTCC-GACTCTTCCTCCCCATATTTATCT--ATCTCCCCC------CATGCTCCTCAGTC
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915320 62 +   4820037 TTTCTTT-AACTCC-GACTCTTCCTCCCCATATTTCTCTCAGTCTCCCCC------CATGCTCCTCAGTT
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9777823 62 +  10730278 TTTCTTT-AACTCC-GACTCTTCCTCCCCATATTTCCCTCAGTCTCCCCC------GATGCTCCTCAGTT
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025225 62 +   5013933 TTTCATT-AACTCC-GACTCTTCCTCCCCATATTTCCCTCAGTCTCCCCA------CATGCTCCTCAGTC
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                   84398 61 -    125141 TTTCATT-AACTCC-GACTCTTCCTCCCCATATTTCCCTTAGT-GCCCCC------CATGCCCCTCGATC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             93276 61 +  11725426 TTTCATT-AACTCC-GACTCTTCCTCCCCATATTTCCCTTAGT-GCCCCC------CGTGCCCCTCGGTC
i cebCap1.NW_016107334v1         I 275 C 0
s aotNan1.NW_018503093v1            686008 61 +    730879 TTTCATT-AACTCC-GACTCTTCCTCCCCATATTTCCCTTAGT-GCCCCC------CATGCCCCTCGGTC
i aotNan1.NW_018503093v1         C 0 I 742
s dasNov3.JH579681                  848378 46 +   1727078 -------------------CCTCCTTCCC-----TCCTCTAGCTCCTGCCTGGAGGTGGGCTGCTCAGGG
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e canFam3.chr3                    58214217 528 +  91889043 I
e otoGar3.GL873530                 5783281 208 -  36342412 I
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C

a score=-20049.000000
s hg38.chr15_KI270850v1_alt          33230 4 +    430880 --TC--CC
s panTro5.chr15                   59824731 6 +  83230942 --TCCACC
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059468 2 -  99763055 --CC----
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326756 2 -    378907 --TC----
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6826 4 -     28805 --CC--CT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994235 4 + 169600520 --CC--TG
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915382 4 +   4820037 --CC--TC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9777885 4 +  10730278 --CC--TC
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025287 3 +   5013933 --CC---C
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                   84459 2 -    125141 ------TC
i saiBol1.JH378378               C 0 I 1
s cebCap1.NW_016107334v1             93337 2 +  11725426 ------TC
i cebCap1.NW_016107334v1         C 0 I 475
s dasNov3.JH579681                  848424 4 +   1727078 GCTC----
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            686069 742 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e canFam3.chr3                    58214217 528 +  91889043 I
e otoGar3.GL873530                 5783281 208 -  36342412 I
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081 0 +  24206276 C
e macFas5.chr7                    61592994 0 + 171882078 C

a score=40605.000000
s hg38.chr15_KI270850v1_alt          33234 48 +    430880 CTCTCTGTCTCTTTG-TC-----------------------------------------TCCTCCCCACTGCTCCTCAGTCTCCCCTCTG
s panTro5.chr15                   59824737 49 +  83230942 CTCTCTGTCTCTTTGTTC-----------------------------------------CTCTCGCCACTGTTCCTCAGTCTCTGCTCTG
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059470 44 -  99763055 ----CTCTCTCTCTG-TC-----------------------------------------TCCTCCCCACTGCTCCTCAGTCTCCCCTCTG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326758  7 -    378907 -----------------------------------------------------------------------------------CCCTCTG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6830 46 -     28805 TTCTCTGTGTTTTTG-TC-----------------------------------------TCCTCCC--ATACTTCTCAGTCTCCCCTCTG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994239 44 + 169600520 CTC----TCTCTTTG-TC-----------------------------------------TCCTCCTCACTGCTCCTCGGCTTCCCCTCTA
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915386 89 +   4820037 CTCTCTGTCTCTTTG-TCTCCTCCCCACTGCTCCTCGATCTCCCCTCTGCCCCTCCGTGTCCTCCCCACTGCTCCTCGGCCTCCCCTCTG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9777889 89 +  10730278 CTCTCTGTCTCTTTG-TCTCCTCCCCACTGCTCCTCGATCTCCCCTCTGCCCCTCCGTGTCCTCCCCACTGCTCCTTGGCCTCCCCTCTG
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025290 48 +   5013933 CCCTCTGTCTCTTTG-TC-----------------------------------------TCCTCCCCACTGCTCCTCAGTCTCCTCTCTG
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                   84462 20 -    125141 --------------------------------------------------------------------CTGCCTCTCAGAATCCCCCC--
i saiBol1.JH378378               I 1 C 0
s dasNov3.JH579681                  848428 33 +   1727078 ---------------------------------------------------------CCTCCTCCCTGGAGCCCTTCAGCCCCTCCTAGG
i dasNov3.JH579681               C 0 I 201
e aotNan1.NW_018503093v1            686069 742 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93339 475 +  11725426 I
e otoGar3.GL873530                 5783281 208 -  36342412 I
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C

a score=77396.000000
s hg38.chr15_KI270850v1_alt          33282 29 +    430880 CCCC--TCCGTCTCCTCCCATACTCCTCAGT
s panTro5.chr15                   59824786 30 +  83230942 CCCCTTTCCGTCTCCCCCCATGCT-CTCAGT
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059514 29 -  99763055 CCCC--TCCGTCTCCTCCCATACTCCTCAGT
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326765 20 -    378907 CCCC--TCCGTCTCCTCCCATA---------
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6876 29 -     28805 CCTC--TCAGTCTCTTCCCATACCCCTCAGT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994283 29 + 169600520 CCCC--TCCATCTCCTCCCATACTTCTCAGT
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915475 29 +   4820037 CCCC--TCCGTCTCCTCCCATACTTCTCAGT
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9777978 29 +  10730278 CCCC--TCCGTCTCCTCCCATACTTCTCAGT
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025338 29 +   5013933 CCCC--TCCGTCTCCTCCCATACTTCTCAGT
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                   84482 29 -    125141 ACCT--CAGGTCTCCTGCCCTGCCCCTTGGT
i saiBol1.JH378378               C 0 C 0
e aotNan1.NW_018503093v1            686069 742 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e dasNov3.JH579681                  848461 201 +   1727078 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93339 475 +  11725426 I
e otoGar3.GL873530                 5783281 208 -  36342412 I
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C

a score=22724.000000
s hg38.chr15_KI270850v1_alt          33311 8 +    430880 CTCCCCCC
s panTro5.chr15                   59824816 8 +  83230942 CTCCCCCC
i panTro5.chr15                  C 0 I 41756
s panPan2.chr15                   23059543 7 -  99763055 CTCCCCC-
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6905 8 -     28805 CTCTTCCC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994312 8 + 169600520 CTCCCCCC
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915504 8 +   4820037 CTCCCCCA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778007 8 +  10730278 CTCCCCCC
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025367 8 +   5013933 CTCCCCCC
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                   84511 8 -    125141 CTTCCCCC
i saiBol1.JH378378               C 0 I 2
s otoGar3.GL873530                 5783489 8 -  36342412 CTCCCCAT
i otoGar3.GL873530               I 208 C 0
e aotNan1.NW_018503093v1            686069 742 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e dasNov3.JH579681                  848461 201 +   1727078 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93339 475 +  11725426 I
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081 0 +  24206276 C
e macFas5.chr7                    61592994 0 + 171882078 C
e gorGor5.CYUI01015946v1            326785 0 -    378907 C

a score=21166.000000
s hg38.chr15_KI270850v1_alt          33319 10 +    430880 -ATGCCTCTCA
s panTro5.chr15                   59866580 10 +  83230942 -ATGCCTCTCA
i panTro5.chr15                  I 41756 C 0
s panPan2.chr15                   23059550  8 -  99763055 -ATGCCTCT--
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326785  6 -    378907 -----CCCTCA
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6913 10 -     28805 -ATACCCCTCA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994320 10 + 169600520 -GTGCTCCTCA
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915512 10 +   4820037 -ATGCCCCTCA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778015 10 +  10730278 -ATACCCCTCA
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025375 10 +   5013933 -ATGCCCCTCA
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                   84521 10 -    125141 -ATGCCCCTCA
i saiBol1.JH378378               I 2 C 0
s otoGar3.GL873530                 5783497 10 -  36342412 AGTGCCCTTA-
i otoGar3.GL873530               C 0 C 0
e aotNan1.NW_018503093v1            686069 742 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e dasNov3.JH579681                  848461 201 +   1727078 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93339 475 +  11725426 I
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C

a score=29801.000000
s hg38.chr15_KI270850v1_alt          33329 8 +    430880 GTCTCCCC
s panTro5.chr15                   59866590 8 +  83230942 GTCTCCCC
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059558 8 -  99763055 GTCTCCCC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326791 8 -    378907 GTCTCCCC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6923 8 -     28805 GTCTCCCC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994330 8 + 169600520 GTCTCCCC
i rheMac8.chr7                   C 0 I 83
s macNem1.NW_012011533v1           3915522 8 +   4820037 ATCTTCCC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778025 8 +  10730278 ATCTCCCC
i cerAty1.NW_011999477v1         C 0 C 0
s saiBol1.JH378378                   84531 8 -    125141 GTTTCCCC
i saiBol1.JH378378               C 0 C 0
s otoGar3.GL873530                 5783507 8 -  36342412 GTCTTCCC
i otoGar3.GL873530               C 0 C 0
e aotNan1.NW_018503093v1            686069 742 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e dasNov3.JH579681                  848461 201 +   1727078 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93339 475 +  11725426 I
e colAng1.NW_012114844v1           4025385 0 +   5013933 C
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081 0 +  24206276 C
e macFas5.chr7                    61592994 0 + 171882078 C

a score=20246.000000
s hg38.chr15_KI270850v1_alt          33337 23 +    430880 CCATACCCCTCGGTCTCCCCCCA
s panTro5.chr15                   59866598 20 +  83230942 CCATAGCCCTCGGTCTCCCC---
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059566 20 -  99763055 CCATAGCCCTCGGTCTCCCC---
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326799 20 -    378907 CCATACCCCTCGGTCTGCCC---
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6931 23 -     28805 CCATACCCCTCAGTCTCCCCCCA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macNem1.NW_012011533v1           3915530 11 +   4820037 CCATGCCCCTC------------
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778033 11 +  10730278 CCATACCCCTC------------
i cerAty1.NW_011999477v1         C 0 C 0
s saiBol1.JH378378                   84539 21 -    125141 -CA-ACCCCTCAGTCTCCCCTCA
i saiBol1.JH378378               C 0 M 1007
s otoGar3.GL873530                 5783515 18 -  36342412 ---AGACCCTTGGTCTTCCCC--
i otoGar3.GL873530               C 0 C 0
e aotNan1.NW_018503093v1            686069 742 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e dasNov3.JH579681                  848461 201 +   1727078 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93339 475 +  11725426 I
e colAng1.NW_012114844v1           4025385  0 +   5013933 C
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C
e rheMac8.chr7                    59994338 83 + 169600520 I

a score=-7390.000000
s hg38.chr15_KI270850v1_alt          33360 28 +    430880 TACCCCTCGGTCTGCC-CCCATACCCCTC
s panTro5.chr15                   59866618  3 +  83230942 ----------------------ACC----
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059586  3 -  99763055 ----------------------ACC----
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326819 11 -    378907 ------------------CCATACCCCTC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6954 29 -     28805 TACCCCTCAGTCTCCCTCCCATTTCCCTC
i nomLeu3.chr6_GL398151_2_random C 0 T 21
s otoGar3.GL873530                 5783533 27 -  36342412 TGTCCCACAATATTCCCTCATGACCCT--
i otoGar3.GL873530               C 0 C 0
e aotNan1.NW_018503093v1            686069 742 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e dasNov3.JH579681                  848461 201 +   1727078 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93339 475 +  11725426 I
e colAng1.NW_012114844v1           4025385  0 +   5013933 C
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e cerAty1.NW_011999477v1           9778044  0 +  10730278 C
e macNem1.NW_012011533v1           3915541  0 +   4820037 C
e macFas5.chr7                    61592994  0 + 171882078 C
e rheMac8.chr7                    59994338 83 + 169600520 I
e saiBol1.JH378378                   84560 1007 -    125141 M

a score=14551.000000
s hg38.chr15_KI270850v1_alt          33388 32 +    430880 GGTCTCCCCCCAATATCCCTCAGTTTCCCTCC----------
s panTro5.chr15                   59866621 20 +  83230942 ------------ATATCCCTCGGTCTCCCTCC----------
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059589 20 -  99763055 ------------ATATCCCTCGGTCTCCCTCC----------
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326830 32 -    378907 GGTCTCCCCCCAATACCGCTCAGTTACCCTCC----------
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6962 32 -     28805 AGTCTCCCTCCCATTTCCCTCGGTCTCCCCCC----------
i nomLeu3.chr6_GL398151_2_random T 21 T 11
s macNem1.NW_012011533v1           3915541 11 +   4820037 ---------------------GGTCTCCCTCC----------
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778044 11 +  10730278 ---------------------GGTCTCCCTCC----------
i cerAty1.NW_011999477v1         C 0 C 0
s otoGar3.GL873530                 5783560 37 -  36342412 GGTCTCCCAC-----TGCCCCGATCTCTTCCCCTGTCGCTGT
i otoGar3.GL873530               C 0 C 0
e aotNan1.NW_018503093v1            686069 742 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e dasNov3.JH579681                  848461 201 +   1727078 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93339 475 +  11725426 I
e colAng1.NW_012114844v1           4025385  0 +   5013933 C
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C
e rheMac8.chr7                    59994338 83 + 169600520 I
e saiBol1.JH378378                   84560 1007 -    125141 M

a score=10817.000000
s hg38.chr15_KI270850v1_alt          33420 18 +    430880 GGCCCTCCAGTACCCCCG
s panTro5.chr15                   59866641 18 +  83230942 AGCCCTCCAGTACCCCCG
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059609 18 -  99763055 AGCCCTCCAGTACCCCCG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326862 17 -    378907 GGCCCTCCAGTCCCCCC-
i gorGor5.CYUI01015946v1         C 0 C 0
s macNem1.NW_012011533v1           3915552 16 +   4820037 TGTCCTCCAGTCCCGC--
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778055 16 +  10730278 TGTCCTCCAGTCCCAC--
i cerAty1.NW_011999477v1         C 0 C 0
s otoGar3.GL873530                 5783597 16 -  36342412 GTCCCTGTGGCTCCTG--
i otoGar3.GL873530               C 0 C 0
e aotNan1.NW_018503093v1            686069 742 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e dasNov3.JH579681                  848461 201 +   1727078 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93339 475 +  11725426 I
e colAng1.NW_012114844v1           4025385  0 +   5013933 C
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C
e rheMac8.chr7                    59994338 83 + 169600520 I
e nomLeu3.chr6_GL398151_2_random      6994 11 -     28805 T
e saiBol1.JH378378                   84560 1007 -    125141 M

a score=21734.000000
s hg38.chr15_KI270850v1_alt          33438 50 +    430880 CCACGCCCCTCAGTCTTCCTCCCCCGGCTCGGTCTCCCCCGCCATTCCTT
s panTro5.chr15                   59866659 50 +  83230942 CCACACCCCTCAGTCCTCCTCTCACAGCTCGGTCTCCCCCACCATTCCTT
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059627 50 -  99763055 CCACACCCCTCAGTCCTCCTCTCACAGCTCGGTCTCCCCCACCATTCCTT
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326879 35 -    378907 CGACGCCCCTTGGTCTTCCTCCCCCGGCTCGGTCT---------------
i gorGor5.CYUI01015946v1         C 0 C 0
s rheMac8.chr7                    59994421 31 + 169600520 CCACGCCTCTCAGTCTCCC-------------------CCGTTACCCCTT
i rheMac8.chr7                   I 83 C 0
s macNem1.NW_012011533v1           3915568 19 +   4820037 CCATGCCCCTCAGTCTTCC-------------------------------
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778071 19 +  10730278 CCATGCCCCTCAGTCTTCC-------------------------------
i cerAty1.NW_011999477v1         C 0 C 0
s otoGar3.GL873530                 5783613 48 -  36342412 CTCCGTCCTTGGGTGTCCA--CTCATTCCTGATCTCTTCCCTTCTTTCTG
i otoGar3.GL873530               C 0 C 0
e aotNan1.NW_018503093v1            686069 742 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e dasNov3.JH579681                  848461 201 +   1727078 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93339 475 +  11725426 I
e colAng1.NW_012114844v1           4025385  0 +   5013933 C
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C
e nomLeu3.chr6_GL398151_2_random      6994 11 -     28805 T
e saiBol1.JH378378                   84560 1007 -    125141 M

a score=1500.000000
s hg38.chr15_KI270850v1_alt          33488 1 +    430880 G
s panTro5.chr15                   59866709 1 +  83230942 G
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059677 1 -  99763055 G
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6983 1 -     28805 G
i nomLeu3.chr6_GL398151_2_random T 11 C 0
s rheMac8.chr7                    59994452 1 + 169600520 G
i rheMac8.chr7                   C 0 C 0
s otoGar3.GL873530                 5783661 1 -  36342412 G
i otoGar3.GL873530               C 0 C 0
e aotNan1.NW_018503093v1            686069 742 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e dasNov3.JH579681                  848461 201 +   1727078 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93339 475 +  11725426 I
e colAng1.NW_012114844v1           4025385 0 +   5013933 C
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081 0 +  24206276 C
e cerAty1.NW_011999477v1           9778090 0 +  10730278 C
e macNem1.NW_012011533v1           3915587 0 +   4820037 C
e macFas5.chr7                    61592994 0 + 171882078 C
e saiBol1.JH378378                   84560 1007 -    125141 M
e gorGor5.CYUI01015946v1            326914 0 -    378907 C

a score=21664.000000
s hg38.chr15_KI270850v1_alt          33489 10 +    430880 GTCTCCCCCC-
s panTro5.chr15                   59866710 10 +  83230942 GTCTCCCCCC-
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059678 10 -  99763055 GTCTCCCCCC-
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6984 10 -     28805 GTCTCCCCCC-
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994453 10 + 169600520 GTCTCCCCCA-
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915587  9 +   4820037 -TCTCCCCAC-
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778090  9 +  10730278 -TCTCCCCAC-
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025385 10 +   5013933 GTCTCCCTCC-
i colAng1.NW_012114844v1         C 0 C 0
s otoGar3.GL873530                 5783662 10 -  36342412 -TCTTCCTCCC
i otoGar3.GL873530               C 0 C 0
e aotNan1.NW_018503093v1            686069 742 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e dasNov3.JH579681                  848461 201 +   1727078 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93339 475 +  11725426 I
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C
e saiBol1.JH378378                   84560 1007 -    125141 M
e gorGor5.CYUI01015946v1            326914  0 -    378907 C

a score=58782.000000
s hg38.chr15_KI270850v1_alt          33499 78 +    430880 AGCCCCCCAGTCCCCCC-CGACGCCCCTTGGTCTTCCTCCC--CCTGCTCGGTCTGCCCTGCTGTTCCTCGATCTCCCCAC
s panTro5.chr15                   59866720 79 +  83230942 AGCCCCCTAGTCCCCCCTCCACGCCCCTCAGTCTTCCTCCC--CCTGCTTGGTCTCCCCTGCCGTTCCTTGATCTCCCCAC
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059688 79 -  99763055 AGCCCCCTAGTCCCCCCTCCACGCCCCTCGGTCTTCCTCCC--TCTGCTTGGTCTCCCCTGCCGTTCCTTGATCTCCCCAC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326914 25 -    378907 --------------------------------------------------------CCCTGCCGTTCCTTGATCTCCCCAC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      6994 30 -     28805 AGCTC---------------------------------------------------CCCAGCTGTTCCTTGGTCTCCCCAC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994463 75 + 169600520 C--CCCCCAGTCCCTC--CCATGCCCCTCAATCTTCCTCCC--CCCACTCAGTCTCCCCCGCCATTCCTCGGTCTCCCCAC
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915596 33 +   4820037 T------------------------------------------------CGGTCTCCCCCGTGGTTCCTTGGTCTCCCCAC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778099 33 +  10730278 T------------------------------------------------CGGTCTCCCCCGCCATTCCTTGGTCTCCCCAC
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025395 79 +   5013933 TGCCCTCCAGTCCCAC--CCATGCCCCTCGGTCTTCCTCTCCGCCTGCTCAGTCTCCCCCACCGTTCCTCGGTCTCCCCAC
i colAng1.NW_012114844v1         C 0 C 0
e aotNan1.NW_018503093v1            686069 742 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e dasNov3.JH579681                  848461 201 +   1727078 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93339 475 +  11725426 I
e otoGar3.GL873530                 5783672  0 -  36342412 C
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C
e saiBol1.JH378378                   84560 1007 -    125141 M

a score=19413.000000
s hg38.chr15_KI270850v1_alt          33577 5 +    430880 ACCTC
s panTro5.chr15                   59866799 5 +  83230942 ACCTC
i panTro5.chr15                  C 0 T 41878
s panPan2.chr15                   23059767 5 -  99763055 ACCTC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326939 5 -    378907 ACCTC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7024 5 -     28805 ACCTT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994538 5 + 169600520 ACCTC
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915629 5 +   4820037 ACCTC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778132 5 +  10730278 ACCTC
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025474 5 +   5013933 ACCTC
i colAng1.NW_012114844v1         C 0 C 0
s dasNov3.JH579681                  848662 5 +   1727078 ACCCC
i dasNov3.JH579681               I 201 C 0
e aotNan1.NW_018503093v1            686069 742 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93339 475 +  11725426 I
e otoGar3.GL873530                 5783672 0 -  36342412 C
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081 0 +  24206276 C
e macFas5.chr7                    61592994 0 + 171882078 C
e saiBol1.JH378378                   84560 1007 -    125141 M

a score=19593.000000
s hg38.chr15_KI270850v1_alt          33582 6 +    430880 ---AGTCTC
s panTro5.chr15                   59824926 6 +  83230942 ---AGTCTT
i panTro5.chr15                  T 41878 C 0
s panPan2.chr15                   23059772 6 -  99763055 ---AGTTTC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326944 6 -    378907 ---AGTCTC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7029 6 -     28805 ---AGTCTC
i nomLeu3.chr6_GL398151_2_random C 0 I 2
s rheMac8.chr7                    59994543 6 + 169600520 ---AGTCTC
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915634 6 +   4820037 ---AGTCTC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778137 6 +  10730278 ---AGTCTC
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025479 6 +   5013933 ---AGTCTC
i colAng1.NW_012114844v1         C 0 C 0
s dasNov3.JH579681                  848667 9 +   1727078 ACCTGTCCC
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            686069 742 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93339 475 +  11725426 I
e otoGar3.GL873530                 5783672 0 -  36342412 C
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081 0 +  24206276 C
e macFas5.chr7                    61592994 0 + 171882078 C
e saiBol1.JH378378                   84560 1007 -    125141 M

a score=7200.000000
s hg38.chr15_KI270850v1_alt          33588 2 +    430880 CC
s panTro5.chr15                   59824932 2 +  83230942 CC
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059778 2 -  99763055 CC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326950 2 -    378907 CC
i gorGor5.CYUI01015946v1         C 0 C 0
s rheMac8.chr7                    59994549 2 + 169600520 CC
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915640 2 +   4820037 CC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778143 2 +  10730278 CC
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025485 2 +   5013933 CC
i colAng1.NW_012114844v1         C 0 C 0
s dasNov3.JH579681                  848676 2 +   1727078 CC
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            686069 742 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93339 475 +  11725426 I
e otoGar3.GL873530                 5783672 0 -  36342412 C
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081 0 +  24206276 C
e macFas5.chr7                    61592994 0 + 171882078 C
e nomLeu3.chr6_GL398151_2_random      7035 2 -     28805 I
e saiBol1.JH378378                   84560 1007 -    125141 M

a score=17024.000000
s hg38.chr15_KI270850v1_alt          33590 6 +    430880 CCTTTG
s panTro5.chr15                   59824934 6 +  83230942 CCTTTG
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059780 6 -  99763055 CCTTTG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326952 6 -    378907 CCTTTG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7037 6 -     28805 CCTTTG
i nomLeu3.chr6_GL398151_2_random I 2 C 0
s rheMac8.chr7                    59994551 6 + 169600520 CCTTTG
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915642 6 +   4820037 GCTTTG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778145 6 +  10730278 ACTTTG
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025487 6 +   5013933 CTTTTG
i colAng1.NW_012114844v1         C 0 C 0
s dasNov3.JH579681                  848678 6 +   1727078 TCTCAG
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            686069 742 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93339 475 +  11725426 I
e otoGar3.GL873530                 5783672 0 -  36342412 C
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081 0 +  24206276 C
e macFas5.chr7                    61592994 0 + 171882078 C
e saiBol1.JH378378                   84560 1007 -    125141 M

a score=496205.000000
s hg38.chr15_KI270850v1_alt          33596 107 +    430880 TCTCTTAGTCCTCCC-CTTTCCCC-CTCAGTCTTCCCATCGTTGACACTCAGTA-TCCTCAGGGTC-TCAGAAT-CGGGAATCTGATATACA-GACGTTTGAGCATTCCTTCA
s panTro5.chr15                   59824940 110 +  83230942 TCTCTTAGTCTTCCCGCTTTTCCC-GTCAGTCTTCCCATCGTTGACACTCAGTAGTCCTCAGGGTC-TCAGAATGCGGGAATCTGAGATACc-gacatttgagcattccttca
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059786 107 -  99763055 TCTCTTAGTTCTCCC-CTTTTCCC-CTCAGTCTTCCCATTGTTGACACTCAGTA-TCCTCAGGGTC-TCAGAAT-CGGGAATCTGAGATACA-GACATttgagcattccttca
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            326958 106 -    378907 TCTCTTAGTCCTCC--CTTTCCCC-CTCAGTCTTCCCATCGTTGACACTCAGTA-TCCTCAGGGTC-TCAGAAT-CGGGAATCTGAGATACA-GACATttgagcattccttca
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7043 107 -     28805 TCTCTTAGTCCTCCC-CTTTTCCC-CTTAGTCTTTGCATCGTTGACACTCAGTA-TCCTCAGGGTC-TCAGAAT-CGGGAATCTGACATACA-GACATTTGAGCATTCCTTCA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994557 107 + 169600520 TCTCTTAGTCCTCC--CCTTTTCCTCTCGGTCTTCCCATCGTTGACACTCAGTG-TCCTCAGGGTC-TCAGGAT-CAGGAGTCTGAGATGCA-GACATttgagcattccttaa
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915648 106 +   4820037 TCCCTTAGTCCTCC--CTTTTTCC-CTCAGTCTTCCCATCGTTGACACTCAGTG-TCCTCAGGGTC-TCAGAAT-CGGGAATCTGAGATACA-GACATttgagcattccttaa
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778151 106 +  10730278 TCCCTTAGTCCTCC--CTTTTCCC-CTCAGTCTTCCCATCGTTGACACTCAGTG-TCCTCAGGGTC-TCAGAAT-TGGGAATCTGAGATACA-GACATttgagcattccttaa
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025493 106 +   5013933 TCTCTTAGTCCTCC--CTTTTCCC-CTCGGTCTTCCCATCGTTGACACTCAGTG-TCCTCAGGGTC-TCATAAT-CGGGAATCTGAGATACA-GACATttgtgcattccttaa
i colAng1.NW_012114844v1         C 0 C 0
s cebCap1.NW_016107334v1             93814 106 +  11725426 TCTCTTAGTCCTCC--CCTTTCCC-CTCAGTCTTTCCATCGTTGACACCCAGTG-TCCTCAGGGTC-TCAGAAT-CGGGAATCTGAGATAGA-GACATTTGAGCATTCCTTAA
i cebCap1.NW_016107334v1         I 475 C 0
s aotNan1.NW_018503093v1            686811 107 +    730879 TCTCTTAGTCCTCC--CCTTTCCC-CTCAGTCTTTCCATCGTTGACACCCGGTG-TCCTCAGGGTCGTCAGAAT-CGGGAATATGAGATAGA-GACATTTGAGCATTCATTAA
i aotNan1.NW_018503093v1         I 742 C 0
s dasNov3.JH579681                  848684 105 +   1727078 -CTCCCGTCTCCCTT-CTCTGTCC-CCCAGTCTCCCCGTC-TTGACCCTTGGTG-TCC-AGGGTTC-TCAGTGT-GAGGAATCTGAGACAAGCAACATTTGAACATTCCTTAA
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113745847 1334 - 132174527 I
e canFam3.chr3                    58214217 528 +  91889043 I
e otoGar3.GL873530                 5783672   0 -  36342412 C
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C
e saiBol1.JH378378                   84560 1007 -    125141 M

a score=59682.000000
s hg38.chr15_KI270850v1_alt          33703 9 +    430880 AATGCTATT
s panTro5.chr15                   59825050 9 +  83230942 aatgctatt
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059893 9 -  99763055 aatgctatt
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            327064 9 -    378907 aatgctatt
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7150 9 -     28805 ATTGTTATT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994664 9 + 169600520 aatgctatt
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915754 9 +   4820037 aatgctatt
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778257 9 +  10730278 aatgctatt
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025599 9 +   5013933 aatgctatt
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113747181 9 - 132174527 AATGCTGTT
i calJac3.chr10                  I 1334 C 0
s cebCap1.NW_016107334v1             93920 9 +  11725426 AATGCTATT
i cebCap1.NW_016107334v1         C 0 I 241
s aotNan1.NW_018503093v1            686918 9 +    730879 AATGCTATT
i aotNan1.NW_018503093v1         C 0 I 308
s dasNov3.JH579681                  848789 9 +   1727078 AATGCTATT
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e canFam3.chr3                    58214217 528 +  91889043 I
e otoGar3.GL873530                 5783672 0 -  36342412 C
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081 0 +  24206276 C
e macFas5.chr7                    61592994 0 + 171882078 C
e saiBol1.JH378378                   84560 1007 -    125141 M

a score=126440.000000
s hg38.chr15_KI270850v1_alt          33712 36 +    430880 ATGATGACAAAGTGAAAA-TGG-------AGAACTGGGCAGTTA
s panTro5.chr15                   59825059 36 +  83230942 atgatgacaaagtgaaac-tgg-------agaactgggcagata
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059902 36 -  99763055 atgatgaaaaagtgaaaa-tgg-------agaactgggcagata
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            327073 35 -    378907 atgatgacaaagtgaaaa-tgg-------agaact-ggcagata
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7159 36 -     28805 ATGATGACAAAATTAAAA-TGG-------AGAACTGGGCAGGTA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994673 36 + 169600520 atgatgacaaaacgaaaa-tgg-------agaactggacagata
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915763 36 +   4820037 atgatgacaaaacgaaaa-tgg-------agaactgggcagata
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778266 36 +  10730278 atgatgacaaaacgaaaa-tgg-------agaactgggcagata
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025608 36 +   5013933 atgatgacaaaatgaaaa-tgg-------agaacttggcagata
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113747190 37 - 132174527 ATGATGGCCACATGAGAACTGT-------GGAATTGGGTAGATG
i calJac3.chr10                  C 0 C 0
s dasNov3.JH579681                  848798 43 +   1727078 ATGACGACAAAATGAAAA-CTGTCCCATTAAAACTTTGCAGAAA
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            686927 308 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93929 241 +  11725426 I
e otoGar3.GL873530                 5783672  0 -  36342412 C
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C
e saiBol1.JH378378                   84560 1007 -    125141 M

a score=135293.000000
s hg38.chr15_KI270850v1_alt          33748 28 +    430880 CCTTCCAAAGCTAGGAAACCCATTTTAT
s panTro5.chr15                   59825095 27 +  83230942 ccttccaaagctag-aaacccattttat
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059938 28 -  99763055 ccttccaaagctaggaaacccattttat
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            327108 28 -    378907 ccttccaaagctaggaaacccattttat
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7195 28 -     28805 CCTTCCAAAGCTAGGAAACCCACTTTAT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994709 28 + 169600520 ccttccaaagctaggaaacccatgttat
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915799 28 +   4820037 ccttccaaagctaggaaacccatgttat
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778302 28 +  10730278 ccttccaaagctaggaaacccatgttat
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025644 28 +   5013933 ccttccaaagctaggaaacccatgttat
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113747227 27 - 132174527 CCTTCC-AAGCCAGGAAACCCATTTTAT
i calJac3.chr10                  C 0 C 0
s aotNan1.NW_018503093v1            687235 28 +    730879 CCTTCCAAAGCCAGGAAACCCGTTTTAT
i aotNan1.NW_018503093v1         I 308 C 0
s dasNov3.JH579681                  848841 28 +   1727078 TCTTCCAAAGCTATTCAAACTGTCGTAT
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93929 241 +  11725426 I
e otoGar3.GL873530                 5783672  0 -  36342412 C
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C
e saiBol1.JH378378                   84560 1007 -    125141 M

a score=64465.000000
s hg38.chr15_KI270850v1_alt          33776 34 +    430880 CTAATACAGCTGTC----------tttatttt-----attttat-----------tttgt
s panTro5.chr15                   59825122 22 +  83230942 ctaatacagctgtc----------tttattta----------------------------
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23059966 37 -  99763055 ctaatacagctgtc----------tttattttg--ctattttat-----------tttat
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            327136 39 -    378907 ctaatacAGCTGTC----------tttattttattttattttat-----------tttgt
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7223 50 -     28805 GTAATACAGCTGTC----------tttattttattttgttttattttattttaaatttat
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994737 39 + 169600520 ctaatacAGCTGTC----------tttattttattttattttat-----------tttat
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915827 49 +   4820037 ctaatacagctgtctttatttatttttattttattttattttat-----------tttat
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778330 18 +  10730278 ctaatacagctgtc----------ttta--------------------------------
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025672 18 +   5013933 ctaatacagctgtc----------ttta--------------------------------
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113747254 31 - 132174527 CTAATACAGCTAtc----------tttattttattttattt-------------------
i calJac3.chr10                  C 0 C 0
s aotNan1.NW_018503093v1            687263 31 +    730879 CTAATACAGCTAtc----------tttattttattttattt-------------------
i aotNan1.NW_018503093v1         C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e dasNov3.JH579681                  848869  0 +   1727078 C
e canFam3.chr3                    58214217 528 +  91889043 I
e cebCap1.NW_016107334v1             93929 241 +  11725426 I
e otoGar3.GL873530                 5783672  0 -  36342412 C
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C
e saiBol1.JH378378                   84560 1007 -    125141 M

a score=75023.000000
s hg38.chr15_KI270850v1_alt          33810 20 +    430880 tttattttattttattt----gag
s panTro5.chr15                   59825144 20 +  83230942 tttatttgattttattt----gag
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23060003 24 -  99763055 tttattttattttatttGttagag
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            327175 20 -    378907 tttattttgttttattt----GTg
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7273 20 -     28805 tttattttattttattt----gag
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994776 20 + 169600520 tttattttattttaCtt----gag
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915876 20 +   4820037 tttattttatttCACtt----gag
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778348 20 +  10730278 tttattttattttattt----gag
i cerAty1.NW_011999477v1         C 0 C 0
s colAng1.NW_012114844v1           4025690 20 +   5013933 tttattttattttattt----gag
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113747285 12 - 132174527 --------atttatttt----gag
i calJac3.chr10                  C 0 C 0
s cebCap1.NW_016107334v1             94170 20 +  11725426 tttattttatttatttt----gag
i cebCap1.NW_016107334v1         I 241 C 0
s aotNan1.NW_018503093v1            687294 12 +    730879 --------atttatttt----gag
i aotNan1.NW_018503093v1         C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e dasNov3.JH579681                  848869  0 +   1727078 C
e canFam3.chr3                    58214217 528 +  91889043 I
e otoGar3.GL873530                 5783672  0 -  36342412 C
e manLeu1.NW_012102632v1           3915485 4048 +   4030761 M
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C
e saiBol1.JH378378                   84560 1007 -    125141 M

a score=601732.000000
s hg38.chr15_KI270850v1_alt          33830 106 +    430880 atggagtctcactctgtcgcccaggctggagtgcag-tggcgcgatcttggctcactgcagcctccgcctcccaggttccagcaattctccttcctcagcctcccga
s panTro5.chr15                   59825164 107 +  83230942 atggagtcttgctctgttgcccaggctgcagtgcaaatggtgtgatctcagctcactgcagcttccgactctcaggttccagcagttctcctgcctcagcctcccga
i panTro5.chr15                  C 0 I 1
s panPan2.chr15                   23060027 106 -  99763055 atggagtctcactctgttgcccaggctggagtgcaa-tggcgcaatctcggctcactgcagcctccgcctcccaggctccagcgattctccttcctcagcctcccga
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            327195 106 -    378907 atggagtctcactctgtcgcccaggctggagtgcag-tggcgcgatcttggctcactgcagcctccgcctcccaggttccagcaattctccttcctcagcctcccga
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7293 106 -     28805 agggagtctcactctgtcgcccaggctagactgcaa-tggcgcaatctcggctcactgcagcctctgcctcccaaattccagtgattctccttcctcagcctcccga
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994796  95 + 169600520 atggagtctcactctgtcgcccagactggagtgcaa-tggtgcgatcttgg-----------ctccacctcccaggttccagtgattctcctgcctcaacctcctga
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915896  95 +   4820037 atggagtctcactctgtcgcccagactggagtgcaa-tggtgcgatcttgg-----------ctccacctcccaggttccagtgattctcctgcctcagcctcctga
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778368 106 +  10730278 atggagtctcaccctgtcgcccagactggagcgcaa-tggcatgatctcggctcacggcagcctccacctcccaggttccagtgattctcctgcctcagcctcctga
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3919533 106 +   4030761 atggagtctcaccctgtcgcccagactggagcgcaa-tggcatgatctcggctcacggcagcctccacctcccaggttccagtgattctcctgcctcagcctcctga
i manLeu1.NW_012102632v1         M 4048 C 0
s colAng1.NW_012114844v1           4025710 106 +   5013933 atggagtctcaccctgtcgcccagactggagctcaa-tggcacgatctcggctcacggcagcctccacctcccaggttccagtgattctcctgcctcagcctcctga
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113747297 106 - 132174527 acggagtcttgctctgtcacccaggctggagtgcag-tggtgtgatcttggctcacagcagcctctgcctcccaggttccattggttctcctgcctcagcctcccaa
i calJac3.chr10                  C 0 C 0
s cebCap1.NW_016107334v1             94190 106 +  11725426 acggagtcttgccctgtcacccaggctggagtgcag-tggtgcgatcttggctcgcagcagcctccgcctcccaggtcccattggttctcctgcctcagcctcctga
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            687306 106 +    730879 acggagtcttgctctgtcacccaggctgaagtgcag-tggtgcgatcttggctcacggcagactctgcctcccaggttccatcgattcttctgctccagccaaccga
i aotNan1.NW_018503093v1         C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e dasNov3.JH579681                  848869   0 +   1727078 C
e canFam3.chr3                    58214217 528 +  91889043 I
e otoGar3.GL873530                 5783672   0 -  36342412 C
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C
e saiBol1.JH378378                   84560 1007 -    125141 M

a score=1113237.000000
s hg38.chr15_KI270850v1_alt          33936 172 +    430880 gtagctgggatttacaggca-cgcaccaccatgcctggctaattttt---tattagtggtagagatggggtttcaccatgttggccaggctggtcttgaac-tgctgacctcaggtgattcgcccgccttggcctcccatagtgctg----ggattacaggcgtgagccactgtgcctggc
s panTro5.chr15                   59825272 173 +  83230942 gta-ctgggatttacaggcatcccgccaccatgcctggctaattttt--gtattattagtggagacagggtttcaccatgttggccgggctggtctcgaacgtcctgatgtcaggtgattcgccagccttgcattcccata-tgctg----ggattacaggcgtgagccactgtgcctggc
i panTro5.chr15                  I 1 C 0
s panPan2.chr15                   23060133 173 -  99763055 gtagctgggatttacaggca-tgcaccaccatgcccggctaattttt--ttattattagtagagatggggtttcaccatgttggccaggctggtcttgaac-tcctgacctcaggtgatttgcccgccttggcttcccatagtgctg----ggattacaggtgtgagccactgcccctggc
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            327301 171 -    378907 gtagctgggatttacaggca-cgcaccaccatgcctggctaattttt---tattagtggtagaggtggggtttcaccatgttggccaggctggtcttgaac-tgctgacctcaggtgattcgcccgccttggcctcccatagtgct-----ggattacaggtgtgagccactgtgcctggc
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7399 172 -     28805 gtagctgggatttacaggca-cgtgccaccatgcccagctaattttt---tgttattagtagagatggagtttcaccatgttggccaggctggtcttgaac-tcctgttctcaggtgattcgcctgcctcggcctcccatggtgctg----ggattacaggcgtgagccactgcgcctggc
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59994891 172 + 169600520 gtagctgggatttacagaca-cgcgcaaccatgcccggctaattctt---cattattggtagagatggggtttcaccatgttggccaggctggtctcgaac-tcctgacctcaggtgattcatcctcctcggcctcccatagtgctg----ggattacaggcgtgaaccaccgcgcctggc
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3915991 171 +   4820037 gtagctgagattaacaggaa-tgcgccaccatgcctggctaatt-ta---tattattagtagagatggggtttcaccatgttggccagactggtcttgaat-tcctgacctcaggtgattcgcccgcctcggcctcccatagtgctg----ggattacaggcgtgaaccaccgcgcctggc
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778474 171 +  10730278 gtagctgagattaacaggaa-tgcgccaccatgcctggctaatt-ta---tattattagtagagatggggtttcaccatgttggccagactggtcttgaac-tcctgacctcaggtgattcgcccgcctcggcctcccatagtgccg----ggattacaggcgtgaaccaccgcgcctggc
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3919639 171 +   4030761 gtagctgagattaacaggaa-tgcgccaccatgcctggctaatt-ta---tattattagtagagatggggtttcaccatgttggccagactggtcttgaat-tcctgacctcaggtgattcgcccgcctcggcctcccatagtgctg----ggattacaggcgtgaaccaccgcgcctggc
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4025816 166 +   5013933 gtagctgggatttacaggaa-cgcgccaccatgcctggctaatt-ta---tattgttagtagagatggggtttcaccatgttggccagactggtcttgaac-tcctgacctcaggtgatttgcccgccttggcctcccatagtgttg----gg-----aggcgtgagccactgcgcctggc
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113747403 176 - 132174527 gtagttgggatttacaggca-tgcaccaccatgcctggctaattttt---tatttttggtagaggtggggtttcatcatgttggccaggctcgtcttgaac-tcctgacctcaggtgattcacctgactcagcctcccaaagcgctgtaattgattacaggtgtgagccactgcacctggc
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   85570 172 -    125141 gtagctggga-ttacaggca-cgtgccaccatgcccagctaatttttttgtatttttagtagagacggggtttcaccatgttgactaggatggtctccatc-tcttgatctc--gtgatccacccgcctcggcctcccaaagtactg----ggattacaggcttgagccaccgtgcccggc
i saiBol1.JH378378               M 1007 C 0
s cebCap1.NW_016107334v1             94296 176 +  11725426 gtagttggggtttacaggca-tgcgccaccatgcctggttaattttt---tattattggtagaggcggggtttcaacatgttggccaggctggtcttgaac-tcctgacctcaggtgattcacctgactgagcctcccaaagcgctgggattgattgcaggcatgagccactgcacctggc
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            687412 176 +    730879 gtagttgggatttacaggca-tgcgccaccatgcctggctgattttt---cattatcggcagaggtggggtttcaccacgttggccaggctggtcttgaac-tcctgacctcaggtgatccgccctcctcgggctcccaaagcactgggattgattgcaggcgtgagccaccgcacctggc
i aotNan1.NW_018503093v1         C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e dasNov3.JH579681                  848869   0 +   1727078 C
e canFam3.chr3                    58214217 528 +  91889043 I
e otoGar3.GL873530                 5783672   0 -  36342412 C
e chlSab2.chr29                    1321081   0 +  24206276 C
e macFas5.chr7                    61592994   0 + 171882078 C

a score=43133.000000
s hg38.chr15_KI270850v1_alt          34108  9 +    430880 cTAATA-CAG
s panTro5.chr15                   59825445 10 +  83230942 ctaacaacgg
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23060306  9 -  99763055 ctaata-cag
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            327472  9 -    378907 cTAATA-CAG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7571  9 -     28805 cTAATA-CAG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59995063  9 + 169600520 cTAACA-CAG
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3916162  9 +   4820037 ctaaca-cag
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778645  9 +  10730278 ctaaca-cat
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3919810  9 +   4030761 cTAACA-CAT
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4025982  9 +   5013933 ctaaca-cag
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113747579  9 - 132174527 ATAATT-CAG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   85742  8 -    125141 -cAATT-CAG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             94472  9 +  11725426 ataatt-ctg
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            687588  9 +    730879 ATAATT-CAG
i aotNan1.NW_018503093v1         C 0 C 0
s dasNov3.JH579681                  848869  9 +   1727078 CCAATA-CAA
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e canFam3.chr3                    58214217 528 +  91889043 I
e otoGar3.GL873530                 5783672  0 -  36342412 C
e chlSab2.chr29                    1321081  0 +  24206276 C
e macFas5.chr7                    61592994  0 + 171882078 C

a score=10035.000000
s hg38.chr15_KI270850v1_alt          34117 1 +    430880 G
s panTro5.chr15                   59825455 1 +  83230942 g
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23060315 1 -  99763055 g
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            327481 1 -    378907 G
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7580 1 -     28805 G
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59995072 1 + 169600520 G
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3916171 1 +   4820037 g
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778654 1 +  10730278 g
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3919819 1 +   4030761 G
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4025991 1 +   5013933 g
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113747588 1 - 132174527 G
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   85750 1 -    125141 G
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             94481 1 +  11725426 g
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            687597 1 +    730879 G
i aotNan1.NW_018503093v1         C 0 C 0
s canFam3.chr3                    58214745 1 +  91889043 G
i canFam3.chr3                   I 528 C 0
s dasNov3.JH579681                  848878 1 +   1727078 A
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e otoGar3.GL873530                 5783672 0 -  36342412 C
e chlSab2.chr29                    1321081 0 +  24206276 C
e macFas5.chr7                    61592994 0 + 171882078 C

a score=10424.000000
s hg38.chr15_KI270850v1_alt          34118 1 +    430880 T
s panTro5.chr15                   59825456 1 +  83230942 t
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23060316 1 -  99763055 t
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            327482 1 -    378907 T
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7581 1 -     28805 T
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59995073 1 + 169600520 T
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3916172 1 +   4820037 t
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778655 1 +  10730278 t
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3919820 1 +   4030761 T
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4025992 1 +   5013933 t
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113747589 1 - 132174527 T
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   85751 1 -    125141 T
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             94482 1 +  11725426 t
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            687598 1 +    730879 T
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5783672 1 -  36342412 T
i otoGar3.GL873530               C 0 C 0
s canFam3.chr3                    58214746 1 +  91889043 C
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  848879 1 +   1727078 T
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e chlSab2.chr29                    1321081 0 +  24206276 C
e macFas5.chr7                    61592994 0 + 171882078 C

a score=3731429.000000
s hg38.chr15_KI270850v1_alt          34119 397 +    430880 GTCTTTAATTGGACAAACGTGA-AAACCAACAAATACATTTGCAGCACTAGACATTTGGGGAATTGCCTTTCAGCAAATTGGCTGCTTCGCAGGTGGACCACTTAGGAGCGTCTG-CAGAGGCAAGTGC---------CCTG-----TGGTGGCTGGAAGAGACAGGGGTTC-TTTGTCTCAGGCAGGAAG--TCCCAG-GTGCACAGTCC-AAGCTGGCGGGA-----------------------CCTGGAGCTGACTGGCCCTCAGCCACA-CCATCCTTGCCATAGCA-GCCTCC--CCT-------------CCACTCCTGCTTGCC-ac-agatggtgtcctcccttccagggctcttgcagtgttctaggcaagaa---ggagagagGAAAGGGCTGA---------------------CTCCCA-GCGAGGGACTTGTG--CCTTTTTCTCCTGAGCCAGGACTGTGTCCCAGACCCC-C
s panTro5.chr15                   59825457 402 +  83230942 gtctttaaatggacaaacttga-aaaccaacaaatacatttgcagcactagacatttggggaattgtctttcagcaa-ttggctGCTTTGCAGGTGGACCACTTGGGAGCATCTGGCAGAGGCAAGTGC---------CCTG-----TGGTGGCTGGAACAGACAGGGGTTC-TTTGTCTCAGGCAGGAAG--TCCGAG-GTGCACAGTCCTAAGCTGGTGGGA-----------------------CCTGGAACTGACTG-CCCTCAGCCACAACCGTCCTTGGCACAGCA-GCCTCCGCCTT-------------CCACTCCTGCTTGCCGAC-AGATGGTGTCCTCCCCTTCCAGGCTCTTGCAGTGTTCT-GGCAGGAA-AAGGAGAGGGGAAAGGGCTGA---------------------CTCCCA-GCGAGGGACTTGTGGGCCTTTTTCTCCCAAGCCAGGACTGT--CCCAGACCCC-C
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23060317 400 -  99763055 gtctttaattggacaaacttga-aaaccaacaaatacacttgcagcactagacatttggggaattgtctttcagcaaattggctGCTTCGCAGGTGGACCACTTAGGAGCGTCTG-CAGAGGCAAGTGC---------CCTG-----TGGTGGCTGGAACAGACAGGGGTTC-TTTGTCTCAGGCAGGAAG--TCCCAG-GTGCACAGTCT-AAGCTGGCGGGA-----------------------CCTGGAGCTGACTGGCCCTCAGCCGCA-CCGTCCTTGTCACAGCA-GCCTCC--CCT-------------CCACTCCTGCTTGCC-AC-AGATGGTGTCCTCCCTTCCAGGGCTCTTGCAGTGTTCTGGGCAGGAAGAAGGAGAGGGGAAAGGGCTGA---------------------CTCCCA-GCGAGGGACTTGTG--CCTTTTTCTCCCGAGCCAGGACTGTGTCCCAGACCCC-C
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            327483 396 -    378907 GTCTTTAATTGGACAAACGTGA-AAACCAACAAATACATTTGCAGCGCTAGACATTTGGGGAATTGTCTTTCAGCAAATTGGCTGCTTTGCAGGTGGACCACTTAGGAGCGTCTG-CAGAGGCAAGTGC---------CCTG-----T-GTGGCTGGAACAGACAGGGGTTC-TTTGTCTCAGGCAGGAAG--TCCCAG-GTGCACAGTCC-AAGCTGGCGGGA-----------------------CCTGGAGCTGACTGGCCCTCAGCCACA-CCATCCTTGCCATAGCA-GCCTCC--CCT-------------CCACTCCTGCTTGCC-AC-AGATGGTGTCCTCCCTTCCAGGGCTCTCGCAGTGTCCTAGGCAAGAA---GGAGAGAGGAAAGGGCTGA---------------------CTCCCA-GCGAGGGACTTGTG--CCTTTTTCTCCTGAGCCAGGACTGTGTCCCAGACCCC-C
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7582 400 -     28805 GTCTTTAATTGGACAAACGTGA-AAACCAACAAATACATTTGCAGCACTAGACATTTGGGGAACTGTCCTTCAGCAAATTGGCTGCTTCGCAGTTGGACCTCTTGGGATCATCTG-CAGAGGCAAGTGC---------CCCA-----TGGTGGCTGGAACAGACAGGGGTTC-TTTGTCTCAGGCAGGAAG--TCCCAG-GTGCACAGTCC-AAGCTGGCGGGA-----------------------CCTGGAGCTGACTGGCCCTCAGCCACA-CCGTCCTTGCCATAGCA-GCCTCC--CCT-------------CCACTCCTGCTTGCC-AC-AGATGGTGTCCTCCCTTCCAGGGCTCTTGCAGTGTTCTGGGCAGGAAGAAGGAGAGGGGAAAGGGCTGA---------------------CTCCCA-GTGAGGGGCTTGTG--TCTTTTTCTCCCGAGCCAGGACTGTGTCCCAGACCCT-C
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59995074 397 + 169600520 GTCTTTAATTGGACAAACATGA-AAACCAACACATACatttacagcactagacattcggggaattgtctttcagcaaattggcTGCTTCGCAGGTGGACCACTTGGGAGTGTCTG-CAGAGGCAAGTGT---------CCCA-----TGGTGGCTGGAACAGACAGGGGTTC-TTTGTCTAGGGCAGGAAG--TCCCAG-GTGCACAGTCC-AAGCTGGCGGGA-----------------------TCTGGAGCTGACTGGCCCTCAGCCACA-CTGTCCTTGCCACAGCA-GCCTCC--CCT-------------ACACTCCTGCTTGTC-AC-AGATGGTTTCCTCCCTTCCAGGGCTCTTATCCTGTACTGGGCAGGAAG---GAGAGGGGAAAGGGCTGA---------------------CTCCTA-GTGAGGGACTTGTG--CCTTTTTCTCCCCAGCCAGGACTGTGTCCCAAACCCC-C
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61592994 398 + 171882078 gtcTTTAATTGGACAAACGTGA-AAAACAGCACATACATTTGCAGGATTAGACATTT-GGGAATTGTCTTTCAGCAAATTGGCTGCTTCGCAGGGGGACCACTTAGGAGTGTCTG-CAGAGGCAAGTGC---------CCCA-----TGGTGACTGGAACAGACAGGGGTTC-TTTGTCTCAGGCAGGAAG--TCCCAG-GTGCACAGTCC-AAGGTGGCAGGA-----------------------CCTGGAGCTGATTGGCCCTCAGTCACA-CCATCCTTGCCACAGCA-GCCTCC--CCT--------------CACTCCTGCTTGTC-AC-AGATGCTGTCCTCCCTTCCAGGGCTCTTACCCTGTACCGGGCAGGAAGAAAGAGAGGGGAAAGGGCTGA---------------------CTCCCA-GTGAGGGACTCGTG--CCTTTTTCTCCCCAGCCAGGACTGTGTCCCAAACCCC-C
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3916173 400 +   4820037 gtctttaattggacaaacgtgg-aaaccaatacatacatttgcagcactagacatttggggaattgtctttcagcaaattggctGCTTCGCAGGTGGACCACTTGGGAGTGTCTG-CAGAGGCAAGTGC---------CCCG-----TGGTGGCTGGAACAGACAGGGGTTC-TTTGTCTCAGGCAGGCAG--TTCCAG-GTGCACAGTCC-AAGCTGGCGGGA-----------------------TCTGAAGCTGACTGGCCCTCAGCCACA-CTGTCCTTGCCACAGCA-GCCTCC--CCT-------------ACACTCCTGCTTGTC-AC-AGATGGTGTCCTCCCTTCCAGGGCTCTTACTGTGTACCGGGCAGGAAGAAGGAGAGGGGAAAGGGCTGA---------------------CTCCCA-GCAAGGGACTTGTG--CCTTTTTCTCCCCAGCCAGGACTGTGTCCCAGACCCC-T
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9778656 399 +  10730278 gtctttaattggacaaatgtgg-aaaccaacacatacatttgcagcactagacatttggggaattgtctttcagcaaattggctGCGTCGCAGGTGGACCACTTGGGAGTGTCTG-CAGGGGCAAGTGC---------CCCG-----TGGTGGCTAGAACAGACAGGGGTTC-TTTGTCTCAGGCAGGAAG--TTCCAG-ATGCACAGTCC-AAGCTGGCGGGA-----------------------TCTGAAGCTGACTGGCCCTCAGCCACA-CTGTCCTTGCCACAGCA-GCCTCC--CCT--------------CACTCCTGCTTGTC-AC-AGATGGTGTCCTCCCTTCCAGGGCTCTTACCGTGTACCAGGCAGGAAGAAGGAGAGGGGAAAGGGCTGA---------------------CTCCCA-GCAAGGGACTTGTG--CCTTTTTCTCCCCAGCCAGGACTGTGTCCCAGACCCC-T
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1321081 398 +  24206276 gtcTTTAATTGGACAAACGTGA-AAAACAGCACATACATTTGCAGGATTAGACATTT-GGGAATTGTCTTTCAGCAAATTGGCTGCTTCACAGGGGGACCACTTAGGAGTGTCTG-CAGAGGCAAGTGC---------CCCA-----TGGTAGCTGGAACAGACAGGGGTTC-TTTGCCTCAGGCAGGAAG--TCCCAG-GTGCACAGTCC-AAGGTGGCAGGA-----------------------CCTGGAGCTGATTGGCCCTCAGCCACA-CCATCCTTGCCACAGCA-GCCTCC--CCT--------------CACTCCTGCTTGTC-AC-AGATGCTGTCCTCCCTTCCAGGGCTCTTACCCTGTACCGGGCAGGAAAAAAGAGAGGGGAAAGGGCTGA---------------------CTCCCA-GTGAGGGACTCGTG--CCTTTTACTCCCCAGCCAGGACTGTGTCCCAAACCCC-C
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3919821 400 +   4030761 GTCTTTAATTGGACAAATGTGG-AAACCAACACATACATTTGCAGCACTAGACATTTGGGGAATTGTCTTTCAGCAAATTGGCTGCTTCGCAGGTGGACCACTTGGGAGTGTCTG-CAGGGGCAAGTGC---------CCCG-----TGGTGGCTAGAACAGACAGGGGTTC-TTTGTCTCAGGCAGGAAG--TTCCAG-ATGCACAGTCC-AAGCTGGCGGGA-----------------------TCTGAAGCTGACTGGCCCTCAGCCACA-CTGTCCTTGCCACAGCA-GCCTCC--CCT-------------ACACTCCTGCTTGTC-AC-AGATGGTGTCCTCCCTTCCAGGGCTCTTACCGTGGACCGGGCAGGAAGAAGGAGAGGGGAAAGGGCTGA---------------------CTCCCA-GCAAGGGACTTGTG--CCTTTTTCTCCCCAGCCAGGACTGTGTCCCAGACCCC-T
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4025993 400 +   5013933 gtctttaattggacaaacgtgg-aaaccaacacatacatttgcagcactagacatttggggaattgtctttcagcaaattggctGCTTCGCAGGTGGACCACTTGGGAGTGTCTG-CAGAGGCAAGTGC---------CCCG-----TGGTGGCTGGAACAGACAGGGGTTC-TTTGTCTCAGGCAGGAAG--TCCCAG-ATGCACAGTCC-AAGCTGGCGGGA-----------------------CCTGGAACTGACTGGCCGTCAGCCACA-CTGTCCTTGCCACAGCA-GCCTCC--CCT-------------ACACTCCTGCTTGTC-AC-AGATGGTGTCCTCCCTTCCAGGGCTCTTACCGTGTACCGGGCAGGAAGAAGGAGAGGGGAAAGGGTTGA---------------------CTCCCA-GCAGGGGACTTGTG--CCTTTTTCTCCCCAGCCAGGACTGTGTCCCAGACCCC-C
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113747590 412 - 132174527 GTCTCTAAATAGACAAACGTGAGAAACCAACAAATACATTTGCAGCACGAGACATTTGGG-GATTGTCTTTCAGCAAATCGGCTGCCTCAAAGGTGGACCGTGTAGGAGTGTACG-CAGAGGCAAGTGG---------CCCG-----CGGTGGCCAGGACAGACAGGGGTTC--TTGTCTAAGGCAGGAAG--ACCCAG-GTGCACAGTCC-AAGCTGGCGGGA-----------------------CCTGAAGCTGACTGTCCCTCAGCTGCA-GCGTCCTTGCCACTGCA-GCCCTC--CC-----------------CTCCTGCTTGTC-AC-AGATGGCATCCTCCCTTCCAGGCCTCTTGCCATGTTCCGGGCA-GAAGAAG--GAGGGGAAAGGGCTGAGGAGGAGGAGCTCATGTCCATTTCCCA-GCGAGGAGCTCCTG--TCCATTTCTCCCCAGCCAGGACTGTGTCCCAGAGCCC--
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   85752 378 -    125141 GTCTTTAAATAGACAAACGTGAGAAACCAACAAATACATGTGCAGCACGAGACATTTGGGAGATTGTCTCTCAGCAAATCGGCTGCCTTGAAGGTGGACCGTGTAGGAGTGTACG-CAGAGGCAAATGC---------CCCG-----TGGTGGCCGGGACAGAC-----------------AGGCAGGAAG--TCCCAG-GTGCACAGTCC-AAGCTGGCGGGA-----------------------CCTGGAGCTGACTGTCCCTCAGCTGCA-GCATCCTTGCCACGGCA-GCCCTC--CC-----------------CTCCTGCTTATC-AC-AGATGGCATCCTCCCTTCCAGGCCTCTTGCCATGTTCCGGGCAGGAAGAAG--AAGGGGAAAGGGCTGA---------------------CCCCCA-GCAAGGGACTTGTG--CCTGTTTCTCCCCAGCCAGGACTGTGTCCCAGAAACC--
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             94483 379 +  11725426 gtctttaaatagacaaacatgagaaaccaacagatacatgtgcagcacgagacatttgggggattgtctttcagcaaatcagctgtcTCGCAGGTGGACCGTGTAGGAGTGTACG-CAGAGGCAAGTGC---------CCCG-----CGGTGACGGGGACAGAC-----------------AAGCAGGAAG--TCCCAG-GGGCACAGTCC-AAGCTGGCGGGA-----------------------CCTGGAGCTGACTGTCACTCAGCTGCA-GCGTACTTGCCACGGCA-GCCCTC--CC-----------------CTCCTGCTTGTC-AC-AGATGGCATCCTCCCTTCCAGGCCTCTTGCCATGTTCTGGGCAGGAAGTAG--GAGGGGAAAGGGCTGA---------------------CTCCCA-GCGAGGGTCTCGTG--CCTGTTTCTCCCCAGCCAGGACTGTGTCCCAGAAACCC-
i cebCap1.NW_016107334v1         C 0 I 28
s aotNan1.NW_018503093v1            687599 350 +    730879 GTCTTTAAATAGACAAACGTGAGAAACCAGCAAATACACTTGCAGCACGAGACATTTGGGGGACTGTCTTCCAGCAAATCGGCTGCCTCGCAGGTGGACCGTGTAGGGGTGTACG-CAGAGGCAAGTGC---------CCCG-----CGGTGGCCGGGACAGAC-----------------AGGCAGGAAG--TCCCAG-GTGCACGGTCC-CAGCTGGCGGGA-----------------------CCTGGAGCTGCCTGTCCCTCAGCTGCA-GTGTCCTGGCCACCGCA-GCCCTC--CC-----------------CTACTGCTTGTC-AC-AGGTGGCATCCTCCCTTCCAGGCCTCTTGCCATGTTCCGGGCAGGAAGAAG--GAGGGGAAGGGGCTGA---------------------CT-------------------------------CCCAGCCAGGACTGTGCCCCAGAGCCC--
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5783673 397 -  36342412 GTCTTTAAATTTATAAAGGTCA-AAACCAACAACTACCTTTGATGCACCAGAAGTTAGAGGGCTTCTCTTTTAACAAATTGGTAGCTTTGCAGGTGGACCAATTAGGAATGTGTT-CAAAGGCAAGTTCTAGAACCTGCCCA-----TGGTG-CTGGAGCAGATGAGGGCTG-TTTGTCTCAGGAAGTGCG--TCCCAGCATGTGCAGTCC-ATGCTGGTGGGA--------------CTGGTGGTGCCTTTAGGGACCTGACCCTCGTGCTCA-GC-TCATCACCACATCA-TCCTTC--CC-------------------------TGCT-GC-TGG-GGTGTCCTCCC---CGGGCCTGTTGTGATGGTCCACGCAGGGGTAAGAGGAAGAGAAAGGG-------------------------TCCCCA-TAAAGGGACTCAGT--CCTTTCTCTCTCGGGTTGGGACTGTGTCCCAGATACT-G
i otoGar3.GL873530               C 0 C 0
s canFam3.chr3                    58214747 305 +  91889043 ATCTCTAAATTTACACACGTGA-AAGAAAAC----CTATTGGATGAACTGGACTCCGGGGAAATGGCCTTTCAGCAGAGTGGTGGCTTCACGGGTGGATGGGTTAGGAA---CTC-GAGCTGCAAGTAG---------CC--------------------AGCCAGCAGTC---------------AGAAG--GCCCGG-GGACAGAGGCC-AGGCTGGCAGGA-------------------------------TGGCCTGCGCTT--CCGTA-GGGACGTGG----AACGTGTCTCC--CTC-------------ACACCCGT-----CC-AC-AGG-------GCCCCCTCCCAGCCTCTTG---TGGTCCAGGCAGGAAGAAG-----GGGCATGCGCTGG---------------------CTCCCAGGGGAGGGACTCGTG-----------------------------TCCAGACGTC-C
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  848880 430 +   1727078 GTCTTTAAGTTTACAAATGTGT-AAATAAAC----ACATTTGATGAACCAAGCATTCAGG---------TTCAGCAAGTTGGCTGCTTCCCAGGAGGAAcacttaggaatgtgtt-gagctgcaagtactggaa----tctgatgactggtggctggaacaaataagggtttatttgttccaggcaacaagaatcccagcgagcatagcgc-aagctggtgggaaggtgtgcagtggctttagggaaccaggcccttgctccctttcagtgcct-ctttctttaccat-gtg-gccttc--ccctcctcatcccccgccccccgtgctggtc-acgaggtggcttcctccactccaggcctcTTCCCATGGTCCACGCAGGAAGAAG---GGAGCAAGGAGCTGA---------------------ATCCCA-GCAATG-ACACTTG--CCTTTTTCTCCC-AGGCAGGGCTAT--CTCTGGCCCC-C
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I

a score=243031.000000
s hg38.chr15_KI270850v1_alt          34516 31 +    430880 CTAGTTGCAAGGGAG-CGGCAGTGGGGTGTGT----------
s panTro5.chr15                   59825859 32 +  83230942 CTAGGTGCAAGGGAGGCGTCAGTGGGGTGTGT----------
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23060717 31 -  99763055 CTAGTTGCAAGGGAG-CGTCAGTGGGGTGTGT----------
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            327879 31 -    378907 CTAGTTGCAAGGGAG-CGGCAGTGGGGTGTGT----------
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      7982 31 -     28805 CTAGTTGCAAGGGAG-CGGCAGTGGGGTGTGT----------
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59995471 31 + 169600520 CTAGTTGCAAGGGAG-TGTGAGGGAGTTGTGT----------
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61593392 31 + 171882078 ATAGTTGCAAGGGAG-CGGCAGTGGGGTGTGT----------
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3916573 30 +   4820037 -TAGTTGCAAGGGAG-CGGCAGTGGGGTGTGT----------
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779055 30 +  10730278 -TAGTTGCAAGGGAG-CGGCAGTGGGGTGTGT----------
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1321479 31 +  24206276 ATAGTTGCAAGGGAG-CGGCAGTGGGGTGTGT----------
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3920221 30 +   4030761 -TAGTTGCAAGGGAG-CGGCAGTGGGGTGTGT----------
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026393 30 +   5013933 -TAGTTGCAAGGGAG-CGGCAGTGGGGTGTGT----------
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748002 29 - 132174527 CTAGTTTCGAGGGGG-TGGCCTCAGGGTGT------------
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   86130 29 -    125141 CTAGTTTCGAGGGGG-CGGCCTCAGGGTGT------------
i saiBol1.JH378378               C 0 C 0
s aotNan1.NW_018503093v1            687949 29 +    730879 CTAGTTTCGAGGGAG-TGGCCTCAGGGTGT------------
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5784070 30 -  36342412 -TAGTTGCAAAGGAG-CTACAGTGGGGCATGT----------
i otoGar3.GL873530               C 0 C 0
s canFam3.chr3                    58215052 31 +  91889043 CTCAATGCACGGGAA-CTACAATGGAGAGTGT----------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  849310 41 +   1727078 CTAACTGCAAAGGCT-CTGTGATGGGGGAGGAGGGGAAGTAA
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e cebCap1.NW_016107334v1             94862 28 +  11725426 I

a score=984424.000000
s hg38.chr15_KI270850v1_alt          34547 89 +    430880 TTTCAGCAGGTCCCACTGCTG---------CCTTGAACAAAATCAGAC-TCTGTTGGTGAGGAAAGAG-GGGGATGGATGTGGGACTGGCAGCTCAGGGG
s panTro5.chr15                   59825891 89 +  83230942 TTTCAGCAGGTCCCATTGCTG---------CCGTTGACAAAATCGGAA-TCTGTTGGTGAGGAAAGAG-GGGAATGAGTGTGGGACTGGCAGCTCAGAGG
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23060748 89 -  99763055 TTTCAGCAGGTCCCACTGCTG---------TCTTGAACAAAATCAGAA-TCTGTTGGTGAGGAAAGAG-GGGGACAGATGTGGGACTGGCAGCTCAGGGG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            327910 89 -    378907 TTTCAGCAGGTCCCACTGCTG---------CCTTGAACAAAATCAGAC-TCTGTTGGTGAGGAAAGAG-GGGGATGGATGTGGGACTGGCAGCTCAGGGG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8013 89 -     28805 TTTCAGCAGGTCCCATTGCTG---------CCTTGAACAAAATCAGAA-TCTGTTGGTGAGGAAAGAG-GGGGACGGATGTGGGACTGGCAGCTCAGGGG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59995502 88 + 169600520 TTTCAGCTGGTCTCATTGCT----------CCTTGAACAAAATCAGAA-TCTGTTGGTGAGGAAAGAG-GGGGACGGGTGTGGAACTGGCAGCTCAGGGG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61593423 88 + 171882078 TTTCAGCTGGTCTCATTGCT----------CCTTGAACAAAATCAGAA-TCTGTTGGTGAGGAAAGAG-GGGGACAGGTGTGGGACTGGCAGCTCAGGGG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3916603 89 +   4820037 TTTCAGCAGGTCCCATTGCTG---------CCTTGAACAAAATCAGAA-TCTGTTGGTGAGGAAAGAG-GGGGATGGGTGTGGGACCGGCAGCTCAGGGG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779085 89 +  10730278 TTTCAGCAGGTCCCATTGCTG---------CCTTGAACAAAATCAGAA-TCTGTTGGTGAGGAAAGAG-GGGGATGGGTGTGGGACTGGCAGCTCAGGGG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1321510 88 +  24206276 TTTCAGCTGGTCTCATTGCT----------CCTTGAACAAAATCAGAA-TCTGTTGGTGAGGAAAGAG-GGGGACAGGTGTGGGACTGGCAGCTCAGGGG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3920251 89 +   4030761 TTTCAGCAGGTCCCATTGCTG---------CCTTGAACAAAATCAGAA-TCTGTTGGTGAGGAAAGAG-GGGGATGGGTGTGGGACCGGCAGCTCAGGGG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026423 88 +   5013933 TTTCAGCAGGTCCCATTGCTG---------CCTTGAACAAAATCAGAA-TCTGTTGGTGAGGAAAG-G-GGGGATGGCTGTGGGACCGGCAGCTCAGGGG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748031 95 - 132174527 TTTCAGCAGGTCCC-TTACTGTAGTTGTGACCTTGAGCAGTATCAGAA-TCTGTTGGTGAGGAAA--G-GGGGACCGGTGTGGGACTGGCAGCTCAGGGG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   86159 96 -    125141 TTTCAGCAGGTCCCATTGCTGTAGTTGGGACCTTGAGCAATATCAGAA-TCTATTGGTGAGGAAA--T-GGGGACAGGCGTGGGACTGGCAGTTCAGGGG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             94890 96 +  11725426 TTTCAGCAGGTCCCATTGCTGTAGTTGGGACCTTGAGCAATATCAGAA-TCCGTTGGTGAGGAAA--G-GGGGACGGGTGTGGGACTGACAGCTCAGGGG
i cebCap1.NW_016107334v1         I 28 C 0
s aotNan1.NW_018503093v1            687978 96 +    730879 TTTCAGCAGGTCCCGTTGCTGTAGTTGGGACCTTGAGCAATATCAGAA-TCTGTTGGTGAGGAAA--G-GGGGACCGGTGTGGGACTGGCAGCTCAGGGG
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5784100 89 -  36342412 CATCAGTAGGTCCTCTTACTG---------CCTGGGACAAAGTCAGAGTTCTGCTGGTGAGGAAGGAG-GGGTGTGGATATGGG-CTGGGAGCTCAGGGA
i otoGar3.GL873530               C 0 I 174
s canFam3.chr3                    58215083 89 +  91889043 TTTCAGCGGGGCCCACGATTA---------CCCTGCACAGAACCAGAATTCTGTTAGGGAAGGAGGAG-CGGATAGGACATGGGA-GGGAAGCACGGGTG
i canFam3.chr3                   C 0 I 1
s dasNov3.JH579681                  849351 89 +   1727078 CTTTAGCAGGTTCCATTGTTG---------CcttgaacaaaatcagcattctgttagtgaggaagaagaggggTCAGACATGGGCCT--CTTCTGAGGTG
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I

a score=210299.000000
s hg38.chr15_KI270850v1_alt          34636 28 +    430880 --AGGGACAACTTACTCTCGGGACCACGGG
s panTro5.chr15                   59825980 26 +  83230942 --AGGGACAGCTTACTCTC-GGACCAC-GG
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23060837 28 -  99763055 --AGGGACAACTTACTCTCTGGACCATGGG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            327999 28 -    378907 --AGGGACAACTTACTCTTGGGACCACGGG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8102 26 -     28805 --AGGGACAACTTG--CTGGGGACCACAGG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59995590 28 + 169600520 --AGGGACAACTTACACTCTGGACCACAGG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61593511 28 + 171882078 --AGGGACAACTTACTCTTTGGACCACAGG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3916692 28 +   4820037 --AGGGACAACTTACTCTCAGGACCACGGG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779174 28 +  10730278 --AGGGACAACTTACTCTCAGGACCACGGG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1321598 28 +  24206276 --AGGGACAACTTACTCTTTGGACCACAGG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3920340 28 +   4030761 --AGGGACAACTTACTCTCAGGACCACGGG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026511 28 +   5013933 --AGGGACAACTTACTCTCAGGACCACGGG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748126 28 - 132174527 --AGGGACAGCTTACTCTTGCGACCCTGGG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   86255 28 -    125141 --AGGCACAGCTTACTCTTGAGACCCCGGG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             94986 28 +  11725426 --AGGGACAGTTTACTCTTGAGACCCCGGG
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            688074 28 +    730879 --AGGGACAGCTTACTCTTGAGACCCCGGG
i aotNan1.NW_018503093v1         C 0 C 0
s canFam3.chr3                    58215173 18 +  91889043 --AAGGAGAGCCTGTTCCTG----------
i canFam3.chr3                   I 1 C 0
s dasNov3.JH579681                  849440  7 +   1727078 TGGGGGG-----------------------
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90191506 1512 + 124595110 I
e otoGar3.GL873530                 5784189 174 -  36342412 I

a score=1803086.000000
s hg38.chr15_KI270850v1_alt          34664 189 +    430880 GCAGGGGGTGGA-GCAGAGAAGGCAGAGCC--ACCAGCAGACG-GGGTCCTGCAGCTGGGCCTCAACAGGCAGTATGGAAGTGAGTGTCCAAGGTGAGGA-ACGTGGCTGTGCAAAGTCCCCAGGTTGGACAGTGGC-AGAGAATGTAAAGGACTGGAGCAGTGCCAAGGCTGG-----TGTGGGGATGGAG---AGCAGGGG
s panTro5.chr15                   59826006 193 +  83230942 GCAGGGGGTGGAGGCAGAGAAGGAAGAGCCAGACCAGCAGAGG-GGGTCCTGCAGCTGGGCTTCAACAGGCAGTATGGAAGTGAGTGTCCAAGGTGAGGAGGCGTGGCTGTGCAAAGTCCCCAGGGTGGGCGGTGGCAAGAGGGTGTGAAGGACAGGAGCAGTGCCAAGGCTGG-----TGTGGGGGTGG-G---AGCAGGGG
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23060865 189 -  99763055 GCAGGGGGTGGA-GCAGAGAAGGCAGAGCC--ACCAGCAGAGG-GGGTCCTGCAGCTGGGCCTCAACAGGCAGTATGGAAGTGAGTGTCCAAGGTGAGGA-GCGTGGCTGTGCAAAGGCCCCAGGGTTGGCAGTGAC-AGAGGGTGTGAAGGACAGGAGCAGTGCCAAGCCTGG-----TGTGGGGATGGAG---AGCAGGGG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            328027 189 -    378907 GCAGGGGGTGGA-GCAGAGAAGGCAGAGCC--ACCAGCAGACG-GGATCCTGCAGCTGGGCCTCAACAGGCAGTATGGAAGTGAGTGTCCAAGGTGAGGA-ACGTGGCTGTGCAAAGTCCCCAGGTTGGACAGTGGC-AGAGGATGTAAAGGACTGGAGCAGTGCCAAGGCTGG-----TGTGGGGATGGAG---AGCAGGGG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8128 189 -     28805 GCAGGGGGTGGA-GCAGGGAAGGGAGAGCC--ACCAGCAGAGG-GGGTCCTGCAGCTGGGCTTCAACGGGCAGTATGGAAGTGAGTGTCCAAGGTGAGGA-GCGTGGCTGTGCAAAGTCCCCAGGGTGGGCAGTGGC-AGAGGGTGTGAAGGACAGGAGCAGTGCCAAGGCTGG-----TGTGGGGATGGAG---AGCAGGGG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59995618 188 + 169600520 GT-GGGGGTGGA-GCCACGAAGGCAGAGCC--ACCTGCAGAGG-GGGTCCTGTGGCTGGGCCTCAACAGGCAGTATGGGAGTGAGTGTCTGAGGTGAGGA-GCGTGGCGATGTAAAGGCCCCAGGATGGGCAGTGGC-GGAGAGTGTGAAGGACAGGAGCAGTGCCAAGGTTGG-----TGCAGGGGTGGAG---AGCAGGGG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61593539 188 + 171882078 GT-GGGGATGGA-GCTGAGAAGGCAGAGCC--ACCTGCAGACA-GGGTCCTGCGGCTGGGCCTCAATAGGCAGTATGGGAGTGAGTGTCCAAGGTGAGGA-GCATGGCCGTGCAAAGGCCCCAGGATGGGCAGTGGC-AGATGGTGTGAAGGACAGGAGCAGTGCCAAGGTTGG-----TACAGGGGTGGAG---AGCAGGGG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3916720 189 +   4820037 GCAGGGGGTGGA-GCAGAGAAGACAGAGCC--ACCTGCAGAGG-GGGTCTTGCGGCTGGGCCTCAACCGGCAGTATGGAAGTGAGTGTCTAAGGTGAGGA-GCGTGGCCGTGCAAAGGCCCCAGGGTGGGCAGTGGC-AGATGGTGTGAAGGACAGGAGCAGTGCCAAGGCTAG-----TACAGGGGTAGAG---AGCAGGGG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779202 189 +  10730278 GCAGGGGGTGGA-GCAGAGAAGACAGAGCC--ACCTGCAGAGG-GGGTCTTGCGGCTGGGCCTCAACCGGCAGTATGGAAGTGAGTGTCTAAGGTGAGGA-GCATGGCCGTGCAAAGGCCCCAGGGTGGGCAGTGGC-AGATGGTGTGAAGGACAGGAGCAGTGCCAAGGCTAG-----TACAGGGGTGGAG---AGCAGGGG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1321626 188 +  24206276 GT-GGGGGTGGA-GCTGAGAAGGCAGAGCC--ACCTGCAGACA-GGGTCCTGTGGCTGGGCCTCAACAGGCAGTATGGGAGTGAGTGTCCAAGGTGAGGA-GCATGGCCGTGCAAAGGCCCCAGGATGGGCAGTGGC-AGATGGTGTGAAGGACAGGAGCAGTGCCAAGGTTGG-----TACAGGGGTGGAG---AGCAGGGG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3920368 189 +   4030761 GCAGGGGGTGGA-GCAGAGAAGACAGAGCC--ACCTGCAGAGG-CGGTCTTGCGGCTGGGCCTCAACCGGCAGTATGGAAGTGAGTGTCTAAGGTGAGGA-GCATGGCTGTGCAAAGGCCCCAGGGTGGGCAGTGGC-AGATGGTGTGAAGGACAGGAGCAGTGCCAAGGCTAG-----TACAGGGGTGGAG---AGCAGGGG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026539 189 +   5013933 GCAGGGGGTGGA-GCAGAGAAGGCAGAGCC--ACCTGCAGAGG-GGGTCCTGCGGCTGGGCCTCAACAGGCAGTATGGAAGTGAGTGTCCAAGGTGAGGA-GCGTGGCTGTGCAAAGGCCCCAGGATGGGCAGTGTC-AGATGGTGTGAAGGACAGGAGCAGTGCCAAGGCTAG-----TACGGGGGTGGAG---AGCAGGGG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748154 176 - 132174527 ---------GGA-GCAGAGAAAGCAGAGCC--ACCAGCAGAGG-GGGTCCTGAGGCTGGGTCTCAGTAGGCA-TATGGAAGTGAGT---TTAAGTGAGGA-GCGTGGCTGTGGAAAAGCCCCCGGGTGGGCAGTGGC-AGAAGGTATGAAGGACAGGAGCAGTGCCAAGGCTAG-----TGTGGGTGCGGGG---AGCGGGGC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   86283 176 -    125141 ---------GGA-GCAGAGAAAGCAGAGCC--ACCAGCAGAGG-GGGTCCTGAGGCTGGGCATCAGCAGGCAGTATGGAAGTGAGT---TTAAGTGAGGA-GTGTGACTGTGGAAAAG-CCCGGGGTGGGCAGTGGC-AGAAGGTATGAAGGACAGGAGCAGTGCCAAGGCTGG-----TGTGGGGGCGTGG---AGCGGGGC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             95014 176 +  11725426 ---------GGA-GCAGAGAAAGCAGAGCC--ACCAGCAGAGG-GGGTCCTGAGGCTGGACCTCAGCAGGCAGTATGGAAGTGAG----TTAAGTGAGGA-GCGTGGCTGTGGAAAAGCCCCGGGGTGGGCAGTGGC-AGAGGGTGTGAAGGACAGGAGCAGTGCCAAGGCTGG-----TGTGGGGGCGGGG---AGCGGGGC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            688102 176 +    730879 ---------GGA-GCAGAGAAAGCAGAGCC--ACCAGCAGA-G-GGGTCCTGAGGCTGGGCCTCAGCTGGCTGTATGGAAGTGAGT---TTAAGTGAGCA-GCGTGGCTGTGGAAAAGCCCCGGGGTGGGCAGTGGC-AGAGGGTATGAAGGATGGGAGCAATGCCAAGGCTGG-----TGTGGGGGTGGGG---AGCGGGGC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5784363 183 -  36342412 GCAGGGTGCAGA-GT---GAAGACAGACCC--TTC--CAGAGG-TAGTCTTGCCACTGGGCTTCAACGGGCAATATGGAAGTGATTGTCCCAGGTGAAGG-G------TTTGTAAAGACCCAGGGGCGGGCCCTGGA-AAAGACTGTGAAGGCCAGAAACAGTGATAAGGCTGGGGGGCTGCAGGGCTGCAG---AGGAATGG
i otoGar3.GL873530               I 174 C 0
s canFam3.chr3                    58215191 134 +  91889043 ------------------------------------------G-GGGTCCTGCTGCTGG--------AGGCGGTGTGGGGGTGCATG--GAAGGTGAGGA-G-ACAGCCATGCCAAGACCCAGAGGCAGGTGGGGGC-AGAG--------GGATGAGAACGGTGACAAAGGTGG-----CATGGGGGTCGGGGCTGGAGAGGA
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  849447 143 +   1727078 --------AAAA-GGGGTGAAGGCAGAGCC--TGC--TAGAGGTTGGTCTTGCCACTGA-----------------------------------TGAagg-gcacagccgtgcaaagatccagaggtgggtagcggt-gga--gtgtaaaggagaggaacagtgatgaagctag-----tgtgTGTGTGTGG---GGGGGGGG
i dasNov3.JH579681               C 0 I 1886
e mm10.chr9                       90191506 1512 + 124595110 I

a score=117152.000000
s hg38.chr15_KI270850v1_alt          34853 19 +    430880 CTGTCCATTGATGCCCCAT
s panTro5.chr15                   59826199 18 +  83230942 CTGCCC-TTCATGCCCCAT
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061054 19 -  99763055 CTGCCCCTTGATGCCCCAT
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            328216 19 -    378907 CTGTCCATTGATGCCCCAT
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8317 19 -     28805 CTGCCCCTTGATGCCCCAT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59995806 19 + 169600520 CTGCCCCTTGTTGCCCAAT
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61593727 19 + 171882078 CTGCCCCTTGTTGCCCAAT
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3916909 19 +   4820037 CTGCCCCTTGATGCCCAAT
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779391 19 +  10730278 CTGCCCCTTGATGCCCAAT
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1321814 19 +  24206276 CTGCCCCTTGTTGCCCAAT
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3920557 19 +   4030761 CTGCCCCTTGATGCCCAAT
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026728 19 +   5013933 CTGCCCCTTGATGCCCAAT
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748330 16 - 132174527 CTGCCCCTTGATGC---AT
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   86459 16 -    125141 CTGCCCCTTGATGC---AT
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             95190 15 +  11725426 CTG-CCCTTGATGC---AT
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            688278 16 +    730879 CGGCCCCTTGATGC---AT
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5784546 17 -  36342412 CCACC--TGGGTGTCAAGG
i otoGar3.GL873530               C 0 C 0
s canFam3.chr3                    58215325  9 +  91889043 ATGTCCCAT----------
i canFam3.chr3                   C 0 I 1606
e mm10.chr9                       90191506 1512 + 124595110 I
e dasNov3.JH579681                  849590 1886 +   1727078 I

a score=476001.000000
s hg38.chr15_KI270850v1_alt          34872 46 +    430880 TTCTTGTCCAGACATTCTCTGATC-CATTGGGAAGGGTGTGGATGGT
s panTro5.chr15                   59826217 45 +  83230942 TTCTTGTCCAGACGTTCTCTGAGC-CA-TGGGAAGGGTGTGGATGGT
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061073 46 -  99763055 TTCTTGTCCAGAGGTTCTCTCAGC-CATTGGGAAGGGTGTGGATGGT
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            328235 46 -    378907 TTCTTGTCCAGACATTCTCTGAGC-CATTGGGAAGGGTGTGGATGGT
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8336 46 -     28805 TTCTTGTCCAGATGTTCTCTGAGC-CATTGGGAACGGTGTGGATGGC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59995825 46 + 169600520 TTCTTTTCCAGATATTCTCTGAGC-CATTGGGAAGGGTGTGGACGGT
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61593746 46 + 171882078 TTCTTTTCCAGATATTCTCTGAGC-CATTGGGAAGGGTGTGGACGGT
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3916928 46 +   4820037 TTCTTGTCCAGATGTTCTCTGAGC-CATTGGGAAGGGTGTGGATGGT
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779410 46 +  10730278 TTCTTGTCCAGATGTTCTCTGAGC-CATTGGGAAGGGTGTGGATGGT
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1321833 46 +  24206276 TTCTTTTCCAGATATTCTCTGAGC-CATTGGGAAGGGTGTGGACGGT
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3920576 46 +   4030761 TTCTTGTCCAGATGTTCTCTGAGC-CATTGGGAAGGGTGTGGATGGT
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026747 46 +   5013933 TTCTTGTCCAGATGTTCTCTGAGC-CATTGGGAAGGGTGTGGATGGT
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748346 46 - 132174527 TTCTTCTCCAGATGTTCTCTGAGC-CATTGTCAAGGGCATGGACAGT
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   86475 46 -    125141 TTCTTCTCCAGATGTTCTCTGAGC-CATTGGGAAGGGCGTGGACAGT
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             95205 46 +  11725426 TTCTTCTCTAGATGTTCTCTGAGC-CATTGAGAAGGGCGTGGACAGT
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            688294 46 +    730879 TTCTTCTCCAGATGTTCTCCGAGC-CATTGGGAAGGGTGTGGACGGT
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5784563 47 -  36342412 TTTTTCTCCAGACTTTTTCTGAGTGCATTGCGAGGGGCCTGAACAAT
i otoGar3.GL873530               C 0 I 1654
e mm10.chr9                       90191506 1512 + 124595110 I
e dasNov3.JH579681                  849590 1886 +   1727078 I
e canFam3.chr3                    58215334 1606 +  91889043 I

a score=36000.000000
s hg38.chr15_KI270850v1_alt          34918 3 +    430880 GGG
s panTro5.chr15                   59826262 3 +  83230942 GGG
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061119 3 -  99763055 GGG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            328281 3 -    378907 GGG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8382 3 -     28805 GGG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59995871 3 + 169600520 GGG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61593792 3 + 171882078 GGG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3916974 3 +   4820037 GGG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779456 3 +  10730278 GGG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1321879 3 +  24206276 GGG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3920622 3 +   4030761 GGG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026793 3 +   5013933 GGG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748392 3 - 132174527 GGG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   86521 3 -    125141 GGG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             95251 3 +  11725426 GGG
i cebCap1.NW_016107334v1         C 0 I 16
s aotNan1.NW_018503093v1            688340 3 +    730879 GGG
i aotNan1.NW_018503093v1         C 0 I 1762
e mm10.chr9                       90191506 1512 + 124595110 I
e dasNov3.JH579681                  849590 1886 +   1727078 I
e canFam3.chr3                    58215334 1606 +  91889043 I
e otoGar3.GL873530                 5784610 1654 -  36342412 I

a score=5362.000000
s hg38.chr15_KI270850v1_alt          34921 1 +    430880 A
s panTro5.chr15                   59826265 1 +  83230942 A
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061122 1 -  99763055 A
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            328284 1 -    378907 A
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8385 1 -     28805 A
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59995874 1 + 169600520 A
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61593795 1 + 171882078 A
i macFas5.chr7                   C 0 I 11
s macNem1.NW_012011533v1           3916977 1 +   4820037 A
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779459 1 +  10730278 A
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1321882 1 +  24206276 A
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3920625 1 +   4030761 A
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026796 1 +   5013933 A
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748395 1 - 132174527 G
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   86524 1 -    125141 G
i saiBol1.JH378378               C 0 C 0
e aotNan1.NW_018503093v1            688343 1762 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e dasNov3.JH579681                  849590 1886 +   1727078 I
e canFam3.chr3                    58215334 1606 +  91889043 I
e cebCap1.NW_016107334v1             95254 16 +  11725426 I
e otoGar3.GL873530                 5784610 1654 -  36342412 I

a score=2163.000000
s hg38.chr15_KI270850v1_alt          34922 1 +    430880 C
s panTro5.chr15                   59826266 1 +  83230942 C
i panTro5.chr15                  C 0 I 41903
s panPan2.chr15                   23061123 1 -  99763055 T
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            328285 1 -    378907 C
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8386 1 -     28805 T
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59995875 1 + 169600520 C
i rheMac8.chr7                   C 0 I 1721
s macNem1.NW_012011533v1           3916978 1 +   4820037 T
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779460 1 +  10730278 T
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1321883 1 +  24206276 C
i chlSab2.chr29                  C 0 I 9
s manLeu1.NW_012102632v1           3920626 1 +   4030761 T
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026797 1 +   5013933 T
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748396 1 - 132174527 C
i calJac3.chr10                  C 0 I 9
s saiBol1.JH378378                   86525 1 -    125141 C
i saiBol1.JH378378               C 0 I 1706
e aotNan1.NW_018503093v1            688343 1762 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e dasNov3.JH579681                  849590 1886 +   1727078 I
e canFam3.chr3                    58215334 1606 +  91889043 I
e cebCap1.NW_016107334v1             95254 16 +  11725426 I
e otoGar3.GL873530                 5784610 1654 -  36342412 I
e macFas5.chr7                    61593796 11 + 171882078 I

a score=9083.000000
s hg38.chr15_KI270850v1_alt          34923 4 +    430880 CGTG
s panTro5.chr15                   59868170 4 +  83230942 GATG
i panTro5.chr15                  I 41903 C 0
s panPan2.chr15                   23061124 4 -  99763055 GATG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            328286 4 -    378907 CGTG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8387 4 -     28805 GGTG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macNem1.NW_012011533v1           3916979 4 +   4820037 GGTG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779461 4 +  10730278 GGTG
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3920627 4 +   4030761 GGTG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026798 4 +   5013933 GGTG
i colAng1.NW_012114844v1         C 0 C 0
e aotNan1.NW_018503093v1            688343 1762 +    730879 I
e mm10.chr9                       90191506 1512 + 124595110 I
e calJac3.chr10                  113748397 9 - 132174527 I
e dasNov3.JH579681                  849590 1886 +   1727078 I
e canFam3.chr3                    58215334 1606 +  91889043 I
e cebCap1.NW_016107334v1             95254 16 +  11725426 I
e otoGar3.GL873530                 5784610 1654 -  36342412 I
e chlSab2.chr29                    1321884 9 +  24206276 I
e macFas5.chr7                    61593796 11 + 171882078 I
e rheMac8.chr7                    59995876 1721 + 169600520 I
e saiBol1.JH378378                   86526 1706 -    125141 I

a score=46674.000000
s hg38.chr15_KI270850v1_alt          34927 8 +    430880 TGTCAGTG
s panTro5.chr15                   59868174 8 +  83230942 TGTCGGTG
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061128 8 -  99763055 TGTCGGTG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            328290 8 -    378907 TGTCAGCG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8391 8 -     28805 TGTCGATG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59997597 8 + 169600520 TGTCGGTG
i rheMac8.chr7                   I 1721 C 0
s macNem1.NW_012011533v1           3916983 8 +   4820037 TGTCGGTG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779465 8 +  10730278 TGTCGGTG
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3920631 8 +   4030761 TGTCGGTG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026802 8 +   5013933 TGTCGGTG
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                   88232 8 -    125141 TGTCTGCG
i saiBol1.JH378378               I 1706 C 0
s mm10.chr9                       90193018 8 + 124595110 TGCCAGTA
i mm10.chr9                      I 1512 C 0
s canFam3.chr3                    58216940 8 +  91889043 TGTCCATG
i canFam3.chr3                   I 1606 I 1
s dasNov3.JH579681                  851476 8 +   1727078 TGCCCACG
i dasNov3.JH579681               I 1886 C 0
e aotNan1.NW_018503093v1            688343 1762 +    730879 I
e calJac3.chr10                  113748397 9 - 132174527 I
e cebCap1.NW_016107334v1             95254 16 +  11725426 I
e otoGar3.GL873530                 5784610 1654 -  36342412 I
e chlSab2.chr29                    1321884 9 +  24206276 I
e macFas5.chr7                    61593796 11 + 171882078 I

a score=4893.000000
s hg38.chr15_KI270850v1_alt          34935 2 +    430880 GT
s panTro5.chr15                   59868182 2 +  83230942 GC
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061136 2 -  99763055 GC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            328298 2 -    378907 GT
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8399 2 -     28805 GC
i nomLeu3.chr6_GL398151_2_random C 0 I 11
s rheMac8.chr7                    59997605 2 + 169600520 GC
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3916991 2 +   4820037 GC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779473 2 +  10730278 GC
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3920639 2 +   4030761 GC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026810 2 +   5013933 GC
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                   88240 2 -    125141 GC
i saiBol1.JH378378               C 0 C 0
s otoGar3.GL873530                 5786264 2 -  36342412 GC
i otoGar3.GL873530               I 1654 C 0
s mm10.chr9                       90193026 2 + 124595110 TC
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58216949 1 +  91889043 G-
i canFam3.chr3                   I 1 C 0
s dasNov3.JH579681                  851484 2 +   1727078 GA
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            688343 1762 +    730879 I
e calJac3.chr10                  113748397 9 - 132174527 I
e cebCap1.NW_016107334v1             95254 16 +  11725426 I
e chlSab2.chr29                    1321884 9 +  24206276 I
e macFas5.chr7                    61593796 11 + 171882078 I

a score=9100.000000
s hg38.chr15_KI270850v1_alt          34937 1 +    430880 C
s panTro5.chr15                   59868184 1 +  83230942 C
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061138 1 -  99763055 C
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8412 1 -     28805 C
i nomLeu3.chr6_GL398151_2_random I 11 C 0
s rheMac8.chr7                    59997607 1 + 169600520 C
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3916993 1 +   4820037 C
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779475 1 +  10730278 C
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3920641 1 +   4030761 C
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026812 1 +   5013933 C
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                   88242 1 -    125141 C
i saiBol1.JH378378               C 0 C 0
s otoGar3.GL873530                 5786266 1 -  36342412 C
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90193028 1 + 124595110 C
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58216950 1 +  91889043 C
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  851486 1 +   1727078 C
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            688343 1762 +    730879 I
e calJac3.chr10                  113748397 9 - 132174527 I
e cebCap1.NW_016107334v1             95254 16 +  11725426 I
e chlSab2.chr29                    1321884 9 +  24206276 I
e macFas5.chr7                    61593796 11 + 171882078 I
e gorGor5.CYUI01015946v1            328300 0 -    378907 C

a score=905005.000000
s hg38.chr15_KI270850v1_alt          34938 123 +    430880 CCTGGACACACTGGGCCCTGAAGGCTCAGGCAGCGGCTCCTCTAGCCATGAGCTCTTCAGTGAGGCTGACTTCATCCTGCGCCACCTGGCCCCATGCCCTTCACCCGCCTCATCACCCAAGCC
s panTro5.chr15                   59868185 123 +  83230942 CCTGGACACACTGGGCCCTGAAGGCTCAGGCAGCGGCTCCTCCAGCCATGCGCTCTTCAACAAGGTTGACTTCATCCTGCGCCACCTGGCCGCATGCCCTTCACCCGCCTCATCACCCAAGCC
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061139 123 -  99763055 CCTGGACACACTGGGCCCTGAAGGCTCAGGCAGCGGCTCCTCCAGCCACGAGCTCTTCAACAAGGTTGACTTCATCCCGCGCCACCTGGCCTCATGCCCTTCACCCGCCTCATCACCCAAGCC
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8413 115 -     28805 CTTGGACACATTGGGCCCTGAAGGCTCAGGCAGCGGCTCCTCCAGCCATGAGCTCTTC--------TGACTTCATCCCGCGCCACCTGGCCCCATGCCCTTCACCTGCCTCATCACCCAAGCC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59997608 123 + 169600520 CCTGGACACACTGTGCCCTGAAGGCTCAGACAGCGGCTCCTCCAGCCATGAGCTCTTCAATGAGGCTGACTTCATCCTGTGCCACCTGGCCCCATGCCCTTCACCTGCCTCATCACTCAAGCC
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3916994 123 +   4820037 CCTGTACACACTGGGCCCTGAGGGCTCAGGCAGCTGCTCCTCCAGCCACGAGTTCTTCAATGAGGCTGACTTCATCCCAGGCCACCTGGCCCCACGCCTTTCACCCACCTCATCACCCAAGCC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779476 123 +  10730278 CCTGTACACACTGGACCCTGAAGGCTCAGGCAGCTGCTCCTCCAGCCACGAGTTCTTCAATGAGGCTGACTTCATCCCAGGCCACCTGGTCCCATGCCTTTCACCCACCTCATCACCCAAGCC
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3920642 123 +   4030761 CCTGTACACACTGGGCCCTGAAGGCTCAGGCAGCTGCTCCTCCAGCCACGAGTTCTTCAGTGAGGCTGACTTCATCCCAGGCCACCTGGCCCCATGCCTTTCACCCACCTCATCACCCAAGCC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026813 123 +   5013933 CCTGTACACACTGGGCCCTGAAGGCTCAGGCAGCGGCTCCTCCAGCCACAAGTTCTTCAATGAGGCTGACTTCATCCCAGGCCACCTGGCCCCACGCCGTTCACCCACCTCATCACCCAAGCC
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                   88243 123 -    125141 CCTGGACACACTGGTCCCTGAAGGCTCAGGGAGCGGCTCCTCCAGCCACGAACTCTTCAACGAGGCTGACTTCATCCCGCGCCACCTGGCCCCACGCCCTTCACCCACCTCAGCACCCAGGCC
i saiBol1.JH378378               C 0 C 0
s aotNan1.NW_018503093v1            690105 123 +    730879 CCTGGACACACTGGCCCCTGAAGGCTCAGGCAGCGGCTCCTCCAGCCACGAGCTCTTCAACGAGGCTGACTTCATCCCGCGCCACCTGGCCCCACGCCCTTCACCCACCTCAGCACCCAGGCC
i aotNan1.NW_018503093v1         I 1762 T 1869
s otoGar3.GL873530                 5786267 123 -  36342412 TTCGGACATGGTGGGCCCTGAAGGCTCGGGGAGCGGCTCCTCCAGTCATGAGCTTTTCAATGAGGTCGACTTCATCCCACACCACCTGGCCCCACGCCCTGTGCCTCCTTCATCCCCTGCGCC
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90193029 123 + 124595110 CATGTACATAGTGGACACAGGTGCCTCTGGAAGCGGCTCCTCCAGCCCCGAGCTCTTCAATGAGGTTGACTTCATCCCGAACCAGCTGGCCCCACGACCTTCCCCAGCATCCTCACCCAAGCC
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58216951 114 +  91889043 ---------CCTGGACCCCGAAGGCTCGGGCAGTGGCTCCTCCAGCCGCGAGCTCTTCAATGAGATCGACTTCATCCCCCCCCGCCTGGCCCCACGCCCTCTGCTCGCCTCGTCCCCCGAGCC
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  851487 123 +   1727078 TCAGGACCTGCTGGGCCCAGAAGGCTCTGGCAGTGGCTCCTCCAGCCATGAGCTCTTCAACGAGGTCGACTTCACCCCAAGGCTTGCGGCCCCACGCCCTCCGACCCCCTCCTCACCCAGGCC
i dasNov3.JH579681               C 0 C 0
e calJac3.chr10                  113748397   9 - 132174527 I
e cebCap1.NW_016107334v1             95254  16 +  11725426 I
e chlSab2.chr29                    1321884   9 +  24206276 I
e macFas5.chr7                    61593796  11 + 171882078 I
e gorGor5.CYUI01015946v1            328300   0 -    378907 C

a score=4282.000000
s hg38.chr15_KI270850v1_alt          35061 1 +    430880 A
s panTro5.chr15                   59868308 1 +  83230942 A
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061262 1 -  99763055 A
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8528 1 -     28805 A
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59997731 1 + 169600520 A
i rheMac8.chr7                   C 0 T 1171
s macNem1.NW_012011533v1           3917117 1 +   4820037 A
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779599 1 +  10730278 A
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3920765 1 +   4030761 A
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026936 1 +   5013933 A
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                   88366 1 -    125141 A
i saiBol1.JH378378               C 0 C 0
s otoGar3.GL873530                 5786390 1 -  36342412 A
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90193152 1 + 124595110 G
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58217065 1 +  91889043 G
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  851610 1 +   1727078 G
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            690228 1869 +    730879 T
e calJac3.chr10                  113748397 9 - 132174527 I
e cebCap1.NW_016107334v1             95254 16 +  11725426 I
e chlSab2.chr29                    1321884 9 +  24206276 I
e macFas5.chr7                    61593796 11 + 171882078 I
e gorGor5.CYUI01015946v1            328300 0 -    378907 C

a score=10071.000000
s hg38.chr15_KI270850v1_alt          35062 2 +    430880 AT
s panTro5.chr15                   59868309 2 +  83230942 GC
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061263 2 -  99763055 GC
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8529 2 -     28805 GC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macNem1.NW_012011533v1           3917118 2 +   4820037 GC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779600 2 +  10730278 GC
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3920766 2 +   4030761 GC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026937 2 +   5013933 GC
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                   88367 2 -    125141 GC
i saiBol1.JH378378               C 0 T 1832
s otoGar3.GL873530                 5786391 2 -  36342412 GC
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90193153 2 + 124595110 GT
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58217066 2 +  91889043 GC
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  851611 2 +   1727078 GT
i dasNov3.JH579681               C 0 T 1906
e aotNan1.NW_018503093v1            690228 1869 +    730879 T
e calJac3.chr10                  113748397 9 - 132174527 I
e cebCap1.NW_016107334v1             95254 16 +  11725426 I
e chlSab2.chr29                    1321884 9 +  24206276 I
e macFas5.chr7                    61593796 11 + 171882078 I
e rheMac8.chr7                    59997732 1171 + 169600520 T
e gorGor5.CYUI01015946v1            328300 0 -    378907 C

a score=5500.000000
s hg38.chr15_KI270850v1_alt          35064 1 +    430880 C
s panTro5.chr15                   59868311 1 +  83230942 C
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061265 1 -  99763055 C
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8531 1 -     28805 C
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macNem1.NW_012011533v1           3917120 1 +   4820037 C
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779602 1 +  10730278 C
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3920768 1 +   4030761 C
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026939 1 +   5013933 C
i colAng1.NW_012114844v1         C 0 C 0
s otoGar3.GL873530                 5786393 1 -  36342412 C
i otoGar3.GL873530               C 0 T 1162
s mm10.chr9                       90193155 1 + 124595110 C
i mm10.chr9                      C 0 T 1531
s canFam3.chr3                    58217068 1 +  91889043 C
i canFam3.chr3                   C 0 T 1691
e aotNan1.NW_018503093v1            690228 1869 +    730879 T
e calJac3.chr10                  113748397 9 - 132174527 I
e dasNov3.JH579681                  851613 1906 +   1727078 T
e cebCap1.NW_016107334v1             95254 16 +  11725426 I
e chlSab2.chr29                    1321884 9 +  24206276 I
e macFas5.chr7                    61593796 11 + 171882078 I
e rheMac8.chr7                    59997732 1171 + 169600520 T
e saiBol1.JH378378                   88369 1832 -    125141 T
e gorGor5.CYUI01015946v1            328300 0 -    378907 C

a score=14967.000000
s hg38.chr15_KI270850v1_alt          35065 6 +    430880 CCAGGA
s panTro5.chr15                   59868312 6 +  83230942 CCGGGA
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061266 6 -  99763055 CCGGGA
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8532 6 -     28805 CCAGGA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macNem1.NW_012011533v1           3917121 6 +   4820037 CCGGGA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779603 6 +  10730278 CCGGGA
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3920769 6 +   4030761 CCGGGA
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026940 6 +   5013933 CCGGGA
i colAng1.NW_012114844v1         C 0 C 0
e aotNan1.NW_018503093v1            690228 1869 +    730879 T
e mm10.chr9                       90193156 1531 + 124595110 T
e calJac3.chr10                  113748397 9 - 132174527 I
e dasNov3.JH579681                  851613 1906 +   1727078 T
e canFam3.chr3                    58217069 1691 +  91889043 T
e cebCap1.NW_016107334v1             95254 16 +  11725426 I
e otoGar3.GL873530                 5786394 1162 -  36342412 T
e chlSab2.chr29                    1321884 9 +  24206276 I
e macFas5.chr7                    61593796 11 + 171882078 I
e rheMac8.chr7                    59997732 1171 + 169600520 T
e saiBol1.JH378378                   88369 1832 -    125141 T
e gorGor5.CYUI01015946v1            328300 0 -    378907 C

a score=39056.000000
s hg38.chr15_KI270850v1_alt          35071 12 +    430880 AGGAGCAGAGGG
s panTro5.chr15                   59868318 12 +  83230942 AGGAGCAGAGGG
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061272 12 -  99763055 AGGAGCAGAGGG
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8538 12 -     28805 AGGAGCACAGGG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59996561 12 + 169600520 AGGAGCAGAGGG
i rheMac8.chr7                   T 1171 C 0
s macNem1.NW_012011533v1           3917127 12 +   4820037 AGGAGCAGAGGG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779609 12 +  10730278 AGGAGCAGAGGG
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3920775 12 +   4030761 AGGAGCAGAGGG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026946 12 +   5013933 AGGAGTAGAGGG
i colAng1.NW_012114844v1         C 0 C 0
e aotNan1.NW_018503093v1            690228 1869 +    730879 T
e mm10.chr9                       90193156 1531 + 124595110 T
e calJac3.chr10                  113748397  9 - 132174527 I
e dasNov3.JH579681                  851613 1906 +   1727078 T
e canFam3.chr3                    58217069 1691 +  91889043 T
e cebCap1.NW_016107334v1             95254 16 +  11725426 I
e otoGar3.GL873530                 5786394 1162 -  36342412 T
e chlSab2.chr29                    1321884  9 +  24206276 I
e macFas5.chr7                    61593796 11 + 171882078 I
e saiBol1.JH378378                   88369 1832 -    125141 T
e gorGor5.CYUI01015946v1            328300  0 -    378907 C

a score=461287.000000
s hg38.chr15_KI270850v1_alt          35083 136 +    430880 AGCTGGTCTTTCATTCTCTTCCCAAGGCTGAAGCCCCAGACCCCGGTCACCCCTCACTCC---------------------------AGCCTGGGCCACCCTGGACACTTATGGTC-CTCCTCTTTGGGTCCCTGGATGTGGAAATAGGCCTCAGGTCACATTC
s panTro5.chr15                   59868330 136 +  83230942 AGTCGGGCTTTCATTCTGTTCCCAAGGCTGAagccccagccccaggtcacccctcacccc---------------------------agccTGGGCCAGCCTGGACACTTGTGGTC-CTCCTCTTTGGGTCCCTGGATGTGGAAATAGGCCTCAGGTCACGCTC
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061284 136 -  99763055 AGTCGGGCTTTCATTCTGTTCCCAAGGCTGAagccccagccccaggtcacccctcacccc---------------------------agccTGGGCCAGCCTGGACACTTGTGGTC-CTCCTCTTTGGGTCCCTGGATGTGGAAATAGGCCTCAGGTCATGCTC
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8550 136 -     28805 AGCCAGGCTTTCATTCTCCTCCCAAGGCTGAAGCCCCAGCCCCCGGTCACCCCTCACCCC---------------------------AGCCCGGGCCAGCCTGGACACTTGTGGTC-CTCCTCTTTGGGTCCCTGGATGTGGAAATAGGCCTCAGGTGACGCTC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59996573 135 + 169600520 AGCCGGGCTTTCATTCTCTTCCCAAGGCTGAAACCCCAGCCCCCAGTC-CCCGTCACCCC---------------------------AGCCTGGGCCAGCCTGGACACCTGTGGTC-CTCCTCTTTGGGCCCCTGGATGTGGAAATAGGCCTCAGGTCACACTC
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3917139 136 +   4820037 AGCTGGGCTTTCATTCTCTTCTCAAGGCTGAAGCCCCAGCCCCTGGTCACCCCTCACCCC---------------------------AGCCTGGGCCAGCGTGGACACCTGTGGTC-CTCCTCTTTGGGCCCCTGGATGTGGAAATAGGCCTCAGGGCAGGCTC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779621 136 +  10730278 AGCTGGGCTTTCATTCTCTTCTCAAGGCTGAAGCCCCAGCCCCTGGTCACCCCTCACCCC---------------------------AGCCTGGGCCAGCGTGGACACCTGTGGTC-CTCCTCTTTGGGCCCCTGGATGTGGAAATAGGCCTCAGGGCAGGCTC
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3920787 136 +   4030761 AGCTGGGCTTTCATTCTGTTCTCAAGGCTGAAGCCCCAGCCCCTGGTCACCCCTCACCCC---------------------------AGCCTGGGCCAGCGTGGACACCTGTGGTT-CTCCTCTTTGGGCCCCTGGATGTGGAAATAGGCCTCAGGGCAGGCTC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4026958 136 +   5013933 AGCTGGGCTTTCATTCTCTTCCCAAGGCTGAAGCCCCAGTCCCTGGTCACCCCTCACCCC---------------------------AGTCTGGGCCAGCCTGGACACCTGTGGTC-CTCCTCTTTGGGCCCCTGGATGTGGAAATAGGCCTCAGGGCAGGCTC
i colAng1.NW_012114844v1         C 0 C 0
s otoGar3.GL873530                 5785232 163 -  36342412 AGCCAGGCTTCTGGCCTCTTCCCAAGGCTAAATCCCCAGG-GCTGGCTGCCCCCCATCCCCAGCTAGGGTCTGGAATGACACTGTGTAGCCAGCACCAGACTGGATACTTCTGGTCACTCTTCTTTGGGTCCCTGGATATGTACATTGGCCTCAGGTCTTACCC
i otoGar3.GL873530               T 1162 T 785
e aotNan1.NW_018503093v1            690228 1869 +    730879 T
e mm10.chr9                       90193156 1531 + 124595110 T
e calJac3.chr10                  113748397   9 - 132174527 I
e dasNov3.JH579681                  851613 1906 +   1727078 T
e canFam3.chr3                    58217069 1691 +  91889043 T
e cebCap1.NW_016107334v1             95254  16 +  11725426 I
e chlSab2.chr29                    1321884   9 +  24206276 I
e macFas5.chr7                    61593796  11 + 171882078 I
e saiBol1.JH378378                   88369 1832 -    125141 T
e gorGor5.CYUI01015946v1            328300   0 -    378907 C

a score=84987.000000
s hg38.chr15_KI270850v1_alt          35219 27 +    430880 AGTTTCCCTGAGGGGAAGGTGGCAGGA
s panTro5.chr15                   59868466 27 +  83230942 AGTTTCCCTGAGGGGAGGGTGGCAGGA
i panTro5.chr15                  C 0 T 42217
s panPan2.chr15                   23061420 27 -  99763055 AGTTTCCCTGAGGGGAGGGTGGCAGGA
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8686 27 -     28805 AGTTTCCCTGAGGGGAGGGTGGCAGGA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59996708 27 + 169600520 AGTTTCCCTGAGGGGAGGGTGGCAGGA
i rheMac8.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3917275 27 +   4820037 AGTTTCCTTGAGAGGAGGGTGGCAGGA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779757 27 +  10730278 AGTTTCCTTGAGAGGAGGGTGGCAGGA
i cerAty1.NW_011999477v1         C 0 C 0
s manLeu1.NW_012102632v1           3920923 27 +   4030761 AGTTTCCTTGAGAGGAGGGTGGCAGGA
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4027094 27 +   5013933 AGTTTCCTTGAGGGGAGGGTGGCAGGA
i colAng1.NW_012114844v1         C 0 C 0
s otoGar3.GL873530                 5784610 13 -  36342412 AGTGGCCTTGATG--------------
i otoGar3.GL873530               T 785 C 0
e aotNan1.NW_018503093v1            690228 1869 +    730879 T
e mm10.chr9                       90193156 1531 + 124595110 T
e calJac3.chr10                  113748397  9 - 132174527 I
e dasNov3.JH579681                  851613 1906 +   1727078 T
e canFam3.chr3                    58217069 1691 +  91889043 T
e cebCap1.NW_016107334v1             95254 16 +  11725426 I
e chlSab2.chr29                    1321884  9 +  24206276 I
e macFas5.chr7                    61593796 11 + 171882078 I
e saiBol1.JH378378                   88369 1832 -    125141 T
e gorGor5.CYUI01015946v1            328300  0 -    378907 C

a score=6600.000000
s hg38.chr15_KI270850v1_alt          35246 1 +    430880 G
s panTro5.chr15                   59826276 1 +  83230942 G
i panTro5.chr15                  T 42217 C 0
s panPan2.chr15                   23061447 1 -  99763055 G
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8713 1 -     28805 G
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59996735 1 + 169600520 G
i rheMac8.chr7                   C 0 T 844
s macNem1.NW_012011533v1           3917302 1 +   4820037 G
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779784 1 +  10730278 G
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1321893 1 +  24206276 G
i chlSab2.chr29                  I 9 C 0
s manLeu1.NW_012102632v1           3920950 1 +   4030761 G
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4027121 1 +   5013933 G
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748406 1 - 132174527 G
i calJac3.chr10                  I 9 C 0
s dasNov3.JH579681                  849707 1 +   1727078 G
i dasNov3.JH579681               T 1906 C 0
e aotNan1.NW_018503093v1            690228 1869 +    730879 T
e mm10.chr9                       90193156 1531 + 124595110 T
e canFam3.chr3                    58217069 1691 +  91889043 T
e cebCap1.NW_016107334v1             95254 16 +  11725426 I
e otoGar3.GL873530                 5784623 0 -  36342412 C
e macFas5.chr7                    61593796 11 + 171882078 I
e saiBol1.JH378378                   88369 1832 -    125141 T
e gorGor5.CYUI01015946v1            328300 0 -    378907 C

a score=6228.000000
s hg38.chr15_KI270850v1_alt          35247 1 +    430880 C
s panTro5.chr15                   59826277 1 +  83230942 C
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061448 1 -  99763055 C
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8714 1 -     28805 C
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61593807 1 + 171882078 C
i macFas5.chr7                   I 11 C 0
s macNem1.NW_012011533v1           3917303 1 +   4820037 C
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779785 1 +  10730278 C
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1321894 1 +  24206276 C
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3920951 1 +   4030761 C
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4027122 1 +   5013933 C
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748407 1 - 132174527 T
i calJac3.chr10                  C 0 C 0
s otoGar3.GL873530                 5784623 1 -  36342412 C
i otoGar3.GL873530               C 0 C 0
s dasNov3.JH579681                  849708 1 +   1727078 C
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            690228 1869 +    730879 T
e mm10.chr9                       90193156 1531 + 124595110 T
e canFam3.chr3                    58217069 1691 +  91889043 T
e cebCap1.NW_016107334v1             95254 16 +  11725426 I
e rheMac8.chr7                    59996736 844 + 169600520 T
e saiBol1.JH378378                   88369 1832 -    125141 T
e gorGor5.CYUI01015946v1            328300 0 -    378907 C

a score=20836.000000
s hg38.chr15_KI270850v1_alt          35248 3 +    430880 CAC
s panTro5.chr15                   59826278 3 +  83230942 CAC
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061449 3 -  99763055 CAC
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8715 3 -     28805 CAC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61593808 3 + 171882078 CAT
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3917304 3 +   4820037 CAT
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779786 3 +  10730278 CAT
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1321895 3 +  24206276 CAT
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3920952 3 +   4030761 CAT
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4027123 3 +   5013933 CAT
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748408 3 - 132174527 CAT
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   86537 3 -    125141 CAT
i saiBol1.JH378378               T 1832 C 0
s otoGar3.GL873530                 5784624 3 -  36342412 CAT
i otoGar3.GL873530               C 0 C 0
s dasNov3.JH579681                  849709 3 +   1727078 CAT
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            690228 1869 +    730879 T
e mm10.chr9                       90193156 1531 + 124595110 T
e canFam3.chr3                    58217069 1691 +  91889043 T
e cebCap1.NW_016107334v1             95254 16 +  11725426 I
e rheMac8.chr7                    59996736 844 + 169600520 T
e gorGor5.CYUI01015946v1            328300 0 -    378907 C

a score=18358.000000
s hg38.chr15_KI270850v1_alt          35251 2 +    430880 GG
s panTro5.chr15                   59826281 2 +  83230942 GG
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061452 2 -  99763055 GG
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8718 2 -     28805 GG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61593811 2 + 171882078 GA
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3917307 2 +   4820037 GG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779789 2 +  10730278 GG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1321898 2 +  24206276 GA
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3920955 2 +   4030761 GG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4027126 2 +   5013933 GG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748411 2 - 132174527 GG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   86540 2 -    125141 GG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             95270 2 +  11725426 GG
i cebCap1.NW_016107334v1         I 16 C 0
s aotNan1.NW_018503093v1            688359 2 +    730879 GG
i aotNan1.NW_018503093v1         T 1869 C 0
s otoGar3.GL873530                 5784627 2 -  36342412 GG
i otoGar3.GL873530               C 0 C 0
s dasNov3.JH579681                  849712 2 +   1727078 AG
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90193156 1531 + 124595110 T
e canFam3.chr3                    58217069 1691 +  91889043 T
e rheMac8.chr7                    59996736 844 + 169600520 T
e gorGor5.CYUI01015946v1            328300 0 -    378907 C

a score=296993.000000
s hg38.chr15_KI270850v1_alt          35253 26 +    430880 CTGGGTTTGCATGCTAGCAGCagctg
s panTro5.chr15                   59826283 26 +  83230942 CTGGGTTTGCATGCTAGCAGCagctg
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061454 26 -  99763055 CTGGGTTTGCATGCtaacagcagctg
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8720 26 -     28805 CTAGGTTTGCATGCTAGCAGCagctg
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59995892 26 + 169600520 CTGGGTTTGCATGCTAGCAGCagctg
i rheMac8.chr7                   T 844 C 0
s macFas5.chr7                    61593813 26 + 171882078 CTGGGTTTGCATGCTAGCAGCagctg
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3917309 26 +   4820037 CTGGGTTTGCATGCTAGCAGTagctg
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779791 26 +  10730278 CTGGGTTTGCATGCTAGCAGCagctg
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1321900 26 +  24206276 CTGGGTTTGCATGCtagtagcagctg
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3920957 26 +   4030761 CTGGGTTTGCATGCTAGCAGCagctg
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4027128 26 +   5013933 CTGGGTTTGCGTGCTAGCAGCagctg
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748413 26 - 132174527 CTGGGTTTGCATGCTATCAGCaactg
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   86542 26 -    125141 CTGGCTTTGCATTCTAGCAGCagctg
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             95272 26 +  11725426 CTGGGTTTGCATGCTAGCAGCagctg
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            688361 26 +    730879 CTGGGTTTGCATGCTAGCAGCagctg
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5784629 26 -  36342412 GTGGGTTTATATGCTCACAGTAGCTG
i otoGar3.GL873530               C 0 C 0
s dasNov3.JH579681                  849714 26 +   1727078 CTAGATTTGCATGCTAGCGGCagctg
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90193156 1531 + 124595110 T
e canFam3.chr3                    58217069 1691 +  91889043 T
e gorGor5.CYUI01015946v1            328300  0 -    378907 C

a score=1824731.000000
s hg38.chr15_KI270850v1_alt          35279 216 +    430880 gcatggatcgagctctt-aggatgtgccgggcac-gggctgagcctgcacatgca-agaacacatgcagtcctccctcc---aggacatggagg-aggcaggattgttgctcccacttcacagaggaggacgctgaggttcagagaggccaaatgagctg-ccc-aggcatctcagctaggatgcagagggt-------ctgggcacc--caac---cca---------CTAAACCTCCACACTC--T
s panTro5.chr15                   59826309 205 +  83230942 gcatggatcgagctctttaagatg-gccgggcac-gggccgagcctacacatgcagagaacacatgcagtcctcc-tcc---agg--------g-aggcaggattgttgctcccacttcacagaggaggacactgaggttcagagaggccaaatgagctg-gcc-catggtttcagctaggaagcagagggt-------ctgggccc-----ac---cca---------ctaaacctccacactc--t
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061480 215 -  99763055 tta-ggatcgagctctt-aggatgtgccgggcac-gggccgagcctgcacatgca-agaacacacgcagtcctccctcc---aggacatggagg-aggcaggattgttgctcccacttcacagaggaggacactgaggttcagagaggccaaatgagctg-ccc-aggcgtctcagctgggatgcagagggt-------ctgggcacc--caac---cca---------CTAAAAATCCACACTC--T
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8746 218 -     28805 gcatggattgagctctt-aggatgtgccgggcac-gggccgagcctgcacatgca-agaatacacgcagtcccccctcc---agggcttggagg-aggcaggattgttgctcccactttacagaggaggacgctgaggttcagagaggccaaatgagctg-ccc-aggcatctcagctaggaagcagagggt-------ctgggcacc--caac---cca---------ctaaacctccacactctgt
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59995918 216 + 169600520 gcacggatcgagctctt-aggatgtgcggggcac-aggccgagcctgcacatgca-agaacacacgcagtcctccctcc---agggcttggagg-aggcaggattgttgctctcacttcccagaggaggacgctgaggttcagagaggccaaatgagctg-tcc-aggcatctcagttaggaagcagagggt-------ctgggcacc--caac---cca---------CGAAACCTCCACACTC--T
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61593839 216 + 171882078 gcatggatcgagctctt-aggatgtgcggggcac-aggccgagcctgcacatgca-agaacacacgcagtcctccctcc---agggcttggagg-aggcaggattgttgctcccacttcccagaggaggacgctgaggttcagagaggccaaatgagctg-tcc-aggcatctcagttaggaagcagagggt-------ctgggcacc--caac---cca---------CGAAACCTCCACACTC--T
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3917335 217 +   4820037 gcacggatcgagctctt-aggatgtgctgggcgt-gggccgagcctgcacatgca-agaacacacgcaatcctcccttc---agggcttggagg-aggcaggattgttgctcccacttcccagaggaggacgctgaggttcagagaggccaaatgagttg-tcc-agg-gtttcagctaggatgcagagggt-------cgggGCACCAAAAAC---CTG---------TTAATCCTCCACACTC--T
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9779817 217 +  10730278 gcacggatcgagctctt-aggatgtgctgggcgt-gggccgagcctgcacatgca-agaacacacgcagtcctccctcc---agggcttggagg-aggcaggattgttgctcccacttcccagaggaggacgctgaggttcagagaggccaagtgagttg-tcc-agg-gtttcagctaggatgcagagggt-------cgggGCACCAAAAAC---CTG---------TTAATCCTCCACACTC--T
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1321926 198 +  24206276 gcatggatcgagctctt-aggatgtgcggggcac-aggccgagcctgcacatgca-agaacacacgcagtcctccctcc---agggcttggagg-aggcaggattgttgctcccacttcccagaggaggacgctgaggttcagagaggtcaaatgagctg-tcc-aggcatctcagttaggaagcagagGGT-------CTG--------------------------------CTTCCACACTC--T
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3920983 217 +   4030761 gcacggatcgagctctt-aggatgtgctgggcgt-gggccgagcctgcacatgca-agaacacacgcagtcctccctcc---agggcttggagg-aggcgggattgttgctcccacttcccagaggaggacgctgaggttcagagacgccaaatgagttg-tcc-agg-gtttcagctaggatgcagagggt-------cgggGCACCAAAAAC---CTG---------TTAATCCTCCACACTC--T
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4027154 217 +   5013933 gcatggattgagctctt-aggatgtgccaggcgt-gggccgagcctgcacatgca-agaacacacacagtcctccctcc---agggcttggagg-aggcaggatttttgctcccacttcacagaggaggacgctgaggttcagagaggccaaatgagttg-tcc-agg-gtttcagctaggatgcagagGGT-------CGAGTCACCAAAAAT---CTA---------TTAATCCTCCACTCTC--T
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748439 213 - 132174527 gcatggattgagctctt-aggatgtgccgggcat-gggctgagcccgcacatgca-aagccatgagcagtcctccctct---ggggctttgaggcagacaggattgtcactccaacttcacagaggaggacgctgagattcaaagaggccaaatgagctg-ccc-aggCATCTC----AGGAAGCAGAGGGT-------CTGGGGACC--TAAT---CCA---------CTAAACCTCCACACTG--T
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   86568 213 -    125141 gcacggatcgagctctt-aggatgtgctgggcac-gggctgagcccgcacatgca-aggccacaagcagtcctccctcc---ggggcttagaggcaggcaggattgtcactccaacttcacagaggaggacgctgaggtt----gaggccaagtgagctg-ccc-aggcctctcagctaggaagcagagggt-------ctggagacc--caac---cca---------CTAAACCTCCACACTG--T
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             95298 216 +  11725426 gcacacatcgagctctt-aggatgtgccaggcac--ggctgagcccgcacacgca-aggccacaagcagtcctccctcc---ggggcttggaggcaggcaggattgtcactccaacttcacagaggaggccgctgaggttcagagaggccaaatgagctg-ccc-aggcatctcagctaggaagcagtgggt-------ctggggacc--caac---cca---------ctaaacctccacactg--t
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            688387 204 +    730879 gcacggatcgagctctt-aggatgtgctgggcac-aggctgagcccgcacacgca-aggccatgagcagtcctccctcc---ggggtttggaggcagacaggattgtcactccaacctcacagaggaggatgctgaggttcagaggggccaaatgagccg-ccc-aggtgtctcagctaggaag--------------------gacc--cgac---cca---------TTAAACGTCCACACTG--T
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5784655 187 -  36342412 GCAC----TGAACTTAT-AGGATATGCCAGGCAT-AGGCTGAGCCTGCATGGGCA-CGG-------------CCCCACC---ATGGTTTtgaggcaggtattactgttgctcccatttcacagatgaggatactaaggttcagagaggccatgctagctg-cccaaggcctctcagctaggaagaggtgggt-------------gcc---------------------ctaaacc-ccacactc--t
i otoGar3.GL873530               C 0 C 0
s canFam3.chr3                    58215378 213 +  91889043 GCATGGACC---CTGCT-AGAAGGGTCGGTGCTC-AGGCTGGGATTGGATTTGCA-TGACCACATGGTGTTCTCCTTCCCCGGGGGCTTTCAggcaggtattactgttac---------------atagaccctgaggttcagagaggctgagggagctg-cccaaggcgtcctagctagGATGCCAAGGGCTGCCCCCCCGCCCCCC--CGACTGTCCC---------CCAAGCCTGCACACTC--T
i canFam3.chr3                   T 1691 C 0
s dasNov3.JH579681                  849740 220 +   1727078 gcatcttttgaaccctt-atggagtagcaggcacagggctgagcctgcacatgca-tgaccacaggtaaaaaagc-------agggctttg----aggcagtgttactactcccatttcacagatgaggaaactgagcttcagagaggctaagtgagctgttcc-agtcctctcagctacaaagtggttcag-------ctgggcccc--caac---ccaaatctgtctCTGAACCTCCCTACTG--T
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90193156 1531 + 124595110 T
e gorGor5.CYUI01015946v1            328300   0 -    378907 C

a score=218030.000000
s hg38.chr15_KI270850v1_alt          35495 64 +    430880 GCCACCCCTCCAGGGGCAGT-CA-GAGGG-GAAGCTA-CATA--GGAGAGG----GGGT-----------GGG--------TGAGAACC---A------GG---A
s panTro5.chr15                   59826514 62 +  83230942 gca--ccctCCAGGGGCA-C-CA-GAGGG--AGGCTATCATA--GGAGAAG----GGGT-----------GTG--------TG-GAAC----A------GGCCAA
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061695 58 -  99763055 GCCACCCCTCCAG------T-CA-GAGGG-GAGGCTA-CATA--GGAGAGG----GGGT-----------GGG--------TGAGAACC---A------GG---A
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      8964 64 -     28805 gcCACCCCTCCAGGGGCAGT-CA-GAGGG-GAGGCTA-CATA--GGAGAGG----GGGT-----------GGG--------TGAGAACC---A------GG---A
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59996134 61 + 169600520 GCCACCCGTCCAGGGGCAGT-CA-GAGGG-GAGGCTA-CATA--GGAGAGG----GTGT-----------GAG--------TGAGAACC---A------------
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61594055 61 + 171882078 GCCACCCGTCCAGGGGCAGT-CA-GAGGG-GAGGCTA-CATA--GGAGAGG----GTGT-----------GAG--------TGAGAACC---A------------
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3917552 63 +   4820037 GCCACCCCTCCAGGGGCAGC-CA-GAGGG-GAAGCTA-CATAAGAGAGAGG----GGGT-----------GAG--------TGAGAACC---A------------
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9780034 66 +  10730278 GCCACCCCTCCAGGGGCAGC-CA-GAGGG-GAAGCTA-CATAAGAGAGAGG----GGGT-----------GAG--------TGAGAACC---GGGA---------
i cerAty1.NW_011999477v1         C 0 I 87
s chlSab2.chr29                    1322124 64 +  24206276 GCCACCCGTCCAGGGGCAGT-CA-GAGGG-GAGGCTA-CATA--GGAGAGG----GTGT-----------GAG--------TGAGAACCAGGA------------
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3921200 63 +   4030761 GCCACCCCTCCAGGGGCAGC-CA-GAGGG-GAAGCTA-CATAAGAGAGAGG----GGGT-----------GAG--------TGAGAACC---G------------
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4027371 66 +   5013933 GCCACCCCTCCAGGGGCAGC-CA-GAGGG-GAGGCTA-CATAAGAGAGAGG----GGGT-----------GAG--------TGAGAACC---A---GGA------
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748652 50 - 132174527 GCCACCTCTCCAGGGACAGT-CA-GAGGG--AGGCTA-TGTA--GGAGAGG------GA-----------GGG--------T-----------------------
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   86781 57 -    125141 GCCACCTCCCCAGGGACAGT-CA-GAGGG--AGGCTA-CGTA--GGAGAGG------GC-----------GGG--------TGAGAGCA----------------
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             95514 57 +  11725426 gccacctctCCAGGGACAGT-CA-GAGGG--AGGCTA-CGTA--GGAGAGG------GC-----------GGG--------TGAGAGCA----------------
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            688591 57 +    730879 GCCACCTCTCCAGGGACAGT-CA-GAGGG--AGGCTA-TGTA--GGAGAGG------GT-----------GGG--------TGAGGGCA----------------
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5784842 63 -  36342412 gccacctg-ccagtGGTACCACA-GAGGG-GAAGAT--TGTA--GGAGGGGTTAGGGGT-----------GAGCC-----CTGGGA-------------------
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90191625 66 + 124595110 GCCACCACT-AAGAAGCAGC-AA-GGTGG----GCCA-CCTACAGTATAGG----GTGTCACGGAGGGAAGGC--------TGGGA-------------------
i mm10.chr9                      T 1531 C 0
s canFam3.chr3                    58215591 33 +  91889043 -GCTCCCATCCAGGGG-----CA-GAGGCAAAGGCTG-------GGA----------------------------------------------------------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  849960 64 +   1727078 GGCCCATCCTCAAGGACATC-TGTGAGGG-GAGGCTG-CGTT--GAAGGGG------GC-----------GGGGCGAAGGCTGGGG-------------------
i dasNov3.JH579681               C 0 C 0
e gorGor5.CYUI01015946v1            328300  0 -    378907 C

a score=240962.000000
s hg38.chr15_KI270850v1_alt          35559 56 +    430880 GGACAG-CAAG---GAGGCG-ACGGTGGAGGTCTGCCTTCATCCTGACATGGGCAGTAAGG
s panTro5.chr15                   59826576 46 +  83230942 GGACAGTCGAG---GAGGTGGACGGTGGACGGTTGTCTTCATCCTGACA------------
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23061753 56 -  99763055 GGACAG-TGAG---GAGGCG-ACGGTGGAGGTCTGCCTTCATCCTGACATGGGCAGTAAGG
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      9028 46 -     28805 GGACAG-CGAG---GAGGCG-ACGGTGGAGGTCTGCCTTCATCCTGACATG----------
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59996195 56 + 169600520 GGACAG-CAAG---GAGGCG-ATGGTGGAGGTCTGCCTTCATCCTGACATGGGCAGTAAGG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61594116 58 + 171882078 GGAGGA-CAAG-AAGAAGCG-ACGGTGGAGGTCTGCCTTCATCCTGACATGGGCAGTGAGG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3917615 56 +   4820037 GGACAG-CAAG---GAGGTG-AGGGTGGAGGTCTGCCTTCATCCTGACATGGGCAGTAAGG
i macNem1.NW_012011533v1         C 0 C 0
s chlSab2.chr29                    1322188 56 +  24206276 GGACAG-CAAG---GAGGCG-ATGGTGGAGGTCTGCCTTCATCCTGACATGGGCAGTGAGG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3921263 56 +   4030761 GGACAG-CGAG---GAGGTG-GAGGTGGAGGTCTGCCTTCATCCTGACATGGGCCGTAAGG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4027437 56 +   5013933 GGACAG-CGAG---GAGGTA-ACGGTGGAGGTCTGCCTTCATCTTGACATGGGCAGTAAGG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748702 37 - 132174527 GGACAG-CAAGGAAGAGGCA-GTGGTGGAGGTTTGCCTT----------------------
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   86838 37 -    125141 GGGCAG-CAAGGAGGAGGCA-GCCGTGGAGATCGGCCTT----------------------
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             95571 37 +  11725426 GGACAG-CAAGGAGGAGGCA-GCCGTGGAGGTCTGCCTT----------------------
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            688648 37 +    730879 GGACAG-CAAGGGGGAGGCA-GTGGTGGAGGTCTGCCTT----------------------
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5784905 53 -  36342412 GGGAAG-TCAG---GAAGAG----GAGGAGGCCTGCCTTTATCCTGGCATATGCAGTGAGG
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90191691 51 + 124595110 GGACAG---AG---GAGGCT----ATGGAGGCCTGCCTTCACCCTGACAGAGGCAGTGGAA
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58215624 14 +  91889043 GGACAG-TGAG---AAGG-------------------------------------------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  850024 30 +   1727078 GGACTG-CG-----GAGGAG----GTGGTGGGCTGCCCTT---------------------
i dasNov3.JH579681               C 0 C 0
e cerAty1.NW_011999477v1           9780100 87 +  10730278 I
e gorGor5.CYUI01015946v1            328300  0 -    378907 C

a score=2041710.000000
s hg38.chr15_KI270850v1_alt          35615 207 +    430880 CATCCTGACATGGGCAGTAAGGCGCTGTTCTGGGAGGGTTCT-G-GCAGAGA---------GGGT--------GTCTTT--GGGT---------CTTGGGCGGTGGGCA-------CC-TGGGTG-CCAGTCCCAGGCTGA-A--CGCC-ATGGCCC-CT-AGGTGTGCAGAGGCAGAGTGTGTA-CTGCTCGGAGC-GGCAGGCAGGGCCCGTGG-ACGAGGAGCACTGTGACCCCCTGGGCCGGCCCGATGAC
s panTro5.chr15                   59826622 199 +  83230942 --------CA--GGCAGTAAGGCGCTGTTCTGGGAGGGTTCT-G-GCAGAGA---------GAGT--------GTCTTT---GGT---------CTT-GGCGGTGGGCA-------TC-GCGGTGCCCAGTCCAGGGCTGAGA--CCCC-ATGGCCC-CTAAGGTGTGCAGACGCA-AGTGTGTACCTGCTCAGAGCGGGCAGGCAGGACTGGTGGTACGAGGAGCACTGTCATCCCCT-GGCCGGCCTGATGAC
i panTro5.chr15                  C 0 I 42241
s panPan2.chr15                   23061809 207 -  99763055 CATCCTGACACGGGCAGTAAGGCGCTGTTCTGGGAGGGTTCT-G-GCAGAGA---------GGGT--------GTCTTT--GGGT---------CTTGGGCGGTGGGCA-------CC-TGGGTG-CCAGTCCCAGGCTGA-G--CCCC-GTGGCCC-CT-AGGTGTGCAGAGGCAGAGTGTGTA-CTGCTTGGAGC-GGCAGGCAGGGCCCGTGG-ACGAGGAGCACTGTGACCCCCTGGGCCGGCCCGATGAC
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      9074 195 -     28805 ------------GGCAGTAAGGCGCTGTTCTGGGAGGGTTCT-G-GCAGAGA---------CGGT--------GTCTTT--GGGT---------CTTGGGCGGTGGGCA-------CC-TGGGTG-CCAGTCCCAGGCTGA-G--CCCC-ATGGCCC-CT-AGGTGTGCAGAGGCAGAGTGTGTA-CTGCTCGGAGC-AGCAGGCAGGGCCCGTGG-ACGAGGAGCACTGTGACCCCCTGGGCCGGCCCGATGAC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59996251 179 + 169600520 ----------------------CG-----CTGGGAGGG-TCT-G-GCAGAAA---------GGGT--------GTCTTT--GGGT---------CTTGGGCGGTGGGCA-------CC-TGGGTG-CCAGTCCCAGGCTGA-G--CCCC-ATGGCCC-CT-AGGTGTGCAGAGGCAGAATGGATA-CTGCTCGGAGC-AGCAAGCAGGGCCCGTGG-ACGAGGAGAACTGTGCCCCCCTGGGCCAGCCCGATGAC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61594174 179 + 171882078 ----------------------CG-----CTGGGAGGG-TCT-G-GCAGAAA---------GGGT--------GTCTTT--GGGT---------CTTGGGTGGTGGGCA-------CC-TGGGTG-CCAGTCCCAGGCTGA-G--TCCC-ATGGACC-CT-AGCTGTGTAGAGGCAGAGTGTGTA-CTGCTTAGAGT-GGCAGGCAGGGCCCGTGG-ACGGAGAGCACTCTGCCCCCCAGGGCTGGCCCGATGAC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3917671 185 +   4820037 ----------------------CGCTGTTCTGGGAGGGTTCT-G-GCAGAAA---------GGGT--------GTCTTT--GGGT---------CTTGGGCGGTGGCCA-------CC-TGGGTG-CCAGTCCCAGGCTAA-A--CCCC-ATGGCCC-CC-AGGTGTGCAGAGGCAGAGTGTGTA-CTGTTCGGAGC-GGCAGACAGGGCCCGTGG-ATGAGGAGCACTGTGACCCCCTGGGCCGGCCCGATGAC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9780187 206 +  10730278 CATCCTGACATGGGCAGTAAGGCGCTGTTCTGGGAGGG-TCT-G-GCAGAAA---------GGGT--------GTCTTT--GGGT---------CTTGGGCGGTGACCA-------CC-TGGGTG-CCAGTCCCAGGCTAA-G--CCCC-ATGGCCC-CC-AGGTGTGCAGAGGCAGAGTGTGTA-CTGTTCGGAGC-GGCAGACAGGGCCCGTGG-ACGAGGAGCACTGTGACCCCCTGGGCCGGCCCGATGAC
i cerAty1.NW_011999477v1         I 87 C 0
s chlSab2.chr29                    1322244 177 +  24206276 ----------------------CG-----CTGGGAGGG-TCT-G-GCAGAAA---------GGGT--------GTCTTT--GGGT---------CTTGGGTGGTGGGCA-------CC-TGGGTG-TCAGTCCCAGGCTGA-G--TCCC-ATGGCCC-CT-AGGTGTGTAGAGGC--AGTGTGTA-CTGCTTAGAGT-GGCAGGCAGGGCCCGTGG-ACGGAGAGCACTCTGCCCCCCGGGGCTGGCCCAATGAC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3921319 184 +   4030761 ----------------------TGCTGTTCTGGGAGGG-TCT-G-GCAGAAA---------GGGT--------GTCTTT--GGGT---------CTTGGGCGGTGACCA-------CC-TGGGTG-CCAGTCCCAGGCTAA-G--CCCC-ATGGCCC-CC-AGGTGTGCAGAGGCAGAGTGTGTA-CTGTTCGGAGC-GGCAGACAGGGCCCGTGG-ACGAGGAGCACTGTGACCCCCTGGGCCGGCCCGATGAC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4027493 185 +   5013933 ----------------------CGCTGTTCTGGGAGGGTTCT-G-GCAGAAA---------GGGT--------GTCTTT--GGGT---------CTTGGGCGGTGGGCA-------CC-TGGGTG-CCAGTCCCAGGCTGA-G--CCCC-ATGGCCC-CC-AGGTGTGCAGAGGCAGAGTGTGTA-CTGCTCGGAGC-GGCAGGCAGGGCCCGTGG-ACGAGGAGCACTGTGACCCCCTGGGCCGGCCCGATGAC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748739 207 - 132174527 CATCCTGACATGGGCAGTGAGGTGCTGTTCTGGGAGGGTTCT-G-GCAGAAA---------TGGT--------GTCTTT--GGGT---------CTTGGGCTGTGGGCA-------CC-TGGGTG-CCAGGCCCAGGCTGA-G--CCCC-ACGGCCC-CT-AGGTGTGCAGAGGCAGAGTGTGTA-CTGCTTGGAGC-AGCAGGCAGGGCCTGTGG-ATGAGGGGCACTGTGACCCCCTGGGCCAGCCCGATGAC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   86875 207 -    125141 CATCTTGAAACGGGTGGTGAGGCGCTGTTCTGGGAGGGTTCT-G-GCAGAAA---------TGGT--------GTCTTT--GGGT---------CTTGGGTGGTGGGCA-------CC-TGGGTG-CCAGGCCCAGGCTGA-G--CCCC-ACGGCCC-CT-AGGTGTGCAGAGGCAGAGTGTGTA-CTGCTCGGAGC-GGCAGGCAGGGCCTGTGG-ACGAGGGGCACTGTGACCCCCTGGGCCAGCCCGATGAC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             95608 207 +  11725426 CATCCGGACACGGGCGGTGAGGTGCTGTTCTGGGAGGGTTCT-G-GCAGAAA---------TGGT--------GTCTTT--GGGT---------CTTGGGTAGTGGGCA-------TC-TGGATG-CCAGGCCCAGGCTGA-G--CCCC-ATGGCCC-CT-AGGTGTGCAGAGACAGAGTGTGTA-CTGCTCGGAGC-GGCAGGCAGGGCCTGTGG-ACGAGGGGCACTGTGACCCCCTGGACCAGCCCGATGAC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            688685 207 +    730879 CATCCTGACACGGGCAGTGATGGGCTGTTCTGGGAGGGTTCT-G-GCAGAAA---------TGGT--------GTCTTT--GGGT---------CTTGGGCGGTGGGCA-------CC-TGGGTG-CCAGGCCCAGGCTGA-G--CCCC-ACGGCCC-CT-AGGTGTGCAGAGGCAGAGTGTGTA-CTGCTCGGAGC-GGCAGGCAGGGCCTGTGG-ATGAGGGGCACTGTGACCCCCTGGGCCAGCCCGATGAC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5784958 174 -  36342412 ----------------------CTCTGTTCTGGGAGGGTTCTGG-GCAGAGA---------GGGT------------------GT---------CTTGGGCAGTGGGTG-------CC-TGGGTC-CCAATTCTG----CA-T--GCCT-ATGTCTC-CC-AGGTGTGCAGAGGCAGAGCGTGTA-CTGCACAGAGC-AGCAGGCAGGGCCTGTGG-ACGAGGAGCATTGTGACCCCCTGGGCCGGCCAGATGAC
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90191742 182 + 124595110 ----------------------CCCTGTTTTGTGAGGTCTCT---GCAGAGA---------GGTT--------GTGTGT--ATGT---------CTCTTG----GGGCA-------TT-CTGGTG-CCGGGCCCAGGCTGA-ATTCCCC-GTGGCTT-CC-AGGCGTGCAGAGGCAGAGCTTATA-CTGCATGGAGA-GGCAGGCTGGGGTTGTTG-CTGAGGAATACTGTAACACTCTAAATCGGCCCGATGAA
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58215638 213 +  91889043 ------------AGTGATGAGGCCTTGCTCTGAGAGGC-CCT-A-GCAGAGC---------GGGTGTGGCCTTGTCTTC--AGGCTCAGGGCAGCTTGGGCAGGGGGCA-------CCGTAGGGG-CCAGGCCCAGGCTGA-G--CCCCTGTGATCC-CC-AGGTATGCAGAGGCAGAGCGTGCA-CTGCACTGAGC-AACAGGCAGGGCCTGTGG-ATGAGCGACACTGTGACCCCCTGAGCCGGCCTGATGAC
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  850054 228 +   1727078 CATCCTGATGGAGGCAGTAAGGCCCTGTTCTGAGAGGGCCCT-GAGCAGAGAACGGTGGACAAGT--------GTTCTGAGGGGG---------CAGGGAGGGTGGGCAGGGACACCC-CGGGCG-CCAGGCCCGGGCTAAGG--CCCC-ATGGCCCTCC-AGGCACACAGAGGCAGAGCGTGTA-CTGCTCTGAGC-TGCAGGCAAGTCCTGTGG-ATGCGACACGCTGTGACCCCCTGAGCCGGCCCGATGAC
i dasNov3.JH579681               C 0 C 0
e gorGor5.CYUI01015946v1            328300   0 -    378907 C

a score=628137.000000
s hg38.chr15_KI270850v1_alt          35822 51 +    430880 TGCCAGAGGAAGTGCAGCCAGCAGCCCTGCCCTGCCAGGTGAGCCC-G-CCCC-------
s panTro5.chr15                   59869062 51 +  83230942 TGCCAGAGGAAGTGCAGCCATCAGCCCTGCCCTGCCAGGTGAGCCC-G-CCCC-------
i panTro5.chr15                  I 42241 C 0
s panPan2.chr15                   23062016 51 -  99763055 CAACAGAGGAAGTGCAGCGAGCAGCCCTGCCCTGCCAGGTGAGCCC-G-CCCC-------
i panPan2.chr15                  C 0 M 320
s nomLeu3.chr6_GL398151_2_random      9269 51 -     28805 CGCCAGAGGAAGTGCAGCGAGCAGCCGTGCCCTGCCAGGTGAGCCC-G-CCCC-------
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59996430 51 + 169600520 CGCCAGAGGAAGTGCAGT-AGCAGCCCTGCCCTGCCAGGTGAGCCC-GCCTCC-------
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61594353 52 + 171882078 TGCCAGAGGAAGTGCAGCGAGCAGCCCTGCCCTGCCAGGTGAGCCC-GCCCCC-------
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3917856 51 +   4820037 CGCCAGAGGAAGTGCAGCGAGCAGCCCTGCCCTGCCAGGTGAGCCC-A-CCCC-------
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9780393 51 +  10730278 CGCCAGAGGAAGTGCAGCGAGCAGCCCTGCCCTGCCAGGTGAGCCC-A-CCCC-------
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1322421 52 +  24206276 CGCCAGAGGAAGTGCAGCTAGCAGCCCTGCCCTGCCAGGTGAGCCC-GCCCCC-------
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3921503 51 +   4030761 CGCCAGAGGAAGTGCAGCGAGCAGCCCTGCCCTGCCAGGTGAGCCC-A-CCCC-------
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4027678 51 +   5013933 CGCCAGAGGAAGTGCAGCGAGCAGCCCTGCCCTGCCAGGTAAGCCC-G-CCCC-------
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748946 51 - 132174527 CGCCAGAGGAAGTGCAGCGAGCAGCCCTGCCCTGCCAGGTGAGCCG-C-CCCC-------
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   87082 52 -    125141 CGGCAGAGGAAGTGCAGTGAGCAGCCCTGCCCTGCGAGGTGAGCCACC-CCCC-------
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             95815 51 +  11725426 CGCCAGAGGCAGTGCAGCGAGCAGCCCTGCCCTGCCAGGTGAGCCG-C-CTCC-------
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            688892 51 +    730879 CGCCAGAGGAAGTGCAGCGAGCAGCCCTGCCCTGCCAGGTGAGCCG-C-CCCC-------
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5785132 51 -  36342412 CGCCAGCGGAAGTGCAGTGAGGAGCCCTGCCCTGCCAGGTGAGTCC-C-CCAC-------
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90191924 49 + 124595110 CGCCAGAGAAAATGCAGTGAGGAGCCCTGTCCCCCCAGGTGAGCTT-A-CT---------
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58215851 51 +  91889043 CGCCAGAGGAAGTGCAGTGAGGAGCCCTGCCCTGCCCGGTGAGCCC-A-CCCT-------
i canFam3.chr3                   C 0 I 4
s dasNov3.JH579681                  850282 58 +   1727078 CGTCACAGGAAGTGCAGCGAGGAGCCCTGCCCAGCTCGGTGAGCTC-C-CACCCTGACCA
i dasNov3.JH579681               C 0 C 0
e gorGor5.CYUI01015946v1            328300  0 -    378907 C

a score=58646.000000
s hg38.chr15_KI270850v1_alt          35873 12 +    430880 CATCCCCTACCA---
s panTro5.chr15                   59869113 12 +  83230942 CATCccccacca---
i panTro5.chr15                  C 0 I 233
s nomLeu3.chr6_GL398151_2_random      9320 12 -     28805 CATCCCCCACCA---
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59996481 12 + 169600520 ACTCCGCCACCA---
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61594405 12 + 171882078 ACTGTCCCGCCA---
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3917907 12 +   4820037 ACTCCCCCGCCA---
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9780444 12 +  10730278 ACTCCCCCGCCA---
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1322473 12 +  24206276 ACTGTCCCACCA---
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3921554 12 +   4030761 ACTCCCCCGCCA---
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4027729 12 +   5013933 ACTCCCCCACCA---
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113748997 12 - 132174527 ACTCCCCTGCCA---
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   87134 12 -    125141 ACGCCCCTACCA---
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             95866 12 +  11725426 ACACCCCTGCCA---
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            688943 12 +    730879 ACGCCCCTGCCA---
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5785183  2 -  36342412 ----------TA---
i otoGar3.GL873530               C 0 I 1
s mm10.chr9                       90191973 11 + 124595110 -GTCCCCAACCA---
i mm10.chr9                      C 0 I 1
s canFam3.chr3                    58215906 12 +  91889043 ACTGCCTGCACA---
i canFam3.chr3                   I 4 I 1
s dasNov3.JH579681                  850340 15 +   1727078 CTGCCCCTACCCCTA
i dasNov3.JH579681               C 0 C 0
e panPan2.chr15                   23062067 320 -  99763055 M
e gorGor5.CYUI01015946v1            328300  0 -    378907 C

a score=93814.000000
s hg38.chr15_KI270850v1_alt          35885 10 +    430880 -ACTCCCCACC
s panTro5.chr15                   59869358 10 +  83230942 -ACTCCCCACC
i panTro5.chr15                  I 233 C 0
s nomLeu3.chr6_GL398151_2_random      9332 10 -     28805 -ACTCCCCACC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59996493 10 + 169600520 -ACTCCCCACC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61594417 10 + 171882078 -ACTTCCCACC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3917919 10 +   4820037 -ACTCCCCACC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9780456 10 +  10730278 -ACTCCCCACC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1322485 10 +  24206276 -ACTTCCCACC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3921566 10 +   4030761 -ACTCCCCACC
i manLeu1.NW_012102632v1         C 0 M 516
s colAng1.NW_012114844v1           4027741 10 +   5013933 -ACTCCCCACC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113749009 10 - 132174527 -ACTCCCCACC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   87146 10 -    125141 -ACTCCCCACC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             95878 10 +  11725426 -ACTCCCCACC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            688955 10 +    730879 -ACTCCCCACC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5785186 10 -  36342412 -GCCCCTGATT
i otoGar3.GL873530               I 1 C 0
s mm10.chr9                       90191985 10 + 124595110 -ACCTCCAATT
i mm10.chr9                      I 1 C 0
s canFam3.chr3                    58215919 10 +  91889043 -GCTCCTGACT
i canFam3.chr3                   I 1 C 0
s dasNov3.JH579681                  850355 10 +   1727078 GGCTCCCGCC-
i dasNov3.JH579681               C 0 C 0
e panPan2.chr15                   23062067 320 -  99763055 M
e gorGor5.CYUI01015946v1            328300  0 -    378907 C

a score=343059.000000
s hg38.chr15_KI270850v1_alt          35895 60 +    430880 CCCAGGCATCCTGGGTCTGCC---ACAGGCCCCTACATCTGGG--TCCCCAGAGGCCCCAGGGAG
s panTro5.chr15                   59869368 60 +  83230942 CCCAGGCATCCTGGGTCTGCC---ACAGGCCCTTACATCTGGG--TCCCTGGAGGCCCTGGCGAG
i panTro5.chr15                  C 0 T 42032
s nomLeu3.chr6_GL398151_2_random      9342 60 -     28805 CCTAGGCATCCTGGGTCTGCC---ACAGGCCCCTGCATCTGGG--TCCCTGGAGGCTCCGGGGAG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59996503 60 + 169600520 CCCAGGCATCCTGGGTCTGCC---ACAGGCCCCTACATCTGGG--TCCCCGGGGGCCCTGGGGAG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61594427 59 + 171882078 CCCAGGTGTCCTG-GTCTGCC---ACAGGCCCCTACATCTGGG--TCCCCAGAGGCCCTGGGGAG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3917929 60 +   4820037 CCTAGGTGTCCTGAGTCTGCC---ACAGGCCCCTACATCTGGG--TCCCCAGAGGCCCTGGGGAG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9780466 60 +  10730278 CCTAGGTGTCCTGAGTCTGCC---ACAGGCCCCTACATCTGGG--TCCCCAGAGGCCCTGGGGAG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1322495 59 +  24206276 CCCAGGCGTCCTG-GTCTGCC---ACAGCCCTCTACATCTGGG--TCCCCAGAGGCCCTGGGGAG
i chlSab2.chr29                  C 0 C 0
s colAng1.NW_012114844v1           4027751 59 +   5013933 CCTAGGT-TCTTGAGTCTGCC---ACAGGCCCCTACATCTGGG--TCCCCAGAGGCCCTGGGGAG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113749019 59 - 132174527 CCCAGGTGGCCTGGGTCTGCC---ATAGGCCCCTACTTCTGGG---CCCCAGAGGCCCCAGGGAG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   87156 36 -    125141 CCCAGGCGGCCTGGGTCTGCC---AC--------------------------AGGCCCCAGGGAG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             95888 59 +  11725426 CCCAGGCGGCCTGGGTCTGCC---ACAGGCCCCTACTTCTGGG---CCCCAGAGTTCCCAGGGAG
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            688965 59 +    730879 CCCAGGCGGCCTGGGTCTGCC---ACAGGCCCCTACTTCTGGG---CCCCAGAGGCCCCAGGGAG
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5785196 36 -  36342412 CCTAGGCATCCTGAGCCTGCC---ACAGGCCCTTGCAGC--------------------------
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90191995 43 + 124595110 CCTAGGCATCCTGCTCCTGCCTCTGCAGACCCTGGTAGCTCAG----------------------
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58215929 50 +  91889043 CCCCGGT-CCCTGGCCTTGCT---GCAGAGCCC-ACATCTGGG----------GGCCTGTGAGAG
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  850365 61 +   1727078 CCCACGTGACCCAGTCCTGCT---TCCAGCCCCCACATCAGGAGAGCCCTGGAGACCCGGGGGG-
i dasNov3.JH579681               C 0 C 0
e panPan2.chr15                   23062067 320 -  99763055 M
e manLeu1.NW_012102632v1           3921576 516 +   4030761 M
e gorGor5.CYUI01015946v1            328300  0 -    378907 C

a score=332888.000000
s hg38.chr15_KI270850v1_alt          35955 48 +    430880 GAGCAGAGGGA-GCCGGGCTTTCATTC-TCTTCCCAAGGCTGAAGCCCCA
s panTro5.chr15                   59827396 49 +  83230942 GAGCAGAGGGACGCTGGGCTTTCATTC-TCTTCCGAAGGCTGAAGCTCca
i panTro5.chr15                  T 42032 I 42031
s nomLeu3.chr6_GL398151_2_random      9402 48 -     28805 GAGCAGAGGGA-GCCGGGCTCTCATTC-TCTTCCCAAAGCTGAAGCCCCA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59996563 48 + 169600520 GAGCAGAGGGA-GCCGGGCTTTCATTC-TCTTCCCAAGGCTGAAACCCCA
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61594486 48 + 171882078 GAGCAGAGGGA-GCTGGGCTTTCATTC-TCTTCCCAAAGCTGAAGCCCCA
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3917989 48 +   4820037 GAGCAGAGGGA-GCTAGGCTTTCATTC-TCTTCTCAAGGCTGAAGCCCCA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9780526 48 +  10730278 GAGCAGAGGGA-GCTGGGCTTTCATTC-TCTTCTCAAGGCTGAAGCCCCA
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1322554 48 +  24206276 GAGCAGAGGGA-GCCGGGCTTTCATTT-TCTTCCCAAAGCTGAAGCCCCA
i chlSab2.chr29                  C 0 C 0
s colAng1.NW_012114844v1           4027810 48 +   5013933 GGGCAGAGGGA-GCCAGGCTTTCATTC-TCTTCCCAAGGCTGAAACCCCA
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113749078 49 - 132174527 GAGCACAGGCA-GCCAGGTTTTCACGGATCTTTCCAAGGCTGAAGCCCCA
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   87192 49 -    125141 GACCACAGGCA-GCCAGGTTTTCACAGGTCTTCCCAAGGCTGAAGCCCCA
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             95947 49 +  11725426 AAGCAGAGGCA-GCCAGGTTTTCACGGGTCTTCCCAAGGCTGAAGCCCCA
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            689024 48 +    730879 GAGCAGAGGCA-GCCGGGTTTTCACTG-TCTTCCCAAGGCTGAAGCCCCA
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5785232 38 -  36342412 ----------A-GCCAGGCTTCTGGCC-TCTTCCCAAGGCTAAATCCCCA
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90192038 41 + 124595110 GAGAAGAGAAA-GT--GGCTTC------TTTTCCCAAGTCCATGGACCTA
i mm10.chr9                      C 0 I 4
s canFam3.chr3                    58215979 46 +  91889043 GAGCAGAGGGA-GCACGGCCT--GGCC-TCTGTACAAGGCTGAAGCCCAG
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  850426 39 +   1727078 CTGCAAAGAAA-GCCCAGC---------TCTTCCCAGAG-TGAAGGCCTG
i dasNov3.JH579681               C 0 C 0
e panPan2.chr15                   23062067 320 -  99763055 M
e manLeu1.NW_012102632v1           3921576 516 +   4030761 M
e gorGor5.CYUI01015946v1            328300  0 -    378907 C

a score=286553.000000
s hg38.chr15_KI270850v1_alt          36003 50 +    430880 ACCCCCGG---TCACCTCTCACC----------C------------C----------------------------AGCCTGGGC---------CAGCCT-GGACACCTATGGT
s panTro5.chr15                   59869476 50 +  83230942 ACCCCCGG---TCACCCCTCACC----------C------------C----------------------------AGCCTGGAC---------CAGCCT-GGACACCTGTGGT
i panTro5.chr15                  I 42031 C 0
s nomLeu3.chr6_GL398151_2_random      9450 50 -     28805 ACCCCGGG---TCACCCCTCACC----------C------------C----------------------------AGCCTAGGC---------CAGCCC-GGATACCTGTGGt
i nomLeu3.chr6_GL398151_2_random C 0 I 153
s rheMac8.chr7                    59996611 49 + 169600520 GCCCCCAG---TC-CCCGTCACC----------C------------C----------------------------AGCCTGGGC---------CAGCCT-GGACACCTGTGGT
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61594534 50 + 171882078 GCCCCCAG---TCACCCCTCACC----------C------------C----------------------------AGCCTGGGC---------CAGCCT-GGACACCTGTGGT
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3918037 50 +   4820037 GCCCCCGG---TCACCCCTCACC----------C------------C----------------------------AGCCTGGGC---------CAGCCT-GGACACCTGTGGT
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9780574 50 +  10730278 GCCCCCGG---TCACCCCTCACC----------C------------C----------------------------AGCCTGGGC---------CAGCCT-GGACACCTGTGGT
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1322602 49 +  24206276 GCCCCCAG---TCACCCCTCACC----------C------------C----------------------------AGCCTGGGC---------CAG-CT-GGACACCTGTGGT
i chlSab2.chr29                  C 0 C 0
s colAng1.NW_012114844v1           4027858 50 +   5013933 GCCCCCGG---TCTCCCCTCACC----------C------------C----------------------------AACCTGAGC---------CAGCCT-GGACACCTGTGGT
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113749127 50 - 132174527 GCTCCCGG---TCACCCCTTACT----------C------------C----------------------------AGCCTGGGC---------CAGCCT-GGACACCTGTGTT
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   87241 39 -    125141 ACT-CTGG---TCACCCCTTACT------------------------------------------------------------C---------CAGCCT-GGACACCTGTGGT
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             95996 50 +  11725426 GCTCCCGG---TCACCCCTTACC----------C------------C----------------------------AGCCTGGGC---------CAGCCT-GGACACCTGTGGT
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            689072 60 +    730879 GCTCCCGG---TCACCCCGTACTccagcctgggc------------c----------------------------agcctgggc---------cagcct-ggACACCTGTGGT
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5785270 76 -  36342412 -GGGCTGG---CTGCCCCCCATC----------C------------CCA-GCTAGGGTCTGGAATGACACTGTGTAGCCAGCAC---------CAGACT-GGATACTTCTGGT
i otoGar3.GL873530               C 0 I 1
s mm10.chr9                       90192083 48 + 124595110 GTTTCTGGAGTGCACTGGGCACC----------C------------C----------------------------A-----TAC---------CAGCCT-AGATGCCCCTGAT
i mm10.chr9                      I 4 I 2
s canFam3.chr3                    58216025 66 +  91889043 -ACCCTGG---TTCTTCCTCCCC----------C------------CCCTGCCCCGCCCCGGC------------AGCCAGCAC---------CAGCCTAAGACATGCCTGGT
i canFam3.chr3                   C 0 I 2
s dasNov3.JH579681                  850465 71 +   1727078 -GCCCTGG---CCGTCCCCCACC----------CGTCGGTGCTGAGC----------------------------ACCCGGGGCAGCAAGCAGCAGCCTTAGACCCCCCTGGT
i dasNov3.JH579681               C 0 C 0
e panPan2.chr15                   23062067 320 -  99763055 M
e manLeu1.NW_012102632v1           3921576 516 +   4030761 M
e gorGor5.CYUI01015946v1            328300  0 -    378907 C

a score=19637.000000
s hg38.chr15_KI270850v1_alt          36053 4 +    430880 -CCTC
s panTro5.chr15                   59869526 4 +  83230942 -CCTC
i panTro5.chr15                  C 0 C 0
s rheMac8.chr7                    59996660 4 + 169600520 -CCTC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61594584 4 + 171882078 -CCTC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3918087 4 +   4820037 -CTTC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9780624 4 +  10730278 -CCTC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1322651 4 +  24206276 -CCTC
i chlSab2.chr29                  C 0 C 0
s colAng1.NW_012114844v1           4027908 4 +   5013933 -CCTC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113749177 4 - 132174527 -CCTC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   87280 4 -    125141 -CCTC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             96046 4 +  11725426 -CCTC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            689132 4 +    730879 -CCTC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5785347 4 -  36342412 -ACTC
i otoGar3.GL873530               I 1 C 0
s mm10.chr9                       90192133 3 + 124595110 -CTT-
i mm10.chr9                      I 2 C 0
s canFam3.chr3                    58216093 2 +  91889043 -CC--
i canFam3.chr3                   I 2 I 1
s dasNov3.JH579681                  850536 5 +   1727078 CACTC
i dasNov3.JH579681               C 0 C 0
e panPan2.chr15                   23062067 320 -  99763055 M
e manLeu1.NW_012102632v1           3921576 516 +   4030761 M
e nomLeu3.chr6_GL398151_2_random      9500 153 -     28805 I
e gorGor5.CYUI01015946v1            328300 0 -    378907 C

a score=244795.000000
s hg38.chr15_KI270850v1_alt          36057 40 +    430880 CTCTTTGGGTCCCTGGATGTGGAA---------ATAGGCCTCAGGTCAT
s panTro5.chr15                   59869530 40 +  83230942 CTCTTTGGGTCCCTGGATGTGGAA---------ATAGCCCTCAGTTCAT
i panTro5.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      9653 40 -     28805 ctcaTTGGGTCCCTGGATGTGGAA---------ATACGCCTCAGGTCGT
i nomLeu3.chr6_GL398151_2_random I 153 C 0
s rheMac8.chr7                    59996664 39 + 169600520 CTCTTTGGGCCCCTGGATGTGGAA---------ATAGGCCTCAGGTCA-
i rheMac8.chr7                   C 0 I 1
s macFas5.chr7                    61594588 38 + 171882078 CTCTTTGGGTCCCTGGAT-TTGAA---------GTAGGCCTCAGGTCA-
i macFas5.chr7                   C 0 I 1
s macNem1.NW_012011533v1           3918091 40 +   4820037 CTCTTTGGGTCCCTGGATGGGGAA---------ATAGGCCTCAGATCAG
i macNem1.NW_012011533v1         C 0 I 65
s cerAty1.NW_011999477v1           9780628 40 +  10730278 CTCTTTGGGTCCCTGGATGGGGAA---------ATAGGCCTCAGATCAG
i cerAty1.NW_011999477v1         C 0 I 64
s chlSab2.chr29                    1322655 39 +  24206276 CTCTTTGGGTCCCTGGAT-TTGAA---------GTAGGCCTCAGGTCAC
i chlSab2.chr29                  C 0 C 0
s colAng1.NW_012114844v1           4027912 40 +   5013933 CTCTTTGGGTCCCTGGATGGGGAA---------ATAGGCCTCAGATCAG
i colAng1.NW_012114844v1         C 0 I 8
s calJac3.chr10                  113749181 40 - 132174527 CTCCTTAGGCCCCTGGATATGGAA---------ATAGGCCTCAGGTCAC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   87284 40 -    125141 CTCCTTAGGTCCCTGGATATGGAA---------ATAGGCCTCAGGTGAT
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             96050 40 +  11725426 CTCCTTAGGCCCCTGGATGTGGAA---------ATAGGCCTCAGGTCAC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            689136 49 +    730879 CTCCTTAGGCCCCTGGATATGGAAATAGGCCTCATAGGCCTCAGGTCAC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5785351 40 -  36342412 TTCTTTGGGTCCCTGGATATGTAC---------ATTGGCCTCAGGTCTT
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90192136 29 + 124595110 GTCTTTGGATCTCTGGAT----AC---------CTTGGC--CAG-----
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58216096 30 +  91889043 GTGTTTGGGTTTTGGGA---GGGC---------TCAGGATTT-------
i canFam3.chr3                   I 1 C 0
s dasNov3.JH579681                  850541 34 +   1727078 CTCTCTGGGTCCCTGGAC---------------ACAGACCTCAAGGCCT
i dasNov3.JH579681               C 0 C 0
e panPan2.chr15                   23062067 320 -  99763055 M
e manLeu1.NW_012102632v1           3921576 516 +   4030761 M
e gorGor5.CYUI01015946v1            328300  0 -    378907 C

a score=1496685.000000
s hg38.chr15_KI270850v1_alt          36097 192 +    430880 GCTCAGTTTCCCTGAGGGGAAGG-----TGGCAGGAGTGGA---------------GGGG---CTGTGCCTTGTCACCAGACT--------TTGAGGG------------------------------------CAGGACACTTACCTGAG-CTTGGAGCTCTGGAGAATCATCCACTGGCTTCTG-----GCACTGCCCAAACCCCGAGGGCCTGGAA----ACCCAGCCTGGCCCTCCCTGCTGGTGAGCC-TGTCAATGCCACCTGT
s panTro5.chr15                   59869570 195 +  83230942 GCTCAGTTTCCCTGAGGGGAGGG-----TGGCAGGAGCGGA---------------GGGG---CTGTGCCATGTCACCAGGCT--------TTGAGGG------------------------------------CAGGACACTTACCTGAG-CTTGGAGCTCTGGAGAATCAACCACTGGCCTCAGTCCCAGCTCTACCCAAACGCCGAGGGCCTGGAA----GCCCAGCCTGGCCCTCCCTGCTGGTGAGCC-TGC--AGGCCACCTGT
i panTro5.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      9693 195 -     28805 GCTCAGTTTCCCTGAGGGGAGGG-----TGGCAGGAGCGGA---------------GGGA---CTGTGCCATGTCACCAGGCT--------TTGAGGG------------------------------------TATGAAACTTACCTGGG-CTTGGAGCTCTGGAGAATCAACCACTGGCCTCAGTCCCAGCTCTACCCAAACCCCAAGGGCCTGGAA----GCCCAGCCTGGCCCTCCCTGCTGGTGAGCC-TGC--AGGCCACCTGT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59996704 197 + 169600520 ACTCAGTTTCCCTGAGGGGAGGG-----TGGCAGGAGTGGA---------------GGGG---CTGTGCCATGTCACCAGGCT--------TTGAGGG------------------------------------CAGGACACTTACCTGGG-CTTGGAGCTCTGGAGAATCATCCACTGGCCTCAGTCCCAGCTCTGCCCAAACCCTGAGGGCCTGGAA----GCCCAGCCTGGCCCTCCCTGTTGGTGAGCC-TGCTGATGCCACTCAT
i rheMac8.chr7                   I 1 C 0
s macFas5.chr7                    61594627 197 + 171882078 ACTCAGTTTCCCTGAGGGGAGGG-----TGGCAGGAGCGGA---------------GGGG---CTGTGCCATGTCACCAAGCT--------TTGAGGG------------------------------------CAGGACACTTAACTGGG-CTTAGAGCTCTGGAGAATCATCCACTGGCCTCAGTCCCAGCTCTGCCCAAGCCCTGAGGGCCTGGAA----GCCCAGCCTGGCCCTCCCTGCTGGTGAGCC-TGCTGATGCCACTCAT
i macFas5.chr7                   I 1 C 0
s macNem1.NW_012011533v1           3918196 185 +   4820037 GCTCAGTTTCCCTGAGGGGAGGG-----TGGCAGGAATGGA---------------GGAG---CTGTGCCATGTCACCAGGCT--------TTGAGGG------------------------------------CAGGACACTTACCTGGG-CTTGGAGCTCTGGAGAATCATCCACTGGCCTCAGTCCCAGCTCTGCCCAAACCCTGAGGGCCTGAAA----GCCCAGCCTGGCCCTCCCTGCTGG-------------TGCCATCCAT
i macNem1.NW_012011533v1         I 65 C 0
s cerAty1.NW_011999477v1           9780732 185 +  10730278 GCTCAGTTTCCCTGAGGGGAGGG-----TGGCAGGAATGGA---------------GGAG---CTGTGCCATGTCACCAGGCT--------TTGAGGG------------------------------------CAGGACACTTTCCTGGG-CTTGGAGCTCTGGAGAATCATCCACTGGCCTCAGTCCCAGCTCTGCCCAAACCCTGAGGGCCTGGAA----GCCCAGCCTGGCCCTCCCTGCTGG-------------TGCCATCCAT
i cerAty1.NW_011999477v1         I 64 C 0
s chlSab2.chr29                    1322694 189 +  24206276 ACTCAGTTTCCCTGAGGGGAGGG-----TGGCAGGAGTGGA---------------GGGG---TTGTGCCATGTCACCAAGCT--------TTGAGGG------------------------------------CAGGACACTTAACTGGG-CTTGGAGCTGTGGAGAATCATCCACTGGCCTCAGTCCCAGCTCTGCCCAAAC--------TCTGGAA----GCCCAGCCTGGCCCTCCCTGCTGGTGAGCC-TGCTGATGCCACTCAT
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3922099 185 +   4030761 GCTCAGTTTCCCTGAGGGGAGGG-----TGGCAGGAATGGA---------------GGAG---CTGTGCCATGTCACCAGGCT--------TTGAGGG------------------------------------CAGGACACTTACCTGGG-CTTGGAGCTCTGGAGAATCATCCACTGGCCTCAGTCCCAGCTCTGCCCAAACCCTGAGGGCCTGGAA----GCCCAGCCTGGCCCTCCCTGCTGG-------------TGCCATCCAT
i manLeu1.NW_012102632v1         M 516 C 0
s colAng1.NW_012114844v1           4027960 241 +   5013933 GGGAAGTTTCCCTGAGGGGAGGG-----TGGCAGGAACGGA---------------GGGG---CTGTGCCATGTCATCAGGCTCAGTTTCCCTGAGGGGAGGGTGGCAGGAATGGAGGAGCTGTGCCATGTCACCAGGACATTTACCTGGG-CTTGGAGCTCTGGAGAATCATCCACTGGCCTCAGTCCCCGCTCTGCCCAAACCCTGAGGGCCTGGAA----GCCCAGCCTGGCCCTCCCTGCTGGTGAGCC-TGCCGGTGCCACCCAT
i colAng1.NW_012114844v1         I 8 C 0
s calJac3.chr10                  113749221 183 - 132174527 TCTCAGTTCCCCTGAGGAGAGGG-----TGGTAGGAGTTGA---------------GGGG---CTGGGCCATGTTACCAGACT--------TAGGGGG------------------------------------CAGGACACCTACCTGGG-CTTGGAGCTCTGGAGAAGCAGCCACTGGCCTCGGTCCCAGCTCTGCCCAAACCCTGAGGGCCTGGGA----GCCCGGCCTGGCCCTCCCTGCTGGTGAGAC-TG--------------
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   87324 196 -    125141 GCTCACTTCCTCTGAGGGGAGGG-----TGGCAGGAGCAGC---------------GGGG---CTGGGCCATGTCACCAGACT--------TAGGGGG-------------------------------------AGGACGCCTACCTGGG-CTTGGAGCTCTGGAGAAGCAGCCACTGGCTTTGGTCTCAGCTCTGCCCAAACCCCAAGGGCCTGGGA----GCCCAGCCTGGCCCTCCCTGCTGGTGAGCC-TACCGATGCCATCTGT
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             96090 196 +  11725426 GCTCACTTCCCCTGAGGGGAGGG-----TGGCAGGAGCGGA---------------GGGG---CTGGGCCGTGTCACCAGACT--------TAGGGGG-------------------------------------AGGATACCTACCTGGG-CTTGGAGCTCTGGAGAAGCAGCCACTGGCCACAGTCCCAGCTCTGCCCAAACCTCGAGGGCCTGGGA----GCCCGGCCTGGCCCTCCCTGCCGGTGAGCT-TGCCGATGCCATCCGT
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            689185 197 +    730879 GCTCACTTCCCCTGAGGGGAGGG-----TGGCAGGAACGGA---------------GGCG---CTGGGCCATGTCACCAGACT--------TAGGGGG------------------------------------CAGGACACCTACCTGGG-CTTGGAGCTCTGGAGAAGCAGCCCCTGGCCTCGGTCCCAGCTCTGCCCAAACCCTGAGGGCCTGGGA----GCCTGGCCTGGCCCTCCCTGCTGGTGAGCC-TGCCAATGCCACCCGT
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5785391 189 -  36342412 ACCCACCACCCCTGGGGTAAGGG-----TGG-AAGAATGGA---------------GGAGGTTGTGTGTCATGTCACTAGACT--------TCAGGGG------------------------------------CGGGCCACTGACATGGG-CTTGGGGCTCTGAAGAGCTATATGCTGGATCTGGTCCAGGCTCTGCTTGTACCCTGAGGGCCTGGG----------TCCTGGCCCTTGCT----GTGGGCC-TATTAGTGCCACCTGT
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90192165 188 + 124595110 -------GTCCCAGGGGGTAAGGGTTGTTGGTGGTAGTGAA---------------GAGG-------GCTCTGCCACTGGGTT--------TCAGGGG------------------------------------CAGGGCACTGACTTGGGACTTGGCTTGCTGGGGTTTC--------TCCTCCAT-TCAGGTTTGTCTGCACCCCATTGGCCTGGAGCCTTGTATGGCATGGGCATCTTTGCTCGTGAACCTTGCTCATGATAGGTGT
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58216126 165 +  91889043 -GCCAGTTCCCCC-CGGCGAGGG-----TGGCAGGAGCAAA--------------TGGGG---CTATGTCCTGCCACCGGGCC--------TCGGGGG-----------------------------------TCAGGTTGCCGACC-GGG-CTCAGGGCTCTGGGGAATCGTCCCCTGGGCTTGGGCCTGGCCCTGCCTGGAGCCTGAGAGCCCGGGC----ATCCAGCCAG-----CCCTG---------------------------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  850575 173 +   1727078 -GTCAGCTTCCCTGGGGTGAGGG-----TGGCAGAGTTTGAACCCAGGCCTCCCTGGCGA---TGGGGCAATGCCACAAGGCA------------GGG------------------------------------CA------CCCCCTCGG-TTGGGAGCTCTAGGGGATCATCCTCTGGGCTCAAG-CTGACCCTACCCAAACTCTGAGTGCCTGGGG----GCCC-GCTGAGTCCCACCTG---------------------------
i dasNov3.JH579681               C 0 C 0
e panPan2.chr15                   23062067 320 -  99763055 M
e gorGor5.CYUI01015946v1            328300   0 -    378907 C

a score=326631.000000
s hg38.chr15_KI270850v1_alt          36289 35 +    430880 CTGATGCCATACTGATGACACCTGTGTGCCCTCAG
s panTro5.chr15                   59869765 35 +  83230942 CTGATGCCACACTGATGCCACCTGTGTGCCCTCAC
i panTro5.chr15                  C 0 T 41958
s panPan2.chr15                   23062398 35 -  99763055 CTGATGCCACACTGATGCCACCTGTGTGCCCTTGC
i panPan2.chr15                  M 320 C 0
s nomLeu3.chr6_GL398151_2_random      9888 35 -     28805 CTGATGCCACACTGATGCCACCTGTGTGCCCTCAC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59996901 35 + 169600520 CTGATGCCACAGTGATGCCACCCATGTGCCCTCAC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61594824 35 + 171882078 CTGATGCCACGGTGATGCCACCCATGTGCCCTCAC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3918381 35 +   4820037 CTGATGCCATGCTGATGCCACCTGTGTGCCCTCGC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9780917 35 +  10730278 CTGATGCCATGCTGATGCCACCTGTGTGCCCTCGC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1322883 35 +  24206276 CTGATGCCATAGTGATGCCACCCATGTGCCCTCAC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3922284 35 +   4030761 CTGATGCCATGCTGATGCCACCTGTGTGCCCTCGC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4028201 35 +   5013933 CTGATGCCATGCTGATGCCACCTGTGTGCCCTCAC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113749404 35 - 132174527 CTGATGCCACACTGATGCCACCCGTGTGCCTTTGC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   87520 35 -    125141 CTGATGCCACGCTGATGCCACCTGTGTGCCCTTGC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             96286 35 +  11725426 CTGACGCCACGCTGATGCCACCCGTGTGCTGTTGC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            689382 35 +    730879 CTGATGCCATGCTGATGCCACCCGTGTGCCCTTGC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5785580 24 -  36342412 -----------CTGATGTCACCCGTGTGCCTCCTG
i otoGar3.GL873530               C 0 I 1
s mm10.chr9                       90192353 24 + 124595110 -TCATGTCACCCTGTTACCGCTTAC----------
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58216291 23 +  91889043 ----------GCTGACGAGGCCTGTGTGCCCTG--
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  850748 21 +   1727078 --------------ATGCCACCTGTGCGCCCCCAC
i dasNov3.JH579681               C 0 C 0
e gorGor5.CYUI01015946v1            328300  0 -    378907 C

a score=4960092.000000
s hg38.chr15_KI270850v1_alt          36324 440 +    430880 CAGGTGGTGGGCAGGTGAGTGGCAGCTG-TGCTCCAGCTCCTGCGGGCCTGGGGGCCTCTCCTGCCAGGCTGTGCTCT-GCATCCGCAGCGTGGGGCTGGATGAGC-AGAGCGCCCTGAAGCCAC-CCGCCTGTGAACACCTTCCCCGGCCCCCTACTGAAACCCCTTGCAACC-ACCATGTGCCCTGTCCGGCCACGTAGGCTGTGGGGAACTGGTCTCAGGTGAGTG-T-GGGA-TGGGA-AGGTG----------------------CCCGCCTCCA---GCCCCACCCTTGGTCTTCAGCT-ACAGGGAG--GC-AGACA--GCCTTCCTGGAGACCT-------------TGTGGGTGGGAGGGA--ACCTGG---GCATTCCAGGGTCCAGCC-CCTGACTCTAAAGCCTCAGGGATCAGGAA--GCCCCTGGCAAG-CAT-GGCCAC-AGTCATGGCCTTGAGCTGGGAAGGGCCAGAGAGGGCTGGCTGGGGTCTC
s panTro5.chr15                   59827842 439 +  83230942 CAGGTGGTGGGCAGGTGAGTGGCAGCTGTTGCTCAGCTTCCTGCGGGGCT-GGGGCCTCTCCTGCCGCGC-GTGCTGTGGCATCCGCAGCAAGGGGCTCGATGAGCGAGAGTGGCTTGGAGCCACACCCCCTGTG---ACCTTTTCTCGCCCTCTACTGAAA-CGCTTGCAACCTGCCATGT-CCCTGTCTGGCTACCTGGGCTGTGGGG-ACTGGTTTCAGTTGAGCG-T--GGA-TGGGAGAGGGG----------------------CCCACCTCCA---GCTCCACCCTTGGTCTTCGGCTAACCGGGAG--GCAAGACA--GCCTTCCTGGAGCCTC-------------GGTGGGTGGGAAGGA--GTCTGG---GTATTCCAGGGTCCAGCCGCCTGACT---AAACCTCAGGGATCAGGAAGCGCGCCTGGCAAG-CATGGGTCAT-AGTCATGGCCTC-AGCTGGGCAGGGCCGGAGAGGGCTGGCTGGGGTCTC
i panTro5.chr15                  T 41958 I 41934
s panPan2.chr15                   23062433 440 -  99763055 CAGGTGGTGGGCAGGTGAGTGGCAGCTG-TGCTCCAGCTCCTGCGGGCCTGGGGGCCTCTCCCGCCGGGCCGTGCTCTAGCATCCGCAGC-TGGGGCTGGATGAGC-AGAGCGCCCTGGAGCCAC-CTGCCTGTGAACACCTTCCCCGGCCCCCTACTGAAACCCCTTGCAACC-GCCATGTACCCTGTCCGGCCACCTGGGCTGTGGGGAACTGGTCTCAGGTGAGTG-T-GGGA-TGGGA-GGGGG----------------------CTGACCTTCA---GCTCCACCCTTGGTCTTCGGCT-ACAGGGAG--GC-GGACA--GCCTTCCTGGAGCCCT-------------CGTGGGTGGGAGGGA--GCCTGG---GCATTCCAGGGTCCAGCC-CCTGACTCTAAAGCCTCAGGGATCAGGAA--GCCCCTGGCAAG-CAT-GGCCAC-AGTCATGGCCTTGAGCTGGGCAGGGCCAGAGAGGGCTGGCTGGGGTCTC
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random      9923 440 -     28805 CAGGTGGTGGGCAGGTGAGTGGCAGCTG-TGCTCCAGCTCCTGCGGATCTGGGGGCCTCTCCCGCCGGGCTGTGCTCT-GCATCCGCAGCGTGGGGCTGGATGAGC-AGAGTGCCTTGGAGCCAC-CCGCCTGTGAACACCTGCCCCAGCCCCCTACTGAAACCCCTTGCAACC-GCCATGTGCCCTGTCCGGCCACCTGGGCTGTGGGGAACTGGTCTCAGGTGAGTG-T-GGGA-TGGGA-GGGGG----------------------CCCACCTCCA---GCTCCACCCTTGGTCTTCGGCT-ACAGGAAG--GC-AGACA--GCCTTCCTGGAGCCCT-------------TGTGGGTGGGAGAGA--GCCTGG---GCATTCCAGGGTCTAGCC-CCTGACTCTAAAGCCTCAGGGATCAGGAA--GCCCCTGGCAAG-TGT-GGCCAC-AGCCGTGGCCTTGAGCTGGGCAGGGCCAGAGAGGGCTGGCTGGGGACTC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59996936 437 + 169600520 CAGATGGTGGGCAGGTGAGTGGCAGCTG-TGCTCCAGCTCCTGTGGGCCTGGGGGCCTCTCCTGCCGGGCCATGCTCT-GCATCC-CAGCATGGGGCTGGATGAAC-AGAGTGCCCTGGAGCCCC---GCCTGTGAACACCTTCCCTGGACCCCTACTGAAACCCATTGAAACC-GCCATGTGCCCTGTCCGGCCACCTGGGCTGTGGGGAACTGGTCTTAGGTGAGTG-T-GGGA-TGGGA-GGGGG----------------------CTCGCCTCCA---GCTCCACCCTTGGTCTTTGGCT-ACAGGTAG--GC-AGACA--GCCTTCCTGGAGCCCT-------------CGTGGGTGGGAGGGA--GCCTGG---GCATTCCAGGGTCCAGCC-CCTGACTCTAAAGCCTCAGGGATCAGGAA--GCCCCTGGCAAG-CAT-GTCCAC-AGCCATGGCCTTGAGCTGGGCAGGACCAGAGAGGGCTGGCTGGGGTCTC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61594859 430 + 171882078 CAGGTGGTGGGCAGGTGAGTGGCAGCTG-TGCTCCAGCTCCTGTGGGCCTGGGGACCTCTCCGGCCAGGCCGGGCTCT-GCATCTGCACTGTGGGGCTGGATGAGC-AGAGTGCCCTGGAGCCAC-CCGCCTGTGAACACCTTCCCCGGCCCCCTACTGAAACCCATTGAAACT-GCCATGTGCCCTGTCCGGCCACCTGGGCTGTGGGGAACTGGTCTGAGGTGAGTG-T-GGGA-TAGGA-GGGGG----------------------CCCGCCTCCA---GCTCCACCCTTGGTCTTTGGCT-ACAGGTAG--GC-AGACA--GCCTTCCTGGAGCCCT-------------CGTGGGTGGGAGGGA--GCCTGG---GCATTCCAGGGTCCAGCC-CCTGACTCTAAAGCCTCAGGGATCAGGAA--GCCCCTGGCAAG-CAT-GTCCAC-AGCCATGGCCTTGAGCTGGGC----------AGGGCTGGCTGGGGTCTC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3918416 440 +   4820037 CAGGTGGTGGGCAGGTGAGTGGCAGCTG-TGCTCCAGCTCCTGTGGGCCTTGGGGCCTCTCCCACCGGGCCGTGCTCT-GCATCCGCAGCGTGGGGCTGGATGAAC-AGAGCGCCCTGGAGCCCC-CGGCCTGTGAACACCTTCCCCAGCCCCCTACTGAAACCCCTTGCAACC-GCCATGTGCCCTGTCCGGCCACCTGGGCTGTAGGGAACTGGTCTCAGGTGAGTG-T-AGGA-TGGGA-GGGGG----------------------CCTGCCTCCA---GCTCCACCCTTGGTCTTCGGCT-ACAGATAG--GC-AGACA--GCCTTCCTGGAGCCTT-------------CGTGGGTGGGAGGGA--GCCTGG---GCATTCCAGGGTCCAGCC-CCTGACTCTAAAGCCTCAGGGATCAGGAA--GCCCCCGGCAAG-CAT-GTCCAC-AGCCATGGCCTTGAGCTGGGCAGGACCAGAGAGGGCTGGCTGGGGTCTC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9780952 440 +  10730278 CAGGTGGTGGGCAGGTGAGTGGCAGCTG-TGCTCCAGCTCCTGTGGGCCTTGGGGCCTCTCCCACCGGGCCGTGCTCT-GCATCCGCAGCGTGGGACTGGATGAAC-AGAGCGCCCTGGAGCCCC-CGGCCTGTGAACACCTTCCCCGGCCCCCTACTGAAACCCCTTGCAACC-GCCATGTGCCCTGTCCGGCCACCTGGGCTGTAGGGAACTGGTCTCAGGTGAGTG-T-AGGA-TGGGA-GGGGG----------------------CCTGCCTCCA---GCTCCACCCTTGGTCTTCGGCT-ACAGATAG--GC-AGACA--GCCTTCCTGGAGCCTT-------------CGTGGGTGGGAGGGA--GCCTGG---GCATTCCAGGGTCCAGCC-CCTGACTCTAAAGCCTCAGGGATCAGGAA--GCCCCTGGCAAG-CAT-GTCCAC-AGCCATGGCCTTGAGCTGGGCAGGGCCTGAGAGGGCTGGCTGGGATCTC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1322918 430 +  24206276 CAGGTGGTGGGCAGGTGAGTGGCAGCTG-TGCTCCAGCTCCTGTGGGCCTGGGGACCTCTCCAGCCAGGCCGTGCTCT-GCATCCGCACTGTGGGGCTGGATAAGC-AGAGCGCCCTGGAGCCAC-CCGCCTGTGAACACCTTCCCCAGCCCCCTACTGAAACCCATTGAAACT-GCCATGTGCCCTGTCCGGCCACCTGGGCTGTGGGGAACTGGTCTCAGGTGAGTG-T-GGGA-TAGGA-GGGGG----------------------CCCGCCTCCA---GCTCCACCCTTGGTCTTTGGCT-ACAGGTAG--GC-AGACA--GCCTTCCTGGAGCCCT-------------CGTGGGTGGGAGGGA--GCCTGG---GCATTCCAGGGTCCAGCC-CCTGACTCTAAAGCCTCAGGGATCAGGAA--GCCCCTGGCAAG-CAT-GTCCAC-AGCCATGACCTTGAGCTGGAC----------AGGGCTGGCTGGGGTCTC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3922319 440 +   4030761 CAGGTGGTGGGCAGGTGAGTGGCAGCTG-TGCTCCAGCTCCTGTGGGCCTTGGGGCCTCTCCCACCGGGCCGTGCTCT-GCATCCGCAGCGTGGGGCTGGATGAAC-AGAGCGCCCTGGAGCCCC-CGGCCTGTGAACACCTTCCCCGGCCCCCTACTGAAACCCCTTGCAACC-GCCATGTGCCCTGTCCAGCCACCTGGGCTGTAGGGAACTGGTCTCAGGTGAGTG-T-AGGA-TGGGA-GGGGG----------------------CCTGCCTCCA---GCTCCACCCTTGGTCTTTGGCT-ACAGATAG--GC-AGACA--GCCTTCCTGGAGCCTT-------------CGTGGGTGGGAGGGA--GCCTGG---GCATTCCAGGGTCCAGCC-CCTGACTCTAAAGCCTCAGGGATCAGGAA--GCCCCTGGCAAG-CAT-GTCCAC-AGCCATGGCCTTGAGCTGGGCAGGGCCAGAGAGGGCTGGCTGGGATCTC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4028236 440 +   5013933 CAGGTGGTGGGCAGGTGAGTGGCAGCTG-TGCTCCAGTTCCTGTGGGCCTTGGGGCCTCTCCCAGCGGGCCGTGCTCT-GCATCCGCAGTGTGGGGCTGGATGAGC-AGAGTGCCCTGGAGCCCC-CCGCCTGTGAACACCTTCCCCGGCCCCCTACTGAAACCCCTTGCAACC-GCCATGTGCCCTGTCCGGCCACCTGGGCTGTGGGGAACTGGTCTCAGGTGAGTG-T-GGGA-TGGGA-GGGGG----------------------CCCGCCTCCA---GCTCCACCCTTGGTCTTCGGCT-ACAGATAG--GC-AGACA--GCCTTCCTGGAGCCTT-------------CGTGGGTGGGAGGGA--GCCTGG---GCATTCCAGGGTCCAGCC-CCTGACTCTAAAGCCTCAGGGATCAGGAA--GCCCCTGGCAAG-CAT-GTCCAC-AGCCATGGCCTTGAGCTGGACAGGGCCAGAGAGGGCTGGCTGGGATCTC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113749439 453 - 132174527 CAGGTGGTGGGCAGGTGAGTGGCAGCTG-TGCTCAAGCTCCTGTGGGCCTAGGGGCCTTTCCCGCCGGGCCGTGCTCT-GCATCCACAGCGTGGGGCTGGATGAAC-AGAGCGCCCTGGAGCCGC-TGGCCTGTGAACACCTTCCCCAGCCCCCGGCTGAAACCCCCTGCAACC-GCCATGTGCCCTGTCCGGCCACCTGGGCTGTGGGGAACTGGTCTCAGGTGAGTG-T-GGGA-TGGGA-GGGG------------------------CCGCCTCCA---GCGCTACCCTTGGTCTCAGGCT-ACAGCGAG--GC-AGACA--GCCTTCCTCCAGCCCTTACTGCCTGGTACCATGGGTGGGAGGGA--GTCTGG--AGCATTCCAGGGTCCAGCC-TCTGACTCCAAAGCCTCAGGGATCAGAAA--GCCCCTGGGAAGCCAT-GGCCAT-AGCCATGACCTTGAGCGGGGTAGGGCCAGAGAGGGCTGGCTGGGGTCCC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   87555 449 -    125141 CAGGTGGTGGGCAGGTGAGTGGCGGCTG-TGCTCCAGCTCCTGTGGGCCTAGGGGCATCTCCCGCCGGGCCGTGCTCT-GCATCCGCAGCGTGGGGCTGGATGAGC-AGAGCGCCCTGGAGCCGC-CCGCCTGTGAACACCTTCCCCGGCCCCCGGCTGAAACCCCCTGCAACC-GCCACGTGCCCTGTCCGGCCACCTGGGCTGTGGGGAACTGGTCTCAGGTGAATG-C-GGGA-TGGGA-GGAG------------------------CCGCCTCCA---GTGCCACCCTTGGTCTCAGGCT-ACAGGGAG--GC-AGACA--GCCTTCCTCCAGCCCTTACTGCCTGGTACC----GTGGGAGGGA--GTCTGG--GGCATTCCAGGGTCCAGCC-TCTGACTCCAAAGCCTAAGGGATCAGGAA--GCCCCTGTGAAGCCAT-GGCCGA-AGCCATGACCTTGAGCTGGGTAGGGCCAGAGAGGGCTGGTTGGGGTCCC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             96321 451 +  11725426 CAGGTGGTGGGCAGGTGAGTGGCAGCTG-TGCTCCAGCTCCTGCGGGCCTAGGGGCGTCTCCCGCCGGGCCGTGCTCT-GCATCCGCAGCGTGGGGCTGGATGAGC-AGAGAGCCCTGGAGCCGC-CCGCCTGTGAACACCTTCCCCGGCCCCCAGCTGAAACCCCCTGCAACC-GCCACGTGCCCTGTCCAGCCACCTGGGCTGTGGGGAACTGGTCTCAGGTGAGTG-T-GGGA-TGGGA-GGGG------------------------CCGCCTCCA---GCGCCACCCTTGGTCTCAGGCT-ACAGGGAG--GC-AGACA--GCCTTCCTCCAGCCCTTACTGCCTGGTACCGTGGGTGGGAGGGA--GTCTGG--GGCATTCCAGGGTCCAGC---CTGACTCCAAAGCCTCAGGGATCAGGAA--GCCCCTGCAAAGCCGT-GGCCAC-AGCCATGACCTTGAGCTGGGTAGGGCCAGAGAGGGCTGGCTGGGGTCTC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            689417 453 +    730879 CAGGTGGTGGGCAGGTGAGTGGCAGCTG-TGCTCCAGCTCCTGCGGGCCTGGAGGCCTCTCCCGCCGGGCTGTGCTCT-GCATCCGCAGTGTGGGGCTGGATGAGC-AGAGCGCCCTGGAGCCGC-CCGCCTGTGACCACCTTCCCCGGCCCCTGGCTGAAACCCCCTGCAACC-ACCACGTACCCTGTCCGGCCACCTGGGCTGTGGGGAACTGGTCTCAGGTGAGTG-C-GGGA-TGGGA-GGGG------------------------CCGCCCTCA---GTGCCACCCTTGGTCTCAGGCT-ACAGGGAG--GC-AGACA--GCCTTCCTCCAGCCCTGACTGCCTGGTACCGTGGGTGGGAGGGA--GTCTGG--GGCATTCCAGGATCTAGCC-TCTGACTCCACAGCCTCAGGGATCAGGAA--GCCCCTGCGAAGCCGT-GGCCAC-AGCCATGACCTTGAGCTGGGTAGGGCCAGAGAGGGCTGGCTGGGGTCCC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5785605 428 -  36342412 CAGGTGGTGGGCAGGGGAGTGGCAGCCA-TGCTCCAGCTCCTGTGGGCCTAGGGGCCTCTCCCGCCGGACTGTGCTCT-GCATCCGCAGTGTGGGGCTGGATGAAC-AGAGCGCCCTGGAGCCAC-GGGCCTGTGAACACCTTCCCCAGCTCCCCACCGAAACCCCTTGCAACC-GCCATGTGCCTTGTCCGGCTACTTGGGCCGTGGGGAATTGGTCTCAGGTGAGTGCT-AGGG-TGGGA-GGATC----------------------TGGCCCCCCA---GCTCCAACC-TGGTCTTGGGCT-ACGGGCAG--GC-AGACA--GCCTTTATGCAGTCAT-------------TACT-------------GCCTAG------TTCCTAGACCCAGCC-CCTGATCCTGAAGCCTCCAGGATCAGGAA--GCTCTAGGCAAGTCAT-GGCCATAAGCCATGGTCTTGAGTTGGGCAGGGCCAGAGAGGGCTGGCTGAAGCCTC
i otoGar3.GL873530               I 1 C 0
s mm10.chr9                       90192377 427 + 124595110 CAGGTGGTGGGCAGGGGAGTGGCAGCCA-TGTTCCCGATCCTGCGGGCCCGAAGGCCTCTCTCGCCGGGCTGTGTTCT-GCATACGTAGTATGGGGCTGGATGAGC-AGCGTGCTCTTGAGCTAT-CTGCCTGCGAACATCTTCCCCGTCCCCTGGCTGAAACCCCGTGCAACC-GTCATGTAATCTGTCCTTCCACTTGGGGTGTGGGGAACTGGTCTCAGGTAAGTG-T-AGAAGTGAAA-GGGGA----------------------CCTGCCTCTG---GTACTACCATTG-----------CCTGGAAT--CC-TTACT--GCT----TGGTACCCG----------------AAGTGGGAGGGA--GCCTAGGGGGCATTCCTGGGACAA--C-ACTGTTCTCAGAGCCTTGGGGGTCAGGGA--TTCGTTGGCATGCTAT-GACTGTAAGCTATCATCCTGAGGCGAGCATAGCCATAGAGGGCTGTCTGAGACTTC
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58216314 424 +  91889043 CAGGTGGTGGACAGGGGAGTGGCAGCCG-TGCTCCCACTCCTGCGGGCCAGGGGGCCTGTCCCGCCGCGCGGTGCTCT-GCATCCGCAGCGTGGGGCTGGATGAGC-AGAGCGCCCTGGAGCCAC-CTGCCTGCGCACACCTGCCCCAGCCTCCTGCCGAAACCCCTTGCAACC-AAAATGTGTCCTGTCCGGCCACCTGGGCTGTGGGGAACTGGTCTCAGGTGAGCG-TCAGGA-TGGGA-CAGGG-----------------------CCACCCCCAGTGGCCCCCCCAGCAGCCTTGGGCT-TCGGGGAGCTGG-AGACA--GTCTTC---------------------------------AGGGA--GCCCGG---GCTGTCCCGG-TCCAGCC-TCTGTCCCCAGAGCCTCA-GGACCACGGT--GC-CCTGGCAAGCCAC-CACTACAAGCCATGGCCTTGAGGcggagggggccggagggggccggagggggccgg
i canFam3.chr3                   C 0 I 17
s dasNov3.JH579681                  850769 480 +   1727078 CAGGTGGTGGGCAGGTGAGTGGCAGCCG-TGCTCACGCTCCTGCGGGCCTGGGGGCGTCGCCCGCCGTTCGGTGCTCT-GCATCCGCAGCGTGGGGCAGGACGAGC-AGAGCGCCCTGGCCCCGC-CCGCCTGTGAGCGCCTTCCCCAGCCCCCCACCGAAAGCCCTTGCAACC-GCGATGTGCCCTGTCCTGCCACGTGGGCCGTGGGGAACTGGTCTCAGGTGAGCG-TTGGGA-TGGGG-TCGGGGTGAGGCGGGAGAGCGGGCGAGCCCTCCACCA---GCTCCCCCATCAGTCTGGGGCT-GCAGGGAG--GC-AGAAAATACCTTGGTGGCACCTTTATTGCCTGGCACTGTGGGAGGGAGGGAAGGTTGGG--GGAATTTGGGGGTCCAGCT-TCTGCCCCCAAAGTTTCAGGGACCAGGAT--GCCCCTGGCAAGTCAT-GGCACA-AGCCATGGGCCTGAG-TGAGCAGGGCCTGAGAGGGCTGGCTGAGGCCC-
i dasNov3.JH579681               C 0 C 0
e gorGor5.CYUI01015946v1            328300   0 -    378907 C

a score=474683.000000
s hg38.chr15_KI270850v1_alt          36764 75 +    430880 TGCCACTCTGACATCAGGCAGTGGACAG----GTTACCCAGCCTTGCCCCAGCGTCCCCTGGCAGCCT--GCCTCCCAGGC------
s panTro5.chr15                   59870215 75 +  83230942 TGCCACTCTGACATCGGGCAGTGGACAG----ATTACCCAGCCTTGCCCCAGCGTCCCCTGGCAGCCT--GCCTCCCAGGG------
i panTro5.chr15                  I 41934 T 42001
s panPan2.chr15                   23062873 75 -  99763055 TGCCACTCTGACATCGGGCAGTGGACAA----GTTACCCAGCCTTGCCCCAGCGTCCCCTGGCAGCCT--GCCTCCCAGGG------
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     10363 75 -     28805 TGCCACTCTGACATCGGGCAGTGGACAG----GTTACCCAGCCTTGCCCCAGCGTCCCCTGGCAGCCT--GCCTCCCAGCC------
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59997373 75 + 169600520 TGCCACTCTGACATAGGGTAGTGGACAG----GTTACCCAGCCATGCCCCAGCGTCCCCTGGCAGCCT--GCCTCCCAGCC------
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61595289 75 + 171882078 TGCCACCCTGACATAGGGCAGTTGACAG----GTTACCCAGCCATGCCCCAGCGTCCCCTGGCACCCT--GCCTCCCAGCC------
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3918856 41 +   4820037 TGCCACTCTGACATCGGGCAGTGGACAG----GTTACCCAGCCAT------------------------------------------
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9781392 41 +  10730278 TGCCACTCTGACATCAGGCAGTGGACAG----GTTACCCAGCCAT------------------------------------------
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1323348 75 +  24206276 TGCCACCCTGACATAGGGCAGTCGACAG----GTTACCCAGTCATGCCCCAGCGTCCCCTGGCACCCT--GCCTCCCAGCC------
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3922759 41 +   4030761 TGCCACTCTGACATCGGGCAGTGGACAG----GTTACCCAGCCAT------------------------------------------
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4028676 41 +   5013933 TGCCACTCTGACATCAGGCAGTGGACAG----GTTACCCAGTCAT------------------------------------------
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113749892 75 - 132174527 TGCCACTCTGACACCAGGCAGTGGACAG----GTTACCCTGCCTTGCCCCAGCATCCCCTGGCGGCCT--GCCTCCCAGCC------
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   88004 79 -    125141 TGCCACTCTGACACTGGGCAGTGGACAGTGCCTTGCCCCCGCCTTGCCCCAGCATCCCCTGGCAGCCC--GCCTCCCAGCC------
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             96772 79 +  11725426 TGCCACTCTGACACCGGGCAGTGGACAGTGCCTTGCCCCCACCTTGCCTCAGCGTCCCCTGGCAGCCT--GCCTCCCAGCC------
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            689870 75 +    730879 TGCTACTCTGACACCAGGCAGTAGACAG----GTTACCCCACCTTGCCCCAGTGTCCCCTGGCAGCCC--ACCTCCCAGCC------
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5786033 74 -  36342412 TGCTACTCTGCCACGGGGCAGTGGACAG----GTTACCCCATCTTGCCCTAGTGTCCCCTGGCAGCCC---CCTCCTGGCC------
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90192804 72 + 124595110 TGTCACTAAGACACCA-GCAGCGGGCAC----GTTCTGCCACCGTGCCCCAGCTTTCCCAGAAGCCC----CATCTTGGCC------
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58216755 36 +  91889043 TCCTCCTCTGACAGCGGGCAGTGG-CAG----GTGCCCTAC----------------------------------------------
i canFam3.chr3                   I 17 C 0
s dasNov3.JH579681                  851249 77 +   1727078 TGCCAC--TGACA----GCAGAGGGCAG----GGCACCCTGCCATGGCCCAGCTTGCCCTGGCAGCCCCCACCTGCTGACCCCTGCC
i dasNov3.JH579681               C 0 C 0
e gorGor5.CYUI01015946v1            328300  0 -    378907 C

a score=741060.000000
s hg38.chr15_KI270850v1_alt          36839 59 +    430880 TAAGCCCCTCACC-CTGGCTTCCC-CTGCAGTGCTCAGTGACATATGAGGAAGGGACTCAG
s panTro5.chr15                   59828289 59 +  83230942 TAAGTCCCTCACCTCTGGCTTCCC--TGCAGTGCTTAGTGACATGTGGGGAGGGCACTCAG
i panTro5.chr15                  T 42001 I 9
s panPan2.chr15                   23062948 60 -  99763055 TAAGCCCCTCACC-CTGGCTTTCCCCTGCAGTGCTCAGTGACATGTGGGGAGGGGACTCAG
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     10438 59 -     28805 TAAGCCCCTCACC-CTGGCTTCCC-CTGCAGTGCTCAGTGACATGTGGGGAGGGCACTCAA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59997448 59 + 169600520 TAAGCCCCTCACT-CTGGCTTCCC-CTGCAGTGCTCAGTGACATGTGGGGAGGGCACTCAG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61595364 59 + 171882078 TAAGCCCCTCACC-CTGGCTTCCC-CTGCAGTGCTCAGTGACATGTGGGGAGGGCACTCAG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3918897 56 +   4820037 ---GCCCCTCACC-CTGGCTTCCC-CTGCAGTGCTCAGTGACATGTGGGGAGGGCACTCAG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9781433 56 +  10730278 ---GCCCCTCACT-CTGGCTTCTC-CTGCAGTGCTCAGTGACATGTGGGGAGGGCACTCAG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1323423 59 +  24206276 TAAGCCCCTCACC-CTGGCTTCCC-CTGCAGTGCTCAGTGACATGTGGGGAGGGTACTCAG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3922800 56 +   4030761 ---GCCCCTCACC-CTGGCTTCCC-CTGCAGTGCTCAGTGACATGTGGGGAGGGCACTCAG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4028717 56 +   5013933 ---GCCCCTCACC-CTGGCTTCCC-CTGCAGTGCTCAGTGACGTGTGGGGAGGGCACTCAG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113749967 59 - 132174527 TGAGCCCCTCACC-CTGGCTTCCC-CCACAGTGCTCAGTGACATGCGGGGAGGGCACTCAG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   88083 59 -    125141 TGAGCCCCTCATC-GTGGCTTCCC-CCGCAGTGCTCAGTGACATGCGGGGAGGGCACTCAG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             96851 59 +  11725426 TGAGCCCCTCACC-CTGGCTTCCC-CCGCAGTGCTCAGTGACATGCGGGAAGGGCACTCAG
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            689945 59 +    730879 TGAGCCCCTCACC-CTGGCTTCCC-CCGCAGTGCTCAGTGACATGTGGGGAGGGCACTCAG
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5786107 59 -  36342412 TAAGCCCCTCACC-CTGGCCTCCT-TTGCAGTGCTCAGTGACATGCGGGGTGGGCACTCAG
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90192876 52 + 124595110 TGAGCT--------GTGACCTCCT-TTGCAGTGCTCTGTGACATGTGGAGCTGGCATTCGG
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58216791 59 +  91889043 CAGGCCCCTCACT-CTGGTCTCCT-CTGCAGTGCTCGGTGACGTGCGGGGAGGGCACACAA
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  851326 60 +   1727078 TGAGACCCTCAAC-CTGGCCTCCCTCTGCAGTGTTCGGCGACGTGCGGGGCAGGCACTCGG
i dasNov3.JH579681               C 0 C 0
e gorGor5.CYUI01015946v1            328300  0 -    378907 C

a score=79824.000000
s hg38.chr15_KI270850v1_alt          36898 7 +    430880 CACCGAA
s panPan2.chr15                   23063008 7 -  99763055 CGCCGAA
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     10497 7 -     28805 CACCGAA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59997507 7 + 169600520 CACTGAA
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61595423 7 + 171882078 AACCAAA
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3918953 7 +   4820037 CACCGAA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9781489 7 +  10730278 CACCGAA
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1323482 7 +  24206276 AACCAAA
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3922856 7 +   4030761 CACCGAA
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4028773 7 +   5013933 CACCGAA
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113750026 7 - 132174527 CACCGAA
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   88142 7 -    125141 CACCGAA
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             96910 7 +  11725426 CACCGAA
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            690004 7 +    730879 CACCGAA
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5786166 7 -  36342412 CACCGAA
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90192928 7 + 124595110 CAACGAA
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58216850 7 +  91889043 CACCGAA
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  851386 7 +   1727078 CACCGGG
i dasNov3.JH579681               C 0 C 0
e gorGor5.CYUI01015946v1            328300 0 -    378907 C
e panTro5.chr15                   59828348 9 +  83230942 I

a score=521983.000000
s hg38.chr15_KI270850v1_alt          36905 41 +    430880 ATGTCCTCTGCATCAGTGACACCGGTGTC-------CCCTGTGACGAG
s panTro5.chr15                   59828357 41 +  83230942 ATGTTCTCTGCACCAATGACCCTGGTGTC-------CCCTGTGACGAG
i panTro5.chr15                  I 9 I 42000
s panPan2.chr15                   23063015 41 -  99763055 ATGTCCTCTGCATCAGTGACACCGGTGTC-------CCCTGTGACGAG
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     10504 41 -     28805 ATGTCCTCTGCATCAATGACACTGGTGTC-------CCCTGTGACGAG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59997514 41 + 169600520 ATGTCCTCTGCACCAGTGATAATGGTGTC-------CCCTGTAACAAG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61595430 48 + 171882078 ATGTCCTCTGCACCAATGACACCGGTGTCCCGGTGTCCCTTTGTCGAG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3918960 41 +   4820037 ATGTCCTCTGCACCAATGACACTGGTGTC-------CCCTGTGACGAG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9781496 41 +  10730278 ATGTCCTCTGCACCAATGACACTGGTGTC-------CCCTGTGACGAG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1323489 47 +  24206276 ATGTCCTC-GCACCAATGACACTGGTGTCCTGGTGTCCCTTTGTCGAG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3922863 41 +   4030761 CTGTCCTCTGCACCAATGACACTGGTGTC-------CCCTGTGACGAG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4028780 41 +   5013933 ATGTCCTCTGCACCAATGACACTGGTGTC-------CCCTGTGACGAG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113750033 41 - 132174527 GTGTCCTCTGCACCAATGACACTGGTGTC-------CCCTGTGATGAG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   88149 41 -    125141 GTGTCCTCTGCACCAATGACACCGGTGTC-------CCCTGTGACGAG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             96917 41 +  11725426 GTGTCCTCTGCACCAATGACACCGGTGTC-------CCCTGTGACGAG
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            690011 41 +    730879 GTGTCCTCTGCACCAACGACACTGGTGTC-------CCCTGTGAAGAG
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5786173 41 -  36342412 GTGTCCTCTGTGCCAATGACACCGGCGTC-------CCCTGCGATGAG
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90192935 41 + 124595110 GTGTCCTCTGCATCAACAACACTGATGTC-------CCCTGTGATGAA
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58216857 41 +  91889043 GTGTCCTCTGCACCAATGACACCAGCGTC-------CCCTGCGATGAG
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  851393 41 +   1727078 TTGTCCTCTGCACCTATGATACTGGGGTC-------CCCTGCAACGAG
i dasNov3.JH579681               C 0 C 0
e gorGor5.CYUI01015946v1            328300  0 -    378907 C

a score=626770.000000
s hg38.chr15_KI270850v1_alt          36946 52 +    430880 GCCCAGCAGCCAGCCAGCGAAGTCACCTGCTCTCTGCCACCCTGTTGGTGGC
s panTro5.chr15                   59870398 52 +  83230942 GCCCAGCAGCCAGCCAGCGAAGTCACCTGCTCTCTGCCACTCTGTCGGTGGC
i panTro5.chr15                  I 42000 C 0
s panPan2.chr15                   23063056 52 -  99763055 GCCCAGCAGCCAGCCAGCGAAGTCACCTGCTCTCTGCCACTCTGTCGGTGGC
i panPan2.chr15                  C 0 C 0
s nomLeu3.chr6_GL398151_2_random     10545 52 -     28805 GCCCAGCAGCCAGCCAGCGAAGTCACCTGCTCTCTGCCACTCTGTCGGTGGT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59997555 52 + 169600520 GCCCAGCAGCCAGCCAGCGAAGTCATCTGCTCTCTGCCACCCTGTCGGTGGC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61595478 52 + 171882078 GCCCAGCAGCCAGCCAGCGAAGTCACCTGCTCTCTGCCACCCTTTAGGTGGC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3919001 52 +   4820037 GCCCAGCAGCCAGCCAGTGAAGTCACCTGCTCTCTGCCACCCTGTCGGTGGC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9781537 52 +  10730278 GCCCAGCAGCCAGCCAGCGAAGTCACCTGCTCTCTGCCACCCTGTCGGTGGC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1323536 52 +  24206276 GCCCAGCAGCCACCCAGCGAAGTCACCTGCTCTCTGCCACCCTTTCGGTGGC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3922904 52 +   4030761 GCCCAGCAGCCAGCCAGCGAAGTCACCTGCTCTCTGCCACCCTGTTGGTGGC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4028821 52 +   5013933 GCCCAGCAGCCAGCCAGCCAAGTCACCTGCTCTCTGCCACCCTGTCAGTGGC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113750074 52 - 132174527 GCCCAGCAGCCAGCACGCCAAGTCATCTGTTCTCTGCCACCCTGTCCACGGC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   88190 52 -    125141 GCCCAGCAGCCAGCCCACCAAGTCACCTGCTCTCTGCCACCCTGTCTGCGGC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             96958 52 +  11725426 GCCCAGCAGCCAGCCCGCCAAGTCACCTGCTCTCTGCCACCCTGTCCGCGGC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            690052 52 +    730879 GCCCAGCAGCCAGCACGCCAAGTCGCCTGCTCTCTGCCACCCTGTCTGCGGC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5786214 52 -  36342412 GCTCAGCAGCCAGCAAGCGAGGCCACCTGCCCTCTGCCACCCTGCCCTCAGC
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90192976 52 + 124595110 GCTGAGCGACCAATAACTGAGACCTTTTGTTTTCTGCAACCCTGCCAGTATC
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58216898 52 +  91889043 GCCCTGCGGCCGGCCAGTGGGGTTGCCTGTTCTCTGCCGCCCTGTCCATGGG
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  851434 52 +   1727078 GCCCAGCGGCCGGCGAGCGAGGCCGCCTGCCCTCTGCTGCCCTGCCCACGGA
i dasNov3.JH579681               C 0 C 0
e gorGor5.CYUI01015946v1            328300  0 -    378907 C

a score=16511.000000
s hg38.chr15_KI270850v1_alt          36998 1 +    430880 C
s panTro5.chr15                   59870450 1 +  83230942 C
i panTro5.chr15                  C 0 T 41993
s panPan2.chr15                   23063108 1 -  99763055 C
i panPan2.chr15                  C 0 I 1
s gorGor5.CYUI01015946v1            328300 1 -    378907 C
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     10597 1 -     28805 C
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59997607 1 + 169600520 C
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61595530 1 + 171882078 C
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3919053 1 +   4820037 C
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9781589 1 +  10730278 C
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1323588 1 +  24206276 C
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3922956 1 +   4030761 C
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4028873 1 +   5013933 C
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113750126 1 - 132174527 C
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   88242 1 -    125141 C
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             97010 1 +  11725426 C
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            690104 1 +    730879 T
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5786266 1 -  36342412 C
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90193028 1 + 124595110 C
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58216950 1 +  91889043 C
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  851486 1 +   1727078 C
i dasNov3.JH579681               C 0 C 0

a score=6965957.000000
s hg38.chr15_KI270850v1_alt          36999 537 +    430880 CCTGGACACACTGGGCCCTGAAGGCTCAGGCAGCGGCTCCT-CCAGCCACGAGCTCTTCAACGAGGCTGACTTCATCCCGCGCCACCTGGCCCCACGCCCTTCACCCGCCTCA-TCACCCAAGCCAGGCACCATGGGCAA-CGCCATTGAGGAGGAGGCTCCAA-AGCTGGACCTGCCGGGGCCCGTGTTTGTGGACGACTTCTA-CTACGACTACAATTTCATCAGCTTCCAC-GAGGATCTGTCCTTACGGGCCTTCTGAGGAGCCTGAT-CTAGACCTGGCGGGGACAGGGGATCGGACGCCCCCACCACACAGCCG-TCCTGCTGCGCCCTCCACGGGTAG-CCCTGTGCCTGCCACAGAGCCTCCTGCA---GCCAAGGAGGAAGGGGCAACGGGACCTTGGTCCCCGAGCCCTTG-------------GCCTAGCCAGGCCGGCCGCTCCCCACCCCCACCCTC-AGAGCAGAC-CCCTGGGAACCCTTT-GAT-CAAT-TTCCTGCCTGAGGAAGACACCCCCATAGGGGCCCCAGATCTTGGGCTCCCCAGCCTGCCCT
s panTro5.chr15                   59828458 549 +  83230942 CCTGGGCACACTGG-CCCTGAAGGCTCAGGCA-CGGCTCCTTCCAGCCACGAGCTCTTCA-TGAGGCTGAATTCATCCTGCGCCACCTG-CCCCACGCCCTTCACCTGTCTCAATCACCCAAGCCAGGCACCATGGGCAAAGGCCATTGAGGAGAAGGCTCCAAGAGCTGGAC-TGCCGGG-CCCGTGTTTGTGGACGACTTCTAGCTACGACTACAATTTCATCAATTCCAACTGAGGATCTGTCCATATGGGCC--CTG-GGAGCCCGATGCTAGACCCTGTGGGGAC-GGGGACCAGACACCCCCACCACACAGCCGATCCTGCTGCGCCCTCCACG--TAGGCCCCGTGCCTGCCACAGAGC-TCCTGAAAGCGCAATGGAGGAGGGGGCACCGGGACATTGG-CCCCTAGCCCTTGCCGCCTAGCCTTGGCCGAGCCAGGCTGGCTGCTGTCCCATCCCACCCTCCAGAGCAGACGCCTTGGGAACCCTTTTGATTCAATGTTCCTGC-TGAGGAA-AGGCCCCATGAGGGGCCCCAGATCTTGG-CTCTCCAGCCTGCC-T
i panTro5.chr15                  T 41993 C 0
s panPan2.chr15                   23063110 536 -  99763055 TTTGGGCACACTGGGCCCTGAAGGCTCAGGCAGCGGCTCCT-CCAGCCACGAGCTCTTCAATGAGGCTGACTTCATCCCGCGCCACCTGGCCCCACGCCCTTCACCCGCCTCA-TCACCCAAGCCAGGCACCATGGGCAA-CGCCATTGAGGAGGAGGCTCCAG-AGCTGGACCTGCCGGGGCCCGTGTTTGTGGACGACTTCTA-CTACGACTACAATTTCATCAACTTCCAC-GAGGATCTGTCC-TACGGGCCCTCTGAGGAGCCCAAT-CTAGACCTGGCGGGGACAGGGGACCGGACACCCCCACCACACAGCCA-TCCTGCTGCGCCCTCCACGGGTAG-CCCCGTGCCTGCCACAGAGCCTCCTGCA---GCCAAGGAGGAGGGGGTACTGGGACCTTGGTCCCCGAGCCCTTG-------------GCCCAGCCAGACCGGCCGCTCCCCACCCCCACCCTC-AGAGCAGAC-CCCTGGGAACCCTTT-GAT-CAAT-TTCCTGCCTGAGGAAGACACCCCCATAGGGGCCCCAGATCTTGGGCTCCCCAGCCTGTCCT
i panPan2.chr15                  I 1 C 0
s gorGor5.CYUI01015946v1            328301 535 -    378907 CCTGGACACACTGGGCCCTGAAGGCTCAGGCAGCGGCTCCT-CCAGCCACGAGCTCTTCAACGAGGCTGACTTCATCCCGCGCCACCTGGCCCCACGCCCTTCACCCGCCTCA-TCACCCAAGCCAGGCACCATGGGCAA-CGCCATTGAGGAGGAGGCTCCAG-AGCTGGACCTGCCGGGGCCCGTGTTTGTGGACGACTTCTA-CTACGACTACAATTTCATCAGCTTCCAC-GAGGATCTGTCC-TACAGGCCCTCTGAGGAGCCCAAT-CTAGAGCTGGCGGGGACAGGGGATCGGACGCCCCCACCACACAGCCG-TCCTGCTGCGCCCTCCACGGGTAG-CCCCGTGCCTGCCACAGAGCCTCCTGCA---GCCAAGGAGGAAGGGGCAACGGGACCTTGGTCCCCGAGCCCTTG-------------GCCTAGCCAGGCCGGCCGCTCCCCACCCCCACCCTC-AGAGCAGAC-CCCTGGGAACCCTTT-GAT-CAAT-TTCCTGCCTGAGGAAGACGCCCC-ATAGGGGCCCCAGATCTTGGGCTCCCCAGCCTGCCCT
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     10598 536 -     28805 CCTGGGCACACTGGGCCCTGAAGGCTCAGGCAGCGGCTCCT-CCAGCCACGAGCTCTTCAACGAGGCTGACTTCATCCCACGCCACCTGGCCCCACACCCTTCACCCGCCTCA-TCACCCAAGCCAGGCACCATGGGCAA-CGCCATTGAGGAGGAGACCCCAG-AGCTGGACCTGCCGGGGCCCGTGTTTGTGGATGACTTCTA-CTACGACTACAATTTCATCAACTTCCAC-GAGGATCTGTCC-TACGGGCCCTCTGAGGAGCCCAAT-CTAGACCTGGCGGGGACAGGGGATCGGACGCCCCCACCGCATAGCCG-TTCTGCTGTGCCCTCCACGGGTAG-CCCCGTGCCTGCCACAGAGCCTCCCGCA---GCCAAGGAGGAGGGGGCACCGGGACCTTGGTCCCCTAGCCCTTG-------------GCCCAGCCAGGCCAGCCGCTCCCCACCCCCACCCTC-AGAGCAGAC-CCCTGGGAACCCTTT-GAT-CAAT-TTCCTGCCTGAGGAAGATGCCCCCATAGGGGCCCCAGATCTTGGGCTCCCCAGCCTGCCCC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59997608 533 + 169600520 CCTGGACACACTGTGCCCTGAAGGCTCAGACAGCGGCTCCT-CCAGCCATGAGCTCTTCAATGAGGCTGACTTCATCCTGTGCCACCTGGCCCCATGCCCTTCACCTGCCTCA-TCACTCAAGCCAGCCACCATGGGCAA-CGCCATTGAGGAGGAGGCCCTAG-AGCTGGACACGCCGAGGCCCGTGTTTGTGGACAACTTCTA-CTATGACTACAATTTCATCAACTTCCAC-AAGGATCTGTCC-TATGGGCCCTTTGAGGAGCCATAT-CTAGACCTGGAGTGGACAGGGGATCGGACTCCCCGACCACACAGCCG-TCCTACTGTGCCTTCCATGTGTAG-CCCCGTGCCTGCCACAGAGCCTCCTGCA---GCCAAGG-GGAGGGGGCACCGGGATCTTGGTCCCCTAGCCCTTG-------------ACCCAGCCAGGCTGGCTGCTCCCCACCCCCACCCTC-AGAGCAGAC-CCCTGGGAACCCTTT-GAT-CAAT-TTCCT-CCTGAAGAAGATGCCCCCAGGGGTGCCCCAGATCTTGGG-TTCCCAGCCTGCCCT
i rheMac8.chr7                   C 0 I 1
s macFas5.chr7                    61595531 536 + 171882078 CCCGGACACACTGGGCCCTGAAGGCTCAGGCAGTGGCTCCT-CCAGCCATGAGCTCTTCAATGAGGCTAACTTCATCCTGCACCACCTGGCCCCAGGCCCTTCACCTACCTCA-TCACTCAAGCCAACCACCATGGGCAA-CGCCATTGAGGAGGAGGCCCTAG-AGCTGGACCTGCCAGGGCCCATGTTTGTGGACGACTTCTA-CTATGACTACAATTTCATCAACTTCCAC-AAGGATCTGTCC-TATGGGCCCTTTGAGGAGCCCGAT-CTAGACCTGGAGTGGACAGGGGATCGGACTCCCTGACCACACAGCCA-TCCTGCTGTGCCTTCCATGTGTAG-CCCCGTGCTTACCACAGAGCCTCCTGCA---GCCAAGGAGGAGGGGGCACCGGGATCTTGGTCCCCTAGCCCTTG-------------GCCCAGCCAGGCCAGCTGCTCCCCACCACCACCCTC-AGAGCAGAC-CCCTGGGAACCCTTT-GAT-CAAT-TTCCTGCCTGAGGAAGAAGGTCCCATAGGGGCCCCAGACCTTGGGCTCCCCAGCCTGCCCT
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3919054 536 +   4820037 CCTGGACACACTGGGCCCTGAAGGCTCAGGTAGCGGCTCCT-CCAGCCACGAGCTCTTCAATGAGGCTGACTTCATCCCACGCCACCTGGCCCCACGCCCTTCACCGGTCTCA-TCACCCAAGCCAGCCACCATGGGCAA-CGCCATTGAGGAGGAGGCCCTAG-AGCTGGACCTGCCGGGGCCCGTGTTTGTGGATGACTTCTA-CTACGACTACAATTTCATCAACTTCCAT-GAGGATCTGTCC-TATGGGCCCTCTGAGGGGCCTGAT-CTAGACCTGGCGGAGACAGGGGATCAGACGCCCCCACCACACAGTGG-TCCTGCTGTGCCCTCCACAGGTAG-CCCTGTGCCTGCCACAGAGCCTCCTGCA---GCCAAGGAGGAGGGGGCACCGGGACCTTGGTCCCCCAGCCCTTG-------------GCCCAGCCAGGCCGGCCACTCCCCACCCCCACCCTC-AGAGCAGAC-CCCTGGGAACCCTTT-GAT-CAAT-TTCCTGCCTGAGGAAGACGCCCCCAGAGGGGCCCCAGATCTTGGGCTCCCCAGCCTGCCCT
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9781590 536 +  10730278 CCTGGACACACTGGGCCCTGAAGGCTCAGGTAGCGGCTCCT-CCAGCCACGAGCTCTTGAATGAGGCTGACTTCATCCCACGCCACCTGGCCCCACGCCCTTCACCGGTCTCA-TCACCCAAGCCAGCCACCATGGGCAA-CGCCATTGAGGAGGAGGCCCTAG-AGCTGGACCTGCCGGGGCCCGTGTTTGTGGATGACTTCTA-CTACGACTACAATTTCATCAACTTCCAT-GAGGATCTGTCC-TATGGGCCCTCTGAGGGGCCTGAT-CTAGACCTGGCGGAGACAGGGGATCAGACGCCCCCACCACACAGTGG-TCCTGCTGTGCCCTCCACAGGTAG-CCCCGTGCCTGCCACAGAGCCTCCTGCA---GCCAAGGAGGAGGGGGCACTGAGACCTTGGTCCCCTAGCCCTTG-------------GCCCAGCCAGGCTGGCCACTCCCCACCCCCACCCTC-AGAGCAGAC-CCCTGGGAACCCTTT-GAT-CAAT-TTCCTGCCTGAGGAAGACGCCCCCAGAGGGGCCCCAGATCTTGGGCTCCCCAGCCTGCCCT
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1323589 520 +  24206276 CCCGGACACACTGGGCCCTGAAGCCTCAGGCAGCGGCTCCT-CCAGCCATGAGCTCTTCAATGAGGCTAACTTCATCCTGCGCCACCTGGCCCCAGGCCCTTCACCTGCCTCA-TCACTCAAGCCAACCACCATGGGCAA-CGCCATTGAGGAGGAGGCCCTAG-AGCTGGACCTGCCAGGGCCCGTGTTTGTGGACGACTTCTA-CTATGACTACAATTTAATCAACTTCCAC-AAGGATCTGTCC-TATGGGCCCTTTGAGGAGCCCGAT-CTAGACCTGGAGTGGACAGGGGATCGGACTCCCTGACCACACAGCCA-TCCTGCTGTGCCTTCCATGTGTAG-CCCCGTGCTTACCACAGAGCCTCCTGCA---GCCAAGGAGGAGGGGGCACCGGGATCTTGGTCCCCTAGCCCTTG-------------GCCCAG----------------CCACCACCACCCTC-AGAGCAGAC-CCCTGGGAACCCTTT-GAT-CAAT-TTCCTGCCTGAGGAAGAAGGTCCCATAGGGGCCCCAGACCTTGGGCTCCCCAGCCTGCCCT
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3922957 536 +   4030761 CCTGGACACACTGGGCCCTGAAGGCTCAGGTAGCGGCTCCT-CCAGCCACGAGCTCTTCAATGAGGCTGACTTCATCCCACGCCACCTGGCCCCACGCCCTTCACCGGTCTCA-TCACCCAAGCCAGCCACCATGGGCAA-TGCCATTGAGGAGGAGGCCCTAG-AGCTGGACCTGCCGGGGCCCGTGTTTGTGGATGACTTCTA-CTACGACTACAATTTCATCAACTTCCAT-GAGGATCTGTCC-TATGGGCCCTCTGAGGGGCCTGAT-CTAGACCTGGCGGAGACAGGGGATCAGACGCCCCCACCACACAGTAG-TCCTGCTGTGCCCTCCACAGGTAG-CCCTGTGCCTGCCACAGAGCCTCCTGCA---GCCAAGGAGGAGGGGGCACCGGGACCTTGGTCCCCTAGCCCTTG-------------GCCCAGCCAGGCCGGCCACTCCCCACCCCCACCCTC-AGAGCAGAC-CCCTGGGAACCCTTT-GAT-CAAT-TTCCTGCCTGAGGAAGATGCTCCCAGAGGGGCCCCAGATCTTGGGCTCCCCAGCCTGCCCT
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4028874 536 +   5013933 CCTGGACACACTGGGCCCTGAAGGCTCAGGTAGCGGCTCTT-CCAGCCACGAGCTCTTCAATGAGGCCGACTTCATCCCACGCCACCTGGCCCCACGCCCTTCACCCGTCTCA-TCACCCAAGCCAGCCACCATGGGCAA-CGCCATTGAGGAGGAGGCCCTAG-AGCTGGACCTGCTGGGGCCCGTGTTTGTGGATGACTTCTA-CTATGACTACAATTTCATCAACTTCCAT-GAGGATCTGTCC-TATGGGCCCTCTGAGGGGCCTGAT-CTAGACCTGGTGGAGACAGGGGATCAGACGCCCCCACCACACAGTGG-TCCTGCTGTGCCCTCCACAGGTAG-CCCTGTGCCTGCCACAGAGCCTCCTGCA---GCCAAGGAGGAGGGGGCACCGGCACCTTGGTCCCCTAGCCCTTG-------------GCCCAGCCAGGCCGGCAGCTCCCCACTCCCACCTTC-AGAGCAGAC-TCCTGGGAACTCTTT-GAT-CAAT-TTCCTGCCTGAGGAAGACGCCCCCATAGGGGCCCCAGACCTTGGGCTCCCCAGCCTGCCCT
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113750127 536 - 132174527 CCTGGACACACTGGTCCCTGAAGGCTCAGGCAGCGGCTCTT-CCAGCCACGAGCTCTTCAATGAGGCTGACTTCATCCCGCGCCGCCTGGCCCCGCGCCCTTTACCCACCTCG-GCACCCAGGCCAGCCAGCATGGGCAA-CGCCATCAACGAGGAAGCCCTGG-AGCCGGACCTGCTGGGGCCCGTGTTTGTGGATGACTTCTA-CTATGACTACAATTTCATCAACTTCCAC-GAGGACCTGTCT-TACGGGCCCTTTGAGGAGCCCGAT-CTAGACCTGGTGGGGACAGGGGATGGGACACCCACACCACGTGGCCA-TCCTGCTGCACCCTCAACGGGTAG-CCCCGTGCCTGTCACAGAGCCTTATGCA---GCCACGGAGGAGGGGGCGCTGGGACCTTGGTCCCTTAGCCCTTG-------------GCCCAGCCAGGCCGGCCACTCCCCACCCCCACCCTC-AGAGCTGAC-CCCTGGGAACTCTTT-GGT-CAAT-TTCCTGCCTGAGGAAGATGCCCCAATAGGGGCCCCAGACCTTGGGCTCCCCAGCCTGCCCT
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   88243 536 -    125141 CCTGGACACACTGGTCCCTGAAGGCTCAGGGAGCGGCTCCT-CCAGCCACGAACTCTTCAACGAGGCTGACTTCATCCCGCGCCACCTGGCCCCACGCCCTTCACCCACCTCA-GCACCCAGGCCAGCCAGCATGGGCAA-CGCCATCGACGAGGAGGCCCTGG-AGCTGGACCCACCAGGGCCCGTGTTTGTTGACGACTTCTA-CTACGACTACAATTTCATCAATTTCCAC-GAGGACCTGTCC-TACGGGCCCTTTGAGGAGCCCGAT-CTAGACCTGGCAGGGACAGGGGATGGGACACCCACACCACGTGGCCG-TCCTGCTGCGTCCTCCACAGGTAG-CCCCGTGTCTGCCACAGAGCCTCCTGCA---GCCACGGAGGAGGGGGCCCTGGGATCTTGGTCCCCTAGCCCTTG-------------GCCCAGCCAGGCCGGCCTCTCCCCACCCCCACCCTC-AGAGCCGAC-CCCTGGGAACTCTTT-GCT-CAAT-TTCCTGCCTGAGGAAGACACCCCCATAGGGGCTCCAGATCTTGGGCTCCCCAGCCTACCCA
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             97011 534 +  11725426 CCTGGACACAATGATCCCTGAAGGCTCAGGCAGCGGCTCCT-CCAGCCACGAGCTCTTCAACGAGGCTGACTTCATCCCGCGCCACCTGGTCCCACGCCCTTCACCCACCTCA-GCACCCAGGCCAGCCAGCATGGGCAA-TGCCATCGACGAGGAGGCCCTGG-AGCTGGACCCGCCGGGGCCCGTGTTTGTGGATGACTTCTA-CTACGACTACAATTTCATCAACTTCCAC-GAGGACCTGTCC-TACGGGCCCTTTGAGGAGCCCGAT-CTAGACCTGGCAGGGACAGGGGATGGGACACCCACACCACGCGGCCG-TCCTGCTGCGCCCTCCACAGGTAG-CCCCGCACCTGCCACAGAGCCTCCTGCA---GCCACGGAGGAGGGGGCACCGGGACCTTGGTCCCCTAGCCCTTG-------------GCCCAGCCAGGCCGGCCGCTCCCCACCGCCACCCTC-AGAGCTGAC-CCCTGGGAACTC--T-GGT-CAAT-TTCCTGCCTGAGGAAGACACCCCCATGGGGGCCCCAGACCTTGGGCTCCCCAGCCTGCCCT
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            690105 536 +    730879 CCTGGACACACTGGCCCCTGAAGGCTCAGGCAGCGGCTCCT-CCAGCCACGAGCTCTTCAACGAGGCTGACTTCATCCCGCGCCACCTGGCCCCACGCCCTTCACCCACCTCA-GCACCCAGGCCGGCCAGCATGGGCAA-CGCCATCGACGAGGAGGCCCCGG-ACCTGGACCCGCCGGGGCCCGTGTTTGTGGACGACTTCTA-CTACGACTACAATTTCATCACCTTCCAT-GAGGACCTGTCC-TACGGGTCCTTTGAGGAGCCCGAT-CTAGACCTGGTGGGGACAGGGGATGGGACGCCCGCACCGCGCGGCCG-TCCTGCTGCGCCCTCCACGGGTAG-CCCCGTGCCTGCCACAGAGCCTCCTGCA---GCCACGGAGGAGGGGGCACCGGGAACTTGGTCCCCTAGCCCTTG-------------GCCCAGCCTGGCTGGCCGCTCCCCACCCCCACCCTC-GGAGCCGAC-CCCTGGGAACTCTTT-GGT-CAAT-TTCCTGCCTGAGGAAGATGCCCCTATAGGGGCCCCAGACCTTGGGCTCCCCAGCCTGCCCT
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5786267 518 -  36342412 TTCGGACATGGTGGGCCCTGAAGGCTCGGGGAGCGGCTCCT-CCAGTCATGAGCTTTTCAATGAGGTCGACTTCATCCCACACCACCTGGCCCCACGCCCTGTGCCTCCTTCA-TCCCCTGCGCCAGCCAGCATGGGCAA-TGCCATCGAGGAGGAGG-------ACCTGGACCTGCCAGGACCTGTGTTTGTTGATGACTTCTA-CTATGACTACAATTTCATTAACTTCCAT-GAGGATCTGTCC-TATGATCCCTTTGAGGAGCCCCAT-TTGGTCCCAGTGGGAACAGATAATTGGACGCCTCC-------------ACCTGCAGAGCCCCCCATGGCCAC-CCCCATGCCTGCCACAGAGCCTCCTGTG---ACTGGGGAGGAAAGAGTGCTTAGATCTCAGTCCCCTGGCCCTTG-------------GCCCAAGCAGGCCAGCCCCACCCTGCCCCCACCTTT-GGAGCAGAC-CCCTGATTCCCCCTT-CGT-CAAT-TTCTTGCCTGAGGAAGATACCCCTGTGGGGGCTCCAGACCTTGGACTCCCCAGCTTGCCCT
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90193029 527 + 124595110 CATGTACATAGTGGACACAGGTGCCTCTGGAAGCGGCTCCT-CCAGCCCCGAGCTCTTCAATGAGGTTGACTTCATCCCGAACCAGCTGGCCCCACGACCTTCCCCAGCATCC-TCACCCAAGCCGGTCAGCATCAGCAA-CGCTATTGATGAGGAGG-------AACTAGATCCGCCAGGGCCCGTGTTTGTGGATGATTTCTA-TTATGACTACAATTTCATTAACTTCCAT-GAAGACCTGTCC-TATGGGTCCTTTGAAGAACCCCAT-CCAGACCTGGTTGATAATGGGGGTTGGACAGCACCACCTCACATCAG-ACCCACTGAATCTCCCTCAGATAC-CCCAGTACCTACTGCAGGGGCTCTTGGA---GCTGAGGCAGAAGACATTCAGGGATCTTGGTCTCCTAGCCCCTT-------------ACTCAGTGAGGCTAGCTATTCCCCACCAGGA---TT-AGAGCAGAC-CTCCATCAACCCCCT-GGC-CAAT-TTCTTGACTGAGGAAGATACTCCCATGGGGGCCCCTGAACTTGGATTCCCCAGCTTGCCCT
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58216951 458 +  91889043 ---------CCTGGACCCCGAAGGCTCGGGCAGTGGCTCCT-CCAGCCGCGAGCTCTTCAATGAGATCGACTTCATCCCCCCCCGCCTGGCCCCACGCCCTCTGCTCGCCTCG-TCCCCCGAGCCGGCCAGCATGAGCAA-CGCCATCGAGGAAGA---CCCCG-AGTCGGGCCCGTCGGGGCCTGTGTTTGTTGACGATTTCTA-CTATGACTACAATTTCATTAACTTCCAC-GAGGACCTGTCC-TACGGACCCTTTGAGGATCCCGAC-CCAAACCTGGCAGGTGCAGGGGATCGGACACCCCCACCCCTGAGCCG-ACCTGCGGAGGCTCCCACAGGCAC----------------------------------------------------------------------CCCTCG-------------GCCCAGCCAGGCTGGCCTGTCTCCGCACCCGCCCTT-GGGTCAGGC-CCCTGGGAGCCCCCC-GGG-CAAT-TTCTTACCTGAGGAAGATGCCCCCGTGGTGACCCCAGACTCGGGGCTCCCCAGCTTGCCCC
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  851487 536 +   1727078 TCAGGACCTGCTGGGCCCAGAAGGCTCTGGCAGTGGCTCCT-CCAGCCATGAGCTCTTCAACGAGGTCGACTTCACCCCAAGGCTTGCGGCCCCACGCCCTCCGACCCCCTCC-TCACCCAGGCCGGTGAGCCTGGGCAA-TGCCATCACAGAGGAGGACCTGG-AGCTGGGCCAGCCGGGGCCTGTGTTTGTGGATGACTTCTA-CTATGACTACAATTTCATTGACTTCCAC-GAGGACCTGTCC-TATAAGCCCTTTGAGGAGCCAGAT-CCAGGCCAGGCGGGCATGGGGAATTGGACACCCCCATCTCCGAGCAG-TCCTGCCGAGACCCCCACGGGCAC-CCCCAGGCCTGCCACAGGGCCTCCTGGG---GACAAGGAGGAGGGGGTCCTGGGAGATTGGTCCCCTGCCCCTGG-------------GCCCAGCCAGGCTGCCACCTCCCCAGCCCCACCCTT-GGAGCAGGC-CCCCGGGAACCTCTT-GCT-CAAC-TTCTTGTCTGAGGAAGACATGTCCGTTGAGGCCCCAGGTCTCCAGCTTCCCAGTTTACCCT
i dasNov3.JH579681               C 0 C 0

a score=5579220.000000
s hg38.chr15_KI270850v1_alt          37536 535 +    430880 GGCCCAGGGTTTCCACTGATGGCCTGC-AGAC-------GCCTGCCGCCCCTGAGAGCCAAAATGATTTCCCAGTTGGCAAGGACA-GCCAGAGCCAGCTGCCCTCTC-CATGGCAGGACAGGACCAACGAGGTTTTCAA--ATGATGAGGGACCCAAGGGCTGCGGAGCACCC--CACCTGCCCCCGAGACCCAGCCCCACGCTGCCCACTTTGTACCCG---------------GTCAGCAGCACCCACTCC-TCTCCTAGTCCTGACGTGG--CGGAGCTGTGGACAGGAGGGACAGTAGCCTGGGAG--TC-----------------------------------------------------AGCTCTGGAGGGTGGCCTGGGGCCTGTGGACAGTGAACTGTGGCCCACTGTTAGGGTG-GC-TTCTCTCCCTC---CTC-CTC----CCATAGCCCCTTTG--CCAGAGATGAAGGGCAAGGACAGTCCCCTGCAGCC-GGGGACTTCCACCTT-CCCAACCCCAGGACCAGGCTCATGGGACCTGC--AGACTGTGGCAGTGTGGGGGACCTTCCTCCCCAC-AACCCTGAC-TGGC--CTCGGGCACAC------GCCT---GAGCCTGCCCTGAACCCAG
s panTro5.chr15                   59829007 549 +  83230942 GGCCCAGGGTTTCCACTGATGGCCTGCAAGACACTTTTTGCCTGCC-CGCCGGATAGCCAAAATGATTTCCCAGTTGG-AAGGACATGCCAGAGCCAGCTGCCCCCTCGCATGGCGGGGCAGGACC-ATGAGGTTTTCAA--AGGATGCATGAACCGAGGGCCGTGGAGCCACCGTCACCTATCCCCGAG--CCAGCCGCACACTGCC--CTTTGT--CCG---------------ATCGGCAGCACCCACTCCTTCTCCTAGTCCTGACGCGGCCCGGAGGTGTGGACAGGAGGGACAGGGCCACGGGAAGCGC-----------------------------------------------------AGCTCTGGAGGGTGGCCTGGGCC---------GTGAACTGTGG-CCACTGTGGGGTTG-GCTTTCTCCCCCTCTCGCTCTCTC----CCATAAGCCCTCTGGTCCAGAGATGAAGGGGAGGGACAGCTCCCTGGAGCCAGGGAACTCCCACCTTGCCCGAACCCAGGACCAGGCTCATGGATCCTGCCAAGACTGTGGCCGTGTGGGGGACCTTCCTCCCCACGAACCCTGACATGGCGGCTCGGGCACAT-----GGCCT---GAGGCTGCCCTGAACCCAG
i panTro5.chr15                  C 0 I 46
s panPan2.chr15                   23063646 537 -  99763055 GGCCCAGGGTTTCCACTGATGGCCTGC-AGAC-------ACCTGCCACCCCTGAGAGCCAAAATGATTTCCCAGTTGGCAAGGACA-GCCAGAGCCAGCTGCCCCCTC-CATGGCGGGACAGGACCAATGAGGTTTCCAAGGATGATGAGGAACCCAAGGGCCGCGGAGCACCC--CACCTGCCCCCGAGACCCAGCTCCACGCTGCCCCCTTTGTCCCCT---------------GTTGGCAGCACCCACTCC-TCTCCTAGTCCCAACGTGG--Cggagctgtggacaggaggcacagtggcctgggag--cc-----------------------------------------------------agctctggagggtggcctggggcctgtggacagtgaactgtggCCCACTGTTGGGGTG-GC-TTCTCTCCTTC---CTC-CTC----CCATAGCCCCTCTG--CCAGAGATGAAGGTCAGGGACAGTTCCCTGGAGCC-GGGGACTCCCACCTT-CCCAACCCCAGGACCAGGCTCATGGGACCTGC--AGACTGTGGCAGTGTGGGGGACCTTCCTCCCCAC-AACCCTGAC-TGGC--TTCGGGCACAT------GCCT---GAGCCTGCCCTGAACCCAG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            328836 534 -    378907 GGCCCAGGGTTTCCACTGATGGCCTGC-AGAC-------GCCTGCCGCCCCTGAGAGCCAAAATGATTTCCCAGTTGGCAAGGACA-GCCAGAG-CAGCTGCCCTCTC-CATGGCAGGACAGGACCAATGAGGTTTTCAA-AATGATGAGGAACCCGAGGGCTGCGGAGCACCC--CACCTG-CCCCGAGACCCAGCCCCACGCTGCCCACTTTGTACCCG---------------GTCAGCAGCACCCACTCC-TCTCCTAGTCCTGACGTGG--CGGAGCTGTGGACAGGAGGGACAGTAGCCTGGGAG--TC-----------------------------------------------------AGCTCTGGAGGGTGGCCTGGGGCCTGTGGATAGTGAACTGTGGCCCACTGTTGGGGTG-GC-TTCTCTCCCTC---CTC-CTC----CCATAGCCCCTCTG--CCAGAGATGAAGGGCAAGGACAGTCCCCTGGAGCC-GGGGACTCCCACCTT-CCCAACCCCAGGACCAGGCTTATGGGACCTTC--AGACTGTGGCAGCATGGGGGACCTTCCTCCCCAC-AACCCTGAC-TGGC--CTCGGGCACAC------GCCT---GAGCCTGCCCTGAACCCAG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     11134 537 -     28805 GGCCCAGGGTTTCCACTGATGGCCTGC-AGAC-------GCCTGCCGCCCCTGAGAGCCAAAATGACTTCCCAGTTGGCAAGGACA-GCCAGAGCCAGCTGCCCCCTC-CATGGCGGGACAGGACCAAAGAGGTTTTCAAGGATGATGAGGAACCTGAGGGCCGCGGAGCACCC--CACCTGCCCCCAAGACCCAACTCCACGCTGCCCACTTTGTCCCCG---------------GTCGGCAGCAGCCACTCC-TCTCCTAGTCCTGACGTGG--CGGAGCTGTGGACAGGAGGGAGAGTCGCCCGGAAG--CC-----------------------------------------------------AGctctggagggtggcctagggcctgtggacagtgaactgtggCCCACTGTTGGGGTG-GC-TTCTCCCCCTC---CTC-CTC----CCATAGCCCCTCTT--CCAGAGATGAAGGGCAGGGACGGTCCCCTGGAGCT-GGGGACTCCCACCTT-CCCAACCCTAGGACCAGGCTCATGGGACCTGC--AGACTGTGGCAGTGTGGGGGACCTTCCTCCCCAC-AATGCCGAC-TGGC--CTCGGGCACAC------GCCT---GAGCCTGCCCTGAACCCAG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61596067 537 + 171882078 GGCCCAGGGTTTCCATTGATGGCCTGC-AGAT-------GCCTGCCGCCCCTGAGAGCCAAAATGACTTCCCAGTTAGCAAGGACA-GCCCGAGCCAGCTGCCTCCTC-CATGGAGGGACAGGACCAACGAGGTTTTCAAGGATGATGAGGAACCTGAGGGCCGCAGAGCACCC--CACCTGCCTCCAAGACCCAGCCCCACACTGCCCCCTTTGTTCCTG---------------GTCGGCAGCACCCACTCT-TCTCCTAGTCCTGACGTGA--CAGAGCTGTGGACAGGAGGGACTGTGGCCTGGGAG--CC-----------------------------------------------------AGCTCTGGAGGGTGGCCTGGGGCCTGTGGAGAGTGAACTGTGGCCCACTGTTGGGGTG-GC-TCCTCCCCCTC---CCT-CCC----CCATAGCCCCTCTG--CCAGAGATGAAGGGCAGGGATGGCCCCCTGGAGCC-GAGGACTCCCACCTT-CCCAACCCCAGGACCAGGATCATGGGACCTGC--AGACTGTGGCAGTGTGGGGGACCTTCCTTCCCAC-AACCCTGAC-TGGC--CTCAGGCACAC------GCCT---GAGCCTGCCCTGAACCCAG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3919590 552 +   4820037 GGCCCAGGGTTTCCATTGATGGCCTGC-AGAC-------GCCTGCCGCCCCTGAGAGCCAAAATGACTTCCCAGTTGGCAAGGACA-GCCAGAGCCAGCTGCCCCCTC-CATGGAGGGACAGGACCAATGAGGTTTTCAAGGATGATGAGGAACCCGAAGGCCGCGGAGCACCC--CACCCGCCTCTGAGACCCAGCCCCACGCTGCCCCCTTTGTCCCTGCCCCCTTTGTCCCCTGTCGGCAGTACCCACTCC-TCTCCTAGTCCTGATGTGA--CAGAGCTATGGACAGGAGGGACTGTGGCCTGGGAG--CC-----------------------------------------------------AACTCTGGAGGGTGGCCTGGGGCCTGTGGACAGTGAACTGTGGCCCACTGTTGGGGTG-GC-TCCTCCCCCTC---CTC-CCC----CCATAGCCCATCTG--CCAGAGATGAAGGGCAGGGACAGCCCCCTGGAGCC-AAGGACTCCCACCTT-CCCAACCCCAGGACCAGGCTTATGGGACGTGC--AGACTGTGGCAGTGTGGGGGACCTTCCTCCCCAC-AACCCTGAC-TGGC--CTCGGGCACAC------GCCT---GAGCCTGCCCTGAACCCAG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9782126 552 +  10730278 GGCCCGGGGTTTCCATTGATGGCCTGC-AGAC-------GCCTGCCGCCCCTGAGAGCCAAAATGACTTCCCAGTTGGCAAGGACA-GCCAGAGCCAGCTGCCCCCTC-CATGGAGGGACAGGACCAATGAGGTTTTCAAGGATGATGAGGAACCCGAGGGCCGCGGAGCACCC--CACCCGCCTCTGAGACCCAGCCCCACGCTGCCCCCTTTGTCCCTGCCCCCTTTGTCCCCTGTCGGCAGTACCCACTCC-TCTCCTAGTCCTGATGTGA--CAGAGCTATGGACAGGAGGGACTGTGGCCTGGGAG--CC-----------------------------------------------------AACTCTGGAGGGTGGCCTGGGGCCTGTGGACAGTGAACTGTGGCCCACTGTTGGGGTG-GC-TCCTCCCCCTC---CTC-CCC----CCATAGCCCATCTG--CCAGAGATGAAGGGCAGGGACAGCCCCCTGGAGCC-GAGGACTCCCACCTT-CCCAACCCCAGGACCAGGCTTATGGGACGTGC--AGACTGTGGCAGTGTGGGGGACCTTCCTCCCCAC-AACCCTGAC-TGGC--CTCGGGCACAC------GCCT---GAGCCTGCCCTGAACCCAG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1324109 594 +  24206276 GGCCCAGGGTTTCCATTGATGGCCTGC-AGAT-------GCCTGCCGCCCCTGAGAGCCAAAATGACTTCCCAGTTAGCAAGGACA-GCCCGAGCCAGCTGCCTCCTC-CATGGAGGGACAGGACCAACGAGGTTTTCAAGGATGATGAGGAACCTGAGGGCCGCAGAGCACCC--CACCTGCCTCCAAGACCCAGCCCCACACTGCCCCCTTTGTTCCTG---------------GTCGGCAGCACCCACTCT-TCTCCTAGTCCTGACGTGA--CAGAGCTGTGGATAGGAGGGACTGTGGCCTGGGAG--CCAGCTCTGGAGGgtggcctggggcctgtggagagtgaactgtggcccgggacccagctctggagggtggcctggggcctgtggacagtgaactgtggccCACTGTTGGGGTG-AC-TCCTCCCCCTC---CCT-CCCCCCGCCATAGCCCCTCTG--CCAGAGATGAAGGGCAGGGACAGCCCCCTGGAGCC-GAGGACTCCCACCTT-CCCAACCCCAGGACCAGGATCATGGGACCTGC--AGACTGTGGCAGTGTGGGGGACCTTCCTTCCCAC-AACCCTGAC-TGGC--CTCGGGCACAC------GCCT---GAGCCTGCCCTGAACCCAG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3923493 552 +   4030761 GGCCCAGGGTTTCCATTGATGGCCTGC-AGAC-------ACCTGCCGCCCCTGAGAGCCAAAATGACTTCCCAGTTGGCAAGGACA-GCCAGAGCCAGCTGCCCCCTC-CATGGAGGGACAGGACCAATGAGGTTTTCAAGGATGATGAGGAACCCGAGGGCCGCGGAGCACCC--CACCCGCCTCTGAGACCCAGCCCCACGCTGCCCCCTTTGTCCCTGCCCCCTTTGTCCCCTGTCGGCAGTGCCCACTCC-TCTCCTAGTCCTGATGTGA--CAGAGCTATGGACAGGAGGGACTGTGGCCTGGGAG--CC-----------------------------------------------------AACTCTGGAGGGTGGCCTGGGGCCTGTGGACAGTGAACTGTGGCCCACTGTTGGGGTG-Gc-tcctccccctc---ctc-ctc----cCATAGCCCATCTG--CCAGAGATGAAGGGCAGAGACAGCCCCCTGGAGCC-GAGGACTCCCACCTT-CCCAACCCCAGGACCAGGCTTATGGGACGTGC--AGACTGTGGCAGTGTGGGGGACCTTCCTCCCCAC-AACCCTGAC-TGGC--CTCGGGCACAC------GCCT---GAGCCTGCCCTGAACCCAG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4029410 537 +   5013933 GGCCCAGGGTTTCCATTGATGGCCTAC-AGAC-------GCCTGCTGCCCCTGAGAGCCAAAATGACTTCCCAGTTGGCAAGGACA-GCCAGAGCCAGCTGCCCCCTC-CATGGAGGGACAGGACCAATGAGGTTTTCAAGGATGATGAGGAACCCGAGGGCCGCGGAGCACCC--CACCCACCTCTGAGACCCAGCCCCACGCTGCCCCCTTTGTCCTCT---------------GTCGGCAGCACCCACTCC-TCTCCTAGTCCTGACGTGA--TGGAGCTATGGACAGGAGGGACTGTGGCCTGGGAG--CC-----------------------------------------------------AGCTCTGGAGGGTGGCCTGGGGCCTGTGGACAGTGAACTGTGGCCCACTGTTGGGGTG-GC-TCCTCCCCCTC---CTC-CCC----CCATAGCCCATCTG--CCAGAGATGAAGGGCAGGGACAACCCCCTGGAGCC-GAGGACTCCCACCTT-CCCAACCCCAGGACCAGGCTCATGGGACGTGC--AGACTGTGGCAGTGTGGGGGACCTTCCTCCCCAC-AACCCTGAC-TGGC--CTCGGGCACAC------ACCT---GAGCCTGCCCTGAACCCAG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113750663 540 - 132174527 GGCCCAGGGTTTCCCCTGATGATATGC-AGAC-------GCCTGCCGCCCCTGGGAGCCAAAATCACTT---GGTTGGTGAGGATA-GCCAGCGCCAGCTGCCCCCTC-CATGGTGGGACAGGACCAATGAGGTTTCCGAGGATGATGAGGAACCTGGGGGCCGCATAGCCCCC--CACCTGCCCCCGAGACCCAGCCCCACGCTGCCCCCTTTGTCCCCT---------------GTCAGCAGCACCCACTCC-TCTCCTGGTCCTGATGTGG--TGGAACTGTGGACAGGAGAGACTGTGACTTGGAAG--CC-----------------------------------------------------AGCTCTGGAGGGTGGCCTGGGGCCTGGGGACAGTGAGCTAAGGCCCACTGTGGAGGTG-GC-TCCTCCCCTTC---CTC-CTC----CCATAGCCCCTCTG--CCAGAGATGGAAGGCAGAGACAGCCCCCTGAAGCC-GGGGACTCCCAACTC-CCCAACCCCAGGACCAGGCTCCTGGGACCTGC--AGCCTGTGGCAGTTTGGACCACCTTCCTCCCCAT-GACACTGAC-TGGC--CTTAGGCACACACCTGAGCCT---GAGCCTGCCCCGAGCCCGG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   88779 528 -    125141 GGCCCAGGGTTTCCCCTAATGGCGTGC-AGAC-------GCCTATCGCCCCTGGGAGCCAAAATGACTT---GGTTGGCGAGGACA-GCCAGCGTCAGCTGCCCCCTC-CGTGGTGGGACAGGACCAATGAGGTTTCCAAGGACGATGAGGAACCCGGGAGCCACAGAGCCCCC--CACCTGCCCTCGAGACCCAACCCCACGCTGCCCGCTTTGTCCCCT---------------GTCGGCAGCACCCACTCC-TCTCCTGTTCCTGATGTGG--TGGAGCTGTGGACAGGAGGGACTGTAGGCTGGAAG--CC-----------------------------------------------------AGCTCTGGAGGGTGGCCTGGGGCCTGGGGACAGTGAGCTGAGGCCCACTGTGGAGGCG-GC-TCCTCCCCTTC---CTC-CTC----CCATAGCCCCTCCG--CCAGAG------------GACAGCCCCCTGCAGCC-GGGGACTCCCAACTC-CCCAACCCCAGGACCAGGGTCCTGGGACCTGC--GGACTGTGGCAGTGTGGGGCACCTTCCTCCCCAC-GACCCAGAC-TGGC--GTCGGGCGCACACCTGAGCCT---GAGCCTGCCCCGAGCCCGG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             97545 540 +  11725426 GGCCCAGGGTTTCCCCTGATGGTGTGC-AGAT-------GCCTGCCACCCCTGGGAGCCAAAATGACTT---GGTTGGTGAGGACA-GCCAGCGCCAGCTGCCCTCTC-CATGGCGGGACAGGACCAATGAGGTTTCCAAGGACAATGAGGAGCCCGGGGGCCGCAGAGCCCCC--CACCTGCCCCTGAGACCCAGTCCCACGCTGCCCCCTTTGTCCCCT---------------GTCGGCAGCACCCATTCC-TCTCCTGGTCCCGATGTGG--TGGAGCTGTGGACAGGAGGGACTGTGGCCTGGAAG--CC-----------------------------------------------------GGCTCTGGAGGGTGGCCTGGGGCCTGGGGACAGTGAGCTGAGGCCCACTGTGGAGGCG-GC-TCCTCCCCTTC---CTC-CTC----CCATAGCCCCTCCG--CCAGAGACGGAAGGCAGGGACAGCCCCCTGCAGCC-GGGGACTCCCAACTC-CCCAGCCCCAGGACCAGGCTCCTGGGACCTGC--GGACCGTGGCAGTGTGGGGCACCTTCCTCCCCAT-GACCCTGAC-TGGC--CTTGGGCACACAcctgagcct---gagcctgccccgagcccgg
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            690641 540 +    730879 GGCCCAGGGTTTCCCCTGATGGCGTGC-AGAT-------GCCTGCCGCCCCTGGGAGCCAAAATGACTT---GGTTGGTGAGGACA-GCCAGCGCCAGCTGCCCCCTC-CATGGCGGGACGGGACCAATGAGGTTTCCAAGGACAATGAGGAACCCGGGGGCCGCAGAGCCCCC--CACCTGCCCCCGAGACCCAGTTCCACGCTGCCCCCTTTGTCCCCT---------------GTCGGCAGCACCCACTCC-TCTCCTCGTCCTGATGTGC--TGGAGCTGTGGACAGGAGGGACTGTGGCCTGGAAA--CC-----------------------------------------------------AGCTCTGGAGGGTGGCCTGGGGCCTGGGGACAGTGAGCTGAGGCCCACTGTGGAGGCG-Gc-tcctccccctc---ctc-ctc----cCATAGCCCCTCCG--CCAGAGATGGAGGGCAGGGACAGCCCCCTGCAGCC-GGGGCCTCCCAACTC-CCCAACCCCAGGACCAGGCTCCTGGGACCTTC--GGACTGTGGCAGTGTGGGGCACCTTCCTCCCCAC-GACCCTGAC-TGGC--CTCAGGCACACACCTGAGCCT---GAGCCTGCCCTGAGCCCAG
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5786785 531 -  36342412 GGCCCCCTGCTTCAGTTCTTGGCATGC-TTAC-------ACCTGCTGCCCCTGGGGGCCAAGATGAGCTCCTAATAGGGGAGGACA-GCCAGAGCCAGCTGCCCCCTC-TGTGGCAGGACAGGACCAATGAGGTTTCCAAGGATGATGAGGAACCTGTGGGCCATGGAGTATCC--CTCCTGCCCTCAAGACCCAGCCCAACGCTGCCCCCTTTGCCCACC---------------GTTGAACCCAGCCCCTCC-TCTCCTAGACCTGATGTTT--CAGAGCCGTGGACAGGTGGCACTATGGCCTGGGAG--CC-----------------------------------------------------AGCTCTGGAGGGTGGTCCAGGGCCTGTGGACAGTGAGCTGTGGCCCACTGT------G-GC-TCCTCTCCTTC---CTT-CCT----C---AGCTGCTCTG--CCTGAGATTAAGAGTGGGGACAACCCCCCGGGGCT-GGGGACTCCCACCTA-TTCACCCTCAGGACTAGGCTTATGGGACCTAC--AGACTCTGGCAACCCCAGGGACCTTCCTTGGGAA-AACTCTGAC-TGGC--AGAGGGCACAT------GCCTTGGGTGACTGCCCTGAGCCCAG
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90193556 510 + 124595110 GGCCCCCTGCTTCAGTTGATGATATGA-TGAC-------ACCTGTTGGCCCTGGAAACCCTGATGAGTTGCTAGTGAAAGAAGATG-AGCAGAGCCCACCATCCACTC-CATGGTCTGATAGGA---ACAAACTTTCTACAGATGGTAA---CCCCTTGGGTCATACATCCCCT--GCCCTGCCCCAAAGCCCTATCCCCACACAGCCCTCTCCACCCTCC---------------ATCAGTCCTACCCAAGCT-TCTCCGAGTCCTGATGTGG--TGGAGGTGTCGACAGGATGGAATGCGGCCTGGGAC--CC-----------------------------------------------------TGTGCTAGAGGCTGACCTGAAGCCCGGACACGGTGAGCTGCCGTCCACTGTGGAGGTG-GC-TTCTCCTCCAC---TTC-TTC----CCATGGCCACTGTG--CCAGGCATCTGGGGCAGGGACAGCCCTCTTGAACC-AGGAACGCCTACCTT-TTCCAGCCCAGAACTGAGCTCACAGCACCTAA--AAACTCTGACAATGCCTGGGACCTTGCTTTTGAC-AGTACCAAC-TGAC--CTGAGGAGCCC------GG------------------------
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58217409 489 +  91889043 AGCCCCCGGTGTGGGTCAGTGGCAAGG-ACAC-------ACCTGCTGCCCCCGGAAGCCACAACAGGCTCCCGGGAGGGGAGGACC-GCCAGAGCCAGCCACCCCCTC-CGTACTGGCAGAGGACCAACGAGCTCTCTGAGGACGAGGAGGAAGCCTTCGGTGGTGGAGCAACC--GGCCTGCCCCAAGGACGGCGCCCCACGTCACCCCCTTGGTCCTCC---------------ATCCACACTCGCCACACC-TCCCCAAGTCCTGACGTGG--GAGACCTGTGGACCGTGGGGACAGTGGCCTGGGAA--CC-----------------------------------------------------AGCTCCAGAAGGCAGCCCGGGGCCTATGGACACTGAGCTACGGCCCACCGTCGGGGGGCGC-CCTTCTACTCC---TTC-CCC----CCA----CGCTCTG--CCTGAGACCTGGGGTGGAGACGGCCCCCTGGAACC-GGGGACTCCCACCAC-TGCAGCCCCA------------TGGGACCTGC--AGACCCCGGTCCTGCCAGGGACCTTCCTTCCGAC-AGCCC-----AGGG--CCCAG--------------------------------------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  852023 531 +   1727078 GGTCCCCTGCTTCAGGGGGTGGCATGG-AGAC-------AACTGCTACTCCCAGTAGCCAGAAGGAGCGCCTGGGCGGGGAGGACA-GCCAGAGTCAGA---CCCCTC-CATGGTGGGAGAGGACCAATGAGGTTTCTGAGGATGAGG------CCTTAGACCACAGAGCACCG--CGCTTGCCCCAGAGACCCAGCTCCATGCTGCCCCCTTCGCCCTCT---------------ATCAGCACCACCACCCCC-TCTCCTGGTCCTGGCGTGG--TAGAGCTGTCAACAGGAGGGGCCAGGGCCCAGGAC--CC-----------------------------------------------------CGCACCACAGGGGGGCCTGGAGCCAGTGGGAGGTGAGCTGTGGCCCACCGTCGGGGCA-GC-ACCTCACCTGC---CTC-CTG----CCACAGCCATTCTG--CCCAAGACCCTGGGCAGGGCCCACCCCCTAGAGCC-GGGGATTCCCACTTT-TGCAACCCCAGGATTGATACCACAAGATCTGC--AGATTCCGGCAGTGCCAGGGACCTTCCTTCCACC-AGTTCTGGC-TGGC--TTGGTGCACAC------TCCTTGGATGACTGCCCCCAGCCCAG
i dasNov3.JH579681               C 0 C 0
e rheMac8.chr7                    59998141   1 + 169600520 I

a score=230327.000000
s hg38.chr15_KI270850v1_alt          38071 21 +    430880 GACCCAAGGGTCAGCCTGAGT
s panPan2.chr15                   23064183 21 -  99763055 GACCCAAGGGCCAGCCTGAGT
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            329370 21 -    378907 GACCCAAGGGTCAGCCTGAGT
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     11671 21 -     28805 GACCCAAGGGCCAGTCTGAGT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61596604 21 + 171882078 GACCCAAGGGCCAGCCTGAGT
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3920142 21 +   4820037 GACCCAAGGGCCAGCCTGAGT
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9782678 21 +  10730278 GACCCAAGGGCCAGCCTGAGT
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1324703 21 +  24206276 GACCCAAGGGCCAGCCTGAGT
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3924045 21 +   4030761 GACCCAAGGGCCAGCCTGAGT
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4029947 21 +   5013933 GACCCAAGGGCCAGCCTGAGT
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113751203 21 - 132174527 GACCCAAGGGCCAGCCTGAGT
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   89307 21 -    125141 GACCCGAGGGCCAGCCTGAGT
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             98085 21 +  11725426 gacccgagggccagcctgagt
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            691181 21 +    730879 GACCCGAGGGCCAGCCTGAGT
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5787316 21 -  36342412 GACCTTTGGGCCCGGCTGAGT
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90194066 21 + 124595110 GACCATCGGGCCAGCCACAGA
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58217898 16 +  91889043 GACCTGAGGACCAGCC-----
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  852554 21 +   1727078 GACCCTCGGGCCACCCTGAGC
i dasNov3.JH579681               C 0 C 0
e rheMac8.chr7                    59998141  1 + 169600520 I
e panTro5.chr15                   59829556 46 +  83230942 I

a score=497020.000000
s hg38.chr15_KI270850v1_alt          38092 42 +    430880 CCCTCAGCCCTGAGGTGCCCCTGAGCTCTAGGCTGC------TGTCCA
s panTro5.chr15                   59829602 40 +  83230942 CCCTCAGCCCTGAG-TGCCC-TGAGCTCTAGGCTGC------TGTCCA
i panTro5.chr15                  I 46 I 41945
s panPan2.chr15                   23064204 42 -  99763055 CCCTCAGCCCTGAGGTGCCCCTGAGCTCTAGGCTGC------TGTCCA
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            329391 42 -    378907 CCCTCAGCCCTGAGGTGCCCCTGAGCTCTAGGCTGC------TGTCCA
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     11692 42 -     28805 CCCTCAGCCCTGAGGTGCCCCTGAGCTCTAGGCTGC------TGTCCA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61596625 42 + 171882078 CCCTCAGCCCTGAGGTGCCCCTGAGCTCTAGGCTAC------TGTCCA
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3920163 42 +   4820037 CCCTCAGCCCTGAGGTGCCCCTGAGCTCTAGGCTAC------TGTCCA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9782699 42 +  10730278 CCCTCAGCCCTGAGGTGCCCCTGAGCTCTAGGCTAC------TGTCCA
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1324724 42 +  24206276 CCCTCAGCCCTGAGGTGCCCCTGAGCTCTAGGCTAC------TGTCCA
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3924066 42 +   4030761 CCCTCAGCCCTGAGGTGCCCCTGAGCTCTAGGCTAC------TGTCCA
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4029968 42 +   5013933 CCCTCAGCCCTGAGGTGCCCCTGAGCTCTAGGCTGC------TGTCCA
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113751224 42 - 132174527 CCCTCAGACCTGAGGTGCCCCTGAGCTCTGGGCTGC------TGTCCA
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   89328 42 -    125141 CTCTCAGCCCTGAGGTGCCCCTGAGCTCTGGGCTGC------TGTCCA
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             98106 42 +  11725426 ccctcagccctgaggtgcccctgagTTCTGGGCTGC------TGTCCA
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            691202 48 +    730879 CCCTCAGCCCTGAGGTGCCCCTGAGCTCTGGGCTGCTGTCCATGTCCA
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5787337 42 -  36342412 CCCCCAGCCCTGAGGCAACCCTGAGTTCTGGGCTAC------CATCCA
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90194087 42 + 124595110 CCCCTAACCTTGAGGGAACCCAGAGCCCTGGGTTGC------TGCCTA
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58217914 29 +  91889043 -------------AGTGCCCCCCCACCCCACATCAC------GGCCCA
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  852575 42 +   1727078 ACCCCAGCCCTGAGGCGCTCCCCAGCTCGGTGCTAC------CCTCCA
i dasNov3.JH579681               C 0 C 0
e rheMac8.chr7                    59998141  1 + 169600520 I

a score=601367.000000
s hg38.chr15_KI270850v1_alt          38134 51 +    430880 TGCCAGCTTGGGACAGCCCCGCCAACAGCCACAGAGCCCCTGAGACCCAGC
s panTro5.chr15                   59871587 51 +  83230942 CACCAGCTTGGGACAGCCCCGCCAACAGCCACAGAGCCCCTGAGACCCAGC
i panTro5.chr15                  I 41945 T 41940
s panPan2.chr15                   23064246 51 -  99763055 CACCAGCTTGGGACAGCCCCGCCAACAGCCACAGAGCCCCTGAGACCCAGC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            329433 50 -    378907 -TGCAGCTTGGGACAGCCCCGCCAACAGCCACAGAGTCCCTGAGACCCAGC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     11734 51 -     28805 CGCCAGCTTGGGACAGCTCCACCAACAGCCACAGAGCCCCTGAGACCCAGC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61596667 51 + 171882078 CGCCCGCTTGGGACAGCCCCGCCAACAGCCACAGAAACCCTGAGACCCAGC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3920205 51 +   4820037 CGCCCGCTTGGGACAGCCCCGCCAACAGCCACAGAACCCCTGAGACCCAGT
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9782741 51 +  10730278 CGCCCACTTGGGACAGCCCCGCCAACAGCCACAGAACCCCTGAGACCCAGC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1324766 51 +  24206276 CGCCCGCTTGGGACAGCCCCGCCAACAGCCACAGAACCCCTGAGACCCAGC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3924108 51 +   4030761 CGCCCGCTTGGGACAGCCCCGCCAACAGCCACAGAACCCCTGAGACCCAGC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4030010 51 +   5013933 CGCCAGCTTGGGACAGCCCCGCCAACAGCCACAGAACCCCTGAGACCCAGC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113751266 51 - 132174527 TGCCAGCTTGGGATAGCCCTGCAAACAGCCGCAGAGGCCCTGAGACCCAGC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   89370 51 -    125141 CGCCAGCTTGGGACAGCCCTGCAAACAGCCGCAGAGCCCCTGAGACCCAGC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             98148 51 +  11725426 CGCCAGCTTGGGACAGCCCTGCAAAcagccgcagagcccctgagacccagc
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            691250 51 +    730879 CGCCAGCTTGGGATAGCCCTGCAAACAACCGCAGAGCCCCTGAGACCCAGC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5787379 51 -  36342412 GACCAGATCAGAACAGTATCACCAGCAGCAGCAGAGCCCCTGAGGCCCAGC
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90194129 51 + 124595110 CACCAGCTCGGGAGACTCAAACTAACAGTAGCAAGGACCCCGAGGTCCAGC
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58217943 48 +  91889043 CACCAGCTCAGGACGGGTCAGCCGATGG---CAGAGTCCCCAAGGCCCAGC
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  852617 48 +   1727078 TGCCAGCTCAGGACAGTCCCACCAACAGCAGCAGAG---CTGAGGCCCAGC
i dasNov3.JH579681               C 0 C 0
e rheMac8.chr7                    59998141  1 + 169600520 I

a score=632099.000000
s hg38.chr15_KI270850v1_alt          38185 62 +    430880 CACTGCCTCCCAGCCTGGCTGAAGCGGGGCCCCCCACGGACCCGTTGGTTGTCAGGAACGCC
s panTro5.chr15                   59829698 62 +  83230942 CACTGCCTCCCAGCCTGGCTGAAGCGGGCCCCCGCAGTACGCCGTTGGTTGTCAGGAACGCC
i panTro5.chr15                  T 41940 I 41940
s panPan2.chr15                   23064297 62 -  99763055 CACTGGCTCCCAGCCTGGCTGAAGCGGGGCCCCCCGCGGACCCGTTGGTTGTCAGGAACGCC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            329483 62 -    378907 CGCTGGCTCCCAGCCTGGCTGAAGCGGGGCCCCCCGCGGACCCGTTGGTTGTCAGGAATGCC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     11785 62 -     28805 CGCTGGCTCCCAGCCTGGCTGAAGTGGGGCCCCCCACGGACCCATTGGTTGTCAGGAATGCC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61596718 62 + 171882078 CGCTGGCTCCCAGCCTGGCTGAAGCTGTCTCCCCCGCGGACCCGTTGGCTGTCAGGAACGCT
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3920256 62 +   4820037 CGCTGGCTCCCAGCCTGGCTGAAGCCGTCTCCCCCGCGGACCCGTTGGCTGTCAGGAACGCT
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9782792 62 +  10730278 CACTGGCTCCCAGCCTGGCTGAAGCCGTCTCCCCTGCGGACCTGTTGGCTGTCAGGAACGCT
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1324817 62 +  24206276 CGCTGGCTCCCAGCCTGGCTGAAGCCGTCTCCCCCACGGACCCATTGGCTGTCAGGAACGCT
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3924159 62 +   4030761 CGCTGGCTCCCAGCCTGGCTGAAGCCGTCTCCCCTGCGGACCTGTTGGCTGTCAGGAACGCT
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4030061 62 +   5013933 CGCTGGCTCCCAGCCTGGCTGAAGCAGTCTCCCCTGCGGACCTGTTGGCTGTCAGGAACGCT
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113751317 62 - 132174527 CCCCGGCCCCCACCCTGGCTGAGGCGGGGCCCCCTGTGGACCCGCTGGCTGCCAGGAATGCT
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   89421 62 -    125141 CCCCGGCCCCCAGCCTGGCTGAAGCGGAGCCCCCTGTGGACCCGCTGGCTGCCAGGAATGCC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             98199 62 +  11725426 cccccgcccccagccTGGCTGAGGTGGGGCCCCCTGTGGACCCGCTGGCTGCCAGGAATGCC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            691301 62 +    730879 CCCCGGCCCCCAGCCTGGCCGAGGCGGGGCCCCCTGTGGACCCACTGCCTGCCAGGAACGCC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5787430 62 -  36342412 CCCTGGACCCCAGCCTGGCTAAGGAGGGGTCTCCCATGGACCTGCTACCTGCCAGGAATGCC
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90194180 62 + 124595110 CTTTGCAGCCCAGCCTAGAGGAGGATGGTGACCCCGCAGATCCACTGCCTGCCAGGAATGCC
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58217991 47 +  91889043 CTGTGGACCCCAGCCCGGCCAA---------------GGACCCCCCACCCGCCCAGAATGCC
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  852665 62 +   1727078 TTCCAGACCCCAGCCCGGCTGAGGAGGGGCCCCCTGTGGACCTGCTGGCTGCCAGGAACGCC
i dasNov3.JH579681               C 0 C 0
e rheMac8.chr7                    59998141  1 + 169600520 I

a score=1736188.000000
s hg38.chr15_KI270850v1_alt          38247 182 +    430880 GGCTGACAAGTGGGAAACTGGAGCGAGGCAAGTGGTGTGGG---CTGGGCGGGCAGGGA-GTTTGCGCAGGACCTTGGTGACT--ATTTCCTCATCTGAAAATGAGCAGAG-------TGGGACGCAG--GCGCCGTCTGTCT----------------CGCCTT---CCTTG-GGGCGGG-----GGTT---------------CCCAGGATTAGGGGA---------ATG---------------------------------------AGGGGA--------------------------------------------------CCTGGGGC
s panTro5.chr15                   59871700 182 +  83230942 AGCTGACAGGTGGGAAACTGGAGCGAGGCAAGTGGTGTGGG---CTGGGCGGGCAGGGA-GTTTGCACAGGACCTTGGTGGCT--GTTTCCTCATCTGAAAATGAGCAGAG-------TGGGACACAG--GCTCCGTCTGTCT----------------CGCCTT---CCTTG-GGGCAGG-----GGTT---------------CCCAGGATTAGGGGA---------ATG---------------------------------------AGGGGA--------------------------------------------------CCTGGGGC
i panTro5.chr15                  I 41940 C 0
s panPan2.chr15                   23064359 182 -  99763055 AGCTGGCAAGCGGGAAACTGGAGCGAGGCAAGTGGTGTGGG---CTGGGCGGGCAGGGA-GTTTGCACAGGACCTTGGTGGCT--GTTTCCTCGTCTGAAAATGAGCAGAG-------TGGGACACAG--GTGCCGTCTGTTT----------------CGCCTT---CCTTG-GGGCAGG-----GGTT---------------CCCAGGATTAGGGGA---------ATG---------------------------------------AGGGGA--------------------------------------------------CCTGGGGC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            329545 182 -    378907 AGCTGACAAGTGGGAAACTGCAGCGAGGCAAGTGGCGTGGG---CTGGGCGGGCAGGGA-GTTTGCGCAGGACCTTGGTGACT--GTTTCCTCATCTGAAAATGAGCAGAG-------TGGGACACAG--GCGCCGTCTGTCT----------------CGCCTT---CCTTG-GGGCGGG-----GGTT---------------CCCAGGAATAGGGGA---------ATG---------------------------------------AGGGGA--------------------------------------------------CCTGGGGC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     11847 182 -     28805 AGCTGGCAAGCGGGAAACTGGAGCGAGGCAAGTGGTGTGGG---CTGGGCGGGCAGGGA-GTTTGTGCGGGACCTTGGTGACT--GTTTCCTCATCTGAAAATGAGCAGAG-------TGGGACACAG--GTGCCATCTGTCT----------------AGCCTC---TCCTG-GGGCAGG-----GGTT---------------CCCAGGATT-GGGGG---------ATG---------------------------------------AGGGGAC-------------------------------------------------CCCGGAGC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61596780 183 + 171882078 AGCTGGCAAGCAGGAAACTGGAGCCAGGCAAGTGGTGTGGG---CTGGGTGGGCTGGGA-GTTTGCGCGGGACCTTGGTGACT--GTTTCCTCATCTGAAAATGAGCAGAG-------TGGGACACAG--GTGCCATCTGTCT----------------TGCCTC---TCTTG-GGGCAGG-----AGTT---------------CCCAGGATTAGGGGA---------ATG---------------------------------------AGGGGAT-------------------------------------------------CTCGGGGC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3920318 183 +   4820037 AGCTGGCAAGCGGGAAACTGGAGCCAGGCAAGTGGTGCGGG---CTGGGTGGGCTGGGA-GTTTGCGCGGGACCTTGGTGACT--GTTTCCTCATCTGAAAATGAGCAGAG-------TGGGACACAG--GCGCCATCTGTCT----------------CGCCTC---TCTTG-GGGCAGG-----AGTT---------------CCCAGGATTAAGGGA---------ATG---------------------------------------AGGGGAC-------------------------------------------------CTTGGGGC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9782854 183 +  10730278 AGCTGGCAAGCGGGAAACTGGAGCCAGGCAAGTGGTGCGGG---CTGGGTGGGCTGGGA-GTTTGCGCGGGACCTTGGTGACT--GTTTCCTCATCTGAAAATGAGCAGAG-------TGGGACACAG--ACGCCATCTGTCT----------------CACCTC---TCTTG-GGGCAGG-----AGTT---------------CCCAGGATTAAGGGA---------ACG---------------------------------------AGGGGAC-------------------------------------------------CCTGGGGC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1324879 183 +  24206276 AGCTGGCAAGCAGGAAACTGGAGCCAGGCAAGTGATGCGGG---CTGGGTGGGCTGGGA-ATTTGCGCGGGACCTTGGTGACT--GTTTCCTCATCTGAAAATGAGCAGAG-------TGGGACACAG--GTGCCATCTGTCT----------------CGCCTT---TCTTG-GGGCAGG-----AGTT---------------CCCAGGATTAGGGGA---------ATG---------------------------------------AGGGGAC-------------------------------------------------CTCGGGGC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3924221 183 +   4030761 AGCTGGCAAGCGGGAAACTGGAGCCAGGCAAGTGGTGCGGG---CTGGGTGGGCTGGGA-GTTTGCGCGGGACCTTGGTGACT--GTTTCCTCATCTGAAAATGAGCAGAG-------TGGGACACAG--GCGCCATCTGTCT----------------CGCCTC---TCTTG-GGGCAGG-----AGTT---------------CCCAGGATTAAGGGA---------ATG---------------------------------------AGGGGAC-------------------------------------------------CCTGGGGC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4030123 183 +   5013933 AGCTGGCAAGCGGGAAACTGGAGCCAGGCAAGTGGTGCGGG---CTGGGTGGGCTGGGA-GTTTGCGGGGGACCTTGGTGACT--GTTTCCTCATCTGAAAATGAGCAGAG-------TGGGACACAG--GTGTCATCTGTCT----------------CGCCTC---TCTTG-GGGCAGG-----AGTT---------------CCCAGGATTAGGGGA---------ATG---------------------------------------AGGGGAC-------------------------------------------------CCCGGAGC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113751379 183 - 132174527 AGCTGGCAAGCTGGAGACTGGAGCAAGGCAAGTGGTGCAGG---CCCGGTTGGCGGGGA-GTTCGCGTGGGACCTTGGTGATT--GTTGCCTCATCTGAAAATGAGCAGAG-------TGGGACACAG--GCGCTGTCCGTCC----------------CACCTC---CCTCA-GGGCAGG-----GGTT---------------CCCAGGATTAGGGGG---------ATG---------------------------------------AGGGGAC-------------------------------------------------CCCAGGGC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   89483 185 -    125141 AGCTGGCAAGCTGGAAACTGGAGCGAGGCAAGTGATGCGGG---CCGGGCTGGCGGGGA-GTTTGCCCGGGACCTTGGTGATT--GTTGCCTCACCTGAAAGTGAGCAGCG-------TGGGACACAGGCGCGCGGTCTGTCC----------------CGCCTC---CCTCA-GGGCAGG-----GGTT---------------CCCAGGATTAGGCGG---------ATG---------------------------------------AGGGGAC-------------------------------------------------CCCAGGGC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             98261 183 +  11725426 AGCTGGCAAGCTGGAAACTGGAGCAAGGCAAGTGGTGTGGG---CCGGGCTGGCGGGGA-GTTTGCGTGGGACCTTGGTGATT--GTTGCCTCATCTGAAAGTGAGCAGAG-------TGGGACACAG--GTGCCGTCTGTCC----------------CGCCCC---CCTCG-GGGCAAG-----GGTT---------------CCCAGGATTAGGCGG---------ATG---------------------------------------AGGGGTC-------------------------------------------------CACAGGGC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            691363 181 +    730879 AGCTGGCAAGCTGGAAACTGGAGTGAGGCAAGTG-CACGGG---CCGGGCTGGCGGGGA-GTTTGCGTGGGTCCTTGGTGACT--GCTGCCTCATCTGAAAGTGAGCAGAG-------TGGGACACAG--GCGCCGTCTGTCC----------------TGCCTC---CCTTG-GGGCAGG-----GGTT---------------CCCAGGATTAGGGGG---------ATG---------------------------------------AGGGGAC-------------------------------------------------C-CAGGGC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5787492 170 -  36342412 AGCTGGCAAGTGGGAAACTGGAGCCAGGCAAGTGGTGTAGG---TCAGGCGGGCTGTGA-GTTTGTGCTGGACTTCAGCAGTTTAACCTCCTCATCTGAAAATGAGCAGAG-------CAGGACATGG--GCCCTGGCCATTC----------------TGTCTC---CTGGG-GGGCAGGGTACTGGCT---------------GCCC--------------------ATG---------------------------------------AGGGAT----------------------------------------------------------
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90194242 178 + 124595110 AGCTGGCAAGTAGGAAACTGGAGCCAGGTGAGTTGTGTAGA-GCCAGGGATGGTGGGAACGTTTGAGCAGGACCCT-GCGACTCAGTTT-------------TGAGCAGAG-------CAAGACACAG--CC-----CTGTTC----------------ATCCTTGGAGAGTG-GCGTAAC-----GGTT---------------CCTGGGATGAGCCAACTGACAGCCATG---------------------------------------ATGGGC----------------------------------------------------TGAGGC
i mm10.chr9                      C 0 I 115
s canFam3.chr3                    58218038 196 +  91889043 AGCTGGGAGGTGGGGAGCTGGAGTGAGGTAAG------GGG---C--------CAGGGA-A---GAGCAGGACCTC----ACT--GTGTCCTCTTCAGCACATGGCCCACGGGGGTCCCGGGGTACAG--AAACCGGCGGCCCGAGCTGGGAGCAGCGATGCCCT---CCGTG-TGCCAGG-----GGGCCATCCGCCCTGTCAGCCTCAGTTTCTTAAG---------ATG---------------------------------------AGGAGAC-----------------------------------------------------GGGC
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  852727 277 +   1727078 AGCTGGGAAGTGGGAAACTGGAGCCAGGCAAGTGGTACAGGGGTCAGGGTGGACTGGGG-ATTGGAGtagctcctcagtgactcagtttccttatctgagaatgagcagag-------caggacacaa--accctgtttgccc----------------tacctt---ccaggAGGGCAGG-----AATT---------------CCTAGGATTGGGCAA---------CTGACTCAAGCTCCTCGAGGTGGGAGGAGCATTGTCCCACTCAGGGGTCCCTAAAAGTGATCAAGACCAGATGGTCCAGTCATCTTGCCCAGATGTGACCTGGGGC
i dasNov3.JH579681               C 0 C 0
e rheMac8.chr7                    59998141   1 + 169600520 I

a score=331388.000000
s hg38.chr15_KI270850v1_alt          38429  45 +    430880 --------------------------CCATTC---------------------------------------CTGG--------------------GCAGCACA----GGGGGCCTC-------AGGGAAGGCAG------GGGCAGG
s panTro5.chr15                   59871882  45 +  83230942 --------------------------CCATTC---------------------------------------CTGG--------------------GCAGCACA----GGGGGCCTC-------AGGGAAGGCAG------GGGCAGG
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                   23064541  45 -  99763055 --------------------------CCATTC---------------------------------------CTGG--------------------GCAGCACA----GAGGGCCTC-------AGGGAAGGCAG------GAGCAGG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            329727  45 -    378907 --------------------------CCATTC---------------------------------------CTGG--------------------GCAGCACA----GGGGGCCTC-------AGGGAAGGCAG------GGGCAGG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     12029  45 -     28805 --------------------------CCATTC---------------------------------------CTGG--------------------GCAGCACA----GGGGGCTTC-------AGGGAAGGCAG------GGGCAGG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61596963  45 + 171882078 --------------------------CCACTT---------------------------------------CTGG--------------------GCAGCACA----GGGGGCCTC-------AGGGAAGGCAG------GGGCAGG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3920501  45 +   4820037 --------------------------CCATTT---------------------------------------CTGG--------------------GCAGCACA----GGGGGCCTC-------AGGGAAGGCAG------GGGCAGG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9783037  45 +  10730278 --------------------------CCATTT---------------------------------------CTGG--------------------GCAGCACA----GGGGGCCTC-------AGGGAAGGCAG------GGGCAGG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1325062  45 +  24206276 --------------------------CCACTT---------------------------------------CTGG--------------------GCAGCACA----GGGGGCCTC-------AGGGAAGGCAG------TGGCAGG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3924404  45 +   4030761 --------------------------CCATTT---------------------------------------CTGG--------------------GCAGCACA----GGGGGCCTC-------AGGGAAGGCAG------GGGCAGG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4030306  45 +   5013933 --------------------------CCACTT---------------------------------------CTGG--------------------GCAGCAAA----GGGGGCCTC-------AGGGAAGGCAG------GGGCAGG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113751562  45 - 132174527 --------------------------CCATTC---------------------------------------CTGA--------------------GCAGCACA----GGGGACCTC-------AGGGAAGCCAG------AGACAGG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   89668  44 -    125141 --------------------------CCATTC---------------------------------------CTGG--------------------GCAGCACA----GGGGGCCTC-------AGGGAAGCCAG-------GGCAGG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             98444  44 +  11725426 --------------------------CCGTTC---------------------------------------CTGG--------------------GCAGCACA----GGGGGCCTC-------AGGGAAGCCAG-------GGCAGG
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            691544  44 +    730879 --------------------------CCATTC---------------------------------------CTGG--------------------GCAGCACA----GGGGGCCTC-------AGGGAAGCCAG-------GGCAGG
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5787662  22 -  36342412 -----------------------------------------------------------------------------------------------------------GGAGGCCT---------GGTGAGGT---------GGGAAG
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90194535  53 + 124595110 --------------------------CCATTC---------------------------------------CTAG--------------------GCCACACAGAAGGAAGGCTTC-------AG--AAAGCAGCAAATCAAGCTGC
i mm10.chr9                      I 115 C 0
s canFam3.chr3                    58218234  49 +  91889043 -----------------------------CAC---------------------------------------CAGG--------------------AAGGTGTG----GGGTGGCACGAAATGGAGGGTGGCCAG------GAGCCGC
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  853004 129 +   1727078 CAGTTTGCCCAGGCAGGCCTTGGTTTCCACTCTGAGCAGTGGGCTTGGGGCACGATAGCCCATCTGTCTCTCTGGAGTCCCCAGAGGCCCGTCAAGCAGCACG----GGGGGTGG--------GGGGATGGCAG------CAGCAGG
i dasNov3.JH579681               C 0 I 114
e rheMac8.chr7                    59998141   1 + 169600520 I

a score=656976.000000
s hg38.chr15_KI270850v1_alt          38474  93 +    430880 CACA---------CTCTGGCAGCACAGCATGCCCCAG-G----ATGGAGCTGG---CTCAGACAGCTGTGC-AGTGGGGAGGGTCCCTG--TGT-GGCCACCAGGC--------CCAGTCCT-------
s panTro5.chr15                   59871927  93 +  83230942 CACA---------CTCTGGCAGCACAGCACGCCCCAG-G----ATGGAGCTGG---CTCAGACAGCTGTGC-AGTGGGGAGGGTCCCTG--CGT-CGCCGCCAGGC--------CCAGTCCT-------
i panTro5.chr15                  C 0 T 41951
s panPan2.chr15                   23064586  93 -  99763055 CACA---------CTCTGGCAGCACAGCACGCCTCAG-A----ATGCAGCTGG---CTCAGACAGCTGTGC-AGTGGGGAGGGTCCCCG--CGT-GGCTGCCAGGC--------CCAGTCCT-------
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            329772  93 -    378907 CACA---------CTCTGGCAGCACAGCATGCCCCAG-G----ATGGAGCTGG---CTCAGACAGCTGTGC-AGTGGGGAGGGTCCCTG--TGT-GGCCGCCAGGC--------CCAGTCCT-------
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     12074  93 -     28805 CACA---------CTCTGGCAGCACGGCACGCCCCAG-G----ATGGAGCTGG---CTCAGAGAGCTGTGC-AGTGGGGAGGGTCCCTA--CAT-GACTGCCAGGC--------CCAGTCCT-------
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61597008  92 + 171882078 CACG---------CTCTGGCAGCACAGCTCACCCCAG-G----ATGCAACTGG---CTCAGACAGCTGTG--AATGGGGAGGGTCCCCG--CAT-GGCTGCCAGGC--------CCAGTCCT-------
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3920546  93 +   4820037 CACG---------CTCTGGCAGCACAGCCCACCCCAG-G----GTGCAACTGG---CTCAGACAGCTGTGT-AATGGGGAGGGTCCCCG--CAT-GGCTGCCAGGC--------CCAGTCCT-------
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9783082  93 +  10730278 CACG---------CTCTGGCAGCACAGCCCACCCCAG-G----ATGCAACTGG---CTCAGACAGCTGTGT-AATGGGGAGGGTCCCCG--CAT-GGCTGCCAGGC--------CCAGTCCT-------
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1325107  92 +  24206276 CACG---------CTCTGGCAGCACAGCCCACCCCAG-G----ATGCAACTGG---CTCAGACAGCTGTG--AATGGGGAGGGTCCCCG--CAT-GGCTGCCAGGC--------CCAGTCCT-------
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3924449  93 +   4030761 CACG---------CTCTGGCAGCACAGCCCACCCCAG-G----ATGCAACTGG---CTCAGACAGCTGTGT-AATGGGGAGGGTCCCCG--CAT-GGCTGCCAGGC--------CCAGTCCT-------
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4030351  92 +   5013933 CACG---------CTCTGGCAGCACAGCACACCCCAG-G----ATGGAGCTGG---CTCAGACA-CTGTGC-AGTGGGGAGGGTCCCCA--CAT-GGCTGCCAGGC--------CCAGTCCT-------
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113751607  84 - 132174527 CACA---------CTCTGGGAGCACA-----CCCCAG-G----ATGGAGT-------TCAGACAGCTGTGC-AGTGGGGAGGATCCCCG--CAT-GGCCTTCAGGC--------CCAGTCCT-------
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   89712  87 -    125141 CACA---------CTCTGGCAGCACA-----CCCCAT-G----ACAGAGT-CA---CTCAGACAGCTGTGC-AGAGGGCAGGGTCCCCT--CAT-GGTCCACAGGC--------CCAGTCCT-------
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             98488  88 +  11725426 CACA---------CTCTGGCAGCACA-----CCCCAG-G----ACAGAGTTCA---CTCAGACAGCTGTGC-AGTGGGGACGGTCCCCT--CAT-GGCCCACAGGC--------CCAGTCCT-------
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            691588  88 +    730879 CACA---------CTCTGGCAGTACA-----CCCCAG-G----ACAGAGTTCA---CTCAGACAGCTGTGC-AGTGGGGAGGGTCCCTG--CAT-GGCCCGCAGGC--------CCAGTCCT-------
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5787684  51 -  36342412 AACA---------CT----------------CCCC----------------GG---CTCA-----CTATTC-TG----------CCCTC--CATAGGCCCCTGGGG--------CCAGTCT--------
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90194588 109 + 124595110 TACAAATCAAGTGCTCAGACTGGCCTACATGCCCCAGCA----ATGGGAATCATACCTTAGCTAGCTGTATGGGTAAGGAAGGCCTCTTTCCAT-GGCTCCCACAC--------CCAGTGCT-------
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58218283  78 +  91889043 GTCC---------CTC------------ATACTGCCG-G----ACAGGGTGCC---CCCTGACACCCTGCT-GGTGGGGAAGCCACCTC--CGT-GGCTCCCAGGC--------CCAGT----------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  853247 100 +   1727078 CACT---------CTCTGGC----TTGCATGCCCCAG-GGGACGGGGGGCTCA---CCCAGGCAGCTCCTC-AT-----GGGACCCCTG------GGCTGCCAGGTGAGCTACGCCAAACCTCAGAGTT
i dasNov3.JH579681               I 114 C 0
e rheMac8.chr7                    59998141   1 + 169600520 I

a score=156981.000000
s hg38.chr15_KI270850v1_alt          38567 23 +    430880 GCCCAGCAGG------CAG---C-AGCT-T-CCCT
s panTro5.chr15                   59830069 23 +  83230942 GCCCAGCAGG------CAG---C-AGCT-T-CGCT
i panTro5.chr15                  T 41951 C 0
s panPan2.chr15                   23064679 23 -  99763055 CCCCAGCAGG------CAG---C-GGCT-T-CCCT
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            329865 23 -    378907 GCCCAGCAGG------CAG---C-AGCT-T-CCCT
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     12167 23 -     28805 GCCCAGCAGG------CAG---C-GGTT-T-CCCT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61597100 23 + 171882078 GCCCAGCAGG------CAG---C-AGCT-T-CCCT
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3920639 23 +   4820037 GCCTAGCAGG------CAG---C-AGCT-T-CCCT
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9783175 23 +  10730278 GCCTAGCAGG------CAG---C-AGCT-T-CCCT
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1325199 23 +  24206276 GCCCAGCAGG------CAG---C-AGCT-T-CCCT
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3924542 23 +   4030761 GCCTAGCAGG------CAG---C-AGCT-T-CCCT
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4030443 23 +   5013933 GCCCAGCAGG------CAG---C-AGCT-T-CCCT
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113751691 25 - 132174527 GCCCAGAAGG------CAG---CAAGCT-TCCCCT
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   89799 24 -    125141 GCCCAGAAAG------CAG---CAAACT-T-CCTT
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             98576 24 +  11725426 GCCCAGAAAG------CAG---CAAGCT-T-CCCT
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            691676 24 +    730879 GCCCAGAAGG------CAG---CAAGCT-T-CCCT
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5787735 23 -  36342412 GCCCATCAGG------CCT---C-AGTT-T-CCCT
i otoGar3.GL873530               C 0 I 75
s mm10.chr9                       90194697 27 + 124595110 GCCTGGGAGGGTCGGACAGGTAT-AGCT-------
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58218361  9 +  91889043 ------------------------AGGG-C-CCCC
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  853347 23 +   1727078 GCCTGACCG-------CAG---C-AGAGGT-CCCT
i dasNov3.JH579681               C 0 C 0
e rheMac8.chr7                    59998141  1 + 169600520 I

a score=261378.000000
s hg38.chr15_KI270850v1_alt          38590 28 +    430880 GAGGCTCTGTCTGGCTCCTCCAGGCTGG
s panTro5.chr15                   59830092 27 +  83230942 GAGGTTCTGCTTGG-TCCTCCAGGCTGG
i panTro5.chr15                  C 0 I 41952
s panPan2.chr15                   23064702 28 -  99763055 GAGGCTGGACCTGGCTTCTCCAGGCTGG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            329888 28 -    378907 GAGGCTCTGCCTGGCTCCTCCAGGCTGG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     12190 28 -     28805 GAGGCTCCACCTAGCTCCTCCAGGCTGG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61597123 28 + 171882078 GAGGCTCGGCCTGGCTCCTCCAGGCTGG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3920662 28 +   4820037 GAGGCTCGGCCTGGCTCCTCCAGGCGGG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9783198 28 +  10730278 GAGGCTCGGCCTGGCTCCTCCAGGCTGG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1325222 28 +  24206276 GAGGCTCGGCCTGGCTCCTCCAGGCTGG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3924565 28 +   4030761 GAGGCTTGGCCTGGCTCCTCCAGGCTGG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4030466 28 +   5013933 GAGGCTCGGCCTGGCTCCTCCAGGCTGG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113751716 28 - 132174527 GAGGCTCAGCCTGGCTCCTCCAGGCTGG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   89823 28 -    125141 GAGGCTCAGCCTGGCTCCTCCACGCTGG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             98600 26 +  11725426 GAGGCTCAGCCTGGCTCCTCCGCGCT--
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            691700 28 +    730879 GAGGCTCAGCCCAGCTCCTCCAGGCTGC
i aotNan1.NW_018503093v1         C 0 C 0
s mm10.chr9                       90194724 26 + 124595110 GAGGCACAGTATGACTCCTCCAGATG--
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58218370 28 +  91889043 TGGGCTCAGCCTGGCTCTCCTTGCCTGG
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  853370 21 +   1727078 GACGCTCAGCCTGGCTCCGTC-------
i dasNov3.JH579681               C 0 C 0
e otoGar3.GL873530                 5787758 75 -  36342412 I
e rheMac8.chr7                    59998141  1 + 169600520 I

a score=889024.000000
s hg38.chr15_KI270850v1_alt          38618 104 +    430880 ACTCAGC---------------------------------CCACTGCTACCTGGCTCTGCCCTCAGTGGCTCCACCCTCCTTTGGCAGTGACCT-GC---A--GACGTCTGAGCTGC-AT-GA-AAGAAGCTGGCTAGTGCCCCCT
s panTro5.chr15                   59872071 103 +  83230942 ACTGAGC---------------------------------CCACTGCTACCTGGCTCTGCCCTCAGTGGCTCCACCCTCCTTTGGCAGTGAACT-GC---A--GGGGTCTGAGCTGC-CA-GA-AAGAAGCTGGCTAGTG-CCCCT
i panTro5.chr15                  I 41952 T 41897
s panPan2.chr15                   23064730 103 -  99763055 GCTCAGC---------------------------------CCACTGCCACCTGGCTCCGCCCTCAGTGGCTCCACCCTCCTTTGGCAGTGACCT-GC---A--GGGGTCTGAGCTGC-CA-GA-AAGAAGCTGGCTAGTG-CCCCT
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            329916 137 -    378907 ACTCAGCCCACTGCTACCTGGCCCTCCAGGCTGGACTCAGCCACTGCTACCTGGCTCTGCCCTCAGTGGCTCCACCCTCCTTTGGCAGTGACCT-GC---A--GACGTCTGAGCTGC-AT-GA-AAGAAGCTGGCTAGTGCCCCCT
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     12218 108 -     28805 GCTCAGC---------------------------------CCACTGCCACCTGGCTCCGCCCTCAGTGGCTCCACCCTCCTCTGGCAGTGACCT-GCCAAA--GGAGTCTGAGCTGCAAT-GA-AAGAAGCTGGCTAGTGCCCCCT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61597151 104 + 171882078 GCTCAGC---------------------------------CCACTGCCAGCTGGCTCTGCCCTCAGTGGCTCCACCCTCCTTTGACAGTGACCT-GC---A--GGCATCTGAGCTGC-AT-GA-AAGAAGCTGGCCAGGGCCCCCT
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3920690 104 +   4820037 GCTCAGC---------------------------------CCACTGCCACCTGGCTCTGCCCTAAGTGACTTCACCCTCCTTTGACAGTGACCT-GC---A--GGCATCTGAGCTGC-AT-GA-AAGAAGCTGGCCAGGGCCCCCT
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9783226 104 +  10730278 GCTCAGC---------------------------------CCACTGCCACCTGGCTCTGCCCTCAGTGGCTCCACCCTCCTTTGACAGTGACCT-GC---A--GGCATCTGAGCTGC-AT-GA-AAGAAGCTGGCCAGGGCCCCCT
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1325250 104 +  24206276 GCTCAGC---------------------------------CCACTGCCACCTGGCTCTGCCCTCAGTGGCTCCACCCTCCTTTGACAGTGGCCT-GC---A--GGCATCTGAGCTGC-AT-GA-AAGAAGCTGGCCAGGGCCCCCT
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3924593 104 +   4030761 GCTCAGC---------------------------------CCACTGCCACCTGGCTCTGCCCTAAGTGACTCCACCCTCCTTTGACAGTGACCT-GC---A--GGCATCTGAGCTGC-AT-GA-AAGAAGCTGGCCAGGGCCCCCT
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4030494 104 +   5013933 GCTCAGC---------------------------------CCACTGCCACCTGGCTCTGCCCTGAGTGACTCCACCCTCCTTTGACAGTGACCT-GC---A--GGCATCTGAGCTGC-CT-GA-AAGAAGCTGACTAGTGCCCTCT
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113751744 102 - 132174527 GCTCAGC---------------------------------CCACTGCCACCTGGCTCTGCCTTC--TAGCTCCACCCTTCTTTGGCAGTGACCT-GC---A--GGGGTCTGAGCTGC-AT-GA-AAGAAGCTGGCCAGTGCCCACT
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   89851 104 -    125141 GCTCAGC---------------------------------CCACTGCCACCTGGCTCTGCCCTCAATGGCTCCACCCTCCTTTGGCAGTGACCT-GC---A--GGGGTCTGAGCTGT-AT-GA-AAGAAGCTGGCCAGTGCCCCCT
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             98626  99 +  11725426 -----GC---------------------------------CCACTGCCACCTGGCTCTGCCCTCAATGGCTCCACCCTCCTTTGGCAGTGTCCT-GC---A--GGGGTCTGAGCTGC-AT-GA-AAGAAGCTGGCCAGTGCCCCCT
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            691728 100 +    730879 GCTCAGC---------------------------------CCACTGCCACCTGGCTCTGCCCTC--TGGCTCCACCCTCCTTTGG-AGTGACCT-GC---A---GGGTCTGAGCTGC-AG-GA-AAGAAGCTGGCCAGTGCCCCCT
i aotNan1.NW_018503093v1         C 0 C 0
s mm10.chr9                       90194750  92 + 124595110 -TTTCAA---------------------------------CCATTGTCAC---------CCTTCAAAGTC----CCCGCTTTTGTTAGGGATCTCAT---A--ATAGTCTGGGTTGT-ATGGG-AAAGAGATGACCAGTTCTCCTT
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58218398  83 +  91889043 ----------------------------------------CCCCTCCTACGTGGCCTCACCCTG------------CTCCTTT---AGGGGCCG-GC---G--AGTGTGTGAACTTG-AT-GGCCAGAAACTGACTGTGTCCCTCT
i canFam3.chr3                   C 0 I 4
s dasNov3.JH579681                  853391  89 +   1727078 ------------------------------------------CTTCCCACCC--CTCTGCCCTCAGTGGTT-----CTGCTTTGTCAGGGGCTT-GC---GGTGGAGTTTGAGCTGC-TT-GA-TGGAAGCTGGCTGCGCCCCAC-
i dasNov3.JH579681               C 0 C 0
e otoGar3.GL873530                 5787758  75 -  36342412 I
e rheMac8.chr7                    59998141   1 + 169600520 I

a score=47172.000000
s hg38.chr15_KI270850v1_alt          38722 5 +    430880 CCCTG-
s panTro5.chr15                   59830277 5 +  83230942 CCCTG-
i panTro5.chr15                  T 41897 C 0
s panPan2.chr15                   23064833 5 -  99763055 CCCTG-
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            330053 5 -    378907 CCCTG-
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     12326 5 -     28805 CCCTG-
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61597255 5 + 171882078 CCCTG-
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3920794 5 +   4820037 CCCTG-
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9783330 5 +  10730278 CCCTG-
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1325354 5 +  24206276 CCCTG-
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3924697 5 +   4030761 CCCTG-
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4030598 5 +   5013933 CCCTG-
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113751846 5 - 132174527 CCCTG-
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   89955 5 -    125141 CCCTG-
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             98725 5 +  11725426 CCCTG-
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            691828 5 +    730879 CCCTG-
i aotNan1.NW_018503093v1         C 0 C 0
s mm10.chr9                       90194842 4 + 124595110 CTCT--
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58218485 5 +  91889043 ACCTG-
i canFam3.chr3                   I 4 C 0
s dasNov3.JH579681                  853480 5 +   1727078 -CCCAC
i dasNov3.JH579681               C 0 C 0
e otoGar3.GL873530                 5787758 75 -  36342412 I
e rheMac8.chr7                    59998141 1 + 169600520 I

a score=298656.000000
s hg38.chr15_KI270850v1_alt          38727 27 +    430880 GGTCCCCAGATGGTCACTGCAGGAGAA
s panTro5.chr15                   59830282 27 +  83230942 GGTCCCCAGATGGTCACTGCAGAAGAA
i panTro5.chr15                  C 0 I 41897
s panPan2.chr15                   23064838 27 -  99763055 GGTCCCCagatggtcactgcaggagaa
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            330058 27 -    378907 GGTCCCCAGATGGTCACTGCAGGAGAA
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     12331 27 -     28805 GGTCCCCAGATGGTCACTGCAGGAGAA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61597260 27 + 171882078 GGTCCCCAGATGGTCACTGCAGGAGAA
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3920799 27 +   4820037 GGTCCCCAGATGGTCACTGCAGGAGAA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9783335 27 +  10730278 GGTCCCCAGATGGTCACTGCAGGAGAA
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1325359 27 +  24206276 GGTCCCCAGATGGTCACTGCAGGAGAA
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3924702 27 +   4030761 GGTCCCCAGATGGTCACTGCAGGAGAA
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4030603 27 +   5013933 GGTCCCCAGATGGTCACTGCAGGAGAA
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113751851 27 - 132174527 GGTCCCCAGATGGTCACTGCAGGAGAA
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   89960 27 -    125141 GGTCCCCAGATGGTCACTGCAGGAGAA
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             98730 27 +  11725426 GGTCCCCAGATGGTCACTGCAGGAGAA
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            691833 27 +    730879 GGTCCCCAGATGGTCACTGCAGGAGAA
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5787833 27 -  36342412 GGTCCCTAGATTGTCTCTGTGGGAAAA
i otoGar3.GL873530               I 75 C 0
s mm10.chr9                       90194846 18 + 124595110 -------AAATTGTCATTGTAAGAG--
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58218490 13 +  91889043 TGTCTTCCTATGG--------------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  853485 17 +   1727078 -GCCC---------CACTGTAGGAGGA
i dasNov3.JH579681               C 0 C 0
e rheMac8.chr7                    59998141  1 + 169600520 I

a score=434102.000000
s hg38.chr15_KI270850v1_alt          38754 43 +    430880 GCAAGCTTCTGTTCAGATTCCTAATTTTGGGGTGGGAAGGGGC
s panTro5.chr15                   59872206 43 +  83230942 GGAAGCTTCTGTTCAGATCCCTAATTTTGGGGTGGGAAGGGGC
i panTro5.chr15                  I 41897 C 0
s panPan2.chr15                   23064865 43 -  99763055 ggaagcttctgttcagatccctaattttggggtgggaaggggc
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            330085 43 -    378907 GCAAGCTTCTGTTCAGATTCCTAATTTTGGGGTGGGAAGGGGC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     12358 43 -     28805 GCAAGCTTCTgttcagatccctaattttggggcgggaaggagc
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61597287 43 + 171882078 GCAAGCTTCTGTTCAGATCCCTAATTTGGGGGTGGGAAGGGGC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3920826 43 +   4820037 GCAAGCTTCTGTTCAGATCCCTAATTTGGGGGTGGGAAGGGGC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9783362 43 +  10730278 GCAAGCTTCTGTTCAGATCCCTAATTTGGGGGTGGGAAGGGGC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1325386 43 +  24206276 GCAAGCTTCTGTTCAGATCCCTAATTTGGGGGTGGGAAGGGGC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3924729 43 +   4030761 GCAAGCTTCTGTTCAGATCCCTAATTTGGGGGTGGGAAGGGGC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4030630 43 +   5013933 GCAAGCTTCTGTTCAGATCCCTAATTTGGGGGTGGGAAGGGGC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113751878 43 - 132174527 ACAAGCTTCTGTTCAGATCCCTAATTTGAGGGTAGGAAGGGGC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   89987 43 -    125141 GCAAGCTTCTGTTCAGATCCCTAACTTGGAGGTGGGAAGGGGC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             98757 43 +  11725426 GCAAGCTTCTGTTCAGATCCCTAATTTGGGTGTGGGAAGGGGC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            691860 43 +    730879 GCAAGCTTCTGTTCAGATCCCTAATTTGGGGGTGGGAAGGGGC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5787860 32 -  36342412 CTCAGCCTCTTCT----------GTTTGGAGGTAGGTGGGGC-
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90194864 25 + 124595110 ----------------GTCCATAGTCTGTGGGGAGAGAGGC--
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58218503 26 +  91889043 ---AAGTTCTGTC--------------TGGGCTGGGGAGGGAC
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  853502 43 +   1727078 GGGGGCTTCTgttcagttccctaatttggggtaaggagggggc
i dasNov3.JH579681               C 0 C 0
e rheMac8.chr7                    59998141  1 + 169600520 I

a score=170440.000000
s hg38.chr15_KI270850v1_alt          38797 39 +    430880 AGGCTGAGGCCC--ACAGGGCTTGTTTTGCGCGGGGATAGG
s panTro5.chr15                   59872249 39 +  83230942 AGGCTGAGGCCC--ACAGGGCTTGTTTTGCGCAGGGATACC
i panTro5.chr15                  C 0 T 41920
s panPan2.chr15                   23064908 39 -  99763055 aggctgaggccc--acagggcttgttttgcgcagggatacc
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            330128 39 -    378907 AGGCTGAAGCCC--ACAGGGCTTGTTTTGCGCGGGGATAGC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     12401 39 -     28805 aggctgaggccc--acagggcttgttttgcgcagggatacc
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61597330 39 + 171882078 AGGCTGAGGCCC--ACAGGGCTTGTTTTGCACATCAATAGC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3920869 39 +   4820037 AGGCTGAGGCCC--ACAGGACTTGTTTTGCACATCGATTGC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9783405 39 +  10730278 AGGCTGAGGCCC--ACAGGACTTGTTTTGCACATCGATCGC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1325429 39 +  24206276 AGGCTGAGGCCC--ACAGGGCTTGTTTTGCGCATCAATAGC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3924772 39 +   4030761 AGGCTGAGGCCC--ACAGGACTTGTTTTGCGCATCGATCGC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4030673 39 +   5013933 AGGCTGAGGCCC--ACAGGGCTTGTTTTGCGCATCGATACC
i colAng1.NW_012114844v1         C 0 C 0
s otoGar3.GL873530                 5787892 39 -  36342412 AGGCTGAGGCCA--CCAGGGCTGCTTGTGCCTCGGGATTAC
i otoGar3.GL873530               C 0 I 1
s mm10.chr9                       90194889 27 + 124595110 AGGATGACATTC--CTA---CCCATTTCACTC---------
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58218529 12 +  91889043 AGG------------CAGGGCTTA-----------------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  853545 41 +   1727078 tggctgaggcccagagagggcagatattgcctggggctacc
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            691903  0 +    730879 C
e calJac3.chr10                  113751921  0 - 132174527 C
e cebCap1.NW_016107334v1             98800  0 +  11725426 C
e rheMac8.chr7                    59998141  1 + 169600520 I
e saiBol1.JH378378                   90030  0 -    125141 C

a score=67520.000000
s hg38.chr15_KI270850v1_alt          38836 13 +    430880 CAGCGATTTG-GCT
s panTro5.chr15                   59830368 14 +  83230942 CAGCGATTTGTGCT
i panTro5.chr15                  T 41920 I 1500
s panPan2.chr15                   23064947 13 -  99763055 cagcgatttg-gct
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            330167 13 -    378907 CAGCGATTTG-GCT
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     12440 13 -     28805 cagcgatttg-gct
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61597369 13 + 171882078 CAGCGATTTG-GCT
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3920908 13 +   4820037 CAGCGATTTG-GCT
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9783444 13 +  10730278 CAGCGATTTG-GCT
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1325468 13 +  24206276 CAGCGATTTG-GCT
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3924811 13 +   4030761 CAGCGATTTG-GCT
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4030712 13 +   5013933 CAGCGATTTG-GCT
i colAng1.NW_012114844v1         C 0 C 0
s otoGar3.GL873530                 5787932 13 -  36342412 CAGCAGTTTG-GTG
i otoGar3.GL873530               I 1 C 0
s mm10.chr9                       90194916  3 + 124595110 -----ACT------
i mm10.chr9                      C 0 C 0
s dasNov3.JH579681                  853586 13 +   1727078 cagttgtttg-gct
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            691903  0 +    730879 C
e calJac3.chr10                  113751921  0 - 132174527 C
e canFam3.chr3                    58218541  0 +  91889043 C
e cebCap1.NW_016107334v1             98800  0 +  11725426 C
e rheMac8.chr7                    59998141  1 + 169600520 I
e saiBol1.JH378378                   90030  0 -    125141 C

a score=281689.000000
s hg38.chr15_KI270850v1_alt          38849 50 +    430880 GCTGGTACCAGGA-CCCAGCCTT-CCTTCCCTGGTGCCTCTGGGAAGCGACG
s panTro5.chr15                   23357186 50 -  83230942 GCTGGTACCAGGA-CCCAGCCTT-CCTTCCCTGGTGCCTCTGGGAAGCAACG
i panTro5.chr15                  I 26 C 0
s panPan2.chr15                   23064960 50 -  99763055 gctggtaccagga-cccagcctt-cctTCCCTGGTGCCTCTGGGAAGCAACG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            330180 50 -    378907 GCTGGTACCAGGA-CCCAGCCTT-CCTTCCCTGGTGCCTCTGGGAAGCGACG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     12453 51 -     28805 gctggtaccagga-cccagccttccCTTCCCTGGTGCCTCTGGGAAGTGACG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61597382 50 + 171882078 GCTTGTCCCAGGA-CCCAGCCTT-CCTTCCCTGGTGCCTCTGGGAAGCAACG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3920921 50 +   4820037 GCTTGTCCCAGGA-CCCAGCCTT-CCTTCCCTGGTGCCTCTGGGAAGTGACG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9783457 50 +  10730278 GCTTGTCCCAGGA-CCCAGCCTT-CCTTCCCTGGTGCCTCTGGGAAGCGACG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1325481 50 +  24206276 GCTTGTCCCAGGA-CCCAGCCTT-CCTTCCCTGGTGCCTCTGGGAAGCAACG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3924824 50 +   4030761 GCTTGTCCCAGGA-CCCAGCCTT-CCTTCCCTGGTGCCTCTGGGAAGTGACG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4030725 50 +   5013933 GCTGGTCCCAGGA-CCCAGCCTT-CCTTCCCTGGTGCCTCTGGGAAGCGACG
i colAng1.NW_012114844v1         C 0 C 0
s otoGar3.GL873530                 5787945 50 -  36342412 TCTGGGACTACAA-CCCAGACTT-CCTTGCCTACCCCATCTGGGGAGCAATG
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90194919 39 + 124595110 GCGTGGATTAGGG-CCCCGACTT-----CCCTGG------TGAGAAGCCAC-
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58218541 45 +  91889043 ------GCCAGGAGTCCAGTCAC-TCTCCCTAGGTGATTTTGGGGCGCAGTG
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  853599 33 +   1727078 gttgggtttagaa-cccagACAT------------------GGGCAGCAGTG
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            691903  0 +    730879 C
e calJac3.chr10                  113751921  0 - 132174527 C
e cebCap1.NW_016107334v1             98800  0 +  11725426 C
e rheMac8.chr7                    59998141  1 + 169600520 I
e saiBol1.JH378378                   90030  0 -    125141 C

a score=13794321.000000
s hg38.chr15_KI270850v1_alt          38899 1287 +    430880 AGGCTGGTCAGGATAGCTGGTCAGGGGTGCCCACAGGGTCTCCTCCCCCGAACCTCTGCACCAATGACACTGGCACACAGGCCCTTTGTCCCATGTGAGCAGGGACGGCTGGTTGCTGGG----GGGATTTGACTtttcattctcatggtcttcctgggaggtgggtggaggagcctattttgcaaataaggaaactgaggcccaga----agaggg--cccctgtcttgctgaggtcttgctagcctaggtggGTAGTTTCCTGGCTGTGGAGGCCTGGCGAGGAT-GGGCTCTGCCTGGCTTTCACGG-GTCTGTGCCCCG----CAGTGCTCCACCACCTGTGGCCTGGGTGCCCTCTGGAGGCCGGTGTGCTGTAGCTCCAGCCGGGATGAGGACTGCGACCCCGCTGGCCGGCCCCAGCCTGCCCGCCGCTGCCACCTGTGGCCCTGTGCCACCTGGCACTCAGGCAACTGGAGTAAG----GTGCA------------------TGAGGATGG--------------------------AGCCAGGACAGGCATCCCCAGGGCATGGGGTGGAGCCCT-GGTTCCCCACG-----------GC---CTGTGTTCCGAGAGCGGCAGGGAAGGGGAGGGCTCCAGGCTGCATGTCTATGTGCCTGATCGCAC-CGGATTCCGAATCTCTTGGGAGTCATC--TCATCTTTGTCTGGCTTGGCCTGTC-----TCCT-----TTCCTCTG-TA-TCT---TTGACC----CCATCTGGACTTGT------------------------TCCTCCCTT---TCTCTGTCTGTCCCA----------GCCCATGGCAGCCCCTGGCCATGCCACCTTT------TGCCTGGGGCCTGCCAGCCTTGGCCTCTCGCTGGGGCTCTTCAGGGATTTGCC----CCCGGCTGGGGCGT----GGGTCTGATGCCTTTCCTGCCACACGCCTCACGGGG-----TCACGCCTGT----------------------------GGGCCTGCACGTGGGGATGTGTCCACAC-AAGTCTCTCGGT----CCCCAGTGCTCCCACAGCTGTGGCAGAGGTTCCTCAGTGTGGGACATGCAGCATGTGGACACATGGGCCCTCTGGCCACTGTGGCCCTTCCATTGTCAGCCTGGACCTGCCAAGCTGCCTGTGCACTGGCCCTGCGGGGCCCAGCCCTGCCTCAGCTGGTACATGTCTTCCTGGAGGGAGGTGAGGCCTGGGCGTTG--AGT-TGGGGGGA--GGGGACACCCTCAGACCCTGGCTGTGCCCTGACTCC-TTCCCTGCCCA---------CCCAGTGCTCCGAGGCCTGTGGCGGTGGTGAGCAGCAGCGTCTGGTGACCTGCCCAGAGCCAGACCTCTGCGAGGAGGC-ACTGAGACCCAACACCACCCGGCCCTGCAACACCCACCCCTGCACACAGTGGGTGGTG
s panTro5.chr15                   23357236 1305 -  83230942 AGGCTGGTCAGGATAGCTGGTC-GGGGTGCCCACAGGGTCCCCTCCCCCCA-CCTCTGCACCAATGACACTGGAACACAGGCCCTTTGTCCCATGTGAGCAGGGACGGCTGGTTGCTGAG----GGGATTTGACTtttcattctcacggtcttcctgggaggtgggtggaggagcctattttgcaaataaggaaactgaggcccaga----agaggg--cccctgtcttgctgaggtctcgctagcctaggtggGTAGTTTCCTGGCTGTGGAGGCCTGGCAGGGAT-GGGATCTGCCTGGCTTTCACGG-GTCTCTGCCCCG----CAGTGCTCTACCACCTGTGGCCTGGGTGCGGTCTGGAGGCCGGTGCGCTGTAGCTCCGGCCGGGATGAGGACTGCGCCCCCGCTGGCCGGCCCCAGCCTGCCCGCCGCTGCCACCTGCGGCCCTGTGCCACCTGGCACTCAGGCAACTGGAGTAAG----GTGCG------------------TGAGGATGG--------------------------AGCCAGGACAGGCATTCCCAGGGCATGGGGTGGAGCCCT-GGTTCCCCACG-----------GC---CTGTGTTCTGAGAGCAGCAGGGAAGGGGAGGGCCCCAGGCTGCACATCTGTGTGCCCGATCGCAC-CGGATTCTGAATCTCTTGGGAGTCTTC--TCATCTTTGTCTGGCTTGGCCTGTC-----TCCT-----TTCCTCTG-TA-TCT---TTGACC----CCATCTGGACTTGTCTTTCACCAGCTTGCC---TTTGTTCCTCCCTT---TCTCTGTCTGTCCTA----------GCCCATGGCAGCCCCTGGCCATGCCACCTTT------TGCCTGGGGCCTGCCAGCCTTGGCCTCTCGCTGGGGTTCTTCAGATATTC-CC----CCGGGCTGGGGCAT----GGGCCTGATGCCTTTCCCGCCACACACCTCACGGGG-----TCACGCCTGT----------------------------GGGCCTGCACATGGGGATGTGTCCATAC-ACGTCTCTCGAT----CCCCAGTGCTCCCGCAGCTGCGGCGGAGGTTCCTCAGTGCGGGACGTGCAGTGTGTGGACACACGGGACCTCCGGCCACTGCGGCCCTTCCATTGTCAGCCCGGGCCTGCCAAGCCGCCTGCGCACCGGCCCTGCGGGGCCCAGCCCTGCCTCAGCTGGTACACGTCTTCCTGGAGGGAGGTGAGGCCTGGGCGTTG--AGT-TGGGGGGA--GGGGACGCCCTCAGACCCTGGCTGTGCCCTGACTCC-TTCCCTGCCCA---------CCCAGTGCTCCGAGGCCTGTGGCGGTGGTGAGCAGCAGCGTCTAGTCACCTGCCCGGAGCCAGGCCTCTGCGAGGAGGC-GCTGAGACCCAACAGCACCCGGCCCTGCAACACCCACCCATGCACGCAGTGGGTGGTG
i panTro5.chr15                  C 0 I 13939
s panPan2.chr15                   23065010 1305 -  99763055 AGGCTGGTCAGGATAGCTGGTC-GGGGTGCCCAGAGGGTCCCCTCCCCCCA-CCTCTGCACCAATGACACTGGAACACAGGCCCTTTGTCCCATGTGAGCAGGGACGGCTGGTTGCTGGG----GGGATTTGACTtttcattctcatggtcttcctgggaggtgggtggaggagcctattttgcaaataaggaaactgaggcccaga----agaggg--cccctgtcttgctgaggtcttgctagcctaggtggGTAGTTTCCTGGCTGTGGAGGCCTGGCGAGGAT-GGGATCTGCCTGGCTTTCACGG-GTCTCTGCCCCG----CAGTGCTCTACCACCTGTGGCCTGGGTGCGGTCTGGAGGCCGGTGCGCTGTAGCTCCGGCCGGGATGAGGACTGCGCCCCCGCTGGCCGGCCCCAGCCTGCCCGCCGCTGCCACCTGCGGCCCTGTGCCACCTGGCACTCAGGCAACTGGAGTAAG----GTGCG------------------TGAGGATGG--------------------------AGCCAGGACAGGCATTCCCAGGGCATGGGGTGGAGCCCT-GGTTCCCCACG-----------GC---CTGTGTTCTGAGAGCAGCAGGGAAGGGGAGGGCCCCAGGCTGCACATCTGTGTGCCCGATCGCAC-CGGATTCTGAATCTCTTGGGAGTCTTC--TCATCTTTGTCTGGCTTGGCCTGTC-----TCCT-----TTCCTCTG-TA-TCT---TTGACC----CCATCTGGACTTGTCTTTCACCAGCTTGCC---TTTGTTCCTCCCTT---TCTCTGTCTGTCCCA----------GCCCATGGCAGCCCCTGGCCATGCCACCTTT------TGCCTGGGGCCTGCCAGCCTTGGCCTCTCGCTGGGGTTCTTCAGATATTC-CC----CCGGGCTGGGGCAT----GGGCCTGATGCCTTTCCCGCCACACACCTCACGGGG-----TCACGCCTGT----------------------------GGGCCTGCACATGGGGATGTGTCCATAC-ACGTCTCTCGAT----CCCCAGTGCTCCCGCAGCTGCGGCGGAGGTTCCTCAGTGCGGGACGTGCAGTGTGTGGACACACGGGACCTCCGGCCACTGCGGCCCTTCCATTGTCAGCCCGGGCCTGCCAAGCCGCCTGCGCACCGGCCCTGCGGGGCCCAGCCCTGCCTCAGCTGGTACACGTCTTCCTGGAGGGAGGTGAGGCCTGGGCATTG--AGT-TGGGGGGA--GGGGACGCCCTCAGACCCTGGCTGTGCCCTGACTCC-TTCCCTGCCCA---------CCCAGTGCTCCGAGGCCTGTGGCGGTGGTGAGCAGCAGCGTCTAGTCACCTGCCCGGAGCCAGGCCTCTGTGAGGAGGC-GCTGAGACCCAACAGCACCCGGCCCTGCAACACCCACCCCTGCACGCAGTGGGTGGTG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            330230 1272 -    378907 AGGCTGGTCA-------------GGGGTGCCCACAGGGTCTCCTCCCCGAA-CCTCTGCACCAATGACACTGGAACACAGGCCCTTTGTCCCATGTGAGCAGGGACGGCTGGTTGCTGGG----GGGATTTGACTtttcattctcatggtcttcctgggaggtgggtggaggagcctattttgcaaataaggaaactgaggcccaga----agaggg--cccctgtcttgctgaggtcttgctagcctaggtggGTAGTTTCCTGGCTGTGGAGGCCTGGCGAGGAT-GGGATCTGCCTGGCTTTCACGG-GTCTGTGCCCCG----TAGTGCTCCACCACCTGTGGCCTGGGTGC-CTCTGGAGGCCGGTGCGCTGTAGCTCCAGCCGGGATGAGGACTGCGACCCCGCTGGCCGGCCCCAGCCTGCCCGCCGCTGCCACCTGTGGCCCTGTGCCACCTGGCACTCAGGCAACTGGAGTAAG----GTGCA------------------TGAGGATGG--------------------------AGCCAGGACAGGCATCCCCAGGGCATGGGGTGGAGCCCT-GGTTCCCCACG-----------GC---CTGTGTTCCGAGAGCGGCAGGGAAGGGGAGGGCTCCAGGCTGCATGTCTATGTGCCTGATCGCAC-CAGATTCCGAATCTCTTGGGAGTCATC--TCATCTTTGTCTGGCTTGGCCTGTC-----TCCT-----TTCCTCTG-TA-TCT---TTGACC----CCATCTGGACTTGT------------------------TCCTCCCTT---TCTCTGTCTGTCCCA----------GCCCATGGCAGCCCCTGGCCATGCCACCTTT------TGCCTGGGGCCTGCCAGCCTTGGCCTCTCGCTGGGGCTCTTCAGGGATTTGCC----CCCGGCTGGGGCGT----GGGTCTGATGCCTTTCCTGCCACACGCCTCACGGGG-----TCATGCCTGT----------------------------GGGCCTGCACGTGGGGATGTGTCCACAC-AAGTCTCTCGGT----CCCCAGTGCTCCCACAGCTGTGGCAGAGGTTCCTCAGTGTGGGACATGCAGCACGTGGACACATGGGACCTCCGGCCACTGTGGCCCTTCCATTGTCAGCCTGGACCTGCCAAGCTGCCTGTGCACTGGCCCTGCGGGGCCCAGCCCTGCCTCAGCTGGTACATGTCTTCCTGGAGGGAGGTGAGGCCTGGGCGTTG--AGT-TGGGGGGA--GGGGACACCCTCAGACCCTGGCTGTGCCCTGACTCC-TTCCCTGCCCA---------CCCAGTGCTCCGAGGCCTGTGGCGGTGGTGAGCAGCAGCGTCTGGTGACCTGCCCAGAGCCAGACCTCTGCGAGGAGGC-ACTGAGACCCAACACCACCCGGCCCTGCAACACCCACCCCTGCACACAGTGGGTGGTG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     12504 1303 -     28805 AGGCTGGTCAGGATAGCTGGTCAGGGGTGCTCACAGGGTCCCCTCCCCCCA-CCTCTGCACCGATGACACTGAAACACACGCCCTTTGTCCCATGTGAGCAGGAGCGGCTGGTTGCTGGG----GGGATTTGACTtttcatcctcacggtcttcctgggagg-gggtggaggagcctattttgcatataaggaaactgaggcccgga----agagg----ccctgtcttgctgaggtctcgctagcctaggtggGTAGTTTCCTGGCTGTGGAGGCCTGGCGGGGAT-GGGATCTGCCTGGCTTTCACGG-GTCTGTGTCCTG----CAGTGCTCCACCACCTGTGGCCTGGGTGCGGTCTGGAGGCCGGTGCGCTGTAGCTCCGGCCGGGATGAAGACTGCACCCCTGCTGGCCGGCCCCAGCCTGCCCGCCGCTGCCACCTGAGGCCCTGTGCCACCTGGCACTCAGGCAACTGGAGTAAG----GTGCG------------------TGAGGATGG--------------------------AGCCAGGACAGGCATCCCCAGGGCATGGGGT-GAGCCCT-GGTTCCCCACG-----------GC---CTGTGTTCCGAGAGCAGCAGGGAAGGGGAGGGCTCCAGGCTGCATGTGTGTGTGCCTGATCGCAC-CGGATTCCGAATCTCTTGGGAGTCTTC--TCATCTTTGTCTGGCTTGGCCTGTC-----TCCT-----TTCCTCTG-TA-TCT---TTGACC----CCATCTGGACTTGTCTTTCACCAGCTTGCC---TTTGTTCCTCCCTT---TCTCTGTCTGTCCCA----------GCCCATGGCAAACCCTGGCCATGCCACCTTT------TGCCCGGGGCCTGCCAGCCTTGGCCTCTCTCTGGGGCTCTTCAGGGATTTGCC----CCCGGCTGGGGCAT----GGGCTTGATGCCTTTCCCGCCACATGCCTCACGGGG-----TCACGCCTGT----------------------------GGGCCTGCACGTGGGGATGTGTCCACAC-ACGTCTCTTGGT----CCCCAGTGCTCCCGCAGCTGCGGTGGAGGTTCTTCAGTGCGGGATGTGCAGTGTGTGGACACACGGGACCTCCGGCCACTGCGGCCCTTCCATTGTCAGCCCGGGCCTGCCAAGCCACCTGCGCACCGGCCCTGCGGGGCCCAGCCCTGCCTCAGCTGGTACACATCTTCCTGGAGGGAGGTGAGGCCTGGGGGTTC--AGA-TGGGGGGA--GGGGACGCCCTCAGACCCTGGCTGTGCCCTGACTCC-TTCCCTGCCCA---------CCCAGTGCTCCGAGGCCTGTGGCGGTGGTGAGCAGCAGCGTCTGGTGACCTGCCCGGAGCCAGGCCTCTGCGAGGAGGC-ACTGAGACCCAACACCACCCGGCCCTGCAACACCCACCCCTGCACGCAGTGGGTGGTG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61597432 1305 + 171882078 AGACTGGTCAGGACAGCTGGTCAGGGGTGCCCTCAGGGCCCCCTCCCCC-A-CCTCTGCACCAATGACACTGGAACACAGGCCCTTTGTCCCATGTGAGCAGGGACAGTTGGTTGCTGGG----GGAATTTGACTtttcattctcatggtcttcctgggagatgggtggaggagcctattttgcaaataaggaaactgcggcccaga----agagtg---ccctgtcttactgaggtctcacTAGCCTAGATGGGTAGTTTCCTGACTGTGGAGGCCTGGCGGGGAT-GGGATCTGCCTGGCTTTCACGG-GTCTGTGACCCG----CAGTGCTCCACCACCTGTGGCCTGGGTGCCGTCTGGAGGTCGGTGCGCTGTAGCTCTGGCCCGAATGAGGACTGTGCCCCCGCTGGCCAGCCCCAGCCTGCCTGTCACTGCCACCTGCGGCCCTGTGCCACCTGGCACTCAGGCAACTGGAGTAAG----GTGCA------------------TGAGGATGG--------------------------AGCCAGGACAGGCATTCCCAGGGCATGGCATGGAGCCCT-GGTTCCCCACG-----------GC---CTGTGTTCCAAAAGCAGCAGGACAGGGGAGGGCTCCAGGCTGCACGTCTGTGCACCAGATTGCAC-CGGATTCCGAATCTCTTGGGAATCTTC--TCATCTGTGTCTGGCTTGGCCTGTC-----TCCT-----TTCCTCTG-TA-TTT---TTGACC----CCATCTGGACTTGTCTTTCACCAGCTTGCC---TTTGTTCCTCCCTT---TCTCTGTCTGTCCCA----------GCCCCTGGCAGCCCCTGGCCATGCCACCTTT------TGCCTGGGTCCTGCCAGCCTTGGCCTCTTGCTGGGGCTTTTCAGGGACTTGCC----CAGGGCTGGGGCGT----GGGCCTGATGTCTTTCCTGCCACATGCCTCATGGGG-----TCACGCCTGT----------------------------GGGCCTACACCTGGGGATGTGTCCCCAC-ACGTCTCTCGGT----CCCCAGTGCTCCCACAGCTGCGGCAGAGGTTCCTCAGTGCGGGACGTGCAGTGTGTGGACACACGGGACCTCCAGCTGCTGCGGCCCTTCCATTGTCAGCCCGGGCCTGCCAAGCCACCTGCGCACAGGCCCTGCGGGGCCCAGCCCTGCCTCAGCTGGTACACCTCTTCCTGGAGGGAGGTGAGGCCTGGGGGTTC--AGT-TGGGGGGA--GGGGATGCCCTCAGACCCTGGCTGT-CCCTGACTCC-TTCCCTGCCCA---------CCCAGTGCCCTGAGGCCTGTGGCGGTGGTGAGCAGCAGCGTCTGGTGACCTGCCCGGAGCCAGGCCTCTGCAAGGAGGCAACTGAGACCCAATACCACAGGGCCCTGAAATACCCAACCCTGCACGCAGTCGGTGGTG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3920971 1296 +   4820037 AGGCTGGTCAGGACAGCTGGTCAGGGGTGCCCACAGGGTCCCCTCCCCC-A-CCTCTGCACCAATGACACTGGAACACAGGCCCTTTGTCCCATGTGAGCAGGGACGGTTGGTTGCTGGG----GGGATTTGACTtttcattctcacggtcttcctgggaggtgggtggaggagcctatcttgcaaataaggaaactgaggcccaga----agaggg--cccctgtcttgctgaggtctcactaggctagGTGGGTAGTTTCCTGGCTGTAGAGGCCTGGCGGGGAT-GGGATCTGCCTGGCTTTCACGG-GTCTGTGCCCCG----CAGTGCTCCACCACCTGTGGCCTGGGTGCTGTCTGGAGGTCGGTGCGCTGTAGCTCTGGCCGGGATGAGGACTGCGCCCCCGCTGGCCGGCCCCAGCCTGCCCGCCGCTGCCACCTGCGGCCCTGTGCCACCTGGCACTCAGGCAACTGGAGTAAG----GTGCG------------------TGAGGATGG--------------------------AGCTAGGACAGGCATTCCCAGGGCATGGGTTGGAGCCCT-GGTTCCCCGCG-----------GC---CTGTGTTCCAAAAGCAGCAGGAC--GGGAGGGCTCCAGGCTGCACGTCTGTGTGCCCGATCACAC-CGGATTCTGAATCTCTTGGGA----------GTCTGTGTCTGGCTTGGCCTGTT-----TCCT-----TTCCTCTG-TA-TTT---TTGACC----CCATCTGGACTTGTCTTTTACCAGCTTGCC---TTTGTTCCTCCCTT---TCTCTGTCTGTCCCC----------GCCCCTGGCAGCCCCTGGCCATGCCACCTTT------TGCCTGGGGCGGGCCAGCCTTGGCCTCTCGCTGGGGCTTTTCAGGGATTTGCC----CCGGGCTGGGGCGT----GGGCCTGATGCCTTTCCCGCCACACGCCTCACGGGG-----TCACACCTGT----------------------------GGGCCTGCACCTGGGGATGTGTCCCCAC-ACGTCTCTCGGT----CCCCAGTGCTCTCGCAGCTGCGGCGGAGGTTCCTCAGTGCGGGATGTGCAGTGTGTGGACACACGGGACCTCCGGCTGCTGCGGCCCTTCCACTGTCAGCCCGGGCCTGCCAAGCCACCTGCGCACAGGCCCTGCGGGGCCCAGCCCTGCCTCAGCTGGTACACCTCTTCCTGGAGGGAGGTGAGGCCTGGGGGTTC--AGT-TGGGGGGA--GGGGACGCCCTCAGATGCTGGCTGTGCCCTGACTGC-TTCCCTGCCCA---------CCCAGTGCTCCGAGGCCTGTGGCGGTGGTGAGCAGCAGCGTCTGGTGACCTGTCCAGAGCCAGGCCTCTGCGAGGAGGC-GCTGAGACCCAACACCACACGGCCCTGCAACACCCACCCCTGCACACAGTGGGTGGTG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9783507 1298 +  10730278 AGGCTGGTCAGGACAGCTGGTCAGGGGTGCCCACGGGGTCCCCTCCCCC-A-CCTCTGCACCAATGACACTGGAACACAGGCCCTTTGTCCCATGTGAGCAGGGACGGTTGGTTGCTGGG----GGGATTTGACTtttcattctcacggtcttcctgggaggtgggtggaggagcctattttgcaaataaggaaactgaggcccaga----agaggg--cccctgtcttgctgaggtctcgctaggctaggtggGTAGTTTCCTGGCTGTAGAGGCCTGGCGGGGAT-GGGATCTGCCTGGCTTTCACGG-GTCTGTGCCCCG----CAGTGCTCCACCACCTGTGGCCTGGGTGCCGTCTGGAGGTCGGTGCGCTGTAGCTCTGGCCGGGATGAGGACTGCGCTCCCGCTGGCCGGCCCCAGCCTGCCCGCCGCTGCCACCTGCGGCCCTGTGCCACCTGGCACTCAGGCAACTGGAGTAAG----GTGCG------------------TGAGGATGG--------------------------AGCTAGGACAGGCATTCCCAGGGCATGGGTTGGAGCCCT-GGTTCCCCGCG-----------GC---CTGTGTTCCAAAAGCAACAGGACAGGAGAGGGCTCCAGGCTGCACGTCTGTGTGCCCGATCACAC-CGGATTCCGAATCTCTTGGGA----------GTCTGTGTCTGGCTTGGCCTGTT-----TCCT-----TTCCTCTG-TA-TTT---TTGACC----CCATCTGGACTTGTATTTTACCAGCTTGCC---TTTGTTCCTCCCTT---TCTCTGTCTGTCCCA----------GCCCCTGGCAGCCCCTGGCCATGCCACCTTT------TGCCTGGGGCAGGCCAGCCTTGGCCTCTCGCTGGGGCTCTTCAGGGATTTGCC----CCGGGCTGGGGCGT----GGGCCTGATGCCTTTCCCGCCACACGCCTCACGGGG-----TCACACCTGT----------------------------GGGCCTGCACCTGGGGATGTGTCCCCAC-ACGTCTCTCGGT----CCCCAGTGCTCCCGCAGCTGCGGCGGAGGTTCCTCAGTGCGGGATGTGCAGTGTGTGGACACACGGGACCTCCGGCTGCTGCGGCCCTTCCACTGTCAGCCCGGGCCTGCCAAGCCACCTGCGCACAGGCCCTGCGGGGCCCAGCCCTGCCTCAGCTGGTACACCTCTTCCTGGAGGGAGGTGAGGCCTGGGGGTTC--AGT-TGGGGGGA--GGGGACGCCCTCAGATGCTGGCTGTGCCCTGACTGC-TTCCCTGCCCA---------CCCAGTGCTCCGAGGCCTGTGGCGGTGGTGAGCAGCAGCGTCTGGTGACCTGTCCAGAGCCAGGCCTCTGCGAGGAGGC-GCTGAGACCCAACACCACACGGCCCTGCAACACTCACCCCTGCACACAGTGGGTGGTG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1325531 1304 +  24206276 AGGCTGGTCAGGACAGCTGGTCAGGGGTGCCCTCAGGGCCCCCTCCCCC-A-CCTCTGCACCAATGACACTGGAACACAGGCCCTTTGTCCCATGTGAGCAGGGACAGTTGGTTGCTGGG----GGAATTTGACTtttcattctcatggtcttcctgggagatgggtggaggagcctattttgcaaataaggaaactgcggcccaga----agagtg---ccctgtcttactgaggtctcactagcctaggtggATAGTTTCCTGACTGTGGAGGCCTAGCGGGGAT-GGGATCTGCCTGGCTTTCATGG-ATCTCTGCGCTG----CAGTG-TCCACCACCTGCGGCCTGGGTGCCATCTGGAGGCTGGTGCGCTGTAGCTCTGGCCCGAATGAGGACTGTGCCCCCGCTGGCCAGCCCCAGCCTGCCTGTCACTGCCACCTGCAGCCCTGTGCCACCTGGCACTCAGGCAACTGGAGTAAG----GTGCA------------------TAAGGATGG--------------------------AGCCAGGACAGGCATTCCCAGGGCATGGCGTGGAGCCCT-GGTTCCCCACG-----------GC---CTGTGTTCCAAAAGCAGCAGGACAGGGGAGGGCTCCAGGCTGCACGTCTGTGCACCAGATTGCAC-CGGATTCCGAATCTCTTGGGAATCTTC--TCATCTGTGTCTGGCTTGGCCTGTC-----TCCT-----TTCCTCTG-TA-TTT---TTGACC----CCATCTGGACTTATCTTTCACCAGCTTGCC---TTTGTTCCTCCCTT---TCTCTGTCTGTCCCA----------GCCCCTGGCAGCCCCTGGCCACGCCACCTTT------TGCCTGGGTCCTGCCAGCCTTGGCCTCTTGCTGGGGCTTTTCAGGGACTTGCC----CAGGGCTGGGGCGT----GGGCCTGATGTCTTTCCTGCCACATGCCTCATGGGG-----TCACGCCTGT----------------------------GGGCCTACACCTGGGGACGTGTCCCCAC-ACGTCTCTCGGT----CCCCAGTGCTCCCGCAGCTGCGGCGGAGGTTCCTCAGTGCGGGATGTACAGTGTGTGGACACACGGGACCTCCAGCTGCTGCGGCCCTTCCATTGTCAGCCCGGGCCTGCCAAGCCACCTGCGCACAGGCCCTGCGGGGCCCAGCCCTGCCTCAGCTGGTACACCTCTTCCTGGAGGGAGGTGAGGCCTGGGGGTTC--AGT-TGGGGGGA--GGGGATGCCCTCAGACCCTGGCTGT-CCCTGACTCC-TTCCCTGCCCA---------CCCAGTGCCCTGAGGCCTGTGGTGGTGGTGAGCAGCAGCATCTGGTGACCTGCCTGGAGCCAGGCCTCTGCAATGAGGCAACTGAGACCCAATACCACAGGGCCCCGAAATACCCAACCCTGCACGCAGTGGGTGGTG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3924874 1292 +   4030761 AGGCTGGTCAGGACAGCTGGTCAGGGGTGCCCTCAGGGCCCCCTCCCCC-A-CCTCTGCACCAATGACACTGGAACACAGGCCCTTTGTCCCATGTGAGCAGGGACGGTTGGTTGCTGGG----GGGATTTGACTtttcattctcatggtcttcctgggaggtgggtggaggagcctattttgcaaataaggaaactgaggcccaga----agaggg--cccctgtcttgctgaggtctcgctaggctaggtggGTAGTTTCCTGGCTGTAGAGGCCTGGCGGGGAT-GGGATCTGCCTGGCTTTCACGG-GTCTGTGCCCCG----CAGTGCTCCACCACTTGTGGCCTGGGTGCCGTCTGGAGGTCGGTGCGCTGTAGCTCTGGCCGGGATGAGGACTGCGCCCCCGCTGGCCGGCCCCAGCCTGCCTGTCGCTGCCACCTGCGGCCCTGTGCCACCTGGCACTCAGGCAACTGGAGTAAG----GTGCG------------------TGAGGATGG--------------------------AGCTAGGACAGGCATTCCCAGGGCATGGGTTGGAGCCCT-GGTTCCCCGTG-----------GC---CTGTGTTCCAAAAGCAGCAGGACAGGGGAGGGCTCCAGGCTGCACGTCTGTGTGCCCGATCACAC-CGGATTCCGAATCTCTTGGGA----------GTCTGTGTCTGGTTTGGCCTGTT-----TCCT-----TTCCTCTG-TA-TTT---TTGACC----CCAGCTGGACTTGTCTTTTACCAGCTTGCC---TTTGTTCCTCCCTT---TCTCTGTCTGTCCCA----------GCCCCTGGCAGCCTCTGGCCATGCCACCTTT------TGCCTGGGGCGGGCCAGCCTTGGCCTCTCGCTGGGGCTCTTCAGGGATTTGCC----CCGGGCTGGGGCGT----GGGCCTGATGCCTTTCCCGCCACATGCCTC-----------TCACACCTGT----------------------------GGGCCTGCACCTGGGGATGTGTCCCCAC-ACGTCTCTCGGT----CCCCAGTGCTCCCGCAGCTGCGGCGGAGGTTCCTCAGTGCGGGATGTGCAGTGTGTGGACACACGGGACCTCCGGCTGCTGCGGCCCTTCCACTGTCAGCCCGGGCCTGCCAAGCCACCTGCGCACAGGCCCTGCGGGGCCCAGCCCTGCCTCAGCTGGTACACCTCTTCCTGGAGGGAGGTGAGGCCTGGGGGTTC--AGT-TGGGGGGA--GGGGACGCCCTCAGATGCTGGCTGTGCCCTGACTGC-TTCCCTGCCCA---------CCCAGTGCTCCGAGGCCTGTGGCGGTGGTGAGCAGCAGCGTCTGGTGACCTGTCCAGAGCCAGGCCTCTGCGAGGAGGC-GCTGAGACCCAACACCACACGGCCCTGCAACACTCACCCCTGCACACAGTGGGTGGTG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4030775 1305 +   5013933 AGGCTGGTCAGGACAGCTGGTCAGGGGTGCCCACAGGGTCCCCTCCCCC-A-CCTCTGCACCAATGACACTGGAACACAGGCCCTTTGTCCCATGTGAGTGGGGACGGTTGGTTGCTGGG----GGGATTTGACTtttcattctcacggtcttcctgggagatgggtggaggagcctattttgcaaataaggaaactgaggcccaga----agaggg--cccctgtcttgctgaggtctcactaggctaggtaggtagTTTCCTGGCTGTAGAGGCCTGGCGGGGAT-GGGATCTGCCTGGCTTTCACCG-GTCTGTGCCCTG----CAGTGCTCCACCACCTGTGGCCTGGGTGCCGTCTGGAGGCCGGTGCGCTGTAGCTCTGGCCGGGATGAGGACTGCGCCCCTGCTGGCCGGCCCCAGCCTGCTCGCCGCTGCCACCTGCGGCCCTGTGCCACCTGGCACTCAGGCAACTGGAGTAAG----GTGCG------------------TGAGGATGG--------------------------AGCCAGGACAGGCATTCCCAGGGCATGGGTTGGAGCCCT-GGTTCCCCACG-----------GC---CTGTGTTCCAAAAGCAGCAGGACAGGGGAGGGCTCCAGGCTGCACGTCTCTGCCCCCGATCACAC-CGGATTCCGAATCTCTTGGGAGTCTTC--TCATCTTTGTCTGGCTTGGCCTGTC-----TCCT-----TTCCTCTG-TA-TTT---TCGACC----CCATCTGGACTTGTCTTTCACCAGCTTGCC---TTTGTTCCTCCCCT---TCTTTGTCTGTCCCA----------GCCCCTGTCAGCCCCTGGCCATGCCACCTTT------TGCCTGGGTCCTGCCAGCCTT-GCCTCTCTCTGGGGCTTTTCAGGGACTTGCC----CGGGGCTGGGGCCT----GGGCCTGATGCCTTTCCTGCCACACGCCTCATGGGG-----TCGCGCCTGT----------------------------GGGCCTGCACATGGCAATGTGTTCCCAC-ACGTCTCTCGGT----CCCCAGTGCTCCCGCAGCTGCGGCGGAGGTTCCTCAGTGCGGGACGTGCAGTGTGTGGACACACGGGACCTGCGGCTGCTGCGGCCCTTCCATTGTCAGCCCGGGCCTGCCAAGCCACCTGCGCACAGGCCCTGCGGGGCCCAGCCCTGCCTCAGCTGGTACACCTCTTCCTGGAGGGAGGTGAGGCCTGGGGTTTC--AGT-TGGGGGGA--GGGGACGCCCTCAGATGCTGGCTGTGCCCTGACTCC-TTCCCTGCCCA---------CCCAGTGCTCCGAGGCCTGTGGAGGTGGTGAGCAGCAGCGTCTGGTGACCTGTCCAGAGCCAGGCCTCTGCGAGGAGGC-GCTGAGACCCAACACCACACGGCCCTGCAATACCCACCCCTGCACACAGTGGGTGGTG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113751921 1295 - 132174527 AGGCTGGTCAGGATAGCTGGTCAGGGGTGCCCGCAGGGTCCCCTTCCCGTG-CCTCTGCACCAGTGACACTGGAACACAGGCCCTTTGTCCTTTGTGGGCAGGGGTAGTTGGTTGCTGGGGTAGGGGGGTTGATTttttattctcatggtcttcctgggaggtgggtggaggagtctattttgcaaataagagaactgaggcccaga----agaggg---gcctgtcttgctgaggtttcgctagcctaggtgggtag-ttcctggctgtgggggcct-----------gggtctgcctggctttcatgg-gtccgtgcctca----cagtgctccacCACCTGTGGCCTGGGCGCCATCTGGAGGCCAGTGCGCTGTAGCTCCGGCCGGGATGAGGACTGCGCCCCTGCTGGCCGGCCCCAGCCTGCCCGCCGCTGCCACCTGAGGCCCTGTGCCACCTGGCACTCGGGCAACTGGAGTAAG----GTGCG------------------TGAGGACGG--------------------------AGCCAGGGCAGGGAGCCCCAGGGCACAGGGTGGAGCCCT-GGGTCCCCACA-----------GC---CTGTGTTCCGAGAGCAGCAGGGCAGGGGAGGGCTCTGGGCTGCATGTCTTGGCACCCGATCAAAC-TGGA-TCTGAATCTCCTGGGAGTCTTC----ATTTTTGTCTCACTTGGCCTGTC-----TCCT-----CCCCTCTG-TA-TTT---CTGACC----CCATCTGGACTTGTCTTTCACAAGCTTGCC---TTTGTTCCTCCCTT---TCTCCGTCTGTCCCC----------GCCCATGGCAGCCCCTGGCCGGG-CATCTTT------TGCCTGGGGCCTGCCAGCCTTGGCCTCTCACTGGGGCTCTTCAGGGATTTGCC----CCTGGCTGGAGTGGCTGAAGGCCTGATACCTTCTTTGGCACACACCTCACGGGG-----TCACACGTGT----------------------------GGGCCTGCA--TGAGAG-ACGTCCACAC-ACGTCTCTCCGT----CCCCAGTGCTCCCGCAGCTGTGGTGGAGGCTCCTCCGTGCGGGATGTGCAGTGTGTGGACACACGGGACCTCCGGCCGCTGCGACCCTTCCATTGTCAGCCGGGGCCAGCCAAGCCGCCCGCACACCGGCCCTGCGGGGCCCAGCCCTGCCTCAGCTGGTACACCTCTTCCTGGAGGGAGGTGAGGCCTGGGGGTCC--ATT-TGCGGGGA--GGGGGCGCCCTCAGACCCTGGCTGTGCCCTGACTCC-TTCCTTGCTC----------CCCAGTGCTCTGAGGCCTGTGGCGGGGGTGAACAGCAGCGGCTGGTGACCTGCCCGGAGCCAGGCCTCTGCGAGGAAGC-TCTGAGACCCAACACCACGAGGCCCTGCAATACCCACCCCTGCACGCAGTGGGTGGTG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   90030 1312 -    125141 AGGCTGGTCAGGATAGCTGGTCAGGGGTGCCCGCAGGGTCCCCTTCCCCTG-CCTCTGTACCAGTGACGCTGCAACACAGGCCCTTTGTCCTTTGTGGGCAGGGTCAGTTGGTTGTTGGGGT--GGGGGTTGACTttttattctgacggtcttcctgggaggtgggtggaggagtctattttgcaaataagaaaac--aggcccaga----agaggg---gactgtcctgctgaggtctcgctagcctaggtggGTAG-TTCCTGGCTGTGGGGGCCTGGCGGGGAT-GGGGTCTGCCTGGCTTTCACGG-GTCTGTGCCCCG----CAGTGCTCCACCACCTGTGGCCTGGGCGCCGTCTGGAGGCTGGTTCGCTGCAGCTCCGGCCGGGATGAGGACTGTGCCCCTGCTGGCCGGCCCCAGCCTGCCCGCCGCTGCCACCTGCGGCCCTGTGCCACCTGGCACTCGGGCAACTGGAGTAAG----GTGCG------------------TGAGGTTGG--------------------------AGCCAGGGCAGGGAGCCCCAGGGCATGGGGCAGAGCCCT-GGGTCCCCACG-----------GC---CTGTGTTCCGAGAGCAGCAGGGCAGGGGAGGGCTCTGGGCTGCACGTCTGGGTACCCGATGGCAC-TGGA-TCTGAATCTCCTGGGAGTCTTC----ATTTTTGTCTGGCTTGGCCTGCC-----TCCT-----CCCCTCTG-TA-TTT---CTGACC----CCATCTGCACTTGTCTTTCACCAGCTTGCCTTTTTTATTTCTCCCTT---TCTCCGTCTGTCCCTGCCCATGGCAGCCCATGGCAGCCCCTGGCTGGG-CACCTTT------GGCCTGGGGCTTGCCAGCCTTGGCCTCTCGCTGGAGCTCTTCAGGGATCTGCC----CCGGGCTGGAGCGT----GGGCCTGATGCCTTCCCTGACACATGCCTCTCGGGA-----TTGCACGTGT----------------------------GGGCCTGCACGTGGGGG-GTGTCCACAC-GTGTCTCTCTGT----CCCCAGTGCTCCCGCAGCTGCGGTGGAGGCTCCTCAGTGCGGGACGTGCAGTGTGTGGACACACGGGACCTCCGGCCGCTGCGACCCTTCCATTGTCAGCCGGGGCCAGCCAAGCCACCTGCGCACCGGCCCTGTGGGGCCCAGCCCTGCCTCAGCTGGTACACCTCTTCCTGGAGGGAGGTGAGGCCTGGGGGTCC--AGT-TGGGGGGA--GGGGGTGCCCTCAGACCCTGGCTGTGCCCTGACTCC-TTCCCTGCAC----------CCCAGTGCTCTGAGGCCTGTGGCGGTGGTGAACAGCAGCGTCTGGTGACCTGCCCGGAGCCAGGCCTCTGCGAGGAGGC-ACTGAGACCCAACGCCACGCGGCCCTGTAACACTCACCCCTGCACGAAGTGGGTGGTG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1             98800 1304 +  11725426 AGGCTGGTCAGAATAGCTGGTCAGGGGTGCCCGCAGGGTCCCCTTCCCCCG-CCTCTGCACCAGTGACACTGCAACACAGTCCCTTTGTCCTTTGTGGGCAGGGTCAGTTGGTTGCTGGGGGGTGGGGGTTGACTttttattctcacgatcttcctgcgaggtgggtggaggagtctattttgcaaataagaaaactgaggcccaga----agaggg---gcctgtcttgctgaggtctcgctagcctaggtggGTAG-TTCCTGGCTGTGGGGGCCTGGCGGGGAT-GGGGTCTGCCTGGCTTTCACGG-GTCCCTGCCCCG----CAGTGCTCCACCACCTGCGGCCTGGGTGCCGTCTGGAGGCCGGTGCGCTGTAGCTCCGGCCGGGATGAGGACTGCGCCCCTGCTGGCCGGCCCCAGCCTGCCCGCCGCTGCCACCTGCGGCCCTGTGCCACCTGGCACTCGGGCAACTGGAGTAAG----GTGCG------------------TGAGGATGG--------------------------AGCCAGGGCAGGGAGCCCCAGGGCACGGGGCGGAGCCCT-GGGTCCCCACG-----------GG---CTGTGTTCCGAGAGCAGCAGGGCAGGGGAGGGCTCTGGGCTGCACGTCTGGGCACCTGATGGCACTTGGA-TCTGAATCTCCTGGGAGTCTTC----ATTTTTGCCTGGCTTGGCCTGTC-----TCCT-----CCCCTCTG-TA-TTT---CTGACC----CCATCTGGACTTGTCTTTCACCAGCTTGCC---TTTGTTCCTCTCTT---TCTCCGTCTGTCCCC----------GCCTATGGCAGCCCCTGGCCGGG-CACCTTT------TGCCTGGGGCCTGCCAGCCTTGGCCTCTCACTGGGGGTCTTCAGGGATTTGCC----CCGGGCTGGAGCGT----GGGCCTGATGCCTTCCCTGCCACACGCCTCACGGGG-----TCGCACATGT----------------------------GGGCCTGCACGTGGGGG-GTGTCCACAC-GCGTCTCTCCGT----CCCCAGTGCTCTCGCAGCTGCGGTGGAGGCTCCTCAGTGCGGGATGTGCAGTGTGTGGACACACGGGACCTCCGGCCGCTGCGACCTTTCCATTGTCAGCCGGGGCCAGCCAAGCCGCCTGCGCACCGGCCCTGCGGGGCCCAGCCCTGCCTCAGCTGGTACACCTCTTCCTGGAGGGAGGTGAGGCCTGGGGGTCC--AGT-TGGGGGGA--GGGGGCGCCCTCAGACCCTGGCTGTGCCCTGACTGC-TTCCCTGCAC----------CCCAGTGCTCTGAGGCCTGTGGCGGTGGTGAACAGCAGCGTCTGGTGACCTGTCCGGAGCCAGGCCTCTGCAAGGAAGC-GCTGAGACCCAACGCCACGAGGCCCTGTAACACTCACCCCTGCACGCAGTGGGTGGTG
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            691903 1279 +    730879 AGGCTGGTCAGGATAGCTGGTCA--GGTGCCCGCAGGGTCCCCTCCCCCTG-TCTCTGCACCAGTGACACTGGAACACAGGCCCTTTGTCCTTTGTGGGCAGGATCAGTTGGTTGCTGGGGG-TGGGGGTTGACCttttattctcatggtcttcctgggaggtgggtggaggagtctattttgcaaataagaaaacggaggcccaga----agaggg---ccctgtcttgttgaggtctaggtagcctaggtgggtag-ttcctggctgtgggggcctggcggggat-ggggtctgcctggctttcacgg-gtctgtgccctg----cagtgctccaccacCTGTGGCCTGGGCGCTGTCTGGAGGCCAGTGCGCTGTAGCTCCGGCCGGGATGAGGACTGCGCCCCTGCTGGCCGGCCCCAGCCTGCCCGCCGCTGCCACCTGCGGCCCTGTGCCACCTGGCACTCGGGCAACTGGAGTAAG----GTGCG------------------TGAGGATGG--------------------------AGCCAGGGCAGGGAGCCCCGGGGCACGGGGCGGAACCCT-GGGTCCCCACG-----------GC---CTGTGTTCCGAGAGCAGCGGGGCAGGGGAGGGC--------------------ACCCGATTGCAC-TGGA-TCCGAATCTCCTGGGAGTCTTC----ATTTTTGTCTGGCCTGGCCTGTC-----TCCT------CCCTCTG-TA-TTT---CTGACC----CCACCTGGACTTGTCTTTCACTGGCTTGCC---TTTGCTTCTCCCTT---TCTCCGTCTGTCCTT----------GCCCATGGCCGCCCCTGGCCGGG-CGCCTTT------TGCCTGGGGCCTGCCAGCCTTGGCCTCTTGCTGGGGCTCTTCAGGGATTTGCC----CTGGGCTGGAGCGT----GGGCCTGATGCCTTCCCTGCCACACGCCTCACGGGG-----TCACACGTGT----------------------------GGGCCTGCACGTGGTGG-GTGTCCACAC-GCGTCTCTCCGT----CCCCAGTGCTCCCGCAGCTGCGGTGGAGGCTCTTCAGTGCGGGACGTGCAGTGTGTGGACACACGGGACCTCCGGCCGCTGCGGCCCTTCCATTGTCAgccggggccggccaagccgcccgcgcaccggccctgcggggcccagccctgccTCAGCTGGTACACCTCTTCCTGGAGGGAGGTGAGGCCTGGGGGTCC--AGT-TGGGGGGA--GGGGGTGCCCTCAGACCCTGGCTGTGCCCTGACTCC-TTCCCTGCCC----------CTCAGTGCTCTGAGGCCTGTGGTGGTGGTGAACAGCAGCGCCTGGTGACCTGCCCGGAGCCAGGCCTCTGCGAGGAGGC-GCTGAGACCCAACGCCACGCGGCCCTGCAATACCCAACCCTGCACGCAGTGGGTGGTG
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5787995 1184 -  36342412 -------CCAGGACAGCTGGTG--------CTGCAGGGTCCCTTCACCCCA-------------------------------CCTGTGTTCCTTGTAAGCAGGGACACTTAGTTGCTGGG----AGGATTTTACTTTTTATTCTCAGTGTCTT--TGGGAGGTGGGTGGAAGAGcccatttcacagataagg-aattgaggccctga----aaAAGG--GCCCTGGCTTGG-------------------------------CTGGTGGGGAAGGCCTGGAGGGCAC-G---------CGGCCCTCACAGCCTCTGTGCCCTG----CAGTGCTCCACCACCTGTGGCCTGGGTGCTGCCTGGAGGCCTGTGCGCTGTAGCTCAGGCCGGGATGAGGACTGCACTCCCGCTGGCCGGCCCCAGCCTGCCCGCCGTTGCCACCTGCGGCCCTGTGCCGCCTGGCACCCAGGCAACTGGAGTAAGGTGTGTGCG------------------TGAGGATGG--------------------------AGCCTGG-TGGGCAGCCCT-GGGCA---GGTGGAGCCCT-ATGTCCTTGTG-----------AC---CTGTGTTGCC-------CATGGCAGGGGATGACTT---------------TGCACTAGATTGTAT-TTGATTCCTAATCTCTTGGGAATCTTT--TCATCT-------GTTTGGCCTGGT-----GTCT-----TT-CTCTG-CATTTT---TTTGCC----TGCTCTAGACCTCTTTTTCACCAGCTGTCC---TTTGCTTTTCTTTT---CCT---TTTGTACCA----------TCC----------------------------------TGCCTG----CTGCCTGAACTGGTCTCT-GCCTAGGCTCTTTAGGGGTTTGCCTGTGTGGGGGAGGGGGGT----TGGCCATGTGTGTGT---GGCACGTA---CACGGGGTGTGTTCACACGTGTCCCTTGGTCTGTAAGAGCTGACCATGTGTGGCATGCACACGG-AATGTGTCTACAT-GTGTCCCTTGGT----CTGCAGTGCTCCCGCAGCTGTGGTGGAGGCTCCTCAGTGCGGGATGTGCAGTGTGTGGACACACAGGACCTCCGGCCACTGCGGCCCTTCCACTGTCAGCCAGGGCCTGCCAAGCCACCTGCCCGCCGGCGCTGTGGGGCCCAGCCCTGCCTCAGCTGGTACATCTCTTCCTGGAGGGAGGTGAGGCCTGGGGGTCC--AGGATAGGGCTA--GGGGATGCCCTCAGAC-TTGGCTGCTCCCTGACCCT-TTCCCTGTCCA---------CCCAGTGCTCGGAGGCCTGTGGCGGCGGTGAGCAGCAGCGTCTGGTGACCTGCCCAGAGCCAGGCCTCTGTGAGGAGGC-ACTGAGGCCCCACAGCACGCAGCCCTGCAACACCCACCCCTGCACACAGTGGGTGGTA
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90194958 1104 + 124595110 AGGATGG-CAGGGTAGGTAGGTGG--------------------------G-CC--------------------AAGCGGGCCCT--------TGGGAGCAGAGATAGTTAACTGCTGGT----GACATTTGACTTTTTTCTTTCACAGTCTTCTCGGGAGGTGGGGGGAGGAGTCTGTCTTGCAGATAAAGATGCTGG----------------------------------------------------------------CGGGTTTGAGGTGCTGGTGGGTGG-GTGGGCTGCTGGGCTTACA-GT-ATCTATGGTCCA----CAGTGTTCCACCACCTGTGGCCTGGGCGCCATCTGGAGGCTAGTGAGCTGCAGCTCTGGCAATGACGAGGACTGCACCCTCGCTAGCCGTCCCCAGCCTGCCCGCCATTGTCATCTGAGGCCCTGTGCTGCCTGGCGCACGGGCAACTGGAGTAAG----GTAAG------------------CAGG---------------------------------------------------------------GAGCCCT-GGATCC-TGTG-----------GC---TGTGATTTGAAGACCAGCAGGGCA-GGGTGAATATCATGCCACA-GTCTGTACTCTGATCCGGTC-CTGTTCTCATCCCTCTTGGAGATCTTCATTCAGCATGGCCTGGCCCTGCTTGCG-----TTGCTGTACTTCCTCTG-TG-TTCGAACCACCC----ACCATTGGACTCTTCTT--ACCAGCTCACC-----------CTAGTA---ATTCCATCTGTTTTG----------TCC----------CCTGGGTTTGCCACCTGG------TG-----------------TTGAAGTCT-ACTGGGACTCTTTGG--------T----CTAGGCCAGA--------AGGTTTAAC-CCTGCTGTATGATAAACATCATG--------TTGCATTCAT----------------------------GTGCATAGA---------ATGTCTCTAT-GTGACTATTCTTTGCACTCCAGTGCTCTCGAAACTGTGGTGGAGGTTCCTCTACAAGGGATGTACAGTGTGTGGATACACGGGACCTCCGGCCACTGCGGCCCTTTCACTGCCAGCCCGGGCCTACCAAGCCACCCAACCGTCAGCTCTGTGGGACCCAGCCCTGCCTCCCCTGGTACACCTCCTCCTGGAGAGAGGTGAGGTTTGGGCCTGG--GGA-AGTGGGGACTGAGGACACCCTTGGACCCCGGCTAT-ACTTGA-TGC-CTCTTTGTTCT---------TCCAGTGTTCCGAGGCTTGTGGTGGTGGTGAACAGCAGCGACTGGTGACATGTCCAGAGCCAGGGCTCTGTGAGGAGTC-GCTGAGACCCAACAACAGCAGGCCCTGCAACACCCACCCCTGCACACAGTGGGTGGTA
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58218586 1123 +  91889043 AGCCCGGTCATGATGGTT-----------------GGGTCACC-------A-CCTC------------------------------TGTCCCCCGTGAGCCAGGACAT----------GA----GGTGTTTGAGGTTTTGTGTT-----------TGGGAGGTGGGTGGAGGGGCCCATTGCACAGATGGGTAAGGTGAGGTTCTGGCTCCAGCGGGTGCCCCCGCATTGCTGGCGGC------------------------CCGGCCGTGGGGCTGGGGGGGCGCG-GGGATCTGCCC-GCCCTCACGG--CCTGTGCCCGGCCCCCAGTGCTCCACCACCTGCGGCCTGGGTGCTGTCTGGAGGCCCGTCCGCTGCAGCTCCGGCCGCGAAGAGGACTGTGCCCCCGCCGGCCGCCCCCAGCCTGCCCGCCGCTGCCACCTGAGGCCGTGTGCCGCCTGGCACGCGGGCAACTGGAGCAAG----GTGCG------------------TGAG----------------------------------------------CCTCGGGGTGCAAGCTGGGCTGCC-CAGTGCCCACT-----------GCACGCTGGGT--------------------GGCGGACTCTGCGCTGC-----------------CATCC-TGGGCT-----TGTCCTG----TCCAC--ACACCTGT-CCCGGGTTGGCCTGC-------CCT-----GCCCCTAG-CA-CCT---CTG--------CTGCTGGCCATGCC---------CTTTCT---CTTGTACCTGCCATGCCCCTCGGGATGGCATT----------GTCACTGACTGTTCC-AGTGGGGCCACCCTGGCTACATGCCTGAAGCTGGCTGGTCT-------------------------------CC----CCGGGGTGGGTTGGG---GGGTCCGATGCCCACACCGCCACC--CCTCGCAGGG-----CCGTGTGCGA----------------------------GCAGGTGCAC---GGGGTCTGCTCACACTGCGCTCCTTGCC----CTGCAGTGCTCGCGTGGCTGCGGGGGAGGCTCCTCAGTGCGTGACGTGCAGTGTGTGGACACACAAGACCTCCGGCCACTGCGGCCCTTCCACTGCCAGCCAGGGCCCCCCATGCCGCCCACCCGCCGTCCCTGTGGGGTGCAGCCCTGCCTCAGCTGGTACATCTCTTCCTGGAGGGAGGTGAGGCCTGGGGGCCCCGGGA-CAAGGTGG--GGGGGTGTCCTCAGACCCCGGCAGTACCCCGACCCCTTTCTCTGCCCATCCCGCTCTTCCAGTGCTCCGAGGCTTGTGGTGGTGGCCAGCAGGAACGTCTGGTGACCTGCCCAGAGCCAGGCCTCTGCGAAGAGGC-GTTGAGACCCAACAGCACGCGGCCCTGCAACACGCACCCCTGCACGCAATGGGTCGTG
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  853632 1225 +   1727078 AGCCTTGCCGGGACTGCTGGGT-GGGATGCCTGTAGGCTGGCCTCACCCCA-CCC--------------------------------------TGGGAGCAGGGAAACTTGGTTGCTGG-----GGGATTTGGCTtttcatcctcacagtctccctgggaggtaggtagaggagtctattttgcagacaaggcaaccaaggccgaaa----gagtgg---ccctggcttg--------------gcccaggt--------------cTGGGGGGACCCGGAGGGAGCAGGGATCTGCCTGGCCCTGATGG-GACTCCGCCCCCCATCCAGTGCTCCACCACCTGTGGTCTGGGTGCCATCTGGAGGCCCGTGCGCTGCAGCTCCGGCCGTGATGAGGACTGTGCTCCTGCTGGCCGGCCCCAGCCTGCCCGCCACTGCCACCTGCGGCCCTGTGCCTCCTGGCACACTGGCAACTGGAGCAAG----GTGTGGGGTGCAACCAACTTGGTGGGGGGTGGGGGCGTTGGCCTGCGGGAGCGAGGACAGCCAAGGCAGGAGACCTCGGGATACGGGGTGGGGTGCTAAGGGCCCCACGTTCCCGGGCCAGC---CTCTGCCACCAGTG----AGGGCAGAGGAGGGCTCTCTGCAATGCCTTTGTGCACTTGATCGTTT---------GAACCCTTT---AACCTTC------GTTTCTTTGGCTTGACCTGCCCCTAGTCCC-----TTCTCCTGCTA-GCT---TTTCCCTATGCCCTCTGGATTCCATTCTCCCTGACTT-CC---TTTGCCCC---------TTTCTGCCTGTCGCG----------TCCGGTGGCAGACCCTGGCAGGGTTGCCCTG------CTGCTGGGG--TGGCTGCCCCAGCCTCTCCCTGGGGTTCCTCAGGGATGTGGC----CAGGGCTAGGGCTG---------------------------------------------T-----GCGT----------------------------GTGCACACACATG--------------C-ACGTCCCTGGGT----CCCCAGTGCTCCCGCAGCTGCGGCGGGGGCTCCTCGGTGCGAGACGTGCAGTGTATGGACATGCGGGACCTGCGGCCGCTGAGGCCCTTCCACTGCCAGCCTGGGCCTGCCAAGCCGCCCGCCCGCCGGCCCTGCGGAGCCCAGTCCTGCCTCAGCTGGTACATCTCTTCCTGGAGGGAGGTAAGGTCTGGGGGTCC--GGG-ATGGGG----TGGGGCACCTGCTGACCCTGGCCGTGCCCTGACCGC-TTCTTGACCCCT--------CCCAGTGCTCTGAGGCCTGCGGTGGAGGCGAACAGCAGCGTCTGGTGACCTGCCCGGAGCCGGGCCTCTGCGAGGAGGC-GCTGAGGCCCAATGCTACGCAGCCCTGCAACACCCATCCCTGCACACAGTGGGTGGTA
i dasNov3.JH579681               C 0 C 0
e rheMac8.chr7                    59998141    1 + 169600520 I

a score=2465097.000000
s hg38.chr15_KI270850v1_alt          40186 288 +    430880 GGGCCCTGGGGCCAGGTGAGCCAGGCT--GC----GGGGGGGAGCAGGGAGCAA---GTGCTTGGTAGCGCCTGGTC--AGTCCTGGG-T----TGGGTGAAGGA-GCtgtgg---agtgtgtgctgtg-agccaggctgtctgtggcccctgcacatgc-agca-gtcactggacaaagccct--g-cc-atgctgg-tgctcaca-cctga-cagggagaaaca--gac-aaggaaAGGGC-ATGTGTGctgtgatgtcagggaaggccttccgagga-g-gg-gtctggggttgaga-cccgagggaggagtcagtgatgcca
s panTro5.chr15                   59831882 291 +  83230942 GGGCCT--GCGCCAAGTGAGCCGGGCTGGGC----GGGGAGGAGCAGGGAGCAA---GTGCTTGTGGTCGGCTGGTCCAGGTCCTGG--------TGGTGAAGGAGGCTGT-G---AGTGTGTGCTGTGAAGCCAGGCTCTCTGTGGCGCCTGCACATGC-AGCATGTGACTGGACATAGCCCTGGG-CC-ATGCTGGCTGCTCACA-CCTGGCCAAGGAAAAAC---GAC--AGGAAAGGGC-ACATGTGTTATGATGTCAGGGAAGGCCTTCTGA-GA-G-GG-GCCTGGGGTTGACATTCCGAGAGAGGAATCAGTGATGCCA
i panTro5.chr15                  I 1500 I 58
s panPan2.chr15                   23066315 288 -  99763055 GGGCCCTGGGGCCAGGTGAGCCGGGCT--GC----GGGGAGGAGCAGGGAGCAA---GTGCTTGGTGGCGCCTGGTC--AGTCTTGGG-T----TGGGTGAAGGA-GCtgtgg---agtgtgtgctgtg-agccaggctctctgtggcccctgcacatgc-agca-gtcactggacgaagccct--g-cc-atgctgg-cgctcaca-cctgc-cagggagaaaca--gac-aaggaaAGGGC-ACGTGTGctgtgatgtcagggaaggccttccgagga-g-gg-gtctggggttgaga-cctgagggaggagtcagtgatgcca
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            331502 276 -    378907 GGGCCCTGGGGCCAGGTGAGCCAGGCT--GC----GGGG-GGAGCAGGGAGCAA---GTGCTTGGTAGCGCCTGGTC--AGTCCTGGG-T----TGGGTGAAGGA-GCtgtgg---agtgtgtgctgtg-agccaggctgtctgtggcccctgcacatgc-agca-gtcactggacgaagccct--g-cc-atgctgg-tgctcaca-cctgc-cagggagaaaca--gac-aaggaaA-----------Gctgtgatgtcagggaagg-cttccgagga-g-gg-gtctggggttgaga-cccgagggaggagtcagtgatgcca
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     13807 260 -     28805 GGGCCCTGGGGCCAGGTGAGCCGGGCT--GC----GGGGAGGAGCAGGGAG-----------------CGCCTGGTC--AGTCCTGGG-T----TGGGTGAAGGA-GCTGTGG---AGTGTGTGCTGTG-AGCCAGGCTCTTTGTGGCCCT---------------GTCACTGGACGAGGCCCT--G-CC-CTGCTGG-TGCTCACA-CCTGC-CAGGGAGAAACA--GAC-AAGGAAAGGGC-G-GTGTGctgtgatgtcagggaaggccttccgagga-g-gg-gtctggggttgaga-cctgagggaggagtcagtgatgcca
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61598737 287 + 171882078 GGGCCCTGGGGCCGGGTGAGCCGGGCT--GC----GTGGAGGGATGGGGAGCAA---GTGCGTGGTGGCACCTGGTC--GGTCCTGGG-T----TGGGTGAAGGa-tcttttg---agtgtgtgctgtg-agccaggctctctgtggcccctgcgcatgc-agca-gtgactggacgaggcccc--g-cc--cactgg-tgctcaca-cctgc-cagggagaaaca--gac-aaGGAAAGGGC-ACTTGTGCTGTGATGTCAGGGAAGGCCTTACAAGGA-G-GG-GTCTGGGGTTGAGA-CCCGAGGGAGGAGTCAGTGATGCCA
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3922267 287 +   4820037 GGGCCCTGGGGCCAGGTGAGCTGGGCT--GA----GTGGAGGAGCAGGGAGCAA---GTGCGTGATGGCACCTGGTC--GGTCCTGGG-T----TGGGTGaagga-tcttttg---agtgtgtgctgtg-agccaggctctctgtggcccctgcgcatgc-agca-gtgactggacgaggcccc--g-cc--cactgg-tgctcaca-cctgc-cagggagaaaca--gac-aaggaaAGGGC-ATGTGTGCTGTGATGTCAGGGAAGGCCTTCCAAGGA-G-GG-GTCTGGGGTTGAGA-CCCGAGGGAGGAGTCAGTGATGCCA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9784805 287 +  10730278 GGGCCCTGGGGCCAGGTGAGCCGGGCT--GA----GTGGAGGAGCAGGGAGCAA---GTGCGTGGTGGCACCTGGTC--GGTCCTGGG-T----TGGGTGaagga-tcttttg---agtgtgtgctgtg-agccaggctctctgtggcccctgcgcatgc-agca-gtgactggacgaggcccc--g-cc--cactgg-tgctcaca-cctgc-cagggagaaaca--gac-aaggaaagggc-acgtgtgctgtgatgtcagggaaggccttccaagga-g-gg-gtctggggttgaga-cccgagggaggagtcagtgatgcca
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1326835 287 +  24206276 GGGCCCTGGGGCCGGGTGAGCCGGGCT--GC----GTGGAGGGGTGGGGAGCAA---GTGCGTGGTGGCACCTGGTC--GGTCCTGGG-T----TGGGTGAAGGa-tcttttg---agtgtgtgctgtg-agccaggctctctgtggcccctgcgcatgc-agca-gtgactggacaaggcccc--g-cc--cactgg-tgctcaca-cctgc-cagggagaaaca--gac-aaGGAAAGGGC-ACGTGTGTTGTGATGTCAGGGAAGGCCTTACAAGGA-G-GG-GTCTGGGGTTGAGA-CCCGAGGGAGGAGTCAGTGATGCCA
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3926166 288 +   4030761 GGGCCCTGGGGCCAGGTGAGCCGGGCT--GA----GTGGAGGAGCAGGGAGCAA---GTGCGTGGTGGCACCTGGTC--GGTCCTGGG-T----TGGGTGaagga-tcttttg---agtgtgtgctgtg-agccaggctctctgtggcccctgcgcatgc-agca-gtgactggacgaggcccc--g-cc--cactgg-tgctcaca-cctgc-cagggagaaaca--gac-aaggaaAGGGC-ATGTGTGctgtgatgtcagggaaggccttccaaggagg-gg-gtctgcggttgaga-cccgagggaggggtcagtgatgcca
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4032080 288 +   5013933 GGGCCCTGGGGCCAGGTGAGCCGGGCT--GC----GTGGAGGAGCAGGGAGCAA---GTTTGTGATGGCGCCTGGTC--AGTCCTGGG-T----TGGGTGaagga-tcttttg---agtgtgtgctgtg-agccaggctctctgtggcccctgcgcatgc-agca-gtgattggacgaggccct--gccc--cgctga-tgctcacg-cctgc-cagggagaaaca--gac-aaggaaagggc-acttgtgctgtgatgtcagggaaggccttccaagga-a-gg-gtctggggttgaga-cccgagggaggagtcagtgatgcca
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113753216 286 - 132174527 GGGCCCTGGGGCCAGGTGAGCTGAGCT--GC----ATGGAGGAGCAGGGAGCAA---GGGCTTGGTGGCACCTGGTC--GATCGTGGG-T----TGGGTGaagca-gctattg---agtatg-gctgag-agccaggc--tctctggccactgctcatgc-agca-gtgactggatgaggtcac--g-cc-ctgctgg-tgctcacagcctgc-cagggagaaaca--gac-aaggaaAGGGC-ACGTGTGCTGTGATATCAGGGAAGGCCTTCCCAGGA-G-GG-GCCTAGGGTTGAGA-CCCGAGGGAGGAGTCAGTGATGCCA
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   91342 288 -    125141 GGGCCCTGGGGCCAGGTGAGCTGGGCT--GC----GTGGAGGAGCAGGGAGCAA---GGGCTTGGTGGTACCTGGTC--GGTCCTGGG-T----TGGGTGaagca-gctattg---agtgcg-gctgag-agccaggctgtctctggccactgctcgtgc-agca-gtgactggacgaggtccc--g-cc-ctgctgg-tgctcacagcccgc-cagggagaaaca--gac-aaggaaagagc-acatGTGCCGCGATGTTAGGGAAGGCCCTCCCAGGA-G-GG-GCCTGGAGTTGAGA-CCCGAGGGAGGAGTCAGTGATGCCA
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1            100104 288 +  11725426 GGGCCCTGGGGCCAGGTGAGCTGGGCT--GC----GTGGAGGAGCAGGGGGCAA---GGGCTTGGCGGCACCTGGTC--GGTCCTGGG-T----TGGGTGaagca-gctattg---agtgta-gctgag-agccaggctgtctctggccactgctcatgc-agca-gtgactggatgaggtcct--g-cc-ctgctgg-tgctcacagcctgc-cagggagaaaca--gac-aaggaaAGGGC-ATGTGTGctgtgatgtcagggaaggccttcccagga-g-gg-gcctggagttgaga-cccaacggaggagtcagtgacgcca
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            693182 287 +    730879 GGGCCCTGGGGCCAGGTGAGCTGGGCT--GC----GTGGAGGAGCAGGGAGCAA---GGACTTGGCGGCACCTGGTC--GGTCCTGGG-T----TGGGTGaagca-gctgttg---agtgtg-gctgag-agccgggctctctctggccactgctcgt-c-agca-gtgactggacgaggtcct--g-cc-ctgctgg-tgctcacagcctgc-cagggagaaaca--gac-aaggaaAGGGC-ACGTGTGCCGTGATgtcagggaaggccttcccagga-g-gg-gcctggggttgaga-cccgagggaggagtcagtgatgcca
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5789179 275 -  36342412 GGGCCCTGGGGCCAGGTGAGTTGGG----GG----TTGCAGGAGAAGTG--------GTGCC------CATCTGGGC--CTTAGTGca-t----tgaagaagggt-tctttggcacagtgtgcact----a-----gctccctgtggccgctccagatac-agtg-gtgaccagatgaggtccc--a-cc-ctgctgg-tgctcacggcctac-caggaagaaacatggat-aaagagaaattgacatgtgatgtgatgtcagggagggaccaaggagga-g-ggcacttggggttgagg-cctgaaggagggctCAGTGATGCCA
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90196062 265 + 124595110 GGGCCCTGGGGTCAGGTGAGCAGGGTT--GCTTGTGGGGAGGAATTGGCAGCAACCCTTGGCAGATAGACCCTGGTC-----CTTGGGCT----TAGAAGGATGA-GTTGTTG-----TGTGTGATGTG-TGCTGG--TCTCTGGGGCCACTAAATATTC-AGTT-GTGCCCTGATCAAGTCCT--T----------G-TAC------TTTGC-CAGGGAATATCA--GAT-AGAGGAAAAGT-G-----GCCATG----cggggaaagtcctctgagga-gagg-actttgggttgaca-tctaa---aggcgtcagtgatgcta
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58219709 250 +  91889043 GGGCCCTGGGGCCAGGTGAGCAAGCCT--GC---------GGACCAGGGAC------GGGCCCAGCGGCCACTGGGA--AGTCCTCCG-TTCCCTCGAGAAGGCA-TCATCTG------GTGTGCTATG-TGCCAGGCTCTCT--GGTCACTGCAGATGTGGGTG-GTGGCCAGACAAGGTCCC--C-ACACTGCCGA-AGCCTTGG-CCTGC-TGGGGAGAGGGG--GTTGAAAGGGAGTGG-GTGGGTGCTGGGATGTCAGG-----------------G-AG-GCCTG----------C-------AGGACTCGGTGGTTCGA
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  854857 237 +   1727078 GGACCCTGGAGCCAGGTGAGCAGGG----GC----TGGGA-----TGGGGGCAT---GTGCTCAGGGGCACCTGAGA--GCTCATTTG-C----CCGTTGAACCT-TGAATTC---TCTGTGtactggg-caccaggctctct--ggctgctgcaggtac-agt--gtgaacagacga--------g-gt-------g-agctc----cctgc-c-------------tgc-------------acgTGTGGTCCGACGTCAGGCAGGGTCTTCTGAGGA-G-GG-GGCTG---CTGAGA-GCTG-GGGAGGGGTCAGCGCTGCAA
i dasNov3.JH579681               C 0 C 0
e rheMac8.chr7                    59998141   1 + 169600520 I

a score=208643.000000
s hg38.chr15_KI270850v1_alt          40474 22 +    430880 aggacagggatcgaggggacag
s panPan2.chr15                   23066603 22 -  99763055 aggacagggatcgaagggacat
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            331778 22 -    378907 aggacagggatcgaggggagag
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     14067 22 -     28805 aggacagggatcgaggggacag
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61599024 22 + 171882078 AGGACAAGGATCAAGGGGATAG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3922554 22 +   4820037 AGGACAGGGATCAAGGGGATAG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9785092 22 +  10730278 aggacagggatcaaggggatag
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1327122 22 +  24206276 AGGACAGGGATCAAGGGGATAG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3926454 22 +   4030761 aggacagggatcaaggggatag
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4032368 22 +   5013933 aggacagggatcaaggggacag
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113753502 22 - 132174527 AGAACAGGGATAAAAGGGACAG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   91630 22 -    125141 AGGACAGGGATAAAAGGGACAG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1            100392 22 +  11725426 aggacagggataaaagggacag
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            693469 22 +    730879 gggacagggataaaagggacag
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5789454 22 -  36342412 AGAATAGGGACAGATGGGACAA
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90196327 22 + 124595110 aagtgagggataaagagaacag
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58219959 22 +  91889043 AGTAGAGGTCcaaggggaacag
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  855094 20 +   1727078 AGGAGAGGGAT--AGGGAGCAG
i dasNov3.JH579681               C 0 C 0
e rheMac8.chr7                    59998141  1 + 169600520 I
e panTro5.chr15                   59832173 58 +  83230942 I

a score=384208.000000
s hg38.chr15_KI270850v1_alt          40496 37 +    430880 caggtgtgaagt-ctgaggcaggaatgatgagcttggg
s panPan2.chr15                   23066625 37 -  99763055 caggtgtgaagt-ctgaggcaggaatgacgagcttgag
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            331800 37 -    378907 caggtgtgaagt-ctgaggcaggaatgatgagcttggg
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     14089 37 -     28805 caggtgtgaagt-ctgaggcaggaatgatgagcttagg
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59998142 37 + 169600520 CAGGTGTGAAGT-TTGAGGCAGGAATGATGAGCTTGGG
i rheMac8.chr7                   I 1 C 0
s macFas5.chr7                    61599046 37 + 171882078 CAGGTGTGAAGT-CTGAGGTGGGAATGACGAGCTTGGA
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3922576 37 +   4820037 CAGGTGTGAAGT-CTGAGGCAGGAATGACGAGCTTGGG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9785114 37 +  10730278 caggtgtgaagt-ctgaggcaggaatgatgagcttggg
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1327144 37 +  24206276 CAGGTATGAAGT-CTGAGGTGGGAATGACGAGCTTGGG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3926476 37 +   4030761 caggtgtgaagt-ctgaggcaggaatgacgagcttggg
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4032390 37 +   5013933 caggtgtgaagt-ctgaggcaggaatgatgagcttggg
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113753524 37 - 132174527 TAGGTGTGAAGT-CTGAGGCAGGAATGACAGGCTTGGG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   91652 37 -    125141 TAGGTGTGAAGT-CTGAGGCAGGAATGATGAGCTTGGG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1            100414 37 +  11725426 caggtgtgaagt-ctgaggcaggaatgacgagcttggg
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            693491 37 +    730879 caggtgtgaagt-ctgaggcaggaatgacgagcttggg
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5789476 31 -  36342412 CAGGGGCCAAATCCTGAGGCAGGAATGGTGA-------
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90196349 31 + 124595110 caagtgccgagc-ctgaggcaggaatgacggg------
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58219981 37 +  91889043 catgtgcaaagtcctggggcagaaaggaaagatctga-
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  855114 29 +   1727078 CAAGGGCACAGTCCCCAGGCA-CAATGATG--------
i dasNov3.JH579681               C 0 C 0
e panTro5.chr15                   59832173 58 +  83230942 I

a score=1051599.000000
s hg38.chr15_KI270850v1_alt          40533 110 +    430880 gagatcagggag-cccagcaaaggcc--a--gcg--GCAGAAGGGGGCAGAA----GAGGGG---------CCTC--------------------GTATGG-GCAGGACACCTT----------------------------CTGCTGGGCCTGTTTGGAACTGAGGGGTTCAGAAATC
s panTro5.chr15                   59832231 107 +  83230942 GAATTCAGGGAGCCCCAGCAAAGGCC-AA--GCG--GCAGAAGGGGCGTTAA----GAGGGG---------CCTC--------------------GT---G-GCAGGATACCTT----------------------------CTGCT-GGCCTGTTTGGAA-TGAGGGGTTcaggaatc
i panTro5.chr15                  I 58 n 58
s panPan2.chr15                   23066662 110 -  99763055 ggggccagggag-cccggcaaaggcc--a--gcg--gcagaagggggcgtaa----gagggg---------CCTT--------------------GGATGG-GCAGGACACCTT----------------------------CTGCTGGGCCTGTTTGGAACTGAGGGGTTCAGAAATC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            331837 109 -    378907 gagatcagggag-cccagcaaaggcc--a--gcg--GCAGAAGGGGGCAGAA----GCGGGG----------CTC--------------------GGATGG-GCAGGACACCTT----------------------------CTGCTGGGCCTGTTTGGAACTGAGGGGTTCAGAAATC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     14126 110 -     28805 gggaccagggag-cccagcaaaggcc--a--gCA--GCAGAAGGGGGCGGAA----GAGGGG---------CCTC--------------------GGATGG-GCAGGACACCTT----------------------------CTGCTGGGCCTATTTGGAACTCAGGGGTTCAGAAATC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59998179 110 + 169600520 GGGATAAGGGAG-CCCAGCAAAGGCC--A--GTG--GCAGAAGCGGGTGGAG----GAAGGG---------CCTC--------------------AGATGG-GCAGGACAGCTT----------------------------CTGCTGGGCCTGTTTGGAACTCAGGGGTTCAGAAATC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61599083 110 + 171882078 GTTATAAGGGAG-CCCAGCAAAGGCC--A--GTG--GCAGAAGGGGGTGGAA----GAGGGG---------CCTC--------------------AGATGG-GCAAGACACCTT----------------------------CTGCCAGGCCTGTTTGGAACTCAGGTGTTCAGGCGTC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3922613 110 +   4820037 GGTATCAGGGAG-CCCAGCAAAGGCC--A--GCG--GCAGAAGGGGGCGGGA----GAGGGC---------CCTC--------------------AGATGG-GCAGGACACCTT----------------------------CTGCCAGGCCTGTTTGGAACTCAGGGGTTCAGGCGTC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9785151 110 +  10730278 ggtatcagggag-cccagcaaaggcc--a--gcg--GCAGAAGGGGGCGGAA----GAGGGC---------CCTC--------------------AGATGG-GCAGGACACCTT----------------------------CTGCCGGGCCTGTTTGGAACTCAGGGGTTCAGGCGTC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1327181 110 +  24206276 GTTATAAGGGAG-CCCAGCAAAGGCC--A--GCG--GCAGAAGGGGGTGGAA----GAGGGG---------CCTC--------------------AGATGG-GCAGGACACCTT----------------------------CTGCCAGGCCTGTTTGGAACTCAGGTGTTCAGGCATC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3926513 110 +   4030761 ggtatcagggag-cccagcaaaggcc--a--gcg--GCAGAAGGGGGCGGAA----GAGGGC---------CCTC--------------------AGATGG-GCAGGACACCTT----------------------------CTGCCGGGCCTGTTTGGAACTCAGGGGTTCAGGTGTC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4032427 108 +   5013933 ggtatcagggag-cccagcaaaggcc--a--gcg--GCAGAAGGGGGCAGAA----GAGGGG---------CCTC--------------------AGATGG-GCAGGACACCTT----------------------------CTGCTGGGCCTGTTTGGAACTT--GGGTTCAGGTGTC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113753561 110 - 132174527 GCGATCAGGGAG-CCTGGCAAAGGCC--A--GCG--GCAGAAGGGGGCGGAA----GAGGAG---------CCTT--------------------GGGTGG-GCAGGATACCTT----------------------------CTGCCGGGTCTGTTTGGAACCAAGGGGGTCAGAAATC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   91689 110 -    125141 GCAATCAGGGAG-CCTGGCAAAGGCC--A--GCG--GCAGAAGGGGGCGGAA----GAGGAG---------ACTC--------------------GGGTGG-GCAGGACACCTT----------------------------CTCCCAGGTCTGTTTGGAATGAAGGAGTTCAGAAATC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1            100451 110 +  11725426 gggatcagggag-cctggcaaaggcc--a--gcg--gcagaagggggcagaa----gaggag---------CCTC--------------------GGGTGG-GCAGGACACCTT----------------------------CTGCCGGGTCTGTTTAGAACGAAGGGGTTCAGAAATC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            693528 110 +    730879 gtgatcagggag-cctggcaaaggcc--a--gtg--gcagaagggggcggaa----gaggag---------CCTC--------------------GGGTGG-GCAGGACACCTT----------------------------CTGCCGGGTCTGTTTGGAACCAAGGGGTTCAGAAATC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5789507  72 -  36342412 -------------------------------------------GGGGC---A----GAGCGG---------CTTC--------------------AGGTGG-GCAGGACACCTTC---------------------------CTGTTGGGCCTGTTTGTTGCTGAGAggttcaggaatc
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90196380 129 + 124595110 gtgttcagggaa-tggagcaaagacc--gctctg--gcagaagggagt---A----GAGAGG---------CCCCAcagggcagggcagggca-gggcagg-gcagggcagCTTG---------------------------CTgctgagcctactgggtgctgactggttcaagaagc
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58220018 119 +  91889043 gggtttagggaa-cagagcagaggcttga--gtg--acagaa-agggtggag----gagggggcagcgAGCCCTC--------------------AGGGGGCGCAAGATGCCTTC---------------------------CTGCCA--CCTGCT-ggagctacaaggtccaggaatc
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  855143 146 +   1727078 ----------------AACGAAGGCC--T--GTGAAGCACAAGTGGGGAGGGATCTGTGAGG---------CCTC---GGGTGTGGGTGGCCGCGGGGTGG-GCAGGATGCCTTCCTGCCAGGCCTGTGCCCCTCATGGCCACTCCCAGGCCTGCTCGGGGCCCAGAAGTTCAAGGGTC
i dasNov3.JH579681               C 0 C 0

a score=3571237.000000
s hg38.chr15_KI270850v1_alt          40643 423 +    430880 TCAGATTTGGGCCCTgagctgggtccgggagtcagctgggccagcgtttgagtct--gtccgactggct-gctgagtgactctgggcaggttgctttgctt------------------tgctgggtca--g-ttttc----tcatctgtaaaattgggacgctttgggagagga-------gggtcaggaggattaaatggaggaacgcaacaa-------agcacagggccgggcaca---------------gcacg--acac----tggcacagactcagcacATGTTTAGGGCTTTC------AGACCTGCACC-----TGTTAACAA--C-AAAGCCT------GGCGGGCTGGGCCCCGGCTGTGAAA-TTGTCTCCACCCCTCCTGCCCATG--GGCTGC-------GGCAGGTCCTCT-GCCCTGTCCCTCGGGCACAGCGGTGTCTC-GCCCACGTCTCTGCTCACTGCTGCATCAGGGCTCCATCCCGGGGCCCCTGCCCAGGCCTC-
s panPan2.chr15                   23066772 412 -  99763055 TCAGATTTGGGCCCTgagctgggtcctggagtcagctgggccagcgtttgcatctttgtccgactggct-gctgagtgactctgggcaggttgctttgcgt------------------tgctgggtcactg-ttttc----tcatctgtaaaactggaacagcttaggagagga-------gggtcaggaggattaaatgaaggaacgcaacga-------aacacagggccgggcaca---------------gcatg--acac----tggcacagactcagcgcATGTTTAGGGCT--------------------------GATAACAA--C-GAAGCCT------GGCGGGCTGGGCCCCGGCTGTGAAA-CTGTCTCCTGCCCTCCTGCCCATG--GGCTGC-------GGCAGGTCCTCT-GCCCTGTCCCTCGGGCACAGCGGTGTCTC-GCCCACGTCTCTGCCCACTGCTGCATCAGGGCCCCATCCCGGGGCCCCTGCCCAGGCTTC-
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            331946 425 -    378907 TCAGATTTGGGCCCTgagctgggtccgggagtcagctgggccagcgtttgagtctttgtctgactggct-gctgagtgactctgggcaggttgctttgctt------------------tgctggatca--g-ttttc----tcatctgtaaaattgggacgctttgggagagga-------gggtcaggaggattaaatggaggaacgcaacaa-------agcacagggccgggcaca---------------GCACG--ACAC----TGGCACAGACTCAGCACATGTTTAGGGCTTTC------AGACCTGCACC-----TGTTAACAG--C-AAAGCCT------GGCGGGCGGGGCCCCGGCTGTGAAA-TTGTCTCCACCCCTCCTGCCCATG--GGCTGC-------AGCAGGTCCTCT-GCCCTGTCCCTCGGGAACAGCGGTGTCTC-GCCCACGTCTCTGCTCACTGCTGCATCAGGGCTCCATCCCGGGGCCCCTGCCCAGGCCTC-
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     14236 413 -     28805 TCAGATTTGGGCCCTgagctgggccctggagtcggctgggccagcgtttgagtctttgtcccactggct-gctgagtgactctgggcaggttgctttgctt------------------tgctgggtcactg-ttttc----tcatctgtaaaattggaacagcttaggagagga-------gggtcgggaggattaaatgaaggaatgcaacga-------agcacagggctgggcaca---------------gcacg--acac----cggcacagactcagtgcACGTTTATGGCT--------------------------GATAACAA--T-GAAGCCT------GGCAGGCTGGGCCCTGGCTGTGAAACCTGTCTCCTCTCCTCCTGCCCATG--GGCTGC-------GGCAGGTCCTCT-CCCCTGTCCCTTGGGCACAGTGGTGTCTC-GTCCACATCTCTGCCCACTGCTGCATCAGGGCTCCATCCCGGGGCCCCTGCCCAGGCCTC-
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59998289 422 + 169600520 TCAGATTTGGGCCCTgagctgggtcctggagtcagctgggccagcatttgagtctttgtcccactggct-gctgagtgactctgggcaggttgctttgctt------------------tgctgggaccctg-tttcc----tcatctgcaaaactgggacagcttgggagagga-------gggttgggaggattaaatgaaggaactcaatga-------agcacagggccaggcaca---------------GCACG--ACAC----TGGCACAGACTCA------GTTTAGGGTTTTC------AGACCCACACC-----TAATAACAA--C-GAAGCCT------GGTGGGCTGGGCCCTGGCTGTGAAACCTGTCTCCTCCCCTCCTGCCCAAG--GGCTGC-------TGCAGGTCCTCT-GCCCTGTCCCTCAGGCACAGCGTTGTCTT-GCCCACGTCTCTGCCCACTACTGCATCAGGGCTCCATCCCAGGGCCCCTGCCCAGGCCTC-
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61599193 424 + 171882078 TCAGATTTGGGCCCTGAACTgggtcctggagtcagctgggccagcatttgagtctttgtcccactggct-gctgagtgactctgggcaggttgctttgcctgaacagactgcccagtgactctgggtcactg-ttttc----tcatctgtaaaattggaacagcttaggagacaa-------gggtcgggaggattaaatgaaggatcgtaatga-------ggcacaggaccaggcaca---------------gcaca--acac----tggcacaGA--CAGCGCACGTTTAGGA---------------------C-----TGATAACAA--T-GAAGCCT------GGTGGGCTGGGCCCTGGCTGTGAAACCTGTCTCCTCCCCTCCTGCCCATG--GGCTGC-------TGCAGGTCCTCT-GTC-----CCTCAGGCACAGCGTTGTCTT-GCCCACGTCTCTGCCCACTGCTGCGTCAGGGCTCCATCCTGGGGCCCCTGCCCAGGCCTC-
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3922723 427 +   4820037 TCAGATTTGGGCCCTGAACTgggtcctggagtcagctgggccagcg-ttgagtctttgtcccactggct-gctgagtgactctgggcaggttgctttgctt------------------tgctaggtcactg-ttttt----tcatctgtaaaattgggacagcttgggagagga-------gggttgggaagattaaatgaacgaacacaacaa-------agcacagggctgggcaca---------------gtacg--acac----tggcacagactcagcgcATGTTTAGGGCTTTC------AGACCCACACC-----TGATAACAA--C-GAAGCCT------GGTGGGCTGGGCCCCGGCTGTGAAACCTGTCTCCTCCCCTCCTGCCCAAG--GGCTGC-------TGCAGGTCCTCT-GCCCTGTTCCTCGGGCACAGTGGTGTCTC-GCCCACATCTCTGCCCACCGCTGCATCAGGGCTCCATCCCGGGGCCCCTGCCCAGGCCTC-
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9785261 429 +  10730278 TCAGATTTGGGCCCTGAACTgggtcctggagtcagctgggccagcgtttgagtctttgtcccactggct-gctgagtgactctgggcaggttgctttgctt------------------tgctaggtcactgtttttt----tcatctgtaaaattgggacagcttgggagagga-------gggttgggaagattaaatgaacgaacacaacaa-------agcacagggctgggcaca---------------gcacg--acac----tggcacagactcagcgcATGTTTAGGGCTTTC------AGACCCACACC-----TGATAACAA--C-GAAGCCT------GGTGGGCTGGGCCCCGCCTGTGAAACCTGTCTCCTCCCTTCCTGCCCATG--GGCTGC-------GGCAGGTCCTCT-GCCCTGTTCCTCGGGCACAGCGGTGTCTC-GCCCACATCTCTGCCCACCGCTGCATCAGGGCTTCATCCCGGGGCCCCTGCCCAGGCCTC-
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1327291 424 +  24206276 TCAGATTTGGGCCCTGAACTgggtcctggagtcagctgggccagcatttgagtctttgtcccactggct-gctgagtgactctgggcaggttgctttacctgaacagactgcccagtgactctgggtcactg-ttttc----tcatctgtaaaactggaacagcttaggagacaa-------gggtcgggaggattaaatgaaggattgtaatga-------ggcacaggaccaggcaca---------------GCACA--ACAC----TGGCACAGA--CAGCGCACGTTTAGGA---------------------C-----TGATAACAA--T-GAAGCCT------GGTGGGCTGGGCCCTGGCTGTGAAACCTGTCTCCTCCCCTCCTGCCCATG--GGCTGC-------TGCAGGTCCTCT-GTC-----CCTCAGGCACAGCGTTGTCTT-GCCCACGTCTCTGCCCACTGCTGGGTCAGGGCTCCATCCTGGGGCCCCTGCCCAGGCCTC-
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3926623 428 +   4030761 TCAGATTTGGGCCCTGAACTgggtcctggagtcagctgggccagcgtttgagtctttgtcccactggct-gctgagtgactctgggcaggttgctttgctt------------------tgctaggtcactg-ttttt----tcatctgtaaaattgggacagcttgggagagga-------gggttgggaagattaaatgaacgaacacaacaa-------agcacagggctgggcaca---------------gcacg--acac----tggcacagactcagcgcATGTTTAGGGCTTTC------AGACCCACACC-----TGATAACAA--C-GAAGCCT------GGTGGGCTGGGCCCCGGCTGTGAAACCTGTCTCCTCCCTTCCTGCCCATG--GGCTGC-------GGCAGGTCCTCT-GCCCTGTTCCTCCGGCACAGCGGTGTCTC-GCCCACATCTCTGCCCACCGCTGCATCAGGGCTCCATCCCGGGGCCCCTGCCCAGGCCTC-
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4032535 428 +   5013933 TCAGATTTGGGCCCTGAACTgggtcctcgagtcagctgggccggcgtttgagtctttgtcccactggct-gctgagtgactctgggcaggttactttgctt------------------tgctgggtcactg-ttttt----tcatctgtaaaattgggacagcttgggagagga-------gggttgtgaagattaaatgaacgaacacaacaa-------agcacagggctgggcaca---------------gcacg--acac----tggcacagactcagcacATGTTTAGGGCTTTC------AGACCCACACC-----TGATAACAA--C-GAAACCT------GGTGGGCTGGGCCCCGGCTGTGAAACCTGTCTCCTCCCCTCATGCCCATG--GACTGC-------GGCAGGTCCTCT-GCCCTGTCCCTCGGGCACAGCGGTGTCTC-GCCCACATCTCTGCCCACTGCTACATCAGGGCTCCATCCCGGGGCCCCTGCCCAGGCCTC-
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113753671 441 - 132174527 TCAGCTCTGGGCCCTgagctgggccctggagtcagctgggccagcgttcaagtctttgtcccactggct-gctgagtgactctgggcaggttgctttgcct------------------ctctgggtcactg-ttttc----tcatctgtaatacgggcatagtttgggagagga-------ggggcgggaggattaaataaagtaacgggatga-------agcacagggctgggcacagactcagtgGGCACAGCACG--ACAC----TGGCACAGACTTGGAGCATGTTTAGGGCTTTC------AGACCCGCATC-----TGATAACAA--C-GAAGCCT------GGCGGGCTGGGCCCTGGCTGTGAAACCTGTCTCCTCCCCTCCTGCCTGTG--GGCTG--------GGCAGGTCCTCG-GCCCCATCCCTTGGGCACAGCGGTGTCTC-GCCCATGTCTCTGCCCGCTGCTGAATTAGGGCTCCATCCTGGGG-CTCTGCCCAGGTCTC-
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   91799 441 -    125141 TCAGCTCTAGGCCCTgagccgggccctggaatcagttgggccagggttcgagtcttcgtcccactggct-gctgagtgactctgggcgggttgctttgcct------------------tgctgggtcgctg-ttttc----tcatctgtaaaacggggacagcttgggagagga-------gggttgggaggattaaatgaagtaacaggatga-------agcacagggccgggcacagactcggcgGGCACAGCACG--ACAC----TGGCACAGACTCGGCACACATTCAGGGCTTTC------AGACCCGCACC-----TGGTAATAA--C-GAAGCCT------GGCGGCCCGGGCCCTGGCTGTGAAACCTGTCTCCTCCCCTCCTGCCTGTG--GGCTG--------GGCAGGTCCTCT-GCCCCATCGCTCGGGCACAGCGGTGTCTT-GCCCACGTCTCTGCCCGCTGCTGCATTAGGGCTCCATCCCGGGG-CTCTGCCCAGGCCTC-
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1            100561 437 +  11725426 TCAGCTGTGGGCCCTgagccgggccctggagtcagctgggccagggtttgagtctttgtcccactg----gctgagtgactctgggcaggctgctttgcct------------------tgctgggtcactg-ttttc----tcatctgtaaaatggggacagcttgggagagga-------gggtcaggaggattaaatgaagtaacaggatgg-------agcacagggccgggcataGACTCGGTGGGCACCGCACG--ACAC----TGGCACAGACTTGGCGCACGTTCAGGGCTTTC------AGACCCGCACC-----TGATAACAA--C-GAAGCCC------GGTGGGCTGGGCCCCGGCTGTGAAACCTGTCTTA-CCCCTCCTGCCTGTG--GGCTG--------GGCAGGTCCTCT-GCCCCACCCCTCGGGCACAGCTGTGTCTC-GCCCACGTCTCTGCCCGCTGCTGCATTAGGGCTCCATCCTGGGG-CTCTGCCCAGGCCTC-
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            693638 440 +    730879 TCAGCTCTGGGCTCTgagccgggccctggaatcagttgggccagggttcgagtctttgtcccactggct-gctgagtgactcggggcaggttgctttgcct------------------tgctgggtcgctg-ttttc----tcatctgtaaaatggggacagtttgggagagga-------gggtcgggaggattaaatgaagtaacttgatga-------agcacagggccgggcacagactcggcgGGCACAGCACG--ACGC----TGGCACAGACTCGGTGCACGTTCAGGGCTTTC------AGACCCGCACC-----TGATAACAA--C-GAAGCCT------GGCGGGCTGGGCCCCGGCTGTGAAACCTGTCCCCTCCCCTCCTGCCTGTG--GGCT---------GGCAGGTCCTCT-GCCCCATCCCTCGGGCACAGCGGTGTCTC-GCCCACGTCTCTGCTCGCTGCGGTATCAGGGCTCCATCCTGGGG-CTCTGCCCAGACCTC-
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5789579 323 -  36342412 tcagatcc-ggccctgagccagacccgagagtga-----------------------------------------------ctgggcaggttgcttggcct------------------tgctgggccatta-ctttc----tcatctgtagaatggggacagcttggggtggga-------gtgttgcaaggatt-aatgaagtaacacagtgg-------agtaaaggcttgggaaaa-----------------------cat----tg--ACAGATTAAACTTACTTTTAAGGCTTT-----------------T-----TAAAAACAT--CAGACTCCT------AGTTGAAAGA---------ATAAAAACTTCTACCACTTCCCCCG--------------------------------------TGTCCCTTGGGCATGATGG-GTCCC-ACCTAAGTCTCTGCCCACTGGTGCATCCAGGTTCCGTCC-AGGGCCCCTGCCCAGGCCCA-
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90196509 294 + 124595110 -------------------------------tca-------------ttgggtgcttgacccactggct-gctgaatgactctgggcagg-tgctttgcct------------------tgctgggctgttt-tttcccccttcatctttaaattgggggCAGCAT-GGAGCGAG-------GAGTGGACAAATCTGAACGG------------------------CAGAGCCT---------------------GTATT--GTGC----CAGCAGAGATTAA---------------------------------ACC-----TGAGAACAGGCT-GACTCAG------GGTGG---GGACCACACCTGAGACACGCTTTCTCTCTCTGCTGGTA-------------------GCCACACCTTCT-G---TGTCTCATGGGTACCATGGTGCCTC-ATCTCAGGGTCTGCCTT----------------------------CTCTGTGCAGGCATC-
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58220137 297 +  91889043 ------------------------------------------------ccagtccttgcccc-ctggct-gctgagtggctctgggcaggtggcctggcct------------------tgctgggcctctg-gtttc----tcatgtgcaagacgggggt---------------------------gtgggaatgaatagagcagcgcagtga-------ggcgcccagcc---caga---------------gcctg--gcacCATGTGGCAGAGATTAAACCTACTTCTAGAGCTTTTTTTAAAAAAAGTACATCCTAATTGTTAAGAA--T-AGAGCCTGACTCAGGCTGGAGGGCCTCTGGTTGAGGAACCTG-----------------CAGG--GGCTGT-------GGCAGGTCCTCT----CAGCCTCTCGGGTGC---------------------------------------------------------TCCTG----GGCCTC-
i canFam3.chr3                   C 0 I 8
s dasNov3.JH579681                  855289 450 +   1727078 TCAGATTTGTCCCC-------GAGCCtggagtcagctgggcctgcattcaagtccttgacccactggctggcggggagtgcctgggcaggttgctttgcct------------------tgccggccctcag-ttttc----tcatctgtaaaatgggggtaactggggggtgggggaggttgggttgtgaagatgaaatgaagtaacacaatgaagcacttagcacaaggcctggcaAA---------------TTTTGGCACAC----TAATCTTATTTTTGCGAGTTTTTAAAAACTTC------AGACCT-CAAC-----TGATAAGAA--C-AAAGCCTGACTTGGGTGGCC--GGCCCTGATTGAGAAACCTTCTCCCTCCCCTCCCGCCTGTGCTGGCCACCCACCATGGTGGGTCCTCCAGCCATGCCACCTGGGTGCTGCAGTGTCCCTGTCCACACCCCTGCCCATGGATGCACCAAGGCTCCATCCCAG---CCTTGTGGAAGTGCTG
i dasNov3.JH579681               C 0 C 0
e panTro5.chr15                   59832338  58 +  83230942 I

a score=610146.000000
s hg38.chr15_KI270850v1_alt          41066 77 +    430880 TCAGTCATGTCCCGTG---TGAGGGGCTCACTGCCCTGCCGCCCCAAGGGCTGT-CCCATGGTTCTCATGCCCCTTCCCTC------------
s panPan2.chr15                   23067184 77 -  99763055 TCAGGCATGTCCTGTG---TGAGGGGCTCACTGCCCTGCAGCCCGGAGGGCTGT-CCCACGGTTCTCACGCCCCTTCCCTC------------
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            332371 77 -    378907 TCAGGCATGTCCCGTG---TGAGGGGCTCACTGCCCTGCCGCCCCAAGGGCTGT-CCCATGGTTCTCATGCCCCTTCCTTC------------
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     14649 77 -     28805 TCAGGCATGTCCCATG---TGAGGGGCTCACTGCCCTGCAGCCCCGAGGGCTGT-CCCACGATTCTCATGCCCCTCCCCTC------------
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59998711 77 + 169600520 TCAGGTGTGTCCCATG---TGAGGGGCTCACTGCCTGGCAGCCCCATGGGCTGT-CCCACTGTTCTCATGCCCCTCCCCTC------------
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61599617 77 + 171882078 TCAGGTGTGTCCCGTG---TGAGGGGCTCACTGCCCAGGAGCCCTGAGGGCTGT-CCCACTGTTCTCATGCCCCTCCCCTC------------
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3923150 77 +   4820037 TCAGGCATGTCCCTGG---TGAGGGGCTCACTGCCCAGGAACCCGGAGGGCTGT-CCCACTGTTCTCATGCCCCTCCCCTC------------
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9785690 77 +  10730278 TCAGGCATGTCCCTGG---TGAGGGGCTCACTGCCCAGGAACCCCGAGAGCTGT-CCCACTGTTCTCATGCCCCTCCCCTC------------
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1327715 77 +  24206276 TCAGGTGTGTCCCGTG---TGAGGGGCTCACTGCCCAGGAGCCCTGAGGGCTGT-CCCACTGTTCTCATGCCCCTCCCCTC------------
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3927051 77 +   4030761 TCAGGCATGTCCCTGG---TGAGGAGCTCACTGCCCAGGAACCCCGAGGGCTGT-CCCACTGTTCTCATGCCCCTCCCCTC------------
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4032963 77 +   5013933 TCAGGCATGTCCCGTG---TGAGGGGCTCACTGCCCAGGAACCCCGAGGGCTGT-CCCACTGTTCTCATGCCCCTCCCCTC------------
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113754112 78 - 132174527 TCGGGCATGTCCTGTG---CGAGGGGCTTGCTGCCCTGCAGCCTCGAAGGCTGTCCCCACTGTTCTCATGGCCCTCCCCAC------------
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   92240 78 -    125141 TCAGGCATGTCCCATG---TGAGGGGCTCGCTGCCCTGCAGCCTCGAGGGCTGTCCCCACTGTTCTCATGCCACTCTCCGC------------
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1            100998 78 +  11725426 TCAGGCATGTCCCGTG---CAAGGGGCTCACTGCCCTGCAGCCTTGAGGGCTGTCCCCACTGTTCTCACGCCCCTCCCCGC------------
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            694078 78 +    730879 TCAGGCATGTCCCGTG---CGAGGGGCTCGCTGCCCTGCAGCCTCGAGGGCTGTCCCCACTGGTCTCACGCCCCTCCCCAC------------
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5789902 74 -  36342412 TCAGGCATGTCCCGTG---TGAGGGGCTTGCAGTTCTGTGACCCTGAGGACTGC-CCC--TGTCCCTATG-CCCACCCCTC------------
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90196803 44 + 124595110 CTGTGTGTGTTTC------------------------GCATCTCC--------T-CTTACTTGTATCTTGCC----CTCAT------------
i mm10.chr9                      C 0 C 0
s dasNov3.JH579681                  855739 76 +   1727078 ----GCAGCTCCTGCAGCCTGGGGGCTTCCCCCCCTCGCAGA-------------GCCTCTGCTCTAGGCCCCCTCCCCAGAATGCCCTCCTC
i dasNov3.JH579681               C 0 C 0
e canFam3.chr3                    58220434  8 +  91889043 I
e panTro5.chr15                   59832338 58 +  83230942 I

a score=8378600.000000
s hg38.chr15_KI270850v1_alt          41143 914 +    430880 TGCAGCAGCCGATCCCACAAGT-GAGAG-TGGGGTTCCAGCACCAAGTGGGCTCTAGGAAT-----------------GGGAACAGGTCCT-CCA-GGAGGCACTGAGAGGGCGGCTGGGAGCAAGGGCAGGCCAGTCAGGCACAG-GGCGCAGGGACGGCTTCCCAGAGGAGGTGTCCCTG----------------CCCCCA---------------CTGCTAGGGCTGGCCCTGGAGACACTCATTCCTCC-CC-TGCTC-CCCCCAGTGCTCAGGCCCCTGTGGTGGTGGCATCCAGTGGTCACACACTGGTCAAGTGTGTCAACACCCAGACGGGGCTACCCGAGGAAGACAGTGACCAGTGTGGCCACGAGGCCTGGCCTTGTGAGCTCCCGGCTGTGTGGCACCGAGGATTGTGAGCCCGTCGAGCCTCCCCGTGA--GTCCC------------------------------CCGACCCCAAGCTCTCTGCTGAAGTGAGGTGGGGC--GGGAAGGGTGATGG---------GGAAATTGGGTCT--TCAAACCATTGCACCCACGGCACCGGCTGGCTC--CATCTGTAGTCTGGGCTCAGGAGCCA--------------CTGAAAATCCTGATGCCACAGGATCCCATGCTGGAGGCT--TGG-------CTGTGCTGGGAGTCAG--TCAAGAGA-AGTCCCAGCTACAC--------------AA-CATCCC---GCAGGCAGC--TTT--C--TGACCTC----------------------CGGTGAGTAGAGGGAGTGGCcttggcccctgattt--gctgtgtgaacctgggtaagctct-tt-cccctctgggtctcagta--ttcc-catagtgagaccagggATGTCCCTGAAGCTGTGTGAAAACTGGGCCTGGGTGAG----TCCCTGTCCCCTCCCCAGCCCTAGCCTGTCCATTCCCTGGCC---AGA---GGACTGCCTAGAGTGAGCAATGGAACC----------------------------------------------------------------------ACAGGAAG-GGCCTCCCTTCCAGGGTC----------------------------------------------------CTGCTAA-T----------------------------------------------------CCCAGTGGTGGGGGGTTTCCTGGCCAGCTGGG---TCCTGGTGGAAGGGCCTG
s panPan2.chr15                   23067261 964 -  99763055 TGCAGGAGCCGATCCCACAAGT-GAGAG-TGGGGTTCCAGCACCAAGTGGGCTCTAGGAAT-----------------GGGACCAGGTGCT-CCA-GGAGGCACTGAGGGGGCGGCTGGGAGCAAGGCCAGGCCAGTCAGGCACAG-GGTGCAGGGACGGCTTCCCAGAGGAGGTGTCCCTG----------------CCCCCA---------------CTGCTAGGGCTGGCCCTGGAGACACTCATTCCTCC-CC-TGCTC-CCCCCAGTGCTCAGCCCCCTGTGGTGGTGGCGTCCAGCGG---CGC-CTGGTCAAGTGTGTCAACACCCAGACAGGGCTGCCCGAGGAAGACAGTGACCAGTGTGGCCACGAGGCCTGGCCT-GAGAGCTCCCGGCCGTGTGGCACCGAGGATTGTGAGCCCGTCGAGCCTCCCCGTGA--GTCCC------------------------------CTGACCCCAGGCTCCCTGCTGAAGTGAGGTGGGGT--GGGGAGGGTGATGG---------GGAAATGGGGTCG--TCAAACCATTGCGCCCACAGCACTGGCTGGTTC--CATCTGTAGTCTGGGCTCAGGAGCCAAGTGG------CCACTGAAAATTCTGATGCCACAGGATGCCATGCTGGAGGCT--GGG-------CCGTGCTGGGAGTCAG--TCAAGGGG-AGTCCCGGCCACAC--------------AA-CATCCC---ATAGGCAGC--TGT--C--TGACCTT----------------------GGGGGAGTAGAGGGAGTGgccctggcccctgattt--gctgtgtgaacctgggtaagctct-tt-ctcctctaggtctcagtc--ttcc-cacagtgagaccagggATGTCCCTGAGGCTGTGTGAAAACTGGGCCTGGGTGAG----TCCCTGTCCCC-----AGCCCTGGCCTGTCCATTCCCTGGCC---AGA---GGACTGCCTAGAGTGAGCAATGGAACC----------------------------------------------------------------------ACAGGAAG-GGCCTCCTTTCCAGGGTC----------------------------------------------------CTGCTAA-TGAGGTAATGGGGTTTGAGGCAGGAAGGTCTTCCCTTCCAGGGTCCTGTTAATCCCAGTGGTGGGGGGTTTCCTGGCCAGCTGGG---TCCTGGTGGAAGGGCCTG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            332448 913 -    378907 TGCAGCAGCCGATCCCACAAGT-GAGAG-TGGGGTTCCAGCACCAAGTGGGCTCTAGGAAT-----------------GGGAACAGGTCCT-CCG-GGAGGCACTGAGAGAGCGgctgggagcaggggcaggccagtcaggcacag-ggcgcagggACGGCTTCCCAGAGGAGGTGTCCCTG----------------CCCCCA---------------CTGCTAGGGCTGGCCCTGGAGACACTCATTCCTCC-CC-TGCTC-CCCCCAGTGCTCAGGCCCCTGTGGTGGTGGCATCCAGTGGTCACACACTGGTCAAGTGTGTCAACACCCAGACGGGGCTACCCGAGGAAGACAGTGACCAGTGTGGCCACGAGGCCTGGCCTTGTGAGCTCCCGGCTGTGTGGCACCGAGGATTGTGAGCCCGTCGAGCCTCCCCGTGA--GTCCC------------------------------CCGA-CCCAAGCTCTCTGCTGAAGTGAGGTGGGGC--GGGAAGGGTGATGG---------GGAAATTGGGTCT--TCAAACCATTGCACCCGCGGCACCGGCTGGCTC--CATCTGTAGTCTGGGATCAGGAGCCA--------------CTGAAAATCCTGATGCCACAGGATCCCATGCTGGAGGCT--GGG-------CTGTGCTGGGAGTCAG--TCAAGAGG-AGTCCCAGCTACAC--------------AA-CATCCC---GCAGGCAGC--TTT--C--TGACCTC----------------------CGGTGAGTAGAGGGAGTGGCcttggcccctgattt--gctgtgtgaacctgggtaagctct-tt-cccctctgggtctcagtc--ttcc-cacagtgagaccggggatGTCCCTGAAGCTGTGTGAAAACTGGCCCTGGGTGAG----TCCCTGTCCCCTCCCCAGCCCTGGCCTGTCCATTCCCTGGCC---AGA---GGACTGCCTAGAGTGAACAATGGAACC----------------------------------------------------------------------ACAGGAAG-GGCCTCCCTTCCAGGGTC----------------------------------------------------CTGCTAA-T----------------------------------------------------CCCAGTGGTGGGGGGTTTCCTGGCCAGCTGGG---TCCTGGTGGAAGGGCCTG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     14726 842 -     28805 TGCAGGAGCTGATTCCACAAAT-GAGAG-TGGGGTTCCAGCACCAAGAGGGCTCTGGGAAT-----------------GGGACCAGATCCT-CCA-GGAGGCACTGAGAGGGCAGCTGGGAGCAAGGACAGGCCAGTCAGGCA--------CAGGGACGGCTTCCCAGAGGAGGTGTCCCTG----------------CCCCCA---------------CTGCTAGGGCTGGCCCTAGAGACACTCATTCCTCC-CC-TGCTC-CCCCCAGTGCTCAGCCCCCTGTGGCGGTGGTGTCCAGCGT---CGC-CTGGTCAAGTGTGTCAACACCCAGACGGGGCTGCCTGAGGAAGACAGTGACCAGTGTGGCCACGAGGCCTGGCCT-GAGAGCTCCCGGCCATGTGGCACTGAGGATTGTGAGCCCGTCAAGCCTCCCCGTGA--GTCCC------------------------------CTGACCCCAGGCTCCCTGCTGAAGTGAGGTGGGAT--GGGGAGGGTGACAG---------GGAAGTGGGGTCG--TGAAACCATTGCACCCACAGCACCGGCTAGCTC--CATCTGTAGTCTGGGCTCAGGAGCCA--------------CTGAAAATCCTGATGCCACAGGATGCCATGCTGGAGGCT--GGG-------CTGTGCTGGGAGTCAG--TCAAGGGG-AGTCCCAGCCACAC--------------AA-CACCCC---ACAGGCAGC--TAT--C--TGGCCTC----------------------AGGGGAGAAGAGGGAGTGgccctggcccctgagtt--gctgtgtgaacctgggtaagctct-tt-ctcctctgggtctcagtc--ttcc-caCAGTGAGGCCAGGCATGGCCCTGAGGCTGTGTGAAAGCTGGGCCTGGGTGAg----tccctgtcctt-----agccctggcctgtccattccctggcc---AGA---GGACTGCCTAGAGTGAGCAATGGAACC----------------------------------------------------------------------GCAGGAAG-GGCCTCCCTCC------C----------------------------------------------------CTGCC--------------------------------------------------------CCCA-------------------------------------------------
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59998788 910 + 169600520 TGCAGGAGCCGATCCCACAAGT-GAGAG-TGGGGTTCCAGCACCAAGTGGGTTCTAGGAGT-----------------GGGACCAGGTCCT-CCA-GGAGGCACTGAGGGGGCGGCTGGGAGCAAGGGCAGGCCTGTCAGGCACAG-GGCACAGGGATGGTTTCCCAGAGGC--CCCCACTG----------------CTGCCA---------------CTGCTAGGGCTGGCCTGGGAGACACTCATTCCTTC-CC-TGTGT-CTCACAGTGCTCAGCCCCCTGTGGCGGTGGTGTCCAGTGG---CGC-CTGGTCAAGTGTGTCAACACCCAGACGGGGCTGCCCGAGGAAGACAGCGACCAGTGTGGCCACGAGGCCTGGCCT-GAGAGCTCCCAGCCGTGTGGCACCGAGGATTGTGAGCCTGTCTTGCATCACCGTGA--GTCCC------------------------------CTGACCCCAGGATCTCTGCTGAAGTGAGGTGGGGC--GGGGAGGGCGATGG---------GGAAATGGGGTCG--TCAAACCATTGCATCCACCGCACCGGCTGGCTC--CATCTGTAGTCTGGGCTCAGGAGCCACGTGG------CCACTGAAAATCCTGATGCCACAGGATGCCATGCCGGAGGCT--GGG-------CTGTGCTGGGAGTCAG--TCAAGGGT-AGTCGCAGTCACAC--------------AA-CATCCC---GCAGGCAGC--TGT--C--TGACCTC----------------------GGGGGAGTAGAGGGAGTggccctggcccctgattt--gctgtgtgaacctgggtaagctct-tc-cccctctgggtctcagtc--ttcc-catagtgagaccggggatGTCCCTGAGGCTGTGTGAAAACTGGGCCTGGGTGAG----TCCCTGTCCCC-----AGCCCTGGCCTGTCCATTCCTCAGCC---AGA---GGACTGCCTAGAGTGAGCAATGGAACC----------------------------------------------------------------------GCAGGAAG-GGCCTCCCTTCCAGGGTC----------------------------------------------------CTGATAA-T----------------------------------------------------CCAAGTAGTAGGGGGTTTCCTGGCCAGCTGGG---TCCTGGTGGAAGGGCCTG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61599694 911 + 171882078 TGCAGGAGCCGATCCCACAAGT-GAGAG-TGGGGTTCCAGCACCAAGTGGGCTCTAGGGGT-----------------GGGACCAGGTCCT-CCA-GGAGGCACTGAGGGGGCGGCTGGGAGCAAGGGCAGGCCTGGCAGGCACAG-GGC-TAGGGACGGCTTCCCAGAGGAGGTGTCACTG----------------TCCCCA---------------CTGCTAGGGCTGGCCCTGGAGAGACTCATTCCTCC-CC-CACTC-TCCCCAGTGCTCAGCCCCCTGTGGCAGTGGTGTCCAGCGG---TGC-CTGATCAAGTGTGTCAACACCCAGACGGGGCTGCCCGAGGAAGACAGCGACCAGTGTGGCCACGAGGCCTGGCCT-GAGAGCTCCCAGCCGTGTGGCACCGAGGATTGTGAGCCTGTCGAGCCTCACCGTGA--GTCCC------------------------------CTGACCCCAGGATCTCTGCTGAAGTGAGGTGGGGC--CGGGAGGGCGATGG---------GGAAATGGGGTCG--TCAAACTATTGCATCCACGGCACCGGCTGGCTC--CATCTGTAGTCTGGGCTCAGGAGCCACGTGG------CCACTGAAAATCCTGATGCCACAGGATGCCATGCCGGAGGCT--GGG-------CTGTGCTGGGAGTCAG--TCAAGGGG-AGTCCCAGTCACAC--------------AA-CATCCC---GCAGGCAGC--TGT--C--TGACCTC----------------------GGGGGAGTAGAGGGAGTGgccctggcacctgattt--gctgtgtgaacctgggtaagctct-tt-cccctctgggtctctgtc--ttcc-catagtgagaccagggATGTCCCTGAGGCTGTGTGAAAACTGGGCCTGGGTGAG----TCCCTGTCCCC-----AGCCCTGGCCTGTCCATTCCCCGGCC---AGA---GGACTGCCTAGAGTGAGCAATGGAATC----------------------------------------------------------------------GCAGGAAG-GGCCTCCCTTCCAGGGTC----------------------------------------------------CTGATAA-T----------------------------------------------------CCAAGTGGTGGGGGGTTTCCTGGCCAGCTGGG---TCCTGGTGGAAGGGCCTG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3923227 923 +   4820037 TGCAGGAGCCGATCCCACAAGT-GAGAG-TGGGGTTCCAGCACCAAGTGGGCTCTAGGAGT-----------------GGGACCAGGTCCT-CCA-GGAGGCACT----------CAGGGAGCAAGGGCAGGCCTGTCAGGCACAG-GGCGCAGGGATGGCTTCCCAGAGGAGGTGTCACTG----------------TCCCCA---------------TTGTTAGGACTGGCCCCGGAGAAACTCATTCCTCC-CC-CACTC-CCCCCAGTGCTCAGCCCCCTGTGGTGGTGGCGTCCAGCGG---CGC-CTGGTCAAGTGTGTCAACACCCAGACGGGGCTGCCAGAGGAAGACAGCGACCAGTGTGGTCACGAGGCCTGGCCT-GAGAGCTCCCGGCCGTGTGGCACCGAGGATTGTGAACCCGTCGAGCTTCCCCGTGA--GTCCC------------------------------CTGACCCCAGGATCTCTACTGAAGTGAGGTGGGGC--GGGGAGGGCGATGG---------GGAAATTGGGTCG--TCAAACCATTGC-------------------------------GTCTGGGCTCAGGAGCCATGTGG------CCACTGAAAATCCTGATGCCACAGGATGCCATGCTGGAGGCT--GGG-------CTGTGCTGGGAGTCAG--TCAAGGGG-AGTCCCAGTCATAC--------------AA-CATCCC---GCAGGCAGC--TGT--C--TGACCTC----------------------GGGGGAGTAGAGGGAGTGgccctggcccctgattt--gctgtgtgaacctgggtaagctct-tt-cccctctgggtctcagtc--tt---cacagtgagaccagggATGTCCCTGAGGCTGTATGAAAActgggcctgggtgag----tccctgtccct-----agccctggcctgtccattccctggcc---AGG---GGACTGCCTAGAGTGAGCAATGGAGCCGCAGGAAGGGCCTCCCTTTCAGGGCCCTGCTGATGAGGTAATGGGGTTT------------------GAGGCAGGAAG-GGCCTCCCTTCCAGGGTT----------------------------------------------------CTGCTAA-T----------------------------------------------------CCCAGTGGTGGGGGGTTTCCTGGCCAGCTGGG---TCCTGGTGGAAGGGCCTG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9785767 933 +  10730278 TGCAGGAGCCGATCCCACAAGT-GAGAG-TAGGGTTCCAGCACCAAGTGGGCTCTAGGAGT-----------------GGGACCAGGTCCT-CCA-GGAGGCACTCAGGgggcggctgggagcaagggcaggcctgtcaggcacag-ggcgcagggATGGCTTCCCAGAGGAGGTGTCACTG----------------TCCCCA---------------TTGTTAGGACTGGCCCCGGAGAAACTCATTCCTCC-CC-CACTC-CCCCCAGTGCTCAGCCCCCTGTGGTGGTGGCGTCCAGCGG---CGC-CTGGTCAAGTGTGTCAACACCCAGACGGGGCTGCCAGAGGAAGACAGTGACCAGTGTGGTCACGAGGCCTGGCCT-GAGAGCTCCCGGCCGTGTGGCACCGAAGATTGTGAGCCCGTCGAGCTTCCCCGTGA--GTCCC------------------------------CTGACCCCAGGATCTCTACTGAAGTGAGGTGGGGC--GGGGAGGGCGATGG---------GGAAATTGGGTCG--TCAAACCATTGC-------------------------------GTCTGGGCTCAGGAGCCATGTGG------CCACTGAAAATCCTGATGCCACAGGATGCCATGCTGGAGGCT--GGG-------CTGTGCTGGGAGTCAG--TCAAGGGG-AGTCCCAGTCATAC--------------AA-CATCCC---GCAGGCAGC--TGT--C--TGACCTC----------------------GGGGGAGTAGAGGGAGTGgccctggcccctgattt--gctgtgtgaacctgggtaagctct-tt-cccctctgggtctcagtc--tt---cacagtgagaccagggATGTCCCTGAGGCTGTGTGAAAACTGGTCCTGGGTGAG----TCCCTGTCCCT-----AGCCCTGGCCTGTCCATTCCCTGGCC---AGA---GGACTGCCTAGAGTGAGCAATGGAGCCGCAGGAAGGGCCTCCCTTCCAGGGTCCTGC------------------TGATGAGGTAATGGGGTTTGAGGCAGGAAG-GGCCTCCCTTCCAGGGTT----------------------------------------------------CTGCTAA-T----------------------------------------------------CCCAGTGGTGGGGGGTTTCCTGGCCAGCTGGG---TCCTGGTGGAAGGGCCTG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1327792 912 +  24206276 TTCAGGAGCCGATCCCACAAGT-GAGAG-TGGGGTTCCAGCACCAAGTGGGTTCTAGGGGT-----------------GGGACCAGGTCCT-CCA-GGAGGCACTGAGGgggcggctgggagcaagggcaggcctgtcaggcacag-ggcgcagggATGGCTTCCCAGAGGAGGTGTCACTG----------------CCCCCA---------------CTGCTAGGGCTGGCCCTGGAGAGACTCATTCCTCC-CC-CACTC-TCCCCAGTGCTCAGCCCCCTGTGGCAGTGGTGTCCAGCGG---TGC-CTGATCAAGTGTGTCAACACCCAGACGGGGCTGCCCGAGGAAGACAGCGACCAGTGTGGCCACGAGGCCTGGCCT-GAGAGCTCCCAGCCATGTGGCACCAAGGATTGTGAGCCTGTCAAGCCTCACTGTGA--GTCCC------------------------------CTGACCCCAGGATCTCTGCTGAAGTGAGGTGGGGC--GGGGAGGGCGATGG---------GGAAATGGGGTCG--TCAAACCATTGCATCCACGGCACCGGCTGGCTC--CATCTGTAGTCTGGGCTCAGGAGCCACGTGG------CCACTGAAAATCCTGATGCCACAGGATGCCATGCCGGAGGCT--GGG-------CTGTGCTGGGAGTCAG--TCAAGGGG-AGTCCCAGTCACAC--------------AA-CATCCC---GAAGGCAGC--TGT--C--TGACCTC----------------------GGGGGAGTAGAGGGAGTGgccctggcacctgattt--gctgtgtgaacctgggtaagcttt-tt-cccctctgggtctctgtc--ttcc-catagtgagaccagggATGTCCCTGAGGCTGTGTGAAAACTGGGCCTGGGTGAG----TCCCTGTCCCC-----AGCCCTGGCCTGTCCATTCCCCAGCC---AGA---GGACTGCCTAGAGTGAGCAATGGAACC----------------------------------------------------------------------GCAGGAAG-GGCCTCCCTTCCAGGGTC----------------------------------------------------CTGATAA-T----------------------------------------------------CCAAGTGGTGGGGGGTTTCCTGGCCAGCTGAG---TCCTGGTGGAAGGGCCTG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3927128 933 +   4030761 TGCAGGAGCCGATCCCACAAGT-GAGAG-TGGGGTTCCAGCGCCAAGTGGGCTCTAGGAGT-----------------GGGACCAGGTCCT-CCA-GGAGGCACTCAGGgggcggctgggagcaagggcaggcctgtcaggcacag-ggcgcagggATGGCTTCCCAGAGGAGGTGTCACTG----------------TCCCCA---------------TTGTTAGGACTGGCCCCGGAGAAACTCATTCCTCC-CC-CACTC-CCCCCAGTGCTCAGCCCCCTGTGGTGGTGGCGTCCAGCGG---CGC-CTGGTCAAGTGTGTCAACACCCAGACGGGGCTGCCAGAGGAAGACAGCGACCAGTGTGGTCACGAGACCTGGCCT-GAGAGCTCCCGGCCGTGTGGCACCGAGGATTGTGAGCCCGTCGAGCTTCCCCGTGA--GTCCC------------------------------CTGATCCCAGGATCTCTACTGAAGTGAGGTGGGGT--GGGGAGGGCGATGG---------GGAAATTGGGTCG--TCAAACCATTGC-------------------------------GTCTGGGCTCAGGAGCCATGTGG------CCACTGAAAATCCTGATGCCACAGGATGCCATGCTGGAGGCT--GGG-------CTGTGCTGGGAGTCAG--TCAAGGGG-AGTCCCAGTCATAC--------------AA-CATCCC---GCAGGCAGC--TGT--C--TGACCTC----------------------GGGGGAGTAGAGGGAGTGgccctggcccctgattt--gctgtgtgaacctgggtaagctct-tt-cccctctgggtctcagtc--tt---cacagtgagaccagggATGTCCCTGAGGCTGTGTGAAAACTGGGCCTGGGTGAg----tccctgtcctt-----agccctggcctgtccattccctggcc---AGA---GGACTACCTAGAGTGAGCAATGGAGCC----------------------------------------------------------------------GCAGGAAG-GGCCTCCCTTCCAGGGCCCTGCTGATGAGGTAATGGGGTTTGAGGCAGGAAGGGCCTCCCTTACAGGGTTCTGCTAA-T----------------------------------------------------CCCAGTGGTGGGGGGTTTCCTGGCCAGCTGGG---TCCTGGTGGAAGGGCCTG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4033040 933 +   5013933 TGCAGGAGCTGATCCCACAAGT-AAGAG-TGGGGTTCCAGCACCAAGTGGGCTCTAGGAGT-----------------GGGACCAGGTCCT-CCA-GGAGGCACTGAGGGGGCGGCTGGGAGCAAGGGCAAGCCTGTCAGGTACAG-GGTGCAGAGGTGGCTTCCCAGAGGAGGTGTCACTG----------------TCCCCA---------------TTGCTAGGACTGGCCCCGGAGAAACTCATTCCTCC-CC-CACTC-CCCCCAGTGCTCAGCCCCCTGTGGTGGTGGCGTCCAGCGG---CGC-CTGGTCAAGTGTGTCAACACCCAGACGGGGCTGCCAGAGGAAGACAGCGACCAGTGTGGTCATGAGGCCTGGCCT-GAGAACTCCCGGCCGTGTGGCACAGAGGATTGTGAGCCCGTCGAGCTTCCCCGTGA--GTCCC------------------------------CTGACCCCAAGCTCTCTGCTGAAGTGAGGTGGGGC--AGGGAGGGCAATGG---------GGAAATGGGGTTG--TCAAACCATTGC-------------------------------GTCTGGGCTCAGGAGCCATGTGG------CCACTGAAAATCCTGATGCCACAGGATGCCATGCTGGAGGCT--GGG-------CTGTGCTGGGAGTCAG--TCAAGGAG-AGTCCCAGTCACAC--------------AA-CATCCC---ACAGGCAGC--TGT--C--TGACCTC----------------------GGGGGAGTAGAGGGAGcagccctggcccctgattt--gctgtgtgaacctgggtaagctct-tt-cccctctgggtctcagtc--tt---cacagtgagaccagggATGTCCCTGAGGCTGTGTGAAAACTGGGCCTGGGTGAG----TCCCTGTCCCC-----AGTCCTGGCCTGTCCATTCCCTGGCC---AGA---GGACTGCCTAGAGTGAGCAGTGGAGCC----------------------------------------------------------------------GCAGGAAG-GGCCTCCCTTCCAGGATCCTGCTGATGAGCTAATGGGGTTTGAGGCAGGAAGGGCCTCCCTTCCAGGGTTCTGCTAA-T----------------------------------------------------CCCAGTGGTGGGGGGTTTCCTGGCCAGCTGGG---TCCTGGTGGAAGGGCCTG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113754190 905 - 132174527 TGCAGGAGACGATCCCACAAAT-GCGAG-TGGGATTCAAGTACCGAGTGGGCTCTAGGCAT-----------------GGGACCAGGCCTTCCCA-GGAGGCAGTGAGGGTGGGGCTGGGAGCAGGGGCAGGCCAGTCAGGCACAG-GGCACAGGGATGGCTTCCCAGTGGAGGTGTCACTG----------------CCCCTG---------------ATGCTAAGGTGGCCCAGGGAGACGCTTCTTCCTCC-CC--ACTC-CCCACAGTGCTCAGCACCCTGTGGTGGGGGCGTCCAGCGG---CGC-CTGGTCAAGTGTGTCAACACCCAGACGGGGCTGCCCGAGGAAGACAGTGACCAGTGTGGCCATGAGGCCTGGCCC-GAGAGCTCCCAGCCGTGTGGCATCGAGGACTGCGAGCCCATCCAGCCGCCCCGTGA--GTCCC------------------------------TGAACTCCTGGCTCTCTGCTAAAGTGAGGTGGGGT--GGGGAGGGTAATGG---------GG-AGTGGGATTG--TCAAACCATCGAAGCCACGGCACCGGCTGGCTC--CATCTGTAGTCTGGGCTCAGGAGCCATGTGG------TCACTGAGAATCCTGAGGCCACAGGATGCCATACTCAAGCCT--GAG-------CTGTGCTGGGAGTTGG--CCCGGAG---GCCCCAGCCACAT--------------GA-TACCCT---GCTGATAGA--TGT--C--TGGCCTC----------------------GGGGGAGGAGAGGGAGAGGCCCTGGCCCCTGAGCT--GCTGTGTGAACCTGCATAAGCTCT-TT-C-CCTCTGGGTCTCAGTC--TTCC-CATAGTGAGGCCGGGGATGTCCCTGAGGCTGTGTGAAAGCTGGGCCTGGGTGAG----GCCGGGTCCCC-----AGCCCTGGCCTGT---TTTCCCTGCC---AGA---GGGCTACCTAGAGTGAGCAGTGGAACT----------------------------------------------------------------------GCAGGGAG-GGCCTCCCTCCCAGGGTC----------------------------------------------------CTGCTAG-T----------------------------------------------------CCCAGCGGCGGGGGGTTTCCTGGCCAGCTGTG---TCCTGGCAGAAGGGCCTG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   92318 905 -    125141 TGCAGGAGACGATCCCATAAAT-GCGAG-TGGGATTCGAGTACCGATTGAGCTCTAGACAC-----------------GGGACCAGGCCCTCCCA-GGTGGCACTGAGGGCGGGGCTGGGAGCAAGGGCAGGCCAGTCAGGCACAG-GGCGCAGGGATGGCTTCCCAGAGGAGGTGTCACTG----------------CCCCTG---------------CCTCTAAGGTGGCCCAGGGAGACACTCCTTCCTCC-CC--ACCC-CCCGCAGTGCTCAGCCCCCTGTGGCGGGGGCATCCAGCGG---CGC-CTGGTCAAGTGTGTCAACACCCAGACAGGGCTGCCCGAGGAAGACAGCGACCAGTGTGGCCATGAGGCCTGGCCC-GAGAGCTCCCGGCCGTGTGGCACCGAGGACTGCGAGCCCATCCAGCCACCCCGTGA--GTCCC------------------------------CGAACCCCTGGCTCTCTGCTAAAGTGAGGTGGGGT--GTGGAGGGTGATGG---------GG-AGTAGGATTG--TCAAACCATCGCACCCATGGCACCGGCTGGCTC--CATATGTAGTCTGGGCTCAGGAGCCACGTGG------CCACT--GAATCCTGAGGCCAT-GGATGCCATGCTGGAGCCT--GGG-------CTGTGCTAGGAGTCAG--CCCGGGG---GTCCCAGCCACAT--------------GA-TATCCT---GCTGGCAGA--TGT--c--tggtctc----------------------ggggtaggagagggagcggccctggcccctgagct--gctgtgtgaacctgcgtaagctct-tt-t-cctctgggtctcagtc--tccc-catAGCGAGGCCAGGGATGTCCCTGATGCTGTGTGAAAGCTGGGCCTGGGTGAG----TCCCGGTCCCC-----AGCCCTGGCCTGCCCATTCCCTGGCC---AGA---GGGCTGCCTACAGCGAGCAGTGGAACC----------------------------------------------------------------------ACAGGGAG-GGCTTCCCTCCCAGGGTC----------------------------------------------------CTGCTAG-A----------------------------------------------------CCCAGCGGTGGGGGGTTTCCTGGCCAGCTGTG---TCCTGGCAGAAGGGCCTG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1            101076 906 +  11725426 TGCAGGAGACGATCCCACAAAT-GAGAG-TGGGGTTTGAGTACTGAGTGGGCTCTGGGCAT-----------------GGGACCAGGCCCTCCCA--GTGGCACTGAGGGCGGGGCTGGGAGCAAGGGCAGGCCAGTCACGCACAG-GGCGCAGGGACGGCTTCCCAGAGGAGGTGTCGCTG----------------CCCCTG---------------CCGCTAAGGTGGCCTAGGGAGACACTCCTTCCTCC-CC--ACCC-CCCGCAGTGCTCAGCCCCCTGTGGCGGGGGCGTCCAGCGG---CGC-CTGGTCAAGTGTGTCAACACCCAGACGGGGCTGCCCGAGGAAGACAGCGACCAGTGTGGCCATGAGGCCTGGCCG-GAGAGCTCCCGGCCGTGTGGCACCGAGGACTGCGAGCCCATCCAGCCACCCCGTGA--GTCCC------------------------------CGAACCCCTGGCTCTCTGCTAAAgtgaggtggggt--ggggagggtgatgg---------gg-agtgggATTG--TCAAACCATCGCGCCCACGGAACCGACTGGTTC--CATCTGCAGTCTGGGCTCAGGAGCCACGTGG------CCACT--GAATCCTGAGGCCACAGGATGCCATGCTGGAGCCT--AGG-------CTGTGCTGGGAGTCAG--CCCGGGG---GTCCCAGCCACAC-------------GGA-TCTCCT---GCTGGCAGA--TGT--C--CGGCCTC----------------------AGGGGAGGAGAGGGAGTGgccctggcccctgagct--gctgtgtgaacctgcgtaagctct-tt-c-cctctgggtctcagtc--ttcc-catAGTGAGGCCAGGGATGTCCCTGAGGCTGTGTGAAAGCTGGGCCTGTGTGAG----TCCCCGTCCCC-----AGCCCTGGCCTGCCCATTCCCTGGCC---AGA---GGGCTGCCCAGAGTGAGCAGTAGAACT----------------------------------------------------------------------GCAGGGAG-GGCTCCCCTCCCAGGGTC----------------------------------------------------CTGCTGG-T----------------------------------------------------CCCAGCGGTGCGGGGTTTCCTGGCCAGCTGTG---TCCTTGCAGAAGGGCCTG
i cebCap1.NW_016107334v1         C 0 I 419
s aotNan1.NW_018503093v1            694156 907 +    730879 TGCAGGAGACGATCCCACAGAT-GCGAG-TGGGGTTTGAATACTGAGTGGGCTCCAGGCAC-----------------GGGACCAGGCCCTCCCA-GGAGGCACTGAGGGTGGGGCTGCGAGCGAGGGCAGGCCAGTCAGGCACAG-GGCGCAGGGATGGCTTCCCAGAGGGGGTGTCACTG----------------CCCCCG---------------CTG-TAAGGTGGCCCAGGGAGACACTCCTTCCTCC-CC--ACCC-TCC-TAGTGCTCAGCCCCCTGTGGCGGGGGCGTCCAGCGG---CGC-CTGGTCAAGTGTGTCAACACCCAGACGGGGCTGCCTGAGGACGACAGCGACCAGTGTGGGCATGAGGCCTGGCCC-GAGAGCTCCCGGCCGTGTGGCACCGAGGACTGCGAGCCCATCCAGCCTCCCCGTGA--GTCCC------------------------------CGAACCCCTGGCTCTCAGCTAAAGTGAGGTGTGGT--GGGGAGGGTGATGG---------GG-AGCAGGATTG--TCAAACCATCGTGCCCACAGCACCGGCTGGCTC--CATCTGTACTCTGGGCTCAGGAGCCACGTGG------CCACTGAGAATCCTGAGGCCACAGGATGCCATGCTGGAGCCT--GGG-------CTGTGCTGGGAGTTGGC-CCCGGGG---GTCCCAGCCACAG--------------GA-TATCCT---GCTGGCAGA--TGT--C--TGGTCTC----------------------GGGGGAGGAGAGGGAGAggccctggcccctgagct--gctgtgtgaacctgcataagctct-tt-c-cctctgggtctcagtc--ttcc-catagtgaggctggggatGTCCCTGAGGCTGTGTGAAAGCTGGGCCTGGGTGAG----TCCCGGTCCCC-----AGCCCTGGCCTGCCTATTCCCTGGCC---AGA---GGATTGCCTAGAGTGAGCAGTGGAACC----------------------------------------------------------------------GCAGGGAG-GGCCTCCCTCCCAGGGCC----------------------------------------------------CTGCTAG-T----------------------------------------------------CCCAGCGGCGGGGGGTTTCCTGGCCAGCTGTG---TCCTGGCAGAAGGGCCTG
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5789976 871 -  36342412 TGAAGAAGAC-------CAAGCAGTGAG-GGGGGTGGCAGTGCCCAGTGGGCCTTGGGAGC-----------------AGGACTGGGCCTT-CCATGGAGGCAGAGAGCTGG-GGCTGGGAG---------GCTGGTCAGGCATAG-GGCACAAGGACAGCTTCCTAGAGG-GGTGGCACTG----------------CCCCTGGGGATGCCTGATTCCCCACAATGGGGGACCTGTGGGACATTCACTCTTCTGCC-CACTC-TGTGCAGTGCTCAGCCCCCTGTGGTGGTGGTGTCCAGCGG---CGC-CTGGTCAAGTGTGTCAACACCCAGACAGGGCTGCCTGAAGAAGACAGTGACCAGTGTGGCCATGAGGTCTGGCCT-GAGAGCTCCCGGCCGTGTGGCACCGAGGACTGTGAGCTGGTTGAGCCTCCGCGTGA--GTGCC------------------------------CCCTCCCAGGGT------------TGTGGTGGGTT--GGGAAGGTC-ATGG---------GGAAGTGGGGAGA--T---GCTGTCGCCCCAGTGGCACTTGCTGGCCC--ATGTTGTAATCTGAGG----------------------------------------CACAGGACACTGTGCAGAAGCTG--GGC-------CTATGTTAGGAGTCAG--CAGAGGGG-AAT-GCAGCCACCT-------------GGG-TGTCTT---GTAGGCAGC--TGT--CTTTAGCCTT----------------------TTGGGAACATAAGGACAGGCCTTGGCCTCTGG-TG--ATtgtgtgaccttgggcaagctctgtt-ctcctct--gtcttagtg--tccc-catAGTGAAGCTAGAGATGGCCCCAAGGCTGTGTGAGGGCTAGGCCGGGCTAAGACCTCCCCTCCCCCA-----AGCTCTGACCTATCTGTT-CCTGGCCAGAAGA---GGATGGCTGGAGGTGAACATTGGAGCT----------------------------------------------------------------------GCAGGAAG-GGGC-CCCTCCCAGGGTC----------------------------------------------------CTGCTAG-TT---------------------------------------------------CCCAGCTGCTGGTGGCTTCCGGGCCAGCTGGGACCTCCTGGCAGAAAGACCTA
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90196847 756 + 124595110 TGCAAGAACAGATACCCCCAGT-GACAG-TGGGG----------AGGTCAGCACTAGG-------------------------------CT-CTA-GT-----------------------------------------------------CAGGGATGGCTTCCTGGAGAGGGTGGTACTGTCCAGTGATGGGCAGTCCCCGA---------------CTGTGATGGCTGGTCCTGGAGACGTTCTCTCCTCT-CT----CC-TATGCAGTGCTCAGCCCCCTGCGGTGGTGGTGTTCAGCGG---CGT-CTGGTCAGATGTGTGAACACTCAGACCGGCTTGGCAGAGGAAGACAGTGACCTGTGTAGCCATGAGGCGTGGCCT-GAGAGCTCACGGCCATGTGCCACTGAGGACTGTGAACTGGTTGAACCCCCACGTGAGTGTCTC------------------------------CTTACTC------------TTAGGGATGGTGGGATAAGGGGAGGATGGCTA---------GGAACTAGAG--------AATCGTCGGTCCTAGAACAGCTGCTG---T--TGTTTACAGTT--GGCTCA--AACCCCATGG------TCACCG-TCACTGGGAGGCCACAGGGTGCCAAG-----------GTC-------CTAAACTGGGACTCAG--CCAAGGGG-AATCCCAAAGATTC--------------AAGCATCCT---GTAGGCAGC--TTT--G--GTAGCCT----------------------CGGGAAGTGGAAGGAGC--------CTCCTGACTCCAGCAGTG---------GCAAGCTTT-TC-TCCCTTGGGGTCTTAGTC--CC---CACAGTGAAG--GGAGATGTCCTTG-GGCTGTG--------------------G----GCACTGCCTAT-----------------------TCCTAGGA---GGA---TAACTGTCCAGAGGTGGCAGTGG-GCC----------------------------------------------------------------------ACAGGAAG-GAC-TCTTTCCCAGGGTG----------------------------------------------------GTGTTGC-T----------------------------------------------------TC------TGCTGTGTTTCCTGGCCAGCTGGGCCATTATGGAGGAAAGGTCTG
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58220442 871 +  91889043 TGCAGC------TCCTGCAGGT-GAG----------------CCTGGTAGGCTCTGAGAG--------------------------------GCA-GGGGGCAACGAGAA---GCCTCAGAAC-TGGACATGC---TCCTGGCCAG-GG--CATGGGCAGCTGCCCCTGGG--GTGCCCTTT----------------CCCCTG--------------------------GCCACAGGGGGCCCTAACCTCTCC-CC-CACACATACACAGTGCTCGGCCCCCTGTGGTGGTGGTGTGCAGCGG---CGC-CTGGTCAGGTGTGTCAACACCCAGACTGGACTGCCCGAGGAGGACAGTGAGCAGTGTAGCCACGAGGCCTGGCCC-GAGAGCTCCCGGCCATGCGGCACCCAGGACTGTGACCTCAGCGAGGCCCCACGTGA--GTGCTGGAGGTCGGGGCAGGGGGGATGGCAGGAGACAGGAGCCAGCTGCCCTG----GGTGATCCGTGAT--TGTGAGGCTGCTGGATGCTGTGCAGAAGCTGGGTTG--T------GTCAGGGCCAGAGCAGAGGGTGTCCT--GCCCTGCAGAC-ACTCCCAGACACCCCTAGGCACCCCCTACGCAACCTCCAGATACCCCAGG-CACCCTGCAGACACCTCCAGG-------C---ACCCGCAGTCAC--CCAAGGAACCCCCCCAGGCACCCTGCAGATACTCTCAGG-CACCCCCAGGCAGGCAGCCTTCT--C--TAGTGCA----------------------GAAACAGGGGAGGCAGCAGActtggcccct-agtt--gccgtgtgacctcgagcaagcccc-ttgtcccccagggtctcagtG--AGCCGCCCAGTGAGGCCAGG-----------------------------CCTGGGTGCG----CCTCCGTCTCC-----AGCTCTG--------------CAGGA---GGA---GGAGTGCCCAGAGTGTGTGCTGCAGCC----------------------------------------------------------------------GCAGGAAGCGGCCTCCCTTCCAGGGTC----------------------------------------------------CTGCTGGCT----------------------------------------------------GCCTGTGGCCAGCTGCTTCCTGGCCAGCTGTGTCCTCCTGGAGGAAGGGCCCG
i canFam3.chr3                   I 8 C 0
s dasNov3.JH579681                  855815 934 +   1727078 TGCCCCAAC---TCCCTGCAAT-AAGAGCCGGGGTCCAAACACCACGTGGGCTCCGGGAACAGAACTGACCTGCCCAAAGGGCCAGACCCTCCGA-AGAGGCAGCAAGGGGAGGCCTGGGAG----GGGAAGCCACCCAGGCCTGGAGGCAGCAGGAGTGTTTCCTGGAGGAAG----GCTA----------------GCCTAG------------------------------GGGTGGACACTCACCCTTTG-CCTCACTG-CCCACAGTGCTCTGCCCCCTGTGGCGGTGGCGTCCAGCGG---CGC-TTGGTCAAGTGTGTCAACACCCAGACAGGGCTGCCTGAGGAAGACAGTGGCCAGTGCAGCCACGAGGCCTGGCCT-GAGAGCTCCCAGCCGTGCAGTACCCAGGACTGTGGGCTCGCCGAGCCTCTGCGTGA--GTGCT------------------------------CCCACCCCTGGCTCCCTATTGGGGTGAG--GGTGT--ATGGACGGTTG-GG---------AGAAATGGGGATGCATCAAACCATTGTCCCCAGAGCACTGGCTGACACATCCTCTATGGTCTAGTTTCAAGAGCCATGTGG------CCACAGATAATCACGTGCCCGCAGGAGACCACTGTGAGGCCT--CAGGGTGCCACTGTGCTGGGAATCAGAGTCCAGGGG--GTCCCAGCCAAAC-------------AGA-TACACT---GGAGGCAGC--TTTTGC--CAGCCTCGGGAAGGTTGGAGGAAGCTGGTGGGAGGGTTGATGAAGtggcttgggcgcctcagtt--gctgtgtgaccttgagcaagc----tt-cccctctgtgtctcagttAGCCCC-CATGGTGAGGCCAGGGATTTCCCCAAGGCCGTGGGAAGGCCAATCCCGGGGAAA----CCCCTCTCCCC-----AGCTCTGGCCTATCCATTTCCTGGCC---AGAGAGGGACTGCCCAGAGTGAGTAGTGGAGCT-----------------------------------------------------------------------------------TTCCTTCCAGG-CC----------------------------------------------------CTGCCAGCT----------------------------------------------------CCCAGCGGCCGGTGGCTTCCTGGCCAGCTGGGTCCTTCTGGCGGAAGGGCCTG
i dasNov3.JH579681               C 0 C 0
e panTro5.chr15                   59832338  58 +  83230942 I

a score=32826.000000
s hg38.chr15_KI270850v1_alt          42057 3 +    430880 AGC
s panPan2.chr15                   23068225 3 -  99763055 AGG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            333361 3 -    378907 AGC
i gorGor5.CYUI01015946v1         C 0 C 0
s rheMac8.chr7                    59999698 3 + 169600520 AGC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61600605 3 + 171882078 AGC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3924150 3 +   4820037 AGC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9786700 3 +  10730278 AGC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1328704 3 +  24206276 AGC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3928061 3 +   4030761 AGC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4033973 3 +   5013933 AGC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113755095 3 - 132174527 AGC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   93223 3 -    125141 AGC
i saiBol1.JH378378               C 0 C 0
s aotNan1.NW_018503093v1            695063 3 +    730879 AGC
i aotNan1.NW_018503093v1         C 0 I 733
s otoGar3.GL873530                 5790847 3 -  36342412 AGC
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90197603 3 + 124595110 AGC
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58221313 3 +  91889043 AGC
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  856749 3 +   1727078 AGG
i dasNov3.JH579681               C 0 C 0
e cebCap1.NW_016107334v1            101982 419 +  11725426 I
e nomLeu3.chr6_GL398151_2_random     15568 0 -     28805 C
e panTro5.chr15                   59832338 58 +  83230942 I

a score=60381.000000
s hg38.chr15_KI270850v1_alt          42060 19 +    430880 TAGAGGTGGTTCTGGATA------T
s panPan2.chr15                   23068228 19 -  99763055 TAGAGGTGGTTCTGGACA------C
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            333364 19 -    378907 TAGAGGTGGTTCTGGATA------T
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     15568  4 -     28805 ---------------aca------c
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59999701 18 + 169600520 TAGAGGTGGTTCTGGAT-------A
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61600608 19 + 171882078 TAGAGGTGGTTCTCCACA------A
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3924153 19 +   4820037 TAGAGGTGGTTCTCCACA------A
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9786703 19 +  10730278 TAGAGGTGGTTCTGCATA------A
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1328707 19 +  24206276 TAGAGGTGGTTCTGGATA------C
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3928064 25 +   4030761 TAGAGGTGGTTCTGCACAACGCCGC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4033976 19 +   5013933 TAGAGTTGGTTCTGCACA------A
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113755098 17 - 132174527 -CAAAGTGG-TCTGGACA------C
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   93226 17 -    125141 -CAAAGTGG-TCTGGACA------C
i saiBol1.JH378378               C 0 I 3855
s otoGar3.GL873530                 5790850 18 -  36342412 TGGAGGTCC-CCTGGATA------C
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90197606 19 + 124595110 CAGAGGTAGCTCTGGAAA------T
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58221316 18 +  91889043 CAGAGGTGGCAGTGGACA-------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  856752 15 +   1727078 CAGAGGCGGCTCTGG----------
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            695066 733 +    730879 I
e cebCap1.NW_016107334v1            101982 419 +  11725426 I
e panTro5.chr15                   59832338 58 +  83230942 I

a score=4613.000000
s hg38.chr15_KI270850v1_alt          42079 6 +    430880 CCCAAC
s panPan2.chr15                   23068247 6 -  99763055 CCCCGC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            333383 6 -    378907 CCCACC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     15572 6 -     28805 acacac
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59999719 6 + 169600520 CCCCAC
i rheMac8.chr7                   C 0 I 5
s macFas5.chr7                    61600627 6 + 171882078 CCCCGC
i macFas5.chr7                   C 0 I 3
s macNem1.NW_012011533v1           3924172 6 +   4820037 CCCCGC
i macNem1.NW_012011533v1         C 0 I 33
s cerAty1.NW_011999477v1           9786722 5 +  10730278 CCCCG-
i cerAty1.NW_011999477v1         C 0 I 1
s chlSab2.chr29                    1328726 6 +  24206276 CCCACC
i chlSab2.chr29                  C 0 I 1
s manLeu1.NW_012102632v1           3928089 6 +   4030761 CGCTGC
i manLeu1.NW_012102632v1         C 0 I 1
s colAng1.NW_012114844v1           4033995 6 +   5013933 CCCCGC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113755115 5 - 132174527 -CCTGA
i calJac3.chr10                  C 0 I 1
s saiBol1.JH378378                   97098 5 -    125141 -CCCGA
i saiBol1.JH378378               I 3855 I 2
s otoGar3.GL873530                 5790868 2 -  36342412 -CC---
i otoGar3.GL873530               C 0 C 0
e aotNan1.NW_018503093v1            695066 733 +    730879 I
e mm10.chr9                       90197625 0 + 124595110 C
e dasNov3.JH579681                  856767 0 +   1727078 C
e canFam3.chr3                    58221334 0 +  91889043 C
e cebCap1.NW_016107334v1            101982 419 +  11725426 I
e panTro5.chr15                   59832338 58 +  83230942 I

a score=3883.000000
s hg38.chr15_KI270850v1_alt          42085 11 +    430880 CCCCCACCTCC
s panPan2.chr15                   23068253 10 -  99763055 CGCC-GCCTCC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            333389 10 -    378907 CCCC-GCCTCC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     15578 10 -     28805 acac-acacac
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    59999730 10 + 169600520 CCCC-GCCTCC
i rheMac8.chr7                   I 5 C 0
s macFas5.chr7                    61600636  8 + 171882078 TCAC-ACAC--
i macFas5.chr7                   I 3 I 414
s cerAty1.NW_011999477v1           9786728 10 +  10730278 CGCT-GCCTCC
i cerAty1.NW_011999477v1         I 1 C 0
s chlSab2.chr29                    1328733 10 +  24206276 CCCC-GCCTAC
i chlSab2.chr29                  I 1 C 0
s manLeu1.NW_012102632v1           3928096 10 +   4030761 TCCA-Gcacac
i manLeu1.NW_012102632v1         I 1 C 0
s colAng1.NW_012114844v1           4034001 10 +   5013933 CGCT-GCCTCC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113755121 10 - 132174527 CCCT-GCTGCT
i calJac3.chr10                  I 1 C 0
s saiBol1.JH378378                   97105 10 -    125141 CCCT-GCTCCT
i saiBol1.JH378378               I 2 C 0
s mm10.chr9                       90197625  6 + 124595110 ---C-ACCTC-
i mm10.chr9                      C 0 C 0
e aotNan1.NW_018503093v1            695066 733 +    730879 I
e dasNov3.JH579681                  856767  0 +   1727078 C
e canFam3.chr3                    58221334  0 +  91889043 C
e cebCap1.NW_016107334v1            101982 419 +  11725426 I
e otoGar3.GL873530                 5790870  0 -  36342412 C
e macNem1.NW_012011533v1           3924178 33 +   4820037 I
e panTro5.chr15                   59832338 58 +  83230942 I

a score=990.000000
s hg38.chr15_KI270850v1_alt          42096 1 +    430880 A
s panPan2.chr15                   23068263 1 -  99763055 A
i panPan2.chr15                  C 0 I 42
s gorGor5.CYUI01015946v1            333399 1 -    378907 A
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     15588 1 -     28805 a
i nomLeu3.chr6_GL398151_2_random C 0 I 15
s rheMac8.chr7                    59999740 1 + 169600520 A
i rheMac8.chr7                   C 0 I 54
s cerAty1.NW_011999477v1           9786738 1 +  10730278 A
i cerAty1.NW_011999477v1         C 0 I 36
s chlSab2.chr29                    1328743 1 +  24206276 C
i chlSab2.chr29                  C 0 I 15
s manLeu1.NW_012102632v1           3928106 1 +   4030761 a
i manLeu1.NW_012102632v1         C 0 I 15
s colAng1.NW_012114844v1           4034011 1 +   5013933 A
i colAng1.NW_012114844v1         C 0 I 32
s calJac3.chr10                  113755131 1 - 132174527 G
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   97115 1 -    125141 G
i saiBol1.JH378378               C 0 C 0
e aotNan1.NW_018503093v1            695066 733 +    730879 I
e mm10.chr9                       90197631 0 + 124595110 C
e dasNov3.JH579681                  856767 0 +   1727078 C
e canFam3.chr3                    58221334 0 +  91889043 C
e cebCap1.NW_016107334v1            101982 419 +  11725426 I
e otoGar3.GL873530                 5790870 0 -  36342412 C
e macNem1.NW_012011533v1           3924178 33 +   4820037 I
e macFas5.chr7                    61600644 414 + 171882078 I
e panTro5.chr15                   59832338 58 +  83230942 I

a score=143881.000000
s hg38.chr15_KI270850v1_alt          42097 25 +    430880 acacacacacacacacactcacaca
s panPan2.chr15                   23068306 25 -  99763055 acacacacacacacacacacacaca
i panPan2.chr15                  I 42 I 12
s gorGor5.CYUI01015946v1            333400 25 -    378907 acacacacacacacacactcacaca
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     15604 25 -     28805 acacacacacacacacacacacaca
i nomLeu3.chr6_GL398151_2_random I 15 I 14
s rheMac8.chr7                    59999795 25 + 169600520 acacacacacacacactctcacaca
i rheMac8.chr7                   I 54 I 4
s macFas5.chr7                    61601058 25 + 171882078 ACTCACACACACACACACTCACACA
i macFas5.chr7                   I 414 I 4
s macNem1.NW_012011533v1           3924211 25 +   4820037 acacacacacacacacTCTCATACA
i macNem1.NW_012011533v1         I 33 I 4
s cerAty1.NW_011999477v1           9786775 25 +  10730278 acacatacacacatacacTCATACA
i cerAty1.NW_011999477v1         I 36 I 4
s chlSab2.chr29                    1328759 25 +  24206276 gcacccacacacacacactcacaca
i chlSab2.chr29                  I 15 I 4
s manLeu1.NW_012102632v1           3928122 25 +   4030761 acacacacacacatacacTCATACA
i manLeu1.NW_012102632v1         I 15 I 4
s colAng1.NW_012114844v1           4034044 25 +   5013933 acacacacacacacacacTCATACA
i colAng1.NW_012114844v1         I 32 I 4
s calJac3.chr10                  113755132 25 - 132174527 ACACACACACACACACActctctct
i calJac3.chr10                  C 0 I 34
s saiBol1.JH378378                   97116 17 -    125141 ACACACACACACACACA--------
i saiBol1.JH378378               C 0 I 6
s otoGar3.GL873530                 5790870 14 -  36342412 ---CCTACACACACACA--------
i otoGar3.GL873530               C 0 C 0
s dasNov3.JH579681                  856767 17 +   1727078 ----ACACACACACAGGCTTC----
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            695066 733 +    730879 I
e mm10.chr9                       90197631  0 + 124595110 C
e canFam3.chr3                    58221334  0 +  91889043 C
e cebCap1.NW_016107334v1            101982 419 +  11725426 I
e panTro5.chr15                   59832338 58 +  83230942 I

a score=1439419.000000
s hg38.chr15_KI270850v1_alt          42122 145 +    430880 cTTCCTGCAGCCCCAGCTGCTCTCAgcagtgctgagggcaggaaatggggtggccctggagtgtcacctgggctcccctca----------ccagctgtgtggcc----------ttgggctccatttccct-------ctcagggccttcatgtgc---t---gaataaaggggctg
s panPan2.chr15                   23068343 145 -  99763055 CTTCCTGCAGCCCCAGCTGCTCCCAGAAGTGCTGAGGGCAGGAAACGGggtggccctggagtgtcacctaggctcccttca----------ccagctgtgtggcc----------ttgggctcccatttcct-------ctcagggccttcatgtgc---t---gaataaaggggctg
i panPan2.chr15                  I 12 C 0
s gorGor5.CYUI01015946v1            333425 145 -    378907 cTTCCTGCAGCCCCAGCTGCTCTCAGCAGTGCTGAGGGCAGGAAATGGGGTGGCCCTGGAGTGTCACCTGGGCTcccctca----------ccagctgtgtggac----------ttgggctccatttccct-------ctcagggccttcatgtgc---t---gaataaaggggctg
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     15643 145 -     28805 CTTCCTGCAGTCCCAGCTGCTCCCAGCAGTGCTGAGGGCAGGAAATGGGGTGGCCCTGGAGTGTCACCTGGGATcccctcg----------ccagctgtgtgacc----------ttgggctccatttccct-------ctcagggccttcttgtgc---t---gaataaagaggctg
i nomLeu3.chr6_GL398151_2_random I 14 I 105
s rheMac8.chr7                    59999824 143 + 169600520 C-TCCTG-AGTCCCAGCCGCTCTCAGCAGTGCTGATGGCAGGAAACAGGGTGGCCCTGGAGTCTCATCTAGGCTCCCCTCA----------CCAGCTGAGTGGCT----------TTGGGCTCCATTTCCCT-------CTCAGGGCCTTCATGTGC---T---GAATAAAGGGGCCA
i rheMac8.chr7                   I 4 C 0
s macFas5.chr7                    61601087 144 + 171882078 CTTCCTG-AGTCCCAGCCGCTCTCAGCAGTGCTGATGGCAGGAAACAGGGTGGCCCTGGAGTCTCACCTAGGCTCCCCTCA----------CCAGCTGAGTGGCT----------TTGGGCTCCATTTCCCT-------CTCAGGGCCTTCATGTGC---T---GAAGAAAGGGGCCG
i macFas5.chr7                   I 4 C 0
s macNem1.NW_012011533v1           3924240 144 +   4820037 CTTCCTGCAGCCCCAGCTGCTCTCAGCAGTGCTgagggcagaaaatggggtggccctggagtgtcacctaggctcccctca----------ccagctgtgtggcc----------ttgggctccatttccct-------ctca-ggccttcatgtgc---t---gaataaaggggctg
i macNem1.NW_012011533v1         I 4 C 0
s cerAty1.NW_011999477v1           9786804 145 +  10730278 CTTCCTGCAGCCCCAGCTGCTCTCAGCAGTGCTGATGGcaggaaacgtggtggccctggagtgtcacctaggctcctttcg----------ccagctgtgtggcc----------ttgggctccatttccct-------ctcagggccttcatgtgc---t---gaataaaggggctg
i cerAty1.NW_011999477v1         I 4 C 0
s chlSab2.chr29                    1328788 145 +  24206276 CTTCCTGAAATCCCAGCCGCTCTCAGCAGTGCTGATGGCAGGAAACAGGGTGGCCCTGGAGTCTCACCTAGGCTCCCCTCA----------CCAGCTGAGTGGCT----------TTGGGCTCCATTTCCCT-------CTCAGGGCCTTCATGTGC---T---GAAGAAAGGGGCCG
i chlSab2.chr29                  I 4 C 0
s manLeu1.NW_012102632v1           3928151 145 +   4030761 CTTCCTGCAGCCCCAGCTGCTCTCAGCAGTGCTGATGGcaggaaacgtggtggccctggagtgtcacctaggctcctttcg----------ccagctgtgtggcc----------ttgggctccatttccct-------ctcagggccttcatgtgc---t---gaataaaggggCCA
i manLeu1.NW_012102632v1         I 4 C 0
s colAng1.NW_012114844v1           4034073 145 +   5013933 CTTCCTGCAGCCCCAGCTGCTCTCAGCAGTGCTGATGGcaggaaacgtggtggccctggagtgtcacctaggctccccttg----------ctagctgtgtggcc----------ttgggctccatttccct-------ctcagggccttcatgtgc---t---gaataaaggggctg
i colAng1.NW_012114844v1         I 4 C 0
s calJac3.chr10                  113755191 142 - 132174527 CTTCCTGCAGCCCCAGCTGCTCCCAGCAGTGCTgagtgcaggaaacc--gtggccctggagtctcacctgggctccc-tcg----------ccagctgtgtggcc----------ttgggctccattcccct-------gtcagggacttcatatgt---t---gaatcacggggctg
i calJac3.chr10                  I 34 C 0
s saiBol1.JH378378                   97139 143 -    125141 CTTCCTGCAGCCCCAGCTGCTCCCAGCAGTGCTGAGCAcaggaaacc--atggccctggagtctcacctgggctcccttca----------ccagctgtgtggcc----------ttgggctccatttccct-------atccgggccttcatgtgc---t---gaatcacggggctg
i saiBol1.JH378378               I 6 C 0
s cebCap1.NW_016107334v1            102401 143 +  11725426 CTTCCTGCAGCCCCAGCTGCTCCCAGCGGTGCTGAGTGCAGGAAACC--GTGGCCCTGGAGTCTCACCTGGGCGCCCCTCG----------CCAGCTGTGTGGCC----------TTGGGCTCCATTTCCGT-------GTCACGGCCTTCATGTGC---T---GAATCATGGGGCTG
i cebCap1.NW_016107334v1         I 419 C 0
s aotNan1.NW_018503093v1            695799 156 +    730879 CTTCCTGCAGCCCCAGCTGCTCCCAGCGGTGCTgagtgcaggaaacc--gtggccctggagtctcacctgggcttccctcg----------ccagctgtgtggccttgggctccattgggctccatttccctgt----cgtcagggccttcatgtgc---t---gaatcatggggctg
i aotNan1.NW_018503093v1         I 733 C 0
s otoGar3.GL873530                 5790884 136 -  36342412 CTTCCTGTGG-CCTGGCTAC-CCCAGCAGTGCTGCGTGCAGGAAACTGCATGGCCCTGG-GTCACACCTGGGCTGGCTTTGGGTCACATATCCA---CTGTGGCC----------TTGGGCTCCATTTCCTTTTGCACCCCCATTGCCTCCT--------------------------
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90197631 133 + 124595110 CTTCCTGAAGCTCCAGCTGTCCCCAGCAGTGCCGAACACAGGAAACTGTGTGGCCCTTGAGTCACACCTGGG-------TA----------CCT--------GTC----------TCGGGCTCTGTTTCTCT-------ATCTGGATTGTCATTTCCTCAT---GCATAAAGGGATGG
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58221334 129 +  91889043 -------------CAGCTGCCCTCGG-GGCGCTAAGCACAGGAAGC----TGGCCCTGGAGCCACACCTGGGCGCCC-TCA----------CCAGCTGGGTGGCC----------GTGGGCTCCATGTCCCT-------GTCTGGGCCTCCCCTTCC---TTGAGCACAAAGGGGCTG
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  856784 141 +   1727078 CTTCCTGCAGCCCAAACCGCCCCTACCAGTgctgagcacaggaagcagtctggctgcaaagtcacacctgggctccactca----------ccagccgtgtggcc----------ttgggccccgtg-ccct-------ctctgggcctcTGCA------T---GCATAGAGGGGCTA
i dasNov3.JH579681               C 0 C 0
e panTro5.chr15                   59832338  58 +  83230942 I

a score=262208.000000
s hg38.chr15_KI270850v1_alt          42267 33 +    430880 ccaagccccatcctt---gcaTAAGTGAGGTCTGGG
s panPan2.chr15                   23068488 33 -  99763055 ccaagccccatcctt---gcataaatgaggtctggg
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            333570 33 -    378907 CCAAGCCCCATCCTT---GCATAAGTGAGGTCTGGG
i gorGor5.CYUI01015946v1         C 0 C 0
s rheMac8.chr7                    59999967 33 + 169600520 CCAAGCCCCATCCTT---CCATAAATGGGGTCTGGG
i rheMac8.chr7                   C 0 I 24
s macFas5.chr7                    61601231 33 + 171882078 CCAAGCCCCATCCTT---GCATAAATGAGGTCTGGA
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3924384 33 +   4820037 CCAAGCCCCATCCTT---GCATAAATGAAGTCTGGG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9786949 33 +  10730278 CCAAGCCCCATCCTT---GCATAAATGAAGTCTGGG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1328933 33 +  24206276 CCAAGCCCCATCCTT---GCATAAATGAGGTCTGGG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3928296 33 +   4030761 CCAAGCCCCATCCTT---GCATAAATGAAGTCTGGG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4034218 33 +   5013933 ccaagccccatcctt---gcataaatgaagtctggg
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113755333 33 - 132174527 TCAATCACCATCCTT---GCCTAAATGAGGTCTGGG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   97282 33 -    125141 tcaagcaccatcctt---gcataaatgaggtctggg
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1            102544 33 +  11725426 TCAAGCACCATCCTT---GCATAAATGAGGTCTGGG
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            695955 33 +    730879 tcaagcaccatcctt---gcataaatgaggtctggg
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5791020 31 -  36342412 GTAACCCCCATGGCT---GCAGAATCAAGGTCTG--
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90197764 33 + 124595110 TCAATCCTTATTCTT---GTATTAGTGGGGTCTACC
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58221463 15 +  91889043 ---AGAGCCA----T---GCATAGG-----------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  856925 33 +   1727078 -ACACCCCCATTCTTGAGGCAGAGGTGGAGAGAG--
i dasNov3.JH579681               C 0 C 0
e nomLeu3.chr6_GL398151_2_random     15788 105 -     28805 I
e panTro5.chr15                   59832338 58 +  83230942 I

a score=185654.000000
s hg38.chr15_KI270850v1_alt          42300 37 +    430880 ----CATGAAGGGCACAGCACTGCGTGGGGATCCA-GGTGGT
s panPan2.chr15                   23068521 37 -  99763055 ----catgaagcacgcagcactgcgtgggcatcca-ggtggt
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            333603 37 -    378907 ----CATGAAGGGCGCAGCACTGCGTGGGGATCCA-GGTGGT
i gorGor5.CYUI01015946v1         C 0 C 0
s macFas5.chr7                    61601264 37 + 171882078 ----CATGAAGGGCCCAGCACTACGTGGGCATCCA-GGTGAT
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3924417 37 +   4820037 ----CATGAAGGGCCCAGCACTGCGTGGGCATCGA-GGGGAT
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9786982 37 +  10730278 ----CATGAAGGGCCCAGCACTGCGTGGGCATCGA-GGGGAT
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1328966 37 +  24206276 ----CATGAAGGGCCCAGCACTGCGTGGGCATCCA-GGTGAT
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3928329 37 +   4030761 ----CATGAAGGGCCCAGCACTGCGTGGGCATCGA-GGGGAT
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4034251 37 +   5013933 ----catgaagggcctagcactgcgtggGCATCGA-GGGGAT
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113755366 37 - 132174527 ----CACGAAGCATCCCGCACTGCGTGGGCGTCCA-GGTGGT
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   97315 37 -    125141 ----cacgaagccccccacactgcgtgggcatcca-ggtggt
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1            102577 38 +  11725426 ----CACGAAGCGCCCCACACTGCGTGGGCATCCAGGGTGGT
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            695988 37 +    730879 ----cacgaagcgccccacactgcgtgggcatcca-ggtggt
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5791051 23 -  36342412 ------TGTAGGACCCAGCACTGCATGGG-------------
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90197797 26 + 124595110 ----GGTGAAAGGCTCAGTATTGCCCGTGA------------
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58221478 21 +  91889043 -------GAGGGG---------GCGGGGAGAGCTA-AA----
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  856958 41 +   1727078 CATGAGTGAAGGGCTTGGCATTGCAAGAGCCCCCC-AGATGT
i dasNov3.JH579681               C 0 C 0
e rheMac8.chr7                    60000000 24 + 169600520 I
e nomLeu3.chr6_GL398151_2_random     15788 105 -     28805 I
e panTro5.chr15                   59832338 58 +  83230942 I

a score=218094.000000
s hg38.chr15_KI270850v1_alt          42337 31 +    430880 GCTCAGGGAAGGCGGCTTTTTCCCCTCCCGC
s panPan2.chr15                   23068558 31 -  99763055 gctcaGGGAAGGCGGCTTTTTCCCCTCCCCC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            333640 31 -    378907 GCTCAGGGAAGGCGGCTTTTTCCCCTCCCCC
i gorGor5.CYUI01015946v1         C 0 C 0
s rheMac8.chr7                    60000024 31 + 169600520 GCTCAGGAAAGGTGACTTTTTCCTCTCCCCG
i rheMac8.chr7                   I 24 C 0
s macFas5.chr7                    61601301 31 + 171882078 ACTCAGGGAAGGCGGCTTTTTCCCCTCCCCC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3924454 31 +   4820037 ACTCAGGCAAAGCGGCTTCTTCCCCTCTGCC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9787019 31 +  10730278 ACTCAGGCAAAGCGGCTTCTTCCCCTCTGCC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1329003 31 +  24206276 ACTCAGGGAAGGCGGCTTTTTCCCCTCCCCC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3928366 31 +   4030761 ACTCAGGCAAAGCGGCTTCTTCCCCTCTGCC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4034288 31 +   5013933 ACTCAGGGAAAGCAACTTTTTCCCCTGTGCC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113755403 31 - 132174527 ACTCAGGGAAGGCGGCTTTTTCCCCTTCCCC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   97352 31 -    125141 gctcagggaaggcggctttTTCCCCTTCCCC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1            102615 31 +  11725426 GCTCAGGGAAGGCGGCTTTTTCCCCTTCCCC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            696025 31 +    730879 gctcagggaaggtggctttTTCCCCTTCCCC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5791074 10 -  36342412 ---------------------CACCTCCCTC
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90197823 27 + 124595110 ----AGGCTAGGCCGCTTTACCCCCTCCCTC
i mm10.chr9                      C 0 I 9
s canFam3.chr3                    58221499  2 +  91889043 --------------GC---------------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  856999 29 +   1727078 GCTCAGGAAAGGCTGGCTGCTTCCCTCCC--
i dasNov3.JH579681               C 0 C 0
e nomLeu3.chr6_GL398151_2_random     15788 105 -     28805 I
e panTro5.chr15                   59832338 58 +  83230942 I

a score=1071222.000000
s hg38.chr15_KI270850v1_alt          42368 139 +    430880 AAAGCCACTGTCATCCCCCATTGCAAGGTCAGGGAGAGGGCCTGGGGCTG----ACCC-TGCCAGTCTAAGGAATCCAGGAGCT---GTG------GCCTGAAGAGCTGCGGCCCC-TGTGC--TATTGGCTGTCTGCCCCCTGACCCTAGGACAG
s panPan2.chr15                   23068589 139 -  99763055 ACAGCCACTGTCATCCCCAATTGCAAGGTCAGGGAGAGGGCCTGGGGCTG----ACCC-TGCCAGTCTAAGGAATCCAGAAGCC---GTG------GCGTGAAGAGCTGTGTCCCC-TGTGC--TATTGGCTGTCTGCTCCCTGCCCCTAGGACAG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            333671 138 -    378907 AAAGCCACTGTCATCCCCAATTGCAAGGTCAGGGAGAGGGCCTGGGGCTG----ACCC-TG-CAGTCTAAGGAATCCAGGAGCT---GTG------GCCTGAAGAGCTGCGGCCCC-TGTGC--TATTGGCTGTCTGCCCCCTGACCCTAGGACAG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     15893 139 -     28805 AAAGCCACTGTCATCCCCAGTTGCAAGGTCGGGGAGAGGGCCTGGGGCTG----ACCC-TGGCAGTCTAAGGAATCCAGAAGCT---GTG------GCGTGAAGAGCTGCGTCCCC-TGTGC--TATTGGCTGTCTGCTCCCTGACCCTAGGACAG
i nomLeu3.chr6_GL398151_2_random I 105 C 0
s rheMac8.chr7                    60000055 143 + 169600520 AAAGCCACTGTCATCCCCAATTGCAAGGTCAGGGAGAGGGCCTGGGACCGCCCCCCCC-TGCCAATCTAAGGAATCCAGAAGCT---GTG------GTATGAGGAGCTTCGGCACC-TGTGC--TATTGACTGTCTGCTCTCTGCCCCTAGGACAG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61601332 139 + 171882078 AAAGTCACTGTCATCCCCAATTGCAAGGTCAGGGAGAGGGCCTGGGACCG----ACCC-TGACAATCTAAGGAATCCAGAAGCT---GTG------GTGTGAGGAGCTGCGGCCCC-TGTCC--TATTGACTATCTACTCTCTGCCCCTAGGACAG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3924485 139 +   4820037 AAAGCCACTGTCATCCCCAATTGCAAGGTCAGGGAGAGGGCCTGGGGCCA----ACCC-TGCCAGTCTAAGGAATCCAGAAGCT---GTG------GTGTGAGGAGCTGCGGCCCC-TGTGC--TATTGGCTGTCTGCTCCCTACTCCTAGGACAG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9787050 139 +  10730278 AAAGCCACTGTCATCCCCAATTGCAAGGTCAGGGAGAGGGCCTGGGGTCA----ACCC-TGCCAGTCTAAGGAATCCAGAAGCT---GTG------GTGTGAGGAGCTGCGGCCCC-TGTGC--TATTGGCTGTCTGCTCCCTACTCCTAGGACAG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1329034 139 +  24206276 AAAGTCACTGTCATCCCCAATTGCAAGGTCAGGGAGAGGGCCTGGGACCG----ACCC-TGACAATCTAAGGAATCCAGAAGCT---GTG------GTGTGAGGAGCTGCGGCCCC-TGTGC--TATTGACTGTCTACTCTCTGCCCCTAGGACAG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3928397 139 +   4030761 AAAGCCACTGTCATCCCCAATTGCAAGGTCAGGGAGAGGGCCTGGGGCCA----ACCC-TGCCAGTCTAAGGAATCCAGAAGCT---GTG------GTGTGAGGAGCTGTGGCCCC-TGTGC--TATTGGCTGTCTGCTCCCTACCCCTAGGACAG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4034319 139 +   5013933 AAAGTCACTGTCATCCCCAATTGCAAGGTCAGGGAGAGGGGCTGGGGCCA----GCCC-TGCCAGTCTAAGGAATCCAGAAGCT---GTG------GCGTGAGGAGCTGTGGCCCC-TGTGC--TATTGGCTGTCTGCTCCCTACCCCTAGGACAG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113755434 140 - 132174527 AAAGCCACTGTCATCCCCAATTGCAAGGTCAGGAAGAGGGCCTGGGTCTG----CCCC-TGGAAGTCTAGGGCACCCAGAAGCT---GTG------GTGGGAAGAGCTGTGGCCCCCTGTAC--TATTGGCTATCTGCCCCCTGCCCCTTGGACAG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   97383 140 -    125141 AAAGCCATTGTCATCCCCAATTGCAAGGTCAGGAAGAGGGCCTGGGGCCG----CCCC-TGGCAGTCTAGGGCACCCAGAAGCT---GTG------GTGGGAAGAGGTGCAACCCCTCATGC--TAATGGCTGTCTGCCCCGTCCCCCTTGGACAG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1            102646 139 +  11725426 AAAGCCACTGTCATCCCC-ATTGCTAGGTCAGGAAGAGGGCCTGGGGCCG----CCCC-TGGCTGTCTAGGGCACCCAGAAGCT---GTG------GCAGGAAGAGCTGTGGCCCCCTGTGC--TAATGGCCGTCTGCCCCCTGCCCCTTGGATGG
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            696056 107 +    730879 AAAGCCACTGTCGTCCCCAGTTGCAAAATCAGGAAGAGGGCCTGGG-----------------------------------------GTG------GCGGGAAGAGCTTCAGCCCCCTGTGC--CAATGGCTGTCTGCCTCCTGCCCCTTGGACAG
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5791084 110 -  36342412 ACAGTCACCACTGTCCCCCATCACACGGCTGG----------------------CGTC-TTCTAGTCTAGGGTACCCAGCAGCT---CAGCACTGTGTGTGAAGAG--------CC-TGTCT--CCAGGGCCATCCGCCCCCTGCCC---------
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90197859 124 + 124595110 GCAGCCATTACTGTCTTCCATTGCAAAGGCATGGGGA--GTCTGAGGCCA----CCCCTTGACACCTGAGGGAACCTAAGAGCTTGCTTG------GCAT-----------------TTACC--TACTGGTTCTATGCAC-CTGTCCCCAGGACAG
i mm10.chr9                      I 9 I 18
s canFam3.chr3                    58221501  81 +  91889043 CAGGTCACTGTC---------------------------GACTGGGGTCA---------GG-------AAGGAGCCGAGCAGCTT--GTG---------------------------TGTG---TCTCAGCCATCTGCCCCGGGCCCCCAGGACAG
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  857028 127 +   1727078 ----CTGCCGTCACCCCCTGG-GAGAGGACAGGCAGAGTACCCAGGGC------ACCC-AG-CAGTGCAGGCTGATGGAGCACC---GCG------GTCTGGAGAGCAGCAGCTTA-GGTCCCTCCTCAGCTGTCTGC--CCTGTCCCAGAG----
i dasNov3.JH579681               C 0 C 0
e panTro5.chr15                   59832338  58 +  83230942 I

a score=390360.000000
s hg38.chr15_KI270850v1_alt          42507 49 +    430880 AGTCCTCAGCCACGGCCCTCAAACTGGCATTCGGGGCCCCCTGCAGTCT-
s panPan2.chr15                   23068728 49 -  99763055 AGTCCTCAGCCAGGGCACTCACGCTGGCATTCAGGGCCCCCTGCAATCT-
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            333809 49 -    378907 AGTCCTCAGCCACAGCCCTCAAGCTGGCATTCGGGGCCCCCTGCAATCT-
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     16032 49 -     28805 AGTCCTCAGCCAGGGCCCTCAAGCTGGCATTCAGGGCCCCCTGCAATCT-
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    60000198 49 + 169600520 AGTCCTCAGCCAGGGCACTCAAGCTGGCATTCGGGGCCCCCTGCAATCT-
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61601471 49 + 171882078 AGGCCTCAGCCAGGGCACTCAAGCTGGCATTCGGGGCCCCCTGCAATCT-
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3924624 49 +   4820037 AGTCCTCAGCCAGGGCCCTCAAGCTGGCATTCGGGGCCCCCTGCAATCT-
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9787189 49 +  10730278 AGTCCTCAGCCAGGGCCCTCAAGCTGGCATTCGGGGCTCCCTGCAATCT-
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1329173 49 +  24206276 AGGCCTTAGCCAGGGCACTCAAGCTGGCATTCGGGGCCCCCTGCAATCT-
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3928536 49 +   4030761 AGTCCTCAGCCAGGGCCCTCAAGCTGGCATTTGGGGCCCCCTGCAATCT-
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4034458 48 +   5013933 AGTCCTCAGCCAGGGCCCTCAAGCTGGCATTCGGGGC-CCCTGCAATCT-
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113755574 49 - 132174527 AGTTGGCAGCCAGGGCACTCAGGCTGGCATTCGGGGCCCCCTGCAGTCT-
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   97523 49 -    125141 AGTTGGCAGCCAGGGCACTCAAGCTGGCATTCGGGGCCCCCTGCTGTCT-
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1            102785 49 +  11725426 AGTTGGCAGCCAGGGCACTCGGGCTGGCATTCGGGGCCCCCTGCAGTCT-
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            696163 49 +    730879 AGTTGGCAGCCAGGGCACTCAGGCTGGCATTTGGGGCCCCCTGCAGTCT-
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5791194  6 -  36342412 --------------------------------------GCCTGC------
i otoGar3.GL873530               C 0 C 0
s canFam3.chr3                    58221582 37 +  91889043 --------TCTGTGGTCCTTGGGCTGGCGGTCAGCGCCTCGGGGA-----
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  857155 41 +   1727078 --------AATATGCCCATCAGGCTGGCAGGCAGGGC-TGCTGGGATCTG
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90197983 18 + 124595110 I
e panTro5.chr15                   59832338 58 +  83230942 I

a score=5668722.000000
s hg38.chr15_KI270850v1_alt          42556 710 +    430880 CCCCAGTCTGCCTTCTCCCCTTATCCAATGC-GCCTTCTCTACCTGC-GCTGGCTCCTGGGCAGCCCTCATTTGGGCTCAGAGTGG-CCCCTGCCATGCCTCGCTGCCATGCCTTGCTACCCTGCCTCTGGCAGGGGTGGCCTTCCTGCCACAAACCCCATTACCTCAAGGCCAAGTGGCAGTGCC-CCCACCCTG-TCCTGCCTGCCCTCAGcac---------------------gcacccagc-cagcatctcagagcactcctgtgtgctgcctgagctgggtgctggca----tca---caTCTCTCGC-CT----------TCATGGCT---AGAGCTGGCCA------------------------------------CAGGGAGTGGGGTGGTTAT-GATCCCA----GGGGATGAGGACCA--GATGGAGCAGAGAACAGGAACTGAGGCCCCTGGGGGCCTAGAACCAAGGACAGA--TGGCCCAGGAGGCTCTGGGCTTGTAAGGTCTCCCAGGGGCG-GGTATGAG-TGGGCT--GCAGGGAGTGGGCTATGGGGGCTGGTTAGGTGGCTGAACTAGAAGCTGTCCTAAGTGAGGAGTTTTCTGCCACC-----------AGTGAACAGTGGAGGGGCAGCTGGGAAGGTGTCTTGGACTTTGAG-AC-CTGGAATTCCCAGGATGTTTTGCTGGTCTGTGGGACAGT-T-GGCGGG-ACGG--G-GGAAAGCCAGGAAACTCCAGAGTGTGCG----GTCGCTGCAG---------TGACACAGCATG---GC-CACATC------CATT-TGCTGT-GGAGGTGGG----G----ttgacagagg
s panPan2.chr15                   23068777 695 -  99763055 CCCCGGTCTGCCTTCTCCCCTTGTCCAACGCTGCCTTCTCTACCTGT-GCCAGCTCCTGGACAGCCCTCATTCAGGCTCAGAGTGG-CCCCTGCCATGCCTCGCT-------------ACCTTGCCTCTGGCAGGGGTGGCCTTCCTGCCTCAAACCCCATTACCTCAAGGTCCAGTGGCAGTGCC-CCCACCCTG-TCCTGCCTGTCCTCAGA-----------------------GCACCCAGC-CAGCATCTCAGAGCACTCCTATGTGCTGCCTGAGCTGGGTGCTGGCA----CCA---CGTCTCTCAC-CT----------TCATGGCT---AGGGCTGGCCA------------------------------------CAGGGAGCGGGGTGGTTAT-GATCCCA----GTGGGGGAGGACCA--GATGGGGCAGAGAACAGAAACTGAGGCCCCTGGGGGCCTAGAACCAAGGACGGA--TGGCCCAGGAGGCTCTGGGCTTGCAAGGTCTCCCAGGGGCA-GGTGTGAG-TGGGCT--GCAAGGAGTGGGCTATGGGGGCTGGTTAGGTGGCTGAACTAGAAGCTGTCCTAAGTGAGGAGTTATCTGCCATC-----------AGTGAACAGTGGAGGGG-GGCTGGGAAGGTGTCTTGGACTTGGAG-AC-CTGGAATTCCCAG-ATGTTCTGCTGGTCTGTGGGACAGT-T-GGCGGG-ACAT--GTGGAAAGCCGGGAAACGCGTGTGTGTGTG----CTCACTGCAG---------TGACACAGCATG---GC-CACATC------CATT-TGCTGT-GGAGGTGGG----G----ttgacagagg
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            333858 708 -    378907 CCCCAGTCTGCCTTCT-CCCTTGTCCAATGCAGCCTTCTCTACCTGC-GCTGGCTCCTGGGCAGCCCTCATTTGGGCTCAGAGTGG-CCCCTGCCATGCCTCGCTGCCATGCCTTGCTACCCTGCCTCTGGCAGGGGTGGCCTTCCTGCCACAAACCCCGTTACCTCAAGGCCAAGTGGCAGTG-C-CCCACCCTG-TCCTGCCTGCCCTCAGCAC---------------------GCACCCAGC-CAGCATCTCAGAGCACTCCTGTGTGCTGCCTGAGCTGGGTGCTGGCA----TCA---CATCTCTCGC-CT----------TCATGGCT---GGAGCTGGCCA------------------------------------CAGGGAGTGGGGTGGTTAT-GATCCCA----GGGGATGAGGACCA--GATGG-GCAGAGAACAGGAACTGAGGCCCCTGGGGGCCTAGAACCAAGGACAGA--TGGCCCAGGAGGCTCTGGGCTTGCAAGGTCTCCCAGGGGCG-GGTATGAG-TGGGCT--GCAGGGAGTGGGCTATGGGGGCTGGTTAGGTGGCTGAACTAGAAGCTGTCCCAAGTGAGGAGTTTTCTGCCACC-----------AGTGAACAGTGGAGGGGCAGCTGGGAAGGTGTCTTGGACTTTGAG-AC-CTGGAATTCCCAGGATGTTTTGCTGGTCTGTGGGACAGT-T-GGCAGG-ACGG--G-GGAAAGCCGGGAAACTCCAGAGTGTGCG----GTCGCTGCAG---------TGACACAGCATG---GC-CACATC------CGTT-TGCTGT-GGAGGTGGG----G----ttgacagagg
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     16081 695 -     28805 CCCCGGTCTGCCTTCTCCCCTTGTCCAATGCAGCGATCTCTACCTGC-GCCAGCCCCTGGGCAGCCCTCATTCAGGCTCAGAGTGGCCCCCTGCCATGCCTTGCT-------------ACCCTGCCTTTGGCATGGGTGGCCTTCCTGCCTCAAACCCCATTACCTCAAGGCCCAGTGGCAGTGCC-CCCACCCTG-TCCTGCCTGTCCTCAGCAC---------------------ACACCCAGC-CAGCATCTCAGAGCACTTCTGTGTGCCTCCTGAGCTGGGTGCTGG-------CA---CGTCTCTCAC-CT----------TCATGGCT---AGGGCTGGCCA------------------------------------CAGGGAGCGGGGTGGTTAT-GATCCCAGGGCGGGGTTGAGGACCA--GATGGGGCAGAGAACAGGAACTGAGGCCCCTGGGGGCCTAGAACCAAGGACCGA--TGGCCCAGGAGGCTCTGGGCTTGCAAGGTCTCCCAGAGGCA-GGTGTGAG-TGGGCT--GCAGGGAGTGGGCTATGGGGGCTGGTTTGGTGGCTGAACTAGAAGCTGTCCTAAGTGAGGAGTTTTCTGCCACC-----------AGTGAACAGTGGAGGGGCGGCTGGGGAGGTATCTTGGACTTGGAG-AC-CTGGAATTCCCAG-ATGTTCTGTTGGTCTGTGGGACAGT-T-GGCGGG-ACAT--GTGGAAAGCCGGGAAACTC--GTGTGTGTG----CTCACTGCAG---------TGACACAGCATG---CT-CATATC------CGTT-TGCTGT-GGAGGTGGG----G----TTGACA---g
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    60000247 698 + 169600520 CTCCAGTCTGCCTTCTCCCCTTGTCCAACGCAGACTTCTCTACCTGT-GCTGGCTCCTGGGCAGCCCTCATTCGGGCTCAGCGTGG-CCCCCGCCATGCCTCGCT-------------ACCCTGCATCTGGCAAGGGTGGCCTTCCTGCCTCAAACTCCACTACCTCAAGGCCCAGTGGCAGTGCC-CCCACCCTG-TCCTGCCTGCCTTCAGcat---------------------gcacccagc-cagcatctcagagcacttctgtgtgctgcctgagctgggtgctggCA----CCA---TGTCTCTCAC-CT----------TCAGGGCT---AGGGT-----------------------------------------------GGTGGGGTGGTTAT-GATCCCT----GGGGGTGAGGACCA--GATGGGGCAGAGAACAGGAACTGAAGCACCTGGGGGCCTAGAACCAAGGACGGA--TGGCCCAGGAGGCTCTGGGCTTGCAAGGTCTCCCAGGGGCG-GGTGTGAG-TGGGCT--GCAGGGAGTGGGCTATGGGGGCTGGTTAGGTGGCTGAACTAGAAGCTGTCCTATGTGAGGAGTTTTCTGCCACC-----------AGTGAACAGTGGAGGGGCGGCTGGGAAGGTGTCTTGGACTTTGAG-AC-CCGGAATTCCCAGGATGTCCTGCTGGTCTGTGGGACAGG-T-GGTGGGAACATTGGTGGAAAGCCGGGAAACTCCAGAGTGTGCGGGTTGTCGCTGCAG---------TGACACAGCATGGGCGC-CACATC------TGTT-TGCTGT-GGAGGTGGG----G----TTGACAGACC
i rheMac8.chr7                   C 0 I 20
s macFas5.chr7                    61601520 679 + 171882078 CCCCGGTCTGCCTTCTCCCCTTGTCCAATACAGACTTCTCTACCTGT-GCTGGCTCCTGGGCAGCCCTCATTCGGGCTCAGAGTGG-CCCCTGCCATGCCTCGCT-------------ACCCTGCCTCTGGCAAGGGTGGCCTTCCTGCCTCAAACTCCATTATCTCA---------GGCAGCACA-CCCACCCTG-TCCTGCCTGCCCTCAGCAT---------------------GCACCCAGC-CAGCATCTCAGAGCACTCCTGTGTGTCTCCTAAGCTGGGTGCTGGCA----CCA---TGTCTCTCAC-CT----------TCAGGGCC---AGGGT-----------------------------------------------GGTGGGGTGGTTAT-GATCCCT----GGGGGCGAGGACCA--GATGGGGCAGAGAACAGGAACTGAGGCCCCTGGGGGCCTAGAACCAAGGACGGA--TGGCCCAGGAGGCTCTGGGCTTGCAAGGTCTCCCAGGGGTG-GGTGTGAG-TGGGCT--GCAGGGAGTGGGCTATGGGGACTGGTTAGGTGGCTGAACTAGAAGCTGTCCTAAGTGAGGAGTTTTCTGCCACC-----------AGTGAACAGTGGAGGGGCGGCTGGGAAGGTGTCTTGGACTTTGAG-AC-CCGGAATTCCCAGGATGTCCTGCTGGTCTGTGGGACAGT-T-GGCAGG-ACAT--GTGGAAAGCCGGGAAACTCCAGAGTGTGTG----GTCGCTGCAG---------TGACACAGCATG---GC-CACATC------CGTT-TGCTGT-GGAGGTGAG----G----ttgacagagg
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3924673 691 +   4820037 CCCTGGTCTGCCTTCTCCCCTTGTCCAATACAGCCTTCTCTATCTGC-ACTGGCTCCTGGGCAGCCCTCATTCAGGCTCAGAGTGG-CCCCTGCCATGCCTCGTT-------------ACCCTGCCTCTGGCAGGGGTGGCCTTCCTGCCTCAAACCTCAAGGCCCAG--------TGGCAGTGCC-CCCACCCTG-TCCTGCCTGCCCTCAGCAT---------------------GCACCTAGC-CAGCATCTCAGAGTGCTCCTGTGTGTCGCCTAAGCTGGGTGCTGGCA----CCA---TGTCTCTCAC-CT----------TCAGGGTT---AGGGCTGGCCA------------------------------------GAGGGAGCAGGGTGGTTAT-GACCCCC----AGGGATGAGGACCA--GATAGGGTAGAGAACAGGAACTGAGGCGCCTGGCAGCCTAGAACCAAGGATGGA--TGGCCCAGGAGGCTCTGGGCTTGCAAGGTCTCCCAGGGGCG-GGTGTGAG-TGGGCT--GCAGGGAGTGGGCTATGGGGGCTGGTTAGGTGGCTGAACTAGAAGCTGTCCTAAGTGAGGAGTTTTCTGCCACC-----------AGTGAACAGTGGAGGGGTGGCTGGGAAGGTATCTTGGACTTCCAG-AC-CTGGAATTCCCAGGATGTTTTGCTGGTCTGTGGGACAGT-T-GGCGGG-ACAT--GTGGAAAGCCGGGAAACTGGTGTGTGTGTG----GTCATTGCAA---------TGACACAGCATG---GC-CACATC------CGTT-TGCTGT-GGAGGTGGG----G----ttgacagagg
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9787238 691 +  10730278 CCCCAGTCTGCCTTCTCCCCTTGTCCAATACAGCCTTCTCTATCTGC-ACTGGCTCCTGGGCAGCCCTCATTCGGGCTCAGAGTGG-CCCCTGCCATGCCTCGTT-------------ACCCTGCCTCTGGCAGGGGTGGCCTTCCTGCCTCAAACCTCAAGGCCCAG--------TGGCAGTGCC-CCCACCCTG-TCCTGCCTGCCCTCAGCAT---------------------GCACCTAGC-CAGCATCTCAGAGTGCTCCTGTGTGTCGCCTAAGCTGGGTGCTGGCA----CCA---TGTCTCTCAC-CT----------TCAGGGTT---AGGGCTGGCCA------------------------------------GAGGGAACAGGGTGGTTAT-GATCCCC----GGGGATGAGGACCA--GATGGGGCAGAGAACAGGAACTGAGGCGCCTGGCGGCCTAGAACCAAGGACGGA--TGGCCCAGGAGGCTCTGGGCCTGCAAAGTCTCCCAGGGGCG-GGTGTGAG-TGGGCT--GCAGGGAGTGGGCAACGGGGGCTGGTTAGGTGGCTGAACTAGAAGCTGTCCTAAGTGAGGAGTTTTCTGCCACC-----------AGTGAACAGTGGAGGGGCGGCTGGGAAGGTATCTTGGACTTCCAG-AC-CTGGAATTCCCAGGATGTTTTGCTGATCTGTGGGACAGT-T-GGCGGG-ACAT--GTGGAAAGCCGGGAAACTGGTGTGTGTGTG----GTCACTGCAA---------TGACACAGCATG---GC-CACATC------CGTT-TGCTGT-GGAGGTGGG----G----ttgacagagg
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1329222 679 +  24206276 CCCCGGTCTGCCTTCTCCCCTTGTCCAATACAGCCTTCTCTATCTGC-ACTGGCTCCTGGGCAGCCCTCATTCGGGCTCAGAGTGG-CCCCTGCCATGCCTCGCT-------------ACCCTGCCTCTGGCAAGGGTGGCCTTCCTGCCTCAAACTCCATTATCTCA---------GGCAGCACA-CCCACCCTG-TCCTGCCTGCCCTCAGCAT---------------------GCACCCAGC-CAGCATCTCAGAGCACTCCTGTGTGTCTCCTAAGCTGGGTGCTGGTG----CCG---TGTCTCTCAC-TT----------TCAG-------------GGCCA-------------------------------------AGGTGGTGGGGTGGTTAT-GATCCCT----GGGGGTGAGGACCA--GATGGGGCAGAGAACAGGAACTGAAGCACCTGGGGGCCTAGAACCAAGGACGGA--TGGCCCAGGAGGCTCTGGGCTTGCAAGGTCTCCCAGGGGTG-GGTGTGAG-TGGGCT--GCAGGGAGTGGGCAACGGGGGCTGGTTAGGTGGCTGAACTAGAAGTTGTCCTAAGTGAGGAGTTTTCTGCCACC-----------AGTGAACAGTGGAGGGGCGGCTGGGAAGGTGTCTTGGACTTTGAG-AC-CCGGAATTCCCAGGATGTCCTGCTGGTCTGTGGGACAGT-T-GGCAGG-ACAT--GTGGAAAGCCGGGAAACTCCAGAGTGTGTG----GTCGCTGCAG---------TGACACAGCATG---GC-CACATC------CGTT-TGCTGT-GGAGGTGGG----G----ttgacagagg
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3928585 699 +   4030761 CCCTGGTCTGCCTTCTCCCCTTGTCCAATACAGCCTTCTCTATCTGC-ACTAGCTCCTGGGCAGCCCTCATTCAGGCTCAGAGTGG-CCCCTGCCATGCCTCGCT-------------ACCCTGCCTCTGGCAGGGGTGGCCTTCCTGCCTCAAACCGCATTACCTCAAGGCCCAGTGGCAGTGCC-CCCACCCTG-TCCTGCCTGCCCTCAGCAT---------------------GCACCTAGC-CAGCATCTCAGAGTGCTCCTGTGTGTCGCCTAAGCTGGGTGCTGGCA----CCA---TGTCTCTCAC-CT----------TCAGCGTT---AGGGCTGGCCA------------------------------------GAGGGAGCAGGGTGGTTAT-GATCCCC----GGGGATGAGGACCA--GATGGGGCAGAGAACAGGAACTGAGGCGCCTGGCGGCCTAGAACCAAGGACGGA--TGGCCCAGGAGGCTCTGGGCCTGCAAAGTCTCCCAGGGGCG-GGTGTGAG-TGGGCT--GCAGGGAGTGGGCAACGGGGGCTGGTTAGGTGGCTGAACTAGAAGCTGTCCTAAGTGAGGAGTTTTCTGCCACC-----------AGTGAACAGTGGAGGGGCGGCTGGGAAGGTATCTTGGACTTCCAG-AC-CTGGAATTCCCAGGATGTTTTGCTGGTCTGTGGGACAGT-T-GGCGGG-ACAT--GTGGAAAGCCGGGAAACTGGTGTGTGTGTG----GTCACTGCAA---------TGACACAGCATG---GC-CACATC------CGTT-TGTTGT-GGAGGTGGG----G----ttgacagagg
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4034506 698 +   5013933 CCCCGGTCTGCCTTCTCCCCTCGTTCAATACAGCCTTCTCTAT-TGC-ACTGGCTCCTGGGCAGCCTTCATTCAGGCTCAGAGCGG-CCCCTGCCATGCCTCACT-------------ACCCTGCCTCTGGCAGGGGTGGCCTTCCTGCTTCAAACCGCATTACCTCAAGGCCCAGTGGCAGTGCC-CCCACCCTG-TCCTGCCTGCCCTCAGCAT---------------------GCACCTAGC-CAGCATCTCAGAGTGCTCCTGTGTGTCGCCTAAGCTGGGTGCTGGCA----CCA---TGTCTCTCAC-CT----------TCAGGGTT---AGGGCTGGCCA------------------------------------GAGGGAGCAGGGTGGTTAT-GATCCCC----GGGGATGAGGACCA--GATGGGGCAGAGAACAGGAACTGAGGCACCTGGGGGCCTAGAACCAAGGACGGA--TGGCCCAGGAGGCTCTGGGCTTGCAAGGTGTCCCAGGGGTG-GGTGTGAG-TGAGCT--GCAGGGAGTGGGCTATGGGGACTGGTTAGGTGGCTGAACTAGAAGCTGTCCTAAGTGAGGAGTTTTCTGCCACC-----------AGTGAACAGTGGAGGGGCGGCTGGGAAGGTATCTTGGACTTCCAG-AC-CTGGAATTCCCAGGATGTTTTGCTGGTCTGTGGGACAGT-T-GGCGGG-ACAT--GTGGAAAGCCGGGAAACCGGGGTGTGTGTG----ATCACTGCAA---------TGACCCAGCATG---GC-CACATC------CGTT-TGCTGT-GGAGGTGGG----G----TTGCcagagg
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113755623 675 - 132174527 CCCGGGTCTGCC-TCTCCCCTTGTCTTGCGTAGTCTTCTCTATCT-------GCTCCTGAACAGCCCTCATTCAGGCTCAGAGTGG-CCCCTGCCATGCCTCACT-------------ACCCTGCCTCTGACAGGGGTGGCCTTCCTGCCTCAAATTCCATTACCTCAAGGCCCAGAGGTAGTGCC-CCCACTTTG-CCCTGCCTGTCCTCAGCAC---------------------GCACCGAGC-CAGCATCTGGGAGCACTCCTGTGTGCCGCCTGAGCTGGGTGCTGGCA----TCA---CATCTCTTGC-TG----------TCAGGGCT---AG-GCTGGCTA------------------------------------CAGGGAAA-AGGTGGTTAC-CATCCCA----GTTGGTGAGGACCA--GATGGGGCAGAGAATGGGAATTGAGGTGCCTGGGGGCCCAGAACCAGGGAC-AA--TGGCCCACGAGGCCCTGGGCTTGCAGGGTCT-CCAGGGGTG-GGTGTGAG-TGGG-T--AGAGGGAGT--------GGGGCTGCTTAGGTGGCTGAACTAGAAGCTGTCTTAAGT---GAGTTTTCGGTGGCC-----------AGTGAACAGTGGAGGGGAAGA-AGGAAGGTGTCTTGCACCTTGAG-AC-CTGGAGTTCCCAGGATGTTTTGCTGGTCTGTGGGATAGT-G-TGGTGG-ATAT--TTGGAAAGCCTGGAATCTCCAGAGTGTGTG----GTCACTGCAG---------TGACCCAGCATG---GC-TGCATC------CGTT-TGCTGC-AGAGGCGGG----G----CTGacaaagg
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   97572 675 -    125141 CCCGGGTCTGCC-TCTCCCCTTGTCTAGCGTAGCCTTCTCTATCT-------GCTCCTGGACAGCCCTCATTCAGGCTCAGAGTGG-CCCCTGCCATGCATCAAT-------------ACCCTGCCTCTGGCAGGGGTGGCCTTCCTGCCTCAAATCCCATTACCTCAAGGCCCAGAGGCAGTGCC-CCCACCCTG-CCCTGCCTGTCCTCAGCAC---------------------ACACCGAGC-CAGCATCTCAGAGCGCTCCTGTGTACCGCCTGAGCTGGCTGCTGGCA----TCA---CATCTCTTGCTTG----------TCAGGGCT---AG-GCTGGCTA------------------------------------CAGGGAGC-AGGCGGTTAC-CATCCCA----GATGGTGAGGACCA--GATGGGGCAGAGAACAGGAACTGAGGCGCTTGGGGGCCCAGAACCAGGGAC-GA--TGGCCCACAAGGCTCTGGGCTTGCAGGGTCT-CCAGGGCTG-GGTGTGAG-TGGG-T--GGAGGGAGC--------GGGACTGCTTAGGTGGCTGAACTAGAAGCTGTCTGAAGT---GAGTTTTCAGCTGCC-----------AGTGGACAGTGGAGGGGAAGC-AGGAAGGTCTCTTGCACCTTGAG-AC-TTGGAATTCCCAGGATGTTTTGCTGGTATGTGGGACAGT-G-TGGCGG-ATAT--TTGGAAAGCCTGGAAACTCCAGAGTGTGTG----GTCACTGCAA---------TGACCCAGCATG---GC--GCATC------CGTT-TGCTGC-AGAGGTGGG----G----ttgacagagg
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1            102834 672 +  11725426 CCCGGGTCTGCC-TCTCCCCTTGTCTAGTGTAGCCTTCTCTATCT-------GCTCCTGGACAACCCTCGTTCAGGCTCAGAGTGG-CCCCTGCCATGCCTCGCT-------------ACCCTGCCTCTGGCAGGGGTGGCCTTCCTGCCTCAAATTCCATTACCTCAAGGCCCAGAGGCAGTGCC-CCCAC-GTG-CCCTGCCCGTCCTCAGCAC---------------------GCACTCAGC-CAGCGTCTCAGAGCGCTCCTGTGTGCTGCCTGAGCTGGCTATTGGCA----TCT---CATCTCTTGC-TG----------TCAGGGCT---AG-GCTGGCTA------------------------------------CAGGGAGT-GGGT-GTTAC-CATCCCA----GGTGGTGAGGACCA--GATGGGGCAGGGAACAGGAACTGAGATGCCTGGGGGCCCAGAACCAGGGAT-GA--TGGCTCATGAGGCTCTGGGCTTGTAGGGTCT-CCAGgggtg-ggtgtgag-tggg-t--ggagggagc--------ggggctgcttgggtggctgAACTGGAAGCTGTCTTAAGT---GAGTTTTCGGCTGCC-----------AGTGAACAGTGGAGGGGAAGC-AGGAAGGTGTCTTGCACCTTGAG-AC-CTGGAATTCCCA-GATGTTTTGCTGGTGTGTGGGACAGT-G-TGGTGG-ATAT--TTGGAAAGCCTGGAAACTCCAGAGTGTGTG----GTCACTGCAA---------TGACCCAGCATG---GC-CGCATC------CGTT-TGCTGC-GGAGGTGGG----G----ttgacagagg
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            696212 671 +    730879 CCCGGGTCTGCC-TCTCCCTTTGTCTAGCGTAGCTTTCTCTATCT-------GCTCCTGAACAGCCCTCA------CTCAGAGTGG-CTCCTGCCGTGCCTTGCT-------------GCCCTGCCTCTGGCAGGGGTGGCCTTTCTGCCTTGAACCCCATTACCTCAAGGCCCAGAGCCAGTGCC-CCCGCCCTG-CCCTGCCCGTCCTCAGCAC---------------------ACACCCAGC-CAGCATCTCAGAGCGCTCCTGTGTGCCGCCTGAGCTGGGTGCTGGCA----TCACATCATCTCTTGC-TG----------TCAGGGCT---AG-GCTGGCTA------------------------------------CAGGGAGC-GGGTGGTTAC-CATCCCA----GGTGGTGAGGACCA--GATGGGGCAGAGAACAGGAACTGGGGCGCCTGGGGGCCCAGAACCAGGGAC-GA--TGGCCCACGAGGCTCTGGGCTTGCAGGGTCT-CCAGGGGTG-GGTGTGAG-TGGG-T--GGAGGGAGT--------GGGGCTGCTTAGGCAGCTGAACTAGAAGCTGTCTT-AGT---GAGTTTTCTGCTGCC-----------AGTGAACAGTGGAGGGGAGGC-AGGAAGGTGTCTTGCCCCTTGAG-AC-CTGGAATTCCCAGGATGTTTTGCTGGTGTGTGGGACAGT-G-TGGCGG-ATAT--TTGGAAAGCCTGGAAACTCCAGAGTGTGTG----GTCACTGCAA---------TGGCCCAGCATG---GC-CGCATC------CGTT-TGCTGC-GGAGGTGGG----G----ttgacagagg
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5791200 591 -  36342412 -------CCGCC-CATCCTCTTGCCCT-CACAGTGTTCTCT-CCTAC-AGCGGCT-CTGGGCAGCACTGGCTCAGGCCCAGAGTGG-CCAGTGCCACACCTTGTG-------------CCCCTGCCTC------------CCATCCTG------------TTACTTCAAGGCCTAGTGGAAATGCC-TCCACCCTG-CCCT-----------------------------------------------------------------------------------GGTGCTGGCC----CTA---CTGTTCTTGC-CT----------TCAAGGCT---GGGGCTT-------------------------------------------------GGGTAGTTACAGATCCAA----GGTGGTTAACACAGGTGGTGACGCCCAGAGCAGGAACTGAGGGTCCCCA-GGCCTAGAACAAAGGACAGACCTGGC-CAAGAGGCCCCGGGCCTCCAAAGACTCCCAGGGATG-GGGGTGGGCTGGGCT--ACAGGGAGGGCGTGTAGGGAGTTTG------GGCAGCACTATGAACTGTCCCCGGTGACAGGATTTCTGCCACT-----------GGTGAATGGT-GAAGGGCATCCGGGGAGGGGTCTTGGATCCTGAG-GCTCTGGAATTCCCAGAGTGTTTAGATGGTCTGTGGGACTGTGT-GGCAGG-ACAC--GTGCAAAGCTTGGAAACTCCAGGATGTGTG----GTCATCATGG---------CAGGGCAGC-TG-ACAC-AGCATC------CGCC-TGCCCTGGGAGGTGGG----G----TTATCAacag
i otoGar3.GL873530               C 0 I 1
s mm10.chr9                       90198001 696 + 124595110 CCCCGATCTGCT---TCTCCCTGCTCTGCACAGCCTTCACTACCAGCAGCTGGTTCCTGG-TGGTACTGGCTCAGGACCAGAGCAA-CTTCTGCTCTGCCATTCT-------------GCTCTG-----------------------------AATCCCATTGCCTCATGCCGGGGAGATGTTAAG-CCATCCCTG-CCTGTTTCTCTCTCATCATCTCCTTCCATTTTTCCCACAGACACTCAGCACAGCTAAGCTGGGTGCTATACCACAGTGCTTGCCTTTGGGGCTGATAATGTCTA---TGGCTCTCTT-CTGTTTCTCTCGTCAAGCTC---AGGGTTGGC---------------------------------------AGAGAATACGGTAGCTAT-GGTCCCA----GGTGGTG-----CA--GATAGGG-AGAGGGCAGGAATTCAGGCTCT-----------ATCCGAAATAGCG--TGGCTCAGGAGGCTGTGGGTTTGCAAGGTCTCCAAGAGGAATGGGAAGGG-TGGGCTTAGCAGGGACC------CAAAGCCTATCCATGTGAAGGGCCTCCCTGTGCCCCTACCC---GCCTTCCCAGCACCCTCCCCCTCTCAAGTAAA-----GGGAGCCAATCAGGGAAGACTCTAGGATCGCAAGTTC-CTGGAGCTTCCAGGATGTTTTGATGGTTTGTGGGATTGT-TCAACAGG-ACAT--TTGGAAATCCTGGAAACTCCAGGGTGTGTG----ATCACCGTGG---------CAAGGCAGCTCACATGC-CGGGTCATGTGACCTT-CCCCAG-GGAGGTGGGGGCTG----TTATCAAG--
i mm10.chr9                      I 18 C 0
s canFam3.chr3                    58221619 454 +  91889043 ------------------CCTCGCT-------GCCTTCTCCACAGTG-GCTGGCTCCTTGGCAGCCC-----------------AG-CCTCCTCCA----------------------ATCCTG------------------------------------TGGCCTCAGGGCCCAGTGGAGGTGCCACCCACCCTG-CCCCTGCCGCACACAGCCC--------------------------CGGC-CAGAGGCCGCCAAGGCTCCT-------------------------------TCC---TGCCTCTCAC-CT----------------------------------------------------------------------------------------GGGCTCG----GGGAGGGGGACCCA--TGGCGGGGAGAGGGTAG-----------------------------------AA--TGG------AGGCC-----------GGGTCT-CCGGAGGTC-GG-----G-TGGA-T--GGAGGGG---------------TGGTCAGGCGGCTGAGCCACCAGCCGACCCAAGTGAGGAGTT---------------------GGGG----GTGGAGGCCAGCTCGGG--GGTGACGTGGGCGCCAAG-AT-CCTGAAGCTCGGGGATGTTTTGATGGTTTGTG--------G-GGCAAG-ACGT--TTAGAAAGCCTGGAAACTCCAGGGCGTGCG----GTCAGCCCGGTGAGGCAGCTGACCTAGCGTG---GCCCACATC------CGTT-TG---T-GGAGGTGGGCGTTA----TTGACAG---
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  857196 656 +   1727078 CCCCAATTTGCCCTTTCCCCTTG---------GCCCTATCTCCCAGTGGCTGGCTCC-GGGCGTTCTTCACCCAAGC---AAGGTG-CTCATGGCAGA--------------------A-----------GCAGGGGTG-----CCTGCCTCAAATCCCCTTGTCTCCAGGCCCAGTGGAAATGCCACCTGCTCTGAGCCTGCCTGCCCTCCCCCT---------------------TCACTGGAC-GAGCATCTCTGGGCACAGC---------CCTGAGCTGGGTGCTGGCC----CCA---CCGCACTTGC-CT----------GGCAGGCTTCGGGGGTGGGCCACGGCTCCACTCTGCCCTCACTGGGGCTCAGGCTCGCCAGGGAGCTGGGCAATTAT-GGCCTCA----GGCAGCGAGGGCCA-----------GAGGGCGGGAACTGAGGCCCGTGGGATCTTGAATCAAGGAGAGGC--CTGCACAGGGGGCCCTGGACATACAAGGCCTCCCAGGAGTG-GG----GG-TGGGCC--AGAGGGAGGGGATGCGGTGGGATGCCGAGGCGGCTGGACT--------------------------------CC---------------------GAAGGGGCAGCTGGG-AGATGTCTTGGATACAGGG-ACCCTGGAACTTCCAGGATGTTTTCACGGTTTGTGGAGCTGTGT-GGAGGG-GCAC--TTGGAGAGCCTGGGAACTCCAGGGTGTGCG----GTCACCATGGTGCAGCTGCTGATACAGCATC---AC-CACATC------CGTTCTCCTGT-GGCGGTGGG----GTTTAtttatagagg
i dasNov3.JH579681               C 0 C 0
e panTro5.chr15                   59832338  58 +  83230942 I

a score=80806.000000
s hg38.chr15_KI270850v1_alt          43266 7 +    430880 agggaac
s panPan2.chr15                   23069472 7 -  99763055 agggaac
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            334566 7 -    378907 agggaac
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     16776 7 -     28805 agggaac
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61602199 7 + 171882078 agggagc
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3925364 7 +   4820037 agggaac
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9787929 7 +  10730278 agggaac
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1329901 7 +  24206276 agggagc
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3929284 7 +   4030761 agggaac
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4035204 7 +   5013933 agggaac
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113756298 7 - 132174527 agggaac
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   98247 7 -    125141 aggggac
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1            103506 7 +  11725426 aggggac
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            696883 7 +    730879 aggggac
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5791792 7 -  36342412 agggagc
i otoGar3.GL873530               I 1 C 0
s mm10.chr9                       90198697 7 + 124595110 AGGAAAC
i mm10.chr9                      C 0 C 0
s canFam3.chr3                    58222073 7 +  91889043 AGGGAAC
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  857852 6 +   1727078 agggaa-
i dasNov3.JH579681               C 0 C 0
e rheMac8.chr7                    60000945 20 + 169600520 I
e panTro5.chr15                   59832338 58 +  83230942 I

a score=5326704.000000
s hg38.chr15_KI270850v1_alt          43273 614 +    430880 caaggcccaagaggtgaagcagcttgtctgaggtcacccc-gggcgaccaggatgcaggcctgcagatgtgcactttggagct-c--tgcctgGAG-CTGGGGTGGA-GGAG-----------------------------CCTGCCTGCTGCCTCGTGCCCTCTGCCGGGCCTGAGGGA------TGTCCCTGGCACAGGGCTGGCTGCTGTCCTCCTGCTCTTCCTCCCCAGGGAGGTC--TGCTGGAGTAAGCAGGGCCCAGGC----GGCAGGTGGGGGCTGTCAGCAGT-----------GGCAGT-GG---------CATCA------------------GGAGCAAGGCCAGGAGGCTGGAGACAAGCCACTTCCCAAAATAGCTCTGATAACC----ACGGGGCAGGAGGGCCCAGCCAAGCCT-CAGCCC-TGACAACCACAGCCTGCA-GCCGGC----CTCCCTCCCCA--CT------------GGGCCTGGGCTTAGTCCCTGGTTTCCGCTGACAGCCTGTA------------GGGCC----------CA-------CTCA-----CTCTAGGCTTCGT-GGCCCACCTGAGAAGTGGGAGGCTGGCCTGGGAGATGCGACC---------------------TGTGACTCAGAACCCGAGGCTGAGTACAGCCCCTGTGGCT-----------GGAGGTGGTCACGGAGGTCTGGCAGGACAGATGCAC---------TGGGGCAGGG--GGCGGTGGCGGG---AGTC-GGGGGCAGAGGCCGCTGCAGG
s panPan2.chr15                   23069479 614 -  99763055 cgaggcccaagaggtgaagcagcttgtctgaggtcacccc-gggcgaccaggatgcaggcctgcagatgtgcactttggagct-c--tgcctgGAG-CTGGGGTGGA-GGAG-----------------------------CCTGCCTGCTGCCTCGTGCCCTCTGCCGGGCCTGGGGGA------TGTCCCAGGCCCAGGGCTGGCTGCTGCCTTCCTGCTCCTCCTCCCCAGGGAGGTC--TGCTGGAGTAAGCAGGGCCCGGGt----ggcagctgggggctgtcagcagt-----------ggcagt-gg---------catca------------------ggagcAAGGCCAGGAGGCTGGAAACAAGCCACTTCCCAAAATAGCTCTGATAACC----ACGGGGCAGGAGGGCCCAGCCAAGCCT-CAGCCC-TGACAAGCAGAGCCTGCA-GCTGGC----CTCCCTCCCCA--GC------------AGGC-TGGGCTCAGTCCCTGGTTTCCGCTGACGGCCTGTA------------AGGCC----------CA-------CTCA-----CTCTAGGCTTCGT-GGCCCACCTGAGAAGTGGGAGGCTGGCCTGGGAGATGGGACC--------------------CTGTGACTCAGAACCCGAGGCTGAGTACAGCCCCTGTGGCT-----------GGAGGTGGTCACGGAGGCCTGGCAGGACGGATGCAC---------TGGAGCAGGG--GGCGGTAGCGGG---AGTC-GGGGGCAGAGGCCACTGCAGG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            334573 614 -    378907 cgaggcccaagaggtgaagcagcttgtctgaggtcacCCC-GGGCGACCAGGATGCAGGCCTGCAGATGTGCACTTTGGAGCT-C--TGCCTGGAG-CTGGGGTGGA-GGAG-----------------------------CCTGCCTGCTGCCTCGTGCCCTCTGCCGGGCCTGAGGGA------TGTCCCTGGCACAGGGCTGGCTGCTGTCCTCCCGCTCTTCCTCCCCAGGGAGGTC--TGCTGGAGTAAGCAGGGCCCAGGC----GGCAGGTGGGGGCTGTCAGCAGT-----------GGCAGT-GG---------CATCA------------------GGAGCAAGGCCAGGAGGCTGGAAACAAGCCACTTCCCAAAATGGCTCTGATAACC----ACGGGGCAGGAGGgcccagccaagcct-cagccc-tgacaagcacagccTGCA-GCCGGC----CTCCCTCCCCA--CT------------GGGCCTGGGCTTAGTCCCTGGTTTCCGCTGACAGCCTGTA------------GGGCC----------CA-------CTCT-----CTCTAGGCTTCGT-GGCCCACCTGGGAAGTGGGAGGCTGGCCTGGGAGATGGGACC---------------------TGTGAGTCAGAACCCGAGGCTGTGTACAGCCCCTGTGGCT-----------GGAGGTGGTCACGGAGGTCTGGCAGGACAGATGCAC---------Tggggcaggg--ggcggtggcggg---agtc-gggggcagaggccgctgcagg
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     16783 615 -     28805 cgaggcccaagaggtgaagcagcttgtctgaggtcacccc-aggcaaccaagatgcaggcctgcagatgtgcactttggagct-c--tgcctgGAG-CTGGAGTGGA-GGAG-----------------------------CCTGCCTGCTGCCTCATGCCCTCTGCCGGGCCTGGGGGA------TGTCCCAGGCCCAGGGCTGGCTGCTGCCTTCCTGCTCCTCCTCCCCAGGGAGGTC--TGCTGGAGTAAGCAGGGCCTGGGC----GGCAGCTGGGGGCTGTCAGCAGT-----------GGCAGT-GG---------CATCA------------------GGAGCAAGGCCAGGAGGCTGGAAACAAGCCACTTCCCAAAATAGCTCTGATAACC----ACGGGGCAGGAGGgcccagccaagcct-cagccc-tgacaagcacagccTGCA-GCTGGC----CTCCCTCCCCA--GT------------GGGCCTGGGCTCAGTCCCTGGTTTCTGCTGACGGCCTGTA------------AGGCC----------CA-------CTCA-----CTCTAGGCTTCGT-GGCCCACCTGAGAAGTGGGAGGCTGGCCTGGGAGATGGGATC--------------------CTATGACCCAGAACTCAAGGCTGTGTACAGCCCCTGTGGCT-----------GGAGGTGGTCACGGAGGTCTGGCAGGACAGATGCAC---------TGGGGCAGGG--GGCGGTGGTGGG---AGTC-AGGGACAGAGGCTGCTGCAGG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    60000965 592 + 169600520 Caa-gcccaagaggtgaagcagcttgtctgaagtcacCCT-GGGAGACCAAGATGCAAGCCTGCAGATGTGCGCTTTGGAGCT-CTTTGCCTGGAG-CTTTGGTGGAGGGAC-----------------------------cctgcctgctgcctcgtgccctctgctgggcctggggga------tgt-----------------ctgctgccctcctgctcctcctccCCAGGGAGGTC--TGCTGGAGTAAGCGGGGCC--GGC----AGCAGTTGGGGGCTGTCAGCAGT-----------GGCAGTGGG---------CATCA------------------GGAGCAAGG-CAGGAGGCTGG-AACAAG-CACTT-CCAGAATAGCTCTGATAACC-----TGGGGCAGGAGGGCCCAGCCAAGCCT-CAGCCC-TGACGAGCACAGCCTGGAGGCTGGC---TCTCCCTCCCCA-GGT------------GGGGCT-GGCTCAGTCCCTGGTTTCCACTGACAGCCTGTA------------AGGC-----------CA-------CTCT-----CTCTAGGCTTCGTGGGCCCACCTGAGAAGTGGGGGGCTGGTCTGGGAGATGGGA-C--------------------CTGTGACGCAGAACCCGAGGCTGAGTACAGTCCCTGTGGCT-----------GGAGGTGGTCACGAGGGCCTGGCAGGACAGATGTAC---------TGGGGCAGGG--GTCAGT---GGG---AGTT-GGGGGCAGAGGCCGCTGCAGG
i rheMac8.chr7                   I 20 I 6
s macFas5.chr7                    61602206 598 + 171882078 caa-gcccgagaggtgaagcagcttgtctgaagtcacCCT-GGGCGACCAAGATGCAAGTCTGCAGATGTGTGCTTTGGAGCT-C--TGCCTGGAG-CTTTGGTGGA-GGAG-----------------------------CCTGCCTGCTGCCTCGTGCCCTCTGCTGGGCCTGGGGGA------TGT-----------------CTGTTGCCCTCCTGCTCCTCCTCCCCAGGGAGGTC--TGCTGGAGTAAGCAGGGCCCGGGC----AGCAGTTGGGGGCTGTCAGCAGT-----------GGCAGT-GG---------CATCA------------------GGAGCAAGGCCAGGAGGCTGGAAACAAGCCACTTCCCAGAATAGCTCTGATAACC-----TGGGGCAGGAGGGCCCAGCCAAGCCT-CAGCCC-TGACGAGCACAGCCTGGA-GCTGGC----CTCCCTCCCCA--GT------------GGGCCTGGGCTCAGTCCCTGGTTTCTGCTGACAGCCTGTA------------AGGCCC--------ACA-------CTCT-----CTCTAGGCTTTGT-GGCCCATCTGACAAGTGGGAGGCTGGTCTGGGAGATGGGACC--------------------CTGTAACCCAGAACCCAAGGCTGAGTACAGTCCCTGTGGCT-----------GGAGGTAGTCACGGAGGCCTGGCAGGACAGATGCAC---------TGGGGCAGGG--GGTGGTGGAGGG---AGTT-GGGGCCAGAGGCCGCTGCAGG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3925371 606 +   4820037 caaggcccaagaggtgaagcagcgtatctgaggtcacCCCGGGGTGACCAGGATGCATGCCTGCAGATGTACACTTTGGAGCT-C--TGCCTGGAG-TTGGGGTGGA-GGAG-----------------------------CCTGCCTGCTGCCTTGTGCCCTCTGCCGGGCCTGGGGGA------TGTCCCAGG---------GGCTGCTGCCCTCCTGCTCCTCCTCCCTAGGGAGGTC--TGCTGGAATAAGCAGGGCCCGGGC----AACAGTTGGGGGCTGTCAGCAGT-----------GGCAGT-GG---------CATCA------------------GGAGCAAGGCCAGGAGGCTGGGAACAAGCCACTTCCCAAAATAGCTCTGATAACT-----TGGGGCAGGAGGGCCCAGCCAAGCCT-CAGCCC-TGATGAGCACAGCCTGGA-GCTGGC----CTCCCTCCCCA--GT------------GGGCCTGGGCTCAGTCCCTGGTTTCGGCTGACAGCCTGTA------------AGGCC----------CA-------CTCA-----CTCTAGGCTTCGT-GGCCCACCTGAGAAGTGGGAGGCTGGTCTAGGAGATGGGACC--------------------CTGTGACCCAGAACCCGAGGCTGAGTACAGCCCCCATGGCT-----------GGAGGTGGTCACAGAGGCCTGGCAGGACAGATGTAC---------TGGGGCAGGG--GGTGGTGGTGGG---AGTC-GGGGACAGAGGCCACTGCAGG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9787936 588 +  10730278 caaggcccaagaggtgaagcagcgtatctgaggtcacCCC-GGGTGACCAGGATGCATGCCTGCAGATGTACACTTTGGAGCT-C--TGCCTGGAG-TTGGGGTGGA-GGAG-----------------------------CCTGCCTGCTGCCTTGTGCCCTCTGCCGGGCCTGGGGGA------TGTCCCAGG---------GGCTGCTGCCCTCCTGCTCCTCCTCCCTAGGGAGGTC--TGCTGGAATAAGCAGGGCCCGGGC----AGCAGTTGGGGGCTGTCAGCAGT-----------GGCAGT-GG---------CATCA------------------GGAGCAAGGCCAGGAGGCTGGGAACAAGCCACCTCCCAAAATAGCTCTGATAACT-----TGGGGCAGGAGGGCCCAGCCAAGCCT-CAGCCC-TGACGAGCACAGCCTGGA-GCTGGC-----------------------------------CTGGGCTCAGTCCCTGGTTTCTGCTGACGGCCTGCA------------AGGCC----------CA-------CTCA-----CTCTAGGCTTCGT-GGCCCACCTGAGAAGTGGGAGGCTGGTCTGGGAGATGGGACC--------------------CTGTGACCCAGAACCCGAGGCTGAGTACAGCCCCCATGGCT-----------GGAAGTGGTCACGGAGGCCTGGCAGGACAGATGTAC---------TGGGGCAGGG--GGTGGTGGTGGG---AGTC-GGGGACAGAGGCCGCTGCAGG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1329908 596 +  24206276 caa-gcccgagaggtgaagcagcttgcctgaagtcacCCT-GGGCGACCAAGATGCAAGCCTACAGATGTGTGCTTTGGAGCT-C--TGCCTGGAG-CTTTGGTGGA-GGAC-----------------------------cctgcctgctgcctcgtgccctctgctgggcctggggga------tgt-----------------ctgctgccctcctgctcctcctccCCAGGGAGGTC--TGCTGGAGTAAGCAGGGTCCGGGC----AGCAGTTGGGGGCTGTCAGCAGT-----------GGCAGT-GG---------CATCA------------------GGAGCAAGGCCAGGAGGCTGGAAACAAGCCACTTCCCAGAATAGCTCTGATAACC-----TGGGGCAGGAGGGCCCAGCCAAGCCT-CAGCCC-TGACGAGCACAGCCCACA-GCCGGC----CTCCCTCCCCA--GT------------GGGCCTGGGCTCAGTCCCTGGTTTCCGCTGACAGCCTGTA------------AGGCC----------CA-------CTCT-----CTCTAGGCTTTGT-GGCCCACCTGAGAAGTGGGAGGCTGGTCTGGGAGATGGGACC--------------------CTGTGACGCAGAACCCAAGGCTGAGTACAGTCCCTGTGGCT-----------GGAGGTAGTCACGGAGGCCTGGCAGGACAGATGCAC---------TGGGGCAGGG--GGCGGTGGGGGG---AGTT-GGGGCCAGAGGCCGCTGCAGG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3929291 605 +   4030761 caaggcccaagaggtgaagcagcgtatctgaggtcacCCC-GGGTGACCAGGATGCATGCCTGCAGATGTACACTTTGGAGCT-C--TGCCTGGAG-TTGGGGTGGA-GGAG-----------------------------CCTGCCTGCTGCCTTGTGCCCTCTGCCGGGCCTGGGGGA------TGTCCCAGG---------GGCTGCTGCCCTCCTGCTCCTCCTCCCTAGGGAGGTC--TGCTGGAGTAAGCAGGGCCCGGGC----AGCAGTTGGGGGCTGTCAGCAGT-----------GGCAGT-GG---------CATCA------------------GGAGCAAGGCCAGGAGGCTGGGAACAAGCTACTTCCCAAAATAGTTCTGATAACT-----TGGGGCAGGAGGGCCCAGCCAAGCCT-CAGCCC-TGAGGAGCACAGCCTGGA-GCTGGC----CTCCCTCCCCA--GT------------GGGCCTGGGCTCAGTCCCTGGTTTCCGCTGACAGCCTGTA------------AGGCC----------CA-------CTCT-----CTCTAGGCTTCGT-GGCCCACCTGAGAATTGGGAGGCTGGTCTGGGAGATGGGACC--------------------CTGTGACCCAGAACCCGAGGCTGAATACAGCCCCCATGGCG-----------GGAAGTGGTCACGGAGGCCTGGCAGGACAGATGTAC---------TGGGGCAGGG--GGTGGTGGTGGG---AGTC-GGGGACAGAGGCCGCTGCAGG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4035211 606 +   5013933 caaggcccaagaggtgaagcagcgtatctgaggtcacCCC-GGGTGACCAGGATGTGGGCCTGCAGATGTACACTTTGGAGCT-C--TGCCTGGAG-TTGGGGTGGA-GGAG-----------------------------CCTGCCTGCTGCCTTGTGCCCTCTGCCGGGCCTGGAGGA------TGTCCCAGG---------GGCTGCTGCCCTCCTGCTCCTCCTCCCCAGGGAGGTC--TGCTGGAGTAAGCAGGGCCCGGGC----AACAGTTGGGGGCGGTCAGCAGT-----------GGCAGT-GG---------CATCA------------------GGAGCAAGGCCAGGAGGCTGGAAACAAGCCACTTCCCAAAATAGCTCTGATAACC-----TGGGGCAGGAGGgcccagccaagcct-cagccc-tgacaagcacagccTGCA-GCCGGC----CTCCCTCCCCA--GT------------GGGCCTGGGCTCAGTCCCTGGTTTCCGCTGACAGCCTGTA------------AGGCC----------CG-------CTCT-----CTCTAGGCTTTGT-GGCCTACCTGAGAAGTGGGAGGCTGGTCTGGGAGATGGGACC--------------------CTGTGACCCAGAACCCGAGGCTGAGTACAGCCCCTGTGGCT-----------GGAAGTGGTCACGGAGGCCTGGCAGGGCAGATGTAC---------TGGGGCAGCG--GAGAGTGGTGGG---AGTTGGGGGACAGAGGCTGCTGCAGG
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113756305 574 - 132174527 cgaggcctgagaggtgaggcagcttgtgtgaggtcacCCC-AGGCGAGCAGGATGCA-GCCTGCAGATGTGCGCTTTGGAGCT-C--TGCCTGGAG-CTGAGCTGGA-GGAG-----------------------------TCTGCCTGCTGCCTCGTGCCCTCTGCGGGGCCTGGAGGA------TGGCCCAGGCCCAGGGCTGGCTGCTCCTCTCCTGCTCCTCCTCCCCCGGGAGGTC--TGCTGGAGTGAGCAGGGCCAGGGC----GGCAGCTGGGGGTTTTCAGCAGT-----------GACAAC-AG---------CATCA------------------GGAGCAAGGCCAGGAGGCTGGAAAAAAGCCACTTCCCAAAATAGGTCTGATAACC-----ACAGGCAGGAGGGCCCAGCCAAGCCT-CGGCCC-TG-----------------ACAAGC----------------------------------------CTCAGCCCCTGGTTTCCGCTGACAGCCTGCA------------AGGTC----------CA-------GTCT-----TTCGAGGCTTCGT-GGCCTCCCTGAGAAGTGGAAGGCTGGCCTGGGAGATGGGACC--------------------CTGTGACCCCAAAGCCGAGGCTGAGTGCAGCCCCCGTGGCT-----------GGAGGCGGTCACAGAGGCCTGGTAGGACAGGTGCAC---------TGATGCAGGA--GGAGGTGCCAGG---AAT--GGGGGCAGAGGCCACTGCAGG
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   98254 571 -    125141 cgaggcccgagaggtgaggcagcttgtgtgaggtcacCCC-GGGCGAGCAGGATGCA-GCCTGCAGATGTGCGCTTTGGAGCT-C--TGCCCGGAG-CTGGGCTGGA-GGAG-----------------------------CCTGCCTGCTGCCTCGTGCCCTCTGCGGGGCCTGGAGGATGGCCCTGGCCCAGGCCCAGGGTGGGCTGCTCCTCTCCTGCTCCTCCTCCCCCGGGAGATC--TGCTGGAGTGAGCAGGGCCGGGGTGGCAGGCAGCTGGGGGTTTTCAGCAGT-----------GACAGC-AG---------CATCA------------------GGAGCAAGGTCAGGAGGCTGGAAAAAAGCCACTTCCCAAAATAGCTCTGACAACC-----ACAGGCAGGAG-----------------GGCCC-TG-----------------CCGAGC----------------------------------------CTCAGCCCCTGGTTTCCGCTGACAGGCTGCA------------AGGTC----------CA-------GTCT-----TTCGAGGCTTCGT-GGCCTCCCTGAGAAATGGAAGGCTGGCCTGGGAGATGGGACC--------------------CTGTGACCCCAAAGCTGAGGCTGAGTGCAGCCCCCGTGGCT-----------GGAGAGAGTCACAGAGGCCTGGTAGGACAGATGCAC---------TGGTGCAGGA--GGAGGTGCCGGGAGTAGT--GGGGGCAGAGGCCACTGCAGG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1            103513 574 +  11725426 cgaggcccgagaggtgaggcagctcgtgtgaggtcacCCC-GGGCGAGCAGGATGCA-GCCTGCAGATGTGCACTTTGGAGCT-C--TGCCCGGTG-CTGGGCTGGA-GGAG-----------------------------CCTGCCTGCTGCCTCGTGCCCTCTGCGAGGCCTGGAGGA------TGGCCCAGGCCCAGGGCTGGCTGCTCCTGTCCTGCTCCTCCTCCCCCAGGAGGTC--TGCTGGAATGAGCAGGGCCCGGGC----GGCAGCTGGGGGTTGTCAGCAGT-----------GACAGC-AA---------CATCA------------------GGAGCAAGGCCAGGAGGCTGGAAAAAAGCCACTTCCCAAAATAGCTCTGATAACC-----ACAGGCAGGAGGgcccagccgagcct-cagccc-tg-----------------gcaagc----------------------------------------ctcagcccTTGGTTTCCGCTGACAGCCTGCA------------AGGTC----------CA-------GTCT-----TTTGAGCCTTCGT-GCCCTCCCTGAGAAGTGGAAGGCTGGCCTGGGAGATGGGACC--------------------CTGTGACCCCAAAGCCGAGGCTGAGTGCAGCCCCCGTGGCT-----------GGAGGGGGTCACAGAGGCCTGGTAGGACAGGTGCAC---------TGGAGCAGGG--GGAGGTGCTGGG---AGT--GAGGGCAGAGGCCACTGCAGG
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            696890 574 +    730879 cgaggcccgagaggtgaggcagctcgtgtgaggtcacCCC-GGGCGAGCAGGATGCA-GCCTGCAGATGTGCGCTTTGGAGCT-C--TGCCTGGAG-CTGGGCTGGA-GGAG-----------------------------CCTGCCTGCTGCCTCGTGCCCTCTGCGGGGCCTGGAGGA------TGGCCCAGGCCCAGGGCTGGctgctcctctcctgctcctcctcccccGGGAGGTC--TGCTGGAGTGAGCAGGGCCGGGGC----GGCAGCTGGGGGTTTTCAGCACT-----------GACAGC-AG---------CATCA------------------GGAGCGAGGCCAGGAGGCTGGAAAAAAGCCACTTCCCAAAATAGCTCCGATAACC-----ACAGGCAGGAGGgcccagccgagcct-cagccc-tg-----------------acaagc----------------------------------------ctcagcccCTGGTTTCCGCTGACAGCCTGCA------------AGGTC----------CG-------GTCT-----TTTGAGGCTTCGT-GGCCTCCCTGAGAAGGGGAAGGCTGGCCTGGGAGATGGGACC--------------------CTGCGACCCCAAAGCCGAGGCTGAGTGCAGCCCCCATGGCT-----------GGAGGGGGTCACAGAGGCCTGGAAggacaggtgcac---------cggtgcaggg--ggaggtgccggg---agc--gggggcagaggcCACTGCAGG
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5791799 582 -  36342412 cgaggcctgagaggtaaagtagcttatcccaggtggcccg-tggc-actgagaggcagacttggagctGTGTAGTTAGGAACTGC--CGCCGAAAG----GGCTAAA-GGAG-----------------------------CCTG-CTGCTGTCTCGTGCCCTCTGCAGGGCCCAGGGGA------TGTCTCAGGCTCAGGGCTGGCTATTCCCCTCCTGTTC--CCTGCCCCAGGAGGTC--TGCTGGAGTAAGCA---------C----GGCAGCTGGGGGCTGTcagcagc-----------agcagc-agcagcagcaTCATCA------------------GGAACAAAGCCAGCAGGCTGGCAGCAAGCCATTTCCCCAAATAG--------ACA-----TGGGGCAGGAGGGCCTAGCCAGGCCTCCATCCC-TGCCAAGT--GGCCTGCA-GCCTCC----CTCCCTCCCA---GC------------AGACCTGG-CTCAGTCCC-AGTCCCTGCTGATGGCTTACATGGCCAGGGTCGAGGCC----------CA-------CTCTGCACAGTCTGGGCTTCAA-TGCCTACCT---AAGTGGCA-GCTGGCCTGAGAGATGGGACTCTGTTCTGGACTGCGTTGGTCTGTGACCCAGAAGGCAA-GCTGATCATGGCC-----------------------------TACAGA-GCCTAGCAGAGCC--TGCAT---------TAGAGTAGAG--CGAGATGGCAGG-----------------------------
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90198704 582 + 124595110 ----CTTCACTCAGTGCTTAGGTCTGCTGGAGGTCACCCA-GGGGAACTAGTGTGT---------------CAGTTTGGAGTTGC--TGCCGAAAGGATAGGGTGGA-GGGG-----------------------------CTTGTCTGCTGTCTTGTTCCCTCCGCTGCACCTGG-GGA------TGTCCCAGA-CCAGGGCCCACAGCTGCCCTCCTGTGCTTCCTCCCTAGGGA-ATC--TGCAGAAGTAAGCAGGGGTCTG------GGCAGCTGTGG--CTTCAGCAGCAGCAACAGCAAAGCAGT-AG---------CACTG------------------GGAGGAAGGCCAAGGGTCTGGACGCAAGCCACTTTCCAAAATAGTCTT-----CC-----CGGGAGAG------CCAGCCAGGCCT-CAGATTGTGACAA-------CTAGG-GCTGACGACTCTCCCTTCCCT--GTGCCCTGCCaccaggggcctgacccaggctttggttcctactgatgatctctg------------tggccttggccaagtcc-------aact-----ttctgggcttcaC-CACCCAAC---AAAAT---AGGCTG---------------TC--------------------CTGCCACACAAAGGTTCAGGGTGAACATGGTC-----------------------------CACAGGAGACTGGGAGGGTGTGTGTGTGTATGGGGGTGGGGCAGTGATGACAGCAAAGGC---ATGT-GGGACCAATGGAGGTGGCAGA
i mm10.chr9                      C 0 I 18
s canFam3.chr3                    58222080 536 +  91889043 CCCCTCCCCCCGGGTTAAGAGGCTCGCCCGAGGTCACACG-GTGCACACAGGATGCGGGTGTGCAGATGCAC-------AGCTGC--TGCCCGAAG-CCCGGGTGGA-GGAC-----------------------------CCAGCCTGCTGCCTCGTGCCCTCTgcgggcccccggggc------cgc----gg----------------gcTTTCCTG-TCCTCCTCCCCCGGGACGCC--CACTAGA---------------------GGCAGCTGGGGGCTGTCAGCAGG--------------AGC-GG---------------------------------GAGCGAGGCCAAGAGGCTGGAATCAAACCACTTCCCAAAATAGCTGCGACCAGC----ACAGGGCAGCAGGG-CCGGCCAAGCCC-CGCCGT-GGACAAGCGTAGCCCGCA-GCCTTC----CTGTGTCCTCCTTGG------------GAGCCGGGTTTTACCCCCAGG----------------GTC------------ACACC----------CT-------CTCT-----CTTTGGGCCTCAG-GGCCTGGCC-----------------TCTTGGAGCTCGGGTC---------------------TGTGA-GTGGAAGCTGAGGCTCAGTATGACC-CGGGGGCTTGGGGGGCCGGGGGGGCGGTCGGGGGCGTCCAGCAGGGCAGGTGCAC------------GGCAGGGACGGCGGGGGTCGG----GTC-GGGGGCCGAGTCTCCTGCAGG
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  857858 623 +   1727078 ------ctgagaggttaagaggcttgcccaaggtcacaca-gcAGGTCTAGGACTCG-GCCTGCTGATGTGTGGGTTGGAGCTGC--TGCCTGCAG-CCAGCGGGCA-GGAGCCCTCGGAGTGGGAAAGTGCAGCCCAAGACCTACCTGTGGCCACGTGCCATCTGCTGGGCTCAAGGGC------TGTTGCTTGCCTAGGGCTGCTGGTTGCCCTCATGCTTCTCCTCCCCCCGGATGTCGGTGCTGGAGTAAGCAGGGCTCTGGC----GGCAGCTGGGTACTGTCAGCAGC-----------AGCCGC-AG---------CGGCAGCAGGGAGCACACGGCCGGGAGCACGGCCAGGAGCCTGGAAGCAAGCAACTTCTCAAAATAGCGCCGCTAACCAACCACAGGGCAAGAGGGCCCGGCCAAGCCT-CCACCC-CAGCCGGCGCAGCCTGCG-GCCGCC----CTTCCTCCCCA--G-------------GGACCTGGGCTCAGTCGCTGG-CTCTGCTGAGGGCTGGGG------------GGACC----------AAGTCATGGCTCT-----CTCTGGGTCTCAG-CACCATGGTGAGCAGTGGGGGGCTGGCCTGGGA--------C--------------------CTG-------GAAGCTGAGGCCGAGCCAGGCCCATATGGC------------AGGGGTGGTCA-GGAGATCTGGCAGGACTCACACAC---------TG-AGCAGGG--GCTGCTGCAGG------------------------------
i dasNov3.JH579681               C 0 C 0
e panTro5.chr15                   59832338  58 +  83230942 I

a score=6896277.000000
s hg38.chr15_KI270850v1_alt          43887 829 +    430880 TTGGCAG-----GAGGC-CCC-GGGACCGCAGTTCTGTGCCAGGATCTGTC-GGGGAACACCAGGGGTGAGCAAGGATGGAGATGGGATGGCAGGG----CGTCGCCCTGGGCAGGCTC-------TTTAAC-------AGGCA---TGTGA-GGGGGT-CAGGGT-GCG--GTCTCAGGACCTTTCCTCCAGAAACCTCAG-CCCAGCAGCGCCCGTTCTC--GAGTCCT----GGGGTCGGCCGTGAGTAGGTGGGACAGAGACACCAACAGTTGGAGACCTGCAAGT-CCAGTTTGG--GAGCCG--CTCCAGAAACTG-GGGCTCTCTGCTTGGTGGGGAGCTGCTGGAGCCTCCTTGA-------GGTGGTTGGGGTG--------------GGG----------------------------AGCCAGGTTCT---GGATACCCCAAAC--------------CACTGGTTCTGA--------------TGCCTCTC------TGACC--CC-CCACTCCAGGCTGTGAGCGGGACCGCCTGTCCTTCGGGTTCTGTGAGACACTGCGCCTACTGGGCCGCTGCCAGCTGCCCACCGTCCGCACCCAGTGCTGCCGCTCGTGCTCTCCGCCCAGCCACGGCTCCCCCTCCCGAGGCCATCAGCGGGT---CACCCGCCACT-----------GACG----GTGCCA------------------GGATGCACAGACCGACCG--------ACA--------GACCTCAGTG-CCCACCACGGGCTGTGGCGGAGCTCCC-GCCCC--------CTACGCCCTAATGGTGCTAACCCC----CT-CTCACTACCCAGCG-GCAGGCTGGGG----AGCTCC-TCCCC------------------CTC--GAAAAAGGTA-TTTTTTTATTCTAACAGTTTGTGTAACATTTATTATGATTTTACATAAATGAGCATCTACCATTCTAAAGCACAGTGTGACTTCATC-TTGGATTTGGGGAATCTTAAAAGTGAGAAACTCTTCC----CCCGACCCC
s panPan2.chr15                   23070093 826 -  99763055 CTGGCAG-----GAGGC-CCC-GGGACCACAGTTCTGTGCCAGGATCTGTC-CGGGAACACCAGGGATGAGCAAGGATGGAGATGGGGTGGCAGGG----CGTCGCCCTGGGCAGGCTC-------TTTAAC-------AGGCA---TTTGA-GGGGGT-CAGGGT-GGG--GTCTCAGGACCTTTCCTCCAGAAACCTCAG-CCCAGCAGCGCCCGTTCTC--GAGTCCT----GGGGTTGGCCATGAGTAGGTGGGACAGAGACAGCAACAGTTGGAGACCTGCAACT-CCGGTTCGG--GAGCCG--CTCCAGAAACCG-GGGCTCTCTG----GTGGGGAACTGCTGGAGCCTCCTTAA-------GGTGGTTGGCGTA--------------GGG----------------------------AGCCAGGTTCT---GGGTACCCCAAAC--------------TACTGGTTCTGA--------------TGCCTCTC------TGCCC--CCGCCACTCCAGGCTGTGAGCGGGACCGCCTGTCCTTCGGGTTCTGCGAGACGCTGCGCCTACTGGGCCGCTGCCAGCTGCCCACTGTCCGCACCCAGTGCTGCCGCTCGTGCTCTCCACCCAGCCACGGCGCCCCCTCCCGAGGCCATCAGCGGGT---CACCCGCCGCT-----------GACT----GCACCA------------------GGATGCACAGAGCGACCG--------ACA--------GACCTCAGTG-CCCACCACGGGCTGTGGCGGAGCTCCC-GCCCC--------CTGCGCCCTAATGGTGCTAACCCC----CT-CTCACTACCCAGCG-GCAGGCTGGGG----AGCTCC-TCCCC------------------CTC--AAAAAAGGTA-TTTTTTTATTCTAACAGTTTGTGTAACATTTATTATGATTTTACATAAATGAGCATCTACCATTCCAAAGCACAGCGTGACTTCGTC-TTGGATTTGGAGAATCTTAAAAGTGAGAAATTCTTCC----CCCCACCCC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            335187 826 -    378907 ttggcag-----gaggc-CCC-GGGACCGCAGTTCTGTGCCAGGATCTGTC-GGGGAACACCAGGGGTGAGCAAGGATGGAGATGGGAT-GCAGGG----CGTCGCCCTGGGCAGGCTC-------TTTAAC-------AGGCA---TGTGA-GGGGGT-CAGGGT-GGG--GTCTCAGGACCTTTCCTCCAGAAACCTCAG-CCCAGCAGCGCCCGTTCTC--GAGTCCT----GGGGTTGGCCGTGAGTAGGTGGGACAGAGACACCAACAGTTGGAGACCTGCAACT-CCGGTTTGG--GAGCCG--CTCCAAAATCCG-GGGCTCTCTGCTTGGTGGGGAGCTGCTGGAGCCTCCTTAA-------GGTGGTTGGGGTG--------------GGG----------------------------AGCCAGGTTCT---GGGTACCCCAAAC--------------CACTGGTTCTGA--------------TGCCTCTC------TGCCC--CC-CCACTCCAGGCTGTGAGCGGGACCGCCTGTCCTTCGGGTTCTGGGAGACACTGCGCCTACTGGGCCGCTGCCAGCTGCCCACCGTCCGCACCCAGTGCTGCCGCTCGTGCTCTCCACCCAGCCACGGCG-CCCCTCCCGAGGCCATCAGCGGGT---CACCCGCCACT-----------GACG----GTGCCA------------------GGATGCACAGACCGACCG--------ACA--------GACCTCAGTG-CCCACCACGGGCTGTGGCGGAGCTCCC-G-CCC--------CTACGCCCTAATGGTGCTAACCCC----CT-CTCACTACCCAGCG-GCAGGCTGGGG----AGCTCC-TCCCG------------------CTC--GAAAAAGGTA-TTTTTTTCTTCTAACAGTTTGTGTAACATTTATTATGATTTTACATAAATGAGCATCTACCATTCTAAAGCACAGTGTGACTTCGTC-TTGGATTTGGGGAATCTTAAAAGTGAGAAACTCTTCC----CCCGACCCC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     17398 833 -     28805 CTGGCAG-----GAGGC-CCCTGGGACCGCAGTTCTGTGCCAGGATCTGTCGGGGGAACATCAGGGGTGAGCAAGGATGGAGATGGGGTGGCAGGG----TGTCACCCTGGGCAGGCTC-------TTTAAC-------AGGCA---TGTGAGGGGGGT-CAGGGTGGGG--GTCTCAGGACCTTTCCTCCAGAAACCTCAG-CCCAGCAGTGCTGGTTCTC--TAGTCCT----GGGGTTGGCCATGAGCAGATGGGACAGAAGCAGCAACAGCTGGAGATGTGCAACT-CCGGTTCAG--GAGCCG--CTCCAGAAACCG-GGGCTCTCTGCTTAGTGCGGAGCTGCTGGAGCCTCCTTAA-------GGTGGTTGGGGTA--------------GGG----------------------------AGCCAGGTTCT---GGGTACCCCAAAC--------------CACTGGTTCTGA--------------TGCCCCTC------TGCCC--CCCCCATTCCAGGCTGTGAGCGGGACCGCCTGTCCTTCGGGTTCTGCGAGACTTTGCGCCTACTGGGCCGCTGCCAGCTGCCCACCGTCCGTACCCAGTGCTGCCGCTCGTGCTCTCCGCCCAGCCACGGCGCCCCCTCCCGAGGCCATCAGCGGGT---TGCCCGTCGCT-----------GACT----GCGCCA------------------GGATGCACAGACCGACCG--------ACA--------GACCTCAGTG-CCCACCACGGGCTGTGGC-GAGCTCCC-GTCCC--------CTGCGCCCTAATGGTGCTAACCCT----CT-CTCACTGCCCAGTG-GCAGGCTGGGG----ACCTCC-TCTCC------------------CTC--AAAAAAGGTA-TTTTTTTATTCTAACAGTTCGTGTAACATTTATTATGATTTTACATAAATGAGCATCTGCCATTCCAAAGCACAGCATGACTTCATC-TTGGATTTGGAGAATCTTAAAAGTGAGAAACTCTTCC----CCCGACCCC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61602804 820 + 171882078 CTGGCAG-----GAGGC-CCC-AGGACCACAGTTCTGTGCCAGGATCTGTT-GGGGAACACCAGGGATGAGCAAGGATGGAGATGGGGTGGCAGGG----CATCGCCCTGGGCAGACCC-------TTTCAC-------AGGCA---TGTGA-AGGGGT-CAGGGT-GGG--GTCTCAGGACCTTTCCTCCAGAAACCTCAG-CCCAGCAGTGCCCATTCTC--GTGTCAT----GGGGTTGGCCATGAGTAGGTGGGAGAGAGAGAGCAACAGTTGGAGACCTGCAACT-CTGCTTTGG--GAGCCG--CTCCAAAAACCG-GGGATCTCTGCTTGGTGGGGAGCTGCTGGAGCCTCCTTAA-------GGAGGTTGGGGTG--------------GGG----------------------------AGCCAGGTTCT---GGGTACTGTAAAC--------------CACTGGTTCTGA--------------TGCCCCTC------TGTCC--CC-TGACTCCAGACTGTGAGCAGGAC--CCCGTCTTTCGGGTTCTGCGAGACGCTGCACCTACTGGACGGCTGCCAGCTGCCCACCATCCACAC-CAGTGCTGCTGCTCATGCTCTCTGCCCAGCCATGGTGCCCCCTCCTGAGGCCATCAGTGGGTCACCACCCACCGCT-----------GACG----TTGCCA------------------GGATGCACAGACCAACCG--------ACA--------GACCTCAGTG-CCCACAACGGGCTGTGGAGAAGCTCTT-GCCCC--------CTGCGCCCTAATGGTGCTAACC------CT-CTCCCTACCCAGCG-GCAGGCTGGGG---AACCTCC-TCCCC------------------CTCAGAAAAAAAGTA-TTTTTTTATTCTAACAGTTTGTGTAACCTGTATTATTATTTTACATAACTGAACATCTAT----------CACAGTGTGACTTCATC-CTGGATTTGGCAAATCTTAAAAGTCAGAAACTCTTCC----CCCAACCCC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3925977 826 +   4820037 CTGGCAG-----GAGGC-CCC-GGGACCGCAGTTCTGTGGCAGGATCTGTT-GGGGAACACCAGGGGTGAGCAAGGATGGAGATGGGGTGGCAGGG----AGTCGCCCTGGGCAGGCTC-------TTTCAC-------GGGCA---TGTGA-GGGCAT-CAGGGT-GGG--GTCTCAGGACCTTTCCTCCAGAAACCTCAG-CCCAGGAGCACCCGTTCTC--GAGTCCT----GGGGTTGGTCATGAGTAGGTGGGACAGAAACAGCAACAGCTGGAGACCTGCAACT-CCGGTTCGC--GAGCCA--CTCCAAAAACCG-AGGCTCTCTACTTGGTGGGGAGCTGCTGGAGCCTCCTTAA-------GGTGGTTGGGGTG--------------GGG----------------------------AGCCAGGTTCT---GGGTACCCTAAAC--------------CACTGATTCTGA--------------TGCCTCTC------TGCCC--CC-C-ACTCCAGGCTGTGAGCGGGACCGCCTGTCCTTCGGGTTCTGTGAGAGGCTGCGCCTACTGGGCCGCTGCCAGCTGCCGACCATCCGCATGCAGTGCTGCCGCTCATGCTCTCCGCCCAGCCACGGCGTCCCCTCCCGAGGCCATCAGCGGGT---TGCCCGCCGCT-----------GACT----GTGCCA------------------GGATGCACAGACTGACCG--------ACA--------GACCTCAGTG-CCCACCATGGGCTGTGGCGGAGCTCCC-GCCCC--------CTGCGCCCTAATGGTGCTAACC------CT-CTCCCTACCCAGCG-GCAGGCTGGGG----ACCTCC-TCCCC------------------ATC--AAAAAAGGTA-TTTTTTTATTCTAACAGTTCGTGTAACATTTATTACTATTTTACATAAATGAGCATCTACCATTCCAAAGCACAGTGTGACTTCATC-CTGGATTTGGGGAATCTTAAAAGTCAGAAACTCTTCC----CCCAGCCCC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9788524 826 +  10730278 CTGGCAG-----GAGGC-CCT-GGGACCACAGTTCTGTGGCAGGATCTGTT-GGGGAACACCAGGGGTGAGCAAGGATGGAGATGGGGTGGCAGGG----AGTCGCCCTGGGCAGGCTC-------TTTCAC-------GGGCA---TGTGA-GGGCAT-CAGGGT-GGG--GTCTCAGGACCTTTCCTCCAGAAACCTCAG-CCCAGGAGCGCCCGTTCTC--GAGTCCT----GGGGTTGGTCATGAGTAGGTGGGACAGAAACAGCAACAGCTGGAGACCTGCAACT-CCGGTTCGC--GAGCCA--CTCCAAAAACCA-AGGCTCTCTACTTGGTGGGGAGCTGCTGGAGCCTCCTTAA-------GGTGGTTGGGGTG--------------GGG----------------------------AGCCAGGTTCT---GGGTACCCTAAAC--------------CACTGATTCTGA--------------TGCCTCTC------TGCCC--CC-C-ACTCCAGGCTGTGAGCGGGACCGCCTGTCCTTCGGGTTCTGTGAGAGGCTGCGCCTACTGGGCCGCTGCCAGCTGCCGACCATCCGCACCCAGTGCTGCCGCTCGTGCTCTCCGCCCAGCCACGGTGTCCCCTCCCGAGGCCATCAGCGGGT---TGCCCGCCGCT-----------GACT----GTGCCA------------------GGATGCACAGACTGACCG--------ACA--------GACCTCAGTG-CCCACCATGGGCTGTGGCGGAGCTTCC-ACCCC--------CTGCGCCCTAATGGTGCTAACC------CT-CTCCCTACCCAGCG-GCAGGCTGGGG----ACCTCC-TCCCC------------------ATC--AAAAAAGGTA-TTTTTTTATTCTAACAGTTCGTGTAACATTTATTACGATTTTACATAAATGAGCATCTACCATTCCAAAGCACAGTGTGACTTCATC-CTGGATTTGGGGAATCTTAAAAGTCAGAAACTCTTCC----CCCAACCCC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1330504 819 +  24206276 CTGGCAG-----GAGGC-CCC-AGGACCACAGTTCTGTGCCAGGATCTGTT-GGGGAACACCAGGGGTGAGCAAGGATGGAGATGGGGTGGCAGGG----CATCGCCCTGGGCAGACCC-------TTTCAC-------GGGCA---TGTGA-AGGGGT-CAGGGT-GGG--GTCTCAGGACCTTTCCTCCAGAAACCTCAG-CCCAGCAGTGCCCATTCTC--ATGTCAT----GGGGTTGGCCATGAGTAGGTGGGAGAGAGATAGCAACAGTTGGAGACCTGCAACT-CTGCTTCGG--GAGCTG--CTCCAAAAACCG-GGGATCTCTGCTTGGTGGGGAGCTGCTGGAGCCTCCTAAA-------GGAGGTTGGAGTG--------------GGG----------------------------AGCCAGGTTCT---GGGTACTGTAAAC--------------CACTGGTTCTGA--------------TGCCCCTC------TGTCC--CC-TGACTCCAGACTGTGAGCGGGAC--CCCGTCTTTCGGGTTCTGTGAGACGCTGTACCTACTGGACGGCTGCCAGCTGTCCACCATCCACAC-CAGTGCTGCTGCTCATGCTCTCTGCCCAGCCATGGTACCCCCTCCTGAGGCCATCAGTGGGTCACCACCCACCGCT-----------GACG----TTGCCA------------------GGATGCACAGACCAACCG--------ACA--------GACCTCAGTG-CCCACAACGGGCTGTGGAGAAGCTCTC-GCCCC--------CTGCGCCCTAATGGTGCTAACC------CT-CTCCCTACCCAGCG-GCAGGCTGGGG---AACCTCC-TCCCC------------------CTCA-AAAAAAAGTA-TTTTTTTATTCTAACAGTTTGTGTAACCTTTATTATTATTTTACATAACTGAACATCTAT----------CACAGTGTGACTTCCTC-CTGGATTTGGCAAATCTTAAAAGTCAGAAACTCTTCC----CCCAACCCC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3929896 826 +   4030761 CTGGCAG-----GAGGC-CCC-GGGACCGCAGTTCTGTGGCAGGATCTGTT-GGGGAACACCAGGGGTGAGCAAGGATGGAGATGGGGTGGCAGGG----AGTCGCCCTGGGCAGGCTC-------TTTCAC-------GGGCA---TGTGA-GGGCAT-CAGGGT-GGG--GTCTCAGGACCTTTCCTCCAGAAACCTCAG-CCCAGGAGCGCCGGTTCTC--GAGTCCT----GGGGTTGGTCATGAGTAGGTGGGACAGAAACAGCAACAGCTGGAGACCTGCAACT-CCGGTTCGC--GAGCCA--CTCCAAAAACCG-AGGCTCTCTACTTGGTGGGGAGCTGCTGGAGCCTCCTTAA-------GGTGGTTGGGGTG--------------GGG----------------------------AGCCAGGTTCT---GGGTACCCTAAAC--------------CACTGATTCTGA--------------TGCCTCTC------TGCCC--CC-C-ACTCCAGGCTGTGAGCGGGACCGCCTGTCCTTCGGGTTCTGTGAGAGGCTGCGCCTACTGGGCCGCTGCCAGCTGCCGACCATCCTCATGCAGTGCTGCCGCTCGTGCTCTCCGCCCAGCCACGGCGTCCCCTCCCGAGGCCATCAGCGGGT---TGCCCGCCGCT-----------GACT----GTGCCA------------------GGATGCACAGACTGACCG--------ACA--------GACCTCAGTG-CCCACCACGGGCTGTGGCAGAGCTTCC-ACCCC--------CTGCGCCCTAATGGTGCTAACC------CT-CTCCCTACCCAGCG-GCAGGCTGGGG----ACCTCC-TCCCC------------------ATC--AAAAAAGGTA-TTTTTTTATTCTAACAGTTCGTGTAACATTTATTACGATTTTACATAAATGAGCATCTACCATTCCAAAGCACAGTGTGACTTCATC-CTGGATTTGGGGAATCTTAAAAGTCAGAAACTCTTCC----CCCAACCCC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4035817 825 +   5013933 CTGGCAG-----GAGGC-CCT-GGGACCGCAGTTCTGTGCCAGGATCTGTT-GGGGAACACCAGGGGTGAGCAAGGATGGAGATGGGGTGGCAGGG----AGTCGCCCTGGGCAGGCTC-------TTTCAT-------GGGCA---TGTGA-GGGCAT-CAGGGT-GGG--GTCTCAGGACCTTTCCTCCAGAAATCTCAG-CCCAGCAGCGCCCGTTCTC--GAGTCCT----GGGGTTGGTCATGAGTAGGTGGGAGAGAGACAGCAACAGCTGGAGACCTGCAACT-CCGGTTCGG--GAGCCA--CTCCAAAAACCG-AGGCTCTCTACTTGGT-GGGAGCTGCTGGAGCCTCCTTAA-------GGTGGTTGGGGTG--------------GGG----------------------------AGCCAGGTTCT---GGGTACCCTAAAC--------------CACTGGTTCTGA--------------TGCCTCTT------TGCCC--CC-C--CTCCAGGCTGTGAGCGGGACCGCCTATCCTTCGGGTTCTGTGAGAGGCTGCGCCTACTGGGCCACTGCCAGCTGCCAACCATCCGCATGCAGTGCTGCCGCTCGTGCTCTCCGCCCAGCTACGGCGCCCCCTCCCGGGGCCATCAGCGGGT---TGCCCGCCGCT-----------GACT----GTGCCA------------------GGATGCACAGACCAACTG--------ACA--------GACCTCAGTG-CCCACCACGGGCTGTGGCGGAGCTTCC-ACCCC--------CTGCGCCCTAATGGTGCTAACC------CT-CTCCCTACCCAGCG-GCAGGCTGGGG----ACCTCC-TCCCC------------------ATC--AAAAAAGGTATTTTTTTTATTCTAACAGTTTGTGTAACATTTATTATGATTTTACATAAATGAGCATCTACCATTCCAAAGCACAGTGTGACTTCATC-CTGGATTTGGGGAATTTTAAAAGTCAGAAACTCTTCC----CCCAACCCC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113756879 821 - 132174527 CTGGCAG-----CAGCC-CCT-GGGACTGCAGTTTTGTGCCAGGCTCTATC-AGGGGATTCCAAGGCTGAGCAAGGATGGAGATGGGGTGGTGGGG----CATTGCCCCAGGCAGGCTC-------TTCCGT-------GGGCA---TGTGA-GGGGGT-CAGGGT-GGG--GTCTCAGGCCCTTTTCTCCAGAAACCTCAG-CCCACCAGCACCTGTTCTC--CAATCTT---GGGGGTTGGCCATGGGAAGATGGGAGAGAGACAGCCACAGCTGGAGATGTGCAACT-CTGGTTCGG--GAGCTC--CTCCAGAAACTG-GGGCCCTCTGCATAGCAGGGAGCTGCTGGAGACTCCTTAA-------GGTGACTGGTGTG--------------GGG----------------------------AGCCAGGTTCT---GTGTACCCCAAAC--------------CA------CTGA--------------TGTCCCCC-------GCCC--CC-T-ACTCCAGGCTGTGAGCGGGACCGCCTGTCATTCGGATTCTGCGAGACACTGCGCCTGCTGGGCCGCTGCCGGTTGCCCACTGTCCGCACCCAGTGCTGCCACTCATGCCCTCCACCCAGCCATGGCACCCCCTCCCGAGGCCATCAGCGGGC---TGCCCGCCGCT-----------GACC----GCATCA------------------GGATGCACAGACCGACCA--------ACA--------GACCTCAGTG-CCCACCATGGGCTGTGGTGGAGCTCCC-GCCTC--------CTGCGCCCTAATGGTGCTAACCCC----CT-CTCCCCATCCAGCG-GCAGGCTGGGG----ACCTCC-TCCCC------------------GTC--AGAAAAAGTA-TTTTTTTATTATAACAGTTTGTGTAACATTTATTATTATTTTACATAAATGAGCATCTACCATTCCAAAGCACAGTGTGACTTCTTC-TTGGATTTGGAGAATCTT-AAAGTCAGAAACTCTTCT----CCTGACTCC
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   98825 821 -    125141 CTGGCAG-----CAGCC-CCC-GGGACTGCAGTTTTGTGCCAGGCTCCATC-AGGGGATTCCAAGGCTGAGCAAGGATGGA-CCCGAGTGGCAGGG----CATTGCCCTGGGCAGGCTT-------TTCCGT-------GGGCA---TGGGA-AGGGGT-CAGGGT-GGG--GTCTCAGGACCTTTCCTCCAGAAACCTCAG-CCCACCAGCGCCTGTTCTC--CAATCTT---GGGGGTCGGCCATGGGAAGGTGGGACAGAGACAGCCACAGCTGGAGACGTGCAACT-CCAGTTCGG--GAGCCC--CTCCAGAAACCA-GGGCCCTCTGCATGGCAGGGAGCCGCTGGAGCCTCCTTAA-------GGTGACTGGTGTG--------------GGG----------------------------AGCCAGGTTCT---GTGTACCCCAAAC--------------CA------CTGA--------------TGCCCCCC-----CTGCCC--CC-T-A---CAGGCTGTGAGCGGGACCGCCTGTCATTCGGATTCTGTGAGACACTGCGCCTGCTGGGCCGCTGCCAGCTGCCCACTGTCCGCACCCAGTGCTGCCGCTCATGCCCTCCGCCCAGCCATGGCACCCCCTCCCGAGGCCATCAACGGGC---TGCCCGCCGCT-----------GACC----GCATCA------------------GGATGCACAGACCGACCG--------ACA--------GACCTCAGTG-CCCACCACGGGCTGTGGCGGAGCTTCC-GCCTC--------CTGCGCCCTAATGGTGCTAACCCC----CCGCTCCCCATCCAGCA-GCAGGCTGGGG----ACCTCC-TCCCC------------------CTC--AGAAAAGGTA-TTTTTTTATTCTAACAGTTTGTGTACCACTTATTATTGTTTTACATAAATGAGCATCTACCATTCCAAAGCACAGCGTGACTTCTTC-TTGGATTTGGAGAATCTTAAAAGTCAGAAACTCTTCT----CCCGACCCC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1            104087 825 +  11725426 CTGGCAG-----CAGCC-CCC-GGGACTGCAGTTCTGTGCCAGGCTCCATC-AGGGGACTCCAAGGCTGAGCAAGGATGGAGATGGGGTGGCAGGG----CATTGCCCTGGTCAGGCTC-------TTCTGC-------GGGCA---TGTGA-GGGGGT-CAGGGT-GGG--GTCTCAGGACCTTTCCTCCAGAAACCTCAG-CCCACCAGTGCCTGTTCTC--CAATCTT---GGGGGTCAGCCATGGGAAGGTAGGACAGAGACAGCCACAGCTGGAGACGTGCAACT-CCGGTTCGG--GAGCCC--CTCCAGAAACCG-GAGCCCTCTGCATGGCAGGGAGCTGCTGGAGCCTCCTTAA-------GGTGACTGGTGTG--------------GGG----------------------------AGCCAGGTTCT---GTATACCCCAAAC--------------CA------CTGA--------------TGCCCCCC-------GTCC--CC-T-ACTCCAGGCTGTGAGCGGGACCGCCTGTCATTCGGATTCTGTGAGACACTGCGCCTGCTGGGCCGCTGCCAGCTGCCCACTGTCCGCACCCAGTGCTGCCGCTCATGCCCTCCGCCCAGCCATGGCGCCCCCTCCCGAGGCCATCAGCGGGC---TGCCCGCCGCT-----------GACT----GCATCA------------------GGATGCACAGACCGACCA--------ACAGACCTCAGGACCTCAGTG-CCCACCACAGGCTGTGGCGGAGCTCCT-GCCTC--------CTGCGCCCTAATGGTGCTAACCCC----CT-CTCCCCATCCAACG-ACAGGCTGGGG----ACCTCC-TCCCC------------------CTC--AGAAAAGGTA-TTTTTTTATTCTAACAATTTGTGTAACATTTATTA---TTTTACATAAATCAGCATCTACCATTCCAAAGCACAGTGTGACTTCTTC-TTGGATTTGGAGAATCTTAAAAGTCAGAAA--CTTCT----CCCGACCCC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            697464 817 +    730879 CTGGCAG-----CAGCC-CCT-GGGACTGCAGTTCTGTGCCAGGCTCCGTC-AGGGGATTCCAAGGCTGAGCAAGGATGGAGATGGGGTGGCGGGG----CCTTGCTCCAGGCGGGTTC-------TTCCTG-------GGACA---TGCGA-GGGGGT-CAGGGT-GGG--GTCTCAGGCCCTTTCCTCCAGAAACCTCAG-CCCACCAGCGCCTGTTCTC--CAATCTT---GGGGGTCGGCCGTGGGAAGGTGGGACAGAGACAGCCACAGTTGGAGACGTGCAACT-CCGGTTCGG--GAGCCC--CTCCAGAAACCG-GGGCCCTCTGCATGGCAGGGAGCTGCTGGAGCCTCCTTAA-------GGTGACTGGTGTG--------------GGG----------------------------AGCCAGGTTCT---GCGTACCCCAAAC--------------CA------CTGA--------------TGCCCCCC------TGCCC--CC-T-ACTCCAGGCTGTGAGCGGGACCGCCTGTCATTCGGATTCTGCGAGACGCTGCGCCTGCTGGGCCGCTGCCAGCTGCCCACTGTCCGCACCCAGTGCTGCCGCTCATGCCCTCCGCCCAGCCATGGCGCCCCCTCCCGAGGCCATCAGCGGGC---TGCCCGCCGCT-----------GACC----GCATCA------------------GGATGCACAGACCGACCG--------ACA--------GACCTCAGCG-CCCACCACGGGCTGTGGCAGAGCTCCC-GCCTC--------CTGCGCCCTAATGGTGCTAACCCC----CT-CTCCCCATCCAGTG-GCAGGCTGGGG----ACCTCC-TCCCC------------------CTC--AGAAAAGGTA-TTTTTTTATTCTAACAGTTTGTGTAACATTTATTA---TTTTACATAAATGAGCATCTACCATTCCAAAGCACAGCGTGA---CTTC-TTGGATTTGGAGAATCTTAAAAGTCAGAAACTCTTCT----CCTGACCCC
i aotNan1.NW_018503093v1         C 0 I 25
s otoGar3.GL873530                 5792381 644 -  36342412 ---------------------------------------------------------------------------------------------------------------GCAGGCTCCTCGTCTTCTCAT-------GGGCA---TGTGA-GGTGGC-TGGGGA-GGGGTGTCTCCGGGCCTTTTCTACAGAAAAATGAG-CCCAGAGGCCCAAG------------------GGGAC--------------------------------------AGGTTTGCAACTCCCGGTTTAGAAGAGCCC--CTCTAGAAACGGAGGGCCTTCTGCCC-TTGAGGGGCTGTTGAGGCCTCTATGA-------GGC------TGTG--------------GGG----------------------------AGCCAGACTCT---GGG-GCCCTGCAT--------------CCCTGTCCCACC--------------TGCCTC--------TGCCA--CC-C--TCGCAGGTTGTGAGCGTGATCGTCTGTCCTTCGGGTTCTGTGAGACCCTGCGCCTCCTGGGCCGCTGCCAGCTGCCCACCGTCCGCACCCAGTGCTGTCGCACGTGCCCCCTGCCTGGACACAGCGCCCCCTCCCGGGGCCATCAGCGGGT---CGCCCGCCGTT-----------GACT-GGAGCCCCA------------------GGACACACAGACCAACTGCTTGATGCACA--------GACCTCAGCG-CCCACCATGGG-------------------CCC--------CTGTGCCCTAATGGTGCTAATCTC----CT-CCC----------------------G-----------TCCCC------------------CTC--AGAAAAGGTA-TTTTTTTATTCTGACAATT-GTGTAACATTTATTATTATTTTACATAAATAAGCATCTACCATTCCAAAGGACAGCTTGGCTCCATC-ATGGGTTTGGGGAATCTC--AAGTTAGAAGCTGCTCC----CACTACCCC
i otoGar3.GL873530               C 0 I 2
s mm10.chr9                       90199304 855 + 124595110 TTAACAGTGTCTGACAC-ACT-GACA----AGTGGTGGGCCTGATCCTGTC-CAG---TACCAGGGGTGAGCAGGGAGAAAGATGGGGCCGAGAGGTTTACATCGCTGCCAGTAGGCTC-------TT-----------GGGTATCTTCTGA-GGTGGTAAAGGAT-GGG--GTCTTTGAACTTTTCTTCCAGAAAGCTAAGTCCCAACACTG----------------------TCAGTAGTTCAAGGGCAGGTGAGGCAGGGACA---AGAGCTGGGGACCTGGGGTT-CTGATTCTG--GGGCTATCCTTCAGAAACCC-AGTTTCTT------GTTGGTTGCTATT-----CTTCCTAA-------GGCAATAGGGAAA--------------GGGGCTTTTCAGTTGAATCACGGGGTGACAAAGTGTGGTTCT---GGAGGCCATGC-C--------------CACTGATTCTGACCACTGCACCTCCTCTCCTCTC------TTCCCTTCC-C-ATCCCAGGTTGTGAGCGGGATCGCCTGTCCTTCAATTTCTGTGAGACGCTGCGCCTGCTGGGCCGCTGCCAGCTGCCCACCATCCGCGCTCAGTGCTGCCGTTCATGTCCCCCACTCAGTCGTGGTGTCCCTTCCCGAGGCCATCAGCGGGT---AGCCAGACGGTAAACCGAGGAAGGCA----CCATTA------------------GAATGCACAGACTGACCC-TTGACACACA--------GACCTCAGTGCCCCACCACAGGCTGCGGTGGAGCCCCCTGCTCC--------TCGTGCCCTAACGGTGCTAACC------CC-ACCCCTGCACGGTG-GCAGGCTGGGG----ACCCCCTTTCCT------------------TTC--AGAAAAGGTA-TTTTTTTATTCTAACAGTTTGC---ACATTTGTTATTATTTTACATAAATGAGTATCTACCCTTTCAGAG--TGGTTTGGCCTTGTCTTTGGATCTGGAGACTCTCCAATGTGA------CCCCG----CCCTACCCA
i mm10.chr9                      I 18 I 2
s canFam3.chr3                    58222616 634 +  91889043 -----------------------------------------------------------------------------------------------------------CTGG------TC-------TGTGGC-------GGT-----GGAGG-TGGGGT-CGGGGTGGGG--GTCTCAGAACCTTCCCCCTGGAACCCTGA--CTCGGCCTTGCCAGCGCCC--CCCTCCC----GAG--------------------------------ACCTCTGGAGTGCTGAGGCC-CTGGGGTGG--CTGCCG----------GCCG-GTGTGATC------CCAGAGGGTGGC-----CCCCCACGG-------GGTGCT----------------------GG----------------------------TGCCAGCTCC------------------------------------ATCCTGA--------------GGGTCCCT------CCCAC--CC-C-AAACCAGGCTGCGAGCGGGACCGCCTGTCGTTCGGCTTCTGTGAGACCCTGCGTCTGCTGGGCCGCTGCCAGCTGCCGGCCGTCCGCACCCAGTGCTGCCGCTCCTgccccccgccgggccacggcgccccctcccgcggccACCAGCGCAT---TGCCCGCCGCT-----------GACCCGCCCCAGCG------------------GGCTGCCCTGACCGACCC--------CCC--------CACCCAAC---CCCCCCAGACGC----ACGGACCTCAT-GCCCCACTGTGGGCTGCACCCCAAAGGTGCTAACCTG----GC-CTG-----CTGGTG-GCAGGCCGGGG----ACCCCT-CCCCC-----------------------AGAAAAGGTA-TTTTTT-----TAATGGTCTGCATAACCTTTATTA---TTATACATAAACGAGCACCTACAGTTTCAGCGTGCAGCCTGGCTTCCTC-TTGCGTCGGGAGAATTTC---AGGTTGGAGCCCGCCC----CCCGTCCCC
i canFam3.chr3                   C 0 I 1
s dasNov3.JH579681                  858481 932 +   1727078 CTGGCAG----AGAGGCACCT-GCGACTTGAGCTGTGTCCTGGGACCTGTC-AGTGGGT-CCAAGGGTGAGCAGGAATGGCGAGGTGGTGGGGGCT----CACTGCCC-GGGCAGGTTC-------TTTGGCTTCTCTTGGGCA---CCTG--GGTGAT-TGGGGT--GG--GTCTCAGGACCTCTCCTTCAGAAACCCAAG-CTGAGCAGTGCCAATTCTCCAGAGTCCTGGTGGGGCTAGGCCAAGGACAGGTGGGACAGGGACGGCAGCAGCTGGAGACTTGCGACT-CCAGGTCCA--GG------TTTCAGAATCTTTGGGACCTATGCCCTG-GGGTGGCTGCCGCAGCCTGCTTGGAGCTAGTGGTGATGGGGGGGTCAGTGCAGCTGACGGG----------------------------TGGCAGGGACCGAGGGGTGGCTGGAACAGAGCTTGGCGGGTCAGGGGTGCTGCACAGAGGC------GGCCTATCAGGTCCCGCCC--CG-C--CCCTAGGCTGCGAGCGGGATCGCCTGTCTTTCGGGTTCTGCGAGACACTGCGCCTGCTGGGCCGCTGCCAGCTGCCCACCGTCCGCCTGCAGTGCTGCCGCTCCTGTcccccgcccggccgcggcgcccccTCTCGTGGCCGTCAGCAGGT---TGCCCGCCGCT-----------GAAC-TGCGCACCAGCTCGCCGCTGCAGGACCGGATGCACAGACCGACAG----ACGCACG--------GACCTCAGGGCCCCACTATGGGCTGCAGTGGAGACGCC--TCCC--------TCGCGCCCTTATGGTGCTAAAACCCTGGTT-CGCCCTGCCCAGAACGCAGGCTGGGaccccaccccc-accccactcccaccccacccccaccc--caGAAAAGTA-TTTTTTTATTCTGACAGTT----TAACTGTTGTTG---TTATACATAAATGAATATCTACCCTTCCAAAGATCAGCCTGGTTTCATT-TTGGGTTTGGGGCATTTC--AAGTTTGCTCCTCTCCCCAGTCACCACCC-
i dasNov3.JH579681               C 0 C 0
e rheMac8.chr7                    60001557   6 + 169600520 I
e panTro5.chr15                   59832338  58 +  83230942 I

a score=190094.000000
s hg38.chr15_KI270850v1_alt          44716 40 +    430880 TCTGCCCAAAACTCCACCGC---TGCAGCACCT-----------CGGCAGGCGC
s panPan2.chr15                   23070919 40 -  99763055 TCTGCCCAAAACTCCACCGC---CACAGCACCT-----------CGGCAGGCGC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            336013 40 -    378907 TCTGCCCAAAACTCCACCGC---TGCAACACCT-----------CGGCAGGCGC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     18231 40 -     28805 TCTGCCCAAAACTCCACCGC---TGCAGCACCT-----------CGGCATGCAC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s macFas5.chr7                    61603624 40 + 171882078 TCTGCCCAAAACTCCACTGC---AGCAGCACCT-----------CGGTAGGCGC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3926803 40 +   4820037 TCTGCCCAAAACTCCACCAC---GGCAGCACCT-----------TGGCAGGCCC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9789350 40 +  10730278 TCTGCCCAAAACTCCACCAC---AGCAGCACCT-----------TGGCAGGCGC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1331323 40 +  24206276 TCTGCCCAAAACTCCACTGC---AGCAGCACCT-----------CGGTAGGCGC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3930722 40 +   4030761 TCTGCCCAAAACTCCACCAC---GGCAGCACCT-----------TGGCAGGCGC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4036642 40 +   5013933 TCTGCCCAAATCTCCACCAC---GGCAACACCT-----------TGGCAGGTGC
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113757700 39 - 132174527 TCTGCCCCAATCTCCACTGC----GAAGCACCT-----------CAGCAGACAG
i calJac3.chr10                  C 0 I 1
s saiBol1.JH378378                   99646 39 -    125141 TCTGCCCCAATCTCCACTGC----GAAGCATCT-----------CCGCAGGCGG
i saiBol1.JH378378               C 0 I 1
s cebCap1.NW_016107334v1            104912 39 +  11725426 TCTGCCCTAATCTCCACTGC----GCAGCATCT-----------CAGCAGGCTG
i cebCap1.NW_016107334v1         C 0 I 1
s otoGar3.GL873530                 5793027 40 -  36342412 CCTGCCCAAAAGGCGGCTGCCCTCACGGTAGGT-----------CAGCAGA---
i otoGar3.GL873530               I 2 C 0
s mm10.chr9                       90200161 51 + 124595110 TCTTGTCAAATGGCTACTAC---CCTGTCCCCTGTTGGAAGTCAGAGCAGTCAG
i mm10.chr9                      I 2 I 1
s canFam3.chr3                    58223251 18 +  91889043 TCCTCCTGAACCGC--CCGC----------------------------------
i canFam3.chr3                   I 1 C 0
s dasNov3.JH579681                  859413 36 +   1727078 ACTGCCTGAAGTTCCACCAC---TCAAGC--CT-----------CAGAAGAC--
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            698281 25 +    730879 I
e rheMac8.chr7                    60001557  6 + 169600520 I
e panTro5.chr15                   59832338 58 +  83230942 I

a score=398485.000000
s hg38.chr15_KI270850v1_alt          44756 88 +    430880 GGCTTTTCACCTGCTCCTCT-GGG-GCAGATCTGCAGGGG-GCAGCGT-AGCAAACGAGTCCCT-----GAGAGCATGGCATCTGGTG-AGGCACGGA
s panPan2.chr15                   23070959 88 -  99763055 GGCTTCTCACCTGCTCCTCT-GGG-ACAGATCTGCAGGGG-GCAGCGT-AGAAAATGAGTCCAT-----GAGCGCATGGCATCTGGTG-AGGCACGGA
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            336053 88 -    378907 GGCTTTTCACCTGCTCCTCT-GGG-GCAGATCTGCAGGGG-GCAGCGT-AGCAAACAAGTCCCT-----GAGAGCATGGCATCTGGTG-AGGCACGGA
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     18271 88 -     28805 GGCTTCTCACCTGCTCCTCT-GGG-GCAGATCTGCAGGGG-GCAGCGT-AGAAAATGAGTCCAT-----GAGAGTATGGCGTCTGGTG-AGGCACGGA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    60001563 87 + 169600520 GGCTTTTCACCTGC-CCTCT-GGG-GCAGATCTGCAGGGG-GCAGAGCAAGCAATCG-GTCCAT-----GAGAGCGTGGCATCTGGTG-AGGCACGGA
i rheMac8.chr7                   I 6 C 0
s macFas5.chr7                    61603664 78 + 171882078 GGCTTTTCACCGGCTCCTCT-GGG-GCAGATCTGCAGGGG-GCAGAGC-AGCAATCGAGTCCAT-----GACAGCATGGTGTCTGGT-----------
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3926843 88 +   4820037 GGCTTTTCACGTGCTCCTCT-GGG-GCACATCTGCAGTGG-GCAGAGC-AGCAGTCGGGTCCAT-----GAGATCATGGCGTCTGGTG-AGGCACAGA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9789390 88 +  10730278 GGCTTTTCACGTGCTCCTCT-GGG-GCAGATCTGCAGTGG-GCAGAGC-AGCAGTCGGGTCCAT-----GAGAGCATGGCGTCTGGTG-AGGCACAGA
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1331363 78 +  24206276 GGCTTTTCACCTGCTCCTCT-GGG-GCAGGTCTACAGGGG-GCAAAGC-AGCAATCGAGTCCAT-----GACAGCATGGTATCTGGT-----------
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3930762 88 +   4030761 GGCTTTTCACGTGCTCCTCT-GGG-GCAGATCTGCAGTGG-GCAGAGC-AGCAGTCGGGTCCAT-----GAGAGCATGGCGTCTGGTG-AAGCACAGA
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4036682 88 +   5013933 GGCTTTTCATGTGCTCCTCT-GGG-GCAGATCTGCAGTGG-GCAGAGC-AGCAGTCGGGTCCAT-----GAGAGCATGGCGTCTGGTG-AGGCACAGA
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113757740 66 - 132174527 GGCTTTTCACCTGCTCCCCT-GGG-GCAGATCTGCTGGGG-GCAGAGC-AGCAAGTGAGTCTGT-----GAGAGC-----------------------
i calJac3.chr10                  I 1 C 0
s saiBol1.JH378378                   99686 66 -    125141 GGCTTTTCACCTGCTCCCCT-GGG-GCAGATCTGCTGGGG-GCAGAGC-AGCAAGTGAGTCAGT-----GAGAGC-----------------------
i saiBol1.JH378378               I 1 C 0
s cebCap1.NW_016107334v1            104952 66 +  11725426 GGCTTTTCACCTGCTCCCCT-GGG-GCAGATCTGCTGGGG-GCAGAGC-AGCAAGTGAGTCAGT-----GAGAGC-----------------------
i cebCap1.NW_016107334v1         I 1 C 0
s otoGar3.GL873530                 5793067 46 -  36342412 ---------------------GGA-CCTGACCTGTGAGGG-GAAGGAG-GGTGCCTA-----AT-----ATGGGCGTGGA------------------
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90200213 77 + 124595110 AGCTTCTC---TGTTTCTTTGGGG-GCAAATCAGCA-TAA-CCAGCAC-AG------AGGCCAT-----GAAAA---GCAGCCTAATGTAGACACGCA
i mm10.chr9                      I 1 C 0
s canFam3.chr3                    58223269 37 +  91889043 ----CCTCACATGCTCC----CGG-GCACCTCCGGACAGG-TCTGGT---------------------------------------------------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  859449 90 +   1727078 AACTTTTTGC--GCCCCTCT-GGGTGCAGATTAGCAGGGGAGCAGAGA-CGCAAACTAACCCACCCAAAGAGAGTGGGGGCTCAG----AGGCATGGA
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1            698281 25 +    730879 I
e panTro5.chr15                   59832338 58 +  83230942 I

a score=1335323.000000
s hg38.chr15_KI270850v1_alt          44844 190 +    430880 AGGCCTCGGAAGCC-A-GGG--GGCTGCTGCCCA--GGG-AGGCCTGTCT--GCAGAGGGTGGGGTTC---------------TGGGGGCAGGAAGGTCTTCTGGGCAGG-G-GCAC--AGCTTGGC---------------------------------CCTT-------ACTTGCTGCCTGCCTTCAGCTCAGGCTC-CCAGCCTTCCCTGGGGC--CCCACTCTGTGGTCCTCAGAGACCTG--------TTCCACAGGGATTGAG-
s panPan2.chr15                   23071047 190 -  99763055 AGGCCTCAGAAGCT-G-GGG--GGCTGCTCCCCA--GGG-AGGGCTGTCT--GCAGAGGGTGGGGTTC---------------TGGGGGCAGGAAGGTCTTCTGGACAGG-G-GCAC--AGCTTGGC---------------------------------CCTT-------ACTTGCTGCCTGCCTCCAGCTCAGGCTC-CCAGCCTTCCCTGGGTC--CCCACTCTGTGGTCCTCAGAGACCTG--------TTCCACAGGGATCGAG-
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            336141 188 -    378907 AGGCCTCAGAAGCC---GGG--GGCTGCTGCCCA--GGG-AGGCCTGTCT--GCAGAGGGTGGGGTTC---------------TGGGGGCAGGAAGGTCTTCTGGGCA-G-G-GCAC--AGCTTGGC---------------------------------CCTT-------ACTTGCTGCCTGCCTTCAGCTCAGGCTC-CCAGCCTTCCCTGGGGC--CCCACTCTGTGGTCCTCAGAGACCTG--------TTCCACAGGGATTGAG-
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     18359 191 -     28805 AGGTCTCAGAAGCCGG-AGG--GGCTGCTGCCCA--GGG-AGGGCTGTCT--GCAGGGGGTGGGGTTC---------------TGGGGGCAGGAAGGTCTTCTGGGCAGG-G-GCAC--AGCTTGGC---------------------------------CCTT-------ACTTGCTGCCTGCCTCCAGCTCAGGCTC-CCAGCATTCCCTGGGGC--CCCACTCTGTGGTCCTCAGAGACTTG--------TTCCACAGGGATTGAG-
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    60001650 191 + 169600520 GCGCCTTGGAAGCT---GGGG-GGCTGCTGCCCA--GGGAAGGCCTGTCT--GCAGAGGGTGGGGTGC---------------TGGGGGCAGGAAGGTCTTCTGGGCAGG-G-GCAC--AGCTTGGC---------------------------------CCTT-------ACTTGCTGCCTGCCTCCAGCTCAGGCTC-CCAGCCTCCCCTGGGGC--CCCACTCTGTGGTCCTCCGAGACCTG--------TTCCACAGGGATTGAG-
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61603742 187 + 171882078 ---CCTCGGAAGCT---GGGT-GGCTGCTGCCCA--AAG-AGGCCTGTCT--GCAGAGGGTGGGGTTC---------------TGGGGGCAGGAAGGTCTTCTGGGCAGG-G-GCAC--AGCTTGGC---------------------------------CCTT-------TCTTGCTACCTGCCTCCAGCTCAGGCTC-CCAGCCTCCCCTGGGGC--TCCACTCTGTGGTCCTCAGAGACCTG--------TTACACAGGGATTGGG-
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3926931 189 +   4820037 AGGCCTTGGAAGCC---GGG--GGCTGCTGCCCA--GGG-AGGCCTGTGT--GCAGAGGGTGGGGTGC---------------TGGGGGCAGGAAGGTCTTCTGGGCAGG-G-GCAC--AGCTTGGC---------------------------------CCTT-------ACTTGCTGCCTGCCTCCAGCTCAGGCTC-CCAGCGTCCGCTGGGGC--CCCACTCTGTGGTCCTCAGAGACCTG--------TTCCACAGGGATTGGG-
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9789478 189 +  10730278 AGGCCTTAGAAGCC---GGG--GGCTGCTGCCCA--GGG-AGGCCTGTGT--GCAGAGGGTGGGGTTC---------------TGGGGACAGGAAGGTCTTCTGGGCAGG-G-GCAC--AGCTTGGC---------------------------------CCTT-------ACTTGCTGCCTGCCTCCAGCTCAGGCTT-CCAGCGTCCGCTGGGGC--GCCACTCTGTGGTCCTCAGAGACCTG--------TTCCACAGGGATTGGG-
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1331441 187 +  24206276 ---CCTCGGAAGCT---GGGT-GGCTGCTGCCCA--AAG-AGGCCTGTCT--GCAGAGGGTGGGGTTC---------------TGGGGGCAGGAAGGTCTTCTGGGCAGG-G-GCAC--AGCTTGGC---------------------------------CCTT-------TCTTGCTACCTGCCTCCAGCTCAGGCTC-CCAGCCTCCCCTGGGGC--CCCACTCTGTGGTCCTCAGAGACCTG--------TTACACAGGGATTGGG-
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3930850 189 +   4030761 AGGCCTTGGAAGCC---GGG--GGCTGCTGCCCA--GGG-AGGTCTGTGT--GCAGAGGGTGGGGTTC---------------TGGGGGCAGGAAGGTCTTCTGGGCAGG-G-GCAC--AGCTTGGC---------------------------------CCTT-------ACTTGCTGCCTGCCTCCAGCTCAGGCTT-CCAGCGTCCGCTGGGGC--CCCACTCTGTGGTCCTCAGAGACCTG--------TTCCACAGGGATTGGG-
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4036770 189 +   5013933 AGGCCTTGGAAGCT---GGG--GGCTGCTGCCCA--GGG-AGGCCTGTCA--GCAGAGGGTGGGGTGC---------------TGGGGGCAGGAAGGTCTTCTGGGCAGG-G-GCAC--AGCCTGGC---------------------------------CCTT-------ACTTGCTGCCTGCCTCCAGCTCAGGCTC-CCAGCCTCCCCTGGGGC--CCCACTCTGTGGTCGTCAGAGACCTG--------TGCCACAGGGATTGGG-
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113757806 173 - 132174527 AGGCCTCGGGAGCC-A-GGG--GGGTGCTACCCT--GGG-AGACCTGTCT--GCAGAGGGCTGGGTTC---------------TGGGG-CAGGAAGGTTTTCTGGGCAGG-G-GTAC--AGCCTGGC---------------------------------CTTT-------ACTTGCTGCCTGCCTCTAGCTCAGGCAC-CCAGCTTTCCCTGGGGC--CTCACTCTGAGGTCCTCAGAGGCCT------------------------G-
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   99752 173 -    125141 AGGCCTCGGGAGCC-A-GGG--GGATGATACCCT--GGG-AGACCTGTCT--GCAGAGGGCTGGGTTC---------------TGGGG-CAGGAAGGCTTTCTGGGCAGG-G-GTAC--AGCTTGGC---------------------------------CCTT-------ACTTGCTGCCTGCCTCCAGCTCAGGCAC-CCAGCTTTCCCTGGGGT--CCCACTCCGAGGTTCTCAGAGACTT------------------------G-
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1            105018 117 +  11725426 AGGCCTCGGGAACC-A-GGG--GGATGATACCCT--GGG-AGACCTGTCT--GCAGAAGGCTGGGTTC---------------TGGGG-CAGGAAGGTTTTCTGGGCAGG-G-GTAC--AGCTTGGC---------------------------------CC------------------------------------------------------------------AGGTCCTCAGAGACCT------------------------G-
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            698306 171 +    730879 AGGCCTCGGGAGCC-A-AGG--GGATGCTACCCT--GGG-AGACCTGTCT--GCAGAGGGCTGGGTTC---------------TGGGG-CAGG-AGGTTTTCTGGGCAGG-G-GTAC--AGCTTGGC---------------------------------CCTT-------ACGTGCTGCCTGCCTCCAGCTCAGGCAC-CCAGCTTTCCCTGGGG---CCCACTCCGAGGTCCTCAGAGACCT------------------------G-
i aotNan1.NW_018503093v1         I 25 C 0
s otoGar3.GL873530                 5793113 200 -  36342412 TGGGCTCAGAAGTC-A-GGGTGGGCGGCTTCCCAAGGGG-AGGCCTGTCT--GCAGAGGGCTGGACCA---------------TGGGGACAAGGTGTACAGCTTGGCTGA-T-GCTCCTACCATACC---------------------------------CCTG-------ACTTGCTTGGTGCCTCTTGCCCAGGCCCTCCAGTCCTGCCTAGAGCCTCCTACTCTGAGG-CCTCTGAGGCCTGT------CTTTTCCAGAAACTGAG-
i otoGar3.GL873530               C 0 I 26
s mm10.chr9                       90200290 200 + 124595110 AGGTCTTGAAGGCG-GTGGA--GGTGGCTTCTAG--GGA-AGCGGTATCC--CCAGAGGGTTACATGG---------------TATGAGCAGGAAGGTCTTT---GCAGGAG-GTAC--AGGTTGGCAAGAGATCCAGGGAG------------------TCCT-------GTTCAATGTC-----CCTGATCATTCTT--CACCTCTGCCTGCTAT--CTTCCATGAAGGTCCTCAGAGACCTGT------GTTTCACAGAAATAGAG-
i mm10.chr9                      C 0 I 86
s canFam3.chr3                    58223306 124 +  91889043 -GGCCCCCGCAGCT-G-CAG--AGGTG------G--GGC-AGGTCCAACTTGGCAGAGGCCGG--------------------TGGGG---------------GGGCAGT-G-GCCC--CGCTTAGC---------------------------------CT---------------------------------GCAC-CC-----------------CCCACTCCGGGG-CCGCAGAGCCGTG-------GTTTCATGGTGACAGGG-
i canFam3.chr3                   C 0 I 25
s dasNov3.JH579681                  859539 227 +   1727078 -----------------AGG--AGGTGGAGTTTG--AAG-A-----ATCT--GCAGGGTCTTGGAATATTGAGTAAAGCCGGGTGGGGGCGGAG--------CGGGCAGG-GTGCTC--AGCTTGGCAAAGGCCAGAGGGGGGTGGCTCCCACTCACTCTCCTTCCACAGCCCTTACTGCACGCCTCCTGCACAGGCCT-CCAGCCTTTCCCGACAC--CCCACTCCAAGGTGCTGTGGGATGAGCCATGCACTCCCCCAAGCTGCAAGG
i dasNov3.JH579681               C 0 C 0
e panTro5.chr15                   59832338  58 +  83230942 I

a score=3028900.000000
s hg38.chr15_KI270850v1_alt          45034 361 +    430880 CCCACC------TTGTCACTTGCAGGGACTGCCCCCTGG----AG------TGGTGGGGACTGGGGCCCCCATGGGCACCTCCCTGGCTC-----------------TGTCTGTTCTATCTGTTGA----------------------------CTCTTCTGCAAAAAGCGGGCAGAGAGGGG----AAGAGCAGGCTGGCCAATTTTGCCCTACTGTG-TCCCCACGTGTCC----CTTCA-T--------CTCTGTGCCCAGAGATAGGGCTGGGCTAATTGCCACTGCCTTGGGTTGGCCCCT-TTCCCACCACCAG-CCCA-AGCAACAGGTTCCTACCATGCTGATCTATGGTCCAGC-ACCTGGCACCTGCCTACCCACAGCCCCTTCCCCTCCCATAAAATCTAGTCCCATGGAGCCAGACAGTAGTGCCCACAGCA
s panPan2.chr15                   23071237 361 -  99763055 CCCACC------TTGTCACTTGCAGGGACTGCCCTCTGG----AG------TGATGGGGACTGGGGCCCCCATGGGGACCTCCCTGGCCC-----------------TGTCTGTTCTATCTGTTGA----------------------------CTCTTCTGCAAAAAGCAGGCAGAGAGGGG----AAGAGCAGGCTGGCCAGCTGTGCCCTACTGTG-TCCCCACGTGTCC----CTTCA-T--------CTCTGTGCCCAGAGATAGGGCTGGGCTAATTGTCACTGCTTCAGGGTGGCCCCT-TTCCCACCACCAG-CCCC-AGCTACAGGTTCCTACCACGCTGATCTGTGGTCCAGC-ACCTGGCACCTGCCTACCCACAGCCCCTTCCCCTCCCATAAAATCTAGTCCCATGGAGCCAGACAGTGGTGCCCACAGCT
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            336329 358 -    378907 CCCACC------TTGTCACTTGCAGGGACTGCCCCCTGG----AG---------TGGGGACTGGGGCCCCCATGGGCACCTCCCTGGCTC-----------------TGTCTGTTCTATCTGTTGA----------------------------CTCTTCTGCAAAAAGCGGGCAGAGAGGGG----AAGAGCAGGCTGGCCAATTTTGCCCTACTGTG-TCCCCACGTGTCC----CTTCA-T--------CTCTGTGCCCAGAGATAGGGCTGGGCTAATTGCCACTGCCTTGGGGGTGGCCCT-TTCCCACCACCAG-CCCA-AGCAACAGGTTCCTACCATGCTGATCTATGGTCCAGC-ACCTGGCACCTGCCTACCCACAGCCCCTTCCCCTCCCATAAAATCTAGTCCCATGGAGCCAGACAGTAGTGCCCACAGCA
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     18550 359 -     28805 CCCACC------TTGTCACTTGCAGGGACTGCCCCCTGG----AG------TGATGGGGACTGGGGCCCCCATGGGGACCTCCCTGGCCC-----------------TGTCTGTTCTATCTGTTGA----------------------------TTCTTCTGCAAAAAGCGGGCAGAGAGGGG----AAGAGCAGGCTGGCCAACTGTGCCCTACTGTG-TCCTCACGTGTCC----CTTCA-T--------TTC--TGCCCAGAGATAGGGCTGGGCTAATTGCCACTGCCTTGGGGTGGCCCCT-TTCCCACCACCAG-CCCC-AGCTACAGGTTCCTACCACGCTGATCTATGGTCTAGC-ACCTGGCACCTGCCTACCCACAGCCCCTTCCCCTCCCATAAAATCTAGTCCCATGGAGCCAGACAGTGGTGCCCACAGCA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    60001841 360 + 169600520 CCCACT------TTGTCACTTGCAGGGACTGCCCCTTGG----AG------TGGTGGGGACTGGGTCCCCCGTGGGCTCCTCCCTGACCC-----------------TGTCTGTTCCATCTGTTGA----------------------------CTCTTCTGGAAAAAGCAGGCAGAGAGGGG----AAGAGCAGTCTGGCCAGCTGTGCGCTAGTG-G-TCCCCACGTGTCC----CTTCA-T--------CTCTGTGCCCAGAGATAGGGCTGGGCTAATTGCTACCACCTCAGAGTGGCCCCT-TTCCCACCACCAG-CCCC-AGCAACAGGTTCCTACCACGCTGATCGATGGTCCAGC-ACCTGGCACCTTCCTACCCACAGCCCCTTCCCCTCCCATAAAATCTAGTCCCATGGAGCCAGACAGTGGTGCCCACAGCA
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61603929 361 + 171882078 CCCACC------TCGTCACTTGCAGGGACTGCCCCCTGG----AG------TACTGGGGACTGGGGCCCCCATGGGCACCTCCTTGGCCC-----------------TGTCTATTCTATCTGTTGA----------------------------ATCTTCTGCAAAAAGCGGGCAGAGAGGGG----AAAAGCAGGCTGGCCAGCTGTGCCCTACTGTG-TCCCCACATGTCC----CTTCA-T--------CTCTGTGCCCAGAGATAGGGCCGGGCTAATTGCCACTGCCTCAGGTTGGCCCCT-TTCCCACCACCAG-CCCC-AGCAACAGGTTCCTACCATGCTGATTAACGGTTCAAC-ACCAGGCACCTGCCTACCCACAGCCCCTTCCCCTCCCATAAAATCTAGTCCCATGGAGCCAGACAGTGGTGCCCACAGCA
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3927120 361 +   4820037 CCCATC------TTGTCACTTGCAGGGACTGCCCCCTGG----AG------TGATGGGGACTGGGGCCCCCGGGGGCACCTCCCTGGCCC-----------------TGTCTGTTCTATCTGTTGA----------------------------CTCTTCTACAAAAAGCAGGCAGAGAGGGG----AAGAGCAGGCTGGCCAGCTGTGCCCTACTGTG-TCCCCATGTGTCC----CTTCA-T--------CTCTGTGCCCAGAGATAGGGCTGGGCTAATTGCCACTGCCTCGGGGTGGCCCCT-TTCCCACCACCAG-CCCC-AGCAACAGGTTCCTACCACGCTGATCGATGGTCCAGC-ACCTGGCACCTTCCTACCCACAGCCCCTTCCCCTCCCATAAAATCTAGTCCCATGGAGCCAGACAGTGGTGCCCACAGCA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9789667 361 +  10730278 CCCATC------TTGTCACTTGCAGGGACTGCCCCCTGG----AG------TGATGGGGACTGGGGCCCCCGGGGGCACCTCCCTGGCCC-----------------TGTCTGTTCTATCTGTTGA----------------------------CTCTTCTACAAAAAGCGGGCAGAGAGGGG----AAGAGCAGGCTGGCCAGCTGTGCCCTACTGTG-TCCCCATGTGTCC----CTTCA-T--------CTCTGTGCCCAGAGATAGGGCTGGGCTAATTGCCACTGCCTCGGGGTGGCCCCT-TTCCCACCACCAG-CCCC-AGCAACAGATTCCTACCACGCTGATCGATGGTCCAGC-ACCTGGCACCTGCCTACCCACAGCCCCTTCCCCTCCCATAAAATCTAGTCCCATGGAGCCAGACAGTGGTGCCCACAGCA
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1331628 361 +  24206276 CCCACC------TCGTCACTTGCAGGGACTGCCCCCTGG----AG------TACTGGGGACTGGGACCCCCACGGGCACCTCCTTGGCCC-----------------TGTCTATTCTATCTGTTGA----------------------------ATCTTCTGCAAAAAGCGGGCAGAGAGGGG----AAAAGCAGGCTGGCCAGCTGTGCCCTACTGTG-TCCCCACGTGTCC----CTTCA-T--------CTCTGTGCCCAGAGATAGGGCCGGGCTAATTGCCACTGCCTCAGGTTGGCCCCT-TTCCCACCACCAG-CCCC-AGCAACAGGTTCCTACCATGCTGATTGACGGTTCAAC-ACCAGGCACCTGCCCACCCACAGCCCCTTCCCCTCCCATAAAATCTAGTCCCATGGAGCCAGACAGTGGTGCCCACAGCA
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3931039 361 +   4030761 CCCATC------TTGTCACTTGCAGGGACTGTCCCCTGG----AG------TGATGGGGACTGGGGCCCCCGGGGGCACCTCCCTGGCCC-----------------TGTCTGTTCTATCTGTTGA----------------------------CTCTTCTACAAAAAGCGGGCAGAGAGGGG----AAGAGCAGGCTGGCCAGCTGTGCCCTACTGTG-TCCCCATGTGTCC----CTTCA-T--------CTCTGTGCCCAGAGATAGGGCTGGGCTAATTGCCACTGCCTCGGGGTGGCCCCT-TTCCCACCACCAG-CCCC-AGCAACAGGTTCCTACCACGCTGATCGATGGTCCAGC-ACCTGGCACCTGCCTACCCACAGCCCCTTCCCCTCCCATAAAATCTAGTCCCATGGAGCCAGACAGTGGTGCCCACAGCA
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4036959 361 +   5013933 CCCACC------TTGTCACTTGCAGGGACTGCCCCATGG----AG------TGATGGGGACTGGGGCCCCCGGGGGCACCTCCCCGGCCC-----------------TGTTTGTTCTATCTGTTGA----------------------------CTCTTCTGCAAAAAGCAGGCAGAGAGGGG----AAGAGCAGGGTGGCCAGCTGTGCACTACTGTG-TCCCCACATGTCC----CTTCA-T--------CTCTGTGCCCAGAGATAGGGCTGGGCTAATTGCCACTGCCTCGGGGTGGCCCCT-TTCCCACCACCAG-CCCC-AGCAACAGGTTCCTACCATGCTGATCAATGGTCCAGC-ACCTGACACCTGCCTACCCACAGCCCCTTCCCCTCCCATAAAATCTAGTCCCATGGAGCCAGACAGTGGTGCCCACAGCA
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113757979 358 - 132174527 CCCACCTTGCAGGTGTCACCTGCAGGGACTGTACCCTGG----AG------TGATGGGGGCT-GGGCCCCTGTGGGCAGCTCCCTGGCCC-----------------TCTCTGATGTATCTGTTGA----------------------------CTCTTCTGCAAAAACCAGGCAGAGAGGGG----AAGAGCAGGCTGGCCAGCTGTGCCCTTCTATG-TCCCCACGTGTCC----CTTTA-T--------CTCTGTTCCCAGAGATGGGGCTGGGCTAATTCCCACTGCCTCAGGGTGGTCCCT-TCCCCACCACCAG-CCCC-AGAGCCAGGTTCCTACCACGCTGATCTGTGGT-----AACCTGGTACCTGCCTACCCACAGCCCCTTCCCCTCCTATAAAATCTAGTCCTATGG----AGAATGTGGTGCCCACAGCA
i calJac3.chr10                  C 0 C 0
s saiBol1.JH378378                   99925 341 -    125141 CCCACC------GTGTCA-----------------CTGG----AG------TGATAGGAGCTGGGGACCCCATGGGCAGCTCGCTGGCCC-----------------TCTCTGATGTATCTGTTGA----------------------------CTCTTCTGCAAAAACCAGGCAGAGAGGGG----AAGAGCAGGCTGGCCAGCTGTGCCCTTCTGTG-TCCCCACGTGTCC----CTTTA-T--------CTCTGTGCCCAGAGATGGGGCTGGGCTAATTGCCACTGCCTCAGGGTGGTCCCT-TCCCCACCACCAG-CCCC-AGTGCCAGGTTCCTACCACGCTGATCTGTGGTCTAGCAACCTGGCACCTGCCTACCCACAGCCCCTTCCCCTCCCATAATATCTAGTCCCATGG----AGAATGTGGTGCCCACAGCA
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1            105135 344 +  11725426 CCCACT------GTGTCGCTTGCAGGGACTGTCCCCTGA----AG------TGATGGGGGCTGGGGCCCCTGTGGGCAGCTCGCTGGCC-------------------CTCTGATGTATCTGTTGA----------------------------CTCTTCTGCAAAAACCAGGCAGAGAGGGG----AAGAGCAGGCTGGCCAGCTGTGCCCTTCT-----------GTGTCC----CTTTA-----------TCTGTGCCCAGAGACAGGGCTGGGCTAATTCCCACTGCCTCAGGGCAGTCCCT-TTCCCACCACCAG-CCCC-AGCGCCAGGTTCCTACCACGCTGATCTGTGGTTCAGCTACTTGGCACCTCCCTACCCACAGCCCCTTCCCCTCCCATAAAATCTAGTCCCATGG----AGAATGTGGTGCCACCAGCA
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            698477 273 +    730879 CCCACC------GTGTCACTTGCAGGGACTGCCCCCTGG----AG------TGCTGGGGGCT-GGGCCTCTGTGG-------------------------------------------------------------------------------------------------------------------------------------GCCCTTCTGTG-TCCCCACGTGTCC----CTTTA-T--------CTCTGTGCCCAGAGACGGGGCTGGGCTAATTCCCACTGCCTCAGGGCGGTCCCT-TCCCCACCACCAG-CTCC-AGTGCCAGGTTCCTACCACGCTGATCTGTGGCCTAGCAATCTGGCACCTGCCTACCCACAGCCCCTTCCCCTCCCATAAAATCTAGTCCCATGG----AGAATGTGGTGCCCCCAGCA
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5793339 316 -  36342412 CCCATC------CTGTCACCCATGGGAACTGCTCCC-AG----AG------TGATGGGGCCTAAGGCCCC-GTGGGTACCTGTCTGGCCC-----------------TGTGC------TGTGTTAA----------------------------CGCCTCTGCATGA---GGGTGGAGA-GGA----AGAAGCAGGCTGGCCAG-TGCGTCCTTCTGAGCCCCCCATGTGTCCTTTTCCTCA-T--------CTCC-------------------------------CTGACTCAAGGTGGTCCCT-TCCCTACTGCCAACCCCC-GGTACCAGGCTCTTGTTACACTGGCCTATGGTCCAGCCATCTGGTACCTGCCCACCCACAA-CTCTATACTGCCCATAAAAGCTAGTCTCATGAGGCCAGAT-------TCCAAAACT
i otoGar3.GL873530               I 26 C 0
s canFam3.chr3                    58223455 343 +  91889043 CCCTTC------CTGTGTCCAGCAGGACCTGCCCCCCAG----GGAAGACGGGGAGGGGGCTGGTACCCC---GTTAACATGCCTGCATCAGAGGAGAGGAGGAGGGTGGCCAGTGGAGCTGGTGA----------------------------CCCC---------------CAGGGACTGG----AGCAGATGGGCGGCCACC---GCCTTCCTG-G-CCTTTACATGTCC----TGTTT-TGCCACATGCTCTGTGCTCAGAGACA--ACGGGGCTGGTCAC----------AGGTGGTTCCTGCCCCCACTGCCAC-CTCA-AGTGTTGGGCTCCCCCCACGCTGACCTGTG--------ACCTTGCACCTGCCCG-CCACGGCCCCTTC-CCGCCTGCCCAACCTGGGTCCATGGAGCC-------TGTGGACACAGCA
i canFam3.chr3                   I 25 C 0
s dasNov3.JH579681                  859766 334 +   1727078 CCTGTC------TTGTCACCCGCAGGGACTGCCCCCGGGTGGCGG------TGGTGGGGTCTGGGAGCCCTG-----ACCCTTTCCACTG-----------------TGTCTCATTCACCTGTGGAGGGGGTGGAGGGGAGCACCACTGGGCCTTTCCACTGCCCATGTCAGGAGATGAGGGGGTGAAGGAAGGCGCAGGCC--TTGTGCCC--------TCCACTTGTCTTC----CCTCGGT--------CTCTGTGCTC-GGGGTGGGGTAGGGCTGTTCACCTTTGT---------GACCCA-ACCCCACCATCAA-CCCCAAGCACCAGGCTCC-ACTCCACTGGCCTGTGGCTCACC--------------------------------------GCAAAACCTGGTCCC-TGGAGCGAGACACGAGAACATGCCA--
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                       90200490  86 + 124595110 I
e panTro5.chr15                   59832338  58 +  83230942 I

a score=301574.000000
s hg38.chr15_KI270850v1_alt          45395 32 +    430880 GGGAACAGATGGGCATGAAGGTGCTTTGAAGA-------
s panPan2.chr15                   23071598 32 -  99763055 GGGAACAGATGGGCATGAAGGTACTTTGAAGA-------
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1            336687 32 -    378907 GGGAACAGATGGGCATGAAGGTGCTTTGAAGA-------
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random     18909 32 -     28805 GGGAACAGATGGGCATGAATGTGCTTTGAAGA-------
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                    60002201 32 + 169600520 GGGAACAGAGGGGCATGAATGTGCTTTGAAAA-------
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                    61604290 32 + 171882078 GGGAACAGAGGGGCATGAAGGTGCTTTCAAAA-------
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1           3927481 32 +   4820037 GGGAACAGATGAGCATGAATGTGTTTTGAAAA-------
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1           9790028 32 +  10730278 GGGAACAGATGAGCATGAATGTGTTTTGAAAA-------
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                    1331989 32 +  24206276 GGGAACAGAGGGACATGAATGTGCTTTCAAAA-------
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1           3931400 32 +   4030761 GGGAACAGATGAGCATGAATGTGTTTTGAAAA-------
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1           4037320 32 +   5013933 GGGAACAGATGGGCATGAATATGTTTTGAAAA-------
i colAng1.NW_012114844v1         C 0 C 0
s calJac3.chr10                  113758337 32 - 132174527 GGGAACAGATGGGCATGAAGGTGCTTTGAAGA-------
i calJac3.chr10                  C 0 N 0
s saiBol1.JH378378                  100266 32 -    125141 GGGAACAGATGGACATGAAGGTGCTTTGAAGA-------
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1            105479 32 +  11725426 GGGAACAGATGGGCATGAAGGTGCTTTGAAGA-------
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1            698750 32 +    730879 GGGAACAGATGGGCATGAAGGTGCTTTGAAGA-------
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                 5793655  5 -  36342412 ----ACAGA------------------------------
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                       90200576 32 + 124595110 GAGAGCGGCTGGGCATGCAGGTACTTTGAAGA-------
i mm10.chr9                      I 86 C 0
s canFam3.chr3                    58223798 30 +  91889043 GGCAGCAGAGGGGTGTG-AGGTGCCCCAAGA--------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                  860100 39 +   1727078 GGGAGCAGACGGTCCTGAAGGTACTGGGGAGAGTACCAA
i dasNov3.JH579681               C 0 C 0
e panTro5.chr15                   59832338 58 +  83230942 I

a score=70062.000000
s hg38.chr15_KI270850v1_alt         45427 9 +    430880 GGGTCCTGG
s panPan2.chr15                  23071630 9 -  99763055 GCGTCCTGG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           336719 9 -    378907 GGGTCCTGG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    18941 9 -     28805 GGGTCCTGG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60002233 9 + 169600520 GGGTCCTGT
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61604322 9 + 171882078 GGATCCTGT
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3927513 9 +   4820037 GGGTCCTGT
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9790060 9 +  10730278 GGGTCCTGT
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1332021 9 +  24206276 GGATCCTGT
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3931432 9 +   4030761 GGGTCCTGT
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1          4037352 9 +   5013933 GGATCCTGT
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                 100298 9 -    125141 TGGTCCTGG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1           105511 9 +  11725426 GGGTCCTGG
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1           698782 9 +    730879 GGGTCCTGG
i aotNan1.NW_018503093v1         C 0 C 0
s mm10.chr9                      90200608 9 + 124595110 GGATCCTGG
i mm10.chr9                      C 0 I 26
s canFam3.chr3                   58223828 2 +  91889043 --GT-----
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                 860139 9 +   1727078 GGGCCCTGG
i dasNov3.JH579681               C 0 C 0
e otoGar3.GL873530                5793660 0 -  36342412 C
e panTro5.chr15                  59832338 58 +  83230942 I

a score=210823.000000
s hg38.chr15_KI270850v1_alt         45436 37 +    430880 -CCTGACCAGGGGCGGG----------AGGCTGGAGAAGGGG---C-GGACA
s panPan2.chr15                  23071639 35 -  99763055 -CCTGGCCAGGGGCGGG----------AGGCTGGGGAAGGGG---C-GG--A
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           336728 37 -    378907 -CCTGACCAGGGGCGGG----------AGGCTGGAGAAGGGG---C-GGACA
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    18950 37 -     28805 -CCTGGCCAGAGGTGGG----------AGGCTGGGGAAGGGG---C-AGACA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60002242 37 + 169600520 -CCTGGCCAGGGGTGGG----------AGGCTGGGGAAGGGG---C-AGACA
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61604331 37 + 171882078 -CCTGGCCAGGGGCGGG----------AGGCTGGGGAAGGGG---C-AGACA
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3927522 37 +   4820037 -CCTGGCCAGGGGCAGG----------AGGCTGGGGAAGGGG---C-AGACA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9790069 36 +  10730278 -CCTGGCCA-GGGCAGG----------AGGCTGGGGAAGGGG---C-AGACA
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1332030 37 +  24206276 -CCTGGCCAGGGGCAGG----------AGGCTGGGGAAGGGG---C-AGACA
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3931441 37 +   4030761 -CCTGGCCAGGGGCAGG----------AGGCTGGGGAAGGGG---C-AGACA
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1          4037361 37 +   5013933 -CCTggtcaggggcagg----------aggctggggaagggg---c-aggCA
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                 100307 47 -    125141 -CCTGGCCGGGGGTGGGCAGGCTGGGGAGGCTGGGGAGGGGG---A-ACACA
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1           105520 34 +  11725426 -CCTGGCCGGGGGTGGGT---------AGGCTGGGGAGGGGG--------CA
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1           698791 38 +    730879 -CCTGGCTGGGGGTGGGG---------AGGCTGGGGAGGGGG---C-ACACA
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                5793660  6 -  36342412 ----------------------------GATT------------------TA
i otoGar3.GL873530               C 0 C 0
s canFam3.chr3                   58223830 32 +  91889043 ---------GAGGGAGG----------CGGCTGGGGAAGGGGCCAC-ACGCA
i canFam3.chr3                   C 0 I 16
s dasNov3.JH579681                 860148 40 +   1727078 CCAGGGCGGGGGGTAGGG---------AGGCTGGAGCAGCGG---CTGGGCA
i dasNov3.JH579681               C 0 C 0
e mm10.chr9                      90200617 26 + 124595110 I
e panTro5.chr15                  59832338 58 +  83230942 I

a score=1189605.000000
s hg38.chr15_KI270850v1_alt         45473 148 +    430880 CTGTCCT-----------------cccaggc---c----caggcccagccctggatccgac----------------cctggccTCTGGCTGTGAGCCTTAGACTCAG--CCGTT-GACAatttcctcctcagccc------tccccctggaaggtg------ttac-gccccttctacaggt-gggggacactaaggttcagag
s panPan2.chr15                  23071674 148 -  99763055 CTGTCCC-----------------CCCAGGC---C----CAGGCCCAGCCCTGGATCCCTC----------------CCTGGCCTCTGGCTGTGAGCCTTAGACTCAG--CCGTT-GACAatttcctcctcagccc------tccccctggaaggta------ttac-gccccttctccaggt-gggggacactaaggttcagag
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           336765 148 -    378907 CTGTCCT-----------------cccaggc---c----caggcccagccctggatccgac----------------cctggccTCTGGCTGTGAGCCTTAGACTCAG--CCGTT-GACAATTTCCTCCTCAGCCC------TCCCCCTGGAAGGtg------ttac-gccccttctacaggt-gggggacactaaggttcagag
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    18987 154 -     28805 CTGTCCT-----------------cccaggc---c----caggcccagccctggatccaac----------------cctggccTCTGGCTGTGAGCCTTAGACTTAG--CCATT-GGCAATTTCCTCCTCAGCCCCCACCACCTCCCCGGAAGCTG------TTAC-GCCCCCTCTCCAGGT-GGGGGACACTAAGGTTCAGAG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60002279 153 + 169600520 CTGTCCT-----------CCCGGGCCCAGGC---C----CAGGCCCAGGCCTGGATCCAAC----------------CCTGCCCTCTGTCTGTGAGCCTTGGACTCAG--CCGTT-GACAATTTCCTCCTCAGCTC------TCCCCTTggaaggtg------ttac-accccttctccaggt--ggggacactaaggttcagag
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61604368 147 + 171882078 CTGTCCT-----------------CCCAGGC---C----CAGGCCCAGCCCTGGAGCTGAC----------------CCTACCCTCTGTCTGTGAGCCTTGGACTCAG--CCGTT-GACAATTTCCTCCTCAGCCC------TCCCCTTGGAAGGtg------ttac-accccttctccaggt--ggggacactaaggttcagag
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3927559 147 +   4820037 CTGTCCT-----------------CCCAGGC---C----CAGGCCCAGCCCTGGAGCTGAC----------------CCTACCCTCTGTCTACGAGCCTTGGACTCAG--TTGTT-GACAatttcctcctcagccc------tccccctggaaggtg------ttat-gccccttctccaggt--ggggacactaaggttcagag
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9790105 147 +  10730278 CTGTCCT-----------------CCCAGGC---C----CAGGCCCAGCCCTGGAGCTGAC----------------CCTACCCTCTGTCTATGAGCCTTGGACTCAG--TTGTT-GACAatttcctcctcagccc------tccccctggaaggtg------ttat-gccccttctccaggt--ggggacactaaggttcagag
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1332067 147 +  24206276 CTGTCCT-----------------CCCAGGC---C----CAGGCCCAGCCCTGGAGCTGAC----------------CCTACCCTCTGTCTGTGAGCCTTGGACTCAG--CCGTT-GACAATTTCCTCCTCAGCCC------TCCCCTTGAAAGGtg------ttac-accccttctccaggt--ggggacactaaggttcagag
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3931478 147 +   4030761 CTGTCCT-----------------CCCAGGC---C----CAGGCCCAGCCCTGGAGCTGAC----------------CCTACCCTCTGTCTATGAGCCTTGGACTCAG--TTGTT-GACAATTTCCTCCTCAGCCC------TCCCCCTGGAAGGCG------ttat-gccccttctccaggt--ggggacactaaggttcagag
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1          4037398 153 +   5013933 CTGTCCg-----------cccaggcccaggc---c----caggcccagccctggAGCTGAC----------------CCTACCCTCTGTCTGTGAGCCTTGGACTCAG--CTGTT-GACAGTTTCTTCCTCAGCCC------TCCCCCTGGAAGGtg------ttac-gccccttctccaggt--ggggacactaaggttcagag
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                 100354 143 -    125141 CTGTCCT-----------------TCCAGGC---C----CAGGCCCAGCCCCGGATCCCA-----------------CCTGCCCTC--GCTGTGAGCCTTGGATTCAG--CCATT-GACAatttcctcctcagccc------tccccctggaaggtg------taat-gtcccttc-ccagat--gggggtgctaaggttcagag
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1           105554 145 +  11725426 CAGTCCT-----------------CCCAGGC---C----CAGGCCCAGCCCTGGATCCCA-----------------CCTGCCCTCTGGCTGTGAGCCTTGGACTCAG--CCGTT-GACAATTTCCTCCTTAGCCC------TCCCCCTGGAAGGTG------TAAT-GCCCCTTC-CCAGGT--GGGGGCGCAAAGGTTCAGAG
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1           698829 147 +    730879 CTGTCCT-----------------TCCAGGC---C----CAGGCCCAGCCCTGGATCCCA-----------------CCTGCCCTCTGGCTGTGAGCCTTGGACCCAG--CCGTT-GACAATTTCCTCCTTAGCCC------TCGCCCTGGAAGGTG------TAAT-GCCCTTTCTCCAGGT-GGGGGGCGCTAAGGTTCAGAG
i aotNan1.NW_018503093v1         C 0 I 57
s otoGar3.GL873530                5793666 145 -  36342412 CTGCCTT-----------------C-----T---C----CAGGCCCAGCCT--GCATTGCC----------------CCCTCCCTTTGGCT--GAGCCTTAGACTTAG--CCCCT-TCCTAACTTTTCCTGACCTG------TCTGCCTGGAAGGTATTCTGTTTAT-GCCCACTCTCCAAGC-AGGAGGCACTGAGGTTCCGAG
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                      90200643 113 + 124595110 CCTTCCT-----------------CCCAGGC---T----AGGCCCCTG-------ACTGCC----------------CTTTCCTTCTGGCTGTGAGCC------------------------ATCTTCAGGAGTCT------TC----TGGATGGCA------TTATGGGTCCTCCTCCAAGT-TTGAGGCCCTGAGGTTC----
i mm10.chr9                      I 26 C 0
s canFam3.chr3                   58223878 184 +  91889043 CCCTCCTGGGGAGTGCCACACGCAACCAGGCTGAC----CAGGCCCCTCCTGGGGAGTGGCCTGTGCAGGTCCCAGACCTTACCTCTGGCC-CGAGCCTCAGACAGGA--CTCTTCTATAACCCGCTCACCAGTCC------TCCTCCTAGAGGGT-------TGAC-TTCCCTTCTCCAGATGGGGGGACACCAAGGTTCAGAG
i canFam3.chr3                   I 16 I 6
s dasNov3.JH579681                 860188 138 +   1727078 CTGTCCT-----------------TCCCTGC---CTGCTCAGG-CCAGCCGTG--TCTGTC----------------CCTTACCTCTGGTCATGAGCCTTGGACTCAGGTCCTTT-TACAGCCTCCTCA--AGTCC------TCCTCCTGGAAGGTG------TTCT----------CCAAGT--GGGTAGGCC-AGGTTCAGAG
i dasNov3.JH579681               C 0 C 0
e panTro5.chr15                  59832338  58 +  83230942 I

a score=481415.000000
s hg38.chr15_KI270850v1_alt         45621 75 +    430880 -------aggccaCCCTGCAG---CCTACAGGGGTCACCTCTCACATTCTACTCTCCAG--CGTATGACAACCCTGG-AC-G---AAAGGCA
s panPan2.chr15                  23071822 75 -  99763055 -------agCTCGCCCTGCAG---CCTACAGGGGTCACCTCTCACATTCTACTCTCCAG--CGTATGACATCCCTGG-AC-G---AAAGGCG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           336913 74 -    378907 -------aggCCACCCTGCAG---CCTACAGGGGTCACCTTTCACATTCTACTCTCCGG---GTATGACATCCCTGG-AC-G---AAAAGCA
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    19141 75 -     28805 -------AGGCCACCCTGCAG---CCTACAGGGGTCACCTCTCACATTCTACTCTCCAG--CGTGTGACATCCCTGG-AC-G---AAAGGTG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60002432 75 + 169600520 -------aggttGCCCTGCAG---CCTACAGGGGTCACCTCCCACATTCTGTTCTCCAG--CATATGACATCCCTGG-AC-A---AAAGGGG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61604515 75 + 171882078 -------aggtCGCCCTGCAG---CCTACAGGGGTCACCTCTCACATTCTATTCTCCAG--CATATGACATCCCTGG-AC-A---AAAGAGG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3927706 74 +   4820037 -------aggtcaCCCTGCAG---CCTACAGGGGTTACCTCTCACATTCTA-TCTCCAG--CATATGACATCCCTGG-AC-G---AAAGGCG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9790252 74 +  10730278 -------aggtcaCCCTGCAG---CCTACAGGGGTCACCTCTCACATTCTA-TCTCCAG--CATATGACATCCCTGG-AC-G---AAAGGCG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1332214 75 +  24206276 -------aggtcaCCCTGCAG---CCTACAGGGGTCACCTCTCACATTCTATTCTCCAG--CATATGACATCCCTGG-AC-A---AAAGAGG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3931625 74 +   4030761 -------aggtcaCCCTGCAG---CCTACAGGGGTCACCTCTCACATTCTA-TCTCCAG--CATATGACATCCCTGG-AC-G---AAAGGCG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1          4037551 75 +   5013933 -------aggtcaCCCTGCAG---CCTACAGGGGTCACCTCTCACATTCTACTCTCCAG--CATATGACATCCCTGG-AC-G---AAAGGCG
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                 100497 75 -    125141 -------aggtCGCCCTGCAG---CCTACTGGGGCCACCGCTCACATTCTACTCTCCCG--AATATGGCATCCCCAG-AC-A---AAAGGCG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1           105699 75 +  11725426 -------AGGTCGCCCGGCAG---CCTACCCGGGCCGCCGCTCACATTCTACTCTCCCG--CCTATGGCATCCCCGG-AC-A---AAAGGTG
i cebCap1.NW_016107334v1         C 0 C 0
s otoGar3.GL873530                5793811 61 -  36342412 -------AGG--GCCCTGCA---------------TATTTCTCACATTCTGTTCTCCAG--TGTATGACATCCCCAG-AC-T---GAAACTT
i otoGar3.GL873530               C 0 C 0
s mm10.chr9                      90200756 61 + 124595110 ------------------CAG---------GGGGGCACCTGTCCCATTTTATTTGCCAG--AGTGAGGTGCACGTGG-AA-GCATGAAGGCA
i mm10.chr9                      C 0 N 0
s canFam3.chr3                   58224068 70 +  91889043 -------AGGTGCCCCTGGGGGCACCTGCAGGGGATGC----CACATTCCA-----CCA--TGTGTGCCAGTCATGG-TCTG---CAATGTG
i canFam3.chr3                   I 6 I 1
s dasNov3.JH579681                 860326 88 +   1727078 AGATCCAGGGCCACCAGGTACACACCTCCAGGGGACAGCCATCACAGCCTATTCCATGGTGCACATGCTGTCCCCAGAAC-G---CAACATG
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1           698976 57 +    730879 I
e panTro5.chr15                  59832338 58 +  83230942 I

a score=36785.000000
s hg38.chr15_KI270850v1_alt         45696 7 +    430880 --AATGTAG
s panPan2.chr15                  23071897 7 -  99763055 --AGTGTAG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           336987 7 -    378907 --AGTGTAG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    19216 7 -     28805 --AGTGTGG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60002507 7 + 169600520 --AGTGTGG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61604590 7 + 171882078 --AGTGTGG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3927780 7 +   4820037 --AGTGTGG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9790326 7 +  10730278 --AGTGTGG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1332289 7 +  24206276 --AGTGTGG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3931699 7 +   4030761 --AGTGTGG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1          4037626 7 +   5013933 --AGTGTGG
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                 100572 7 -    125141 --AGTGGGA
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1           105774 7 +  11725426 --AGTGGGA
i cebCap1.NW_016107334v1         C 0 C 0
s otoGar3.GL873530                5793872 7 -  36342412 --GATGGGG
i otoGar3.GL873530               C 0 C 0
s canFam3.chr3                   58224139 7 +  91889043 --ATGGTGG
i canFam3.chr3                   I 1 I 1
s dasNov3.JH579681                 860414 6 +   1727078 GCCATG---
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1           698976 57 +    730879 I
e panTro5.chr15                  59832338 58 +  83230942 I

a score=490781.000000
s hg38.chr15_KI270850v1_alt         45703 64 +    430880 CCCTGG--A-----GCCT---GCATGTGGC--AGCC--GCAGCCACTCAGGGCTGGGT--GTATGCTGGGGATGGAGAGG-
s panPan2.chr15                  23071904 64 -  99763055 CCCTGG--A-----GCCT---GCATGTGGC--AGCC--GCGGCCACTTAGGGCTGGGT--GTATGCTGGGGATGGAGGGG-
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           336994 64 -    378907 CCCTGG--A-----GCCT---GCATGTGGC--AGCC--GCGGCCGCTCAGGGCTGGGT--GTATGCTGGGGATGGAGAGG-
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    19223 64 -     28805 CCCTGG--A-----GCCT---GCATGTGGC--AGCC--ATGGCCACTCAGGGCTGGGT--GTATGCTGGAGATGGAGGGG-
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60002514 64 + 169600520 CCCTGG--A-----GTCT---GCATGTGGC--AGCC--ACGCACACTCAGGGCTGGGT--GTATGCTGAGGATGGAGTGG-
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61604597 64 + 171882078 CCCTGG--A-----GCCT---GCATGTGGC--AGCC--ACAGCCACTCAGGGCTGGGT--GTATGCTGAGGACGGAGTGG-
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3927787 64 +   4820037 CCCTGG--A-----GCCT---GCATGTGGC--AGCC--ACGGCCACTCAGGGCTGGGT--GTATGCTGGGGATGGAGGAG-
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9790333 64 +  10730278 CCCTGG--A-----GCCT---GCATGTGGC--AGCC--ACGGCCACTCAGGGCTGGGT--GTATGCTGGGGATGGAGGAG-
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1332296 64 +  24206276 CCCTGG--A-----GCCT---GCATGTGGC--AGCC--ACAGCCACTCAGGGCTGGGT--GTATGCTGGGGACGGAGTGG-
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3931706 64 +   4030761 CCCTGG--A-----ACCT---GCATGTGGC--AGCC--ACGGCCACTCAGGGCTGGGT--GTATGCTGGGGATGGAGGAG-
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1          4037633 64 +   5013933 CCCTGG--A-----GCCT---GCATGTGGC--AGCC--ACGGCCACTCAGGGCTGGGT--GTATGCTGGGGATGGAGGAG-
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                 100579 62 -    125141 CACTGG--A-----GCCT---GCATGTGGC--AGCC--ACGGCTGCTT--GGCTGAAT--GTATGCTGGGGACAGAAGAG-
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1           105781 62 +  11725426 CCCTGG--A-----GCCT---GCATGTGGC--AGCC--ACGGCTGCTT--GGCTGGAT--GTATGCTGGGGACAGAAGAG-
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1           699033 62 +    730879 CCCTGG--A-----GCCT---GCATGTGGC--AGCT--GCGGCTGCTT--GGCTGGAT--GTATGCTGGGGACAGAAGGG-
i aotNan1.NW_018503093v1         I 57 C 0
s otoGar3.GL873530                5793879 47 -  36342412 TCCTGG--AG----GCAC---ACATGGGGC--TG--------------------GGGT--GTGCGCTGGGGGTGAAGGAG-
i otoGar3.GL873530               C 0 C 0
s canFam3.chr3                   58224147 72 +  91889043 CCCTGAGCA-----ATGT---GTACGTTGTGAGGCCATACGGTCACGTGTGGCTGGGTGAGTGTGTGGAGGGTGGGGCGG-
i canFam3.chr3                   I 1 I 200
s dasNov3.JH579681                 860420 68 +   1727078 CTTTGG--AGTTGTGCCTGGGGCATGTGGC--TGCT-------CCCTGAGGGCTGCCT--GTGTGTGGGGAGGGGCAGGGG
i dasNov3.JH579681               C 0 C 0
e panTro5.chr15                  59832338 58 +  83230942 I

a score=60091.000000
s hg38.chr15_KI270850v1_alt         45767 9 +    430880 ---ACACCACTG
s panPan2.chr15                  23071968 9 -  99763055 ---ACACCACTG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           337058 9 -    378907 ---ACACCAGTG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    19287 9 -     28805 ---ACACCATTG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60002578 9 + 169600520 ---ACACCACTG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61604661 9 + 171882078 ---ATACCACTG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3927851 9 +   4820037 ---ACACCACTG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9790397 9 +  10730278 ---ACACCACTG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1332360 9 +  24206276 ---ACACCACTG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3931770 9 +   4030761 ---ACACCACTG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1          4037697 9 +   5013933 ---ACACCACTG
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                 100641 9 -    125141 ---ACACCACTG
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1           105843 9 +  11725426 ---ACGCCATTG
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1           699095 9 +    730879 ---ACACCACTG
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                5793926 6 -  36342412 ---GCGCTG---
i otoGar3.GL873530               C 0 C 0
s dasNov3.JH579681                 860488 9 +   1727078 GAGACACTG---
i dasNov3.JH579681               C 0 C 0
e canFam3.chr3                   58224219 200 +  91889043 I
e panTro5.chr15                  59832338 58 +  83230942 I

a score=46673.000000
s hg38.chr15_KI270850v1_alt         45776 6 +    430880 AAAATC
s panPan2.chr15                  23071977 6 -  99763055 AAAATC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           337067 6 -    378907 AAAATC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    19296 6 -     28805 AAAATC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60002587 6 + 169600520 AAAATC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61604670 6 + 171882078 AAAATC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3927860 6 +   4820037 AAAATC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9790406 6 +  10730278 AAAATC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1332369 6 +  24206276 AAAATC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3931779 6 +   4030761 AAAATC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1          4037706 6 +   5013933 AAAATC
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                 100650 6 -    125141 ATAATC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1           105852 6 +  11725426 AAAATC
i cebCap1.NW_016107334v1         C 0 C 0
s otoGar3.GL873530                5793932 6 -  36342412 AAAACC
i otoGar3.GL873530               C 0 C 0
s dasNov3.JH579681                 860497 6 +   1727078 ACCACC
i dasNov3.JH579681               C 0 C 0
e aotNan1.NW_018503093v1           699104 0 +    730879 C
e canFam3.chr3                   58224219 200 +  91889043 I
e panTro5.chr15                  59832338 58 +  83230942 I

a score=1140456.000000
s hg38.chr15_KI270850v1_alt         45782 274 +    430880 ACTCCTggctgggcgcggtggctcacacctgtaatcccagcactttgggaggctgaggtgggcggatcacctaaggtcaggagtttgaaaccagcctggccaatgtggtgaaaccccatctctactaaaaatacaaaaattagccgggtgcagtggtgggcacctgtaatcccagctacttgggaggctgaggaagaagaatcgcttgaacctgggaggcagaggttgcagtgaactgagatcacgcctttgcactccagcctaggcgacagag
s panPan2.chr15                  23071983 274 -  99763055 ACTCCTggctgggcgtggtggctcacacctgtaatcccagcactttgggaggctgaagcgggcggatcacctgaggtcaggagtttgaaaccagcctgcccaatgtggcaaaaccccatttctgctaaaaatacaaaaattcgccaggtgcggtgatggggacctgtaatcccagctacttgggaggctgaggaaggagaatcgcttgaacccgggaggcggaggttgcagtgagctgagttcgcacctttacacaccagcctgggcgacagag
i panPan2.chr15                  C 0 I 22
s gorGor5.CYUI01015946v1           337073 273 -    378907 ACTCCTggctgggcgcggtggctcacacctgtaat-ccagcactttgggaggctgaggtgggcagatcacctaaggtcaggagtttgaaaccagcctggccaatgtggcgaaaccccatctctactaaaaatacaaaaattagccgggtgcagtggtgggcacctgtaatcccagctacttgggaggctgaggaagaagaatcgcttgaacctgggaggcagaggttgcagtgaactgagatcacgcctttgcactccagcctaggcgacagag
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    19302 274 -     28805 ACTCCTggctgggcgcggtggctcacacctgtaatcccagcactttgggaggctgaggcgggcggatcacttgaggtcaggagtttgaaaccagcctggccaatgtggcaaaaccccatctctgctaaaaatacaaaaattagctgggtgtggtgatgggcacctgtaatcccagctacttgggaggctgagaaaggagaatcgcttgaacctgggaggcggaggttacagtgagctgagatcgcacctttacacaccagcctgggcaacagag
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60002593 262 + 169600520 ACTCCTGACTGGGCACAGTGGC------------tcccagcactttgggagcctgagacaggcagatcacctgaggtcaggagttttaaaccagcctggccaatgtgacaaaacctcgtctctactaaaaatacaaaaattagccagttgcggtggtgggcacctgtaatcccagctacttgggaggctgaggaaggagaattgcttgaacctgagaggcggaggttgcagtaagttgagattgcacctttgcactccagcctgggcaaaaaag
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61604676 273 + 171882078 ACTCCTggctgggtgcggtggctcacgcctgtaatcccagggctttgggagcctgaggcaggcagatcacctgaggtcaggagtttcaaaccagcctggccaatggggcgaaaccccatctctgctaaaaatataaaaattagccaggtgcggtggtgggcacctgtaatcccagctacttgggaggctgaggaaggagaatcgcttgaatcc-gggggtggaggttgcagtaagctgagattgcacctttgcactccagcctgggcgacagag
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3927866 273 +   4820037 ACTCCTggctgggtgcagtggctcacgcttgtaatcccagtgctttgggaggct-aggtgggcggatcacctgaggtcaggagtttgaaaccagcctggccaatgtggcaaaaccctgtctctgctagaaatacaaaaattagccgggtgcggtggtgggcacctgcaatcccagctactcaggaggctgaggaaggagaatcacttgaacccaggaggcggaggttgcagagagctgagatcacgcctttacactccatcctgggcaacagag
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9790412 273 +  10730278 ACTCCTggctgggtgcagtggctcacgcttgtaatcccagtgctttgggaggct-aggtgggtggatcacctgaggtcaggagtttgaaaccagcctggtcaatgtggcaaaaccctgtctctgctaaaaatacaaaaattagccgggtgcggtggtgggcacctgcaatcccagctactcaggacgccgaggaaggagaatcacttgaacccaggaggcggaggttgcagagagctgagatcgcgcctttacactccatcctgggcaacagag
i cerAty1.NW_011999477v1         C 0 I 14
s chlSab2.chr29                   1332375 273 +  24206276 ACTCCTggctgggtgcggtggctcacgcctgtaatcccagggctttggcagcctgaggcaggcagatcacctgaggtcaggagtttcaaaccagcctggccaatggggcgaaaccccatctctactaaaaatacaaaaattagccaggtgcggtggtgggcacctgtaatcccagctacttgggaggctgagggaggagaatcgcttgaatcc-gggggcggaggttgcagtaagctgagattgcacgtttgcactccagcctgggtgacagag
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3931785 273 +   4030761 ACTCCTggctgggtgcagtggctcacgcttgtaatcccagtgctttgggaggct-aggtgggcggatcacctgaggtcaggagtttgaaaccagcctggccaatgtggcaaaaccctgtctctgctaaaaatacaaaaattagtcgggtgcggtggtgggcacctgcaatcccagctactcaggaggctgaggaaggagaatcacttgaacccaggaggcggaggttgcagagagctgagattgcgcctttacactccatcctgggcaacagag
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1          4037712 274 +   5013933 ACTCCTggctgggtgcattggctcacgcctgtaatcccagtgctttgggaggctgaggtgggcggatcacctgaggtcaggagtttgaaaccagcctggccagtgttgcaaaaccccgtctctgctaaaaatacaaaaattagccgagtgcggtggtgggcacctgtaatcccagctactcaggaggctgaggaaggagaatcacttgaacccaggtggcggaggttgcggagagctgagatcgcgcctttacactccatcctgggcaacagag
i colAng1.NW_012114844v1         C 0 I 7827
s otoGar3.GL873530                5793938  65 -  36342412 ACTC--------------------------------------CCTTGGGA--------------------CTGAGGCCAAGA--------------------------------------------AACAGTACA------------------------------------------------------GAGGTAGG------------ACCCAGGACCTGGA-----------------------------------------GGAGACAGAG
i otoGar3.GL873530               C 0 C 0
e aotNan1.NW_018503093v1           699104   0 +    730879 C
e dasNov3.JH579681                 860503   0 +   1727078 C
e canFam3.chr3                   58224219 200 +  91889043 I
e cebCap1.NW_016107334v1           105858   0 +  11725426 C
e saiBol1.JH378378                 100656   0 -    125141 C
e panTro5.chr15                  59832338  58 +  83230942 I

a score=29165.000000
s hg38.chr15_KI270850v1_alt         46056 22 +    430880 ggaggagactgtgtctcaaaga
s gorGor5.CYUI01015946v1           337346 22 -    378907 ggaggagactgcgtctcaaaga
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    19576 19 -     28805 ---tgagactccatctcaaaaa
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60002855 19 + 169600520 ---caagactgcatctcaaaaa
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61604949 19 + 171882078 ---ggagactgcatctaaaaaa
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3928139 19 +   4820037 ---tgagactccatctcaaaaa
i macNem1.NW_012011533v1         C 0 C 0
s chlSab2.chr29                   1332648 19 +  24206276 ---ggagactgcatctaaaaaa
i chlSab2.chr29                  C 0 I 2
s manLeu1.NW_012102632v1          3932058 19 +   4030761 ---tgagactccatctcaaaaa
i manLeu1.NW_012102632v1         C 0 I 2
s otoGar3.GL873530                5794003  3 -  36342412 ---GGA----------------
i otoGar3.GL873530               C 0 C 0
e aotNan1.NW_018503093v1           699104  0 +    730879 C
e dasNov3.JH579681                 860503  0 +   1727078 C
e canFam3.chr3                   58224219 200 +  91889043 I
e cebCap1.NW_016107334v1           105858  0 +  11725426 C
e panPan2.chr15                  23072257 22 -  99763055 I
e colAng1.NW_012114844v1          4037986 7827 +   5013933 I
e cerAty1.NW_011999477v1          9790685 14 +  10730278 I
e saiBol1.JH378378                 100656  0 -    125141 C
e panTro5.chr15                  59832338 58 +  83230942 I

a score=15630.000000
s hg38.chr15_KI270850v1_alt         46078 9 +    430880 aaagaaaag
s gorGor5.CYUI01015946v1           337368 9 -    378907 aaagaaaag
i gorGor5.CYUI01015946v1         C 0 I 7
s nomLeu3.chr6_GL398151_2_random    19595 1 -     28805 a--------
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60002874 9 + 169600520 aaaaaaaaa
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61604968 9 + 171882078 aaaaaaaaa
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3928158 9 +   4820037 aaaaaaaaa
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9790699 9 +  10730278 aaaaaaaaa
i cerAty1.NW_011999477v1         I 14 C 0
s chlSab2.chr29                   1332669 9 +  24206276 aaaaaaaaa
i chlSab2.chr29                  I 2 C 0
s manLeu1.NW_012102632v1          3932079 9 +   4030761 aaaaaaaaa
i manLeu1.NW_012102632v1         I 2 C 0
e aotNan1.NW_018503093v1           699104 0 +    730879 C
e dasNov3.JH579681                 860503 0 +   1727078 C
e canFam3.chr3                   58224219 200 +  91889043 I
e cebCap1.NW_016107334v1           105858 0 +  11725426 C
e otoGar3.GL873530                5794006 0 -  36342412 C
e panPan2.chr15                  23072257 22 -  99763055 I
e colAng1.NW_012114844v1          4037986 7827 +   5013933 I
e saiBol1.JH378378                 100656 0 -    125141 C
e panTro5.chr15                  59832338 58 +  83230942 I

a score=25007.000000
s hg38.chr15_KI270850v1_alt         46087 9 +    430880 aaaagaaaa
s panPan2.chr15                  23072279 9 -  99763055 aaaataaaa
i panPan2.chr15                  I 22 I 1
s gorGor5.CYUI01015946v1           337384 9 -    378907 aaaagaaaa
i gorGor5.CYUI01015946v1         I 7 C 0
s nomLeu3.chr6_GL398151_2_random    19596 9 -     28805 aaaaaaaaa
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60002883 8 + 169600520 -aaaaaaaa
i rheMac8.chr7                   C 0 I 8
s macFas5.chr7                   61604977 8 + 171882078 -aaaaaaag
i macFas5.chr7                   C 0 I 17
s macNem1.NW_012011533v1          3928167 8 +   4820037 -aaaaaaag
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9790708 8 +  10730278 -aaaaaaaa
i cerAty1.NW_011999477v1         C 0 I 1
s chlSab2.chr29                   1332678 8 +  24206276 -aaaaagag
i chlSab2.chr29                  C 0 I 17
s manLeu1.NW_012102632v1          3932088 8 +   4030761 -aaaaaaaG
i manLeu1.NW_012102632v1         C 0 C 0
e aotNan1.NW_018503093v1           699104 0 +    730879 C
e dasNov3.JH579681                 860503 0 +   1727078 C
e canFam3.chr3                   58224219 200 +  91889043 I
e cebCap1.NW_016107334v1           105858 0 +  11725426 C
e otoGar3.GL873530                5794006 0 -  36342412 C
e colAng1.NW_012114844v1          4037986 7827 +   5013933 I
e saiBol1.JH378378                 100656 0 -    125141 C
e panTro5.chr15                  59832338 58 +  83230942 I

a score=9800.000000
s hg38.chr15_KI270850v1_alt         46096 6 +    430880 aaaaTT
s panPan2.chr15                  23072289 6 -  99763055 aaaaTT
i panPan2.chr15                  I 1 C 0
s gorGor5.CYUI01015946v1           337393 6 -    378907 gaaaTT
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    19605 6 -     28805 aaaaTT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60002899 6 + 169600520 aaaTTT
i rheMac8.chr7                   I 8 C 0
s macFas5.chr7                   61605002 6 + 171882078 TAAATT
i macFas5.chr7                   I 17 C 0
s cerAty1.NW_011999477v1          9790717 6 +  10730278 aaaGTG
i cerAty1.NW_011999477v1         I 1 C 0
s chlSab2.chr29                   1332703 6 +  24206276 TAAATT
i chlSab2.chr29                  I 17 C 0
s manLeu1.NW_012102632v1          3932096 2 +   4030761 ----TG
i manLeu1.NW_012102632v1         C 0 C 0
s aotNan1.NW_018503093v1           699104 6 +    730879 AAAATC
i aotNan1.NW_018503093v1         C 0 C 0
e dasNov3.JH579681                 860503 0 +   1727078 C
e canFam3.chr3                   58224219 200 +  91889043 I
e cebCap1.NW_016107334v1           105858 0 +  11725426 C
e otoGar3.GL873530                5794006 0 -  36342412 C
e colAng1.NW_012114844v1          4037986 7827 +   5013933 I
e macNem1.NW_012011533v1          3928175 0 +   4820037 C
e saiBol1.JH378378                 100656 0 -    125141 C
e panTro5.chr15                  59832338 58 +  83230942 I

a score=827281.000000
s hg38.chr15_KI270850v1_alt         46102 147 +    430880 ACTCCTTAGGGACTGAGACCAAGAAA-----GAGCATCAGAGGCTGAACCCCTTGGTGAAGAGCGTCTGTCCCAGGACTTG--GAAGGGAGGGA---GGGGAATGTGGCCAGGGGGGC------TGCCTGCAGGTG---TCTGTCCTGCTGCTCCTCAAATCAACA
s panPan2.chr15                  23072295 146 -  99763055 ACTCCTTAGGGGCTGAGACCAAGAAA-----CAGTAACAGAGGCTGAACCCCTCGGCGATGAGCGTCTGTCCCAGGACTTG--GAAAGGAGGGA----GGGAGCATGGCCACGGCAGC------TGCCTGCAGGTG---CGTGTCCTGCTGCTCCCCAATTCAACA
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           337399 147 -    378907 ACTCCTTAGGGACTGAGACCAAGAAA-----GAGCATCAGAGGCTGAACCCCTTGGTGATGAGCGTCTGTCCCAGGACTTG--GAAGGGAGGGA---GGGGAACGTGGCCAGGGGGGC------TGCCTGCAGGTG---CCTGTCCTGCTGCTCCTCAACTCAACA
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    19611 146 -     28805 ACTCCTTAGGGACTGAGACCAAGAAA-----CAGTATCAGAGGCCGAACCCCTCAGTGATGAGCATCTGTCCCAGGACTCA--GAAGGGAGGGA----GGGAGCGTGGCCACGGCAGC------TGCCTGCAGGTG---TGTGTCCTGCTGCTCCCCAACTCAACA
i nomLeu3.chr6_GL398151_2_random C 0 I 5785
s rheMac8.chr7                   60002905 146 + 169600520 ACTCCTTAAGGACTGAGACCAAGAAA-----CAGTATCAGAGGCTGAACCCTTTTGTGATGAATGTCTGTCCCAGGACTTG--GAAGGGAGGGA----GGGAGCGTGACCAGGGGGGC------TGCCTGAAGGTG---CCTGTCCTGCTGCTCCCCAACTCAACA
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61605008 142 + 171882078 ACTCCTTAGGGACTGAGACCAAGAAA-----CAATATCAGAGGCTGAACCCCTTGGCAATGAGCATCTGTCCCAGGACTT------GGGAGGGA----GGGAGCATGGACAGGGTGGC------TGCCTGCTGGTG---TGTGTCCTGCTGCTCCCCAACTCAACA
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3928175 145 +   4820037 aCTCCTTAGGGACTAAGACCAAGAAA-----CAGTATCAGAGGCTGAATCTTTT-GCGATGAGTGTCTGTCCAAGGACTTG--GAAGGGAGGGA----GGGAGCGTGAGCAGGGTGGC------TGCCTGCAGGTG---CGTGTCCTGCTGCTCCCCAATTCAACA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9790723 145 +  10730278 ACTCCTTAGGGACTAAGACCAAGAAA-----CAGTATCAGAGGCTGAATCTTTT-GTGATGAGTGTCTGTCCAAGGACTTG--GAAGGGAGGGA----GGGAGCGTGACCAGGGCGGC------TGCCTGCAGGTG---CGTGTCCTGCTGCTCCCCAATTCAACA
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1332709 141 +  24206276 ACTCCTTAGGAACTGAGACCAAGAAA-----CAATATCAGAGGCTGAACCCCTTGGCAATGAGCATCTGTCCCAGGACTTG--GGA-----GGA----GGGAGCATGGCCAGGGTGGC------TGCCTGCTGGTG---CGTGTCCTGCTGCTCCCCAACTCAACG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3932098 145 +   4030761 ACTCCTTAGGGACTAAGACCAAGAAA-----CAGTATCAGAGGCTGAATCTTTT-GCGATGAGTGTCTGTCCAAGGACTTG--GAAGGGAGGGA----GGGAGCGTGACCAGGGTGGC------TGCCTGCAGGTG---TGTGTCCTGCTGCTCCCCAATTCAACA
i manLeu1.NW_012102632v1         C 0 C 0
s saiBol1.JH378378                 100656 145 -    125141 ACTCCGTAGGGACTGAGACCAAGAAA-----CAATATCAGAGGCTGAACCCCTTGGTGATGAGCATCTGTCCCAGGACTTG--GAAGCAATGGA----GGGAGCGTGGCCAGGGCGGC------TGCCTGCGGGTG---TGTGCCCTGCTGTTCC-CAACTCCACA
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1           105858 150 +  11725426 ACTCCATAGGGACTGAGACCAAGAAACAGTTCAGTATCAGAGGCTGAACCCCTTGGTGATGAGCGTGTGTCCCAGGACTTG--GAAGCGATGGA----GGGAGCGTGGCCAGGGCGGC------TGCCTGCGCGTG---TGTGCCCTGCTGCTCC-CCACTGCACG
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1           699110 145 +    730879 ACTCCTTAGGGACTGAGGCCAAGAAA-----CAGTATCAGAGGCTGAACCCCTTGGTGATGAGCGTCTGTCCCAGGACTTG--GAAGGGATGGA----GGGAGCGTGGCCAGGGCGGC------TGCCTGTGGGTG---TGTGCCCTGCTGCTCC-CAACTCCGCG
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                5794006  52 -  36342412 -------------------------------------------------CTTTGGGTGCTGTGTTAATG-----------------------------GGG---------------------------TGCTGGTG------GGACCACTGCTCCCTAGGtca---
i otoGar3.GL873530               C 0 C 0
s dasNov3.JH579681                 860503 161 +   1727078 ACTCCTTGGGAATTGAGACCCAGAAA-----CAGGATCTGAAGTTGACCCAGTCAGCAGCCAGGGCCTGTCCCAGGACTTGCCCAAGAGGAGGAGACGGGGAGGGGGAACAGAGGCGCCCACCATGGTAGCAGGAGTGATGTGCCCAGCTGCTCTTCAACTTCCCA
i dasNov3.JH579681               C 0 C 0
e canFam3.chr3                   58224219 200 +  91889043 I
e colAng1.NW_012114844v1          4037986 7827 +   5013933 I
e panTro5.chr15                  59832338  58 +  83230942 I

a score=867617.000000
s hg38.chr15_KI270850v1_alt         46249 178 +    430880 TGCTCACCtcatttca-caccaacacgccccattctcagaggaggagcccaaggccctaagagg---aagtaactggccc------------------------------------------------------------------------------------------aaggacacatgccctagtgacacagGCCCATCCTAGGCGCCG--ACTGCCCACCTCCA----AGTTCCAGGC-CACTCTGAGCAGGTGAAAGAGGGAGAGGGCC------CCAAG
s panPan2.chr15                  23072441 178 -  99763055 TTCTCACCTCATTTCA-CACCAACAAGcccgatcctcagaggaggaacccaaggctctgagagg---aagtacctggccc------------------------------------------------------------------------------------------aagggcacatgccctggtgacacaggcccatcctaggcttca--actgcccacctcca----agctccagGC-CACCCTGAGCAGGTGGAAGAGGGAGAGGGCC------CCAAG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           337546 178 -    378907 TGCTCACCTCATTTCA-CAccaacacgccccattctcagaggaggagcccaaggctctaagagg---aagtaactggccc------------------------------------------------------------------------------------------aaggacacatgccctagtgacacagGCCCATCCTAGGCGCCG--ACTGCCCACCTCCA----AGTTCCAGGC-CACCCTGAGCAGGTGAAAGAGGGAGAGGGCC------CCGAG
i gorGor5.CYUI01015946v1         C 0 C 0
s rheMac8.chr7                   60003051 161 + 169600520 TGCTCAACTCATTTCA-CAccaacatgccccatcctcagaggaggagcccaaggctctgagaag---aagtaactggccc------------------------------------------------------------------------------------------aagggcgcaTGCCCTGCTGACACAGGCCCATCCTAGGCTCCA--ACTG---------------------------CCCTGAGCAGGTGGAA-AGGGAGAGGAACGGCCCGCCAGG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61605150 178 + 171882078 TGCTCACCTCATTTCA-CAccaacacaccccatcttcagaggaggagcccaaagctctgagagg---aagtaactggccc------------------------------------------------------------------------------------------aagggcacatgccttgatgacacagtcaattcctaggctctg--actgcccacctcca----agttccagGC-CACCCTAAGCAGGTGGAAGAGGGAGAGGGCC------CCAAG
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3928320 178 +   4820037 TGCTCACCTCGTTTCA-CAccaacacaccccatcctcagaggaggagcccaagtctctgagagg---aagtaattggccc------------------------------------------------------------------------------------------aagggcacaTGCCCTGCTGACACAGGCCCATCCTAGGCTCTG--ACTGTCCACCTCCA----AGCTCCAGGC-CACCCTGAGCAGGTGGAAGAGGGAGAGGGCC------CCGAG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9790868 178 +  10730278 CGCTCACCtcatttca-cgccaacacaccccatcctcagaggaggagaccaaggctctgagagg---aagtaattggccc------------------------------------------------------------------------------------------aagggcacatgccctggtgacacaggctcatcctaggctctg--actgcccacctcca----agctcCAGGC-CACCCTGAGCAGGTGGAAGAGGGAGAGGGCC------CCGAG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1332850 178 +  24206276 TGCTCACCTCATTTCA-CAccaacacaccccatcctcagaggaggagcctaaggctctgagagg---aagtaactggccc------------------------------------------------------------------------------------------aagggcacatgccttgatgacacagtcaattcctaggctctg--actgcccacctcca----agttccagGC-CACCCTAAGCAGGTGGAAGAGGGAGAGGGCC------CCAAG
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3932243 178 +   4030761 CACTCACCtcatttca-caccaacacaccccatcctcagaggaggagcccaaggctctgagagg---aagtaattggccc------------------------------------------------------------------------------------------aagggcacatgccctgctgacacaggcccatcctaggctcca--actgcccacctcca----agctccagGC-CACCCTGAGCAGGTGGAAGAGGGAGAGGGCC------CCGAG
i manLeu1.NW_012102632v1         C 0 C 0
s saiBol1.JH378378                 100801 176 -    125141 TGCTCACCTCATCTga-caccaata-gccccatcctcagaggaagagcccgaggctctgagagg---aagtaactgggcc------------------------------------------------------------------------------------------aaacccacatgccctggtgacacaggc-catcctaggccccg--actgctcacctcca----agctctagGC-CACCCTGAGCGGGTGGAAGAAGGAGCAGGCC------CTGAC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1           106008 176 +  11725426 TGCTCACCtcgtctga-caccaaca-gccccatcctcagaggaggggcccgaggctctgagagg---aagtaactggccc------------------------------------------------------------------------------------------aaggccacatgccctggtgacacaggc-catcctaggcccca--actgctcacctcca----atcTCTAGGC-CACCCTGAGCGGGTGGAAGAAGGAGTGGGCT------CTGAC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1           699255 176 +    730879 TGCTCACCTCATCTGA-Caccaaca-gccccatcctcaggggaggagcccaaggctctgagagg---aagtaactggccc------------------------------------------------------------------------------------------aaagccacatgccctggtgacacaggc-catcctaggccccg--actgctcacctcca----agctctagGC-CACCCTGAGCAGGGGGAAGAAGGAGCGGGCC------CTGAC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                5794058 148 -  36342412 cacacccctcagtgaagcatcagtacactctgttttcagatgagaagtccaaggctctgtgagaggcaagtgactGGTGC------------------------------------------------------------------------------------------ATAGGCATGTGCACTGGTGACGAAAGCCCAGTCTAGGCCATG--CGCCCCCATCTCCT----GTTTGGAG-----CTCT------------------------------------
i otoGar3.GL873530               C 0 C 0
s dasNov3.JH579681                 860664 255 +   1727078 CTCACACCTCATCT---CATTAGGATGCCCCATTTTCCGATGAGAAGCCTGAGGCC--GAGAAG---GGGGCACATGCCCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGATGCCCATTTCCGATGAGAAGCTGAGGCCGAGAAGGGGCACATGCCT--GTGAT----GCCTAGCTTGCGCCCCATCTCTGCTGAACTCTGGAGTACCTGCAGCCGCCCTCTGAGCAGGCAGA----------GTGC------CTGAG
i dasNov3.JH579681               C 0 C 0
e canFam3.chr3                   58224219 200 +  91889043 I
e colAng1.NW_012114844v1          4037986 7827 +   5013933 I
e nomLeu3.chr6_GL398151_2_random    19757 5785 -     28805 I
e panTro5.chr15                  59832338  58 +  83230942 I

a score=50213.000000
s hg38.chr15_KI270850v1_alt         46427 11 +    430880 CAGGCCC-CA-GC
s panPan2.chr15                  23072619 11 -  99763055 CAGGTCC-CA-GT
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           337724 11 -    378907 CAGGCCC-CA-GC
i gorGor5.CYUI01015946v1         C 0 C 0
s rheMac8.chr7                   60003212 12 + 169600520 CAGGCCC-CAGGC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61605328 11 + 171882078 CAGGCCG-CA-GC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3928498 11 +   4820037 CAGGCCC-CA-GC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9791046 11 +  10730278 CAGGCCC-CA-GC
i cerAty1.NW_011999477v1         C 0 I 4684
s chlSab2.chr29                   1333028 11 +  24206276 CAGGCCG-CA-GC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3932421 11 +   4030761 CAGGCCC-CA-GT
i manLeu1.NW_012102632v1         C 0 C 0
s saiBol1.JH378378                 100977 11 -    125141 TGGGTCC-CA-GT
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1           106184 11 +  11725426 CGGGTCC-CA-GT
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1           699431 11 +    730879 CAGGTCC-CA-GT
i aotNan1.NW_018503093v1         C 0 C 0
s canFam3.chr3                   58224419 10 +  91889043 CAGGCCC-CA-T-
i canFam3.chr3                   I 200 C 0
s dasNov3.JH579681                 860919 10 +   1727078 CAGGCCCACA---
i dasNov3.JH579681               C 0 C 0
e otoGar3.GL873530                5794206  0 -  36342412 C
e colAng1.NW_012114844v1          4037986 7827 +   5013933 I
e nomLeu3.chr6_GL398151_2_random    19757 5785 -     28805 I
e panTro5.chr15                  59832338 58 +  83230942 I

a score=1042297.000000
s hg38.chr15_KI270850v1_alt         46438 204 +    430880 TATGGCTTTGCACAGAGAGGGCAGCCTGCCAGAGTTCACGCAGGAAAGCAAGTTCCTGGGAAGGCTAGCGTGAGTCCCAGCCCCGCTGTGCTGA-CCGAGGGTGGAGGAGCGTCAGACGTGCTTCCTGTC--TGTCTGCAGCAGCCAGGCTGGCCCAGCAAGA-CCTGGGGACCCACGCTCTGAGTCATGGGTTCCCAGGCCTTAGTC
s panPan2.chr15                  23072630 205 -  99763055 GGTGGCTTTGCACAGAGAGGGCAGCCTGCCAGAGTTCACGCAGGAAAGCAAGTTGCCGGGCAAGCTAGCGTGAGTCCCAGCCCCGCTGTGCTGC-CCGAGGGTGGAGGAGCCTCAGGCGTGCTTCCTGTC--TGTCTGCAGCAGCCCGGCTGGCCCAAAGAGACCCTGGGGACCCACGCTCTGAGTCACGGCTTCCCAGGCCTTAGTC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           337735 204 -    378907 TATGGCTTTGCACAGAGAGGGCAGCCTGCCAGAGTTCACGCAGGAAAGCAAGTTGCTGGGAAGGCTAGCGTGAGTCCCAGCCCCGCTGTGCTGA-CCGAGGGTGGAGGAGCGTCAGGCGTGCTTCCTGTC--TGTCTGCAGCAGCCAGGCTGGCCCAGCAAGA-CCTGGGGACCCACGCTCTGAGTCATGGGTTCCCAGGCCTTAGTC
i gorGor5.CYUI01015946v1         C 0 C 0
s rheMac8.chr7                   60003224 192 + 169600520 TGGGGCTTTGCACAGAGA-GGCAGCCTGCCAGAGTTCACACAGGAAAGCAAGTTGCTGGGCAAGCTAGCGTGATTCCCAGCCCCGCTGCACTGC-CCAAGGGTGGAGGAGTGTCAGGCGTGCTTCCTGTC--TGTCTACAGCAGCCTGGCTGGCCCAAAGAGACCCTGGG------------AAGTCATGGCTTCCCAGGCCTTAGTC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61605339 205 + 171882078 TGTGACTTTGCATAGAGAGGGCAGCCTGCCAGAGTTCACTCAGGAAAGCAAGTCGCTCAGCAAGCTAGCATGAGTCCCAGCCCCGCTGTGCTGC-CTGAGGTTGGAGGAGCGTCAGACGTGCTTCCTATC--TGTCTGCAGCAGCCCGGCTGGCCCAAAGAGACTCTGGGGACCCATGCTCTGAGTCATGGCTTCCCAGGCCTTAGTC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3928509 204 +   4820037 GGCGGCTTTGCACAAAGCGGGCAGCCTGCCAGAGTTCACGCAGGAAAGCAAGTTGCTGGGCAAGCTAGCGTGAGT-CGAGCCCCGCTGCGCTGC-CCGCGGGTGGAGGAGCGTCAGGAGTGCTTCCTGTC--TGTCTACAGCAGCCCGGCTGGCCCAAAGAGACCCTGGGGACCCATGCTCTGAGTCATGGCTTCCCGGGCCTTAGTC
i macNem1.NW_012011533v1         C 0 I 5295
s chlSab2.chr29                   1333039 205 +  24206276 TGTGACTTTGCATAGAGAGGGCAGCCTGCCAGAGTTCACGCAGGAAAGCAAGTCGCTCAGCAAGCTAGCATGAGTCCCAGCCCCGCTGTGCTGC-CTGAGGTTGGAGGAGCGTCAGACGTGCTTCCTATC--TGTCTGCAGCAGCCCGGCTGGCCCAAAGAGACTCTGGGGCCCCATGCTCTGAGTCATGGCTTCCCAGGCCTTAGTC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3932432 204 +   4030761 GGCAGCTTTGCACAAAGTGGGCAGCCTGCCAGAGTTCACGCAGGAAAGCAAGTTGCTGGGCAAGCTAGCGTGAGT-CCAGCCCCGCTGCGCTGC-CCGCGGGTGGAGGAGCGTCAGGAGTGCTTCCTGTC--TGTCTACAGCAGCCCGGCTGGCCCAAAGAGACCCTGGGGACCCATGCTCTGAGTCATGGCTTCCCAGGCCTTAGTC
i manLeu1.NW_012102632v1         C 0 C 0
s saiBol1.JH378378                 100988 207 -    125141 GGTGGCTTTGCACAGAGAGGGCAGCCTGCCAGAGGTCATGCAGGAAAGCAAGTCACTCAGCAAGCTAGTGTAAGTCCCGGCCCCGCTGCGCAGC-CCGAGGGTGGAGGAGCATCAGGCGTGCTTCCTGTCTGTGTCTGCAGCAGCCTGGCTGGCCCAAAGAGACCCTGGGGACCCATGCTCTGAGTCATGGCTTCCCAGGTCTTAGTC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1           106195 207 +  11725426 GGTGGCTTTGCACAGAGAGGGCAGCCTGCCAGAAGTCACACAGGAAAGCACGTCATTCGGCAAGCTAGCGTGAGTCCCAGCCCCGCTGCGCAGC-CCGTGGGTGGAGGAGCATCAGGCGTGCTTCCTGTCTGTGTCTGCAGCAGCCTGGCTGGCCCAAAGAGACCCTGGGGACCCACGCTCTGAGTCATGGCTTCCCAGGTCTTAGTC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1           699442 206 +    730879 GGTGGCTTTGCACAGAGAGTGCAGCCTGCCAGAGGTCACGCAGGAAAGCAAGTCACTCAGCAAGCTAGCGTGAGTCCCGGCCCCGCTGCGCAGC-CCGAGGGTGGGGGAGCGTCAGGCATGCTTCCTGTCTGTGTCTGCAGTGG-CTGGCTGGCCCAAAGAGACCCTGGGGACCCACGCTCTGAGTCATGGCTTCCCAGGTCTTAGTC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                5794206 182 -  36342412 ----------------GGGGTCAGGCTGTCATAAGGCACTCAG--AAGTGAGTCACTGGG--GGCTTACGTGAGTCCAAGCACCA----GCACC-CTGAGGGAGGAGGAGCATCAGGCTTTCATCTTGTCTGTGTATGGGGCAGCCCAGCTGGCCCAAGGAGG-CCTGGGGACCTGCATGGCAAGTAATGACCACCCAGGTCTTAGTC
i otoGar3.GL873530               C 0 C 0
s canFam3.chr3                   58224429 139 +  91889043 GGTGTCTTCACGCACAGACGGTGG---GTCTGAGGTCACTCAGGAAAGTGAGTCACCGAG---GCATGCGAGAG-------------------------GCGGGCAGGGGCATCAGA----CTTCCTG----TGTTTGCAACAGTCCTGC-GGCCTGAGGAGGCCCTGGGGACCCACGC-----------------------------
i canFam3.chr3                   C 0 C 0
s dasNov3.JH579681                 860929 206 +   1727078 AAAAGATTTGCACAGAGAGGCCGCGTGTTCAGAGGTCACTGGGGAAGGCGAAAGACTGG--AGGCTCGCGTGCTTCCAAGCACCACTACCCTCCTCTGAGGGCAGAGGAGCGTCAGGCTTGCTTCCTGTCTGGGTTTGCAGGAGCCCAGCTGGCCCACGGGAGCCGTAGGGACCCACACTCTGAGTAACAGCTTCCCAGGGCTTGGCT
i dasNov3.JH579681               C 0 C 0
e colAng1.NW_012114844v1          4037986 7827 +   5013933 I
e cerAty1.NW_011999477v1          9791057 4684 +  10730278 I
e nomLeu3.chr6_GL398151_2_random    19757 5785 -     28805 I
e panTro5.chr15                  59832338  58 +  83230942 I

a score=177956.000000
s hg38.chr15_KI270850v1_alt         46642 49 +    430880 AGAACTGCCCC----TGGTGGCAG----TCCCTTCCAAGGGGTAAGGAGC-AGGGCCT
s panPan2.chr15                  23072835 49 -  99763055 AGAACGGCCCC----TGGTGGCAC----TCCCTTCCAAGGGGTGGGGAGC-AGGGCCT
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           337939 49 -    378907 AGAACTGCCCC----TGGTGGCAG----TCCCTTCCAAGGGGTAAGGAGC-AGGGCCT
i gorGor5.CYUI01015946v1         C 0 C 0
s rheMac8.chr7                   60003416 49 + 169600520 AGAACT--GCCCG--TGGTGGCAA----TCCCTTCCAAGGGGTGGGGAGC-AGGGCCT
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61605544 53 + 171882078 AGAACTAAGTCAGAAGGGTGGCAG----TCCCTTCCAAGGGGTGGGGAGC-AGGGCCT
i macFas5.chr7                   C 0 C 0
s chlSab2.chr29                   1333244 53 +  24206276 AGAACTAAGTCAGAAGGGTGGCAG----TCCCTTCCAAGGGGTGGGGAGC-AGGGCCT
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3932636 49 +   4030761 AGAACTGCCCC----TGGTGGCAG----CCCCTTCCAAGGGGTGGGGAGC-AGAGCCT
i manLeu1.NW_012102632v1         C 0 C 0
s saiBol1.JH378378                 101195 48 -    125141 AAAACTGCCCC----TGGTGGCAA----CCCCTTCCAAGAGGTGGGGAGC-AGGG-CT
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1           106402 48 +  11725426 AAAACTGCCCC----TGGTGGCAA----CCCCTTCCAAGGGGTGGGGAGC-AGGG-CT
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1           699648 48 +    730879 AAAACTGCCCC----TGGTGGCAA----CCCCTTCCAAGGGGTGGAGAGC-AGGG-CT
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                5794388 45 -  36342412 AAAACCAGCCT----CAGCAGCAG----CCCCTTACAAATGG----GAGC-AAAGCCT
i otoGar3.GL873530               C 0 C 0
s canFam3.chr3                   58224568 45 +  91889043 ---ACTGTCCA----CTGCAGCAG-----CCCTTACAAGGAAGGGGGAAG-GGGGCCT
i canFam3.chr3                   C 0 N 0
s dasNov3.JH579681                 861135 45 +   1727078 -------------AGTTGTGGCAGCAAATGCCTTATAAAGGATGGGGAACTAGGGCCT
i dasNov3.JH579681               C 0 I 2
e colAng1.NW_012114844v1          4037986 7827 +   5013933 I
e cerAty1.NW_011999477v1          9791057 4684 +  10730278 I
e macNem1.NW_012011533v1          3928713 5295 +   4820037 I
e nomLeu3.chr6_GL398151_2_random    19757 5785 -     28805 I
e panTro5.chr15                  59832338 58 +  83230942 I

a score=78111.000000
s hg38.chr15_KI270850v1_alt         46691 17 +    430880 GTCGACTT-----GCTCCTGAC
s panPan2.chr15                  23072884 17 -  99763055 GTCGACTT-----GCTCCTGAC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           337988 17 -    378907 GTCGACTT-----GCTCCTGAC
i gorGor5.CYUI01015946v1         C 0 C 0
s rheMac8.chr7                   60003465 17 + 169600520 GCTGACTT-----GCCTCTGAC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61605597 17 + 171882078 GTTGACTT-----GCTTCTGAC
i macFas5.chr7                   C 0 C 0
s chlSab2.chr29                   1333297 17 +  24206276 GTTGACTT-----GCTCCTGAC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3932685 17 +   4030761 GTCGACTT-----GCTCCTGAC
i manLeu1.NW_012102632v1         C 0 C 0
s saiBol1.JH378378                 101243 17 -    125141 GTTGACTT-----GCTCCTGAC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1           106450 17 +  11725426 GTTGACTT-----GCTCCTCAC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1           699696 17 +    730879 GTTGACTT-----GCTCCTGAC
i aotNan1.NW_018503093v1         C 0 C 0
s otoGar3.GL873530                5794433 17 -  36342412 GTTTATAT-----GCTCCTGAC
i otoGar3.GL873530               C 0 N 0
s dasNov3.JH579681                 861182 22 +   1727078 GTTTACCTGCCTGGCTCCAGAC
i dasNov3.JH579681               I 2 C 0
e colAng1.NW_012114844v1          4037986 7827 +   5013933 I
e cerAty1.NW_011999477v1          9791057 4684 +  10730278 I
e macNem1.NW_012011533v1          3928713 5295 +   4820037 I
e nomLeu3.chr6_GL398151_2_random    19757 5785 -     28805 I
e panTro5.chr15                  59832338 58 +  83230942 I

a score=56207.000000
s hg38.chr15_KI270850v1_alt         46708 13 +    430880 CCACACACTGAAC
s panPan2.chr15                  23072901 13 -  99763055 CCACACACCGAGC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           338005 13 -    378907 CCACACACTGAAC
i gorGor5.CYUI01015946v1         C 0 C 0
s rheMac8.chr7                   60003482 13 + 169600520 CCACACACTGAGC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61605614 13 + 171882078 CCACACACTGAGC
i macFas5.chr7                   C 0 C 0
s chlSab2.chr29                   1333314 13 +  24206276 CCACACACTGAGC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3932702 13 +   4030761 CCACACACTGAGT
i manLeu1.NW_012102632v1         C 0 C 0
s saiBol1.JH378378                 101260 13 -    125141 CCACACACTGAGC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1           106467 13 +  11725426 CCACCCACCGAGC
i cebCap1.NW_016107334v1         C 0 C 0
s aotNan1.NW_018503093v1           699713 13 +    730879 CCACACACCGAGC
i aotNan1.NW_018503093v1         C 0 C 0
s dasNov3.JH579681                 861204 13 +   1727078 CCACACCCTTAGC
i dasNov3.JH579681               C 0 N 0
e colAng1.NW_012114844v1          4037986 7827 +   5013933 I
e cerAty1.NW_011999477v1          9791057 4684 +  10730278 I
e macNem1.NW_012011533v1          3928713 5295 +   4820037 I
e nomLeu3.chr6_GL398151_2_random    19757 5785 -     28805 I
e panTro5.chr15                  59832338 58 +  83230942 I

a score=5702.000000
s hg38.chr15_KI270850v1_alt         46721 5 +    430880 CAGTC
s panPan2.chr15                  23072914 5 -  99763055 CAGTC
i panPan2.chr15                  C 0 I 7477
s gorGor5.CYUI01015946v1           338018 5 -    378907 CAGTC
i gorGor5.CYUI01015946v1         C 0 C 0
s rheMac8.chr7                   60003495 5 + 169600520 CAGTC
i rheMac8.chr7                   C 0 I 7292
s macFas5.chr7                   61605627 1 + 171882078 C----
i macFas5.chr7                   C 0 C 0
s chlSab2.chr29                   1333327 2 +  24206276 CT---
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3932715 5 +   4030761 CAGTC
i manLeu1.NW_012102632v1         C 0 C 0
s saiBol1.JH378378                 101273 5 -    125141 CAGTC
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107334v1           106480 5 +  11725426 CAGTC
i cebCap1.NW_016107334v1         C 0 N 0
s aotNan1.NW_018503093v1           699726 5 +    730879 CAGTC
i aotNan1.NW_018503093v1         C 0 C 0
e colAng1.NW_012114844v1          4037986 7827 +   5013933 I
e cerAty1.NW_011999477v1          9791057 4684 +  10730278 I
e macNem1.NW_012011533v1          3928713 5295 +   4820037 I
e nomLeu3.chr6_GL398151_2_random    19757 5785 -     28805 I
e panTro5.chr15                  59832338 58 +  83230942 I

a score=4500.000000
s hg38.chr15_KI270850v1_alt         46726 1 +    430880 C
s panTro5.chr15                  23372480 1 -  83230942 C
i panTro5.chr15                  I 13939 C 0
s panPan2.chr15                  23080396 1 -  99763055 C
i panPan2.chr15                  I 7477 C 0
s gorGor5.CYUI01015946v1           338023 1 -    378907 C
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    25542 1 -     28805 C
i nomLeu3.chr6_GL398151_2_random I 5785 C 0
s rheMac8.chr7                   60010792 1 + 169600520 C
i rheMac8.chr7                   I 7292 C 0
s manLeu1.NW_012102632v1          3932720 1 +   4030761 C
i manLeu1.NW_012102632v1         C 0 C 0
s saiBol1.JH378378                 101278 1 -    125141 C
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107979v1             7863 1 -   1024465 C
i cebCap1.NW_016107979v1         N 0 C 0
s aotNan1.NW_018503093v1           699731 1 +    730879 C
i aotNan1.NW_018503093v1         C 0 C 0
e colAng1.NW_012114844v1          4037986 7827 +   5013933 I
e chlSab2.chr29                   1333329 0 +  24206276 C
e cerAty1.NW_011999477v1          9791057 4684 +  10730278 I
e macNem1.NW_012011533v1          3928713 5295 +   4820037 I
e macFas5.chr7                   61605628 0 + 171882078 C

a score=13338.000000
s hg38.chr15_KI270850v1_alt         46727 2 +    430880 CT
s panTro5.chr15                  23372481 2 -  83230942 CT
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                  23080397 2 -  99763055 CT
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           338024 2 -    378907 CT
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    25543 2 -     28805 CT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60010793 2 + 169600520 CT
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61605628 1 + 171882078 -T
i macFas5.chr7                   C 0 C 0
s cerAty1.NW_011999477v1          9795741 2 +  10730278 CT
i cerAty1.NW_011999477v1         I 4684 C 0
s manLeu1.NW_012102632v1          3932721 2 +   4030761 CT
i manLeu1.NW_012102632v1         C 0 I 4574
s colAng1.NW_012114844v1          4045813 2 +   5013933 CT
i colAng1.NW_012114844v1         I 7827 C 0
s saiBol1.JH378378                 101279 2 -    125141 CT
i saiBol1.JH378378               C 0 C 0
s cebCap1.NW_016107979v1             7864 2 -   1024465 CT
i cebCap1.NW_016107979v1         C 0 C 0
s aotNan1.NW_018503093v1           699732 2 +    730879 CT
i aotNan1.NW_018503093v1         C 0 N 0
e chlSab2.chr29                   1333329 0 +  24206276 C
e macNem1.NW_012011533v1          3928713 5295 +   4820037 I

a score=11264.000000
s hg38.chr15_KI270850v1_alt         46729 2 +    430880 AG
s panTro5.chr15                  23372483 2 -  83230942 AG
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                  23080399 2 -  99763055 AG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           338026 2 -    378907 AG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    25545 2 -     28805 AG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60010795 2 + 169600520 AG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61605629 2 + 171882078 AG
i macFas5.chr7                   C 0 C 0
s cerAty1.NW_011999477v1          9795743 2 +  10730278 AG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1333329 2 +  24206276 AG
i chlSab2.chr29                  C 0 C 0
s colAng1.NW_012114844v1          4045815 2 +   5013933 AG
i colAng1.NW_012114844v1         C 0 C 0
s saiBol1.JH378378                 101281 2 -    125141 GG
i saiBol1.JH378378               C 0 N 0
s cebCap1.NW_016107979v1             7866 2 -   1024465 AG
i cebCap1.NW_016107979v1         C 0 C 0
e manLeu1.NW_012102632v1          3932723 4574 +   4030761 I
e macNem1.NW_012011533v1          3928713 5295 +   4820037 I

a score=616213.000000
s hg38.chr15_KI270850v1_alt         46731 147 +    430880 GAACATCATCCTGGG-CATGCCATACCTGTCGTGCAGTCTCAGTCATGCTGCCAGGGCAGG-TATCCAGCTCCCAG----CCTGGGAGTGCTGAGAGCCAAATCCACTGCAAAGCAGGGCTGATAGTCAGGGCCCCACCTCATCTATCTGTCG
s panTro5.chr15                  23372485 148 -  83230942 GAACATCATCCTGGG-CACGCCGTACCTGTTGTGCAGTCTGAGTCATGCTGCCAGGTCAGGGTATCCAGCTCCCAG----CCTGGGAGTGTCAAGAGCCAAATCCACTGCAGAGCAGTGGTGATAGTCAGGGTCCCACCTCATCTATCTGTCG
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                  23080401 148 -  99763055 GAACATCATCCTGGG-CACGCCGTATCTGTTGTGCAGTCTGAGTCATGCTGCCAGGTCAGGGTATCCAGCTCCCAG----CCTGGGAGTGTCAAGAGCCAAATCCACTGCAGAGCAGTGGTGATAGTCAGGGTCCCACCTCATCTATCTGTCG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           338028 147 -    378907 GAACATCATCCTGGG-CATGCCGTACCTGTCGTGCAGTCTGAGTCATGCTGCCAGGGCAGG-TATCCAGCTCCCAG----CCTGGGAGTGCTGAGAGCCAAATCCACTGCAAAGCAGGGGTGATAGTCAGGGTCCCACCTCATCTATCTGTCG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    25547 142 -     28805 GAACATCATCCTGGGTTTCACCATACCTGTCGTGCAGTCTGAGTCATGCTGCCAG-------TATCCAGCTCCCAG----CCTGGGAGTGCTGAGAGCCAAATCCACTGCAAAGCAGGGGTGATAGTCAAGGTCCCACCTCATCTATCTGTCG
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60010797 148 + 169600520 GAACATCATCCTGGG-CATGCCGTACCTGTCGTGCAGTCTGAGTCATGCTGCCAGTGCAGGGCATCCAGCTCCCAA----CCTGGGAGTGCCAAGAGCCAAATCCACTGCAGAGGAGGGGTGATTGTCAGGGTCCCACCTCCTCTATCTGTTG
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61605631 152 + 171882078 GAACATCATCCTGGG-CATGCCATACTTGTCGTGCAGTCTGAGTCAAGCTGCCAGGGCAGGGTATCCAGCTCCCAGCCTCCCTGGGAGTGCCGAAAGCCGAATCCACTGCAGAGCAAGGGTGATTGTCAGGGTCCCACCTTCTCTATCTGTTG
i macFas5.chr7                   C 0 C 0
s cerAty1.NW_011999477v1          9795745 148 +  10730278 GAACATCATCCTGGG-CACACCGTACCTGTTGTGCAGTCTGAGTCATGCTGCCAGGGCTGGGCATCCAGCTCCCAG----CTCGGGAGTGCCGAGAGCTGAATCCACTGCAGAGCAGGGGTGATAGTCAGGGTCCCACCTCCTCTATCTGTCG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1333331 152 +  24206276 GAACATCATCCTGGG-CATGCCGTACTTGTCGTGCAGTCTGAGTCAAGCTGCCAGGGCAGGGTATCCAGCTCCCAGCCTCCCTGGGAGTGCCGAAAGCCGAATCCACTGCAGAGCAAGGGTGATTGTCAGGGTCCCACCTTCTCTATCTGTCG
i chlSab2.chr29                  C 0 C 0
s colAng1.NW_012114844v1          4045817 148 +   5013933 GAACATCATCCTGGG-CACACCGTACCTGTCATGCAGTCTGAGTCACGCTGCCAGTGCAGGGCATCCAGCTCCCAG----CCTGGGAGTTCCGAGAGCTGAATCCACTGCAGAGCAGGGGTGATAGTCAGGGTCCCACCTCCTCTATCTGTCG
i colAng1.NW_012114844v1         C 0 C 0
s cebCap1.NW_016107979v1             7868 143 -   1024465 GAACGTCATCCTGGG-CCCGCCATGCCTGTCCTGCAGTGTGAGTCATGCTGCC-GGCCAGGGCATCCGGTTCCCAG----CCTGGGAGTGCCAAGAGCCAAATGCACTGCAGAGGAGGGGTGACAGTCAGGGTCTCACCTCCTCTGTCG----
i cebCap1.NW_016107979v1         C 0 C 0
e manLeu1.NW_012102632v1          3932723 4574 +   4030761 I
e macNem1.NW_012011533v1          3928713 5295 +   4820037 I

a score=4491495.000000
s hg38.chr15_KI270850v1_alt         46878 925 +    430880 GCAATCCAGTGGT-ATCTAG---------GTGAGAGTCCCATACACACGGTCATCCCACAACACACTCCACACTCCACAGGCCAGGCGGGGACACACAG---CCCCCTTCCCTCCCTCCCAGGTACCACCATAGCTGCTAGTGTGTGACCGAAGGCAGGGTCCCTGGCC--------CCCGCTGAATCACTATCGCCGACCAGCAGGCTCACACACCTTGGCCTGTTGCTCCTAGGGGTCGCCTGTGCTATTCAGCCAAGGGGACCACAGTGCCTGCTGGCCCAGCTGAGCTCCGCCTAGCGAGCCCACCTGCCTCTCCTGCCATGGACTCTCCCTCTTCTGCTTTTCCCAGCAGGAAGGGCCCAGCCTCACCTATGCAACCTGCAGCCCCACG--C-CCG---CCAACCAGTTGAGGCTCCCCTCTTAGACTTATAAGTCTATGGCCAGTGGCATCCAGCTACCTGCCCTCCCTGCCTTCCCCAGGGTCCCTTCAGAGGACCCTGGGATTTTGGAC--CACCCAGAGGGGCCTCTGGCACTCACTCCAGTCATCCATCCCTTATAGCTTCACCATTTTTGGTTTAAGCAGTGTTCCCTTTCTAT----CAGGCCTGGTGGCTGTTGGGTGGGGCTCCCCAA-GCAAGAGGTGGCCCTGGGCC-GTGAGTTGGAAGACAGGGTGACCAGAGAAGAGAGAAGCCCGAGGGGGCTGAGCATTCGTCTGAACTATGGGTGGACTGCCTGGGTGCCATGAAAGAGGCCAGCGTGTGTGGGGTGGGGAGGGCCGCCGCAGTCCCCAGGCACTACCTATGAAGCTCTGGCTTCTCCCTCCATCTCCCTCCCCTTTCCCTTCCAGCCCCTCTTTTCCAGGAACCTTGCCATGCCCAC-ACCTACGCCCTCCCCTCCCCGGCCCT-CCACAGCTGCTGCAGCGCACCCATACTCTGCACTTGCCTCACCA
s panTro5.chr15                  23372633 915 -  83230942 GCAATCCAGTGGCCATCTAG---------GTGAGAGTCCCATACACACGGTCATCCCACAACACACTTCACA-------GGACAGGCAGGGACAAAGAG---CCCCCTTCCCTCCCTCCCAGGTACCATCATAGCTGCTAGCGTGTGGCCGAAGGCAGGGTCCCTGGCC--------CCAACAGAAGCACTACCGCAGGCCAGCGGTCTCATGCACCTTGGCCTGTTGCTCCTAGAGGTTACCTGTGCTATTCAGCCAACGGGACCACAGTGCCTGTTGGCCCAGCTGAGCTCTGCCTAGCGAGCCCATCTGCCTTTCCTGCCACGGACTCTCACTCTTCTGCTTTTCCCAGCAGAAAGGGCCCAGCCTCACCTATGCAACCTGCAGCCCCACC--C-CCG---CCAACCAGTTGAGGCTCCCCTCTTAGACTTATAAGTCTATGGCCAGTGGCATCTGGCTACCTGCCCTCCCTGCCTTCCCCAGGGTCCCTTCAGAGGGCCCTGGGCTTTCTGAC--CACCCAGAGGGACCTCCGGCACTCACTGCAGCCGTCCATCCCTTATAGCTTCACCA-TTTTGGTTCAAGCAGTGTTCC----TTAT----CAGGCCAGGTGGCTGTTGGGTGGGGTTCCCCAA-GCAAGAGGTGGCCCTGGGCC-GTGGGTTGGAAGACAGGGTGACCAGAGAAGAGAGAAGCCCAAGGAGGCTGAGCATTGGTCTGAACTATGGTTGGACTGCCTGGGTGTCATGAGAGAGGACAGCGTGTGTGGGGTGGAGAGGACCGCCGCAGCCTCCAGGCACTACATGTGAAGCTCCGGCTCCTCCCTCCATCTTCCTCCCCTTTCCCTTCCAGCCCCTCTTTTCCAGGAACCTTGCGACACCCAC-ACCTGCACCCTCCCTTCCCCGGCCCTCCCACAGCCACTGCGGTGCACCCGTGCTCTGCACTTGTCTCACAA
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                  23080549 914 -  99763055 GCAATCCAGTGGCCATCTAG---------GTGAGAGTCCCATACACACGGTCATCCCACAACACACTTCACA-------GGACAGGCAGGGACAAACAG---CCCCCTTCCCTCCCTCCCAGGTACCATCATAGCTGCTAGCGTGTGGCCGAAGGCAGGGTCCCTGGCC--------CCAACAGAAGCACTACCGCAGGCCAGCGGTCTCATGCACCTTGGCCTGTTGCTCCTAGAGGTTACCTGTGCTATTCAGCCAACGGGACCACAGTGCCTGTTGGCCCAGCTGAGCTCTGCCTAGCGAGCCCATCTGCCTTTCCTGCCACGGACTCTCACTCTTCTGCTTTTCCCAGCAGAAAGGGCCCAGCCTCACCTATGCAACCTGCAGCCCCAC---C-CCG---CCAACCAGTTGAGGCTCCCCTCTTAGACTTATAAGTCTATGGCCAGTGGCATCTGGCTACCTGCCCTCCCTGCCTTCCCCAGGGTCCCTTCAGAGGGCCCTGGGCTTTCTGAC--CACCCAGAGGGACCTCCGGCACTCACTGCAGCCGTCCATCCCTTATAGCTTCACCA-TTTTGGTTCAAGCAGTGTTCC----TTAT----CAGGCCAGGTGGCTGTTGGGTGGGGTTCCCCAA-GCAAGAGGTGGCCCTGGGCC-GTGGGTTGGAAGACAGGGTGACCAGAGAAGAGAGAAGCCCGAGGAGGCTGAGCATTGGTCTGAACTATGGTTGGACTGCCTGGGTGTCATGAGAGAGGACAGCGTGTGTGGGGTGGAGAGGACCGCCGCAGCCTCCAGGCACTACATGTGAAGCTCCAGCTCCTCCCTCCATCTTCCTCCCCTTTCCCTTCCAGCCCCTCTTTTCCAGGAACCTTGCGACACCCAC-ACCTGCACCCTCCCTTCCCCGGCCCTCCCACAGCCACTGCGGTGCACCCGTGCTCTGCACTTGTCTCACAA
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           338175 920 -    378907 GCAATCCAGTGGT-ATCTAG---------GTGAGAGTCCCATACACACGGTCATCCCACAACACACTCCACACTCCACAGGCCAGGCGGGGACACACAG---CCCCCTTCCCTCCCTCCCAGGTACCACCATAGCTGCTAGTGTGTGACCGAAGGCAGGGTCCCTGGCC--------CC-GCTGAAGCACTATCGCCGACCAGCAGGCTCACACACCTTGGCCTGTTGCTCCTAGGGGTCGCCTGTGCTATTCAGCCAAGGGGACCACAGTGCCTGCTGGCCCAGCTGAGCTCCGCCTAGCGAGCCCACCTGCCTCTCCTGCCATGGACTCTCCCTCTTCTGCTTTTCCCAGCAGGAAGGGCCCAGCCTCACCTATGCAACCTGCAGCCCCAC---C-CCG---CCAACCAGTTGAGGCTCCCCTCTTAGACTTATAAGTCTATGGCCAGTGGCATCCGGCTACCTGCCCTCCCTGCCTT-CCCAGGGTCCCTTCAGAGGACCCTGGGATTTCGGAG--CACCCAGAGGGGCCTCTGGCACTCACTCCAATCATCCATCCCTTATAGCTTCACCATTTTTGGTTCAAGCAGTGTTCCCTTTCTAT----CAGGCCTGGTGGCTGTTGGGTGGGGCTCCCCAA-GCAAGAGGTGGCCCTGGGCC-GTGAGTTGGAAGACAGGGTGACCAGAGAAGAGAGAAGCCCGAGGGGGCTGAGCATTCATCTGAACTATGGGTGGACTGCCTGGGTGCCATGAAAGAGGCCAGCGTGTGTGAGCTGG-GAGGGCCGCCGCAGCCCCCAGGCACTACCTATGAAGCTCCGGCTTCTCCCTCCATCGTCCTCCCCTTTTCCTTCCAGGCCCTCTTTTCCAGGAACCTTGCCATG-CCAC-ACCTACGCCCTCCCCTCCCTGGCCCT-CCACAGCTGCTGCAGCGCACCCATACTCTGCACTTGCCTCACCA
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    25689 910 -     28805 GCAATCCAGTGGTGATCTAG---------GTGAGAGTCCCATACACACGGTCATCCCACAACACACTTCACA-------GGCCAGGCAGAGACACACAG---CCCCCTTCCCTCCCTCCCAGGTACCATCATAGCTGCTAGCATGTGACTGAAGGCAGGGTCCCTGGCC--------CCCACTGAAGCACTACCGCTGGCCAGCAGGCTCACCCACCTTGGCCTGTTGCTCCTAGAGGTCGCCTGTGCTATTCAGCCAACAGGACCACAGTGCCTGCTGGCCCAGCTGAGCTCTGCCTAGCAAGCCTGCCTGCGTTTCCTGCCACGGACTTTCTCTCTTCTGCTTTTCCCAGCAGGAAGGG-CCAGCCTCACCTATGCAACGTGCAGCCC------C-CTG---CCAACCAGGTGAAGCTCCCCTCTTAGACTGACAAGTCTATGGCCAGTGGCATCTGGCTACCTGCACTCCCTGCCTTCCCCAGGCTCCCTTCAGAGGGCCCTAGGCTTTCTGAC--CACTCAGAGGGGCCTCTGGCACTCACTGCAGCCGTCCATCCCTTATAGCTTCACCA-TTTTGGTGCAAGCAGTGTTCC----TTAC----CAGGCCAGGTGGCTGTTGGGTGGGGTTCCCCAA-GCAAGAGGTGGCCCTGGGCC-ATGGGTTGGAAGACAGAGTGACCAGAGAAGAGAGAAGCCTGAGGAGGCTGAGCATTGGTCTGAACTATGGGTGGACTGCCTGGATGTCATGAGAGAGGCCAGCGTGTGTGGGCTGGGGAGGGCCGCTGCAGTCCCCAGGCACTACATGTGAAGCTCTGGCTCCTCCCTCCATCTTCCTCCCCTTTCCCTTCCAGTCCCTCTTTTCCAGGAACTTTGccacacccac-acctgcacccgcccctccccaaccctcccacagccacTGCGGTGCACCGGTGCTCTGCACTTGCCTCACCA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60010945 907 + 169600520 GCAATCCAGTGGCGATCTAG---------GTGAGAGTCCCATGCACATGGTCATCCCACAACACACTCCACA-------GGCCAGGCAGGGACACACAG---CCCCCTTCCCTCTCTCCCAGGTACCATCATAGCTGCTAGCATGTGACCAAAGGCAGGGTCCCTGGCC--------CCCACTGAAGTACTACAACTGGCCAGCGGGCTCACGCACCTTGGTCTGTTGCTCCTAGGGGCCACCTGTGCTATTCAGCCAAGGGGACCACAGTGCCTGCTGGCCCAGCTGAGCTCTACCTAGTAAGCCTGCATGCCACTTCTGCCACAGACTCTCCCTCTTCTGCTTTTCCCAGCAGGAAGGGCCCAACCTCACCTATGCAACCTGCAGCCC------CTTCGAGCCCAACTAATTGAGGCTCCCCTCTTAGATTTATAAGTCTATGGCCAGTGGCATCCAGCTACCTCTCCTCCCTGCCTTCCCCAGGCTCCCTTCAGAGGGCCCTAGGCTTTCTGACTGCACAGAGAGAGGCCTCTGGCACTCATTCCAGCCATCCATCCCTTATAGCTTCACCA-TTTTAGTTCAAGCAGTGTTCC----TTCTCTATCAGGCCTGGTGGTTGTTGGGTGGGGTTCCCCAA-GCAAGATGTGGCCCCGGGCC------ATGGTGACCAGGGTGACCAGAGAAGAAAGAAGCCCAAGGGAACTGAGCATTGGTCTGAACTGTGGGTGCACTGCCTGGATGCCATGGGAGAG----GCATGTGTGGAGTGTGGAGGGCCGCTGTAGCCCCCAAGCACTACCTGTGAAGCTCCGGGTCCTCCCTCCATCTTCCTCCCCTTTCACTTCCAGCCCCTCTTTTCCAGGATCCTTGCCAAACCCGC-ACCTACGCCCTTCCCTCCCTGGCCCTCCCACAGCTCCTG-----CACCAGTGCTCTGTGCTTGCCTCACCA
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61605783 917 + 171882078 GCACTCCAGTGGCGATCTAG---------GTGAGAGTCCCATGCACACGGTCATCCCACAACACACTCCACA-------GGCCAGGTAAGGACACACAG---CCCCCTTCCCTCTCTCCCAGGTACCATCATAGCTGCTAGCGTGTGACCAAAGGCACGGTCCCTGGCC--------CCCACTGAAGCATTACCACTGGCCAGTGGGCTCACACACCTTGGTCTGTTGCTCCTAGAGGTCGCCTGTGCTATTCAGCCAAGGAGACCACAGTGCCTGCTGGCCCAGCTGAGCTCCACCTAGTGAGCTCACCTGCCTGTCCTGCCATGGACTCTCCCTCTTCTGCTTTTCCCAGCAGGAAGGGCCTAGCCTCACCTATGCAACCTGCAGCCC------CTCCA---CCAACCAGTCGAGGCTCCCCTCTTAGACTTATAAGTCTATGGCCAGTGGCATCTGGCTGCCTGCCCTCCCTGCCTTCCCCAGTGTCCCCTCAGAGGACCCTGGGCTTTCAGAC--CACACAGAGGGGCCTCTGGCGCTCACTCCAGTCATCCATCCCTTATAGCTTCGCCA-TTTTGGTCCAAGCAGCACCCC----TTCTCTAACAAGCCTGGTGGCTGTTGGGTGGGGCTCCCCAA-GCAAGAGGTGGCCCAGAGCC-GTGGGTTGGAAGACAGGGTGACCAGAGAAGGGAGAAACCCAAGAGGGCTGAGCATTGGTCTGAACTATGGGTGCACTGCCTGGGTGCCTTGGGAGAGGCCAGCGTGTGTGGGGTGGAGATGGCTGCCACAGCCCCCAGGCACCGCCTAAGAAGCTTCAGCTTCTCCCTCTATCTTCCTCCCCTTTCCCTTCCAGTCCTTGTGTTCCAGGAACCTTGCCACACCCGCAACCTGCGCCCTTCCCTCTCCAGCCCTCCCACAGCTGCTGCAGCATACCACTGCTTTGCGCTTGCCTCACCA
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3934008 906 +   4820037 GCAATCCAGTGGCGATCTAG---------GTGAGAGTCCCACACACACGGTCATCCCACAACACACTCCACA-------GGCCAGGCAGGGACACACAGCCACCCCCTTCCCTCCCTCCCAAGTGCCATCATAGCTGCTATTGTGTGACCAAAGGCAGGGTCCCTGGCC--------CCCACTGAAGCACTACCACTGGCCAGCGGGCTCACGCGCCTTGGCCTGTTGTTCCTAGAGGTTGTCTGTGCTATTCAGCCAATGGGACCACAGTG---------CCAGCTGAGCTCCGCCTAGCGGGCCCAGCTGCCTTTCCTGCCACGGACTCTCCCTCTTCTGCTTTTCCCAGTCGGAAGGGCCCAGCTTCACCTATGCAACCTGCAGCCC------C-CCA---TCAACCAGTTGAGGCTCCCCTCATAGATTTATAAGTCTATGGCCAGTGGCATCCGGCTACCTGCCCTCCCTGCCTTCCCCAGGCTCCCTTCAGAGGGCCCTGGTCTTGCTGAC--CACCCAGAGGGGCCTCTGGCACTCACTCCAGCCATCCATCCCTTATAGCTTCACTA-TTTTGGTTCAAGCAGTGTTCC----TTAT----CAGGCCAGTTGGCTGTTGGGTGGGGCTCCCCAA-GCAAGAGGTGGCCCTGGGCCAGTGAGTTGGAAGACAGGGTGACCAGAGAAGAGGGAAGCCCAAGGGGGCTGAGCATTGGTTTGAACTATGGGTGCACTTCCTGGGTCCCATGAGAGAGGCCAGCGTGTGTGGGCTGCAGAGGGCAGCCACATCCCCCAGGCACCACCTGTGAAGCTCTGGCTCCTCCCTCTATCTTCCTCCCCTTTCCCTTCCAGCCCCTCTTTTCTAGGAACCTTGCCACACCCAC-ACCTGTGCCCTCCCCTCCCCAGCCCTCCCACAGCTGCTGTGGCTCGCCCATGCTCTGCACTTGCCTCACCA
i macNem1.NW_012011533v1         I 5295 I 108
s cerAty1.NW_011999477v1          9795893 899 +  10730278 GCAATCCAGTGGCGATCTAG---------GTGAGAGTCCCACACACACGGTCATCCCACAACACACTCCACA-------GGCCAGGCAGGGACACACAG---CCCCCTTCCCTCCCCCCCAAGTGCCATCATAGCTGCTATTGTGTGACCAAAGGCAGGGTCCCTGGCC--------CCCACTGAAGCACTACCACTGGCCAGCGGGCTCACGCACCTTGGCCTGTTGTTCCTAGAGGTTGCCTGTGCTATTCAGCCAATGGGACCACAGTG---------CCAGCTGAGCTCCGCCTAGCGAGCCCACCTGCCTTTCCTGCCACGGACTCTCCCTCTTCTGCTTTTCCCAGTAGGAAGGGCCCAGCTTCACCTATGCAACCTGCAGTCC------C-CCA---TCAACCAGTTGAGGCTCCCCTCATAGATTTATAAGTCTATGGCCAGTGGCATCCAGCTACCTGCCCTCCCTGCCTTCCCCAGGCTCCCTTCAGAGGGCCCTGGTCTTGCTGAC--CACCCAGAGGGGCCTCTGGCACTCACTCCAGCCATCCATCCCTTATAGCTTCACTA-TTTTGGTTCAAGCAGTGTTCC----TTAT----CAGGCCAGGTGGCTGTTGGGTGGGGCTCCCCAA-GCAAGAGGTGGCCCTGGGCCAGTGGGTTGGAAGACAGGGTGACCAGAGAAGAGGGAAGCCCAAGGGGGCTGAGCATTGGTTTGAACTATGGGTGTACTTCCTGGGTCCCGTGAGAGAGGCCAGCGTGTATGGGCTGGGGAGGGCTGCCACATCCCCCAGGCACCACCTGTGAAGCTCTGGCT----CCTCTGTCTTCCTCCCCTTTCCCTTCCAGCCCCTCTTTTCTAGGAACCTTGCCACACCCAC-ACCTGTGCCCTCCCCTCCCCAGCCCTCACACAGCTGCTGTGGCTCGCCCATGCTCTGCACTTGCCTCACCA
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1333483 917 +  24206276 GCACTCCAGTGGCGATCTAG---------GTGAGAGTCCCATGCACACGGTCATCCCACAACACACTCCACA-------GGCCAGGTAAGGACACACAG---CCCCCTTCCCTCTCTCCCAGGTACCATCATAGCTGCTAGCGTGTGACCAAAGGCAGGGTCCCTGGCC--------CCCACTGAAGCATTACCACTGGCCAGTGGGCTCACACACCTTGGTCTGTTGCTCCTAGAGGCCGCCTGTGCTATTCAGCCAAGGGGACCACAGTGCCTGCTGGCCCAGCTGAGCTCCACCTAGTGAACTCACTTGCCTTTCCTGCCATGGACTCTCCCTCTTCCGCTTTTCCCAGCAGGAAGGGCCCAGCCTCACCTATGCAACCTGCAGCCC------CTCCA---CCAACCAGTTGAGGCTCCCCTCTTAGACTTATAAGTCTATGGCCAGTGGCATCTGGCTGCCTGCCCTCCCTGCCTTCCCCAGTGTCCCCTCAGAGGACCCTGGGCTTTCAGAC--CACACAGAGGGGCCTCTGGCACTCACTCCAGTCATCCATCCCTTATAGCTTCACCA-TTTTGGTCCAAGCAGCACTCC----TTCTCTAACAAGCCTGGTGGCTGTTGGGTGGGGCTCCCCAA-GCAAAAGGTGGCCAAGAGCC-GTGGGCTGGAAGACAGGGTGACCAGAGAAGGGAGAAACCCAAGAGGGCTGAGCATTGGTCTGAACTATGGGTGCACTGCCTGGGTGCCTTGGGAGAGGCCAGCGTTTGTTGGGTGGAGACGGCTGACACAGCCCCCAGGCACCGCCTAAGAAGCTTCAGCTTCTCCCTCTATCTTCCTCCCCTTTCCCTTCCAGTCCCTGTGTTCCAGGAACCTTGCCACACCCGCAACCTGCGCCCTTCCCTCTCCAGCCCTCCCACAGCTGCTGCAGCATACCACTGCTTTGCACTTGCCTCACCA
i chlSab2.chr29                  C 0 C 0
s colAng1.NW_012114844v1          4045965 900 +   5013933 GCAATCCAGTGGCGATCTAG---------GTGAGAGTCCCACACACACGGTCATCCCACAACACACTCCACA-------GGCCAGGCAGGGACACACAG---CCCCCTTCCCTCCCTCCCAGGTGCCATCATAGCTGCCAGTGTGTGACCAAAGGCAGGGTCCCTGGCC--------CCCAGTGAAGCACTACCACTGGCCAGCGGGCTCACACACCTTGGCCTGTTGTTCCTAGAGGTCACCTGTGCTATTCAGCCAATGGGACCACAGTG---------CCAGCTGAGCTCCGCCTAGCGAGCCCACCTGCCTTTCCTGCCATGGACTCTCCCTCTTCTGCTTTTCCCAGTAGGAAGGGTGCAGCCTCACCTATGCAACCTGCAGCCC------C-CTA---TCAACCAGTTGAGGCTCCCCTCATAGATTTATAAGTCCATGGCCAGTGGCATCCGGCTACCTGCCCTCCCTGCCTTCCCCAGGCTCACTTCAGAGGGCCCTGGTCTTGCTGAC--CACCCAGAGGGGCCTCTGGTGCTCACTCCAGCCATCCATCCCTTATAGCTTCACCA-TTTTGGTTCAAGCAGTGTTTC----TTAT----CAGGCCAGTTGGCTGTTGGGTGGGGCTCCCCAA-GCAAGAGGTGGCCCTGGGCCAGTGGGTTGGAAGACAGGGTGACCAGAGAAGAGGGAAGCCCGAGGGGGCTGAGCATTGAACT--ATGATAGGTGCACTGCCTGGATCCCGTGAGAGAGGTCAGCATGTGTGGGCTGGGGAGGGCCGCCACAGCCCCCAGGCACCACCTGTGAAGCTCTGGCTCCTCCCTCCATCTTCCTCCCCTTTCCCTTCCAGCCCCTCTTTTCTAGGAACCTTGCCACAcccac-acctgcg-cctcccctccccagccctcccACAGCTGCTGTGGCTCGCCCATGCTCTGCACTTGCCTCACCA
i colAng1.NW_012114844v1         C 0 C 0
s cebCap1.NW_016107979v1             8011 923 -   1024465 GCAATCCAGTGGCGATCTGGGGTAAAAGCGCGAGAGTCCCATACACACGGTCATCCCACCACACGCCTCACA-------GGCCAGG-AAGGACACCCAG---TCCCCTCCCCTCCCTCCCAGGTACC-TCATAGATGCCGTCATGTGACTGAAGGCAGGGTCCCTGGCCACCTCTGACCCTCTGAAGCACTACCGCCAGCCAGCAGGCTCAGGCACCTTGGCCTGTTGCTATTA-----CCCC----CTATTCAGCCAA-AGGACCACAGCGGCTGCTGGCCCGGCTGAGCTCTGCCCAGACAGCTCGCCTGCCTCCCGCACCACGGACTCTCCCTCTTCTGTTATTCCCCTCAGGAA-GGCCCAGCCTCACCTTTGCGACCTGCAGCCCACCCCAC-TCA---CCGACCAGCTGAGGCTCCCCACTTACAATTATAAGTCTAAGGCCACTGGCATCTGGCTGCCTGCCCTCCCTGTCTCCCCCAGGCTCCCTTCAGAGGGTCCTGGGCTTTCTGAC--CACGCAGAGGGGCCTCAGGCGCTCCCTCCAGCCAT-CAGCCCTTTTAGCTTCACCC-TTCTGGTTCAGGCAGTGTTCC----TTCTCTATCAGGCCTGGTGGCTGTTGTGTGGGGCTCCCCAAGGCTGGCTGTGGCCCTGGGCCAGTGGATTGGAAGACAGGGTGTTCAGAGACGAGGGCAGCCCGAGGGCAGTGAGCATGGGTCTGAACTGTGGGTGCACTGCCTGGGTGCCGTGGGAGAGGCCAGTGTGTTTTGGGTGGGGAGGGCCGCCACAGCCCCCGGGCACTAATTGTGAAGCTCCGGctccttcctccttcttcctcccctttcccttccAGCCCC--TTTTCCAGGAATCTTGCCACAcctgc-acctgcgccctcccctgcccagccctcccccagctgctgcagctc-cccctgcTCTGTGCTTGCCTCACCA
i cebCap1.NW_016107979v1         C 0 C 0
e manLeu1.NW_012102632v1          3932723 4574 +   4030761 I

a score=1499608.000000
s hg38.chr15_KI270850v1_alt         47803 344 +    430880 GCT-----CTGGCTTTTCTCTAACCCGTTTTCTCTCTGCTTTCTCTCCAACTGCCAGCTGATTG----GGTCAGGCAAGTCCATCCCATCCGGGGAGCCCCAGGCCCCACTTCGACCTCTAAACAG-ATTCCTCCTCTTCTCAGAGACCTCCCTTTCCAAGCCTGCCTGGGTGGGTGTCCTGTGACTTGACAGTGGCTCCCCCA-GCCCCAAAGCCAGCCCCCTTCTTCTGTGACTT-AGTCTGTTGTAGTGGTGAGCTGACACATCCAGGTGTGACCGTTGCTGAAAACTTGTG-CCCCCTCTGTGGTATGCCCCTGCCCTGTTCtataaatagctataaattatc--atatatatac
s panTro5.chr15                  23373548 342 -  83230942 GCT-----CTGGCTTTTCTTTAACCCATTTCCTCTCTGC-TTCTCTCCAACTGCCAGCTGAACA----GGTCAGACAAGTCTATCCCATCCTGAGAGCCCCAGGCCCCGCTTCGACCTCTAAACAG-A-GCCTCCTCTTCTCAGCGCCCTCTCTTTCCAAGCCTGCCTGAGCCGGTGTCCTGTGACTTGACAGTGGCT-CCCCA-G-CCCAAACCCAGCCCCCTTCATCTGTGACTT-AGTCTGTTGTAGTGGTGAGCTGACACATCCAGGTGTGACCGTTGCTGAAAACTTGTG-GCCCCTCTGTGGTATGCCCCTGCCCTGTTCtataaatagctataaatacccatatatatatat
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                  23081463 342 -  99763055 GCT-----CTGGCTTTTCTTTAACCCATTTCCTCTCTGC-TTCTCTCCAACTGCCAGCTGAACG----GGTCAGACAAGTCTATCCCATCCTGAGAGCCCCAGGCCCCGCTTCGACCTCTAAACAG-A-GCCTCCTCTTCTCAGAGCCCTCTCTTTCCAAGCCTGCCTGAGCCGGTGTCCTGTGACTTGACAGTGGCT-CCCCA-G-CCCAAACCCAGCCCCCTTCATCTGTGACTT-AGTCTGTTGTAGTGGTGAGCTGACACATCCAGGTGTGACCGTTGCTGAAAACTTGTG-GCCCCTCTGTGGTATGCCCCTGCCCTGTTCtataaatagctataaatacccatatatatatat
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           339095 347 -    378907 GCT-----CTGGCTTTTCTCTAACCCGTTTTCTCTCTGCTTTCTCTCCAACTGCCAGCTGATCG----GGTCAGGCAAGTCCATCCCATCCTGAGAGCCCCAGGCCCCCCTTCGACCTCTAAACAC-ATCCCTCCTCTTCTCAGAGACCTCCCTTTCCAAGCCTGCCTGGGCGGGTGTCCTGTGACTTGACAGTGGCTCCCCCA-GCCCCAAAGCCAGCCCCCTTCATCTGTGACTTAAGTCTGTTGTAGCGGTGAGCTGACACGTCCAGGTTTGACCATTGCTGAAAACTTGTG-CCCCCTCTGTGGTATGCCTCTGCCCTGTTCtataaatagctataaattctcatatatatacac
i gorGor5.CYUI01015946v1         C 0 I 8
s nomLeu3.chr6_GL398151_2_random    26599 343 -     28805 GCT-----CTGGCTTTTCTTTAACCCCTTTTCTCTCTGC-TTCTCTCCAACTGCCAGCTGAATG----GGTCAGACAAGTCCATCCTGTCCTGAGAGCCCCAGGCCCCGCTTCGAAATCCAAACAATATACTTCCTCTCCTCAGAGACCTCCCTTTCCAAGCCTGCCTGGGCGGGCGTCCTGTGACTTGACTGTGGCT-CCCCA-G-CCCAAAGCCAGCCCCCTTCATCTGTGACTT-AATCTGTCGTA-TGGTGAGCTGACACATCCAGGTGTGACCGTTGCTGAAAACTTGTG-CCCCCTCTGTGGTATGTCCCTGCCTTGTTCTATAAATAGCTATAAATACTCatatatatatat
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60011852 329 + 169600520 GCT-----CTGGCTTTTCTTTAACCCATTTTCTCTCTGCTTTCTCTCCAACTACCAGCTGAACG----GGTCAGGCAAGTCCATCCTGTCTGGAGAGCCCAAGGTCCCCCTTCAATCTCCGAACAG-A-TCCTCCTCTTCTCGGAGGCCTCCCTTTCCAAGCCTGCCTGGGCAGGTGTCCTGTGACTTGACAGTGGCC-CCCCGGC-CCCAAAGTCAGCCCCTTTCATCCTTGACTT-AGTCTATTGTAGTGCTGAGCTGACACATCCAGGTATGACTGTTGCTGAAAACTTGTGCCCCCCCCTGTGGTATGTCCCTGCCCTGTTCTATAAATAGC--------------TATATAT--
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61606700 334 + 171882078 GCT-----CTGGCTTTTCTTTAATCCGTTTTCTCTCTGCTTTCTTTCCAACTGCCCGCTGAACG----GGTCAGGCAAGTCCATCCCGTCCTAAAAGCCCCAGGCCCCACTTTGACCTCTAAACAG-A-TCCT-CTCTTCTCGGAGGCCTCCCTTTCCAAGCCTGCCTGTGCGGGTGTCCTGTGACTTGACAGTGGAT-CCCCACT-CCCAAAG-------CCTTCATCTGTGACTT-AGTCTGTTGTAGTGGTGAGCTGACACTTCCAGCTGTGACTGTTGCTGAAAACTTGTG-CCCCCTCTGTGGTATGCCCCTGCCCTGTTCTGTAAATAGCTATAAATAGTAATATacatat--
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3935022 338 +   4820037 gct-----cTGGCTTTTCTTTAACCCATTTTCTCTCTGCTTTC-CTCCAACTGCCAGCTGAATG----GATCAGGCAAGTCCATCCCATCCTGAGAGCCCCAGGTCCCCCTTCAACCTCTAAACAG-A-TCCTCCTCTTCTGGGAGGCCTCCCTTTCCAAGCCTGCCTGGGCGGGTGTCCTGTGACTTGACAGTGGCT-CCCCA-G-CCCAAAGCCAGCCCCCTTCATCTGTGACTT-AGTCTGTTGTAGTGCTGAGCTGACACATCCAGGTGTGACCATTGCTGAAAACTTGTG--CCCCTCTGTGGTACG-CCCTGCCCTGTTCTATAAATAGCTCTAAATACTCATATATATAT--
i macNem1.NW_012011533v1         I 108 C 0
s cerAty1.NW_011999477v1          9796792 336 +  10730278 GCT-----CTGGCTTTTCTTTAACCCGTTTTCTCTCTGCTTTC-CTCCAACTGCCAGCTGAATG----GATCAGGCAAGTCCATCCCATCCTGAGAGCCCCAGGTCCCCCTTCAACCTCTAAACAG-A-TCCTCCTCTTCTGGGAGGACTCCCTTTCCAAGCCTGCCTGGGCGGGTGTCCTGTGACTTGACAGTGGCT-CCCCA-G-CCCAAAGCCAGCCCCCTTCATCTGTGACTT-AGTCTGTTGTAGTGCTGAGCTGACACATCCAGGTGTGACCATTGCTGAAAACTTGTG--CCCCTCTGTGGCATG-CCCTGCCCTGTTCTATAAATAGCTCTAAATACTCA--TATATAT--
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1334400 300 +  24206276 GCT-----CTGGCTTTTCTTTAATCCATTTTCTCTCTGCTTTCTTTCCAACCGCCCGCTGAACG--------------------------------------GGCCCCACTTTGACCTCTAAACAG-A-TCCT-CTCTTCTCAGAGGCCTCCCTTTCCAAGCCTGCCTGTGCGGGTGTCCTGTGACTTGACAGTGGAT-CCCCAGT-CCCAAAG-------CCTTCATCTGTGACTT-AGTCTGTTGTAGTGCTGAGCTGACATTTCCAGGTGTGACCGTTGCTGAAAACTTGTG-CCCCCTCTGTGGTATGCCCCTGCCCTGTTCTATAAATAGCtataaatagtaatatacatat--
i chlSab2.chr29                  C 0 C 0
s colAng1.NW_012114844v1          4046865 343 +   5013933 TCT-----CTGGCTTTTCTTTAACCTGTTTTCTCTCTGCTTCC-CTCCAACTCCCAGCTGAATGAATGGGTCAGGCAAGTCCATCCCATCCTGAGAGCCCCAGGTCCCCCTTCAACCTCTAAACAG-A-TCCTCCTCTTCTGGTAGGCCTCCCTTTCCAAGCCTGCCTGGGCGGGTGTCCTGTGACTTGACAGTGGCT-CCCCA-G-CCCAAAGCCAGCCCCCTTCATCTGTGACTT-AGTCTGTTGTAGTGCTGAGCTGACACATCCAGGTGTGACCGTTGTTGAAAACTTGTG-CTCCCTCTGTGGTATG-CCCTGCCCTGTTCTATAAATATCTATAAATACTCTGTGGTATGC--
i colAng1.NW_012114844v1         C 0 I 13
s cebCap1.NW_016107979v1             8934 307 -   1024465 GctctctccttgcttttctctctcccattttctctctgctttctctGCAACTGCCAGCCGATTG----GGTCAGGGAAGTCCATCCCATCCTGAGAGCCCTGGGCCCCGCTTCGACCTCTACACAG-ATCCCCCCTCCTGTCGGAGACCTCCCTTTCCAAGCCTGCCTGGGTGGCCATTCTGTGACTC-----------CCCTA-GCCCCAAAGGCAGCCCCCTTCATCTGTGACTT-AGTCTGTAGTAGTGGTGAGCTGACACATCCAGGTGTGACTG---------------A-GTCCCTCTGTGGC-TGCCCCTGAC-TGTTCTAGAAATAGCTATAAAT----------------
i cebCap1.NW_016107979v1         C 0 C 0
e manLeu1.NW_012102632v1          3932723 4574 +   4030761 I

a score=4528.000000
s hg38.chr15_KI270850v1_alt         48147 6 +    430880 acatac
s panTro5.chr15                  23373890 6 -  83230942 acatat
i panTro5.chr15                  C 0 C 0
s panPan2.chr15                  23081805 6 -  99763055 atacat
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           339450 6 -    378907 acacac
i gorGor5.CYUI01015946v1         I 8 C 0
s nomLeu3.chr6_GL398151_2_random    26942 6 -     28805 atatat
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60012181 2 + 169600520 ----AC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61607034 2 + 171882078 ----at
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3935360 2 +   4820037 ----AT
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9797128 2 +  10730278 ----AT
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1334700 2 +  24206276 ----ac
i chlSab2.chr29                  C 0 I 4
e cebCap1.NW_016107979v1             9241 0 -   1024465 C
e colAng1.NW_012114844v1          4047208 13 +   5013933 I
e manLeu1.NW_012102632v1          3932723 4574 +   4030761 I

a score=522842.000000
s hg38.chr15_KI270850v1_alt         48153 155 +    430880 acaaactcacacacacacacacatatatatatatacacatatacaTGTGGTCGACTGCCTCGCCTCTAGCACTGGGAATCAGTCCCCGTGCTGTGCTT---GTGGAGTCTTGTAGCCCAGCAAGAGGAAGCTGTCTCCTGACATCGCCCCTCCAAAGT
s panTro5.chr15                  23373896 153 -  83230942 atatacacacacacacaaacacacacatatatatataCCTAAACA--TGGCCGACTGCCTTGCCTTTAGCGCTGGCAATCAGTCACCATGCTGTCCTT---GTGGAGTCTTGTGGCCCAACAAGAGGAAGGTCTCCCCTGACATTGCCCCTCCAAAGC
i panTro5.chr15                  C 0 N 0
s panPan2.chr15                  23081811 153 -  99763055 atatacacacacacacaaacacacacatatatatatacctaaaca--tGGCCGACTGCCTTGCCTTTAGCGCTGGCAATCAGTCACCATGCTGTCCTT---GTGGAGTCTTGTGGCCCAACAAGAGGAAGGTCTCCCCTGACATTGCCCCTCCAAAGC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           339456 155 -    378907 acacacacacacacacacacacacatatatatatacatatatacatGTGGTCGACTGCCTCACCTCTAGAACTGGGAATCAGTCCCTGTGCTGTGCCT---GTGGAGTCTTGTAGCCCAGTAAGAGGAAGCTGTCTCCTGACATCGCCCCTCCAAAGT
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    26948 128 -     28805 atat--------------------atatatatatGCACCTAAACA--TGGCTGACCACCTCACCTCTAGCACTGGGAATCAGTCACCATGCTGTCCTT--------GTCTTGTGGCCCAACAAGAGGAAGCTCTCCCCTGACACTGCCCCTCCAAAGT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60012183 121 + 169600520 ----------------------------------ACACACACACATGTGGTTGACCGCCTCACCTCCAGAGCTGGGAATCAGTCTCCGTGCTGTCATT---TTGGAGGCTTGTGGCTCATCAAGAGAAAGCTGTCCCCCAATATCACCCCTCCAAAGT
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61607036 125 + 171882078 ------------------------------acacacacacacacacGTGGCCGATCACCTTGCTTCTAGCACTAGGAATCAGTCCCCGTGCTGTCCTT---TTGAAGTCTTGTGGCCAAAGAAGAGAAAGCTATCCCCCGACATCGCCCCTCCAAAGT
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3935362 121 +   4820037 ----------------------------------ACACATCTACACGTGGCCGACCACCTCACCTCTAGCACTGGGAATCAGTCACCGTGCTGTCCTG---GTGGAGTCTTGTGGCCCAACAAGAGAAAGCTGTCCCTTGACATTGCCCTTCCAAAGA
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9797130 121 +  10730278 ----------------------------------ACACATCTACACGTGGCCGACTGCCTCACCTCTAGCACTGGGAATCAGTCACCGTGCTGTCCTT---GTGGAGTCTTGTGGCCCAACAAGAGAAAGCTGTCCCTTGACATTGCCCTTCCAAAGT
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1334706 125 +  24206276 ------------------------------acacacacacacacacGTGGCCGATCACCTTGCTTCTAGCACTAGGAATCAGTCCCCGTGCTGTCCTT---TTGAAGTCTTGTGGCCAAAGAAGAGAAAGCTATCCCCTGACATCGCCCCTCCAAAGT
i chlSab2.chr29                  I 4 C 0
s colAng1.NW_012114844v1          4047221 155 +   5013933 ataaatagctctaaatactcatatatatatatatatacatctacacatGGCCGACCGCCTCACCTCTAGCACTGGGAATCAGTCACTGTGCTGTCCTT---GTGGAGTCTTATGGCCCAACAAGAGAAAGCTGCCCTTTGATATTGCTCTTCCAAAGA
i colAng1.NW_012114844v1         I 13 C 0
s cebCap1.NW_016107979v1             9241 136 -   1024465 ----------------------ACTCACATATATATACACCTACACGTGACTGACCGCCTCGCCTTTGGCACTGGGAATCAGTCACCATGCTGTCCTTGTGGTGGAGTCGTGTGGCCCAACAAGAGAAAGCTGTCCCCTGACACTGCCCTTCCAAAGT
i cebCap1.NW_016107979v1         C 0 C 0
e manLeu1.NW_012102632v1          3932723 4574 +   4030761 I

a score=288974.000000
s hg38.chr15_KI270850v1_alt         48308 70 +    430880 GCACCACCTCCAGTGAGCTTCCGGGACATGCGCGGCCTATGGACAGCCAGCCCCCGCCATCCCTCCCGCC
s panPan2.chr15                  23081964 70 -  99763055 ATGCCACCTCCAGTGAGACTCCCTGTCATGCCTGGCCTGTGGACAGCCAGCCCCTGTCATCCCTCCCACC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           339611 70 -    378907 GCACCACCTCCAGTGAGCTTCCGGGACATGCGCGGCCTGTGGACAGCCAGCCCCCGCCATCCCTCCCGCC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    27076 70 -     28805 GCGCCACCTCCAGTGAGCCTCCCTGTCATGCCCGGCCTGTGGACAGCCAGCCCCCGCCATCCCTCCCACC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60012304 70 + 169600520 GCACCACCTCCAGTGAGCCTCCCTGTCATGCCCGGCCTGTGGACAGCCAGCCCCCACCATCCCTCCCACC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61607161 70 + 171882078 GCGCCACCTCCAGTGAGCCTCCCTGTCATGCCCAGCCTGTGGACAGCCAACCCCCGCCATCCCTCCCACC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3935483 70 +   4820037 GCGCCACCTCCAGTGAGCCTCCCTGTCATGCCTGGCCTGTGGACAGCCAGCCTCCACCATCCCTCCCACC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9797251 70 +  10730278 GCGCCACCTCCAGTGGGCCTCCCTTTCATGCGCGGCCTGTGGACAGCCAGCCTCCACCATCCCTCCCATC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1334831 70 +  24206276 GCGCCACCTCCAGTGAGCTTCCCTGTCATGCCCAGCCTGTGGACAGCCAGCCCCCGCCATCCCTCCCACC
i chlSab2.chr29                  C 0 C 0
s colAng1.NW_012114844v1          4047376 70 +   5013933 GCGCCACCTCCAGTGAGCCTCCCTGTCATACCCGGCCTGTGGACAGCCAGCCTCCGCCATCCCTCCCACC
i colAng1.NW_012114844v1         C 0 C 0
s cebCap1.NW_016107979v1             9377 53 -   1024465 GCGACACCTCCAGTGAGCCTCCCTGTCAC-----------------CCAGGACCCGCCATCCCTCCTGCC
i cebCap1.NW_016107979v1         C 0 I 4
e manLeu1.NW_012102632v1          3932723 4574 +   4030761 I

a score=4408.000000
s hg38.chr15_KI270850v1_alt         48378 7 +    430880 CTTCTGG
s panPan2.chr15                  23082034 5 -  99763055 CCCC--A
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           339681 7 -    378907 CTTCTGG
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    27146 5 -     28805 ACCC--A
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60012374 5 + 169600520 CTCC--A
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61607231 5 + 171882078 CTCC--A
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3935553 5 +   4820037 CCCC--A
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9797321 5 +  10730278 CCCC--A
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1334901 5 +  24206276 CTCT--A
i chlSab2.chr29                  C 0 C 0
s colAng1.NW_012114844v1          4047446 5 +   5013933 CCCC--A
i colAng1.NW_012114844v1         C 0 C 0
e cebCap1.NW_016107979v1             9430 4 -   1024465 I
e manLeu1.NW_012102632v1          3932723 4574 +   4030761 I

a score=967325.000000
s hg38.chr15_KI270850v1_alt         48385 227 +    430880 CCAAGCATGGCGGTGCTGTGCAGGCAGCTGTGTGGCCTGACAGTCTCTACCAGTCCTGCTGTCCCTCGGCTGAGAA----ACCCATTTCTGAATGACAGAGAATGTGTCCTCTGCTGGCTG-TGTTCTCTATAGAGCTCAGGGGAGGGAAGAGGCCAAGCCA-TTTTTAGGGTGCTGTTGGCAGCAGTGAAAAGGTCACACCCTTTTCAAGGGACACTTTTCCTGGAAAGTCC
s panPan2.chr15                  23082039 230 -  99763055 CCAAGCATGGGGGTGCTGTGCAGGCAGCCGTGTGGCCT-ACAGTCTCTACCAGTCCTGCTGTCCCTCGGCTGAGAATCAAACCCATTTCTGGATGACAGGGAATGTGTCCTCTGCTGGCTG-TGTTCTCTGTGGAGCTCAGGGGAGGGAAAAGGCCAAGCCA-TTTCTAGGGTGCTGTGGGGAGTGGTGAAAAGGCCACAACCTTTCCAAGGGACACTTTTCCTGGAAAGCCC
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           339688 227 -    378907 CCAAGCATGGCGGCACTGTGCAGGCAGCCGTGTGGCCTGACAGTCTCTACCAGTCCTGCTGT-CCTCGGCTGAGAA----ACCCATTTCTGAATGACAGAGAATGTGTCCTCTGCTGGCTG-TGTTCTCTATGGAGCTCAGGGGAGGGAAAAGGCCAAGCCATTTTTTAGGGTGCTGTTGGCAGCAGTGAAAAGGTCACACCCTTTTCAAGGGACACTTTTCCTGGAAAGTCC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    27151 231 -     28805 CCAAGCATGGGGGTGCTGCACAGGCAGCTGTGTGGCCTGACAGTCTCTACCAGTCCTGGTGTCCCTCGGCTGAGAATCAAACCCATTTCTGGATGATGGGGAATGTGTCCTCTGCTGGCTG-TGTTCTGTGTGGATCTCAGGGAAGAGAAAAGGCCAAGCCA-TTTCTAGGGTGCTGTTGGGAGTGGTGAAAAGGCCACACCCTTTCCAAGGGACACTTTTCCTGGAAAGCCC
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60012379 229 + 169600520 CCAAGCATGAGGGTGCTGTGCAGGCAGCCGTGTGGCCTGACAGTCTCTACTAGTCCTGTTGTCCCTCGGCTGAGAATCAAACCCATTTCTGGATGACGGGGAATGTGTCCTCTGCTGGCTG-TGTTCTCTGTGGAGCTCAGGGGAGGGAAAAGGTCAAGCCA-TTTCTAGGGTGCTGTTGGGAGCACTGAAAAGGCCAAACCCTTTCCAAGGGACAC--TTCCTGGAAAGCCC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61607236 230 + 171882078 CCAAGCATGGGGGTGCTGTGCAGGCAGCCGTGTGGCCTGACAGTCTCTACCAGTCCTGCTGTCCGTCAGCTGAGAATCAAACCTGTTTCTGGATGACAGGGAATGTGGCCTGTGCTGGCTGTTGTTCTCTGTGCAGCTCAGGGGAGGGAAAAGGCCAAGCCA-TTTCTAGAATGCTGTTGGGAGCAGTGAAAAGGCCACAGCCTTTCCAAGGGACAC--TTCCTGGAAAGCCC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3935558 226 +   4820037 CCAAGCATGGGGGTGCTGTGCAGGCAGCTGTGTGGGCTGACAGTGTCTACCAGTCCTGCTGTCCCTCAGCTGAGAATCAGATCCATTTCTGGATGACGGGGAATGTGTCCTCTGCTGGC---TGTTCTCTGTGGAGCTCA-GGGAGGGAAAAGGCCAAGCCA-TTTCTAGGGTGCTGTTGGGAGTGGTGAAAAGGCCACACCCTTTCTGAGGGACAC--TTCCTGGAAAGCCC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9797326 228 +  10730278 CCAAGCATGGGGGTGCTGTGCAGGCAGCTGTGTGGGCTGACAGTGTCTACCAGTTCTGCTGTCCCTCAGCTGAGAATCAGATCCATTTCTGGATGACAGGTAATGTGTCCTCTGCTGGCTG-TGTTCTCTGTGGAGCTCA-GGGAGGGAAAAGGCCCAGCCG-TGTCGAGGGTGCTGTTGGGAGTGGTGAAATGGCCACACCCTTTCCAAGGGACAC--CTCCTGGAAAGCCC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1334906 229 +  24206276 CCAAGCATGGGGGTGCTGTGCAGGCAGCCGTGTGGCCTGACAGTCTCTACCAGTCCTGCTGTCCATCAGCTGAGAATCAAACCTGTTTCTGGATGACAGGGAATGTGGCCTGTGCTGGTTG-TGTTCTCTGTGCAGCTCAGGGGAGGGAAAAGGCCAAGCCA-TTTCTAGGATGCTGTTGGGAGCAGTGAAAAGGCCACAGCCTTTCCAAGGGACAC--TTCCTGGAAAGCCC
i chlSab2.chr29                  C 0 C 0
s colAng1.NW_012114844v1          4047451 229 +   5013933 CCAAGCATGGGGGTGCAGTGCAGGCAGCTGTGTGGGCTGACAGTCTCTACCAGTCCTGTTGTCCCTCAGCTGAGAATGAAATCCATTTCTGGATGACAGGGAATGTGTCCTCTGCTGGCTG-TGTTCTCTGTGGAGCTCGGGGGAGGGAAAAGGCCAAGCCA-TTTCTAGGGTGCTGTTGGGAGTGGTGAAAAGGCCACACCCTTTCCAAGTGACAC--TTCCTGGAAAGCCC
i colAng1.NW_012114844v1         C 0 C 0
s cebCap1.NW_016107979v1             9434 229 -   1024465 CCAAGGATGGAGGTGCTGTGCAGGTAGCCCTGTGTTCTGATAG--TCTACCAGTCCTGCTGTCCCTTGGCTGAGAGTCAAACCCATTTCTGGATGACGGGAAATGTGCCCTCTGTGGACTG-TGTTCTCTGTGGAGCTCAGGGGAGGGGAAAGACCAAGCCA-TTTCTGGGGTGCTGTTGGGAGCAGTGAAAACGCCCCACCCTTTCCAAGGGACACTGTTCCCGGAAAGCCC
i cebCap1.NW_016107979v1         I 4 C 0
e manLeu1.NW_012102632v1          3932723 4574 +   4030761 I

a score=2394904.000000
s hg38.chr15_KI270850v1_alt         48612 486 +    430880 CTGGAGCTTAGCTGGCTCTTATTCTGTGAAGCCGGCTCTGGCCAGTAGGGCAC---AGGGCCCTGAACTCAGCCTGGAAGGAGCCTGTGGGGCAGCCGGCACT------------------CTGGAGGGACAGACAG-----GCCACCCGGTGCAGACAGGAGAGGGAGGCAGGGGGACGGAATGGAAGACACGTGGGGTGGATGGAAGTCAGTGCCCTTGGGCACTGGTATCTGTCTTCCTGACCACAGCTAGATCAGGCTTCTCAACCTGTTGGCTCTCAGGGCCGGACTATACTCCAGAGGCGCCATGGCAGTCCTCGTGAAATCCACCAGGTATCACCAGGCAGCATACAGGTAACAGGCCTGGAAGATTCCCCACAGCCCAGCTGGACATGCTGAGACACTCTGGGGCTCCTCATTGAGTGGGAAAAACTGCAGGACCCAGTGAGGGAAACAGGAACATGCCAGGCCGAGCAGTATGGCTAAATCCATTTATTCcaaaatcaa---aagc
s panPan2.chr15                  23082269 505 -  99763055 CTGGAGCTTAGCTGGCTCTTATCCTGTGAAGCTGGCTCTGGCCACTAGGGAGC---AGGGCCATGAACTCAGCCTGGAGGAAGCCTGTGGGGCAGCCAGCACTAACAGGCCACCAGGTGCACTGGAGGGACAGACAGAACAGGCCACCAGGTGCAGACGGGAGAGGGAGGCAAGGGGACGGAACGGAAGACACGTGGGGTGGATGGAAGTCAGTGCCTTTGGGTGCTGGTATCTGCCTTCTCGGCCACCACTAGATCAGGCCTCAGAGCCTGTTGGCTGTCAGGGCTGGACTGTGCCCCATAGGCGCCATAGCAGTCCCCGTGAAATCCACCAGGTGTCACCAGGCAGCATACAGGTAACAGGCCTGGAAGGTCCCCAACAGCCCAGCTGGACATACT----CACTCTGGGGCTCTTTGTTCAGCGGCACAAACTCCAGGACCCAGTGAGGGAAATGGGAACCCACCAGGCTGAGCAGTCTGGCTAAATCCATTTATTCCAAAATGAA---AAGC
i panPan2.chr15                  C 0 I 10
s gorGor5.CYUI01015946v1           339915 484 -    378907 CTGGAGCTTAGCTGGCTCTTATCCTGTGAAGCCGGCTCTGGCCACTAGGGCAC---AGGGCCCTGAACTCAGCCTGGAGGGAGCCTGTGGGGCAGCCGGCACT------------------CTGGA-GGACAGACAG-----GCCACCCGGTGCAGACAGGAGAGGGAGGCAGGGGGATGGAATGGAAGACACCTGGGGTGGATGGAAGTCAGTGCCCTTGGGCACTGGTATCTGTCTTCCTGACCACAGCTAGATCAGGCTTCTCAACCTGTTGGCTGTCAGGGCCGGACTATACTCCATAGGCGCCATGGCAGTCCTCGTGAAATCCACCAGGTGTCACCAGGCAGCATACAGGTAACAGGCCTGGAAGATTCCCCACAGCCCATCTGGACATGCTGAGACACTCTGGGGCTCCTCGTTG-GTGGGAAAAACTGCAGGACCCCGTGAGGGAAACGGGAACATGCCAGGCCGAGCAGTATGGCTAAATCCATTTATTCCAAAATCAA---AAGT
i gorGor5.CYUI01015946v1         C 0 I 1
s nomLeu3.chr6_GL398151_2_random    27382 477 -     28805 CTGGAGCTTAGCTAGCTCTTATCCTGTGAAGCCGACTCTGGCCACTAGGGGGC---AGGGCCATGAACTCA-TAGGGACAGACTCAACAGGCCACCAGGTGCT------------------CCGGAGGGACAGACAGAACAGGCCACCGAGTGCAGACAGGAGAGGGAGGCAAGGGGACAGAACGGAAGACGCCTGGGGTGGATGGAAGTCAGTGTCCTTGGGTGCTGGTATCTGCCTTCCCAGGCACCACTAGATCAGGCTTCTGAGCCTGTTGGCTGTCAGGGCTGGACTGTGCCCCATAGGCGCCATGGCAGTCCCTGTGAAATCCACCAGGTGTCACCAGGCAGCATACAGGTAACAGGCCTGGAAGGTCCCCAACAGCCCAGCTGGACAT-CT----CACTCTGGGGC-CTTCATTCAGTGGCACAAACTCCAGGACCCAGTGAGGGAAACGGGAACCCACCAGGCTGAGCAGTATGGCTAAATCCATTTACTCCAAAAT----------
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60012608 489 + 169600520 CTGGAGTTTAGCTGACTCTTATCCTGTGAAGCCAGCTCTGGCCATTAGCAAGC---AGGGACATGAACTCAGCCTGAAGGAAGCCTGAAGGGCACTTGTCACT------------------CTGGAGGGAGAGACACAACAGGCCACCCAGTGCAGACAGGAGAGGGAGGCAAGGGGACAGAACGGAAGATGCCTGGGGTGGATGGAAGTCAGTGGCCTTAGGTGCTGGTATCTGTCTTCCTGGCCACCACTATATCAGGCTTCTGAGCCTGTTGGCTGTCAGGGCTGGACTGTGCCCCATAGGCACCATGGCAGTCCTCGTGAAATCCACCAGGTGTCACCAGGCAGCATACACGTAACAGGCCTGGAAGGTCCCCAACAGCC-ATCTGGACATGCTCAGACATTCTGGGGCTCCTCGTTCAGTGGGACAAACTGCAGGACCCAGTGAGGGAAACGGAAATATACCAGGCCGAGCAGTATGGCTAAATCCGTTTATTCCAAAATAAaaac----
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61607466 486 + 171882078 CTGGAGCTTAGCTGACTCTTATCCTGTGAAGCTGACTCTGGCCATTAGCAGGC---ATGGCCATGAACTCAGCCTGGAGG-AGCCTGCGGGGTAGCCAGCACT------------------CTGCAGGGACAGACACAACAGGCTACCAGGTGCAGACAGGAGAGGGAGGCAAGGGGACAGAAAGGAAGATGCCTGGGGTGGATGGAAGTCAGTGGCCTTGGGTGCTGGAATCTGTCTTCCCGGCTACCACTAGATCAGGCTTCTGAGCCTGTTGGCTGTCAGGGCTGGACTGTGCCCCATAGGCACCATGGCAGTCCCCGTGAAATCCACCAGGTGTCACCAGGCAGCATACAGGTAACAGGCCTGGAAGGTCCCCAACAGCCCAGCTGGACATGCTCAGACACTCTGGGGCTCCTCGTTCAGTGGGACAAACTGCAGGACCCAGTGAGGGAAATGGGAACACACCAGGCCGAGCAGTATGGCCAAATCCATTTATTCCAAAATGAA-------
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3935784 486 +   4820037 CTGGAGCTTAGCTGGCTCTTATCCTTTGAAGCTGGCTGTGGCCACTAGGGGGC---AGGGCCATGAACTCAGCCTGGAGG-AGCCTGCGGGGTACCTGTCACT------------------CTGGAGGGACAGACAGAACAGGCCACCCAGTGCAGATAGGCCAGAGAGGCAGGGAGGCCGAAGGGAAGATGCCTGGGGTGGATGGAAGTCAGTGTCCTTGGGTGCTGGTATCTGCCTTCCTGGCCACCGCTAGATCAGGCTTCTGAGCCTGTTGGCTGTCAGGGCCTCACTGTGCCCCATAGGTGCCATGGCAGCCCCCATGAAATCCATCAGGTGTCACCAGGCAGCATACAGGTAACAGGCCTGGAAGGTTCCCAACAGCTGAGCTGGACATGCTCAGACACTCTGGGGCTCCTCGTTCAGTGGCACAAACTCCAGCACCCAGTGAGGGAAACGGGAACCCACCAGGCTGAGCAGTATGGCTAAATCCATTTATTCCATAATGAA-------
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9797554 486 +  10730278 CTGGAGCTTAGTTGGCTCTTATCCTGTGAAGCTGGCTGTGGCCACTAGGGGGC---AGGGCCATGAACTCAGCCTGGAGG-AGCCTGCGGGGCACCTGTCACT------------------CTGGAGGGACAGACAGAACAGGCCACCCAGTGCAGATAGGCGAGAGAGGCAGGGGGCCCGAAGGGAAGATGCCTGGGGTGGATGGAAGTCAGTGTCCTTGGGTGCTGGTATCTGCCTTCCCGGCCACCGCTAGATCAGGCTTCTGAGCCTGTTGGCTGTCAGGGCCTCACTGTGTCCCATAGGTGCCATGGCAGCCCCCATGAAATCCACCAGGTGTCACCAGACAGCATATAAGTAACAGACCTAGAAGGTCCCCAACAGCTGAGCTGGACATGCTCAGACACTCTGGGGCTCCTCGTTCAGTGGCACAAACTCCAGCACCCAGTGAGGGAAACGGGAACCCACCAGGCTGAGCAGTATGGCTAAATCCATTTATTCCATAATGAA-------
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1335135 486 +  24206276 CTGGAGCTTAGCTGACTCTTATCCTGTGAAGCTGACTCTGGCCATTAGCGGGC---ATGGCCATGAACTCAGCCTGGAGG-AGCCTGCGGGGTAGCCAGCACT------------------CTGCAGGGACAGACACAACAGGCTACCAGGTGCAGACAGGAGAGGGAGGCAAGGGGACAGAAAGGAAGATGCCTGGGGTGGATGGAAGTCAGTGGCCTTGGGTGCTGGAATCTGTCTTCCCGGCTACTGCTAGATCAGGCTTCTGAGCCTGTTGGCTGTCAGGGCCGGACTGTGCCCCATAGGCACCATGGCAGTCCCCGTGAAATCCACCAGGTGTCACCAGGCAGCATACAGGTAACAGGCCTGGAAGGTCCCCAACAGCCCAGCTGGACATGCTCAGACACTCTGGGGCTCCTCGTTCAGTGGGACAAACTGCAGGACCCAGTGAGGGAAACGGGAACACACCAGGCCGAGCAGTATGGCCAAATCCATTTATTCCAAAATGAA-------
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3937297 486 +   4030761 CTGGAGCTTAGCTGGCTCTTATCCTGTGAAGCTGGCTGTGGCCACTAGGGGGC---AGGGTCATGAACTCAGCCTGGAGG-AGCCTGCGGGGCACCTGTCACT------------------CTGGAGGGACAGACAGAACAGGCCACCCAGTGCAGATAGGCGAGAGAGGCAGGGGGGCCAAAGGGAAGATGCCTGGGGTGGATGGAAGTCAGTGTCCTTGGGTGCTGGTATCTGCCTTCCTGGCCACCGCTAGATCAGGCTTCTGAGCCTGTTGGCTGTCAGGGCCTCACTGTGCCCCATAGGTGCCATGGCAGCCCCCATGAAATCCACCAGGTGTCACCAGACAGCATATAAGTAACAGGCCTGGAAGGTCCCCAACAGCTGAGCTGGACATGCTCAGACACTCTGGGGCTCCTCGTTCAGTGGCACAAACTCCAGCACCCAGTGAGGGAAACGGGAACCCAGCAGGCTGAGCAGTATGGCTAAATCCATTTATTCCAAAATGAA-------
i manLeu1.NW_012102632v1         I 4574 C 0
s colAng1.NW_012114844v1          4047680 486 +   5013933 CTGGAGCTTAGCTGGCTCTTATTCTGTGAAGCTGGCTGTGGCCACTAGGGGGC---AGGGCCATTAACTCAGCCTGGAGG-AGCCTGCGGGGCACCTGTCACT------------------CTGGAGGGACAGACAGAACAGGCCACCCAGTGCAGATAGGCGAGAGGGGAAGGGGGGCTGAAGGGAAGATGCCTGGGGTGGATGGAAGTCAGTGTCCTTGGGTGCTGGTATCTGCCTTCCTGGCCACCGCTACATCAGGCTTCTGAGCCTGTTGGCTGTCAGGGCCTCACTGTGCCCCATAGGTGCCATGGCAGTCCCCGTGGAATCCACCAGGTGTCACCAGACAGCATATAAGTAACAGGCCTGGAAGGTCCCCAACAGCTGAGCTGGACATGCTCAGACACTCTGGGGCTCCTCGTTCAGTGGCACAAACTCCAGGACCCAGTGAGGGAAACAGGAACCCAGCAGGCTGAGCAGTATGGCTAAATTCATTTATTCCAAAATGAA-------
i colAng1.NW_012114844v1         C 0 C 0
s cebCap1.NW_016107979v1             9663 470 -   1024465 CTGGAGCTTAGCTGG-TCTTATCCTGTGAAGCCGGCTCTGGCCACTAGGGGGCAGGAGGGCCATGAACTCAGCCTGGAGGGAGCCTGT-GGGCAGCCAGCACT------------------CTGGAGGGACAGACAGAACAGGCCACCAGGTGCAGACAGGAGAGGGAGGCAGGGGGCTGGAA-GAAAGACGCCTGGGGTGGATGGAAGTCAGCGCCCTTGGGTGCTGGTACCTGCCTTCCCGACCACCGCTAGATCAGGCTTCTGAGCCTGCTGGCTGTCAGGGCCAGAC------------GTGCCATGGCAGTCCCCAGGAAATCC-CCAGGTGTCACCAGGCAGCACACAGGTAACAGGCCTGGAAGGTCCCCAACAGCCCAGCTGGACATGTTCAGACACTCTGGGGCTCCTCGTTCAGTGGCACAAACTCCAGGA-CCAGTGAGGGAAACGGGAATACTCCAGGCCGAGCAGTGTGACTAAATCCATTTATTCCAAAAT----------
i cebCap1.NW_016107979v1         C 0 C 0

a score=15561.000000
s hg38.chr15_KI270850v1_alt         49098 40 +    430880 gaaccaaaacaaaaac-aaaa-----------------aaacaaaacaaaacaaaaAA
s gorGor5.CYUI01015946v1           340400 41 -    378907 aaacaaaaacaaaaacaaaaa-----------------aaacaaaacaaaacaaaaaa
i gorGor5.CYUI01015946v1         I 1 C 0
s nomLeu3.chr6_GL398151_2_random    27859 17 -     28805 ------------------GAA-----------------AAACAAAAT-AAACA-----
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60013097 34 + 169600520 ------------------aaacaaacaaacaaacaaacaaacaaaca-aaACA-----
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61607952 14 + 171882078 --------------------------------------AAGCAAAAA-AAACA-----
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3936270 14 +   4820037 --------------------------------------AAGCAAAAT-AAACA-----
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9798040 14 +  10730278 --------------------------------------AAGCAAAAT-AAACA-----
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1335621 14 +  24206276 --------------------------------------AAGCAAAAA-AAACA-----
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3937783 14 +   4030761 --------------------------------------AAGCAAAAT-AAACA-----
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1          4048166 14 +   5013933 --------------------------------------AAGCAAAAT-AAACA-----
i colAng1.NW_012114844v1         C 0 C 0
s cebCap1.NW_016107979v1            10133 17 -   1024465 ------------------AAA-----------------AAGCAAAAT-AAACA-----
i cebCap1.NW_016107979v1         C 0 C 0
e panPan2.chr15                  23082774 10 -  99763055 I

a score=2127166.000000
s hg38.chr15_KI270850v1_alt         49138 436 +    430880 GGGGTCCCATCACCAGGG-AGCCATGACGCCATCCCCACCCCCATCATCGCTCCTATGCTAACAATGAATAAGTTTCCCAGCCGCGAATAATTATAAGAACCTCTTCCTCATATGCCAGCTGCAACCTCCGCTAGGTACAATA-----------------------------CAGAATGTTACACAGCTACAGTATGTACACGGGGGAAGGGGGGCCACCCCCAGCAGCCTGTGCCCTGGCCTGGTCTACAGTTAACTCCACTGTCCCGCCTCAGCTGCCTCTCTGAGTAAGAAGATGGGAG-CCCCCCTGAGGGAAAAGTTGCTTTGGTGAGAGTAAGAAGGCCGTCAGACCTCCTCCAAACAAACCAACTCCACCAACCTCTGGCTCTTAAATAACAAACATCATCATCCAGAAATGTAAGGACTCAGCCTTGGTCAAGGTGGTAAAGGGTCTGTTTGTCTCCCT
s panPan2.chr15                  23082784 461 -  99763055 GGAGTCGCATCACCAAGGCAGCCAGGACCCCATCCCCTCCTCCTTCCTCTGTCCTATGCTATCATTAAGTAAGTTTCCCAGCTGTAAATAATGATTACAACCTCCTCCTAATAAGCCAGCACCAGCCTCTGCTATGTACAATATAAGGGATGGCCTTACCCCCTGGAATATGCAAAATGTTACACAGATACTATATGTACACTGGGGAAGGGGGGCCACCAC-AGAAGCCCATGCCCTCGCCTGCTCTATGGTTAGCTCCACTGTCCCACCTCAGCTGCCTCTCTGAATAAGA---TGGGAG-CCCCC-TGAGGGAAAAGTTGCTTTGGTGAGAGTAGGGAGGCCATCAGGCCTCCTCCAAACAAACCAGCTCCACCAGCCTCTGGCTCTTAAATAATAATCATCATCATCCAGAAATTTAAGGACTCAGCCTTGGTCAAGGTGGCAAAGGGTCTGTTTTTCTCCCC
i panPan2.chr15                  I 10 C 0
s gorGor5.CYUI01015946v1           340441 432 -    378907 GGGGTCCCATCACCAGGG-AGCCATGACCCCATCCCCGCCCCCATCATCGCTCCTATGCTAACAATGAATAAGTTTCCCAGCCTTGAATAATTATAAGAACCTCTTCCTCATATGCCAGCTGCAACCTCCGCTAGGTACGATA-----------------------------CAGAATGTTACACAGCTACAGTATGTACACGGGGGAAGGGGGGCCACCCCCAGCAGCCTGTGCCCTCGCCTTGTCTACAGTTAACTCCACTGTCCCGCCTCAGCTGCCTCTCTGAGTAAGAAGATGGGAG-CCCCCCTGAGGGAAAAGTTGCTTTGGTGAGAGTAAGGAGGCCGTCAGACCTCCTCCAAACAAACCAACTCCACCAACCTCTGGCTCTTAAATAA----CATCATCATCCAGAAATGTAAGGACTCAGCCTTGGTCAAGGTGGTAAAGGGTCTCTTTGTCTCCCT
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    27876 460 -     28805 GGAGTTGCATCACCAAGGCAGCCAGGACCCCATCCCCGCCTCCTTCCTCTGTCCTGTGCTATCAATAGGTAAGTTTCCCAGCCATAAATAATGATTAGAACCTCCTCCTCATACGCCAGCTCCAGCCTCCACTACGTATAATACAAGGGGTGGCCCTACCCCCTGGAATATACAAAATGTTACACAAATACTATATGTACACTGGGGAACGGGGGCCACCCC-AGCAGCCCGAGCCCTCACCTGCTCTACAGTTAGCCCCACTGTCCTGCCTCGGCTGCCTCTCTGAATAAGA---TGGGAG-ACCCC-TGAGGGAAAAGTTGCTTTGGTGAGAGTAGGGAGGCCATCAGGCCTCTTCCAAACAAACCAACTCCACCAGCCTCTGGCTCTTCAATAACAAACATCATTATCCAGAAATGTAAGGACTCAGCCCTGGTC-AGGTGGCAAAGGGTCTGTTTGTCTCCCT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60013131 439 + 169600520 GGAGTCACATCACCAGGC-AGCCACGA-------CCTGCCTCCTTCCTCCCTCCTATGCTAGCAATAAATAAGTTTCCCAGCCACA---AATGCTTAGAACTTCCTCCTCATATGCTAGCTCCAACCTCCACTAGGTAAGGTACAGGGGGTGGCCCTACCCCCTGGAATATACAAAATGTTACACAGATACTGTATGTACACTGGGGAA-GGGGGTCACCCC-AGCAGCCTGTGCCCTTACCTGGT----------CCCCACTGTCCCACCTCAGCTGCCTCCCTGAATAAGAAGATGGGAG--CCCCCTGAGGGAAAAGTTGCTTTGGTGAGAGTAGAGAGGCCATCAGGCCTCCTCCAAACAAACCAGCTCCACCAGCCTCTGGCTCTTAAATAACAAACATCA---TCCAGAAATTTAATGACTCAGCCCTGGTCAAGGTGGCAAAGGATCTGTTTGTCTTCCT
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61607966 444 + 171882078 GGAGTCGCATCAC--------CCACAACCCCATCCCTGCCTCCTTCCTCTGTACTATGCTAGCAATAAATAAGTTTCCCAGCCACA---AATGCTTAGAACCTTCTCCTCATATGCCAGCTCCAACCTCC-------ATGATACAGGGGGTGGCCCTA-CCCCAGGAATATACAAAATGTTACACAGATACTGTATGTACACTGGGGAAGGGGGGCCACCCC-AGCAGCCTGTGCCCTTGCCTGGTCCACAGTTAGCCCCATTGTCCTGCCTCAGCTGCCTCTGTGAAT---AAGATGGGAGCCCCCCCTGAGGGAAAAGTTCCTTTGGTGAGAGTAGAGAGGCCATCAGACCACCTCCAAACAAACCAGCTCCACCAGCCTCTGGCTCCTAAATAACAAACATCACCATCCAGAAATGTAAGGACTCAGCCCTGGTCAGCGTGGGAAAGGGTCTGTTTGTCTCCCT
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3936284 464 +   4820037 GGAGTCGCATCACCAGGG-AGCCACAACCCCATCCCGACCTCCTTCCTCTGTCCTGTGCTATCAATAAATAAGTTTCCCAGCCATCAATAATGATTAGAACCTCCTCCTCATATGCCAGCTCCAACCTCCACTAGGTATGATACAGGGGGCAGCCCTACCCCCCGGAATATACAAAATGTTACACAGATACTATATGTACACTGGGGAAGGGGGGTCACCCC-AGCAGCCCGTGCCCTCGCCTGCTCTACAGTTAGCCCCACTGTCCCGCCTCAGCTGCCTCTCTGAATAAGAAGATGCGAG-GCCCCCTGAGGGAAAAGTTGCTTTGGTGAGAGTAGGGAGGTCATCAGGCCTTCTCCAAACAAACCAGCTCCACCAGCCTCTGGCTCTTCAATAACAAACATCACCGTCCAGAAATTTAAGGACTCGGCCCTGGTCAAGATGGCAAAGGGTCTGTTTGTCTCCCT
i macNem1.NW_012011533v1         C 0 I 302
s cerAty1.NW_011999477v1          9798054 464 +  10730278 GGAGTCGCATCACCAGGA-AGTCACAACCCCATCCCGACCTCCTTCCTCTGTCCTGTGCTATCAATAAATAAGTTTCCCAGCCATGAATAATGATTAGAACCTCCTCCTCATATGCCAGCTCCAACCTCCACTAGGTACGATACAGGGGGCAGCCCTACCCCCCGGAATATACAAAATGTTACACAGATACTATATGTACACTGGGGAAGGGGGGTCACCCC-AGCAGCCCGTGCCCTCGCCTGCTCTACAATTAGCCCCACTGTCCCACCTCAGCTGCCTCTCTGAATAAGAAGATGCGAG-GCCCCCTGAGGGAAAAGTTGCTTTGGTGAGAGTAGGGAGGTCATCAGGCCTCCTCCAAACAAACCAACTCCACCAGCCTCTGGCTCTTCAATAACAAACATCACCGTCCAGGAATGTAAGGACTCGGCCCTGGTCAAGATGGCAAAGGGTCTGTTTGTCTCCCT
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1335635 442 +  24206276 GGAGTCGCATCAC--------CCACAACCCCATCCCTGCCTCCTTCCTCTGTACTATGCTAGCAATAAATAAGTTTCCCAGCCACA---AATGCTTAGAACCTTCTCCTCATATGCCAGCTCCAACCTCC-------ATGATACAGGGGGTGGCCCTA-CCCCAGGAATATACAAAATGTTACACAGATACTGTATGTACACTGGGGAAGGGGGGCCACCCC-AGCAGCCTGTGCCCTCACCTAGTCCACAGTTAGCCCCATTGTCCTGCCTCAGCTGCCTCTGTGAAT---AAGATGGGAG-CCCCCCTGAGGGAAAAGTTCCTTTGGTGAGAGTAGAGAGGCCATCAGACCACCTCCAAACAAACCAGCTCCACCAGCCTCT-GCTCCTAAATAACAAACATCACCATCCAGAAATGTAAGGACTCAGCCCTGGTCAGCATGGGAAAGGGTCTGTTTGTCTCCCT
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3937797 464 +   4030761 GGAGTCGCATCACCAGGG-AGCCACAACCCCATCCCGACCTCCTTCCTCTGTCCTGTGCTATCAATAAATAAGTTTCCCAGCCATGAATAATGATTAGAACCTTCTCCCCATATGCCAGCTCCAACCTCCACTAGGTATGATACAGGGGGCAGCCCTACCCCCCGGAATATACAAAATGTTACACAGATACTATATGTACACTGGGGAAGGGGGGTCACCCC-AGCAGCCCGTGCCCTCGCCTGCTCTACAGTTAGCCCCACTGTCCCACCTCACCTGCCTCTCTGAATAAGAAGATGCGAG-GCCCCCTGAGGGAAAAGTTGCTTTGGTGAGAGTAGGGAGGTCATCAGGCCTCCTCCAAACAAACCAGCTCCACCAGCCTCTGGCTCTTCAATAACAAACATCACCGTCCAGAAATTTAAGGACTCGGCCCTGGTCAAGATGGCAAAGGGTCTGTTTGTCTCCCT
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1          4048180 462 +   5013933 GGAGTCACATCACTAGGG-AGCCACAACCCCATCCCCACCTCCTTCCTCTGTCCTGTGCTATCAATAAATAAGTTTCCCAGCCATAAATAATGATTAGAACCTCCTCCTCATATGCCAGCTCCAACCTCCACTAGGTACGATACA-GGGGCAGCCCTACCCCCCGGAATATACAAAATGTTACACAGATACTATATGCACACTGGGGAAGGGGGGCCACCCC-AGCAGCCGGTGCCCTCGTCTGCTCTACAGTTAGCCTCACTGTCCCACCTCAGCTGCCTCTCTGAATAAGAAGATGGGAG--CCCCCCGAGGGAAAAGTTGCTTTGGTGAGAGTAGGGAGGCCATCAGGACTCCTTCAAACAAACCAACTCCACCAGCCTCTGGCTCCTAAATAACAAACATCACCATCCAGAAATTTAAGCACTCAGCCCTGGTCAAGATGGCAAAGGGTCTGTTTGTCTCCCT
i colAng1.NW_012114844v1         C 0 C 0
s cebCap1.NW_016107979v1            10150 458 -   1024465 GGAGTTGCATCACCAGGG-AGCCACGACCCCAACCCCGCCTCCTTCCTCTGTCCTCTGCTATCAATAAA----TTTCCCAGCAACAAATAATTATTAAAACCTCCTCCCCATGTGCCAGTTCCAACCTCTGCTAGGTACAAAACAGGGGGCGCCCCTACCCCCCGGAATATACAACATGTTACACAGATACAATATGTACACTGGGGAAGGGGGGCCAGCCC-AGCAGCCCGTGTCCTCGCCTGGTCCACAGTTAGCGCCACTGTCCTGCCTCAGCTGCCACTCTGAATAAGAAGATGGGAG--CCCCCTGAGGGAAAAGTTGCTTTCGTGAGGGGAAGGAGGCCATCAGG-CTCCTCCAAACCAACCAACTCTAGCAGCCTCTGGCTCTTAAATAACAACCATCATCACCCAGAGATTTAAGGACTCAGCCCTGGTCAAGGTGGCAAAGGGTCTGTTGGTCTCCCC
i cebCap1.NW_016107979v1         C 0 C 0

a score=543130.000000
s hg38.chr15_KI270850v1_alt         49574 134 +    430880 CCATTAGACAGGGGTCTTGTCTTGCTACCCTAATGGTAAAGGGCTGACTGGGGAGGGGTTGTAGGGACATGGT-GGGGGTGAAGACTCCAGACCCACTTCTCCAGGCTTATGCTGACAGGGGCCTGCTTTTATTT
s panPan2.chr15                  23083245 134 -  99763055 CCATTAGACAGGGGTCTTGTCTTGCTACCCTAATCGTAAAGGGGTGACTGGGAAGGGGTGGTTGCTACATGGT-GTGGGTGAAGACTCCAGTACCACTTCTCCAGGCTTATGCTGACAGAGGCCTGGTTTTATTT
i panPan2.chr15                  C 0 I 26
s gorGor5.CYUI01015946v1           340873 134 -    378907 CCATTAGACAGGGGTCTTGTCTTGCTACCCTAATGGTAAAGGGGTGACTGGGAAGGGGTTGTAGGGACATGGT-GGGGGTGAAGACTCCAGACCCACTTCTCCCGGCTTATGCTGACAGGGGCCTGCTTTTATTT
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    28336 125 -     28805 CCATTAGACAGGGGTCTTGTCTTGCTACCCTAATGGTAAAGGGGTGACTGGAAAGGGGTGGTTGGTACATGGT-GGGAGCGAAGACTCCGGTCCCACTTCTCCAGGCTTATGCTGACAGAGGCCTG---------
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60013570 120 + 169600520 CCATTAGACAGGGGTCTTGTCTTGAGACCCTAATGGTAAAGGTG--------------TGGTTGGTACATGGT-GGGGGCAAAGACTCCAGACCCACTTCTCTAGGCTTATGCTGATAGGGGCCTGCTTTTATTT
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61608410 134 + 171882078 CCATTAGACAGGGGTCTTGTCTTGCTACCCTAATGTTAAAGGGGTAACTGGGAAGGGTTGGTTGGTACATGGT-GGGGGTGAAGACTCCAGACCCACTTCTCCAGGCTTATGCTGATAGGGGCCTGCTTTTATTT
i macFas5.chr7                   C 0 C 0
s cerAty1.NW_011999477v1          9798518 134 +  10730278 CCATTAGAC-GGGGTCTTGTCTTGCTACCCTAATGGTAAAGGGGTGACTGGGAAGGGGTGGTTGGTACATGGTGGGGGGCGAAGACTCTAGCCCCACTTCTCCAGGCTTATGCTGACAGGGGCTTGCTTTTATTT
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1336077 134 +  24206276 CCATTAGACAGGGGTCTTGTTTTGCTACCCTAATGTTAAAGGGGTAACTGGGAAGGGTTGGTTGGTACATGGT-CGGGGTGAAGACTCCAGACCCACTTCTCCAGGCTTATGCTGATAGGGGCCTGCTTTTATTT
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3938261 134 +   4030761 CCATTAGAC-GGGGTCTTGTCTTGCTACCCTAATGGTAAAGGGGTGACTGGGAAGGGGTGGTTGGTACATGGTGGGGGGCGAAGACTCTAGCCCCACTTCTCCAGGCTTATGCTGACAGGGGCTTGCTTTTATTT
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1          4048642 132 +   5013933 CCATTAGAT-GGGGTCTTGTCTTGCTACCCTAATGGTAAAGGGGTGACTGGGAAGGGGTGGTTGGTACATGGT--GGGGTGAAGACTCTAGCCTCACTTCTCCAGGCTTATGCTGACAGGGGCTTGCTTTTATTT
i colAng1.NW_012114844v1         C 0 C 0
s cebCap1.NW_016107979v1            10608 133 -   1024465 CCATTAGACAGGGCTCTTGTCTTGCTTCCCTAATAATAAAGGGGTGACTGGGAAGGGGTGGGGGGGACATGGT-GGGGGCGGAGACTCCAGCCCCCCTTCTCCAGGCCT-TGCTGACAGGGGCATGCTTTTATTT
i cebCap1.NW_016107979v1         C 0 C 0
e macNem1.NW_012011533v1          3936748 302 +   4820037 I

a score=70345.000000
s hg38.chr15_KI270850v1_alt         49708 28 +    430880 ATTTTTATTTTTATCCC-ATGAC-TTTTTT
s gorGor5.CYUI01015946v1           341007 28 -    378907 A-TTTTATTTTTATCCC-ATGATGTTTTTT
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    28461 22 -     28805 -GTTTTATTTTTATCAC-ATGAC------T
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60013690 28 + 169600520 AGTTTTATTTTTATCCC-ATGAC-ATTTTT
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61608544 28 + 171882078 ATTTTTATTTTTATCCC-ATGAT-GTTTTT
i macFas5.chr7                   C 0 C 0
s cerAty1.NW_011999477v1          9798652 28 +  10730278 ATTTTTATTTTTATCCT-ATGAC-TTTTTA
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1336211 28 +  24206276 GTTTTTAATTTTATCCC-ATGAT-GTTTTT
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3938395 28 +   4030761 ATTTTTATTTTTATCCC-ATGAC-TTTTAA
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1          4048774 28 +   5013933 ATTTTTATTTTTATCCC-ATGAC-TTTTTA
i colAng1.NW_012114844v1         C 0 C 0
s cebCap1.NW_016107979v1            10741 29 -   1024465 ATTTTTATATTTATCCCTATGAT-TTTTTT
i cebCap1.NW_016107979v1         C 0 I 34
e panPan2.chr15                  23083379 26 -  99763055 I
e macNem1.NW_012011533v1          3936748 302 +   4820037 I

a score=708.000000
s hg38.chr15_KI270850v1_alt         49736 4 +    430880 TAAA-
s gorGor5.CYUI01015946v1           341035 4 -    378907 TAAA-
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    28483 4 -     28805 TAAA-
i nomLeu3.chr6_GL398151_2_random C 0 I 5
s rheMac8.chr7                   60013718 5 + 169600520 TGAAA
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61608572 5 + 171882078 TGAAA
i macFas5.chr7                   C 0 C 0
s cerAty1.NW_011999477v1          9798680 5 +  10730278 AAAAA
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1336239 5 +  24206276 TGAAA
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3938423 5 +   4030761 AAAAA
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1          4048802 5 +   5013933 AAAAA
i colAng1.NW_012114844v1         C 0 C 0
e cebCap1.NW_016107979v1            10770 34 -   1024465 I
e panPan2.chr15                  23083379 26 -  99763055 I
e macNem1.NW_012011533v1          3936748 302 +   4820037 I

a score=38844.000000
s hg38.chr15_KI270850v1_alt         49740 26 +    430880 TCCTGTAACTAATTTTTCATAAC-TT--T
s panPan2.chr15                  23083405 26 -  99763055 TCCCATAACTTCCTTTTCATAAC-TT--T
i panPan2.chr15                  I 26 C 0
s gorGor5.CYUI01015946v1           341039 26 -    378907 TCCCGTAACTTCTTTTTCAGAAC-TT--T
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    28492 26 -     28805 TCCCATAACTTCCTTGTCATAAC-TT--T
i nomLeu3.chr6_GL398151_2_random I 5 C 0
s rheMac8.chr7                   60013723 26 + 169600520 TCCCATAACTCTTTTTTCATAAC-TTT--
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61608577 26 + 171882078 TTCCATAACTTGTTTTTCATAAC-TTT--
i macFas5.chr7                   C 0 C 0
s cerAty1.NW_011999477v1          9798685 21 +  10730278 TCTCATAACTTCTT----ATAAC-TT---
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1336244 26 +  24206276 TTCCGTAACTTGTTTTTCATAACTTT---
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3938428 21 +   4030761 TCTCATAACTTCTT----ATAAC-TT---
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1          4048807 22 +   5013933 TCTCATAACTTCTT----ATAAC-TT-T-
i colAng1.NW_012114844v1         C 0 C 0
e cebCap1.NW_016107979v1            10770 34 -   1024465 I
e macNem1.NW_012011533v1          3936748 302 +   4820037 I

a score=17948.000000
s hg38.chr15_KI270850v1_alt         49766 8 +    430880 TTAAAATA
s panPan2.chr15                  23083431 8 -  99763055 TTAAAATA
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           341065 8 -    378907 AAAAAAAA
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    28518 8 -     28805 TTAAAATA
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60013749 8 + 169600520 TAAAAAAC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61608603 7 + 171882078 -TAAAAAA
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3937050 8 +   4820037 TTAAAAAA
i macNem1.NW_012011533v1         I 302 C 0
s cerAty1.NW_011999477v1          9798706 8 +  10730278 AAAAAAAA
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1336270 8 +  24206276 TTTAAAAA
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3938449 8 +   4030761 AAAAAAAA
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1          4048829 8 +   5013933 AAAAAAAA
i colAng1.NW_012114844v1         C 0 C 0
e cebCap1.NW_016107979v1            10770 34 -   1024465 I

a score=65704.000000
s hg38.chr15_KI270850v1_alt         49774 19 +    430880 ACTTTTCATAAAACTTTTT
s panPan2.chr15                  23083439 18 -  99763055 -CTTTTCATAAAACATTTT
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           341073 19 -    378907 ACTTTTCATAAAACTTTTT
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    28526 18 -     28805 -CTTTTCATAAAACATTTT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60013757 19 + 169600520 ACTTTTCATAAAACTTTTT
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61608610 19 + 171882078 AAATTTCATACAACTTTTT
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3937058 19 +   4820037 ACTTTTCATAAAACTTTTT
i macNem1.NW_012011533v1         C 0 I 82
s cerAty1.NW_011999477v1          9798714 14 +  10730278 ACTTTTCATAAAAC-----
i cerAty1.NW_011999477v1         C 0 I 3
s chlSab2.chr29                   1336278 18 +  24206276 AATTTTCATACAACTTTT-
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3938457 17 +   4030761 ACTTTTCATAAAAC-TTT-
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1          4048837 19 +   5013933 ACTTTTCATAAAACTTTTT
i colAng1.NW_012114844v1         C 0 C 0
s cebCap1.NW_016107979v1            10804 16 -   1024465 ACTTTTCATAAAATTT---
i cebCap1.NW_016107979v1         I 34 C 0

a score=169659.000000
s hg38.chr15_KI270850v1_alt         49793 79 +    430880 TTT---TACTTTTTTTCCACAACTTTTTTT-TGCCAC---TTTTCCACAGTA-TTTTTTTATCCTGTAACTTTTTCATCCCACAACT
s panPan2.chr15                  23083457 79 -  99763055 TCT----ACTTTTTTTCCACAACTTCTTTT--GCCACAACTTTTCCACAGCA-TTTTTT-ATCCCATAACTTTTTCATCCCACAACT
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           341092 83 -    378907 TTTTTTTACTTTTTTCCCACAACTTTTTTT--GCCACAACTTGTCCACAGTA-TTTTTT-ATCCCGTAACTTTTTCATCCCACAACT
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    28544 78 -     28805 TCT----ACTTTTTTT-CACAACTTCTTTT--GCCACAGCTTTTCCACAGCA-TTTTTT-ATCCCATAACTTTTTCATCCCACAACT
i nomLeu3.chr6_GL398151_2_random C 0 C 0
s rheMac8.chr7                   60013776 66 + 169600520 ------------------TCCACTTTTGTTTTGTCACAACGTTTCCACAGCA--TTTTC-ACCCTATAACTTTTTCATCCCACAACT
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61608629 66 + 171882078 ------------------TCTACTTTTTTTTTGCCACAACTTCTCCACAGCA-TTTTTT-ATCTCATAACTTTTT-ACCGCACAGTT
i macFas5.chr7                   C 0 C 0
s cerAty1.NW_011999477v1          9798731 63 +  10730278 -----------------TTCTACTTTCTTG-----GCCGCTTTTCCACAGCA-TTTTTT-ATCCCATAACTGTTTCATCCCACAACT
i cerAty1.NW_011999477v1         I 3 I 21
s chlSab2.chr29                   1336296 66 +  24206276 -----------------TTCTACTTTTTTT-TGCCACAACTTCTCCACAGCA-TTTTTT-ATCTCATAACT-TTTTACCGCACAATC
i chlSab2.chr29                  C 0 I 3
s manLeu1.NW_012102632v1          3938474 63 +   4030761 -----------------TTCTACTTTTTTG-----GCCGCTTTTCCACAGCA-TTTTTT-ATCCCATAACTGTTTCATCCCACAACT
i manLeu1.NW_012102632v1         C 0 I 21
s colAng1.NW_012114844v1          4048856 62 +   5013933 -------------------CTACTTTTTTA-----GCCACTTTTCCACAGCATTTTTTT-ATCCCATAACTGTTTCATCCCACAACT
i colAng1.NW_012114844v1         C 0 I 22
s cebCap1.NW_016107979v1            10820 77 -   1024465 ---TTCTACTTTTTATCAACAACGTTTTTT--GCCACAACTTTTCCACA----TTTTTT-ATCCCATAACTTTTTTATCCCATAACT
i cebCap1.NW_016107979v1         C 0 C 0
e macNem1.NW_012011533v1          3937077 82 +   4820037 I

a score=3822.000000
s hg38.chr15_KI270850v1_alt         49872 2 +    430880 TT
s panPan2.chr15                  23083536 2 -  99763055 TT
i panPan2.chr15                  C 0 I 4
s gorGor5.CYUI01015946v1           341175 2 -    378907 TT
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    28622 2 -     28805 TT
i nomLeu3.chr6_GL398151_2_random C 0 I 4
s rheMac8.chr7                   60013842 2 + 169600520 TT
i rheMac8.chr7                   C 0 I 19
s macFas5.chr7                   61608695 2 + 171882078 TT
i macFas5.chr7                   C 0 I 3
s chlSab2.chr29                   1336365 2 +  24206276 TT
i chlSab2.chr29                  I 3 C 0
e cebCap1.NW_016107979v1            10897 0 -   1024465 C
e colAng1.NW_012114844v1          4048918 22 +   5013933 I
e manLeu1.NW_012102632v1          3938537 21 +   4030761 I
e cerAty1.NW_011999477v1          9798794 21 +  10730278 I
e macNem1.NW_012011533v1          3937077 82 +   4820037 I

a score=9338.000000
s hg38.chr15_KI270850v1_alt         49874 14 +    430880 AATTCCTGTTAACT
s panPan2.chr15                  23083542 13 -  99763055 AATTCCCGT-AACT
i panPan2.chr15                  I 4 C 0
s gorGor5.CYUI01015946v1           341177 13 -    378907 AATTCCTGT-CACT
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    28628 13 -     28805 AATTCCCAT-AACT
i nomLeu3.chr6_GL398151_2_random I 4 C 0
s macFas5.chr7                   61608700 13 + 171882078 AATTCCCAT-AACT
i macFas5.chr7                   I 3 I 2
s chlSab2.chr29                   1336367 13 +  24206276 AATTCCCAT-AACT
i chlSab2.chr29                  C 0 I 5
s cebCap1.NW_016107979v1            10897  1 -   1024465 -------------T
i cebCap1.NW_016107979v1         C 0 C 0
e colAng1.NW_012114844v1          4048918 22 +   5013933 I
e manLeu1.NW_012102632v1          3938537 21 +   4030761 I
e cerAty1.NW_011999477v1          9798794 21 +  10730278 I
e macNem1.NW_012011533v1          3937077 82 +   4820037 I
e rheMac8.chr7                   60013844 19 + 169600520 I

a score=2865.000000
s hg38.chr15_KI270850v1_alt         49888 1 +    430880 T
s panPan2.chr15                  23083555 1 -  99763055 T
i panPan2.chr15                  C 0 I 2
s gorGor5.CYUI01015946v1           341190 1 -    378907 T
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    28641 1 -     28805 T
i nomLeu3.chr6_GL398151_2_random C 0 I 2
s rheMac8.chr7                   60013863 1 + 169600520 T
i rheMac8.chr7                   I 19 C 0
s macFas5.chr7                   61608715 1 + 171882078 T
i macFas5.chr7                   I 2 C 0
s macNem1.NW_012011533v1          3937159 1 +   4820037 T
i macNem1.NW_012011533v1         I 82 C 0
s cerAty1.NW_011999477v1          9798815 1 +  10730278 T
i cerAty1.NW_011999477v1         I 21 C 0
s chlSab2.chr29                   1336385 1 +  24206276 A
i chlSab2.chr29                  I 5 C 0
s manLeu1.NW_012102632v1          3938558 1 +   4030761 T
i manLeu1.NW_012102632v1         I 21 C 0
s cebCap1.NW_016107979v1            10898 1 -   1024465 T
i cebCap1.NW_016107979v1         C 0 C 0
e colAng1.NW_012114844v1          4048918 22 +   5013933 I

a score=352980.000000
s hg38.chr15_KI270850v1_alt         49889 72 +    430880 TTTTAGTTTGTGTTCTTTTAATAAACACACTTACATAGTTACA-----ATTTTGTAAGAATAAAAACCGATTACCTC
s panPan2.chr15                  23083558 77 -  99763055 TTTTAGTTTATGTTCCTTTAATAAACACACTTGCATAGTTACATTACAATTTTGTAAAAATAAAAACTGATTATCTC
i panPan2.chr15                  I 2 C 0
s gorGor5.CYUI01015946v1           341191 72 -    378907 TTTTAGTTTGTGTTCTTTTAATAAACACACTTACATGGTTACA-----ATTTTGTAAGAATAAAAACCGATTATCTC
i gorGor5.CYUI01015946v1         C 0 C 0
s nomLeu3.chr6_GL398151_2_random    28644 71 -     28805 TTTTAGTTTATGTTCCTTTAATAAACACACTTGCATAGTTACA-----ATTTTGTAAAAAT-AAAACCGATTATCTC
i nomLeu3.chr6_GL398151_2_random I 2 n 2
s rheMac8.chr7                   60013864 72 + 169600520 TTTTAGTTTGCATTCTTTTAATAAACACACTTTCATAATTACA-----ATTTTGTAAGAATAAAAACTGATGTGCTC
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61608716 72 + 171882078 TTTCAGTTTGTGTTCTTTTAATAAATACACTTGCATAGTTACA-----ATTTTGTAAAAATAAAAACCGATGATCTC
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3937160 72 +   4820037 TTTTAGTTTCTGTTCTTTTAATAAACACACTTGCATAGTTACA-----ATTTTGTAAAAACAAAAGACGATTATCTC
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9798816 72 +  10730278 TTTTAGTTTCTGTTCTTTTAATAAACACACTTGCATAGTTACA-----ATTTTGTAAAAACAAAAGCCGATTATCTC
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1336386 72 +  24206276 TTTCAGTTTGTGTTCTTTTAATAAATACACTTGCATAGTTACA-----ATTTTGTAAAAATAAAAACCGATGATCTC
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3938559 72 +   4030761 TTTTAGTTTCTGTTCTTTTAATAAACATACTTGCATAGTTACA-----ATTTTGTAAAAACAAAAGCCGATTATCTC
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1          4048940 72 +   5013933 TTTTAGTTTCTGTTCTTTCAATAAACACACTTGCATAGTTACA-----ATTTTGTAAAAATAAAAGCTGGTTATCTC
i colAng1.NW_012114844v1         I 22 C 0
s cebCap1.NW_016107979v1            10899 77 -   1024465 TATTAGTTTGCGTTCTTTTAATGAACACACTTGCATAGCTATATTACCATTTCATAAAAATAAAAACACATTATCTC
i cebCap1.NW_016107979v1         C 0 C 0

a score=534322.000000
s hg38.chr15_KI270850v1_alt         49961 133 +    430880 ATGCCAAGCATGCCGAGAATTTGCAGAGTCTCAATACCC--AATACTATAGTTTTCAAGACACACAAAATTTTTAGGCAAAA-CAGCACCTTGAAACAATTTAATAATGTATTACATTACAGTAGCatcacagcag
s panPan2.chr15                  23083635 136 -  99763055 ATGCCAAGAGTGCCCAGCATTTTCACAGTCTCAATACTTTTAATACTATAGTTTTCAAGACACATAAAATTTTAAGGCAAAAACAGCACTTTGCAACAATTTAATAATTTATTACATTACAGTAGCATCACAGTAG
i panPan2.chr15                  C 0 C 0
s gorGor5.CYUI01015946v1           341263 135 -    378907 ATGCCAAGCACGCCCAGCATTTGCACAGTCTCAATACCTTTAATACTATAGTTTTCAAGACACACAAAATTTTTAGGCAAAA-CAGCACCTTGAAACAATCTAATAATGTATTACATTACAGTAGCatcacagaag
i gorGor5.CYUI01015946v1         C 0 C 0
s rheMac8.chr7                   60013936 135 + 169600520 ATGCCAAGAGTGCCCAGCATTTGCACAGTCTCAATACCTTTAATACTATAGTTTTC-AGACACACTAAATTTTAAGGCAAAAATGGCAGTTTGCAACAATTTCATAATTTATTACATTACAGTAGCatcacagcag
i rheMac8.chr7                   C 0 C 0
s macFas5.chr7                   61608788 135 + 171882078 ACGCCAAGTGTGCTCAGCATTTGCACAGTCTCAATACCTTTAATGCTATAGTTTTCAAGACACACAAAATTTTAAGGCAAAAACAACACTTTGCAACAATTTCATAATTTATTACATTACAGTA-tatcatgatag
i macFas5.chr7                   C 0 C 0
s macNem1.NW_012011533v1          3937232 135 +   4820037 ATGCCAAGCGTGCCCAGCATTTGCACAGTCTCAATACATTTAATTCCATAGTTTTGAAGACACACAAAA-TTTACGGCAAAAACAGCACTTTGCAACAATTTCCTAATTTATTACATTACAGTAGCATCACAGTAG
i macNem1.NW_012011533v1         C 0 C 0
s cerAty1.NW_011999477v1          9798888 135 +  10730278 ATGCCAAGCGTGCCCAGCATTTGCACAGTCTCAATACATTTAATACCATAGTTTTGAAGACACACAAAA-TTTACGGCAAAAACAGCACTTTGCAACAATTTCCTAATTTATTACATTACAGTAGCATCACAGTAG
i cerAty1.NW_011999477v1         C 0 C 0
s chlSab2.chr29                   1336458 135 +  24206276 ATGCCAAGTGTGCTCAGCATTTGCACAGTCTCAATACTTTTAATGCTATGGTTTTCAAGATACACAAAATTTTAAGGCAAAAACAACACTTTGCAACAATTTCATAATTTATTACATTACAGTA-tatcatgatag
i chlSab2.chr29                  C 0 C 0
s manLeu1.NW_012102632v1          3938631 135 +   4030761 ATGCCAAGCGTGCCCAGCATTTGCACAGTCTCAATACATTTAATACCATAGTTTTGAAGACACACAAAA-TTTACGGCAAAAACAGCACTTTGCAAAAATTTCCTAATTTATTACATTACAGTAGCATCACAGTAG
i manLeu1.NW_012102632v1         C 0 C 0
s colAng1.NW_012114844v1          4049012 135 +   5013933 ATGCCAAGCGTGCCCAGCATTTGCACAGTCTCAATACCTTTAATACCATAGTTTTCAAGACACACAAAA-TTTACGGCAAAAACAGCACTTTGCAACAATTTCCCAATTTATTACATTACAGTAGCATCACAGTAG
i colAng1.NW_012114844v1         C 0 C 0
s cebCap1.NW_016107979v1            10976 136 -   1024465 ATGCCAAGTGTGCCCAGCATTTGCAGAGTCTGGATACCTTTAATACTATTTTTGTCAAGACACACAAAATTTTAAGGCAAACACAGCACTTTGCAGCAATTCAATAATTTATTACATTACAGGAGCatcacagcag
i cebCap1.NW_016107979v1         C 0 C 0
e nomLeu3.chr6_GL398151_2_random    28715   2 -     28805 I

a score=2420980.000000
s hg38.chr15_KI270850v1_alt    50094 498 +    430880 cagtcaataatgccactttagacaaaaat----cagtatttccattatgcattctgtgtataagaattcataaatcgg-taaaagtcattctaagaaaacttggcaaatacagctttggactggaattggcatttctttGTCTACTTTTCCTTCCCCTAGATTCTTTGTTTTAAACTACAGTATTCATATTTTAAAATGTTTTAAATTATTTTAAGACGTTAATATAGCAGTTACATTTTTGAATAGTTAT-----TTGAAAGTGA--CTGTAAGATAAAGTTTTAGAGAATCTATTAT-------GGATAGGGTTGATTTACATTTTCACATTTTCTAAAAATCAGCTTTGGTTTTAGAACTGA-----TTGTTTTTCATTTTGGGAAAACCTACCAGGTTTAATCAATTACTTTAAAAATAATTATCATATTTTGCAGTCTTTAAATAGGTGTTTTGATTCTTTACTCCCTACAGAAATTCAAATTTATTCAGTTGAAGTCACATTTTAAAATTCTATGT
s panPan2.chr15             23083771 503 -  99763055 CAGTGAATAATCccactttaggcaacagtgtttctgtatttccattatacattctgtttacaggaattcatcaattgg-taaaagtcattttaagaaaacttggcaaaaaaaggtttggactggaattggcatctctttCTCTACTTTTCCTTCCTCCAGTTTCTTTGTTTTAAACTACAGTATTCATATCTTAAAATGTTTCAAGTTATTTCAAAACATTAACATAGCAGTTACATTTTTGAATAGTTATATTCTTTTAAAGCAA--CTGTAAGATA--GTTTTAGAGAAAGTATTAT-------GGATAGGGCTGAGTTACATTTTCACATTTTCTAAAAGTCAGCTTTGGTTTTAGAACTGA-----TT-TTTTTCATTTCTGGAAAACCTATCAGGTTTCATCAGATACTTTAAAAATAATGACCATATATTGCAATCTTTAAATAGCTATTTTGATTCTTTACTTCTTACAGAAAC-AAAATTTATTCAGTTGAACTCACATTTTAAAATTCTATAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      341398 497 -    378907 cagtcaataatgccactttagacaaaaat----cagtatttccatcatgcattctgtgtataagaattcataaatcgg-taaaagtcattctaagaaaacttggcaaatacagctttggactggaattggcatttctttCTCTACTTTTCCTTCCCCTAGATTCTTTGTTTTAAGCTACAGTATTCATATTTTAAAATGTTTTAAATTATTTTAAGACATTAATATAGCAGTTACATTTTTGAATAGTTAT-----TTGAAAGTGA--CTGTAAGATAAGGTTTTAGAGAATCTATTTT-------GGATAGGGTTGATTTACATTTTCACATTTTCTAAAAATCAGCTTTGGTTTTAGAACTGA-----TTGTTTTTCATTTCAGGAAAACCTATCAGGTTTAATCTATTACTTTAAAAATAATTATCATATATTGCAGTCTTTAAATAGGTATTTTGATTCTTTACTTCCTACAGAAATTCAAATTTATTCAGTTGAACTCACATTTT-AAATTCTATCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22725065 493 - 121039945 CAGTCAATAATGCCACTTTAGGCAACAGTGTTTCAGTATTTCCATTATACATTCTGTTTATAAGAATTCATAAGTTGG-TAAAAGTCATTCTAAGAAAACTTGGCAAATAAAGGTTTGGACTGGAATTGGCATCTC----TCTACTTTTCCTTC----AGTTTCTTTGTTTAAAACTACAGTATTCATATTTTGAAATGTTTTAACTTATTTCAAAACATTAATATAGCAGTAACATTTTTGAATAGTTAT-----TTTAAAGTGA--CTGTAAGATAAAGTTTTAGAGAAAGTATTAT-------GGATAGGGCTGAGTTACATTTTCACATTTTCTAAAAATCAGCTTTGGTTTTAGAACTGA-----TT-TTTTTCATTTCTGGAAAACCTATCAGGTTTAATCAGATACTTTAAAAATAATGACCATATATTGCAATCTTTAAATAGGTATTTTGATTCTTTACTTCCTACAGAAATTCAACTTTATTCCGTTGAACTCACATTTTAAAATTCTATAT
i nomLeu3.chr6              I 9922 C 0
s rheMac8.chr7              60014071 508 + 169600520 ctgtcaataatggcactttagacaacagtctttcagtatttccattatacattctgtttacaagaattcataaattgg-taaaagtcattctaagaaaacttggcaaataaagctttggactggaattgccatttctttCTCTACTTTTCCTTCCCCCAGTTTCTTTGTTTTAAACAACAGAATTCATATTTTAAAATGTTGTAACTTATTTCAAAATATTAACATAGCAGTTACATTTTTGAATAGTTATATTATTTTAAAGTGACTCTGTAACATAAAGTCTTAGAGAAACTACTAT-------GGATAGGGCTGATGCACGTTTTCACATTTTCTAAAAATCAGCATTGGTTTTAGAACTGA-----TT-ATTTTCATTTCTGGAAAACCTATCAGGTTTAATCAGATACTTTAAAAATAATGACCATATATTGCAATCTTTAAATAGGTATTTTGATTCTTTACTTCCTACAGAAATTCAAATTTATTCAGTTGAACTCACATTTTAAAATTCTATAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61608923 497 + 171882078 cagtcaataatgccactttagacaaaagtctttcagtatttccattatacattctgttaataagaattcataaattgg-taaaagtcattctaagaaaacttggcaaataaagct-----------ttggACTTTATTTCTCTACTTTTCCTTCCCCCAGTTTCTTTGTTTTAAACTACAGTATTCATATTTTAAAATGTTTTAACTTATTTCAAAACATTAACATAGCAGTTACATTTTTGAATAGTTATATTATTTTAAAGTAACTCTGTAAGATAAAGTTTTGGAGAAACTATTAT-------GGATAGGGCTGATTTATATTTTCACATTTTCTAAAAATCAGCTTTGGTTTTAGAACTGA-----TT-TTATTCATTTCCAGAAAATCTATCAGGTTTAGCCAGATACTTTAAAAATAATTATCATATATTGCAATCTTTTAACAGGTATTTTGATTCTTTATTTCCTACAGAAATTAAAATTTATTCAGTTGAACTCACATTTTAAAATTATGTAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1     3937367 512 +   4820037 CAGTCAATAATTCCAGTTTACACaaaagtttttcagtatttccattatacattctgttgacaggaattcataaattgg-taaaagtcattctaagaaaactcagcaaataaagcttggcattggaattggcatctctttCTCTACTTTTCCTTCCCCCAGGTTCTTTGCTTTAAACTACAGTATTCATATTTTAAGATGTTTTAACTTATTTTAAAACATTAACATAGCAGTTATATTTTTGAATAGTTATATCATCTTAAAGTGACTCTGTAAGATAAAGTTTTAGAGAAAATATTAC-------GGATAGGGCTGATTTACATTTTCACATTTTCTAAAAATCAGCTTTAGTTTTTGAACTGA-TTTTTT-TTTTTCATTTCTGGAAAACCTATCAGGTTTAATCAGATACTTTAAAAATAATGACAATATAGTGCAATCTTTAAATAGGTATTTTGATTCTTTACTTCCTACAGAAATTCGATTTTATTCAGTTGAACTCACATTTTAAAATTCTGTAT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1     9799023 511 +  10730278 CAGTCAATAATTCCAGTTTACACaaaagtttttcagtatttccattatacattctgttgacaggaattcataaattgg-taaaagtcattctaagaaaactcagcaaataaagcttggcattggaattggcatttctttCTCTACTTTTCCTTCCCCCAGGTTCTTTGCTTTAAACTACAGTATTCATATTTTAAGGTGTTTTAACTTACTTTAAAACATTAACATAGCAGTTACATTTTTGAATAGTTATATCATCTTAAAGTGACTCTGTAAGATAAAGTTTTAGAGAAAATATTAT-------GGATAGGGCTGATTTACATTTTCACATTTTCTAAAAATCAGCTTTAGTTTTTGAACTGA--TTTTT-TTTTTCATTTCTGGAAAACCTATCAGGTTTAATCAGATACTTTAAAAATAATGACCATATATTGCAATCTTTAAATAGGTATTTTGATTCTTTACTTCCTACAGAAATTCAATTTTATTCAGTTGAACTCACATTTTAAAATTCTGTAT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              1336593 498 +  24206276 cagtcaataatgccactttagacaaaagtctttcagtgtttccattatacattctgttaataagaattcataaattggttaaaagtcattctaagaaaacttggcaaataaagct-----------ttggACTTTATTTCTCTACTTTTTCTTCCCCCAGTTTCTTTGTTTTAAACTACAGTATTCATATTTTAAAATGTTTTAACTTATTTCAAAACATTAACATAGCAGTTACATTTTTGAATAGTTATATTATTTTAAAGTAACTCTGTAAGATAAAGTTTTGGAGAAACTATTAT-------GGATAGGGCTGATTTATATTTTCACATTTTCTAAAAATCAGCTTTGGTTTTAGAACTGA-----TT-TTATTCATTTTCAGAAAATCTATCAAGTTCAGCCAGATACTTTAAAAATAATTATCATATATTGCAATCTTTTAACAGGTATTTTGATTCTTTACTTCCTACAGAAATTAAAATTTATTCAGTTGAACTCACATTTTAAAATTCTGTAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3938766 513 +   4030761 CAGTCAATAATTCCAGTTTACACAaaagttgttcagcatttccattatacattctgttgacaggaattcataaattgg-taaaagtcattctaagaaaactcagcaaataaagcttggcattggaattggcatttctttCTCTACTTTTCCTTCCCCCAGGTTCTTTGCTTTAAACTACAGTATTCATATTTTAAGATGTTTTAACTTATTTTAAAACATTAACATAGCAGTTACATTTTTGAATAGTTATATCATCTTAAAGTGACTCTGTAAGATAAAGTTTTAGAGAAAATATTAC-------GGATAGGGCTGATTTACATTTTCACATTTTCTAAAAATCAGCTTTAGTTTTAGAACTGATTTTTTT-TTTTTCATTTCTGGAAAGCCTATCAGGTTTAATCAGATACTTTAAAAATAATGACCATATATTGCAATCTTTAAATAGGTATTTTGATTCTTTACTTCCTACAGAAATTCAGTTTTATTCAGTTGAACTCACATTTTAAAATTCTGTAT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1     4049147 512 +   5013933 CAGTCAATAATTCCAGTTTACACAAAAGCTTTTCAGTATTTCCATTATACATTCTGTTGACAGAAATTCATAAATTGG-TAAAAGTCATTCTAAGAAAACTCAGCAAATAAAGCTTTGCATTGGAATTGGCATTTCTTTCTCTACTTTTCCTTCCCCCAGGTTCTTTGCTTTAAACTACAGTATTCATATGTTAAGATGTTTTAACTTATTTTAAAACATTAACATAGGAGTTACATTTTTGAATAGTTATATCATTTTAAAGTGACTCTGTAAGATAAAGTTTTAGAGAAAGTATTAT-------GGATAGGGCTGATTTCCATTTTCACATTTTCTAAAAATCAGCTGTGGTTTTAGAACTGA-TTTTTT-TTTTTCATTTCTGGAAAACCTGTCAGGTTTAATCAGATACTTTAAAAATAATGACCATATATTGCAATCTTTAAATAGGTATTTTCATTCTTTACTTCCTACAGAaattcaattttattcagttgaattcacatttaaAAATTCTGTAT
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1       11112 498 -   1024465 cagtcagtaatgccgctttagacaaaggc---tcaggatttccatcttacgttctgttcccaagagttcatacattgg-taaaagtcattcttaggaaacttggcaactaaagctttggactggaattggcatttctttCTCTACTTTTCCTTCCCCTGGTTTCT----TTTAAACTATGACATTCATATTTTAAAATGTT-TAGGTAATTTCAAAACATTAAGATAGCAGTTACATGTTTTAATAGTTAT----CTTGAAAATGACTCT-TAAGATAAAGTTTTGGAGAAGCTATATTATGGATAGGATAGGACTGATTTACATTTTCAAATTTTCTTAAAATCAGCTTTGGTTTCAGAACTGA----TTT-TTATTCATTTCTGGAAAATCTATCAGTTTTAATGAAATCCTTTAAAAATGATTATCATATATTGCAATCTTTAAATAGGTATTTTAATTCTT-----CCTACAGGAATTGAAATTCATTCAGTTGAACCCACATTTGAAAATTCTATGT
i cebCap1.NW_016107979v1    C 0 I 1147

a score=54999.000000
s hg38.chr15_KI270850v1_alt    50592 12 +    430880 TCCTGCTGAACT
s panPan2.chr15             23084274 12 -  99763055 TTCTGATGAACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      341895 12 -    378907 TTCTGCTGAACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22725558 12 - 121039945 TTCTGATGAACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60014579 12 + 169600520 TTCTGATGATCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61609420 12 + 171882078 TTCTGATGAACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1     3937879 12 +   4820037 TTCTGATGAACT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1     9799534 12 +  10730278 TTCTGATGAACT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              1337091 12 +  24206276 TTCTGATGAACT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3939279 12 +   4030761 TTCTGATGAACT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1     4049659 12 +   5013933 TTCTGATGAACT
i colAng1.NW_012114844v1    C 0 C 0
e cebCap1.NW_016107979v1       11610 1147 -   1024465 I

a score=967344.000000
s hg38.chr15_KI270850v1_alt    50604 194 +    430880 CTAACCTTCTAATGTTGCCTTCTAAGCAAATTAAAGGCTGCCTTATACTGAATGAGGTAGAGAACAAATACTTGGCTGAATGAGGTACTGCAAAAGACT-GCATGCACTTTGAAGAAAGACTTGAGTTATTGTCATAGGATTTCCATTCTCTTTAGCTTTTTCTTAAACATATGACAAAATACCTACACAAAGAG
s panPan2.chr15             23084286 194 -  99763055 CTAACCTTTTAGTGTTGCCTTCTAAGCAAATTGAAAGCTGCCTTATACTGAATGAGGAAGAGAACAAATACTTGGCTGAATGAGGTATTGCAAAAGACT-GCATGAGCTTTGAAGAAAGACTTAAGTTTTTGTCATAGGATTTCCATTCTTTTTAGCTTTTTCTGAAACATAGGACAAAATACCTACACAAAGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      341907 193 -    378907 CTAACCTTCTAATGTTGCCTTCTAAGCAAATTGAAAGCTGCCTTATCCTGAATGAGGAAGAGAACAAATACTTGGCTGAATGAGGTACTGCAAGAGACT-GCACGCACTTTGAAGAAAGACTTGAGTTATTGTCATAGGATTTCCATTCTCTTTAGC-TTTTCTTAAACATATGACAAAATACCTACACAGAGAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22725570 194 - 121039945 CTAACCTTCTAATGTTGCCTTCTAAGCAAATTGAAAGCTGCCTTATACTGAATGAGGAAGAGAACAAATACTTGGCTGAATGAGGTATTGCAAAGGACC-GCATGAGCTTTGAAGAAAGACTTAAGTTATTGTCACAGGATTTCCATTCTTTGTAGCTTTTTCTGAAACACAGGACAAAATACCTACACAAAGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60014591 193 + 169600520 CTAAACTTCTAATGTTGTCTTCTAAGCAAATTGAAAGCTGCGTTATACTGAGTGAGGAAGAGAACAAATACTT-GCTGAATGAGGTATTGCAAAAGACT-TCATGCACTTTGATGAAAGACTTAAGTTATTGTGATATGATTTCCATTCTTTTTAATTTTGTCTTAAACATACGACAGTATACCTACACAAAGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61609432 194 + 171882078 CTAACCTTCTAATGTTGCCTTCTAAGCAAACTGAAAGCTGCCTTATACTGAATGAAGAAGAGAACAAATACTTGGCTGAATGAGGTATTGCAAAAGACT-GCATGCACTTTGAAGAAAGACTTAAGTTATTGTGATATGATTTCCATTCTTTTTAGCTTTGTCTTAAACATATGACAAAATACCTACACAAAGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1     3937891 191 +   4820037 CTAACCTTCTAATGTTGCCTTCTAAGCAGATTGAAAGCTGCCTTATACCGAATGAGGAAGAGAACAAATACTTGGCTGAATGAGGTATTGC-AAAGACT-GCATG--CTTTGAAGAAACACTTAAGTTATTGTCATAGGATTTCCATTCTTTTTAGGTTTTTCTGAAACATAGGACAAAATCCCTACACAAAGAG
i macNem1.NW_012011533v1    C 0 I 1442
s cerAty1.NW_011999477v1     9799546 191 +  10730278 CTAACCTTCTAATGTTGCCTTCTAAGCAGATTGAAAGCTGCCTTATACCGAATGAGGAAGAGAACAAATACTTGGCTGAATGAGGTATTGC-AAAGACT-GCATG--CTTTGAAGAAACACTTAAGTTATTGTCATAGGATTTCCATTCTTTTTAGATTTTTCTGAAACATAGGACAAAATCCCTACACAAAGAG
i cerAty1.NW_011999477v1    C 0 I 458
s chlSab2.chr29              1337103 193 +  24206276 CTAACCTTCTAATGTTGCCTTCTAAGCAAATTGAAAGCTGCCTTATACTGAATGAAGAAGAGAACAAATACTT-GCTGAATGAGGTATTGCAAAAGACT-GCATGCACTTTGAAGAAAGACTTAAGTTATTGTGACATGATTTCTACTCTTTTTAGCTTTGTCTTAAACATATGACAAAATACCTACACAAAGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3939291 191 +   4030761 CTAACCTTCTAATGTTGCCTTCTAAGCAGATTGAAAGTTGCCTTATACCGAATGAGGAAGAGAACAAATACTTGGTTGAATGAGGTATTGC-AGAGACT-GCATG--CTTTGAAGAAACACTTAGGTTATTGTCATAGGATTTCCATTCTTTTTAGATTTTTCTGAAACATAGGACAAAATCCCTACACAAAGAG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1     4049671 185 +   5013933 CTAACCTTCTAATGTTGCCTTCTAAGCAGATTGAAAGCTGCCTTATACTGAATGAGGAAGAGAACAAATACTTGGCTGAATGAGGTATTGC-AAAGATT-GCATGCGCTTTGAAG----ACTTAAGTTATTGTCATAGGATTTCCATTCTTTCTAGCTTTTTCTGAAACAT--GACAAAATACCTACACAAAG--
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1       12757 193 -   1024465 CTAACCTTCTGATGTTGCCTTCTAAGCCAATTGAAAGCTGCCTTCTACTGAATGAGGAGGAGAACAAATACTTGGCTGAATGAAGTACTGCAAAGGACTCGCATGCACTTTGAAGAAAGGCTTAAGTCACTGTCATATGACTTCCATTCTTTTTAGATTTTTCTTAAATAGATGACAAAATACCTACACAGAG--
i cebCap1.NW_016107979v1    I 1147 C 0

a score=23542.000000
s hg38.chr15_KI270850v1_alt    50798 8 +    430880 TCGTATTT
s panPan2.chr15             23084480 8 -  99763055 TGGTATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      342100 7 -    378907 TGGTA-TT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22725764 8 - 121039945 TGGTATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60014784 8 + 169600520 CAGTATTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61609626 8 + 171882078 TGGTATTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              1337296 8 +  24206276 TGGTATTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3939482 8 +   4030761 TGGTATTT
i manLeu1.NW_012102632v1    C 0 I 472
s colAng1.NW_012114844v1     4049856 8 +   5013933 TGGTATTT
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1       12950 8 -   1024465 TGATATTT
i cebCap1.NW_016107979v1    C 0 C 0
e cerAty1.NW_011999477v1     9799737 458 +  10730278 I
e macNem1.NW_012011533v1     3938082 1442 +   4820037 I

a score=1017285.000000
s hg38.chr15_KI270850v1_alt    50806 370 +    430880 GAATTAATATAGTATATTTATTTTTCAGACTGACATTCATCTTA--------AATATGCCAGTATGTGATTTAATCCACAGGTACCTGATGAACACATTATTGTCAGATTGGTTACAGTTGCTAAACGCTATCTGAAGGTCATTCCTAGTCATTTATACGTGTCAGGGTAAAAGTGAAGCGATTTGAACTATAAAAATACCTTTGAAATAA----------------TTTATCAATGTATTAGATAAGCTCAGTTTCAGAATGATAAACAAAAACTGTTAGACCAAATAACTTGGCTAATTAACAGTGGTACGATTTCTAGCCCGAGGGTTTAAAATGGAGTTAAAGTAAGTGTCTTTAAACTGAACTCAAAGAATGCAAAAGCGGCAAGTTCA
s panPan2.chr15             23084488 370 -  99763055 CAGTTAATACAGTACATTTATTTTCCAGATTGACATTCAGCTTA--------AATATGCCAGTATGTGATTTAATTCATAGGTACCTGATGAACACATTATTGTCAGATTGGTTACAGTTGCTAAACGCTATCTGAAGGTCATTCCTAGTCATTTATCTTTATCAGGGTAAAAGTGAAGTGATTTGAACTATAAAATTTCCTTTGAAATAA----------------TTTATCAATGTATTAGGTAAACCCAGTTTCAGAATTATAAAGAAAAACTGTTAGACCAAATACGGTGGCTAATTAACAGTGGTACGATTTCTAGCCCGAGGGTTTAAAATGGACTTAAAGTAACTGTCTTTCAAGTGAACTCAAATAATGCAAAAGCGGCAAGTTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      342107 366 -    378907 GAGTTAATATAGTACATTTATTTTTCAGACTGACATTCAGCTTA--------AATATG-CAGTATGTGATTTAATCCACAGGTGCCTGATGAACACATTATTGTCAGATTGGTTACAGGTGCTAAACGCTATCAGAAGGTCATTCCTAGTCATTTATATGTGTCAGGGTAAAAGTGAAGTGATTTGAACTATAAAAATACC-TTGAAATAA----------------TTTATCAATGTATTAGATAAACTCAGTTTCAGAATGAT-AAGAAAAACTGTTAGACC-AATAATGTGGCTAATTAACAGTGGTTTGATTTCTAGCCTGAGGGTTTAAAATGGACTTAAAGTAACTGTCTTTAAACTGAACTCAAAGAATGCAAAAGCGGCAAGTTCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22725772 370 - 121039945 CAGTTAACATAGTACATTTATTTTCCAGATTGACATCCAGCTTA--------AATATGCCAGTGCGTGATTTAATCCATAGGTACCTGATGAACACATTATTGTCAGATTGGTTACAGATGCTAAACGCTATCTGAAGGTCATTCCTAGTCATTTATCTTTATCAGGGTAAAAGTGAAGTGATTTGAACTATAAAAATTCCTTTGAAATAA----------------TTTATGAATGTATTAGGTAAACCCAGTTTCAGAATTATAAAGAAAAATTGTTAGACCAAATAAGGTGGCTCATTAACAGTGGTACAATTTCTAGCCCAAGGGTTTAAAATGGACTTAAAGTAACTGTCTTTCAAGTGAACTCAAATAATGCAAAAGTGGCAAGTTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60014792 394 + 169600520 CAGCTAATACAGTACATTTATTTTCCAGATTGACATTCAACTTAAATATGACAATATGACAGTATGTGATTTAATCCATAGGTCCCTGATGAACACATTATTGTCAGTTTGGTTACAGATGCTAAACGCGATCTGAAGGTCATTCCTAGTCATTTATATGTGTCAGAGCAAAAGTGAAGTGATTGGAACTATAAAAATGCCTTTGAAATAATACATCAATGTATTAGTATATCAATGTATTAGGTAAAACCAGTTTCAGAATGATAAAGAAAAACTGTTAGACCAAATAAAATGGCTAATTAACAGTGGTACGCTTTCTAGCCCGAGGGTTTAAAATGGACTTGAAGTAACTGTCTTTCAAGTGAACTCAAATAATGTGAAAACGGCAAGTTCA
i rheMac8.chr7              C 0 I 5
s macFas5.chr7              61609634 370 + 171882078 CAGTTAATATAGTACATTTATTTTCCAGGCTGATATTCAGCTTA--------AATATGCCAGTATGTGATTTAATCCATAGGTCCCTGATGAACACATTATTGTCAGATTGGTTACAGATGCTAAATGCGATCTGAAGGTCATTCCTAGTCATTTATATGTGTCAGGGTAAAAGTGAAGTGACTGGAACTATAAAAATTCCTTCAAAATAA----------------TTTATCAATGTATTAGGTAAACCCAGTTTCAGAATGATAAAGAAAAACTGTTAGACCAAATAATGTGGCTAATTAACACTGGTACGATTTCTAGCCCGAGGGTTTTAAATGGACTTAAAGTAACTGTCTTTCAAGTGAACTCAAATAATGCAAAAGCGGCAAGTTCA
i macFas5.chr7              C 0 I 5
s chlSab2.chr29              1337304 370 +  24206276 CAGTTAATATAGTGCATTTATTTTCCAGGCTGATATTCAGCTTA--------AATATGCCAATATGTGATTTAATCCATAGGTCCCTGATGAACACATTATTGTCAGATTGGTTACAGATGCTAAATGCGATCTGAAGGTCATTCCTAGTCATTTATATGTGTCAGGGTAAAAGTGAAGTGACTGGAACTATAAAAATTCCTTCAAAATAA----------------TTTATCAATGTATTAGGTAAACCCAGTTTCAGAATGATAAAGAAAAACTGTTAGACCAAATAATGTGGCTAATTAACAGTGGTACGATTTCTAGCCCGAGGGTTTAAAATGGATTTAAAGTAACTGTCTTTCAAGTGAACTCAAATAATGCAAAAGCGGCAAGTTCA
i chlSab2.chr29             C 0 I 515
s colAng1.NW_012114844v1     4049864 359 +   5013933 CAGTTAATATAGTACATTTATTTTCCAGACTGACATTCAGCTTA--------AATATGCCAGTATGTGATTTAATCC-----------ATGACCACATTATTGTCAGATTGGTTACAGCTGCTAAACACTATCTGAAGGTCATTCCTAGTCATTTATATTTATCAGGGTAAAAGTGAAGTGATTTGAACTATAAAAATTCCTTTGAAATAA----------------TTTATCAATGTATTAGGTAAACCCAGTTTCAGAATGATAAAGAAAAACTGTTAGACCAAACAAGGTGGCTAATTAACAGTGGCACGATTTCTAGCCCGAGGGTTTAAAATGGACTTAAAGTAACTGTCTTTCAAGTGAACTCAAATAATGCAAAAGTGGCAAGTTCA
i colAng1.NW_012114844v1    C 0 I 5
s cebCap1.NW_016107979v1       12958 362 -   1024465 CAGTTAATATAGTAAATGTATTTTCCAGACTGACATTCAGC-TA--------AATATGCCTGTATGTGATTTACTCCACAGGAACCTGAGGAACGCATTATTGTCAGATTGGGTACAGACGCTAAACACTATGTCAAGGTCATTCCTAGTCATTTATATTTCTTAGGGTAAAAGTGAAGTGATTTGAACTATCAAAAGACCTTTGAAATAA----------------TTTATCAATGTATTAGATAAACCCAGTTTCAGAATGATTAAGAAAAACTGTTCCACCAAATAATGTGTCTGATTAACA-------GATTTCTAGCCCGAGGGCTGAAAATGGACTTAGAGTACCTGTCTTTAAACTGAACTCAAAGGATGCAAAAGCGGCAAGCTCA
i cebCap1.NW_016107979v1    C 0 C 0
e manLeu1.NW_012102632v1     3939490 472 +   4030761 I
e cerAty1.NW_011999477v1     9799737 458 +  10730278 I
e macNem1.NW_012011533v1     3938082 1442 +   4820037 I

a score=-350.000000
s hg38.chr15_KI270850v1_alt    51176 1 +    430880 G
s panPan2.chr15             23084858 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      342473 1 -    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22726142 1 - 121039945 C
i nomLeu3.chr6              C 0 C 0
s cebCap1.NW_016107979v1       13320 1 -   1024465 G
i cebCap1.NW_016107979v1    C 0 I 749
e colAng1.NW_012114844v1     4050223 5 +   5013933 I
e manLeu1.NW_012102632v1     3939490 472 +   4030761 I
e chlSab2.chr29              1337674 515 +  24206276 I
e cerAty1.NW_011999477v1     9799737 458 +  10730278 I
e macNem1.NW_012011533v1     3938082 1442 +   4820037 I
e macFas5.chr7              61610004 5 + 171882078 I
e rheMac8.chr7              60015186 5 + 169600520 I

a score=42392.000000
s hg38.chr15_KI270850v1_alt    51177 26 +    430880 -----ACAAGGCAAGAACAGGACCTTTAGTC
s panPan2.chr15             23084859 31 -  99763055 AAAATAGAAGGCAAGAACAGGACCTTAAGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      342474 26 -    378907 -----AAAAGGCAAGAACAGGACCTTTAGTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22726143 31 - 121039945 AAAATAGAAGGCAAGAACAGGACCTTAAGTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60015191 27 + 169600520 ----TAGAAGGCAAGAACAGGAACTTAAGTC
i rheMac8.chr7              I 5 C 0
s macFas5.chr7              61610009 27 + 171882078 ----TAGAAGGTAAGAACAGGACCTCAAGTC
i macFas5.chr7              I 5 C 0
s colAng1.NW_012114844v1     4050228 27 +   5013933 ----TAGAAGGCAAGAACAGGACCTTAAGTC
i colAng1.NW_012114844v1    I 5 C 0
e cebCap1.NW_016107979v1       13321 749 -   1024465 I
e manLeu1.NW_012102632v1     3939490 472 +   4030761 I
e chlSab2.chr29              1337674 515 +  24206276 I
e cerAty1.NW_011999477v1     9799737 458 +  10730278 I
e macNem1.NW_012011533v1     3938082 1442 +   4820037 I

a score=1040.000000
s hg38.chr15_KI270850v1_alt    51203  8 +    430880 CAT---------------------------------------------TTTAA
s panPan2.chr15             23084890  8 -  99763055 CAT---------------------------------------------TTTAA
i panPan2.chr15             C 0 I 466
s gorGor5.CYUI01015946v1      342500  8 -    378907 CAT---------------------------------------------TTTAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22726174  8 - 121039945 CAT---------------------------------------------TTTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60015218 53 + 169600520 CATGAAGTTTTAGCTGTTAATTCTTTCCCAAGCATCATAAAGTTATTATTTAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61610036  8 + 171882078 TAT---------------------------------------------TTTAA
i macFas5.chr7              C 0 C 0
e cebCap1.NW_016107979v1       13321 749 -   1024465 I
e colAng1.NW_012114844v1     4050255  0 +   5013933 C
e manLeu1.NW_012102632v1     3939490 472 +   4030761 I
e chlSab2.chr29              1337674 515 +  24206276 I
e cerAty1.NW_011999477v1     9799737 458 +  10730278 I
e macNem1.NW_012011533v1     3938082 1442 +   4820037 I

a score=1205.000000
s hg38.chr15_KI270850v1_alt    51211 2 +    430880 GC
s gorGor5.CYUI01015946v1      342508 2 -    378907 GC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22726182 2 - 121039945 AC
i nomLeu3.chr6              C 0 I 463
s rheMac8.chr7              60015271 2 + 169600520 GC
i rheMac8.chr7              C 0 I 45
s macFas5.chr7              61610044 2 + 171882078 AC
i macFas5.chr7              C 0 I 473
e cebCap1.NW_016107979v1       13321 749 -   1024465 I
e panPan2.chr15             23084898 466 -  99763055 I
e colAng1.NW_012114844v1     4050255 0 +   5013933 C
e manLeu1.NW_012102632v1     3939490 472 +   4030761 I
e chlSab2.chr29              1337674 515 +  24206276 I
e cerAty1.NW_011999477v1     9799737 458 +  10730278 I
e macNem1.NW_012011533v1     3938082 1442 +   4820037 I

a score=22602.000000
s hg38.chr15_KI270850v1_alt    51213 11 +    430880 CATAAATATTA
s panPan2.chr15             23085364 11 -  99763055 CATAAATATGG
i panPan2.chr15             I 466 C 0
s gorGor5.CYUI01015946v1      342510 11 -    378907 CATAAATATTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22726647 11 - 121039945 CATAAATATGG
i nomLeu3.chr6              I 463 C 0
s rheMac8.chr7              60015318 11 + 169600520 CATAAATATGG
i rheMac8.chr7              I 45 C 0
s macFas5.chr7              61610519 11 + 171882078 CATAAGTATGA
i macFas5.chr7              I 473 C 0
s cerAty1.NW_011999477v1     9800195 11 +  10730278 CATAAATATGG
i cerAty1.NW_011999477v1    I 458 C 0
s chlSab2.chr29              1338189 11 +  24206276 CATAAGTATGA
i chlSab2.chr29             I 515 C 0
e cebCap1.NW_016107979v1       13321 749 -   1024465 I
e colAng1.NW_012114844v1     4050255  0 +   5013933 C
e manLeu1.NW_012102632v1     3939490 472 +   4030761 I
e macNem1.NW_012011533v1     3938082 1442 +   4820037 I

a score=1670563.000000
s hg38.chr15_KI270850v1_alt    51224 498 +    430880 CACAAAATATGCCTCTAACTGAAACTGAGAGGTATAAAAACATATTTCACTCTTCGTAAAGAACTTTGTGAGGAAATATAACTCTGTGATTGT-ATAGACACTTT-CCTCATGACACTTTGACAGTCACAAACAGTAGATTGCGCTGCAGTTTGTAAACATTTTACGTTGCATAAACTGCTCCTTGATTTTCAAATGTAGTATAATACTGTCTACT-AAAACTCCTTTTTGTTTCAACTAAGTACTCTCACATATATTAGTTTATAATAATGTTTG---TTATTATT------------------TTTAAAGTGTTCTCCATTCAAGGAAAAGAAGTAAATTCCTATGTCAGA----------TGGTTGAAGACTAGCTATTAGCCAGAGAGGTCTAGATGGTAAAA-TCCATCTTCTAGCCTCAAATAAGCTCCATGAACACAGAGGAATGCCAGGTGTCACACAGCTTTCCTTCACTCGAATTCATTCTTGACTAGAGCCTGTATATGCCTGTTCCAGGGGCATTTAAACT
s panPan2.chr15             23085375 508 -  99763055 CACAAAATATGCCTCTAACTGAAACTGAGAGGTATAAAAACATATTTCACTGTTCGTGAAGAACTCTGTGAGGAAATATAACTCTGTGATTCT-ATAGACACTTTTCCTCATAATACTTTGACTTTCACAAACATTAGATTGCACTGCGGTTTGTAAACATTTTAAGTTGCATAAACTTCGCCTTGATTTTCATGGGTAGTATAATACTGTCTACT-AAAACTCCTTTATGTTTCAACTGAGTACTCTCTCATATATTGGTTTATAATAATGGTTG---TTATTATT------------------TTTAAAGTGTTTTCCATTCAAAGAAAAGAAGTAAATTCCTATGTCAGAGTAACCAATGTGGTTGAAGAATAGGTATTAGCCAGAGAGGTCTAGATGGTAAAAATCAATCTTCTAGCCTCAAAGAAGCTCCATGAACAGAGAGGAAGGCCAAGTGTCACACAGCTTTCCTTCACTTGAATTCATTCTTGACTAGAGCCTGTAT--GCCTCTTCCAGGGACATTTAAACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      342521 493 -    378907 CAC-AAATATGCCTCTAACTGAAACTGAGAGGTATAAAAACATATTTCACTCTACGTAAAGAACTTTGTGAGGAAATATAACTCTGTGATTGTAATAGACACTTT-CCTCATGACACTTTGACAGTCACAAACAGTAGATTGCGCTGCAGTTTGTAAACATTTTAAGTTGCATAAACTGCTCCTTGATTTTCAAATGTAGTATAATACTGTCTACT-AAAATTCCTTTTTGTTTCAACTAAGTACTCTCACATATATTTGTTTATAATAATGTTTG---TTATTATT------------------TTTAAAGTCTTTTCCATTCAAGAAAAAG-----AATTCCTCTGTCAGA----------TGGTTGAAGACTAGGTATTAGCCAGAGAGGTCTAGATGGTAAAA-TCCATCTTCTAGCCTCAAATAAGCTCCATGAACATAGAGGAATGCCAGGTGTCACACAGCTTTCCTTCACTCGAATTCATTCTTGACTAGAGCCTGTATATGCCTGTTCCAGGGACATTTAAACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22726658 501 - 121039945 CACAAAATATGTCTCTAACTGAAACCGAGAGGTATAAAAATGTATTTCACTTT--GTGAAGAACTCTGTGAGGAAATATAA--CTGTGATTGT-TTAGACACTTTTCCTCATAATACTTTGACTTTCACAAACAGTAGATTGCACTGCGGCTTGTAAACATTTTAAGTTGCATAAACTTCACCTTGATTTTCGTATGTAGTATAATACTGTCTACT-AAAACTCCTTTTTGTTTCAACTAAGTACTGTCACATATGTTGGTTTATAATAATG---G---TTATTATT------------------TTTAAAGTGTTTTCCATTCAAAGAAAAGAAGTAAATTCCTATGTCAGAGTAACCAATGTGGTTGAAGAATAGGTATTAGCCAGAGAGGTCTAGATGGTAAAAACCAATCTTCTAGCCTCAAAGAAGCTCCATGAACATAGAGGAAGGCCAAGTGTCACACAGCTTTCCTTCACTCGAATTCATTCTTGACTAGAGACTGTAT--GCCTCTTCCAGGGACATTTAAGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60015329 493 + 169600520 CAC--AATATACCTCTAACTGAAATCGAGAGGTATAAAAACATATTTCACTGTTCATAAAGAACTTTGTGAGGAAATATAACTCTGTGAATGT-GTAGACACATTTCCTCATGATACTGTGATATTCACAAACAGTAGATTGCACTGCAGTTTGTAAACATTTTAAGTTGCATAAACATCTCCTTGATTTTCAAATGTAGTATAATACTGTCTACTAAAAACTCCTTTTTGTTTCAACTAAGTACTCTCACATATATTGGTTTATAATAATGGTTG---TTA------------------------TTAAAGTGTTTTCCATTCAAAGAAAAGAAGTAAATTCCTCTGTCAGAGTAACCAATGTGGTTGAAGAA-------TAGCCAGAGAGGTCTAGATGGTAAAA-TCAATCTTCTAGCCTCAAAGAAGCTCCATGAACATAGAGGAATGCCAGGTGTCACACAGCTTTCCTTCACTCGAATTCATTCTTGACTAGAGCCTGTAT--GCCTGTTCCAGGGACATTTAAACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61610530 504 + 171882078 CACAAAATATGCCTCTAACTGAAACTGAGAGGTATAAGAACATATTTCACTCTTCATAAAGAACTTTGTGAGGAAATATAACTCTGTAATTGT-ATAGATACTTTTCCTCAAAATACTCTGACATTCACAAACAGTAGATTGCACTGCAGTTTGTACACATTTTAAGTTGCATAAACATCTCCTTGATTTTCAAATGTAGTAGAATACTGTCTACT-AAAACTTCTTTTTGTTTCAACTAAGTACTCTCACATATATTGGTTTATAATAATGGTTG---TTA---TT------------------TTTTAAGTGTTTTCCATTCAAGGAAAAGAAGTAAATTCCTATGTGAGAGTAACCTATGTGGTTGAAGAAAAGGTATTAGCCAGAGAGGTCTAGATGGTAAAA-TCAATATTCTAGTCTCAAAAAAGCTCCATGAACATAGAGGAATGCCAGGTGTCACACAGCTTTCCTTCACTAGAATTAATTCTTGACTAAAGCCTGTAT--GCCTGTTCCAGGGACATTAAAACT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1     9800206 506 +  10730278 CACAAAATATGCCTCTAACTGAAACCGAGAGGTATAAAAACATATTTCACCCTTCGTAAAGAACTTTGTGAGGAAATATAACTCTGTGATTGT-ATAGATACCTTTACTCATAATACTTTGACATTCACAAACAGTAGATTGCATTGCAGTTTGTAAATATTTTAAGTTGCATAAACTTCTCCTTGATTTTCAAATGTAGTATAACACTGTCCACT-AAAACTGCTTTTTGTTTCAACCAA-TACTCTCACATGTATTAGTTTATTAAAATGGTTG---TTATTATT------------------TTTAAAGTGTTTTCCATTCAAGGAAAAGAAGTAAATTCCTGTGTCAGATTAACCAATGTGGCTGAAGAATAGGTATTAGCCAGAGAGGTCAACATGGTAAAA-TCAATCTTCTAGCCTCAAAGAAGCTCCGTGAACATAGAGGAATGCCAGGTGTCACACAGCTTTCCTTCACTCGAATTCATTCTTGACTAGAGCCTGTAT--GCCTGTTCCAGGGGTATTTAAACT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              1338200 504 +  24206276 CACAAAATATGCCTCTAACTGAAACTGAGAGGTATAAAAACATATTTCACTCTTCATAAAGAACTTTGTGAGGAAATATAACTCTGTAATTGT-ATAGACACTTTTCCTCAAAATACTCTGACATTCACAAACAGTAGATTGCACTGCAGTTTGTACACATTTTAAGTTGCATAAACATCTCCTTGATTTTCAAATGTAGTAGAATACTGTCTACT-AAAACTTCTTTTTGCTTCAACTAAGTACTCTCACATATATTGGTTTATAATAATGGTTG---TTA---TT------------------TTTTAAGTGTTTTCCATTCAAGGAAAAGAAGTAAATTCCTATGTGAGAGTAACCTATGTGGTTGAAGAAAAGGTATTAGCCAGAGAGGTCTAGATGGTAAAA-TCAATATTCTAGCCTCAAAAAAGCTCCATGAACATAGAGGAATGCCAGGTGTCGCACAGCTTTCCTTCACTAGAATTCATTCTTGACTAAAGCCTGTAT--GCCTGTTCCAGGGACATTTAAACT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3939962 506 +   4030761 CACAAAATATGCCTCTAACTGAAACCGAGAGGTATAAAAACATATTTCACTCTTCGTAAAGAACTTTGTGAGGAAATATAACTCTGTGATTGT-ATAGATACTTTTACTCATAATACTTTGACATTCACAAACAGTAGATTGCATTGCAGTTTGTAAATATTTTAAGCTGCATAAACTTCTCCTTGATTTTCAAATGTAGTATAACACTGTCCACT-AAAACTGCTTTTTGTTTCAACCAA-TACTCTCACATGTATTAGTTTATTAAAATGGTTGTTATTA---TT------------------TTTAAAGTGTTTTCCATTCAAGGAAAAGAAGTAAATTCCTATGGCAGATTAACCAATGTGGCTGAAGAATAGGTATTAGCCAGAGAGGTCTAGGTGGTAAAA-TCAGTCTTCTAGCCTCAAAGAAGCTCCGTGAACATAGAGGAATGCCAGGTGTCACACAGCTTTCCTTCACTCGAATTCATTCTTGACTAGAGCCTGTAC--GCCTGTTCCAGGGGTATTTAAACT
i manLeu1.NW_012102632v1    I 472 C 0
s cebCap1.NW_016107979v1       14070 520 -   1024465 CACAAAATATGCCTCTAACTGAAAACGAAAGATATCAAAACATATTTCACTCTTGGTAAAGAACTTGGTGAGGAAATAAAACTCTGTGATTGT-ACAGACACTTTTCCTGATACTACGTTGACATTCACAAACAGTAGATGGCA-TGCAGTCTATAAACATTTTAAGTTGCATAAA------CTTGATTTTCAAATATAGTACAATTCT-CCTACT-GAGACTCCTTTTTGTTTCAGCCTAGTACTCTCACATATCTTCGTTTATAATAATGCCTGTGGTTATTATTTTTTGTTTGTGATTGTTGTTTAAAGTCCTTTTAATTGAAGAAAATGAAGGCAATTCCTATGTCAGAGTAACCAAGGTGGTTGAAGAATAGGTATTAGCCAGAGAAGTCTGGATGGTCAAA-TCAGTCTTGTAGCCTCAAAGAAGCTCCATGAACACAGAGGGATGCCAGGTGTCACACGGCTTTCCTGCACTCTAATTCATTTTTGACTAGAACCTGTAT--GCCTGTTCTAGGGACATTTAAACT
i cebCap1.NW_016107979v1    I 749 I 349
e colAng1.NW_012114844v1     4050255   0 +   5013933 C
e macNem1.NW_012011533v1     3938082 1442 +   4820037 I

a score=44340.000000
s hg38.chr15_KI270850v1_alt    51722 16 +    430880 CTTAAAGGATTTCTTC
s panPan2.chr15             23085883 16 -  99763055 CTTAAAGGATTTCTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      343014 16 -    378907 CTTAAAGGATTTCTTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22727159 16 - 121039945 CTTAAAGGATTTCTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60015822 16 + 169600520 CTGAAAGGATTTCTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61611034 16 + 171882078 CTGAAAGGATTTCTTA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1     9800712 16 +  10730278 CTGAAAGGGTTTCTTA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              1338704 16 +  24206276 CTGAAAGGATTTCTTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3940468 16 +   4030761 CTGAAAGGGTTTCTTA
i manLeu1.NW_012102632v1    C 0 C 0
e cebCap1.NW_016107979v1       14590 349 -   1024465 I
e colAng1.NW_012114844v1     4050255  0 +   5013933 C
e macNem1.NW_012011533v1     3938082 1442 +   4820037 I

a score=610670.000000
s hg38.chr15_KI270850v1_alt    51738 175 +    430880 TGATCTTTACTAAATACATTAAGGAGAACGCCAACCAGTGCCCTTTTGTGTACTGGGACATGTAGTCATGTGATTAAAACAGGGAACATGAACTCTGACTTTAAAATGTATTGTAGATAT-AAATGCTCTCAGCTAGAAAAGGTTTTCCACATCCACAGTCA-TGATGGGAGCCTTT
s panPan2.chr15             23085899 176 -  99763055 TGATCTTTACTAAATACCTTAAGAAGAATGCCAACCGGTGCCCTTTTGTGTACTGGGACATATACTCATGTGATTAAAACAGGTAACATGAACTCTGACTTTAAAATGTATTGTAGATAT-AAATGCTCTAAGCTAGAAAAGGTTTTCCACATCCACAGTCAATGATGGGAGCCTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      343030 175 -    378907 TGATCTTTACTAAATACATTAAGGAGAATGCCAACCAGTGCCCTTTTGTGTACTGGGACATGTAGTCATGTGATTAAAACAGGGAACACGAACTCTGACTTTAAAATGTATTGTAGATAT-AAATGCTCTCAGCTAGAAAAGGTTTTCCACATCCACAGTCA-TGATGGGAGCCTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22727175 171 - 121039945 GGATCTTTACTAAATACCTTAAGAAGAATGACAACCAGTGCTCTTTTGTGTACTGGGACATATATTCATGTGACTAAAACAGGTAACATGAACTCTGACTTTAAAA-----TGTAGATAT-AAATGCTCTAAGCTAGAAAAGGTTTTCCACATCCACAGTCAATGATGGGAGCCTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60015838 177 + 169600520 TGATCTTTACTAAGTACATTAAGAAGAAAGCCAACCAGTGCCCTTTTGTGTACTGGGACATGTAGTCATGTGATTAAAACAGGTAACATGGACTCTGACTTTAAAACGTATTGTAGACATAAAATGCTCTAGGCTGGAAAAGGTTTTCTACATCCACAGTCAATGATGGGAGTCTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61611050 174 + 171882078 TGATCTTTACTAATTACATAAAGAAGAATGCCAACCAGTGCCCTTTTGTGTGATGGGACCTGTAGTCATGTGATTGAAATAGGTAACATGGACTCTGATTTTAAAATGTATTGTATATAT---TTGCGCTAAGCTAGAAAAGGTTTTCCCTATCCACAGTCAATGATGGGAGCCTTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1     9800728 176 +  10730278 TGATCTTCACTAAATACACTAAGAAGAATGCCAAGCAGTGCCCTTTTGTGTACTGGGACATGTAGTCATGTGATTAAAACAGGTAACATGAACTCTGACTTTAAAATGTATTGTAGATAT-AAATGTTCTAAGCTAGAAAAGGTTTTCCGCATCCACAGTCAATGATGGGAGCCTTT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              1338720 176 +  24206276 TGATCTTTACTAATTACATAAAGAAGAATGCCAACCAGTGCCCTTTTGTGTGATGGGACCTGTAGTCATGTGATTGAAATAGGTAACATGGACTCTGATTTTAAAATGTATTGTAGATAT-AAATGCGCTAAGCTAGAAAAGGTTTTCCCTACCCACAGTCAAAGATGGGAGCCTTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3940484 176 +   4030761 TGATCTTCACTAAATACACTAAGAAGAATGCCAAGCAGTGCCCTTTTGTGTACTGGGACATGTAGTCATGTGATTAAAACAGGTAACATGAACTCTGACTTTAAAATGTATTGTGGATAT-AAATGCTCTAAGCTAGAAAAGGTTTTCCGCATCCACAGTCCATGATGGGAGCCTTT
i manLeu1.NW_012102632v1    C 0 C 0
s cebCap1.NW_016107979v1       14939 176 -   1024465 TGATCTTTACTAAATACATTAAGAAGAATGCCAACCAGTGCTCTTTTATGTACTGAGACATGGAGTCATGTCATTGAAACAGGTAACATAAACTCTGACTTTACCATGTATTATAGATAT-AAATGCTCTAAGCTAGGAAAGGTTTTTCACATCTACAGTCAAAGATGGGAGCCTTC
i cebCap1.NW_016107979v1    I 349 C 0
e colAng1.NW_012114844v1     4050255   0 +   5013933 C
e macNem1.NW_012011533v1     3938082 1442 +   4820037 I

a score=1682836.000000
s hg38.chr15_KI270850v1_alt    51913 395 +    430880 CATTCCTCAGAAATAATCCCTTTTCA-GGTCATCAAAAAAGAGTACAACTGCCACAGCTCATGAGGCAGTATCTTCATGAGCCCAGAGCACATACAAATCCTAAGGGAACTACCGTAGTACA---GCGCTCATTCTTGGCACCGGAACAAATGAAACATATTCTATCCTGCACACACCTGCCAAAGCAGGCCACTTTCCTCTTCTGGGAGATTTAAAAACCTCCCCAAAATGTTATTACTCCCATCCCCAATACACAGAAAAAGGGGGAAAGGCTGTTTCCAGTGCTCCACCTTTAAACAACTGTAAATGTCAGTACTCACAGTGGCATATTACAAAGTAATAGAC--CGCGCACTTGAGGGCAAACCACATATTGAGCTAATGAAGAGCTCACTGTGATT
s panPan2.chr15             23086075 398 -  99763055 CATTCCTCAGAAATAATCCCTTTTTTTGGTCATCGAGAAGGGGTACAACTGCTGCAGCTCATGATGCAATATCTTCATGAGCCCAGAGCACACACAAATCCTAAGGAAGCCACCATAGTACA---GCGCTCATTCTTGGCACCAGAACAAATGAAACACACTGTATCCTGCACACACCTGTCAGAGCAGGCCACTTTCCTCTTCTGTGAGATTTAAAAAGCTCCCCAAAATGTTATGACTCCCATCCCCAATACACAGAAAATAGGGGAAAGGCTGTTTCCAGTTCTCGGCCTTTAAACAACTCTAAATGTCAGTACTCACAGTGGCATATTACAAAGTAATAAACGGTGCGCACTTGAGGGCAAACCACATATTGAGCTAATGAAGAGCTCACTGTGGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      343205 393 -    378907 CATTCCTCAGAAATAATCCCCTTTTA-GGTCATCAAAAAAGAGGACAACTGCCACAGCTCATGATGCAATATCTTCATGAG-CCAGAGCACATGCAAATCCTAAGGGAACTACCATAGTACA---GTGCTCATTCTTGGCACCGGAACAAATGAAACATATTCTATCCTGCACACACCTGCCAGAGCAGGCCACTTTCCTCTTCTGGGAGATTTAAAAACCTCCCCAAAATGTTATTACTCCCATCCCCAATACACAGAAAA-AGGGGAAAGGCTGTTTCTAGTGCTCCACCTTTAAACAACTGTAAATGTCAGTACTCACAGTGGCATATTACAAAGTAATAGAC--CGCGCACTTGAGGGCAAACCACACATTGAGCTAATGAAGAGCTCACTGTGATT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22727346 397 - 121039945 CATTCCTCAGAAATCATCCCTTTTTA-GGTCATCAAGAAAGGGTACAACCGCTGCAGCTCGTGATGCAATATCTTCATGAGCCCAGAGCCCATACAAATCCTAAGGGAGCCACCATAGTACA---GCGCTCATTCTTGGCACCAGAACACATGAAACACACTCTATCCTACGCACACCTGCCAGAGCAGGCCACTTTCCTCTTCCGTGAGATTTAAAAAGCTCCCCAAAATGTTATTACTCCCATCCCCAATACACAGAAAATAGGAGAAAGGCTGTTTCCAGTTCTCAGCCTTTAAACAACTCTAAAGGTCAGTACTCACAGTGGCATATTACAAAGTAATAAACAGTGCTCACTTGAGGGCAAACCACATATTCAGCTAATGAAGAGCTCACTGTGGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60016015 397 + 169600520 CATTCCTCAGATAAGATCTCTTTTTA-GGTCATCGGCAAAGAGTACAATTGCTGCAGATCATGATGCAATATCTTCATAAGCCCAGAGCACACACAAATCCTAAGGGAACTACCATAGTACT---GCGCTCCTTTTTGGCAACGAAACAAATGAAACATATTCTATCCTGCACACACCTGCCAGAGCAGGCCACTTTCCTCTTCTGTGAGATTTAAAAAGCTCCCCAAAATGTTATTAGTCCCATCCCCAACACACAGAATAAGGGGGAAAGGCTGTTTCCAGTTCTCGGCCTTTAAACAACTCTAAATGTCAGTACTCACAGTGGCATATTACAAAGTAAGAAACAGTGCGCACTTGAGGGAAAACCACATATTGAACTAATGAAGAGCTCACTGTGATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61611224 397 + 171882078 CCTTCCTCAGAAATAATCCCTTTTTA-GGTCATTGAGAAAGAGTACAAAGGCCACAGCTCATGATGCAATATCTTCATGAGCCCAGAGCACATACAAATCCTAAGGGAACTACCATAGTACC---GCGCTCATTCTTGGCACCAGAACGAAGGAAACACACTGTATCCTGCAGGCACCTGCCAAAGCAGGCCACTTTCCTCTTCTGTGAGATTTAAAAAGCTCCCCCAAATGTTATTACACCCATCCCCAATACACAGAAAATAGAGGAAAGGCTGTTTCCAGTTCTCAGCCTTTAAACAACTGTAAATGTCACTACTCACAGTGGCATATTACAAAGTAATAAACAGTGTGCACTTGAGGGCAAACCATATATTGAGCTAATGAAGAGCTCGCTGTGATT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1     9800904 399 +  10730278 CATTCCTCAGAAAGAATCCC-TTTTA-GGTCATTGAGAAAGAGTCCAACTGCTGCAGCTCATGCTGCGATATCTTCATGAGCCCAGAGCACATACAAATCCTCAGGGAACTACCATAGTACCATAGTACTCATTCCTGGCACCAGAACAAATGAAACACACTCTATCCTGCACACACCTGCCAGAGCAGGCCACTTTCCTCTTCTGTGAGATTTAAAAAGCTCCCCAAAATGTTATCACCCCCATCCCCAGTACACAGAAAATAGGGGAAAGGCTGTTTCCAGTTCTCGGCCTTTAAACAACTCTAAATGTCAGTACTCACAGTGGCATATTACAAAGTAAGAAACAGTGCGCACTTGAGGGCAAACCACATACTGAGCTAATGAAGAGCTCACTGTGATT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              1338896 397 +  24206276 CCTTCCTCAGAAATAATCCCTTTTTA-GGTCATTGAGAAAGAGTACAACGGCCACAGCTCATAATGCAATATCTTCATGAGCCCAGAGCACATACAAATCCTGAGGGAACTACCATAGTACC---GCGTTCATTCTTGGCACCAGAACGAAGGAAACACACTGTATCCTGCGCGCACCTGCCAAAGCAGGCCACTTTCCTCTTCTGTGAGATTTAAAAAGCTCCCCCAAATATTATTACTCCCATCCCCAATACACAGAAAATAGAGGAAAGGCTGTTTCCAGTTCTCAGCCTTTAAACAACTGTAAACATCACTACTCACAGTGGCATATTACAAAGTAATAAACAGTGTGCACTTGAGGGCAAACCATATATTGAGCTAATGAAGAGCTCACTGTGATT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3940660 395 +   4030761 CATTCCTCAGAAAGAATCCCTTTTTA-GGTCATTGAGAAAGAGTCCAACTGCTGCAGCTCATGCTGCGATATCTTCATGAGCCCAGAGCACATACAAATCCTCAGGGAACTACCATAGTACC---GCGCTCATTCCTGGCACCAGAACAAATGAATCACACTCTATCCTGCACACACCTGCCAAAGCAGGCCACTTTCCTCTTCTGTGAGATTTAAAAAGCTCCCCAAAATGTTATCACCCCCATCCCCAATACACAGAAAATAGGGGAAAGGCTGTTTCCAGTTCTTGGCCTTTAAACAACTCTAAATGTCAGTACTCACAGGGGCATATTACAAAGTAAGAAAC--TGCGCACTTGAGGGCAAACCACATACTGAGCTAATGAAGAGCTCACTGTGATT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1     4050255 397 +   5013933 CATTCCTTGGAAAGAATCCCTTTTTA-GGTCATTGAGAAAGAGTCCAACTGCTGCAGCTCATGCTGCAATATCTTCATGAGCCCAGAGTACATACAAATCCTAAGGGAACTACCATAGTACA---GTGCTCATTCCTTGCACCAGAACAAATGAAACACACTCCATCCTGCACACACCTGCCAGAGCAGGCCACTTTCCTCTTCTGTGAGATTTAAAAAGCTCCTCAAAATGTTATTACTCCCATCCCCAATACACAGAAAATAGGGGAAAGGCTGTTTCCAGTTCTCGGCCTTTAAACAACTCTAAATGTCGGTACTCACAGTGGCATATTACAAAGTAAGAAACAGTGCGCACTTGAGGGCAAACCACATATTGAGCTAATGAAGAGCTCACTGTGATT
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1       15115 389 -   1024465 TATTCCTCAGAAATCATCCCTTTTTA-GGTCATCAAAAAAGAGCACAGCTGCCGCAGCTCACAATGCAGTATCTTCATGAGCCCAGAGCACAGGAAAACCCTAAAAGAACTGCCACAGCACA---GCGCTTGTTCTTGGCATGGGAATGAATCAA--ATACTCCATTCTGCACATACCTGCCAGAGCAGGCCATTTTCCTCTTCTGTGAGATGTTAAAAGCTCCCCAAAATGTTATTACTCCATT------TGCACAGAAAATGGAAGAAAGGCTGTTTCCAGTTCTCGGCTTTTCAACAACTCTAAATGTCAGTACTCATAGTGGCATCTTACAAAGTAATAAACAGTGTGCACGTGAGGACAAAGCACATATTGAGCTAATTAAGAGCTCACTGTGATC
i cebCap1.NW_016107979v1    C 0 C 0
e macNem1.NW_012011533v1     3938082 1442 +   4820037 I

a score=1053805.000000
s hg38.chr15_KI270850v1_alt    52308 217 +    430880 AGGATTCGATCAAACATAACAGCAGAACATAAGGAAATTTTATCTGAATTCCGTAATGAATATACAGGCTGTACTAACA-TTAAAAAAGCATGGCAGCCTATCCCAAACCAGCAAGAACAGTTGTGTGCATACAGTGGG-TCTTTGTGTGTTTGAACTCCCACCACATAAGGGCAAACTCGATATGCATGCTAACGTCCTATAATTATCAAATTAAA-----AA-----
s panPan2.chr15             23086473 222 -  99763055 AGGATTCGATCAAATGTAACAGCAGAACATAAGCACATTTTATCTGAATTCTGTAATGAATATACATGCTGCAATAACA-TTAAAAAAGCATGGCAGCCTATTCCAAACCAGCCAGAATAGTTTTGTGCAAATAGTGGG-TCTTTGTGTGTTTGAACTCCCACCACCTAAGGGCAAACTCGATATGCATGCTAATGACCTACAATTATCAAATTAAAAAACGAA-----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      343598 217 -    378907 AGGATTCGATCAAACATAACAGCAGAACATAAGGAAATTTTATCTGAATTCCATAATGAATATACATGCTGTACTAACA-TTAAAAAAGCATGGCAGCCTATCCCAAACCAGCAAGAACAGTTGTGTGCGTATAGTGGG-TTTTTGTGTGTTTGAACTCCCACCACATAAGGGCAAACTCGATATGCATGCTAACGTCCTATAATTATCAAATTAAG-----AA-----
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22727743 217 - 121039945 AGGATTCAATCAAACATAACAGCAGAACATAAGCACATTTTATCTGAATTCTGTAATGAATATACATGCTGCACTAACA-TTAAAAAAGCATGGCAGCCTATTCCAAATCAGCAAGAATAGTTTTGTGCAGATAGTGGG-TCTTTGTGTGTTTGAACTCCCACCACCTAAGGGCAAACTCGATATGTGTACTAATGACCTACAATTCTCAAAAAAGA-----AA-----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60016412 218 + 169600520 AGGATCCGATCAAACATAATATCAGAGCATAAGCAAATTTTATCTGAATTCCATAATGAATATACATGCCGCAATAACATCAAAAAAAGCATGGCAGCCTATTCCAAACCAGCAAGAATAATTTTGTGCAAATAGTGGG-TCTTTGTGTGCTTGAACTCCCACCAGGTAAGGGCAAACTCGATATGTGAGCTAATGACTTACAATTATCAAATTAAA-----AA-----
i rheMac8.chr7              C 0 I 5
s macFas5.chr7              61611621 218 + 171882078 AGGATTCGAGCAAACATAATATCAGAACATAAGCAAATTTTATCTGAATTCTGTAATGAACATACATGCTGCAAAAACATTTTAAAAACCATGGCAGCCTATTCCAAACCAGCAAGAATAATTTTGCGCAAATAGTGGG-TCTTTGTGTGCTTGAACTCCCACCAGGTAAAGGCAAACTCGATATGCGAGCTAACGACTTACAATTATCAAATTAAA-----AA-----
i macFas5.chr7              C 0 I 5
s macNem1.NW_012011533v1     3939524 216 +   4820037 AGGAATCGATCAAACATAATAGCAGAACATAAGCAAATTTTATCTGAATTCTGTAATGAATATACATGCTGCAATAACA-TTTAAAAAGCATGGCAGCCTATTCCAAACCAGTAAGAATAGTTTTGTGCAAATAGTGGG-T-TTTGTGTGTTTGAACTCCCACCATGTAAGGGCAAACTCGATATGTGAGCTAATGACCTACAATTATCAAATTAAA-----AA-----
i macNem1.NW_012011533v1    I 1442 I 28
s cerAty1.NW_011999477v1     9801303 213 +  10730278 AGGATTCGATCAAAC--AATAGCAGAACATAAGCCAATTTTATCTGAATTCTGTAATGAATATACATGCTGCAATAACA-TTTAAAAAGCATGGCAGCCTATTCCAAACCAGTAAGAATAGTTTTGTGCAAATAGTGGG-T-TTTGTGTGTTTGAACTCCCACCACGTAAGGGCAAACTCGATATGCGAGCTAATGACCTACAATTATC-AATTAAA-----AA-----
i cerAty1.NW_011999477v1    C 0 I 4
s chlSab2.chr29              1339293 218 +  24206276 AGGATTCGATCAAACATAATATCAGAACATAAGCAAATTTTATCTGAATTCTGTAATGAACATACATGCTGCAAAAACATTTTAAAAACCATGGCAGCCTATTCCAAACCAGCAAGAATAATTTTGCACAAATAGTGGGCC-TTTGTGTGCTTGAACTCCCACCAGGTAAAGGCAAACTCGATATGCGAGTTAATGACTTACAATTATCAAATTAAA-----AA-----
i chlSab2.chr29             C 0 I 5
s manLeu1.NW_012102632v1     3941055 214 +   4030761 AGGAATCGATCAAACATAATAGCAGAACATAAGCAAATTTTATCTGAATTCTGTAATGAATATACATGCTGCAATAACA-TTTAAAAAGCAGGGCAGCCTATTCCAAACCAGTAAGAATAGTTTTGTGCAAATAGTGGG-T-TTTGTGTGTTTGAACTCCCACCATGTAAGGGCAAACTCGATATGCGAGCTAATGACCTACAATTATCAA--TTAA-----AA-----
i manLeu1.NW_012102632v1    C 0 I 5
s colAng1.NW_012114844v1     4050652 217 +   5013933 AGGATTTGATCAAACATCATAGCAGAACATAAGCAGATTTTATCTGAATTCTGTAATGAATATACATGCTGCAATAACA-TTTAAAAAGTATGGCAGCCTATTCCAAACCAGTAAGAATAGTTTTTTACAAATAGTGGG-TCTTTGTGTGTTTGAACTCCCACCATGTAAGGGCAAACTGGATATGCCAGCTAATGACCTACAATTATCAAATTAAA-----AC-----
i colAng1.NW_012114844v1    C 0 I 4
s cebCap1.NW_016107979v1       15504 221 -   1024465 AGGATTCCATCAACTATCATAGCAGAACATAAGCAAATTGTATCTGAATTTCATAATGAACATACATGCTGCAATAACA--TTAAAAACCATGGCAGCCTATTTCAAACTAGGGAGAATGGTTTTGTGCCACTAGTGGG-TCTTTTTGTGTTTGAACTCCCACCACGTAAGGGCAAACTCGATAGGCATGCTAATGACCTACGATTATCAAATTAAA-----AATGAAA
i cebCap1.NW_016107979v1    C 0 C 0

a score=285999.000000
s hg38.chr15_KI270850v1_alt    52525 87 +    430880 AATGCTAAAAGATGCCAGAGTGAACATGAGAGAAAGA----------CCCACTCTCATTTAACTTtttacaaataaatttaaattataaattagaaa
s panPan2.chr15             23086695 87 -  99763055 AATTCTAAAGGATGCCAGAGTGAACATCAGGGAAAGA----------CCAAATCTCCCTTAACTTTTTACAAATAAATTTAAACGGTAAGTTAGAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      343815 87 -    378907 AATGCTAAAAGATGCCAGAGTGAACATGAGAGAAAGA----------CCCACTCTCATTTAACTTTTTACAAataaatttaaactataaattagaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22727960 87 - 121039945 AATGCTAAAGGATGCCAGAGTGAACATCAGGGAAAGA----------CCAACTCTCCCTTAACTTTTTACAAATAAATTTAAACTGTAAATTAGAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60016635 74 + 169600520 AATGCTAAAGGATGTCAGAGTGAACATCAGGAAAAGA----------TCCACTCTCCCTTACCTTTTTACAAATAAATTTAAAT-------------
i rheMac8.chr7              I 5 C 0
s macFas5.chr7              61611844 86 + 171882078 AATGCTAAAGGATGCGAGAGTGAACATCAGGGAAAGA----------TCCACTCTCCC-TAATTTTCTACAAATAAATTTAAACTGTAAATTAGAAA
i macFas5.chr7              I 5 C 0
s cerAty1.NW_011999477v1     9801520 87 +  10730278 AATGCTAAAGGATGCCAGAGTGAACATCAGGGAAAGA----------CCCACTCTCCCTTAACTTTTCAGAAAGAAATTTAAACTGTAAATTAGAAA
i cerAty1.NW_011999477v1    I 4 C 0
s chlSab2.chr29              1339516 63 +  24206276 AATGCTAAAGGATGCGAGAGTGAACATCAGGGAAAGA----------TCCACTCTCCC-TAACTTTCTACAAAT-----------------------
i chlSab2.chr29             I 5 C 0
s manLeu1.NW_012102632v1     3941274 64 +   4030761 AATGCTAAAGGATGCCAGAGTGAACATCAGGGAAAGA----------CCCACTCTCCCTTAACTTTTCAGAAAG-----------------------
i manLeu1.NW_012102632v1    I 5 C 0
s colAng1.NW_012114844v1     4050873 87 +   5013933 AATGCTAAAGGATGCCAGAGTGAACATCAGGAAAAGA----------CCCACTCTCCCTTAACTTTTCACAAAGAAATTTAAACTGTAAATTAGAAA
i colAng1.NW_012114844v1    I 4 I 3
s cebCap1.NW_016107979v1       15725 91 -   1024465 AACGCTAAAGGATGCCAGAGAGAACATCAGTGAAAGACACACGAAGGCCCACTCTCCTTTAACTTTTTACAAAT------AAACTATAAATTAGAAA
i cebCap1.NW_016107979v1    C 0 C 0
e macNem1.NW_012011533v1     3939740 28 +   4820037 I

a score=4918.000000
s hg38.chr15_KI270850v1_alt    52612 7 +    430880 cacaaat
s panPan2.chr15             23086782 7 -  99763055 CACAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      343902 6 -    378907 cacaaa-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22728047 6 - 121039945 CACAAA-
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              61611930 5 + 171882078 CACAA--
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1     9801607 7 +  10730278 CATAAAT
i cerAty1.NW_011999477v1    C 0 C 0
s cebCap1.NW_016107979v1       15816 7 -   1024465 CACAAAT
i cebCap1.NW_016107979v1    C 0 I 73
e colAng1.NW_012114844v1     4050960 3 +   5013933 I
e manLeu1.NW_012102632v1     3941338 0 +   4030761 C
e chlSab2.chr29              1339579 0 +  24206276 C
e macNem1.NW_012011533v1     3939740 28 +   4820037 I
e rheMac8.chr7              60016709 0 + 169600520 C

a score=819.000000
s hg38.chr15_KI270850v1_alt    52619 3 +    430880 aaa
s panPan2.chr15             23086789 3 -  99763055 AAA
i panPan2.chr15             C 0 I 6
s cerAty1.NW_011999477v1     9801614 3 +  10730278 AAA
i cerAty1.NW_011999477v1    C 0 I 71251
e cebCap1.NW_016107979v1       15823 73 -   1024465 I
e colAng1.NW_012114844v1     4050960 3 +   5013933 I
e manLeu1.NW_012102632v1     3941338 0 +   4030761 C
e chlSab2.chr29              1339579 0 +  24206276 C
e macNem1.NW_012011533v1     3939740 28 +   4820037 I
e macFas5.chr7              61611935 0 + 171882078 C
e rheMac8.chr7              60016709 0 + 169600520 C
e nomLeu3.chr6              22728053 0 - 121039945 C
e gorGor5.CYUI01015946v1      343908 0 -    378907 C

a score=4573.000000
s hg38.chr15_KI270850v1_alt    52622 51 +    430880 tttaaactataaattagaaacacaaataaatttaaattataaattagaaac
s gorGor5.CYUI01015946v1      343908 51 -    378907 tttaaactataaattagaaacacaaataaatttaaactataaattagaaac
i gorGor5.CYUI01015946v1    C 0 C 0
e cebCap1.NW_016107979v1       15823 73 -   1024465 I
e panPan2.chr15             23086792  6 -  99763055 I
e colAng1.NW_012114844v1     4050960  3 +   5013933 I
e manLeu1.NW_012102632v1     3941338  0 +   4030761 C
e chlSab2.chr29              1339579  0 +  24206276 C
e cerAty1.NW_011999477v1     9801617 71251 +  10730278 I
e macNem1.NW_012011533v1     3939740 28 +   4820037 I
e macFas5.chr7              61611935  0 + 171882078 C
e rheMac8.chr7              60016709  0 + 169600520 C
e nomLeu3.chr6              22728053  0 - 121039945 C

a score=19991.000000
s hg38.chr15_KI270850v1_alt    52673 28 +    430880 acaaatttaaactataaattAGAAACAC
s gorGor5.CYUI01015946v1      343959  2 -    378907 ac--------------------------
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              60016709 14 + 169600520 --------------TAAATTAGAAACAC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1     3939768 28 +   4820037 ACAAATTTAAACTGTAAATTAGAAACAT
i macNem1.NW_012011533v1    I 28 C 0
s cerAty1.NW_011999477v1     9872868 28 +  10730278 ACAAATTTAAACTGTAAATTAGAAACAT
i cerAty1.NW_011999477v1    I 71251 C 0
s chlSab2.chr29              1339579 26 +  24206276 --AAATTTAAACTGTAAATTAGAAACAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3941338 26 +   4030761 --AAATTTAAACTGTAAATTAGAAACAT
i manLeu1.NW_012102632v1    C 0 C 0
e cebCap1.NW_016107979v1       15823 73 -   1024465 I
e panPan2.chr15             23086792  6 -  99763055 I
e colAng1.NW_012114844v1     4050960  3 +   5013933 I
e macFas5.chr7              61611935  0 + 171882078 C
e nomLeu3.chr6              22728053  0 - 121039945 C

a score=38732.000000
s hg38.chr15_KI270850v1_alt    52701 13 +    430880 AAATAAACATAAG
s gorGor5.CYUI01015946v1      343961  9 -    378907 ----aaacataaG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22728053  9 - 121039945 ----AAATATGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60016723 13 + 169600520 AAATAAACATGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61611935 11 + 171882078 --ATGAACATGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1     3939796 13 +   4820037 AAATAAACATGAG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1     9872896 13 +  10730278 AAATAAACATGAG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              1339605 13 +  24206276 AAATAAACATGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3941364 13 +   4030761 AAATAAACATGAG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1     4050963 13 +   5013933 AAACAAACATGAG
i colAng1.NW_012114844v1    I 3 C 0
e cebCap1.NW_016107979v1       15823 73 -   1024465 I
e panPan2.chr15             23086792  6 -  99763055 I

a score=170532.000000
s hg38.chr15_KI270850v1_alt    52714 39 +    430880 TGGCTCTAACATTCAAATGAAGTAAATGAATTGTGTAGG
s panPan2.chr15             23086798 39 -  99763055 TGGCTCTAACATTCAAATGGAGTAAATGAATTGTGTAGG
i panPan2.chr15             I 6 C 0
s gorGor5.CYUI01015946v1      343970 39 -    378907 TGGCTCTAACATTCAAATGAAGTAAATGAATTGTGTAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22728062 39 - 121039945 TGGCTCTAACATTCAAACGGAGTAAAAGAATTGTGTGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60016736 39 + 169600520 TGGCTCTAACATTCAAATGAAGTAAATGAATTGTGTAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61611946 39 + 171882078 TGGCTCTAACATTCAGATGAAGTAAATGAATCGTGTACG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1     3939809 39 +   4820037 GGGCTCTAACATTCCAATGAAGTAGATGAATTGTGTAGG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1     9872909 39 +  10730278 GGGCTCTAACATTCCAATGAAGTAGATGAATTGTGTAGG
i cerAty1.NW_011999477v1    C 0 I 6
s chlSab2.chr29              1339618 39 +  24206276 TGGCTCTAACATTCAGATGAAGTAAATGAATTGTGTACT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3941377 39 +   4030761 GGGCTCTAACATTCCAATGAAGTAGATGAATTGTGTAGG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1     4050976 39 +   5013933 GGGCTCTAACATTCCAATGAAGTAGATGAATTGTGTAGG
i colAng1.NW_012114844v1    C 0 C 0
e cebCap1.NW_016107979v1       15823 73 -   1024465 I

a score=33137.000000
s hg38.chr15_KI270850v1_alt    52753 24 +    430880 ATATTAACCCCTTAAATGtttt------------------gt
s panPan2.chr15             23086837 23 -  99763055 AGATGAACCCCGTAACt-tttt------------------gt
i panPan2.chr15             C 0 I 2
s gorGor5.CYUI01015946v1      344009 24 -    378907 ATATTAACCCCTTAAACGTTTT------------------GT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22728101 23 - 121039945 AGATTAACCCCATCACT-TTTT------------------GT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60016775 41 + 169600520 AAACTAACCCCAAAGTT-TTCTTttttgtttttttgttttgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61611985 23 + 171882078 AGATTAACGCCATAACT-TTTT------------------GT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1     3939848 21 +   4820037 GGATTAACCCCATAATT-TTTT--------------------
i macNem1.NW_012011533v1    C 0 C 0
s chlSab2.chr29              1339657 23 +  24206276 AGATTAACGCCATAACT-TTTT------------------GT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3941416 19 +   4030761 GGATTAACCCCATAA-----TT------------------GT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1     4051015 22 +   5013933 GGATTAACCCCATAACT-TTTT------------------G-
i colAng1.NW_012114844v1    C 0 C 0
e cebCap1.NW_016107979v1       15823 73 -   1024465 I
e cerAty1.NW_011999477v1     9872948  6 +  10730278 I

a score=21325.000000
s hg38.chr15_KI270850v1_alt    52777 14 +    430880 tttttttttttttC
s panPan2.chr15             23086862 14 -  99763055 ttgttgttgttTTA
i panPan2.chr15             I 2 C 0
s gorGor5.CYUI01015946v1      344033 11 -    378907 ---TTGTTTTTTTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22728124 11 - 121039945 ---TGTTGTTTTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60016816 14 + 169600520 tttgttttgttttC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61612008 14 + 171882078 TGTTGTTGTTTTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1     3939869  9 +   4820037 -----TTTTTTTTT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1     9872954 14 +  10730278 TTTTTTTTTTTTAA
i cerAty1.NW_011999477v1    I 6 C 0
s chlSab2.chr29              1339680 14 +  24206276 TGTTGTTGTTTTTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3941435 14 +   4030761 TTTTTTTTTTTTTT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1     4051037 12 +   5013933 --CTGTTGTTTTTA
i colAng1.NW_012114844v1    C 0 C 0
e cebCap1.NW_016107979v1       15823 73 -   1024465 I

a score=290897.000000
s hg38.chr15_KI270850v1_alt    52791 59 +    430880 AATTTCTTGACCCGCTCTTAGATGATGGTGATGTTTAGCTCCCTGTTCTCCGCAGCCCG
s panPan2.chr15             23086876 59 -  99763055 AATTTCTTGACCAGCTCTTAGATGATGATGATGTTTATCTCCCTGTTCTTGGCTGCCCG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      344044 58 -    378907 AATTTCTTGAGCAGCTCTTAGATGATGGTGATGTTTATCTCCCTG-TCTCGGCAGCCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22728135 59 - 121039945 AATTTCTTGACCAGCTCTTAGATGATGATGATGTTTATCTCCCTGTTCTTGGCTGCTCG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60016830 56 + 169600520 AATTTCTCGTCCAGGTCTTA---GATGATGATGTTTATCTCCCTGTTCTCAGTTGCCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61612022 59 + 171882078 AATTTCTTGACCAGCTCTTAGATGATGATGATGTTTATCTCCCTGTTCTCGGATGCCCG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1     3939878 59 +   4820037 AATTTCTTGACCAGCTCTTAGATGATGATGATGTTTATCTCCCTGTTCTCGGCTGCCCG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1     9872968 59 +  10730278 AACTTCTTGACCAGCTCTCAGATGATGATGATGTTTATCTCTCTGTTCTTGGCTGCCCG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              1339694 59 +  24206276 AATTTCTTGACCAGCTCTTAGATGATGATGATGTTTATCTCCCTGTTCTCGGATGCCCG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3941449 59 +   4030761 AATTTCTTGACCAGCTCTTAGATGATGATGATTTTTATCTCTCTGTTCTCAGCTGCCCG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1     4051049 59 +   5013933 AATTTCTTGACCAACTCTCAGATGATGATGATGTTTATCTCTCTGTTCTCGGCTGCCCG
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1       15896 59 -   1024465 AATTTCTTGGCCAGCTCTTAGCTGATGGTGATGTTTACCTCCTCCTTCGCCGCAGCCCG
i cebCap1.NW_016107979v1    I 73 I 181

a score=89674.000000
s hg38.chr15_KI270850v1_alt    52850 17 +    430880 --AAAAGAATGGCATGCAG
s panPan2.chr15             23086935 19 -  99763055 GTAAAAGAATGGTATGCAG
i panPan2.chr15             C 0 I 11
s gorGor5.CYUI01015946v1      344102 17 -    378907 --AAAAGAATGGCATGCAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22728194 19 - 121039945 GTAAAAGAATGGCATGCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60016886 19 + 169600520 GTAAAAGAATGGCATGCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61612081 19 + 171882078 GTAAAAGAATGGCATGCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1     3939937 19 +   4820037 GTAAAAGAATGGCACGCAG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1     9873027 19 +  10730278 GTAAAAGAATGGCACGCAG
i cerAty1.NW_011999477v1    C 0 I 11
s chlSab2.chr29              1339753 19 +  24206276 GTAAAAGAATGGCATGCAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3941508 19 +   4030761 GTAAAAGAATGGCACGCAG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1     4051108 19 +   5013933 GTAAAAGAATGGCACGCAG
i colAng1.NW_012114844v1    C 0 I 11
e cebCap1.NW_016107979v1       15955 181 -   1024465 I

a score=11872.000000
s hg38.chr15_KI270850v1_alt    52867 9 +    430880 CCTCTTCTG
s gorGor5.CYUI01015946v1      344119 9 -    378907 CCTCTCCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22728213 9 - 121039945 GGTTTGCTG
i nomLeu3.chr6              C 0 I 2
s rheMac8.chr7              60016905 9 + 169600520 GGTTTGCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61612100 9 + 171882078 GGTTTGGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1     3939956 9 +   4820037 GGTTTGCTG
i macNem1.NW_012011533v1    C 0 C 0
s chlSab2.chr29              1339772 9 +  24206276 GGTTTGGTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3941527 9 +   4030761 GGTTTGCTG
i manLeu1.NW_012102632v1    C 0 I 3
e cebCap1.NW_016107979v1       15955 181 -   1024465 I
e panPan2.chr15             23086954 11 -  99763055 I
e colAng1.NW_012114844v1     4051127 11 +   5013933 I
e cerAty1.NW_011999477v1     9873046 11 +  10730278 I

a score=-5917.000000
s hg38.chr15_KI270850v1_alt    52876 40 +    430880 CTCCTCCTGCCGCCTCTCCTGTACCAACAGCTTCTCCACT
s gorGor5.CYUI01015946v1      344128 40 -    378907 CTCCTCCTGCTGCCTCTCCTGTACCAACAGCTTCTCCACC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              60016914  2 + 169600520 -----------------------------GC---------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61612109  2 + 171882078 -----------------------------GC---------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1     3939965  2 +   4820037 -----------------------------GC---------
i macNem1.NW_012011533v1    C 0 C 0
s chlSab2.chr29              1339781  2 +  24206276 -----------------------------GC---------
i chlSab2.chr29             C 0 C 0
e cebCap1.NW_016107979v1       15955 181 -   1024465 I
e panPan2.chr15             23086954 11 -  99763055 I
e colAng1.NW_012114844v1     4051127 11 +   5013933 I
e manLeu1.NW_012102632v1     3941536  3 +   4030761 I
e cerAty1.NW_011999477v1     9873046 11 +  10730278 I
e nomLeu3.chr6              22728222  2 - 121039945 I

a score=4500.000000
s hg38.chr15_KI270850v1_alt    52916 1 +    430880 C
s panPan2.chr15             23086965 1 -  99763055 C
i panPan2.chr15             I 11 C 0
s gorGor5.CYUI01015946v1      344168 1 -    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22728224 1 - 121039945 C
i nomLeu3.chr6              I 2 C 0
s rheMac8.chr7              60016916 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61612111 1 + 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1     3939967 1 +   4820037 C
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1     9873057 1 +  10730278 C
i cerAty1.NW_011999477v1    I 11 C 0
s chlSab2.chr29              1339783 1 +  24206276 C
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012114844v1     4051138 1 +   5013933 C
i colAng1.NW_012114844v1    I 11 C 0
e cebCap1.NW_016107979v1       15955 181 -   1024465 I
e manLeu1.NW_012102632v1     3941536 3 +   4030761 I

a score=667186.000000
s hg38.chr15_KI270850v1_alt    52917 162 +    430880 AAGCCTGGGTGCTCCTGGGGAGTCCTGCATTAGAGGAAGCAGCTGCTGGATCTGCTGTGCAGTGGGGTTGTCATGGGGGAGAACCCTCCCTGTCCTCTCCCGGTGCAGCCTCCATGCTATCAGTGAGGCTCAGCTCACTAAGATCTTCAGAGAGAGGGAGGG
s panPan2.chr15             23086966 160 -  99763055 AAGCCTGGGTGCTCCTGGGT-GTCCTGCATTACAGGAGGTAGCTGCATGATCTGCTGTGCAGTGGGGTTGTCATGGGG-AGAACCCTCTCTGGCCGCTGCTGGTGCACGCTCCACGCTGTCGTCCAGGCTTATCTCATAAAAATCTTCGGAGAGAGGGAGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      344169 162 -    378907 AAGCCTGGGTGCTCCTGGGGAGTCCTGCATTAGAGGAAGCAGCTGCTGGATCTGCTGTGCAGTGGGGTTGTCATGGGGGAGAACCCTCCCTGTCCTCTCCCGGTGCAGCCCCCATGCTATCAGTGAGGCTCAGCTCACTAAGATCTTCAGAGAGAGAGAGGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22728225 160 - 121039945 AAGCCTGGGTGCTCCTGGGT-GTCCTGCATTACAGGAAGCAGCTGCGTGATCTTCTGTGCAGTGGGGTTGTCATGGGG-AGAACCCTCCCTGGCCGCTCCTGGTGCAGGCTCCATGCTGTTGTCCAGGCTCACCTCATAAAAATCTTCAGAGAGAGGGAGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60016917 160 + 169600520 AAGCCTGAGTGCTCCTGGGT-GTCCTGCATTACAGGAAGCAGGTGCACGATCTGCTGTGCAGTGGGGTTGTCATGGGG-AGAACCCTCCCTGGCCTCTCCTGATGCAGGCTCCATGCTGTCGTCCAGGCTCACCTCACAAAAATCTTCGGAGAGAGGGAGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61612112 160 + 171882078 AAGCCTGGGTGCTCCTGGGT-GTCCTGCATTACAGGAAGCAGGTGCACGATCTGCTCTGCAGTGGGGTTGTCATGGGG-AGAACCCTTCCTGGCCTCTCCTGGTGTGGGCTCCACGCTGTTGTCCAGGCTCACCTCAGAAAAATCTTCAGAGAGAGGGAGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1     3939968 160 +   4820037 AAGCCTGGGTGCTCCTGGGT-GTCCTGCGTTACAGGAAGCAGCTGCAGGATCTTCTGTGCAGTGGGGTTGTCATGGGG-AGAACCCTCCCTGTCCTCTCCTGGTGTAGGCTCCACGCTGTCGGCCAGGCTCACCTCATAGAAATCTTCGGAGAGAGGGAGGC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1     9873058 145 +  10730278 AAGCCTGGGTGCTCCTGGGT-GTCCTGCACTACAGGAAGCAGCTGCAGGATCTTCTGTGCAGTGGGATTGTCACAGGG-AGTACCCTCCCTGGCCTGTCCCGGTGCAGGCTCCACGCTG---------------TCCTGAAAATCTTCGGAGAGAGGGAGGT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              1339784 160 +  24206276 AAGCCTGGGTGCTCCTGGGT-GTCCTGCATTACAGGAAGCAGGTACATGATCTGCTCTGCAGTGGGGTTGTCATGGGG-AGAACCCTTCCTGGCCTCTCCTGGTGTGGGCTCCACGCTGTTGTCCAGGCTCACCTCACAAAAATCTTCAGAGAGAGGGAGGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3941539 160 +   4030761 AAGCCTGGGTGCTCCTGGGT-GTCCTGCATTACAGGAAGCAGCTGTACAATCTTCTGTGCAGTGGGGTTGTCATGGGG-AGAACCCTCCCTGGCCTCTCCTGGTGCAGGCTCCATGCTGTTGGCCAGGCTCACCTCATAAAAATCTTCGGAGAGAGGGAGGC
i manLeu1.NW_012102632v1    I 3 C 0
s colAng1.NW_012114844v1     4051139 160 +   5013933 AAGCCTGGGTGCTCCTGGGT-GTCCTGCATTACAGGAAGCAGCTGCAGGATCTTCTGTGCAGTGGGGTTGTCACGGGG-AGAACCCTTCCTGGCCTCTCCTGGTGCAGGCTCCACGCTGTCGGCCAGGCTCATCTCATAAAAATCTTCAGAGAGAGGGAGGC
i colAng1.NW_012114844v1    C 0 C 0
e cebCap1.NW_016107979v1       15955 181 -   1024465 I

a score=-32823.000000
s hg38.chr15_KI270850v1_alt    53079 5 +    430880 ---GG------T-GG
s panPan2.chr15             23087126 5 -  99763055 ---GG------G-GG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      344331 6 -    378907 ---GG------GTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22728385 5 - 121039945 ---GG------G-GG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60017077 2 + 169600520 ---GG----------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61612272 2 + 171882078 ---AG----------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1     3940128 2 +   4820037 ---AG----------
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1     9873203 1 +  10730278 ----G----------
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              1339944 2 +  24206276 ---AG----------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3941699 5 +   4030761 ---GGGGG-------
i manLeu1.NW_012102632v1    C 0 I 4023
s colAng1.NW_012114844v1     4051299 5 +   5013933 ---GG---GGG----
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1       16136 5 -   1024465 GGTGG----------
i cebCap1.NW_016107979v1    I 181 C 0

a score=5112.000000
s hg38.chr15_KI270850v1_alt    53084 3 +    430880 GAA
s gorGor5.CYUI01015946v1      344337 3 -    378907 GAA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              60017079 3 + 169600520 GGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61612274 3 + 171882078 GGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1     3940130 3 +   4820037 GGG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1     9873204 3 +  10730278 GGG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              1339946 3 +  24206276 GGA
i chlSab2.chr29             C 0 C 0
s cebCap1.NW_016107979v1       16141 3 -   1024465 GGA
i cebCap1.NW_016107979v1    C 0 C 0
e panPan2.chr15             23087131 0 -  99763055 C
e colAng1.NW_012114844v1     4051304 0 +   5013933 C
e manLeu1.NW_012102632v1     3941704 4023 +   4030761 I
e nomLeu3.chr6              22728390 0 - 121039945 C

a score=368398.000000
s hg38.chr15_KI270850v1_alt    53087 69 +    430880 TCTGGGCACAGTGCGAGCCTCCCCTGCTCCTGCCTGCCCACCCCGCCTGAGGGCTCTACTCACCACCCT
s panPan2.chr15             23087131 68 -  99763055 TCTGAGCACAGTGCTAGCCTCCCCTGCTCCTGCCTGCCCACCCCGCCCG-GGGCTCTACTCACCATCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      344340 69 -    378907 TCTGAGCACAGTGCGAGCCTCCCCTGGTCCTGCCTGCCCACCCCGCCTGAGGGCTCTACTCACCACCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22728390 69 - 121039945 TCTGAGCACAGTGCCAGCCTCCCCTGCTCCTGCCTGCCCACCCCACCTGAGGGCTCTACTCAGCACTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60017082 69 + 169600520 TCTCAGTGCAGGGCTAGCCTCCCCTGCTCCTGCCTGCCCACCCTACCTGAGGGCTCTACTCACCACCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61612277 69 + 171882078 TCTCAGTGCAGGGCCAGCCTCCCCTGCTCCTGCCTGCCCACCCCACCTGAGGGCTCTACTCACCACCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1     3940133 69 +   4820037 TCTGAGCACAGTGCGAGCCTCCCCTGCCCCTGCCTGTCCACCCCGCCTGAGGGCTCTACTCACCACCCT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1     9873207 69 +  10730278 TCTGAGTACACTGCGAGCCTCCCCTGCTCCAGCCTGCCCACCCCGCCTGAGGGCTCTACTCACCACCCT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              1339949 69 +  24206276 TCTCAGTGCAGGGCCAGCCTCCCCTGCTCCTGCCTGCCCACCCCACCTGAGGGCTCTACTCACCACCCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3945727 69 +   4030761 TCTGAGCACAGTGTGAGCCTCCCCTGCCCCTGCCTGTCCACCCCGCCTGAGGGCTCTACTCACCACCCT
i manLeu1.NW_012102632v1    I 4023 C 0
s colAng1.NW_012114844v1     4051304 69 +   5013933 TCTGAGCACAGTGCGAGCCTCCCCTGTCCCTACCTGTCCACCCCGCCTGAGGGCTTTATTCACCACTCT
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1       16144 69 -   1024465 TCTGAGTCCAGTGCCAGCCTCCCCTGCTCCTGCCTGCCCACCCCACCTGAGGGCTCTACTCACCATCCT
i cebCap1.NW_016107979v1    C 0 I 1022

a score=16005.000000
s hg38.chr15_KI270850v1_alt    53156 3 +    430880 GCT
s panPan2.chr15             23087199 3 -  99763055 GCT
i panPan2.chr15             C 0 I 1715
s gorGor5.CYUI01015946v1      344409 3 -    378907 GCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22728459 3 - 121039945 GCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60017151 3 + 169600520 GCT
i rheMac8.chr7              C 0 I 1938
s macFas5.chr7              61612346 3 + 171882078 GCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1     3940202 3 +   4820037 GCT
i macNem1.NW_012011533v1    C 0 I 1946
s cerAty1.NW_011999477v1     9873276 3 +  10730278 GCT
i cerAty1.NW_011999477v1    C 0 I 1949
s chlSab2.chr29              1340018 3 +  24206276 GCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3945796 3 +   4030761 GCT
i manLeu1.NW_012102632v1    C 0 I 1946
s colAng1.NW_012114844v1     4051373 3 +   5013933 GCT
i colAng1.NW_012114844v1    C 0 I 1926
e cebCap1.NW_016107979v1       16213 1022 -   1024465 I

a score=898.000000
s hg38.chr15_KI270850v1_alt    53159 2 +    430880 TG
s gorGor5.CYUI01015946v1      344412 2 -    378907 TG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22728462 2 - 121039945 CA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              61612349 2 + 171882078 TG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              1340021 2 +  24206276 TG
i chlSab2.chr29             C 0 I 1932
e cebCap1.NW_016107979v1       16213 1022 -   1024465 I
e panPan2.chr15             23087202 1715 -  99763055 I
e colAng1.NW_012114844v1     4051376 1926 +   5013933 I
e manLeu1.NW_012102632v1     3945799 1946 +   4030761 I
e cerAty1.NW_011999477v1     9873279 1949 +  10730278 I
e macNem1.NW_012011533v1     3940205 1946 +   4820037 I
e rheMac8.chr7              60017154 1938 + 169600520 I

a score=10674.000000
s hg38.chr15_KI270850v1_alt    53161 34 +    430880 TCCGCACATCCAAGCTCCTTGTGGGACTGGGGCT
s gorGor5.CYUI01015946v1      344414 33 -    378907 TCCGCACACCCAAGCTCC-TGTGGGACTGGGGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22728464 33 - 121039945 TTGGCAGCCCCAAGTTCC-TGGGGGGCTGGGGCC
i nomLeu3.chr6              C 0 I 1896
s macFas5.chr7              61612351 33 + 171882078 CCAGCAGCCCCAAGTTCC-TCGGGGGCTGGAGCC
i macFas5.chr7              C 0 C 0
e cebCap1.NW_016107979v1       16213 1022 -   1024465 I
e panPan2.chr15             23087202 1715 -  99763055 I
e colAng1.NW_012114844v1     4051376 1926 +   5013933 I
e manLeu1.NW_012102632v1     3945799 1946 +   4030761 I
e chlSab2.chr29              1340023 1932 +  24206276 I
e cerAty1.NW_011999477v1     9873279 1949 +  10730278 I
e macNem1.NW_012011533v1     3940205 1946 +   4820037 I
e rheMac8.chr7              60017154 1938 + 169600520 I

a score=1000.000000
s hg38.chr15_KI270850v1_alt    53195 1 +    430880 C
s panPan2.chr15             23088917 1 -  99763055 C
i panPan2.chr15             I 1715 C 0
s nomLeu3.chr6              22730393 1 - 121039945 C
i nomLeu3.chr6              I 1896 C 0
s rheMac8.chr7              60019092 1 + 169600520 C
i rheMac8.chr7              I 1938 C 0
s macFas5.chr7              61612384 1 + 171882078 C
i macFas5.chr7              C 0 I 1898
e cebCap1.NW_016107979v1       16213 1022 -   1024465 I
e colAng1.NW_012114844v1     4051376 1926 +   5013933 I
e manLeu1.NW_012102632v1     3945799 1946 +   4030761 I
e chlSab2.chr29              1340023 1932 +  24206276 I
e cerAty1.NW_011999477v1     9873279 1949 +  10730278 I
e macNem1.NW_012011533v1     3940205 1946 +   4820037 I
e gorGor5.CYUI01015946v1      344447 0 -    378907 C

a score=23106.000000
s hg38.chr15_KI270850v1_alt    53196 14 +    430880 CAGGTACTGGTCTG
s panPan2.chr15             23088918 14 -  99763055 CAGGTACTAGTCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      344447 14 -    378907 CAGGTACTGGTCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22730394 14 - 121039945 CAGGTACTGGTCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60019093 14 + 169600520 CAGGTACTAGTCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61614283 14 + 171882078 CAGGTTCTAGTCTC
i macFas5.chr7              I 1898 C 0
s chlSab2.chr29              1341955 14 +  24206276 CAGGTACTAGTCTC
i chlSab2.chr29             I 1932 C 0
e cebCap1.NW_016107979v1       16213 1022 -   1024465 I
e colAng1.NW_012114844v1     4051376 1926 +   5013933 I
e manLeu1.NW_012102632v1     3945799 1946 +   4030761 I
e cerAty1.NW_011999477v1     9873279 1949 +  10730278 I
e macNem1.NW_012011533v1     3940205 1946 +   4820037 I

a score=593653.000000
s hg38.chr15_KI270850v1_alt    53210 134 +    430880 GCTGCTGCTGCAGACTCGGAGCCTCTTGGCTCTTCAGCTCCACCTGCCGGAAGACCCTGGGCATGAGGACATGTGGTGGCTGGCTTCCAGATTCCTGGCCCATTAATAGGGTAGCGAGGGCACTGTGGGGCTCT
s panPan2.chr15             23088932 134 -  99763055 ACTGCTGCTGCAGACTCTGAGACTCTTGGCTCTTCAGCTCCACCTGCAGGAAAACCCTGGGCATGAGGGCACATGGTGGCTGGCTTCCAGATTCTGGGCCCATTAATAGGGTAGCTAGGGCACTGTGGGGCTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      344461 134 -    378907 GCTGCTGCTGCAGACTCGGAGCCTCTTGGCTCGTCAGCTCCACCTGCCGGAAGACCCTGGGCATGAGGACATGTGGTGGCTGGCTTCCAGATTCCTGGCCCATTAATAGGGTAGCCAGGGCACTGTGGGGCTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22730408 134 - 121039945 ACTGCTGCTGCAGACTCTGAGACTCTTGGCTCTTCAGCTCCACCTGCAGGAAGGCCCTGGGCATGAGGGCACATGGTGGCTGGCTTCCAGATTCTGGGCCCATTAATAGGGTAGCCAGGGCACTGTGGGGCTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60019107 134 + 169600520 ACTGCTGCTGCAGACTCTGAGACTCTTGGGTCTTCAGCTGTATCTGCAGGAAGACCCTGGGAATGAGGGCATGTGGTGGTTGGCTTCCAGATTCTGGGTCCATTAATAGGGTAGCGAGGGCACTGTGGGGCTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              61614297 134 + 171882078 ACTTCTGCTGCAGACTCTGAGACTCTTGGCTCTTCAGCTCCACCTGCAGGAAGACCCTGGGCATGAGGGCACGTGGTGGCTGGCTTCCAGATTCTGGGCCCATTAATAGGGTAGCAAGGGAACTGTGGGGCTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1     3942151 134 +   4820037 GCTGCTGCTGCAGATTGTGAGATTCTTGGCTCTTCAGCTCCACCTGCAGGAAGACCCTGGGCATGAGGGCATGTGGTGGTTGGCTTCCAGATTCTGGGCCCATTAATAGGGTAGCAAGGGCACAGTGGGGCTCT
i macNem1.NW_012011533v1    I 1946 C 0
s cerAty1.NW_011999477v1     9875228 131 +  10730278 GCTGCTGCTGCAGACTCTGAGACTCTTGGCTCTTCAGCTGTATCTGCAGGAAGACCCTGGGCATGAGGGCATGTGGT---TGGCTTCCAGATTCTGGGCCCATTAATAGGGCAGTGAGGGCACGGTGGGGCTCT
i cerAty1.NW_011999477v1    I 1949 C 0
s chlSab2.chr29              1341969 134 +  24206276 ACTTCTGCTGCAGACTCTGAGACTCTTGGCTCTTCAGCTTCACCTGCAGGAAGACCCTGGGCATGAGGGCACGTGGTGGCTGGCTTCCAGATTCTGGGCCCATTAATAGGGTAGCAAGGGAACTGTGGGGCTCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3947745 131 +   4030761 GCTGCTGCTGCAGACTCTGAGACTCTTGGCTCTTCAGCTGTATCTGCAGGAAGACCCTGGGCATGAGGGCATGTGGT---TGGCTTCCAGATTCTGGGCCCATTAATAAGGTAGTGAGGGCACAGTGGGGCTCT
i manLeu1.NW_012102632v1    I 1946 C 0
s colAng1.NW_012114844v1     4053302 132 +   5013933 GCTGCTGCTGCAGACTCTGAGACACTTGGCTCTTCAGCTGTATCTGCAGGGAGACCCT-GGCATGAGGGCATGTGGTGGTTGGCTT-CAGATTCTGGGCCCATTAATAGGGTAGCAAGGGCACTGTGGGACTCT
i colAng1.NW_012114844v1    I 1926 C 0
e cebCap1.NW_016107979v1       16213 1022 -   1024465 I

a score=45450.000000
s hg38.chr15_KI270850v1_alt    53344 11 +    430880 GTGGCCTGCCC
s panPan2.chr15             23089066 11 -  99763055 GTCACCTGCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      344595 11 -    378907 GTGGCCTGCCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22730542  6 - 121039945 GTCACC-----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60019241 11 + 169600520 GTCACCTGCCC
i rheMac8.chr7              C 0 I 4
s macFas5.chr7              61614431 11 + 171882078 GTCACCTGCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1     3942285 11 +   4820037 GTTACCTGCCC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1     9875359 11 +  10730278 GTCACCTGCCC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              1342103 11 +  24206276 GTCACCTGCCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1     3947876 11 +   4030761 GTCACCTGCCC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1     4053434 11 +   5013933 GTCACCTGCTG
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1       17235 11 -   1024465 GTGGCCTGCCC
i cebCap1.NW_016107979v1    I 1022 C 0

a score=77200.000000
s hg38.chr15_KI270850v1_alt    53355 20 +    430880 AGGCCCCTGGCCCCTTGCTC
s panPan2.chr15             23089077 20 -  99763055 AGGACCCTGGTCCCTTGCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      344606 20 -    378907 AGGCCCCTGGCCCCTTGCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              22730548  5 - 121039945 ---------------TGCTC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              61614442 20 + 171882078 AGGCCCCTGGCCCCTTGCTC
i macFas5.chr7              C 0 N 0
s macNem1.NW_012011533v1     3942296 20 +   4820037 AGGCCCCTGGCCCCTTGCTC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1     9875370 20 +  10730278 AGGCCCCTGGCCCCTTGTTC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              1342114 20 +  24206276 AGGCCCCTGGCCCCTTGCTC
i chlSab2.chr29             C 0 N 0
s manLeu1.NW_012102632v1     3947887 20 +   4030761 AGGCCCCTGGCCCCTTGCTC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1     4053445 20 +   5013933 GGGACCCTGGCCCCTTGCTC
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1       17246 20 -   1024465 AGGCGCCTGGCCCCTGGCTC
i cebCap1.NW_016107979v1    C 0 C 0
e rheMac8.chr7              60019252  4 + 169600520 I

a score=121851.000000
s hg38.chr15_KI270850v1_alt     53375 28 +    430880 CAGGCCTAAGAGACTGTCTCCCTTGCCT
s panPan2.chr15              23089097 28 -  99763055 CAGGCCTAACAGACTTCCTCCCTTGCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       344626 28 -    378907 CAGGCCTAAGAGACTGCCTCCCTTGCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22730553 28 - 121039945 CAGGCCTAAGAGACTTCCTCCCTTGCCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106458542 28 - 171882078 caggcctaagtgactgcCTCCCTTGCCT
i macFas5.chr7              N 0 C 0
s macNem1.NW_012011533v1      3942316 28 +   4820037 CAGGCCTAAGAGACTTCCTCCCTTGCCT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9875390 28 +  10730278 CAGGCCTAAGAGACTTCCCACTTTGCCT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              20302015 28 -  24206276 caggcctaagtgactgcCTCCCTTGCCT
i chlSab2.chr29             N 0 C 0
s manLeu1.NW_012102632v1      3947907 28 +   4030761 CAGGCCTAAGAGACTTCCTCCCTTGCCT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4053465 28 +   5013933 CAGGCCTAGGAGACTTCCCCCCTTGCCT
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1        17266 27 -   1024465 -CAGCCTGAGAGACTGCCTCCCTTGCCT
i cebCap1.NW_016107979v1    C 0 C 0
e rheMac8.chr7               60019252  4 + 169600520 I

a score=1382771.000000
s hg38.chr15_KI270850v1_alt     53403 275 +    430880 AGAACCCCATGCCTCCTTCCCTAGCATCAAATCTCACGTCCTTTTTCCCAGCATGTAAACTGTAGGCCACAGACTGGTGGAAAAGCAGGCGGAGCCAACCaccatctgctaagtgtgctacatgcctaatg-tttccacgtattatctcatttaatcctcagcacctctgcaaggaaaaggctaacttccttttgaagttaaagaaacagagacttagagatgcaaagtagttGAATTATGACCAGTGGAACCGAGGCCGGAATCCAGTTTGAATC
s panPan2.chr15              23089125 276 -  99763055 AGAACCCCATGCCTCCTTCCCCAGCCTCAAATCTCATGTCCTTCTTCCCACCATTTAAACTGTAGGCCACAGACTGGTGGAAAAGCAGAGGGAGCCAACCaccatctgccaagtgtgctacatgcctaatgctttccacgtattctctcattcaatcctcagcacctctgcaaggaaaatgctaacttccttttgaagttacagaaacagagactaagagatgaaaagtagttGAATGGTGACCAGTGGAACCGAGGCCGGAATCCAGTTTGAATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       344654 275 -    378907 AGAACCCCATGCCTCCTTCCCTAGCATCAAATCTCACGTCCTTTTTCCCAGCATTTAAACTGCAGGCCACAGACTGGTGGAAAAGCAGGCGGAGCCAACCaccatctgctaagtgtgctacatgcctaatg-tttccacgtattatctcatttaatcctcagcacctctgcaaggaaaaggctaacttccttttgaagttaaagaaacagagacttagagatgcaaagtAGTTGAATTATGACCAGTGGAACCAAGGCCGGAATCCAGTTTGAATC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22730581 276 - 121039945 AGAACCCCATGCCTCCTTCCCCAGCCTCAAATCTCACATCCTTCTTCCCACCGTTTAAACTGTAGGCCACAGACTGGTGGAAAAGCAGAGGGAGCCaaccaccatctgctaagtgtgctacatgcctaatgctttccatgtattctctcattcaatcctcagcgcctctgcaaggaaaatgctaacttccttttgaagttacagaaacagagactaagagTTGAACAGTAGTTGAATGGTGACCAGTGGAACCGAGGCTGGAATCCAGTTTGAATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60019256 276 + 169600520 AGAACCTCGTGCCTCCTTCCCCAGCCTCAAATCTCATGTCCTTCTTCCCACCATTTAAACTGTAGGCCACAGACTGGTGGAAAAGCAGAGGGAGCCaaccaccatctgctacgtgtgctacatgcctaatgctttccatgtattatctcatttaatcctcagcacctccgtaaggaaaatgctaacttccttttgaagttaaagaaacagagacttagagatgaaaagtagttGAATGGTGACCAGTGGAACCGAGGCCAGAATCCAGTTTGAATC
i rheMac8.chr7              I 4 C 0
s macFas5.chr7              106458570 274 - 171882078 GGAACCCCATGCCTCTTTCCTCAGCCTCAAATCTCACATCC-TCTTCTCACCATTTAAACTGTAGGCCACAGACTGGTGGAAAAGCAGAGGGAGCCAACCACCATCTGCTGAGtgtgctacatgcctaatg-tttccacctattatctcatttaatcctcaaaccctctgcaaggaaaaagctcacttcctttttaagtgaaagaaaccaagacttagagatgcaaggtagttcaatggtgagcagtggagccgaggttggaattcaggtTGAATC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3942344 268 +   4820037 AGAACCACATGTTTCCTTCCCCAGCCTCAAATCTCATGTCCTTCTTCCCACTATTTAAACTGTAGGCCACAGACTGGTGGAAAAGCTGAGGGAGGCaaccaccatctgctaagtgtgctccatgcctaatgctttccatgtgttctctcatttaatccccagcacctccataagaaaaatgctaacttccttttgaagctaaagaaac--------agagatgaaaagtagttgaatgGTGACCAGTGGAATCGAGGTTGGAATCCAGTTTGAATC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9875418 274 +  10730278 AGAACCTCGTGCCTCCTTCCCCAGCCTCAAATCTCCTGTCCTTCTTCCCACCATTTAAACTGTAGGCCACAGACTGGTGGAAAAGCTGAGGGAGCCAAtcaccatctgctaagtgtgctccatgcctaatgctttccatgtgttctctcatttaatccccagcaa--ccataagaaaaatgctaacttccttttgaagtcaaagaaacagagacttagagatgaaaagtagttgaatggtgaccagtggaaccaaggctgggatccagtttgaatc
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              20302043 274 -  24206276 GGAACCCCATGCCTCTTTCCTCAGCCTCAAATCTCACATCC-TCTTCTCACCATTTAAACTGTAGGCCACAGACTGGTGGAAAAGCAGAGGGAGCCAACCACCATCTGCTGAGTGTACTACACACCTAATG-tttccacctattatctcatttaatcctcaaaccctctgcaaggaaaaagctcacttcctttttaagtgaaagaaaccaagacttagagatgcaaggtagttcaatggtgagcagtggagccgaggttggaattcaggtTGAATC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3947935 276 +   4030761 AGAACCACATGTTTCCTTCCCCAGCCTCAAATCTCATGTCCTTCTTCCCACCATTTAAACTGTAGGCCACAGACTGGTAGAAAAGCTGAGGGAGGCAACCaccatctgctaagtgtgctccatgcctaatgctttccatgtgttctctcatttaatccccagcacctccataagaaaaatgctaacttccttttgaagttaaagaaacagagacttagagatgaaaagtagttGAATGGTGACCAGTGGAACCGAGGCCGGAATCCGGTTTGAATC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4053493 273 +   5013933 AGAACCCCATGTCCCCTTTCCCAGCCTCAAATCTCATGTCCTTCTTCCCACCATTTAAACTGTAGACCACAGACTTGTGGAAAAGCAGAAGGAGCCAACCaccatctgctaagcatgctacatgcctaatgctttccatgtgttctctcatttaatcctcagcacctccatgagaaaaa---taacttccttttgaagttaaagaaacagagacttagagatgaaaagtagttGAATGGTGACCAGTGGAACCGAGGTCGGAATCCAGTTTCAATC
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1        17293 275 -   1024465 AGAACCCCATGCCTCCTTCCCCAGCCTCAAATCTCATGTCTGTTCTTCCACCATTTAAACTGTAGGCCACAGAATGG-GGAAAAGCACAGGGAGCCGACCaccatctgccaagtgtgctacatgcctaatgctttccacgcatcatctcatttaatcctcagcacccacgcaaggaaaatgctaacttcctttggaagttaaagaaacagagactgagagatgcaaagtagtcgaatggtgaccagtggaatcaaggctggaatccagTTTGGATC
i cebCap1.NW_016107979v1    C 0 C 0

a score=35601.000000
s hg38.chr15_KI270850v1_alt     53678 8 +    430880 TAAGGAGT
s panPan2.chr15              23089401 8 -  99763055 TAAGGAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       344929 8 -    378907 TAAGGAGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22730857 8 - 121039945 TAAGGAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60019532 8 + 169600520 TAAGGAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106458844 8 - 171882078 TAAGGAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3942612 8 +   4820037 TAAGGAGG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9875692 8 +  10730278 taagGAGG
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3948211 8 +   4030761 TAAGGAGG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4053766 8 +   5013933 TAAGGAGG
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1        17568 8 -   1024465 TAAGGAGA
i cebCap1.NW_016107979v1    C 0 C 0
e chlSab2.chr29              20302317 0 -  24206276 C

a score=510446.000000
s hg38.chr15_KI270850v1_alt     53686 173 +    430880 --------Cttttttgtttt--tctgttttgttttgttttgagagag--tgtcactctgtgtcccaggctgcagtgcagtggtgcaatctcagctcactgcaaccttcatctcccgggctcaagtgattctcgtgtctcagcctcctgagtagctgggattacaggcatgcaccaccaggcccgg
s panPan2.chr15              23089409 170 -  99763055 --------CTTttttgttt-----tgttttgttttgttttgAGACag--tgtcactctgtggcccaggctggagtgcagtggcgcaatctcagctcactgcaacctccacctcccgggctcaagcggttcttgtgcctcagtctcctgagtagctgggattacaggcatgcgccaccatgcctgg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       344937 173 -    378907 --------Cttttttgtttt--tctgttttgttttgttttgagagag--tgtcactctgtgtcccaggctgcagtgcagtggtgcaatctcagctcactgcaaccttcacctcccgggctcaagtgattctcatgtctcagcctcctgagtagctgggattacaggcatgcaccaccaggcccag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22730865 165 - 121039945 --------Cttttt----------tgttttgttttgttttgagacag--tgtcactctgtggcccaggctggagtgcagtggtgcaatctcagctcactgcaacctccacctcccaggctcaagcgattctcatgcctcagcctcctgagtagctgggattataggcatgtgccaccatgcctgg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60019540 167 + 169600520 ----------------Cttt--tttgttttgttttgttttgagacagagtgccactctgtggcccaggctggagtgcagtggtgcaatgccagctcactgtaacctccacctcctggggtcaagcgattctcatgcctcagcctcctgagtagctggcattacaggcatgcaccatcatgcctgg
i rheMac8.chr7              C 0 I 21
s macNem1.NW_012011533v1      3942620 162 +   4820037 -----------------------Cttttttgttttatttggagacagaatgtcaccttgtggcccaggctggagtgcagtggtgcaatctcggctcactgcaacctccacctcccaggctctagcgattctcgtgcctcagcctcctgagtagctgagattacaagcatgcgccaccgtgcctgg
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9875700 160 +  10730278 -----------------------Cttttttctttagttttgagacag--tgtcaccatgtggcccaggctggagtgcagtggtgcaatctcagctcactgtaacctccacctcccaggctcaagcaattctcctgcctcagcctcctgagtagctgacattacaagcatgtgccaccatgcctgg
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3948219 162 +   4030761 -----------------------Cttttttgttttattttgagacagagtgtcaccttgtggcccaggctggagtgcagtggtgtaatctcgactcactgcaacatccacctcccaggctcaagcgattctcgtgcctcagcctcctgagtagctgagattacaagcatgtgccaccatgcctgg
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4053774 162 +   5013933 -----------------------Cttttttcttttgttttgagacagagtgtcaccatgtggcccataccggagtgcagtggtgcaatctcagctcactgcaacctccacctcccaggcttaagagattctcatgcctcagtctcctgagtagctgggattacaggcatgtgccaccatgctggg
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1        17576 183 -   1024465 CTTTCGTTTTGTTTTGCTTTGATTTGAtttcttttgttttgagacagagtgtcactctgtggcccaggctggagagtcctggtgcaaactcagctcaccgcaacctccagctcccgggctcaagggatgctcatgcctcagccccctgagtagctgtgattactgg--tgtgccaccacgcccag
i cebCap1.NW_016107979v1    C 0 C 0
e chlSab2.chr29              20302317   0 -  24206276 C
e macFas5.chr7              106458852   0 - 171882078 C

a score=4188.000000
s hg38.chr15_KI270850v1_alt     53859 2 +    430880 ct
s panPan2.chr15              23089579 2 -  99763055 ct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       345110 2 -    378907 ct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22731030 2 - 121039945 ct
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011533v1      3942782 2 +   4820037 ct
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9875860 2 +  10730278 tt
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3948381 2 +   4030761 ct
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4053936 2 +   5013933 cg
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1        17759 2 -   1024465 ct
i cebCap1.NW_016107979v1    C 0 I 19
e chlSab2.chr29              20302317 0 -  24206276 C
e macFas5.chr7              106458852 0 - 171882078 C
e rheMac8.chr7               60019707 21 + 169600520 I

a score=894.000000
s hg38.chr15_KI270850v1_alt     53861 7 +    430880 aa-ttatt
s panPan2.chr15              23089581 8 -  99763055 aatttttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       345112 7 -    378907 aa-ttatt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22731032 7 - 121039945 aa-ttttt
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011533v1      3942784 5 +   4820037 aa-ttt--
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9875862 5 +  10730278 aa-ttt--
i cerAty1.NW_011999477v1    C 0 I 14
s manLeu1.NW_012102632v1      3948383 5 +   4030761 aa-ttt--
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4053938 5 +   5013933 aa-ttt--
i colAng1.NW_012114844v1    C 0 I 14
e cebCap1.NW_016107979v1        17761 19 -   1024465 I
e chlSab2.chr29              20302317 0 -  24206276 C
e macFas5.chr7              106458852 0 - 171882078 C
e rheMac8.chr7               60019707 21 + 169600520 I

a score=2749.000000
s hg38.chr15_KI270850v1_alt     53868 12 +    430880 attattattttt-
s panPan2.chr15              23089589 11 -  99763055 gttgttg-tctt-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       345119 11 -    378907 attattt-tttt-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22731039 10 - 121039945 -tttttg-tttt-
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011533v1      3942789 12 +   4820037 gttgttg-ttgtt
i macNem1.NW_012011533v1    C 0 C 0
s manLeu1.NW_012102632v1      3948388 12 +   4030761 gttgttg-ttgtt
i manLeu1.NW_012102632v1    C 0 C 0
e cebCap1.NW_016107979v1        17761 19 -   1024465 I
e colAng1.NW_012114844v1      4053943 14 +   5013933 I
e chlSab2.chr29              20302317  0 -  24206276 C
e cerAty1.NW_011999477v1      9875867 14 +  10730278 I
e macFas5.chr7              106458852  0 - 171882078 C
e rheMac8.chr7               60019707 21 + 169600520 I

a score=306762.000000
s hg38.chr15_KI270850v1_alt     53880 126 +    430880 aattttagtagagatgagctttcaccatgttggccatgttggtctcaaactcctga-cctcaagtgattgtcctgcctcagcctcccaaagtgctgggattgcaggcgtgagccaccacacccgacA
s panPan2.chr15              23089600 126 -  99763055 aattttagtagagatgaggttttgccatgttggacaggatggtctcaaaatcttga-cctcaagtgattctcctgcctcagcctcccaaagtgctgggattacaggtgcgagccaccgtgcccCGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       345130 124 -    378907 aattttagtagagatgagctttcaccatgttggccatgttggtctcaaactcctga-cctcaagtgattgtcctgcctcagactcccaaagtgctgggattgcaggtg-gagccaccaca-ccGACA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22731049 126 - 121039945 aattttagtagagatgaggtttcgccatgttggctaggctggtctcaaacccttga-cctcaagtgattctcctgcctcagcctcccaaagtgctgggattacaggcacgagccaccgtgcccggcA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60019728 126 + 169600520 aattttagtagagatgaggtttcaccctgctggccaggctggtctcaaactcctaa-cctcaagtgattctcctgcctcagcctcccaaagtgctgggattacatgcatgagccaccttgcctggcA
i rheMac8.chr7              I 21 C 0
s macNem1.NW_012011533v1      3942801 125 +   4820037 -attttagtagagatgaggttttgcaattttggccaggttggtctcaaactcctga-cctcaagtaattctcctgcctcagcctcccaaagtgctgggattacaggcaggagccactgtgcccggcA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9875881 126 +  10730278 aattttagtagaggtgaggtttcacaattttggccaggttggtctcaaactcttga-cctcaagtgattctcctgcctcagcctcccaaagtgctgggattacaggcatgagtcactgtgtctgATG
i cerAty1.NW_011999477v1    I 14 C 0
s manLeu1.NW_012102632v1      3948400  39 +   4030761 -attttagtagagatgaggttttgcaattttggccaggcA---------------------------------------------------------------------------------------
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4053957 127 +   5013933 aattttagtagagatgaggtttcgccatgttggccaggctggtctcaaactcctgaccctcaagagattctcctgcctcagcatcccaaaatgctgggattacaggcaggagccactgtgcccggcA
i colAng1.NW_012114844v1    I 14 C 0
s cebCap1.NW_016107979v1        17780 107 -   1024465 aattttagtagagatgaggttttgtcatgttggccaggctgatctcaaac-----a---------------gctgcctcagcctcccaaattgctgggatcacaggtgtgagccaccacacccagcA
i cebCap1.NW_016107979v1    I 19 C 0
e chlSab2.chr29              20302317   0 -  24206276 C
e macFas5.chr7              106458852   0 - 171882078 C

a score=34900.000000
s hg38.chr15_KI270850v1_alt     54006 8 +    430880 TAAGGAGC
s panPan2.chr15              23089726 8 -  99763055 TAAGGAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       345254 8 -    378907 TAAGGAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22731175 8 - 121039945 TAAGGAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60019854 8 + 169600520 TAAGAAGC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3942926 8 +   4820037 TAAGGAGC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9876007 8 +  10730278 TAAGGAGC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              20302317 8 -  24206276 TAAGGAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3948439 8 +   4030761 TAAGGAGC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4054084 8 +   5013933 TAAGGACC
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1        17887 8 -   1024465 TAAAGAGC
i cebCap1.NW_016107979v1    C 0 C 0
e macFas5.chr7              106458852 0 - 171882078 C

a score=1146467.000000
s hg38.chr15_KI270850v1_alt     54014 233 +    430880 CTCTTATACCACTGTCTCTTC--CTCTGTGATTGGGGGGCTCCATGCCTCTAGCTGGGATGATGATGATGTCCAGACCTGGGAGGGCCCCAGGGCTACCCACCTCTAAAAGTCAGAGGGCAGGAAGCAAGAAACAGTCATAGGACTGCCCCGGAGGGTGCTGGGGTCACCTGTCCCCAG-GCTGCAGCTGCCTGTGGCCTGGCACCTCCCCTCCCCAGAGGCTGGTGCCCGCCTCC
s panPan2.chr15              23089734 228 -  99763055 CTCTTGTACCACTGTCTCTTC--CCC--CGATTGGGGGAATCCATGCCTCTAGCTGG---GATGATGATATCCAGACCTGGGAGGAGCCCAGGGCTACCCACCTCTAAAAGTCAGAGGGCAGGAAGCAAGAAACATTCATAGGGCTGCCCTGGAGGGTGCTGGGGTCACCTGCCCCCCA-GCTGGAGCTGCCTTTGGCCTGGCACCTCCCTTCCCCAGAGGCTGATGCCCGCCTCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       345262 229 -    378907 CTCTTATACCACTGTCTGTTC--CTCT-TGATTGGGGGGCTCCATGCCTCTAGCTGG---GATGATGATGTCCAGACCTGGGAGGAGCCCAGGGCTACCCACCTCTAAAAGTCAGAGGGCCGGAAGCAAGAAACAGTCATAGGACTGCCCTGGAGGGTGCTGGGGTCACCTGTCCCCAG-GCTGCAGCTGCCTGTGGCCTGGCACCTCCCCTCCCCAGAGGCTGGTGCCCGCCTCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22731183 228 - 121039945 CTCTTATACCACCATCTCTTC--CCCTATGATTGGGGGAATCCATGCCTCTAGCTGG---GATGATGATGTCCAGATCTGGGAGGAGCCCAGGGCTACCCACCTCTAAAAGTCACAGGGCAGGAAGCAAGAAACATTCATAGGGCTGCCCTGGAGGGTGCTGGGGTCACCTGCCCCCCA-GCTGGAGCTGCCTTTGGCCTGGCACCTCCCCTCCC--AAGGCTGGTGCCCGCCTCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60019862 230 + 169600520 CTTTCATACCACTGTCTCTTC--CCCTGTGATTGGGGGAATCCAAGCCTCTAGTTGG---GATGATGATGTCCAGACCTGGGAGGAGCCCAGGGCTACCCACCTCTAAAAGTCAGAGGGCGGGAAGCAAGAAACAGTCATAGGGCTGCCCTGGAGGGTGCTGGGGTCACCTGCCCCGCA-GCTGGAGCTGCCTTTGGCCTGGCACCTCCCTTCCCCAGAGGCTGGTGTCTGCCTCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106458852 231 - 171882078 CTCTTATAATACTGTCTCTTT--CCTTATGACTGGGGAGCTCCACGCCTCTAGCTGG---GATGATGACGTTCAGACCTGGGAGGAATCCAGGGCTACCCACCTCTAAAATTCGGAGGGCAAGAAGCAAGAAACAGTCACAGCACTGCCCTGGAGGCTGCTGGGGTCACCTGTCCCCCAGGCTGGAGCTGCCTCTGGCCTCGCACCTCCCTTCCCCAGAGACTGGTGCCCGCCTCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3942934 230 +   4820037 CTCTTGTTCAGCTGTCTCTTC--CCCTATGGTTGGGGTAATCTATGCCTTTAGCTGG---GATGCTGATGTCCAGACCTGGGAGGAGCCCAGGGCTACCCACCTGTAAAAGTCAGAGGGCAGGAAGCAAGAAACAGTCATGGAGCTGCCCTGGAGGTTGCTGCCATCACCTGCCCCCCA-GCTGGAGCTGCCTTTGGCCTGGCACCTCCCCTCCCCAGAGGCTGGTGCCTGCCTCC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9876015 229 +  10730278 CTCTTGTACCACTGTCTCCAC--CCCTATGGTTAGGG-AATCCATGCCTCTAGCTGG---CATGATGATATCCAGACCTGGGAGGAGCCCAAGGCTACCCACCTCTAAAAGTCAGAGGACAGGAAGCAAGAAACAGTCATGAAGCTGCCCTGGAGGGTGCTGCCATCACCTGCCCCCCA-GCTGGAGCTGCCTTTGGCCTGGCACCTCCCCTCCCCAGAGGCTGCTGCCCACCTCC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              20302325 231 -  24206276 CTCTTATAATACTGTCTCTTT--CCTTATGACTGGAGAGCTCCACGCCTCTAGCTGG---GATGATGACGTTCACACCTGGGAGGAATCCAGGGCTACCCACCTCTAAAATTCGGAGGGCAAGAAGCAAGAAACAGTCACAGCACTGCCCTGGAGGCTGCTGGGGTCACCTGTCCCCCAGGCTGGAGCTGCCTCTGGCCTCGCACCTCCCTTCCCCAGAGACTGGTGCCCGCCTCC
i chlSab2.chr29             C 0 I 212
s manLeu1.NW_012102632v1      3948447 230 +   4030761 CCCTTGTTCCACTGTCTCTTC--CCCTATGGTTGGGGTAATCTATGCCTTTAGCTGG---GATGATGATGTCCAGACCTGGAAGGAGCCCACGGCTACGCACCTGTAAAAGTCAGAGGGCAGGAAGCAAGAAACAGTCATGGAGCTGCCCTTGAGGGTGCTGCCATCACCTGCCCCCCA-GCTGGAGCTGCCTTTGGCCTGGCACCTCCCCTCCCCAGAGGCTGGTGCCTGCCTCT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4054092 230 +   5013933 CTCTTATACCACTGTCTCCAC--TCCTATGATTGGGGGAATCCATGCCTCTAGCTGG---GAAGATGATGTCCAGACCTGGGAGGAGCCCAGGGCTACCCACCTCTAAAAGTCAGAGGGCAGGAAGCAAGAAACAGTCATGGAGCTGCCCTGGAGGGTGCTGGGGTCACCTGCCCCCCA-GCTGGAGCTGCCTTTGGCCTGGCACCTCCCCTCCCCAGAGGCTGGTGCCTGCCTCC
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1        17895 231 -   1024465 CTCTCACACCACTGTCTCTCTTGCCCTGTGACTGGGGGTCTCCATGCCTCGAGCTGG---GATGATGCTGTCCAGACCTGGGAGGAGCCCAGGGTTACCCGCCTCTAAAAGTCAGAGGGCAGGAAGGAAGAAACAGTCACAGGACCGCCCTGGAGGGTG-TGGGGTCACCTGCCCCCAG-GGTGGAGCTGCCTTTGGCCTTGCACCTCCCCTCCCCAGAGGCCAGTGCCTGCCTCC
i cebCap1.NW_016107979v1    C 0 C 0

a score=186474.000000
s hg38.chr15_KI270850v1_alt     54247 57 +    430880 CACATCTTCTTGGATGGGTCAGAGGTTACAGTCTCTTTCAGCTCACCCGACTTCTC---C
s panPan2.chr15              23089962 60 -  99763055 CAGCCCTTCTTGGATGGGGTGGAGGTTACCATCTTCTTCACCTCGACTGGCTTCTCCTGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       345491 57 -    378907 CAGATCTTCTTGGATGGGTCGGAGGTTACAGTCTCTTTCAGCTCACCTGATTTCTT---C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22731411 60 - 121039945 CAGCCCTTCTTGGATGGGGCAGAGGTTACCATCTTCTTCACCTCGCCTGGCTTCTCCTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60020092 57 + 169600520 CAGCCCTCCTTGGATGGGGTGGGGGCTACTGTCTGCCTCACCTCGCTCAGCTCCTG---C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106459083 57 - 171882078 TAGCCCTTATTGGATGGGGCAGGGGTTGCTATCTGCTTCGGCTTGGCCAGCTGCTC---C
i macFas5.chr7              C 0 I 97
s macNem1.NW_012011533v1      3943164 57 +   4820037 CAGCCCTTCTTGGATGGGGCAGAGGTTACCATCTCCTTCACCTCGCTCAGCTTCTC---C
i macNem1.NW_012011533v1    C 0 I 3
s cerAty1.NW_011999477v1      9876244 57 +  10730278 CAGCCCTTCTTGGATGGGGCAGAGGTTACCATCTCCTTCACCTTGCTCAGTGTCTC---C
i cerAty1.NW_011999477v1    C 0 I 3
s manLeu1.NW_012102632v1      3948677 57 +   4030761 CAGCCCTTCTTGGATGGGGCAGAGGTTACCATCTCCTTCACCTTGCTCAGCTTCTC---C
i manLeu1.NW_012102632v1    C 0 I 3
s colAng1.NW_012114844v1      4054322 57 +   5013933 CAGCCCTTCTTGGATGGGGCAGAGGTTACCATCTCATTCACCTCACTCAGTTTCTC---C
i colAng1.NW_012114844v1    C 0 I 3
s cebCap1.NW_016107979v1        18126 53 -   1024465 CAGCCCTCC-TGGATGGGGCAGGGGTTACCATCTCCT---GTTCGCCAAGCTTCTC---C
i cebCap1.NW_016107979v1    C 0 I 3
e chlSab2.chr29              20302556 212 -  24206276 I

a score=1110472.000000
s hg38.chr15_KI270850v1_alt     54304 312 +    430880 AGCTCCTTTACTTGCTGCTCCAACTGCAGTGTGCTCTTGTTCTCGTTGTTCTGGACAGAGAGAAGCAATCAGTGGCCACCCACTAAAACTGGAGACCCCAGAACTTAGTGTCTGCCTCCCATGGCACCGGGAAGGGTGGAGGCAGGTTAGAAAAAT-ATCCCCTCTCTCCCACAGCCATCAGAGCGGG---------GCTCTGGCTCACAGATGCCTTTAGAAGTACCATTTCATGTGAAGGCTACAATGccccattttacaggtggggaaacaaaggccttgagggctaggGAAGAGGGCAGCCTCCCCAGGTGGGGCAAC
s panPan2.chr15              23090022 322 -  99763055 AGCTCCTTTACTTGATTCTCCAACTGTAGTGTGCTCTTGTTCTCATTGTTCTGGACAGAGAGAAGCAATCAGTGGCCATCCACTGCAGCTGGAGACCCCTGAACTTGGTGTCTGCCTCCCATGTCACCGGGAAAGGTGGAGTCGGGTTAGAAAAATCATCCCCTCTCCCCTACAGCCATCAGAGGAGGGCCTGATGAGCTCTGGCTCACAGGTGCCTTTAGAAGTACCATTTTATGTGAGGGCTACACTGccccattttacaggtggggaaacaaaggcctggagggACAGGGATGAGGGCAGGCTCCCCAGGTGGGGCAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       345548 312 -    378907 AGCTCCTTTGCTTTCTGCTCCACCTGCAGTGTGCTCTTGTTCTCGTTGTTCTGGACAGAGAGAAGCAATCAGTGGCCACCCACTAAAACTGGAGACCCCAGAACTTAGTGTCTGCCTCCCATGGCACCGGGAAGGGTGGAGGCAGGTTAGAAAAAT-ATCCCCTCTCTCCCACAGCCATCAGAGCAGG---------GCTCTGGCTCACAGATGCCTTTAGAAGTACCATTTCATGTGAAGGCTACAATGccccattttacaggtggggaaacaaaggTCTTGAGGGCTAGGGAAGAGGGCAGCCTCCCCAGGTGGGGCAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22731471 319 - 121039945 AACTCCTTTGCTTCCTGCTCAAATTGCAGTGCGCTC---TTCTCGTTGTTCTGCACAGAGAGAAGCAATCAGTGGCCATCCGCTGCAGCTGGGGACCCCTGAACTTGGTGTCTGCCTCCCATGTCACCGGGAAGGGTGGAGGCAGGTTAGAAAAATCATCCCCTCTCCCCCACAGCCATCAGAGGAGGGCCTGATGAGCTCTGGCTCACAGGTGCCTTTAGAAGTACCATTTCACGTGAGGGCTACGCTGTcccattttacaggtggggaaacaaaggcctggagggAGAGGGATGAGGGGAGGCTCCCCAGGTGGGGCAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60020149 322 + 169600520 AGCTCCTTTACTTGCTGCTCCAACTGCAGTGCGCTCTGGTTTTCATTGTTCTGGACAGAGAGAAGCAATCAGTGGCCAGCCACTGCAGCTGGAGACCCCAGAACTTGGTGTCTACCTCCCATGTCACCGGGAAGGGTGGAGGCAGGTTAGAAAAACCATCCCGTCTCCCCAACAGCCATCAGAGCAGGGCCTGATGAGCTCTGGCTCACAGGTGACTTTAGAAGTACCATTTCATGTGAGGGCTACACTGccccattttacaggtggggaaacaaaggcctggagggttaggGATAAGGGCAGGCTCCCCAGGTGGGGCAAC
i rheMac8.chr7              C 0 I 86
s macNem1.NW_012011533v1      3943224 321 +   4820037 AGCTGCTTTACTTGCTGCTCCAA-TGCAGTGCGCTTTGGTTCTCATTGTTCTGGACAGAGAGAAGCAATCAGTGGCCAGCCACTGCAGCTGGAGACCCCAGAACTTGGTGTCTGCCTCCCATGTCACTGGGAAGGGTGGAGGCAAGTTAGAAAAATCATCCCCTCTCCCTCACAGCCATCAGAGCAGGGCCTGATGAGCTCTGGCTCACAGATGCctttagaagtaccatgtcatgtgaggactacactgcctcattttacaggtggggaaacaaaggcctggagggctaggGATGAGGGCAGGCTCCCCAGGTGGGGCAAC
i macNem1.NW_012011533v1    I 3 C 0
s cerAty1.NW_011999477v1      9876304 320 +  10730278 AGCTCCTTTACTTGCTGCTTCAACTGCAGTACGCTCTTGTTCTCATTGTTCTGGACAGAGAGAAGCAATCAGTGGCCAGCCACTGCAGCTGGAGACCCCAGAACTTGGTGTCTGCCTCCCATGTCACCGGAAAGGGTGGAAGTAGGTTGGAAAAATCATCCC--CTTCCCCACAGCCATCAGAGCAGGGCCTGATGAGCTCTGGCTCACAGATGCCTTTAGAAGTACCATGTCATGTGAGGGCTACACTGccccattttacaggtggggaaacaaaggcctggagggctaggGATGAGGGCAGGCTGCCCAGGTGGGGCAAC
i cerAty1.NW_011999477v1    I 3 C 0
s manLeu1.NW_012102632v1      3948737 322 +   4030761 AGCTCCTTTATTTGCTGCTCCAACTGCAGTGTGCTTTTGTTCTCATTGTTCTGGACAGAGAGAAGCAATCAGTGGCCAGCCACTGCAGCTGGAGACCCCAGAACTTGGTGTCTGCCTCCCATGTCACCGGGAAGGGTGGAGGTAGGTTAGAAAAATCATCCCCTCTCCCCTACAGCCATCAGAGCAGGGCCTGATGAGCTCTGGCTCACAGATGCCTTTAGAAATACCATGTCATGTGAGGGCTACACTGccccattttacaggtggggaaacaaaggcctggagggctaggGATGAGGGCAGGCTGCCCAGGTGGGGCAAC
i manLeu1.NW_012102632v1    I 3 C 0
s colAng1.NW_012114844v1      4054382 322 +   5013933 AGCTACTTTACTTGCTGCTCCAATAGCAGTGCGCTCTTGTTCTTGTTGTTCTGGACAGAGAGAAGCAATCAGTGGCCAGACACTGCAGCTGGAGACCCCAGAACTTGGTGTCTGCCTCCCATATCACCAGGAAGGGTGGAGGTAGGTTAGAAAAATCATTCCCTCTCCCCTACAGCCGTCAGAGCAGGGCCTGATGAGCTCTGGCTCACAGATGCCTTTAGAAGTACCATGTTACATGAGGGCTACactgcctcattttacaggtggggaaacaaaggcctggagggctaggGATGAGGGCAGGCTGCCCAGGTGGGGCAAC
i colAng1.NW_012114844v1    I 3 I 69
s cebCap1.NW_016107979v1        18182 299 -   1024465 AGCTCCTTTCCTTCCTGGTCCAAATGCAGTGTGCTCCTGTTCTCGTTCTTCTGTACAGAGAGAAGCAATCAGTGGCCACCCACTCCAGCTGGAGACCCCAGAACTTTGTGACTGCCTCCCATGGCACCGGGAAGGGTGGA----GGTTAGAAAAATTGTCTCCTTTCTCCCACAGCCATCAGAGCAGG---------GCTCTGGCTCACAGGTGTctttagaagccccatttca---------tacactcccccattttacaggtgggaaaacaaagccccggagggatgGGAAGGAGGGCAGGCTCCCCAGGT-GGGCAAC
i cebCap1.NW_016107979v1    I 3 C 0
e chlSab2.chr29              20302556 212 -  24206276 I
e macFas5.chr7              106459140  97 - 171882078 I

a score=27082.000000
s hg38.chr15_KI270850v1_alt     54616 13 +    430880 GTACCAGCTCCTC
s panPan2.chr15              23090344 13 -  99763055 CCACCAGATCCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       345860 13 -    378907 GCACCAGCTCCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22731790 13 - 121039945 CCACCAGATCCTC
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011533v1      3943545 13 +   4820037 CCACCAGATCCTC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9876624 13 +  10730278 CCACCAGATCCTC
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3949059 13 +   4030761 TCACCAGATCCTC
i manLeu1.NW_012102632v1    C 0 I 58
s cebCap1.NW_016107979v1        18481 13 -   1024465 ACAccagctcctc
i cebCap1.NW_016107979v1    C 0 I 167
e colAng1.NW_012114844v1      4054704 69 +   5013933 I
e chlSab2.chr29              20302556 212 -  24206276 I
e macFas5.chr7              106459140 97 - 171882078 I
e rheMac8.chr7               60020471 86 + 169600520 I

a score=5592.000000
s hg38.chr15_KI270850v1_alt     54629 5 +    430880 GAAGC
s panPan2.chr15              23090357 5 -  99763055 GAAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       345873 5 -    378907 GAAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22731803 5 - 121039945 GAAGC
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011533v1      3943558 5 +   4820037 AAAGC
i macNem1.NW_012011533v1    C 0 I 53
s cerAty1.NW_011999477v1      9876637 5 +  10730278 CAAGC
i cerAty1.NW_011999477v1    C 0 C 0
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e colAng1.NW_012114844v1      4054704 69 +   5013933 I
e manLeu1.NW_012102632v1      3949072 58 +   4030761 I
e chlSab2.chr29              20302556 212 -  24206276 I
e macFas5.chr7              106459140 97 - 171882078 I
e rheMac8.chr7               60020471 86 + 169600520 I

a score=10009.000000
s hg38.chr15_KI270850v1_alt     54634 15 +    430880 CGCTGCGTGGCTCGG
s panPan2.chr15              23090362 15 -  99763055 CACACTGTGGCTCGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       345878 15 -    378907 CGCTGCGTGGCTCGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22731808 15 - 121039945 CGCGCTGTGGCTCGG
i nomLeu3.chr6              C 0 I 38
s cerAty1.NW_011999477v1      9876642 15 +  10730278 TGCACTGTGGCTCGG
i cerAty1.NW_011999477v1    C 0 C 0
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e colAng1.NW_012114844v1      4054704 69 +   5013933 I
e manLeu1.NW_012102632v1      3949072 58 +   4030761 I
e chlSab2.chr29              20302556 212 -  24206276 I
e macNem1.NW_012011533v1      3943563 53 +   4820037 I
e macFas5.chr7              106459140 97 - 171882078 I
e rheMac8.chr7               60020471 86 + 169600520 I

a score=4427.000000
s hg38.chr15_KI270850v1_alt     54649 9 +    430880 CCCGCTGCT
s panPan2.chr15              23090377 9 -  99763055 CCAGCTGCT
i panPan2.chr15             C 0 I 29
s gorGor5.CYUI01015946v1       345893 9 -    378907 CCCGCTGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s cerAty1.NW_011999477v1      9876657 9 +  10730278 CCAGCTGCT
i cerAty1.NW_011999477v1    C 0 I 29
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e colAng1.NW_012114844v1      4054704 69 +   5013933 I
e manLeu1.NW_012102632v1      3949072 58 +   4030761 I
e chlSab2.chr29              20302556 212 -  24206276 I
e macNem1.NW_012011533v1      3943563 53 +   4820037 I
e macFas5.chr7              106459140 97 - 171882078 I
e rheMac8.chr7               60020471 86 + 169600520 I
e nomLeu3.chr6               22731823 38 - 121039945 I

a score=18690.000000
s hg38.chr15_KI270850v1_alt     54658 239 +    430880 CGTACAGGGCTTCCCACCccagctccagcatcctctccagctcccgcagcctctccagctcccgcagcctctccagctcccgcAGAGTCTCCTGCTGCCACAGCCTCTCATCCTGTTGCCGAAGCCTCTCCTGCTCCAGGAGCTCCTCCACCTCGTCCAGCAGCCTCTCC--CT-CTCCAGCAGCCTCTCCTGCTCCTCCTGCCGCCTCTCCTGTTCTAACAGCTTCTCCACCTCTTCCAGC
s gorGor5.CYUI01015946v1       345902 224 -    378907 CGTAGAGGGCTTCCCACCCCAGCTCCAGCAT------------------CCTCTCCAGCTCCCGCAGCCTCTCCAGCTCCCGCAGAGTCTCCTGCTGCCACAGCCTGTCATCCTGTTGCCGAAGCCTCTCCTGCTCCAGGAGCTCCTCCACCTCGTCCAGCAGCCTCTCCTGCTCCTCCTGCCGCCTCTCCTGCTCCTCCTGCCGCCTCTCCTGTTCTAACAGCTTCTCCACCTCTTCCAGC
i gorGor5.CYUI01015946v1    C 0 C 0
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e panPan2.chr15              23090386  29 -  99763055 I
e colAng1.NW_012114844v1      4054704  69 +   5013933 I
e manLeu1.NW_012102632v1      3949072  58 +   4030761 I
e chlSab2.chr29              20302556 212 -  24206276 I
e cerAty1.NW_011999477v1      9876666  29 +  10730278 I
e macNem1.NW_012011533v1      3943563  53 +   4820037 I
e macFas5.chr7              106459140  97 - 171882078 I
e rheMac8.chr7               60020471  86 + 169600520 I
e nomLeu3.chr6               22731823  38 - 121039945 I

a score=10064.000000
s hg38.chr15_KI270850v1_alt     54897 55 +    430880 AGCCTC---TCCTGCCCTGGCAGCTTCTCCTGTTCACACAGCCTCTCCTCCTGTTCAC
s gorGor5.CYUI01015946v1       346126 55 -    378907 AGCCTC---TCCTGCCCTGGCAGCTTCTCCTCTTCACACAGCCTCTCCTCCTGTTCAC
i gorGor5.CYUI01015946v1    C 0 I 803
s nomLeu3.chr6               22731861 58 - 121039945 AGCCTCTCTTCCTGCTTTCGCAGCGTCCCCTCCTTTCGCAGCCTCCCCTCCTTCTTTC
i nomLeu3.chr6              I 38 C 0
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e panPan2.chr15              23090386 29 -  99763055 I
e colAng1.NW_012114844v1      4054704 69 +   5013933 I
e manLeu1.NW_012102632v1      3949072 58 +   4030761 I
e chlSab2.chr29              20302556 212 -  24206276 I
e cerAty1.NW_011999477v1      9876666 29 +  10730278 I
e macNem1.NW_012011533v1      3943563 53 +   4820037 I
e macFas5.chr7              106459140 97 - 171882078 I
e rheMac8.chr7               60020471 86 + 169600520 I

a score=4234.000000
s hg38.chr15_KI270850v1_alt     54952 23 +    430880 ATAGCCTCTCCTCCTGTTCACAC
s gorGor5.CYUI01015946v1       346984 23 -    378907 ATAGCCTCTCCTCCTGTTCACGT
i gorGor5.CYUI01015946v1    I 803 C 0
s nomLeu3.chr6               22731919 23 - 121039945 GCAGCCTCTCCTCCTCCTTTCGC
i nomLeu3.chr6              C 0 C 0
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e panPan2.chr15              23090386 29 -  99763055 I
e colAng1.NW_012114844v1      4054704 69 +   5013933 I
e manLeu1.NW_012102632v1      3949072 58 +   4030761 I
e chlSab2.chr29              20302556 212 -  24206276 I
e cerAty1.NW_011999477v1      9876666 29 +  10730278 I
e macNem1.NW_012011533v1      3943563 53 +   4820037 I
e macFas5.chr7              106459140 97 - 171882078 I
e rheMac8.chr7               60020471 86 + 169600520 I

a score=8292.000000
s hg38.chr15_KI270850v1_alt     54975 21 +    430880 AGCCTCTCCTCCTGTTCACGT
s panPan2.chr15              23090415 21 -  99763055 AGCCTCTCCTCCTGCTTTTGT
i panPan2.chr15             I 29 C 0
s gorGor5.CYUI01015946v1       347007 21 -    378907 AGCCTCTCCTCCTGTTCACGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22731942 21 - 121039945 AGCCTCTCCTCCTCCTTTAGC
i nomLeu3.chr6              C 0 C 0
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e colAng1.NW_012114844v1      4054704 69 +   5013933 I
e manLeu1.NW_012102632v1      3949072 58 +   4030761 I
e chlSab2.chr29              20302556 212 -  24206276 I
e cerAty1.NW_011999477v1      9876666 29 +  10730278 I
e macNem1.NW_012011533v1      3943563 53 +   4820037 I
e macFas5.chr7              106459140 97 - 171882078 I
e rheMac8.chr7               60020471 86 + 169600520 I

a score=60091.000000
s hg38.chr15_KI270850v1_alt     54996 42 +    430880 AGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCACGT
s panPan2.chr15              23090436 42 -  99763055 AGCCTCTCCTCCTTGTCCCACAGCCTCTCCTCCTGCTTTCGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       347028 42 -    378907 AGCGTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22731963 42 - 121039945 AGCCTCCCCTCCTCCTTTCGCAGCCTCCCCTCCTGCTTTCGC
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011533v1      3943616 42 +   4820037 AGCCTCTCCTCCTGCATTCGCAGCCTCTTCTCCTGTTTTTGT
i macNem1.NW_012011533v1    I 53 C 0
s cerAty1.NW_011999477v1      9876695 42 +  10730278 AGCCTCTCCTCCTGCATTCGCAGCCTCTTCTCCTGTTTTCGC
i cerAty1.NW_011999477v1    I 29 C 0
s colAng1.NW_012114844v1      4054773 42 +   5013933 AGCCTCTCCTCCTGCTTTTGCAGCCTCTCCTCCTGTTTTCGT
i colAng1.NW_012114844v1    I 69 C 0
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e manLeu1.NW_012102632v1      3949072 58 +   4030761 I
e chlSab2.chr29              20302556 212 -  24206276 I
e macFas5.chr7              106459140 97 - 171882078 I
e rheMac8.chr7               60020471 86 + 169600520 I

a score=150179.000000
s hg38.chr15_KI270850v1_alt     55038 76 +    430880 AGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCT
s panPan2.chr15              23090478 76 -  99763055 AGCCACTCCTCCTGCTTTTGCAGCCTCTCCTCCTGCTTTCGTAGCCTCTTCTCCTGGTCCCACAGCCTCTCCTCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       347070 76 -    378907 AGCCTCTCCTCCTGTTCACGTGGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCACACAGCGTCTCCTCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732005 76 - 121039945 AGCCTCTCCTCCTCCTTTTGCAGCCTCCCCTCCTCCTTTCGCAGCCTCCCCTCCTGCTTTCGCAGCGTCCCCTCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60020557 76 + 169600520 AGCCTCTCCTCCTTCTCCCACAGCCTCTCCTCCTTCTCCCACAGCCTCTCCTCCTGATCCCATAGCCTCTCCTCCT
i rheMac8.chr7              I 86 C 0
s macNem1.NW_012011533v1      3943658 76 +   4820037 AGCCTCTCCTCCTTCTCCCACAGCCTCTCCTCCTGCTTCCGTAGCCTCTCCTCCTTCTCCCACAGCCTCTCCTCCT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9876737 76 +  10730278 AGCCTCTCCTCCTTCTCCCACAGCCTCTCCTCCTGCTTTTGTAGCCTCTCCTCCTCCTTTCGCAGCCTCTCCTCCT
i cerAty1.NW_011999477v1    C 0 I 152
s colAng1.NW_012114844v1      4054815 76 +   5013933 AGCCTCTCCTCCTTCTCCCACAGTCTCTCCTCCTGCTTTTGCAGCCTCTCCTCCTCCTTTCACAGCCTCTCCTCCC
i colAng1.NW_012114844v1    C 0 C 0
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e manLeu1.NW_012102632v1      3949072 58 +   4030761 I
e chlSab2.chr29              20302556 212 -  24206276 I
e macFas5.chr7              106459140 97 - 171882078 I

a score=-150.000000
s hg38.chr15_KI270850v1_alt     55114 1 +    430880 G
s panPan2.chr15              23090554 1 -  99763055 G
i panPan2.chr15             C 0 I 197
s gorGor5.CYUI01015946v1       347146 1 -    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732081 1 - 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60020633 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3943734 1 +   4820037 C
i macNem1.NW_012011533v1    C 0 C 0
s colAng1.NW_012114844v1      4054891 1 +   5013933 G
i colAng1.NW_012114844v1    C 0 C 0
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e manLeu1.NW_012102632v1      3949072 58 +   4030761 I
e chlSab2.chr29              20302556 212 -  24206276 I
e cerAty1.NW_011999477v1      9876813 152 +  10730278 I
e macFas5.chr7              106459140 97 - 171882078 I

a score=77279.000000
s hg38.chr15_KI270850v1_alt     55115 91 +    430880 TTCATGTAGCCTCTCCTCCTGTTCATGTAGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACGT
s gorGor5.CYUI01015946v1       347147 91 -    378907 TTCAAATAGCCTCTCCTCCTGTTCACGTAGCGTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACGTAGCGTCTCCTCCTGTTCACGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732082 91 - 121039945 CTTTTGCAGCCTCCCCTTCTCCTTTCGCAGCCTCTCCTCCTCCTTTCGCAGCCTCCCCTCCTGCTTTCGCAGCCTCTCCTCCTCCTTTCGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60020634 91 + 169600520 CTTTCGTAGCCTCTCCTCCTCCTTTCACAGCCTCTCCTCCTGCTTTCATAGCCTCTCTTCCTGCTTTCACAGCCTCTCACCATGCTCCTGT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3943735 91 +   4820037 CTTTTGCAGCCTCTCCTCCTGCTTTTGTAGCCTCTTCTCCTGCTTTTGTAGCCTGTCCTCCTGCTTTCGCAGCCTCTTACCCTGCTCCCCC
i macNem1.NW_012011533v1    C 0 C 0
s colAng1.NW_012114844v1      4054892 91 +   5013933 CTTTCGCAGCCTCTCCTCCTGCTTTTGTAGCCTGTCCTCCTGCTTTCGCAGCCTCTCACCCTGCTCCCCCAGCCTCTTCTGCTTCTCCCGA
i colAng1.NW_012114844v1    C 0 C 0
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e panPan2.chr15              23090555 197 -  99763055 I
e manLeu1.NW_012102632v1      3949072 58 +   4030761 I
e chlSab2.chr29              20302556 212 -  24206276 I
e cerAty1.NW_011999477v1      9876813 152 +  10730278 I
e macFas5.chr7              106459140 97 - 171882078 I

a score=71080.000000
s hg38.chr15_KI270850v1_alt     55206 70 +    430880 AGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACACAGCCTCT
s gorGor5.CYUI01015946v1       347238 70 -    378907 AGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACGTAGCGTCTCCTCCTGTTCACGTAGCGTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732173 70 - 121039945 AGCCTCCCCTCCTCCTTTTGCAGCCACCCCTCCTGCTTTCGCAGCCTCTGCTCCTGCTTTTGCAGCCTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60020725 67 + 169600520 AGCCTCTCCTGCTGCTTCCGAAGCCTCTCCTTTTGCTCACACAGCCT---CTCCTGCTCCCGCAGCCTCC
i rheMac8.chr7              C 0 I 3
s macNem1.NW_012011533v1      3943826 67 +   4820037 AGCCTCTTCTGCTGCTCCCAAAGCCTCTCCTTTTGCTCACATAGTCT---CTCCTGCTCCTGCAGCCTCC
i macNem1.NW_012011533v1    C 0 I 3
s manLeu1.NW_012102632v1      3949130 70 +   4030761 AGCCTCTCCTCCTGCATTCGCAGCCTCTCCTCCTGCTTTCGTAGCCTCTCCTCCTTCTCCCACAGCCTCT
i manLeu1.NW_012102632v1    I 58 I 119
s colAng1.NW_012114844v1      4054983 46 +   5013933 ---------------------AGCCTCTCCTTTTGCTCACATAGTCT---CTCCTCCTCCCGCAACCTCC
i colAng1.NW_012114844v1    C 0 I 3
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e panPan2.chr15              23090555 197 -  99763055 I
e chlSab2.chr29              20302556 212 -  24206276 I
e cerAty1.NW_011999477v1      9876813 152 +  10730278 I
e macFas5.chr7              106459140 97 - 171882078 I

a score=20795.000000
s hg38.chr15_KI270850v1_alt     55276 35 +    430880 CCTCCTGTTCATGTAGCCTCTCCTCCTGTTCATGT
s gorGor5.CYUI01015946v1       347308 35 -    378907 CCTCCTGTTCACGTAGCGTCTCCTCCTGTTCATGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732243 35 - 121039945 CACCCTTCTCCTGTAGCATCTCCTGCTGCTCCTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60020795 21 + 169600520 CCTCCTGCTTTCAGAGGCTCT--------------
i rheMac8.chr7              I 3 C 0
s macNem1.NW_012011533v1      3943896 35 +   4820037 CCTTCTGCTCTTGGAGCCTCTCCTCCTGCTCTTGG
i macNem1.NW_012011533v1    I 3 C 0
s colAng1.NW_012114844v1      4055032 35 +   5013933 CTTCCTGCTCTTGGAGCCTCTCCTCCTGCTCTTGG
i colAng1.NW_012114844v1    I 3 C 0
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e panPan2.chr15              23090555 197 -  99763055 I
e manLeu1.NW_012102632v1      3949200 119 +   4030761 I
e chlSab2.chr29              20302556 212 -  24206276 I
e cerAty1.NW_011999477v1      9876813 152 +  10730278 I
e macFas5.chr7              106459140 97 - 171882078 I

a score=1140.000000
s hg38.chr15_KI270850v1_alt     55311  7 +    430880 AGCCT------------------------------------------CT
s gorGor5.CYUI01015946v1       347343  7 -    378907 AGCCT------------------------------------------CT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732278 49 - 121039945 AGCTTCTTGTTTGTCTCACACAGTCTCTCCCGCTCCCACAGCATCCGCT
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011533v1      3943931  7 +   4820037 AGCCT------------------------------------------CT
i macNem1.NW_012011533v1    C 0 C 0
s manLeu1.NW_012102632v1      3949319  7 +   4030761 AGCCT------------------------------------------CT
i manLeu1.NW_012102632v1    I 119 C 0
s colAng1.NW_012114844v1      4055067  7 +   5013933 AGCCT------------------------------------------CT
i colAng1.NW_012114844v1    C 0 C 0
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e panPan2.chr15              23090555 197 -  99763055 I
e chlSab2.chr29              20302556 212 -  24206276 I
e cerAty1.NW_011999477v1      9876813 152 +  10730278 I
e macFas5.chr7              106459140 97 - 171882078 I
e rheMac8.chr7               60020816  0 + 169600520 C

a score=13608.000000
s hg38.chr15_KI270850v1_alt     55318 6 +    430880 CCTCCT
s gorGor5.CYUI01015946v1       347350 6 -    378907 CCTCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732327 6 - 121039945 CCTCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60020816 6 + 169600520 CCTCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106459237 6 - 171882078 CTTTCC
i macFas5.chr7              I 97 C 0
s macNem1.NW_012011533v1      3943938 6 +   4820037 CCTCCT
i macNem1.NW_012011533v1    C 0 C 0
s manLeu1.NW_012102632v1      3949326 6 +   4030761 CCTCCT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4055074 6 +   5013933 CCTCCT
i colAng1.NW_012114844v1    C 0 I 136
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e panPan2.chr15              23090555 197 -  99763055 I
e chlSab2.chr29              20302556 212 -  24206276 I
e cerAty1.NW_011999477v1      9876813 152 +  10730278 I

a score=30949.000000
s hg38.chr15_KI270850v1_alt     55324 30 +    430880 GTTCACGTAGCCTCTCCTCCTGTCTCCTGT
s gorGor5.CYUI01015946v1       347356 30 -    378907 GTTCACATAGCCTCTCCTCCTGTCTCCTGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732333 30 - 121039945 GCTCTCGGAGCCTCTGCTTTTGTTCCTTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60020822 30 + 169600520 GATCCCGAAGCCTCTCCTTTTGTTCCTCGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106459243 27 - 171882078 GCTCCTGCGGCCTCTAC---TGCTCCCGGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3943944 30 +   4820037 GCTCCTGGAGTCTCTCCTTTTGTTCCTTGC
i macNem1.NW_012011533v1    C 0 C 0
s manLeu1.NW_012102632v1      3949332 30 +   4030761 GCTCCTGGAGTCTCTCCTTTTGTTCCTTGT
i manLeu1.NW_012102632v1    C 0 C 0
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e panPan2.chr15              23090555 197 -  99763055 I
e colAng1.NW_012114844v1      4055080 136 +   5013933 I
e chlSab2.chr29              20302556 212 -  24206276 I
e cerAty1.NW_011999477v1      9876813 152 +  10730278 I

a score=33764.000000
s hg38.chr15_KI270850v1_alt     55354 17 +    430880 TCAGGAGACTCAACATC
s panPan2.chr15              23090752 17 -  99763055 TCAGGAGACTCAAGGTC
i panPan2.chr15             I 197 C 0
s gorGor5.CYUI01015946v1       347386 17 -    378907 TCAGGAGACTCAACATC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732363 17 - 121039945 TCTGGAGACTCAAGGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60020852 17 + 169600520 TCAGGAGACTCAAGGCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106459270 17 - 171882078 TCAGGCGACTCAAGCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3943974 17 +   4820037 TCAGGAGACTCAAGGCC
i macNem1.NW_012011533v1    C 0 C 0
s manLeu1.NW_012102632v1      3949362 17 +   4030761 TCAGGAGAGTCAAGGCC
i manLeu1.NW_012102632v1    C 0 C 0
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e colAng1.NW_012114844v1      4055080 136 +   5013933 I
e chlSab2.chr29              20302556 212 -  24206276 I
e cerAty1.NW_011999477v1      9876813 152 +  10730278 I

a score=20741.000000
s hg38.chr15_KI270850v1_alt     55371 8 +    430880 TGATTGTT
s panPan2.chr15              23090769 8 -  99763055 TGGTTGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       347403 8 -    378907 TGATTGTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732380 8 - 121039945 TGGTTGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60020869 8 + 169600520 TGATTGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106459287 8 - 171882078 TCATTGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3943991 8 +   4820037 TGATTGTT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9876965 8 +  10730278 TGATTGTT
i cerAty1.NW_011999477v1    I 152 C 0
s manLeu1.NW_012102632v1      3949379 8 +   4030761 TGATTGTT
i manLeu1.NW_012102632v1    C 0 C 0
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e colAng1.NW_012114844v1      4055080 136 +   5013933 I
e chlSab2.chr29              20302556 212 -  24206276 I

a score=34380.000000
s hg38.chr15_KI270850v1_alt     55379 8 +    430880 TTCCACCT
s panPan2.chr15              23090777 8 -  99763055 TTCCACCT
i panPan2.chr15             C 0 I 32
s gorGor5.CYUI01015946v1       347411 8 -    378907 TTCCACCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732388 8 - 121039945 TTCCACCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60020877 8 + 169600520 TTCCACCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106459295 8 - 171882078 TTCCACCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3943999 8 +   4820037 TTCCACCT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9876973 8 +  10730278 TTCCACCT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              20302768 8 -  24206276 TTCCACCT
i chlSab2.chr29             I 212 C 0
s manLeu1.NW_012102632v1      3949387 8 +   4030761 TTCCACCT
i manLeu1.NW_012102632v1    C 0 C 0
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e colAng1.NW_012114844v1      4055080 136 +   5013933 I

a score=65479.000000
s hg38.chr15_KI270850v1_alt     55387 31 +    430880 CAGCCTGGAGCTGTCTTCCCACACTCTCTAG
s gorGor5.CYUI01015946v1       347419 31 -    378907 CAGCCTGGAGCTGTCTTCCCACACTCTCTAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732396 31 - 121039945 GGGATTGGAGCTTTCCCTCCAGTACCTCCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60020885 31 + 169600520 GGGAATGGAGCTTTCCCTCCAAACTCTCCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106459303 31 - 171882078 GGGCTTGGAGCTGTCCTGCCAGACTCTCCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3944007 31 +   4820037 GGGATTGGAGCTTTCCCTCCAGACTTTCCAC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9876981 31 +  10730278 GGGATTGGAGCTTTCCCTCCAGACTTTCCAC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              20302776 31 -  24206276 GGGCTTGGAGCTGTCCTGCCAGACTCTCCAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3949395 31 +   4030761 GGGATTGGAGCTTTCCCTCCAGACTTTCCAC
i manLeu1.NW_012102632v1    C 0 C 0
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e panPan2.chr15              23090785 32 -  99763055 I
e colAng1.NW_012114844v1      4055080 136 +   5013933 I

a score=3321.000000
s hg38.chr15_KI270850v1_alt     55418 1 +    430880 C
s gorGor5.CYUI01015946v1       347450 1 -    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732427 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60020916 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106459334 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3944038 1 +   4820037 C
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9877012 1 +  10730278 C
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              20302807 1 -  24206276 C
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3949426 1 +   4030761 C
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4055216 1 +   5013933 C
i colAng1.NW_012114844v1    I 136 C 0
e cebCap1.NW_016107979v1        18494 167 -   1024465 I
e panPan2.chr15              23090785 32 -  99763055 I

a score=189494.000000
s hg38.chr15_KI270850v1_alt     55419 49 +    430880 TCCTTCCTTAGGTGGTTGGTCTCATCTTGTA---GCTGCTCCACCTTAGATG
s panPan2.chr15              23090817 49 -  99763055 TCCTTCCTCAGCTGTTTGGCCTCATCTTGTA---GCTGCTCCAACTCAGAGG
i panPan2.chr15             I 32 C 0
s gorGor5.CYUI01015946v1       347451 49 -    378907 TCCTTCCTTAGGTGGTTGGTCTCATCTTGTA---GCTGCTCCACCTTAGATG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732428 49 - 121039945 TCCTTCCTCAGCTGTTTGGCCTCATCTTGTA---GCTGCTCCAACTCAGAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60020917 49 + 169600520 TTCTTCTTCAGGTACCTGACCTCATCTTGTA---GCTGCTTCACCTCAGATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106459335 52 - 171882078 TCCTTTCACAGGTGCTTGACCTCAGCTTATAGCTGCTGCTCCACCTCTGAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3944039 49 +   4820037 TCCTTCCTCAGGTGTTTGGCCTCATCTTGTA---GCTGTTCCACCTCAGAGG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9877013 49 +  10730278 TCCTTCCTCAGGTGTTTGGCTTCATCTTGTA---GCTGTTCCACCTCAGATG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              20302808 52 -  24206276 TCCTTTCACAGGTGCTTGACCTCAGCTTATAGCTGCTGCTCCACCTCTGAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3949427 49 +   4030761 TCCTTCCTCAGGTGTTTGGCTTCATCTTGTA---GCTGTTCCACCTCAGAGG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4055217 49 +   5013933 TCCTTCCTCAGGTGTTTGGCCTCATCTTGTA---GCTGTTCCACCTCAGATG
i colAng1.NW_012114844v1    C 0 C 0
e cebCap1.NW_016107979v1        18494 167 -   1024465 I

a score=327004.000000
s hg38.chr15_KI270850v1_alt     55468 69 +    430880 GCCCTGCTGGGGGCTCTGGGGCCAGGGGTTCAGCTGAGAAAGCAAGCAGAGAATAAGGGCCTCTGGATT
s panPan2.chr15              23090866 69 -  99763055 TCCCTGCTGGGGGTGCCGGGAACCGGGGCTCAGCTGAGAAATGAAGCAGACAATAAGGGCCTCTGGATT
i panPan2.chr15             C 0 I 23
s gorGor5.CYUI01015946v1       347500 68 -    378907 GCCCTGCTGGGGGCTCTGGGGCCA-GGGTTCAGCTGAGAAAGGAAGCAGAGAATAAGGGCCTCTGGATT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732477 69 - 121039945 TCCCTGCTGGGGGTGCCAGGGACTGGGGCTCAGCTGAGAAATGAAGCAGACAATAAGGGCCTCTGGATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60020966 69 + 169600520 TCTCTGCTGGGGGTGCTGGGGACAGGGGGTCAGCTGAGAAAGGAAGCAGACAATAAGGGCCTCTGGATT
i rheMac8.chr7              C 0 I 19
s macFas5.chr7              106459387 69 - 171882078 GTCCTGCTGGGGGCTCCAGGTGTAGGGGTTCAGCTGAGAAAGGAAGCAGACAATAAGGGCCTCTGGATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3944088 69 +   4820037 TCCCTACTGGGGGTGCCGAGGATGGGGGCTCAGCTGAGAAATGAAACAGACAATAAGGGCCTGTGGATT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9877062 69 +  10730278 TCCCTGCTGGGGGTGCTGAGGATGGAGGCTCAGCTGAGAAATGAAGCAGACAATAAGGGCCTCTGGATT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              20302860 69 -  24206276 GTCCTGCTGGGGGCTCCAGGTGTAGGGGTTCAGCTGAGAAAGGAAGCAGACAATAAGGGCCTCTGGATT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3949476 69 +   4030761 TCCCTGCTGGGGGTGCTGAGGATGAGGGCTCAGCTGAGAAGTGAAGCAGACAATAAGGGCCTGTGGATT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4055266 69 +   5013933 TCCCTGCTGGGTCCACCAGGGATGGGGGCTCAGCTGAGAAATGAAGCAGACAATAAGGCCCTCTGGATT
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1        18661 69 -   1024465 GCCCTGCTGGGGGCTTCGGGATTGGGGGTTCAGCTGAGAAAGGAAGCAGACAATGAGGGCCTCTGGATC
i cebCap1.NW_016107979v1    I 167 C 0

a score=5500.000000
s hg38.chr15_KI270850v1_alt     55537 1 +    430880 C
s gorGor5.CYUI01015946v1       347568 1 -    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732546 1 - 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60021054 1 + 169600520 C
i rheMac8.chr7              I 19 C 0
s macFas5.chr7              106459456 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3944157 1 +   4820037 C
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9877131 1 +  10730278 C
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              20302929 1 -  24206276 C
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3949545 1 +   4030761 C
i manLeu1.NW_012102632v1    C 0 I 46
s colAng1.NW_012114844v1      4055335 1 +   5013933 C
i colAng1.NW_012114844v1    C 0 I 45
s cebCap1.NW_016107979v1        18730 1 -   1024465 C
i cebCap1.NW_016107979v1    C 0 C 0
e panPan2.chr15              23090935 23 -  99763055 I

a score=4490.000000
s hg38.chr15_KI270850v1_alt     55538 2 +    430880 TC
s gorGor5.CYUI01015946v1       347569 2 -    378907 TC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732547 2 - 121039945 CC
i nomLeu3.chr6              C 0 I 20
s rheMac8.chr7               60021055 2 + 169600520 CC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106459457 2 - 171882078 TC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3944158 2 +   4820037 CC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9877132 2 +  10730278 CC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              20302930 2 -  24206276 TC
i chlSab2.chr29             C 0 C 0
s cebCap1.NW_016107979v1        18731 2 -   1024465 TC
i cebCap1.NW_016107979v1    C 0 C 0
e panPan2.chr15              23090935 23 -  99763055 I
e colAng1.NW_012114844v1      4055336 45 +   5013933 I
e manLeu1.NW_012102632v1      3949546 46 +   4030761 I

a score=-90.000000
s hg38.chr15_KI270850v1_alt     55540 5 +    430880 aaaaa-
s gorGor5.CYUI01015946v1       347571 5 -    378907 aaaaa-
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60021057 5 + 169600520 AAAAA-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106459459 5 - 171882078 AAAAA-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3944160 5 +   4820037 TCCAA-
i macNem1.NW_012011533v1    C 0 I 42
s cerAty1.NW_011999477v1      9877134 5 +  10730278 CACCC-
i cerAty1.NW_011999477v1    C 0 I 10
s chlSab2.chr29              20302932 5 -  24206276 AAAAA-
i chlSab2.chr29             C 0 C 0
s cebCap1.NW_016107979v1        18733 5 -   1024465 -AAAAC
i cebCap1.NW_016107979v1    C 0 C 0
e panPan2.chr15              23090935 23 -  99763055 I
e colAng1.NW_012114844v1      4055336 45 +   5013933 I
e manLeu1.NW_012102632v1      3949546 46 +   4030761 I
e nomLeu3.chr6               22732549 20 - 121039945 I

a score=339.000000
s hg38.chr15_KI270850v1_alt     55545 4 +    430880 aaaa
s gorGor5.CYUI01015946v1       347576 4 -    378907 aaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60021062 4 + 169600520 GAAA
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9877149 4 +  10730278 CTCA
i cerAty1.NW_011999477v1    I 10 C 0
s cebCap1.NW_016107979v1        18738 4 -   1024465 ATAA
i cebCap1.NW_016107979v1    C 0 C 0
e panPan2.chr15              23090935 23 -  99763055 I
e colAng1.NW_012114844v1      4055336 45 +   5013933 I
e manLeu1.NW_012102632v1      3949546 46 +   4030761 I
e chlSab2.chr29              20302937 0 -  24206276 C
e macNem1.NW_012011533v1      3944165 42 +   4820037 I
e macFas5.chr7              106459464 0 - 171882078 C
e nomLeu3.chr6               22732549 20 - 121039945 I

a score=1365.000000
s hg38.chr15_KI270850v1_alt     55549 1 +    430880 a
s panPan2.chr15              23090958 1 -  99763055 A
i panPan2.chr15             I 23 C 0
s gorGor5.CYUI01015946v1       347580 1 -    378907 a
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60021066 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9877153 1 +  10730278 A
i cerAty1.NW_011999477v1    C 0 C 0
s cebCap1.NW_016107979v1        18742 1 -   1024465 A
i cebCap1.NW_016107979v1    C 0 C 0
e colAng1.NW_012114844v1      4055336 45 +   5013933 I
e manLeu1.NW_012102632v1      3949546 46 +   4030761 I
e chlSab2.chr29              20302937 0 -  24206276 C
e macNem1.NW_012011533v1      3944165 42 +   4820037 I
e macFas5.chr7              106459464 0 - 171882078 C
e nomLeu3.chr6               22732549 20 - 121039945 I

a score=60467.000000
s hg38.chr15_KI270850v1_alt     55550 30 +    430880 aaaaaaaaTCCTCCCTTTGGTGCACAGCTC
s panPan2.chr15              23090959 30 -  99763055 AAAAAAACCCCTCCTTTTGATGCACAGCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       347581 30 -    378907 aaaaaaaTTCCTCCCTTTGGTGCACAGCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732569 30 - 121039945 AAAAAAAACCCTCCTCTTGATGCACAGCTC
i nomLeu3.chr6              I 20 C 0
s rheMac8.chr7               60021067 30 + 169600520 AAATAAAACCCTCCTCTTGATGCACAGCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106459464 23 - 171882078 -------ACCCTCCTCTTGGTGCACAGCTC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9877154 25 +  10730278 AGAAAAAGTCCTCCTTTTGATGCAG-----
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              20302937 23 -  24206276 -------ACCCTCCTCTTGGTGCACAGCTC
i chlSab2.chr29             C 0 C 0
s cebCap1.NW_016107979v1        18743 30 -   1024465 ACAAAAAAATCTCTTCTTGGTGCACAGCTC
i cebCap1.NW_016107979v1    C 0 C 0
e colAng1.NW_012114844v1      4055336 45 +   5013933 I
e manLeu1.NW_012102632v1      3949546 46 +   4030761 I
e macNem1.NW_012011533v1      3944165 42 +   4820037 I

a score=119156.000000
s hg38.chr15_KI270850v1_alt     55580 27 +    430880 CTCCTCTCAGGCTTCCCAAACTTGGCC
s panPan2.chr15              23090989 24 -  99763055 CTC---TCAGGCTTCCCAAACTTGGCC
i panPan2.chr15             C 0 I 3313
s gorGor5.CYUI01015946v1       347611 27 -    378907 CTCCTCTCAGGCTTCCCAAACTTGGCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732599 24 - 121039945 CTC---TCAGGCTTCCCAAACTTGGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60021097 24 + 169600520 ---CTCTCAGGCTTTCCAAACTTGGCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106459487 24 - 171882078 ---CTCTCAGGCTCTGCAAACTTGGCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3944207 27 +   4820037 CTCCTCTCAGGCTTCAGAAACTTGGCC
i macNem1.NW_012011533v1    I 42 C 0
s cerAty1.NW_011999477v1      9877179 27 +  10730278 CTCCTCTCAGGCTTCCCAAACCTGGCC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              20302960 24 -  24206276 ---CTCTCAGGCTCTGCAAACTTGGCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3949592 27 +   4030761 CTCCTCTCAGGCTTCAGAAACTCGGCC
i manLeu1.NW_012102632v1    I 46 C 0
s colAng1.NW_012114844v1      4055381 27 +   5013933 CTCCTCTCAGGCTTCCCAAACTTGGCC
i colAng1.NW_012114844v1    I 45 C 0
s cebCap1.NW_016107979v1        18773 24 -   1024465 ---CTCTCAGGCTCCCCAAACCTGGCC
i cebCap1.NW_016107979v1    C 0 C 0

a score=1150194.000000
s hg38.chr15_KI270850v1_alt     55607 280 +    430880 TCACTGCTAATGACTCCTCACACCCGGATGGTAGACAATCTTCCAAGTCACTTTCAGATAGAGAGCACTGTGGGTGGCTGACAATGGGCACTCctccctctttactgatggggacact-gaggctcatggagatgacaagacttgtccTCCCCTGGCACAGACCTCTTTCCCTCTGCCTCAAAGCCCTTCCATCCACCCACCTCCCTGGGGCATTCTAAGTCACCCCCACAGCCCTCTAATGCCAGTCCAGCTGCCAGGTCATGCCAGCCCCATCTTACCC
s gorGor5.CYUI01015946v1       347638 280 -    378907 TCACTGCTAATGACTCCTCACACCCGGATGGCAGCCAATCTTCCAAGTCACTTTCAGATAGAGAGCACTGTGGGTGGCTGACAATGGGCACTCctccctctttactgatggggacact-gaggctcatggagatgacaagacttgtccTCCCCTGGCACAGACCTCTTTCCCTCTGCCTCAAAGCCCTTCCATCCACCCACCTCCCTGGGGCATTCTAAGTCACCCCCACAGCCCTCTAATGCCAGTCCTGCTGCCAGGTCATGCCAGCCCCATCTTACCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732623 277 - 121039945 TCACTGCTAATGATTCCTTGCACCC-GATGGTAGCCAAT-TTCCAAGCCACTTTCACATAGAGAGCACTGTGGGTGGCTGACAACGGACACCCCTCCCTCTTTGCTGATGGGGACCCT-GAGGCT-ATGGAGATGACAAAACTTGCCGTCTTCTGGCACAGACCTCTTTCCCTCTGCCTCAAAGCCCTTACATCCACCCACCTCCCTGGGGCATTCTAAGCCACCCCCACAGACCTCTGATGCCACTCCTGCTCCCAGGTCACACCAGCCCCATCTTACCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60021121 278 + 169600520 TCACTGCTAATGATTCCTTGAACCT-GATGGTAGCCAAT-TGCCAAGTCACTTTCAGATAGAGAGCACTATGGGTGGCTGACAACGGGcactcctccctctttgctgatggggaccct-gaggctcatggagatgacaaaacttgctgtctcctggcaCAGACCTCTTTCCCTCTGCCTCAAAGCCCTTCCATCCACCCATCTCCCTGGGGCATTCTAAGCCACCCCCACAGTCCTCTGATGCCGGTCCTCCTCCCACGTCACACCAGCCCCATCTTACCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106459511 278 - 171882078 TCCCTGCTAATGATTCCTTGTACCC-GATGGTAGCCTATCTTCCAAGCCCCTTTCAGATAGAGAGCACTGTGGGT-GCTGACAATCGGCACTCctccctctttgttgatggggacact-gaggctcatggagatgacaagacttgccATCTCCTGGCACAGACCTCTTTCCCTCTGCCTCAAAGCCCTTCCATGCACCCACCTCCCTGGGGCATTCTAAGCGACCCCCACAGCCCTCCGATGCCAGTCCTGCTTTGAGGTCACCCCAGCCCCAGCTCACCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3944234 276 +   4820037 TCACTGCTAATGATTCGTCACACCC-GATGGTAGCCAATTTCCCAG--CCATGTCAGATAAAGAGCACTGTGGATGGCTGGCAATGGGcactcctctctctttgctgatggggaccct-gaggctcatggagatgacaaggcttgcTGGCTGCTGACACAGACCACTTTCCCTCTGCCTCAAAGCCCTTCCATCCACCCACTTCCCTGGGGCATTCTAAGCCA-CCCCACAGCCTTCTGATGCCAGTCCTGCTGCCAGGTCACACTAGCCCCATCTTACCC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9877206 277 +  10730278 TCCCTGCTAATGATTCCTGGCACCC-GATGGTAGCCAAT-TTCCAAG-CCATGTCAGATAGAGAGCACTGTGGGTGGCTGACAATGGGCACTCCTTCCTCTTGGCTGACGGGGACCCTAAAGGCTCATGGAGATGACAAGGCTTGCTGGCTGCTGACACAGACCACTTTCCCGCTGCCTCAATGCCCTTCCATTCACCCACCTCCCTGGGGCATTCTAAGCCA-CCCCACAGCCCTCTGATGCCAGTCCTGCTCCCAGGTCACACTAGTCCCATCTTACCC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              20302984 279 -  24206276 TCCCTGCTAATGATTCCTTGTACCC-GATGGTAGCCAATCTTCCAAGCCCCTTTCAGATAGAGAGCACTGTGGGTGGCTGACAATCGGCACTCctccctctttgttgatagggacact-gaggctcatggagatgacaagacttgccgtctcctggcaCAGACCTCTTTCCCTCTGCCTCAAAGTCCTTCCATGTACCCACCTCCCTGGGGCACTCTAAGCGACCCCCACAGCCCTCCGATGCCAGTCCTGCTTTGAGGTCACCCCAGCCCCAGCTCACCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3949619 276 +   4030761 TCACTGCTAATGATTCCTCGCACCC-AACGGTAGCCAAT-TTCCAAG-CCATGTCACATAGAGAGCACTGTGGGTGGCTGACAATGGGCACTCCTCTCTCTTGGCTGATGGGGACCCT-GAGGCTCATGGAGATGACAAGGCTTGCTGGCTGCTGACACAGACCATTTTCCCTCTGCCTCAAAGCCCTTCCATCCACCCACCTCTCTGGGGCATTCTAAGCCA-CCCCACAGCCCTCTGATGCCAGTCCTGCTCCCAGGTCACACCAGCCCCATCTTACCC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4055408 276 +   5013933 TCACTGCTAATGATTCCTTGCACCC-AATGGTAGCCAAT-TTCCAAG-CCATGTCAGATAGAGAGCACTGTGGGTGGCTGACAATGGGCACTCCTCCCTCTTGGCTGACAGGGACCCT-GAGGCTCATGGAGATGACAAGACTTGCCAGCTGCTGGCACAGACCTCTTTACCTCTGCCTCAAATCCCTTCCATCCACCCATCTCCCTGGGGCATTCTAAGCCA-CCCCACAGTCCTCTGATGCCAGTCCTGCTCCCAGGTCACACCAGCCCTATCTTACCC
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1        18797 279 -   1024465 TCACTGCTAATGATTCCTCACACCAAAATGGTAGCCAGTCTTCCAAGCCACTTTCACATAGAGAGCACTGTGGGTGGCTGACAACAGGCACCCctccctcttt-ctgatggggacact-gaggctcatggagattacaagacttgccgtctcctagcaCAGACCTCTTTCCCTCTGCCTCAAAGCCCTTCCAGCCACCCACCTCCCTGGGGCACTCTAAGCCACCCCCACAGCCATCTGATGCCAGTCCTGCTCCCTGGTCACGCCAGCCCCATCTTACCC
i cebCap1.NW_016107979v1    C 0 I 86
e panPan2.chr15              23091013 3313 -  99763055 I

a score=268425.000000
s hg38.chr15_KI270850v1_alt     55887 86 +    430880 GTCTGGTTTTTGAGTTTGAACAAGCTCCTCCCAAGCTTCTGTACCAGATGTATCTCATGCTTCTTCTCCTCCTTAGATGTGCGAAC
s gorGor5.CYUI01015946v1       347918 86 -    378907 GTCTGGTTTTTGAATTTGAACAAGCTCCTCCCAAGCTTCTGTACCCGATGTATCTCATGCTTCTTCTCCTCCTTAGATGTGCGAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732900 86 - 121039945 ATCTGGTTTTGGAGTTGGGACAAGCTCCTCTCCAGCTCCTCTATCCGATGTATGTCACGTTTCTTCTCCTCCTTCAATGTAAGAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60021399 86 + 169600520 ATCTGGGGTTTGAGTTCGGACAAGCTCCTCTCCAGCTCCTGTATCTGATGTATGTCACGCTTCTTCTCTTCCTTCAATGTGCAAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106459789 86 - 171882078 ATCTGGTTCTTCAGTTTGGTCAAGCTTGTCTCCAGCTCCTGTACCTGATGCAGGTCATGCTTCTTCTCCTCCTTCAATGTGCAAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3944510 86 +   4820037 ATCTGGTTTTTGAGTTCAGACAAGCTCCTCTCCAGCTCCTGTATCTGATGTATGTCACACTTCTTCTCCTCCTTCAATGTGCGAGC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9877483 86 +  10730278 ATCTGGTGTTTGAGTTCGGATAAGCTCCTCTCCAGCTCCTGTATCCGATGTATGTCACGTTTCTTCTCCTCCTTCAATGCATGAGC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              20303263 86 -  24206276 ATCTGGTTCTTCAGTTTGGCCAAGCTTGTCTCCAGCTCCTGTACCTGATGCAGGTCATGCTTCTTCTCCTCCTTCAATGTGCAAAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3949895 86 +   4030761 ATCTGGGGTTTGCGTTCGGACAAGCTCCTCTCCAGCTCCTGTATCCGATGTATGTCACGCTTCTTCTCCTCCTTCAATGCGTGAGC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4055684 86 +   5013933 ATCTGGTGTTTGATTTCGGACAAGCTCCTCTCCAGCTCCTGTATCCAATGTGTGTGATGCTTCTTCTCCTCCCTCAATGCGTGAGC
i colAng1.NW_012114844v1    C 0 C 0
e cebCap1.NW_016107979v1        19076 86 -   1024465 I
e panPan2.chr15              23091013 3313 -  99763055 I

a score=208751.000000
s hg38.chr15_KI270850v1_alt     55973 46 +    430880 CTGCCCAAAGCAAAGGGGGAAAAGGGCCCTGGAGGG-AGGGGCTGGT
s gorGor5.CYUI01015946v1       348004 46 -    378907 CTGCCCAAAGCAAAGGGGGAAAAGGGCCCTGGAGGG-AGGGGCTGAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22732986 44 - 121039945 CTGCCCAAAGCACAGGGG--AAAGGGCCCTGGAGAG-AGGGGCTGGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60021485 45 + 169600520 CTGCCCAAAGCACAGAGGG-GAAGGGCCCTGGAGAG-AGGGGCTGGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106459875 46 - 171882078 CTGCCCAAAGCACAGGGGG-AAAGGGCCCTGGAGAAGAGGGGCTGGT
i macFas5.chr7              C 0 I 3474
s macNem1.NW_012011533v1      3944596 45 +   4820037 CTGCCCAAAGCACAGGGGG-AAAGGGCCCTGGAGAA-AGGAGCTGGT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9877569 45 +  10730278 CTGCCCAAAGCACAGGAGG-AAAGGGCCCTGGAGAG-AGGGGCTGGT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              20303349 45 -  24206276 CTGCCCAAAGCACAGGGGG-AAAGGGCCCTGGAGAG-AGGGGCTGGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3949981 45 +   4030761 CTGCCCAAAGCACAGGGGG-AAAGGGCCCTGGAGAG-AGGGGCTGGT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4055770 45 +   5013933 CTGCCCAAAGCACAGGGGG-AAAGGGCCCTGGAGAG-AGGGGCTGGT
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1        19162 45 -   1024465 CTGCCCAAAGCACAGGGGG-AAAGGGCCCTGGAGAG-AGGGGCTGGT
i cebCap1.NW_016107979v1    I 86 C 0
e panPan2.chr15              23091013 3313 -  99763055 I

a score=4500.000000
s hg38.chr15_KI270850v1_alt     56019 1 +    430880 G
s gorGor5.CYUI01015946v1       348050 1 -    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22733030 1 - 121039945 G
i nomLeu3.chr6              C 0 I 2442
s rheMac8.chr7               60021530 1 + 169600520 G
i rheMac8.chr7              C 0 I 2489
s macNem1.NW_012011533v1      3944641 1 +   4820037 G
i macNem1.NW_012011533v1    C 0 I 2498
s cerAty1.NW_011999477v1      9877614 1 +  10730278 G
i cerAty1.NW_011999477v1    C 0 I 2458
s chlSab2.chr29              20303394 1 -  24206276 G
i chlSab2.chr29             C 0 I 3929
s manLeu1.NW_012102632v1      3950026 1 +   4030761 G
i manLeu1.NW_012102632v1    C 0 I 2478
s colAng1.NW_012114844v1      4055815 1 +   5013933 G
i colAng1.NW_012114844v1    C 0 I 2624
s cebCap1.NW_016107979v1        19207 1 -   1024465 G
i cebCap1.NW_016107979v1    C 0 I 1322
e panPan2.chr15              23091013 3313 -  99763055 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=1298.000000
s hg38.chr15_KI270850v1_alt     56020 7 +    430880 AACGTCC
s gorGor5.CYUI01015946v1       348051 7 -    378907 AACCTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22735473 7 - 121039945 AACCTCT
i nomLeu3.chr6              I 2442 C 0
e cebCap1.NW_016107979v1        19208 1322 -   1024465 I
e panPan2.chr15              23091013 3313 -  99763055 I
e colAng1.NW_012114844v1      4055816 2624 +   5013933 I
e manLeu1.NW_012102632v1      3950027 2478 +   4030761 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e cerAty1.NW_011999477v1      9877615 2458 +  10730278 I
e macNem1.NW_012011533v1      3944642 2498 +   4820037 I
e macFas5.chr7              106459921 3474 - 171882078 I
e rheMac8.chr7               60021531 2489 + 169600520 I

a score=2820.000000
s hg38.chr15_KI270850v1_alt     56027 3 +    430880 AGA
s gorGor5.CYUI01015946v1       348058 3 -    378907 AGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22735480 3 - 121039945 AGA
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011533v1      3947140 3 +   4820037 AGA
i macNem1.NW_012011533v1    I 2498 C 0
s manLeu1.NW_012102632v1      3952505 3 +   4030761 AGA
i manLeu1.NW_012102632v1    I 2478 C 0
e cebCap1.NW_016107979v1        19208 1322 -   1024465 I
e panPan2.chr15              23091013 3313 -  99763055 I
e colAng1.NW_012114844v1      4055816 2624 +   5013933 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e cerAty1.NW_011999477v1      9877615 2458 +  10730278 I
e macFas5.chr7              106459921 3474 - 171882078 I
e rheMac8.chr7               60021531 2489 + 169600520 I

a score=4808.000000
s hg38.chr15_KI270850v1_alt     56030 4 +    430880 GACA
s gorGor5.CYUI01015946v1       348061 4 -    378907 GACA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22735483 4 - 121039945 GACG
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011533v1      3947143 4 +   4820037 GACG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9880073 4 +  10730278 GACG
i cerAty1.NW_011999477v1    I 2458 C 0
s manLeu1.NW_012102632v1      3952508 4 +   4030761 GACG
i manLeu1.NW_012102632v1    C 0 C 0
e cebCap1.NW_016107979v1        19208 1322 -   1024465 I
e panPan2.chr15              23091013 3313 -  99763055 I
e colAng1.NW_012114844v1      4055816 2624 +   5013933 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I
e rheMac8.chr7               60021531 2489 + 169600520 I

a score=10180.000000
s hg38.chr15_KI270850v1_alt     56034 7 +    430880 GAGTTTG
s gorGor5.CYUI01015946v1       348065 7 -    378907 GAGTTTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22735487 7 - 121039945 GAGACTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60024020 7 + 169600520 GAGTCTG
i rheMac8.chr7              I 2489 C 0
s macNem1.NW_012011533v1      3947147 7 +   4820037 GAGTCTG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9880077 7 +  10730278 GAGTCTG
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3952512 7 +   4030761 GAGTCTG
i manLeu1.NW_012102632v1    C 0 C 0
e cebCap1.NW_016107979v1        19208 1322 -   1024465 I
e panPan2.chr15              23091013 3313 -  99763055 I
e colAng1.NW_012114844v1      4055816 2624 +   5013933 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=18656.000000
s hg38.chr15_KI270850v1_alt     56041 14 +    430880 AGAAAGG-CCCACCC
s panPan2.chr15              23094326 14 -  99763055 AGAAAGG-CCCACCC
i panPan2.chr15             I 3313 C 0
s gorGor5.CYUI01015946v1       348072 14 -    378907 AGAAAGG-CCCACCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22735494 14 - 121039945 AGAAAGA-CCCACCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60024027 11 + 169600520 AGAAAGG-CCCA---
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3947154 11 +   4820037 AGAAAGG-CCCA---
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9880084 11 +  10730278 AGAAAGG-TCCA---
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3952519 12 +   4030761 AGAAAGGCCCCA---
i manLeu1.NW_012102632v1    C 0 C 0
e cebCap1.NW_016107979v1        19208 1322 -   1024465 I
e colAng1.NW_012114844v1      4055816 2624 +   5013933 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=1385760.000000
s hg38.chr15_KI270850v1_alt     56055 516 +    430880 CCCTTCTGCCAGTTTGTGATTTAGAAACGTGcattcattcaacaaacatttactgagcatgtacaggccaggtacagttcttcatagcagagatataaaacagcaaaggacagacaggagcccttggccctgaggtttccattctaggggCCTTTAaatctctgactttcagagctaaccaagacctttgatactctctacctcctccagaaacacgagcataaagaggagagatggcttgtccagactcaaaaagcaaattagggactgaggcagggcagaaatatgga-cccctgacaaccagtcAGGCTAGTGCTTCCCAGAGAGGTGACAACCCCAGGGCATGTGTGGCAAGGACTAGAGCAGGGGTGTCTGGAGAAGAGAGAGTCAGCAAAGAGGGCAGTG-CAGAAGACCCATGCTGCATGTTCTGTGCTCTGGGGTCCCTCCAGGTGAGACCTGGGTGC-CCAGCTCCCCATTTGCCCTTGGCATCAGGGGCCCCTAGCTCCTTTCTTCAGG
s panPan2.chr15              23094340 510 -  99763055 ---TTCTGCCTGCTTGTGATTTAGAAAGGTGCCttcattccacaaacagttactgagcacatacaggacaggtatggttcttcacagcagg--tataggatggaataggatagacaggagcccttggccctgaggtttccattctaggggCCTTTTaatcttggactttcagagctgacagagacctttgatgctcc--acctcctccagaaacaggagcccaaggaggacaggtggcttttccagactcaaa--gcaaattagggactgagtcagggcataaatatggggcccctgacaaccagtcAGGCTAGCGCTTCCCTGAGATTTGACAACCCCAGGGCGTGTGTGGCAAGGACTGGAGCAGGGGTGTCTGGAGAAGAGAGAGTTGGCAAAGAGGGCAGTGACAGAAGAGCCATGCTGCATGCTCCTTGCTCTGGGATCCCTCCAGGTGAGGCCTGGGTGCTCCAGCTCCCCATTTGTCCTTGACACCAGGGGCCCCCAGCTCCTTTCTTCAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       348086 509 -    378907 -CCTTCTGCCAGTTTGTGATTTAGAAACGTGcattcattcaacaaacatttactgagcatgtacaggccaggtacagttcttcatagcagagatataaaacagcaaaggacagacaggagcccttggccctgaggtttccattctaggggCCTTTAaatctctgactttcagagctaactgagacctttgatactctctacctcctccagaaacacgagcataaagaggagagatggcttgtccagactcaaaaagcaaattagggactgaggca-ggcagaaatatgga-cccctgacaaccagtcAGGCTAGTGCTTCCCGGAGAGGTGACAACCCCAGGGCATGTGTGGCAAGGACTAGAGCAGGGGTGTCTGGAGAAGAGAGAGTCAGCAAAGA-GGCAGTA-CAGAAGAGCCATGCTGCATGTTCTGTGCTCTGGGGTCCCTCCAGGTGAGACCT-GGTGC-CCAGCTCCCCATTTGCCTT--GCATCAGGGGCCCCTAGC-CCTTTCTTCAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22735508 510 - 121039945 ---TTCTGCCAGCTTGTGATTTAGAAAGGTGCCttcattccacaaacagttactgagcacatacaggacaattatggttcttcacagcaga--tataggatggaaaaggacagacaggagcccttggccctcaggtttccattctagaggCCTTTAaatctcggactttcagagctaacagagacctttgatgctct--acctcctccagaaacacgagcccaaggaggagaggtggcttgtccagactcaaagaggaaattagggacggagtcagggcagaaatatggggcccctggcaaccagtcAGGCTAGTGCTTCCCTGAGAGGTGACAACCCCAGGGCATGTGTGGCAATGATTGGAGT-GGGGTGTCTGGAGAAGAGAGAGTTGGCAAAGAGGGCAGCGACAGAAGAGCCATGCTGCATGCTCCTTGCTCTGGGGTCCCTCCAGGTGAGGCCTGGGTGCTCCAGCTCCCCATGTGTCCTTGGCATCAGGGGGCCC-AACTCCTTTCTTCAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60024038 515 + 169600520 CCCATCTGCCAGCTTGTGATTTAGAAAGGTGcgttcattcaacagacatttactgagcacatatgggccaggtatggttctccacagcaga--tataggatggaaaaggacagataggagcccttgaccgtgaggtttccattctaggggCCTTTAaatctcagactctcagagctaacagagacctttgatgccat--acctccccgcgaaacacaagcccaaggagaagaggtggcttgtacagaatcaaagagcaaattagggacagagtcagagcagaaattcggggcccttgacaatgagtcaggctagtgctTCCCTGACAGGTGACAACCCCAGTGTGTGTGTGAAAAGGACTAGAGCAGGGGTATCTGGAGGAGAGAGAGTTGGCAAAAAGGGCAGTGACAGAAGAGCCATGCTGCATGCTCCTTGTTCTGGGGTCTCTCCAGGTGAGGCCTGGGTGCTCCAGCTCCCCATTTGCCCTTGGCACCAGGGGCCCCCAGCCCTTTTCTTTAGG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3947165 513 +   4820037 CCCTTCTGCCAGCTTGTGATTGAGAAAGGTGcgttcattcaacaaacatttactgagcacgtacaagccaggtacagttcttcacagcaga--tataggacagaaaaggacagacaggagcccttggccctgaggtttccattctaagggCCTTTAaatctctgactttcagagctaacagaga-ttttgatgctct--atctcctctggaaacaggagcccaaggaggaaaggtggcttgtccagactcaaagagcaaattagggactgagtcatggcagaaatacagggcccttgacaaaccatcaggctagtgctTCCCTGAGAGGAGAAAACCCCAGGGCGTGTGTGGCAAGGACTGGAGCAGGGGTGTCTGGAGAAGAGAGAGTCGGCAAAGAGGGCAGTGACAGAAGAGCCATGCTGCATGCTCCTTGCTCTGGGGTCCCTCTAGGTGAGGCCTGGGTGCTCCAGCTCCCCATTTGCCCTTGGCACCAGGGG-CCCCAGCCCCTTTCTTCAGA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9880095 515 +  10730278 CCCTTCTGCCAGCTTGTGATTGAGAAAGGTGcattcattcaacaaacatttactgagcacatacgagccaggtacagttcttcacagcaga--tataaaatggaaaaggacagacaggagcccttggccctcaggtttccattctagGAGCCTTTAaatctcagactctcagagctaaccgagaccttcactgctct--acctccttcggaaacactagcccaaagaggagaggtagcttgtccagactcaaagagcaaattaggaactgagtcatggcagaaatatgggacccctgacAAACCATCAGGTTAGCGCTTCCCTGAGAAGTGACAACCCCAGGGCGTGTGTGGCAAGGACTGGAGCAGGGGTGTCTGGAGAAGAGAGAGTCGGCAAAGAGGGCAGTGACAGAAGAGCCATGCTGCATGCTCCTTGCTCTGGGGTCCCTCCAGGTGAGGCCTGGGTGCTCCAGCGCCCCATTTGCCATTGGCATCAGGGGCCCCCAACCCCTTTCTTCGGA
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3952531 512 +   4030761 CCCTTCTGCCAGCTTGTGATTGAGAAAGGTGcgttcattcaacaaacatttactgagcacgtacaagccaggtacagttcttcacagcaga--tataggacagaaaagaacagacaggagcccttggccctgaggtttccattctaagggCCTTTAaatctcagactttcagagctaacagaga-ttttgatgctct--acctcctctggaaacaggagcccaaggaggagaggtggcttgtccagactcaaagagcaaattagggactgagtcatggtagaaatacaggacccctgacaaaccatcaggctagtgctTCCCTGAGAGGAGAAAACCCCAGGGCGTGTGTGGCAAGGACCGGAGCAGGGGTGTCTGGAGAAGAGAGAGTCAACAAAGAGGGCAGTGACAGAAGAGCCATGCTGCATGCTCCTTGCTCTGGGGTCCCTCCAGGTGAGGCCTGGGTGCTCCAGGTCCCCATTTGCCCTTGGCACCAGGGG-CTCCAACCCC-TTCTTCAGA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4058440 513 +   5013933 CCCTTCTGCCAGCTTGTGATTGAGAAAGGTGcattcattcaacaaacatttgctgagcacatacaagccaggtacagttcttcacagcaga--tatagaatgggaaaggacagacaggagcccttggccctca-gtttacattctagGAGCCTTTAaatctcagactctcagagctcaccgagacctttgatgctct--acctccttcggaaacaccagcgcaaggaggagaggtggcttgtccagactcaaagagcaaattagggactgagtcatggcagaaatacagggcctctgacAAACCGTCAGGCTAGTGCTTCCCTGAGAGGTGACAACCCCAGGGCATGTGTGGCAAGGACTGGAGTATGGGTGTCTGGAGAAGAGAGAGTCAGCAAAGAGGGCAGTGACAGAACAGCCATGCTGTGTGCTCCTTGTTCTGGGGCCCCTCCAGGTGAGGCCTGGGTGCTCCAGCTCCCCATTTGCCTTTGGCACCAGGGG-ACCCAGCCCCTTTCTTCAGA
i colAng1.NW_012114844v1    I 2624 C 0
e cebCap1.NW_016107979v1        19208 1322 -   1024465 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=222754.000000
s hg38.chr15_KI270850v1_alt     56571 68 +    430880 GCCCCAAGAGGAAACTGGAGTCCAGGATTGACCAGC-TGTAATCAGGGGACCCCACTGGACTCTTACCA
s panPan2.chr15              23094850 67 -  99763055 GCCCCAAGGGGAA-CTAAAGCCCAGGATTGGC-AGCATGGAATCACAGGACCCCACTGGACTCTTACCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       348595 68 -    378907 GCCCCAAGAGGAAACTGGAGTCCAGGATTGACCAGC-TGTAATCAGGGGACCCCACTGGACTCTTACCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22736018 67 - 121039945 GCCCCAAGGGGAA-CTAAAGCCCAGGATTGGC-AGCGTGGAATCACGGGACCCCACTGGACTCTTATCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60024553 68 + 169600520 GCCCCATGGGGAAACGAAAGCCTAGGACTGGC-AGCATGGAATCAGGGGACCCCACTGGACTCTTACCA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3947678 68 +   4820037 GCCCCAACGGGAAACTAAAGCCCAGGATTGGC-AGCATGGAATCACAGGACCCCAGTGGACTCTTACCA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9880610 68 +  10730278 GCCCCAAGGGGAAAGTAAAGCCCAGGATTGGC-AGCGTGGAATCACAGGACCCCACTGAACTCTTACCA
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3953043 68 +   4030761 GCCCCAAGGGGAAAGTAAAGCCCAGGATTGGC-AGCGTGGAATCACAGGACCCCACTGAACTCTTACCA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4058953 68 +   5013933 GCCCCAAGGGGAAACTAAAGCCCAGGATTGGC-AGCGTGGAATCACAGGACTGCACTGGACTTTTACCA
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1        20530 68 -   1024465 GCCCCAAGGGGAAACTGGAACCCAGGATTGGC-AGCGTGGAATCAGGGGACCCCACTGGACTCTTACCA
i cebCap1.NW_016107979v1    I 1322 I 73
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=191456.000000
s hg38.chr15_KI270850v1_alt     56639 76 +    430880 GTGAATTGATGTTTTCAGTGAGTTGACTGATTATTGCGGAGCTTGAATCCAGGGCCACTGCTAGTTCTTGGTACTG
s panPan2.chr15              23094917 76 -  99763055 ATGATTCTATGTTTTCATTTAGTTGATTGACTGTCATGGAGCTTGAGTCCAGGGCTACTTCCAGTTCTTGGTACCG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       348663 75 -    378907 GTGAATTGACGTTTTCAGTGAGTTGACTGATTATTGCGGAGCTTGAATCCAGGGCCACTGCTAGTTCTT-GTACTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22736085 76 - 121039945 ATGATTCTATGTTTTCATTTAGTTCATTGATTGTTGTGTAGCTTGACTGTAGGGCTACTTCCAGTTCTTGGTACCG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60024621 76 + 169600520 ATGATTCTATGTTTTCATTGAGGTGATTGATTGTTGTGGAGCTTGACTCCAGAGCTACTGCTAGTTCTTGGTACCG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3947746 76 +   4820037 GTGATTCTATGTTTTCACTGAGTTGATTGATTGTTGTGGAGCTTGAGTCCAGGGCTACTTCCAGTTCTTGGTTCCG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9880678 76 +  10730278 ATGATTCTATGTTTTCACAGAGTTGATTGATTGTTGCGGAGCTTGAGTCCAGGGCTACTGCTTGTTCTTGGTTCTG
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3953111 76 +   4030761 ATGATTCTATGTTTTCACAGAGTTGATTGATTGTTGCGGAGCTTGAGTCCAGGGCTACTTTCAGTTCTTGGTTCCA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4059021 76 +   5013933 ATGATTCTATGTTTTCATAGAGTTGATTGATTGTTGTGGAGCTTGAGTCCAGGGCTACTTCCAGTTCTTGGTTCTG
i colAng1.NW_012114844v1    C 0 C 0
e cebCap1.NW_016107979v1        20598 73 -   1024465 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=677106.000000
s hg38.chr15_KI270850v1_alt     56715 204 +    430880 GCTCTGAGGTGCATGCAGAGAGAAGGAGTTGGAGGAAGATTGTGGCGAGGGGTAGAGAGAATAATCATTAGGGCTGGTGG--GGGTGTGTGGGCTGCC--------TCAGCTGGCAGAGGGGCAACAAGCCCCTGCT-GTGGGAGGAGGTTGGAGGGCTGGCCTGCAGGGTCACTGCACCTCGGCCCAGGGCCTCTTACCTCCAGATCCTGCAGG
s panPan2.chr15              23094993 210 -  99763055 ACTCTGAGGCGCATGCAGAGAGGAGGAGTTGGAGGAGGATTGTGGGGAGAGGTAAAGAGAACAATCATTAGGGCTGG--G--GTGTGTGTGGGCTGTCGGGCTGTGTCAGCTGGCAGAGGGGCACCCAGCCCCTGCT-GTGAAAGGAGGTTGGAGGGCTGGCCTGCAGAATCACTGCACCTCAGCCCAGGGCATCTTACTTCCAGATCCTTCAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       348738 194 -    378907 GCTCTGAGGTGCATGCAGAGAGAAGGAGTTGGAGGAAGATTGTGGGGAGGGGTAGAGAGAATAATCATTAGGGCTGGTGG--GGGTGTGTGGGCTGCC--------TCAGCTGGCAGA-GGGCAACAAGCCCCTGCT-GCGGGAGGAGGTTGGAGGGCTGGCCTGCAGGGTCACTGCACCTCGGCCCTGGGC---------CGAGATCCTCCAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22736161 200 - 121039945 GCTCTGAGACACATGCAGAGAGGAGGAGTTGGAGAAGGATTGTGGGGAGAGGTAAAGAGAACCATCATTAGGGCTGG--G--GTGTGTGTGGGCTGTCAGGCTGTCTCAGCTGGCAGA----------GCCCCTGCT-GTGAGAGGAGGTTGGAGGGCTGGCCTGCAGGGTCACTGCACCTTGGCCCAAGGCCTCTTACCTCCAGATCCTTCAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60024697 203 + 169600520 GCTCTGAGGCGCATGCCAAGAAGATGAGTTGGAGGAGGATTGCAGGGAGAGGTAGAGAGAACAACCATTAGGGCTGG--G--GTGTATGTGAGCTGTC--------TCAGCTGGCAGAGGGTCACCCAGCCCCTGCTGGTGAGAGAAGGTTGGAGGGCTGGCCTGTAGTGTCACTGCACCTTGGCCTAGGGCCCCTTACCTCCAGATCCTTCAGG
i rheMac8.chr7              C 0 I 1269
s macNem1.NW_012011533v1      3947822 204 +   4820037 GCTCTGAGGCGCATGCAGAGAGGAGGAGTTGGAGGAGGATTGTGGGAAGAGGTAGAGAGAACAATCATTAGGGCTGG--GGTGTGTGTGTGGGCTGTC--------TCAGCTGGCAGAGGGGCACCCAGCCCCCACT-GTGAGAGGAGGTTGGAGGGCTGGCCTGCAGGGTCACTGCACGTCAGCCCAGGGCTTCTTACTTCCAGATCCTTCAGG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9880754 202 +  10730278 GCTCTGAGGCACACGCAGAGAGCAGGAGTTGGAGGAGGATTATGGGAAGAGGTAGAGAGAACAATCATTAGGGCTGG--G--GTGTGTGTGGGCTGTC--------TCAGCTGGCAGAGGGGCACCCAGCCCCCACT-GTGAGAGGAGGTTGGAGGGCTGGCCTGCAGGGTCACTGCACCTTGGCCCAGGGCCTCTTACTTCCAGATCCTTCAGA
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3953187 202 +   4030761 GCTCTGAGGCGCATGCAGAGAGGAGGAGTTGGAGGAGGATTGTGGGAGGAGGTACAGAGAACAATCATTCGGGCTGG--G--GTGTGTGTGGGCTGTC--------TCAGCTGGCAGAGGGGCACCCAGCCCCCACT-GTGAGAGGAGGTTGGAGGGCTGGCCTGCAGGGTCACTGCACGTCAGCCCAGGGCCTCTTACTTTCAGATCCTTCAGG
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4059097 202 +   5013933 GCTCTGAGGCGCATGCAGGGAGGAGGAGTTGGAGGAGGATTGTGGGAAGAGGTAGAGAGAACAATCATTAGGGCTGG--G--GTATGTGTGGGCTGTC--------TCAGCTGGCAGAGGGGCACCCAGCCCCCACT-GTGAGAGGAGGTTGGAGGGCTGTCCTGCAGGGTCACTGCACCTTGGCTCAGGGCCTCTTACCTCCAGATCGTTCAGG
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1        20671 200 -   1024465 GCTCTGAGGCACCTGCAGAGAGGAGGAGTTGG-GGAGGATCG-GGGGAGAGGTAGAGAGAACAATCATTAGGGTTGG--G--GTGTGTGGGGGTTGTC--------TCGGCTGGCAGAGGGGCACCCAGCTGCCACT-GTGGGAGGAGGGTGGAGGGCTGGCCTGCAGGGTCACCGTACCTCAGCTCAGGGCCTCTTACCTCTGGATCTTTCATG
i cebCap1.NW_016107979v1    I 73 C 0
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=9176.000000
s hg38.chr15_KI270850v1_alt     56919 3 +    430880 GTA
s panPan2.chr15              23095203 3 -  99763055 GTA
i panPan2.chr15             C 0 I 1257
s gorGor5.CYUI01015946v1       348932 3 -    378907 GTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22736361 3 - 121039945 GTA
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011533v1      3948026 3 +   4820037 GTA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9880956 3 +  10730278 GTA
i cerAty1.NW_011999477v1    C 0 I 1305
s manLeu1.NW_012102632v1      3953389 3 +   4030761 GTA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4059299 3 +   5013933 GTA
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1        20871 3 -   1024465 GTG
i cebCap1.NW_016107979v1    C 0 C 0
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I
e rheMac8.chr7               60024900 1269 + 169600520 I

a score=10995.000000
s hg38.chr15_KI270850v1_alt     56922 9 +    430880 GTAGAGGAT
s gorGor5.CYUI01015946v1       348935 9 -    378907 GCAGAGGAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22736364 9 - 121039945 ACAGATGAT
i nomLeu3.chr6              C 0 I 1278
s macNem1.NW_012011533v1      3948029 9 +   4820037 GCAGATGAT
i macNem1.NW_012011533v1    C 0 C 0
s manLeu1.NW_012102632v1      3953392 9 +   4030761 GTAGATGAT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4059302 9 +   5013933 GCAGATGAT
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1        20874 9 -   1024465 GCACATGGC
i cebCap1.NW_016107979v1    C 0 C 0
e panPan2.chr15              23095206 1257 -  99763055 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e cerAty1.NW_011999477v1      9880959 1305 +  10730278 I
e macFas5.chr7              106459921 3474 - 171882078 I
e rheMac8.chr7               60024900 1269 + 169600520 I

a score=4365.000000
s hg38.chr15_KI270850v1_alt     56931 3 +    430880 GCA
s gorGor5.CYUI01015946v1       348944 3 -    378907 GCA
i gorGor5.CYUI01015946v1    C 0 C 0
s macNem1.NW_012011533v1      3948038 3 +   4820037 GCA
i macNem1.NW_012011533v1    C 0 I 1352
s manLeu1.NW_012102632v1      3953401 3 +   4030761 GCA
i manLeu1.NW_012102632v1    C 0 I 1331
s colAng1.NW_012114844v1      4059311 3 +   5013933 GCA
i colAng1.NW_012114844v1    C 0 I 3186
s cebCap1.NW_016107979v1        20883 3 -   1024465 GCA
i cebCap1.NW_016107979v1    C 0 C 0
e panPan2.chr15              23095206 1257 -  99763055 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e cerAty1.NW_011999477v1      9880959 1305 +  10730278 I
e macFas5.chr7              106459921 3474 - 171882078 I
e rheMac8.chr7               60024900 1269 + 169600520 I
e nomLeu3.chr6               22736373 1278 - 121039945 I

a score=36992.000000
s hg38.chr15_KI270850v1_alt     56934 191 +    430880 CGGCCCTCCCCGTAGATACCTGTTGCTGACTGCAAGAGATGAGAGTGCACATGGAGATGTTCTGTCCCCCCTCACTGTCTAAGCCCTCTGACTTCCTTTCTTCCCCCATCAACTGGCAAAAGCTTCTTTTCTGCCTATCTTGGACCCTTTTCCCCATAACTCCTTTGTGCCAACTTCTCTCGTGGTTCTTA
s gorGor5.CYUI01015946v1       348947 189 -    378907 CGGCCCTCCCCGTAGATACCTGTTGCTGACTGCAGGAGATGAGAGTGCACATGGAGATGTTCTGTCCCCC-TCACTGTCTAAGCCCTCTGACTTCCTTTCTTCCCCCATCAACTGGCAAAAGCTTCTTTTCTGCCTATCTTGGACCCTTTTCCC-GTAACTCCTTTGTGCCAACTTCTCTCGTGGTTCTTA
i gorGor5.CYUI01015946v1    C 0 C 0
s cebCap1.NW_016107979v1        20886 185 -   1024465 GGGCCCTCCTTGGGACCACCTGCTGCTGACTACAAGAGATGAGAGTGCACATGGAGATGTTCTGTCCCC--TCAGTGTCCAAG-CCTCTGACTTCCTTTCCT-CCCCATCAGCTGGCAGCACTTCCTGTTCTGCC--TCCCGAACCAGTTGTCCCAGAACTCATCTGTGCCAGCTCCTCTCACGGTGCTTA
i cebCap1.NW_016107979v1    C 0 C 0
e panPan2.chr15              23095206 1257 -  99763055 I
e colAng1.NW_012114844v1      4059314 3186 +   5013933 I
e manLeu1.NW_012102632v1      3953404 1331 +   4030761 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e cerAty1.NW_011999477v1      9880959 1305 +  10730278 I
e macNem1.NW_012011533v1      3948041 1352 +   4820037 I
e macFas5.chr7              106459921 3474 - 171882078 I
e rheMac8.chr7               60024900 1269 + 169600520 I
e nomLeu3.chr6               22736373 1278 - 121039945 I

a score=3293.000000
s hg38.chr15_KI270850v1_alt     57125 14 +    430880 TCTCCCCACCATCC
s gorGor5.CYUI01015946v1       349136 14 -    378907 TCTCCCCACCATCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22737651 11 - 121039945 tctcctcaaca---
i nomLeu3.chr6              I 1278 C 0
s cebCap1.NW_016107979v1        21071 13 -   1024465 TCTCC-CACCATCC
i cebCap1.NW_016107979v1    C 0 C 0
e panPan2.chr15              23095206 1257 -  99763055 I
e colAng1.NW_012114844v1      4059314 3186 +   5013933 I
e manLeu1.NW_012102632v1      3953404 1331 +   4030761 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e cerAty1.NW_011999477v1      9880959 1305 +  10730278 I
e macNem1.NW_012011533v1      3948041 1352 +   4820037 I
e macFas5.chr7              106459921 3474 - 171882078 I
e rheMac8.chr7               60024900 1269 + 169600520 I

a score=4365.000000
s hg38.chr15_KI270850v1_alt     57139 3 +    430880 CAC
s panPan2.chr15              23096463 3 -  99763055 cac
i panPan2.chr15             I 1257 C 0
s gorGor5.CYUI01015946v1       349150 3 -    378907 CAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22737662 3 - 121039945 cac
i nomLeu3.chr6              C 0 C 0
s cerAty1.NW_011999477v1      9882264 3 +  10730278 cac
i cerAty1.NW_011999477v1    I 1305 C 0
s cebCap1.NW_016107979v1        21084 3 -   1024465 CAC
i cebCap1.NW_016107979v1    C 0 C 0
e colAng1.NW_012114844v1      4059314 3186 +   5013933 I
e manLeu1.NW_012102632v1      3953404 1331 +   4030761 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e macNem1.NW_012011533v1      3948041 1352 +   4820037 I
e macFas5.chr7              106459921 3474 - 171882078 I
e rheMac8.chr7               60024900 1269 + 169600520 I

a score=30126.000000
s hg38.chr15_KI270850v1_alt     57142 18 +    430880 CCTGGGGCCCTTTCAGTG
s panPan2.chr15              23096466 18 -  99763055 cctgggcccccttCAGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       349153 18 -    378907 CCTGGGGCCCTTTCAGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22737665 18 - 121039945 cctgGGCCCCCTTCAGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60026169 18 + 169600520 ccTGGGCCCCCTTCAGTG
i rheMac8.chr7              I 1269 C 0
s cerAty1.NW_011999477v1      9882267 18 +  10730278 cctgagaccccttctgTG
i cerAty1.NW_011999477v1    C 0 C 0
s cebCap1.NW_016107979v1        21087 18 -   1024465 CCTGGGGCCCTTTCAGTG
i cebCap1.NW_016107979v1    C 0 C 0
e colAng1.NW_012114844v1      4059314 3186 +   5013933 I
e manLeu1.NW_012102632v1      3953404 1331 +   4030761 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e macNem1.NW_012011533v1      3948041 1352 +   4820037 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=10696.000000
s hg38.chr15_KI270850v1_alt     57160 4 +    430880 ACTC
s panPan2.chr15              23096484 4 -  99763055 ACTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       349171 4 -    378907 ACTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22737683 4 - 121039945 ACTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60026187 4 + 169600520 ACTC
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9882285 4 +  10730278 ACTC
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3954735 4 +   4030761 ACTC
i manLeu1.NW_012102632v1    I 1331 C 0
s cebCap1.NW_016107979v1        21105 4 -   1024465 ACTC
i cebCap1.NW_016107979v1    C 0 C 0
e colAng1.NW_012114844v1      4059314 3186 +   5013933 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e macNem1.NW_012011533v1      3948041 1352 +   4820037 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=1678453.000000
s hg38.chr15_KI270850v1_alt     57164 681 +    430880 CTAAAGGGACAGCCTGATGGCAAGTGGCTCTTCTCATTGGCCTGGCTTCCCCTTGAGACTGGGGATGAGGAAAATCAaacagcaacgaccatttcctcagtgtcctgggtgtttgcagcaggccatgtactaaggattcacataaaagcaacaa---taacgaatctcatttaaacttcacaaatggaagtcaaaaaataccacctctattatacagatgtgaaaagagaggcccaaagacctcaagcaacttgccctaaatcatatgctaatcaatCCCTAATCAATTCTTAGCAGACGGAGAGGCAGGATTCAAATCCAGAATTCTTAACCAGTACCCAACAGTCCATCTACAATCTTAACAATTACCCTCTACTG-CCCCTTGGGCCCCCTGTCCCCAGGAGCCTGGCCCGCCGAGACTCACATCCCCAGGTGAGTGGTAACCACCAGAAGTGGCTGTGTCAGGGCTACTGCCATTGACTTTCTTTTTCCTGTTAGCTCCTGCTGGAATGCCAGGGCTCTTCCTCTGCCAATATGCTTTTAACTGTGGGAAAGAAGAGCAGTAACACTCATGAGaatgatcagcccctacagccacatcctcctttacagttttgacaaaatacccttatataccatctgatgtaatgccaccaacaaccgtacaaggtGTTGTCACAATCA
s panPan2.chr15              23096488 651 -  99763055 CTAAAGGGACAGCCTGATGGCAAGTGGCTGTACTCATTGGCCCAGCTTCCCCTTGAGAATGGGGATCAGGAAAATCAAACAGCAATGACCATTTCCTGGGTATCCTGGGTGTTTACAGCAGGCCACATACTAGGGGTTAACATGAAAACAACAACAATAAGGAatctcatttaaacttcacaaatggaagtcaaacaatactccccctattttacagatgtgaaaagagaggcccaaagagatcaaacagtttgccgtaaatca----------gatcccta-----------gaagttagagaagcaggattcaaacccagaattcttaaccagtacccagca-----------atcttaacaattaccctctacta-cccctTGTGCCCCCTGTCCCCAGGAGCCTGGCCAGCCAAGACTCACATCCCCAGGTGAGTGGCAACCACCAGAAGTGGTTGTCTCAGGGCTACTGCCAGTTTTTTTCTTTTTTGTCTTCGCTCCTGCTGGAACACCAGGCCTGTTCCTCTGCTGATATTCTTTTAGCTGTGGGAAAGAAGAGCAGTAATACACATGAGAACTACCAGCCCCTACAGCCACACCCTcctt-acagtttttgcaaaatactcttatacaccatctgatttaatgccaccaacaactgtacaaggtGTTGTCACAGTCA
i panPan2.chr15             C 0 I 33
s gorGor5.CYUI01015946v1       349175 680 -    378907 CTAAAGGGACAGCCTGATGGCAAGTGGCTCTTCTCATTGGCCTGGCTTCCCCTTGAGACTGGGGATGAGGAAAATCAaacagcaacgaccatttcctcggtgtcctgggtgtttgcagcaggccatgtactaaggattcacataaaagcaacaa---caatgaatctcatttaaacttcacaaatggaagtcaaaaaataccacctctattatacagatgtgaaaagagaggcccaaagacctcaagcaatttgccctaaatcatatgctaatcaatcccaaatcaatccttagcagacggagaggcaggattcaaatccagaattcttaaccagtaCCCAACAGTCCATCTACAATCTTAACAATTACCCTCTACTG-CCCCTTGGGCCCCCTGT-CCCAGGACCCTGGCCCGCCGAGACTCACATCCCCAGGTGAGTGGTAACCACCAGAAGTGGCTGTGTCAGGGCTACTGCCATTGATTTTCTTTTTCCTGTTAGCTCCTGCTGGAATGCCAGGGCTCTTCCTCTGCCAATATGCTTTTAACTGTGGGAAAGAAGAGCAGTAACACTCATGAGaatgatcagcccctacagccacatcctcctttacagttttgacaaaatactcttatataccatctgatgtaatgccaccaacaactgtacaaggtGTTGTCACAATCA
i gorGor5.CYUI01015946v1    C 0 I 4
s nomLeu3.chr6               22737687 652 - 121039945 CTATAGGTACAGCCTGATGGCAAGTGGCTGTACTCATTGGCCCAGCTTCCCCTTGAGACTGGGGATCAGGAAAATCAAACAGCAATGACCATTTCCTGAGTATCCTGGGTGTTTACAGCCGGCCATGTACTAGGGATTAACATAAAAACAACAACAATAAGGAatctcatttaaacttcacaaatggaagtcaaacaatactcccccgattttacagatgtgaaaagagaggcccaaagagctcaagaagtttgccgtaaatca----------gatcccta-----------gaagagggagaggcaggattcaaacccagaattcttaatcagtacccagca-----------atcctaacaattaccctccactg-ccccTTGGGCCCCCTGTCCCCAGGAGCCAGGCCAGCCAAGACTCACATCCCCAGGTGAGTGCCAACCAAAACAAGTGGTTGTCTCAGGGCTACTGCCAGGTTTTTTCTTTTTCATCTTTGCTCGTGCCGGAACACCAGGGCTGTTCCTCTGCTGATATTCTTTTAGCTGTGGGAAAGAAGAGCAGTAATACTCATGAGAACTTCCAGCCTCTACAGCCACATCCTCCTTTATAGTTTTTGCAAAATACTCTTATACACCATCTGATTTAATGCCACCAACAACTGTACAAGGTGTTGTCACGATCA
i nomLeu3.chr6              C 0 I 4
s rheMac8.chr7               60026191 623 + 169600520 CTAAAGCGACAGCCTAATGGCAAGTGGCTGTCCTCATTGGCCTAGCTTCCCCTTGAGACGGGGGTTGAGGAAAATCAAACAGCAATGACCATTTCCTGGGTATCGTGGGTGTTTACAGCAGGCCATGTACTAGGGATTACCAGAAAAACAACAACAACAAGGAatctcatttaaacttcacaactggaagtcaaacaatattacccctattttatagatgtgaaaagacaggcccaaacagctcaagcaatttgccataaatca----------gatcccta-----------gcagagggagaggctggattcaaacccagAATTCTCTACAATTACCCAGCA-----------ATCTCTACAATTA-----------------------------CCCAGGAGCCTGGCCAGCCAAGACTCACATCCCCAGGTGAGTGGCAACCACCAGAAATGGTTTTCTCAGGGCTACTTCCAGTTTTTTTCTTTTTTGTCTTTGCTCCTGCCGGAACACCAGGGCTGTTCCTCTGCTGATATTCTTAAAGCTGTGCGAAAGAAGAGCAGTAATACTCATGAGAACTACCAGCCCCTACAGCCACATCCTCCTTTACAGTTTTT-CAAAATACTCTTATACACCATCTGATTTAATGCCACCAACAACTGTACAAGGTGTTGTCACAGTCA
i rheMac8.chr7              C 0 I 4
s macNem1.NW_012011533v1      3949393 651 +   4820037 CTAAAGGGACAGTCTGATGGCAAGTGGCTGTACACATTGTCCCAGCTTCCCCTTGAGAATGGGGATCAGGAAAATCAAATAGCAATGACCATTTCATGGGCATCCTGAGTGTTTACAGCAGACCATGTACTGGGGATTAACATAAAAACAACAACAATAAGGAatttcatttaaacttcacaaatggaagtcaaacaatgctacctctgttttacagatgtgaaaacagaggcccaaaatgctcaagcaatttgccgtaaatca----------gaagccta-----------ctcgatggagaggcaggattcaatcccagaatccttaaccagtacccagca-----------atctcaacaattatcccctactg-CCCCTTGGGCCCCCTGTCCCCAGGAGCCTGGCCAGCCAAGACTCACATCCCCAGGTGAGTGGCAACCACCAGAAGTGGTTGTCTCAGGGCTACCGCCAGTTTTCTTCTTTTTTGTCTTCGTTCCTGCCGGAACACCAGAGCTGTTCCTCTGCTGATATTCTTTTAGCTGTGGGAAAGAAGAGCAGTAATACTCATGAGAACTACCAGCCCCTACAGCTACACCCCCCTTTACAGTTTTT-CAAAATACTCTTATACACCATCTGACTTAATGCCACCAACAACTGTACAAGGCGTTGTCACAGTTA
i macNem1.NW_012011533v1    I 1352 I 4
s cerAty1.NW_011999477v1      9882289 652 +  10730278 CTAAAGGGACAGCTTGATGGCAAGTGGCTGTACTCATTGGCCCAGCTTCCCCTTGAGACTAGGGATCAGGAAAATCAAAGAGCAATGACCATTTCCTGGGTATCCTGGGTGTTCACAGCAGGACATGTACCAGGGATTAACATAAAAACAACAACAatatggaatatcatttaaacttcagaaatgaaaatcaaacaacactacccctattttacagatgtgaaaagagaggtccaaagagctcaagcaacttgccataaatca----------gatcctta-----------gcagatggagaggcaggattcaaacccagaattcttagccagtacccagca-----------atcttaacaattaccctctactgCCCCCTTGGGCCCCCTGTCCCCAGGAGCCTGGCCAGCCAAGACTCACATCCCCAGGTGAGTGGCAACCACCAGAAGTGGTTGTCTCAGGGTTACTGCCAGTTTTTTTCTTTTTTGTCTTCGCTCCTGCTGGAACACCACGGCTGTTCCTCTGCTGATATTCTTTTAGCTGTGGGAAAGAACAGCAGTAATACTCATTAGAACTACCAGCCCCTACAGCCACAACACCCTTTACAGTTTTT-CAAAATACTCTTATACACCATCTGATTTAATGCCACCAACAACTGTACAAGGTGTTTTCACAATCA
i cerAty1.NW_011999477v1    C 0 I 4
s manLeu1.NW_012102632v1      3954739 652 +   4030761 CTAAAGGGACAGTCTGATGGCAAGTGGCTGTACACATTGTCCCAGCTTCCCCTTGAGAATGGGGATCAGGAAAATCAAACAGCAATGATCATTTCATGGGCATCCTGAGTGTTTACAGCAGGCCATGTACTGGGGATTAACATAAAAACAACAACAATAAGGAatttcatttaaacttcacaaatggaagtcaaacaatgctacctctgctttacagatgtgaaaacagaggcccaaaatgctcaagcaatttgccgtaaatca----------caagccta-----------ctcgatggagaggcaggattcaatcccagaatccttaaccagtacccagca-----------gtctcaacaattatcccctactg-CCCCTTGGGCCCCCTGTCCCCAGGAGCCTGGTCAGCCAAGACTCACATCCCCAGGTGAGTGGCAGCCACCAGAAGTGGTTCTCTCAGGGCTACTGCCAGTTTTTTTCTTTTTTGTCTTCGTTCCTGCCGGAACACCAGAGCTGTTCCTCTGCTGATATTCTTTTAGCTGTGGAAAAGAACAGCAGTAATACTCATGAGAACTACCAGcccctacagctacatccccctttacagtttttgcaaaatagtcttatacaccatctgatttaatgccaccaacaactgtacaaggCGTTGTCACAGCCA
i manLeu1.NW_012102632v1    C 0 I 4
s cebCap1.NW_016107979v1        21109 662 -   1024465 TTAAAGGGACAGCCTGACAGCAAAAGGCTGTTCTCCTTGGGCTGGCTTCCCCTTGAGACTGGGGTTGAGGAAAACCAAACAGCAAGGACCCTTTCCTGGGTGTCCTGGGTGTTTACAGCAGACCATGTACTAGGGATTAACAAAAAAACAACAGCAATAACGAatctcatttcaccctcacaaatggaagtcagacaataccacctgtattttacagatgtgaaaggagaggcccaaaaacctccagcaacttgccctaagtca----------tatcccta-----------gcagatggagaggcaggattcaaacccagaattcctaaccagtacccagttgttcttccacaatcttaacaattcccctctgCTG-CCCC-TGGGACCCTTTTCCCCAGAAGCCTGGCGGGCCAAGACCCACATGGCATGGTGACTGGCAACCATCAGAAGTGCCTGTCTCAGGGCTATTGTTGTTTCTTTTCTTCCTTCTTCTCACTCGTGTTGGAACAGCAGGGCTGTTTCTTTGTTGAAATTCTTTTAACTGTGGGAAAAAAGTGCAGTAGTACCCATGAGAACTacaaacccctatagtcacaacctacgttacagtttttacaaaatactattacacaccatctaatttaatgccaccgacaactctataaggtaTTGTCACAATCA
i cebCap1.NW_016107979v1    C 0 I 4
e colAng1.NW_012114844v1      4059314 3186 +   5013933 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=50887.000000
s hg38.chr15_KI270850v1_alt     57845 29 +    430880 GTGACTGAGAGGGATTCATATCATGGATA
s gorGor5.CYUI01015946v1       349859 29 -    378907 GTGACTGAGAGGGATTGATATCATGGATA
i gorGor5.CYUI01015946v1    I 4 C 0
s nomLeu3.chr6               22738343 29 - 121039945 GTGACTGAGAGGGATGGATATTATGGCTA
i nomLeu3.chr6              I 4 C 0
s rheMac8.chr7               60026818 29 + 169600520 GTGACTGAGAGGGATGGATATTATGGGGC
i rheMac8.chr7              I 4 I 4
s macNem1.NW_012011533v1      3950048 29 +   4820037 GTGACTGAGAGGAATGTATATTATGGCTT
i macNem1.NW_012011533v1    I 4 I 16
s cerAty1.NW_011999477v1      9882945 29 +  10730278 CTGATTGAGAGGGATGGATATTATGGGTA
i cerAty1.NW_011999477v1    I 4 I 15
s manLeu1.NW_012102632v1      3955395 29 +   4030761 GTGACTGAGAGGAATGTATATTATGGCTT
i manLeu1.NW_012102632v1    I 4 I 16
s cebCap1.NW_016107979v1        21775 29 -   1024465 GTGACCGAGAGAGACTGATATCATAGCaa
i cebCap1.NW_016107979v1    I 4 C 0
e panPan2.chr15              23097139 33 -  99763055 I
e colAng1.NW_012114844v1      4059314 3186 +   5013933 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=2182.000000
s hg38.chr15_KI270850v1_alt     57874 6 +    430880 Gaaaaa
s gorGor5.CYUI01015946v1       349888 6 -    378907 GAAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60026851 6 + 169600520 aaaaaa
i rheMac8.chr7              I 4 I 3
s cebCap1.NW_016107979v1        21804 6 -   1024465 aaacaa
i cebCap1.NW_016107979v1    C 0 C 0
e panPan2.chr15              23097139 33 -  99763055 I
e colAng1.NW_012114844v1      4059314 3186 +   5013933 I
e manLeu1.NW_012102632v1      3955424 16 +   4030761 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e cerAty1.NW_011999477v1      9882974 15 +  10730278 I
e macNem1.NW_012011533v1      3950077 16 +   4820037 I
e macFas5.chr7              106459921 3474 - 171882078 I
e nomLeu3.chr6               22738372 0 - 121039945 C

a score=338.000000
s hg38.chr15_KI270850v1_alt     57880 22 +    430880 ---------aaaaaaaaagaaagatcaaaaa
s panPan2.chr15              23097172 22 -  99763055 ---------AAAAAAAGGGGGGGGTGCGGGT
i panPan2.chr15             I 33 C 0
s gorGor5.CYUI01015946v1       349894 19 -    378907 ------------AAAAAAGAAAGATCAAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22738372 14 - 121039945 ----------AAAAAAAAGGGCGG-------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60026860 14 + 169600520 ---------aaaaaaaaaGAGGG--------
i rheMac8.chr7              I 3 C 0
s cebCap1.NW_016107979v1        21810 22 -   1024465 aaagaaaaaaaaaaaaaagaaa---------
i cebCap1.NW_016107979v1    C 0 C 0
e colAng1.NW_012114844v1      4059314 3186 +   5013933 I
e manLeu1.NW_012102632v1      3955424 16 +   4030761 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e cerAty1.NW_011999477v1      9882974 15 +  10730278 I
e macNem1.NW_012011533v1      3950077 16 +   4820037 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=1373119.000000
s hg38.chr15_KI270850v1_alt     57902 523 +    430880 aGGCAATACTGGAACTTAAACTCAGTCCTCTGACTCCACGCTCTGGGGTTTTGCCATGAATCAGCAGCTTCCAGGGACCAAAACCAGGGGCAGAGGTAGAAAAGCACACATTAAGCAGGCAGGAACTGTAGGCCGTGTGGTTTAGAGTCATACATCCTCACAGGTCTGCTAGCGTGAAGAAGCGTACCAGTACCTCTCACACTTTCATATCAATGTGTCCTCATGGCAGAAGGCAGCTTTTCTATTAAATCTGGGAATTTATCAGAAAGAGGACAACCCAAGCCTCATTTCAGAGCAAAGTCTGGTATACGCTTGGAAACCTATGTGTCTGTCACCCCCAAGTACATTAATGCATTTTCTC----AAGAGAAtcaagggaaaatgatgcttcagaaagatgtcccgcatttatcctgtggcACTCAAAGTACCCCAGGTTGAGACGATATGAGGAAGATTCAAGCTGTCAAGTTCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAGAGGCC
s panPan2.chr15              23097194 525 -  99763055 GggcaataatggaacttaaattcagtcttctgactccaagctccggggttttgccatgaatcagcaactcccagGGACCAAAACCAGATGCAGAGGAAGAAAAGTAAACATTACATAGGCAGGAACTACACGCTGTGTGGTT-AGAGTCACACATCCTCACATGTCTGTTAGTGTGAAGAAGTGCACCAGTATCTCTCAAACTTTTATATCAATGTGTCCTCATGGCAGAAGGCAGCTATTTTGTTAAATCTGGGA-TTTATCAGAAAGAGGACAACCCAAGTCTCATTTCAGAGAGAAGTCTGGTATACTCTTAGAAACCTATGTGAGGGTCATCCCTAAGTACATtaatgctttttctctctcaagagaatcaagggaaactgatgcttcagaaagatctcccacatttatcctgtggcACTCAATGTACCCCAAGTTGAGATGATATGAGGAAGATTCAAGCTGTCAAGTTCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAGAGACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       349913 522 -    378907 AGGCAATACTGGAACTTAAACTCAGTCCTCTG-CTCCAAGCTCTGGGGTTTTGCCATGAATCAGCAGCTGCCAGGGACCAAAACCAGGGGCAGAGGTAGAAAAGTAAACATTAAGCAGGCAGGAACTGTAGGCCGTGTGGCTTAGAGTCATACATCCTCACAGGTCTGCTAGTGTGAAGAAGCGCACCAGTACCTCTCACACTTTCATATCAATGTGTCCTCATGGCAGAAGGCAGCTTTTCTATTAAATCTGGGAATTTATCAGAAAGAGGACAACCCAAGCCTCATTTCAGAGCGAAGTCTGGTATACGCTTGGAAACCTCTGTGTCTGTCATCCCTAAGTACATTAATGCATTTTCTC----AAGAGAAtcaagggaaaatgatgcttcagaaagatgtcccacatttatcctgtggcACTCAAAGTACCCCAGGTTGAGACGATATGAGGAAGATTCAAGCTGTCAAGTTCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAGAGGCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22738386 520 - 121039945 GGGCAATAATGgaacttaaactcagtcttctgactccaagttctggggttttgccacGAATCAGTAGCTGCCAGGGACCAAAACCAGAGGCAGAGGTAGAAAAGTAAACATTAAGTAGACAGGAACTGCACTCTGTGTGGGTTACAGTCATACATCCTCACATGTCTGTTAGTGT---GAAGTGCACCAGTACCTCTCAAACTTTTATATCAATGTGTCCTCATGGCAGAAGGCAGCTTTTTTGTTAAATCTGGGAATTTATCAGAAAGAGGACAACTCAAGTCTCATTTCAGAGAGAAGTCTGGTATACTCTTAGAAACCTATGTGACTGTCATCCCTAAGTACATTAATGTTTTTTCTC----AAGAGAATCAAGGGAAATGGATGCTTCAGAAAGATCTCCCACATTTATCCTCTGGCACCCAATGTACCCCAAGTTGAGATGATATGAGGAAGATTCAAGCTGTCAAGTTCAATTTCCCAAGATCTATTCCACAGAAGATGAGTAAATCTCACTCCAGCGACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60026874 523 + 169600520 GGGCAATAATGgaacttaaactcggtcttctgactccaagctctggggttttgccatgaatcagcagctgccAGGGACCAAATCCAGAGTCAGAGGTAGAAAGGTAAACATTAAGTAGGCAGGAACTGCACTC--TGTGGTTT--AGTCATACATCCTCTCATGTCTGTTAGTGTGAAGAAGTGCACCAGTACCTCTCAAACTTTTATATCAATGTGTCCTCATGGCAGAAGGCAGCTTTTTTATTAAATCTGGAAATTTTTCAGAAAGAGGACAACCCAAGCCTCATTTCAGAGAGAGGTCTGGTATACTCTTAGAAACCTATGTGACTGTCATCTCTAAGTATATTAATGTTTTTTCTCTCTCAAGAGAATTGAGGGAAACTGATGCTTCAGAAAGATCTCCCACATTTATCCCATGGCACTCAAAGTACCCCAAGTTGAGATGATATGAGGAAGATTCAAGCTGTCAAATTCAGTTTCCCAGGACCTATTCCACAGAAGATGAGCAAATCTCACTTCAGAGACC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3950093 452 +   4820037 AGGCAATAATGgaacttaaactcagtcttctgactccaagctctggggttttgccatgaatcagcagctgccAGAGACCAAAACCAGAGGCAGAGGTAGAAAAGTAAACATTAAGTAGGCAGGAACTGCACACTGTGTGGTTTGGAGTCACACATCCTCACACGTCTGTTAGTGTGAAGAAGTGCACCGGGACCTCTCAAACTTTTATATCAATGTGTCCTCATGGCAGAAGGCAG-GTTTTTGGTAAATCTGTGAATT------------------------------------------------------------------------TCATCCCTAAGTACATTAATGTTTTTTCTCTCTCAAGAGAATCAAGGGAAACTGATGCTTCAGAAAGATCTCCCACATTTATCCTGAGACACTCAAAGTA--CCAGGTTGAGATAATATGAGGAAGATTCAAGCTATCAAGTTCAGTTTTCCAAGATCTATTCCACAGAAGATAAGCAAATCTCACTTCAGAGACC
i macNem1.NW_012011533v1    I 16 C 0
s cerAty1.NW_011999477v1      9882989 527 +  10730278 GggcaataatgggacttaaactcagtcttctgactccaagctctggggttttcccattaatcagcagctgccagAGACCAAAATCAGAGGCAAAGCTAGAAAACTAAACATTAAGTAGGCAGGAACTGCACGCTGTGTGGTTTGGAGTCATACATCCTCACATGTCTGTTAGTGTGAAGAAGTGAACCAGAACCCTTCAAACTTTTATATCCATGTGTCCTCATGGCAGAAGGCAGCTTTTTTGTTAAATCTGGGAATTGATCAGAAAGAGGACAACCCAAGTCTCATTACAGAGAGAAGTCCGGTATACTCTTAGAAACGTATGTGACTGTCATCCCTAAGTACATTAACGTTTtttctctctcaagagaatcaagggaaactgatgcttcagaaagatctcccacatttatcctgtggcACTCAAAGTACCCCAGGTTGAGATGATATGAGGAAGATTCAAGTGGTCAAGTTCAGTTTCCTAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAGAGACC
i cerAty1.NW_011999477v1    I 15 C 0
s manLeu1.NW_012102632v1      3955440 526 +   4030761 AGGCAACAATGGAACTTAAACTCAGTCTTCTGACTCCAAGCTCTGGGGTTTTGCCATGAATCAGCAGCTGCCAGAGACCAAAACCAGAGGCAGAGGTAGAAAAGTAAACATTAAGTAGGCAGGAACTGCATACTGTGAGGTTTGGAGTCATATATCCTCACACGTCTGTAAGTGTGAAGAAGTGCACCGAGACCCCTCAAACTTTTATATCAATGTGTCCTCATGGCAGAAGGCAG-GTTTTTGGTAAATCTGTGAATTTATCAGAAAGAGGACAACCCAAGTCTCATTTCAGAGAGAAGTCTGGTATACTCTTAGAAACGTATGTGACTGTCATCCCTAAGTACGTtaatgttttttctctctcaagagcatcaagggaaactgatgcttcagaaacatctcccacatttatcctgagacACACAAAGTACCCCAAGTTGAGATGATATGAGTAAGATTCAAGCTATCAAGTTCAGTTGTCCAAGATCTATTCCACAGAAGATAAGCAAATCTCACTTCAGAGACC
i manLeu1.NW_012102632v1    I 16 C 0
s cebCap1.NW_016107979v1        21832 510 -   1024465 aaGCAATACTAGACCTTAAACTCATTCCTCTGACCCCAAGCTCTGGGATTTTGCCACGAATCAGCAACTGCCAGAGACCAGAACCACAGGAAGAGGTAGAAAAGTCAACATGAAGTAGACAGGAACTGTACACCGTGTGGTTTAGA-----------------GTCTGTTAGTGTTAAGAAGAGCACCAGCACCTCTCACACTTTTCTATCAATGTGTCCTCATGGCAGAAGGCAGCCTTTCTGTTAAATCTGGGAATTCATCAGAAAGAGGACAACCCAAGTCTCATTTCAGAGACAAGTCTGGTATACTCTTAGAAACCGATGTGACTGTCATCCCTAAGTACaataacgtttttgctgtctcaagagactcaagggaaactgatgcttcagaaagatgtcccatgtttatctcatggcATTCAATGTAGCCTAAGTTGAGATGACATGAGGAAGAGTCAAGCTGTCGGTTTCAATTTCCCAAGATCTGTTCCACAGAAGATGAGCAGATCTCACTCCAGAGGCC
i cebCap1.NW_016107979v1    C 0 C 0
e colAng1.NW_012114844v1      4059314 3186 +   5013933 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=120736.000000
s hg38.chr15_KI270850v1_alt     58425 30 +    430880 ACTGACTGAAGGGCAGTCTGGTCCCAGAAC
s panPan2.chr15              23097719 30 -  99763055 ACTGACTGAAGGGCAGTCTGGTCCCAGAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       350435 30 -    378907 ACTGACTGAAGGGCAGTCTGGTCCCAGAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22738906 30 - 121039945 ACTGACTGAAGGACAGTCTGGTCCCAGAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60027397 30 + 169600520 ACTGACTGAAGGGCAGTCGGGTCCCAGAAC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3950545 30 +   4820037 ACTGACTGAAGTGCAGTCTGGTCCCAGAAC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9883516 30 +  10730278 ACTGACTGAAGGGCAGTCTGGTCCCAGAGC
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3955966 30 +   4030761 ACTGACTGAAGGGCAGTCTGGTCCCAGAAC
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4062500 30 +   5013933 ACTGACTGAAGGGCAGTCTGGTCCCAGAAC
i colAng1.NW_012114844v1    I 3186 I 21
s cebCap1.NW_016107979v1        22342 30 -   1024465 ACTGACTGAAGGACAGTCTGGTCCCACAAC
i cebCap1.NW_016107979v1    C 0 C 0
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=1757.000000
s hg38.chr15_KI270850v1_alt     58455 1 +    430880 C
s panPan2.chr15              23097749 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       350465 1 -    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22738936 1 - 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60027427 1 + 169600520 T
i rheMac8.chr7              C 0 I 20
s macNem1.NW_012011533v1      3950575 1 +   4820037 C
i macNem1.NW_012011533v1    C 0 I 20
s cerAty1.NW_011999477v1      9883546 1 +  10730278 T
i cerAty1.NW_011999477v1    C 0 I 20
s manLeu1.NW_012102632v1      3955996 1 +   4030761 C
i manLeu1.NW_012102632v1    C 0 I 20
s cebCap1.NW_016107979v1        22372 1 -   1024465 C
i cebCap1.NW_016107979v1    C 0 I 20
e colAng1.NW_012114844v1      4062530 21 +   5013933 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=1411841.000000
s hg38.chr15_KI270850v1_alt     58456 420 +    430880 GTGGAGAA--------------------CTCAGAAAAAAATGTTAAAGTCTCTCTGGAAAGTAGAAGCCTGGGAAAAAACCAAACCAAACCCA--------------------TTCTCCCATTGCCACCCAGAGATACTGTGAACATTTTGAGCTCAC-AGGGGAAGTGTAGGCTTTTCCCACTGTCAATGTCTATGTTAAGGGAGTAAGGCAGCCTGAAACCTCTTGCTCCTAGGTCCCATAGTCTCCACTCCCCTTCCAGCTGGAAATTTGTGCTGCAACCAGAGGAACCAGAAATGGGGTGAGAAAACTTAGGGGACTGGGTTGTAAGATCAAAGGCTGGTCTTGCAGCAGTAATGACAGTTCCTAGGGGCACTGTGACATCATTGCATTCCACTCCTCCCAGGGGA-GGGG----ACCACATCAGCGCGATGCCCGAGTCGCTGCTCCACGATGGGGGAGGG
s panPan2.chr15              23097750 443 -  99763055 GTGGAGAATTAGAATATGAGGTGGAGAACTCAGAAAAAAATGTTGAAGTCTGTCTGGAGAGTAGAAGCCTGGGAGAAAACCAAACCAAACCCA--------------------TTTTCCCATTACCACCCAGAGACACTGTCAACGTTTTGAGCTCAT-GGGGGAAGTGTAGGCTTTTCACACTGTCAATGTCTATGTGAAGGGAGTAAGGCAGCCTGAAACCTCTTGCACCTAGGTCCCATAGTCCCCATTTCCCTTCTAGCTGGAAATTTGTGCTGTGACCAGAGGAACCAGAAATGGGGTGAGAATGCTTAGGGGACCGGGTTGTAAGATCAAAGTCCGGTCTTGCAGCAGTAATGACAGTTACTAGGGGGACTGTGACATCACTACATTCCACTCCTCCTGGGGGT-GGGG-GGAACCACATCAGTGCAATGGCCGAGTTGCCGATCCACGATGGGGGAGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       350466 420 -    378907 ATGGAGAA--------------------CTCAGAAAAAAATGTTAAAGTCTCTCTGGAAAGTAGAAGCCTGGGAAAAAACCAAACCAAACCCA--------------------TTCTCCCATTGCCACCCAGAGATACTGTGAACATTTTGAGCTCAC-AGGGGAAGTGTAGGCTTTTCCCACTGTCAATGTCTATGTTAAGGGAGTAAGGCAGCCTGAAACCTCTTGCTCCTAGGTCCCATAGTCTCCACTCCCCTTCCAGCTGGAAATTTGTGCTGCAACCAGAGGAACCAGAAATGGGGTGAGAAAACTTAGGGGACTGGGTTGTAAGATCAAAGGCCGGTCTTGCAGCAGTAATGACAGTTCCTAGGGGCACTGTGACATCATTGCATGCCACTCCTCCCAGGGGA-GGGG----ACCACATCAGCGCGATGCCCGAGTCGCTGCTCCACGATGGGGGAGGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22738937 463 - 121039945 ATGAAGAATTAGAATATGAGGTGGAGAACTCAGAAAAGAATGTTAAAGTCTCTCTGGAGAGTAGAAGCCTGGGAGAaaaccaaaccaaaccaaaccagaccaaaccaaacTTGTTCTCCCATCGCCACCCAGAGATACTGTCAATGTTTTGAGCTCAC-GGGAGAAGTGTAGGCTTTTCACATTGTCCATGTCTATGTGAAGGGAGTAAGGCAGCCTGAAACCTCTTGCCCCAAGGTCCCATAGTCCCCATTCCCCTTCCAGCTGGAAATTTGTGCTGTGACCAGAGGAACCAGAAATGGCGTGAGAATGCTTAGGGGACTGGATTGTAAGATCAAAGGCCGGTCTTGAAGCAGTAATGAGGGTTCCTGGGGG-ACTGTGACATCACTACATTCCACTCCTCCTGGGGGA-GTGGGGGAAGAATATCAGTGTGATGGCTGAGTCACCGATTCACAATGGCAGGGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60027448 423 + 169600520 GTGGAGAA--------------------CTCAGAAAAACATGTTAAAGTCTCTCTGGAGAGTAGAAGCCTGGGAGAAAACCAAACCAAACCCG--------------------TTTCCCCATTGCCACCCAGAGATACTGTCAACGTTTTGAGTTCAT-GGGGGATGAGTAGGCTTTTCCCACTGTCAATGTCTATGAGAAGGGAATAAGACAACCAGTAACCTCTTGTTCCTAGGTCCCATATTCCCCATTTCCCTTCCAGCTGGAAATTTGTGCTGCAACCAGAGGAACCAGAAATGGGGTGAGAATGCTCAGAGGACTGGGTCGTAAGATCAAAGGCTGGTCTTGCAGCAGTAATGAAAGTTTCTAGGGGGACTGTGACATCACTACATTCCACTCCTCCTGGGGGT-GGGA-GGAACCACATCAGTGCAATGGCTGAGTCACTGAACCACGATGTGGGAAGG
i rheMac8.chr7              I 20 C 0
s macNem1.NW_012011533v1      3950596 422 +   4820037 GTGGAGAA--------------------CTCAGAAAAATATGTTAAAGTCTCTCTGGAGAGTAGAAGGCTGGGAGAAAACCAATCCAAACCCA--------------------TTCTCCCATTGCCACCCAGAGATACTGTCAACG-TTTGATCTCAC-AGTGGAAGTGTAGGCTTTTCACAAAGTCAATGTCTATCCGAAGGGAGTAAGGCGACCTGAAACCTGTTGCTCCTAAGTCCCATTGTCCCCATTCCCCTCCCAGCTGGAAATTTGTGCTGCAGCCAGAGGAACCAGAAATGGGGCGAGGATGCTTAGGGGACTGAGTTATAAGATCAAAGGCTGGTCTTGCAGCAGTAATGACAGTTCCTTGGGGGACTGTGACATCACTACATTCCACTCCTCCTGGGGGA-GGGG-GGAACCACATCAGTGCAATGGTTGAGTTGCTGATCCATGATAGGGGAGGG
i macNem1.NW_012011533v1    I 20 C 0
s cerAty1.NW_011999477v1      9883567 423 +  10730278 GTGGAGAA--------------------CTCAGAAAAACATGTTAAAGTCTCTCTGGAGAGTAGAAGCCTAGGAAAAAATGAAAGCAAACCCA--------------------TTCTCCCATTGCCACCCAGAGATACTGTCAACG-TTTGATCTCACAGGGGGAAGTGTAGGCTTTTCACAAAGTCAATGTCTATGCGAAAGGAGTAAGGCAGCCTGAAATCTGTTGCTCCTAAGTCCCATAGTCCCCATTCCCCTTCCAGCTGGAAATTTGTGCTGCAGCCAGAGGAACCAGAAATAGGGTGAGAATGCTTAGGGGACTGGGTTGTAAGATGAAAGTCCAGTCTTGCAGCAGTAATGACAGTCCCTAGGGGGACTGTGACATCACTTCATTCTACTCATCCTGGGGGT-GGGG-GGAACCATATCAGTGCAATGACTGAGTTGTTGATCCATGATGGGGGAGGG
i cerAty1.NW_011999477v1    I 20 I 77
s manLeu1.NW_012102632v1      3956017 423 +   4030761 GTGGAGAA--------------------CTCAGAAAAACATGTTAAAGTCTCTCTGGAGAGTAGAAGGCTGGGAGAAAACCAAACCAAACCCA--------------------TTCTCCCATTGCCACCCAGAGATGCTGTCAATG-TTTGAGCTCAC-AGGGGAAGTGTAGGCTTTTCACAATGTCAATGTCTATGCAAAGGGAGTAAGGCAACCTGAAACCTGTTGCTCCTAAGTCCCATAGTCCCCATTCCCCTCCCAGCTGGAAATTTGTGCTGCGGCCAGAGGAACCAGAAATGGGGCGAGGATGCTTAGGGGACTGAGTTATAAGATCAAAGGCTGGTCTTGCAGCAGTAATGACAGTTCCTTGGGGGACTGTGACATCACTACATTCCACTCCTCCTGGGGGAGGGGG-GGAACCACATCAGTGCAATGGTTGAGTTGCTGATCCATGATGGGGGAGGG
i manLeu1.NW_012102632v1    I 20 C 0
s colAng1.NW_012114844v1      4062551 422 +   5013933 GTGGAGAA--------------------CTCAGAAAAATATGTTAAAGTCTCTCTGGAGAGTAGAAGGCTGGGAGAAAACCAAACCAAACCCA--------------------TTCTCCCATTGCCACCCAGAGATACTGTCAACA-TTTGATCTCAC-AGGGGAAATGTAGGCTTTTCACAAAGTCAATGTCTATGCAAAGGGCGTAAGGCAACCTGAAACCTGTTGCTCCTAAGTCCCATAGTCCCCATTCTCCTTCCAGCTGGAAATTTGTGCTGTGGCCAGAGGAACCAGAAATGGAGCGAGAATGCTTAGGGGACTGGGTTGTAAGATCATAGGCCAGTCTTGCAGCAGTAACGACAGTTCCTAGGGGCACTGTGACATCACTACATTCCACTCCTCCTGGGGGT-GGGG-GGAACCACATCAGTGCAATGGCTGAGTTGCTGATCCATGATGGGGGAGTG
i colAng1.NW_012114844v1    I 21 C 0
s cebCap1.NW_016107979v1        22393 407 -   1024465 GTGGAGAA--------------------CTCAGAAAGAAACGTGAAAGTCTCTCTGGAGAGTAGAAGCCTGAGAGAAAACCAAACCAAACCCA--------------------TTCTCCCATTGCCACCCAGAGACACTGTCAACGTTTTGAGCTCAC-AGGGGAAGTGTAGGCTTTCCACACTGTCAATGTCTACGTTAAGGGAGTGAGGCAGCCTGAAACCTCTTGATCCTAGGTCCC-------CCATTCCCCTTCCAGCTGGAAATTTGTGCTGGGACCAGAGGAGCCAGAAATGGGATGAGAATGCTTAGGGGACTAGGTCCCAAGATCGAAGCCTGGTCTTGTAGCAGTAATGACG-----TAGGGG-ACTGTGACATCACTACATTCCACTCCCCCTGGGGGA-GGGG----ACCACATCAAGGAGATGTCTGAGTCACTGCTCCATGATGGGGGAGGG
i cebCap1.NW_016107979v1    I 20 C 0
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=184516.000000
s hg38.chr15_KI270850v1_alt     58876 77 +    430880 AAACACACGGTTTCGACCCAGGTCCTCAGAGACGCCAGCCCAAGAAGCCTAGGGAGGTCGAGCTTGGGGCAGCAGGA
s panPan2.chr15              23098193 77 -  99763055 GGGTGTAGGGCTGGGACCCAGGTCCTTGGAGATGCCAGTCCAGAGAGCCCAGGGAGGTCGGGCTTGGGTCAGCAGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       350886 77 -    378907 AAACACACGGTTTCGACCCAGGTCCTCAGAGACGCCAGCCCAAGAAGCCTAGGGAGGTCGAGCTTGGGGCAGCAGGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22739400 77 - 121039945 GGATGTAGGGCTGGGACCCAGGTCCATGGAGACACCAGCCCAAAGAGCCCAGGGATGTCGGGCTTGGGTCAGCAGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60027871 77 + 169600520 TGACATAAGGCTGGGACCCAGGTCCTTAGAGACACTAGTCCAAAGAGCCCAGGGAAGTCGGACTTGGGTCAGCAGGA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3951018 77 +   4820037 GGATATAGGGCTGGGACCCAGGCCTTTGGATGTGCCAGTCCAAAACGCCCAGGAAGGTCAGGCTCGGGTCAGCAGGA
i macNem1.NW_012011533v1    C 0 C 0
s manLeu1.NW_012102632v1      3956440 77 +   4030761 GGATATAGGGCTGGGACCCAGGCCTTTGGAGGTGCCAGTCCAAAACGCCCAGGAAGGTCAGGCTCGGGTCAGCAGAA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4062973 77 +   5013933 GGACGTAGGGCTGGTGCCCAGGTCCTTGGAGATGCCAGTCCAAAGAGCCCAGGAAGGTCAGGCTTGGGTCAGCAGGA
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1        22800 77 -   1024465 GGATGCAGGGCTGGGACCCAGGTCCTTGGAGACACCAGCCCAAAGAGCACAGGGAGGTCAACCATGGGGTAGCGGGA
i cebCap1.NW_016107979v1    C 0 C 0
e chlSab2.chr29              20303395 3929 -  24206276 I
e cerAty1.NW_011999477v1      9883990 77 +  10730278 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=1127471.000000
s hg38.chr15_KI270850v1_alt     58953 380 +    430880 GGGGAGGGCAGAGTCTGCAGTAGGGAGCCCCGGGAGTCACCAGCCCAAAGCCACCCAGGGATGACTGGTGAGGGC-A--------GGGCCTGGGGCTGGGGGACCCAGGTCCTGGGAGACGCAAGCCCAAAGAGCCCAGGGAGGTTGGGCTTGGGGTGGCAGGAGGTGAGAGCTGATTATGGAGCAGGGAGCCCCAGGAGTCACCTGCCCAAAGTCACCCTGGGGTGATTGGCAAGGGCAGGGACTGGGCTGCTTGCTGAAGGGG-TGGGGCTGACTGACTAGGCTTTGGTT-GGGGGAGCCCAGAGGGGCTGGGGTTGGGGG---GCCCCATCTGGTATGCCTCAGGAGTGGTATGGACTCTGGCACAGGTCTTGTCATCGGAGGGGATCTGT
s panPan2.chr15              23098270 379 -  99763055 GGGGAGAGCAGAGTCTGCTCAGGGAACCCCCAGGAGTCACCAGCCCAAAGTCACCCCAGGATGACTGGCGATGCTGG--------GGGGTTGGGGCTGGGGGACCCAGGTCCTTGGAGAGGTGAACCCAAAGAACCCAGAGAGGTTGGGCTTGGGACAGCAGGACGTGAGGGCCGAATATGGAGCAGGGAGCCCCAGCAGTCACCCACCCAAAGTCACTGCAGGGTGATTGGCGAGGGCAGAGGCTGGACTGCTTGCTGAAGGGG-CGGGGCTGACTGACAAGACTTTGGTG-GGGGGAACCCAGAGGCGCCAGG--TGAGGG---GACAAGCCTGGTGTGCCTCAGGAGTGGTATGGACTCTGGGAGTGGTCTTGTCATCAGAGGGGATCTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       350963 377 -    378907 GGGGAGGGCAGAGTCTGCAGTAGGGAGCCCCGGGAGTCACCAGCCCAAAGCCA-CCAGGGATGACTGGTGAGGGC-A--------GGGCCTGGGGCTGGGGGACCCAGGTCCTGGGAGACGCAAGCCCAAAGAGCCCAG-GAGGTTGGGCTTGGGGTGGCAGGAGGTGAGGGCTGATTATGGAGCAGGGAGCCCCAGGAGTCACCTGCCCAAAGTCACCCTGGGGTGATTGGCAAGGGCAGGGACTGGGCTGCTTGCTGAAGGGG-TGGGGCTGACTGACTAGGCTTTGGTT-GGGGGAGCCCAGAGG-GCTGGGGTTGGGGG---GCCCCATCTGGTATGCCTCAGGAGTCGTATGGACTCTGGCACCGGTCTTGTCATCGGAGGGGATCTGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22739477 376 - 121039945 GGGGAGAGCGGAGTCTGCAGCAGGAAGCCCCAGGAGTCACCAGCCCAAAGTCACCCAGGGATGACTGGCGAGGGT-G--------GGGCCTGGGGCTGAGGGACCCAGGTCCTTGGAG-----AGCCCAAAGAACTCAGGGAGGTCGGGCTTGGGGTGGCAGGATGTGAAGGCTGAGTATGGAGCAGGGAGCCCCAGAAGTCACTTGCCCAAAGTCACCCTGGGGTGATTGGTGAGGGCAGGGCCTGGGCTGCTTGCTGAAGGGG-CGGGGCTGACTGACAAGACTTTGGTTGGGGGGAGCATAGAGGCGCCAGGGTGGGGGT---ACCCAGCCCCGTGTGCCTCAGGAGTGGTATGGACTCTGGCAGTGGTCTTGCCATCAAAGGGAATCTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60027948 388 + 169600520 GGGGAGAGCAGAGTCTGCAGCAGAGAACCCCAGGAGTCACCAGCCCAAAGTCACCAAGGGATGActggcgatgggggtgggagctggggctggggctggggGAACCAGGTCATTGGAGAGGCGAGTCCAAAAAATCCAGGGAGGTCAGGCTTGGCATAGCAGGATGTGAGGGCTGAATATGGAACAGGGAGCCCCAGGAGTCACCCGCCCAACATCACCCTGGGGTGATTGGCGAGGTCAGGGGCTTGGCTGCTTGGTGAAGGGG--GGGGCTGACTGACAAGACTTTGGTG-AGGGGAGCCCAGAGGCGCCAGGGTTGGGTG---GCCCAGTCCGGTATTTCTCAGGAGTGGTATGGACTCTGGTAACCGTTTTGTCATTGGAGGGGATCTGT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3951095 380 +   4820037 GGGGAGAGCAGAGTCTGCAGCAGGGAACCGTAGGAGTCAGCAGCCCAAAGTCACCCAGGGATGACTGGTGATGGTGG--------GGTGCTGGGGCTGGAGGACCGAGGTCCTCGGACAGGTGAGCCCAAAGAATCCAGGGAGGTTGGGCTTGGGGCGGTAGGATGTGAGAACCAAGTATGGAGCAGGGAGCCCCAGGAGTCACCCATCAAAAGTCACCATGGGGTGATTGGTGAGGGCAGAGGCTGGGCTGCTTGCTGAAGGGG-TGGGGTTGACTGATGAGACTTTGGTG-AGGGGAGCCCAGAGGCACCAGTGTAGGG-G---ACTCAGCTTGGTGTGCCTGAGGACTGGTATGGATTCTGGCAGTAGACTTGTCATTGGAAGAGATCTCT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9884067 382 +  10730278 GGGGAGAGTAGAGTCTGCAGcagagagccccaggagtcaccagcccaaagtcacccagggatgactggtgatggtgg--------caggctggggctggggtacccaggtcttcagacAGGTGAGCCCAAAGAACCCAGGGAGGTTGGGCTTGGGGCAGCAGGACGTGATGGCCGAGTATGGAGCAGGGAGCCCCACGAGTCATCCACCAAAAGTCACCACGGGGTGACTGGCGAGGGCAGAGGCTGGGCTGCTTGCTGAGGGGGGCGTGGCTGACTGACAAGACTTTGGTG-GGGGGAGCCCAGAGGTGCCAGGGTTAGGGG---GCCCAGCCCAGTGTGCCTCAGGAGTGGTATGTACTCTGGCAGTGGTCTTGTCATTGGAGGGTATCTCT
i cerAty1.NW_011999477v1    I 77 C 0
s manLeu1.NW_012102632v1      3956517 380 +   4030761 GGGGAGAGCAGAGTCTGCAGCAGGGAACTGTAGGAGTCAGCAGCCCAAAGTCACCCAGGGATGACTGGTGATGGTGG--------GGCGCTGGGGCTGGGGGACAGAGGTCCTCGGACAGGTGAGCCCAAAGAATCCAGGGAGGTTGGGCTTGGGGCGGTAGGACGTGAGCACCAAGTATGGAGCAGGGAGCCCCAGGAGTCACCCACCAAAAGTCACCATGGGGTGATTGGTGAGGGCAGAGGCTGGGCTGCTTGCTGAAGGGG-TGGGGTTGACTGACGAGACTTTGGTG-AGGGGAGCTCAGAGGCACCAGTGTGGGG-G---ACTCAGCTTGGTGTGCCTGAGGACTGGTATGGATTCTGGCAGTAGTCTTGTCATTGGAAGGGATCTCT
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4063050 369 +   5013933 GGGGAGAGTACAGTCTGCAGCAGGAAACCCCAGGACTCACCAGTCCAAAGTCACCTAGGGATGACTGGTGATGGTGG--------GCGGCTGGGGCTGGGGGACCCAGGTCCTCGGACAGCTGAGCCCAAAGAACCCAGGGAGGTTGGGCTTGGGACAGCAGGACGTGAGGGGTGAGTATGGAGCAGGGAGACCCTGGAGTCACCTGCCAAAAGTCACCATGGGGCGACTGGCGAGGGCAGAGGCTGGGCTGCTTGCTGAGGGGG-CAGGGCTGACTGATGAGACTTTGGTG-GGGGGAGCCCAGAGGTGCCAGGGTTAGG---------------GGGTGCCTCAGGAGTGGCATGTACTCTGGCAGTGGTCTTGTCATCGGAGGGGATCTCT
i colAng1.NW_012114844v1    C 0 C 0
s cebCap1.NW_016107979v1        22877 376 -   1024465 GGTGAGAGCAGAGTCTACAGCAGGGATTCCCAGGAATCACCAGCCCAAGGTCACCCAGAAATGACTGATGAGGGTGG---------------GGGCTGGGAGACTCAGGTCCTTAGAGACATGAGCCCACAGAGCCCAGGGAGGTCAGGCTCGGGGCAGGAATAGGTGAGGCCCAGGTAGGTAGCAGGGAGTCTCAGGAGTTACACATCCAAAGTCACACTGGGATGATTGGCAAGGGCAGAGGCTGGGCTCCTTGCTGAAGGGG-TGGGGCTGA-TGACAAGACATTGGTA-GGGGGAGCTCAGAGGCACCGGGGTTGGGGGCCCACCCAGTCAGGTGTGTCTCAGAAGTGTTATGGACTCTGGCAGCGGTCTTGCTGTCTGAGGGAATCTGT
i cebCap1.NW_016107979v1    C 0 I 110
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=31670.000000
s hg38.chr15_KI270850v1_alt     59333 12 +    430880 GGCTGGGTT---GGG
s panPan2.chr15              23098649 13 -  99763055 GGCTAGGTT--GGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       351340 12 -    378907 GGCTGGGTT---GGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22739853 15 - 121039945 GGCTGGGTTGGGGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60028336 12 + 169600520 ggctgggtt---ggg
i rheMac8.chr7              C 0 n 0
s macNem1.NW_012011533v1      3951475 12 +   4820037 GGCTAGGTT---AGG
i macNem1.NW_012011533v1    C 0 I 1
s cerAty1.NW_011999477v1      9884449 12 +  10730278 GGCTAGGTT---GGG
i cerAty1.NW_011999477v1    C 0 I 1
s manLeu1.NW_012102632v1      3956897 12 +   4030761 GGCTAGGTT---GGG
i manLeu1.NW_012102632v1    C 0 I 1
s colAng1.NW_012114844v1      4063419 12 +   5013933 GGCTAGGTT---GGG
i colAng1.NW_012114844v1    C 0 I 1
e cebCap1.NW_016107979v1        23253 110 -   1024465 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=217311.000000
s hg38.chr15_KI270850v1_alt     59345 80 +    430880 GGCCATGACC----TGGTGTGTTTTACCTTTTTCTTGGCTGCGGCCAATTTCCCCTGTTGTGTTTTTTCTGACATCGCGGGGTG
s panPan2.chr15              23098662 84 -  99763055 GGCCATGACCTTTTTTTTGGCTTTTACCTTTTTCTTGGCTGCTGCCAGTTTCTTCTGTCGAGTTTCTTCTAACATCATGGGGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       351352 80 -    378907 GGCCATGACC----TGGTGTGTTTTACCTTTTTCTTGGCTGCGGCCAATTTCCCCTGTTGTGTTTTTTCGGACATCGCGGGGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22739868 80 - 121039945 AGCCATGATC----TGATGCGTTTTACCTCTTTCTTGGCTGCGGCCAGTTTACTCTGTTGAGTTTCTTCTAACATCATGGGGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113400556 80 - 169600520 GGCCATGACC----TGGTGTGTCTTACCTTTTTCTTGGCTGCTGCCAATTTTCTCTGTCGAGTTTCTTCTAACATTGTGGGGTG
i rheMac8.chr7              I 89572 C 0
s macNem1.NW_012011533v1      3951488 80 +   4820037 GGCCATGACC----TGGTGTGTCTTACCTTTTTCTTGGCTGCTGCCAATTTTCTCTGTCGAGTTTCTTCTAACATTGTGGGGTG
i macNem1.NW_012011533v1    I 1 C 0
s cerAty1.NW_011999477v1      9884462 80 +  10730278 GGCCATGACC----TGTTGTGTCTTACCTTTTTCTTGGCTGCTGCCAATTGACTCTGTCGAGTCTCTTCTAACATCATGGGGTG
i cerAty1.NW_011999477v1    I 1 C 0
s manLeu1.NW_012102632v1      3956910 80 +   4030761 GGCCATGACC----TGGTGTGTCTTACCTTTTTCTTGGCTGCTGCCAATTTTCTCTGTTGAGTTTCTTCTAACATTGTGGGGTG
i manLeu1.NW_012102632v1    I 1 C 0
s colAng1.NW_012114844v1      4063432 80 +   5013933 GGCCATGACC----TGTTGTGTCTTACCTTTTTCTTGGCTGCTGCCAATTGACTCTGTCGAGTCTCTTCTAACATCATGGGGTG
i colAng1.NW_012114844v1    I 1 C 0
e cebCap1.NW_016107979v1        23253 110 -   1024465 I
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=552247.000000
s hg38.chr15_KI270850v1_alt     59425 192 +    430880 GGGAGGGAGGCGGGGTTGGGGCCACATCAGCGAAATACCAGTGAGCACTG---CTCAATGCCTCCAGTCACCTACCAGGCAGCTGTG-CAACTGAGCCACAGGTGGCGTAACCAGGGCACCAATGGAACGCAGAATAGGGGCGTGGCCTTAATGCTC-CAAGCCCATTG-GTCAG--TGAGAAA-GATGAAAGGGAAAGGA
s panPan2.chr15              23098746 171 -  99763055 GGGAGGGAGGTAGGGTTGGGGCCACATCAGCAA---------------------TCA---CCTCCAGTCACCTACCAGAGGGCTGTG-TGACTGAGCCAGAGGAGGCGTAACCAGGGCCACACTAGAATGCAGAATAGGGGTGTGGCCTTAATGCTC-CAATCCCATTG-GTCAA--TGAGAAA-GATGAAAGGGAAAGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       351432 192 -    378907 GGGAGGGAGGCGGGGTTGGGGCCACATCAGCGAAATACCAGTGAGCACTG---CTCAATGCCTCCAGTCACCTACCAGGCGGCTGTG-CAACTGAGCCACAGGTGGCGTAACCAGGGCACCAGTGGAACGCAGAATAGGGGCGTGGCCTTAATGCTC-CAAGCCCATTG-GTCAG--TGAGAAA-GATGAAAGGGAAAGGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22739948 170 - 121039945 GGGAGGGTGGCAGGGTTGGGGCCACATCAGCGA---------------------ACA---CGTCCAGTCACCTACCAGGTAGCTGTG-CGACTGAGCCAGAGGAGGCGTAACCAGGGCACCACTAGAATGCAGAAT-GGGGCGGGGCCTTAATGCTC-CAAGCCCATTG-GTCAA--TGAGAAA-GATGAAAGGGAAAAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113400636 171 - 169600520 GGAAGGGAGGCAGTGTTGGGGCCACATCAGTGA---------------------ACA---CCTCCAGTCACCTACCAGGCGGCTGTG-CGACTGAGCCAGAGGCAGCGTAACCAGGGCCCCACTAGAACACAGAATAGGGGTGTGGCCTTAATGCTC-CAAGCCCATTG-GTCAA--TGAGAAA-GATGAAAGGGAAAGGA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3951568 171 +   4820037 GGAAGGGAGGCAGTGTTGGGGCCACATCAGTGA---------------------ACA---CCTCCAGTCACCTACCAGGCGGCTGTG-CGACTGAGCCAGAGGCAGCGTAACCAGGGCCCCACTAGAACACAGAATAGGGGTGTGGCCTTAATGCTC-CAAGCCCATTG-GTCAA--TGAGAAA-GATGAAAGGGAAAGGA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9884542 172 +  10730278 GGGAGGGAGGCAGGGTTGGGGCCACATCAGCGA---------------------ACA---CCTCCAGTCACCTACCAGGC--CTGTG-TGACTGAGCCAGAGGAGGCGTAACCAGGGCCCCA-TAGAATGCAGAATGGGGG-GTGGCCTTAATGCTCGCATGCCCATTGCGTCAAATTGAGAAAGGACGAAAGGGAAAGGA
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3956990 163 +   4030761 GGAAGGGAGGCAGTGTTGGGGCCACATCAGCGA---------------------ACA---CCTCCAGTGACCTACCAGGC---------GACTGAGCCAGAGGCGGCGTAACCAGGGCCCCACTAGAACACAGAATAGGGGTGTGGCCTTAATGCTC-CAAGCCCATTG-GTCAA--TGAGAAA-GATGAAAGGGAAAGGA
i manLeu1.NW_012102632v1    C 0 C 0
s colAng1.NW_012114844v1      4063512 171 +   5013933 GGGAGGGAGGCAGGGTTGGGGCCACATCAGCGA---------------------ACA---CCTCCAGTCACCTACCAGGCGGCTGTG-TGACTGAGCCACAGGAGGCGTAACCAGGGCCCCACTAGAATGCAGAATGGGGGCGTGGCCTTAATTCTC-CAAGCCCATTG-GTCAA--TGAGAAA-GATGAAAGGGAAAGGA
i colAng1.NW_012114844v1    C 0 N 0
s cebCap1.NW_016107979v1        23363 192 -   1024465 gggagggaggtggggtTGGGGCCACATCAGCACAATTCAAGGGAGCACTGGTAAGCA---GCTCCACTCTCCTACCAGGCAGCTGTGTTGACTGAACCAGAGGAGGCGTAACCAGGGCCCCAATAGAATGTAGAATAGGGGCGTGGCCTCCATGCTC-CAAGCCCATTG-GTCA---TGAGAAA-GATGAAAGGGAAAGGA
i cebCap1.NW_016107979v1    I 110 C 0
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=327188.000000
s hg38.chr15_KI270850v1_alt     59617 126 +    430880 GGCGTGGCCAGGCAGCAGCATGTCCAGAGGGAC-CTGTGGCATCATAAGGAAAGCTGCCCATGCAACCGCTGTCCCCGCCCACTCAGAGAAAGGGGAGGGGCC-GCCCACTCTGGGAGAGGGGAAGGG
s panPan2.chr15              23098917 126 -  99763055 GGCGTGGCCAGGCCGCAGTGTGTCCAGAGGAAC-CTGTGGCATCACAAGGAAAGCTGCCCATGCGACTGCTGTCCCCGCCCACTTGGGGAGAGGGGCGGGGCCTGCCTACTCCGGGAGAGGGG-AGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       351624 126 -    378907 GGCGTGGCCAGGCAGCGGCATGTCCAGAGTCCCTCTGTGGCATCATAAGG-AAGCTGCCCATGCAACCGCTGTCCCCGCCCACTCAGAGAAAGGGGAGGGGCC-GCCCACTCTGGGAGAGGGGAAGGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22740118 127 - 121039945 GGCGTGGCCAGGCAGCAGTGTGTCCAGAGGAAC-CTGTGGCATCACAAGGAAAGCTGCCCAGGCAACTGCTGTCCCCATCCACTTGAGGAGAGGGGCGGGGCCTGCCTACTCCAGGAGAGGGGAGGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113400807 126 - 169600520 GGCGTGGCCAGGGAGCAGTGTGTCCAGAGGAAC-CTGTGGCATCACAAGGAAAGCTGCCCATGCAACTGCTGT-CCCGCCCACTTGGAGAGAGGGGTGGGGCCTGCCTACTCCGGGAGAGGAGAGGGG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3951739 126 +   4820037 GGCGTGGCCAGGGAGCAGTGTGTCCAGAGGAAC-CTGTGGCATCACAAGGAAAGCTGCCCATGCAACTGCTGT-CCCGCCCACTTGGAGAGAGGGGTGGGGCCTGCCTACTCCGGGAGAGGAGAGGGG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9884714 126 +  10730278 GGCGTGGCCAGGGAGCAGTGTGTCCAGAGGAAC-CTGTGGCATCACAAGGAAAGCTGCCCACGCAACTGCTGTCCCCGCCCACTTGGGGAG-GGGGCGGGGCCTGCCTACTCTGGGAGAGGGGAGGAA
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3957153 126 +   4030761 GGCATGGCCAGGGAGCAGTGTGTCCAGAGGAAC-CTGTGGCATCACAAGGAAAGCTGCCCATGCAACTGCTGT-CCCGCCCACTTGGAGAGAGGGGTGGGGCCTGCCTATTCCGGGAGAGGAGAGGGG
i manLeu1.NW_012102632v1    C 0 C 0
s cebCap1.NW_016107979v1        23555 123 -   1024465 GGCGTGGCCAGGCAGCAGCAGCTCTGGAGGGAC-CTGTGGCATCCCAAGGAAAGCTGCCCCTGCAACTCCTGTCCCCGCCCACTCTGAGAT---GGAGGGGCC-ACCCACTCCACGAGAGCGGAAGGG
i cebCap1.NW_016107979v1    C 0 N 0
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=855115.000000
s hg38.chr15_KI270850v1_alt     59743 422 +    430880 CTGGGTTTTGCTTTAAAACTTTTAAAACTGTAAAAAATAAACTTTAAAAAATATATGTGTATATACTTTATATATAtgtgtgtctgtgtgtgtgtatctatgtgtTCCTCCAGAGCTGTCTTCATTATGCAGCTTCTGTGCAAAGTCTGTGATTTTGGCCTATATTTTTCATCTTCAAATGGAGTACAAGAATTACCAGTATTACCTTAACTGAGATATAGATCCTATAAAAATGGAAAATCCATAGCATGCTTGATGATT----AATGAAGCCGACTATAGTATCCGACATTCCAATAAGACAAAATAATCACAACAATTTCTCTTTTTTGG-AAAAATGTTTGTCTTATTCTCCTACATTATTGTTAAGATTT---CTTTTAAAAACAAGAAACATGTCTAATATCTTTAAAAACACAAAGCTTTTGg
s panPan2.chr15              23099043 413 -  99763055 CTGGGTTTTGCCTTAAAA----------TGTTAAAAATAAACTTTAAAAAATATATGTGTTTATACTTTATATATATGTGTGTCAGTGTGTGTGTGTCTACATGTTCCTGCAGAGCTGTCTTCATTATCCAGCTTCTATGCGTGGTCTATGATTTTGGCCTACATTTTTCATCTTCAGATGGAGTATAAGAATTACCAGTATTACCCCAATTAAGACACAAATCCTATAAAAATGGAAAATCCATAGCATGTTTGATAATTAATGAATGAAGTGGACTATATTATCCAACATTCCAATAAGTTAAAATAATCACAGTGATTTCTCTGTTCTGGAAAAAACATTTCTCTTATTCTCCTACATTA---TTAAGATTT----TTTTAAAAACAAGAAACATGTCTAATATCTTTAAAAACACAAAGCTTTTGg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       351750 420 -    378907 CTGGGTTTTGCTTTAAAACTTTTAAAACTGT-AAAAATAAACTTTAAAAAATATATGTGTATATACTTTATATATAtgtgtgtctgtgtgtgtgtatctatgtgtTCCTCCAGAGCTGTCTTCATTATGCAGCTTCTGTGCAAAGTCTGTGATTTTGGCCTATATTTTTCATCTTCAAATGGAGTACAAGAATTACCAGTATTACCTTAACTGAGATATAGATCCTATAAAAATGGAAAATCCATAGCATGCTTG-TGATT----AATGAAGCCGACTATAGTATCCAGCATTCCAATAAGACAAAATAATCACAACAATTTCTCTTTTTTGG-AAAAATGTTTGTCTTATTCTCCTACATTATTGTTAAGATTT---CTTTTAAAAACAAGAAACATGTCTAATATCTTTAAAAACACAAAGCTTTTGg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22740245 414 - 121039945 CCGGCTTTTGCTTTAAAAGCTTTAAAACTTT-AAAAATAAACTTTAAAAAATATATGTGCTTATACTTtatatatatgtgtatcagtgtgcgtatgtgtacgtgtTCCACCAGAGCTGTCTTCATTATCCAGCTTCTATGCAAGGTCTATGATTTTGGCCTACATTTTTCATCTTCAGATGAAGTACAAGAATTAGCAGTATTACCTCAATTGAGATACAAATCCTATAAAAATGGAAAATCCATAGCATGCTTGATGTTT----AATGAAACGGACTATATTATCCAACATTCCAATAAG-----ATAATCACAATGATTTCTCTGTTTTGG-AAAA--GTTTCTCTTGTTCTCCTGCATTA---TTAAGATTTTTTTTTTTTTAAACAAGAAGCATGTCTAATATCTTTAAAAACACAAAGATTTTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113400933 407 - 169600520 CTGGGTTTTGCTTTAAAACTTT----------AAAAATAATCTTTAAAAAATATATGTGTTTATACTTTATATATATGTGCGTCAGTGTGTGTGTGTCTACATGTTCCTCCAGAGCTGTCTTCATTATCTAGCTTCTATACATGGTCTATGATTTTGGCCTACATTTTTCATCTTCAGATGGAATACAAGAATTACCAGTATTACCTCAATTGAGACACAAATCCAATAAAAATGGAAAATCCATAGCACGTTTGATGATT----AATGAAGTGGACTATATTATCCAACATTCCAATAAGGTAAAATAATCACAATGATTTCTCTTTTATG--AAAGACATTTCTCTTATTCTCCTACATTA---TTTGGATTT----TTTAAAGAACAAGAAACATGTTCAATATCTTTAAAAACACAAAGCATTTGg
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      3951865 407 +   4820037 CTGGGTTTTGCTTTAAAACTTT----------AAAAATAATCTTTAAAAAATATATGTGTTTATACTTTATATATATGTGCGTCAGTGTGTGTGTGTCTACATGTTCCTCCAGAGCTGTCTTCATTATCTAGCTTCTATACATGGTCTATGATTTTGGCCTACATTTTTCATCTTCAGATGGAATACAAGAATTACCAGTATTACCTCAATTGAGACACAAATCCTATAAAAATGGAAAATCCATAGCACGTTTGATGATT----AATGAAGTGGACTATATTATCCAACATTCCAATAAGGTAAAATAATCACAATGATTTCTCTTTTATG--AAAGACATTTCTCTTATTCTCCTACATTA---TTTGGATTT----TTTAAAGAACAAGAAACATGTTCAATATCTTTAAAAACACAAAGCATTTGg
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9884840 396 +  10730278 CTGGCTTTTGCTTTAAAACGTT----------AAAAATAAACTTTAAAAAATATATGTGTTTATAATTTAAATATATGTGTGTCAGTGTGTGTGTGTCTACATGTTCCTCCAGAGCTGTCTTCGTTATCCAGCTTCTATGCATGGTCTATGA-TTTGGCCTACATTTTTCATCTTCAGGTGGAATACAAGAATTACCAGTATTACCTCAATTGAGACACAAATCCTATAAAAATGGAAAATCTATAGCATGTTTGATGATT----AA-----TGGACTATATTATCCAACATTCCAATAAGGTAAA-----CACAATGATTTCTCTTTTATG--AAAGACATTTCTCTTATTCTCCTACATTA---TTAGGATTT----TTTAAAGAACAAGAAACATGTTCAATATCTTTAAAAACACAAAGCATTTGg
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3957279 407 +   4030761 CTGGGTTTTGCTTTAAAACTTT----------AAAAATAATCTTTAAAAAATATATGTGTTTATACTTTATATATATGTGTGTCAGTGTGTGTGTGTCTACATGTTCCTCCAGAGCTCTCTTCATTATCTAGCTTCTATGCATGGTCTGTGATTTTGGCCTACATTTTTCATCTTCAGATGGAATACAAGAATTACCAGTATTACCTCAATTGAGACACAAATCCAATAAAAATGGAAAATCCATAGCACGTTTGATGATT----AATGAAGTGGACTATATTATCCAACATTCCAATAAGGTAAAATAATCACAATGATTTCTCTTTTATG--AAAGACATTTCTCTTATTCTCCTACATTA---TTAGGATTT----TTTAAAGAACAAGGAACATGTTCAATATCTTTAAAAACACAAAGCATTTGg
i manLeu1.NW_012102632v1    C 0 C 0
e chlSab2.chr29              20303395 3929 -  24206276 I
e macFas5.chr7              106459921 3474 - 171882078 I

a score=958145.000000
s hg38.chr15_KI270850v1_alt     60165 380 +    430880 gccgggtgcggtggctcacgcctgtaatgccatcactttgggaggccgaggtgggtggattgcctgaggtcaggagttcgagaccagcctggccaacatgatgaaaccctgtctctactaaaaatacaaaaactagccaggcgtggttgcgggtgcctgtaatcccagctatttgggaggctgaggcaggagaatcacttgaacccaggagatggaggttgcagtgagccaagctcacgccactgcactccagcctgggcgacagagcaagactccatctcaaaagaaataaaataaaatacaaaataaGTAAGAACACAAAGCTTTCAATTTAATAACCACTTAAAGCTCTTTACTGGTTTAAGAGAATTACAAGGCC----------------------------------------------------------------------------------------C
s panPan2.chr15              23099456 377 -  99763055 gctgggtgtggtggctcacaccagtaatcccagcacttttggaggcctaggtgggtggatcaccttaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaactagccaggtgtggtcatgggtacctgtaatcccagctactcgggaggctgaggcaggagaatcaattgaacccgggaggcggaagttgcagtgagccaaggtcatgccactgcactccagcctgggtgaaagactgagactccatctcaaaaaaaataaaat--agtcaaaaataaatagaaaCACAAAGCTTTCCATTTAATAAGCACTCAAAGCTC-TTACTGGTTTAAAGCAAATACAAGGCC----------------------------------------------------------------------------------------T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       352170 380 -    378907 gccgggtgtggtggctcacgcctgtaatgccatcactttgggaggccgaggtgggtggattgcctgaggtcaggagttcgaggccagcctggccaacatgaagaaaccctgtctctactaaaaatacaaaaactagccaggcgtggttgcgggtgcctgtaatcccagctgtttgggaggctgaggcaggagaatcactggaacccaggagatggaggttgcagtgagccaagctcacgccactgcactccagcctgggcgacagagcaagacaccatctcaaaagaaataaaataaaatacaaaataaGTAAGAACACAAAGCTTTCAATTTAATAACCACTTAAAGCTCTTTACTGGTTTAAGAGAAATACAAGGCC----------------------------------------------------------------------------------------C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22740659 374 - 121039945 gccaggtgcggtggctcactcctgtaatctcagcactttgggaggcctaggtgggtggatcaccttaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaactagacaggtgtggtcatgggtacctgtaatctcagctactcgggagactgaggcaggagaatcacttgaacctgggaggcagaagttgcagtgagccaaggtcacgccactgcactccagcttgggtgacagactgagactccatctcaaaaaagaaa------agtaaaaaattaataaaaaCACAAAGCTTTCCATTTAGTAAGCACTCAAAGCTCTTTACTGGGTTAAAGCATATACAAGGCC----------------------------------------------------------------------------------------T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113401340 364 - 169600520 gcagggtgcggtggctcacacctgtaatcccagcactctgggaggcctagacgggtggatcaccttaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatactaaagctagccaggtgtggtggtgggtacctgtaatctcagctactcgggaggctgaggcagtag-atcacttgaatcagggaggcagaagctgcagtgagccaaggtcatgccactgcactccagcctgggtgacaaagtgagactccatctcaaaagaaataaaat--aataaaaaataaataaAAACACAAAGCTTTCAATTTAATAAGCACTCAAAGCTCTTTACTGGTTTAAAG-----------------------------------------------------------------------------------------------------C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106463395 454 - 171882078 gccaggcctgatggttattgcctacaatcccagcactttgagaggctgaggcgggtggatcacctgagctcaggagttcaagaccag-ctggccaacatcatgaaaccctgtctctactaaaaatacaaaaactagctgggcatggtggcagacacctgtaatcccagtcacttgggagcctgaggcaggggaatcgcttgaaccagggaggtggaggttgtagtgagccaaaattgtgccactgcatttcagcctgagcaacagaataagactcagtctctaaataaaT-------------CATTAAATAATTACACAATGCTTTCCATTTAATAAGCACTCAAAGCCCTTTATCAGTTTAAAATAAATACAAGCCCCTTGTAAAGTAAGGCTAAATGCTAAGTGATGCGGGAGAGAAAAAGGACATAAGTAACTCCTACTCTCATGAGGTTAATGACTAAATCCT
i macFas5.chr7              I 3474 C 0
s macNem1.NW_012011533v1      3952272 364 +   4820037 gcagggtgcggtggctcacacctgtaatcccagcactctgggaggcctagacgggtagatcaccttaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatactaaagctagccaggtgtggtggtgggtacctgtaatctcagctactcgggaggctgaggcagtag-atcacttgaatcagggaggcagaagctgtagtgagccaaggtcatgccactgcactccagcctgggtgacaaagtgagactccatctcaaaagaaataaaat--aataaaaaataaataaAAACACAAAGCTTTCAATTTAATAAGCACTCAAAGCTCTTTACTGGTTTAAAG-----------------------------------------------------------------------------------------------------C
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9885236 377 +  10730278 gctgggtgcggtggctcacacctgtaatcccagcactctgggaggcctagacgggtggatcaccttaggtcaggagttcaagaccagcctggccaacatgatgaaaccccgtctctgctaaaaatacaaaagctagccaggtgtggtggtgggtacctgtaatctcagctactcgggaggctgaggcagtag-atcacttgaaccagggaggcagaagctgcagtgagccaaggtcatgccactgcactccaggctgggtgacaaagtgagactccatcttaaaagaaataaaat--aataaaaaataaataaAAACACAAAGCTTTCAATTTAATAAGCACTCAAAGCTCTTTACTGGTTTAAAGCATATACAAAGCC----------------------------------------------------------------------------------------C
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012102632v1      3957686 377 +   4030761 gcagggtgcggtggctcacacctgtaatcccagcactctgggaggcctagacgggtggatcaccttaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaactagccaggtgtggtggtgggtacctgtaatctcagctactcaggaggctgaggcagtag-atcacttgaaccagggaggcagaagctgcagtgagccaaggtcatgccactgcactccaggctgggcgacaaagtgagactccatctcaaaagaaataaaat--aataaaaaataaataaAAACACAAAGCTTTCAATTTAATAAGCACTCAAAGCTCTTTACTGGTTTAAAGCATATACAAAGCC----------------------------------------------------------------------------------------C
i manLeu1.NW_012102632v1    C 0 C 0
e chlSab2.chr29              20303395 3929 -  24206276 I

a score=2373670.000000
s hg38.chr15_KI270850v1_alt     60545 658 +    430880 ATTTTTCTAGAATCACCTGGCCTCTCTAAGCCTTGCAAATGAAGCTGAATTTCTCACTTGATACTTGGCTCTCACTTGCAGTCATGAAAACCAAGAATT-TGTTATGTCACTGTGTATTGCTTGTTACCTGAAATCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCATGATTTTCTCCATAACCTGTGTGCTT-CTTATCCCACACCAAACTAAGCTTTTTTTCTAGAGCTCTGCAACTTACAGTTAGTATATGAGagcagttctcaaaaatgtagtctctggactagcagctccagcagcacc-------------tgggaacttcttataaatacacatcctccggccccaccctggacctgatgaatcagaaactctggagtagggctcagcaatctgtgctgcagtaatccctccaggtgTTCAAGAACCTCTGGCATACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAACCAGGGATACTATATGTTTTCTCT--ATATGAAACAATGACGTGCAATTAAAAGACATAAATCTCCTTCCTGCTCCCACCTTCCAGCCAATGTGTTTTATTTTTATGAGTTAAATAAGAAAA-------CAATCAGAGATTTTGTCTAAATCGCATATTTACAGGTATCAGTTCTCATCCAGCCTGATCTTATCCA
s panPan2.chr15              23099833 681 -  99763055 ATTTTTCTAGAATCACCTGGCCTCTCTAAGCCTTGCAAATGAAACTGAATTTCTCACTTGATACTTGGCTATGACTTGCAATCATGAAAACCAAGAATTGTGTTATGTCACTGTGTATTGACTGTTACCTGAATTCCACACGAGGCTGGGATCAACGGTTGAATCTTTCATGATTTGCTCCATAACCTGTGAGCTTCCTTTCCCCACACCAAACTAAGC-TTTGTTCTAGAGTTCTACAATTTACAGTTAGTAGACAAGaggggttctcaaaaatgtagcctctggactagcagcaccagcagaaccnnnnnnnnnnnnnnnnnnnntttttataagtgcaaattctcaggccccaccctgcacatggtgaatcagaaactctggagtagggctcagcaatctgtgctgcagtcatccctccaggtgTTCAAGAACCTCTGGCATACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAGCCAGGGATACCATATGTTCTGTCTTGATATGAAACAATGACATGCAATTAAAAGACATAAATCTCCTTCCTATTCCCACCCTCCATCCAATGTGTTTTGTTTTTATGAGTTAAATAAGAAAACAAATGGCAATCAGAGATTCAGCCTAAAAAGTATGTTTACAAGTGTCAGTTCTCATCCAGCCTGATCTCACACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       352550 660 -    378907 ATTTTTCTAGAATCACCTGGCCTCTCTAAGCCTTGCAAATGAAACTGAATTTCTCACTTGATACTTGGCTATCACTTGCAGTCATGAAAACCAAGAATT-TGTTATGTCACTGTGTATGGCTTGTTACCTGAAATCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCACGATTTTCTCCATAACCTGTGTGCTT-CTTATCCCACACCAAACTAAGCTTTTTTTCTAGAGCTCTGCAATTTACAGTTAGTATATGAGagcagttctcaaaaatgtagtctctggactagcagctccagcagcacc-------------tgggaacttcttataaatacacattctcaggccccaccctggacctgatgaatcagaaactctggagtagggctcagcaatctgtgctgcagtaatccctccaggtgTTCAAGAACCTCTGGCATACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAACCAGGGATACTATATGTTCTGTCTCTATATGAAACAATGACATGCAATTAAAAGACATAAATCTCCTTCCTGCTCCCACCTTCCAGCCAATGTGTTTTATTTTTATGAGTTAAATAAGAAAA-------CAATCAGAGATTTCATCTAAATCGCACATTTACAGGTATCAGTTCTCATCCAGCCTGATCTTATCCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22741033 663 - 121039945 ATTTTTCTAGAATCACCTGGCCTCTCTAAGCCTTGCAAATGAAACTGAATTTCTCACTTGACACTTGGCTATGACTTGCAAGCATGAAAACCAAGAATTGTGTTGTGTCACTGTGTATTGCTTGTTACCTGAATTCCACACTAGGCTGGGATCAAGGGTTCAATCTTTCATGATTTGCTCCATATCCTGTGAGCTT-CTTTTCCCACACCAAACTAAGC-TTTGTTCTAGAGTTCTACAATTTACAGTTAGTAGACAAGagtggttctcaaaaatgtagtctctggactagcagcaccagcagaacc-------------tgagaactttttataactgcaaattctcaggccccaccctgtacctggtgactcagaaactctggagtagggctcagcaatctgtgctgcagtgatccctccaggtgTTCAAGAACCTCCGGCATACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAGCCAGGGATGCCATATGTTCTGTCTTGATATGAAACAATGGCATGCAATTAAAAGACATAAATCTCCTTCCTACTCCCACCCTCCATCCAATGTGTTTTATTTTTATGAGT----TAAGAAAACCAATGGCAATCAGAGATTCAGCCTAAAAAGTATATTTACAAGTGTCAGTTCTCATCCAGCCTGATCACATACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113401704 666 - 169600520 ATTTATCTAGAATCACCTGACCTCTCTAAAACTTGCAAATGAAACTGAATTTCTCACTTGATACTTGGCTATGACTTACAACAATGAAAACCAAGAACTGTGCTATATCACTGTGTATTGCTTGTTACCTGAATTCCACACTAGACTGAGATCAAGGGTTGAATCTTTCATGATTTGCTCCATAACCTGTGAGCTT-CTTTTCCCACACCAAACTAAGC-TTTTTT-TAGAGTTCTACAATTCACAGTTAGTAGACAAGagtggttctcaaaaatgtagtctctggactagcagcaccagcagaacc-------------tgagaactttttataagtgcaaattctcaggccccaccctggacctcgtgaaagagaaactctggagtagggctcagcaatctgtgctgcagtaatccctccagatgTTCAAGAACCTCTGGCATACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAGCCAGGGATACCATATGTTCTGTCTTGATACGAAACCATGACATGCAATTAAAACACATAAATCTCCTTCCTACTCCCACCCTCCACCCAATGTGTTTTATTTTTATGTGTTAAATAAGAAAACAAGTGGCGATCAGAGATTCAATCTAAAAAGTATATTTACAAGCGTCAGTTCTCATTCAGCCTGATCTCATACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106463849 663 - 171882078 ATTTTTCTAGAATCACCTGGCCTCTCTAAGCCCTGTGAATGAAACTGAATTTCTCACTCAATACCTGGCTATGACTTGCAATCATGAAAACCAAGAATTGTGTTATGTCACCGTGTATTGCTTGTAACCTGAATTCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCATGATTTGCTCCATAACCTGTATGCTT-CTTATCCCAGACCAAACTAAGC-TTTTTTCTAGAGTTCTGCAATTTACAGTTAGTATATAAGagtggttttcaaacatgtagtctctggaccagcagctctagcagcacc-------------tgggaacttcttataaatgcaaattctcaggccccacccaggacctgatgaatcagaaactctggactagggctcagcaatcggtgctgcagtagtccctccaggtgTTCAAGAACCTCTGGCATATAGCAGGTAGTAAAATGTATTTCCTTCTGTAGGTCCAAAGCCAGGGATACTATATGTTCTGTCTCAAAATGAGAAAATGACATGCAATTAAAAGACGTATATC----TCCTACTCCCACCCTCCATCCAATGTGTTTTATTTTTATGAGTTAAATAAGAAAATGAGTGGCAATCAGAGATTTAATCTAAAACGTATATTTACAGGTATCAGTTCTCATCCAGCCTGATCTCATCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3952636 666 +   4820037 ATTTATCTAGAATCACCTGACCTCTCTAAAACTTGCAAATGAAACTGAATTTCTCACTTGATACTTGGCTATGACTTACAACAATGAAAACCAAGAAATGTGCTATATCACTGTGTATTGCTTGTTACCTGAATTCCACACTAGACTGAGATCAAGGGTTGAATCTTTCATGATTTGCTCCATAACCTGTGAGCTT-CTTTTCCCACACCAAACTAAGC-TTTTTT-TAGAGTTCTACAATTCACAGTTAGTAGACAAGagtggttctcaaaaatgtagtctctggactagcagcaccagcagaacc-------------tgagaactttttataagtgcaaattctcaggccccaccctggaccttgtgaaagagaaactctggagtagggctcagcaatctgtgctgcagtaatccctccagatgTTCAAGAACCTCTGGCATACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAGCCAGGGATACCATATGTTCTGTCTTGATACGAAACCATGACATGCAATTAAAACACATAAGTCTCCTTCCTACTCCCACCCTCCACCCAATGTGTTTTATTTTTATGTGTTAAATAAGAAAACAAGTGGCGATCAGAGATTCAGTCTAAAAAGTATATTTACAAGCGTCAGTTCTCATTCAGCCTGATCTCATACA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9885613 666 +  10730278 ATTTATCTAGAATCACCTGACCTCTCTAAAACTTGCAAATGAAACTGAATTTCTCCCTTGATACTTGGCTATGACTTACAACCATGAAAACCAAGAATTGTGCTATATCACTGTATATTGCTTGTTACCTGAGTTCCACACTAGACTGAGATCAAGGGTTGAATCTCTCATGATTTGCTCCATAACCTGTGAGCTT-CTTTTCCCACACCAAACAAAGC-TTTTTT-TAGAGTTCTACAATTTACAGTTAGTAGACAAGagtggttctcaaaaatgtagtctctggactatcagcaccagcagaacc-------------tgagaactttttataagtgcaaattctcaggccccaccctggacctggtgaatcagaaactctggagtaggactcagcaatctttgctgcagtaatccctccagatgTTCAAGAACCTCTGGCATACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAACCAGGGATACCATATGTTCTGTCTTGATATGAAACCATGACATGCAATTAAAACACATAAGTCTCCTTCCTACTCCCACCCTCCATCCAATGTGTTTTATTTTTATGAGTTAAATAAGAAAACAAATGGCAATTAGAGATTCAGTCTAAAAAGTATATTTACAAGTGTCAGTTCTCATCCAGCCTGATCTCATACA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29              20307324 667 -  24206276 ATTTTTCTAGAATCACCTGGCCTCTCTAAGCCCTGTGAATGAAACTAAATTTCTCACTCAATACCTGGCTATGACTTGCAATCATGAAAACCAAGAATTGTGTTATGTCACCGTGTATTGCTTGTAACCTGAATTCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCATGATTTGCTCCATAACCTGTATGCTT-CTTATCCCAGACCAAACTAAGC-TTTTTTCTAGAGTTCTGCAATTTACAGTTAGTGTATAAGagtggttttcaaacatgtagtctctggaccagcagctctagcagcacc-------------tgggaacttcttataaatgcaaattctcaggccccaccctggacctgatgaatcagaaactctggactagggctcagcaatctgtgctgcagtagtccctccaggtgTTCAAGAACCTCTGGCATACAGCACGTAGTAAAATGTATTTCCTTCTGTAGGTCCAAAGCCAGGGATACTATATGTTCTGTCTCGATATGAAAAAATGACATGCAATTAAAAGACATATATCTCCTTCCTACTCCCACCCTCCATCCAATGTGTTTTATTTTTATGAGTTAAATAAGAAAATGAGTGGCAATCAGAGATTTAATCTAAAACGTATATTTACAGGTATCAGTTCTCATCCAGCCCGATCTCATCCG
i chlSab2.chr29             I 3929 C 0
s manLeu1.NW_012102632v1      3958063 666 +   4030761 ATTTATCTAGAATCACCTGACCTCTCTAAAACTTGCAAATGAAACTGAATTTCTCACTTGATACTTGGCTATGACTTACAACCATGAAAACCAAGAATTGTGCTATATCACTGTGTATTGCTTGTTACCTGAGCTCCACACTAGACTGAGATCAAGGGTTGAATCTTTCATGGTTTGCTCTATAACCTGTGAGCTT-CTTTTCCCACACCAAACAAAAC-TTTTTT-TAGAGTTCTACAATTTACAGGTAGTAGGCGAGGgtgcttctcaaaaatgtagtctctggactagcagcaccagcagaacc-------------tgagaactttttataagtgcaaattctcaggcctcaccctggacctcatgaaagagaaactctggagtagggctcagcaatctgtgctgcagtaatccctccaggtgtttAAAAACCTCTGGCATACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAGCCAGGGATACCATGTGTTCTGTCTTGATATGAAACCATGACATGCAATTAAAACACATAAATCTCCTTCCTGCTCCCACCCTCCACCCAATGTGTTTTATTTTTATGAGTTAAATAAGAAAACAAGTGGCAATCAGAGATTCAGTCTAAAAAGTATATTTACAAGTGTCAGTTCTCATTCAGCCTGATCTCATACA
i manLeu1.NW_012102632v1    C 0 I 25

a score=55234.000000
s hg38.chr15_KI270850v1_alt     61203 29 +    430880 ATATCATTTATATTCTCTTACATGTGAAG
s panPan2.chr15              23100514 29 -  99763055 ATACCATTTACACCCTCTTACCTCTCAAG
i panPan2.chr15             C 0 I 1
s gorGor5.CYUI01015946v1       353210 29 -    378907 ATATCATTTATATTCTCTTACATGTGAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22741696 29 - 121039945 ATAGCATTTACACCCTCTTACCTTTCAAG
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr7              113402370 24 - 169600520 -----ATTTACACCCTCTTACATCTCAAG
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              106464512 28 - 171882078 ATATCATTTATATCCTCTTATGTGTAAA-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3953302 24 +   4820037 -----ATTTACACCCTCTTACATCTCAAG
i macNem1.NW_012011533v1    C 0 I 1
s cerAty1.NW_011999477v1      9886279 29 +  10730278 ATACCATTTATACTCTCTTACCTCTCAAG
i cerAty1.NW_011999477v1    C 0 I 1
s chlSab2.chr29              20307991 28 -  24206276 ATATCATTTATATCCTCTTATGTGTAAA-
i chlSab2.chr29             C 0 C 0
e manLeu1.NW_012102632v1      3958729 25 +   4030761 I

a score=2004572.000000
s hg38.chr15_KI270850v1_alt     61232 601 +    430880 TTTTAGAGAAGGATCTTCACAATGTAAGACTCAGGCACACTAGCAGTTCTGTAATAAAACACCAAGTAGATCAGAATGTCCAAACTTACTGGAGAAGAAAAGTGGAATCATTGGCTATATTTTCAAATTGCAATAAACAGGATAT-TAAAGTTTTGAA-TTTTTTTCACCTTCATCCTTCCACGTTAATAGAATTAAGCCAAAATACTTG--TCTTCCAAAGCCTCT-AGCCAGGCAAAATTTTACTATATTACTTCTTGC-TTTTCAATGGCTATAAAGCAGACTCCTGGTAGGCACATTTGGTATACCTGCAAAGATGAAGAACTAAACAGTTCCATCTGTTCAATACTGAAACAAAAGTCCTGCAAACCTCGGATGGTGAGTGTAATACTTCAGCACTAGCACCAAAGCCTCAAATATGAAAAGATACCAAGAACACCACTAGCAAAC-AAAACTAAACTCTCggctgggagctctagttca-tgccgtaatcccagcactttggcaagcaaaggtgggaggattacttgaagtcaggaattcaagaccagccttggcagcatagtgaattcacacctctacagaaag-tttttaaaattagctggg
s panPan2.chr15              23100544 602 -  99763055 TTTTTAAAAAGTGTCTTCACAATGTAAGTCTCAGGCACACTAGCAGTTCTATAATAAAACACCAAGTAGATCAGAATGTCCAAACTTACTAGAGAAGAAAAGTGGAATCACTGGCTGTATTTTCAAATTGCATTCAACAGGAAAT-GTAAGTTTTGAA-TTCTTTTCACCTTCACACTTCCAAGTTAATAGCATTAAATCAGAATACTTCATTCTTCCAAAGCCTCT-AGCCAGGCAAAGTTTTACTGTATTACTTCTTGC-TTTCC-ATGGATATAAAGCAGAGTCCTGCTAGGCACATTTTGTATGCCTGCAAAGATGCAGAACTAAACAGTTCCATCTATTCAATATTAAAACAAAAGTCCTTTAAACCTCGGATGGTGAGTGTAATACTTCAGCACTAGCACCAAAGCCTCAAATATAAAAAGATACCAAGATCGCCACTAGCAAAC-AAAA-TGAGCTCTCggctgggagtagtaattcactcctgtaatcccaacagtttggcaacccaaggtgggaggatcactttaagtcaggagttcaagaccagcctgggcagcatagcgaattcgcatctctacaaaaaa-ttttaaaaattagctggg
i panPan2.chr15             I 1 C 0
s gorGor5.CYUI01015946v1       353239 602 -    378907 TTTTAGAGAAGGATCTTCACAGTGTAAGACTCAGGCACACTAGGAGTTCTATAATAAAACACCAAGTAGATCAGAATGTCCAAACTTACTGGAGAAGAAAAGTGGAATCATTGGCTATATTTTCAAATGGCAATAAACAGGAAAT-TAAAGTTTTGAATTTTTTTTCACCTTCATCCTTCCAAGTTAATAGAATTAAGCCAAAATACTTG--TCTTCCAAAGCCTCT-AGCCAGGCAAAATTTTACTATATTACTTCTTGC-TTTTCAATGGCTATAAAGCAGACTCCTGGTAGGCACATTTGGTATACCTGCAAAGATGAAGAACTAAACAGTTCCATCTGTTCAATACTGAAACAAAAGTCCTGCAAACCTCGGATGGTGAGTGTAATACTTCAGCACTAGCACCAAAGCCTCAAATATGAAAAGATACCAAGAACACCACTAGCAAAC-AAAACTAAACTCTCggctgggagctctagttcg-tgccgtaatcccagcactttggcaagcaaaggtgggaggattacttgaagccaggaattcaagaccagccttggcagcatagtgaattcacacctctacagaaag-tttttaaaattagctggg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22741726 603 - 121039945 TTTTTAAAAAGTGTCTTCACAATGTAAGTCTCAGATACACTAACAGTTCTATAATAAAACACCAAGTAGATCAGAATGTCCAGACTTACTAGAGAAGAAAAGTGGAATCACTGGCTGTATTTTCAAATTGCATTTGACAGGAAATGTTAAGTTTTGAA-TTCTTTTCACCTTCACACTTCCAAGTTAATAGCATTAAATCAGAATACTCCATTCTTCCAAAGCCTCT-AGCCAGGCAAAGTTTTACTGTATTACTTCTTGC-TTTCA-ATGTATATAAAGCAGAGTCCTGCTAGGCAGATTTTGTATACCTGCAAAGATGCAGAACTAACCAGTTCCATCTATTCAATATTAAAACAAAAGTCCTGCAAACCTCAGATGGTGAATGTAATACTTCAGCACTAGCAGCGAAGCCTCAAATATAAAAGGATACCAAGATCACCACTAGCAAAC-AAAA-TGAGCTCTCAgccaggagcagtagttcacgcctgtaatcccaaccctttggcaagccaaggtgggaggatcactttaaatcaggagttcaagaccagcctgggcagcatagtgaattcgcatctctacgaaaaa-ttttaaaaattagctgag
i nomLeu3.chr6              I 1 C 0
s rheMac8.chr7              113402395 603 - 169600520 TTTTAAAAAAGTGTCTTCACAATGTAAGTCTCAGACACACTAGCAGTTCTATAATAAAACACCAAGTAGATGGGAATGTCCAAACTTACTAGAGAAGAGAAGTGGAATCATTGGCTGTATTTTCAAATTGCATTCAACAGGAAAT-GTAAGTTTTGAA-TTCTTTTCACCTTCACACTTCCACCTTAATAGAATCAAATCAGAATACTTCATTATTTCAAAGCCTCT-AGCCAGGCAAAGTTTTATTGTATTACTTCTTTC-TTTCA-GTGGATATAAAGCTGAGTCCTGGTAGGTACATTTTTTATGTCTACAAACATGCAGAACTAAACAGTTCCATCTGTTCAATATTAAAACAAAAGTCCTGTAAACCTTGGATAGTGAGTATAATACTTCAGCACTAGCACCAAAGCCTCAAATATAAAAGGATACCAAGAACACCACTAGCAAAC-AAAA-TGAGCTCTCAgccagaagcagtagttcatgtctgtaatcccagaactttggcaagccaaggtggtaggctcactttaagtcaggagttcaagaccagcctgggcagcatagtgaattcacatctctacaaaaaatttttaagaattagctggg
i rheMac8.chr7              I 1 I 56372
s macFas5.chr7              106464540 588 - 171882078 TTTTAGAAAAGGATCTTCACAATGTAAGACTCAGGCATACTAGGAGTTCTGTAATAAAACACCAAGTAGATCAGAATGTCCAAAATTACTGGAGAAGAAAACTGGAATCATTGGTTATATTTTCAAATTGCATTCAACAGGAAAT-TTAAGTTTTGAA-TTTTTTTCACCTTCAT-CTTCC-----AATAGAATTAAGCCAAAATACTCCAGCCTTCCAAAGCCTCT-AGCCAGGCAAAATTTTACTATATTACTTCTTGCTTTTCA-ATGGCTATAAAGCAGACTC---------ACATTTTGTATAGTTGCAAAGATGCAGACCTAAACAGTTCCATCTGTTCAAGATTAAAACAAAAGTCCTGTAAACCTCAGATGGTGAGTGTAATACTTCACCATTAGCCCCAAAGCCTCAAATATGAAAAGATACCAAGAACACCACTAGCAATCGAAAG-TAAACTCTTggccgggagcactagttcatg-ccgtaatcccagcactttggcaagccaaggtgggaggattacttgaagtcaggagttcgagaccagtctgggcagcatagtgagttcacatctctacaaaaag-ttttaaaaattagctagg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      3953327 603 +   4820037 TTTTAAAAAAGTGTCTTCACAATGTAAGTCTCAGACACACTAGCAGTTCTATAATAAAACACCAAGTAGATGGGAATGTCCAAACTTACTAGAGAAGAGAAGTGGAATCATTGGCTGTATTTTCAAATTGCATTCAACAGGAAAT-GTAAGTTTTGAA-TTCTTTTCACCTTCACACTTCCACGTTAATAGAATCAAATCAGAATACTTCATTATTTCAAAGCCTCT-AGCCAGGCAAAGTTTTATTGTATTACTTCTTTC-TTTCA-ATGGATATAAAGCTGAGTCCTGGTAGGTACATTTTTTATGTCTACAAACATGCAGAACTAAACAGTTCCATCTGTTCAATATTAAAACAAAAGTCCTGTAAACCTTGGATAGTGAGTATAATACTTCAGCACTAGCACCAAAGCCTCAAATATAAAAGGATACCAAGAACACCACTAGCAAAC-AAAA-TGAGCTCTCAgccagaagcagtagttcatgtctgtaatcccagaactttggcaagccaaggtggtaggctcactttaagtcaggagttcaagaccagcctgggcagcatagtgaattcacatctctacaaaaaatttttaagaattagctggg
i macNem1.NW_012011533v1    I 1 I 46855
s cerAty1.NW_011999477v1      9886309 603 +  10730278 TTTTAAAAAAGTGTCTTCACAATGCAAGTCTCAGGCACACTAGCAGTTCTACAATAAAACACCACGTAGATTAGAATGACCAAACTTACTACAGAAGAAAAGGGGAATGATTGGCTGTATTTTCAAATTGCATTCAACCAGAAAT-GTAAGTTTTGAA-TTCTTTTCACCTTCACACTTCCAAGTTAATAGAATTAAATCAAAATACTCTATTCTTTCAAAGCCTCTAAGCCAGGCGAAGTTTCATTGTATTACTTCTTGA-TTTCA-ATGGATATAAAGCAAAATCCTGGTAGGCACATTTTGTATGCCTGCAAAGATACAGAACTACACAGTTCCATCTCTTCAATATTAAAACAAAAGTCCTGTAAACCTCAGATGGTGAGTGTAATACTTCAGCACTAGCACCAAAGCCTCAAACATAAGAAGATACCAAGAACTCCGCCAGCAAAC-AAAA-TGAGCTCTTggctaggagcagtagttcacgcctgtaatcccagcacgttggcaaaccaaggtgggaggatcacattatgtcaggagttcaagaccagcctgggcagcacagtgaattcacatctctacaaaaat-ttctaaaagttagctggg
i cerAty1.NW_011999477v1    I 1 I 32448
s chlSab2.chr29              20308019 588 -  24206276 TTTTAGAAAAGGATCTTCACAATGTAAGACTCAGGCATACTAGGAGTTCTGTAATAAAACACCAAGTAGATCAGAATGTCCAAAATTACTGGAGAAGAAAACTGGAATCATTGGTTATATTTTCAAATTGCATTCAACACGAAAT-TTAAGTTTTGAA-TTTTTTTCACCTTCAT-CTTCC-----AATAGAATTAAGCCAAAATACTCTAGCCTTCCAAAGCCTCT-AGCCAGGCAAAATTTTACTATATTACTTCTTGCTTTTCA-ATGGCTATAAAGCAGACTC---------ACATTTTGTATAGTTGCAAAGATGCAGACCTAAACAGTTCCATCTGTTCAATATTAAAACAAAAGTCCTGTAAACCTCAGATGGTGAGTGTAATACTTCACCATTAGCCCCAAAGCCTCAAATATGAAAAGATACCAAGAACACCACTAGCAATCGAAAG-TAAACTCTCggccgggagcactagttcatg-ccgtaatcccagcactttggcaagccaaggtgggaggattacttgaagtcaggagttcaagaccagtctggacagcatagtgagttcacagctctacaaaaag-ttttaaaaattagctggg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012102632v1      3958754 603 +   4030761 TTTTAAAAAAGTGTCTTCACAATGTAAGTTTCAGGTACACTAGCAGTTCTATAATAAAACACCAAGTAGATCAGAATGACCAAACCTACTAGAGAAGAAAAGTGGAATGATTGGCTGTATTTTCAAATTGCATTCAACAGGAAAT-GTAAGTTTTGAA-TTCTTTTCACCTTCACACTTCCACGTTAATAGAATCAAATCAGAATACTTCATTATTTCAAAGCCTCT-AGCCAGGCAAAGTTTTATTGTATTACTTCTTGC-TTTCA-ATGGATATAAAGCAGAGTCCTGGTAGGTACATTTTTTATGTCTACAAACATGCAGAACTAAACAGTTCCATCTGTTCAATATTAAAACAAAAGTCCTGTAAACCTTGGATAGTGAGTGTAATACTTCAGCACTAGCACCAAAGCCTCAAATATAAAAGGATACCAAGAACACCACTAGCAAAC-AAAA-TGAGCTCTCAgccagaagcagtagttcatgtctgtaatcccagaactttggcaagccaaggtggtaggatcactttaagtcaggagttcaagaccagcctgggcagcatagtgaattcacatctctacaaaaaatttttaagaattagctggg
i manLeu1.NW_012102632v1    I 25 N 0

a score=19733.000000
s hg38.chr15_KI270850v1_alt     61833 13 +    430880 tgtggcagcacac
s panPan2.chr15              23101146 13 -  99763055 cgtggtggcacac
i panPan2.chr15             C 0 I 24711
s gorGor5.CYUI01015946v1       353841 13 -    378907 tgtggcagcacac
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22742329 13 - 121039945 cgtggtggcacac
i nomLeu3.chr6              C 0 I 45553
s macFas5.chr7              106465128 13 - 171882078 tgtgtcagcacac
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20308607 13 -  24206276 tgtgtcagcacac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       169236 13 -    383355 cgtggtggcacac
i manLeu1.NW_012099388v1    N 0 I 37769
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=1820.000000
s hg38.chr15_KI270850v1_alt     61846 2 +    430880 TT
s gorGor5.CYUI01015946v1       353854 2 -    378907 TT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106465141 2 - 171882078 TT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20308620 2 -  24206276 TT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       268966 2 +   4111199 TT
i colAng1.NW_012116021v1    N 0 C 0
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               22742342 45553 - 121039945 I

a score=2345.000000
s hg38.chr15_KI270850v1_alt     61848 2 +    430880 CC
s gorGor5.CYUI01015946v1       353856 2 -    378907 CC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22787895 2 - 121039945 CC
i nomLeu3.chr6              I 45553 C 0
s macFas5.chr7              106465143 2 - 171882078 CC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20308622 2 -  24206276 TC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       268968 2 +   4111199 CC
i colAng1.NW_012116021v1    C 0 C 0
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=1857900.000000
s hg38.chr15_KI270850v1_alt     61850 1351 +    430880 TGGGGCAGATGTGCCATTGCTGGAAACTTCTCTATGGAGA--------GTACCAAGTACTTCTA-CCTGTAGCATTTTCCCTGGCTGGAATCCTGCAATTATCACAGTAGCCCGAGATCCAAGAAGGCAGAGCAGGAGCATCCTGTCCCCTCCCCAGCAGGTGCAA-GGGAGGCTGGGGGGTGAGGCACA----------------AGCCCGTG-GGAGGGTGAGGAGCAGGAGGGATGCATGGTGAGCCTCTGTTGACTGCTTGCTGCCTCAGCTGGAAGGTCAGGACCAAATGTCTATTACAGGTTA------A-----ATTA-----------------cagaagtatttcagattttgga----tttttttcagattttgg------------------------------------aattcgaaaatctgaaatccaaaatgctccaatgagcatttcctttgaatctggccttcgaacatcatgtcggcactcaaacagttttggattttgaagcatttcagattttggattttcggatgagggatg------ctGTATTATCTTCTGAATGAGGCCACTCATTCAGGAAAGCCCAGAGCTTGGGGACGTGGAGCTGCAGACCAAAGAGGTGATTTCTGTAGTGGCTTTCAGTGCGGAAGGGCCTACAAAGTGGTTTAAAGCAAGCCACAAAATAGGAAACCCAATATTTAGCTAATGGAACTCTGATAAAACCTGCTCAAGATGTCTGTCTCT-ACTAATTCAGATGGAGCCAAGCCAAAGCATCATTATTATTTTAAA--------------AAGGCACCAATCCCTCTGCAAAAGCACTGAATTATATCATGATACAATCATCAATTGTACCATGAATCACCATCAGCGGTggtcttttagggatatgaagaaggggttttcacaatacatcgcatgacacaccatcttccaaa---tctctaaacatttctctccac-agcccagtcctctccatagttgtccaaatccc--tccctcttttctcttgttgtctccaaaactcaaaaccatgctctgactttctatatcccgccctccccttcttggaccatctgggaagccccctgcttccccagggtgtcccctcctccccttctggga-tcagtcatctttcctcaaatggaccagttcggcctctcttagtttctccaactctgcatctcaacctttctcccttcactacacaataatgtccaggaggcaaagagcccacaaacctgggaacctcc--ctttccagaaggg-aggttctggaatgactacaaatatttggttatgattttcttccctgccacGCCTGTTTTCATGGGCAGTGCTGAGCCCCGGTCCTGGCAGAGCTCAGAA-CCAGGCTCTCATGAGC-TGGGGCAAGTGGGGCCTAGGGAACCTCTGGGTTGAGGACCTTGCACCCCACTCTGCAGC------TGCCCTG
s gorGor5.CYUI01015946v1       353858 1349 -    378907 CGGGGCTGCTGTGCCATTGCTGGAAACTTCTCTATGGAGA--------GAACCAAGTACTTCTA-CCTGTAGCATTTTCCCTGGCTGGAATCCTGCAATTATCACAGTAGCCTGAGATCCAAGAAGGCAGGGCAGGAGCATCCTGTCCCCTTCCCAGCAGGTGCAA-GGGAGGCTGGGGGGTGAGGCACA----------------AGCCAGTG-GGAGGGTGAGGAGCAGGAGGGATGCATGGTGAGCCTCTGTTGACTGCTTGCTGCCTCAGCTGGAAGGTCAGGACCCAATGTCTATTACAGGTTA------A-----ATTA-----------------cagaagtatttcagattttgga----tttttttcagattttgg------------------------------------aattcgaaaatctgaaatccaaaatgctccaatgagcatttcctttgaatctggccttcgaacatcatgtcggcactcaaacagttttggattttgaagcatttcagattttggattttcggatgagggatg------ctGTATTATCTTCTGAATGAGGCCACTCATTCAGGAAAGCCCAGAGCTTGGGGACATGGAGCTGCAGACCAAAGAGGTGATTTCTGTAGTGGCTTTCAGTGCGGAAGGGCCTACAAAGTGGTTTAAAGCAAGCCACAAAATAGGAAACCCAATATTTAGCTCATGGAACTCTGATAAAACCTGCTCAAGATGTCTGTCTCT-ACTAATTCAGATGGAGCCAAGCCAAAGCATCATTATTATTTTAAA--------------AAGGCACCAATCCCTCTGCAAAAGCACTGAATTATATCATGATACAATCATC-ATTGTACCATGAATCACCATCAGCGGTGGTCTTTTAGGGATATGAAGAAGGGGTTTTCACAATACATTGCATGACACACCATCTTCCAAA---TCTCTAAACATTTCTCTCCAC-AGCCCAGTCCTCTCCATAGTTGTCCAAATCCC--TCCCTCTTTTCTCTTGTTGTCTCCAAAACTCAAAACCATGCTCTGACTTTCTATATCCTGCCCTCCCCTTCTTGGACCACCTGGGAAGCCCCCTGCTTCCCCAGGGTGTCCCCTCCTCCCCTTCTGGGA-TCAGTCATCTTTCCTCAAATGGACCAGTTCGGCCTCTCTTAGTTTCTCCAACTCTGCATCTCAACCTTTCTCCCTTCACTACACAATAATGTCCAGGAGGCAAAGAGCCCACAAACCTGGGAACCTCC--CTTTCCAGAAGGG-AGGAGA-GAGGTGACTACAAATATTTGGTTATGATTTTCTTCCCTGCCACGCCTGTTTTCATGGGCAGTGCTGAGCCCCAGTCCTGGCAGAGCTCAGAA-CCAGGCTCTCATGAGC-TGGGGCAAGTGGGGCCTAGGGAACCTCTGGGTTGAGGACCTTGCACCCCACTCTGCAGC------TGCCCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22787897 1340 - 121039945 CAGGGCTGCTGTGCCATTGCTGGAACGTCCTCTTTGGAGGAACTTTGTGTACCAAGTACTTCTACCCTGTAGCATTTTCCCTGGCTGGAATCCTGCAATTGTCACAGTGGTCCAAGATCCAGGAAGGCAGGGCGGGAGCATCATGCCCGCTTTCCAGCAGGTGCAAGGGGAGGCTGGGGGCTGATGCACAAGTCCAGCTAGCAGGGAGCCCGTG-GGAGGGTGAGGGGTGGGAGGGGTGCATGGAGAGCCTCTATTGGCTGCTCACTGCCTTAGCTGGCAGGTCAGGACCCAATTGCAATTCCAGGATACAATACA-----ATTA-----------------cagaagtattttggattttagatttttttttttcagattttgg------------------------------------aatttgaaaatctgaaatccaaactgctccaatgatcatttcctttgaacctggcctttgagcatcctgtcggcactcaaacagttttggattttgaaccatttccaattttggattttcggattagggatg------ctATATTATCTTCTGAACGAGGCCACTCATTCAAGAAACCCCAGAGCTTGGGGAGATAGAGCTGCAGGCCAAAGAGGTGATTTCTGAGGTGCCTCCCACTGTGGAAAGGCCTACAAAGTGGTTTCAGGCAACCCAGAAAATAGGAAACCCAATATTTAGCTAACGGAACATGAATAAAGTCTGCTGAAGATGTTTGCCT----GTAATTTAAATGGAGCCAAGCCAATGCGTTACTAAAA---AAAA--------------AAGACACCAATCTCTCTGCAAAAGCACTGA-----------------------ATTGTACCATGTAT---CATCAGTGGTGGTTTTCTAGGGATATGAAGAAGGGGTTTTCACAATACATCACATGATACACTATCTCCCAAA---TCTCTAAACTTTTCTCTCCACAAGCCCAGTCCTT----TAGTTATCCAAATCCC--TCCCTCTTTTCTCTTGCTGTCTCCAAAACTCAGAACTGTGCTCTGACTTTCTGCATCCTGCCC-CACTTTCTCGGCCTCCCTGGAAAGCCCCCCACTGCCCCAGGGTGTCCCCTCTTCCCCTCCTGGGGTTCCCCCATCTTTCCTCAAGTGGACC----------CTCTTAGTTTCTCTAACTCTGCATCTCAACCTTTCTGCCTTCACTACACAATAATGTCCAGGAGGCCAAGAGCCCACAAACAAGGGACCCTCC--CTTTCCAGAAGGG-AGAA---GAGGTGACTACAAATATTTGGTTATAATTTTTTTCCCTGCCACACCTGTTTCCACAGGCAGTGCTGAGCCCCAGTCCTGGCAGATCTCAGAATCCAGGCTCTCATGAGC-CAGGGCAAGTAGGTCCCAGGGAGCCTCTGGGTTGAGGACATTGCATCCCACTCTGCAGc------tgccctg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106465145 1322 - 171882078 CGGGGCTGCTGTGCCATTGCTGGAATCTGCTCTATGGAGA--------GTACTGAGTATTTCTA-CCTGTAGCACTTTCCCTGGCTGGAATCCTGCAATTGTCACAGTGGCCCAAGATCCAAGAAGGCAGGGCAGAAGCATCGTGTCCCCTTCCCAGCGAGTGCAA-GGGAGGCCGGGGGGTGATGCACA----------------AGCCTGTG-GGAGGGTGAGGGGCAGGAGGGGTGCATGGTGAGCCTCTGTTGACTGCTTGCTGCGTCAGCTGGAAGGTCAGGACCCAATGTCTATTACAGGTTA------A-----ATTA-----------------cagaagtatttcagatttcaga----ttttttacagattttgg------------------------------------aattcgaaaatctgaaatccaaaacgctccaataagcatttcctttgaacctggccttcgaacatcatatcggcgctcaaacagttttggattttgaagcatttcagattttggattttcggatgagggatg------ctGTATTATCTTCTGAATGAGGCCACTCATTTAGGAAAGCCCAGAGTTTGGGGACATGGAGCTGCAGGCCAGAGAGGTGATTTCTGAGGTGGCTTCCAGTGTGGAAGGGCCTCCAAAGTGGTTTAAGGCAAGCCACAAAATAGGAAACCTAATATTTAGCTAATGGAACACTGATAAAACCTGCTCAAGATGTCTGTCT---ACTAACACAAATGGAGCCAAGCCAATGCATTATTATCATTTGAAA--------------AAGGCACCAGTCCCTCTGCAAAAGTACTGA-----------------------ATTGTATCGTGAAT---CATCGCTGGTGGTTTTTTAGGGATATAAAGAAGGTGTTTTCACAATAGATCGCTCAACACACTATCTTCCAAA---TCTCTAAACATTTCTCTCCCC-AGCGCAGTCTTCTCCATAGTTGTCCAAATCCC--CCCCTCTTTTCTCTTGTTGTCTCCAAAACTCAAAACCATGCTCTGACTTTCTGTATCCTGCCCTCCCCTTCTTGGACCACCTGGGAAGCCCCCTGATTCCCCAGGGTGTCCCCTTCTTCCCTCCTGGGA-TCCCTGATCTTTCCTCAAATGGAGCAGTTTGGCCTCTCTTAGTTTCTCCAACTCTGCATCTCAACCTTTCTTCCTTCACTACACAATAATGTCCAGGAGGCAAAGAGCCCACAAACCAGGGAACCTCC--CTTTCCAGAAGGG-AGGAGA-GAGGTGACTACAAATATATGGTTATGATTTTCTTCCCTGGCATGACTGTTTCCATGGGCAGCGCTAAGCCCCAGTCCTGGCATTCCTCAGAA-CCAGGCTCTCTTGAGC-TGGAGCAAGTGGGGCCTAGGGAGTCTCTGGGTTGAAGATCTTGCGTACTACTCTGCAAC------TGCCCTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20308624 1324 -  24206276 CGGGGCTGCTGTGCCATTGCTGGAATCTGCTCTATGGAGA--------GTACTGAGTACTTCTA-CCTGTAGCACTTTCCCTGGCTGGAATCCTGCAATTGTCACAGTGGCCCAAGATCCAAGAAGGCAGGGCAGAAGCATCGTGTCCCCTTCCCAGTGGGTGCAA-GGGAGGCCGGGGGGTGATGAACA----------------AGCCTGTG-GGAGGGTGAGGGGCAGGAGGGGTGCATGGTGAGCCTCTGTTGACTGCTTGCTGCCTCAACTGGAAGGTCAGGACCCAATGTCTATTACAGGTTA------A-----ATTA-----------------cagaagtatttctgatttcaga--ttttttttacagattttgg------------------------------------aattcgaaaatctgaaatccaaaatgctccaatgagcatttcctttgaacctggtcttcgaacatcatatcggcgctcaaacagttttggattttgaagcatttcagattttggattttcggatgagggatg------cCGTATTATCTTCTGAATGAGGCCACTCACTTAGGAAAGCCCAGAGTTTGGGGACATGGAGCTGCAGGCCAAAGAGGTGATTTCTGAGGTGGCTTCCAGTGTGGAAGGGCCTCCAAAGTGGTTTAAGGCAAGCCACAAAATAGGAAACCTAATATTTAGCTAATGGAACACTGATAAAACCTGCTCAAGATGTCTGTCT---ACTAACACAGAtggagccaagccaacgcattattatcatttgaaa--------------aaggcaccaatccctctgcaaaagcactga-----------------------attgtatcatgaat---catcgctggtggttttttagggatataaagaaggtgttttcacaatagatcacacaacacactatcttccaaa---tctctaaacatttctctcccc-agcccagtcttctccatagttgtccaaatccc--ccgctcttttctcttgttgtctccaaaactcaaaaccatgctctgactttctgtatcctgccctccccttcttggaccacctgggaagccccctggttccccagggtgtcccctcgtcccctcctggga-tccctgatctttcctcaaatggagcagtttggcctctcttagtttctccaactctgcatctcaacctttcttccttcactacacaataatgtccaggaggcaaagagcccacaaaccagggaacctcc--ctttccagaaggg-aggaga-gaggtgaCTACAAATATGTGGTTATGATTTTCTTCCCTGGCATGACTGTTTCCATGGGCAGTGCTAAGCCCCAGTCCTGGCATACCTCAGAA-CCAGTCTCTCTTGAGC-TGGAGCAAGTGGGGCCTAGGGAGTCTCTGGGTTGAGGATCTGGCATACTACTTTGCAAC------TGCCCGG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       268970 1320 +   4111199 CAGGGCTGCTGTGCCATTTTTGGAATCTGCTCTATGGAGA--------GTATTGAGTACTTCTA-CCTGTAGCACTTTCCCTGGCTAGAATCCTGCAATTGTCACAGTGGCCCGAGATCCAAGAAGGCAGGGCAGAAGCATCGTGTCCCCTTCCCAGTGGGTGCAA-GGTAGGCCGGGGTGTGATGCACA----------------AGCCTATG-GGAGGGTGAGGGGCAGGAGGGGTGCATGGTGAGCCTCTGTTGACTGCTTGCTGCCTCAGCTGGAAGGTCAGGACCCAAAGTCTATTACAGGTTA------A-----ATTA-----------------cagaagtatttcagatttcaga----ttttttacagactttgg------------------------------------aattcgaaaatctgaaatccaaaatgctccaatgagcgtttcctttgaacctggccttagaacatcatatcggcgctcaaacagttttggattttgaagcatttcagattttggattttcagatgagggatg------ctGTATTATCTTCTGAATGAGGTCACTCATTTAGGAGAGCCCAGAGTTTGGGGACATGGAGCTGCAGGCCCAAGAGGTGATTTCTGAGGTGGCTTCCAGTGTGGAAGGGCCTGCAAAGTGGTTTAAGGCAAGCCACAAAATAGGAAACTCAATATTTAGCTAATGGAACACTGATAAAACCTGCTCAAGATGTCTGTCT---ACTAACACAGATGGAGCCAAGCCAATGCATTATTATCATTTTAAA--------------AAGGCACCAATCCCTCTGTAAAAGCACTGA-----------------------ATTGTATCATGAAT---CATCGGTGGTGGTTTTTTAGGGATATAAAGAAGGTGTTTTCACAATAGCTCGCACGACACACTATCTTCCAAA---TCTCTAAACATTTCTCTCCCC-AGCCTAGTCCTCTCCATAGTTGTCCAAATCCC--CCC--CTTTTCTCTTGTTGTCTCCAAAACTCAAAACCATGCTCTGACTTTCTTTATCCTGCCCTCCCCTTCTTGGACCACCTGGGAAGCCCCCTGGTTCCCCAGGGTGTCCCCTCCTCCCCTCCTGGGA-TCCCTGATCTTTCCTCAAATGGACCAGTTTGGCCTCTCTTAGTTTCTCCAACTCCGCGTCTCAACCTTTCTTCCTTCACTACACAATAATGTCCAGGAGGCAAAGAGCCCACAGACCAGGGAACCTCC--CTTTCCAGAAAGG-AGGAGA-GAGGTGACTACAAATATATGGTTATGAGTTTCTTCCCTGGCACCACTGTTTCCAAGGGCGGCGCTGAGCCCCGGTCCTGGCAGACCTCAGAA-CCAGGCCCTCATGAGC-TGGGGCAAGTGGGTCCTAGGGAGCCTCTGGGTTGAGGATCTTGAGTACTACTCTGCAAC------TGCCCTG
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530           29686832 1351 +  36342412 TAGGGCCACTGCACCACTGCTGAAACCTTCTCTATGAAGGGACTTTTTTAACTAAGTACTTCTACCTTGTACCGCTTTCCC---------CCCTGTGACTATTATAGTGGCCCAAGATGCAGGAAGGCAGAACAGAGGTATCATGCCCACTTTCCAGCAGGTGCAA-GGGAGGCAGTCTCCT----CTTC----------------AGCCAGTGAGGAGACTGAGGGGCAGGATGGGGGAGCAGCGGGCCTCTGCTGATGGCTCGCTGCCTCGGCTGCCAGGACAGGACCCAAT-TTTAATCCATAttg------attgtccttatctgaaatgcttgggatcagaagtgatttgaatctcagg----gttttttttttttttggaatattttaaattatatttaccagctgagcatccctaatctgaaaatctgaaatcttaaatgttccaataagcatgtcctttgaacctgacctttgagtatcatgttagtactgataaatttttgggtttgggagaatttaggattaggaatttttgtattagagatgctcaacctgTATTATCTTCT------------CCGTTCAGGAGACCCCAGGGTTGGGGGAGATGGAGCCGCAGGCCAAACAG--GATTTCTGAGGCTCCTCCCACTGCAGAAGGGCCT---AAGTAG-TTAAAGCAGCCCACAAAATAGGAAACCCAGTATTTAGCTAATGGAACACAGACAGAACCTACTAAAGATGTCTGTGCCTGACTAATTCAATTGGAGCCAAATCAAC------TTGGTATCTGAAAAAAAAAAGAAAAAGAAGACACCAATCTGACTGCAAAAGCCCTGA-----------------------AATGTAACATGAAT--GGGCCAGTGGTGGTTTCTTAGGGAGACGGAGGAGGAGTTTTCGTGATATATCACACAACAAAACATCTCCCCAACCTCCTCTAGACA-TTCTCTCCACAAGCCCTGCCCTTCCACTAGTTGCCCACATCTCTGCTCCTCTTTTCTCTTGCTCTCT------GTTCAAACTGTTCT----CTTTCTGTATCCCGTCCTTCCCTTCTTAGCCCTGCTGGGGAGCCCCCTACTTGCCCAGAGCCTCTCCTCCTCCTCTCCTGGGG-TCCTCCCTCGTTCCTCCAATGGATC--------------------CTCCAACTCTGCATCTCAACTTCTCTCCCTTCCCTCCCCAGTAATGTCCAGGAGGCTGAGAAGCCACAAACAAT---TCCTCCCGCTTATCAGAAGGGAAAGAGG-GAGGTGACTAGAAATGTTTGGTTATAATTTTCTTCCTGGACACACTTGTTTACATGGGTAGCATTGAGTCCTAGTCCCAGAAGTTCCCAGAA-CCCAGGTCCCAGGAGCATGCGGCA-----GGCCCAGGGAGCCTCT--GCAGAGGACCTTGCATCCCTATCCATAGCCAGTCTTGCCCTG
i otoGar3.GL873530          N 0 T 96407
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=1500.000000
s hg38.chr15_KI270850v1_alt     63201 1 +    430880 C
s gorGor5.CYUI01015946v1       355207 1 -    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               22789237 1 - 121039945 c
i nomLeu3.chr6              C 0 N 0
s macFas5.chr7              106466467 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20309948 1 -  24206276 C
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       270290 1 +   4111199 C
i colAng1.NW_012116021v1    C 0 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=223846.000000
s hg38.chr15_KI270850v1_alt     63202 179 +    430880 TGATTTggctca-tgcaacctct-cctcctgggctcaagcgatccttctacatcggtctcccaagtagctgggatttgggctaccacgtttggctaatttttgtatcttttagtacagatggggtttcacctgtagcccaggctggtctcgaa-tcctgggctctagtgatctaccctcctc
s gorGor5.CYUI01015946v1       355208 180 -    378907 TGATTTggctca-tgcaacctct-cctcccgggctcaagcgatccttctacatcggtctcccaagtagctgggatttgggctaccacgttgggctaatttttgtatcttttagtacagatggggtttcacctgtagcccaggctggtctcgaactcctgggctctagtgatctaccctcctc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101773140 182 + 121039945 TGATTTggctcactgctacctctgcctcccgggctcaagcaatccttctacctcggcctcccaagtagctgggatttgggctaccacgtttggctaatttttgtatcttttagtgcagacggggtttcacctgtagcccaggctggtctcgaactcctgggcttgagtgatctaccctcctc
i nomLeu3.chr6              N 0 N 0
s macFas5.chr7              106466468 182 - 171882078 TGATTTggctcactgcaacctctgcctcaccggctcaagtgatccttctacctcggcctcccaagtagctgggatttgggctaccatgcttggctaatttttgtatcttttagtacagacggggtttcccctgtagcccaggctggtctcgaactcctggactcgagtgatttatcctcctc
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20309949 182 -  24206276 TGATTTggctcactgcaacctctgcctcaccggctcaagtgatccttctacctcggcctcccaagtagctgggatttgggctaccatgcttggctaatttttgtatcttttagtacagacggggtttcccctgtagcccaggctggtctcgaactcctggactcgagtgatttatcctcctc
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       270291 182 +   4111199 TGATTTggctcactgcaacctctgcctcacgggctcaagtgatccttctacctcggcctcccaagtagctgggatttgggctaccatgcttggctaatttttgtattttttggtacagacggggcttcacctgtagcccaggctggtcttgaactcctggacttgactgatttaccctcctc
i colAng1.NW_012116021v1    C 0 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=151617.000000
s hg38.chr15_KI270850v1_alt     63381 172 +    430880 agcctcccaaagtgctgggattacaggtgtgagccactgcgcccggccTTgtgccagcttttaaatatcaacaaggacaaattagagaacagtggaagagggtgagcagcatgatgaggtgatacagaaataatttcacatgaagaacTGGGCATGCCTGGC---TTTTTTTTTT
s gorGor5.CYUI01015946v1       355388 175 -    378907 agcctcccaaagtgctgggattacaggtgtgagccactgcgcccggccTTgtgccagcttttaaatatcaacaaggacagattagagaacagtggaagagggtgagcagcatgatgaggtgatacagaaataatttcacatgaagaactgggcatgcttggcctTTTTTTTTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106466650 172 - 171882078 agcctcccaaagtgctgggattacaggtgtgagccgctgtgcctggccTTGTGCCAGCTTTTAAATATCAACAAGGACAGATTAGAGAACAGTGGAAGAGGGTGAGCAGCATGATAAGGTGATACAGAAATAATTTCACATGAAGAACTGGGCATGCTTGAC---Cttttttttt
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20310131 172 -  24206276 agcctcccaaagtgctgggattacaggtgtgagccactgcacccggccTTGTGCTAGCTTTTAAATATCAACAAGGACAGATTAGAGAACAGTGGAAGAGGGTGAGCAGCATGATGAGGTGATACAGAAATAATTTCACATGAAGAACTGGGCATGCTTGAC---Cttttttttt
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       270473 171 +   4111199 agcctcccaaagtgctgggattacaggtgtgagccgctgtgcctggccTTgtgccagcttttaaataccaacaaggacagattagagaacagcagaagagggtgagcagcatgatgaggtgatacagaaataattt-acatgaagaacTGGGCATGCTTGAC---TTTTTTTTTT
i colAng1.NW_012116021v1    C 0 I 326
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=2184.000000
s hg38.chr15_KI270850v1_alt     63553 4 +    430880 TTTT
s gorGor5.CYUI01015946v1       355563 4 -    378907 TTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106466822 4 - 171882078 tttt
i macFas5.chr7              C 0 I 17
s chlSab2.chr29              20310303 4 -  24206276 tttt
i chlSab2.chr29             C 0 I 337
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       270644 326 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=6254.000000
s hg38.chr15_KI270850v1_alt     63557 40 +    430880 AAGCTATTCTGGGTTGGATGCTGAGGCTCACACCTGTAAg
s gorGor5.CYUI01015946v1       355567 40 -    378907 AAGCCATTCTGggttgggtgctgaggctcacacctgtaag
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106466843 32 - 171882078 AAGCCATTCTGggctgggcacaggggctcatg--------
i macFas5.chr7              I 17 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       270644 326 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29              20310307 337 -  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=1200.000000
s hg38.chr15_KI270850v1_alt     63597 2 +    430880 cc
s gorGor5.CYUI01015946v1       355607 2 -    378907 cc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102101939 2 + 121039945 cc
i nomLeu3.chr6              N 0 C 0
s macFas5.chr7              106466875 2 - 171882078 cc
i macFas5.chr7              C 0 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       270644 326 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29              20310307 337 -  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=910.000000
s hg38.chr15_KI270850v1_alt     63599 1 +    430880 t
s gorGor5.CYUI01015946v1       355609 1 -    378907 t
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102101941 1 + 121039945 t
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106466877 1 - 171882078 t
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20310644 1 -  24206276 t
i chlSab2.chr29             I 337 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       270644 326 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=10403.000000
s hg38.chr15_KI270850v1_alt     63600 8 +    430880 gtaatccc
s gorGor5.CYUI01015946v1       355610 8 -    378907 gtaatccc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102101942 8 + 121039945 gtaatccc
i nomLeu3.chr6              C 0 I 1
s macFas5.chr7              106466878 8 - 171882078 gtaatccc
i macFas5.chr7              C 0 I 291
s chlSab2.chr29              20310645 8 -  24206276 gtaatcct
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       270970 8 +   4111199 gtaatcct
i colAng1.NW_012116021v1    I 326 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=391319.000000
s hg38.chr15_KI270850v1_alt     63608 348 +    430880 agcactttgggaggccgaggtgggtggatcacctgaagtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaaattagctggaattggtggcatgtgcctgtaattccagctac-tcgggcagctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgagctgatatcgtgccattgcactccagcct-gggcaacaagagtgaaactctgcctc-aaaaaaaaaaaaaaaaaagaaagaaagaaaAGAAAATATATCTATGCACCAGAGCTCAACACTAGGTTAGGAGCATTTCTGAGATTTGGAGCTATT
s gorGor5.CYUI01015946v1       355618 349 -    378907 agcactttgggaggccgaggtgggtggatcacctgaagtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaaattagctggaattggtggcatgtgcctgtaattccagctac-tcgggcagctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgagctgatatcgtgccattgcactccagcct-gggcaacaagagtgaaactctgcctcaaaaaaaaaaaaaaaaaaaaaaagaaagaaaagaaaaTATATCTATGCACCAGAGCTCAACACTAGGTTAGGAGCATTTCTGAGATTTGGAGCTATT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102101951 345 + 121039945 ttcactttgggaggtcgaggtgggcggatcacctgacgtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaagatacaaaaaattagccaggcgtggtgaggtgtgcctgtaattccagctacagtgggcagctgaggcaggagaatcgcttgaacctgggaggtggaggttgcggtgagctgatatcgcgccattgcactccagcctggggcaacaagagtgaaactctgcctc------aaaaaaaaaaaaaagaaaaaagaaaagaaaATATATCTACGCACCAGAgctcaacattaggttaggtgcatttctaagatttggagctatt
i nomLeu3.chr6              I 1 C 0
s macFas5.chr7              106467177 336 - 171882078 agcactttgggaggccgaggcaggtggatcacctgaagtcaggagttcgagaccagcctagtcaacatggtgaaaccccatttctactaaaaatacaatacattagccgggcatggtggcgtgtgcttgtaattccagctac-tcgggcagctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgagctgatatcggaccattgcactccagcct-gggcaac--gagtgaaactccgcttc------caaaaaaaaaaagaaga-----agaagagaaTATATGTACGCACCAGAGCTCAACATTAGCTTAGGAGCATTTCTGAGATTTGGAGCTATT
i macFas5.chr7              I 291 C 0
s chlSab2.chr29              20310653 335 -  24206276 agcactttgggaggccgaggcaggtggatcacctgaagtcaggagttcgagaccagcctagtcaacatggtgaaaccccatttctactaaaaatacaatacattagccgggcatggtggcatgtgcttgtaattccagccac-tcgggcagctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgagctgatatcggaccattgca-tccagcct-gggcaac--gagtgaaactctgcttc------caaaaaaaaaaaagaaa-----agaagagaaTATATGTACGCACCAGAGCTCAACATTAGCTTAGGAGCATTTCTGAGATTTGGAGCTATT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       270978 326 +   4111199 agcgctttgggaggccgaggcaggtggatcacctgaagtcaggagttcaagaccagcctggtcaacatggtgaaa-ccgatctccactaaaaatacaaaaaattagccgggcatggtggtgtgtgcttgtaattccagctac-tcgggcagctgaggcaggagaattgcttcatcctgggaggtggaggttgcagtgagctgataccgcccca-tgcactccagcct-gggcaac--gagtgaaactctgcctc------caaaaaaaaaa-------------aagagaaTATATGTATGCACCAGAGCTCAACATCAGGTCAGGAGCATTTCTGAGATTTGGAGCTATT
i colAng1.NW_012116021v1    C 0 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=285029.000000
s hg38.chr15_KI270850v1_alt     63956 185 +    430880 CAACCATGGAAGTTCCTGGCACATACATCAGGTATTCACAATACCCTTTCTCAGGTGTTTGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGGCAGTCATTTGCATCTTTGCATTTTTTTTGGGGGGGGGGTTGTGGGGGTATATACCATACCAGAttttttaaaaattgacat
s gorGor5.CYUI01015946v1       355967 185 -    378907 CAACCACGGAAGTTCCTGGCACATACATCAGGTATTCACAATACCCTTTCTCAGGTGTTTGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGGCAGTCATTTGCATCTTTGCTTTTTTTTGGGGGGGGGGGTTGTGGGGGTATATCCCATACCAGATTTGTAAAAAATTGACAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102102296 182 + 121039945 caacaatggaaGTTCCTGGTACACACATAAGGTATTCACAATACCCTTTCTCAGGTGTTTGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGGCAGTCATTTGCATCTTTGCATTTTTTTGGTGGGGGGG---GTGGGGGTGTATCCCATACGAGATTTTTTAAAAATTGACAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106467513 181 - 171882078 CAGCAATGGAAGTTCCTGGTACATACATCAGGTATTCACAATACCCTTTCTCAGGTGTTTGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGACAGTTATTTGCATCTTTGCATTATTTTTGGGGGTGGG---GTGGGGGCATATCCCATACTATATTT-TAAAAAATTGACAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20310988 181 -  24206276 CAGCAATGGAAGTTCCTGGTACATACATCAGGTATTCACAGTACCCTTTCTCAGGTGTTTGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGACAGTTATTTGCATCTTTGCATTATTTTTGGGGGTGGG---GTGGGGGCATATCCCATACTATATTT-TAAAAAATTGACAT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       271304 181 +   4111199 CAGCGATGGAAGTTCCTGGTACACACATCAGGTATTCACAATACACTTTCTCAGGTGTTTGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGACAGTCATTTGCATCTTTGCATTTTTTTGGGGGGTGGG---GTGGGGGCATATCCCATACTAGATTT-TTCAAAATTGACAT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113945447 168 - 132174527 CAACAATGGAAGTTTTTGTTACACACATCAGGTATTCATAATACCCTTTCTCAGGTATTTGGTCACTGCT-GTGAGCCTGCCTGCGTCAGTGTTTCCCAAATGGCAGTC--------CTTGGCATTCTTTTTTTGGGTGGG-------GGGTGTATCCCGTGCCAGATTT-TTAAGAGCTGACAT
i calJac3.chr10             N 0 I 542
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=331303.000000
s hg38.chr15_KI270850v1_alt     64141 251 +    430880 taaaaatacatgtataaaatgtgtaaagt-----------------------------------gcactaa----tctaaagtgcactggatgtattttttattgatgtacatacttttgttatccatcacccaggtcaaaatacagaatcagcaccacagagggttccctcctcctccttcccagccaataatcttctcctcctacctaaccaactgttcttacttcaagcactgtcaactagtattttacattcttgaactgcatataaaGTGTCTCAAGTttcactt
s gorGor5.CYUI01015946v1       356152 250 -    378907 TAAAAATACATGTATAAAATGTgtaaagt-----------------------------------gcactaa----tctaaagtgcactggatgtattttttattgatgtacatacttttgttatccatcacccaggtcaaaatacagaatcagcaccacagagggttccctcctcctccttcccagccaataatcttctcctcctacctaaccaactgttcttacttcaatcactgtcaactagta-tttacattcttgaattgcatataaaGTGTCTCAAGTtttactt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102102478 245 + 121039945 TAAAAATACATGTTTAAAATATgtaaagt-----------------------------------gca---------ctaaagtgcactggatgtattttttattcatgtacatactttagttatccatcacccaggtcaaaatacagaaccagcaccacagagggttcccacctcctcctttccacccaataatcttctcctcctacctaacc-actgttcttacttcaatcactgtcaactagtattttacgttcttgaactgcatataaaGTGCCTCAATTTTTACTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106467694 248 - 171882078 TAAAAATACATGTTTAAAATGTgtaaagt-----------------------------------gcactaa----tcttaagtgcactggatgtatttttttttcatgtatacacttttgttatccatcacccaggtcaaaatacagaaccagcaac-caga-ggttccctcctcttccttcccagtcaataatcgtcccctcctacctaacc-actgtcctTacttcagtcactgtcaactagttttgcacgttcttgaactgcatataaagtgtctcaatttttactt
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20311169 249 -  24206276 TAAAAATACATGTTTAAAATGTgtaaagt-----------------------------------gcactaa----tcttaagtgcactggatgtattttttattcatgtatacacttttgttatccatcacccaggtcaaaatacagaaccagcacc-cagagggttccctcctcttccttcccagtcaataatcgtcccctcctacctaacc-actgttctTacttcagtcactgtcaactagttttgcacgttcttgaactgcatataaagtgtctcattttttactt
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       271485 249 +   4111199 TAAAAATACATGTTTAGAATGTgtacaat-----------------------------------gcactaa----tcttaagtgcactggatgtattttttattcatgtatattcttttgttatccatcacccaggtcaaaatacagaaccagcacc-cagagggttccctcctcttccttcccagtcaataatcgtcccctcctacctaaac-actgttcttacttcagtcactgtcaactagttttgcaagttcttgaactgcatataaaGTGTCTCAATCTTTACTT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113946157 213 - 132174527 TAAAAATACATGTTTAAAACGTGTAAAGTTACTGGCTGTGGAAAAGAAAAATAAAAAAAGAAAAacaataaaacgtgtaaagtgcactagatgtatttttcattcatgtatatgcttttgttatccacctcccaggtcaaaatacagaaccagcaccccagagggttctctcctcctcc--------------------------------------------------------------------------tccTTGAAGTGTACTTCAAGAAG---AGTTtttactt
i calJac3.chr10             I 542 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=2316273.000000
s hg38.chr15_KI270850v1_alt     64392 1135 +    430880 aacacttttcttgaaatacacttgtttttt------gccactttttatttgacctaagaagtaacattaatgaaacaatgatttgacgtgataggcatttccctcctaatgagcactaaaacacttaactatttgaaaaaagaagtttctccgtgtaccagctaatatattctcctcggccgccgttggtacacggaccacattttgTTTCTCAAAGCAATCCGATGATTTCTGAGGTCCTTTGCAGCTTGAAGACGGAACGAC--TGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCCATAGCGCCGTGCATCCATCCAACACTTGTTTAATACCTATATTTAATACCTAATACCTTAGAGTGTCCTAGGCTGTGGACACACAAGACTAAACCCCACTTCCTGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAATGCTACAGCTCAGGTAACCACGAGCACACAGAGAAAGGGCAGTTTCTAGAAACAGGGCGGAGAGGAGACCGT--GAGTGGGCATTTCCCAGAGCAGTCTCTGCCAGCCACCCTGCTGTGATCACTTTGCCACAGAGCAGCCCCGGCGGT----------CAACCTCAGCCTCCCTTAGCAACCTGAGCGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGAGCGGGATGGGCAGCTCTGCCGTGCAATCCCAGCTCGCAGCCCTT-GCTCCGCGTGTACTCACGGGAGGACTCGCAGACGTTACTGCCTTCTTGCGTGCCCCGGCCACCCCCGGGCGGCTTGTAGCCGGTGCGCGGGGTGGCTGGGGCTACGTGCAGAGCTGTCGCGGAGCCGGAACAGCAGCGGTGAAGCCCCTCGGCTCGGCCGAGACCGCCGTGCCCATTGCTCGCCTCGGTTgccgccgctttagccgcagccgctgctgccgccgccgGGGGAGAGGCAGCCTA-TTGTCTTTCTCCGCGGCGAAGGTGAGGAGCTGTCTCGGCTCGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGGAAGTTTTGTGATTTGAGGA-GGGGTCGGGATGCGGAGCGCGGCCCGT-CCCCTGCGGCCGCT
s gorGor5.CYUI01015946v1       356402 1135 -    378907 aacacttttcttgaaatacacttgtttttt------gccactttttatttgacctaagaagtaacattaatgaaacaatgatttgacgtgataggcatttccctcctaatgagcactaaaacacttaactatttgaaaaaagaagtttctccgtgtaccaactaatatattctcctcggccgccgttggtacacggaccacattttgTTTCTCAAAGCAATCCGATGATTTCTGAGGTCCTTTGCAGCTTGAACACGGAATGAC--TGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATCGTGATTCCGCCATAGCGCCGTGCATCCATCCAACACTTGTTTAATACCTATATTTAATACCTAATACCTTAGACTGTCCTAGGCTGTGGACACAGAAGACTAAACCCCACTTCCTGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTGCAGCTCAGGTAACCACGAGCACACAGAGAAAGGGCAGTTTCTAGAAACAGGGCGGAGAGGAGACCGT--GAGTGGGCATTTCCCAGAGCAGTCTCTGCCAGCCACCGTGCTGTGATCACTTTAGCACAGAGCAGCCCCGGCGGT----------CAACCTCAGCCTCCCTTAGCAACCTGAGCGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGAGCGGGATGGGCAGCTCTGCCGTGCAATCCCAGCTCGCAGCCCTT-GCTCCGCGTGTACTCACGGGAGGACTCGCAGACGTTACTGCCCTCTTGCGTGCCCCGGCCACCCCC-GGCAGCTTGTAGCCGGTGCGCGGGGTGGCTGGGGCTACGTGCAGAGCTGTCGCGGAGCCGGAGCAGCAGCGGTGAATCCCCTCGGCTCGGCCGAGACCGCCGTGCCCATTGCTCGCCTCGGTTgccgccgctttagccgcagccgctgctgccgccgccgGGGGAGAGGCAGCCTA-TTGTCTTTCTCCGCGGCGAAGGTGAGGAGCTGTCTCGGCTCGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGGAAGTTTTGTGATTTGAGGA-GGGGTCGGGGTGCGGAGCGCGGCCCGTCCCCCTGCGGCCGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102102723 1140 + 121039945 AACGCTTTTCTTGAAATACACTTGTTTTTT------GCCACTTTTTATTTGAcctaagaaataacattcatgaaacaatggtttgacatgatatgcatttccctcctaatgcgtactaaaacac--aactatttgaaaaaagaagtttcttcgtgcaccaagtaatatgttctcctcggccaccgttggtacacggaccacattttgCTTCTCAAAGCAATCAGATGATTTCTGAGGCCCTTTGCAGCTCGAACACGGAATGAC--TGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCCATAGAGCCGTGCATCCACCCAACACTTGTTTAATACCTATATTTAATACCTAACACCTTAGACTGTGCTAGGCTGTGGACACAGAAGACTAAACCCCACTTCCTGAGTTGAAGTGGGGGAAATAGGGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTACAGCTCAGGTAACCACTAGCGCACAGAGAAAGGGCGGTTTCTAGAGACAGGGCGGAGAGGAGACCATGGGGGTGGGCATTTCCCAGAGCAGCCTCTGCCAGCCACCCTACTTTGATCACTTTGCCACAGAGCAGCAGCCGCAGTCAACCTCAGCCAACCTCAGCCTCCCTTAGCAACCTGAGCGCCCCGCCCAGGTGCCTTACTATTGGTCTCATGGAGCTGGATGGGCAGCTCTGCCGTGCAATCCCAGCTCGCAGCCCTT-GCTCCGCGTGTACTCACGGGAGGACTCGCAGGCGTTACCGCCCTCTTGCGTGCCCCGCCCACCCCCGGGCAGCTTGTATCCGGTACGCTGGCTGGCTGGGGCTATGTGCAGGGCCCGCGCAGAGCCGGAGCAGCAGCGGTGAAGTCCCTGGGCTCAGCCGAGACcgccgtgcccattgctcgcctcggtcgccgccgctttagccgtagcc------gccgccgccAGGGGAGCGGCCGCCTATTTGTCTTTCTCCGCGGCGAAGGTGAGGAGCTGTTTCGGCTGGGCCTGCGGGGGAGCCCCGGGAGCCGCACGGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGGAAGTTTTGTGATTTGAGGA-GGGGTCAGGGTGCGGAGCGCGGCCGGT-CCCCTGCTGCCGCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106467942 1093 - 171882078 aacatttttcttgaagtacacttgtttttt------gccactttttatttgacctaagaaataccattaatgaaacaatggtttgacgtgataggcatttccctcctaatgcgcactaaaacacttaactatttgaaaaaagaagtatctttgtgtatcaactaatatattctcctcggccaccgttggtacacggaccacattttgTTTCTCAAAGCAACCAGATGATTTCTGAGGTCGTTTGCAGCTCGAACACGGAATGACTTTGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCTATACCGCCGTGCATCCATCCAACACTTG-------------TTTAATACCTAATACCTTAGACTGTCCTAGGCTGTGCACACAGAAGACTAAACCTCACTTCCTGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTGCAGCTCAGGTAACCACTGGCACACAGAGAAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACGGT--A--------------AGAGAAGTCTCTGCCAGCCACTCTAATTTGATCACTTTGCCACAAAGCAGCAGTGGCAGT----------CAACCTCAGCCTCCCTTAGCAACCTGAGTGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGGGCGGGATGGGCAGCTCTGCCGTGCAATCCTAGCTCGCAGCCCTT-GCTCCGCGTGTACTCACGGGAGGACTCGCAGGCGTTACCGCCCTCCTGCGTGCCCCGCCCACCCTCGGGC-GCTTGTAGCTGGTGCGCAGG-----CGGGGCTGTGTGCAGGGTCAGCGCGTAGCCCGAGCAGTAGCGGTGAAGCGCCTGGGCTGGGCGGAGACTGCCATGCCGGTTGCTCGCCTCAGTCGCCGCCTCTTTAGCCACCGCC------GCCTCTGCCGGGGGAGCGGCCGCCTA-TTGTTTTTCTGTGCGGCGAAGGTGAGGAGCTGTCTC-----GGCCGGCGGGGGAGCCCCGGGAGCTTCACTGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGCAAGTTTTGTAATTTGAGGA-GGGGTGGGGGTGCGGAGCGCGGCCCGT-CCCCTGCGGCTGCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20311418 1108 -  24206276 aacatttttcttgaagtacacttgtttttt------gccactttttatttgacctaagaaataccattaatgaaacaatggtttgacgtgataggcatttccctcc-aatgcgcactaaaacacttaactatttgaaaaaagaagtatctttgtgtatcaactaatatattctcctgggccaccgttggtacacggaccacattttgTTTCTCAAAGCAaccagatgatttctgaggtcatttgcagctcgaacacggaatgactttgtggtGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCTATAGCGCCGTGCATCCATCCAACACTTG-------------TTTAATACCTAATACCTTAGACTGTCCTAGGCTGTGCACACAGAAGACTAAACCTCACTTCCCGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTGCAGCTCAGGTAACCACCGGCACACAGAGAAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACCGT--GGGTGGGCATTTCCCAGAGCAGTCTCTGCCAGCCACTCTAATTTGATCACTTTGCCACAAAGCAGCAGCTGCGGT----------CAACCTCAGCCTCCCTTAGCAACTTGAGTGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGAGCGGGATGGGCAGCTCTGCCTTGCAATCCTAGCTAGCAGCCCTC-GCTCCGCGTGTACTCACGGGAGGACTCGCAGGCGTTACCGCCCGCCTGCGTGCCCCGCCCACCCTCGGGCAGCTTGTAGCTGGTGCGCAGG-----CGGGGCTGTGTGCAGGGGCAGCGCGTAGCCCGAGCAGCAGCGGTGAAGCGCCTGGGCTGGGCGGAGACTGCCATGCCGGTTGCTCGCCTCGGTCGCCGCCTCTGTAGCCACCGCC------GCCTCTGCT-GGGGAGCGGCCGCCTA-TTGTTTTTCTGTGCGGCGAAGGTGAGGAGCTGTCTC-----GGCCGGCGGGGGAGCCCCGGGAGCTTCACTGTGACAGCGCAACTTAGTTGGCGGAGTTGGGGGAAGTTTTGTGATTTGAGGAGGGGGTGGCGGTGCGGAGCGCGGCCCGTCCCCCTGCGGCTGCT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       271734 1117 +   4111199 AACATTTTTCTTGAAGTGCACTTGTTTTTT------GCCACTTTTTATTTGACCTAAGAAATAACATTAATGAAACAATGGTTTGACGTGATAGGCATTTCCCTCCTAATGTGCACTAAAACACTTAACTATTTGAAAAAAGAAGTATCTTTGTGTGTCAACTAATATATTCTCCTCGGCCACCGTTGGTACACGGACCACATTTTGTTTCTCGAAGCAACCAGACGATTTCTGAGGTCATTTGCAGCTCGAACACGGAATGACTTTGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCTATAGCGCCGTGCATCCATCCAACACTTGTTTAATACCTATATTTAATACCTAATACCTTAGACTGTCCTAGGTTGCGCACACAGAAGACTAAACCTCACTTCCTGAGTTGAAGTTGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTGCAGCTCAGGTAACTACCGGTACACAGAGAAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACCAT--GGGTGGGCATTTCCCAGAGCAGCCTCTGCCAGCCACTCTAATTTGATCACTTTGCCACAAAGCAGCAGCTGCGGT----------CAACCTCAGCCTCCCTTAGCGACCTGAGTGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGAGCGGGATGGGCAGCTCTGCCGTGCAATCCTAGCTCGCAGCCCTT-GCTCCGCGCGTACTCACGGGAGGACTCGCAGGCGTTACCGCCCTCCTGCGTGCCCCGCCCACCCCCGGGCAGCTTGTAGCCGGTGCGTAGA-----CCGGGCTGTGTGCAGGGCCAGCGGGGAGCCGGAGCAGCAGCTGTTAAGCGCTTGGGCTCCGTCGCGACTGCCGTGCCCGTTGCTCGCCTCAGTCGCAGCCTCTTTAGCCACCGCC------G---CTGCCGGGGGAGCGGCAGCCTA-TTGTTTTTCTGCGCGGCGAAGGTGAGGAGCTGTCTC-----GGCCCGCGGGGGAG-CCCGGGAGCCTCACTGTGAGAGCGCAACTTAGTTGGCGGAATTGGGGGAAGTTTTGTGATTTGAGGA-GGGGTGGGGGTGCGGAGCGCGGCCCGT-CCCCTGCGGCCGCT
i colAng1.NW_012116021v1    C 0 I 482
s calJac3.chr10             113946370 1047 - 132174527 aacactttttttgaagtacactttttttttt-----gccactttttatttga------------cattaatgaaacaatggtttgacgtgataggcattcccctcctaatgagcactacaacacttaactatttgaaaaaagaagtttcttcgtgtaccagctaatatattctcctcggccacagttggtacatagattacattttgTTTCTCAAAGCAaccagatgatttctgaggtcctttgcagctcgaacacggaatgactttgtggtGATCTAGTAGC--------CACGGAATGCACTGTCACAATCGTGATTCCGCCATAGCACCGTGCATCCATGCAACACTTG-------------TTTAATACCTAGCAGT---GACTCTGCTAGGCTGTGGACACAGAACACTAAACCCCACTTCCTGATTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCAGGATGTGTGGTTAAGTGCTACAGTTCAGGTAACCACTGGCACACAGAGGAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACCGT--GGGTGGGCATTTCCCAGAGCAGCCTCAGCCGGCCACCCCACTTTGATCACTTTGCCGCC-AGCAGCAGCGGCGGT----------CAACCTCAGCCTCCCTTAGCAACCTGCGTGCCCCGCCCAGGAGCCTTACTATTGGTGTCGTGGAGCGGAATGGGCAGCTCTGCCGTGCAATCCCAGCTCGTAGCCCTTGGCTCCGCGTGTATTCACTGGAGGATTCTCGGGCTTTATAACCCTCCCGCGTGCCCCGCCCACCC-CGGGCAGGCTGCTGCGCATGCGCGGGCAGGCTGGGTCTGTGTTCTGGGG-AGCGCGGAGCCGGAGCAGCCGCGGAGGAGCGCTTGGGCTCCGCCGATACCGTAGTGTCCACTGCTCGCCTCAGTCGCCACTGCTTTAGCCGCCGCC------------ACCGGTGGAGCGGCCGCCTA-TTGTCTTTCTCCGTGGCGAAGGTGAGGAGCTCTCCCAGCTCGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGTGAGAGCGCAACTTAGTTGCCGGAGTTGGGGGAAGTTTTG--ATTTGAGGA-GG----------------------------------------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108            5137185 1092 -  54856640 AACACTCTTTTTGAAGTACATTTTTTTTTTTTTTTGGCCACTTTTTATTTGA------------CATTAATGAAACAATGGTTTGACGTCATAGGCATGCCCCTCCTAATGAGCACTACAACACTTAACTATTTGAAAAAA-AAGTTTCTTCGTGTACCAACTAATATATTCTACTCGGCTACAGTTGGTACACGGA------TTTGTTTCCTAAAGCAaccagatgatttctgaggtcctttgcagctcgaacacggaatgactttgtggtGATCGAGTAACCAAAAGTTCACGGAATGCACTGTCACAATCGTGATTCCGCCATAGCACCGTGCATCCATGCAACACTTG-------------TTTAATACCTAGCAGT---GACTCTGCTAGGCTGTGGACACAGAAGACTAAACCCCACTTCCTGATTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCAGGATGTGTGGTTAAGTGTTGCAGTTCAGGTAACCACCGGCACACAGAGGAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACCGT--GGGTGGGCATGTCCCAGAGCAGCCTCAGCCAGCCACCCCACTTTGATCACTTTGCCGCC-AGCAACAGCGGCGGT----------CAACCTCAGCCTCCCTTAGCAACCTGCGTGCCCCGCCCAGGAGCCTTACTATTGGTCTCGTGGAGCGGGATGGGCAGCTCTGCCGTGCAATCCCAGCTCGCAGCCCTTGGCTCCGCGTGTATTCACTGGAGGACTCTCAGGCTTTACCGCCCTCTCACGTGCCCCGCCCACTC-CGGGCAGCCTGCGGCGCATGCGCCGGCGGGCTGGGTCTGTGTGCTGGGG-AGCGCGGAGCCGGAGCAGCTGTGGAGAAGCGCTTGGGCTCCGCCGAGACCGTAGTGTCCACTGCTCGCCTCGGTCGCCACCGCTTTGGCCGTCGCC------------ACTGGTGGAGCGGCCGCCTA-TTGTATTTCTCCGTGGCGAAGGTGAGGAGCTGTCCCGGCTCGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGGAAGTTTTG--ATTTGAGGA-GGGGTCCGGGTGCGGAGCGCCGCCCCT-CCCCTGCGGCCGCT
i saiBol1.JH378108          N 0 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=693062.000000
s hg38.chr15_KI270850v1_alt     65527 490 +    430880 CGGTGGGGCGGGCCCCAGAGGAGGGTCGGGGGCTGCGCGGGGCTTCAGGGGCGGG---------CGGCACGGATGGGTAGCCGGGCGGCGCGGGGACCTCAGCTTTGCGGACCCCTCCTCCCTGCGCATCACCCTTCTCCCGCATTGTCTGCTTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTTGGGGGCCGTCGCCGCTTTCCGGATGGGGGGCGCGCCCGGCGGCG-----------------------GATGGCCCCGAACCCTTGCCCCGGGTCCCCGGGTTGGCGCCGCTGGGGCGGACTCACTCCTCCCCTGGGGCGGGCGGCCGCGGTGTGGAGTCCGCGCCGCGAACAAGTGCTGCGGGCGCGAGGGAGCGGTTCCCC-GGGGCCGACGCGGACGGTAAACCTGTCCGGCGGCGCCCGCCTGCTGGGGCCTCTCCGCTGTTTCTCGCGGGCGCGGCCCGGCTGAAACTGCGACCGTCGGAGGCGAGCGGCC--------------------------CTCTGGGACCCGTGCAGC
s gorGor5.CYUI01015946v1       357537 490 -    378907 CGGTGGGGCGGGCCCCAGAGGAGGGTCGGGGGCTGCGCGGGGCTTCAGGGGCGGG---------CGGAACGGATGGGTAGCCGGGCGGCGCGGGGACCTCAGCTTTGCGGACCCCTCCTCCCTGCGCATCACCCTTCTCCCGCATTGTCTGCTTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTTGGGGGCCGTCGCCGCTCTCCGGATGGGGGGCGCGCCCGGCCGCG-----------------------GATGGCCCCGAACCCTTGCCCCGGGTCCCCGGGTTGGCGCCGCTGGGGCGGACTCACTCCTCCCCTGGGGCGGGCGGCCGCGGTGTGGAGTCCGCGCCGCGAACAAGTGCTGCGGGCGCGAGGGAGCGGCTCCCC-GGGGCCGACGCGGACGGTAAACCTGTCCGGCGGCGCCCGCCTGCTGGGGCCTCTCTGCTGTTTCTCGCGGGCGCGGCCCGGCTGAAACTGCGACCGTCGGAGGCGAGCGGCC--------------------------CTCTGGGACCCGTGCAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102103863 524 + 121039945 CGGTGGGGCGGGCCCCAGAGGAGGGTCGGGGGCTGCGCGGGGCTTCGGTGGCGGGCGGGAGGGACGGGACGGACGGGTAGCCGGGCAGCGCGGGGACCTCAGCTTTGCAGACCCCTCCTCCCTGCGCATCATCCTTCTCCCACA-TGTCTGATAGGGGCGCGGCGCGCCTCCCACTCCGCAGCCCAACTTGGGGGCCGTCGCCGCTTTCCGGGTGGGGGGCGCGCCCGGCCACG-----------------------GATGGCCCTGAACCCCTGCCCCAGCTCCCCGGGTTGGCGCCGCTGGGGCGGACTCACTCCTCCCCTGGGGCGGGCGGCCGCGGTGTGGAGTCCGCGCCGCGAACAGGTGCTGCGGGCGCGAGGGAGCGGCTCCCC-GGGGCCGACGCGGACGGTAAACCTGTCTGGCGGCGCCCGCCGGCTGGGGCCTCTCCGCTGCTTCTCCGGGGCGCGGCCCGGCTGAAACTCCGCCCTTCGGAGGCGAGCGGCCCAGGAGGCCCGTGCGGTCCCCAAGCGCTCTGGGACCTGTGCAGC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106469035 474 - 171882078 AGGTGGGGCGGGCTCC------------GGAGCTGCGCAGGGCTTCCGgggcagg---------cgggacggacgggtagccgggcggcgcgggGACCTCAGCTTTGCAGACCCCTCCTCTCTGCGCATCACCCTTCTCCCGCATTGTCTGCTTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTT-GGGGCCGTCGCCGCTTTCCGGGTGGGGGGCGCGCCCGGCCGCG-----------------------GATGGCCCCGAACCC-TGCCCCGGGTCCTCTGGGTGGCGCTGCTGGGGCGGGCTCACTCCTCCCCTGGGGCCGGCGGCCTCCGTTTGGAGTCCGCGCCCGGAACAAGTGCTGCGGGAGCGGGGGAGCGGCTCCCCGGGGGCCGACGCAGACGGTAAATCTGTCCGACGGCGCCCGCCTGCTGGGG--TCTCCGCTGCTTGTCCCGGACGCGGCCCGGCTGAAACCCCGCCGCTCCGAGTCGAATGAC---------------------------CCAGGAGACCTGTGCGGT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20312526 475 -  24206276 AGGTGGGGCGGGCCCC------------GGAGCTGCGCGGGGCTTCCGgggcagg---------cgggacggacgggtagccgggcggcgcgggGAGCTCAGCTTTGCGGACCCCTCCTCTCTGCGCATCACCCTTCTCCCGCATTGTCTGCTTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTTGGGGGCCGTCGCCGCTTTCCGGGTGGGGGGCGCGCCCGGCCGCG-----------------------GATGGCCCCGAACCC-TGCCCCGGGTCCTCTGGGTGGCGCTGCTGGGGCGGGCTCACTCCTCCCCTGGGGCTGGCGGCCTCCGTTTGGAGTCCGCGCCCGGAACAAGTGCTGCGGGAGCGGGGGAGCGGCTCCCCGGGGGCCGACGCAGATGGTAAATCTGTCCGACGGCGCCCGCCTGCTGGGG--TCTCCGCTGCTTCTCCCGGACGCGGCCCGGCTGAAACCCCGCCGCTCCGAGTCGAATGAC---------------------------CCAGGAGACCTGTGCGGT
i chlSab2.chr29             C 0 C 0
s calJac3.chr10             113947417 516 - 132174527 ----------------------GGGGCGGGGTCTGCAGCGGGCTTTAGGGGCGGG---------CGGGACGGACGGGTTGCCTGGCGGCGCCGGGACCTCTACTCTGCGGACCCCTCCTCCCTTCGCATCACCCTTCTCCCGCATTGTCTGTTCCGGGCTCGGCGCGCTTCCCACCCCGCGGCGCCGCTT-GGGTCAGTCACCGCTTTCCGGGTCGGAGACGCGCTCGGCCGCGGAGGCCTCCTCAGTCGCCCCAGTGAGGCCCCCGAACCCCTggcccgggtccccgggtcggcgccgcgggggcgggcccgcTCCTGCCGTGGGGCTGGCGGCCGCGGTGTGGAGTGCGCGCCTCGAACAAGTGCTGCGCGCGCGAGGGAGCGGTTCTCC-GGGGCCGACCCGGGCGGTAAACACGTCGGGCCGCGCCCGCCTGCCGGGGCCGTTCTGCGCCTCCTCGGGGGCGCCGCCGGGCTGAAACCGCGCGGGTCTGAGGCGAGCGGCCCAGGAGACCTGTGCGGTCCTCACGCACTTTGCGACCATTGCAGC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108            5138277 526 -  54856640 CGGTGGGCCGGGCCTCGGAGAAGGGGCGAGGGCTGCGGGGGGCTTTCGGGGCGGG---------CGGGACGGACGGGTTGCCTGACGGCGCCGGGACCTCTGTTCTGCGGACCCCTCCTCCCTTCGCATCACCCTTCTCCCGCATTGTCTGTTCGGGGCTCGGCGCGCCTCCGACCCCGCAGCGCCACTT-GGGTTGGTCGCCGCGTTCCGGGTCGGAGGCCCCCTCAGGCG-------CCCCGC-----CCCCAGTGAGGCCCCGAACCCCGTGGCCCGGGTCCCCGGGTCGGCGCTGCGGGGTCGGGCCCACTCCTCCCCCGGGGCTGGCGGCCGCGGTGTGGAGTCCGCGCCGCGAACAAGTGCTGCGGGCGCGAGGGAGCTGTTCCCC-GGGGCCGACCCGGGCGGTAAACACGTCGGGCCGCGCCCGCCTGCCGGAGCCGTTCTGCGCCTTCTAGGGGGCGCGGCCGGGCTGAAACCGCGCTGGTCGGAGGCGGGCGGCCCGGGAGACCTGTGCGGTCCCCACGCGCTCTGGGACCCGTGCAGC
i saiBol1.JH378108          C 0 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       272851 482 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=162009.000000
s hg38.chr15_KI270850v1_alt     66017 100 +    430880 CGGTCCACCTTGCAGCTATACTTTGAGACTAAACA----------------tttt---------------------------------tttttttttttttGCAAAGGCAAACCGGTATGTGAAGTTGAAAAAATCAAAAACCCTCAAA
s gorGor5.CYUI01015946v1       358027 107 -    378907 CGGTCCACCTTGCAGCTATACTTTGAGACTAAACAA---------tttttttttt---------------------------------tttttttttttttGCAAAGGCAAACCGGTATGTGAAGTTGAAAAAAGCAAAAACCCTCAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102104387  99 + 121039945 CGGTCCAACTTGCAGCTATACTTTGAGACTAAACA-----------------ATT---------------------------------TTTTTTTTTTTTTGCAAAGGCAAACCGATATGTGAACTTGAAAAAAGCAAAAACCCTCAAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106469509  96 - 171882078 CGGTCCAACTTGCAGCTATACTTTGAGACTAATC-------------------TT---------------------------------ATTTTTTTTTTTTGTAAAGGCAAACCGGTATGTGAAATTG-AAAAAGGAAAAACCCTCAAA
i macFas5.chr7              C 0 I 9
s chlSab2.chr29              20313001 101 -  24206276 CGGTCCAACTTGCAGCTGTACTTTGAGACTAATCt---------------ttttt---------------------------------tttttttttttttGTAAAGGCAAACCGGTATGTGAAATTGAAAAAAGGAAAAACCCTCAAA
i chlSab2.chr29             C 0 I 9
s colAng1.NW_012116021v1       273333  93 +   4111199 CGGTCCAACTTGCAGCTGTACTTTGAGACTAATC--------------------------------------------------------TTATTTTTTTTGTAAAGGCAAACCGGTATGTGAAATTGAAAAAAGGAAAAACCCTCAAA
i colAng1.NW_012116021v1    I 482 I 153
s calJac3.chr10             113947933 139 - 132174527 TGGCTCAACTTGCAGCTATATCTTGAGAGCAAACAAAACAAAACACTTTTTTTTTTTTTTTGTAAGTATGGCTCACTGCC--------TTTTTTTTTTTTTGCAAA-GCCAACCAGTTTGTGAAGTTG-AAAAAGGAAAAACCCTCAAC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108            5138803 147 -  54856640 CGGCTCAACTTGCAGCTATATCTTGAGAGCAAACAAAACAAAAC-TTTTTTTTTTTTTTTGGTAAATATGGCTCACTGCCATTTTTTTTTTTTTTCTTTTTGCAAA-GCCAACCAGTATGTGAAGTTGAAAAAAGGAAAACCCCTCAAA
i saiBol1.JH378108          C 0 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=9943.000000
s hg38.chr15_KI270850v1_alt     66117 23 +    430880 ttttccttc-------tttttttttttttt
s gorGor5.CYUI01015946v1       358134 25 -    378907 ttttccttc-----tttttttttttttttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102104486 30 + 121039945 ttttctttctttctttttttcttttttttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106469614 22 - 171882078 -tttctctc-------ctctctctctcttt
i macFas5.chr7              I 9 I 1
s chlSab2.chr29              20313111 26 -  24206276 -tttctctc---ctctctctctctctcttt
i chlSab2.chr29             I 9 I 1
s calJac3.chr10             113948072 15 - 132174527 -GTCCCCCC---CCCC-----------TTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108            5138950 26 -  54856640 -CTCCCCCC---CTCCGCCttttttttttt
i saiBol1.JH378108          C 0 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       273426 153 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=2449399.000000
s hg38.chr15_KI270850v1_alt     66140 1192 +    430880 ttttttAAA-TCAAGAAAGGGGGTAGATAGGTTTGTTTTGTTTTAGAAATAGTTTTTATAGCAGAGTGATACCGTCACATTTAAT------GATCCTACTGTGAATTCAAGAATTCACGATGAAAGTTGGATTGAGCGGTATTTTGGTGTTCATTCTTTGC--TGATACTCATTAATGAAGTTCGTT-GGAGA-ATTTATTGCTTCAGTACAGTAAAAAC--CAGTGTGCC--------TTTTTTT-TTGTTACTACT----------CCCCC---CTCCCCGC-ATTGTTTTATTTTTCGAAGAAGCACTTTATTCAGTTTTTCTAAGCCACGGGATTGCCCAGATGAGGACCAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAAGTTTGTGAGGGAGCTAAGATGAGTTGAGATAAACCAGTGTTACTGTTCTTGTATTCTGTCGTGGACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTGGTCCAGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTCTGGCTTATTATATGAACATGATTCTGTTTCACTTCCCCAGATGGAACTAGCTTAAATGTCTATCATTTATAGTGACAAATGATCAAAATGGCTAGAGTGTCATTTA---TTAACTTCAGTTGTAGTCCTTTACCTTACCTTCTGCTAAATGAAAAAGAAAAATTTGACAAAT-ACTGTGTGCGTCAGTTTGCTCTGAGTGATTTCTCGTGCTAAGTGAGTCCTGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCATTGCCCTTTTAAACTACAGAGCCACTTGTAGGATTCACAATACTCACTCAATGGCTTCCCTTCCTGGCAgtgtggttt--tgtgtgtgtgtgtgattgtgGGGAAGGA----GGCTGACAGAGGTTGGAAGGGATTGTCAGGGAGG--GACATCATGTAAGCAAGTACTA---ACAACATAACGTGACGAGGGCACCAGTTGCTTTCCTTCTGTGGGCGGTGATGGCATGTTATACTGTAGGTACTATTGTTGTAGGATTTCTCACAGTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTATACTATAAATGGActcctcctctagtcctttaactccttgagggctgtgatagaccttatttaactttgtaccct
s gorGor5.CYUI01015946v1       358159 1195 -    378907 ttttttAAA-TCAAGAAAGGGGGTAGATAGGTTTGTTTTGTTTTGGAAATAGTTTTTATAGCAGAGTGATACCGTCACATTTAAT------GATCCTACTGTGAATTCAAGAATTCACGATGAAAGTTGGATTGAGCGGTATTTTGGTGTTCATTCTTTGC--TGATACTCATTAATGAAGTTAGTTGGGAGA-GTTTATTGCTTCAGTACAGTAAAAAC--CAGTGTGCCT------TTTTTTTT-TTGTTACTACT----------CCCCC---CTCCCCGC-ATTGTTTTATTTTTCGAAGAAGCACTTTATTCAGTTTTTCTAAGCCACGGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAGAGGTCATTATTGGCAAGTTTGTGAGGGAGCTAAGATGAGTTGAGATAAACCAGTGTTACTGTTCTTGTATTCTGTCGTGGACTCTT-GGGATTTGCAGGCTGCATTAAGTACAAGTCTGGTCCAGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTCTGGCTTATTATATGAACATGATTCTGTTTCACTTCCGCAGATGGAACTAGCTTAAATGTCTATCATTTATAGTGACAAATGATCAAAATGGCTAGAGTGTCATTTA---TTAACTTCAGTTGTAGTCCTTTACCTTACCTTCTGCTAAATGAAAAAGAAAAATTTGACAAAT-ACTGTGTGCGTCAGTTTGCTCTGAGTGATTTCTCGTGCTAAGTGAGTCCTGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCGATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCATTGCCCTTTTAAACTACAGAG-CACTTGTAGGATTCACAATACTCACTCAATGGCTTCCCTTCCTGGCAgtgtggttttgtgtgtgtgtgtgtgattgtgGGGAAGGA----GGTTGACAGAGGTTGGAAGGGATTGTCAGGGAGG--GACATCATGTAAGCAAGTACTA---ACAACATAACGTGACGAGGGCACCAGTTGCTTTCCTTCTGTGGGCGGTGATGGCATGTTATACTGTAGGTACTATTGTTGTAGGATTTCTCACACTTCTTTTGCCTTGACTAAATGGTAACTGCACACATCCTATACTATAAATGGActcctcctctagtcctttaactccttgagggctgtgatagaccttatttaactttgtaccct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102104516 1189 + 121039945 ttttttAAA-TCAAGAAAGGGGGTAGATAAGTTTGTGTTGTTTTGGAAATAGTTCTTACAGCAGAGTGATACCGTCATATTTAAT------GATTCTACTGTGAACTCAGGAATTCACGATGAAAGTTGGATTGAGCGGTATTTTGGTGTTCATTCTTTGC--TGATACTCATTAATGAAGTTATTT-GGAGA-GTTTATTGCTTCAGTACAGTAAAAAC--CAGTGTGCC-------TTTTTTTG-TTGTTACTACT-----------CCCC---GTCCCCGC-ATTGTTTTATTTTTCGAAGAAGCAGTTTCTTCAGTTTTTCTAAGCCATTGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAAGTTTGTGAAGGAGCTAAGATCAGTTGAGATAAACCAGTGTTA--GTTCTTGTATTCTGTCGTGGACTCTTGGGTATTTGCAGGCTGCATTAAATACAAGTCTGGTCCAGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTCTGGCTTATTATATGAACATGATTCTGTTTCAGTTTCCCAGATGGACCTAGCTTAAATATCTGTCATTCGCAGTGACAAATGAACAAAATGGCCAGAGTGTCATTTA---TTAACTTCAGTTGTATTCCTTTACCTTACCTTCTGCTAAATGAAAAATAAAAATTTGACAAAT-ACTGTGTGTGTCAGTTGGCTCTGAGTGATTTCTCATGCTAAGTGAGTCCCGTGGAGAAGCGTTCCTGGGCTTTTCTGCTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCATTGCACTTTTAAACTACAGAGCCACTTTTGGGATTCACAATATTCGCTCAATGGCTTCCCTTCCTGGTtgtgtggttt--tgtgtgtgtgtgtgattgtgGGGAAGGA----GGTTGACAGAGGTTGGAAGGGATTGTCAGGGAGG--GACATAATGTAAGCAAGTGCTGCTTACAACATAATGTGACGAGTGCACCAGTTGCTTTCCTTCTCTGGGCGGTGATGGCATGTTATACTGTAGGTGCTA---TTTTAGGATTTCTCACACTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTATAGTATAAATGGActcctcctctagtcc-ttaacttcttgagggctgtgatagaccttatttagctttttaccct
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106469637 1199 - 171882078 ttttttAAACTCAAGAAAGGGGGTAGATAGGT-----TTGTTTTGGAAATGGTTCTTATAGCAGAGTGATACCGTCACATTTAAT------GCTCCTACTGTGAACTCAGGAATTCACGATGGAAGTTAGATTGAGCGGTATTTTGGTGTTCATTCTTTGC--TGACACTCATTAATGAAGTTATTT-GGAGA-GTTGATTGCTTCAGTAGAGTAAAAAC--CAGTGTGCCttttttgtttgtttgtttgttACTACTTCCC-----CCCCCA---CCCCCCGC-ATTGTTTTAATTTTCGAAGAAGCAGTTGTTTCAGTTTTTCTAAACCATTGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTGGTTATTGGCAAGTTTGTGAAGAAGCTAAGATCAGTTGAGATAAATCATTGTTACTGTTCTTGTATTCCGTCGTGGACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTGGTCCAGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTGTGGCTTATGATATGAACATGATTCTGTTTCAGTTCCCCAGATGGAACTAGCTTAAATGTCTGTCATTCATAGTGACAAATGAACAAAATAGCCAGAGTGTCATTTACTGTTAACTTCAGTTGTGTTCCT-----TTACCATCTGCTAAATGAAAAAGAAAAATTTGAGAAATAACTGTGTATGTCAGTTTGCTGTGGGTGATTTCTCATGCTAAGTGAGTCATGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCGATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCGTTGCACTTTTAAACTACAGAGCCAGTTTTAGGATTCACAATACTCGCTCGATGGCTTCCCTTCCTGGTTGTGTGGT--------TGTGTGTGTGATTGTGGGGAAGGAGGTTGGTTGAC--AGGTTGGAAGGGATTGTCAGGGAGG--GACACAATGTAAGCAAGTACTGCTGACAACATAACGTGACGAGTGCACCAGTTGCTTTCCTTCTCTGGGCGGTGATGGCATGTTATCCTGTAGGTACTATTGTTTTAGGATTTCTTACACTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTGTACTATAAATGGACTCCTCCTCTAGTCC-TTAACTCCTTGAGTGCTGTGATAGACCTTACTTAGCTTTGTACCCT
i macFas5.chr7              I 1 C 0
s chlSab2.chr29              20313138 1195 -  24206276 tTTTTTAAACTCTAGAAAGGGGGTAGATAGGT-----TTGTTTTGGAAATGGTTCTTATAGCAGAGTGATGCCGTCACATTTAAT------GCTCCTACTGTGAACTCAGGGATTCACGATGGAAGTTAGATTGAGCGGTATTTTGGTGTTCATTCTTTGC--TGACACTCATTAATGAAGTTATTT-GGAGA-GTTGATTGCTTCAGTAGAGTAAAAAC--CAGTGTGCCTCTT---TTTTTTTG-TTGTTACTACTTCCC-----CCCCAC---CCCCCCGC-ATTGTTTTAATTTTCGAAGAAGCAGTTTATTCAGTTTTTCTAAACCATTGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAAGTTTGTGAAGGAGCTAAGATCAGTTGAG--AAGCCAGTGTTACTGTTCTTGTATTCCGTCGTGGACTCTTGGGGATTTACAGGCTGCATTAAGTACAAGTCTGGTCCAGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTGTGGCTTATTGTATGAACATGATTCTGTTTCAGTTCCCCAGATGGAACTAGCTTAAATGTCTGTCATTCACAGTGACAAATGAACAAAATAGCCAGAGTGTCATTTACTGTTAACTTCAGTTGTGTTCCT-----TTACCATCTGCTAAATGAAAAAGAAAAATTTGAGAAATAACTGTGTATGTCAGTTTGCTGTGAGTGATTTCTCATGCTAAGTGAGTCATGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCGTTGCACTTTAGAACTATAGAGCCAGTTTTAGGATTCACAATACTCGCTCGATGGCTTCCCTTCCTGGTTGTGTGGT--------TGTGTGTGTGCTTGTGGGGAAGGAGGTTGGTTGACAGAGGTTGGAAGGGATTGCCAGGGAGG--GACACAATGTAAGCCAGTACTGCTGACAACATAACGTGACGAGTGCACCAGTTGCTTTCCTTCTCTGGGCGGTGATGGCATGTTATCCTGTAGGTACTATTGTTTTAGGATTTCTCACACTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTGTACTGTAAATGGACTCCTCCTCTAGTCC-TTAACTCCTTGAGTGCTGTGATAGACCTTACTTAGCTTTGTACCCT
i chlSab2.chr29             I 1 I 18239
s colAng1.NW_012116021v1       273579 1193 +   4111199 ttttttAAACTCAAGAAAGGGGGTAGATAGGT-----TTGTTTTGGAAGTGGTTCTTATAGCAGAGTGATACCGTCACATTTAAT------GCTCCTTCTGTGAACTCAGGAATTCACAATGGAAGTTGGATTGAGCGGTATTTTGGTGTTCATTCTTTGC--TGACACTCATTAATGAAGTTGCTT-GGAGA-GGTGATTGCTTCAGTAGAGTAAAAAC--CAGTGTGCCTTT----TTTTTTTG-TTACTACTTCCACCC-----CACCCC---CCCCCCGC-AGTGTTTTAATTTTCGAGGAAGCAGTTTATTCAGTTTTTCTAAACCATTGGATTGCCCAGATGAGGTCAAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAGGTTTGTGAAGGAGCTAAGATCAGTTGAG--AAACCAGTGTTACTGTTCTTGTATTCCGTCATGGACTCTTAGGGATTTGCAGGCTGCATTAAGTACAAGTCTGGTCCAGTTTTGGGTGCATGTATTCCACTGAATTTGGTTCGTGTGGCTTATTATATGAACATGATTCTGTTTCAGTTCCCCAGATGGAACTAGCTTAAATGTCTGTCATTCATAGTGACAAATGAACAAAATAGCCAGAGTGTCATTTACTGTTAACTTCAGTTGTGTTCCT-----TTACCGTCTGCTAAATGAAAAAGAAAAATTTCAGAAATAACTGTGTGTGTCAGTTTGCTGTGAGTGATTTCTCGTGCTAAGTGAGTCATGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCTTCACCGGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCGTTGCACTTTAAAACTGTAGAGCCAGTTTTAGGATTCACAGTACTCGCTCGATGGCTTCCCTTCCTGGTTGTGTGGTTA------TGTGTGTGTGATTGTGGGGAAGGA-GTTGGTTGAC--AGGTTGGAAGGGATTGTCAGGGAGG--GACACAATGTAAGCAAGCACTGTTTATAACATAACTTGATAAGTGCACCAGTTGCTTTCCTTCTCTGGGCGGTGATGGCATGTTATCCTGTAGGTACTATTGTTTTAGGATTTCTTACACTTGGTTTGCCTTGACTAAATGGTAACTGCACACATACTGTACTATAAATGGActcctcctctagtcc-ttaactccttgagggctgtgatagaccttacttagctttgtaccct
i colAng1.NW_012116021v1    I 153 C 0
s calJac3.chr10             113948087 1190 - 132174527 TATTTTAAA-TCAAGAAAGGGGATAGATAGGTTTGTTTTGTTTTGGAA---GTTCTTACAGTCGAGTGATACCGTCGGGTTTAATTTTCTAGGTCCTACTGTGAACTCAGGAATTCGCAGTGAAAGTTGGATTGAACTTTATTTTGGTGTTCATTCTTTGCTGTGACACTCCTTATTGAAGTTATTT-GGAGAGTTTTACTGCTTCAGTACAGTAAAAACTGTACTGTGCCTTTTGT-TGTTGTTG-TTGTTGCTACTCGCCCTCA-CCCGCC---CCCCCCACAACTGTTTTATTTTTCGAAGAAGCAGTTTATTCAGTTTTTCTAAACCGTTGGATTGCCCAGATGAGGACAAAAGTTGCAGTTCTTAAAAGGTCATTATTAGCAAGTTTGTGAAGGAGCTGACATCAGTTGAGATAAATCAGTGTTCCCGTTCTTGTATTCCATCGTGTACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTTGTCAAGTTTTGGGTGCTCGTATCCCAGTGAATTTGGTTCTCGTGGCTTATGAGATGAACGTAATTCTGTTTGAGTTTCCCAGATGGAACTAGCTTAAATGTCTGTCATTCATAGTG------GAAGAAAATGTCCAGAGTGTCATTTATCGTTAACT-------TGTTCCT-----TTACCACTTGCAAATGAAAAAAGAAAAATTAGAGAAAT-ACTGTGTGTGTCAGTTTGCTTTGAGTGATTTCCCATGCTAAGTGAGTCATGTGGAGAAGCGTTCCTGGGCTTCTC-----TGGTGGGCCTTGTGTTATAAAACTAACTTTCTTCGCCTGATGAAACTAAAGACAAATTTTCTTCAGCTACAGACATTGCACTTTTAAAAC-TAACGTCACTTTTAGAATTCAGAATATTCGCTCGATGGCCTTCCTTCCTGGTTTTGTGGT----TGTGTGTGTGTGTGATTGTGGAGGAGGA----GGTTGACAGAGGTTAGAAGGGATTGTCAGGGAGGGAGACATAATGTAAACAAGTACTACTTACAGCATAACGTCACAAGTACACCAGTTGCTTTCCTTCCCTGGGCTGTGATGGCGTGTTACACTGTAGATACAATTGTTTTAGGATTTCTCACACTTCATCTGCCTTGACTAAATGGTAACTGCACACATACTG------AAATGGA---CTCCTCTAGTCCTTTAACTCCTTGAGGTCTGTGATAGACCTTATTTAGCTTTGTACCCT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108            5138976 1185 -  54856640 ttttttaaa-tCAAGAAAGCGGGTAGGTAAGTTTGTTTTGTTTTGGAA---GTTCTTATAGCCGAGTGATATCGTCACGTTTAATTTTCTAGTTCCTACTGTGAACTCAGGAATTCGCAGTGAAAGTTGGATTGAGCGTTATTTTGGTGTTCATTCTTTGCTATGACACTCCTTAATGAAGTTATTT-GGAGA-CTTTATTGCTTCAGTACAGTAAAAAC--CAGTGTGCCTTTT--------TTT-TTGTTGCTACTCGCCCGCACCCCGCCTCACCCCACACAACTGTTTTATTTTTCGAAGAAGCAGTTTATTTAGTTTTTCTAAACCGTTGGATTGCCCAGATGAGGACAAAGGGTGCAGTTCTTAAAAGGTCATTATTGGCAAGTTTGTGAAGGAGCTGACATCAGTTGAGATAAATCAGTGTTCCTGTTCTTGTGTTCCATCGTGGACTCTTGCGGATTTGCAGGCTGCATTAAGTACAAGTCTTGTCAAGTTTTGGGTGCTCGTATTCCACTGAATTTGGTTCTTGTGGCTTATGAGATGAACATAATTCTGTTTGAGTTTCCCAGATGGAACTAGCTTAAATGTCTGTCATTCATAGTG------GAAGAAAATGTGCATAGTGTCATTTATCTTTAACTTCAGTTGTGTTCCT-----TTACCACCTGCTAAATGTAAAAGAAAAATTTGAGAAAT-AGTGTGTGTGTCAGGTTGCTTTGAGTGATTTCCCATGCTAAGTGAGTCATGTGGGGAAGCGTTCCTGGGCTTCTC-----CCGTGGGCCTTGTGTTATAAAACTAACTTTCTTCACCTGGTGAAGCTAAAGACAAATTTTCTTTAGGCACAGGCGTTTCCCTTTTAAAAC-TACAGTCACTTGTAGGATTCAGAATACTCGCTCGATGGCTTTCCTTCCTGGTTGTGTGGTTG--TGTGTGTGTGTGTGATTGTGGAGAAGGG----GGTTGACAGAGGTTGGAAGGGATTGTCAGGAAGGGAGACATAATGTAAACAAGTACTACTTAAAACATAACGTCTCGAGTACACCAGTTGCTTTCCTTCTCTGGGCTGTGATGGCGTGTTATACTGTAGATATAATTGTTTTAGGATTTCTCACACTTCATCTGCCTTGACTAAATGGTAACTGCACACATAGTG-----TAAATGGA---CTCCTCTAG---------TCCTTGAGGTCTGTAATAGACCTTATTTAGCTTTATACCCT
i saiBol1.JH378108          C 0 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=2710499.000000
s hg38.chr15_KI270850v1_alt     67332 1278 +    430880 ctttgccagt----ggttttaacatagtgcaggcccggtatgtgtttgaattgggtaaatTACTTTTACTGCCTAGTGGTAGCTGGTGTACACAGGAGAGGGCCACCAACTCTGGGGACTTGTCCAAAATGACAATTCACTTGCAGATCTCTGATGAAATTTACTTTAAAAGGATTTCTAACC-TTTTTTT--------TAATCTGTCGGTTATT--TTTTGAAAAGAAGTGGGGCTTAACTAGTGCTCTAAGGATTTTAACAAGAGATTCCGATTTAGAAATCTG-------TCCC--CC-CTTTTGGTGAAAttc-ttattttttttagagtcagaatcttcactgttgcccagttgtct----ccccgggacccaagccgtcttcccacctcagcctcccacagtactggaattacaggcgtgagccaccccacccagcTGGTGAAATTATTAAAATTG-----------TAGTGAAAACTCTGCCTCCATTGTGAAATTGG---AAAAAAATTAGAAATTTTAgaaaaaagtacgccctttggagctaggtagagttcagatccccacatttccattgagtagttgcatagcctctcagagcttcagcttcctactccttaagggttagtaacatgctttgcagtgttgttaggaatcagtgaaactg--tgtgagatacttaactgcagtatctaacatggagtaggtagctatttcctggtagctgtaATGATAATAATTTTGATACGTTTTTACATGACTTAAGCATTCTGAAAAGTCTGATGCTTCTGAGTATGGAGGCTTAGCTATTTCTTTCATAAAGAAGGGGCCCTGAGACTTGTGAGTCTTATCCAAATGCATTTCTTCAAAGGTGTCAGATGAACTGAAGGATAATGGAAACAATAGCAAATTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTTGCAGAGT-ACTTGGTAGGGTAGAGCTCTTTGTGACTATGCTATTTAGGAAATGGTGAGAGATGGATTGTTTTCAGTACATCAGTCATAAGAGGATATGAGTGAGTTCCAAC----TTTCCTTATTTT--ACCTTAGTCTTGACAAATAACAAGTATGGATTATGTCTGTATTTCTCCGACTTGTTTAAGGTAGAACTGGACTGGGTGTTAACAGTGTTAGTTCAGT--AGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACAC-TTTAAAGGTGCCACCATTTGCAGAAGAAAGCAGTGATTTAAAGCAGCTATACTAGCACAGTTTAGAATACTT-ACACTAGCTGATGGAGTAGATACATTCTAG
s gorGor5.CYUI01015946v1       359354 1278 -    378907 ttttgccagt----ggtcttaacatagtgcaggcacggtatgtgtttgaattgggtaaatTACTTTTACTGCCTAGTGGTAGCTGGTGTACACAGGAGAGGGCCGCCAACTCTGGGGACTTGTCCAAAATGACAGTTCACTTGCAGATCTCTGATGAAATTTACTTTAAAAGGATTTCTAACC-TTTTTTT--------TAATCTGTCGGTTATT--TTTTGAAAAGAAGTGGGGCTTAACTGGTGCCCTAAGGATTTTAACAAGAGATTCCGATTTAGAAATCTG-------TCCC--CC-CTTTTGGTGAAAtta-tta-tttttttagagtcggaatcttcactgttgcccaattgtct----ccccgggacccaagccgtcctcccacctcagcctcccacagtattggaattacaggcgtgagccaccccacccagcTGGTGAAATTATTAAAATTG-----------TAGTGAAAACTCTGCCTCCATTGTGAAATTGG---AAAAAAATTAGAAATTTTAgaaaaaagtacgccctttggagctaggtagagttcagatccccacatttccattgagtagttgcatagcctctcagagcttcagcttcctactccttaagggttagtaacatgctttgcagtgttgttaggaatcagtgaaactg--tgtgagatacttaactgcagtatctaacatggagtaggtggctatttcctggtagctgtaATGATAATAATTTTGATACCTTTTTACATGACTTAAGCATTCTGAAAAGTCTGATGCTTCTGAGTATGGAGGCTTAGCTATTTCTTTCATAAAGAAGGGGCCCTGAGACTTGTGAGTCTTATCCAAATGCATTTCTTCAGAGGTGTCAGATGAACTGAAGGATAATGGAAACAATAGCAAATTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTTGCAGAGT-ACTTGGTAGGGTAGAGCTCTTTGTGACTATGCTGTTTAGGAAATGGTGAGAGATGGATTGTTTTCAGTACCTCAGTCATAAGAGGATATGAGTTAGTTCCAAC----TTTCCTTATTTT--ACCTTAGTCTTGACAAATAACAAGTATGGATTATGTCTGTATTTCTCAGACTTGTTTAAGGTAGAACTGGACTGGGTGTTAACAGTGTTAGTTCAGT--AGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACAC-TTTAAAGGTGCCACCATTTGCAGAAGAAAGCAGTGATTTAAAGCAGCTATACTAGCACAGTTTAGAATACTTAACACTACCTGATGGAGTAGATACATTCTAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102105705 1274 + 121039945 ctttgccggc----agtcttaacatagtgcaggcacggtatgtgtttgaattgggtaaatTATTTTTACTGCCTAGTGGTAGCTAGCGTACACAGGAGAGAGCCACCAACTCTGGGGACTTGTCCACAATGACAGTTCACTTGCAGATCTCTGATGAAATTTACTTTAAAAGGATTTCTAACCTTTTTTTT--------TAATCTGTCGGTTATT--TTTTGAAAAGAAGTGGGGCTTAACTAGTGCTCTAAGGATTTTAACAAGAGATTCCGATTTTGAAATCTG-------TCCC--CCGCTTTTGGTGAAATTA-CTG-tttttttagaatcggaatcttcgctgtttcccagttgtct----ccccgggacccaagctgtcctcccacctcagcctcccacagtgttggaattacaggcaggagccaccccacccagcTGGTGAAATTATTAAAATTG-----------TAGTGAAAACTCTCCCTCCATTGTGAAATTGG---AAAAAAATTAGAAATTTTAgaaaaaagtgtaccctttggagctaggtagagttcagatccccacatttccattgactagttgcatagcctttcagagcttcagcttcctactccataagggttagtaacatgctttgcagtgttgttagcaatcagtgaaactg--tgtgagatagttaactgcagtatctaacatgaagtaggtagctatttcctggtagctgtaATGATAATAATTTTGATACGTTTTTACATGACTTAAGCATTCTTAAAGGTCTGATGCTTCTGAGTATGGAGGCTTAGCTACTTCTTTCATAAAGAAGGGGCCCTGAGACTTGTGAGTCTTATCCAAATGCATTTCTTCAAAGGTGTCAGATGAACTGAAGGATAATGGAAACAATAGCGAATGTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTTGCAGAGTGGCTTGGTAGGGTAGAGCTCTTTGTGACTATGCTATTTAGGAAATGGTGAGAGATGGATTGTTTTCAGTACATCAGTCATAAGA------AAGTTAGTTCCAAC----TTTCCTTATTTT--ACCTTAGTCTTGACAAATGACAAGTATGGATTATGTCTGTATTTCTCAGACTTGTTTAAGATAGAACTGGACTGGGTGTTAACAGTGTTAGTTCAGT--AGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACAC-TTTAAAGGTGCCACCATTTGCAGAAGAAAGCAGTGATTTAAAGCAGCTATACTAGCACAGTTTAGAATACTT-ACAGTACCAGATGGAGTAGATACATTCTAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106470836 1274 - 171882078 CTTTGCCAGT----AGTCTTAAC--AGTGCAGGCACGGTATGTGTTTGAATTGGGTAAATTATTTTTACTGCCTAGTGGTAGCTAGTGTGCACAGGAAAGAGCCACTAACTCTGGAGACTTGTCCAAAATGACAGTTCACTTGCAGATCTGTGATGAAATTTACTTTAAAAGGATTTCTAAC-------TTAAAAAAAAAAATCTGTCGGTTATTACTTATTTAAAGAAGTGGGGCTTAACTGGTGCTCAAAGGATTTCAACAAGAGATTCCGATTTAGAAATCCG-------TCCC--CCCCTTTTGGTGAAACTA-TTA-tttttttagagtcggaatc-tcactgtttcccagttgtct----gccgggaacccaacccgtcctcccacctcagcctcccacagtgttggaattacaggcctgagccatcccacccagcTGGTGAAATTATTAAAATTG-----------TAGTGACAACTCTCCCTCCATTGTGAAATTGG---AAAAAAATTAGACATTTtagaaaaacgtacaccctttggagctaggtagagttcagatccccacatttccattgactagttgcacagtctctcagagcttcagtttcctactccataaaggttagtaacatgctttgcagagtttttagggatgaatgaaac----tgtgaggtacttaacttcagtatttaacatgaagtaggtagctatttcctggtagctgtaATGATAATAATTTTGATACGTTTTTACATGACTTAAGGTTTCTTAAAAGTCTGATGCTTCTGAGTATAGAGGCTTAGCTATTTCTTTCATAAAGAAGGGGCCCTGAGACTTGTGAGTCTTATAGGAATGCATTTCTT---AGGT--CATGTAAACTGAAGGATAATGGAAACAATAGCGAATTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGAGACTCGCAGAGT-GCTTGGTGGGGTAGAGCTCTTTGTGACTATGGTATTTAGGAAATGGTGAGAGATGGATTGTTTTCGGTACATCAGTCCTAAGAGGCTATGAGGTACTTCCAAC----TTTCTTTATTTT--ACCTTAGTCTTGACAAATAACAAGTGTGGATTATGTCTGTATTTCTCAGACTTGTTTAAGGTAGAACTGGACTGGGTGTTAACAGTGTTGGTTCAGTACAGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACAC-TTTAAACCTGCCACCATTTACAGAAGAAAACAGTGATTTAAAGCAGCTATACCAGCACAGTTTAGAATACTT-ACAGTACCCTATGGAGTAGATACATTCTAG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4012262 1273 +  24206276 gtgtgccagt----agtcttaacatagcgcaggcacagtatgtgtttgaattgggtaaatTATTTTTACTGCCTAGTGGTAGCTAGTGTGCACAGGAGAGAGCCACTAACTCTGGGCACTTGTCCAAAATGACAATTCACTTGCAGATCTGTGATGAAATTTACTTTAAAAGAATTTCTAACC-TTTTTTT--------AAATCTGTCAGTTATT--TTTTGAAAAGAAGTGGGGCTTAACTAGTGCCCTAAGGATTTCAACAAGAGATTCTGATTTAGAAATCTGCCCCCCCTCCC--CCCGTTTTGGTGAAATTA-TTA-tttttttagagtcggaatc-tcactgtttcccagttgtct----cccggggacccaagccatcctcccacctcagtctcccacagtgtttgaattacggatgtgagccaccccacccaacTGGTGAAGTTATTAAAATTG-----------TAGTGACAACT----CTCCATTGTGAAATTGG---AAAAAAATTAGAAATTTAAAAaaaacgtacaccctttggagctaggtagagttcacatccccacatttccattgactagttgcatagcctctcagagcttcagtttcctactctgtaagggttagtaacatgctttgcagtgttcttagaaatcagtgaaacta--tgtgaggtacttaactgcagtatctaacgtggaataagtagctatttcctggtagctGTCATGAGAATAATTTTGATACATTTTT-----ACTTAAGCATTCTTAAAAGTCTGATGCTTCTGAGTATAGAGGCTTAGCTAATTCTTTCATAAAGAAGGGGCCTTGAGACTTGTGAGTCTTATCTAAATCTGTTTCTTCAAAGGTGCCAGATGAACTGAAGGATAATGGAAACAATAGCGAGTTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTTGCAGAGT-GCTTGGTGGGGTAGAGCTCTTTGTGACTGTGTTATTTAGGAAACAGTGCGAGATGGATTGTTTTCAGTTCATCAGTCATAAGAGGATATGTG----TTCCAAT----TTTCTTTATTTT--ACCCTAGTCTTGACAAATAATAAGTGTGGAATATGTCTGTATTTGTCAGACTTGTTTAAGGTGGAACTGGACTGGGTGTTAACAGTGTTAGTTCAGTACAGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACAC-TTTAAAGGTACCACCATTTACAGAAGAAAGCTGTGATTTAAATCAGTTATATTAGCAAAGCTTAGAATACTT-ATAGTACCAGATGGAATAGATACATTCTAG
i chlSab2.chr29             n 18239 C 0
s colAng1.NW_012116021v1       274772 1277 +   4111199 cTTTGCCAGT----AGTCTTAAC--AGTGCAGGCACGGTATGTGTTTGAATTGGGTAAATTATTTTTACTGCCTAGTGGTAGCTAGCGTACTCAGGAGAGAGCCACTAACTCTGGGGACTTGTCCAGAATGACAATTCACTTGCAGATCTGTGATGAAATTTACTTTAAAAGGATTTCTAAC-----TTTT---AAAAAAAATCTGTCGGTTATTATTTATTTAAAGAAGTAGGGCTTAACTAGTGCTCTAAGGATTTCAACAAGAGATTCCGATTTAGAAATCCC---CCCCCCCC--GGCCTTTTGGTGAGATTA-TTA-tttttttagagtaggaatc-tcagtgtttcccagttgtct----gccgggaacccaacccatcctcccacctcagcctcccacagtgttggaattacaggcctgagccatcccacccagcTGGTGAAATTATTAAAATTG-----------TAGTGACAACTCTCCCTCTATTGTGAAATTGG---AAAAAAATTAGACATTTtagaaaaacgtacaccctttggagctaggtagagttcagatccccacgtttccattgactagttgcatagcctctcagagcttcagtttcctactccataagggttagtaacatgctttgcagtgtttttagggatgaatgaaac----tgtgaggtacttaactgcagtatttaacatgaagtaggtagctatttcctggtagctgtaATGATAATAATTTTGATATGTTTTTACATGACTTAAGCATTCTTAAAAGTCTGATGCTTCTGAGTATAGAGACTTAGCTATTTCTTTCATAAAGAAGGGGCCCTGAGACTTGTGAGTCTTATAGTAATGCATTTCTT---AGGT--CATGTAAACTGAAGGATAATGGAAACAATAGCGAGTTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTCGCAGAGT-GCTTGGTGGGGTAGAGCTCTTTGTGACTATGGTATTTAGGAAATAGTGAGAGATGGATTGTTTTCAGTACATCAGTCATAAGAGGATATGAGTTAGTTCCAAC----TTTCTTTATTTT--ACCTTAGTCTTGACAAATAACAAGTGTGGATTATGTCTGTATTTCTCAGACTTGTTTAAGGTAGAACTGGACTGGGTGTTAACTGTGTTGGTTCAGTACAGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACAC-TTTAAAGGTGCCACCATTTACAGAAGAAAGCAGTGATTTAAAGCGGCTATACCAGCACAGTTTAGAATACTT-ACAGTACCCGATGGAGTAGATACATTCTAG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113949277 1301 - 132174527 CTTTGTCAGTAAAGAGTTTTAACATAGTGCAGGCAGAGTATGTATTTGAATTGGGTAAATTATTTTTACTGCCTAGTGGTAGCTAGCGTACACAGGAGGGAGCCACTAACTCTGGGGACTTGTTCAGAATGACAGTTAACTTGGGGCTCTGTAATGAAATGTATTTTAAAAGGATTTTTAGCC----TTTT-----AAAAAATCT----GTTATT--TTTTGAAAAGAAGTGGGGCTTAACTAGTGCTCTAAGGATTTCAACAAGAGATTCCGATTTAGAAATCCC-------ACCCCACC-CCTTGGGTGAAATTAttttttttttttagagccagagta-tcactgtttcccagctttctctaactcctggacccaagccatcctcccacctcagcctcccacagtgttggaattacaggcgtgatccaccccacccagcTGGTGAAATTATTAAAATTGTTGGACAAATCTAGTCACAACTCTCCCTCCATTGGGAAATTGGAAAAAAAAAATGAGAAGTTTTAgaaaaaagtacatgctttggagctaggtaaagttcagatccgcacatttccattgaccagttgcatagcctgtcagagcgtcagtttcctaccccctaagggttagtgacatgctttgcagtgttctcaggaataaatgaagctg--tgtgaggtattt-actacagtacctaacacgaagtaggTAGCTATTTCCTCGTAGCTGTAATGATAATAATTGTGATACGTTTTTACATGACTTAAGCATTCTT--AAGTCTGATGCTTCTAAGTATAGAGGTTTAGCGATTTCGTCCATAAATAAGGGGCCCTGAGACTGGTGAGTCTTATCCAAATGCATTTCTC-AAAGGTGCCAGATGAACTGAAGGATAATGGAAACAGTAGTGAGTTTATCTTCTCAGTCACCTGTTAGTCTTCCTTTGAGAGTGGGACTTGCAGAGTGGCTTGGTAGGGTAGAGCTCTTTGTGGCTGTGGTATTTAGAAAACGGTGAGAGATGGATTGTTTTCAGTATATCAGTCATAAGAGGATATGAGTTAGTTCCAACTTTTTTTCCTTTTTTTTAACCTTAGTCTTGAAAAGTAATAAGTATGGATTATGTC--TATTTCTCAGACTTGTTTAAGGTAGAACTGGACTGGATGTTAACAGTGTTAGTTCAGTACATAGACATGAGCGAGTCACTTCTTTCCCTTTCAAGATAACAC-TTTAAAGGTGCCACCGTTTACAGAAAAAAGCAGCGATTTAAATCAGTTATACTAGTACAGTTTAGAATACTT-ACAGTACGAGATGGAGTAGATACATTCTAG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108            5140161 1297 -  54856640 CTTTGTCAGTAAAGAGTCTTAACATAGTACAGGCACAGTATGTATTTGAATTGGGTAAAGTATTTTTACTGCCTAGTAG----TAGCGTACATAGGAGAGAGCCACTAACTCTGGGGACTTGTCCAAAATGACAATTAACTTGGTGCTCTGTGATGAAATTTATTTTAAAAGGATTTCTAACC----TTTT-----AAAAAATCTGTTGGTTATT--TTTTGAAAAGAAGTGGGGCTTAACTAGTGCTCTAAGGATTTCAACAAGAGATTTCGATTTAGAAATCCT-------ACCC--GC-CCTTGGGTGAAATTA-TTATCttttttagagccggagta-tcactgtttcccagtggtctctaactcctggacccaagccatcctcccacctcagcctcccacagtgttggaattacaggcgtgagccaccccacccagcTGGTGAAATTATTAAAATTGTTGGACAAATCTAGTCACAACTCTCCCTCCATTGGGAAATTGG-GGAAAAAAGTGAGAAATTTTAgaaaaaagcacacgctttggagccaagtggagttcagatccacacatttccattgaccagttacatagcctgtcagagcgtcagtttcctacttcctaagggttagtgacatgctttgcagtgttctcaggaat-aatgaaactatttgtgaggtactt-actacagtacctaacacgaagtaggTAGCTATTTCCTCGTAGCTGTAATGATAATAATTGTGATACGTTTTTACATGACTTAAGCATTCTTAAAAGTCTGATGCTTCTAAGTATAGAGGTTTAGCGATTTCTTCCATAAATAAGGGGCCCTGAGACTTGTGAGTCTTATCCAAATGCATTTCTC-AAAGGTGCCAGATGAACTGAAGGATAATGGAAACAATAGTGAATTTATCTTTTCAGTCACCTGTTAGTCTTCCTTTGAGAGTGGGACTTGCAGAGTGGCATGGTAGGGTAGAGTTCTTTGTGACTGTGGTATTTAGGAAACGGTGAGAGATGGATTGTTTTCAGTACATCAGTCATAAGATGATATGAGTTAGTTCCAAC----TTTCCTTTTTTT--ACCTTAGTCTTGAAAAATAATAAGTATGGATTATGTCCGTATTTCTCAGACTTGTTTAAGGTAGAACTGGACTGGATGTTAACAGTGTTAGTTCAGTACAGAGACATGAGTGAGTCACTCCCTTCCCTTTCAAGGTAACACTTTTAAAGGTGCCACCGTTTACAGAAAAAAGCAGTGATTTAAATCAGTTATGCTAGCACAGTTTAGAATATTT-ACAGTACCAGCTGGAGTAGATACATTCTAG
i saiBol1.JH378108          C 0 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=201769.000000
s hg38.chr15_KI270850v1_alt     68610 248 +    430880 AAATATTTACCTGTagtgggagttgaacagtgagaacacacgg--acacagggaggggggaacatcacacactggggcctgttgggggttggggggctaggggagggatagcattaggagaaatacctagtgtagatgacgagttgatgggtgcagcaaaccaccatggcacgtgtgtacctatgcaacaaacctgcacgttctgcacatataccccagaacttaaagtataataat-aagaaagaaaAAT
s gorGor5.CYUI01015946v1       360632 246 -    378907 AAATATTTACCTGTagtgggagttgaacagtgagaacacacgg--acacaggga-gggggaacatcacacactggggcctgtt-ggggttggggggctaggggagggatagcattaggagaaatacctagtgtagatgacgagctgatgggtgcagcaaaccaccgtggcacgtgtgtacctatgcaacaaacctgcacgttctgcacatataccccagaacttaaagtataataat-aagaaagaaaAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102106979 247 + 121039945 AAATTTTTACCTGTagtgggagttgaacagtgagaacacacgg--acacagggaggggggaacatcacacactggggcctgtt-gggggtggggggctaggggagggatagcattaggagaaatacctgatgtagatgacgagttgatgggtgcagcaaaccaccatggcacgtgtgtacctatgcaacaaacctgcacattctgcacatgtaccccagaacttaaagtataataat-aataaagaaaAAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106472110 245 - 171882078 AAATATTTACCTGTagtgggagttgaacagtgagaacacatgg--acacag----aggggaacatcacacactggggcctgttgcggggtgtggggctaggggcgggatagcattaggagaaatacctagtgtagatgacaagttgatgggtgcagcaaaccactgtggcacgtgtgtacctatgcaacaaacctgcacgttctgcacatgtacgccagaacttaaagtataataataaaaaaagaaAAAT
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       276049 246 +   4111199 AAATATTTACCTGTagtgggagttgaacaatgagaacacatggacacacag----aggggaacatcacacactggggcctgttgggggttggggggctaggggagggatagcattaggagaaatacctaatgtagatgacaagttgatgggtgcagcaaaccaccgtggcgcgtgtgtacctatgcaacaaacctgcacattttgcacatgtatg-tagaacttaaagtgtaacaataaaaaaagaaAAAT
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10             113950578   0 - 132174527 C
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               4013535   0 +  24206276 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378108            5141458   0 -  54856640 C

a score=194870.000000
s hg38.chr15_KI270850v1_alt     68858 89 +    430880 AAATATTTACCTGTTAAGGACA-TTTCTGTGTATTTTATTCCATCTTTCCAATAGTTTTCTTATGAAGAGATTATAGTAAACCTTTGAAC-
s gorGor5.CYUI01015946v1       360878 89 -    378907 AAATATTTACCCGTTAAGGACA-TTTCTGTGTATTTTATTCCATCTTTCCAATAGTTTTCTTATGAAGAGATTATAGTAAACCTTTGAAC-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102107226 89 + 121039945 AAATATTTACCTGTTAAGGACA-TTTCTGTGTATTTTATTCCATCTTTCCAATAGTTTTCTTATGAAGAGATTATAGTAAACCTTTAAAC-
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106472355 90 - 171882078 AAATATTTACCTGTTAAGGACATTTTCTGTATATTTTATTCCATCTTTCCAATAGTTTTCTTATGAAGAGATTATAGTAAACCTTTAAAC-
i macFas5.chr7              C 0 I 17
s chlSab2.chr29               4013535 89 +  24206276 AAATATTTACCTGTTAAGGACA-TTTCTATAGATTTTATTCCATTTTTCCATTAGTTTTCTGATGAAGAGATTGTAGTAAACCTTTAAAA-
i chlSab2.chr29             C 0 I 17
s colAng1.NW_012116021v1       276295 90 +   4111199 AAATATTTACCTGTTAAGGACATTTTCTGTATATTTTATTCCATCTTTCCAATAGTTTTCTTATGAAGAGATTATAGTAAACCTTTAAAC-
i colAng1.NW_012116021v1    C 0 I 347
s calJac3.chr10             113950578 90 - 132174527 AAATACTTATCTGTTAAGGACA-TTTCTATATATTTTATTTCATCTGTTCATTAGTTTTTGTATGAAGAGATTATAGTGAACCTTTAAAAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108            5141458 90 -  54856640 AAATATTTACCTGTTAAGGACA-TTTCTGTATATTTTATTCCATCTTTCCATTAGTTTTTGTATGAAGAGATTATAGTGAACCTTTAAAAA
i saiBol1.JH378108          C 0 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=24629.000000
s hg38.chr15_KI270850v1_alt     68947 24 +    430880 TTA---------------------------------------------------ACAGATTGAGGGTAAACCTTT
s gorGor5.CYUI01015946v1       360967 24 -    378907 TTA---------------------------------------------------ACAGATTGAGGGTAAACCTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102107315 23 + 121039945 TT----------------------------------------------------ACAGATTGAGGGTAAACCTTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106472462 23 - 171882078 TT----------------------------------------------------ATAGATTGAGGTTAAACCTTT
i macFas5.chr7              I 17 C 0
s chlSab2.chr29               4013641 23 +  24206276 TT----------------------------------------------------ACAGATTGAGGGTAAACCTTT
i chlSab2.chr29             I 17 C 0
s calJac3.chr10             113950668 75 - 132174527 TTATATTTGATCACACAGATTGAGGGTAAAAACATTAAAAATTTGAACAAACTTACAGATTGAGGGTAAACCTTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108            5141548 35 -  54856640 TTATATTTGATCAC----------------------------------------ACAGATTGAGGAGAAATCTTT
i saiBol1.JH378108          C 0 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       276385 347 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=117915.000000
s hg38.chr15_KI270850v1_alt     68971 64 +    430880 AAAAAATATATTTGGTCACACT--TACAGACTGAGGGTAAAAACATTCCTGACAAAGCTAGGCGAA
s gorGor5.CYUI01015946v1       360991 64 -    378907 AAAAAATATATTTGGTCACACT--TACAGACTGAGGGTAAAAACATTCCTGACAAAGCTAGGCGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102107338 64 + 121039945 AAAAATTATATTTGGTCACACT--TACAGATTGAGGGTAAAAACATTCCTGACAAAGCTAGGCAAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106472485 66 - 171882078 AAAAATTATATTTGGTGACACTTATACAGAGTTAGGGTAAAAACATTCCTGACAAAGCTAGGCAAA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4013664 64 +  24206276 AAAAATTATATTTGATCACACT--TACAGATTGAGGGTAAAAACATTCCTGACAAAGCTAGGCGAA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       276732 64 +   4111199 aaaaaTTATATTTGGTGACACT--TACAGAGTGAGGGTAAAAACATTCCTGACAAAGCTAGGCAAA
i colAng1.NW_012116021v1    I 347 C 0
s calJac3.chr10             113950743 64 - 132174527 AAATATTATATTTGATCACACT--TTGAGATTAAGGGTAAAGACATTCCTGACAAAGCTAGGCGAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108            5141583 39 -  54856640 AAAAATTATATTCGATCACACT--TAGAGATTGAGGATAAA-------------------------
i saiBol1.JH378108          C 0 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=29887.000000
s hg38.chr15_KI270850v1_alt     69035 34 +    430880 GACACTTGGAC---------ttttttttttttttgagacggag
s gorGor5.CYUI01015946v1       361055 35 -    378907 GACACTTGGAC--------tttttttttttttttgagacggag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102107402 38 + 121039945 GACACTTGGAC-----TCttttttttttttttttgagatggag
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106472551 43 - 171882078 GAGACTTGGAAtttgtttttgtttttttttttttgagaaggaa
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       276796 39 +   4111199 GAGAGTTGGAC----TGtttctttttttctttttgagaaggaa
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113950807 40 - 132174527 GAAACTTGGAC---TTTTGATGTTCCACACTTTTGAGATTGAG
i calJac3.chr10             C 0 I 31
s saiBol1.JH378108            5141622 28 -  54856640 ---------------ttttttttttttttttttttagacggag
i saiBol1.JH378108          C 0 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               4013728  0 +  24206276 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=303797.000000
s hg38.chr15_KI270850v1_alt     69069 266 +    430880 tctcgctc-tgtcacccaggctggagtgcagtagcacgatcttggctcactgcaacctctgcttccccggttgaagcgaatcttctgcct----ctcccgagtagctgggactacaggcacacgccaccatgcctgactaattttt--tatttttagtagagacggggtttcaccatattgaccaggctggtcttgaactcctgacctcgtgatccacccacctcagcctcctaaagtgctgggattacaggcatgagccactgcacccggcT
s gorGor5.CYUI01015946v1       361090 267 -    378907 tctcgctc-tgtcacccaggctggagtgcagtagcacgatcttggctcactgcaacctctgcttccccagttgaagcgaatcttctgcct----ctcccgagtagctgggactacaggcacacgccaccatgcctgactaattttt-gtatttttagtagagacggggtttcaccatattgaccaggctggtcttgaactcctgacctcgtgatccacccacctcagcctcctaaagtgctgggattacaggcatgagccactgcacccggcc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102107440 267 + 121039945 tctgtccc-tgtcacccaggctggagtgcagtggcacgatcttggctcactgcaacctctgcttccccggttgaagcgaatcttctgtct----ctcccgagtagctgggactacaggcacgtgccactatgcctgactaattttt-gtatttttagtagagacggggtttcaccatattggccaggctggtcttgaactcctgacctcatgatccacccgcctcagcctcctaaagtgctgggattataggcatgagccaccgcgcccagcc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106472594 267 - 171882078 tctcactc-tgtcacccaggctggagtgcagtggtgcgatcttggttcactgcaacctctgcctcccgggttcaagcgaatcttctgcct----ctgccgagtagctgggactataggcacgcaccaccatgtcttgctaactttt-gtatttttagtagagctggggtttcaccatattggccaggatggtcttgaactcctgacctcgtgatccccccgccttggcctccgaaagtgctgggattacaggcatgagccaccgcgcctgTCT
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       276835 266 +   4111199 tctcactc-tgtcacccaggctggagtgcagtggtgtgatcttggctcactgcaacctccacctcccaggttcaagcgaatcttctgcct----ct-ccgagtagctgggactacaggcatgcaccaccatgtcttgctaactttt-gtatttttagtagagatggggtttcaccatattggccaggatggtctcgaactcctgacctcgtgatccacccgcctcggcctccgaaagtgctgggattacaggtgtgagccaccacgcctgTCT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108            5141650 272 -  54856640 tttcgctcttgttacccaggctggagtgcaatggcacgatctcggctcaccgcaacctccgcctcctgggttcaggcaattctcctgcctcagcctcctgagtagctgggattacaggcacatgccaccatgcccagctaattttttgtatttttag-aaagacggagtttcaccatgttgaccaagacagtctcgatctcttgacctcgcgatccacccgcctcggcctcccaaagttctgggattacaggcttgagccaccacgcccggcT
i saiBol1.JH378108          C 0 I 154
e calJac3.chr10             113950847  31 - 132174527 I
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               4013728   0 +  24206276 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=44344.000000
s hg38.chr15_KI270850v1_alt     69335 18 +    430880 GAAACTTGGACTTTTGAT
s gorGor5.CYUI01015946v1       361357 18 -    378907 GAAACTTGGACTTTTGAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102107707 18 + 121039945 GAAACTTGGACTGTTGGT
i nomLeu3.chr6              C 0 I 17438
s macFas5.chr7              106472861 18 - 171882078 GAAACTTGGACTTTTGAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4013728 18 +  24206276 GAAACTTGGACTTTTGAT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       277101 18 +   4111199 GAAACTTGGACTTTTGAT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113950878 18 - 132174527 GAAACTTGGACTTTTGAT
i calJac3.chr10             I 31 C 0
s saiBol1.JH378108            5142076 18 -  54856640 GAAACTTGGACTCTTGAT
i saiBol1.JH378108          I 154 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=735229.000000
s hg38.chr15_KI270850v1_alt     69353 465 +    430880 GTTTCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGATGGGGACAGGCATCCATTTGGAAGTAGCTTCCC--TCTCTCTC--TCTTTCCCAGGTTAGGCTGTCTTATTGCTGTAAATGGGGAGAGAAGAGAAAGCCGTGGGTGGAAGAAAG--TGTTTCATggcctggtgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggtggatcacttgagttcaggagttcaagaccagcctggccaacatggtgaaaccccgtttctactaaaaacagaaaaattagctgggcatggtggcgggcacctgtaatcccagctacttgggaggctgaggcaggagaatcactt-gaacccaggagatggaggttgcagtgagccgagattgcaccacttcactccagcctggtcgacagagcgagaccttgtctc-aaaaaaaaaa
s gorGor5.CYUI01015946v1       361375 465 -    378907 GTTTCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGATGGGGACAGGCATCCATTTGGAAGTAGCTTCCC--TCTCTCTC--TCTTTCCCA-GTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAAGAGAAAGCCGTGGGTGGAAGAAAG--TGTTTCATggcctggtgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggtggatcacttgagttcaggagttcaagaccagcctggccaacatggtgaaaccccgtttctactaaaaacagaaaaattagctgggcatggtggcgggcacctgtaatcccagctacttgggaggctgaggcaggagaatcactt-gaacccaggagatggaggttgcagtgagccgagattgcaccacttcactccagcctggtcaacagagcgagaccttgtctcaaaaaaaaaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106472879 469 - 171882078 GTTCCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGATGGGGACAGACATCCATTTGGAAGTAGCTTTCC--TCTCTCTCTGTCTTTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAAGAGAAAGCTGTGGGTGGAAGAAAGTTTGTTTCATAgcctggcgtggtggctgatgcctgtaatcccagcactttgggaggccgaggtgggtgggtcacttgagttcaggagttcaagaccagcctggccaacatggcgaaaccccgtctctactaaaaatagaaaaattagctgggcatggtggcggtcacctgtaatctcagctgcttgggaggctgaggcaggagaattactt-gaacccggtcagtggaggttgcagtgagctgagattgcaccacttttcttcagcctggtggacagagcaagacctcgtctc-aaaaaagaag
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4013746 469 +  24206276 GTTCCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGATGGGGACAGGCGTCCATTTGGAAGTAGCTTCCC--TCTCTCTCTGTCTTTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAGGAGAAAGCTGTGGGTGGAAGAAAGTTTGTTTCATAgcctggcgcagtggctgatgcctgtaatcccagcactttgggaggccgaggcgggcagatcagttgaggtcaggagatcaagaccagcctggccatcatggtgaaaccccatctctactaaaaatacagaaactaccccagcagggtggcggatgcctttaatcccagctacttgggaggctgaggcaggagaatcactt-gaacccgggaggtggaggttgcagtgagccgagatcatgccactgcactccagcctgggcaacagagtgagactccatctc-aaaaaaaaaa
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       277119 471 +   4111199 GTTCCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGCTATTACTGATGGGGACAGGCGTCCATTTGAAAGTAGCTTCCCTGTCTCTCTCTGTCTTTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAAGAGAAAGCTGTGTGTGGAAGAAAGTTTGTTTCATggcctggcacggtgggtcatgcctgtaatcccagcattttgggaggctgaggtgagtggatcacttgagttcagacgttgaagaccagcctggccaacatggcgaaaccccgtctctactaaaaatagaaaaattagctgggcatggtggcgggcacctgtaatctcagctacttgggaggctgaggcaggagaattgctt-gaacccagtcgatggaggttgcagtgagctgagattacaccacttcacttcagcctggtcaacagagcaagacctcgtctc-aaaaaagaag
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113950896 469 - 132174527 GTTCCCTTCATTTAACGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGAGGGGGACAGGCGTCCATTTGGAAGTAGCTTCCC--TCTCTCACTCTCTCTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAGGAGAAAGCTGTTGGTGGAAGAAAGTTTGTTTCATggcctggctcagtggctcacgcctgtaattgcagcattttgggaggccgaggtcagcggatcacttgaggtcaggaattcaagacccgcctgggcaacatggcgaaaccctgtctctactgaaaatacaaaaattagccaggcgttgtggcagacg-gtgtaatcctggctactggggaggctgaggcaggaaaatcgcttccaacttgggaggtgaaggttgcagtgagccgagatcacgccactgcactccagcctatgtgacagagtgtgactctatttc-aaaaaaGGAA
i calJac3.chr10             C 0 T 89514
s saiBol1.JH378108            5142094 465 -  54856640 GTTCCCTTCATTTAAAGTTAGCATCTAGCCCTTGAATAGACTTGGTTATTACTGATGGGGAC-GGCATCCATTTGGAAGTAGCTTTCC--TGTCTCA--CTGTTTCCCAGGTTAGGCTGTCTTAGTGCTGTAAATGGGGAGAGAGGAGAAAGCCGTTGGTGGAAGAAAGTTTGTTTCGTggcctggctcagtggctcacgcctgtaattgcagcattttgggaggccgaggtgggcggatcacttgaggtcaggagttcaagaccagcctggtcaacatgacgaaaccccgtctctactgaaaatacaaaaattagccaggtgttgtgataggtg-gtgtaatcccggctactcaggaggctgaggcaggaaaatcgctt-caacttgggaggtgaatattgcagtgaactgagatcacaccactgcactccagcctatgtgacagagtatgactctgtctc-gaaaaaaaaa
i saiBol1.JH378108          C 0 C 0
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102107725 17438 + 121039945 I

a score=8586.000000
s hg38.chr15_KI270850v1_alt     69818 10 +    430880 aaaaaaaaaa
s gorGor5.CYUI01015946v1       361840 10 -    378907 aaaaaaaaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106473348 10 - 171882078 aaagaaagat
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4014215 10 +  24206276 aaaaaaaaaa
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       277590 10 +   4111199 aaagaaagat
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108            5142559 10 -  54856640 aaaaaaGTAA
i saiBol1.JH378108          C 0 N 0
e calJac3.chr10             113951365 89514 - 132174527 T
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102107725 17438 + 121039945 I

a score=-3508.000000
s hg38.chr15_KI270850v1_alt     69828 3 +    430880 a--aa
s gorGor5.CYUI01015946v1       361850 3 -    378907 a--aa
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106473358 1 - 171882078 a----
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4014225 3 +  24206276 aaa--
i chlSab2.chr29             C 0 n 0
s colAng1.NW_012116021v1       277600 1 +   4111199 a----
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102107725 17438 + 121039945 I

a score=360023.000000
s hg38.chr15_KI270850v1_alt     69831 715 +    430880 gtgtcccactcagttgcccaggctgaaacgcagtggcaggatcactgctcactgcagccttgaaccaagcgattatcccacctcagcctcccaagtagctgggatcacatgcatgcactgccatgcctggctaatttttttatttttgtagagacagggtctctctatgttgcccagcctggtctcaaactcccgggatgaagcaatcctcccaccatggtctcccaaagtgtagggcttacaggcgtgag-------------agcctgctggggtttttgattgacattgcattgaaactggaaatcagttaggaggcaactgacattttaataatgagccatgaacatggtatatctatttatttagaccttcttagatttttcgtcagtgttttgtagtttttagcagttggatcttgcttgtattttgtaatcttacacatttatttcatgt-ttgtggtactgttgtgaatgatacttctcaatttccagttggtgattgctagtatataggaaggtgattttatgttatatgctgaccttggattctacaaccttgctaaactcatttttagtactagaagcttttttgtagatttttggaattttgtgcatagacagtaatgtcactggcaaa--taagggcagtttaatttctttgttttcactttgtatgcttttatttcc------ttttttttttttGAGACGGAGTTTCTCTCTTGTTGCCCAG
s gorGor5.CYUI01015946v1       361853 727 -    378907 gggtcccactcagttgcccaggctgaaacgcagtggcaggatcactgctcactgcagccttgaaccaagcgattatcccacctcagcctcccaagtagctgggatcacatgcatgcaccgccatgcctggctaatttttttatttttgtagagacagggtctctctatgttgcccagcctggtctcaaactcccgggatgaagcaatcctcccaccatggtctcccaaagtgtagggcttacaggcgtgagagccaccatgcccagcctgctggggtttttgattgacattgcattgaaactggaaatcagttaggaggcaactgacattttaataatgagccatgaacatggtatatctatttatttagaccttcttagatttttcgtcagtgttttgtagtttttagcagttggatcttgcttgtattttgtaatcttacacatttatttcatgt-ttgtggtactgttgtgaatgatacttctcaatttccagttggtgattgctagtatataggaagatgattttatgttatatgctgaccttggattctacaaccttgctaaactcatttttagtactagaagcttttttgtagatttttggaattttgtgcatagacagtaatgtcactggcaaa--taagggcagtttaatttctttgttttcactttgtatacttttatttcc-------tttttgtttttgagacggagtttctctcttgttgcccag
i gorGor5.CYUI01015946v1    C 0 I 10892
s macFas5.chr7              106473359 731 - 171882078 gggtcccactcagttgcccaggctgaaacgcagtggcaggatcactgctcactgcagccttgacccaagtgattatcccacctcagcctcccaagtaactgggctcacatgcatgcaccaccatgcctggctaatttttttgtttttgtagagagaggatctctctatgttgcccaggctgctcttaaactccttggatgaagtgatcctctcaccgtgaactcccaaagtgtagggcttacaggtgtgag--ccaccatgctcagcctgctggggtttttgattggcattgcattgaagctggaaatc----aggaggcaattgacgttttaataacgagccatgagcatggtatatctatttatttagacctttttagatttttcatcagtattttgtagtttttagcaattggatcttgcatgtattttgtaatcttatatatttatttcatgggttgtgatgctgttgtgaatgatacttttcaatttccagttggtcgttgctaggctataggaagatgattttatgttacatgctgaccttggattctacaaccttgctaaactcatttttagtgctagaagcttttttgtaaatttttggaattttgtgcatggacagtaatgtcactgccaaatttaagggcagtttaatttcttcattttcactttgtatacttttattttctttcttttttttttttctgagacgcagtttctctcttgttgcccag
i macFas5.chr7              C 0 I 30845
s colAng1.NW_012116021v1       277601 721 +   4111199 gggtcccactcagttgcccaggctgaaacgcagtggcaggatcactgctcactgcagccttgacccaagtgattatcccacctcagcctcccaagtaactgggctcacatgcatgcaccaccatgcctggctaatttttttgtttttgtagagagaggatctctctatgttgcccaggctggtctcaaactcctgggatgaagtgatcctctcaccgtgaactcccaaagtgtagggcttacaggtgtgag--ccaccatgctcagcctgctggggtttttgattggcgttgcattgaagctggaaatc----aggaggcaattaacattttaataacgagccatggccatggtgtatctatttatttagaccttcttagatttttcatcagtgttttgtagtttttagcaattggatcttgcatgtattttgtaatcttatatatttatttcatgtgttgtggtgctgttgcgaatgatacttttcgatttccagttggtcattgctaggatataggaagatgattttatgttacatgctgaccttggattctacaaccttgctaaactcatttttagtactagaagcttttctgtagatttttggaattttgtgcatagacagtaatgtcactgccaaa--taagggcagtttaatttcttcattttcactttgtatacttttcttttc--------ttttttttctgagacgcagtttctctcttgttgcccag
i colAng1.NW_012116021v1    C 0 I 16181
e calJac3.chr10             113951365 89514 - 132174527 T
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               4014228   0 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102107725 17438 + 121039945 I

a score=0.000000
s hg38.chr15_KI270850v1_alt     70546 12 +    430880 TAAATTAGCCCA
e calJac3.chr10             113951365 89514 - 132174527 T
e otoGar3.GL873530           29688183 96407 +  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       278322 16181 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               4014228  0 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7              106474090 30845 - 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102107725 17438 + 121039945 I
e gorGor5.CYUI01015946v1       362580 10892 -    378907 I

a score=4104.000000
s hg38.chr15_KI270850v1_alt     70558 30 +    430880 TGTAAATATTTCTGTTTGTATCTCTTGAAA
s gorGor5.CYUI01015946v1       373472 30 -    378907 tgtaaatatttctgtttgtatctcttgaag
i gorGor5.CYUI01015946v1    I 10892 C 0
s otoGar3.GL873530            6738933 28 -  36342412 tgtaaat-tttcaggatgtgt-tctagaag
i otoGar3.GL873530          n 96407 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       278322 16181 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               4014228  0 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7              106474090 30845 - 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102107725 17438 + 121039945 I

a score=47179.000000
s hg38.chr15_KI270850v1_alt     70588 117 +    430880 GTAAAGACTCTTTTAACCATGGATGAGTGTCTTGATCAAATCAACATGGCTTGTTCATGTCGATACCATTTGCTCAGAGGGGAAAGATTAAGGGAAAAATGGGGTTGGATTTCAAAT
s gorGor5.CYUI01015946v1       373502 117 -    378907 gtaaagactcttttaaCCATGGATGAGTGTCTTGATCAAATCAACATGGCTTGTTCATGTCGATACCATTTGCTCAGAGGGGAAAGATTAAGGGAAAAATGGGGTTGGATTTCAAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s cebCap1.NW_016107979v1       267949 117 -   1024465 GTAAAGACTCTTCTAAACGTGGATGAGTGTTTTGATAAAATCAACATGGCTTGTGCATGGCCGTACCATTTGTTTAGAAGGGAAAGATCAAAGGGAAAATGGGGTTGGATTTCAAAT
i cebCap1.NW_016107979v1    N 0 I 615
s otoGar3.GL873530            6738961 114 -  36342412 ataatgattcttttaaaTATGGATGAGTGTTTTGATAAAATCCACATGGCTTGTTCATGTTGATACCATGTACTTAGAAAGAAGAG---CAAGGCAAAGTACAGTTGCATTTCAGAT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       278322 16181 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               4014228   0 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7              106474090 30845 - 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102107725 17438 + 121039945 I

a score=13030.000000
s hg38.chr15_KI270850v1_alt     70705 55 +    430880 GCCAGGACCTGTCTACTGGGTTTGTGATTTGTTATTCTCT--AAAGTTGTAGCTCTT
s gorGor5.CYUI01015946v1       373619 55 -    378907 GCCAGGACCTGTCTACTGGGTTTGTGATTTGTTATTCTCT--AAAGTTGTAGCTCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s otoGar3.GL873530            6739075 57 -  36342412 GGCAGGAGCTGTTTACTGGGTTTGTGATTTGTTATTCTCTAAAAAGTTATAACTCTT
i otoGar3.GL873530          C 0 I 5
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       268066 615 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       278322 16181 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               4014228  0 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7              106474090 30845 - 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102107725 17438 + 121039945 I

a score=3398.000000
s hg38.chr15_KI270850v1_alt     70760 9 +    430880 AAAACAAAG
s gorGor5.CYUI01015946v1       373674 9 -    378907 AAAACAAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s saiBol1.JH378276             481528 9 -   3282555 aaaaaaaaa
i saiBol1.JH378276          N 0 C 0
s otoGar3.GL873530            6739137 9 -  36342412 AAAAAAAGg
i otoGar3.GL873530          I 5 I 142
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       268066 615 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       278322 16181 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               4014228 0 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7              106474090 30845 - 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102107725 17438 + 121039945 I

a score=60533.000000
s hg38.chr15_KI270850v1_alt     70769 189 +    430880 AAAGGAGTGAGTTTGGCCTATTCATTAACTTTTACTCTTTAGACAGTTCAAATGTTTATTGAGTTCTTCTACAGGCCGAGCCCTGCCTTCTTCATGC---TTACCAAGAAGCATTTTT-ACGCGGTTTCTCTAATGTTTGGGTGGAC-GGTACCTCACTAAGTTGTTTTTCACGCACGTGCGTGCTCGTTCCTG
s gorGor5.CYUI01015946v1       373683 189 -    378907 AAAGGAGTGAGTTTGGCCTATTCATTAACTTTTCCTCTTTAGACAGTTCAAATGTTTATTGAGTTCTTCTACAGGCCGAGCCCTGCCTTCTTCATGC---TTACCAAGAAGCATTTTT-ATGCGGTTTCTCTAATGTTTGGGTGAAC-GGTACCTCACTAAGTTGTTTTTCACGCACGTGCGTGCTGGTTCCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s saiBol1.JH378276             481537 181 -   3282555 aaaGCAGTGAGTTTGACCTATTCTTTAA-TTTTCCTCTTTAGACAGTTTaaatatttattgagttcctctacatgccaggccctgtCTTCTTTATGCTTATTACCAAGAAGCATCCTTAATGGAATTTCTCTAATGTTTGGGAA------------ACTCGGTTGTCTTTTACACACATGGATGCTAGTTCCTG
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6739288 184 -  36342412 AAGGTAATAAGTTTGACCTATTCTTTAACTTTTCCTTTTTAGACTACTCAGGTATTTATTTAGCTCCTCTACATGGTGGGCCGTGTGTTCTTCATGT---CCACCTAGAAGCATCCTT-ATGTAGTTTCTGTCATGTTTGAGTGAATAAGTACTT------GTCCTTTGTAACATGCGTGTTAGTTAGTTTCTG
i otoGar3.GL873530          I 142 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       268066 615 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       278322 16181 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               4014228   0 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7              106474090 30845 - 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102107725 17438 + 121039945 I

a score=104688.000000
s hg38.chr15_KI270850v1_alt     70958 76 +    430880 AAGAGTCCTGTCCAGGTGCCCTGCCCGCTTTTCCTTTCAGGCTTCTGTATCAGCTGC---CGTTTCCCTATAGAACGTG
s gorGor5.CYUI01015946v1       373872 76 -    378907 AAGAGTCCTGTCCACGTGCTCTGCCCGCTTTTCCTTTCAGGCTTCTGTATCAGCTGC---CGTTTCCCTATAGAATGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18835388 76 - 121039945 AAGAGTCCTGTCCAGGTGCTCTGCCCGCTTTTCCTTTCAGGCTTCTATATCAGCTGT---TTTTCCCCTGTAGAATGTG
i nomLeu3.chr6              n 17438 I 1
s macFas5.chr7               65240125 76 + 171882078 AACAGTCCTGTACAGGCGCTCTGCCCGCTTTTCCTTTCAGGCTTCTGTATCAGCTAT---TTTTCCCCTGTAGAATGTG
i macFas5.chr7              n 30845 I 1
s chlSab2.chr29               3815439 76 +  24206276 AAGAGTCCTGTACAGGTGATCTGCCCGCTTTTCCTTTCAGGCTTCTGTATCAGCTGT---TTTTCCCCTGTAGAATGTG
i chlSab2.chr29             n 0 I 1
s saiBol1.JH378276             481718 79 -   3282555 AAGAGTCATATAGAGGTACTCTGCAGGCTTTTCCTTTCAGACTTTTGTGTCAGCTACAGGCTTCCCCTTGTAGAATGTG
i saiBol1.JH378276          C 0 I 1
s otoGar3.GL873530            6739472 76 -  36342412 AATAATGCCCTAAAGACACTGTGTCCCCTTTTTCTTTCAGGCTTCTGTATCAGCTGT---TGTTCCCATGAGGAATGTG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       268066 615 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       278322 16181 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=748924.000000
s hg38.chr15_KI270850v1_alt     71034 461 +    430880 CCCTGACCTCCACC--CCTTAACCCT------AACCAATTTGCCTT--TACATGTCTGACCATCCATCAAGGCTCTTTTGGGTCATATTCAGTCCATGTTGATATTTCCCCTTCCTCCCTTCTTTAGTCCTTACTATTTTTGCTTTGGTCATGTTTTCTTACACTGTATTCTG-----------------TAAGCCTGTT--T------------------AATTTTTTT---ATGGTGGCAGGGGAA--------------------------------------------------------------------------------------------------------------------------------------------------------AATATT--TCATAATTAT-----------GCTTTGTGCTTTTT--------------------------------------------ATCTTCCACTCAATAAATGCTTGGTAAATATTTGTTTTATTGAATGTATGAGCCTATTCTAGCTATATTGTGC-TTGAACAAAAATCTTAACTGCCTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTGCAGAGATAACATCAAGAGCTTGTCATGGATAGTAC-AAAAAGGTCTCTAAGGGCTTGATGGAAGTCTGTAAATTGACTTCCTATGAAAGAGAGTGTAAGAAGTGA--
s gorGor5.CYUI01015946v1       373948 460 -    378907 CCCTGACCTCCACC--CCTTAACCCT------AACCGATTTGCCTT--CACATGTCTGACCATCCATCAAGGCTCTTCTGGGTCATATTCAGTCCATGTTGATATTTCCCCTTCCTCCCTTCTTTAGTCCTTACTATTTT-GCTTTGGTCATGTTTTCTTACGCTGTATTCTG-----------------TAAGCCTGTT--T------------------AATTTTTTT---ATGGTGGCAGGGGAA--------------------------------------------------------------------------------------------------------------------------------------------------------AATATT--TTATAATTAT-----------GCTTTGTGCTTTTT--------------------------------------------ATCTTCCACTCAATAAATGCTTGGTAAATATTTGTTTTATTGAATGTGTGAGCCTATTCTAGCTATATTGTGC-TTGAACAAAAATCTTAACTGCCTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTGCAGAGATAACATCAAGAGCTTGTCATGGATAGTAC-AAAAAGGTCTCTAAGGGCTTGATGGAAGTCTGTAAATTGACTTCCTGTGAAAGAGAGTGTAAGAAGTGA--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18835465 454 - 121039945 CCCTGACAGCCACC--CCCTAACCCT------ACCCAATTTGTCTT--TACGCGCCTGA----CCATCAAGGCTCTTCTGGGTCATATTTAGTTTGTGCTGATGTTTCCCCTTCCTCCCCTCTTTAGTCCTCACTATTTTTGCTTTGGTCATG-----TTATGCTGTATTCTG-----------------TAAG---GCT--T-------------AAAAAAACTTTTTT---ATGGTGGCAGGGGAG--------------------------------------------------------------------------------------------------------------------------------------------------------AATGTT--TTATAAGTAT-----------GCTTTGTGCTTTTT--------------------------------------------ATCTTCCACTCAATAAATGCTTGGTAAATGTTTGTTTTATTGAATGTATGACCCTATTCTAGCTATATTGTGC-TTGAACAAAAATCTTAACTGCTTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTGCAGACATAACTTCAAGAACTTGTCATGGATAGTAC-AAAAAGGTCTCTAAGGGCTTGATGGAAGTCTGTAAATTGACTCCCTATGAAAGAGAGTGTAAGAAGTGA--
i nomLeu3.chr6              I 1 C 0
s macFas5.chr7               65240202 455 + 171882078 CCCTGACAGCCACC--CACTAACCCT------ACCCAATTTGTCTT--TACATGTCTGA----CCACCAAGGCTCTTCTGGGTCATATTTTGTTCATGCTGATATATCACCTTCCTACCCTCTTTAGTCCTTACTATTTTTGCTTTGGTCATG-----TTATGCTGTATTCTG-----------------TAAGCCTTTT--T------------------ACTTTTTTTAAAATGGTGGCAGGGGAG--------------------------------------------------------------------------------------------------------------------------------------------------------AATATT--TTATAATTAT-----------ACTTTGTGCTTTTC--------------------------------------------ATCTTCCACTGAATAAATGCTTGGTAAATATTTGTTTTATTAAGTGTGTGATTCTATTGTCACTACATTGTGC-TTGAACAAAAATCTTAACTGCCTTGTAAGTTAACTGCTAAGAATGTGTCAAAAGTGCAGAGATAACATCAAGAACTCGTCATGGATAGTAC-AAAAAGGTCTCTAAGGGCTTGATAGAAGTCTGTAAATTGACTTCATATGAAAGAGAGTGTAAGAAGTGA--
i macFas5.chr7              I 1 I 2313
s chlSab2.chr29               3815516 455 +  24206276 CCCTGACAGCCGCC--CCCTAACCCT------ACCCAATTTGTCTT--TACATGTCTGA----CCACCAAGGCTCTTCTGGGTCATATTTTGTTCATGCTGATATGTCACCTTCCTCCCCTCTTTAGTCCTTACTATTTTTGCTTTGGTCATG-----TTATGCTGTATTCTG-----------------TAAGCCTTTT--T------------------ACTTTTTTTTAAATGGTGGCAGGGGAG--------------------------------------------------------------------------------------------------------------------------------------------------------AATATT--TTATAATTAT-----------ACTTTGTGCTTTTC--------------------------------------------ATCTTCCACTGAATAAATGCTTGGTAAATATTTGTTTTATTAAGTGTGTGATCCTATTGTCACTATATTGTGC-TTGAACAAAAATCTTAACTGCCTTGTAAGTTAACTGCTAAGAATGTGTCAAAAGTGCAGAGATAACATCAAGAACTCGTCATGGATAGTAC-AAAAAGGTCTCTAAGGGCTTGATGGAAGTCTGTAAATTGACTTCATATGAAAGAGAGTGTAAGAAGTGA--
i chlSab2.chr29             I 1 I 2675
s saiBol1.JH378276             481798 442 -   3282555 CCCTGAGCCCCACC--CCTTAACCCT------ACCCAATTTGTCTT--TATATGCCTGATCATCCCTCAAGGCTCTTCTGGGTCCTACTCAGTTCATGCTGATATTTCCCCTTCTTCCCCTCTTGAGACATTACTCTTTTTGGGTTGGTTATGTTTTCTTATGCAGTATTCTG-----------------TAAGCCTTAA---------------------TTTTTTTTT---ATGATGGCAGGGGAG--------------------------------------------------------------------------------------------------------------------------------------------------------AAT-------ATAATTAT-----------GCTTTGTTCTTTTT--------------------------------------------ATCTTCCACTCAATAAATGCTTCGTAAATATTTAT---------TATGTGACCCTATTCTAGCTATATTGTAT-TTGAACAAAAATCTTAACTGCCTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTTTAGAGATAAGATCAAGAACTTGTCATGGGTAGTAC-AAAAAGGTCAATAAGGGCTTGATG--AGTCTGTAAATTGACTTAATATGAA--AGAGTATAAGAATTGA--
i saiBol1.JH378276          I 1 C 0
s cebCap1.NW_016107979v1       268681 448 -   1024465 CCCTGACCCCCACC--CCTTAACCCT------ACCCAATTTGTCTTTATATATGCCTGATCATCCCTCAAGGCTCTTCTGGGTCATATTCAGTTCATGCTGATAATTCCC---CTTCCTCTCTTTAGATATTACTATTTTTGGTTTGGTTATGTTTTCTTATGCAGTATTCTG-----------------TAAGCCTTAAAAT------------------AATTTTTTT---ATGGTGGCAGGGGAG--------------------------------------------------------------------------------------------------------------------------------------------------------AAT-------ATAATTAT-----------GCTTCGTGCCTTTT--------------------------------------------ATCTTCCACTCAATAAATGCTTCGGAAATATTTAC-----TGAGTATATGACCCTATTCTAGGTATATTGTAT-TTGAACAAAAATCTTAGCTACCTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTTTAGAGATAAGATCAAGAACTTGTCATGGGTAGTACAAAAAAGGTCAATAAGGGCTTGATG--AGTCTGTAAATTGACTTAATATGAA--AGAGTATAGGAAGTG---
i cebCap1.NW_016107979v1    I 615 C 0
s otoGar3.GL873530            6739548 704 -  36342412 ------CCTCCAACTTCTCTAACCCTTACCAGACCCAGCCTATCTT--T-CAAATCTGACTATCCCTCAAGGCCTTTCTGGGTCATACGTAGTCCATGCTGATATTTCCCCTTGCTCC---CTTTAGTCCTTACTATTTCTATCTTGGTTATGTTTT-TTATACTGTATTCTATTACAGTTTGGGGTGTTTAAGCCTTTT--tttttttttttttaattaaatttttttt---tttgtagagatggagtctcactgtgttacccccaggctactctcactcctgatctcaagtgatcctcctgccttggcgtctcaaagtcttagaattagaggtgtcagctactacatctagccTTGTATCTtttttatttttatttgcttttattatttttattttttaatttttgttATATTTATTATGTTTTTTAGCCTTATGTCTTTTTTAAAAGGTTTTTTTTATGGCAGCAAGGGAGAAAATTTTCATTCAccttctactcagtaaatgctcagtaaatatttgttTTACTGACTATATGGCCTCATTCTAGCTATATTCTACTTTGAACAGAAATCTTAACTACCTTGTGGGTTTGCTGCCAAGAGGTTGTAAAAATTGCAGAGATAATACCAAGAATAT-TCGTGGACAGTAT-GAAAAGGTCATTGAAGGCTTATAGGAAATCTGTACATTGACTTCATATGAAAGACAGTGTAAGAAATGGGA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       278322 16181 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=307801.000000
s hg38.chr15_KI270850v1_alt     71495 521 +    430880 AAAAAAGCAAAACAGA-GTAGATGTTTTACTCTGTTTGCCAAGGGATTTGTGCT-------ATTTTTTTCCTGTTTTAT---AAATTTGCCCTAATCTTAAATAATGAAGGGAAAAGAGCACTCTTTTTCAAC--CAAGGAATCCTTTTTA-TACTTCTTTTCTGTGAAGCCATGTTATGAAAGATTGTTATACAAACTTAAGTATAGTTTTTCCATCTTCAGT-AACAGACCTGATTGCCATCTAG---------TTACTGGTT-CTGATCACACAAGaatgcaaagcagcttgttctaataacttgtgcaggcctattgggaactagtatatgg----ctttgagtccttttgaagtatttaacataatttggcaattccattactccttttatggacttcttggcatctatgaactcttggtagggaatcactgTTTTAGAATGAAAAATGtctcccaggaagtaaattagccggtaaacaaatgaaa------cttcattttt-tatatgacttgtagagcataaattattactc-tttctgcataagtggctg
s gorGor5.CYUI01015946v1       374408 520 -    378907 AAAAAAGCAAAACAGA-GTAGATGTTTTACTCTGTTTGCCAAGGGATTTGTGCT-------GTTTTTTTCCTGTTTTAT---AAATTTGTCCTAATCTTAAATAATGAAGGGAAAAGAGCACTCTTTTTCAAC--CAAGGAATCCTTTTTA-TACTTCTTTTCTGTGAAGCCATGTTATGAAAGATTGTTATACAAACTTAAGTGTAGTTTTTCCATCTTCAGT-AACAGACCTGATTGCCATCCAG---------TTACTGGTT-CTGATCACCccaaaatgcaaagcagcttgttctaataacttatgcaggcctattgggaactagtatatgg----ctttgagtccttttgaagtatttaacataatttggcaattccattactccttttgtggacttcttggcatctatgaactcttggtagggaatcactgTTTTAGAATGAAAAATGTCTcccaggaagtaaattag-cggtaaacaaatgaaa------cttcattttt-tatatgacttgtagagcataaattattactc-tttctgcataagtggctg
i gorGor5.CYUI01015946v1    C 0 C 0
s saiBol1.JH378276             482240 527 -   3282555 -AAAAAAAAAAAAACA-GTAGATGTTTTACTCTATAGGCCAAGGGAATTGAGCTAATTGTAATTATTTTTCTGTTTTAT---AAATTTGTCCTACTCTTAAA-AATGAAGGG-AAAGAGCACTCTGTTCCATCCTCAAGGAATCATTTTTATTAC-----TTCTGTGAAGCCAAGTTACGAGAGATTGTTACACAAACTTAAGTACAGCTTTTCCATCTTCAGTAAACTAACCTGATTGCCATCTAA---------TTagtggtt-acaatcacaccgaaacgaaaagcagcttgtttcagtaacttgtgcagccttattgggagctagtatatgactttcttttagaccttttgaagtatttgacataa--tggcaactctattattccttttatggaattcttggcatctgggaactcttggtagggaatcactgTTTTAGAATGAAAACTCTCCCCCAGGAAGTGAATTAG-CTGTAAACAAATGAAA------CTTCATTTTTCTGTATGACTTGTAGAGCATAAATTATTTCTCTTTTCTGCATGAGTGGCTG
i saiBol1.JH378276          C 0 I 4
s cebCap1.NW_016107979v1       269129 536 -   1024465 ----AAAAAAAAAACA-GTAGCTGCTTTACGCTATAAGCCAAGGGAATTGAGCTAATTGTAATTCTTTTTCTGTTTTAT---AAATTTGTCCTACTCTTAAA-AATGAAGGGAAAAGAGCACTCTTTTTCAACCTCAAGGAATCATTTTTATTACTTCTGTTCTGTGAAGCCAAGTTCTGAGAGATTGTTACACAAACTTAAGTATAGTTTTTCCATCTTCAGTAAACTAACCTGATTGCCATCTAA---------TTAGTTGTTAACGATCAcaccgaaacgcaaagcagcttgtttcagtaacctgtgcagccttattgggagctagtatatagctttcttttagtccctttgaagtatttaacataa--tggcaactccgttattccttttatggaattcttggcatctgggaactcttggtagggaatcactgTTTTAGAATGAAAAATCTCCCCCAGGAAGGGAATTAG-CTGTAAACGAATGAAACTTCATCTTCATTTTTCTATATGACTTGTAGAGCATAAATTATTGCTC-TTTCTGCGTGAGTGGCTG
i cebCap1.NW_016107979v1    C 0 I 33
s otoGar3.GL873530            6740252 525 -  36342412 AAAAAACCCATCCAAACGTAGATGTCTTACTCTCTAAGCCAAGGGAATTGAGCT------AATTTCCGCTCTGTTTAATCACACATTTGCCCTGATCTTAAA-TATGAAGGGAAAAGAATGCTTTTTTAAAATCTGAAGGAGTTCTTTTTA----TTGTCTTCTGTGAAGTTATAATACTTCAA---GCTATAC-AACTTAAGTACGGTTTTATTATTTTTAGT-AAACAGTGAAATTGCCAGTGAGCGCTAacatccagttgtt-gtgatcacacctaaaagcaaaacaccttgttttaatgacctgtgcagccttattggaagctagtatatagctttcttttagtccttttgaagtattttacctaacttggcaactccattactccttttatggacttcttggcatatggggactcttggtagagaaTTGCAATGTTAGAGCAAAAAATCT-------AAAGTAAATTACCTGGTAAACAGACGAAA------CATCATTTTT-TATGTTATTTGTATAGCATAAATCATTCCT--TTTCTGCGTGAGTGCCTG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       278322 16181 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               3815971 2675 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65240657 2313 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               18835919   0 - 121039945 C

a score=9406.000000
s hg38.chr15_KI270850v1_alt     72016 26 +    430880 ctttctaggctgctttTAGCGAGATT
s gorGor5.CYUI01015946v1       374928 26 -    378907 ctttctaggctgCTTTTAGCGAGATT
i gorGor5.CYUI01015946v1    C 0 C 0
s saiBol1.JH378276             482771 26 -   3282555 CTTGCTAGGCTGTTATGAGTGAGACT
i saiBol1.JH378276          I 4 C 0
s otoGar3.GL873530            6740777 26 -  36342412 TTTGCTAGGCTACTTTTGGTGGAACT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       269665 33 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       278322 16181 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               3815971 2675 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65240657 2313 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               18835919  0 - 121039945 C

a score=-128.000000
s hg38.chr15_KI270850v1_alt     72042 1 +    430880 G
s gorGor5.CYUI01015946v1       374954 1 -    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s saiBol1.JH378276             482797 1 -   3282555 T
i saiBol1.JH378276          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       269665 33 -   1024465 I
e otoGar3.GL873530            6740803 0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       278322 16181 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               3815971 2675 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65240657 2313 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               18835919 0 - 121039945 C

a score=358576.000000
s hg38.chr15_KI270850v1_alt     72043 3972 +    430880 TtagaaacaaatgatcggtgctgtgaggaagaagcagcactcaggcaaaaaagttttctcagcaagacaatttgcttctgcaagtatgctgcttgcattagtcatgattgcaagagcacaccaaacggggtggagcaggggttcttatccctaatgcactccctacctctgtgtcattccaacatgggctggggtaggactgcacaatcttagctgactcagctggatattgtgaatattttctctaataagaaagggagggggaatgtgagttacaggttgggactggtaggaagagttgtttacaaggcaggttactaagcaggtaactaagctggtaagtagggtcgagaaggtacagggaaattgttcttaggaacaaagaacaaggaagttgaacaagttaaacctttgaagaggaacttactgtacctaacaATTCccccctcttaatttttgtaattcttcctcttcaaacttttttagcatgtctttgctttgctgttctgcttggttttctagaaggaaaagcttatctgaatagggtggaggagagctaagagaagttttggtaaattctgtgtctatgagtctttgcagtagtccacaaatgtatggtatgatacagcatccaacaagaataagcacacctataacgattgcaagagaagtaaatattgaggacattaagcctttccattttccagaccatttctccattaaacttgtaaagggatcatttattccagaattgcttgctaactcattggataaggaggttaggtcctgcaaagcttttgttactgttccgtcaggggctgtgttattaggaataaaagtacatcattggactccaatcaagacacagacaccacctttttctgctagcatcgtatctagggctatcctgttttcccagactatttagttaatgggacctaattgggaggctgttcccttaatggcatgtcttgtgtagttaacaaacctttgttggttgtaataaatgtagtttatccaatctacatttttatttacagttgaccaccaaaacagcacagattcaaatcctgaagctgtttgatttcgggccttaaatttatctggtacccctcgtggaactccagtagcatctttataaacgtgggagtcaaaggacccatgaaggtcacttcttctcttctgattttctcttctattatgttaatggaatgctagggtgaaagggatggccagttggactagagcacaagtaccactccagttacttggcagagtgtccagtaagggtccaccacaataccaccatacgtatgctcgaggatgaacaagggcagactgactggtaagctcttgggagagtttaagttcaccgcatccctttaggtcttcatgaaatgccaagttttccccttgttgtgagagacccgaggtaaaaattggtgtcaatagatggaggctggatggccctcagggactgacctgcagggtgttggactttagggaatagcagagagagagcttggcaagattcattaccccaggctgtggggtcttggagaagagctaccatacagctcatgcccagttggctggaagaccatccgagtggaaaggggacaacctgggcctctggcctactgtgcgcacaagtgtaacagttgcttttgtttagagtgcggacagaatatttaatccattctaaccaagcatttgcatcttggtaccctgtctcagttgctatggtttgtttcaaatttttaacttctacaatggcttaccttgattttatccttggttgaaggaagaacagcggtttcgttgagagagagtgtagaaggaggtggaggaggtgagaaagtaatgaaatgcatttcaaaggattctataagatgtgtccctgctattttggctcctatgccgtataagcgacttaaagtaggtttagggttggcagaagtggggataagaatagaaatttgcactggattacattggttatactggcagtcagggggtggggaatgtttcctttaacaaagcaaacatggttttagagacttacaactgcctgttgacaaagccctgatgttcagttgtccacataatatcattccagctgtggcaggcctgtttccctacatttcttaaggaacaagagtcgtaatgggggaggcttttgtctgaaagggacggagatacttctctgaggctgagagttgcttttgactttggagatctccacagg----atataacaaggcaagcatcaaaggtaatagtttggggtgagctcgacctagttacattaataacgagaggactagcaatagaaggggaaaagaaatatagcataagaggatcaaacccgttttagctttaacttggttggaattggccctgaaatagctgtccatgattctggagtgggtggtgctcttttgactcaggtatggtgagtccattctttttcagtggtgtggacggctgtctcagtcattagaaacactagataatgtccctcccaggtgggcttgagcttcctttctttctgacctttgatgagaatgtggtcactgtccgggctggtggtggtgaactggaaattcaaggggtggtgtatgtgccaagaggcctttagtcctaaggaaagagaaagtggaggatagaccaagtatatagttcttgagaaacagatcttttgtttcgaacgaggaatgtcagcagtggagtgtagataaggcaactcatacagcatttcataaggaggtgagccgacatctttcctaggggcagtttggaatcttcacaagaccatggggaggcatttagtccatggcaaccgagtctctaggactaatttggttaggtggtttttcagagtctgattcattctttctactcttcctgatgaaggtgggtgccaggggttatggtagtcccatgttatatctagtacttgggctagtttcttaagaacatgtgcagtgaaatgagtcctattgtctgaatcagcattttctattaatccaaacctgggtataatattttcaactaatgccttgagtacattactagcagttgcacttgaaaagggaatagcttctacccaatgagtaaggtgatctatcactaataaatattttaagtgaccaattgggggcatttcagcataatcaatttggacactttggaacagccttaatcctggatttctccctccaacaggtggttttctgaggatctgcttattagtcttcttacatactaggcaactatctgtaacttgtcttgccaaaatataaattcctatacatctgtagaccccgaggactgcatcacacttagcttgaggtccctaatgagtcccttgatgcagatgggagagaatttccctcatgaggggtttggataacatttctctttggtctggtgacacccatttcccttctgaattttctttggctcctatttttattaatttttccttttcagcgggagaaaagatggggactgcagtcgagggaggaaggcaagggactaagtgaaaaacaggcattttcagaggaaacggcagtgtgtttggctatttgatctgctaggttattccttccgctttgaaaagaaagacttttctgatgtcctggaacatggacaatagctattctggcagctgcaggttatctaatacttgggtgattaattctttgtggcccaggtcttggcctttgctattaataagatctcgttcagtccaaatttttccaaaggtgtgagctaccccaaaggcatacttggaatcagtataaatagtccgttcttggttttgcaagtgctttaaggcttgatttaatgcaaacaattcattcacatgtttgggcagaccaattatttggcaggcttcctgactctacttcttcaagtgcctccccatctactactgagtacctattacgcctttttccttcaattactt
s gorGor5.CYUI01015946v1       374955 3952 -    378907 Ttagaaacaaatgattggtgctgtgaggaagaagc-gcactcaggcaaaaaagttttctcagcaagacaatttgcttctgcaagtatgctgcttgcattagtcatgattgcaagagcacaccaaac-gggtggagcaggggttcttatccctaatgcactccctacctctgtgtcattccaacatgggct-gggtaggactgcacaatcttagctgactcagctggatattgtgaatattttctctaataagaaagggagggggaatgtgagttacagattgggactggtaggaggagttgtttacaaggcaggttactaagcaggtaactaagctggtaagtagggtcgagaaggtacagggaaattgttcttaggaacaaagaacaaggaagttgaacaagttaaacctttgaagaggaacttactgtacctaacaGTTCCcccctcttaatttttgtaattcttcctcttcaaacttttttagcatgtctttgctttgctgttctgcttggttttctagaaggaaaagcttatctgaatagggtggaggagagctaagagaggttttggtaagttctgtgtctatgagtctttgcagtagtccaccaatgtatggtatgatacagcatccaacaagaataagcacacctataacgattgcaagagaagtaaatattgaggacattaagcctttccattttccagaccatttctccattaaacttgtaaagggatcatttattccagaattgcttgctaactcattggataaggaggttaggtcctgcaaagcttttgttactgttccgtcaggggctgtgttattaggaataaaagtacatcattggactccaatcatgacacagacaccacctttttctgctagcatcgtatcta-ggctatcctgttttcccagactattta-ttaatgggacctaattggtcggctgttcccttaatggcatgtcttgtgtagttaacaaacctttgttggttgtaataaatgtagtttatccaatctacatttttatttacagttgaccaccaaaacagcacagattcaaatcctgaagctgtttgatttcgggccttaaatttatctggtacccctcgtggaactccagtagcatctatataaacgtgggagtcaaaggacccatgaaggtcacttcttctcttctgattttctcttct-ttatgttaatggaatgctagggtgaaagggatggccagttggactagagcacaagtaccactccagttacttggcagagtgtccagtaagggtccaccacaataccaccatacatatgctcgaggatgaacaagggcagactgactggtaagctcttgggagagtttaagttcaccgcatccctttaggtcttcatgaaatgccaagttttccccttgttgtgagagacccgaggtaaaaattggtgtcaatagatggaggctggatggccctcaggggctgacctgcagggtgttggactttagggaatagcagagagagagcttggcaagattcattaccccaggctgtggggtcttggagaagagctaccatacagctcatgcccagttggctggaagaccatccgagtggaaaggggacaacctgggcctctggcctactgtgcgcacaagtgtaacagttgcttttgtttagagtgcggacagaatatttaatccattctaaccaagcatttgcatcttggtaccctgtctcagttgctatggtttgtttcaaatttttaacttctacaatggcttaccttgattttatccttggttgaaggaagaacagcggtttcgttgagagagagtgtagaagga-gtggaggaggtgagaaagtaatgaaatgcatttcaaaggattctataagatgtgtccctgctattttggctcctatgccgtaaaagcgacttaaagtaggtttagggttggcagaagtggggataagaatagaaatttgcactggattacattggttatactggcagtc-gggggcgggggatgtttcctttaacaaagcaaacatggttttagagacttacaactgcctgttgacaaagccctgatgttca-ttgtccacataatatcattccagctgtggcaggcctgtttccctacatttcttaaggaacaagagtcgtaatgggggaggcttttgtctgaaagggacggagatacttctctgaggctgagagttgcttttgactttggagatctccacaggatatatataacaaggcaagcatcaaaggtaatagtttggggtgagctcgacctagttacattaataacgagaggactagcaatagaa-gggaaaagaaatctagcataagaggatcaaacccgttttagctttaacttggttggaattggccctgaaatagctgtccatgattctggagtgggtggtgctcttttgactcaggtatggtgagtccattctttttcagtggtgtggacggctgtctcagtcattagaaacactagataatgtccctcccaggt-ggcttgagcttcctttctttctgacctttgatgagaatgtggtcactgtccgggctggtggt-gtgaactggaaattcaaggggtggtgtatgtgccaagaggcctttagtcctaaggaaagagaaagtggaggatagaccaagtatatagttcttgagaaacagatcttttgtttcgaacgaggaatgtcagcagtggagtgtagataaggcaactcatagagcatttcataa-gaggtaagccgacatctttcctaggggcagttcggaatcttcacaaggccat-gggaggcatttagtccatggcaaccgagtctctaggactaatttggttaggtgg-ttttcagagtctgattcattc-ttctactcttcctgatgaaggtgggtgcca-gggttatggtagtcccatgttatatctagtacttgggctagtttcttaagaacatgtgcagtgaaatgagtcctattgtctgaatcagcattttctattaatccaaacctgggtagaatattttcaactaatgccttgagtacattactagcagttgcacttgaaaagggaatagcttctacccaatgagtaaggtgatctatcactaataaatattttaagtgaccaatt-ggggcattt-ggtgtaatcaatttggacactttggaacagccttaatcctggatttctccctccaacaggtggttttctgaggatctgcttattagtcttcttacatactaggcaactatctgtaacttgtcttgccaaaatataaattcctatacatctgtagaccccgaggactgcatcacacttagcttgaggtccctaatgagtcccttgatgcagatgagagagaatttccctcatgaggggtttggataacatttctctttggtctggtgacacccatttcccttctgaattttctttggctcctatttttattaatttttccttttcagcgggagaaaagat-gggactgcagtcga-ggaggaaggcaaggggctaagtgaaaaacaggcattttcagaggaaacggcagtgtgtttggctatttgatctgctaggttattccttccgctttgaaaagaaagacctttctgatgt-ctggaacatggacaatagctattctggcagctgcaggttatctaatactt-ggtgattaattctttgtggcccaggtctttgcctttgctattaataagatctcgttcagtccaaatttttccaaaggtgtgagctaccccaaaggcgtacttggaatcagtataaatagtccgttcttggttttgcaagtgctttaaggcttgatttaatgcaaacaattcattcaca-gtttgggcagaccaattattcggcagtcttcctgactctacttcttcaagtgcctccccatctactactgagtacctattacgcctttttccttcaattacTT
i gorGor5.CYUI01015946v1    C 0 N 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       269665   33 -   1024465 I
e otoGar3.GL873530            6740803    0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       278322 16181 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               3815971 2675 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65240657 2313 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               18835919    0 - 121039945 C
e saiBol1.JH378276             482798    0 -   3282555 C

a score=326794.000000
s hg38.chr15_KI270850v1_alt     76015 3535 +    430880 gggaagagccatctataaagaagccctgccccgttttgtaaggggtctctcttaaatcaggcctaacttttgtatgatcattaaatctaaacactcatgctcaggtctctttagatttggatctccagtcaggaaacctctgggttaagtgaattatcagtggttagtgttaaatcatctctttctaacaggatagcttcatactttaaaattctcaagtcagtaagccaccttcctgccttttaatttaagatggctctaacctgatggggcatgtttacaactaactttcccccaaaggttagttttctgctttctttagttaacaaggcggtagctgcaatggattgaaacattcaggccatccacaggttactggatctaaaacttttgataggagatccatgggttgctggtgacctccgtgttcttgggtaaggacccctaaagctacccccttatttatgttaacagaaaggtgaaatggcttttctagggaaggcaaagctaaaacagaggcagttataagcagatgttttagctcctcaacctggtggagttcttcagaagtccagaggagagggtcaggcttttcttgggtgatttttaggtagagaggctttatgacaagggcatatgagtcaatccataagcggcaatatccggctatccctaggaattttctgagttcttgtttagtcttaagcaaaggtatggatacaatcctttcaaccctctcaggccctatccttcgtttgccgttacttattaagtgtcctaggtatttaacttcaggctctatgaatcgaagctttctctttgaaacccatagcccctctccttacaaatggttaaggatatggacggagaaagcagataccttttctatagcctaaccggatattaataagtcatctacgtactggagcagacatatacattttggggtataaacttgttctaacacttgttctagaatttgaccaaagagattaggggaatctgtgaagccctggggtagaactgtctatcgatactgttgctgtcatccagaatggggatcttcccattcgaaagcaaaaatgtctcagctgtcctcatccaaggagcatgctcaaaaggcatcttttaaacctattactgtaaaccattgatgttcatatggaattttactgagaatggtttaaggattagggacaacaggatgggtagtctagactgtctggttgatggcccagaggtcttatgctagtcgacatgacctatctggtttcttcacaggcagtattggggtgttataaggggacatacagggttcaaggagcccatccttgatgaggctttcaattacaggtttcaggcctattctgccttctaaaggaatagaatattgctttcttcttactatttctccaggggtttttaactttatatgtatagggggaatttggagttttccccaatttccttcccttgcccaaacatcaggatgaatgtatgtttcttctgcagtggtgagcaggtttaatgaagtgtagaatccttctgagccaatacgtaaacctatacctaattttaacattaagtttcttcctaatagattagttcctgcctctgaaattaacaaaaattcaacattagctgagcagtttttacatctaatttctgtttcttttaaaatttttagtttgattccctctccttttacccctgagactacaagctcctctgaggaccaggttatattgtgggggaaggtaacaaacagaggagcaggctgctcctgagtctactaaaaaggtcataagctcggatttgggttccacttctaaatttatcaagggctcttggtgggattcaaggtaaaagagacagagcccctaacccccctattcctcctcaaaggtcgtaagtgggacgacttctctttctgattttaatttgggacaatacctcttgaagtggcctactttctcacaattgaagcattgattctgtctcttctctctatttttgggtttctcggctttgtctccttatgttctttatatggcttaggaagtgggggcctaggatctttataggttttggctctcgggaggctttgtttgggagtgtgtgggtctctgggtaacagagagtaatactggtgtgttttatcctttggggccccctgttggaaggtggataacataattttcattttttctttttgcttctcctcatccctccttacacacactttctgagcttctctaagaagctcgttcgtgggatggtccttccaatttcctatcttttgtaatttccttgtgatatctggctgttagtaacaaaatgaagctttaacattcactgcctaagaggatcttctaaatctaggccagcatattttctcatttgttctttcaacctgtctaaaagttcgataggcccttcatctttcctttgttgtatgtcgaatgctcgagtaagattttgggttcggagtactgactcccgaatcccttttattatcatttccctaagttcttgcgtatcctcttcagtgggctgcgttattattgtcccagcaggggtcttggttggggaatttttgatccgctgcatgaatgttttggccaggagggtgttcatgttcccagggtaccatagcagctctacagatgatgcttctttcttcccctgagaaaaggatgcctaggatggacattaactcagcccaagtatatataactgtggtcctagaaattggttaattcgatctgctattccactggagttgtctaatagtgtggcttgaactctgtttttaggttttggacctccgagctggttaaaggagcatttacaaagtgaatacctcctcctcgtagggacacctctcttcaggggaagagaggtggagctaattctcccgaggtagaggggaaggggaagttctgaatatcccttttacattgctctatctcacactgaagtcctttcagggaagagtacttagggtgatagtgagcaggctgttgggacaattcccaagaggcagggttataaagagggggaacaatgtgggtaggagaagggtctgggacaactgcctctgcttgagggggaaggaggttagggatattggacgggggaaggtggtggaggaagttccatgtgttggtgagctgtctaggaacagggaccttatctttctcagaggagttaatttctgacttgcttttcaggattgattcctgagtccaaatgaaacaacaatattttatcatttgctgctttttcttgtatttagtcctttcactctcttttcaatattttagcataagccctaggggactatcaggaggaatgttattgttgctagctttatcctttttctcccctgcattacttgaggtatttcccatcttgaaaagggattggggtgaggctcaatttcccctactagaaatttcttcccagttacgagaggtttgtataaggctcaacctctcctactggagatttctcacctttcctttccttccct
s gorGor5.CYUI01002882v1         6380 3534 +     24495 gggaagagccatctataaataagtcctgccccgttttgtaaggggtctctcttaaatcaggcctaacttttgtatgatcattaaatctaaacactcatgctcaggtctctttagatttggatctccagtcaggaaacctctgggttaagtgaattatcagtggttagtgttaaatcatctctttctaacaggatagcttcatactttaaaattctcaagtcagtaagccaccttcctgccttttaatttaagatggctctaacctgatggggcatgcttacaactaac-ttcccccaaaggttagttttctgctttctttagttaacaaggcggtagctgcaatggattgaaacattcaggccatccacaggttactggatctaaaacttttgataggagatccatgggttgctggtgacctccgtgttcttgggtaaggacccctaaagctacccccttatttatgttaacagaaaggtgaaatggcttttctagggaaggcaaagctaaaacagaggcagttataagcagatgttttagctcctcaacctggtggagttcttcagaagtccagaggagagggtcaggcttttcttgggtgatttttaggtagagaggctttatgacaagggcatatgagtcaatccataagcggcaatatccggctatccctaggaattttctgagttcttgtttagtcttaggcaaaggtatggatacaatcccttcaaccctctcaggccctatccttcgtttgccgttacttattaagtgtcctaggtatttaacttcaggctctatgaattgaagctttctctttgaaacccatagcccctctccttacaaatggttaaggatatggatggagaaagcagataccttttctatagcctaaccggatattaataagtcatctacgtactggagcagacatatacattttggggtataaacttgttctaacacttgttctagaatttgaccaaagagattatgggaatctgtgaagccttggggtagaactgtctatcgatactgttgctgtcatccagaatggggatcttcccattcgaaagcaaaaatgtctcaactgtcctcatccaaggagcatgctcaaaaggcatcttttaaacctattactgtaaaccattgatgttcatatggaattttactgagaatggtttaaggattagggacaacgggatgggtagtctagactgtctggttgatggcccagaggtcttatgctagtcgacatgacctatctggtttcttcacaggcagtattggggtgttataaggggacatagagggttcaaggagcccatccttgatgaggctttcaattacaggtttcaggcctattctgccttctaaaggaataggatattgctttcttcttactatttctccaggggtttttaactttatatgtatagggggaattttgagttttccccaatttccttcccttgctcaaacatcaggatgaatgtatgtttcttctgcagtggtgagcaggtttaatgaagtgtagaatccttctgagccaatacgtaaacctatacctaattttaacattaagtttcttcctaatagattagttcctgcctctgaaattaacaaaaattcaacattagctgagcagtttttacatctaatttctgtttcttctaaaatttttagtttgattccctctccttttacccctgagactacaagctcctctgaggaccaggttatattgtgggggaaggtaacaaacagaggagcaggctgctcctgagactactaaaaaggtcataagctcagatttgggttccacttctaaatttatcaagggctcttggtgggattcaaggtaaaagagacagagcccctaacccccctattcctcctcaaaggtcgtaagtgggacgacttctctttctgattttaattcaggacaatacctcttgaagtggcctactttctcacaattggagcattgattctgtgtcttctctctatttttgagtttctcggctttgcctccttatgttctttatatggcttaggaagtgggggcctaggatctttataggttttggctctcgtgaggcttcgtttgggagtgtgtgggtctctgggtaacagagagtaatactggtgtgttttatcctttggggccccctgttggaaggtggataacataattttcattttttctttttgcttgtcctcatccctccttacacacactttctgagcttctctaagaagctcgttcatgagatggtccttccaatttcctatcttttgtaatttccttgtgatatctggctgttagtaacaaaatgaagctttaacattcactgcctaagaggatcttctaaatctaggccagcatatgttctcatttgttctttcaacctgtctaaaagttcgataggcccttcatctttcctttgttgtatgtcgaatgctcgagtaagattttgggttcggagtactgactcccgaatcccttttattatcatttgcctaagttcttgcatatcctcttcagtgggctgtgttattattgtcccaccagaggtcttggttggggaatttttgatctgctgcatgaatgttttggccaggagagtgttcatgttcccaggctaccatagcagctctacagatcatgcttctttcttcccctgagaaaaggatgcctaggatggacattaactcagccgaagtatatctaactgtggtcctagaaattggttaattcgatctgctattccactggagttgtctaatagtgtggcttgaactctgtttttaggttttggacctccgagctggttaaaggagcatttacaaagtgaatacctcctcctcgtagggacacctctcttcaggggaagagaggtggagctaattctcccgaggtagaggggaaggggaagttctgaatatcccttttacattgctctatctcacattgaagtcctttcagggaagagtacttagggtggtagtgagcaggctgttgggacaattcccaagaggcagggttataaagagggggaacaatgtgggtaggagaagggtctgggacaactgcctctgcttgagggggagggaggttaggggtattggatgggggaaggtggtggaggaggttccatgtgttggtgagctgtctaggaacagggaccttatctttctcagaggagttaatttctgacttgcttttcaggattgattcctgagtccaaatgaaacaacaatattttatcatttgctgctttttcttgtatttagtcctttcattctctttccagtattttagcataagccctaggggactatcaggaggaatgttattgttgctagctttatcctttttctcccctgcattacttgaggtatttcccatcttgaaaagggattggggtgaggctcaatttcccctactagaaatttcttcccagttacgagaggtttgtataaggctcaacctctcctactggagatttctcacctttcctttcctttcct
i gorGor5.CYUI01002882v1    N 0 N 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       269665   33 -   1024465 I
e otoGar3.GL873530            6740803    0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       278322 16181 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               3815971 2675 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65240657 2313 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               18835919    0 - 121039945 C
e saiBol1.JH378276             482798    0 -   3282555 C

a score=0.000000
s hg38.chr15_KI270850v1_alt     79550 153 +    430880 tcccttcccttcccttcccttcccttccctttcccttctctttcccttccctttcccttccctttccctttcctttcctttccctttcctttcctttccctttcctttcctttccctttcctttcctttccctttccctttccctttcctttc
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       269665  33 -   1024465 I
e otoGar3.GL873530            6740803   0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       278322 16181 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               3815971 2675 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65240657 2313 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               18835919   0 - 121039945 C
e saiBol1.JH378276             482798   0 -   3282555 C

a score=79551.000000
s hg38.chr15_KI270850v1_alt     79703 885 +    430880 cctttcctttcc--gaggctcaacccccctgctggaggtttcttgcacttttctcctttcgcttcatccttctctggctgcttccctcatgggaacgttggtttcctcttagcaatggctgtttcagtagaaacccctgacccagactcctttacagaagggctaccttaagctgtataaggtgaccacagaactgcagatctggactgaacacttgctttgcactcaattgtgagtctcaacacacactttcaatctccaagatatcccaaccaccaagaaaatagtttgtcgctcttgtgatgtttcttacgttggtctgtgcacatagttacctggtcaccatggtatgtgaggatccttttctcttaagttgttggtctgttcctttccagactgctgagagtccgggtttattcatcacactgggtgggtcctgatccctcaccatgaggccacctcagtgaggcagtgggatgcttctcctcactattggtgactggagacccttttctcagaggagaatgGGAATTCCAGACGAGCCCCCAGATTGTTAGAAACAAATGATCAggctgggcacagtggctcgcccctgtaatcccagcactttgggaggccgaggtgggcggatcatgaagtcaggagatcgagaccatcctggctaacatggtgaaatgccgtctctactaaaaaaaaaaaaaaaacacaaaaaaattagctgggcgcaatggtgggtgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacctgggaggtggagcttgcagtgagctgagatcaagccactgtgctccaccctgggcaacagagcgaaactctgtctcaaaaaaaaaaaaaagaaagaaaaa
s gorGor5.CYUI01015946v1         2931 880 -    378907 cctttcctttcctagaggctcaacccccctgctggaggtttcttgcacttttctcctttcgcttcgtccttctctggctacttccctcacgggaacgttggtttcctcttagcaatggctgtttcagtagaaacccctgacccagactcctttacagaagggctgccttaagctgtataaggtgaccacagaactgcagatctggactgaacacttgctttgcactcaattgtgagtctcaacacacactttcaatctccaagatatcccaaccaccaagaaaatactttgtcgctcttgtgatgtttcttatgttggtctgtgcacatagttacctggtcaccatggtatgtgaggatccttttctcttaagttgttggtctgttcctttccagactgctgagagtccgggtttattcatcacactgggtgggtcctgatccctcaccatgaggccacctcaatgaggcagtgggatgcttctcctcactattggtgactggagacccttttctcagaggagaatggggattccggacgagcccccatatTGTTAGAAACAAATGATCAggctgggcgcagtggctcgcccctgtaatcccagcactttgggaggccgaggcgggcggatcacgaagtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaaaaaaaaaa---tacaaaaaaattagctgggcgcagtggtgggtgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagctgagatcaagccactgtgctccaccctgggcgacagagcaaaactctgtctcaaaaaaaaaa----gaaagaaaaa
i gorGor5.CYUI01015946v1    N 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       269665  33 -   1024465 I
e otoGar3.GL873530            6740803   0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       278322 16181 +   4111199 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               3815971 2675 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65240657 2313 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               18835919   0 - 121039945 C
e saiBol1.JH378276             482798   0 -   3282555 C

a score=209224.000000
s hg38.chr15_KI270850v1_alt     80588 440 +    430880 agaaaCaaatgatcagtgctgcaaggaagaaccagcactcaggaaaaaa-agttttctcagcaagacaacttacttctgcaaaagactgctgtttgcattagtcacgaatgcaagagcacaccgagcagg------atagagcaggag-tttatatccctaacgcagtccctacctctctgtcatttccacatgggctggagtcggactacacaatctaagcagacttgatttgctatcgcgaatattctccctaataaggaagggagagggaatgtgagttacaggttgggactgacgggaagagttgtttacaaggcaggtaactgagcagataactaagcaggtaaataggggtgagaaggtacagggaaattgttcttaggaacaaagaacgaggaagttgaacaggttaaacctttgaagaggaacttactgtacctaataA-G
s gorGor5.CYUI01015946v1         3811 440 -    378907 agaaacaaatgatcagtgctgcaaggaagaaccagcactcaggaaaaaa-agttttctcagcaagacaacttacttctgcaaaagagtgctgtttgcattagtcacgaatgcaagagcacaccgagcggg------atagagcaggag-tttatatccctaacgcagtccctaactctctgtcattcccacatgggctggagtcggactacacaatctaagcagacctgatttgctatcgcgaatattctccctaataaggaagggagagggaatgtgagttacaggttgggactgatgggaagagttgtttacaaggcaggtaactgagcagataactaagcaggtaaataggggtgagaaggtacagggaaattgttcttaggaacaaagaacaaggaagttgaacaggttaaacctttgaagaggaacttactgtacctaataA-G
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106504935 442 - 171882078 agaaacaaatgatcagtgccacaaggaagaaccagcactcaggcaaaaacggttttctcagcaagaca----acttctgcaaaagagtgctgcttgggttggtcacaattgcaagagcacaccgagtgggttctctctagagcaggggttttttatccctaacgcagtccctacttctgtgtcattcccccatgggctggggtcggacctcacgatctaatcggacctgatttgctatcgcgagtattttccctaataaggaagggagagggaatgtgagttacaggttgatactgatgggaagagttgtttaccaggcaggtaactgagcagataactaatcaggtaagtagggccgagaaggtacagggaaattgttcttaggaacaaagaacaaggaagttgaacaagttaaacttttgaa---gaacttactgtacctaataAGG
i macFas5.chr7              I 30845 C 0
s colAng1.NW_012116021v1       294503 440 +   4111199 agaaagaaatgatcagtgccgcaaggaagaaccagcactcaggcaaaaattattttcttagcaagaca----acttctgcaaaaaagtgctccttgggttagtcacaattgcaagagcacaccgagtgggttctctctagagcaggag-tttttatccctaatgtagtccctacttctgtgtcattcccccatgggctgggatcggaccacacgatctaattggacctgatttgctatcgcgagtattttccctaataaggaagggagagggaatgtgagttacaggttgagactgacgggaagagttgtttacaaggcaggtaactgagcagataactaagcaggtaagtaggggcgagaaggtacagggaaattgttcttaggaacaaagaacaaggaagttgaacaagttaaacttttgaa---gaacttactgtacctaataA-G
i colAng1.NW_012116021v1    I 16181 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       269665  33 -   1024465 I
e otoGar3.GL873530            6740803   0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               3815971 2675 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               18835919   0 - 121039945 C
e saiBol1.JH378276             482798   0 -   3282555 C

a score=391945.000000
s hg38.chr15_KI270850v1_alt     81028 281 +    430880 TTTTTTT--GATTGGCTAATTAAATGTCTATTCATTATTGCCAAAAAGTGCCTA-CCTCAACAACAAGATACCAAATTTTAGAAAATGTTGGAGCTCTCTCTGAATCTAGGAGGAAGTGAGTAGTTTAGCTTTTATTTAGTAGTTAGGACCTTAAGTAAATCAC-TTTTTTTACTGTGTTTCTGTATAACATAGATAATATTTTTTGCCCTGCAAGAGAGCATATAGAGGAAAGCTCTTTGGCAGCGATACTGTGCCCTATGAATAAAAAAGTGATGGTGTCATT
s gorGor5.CYUI01015946v1         4251 282 -    378907 TTTTTTT-TGATTGGCTAATTAAATGTCTATTCATTATTGCCAAAAAGTGCCTA-CCCCAACAACAAGATACCAAATTTTAGAAAATGTTGGAGCTCTCTCTGAATCTAGGAGGAAGTGAGTAGTTTAGCTTTTATTTAGTAGTTAGGACCTTAAGTAAATCAC-TTTTTTTACTGTGTTTCTGTATAACATAGATAATATTTTTTGCCCTGCAAGAGAGCATATAGAGGAAAGCTCTTTGGCAGCGATACTGTGCCCTATGAATAAAAAAGTGATGGTGTCATT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106505377 280 - 171882078 TTTTTTTTTGGTTGACTAATTAAATGTCTATTCATTTTTGCCAAAAAGTGCCTA-CCCCAATGACAAGATACTAAAATTTAGAAAATGTTGGAGCCCTCTCTGAATCTAGGAGGAAGTGAATAGTTTAGCTTTTATTTAGTAGTTAGGACCTTAAGTAAATCAC-TTTTTTTACTGTGTTTCTGTATAAAATAG---ATATTTTTTGCCCTGCAAGAGAACATATAGAGGAAAGCTCTTTGGCAACGATACTGTGCCCTATGAATAAAAAAGTGATGATGTCATT
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       294943 284 +   4111199 TTTTTTTTTGATTTACTAATTAAATGTCTATTCATTTTTGCCAAAAAGTGCCTA-CCCCAACGACAAGATACTAAATTTTAGAAAATGTTGGAGCTCTCTCTGAATCTAGGAGGAAGTGAATAGTTTAGCTTTTATTTAGTAGTTAGGACCTTAAGTAAATCACTTTTTTTTACTGTGTTTCTGTATAAAATAGATAATATTTTTTGCCCTACAAGAGAACATACAGAGGAAAGCTCTTTGGCAACGATACTGTGCCCTATGAATAAAAAAGTGATGATGTCATT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             482798 270 -   3282555 --TTTTTTGGATTGGCTAATTAAATTTCTG-------TTGCCAAAAAGCGCCTACCCCCAAAAGCAAGATACTAAATTTTA-AAAATGTTGGAG----CTCTGAATCTAGGAGGAAGTGAGAAATTTAGCTTTTATTTAGTAATTAGGACCTTAAGTAAATTGC-TTCTTTTACTGTGGTTCTGTGTACAATAGATAGTATTTTTTGCCCTGCAAGAGAGCATGAAGAGGAAAGCTCTTTGGAAATGATACTGTGTCCTACAGATATTAAAGTGATGGTGTCATT
i saiBol1.JH378276          C 0 I 1046
s cebCap1.NW_016107979v1       269698 270 -   1024465 --TTTTTTTGATTGGCTAATTAAATTTCTG-------TTGCCAAAAAGTGCCTACCCCCAACAGCAAGATACTAAATTTTA-AAAATGTTGGAG----CTCTGAATCTAGGAGGAAGTGAGAAATTTAGCTTTTATTTAGTAATTAGGACCTTAAGTAAATTGC-TTCTTTTACTGTGTTTCTGTATACAATAGATAATATTTTTTGCCCTGCAAGAGAGGATAAAGAGGAAAGCTCCTTGGAAATGATACTGTGTCCCACAGATATTAAAGTGATGGTGTCATT
i cebCap1.NW_016107979v1    I 33 I 297
s otoGar3.GL873530            6740803 269 -  36342412 --TTTTTTTGGTGAGCTAATTAAATTCCTGTTCGTCATTGCCAGAAAGTTCCTTTTCCCAGCAGCAAGATACTAAATTTA--AAGATGTTGGAA----CTCTGAATCTAGGAGAAAGAGAGAGGTTTAGCTTTTACTTA-CAGTTAGGACTTGAAGCAAACCAC-TTCTATTA---TGTTTCTGTATAAAATAGGTGATACTTTTTGCCCTGCAAGAGACCATAT--AGGAAAACTCTTTGGCACC-ATTCTGCTGTGTACAAATAGAATAGTGGTGGGGTCATT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               3815971 2675 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               18835919   0 - 121039945 C

a score=910.000000
s hg38.chr15_KI270850v1_alt     81309 1 +    430880 T
s gorGor5.CYUI01015946v1         4533 1 -    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106505657 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       295227 1 +   4111199 T
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530            6741072 1 -  36342412 T
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       269968 297 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               3815971 2675 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               18835919 0 - 121039945 C
e saiBol1.JH378276             483068 1046 -   3282555 I

a score=18790.000000
s hg38.chr15_KI270850v1_alt     81310 16 +    430880 GTGGCTGAATAACAGT
s gorGor5.CYUI01015946v1         4534 16 -    378907 GTGGCTGAATAACAGT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106505658 16 - 171882078 GTGGCTGAATAACACT
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       295228 16 +   4111199 GTGGCTGAATAACACT
i colAng1.NW_012116021v1    C 0 C 0
s cebCap1.NW_016107979v1       270265 16 -   1024465 GTGGCTCAATAACACT
i cebCap1.NW_016107979v1    I 297 C 0
s otoGar3.GL873530            6741073 16 -  36342412 GTGGCTGAATAACACA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               3815971 2675 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               18835919  0 - 121039945 C
e saiBol1.JH378276             483068 1046 -   3282555 I

a score=363639.000000
s hg38.chr15_KI270850v1_alt     81326 250 +    430880 TTATTTTGAGAATGCTTTATAACAGCTTTTCATGGGAAATAAAGCAATGCTGTTAACTTCATCTTGCATTTTTCTCATTTTTACTATGATTAAAAAGTAGTC----------------AGCTTGTACAAAGGAAAGA--AACAAGCCTTGACTCAGGAGCCTAGGACTTTTTCTTTGGTTTGCCCTCCTGGAACAGATTACCTTTCCAAATTGAATTTGTGGAGGAGCATTGGGAAATATCAGAAATGTCATATTAAGCACCTCAGTG
s gorGor5.CYUI01015946v1         4550 250 -    378907 TTATTTTGAGAATGCTTTATAACAGCTTTTCATGGGAAATAAAGCAATGCTGTTAACTTCATCTTGCATTTTTCTCATTTTTACTATGATTAAAAAGTAGTC----------------AGCTTGTACAAAGGAAAGA--AACAAACCTTGACTCAGGAGCCTAGGACTTTTTCTTTGGTTTGCCCTCCTGGAACAGATTACCTTTCCAAATTGAATTTGTGGAGGAGCATTGGGAAATATCAGAAATGTCATATTAAGCACCTCAGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106505674 255 - 171882078 TTATTTTGAGAATGCTTTATAACAGCTTTTCATGGGAAATAAATCTATGCTGTTAACTTCATCTTGCATTTTTGTCATTTTTACTGTGATTAAAAAGTAGTC----------CAGTCAAACCTGTAGAAAGGAATG---AACAAACCTTGACTCAGGAGCCTAGGACTTTTTCTTTGGTTTGCCCTCCTGGGACGGATTACCTTTCCAAATTTAATTTGTGGAGGAGCATTGGGAAATATCAGAACTGTCATATGAAGCACCTAAGTG
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       295244 252 +   4111199 TTGTTTTGAGAATGCTTTATAACAGCTTTTCATGGGAAATAAATCTATACTGTTAACTTCATCTTGCATTTTTCTCATTTTTGCTATGATTAAAAAGTAGTC----------CAGTCAAACTTGTACAAAGGA------AATAAACCTTGATTCAGGAGCCTAGGACTTTTTCTTTGGTTTACCCTCCTGGGACAGATTACCTTTCCAAATTTAATTTGTGGAGGAGCATTGGGAAATACCAGAACTGTCATATTAAGCACCTAAGTG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             484114 254 -   3282555 TCATTTTGAAAATGCTT--TAACAGCTTTTCATGGGAAACAAAGCAATGCTGTTAACTTCATCTTGCATTTTTCTAGTCTTTACTGTGATTAAAAAGTAGTC----------CAGTCAAAGTCGTACAATGGAAATA--AACAAACCTGGACTAAGGAGCCTAAGACTTTCTCTTTGGTTTGCCCTCCTGGGACAGATTACCTTTCCAAACTGAATTCGTGGAGAACCATTTGGAAATATCAGAACTGTCATGTTAAGCACCTAAGTG
i saiBol1.JH378276          I 1046 C 0
s cebCap1.NW_016107979v1       270281 254 -   1024465 TCATTTTGAAAATGATT--TAACAGCTTTTCATGGGAAACAAGGCAATGCTGTTAACTTCATCTTGCATTTTTCTAGTCTTTACTGTGATTAAAAAGTAGTC----------CAGTCAAAGTTGTACAATGGAAATA--AACAAACCTGGACTAAAGAGCCTAAGACTTTCTCTTTGGTTTGCCCTCCTGGGACAGATTACCTTTCCAAATTGAATTCGTGGAGAACCATTTGGAAATATCAGAACTGTCATGTTAAGCACCTAAGTG
i cebCap1.NW_016107979v1    C 0 I 22
s otoGar3.GL873530            6741089 249 -  36342412 TTATTTTGAAAATGCTT-----------TTCATGGGAAATGAGGCAGTGCTCTTAACTT-------CATTTTTATAGTCTTTACCTTGA-TAAAAAGTAGTCCAGACAAATCCAGACAAAGTTGTACAAGGAAATAATGAACAAATCTTGACTGAGGAACTGAAGGCCTTCTCTTTGGTTTGCCCTCATGGGACAGATTATTTTCCCAAACTGAACATATGGAGAAACATTTGGAAATATCACAACTGTCATGGTGAACACCTAAGTA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               3815971 2675 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               18835919   0 - 121039945 C

a score=9153.000000
s hg38.chr15_KI270850v1_alt     81576 8 +    430880 GTACTTTT
s gorGor5.CYUI01015946v1         4800 8 -    378907 GTACTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106505929 8 - 171882078 GTACTTTT
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       295496 8 +   4111199 GTACTTTT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             484368 8 -   3282555 GTACATTC
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6741338 8 -  36342412 GTACTTTC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       270535 22 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               3815971 2675 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               18835919 0 - 121039945 C

a score=315594.000000
s hg38.chr15_KI270850v1_alt     81584 657 +    430880 AATAGaggagttattcagaaattatactaggcagatagagagggtaaggaggcctcagtaaggctttcccttttaatagaaacaactccagaaacatttctttttcttttctttttatcttttttttggagacggaatctcgctctgtcacccaggctggagtgcagtggtgtgatctcagctcactgcagcctctgcctcccaggttcaagtgaatctcctgcctcagcctcctgagtagctgggactacaggcTGCcaagctttgatatgcaaatgccagcgcttagaaactgtgtccattcaacatggagattcccaccctcttcttctagtcaccacctcaaggtgacacctccagatgaccccatgtgtgcaggacaacatggtgacctacatttgcatattaaaaggctagggtgggagggccacgtttttctcgggctacatgaatgacctgcctggtcaaaccaatgccctgggccctgtgcaaatcagacaccacctcctccagcctcccaatataaccgagtactgttctgccacacacggggctttttctctgttcagacccccc-tttttctgtacc--gcagggagcctttcttctttcttgcctattaaactttctgttccttaaaaccactcctgtgtgtccatg
s gorGor5.CYUI01015946v1         4808 658 -    378907 AATAGaggagttattcagaaattatactaggcagatagagagggtaaggaggcctcagtaaggctttcccttttagtagaaacaactccagaaacatttctttttcttttctttttatcttttttttggagacggagtctcgctctgtcacccaggctggagtgcagtggtgtgatctcagctcactgcagcctctgcctcccaggttcaagtgaatctcctgcctcagcctcctgagtagctgggactacaggcTGCcaagctttgatatgcaaatgccagcgcttagaaactgtgtccattcaacatggagattcccaccctcttcttctagtcaccacctcaaggtgacacctccagatgaccccacgtgtgcaggacaacatggtgacctacatttgcatattaaaaggctagggtgggagggccacgttttcctcgggctacatgaatgacctgcctggtcaaaccaatgccctgggccctgtgcaaatcagacaccacctcctccagcctcccaatataaccgagtactgttctgccacacacggggctttttctctgttcagaccccccctttttctgtacc--acagggagcctttcttctttcttgcctattaaactttctgctccttaaaacctctcctgtgtgtccatg
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106505937 648 - 171882078 AGTAGaggagttactcagaaattatattaggcagatagagagggaaaggagtcctcagtaaggctttcccttttaatagaaacaactcctgaaacatttc-ttttcttttct-------ttttttttggagacggagtctcactctgtagaccaggctttagtgcagtgatgtgatctcggctcactgcaacctcctcctcccagttatagttgcatctcctgcctcagcctcctgagtagctgggactgcaggcTGCcgagctttaatatgcaaatgtcagcacttggaaactgagtccattcaacatgaaaattcccgccctcttcttctagtcaccgcctcaaggtgacacctccagaagaccc--tgtgtgcaggacaatatggtgacctacatttgcaaattaaaaggctagagtgggagggccacgtttttcttgggctacatgaatgacatgcctggtcaaaccgattccctgggcccaatgcaaatcagacaccacctcctccagcctcccaatataaccaagtacttttctgctgcacatggggctttttctctgttcggagccctgctttctctgtaca--ggggggagcctttcttctttcttgcctattaaactttctgctccttaaaaccactcctctgcatccatg
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       295504 646 +   4111199 AATAGaggagttattcagaaattatattaggcagatagagacggtaaggagtcctcagtaaggctttcccttttaatagaaacaactcctgaaacatttc-tcttcttttc--------ttttttttggagacggagtctcactctgtcgaccaggctttagtgcagtgatgtgatctcagctcactgcaacctcttcctcccaggtacagttgcatctcctgcctcagcctcctgagtagctgggattccaggcTGCcaagctttaatatgcaaatggcagcacttggaaactgagtccattcaacatgaaaattcccgccc---tcttctagtcaccacctcaaggtgacacctccagaagaccc--tgtgtgcaggacaatatagtgacctacatttgcaaattaaaatgctagggtgggagggccacgtttttcttgggctacatgaatgacatgcctggtcaaaccgattccctgggccctgtgcaaatcagacaccacctccttcagcctcccaatataaccaagtacttttctgctgcacacagggctttttctctgttcggagccctgctttctctgtacaggggggggggcctttcttctttcttgcctattaaactttctgctccttaaaaccactcctctgcatccatg
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       270535  22 -   1024465 I
e otoGar3.GL873530            6741346   0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               3815971 2675 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               18835919   0 - 121039945 C
e saiBol1.JH378276             484376   0 -   3282555 C

a score=48721.000000
s hg38.chr15_KI270850v1_alt     82241 65 +    430880 tcgtttaactggcgtgagacaaaggaccccgatgtttctcccgttttcagagccatatcaCTTTG
s gorGor5.CYUI01015946v1         5466 65 -    378907 tcgtttaactggcatgagacaaaggaccccgatgtttctcccgttttcagagccatatcaCTTTG
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106506585 65 - 171882078 ttgtttaactgatgtgagcccaaggaccctgatgtttctccagtcatcagagccatatcaATTTC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20332572 65 -  24206276 tcgtttaactggtgtgagccgaaggaccccgatgtttctccagtcatcagagccatatcaATTTC
i chlSab2.chr29             I 18239 C 0
s colAng1.NW_012116021v1       296150 65 +   4111199 ttgtttaactggtgtgagctgaaggatcccgatgtttctctagtcatcagagccatatcaCTTTC
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       270535 22 -   1024465 I
e otoGar3.GL873530            6741346  0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               18835919  0 - 121039945 C
e saiBol1.JH378276             484376  0 -   3282555 C

a score=17467.000000
s hg38.chr15_KI270850v1_alt     82306 11 +    430880 AGTCCAGAGGA
s gorGor5.CYUI01015946v1         5531 11 -    378907 AGTCCAGAGGA
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106506650 11 - 171882078 AGTCCAGAGGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20332637 11 -  24206276 AGTCCCGAGGA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       296215 11 +   4111199 AGTCCAGAGGA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             484376 11 -   3282555 AGTCCAGAAGG
i saiBol1.JH378276          C 0 I 3
s otoGar3.GL873530            6741346 11 -  36342412 AGTCTGGAAGA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       270535 22 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               18835919  0 - 121039945 C

a score=214163.000000
s hg38.chr15_KI270850v1_alt     82317 116 +    430880 -A---TTATTTTCATTTATCTGACCAATTTATAATATAGGGTCAAATTCCTAGTGGT----TATCCTCCCTCA---TCCCCATTTTTATACCCTTCCTTGAAAGGAACAGGTATATGAAGAGGAGAC
s gorGor5.CYUI01015946v1         5542 116 -    378907 -A---TTATTTTCATTTATCTGACCAATTTATAATATAGAGTCAAATTCCTAGTGGT----TATCCTCCCTCA---TCCCCATTTTTATACCCTTCCTTGAAAGGAACAGGTATATGAAGAGGAGAC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106506661 120 - 171882078 -A---TCGTTTTCATTTATCTGACCGATTTATAATATAGGGTCAAATTCATAGTGGTTGTCTATCCTCCCTCA---TCCCCATTTTTGTACCCTTCCTTGAAAGGAACATATATATGAAGAAGATAC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20332648 123 -  24206276 -ATCGTCGTTTTCATTTATCTGACCGATTTATAATATAGGGTCAAATTCATAGTGGTTGTCTATCCTCCCTCA---TCCCCATTTTTGTACCCTTCCTTGAAAGAAACATATATATGAAGAAGATAC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       296226 122 +   4111199 -ATCATTG-TTTCATTTATCTGACCGATTTATAATATAGGGTCAAATTCATAGTGGTTGTCTATCCTCCCTCA---TCCCCATTTTTGTACCCTTCCTTGAAAGGAACATATATATGAAGAAGATAC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             484390 114 -   3282555 ----ATTGTTTTCATTTATCTGACCAATTTATAATATAGGGTCAAAGCCTTAGTGGTTATCTATCTTCTCT---------CATTTTTATACCCTTCCTTGAAAGGAACAGATACCTGAAGAGGAGAC
i saiBol1.JH378276          I 3 I 3
s cebCap1.NW_016107979v1       270557 114 -   1024465 ----ATTGTTTTCATTTATCTGACCAATTTATAATATAGGGTCAAATTCTTAATGATTATCTATCTTCTCT---------CATTTTTATACCCTTCCTTGAAAGGAACAGATACCTGAAGAGGAGAC
i cebCap1.NW_016107979v1    I 22 I 105
s otoGar3.GL873530            6741357 122 -  36342412 AATCGTTGTTTTCATTTATCTGGCTAGTTTATAAT-----GTCAAAATCCTAGTGCTTATCTATCTTGCCGCAGGGTCCCCATTTTTATGCCCTTCCTTGAAAGGAACAAATATATGAAGAGGACCC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               18835919   0 - 121039945 C

a score=-3774.000000
s hg38.chr15_KI270850v1_alt     82433 2 +    430880 --AG
s gorGor5.CYUI01015946v1         5658 2 -    378907 --AG
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106506781 2 - 171882078 --AT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20332771 2 -  24206276 --AT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       296348 2 +   4111199 --AG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             484507 1 -   3282555 --G-
i saiBol1.JH378276          I 3 C 0
s otoGar3.GL873530            6741479 3 -  36342412 TTA-
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       270671 105 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               18835919 0 - 121039945 C

a score=255343.000000
s hg38.chr15_KI270850v1_alt     82435 158 +    430880 GTTTCCCTTTTGTGAATAGTATATCCCTTAGTATCTTGATTTTTTT-TTGGTGGGGGTGGGGGGAGTTAAACTTACTTAGACCTGGTAAAGGGCAGTATTTGATAAATGTCAGCTAGTTTAGGGTTAGGGAATTGAGTTGAATGGAGATAGTCACTGCC
s gorGor5.CYUI01015946v1         5660 158 -    378907 GTTTCCCTTTTGTGAATGGTATATCCCTTAGTATCTTGATTTTTTT-TTGGTGGGGGTGGGGGGAGTTAAACTTACTTAGACCTGGTAAAGGGCAGTATTTGATAAATGTCAGCTAGTTTAGGGTTAGGGAATTGAGTTGAATGGAGATAGTCACTGCC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106506783 158 - 171882078 GTTTCCCTTTTGTGAATAGTATATCCCTTAGTATCTTGATTTTTTTCTTAGTGTGGG-GGGCACAGTTAAACTTACTTAGACTTGATAAAGGGCAGTATTTGATAAATGTCAGCTAGTTGAGGGGTAGGGAATTGAGTTGACTGGAGATAGTCACTGCC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20332773 157 -  24206276 GTTTCCCTTTTGTGAATAGTATATCCCTTAGTATCTTGATTTTTTTCTTAGTGTGGG-GGGCACAGATAAACTTACTTAGACTTGATAAAGGGCAGTATTTGAT-AATGTCAGCTAGTTGAGGGGTAGGGAATTGAGTTGACCGGAGATAGTCACTGCC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       296350 158 +   4111199 GTTTCCCTTTTGTGAATAGTATATCCCTTAGTATCTTGATTTTTTTCTTAGTGTGGG-GGGCGCGGTTAAACTTACTTAGACTTGATAAAGGGCAGTATTTGATACATGTCAGCTAGTTGAGGAGTAGGGAATAGAGTTGACTGGAGATAGTCACTGCC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             484508 135 -   3282555 GTTTCCCTTTTGTGAATAGTATATCCCTTAGTATCTTGATTTTTGT-----TGC---TGGTGGTGGTTAAACTTACTTAGACTTGGAAAAGG----------------GTCGGCTAGTTGAGGGGTGGGGAATTGAGTTGAATGAAGATAGTCACTGCC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       270776 154 -   1024465 GTTTCCCTTTTGTGAATAGTATATCCCTTAGTATCTTGATTTTTGT-----TGTTGGTGGTGGTGGTTAAACTTACTTAGACTTGGAAAAGGGTAGTGTTTGATAAATGTCAGCTAGTTGAGGGGTGGAGAATTGAGTTGAATGAAGATAGTCACTGCC
i cebCap1.NW_016107979v1    I 105 C 0
s otoGar3.GL873530            6741482 133 -  36342412 GTTTCTCTTTGGTGAATGGTATATCCCTCAATA-----ACTTTTTT-GGGGGGTGAGGTGGGGGGGTTAATCTTAGATGGA------AAAGAGTAGTA--AGGTGAATGTCAGCTCATTGAGGAGTGGGCAAATGAATTGCA-------AGCCA-----
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               18835919   0 - 121039945 C

a score=183997.000000
s hg38.chr15_KI270850v1_alt     82593  95 +    430880 AAATGTAAAGCATGACTGGAGAGCCACAGTGATGAAGCCAGGGT-CCCTTTCTCCAGATCCTTTGTAACAGTGTTATGTGATCTCTTCTAGA-------------------------------------------------------------------------------------AGAT
s gorGor5.CYUI01015946v1         5818  95 -    378907 AAATGTAAAGCATGACTGGAGAGCCAGAGTGATGAAGCCAGGGT-CCCTTTCTCCAGATCCTTTGTAACAGTGTTACGTGATCTCTTCTAGA-------------------------------------------------------------------------------------AGAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18835919  42 - 121039945 AAATGTAAAGCATGACTGGAGACCCAGAGTG------------------------------------------------------TTCTAGA-------------------------------------------------------------------------------------AGAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106506941  95 - 171882078 AAATGTAAAGCATGCCTGGAGAGCCAGAGTGATGAAGCCAGGGT-CCCTTTCTCCAGAGCCTTTGTAACAGTGTTATGTGATCTCTTCTAGA-------------------------------------------------------------------------------------AGAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20332930  95 -  24206276 AAATGTAAAGCATGACTGGAGAGCCAGAGTGATAAAGCCAGGGT-CCCTTTCTTCAGATCCTTTGTAACAGTGTTATGTGATCTCTTCTAGA-------------------------------------------------------------------------------------AGAT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       296508  95 +   4111199 AAATGTAAAGCATGACTGGAGAACCAGAGTGATGAAGCCAGGGT-CCCTCTCTTCAGATCCTTTGTAACAGTGTTATGTGATCTCTTCTAGA-------------------------------------------------------------------------------------AGAT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             484643  93 -   3282555 AAATGTAAAGCATGACTGGAGAGCCAGAGTGATAAAGCAAGGGT-CCCATTC--CAGATCCTTTGTAACAGTGTCATGTGATCTCTTGTAGA-------------------------------------------------------------------------------------AGAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       270930  94 -   1024465 AAATGTAAAGCATGACTGGAGAGCCACAGTCTTAAAGCAAGGGTCCCCATTC--CAGATCCTTTGTAACAGTGTTATGTGTTCTCTTCTAGA-------------------------------------------------------------------------------------AGAT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530            6741615 175 -  36342412 -----TAAAGCACTCCTGGAGAGCCAGAGTGATAAAGGATGGGT-CCTTTTCCCCAAGTCCTTTCTAACAGTGTTAAGTGATTTCTTCtagatcagtggttctctaccttcctaatgccacagccctgtaatacaattcctgtgggtcacaacccacacgttgagaaccactgttCTAGAT
i otoGar3.GL873530          C 0 I 142
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=877564.000000
s hg38.chr15_KI270850v1_alt     82688 416 +    430880 TGTTCTGAAAGATAATGCC--AACTCGGAACCTAGGAAACCATCCAGTGGGTTTCTGCAGCTTAGGTGGTTCAAATCCTCATCAGCACGTTTGTTTTCTCTGCCTCAGTTTGCT--TACAGTGATGTTCTCAGTAGCTGTAA-TTG----CTGTCTTTGAATACTTAAGC---ATTTTTTTTTTAGCTCACAGGG-GTATGTGTGCATTTTTCTTTTACCAAGTGTTAGAACTTTGACTCTGCTTTTGTGGGCTCTGGTTTAGCAACTTGGTTGTTTAGTTGTAAAATGATTAGTAGGGAAAACCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTTAAGTTTCTTT---TGTTCTCAGAGCACTTAGA-----ATT-----------TTATATGGAAATTCTATCAGTTTACTTGATTCTCCACCCCACATT
s gorGor5.CYUI01015946v1         5913 407 -    378907 -GTTCTGAAAGATAATGCC--AACTCGGAACCTAGGAAACCATCCAGTGGGTTTCTGCAGCTTAGGTGGTTCAAATCCTCATCAGCACGTTTGTTTTCTCTGCCTCAGTTTGCT--TACAGTGATGTTCTCAGTAGCTGTAA-TTG----CTGTCTTTGAATACTTAAGC---ATTTTTTTTTTAGCTCACAGGG-GTATGTGTGCATTTTTCTTTTACCAAGTGTTAGAACTTTGACTCTGCTTTTGTGGGCTCTGGTTTAGCAACTTGGTTGTTTAGTTGTAAAATGATTAGTAGGGAAAACCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt--------ATTTTAAGTTTCTTT---TGTTCTCAGAGCACTTAGA-----ATT-----------TTATATGGAAATTCTATCAGTTTACTTGATTCCCCACCCCACATT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18835961 399 - 121039945 CGTTCTGAAAGATAATGCC--TACTCGGGACCTAGGAAACCATCTAGTGGGTTTCTGCAGCTTAGGTGGTTCAAATCCTCATCAGCACCTTTGTTTTCTCTGCCTCAGTTTGCT--TACAGTGATGTTCTCAGTAGCTGTAA-TTGCTGTCTGTCTTTGAATACTTAAGC---A---TATTTTTAGATGACAGGG-ATATATGTGCATTTTTATTTTACCAAGTGTTAGAATTTTTACTCTGCTTTTGTGGTCTCTGGGTTAGCTACTTGGTT-----GTTGTAAAATGATTAGCAGGGAAAACtgtgcgtgtgtgtgtgtatgtgtgt------------------ATTTTAAGTTTCTTT---TGTTGTCGGAGGACTTCGAATTTTATT-----------TTATATGGTAATTCTGCCAATTTGCTTTATTCTCCATCCCACATT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106507036 409 - 171882078 CATCCCGAAAGATAATGCC--AGCTCGGAACCTAGGAAACCATCCAGCGGGTTTCTGCAGCTTAGGTGGTTCAAATCCTCTTCAGCATGTTGGTTTTCTCTGCCTCAGTTTGCT--TACAATGATGTTCTCAGTAGCTGTAA-TTGCTGTCTGTCTTTGAATACTTAAGCTTTT--TTTTTTTTAGCTCACACAG-GTATGTATGCATTTTAATTTTACCAAGTGTTAGAACTTTGACCCTCCTTTTGTGGGCTCTGGGTCAGCAACTTGGTTGTTTAGTTGTAAAATGGTTAGCAGGGAAAAACgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt------------ATTTTAAGTTGATTT---TGTTGTCAGAGCACTTAGA-----ATT-----------TTATATGGAAATTCTGTCAGTTTACTTGATTCTCCACCCCACGTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20333025 400 -  24206276 CATCCCGAAAGATAATGCC--AGCTCGGAACCTAGGAAACCATCCAGTGGGTTTCTGCAGGTTAGGTGGTTCAACTCCTCTTCAGCATGTTGGTTTTCTCTGCCTCAGTTTGCT--TCCAATGATGTTCTCAGTAGCAGTAA-TTGCTGTCTGTCTTTGAATACTTAAGC---A--TTTCTTTTAGCTCACACAG-GTATGTATGCATTTTTATTTTACCAAGTGTTAGAACTTTGACCCTTCTTTTGTGGGCTCTGGGTCAGCAACTTGGTTGTTTAGTTGTAAAATGGTTAGCAGGGCAAAAC------gtgtgtgtgtgtgtgtgtgtctgt------------ATTTTAAGTTGATTT---TGTTGTCAGAGCACTTAGA-----ATT-----------TTATATGGAAATTCTGTCAGTTTATTTGCTTCTCCACCCCACATT
i chlSab2.chr29             C 0 I 13
s colAng1.NW_012116021v1       296603 401 +   4111199 CATCCTGAAAGATAATGCC--AACTCGGAACCTAGGAAACCATCCAGCGGGTTTCTGCAGGTTAGGTGGTTCAAATCCTCTTCAGCATGTTGGTTTTCTCTGCCTCAGTTTGCT--TACAATGATGTTCTCAGTAGCTGTAA-TTGCTGTCTGTCTTTGAATACTTAAGC---A--TTTTTTTTAGCCCACACGG-GTATGTATGCATTTTTATTTTACCAAGTCTTAGAAC-TTGACCCTCCTTTTGTGGGCTCTGGGTTAGCAACTTGGTTGTTTAGTTGTAAAATGATTAGCAGGGAAAAAC----gtgcgtgtgtgtgtgtgtgtgtctgt------------ATTTTAAGTTGATTT---TGTTGTTAGAGCACTTAGA-----ATT-----------TTATATGGAAATTCTGTCAGTTTACTTGATTCTCCACCCCACATT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             484736 392 -   3282555 CGTTCTGAAAGATAATGCC--AACTTGGAACCCAGGAAACCATCCAGTGGGTTTCTGCAGCTTAGGTGGTTCAAATCGTCATCAGCACATTTGTTTTCTCTGCCTCGGTTTGCT--TATAATCATTTTCTCAGTAGCTGAAATTTGCTGCTTGTGTTTGACTACTGAAGC---ATTTTCTTTTTAT----CATGG-GTATATAAACATTTTTATTTT-ATAAGTGTTAGAATTTTTCCTCTGCTTTTGTCGGCTCTACCTTATTTACTTGGTTGTCTATTTATAAAGTGATTAACAGGGAA----------CCCTGTGTGCAC------------------------ATTTTAAGTATCCTT---TGTTGCTAGAGCAGTTAGA-----ATTTTTTTAAGGCATTATATGCTAATTCTGTCAATTTACTTCATTCTTCA-CCCACATT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271024 393 -   1024465 CGTTCTGAAAGATAATGCC--AACTCGGAACCTAGGAAACCATACAGAGGGTTTCTGCAGCTTAGGTGGTTCAAATCGTCATCAGCACATTTGTTTTCTCTACTTC--TTTGCTTATATAATGGTGTTCTCAGTAGCTGAAATTTGCTGCTTGTGTTTGACTACCGAAGC---ATTTTCTTTTTAT----CATGG-GTATATAAACATTTTTATTTTAACAAGTGTTAGAATTTTTCCTCTGCTTTTGTCGGCTCTACCTTAGCTGCTTGGTTGTCTATTTATAAAATGATTAGCAGGGAA----------CCGTGTGTGCAC------------------------ATTTTAAGTATCTTT---TGTTGTCAGAGCAGTTAGA-----ATTTTATTAAGGCATTATATGCTAATTCTGTCAATTTACTTCATTCTTCA-CCCACATT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530            6741932 410 -  36342412 TGTTCTAGATGATCATTCTGAGACTCAGAACCAAAGAAACTATCCAGTGGGTTTCTGCAGCTCAGGTGGTTCAAATCCTCTCTAGCACCTTTGTTTTCTCTGCCTCAGTTCACT--TAGAGTGATGTTCTGAGTAGCTGTAATTTGTTGCCTGTGTTTGGATACTTAAGC---A---TTTTTTTAAATCATAGGGTATATTTATGCATTTTTCTTTAACCAAGTGTTAATACTTTTACTCAGATTTTGTGGGTTCTGGGTTAGGTACTTGATTGCTTACTTGTAAAATGATTAGCAAGGAATAGTATATAGTTCTGTATATAT------------------------ATTTTTAGTGATTTTTAATATGGTCAGAGCACTTAGA-----ATTTTATTAAGGTAGTATATAGTAATTTTGCCAGTTTACTTCATTCTTCATCTC-CATT
i otoGar3.GL873530          I 142 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=28727.000000
s hg38.chr15_KI270850v1_alt     83104 14 +    430880 TCTTAAACAGC-AAA
s gorGor5.CYUI01015946v1         6320 14 -    378907 TCTTGAACAGC-AAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18836360 14 - 121039945 TATTGAACAGC-AAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106507445 14 - 171882078 TATTGAACAGC-AAA
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       297004 14 +   4111199 TATTGAAGAGC-AAA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             485128 15 -   3282555 TATTGAACAGCAAAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271417 14 -   1024465 TATTGAACAGC-AAA
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530            6742342 14 -  36342412 TATTGAACAGC-AAA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29              20333425 13 -  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=144577.000000
s hg38.chr15_KI270850v1_alt     83118 57 +    430880 GTATGAAGGTAATGTGTCCCGTAACCAGCCTTCAGAATAATT-ACAGCTGCTGTGTCT
s gorGor5.CYUI01015946v1         6334 57 -    378907 GTATGAAGGTAATGCGTCCCATAACCAGCCTTCAGAAGAATT-ACAGCTGCTGTATCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18836374 57 - 121039945 GTATGAAAGTAATGTGTTCCATAAGCAGCCTTCAGAAGAATT-ACAACTGCTGTATAT
i nomLeu3.chr6              C 0 I 300
s macFas5.chr7              106507459 57 - 171882078 GTTTGAAAGTAATGTGTCCCATAACCAGCCTTCAGAAGAATC-ATAACTGCTTTATCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20333438 57 -  24206276 GTTTGAAAGTAATGTGTCCCATAACCAGCCTTCAGAAGAATC-ACAACTGCTTTATCT
i chlSab2.chr29             I 13 C 0
s colAng1.NW_012116021v1       297018 57 +   4111199 GTTTGAAAGTAATGTGTCCCATAACCAGCCTTCAGAAGAATC-ACAACTGCTTTATCT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             485143 57 -   3282555 GTATGAAAGTAATGTGTCCCATAACTGGCCTTCAGGAAAATT-ATAACTGCTGTATCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271431 57 -   1024465 GTATGAAAGTAACGTGTCCCATAACTGGCCTTCAGGAGAATT-ATAACTGCTGTATCT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530            6742356 56 -  36342412 GTGTGAAAGTA--TTGTTCTATAATTGGTCTCCAGAAGAATTAACAACTGCTGTGTCT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=945309.000000
s hg38.chr15_KI270850v1_alt     83175 373 +    430880 CTGAACTTTC---AAGAAGTTTGTGCATCAATT-----TTCAAAAAATTATGAAATCCTTGAAGATAGCTGTGTTCTA-CATTTGGAAAGATACAAAAACTGAACCTTCTAGCAGGCAGTTTTGCTTGCTGGTGCTTGCGATAGAGCCACACATTGGTCTC--AGTGGATTTATGGAGAAAAATAGGTACGGAAAGTTATTTCTAAATAAGA--------CCAAAAATCCTTTTCTTAAGCAGTGACAGGTAAAGAGGTTGTCTTGGCTAATATTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGTGGGGATGGTAGTGGTGATAAACTTGTTTGAAATTTGTCCACCTATAGTAACCTTTGTGGTAGCTGTCACAGACAGCTTCAT
s gorGor5.CYUI01015946v1         6391 373 -    378907 CTGAACTTTC---AAGAAGTTTGTGCATCAATT-----TTCAAAAAATTATGAAATCTCTGAAGATAGCTGTGTTCTA-CATTTGGAAAGATACAAAAACTGAACCTTCTAGCAGGCAGTTTTGCTTGCTGGTGCTTGAGATAGAGCCACACATTGGTCTC--AGTGGATTTATGGAGAAAAATAGGTACAGAAAGTTATTTCTAAATAAGA--------CCAAAAATCCTTTTCTTAAGCAGTGACAGGTAAAGAGGTTGTCTTGGCTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGTGGGGATGGTAGTGGTGATAAACTTGTTTGAAATTTGTCCACCTATAGTAACCTTTGTGGTAGCTGTCACAGACAGCTTCAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18836731 374 - 121039945 cTGAACTTTCCAGAAGAAGTTTGTGCATCAGTT-----TTCAAAAAATTATGTTATC---AAAAATAGCTGTGCCCTA-CATTTGGAAAGATACAAAAACTGAACATACTGGCAGGCAGTTTTGCTTGCTGGTGCTTGAGATAGAGGCACACATTGGTCTC--AGTGGATTTATGGAGAAAAATAGATACAGAAAGTTATTTCTAAATAAGAC-------CCAAAAATCCTTTTCTTAAGCAGTGACAGGTAAAGAGGTTGTCTTGGCTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGTGGGGATGGTAGTGGTGATAAACTTGTTGGAAATTTGTCTGCTTATAGTAACCTTTGTGGTAGCTGTCACAGACAACTTCAT
i nomLeu3.chr6              I 300 n 300
s macFas5.chr7              106507516 373 - 171882078 CTGAACTTTC---AAGAAGTTTGTGCATCAGTT-----TTCAAATAA-TACGAAATCCCTGAAGATAGCTGTGTCTTA-TATTTGGAAAGATACAAAAACTGAACATTCTAGCAGGCAGTTTTGCTTGCTGATGCTCGAGATAGAGCCACACATTGATCTC--AGTGGATTTATGGAGAAAAATAGATACAGAAAGTTACTTCTAAATAAGAC-------CCAAAAATCCTTTTCTTAAACAGTGACAGGTAAAGAGGTTGTCTTGGCTAACCTTGAATTGTGTTGCCCTTGATTAAGACAGTTTTATGGTGGGGATGGTAGCGGTGATAAACTTGTTTGAAATTTGTCTGCTTATAGTAACCTTTGTGGTAACTGTCACAGACAACTTCAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20333495 376 -  24206276 CTGAACTTTCAAGAAGAAGTTTGTGCATCAGTT-----TTCAAATAA-TACGAAATCCCTGAAGATAGCTGTGTCCTA-TATTTGGAAAGATACAAAAACTGAACATTCTAGCAGGCAGTTTTGCTTGCTGATGCTCGAGATAGAGCCACACATTGATCTC--AGTGGATTTATGGAGGAAAATAGATACAGAAAGTTACTTCTAAATAAGAC-------CAAAAAATCCTTTTCTTAAACAGTGACAGGTAAAGAGGTTGTCTTGGCTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGTGTGGATGGTAGCGGTGACAAACTTGTTTGAAATTTGTCTGCTTATAGTAACCTTTGTGGTAACTGTCACAGACAACTTCAT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       297075 372 +   4111199 CTGAACTTTC---AAGAAGTTTGTGCATCAATT-----TTCAAATAA-TACGAAATCCCTGAAGATAGCTATGTCCTA-CATTTGGAAAGATACAAAAACTGAACATTCTAGCAAGCAGTTTTGCTTGCTGATGCTTGAGATAGAGCCACACATTGATCTC--AGTGGATTTATGGAGAAAAATAGATACAGAAAGTTACTTCTAAATAAGAC-------CGAAAAATCCTTTTCTTAAGCAGTGACAGGTAAAGAGGTTGCCTT-GCTAACCTTGAATTATGTTGCCCTTGATTGAGACAGTTTTGTGGTGGGGATGGTAGTGGTGATAACCTTGTTTGAAATTTGTCTGCTTATAGTAACCTTGGTGGTGGCTGTCACAGACAACTTCAT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             485200 381 -   3282555 CTGAACCATCAACAAGAAGTTTGTGCATCAATTAAAAAAAAAAAAAATCACAAAATCCCTGAAGATAGCTGTGTCCTA-CATTTGGAAAGATACAAAAACTGACCATTCTGGCAGGCAGTTTTGCTTGCTGGTGCTTGAGATAGAGCCACATAATGGTCTC--AGTGGATTTATGGAGAAAAATAGATACAGAAAGTTATTTCTAAATAAGACAACAACAACAAAAATC-----CTTAAGCAGTGACAGATAAAGAGGTTGGCTTGGTTAGCCTTGAGTCGTGTT---CTCGATTAAGACGGTTTTATGGTGGGGATGGTAGCAGTGATGAACTTGCTTGAAATTTGTCCACTTACAGTAATCTTTATGGTAGCTGTCACAGACAACTTCAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271488 378 -   1024465 CTGAACCATTGACAAGAAGTTTGTGCATCAATT------TAAAAAAATCACGAAATCCCTGAAGATGGCTGTGTCCTA-CATTTGGGAAGATACAAAAACTGACCATTCTGGCAGGCAGTTTTGCTTGCTGGTGCTTCAGATAGAGCCACACAATGGTCTC--AGTGGATTTATGGAGAAAAATAGATACAGAAAGTTATTTCTAAATGAGACAACAACAACAAAAATC-----CTTAAGCAGTGACAGGTAAAGAGGTTGGCTTGGTTAGCCTTGAGTCGTGTTCTCCTCGATTAAGACAGTTTTATGGTGGGGATGGTAGCAGTGATGAACTTGCTTGAAGTTTGTCCACTTACAGTAATCTTTATGGTAGCTGTCACAGACAACTTCAT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530            6742412 335 -  36342412 CTGAACCTTCAACAAGAAGTATGTGCAAAAATT-----TCCAAAT---TATGAAATCCCTGGAGATAGCTGTGTCCTACCATTTGGAAAGACAGTAAAACTGAGCATTCTGTCAAGCAGTTTTGCTGGCTGATGCTTGAG--AGAGCCACACATTGGTCTCTTAGTGGATTTATGTAGAAAAA----TATAGAAATTTATTT---------------------------------TTAAGCAGTCACAGGCAAAGAAGTTGGCTTGATGAACTTTGAGCTGTGTTGCCCCATGTTAGGACAAGTTTATGGTGGGGATGGT---------GAACTTGTTTGAAG-TTGTCTGTTTACAGTAACCTTTATGTTGGCTGTCATGGACAACTTCAT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=901662.000000
s hg38.chr15_KI270850v1_alt     83548 376 +    430880 CCTCACAGGCCCTAAAATTACTATAAAACTAAT---AGATTGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTCTGT-------------------GTTTTCATAACAAGTG------AAAAAGAGCAGTGTTAGAAGTACTTAAACTTTCCATGTAAGGAGCACTGCCTGAATTTATATTGTGATTTTAGAGCATCATTCACTGTTTAAAAA-CAGGCATATT-GTGGGTCA----TATTTTAAAGACAAACA----GAAAGCTTATCTTTTCAAGATGGATCTAAAGC----TTAACCTTATCAAAATTACAAAATGTGAAGGATATGA---TTGAAAAATATTAATGCATAGGTTTAAATATTGGTCATCATTTTAGATGTCTTTCAAAA-----TAGGTTGTCTCTT
s gorGor5.CYUI01015946v1         6764 377 -    378907 CCTCACAGGCCCTAAAATTACTATAAAACTAAT---AGAATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTCTGT-------------------GTTTTCATAACAAGTG------AAAAAGAGCAGTGTTAGAAGTACTTAAACATTCCATGTAGGGAGCACTGCCTGAATTTATATTGTGATTTTAGAGCATCATTCACTGTTTAAAAAACAGGCATATT-GTGGGTCA----TATTTTAAAGACAAACA----GAAAACTTATCTTTTCAAGATGGATCTAAAGC----TTAACCTTATCAAAATTACAAAATGTGAAGGATACGA---TTGAAAAATATTAATGCATAGGTTTAAATATTGGTCATCATTTTAGATGTCTTTCAAAG-----TAGGTTGTCTCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125163 376 + 121039945 CCTCACAGGCCCTAAAATTACTATAAAACTAAT---AGAATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTCTGT-------------------GTTTTCATAACCGGTG------AAAAAGTGCAGTGTTAGAAGTACTTAAACATTCCATGTAAGGAACACTGCCTGAATTTATATTGTGATTTTAGAGCATCATTCACTGTTTAAAAA-CAGGCATATT-GTGGGTCA----TATTTTAAAGACAAATA----GAAAACTTATCTTTTCAAGATGGATATAAGGC----TTAACCTTATCAAAATTACAAAATGTAAAGGATATGA---TTGAAAAATATTAATGCATAGGTTTAAATATTGGTCATCATTTTAGATGTCTTTCAAAA-----TAGGTTGTCTCTT
i nomLeu3.chr6              I 17438 C 0
s macFas5.chr7              106507889 373 - 171882078 CCTCACAGGCCTTAAAATTACTATAAAACTAAC---AGAATGGAGAAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTC--T-------------------GTTTTCATAACTGGTG-----AAAAAAAAGCAGTATTAGAAGCAATTACACATTCTATGTAAGGAATACTGCCTGAATTTATATTGCGATTTTTGAGCACCATTCACTGTTTAAAAG-CTGGCATATT-GTAGGTCA----TATTTTAAAGACAAATA----GAACACTTATCTTTTCAAGATGGATCTAAAGC----TTAACCTTATCAAAATTACAAAATTTAAAGCATGTGA---TTGAAAAATATTAATGCATAGGTTTAAATATTGGTCATCATTTTAAATGTCTTTCAAAA-----TAGGTTGACTC--
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20333871 372 -  24206276 CCTCACAGGCCTTAAAATTACTATAAAACTAAT---AGAATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTC--T-------------------GTTTTCATAACTGGTG------AAAAAGAGCAGTATTAGAAGCAATTACACATTCTATGTAAGGAACACTGCCTGAATTTATATTGCGATTTTTGAGCACCATTCACTGTTTGAAAG-CTGACATATT-GTAGGTCA----TATTTTAAAGACAAATA----GAACACATATCTTTTCAAGATGGATATAAAGC----TTAACCTTATCAAAATTACAAAATGTAAAGCATGTGA---TTGAAAAATATTAATGCATAGGTTTAAATATTGGTCATCATTTTAAATGTCTTTCAAAA-----TAGGTTGACTC--
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       297447 374 +   4111199 CCTCACAGGCCTTAAAATTACTATAAAACTAAT---AGAATGGAAGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTCTGT-------------------GTTTTCATAACTGGTG------AAAAAGAGCAGTATTAAAAGCAATTACACACTCTATGTAAGGAACACTGCCTGAATTTATATTGCGATTTTTGAGCACCGTTCACTGTTTAAAAG-CTGGCATATT-GTAGGTCA----TATTTTAAAGACAAATA----GAACACTTATCTTTTCAAGATGGATCTAAAGC----TTAACCTTATCAAAATTACAAAATTTAAAGCATGTGA---TTGAAAAATATTAATGCATAGGTTTAAATATTGGTCATCATTTTAAATGTCTTTCAAAA-----TAGATTGACTC--
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             485581 378 -   3282555 CCTCACAGGACTTACAATTACTATAAAACTAAT---AGAATGGAGGAGGAACAAAGGACCCGAATAATTAGACGCTTAGATAATTGTTCTGT-------------------GTTTTCCTAACTGTGG------TGAAAGAGCAGTGCTAGAAGCACGTAAACATTGTATGTGTGGAAAACTGCCTGAATTTCTATTGGGATTTTAGAGCACCATT----------AAA-CTGGCATATT-GTAGGTCATAATTATTTTAAAGAGAAATAGTAGGAAAACTTATCTTTTCAAGATGGATATAAAGCTTAGTTAACCTTATCAAAATTACAAAACTTAAAGGATGTGA---ATTGAAACTATTAATGCATAGGTTTAAATATTAGGCATCATTTTAGATGTCTTTCCAGG-----TAGAttgtctttt
i saiBol1.JH378276          C 0 I 5917
s cebCap1.NW_016107979v1       271866 372 -   1024465 CCTCACAGGAC------TTACTATAAAACTAAT---AGAATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTCTGT-------------------GTTTTCATAACTGTGG------TGAAAGAGCAGTGCTAGAAGCACTTAAACATTGTATGTCTGGAAAACTGCCTGAATTTATATTGGGATTTTGGAGCACCATT----------AAA-CTGGCATATT-GTAGGTCATATTTATTTTAAAGAGAAATAGTAGGAAAACTTATCTTTTCAAGGTGGATATAAAGCTTATTTAACCTTATCAAAATTACAAAACTTAAAGCATGTGA---ATTGAAAATATTAATGCATAGGTTTAAATATTAGGCATCATTTTAGATGTCTTTCCAAG-----TAGATTGTCTCCT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530            6742747 406 -  36342412 -CCTGCAAGCCTTAAAATCATTGCTAAACTAATAGAAGAATGGAGTAGAAACAAAGGACCTAAATAATTAGATGCTTGGACAATTTTTTTGTATGTACTTAAGTCTTTAAAATTTTCAAAACTGTGGTTTTTAAAAAAGAGCTGTGTTAGAAGC----AAACATCCTGT-TAAGGAAAACTGCCTG-ACTCCTATTGGGATTTTTGAGCATCATTTAATGTTTAAAAA-TTGGCATATTAACAGGTCA------TTTAAAAAAGCCATAGTAAGAAAAC-TATCTTTTCAAGATAGATACAAAGCCCAGTTAACCTTATAAAAATCAGAAAACTTGAAGTGTATGAAAGATTGAAAATATTAATATATAGGTTTAAGAATTGG---TCATTTTAAA--TCTTTCAAAATACTGTAGATTGTCTTTT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=168286.000000
s hg38.chr15_KI270850v1_alt     83924 97 +    430880 AAATATTAAACTGAACAAACATTGAACTTGTTGTAGAGTTTGTGCTCAAGGTTAAGTTTCCTGGGGTGATGG--ATATTTGATAATATGGATAACaaaa
s gorGor5.CYUI01015946v1         7141 97 -    378907 AAATATTAAACTGAACAAACATTGAACTTGTTGTAGAGTTTGTGCTCAAGGTTAAGTTTCCTGGGGTGATGG--ATATTTGATAATATGGATAACAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125539 97 + 121039945 AAATATTAAACTGAACAAACATTGAACATGTTGTAGAGTTTGTGCTCAAGGTTAAGTTTCCTGGGGTGATGG--ATATTTTATAATATGGATAACAAAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106508262 92 - 171882078 -----TTAAACTTAACAAATTTTGAACACTATGTAGAGTTTGTGCTGAAGGCTAAATTTCCCGGGGTGATGG--CTATTTTATAATATGGAAAGCAAAA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20334243 92 -  24206276 -----TTAAACTGAACAAATTTTGAACACTATGTAGAGTTTGTGCTGAAGGTTACATTTCCTGGGGTGATAG--CTATTTTATAATATGGAAAGCAAAA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       297821 92 +   4111199 -----TTAAACTGAACAAATTTTGAACACTATGTAGAGTTTGTGCTGAAGGTTAAATTTCCTGGGGTGATGG--CTATTTTATAATATAGAAAGCAAAA
i colAng1.NW_012116021v1    C 0 C 0
s cebCap1.NW_016107979v1       272238 97 -   1024465 AAATATTAAACTGAACAAACTTTGAACATGATGTAGAGTTTTTGGTGAAGGTTAAGTTTCCTGGGGTGGTGG--GTATTTTATAATATGGAAAACAAAA
i cebCap1.NW_016107979v1    C 0 I 454
s otoGar3.GL873530            6743153 91 -  36342412 AAATATTAAG-TGAACAAAC-CTGAACA---TGGAGAGTTTGTG---AAGATTAAGTTTCCAGGGGTAGTGGTAGAAATATATAATATAGAACACAAGA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             485959 5917 -   3282555 I

a score=668850.000000
s hg38.chr15_KI270850v1_alt     84021 584 +    430880 agttc-----t----taagaaatttagaaaatttttaggcaaaact---agaaaataatact--gataattctaccactcagaatgtaccactatcagaattttg-----tatctttc--agtcatctgctcatctcttttctcctttgcttgtatgtgttccctctccctt---aaaaaatcagattttt-tttttgtaatctgcattttcactc---aatattgtagatctgtgtcataagt---tactcctctacagtgccttcagttattgtgtgctttgtgttggatgactgtacc-atctagtctttcgtgtttcctggtactgactacataggggtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt-gtgtattttttttc-taccttaactaatgctttggacatcatcaacaggtagagctaa----------------------atccttgAAACCTTCC---AAGTGGTGGCTTTCAGTT---ATTGCTGAATTGGTTTTTAGAGATGGAACAAATTATATTGTATGGAAACt--tttttttttttttttttttttgagacaaagtctca-gcttgtcacccaggctggagggcaatggcatgatcttggctcactaaaacctccacctcccaggt
s gorGor5.CYUI01015946v1         7238 575 -    378907 AGTTC-----T----TAAGAAATTTAGAAAATTTTTAGGCAAAACT---AGAAAATAATACT--GATAATTCTACCACTCACAATGTACCACTATCAGAATTTTG-----TATCTTTC--AGTCATCTGCTCATCTCTTTTCTCCTTTGCTTGTATGTGTTCCCTCTCCCTT---AAAAAATCAGATTTTT-TTT--GTAATCTGCATTTTCACTCGACAATATTGTAGATTTGTGTCATACGT---TACTCCTCTACAGTGCCTTCAGTTATTGTGTGCTTTGTGTTGGATGACTGTACCTATCTAGTCTTTCATGTTTCCTGGTACTGACTACATAGGGGTGAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtATTTTTTTTCCTACCTTAACTAATGCTTTGGACATCA---ACAGGTAGAGCTAA----------------------ATCCTTGAAACCTTCC---AAGTGGTGGCTTTCAGTT---ATTGCTGAATTGGTTTTTAGAGATGGAACAAATTATATTGTATGGAAACt--ttttttttttt----------gagacaaagtctca-ccttgtcacccaggctggagggcaatggcatgatcttggctcactaaaacctccacctcccaggt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125636 580 + 121039945 AGTTCTTATTT----TAAGAAATTTAGAAAATTTTTAGGCAAAACT---AAAAAATAATACT--GATAATTCTATCACTCAGAATGTACCACTATCAGAATCTTG-----TATCTTTC--AGTCATCTGCTCATCTCTTTTCTCCTTTGCTTGTATGTGTTCCCTCTCCCTT---AAAAAATCAGATTTTT-TTT--GTAATCTGCATGTTCACTCAACAATATTGTGGACCTGTGTCATAAGT---TACTCCTGTACAGTGCCTTCAGTTCTTGTGTGCTTTCTGTTGGATGACTGTACC-ATCTAGTCTTTCGTGTTTCCGGGTACTGACTACATAGGGGTGAGAGAGAGAGAGAgtgtgtgtgtgtgtgt---gtgtATTTTTTTTC-TACCTTAACTAATGTTTTGGACAT-A---ACAGGTAGAGCTAA----------------------ATCCTTGAAACCTTCC---AAGTGGTGGCTTTCAGTT---ATTGCTGAACTGGTTTTTAGAGATGGAACAAATTATATTGTATGGAAACt--ttttttttttt----ttttttgaaacaaagtctca-ccttgtcgcccaggctggagggcaatggcatgatcttggctcactacaacctccgcctcccaggt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106508354 583 - 171882078 CCTTC-----T----TAAGAAATTCAGCAATTTTTTAGGCAAAACT---AGAAAATATTACCTATATAATTCTACCACTCAGAAGGTGCCACTATCAGAAATTTG-----TATCTTTCCAAGTCATCTGCTCATCTCTTTTCTCCTATGCTTGTGTATGTTTCCTCTCCCTT----AAAAATCAGATTTTTGTTT--GTAATCTGCTTTTTCACTCAACAATATTGTAGATCCACGTCATAACT---TGCTTCTCTACATTGGCTTCAGTTATTGTGTGCTTTCTGTTGGATGACTGTACC-ATGCAGTCAGTCATGTTTCCTGGTACTGAATACATAGGGgtatgtgtgtgtgtgcgtgcgcgtgtgtgCGC---GTA---TTTTTTTC-TAACTTAACTAATGCTTTAGACATCA---ATAGGTAGACCTAA----------------------ATCCTTGAAACCTTCC---ACGTGGTGACTTTCAATTCTCATTGCTGAATTTGTTTCCAGAGATGGAAGAAATTATATTGTATGGGAACt--tttttttcctt--ttttttttgagatgaagtcttgttcttgtctcccaggctggagtgcaatggcgtgatcacagctcactgcaacctccgcctcccgggt
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20334335 575 -  24206276 CCTTC-----T----TAAGAAATTTAGCAATTTTTTAGGCAAAACT---AGAAAATATTACCTATATAATTCTATCACTCAGAAGGTGCCGC-ATCAGAAATTTG-----TATCTTTCCAAGTCATCTGCTCATCTCTTTTCTCCTATGCTCGTGTATGTTTCCTCTCCCTT----AAAAATCAGATTTTTGTTT--GTAATCTGCTTTTTCACTCAACAATATTGTAGATCCACATCATAA-------TTTCTCTCCATTGGCTTCAGTTATTGTGTGCTTTCTGTTGGATGACTGTACC-GTGTAGTCAGTCATGTTTCCTGGTACTGAATACATAGGGgtgtgtgtgtgtgtgcgtgcgcgtgtgtgtgc---gtA---GTTTTTTC-TAACTTAACTAGTGCTTTAGACATCA---GTAGGTAGACCTAC----------------------ATCCTTGAAACCTTCC---ACATGGTGACTTTCAGTTCTCATTGCTGAATTTGTTTCCAGAGATGGAAGAAATTATGTTGTATGGGAACt--ttttttcc-----ttttttttgaggtgaagtcttgttcttgtctcccaggctggagtgcaatggtgtgatcacagcttactggaacctctgcctcctgggt
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       297913 585 +   4111199 CCTTC-----T----TAAGAAATTTAGCAATTTTTTAGGCAAAACT---AGAAAATATTACCTATATAATTCTACCACTCAGAAGGTGCCACTATCAGAAATTTG-----TATCTTTCCAAGTCATCTGCTCATCTCTTTTCTCCTATGCTTGTGTATGTTTCCTCTCCCTT----AAAAATCAGATTTTTGTTT--GTAATCTGCCTTTTCACTCAACAATATTGTAGATCCATGTCATAACT---TACTTCTCTACATTGCCTTCAGTTATTGTGTACTTTCTGTTGAATGACTGTACC-ATGTAGTCAGTCATGTTTCCTGGTACTGAATACATAGGGATAtgtgtgtgtgtgcgtgcgcgtgtgtgtgc---gtA---TTTTTTTC-TAACTTAACTAATGCTTTGGACATCA---ATAGGTAGACCTAA----------------------ATCCTTGAAACCTTCC---ACGTGGTGACTTTCAATTCTCATTGCTGAATTTGTTTCCAGAGATGGAAGAAATTATATTGTATGGGAACttcttttttccctt--ttttttttgagacgaagtcttgttcttgtctcccaggctggagtgcaatggtgtgatcacagctcactgcaacctccacctcccgggt
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530            6743244 476 -  36342412 CATTC-----TTACGTAAGGAATTTAGAAA-TCTGTaagaagaactgaagaaaaaaatcacc--tgtcatcttaccactcagaagataccactctc--aattttggtatatatctttt--agctgtct---------ctttctcttacacttatatttacTCCCTCCCTCTTCTTAAAAGATCAGATTAT--TTT--GTAATCT---TTCTTACTGCACAATATTGTAGGTTTGTGTCATTAGCACACCGTCCTGTACAGTGGCTCCAATTGTTGT--------------ATGAGTGTACT-ATCTAGTCAGTCTTGTCTCCTAGTACTGCACATATAA------------------------ATGTGTTTGG---GTT---TTTTTTTC-TGTCATAAATAATGCTTTGAACATTA---ATAGCTAGAGCTAATTACTTGTGAATGTAGATCATGTTCTTTGAAACCTTCCTAGAAGTGGTGACTTTAATTTCTTATTGCTGAATTGGTCTCTAG---------AAATTATATTGTATAGGAATT--GTTTTTCCTTC---------------TAGGT----------------------------------------------------------------------
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       272335 454 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             485959 5917 -   3282555 I

a score=9121.000000
s hg38.chr15_KI270850v1_alt     84605 8 +    430880 tcaagtga
s gorGor5.CYUI01015946v1         7813 8 -    378907 tcaagtga
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126216 8 + 121039945 tcaaatga
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106508937 8 - 171882078 tcaagtga
i macFas5.chr7              C 0 I 87
s chlSab2.chr29              20334910 8 -  24206276 tcaagcga
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       298498 8 +   4111199 tcaagaga
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       272335 454 -   1024465 I
e otoGar3.GL873530            6743720 0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             485959 5917 -   3282555 I

a score=84924.000000
s hg38.chr15_KI270850v1_alt     84613 75 +    430880 tcctcttgcctcagcctcccgagtagttgg-gattacaggggcctgccaccatgcccggctaatgtttgtgttttt
s gorGor5.CYUI01015946v1         7821 75 -    378907 ttctcttgcctcagcctcccgagtagttgg-gattacagcggcctgccaccatgcccggctaatgtttgtgttttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126224 75 + 121039945 ttctcttgcctaagcctcccgagtacttgg-gattacaggtgcctgccaccatgcccagctaatttttgtgttttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65242970 75 + 171882078 ttctcctgcctcagcctcccgagtagcagg-gattacaggagcctgccaccatgcctggctaatttttgtattttt
i macFas5.chr7              I 2313 C 0
s chlSab2.chr29              20334918 76 -  24206276 ttctcctgcctcggcctcccaagtagctggtgcgtgcaggtgcgtgccaccatgcctggctaatttttgtattttt
i chlSab2.chr29             C 0 I 47568
s colAng1.NW_012116021v1       298506 75 +   4111199 ttctcctgcctcggcctcccaagtagctgg-gattacaggtgcgtgccaccatgcctggctaatttttgtattttt
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       272335 454 -   1024465 I
e otoGar3.GL873530            6743720  0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             485959 5917 -   3282555 I

a score=166414.000000
s hg38.chr15_KI270850v1_alt     84688 136 +    430880 actagagatggggtttcatcatgttggccaggcttgtctcgaactcctgacctcaggtgatccactcaccttggtctcccaaagtactgggattacaggcatgagccaccatacccagccTTTTTTTCTTCTAGGT
s gorGor5.CYUI01015946v1         7896 136 -    378907 actagagatggggtttcatcatgttggccaggcttgtctcgaactcctgacctcaggtgatccactcaccttggtctcccaaagtactgggattacaggcatgagccaccatacccagccTTTTTTTCTTCTAGGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126299 136 + 121039945 actagagatggggtttcatcatgttggccaggcttgtctcgaactcctgacctcgggtgatccactcaccttggcctcccaaagtactgggattacaggcatgagccaccatacccagccTTTTTTTCTTCTGGGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65243045 136 + 171882078 agtagagatggggtttcatcatgttggccgggctggtctggagctcctgaccttgggtgatccactcaccttggcctcccaaagtgctgggattacaggcatgagccaccacacccggccTTTTTTTCTTCTAGGT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3818646 136 +  24206276 agtagagatggggtttcaccatgttggccaggctggtctggagctcctgaccttgggtgatccactcaccttggcctcccaaagtgctgggattacaggcatgagccaccacacccggccTTTTCTTCTTCTAGGT
i chlSab2.chr29             I 2675 C 0
s colAng1.NW_012116021v1       298581 136 +   4111199 agtagagacgggctttcaccatgttggccaggctggtcttgaactcctgactttaggtgattttcccacctcagcctcccaaagtgttgggattacaggcgtgagcctctgtgcccagccTTTTTTTCTTCTCAGT
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       272335 454 -   1024465 I
e otoGar3.GL873530            6743720   0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             485959 5917 -   3282555 I

a score=255301.000000
s hg38.chr15_KI270850v1_alt     84824 176 +    430880 ACCAGCTTTTATTTATCAGATTGGTATAAATGTTAGAAAGCGTGCAATGAAATGGGCATTTTCACAGTCGTGGCAGAAAGTATAATTATCTTTGACTTTCTAGAAAGCAGTCTGGCATTCTAGAAACTTGCCTAACCTCTTCCCATTTAGACAAGATGAATTCTGAC---------AGGGCCAGC
s gorGor5.CYUI01015946v1         8032 176 -    378907 ACCAGCTTTTATTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAATGAAATGGGCATTTTCACAGTCGTGGCAGAAAGTATAATTATCTTTGACTTTCTAGAAAGCAGTCTGGCATTCTAGAAACTTGCCTAACCTCTTCCCATTTAGACAAGATGAATTCTGAC---------AGGGCCAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126435 184 + 121039945 ACCAGCTTTTATTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAATGAAATGGGCATTCTCACAGTCGTGGCAGAAAGTATAATTATCTTTGACTTTCTAGAAAGCAGTCTGGCA-TCTAGAAACTTGCCTAACCTCTTCCCATTTAGGCAAGATGAATTCTGACTACCCCTAGGTGGCCATC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65243181 185 + 171882078 ACCAGCTTTTACTTATCAGATTGGTAAAAATACTAGAAAGTGTGCAATGAAATGTGCATTCTCACAGTCATGGCAGAAAGTATAATTATCTTTGACTTTCCAGAAAGCAGTTTGGCTTTCTAGAAACTTGCCTAACCTCTTCCCATTTAGGCAAGATGAATTCTGACTACCCCAAGGTGGCCCAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3818782 184 +  24206276 ACCAGCTTTTACTTATCAGATTGGTAAAAATATTAGAAAGTGTGCAATGAAATGGGCATTCTCACAGTCGTGGCAGAAAGTATAATTATCTTTGGCTTTCCAGAAAGCAGTTTGGC-TTCTAGAAACTTGCCTAACCTCTTCCCATTTAGGCAAGATGAATTCTGACTACCCCAAGGTGGCCAAT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       298717 185 +   4111199 ACCAGCTTTTATTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAGTGAAATTGGCATTCTTACAGTCATGGCAAAAAATATAATTATCTTTGACTTTCCAGAAAGTAGTTTGGCTTTCTAGAAACTTGTCTGAACTCTCCCTGTTTAGGCAGGATGAATTCTGACTGCCCCAAGGTGGCCAGC
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530            6743720 164 -  36342412 ACCAGCTT----TTATCAGATTGGAAAAAATGTTAGCAAGTGTGCAGTGAAGTGGGTGTTCTCATAGCCATGGCAGGAAGTATACTT-TTTATGACTTTTTAGAAAGTGATTTGTC--TCCATATACTGGC--------------TCTACGCCTGATGTATATTGACTACCCCAGATAGGCCAAC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       272335 454 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             485959 5917 -   3282555 I

a score=692299.000000
s hg38.chr15_KI270850v1_alt     85000 350 +    430880 CTTGTCCCTGTGATTCCGTATCTCCCAGAAAGAGAG--GTCTAGTCTCAGGGAAAACCCAGATTTTCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATGGGGCGGGCCGGTAGAGTCCTTTGGTCAGGTTTT-GTGTCAAGAGAGGGATGTGGAAAGATGGGAGAGAGGTAGCAAAACTGGCCTCAATGGAACTGTGTAAGTTAACATAGAATGGCAAAGGAATGTTTCTTCCAAGGAAGAAATTCTAG-GGAAGGAA-TAAAGTAGAGGGGAAGGcagcagttctcaaag-ttttggggtcaggattcctttacactcttaaaagtatattgagggcccaaggagctttt
s gorGor5.CYUI01015946v1         8208 350 -    378907 CTTGTCCCTGTGATTCCGTATCTCCCAGAAAGAGAG--GTCTAGTTTCAGGGAAAACCCAGATTTTCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATGGGGTGGGCCGGTAGAGTCCTTTGGTCAGGTTTT-GTGTCAAGAGAGGGATGTGGAAAGATGGGAGGGAGGTAGCAAAACTGGCCTCAATGGAACTATGTAAGTTAACATAGAATGGCAAAGGAATGTTTCTTCCAAGGAAGAAATTCTAG-GGAAGGAA-GAAAGTGGAGGGGAAGGcagcagttctccaag-ttttggggtcaggattcctttacactcttaaaagtatattgagggcccaaggagctttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126619 331 + 121039945 CTTGTCCCTGTGATTCCATATCTCCCAGAAAGAGAG--GTCTAGTCTCAGTGAAAACCCAGATTTTCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATGGGGTGGGCCGGTAGAGTCCTTTGGTCAGGTTTT-GTGTCAAGAGCGGGATGTGGAAAGATGGGAGAAAGATAGCAAAACTGGCCTCAATGGAACTATGTAACTTAACATAGAATGGCAAAGGAATATTCT-------------ATTCTAG-GGAAGGAA-GAAAGTGGAGGGGAAGGcagcagttctcaaag-ttttggggtcaggattcctttacactct------tatattgagggcccaaggagctttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65243366 349 + 171882078 CTTGTCCTTGTGGTTCCATATCTCCCAGAAAGAGAG--GTCTAGTCTCAGGGAAAACTCAGATTTGCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATGGGGTGGGCTGGTAGACTCCTTTGGTCAGGTTTT-GTGTCAAGAGAAGGATGTGGAAAGACGGGAGAGAGGTAGCAAAACTGGCCTCAATTGAACTAAATAAGTTAACGTAGAATGGCAAAGGAATGTTT-TTCCAAGGAAGAAATTCAAG-GGAAGGAA-GAAAGTGGAGGGGAAGAcagcagttctcaaag-ttttggggtcaggatacctttacactcttaaaaatatattgagggcccaaggagctttt
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3818966 349 +  24206276 CTCGTCCCTGTTGTTCCATATCTCCCAGAAAGAGAG--GTCTAGTCTCAGGGAAAACTCAGATTTGCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATGGGGTGGGCTGGTAGACTCCTTTGGTCAGGTTTT-GTGTCAAGAGAAGGATGTGAAACGACGGGAGAGAGGTAGCAAAACTGGCCTCAATGGAACTAAGTAAGTTAACGTAGAATGGCAAAGGAATGTTT-TTCCAAGGAAGAAATTCAAG-GGAAGGAA-GAAAGTGGAGGGGAAGgtagcagttctcaaag-ttttggggtcaggattcctttacactcttaaaaatatattgagggcccaaggagctttt
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       298902 349 +   4111199 CTTGTCCCTGTGATTCCAGATCTCCTAGAAAGAGAG--GTCTAGTCTCAGGGAAAACCCAGATTTGCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATGGGGTGGGCTGGTAGAGTCCTTTGCTCAGGTTTT-GTGTTGAGAGA--GAGGTGGAAAGATGGGAAGGAGGTAGCAAAACTGGCCTCAATGGAACTATGTAAGTTAATATAGAATGGCAAAGGGATGTTTCTTCCCAGGAAGAAATTCTag-ggaagcaaggaaagtggaagggaaggcagcagttctcaaag-ttttggggtcaggattcctttacactcttaaaaatatattgagggtccaaggagctttg
i colAng1.NW_012116021v1    C 0 C 0
s cebCap1.NW_016107979v1       272789 345 -   1024465 CTTGTCCCTGTGATTCCAGATCTCCTAGAAAGAG--------AGCCTTAGGGAAAACTCAGATTTTCTTTGTTTAGCCCACCTGATAGCTAATCTCTGGAAATGGGGTATGCTGGTAGAGTCCTTTGGTCAGATTTT-GTGTCAAGAGAGGGAGGTGGAAGGATGGGAGGGAGGTAGCAAAACTGGCCTCAATGGAACTGTATAAATTAATATAAAATGGCAAAGGGATATTTCTTCCACGGAAGAAATACTag-ggaaggaaggaaagtggaggggaaggcagaagttcttaaac-ttttagtgtctggactcctttacactcttaaaaatatattgagggcccaaggagctttt
i cebCap1.NW_016107979v1    I 454 I 3695
s otoGar3.GL873530            6743884 342 -  36342412 ATTATCCTTGAGACTCCAGGTCTCCCAGAAAGAGAGCTCTCTAGCCTCAAGAAAGGCCTGAATTTTCCTGGCTTAGTCCACCTGACAGATA--------AGGTGGAGTGGGCTGTCAG--TCTTTTGGTCAGGTGTTAATGTCATGGGAGGGAAGGAAAAAGATGGGATGGAGGTAGCAAAACTAGTCCCAGTGGAGCTACAAAGGTTCGTAAAGAATGATAAAAGGATGTTTCTTCCAAGGAAGAAATTCTAGTTGAGGGGA-GAAAATAGAGGGAAAGGcagcagttcgcaaagtttttgaagtcagggttcctttacactc---aaaatatattgaggtttcaaggagccttt
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             485959 5917 -   3282555 I

a score=387724.000000
s hg38.chr15_KI270850v1_alt     85350 292 +    430880 gtgtatgtgggttatatctattggtatttatcactagaaattaaatcagaaatacttaaaatattcctt-aaAAGCTCAC--AAAATATTGTTATAAATGCTTTTATGATAAGAAAA-----TTTCTAAACCCAA----------------GGTAGTACAGTCTTACATCTTTTGCAAATTTCTTTGATGTTTGATATGTCATTTGTACCTGCATTCAATTTATTGTGTGATATTTGCTTG-AAAAAATGTGAACAAAGGACAGTCTCATACA---------------------------GATAGGCATTTCAGATCATTGTGGATATTTCTTTTTTCtttctt
s gorGor5.CYUI01015946v1         8558 292 -    378907 gtttatgtaggttatatctattggtatttatcactagaaattaaatcagaaatacttaaaatattcctt-aaAAGCTCAC--AAAATATTGTTATAAATGCTTTTATGATAAGAAAA-----TTTCTAAACCCAA----------------GGTAGTACAGTCTTACATCTTTTGCAAATTTCTTTGATGTTTGATATGTCATTTGTACCTGCATTCAATTTATTGTGTGATATTTGCTTG-AAAAAATGTGAACAAAGGACAGTCTCATACA---------------------------GATAGGCATTTCAGATCATTATGGATATTTCttttttctttctt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126950 273 + 121039945 ctgtatataggttatatctattggtatttatcattagaaattaaatcagaaatacttaaaatattcctt-aagagctcac--caaatattgttataaatgcttttatgaaaagaaaa-----tttctaaacccaa----------------agtagtacaatcttacatcttttgcaaatttctttgatgtttgatatgtcgtttgcacctgcattcaatttattgtgtgatatttgcttg-aaaaaatgtgaacaaaggacagtctcataca---------------------------gataGCCATTTTAGATCATTATGGA-------------------
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65243715 286 + 171882078 gtgtatgtaggtgatatctactggtatttatcactagaaattaaatcagaaatattcaaaatattcttt-aaaggttcac--caaatattgttataaatgcttttatgaaaagaaaa-----tttctaaacccaa----------------agtagtacaatctta-atcttttgcaaatttctttggtgtttggtatgtcatttgtgtctgcattcaatttattgtgtgatatttgcttgaaaaaaatttgaacaaaggccaatgtcataca---------------------------gataGCCATTTTAGATCATTGTGGATAtttctttttct------
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3819315 286 +  24206276 ctgtatgtaggtgatatctactggtatttatcactagaaattaaatcagaaatattcaaaatattcttt-aaaggttcac--caaatattgttataaatgcttttatgaaaagaaaa-----tttctaaacccaa----------------agtagtacaatctta-atcttttgcaaatttctttggtgtttggtatgtcatttgtgtctgcattcaatttattgtgtgatatttgcttgaaaaaaatttgaacaaaggccagtgtcataca---------------------------gaTAGCCATTTTAGATCATTGTGGAtatttctttttct------
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       299251 285 +   4111199 gtttatatagggcatatctattggtatttatcactagaaattaaatcagaaatatttaaaatattcttt-aaaagctcac--cacatattgttataaatgcttttatgaaaagaaaa-----tttctaaacccaa----------------agtagtacagtcttgcatcttttgcaaatttctttgatgtttgatatgccatttgtgtctgcattcaatttattgtgtgatatttgcttg-aaaaaatgtgaacaaaggccaatctcataca---------------------------gctagccattttagatcattgtggatgtatatgtata-------
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530            6744226 328 -  36342412 gtttatataggttttatctgttgatatttatcatt------------agaaatatttagaacattcattaaaaaacttactacatatattattataaatggctttatgaagagtaaccatattttctaaagtaaaagaattcagtgagagtagtaggacagtcttaacatttttgcagatctctttgatatttggtctgtcatcta---ctgcattcaatttgttttgtgttttttggttg-aaataatgtaaacaaaatccagtctcccagatatctggttcaaaaaaaggaatattttaatagcagttttcgataactgtggatattccttgatactccatt
i otoGar3.GL873530          C 0 I 680
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       273134 3695 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             485959 5917 -   3282555 I

a score=218911.000000
s hg38.chr15_KI270850v1_alt     85642 203 +    430880 tctttctttttttttttttttt-----gagatggggtctttctctgtctcccaggctggaatgcagtgctatgatcacggctcactggagcctcattctctggggactcaggtgatcctcccacc-------tcagcctctagagtagctgggactacaggtgtgtactaccccaccttgctaattttttgta-ttttttgtagagatagggtttt
s gorGor5.CYUI01015946v1         8850 208 -    378907 tctttttttttttttttttttttttttgagatggggtctttctctgtctcccaggctggaatgcagtgctatgatcacggctcactggagcctcattctctggggactcaggtgatcctcccacc-------tcagcctccagagtagctgggactacaggtgtgtactatcccaccttgctaattttttgta-tttttggtagagatagggtttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127223 201 + 121039945 ---------tttttattttttt-----gagatggggtcttgctctgtctcccaggctggaatgcagtgctatgatcacagctcactggagcctcattctctggggaatcaggtgctcctcccaccccagcctccagcctccagagtagctgggacaacaggtgtgtactaccccacctagctaattttttgta-ttttttgtagagacaaggtttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65244001 194 + 171882078 ---------ttttctttttttt-----gagatggggttttgctctgttgcccaggctggaatgcagtggtatggtcatggatcactggagcctcagtctctggggactcaggtgatcctcccacc-------ttagcctccacagtagttgggactacaggtgtgtgctaccacacctagctacttttttgta-tttttcgtagagacagggtttt
i macFas5.chr7              C 0 I 4107
s chlSab2.chr29               3819601 194 +  24206276 ---------ttttctttttttt-----gagatggggtcttgctctgttgcccaggctagaatgcagtggtatggtcatggatcactggagcctcagtctctggggactcaggtgatcctcccacc-------ttagcctccacagtagttgggactacaggtgtgtactaccacacctagctatttttttgta-tttttcatagagacagggtttt
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       299536 189 +   4111199 ---------------tattttt-----gagatggagtcttgccctgtcgcccagtctagaatgcagtggtgtgatcatggctcactgcagcctcagtctccggggacttgggtgatcctcccacc-------tcagcctccagagtagttgggactacaggtgtgtaccaccacacctggctaactttttgtatttttttgtagagacagggtttt
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       273134 3695 -   1024465 I
e otoGar3.GL873530            6744554 680 -  36342412 I
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             485959 5917 -   3282555 I

a score=6663.000000
s hg38.chr15_KI270850v1_alt     85845 5 +    430880 gccat
s gorGor5.CYUI01015946v1         9058 5 -    378907 gccat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127424 5 + 121039945 gccat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106509032 5 - 171882078 GTCAA
i macFas5.chr7              I 87 C 0
s chlSab2.chr29               3819795 5 +  24206276 gccat
i chlSab2.chr29             C 0 I 3829
s colAng1.NW_012116021v1       299725 5 +   4111199 gccat
i colAng1.NW_012116021v1    C 0 I 4418
s saiBol1.JH378276             491876 5 -   3282555 GTCAA
i saiBol1.JH378276          I 5917 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       273134 3695 -   1024465 I
e otoGar3.GL873530            6744554 680 -  36342412 I
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=5325.000000
s hg38.chr15_KI270850v1_alt     85850 3 +    430880 AGG
s gorGor5.CYUI01015946v1         9063 3 -    378907 AGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127429 3 + 121039945 AGG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106509037 3 - 171882078 AGG
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       304148 3 +   4111199 AGG
i colAng1.NW_012116021v1    I 4418 C 0
s saiBol1.JH378276             491881 3 -   3282555 AGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       276829 3 -   1024465 AGG
i cebCap1.NW_016107979v1    I 3695 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e otoGar3.GL873530            6744554 680 -  36342412 I
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               3819800 3829 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=105021.000000
s hg38.chr15_KI270850v1_alt     85853 57 +    430880 TATTCAAATAGAAAGTTTTGTTTTTGT-TTTAGTATATAAAGAAATATAACTTTCCAT
s gorGor5.CYUI01015946v1         9066 57 -    378907 TATTCAAATAGAAAGTTTTGTTTTTGT-TTTAGTATATAAAGAAATATAACTTTCCAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127432 37 + 121039945 TATTCAAATAGAAAGTTTTGTTTTTGT-TTTAGTATAT--------------------
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106509040 58 - 171882078 TATTCAAATAGGAAGTTTTGTTTTTATCTTTAGTATATAAAGAAGTATAACTTCCCAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3823629 58 +  24206276 TATTCAAATAGAAAGTTTTGTTTTTGTTTTTAGTATATAAAGAAATATAACTTTCCAT
i chlSab2.chr29             I 3829 C 0
s colAng1.NW_012116021v1       304151 58 +   4111199 TATTCAAATAGGAAGTTTTGTTTTTTTCTTTAGTATATAAAGAAGTATAACTTCCCAT
i colAng1.NW_012116021v1    C 0 T 60142
s saiBol1.JH378276             491884 58 -   3282555 TATTCAAATACAAAGTTTTATTTTTGTTTTTAGTATTTAAAGAAATACAAGTTTCCAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       276832 58 -   1024465 TATTCAAATACAAAGTTTTATTTTTGTTTTTAGTATTTAAAGAAATACAAGTTTCCAT
i cebCap1.NW_016107979v1    C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e otoGar3.GL873530            6744554 680 -  36342412 I
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=310825.000000
s hg38.chr15_KI270850v1_alt     85910 243 +    430880 GTTGGAAAAATTTTTAAAACCttttt----ttaattttaaaactcataagcaacc--------------attgt---tgagaaaattggtaaagtacagaaaagataaaagaaaaaa-attaaagtctcccataatttctctatctaatataaccactattgactgttgacatgatggtcattttctaccagtatata-tttt-ttctttgctattaaaatacata-acccttacacatatgcttaa-tagttgaggtcatattctcta
s gorGor5.CYUI01015946v1         9123 243 -    378907 GTTGGAAAAATTTTTAAAACCttttt----ttaattataaaactcataagcaacc--------------attgt---tgagaaaattggtaaagtacagaaaagataaaagaaaaaa--ttaaagtctcccataatttctctatctaatataaccactattgactgttgacatgatggccattttctaccagtatata-tttt-ttctttgctattaaaatacata-acccttacacatatgtttaaatagttgaggtcatattcccta
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127469 238 + 121039945 -----AAAAACTTTAAAAACCttttt----ttaattataaaactcataagcaacc--------------attgt---tgagaaaattagtaaagtacagaaaagagaaaagaaaaaa-attaaagtctcccataatttctctacctaatataaccacta-tgacagttgacctgatggccattttctaccagtgtata-tttt-ttctttgctagtaaaatgcata-acccttatacatgtgtttaaatagttgaggtcatattctcta
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106509098 229 - 171882078 TTTGCAAAAACTTTAGAAACCttttttttcttgattataaaacttgtaaagaacc--------------attat---tgagaccagtagtaaaatata-------------aaaaaa--ttaaaatctcacataatttctctacctaatataaccact-------gttgacatgatggctagtttctatcagtatgta-ttttgttttttgttatcaaagtacatatacccttacagatatttttaaatagttgaggtcatattctata
i macFas5.chr7              C 0 I 18636
s chlSab2.chr29               3823687 258 +  24206276 GTTGGAAAAATTTTAAAAACCTTTTTT---TAAAATCTAAAACTCATAAGCAACTTCATAATTCTCATAATTAC---taagaaaattagtaaagtacagaaaagaaaaaagaaaaaa--ttcaaatctcccataatttctctacctaatataaccactattgacagttgacatcatggcctttttctaccagtatata-tttt-ttctttgctagtaaaatacata-acccttatacatatgtttcaatagttgaggtcatattctcta
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276             491942 243 -   3282555 TTTGCACAAATTTTTAAAA-CGttttttc-ttgattataaaactc--gtgcaacc--------------attgtaaaaaaaaaaatgagtaaactatagaaaggaaaaaagaaagaaaattaaagtctcccgtaatttctctacctagtacaaccact-------gttgacatgatggctgttttctaccagtatatattttt-ttctttgctagtaaaatacatacacatttgtacatatgtttaaatagttgaggtcatattctata
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       276890 242 -   1024465 TTTGCAAAAATTTTTAAAACCtttttttc-ttgattataaaactcatgtgcaacc--------------attgt---gaagaaaatgagtaaactgtagaaaggaaaaaagaaagaaaattaaaatctcccataatttctctacctaacacaaccact-------gttgacatgatggctgttttctaccagtatata-tttt-ttctttgctagtaaaatacatacacctttatacatatgtttaaatagttgaggtcatattctata
i cebCap1.NW_016107979v1    C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e otoGar3.GL873530            6744554 680 -  36342412 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=14150.000000
s hg38.chr15_KI270850v1_alt     86153 11 +    430880 tagttt--------------tatat
s gorGor5.CYUI01015946v1         9366 11 -    378907 tagttt--------------tatat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127707 11 + 121039945 tagttt--------------tatat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65248302 25 + 171882078 aagTTTTTAatatatatatatatat
i macFas5.chr7              I 4107 C 0
s chlSab2.chr29               3823945 11 +  24206276 aagttt--------------taTAT
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276             492185 11 -   3282555 tagttt--------------tatat
i saiBol1.JH378276          C 0 I 314
s cebCap1.NW_016107979v1       277132 11 -   1024465 tagttt--------------tatat
i cebCap1.NW_016107979v1    C 0 I 1706
e calJac3.chr10             113951365 89514 - 132174527 T
e otoGar3.GL873530            6744554 680 -  36342412 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=0.000000
s hg38.chr15_KI270850v1_alt     86164 18 +    430880 atatatatatatatatat
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       277143 1706 -   1024465 I
e otoGar3.GL873530            6744554 680 -  36342412 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e chlSab2.chr29               3823956  0 +  24206276 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65248327  0 + 171882078 C
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102127718  0 + 121039945 C
e saiBol1.JH378276             492196 314 -   3282555 I
e gorGor5.CYUI01015946v1         9377  0 -    378907 C

a score=2847.000000
s hg38.chr15_KI270850v1_alt     86182 23 +    430880 ttttttttttttttttttttttt-
s gorGor5.CYUI01015946v1         9377 23 -    378907 tcttttttttttttttttttttt-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127718 12 + 121039945 -----------tctttttttttt-
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65248327 13 + 171882078 ----------atatatatatttt-
i macFas5.chr7              C 0 I 2
s chlSab2.chr29               3823956 13 +  24206276 ----------ATATATATAtttt-
i chlSab2.chr29             C 0 C 0
s otoGar3.GL873530            6745234 23 -  36342412 -TTCTTTTttttcttcttcttttt
i otoGar3.GL873530          I 680 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       277143 1706 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012099388v1       169249 37769 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             492196 314 -   3282555 I

a score=235363.000000
s hg38.chr15_KI270850v1_alt     86205 161 +    430880 ttttgagacagagtcttgctctgtcacccaggctggagtgcagtgccgtggtctcggctcactgcaagctccacctcctgggttcccaccattctcctgcctcagcctccccagtagctgggactacaggcgcccgccaccattcccggctaattttttgt
s gorGor5.CYUI01015946v1         9400 161 -    378907 ttttgagacagagtctcggtctgtcacccaggctggagtgcagtgccgcgatctcggctcactggaagctccacctcctgggttcccaccattctcctgcctcagcctccccagtagctgggactacaggcgcccgccaccattcccggctaattttttgt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127730 161 + 121039945 ttttgagacagagtctctctctgtcacccaggctggagtgcagtggcatgatctcagctcactgcaagctccacctcctgggttcacaccattctcctgcctcagcctccccagtagctgggactacaggcgcccgccaccatgcccggataactttctgt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65248342 161 + 171882078 tttcgagatggagtcttgctctgttgccaaggctggagtgcagtggtgcaatctggactcactgcaagctccacctcctgggttcacaccattctcctgcctcagcctccccagtagctgggactgcaggtgcccaccaccatactcggctaattttttgt
i macFas5.chr7              I 2 C 0
s chlSab2.chr29               3823969 161 +  24206276 tttcgagatagagtcttgctctgttgcccaggctggagtgcagtggtgcaatctcgactcactgcaagctccacctcctgggttcacaccattctcctgcctcagcctccccagtagctgggattgcaggtgcccaccaccatacccggctaattttttgt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       281872 160 -   1458659 ttttaagacgaagtcttgctctgttgcccaggctggagtgcagtggcatgatctgcgctcactacaagctccgcctcccgggttcacatcattctcctgcctcagcctccccagtagctgggactacaggtgcccaccaccatgcccagctaa-tttttgt
i manLeu1.NW_012105520v1    n 37769 C 0
s otoGar3.GL873530            6745257 155 -  36342412 ttttgagacagagtctc---ttgttgcccttggtagagtgctgtggtg---tcacagttcacagcaacctcaaactcttgggcttaagtgatactcttgccacagcctcccaagtaggtgggactacaggtacctgccacaacacccagctatttttttgt
i otoGar3.GL873530          C 0 I 5240
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       277143 1706 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             492196 314 -   3282555 I

a score=157797.000000
s hg38.chr15_KI270850v1_alt     86366 133 +    430880 attttttagtagagatggggttccaccgtgttagccaggatggtctcgatctcctgacctcatggtctgcccaccttggcctcccaaagtgctgggattacaggcgtgagccactgtgcctggccCTTTTATA
s gorGor5.CYUI01015946v1         9561 133 -    378907 attttttagtagagatggggtttcaccgtgttagccaggatggtctggatctcctgacctcatggtctgcccaccttggcctcccaaagtgctgggattacaggcgtgagccactgtgcctggcccttttata
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127891 133 + 121039945 attttttagtagaggtggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccgcccaccctggccttccaaaatgctgggattacaggtgtgagccactgcgcctggcTGTCTTATA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65248503 132 + 171882078 attttttaatagagacggggtttcaccatgttagccaggatggtctcgacctcctgacctcgtgatctgcccgcctcggcctcccaaagtgctggcatcataggc-tgagccactgcacccggcccttttata
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3824130 133 +  24206276 attttttaatagagacggggtttcaccatgttagccaggatggtctcgacctcctgacctcgtgatctgcccgcctcggcctcccaaagtgctgggattataggcatgagccactgcacccagccCTTTTATA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282032 133 -   1458659 attttttagtagagatgagggttcaccattttagtcaggatggtctcgatctcctgatctcatgttctgcctgcctcggcctcccaaagtgctgggattacaggtgtcagccactgtgcccggccCTTTTATA
i manLeu1.NW_012105520v1    C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       277143 1706 -   1024465 I
e otoGar3.GL873530            6745412 5240 -  36342412 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             492196 314 -   3282555 I

a score=15372.000000
s hg38.chr15_KI270850v1_alt     86499 9 +    430880 TTCTTTTAA
s gorGor5.CYUI01015946v1         9694 9 -    378907 ttcttttaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128024 9 + 121039945 TTCTTTTAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65248635 9 + 171882078 ttctTTTAA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3824263 9 +  24206276 TTCTTTTAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282165 9 -   1458659 TTCTTTTAA
i manLeu1.NW_012105520v1    C 0 C 0
s otoGar3.GL873530            6750652 9 -  36342412 TTATCTTAA
i otoGar3.GL873530          I 5240 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       277143 1706 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             492196 314 -   3282555 I

a score=810461.000000
s hg38.chr15_KI270850v1_alt     86508 442 +    430880 AAAGTAT----TTACTGTATTTTCCTGTGATGTCAT--AGTCTTTATAGAaaaat---aatcattattttcagttgacatgattgtttac-ctaaaaat----atccaaaggaaccaactgagaaaaaacaatttttaagattactggttaaaagttcttttatataaaaatcaatagccttccccaatgttagctataatcacatagaagatatagtgat-gaagtat---------tttttcaggtatttcagcaaaaattaaatgcctaggaataaactt-agatgtgcaggacttttatcaaggacaggacaaaattttgctgagtggaatgaaagatttgcattctatgttcctggatgagcagatttcatgttataaatatgttagttatcaccaTGTCTTCATATTAATTTGTAAA---TGTAATT--------------------------------------------TCT------------------------------------------gctgggcacagtggctcatacctgtaatccaaac
s gorGor5.CYUI01015946v1         9703 441 -    378907 aaagtat----ttactgtattttcctgtgatgtcat--agtctttatagaaaaat---aatcattattttcagttgacatgattgtttac-ctaaaaat----atccaaaggaaccaactgagaaaaa-caatttttaagattactggttaaaagttcttttatataaaaatcaatagccttccccaatgttagctataatcacatagaagatatagtgat-gaagtat---------tttttcaggtatttcagaaaaaattaaatacctaggaataaactt-agatgtgcaggacttttatcaaggacaggacaaaattttgctgagtggaatgaaagatttgcattctatgttcctggatgagcagatttcatgttataaatatgtgagttatcaccaTGTCTTCATATTAATTTGTAAA---TGTAATT--------------------------------------------TCT------------------------------------------gctgggcacagtggctcatacctgtaatccaaac
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128033 437 + 121039945 AAAGTAT----TTACTGTATTTTCCCATGATGTCAT--AGTCTTTATagaaaaataacaatcattattttcagttgacgtgattgtttac-ctaaaaat----agcc-aaggaaccaactgaaaaaaa----tttttaagattactggttaaaagttcttttatataaaaatcaatagccttccccaatgttagctataatcacatagaagatataatgat-gaagtat---------tttttcaggtatttcagcaaaaattaaatacctaggaataaactt-agatgtgcaggacttttatcaaggacatgacaaaattttgctgagaggaatgaaagatttgcattctatgttcctggatgagcagatttcatgttataaatacgttagttatcaccaTGTCTTCATAT---TTTATAAA---TGTAATT--------------------------------------------TCT------------------------------------------gctgggcacggtggctcatacgtgttatccgaag
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65248644 444 + 171882078 GAAGTAT----TTACTGTATTTTCCCATGATGTCAT--AGTCTTTAaagaaaaataacaatcattattttcagttgacgtgattgtttac-ctaaaaat----atccaaaggaactaactgaaaaaaa-caatatttaagattactggttaaaagctcttttatataaaaatcattagccttccccaatgttggctataatcacttagaagatatagtgat-gaagtat---------tttttcatgtatttcagcaaaaattaaatatctaggaataaactt-agatgtgcaggacttttatcaaggacatgacaaaattttgctgagtggaatgaaagatttgcattctatgttcctggatgagcagatttcatgttataaatatgttagttatcaacatgtcttcatattaatttataaa---tgtaatT--------------------------------------------TCT------------------------------------------gctgggcacagtggctcatacctgtaatcccgaa
i macFas5.chr7              C 0 I 7673
s chlSab2.chr29               3824272 444 +  24206276 GAAGTAT----TTACTGTATTTTCCCATGATGTCAT--AGTCTTTatagaaaaataacaatcattattttcagttgacgtgattgtttac-ctaaaaat----atccaaaggaactaactgaaaaaaa-caatttttaagattactggttaaaagctcttttatataaaaatcattagccttccccaatgttggctaaaatcacatagaagatatagtgat-gaagtat---------tttttcatgtatttcagcaaaaattaaatatctaggaataaactt-agatgtgcaggacttttatcaaggacatgacaaaattttgctgagtggaatgaaagatttgcattctatgttcctggatgagcagatttcatgttataaatatgttagttatcaccatgtcttcatattaatttataaa---tgtaATT--------------------------------------------Tct------------------------------------------gctgggcacagtggctcatacctgtaatcccaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282174 451 -   1458659 AAAGTAT----TTACTGTATTTCCTCATGATGTCAT--AGTCTTTATATaaaaataacaatcattatttttagttgacatgattgtttac-ctgaaaat----atccaaaggaaccaactg-aaaaaa-caatttttaagattagtggctaaaagctc-tttatataaaaatcaatatccttccccaatgctagctataatcacatagaagatatagtggt-gcagtattttttcaggtttttcaggtgtttcagcaaaaattaaatatctaggaataaactt-agatgtgcaggacttttatcaaggacatgacaaaattttgctgagtgaaatgaaagatttgcattctatgttcctggatgagcagatttcatgctataaatatgttagttatcaccaTGTCTTCATATTAATTTATAAA---TGTAATT--------------------------------------------TCT------------------------------------------gctgggcacagtggctcatacctgtaatcccaaa
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276             492510 440 -   3282555 aaaaaaa----TTACTGTATTTTCCCATGATAACAA--AGTCTTTATagaaaaataaccatcattattttcagctgacatgattgtttac-ctaaaaat----attcagaggaaccaactcaaaaaaa-aagttcttaagattaccagttaaaagctg-ttaacataaaaatcagaagcattccacaattttagctataatcacacagaagatatagggat-aaagtatt--------tttttcaagtattttaacaaaaattacatacctaggaataaacttaagatgtgcaggacttttgtcaagaacaggat--gattttgctgagtggaatgaaagatttgcattctatgttcctggatgagcagatttaataatataaatatatcagttatcacgatgtctttata----ttcataaac--tgtaatt--------------------------------------------tct------------------------------------------gctgggcgcagtggctcatgcctgtaattccata
i saiBol1.JH378276          I 314 C 0
s otoGar3.GL873530            6750661 516 -  36342412 GAAATTTAACATTATTGTATTTCCC----ATGTCACAAAGGTCCTGTCaaaaaattaaaataattatttCCAGGTGACATGATTGTTCATACTAAAAAGAAAAATCCCAAGGAACCAACTGAAAAAGT--------GAAGATGACTTG-TAAAAGCTCTGTTATATACGAATCAGCAGTTTTCCCAAATTTCAGCTATAATC----AGATGATATAGTGATAAAAGTAT---------TTTATTGACAGTCACAATAAAA-----ATAGCCAGAAAT-------agatgtgctgggtttatatcaggaaaactatgaaaattttctaagtggaatgaaagacttgaatactgtgttccgagatgggcgaactccatat--taaacatatcagttatcttcatgtcttcatattaatttataaatagtgcaattctagtacaaattccaccagacttatttttggaactcgaaatgactctaaaatttGCTTAAAAGAGTAAATAAAAAATAAAATGGAAAAggctgggcacagtagttcatgcctgtaatcctagc
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       277143 1706 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=305845.000000
s hg38.chr15_KI270850v1_alt     86950 224 +    430880 agtttgggaagctgaggcgggtagatgac-----------------------------------------------------------------------------------aattagctgggtgtctgtggcacacacttgtatttccaactacttctgaggctgaggtgggaggagcacttgagcctgggaggcagaggttgcagtgagccgagatcatgcctctgaactccagcctaggtgacagagtgagaccctgtct-----caaaaaaaaaaaaaaaaaa------------aaA--AACTAGAA--------AAGTGTGTGTGta---t
s gorGor5.CYUI01015946v1        10144 222 -    378907 agtttgggaagcagaggcgggtagatgac-----------------------------------------------------------------------------------aattagctgggtgtctgtggcacacacttgtatttccaactacttctgaggctgaggtgggaggagcacttgagcctgggaggcagaggttgcagtgagctgagatcatgcctctgaactccagcctaggtgacagagtgagaccctgtct-----caaaaaaaaaaaaaaaaac------------aaA----CTAGAA--------AAGTGTGTGTGta---t
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128470 226 + 121039945 agtttgggaagctgaggagggtagatgac-----------------------------------------------------------------------------------aattaactgggtgtctgtggcacacacttgtagttccaaccactcctgaggctaaggcgggaggatcccttgagcctgggaggcagaggttgcagtgagccgagatcattcctctgaactccagcctaggtgacagagtaagaccctgtct-----caaaaaaaaaaaaaaaaaa------------aaagaaaagaaaa--------aaaaGCGTGTGta---t
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65256761 210 + 171882078 AGTTTGGGAAGCTGAGGTGAGTAGATGAC-----------------------------------------------------------------------------------aattagctgggtgtctgtggcacacacctgtagttccaactactcctgaggttgaggcaggaggatctcttgagcctggaaggcagaggttgcagtgagccgagatcatgcctctgaactccagcctacatgacagagtgagatcctgtct-----caaaaaaaa----------------------aaa------aaaa--------aaGTGTGTGTGTG---t
i macFas5.chr7              I 7673 C 0
s chlSab2.chr29               3824716 213 +  24206276 agtttgggaagctgaggtgagtagatgac-----------------------------------------------------------------------------------aattaactgggtgtctgtggcacacacctgtagttccaactactcctgaggttgaggcaggaggatcacttgagcctgggaggcagaggttgcagtgagccgagatcatgcctctgaactccagcctacatgacagagtgagaccctgtct-----caaaaaaaaa---------------------aaa------aaaa--------AAGTGTGTGtgta-tat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282625 209 -   1458659 agtttgggaagctgaggtgagtagatgac-----------------------------------------------------------------------------------aattagctgcgtgtctgtggcacacacttgtagttccaactactcctgaggctgaggcaggaggatcacatgaacctgggaggcagaggttgcagtgagctaag--------------------------tgacagagtgagatcgtgtct-----ccaaaaaaaaaaaaaaaaaaaAAAGAGAGAGAAA------AAAA--------AAGTGTGtatatatttt
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276             492950 288 -   3282555 actttgggaagctgaggtgggcaggtcacttgagctcatgagttcaagaccagtctgggcaacatggtgaaaccctgtgtcaaaaaaaaaaaaaaaaataaaaaaaaaaaaaaatgagatgggtgt-ggtggcacatatttgtaatgccagctactcaggaggctgaggtttgaggatcacttgagcctgggaggcagagcttgcactaagtctagattgtgcctctgaactccagcctaggtgacagagtgagaccttgtct-----caaaaaaaaccccaaaaac------------caa------aaaa-------------------------
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6751177 282 -  36342412 actctgggaggcctcagcagatggattgcctgagctcagaagtttgaaaccagcctgagccagagtgagactttgtctctaa------------------------------aaatagctgggcgt-tgtggtgggtacctatagtcctagctactttggaggctgaggcaagaggattgcttgagtctaagagttggaggttgctatgagctaag---acaccatggcactctactgagggcaacaaagtgacactctgtctccccccaaaaaaagtttaaaaaaa------------GTA------AGAGACTTGCTCAAGCAGATGTGTA---C
i otoGar3.GL873530          C 0 I 252
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       277143 1706 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=165766.000000
s hg38.chr15_KI270850v1_alt     87174 205 +    430880 atatatatatttcatattttataaatatttatatatataaattgtatatatacattttatattttatatatagtgtgtgtgtattatatatatataCACACACACACAAATTTCAGTACAAATTCTGGCAGATTTATTTTTGACACTTGACAAAACGACTCTAAAATTTGTTTAGAAGAATAAGTAATAAAAATTAATAAAGTAT
s gorGor5.CYUI01015946v1        10366 191 -    378907 atatatatatttcatattttataaatat------atataaattgtatatatacattttatattttatatatagt-------tat-atatatatataCACACACACACAAATTTCAGTACAAATTCTGGCAGATTTATTTTTGACACTTGACAAAACGACTCTAAAATTTGTTTAGAAGAATAAACAATAATAATTAATAAAGTAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128696 162 + 121039945 atatacacattttatattttatatatat------at-----ttatatatataaattttgtatg------------------tat-gtgtatatat----------aCAaatctcagtagaaattccagcagatttatttttggcacttgccaaaatgactctaaaat---tttagaagagtaaataataaaaaataataaagTAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65256971 164 + 171882078 atatatattttttatattttatatctat-------------tcatatatatatattgtgtgtg------------------tat-atatatatat------aCACACACAATT---TACaaattccagcagatttatttttggcacttgacaaaatgactctaaagtttgtttagaagagtaaaTAATAAAAAATAATAAAGTAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3824929 160 +  24206276 atatatatattttatattttatatctat-------------tcatatatatata----gtgtg------------------tgt-atatataTAC------ACACACAAAATT---TacaaattccagcagatttatttttggcacttgacaaaatgactctaaagtttgtttagaagagtaAATAATAAAAAATAATAAAGTAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282834 155 -   1458659 atatatata---cacattttgtgtgtgt-------------gtgtgtatatata---------------------------tat-atatatacat------acataCAaatttcagtacaaattccagcagatttatttttggcacttgacaaaacaattctaaaatttgtttagaagagtaaataataaaaaataatcaagTAT
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276             493238 113 -   3282555 ---------------------------c-----------------------------------------------------cat-atatgtaaa-----------ataaatttcagtacaaagcctagcagatttatttctggaacttgacaaagtgacttgaacgtttgtttaaaaaaataaataataaaaaataataaagaAT
i saiBol1.JH378276          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       277143 1706 -   1024465 I
e otoGar3.GL873530            6751459 252 -  36342412 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=502103.000000
s hg38.chr15_KI270850v1_alt     87379 267 +    430880 AGACTCTTTCAACCAGatagtaaataaaata---------ttgtggactatccctgggccagacagataaaggcaatggaagtttagaaccagagtcatgcaaacgagaa--------------------------------------------------------------------------------------------tttagtataaggaaaaggtggtattttaacttaatactgaaaagatagattattctgtaaatggttttaggagaact----atttgaggaagtc-tgagtcttaactcca-atttTTGTCAAAATAAGTTA---GTTGGTTTAAACACATCTATTCTTAAAAATTAGAACAGAAG
s gorGor5.CYUI01015946v1        10557 268 -    378907 AGACTCTTTCAACCAGATAGTAA-TAAAATA---------TTGTGGACTATCCCTGGGCCAGACAGATAAAGGCAATGGAAGTTTAGAACCAGAGTCATGCAAACGAGAA--------------------------------------------------------------------------------------------TTTAGTATAAGGAAAAGGTGGTATTTTAACTTAATACTGAAAAGATAGATTATTCTGTAAATGATTTTAGGAGAACT----ATTTGAGGAAGTC-TGAGTCTTAACTCCA-ATTTTTGTCAAAATAAGTTACA-GTTGGTTTAAACACATCTATTCTTAAAAATTAGAACAGAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128858 273 + 121039945 AGACTCTTTCAATCAGATATTAAATAAAATA---------TTGTGGACTAGCCCTGGGTCAGACAGATAAAGGCAATGGAAGTTTAAAGCCAGAGTCATGCAAATGAGAA--------------------------------------------------------------------------------------------TTTAGTATAAGGAAAAGGTGGTATTTTAACTTAATAGTGAAAAGACAGATTATTCTGTAAATAGTTTTAGGAGAACTGGCCATTTGAGGAAGTT-TGAGTCTTAACTTCA-ATTTTCGTCAAAATAAGTTGTA-ATTGGTTTAAACACATCTATTCTTAAAAATTAGAACAGAAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65257135 273 + 171882078 AGACTCTTTCAATCAGATATTAAATAAAATA---------TTGTAGACTAGCCCTGGGCCAGACAGATAAAGGCAATGGAAGTTTAGAACCAGAGTCATGCAAATGAGAA--------------------------------------------------------------------------------------------TTTAGTGTAAGGAAAAGGTGGTATTTTAACTTAATAGTGAAAAGATAGATTATTCTGTAAATGGTTTTAGGAAAACTGACAATTTGAGGAAGTT-TGAGTCTTAACTCCA-GTTTTTGTCAAAATAAGTTAGA-GTTGGTTTAAACACATCTATTCTTAAAAATTAGAACAGAAG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3825089 274 +  24206276 AGACTCTTTCAATCAGATATTAAATAAAATA---------TTGTAGACTAGCCCTGGGCCAGACAGATAAAGGCAATGGAAGTTTAGAACCAGAGTCATGCAAATGAGAAT-------------------------------------------------------------------------------------------TTTAGTGTAAGGAAAAGGTAGTATTTTAACTTAACAGTGAAAGGATAGATTATTCTGTAAATAGTTTTATGAGAACTGACCATCTGAGGAAGTT-TGAGTCTTAACTCCA-ATTTTTGTCAAAATAAGTTATA-GTTGGTTTAAACACATCTATTCTTAAAAATTAGAACAGAAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282989 273 -   1458659 AGACTCTTTCAACTAGATATTAAATAAAATA---------TTGTAGACTAGCCCTGGGCCAGACAGATAAAGGCAATGGAAGTTTAGAACCAGAGTCATGCAAATGAGAA--------------------------------------------------------------------------------------------TTTAATATAAGGAAAAGGTGGTATTTTACCTTCATAGTGAAAAGATAGATTATTCTGTTAATAGTTTTAGGAGAACTGGCCATTTGTGGAAGTT-TGAGTCTTAACTTCA-GTTTTTGTCAAAATAAGTTATA-GTTAGTTTAAACACATCTATTCTTAAATATTAGAAGAGAAG
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276             493351 267 -   3282555 AGACTTGTTCAACCAGGTGTTAAATAAAATG---------TTGCGTA----CCCTGGCCCAGACATATACAGGCAATGAAAATTTAGAAACAGAGTCATGCAAATGAGAA--------------------------------------------------------------------------------------------TTTAGTATAAGGTAAAGGTGGTATTTTAACTTAATAAGAAAAGGATAGATTATTCTGTAAATAGTCTTAGGAGAACCGACCATTTGAGGACGTT-TGAGTC--AACTCTG-ATTTTTGTCAAAATAAGTTGCA-GTTGGTTTAAACACATCTAGTTTTAAAAGTAAGAACAGAAg
i saiBol1.JH378276          C 0 I 290
s otoGar3.GL873530            6751711 365 -  36342412 agacggtctcaaaaaaaaaaaaaaaaaaaaAAAGGAAAACTTATGTACTCGTCCTGCACCAGACCAATAAAGGCAATAGAAGTTTAGAACTAGAGTCATGCAAATGAGAATTTAGaacagcggttctcactcaacctgtgggttgcgacccacaggaactgtattaaagggttctggcattaggaaggttgagaaccactgatttaGAATAAAGTAAAGG-GGTATTTTAATTCAAT----AAAGAATAGATTATTCCGTAAATAGTTGGA-GAGCACTGGCCATTTGGGAACGTTAAAAGTCTGAACTCAAGATTTTTGTCAAAATATGTTATAGGTTGTTTTAAACACATCTATTCTTA------AGAACAGAAG
i otoGar3.GL873530          I 252 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       277143 1706 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=13140.000000
s hg38.chr15_KI270850v1_alt     87646 12 +    430880 AATATTGGTTTG
s gorGor5.CYUI01015946v1        10825 12 -    378907 ACTATTGGTTTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129131 12 + 121039945 AACATCGGTCTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65257408 12 + 171882078 AACATCAGTCTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3825363 12 +  24206276 AACATCAGTTTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283262 12 -   1458659 AACTTCAGTTGG
i manLeu1.NW_012105520v1    C 0 C 0
s otoGar3.GL873530            6752076 12 -  36342412 GACATCAATTTG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       277143 1706 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             493618 290 -   3282555 I

a score=13384.000000
s hg38.chr15_KI270850v1_alt     87658 7 +    430880 AAGATAT
s gorGor5.CYUI01015946v1        10837 7 -    378907 AAGATAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129143 7 + 121039945 AAGATAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65257420 7 + 171882078 AAGATAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3825375 7 +  24206276 AAGATAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283274 7 -   1458659 ATGATAT
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276             493908 7 -   3282555 aaGACAC
i saiBol1.JH378276          I 290 C 0
s otoGar3.GL873530            6752088 7 -  36342412 AATATAT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       277143 1706 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=54712.000000
s hg38.chr15_KI270850v1_alt     87665 18 +    430880 TTTAAGAGTTAAGGCTGA
s gorGor5.CYUI01015946v1        10844 18 -    378907 TTTAAGAGTTAAGGCTGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129150 18 + 121039945 TTTAAGAGTTAAGGCTGA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65257427 18 + 171882078 ATTAAGAGTTAAGGATGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3825382 18 +  24206276 TTTAAGAGTTAAGCCTGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283281 18 -   1458659 TTTAAGAGTTAAGGCTGA
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276             493915 18 -   3282555 TTTAAGAGTTAAGGCTGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       278849 18 -   1024465 TTTAAGAGTTAAGGCTGA
i cebCap1.NW_016107979v1    I 1706 C 0
s otoGar3.GL873530            6752095 18 -  36342412 TTTAAGAGTTAAGGCTGG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=249403.000000
s hg38.chr15_KI270850v1_alt     87683 130 +    430880 ggctgggcacagtggttcacgcctgtaatcccagcactttgcgaggccaaggtgggaggattgcttgagcccaggagtttgagatcagcctgggcaacatagcaaga---------------------------ctctttctctCTCTCTCTCTCTC
s gorGor5.CYUI01015946v1        10862 126 -    378907 ggctgggcacagtggttcacgcctgtaatcccagcactttgcgaggccaaggtgggaggattgcttgagcccaggagtttgagatcagcctgggcaacatagcaaga---------------------------ctctttctctCTCTCTCTC----
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129168 123 + 121039945 ggctgggcacagtgattcacacttgtaatcccagcagttt-caaggccaaggtgggaggattgcttgagcccaggagtttgagatcagcctgggcaacatagcaaga---------------------------ctctctctctCTCTCta------
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65257445 145 + 171882078 ggctgggcacagtggttcacgcctttaatcccagcactttgtgaggccaaggtgggaggattgcttgagcccaggagtttgagatcagcctgggcaacatagcaagac--------tctctctctCTCAAGActctctctctctctctctcta----
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3825400 138 +  24206276 ggctgggcacagtggttcatgcctgtaatcccagcactttgcaaggccaaggtggaaggattgcttgagtccaggagtttgagatcagcctgagcaatatagcaagac--------tttctct-------gtctctctctctctctctctcta----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283299 126 -   1458659 ggctgcgcacagtggttcatgcctgtaatcccaggacttttcgaggccaagatgggaggattgcttgagcccaggagtttgagatcagcctgagcaacatagcaaga---------------------------ctctctctctCTCTCTCta----
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276             493933 140 -   3282555 ggctggttgcagtggttcacacctgtaatcccagcactttgggagactgaagtgggagaagtgcttgagcctaggagtttgagatcagcctgggaaatgtagcaagTCAGTCAGtctctctct-----------ctctctctctctctctc------
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       278867 130 -   1024465 ggctggtcgcagtggttcacgcctgtaatcccagcactttgggagactgaagtgggagaagtgcttgagcctgggagtttgagatcagcctgggaaatgtagcaag----------tctctct-----------ctctctctctctctctc------
i cebCap1.NW_016107979v1    C 0 I 59
e calJac3.chr10             113951365 89514 - 132174527 T
e otoGar3.GL873530            6752113   0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=21940.000000
s hg38.chr15_KI270850v1_alt     87813 31 +    430880 ------Gatatagatata----------------------------------------catataaatatacgtatac
s gorGor5.CYUI01015946v1        10988 30 -    378907 ------Gatatagagata----------------------------------------catataa-tatacatatac
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129291 31 + 121039945 ------gatatagatata----------------------------------------catataaatacacatatac
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65257590 71 + 171882078 ------tatatatatatctatatatagagatagatagatagatagatagatagatatacatataaatatacatataC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3825538 55 +  24206276 ------tctatatatatatat----------------gtagacagatagatacatatccatataaatatacatatac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283425 31 -   1458659 ------gatatagatata----------------------------------------catataaatatacatatac
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276             494073 37 -   3282555 tccacacacacacacaca----------------------------------------cacacacacacacacacac
i saiBol1.JH378276          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       278997 59 -   1024465 I
e otoGar3.GL873530            6752113  0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=28947.000000
s hg38.chr15_KI270850v1_alt     87844 29 +    430880 --aaataGAAAAAAAAAAG----AGTTAAGTTTTA
s gorGor5.CYUI01015946v1        11018 27 -    378907 --aaataGAAAAAAAA--G----AGTTAAGTTTTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129322 26 + 121039945 --agatacaAAAAAA---G----AGTTAAGTTTTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65257661 25 + 171882078 --AAA-ACAAAAAAA---A----GGTTAAGTTTTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3825593 26 +  24206276 --aaataCAAAAAAA---A----GGTTAAGTTTTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283456 25 -   1458659 --aagtacaAAAAAG---A-----GTTAAGGTTTG
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276             494110 31 -   3282555 --acacacaAATAAAA--GAGTTAGTTAAGATTCG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       279056 29 -   1024465 ACACACACAAATAAAA--G----AGTTAAGATTTG
i cebCap1.NW_016107979v1    I 59 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e otoGar3.GL873530            6752113  0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=105632.000000
s hg38.chr15_KI270850v1_alt     87873 35 +    430880 TATGGAGAGCCATGAAGATAAGAGGTAAAAATTAA
s gorGor5.CYUI01015946v1        11045 35 -    378907 TATGGAGAGCCATGAAGATAAGAGGTAAAAATTAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129348 35 + 121039945 TATGGAGAGCCATGAAGATAAGAGGTAAAAATTAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65257686 35 + 171882078 TATGGAGAGCCATAAAGATGAGATGTAAAAATTAA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3825619 35 +  24206276 TATGGAGAGCCATAAAGATGAGATGTAAAAATTAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283481 35 -   1458659 TATGGAGAGCCATGAAGATAAGAGGTAAAAATTAA
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276             494141 35 -   3282555 TATGGAGAGCCATGAAGGTAAGAGGTAAAAATTAA
i saiBol1.JH378276          C 0 M 556
s cebCap1.NW_016107979v1       279085 35 -   1024465 TATGGAGAGCCATGAAGGTAAGAGGTAAAAATTAA
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530            6752113 35 -  36342412 CATGGAGAGTCATGAAGGTAAGAAATAAAAATTAA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=439166.000000
s hg38.chr15_KI270850v1_alt     87908 256 +    430880 AGGCTTGATGGACACATGTTTAC--A-TCTCCATCAAGGGGGTTGATGGGAAAGAATGATAGACATAGCTCCATT-ACTGCTACCTCCTTTTAGGAAGTTGCTTCTGAACATCTAAAGATATCAGTTTTATAAT---AGAAATG-----AGTTATTTTTCAGTGTCTAAAACACCacatgagatacatacatacatgcatacatacataaatatgttcataAAGTTAAATGAAATAGGATATAAAATTGGGCCTAGTGTTT-AAAAGGT
s gorGor5.CYUI01015946v1        11080 256 -    378907 AGGCTTGATGGACACATGTTTAC--A-TCTCCAGCAAGGGGGTTGATGGGAAAGACTGATAGACATAGCTCCATT-ACTGCTACCTCCTTTTAGGAAGTTGCTTCTGAACATCTAAAGATATCAGTTTTATAAT---AGAAATG-----AGTTATTTTTCAGTGTCTAAAacatcacatgagatacatacatacatgcatacatacataaatatgttcataAAGTTAAATGAAATAGGATATAAAATTGGGCCTAGTGTTT-AAAAGGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129383 246 + 121039945 AGGCTTGATGGACACATGTTTAC--A-TCTCCAGCAAGGGGATTGAT-GGAAAGAATGATAGACGTAGCTCCATT-ACTGCTACCTCCTTTTAGGAAGTTGCTTCTGAATATCTAAAGATAACAGTTTTATAATAGCAGAAATG-----AGGTTTTTTTCAGTGTCTAAAacattacata------------acatacatacatacataaacataTTCA-AAAGTTAAATGAAGCAGGATATAAAATTGGGCCTAGTGTTTAAAAAAGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65257721 255 + 171882078 AGGCTTGATGGACACATGTTTAC--A-TTTCCAGCAAGGGGGTTGATGGGAAAGAATGATAGACATAGCTCCATT-ACTGCTACCTAGTTTTAGGGAGTTGCTTCTGAACATCTAAAGATAACAGTTTTATAATAGCAGAAATG-----AGTTATTTTTCAGTGTCTAAAacattacata----acatacatatatacatacttacataAACATGTTCGTAAAATT-AATGAAGTTGGGTATAAAATTGGGCCTAGTGTTTAAAAAAGT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3825654 257 +  24206276 AGGCTTGATGGACACATGTTTACAAA-TTTCCAGCAAGGGGGTTGATGGGAAAGAATGATAGACATAGCTCCATT-ACTGCTACCTAGTTTTAGGGAGTTGTTTCTGAACATCTAAAGATAACAGTTTTATAATAGCAGAAATG-----AGTTATTTTTCAGTGTCTAaaacattacata----acatacatatatacatacttacaTAAACATGTTCATAAAATT-AATGAAGTAGGGTATAAAATTGGGCCTAGTGTTTAAAAAAGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283516 251 -   1458659 AGATTTGATGAACACATGTTTAC--A-TCTCCAGCAAGGGGGTTGATGGGAAAGAATGATAGACATAGCTCCATT-ACTGCTACCTCCTTTTAGGGAGTTGCTTCTGAACATCTAAAGATAACAGTTTTATAAGAGCAGAAATG-----AGTTATTTTTCAGTGTCTAAAacattatata----acatacatacataca----tacataAACATGTTCATAAAGTTAAATGAAGTAGGATATAAAATGGGGCCCAGTGTTTAAAAAA-T
i manLeu1.NW_012105520v1    C 0 C 0
s cebCap1.NW_016107979v1       279120 230 -   1024465 AAGCTAGATGGATGAATGTTCAC--A-TATCCAACAAGGGGGTTGATGGGAAAGAATGATAGACATAGCACTGTT-ATTGCTACCTCCTTTTAGGATGTTGTTTCTGAAGATCTAAAGATAACAGTTTTATAATAGCAGAAATG-----AGTTATTTTTCAGTGTCTAAAATATTACATA-----------------------------AATATGTTCATAAGGTTAAATGAAGTAGGATATAAAATCGGGCCTAGTTTTT-AAAAATT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530            6752148 230 -  36342412 AAGCTATACAGACATATGTTCCC--ACTCTCCAGC-AGAGGGATAATGAGAAAGA--GACAGATACGGCGCCATTAACTGCCGTGTCATTTTGGGAGGTCGCCTCTAAAGATCTAAAGACACCAGTTTTAAAATAGCAGAAATGAATCAAATTATTTTTTAGTGTCTAAAATATTATATA-----------------------------AAAAGGCTCTTAAAGTT-----AAATAGGATATAAAATTGGGCCTAACTTTATAAAAGGT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             494176 556 -   3282555 M

a score=792486.000000
s hg38.chr15_KI270850v1_alt     88164 299 +    430880 AAATATATTTACATGAAGGAGAAAACAACTCACCTCCCAC----TCTTAGAGCC-----TCTGCCAGTTTATCATAGCCTAGTTTCTTGAGAGAATAAGCTACATGTCTTCACCTTTTTTCACTGAGCTCATTATACTCTGGATTCTGCCTTCATCGTTGCACTAAAATTTatctcctagttgtcaaatccagtggctcccctcttagtccccaaattgtcccctctgcagtattttgatactgttgattgttcctttgttgaaacattcctcca-----------ttcttaatgtccaccaataaagagttggttaaa
s gorGor5.CYUI01015946v1        11336 299 -    378907 AAATATATTTACATGAAGGAGAAAACAACTCACCTCCCAC----TCTTAGAGCC-----TCTGCCAGTTTATCATAGCCTAGTTTCTTGAGAGAATAAGCTACATGtcttcaccttttttcactgagctcattataatctggattctgccttcatcgttgcactaaaatttatctcctagttgtcaaatccagtggctcccctcttagtccccaaattgacccctctgcagtattttgatactgttgattgttcctttgttgaaacattcctcca-----------ttcttaatgtccaccaataaagagttggttaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129629 298 + 121039945 AAATATATTTACATGAAGGAGAAAACAActcacctcccac----tcttacagcc-----tctgccagtttatcatagcctagtttcttgagagaataagctacatgtcttcaccttttttcactgagctcattataatctggattctgccttcatcattgtgctaaaatttatctcctagttgccaaatccagtgacttccctcttagtccccaaattga-ccctctgcagtattttgatattgttgattgttcccttcttgaaacattcctcca-----------ttcttaatgtccaccagtaaagagttggttaaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65257976 299 + 171882078 AAATATATTTACATGAAGGAGAAAACAACTCACTGCCCAC----TCTTACAGCC-----TCTGCCAGTTTACCGTAGCGTAGTTTCTTAAGAGAATAAGCTATATGTCTTCACCTTTTTTCACTGAACTCATTATAATGTGGATTCTGCCTTCATCATTGTGCTAAAATTTatctcctagttgccaaatccagtggctcccctcttagtccccaaattgacccctctgcagtattctgatactgttgattgttcccttgttgaaacattcctcca-----------ttcttaatatccgccaataaagagctggttaaa
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3825911 299 +  24206276 AAATATATTTACATGAAGGAGAAAATAACTCACTGCCCAC----TCTTACAGCT-----TCTGCCAGTTTACCATAGCGTAGTTTCTTGAGAGAATAAACTACATGTCTTCACCTTTTTTCACTGAGCTCATTATAATCTGGATTCTGCCTTCATCATTGTGCTAAAATTTatcttctagtttccaaatccagtggctcccctcttagtccccaaattgacccctctgcagtattttgatactgttgattgttcccttgttgaaacattcctcca-----------ttcttaatgtccgccaataaagagctggttaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283767 299 -   1458659 AAATATATTTACATGAAGGAGAAAACAACTCACCTCCTAC----TCTTACAGCC-----TCTGCCGGTTTATCATAACCTAGTTTATTGAGAGAATAAGCTACAGGtcttcaccttttctcattgagctcattataatctggattctgccttcatcgttgcgctaaaatttacctcttagttgccaaatctagtggctcccctcttagtccccaaattgacccctctgtagtattttgatactgtggattgttcccttgttgaaacattcctcca-----------ttCTTGatgtccaccaataaagagctggttaaa
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276             494732 298 -   3282555 AAGTATATTTACATGGAGGAGAAAACAACTCACCTCCCAC----TTTTATAGTC-----TCTGCCAATTTATCATAGCCTAGTATCTTGAGAGAATAAGCTATATGTCTTCACCTTTTTTCACTGAACTCATTATAATCTAGACTCTGCCTTCATTCTTGCACTAAaatgtatctcctagttgccaaatccaggggctcctctcttag-ccccaaattgacccctctgcaggattctgatactgttgattgttcccttgttgaaccattcctcca-----------ttcttaatgtgtaccaataaagagttggttaaa
i saiBol1.JH378276          M 556 C 0
s cebCap1.NW_016107979v1       279350 298 -   1024465 AAGTATATTTACATGGAGGAGAAAACAACTCACCTCCCAC----TTCTATAGTC-----TCTGCCAGTTTATCATAGCCTAGTATCTTGAGAGAACAAGCTATATGTATTCACCTTTTTTCACTGAACTCATTATAATCTTGATTCTGCCTTCATTCTTGCACTAAaatgtatctcctagttggcaaatccagtggctcctctctcag-ccccaaattgacccctctgcaggattttgatactgttgattattccctttttgaaacattcctcca-----------ttcttaatgtgtaccaataaagagttggttaaa
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530            6752378 303 -  36342412 AAATATATATGCATTAAGGA-AAAATAGTTCACCTCCTACTGTATCTTATAGCCACCTTTTGGCCAGTTTCTC--AGTCTAGTTTTTTGAGGAAATAATCTATTTATCTTTAA-----TTCACTTAACTCATTATAATCTGGATTCTGCCTTCATTGTTGCATTAAAATTTATCTCTTAGTTGCCAAATCCAGTGGCTTTTTTCTT---TCCAAAATTGACCCCT-TCCAGCCTTTTGACACTGTTGA----TCTCTTGTTGAAATATTTCCCTATCAACAAACATTTATTAATGTTCACTGATAAAGAATTGATTAAA
i otoGar3.GL873530          C 0 I 154
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=63592.000000
s hg38.chr15_KI270850v1_alt     88463 29 +    430880 taaaaattatagtgtaccgttttataata
s gorGor5.CYUI01015946v1        11635 29 -    378907 taaaaattatagtgtaccgttttataata
i gorGor5.CYUI01015946v1    C 0 I 5
s nomLeu3.chr6              102129927 29 + 121039945 taaaaattatagtgtacagttttataata
i nomLeu3.chr6              C 0 I 3
s macFas5.chr7               65258275 29 + 171882078 taaaaattatagtgtacagttttataata
i macFas5.chr7              C 0 I 3
s chlSab2.chr29               3826210 29 +  24206276 taaaaattatagtgtacagttttataata
i chlSab2.chr29             C 0 I 3
s manLeu1.NW_012105520v1       284066 27 -   1458659 taaagattatagtgt--agttttataata
i manLeu1.NW_012105520v1    C 0 I 3
s saiBol1.JH378276             495030 29 -   3282555 taaaaattacagtatacggttttataata
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       279648 29 -   1024465 taaaaattatagtatacggttttataata
i cebCap1.NW_016107979v1    C 0 I 24
e calJac3.chr10             113951365 89514 - 132174527 T
e otoGar3.GL873530            6752681 154 -  36342412 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=16767.000000
s hg38.chr15_KI270850v1_alt     88492 24 +    430880 ttctgttgttctgttgtggacc--aa
s gorGor5.CYUI01015946v1        11669 24 -    378907 ttctgttgttctgttgtggacc--aa
i gorGor5.CYUI01015946v1    I 5 C 0
s nomLeu3.chr6              102129959 20 + 121039945 ------tattctgttgtagaccaaaa
i nomLeu3.chr6              I 3 C 0
s macFas5.chr7               65258307 19 + 171882078 ------tattctgttgtagaac-aaa
i macFas5.chr7              I 3 C 0
s chlSab2.chr29               3826242 19 +  24206276 ------tattctgttgtagacc-aaa
i chlSab2.chr29             I 3 C 0
s manLeu1.NW_012105520v1       284096 18 -   1458659 ------tattctgttgtagacc--aa
i manLeu1.NW_012105520v1    I 3 C 0
s saiBol1.JH378276             495059 20 -   3282555 ---gaatattctgtggaag-cc--aa
i saiBol1.JH378276          C 0 I 4
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       279677 24 -   1024465 I
e otoGar3.GL873530            6752681 154 -  36342412 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=188472.000000
s hg38.chr15_KI270850v1_alt     88516 86 +    430880 aaaatgcagccagtctttccataagagcacgtgcaaacttctaagatatattaagtaaaaaagtaaggcataaaatattgtgtata
s gorGor5.CYUI01015946v1        11693 86 -    378907 aaaatgcagccagtctttccataagagcatgtgcaaacttctaagatatattaagtaaaaaagtaaggcataaaatattgtgtata
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129979 86 + 121039945 aaaatgcagccagtctttccataaaagcatgtgcaaacttctaagatatattaagtaaaaaagtaaggcataaaatattgtatata
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65258326 86 + 171882078 aaaatgcagccagtctttccataagaacatgtacaaacttctaatatatattaggttaaaaagtgaggcataaaatattgtgtata
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3826261 86 +  24206276 aaaatgcagccagtctttccataagaacatgtacaaacttctaagatatattaagtaaaaaagtgaggcataaaatattgtgtata
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284114 86 -   1458659 aaaatgcaagtagtcttttcataagagcatgtgcaaacttctaagatatattaagtaaaaaagtgaggcataaaatattgtgtata
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276             495083 84 -   3282555 aaaaggcagccagtctttccacaagagcatttgcaaagttctaagatacattaagtgaaaaagcaaggcataaaatat--tgtata
i saiBol1.JH378276          I 4 C 0
s cebCap1.NW_016107979v1       279701 86 -   1024465 aaaaagcaactaatctttccacaagagcatttgcaaagttctaagatacattaagtgaaaaagcaaggcgtaaaatattgtgtata
i cebCap1.NW_016107979v1    I 24 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e otoGar3.GL873530            6752681 154 -  36342412 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=222961.000000
s hg38.chr15_KI270850v1_alt     88602 123 +    430880 atctgACCCCTTTAGTACACAGTGTAAAAACATCTGTGTCTGTGCTTCTTTATACTTACTTTTTTCTCCCCTGGTGAATACAGGAAACTGTGAGTAGTACAACACAATTAAAAA----AAAAAAAA-C
s gorGor5.CYUI01015946v1        11779 123 -    378907 atctgACCCCTTTAGTACACAGTGTAAAAACATCTGTGTCTGTGCTTCTTTATACTTACTTTTTTCTCCCCTGGTGAGTACAGGAAACTGTGAATAGTACAACACAATTAAAAA----AAAAAAAA-C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130065 117 + 121039945 atctgacccctttagtatacagtgtaaaaaaatctatgtctgtgctagtttatacttgcTTTTTTCTCCCC-GGTGGATATAGGAAACTGTGAATGGTAGAACACAATT---------AAAAAAGA-C
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65258412 116 + 171882078 atctgacccctttagtatacagtgtaaaaaaatctatgtctgtgcttgtttataCTTACTTTTTTCTCCCCTGGTGGATACGGGAAAC--TGAATAGTAGAACACAATT---------TAAAAAAA-C
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3826347 116 +  24206276 atctgacccctttagtatacagtgtaaacaaatctatgtctgtgcttgtttaTACCTACTTTTTTCTCCCCTGGTGGATACGGGAAAC--TGAATAATAGAACACAATT---------TAAAAAAA-C
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284200 117 -   1458659 atctgacccctttagtatacagtgtaaaaaaatctatgtctgtgcttgtttataCTTACTTTTTTCTCCCCTGGTGGATACAGGAAAC--TGAATAGTAGAACACAATT----A----AAAAAAAA-C
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276             495167 114 -   3282555 atccgacccctttagtatacagtgtaaaaaaatcta----tatgcttgtttatacctcttttttt----tctggtgggtacaggaaactgttaatagtagGACACAATTAAAAA----ACAAAAAA--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       279787 108 -   1024465 atctgacccttttagtatacagtgtaaaaaaaT-----------CTTGTTTATACCTCTTTCTTT----TCTGGTGGCTACAGGAAACTGTTAATAGTAGGACACAATTaaaaa----aaaaaaaaa-
i cebCap1.NW_016107979v1    C 0 I 112
s otoGar3.GL873530            6752835 119 -  36342412 gccctactcctttgagccacag-------gcactgcccTCAATGCTTTTTTATACTTGGTTTTTCCCTTCTGGGTGGATACAGAAAACTGTTAATAATAGAACACAGAAAAGTATTTTTGaaaaat--
i otoGar3.GL873530          I 154 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=198541.000000
s hg38.chr15_KI270850v1_alt     88725 120 +    430880 TGTGTGTCTGCTGCACCAGGACCTGTGATAATTG---GGTATAAAAGAC-----------AAAAAAGACATGTCCCTGTCCTCTGGGAAGGGACATGATAATCAAATGAGACTTCTGTCGGATTCTTTTCTCCT
s gorGor5.CYUI01015946v1        11902 118 -    378907 TGTAT--CTGCTGCACCAGGACCTGTGATAATTG---GGTATAGAAGAC-----------AAAAAAGACATGTCCTTGTCCTCTGGGAAGGGACATGATAATCAAATGAGACTTCTATCGGATTCTTTTCTCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130182 120 + 121039945 TGTGTGGCTTCTGTGCCAGGACCTGTGGTAATTG---GGTATAAAAGAC-----------AAAAAAGGCATGTCCCTGTCCTCTGGGAAGGGACATGATAATTGAATGGGACGTTTATTGGATTCTTTTCTCCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65258528 131 + 171882078 TGTGTGGCTTCTGTGCCAGGACCTGTGATAATTG---GGTATaaaagattaaaaaaaaaaaaaaaaaGCATGTCCATGTCCTCTGGGAAGGGACATGATAATCGAATGGGACTTCTATCGGATTCTTTTCTCCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3826463 119 +  24206276 TGTGTGGTTTCTGTGCCAGGACCTGTGATAATTG---GGTATAAAAGAT------------AAAAAGGCATGTCCATGTCCTCTGGGAAGGGACATGATAATCGAATGGGACTTCTATCAGATTCTTTTCTCCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284317 119 -   1458659 TGTGTGGCTTCTGTGCCAGGACCTGTGATAATTG---GGTATAAAAGAT------------AAAAAGGCATCTCCATGTCCTCTGGGAAGGGACATGATAATCGAATGGGACTTCTATCGGATTCTTTTCTCCT
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276             495281 108 -   3282555 -----GGCTTCTGTGCCAGGCTCTGTGATAATTG---AGTGTCAAAGAC-----------AAATTAGGCATATCCCTGTCCTCTGTGAA-----CCGATAAGCTGATGGGACTTCCATTGGATTACCGTGTC--
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6752954 118 -  36342412 tcattggattctatgccagactccatgatgagtggttggtattaaaaac-----------aaataagacacatccctgtcctctgggaa-----ctgataatctaatgggACTCCCATCAGATGACTGCCTCCT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       279895 112 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=628890.000000
s hg38.chr15_KI270850v1_alt     88845 251 +    430880 GTTTTGATCTTATCACCCTTTCTTGGTCTCCTCCGATCTCTTCTTCCTTgtcctacttctt----ctcttctcattctgtgctttctctgagtaatcttt--gactcccattacttaagtcatgacctgtgttccagggactcctaaatttgt-------------attcatctccagagtttcaaacccatatatctgtctgtatatcatatat-tt-agggaatctcacttgga-gtgacatgggtgttcaaaatgatgatatttaaaTTT
s gorGor5.CYUI01015946v1        12020 247 -    378907 GTTTTGATCTTATCACCCTTTCTTGGTCTCCTCCGATCTCTTCTTCCTTGGCCTACTTCTT-----TCTTCTCATTCTGTGCTTTCTCTGAGTAATCTTT--GACTCCCATTACTTAAGTCATGACCTGTGTTCCAGGGACTCCTAAATCCGT-------------ATTCATCTCCAGAGTTTCAAACCCATATATCTGTCTGCATATCATATAT-TT-AGGGAATCTCACTTGGA-GTGACATGGGTGTTCAAAATGAT---ATTTAAATTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130302 253 + 121039945 GTTTTGATCTTATCACCCTGCCTTGGTCTCCTCCGGTCTCTTCTTCCTTGGCCTACTTCTTTCTTCTCTTCTCATTCTGTGCTTTCTCTGAGTAATCTTT--GACTCGTATTACTTAAGTCATGACCTGTGTTCCAGGGATTCCTAAATCCGT-------------GTGCGTCTCCAGAGTTTCAAACCCATATATCTGTCTGCATGTCATATATGTT-AGGGAATCTCACTTGGT-GTGACATGCGTGTTCAAAATGAT---ATTTAAATTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65258659 256 + 171882078 GTTTTGATCTTATCACCCTGCCTTGGTCTCCTCCGATCTCTTCTTCGTTGGCCTACTTCTTTCTTCTCTTTTCATCCTGTGTTTTCTCTGAGTAATCTTT--GACTCCCATTACTTAAGTCATGACCTGTGTTCCAGGGATTCCTAAATCTGT-------------ATTCATCTCCAGAGTTTCAAGCCCATATATCTGTCTGTATATCATATATGTT-AGGGAATCTCACTTGGA-GTAACATGGGTGTTCAAAATGATGATATTTAAATTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3826582 256 +  24206276 ATTTTGATCTTATCACCCTGCCTTGGTCTCCTCCGATCTCTTCTTCCTTGGCCTACTTCTTTCTTCTCTTTTCATTCTGTGTTTTCTCTGAGTAATCTCT--GACTCCCATTACTTAAGTCATGACCTGTGTTCCAGGGATTCCTAAATCTGT-------------ATTCATCTCCAGAGTTTCAAGCCCATATATCTGTCTGTATATCATATATGTT-AGGGAATCTCACTTGGA-GTAACATGGGTGTTCAAAATGATGATATTTAAATTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284436 253 -   1458659 GTTTTGATCTTATCA-TCTGCCTTGGTCTCCTCTGATCTCTTCTTCCTTGGCCTACTTCTTTCTTCTCTTTTCATTCTGTGCTTTCTCTGAGTAATCTTT--GACTCCCATTACTTAAGTCATGACCTGTGTTCCAGGGATTCCTAAATCCAT-------------ATTCATTTC--GACTTTCAAACCCATATATCTGTCTGTATATCATATATGTT-AGGGAATCTCACTTGGA-GTAACATGGGTGTTCAAAATGATGATATTTAAATCT
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276             495389 248 -   3282555 ATTTTTATCTTACCAACCTTCCTGGGT---CTCTGACCTGTTCTTCTTTGGCCTACTTCTTTCTTCTTTTCTCATTCAGTGCTT----TGAATAATCCTT--TACTCCCATGACTTTAGTCATGACCTCTGTTCTAGGGATTCCTAAATCTGC-------------ATTCATTTCCAGAGTTT-AAACCCATATATCTGTCTGTATATCATACATGTT-AGGGAGTCTTACTTGGA-GTGCCATGGGTATTCAAAATGATGACATTTAAATTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280007 248 -   1024465 ATTTTTATCTTATCACCCTTCTTGGGT---CTCTGACCTGTTCTTCCTTGGCCTACTTCTTTCTTCTTTTCTCATTCAGTGCTT----TGAATAATCCTT--TACTCCCATTACTTTAGTCATGACCTCTGTTCTAGGGATTCCTAAATCCGC-------------ATTCATTTCCAGAGTTT-AAACCCATATATCTGTCTGTATGTCATACCTGTT-AGGGAGTCTCACTTGGA-GTGCCATGGGTGTTCAAAATGATGACATTTAAATTT
i cebCap1.NW_016107979v1    I 112 I 107
s otoGar3.GL873530            6753072 265 -  36342412 GTTTTTATCTTATCACTCTGCCTTGCTTTGCTCTGATCTCTTCttc-ttggtccgcctctt----ctctttttagtctctgctttctctgagtaatctcttctattcccattacttaagtcatgacctatatttcagggattcctaaatctgtgtatctagctaaaatttatctt--gagtttcaaacccatatatctgtctatgtattatatatgttaagggaatatcacttggatgtgccatggct-ttccaaataacgacatttaaattt
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=103941.000000
s hg38.chr15_KI270850v1_alt     89096  38 +    430880 ----TCACGTATCCATCTCCTAGCACTCTAT---------------------------------------------------------------------CTAGTCACATA
s gorGor5.CYUI01015946v1        12267  38 -    378907 ----TCATGTATCCACCTCCTAGCACTCTAT---------------------------------------------------------------------CTAGTCACATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130555 107 + 121039945 ----TCATGTATTCACCTTATAGCACTCTATCAGCCACATCATGTGTTCCATCAATAATTCTCCTTGTCATTGTGAGTGGGACAAAATGAAATAATCAAACCAGTCACCCA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65258915 107 + 171882078 ----TCATGTATCCGCTTCCTAGCACTCTATCAGCCCTATCATGTGTTCCATCAATAATTCTCCTTGTAACTGCGAGTGGGACAAAATGAAATAATCAAACTAGTCACCCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3826838 107 +  24206276 ----TGATGTATCCACTTCCTAGCACTCTATCAGCCCTATCATGTGTTCCATCAATAATTCTCCTTGTCATTGTGAGTGGGACAAAATGAAATAATCAAACTAGTCACCCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284689 107 -   1458659 ----TCATGTATCTACCTCTTAGCACTGTATCAGTCCCATCATGTGTTCCATCAACAATTCTCCTTGTCATTGTGGGTGGGACAAAATGAAATAATCAAACTAGTCACCCA
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276             495637 107 -   3282555 ----GCATTTACCCACCTTCTAGCACTGTATCAGCCCCATCATGTGTTTCCTCAGTAATTCTCCTTGTGAGTGTGTGTGGGACAAAATGAAATAATTAAACTAGTCACCCG
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6753337 105 -  36342412 ccactca---atctgcctcctagcactccaccacccttatcatgttttcc-tcaGCAAATCTTTTTGT-GTTGTGGGC-AGACAGAATGCAATAATGAAACTAGTCACTCA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       280255 107 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=59137.000000
s hg38.chr15_KI270850v1_alt     89134 19 +    430880 TGCCTAAACCTGGGAACTG
s gorGor5.CYUI01015946v1        12305 19 -    378907 TGCCTAAACCTGGGAACTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130662 19 + 121039945 TGCCTAAACCTGGGAACTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65259022 19 + 171882078 TGCCTAAACCTGGGAACTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3826945 19 +  24206276 TGCCTAAACCTGGGAACTG
i chlSab2.chr29             C 0 I 39
s manLeu1.NW_012105520v1       284796 19 -   1458659 TGCGCAAACCTGGGAACTG
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276             495744 19 -   3282555 TGCCTAAACCTGGGAACTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280362 19 -   1024465 TGCCTAAACCTGGGAACTG
i cebCap1.NW_016107979v1    I 107 C 0
s otoGar3.GL873530            6753442 19 -  36342412 TGCCCAAATGTGGGAACTG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=38293.000000
s hg38.chr15_KI270850v1_alt     89153 21 +    430880 TCTTAATATTCTTTTATATAC
s gorGor5.CYUI01015946v1        12324 21 -    378907 TCTTAATATTCTTTTATATAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130681 21 + 121039945 TCTTAGCGTTCTTTTATATGC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65259041 21 + 171882078 TCCTAGCATTCTTTTATATAC
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       284815 21 -   1458659 TCCTAGCATTCTTTTATATAC
i manLeu1.NW_012105520v1    C 0 I 20
s saiBol1.JH378276             495763 21 -   3282555 TCTTAGCGTTCTTTTATATAC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280381 21 -   1024465 TCTTAGCGTTCTTTTATATAC
i cebCap1.NW_016107979v1    C 0 I 23
s otoGar3.GL873530            6753461 21 -  36342412 TCATCTAGTTCTTTTTTACAG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e chlSab2.chr29               3826964 39 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=6038.000000
s hg38.chr15_KI270850v1_alt     89174 11 +    430880 ACCTGTTCTGA
s gorGor5.CYUI01015946v1        12345 11 -    378907 ACCTGTTCTGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130702 11 + 121039945 TACTGTTCTCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65259062 11 + 171882078 TACTGCTCTCT
i macFas5.chr7              C 0 I 9
s saiBol1.JH378276             495784 11 -   3282555 TACTATTCCCT
i saiBol1.JH378276          C 0 I 2
s otoGar3.GL873530            6753482 11 -  36342412 CACTGTTCTGA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       280402 23 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012105520v1       284836 20 -   1458659 I
e chlSab2.chr29               3826964 39 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=19680.000000
s hg38.chr15_KI270850v1_alt     89185 21 +    430880 CCTCCCCCCC-AAA-----CTAGTAAA
s gorGor5.CYUI01015946v1        12356 22 -    378907 CCCCCCCCCCCAAA-----CTAGTAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130713 21 + 121039945 GACCCCCCCC-AAA-----CTAGTAAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65259082 21 + 171882078 CCTCCCCCCG-AAA-----CTAGTAAA
i macFas5.chr7              I 9 C 0
s chlSab2.chr29               3827003 21 +  24206276 CCTCTCCCCG-AAA-----CTAGTAAA
i chlSab2.chr29             I 39 C 0
s manLeu1.NW_012105520v1       284856 21 -   1458659 CCTCCCCCCG-AAA-----CTAGTAAA
i manLeu1.NW_012105520v1    I 20 C 0
s saiBol1.JH378276             495797 10 -   3282555 ----ACCCCC-AGA-----T-------
i saiBol1.JH378276          I 2 C 0
s otoGar3.GL873530            6753493 23 -  36342412 ---CCCCCTA-AGAACTATCTACTAAG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       280402 23 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=186327.000000
s hg38.chr15_KI270850v1_alt     89206 75 +    430880 TTTCTAAGACCTGTCCTTCTGAATGTCTCTTACAATTTTCCCTGTGATCTCAGTTTCTTCCTCCCATCCCTCAAA
s gorGor5.CYUI01015946v1        12378 75 -    378907 TTTCTAAGACCTGTCCTTCTGAATGTCTCTTACAATTTTCCCTGTGATCTCAGTTTCTTCCTCCCATCCCTCAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130734 75 + 121039945 TTTCTAAGACCTGTCCTTCTGAATGTCTCTTATTATTTTCCCTGTGATCTCAGTTTCTTCTTCCCATCCCTCAGA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65259103 75 + 171882078 TTTCTAAGACCTGTCCTTCTGAATGTCTCTTACTATTTTCCCTGTGATCTCACTTTCTTCCTCCCATCCCTCAAA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3827024 75 +  24206276 TTTCTAAGACCTGTCCTTCTGAATGTCTCTTACTATTTTCCCTGTGATCTCAGTTTCTTCCTGCCATCCCTCAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284877 75 -   1458659 TTTCTAAGACCTGTCCTTCTGAATGTCTCTTACTATTTTCCTTGTGATCTCAGTTTCTTTCTCCCATCCCTCAAA
i manLeu1.NW_012105520v1    C 0 I 53197
s saiBol1.JH378276             495807 75 -   3282555 TTTCTAAGACCCGTCCTTCTGAATGTCTTTTACTATTTTTCCTGTGATCTCAGTTTCTTCCTCCCATTGCTCAAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280425 75 -   1024465 TTTCTAAGACCTGTCCTTCTGAATGTCTTTTACTACTTTTCCTGTGATCTCAGTTTCTTCCTCCCATTGCTCAAA
i cebCap1.NW_016107979v1    I 23 C 0
s otoGar3.GL873530            6753516 45 -  36342412 TTTCTAAGACTTGTCC--------------AACTACTTTC----TAA------------CCCCCTATCCCTCATA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=6416.000000
s hg38.chr15_KI270850v1_alt     89281 17 +    430880 TGCTTtgtgtgtgtgtg
s gorGor5.CYUI01015946v1        12453 11 -    378907 TGCt------gtgtgtg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130809 11 + 121039945 TGCT------TTTTGTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65259178 10 + 171882078 TGC-------TTTTGTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3827099 11 +  24206276 TGCT------TTTTGTG
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276             495882 13 -   3282555 TACTTT----TTTTGTG
i saiBol1.JH378276          C 0 I 1
s cebCap1.NW_016107979v1       280500 13 -   1024465 TACTTT----TTTTGTG
i cebCap1.NW_016107979v1    C 0 I 53
s otoGar3.GL873530            6753561 10 -  36342412 TACT------TTTTCT-
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012105520v1       284952 53197 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=9748.000000
s hg38.chr15_KI270850v1_alt     89298 11 +    430880 tgtgtgtggtg
s gorGor5.CYUI01015946v1        12464 11 -    378907 tgtgtgtggtg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130820 11 + 121039945 TGTGTGTGGTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65259188 11 + 171882078 TTTGTGTGGTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3827110 11 +  24206276 TTTGTGTGGTG
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276             495896  3 -   3282555 --------GTG
i saiBol1.JH378276          I 1 C 0
s otoGar3.GL873530            6753571  7 -  36342412 ----TTTGGGG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       280513 53 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012105520v1       284952 53197 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=86714.000000
s hg38.chr15_KI270850v1_alt     89309 49 +    430880 GGGGAAGAGAGTAAAATTGAAATTTGTGGAAAACGTACTAGCCTGTCTG
s panTro5.chr15              17326520 49 -  83230942 GGGGAAGAGAGTAAAATTGAAATTTGTGGAAAACGTACTAGCCTGTCtt
i panTro5.chr15             N 0 C 0
s gorGor5.CYUI01015946v1        12475 48 -    378907 -GGGAAGAGAGTAAAATTGAAATTTGTGGAAAATATACTAGCCTGCCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130831 49 + 121039945 GGGGAAGGGAGTAAAATTGAAATTCGCGGATAATGTACTACCCTGtctt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65259199 49 + 171882078 GGGGAAGAGAGTAAAATTGAAATTCATGGAAAATGTACTACCCTGTCTG
i macFas5.chr7              C 0 I 120
s chlSab2.chr29               3827121 49 +  24206276 GGGGAAGAGAGAAAAATTGAAATTCATGGAAAATGTACTACCCTGTCtg
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276             495899 49 -   3282555 GGGGAAGGGAGTAAAATGGAAATTCCTGGAAAATGGACTACCCTGTCTT
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6753578 46 -  36342412 GGGCAAGAACATAATATTTAAATTTCT---ACATGTACTACCTTCTTTT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       280513 53 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012105520v1       284952 53197 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=5348.000000
s hg38.chr15_KI270850v1_alt     89358 2 +    430880 TC
s panTro5.chr15              17326569 2 -  83230942 tc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        12523 2 -    378907 TC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130880 2 + 121039945 tc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65259368 2 + 171882078 tc
i macFas5.chr7              I 120 C 0
s chlSab2.chr29               3827170 2 +  24206276 tc
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276             495948 2 -   3282555 TC
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6753624 2 -  36342412 TC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       280513 53 -   1024465 I
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012105520v1       284952 53197 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=1911.000000
s hg38.chr15_KI270850v1_alt     89360 1 +    430880 T
s panTro5.chr15              17326571 1 -  83230942 t
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        12525 1 -    378907 t
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130882 1 + 121039945 t
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65259370 1 + 171882078 t
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3827172 1 +  24206276 t
i chlSab2.chr29             C 0 I 123
s saiBol1.JH378276             495950 1 -   3282555 T
i saiBol1.JH378276          C 0 I 1
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       280513 53 -   1024465 I
e otoGar3.GL873530            6753626 0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012105520v1       284952 53197 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=5242.000000
s hg38.chr15_KI270850v1_alt     89361 7 +    430880 GTCtttc
s panTro5.chr15              17326572 7 -  83230942 ttctttc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        12526 7 -    378907 ttctttc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130883 7 + 121039945 tcctttc
i nomLeu3.chr6              C 0 I 431
s macFas5.chr7               65259371 7 + 171882078 ttctttc
i macFas5.chr7              C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       280513 53 -   1024465 I
e otoGar3.GL873530            6753626 0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012105520v1       284952 53197 -   1458659 I
e chlSab2.chr29               3827173 123 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             495951 1 -   3282555 I

a score=877.000000
s hg38.chr15_KI270850v1_alt     89368 4 +    430880 gagg
s panTro5.chr15              17326579 4 -  83230942 gagg
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        12533 4 -    378907 gagg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102131321 4 + 121039945 gaga
i nomLeu3.chr6              I 431 C 0
s macFas5.chr7               65259378 2 + 171882078 ga--
i macFas5.chr7              C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       280513 53 -   1024465 I
e otoGar3.GL873530            6753626 0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012105520v1       284952 53197 -   1458659 I
e chlSab2.chr29               3827173 123 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             495951 1 -   3282555 I

a score=348121.000000
s hg38.chr15_KI270850v1_alt     89372 288 +    430880 tgaagtctccctcttgtccccctggctggagtgcaatggcacaatcttggcttactgcaacttccatctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcacctgccaccatgcccagctaatttttgtgtttttagtagagatggggtttcatcatgttggccaggctggtctcgaactcctgacctcaggtgatccacccgccttggcctcccaaattgctgggattacaggtgtgagccaccatgcctggccACTACCCTG----
s panTro5.chr15              17326583 288 -  83230942 tgaagtctccctcttgtccccctggctggagtgcaatggcacaatcttggctcactgcaacctccatctcctgggttcaagcagttctcctgcgtcagcctcctgagtagctgggattacaggcacctgccaccatgcccagctaatttttgtgtttttagtagagacggggtttcatcatgttggccaggctggtctcgaactcctgacctcaggtgatccacccgccttggcctcccaaattgctgggattacaggtgtgagccaccatgcctggccACTACCCTG----
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        12537 287 -    378907 tgaagtctccctcttgtccccctggctgga-tgcaatggcacaatcttggcttactgcaacctccatctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcacctgccaccatgcccagctaatttttgtgtttttagtagagacggggtttcatcatgttggccaggctggtctcgaactcctgacctcaggtgatccacctgccttggcctcccaaattgctgggattacaggtgtgagccaccatgcctggccATTACCCTG----
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102131325 289 + 121039945 cggagtttcgctcttgttgcccaggctggagtacaatggcgcaatctcagctcaccgcaacctccgcctcccaggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcatctgccaccatgcccagctaatttttgtatttttagtagagatgaggtt---tcatgttggccaggctggtctcaaactcctaacctcaggtgatccgcccacctcggcctcccaaattgctgggattacaggtgtgagccaccgtgcctggccACTACCCTGTCTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65259380 291 + 171882078 tgaactctcactcttgtcccccaggctgcagtgcaatggtgcaattttgccttactgcaacctccacctcccaggttcaagcaattctcctggctcagcctcctgagtagctgggattacaggcacctgtcaccatgcccagctaatttttgtatttttagtagagatggggtttcaccatgttggtcaggctggtctc-agctcctgacctcagatgatgtgcctgcctcggcctcccaaattgctgggattacaggtgtgagtcaccgtgcccagccACTACCCTGTCTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3827296 291 +  24206276 tgaactctcactcttgtcccccaggctgcagtgcaatgatacaattttgccttactgcaacctccacctcccaggttcaagcaattctccgggctcagcctcctgagtagctgggattacaggcacctgccaccatgcccagctaatttttgtatttttagtagagatggggtttcaccatgttggtcaggctggtctc-agctcctgacctcagatgatgtgcctgcctcggcctcccaaattgctgggattacaggtgtgagtcaccgtgtccagccACTACCCTGTCTT
i chlSab2.chr29             I 123 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e cebCap1.NW_016107979v1       280513  53 -   1024465 I
e otoGar3.GL873530            6753626   0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012105520v1       284952 53197 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             495951   1 -   3282555 I

a score=7833.000000
s hg38.chr15_KI270850v1_alt     89660 4 +    430880 TCTT
s panTro5.chr15              17326871 4 -  83230942 TCTT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        12824 4 -    378907 TCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102131614 4 + 121039945 TCTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65259671 4 + 171882078 TCTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3827587 4 +  24206276 TCTT
i chlSab2.chr29             C 0 C 0
s cebCap1.NW_016107979v1       280566 4 -   1024465 TCTT
i cebCap1.NW_016107979v1    I 53 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e otoGar3.GL873530            6753626 0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012105520v1       284952 53197 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             495951 1 -   3282555 I

a score=2800.000000
s hg38.chr15_KI270850v1_alt     89664 1 +    430880 G
s panTro5.chr15              17326875 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        12828 1 -    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102131618 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65259675 1 + 171882078 G
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3827591 1 +  24206276 G
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276             495952 1 -   3282555 G
i saiBol1.JH378276          I 1 C 0
s cebCap1.NW_016107979v1       280570 1 -   1024465 G
i cebCap1.NW_016107979v1    C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e otoGar3.GL873530            6753626 0 -  36342412 C
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012105520v1       284952 53197 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=104341.000000
s hg38.chr15_KI270850v1_alt     89665 35 +    430880 TTGCTTGGTATGACTCCACTACCCTGCTGCCTCTC
s panTro5.chr15              17326876 35 -  83230942 TTGCTTGGTATGACTCCACTACCCTGCTGCCTCTC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        12829 35 -    378907 TTGCTTGGTATGACTCCACTACCCTGCTGCCTCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102131619 35 + 121039945 TTGCTTGGTATGACTCCACTACCCTGCTGCCTGTC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65259676 35 + 171882078 TTGCTTGGTATGACTCTACTACCCTGCTGCCTCTC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3827592 35 +  24206276 TTGCTTGGTATGACTCCACTACCCTGCTGCCTCTC
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276             495953 35 -   3282555 TTGCTTGGTATGAGTCCACTACCCTGATGACTCTC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280571 35 -   1024465 TTGCTTGGTATGAGTCCACTACCCTGATGCCTCTC
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530            6753626 35 -  36342412 TTGTTTGGTATGACTCCACCACACCACTGCCTCTC
i otoGar3.GL873530          C 0 T 14842
e calJac3.chr10             113951365 89514 - 132174527 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012105520v1       284952 53197 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=10031.000000
s hg38.chr15_KI270850v1_alt     89700 4 +    430880 TCCC
s panTro5.chr15              17326911 4 -  83230942 TCCC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        12864 4 -    378907 TCCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102131654 4 + 121039945 TTCC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65259711 4 + 171882078 TCCC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3827627 4 +  24206276 TCCC
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276             495988 4 -   3282555 TCCC
i saiBol1.JH378276          C 0 N 0
s cebCap1.NW_016107979v1       280606 4 -   1024465 TCCC
i cebCap1.NW_016107979v1    C 0 N 0
e calJac3.chr10             113951365 89514 - 132174527 T
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012105520v1       284952 53197 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=140896.000000
s hg38.chr15_KI270850v1_alt     89704 116 +    430880 CGTACAGCAGCataatttaggaatcagagagac--------tgaggaggatata---tattatttaggtgcaccggcccagtcagattaacatctaaaggactgagccctgaacaaagagtcaggtt
s panTro5.chr15              17326915 116 -  83230942 CGTACAGCAGCataatttaggaatcagagagac--------tgaggaggatata---tattatttaggtgcaccagcccagtcagattaacatctaaaggactgagccctgaacaaagagtcaagtt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        12868 116 -    378907 CGTACAGCAGCataatttaggaatcagcgagac--------tgaggaggatata---tattatttaggttcaccggcccagtcagagtaacatctaaaggactgagccctgaacaaagagtcaggtt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102131658 127 + 121039945 CCTGCAATgggataatttaggaatcagagagactgaggggttgaggaggatatatattattatttaggagcaccggcccagtcaaattaacatctaaaggactgagccctgaacaaagagtcaggtt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65259715 127 + 171882078 CCTGCAGCgggataatttaggaatcagagagactgaggggttgaggaggatatatattattatttaggtgccctggcccagtcagattaacatctaaaggactgagccctgaacaaagagtcaggtt
i macFas5.chr7              C 0 I 94363
s chlSab2.chr29               3827631 127 +  24206276 CCTGCAgcgggataatttaggaatcagagagactgaggggttgaggaggatatatattattatttaggtcccctggcccagtcagattaacatctaaaggactgagccctgaacaaagagtcaggtt
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             113951365 89514 - 132174527 T
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012105520v1       284952 53197 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=17665.000000
s hg38.chr15_KI270850v1_alt     89820 19 +    430880 accttttaagcattttgtg
s panTro5.chr15              17327031 19 -  83230942 accttttaagcattttgtg
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        12984 19 -    378907 accttttaagcattttgtg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102131785 19 + 121039945 accttttaagcattttgtg
i nomLeu3.chr6              C 0 I 45709
s chlSab2.chr29               3827758 19 +  24206276 accttttaagcattttgtg
i chlSab2.chr29             C 0 n 0
s calJac3.chr10             113861851 13 - 132174527 ACCTTTAGAACAG------
i calJac3.chr10             T 89514 C 0
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012105520v1       284952 53197 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=-507.000000
s hg38.chr15_KI270850v1_alt     89839 2 +    430880 TC-
s panTro5.chr15              17327050 2 -  83230942 TC-
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        13003 2 -    378907 TC-
i gorGor5.CYUI01015946v1    C 0 C 0
s calJac3.chr10             113861864 2 - 132174527 -CT
i calJac3.chr10             C 0 C 0
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1       304209 60142 +   4111199 T
e manLeu1.NW_012105520v1       284952 53197 -   1458659 I
e chlSab2.chr29               3827777 0 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102131804 45709 + 121039945 I

a score=6575.000000
s hg38.chr15_KI270850v1_alt     89841 5 +    430880 GGTCA
s panTro5.chr15              17327052 5 -  83230942 GGTCA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        13005 5 -    378907 GGTCA
i gorGor5.CYUI01015946v1    C 0 C 0
s manLeu1.NW_012105520v1       338149 5 -   1458659 GGTCA
i manLeu1.NW_012105520v1    I 53197 C 0
s colAng1.NW_012116021v1      3777098 5 -   4111199 GGTCA
i colAng1.NW_012116021v1    n 60142 C 0
s calJac3.chr10             113861866 5 - 132174527 AGTCA
i calJac3.chr10             C 0 C 0
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e chlSab2.chr29               3827777 0 +  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102131804 45709 + 121039945 I

a score=678489.000000
s hg38.chr15_KI270850v1_alt     89846 437 +    430880 Ttatgccgacaaggtgtccgcactaagttcagtatcagtatggtgacctcctgggaacagg---tcatcggcttgcctaaggatgggagaactggcccaggtcagaaagggagcaggtcagaattcctgcaccaatcggtagtgggactgtgcctgggcaatatagcaagatcttggttcttaaaattca--aaata--aagaaCAGCTCATTCCCCTCTGGGGAGGGGCTGGCTCAAGGTTACACAGTGAGTGTGGGGGCAGAGGCGGGCCCAC---TGTACCTCCCTTGTTGGGTTGTCTGAGGACCCCTCTGGCCACC-CCCCACAGGAGATGGAGGAGGACATCTGGACAGTGAGCAGG---AGGCGCTTCGGCCCATGCCGAACATCCCAGGGGACCTGGAGAGCCGGGAGGCCATGGTGAGCCTGACTTTCCCTGCCCCTACTTT
s panTro5.chr15              17327057 440 -  83230942 TtatgccgacaaggtgtccgcactaagttcagtatcagtatggtgacctcctgggaacagggggccatcgggttgcctaagggtgagagaactggctcaggtcagaaggggagcaggtcagaattcctgcaccaatcggtagtgggactgtgcctgGGCAATATAGCAAGATCTTGGTTCTTAAAATTCA--AAATA--AAGAACAGCTCATTCCCCTCTGGGGAGGGGCTGGCTCAAGATTACACAGTGAGTGTGGGGGCAGAGGTGGGCCCAC---TGTACCTCCCTTGTTGGGTTGTCTGAGGACCCCTCTGGCCACC-CCCCACAGGAGATGGAGGAGGACATCTGGACAGTGAGCAGG---AGGCGCCTCGGCCCATGCCGAACATCCCAGGGGACCTGGAGAGCCGGGAGGCCATGGTGAGCCTGACTTTCCCTGCCCCTACTTT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        13010 437 -    378907 TtatgccgacaaggtgtccgcactaagttcggtatcagtatggtgacctcctgggaacagggggccatcgggttgcttaaggatgggagaactggcccaggtcagaaggggagcaggtcagaattcctgcaccaatcggtagtgggactgtgcctgGGCAATATAGCAAGATCTTGGTTCTTAAAATTCA--AAATA--AAGAACAGCTCATTCCCCTCTGGGGAGGGGCTGGCTCAAGGTTACACGGTGAGTGTGGGGGCAGA---GGGCCCAC---TGTACCTCCCTTGTTGGGTTGTCTGAGGACCCCTCTGGCCACC-CCCCACAGGAGATGGAGGAGGACATCTGGACAGTGAGCAGG---AGGCGCCTCGGCCCATGCCGAACATCCCAGGGGACCTGGAGAGCCGGGAGGCCATGGTGAGCCTGACTTTCCCTGCCCCTACTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26              50403183 445 -  58131712 ttatgccaaccgggtgtctgtactaagttcggcatcaatatgatgacctcccaggagcaggcggccaccaggttgcctaaggatgagtgaactggcccagatcagaaagggagcaggtcagaactcctgcaccaactggtagtgtgactgtgcctgGGCAATATAG-AAGATCTTGGATCTTATAGGAAAACTAAAG--AACAGCAGGTCATTCCCCTCTGGGGAGGGGCTGGCTCAGGGTTACACAGTGAGGGTGGGGACAGAGGTGGGCCCAC---GGTACTTCCCTTGTTGGGTTTTCTGAGGACCCCTCTGGCCACCTCCCCACAGGAGATGGAGGAGGACATCTGGACACTGAGGAGGAGAAGGTGCCTCGGCCTATGCCTAGTGTCCCAGGGGACCTGGAGAGCCAGGAGGCCATGGTGAGTCTGACTTTCCCTGTGCCCGCTTT
i chlSab2.chr26             n 0 C 0
s manLeu1.NW_012105520v1       338154 439 -   1458659 TtatgccgaccgggtgtctgcgctaagttcggtatcaatatggtgacctcctgggagcaggaggccatcaggttgcctaaagacgggagaactggcccaggtcagaaagggaccaggtcaggactcctgcaccaatcagtagtgggactgtgcctgGGCAGTATAGCAAGATCTTGGTTCTTAAAAGTAA--TAAGA--CAGAACAGCTCATTCCCCTCTGGGAATAGGCTGGCTCAGGGCTACACAGTGAGGGTGGGGGCAGAGGTGGGCCCCC------ACTTCCCTTGTTGGGTTGTCTGAGGACCCCTCTGGTCACC-CCCTAGAGGAGATGGAGGAGGACATCTGGACAGTGAGGAGGAGGAGGCACCTCGGCCCATGCAGGACATCCCAGAGGACCGGGAGAGCCGGAAGGTCA-GGTGAGCCTCACTTTCCCTGCCCCTACTTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3777103 438 -   4111199 Ttatgccgaccaggtgtccacgctaagtttggtatcaatatggtggcctcctgggagcaggaggccatcaggttgcctgaggac---agaactggcccaggtcagaaagggaccaggtcaggactcccgcaccaatcggtagtgggactgttcctgGGCAATATAGCAAGATCTTGGTTCTTAAAAGTAA--AAATA--CAGAACAGCTCATTCTCCTCTGGGAATGGGCTGATTCAGGGTTACACA-TGAGGGTGGGGGCAGAGGTGGGCCCCC---AATACTTCCCTTGTTGGGTTGTCTGAGGACCCCTCTGGCCACC-CCCTAGAGGAGATGGAGGAGGACATCTGGACAGTGAGGAGGAGGAGGCGCCTCGGCCCATGCCGAACATCCCAGGGGACCTGGAGAGCCTGGAGGCCA-GGTGAGCCTGACTTTCCCTGCCCCTACTTT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113861871 441 - 132174527 Ttatgatgaccaggtgtccacactaagttcggcatcagtatggtgacctcctggaagtggg-ggccaccaggttgcctaaggaagggtgaactggcccagatcagaaagggagcagttcagaactcccacactgattggtagtgggactgtgcctgGACAGTATAGCAAGAACTTGGTTCTTAAAAGTAA--AAAAAACAACAGTAGTTCATTCCTCTGTAGGGAGGGGCTGGCTCAGGGTTACACAGTGAAGGTAGAGGCAGAGGTGGGCCCACAGTAGTACCTCCCTTGTTGGATTGTGTGCAGACCCCTCTGGCCACA-CCCCACAGGAGATGGAGGAGGACATATGGACAGTGAGGAGGAGGAGGTGCCTCGGCCCA------GCATTGCAGAGATCCTGGAGAGCCGAGAGGCCATGGTGAGCCTGACTCCCCCCGCTCCTCCTTT
i calJac3.chr10             C 0 C 0
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102131804 45709 + 121039945 I

a score=245836.000000
s hg38.chr15_KI270850v1_alt     90283 113 +    430880 GCCACCTTCCTCTGTGGTCCCTCCGAAACCCCCTTATGTTCTTGGTTTCCCCGCCTTCTGACTTCTGTGGACTTTCTCTGCTTCTGGGAGCCAGTGGTCAGACACCATTTCAC
s panTro5.chr15              17327497 113 -  83230942 GCCACCTTCCTCTGTGGTCCCTCCGAAACCCCCTTATGTTCTTGGTTTCCCCGCCTTCTGATTTCTGTGGACTTTCACTCCTTCCGGGAGCCAGTGGTCAGACACCATTTCAC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        13447 113 -    378907 GCCACCTTCCTCTGTGGTCCCTCCGAAACCCCCTTATGTTCTTGGTTTCCCCGCCTTCTGATTTCTGTGGACTTTCACTCCTTCTGGGAGCCAGTGGTCAGACACCATTTCAC
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26              50403628 113 -  58131712 GCCACCTTCCTCTGTGGTCCCTCCAAGACCCCGTTATGCTCTTGCTTTCCCCGCCTTCTGATTTCTCTGGACCTTCACCCCTTCCGGGAGCCAGTGGTCAGACACCACTTCAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       338593 113 -   1458659 GTCACCTTCCTCGCTGGTCCCTCCCAGATCCCCTTATGTTCTTGGTTTCCCTGCCTTCTGATTTCTGTGGACTTTCACTCCTTCCGGGAGCCAGTGGTCAAACACCATTTCAC
i manLeu1.NW_012105520v1    C 0 I 3583
s colAng1.NW_012116021v1      3777541 113 -   4111199 GTCACCTTCCTCGGTGGTCCCTCCCAGATCCCCTTATGCTCTTGGTTTCCCTGCCTTCTGATTTCTGTGGACTTTCACTCCTTCCGGGAGCCAGTGGTCAGACACCATTTCAC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113862312 113 - 132174527 GCCACCTTCCTCTGTGGTCCCTCCCAGGTCCCCTTATGCTCTCGGTTTCTTCACCTTCTGATTTCTCTGGACACTAACCTCTTCCAGGAGCCAGTGCTCAGACACCATTTCAC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       115046 108 -   1024465 GCCACCTTCCTCTGTGGTCCCTCCGAGACCTCCTTATGCTCTTGGTTTCTCTGCCTTCTGATTCCTCTGGACCCTCACCCCTTCCGGGAGCCGGTGTTCAGACACCAT-----
i cebCap1.NW_016107979v1    N 0 C 0
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102131804 45709 + 121039945 I

a score=223083.000000
s hg38.chr15_KI270850v1_alt     90396 154 +    430880 CTGTGACCAACAGGTGCACTCTGTGAGGCCCGAAATGAAGGGGCTATGCTCCA----TCTGCCTGCCCCAGTTGTTATGTGTATACCCCTACAAGAATACTCACCTCTTGTCTTCAGGTGGCATTTTTCAACTCCGCTGGAGCCAATGCCCAGGAGGA
s panTro5.chr15              17327610 154 -  83230942 CTGTGACCAACAGGTGCACTCTGTGAGGCCCGAAAGGAAGGGGCTATGCTCCA----TCTCCCTGCCCCAGTTGTTATGTGTATACCCCTACAAGAATACTCACCTCTTGTCTTCAGGTGGCATTTTTCAACTCCGCTGGAGCCAGTGCCCAGGAGGA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        13560 158 -    378907 CTGTGACCAACAGGTGCACTCTGTGAGGCCTGAAAGGAAGGGGCTGTGCTCCACCTCCCTGCCTGCCCCTGTTGTTCTGTATATGCCCCTACAAGAATACTCACCTCTTGTCTTCAGGTGGCATTTTTCAACTCCGCTGGAGCCAGTGCCCAGGAAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26              50403741 154 -  58131712 CTGTGACCCACAGGTGCACTCTCTGAGGCCCCAAGGGAAGGGACTGTGCTCCA----CCTCCCAGCCCCATTTGTTCTGTGTATGCCCCTACAAGAATACTCAGCTCTTGCCTTCAAGTGGCATTTTTCAACTCCGCTGGAGCCAGTTTCCAGGAGGA
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1      3777654 153 -   4111199 CTGTGACCAACAGGTGCACACTCTGA-GCCCCAAGGGAAGGGGCTGCGCTCCA----CCTCCCTGCCCCGGTTGTTCTGTGTATGTCCCTACAAGAATACTCACCTCTTGCCTTCAGGTGGCATTTTTCAACTTCGCTGGAGCCAGTGCCCAGTAGGA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113862425 147 - 132174527 CTGTGACTGACA-GTGCATTCTCTGAGGCCCCAAGGGAAGGGGCTGCACTCCA----CCTCCATG-CCCATTTGCTCTGTGTATGCCGCAACAAGAATGTTCACCT-----CTTCAGGTTGCATTTTCCAACTCGGCTGGGGCCAGTGCCCAGGAGGA
i calJac3.chr10             C 0 I 30
s cebCap1.NW_016107979v1       115154 153 -   1024465 -CGTGACTGACAGGTGCACTCTGTGAGGCCCCAAGGGCAGAGGCTGCGCTCCC----CCTCCCCGCCCCGTCTGTCCTGTGTATACCCCTACAAGAATGCTCCCCTCTTGCCTTCAGGTGCCATTTCTGAAAGCTGCTGGAGCCGGTGCCCAGGAGGA
i cebCap1.NW_016107979v1    C 0 I 132
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012105520v1       338706 3583 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102131804 45709 + 121039945 I

a score=86257.000000
s hg38.chr15_KI270850v1_alt     90550 102 +    430880 ACA------------------------------AAGGGTGTGCTGCCAGCCCCTGGCTCACCCAGTGGCCTCGTCCCAGAAAAAGCCAGAGGTAG------CGGCCCCAGCCCCAGAGAGTGGGGGTGAGTCTGTGTT
s panTro5.chr15              17327764 100 -  83230942 ACA------------------------------AAGGGTGTGCTGCCAGCCCCTGGCTCACCCAGTGGCCTCGTCCCAGAAAAAGCCAGAGGTAG------CGGCCCCAGCCCCAGAG--TGGGGGTGAGTCTGTGTT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        13718 102 -    378907 ACA------------------------------AAGGGTGTGCTGCCAGCCCCTGGTTCACCCAGTGGCCTCGTCCCAGAAAAAGCCAGAGGCAG------CGGCCCCAGCCCCAGAGAGTGGGGGTGAGTCTGTGTT
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26              50403895 132 -  58131712 GCAGGCACAGCTATGTGGGCAGCGGAAGGTGTGAAGGCTGTGCTGCCTGCACCTGGCTCACCTGGTGGCCTCGGCCTGGAAGGAGCCAGAGGCAG------AGGCCCCGGCCCCAGGGACTGGGGGTGAGTTTGTGTG
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1      3777807  81 -   4111199 GCA------------------------------AAGGATGTGCTGCCAGCCCCTGGCTCACCCAGTGGCTTCATCCCAGAG---------------------------GACCCCAGGGACTGGGGGTGAGTCTGTGTG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113862602 105 - 132174527 ACG------------------------------AAAGGTATGCTACCAGCACCTGGCTCACCCAGTGGCCTTGGTGCAGGA---GCCAGAGGCAGTGGCCCCGGCCCCAGCCTCAGGGACTGAGAGTGAGTCTTTGTG
i calJac3.chr10             I 30 C 0
e cebCap1.NW_016107979v1       115307 132 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012105520v1       338706 3583 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102131804 45709 + 121039945 I

a score=107651.000000
s hg38.chr15_KI270850v1_alt     90652 70 +    430880 TGGGGAGACCCACCGGGCCCTGCAGGGGGCCATGGAGAAGCTGCAGGTGAGTAGGTCCTGGCATGGGCCA
s panTro5.chr15              17327864 70 -  83230942 TGGGGAGACCCACCGGGCCCTGCAGGGGGCCATGGAGAAGCTGCAGGTGAGTAGGTCCTGGCATGGGCCA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        13820 70 -    378907 TGGGGAGACCCACCGGGCCCTGCAGGGGGCCATGGAGAAGCTGCAGGTGAGTAGGTCCTGGCATGGGCCA
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26              50404027 70 -  58131712 TGGGGAGAGCTACCGGGCCCTGTAGGAGGCCATGGAGAAGGTGAAGGTGAGTGAGTCCTGGCATGGGCCA
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1      3777888 69 -   4111199 TGGGGAGACCCACC-AGCCCTGCAGTGGGCCATGGAGAAGCTGCAGGTGAGTAGATCCTGGCATGGGCCA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113862707 66 - 132174527 TGGGGAGACCAATCAGGCACTGCAGGGAGCCATAGAGAAGCCGCAG----GTGAGTCCTGGCATAGGCCA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       115439 70 -   1024465 TGGGGAGACCCAGCGGGCCCTGCAGGGTGCCATCGCCAAGCTGCAGGTGAGTGAGTCCTGGCAGGGGCCA
i cebCap1.NW_016107979v1    I 132 I 32
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012105520v1       338706 3583 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102131804 45709 + 121039945 I

a score=20498.000000
s hg38.chr15_KI270850v1_alt     90722 43 +    430880 ACAAGGGGGGCGGGGG------GGCAGGACAAGGCAGGTGACTCCTGAC
s panTro5.chr15              17327934 43 -  83230942 ACAAGGGGGGCGGGGG------GGCAGGACAAGGCAGGTGACTCCCGAC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        13890 49 -    378907 ACAAGCGGGGCGGAGGGGGGGTGGCAGGACAAGGCAGGTGATTCCTGAC
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26              50404097 38 -  58131712 AGAAAAGTGGGGGTGG------GGCAGGA-----CAGGTCACTCCCATG
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1      3777957 34 -   4111199 AGAAGGGTGGGGGCGG------GGCA---------AAGTGGCTTCTGAG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113862773 33 - 132174527 AGAAGGGTGGGGGCAG------GGC----------AGGTCACTGCTGAG
i calJac3.chr10             C 0 C 0
e cebCap1.NW_016107979v1       115509 32 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012105520v1       338706 3583 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102131804 45709 + 121039945 I

a score=124945.000000
s hg38.chr15_KI270850v1_alt     90765 80 +    430880 ATGTGACCCCATTATTTTGGCTCCACAGCGACTTTATG--------GAAGGAGAAGGTGGACCTGAAGGAGCGGGTAGAGAAACTAGA
s panTro5.chr15              17327977 80 -  83230942 ATGTGACCCCATTATTTTGGCTCCACAGCGACTTTATG--------GAAGGAGAAGGTGGACCTGAAGGAGCGGGTAGAGAAACTAGA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        13939 80 -    378907 ATGTGACCCCATTATGTTGGCTCCACAGTGACTTTATG--------GAAGGAGAAGGTGGACCTGAAGGAGCGGGTAGAGAAACTAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26              50404135 88 -  58131712 ATGTGACCCTATTATTTTGGTTCCAGAGTGGCTTTATCGCCCTCCCGAGGGAGAAGGTGGACGGGAAGCAGCAGGTGGAGAAACTAGA
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1      3777991 88 -   4111199 ATGTGACCCCATTGTTTTGGCTCCAGAGCGGCTTTATGGAGCTCCTGAAGGAGAAGGTGGACCTGAAGGAGTGGGTGGAGAAACTAGA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113862806 88 - 132174527 ATGTGACCCCATTATTTTTACTTCAGAACAGCTTTATGACCCTCCGAAAGGAGAAGGTGGACCTGAAGGAGCGGGTGGAGAAACTAGA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       115541 88 -   1024465 ATGTGACCCCATTATTTCGGCTCCAGAATGACTTCATGGCCCTCGTGAAGGAAAATGCGGACCTGAAGGAGCGGGTGGAAAAACTAGA
i cebCap1.NW_016107979v1    I 32 I 208
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012105520v1       338706 3583 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102131804 45709 + 121039945 I

a score=22539.000000
s hg38.chr15_KI270850v1_alt     90845 21 +    430880 GCTTCAATTCATCCACCTCTC
s panTro5.chr15              17328057 21 -  83230942 GCTTCAATTCATCCACCTCTC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        14019 21 -    378907 GCTTCGATTCGTCCACCTCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26              50404223 21 -  58131712 GCTTGGATTCATCCATCTCTC
i chlSab2.chr26             C 0 I 1556
s colAng1.NW_012116021v1      3778079 21 -   4111199 GCTTGGATTCATCCACCTCTC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113862894 21 - 132174527 GCTTCTATTCATCAGGCTCTC
i calJac3.chr10             C 0 C 0
e cebCap1.NW_016107979v1       115629 208 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012105520v1       338706 3583 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102131804 45709 + 121039945 I

a score=103104.000000
s hg38.chr15_KI270850v1_alt     90866 179 +    430880 AGGACAGACAGACACCAT-AGGGAGT-------GAGAGGCTAGGGCACCGCTGGGGGGAGCTGCCAGGCCGTCTGAGGGGCCCCAGCATCTGAGCC----------ATGTCCTCCTGCAGGAAAGTACATC------------AGC--CAGGGGGCAGTGTCAGAGACGCAGCACTGGGAGAGGAGGACATCGTCAGGCTGGCCCAGGACC
s panTro5.chr15              17328078 185 -  83230942 AGGACAGACAGACACCAT-AGTGAGTAGTGAGCGAGAGGCTAGGGCACCGCTGGGGG-AGCTGCCAGGCCGTCCGAGGGGCCCCAGCATCTGAGCC----------ATGTCCTCCTACAGGAAAGTACATC------------AGC--CAGGGGGCAGTGTCAGAGACGCAGCACTGGGAGAGGAGGACATCGTCAGGCTGGCCCAGGACC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        14040 170 -    378907 AGGACAGACAGACACCAT-AGTGAGC-------GAGAGGCTAGGGCACCGCTGGGGG-AGCTGCCAGGCCGTCCAAGGGGCCCCAGCATCTGAGCC----------ATG--------CAGGAAAGTACTTC------------AGC--CAGGAGGCAGTGTCAGAGACGCAGCACTGGGAGAGGAGGACATCGTCAGGCTGGCCCAGGACC
i gorGor5.CYUI01015946v1    C 0 C 0
s colAng1.NW_012116021v1      3778100 190 -   4111199 AGGAAAGACAGACACCATGAGTGAGC-------GGGAGGCCAGGGCACTGCAGGGGG-AGCTGCAGAGCTGTCAGAGAGGCCCCAGCATCTGAGCC-----------TGTCCTCCCGCAGGAAAGTACATCGCCCCAGATGGGAGC--CAGGGGGCAGTGCCAAAGATGCGGCACTGGGAGAGGAGGACATCATCAGGCTGGCCCAGGACC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113862915 181 - 132174527 TGAAGAGACAGACACAATGAGTGAGC-------AGGAGGCCAGGGCATGGCAGGGGG-AGCTGCAGGGTGGTCAGAGGGTCCCCAGCGTTTGAGCCTGTGTGAGCCCTGTCCTTTCGCAGGAAAGGACATCAAATCATGTG--AGCAGCAGAGGGCAGTCCCAAAAACCCGGCACCAGGAGAAGGGGGAAA--------------------
i calJac3.chr10             C 0 C 0
e cebCap1.NW_016107979v1       115629 208 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012105520v1       338706 3583 -   1458659 I
e chlSab2.chr26              50404244 1556 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102131804 45709 + 121039945 I

a score=120372.000000
s hg38.chr15_KI270850v1_alt     91045 130 +    430880 AGGAGGAGATGAAGGTAGGGTGTGCAACATCTCGGTGGGGG-----AGGGTGGGGGTGGGTGTGAACGTGCGTGCTGGCACCGGCATGGCAGCTAA-CACCCCTTCCTCCAGGTGAACCTGCAGGAGCTGC-GGGGC
s panTro5.chr15              17328263 132 -  83230942 AGGAGGAGATGAAGGTAGGGTGTGCAACATCTCTGTGGGGGT---GGGGGTGGGGGTAAACGTGAACGTGGGTGCCGGCACCGGCATGGCAGCTAA-CACCCCTTCCTCCAGGTGAACCTGCTGGAGCTGC-AGGGC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        14210 126 -    378907 AGGAGGAGATGAAGGTAGGGTGTGCAACATCTCTGTGGGGG---------TGGGGGTGGGGGTGAACGTGGGTGCCGGCACCGGCATGGCAGCTAA-CACCCCTTCCTCCAGGTGAACCTGCTGGAGCTGC-GGGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s colAng1.NW_012116021v1      3778290 128 -   4111199 AGGAGGAGATGAAGGTACGGTGTGCAACATGTCTGCGGGGG---------TGGGGGTGAGGGTGAACTTGGGCACTGGCACTGGCATGGCTGCTAAGCACCCCTCCCTCCAGGTGAACCTGCTGGAGCTGCAGGGGC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113863096 129 - 132174527 AGCAGGAGATAAATGTAAGGCGAGCAGCATCTCTATGGGGGTGAGGGGGTTGGGAGTGGGCATGAGCATGGGTGCCGGCACCAGCGTGGCAGCTGAGCACCTCTCTCTCCAGCTGGAGCTGCAGAAGCC--------
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       115837 136 -   1024465 AGGAGGGGATGAAGGTAAGGTGTACAACATCTCTGCTGgggtgagggggatgggggtgggcgtgagcgtgggTGCCGGCACCGGCATTGTAGCTGAGCACCCCTATCTCAAGGTGAAGCTGCTGGAGCTGC-AGGGC
i cebCap1.NW_016107979v1    I 208 I 97
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012105520v1       338706 3583 -   1458659 I
e chlSab2.chr26              50404244 1556 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102131804 45709 + 121039945 I

a score=47961.000000
s hg38.chr15_KI270850v1_alt     91175 77 +    430880 AGGTGTTGCAGCTTGTGGGAGACCACAAGGAGGGGCATGGCAAATT-CTGACCATTGCCCAGAACCCTGCTGATGAGC
s panTro5.chr15              17328395 77 -  83230942 AGGTGTTGCAGTTTGTGGGCGACCACAAGGAGGGGCATGGCAAATT-CTGACCATTGCCCAGAACCCTGCTGATGAGC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        14336 77 -    378907 AGGTGTTGCAGCTTGTGGGCGACCACAAGGAGGGGCATGGCAAATT-CTGACCATTGCCCAGAACATTGCTGATGAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s colAng1.NW_012116021v1      3778418 78 -   4111199 AGGTGTTGCAGCTTGTGAGCGACCACAACGAGGGGCACGACAAATTCCTGACCACTGCCCAGAGTCCTGCTGATGAGC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113863225 74 - 132174527 -AGTGTTTCCAATTCTGGGTG---ACAACGAGGGCCATGCCAAATTCCTGGCCACAGCCAATTACCACATTGATGAGC
i calJac3.chr10             C 0 C 0
e cebCap1.NW_016107979v1       115973 97 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012105520v1       338706 3583 -   1458659 I
e chlSab2.chr26              50404244 1556 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6              102131804 45709 + 121039945 I

a score=50457.000000
s hg38.chr15_KI270850v1_alt     91252 48 +    430880 CCACTCTAGGAGCCCCAATAGCCCAGGAGCTTGGGTG-TGCTGACGAGC
s panTro5.chr15              17328472 48 -  83230942 CCACTCTAGGAGCCCCAATAGCCCAGGAGCTTGGGTG-TGCTGACAAGC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        14413 48 -    378907 CTGCTCTAGGAGCCCCAATCGCCCAGGAGCTTGGGTG-TGCTGACAAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177513 49 + 121039945 CTGCTCTAGGAGCCCCAATCCCACAGGAGCTGGGGTGTTGCTGACAAGC
i nomLeu3.chr6              I 45709 C 0
s colAng1.NW_012116021v1      3778496 48 -   4111199 CTGCTCTAGGAGCCCCCATCCCCCAGGAGCTTGGGTG-TGCTGACAAGC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113863299 48 - 132174527 CCACTCCAGGGGCCCCAGCCCCCCAGGAGCTTGGGAC-TGTCAATAAGC
i calJac3.chr10             C 0 C 0
e cebCap1.NW_016107979v1       115973 97 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012105520v1       338706 3583 -   1458659 I
e chlSab2.chr26              50404244 1556 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=122683.000000
s hg38.chr15_KI270850v1_alt     91300 81 +    430880 AGGGTGGTGAGTAGAGCCCTCAGGCGGGGTGGGCAGGCAGGAGCAGGGGAGGCTCACACTGTGCTCAGATTCCCACCCCCC
s panTro5.chr15              17328520 81 -  83230942 AGGGTGGTGAGTAGAGCCCTCAGGTGGGGTAGGCATATAGGAGCAGGGGAGGATCGAACTGTGCTCAGATTCCCACCCCCC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        14461 81 -    378907 AGGGTGGTGAGTAGAGCCCTCAGGCGGGGTGGGCAGGCAGGAGCAGGGGAGGCTCGCACTGTGCTCAGATTCCCACCCCCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177562 81 + 121039945 AGGGTGGTGGGTTGAGCCCTCAGGTGGGGTGGGCAGTCAGGAGCAGGGGAGGCTCCCACTGTGCTCAGATTCCCACCCCCC
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012116021v1      3778544 77 -   4111199 AGGGTGGTGAGTAGAGCGCTCAGGCGGGGTGGGCAGGCAGGAGCAGGGGCGGCTCGCACTGAGCTCAGATCCCCTCC----
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113863347 76 - 132174527 AGGGTGGTGAGTGGAGCCCTCAGGCAGAGTGGGCAGGCAGGAGCAGGGGAGACTCACCCTGAGCTGAGATCCCCAC-----
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       116070 81 -   1024465 AGGATGGTGAGTAGAGCCCTCAGGCGGGGTGGGCATTCAGGAGCAGGGGAGGCTGGCATTGTACTCAGATCCCCACCTCCC
i cebCap1.NW_016107979v1    I 97 I 8194
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012105520v1       338706 3583 -   1458659 I
e chlSab2.chr26              50404244 1556 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=203414.000000
s hg38.chr15_KI270850v1_alt     91381 186 +    430880 CTCCCTCTCTCTGAAGATCTTTGTGAGGTGAGCCTCACTGATAGCGTGGAGGCTGCACCAGGAGAGGACAGGGAGGGTTCTCCCCACGACAACCCCACTGCACAGCAGATCCAGCAGCTGCTTCCTGTAATGCAGGACTCCCCAGGAGCACCCAGGCATGG--------------------------------------GCAGCAACCCCTGCATGCCATTCTT
s panTro5.chr15              17328601 185 -  83230942 -TCCCTCTCTCTGAAGATCTTTGTGAGGTGAGCCTCACTGATAGCGTGGAGGCTGCACCAGGAGAGGACAGGGAGGATTCTCCCCACGACAACCCCACTGCACAGCAGATCCAGCAGCTGCTTCCTGTAATGCAGGACTCCCCAGGAGCACCCAGGCATGG--------------------------------------GCAGCAACCCCTGCATGCCATTCTT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        14542 186 -    378907 CTCCCTCTCTCTGAAGATCTTTGTGAGGTGAGCCTCACTGATAGCGTGGAGGCTGCACCAGGAGAGGACAGGGAGGGTTCTCCCCACGACAACCCCACTGCACAGCAGATCCAGCAGCTGCTTCCTGTAATGCAGGACTCCCCAGGAGCACCCAGGCATGG--------------------------------------GCAGCAACCCCTGCATGCCATTCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177643 223 + 121039945 -TCCCTCTCTCTGAAGATCTTTATGAGGTGAGCCTCACTGATAGCGTGGAGCCTGCACCAGGAGAGGACAGGGGGGGTTCTCCCCATGACAACCCCACTGCACAGCAGATCCAGCAGCTGCTTTCTGTAATGCAGGACTCCCCAGGAGCACCCAGGCTTGGCTGGAGAAGCTGTTGGTACAGGAGAGGCGGCAGGAGGAGCAGGAGAGGCTGCATGCCATTCTT
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012116021v1      3778621 185 -   4111199 -TTTCTCTGTCTGAAGATCTTCGTGAGGTGAGCCTCACTGACAGTGTGGAGCCTGCACCAGGAGAGGCCAGAGAGGGTTCTCCCCACGACAACCCCACTGCACAGCGTATCGTGCAGCTGCTTCCTCTAACGCAGGACTCTCCAGGAGCACCGAGGCTTGG--------------------------------------GCAGCAATCCCTGCATGCCATTCTT
i colAng1.NW_012116021v1    C 0 I 4105
s calJac3.chr10             113863423 182 - 132174527 CTCCCTCTCTCCAAAGATCTTTGTGAGGTGAGCCTCGCAGATGGCATGGAGCCTG---CAAGAGACGCCAGGGAGGGTTCTCCCCAGGACAACCCCACTGTAGGAAACATCCTGCAGCCGCTTTGTGAAATG-AAGACCTTCCAGAAGCACCCAGGCTTGG--------------------------------------GCTGCAACCCCTATGTGCCATTGTT
i calJac3.chr10             C 0 C 0
e cebCap1.NW_016107979v1       116151 8194 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012105520v1       338706 3583 -   1458659 I
e chlSab2.chr26              50404244 1556 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=24133.000000
s hg38.chr15_KI270850v1_alt     91567 34 +    430880 --TTTGGGCTCCCAAGAACAGGGAGATAAACACCAC
s panTro5.chr15              17328786 34 -  83230942 --TTTGGGCTCCCAAGAACAGGGAGATAAACACCAC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        14728 34 -    378907 --TTTGGGCTCCCAAGAACAGGGAGATAACCACCAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177866 34 + 121039945 --TTCGGGCTGCCGAGAACAGGGAGATAAACATCAC
i nomLeu3.chr6              C 0 C 0
s calJac3.chr10             113863605 36 - 132174527 TTACCGGGCTGCCAAGAACAGGGAGAACAGCATCAC
i calJac3.chr10             C 0 I 648
e cebCap1.NW_016107979v1       116151 8194 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1      3778806 4105 -   4111199 I
e manLeu1.NW_012105520v1       338706 3583 -   1458659 I
e chlSab2.chr26              50404244 1556 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=3915.000000
s hg38.chr15_KI270850v1_alt     91601 8 +    430880 CATCATCT
s panTro5.chr15              17328820 8 -  83230942 CATCATCT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        14762 8 -    378907 CATCATCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177900 8 + 121039945 CATCATCG
i nomLeu3.chr6              C 0 C 0
e calJac3.chr10             113863641 648 - 132174527 I
e cebCap1.NW_016107979v1       116151 8194 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1      3778806 4105 -   4111199 I
e manLeu1.NW_012105520v1       338706 3583 -   1458659 I
e chlSab2.chr26              50404244 1556 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=9345.000000
s hg38.chr15_KI270850v1_alt     91609 9 +    430880 GAGAGCCGG
s panTro5.chr15              17328828 9 -  83230942 AAGAGCCGG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        14770 9 -    378907 AAGAGCCAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177908 9 + 121039945 AAGAGCTGG
i nomLeu3.chr6              C 0 N 0
s chlSab2.chr26              50405800 9 -  58131712 GAGGGCTGG
i chlSab2.chr26             I 1556 C 0
s colAng1.NW_012116021v1      3782911 9 -   4111199 GAGGGCCGG
i colAng1.NW_012116021v1    I 4105 C 0
e calJac3.chr10             113863641 648 - 132174527 I
e cebCap1.NW_016107979v1       116151 8194 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012105520v1       338706 3583 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=201752.000000
s hg38.chr15_KI270850v1_alt     91618 249 +    430880 GAAGGGGAAGGCGTAGGTGTGGGCGTGGC-AAGGTTCCTGGAAAAGAGGGGCTGGAAGGGAAAGGGGAGGAAGATGGAGGGAGAAGCTAGAGCTTCATAGGTAGTGCCTGGGGGCTGTGGCGG-TCCTCCCCACCCCACACACACTGGCCTCTCTCATGGCACCCAGGCAGTCCACCCACAGTTCAGACCAATGCTCAACTCCCCC-GGCTTCCCTCTTCTGTGGTCACCCCATCTTCCAACCCACTGGCCC
s panTro5.chr15              17328837 249 -  83230942 GGAGGGGAAGGCGTAGGTGTGGGCGTGGC-AAGGTTCCTGGAAAAGAGGGGCTGGAAGGGAAAGGGGAGGAAGATGGAGGGAGAAGCTGGAGCTTCATAGGTAGTGCCTGGGGGCTGCGGCGG-CCCTCCCCACCCCACACACACTGGCCTCTCTCATGGCACCCAGGCAGTCCACCCACAGTTCAGACCAATGCTCAACCCCACC-GGCTTCCCTCTTCTCTGGTCACCCCATCTTCCAACCCACTGGCCC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        14779 249 -    378907 GGAGGGGAAGGCGTAGGTGTGGGCGTGGC-AAGGTTCCTGGAAAAGAGGAGCTGGAAGGGAAAGGGGAGGAAGATGGAGGGAGAAGCTGGAGCTTCATAGGTAGTGCCTGGGGGCTGTGGCGG-CCCTCCCCACCCCACACACACTGGCCTCTCTCATGGCACCCAGGCAGTCCACCCACAGTTCAGACCAATGCTCAACCCCCCC-GGCTTCCCTCTTCTCTGGTCACCCCATCTTCCAACCCACTGGCCC
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26              50405809 249 -  58131712 GGAGGGGAGGGCGCAGGTGCGGGTGTGGCAAAGGTTCCTGGAAAAG--GGGCTGGAAGGGAAAGGGGAGGAAGATGGAGGGAGGAGCCGGAGCTTCACAGGTAGTGCCTGTGGACTGCGGTGGCCCCTCCCCAGCCCACACACGCTGGCCTCACCCATGGCACCCAGGCAGTGCACCCACAGTTCAGACCAATGCTCAGCCCCCTTGGGCTTCTCTCTTCTCTGGTCACCCTGTCTTCCAACCCACTGGCC-
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1      3782920 249 -   4111199 GAAGGGGAGGGTGTAAGTGTGGGCATGGC-AAGGCTCCTGGAAAAGACAGGCTGGAAGGGAAAGGGGAGGAAGATGGAGGGAGAAGCCAGAGCTTCATAGGTAGTGCCCGGGGGCTGTGGCGG-CCCTCCCCACGCCACACACGCTGGCTTCTCTCATGGCACCCAGGCAGTCCACCCACAGTTCAGACCAATGC-CAGCCCACTTGGGTTTCCCTCTTCTCTGGTCACCCTGTCTTCCAACCCACTGGCCC
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10             113863641 648 - 132174527 I
e cebCap1.NW_016107979v1       116151 8194 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e manLeu1.NW_012105520v1       338706 3583 -   1458659 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=98494.000000
s hg38.chr15_KI270850v1_alt     91867 85 +    430880 AGGGCCACCTCTTGCTTGGGGAGCCCCACCCAACAGCCACCAAGCCT---GACAGAAGGAACACTGCTTGAACCAAAATGGTGAAGCT
s panTro5.chr15              17329086 85 -  83230942 AGGGCCACCTCTTGCTTGGGGAGCCCCACCCAACAGCCACCAAGCCT---GACAGAAGGAACACTGCTTGAACCAAAATGGTGAAGCT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        15028 85 -    378907 AGGGCCACCTCTTGCTTGGGGAGCCCCACCCAACAGCCACCAAGCCT---GACAGAAGGAACACTGCTTGAACCAAAATGGTGAAGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26              50406058 83 -  58131712 AGGGCTACCTCTTGCTTGGGGAGCCCCACCCAACTGCCACCTGGCCT-----GATAAGGAACACTGCTTGAACCAAAATGGTGAAGCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       342289 87 -   1458659 AGGGCCACCTCTTGCTTGGGGAGCGCCACCCAACAGCCACCACTCCTC-ATAGAGAAGGAACACTGCTTGAAACAAAATAGTGAAGCT
i manLeu1.NW_012105520v1    I 3583 C 0
s colAng1.NW_012116021v1      3783169 88 -   4111199 AGGGCCACCTCTTGCTTGGGGAGCCCCATCCAACAGCCACCCAGGCTTGATAGAGAAGGAACACTGCTTGAAACAAAATGGTGAAGCT
i colAng1.NW_012116021v1    C 0 M 1445
e calJac3.chr10             113863641 648 - 132174527 I
e cebCap1.NW_016107979v1       116151 8194 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=302033.000000
s hg38.chr15_KI270850v1_alt     91952 381 +    430880 GTAA-GGGATGGCTGGCTGGAGTGAGCGCCAGAGGCCCCTCTCTGGGCAGTCAGAAAGCCCAGGGTCCACTGAAGGGACCCTGGGGAAGGCAGGGAGGGCAGGTAGCTAGATGCCACTGCCCATAGACTTATAAGTC-TAAGAGGGGAACCTCAACTGGTTGGCGGGGG-----GCTGCAGGTTGCATAGGTGAGGCTGGGCCCTTCCTGCTGGGAAAAGCAGAAGAGGGAGACTCCGCGGCAGGAAAGGCAGGTGGGCTCGCTAGGCGGAGCTCAGCTGGGCCAGCAAGCACTGTGGTCTCCTTGGCTGAATAGCACAGGTGACCCCTAGGAGCAACAGGCCAAGGTCCGTGAGCCTGCTGGCTGGCAGTAGTGCTTCAGTAGTGCT
s panTro5.chr15              17329171 381 -  83230942 ATAA-GGGATGGCTGGCTGGAGTGAGTGCCAGAGGCCCCTCTCTGGGCAGTCAGAAAGCCCAGGGTCCACTGAAGGGACCGTGGGGAAGGCAGGGAGGGCAGGTAGCTAGATGCCACTGGCCATAGACTTATAAGTC-TAAGAGGGGAGCCTCAACTGGTTGGCGGGGG-----GCTGCAGGTTGCATAGGTGAGGCTGGGCCCTTCCTGCTGGGAAAAGCAGAAGAGGGAGACTCCGTGGCAGGAAAGGCAGGTGGGCTTGCTAGGCGGAGCTCAGCTGGGCCAGCAGGCACTGTGGTCCCCTTGGCTGAATAGCACAGGTGACCCCTAGGAGCAACAGGCCAAGGTCCGTGAGCCTGCTGGCTGGCAGTAGTGCTTCAGTAGTGCT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        15113 381 -    378907 ATAA-GGGATGGCTGGCTGGAGTGAGCGCCAGAGGCCCCTCTCTGGGCAGTCAGAAAGCCCAGGGTCCACTGAAGGGACCCTGGGGAAGGCAGGGAGGGCAGGTAGCTAGATGCCACTGGCCATAGACTTATAAGTC-TAAGAGGGGAGCCTCAACTGGTTGGCGGGGG-----GCTGCAGGTTGCATAGGTGAGGCTGGGCCCTTCCTGCTGGGAAAAGCAGAAGAGGGAGACTCCGTGGCAGGAAAGGCAGGTGGGCTCGCTAGGCGGAGCTCAGCTGGGCCAGCAAGCACTGTGGTCTCCTTGGCTGAATAGCACAGGTGACCCCTAGGAGCAACAGGCCAAGGTCCGTGAGCCTGCTGGCTGGCAGTAGTGCTTCAGTAGTGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26              50406141 382 -  58131712 ATAA-GGGATGGATGGCTGGAGTGTGTGCCAGAGGCCC--CTCTGGGTGGTCAGAAAGACCAGGGTCCTCTGAAGGGAGCCTGGGGAAGGCAGGGAGGGCAGGTAGCTGGATGCCACTGGCCATAGACTTGTAAGTCTTAAGAGGGGAGCCTCAGCTGGTTGCCAGGTGGGAATGCTACAAGTTTCGTAGGTGAGGCTGGGCCCTTCCTGCTGGGAAAAGCAGAAGAGGGAGAGTCCATGGCAGGAGAGGCAGGTGGGCTCGCTAGGCGGAGGTCAGCTGGGCCAGCAGGCACTGTGGTCCCCTTGGCTGAATAGCACAGGAGACCCCTAGAAGCAACAGGCCAAGTTGTGTGAGCCCGCTGGCCTGTGGTAATGCTTCAGCGG---G
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       342376 376 -   1458659 ATAAGGGGATGGCTGGCTGGAGTGAGCATCAGAGGTCC--CTCTGGGTGGGCAGAAAGCTCAGGGTCCTCTGAA-GGACCCTGGGGAAGGCTGGGAGGGCAGGTAGCCGGATGCCACCGGCCATACAGTTATAAGTC-CAAAAGGGGAGCCTCAACTGGTAGGCAGGGG-----GCTGCAGGTTGCATAGGTGAGGCTGGGCCCTTTATGATGGGAAAAGCAGAAGAGGGAGAGTCCGTGGCAGGACAGGCAGGTGGGCTCGCTAGGCAGGATTTGGCTGGGCCAGCAGGCACTGTGGTCTCCTTGGCTGAATAGCACAGGAGACCCCTAGGAGCAACAGGCCAAGGTGAGTGAGCCTGCTGGTCGGCGGTAGTGCTTCAGCGG---G
i manLeu1.NW_012105520v1    C 0 C 0
e calJac3.chr10             113863641 648 - 132174527 I
e cebCap1.NW_016107979v1       116151 8194 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1      3783257 1445 -   4111199 M
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=250719.000000
s hg38.chr15_KI270850v1_alt     92333 215 +    430880 GGCCAGGGACCCAGCCTTCAGTCACATGCTAGCAGCTGTGATGGTACCTGGGAGGGAGGGAAGGGGGCTGTGTGTCCTTGCATGGCCTATGAAGTGTGTTGTGGGATGACCGCGTGTATAGGACTCTCAGGCTTTTATCCTAGATCACCACTGG---ATTGCTGACAGATAGAGGACGTGGGACCGTGACTATCACCCCTAATCTGCAGTGGATTTGG
s panTro5.chr15              17329552 215 -  83230942 GGCCAGGGACCCAGCCTTCAGTCACACGCTAGCAGCTGTGATGGTACCTGGGAGGGAGGGAAGGGGGCTGTGTGTCCTTGCATGGCCTATGAAGTGTGTTGTGGGATAACCGTGTGTATTGGACTCTCAGGCTTTTATCCTAGATCACCACTGG---ATTGCTGACAGATAGAGGAGGTGGGACCCTGACTATCACCCCTAATCTGCAGTGGATTTGG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        15494 215 -    378907 GGCCAGGGACCCAGCCTTCAGTCACACGCTAGCAGCTGTGATGGTACCTGGGAGGGAGGGAAGGGGGCTGTGTGTCCTTGCATGGCCTATGAAGTGTGTTGTGGGATAACCGTGTGTATTGGACTCTCAGGCTTTTATCCTAGATCACCACTGG---ATTGCTGACAGATAGAGGAGGTGGGACCCTGACTATCACCCCTAATCTGCAGTGGATTTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26              50406523 215 -  58131712 GGCCAGGGACCCTGCCTTTGGTCACATGCTAGCAGCTATGATGGTACCCGGGAGGATGGGAAGTGGGCTGTGTGTCCCTGCCTGGCCTGTGAGGTGTGTTGTGGGATGACCATGTGTATGGGACTCTTAAGGTTTTATCCTAGATCATCACTGG---ATTGCTGACAGATAGAGGAGGTGGGACCCTGACTATCACCCCTGCTCTGCAGTGGATTCGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       342752 214 -   1458659 GGCCAGGGACCCTGCCTTCAGTC-CACACTAGCAGCTATGATGGTACCTGGGAGGGAGGGAAGGGGGCTGTGTGTCCCTGCCCGGTCTGTGAAGTGTGTTGTGGGATGACCGTGTGTATGGGACTCTCAGGCTTTTATCCTCGATCACCACTGG---ATTGCTGACAGTTAGAGGATGTGGGACCCTAACTATCACCCTTAATCTGCAGTGGATTTGG
i manLeu1.NW_012105520v1    C 0 C 0
s calJac3.chr10             113864289 214 - 132174527 GGCCAGGGACCT-GCCTTCAGTCACAGACTAGCAGCTATAATGGCACCTGGGAGGGAGGGAAGAAAGCTGTGTGTCC-TGCCTGGCCTGTGAGGTGTGTTGTGGGATGACTGTGTGTATGGGACTCTCCAGCTTTTACCCGAGATCATCACTGGATTATTACCAGCAGATAGAGGAGATGGGACCCTGACTAGCACC--TGTTCTGCAGTGGATTTGG
i calJac3.chr10             I 648 C 0
e cebCap1.NW_016107979v1       116151 8194 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1      3783257 1445 -   4111199 M
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=449391.000000
s hg38.chr15_KI270850v1_alt     92548 554 +    430880 CTCTCGGCACTCCCAGGCTGGGAGCTGGATA-CCTGCCCTGGCAGCATGACTCAGACTGCATGACAGGTACGGCGTGCCCAGGATGATGTGCCCAGGCCTCTGGCCGCCT--GAGTCCAGCCCCCCACACAACCCCCTCCAAGCTCCCAGCCCCTACACCATAAACCATGAGCTCTGTGCCCTCTCTGATGGTTCCACA-----------TCTGCCACCTTCGGCATGGAGCCTGTTGTAAGAGCCCCCAGGCTCAGCCATGGAGACCTTGAGCAGTGGCACTGAGTCCTGTGGCTGGCAGGG-AGGGAAGTGAGACAGCCAGCAGCACAAGGACAGAAAGAGGAAAGAGCAAGGCTGCAGCTCTAGAAGGGAGGGGCAGGCAGCCTGGCTCTGAGGCTCCAGGTATGCCCCCTGTGTGGAGCTGGGGCAGCGGGGCGGGCAGACCATTCATGCAGCAGGCAGTGAGGCATGTACCTACCATGGCTGATGCTCCTCAGGGGCCACTGATAGTGATTCTGAAAGACAGCATCAAATC-ACATGGCAGGTCCCATGCATGGGTGGGGCAGGC
s panTro5.chr15              17329767 554 -  83230942 CTCTCGGCACTCCCAGGCTGGGAGCTGGATA-CCTGCCCTGGCAGCATGGCTCAGACAGCATGACAGGTACGGCGTGCCCAGGATGATGTGCCCAGGCCTCTGGCCGCCT--GAGTCCAGCCCCCCACACAACCCCCTCCAAGCTCCCAGCCCCTACACCATAAACCATGAGCTCTGTGCCCTCTCTGATGGTTCCACA-----------TCTGCCACCTTGGGCATGGAGCCTGTTGTAAGAGCCCCCAGGCTCAGCCATGGAGACCTTGAGCAGTGGCACTGAGTCCTGTGGCTGGCAGCG-AGGGAAGTGAGACAGCCAGCAGCACAAGGACAGAAAGAGGAAAGAGCAAGTCTGCAGCTCTAGAAGGGAGGGGCAGGCAGCCTGGCTCTGAGGCTCCAGGTATGCCCCCTGTGTGGAGCTGGggcagcagggcaggcagaccattcatgcagcaggcagtgaggcaTGTACCTACCATGGCTGATGCTCCTCAGGGGCCATTGATAGTGATTCTGAAAGACAGCATCAAATC-ACATGGCAGGTCACATGCATGGGTGGGGCAGGC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        15709 556 -    378907 CTCTCGGCACTCCCAGGCTGGGAGCTGGATA-CCTGCCCTGGCAGCATGGCTCAGACAGCATGACAGGTACGGCGTGCCCAGGATGATGTGCCCAGGCCTCTGGCCGCCTCAGAGTCCAGCCCCACACACAACCCCCTCCAAGCTCCCAGCCCCCATACCATAAACCATGAGCTCTGTGCCCTCTCTGATGGTTCCACA-----------TCTGCCACCTTGGGCATGGAGCCTGTTGTAAGAGCCCCCAGGCTCAGCCATGGAGACCTTGAGCAGTGGCACTGAGTCCTGTGGCTGGCAGGG-AGGGAAGTGAGACAGCCAGCAGCACAAGGACAGAAAGAGGAAAGAGCAAGTCTGCAGCTCTAGAAGGGAGGGGCAGGCAGCCTGGCTCTGAGGCTCCAGGTATGCCCCCTGTGTGGAGCTGGGGCAGCGGGGCAGGCAGACCATTCATGCAGCAGGCAGTGAGGCATGTACCTACCATGGCTGATGCTCCTCAGGGGCCACTGATAGTGATTCTGAAAGACAGCTTCAAATC-ACATGGCAGGTCACATGCATGGGTGGGGCAGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26              50406738 566 -  58131712 CTCTCGGCACTCCCAGGCTGGGAGCTGGATGCCCTGCCCTGGCAGCATGACTCAGACTGCACGACCGGTATGGCGTGTCCAGGATGACGTTCCTAGACCTCTGGCCTCCTCAGAGTCCAGCCC--CACACAACGCCCTCCAAGCTCCCAGCCCCTACACCATAAACCATGAGCTCTATGCCCTCTCTGATGGCTCCAGAGAGCACCCATGTCTGCCAGTTTGGGCATGGAGCCTGTTCCAAGAGCACCCAGGCTCAGCCATGGAGGCCATGGGCAGTGGTGCTGAGTCCCATGGCTCACAGGGAAGGGAGGTGACAGAGCCA-CAGCATGAGGACAGAAAGAGGAAAGAGCAAATCTGCAGCTCCAGAAAGGAGGGGCAGGGATCCTGGATCTGAGGTCCCAGGTGTG-CCCCCGTGTGGAGCTGGTGCAGTGGGGCGGGAACACCATTCATGCAGCAGGCGGCAAGCCATGTACCTACCATGGCTGATGCTCCTCAGGGGCCACTGATAGTGATTCTGAAAGACAGCATCAAATCAACATGGCAGCTCACATGCATGGGTGGGGCAGGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       342966 555 -   1458659 CTCTCAGCACTCCCAGGCTGGGAGCTGGATACCCTGCCCTGGCAGCATGACCCAGACTGCATGACAGGTACAGCGTGCCCAGGATGATGTGCCTAGACCTCTGACTGCCTCAGATTCCAGCCCCACACACAACCCCCTCCAAGCTCCCAGCCCCTACACCATAAACCACGAGCTCTGTGTCCTCTCTGATGGCTCCACA-----------TCTGCCAGCTTGGGCATGGAGCCTGTTCTAAGAGCCCCCAGGCTCAGCCATGGAGGCCTTGAGCAGTGACACTGAGTCCCATGGCTCGCAGGG-AGGGAGGTGAGACAGCCAGCAGCACAAAGACAGAAAGAGCAAAGAGCAAGTCTGCAGCTCCAGAAGGGAGGGGCAGGGAGCCTGGCTCTGAGGTCCCCGGTATGCCCCCCATGTGGGGCTGGGGCAGCGGGGCAGGCAGACCTTTCATGCAGCAGGCAGCAAAGCATGTACCTACCAAGGCTGACGCTCCTCAGGTAACACCGATAGTGATTCTGAAAGACAGCATCAAATC-ACATGGCAGGTCACACGCAT-GGTGGGGC-GGC
i manLeu1.NW_012105520v1    C 0 C 0
e calJac3.chr10             113864503   0 - 132174527 C
e cebCap1.NW_016107979v1       116151 8194 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1      3783257 1445 -   4111199 M
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=125890.000000
s hg38.chr15_KI270850v1_alt     93102 148 +    430880 CTGGGGGTGGCGG----ACACACGCACACGCCAGATTGTGCACACACATGCTGTGAGGCCCCACGGCCCGCATGCACACTCT-A--ACACATGCCCACAAACAACACG---CATACGTCGCCCTCTCCGCCACCTCCCGGTGCCCAACACCCTCACCA
s panTro5.chr15              17330321 149 -  83230942 CTGGGGGTGGCGG----ACACACGCACACGCCAGATTGTGCACACACATGCTGTGAGGCCCCACAGCCCGCATGCACACTCTTA--ACACATGCCCACAAACAACACG---CATACGTCGCCCTCCCCGCCACCTCCCAATGCCCAGCACTCCCACCG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        16265 145 -    378907 CT-GGGGTGGGGG----ACACACACACACGCCAGATTGTGCACACACGTGCTGTGAGGCCCCACGGCCCTC--TAACACTCT-A--ACACATGCCCACAAACAACACG---CATACGTCGCCCTCCCCGCCACCTCCCGGTGCCCAGCACCCTCACCG
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26              50407304 150 -  58131712 CTGGGGTTGGGGGACACACACACGCACATGCTGGGGTGCGCACACACATGCTATGAGGCCCCACTGCTGGCATGGCCACACT-AACACACATACCCAC----AACACG---CATACGCCTCCTTCCCTGCCACCTCCCAGTGCCCAGCATCCTCACTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       343521 139 -   1458659 CTGAGGGTGGGGG--ACACACACGCACACGCCGGAGTGTGCACACACATGCTGTGAGGCCCCACTGCCTGCATACACACACT-AACACACATGCCCACAAAAAACACG---CATACGCTGCCTTCCC-------------CGCCCAGCACCCTCATTG
i manLeu1.NW_012105520v1    C 0 C 0
s calJac3.chr10             113864503 149 - 132174527 CTGGAGG----GG----ACACATGCAAACATCCAGGTGTGCACACATGCATTGTGAGGCCCCATGGCCCGCATGCACATGCT-AACACACATGCCCACAAACACCACAAACAATACACCTCCTTCCCTTCCACCTCCTGGTGCCCAGCACCCTCACTG
i calJac3.chr10             C 0 C 0
e cebCap1.NW_016107979v1       116151 8194 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e colAng1.NW_012116021v1      3783257 1445 -   4111199 M
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=604029.000000
s hg38.chr15_KI270850v1_alt     93250 372 +    430880 GCCGGCACGTGCCGCATGGATCTGGGGCGTGCAGCCACTCGGCACACTGAAGCACATGCGTGGGCAGAGTCACAACACAGATGCTCACCCGCACACAGAGGCATTTGCACCAGCTCCCTGCACACTCGTGCCTGGCGTGCTCAGAGGACCACCCATCCTGCTCAGGGAGACAGGGCTTGCTCACTAATGTCCGGCTGTCATTTCTCCACCTAAGAGCCTTCCATGGCTCCCTACTGCCTACAGCGTTGAATCCCAACAAGTCATACTCTTTGGACTTTGAAGGTTCTCCACCCTGTGCCCCACCCTCCCCACAGAGCTCTTCCTCATTCTGTCTCTGTTCCCTGCTTTGGCCAGTGGCTATCCTCAATGTGA
s panTro5.chr15              17330470 371 -  83230942 GCCAGCACGTGCCGCATGGATCTGGGGCGTGCAGCCACTCGGCACACTGAAGTACATGCGTGGGCAGAGTCACAACACAGATGCTCACCCGCACACAGAGGCATTTGCACCAGCTCCCTGCACACTCGTGCCTGGCGTGCTCAGAGGACCACCCATGCTGCTCAGGGAGACAGGGCTTGCTCACTAATGTCCAGATGTCATTTCTCCACCTAAGAGCCTTCCATGACTCCCTACTGCCTACAGCGTTGAATCCCA-CAAGTCATACTCTTTGGACTTTGAAGGTTCTCCACCCTGTGCCCCACCCTCCCCACAGAGCTCTTCCTCATTCTGTCCCCGTTCCCTGCTTTGGCCAGTGGCTATCCTCAATGTGA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        16410 371 -    378907 GCC-GCACGTGCCGCATGGATCTGGGGCGTGCAGCCACTCGGCACACTGAAGCACATGCGTGGGCAGAGTCACAACACAGATGCTCACCCGCACACAGAGGCATTTGCACCAGCTCCCTGCACACTCGTGCCTGGCGTGCTCAGAGGACCACCCATGCTGCTCAGGGAGACAGGGCTTGCTCACTAATGTCCAGCTGTCATTTCTCCACCTAAGAGCCTTCCATGGCTCCCTACTGCCTACAGCGTTGAATCCCAACAAGTCATACTCTCTGGACTTCGAAGGTTCTCCACCCTGTGCCCCACCCTCCCCACAGAGCTCTTCCTCATTCTGTCCCTGTTCCCTGCTTTGGCCAGTGGCTATCCTCAATGTGA
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26              50407454 370 -  58131712 GCTGGCACGTGCAGCACAGATCTGGGGCGTGCAGCCACTTGGCACACTGAAGCACACACATGGGCAGAGTCACAACACAGAAGCTCACCCACACACAGAGGCATTTGCACCAGCTCCCTGCACACCCAT-GCTGGCATGCTCAGAGGACCATCCATGCTGCTCATGGAGACAGTGCTTGCTTGCTAATGTTCAGCTGCCATTTCTCTACCTAAGAGCCTTCCATGGCTCCCTACTGCCTACAGCTTTGAGCCCCAACAAGTCATACTCTTCGGACTTTGAA-GTTCTCCACCCTATGCCCCACCCTCCCCACAGAGCTCTTTCTCATTCTGTCTCTGTTCCCTGCTTTGGCCAGCGGCTGTCCTCAGTGAGT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       343660 372 -   1458659 GCCGGCCTGTGTCATAAGGATCTGGGACATGCAGCCACTCGGCACACTGAAGCACATGCATGGACAGAGTCACAACACAGATGCTCGCCCGCACACAGAGGCATTTCCATCAGCTCCCTGTACACTTGTCCCTGGTGTGCTCAGAGGACCACCTACGCTGCTCATGGAGACAGGGCTTGCTCAACAATGTCCAGCTGTCATTTCTCCACCTAAGAGCCTTCCATGGCTCCCTACTGCCTACAGCATTGAACCCCAACAAGTCATACTCTTCGGACTTTGAAGGTTCTCCACCCTATGCCCCACTTTCCCCACAGAGCTCTTCCTCATTCTGTCTCTGTTCCCTGCTTTGGCCAGGGGCTATCCTCGATGTGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3784723 362 -   4111199 GCCGGCATGTGCCACATGGATCTGGGACGTGCAGCCAGTCGGCACACTGAAGCACATGCGTGGGCAGAGTCACAACACAGATGCTCGC---CGCACACAGGCATTTGCACCAGCTCCCTGCACACTCCTGCCTGGTGTGCTCAGAGGTCCCCCCACGCTGCTCATGGAGACAGGGCTTGCTCACTAACGTGCAGCTGTCATTTCTCCACCTAACAGCCTTCCATGGCTCCCTACTGCCTACAGCATTGAACCCCAACAAGTCACACTCTTCAGACTTTGAAGGTTCTCCACCCTATGCCCCACCTTCCCCACACAGCTCTTCCTCATTCTGTCTCTGTTCCCTGCTTTGGCCAGGGGCTATCCT-------A
i colAng1.NW_012116021v1    M 1445 C 0
s calJac3.chr10             113864652 367 - 132174527 GCCTGCACATGAAACACAGGTCTGGGGTGTGCAGCTACTCGGTACACTGAAGCACAAGCGTGGGCAGAGTCATGACACAGAAGCACACCCGCACACAGAGGCATTTGAACCAGCTGACTGCCCACGCGTGCCTGGCATGCTCAGAGGACCACCCATGCTGCTCATGGAGACAGGACTTGCTCGCTAATGTCCAGCTGTCATTTCTCCACCTACAAGCCTTCCATGGCTCCCTACTACCTACAGGATTGAGCCCCAACAAGTCAAACTCT--GGACTTTGAAGGTT---CACCCTAGGCCTCACCCTCCCCACAGAGCTCTTCCTCATTCTGTCTCTGTTCCCTGCTGTGGCCAGTGGCTGTCCTCCATGCGG
i calJac3.chr10             C 0 C 0
e cebCap1.NW_016107979v1       116151 8194 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=847103.000000
s hg38.chr15_KI270850v1_alt     93622 393 +    430880 CCCACACTACACCTCTGCCCACACTGCAGCTCTTTACCCAGTTACCCTCCAGTTCCTCACAACGTATGCCTATCTCAGTCATGCCCCGGACTGCATTGAAGCCAGGCTGCCTTGAAGAAGCTCTCCCAGACTGCCCTTTTCCCCAAGGCAGGGTCATGATTTGCCAAAGGTTTCGTGTGTGTGTTAGCAAGACTGGAGTCAGAGCAGGCATCAAACTTTACATCCCATATGTCACACCTCACCATAGACCTGGGTGCCAAATAGCCTGAAGAGTCTGAACTCACGTTGGCAGTTAGCAAAGTGCTCCTACAGCCGCAtctgcggttaacatagcatccctatggccactgtctcccttgatccccacagccatcctaggagaaaggcagaatg
s panTro5.chr15              17330841 393 -  83230942 CCCACACTACACCTCTGCCCACACTGCAGCTCTTTACCCAGTTACCCTCCAGTTGCTCGCCACATATGCCTATCTCAGTCATGCCCCGGACTGCATTGAAGCCAGGCTGCCTTGAAGAAGCTCTCCCAGACAGCCCTTTTCCCCAAGGCAGGGTCATGATTTGCAAAAGGTTTCATGTGTGTGTTAGCAAGACTGGAGTCAGAGCAGGCATCAAACTTTACATCCCATATGTCACACCTCACCATAGACCTGGGTGCCAAATAGCCTGAAGAGTCTGAACTCACGTTGGCAGTTAGGAAAGTGCTCCTACAGCCGCAtctgcggttaacatagcatccctatggccactgtctcccttgatccccacagccatcctaggagaaaggcagaatg
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        16781 393 -    378907 CCCACACTACACCTCTGCCCACACTGCAGCTCTTTACCCAGTTACCCTCCAGTTGCTCGCCACATATGCCTATCTCAGTCATGCCCCGGACTGCATTGAAGCCAGGCTGCCTTGAAGAAGCTCTCCCAGACTGCCCTTTTCCCCAAGGCAGGGTCATGATTTGCGAAAGGTTTCGTGTGTGTGTTAGCAAGCCTGGAGTCAGAGCAGGCATCAAACTTTACATCCCATATGTCACATCTCACCATATACCTGGGTGCCAAATAGCCTGAAGAGTCTGAACTCACGTTGGCAGTTAGGAAAGTGCTCCTACAGCCGCAtctgcagttaacatagcatccctatggccactgtctcccttgatccccacagccatcctaggagaaaggcagaatg
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26              50407824 391 -  58131712 CCCACACTAAACCTCTGTCCACACTGCAGCTCTTTACCCAGATACCCTCCAATTCCTCGTCACATAAGCCTATCTCAGTCATACCCTGGACTCCATTGAAGCCAGGCTGCCTTGAAGAAGCTCTCCCAGACTGCCCTTTTCCCCAAGGCAGGGTCATGACTTGCCAAATGTTT--TGCTTGCATTAGTAAGACTAGAGTTGGAGCAGGCATCAAACCTTACATCCCATATGTCACACCTCACCACAGACCTGGGTGCCAAATACCCTGAAGAGTCTCAACTCACGTTGGTAGTTAGCAAAGTGCTCCTACAGCCGCAtctgcagttaacacagcatccctatgaccactgtctcccttaatccccacagccaccctgggagaaaggcagaaag
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       344032 389 -   1458659 CCCACACTACACCTCTGCCCATG--GCAGCTTTTTACCCAGTTATCCTCCAATTCCTCACCACGTAAGCCTATCTCAGTCATGCCCCGGACTTCACTGAAGCCAGCCTGCCTTGAAGAAGCTCTCCCAGACTGCCCTTTTCCCCAAGGCAGGGTCATGATTTGTCAAATGTTT--AGTGTGTGTTAGCAAGACTGGAGTCGGAGCAGGCATCAAACCTTACATCCCACATGTCACACCTCACCATAGACCTGGGTGCCAAATAGCCTGAAGAGTCTGAACTCACGTTGGCAGTTAGCAAAGTGCTCCTACGGCTGCAtctgcagttaatatagcatttctatggccactgcctccctggatctccacagccatcctaggagaaaggcagaaca
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3785085 372 -   4111199 CCCACACTACACCTCTGCCCATG--GCAGCTTTTTACCCAGTTACCCTCCAATTCCTCACCACGTAAGCCTATCTCAGTCATGCCCCGAGCT-----------------CCTTGAAGGAGCTCTCCCAGACTGCCCTTTTCCCCAAGGTAGGGTCATGATTTGCCAAATGTTT--AGCGGGTGTTAGCAAGACCGGAGTCGGAGCAGGCATCAAACCTTACATCCCACATGTCACACCTCACCACAGACCTGGGTGCCAAATAGCCTGAAGAGTCTGAACTCACGTTGGCAGTTAGCAAAGTGCTCCTACGGCTGCAtctgcagttaacatagcatccctatggccactgtctccctggatctccacagccatcctaggagaaaggcagaaca
i colAng1.NW_012116021v1    C 0 I 1552
s calJac3.chr10             113865019 388 - 132174527 CCCACACTACACCTCTGCCCACACTGCAGCTCTTTATCCAGATACCCTCCAATTCTTTGCCATGTAAGCCTATCTCAGTCATGCCCCAGACCGCAGAGAAGTCAGGCTGCCTTGAAGAAACTCTCCCAGACTGCTCTTTTCCCCAAGGCAGGGCCATGATTTGCGAAACATTT--CATGTGTGTTACCAAGACTGGAGCTGGGGCAGGCATCAAACCTTACATCCCATATGTCACACCTCACCATAGACCTGGGCACCAA---CTCTGAAGAGTCTGAACTCACATCGGCAGTTAGCAAAGTGCtcatatggccacatctactgttaacacagcatccctatggccactgtcttccttgatcttcataaccaccctgggagaaaggcagaaca
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       124345 387 -   1024465 CCCACACTACACCTCTGCCCACACTGCAGCTCTTTACCCAGATACCCTCCAGTTCCTCGCCACGTAAGC----CTCAGTCATGCCCCGGACCACAGTGAAGTCAGGCTGCCTTGAGGAAGCTCTCCCAGACTGCTCTTTTCCCCAAGGCAGGGTCATGATTTGCCACATGTCT--CCTGGGTGTCAGTGAGACTGGAGTCGGAGCAGGCATCAAACCTTACCTGCCATATGTCACACCTCATCATAGACCTGGGCGCCAAATGCCCTGAAGAGTCTGAACTCACATTGGCAGTTAGCATGGTGCCCCTACGGCTGCAtctgcagttaacacagcacccctgtggccactgtctcccttgatccccacaaccaccctgggagaaaggcagaacg
i cebCap1.NW_016107979v1    I 8194 C 0
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=7011.000000
s hg38.chr15_KI270850v1_alt     94015 5 +    430880 tcata
s panTro5.chr15              17331234 5 -  83230942 tcata
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        17174 5 -    378907 tcata
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26              50408215 5 -  58131712 aaatc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       344421 5 -   1458659 tcatc
i manLeu1.NW_012105520v1    C 0 I 1690
s colAng1.NW_012116021v1      3787009 5 -   4111199 tcatc
i colAng1.NW_012116021v1    I 1552 C 0
s calJac3.chr10             113865407 5 - 132174527 tcatc
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       124732 5 -   1024465 tcatc
i cebCap1.NW_016107979v1    C 0 C 0
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=198683.000000
s hg38.chr15_KI270850v1_alt     94020 84 +    430880 atttgctaaaagggatgctgaggctctgggagggaaagggacttgcctaaagccccagggtgaagcagcatctctggactccca
s panTro5.chr15              17331239 84 -  83230942 atttgctaaaagggatgctgaggctctgggagggaaagggacttgcctaaagccccagggtgaagcagcatctctggactccca
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        17179 84 -    378907 atttgctaaaagggatgctgagggtctgggagggaaagggacttgcctaaagccccagggtgaagcagcatctctggactccca
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26              50408220 84 -  58131712 atttgatagaaaggatgctgaggctctggaagggaaagggacttgcctgaagtcCAAGGGTGAAGCAGCATCTCTGGACTCCCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       346116 84 -   1458659 atttgatagaagggatactgaggctctgggagggaaagggacttgcctaaagccccagggtgaagaagcatctctggactccca
i manLeu1.NW_012105520v1    I 1690 C 0
s colAng1.NW_012116021v1      3787014 84 -   4111199 atttgatagaagggatactgaggctctgggagggaaagggacttgcctaaagccccagggtgaagcagcatctctggactccca
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113865412 84 - 132174527 atttgatagaagagatgctgaggctgtggaagggaaagggatttgcttaaaggcccagcgtgaggcagcatctctggactccca
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       124737 84 -   1024465 atctgatagaagggatgctgaggctctgggagggaaagggacttgcctagaggcccagggtgaggcagcatctctggactccca
i cebCap1.NW_016107979v1    C 0 C 0
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65259842 94363 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=919825.000000
s hg38.chr15_KI270850v1_alt     94104 342 +    430880 gtccagtgatcttgcccaatactttgctgcttgcctaTACCCCTCTAACTTGGTCAACAGCACATCACAGGGCAAGCCCCAATCCCTGCTTCATTTTTATA-TATGGGCGCTGGTCCCACAGCCCCACTCTCCAGCCATTTGGAAACAAAAACAGATGCTATTGTTCTTCCTTAGAGAACGTGGCCAGTGGAGAC--GGCACACTGGA-------AATCAGAGTGAATG-----TTCTTGAAAGAGGGTCACGGGTCAACAAGGCCCAGCCAAAGGATGCAGTAGAACCATTTTCCTTAGAAATCTTTGGGAGTGAAGTAGGCTTCAGCCACTCCCATCCCTGCCCTCGCGGCTACC
s panTro5.chr15              17331323 344 -  83230942 gtccagtgatcttgcccaatactttgctgcttGCCTATACCCCTCTAACTTGGTCAACAGCACATCACAGGGCAAGCCCCAATCCCTGCTTCATTTTTATA-TATGGGCGCTGGTCCCACAGCCCCACTCTCCAGCCATTTGGAAACAAAAACAGATGCTATTGTTCTTCGTTAGAGAACGTGGCCAGTGGAGACAGGGCACACTGGA-------AATCAGAGTGAATG-----TTCTTGAAAGAGGGTCATGGGTCAACAAGGCCCAGCCAAAGGATGCAGTAGAACCATTTTCCTTAGAAATCTTTGGGAGTGAAGTAGGCTTCAGCCACTCCCATCCCTGCCCTTGCAGCTACC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        17263 344 -    378907 gtccagtgatcttgcccaatactttgctgcttgcctaTACCCCTCTAACTTGGTCAACAGCACATCACAGGGCAAGCCCCAATCCCTGCTTCATTTTTATA-TATGGGCGCTGGTCGCACAGCCCCACTCTCCAGCCATTTGGAAACAAAAACAGATGCTATTGTTCTTCCTTAGAGAATGTGGCCAGTGGAGACAGGGCACACTGGA-------AATCAGAGTGAATG-----TTCTTGAAAGAGGGTCACGGGTTAACAAGGCCCAGCCAAAGGATGCAGTAGAACCATTTTCCTTAGAAATCTTTGGGAGTGAAGTAGGCTTCAGCCACTCCCATCCCTGCCCTTGCGGCTACC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65354205 344 + 171882078 gtccagcgctcttgcccaatactctgcTGCTTGCCTTTACCCATGTAACTTGGTCATCAGCACGTCATAGGGCAAGCCCCAATCCCTACTTTGCTTTTGTA-TATGGGCGCTGGACCCACAGCCCCACTCTCCAGCCATTTGGACACAAAAACAGATGCTATTGTTCTTCCTTAGAGAACGTGGCCAGTGGAAACAGGGCACACTGGA-------AATCAGAGTGAATG-----TCGTTGAAAGAGGGTCATAGGTCAACAAGGCCAAGCCAAAGGTTGCAGTAGAATGCTCTTCCTTAGAAATCTTTGGGAGTGAAGTAGGCTTCAGTCACTCTCATCCCTGCCCCTGCAGCTGCC
i macFas5.chr7              I 94363 C 0
s chlSab2.chr26              50408304 332 -  58131712 G--------TCTTGGCCAATACCACGCTGCTTGCCTCTACCCATCTCGGTTGGTCATTACCACATCCTAGGGCAAGCCCCAATCCCTGCCTCATTTTGGTT-TATGGGCGCTGGACCCACAGCCCCACTCTCCAGCCATTTGGAAACAAAAACATATGCTATTGTT-TTCCTTAGAGAACGTGGCCAGTGTAAACAGGGCACACTGGG-------AATCAGAGTGAATG-----TCCTTGAAAGAGGGCCATGGGTCAACAAGTCCAAGCCAGAGGATGC---AGAATGCTTTTCCTTAGAAATCTTTGGGAGTGAAGTAGGCTTCAGACACTCCTATCCCTTCCCCGGCAGCCACC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       346200 344 -   1458659 gtccagtgctcttgcccaatactctgcTGCTTGCCTTTACCCATGTAACTTGGTCATCAGCACGTCATAGGGCAAGCCTCAATCCCTACTTCATTTTTGTA-TATGGGCATTGGACCCACAGCCCCACTCTCCAGCCATTTGGACACAAAAACAGATGCTATTGTTCTTCCTTAGAGAACGTGGCCAGTGGAAACAGGGCACACTGGA-------AATCAGAGTGAATG-----TCCTTGAAAGAGGGTCATAGGTCAACAAGGCCAAGCCAAAGGTTGCAGTAGAATGCTCTTCCTTAGAAATCTTTGGGAGTAAAGTAGGATTCAGTCACTCTCATCCCTGCCCCTGCAGCTGCC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3787098 344 -   4111199 gtccagtgctcttgcccaatactctgctgcttgcctTTACCCATGTAACTTGGTCATCAGCACGTCATAGGGCAAGCCCCAATCCCTACTTCGTTTTTGTA-TACGGGTGCTGGACCCACAGCCCCCCTCTCCAGCCATTTGGACACAAAAACAGATGCTATTGTTCTTCCTTAAAGAACATGGCCAGTGGAAACAGGGCACACTGGA-------AATCAGAGTGAATG-----TCCTTGAAAGAGGGTCATGGGTCAACAAGGCCAAGCCAAAGGTTGCAATAGAACACTCTTCCTTAGAAATCTTTGGGAGTGAAGTAGGATTCAGTCACTCCCATCCCTGCCCCTGCAGCTGCC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113865496 356 - 132174527 gtccagtgctcttgcccaataccatgctgcttGCCTCTACCCATCTACGTTGGACATCTGCACATCCTAGGGCAAGCCCCAATCCCC-CCTTGTTTTGGTTATATGGGCGCTGGACCCACAGCCCCACCCTCCAGCCATTTGGAAACAAAAACAGATGCCATTGTTCTTCCATAGAGATTGTGGCCGGTGGAAACAGGGCACACTGGGCACATTCAAACGGGGCAAACAGGCCCTCCTTGAAAGAGGGCCATGGGTCAACAGGGCCAAGCCAAAAGGTGCAGTAGAACGCTTTTCCTTAGAAATCTTTGGGAGTGGAGAAGGCTTCAGCCACTCCCATCTCTGCCCCTGCAGCCACC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       124821 331 -   1024465 gtccagtgctcttgcccaataccgtgctgcctGCCAC-------------TGGTCATCAGCGGGTCATAGGGCAAGCCCCAATCCCTGCCTCATTTTGGTT-TATGGGATCTGGACCCACAGCCCTACCCTCCAGTCATCTGGAGACAAAAACAGATGCCATTGTTCTTCCTTAGAGAATGTGGCCAGTGGAAACAGGACACACTGGG-------AGTCGGAGTGAACG-----TCCTTGAAGGAGGGCCATGGGTCAGCAAGGCCAAGCCAAAGGATGCAGTAGAACGCTTTTCCCGAGAAATCTTTGGGAGTGAAGCAGGCTTCAGCCAGTCCCATCCCTGCCCCTGCAGCCACC
i cebCap1.NW_016107979v1    C 0 I 24
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=40811.000000
s hg38.chr15_KI270850v1_alt     94446 20 +    430880 ACTACCCCATTAGTTTAGAC
s panTro5.chr15              17331667 20 -  83230942 ACTACCCCATTAGTTTAGAC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        17607 20 -    378907 ACTACCCCATTAGTTTAGAC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65354549 20 + 171882078 ACTACCACATTAGTTTAGAC
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50408636 20 -  58131712 CTTACCACATTGGTTTAGAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       346544 20 -   1458659 ACTACCACATTAGTTTAGAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3787442 20 -   4111199 ACTACCCCATTAGTTTAGAC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113865852 20 - 132174527 CCTAGCACATCGGTGTAGAC
i calJac3.chr10             C 0 I 5
e cebCap1.NW_016107979v1       125152 24 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=201923.000000
s hg38.chr15_KI270850v1_alt     94466  91 +    430880 AGGGTC------------GGGCGGGG--AGGGGTGTGGA------GAAGAAATGAGCTTGCCTGTGGCCCCCAGGCTC------------CCTCTGTCCTAGCTCAGGTCTGGGTGCCATTCT
s panTro5.chr15              17331687  91 -  83230942 AGGGTC------------GGGCGGGG--AGGAGTGTGGA------GAAGAAATGAGCTTGCCTGTGGCCCCCAGGCTC------------CTTCTATCCTAGCTCAGGTCTGGGTGCCATTCT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        17627 103 -    378907 AGGGTCgggggggggggggggcgggg--aggggTGTGGA------GAAGAAATGAGCTTGCCTGTGGCCCCCAGGCTC------------CTTCTGTCCTAGCTCAGGTCTGGGTGCCATTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65354569 102 + 171882078 AGGGTC---------AGGGGGT------GGGGATGTGGA------GAAAAAATCAGACTGCCTGTGGCCCCCGGGCTCCTTCCCCAGTTGCTTCTGTCCTAGCTTAGGCCTGGGTGCCACTCT
i macFas5.chr7              C 0 I 7
s chlSab2.chr26              50408656 107 -  58131712 TGGGTA---------AGGTGGCGGGGCGGGGGAGGTGGA------TAAAAAATCAGATTGCTCATGGCCCCCAGGCTCCTTCCCCAGCTGCTTCTGTCCTAGCCCAGGCTT-GGTGCCATTCT
i chlSab2.chr26             C 0 I 28
s manLeu1.NW_012105520v1       346564 102 -   1458659 AGGGTC---------AGGGGGT------GGGGATGTGGA------GAAAAAATCAGACTGCCTATGGACCCCGGGCTCCTTCCCCAGTTGCTTCTGTCCTAGCTCAGGCCTGGGTGCCACTCT
i manLeu1.NW_012105520v1    C 0 I 7
s colAng1.NW_012116021v1      3787462 106 -   4111199 AGGGTC---------AGGGGGTGGGG--GGAGATGTGGA------GAAAAAATCAGACTGCCTGTGGCCCCCGGGCTCCTTCCCCAGTTGCTTCTGTCCTAGCTCAGGCCTGGGTGCCCCTCT
i colAng1.NW_012116021v1    C 0 I 7
s calJac3.chr10             113865877 107 - 132174527 AGGGAG------------GGGCAGGGGCGGTGAGGTGGAGG----GAAAAAATCAGATTGCCTACGGCCCCCAGGCTCCTTCCCCAGCTGCTTCTGTTCTAGCCCGGGGCTGGGGGCCATTCT
i calJac3.chr10             I 5 I 7
s cebCap1.NW_016107979v1       125176 109 -   1024465 agggtg------------gggtgggg--ggctgggtgggggtggAGGAAAAATCAGCTTGCCTATGGCCCTCAGGCTCCTTCCCCAGCTGCTTCTGTCCTAGCCCAGGCCCGGAAGCCATTCT
i cebCap1.NW_016107979v1    I 24 I 7
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=28583.000000
s hg38.chr15_KI270850v1_alt     94557 23 +    430880 TT-ACACTCGTGTGCTCGCTCACG
s panTro5.chr15              17331778 22 -  83230942 T--ACACTCGTGTGCTCGCTCACG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        17730 22 -    378907 T--ACACTCGTGTGCTCGCTCACG
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65354678 23 + 171882078 -TCACACTCGTGTGCTCACCTGTA
i macFas5.chr7              I 7 C 0
s manLeu1.NW_012105520v1       346673 23 -   1458659 -TCACACTCGTGTGCTCACCTGTA
i manLeu1.NW_012105520v1    I 7 C 0
s colAng1.NW_012116021v1      3787575 23 -   4111199 -TCACACTCGTGTGCTCACCCATA
i colAng1.NW_012116021v1    I 7 C 0
s calJac3.chr10             113865991 21 - 132174527 -TCACACTCATGTGTGCA--CACA
i calJac3.chr10             I 7 C 0
s cebCap1.NW_016107979v1       125292 23 -   1024465 -TCATGCTCCTGTGcacacccaca
i cebCap1.NW_016107979v1    I 7 C 0
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e chlSab2.chr26              50408763 28 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=634711.000000
s hg38.chr15_KI270850v1_alt     94580 261 +    430880 CACACATCACACACCTTGCTGGTCACACAGTCACAGACTCGCCTCTGCTCCTGTGGTCCAGTGGCCGGACACCCCCTGGGATGGCTCAAAGGAGTCAGGACTTGGAAGTGGGGACATCAGGGTAGCTGAAGGAAATCCACACACCCAGAGCATCTCGGAGTTCAGACTCTCAGACCTGAAGTAGGCGCCCCCGGGACTGGGCTAGGAGTTGGACGGAAT------------GGAGGATGGAGGACAGCGAGAAGAAAGGAAGAGAAATGCAAC
s panTro5.chr15              17331800 261 -  83230942 CACACATCACACACCTTGCTGGTCACACAGTCACAGACTCACCTCTGCTCCTGTGGTCCAGTGGCCGGACACCCCCTGGGATGGCTCAAAGGAGTCAGGACTTGGAAGTGGGGACATCAGGGTAGCTGAAGGAAATCCACACACCCAGAGCATCTCGGAGTTCAGACTCTCAGACCTGCAGTAGGCGCCCCCGGGACTGGGCTAGGAGTTGGACGGAAT------------GGAGGATGGAGGACAGCGAGAAGAAAGGAAGAGAAATGCAAA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        17752 273 -    378907 CACACATCACACACCTTGCTGGTCACACAGTCACAGACTCGCCTCTGCTCCTGTGGTCCAGTGGCCGGACACCCCCTGGGATGGCTCAAAGGAGTCAGGACTTGGAAGTGGGGACATCAGGGTAGCTGAAGGAAATCCACACACCCAGAGCATCTCGGAGTTCAGACTCTCAGACCTGAAGTAGGCGCCCCCGGGACTGGGCTAGAAGTTGGACAGAATGGAGGATGGAGGGGAGGATGGAGGACAGCGAGAAGAAAGGAAGAGAAATGCAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65354701 246 + 171882078 CACACATCACACATCTTGTTGGTCACAGAGTCACAGCCTGGCCTCTGCTCCCATGGTCAAGTGGCCCGATACCCCCAGGGATGGCTCAAAGGAGTCAGGACTTGGATGTGGGGACATCAGGGTAGCAAAAAGAAATCCACACACCCAGAGCATC-------TCAGACTCTCAGACCTGAGCTAGGTTTCGCA--------GAGAGGAGTTGGACAGAAC------------GGAGAATGGAGGACGGCGAGAAGAAAGGATGAGGGATGCAAC
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50408791 257 -  58131712 CACACATCACAAACCTTGATGGTCACACAGTCACAGCCTCGTCTCTGCTCCTGAGGTCCAGTGGCTGGACACCCCCTGGGATGGCTCAAAGGAGTCAGGACTTGGAAGTGGGGACATCAGGGTAGCTGAAGGAAATCCACACACCCAGCGTATCTCAGGGTTCAGACTCTCTGACCTGAGGTAGGCACCCCATGGGCTGggagaggagttggagggaat------------ggaggatggaggacagcgag----aaggaggaggaATGCAAT
i chlSab2.chr26             I 28 C 0
s manLeu1.NW_012105520v1       346696 244 -   1458659 CACACATCACACATCTTGTTGGT--TGGAGTCACAGCCTGGCCTCTGCTCCCATGGTCAAGTGGCCCGATACCCCCAGGGATGGCTCAAAGGAGTCAGGACTTGGATGTGGGGACATCAGGGTAGCAAAAGGAAATCCACACACCCAGAGCATC-------TCAGACTCTCAGACCTGAGCTAGGTTTCGCA--------GAGAGGAGTTGGACACAAT------------GGAGAATGGAGGACGGCGAGAAGAAAGGATGAGGGATGCAAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3787598 253 -   4111199 CACACATCACACAGCTTGTTGGTCACACAGTCACAGCCTGGCCTCTGCTCCCGTGGTCAAGTGGCCCGATACCCCCAGGGATGGCTTAAAGGAGTCAGGAGTTGGATGTGGGGACATCAGGGTAGCAGAAGGAAATCAACACACCCAGAGCATCTCGGGTTTCAGACTCTCAGACCTGAGGTAGGTTTCCCA--------GGGAGGAGTTGGACAGAAT------------GGAGAATGGAGGACGGTGAGAAGAAAGGATGAGGGATGCAAC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113866012 243 - 132174527 CACACATCACACACCTTGTTGGTCACACAGTCACAGCCTGCCCTCTACTCCTGTGGGCCAGTGG-CAGAAATCCACTGGGATGGCTCAAAAGAGTCAGGACTTGGAAATGCAGACATCAGGGTAGCTGAAACAAATCCACACACCCAGAGCAGACTGGGGTTCAGACTCTTAGGCCTGAGGAAGACTCCCTGA-----------------GGACAGAAT------------GGAGGATGGAGGACAGCAAGAAGAAAGGAGGAGGAATGCAGC
i calJac3.chr10             C 0 I 79192
s cebCap1.NW_016107979v1       125315 261 -   1024465 cacacatcacacacCTTGATGGTCACACAGTCACAGCCCGGCCTGTGCTCCTGTGGGCCCGTGGCCGGACACCCCCTGGGATGGCTCAAAGGGGTCAGGACTTGGAAGTGGGGCCATCAGGGTAGCTGAGGGAAATCCACACGCCCAGAGCAGATCGGGGTTCAGACTCTCTGACCTGAGGTAGGCTCCCCCGGGGCTCagaggggagttggacggaat------------ggaagatggaagaaagcaagaagaaaggaggaggaGAGCAAC
i cebCap1.NW_016107979v1    C 0 C 0
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=524968.000000
s hg38.chr15_KI270850v1_alt     94841 247 +    430880 GTGT-GGGCAGCCGCCAAGAGTGAAAATAGAGGGAAGTGTCATGCAAGTGCTGGACAGAAGGCGGCAGGTGGGACGAGCCCCACAGCCCCCTCCTCAAAAACGACCACCTCCAGGACTCAGTGATCCCTGGGGGGCAGGCTCTGCCAGCCCTCGGCCACACGTGGCTCCGGCACCCATGGTCCCAGTGCCTTGGATGGAGACGGCCAGTTCTGGCGGCCAGATGTGGTGCTCTGGAATCCAGTCCCAT
s panTro5.chr15              17332061 247 -  83230942 GTGT-GGGCAGCCGCCAAGAGTGAAAATAGAGGGAAGTGTCATGCAAGTGCTGGACAGAAGGCGGCAGGTGGGACGAGCCCCACAGCCCCCTCCTCAAAAACGACCACCTCCAGGACTCAGTGCTCCCTGGGGGGCAGGCTCTGCCAGCCCTCGGCCACACGTGGCTCCGGCACCCATGGTCCCAGTGCCTTGGATGGAGACGGCCAGTTCTGGCGGCCAGATGTGGTGCTCTGGAATCCAGTCCCAT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        18025 247 -    378907 GTGT-GGACGGCCGCCAAGAGTGAAAATAGAGGGAAGTGTCATGCAAGTGCTGGACAGAAGGCGGCAGGTGGGACGAGCCCCACAGCCCCCTCCTCAAAAACGACCACCTCCAGGACTCAGTGCTCCCCGGGGGGCAGGCTCTGCCAGCCCTCGGCCACACGTGGCTCCGGCACCCATGGTCCCAGTGCCTTGGATGGAGACGGCCAGTTCTGGCGGCCAGATGTGGTGCTCTGGAATCCAGTCCCAT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65354947 247 + 171882078 GTGT-GGGCGGCCACCAAGAGTGAAAATAGAGGGAAGTGCCACCTAAGTGCTGGAAAGAAGGGGGCAGGTGGGACGAGCCCCACAGCCCTCTCCTCAAAAACGACTACCTCCAGGACTCAGCCCTCCCTGGGGGACAGGCTCCGCCAGCCCTCGGCCACACGTGACTCTGGCAGCCATGGTCCCAGTTTCTTGGATGGAGACGGCCAGTTCTTGCGGCCAGGTCGGATGCTCTGGAATCCAGTCCCAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50409048 237 -  58131712 GTGTGGGGCGGCCGCCAAGAGTGAAAATAGAGGGAAGCACCATGTAAGTGCTGGAAAGAAGGGGGTAGGTGGGACGAGCCCCATAGCCCCCTCCCTAAAAACGACCACCTCCGGGACTCAGAGCTCCCTGAGGGGCAGGCTCC-----------ACCACACGCGGCTCCGGCATCCAGGGTCCCAGTGCCTTGGAAGGAGAGGGCCGGTTCTGGCAGCCAGGCCCCGTGCTCTGGAATCCAGTCCCAT
i chlSab2.chr26             C 0 T 32700
s manLeu1.NW_012105520v1       346940 247 -   1458659 GTGT-GGGCGGCCACTAAGAGTGAAAATAGAGGGAAGTGCCACCTAAGTGCTGGAAAGAAGGGGGCAGGTGGGACGAGCCCCATAGCCCTCTCCTCAAAAACGACTACCTCCAGGACTCAGCCCTCCCTGGGGGACAGGCTCTGCCAGCCCTCGGCCACACGTGACTCCGGCAGCCATGGTCCCAGTGTCTTGGCTGGAGACGGCCAGTTCTTGCAGCCAGGTCGGATGCTCTGGAATCCAGTCCCAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3787851 246 -   4111199 GTGT-GGACAGCCGCCAAGAGTGAAAATAGAGGGAAGTGCCACCTAAGTGCTGGAAAGAAGGGGGCAGGTGGGACGAGCCCCACAGCCCTTTCCTCAAAAACGACTA-CTCCAAGACTCAGCCCTCCCTGGGGGACAGGCTCCGCCAGCCCTCAGCCACACGTGACTCCGGCAGCCAAGGTCCCAGTTTCTTGGATGGAGATGGCCAGTTCTGGCGGCCAGGTCCGATGCTCTGGAATCCAGTCCCAT
i colAng1.NW_012116021v1    C 0 C 0
s cebCap1.NW_016107979v1       125576 243 -   1024465 GTGT-GGGCAGCCACCAAGAGTGAAAATAGGGGGAAACGCCAT-CAAGTGCTGGACAGAAGG-GGCAGGTGGGACGAGCCCCACGGCCCCCTCTGCAGAAACGACC--CCTCCGGACTCAGCGCTCCCTGGGGGGCAGGATCCTACAGCCCTCAGCCACATGTGGTTCCAGTACCCAGGGTCCGAGTGCCTGGGATGGAGACGGCGGGTTCTGGCGGCCAGGTCCGATGCTCTGGAATCCAGCACCAT
i cebCap1.NW_016107979v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=275853.000000
s hg38.chr15_KI270850v1_alt     95088 188 +    430880 TTCCTTCCTGGCCACGCCTGTCCAGCGGCCTCTTCAGCCGCATTCAGCCCCTACTTACCTGGGGACCCCGGCTGGGGCACGAGAGCACCAGGGGGGTAGGGCCCAAAGGGATCAGGGGAAGCCTCTGGCCTGGAGGGTATGGGGC-ACGCTTCCCCAAGGGCGGACCCGGCAGGAGGAAGCCCAGGAGC
s panTro5.chr15              17332308 188 -  83230942 TTCCTTCCTGGCGACACCTGTCCAGCGGCCTCTTCGGCCGCGTTCAGCCCCTACTTACCTGGGGACCCCGGCTGGGGCACGAGAGCACCAGGGGGGTAGGGCCCAAAGGGATCAGGGGAAGCCTCTGGCCTGGAGGGTACAGGGC-ACGCTTCCCCAAGGGCGGACCTGGCAGGAGGAAGCCCAGGAGC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        18272 188 -    378907 TTCCTTCCTGGCCACGCCTGTCCAGCGGCCTCTTCGTCCGCATTCAGCCCCTACTTACCTGGGGACCCCGGCTGGGGCACGAGAGCACCAGAGGGGTAGGGCCCAAAGGGATCAGGGGAAGCCTCTGGCCTGGAGGGTATGGGGC-ACGCTTCCCCAAGGGCGGACCCGGCAGGAGGAAGCCCAGGAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65355194 188 + 171882078 TTCCTTCCCGGCCACACCCCTCCAGCGGCCTCTTTGGCTGCTTTCAGCTCCTACTTACTTGGTGATCCCTAGTGGGGCATGAGAGCACCTGGCGAGTAGGG-CCGAAGGGATCAGGGGAAGCCTCTGGTCTGGAGGATACGGGGTGGCACTTCCCCAAGGGCGCACCCAGCAGCAGGAAGCCCAGAAGC
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       347187 188 -   1458659 TTCCTTCCCGGCCACACCAGTCCAGCGGCCTCTTTGGCTGCTTTCAGCCCCTACTTACTTGGTGATCCCGAGTGGGGCATGAGAGCACCTGGCGAGTAGGG-CCGAAGGGATCAGGGGAAGCCTCTGGTCTGGAGGATATGGGGTGGCACTTCCCCAAGGGCGGACCCAGCAGGAGGAAGCCCAGAAGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3788097 187 -   4111199 TTCCTTCCCGGCCACACCCGTCCAGCGGCCTCTTTGGCTGCTTTCAGCCCCTACTTACTTGGTGATCCCGAGTGGGGCATGAGAGCACCTGGGGAGTAGGG-TCAAAGGGATCAGGGAAAGTCTCTGGTCTGGAGGATATGGGGTGGCACTTCCCCAAGGGCAGA-CCAGCAGGAGGAAGCCCAGAAGC
i colAng1.NW_012116021v1    C 0 C 0
s cebCap1.NW_016107979v1       125819 185 -   1024465 TTCCCTCCTGGCCATGCCAGTCCACCAGCCTCTCCCAC-ACATTCAGCCTCTACGCACATGGGGACCGCAGGCGGGGTGTGAGGGCACCTGTGGAGAGAGGGCCAAAGGGGTCAGGGGAAGCC-CTGGCCTGGAGGGTACAGGG--GCGCTTCCCCCAAGGCAGACCCAGCAGGCAGAGGCCCAGGAGC
i cebCap1.NW_016107979v1    C 0 I 51150
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e chlSab2.chr26              50409285 32700 -  58131712 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=326796.000000
s hg38.chr15_KI270850v1_alt     95276 335 +    430880 TGGGTCCTGCCGCCCAGGAGCTGGGCCCTGCCACCCAGGCCGGGCTAGGGACATGGCAGG--GCCTGGGCATCCTGACGCTGGACTTGGGCGACCTG---------------GGAGGCACAGGGAGGGGAGAGATGGGCGACC-----CCGCCCC---------------AGCGCAGTGCCGGCCACACCC-----------------------------CAAGGCGGTTGCCAGAGCTTAAGCCCCGCCCCCAGCAGCGAGAACATCCCAGCTCCACACACCCCCCCCCCCCCCGGCAGCCAGTGCTCCTTGTCAAGCTCCCCCCGTCACTCCAGGTGGGAGCCACCCCGGTGAGGGGG-TGTGCCACTTGCCCCCAGGGCACTCCTCTGGGCATCCCGGG
s panTro5.chr15              17332496 329 -  83230942 TGGG---------------------CCCTGCCACCCAGGCCGGGCTAGGGACATGGCAGG--GCCTGGGCATCCTGGGGCTGGACTTGGGCGACCTG---------------GGAGGCACAGGG----GAGAGATGGGCGGCC-----CCGCCCC---------------AGCGCAGTGCCGGCCACACCCATGCACCGAAGCTCCTCCCTGCCACACCCCAAGGCGGTTGCCGGAGCTTAAGCCCCACCCCCAGTGGCGAGAACATCCCAGCTCCAC----------CCCGCCCCGCAGCCAGTGCTCCTTGTCAAGCTCCCCC-GTCACTCCAGGTGGGAGCCACCCCGGTGAGGGGGGTGTGCCACTTGCCCCCAGGGCACTCCTCTGGGCATCCCGGG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        18460 333 -    378907 TGGG---------------------CCCTGCCACCCAGGCCGGGCTAGGGACATGGCAGG--GCCTGGGCATCCTGGGGCTGGACTTGGGCCACCTG---------------GGAGGCACAGGGAGGGGAGAGATGGGCGGCC-----CCGCCCC---------------AGCGCAGTGCCGGCCACACCCATGCACCGAAGCTCCTCCCTGCCACACCCCAAGGCGGTTGCCGGAGCTTAAGCCCCGCCCCCAGCGGCGAGAACATCCCAGCTCCAC----------CCCGCCCCGCAGCCAGTGCTCCTTGTCAAGCTCCCCCCGTCACTCCAGGTGGGAGCCACCCCGGTGAGGGGG-TGTGCCACTTGCCCCCAGGGCACTCCTCTGGGCATCCCGGG
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65355382 360 + 171882078 CGGG----------------------CCCGCAACCCAGGCTGGGCTGGGGACATGGCGGG--GGCTGGGCATCCCGGGGCTGGACTTGGGCGACCTGCAAGGCGACAGGCAGCAAGGCACAGGGACAGGAGACATAGGCGGTT-----CCGCCCCCTGAGGCGCCGCCCCAGCCCAGTGCCGGCCACGCCCATGCACGGAAGCTCCTCCCTGCCACGCTCTGATGTGGTCGCCAGAGTTTAAGCCCCG-CCCCAGCAGCACCAACAGCCCAGCTCCAC----------CCCGCCCCGCAGCCAGTGCTCCTCAGCAAGCTCCGCCCCTCACTCCAGGTAGCAGCCACCCTGGTGAGGGAC-CACGCCAC-TGCCCCCTTGGCAGTCCTCTGGGCGGCCCAGG
i macFas5.chr7              C 0 I 12232
s manLeu1.NW_012105520v1       347375 364 -   1458659 C-AG----------------------CCCGCAACCCAGGCTGGGCTGGGGACATGGCGGG--GGCTGGGCATCCCGGGGCTGGACTTGGGCGACCTGCAAGGCGACAGGTATCAAGGCACAGGGACAGGAGAAATGGGCGGCTCCGCCCCGCCCCCTGAGGCCCCGTCCCAGCCCAGTGCCGGCCAGGACCATGCACGGAAGCTCCTCCCTGCCAGGCCCCGATGTGGTCGCCAGAGTTTAAGCCCCG-CCCCAGCAGCACCAACAGCCCAGCTCCAC----------CCCGCCCCGCAGCCACTGCTCCTCGGCAAGCTCCGCCTCTCACTCCAGGTGGCAGCCACCCTGGTGAGGGGC-CACGCCAC-TGCCCCCTTGGCACTCCTCTCGGAGGCCCAGG
i manLeu1.NW_012105520v1    C 0 I 1
s colAng1.NW_012116021v1      3788284 359 -   4111199 CGGG----------------------CCCGCAACCCAGGCTGGGCTGGGGACATGGGAGGGTGGCTGGGCACCCCGGGGCTGGACTTGGGCGACCTGCAAGGTGACAGGCAGCAAGGCACGGGGACAGGAGAAATGGGCGGCT-----CCGCCCC--GAGGCCCCGCCCCAGTCCAGTGCCGGCCACGCCCATGCACAGAAGCTCCTCCCTGCCAGGCCCCAATGAGGTCGCCAGAGTTTAagccccg-ccccagcagcaccaacagcccagctccac----------cccgccccgcagccAGTGCTCCTTGGCAAGCTCCGCCTCTCACTCCAGGTGGGAGCCACCCTGGTGAGGGGC-CACGCCAC-TGCCCCCTTGGCACTCCTCTCGGCGG-CCAGG
i colAng1.NW_012116021v1    C 0 I 1
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       126004 51150 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e chlSab2.chr26              50409285 32700 -  58131712 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=590137.000000
s hg38.chr15_KI270850v1_alt     95611 730 +    430880 TGGGGGATTTTGGGGCCGTGGGGGGCAGTCTTTGGTACCTGTGTTCGTCAGGGATGCTCTG-----ACAACCAGGTGTCGTCCACGGGCGGGGGCATGGGCATGGTGACAGTGGTCCTGTTGATGTCACCGATGATGCTGAGCGCCTCCTTCAGCGCGTGGTGCATGTGCAGCATCTCGTCATGCTGCTGTGCCTGCTCTGCCAACTCCTCCATCAGTGTGTTCTGGTTCCCACATGAGTACATATTGGCCAGCGGCTCCGAGATGATGAACTCCGGGGTCTGAGAGTGGGCAAACAGGGAAGAAGGTTGGGACCTGGTGCCTGTGCCGCCCTGGCTGCCTTGCTGGGCCCTTCTGGGACTGTGCGCTGGACTTGGAGCCCCTTGGAGTATGGCTTTTCACATGGGCTTCTATACCGCTTCGACTGGAAGATCCACCTCCCCACTGCCTTTTCTCACTCAGATGGGGACACCGAGGTCCAGAGGAAAAGACACCTGTCAAATGTCACAGATCTGGGAGGGGACTTAAGACTTATCATGCCAAGAGGACACCTGTCTACTCA---G-T-----TTTTTTTTGGTGGGGCGGGGGGCGGTgatagggtctcgctctgtcaccaggctggagtacagtgatgactgctcactgcagcctccacctcctgggctcaaagtgatcctccaacgtcagcctctcgagtagctaggactacaggcacatgccaccaccaagcccagctatt
s panTro5.chr15              17332825 735 -  83230942 TGGGGGATTTTGGGGCCATGGGGGGCAGTCTCTGGTACCTGTGTTCGTCAGGGATGCTCTGCACCTGCAACCAGGTGTCGTCCACGGGCGGGGGCATGGGCATGGTGACAGTGGTCCTGTTGATGTCACTGATGATGCTGAGCGCCTCCTTCAGCGCGTGGTGCGTGTGCAGCATCTCGTCGTGCTGCTGTGCCTGCTCTGCCAACTCCTCCATCAGTGTGTTCTGGTTCCCACACGAGTACATATTGGCCAGTGGCTCCGAGATGATGAACTCCGGGGTCTGAGAGTGGGCAAACAGGGAAGAAGGTTGGGACCTGGTGCCTGTGCCGCCCTGGCTGCCTTGCTGGGCCCTTCTGGGACTGTGCGCTGGACTTGGAGCCCCTTGGAGTATGGCTTTTCACACGGGCTTCTATATCGCTTCGACTGGAagatccacctccccactgccttttctcactcagatggggacaccgaggtctagaggaaaagacacctgtcaaatgtcacaGATCTGGGAGGGGACTTAAGACCTATCATGCCAAGAGGACACCTGTCTACTCA---G-T-----TTTTTTTTGGCGGGGCGGGGGGCGGTgatagggtctcgctctgtcaccaggctggagtacagtgatgactgctcactgcagcctccacctcctgggctcaaagtgatcctccaacgtcagcctctcgagtagctaggactacaggcccatgccaccaacaagcccagctatt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        18793 736 -    378907 TGGGGGATTTTGGGGCCGTGGGGGGCAGTCTCTGGTACCTGTGTTCGTCCGGGATGCTCTGCACCTGCAACCAGGTGTCGTCCACGGGCGGGGGCATGGGCATGGTGACAGTGGTCCTGTTGATGTCACCGATGATGCTGAGCGCCTCCTTCAGCGCGTGGTGCATGTGCAGCATCTCGTCGTGCTGCTGTGCCTGCTCTGCCAACTCCTCCATCAGTGTGTTCTGGTTCCCACACGAGTACTTATTGGCCAGCGGCTCCGAGATGATGAACTCCGGGATCTGAGAGTGGGCAAACAGGGAAGAAGGTTGGGACCTGGTGCCTGTGCCGCCCTGGCTGCCTTGCTGGGCCCTTCTGGGACTGTGCACTGGACTTGGAGCCCCTTGGAGTATGGCTTTTCACACGGGCTTCTATACCGCTTCGACTGGAAGATCCACCTCCCCACTGCCTTTTCTCACTCAGATGGGGACACCGAGGTCCAGAGGAAAAGACACCTGTCAAATGTCACAGATCTGGGAGGGGACTTAAGACCTATCACGCCAAGAGGACACCTGTCTACTCA---GTT-----TTTTTTTTGGCAGGGCGGGGGGCGGTgatagggtctcgctctgtcaccaggctggagtacagtgatgactgctcattgcagcctccacctcctgggctcaaagtgatcctccaacgtcagcctctcgagtagctaggactacaggcacatgccaccaccaagcccagctatt
i gorGor5.CYUI01015946v1    C 0 C 0
s manLeu1.NW_012105520v1       347740 739 -   1458659 TGGGGGATTTTGGGGCCGTGGGGGCCGG-CCCCGGTATCTGCGTTCGTCCGGGACGCTCTGCACCTGCAGCCAGGAGTCGTCCACATGTAGGCTCACGGGCAGGCTGACGGTGGTCTTGTTGATGTCCCCGATGATGGTGAGTACCTCCTTCAGCATGTGGTGTATGCGCAGCATCTCGTCGCGCCGCTGTGCCTCTTCTGCCAACTGCTCCACCAGTGTGTTCTGGTCCCCACATGAGTACAGACTGGCCAGCAGCTCCAAGATGATGAACTCCGTGGTCTGAGAGTGGGCAATCGGGGAAGAAGGTCGGGACCTGATGCCTGTGCCGCACTGGCTGCCATGCTGGGCCCTGCTGGGACGGTGCGCTGGACTTGGAGCCCCTTGTAGTATGGCTTTTCACACCGGCTTCTACACCGTTTCAACTGGAAGATCCACCTCCCCACTGCCTTTTCTCACTCAGATGGGGACACCGAGGTCCAGAGGAAAAGACACCTGTACCATGTGACTGATCTGCGAGGGGACTCAGGACCTATCATGCCAATAGGATACTTGTCTATTCA---G-TTGTTGTTTTGTTTGGCGGGGGTGGGGGTGGTgatagggtctcgctctgtcaccaggctggagtacagtgatcactgctcactacagcctcaacctcctgggctcaaagtgatcctccaatgtcagcctctcgagtagctcggactacagtcacgtgccaccatcaagcccagctatt
i manLeu1.NW_012105520v1    I 1 C 0
s colAng1.NW_012116021v1      3788644 741 -   4111199 TGGGGGACTTTGGGGCCGTGGGGGCCGG-CCCTGGTATCTGCGTTCGTCTGGGACGCTCTGCACCTGCAGCCAGCAGTTGTCCACATGCAGGTTCACCGGCAGGCTGATGGTGGTCGTGCTGATGTCCCAGATGATGGTGAGCACCTCCTTCAGCATGTGGTGCATGCGCAGCATCTCGTCGCGCCGCTGTGCCTCTTCTGCCAACTGCTCCACCAGTGTGTTCTGGTCCCCACATGAGTACAGACTGGCCAGCAGCTCCAAGATGATGAACTCTGTGGTCTGAGAGTGGGCAATCGGGGAATAAGGTGGGGACCTGATGCCTGTGCCGCACTGGCTGCCGTGCTGGACCCTGCTGGGACGGTG-GCTGGACTTGGAGCCCCTTGGAGTATGGCTTTTCACTCCGGCTTCTACATCACTTCAATGGGAAGATGCATCTCCCCACTGCCTTTTCGCACTcagatggggacaccgaggtccagaggaaaagacacctgtccaatgttacTGATCTGAGAGGGGACTCAGGACCTATCACGCCAATAGGATACTTGTCTATTCAGTTG-TTGTTGTTTTGTTTGGCGGGGGTGGGGGTGGTgatagggtctcgctctgtcaccaggctggagtacagtgatcacggctcaccgcagcctcaacctcttgggctcaaagtgatcctccaatgtcagcctctcgagtagctaggactacagtcacgtgccaccaccaagcccagctatt
i colAng1.NW_012116021v1    I 1 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       126004 51150 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              23101159 24711 -  99763055 I
e chlSab2.chr26              50409285 32700 -  58131712 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=84496.000000
s hg38.chr15_KI270850v1_alt     96341 77 +    430880 tttaaaatttttgtgtggagacaaggtctcactatgtggcccaggctggtctcgaactcctgggctcaagtgatcct
s panTro5.chr15              17333560 77 -  83230942 tttaaattttttgtgtggagacaaggtctcactatgtggcccaggctggtctcgaactcctgggctcaagtgatcct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76683556 77 +  99763055 ttttaaatttttgtgtagagaccagttctcactatgttgcccaggtttgtctcaaactcccgggctcaagtgatcct
i panPan2.chr15             n 24711 n 24711
s gorGor5.CYUI01015946v1        19529 75 -    378907 ttttaaatttttgtgtggagac--ggtctcactatgtggcccaggctggtctcgaactcctgggctcaagtgatcct
i gorGor5.CYUI01015946v1    C 0 C 0
s manLeu1.NW_012105520v1       348479 77 -   1458659 tttaaaagttttgtgtacagacaaggtctcactatgttgccaaggctggtatggaactcctaggctcaagtgatcct
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3789385 77 -   4111199 tttaaattttttgtgtagagacaaggtctcactatcttgccgagggtggcatggaactcctgggctcaagtgatcct
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       126004 51150 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e chlSab2.chr26              50409285 32700 -  58131712 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=7412.000000
s hg38.chr15_KI270850v1_alt     96418 9 +    430880 cctgcctcg
s panTro5.chr15              17333637 9 -  83230942 cctgcctcg
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        19604 9 -    378907 cctgcctcg
i gorGor5.CYUI01015946v1    C 0 C 0
s manLeu1.NW_012105520v1       348556 9 -   1458659 cccacctcc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3789462 9 -   4111199 cccacctcc
i colAng1.NW_012116021v1    C 0 C 0
s mm10.chr9                  67700508 9 - 124595110 CCCTCCCCT
i mm10.chr9                 N 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       126004 51150 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50409285 32700 -  58131712 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=1883.000000
s hg38.chr15_KI270850v1_alt     96427 1 +    430880 g
s panTro5.chr15              17333646 1 -  83230942 g
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        19613 1 -    378907 g
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95266862 1 + 121039945 G
i nomLeu3.chr6              N 0 C 0
s chlSab2.chr26              50376585 1 -  58131712 G
i chlSab2.chr26             T 32700 C 0
s manLeu1.NW_012105520v1       348565 1 -   1458659 g
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3789471 1 -   4111199 a
i colAng1.NW_012116021v1    C 0 C 0
s mm10.chr9                  67700517 1 - 124595110 G
i mm10.chr9                 C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       126004 51150 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=8090.000000
s hg38.chr15_KI270850v1_alt     96428 3 +    430880 cct
s panTro5.chr15              17333647 3 -  83230942 cct
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        19614 3 -    378907 cct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95266863 3 + 121039945 CCC
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50376586 3 -  58131712 CCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       348566 3 -   1458659 cct
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3789472 3 -   4111199 cct
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             387663 3 -   3282555 CCC
i saiBol1.JH378276          N 0 C 0
s mm10.chr9                  67700518 3 - 124595110 CCC
i mm10.chr9                 C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       126004 51150 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=409488.000000
s hg38.chr15_KI270850v1_alt     96431 107 +    430880 ccaggagtgGGAGTTGGAGT-----TGATGCCTGGATACA----GGAGCT-CTGTG------------GGTGGGAGTGAGACAAAACACAGGGTCCTGAGCTCTGGGGACCaagcaatgtcctctggtg
s panTro5.chr15              17333650 107 -  83230942 ccaggagtgGGAGTTGGAGT-----TGATGCCTGGATACA----GGAGCC-CTGTG------------GGTGGGGGTGAGACAAAACACAGGGTCCTGAGCTCTGGGGACCaagcagtgtcctctggtg
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        19617 107 -    378907 ccaggagtgGGAGTTGGAGT-----TGATGCCTGGATACA----GGAGCT-CTGTG------------GGTGGGAGTGAGACAAAACACAGGGTCCTGAGCTCTGGGGAGCaagcaatgtcctctggtg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95266866 107 + 121039945 CCAGGAGTGGGAGTGGGAGC-----TGATGTCTGGGTACA----GGAGCT-CTGTG------------GGTGGGAATGAGACAAAACACAGGGTCTTGAGCTCTGAGGAGCaagcagtgtcctccagtg
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50376589 107 -  58131712 CCAGGAGTGGGAGTGGGAGC-----TGATGCCTGGATACA----GGAGCT-CTGTG------------GGTGGGAGTGAGACAAAACACAGGGTCCTGAGCTCTGGGGAGCAAGCAGTGTCCTCCGGTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       348569 107 -   1458659 ccaggagtgGGAGTTGGAGC-----TGATGCCTGGATACG----GGAGCT-CTGTG------------GATGGGAGTGAAACAAAACACAGGGTCCTGAGCTCtggggagcaagcagtgtcctctggtg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3789475 107 -   4111199 ccaggagtgGGAGTTGGAGC-----TGATGCCTGGATACA----GGAGCC-CTGTG------------GGTGGGAGTGAAACAAAACACAGGGTCCTGAGCTCCAGGGAGCaagcagtgtcctctggtg
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             387666 106 -   3282555 CCGGGAGTGGGAGTGGGAGC-----CGATGCCTGGATACA----GGAGTT-CTGTG------------GGTGGGAGTGAGACACAACACAGGGTCCTGAGCTCC-Gggagtgagcagtgtcctctggcg
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       177154 106 -   1024465 CCAGGAGTGGGAGTGGGAGC-----TGATGCCTGGATACA----GGAGCT-CTGTG------------GGTGGGAGTGAGACACAGCACAGGGTCCTGAGCTCT-GGGAGCGAACAGTGTCCTCCGGCG
i cebCap1.NW_016107979v1    I 51150 C 0
s aotNan1.NW_018511953v1       978424 106 +   3745603 CCAGGAGTGGGAGTGGGAGC-----TGATGCCTGGATACA----GGAGCT-CTGTG------------GGTGGGAGTGAGACACAACACAGGGTCCTGAGCTCT-GGGAGCaagcagtgtcctccggcg
i aotNan1.NW_018511953v1    N 0 C 0
s mm10.chr9                  67700521 120 - 124595110 CCAGCAGTGGTGGTGGAGGTCAGCGTGACACCTGGCTGCCTGTTGGTGCTCCTGTACGAGAAGGCCCTAGCGAGCAAAAGGCAAAACTCGGG----CCAGGTGCGGGGA-----CAGTATCCTTAGGTG
i mm10.chr9                 C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=395593.000000
s hg38.chr15_KI270850v1_alt     96538 107 +    430880 aaaaaaatcctggacttg---ctggcagaa------------gatttgcctcttactcgccatgtgctctgaatacattta-cctgccctctgggagcttcagttttcttatctgaaaaatga
s panTro5.chr15              17333757 107 -  83230942 aaaaaaatcctggacttg---ctggcagaa------------gttttgcctcttactcgccatgtgctctgaatacattta-cctgccctccaggagcttcagttttcttatctgaaaaatga
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        19724 107 -    378907 aaaaaaatcctggacttg---ctggcagaa------------gttttgcctcttactcgccatgtgctctgaatacattta-cctgccctccaggagcttcagttttcttatctgaaaaatga
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95266973 105 + 121039945 aaggaaatcctggactcg---caggcagaa------------gttttgcctcttacttgccatgtgctctgaataaagtta-cctgccctccacgagcct--gtttccttatctgaaaaatgg
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50376696 108 -  58131712 Aaggaaatcctggactcg---caggcagaa------------gttttgcctcttactcgccatgtgttctaaataaagttaccctgccctccaagagcctccgtttccttatctgaaaaatgg
i chlSab2.chr26             C 0 I 32488
s manLeu1.NW_012105520v1       348676 107 -   1458659 aaggaaatcgtagactgg---caggcagaa------------gttgtgcctcttaccggccatgtgctctgaatacagtta-cctgccctccatgagcttcagtttccttatctgaaaagtgg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3789582 107 -   4111199 aaggaaatcctagacttg---caggcagaa------------gttgtgcctcttactcgccatgtgctctgaatacagtta-cttgccctccatgagcttcagtttccttatgtgaaaagtgg
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             387772 107 -   3282555 aaggaaatcctagacttg---caggcagaa------------gttttgcctgttactcaccatgtgctctgagtaacgtta-cctgccctccacgagcctccatttctgtatctgaaaaatgg
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       177260 107 -   1024465 Aaggaaatcctggacttg---caggcagaa------------gttttgcctcttactcaccatgtgctctgaataacgtta-cttgccctccacaagcctccatttctgtatctgaaaaatgg
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       978530 103 +   3745603 aaggaaatcctagacttg---taggcagaa------------gttttgcctctt----accatgtgctctgaataacgtta-cctgccttccgcgagcctccatttctgtatctgaaaaatgg
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67700641  99 - 124595110 AAGGGAACTCAAGGCTTAATCCTG------------------GTCTTGCTTCTTACGAGCCATG-ATACTGAATAAAAGTC-ACCAGACTGCATATGC----ACTTCTTTATCTACAAACTGA
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38470704 116 +  40214260 aaaaaaGGCctggactag---tagttagcagccggaatcctggttttgcctcttaccgaccacatgctctggacg--gtcg-cctgacctccgtaagcctcagtttccttatctgcaaaacg-
i canFam3.chr30             N 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=1030427.000000
s hg38.chr15_KI270850v1_alt     96645 239 +    430880 ggacacctgaccccttccctgcccagttcagtgttgtgggacagggttg----ctgtcaagaCAATACCCAGTCCTGCCCTCCTCC--CTGAGT--GGGCCAGGTAGC----CCATGTAGCCTCTTCCCAGCTTTCCTGGGTGGCACTGC-AGCCTGG--------TGCCCATTCAATCT--AGTCCTTCATCTTGCTGGAGCATG-GGGAAGCTCTGAGTAACATGGGACTATAGAGTGCAAGAGGGTTGCTGATGG-TCTGG
s panTro5.chr15              17333864 248 -  83230942 ggacacctgaccccttccctgcccagttcagtgttgtgggacagggttg----ctgtcaagaCAATACCCAGTCCTGCCCTCCTCC--CTGAGT--GGGCCAGGTAGC----CCATGTAGCCTCTTCCCGGCTTTCTTGGGTGGCACTGCCAGCCTGGCCCCCTGGTGCCCATTCAATCT--AGTCCTTCATCTTGCTGGAGCATG-GGGAAGCTCTGAGTAACATGGGACTATAGAGTGCAAGAGGGTTGCTGATGG-TCTGG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        19831 248 -    378907 ggacacctgaccccttccctgcccagttcagtgttgtGGGACAGAGTTG----CTGTCAAGACAATACCCAGTCCTGCCCTCCTCC--CTGAGT--GGGCCAGGTAGC----CCATGTAGCCTCTTCCCGGCTTTCCTGGGTGGCACTGCCAGCCTGGCCCCCTGGTGCCCATTCAATCT--AGTCCTTCATCTTGCTGGAGCATG-GGGAAGCTCTGAGTAACATGGGACTGTAGGGTGCAAGAGGGTTGCTGATGG-TCTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95267078 248 + 121039945 ggacacctgaccccttccctgcccagttcagtgttgtGGGACAGGGCTG----CTGTCAAGACAATACACAGTCCTGCCCTCCTCC--CTGAGT--GGGCCAGGTAGC----CCATGTAGCCTCTTCCCCACTTTCCTGGGTGGCACTGCCAGCCTGGCCCCCTGGTGCCCATTCAATCT--AGTCCTTCATATTGCTGGGGCACG-GGGAGGCTCTGAGTAACGTGGGACTATAGAGTGCGAGAGGGTTGCTGATGG-CCTGG
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50409292 248 -  58131712 GGACACCTGACCCCTTCCCTGCCCAGTTCAGTGTTGTGGGACAGGGCTG----CTGTCAAGACAATCCCCAGTCCTGCCCTCCTCC--CTGAGT--GGGCCAGTTAGC----CCATGTAGCCTCTTCCCCACTTGCCTGTGTGGCACTGCCAGCCTGGTACCCTGGTGCCCATTCAGTCT--AGTCCTTCATACTGCTGGGGCATG-GGGAAGCTCTGAGTAATGTGGGACTATAGAGTGTGCGAGGGTTGCTGATGG-CCGGG
i chlSab2.chr26             I 32488 C 0
s manLeu1.NW_012105520v1       348783 249 -   1458659 ggacacctgacccctttcctgcccagttcagtgttgtGGCACAGGGCTG----CTGTCAAGACAAGACTCAGTCCTGGCCTCCTCC--CCGAGT--GGGCCAGGTAGC----CCATGTAGCCTCTTCCAGGCTTTCCTGGGTGACACTGCCAGCCTGGCCCCCTGGTGCCTATTCAATCT--AGTCCTTCCTATTGCTGGGGCACG-GGGAAGCTCTGAGTAACATGGGACTATAGGGTGTGAGAGGGTTGCTGATGGTCTGGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3789689 248 -   4111199 ggacacctgaccccttccctgcccagttcagtgctgtcgcacagggctg----ctgtcaagaCAAGACTCAGTCCTGGCCTCCTCC--CCAACT--GGGCCAGGTAGC----CCATGTAGCCTCTTCCAGGCTTTCCTGGGTGACACTGCCAGCCTGGCCCCCTGGTGCCCATTCAATCT--AGTCCTTCATATTGCTGGAGAACG-GGGAAGCTCTGAGTAACATGAGACTATAGAGTGCGAGACGGTTGCTGATGG-TCTGG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             387879 247 -   3282555 ggacacctgaccccttccctgccca-ttcagtgttgtGGGACAGGGCTG----CTGTCAAGACAATACCCAGTCCTGCCTTCCTCC--CCAGAT--GGGCCAGGTAGC----CCATGCAGCCTCTTCCCGGCTTTCCTGGGTGGCACTGCCAGCCTGGCCCCCTGGTGGCCATTCAGTCT--AGTCCTTCATATTGCTGGGGCGCG-GGGCAGCTCTGAGTCACGTGGGGCTGTAGAGTGTGACAGGGTCGCTGATGG-CCTGG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       177367 246 -   1024465 ggacacctgaccccttccctgccca-ttcagtgttgGGGGACAGGGCTG----CTGTCAAGACAACACCCAGTCCTGCCTTCCTCC--CCAAGT--GGACCAGGTAGC----CCACGTAGCCTCTTCCCGGCTTTCCTGGGTGGCACTGCCAGCCTGGTCCCC-GGTGGCCATTCAGTCT--AGTCCTTCATATTGCTGGGGCGTG-GGGCAGCTCTGAGTCACATGAGGCTGTAGAGTGCGAGAGGGTCGCTGATGG-CCTGG
i cebCap1.NW_016107979v1    C 0 I 4
s aotNan1.NW_018511953v1       978633 246 +   3745603 ggacacctgaccccttccctgccca-ttcagtgttgCGGGACAGGGCTG----CTGTCAAGACAATACCCAGTCCTGTCTTCCTCC--CCAAGT--GGGCCAGGTAGC----CCATGTAGCCTCTTCCCGGCTTTCCTGGGTGGCACTGCCAGCCTGGACCCT-GGTGGCCATTCAGTCT--AGTCCTTCATATTGCTGGGGTGTG-GGGCAGCTCTGAGTCATATGAGGCTGTAGAGTGCGAGAGGGTCGCTGATGG-CCTGG
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67700740 249 - 124595110 GGTTACCTGAGCCCTT-CTAGCCCAGT---GTCTTGAAGGGCAGTGGTACTGTCTGTCAATCCACTGCCTACTGCTGCCTGACCTCTGCCAGGG--GAGGAGGGTGTCTGTGCCACGTAGCCTCTTTCCAGCCTTCTTGGGTGGCACTGCCAGTCTGGCCCCCTGGTGGCCA--CAGCCTTGTGTCCTTCGTGTTACTGGAGCATG-GGGGGGGGGTGTGT---GTGTG-CTGCTGGGTGGGGGAGGGGCACCG-TGG-CTTTG
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38470820 229 +  40214260 ggacacccgatccctgccccacccaactcaATACGGCAGGACAGTGGTG----CTGTCGAGACACTACCCAGTCCTGCC------C--CCAAGCCAGGACAAAGTCTC--TGCCACGAAGCCATTTCCCAGCTTCCCTGGGTGGCACTGCCAGCCTGGCCCCCTGCTGGCCACTCCCTTT--CATCC--CATCTTGTTGGGGTGCGCGGAAAGCTCCGTGG---GTGGG------------GGGAGGAACCCCAAAGG-CCTG-
i canFam3.chr30             C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=92321.000000
s hg38.chr15_KI270850v1_alt     96884 27 +    430880 GTCCTGTGCCCTCCTCATTCCTGGGCA
s panTro5.chr15              17334112 26 -  83230942 -TCTTGTGCCCTCCTCATTCCTGGGCA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        20079 26 -    378907 -TCCTGTGCCCTCCTCATTCCTGGGCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95267326 26 + 121039945 -TCCCGTGCCCTCCCCATTCCTGGGCA
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50409540 26 -  58131712 -TCCCGTGCCCTCCCCATTCCTGTGCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       349032 26 -   1458659 -CCCTGTCCCTTCCTCATTCCTGGGCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3789937 26 -   4111199 -TCCTGTCCCTTCCTCATTCCTGGACA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             388126 26 -   3282555 -TCCTGTGCCCTCTCCCTTCCTGGGCA
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       978879 26 +   3745603 -TCCTGTGCCCTCTCCCTTCCTGGGCA
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67700989 26 - 124595110 -TCCCAGCCTCTCCTCCTTCCAGGACT
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38471049 26 +  40214260 GTCCTGTCCCCTCCCC-CTCCCGGGCA
i canFam3.chr30             C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       177613  4 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=14290.000000
s hg38.chr15_KI270850v1_alt     96911 3 +    430880 TTC
s panTro5.chr15              17334138 3 -  83230942 TTC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        20105 3 -    378907 TTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95267352 3 + 121039945 TTC
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50409566 3 -  58131712 TTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       349058 3 -   1458659 TTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3789963 3 -   4111199 TTC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             388152 3 -   3282555 TTC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       177617 3 -   1024465 TTC
i cebCap1.NW_016107979v1    I 4 C 0
s aotNan1.NW_018511953v1       978905 3 +   3745603 TTC
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr30              38471075 3 +  40214260 TCC
i canFam3.chr30             C 0 I 4
e mm10.chr9                  67701015 0 - 124595110 C
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=1427240.000000
s hg38.chr15_KI270850v1_alt     96914 456 +    430880 TTGAC-A--AAGGCTCCCAGCAACTGAGGGTACGCAGCAGCTGTAGACACCAGCCTGATGAATATCTCATTGTGGGAAG----------GGCACCATAGCAGGAGTGGAGCTCCAGGGAAATACAGAACCGAGGTCTGGGAGGT-GCTGATGTGAGAGGCCCAAGAA-----------------------------------------------------------------------------------------------------ACCTCGGCTTTGCA-------------CTTGCTGAGTACCATCTGCA---------------------------------------------------------------CCTCTCAGGAG--------------------------GGAGAGCGCCAGGCTCAGGAGGTCCTTGCCGAAGCAAGGGAGCTTGAAAAGGGGGCT--GG--GGTGGGCTCTGCCA-TTTTCAAGGGCTGACA-GGGATCCCCTCT--GGAGGTACTTGGGGCAGTGCTGT-GTGCCGTGGCTCCTGAGTGACAGAGTCAGCTCTGCGCCCCACAAGACCGCTCCCTGCCGAGAACTCACTGTGATCATGTGCTGGGTCCAGATGCTCACGCAGCCTCCTGATGGGAGCATCAGGTGTGCTGCCTG
s panTro5.chr15              17334141 437 -  83230942 TTGAC-A--AAGGCTCCCAGCAACTGAGGGTACGCAGCAGCTGTAGACACCAGCCTGATGAATATCTCATTGTGGGGAG----------GGCGCCATAGCAGGAGTGGAGCTCCAGGGAAATACAGAACCGAGGCCTGGGAGGT-GCTGATGTGAGAGGCCCAAGAA-----------------------------------------------------------------------------------------------------ACCTCGGCTTTGCA-------------CTTGCTGAGTACCATCTGCA---------------------------------------------------------------CCTCTCAGGAG--------------------------GGAGAGCGCCAGGCTCAGGAGGTCCTTGCCGAAGCAAGGGAGCTTGAAAAGGGGGCT--GG--GGTGGGCTCTGCCA-TTTTCAAGGGCTGACA-GGGGTCCCCTCT--GGAGGTACTTGGGGCAGTGCTGC-GTGCCGTGGCTCCTGAGTG-------------------CCACAAGACCGCTCCCTGCCCAGAACTCACTGTGATCATGTGCTGGGTCCAGATGCTCACGCAGCCTCCTGATGGGAGCATCAGGTGTGCTGCCTG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        20108 455 -    378907 TTGAC-A--AAGGCTCCCAGCAACTGAGGGTACGCAGCAGCTGTAGACACCAGCCTGATGAATATCTCATTGTGGGGAG----------GGCGCCATAGCAGGAGTGGAGCTCCAGGGAAATACAGAACCGAGGTCTGGGAGGT-GCTGATGTGAGAGGCCCAAGAA-----------------------------------------------------------------------------------------------------ACCTCGGCTTTGCA-------------CTTGCTGAGTACTATCTGCA---------------------------------------------------------------CCTCTCAGGAG--------------------------GGAGAGCGCCAGGCTCAGGAGGTCCTTGCCGAAGCAAGGGAGCTTGAAAAGGGGG-T--GG--GGTGGGCTCTGCCA-TTTTCAAGGGCTGACA-GGGGTCCCCTCT--GGAGGTACTTGGGGCAGTGCTGC-ATGCCGTGGCTCCTGAGTGACAGAGTCAGCTCTGCGCCCCACAAGACCGCTCCCTGCCCAGAACTCACTGTGATCATGTGCTGGGTCCAGATGCTCACGCAGCCTCCTGATGGGAGCATCAGGTGTGCTGCCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95267355 533 + 121039945 TTGAC-A--AAGGCTCCCAGCAACTGAGGGTACGCAGCGGCTGTAGACACCAGCCTGACAAATATCTCATTGTGGGGAG----------GGGACCATAGCAGGAGAGGGGCTCCAGGGAAATACAGAACCCGGGACTGGGAGGT-GTTGATGTGAGAAGCCCAAGAAACTTTATTCCAC-CTGTCAAAGCCACCTCCT----------------TCCAGATGCCCAAAGGCTCCCCATCTGAGCC--------ACTTGCTGGGCGGGGACTTTGGCTTTGCA-------------CTTGCTGAATACCATCTGCA---------------------------------------------------------------CCTCTCAGGAG--------------------------GGAGAGTGCCAGGCTCAGGAGGTCCCTGCCCAAGCAAGGGAGCTTGGAAAGGGGGCTA-GG--GGTGGGCTCTGCCATTTTTTCAGGGCTAGTG-GGGGACCCCTCT--GGAGGTACTTGAGGCAGTACCAT-ATGCTGTGGCTCCTGAGTGACAGAGTCAGCTCTGCAC-CCACAAGACCGCTCCCTACCTAGAATTCACTGTCATCATGTGCTGGGTCCAGATGCCCACGCAACCTCCTGGCAGGAGCATCACATGTGCCGCCTG
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50409569 453 -  58131712 TTGAC-A--AAGTCTCCCAGCAACCGAGAGTACACAGCAGCTGTAGACACCAGCCTGATGAATATCTCATTGTGGGGAG----------GGGGCCATAGCAGGAGTGGGGCTCCAGGGAAATACAGAACCTGGGACTGGGAGGT-GTTGATGTGAGAGGCCCAAGAA-----------------------------------------------------------------------------------------------------ACCTCGGCTTTGCA-------------CTTGCTGAATACCATCTGCG---------------------------------------------------------------CCTCTCAGGAG--------------------------GGAGAGTGCCAGGCTCAGGAGGTCCCTGCCCAAGCAAGGGAGCTTGGAAAGGGGGCT--GG--GGTATGCTTTGCCA-TTTTTGAGGGCTGGCAGGGGGACCCCTCT--GGAGGTACTTGGGGCAGTACAGC-ATGCCATGGCTCCTGAGTGACAGAGTCAGCTCTGCACCCCACAAGACCACTCCCTACCCAGAACTCACTGTGATCATATGCTGGGTCCAGATGCCCATGCAGCCTCCTGGCGGGAGCATCAGTTGC----ACCA
i chlSab2.chr26             C 0 I 4
s manLeu1.NW_012105520v1       349061 455 -   1458659 CTGAC-A--AAGGCTCCCAACAACTGC---TAAGCAGCAGCTGTAGACAGCAGCCCGATGAATATCTCATTGTGGGGAG----------GGGGCCATAGCAGGAGTGGGGCTCCAGGGAAATACAGAACCCAGGCCTGAGAGGT-GCTGATGTGAGAGACCCAACAA-----------------------------------------------------------------------------------------------------ACCTCAGCTTTGCA-------------CTTGCTGGATACCATCTGCA---------------------------------------------------------------CCTCTCACGAG--------------------------GGAGAATGCCAGGCTCAGGAGGTCCTTGCCCAAGCAAGGGAGCTTAGAAAGGGGGCTA-GG--AGTGGGCTCTGCCA-TTTTCAAGGGCTGGCAGGGGGACCCCTCT--GGAGGTACTTGGAGCAGTACCAC-ATGCCGTGGCTTCTGAGTGACAGAGTCAGCTCTGCGCCCCACAAGACTGCTCCCTATCCAGAACTCACTGTGATCATGTACTGGGTTCAGATGCCCACACAGTCTCCTGGTGGGAGCACCAGGTGTGATAACTG
i manLeu1.NW_012105520v1    C 0 I 4
s colAng1.NW_012116021v1      3789966 480 -   4111199 CTGACAA--AAGGCTCCCAGCAACGAG---TAAGCAGCAGCTGTAGACACCAGCCTGATGAATATCTCATTGTGGGGAG----------GGGGCCATAGCAGGAGTGGGGCTCCAGGGAAATACAGAACCCAGGCCTCAGAGGT-GCTGATGTGAGAGACCCAAGAA-----------------------------------------------------------------------------------------------------ACCTCAGCTTTGCA-------------CTTGCTGAATACCATCTGCGCCTCTCAGGAGGGAGAGTGCCAGGCTCAGGAGGCAGCTTTGCGCTTGCTGAATACCATCTGCACCTCTCAGGAG--------------------------GGAGAGCGCCAGGCTCAGGAGGTCCTTG----------------------------------------GCTCTGCCA-TTTTCAAGGGCTGGCAGGGGGACCCCTCT--GGAGGTACTTGGAGCAGTACCGC-ATGCCGTGGCTTCTGAGTG--AGAGTCAGCTCTGCACCCCACAAGACTGCTCCCTATCCAGAACTCACTGTGATCATGTGCTGGGTTCAGATGCCCATGCAGTCTCCTGGTGGGAGCACCAGCGGTGCTAACTG
i colAng1.NW_012116021v1    C 0 I 1143
s saiBol1.JH378276             388155 538 -   3282555 TTGAC-A--AAGGCTCCCGGCAACTGAGGGTACACAGCTGCTGTTGCCACCAGCCTGCTGAATATCTAATTGTGGGGAG----------GGGGTCATAGCAGGAGTGGGGCTCCAGGAAAACACAGATCCCAGGCCTGGGAGGT-GTTGATGTCAGAGGCCCAAGAAACCTTCTTCCATGCTGTGAAGACCAACTCCT----------------TCCAGATGCCCAAAGGCTCCCCATCTGAGCC--------ACTTGCTGGGTGGGGACCTAGCCCTTCCA-------------CTTGCTGAACACCATCCGCA---------------------------------------------------------------CCTCTCAGGAG--------------------------GGAGACTGTCAGGCTCAGGAGGTCCTCGCCCAAGCAAGGGAGCTTGGAAAGGGGGCTGGGGGCGGAGGGCTCTGCCA-TTTTCAAGGACTGGTGGGGGAACGCCTGT--GGAGGTACTTGGGGCAGTCCTGG-GTGCCGTGGCTTCTGAGTGACAGAGTCAGCTCTGCACCCCACAAGACCTCTCTCTACCCAGAACTCATTGGCATCACATGCTGGGTCCAGATGCCCACGCAGCCTCCTGGCGGGAGCATCAGGTGCGCTGCCTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       177620 529 -   1024465 TTGAC-A--AAGGCTCCCAGCAACTGAGGGTACACAGCTGCTGTTGCCACCAGCCTGCTGAATATCTAATGATGGGGAG----------GGGCCCATAGCAGGAGTGGGGCTCCAGGAAAACACAGATCCCAGGCCTGGGAGG-------TCCAAGAGGCCCAAGAAACCTTATTCCACACTGTGATGGCCACCTCCTTCCAATGCCCAAAGGCTCCCCATC-----------------TGAGCC--------ACTTGCTGGGTGGGGACCTCAACTTTCCA-------------CTTGCTGAACACCATCTGCA---------------------------------------------------------------AATCTCAGGAG--------------------------GGAGACTCTCAGGTTCAGGAGGTCCTTGCCCAAGCAAGGGAGCTTAGAAAGGGGGCTGGGG--GGGTGGCTCTGCCA-TTTTCAGGAGCTGGCAGGGGAACCCCTAT--GGAGGTACTTGGGGCAGTCCTGT-GTGCCATGGCTTCTGAGTGACAGAGTCAGCTCTGCGCCCCACAAGACCTCTCTCTATCCAGAACTCACTGGCATCACGTGCTGCGTCCAGATGCCCATGCAGCCTCCTGGCGGGAGCATCAGGTGTGCTGCCTG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       978908 531 +   3745603 TTGAC-A--AAGGCTCCCAACAACTGAGGGTACACAGCTGCTGTTGCCACCAGCCTGCTGAATATGTAATTGTGGGGAG----------GGGGCCATAGCAGGAGTGGGGCTCCAGGAAAACACAGATCCCAGGCCTGGGAGGT-GTTGATGTA--AGGCCCAAGAAACCTTATTCCACGCTGTGAAGGCCACCTCCT----------------TCCAGATGCCCACAGGCTCCCCATCTGAGCC--------ACTTGCTGGGTGGGGACCTTGGCTTTCCA-------------CTTGCTGAACACCATCTGCA---------------------------------------------------------------CCTCTCAGGAG--------------------------GGAGACTGTCAGGCTCAGGAGGTCCTTGCCCAAGCAAGGGAGCTTGGAAAGGGGGTTGTGG--GGGT-GCTCTGCCA-TTTTCAAGGGCTGGCAGGGGAACTCCTGT--GGATGTACTTGGGGCAGTCCTGT-GTGCCATGGCTTCTGAGTGAT--AGTCAGCTCTGCGCCCCACAAGACCCCTCTCTACCCAGAACTCACTGGCATCACGTGCTGGGTCCAGATGCCCATGCAGCCTCCTGGTGGGAGCATCAGGTGCGCTGCCTG
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67701015 531 - 124595110 CTGAT-AACAAGGCTCCCAGTGACTCAGGACATACAGCTGCCCTAGCCACTGGC-------AGATTTCATTGTGGGGAGGGGTCAGAAAGGGGCTATGGTAGATGCTAGGGCCTGGGAGAAGTGAGAACAGAAGCCAAAGAAGCAAAAGAAGTGCAGGGTCTGAGGAATCTTACTTGACCCTCTTTAAGGCAGCTTCC--------------------------------------------TCCTCTGAGCTACCTGCTGGGTGGGAGCTGCTCCCCCACACCCCGCACCTCCCCCCTCTGTGTTCCA---GTA---------------------------------------------------------------CTTCTCAGGAGGAGCGCACACCCTGATGGGGTAGAAAGGAACTTGTGGGGCCCAGGAGGCCTCTG--------AGTG---CTGGAAAGGGACCCG-GA--GGTGGGTCCTGCCC-TTTTCAAGGGT---CAGGGTAAGCCCTGTTGGAAAGTTCTTGGAGCAGCACCATAGTGCTGCAGATCC--AGTGGCAGGGCCAGCCATGTTCTCTTGGATCCTGCTC---ATGTAGAAAGAATAGGGGTCA--TGCTG--------TGACCACGTGGCCTCTAGGTGGGAGCACCAAGCATGCTGTTTG
i mm10.chr9                 C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr30              38471078   4 +  40214260 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=49146.000000
s hg38.chr15_KI270850v1_alt     97370 17 +    430880 -CCCAGGGCGGCCCACAA
s panTro5.chr15              17334578 17 -  83230942 -CCCAGGACGGCCCACAA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        20563 17 -    378907 -CCCAGGATGGCCCACAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95267888 17 + 121039945 -CCCGGGACGGCCCACGG
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50410026 17 -  58131712 -CCCAGGACGGCCCACGG
i chlSab2.chr26             I 4 I 2
s manLeu1.NW_012105520v1       349520 17 -   1458659 -CCCAGGACGGCCTACAA
i manLeu1.NW_012105520v1    I 4 I 2
s saiBol1.JH378276             388693 17 -   3282555 -CCCAGGGCGGCCCATGG
i saiBol1.JH378276          C 0 I 2
s cebCap1.NW_016107979v1       178149 17 -   1024465 -CCCAGGGCGGCCCATGG
i cebCap1.NW_016107979v1    C 0 I 2
s aotNan1.NW_018511953v1       979439 17 +   3745603 -CCCAGGGCGGCCCATGG
i aotNan1.NW_018511953v1    C 0 I 2
s mm10.chr9                  67701546 18 - 124595110 CTCTACCGTAGCCCAGAG
i mm10.chr9                 C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr30              38471078  4 +  40214260 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3790446 1143 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=406900.000000
s hg38.chr15_KI270850v1_alt     97387 153 +    430880 GAGTC--------------------TGCCCTGCCCTGCCCTGCCCTGCTATGGAACAACTCCCATTCTGCCTTTGGGGAGAGGTGTTCATTTA-AACCATGAGTG------------GGCTGGCCCCCGTGGCACAGTTACCACAG----AGAGTCTGCCACTACCCATGGCTGAGAGCTCTAGTTCT---------TC
s panTro5.chr15              17334595 145 -  83230942 AAGAG--------------------T--------CTGCCCTGCCCTGCTATGGAACAACTCCCATTCTGCCTTTGGGGAGAGGTGTTCATTTA-AACGATGACTG------------GGCTGGCCCCCATGGCACAATTACCACAG----AGAGTCTGCCACTACCCATGGCTGAGAGCTCTAGTTCT---------TC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        20580 139 -    378907 GAGT----------------------------------CCTGCCCTGCTATGGAACAACTCCCATTCTGCCTTTGGGGAGAGGTGTTCATTTA-AACGATGACTG------------GGCTGGCCCCCATGGCACAATTACCACAG----AGAGTCTGCCACTACCCATGGCTGAGAGCTCTGGTTCT---------TC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95267905 159 + 121039945 AAGAG--------------------T---CTGCCCCGCTCTGCCTTGCTATGGAACAACTCCTGTTCTGCCTTCGGGGAGAGGTGTTCATTTA-AGTGATGACTG------------GGCTGGCCCCCATGGCACAGTTATCACAG----AGAGTCCGCTGCTACCCATAGCTGAGAGCTCTAGTTCTTCCTGGTGGTC
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50410045 155 -  58131712 --GAG--------------------T---CTGCGCCACTCTGCCCTGCTATGGAACAACCCCTGTTCTGCCTTTGGGAAGAGGTGTTCGTTTA-AGCGATAACTG------------GGCTGGCCCCCATGGCACAGTGATCAC------AGAGTCTGCTGCTACCCATGGCTGAGAGCTCTAGTTCTTCCTAGTGGTC
i chlSab2.chr26             I 2 C 0
s manLeu1.NW_012105520v1       349539 148 -   1458659 --GAG--------------------T---CTGCCCTGCTCTGCCTTGCTATGGAACAACTCCTGTTCTGCCTTTGGGGAGAGGTGTTCATTTA-AACGATGACTG------------GGCTGGCCCCCATGGCACAGCTACCACAG----AGAGTCTGCCACTATCCATGGCTGAGAGCTCCAGTTCT---------TC
i manLeu1.NW_012105520v1    I 2 C 0
s colAng1.NW_012116021v1      3791589 148 -   4111199 --GAG--------------------T---CTGCCCTGCTCTGCCCTGCTATGGAACAACTCCTGTTCTGCCTTTGGGGAGAGGTGTTCATTTC-AGCGATGACTG------------GGCTGGCCCCCATGGCACAGCTACCACAG----AGAGTCTGCCGCTATCCATGGCTGAGAGCTCTAGTTCT---------TC
i colAng1.NW_012116021v1    I 1143 C 0
s saiBol1.JH378276             388712 122 -   3282555 --GAG--------------------T---CCGCCCTGCTCTGCCCTGCTATGCAGCAACTCCTGTTCTGCCTTTGGGAAGAGGTGTTCA-----------------------------------CCCCATAGCACAGTTGCCAC--------GGTCTGCTGCTACCCATGGCTGAGAGTTGTAATTCT---------TC
i saiBol1.JH378276          I 2 I 9
s cebCap1.NW_016107979v1       178168 146 -   1024465 --GAG--------------------T---CTGCCCTGCTCTGCCCTGCTATGCAGCAACTCCTGTTCTGCCTTCGGGAAGAGGTGTTCATTTA-AGCAGCGGCT--------------GCTGGGCCCCATGGCACGGTTACCACAG----AGAGTCTGCTGCTGCCCGTGGCTGAGAGCTCTGGTTCT---------TC
i cebCap1.NW_016107979v1    I 2 I 358
s aotNan1.NW_018511953v1       979458 165 +   3745603 --GAGtctgccctgctctgccctgct---ctgccctgctctgccctgctATGCAGCAACTCCTGTTCTGCCTTCGGGAAGAGGTGTTCATTTA-AGCAATGGCT--------------GCTGG-CCCCATGGCACAGTTACCACAG----AGAGTCTGCTGCTGCCCATGGCTGAGAGCTCTAGTTCT---------TC
i aotNan1.NW_018511953v1    I 2 I 9
s mm10.chr9                  67701564 142 - 124595110 -------------------------------GAGCTGCTC--------------ACAGTGCC---TTAGACCCTGTGGGGACCAATCCGTGAAGAGTGATGACTGCTGGCTCACACTAGTTAGCACCGACAGCCCTGGCATCTCAGCCGCTCAGTCAGCCTCAACATGCGGCTGGAAATTATAATTTT---------GA
i mm10.chr9                 C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr30              38471078   4 +  40214260 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=120518.000000
s hg38.chr15_KI270850v1_alt     97540 48 +    430880 --------TCTGAAGCCACCAGGACAGA--------TGAACAGTGGCTTCC----CCCTTTTGGCCGA
s panTro5.chr15              17334740 47 -  83230942 --------TCTGAAGCCACCAG-ACAGA--------TGAACAGTGGCTTCC----CCCTTTTGGCCGA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        20719 48 -    378907 --------TCTGAAGCCACCAGGACAGA--------TGAACAGTGGCTTCC----CCCTTTTGGCCGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95268064 48 + 121039945 --------TCTGAAGCCACCAGGACGGA--------TGAACAGCGGCTTCA----CCCTCTTGGCCGA
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50410200 48 -  58131712 --------TCTGAAGCCACCAGGACGGA--------TGAACCGTGGCTTCA----CCCTCTTGGCCGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       349687 48 -   1458659 --------TCTGAAGCCACCAGGATGGA--------TGAATGGCAGCTTCA----TCCTCTTGGCTGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3791737 48 -   4111199 --------TCTGAAGCCACCAGGATGGA--------TGAATGGCAGCTTCA----TCCTCTTGGCCGA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             388843 48 -   3282555 --------TCTGAAGCTACCAGGACAGA--------TGAATGGCAGCTTCA----CCCTTTTGACCTA
i saiBol1.JH378276          I 9 I 307
s aotNan1.NW_018511953v1       979632 48 +   3745603 --------TCTGAAGCTACCAGGACGGA--------TGAATGGCAGCTTCA----CCCTTTTGACCTA
i aotNan1.NW_018511953v1    I 9 I 308
s mm10.chr9                  67701706 66 - 124595110 TCGGTGGTCCTGGTGTGCCCTAG--GGACTCTGCTCCGAAGAGTAGATCTCAGTGTCCCTCAGACTGG
i mm10.chr9                 C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr30              38471078  4 +  40214260 I
e cebCap1.NW_016107979v1       178314 358 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=43771.000000
s hg38.chr15_KI270850v1_alt     97588 16 +    430880 CTCA-GCTGCCTTTCAT
s panTro5.chr15              17334787 16 -  83230942 CTCA-GCTGCCTTTCAT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        20767 16 -    378907 CTCA-GCTGCCTTTCAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95268112 16 + 121039945 CTCA-GCTGACTTTCAT
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50410248 16 -  58131712 CTCA-GCTGCCTTTCAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       349735 16 -   1458659 CTCA-GTTGCCTTTCAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3791785 16 -   4111199 CTCA-GTTGCCTTTCAT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             389198 16 -   3282555 cTCA-GCTGCCTTTGGT
i saiBol1.JH378276          I 307 C 0
s aotNan1.NW_018511953v1       979988 16 +   3745603 cTCA-GCTGCCTTCCAT
i aotNan1.NW_018511953v1    I 308 C 0
s mm10.chr9                  67701772 16 - 124595110 CCCACTCTGCCTGGGA-
i mm10.chr9                 C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr30              38471078  4 +  40214260 I
e cebCap1.NW_016107979v1       178314 358 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=1508046.000000
s hg38.chr15_KI270850v1_alt     97604 423 +    430880 CAGCTCATCTGCTCCTAGGATCCACTCTTCCT---CTGGCTGGCACCTG-ATCTGAGCCCGAGGCTCACACCTCTGCCCACAGGCCCCAGCAGCTGCTTCACCTCCGACTCCATCCCCC---ACCAAGCACTGCCCCTC---ACC-AGCTGCTGGGGTGCCACTAGTGCCCCTACATGGTTCTCCCTCTCCAGACCCTTGGGTCCAGCTCTAGCTTCCTTCGGGAAGCCACACCCCAAGACCCCAGCCCTGCTCTGGGGCCCTGTATCCCCGACTTCCTGCATTCTTCTCCCTCCTTCTGGGAACATGAACTTGCCCTGCCAGCCTGATGACTCCTAGAGGGCAGGACACCAGGTCCTGGACCATGGCAGGCCTGGGAGTGTCT-GCTGCCGGTGATGCTGGAGCTGGTGCCCATGTCCACATGATGTCCATGGC
s panTro5.chr15              17334803 423 -  83230942 CAGCTCATCTGCTCCTAGGATCCACTCTTCCT---CTGGCTGGCACCTG-ATCTGAGCCCGAGGCTCACACCTCTGCCCACAGGCCCCGGCAGCTGCTTCACCTCCGACTCCATCCCCC---ATCAAGCACTGCCCCTC---ACC-AGCTACTGGGGTGCCACTAGTGCCCCTACATGGTTCTCCCTCTCCAGACCCTCGGGTCCAGCTCTAGCTTCCTTCAGGAAGCCACACCCCAAGACCCCAGCCCTGCTCTAGGGCCCTGTATCCCCGACTTCCTGCATTCTTCTCCCTCCTTCTGGGAACATGAACTTGCCCTGCCAGCCTGATGACTCCTAGAGGGCAGGACACCAGGTCCTGGACCATGGCAGGCCTGGGAGTGTCT-GCTGCCAGTGATGCTGGAGCTGGTGCCCATGTCCACATGATGTCCATGGC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        20783 423 -    378907 CAGCTCATCTGCTCCTAGGATCCACTCTGCCT---CTGGCTGGCACCTG-ATCTGAGCCCGAGGCTCACACCTCTGCCCACAGGCCCCAGCAGCTGCTTCACCTCCGACTCCATCCCCC---ACCAAGCACTGCCCCTC---ACC-AGCTACTGGGGTGCCACTAGTGCCCCTACATGGTTCTCCCTCTCCAGACCCTCGGGTCCAGCTCTAGCTTCCTTCGGGAAGCCACACCCCAAGACCCCAGCCCTGCTCTAGGGCCCTGTATCCCCGACTTCCTGCATTCTTCTCCCTCCTTCTGGGAACATGAACTTGCCCTGCCAGCCTGATGACTCCTAGAGGGCAGGACACCAGGTCCTGGACCATGGCAGGCCTGGGAGTGTCT-GCTGCCAGTGATGCTGGAGCTGGTGCCCATGTCCACATGATGTCCATGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95268128 422 + 121039945 CAGCTCATCTGCCCCTAGGATCCACTCTGCCT---CTGGCTGGCACTTG-ACCTGAGCCCCAGGCTCACACCTCTGCCCACAGG-CCCAGCAGCTGCTTCACGTCCAACTCCATCCCCC---ACCAAGCACTGCCCCTC---ATC-AGCTACTGGGGTACCACTAGTGCCCCCACATGGTGCCCCCTCTCCAGACCCTCGGGTCCAGCTATAGCTTCCTTCTGGAAGCCATACCCCAAGACCCCAGCCCTGCTCTAGGGCCCTGTATCCCTGACTTCCTGCATCCTTCTCCCTCCTTCTAGGAACATGAACTTGCCCTGCCAGCCTGGCGGCTCCTGGAGGGCAGGACACTAGCGCCTGGACAATGGCAGGCCTGGGAACCTCT-GCTGCCAGTGATGCTGGAGCTGGCACCCGTGTCCACATGATGTCCATGGC
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50410264 423 -  58131712 CAGCTCATCTGCCCCTAGGATCCACTCTGCCT---CTGGCTGGCACCTG-ACCCGAGCCCCAGGCTCACGCCTCTGCCCACAGG-CCCAGCAGCTACTTCACCTCCAACTCCATCCCTCTTGACCAAGCACTGCCTCTCTGGACCAAGCTACTGGGGTGCCACTAGTGCCCCCACATGGTGCCCCCTCTCGGGATCCTTGGGTCCGGCTGTAGCTTCCTTCTGGAAGACACACTCCAAAACCCCAGCCCTGCTCTAGGGCCCTGTATCCCTGACTTTCTGCATCCTTCTCCCTCCTTCTGGGAACATGAACTTGCCCTGCCAGCCTGGTGGCTCCTAGAGGAG------CCTGGGCCTGGACCATGGCAGGACCGGGAGCATCT-GCTGCTAGTGATGCTGGAGCCCGCACCCATGTCCACGTGATGTCCATGGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       349751 422 -   1458659 CAGCTCATCTGCTCCTAGGATCCACTCTGCCT---CTGGCTGGCACCTG-ATCTGAATCCCAGGCTCACACCTCTGCCCACAGG-CCCAGCAGCTGCTTCACCTTCAACTCCCTCCCCC---ACCAAGCACTGCCCCTC---ACC-AGCTACTGGGGTGCCACTAGTACCCCTACATGGGGCTCCCTCTCCAGACCCTCGGGTCCAGCTGTAGCTTCCTTTTGGAAGCCACACCCCAAGAACCCAGCCCTGCTCTAGGGCCCTGTATCCCCAACTTCCCGCATCCTTCTCCCTCATTCTGGGAAGATGAACTTGCCCTGCCAGCCAGATAGCTCCTGGAGGGGAGAACACCAGGGCCTGGACCATGGTAGGCCTGGCAGTGTCT-GCTGACAGTGATGCTGGAGCTGGTGCCCATGTCCACATGACGTCCATGGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3791801 422 -   4111199 CAGCTCATCTGCTCCTAGGATCCACTCTGCCT---CTGGCTGGCACCTG-ATCTGAATCCCAGGCTCACACCTCTGCCCACAGG-CCCAGCAGCTGCTTCACCTTCAACTCCTTCCCCC---ACCAAGCACTGCCCCTC---ACC-AGCTACTGGGGTGCCACTAGTGCCCCTACATGGTGCTCCCTCTCCAGACCCTCAGGTCCAGCTATAGCTTTCTTTTGGAAGCCACACCCCAAGACACCAGCCCTGCTCTAGGGCCCTGTATCCCCAACTTCCTGCATCCTTCTCCCTCATTCTGGGAAGATGAACTTGCCCTGCCAGCCAGATAGCTCCTGGAGGGCAGGACACCAGGGCCTGGACCATGGTAGGCCCGGGAGTGTCT-GCTGACAGTGATGCTGGAGCTGGTGCCCATGTCCACATCATGTCCATGGC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             389214 416 -   3282555 CAGCTCATCTGCTCCTAGGATCCACTCTGCCT---CTGGCTGACACCTGAATCTAAGCCCCAGGCTCACACCTCTGCCCACAGG-CCCAGCAGCTGCTTCACCTCCAACTCCATCCCTCTGGACCAAGCACTGCCTCTC---ACC-AGCTACTAGGGTGCCACTAGTCCCTCCACATGGTGCCCCTTCTCCAGCCCCTCGGGTCTGGCTGTAGCTTCCTTCTGGAAGCCACAC-CCAAGACCCCAGCCCTGCTCTAGGGCCCTG---CCCCAACCTCCCGCATCCTTCTCCCTCCTTCTGGGAATATGAACTTGCCCTGCCAGGCTGGCAGCTCCTGGAGGGCAGGGCACCAGGGCCTGGACCGTGACAGACCCGAGAGTGTCT-GCTGCCAGCGATGCTGGAGCTGG------TGTCCACATGATGTCCATGGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       178672 422 -   1024465 cagccCATCTGCTCCTAGGATCCACTCTGCCT---CTGGCTGGCACCTGAACCTGAGTCCCAGGTTCACATCTCTGCCCACAGG-CCCAGCAGCTGCTTCACCTCCAACTCCATCCTCCTGGACCAAGCACTGCCCCTC---ACC-AGCTGTTGGGGTGCCACTAGTGCCCCCACATGGTGCCCCCTCTCCAGCCCCTCGGGTCTGGCTGTAGCTTCCTTCTGGAAGCCACAC-CCAAGACCCCAGCCCTGCTCTAGGGCCCTG---CCCCAACATCCTGCATCCTTCTCCCTCCTTCTGGGAATATGAACTTGCCCTGCCAGCCTGGCAGCTCCTGGAGGGCAGGACACCAGGGCCTGGACCGTGACAGTCCTGGGAGTGTCT-GCTGCCAGCGATGCTGGAGCTGGCGCCCATGTCCATGTGATGTCCATGGC
i cebCap1.NW_016107979v1    I 358 C 0
s aotNan1.NW_018511953v1       980004 421 +   3745603 CAGCTCATCT-CTCCTAGGATCCACTCTACCT---CTGGCTGGCACCTGAACCTGAGCCCCAGGCTCACACCTCTGCCTACAGG-ACCAGCAGCTGCTTCACCTCCAACTCCATCCCCCTAGACCAAGCACTGCCCCTC---ACC-AGCTACTGGGGTGCCACTAGTGCCCCCACATGGTGCCCCCTCTCCAGCCCCTCGGGTCTGGCTGTAACTTTCTTCTGGAAGCCACAC-CCAAGACCGCAGCCCTGCTCTAGGGCCCTG---CCCCAACCTCCTGCATCCTTCTCCCTCCTTCTGGGAATATGAACTTGCCCTGCCAGCCTGGCAGCTCCTGGAGGGCAGGACATCAGGGCCTGGACCATGACAGACCCAGGAGTGTCT-GCTGCCAGCGATGCCGGAGCTGGCGCCCACGTCCACATGATGTCCGTGGC
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67701788 244 - 124595110 ---CTCATCTGC-------ATCCAGCTTGCTTACATTCTCTGGCATCTT-TCCTGAGTCCCAAGCTCAACTTTATCCCAAACTG-TCCAG-------------------------CCTA---AGTGAGCTCATGCCCTC---ACC-AGCCGCTGGGGTGCCTCTGGCCCTCCTTCCTGGG---CCCTTGTCAGCCTCTGGGATCCAGCTGTGGCTTCCTTCTGGAGGCCTAAC--------------------------------------------------------------------------------------------------------------------------CCTGAGCTGGGACAGGATCCAGAGAAGCTAGCTGCCAGTGAGGTGGATGC-----------TCCAGCTG-----------
i mm10.chr9                 C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr30              38471078   4 +  40214260 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=4026557.000000
s hg38.chr15_KI270850v1_alt     98027 957 +    430880 ACAGTGGCCACCTGAGGCTGGG--CGCATCTGAGTGGTGGCTGCAGAGTGGGGCCCTTACCTCTGCCTGAGTGAAGTTCACCAGGTCCTCCCCTGTGCTGTCATGCTGGGCGTGGAAGAGCCGGCCTAGCTGGAGGCCCCGCACCACATGGT-AGAGCAGGAGCTGGGGGTCGGTGCCT--------GCTGGCTCTGAGGCTCTGGCTGCTGAGTGGCTGGACGGACTCTGCCAGAGGCAAAAGGGGCCATCAGCCTT----TG-----TGATCCAGGCCGAGGCC-TGTGGCTGCAGAGAGGCAGTGTGAC---CCTGGCATGCCACCCTCAGCTCTGCCCCAGCCCCCCG--CACCCAGGAACGCCCACAATCAGCACACCCACC----TGGG----CAGTC----AGTGTCCGGCTGCCCTCCAGCGAGTGAAGCACTTGCTTCTGGGCCGTCACTCAGAAGCTAAGTGTCTGGAGGAAGTATGTTCACCGTCAGAGAGGCCAAAGTGGATGCCTCCGTCCAGGGCCCCTGGGGACAAG------GGT--GTTGGGTCCAGCTGGCCTGAACTGGCTCCC-CACCTCAGGGTGCCCCCGTGGGCAGCAGAAACCTGGGGCTCGGCCCTCAGCACCCACCTCTGTGTGAGAACAGCACGAGCCCACCATCCAGCTGGGTCTGCTTGAAGCTGCGCACCTCAGTGCCCGGCACCGCCCACTGCACTACCCACCCATTGCTGGGCTGCTTAATGGTGTACACCAGGTCCTT--GGGCCCAGAGTAACCATCCATGCTCCTCAGAGCCTCTGTAGGGATGGGCACGGTGGCCCCCTCCCACATCTGGGGACACAGGCCTGTGAAGGTTCTG-CCC------TGCCACACTTACCCACCCCTTCCTCCCCGGCCCTGGGCTGCCACCAGGGCTCCAACCCCACTGA-GGCTCAGGCCCTCAGGTGGCATCAAGGCTGGCGCTGCTGTGGCTCCCCTGCACAAATGG-CCTCCC--TGCA
s panTro5.chr15              17335226 957 -  83230942 ACAGTGGCCACCTGAGGCTGGG--CGAATCTGAGTGGTGGCTGCAGAGTGGGGCCCTTACCTCTACCTGAGTGAAGTTCACCAGGTCCTCCCCTGTGCTGTCATGCTGGGCGTGGAAGAGCCGGCCTAGCTGGAGGCCCCGCACCACATGGT-AGAGCAGGAGCTGGGGGTCAGTGCCT--------GCTGGCTCTGAGGCTCTGGCTGCTGAGTGGCTGGACGGACTCTGCCAGAGGCAAAAGGGGCCATCAGCCTT----TG-----TGATCCAGGCCGAGGCC-TGTGGCTGCAGAGAGGCAGTGTGAG---CCTGGCATGCCACCCTCAGCTCTGCCCCAGCCCCCCG--CACCCAGGAACGCCCACAATCAGCACACCCATC----TGGG----CAGTC----AGTGTCCGGCTGCCCTCCAGCGAGTGAAGCACTTGCTTCTGGGCCGTCACTCAGAAGCTAAGTGTCTGGAGGAAGTATGTTCACCGTCAGAGAGGCCAAAGTGGATGCCTCCGTCCAGGGCTCCTGGGGATAAG------GGT--GTTGGGTCCAGCTGGCCTGAACTGGCTCCC-CACCTCAGGGTGCCCCTGTGGGCAGCAGAAACCTGGGGTTCGGCCCTCAGCACCCACCTCTGTGTGAGAACAGCACGAGCCCACCATCCAGCTGGGTCTGCATGAAGCTGCGCACCTCATTGCCCGGCACCGCCCACCGCACTACCCACCCATTGCTGGGCTGCTTAATGGTGTACACCAGGTCCTT--GGGCCCAGACTAACCATCCATGCTCCTCAGAGCCTCTGTAGGGATGGGCACGGTGGCCCCCTCCCACATCTGGGGACACAGGCCTGTGAAGGTTCTG-CCC------TGCCACACTTACCCACCCCTTCCTCCCCAGCCCTGGGCTGCCACCAGGGCTCCAACCCCACTGA-GGCTCAGGCCCTCAGGTGGCATCAAGGCTGGCGCTGCTGTGGCTCCCCTGCACAAATGG-CCTCCC--TGCA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        21206 954 -    378907 ACAGTGGCCACCTGAGGCTGGA--CGCATCTGAGTGGTGGCTGCAGAGTGGGGCCCTTACCTCTGCCTGAGTGAAGTTCACCAGGTCCTCCCCTGTGCTGTCATGCTGGGCGTGGAAGAGCCGGCCTAGCTGGAGGCCCCGCACCACATGGT-AGAGCAGGAGCTGGGGGTTGGTGCCT--------GCTGGCTCTGAGGCTCTGGCTGCTGAGTGGCTGGACGGACTCTGCCAGAGGCAAAAGGGGCCATCAGCCTT----TG-----TGATCCAGGCCGAGGCC-TGTGGCTGCAGAGAGGCAGTGTGAC---CCTGGCATGCCACCCTCAGCTCTGCCCCAGCCCCCCG--CACCCAGGAACGCCCACAATCAGCAAACCCACC----TGGG----CAGTC----AGTGTCCGGCTGCCCTCCAGCGAGTGAAGCACTTGCTTCTGGGCCGTCACTCAGAAGCTAAGTGTCTGGAGGAAGTATGTTCACCGTCAGAGA--CCAAAGTGGATGCCTCCGTCCAGGGCTCCTGGGGACAAG------GGT--GTTGGGTCCAGCTGGCCTGAGTTGGCTCCC-CACCTCAGGGTGCCCCTGTGGGCAGCAGAAACCTGGGGCTCGGCCCTCAGCACCCACCTCTGTGTGAGAAGAGCACGAGCCCGCCATCCAGCTGGGTCTGCATGAAGCTGCGCACCTCAGTGCCTGGCACCGCCCACCACACTACCCACCCATTGCTGGGCTGCTTAATGGTGTACACCAGGTCCTT--GGGCCCAGAGTAACCATCCATGCTCCTCAGAGCCTCTGTAGGGATGGGCACAGTGG-CCCCTCCCACATCTGGGGACACAGGCCTGTGAAGGTTCTG-CCC------TGCCACACTTACCCACCCCTTCCTCCCCGGCCCTGGGCTGCCACCAGGGCTCCAACCCCACTGA-GGCTCAGGCCCTCAGGTGGCATCAAGGCTGGCGCTGCTGTGGCTCCCCTGCACCAATGG-CCTCCC--TGCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95268550 971 + 121039945 ACAGCGGCCACCTGAGGCTGGG--AGTGTCCGAGTGGTGGCTGCAAAGTTGGGCCCTTACCTCTGCCTGAGTGAAGTTCACCAGGGCCTTCCCTGTGCTGTCCTGCTGGGCGTGGAACAGCCGGCCTAGCTGGGGGCCCCGCACCACACGGT-AGAGCAGGAGCTGGGGGTCGGTGCCTGCGCTGGAGCTGGCTCTGAGGGTCTGACTGCTGAGTGGCTGGACGGACCCTACCAGAGGCAAAAGGGGCTATCATATTTTGACTG-----GGAGCCAGGCCCAGGCC-TGTGTTTGCAGAGAGGCAGCGTGAC---CCTGGCATGCCACCCTCAGCTCTGCCCCAGCTCCCAG--CACCCAGGAATGCCCACGATCAGCACACCCACC----TGGGCAGACAGTC----AGTGTCCGGCTGCCCTCCAGCGAGAGGAGCACTTGCTTCTGGGCCATCACTCGGAAG--AAGTATCCAGAGGAAGTGTGCTCGCCGTCAGAGAGGCGGAAGCGGAAGCCTCCATCCAGGGTTCCTGGGGACAGG------GGC--ATTGGGTCCAGCTGGCCTGAGCTGGCTCCC-CATCTCAGGGCACCCCCATGGGCAGCAGGAACCCGGGGCCCAGCCCTCAGCACCCACCTCTGTGTGAGAACAGCACGAGCCTGCCGTCCAGCTAGGCCTGCGTGAAGCTGCGCACCTCGGTGCCCGGCGCCCCCAACAGCACTACCCGCCCGTTGCTGGGCTGCTCGATGGTGTAGACCAGATCCTC--GGACTCAGAGTCGCCGTCCATGCTCCTCAGAGCCTCCGCAGGGATGGGCGCAGTGGCCCCCTCCCACATCTGGGAACACAGGCCTGTGAAGGTCCTG-CCT------TGCCACACTCACCCACCCCTTCCTCCCTGGCCCTGGGCTGCCACCAGGGCTCCAGTCCTGCTGC-GGCTAAGGCCCTCAGGTGGCATCGAGGCTGGCGCCACTCTGGCTCCCCTGAACAAAGGG-CCCTCC--CGCA
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50410687 970 -  58131712 ACAGTGGCCATTTGAGGCTGGG--GGTGTCTGAGTGGTGGCTGCAGAGTGGGGACCTTACCTCTGCCTGAATGAAGTTCACCAGGGCCTCCCCTGTGCTGTCCTGCTAGGCGTGGAACAGCTGGCCTAGCTGGAGGCCCAGGACCACACCGT-AgagcaggagctgggggtcggtgcctgcgctggagctggCTCTGAGGCTCTGGTTGCTGAGTGGCTGGACGGACCCTTCCAGATGCAAAAGGGGCCATCATCCTC----TG-----AGATCCAGGCCCAGGCC-TGTGTCTGCAGAGAGGCAGTGTGAC---CCTGGCACACCACCCTCAGCTCTGCCCCAGCTCCTGGCACACCCCGGAATGCCCACAATCAGCACACCCATCCGGGCAGA----CAGTC----AGCGTCTGGCTGCCCTCCAGTGAGAGGAGCACTTGCTTCTGGGCCGCCACTCGGAAG--AAGTGTCTGGAGGAAGTGTGCTTGTCATCAGAGAAGCTGAAGTGGATGCCTCCGTCCAGGGCTCCTGAGGACAGA------GTC--ATTGGGTCTGGCTGGCCTGAGCTGGCTCCT-CATCTCAGGGCACCTCTTCAGGCAGCAGGAACCCAGGGCCCGGCCCTCAGCACCCACCTCTGTGTGAGAACAGCACGAGCCTGCCGTCCAGCTGGGCCTGCACGAAGCTGTGCACCTCGGTGCCCGGCGCTGCCCACAGCACTATCCGCCCTTTGCTGGGCTGCTCAATGGCGTAAACCAGATGCTCAGGGGCCCAGAGTAACTGTCCATGCTCCTCAGGGCCTCCGCAGGGATGGGCGCAGTGGCCCCCTCCCACATCTGGGGACACAGGCCTGTGAAGGTTctg-cct------tgccctgctcacccaccccttcctccccagccctgggctgccACCAGGGTTCCAACT---CTGCTGGCTCAGGCCCTCAGGTGGCATCGAGGCTGGTACTGCTCTGGCTCCCCTGCACAAAGGGCCCTCCC--CACA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       350173 944 -   1458659 ACAGTGGCCACCTGAGGCTGGG--GGCATCTGAGCGGTGGCTGCAGAGTGGGGCCCTTACCTCTGGCTGAGTGAAGTTCACCAGGTCCTCCCCTGTGCTGTCATGCTGGGCATGGAAGAGCCGACCTAGTTGGGGGCCCCGCACCACACATTAAGAGCAGAAGCTGGAGGTTGGTGCCTGCACTGGAGCTGGCTCTGAGGCTCTGGATGCTGAGTGGCTGGACAGACCCTGCCAGAGGCAAAAGGGGCCATCAGCCTT----TG-----TGATCCAGGCCCAGGCC-TGTGGCTGCAGAGAGGCAGCGTGAC---CCTGGCATGCCACTCTCAGCTCTGCCCTAGCCCCCAG--CACCCAGGAATGCCCACAATCAGCACACCCACC----AAGA----CAGAC----AGCGTCCAGCTGCCCTCCAGCGAGAGGAGCACTTGCTTCTGGGCCATCACTC---AG--AAGTGTCTAGAGGAAGTGTGCTCACCGTCAGAGAGGCCAAAGTGGATGCCTCCGTCCAGGGCTTCTGGCGACAGG------GGC--ATTGGGTCTGACTGACCTGAGCTGGCTCCC-CACCTCGGGGTGCTCCTGCGGGCAGCAGGAACCCGGGGCTTGGCCCTCAGCGCCCACCTCTGTGTGAGAACAGCACAAGCCTGCCGTCCAGCTGGGCCTGCGTGAAGCTGCCCACCTCGGTGCCTGGCACCGCCCACAGCACTACCCGCCCATTGCTGGGCTGCTCAATGGTCTAGACCAGGTCCTT--GGGCCCAGAGTAACCATCCATGCTCCTCAGAGCCTCTGTTGGGATGGGCACAGTGGCCTCCTCCCACATCTGGGGACACAGGCCTGTGAAGGTTctg-ccc------tgccatgttcacccaccccttcctccccggccctaggctgcc------------------ctgc-AGCTCAGGCCCTCAGGTGGCATCGAGTTTGGCTCTGCTCTGGCTCCCCTGCACAAAAGGACCTCCC--CGCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3792223 942 -   4111199 ACAGCGGCCACCTGAGGCTGGG--GGCATCTGAGCGGTGGCTGCAGAGTGGGGCCCTTA-CTCTGGTTGAGTGAAGTTCACCAGGTCCTCCCCTGTGCTGTCATGCTGCGTATGGAAGAGCCGACCTAGCTGGGGACCCCGCACCACACAGTAAGAGCAGAAGCTGGAGGTTGGTGCCTGCACTGGAGCTGGCTCTGAGGCTCTGGCTGCTGAGTGGCTGGACGGACCCTGCCAGAGGCAAAAGGGGCCATCAGCCTT----TG-----TGATCCAGGCCCAGGCC-TGTGGCTGCAGAGAGGCAGCGTGAC---CCTGGCATGCCACTCTCAGCTCTGCCCTAGCCCCCA---CACCCAGGAATGCCCACAATCAGCACACCCACT----AAGA----CAGAC----AGTGTCTGGCTGCCCTCCAGCGAGAGGAGCACTTGCTTCTGGGCCGTCACTC---AG--AAGTGTCTAGAGGAAGTGTGCTCACCGTCAGAGAGGCCAAAGTGGATGCCTCCGTCCAGGGCTTCTGGCGACAGG------GGC--ATTGGGTCTGACTGACCTGAGCTGGCTCCC-CACCTCGGGGTGCTCCTGCAGGCACCAGGAACCCGAGGTTTGGCCCTCAGCACCCACCTTTGTGTGAGAACAGCACAAGCCTGCCGTCCAGCTGGGCCTGCGTGAAGCTGCACACCTCGGTGCCTGGCACCACCCACAGCACTACCCACCCATTGCTGGGCTGCTCAATGGTCTAGACCAGGTCCTT--GGACCCAGAGTAACCATCCATGCTCCTCAGAGCCTCTGTTGGGATGGGCACAGTGGCCCCCTCTGACATCTGGGGACACAGGCCTGTGAAGGTTCTG-CCC------TGCCACGCTCACCCACCCCTTCCTCCCCGGCCCTAGGCTGCC------------------CTGA-AGCTCAGGCCCTCAGGTGGCATCGAGTCTGGCGCTGCTCTGGCTCCCCTGCACAAAAGGACCTCTC--CACA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             389630 911 -   3282555 ACAGCGGCCACCTGAGGCTGGA--GGCGTCTGAGTGGTGGCTGCAGAGTGGGGCCCTTACCTCTGCCTGAGTGAAGTTCACCAGGGCCTCTCCCACGCTGTCCTGCTGGGCGTGGAACAGCCGGCCCAGCTGGGGGCCCCGCAGCACACGGT-AGAGCAGGAGCTGGGGCTCGGTCCCGGCGCTGGAGCTGGCTCTGAGGCTCTGGCTGCTGAGTGGCTGCACGGACCCTGCCGGAGGCAGAAGAGACCATCAGCCTT----TG-----GGACCCAGACCCAGGCC-TGTGGCTGCAGAGAGGCAGCGTCAC---CCTGGCATGCGACCTTCAGCTCCTCCCGGGCTCCCAG--CAGCCAGGAA-ACCCAGGGTCAGCACACGCACC----TGGG----CAGACGGTGAGGGTCCGGCTGCCCTCCAGCGAGAGGAGCACCTGCTTCTGGGCTGTCACTCGGAAG--AAGTGTCCGGAGGAAGCGTGCTCGCCGTCAGGGAGGCCGAAGCGGAAGCCTCCGTCCAGGGCTCCTGGGGACGGG------GGC--ATTGGGTCC-GCTGGCCCGAGCTGGCTCCC-CACCCTGGGGCTCCCCCGTGGGCAGCAGGAACCCGGGGCCC-GCCCTCAGCACCCACCTCTGTGTGAGAACAGCACGAGCCCGCCGTCCAGCTGGGCCTGTGTGAAGCTGCGCACCTCGGTGCCCGGCGCCGCCCGCAGCGCCACCTGCCCGTTGCTGGGCTGCTCGATGGTGTAGACCAGGTCCTC--AGGCCCGGAGTCGCCGTCTGTGCTCCTCAGAGCCTCCGCAGGGATGGGCGCCGTGGCCCCCTCCCACATCTGGGGACACGGGCCTGTGACGGTTCTG-CCC------TGCCACGCTCACCCACCCCCTCATCCCCAGCC-------------------------------------------------------TGAGGCTGGCACCGCTCCGGCTCCCCTGCACAAAGGGCCCTCCC--CGAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       179094 965 -   1024465 ACAGTGGCCACCTGAGGCTGGA--GGCGTCTGAGTGGTGGCTGCAGAGTGGGGCCCTTACCTCTGCCTGAGTGAAGTTCACCAGGGTCTCTCCCATGCTGTCCTGCTGGGCATGGAACAGCCGGCCCAGCTGGGGGCCCCGCACCACACGGT-AGAgcaggagctgggggtcggcgccggcgctggagctggctctgaggctctggctgctgAGTGGCTGCACGGACCCTGCCGGAGGCAAAAGACACCATCAGCCTT----TG-----GGATCCAGGCCCAGGCC-TGTGGCTGCAGAGAGGCAGCGTCAC---ACTGGCGTGCGACCTTCAGCTCCTCCCGGGCTCCCAG--CAACCAGGAACGCCCACAGTCAGCACACGCACC----TGGG----CAGACGGTGAGGGTCCGGCTGCCCTCCAGCGAGAGGAGCACCTGCTTCTGGGCTGTCACTCGGAAG--AAGTGTCCGGAGGAAGCGTGCTCGCCGTCAGAGAGGCCGAAGCGGAAGCCTCCGTCCAGGGCTCCTGGGGACGGG------GAC--ATTGGGTCC-GCTGGCCCGAGCTGGCTCCC-CGCCTCAGGGCTCCCCCGTGGGCAGCAGGAACCCGGGGACCGGCCCTCAGCACCCACCTCTGTGTGAGAACAGCACGAGCCCGCCGTCCAGCTGGGCCTGCGTGAAGCTGCGCACCTCGGTGCCCGGCGCCGCCCGCAGCGCTACCCGCCCGTTGCTGGGCTGCTCGATGGTGTAGACCAGGTCCTC--TGGCCCGGAGTCGCCGTCCGTGCTCCTCAGAGCCTCCGCAGGGATGGGCGCCGTGGCCCCCTCCCACATCTGGGGACACGGGCCTGTGAAGGTCCTG-CCC------TGCCACGCTCACCCACCCCTTCGTCCCCGGCC-TGGGCGGCCACCAGGGCTCCAACCCCACTGC-AGCTCAGG-CCTCAGCTGGCATTGAGGCTGGCGCCGCTCTGGCTCCCCTGCACAAAGGGCTCTCCC--CGCA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       980425 965 +   3745603 ACAGCGGCCGCCTGAGGCTGGA--GGCATCTGAGTGGTGGCTGCAGAGTGGGGCCCTTACCTCTGCCTGAGTGAAGGTCACCAGGGCCTCTCCCACGCTGTCCTGCTGGGCGTGGAACAGCCGGCCCAGCTGGGGGCCCCGTACCACACGGT-AgagcaggagctgggggttggccccggcgctggagctggctctgaggctctggctgctgAGTGGCTGCACAGACCCTGTCAGAGGCAAAAGAAACCATCAGCCTT----TG-----GGATCAAGGCCCAGGCC-TGTGGCTGCAGAGAGGCAGCGTCAC---CCTGGCGTGCAAACTTCAGCTCCTCCCGGGCTCCCAG--CAACCAGGAATACCCACGGTCAGCACACACACC----TGGG----CAGACGGTGAGTGTCCGGCTGCCCTCCAGCGAGAGGAGCACCTGCTTCTGGGCTGTCACTCGGAAG--AAGTGTCCAGAGGAAGCGTGCTCACCATCAGAGAGGCCGAAGCGGAAGCCTCCATCCAGGGCTCCTGGGGACGAG------GGC--ATTGGGTCT-TCTGGCCCGAGCTGGCTCCC-CACCTCGGGGCTCCCCTGTGGGCAGCAGGAACCCGGGGCCCGGCCCTCAGCACCCACCTCTGTGTGAGAACAGCACGAGCCCGCCGTCCAGCTGGGCCTGCGTGAAGCTGCGCACCTCGGTGCCCGGCGCCGCCCGCAGCACTACCCGCCCATTGCTGGGCTGCTCGATGGTGTAGACCAGGTCCTC--AGGCCCGGAGTCGCCGTCCGTGCTCCTCAGAGCCTCCGCAGGGATGGGCGCCGTGGCCCCCTCCCACATCTGGGAACACGGGCCTGTGAAGGTCCTG-CCC------TGCCACACTCACTCACCCCTTCCTTCCCGTCC-TGGGTGGCCACCAGGGCTCCAACCCCACTGC-AGCTCAGG-CCTCAGCTGGCATCGAGGCTGGCGCCGCTCTGGCTCCCCTGCACAAAGGTCCCTCCC--CGAA
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67702032 906 - 124595110 ---GCAGCCACCTGAGGTAAGGTTGGGGTCTGTGTGGTGGCTGAGGAGTGAGGCCCTTACCTCAGCCTGGGTGAAGTTCACCAAGACCTCCTCTGCACTTCCTTGCTGGGCATGGAGGAGTCGGCCAAGCTGGGGGCCTCTTACCACCCGGT-AGAGCAGGTGACGAGGGTCAGCGCCTGTGCTGGAACTGGCGCTCAGGCTCTGGCTGCTGAGCGGCTGCACAGACTCTGTGAAGCATGGAGGAGCCTGTTAGCTTT----T-------GACAGGAGCCCAGACA-AG--------------------GGT---CCTGGGCTACCATCCTCCATTCTGCCTCGGC--------TAGCCAGCAT------------GCAGACCTACC----TGGA----CAGACGGTCAACTTCCGGGTGCCCTCCAAGGAGAGGAGTGCCTGCTTCTGGGCCACCACTCGGAAG--AAATGTCCAGGAGAAGTGTGTGCGCCGTCAGAGAGGTCGAAGTGGAAGCCTCCTTCCAGGGCTCCTGAGCACAGGGTGGGTGGA--GCTGGGTCCTGTTGGCCCAAGGTAGCTCCCTCCCCTCAAGGTACCCCCA----CCCCAGGAGGCTGGAGAAC-CCTCTCAGCACCCACCTCTGTGTGAGAACAGCACAAGCCCACTGTCCAGCTGGGCCTGTGTGAAGCGGTGGACCTCGGTGTCTGGTGCCACCCTCAAGGCGATCCGTCCGTTGCTGGGCTGCTCGATGGTGTAGACCAAGTCTTC--TGGGCCCGAATCATTGTCTGTTCCCCTGAGGGCCTCAGGAGGGATGGGCACAATGGCCCCCTCCCAGATCTAGGGACACAGACC-GTGAAAGTCCTG-TCCACATTGTGTC---CTTTCCATCCCTTTCCTCCTGGCCCTTGGACTTTCACCAGGCCCCCAACC--------TGCTCTG---CCCGGCTGTCATGGACACCTGTGCCATTCTGAGCCTTCT---------------TT--CTCA
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38471082 889 +  40214260 ACAGTGGCT-CCCAGGACGCAG--GGAGTCT-AGTGGCGGCTGTAGAGGTGGGGCCCTACCTCGGCTTGCGTGAAGTTCACCAGGACCTCCCCGGTGCCGCCCTGCTGGGCGCGGAGCAGGCGGCCCAGCCGGGGGCCCTGCACCACCCGGT-AGAGCAGGTGCTGCGGATCGGTGCCGGCACTGGAGCTGGCTCTCAGGCTCTGGCTGCTGAGCGGCTGGACCGACCCTGCGAGACACATCAGGGCCCCGCTGGCCT----CGGACCAGGAGGCAGGGCGAGGCCGTGCGCCTGC--GGGGGCAGCGTGACGGGCCGGGC------------------CCCGGGCCCAC----GAGGCAAGCGCGCCGG------GCGGACCCACC----TGGG----CACACGGTCAGCGTCCGGCTGCCCTCCAGGGAGAGGAGCAGCTGCTTCTGGGCCGTCACGCGGAAG--AAGTGTCCGGGGGAAGCGTGCTCGCCGTCGGACAGGCTGAAGCGGAAGCCTCCGTCCAGGGCTCCTGAGGACGGG------CGTAGAGTGGGTCTCGCTGGCCCCCGCGGG-TCCC-CGTCCGCAGGCGCCCC-------------------------AGCCGGCGGTACCCACCTCTGTGTGAGAACAGCACGAGCCCGTCGTCCAGCTGGGCCTGCGTGAAGCTGTGCACCTCGGTGCCTGGCGCCGCCCGCAGCACCACCTGCCCGTTGCTGGGCCGCTCGATGGTGTAGACCAGGTCCTC--CGGGCCCGAGTCGCTGTCCGCACCCCTCAGGGCCTCCGGAGGGAAGGGCACGGTGGCCCCCTCCCACATCTGGGGACACAGGCCCGTGAGGGTTCCGTCCC------CGCCGAGCGGAGCACTCC------CACTGGCTC--------------------------------AGCTCAGGCCTTGGGCGGTCACCGAGGCCCGCGTCCTCCTGGGCTCCCCCTCCCAAGGGCCCCTCCAGCCCA
i canFam3.chr30             I 4 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=2271172.000000
s hg38.chr15_KI270850v1_alt     98984 613 +    430880 TTCACC-TT-CCCTGTC------------ACCCC-------------AGGGAAGGC------------CACCCTCCAGGCCCAGCATCCCTGCTCTTCATCTGTCCTAGTCCTGTGTGTCCCTCAAGACCAGCTTGTGTAC-CCAACCCAGGAAGGCCCTAGCTCTTA--------CCGTCACCAAGTTCTCAC-CCCCAGAAA-CCCCCAGCGCTGACCAACAGTGCTCCTTAATC------TAGCTCACTGGTGGGGCAGCAGTCTCCTTTCAGACC-CTCCAT-G---TGTGC---CT-GG--CAGGGGCTGGGCACA-G----GTGGGAACAGTGAT------------------TTTAGAAACGAGCACTCCTTCCAGCTAAGGGAGGGGTGGGAGGCGC--AGAGAGCTG-------AAGCCTGATGG-TTGGCACTGTCCTGCAGCACAGAAGCAGTGC-TGGGATGGGCCCAGGTGCTTCCAGAGCAGTTACGGGCCCTCCTCGTGTTGGGCA----------------------------------AAGGGGGCCCCTTTTCAGG-----CCTCCCACTAGCAAGCAGAACAGGCACCCGTTCCTGAGGTCCTG-GTACCACTCTT--GCTGGGTCAATTACTTGTGGGCAGTGCTGCAGTGGGACTCACATGCCCAGAAAAC--AGCCCTCTGGCATTCCTGGGCTTCCTCCCCTGGCCGCAGGGAGCCCTCAGGCCGAGCCTTGGCA
s panTro5.chr15              17336183 613 -  83230942 TTCACC-TT-CCCTGTC------------ACCCC-------------AGGGAAGGC------------CACCCTCCAGGCCCAGCATCCCTGCTCTTCATCTGTCCTAGTCCTGTGTGTCCCTCAAGACCAGCTTGTGTAC-CCAACCCAGGAAGGCCCTAGCTCTTA--------CCCTCACCAAGTTCTCAC-CCCCAGAAA-CCCCCAACGCTGACCAACAGTGCTCCTTAATC------TGTCTCACTGGTGGGGCAGCAGTCTCCTTTCAGACC-CTCCAT-G---TGTGC---CT-GG--CAGGGGCTGGGCACA-G----GTGGGAACAGTGAT------------------TTTAGAAACGAGCACTCCTTCCAGCTAAGGGAGGGGTGGGAGGCGC--AGAGAGCTG-------AAGCCTGATGG-TTGGCACTGTCCTGCAGCACAGAAGCAGTGC-TGGGATGGGCCCAGGTGCTTCCAGAGCAGTTACGGGCCCTCCTCGTGTTGGGCA----------------------------------AAGGGGGCCCCTTTTCAGG-----CCTCCCACTAGCAAGCAGAACAGGCACCTGTTCCTGAGGTCCTG-GTACCAGTCTT--GCTGGGTCAATTACTTGTGGGCAGTGCTGCAGTGGGACTCACATGCCCAGAAAAC--AGCCCCCTGGCATTCCTGGGCTTCCTCCCCTGGCCGCAGGGAGCCCTCAGGCCGAGCCTTGGCA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        22160 613 -    378907 TTCACC-TT-CCCTGTC------------ACCCC-------------AGGGAAGGC------------CACCCTCCAGGCCCAGCATCCCTGCTCTTCATCTGTCTTAGTCCTGTGTGTCCCTCAAGACCAGCTTGTGTAC-CCAACCCAGGAAGGCCCTAGCTCTTA--------CCCTCACCAAGTTCTCAC-CCCCAGAAA-CCCCCAACGCTGACCAACAGTGCTCCTTAATC------TGTCTCACTGGTGGGGCAGCAGTCTCCTTTCAGACC-CTCCAT-G---TGTGC---CT-GG--CAGGGGCTGGGCACA-G----GTGGGAACAGTGAT------------------TTTAGAAACGAGCACTCCTTCCAGCTAAGGGAGGGGTGGGAGGCGC--AGAGAGCTG-------AAGCCTGATGG-TTGGCACTGTCCTGCAGCACAGAAGCAGTGC-TGGGATGGGTCCAGGTGCTTCCAGAGCAGTTACGGGCCCTCCTCGTGTTGGGCA----------------------------------AAGGGGGCCCCTTTTCAGG-----CCTCCCACTAGCAAGCAGAGCAGGCACCCGTTCCTGAGGTCCTG-GTACCAGTCTT--GCTGGGTCAATTACTTGTGGGCAGTGCTGCAGTGGGACTCACATGCCCAGAAAAC--AGCCCTCTGGCATTCCTGGGCTTCCTCCCCTGGCCGCAGGGAGCCCTCAGGCCGAGCCTTGGCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95269521 626 + 121039945 TTCACC-TT-CCCTGTCACCCCAGGGAAGACCCC-------------AGGGAAGGT------------CACCCTCCAGGCCCAGCCTCCCTGCTCTCCATCTGCCCTAGTCCTGCATGTCCCTCAAGGCCAGCTTATATCC-CCTACCCAGTAAAGCCCCAGCTCTTA--------CCCTCACCAAGTTCTCAC-CCCCAGAAA-CCCCCAACGCTGACCAACAGTGCTCCTTAATC------TGTCTCACTGGTGGGGGAGGGGTCTCCTTTCAGAGC-CTCTGT-G---TGTGC---TT-GG--CTGGGGCTAGGCACA-G----GTGGGAGTGGGGAT------------------TTTAGAAACAGGCCCTCCTTCCAGCTGAGGGAGGGGTGGGTGGTGC--GGAGAGTGG-------GGTGCTGATGG-TTGTCACTGTTCTGCAGAACAGAATCAGCA--TGGGATGGGCCCAGGTGCTTCCAGAGCAGTTACAGGCCCTCCTCATGTTGGGCA----------------------------------AAGGGGACCCCTTTTCAGG-----CCTCCCACTTGCAAGCAGAGCAGGTGCCTGTTCCTGAGGTCCTG-GTACCAGTCTT--GCTGGGTCAATTACTTGCGGGCAGAGCTGCAGTGGGACTCACATGCTCGGAAAACAGAGCCTTCAGGCATTCCTGGGCTTCCTCCCCTGGCCCCAGGGAGCCCTCAGGCCCAGCCCTGGCA
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50411657 625 -  58131712 TTCACC-TT-CCCTGTC------------ACCCC-------------AGGGAAGGCCCCAGGGAAGGTCACCCTCCAGGCCCAGCCTCCTTGCTCTCCATCTGCCCTAGTCCTGCGTGTCCCTCAAGGCCAGCTTGTGTCC-CCTACCCAGGAAGGCCCCTGTTCTTA--------CCCTCACCAAGTTCTCAG-CCCCAGAAA-CCCCCAACGCCGACCAACAGTGCTCCTTAATC------TGTCTCACTGGTGGGGCAGGGGTCTCCTTTCAGAGC-CTCCGT-G---TGTGC---CT-GG--CCAGGGCCGGGCACA-G----GTGGGAATGGTGAT------------------TTTAGAAACGGGCCCTCCTTCCAGCTGAGGGAGGGGTGGT-GGTGC--GGAGAGTGG-------GGGGCTGATGG-TTGGCA-TGTTCTGCAGCACAGAATCAGCGC-TGCGATGGGCCCAGGTGCTTCCAGAGCAGTTACGGGCCCTCCTCATGTTGGGCG----------------------------------AAGGGGACCCCTTTTCAGG-----CCTCCCACTTGCAAGCAGAGCAGGCGCCTGTTCCTGAGGTCCTG-GTACCAGTCTT--GCTGGGTCAATTACTTGCAGGCAGAGTTGCAGTGGGACTCACATGCCCGGGAAACAGAGCTTTCTGGCATTCCTGGACTCCCTCCCCCGGCCCCAGGGAGCCCTCAGGCTGAGCCTTGGCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       351117 605 -   1458659 TTCACC-TT-CCCTGTC------------ACCCC-------------AGGGAAGGC------------CACCCTCCAGGCCCAGCCTCCCTGCTCTTCATCTGCCCTAGTCCTGTGTGTCCCTCAAGACCAGCTTGTGTCC-CCTACCCAGGAAGGCCCCAGTTCTTA--------CCCTCAGCAAGTTCTCAC-CCCCAGAAA-CCCCCAACGCTGACCAACGGTGCTCCTTAATC------TGTCTCACTCGTGGGACAGGGGTCTCCTTTCAGACC-CTCCAT-G---TATGC---CT-GG--CAGGGGCTGGGCACA-G----GTGGGAATGGTGAT------------------TTTAGAAATGGGCCCTCCTTCCAGCTGAGTGAGGGGTGGGAGGTGC--AGAGAGTTG-------GGGGCTGATGG-TTGGCGCTGTCCCCTAGCACAGAAGCAGTGC-TGGGATGG--------GCTTCCAGAGCAGTTACGGGCCCTCCTCGTGTTGGGCA----------------------------------AAGGGGACCCCTTTCCAGG-----CCTCCCACTTGCAAGCAGAGCAGGCGCCTGTTCCTGAGGTCCTG-GTACCAGTCTT--GCTGGGTCAATTACTTGAGGGCAGTGCTACAGGGGGACTCCCATGCCCGGAAAAC--AGCCCTCTGGCATTCCTGGGCTTCCTCCCCCGGCCCTAGGGAGCCCTCAGGCCAAGCCTTGGCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3793165 613 -   4111199 TTCACT-TT-CCCTGTC------------ACCCC-------------AGGGAAGGC------------GACCCTCCAGGCCCAGCCTCCCTGCTCTTCATCTGCCCTAGTCCTGCGTGTCCCTCAAGACCAGCTTGTGTCC-CCTACCCAGGAAGGCCCCAGTTCTTA--------CCTTCACCAAGTTCTCAC-CCCCAGAAA-CCCCCAACGCTGACCAACAGTGCTCCTTAATC------TGTCTCACTCGTGGGACAGGGGTCTCCTTTCAGACC-CTCCAT-G---TGTGC---CT-GG--AAGGGGCTGGGCACA-G----GTGGGAATGGTGAT------------------TTTAGAAATGGGCCCTCCTTCCAGCTGAGGGAGGGGTGGGAAGCAT--GGAGAGTTG-------GGGCCTGATGG-TTGGCACTGTCCTGCAGCACAGAAGCAGTGC-TGGGATGGGCCCAGGGGCTTCCAGAGCAGTTACGGGCCCTCCTTGTGTTGGGCA----------------------------------AAGGGGACCCCTTTCCAGG-----CCTCCCACTTGCAAGCAGAGCACGCTCCTATTCCTAAGGTCCTG-GTACCAGTCTT--GCTGGGTCAATTACTTGCGGGCAGCGCTACAGTGGGACTCACATGCCCGGAAAAC--AGCCCTCTGGCATTCCTGGGCTTCCTCCCCTGGCCCTAGGGAGCCCTCAGGCCAAGCCTTGGCA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             390541 624 -   3282555 TTCACC-TT-CCCTGTC------------ACCCCAGGGAAGGCCCCAAGGGAAGAC------------CACCCTCCAGGCCCAGCCTCCCTGCTCTGCATCCAGCCTAGT-CCGTGTGTCCCTCAAGGCCAGCTTGTGTCC-CCTGCCCAGGAAGGCCCCAGCTCTCA--------CCCTCACCAAGTTCTCAC-CCCCAGAAA-CCCCCGACCCTGACCAACAGTGCCCCCTAATT------TGCCTCGCTGATGGCGCCGGGGTCTCCTTTGAGGCC-CTCCAT-G---TGTGT---CT-GG--CAGGGGCTGGGCAT--G----GTGGGAACAGTGAT------------------TTTGGAAATGGGCCCTCCTTCCAGCTGAGGGAGGGGTGGGACGCGC--GGAGAG-TG-------GGGGCCGATGG-CTGGCAGTGTCCT-CGGCCCAGAAGCAGCGC-TGGGACGGG-CCAGGTGCTTCCAGAGCAGTTCTGGGCCCTGCTCATGCTGGGCG----------------------------------AAGGGGACCCCGCTTCAGG-----CCTCCCACGTGCAAGCAGAGCCGGCGCCGGTTCCTGAGCTCCTGAGGGCTGGTCTT--GCTGGGCCCATTATTTGTGGGCAGAGCTGGCATGGGGCTCACATGCCCGGAAAATGGAGCCCTTTGGCAGTCCTGGGCCCTCTCCCCTGGCCCCAGGGAGCCCTCAGGCCCAGCCCTGGCA
i saiBol1.JH378276          C 0 M 688
s cebCap1.NW_016107979v1       180059 625 -   1024465 TTCACC-TT-CCCTGTC------------Accccagggaaggcccc-agggaaggc------------TGCCCTCCAGGCCCAGCCTCCCTGCTCTCCATCTGCCCTAGTCCCATGTGTCCCTCAAGGCCAGCTTGTGTCC-CCTGCCCAGGAAGGCCCCAGCTCTTA--------CCCTCACCAAGTTCTCAC-CCCCAGAAA-CCCCCGACCCTGACCAACAGTGCTCCCTAATT------TGCCTCGCTGATGGGGCCGGGGTCTCCTTTCAGGCC-CTCCAT-G---TGTGT---CT-GG--CAGGGGCTGGGCAC--G----GTGGGAACGGTGAT------------------TTTGGAAATGAGCCCTCCTTCCAGCTGAGGGAGGGGTGGGACGTGC--AAACTG-GG-------TGGGCTGATGG-CTGGCAGTGTCCTGCGGCACAGAAGCAGTGC-TGGGACGGG-CCAGGTGCTTCCAGAGCGGTTCCGGGGCCTGCTCATGCTGGGCG----------------------------------AAGGGGACCCCTCTTCAGG-----CCTCCCACCGGCCAGCAGAGCAGGTGCCGGTTCCTGAGGTCCTGAGGTCTGGTCTT--GCTGGGCCGATTATTTGCAGGCAGTGCTGGCGTGGGGCTCACATGCCCAGAAAATGGAGCCCTCTGGCATTCCTGGGCCCTCTTCCCCGGCCCCAGGAAGCCCTCAGGCCCAGCCATGGCA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       981390 613 +   3745603 TTCACC-TT-CCCTGTC------------ACCCC-------------AGGGAAGGC------------CACCCTCCAGGCCCAGCCTCCCTGCTCTCCATCTGCCCTAGTCCCAAGTGTCCCTCAAGGCCAGCTTGTGTCC-CCTGCCCAGGAAGGCCCCAGCTCTTA--------CCCTCACCAGGTTCTCAC-CCCCAGAAA-CCCCTGACTCTGACCAACAGTGCTCCCTAATT------TGCCTCACTGATGGGGCCAGGGTCTCCCTTCAGGCC-CTCCAT-G---TGTGT---CT-GG--CAGGGGCTGGGCAC--G----TTGGGAATGGTGAT------------------TTTGGAAATGGGCCCTCCTTCCAGCTGAGGGAGGGGTGGGACACGCAGAGAGTG-GG-------TGGGCTGAGGG-CTGGCAGTGTCCTGCAGCACAGAAGCAGCGC-TGGGACGGG-CCAGGTGCTTCCAGAGCAGTTCCGGGCCCTGCTCATGCTGGGCG----------------------------------AAGGGGACCCCTCTTCAGG-----CCTCCCAC-GGCAAGCAGAGCAGGTGCCAGTTCCTGAGGTCCTGAGGTCTGGTCTT--GCTGGGCCAATTATTTGCGGGCAGTGCTGGCATGGGGCTCACATGCCCGGAAAATGGAGCCCTCTGGCATTCCTGGGCCCTCTCCCCCGGCCCCAGGGAGCCCTCAGG-CCAGCCCTGGCA
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67702938 530 - 124595110 TTCTCC-TT-TTCTGTC------------ACGC--------------AGG------------------TTCC--------------------TTCTCCACCAGCCCTGATCTTAATTGTACCTCAAAGCCAGACCACAACCTCCTGCCTAGAAATGTTCCTGTTT--------------------GGTCCTTA--CTTCAGAGA-TCCCTGTCCCTGACCAAAGGTGCTGCCGG----------GTCTCCCTGGTGGGG--GGGCCTTCCCTTTCCTCC-TGCCAT-GGCATATACCATCT-GG--CGCGGG-TGGGCACA-GGACAGAGGCAATGGTGTTGGCCA---GCGCAGAACACTTAGAAATAGGCTCTCCTGCCAGTTGAAGCTCGGGAGGGAGGC----GGAGAGCGG-------AGAGCTGATTC-CTGAT----TCCTA---------------GC-TGAATCGG--CTAGGAA--TCCA------------------CCCGTGCAGTGCA----------------------------------GGGGAGGCCCCAT---AGG-----CTACCCACC--CACGCAGGGCAAGGTCTTCTTCCAGAG-CCCTG-TTCCATGTGGC--ACAGGGCCAGTCAC-TGAGGCCATTCTGGGTACGAGGCCCTCAT-CTCAGAAAAC--GTCCTTCTAAAACCCAGGAGCTGCTTCTCCC--TCCCAGAG---TCCGAGAGTAAGTT------
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38471971 605 +  40214260 GTGACC-TTCCCCTGCC------------ACCCC-------------GGG-----------------------------CCCAGGCTCCCTTCTCTCC----GCCCTGATCCTGCTTGTCCTGCGAGGCCAGC------CC-CCCGCTC-----------------TT--------CCCTCACCAGGCTCTCCC-CGCCGCAGAGCCCCCAGCCCCGACCCGCGGCAGCACCGCGAC------CGTCT--------------GGCCCTGCCTCCTGGGC-----AC-G---TGGGT---CTGGG--GACGGGCTGGGCACACT----ACGGGAATGGTGAGGGTCGCGTCCCCAAGACGCTGATAAACACACTCCCTTTCCAGGTGAGGGAAGGACGGGAGGCTC--GGGGTGGGA-------AAGGCTGATGC-TTGGCCCCTGTCCGTGGCCTGGAAGCAGCACGTGACGAAGGCTCGTGTGTTTCCAGCGTGGTCACGAGGCCCACCCAGGTCAGGGAGGGGTGCGGGCAGCCCCACCCCAGGCTCAGAGGGAAGAGGAGTCCCTGTCGGG-----CCTCCCACCTGCCAGCAGGGCAGGATCCCGTTTCTGGGATCCTG-TTACATGGCCCCAGCTGGGTCAGGACCTTG--GGCTGCCTTAGGGAGGGGCTCCCAGCCCCGGAAAACCGAGCCCTCTGGGATCCCAGGG--ACCTTCTCAGTCCCAGGCTAACCCCCGGG--GAGCCCTGGA-
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             831900 569 +   1040364 TTCACCGTT-CCCTGTG------------ACCTC-------------AGG------------------C----------CCCAGAACCCCTCCTTTCCATGTACCCCAGTGCTGCCGGTCCCTCCAGGCCAGCTCAGG-CC-CCTCCTCAGGAA-GCCCCAGCTCTTAAATGCCCCCCCCCCACAAGTGCTTGCTCCCCAGAAA-CTCCC-ACCCTGAACGACAGTGCTGCTTAATCTGGCTGTGTCTTCCTGGTAGGCCTGG----TCTCCTCGGACCCCTCCACAG---CACAT---CT-GGGCAGGGGGCTGGGCACATG----GTGGCAATGTTGGT------------------TTTTG---------CCCTGTCCAATATAGTTA----------------AAATATCTGCCCTTTCAGGACTGAAAGCCTGGC---GTCATGCAGCACTAAGGCAGCTC-TGGGTGAGGGCCAGGTGTTCCCAGCATAGTCTTGGGTCCCAGGCAGG-GGGGCG----------------------------------AGGGGTGCCTGCTTGCAGACAGCCCCTCCCCATGCTCAGCAGGACAGGATCCCGT-------GTCCCA-G---CCATCCT--CCCGGGTCAACAACTTGCGAACAGTGTT-TGGAGGGACTCCCATGCCCCCAGAACAGAGTCTGCTGGGATTCCTGGGCTCTACCTGCGGT------AGAGCTCTAGAG-------------
i dasNov3.JH572216          N 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=341449.000000
s hg38.chr15_KI270850v1_alt     99597 107 +    430880 AGAGGGGCCATACTGTGGGA-GGCA------GGGCCCCATCA-CTGGGCTCCC-GGAACAAACACGGGTAGATGGCACCACCTGGTGGCCGCACTGCCACACAGCCATCCCAGCCT
s panTro5.chr15              17336796 107 -  83230942 AGAGGGGCCATACTGTGGGA-GGCA------GGGCCCCATCA-CTGGGCTCCC-GGAACAAACACGGGTAGATGGCACCACCTGGTGGCCGCACTGCCACACAGCCATCCCAGCCT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        22773 107 -    378907 AGAGGGGCCATACTGTGGGA-GGCA------GGGCCCCATCA-CTGGGCTCCC-GGAACAAACGCGGGTAGATGGCACCACCTGGTGGCCGCACTGCCACACAGCCATCCCAGCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95270147 109 + 121039945 GGAGGGGCCATAATGTTGCAGGGCA------GGACCCCAGCACCTAGGCTTCT-GGAGCAAACACAGGTGGATGGCACCACCTGGTGGCTGTGCTGCCACACAGCCGTCCTGGCCT
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50412282 107 -  58131712 GGAGGGGCCATAATGTGGGG-AGCA------GGGCCCCATCG-CAGGGCTCCC-GGAGCAAACATGGGTGGATGGCACCACCTGGTGGCCGTGCTGCCACACAGCCGTCCTGGCCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       351722 107 -   1458659 GAAGGGGCCATAGTGTCGGG-GGCA------AAGCCCCATCG-CTGGGCTCCC-GGAGCAAACACAGGGGGATGGTCCCACCTGGTGGCCACACTGCCACACAGCCATCCCGCCCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3793778 107 -   4111199 GGAGGGGCCATAGTGTGGGG-GGCA------GGGCCCCATCA-ATGGTCTCCC-GGAGCAAATACAGGGGGATGGTCCCACCTGGTGGCCATGCTGCCACACAGCTATCCCACTCC
i colAng1.NW_012116021v1    C 0 C 0
s cebCap1.NW_016107979v1       180684 107 -   1024465 TGAGGGGCCTTAATGTGGGG-GGCA------GGGCCCCAGCG-CTGGGCTCCT-GGAGCAAGCACGGGTGGATGGCCCCACCTGGTGGCCGCGCTGCCACACAGCCGTCCCGGCCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       982003 106 +   3745603 GGAGGGGCCTTAATGT-GGG-GGCA------GGGCCCCAGCG-CTGGGCTCCT-GGAGCAAACACGGGTGGATGGCCCCACCTGGTGGCCGTGCTGCCACACAGTCGTCCCGGCCT
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67703468  83 - 124595110 --------------------------------AAAACCAGTG-TTGGACTCCAGGGGGCTAACATGGGTGGATATTGCCACCTAGTGGCCAATTTACCACACATCATTTCCAACTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38472576 109 +  40214260 AGGGGGAGCACGGTGCGGTG-CGCAGAGATGGGGCTTCAGCG-CGGGG---CC-TGCGCAAACGCTGA-GGACAGCATCACCTGGTGGCCAAGGGGCCACACAGCAGCACCGGCCT
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             832469  81 +   1040364 GGAGGGGCCACAATGT-ACG-GGTG------AGACTTTAGCC-CTGGGCTCCT-GGAGCAAACATGGGTGGATGGCGCCACCTGGTGGACC-------------------------
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             391165 688 -   3282555 M

a score=71496.000000
s hg38.chr15_KI270850v1_alt     99704 27 +    430880 GTGGTTCCAGG--GTGCTGTGTCCCACTC
s panTro5.chr15              17336903 27 -  83230942 GTGGTTCCAGG--GTGCTGTGTCCCACTC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        22880 27 -    378907 GTGGTTCCAGG--GTGCTGTGTCCCACTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95270256 27 + 121039945 GTGGTTCCAGA--GCACTGTGTCCCACTT
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50412389 27 -  58131712 GTGGTTCCAGA--GCACTGTGTTAAGCTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       351829 27 -   1458659 GTGGTTCCACG--ACGCTGTGTACCACTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3793885 27 -   4111199 GTGGTTCCACG--ACGCTGTGTCCCATTC
i colAng1.NW_012116021v1    C 0 C 0
s cebCap1.NW_016107979v1       180791 27 -   1024465 GTGGTTCCTGA--GCGCTGTGTCCCACTC
i cebCap1.NW_016107979v1    C 0 I 390
s aotNan1.NW_018511953v1       982109 27 +   3745603 GTGGTTCCTGA--GCGCTGTGTCCCACTC
i aotNan1.NW_018511953v1    C 0 I 4
s canFam3.chr30              38472685 29 +  40214260 GTGGTTCCGGGCAGCCCCGAGCCGCACCC
i canFam3.chr30             C 0 I 6
s dasNov3.JH572216             832550 13 +   1040364 ---GTTGCTGG--GTCCT-----------
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  67703551  0 - 124595110 C
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             391165 688 -   3282555 M

a score=186963.000000
s hg38.chr15_KI270850v1_alt     99731 79 +    430880 TTCTGTGGCGTCCGCACCATGAGGCCACCCCCTACAGGCACATCCTAGACCACCAAAGCCCCCC---------------GGTGCCCCATGTCAG
s panTro5.chr15              17336930 79 -  83230942 TTCTGTGGCCTCCGCACCATGAGGCCACCCCCTACAGGCACATCCTAGACCACCAAAGCCCCCC---------------GGTGCCCCATGTCAG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        22907 78 -    378907 TTCTGTGGCCTCCACACCATGAGGCCACCCCCTACAGGCACATCCTAGACCACCAAAG-CCCCC---------------GGTGCCCCATGTCAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95270283 94 + 121039945 TTCTGTGGCTTCCGCACCACCAGGCCGCCCCCTACGGGCACATCCTAGACCACCAAGGCCCCCCCCAACCGCCGCCCCAGGCACCCCATGTCAG
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50412416 81 -  58131712 TCCTGTGACCTCCGCACCATGAGGCCACCCCCTATGGGCACATCCTAGACCACCAAAGCCCCACTC-------------AGCGCCCCATGTCAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       351856 80 -   1458659 TTCTGTGGCCTCCACATCATGAGGCCA-CCCCTACAGGCACAGCCTAGACCACGAAAGCCCCCCGC-------------GGTGCCCCATGTCAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3793912 81 -   4111199 TTCTGTGGCCTCCGCACCACGAGGCCACCCTCTACAGGCACATCCTAGACCACCAAAGCCCCCCAC-------------GGTGCCCCATGTCAG
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1       982140 79 +   3745603 TTCAGCGGCCTCCCCACCACCAGGCCGCCCTCTATGGGCACATCCTAGACCACCAAAGCCCCCC---------------AGCGCCCCACATCAG
i aotNan1.NW_018511953v1    I 4 C 0
s canFam3.chr30              38472720 76 +  40214260 CTCTGCGGCCGCCCCACCCCTGGACCACTCCCCACAGCCACAGCCTCTGCCATCAAAGGCGTCC---------------GGTGTCC---ATCAG
i canFam3.chr30             I 6 C 0
s dasNov3.JH572216             832563 42 +   1040364 -----------------------------CGCCATAGGCACATCCT--------GACGATTCCC---------------AGCGTCCCATGTCAG
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  67703551  0 - 124595110 C
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       180818 390 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             391165 688 -   3282555 M

a score=82617.000000
s hg38.chr15_KI270850v1_alt     99810 36 +    430880 AGACAGCCCAAGTCAGCCCTCTTGCGGAACCTT-CAG
s panTro5.chr15              17337009 36 -  83230942 AGACAGCCCAAGTCAGCCCTCTTGCGGAACCTT-CAG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        22985 36 -    378907 AGACAGCCCAAGTCAGCCCTCTTGCGGAACCTT-CAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95270377 36 + 121039945 AGACAGCCCAAGTCAGCCCTCTTATGGAAACTT-CAG
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50412497 36 -  58131712 AGACAGCCCAAGTCAGCTCTCCTGTGGAACCTT-CAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       351936 36 -   1458659 AGACAGCCCAAGTCAGCCCTCTTGTGGAACCTT-CAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3793993 36 -   4111199 AGACAGCGCAAGTCAGCCCTCTTGTGGAACCTT-CAG
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1       982219 35 +   3745603 AGACAGCCCAAGTCAGCCCTC-TGTGGAACCTT-CAG
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67703551 29 - 124595110 AGGCATCCC---TTAGTTATCTAG----ACCCT-CAG
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38472796 24 +  40214260 GCCCTGCCC--GTCCACCATCTCGTG-----------
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             832605 33 +   1040364 AGACAGCCC--GTCA-TCCTCCTTTGAAACCTTGCA-
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       180818 390 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             391165 688 -   3282555 M

a score=314819.000000
s hg38.chr15_KI270850v1_alt     99846 127 +    430880 TGGCTTCTGCTGACTGGGGAGGACGCGCCCCAGAAGCTG---------------GGGTTCAAAGCCCTGCCACGTGGGCTTAGTAAAGCCATGCCCTTTCTgttccaccag-aactacttttgcaatcatggagaagttccat
s panTro5.chr15              17337045 127 -  83230942 TGGCTTCTGCTGACTGGGGAGGACGCACCCCAGAAGctg---------------gtgttcaaagccctgccatgtgggctcagtaaacccatgccctttctgttccaccag-aactacttttgcaatcatggagaagttccat
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        23021 127 -    378907 TGGCTTCTGCTGACTGGGGAGGACGCATCCCAGAAGCTG---------------GTGTTCAAAGCCCTGCCATGTGGGCTTAGTAAACCCATGccatttctgttccaccag-aactacttttgcaatcatggagaagttccat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95270413 127 + 121039945 TGGCTCCTGCTGACCGGGGAGGACGCACCCCAGAAGCTA---------------GTGTTCAAAGCCCTGCCATGTGGGCTTAGTAAAGCCATGCCCtttctgttctaccac-aactacttttgcaaccatggagaagttctat
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50412533 127 -  58131712 TGACTCTTGCTGACCCAGGAGGACGCACCCCAGAAGCCG---------------GCATTCAAAGCCCTGCCATGTGGGCTTAGTGAAGCCATGCCCTTTCTGTTCTACCAG-AACTACTTTCACAAGCATGGAGAAGTTCCAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       351972 127 -   1458659 TGACTCCTGCTGACTGGGGAGGACGTACCCCAGAAGCTG---------------GCGTTCAAAGCCCTGCCATGCGGGCTTAGTAAAGCCATGCCCTTTCTgttccaccag-aactacttctgcaaccatggagaagttccat
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3794029 127 -   4111199 TGACTCCTGCTGACTGGGGAGGACGCACCCCAGAAGCTG---------------GCGTTCAAAGCCCTGCCATGTGGGCTTAGTAAAGCCATGCCCTTTCTgttccaccag-aactacttctgcaaccatggagaagtcccat
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1       982254 123 +   3745603 TGGCTC---CTGACCGGGAAGGATGCCCCCCAGAAGCTG---------------GCATTCAAAACCCTGCCACGTGGGCTTAGTAAACGCACGCCCTTTCTGTTCCAGCAG-AACTACCTGTGTAGCCAT-GAGAGGTTCCAG
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr30              38472820  68 +  40214260 --------------------------------------------------------------------------TGATCTTGGCCACGCCGTGCCCTTTCTGTTCCCCCGt-aactacttctgtgaccgtggagaaatgctgt
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             832638 141 +   1040364 TGGCTCCTGCTGACCCAGGAGCGCACACCCCAAAGTCCAGCCTGTGAGCCCTGCGCATCCACCATCGTGCTGTGTGGGCACC-TCTAGCCACACCCTTT-Tgtttcatcagtgacaacttttgtgaccgtggagaagttctgt
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  67703580   0 - 124595110 C
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       180818 390 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             391165 688 -   3282555 M

a score=203355.000000
s hg38.chr15_KI270850v1_alt     99973 108 +    430880 cccatctctgggcctcaacttccacctttgccaaatgggggccctg-ctctgcT--------GTGG----ACAAGGG----------------------------------------GCAGGAGTTTGGGAAGCCAAGCTGAGGCCTCCACTTGCTGGGGT-
s panTro5.chr15              17337172 108 -  83230942 cccttgtctgggcctcaacttccacctttgccaaatgggggccctg-ctctgcT--------GTGG----ACAAGGG----------------------------------------GCAGGAGTTTGGGAAGCCAAGCTGAGGCCTTCACTTGCTGGGGT-
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        23148 108 -    378907 cccatgtctgggcctcaacttccacctttgccaaacgggggCCCTG-CTCTGCT--------GTGG----ACAAGGG----------------------------------------GCAGGAGTTTGGGAAGCCAAGCTGAGGCCTTCACTTGCTGGGGT-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95270540 154 + 121039945 cccatgtctgggcctcaacttccacc--tgcagagtggggCCCTTACCTCTGCCTGAGTGAAGTTC----ACCAGGGCCTCCCCTGCACTGTCCTGCTGGGCATGTAACAGTCTTGTGCAGGAGTTTGGGGACCCAAGCCGTAGCATTCACTTGCT-GGGT-
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50412660 104 -  58131712 CCCATGTCTGGGCCCTGGGTTC-----CTGCCAAACGGGGGCCCTG-CTCTGCT--------GTGGC---ACAAGGG----------------------------------------GCAGGAGTTTGGGGAGCCAAGCCGTGGCCTTCACTTGCTGGGGT-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       352099 108 -   1458659 cccatctctgggcctcaacttccacctctgccaaatgggggccctg-ctctgct--------gtggc---acaa-gg----------------------------------------GCAGGAGTTTGGGGAGCCAAGCCGTGGCCTTCACGTGCTGGGGT-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3794156 108 -   4111199 tccatgtctgggcctcaacttccacctctgccaaatgggggccctg-ctctgct--------gtggc---acaa-gg----------------------------------------GCAGGAGTTTGGGGAGCCAAGCCGTGGCCTTCACGTGCTGGGGT-
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1       982377 108 +   3745603 CCCACGTCTGGGCCTCCACTTCCAGCCCTGCCGAATGGGGGCCCTG-CTCTGCT--------GTGGC---ACAAGGG----------------------------------------GCGGGAGTTTGGGGAGCCAGGCCGTGGCCTTCACTTGCTGGGT--
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67703580  42 - 124595110 ---------------------------------------------------------------------------------------------------------------------CCTATATATAGGGAAGCTTCGTTGTGATCTTTATTTGCTGTG---
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38472888 112 +  40214260 gaccgggctgggcctcagctttggcttctgctgagtgacggCGCCA-CCATTCT--------GGGGCGATGTGAGGG----------------------------------------GCAGGGGCTCGGGAAGCCAAGCTGTGGCCCTCCCTTGCTGTGGG-
i canFam3.chr30             C 0 I 1
s dasNov3.JH572216             832779  81 +   1040364 cacctccctgggcctcagcttctac----------------------ctctgct--------gagg--------ggg----------------------------------------GACAGAGT---GGGAACTAAGCTGTGGCCTTTCCTTGCTGGGGGT
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       180818 390 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             391165 688 -   3282555 M

a score=309600.000000
s hg38.chr15_KI270850v1_alt    100081 91 +    430880 GAAGGTGGGAAGCTTAACGG--TCCC-ACCCTGACGCCAGCCCTTAAGGGCTTGTAAGTGATTCTTTCAGGTGTTCTGGTCCTAAGCCACAGGA
s panTro5.chr15              17337280 91 -  83230942 GAAGGTGGGAAGCTTAACGG--TCCC-ACCCTGACGCCAGCCCTTAAGGGCTTGTAAGTGATTGTTTCAGGTGTTCTGGTCCTAAGCCACAGGA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        23256 89 -    378907 GAAGGTGGGAAGCTTAACGG--TCCC-ACCCTGATGCCAGCCCTTAAGGGCTTGT--GTGATTCTTTCAGGTGTTCTGGTCCTAAGCCACAGGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95270694 92 + 121039945 GAAGGTGGGAAACTTAACAGC-TTCT-GCCCTGATGCCTGCCCTTAAAGGCTTGTAAGTGATTCTGTCAGGTGTTCTGGTCCTGAGCCACAGAA
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50412764 92 -  58131712 GAAGGTGGGAAGCTTATTGG--CTCCTGCCCTGACACCTGCCCTTACAGGCTTGTAAGTGATTCTGTCGGGAGTTCTGGTCCTGAGCCACAGGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       352207 91 -   1458659 GAAGGTGGGAAGCTTAATGG--TTCC-ACCCTGACGTCTGCCCTTAAGGGCTTGTAAGTGATTCTGTCAGGTGTTCTGGTCCTAAGCCACAGGA
i manLeu1.NW_012105520v1    C 0 M 733
s colAng1.NW_012116021v1      3794264 87 -   4111199 GAAGGTGGGAAGCTTAATGG--TCCC-ACCCTGACATCTGCCCTTAAAGGCTT----GTGATTCTGTCAGGTGTTCTGGTCCTAAGCCACAGGA
i colAng1.NW_012116021v1    C 0 C 0
s cebCap1.NW_016107979v1       181208 92 -   1024465 GAAGGTGGGGAGCTTAACAGC-TCCC-GCCCTGACGCCTGCCCTTAAGGGCTTGTAAGTGATTCTGGCAGGTGTTCTGGTCCTGAGCCGCAGGA
i cebCap1.NW_016107979v1    I 390 C 0
s aotNan1.NW_018511953v1       982485 92 +   3745603 GAAGGTGGGAAGCTTAACGGC-TCCC-ACCCTGACGCCTGCCCTTAAGGGCTTGTAAGTGATTCTGGCAGGTGTTCTGGTCCTGAGCCGCAGGA
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67703622 81 - 124595110 ----------ACCCTCGAGC--TCCC-AACCTGCAGCCCACAATACAGGACTTATAATACATTTCTTTAGGTATTTTGGGCCTGAGACATGAGG
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38473001 91 +  40214260 GGAAGCGGGGAGCTTAACCACGCTCC-ACCTGGA--TCCGCCCTTTAGGGCCTGAAAGAACTTTCTTCAGGAGGTCTGGTCCGGAGCCACAGAA
i canFam3.chr30             I 1 I 24
s dasNov3.JH572216             832860 91 +   1040364 GGGAGCGAGGAGCTTAAGTGC-TGCC-CACCCGGAGCCCACCGTCGAGGGC-TGCAATAACTTTCTGCGGGAGTTCTGGTCCTGAGCTGGAGAA
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             391165 688 -   3282555 M

a score=49501.000000
s hg38.chr15_KI270850v1_alt    100172 26 +    430880 ------------------------GAAG----------GAACAG-------CAGAGCCACCCATGGC
s panTro5.chr15              17337371 26 -  83230942 ------------------------GAAG----------GAACAG-------CAGAGCCACCCATGGC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        23345 26 -    378907 ------------------------GAAG----------GAACAG-------CAGAGCCACCCATGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95270786 21 + 121039945 ------------------------GAAG----------GAAC------------AGCCACCCGTGGC
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50412856 26 -  58131712 ------------------------GAAG----------GAACAG-------CAGAGCCACCTGTGGC
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1      3794351 26 -   4111199 ------------------------AGAG----------GAACAG-------CAGAGCCACCCGTGGC
i colAng1.NW_012116021v1    C 0 C 0
s cebCap1.NW_016107979v1       181300 26 -   1024465 ------------------------GAAG----------AAACAG-------CAGAGCCACGCGTGGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       982577 26 +   3745603 ------------------------GAAG----------AAACAG-------CAGAGCCACGCGTGGC
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67703703 43 - 124595110 ------------------------GAAAACCTTTCTGTGAACAGGTGGGTCCAAGGACAGGCAAGGT
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38473116 26 +  40214260 ------------------------CAGG----------GAAGGG-------CAGGGCCAAGGATGGC
i canFam3.chr30             I 24 C 0
s dasNov3.JH572216             832951 50 +   1040364 AAAGTGTCCTGCTGTGGATGAGTCTAGG----------AAAGAG-------GAGGGTCCAGCACAGC
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012105520v1       352298 733 -   1458659 M
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             391165 688 -   3282555 M

a score=1865237.000000
s hg38.chr15_KI270850v1_alt    100198 505 +    430880 TGCTCAGAAGTCTGCCTACCGTACTTGCAAATGTCCAAT-AACAAAACCTCCCACCTGTGTTCTA-TTTCAgcacaatctcacatctctccttccaacaactgcgtgaggcacacagtagtgtcctcattttgcagaggaggaaactgaggctca------gagtgggggagATCTGTGCCGGGAAGTAGGGGACATTGGCCTCTTTCTCAAAGCAGACATGGGG----GGTGGTCCCAGGAATATGCTCACCTGCAGGCCTGAGTTTGTA-TGAGG-TCGGGGGTTGGCCATTGACAGGCAGGATGGTGACAGTGAAGGCCACAGGATGGCTCTGGCGGTCCATCTCAGAGGCATTAGCCATCAGGACAAAA----CCGTCAGTGTCTTGCTCCCATCGTGCAGGTACTGGATCAGATGCTCTTCCACCTAGGGGCAGGCCCAGGGCTGGCAGTCAGGCCCCAG-----------------------------------CAGTACCCTTCATGTTCTGCCTTTGGGTGCAGGAAGAGactgacccttttagggcctc
s panTro5.chr15              17337397 504 -  83230942 TGCTCAGAAGTCTGCCTACCGTACTTGCAAATGTCCAAT-AACAAAACCTCCCACCTGTGTTCTA-TTTCGgcacaatctcacatctctccttccaacaactgcgtgaggcacacagtagtgtcctcattttgcagaggaggaaactgaggctca------gagagggggagATCTGTGCCGGGAAGTAGGGGACATTGGCCTCTTTCTCAAAGCAGACATGGGG----G-TGGTCCCAGGAATATGCTCACCTGCAGGCCTGAGTTTGTA-TGAGG-TTGGGGGTTGGCCATTGACAGGCAGGATGGTGACAGTGAAGGCCACAGGATGGCTCTGGTGGTCCATCTCAGAGGCATTAGCCATCAGGACAAAA----CCGTCAGTGTCTTGCTCCCATCGTGCAGGTACTGGATCAGATGCTCTTCCACCTAGGGGCAGGCCCAGGGCTGGCAGTCAGGCCCCAG-----------------------------------CAGCACCCTTCATGTTCtgcctttgggtgcaggaagagactgacccttttagggcctc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        23371 505 -    378907 TGCTCAGAAGTCTGCCTACCGTACTTGCAAATGTCCAAT-AACAAAACCTCCCACCTGTGTTCTA-TTTCAgcacaatctcacatctctccttccaacaactgcgtgaggcacacagtagtgtcctcattttgcagaggaggaaactgaggctca------gagagggggagATCTGTGCCGGGAAGTAGGGGACATTGGCCACTTTCTCAAAGCAGACATGGGG----CGTGGTCCCAGGAATATGCTCACCTGCAGGCCTGAGTTTGTA-TGAGG-TCGGGGGTTGGCCATTGACAGGCAGGATGGTGACAGTGAAGGCCACAGGATGGCTCTGGCGGTCCATCTCAGAGGCATTAGCCATCAGGACAAAA----CCGTCAGTGTCTTGCTCCCATCGTGCAGGTACTGGATCAGATGCTCTTCCACCTAGGGGCAGGCCCAGGGCTGGCAGTCAGGCCCCAG-----------------------------------CAGCACCCTTCATGTTCTGCCTTTGGGTGCAGGAAGAGactgacccttttagggcctc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95270807 512 + 121039945 CGCTCAGAAGTCTGCCTACCATACTTGGAAACGTCCAATAAAAAAAACCTCCCACCTGTGTTCTA-TTTCAgcacaatctcacatctctccttccaacaaccccgtgaggcatgtggcagtgtccccattttgcagaggaggaaactgaggatca------gagagggggagCTCTGTGCTGGGAACTAGGGGACGCTGGCCTCTTTCTCGAAGCAGACATGGGG----GGTGGTCCCAGGGATGCTCTCACCTGCAGGCCTGTGTTTGTAGTGAGGATGGGGGGTTGGTCATTGACAGGCAGGACAGTAACAGTGAAGGCCACAGGATGGCTCTGGCGGTCCATCTCGGAGGCGTTAGCCATCAGGACAAAACTGTCTGTCAGTGTCTCACTCCCGTCATGCATGTAGCGGATCAGCTGCTCTTCCACCTAGAGGCAGGCCCAGGGCTGGCAGTCAGGCCCCAG-----------------------------------CAGCACCCTTCGTGTCCTGCCTTTGGGTGCAGGAGGAGactgactcttttagggcttc
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50412882 507 -  58131712 TGCTCAGAAGTCTGCCTACCTTACTTGCAAGTGTCC-at-aacaaaacctcccacctgtgttcca-tttcagcacaatctcacaactctccttccaacaaccccatgaggcatgcggcagcgtccccattttgcataggaggaaactgaggctca------gacagggggagCTCTGTGCTGGGAAGTAGGGGATGCTGGCCTCTTTCTTGAAGCAGACATGGGG----GATGGTGCCAGGAATACTCTCACCTGCAGGCCTGTGTTTGTAGTGAGGACGGGGGGTTGGTCATTGACACGCAGGACGGTGACAGTGAAGGCCACAGTATGGCTCTGGCAGCCCATCTCGGAGGTGTCAGTCATCAGGACAAAACTGTCTGTCAGTGTCTCGCTCCCGTCGTGCACGTAGCGGATCAGCTGCTCTTCCACCTATGGGCAGGCCCAGGGCT---AGTCAGGCCCCAG-----------------------------------CAGCACCCTTCATGTCCTGCCTTTGGGTGCAGGAGGAGactgactcttttagggcttc
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1      3794377 479 -   4111199 TGCTCAGAAGTCTGCCTACAGTA-TTGCAAACGTCCAAT-AACAAAACCTCCCACCAGTGTTCTA-TTTCAGCACAATCTCACATCTCTCCTTCCAACTG---CATGAGG-------------ccccattttgcagacgaggatactgaggctca------gagagggggagATCTGTGGCAGGAAGTAGGGGACACTGGCCTCTTTCTCAAAGCAGACATGGGG------TGATCCCAGGAATAAGCTCACCTGCAGGCCTGAGTTTGTGGTGAGGTTGGGGGGTTGGCCATTGACAGGCAGGATGGTGACAGTGAAGGCCACAGGATGGCTCTGGCGGTCCATCTCCGAGACGTTAGCCATCAGGACAAAACTGTCTGTCAGTGTCTCGCTCCCCTCGTGCACACAGCAGATCAGCTGCTCTTCCACCGAGGGGCAGGCCCATGGCTGGCAGTCAGGACCCAG----------------------------------------------ATGCCCTGCTTTTGGGTGCATGAGGAGACTGA--ctttcagggcttc
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             391880 503 -   3282555 TGCCCAGGAGTCCGCCCGCCGTGCCCGCGAGCGCCCAGC-AGCAGAACCTCCCGCCC-CGTTCCG-TTTCGGCGCCGtctcacatcgctccttccagccactgcgtgaggcacgtggcagcgccccg--ttcgcagaggaggaaactgaggctca------gagaagGGGAGCTCTGCGCCGGGAGGGAGGCGACGCTGGCCTCTTTCTCGAAGCAGCCAT-GGG----GGTGGTCCCAGGGATGCTCTCACCTGCAGGCCAGTGTTTGTGGTGAGGACGGGGGGTTGGTCGTTGACAGGCCGGATGGTGACAGTGAAGGCCACAGGATGGCTCTGGCGGTCCATCTCGGAGGCGTTCGCCATCAGGACGAAACTGTCCGTCAGTGTTTCGCTCCCGTCGTGCACGTAGCGGACGAGCTGCTCTTCCACCTAGGGGCAGGCCCAGGGCTGGCGGTCAGGCCCCAG-----------------------------------CGGCA-CCTCCGTGTCCTGCCTTTGGg-g--gcaggagactgactctttcagggcccc
i saiBol1.JH378276          M 688 C 0
s cebCap1.NW_016107979v1       181326 505 -   1024465 CGCTCAGAAGTCAGCCTGCCGTACCTGCGAGCGTCCAAC-AGCAAAACCTCCCGCCT-TGCTCTG-TTTCAgcacaatctcacatctctccttccagccaccgcgtgaggcacacagcactgcccca--tttgcagaggaggaaactgaggctca------gagagggggagCTCTGTGCCAGG-GGGAGGGGACGCTGGCCTCTTTCTCGAAGCAGACAT-GGG----GGTGGTCCCAGGGATGCTCTCACCTGCAGGCCGGTGTTTGTGGTGAGGATGGGGGGTTGGTCGTTGACAGGCAGGACGGTGACAGTGAAGGCCACAGGATGGCTCTGGCGGTCCGACTCGGAGGCGTTCGCCATCAGGACAAAACCGTCTGTCAGTGTCTCGCTCCCGTCGTGCACGTAGCGGATGAGCTGCTCTTCCACCTAGGGGCAGGCCCAGGGCTGGCGGTCAGGCCCCAG-----------------------------------CAGCACCCTCCATGTCCTGCCTTTGGT-GCAGGAGGAGactgactctttcagggcctc
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       982603 509 +   3745603 CGCTCAGAAGTCTGCCTGCCGTACCTGCGAGCGTCCAAC-AGCAAAACCTCCCGCCTGTGTTCTG-tttcagcacaatctaatatctttccttccagccaccgcgtgaggcatgcggcagcgcccca--tttgcagaggaggaaactggggctca------gagagggggagCTCTGTGTCAGGAGGGAGGGGACGCTGGCCTCTTTCTCGAAGCAGACATGGGG----GGTGGTCCCAGGGATGCTCTCACCTGCAGGCCGGTGTTTGTGGTGAGGACCGGGGGTTGGTCGTTGACAGGCAGGACGGTGACAGTGAAGGCCACAGGATGGCTCTGGCGGTCCGTCTCGGAGGCGTTCGCCATCAGGACAAAACCGTCTGTCAGTGTCTCGCTCCCGTCGTGCACGTAGCGGATGAGCTGCTCTTCCACCTAGAGGCAGGCCCAGGGCTGGCGGTCAGGCCCCAG-----------------------------------CAGCACCCTCCGTGTCCTGCCTTTGGGTGCAGGAGGAGactgaccctttcggggcctc
i aotNan1.NW_018511953v1    C 0 I 89
s mm10.chr9                  67703746 496 - 124595110 -----CAAGGATGGTCTTTCTAAACCAAGACTGCCCAGT-AACAAAACCTCACAACTGCGTTTTGTTTTCAGCACTGTAtcacatctctccttccaa------------gtttgtggtagtgaacccatttcacagaggatgacactgag--cca------gagag----------------------aagggactCTAGTCTCTTTCTGGGACCAGAGATGGGA------TAGGTTCAGGAGTGAACTCACTTGCAGGCCTGTGTTTGTGGTGAGAACAGGGGGTTGGTCATTAACAGGAAGGATGGTGATCGTGAAGGCCACGGGCTGGCTCTGGCGGTCCATCTCTGAGGCATTAGCTAGCAGAACAAAGGCGTCTGTCTGTGTCTCACTTCCATCATGCACGTAGCGGATCAGCTGCTCTTCCACCTATGAGGAGACCCAGGATTGGTTGTCAGGCTTCAGCTAGCCCAAGACTCAACA----GGGATCTTGGGACCAGCACCCTTAACGTCCCATTGTTAGGTACAG---GAGACAGATCCCTTTAGAACAC-
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38473142 514 +  40214260 CATTCGCGAGACTGCCTGCCGCACTTCTAAGTGTTCAAC-AACCAAGTCTCACACCTGTGCCCTACTTTCAGTGC-------CATAGCTCTTCCCCACCAC--CTAGAGGCATGTGGCACGGTCCACACTT---AGAGAAAGCGAC--GGGCTCATGGGTGGGGGCGGGGAGCTCTGTGCTGGG----------------CCTCTCTTTGGGCG-GGAGGTGGGA----GGTGATCCCAGG-CTGCTCTCACCGTTAGGCCTGTGTTTGCGGTGAGGATGGGCGGTTGGTCATTGACGGGCAGGACGGTGATGGTGAAGGCCACAGGGTGGCTCTGGCGGTCCAGCTCGGAGGCGTTAGCCACTAGGGTGAAGCTGTCTGTCAGCGTCTCACTCCCGTCGTGCACATAGCGGATCTGCTGCTGTTCTACCTGTGGGCAGGCCCGAGGCTGAAGGCCAGGCCCTGG------CAGGCCTGAGGGCGGCGCGGGCTCCACCCCGGCACCCCTCGTGCTCTGCCTCTGGGTGTGGGAGG-GACGGGCTCCCTCCGCGCTTC
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             833001 502 +   1040364 CATTCACAAGGCTATCCACT-CACTTATAAGTGTCCAAC-AACAAAGCCTCACACAGCTATTCCACTTTCAGAGCACTGCCTCCTCTCTCCTCCTGCTAATGTGCTAAGGCATATGGCCGtgtccccactttacagaggaggaaattgaga---a------gaaaggGGGACTCTTCCGCTGGGAAGGGGGGGATCCTGG-CTCTCTCTCCGGG-----ATGGGGAGATGGTGTTTTCAGGGATGCGCTCACCTGTAGGCCTGTGTTCATGGAGAGGACGGGGGGCTGGTCGTTGACAGGCAGGACGGTGACGGTCAAGGTCACGGGCTGGCTCTGGCGGTCAATCTCCGAGGCATTGGCCAGGAGGACGAAGCCGTCTGTCAGCGTCTCGCTCCCGTCGTGCACGTAGCGGATCAGCTGCTGCTCCACCTACA-GCAGGCCGGTGGCCGGCGGGCAGGCCCCAG----------CAGGCACGCGGGTGGGTCTCAGGCCCAGCACcctccctgctctgcctttgggtgc----------------------------
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012105520v1       352298 733 -   1458659 M
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=21988.000000
s hg38.chr15_KI270850v1_alt    100703 11 +    430880 agcttccattg
s panTro5.chr15              17337901 11 -  83230942 agcttccattg
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        23876 11 -    378907 agtttccattg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95271319 11 + 121039945 attttccattg
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50413389 11 -  58131712 agcttccattg
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1      3794856 11 -   4111199 agcttccactg
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             392383 10 -   3282555 cgtttccact-
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       181831 11 -   1024465 cgtttccattg
i cebCap1.NW_016107979v1    C 0 I 127
s mm10.chr9                  67704242 10 - 124595110 -ATTTCCACAG
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38473656 11 +  40214260 CATTCCCGCAG
i canFam3.chr30             C 0 C 0
e aotNan1.NW_018511953v1       983112 89 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH572216             833503  0 +   1040364 C
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012105520v1       352298 733 -   1458659 M
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=38930.000000
s hg38.chr15_KI270850v1_alt    100714 15 +    430880 gtggaaaatggggac
s panTro5.chr15              17337912 15 -  83230942 gtggaaaatggggac
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        23887 15 -    378907 gtggaaaatggggac
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95271330 15 + 121039945 gtggaaaatggggac
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50413400 15 -  58131712 gtggaaaatggggac
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1      3794867 15 -   4111199 gtggaaaacggggat
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             392393 14 -   3282555 gtgg-aaatggggag
i saiBol1.JH378276          C 0 C 0
s mm10.chr9                  67704252 15 - 124595110 GTAAGAAGTGTGTAT
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38473667 14 +  40214260 GTGG-AGACGGGGAC
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             833503 13 +   1040364 --ggaaaatggggac
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1       983112 89 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       181842 127 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012105520v1       352298 733 -   1458659 M
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=56122.000000
s hg38.chr15_KI270850v1_alt    100729 39 +    430880 cataagttctggttcccagaggagttgtgaggaagaaag
s panTro5.chr15              17337927 39 -  83230942 cataagttctggttcccagaggagttgtgaggaagaaag
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        23902 39 -    378907 cataagttctggttcccagaggagttgtgaggaagaaag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95271345 37 + 121039945 cataagttctggctcc--gaggagttgtaaggaagaaag
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50413415 39 -  58131712 cataagttctggctcccagaggagctgtgaggaagaaag
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1      3794882 39 -   4111199 cataagttctggctcccagaagagttgtggggaagaaag
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             392407 39 -   3282555 aacgggctccagctcccggaggagttgtgcggaagaaag
i saiBol1.JH378276          C 0 I 14
s mm10.chr9                  67704267 26 - 124595110 Gtggagagatggctc-------agtggttaaga------
i mm10.chr9                 C 0 C 0
e aotNan1.NW_018511953v1       983112 89 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH572216             833516  0 +   1040364 C
e canFam3.chr30              38473681  0 +  40214260 C
e cebCap1.NW_016107979v1       181842 127 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012105520v1       352298 733 -   1458659 M
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=2367.000000
s hg38.chr15_KI270850v1_alt    100768 6 +    430880 gggata
s panTro5.chr15              17337966 6 -  83230942 gggata
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        23941 4 -    378907 ggga--
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26              50413454 6 -  58131712 gagata
i chlSab2.chr26             C 0 I 3952
s colAng1.NW_012116021v1      3794921 6 -   4111199 gagata
i colAng1.NW_012116021v1    C 0 I 9
e aotNan1.NW_018511953v1       983112 89 +   3745603 I
e mm10.chr9                  67704293 0 - 124595110 C
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH572216             833516 0 +   1040364 C
e canFam3.chr30              38473681 0 +  40214260 C
e cebCap1.NW_016107979v1       181842 127 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012105520v1       352298 733 -   1458659 M
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95271382 0 + 121039945 C
e saiBol1.JH378276             392446 14 -   3282555 I

a score=18595.000000
s hg38.chr15_KI270850v1_alt    100774 78 +    430880 ttttatttta-ttttgagacagagtctctcgctctg-ttgcccaggctggagtgcagtggtgtgatctcggctcactgca
s panTro5.chr15              17337972 78 -  83230942 ttttatttta-ttttgagacagagtctctcgctctg-ttgcccaggctggagtgcagtggtgtgatctcagcccactgca
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        23945 75 -    378907 ---tatttta-ttttgagacagagtctctcactctg-ttgcccaggctggagtgcagtggtgtgatctcggctcactgca
i gorGor5.CYUI01015946v1    C 0 C 0
s colAng1.NW_012116021v1      3794936 77 -   4111199 ttttattttatttttgagacagag--tctcactctg-ttgcccaggctggagtacagtggcgcgatttcggctcattgca
i colAng1.NW_012116021v1    I 9 C 0
s mm10.chr9                  67704293 43 - 124595110 ------------------------------gcactgactgctcttccagaggtcc-------tgagttcaattccctgca
i mm10.chr9                 C 0 C 0
s dasNov3.JH572216             833516  5 +   1040364 --------------------------------------------------agtgc-------------------------
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1       983112 89 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr30              38473681  0 +  40214260 C
e cebCap1.NW_016107979v1       181842 127 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012105520v1       352298 733 -   1458659 M
e chlSab2.chr26              50413460 3952 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95271382  0 + 121039945 C
e saiBol1.JH378276             392446 14 -   3282555 I

a score=5681.000000
s hg38.chr15_KI270850v1_alt    100852 5 +    430880 acctc
s panTro5.chr15              17338050 5 -  83230942 acctc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        24020 5 -    378907 acctc
i gorGor5.CYUI01015946v1    C 0 C 0
s colAng1.NW_012116021v1      3795013 5 -   4111199 acctc
i colAng1.NW_012116021v1    C 0 C 0
s mm10.chr9                  67704336 5 - 124595110 accac
i mm10.chr9                 C 0 I 223
s canFam3.chr30              38473681 5 +  40214260 ACCCC
i canFam3.chr30             C 0 C 0
e aotNan1.NW_018511953v1       983112 89 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH572216             833521 0 +   1040364 C
e cebCap1.NW_016107979v1       181842 127 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012105520v1       352298 733 -   1458659 M
e chlSab2.chr26              50413460 3952 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95271382 0 + 121039945 C
e saiBol1.JH378276             392446 14 -   3282555 I

a score=16275.000000
s hg38.chr15_KI270850v1_alt    100857 32 +    430880 tgcctcccagattcaagcgattctcctgcctc
s panTro5.chr15              17338055 32 -  83230942 tgcctcccagatgcaagcgattctcctgcctc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        24025 32 -    378907 tgcctcccagattcaagcgattctcctgcctc
i gorGor5.CYUI01015946v1    C 0 C 0
s colAng1.NW_012116021v1      3795018 32 -   4111199 tgtctcccaggttcaagcgattctcctgcctc
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr30              38473686 17 +  40214260 CTCCTCCCAGGCTGAAG---------------
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             833521 10 +   1040364 ----------------------ttcctgcctc
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1       983112 89 +   3745603 I
e mm10.chr9                  67704341 223 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       181842 127 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012105520v1       352298 733 -   1458659 M
e chlSab2.chr26              50413460 3952 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95271382  0 + 121039945 C
e saiBol1.JH378276             392446 14 -   3282555 I

a score=18569.000000
s hg38.chr15_KI270850v1_alt    100889 20 +    430880 agcctcctgagtagctggga
s panTro5.chr15              17338087 20 -  83230942 agcctcctgagtagctggga
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        24057 20 -    378907 agcctcctgaatagctggga
i gorGor5.CYUI01015946v1    C 0 C 0
s manLeu1.NW_012105520v1       353031 20 -   1458659 agcctcctgagtagctggga
i manLeu1.NW_012105520v1    M 733 C 0
s colAng1.NW_012116021v1      3795050 20 -   4111199 agcctcctgagtagctggga
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr30              38473703  2 +  40214260 ------------------GG
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             833531 15 +   1040364 -----ccagggtacttggga
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1       983112 89 +   3745603 I
e mm10.chr9                  67704341 223 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       181842 127 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50413460 3952 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95271382  0 + 121039945 C
e saiBol1.JH378276             392446 14 -   3282555 I

a score=98290.000000
s hg38.chr15_KI270850v1_alt    100909 138 +    430880 ctacaggtgcgggccaccacacccggctaattttttgtatttttagtagaaacagggtttcaccgtgttagccaggatggtcttgatctcctgacctcctgatctgcccacctcggcctcccaaagtcctggaattac
s panTro5.chr15              17338107 138 -  83230942 ctacaggtgcgggccaccacacccggctaattttttgtatttttagtagaaacagggtttcaccgtgttagccaggatggtcttgatctcctgacctcctgatctgcccaccttggtctcccaaagtcctggaattac
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        24077 138 -    378907 ctacaggtgcgggccaccacacccggctaattttttgtatttttagtagaaacagggtttcaccgtgttagccaggatggtcttgatctcctgacctcctgatctgcccaccttggcctcccaaagtcctggaattac
i gorGor5.CYUI01015946v1    C 0 C 0
s manLeu1.NW_012105520v1       353051 137 -   1458659 ctacaggcgcgtgccaccacaccctg-taattttttgtatttttagtagagacagggtttcatcatgatagccaggatggtcttgatctcctgacctcatgatccgcccacctcagcctcccaaagtgctgggattac
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3795070 137 -   4111199 ctacaggcacgtgccaccataccctg-taattttttgtatttttagtagagacagggtttcatcgtgatagcccagatggtcttgatttcctgacctcatgatccacccatctcagcctcccaaagtgctgggattac
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr30              38473705  44 +  40214260 CCGCAGG----------------------------------------AGGAACGGG-------------------AATGGGGCTGTCCTCC-----------------------GACTGCCCGGAG------------
i canFam3.chr30             C 0 C 0
e aotNan1.NW_018511953v1       983112  89 +   3745603 I
e mm10.chr9                  67704341 223 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH572216             833546   0 +   1040364 C
e cebCap1.NW_016107979v1       181842 127 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50413460 3952 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95271382   0 + 121039945 C
e saiBol1.JH378276             392446  14 -   3282555 I

a score=13429.000000
s hg38.chr15_KI270850v1_alt    101047 25 +    430880 aggcatgagccacagcgcccagccc
s panTro5.chr15              17338245 25 -  83230942 aggcatgagccacagcgcccagccc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        24215 25 -    378907 aggcatgagccacagcgcccagcct
i gorGor5.CYUI01015946v1    C 0 C 0
s manLeu1.NW_012105520v1       353188 25 -   1458659 aggcgtcagccaccgagcctagccT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3795207 25 -   4111199 aggcgtcagccactgagcctggcct
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr30              38473749 17 +  40214260 GGGAAGGAACGGCAGCA--------
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             833546 19 +   1040364 ggagatgagataaggcgct------
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1       983112 89 +   3745603 I
e mm10.chr9                  67704341 223 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       181842 127 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50413460 3952 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95271382  0 + 121039945 C
e saiBol1.JH378276             392446 14 -   3282555 I

a score=15308.000000
s hg38.chr15_KI270850v1_alt    101072 14 +    430880 gagatacagcatct
s panTro5.chr15              17338270 14 -  83230942 gagatacagcatct
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        24240 14 -    378907 gagatacagcatct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95271382 14 + 121039945 gagatacagtattt
i nomLeu3.chr6              C 0 C 0
s manLeu1.NW_012105520v1       353213 14 -   1458659 GAGATACAGTAGTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3795232 14 -   4111199 gagatacagtattg
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr30              38473766  7 +  40214260 -------GGCACCC
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             833565 10 +   1040364 ----tacagcTCCC
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1       983112 89 +   3745603 I
e mm10.chr9                  67704341 223 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       181842 127 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50413460 3952 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             392446 14 -   3282555 I

a score=22395.000000
s hg38.chr15_KI270850v1_alt    101086 13 +    430880 aaagcATAGGTCT
s panTro5.chr15              17338284 13 -  83230942 aaagcATAGGTCT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        24254 13 -    378907 aaagcATAGGTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95271396 13 + 121039945 aaagcATAGGTGC
i nomLeu3.chr6              C 0 C 0
s manLeu1.NW_012105520v1       353227 13 -   1458659 AAAGCATAGGTGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3795246 13 -   4111199 aaagcataggtgc
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             392460 13 -   3282555 aaagcAGAGGTGC
i saiBol1.JH378276          I 14 C 0
s canFam3.chr30              38473773 13 +  40214260 AGAGCAGAGGCCT
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             833575 10 +   1040364 TAAACATCAG---
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1       983112 89 +   3745603 I
e mm10.chr9                  67704341 223 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       181842 127 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50413460 3952 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=103023.000000
s hg38.chr15_KI270850v1_alt    101099 53 +    430880 TTCTGAAATGTGA-CTCCCTGTCTCCTCTC--TGTATAA-CCCCTGGACTGGGAGTC
s panTro5.chr15              17338297 53 -  83230942 TTCTGAAATGTGA-CTCCCTGTCTCCTCTC--TGTATAA-CCCCTGGACTGGGAGTC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        24267 53 -    378907 TTCTGAAATGTGA-CTCCCTGTCTCCTCTC--TGTATAA-CCCCTGGACTGGGAGTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95271409 55 + 121039945 TTCTGAAATGTGA-CTCCCCGTCTCCTCTCTGTGTATAA-CCCCCAGACTGGAAGTC
i nomLeu3.chr6              C 0 C 0
s manLeu1.NW_012105520v1       353240 56 -   1458659 TTCTGAAATGTGA-TTCCCTGTCTCTTCTCTGTGTATAACCCCCTGGACTGGGAGTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3795259 57 -   4111199 ttctgaaatgtgaCTCCCCTGTCTCCTCTCCGTGTATAATCCCCTGGACTGGGAGTC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             392473 49 -   3282555 TTCCGACATGCGG-CTCCC-GACTC--CTC--TGCGCAA-ACCCCAGA-TGGGGGTC
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       983201 51 +   3745603 TTCCGAAATGCGA-CTCCC-GACTCCTCTC--TGTGTAA-ACCCCGGA-TGGGAGTC
i aotNan1.NW_018511953v1    I 89 C 0
s canFam3.chr30              38473786 54 +  40214260 -CCCCGACCGCGACCTCCCTGCTTCCTCTG--GGTGGACGCCCCCAGCCGTAGAGCC
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             833585 40 +   1040364 --------------CTCCCCGCCTCCTCTC--TGCATGT-ACCCCAGACTGGGAGTC
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  67704341 223 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       181842 127 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50413460 3952 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=154045.000000
s hg38.chr15_KI270850v1_alt    101152 61 +    430880 CCCGGGGCTCCCTCCACTCTGCCCCCAGAGCTGGGCTGCAGCCCCTGGGCCTCTCTCACAG
s panTro5.chr15              17338350 61 -  83230942 CCCGGGGCTCCCTCCACTCTGCCCCCAGAGCTGGGCTGCAGCCCCTGGGCCTCTCTCACAG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        24320 61 -    378907 CCCGGGGCTCCCTCCACTCTGCCCCCAGAGCTGGGCTGCAGCCCCTGGGCCTCTCTCACAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95271464 61 + 121039945 CCCAGGGCTCCCTCCACTCTGCCCCCAGAGCTGGACTGCAGCCCCTGGGCCTCTCTCACAG
i nomLeu3.chr6              C 0 C 0
s manLeu1.NW_012105520v1       353296 61 -   1458659 CCTGGAGCTCCCTCCACTCTGCCCCCAGAGCTGGGCTGCAGCCCCTGGGCCTCTCTCACAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3795316 61 -   4111199 CCTGGAGCTCCCTCCACTCTGCCCCCAGAGCTGGGCTGCAGCCCCTGGGCCTCTCTCACAG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             392522 55 -   3282555 -CCGGGGCTCCCGTCACC-GGCGCCCGGAGCTGG-CTGCAG-CCCTGGGC--CTGTCACAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       181969 55 -   1024465 CCCGGGGCTCCCTTCACT--GCGCCCAGAGCTGG-CTGCAG-CCCTGGGC--CTCTCACAG
i cebCap1.NW_016107979v1    I 127 C 0
s aotNan1.NW_018511953v1       983252 57 +   3745603 -CCGGGGCGCCCTTCACT-TGTGCCCGGAGCTGG-CTGCAG-CCCTGGGCCTCTCTCACAG
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr30              38473840 36 +  40214260 CCCAG-----CTGCCCCCCGGCCCCCAGCG---------AGTCCCGAGAG-----------
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             833625 58 +   1040364 CTTGGGGCTCCC-CTACCCTGGCCCCG--GCTGGGCCGCACCCCCGGGGCCTCCCTGCTGG
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  67704341 223 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50413460 3952 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=772346.000000
s hg38.chr15_KI270850v1_alt    101213 170 +    430880 CCGTACCTCTCTCCAGCAGAAGGTGCTGAGGGTCCTGGCTTGAGGCCCATCCTCCTTCTGCAGGGCCCCATGCCGGGGTGGCTCCAGCACCTGCAGGCCAAGGCCCGGGAGAGTGGGGAAGCAGGACCTGGCAACGCGGAGCAGTGGAGGGGCCAGGGTGCAGCTGCGAC
s panTro5.chr15              17338411 170 -  83230942 CCGTACCTCTCTCCAGCAGAAGGTGCTGAGGGTCCTGGCTTGAGGCCCATCCTCCTTCTGCAGGGCCCCATGCCGGGGTGGCTCCAGCACCTGCAGGCCAAGGCCCGGGAGAGTGGGGAAGTAGGACCTGGCAACGCGGAGCAGTGGAGGGGCCAGGGTGCAGCTGCCAC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        24381 170 -    378907 CCGTACCTCTCTCCAGCAGAAGGTGCTGAGGGTCCTGGCTTGAGGCCCATCCTCCTTCTGCAGGGCCCCATGCCGGGGTGGCTCCAGCACCTGCAGGCCAAGGCCCGGGAGAGTGGGGAAATAGGACCTGGCAACGCGGAGCAGTGGAGGGGCCAGGGTGCAGCTGCCAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95271525 169 + 121039945 CCATACCTCTCTCCAGGAGAAGGCGCTGAGGGTCTTGGCTTGAGGTCCATCCTCCTTCTGCAGGGCTCCATGCTGGGGTGGCTCCAGCACCTGCAGGCTGAGGCCCGGGAGAGTGGGGAAGTAGGGCCCGGTGACGCGGAGCAGTGGAGGGGCCAGGGTGAGGCTGCCA-
i nomLeu3.chr6              C 0 C 0
s manLeu1.NW_012105520v1       353357 170 -   1458659 CCATACCTCTCTCCAGCAGAAGGCGCTGAGGGTCTTGGCATGAGGCCCATCTTCCTTCTGCAGGGCCCCATGCCAGGATGGCTCCAGAACCTGCAGGCCAAGGCCCGGGAGAGTGGGGAAGTAGGGCCCGGTGACGCAGCGCAGTGGAGGGACCAAGGTGTGGCTGCCAC
i manLeu1.NW_012105520v1    C 0 I 10
s colAng1.NW_012116021v1      3795377 170 -   4111199 CCATACCTCTCTCCAGCAGAAGGCGCTGAGGGTCTTGGCATGAGGCCCATCTTCCTTCTGCAGGGCCCCATGCCAGGATGGCTCCAGAACCTACAGGCCAAGGCCTGGGAGAGTGGAGAAGTAGGGCCCAGTGATGCGGAGCAGTGGAGGGACCAAGGTGTGGCTGCCAC
i colAng1.NW_012116021v1    C 0 I 10
s saiBol1.JH378276             392577 167 -   3282555 CCGTACCTCTCTCCAGGAGAAGGCGCGGAGGGTCCCGGCTTGAGGTCCGTCCTCCTTCTGCAGGGCCCCGTGCTGGGGCGGCTCCAGCACCTGCAGGCTAAGACCAGGCAGAGTGGGGAAGTAGGGCCCGGTGACGCGGAGCAGCGCAGGGGTCAGCGTGCGGCTGC---
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       182024 167 -   1024465 CCGTACCTCTCTCCAGGAGAAGGCGCTGAGGGTCCTGGCTTGAGACCCGTCCTCCTTCTTCAGGGCCCCGTGCCGGGGCGGCTCCAGCACCTGCAGGCTAATGCCAGGCAGAGTGGGGAAGTAGGGCCCGGCGACGCGGAGCAGCGGAGGGGCCAGCGTGCGGCTGC---
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       983309 167 +   3745603 CCGTACCTCTCTCCAGGAGAAGGCGCTGAGGGTCCCGGCTTGAGGTCCGTCCTCCTTCTGCAGGACCCCGTGCCGGGGCGGCGCCAGCACCTGCAGGCTAAGGCCAGGCAGAGTTGGGAAGTAGGGCCCGGCGACGCGGAGCAGCGGAGGGGCCAGCGTGCGGCTGC---
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67704564 167 - 124595110 CGGTACCTCTCTCCAGGAGAAGGTGCTGAGGCTCCCATCTTGAGAATGATCCTCCTTCTGCAGGGCCCCGTGCTGCGGTGGCTCTAGCACCTGCAGGACAAGGCCTGGCAGCGTGGGGAAGTAAGGCCCAGTGATCTGGACCAGAGGAGGGGCCAGCGTCCGGGTGC---
i mm10.chr9                 I 223 C 0
s canFam3.chr30              38473876 167 +  40214260 CAGTACCTCTTTCCAGGAGAAAGCGCTGAGGGTCCCCGCTTGAGGGGCCTCCTCTCTCCGCAGGGCCCCGTGCAGGGGCTGCTCGAGGACCCGCAGTTCGAGGCCGGGCAGTGCAGGGAAGTAGGGCCCGGCGACCTGGAGCAGCGGGGGGGCCAGCACGCGGCTGC---
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             833683 167 +   1040364 CCCTACCTCTCTCCAGGAGAAGCCCTCCAGGCTCCCGTCTTGAGGTCCTTCCTCTCTGCGCAGGGTGCCGTGCCGGGGCGGCTGCAGCACCTGCAGGCGGAGGCCTGCCAGCGTGGGGAAGTAGGGGCCGGCGACGCGGAGCAGCGGAGGGGCCAGGGTGCGGACGC---
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50413460 3952 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=20848.000000
s hg38.chr15_KI270850v1_alt    101383 15 +    430880 TGTGCCCCCTCTACT
s panTro5.chr15              17338581 15 -  83230942 TGTGCCCCCTCTACT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        24551 15 -    378907 TGTGCCCCCTCTACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95271694 11 + 121039945 ----CCCTCAGGGAC
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378276             392744 13 -   3282555 --CGCCCTCGGGGAC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       182191 13 -   1024465 --CGCCCTCAGGGAC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       983476 13 +   3745603 --CGCCCTCGGGGAC
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67704731 13 - 124595110 --CGCCCTCGGGAAC
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38474043 13 +  40214260 --CGCCCTCGGGGAC
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             833850 13 +   1040364 --CGCCCTCGGCGAC
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3795547 10 -   4111199 I
e manLeu1.NW_012105520v1       353527 10 -   1458659 I
e chlSab2.chr26              50413460 3952 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=1743838.000000
s hg38.chr15_KI270850v1_alt    101398 393 +    430880 GCTGAAGTTTTGTGCCCCCAGTGGGGATGACAGCAGGCAGCACCTCCAGCTCCAC-GTGACGTCCTCAAGGGGAGCACCCAGGCC-GAGGCCACATCCAGCGAGAAGGCATG--------CCTCAGGGCGGGAGTGCAGGTAGAGGATCCTGCCTGTGTCCACTGCCTCTTGGGAGAAGCTCTGCACGGGGTCCAGGCTGGGTGGCTCATCTGCCAAGATGCCACGCAGCACCATCACCAGGTAGCCGGCACTCGGTGGGCTCTTCACTGAGAAAACGATGTCTGCTGGCGGCACTGCCTCCTGGGCTACCTGGTTAACAGAGGTCATGAGGACTCACAAGGGAATGCAGA-GGGGTCTCAGAGGG-GCCCACTG--TGGCCCTAAGCAGCCAGAACAGCCTTGATC--
s panTro5.chr15              17338596 401 -  83230942 GCTGAAGTTTTGTGCCCCCAGTGGGGATGACAGCAGGCAGCACCTCCAGCTCCAC-GTGACGTCCTCAAGGGGAGCACCCAGGCC-GAGGCCACATCCAGCGAGAAGGCATGGCTTCAGGCCTCAGAGCGGGAGTGCAGGTAGAGGATCCTGCCTGTGTCCACTGCCTCTTGGGAGAAGCTCTGCACGGGGTCCAGGCTGGGTGGCTCATCTGCCAAGATGCCACGCAGCACCATCACCAGGTAGCCGGCACTCAGTGGGCTCTTCACTGAGAAAACGATGTCTGCTGGCGGCACTGCCTCTTGGGCTACCTGGTTAACAGAGGTCATGAGGACTCACAAGGGAATGCAGA-GGAGTCTCAGAGGG-GCCCACTG--TGGCCCTAAGCAGCCAGAACAGCCTTGATC--
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        24566 401 -    378907 GCTGAAGTTTTGTGCCCCCAGTGGGGATGACAGCAGGCAGCACCTCCAGCTTCAC-GTGACGTCCTCAAGGGGAGCACCCAGGCT-GAGGCCACATCCAGCGAGAAGGCATGGCTCCAGGCCTCAGGGCGGGAGTACAGGTAGAGGATCCTGCCTGTGTCCACTGCCTCTGGGGAGAAGCTCTGCATGGGGTCCAGGCTGGGTGGCTCATCTGCCAAGATGCCACGCAGCACCATCACCAGGTAGCCGGCACTCGGTGGGCTCTTCACTGAGAAAACGATGTCTGCTGGCGGCACTGCCTCCTGGGCTACCTGGTTAACAGAGGTCATGAGGACTCACAAGGGAATGCAGA-GGAGTCTCAGAGGG-GCCCACTG--TGGCCCTAAGCAGCCGGAACAGCCTTGATC--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95271705 403 + 121039945 GCTGAAGTTTTGCGCCTCCAGT-GGGATGGCAGCGGGCAGCACCTCCAGCTCCACAAGGACGCCCTCGAGGGGAGCACCCAGGCCTGAGGCCACATCCAGCGAGAAGGCATCACTCCAGGCCTCAGGGCGGGAGTGTAGGTACAGGACCCTGCCTGTGTCCACTGCCTCCTGGGAGAAGCTCTGCACGGGGTCCAGGCTGGGTGGCTCATCTGCCAAGGCACCACGCGACACCATCACCAGGTAGCCGGCACTCGGTGGGCTCTTCACTGAGAATACAATGTCTGCCGGCGGCACTGCCTCCTGGGCTGCCTGGTTAACAGAGGTCATGAGGACTCACAGGGGGCCACAGATGGGGTCTCAGAGGG-GTCCACTG--TGGCCCTAAGCAGCCAGAACAGGCTTGATC--
i nomLeu3.chr6              C 0 C 0
s manLeu1.NW_012105520v1       353537 398 -   1458659 GCTGAAGTTTTGCACTCCCGGTAGGGATGACAGTGGGCAGCACCTCCAGTTCTAC-GATACGTCCTCAAGGGGAGCACCCAGGCT-GAGGCCACATCCAGCAAGAAGGCATCGCTCCAGGCCT--GAGCAGGAGTGCAGGTACAGGATCCTGTCTGTGTCCACTGCCTCTTGAGAGAAGCTCTGCATGGGGTCCAGGCTGGGTGGCTCACCTGCCAAGACACCACGCGAAACCATCACCAGGTAGTTGGCACTCAGT-GGCTCTTCACTGAGAAAACGATGTctgccttctgggctgcctcctgggctgcctGGTTAACAGAGGTCATGAGGACTAACAAGGGAACACAGA-TGGGTCTCAGAGGG-GCCCACTG--TGCCCCTAGGCAGCCAGAACAGGCTTGATC--
i manLeu1.NW_012105520v1    I 10 C 0
s colAng1.NW_012116021v1      3795557 401 -   4111199 GCTGAAGTTTTGCACTCCCGGTGGGGATGACAGTGGGCAACACCTCCAGCTCTAC-GATACGTCATCAAGGGGAGCGCCCAGGCT-GAGGCCACAACCAGCGAGAAGGCATCGCTCCAGGCCTCAGGGCAGGAGTGCAGGTACAGGATCCTGCCTGCGTCCACCGCCTATTGAGAGAAGCTCTGCATGGGGTCCAGGCTGGGTGGCTCATCTGCCAAGGCGCCAGGCGAAACCATCACCACTGAGCTGGCACTCAGTGGGCTCTTCACTGAGAAAACGATGTCTGCCTTCTGGGCTGCCGCCTGGGCTGCCTGGTTAACAGAGGTCATGAGGACTAACAAGGGAACACAGA-TGGGTCTCAGAGGG-GCCCACTG--TGGCCCTAGGCAGCCAGAACAGGCTCGATC--
i colAng1.NW_012116021v1    I 10 C 0
s saiBol1.JH378276             392757 403 -   3282555 GCTGAAGTTTTGCGCCTCCAGT-GGGATGGCAGCGGGCAGCACCTGCAGCTCCACACGGACACCCTCAAGGGGGGCGCCCAGGCCCGAGGCCACGTCCAGCGAGAAGGCGTCGCTCCAGGCCTCAGGGCGGGAGTGCAGGTACAGGACCCTGCCCGCGTCCACCGCCTCCTGGGAGAAGCTCTGCACGGGGTCCAGGCTGGGTGGCTCATCTGCCAAGGCGCCGTGCGACACCATCACCAGGTAGCCGGCACTCGGTGGGCTCTTCACTGAGAATGTGATGTCTGCGGGCGGCACTGCCTCCTGGGCTGCCTGGTTGACAGAGGTCATGAGGACTCACAGGGGGCCCCAGAGAGGGTCACAGAGCG-GGCCACTG--TGGCCCTAAGCAGCCAAAACAGGCTTGATC--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       182204 403 -   1024465 GCTGAAGTTTTGCACCTCCAGT-GGGATGGCAGCAGGCAGCACCTCCAGCTCCACACGGACACCCTCAAGGGGAGCACCCAGGCCTGAGTCCACATCCAGCGAGAAGGCATCGCTCCAGGCCTCAGGGCGGGAGTGCAGGTACAGGACCCTGCCCGCATCCACCGCCTCCTGGGAGAAGCTCTGCACAGGGTCCAGGCTGGGTGGCTCATCTGCCAAGGCACCATGCGACACCATCACCAGGTAGCCGGCACTCGGTGGGCTCTTCACTGAGAATGTGATGTCTGCTGGCGGCACTGCCTCCTGGGCTGCCTGGTTAATAGAGGTCATGAGGACTCACAGGGGGCCACAGAGAGAGTCACAGAGGG-GGCCACTG--TGGCCCTAAGCAGCCAAAACAGGCTTGATC--
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       983489 403 +   3745603 GCTGAAGTTTTGCGCCTCCAGT-GGGATGGCAGCAGGCAGCACCTCCAGCTCCACGCGGACGCCCTCAAGGGGAGCACCCAGGCCCGAGGCCACATCCAGCGAGAAGGCGTCGCTCCAGGCCTCAGGGCGGGAGTGCAGGTACAGGACCCTGCCCGCGTCCACCGCCTCCTGGGAGAAGTTTTGCACGGGATCCAGGCTGGGTGGCTCATCTGCCAAGGCTCCATGCGACACCATCACCAGGTAGCCGGCACTCGGTGGGCTCTTCACTGAGAATGTGATGTCTGCGGGCGGCACTGCCTCCTGGGCTGCCTGGTTAACAGAGGTCATGAGGACTCACAGGGGGCTACAGAGGGGGTCACAGAGGG-GGCCACTG--TGGCCCTAAGCAGCCAAAACAGGCTTGATC--
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67704744 384 - 124595110 GCTGAAGTTTTGAACATCCAGG-GGGATGACTGTGGGCAGCACCTCCAGCTCCACAGAGATGCCTTCAAGAGGATCACCCAGGCCCGAGGCCACATCCAGGGAGAAGGAATCACTCCAGGCTCCAGGGCGAGAGTGCAGGTAGAGAACCCGGCCTGAATTCACTGCCTCCTGGGAGAAGCTCTGCACAGGGTCCAGGCTGGGCGGCTCCTCTGCTGAAGCGCCGTGGGACACCATCACCAGGTAGCCGGCGTTCGGGGGGCTTCTCAACGAGAACATGATGTCGGCAGGCAGCACTGCCTCCTGGACCACCTAGTCAACAGAGACGATGGGGACAAAC--------------GGGGTCACAGG------CTGTTG--TGGACCTCAGGTGGCAGAACAGGCTCGGTC--
i mm10.chr9                 C 0 I 537
s canFam3.chr30              38474056 372 +  40214260 GCTGAAGTTCTGTGCCTCCAGT-GGGATGGTGGCGGGCAGCACCTCCAGCTCCACGCGGACGCCCTCGAGGGGCGCACCCAGGCCTGAGCCCACGTCTAGGGAGAAGGAGTCACTCCAGGCCTCGGGGCGGGAGTGGAGGTACAGGACCCTGCCGGCGTCCACCGCCTCCTGGGAGAAGCTCTGCACGGGGTCCCAGCTGGGCGGCCCGGCCACGGAGGCGCCGCGGGACAGCATCACCAGGTAGCCGGCCCGCGGCGGGGTCTTCACCGAGAACACAATTTGGGCGGGCGGCACTGCCTCCTGCGCTGCCTGCGTGACAC-------------------------------AGGGTCATGGAGGGAGGCCGCCG---GCCCCCAAGCGGCCAGAGCAGGCTCAGCG--
i canFam3.chr30             C 0 I 2
s dasNov3.JH572216             833863 390 +   1040364 ACTGAAGTTCTGAGCCTCCAGC-GGGACGGCGGCGGGCAGCACCTCCAGCTCCACCCGGATGCCCTCGAGGGGGGCGCCCAGGCCCGAGGCCACGTCCAGGGAGAAGGTGTCGCTCTGGGCCTCGGGGCGGGAGTGCAGGTACAGGACCCTGCCCGCGTCCACCGCCTCCTGGGAGAAGCTCTGCACGGGGTCCAGGCGGGGCGGCTCGTCCGCTGCGGCGCCGGGGGACACGGTCACCAGGTAGCCGGCGCTGGGTGGGGACTTCACTGAGAACACGATGTCTGCGGGTGGCACTGCTTCCTGGGCTGCCTGGTTGACAGAGGGTGCCGAGACTCAC--------------GGGG---CGGAACG-GGCTGTCTCCTCGCCCCCCACGCCCAGGAAGGGCCCAGGGCA
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50413460 3952 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=324118.000000
s hg38.chr15_KI270850v1_alt    101791 147 +    430880 TTGCTCCACTTATTTCCCCAGATACCACTGCTCATTTAGTGACACACACACA--TGTGGGTTCACACACACAGCAGCCAGACATGCAGCTGGTCACAttttttgtttttttgagacagggtctcactctgtcacccaggctggagtgct
s panTro5.chr15              17338997 149 -  83230942 TTGCTCCACTTATTTCCCCAGATACCACTGCTCATTTAGTGACACACACACACATGTGGGTTCACACACACAGCAGCCAGACATGCAGCTGGTCACAttttttgtttttttgagacagggtctcactctgtcacccaggctggagtgct
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        24967 147 -    378907 TTGCTCCACTTATTTCCCCAGATACCACTGCTCATTTAGTGACACACACACA--TGTGGGTTCACACACACAGCAGCCAGACATGCAGCTGGTCACAttttttgtttttttgagacagggtctcactctgtcacccaggctggagtgct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95272108 148 + 121039945 TTGCCCCACTTATTCCTCTAGGTGCCACTGCTCATTTAGACACACAAACACACACGTGGGTTCACACACACAGCAGCCAGACATGCAGCTGGTCACAttttttg-ttttttaagacagggtctcactgtgtcacccaggctggagtgca
i nomLeu3.chr6              C 0 C 0
s manLeu1.NW_012105520v1       353935 137 -   1458659 TTGCTCA----------CCAGATACCACTGCTCATTTAGTCACACAAACACACACGT-GGTTCACACACACAGCAGCCAGACATGCAGCTGTTCACAttttttg-ttttttaagacagggtctcactctgtcaccgaggctggagtgca
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3795958 134 -   4111199 TTGCTGA----------CCAGATACCACTGCTCATTTAGTCAC----ACACACACGTGGGTTCACACACACAGCAGCCAGATATGCAGCTGTTCACAttttctg-ttttttaagacagggtctcactctgtcacccaggctggagtgca
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             393160 146 -   3282555 TTGCCCCCCTGCTTCCCCCAGATACCGTTGCTCATTTAGACACCCAAACACACATGCGAGTTCACACACACAGCAGCCAGACATGCCGCTCGTCACGttttttg-ctgtttgagacagggtctca--ctgtcagccaggcgggagtgca
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       182607 146 -   1024465 TTGCCCCCCTCATTCTCCCAGATACCATTGCTCATTTAGACACACAAACACACATGTGAGCTCACACACACAGCAGCCAGACATGCAGCTGGTCACAttttttg-ttgtttgaggcagggtctca--ctgtcagccaggctggagtgca
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       983892 148 +   3745603 TTGCCCCCCTGATTCCCCCAGATACCACTGCTCATTTAGACACACAAACACACACGTAAGTTCACACACACAGCAGCCAGACATGCAGCTGGTCACAttttttg-ttgtttgagacagggtctcactctgtcagccaggctggagtgca
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr30              38474430  62 +  40214260 GTGCCCC----------CCAGCCCCC----------------------CGCCCAGGAGGGCC--------------CCGGACACCC---------------CTG-----------------CTCACTCAGACACCCAGAC---------
i canFam3.chr30             I 2 C 0
s dasNov3.JH572216             834253  41 +   1040364 -----------------TCGGACGCCACTGCTCACTGAGACGGGCAGACAC-------------------------CCAGGCC------------------------------------------------------------------
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  67705128 537 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50413460 3952 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=1353853.000000
s hg38.chr15_KI270850v1_alt    101938 531 +    430880 gtggtgtgatcacagc---tccctgcagcctcaacgtcctaggctcaaggg----------ctcagcctcccaagtagctggggaccacagtcatgtgccaccatgcctggctaattt-ttaaatgttttgtgtagagatggggtttcactgggttgcc-cca---gctggtcACATGTTAATACCCACCCCACACATGGTTACGGGGTGTCGGTCA-ACAGCTTGAGATGCACTCCCTCAGGGAGGTGCATAATCACATGTCCCCAGACTCAGTGACACAGACATATGAGTTCATCAGATGCTGACGCAG--TCACACAGGTACAGGTACACAT-GCGTGTGTG------------------------CACACGCACACAG-GCCC-CCTGCTCAGGATCTGTTCAGGCCTG---TGGCTGGTTTGCTGGCAGCATCCTCCCCAACCCCTGCTATTACCACCCAGGACCATCAGAGGGTGCCCTGCCCCACCCCACCCCACCCCTCCTAGAGGCACAGGCACCCCCAGCACAGGCCCTACAGAGCTCACACCCCAAAGGCCACATGGGCTCCCTCACCTGA
s panTro5.chr15              17339146 531 -  83230942 gtggtgtgatcacagc---tccctgcagcctcaacctcctaggctcaaggg----------ctcagcctcccaagtagctggg-accacagtcatgtgccaccatgcctggctaattt-ttaaattttttgtgtagagatggggtttcactgggttgcc-cca---gctggtcACATGTTAATACCCACCCCACACATGGTTACGGGGTGTCGGTCACACAGCTTGAGATGCACTCCCTCAGGGAAGTGCATAATCACATGTCCCCAGACTCAGTGACACAGACATATGAGTTCATCAGATGCTGACGCAG--TCACACAGGTACAGGTACACAT-GCGTGTGTG------------------------CGCACGCACACAG-GCCC-CCTGCTCAGGATCTGTTCAGGCCTG---TGGCTGGTTTGCTGGCAGCATCCTCCCCAACCCCTGCTATTACCACCCAGGACCATCAGCGGGTGCCCTGCCCCACCCCACCCCACCCCTCCTAGAGGCACAGGCACCCCCAGCACAGGCCCTACAGAGCTCACACCCCAAAGGCCACATGGGctccctcacctga
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        25114 533 -    378907 gtggtgtgatcacagc---tccctgcagcctcaacttcctaggctcaaggg----------ctcagcctcccaagtagctggg-accacagtcatgtgccaccatgcctggctaattt-ttaaattttttgtgtagagatggggtttcactgggttgcc-cca---gctggtcACATGTTAATACCCACCCCACACATGGTTACGGGGTGTCGGTCACACAGCTTGAGATGCACTCCCTCAGGGAAGTGCATAATCACATGTCCCCAGACTCAGTGACACAGACATATGAGTTCATCAGATGCTGACACAG--TCACACAGGTACAGGTACACAT-GCGTGTGTG----------------------CACACACGCACACAG-GCCC-CCTGCTCAGGATCTGTTCAGGCCTG---TGGCTGGTTTGCTGGCAGCATCCTCCCCAACCCCTGCTATTACCACCCAGGACCATCAGAGGGTGCCCTGCCCCACCCCACCCCACCCCTCCTAGAGGCACAGGCACCCCCAGCACAGGCCCTACAGAGCTCACACCCCAAAGGCCACATGGGctccctcacctga
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95272256 528 + 121039945 gtggtgcgatcacagt---tccctgaagcctcaacttcccaggctcaagggatcctcccacctcagcctcccaagtagctgtg-atcacaggcatgtgccaccatgcccggctaattt-ttaaattttttgtgtagagatggggtttcactgggttgcc-ccggctgCTGGTCACATGTTAATACCCACCCCACACACGGTTGCAGGGGGTCAGTC--ACAGCTTGAGATGCACTCCCTCGGGGAGGTGCGTAATCACATATCCCCAGACTCAGTGACACAGACACATGAGTTCATCATATGCTGACGCAG--TCAC------ACATGTACACAT-GCGCGTGTG--------------------CACACGCACACACACAG-GCCC-CCTGCTCAGGATCTGTTCAGGCCTG---TGGCTGG-TTGCAGGTAGCA-CCTCCCCAGCCCATGCTATTACCACCCAGGACCATCAGAGGG----------CGCCCCGCCCCACCCCTCCTGGAGGCACAGCCGCCTTCAGCTCAGGCCCTACAGAGCTCACGCCCCAAAGGCCACACGGGctccctcacctga
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50417412 553 -  58131712 gtggtgcaatcacggc---tctctgcagcctcaacctcccaggctcaagggatcctcccacctcagccttccaagtagctgtg-accacaggcacatgcttccatgcccagctaatt--ttaaattttttgtgtagagatggggtttcactgggttgccgctggctgCTGGTCACATGTTAATACCCACCCCAAACACGGTTACAGAGGATCAGTCACACAGCTTGAGATGCACTCCCCCGGGGAGGTGGATAATCACATATCCCCAGACTCAGTGACACAGACACGCAAGTTCATCATACGCTGATGCAG--TCAC------ACATGTACATAT-gcgcgcgcgcgcgcgcgcacacacacacacacacacacacacacaG-GCCCCCCTGCTCAGGATCTGTTCAGGTCTG---TGGCTGGTTTGCAGGCAGTG-CCTCCCCAGCCCCTGTTATTACCACCCAGGACTGTCAGAGGGCGCCCTGC---------CCCCACCCCTCCTGGAGGCACAGCCCCCTTCAGCCCAGGCCCTATGGAGCTCAAGCCCCAAAGGCCACATGGGCTCCCTCACCTGA
i chlSab2.chr26             I 3952 C 0
s manLeu1.NW_012105520v1       354072 529 -   1458659 gtggtgcaatcacagc---tccctacaggctcaacctcctaggctcaaggg---ctcccacctcagcctcccaagtagctggg-accacaggcatgagccaccatgcccggctaattaaaaaaattttttttgtagacacggggtttcactgggttgcc-ccggctgCTGA--ACACGTT-ATACCCACCCCACACACGGTTCCAGGGGGTTGGTCACACAGCTTGAGATGCACTCCCTCGGGGAGGTGCATAATCACATGTCCCCAGACTCAGTGACACAGACACACGAGTTCATCAGACAC----GCAG--TCAC------ACATGTCCACAT-GTGCGTGTG--------------------CACATGTACACACACAG-GCCCCCCTGCTCAGGATCTGTTCAGGCCTG---TGGCTGGTTTGCTGGCAGTGTCTTCCCCAACCCCTGCTATTACCACCCAGGATCATCGGAGCATGCCCCGCCCC-----GCCCCACCCCTCCTAGAGGCACAGGTGCCCCCAACACAGGCCCTACAGAGCTCATGCCCCAAAGGCCACATGGGctccctcacctga
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3796092 538 -   4111199 gtggtgcaatcacagc---tccctgcagcctcaacctcctaggctcaaggg---ctcccacctcagcctcccaagtagctggg-accacaggcatgagccaccatgcccagctcatttaaaaatttttttttgtagagacggggtttcactcggttgcc-ccagctgCTGGACACGTGTT-ATACCCACCCCACACACGGTTCCAGGGGGTTGGTCACACAGCTTGAGATGCACTCCCTTGGGGAGGTGCATAATCACATGTCCCCAGACTCAGTGACACCGACACACGACTTCATCAGACACTGACGCAG--TCAC------ACACGTTCACAT-GCGCGTGTG----------------cacacacacacacacacacaG-GCCCGCCTGCTCAGGATCTGTTCAGGCCTG---TGGCTGGTTTGCTGGCAGCGTCTTCCCCAACTCCTGCTATCACCACCCAGGACCATCAGAGCATGCCTCGCCAC------CCCCATCCCTCCTAGAGGCACAGGCGCCCCCAACACAGGCCCTACAGAGCTCATGCCCCAAAGGCCACACGGGCTCCCTCACCTGA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             393306 449 -   3282555 gtggtgcgatcatggc---tccttgcagcctcaacctcccaggctcacgggatcctcccacctc------------agctggg-gccacaggcacgagccaccatgcccggttgaatt-ttaaatttttc-tgtagagatggggtttcactgggttgcccCTGGCTGCTGGTCACATGTTAATACCCACCCCGCACCCAGTTACAGGG-ATCGGTTGCACAGCTTGAGATGCACTCTTTCGGAGAGGTGCATAATCACATGTCCC------CAGGGACATAGACATGTGAGTCCATCATACGCTGACACGG--TCAC------ACATGTACA--------------------------------------------------------CATGCTGAGGCTCTGTTCAGGCCTG---CGGCTGGTTTGCAGGCAGCATCCTCCCCAGCACTCGCTATTACCCCCCAGGACCATCGGACGACGTCCCGCCCCCCAC--CCCCACCCCTCCGGGAGGCACAG---------------------------------------GGCCACACAGGctccctcacctga
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       182753 465 -   1024465 gtggtgcggtcatggc---tccttgcagccccagcctcccaggctcacgggatcctcccacctc------------agctggg-accacaggcacgagccaccatgccctgttgaatt-ttaaatttttc-tgtagagatggggtttcactgggttgcccCCGGCTGCTGGTCACATGTTAATACCCACCCCACACCCGGTTACAGGG-ATCGGTCACACAGCTTGAGATGCACTCTTTCGGAGAGGTGCATAATCACATGTCCCCAGACTCAGGGACACAGAC--GTGAGTTCATCATACGCTGACACGG--TCAC------AC--GTACA--------------------------------------------------------CATGCTCA---------------------GACTGGTTTGCAGGCAGCATCCTCCCCAGCCCTTGCTATTACCACCCAGGACCATCAGAGGGCGCCCCGCTCCAT---------CCCCTCCTGGAGGCACAGGCACCTCCAGCACGGGCCCTGCAGGGCTCACGCCCCGAAGGCCACACGGGCTCCCTCACCTGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       984040 484 +   3745603 gtggtgtgatcatggc---tctttgcagcctcaacctcccaggctcacgggatcctcccacctc------------agctggg-acaacaggcatgtgccaccatgcccggctgattt-ttaaatttttc-tgtagagatggggtttcactgggttgcccCTGGCTGCTGGTCACATT---ATACCCACCCCACACCCGGTTACAGGG-TTCAGTCACACAGCTTGAGATGCACTCTTTCGGAGAGGTGCATAATCACATGTCCCCAGACTCAGGGACACAGATATGTGAGTTCATCATACGCTGACACGG--TCAC------ACCTGTACA--------------------------------------------------------CATGCTCAGGCTCTGTTCAGGCCTG---CGGCTGGTTTGCAGGCAGCATCGTCCCCAGCCCTTGCTATTACCACCCAGGACCATCAGAGGGCGCCCCGCCCCAC---------CCCCTCCTGGACGCGCGGGCACCTCCAGCACAGGCCCTACAGGGCTCATGCCCCGAAGGCCACATGGGctccctcacctga
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr30              38474492 300 +  40214260 ------------------------------------------------------------------------------------------------------------------------------------ATGCAGCCGG-------CTGGGCCTCC-CCACCCGCTGCTCACTCGTG-------------------------------------------------CACACTCCCCAAGAGGTGTACGCGGTCACA--CCTCCAGACTCGGTGACTCAGATGCACAATTTCTCTACACACTGATGTGGATCCAC------ACACGTAGGCCTCACGGGTGTC-----------------------------GCACCCTGTACCCGCCCGCTC-------GCCCATgcccg---cgggccg------------------cccggcctccgcgggggccACTGCTCACCACCAGAGGGCGCTCCG---------------TCCCTTCGGGAGGCAGA----CTCCGCACACAGGGCCT--GGGGC-----CCGCGAGGACCGC-CGCGC-CCCCCACCTGA
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             834294 292 +   1040364 ----------CACAGCACAGCCACGAGGCCACAGCCTCTGAGACACACAAT-----CCCACC--------------------G-ACCA--------------------------------------------------------TCTCACCG---CACC-CTG----------ACGTGTG-----------------------------------------GGCTGACACACACGTGCTCG-------------TCACA-------------------------------------CACGTACCAACGTGT--GCAC------ACAGGCACACGC-CCAGAGGCT--------------------------------------GCC--CCTGCTGGGGCCGTGTTGTCGCTCAACCCGGATGGTTTGCCTGGAGC--TCCCGCCAGCCCCTGCTGTTGCCACCCCTCACCACCAGAGGGCCCC------------------TTCTCCTTAGAGGTGCAGGCTCCTCGGG--GAGGCCCTGCCCAGC----------------------GCCCCTGCACCTGa
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  67705128 537 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=16840266.000000
s hg38.chr15_KI270850v1_alt    102469 3190 +    430880 TGGGCCATCCACAAGAGGC--TAAACTGCCTccaaactcacattcctg-ttttgtgccttcggccggaatgttccttttgcgtggaataccactccccattctctgctcctaatggcctgtactcttcagagcccggcccaaacactgcctcctcccatg--aggcc--------ttcctgatgccagatctgctggctcaccatgggccccAAGCTCCAG--ATGCAG-A-CCAGAAGGGTCTCCGAAATAAGCAGTGTGGAAGAGTAAGGCTGAGAGCGGGCAA-GGACTGGCCTGAGGTCACAGGGCATGTC-------AG---ATCT-CTGGAAGGCCCGTGGCTGCTCTGTGGGGTTCCTGGGTGAGCAGAAGCCCTTGACAGACCCTCCTGGTCCTGGTCTGGGCTCTGAGAAGAGAGCGGGGTACACAGGGGTCTGAGAGGCAGC--GGCCTGTCTCCACGGCCAGCAATCCCAAAAGTTCAGGACCCGTGATGCCCTCccagggaac----tgactgcaatgcagattctcgggctccacttcagagattctgtagggct--gggtggcgtccaggaatctgCATGCTCAGCCATGCCATGGACATGAGTGGACACCAGCTCTAGAGGCACACACCACTCCCAGGAGGATGGGTGTACAGCAAGCTCCCCAGAAACTCTTGGGAACACAACATATATGGGAGCACATCTGAGGCACGTGCACACACACAA-GCT-GGGACCACCACAGGTACAGCCCAAGT-CACATGTGTTCCCGGCATGGAGGCTGGG--------AGGAAGG---CCCTCTACCTGGTCCACA--CCCCGCTCACCACCTCCAGCTCCTCACCTCCAGCTGGTCCCTTCTGATCTCAGCTGCCTCTCCCTGGAAGATGTAGATCTCCTTGTGCTGGGCCAGCTTCAGTGGGGCTACTGGGCCCTCTAGGGCAATGGTCACTTGTAGGGTGGCATCTGTGTGCACTGGTCCCACATCCATTGAGAAGGCCAGGGTGTTGCGGGAGCTGAGGCTGCCATTGTGGCCATAGAAAACAGCCCCAACCAGCAGGTCCTGCTGAGAGAAGGCTGTGGCTGGCTGAGTGGCTTGGAGCAACTGTCCCCAGTGAGGGCTGTCTGTGACGTGGTAGTGGGCCTCATCCCTACTGCAGATGTTGAGGTTGGTGCCCAGGTGGAGCTCGGCCATGTTGATGGTACCCTGGCCTCCTTGAGGAACCATGAGGCCGGAGCCATTGGCCACACAGAGGTAAGGCTCCAAGGCCTGCACCTCCAGCACCGTGATGGCCTGGTGCTGCCCATCGG--ACACCTGCAGCGGGATCCAGCCGTGGTCAG--CCTGAGTGTGTGAACAGGACTCGCCTCTTCCTGAGGCCCCTCCTGGATGAAGCGGCAGATGGGCTGCATGGGCTCATCCGTGGCCATGATACTGCCAGAGAGGAGGTCCTGGTGGGTCAGCACCAGCTGGGCCTCAGCAAAGCCCGAATCAGCATTGCTGAAGGCCATGTTGTCTGTAGTCAGCAGCCGCCACCTACCCCAGGCCACGTGGAAGACGCAGCTGATGGTCTGCATAGGGGCGTGGTCATTCACAGGCTGGATGGCCACTCAGAAGACACCCCATACCTCCTCCCAGGCCACGTCACCACTGCTCTGGTCCTGAT-GGCAGCAGGAAATGGGATATCATCTTCTGTGATCTCGGAGTCATCATGCTGCTAGACCAGCTGGCCATGCATCAGGTCTCCATTGGTGAAGGATGTCACCATAGTGATCTTGTCCTGTGTCCCACGCCAAGTCAACCTCCCATGGC-GGGGCTGCTCCATGACCTCATAGAGGTACCTGGCACTGTTGAGACTCTTGATGAAGAGCTGGTCAGCAGAGAGGACACACCCACCACCCTCGGGCACCAC---------------GAGGACAGGCATGTCTGGGTCACCGCCAATATGGATGGAGAAGGTACAGAGTGGGGAGAAATATGGTGGAGCTGTGACATGGAAACAGAAGGTGTCCTCCACTGCCACTGAGGCATGTGCCATGGCCCCATAGGTCACCTCTGCAGCCTGTACGTCATCCTGGGTGAAGCCCTGACCGTCTGACAGCATCGTGCCCTGTAGTTGAAAGTTGCCTTTCCTGGGAGCCTGAACCACCTCACAGTGGAAGGTTGGGGGGCTTGGGCCTGCC------------TCCTCCAGGGTGGCCTCCAGGTGGGCTGTGGTGAGGGCCTCCTGCTGGGTGTTCTGAGTGTGCAGTGGCTCCAGCTGCAGCATCCACACAGTGGCTCTCTGGATGGTCACTAGGAAGGACAGATTGCTCAGGATTTCCCAGCTCACCTGCACCTGCAGATCCAGGTTCTCCACGGTGTCCTCGGTGTAGTGCTGTGGGTCAGTGCTCAGGTACCTCACGTGGCCCTGCTCCACATCCTGCTGGTGGAACGCCTGTGTGACCCACCACTCAGCATCCTCCACCCCACCAGCCCCCTGCTTCTGCAGCTCCCTGAACGGCAGGCCTCCGGTGACACGGAACAGCACGGTCACATCCTGCCCCACGGCGCTGGTCTCCACCAACAGGTTGGTAGGCAAGATGGGCATGGCAGAGCCCTGGGCCAGATGCAGCCCTGTGCTGCGGTGGATTTGTATGGCCAGCTGGACAGCCACCACCTTCAGCATGGCCGG---GGGGCTGGCCTGCAGTCCATTGCTGACCCGGAATGTCAAGTCCTGTGTAGGGCCACCACAGTGGACATAGACTAGGCTGCCGGCCTCCAACTCCCAGCAGGAGAACTCAGTCACCGGCTCCCCAGGCT-------GGTCTCGGTGCTCCACGGGGAGGCCAGAGGGGGTGCCAAGGAGCTGGAAGGTGAGGCCCTCACAGGCAGAGTCCAGGTCATAGGCCTGGAGAACCTCAGGCCCCAGAGGCTTCTGTGTGTGTTCCAGGATCACCATAAGGCTGCCATGTGGGAAGATGATGTGGGGTGGGTCATTGACAGGGTTGACCTGGATGGGCAGGAGGTCTGTTTGGCCCCTCCGCAGGCATGAGGGCATGGGCAACCAAGCCATCACTGACACCTCCAGCACCAGCTGGTCAGAGGTGTCCTCAGGGCCATCGTGGATGAAGCGGGCCTTGCAGTTCACCACGTCCAGGAGGGTGAACATTTTTCATGCCTGGGCACCCAGGACATCCAGCTCGAGCTCGCTGTAGTGTGCCCCTCAGGTCACGCTGAA-----------------CAGCACCTGGGATTT
s panTro5.chr15              17339677 3187 -  83230942 tgggccatccacaagaggc--taaactgcctccaaactcacattcctg-ttttgtgccttcggccggaatgttccttttgcctggaataccactccccattctctgctcctcatggcctgtactcttcagagcccagcccaaacactgcctcctcccatg--aggcc--------ttcctgatgccagatctgctggctcaccatgggccccAAGCTCCAG--ATGCAG-A-CCAGAAGGGTCTCCGAAATAAGCAGTGTGGAAGAGTAAGGCTGAGAGCGGGCAA-GGACTGGCCTGAGGTCACAGGGCATGTC-------AG---ATCT-CTGGAAGGCCCGTGGCTGCTCTGTGGGGTTCCTGGGTAAGCAGAAGCCCTTGACAGACCCTCCTGGTCCTGGTCTGGGCTCTGAGAAGAGAGCAGGCTACACAGGGGTCTGAGAGGCAGC--GGCCTGTCTCCACGGCCAGCAATCCCAAAAGTTCAGGACCTGTGATGCCCTTccagggaac----tgactgcaatgcagattctcgggctccacttcagagattctgtagggct--gggtggcgtccaggaatctgcatGCTCAGCCATGCCATGGACATGAGTGGACACCAGCTCTAGAGGCACACACAACTCCCAGGAGGATGGGTGTACAGCAAGCTCCCCAGAAACTCTTGGGAACACAACATATATGGGAGCACATCTGAGGCACATGCACACACGCAA-CCT-GGGACCACCATAGGTACAGCCCAAGT-CACATGTGTTCCCGGCATGGAGGCTGGG--------AGGAAGG---CCCTCTACCTGGTCCACA--CCCCGCTCACTACCTCCAGCTCCTCACCTCCAGCTGGTCCCTTCTGATCTCAGCTGCCTCTCCCTGGAAGATGTAGATCTTCTTGTGCTGGGCCAGCTTCAGTGGGGCTACTGGGCCCTCTAGGGCAATGGTCACTTGTAGGGTGGCATCTGTGTG---TGGTCCCACATCCATTGAGAAGGCCAGGGTGTTGCGGGAGCTGAGGCTGCCATTGTGGCCATAGAGAACAGCCCCAACCAGCAGGTCCTGCTGAGAGAAGGCTGTGGCTGGCTGAGTGGCTTGGAGCAACTGTCCCCAGTGAGGGCTGTCTGTGACATGGTAGTGGGCCTCATCCCTACTGCAGATGTTGAGGTTGGTGCCCAGGTGGAGCTCGGCCATGTTGATGGTACCCTGGCCTCCTTGAGGAACCATGAGGCCGGAGCCATTGGCCACACAGAGGTAAGGCTCCAAGGCCTGCACCTCCAGCACCGTGATGGCCTGGTGCTGCCCATCGG--ACACCTGCAGCGGGATCCAGCCATGGTCAG--CCTGAGTGTGTGAACAGGACTCGCCTCTTCCTGAGGCCCCTCCTGGATGAAGCGGCAGATGGGCTGCATGGGCTCATCCGTGGCCATGATACTGCCAGAGAGGAGGTCCTGGTGGGTCAGCACCAGCTGGGCCTCAGCAAAGCCCGAATCAGCATTGCTGAAGGCCATGTTGTCTGTAGTCAGCAGCTGCCACCTACCCCAGGCCACATGGAAGACGCAGCTGATGGTCTGCATAGGGGCGTGGTCATTCACAGGCTGGATGGCCACTCAGAAGACACCCCATACCTCCTCCCAGGCCACGTCACCACTGCTCTGGTCCTGGT-GGCAGCAGGAAATGGGATATCATCTTCTGTGATCTCGGAGTCATCATGCTGCTAGACCAGCTGGCCATGCATCAGGTCTCCATTGGTGAAGGATGTCACCATAGTGATCTTGTCTTGTGTCCCACGCCAAGTCAACCTCCCATGGC-GGGGCTGCTCCATGACCTCATAGAGGTACCTGGCAGTGTTGAGACTCTTGATGAAGAGCTGGTCAGCAGAGAGGACACACTCACCACCCTCGGGCACCAC---------------GAGGACAGGCATGTCTGGGTCACCGCCAATATGGATGGAGAAGGTACAGAGTGGGGAGAAATATGGTGGAGCTGTGACATGGAAACAGAAGGTGTCCTCCACTGCAACTGAGGCATGTGCCATGGCCCCATAGGTCACCTCTGCAGCCTGTACGTCATCCTGGGTGAAGCCCTGACCGTCTGACATCATCGTGCCCTGTAGTTGAAGGTTGCCTTTCCTGGGAGCCTGAACCACCTCACAGTGGAAGGTTGGGGGGCTTGGGCCTGCC------------TCCTCCAGGGTGGCCTCCAGGTGGGCTGTGGTGAGGGCCTCCTGCTGGGTGTTCTGAGTGTGCAGTGGCTCCAGCTGCAGCATCCACACAGTGGCTCGCTGGATGGTCACTAGGAAGGACAGATTGCTCAGGATTTCCCAGCTCACCTGCACCTGCAGATCCAGGTTCTCCACGGTGTCCTCGGTGTAGTGCTGTGGGTCAGTGCTCAGGTACCTCACGTGGCCCTGCTCCACATCCTGCTGGTGGAACACCTGTGTGGCCCACCACTCAGCATCCTCCACCCCACCAGCCCCCTGCTTCTGCAGCTCCCTGAACTGCAGGCCTCCGGTGACACGGAACAGCACGGTCACATCCTGCCCCACAGCGCTGGTCTCCACCAACAGGTTGGTAGGCAAGATGGGCATGGCAGAGCCCTGGGCCAGATGCAGCCCTGTGCTGCGGTGGATTTGTATGGCCGGCTGGACAGCCACCACCTTCAGCATGGCCGG---GGGGCTGGCCTGCAGTCCATTGCTGACCCGGAACGTCAAGTCCTGTGCAGGGCCACCGCAGTGGACATAGACTAGGCTGCCGGCCTCCAACTCCCAGCAGGAGAACTCAGTCACTGGCTCCCCAGGCT-------GGTCTCGGTGCTCCACGGGGAAGCCAGAGGGGGTGCCAAGGAGCTGGAAGGCGAGGCCCTCACAGGCAGAGTCCAGGTCATAGGCCTGGAGAACCTCAGGCCCCAGAGGCTTGTGTGTGTGTTCCAGGATCACCATAAGGCTGCCATGTGGGAAGATGATGTGGGGTGGGTCATTGACAGGGTTGACCTGGATGGGCAGGAGGTCTGTTTGGCCCCTCCACAGGCATGAGGGCATAGGCACCCAAGCCATCACTGACACCTCCAGCACCAGCTGGTCAGAGGTGTCCTCAGGGCCATCGTGGATGAAGCGGGCCTTGCAGTTCACCACGTCCAGGAGGGTGAACATTTTTCATGCCTGGGCACCCAGGACATCCAGCTCGAGCTCGCTGTAGTGTGCCCCTCAGGTCACGCTGAA-----------------CAGCACCTGGGATTT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        25647 3204 -    378907 tgggccatccacaagaggc--taaactgcctccaaactcacattcctg-ttttgtgcctttggccggaatgttccttttgcctggaataccactccccattctctgctcctaatggcctgtactcttcagagcccagcccaaacactgcctcctcccatg--aggcc--------ttcctgatgccagatctgctggctcaccatgggccccAAGCTCCAG--ATGCAG-A-CCAGAAGGGTCTCCGAAATAAGCAGTGTGGAAGAGTAAGGCTGAGAGCGGGCAA-GGACTGGCCTGAGGTCACAGGGCATGTC-------AG---ATCT-CTGGAAGGCCTGTGGCTGCTCTGTGGGGTTCCTGGGTAAGCAGAAGCCCTTGACAGACCCTCCTGGTCCTGGTCTGGGCTCTGAGAAGAGAGCAGGCTACACAGGGGTCTGAGAGGCAGC--GGCCTGTCTCCACGGCCAGCAATCCCAAAAGTTCAGGACCTGCGATGCCCTCccagggaac----tgactgcaatgcagattctcgggctccacttcagagattctgtagggct--gggtggcgtccaggaatctgCATGCTCAGCCATGCCATGGACATGAGTGGACACCAGCTCTAGAGGCACACACAACTCCCAGGAGGATGGGTGTACAGCAAGCTCCCCAGAAACTCTTGGGAACACAACATATATGGGAGCACATCTGAGGCACGTGCACACACGCAA-GCT-GGGACCACCACAGGTACAGCCCAAGT-CACATGTGTTCCCGGCATGGAGGCTGGG--------AGGAAGG---CCCTCTACCTGGTCCACA--CCCCGCTCACCACCTCCAGCTCCTCACCTCCAGCTGGTCCCTTCTGATCTCAGCTGCCTCTCCCTGGAAGATGTAGATCTTCTTGTGCTGGGCCAGCTTCAGTGGGGCTACTGGGCCCTCTAGGGCAATGGTCACTTGTAGGGTGGCATCTGTGTGCACTGGTCCCACATCCATTGAGAAGGCCAGGGTGTTGCGGGAGCTGAGGCTGCCATTGTGGCCATAGAGAACAGCCCCAACCAGCAGGTCCTGCTGAGAGAAGGCTGTGGCTGGCTGAGTGGCTTGGAGCAACTGTCCCCAGTGAGGGCTGTCTGTGACGTGGTAGTGGGCCTCATCCCCACTGCAGATGTTGAGGTTGGTGCCCAGGTGGAGCTCAGCCATGTTGATGGTACCCTGGCCTCCTTGAGGAACCATGAGGCCGGAGCCATTGGCCACACAGAGGTAAGGCTCCAAGGCCTGCACCTCCAGCACCGTGATGGCCTGGTGCTGCCCATCGG--ACACCTGCAGCGGGATCCAGCCGTGGTCAG--CCTGAGTGTGTGAACAGGACTCGCCTCTTCCTGAGGCCCCTCCTGGATGAAGCGGCAGATGGGCTGCATGGGCTCATCCGTGGCCATGATACTGCCAGAGAGGAGGTCCTGGTGGGTCAGCACCAGCTAGGCCTCAGCAAAGCCCGAATCAGCATTGCTGAAGGCCATGTTGTCTGTAGTCAGCAGCTGCCACCTACCCCAGGCCACATGGAAGACGCAGCTGATGGTCTGCATAGGGGCGTGGTCATTCACAGGCTGGATGGCCACTCAGAAGACACCCCATACCTCCTCCCAGGCCACGTCACCACTGCTCTGGTCCTGGT-GGCAGCAGGAAATGGGATATCATCTTCTGTGATCTCGGAGTCATCA---TGCTAGACCAGCTGGCCATGCATCAGGTCTCCATTGGTGAAGGATGTCACCATAGTGATCTTGTCCTGTGTCCCACGCCAAGTCAACCTCCCATGGC-GGGGCTGCTCCATGACCTCATAGAGGTACCTGGCACTGTTGAGACTCTTGATGAAGAGCTGGTCAGCAGAGAGGACACACTCACCACCCTCGGGCACCAC---------------GAGGACAGGCATGTCTGGGTCACCGCCAATATGGATGGAGAAGGTACAGAGTGGGGAGAAATATGGTGGAGCTGTGACATGGAAACAGAAGGTGTCCTCCACTGCCACTGAGGCACGTGCCATGGCCCCATAGGTCACCTCTCCAGCCTGTACGTCATCCTGGGTGAAGCCCTGACCGTCTGACATCATCGTGCCCTGTAGTTGAAGGTTGCCTTTCCTGGGAGCCTGAACCACCTCACAGTGGAAGGTTGGGGGGCTTGGGCCTGCC------------TCCTCCAGGGTGGCCTCCAGGTGGGCTGTGGTGAGGGCCTCCTGCTGGGTGTTCTGAGTGTGCAGTGGCTCCAGCTGCAGCATCCACACAGTGGCTCTCTGGATGGTCACTAGGAAGGACAGATTGCTCAGGATTTCCCAGCTCACCTGCACCTGCAGATCCAGGTTCTCCACGGTGTCCTCGGTGTAGTGCTGTGGGTCAGTGCTCAGGTACCTCATGTGGCCCTGCTCCACATCCTGCTGGTGGAACGCCTGTGTGGCCCACCACTCAGCATCCTCCACCCCACCAGCCCCCTGCTTCTGCAGCTCCCTGAACTGCAGGCCTCCGGTGACACGGAACAGCACGGTCACATCCTGCCCCATGGCGCTGGTCTCTACCAACAGGTTGGTAGGCAAGATGGGCATGGCAGAGCCCTGGGCCAGATGCAGCCCTGTGCTGTGGTGGATTTGAATGGCCGGCTGGACAGTCACCACCTTCAGCACGGCCGG---GGGGCTGGCCTGCAGTCCATTGCTGACCCGGAATGTCAAGTCCTGTGTAGGGCCACCGCAGTGGACATAGACTAGGCTGCCGGCCTCCAACTCCCAGCAGGAGAACTCAGTCACCGGCTCCCCAGGCT-------GGTCTCGGTGCTCCACGGGGAGGCCAGAGGGGGTGCCAAGGAGCTGGAAGGCGAGGCCCTCACAGGCAGAGTCCAGGTCACAGGCCTGGAGAACCTCAGGCCCCAGAGGCTTCTGTGTGTGTTCCAGGATCACCATAAGGCTGCCATGTGGGAAGATGATGTGGGGTGGGTCATTGACAGGGTTGACCTGGATGGGCAGGAGGTCTGTTTGGCCCCTCCGCAGGCATGAGGGCATAGGCACCCAAGCCATCACTGACACCTCCAGCACCAGCTGGTCAGAGGTGTCCTCAGGGCCATCGTGGATGAAGCGGGCCTTGCAGTTCACCATGTCCAGGAGGGTGAACATTTTTCATGCCTGGGCACCCAGGACATCCAGCTCGAGCTTGCTGTAGTGTGCCCCTCAGGTCACGCTGAACAGCACCTGGGAAATCCCAGCACCTGGGAAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95272784 3193 + 121039945 tgggccagccacaagaggc--caaaccgcccccaaactcacattcctt-ttctatgcatttgcctggaatgctccttctgcctggaataccactccccattctctgcccctgatggcctgtgctctttagagcccagcccaaacgctgcctcctcccgcg--aggcc--------ttcctgactccAGATCTGCCAGCTCGCTGTCGGCCCCAAGCTCCAGACATGCAG-A-CCAGAAAGGTCTCCGAAATGAGCAGTGTaggagagtaaggccgagagcgggcaa-ggactggcctgaggtcacagggcaagtc-------agtgAGCCTGCTGGAGGGCCCGTGGCTGCTCTGTGGGGTTCCTGGGTGGGCAGAAGCC-----------------ACCCAGGTCTGGGCTCTGAGAAAAGAGCGGGGGACATGAGGGTCTGAGGAGCAGC--TGCCTGTCTCCAGGGCcagcaatccccaaagctcaggacccgtgatgccctcccagggaac----tgactgcaatgcagattctcgggctccatgtcagagattctgtagggct--gggtggggtccaggaatctgcatGCTCAGCCACGTCATGGACACGAGTGGACACAACCTCTGGAGGCACACACAACTCCCAGGAGGATGGGTGTACAGCAAGCTCCCCAGAAACTCTTGGGAGCACAACATATACAGGAGAATATTTGAGGCACGTGCACACATGTAA-CCT-GGGGCCACCACAGCCACAGCCCAAGT-CACACGTGTACCTGGCATGGAAGCTGGG--------AGGAAGG---CCCTCTACCTGGCCCAca-cccccactcaccacctccagctcctcacctccacctGGTCCCTTCTGATCTCAGCTGCCTCTCCCTGGAAGACATAGATCTTCTTCTGCCGGACCAGCTTCAGAGGGGCCAGTGGGCCCTCTAGGGCAATGGTCACTTGTAGGGCGGCATCCATGTGCACTGGCCCCATTTCCACGGAGAAGGGCAGGGTGTCATTGGGGCTGGGGCTTTCATTGTGGCTATGGAGAACGGCCCCATCCAGCAGGTCCTGCTGGGAGAAGGCTGTGGCTGGCTGACTGGCCCGGAGTAGCTGTCCCCAGCGAGGGCCGGCTGTGACGTGGTAGTGGATCTCATCCCCACTGCGGATGTCGAGGTTGGTGTCCAGGTGGAGCACGGCCGTGTCGATGGCGCCCTGGCCTCCTTGAGGGACCACAAGGCTGGAGCCGTTGGCCACACGGAGGTAGGGCTCCGAGGCCTGCACCTCCAGCAGCGTAGTGTCCTGGTGTTGCCCATCGG--ACACCTGCAGCTGGATCCAGCCATGGTCGGCCCCTGAGTGCACGAACAGTACTCGCCTCTTCCTGAGG-TCCTCCTGGGTGAAGCGGTAGATGGGCCGTGTGGGCTCATCTACGGCCACGATACTGCCAAAGAGGAGGTCCTTGCGGGTCAGCACCAGCTGGGCATCAGCAAAGCCCGAGTCAGCATCGCTGAAGGCCACGTCGTCCGTAGTCAGCAGCCGCCGCCCGCCCCGGGCCACATGGAAGATCCGGCTGATGGTCTGCACAGGGGCGTGGTCATTCACGGGCTGGATGGCCACTCGGAAGACACCCCGTACCTCCTCCCAGGCCATGTCACCACTGCTCTCGCCCTGGCGGGTAGCAACAAATGGGATATCATCTTCTGTGGTCTCGGAGTCATCATGCTGGTAGACCAGCCGGCCACGCAACAGGTCTTCGTTGGTGAAGGATGTCACCATAGTGGTCTTGTCCTGTGTCCCACGCCAAGCCAACCTCCCATGGC-GGGGCCGCTCCATGACCTCATAGAGGTAGCTGGCACTGTTGAGACTCTTGACAAAGAGGCGGGCAGCAGAGAGGACACTCTCACCACCCTCAGGCACCACAAGGAAGACATTGGTGAGGATGGGCACGTCTGGGTCATCACCAATGTGGATGGAGA--GTACAGAGCAGGGGGAA--TGGGTGGAGCTGTGACATGGAAACAGAAGGTGTGCTTGACTGCCTCCGAGGCACGTGCCATGGCCCCATAGGTCACCCGGCCAGCCTGTATGTCATCTTGGGTCAAGCCCTGGCCATCTGACAGCCTCGTGCCCTGTAGTTGAAGGTTGCCTTTCCTGGGAGCCTGAACCACCTCATAATGGAAGGTTGGGGGGCTTGGGCCTGCC------------TCCTCCAGGGTGGCCTCCAGGTGGGCTGTGGTGAGGGTCTCCTGATGGGTGTTCTGAGTGTGCAGTGGCTCCAGCCACAGCATCCACACGGTGGCTCTCTGGATGGTCACTGGGAAGGACAGATTGCTCAGGATTTCCTGGCCCACCTGCACCTCCAGGGCCAGGTTCTCCACGGTGTCGTCAGTGTGGTGCTGTGGGTCGGTGCTCAGGTACCTCACGCGGCCCTGCTCCACATCCCGCTGGTGGAACGCCTGTGTGGCCCACCACTCAGCACCCTCCACCCCACCTGCCCCCTGCTTCTGCAGCTCCCCGAACTGCAGGGCACCAGTGACGCGGAATAGCACGCTCACATCCTGCCCCACGGCACTGGTCTCCACCGACAGGTTGGCGGGCAAGATGGGCATGGCAGAGCCTTGGGCCAGGCGCAGCCCTGTGCTGCGGTGGATCTGTATGGCTGGCCGGATGGCCACCACCTTCAGCGTGGCCGG---GGGGCTGGCCTGCAGTCCATCGCTGACCCGGAACGTCAAGTCCTGCGCAGGGCCACCGCGGTGGACATAGACTAGGCTGCCGGCCTCCAACTCCCGGCAGGAGAACTCGGTTGCCGGCTCCCCAGGCT-------GGTCTCGGCGCTCCACGGGGAGGCCAGAGGAGGTGCCAAGGACCTGGAAGGCGAGGCCCTCACAGGCAGAGTCCGGGTCATAGGCCTGGAAAACCTCGGGCCCCAGAGGCTTCTGCGTGTGTTCCAGGATCACCATGAGGCTGCCATGTGGGAAGATGATGTGGGGTGGGTCGTTGACAGGGTTGACCTGGATGGGCAGGAGGTAAGTTTGGCCCCTCCGCAGGCATGAGGGCATGGACACCCGAGCCGTCACTGACACGTCCAGCACCAGCTGGTCGGAGGTGTCCTCAGAGCCATCGTGGATGAAGCGGGCCTTGCGGTTCACCACGTCCAGGAGGGTGAACATTTTTCGTGCCTGGGCTCCCGGGATGTCCAGCTCGAGCTCGCCATGGCGTGCCCCTCGGGTCACGCTGAA-----------------CAGCACCTGGGATTT
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50417965 3188 -  58131712 TGGGCCAATCACAAGAGGC--TAAACCACCCTcaaactcacattcctg-ttctatgcctttccctggaatgttcctcctgcctggaataccactccccattttctgctaccgatggcctgtgctcttcagagcctggcccaaacactgcctccttccgca--aggcc--------ttcctgatgccAGATCTGCTGGCTCACTGTCGGCCCCAAGCTCCAGACATGCAG-A-CCAGAAGGATCTCCGAAATAAGTAGTGTGGGAGAGTAAGGCT--GAGCGGGCAA-GGACTGGCCTGAGGTCACAGGGCAAGTCCTGCTGGAGTGAGCCTGCTGGAGGGCCCGTGGCTGCTCGGCGGGGTTCCTGGGTGGGTAGAAGCCCTTGACAGACCCTCCTAGTCCTGGTCTGGGCTCTGAGAAAATAGCAGGGAATATGTGGATCTAAAGAGCAGC--CACCTGTCTCCATGGCCAGCAATCCCCAAAGTTCAGGACCCATGATGCCCTCCCAGGAAAC----TGACTGCaacgcagattcttgggctccacttcagagattcagtagggct--tggtggggcccaggaatctgcatGCTCAGCCACGCCATGGACATGAGTGGACACGACCTCTGGAGGCACACACAACTCCCAGGAGGATGGGTGTACAGCAAGCTCCCCAGAAACTCTTGGGAGCACAACATATACGGGAGCACATCTGAGACCCCTGCACACATGCAA--CT-GGGACCACCACAGCCACAGCCCAAGT-CACATGTGTACCTGGCATGGAGGCTGAG--------GGGGAGG---CCCTCTACCTGGCCCACA-CCCCCGCTCACCA--------------CCTCCAGCTGGCCCCTTCTGATCTGAGCTGCCTCTCCCTGGAAGACATAGATCTTCTTGTGCCGGACCAGCTTCAGTGGGGCCAGTGGGCCCTCTAGGGCAACGGTCACTTGTAGCGTGGCATCCGTGTGCACAGGCCCCATTTCCATTGAGAAGATCAGGGTGTCACGGGTTCTGAGGCTGCCATTGAGGCGGTAGAGAATGGCCCCGTCTAGCAGGTCCTCCTGGGAGAAGGCTGTGACTGACTGAGTGGCCCAGAGCAACTGCCCCCAGCGACGGCCGGCTGTGACATGGTAGTGCACCTCATCCCCACTGCGGATGTCAAGGTTGGTGTCCAGGTGGAGCTCAGCTGTGTCAATGGTGCCCTGACCTCCTTGAGGGACCACAAGGCCAGAGCCGTTGGCCACACGGAGGTAGGGCTCCGAGGCCTGCACCTCCAGCAGCACAGTGGCCTGGTGTTGCCCATCGGACACACCTGCAGCTGGATCCAGCCATGATCAG--CCCAAGTGCATGAACAGGACTCGCCTCTTTCTGAGGT-CCTCCTGGGTGAAGCGGTAGATGGGCCACGTGGGCTCATCCACGGCCACGATACTGCCAAAGAGGAGGTCCTTGCGGGTCAGCACCAGCTGGGCGTCAGCAAAGTCCGAGT--------CTGAAGGCCACGTCGTCTGTAGTCAGCAGCCGCCACCCACCCCGGGCCACATGGAAGACGCGGCTGATGGTCTGCACAGGGGCGTGGTCATTCACGGGTTGGATGGCCACCCGGAAGACACCCCGTACCTCCTCCCAGGCCATGTCACCACTGCTCTCACCCTGGCGGGTAGCAACAAATGGGATATCATCTTCTGTGGTCTCGGAGTCATCATGCTGGTAGACCAGCCGGCCACGCAACAGGTCTTCATTGGTGAAGGATGTCACCATAGTGGTCTTGTCCGGTGTCCCACGCCAAGCCAACCTCCCATGGC-GGGGCCGCTCCATGACCTCATAGAGGTAGCTGGCACTATTGAGACTCTTGACAAAGAGGTGGTCAGCAGAGAGGACACCCTCACCACCCTCAGGCACCACGAGGAGGACATTGGTGAGGACGGGCGCCTCTGGGTCACCACCAATGTGGATGGGGAAGGTATAGAGCGGGGAGAAATATGGCGGAGCTGTGACACGGAAATGGAAGGTGTCCTCGACTGCCTCCGAGGCACGTGCTGTGGCCCCATAGGTCACCCGGCCACCCTGTATGTCATCCTGGGTGAAGCCCTGACCGTCTGACAGCCTCGTGCCCTGTAGTTGAAGGTTGCCTTTCCTGGGAGCCTGAACCACCTCATAGTGGAAGGTTGGGGGGCTTGGGCCTGCC------------TCCTCCAGGGTGGCCTCCAGGTGGACTGTGGTGAGGGTCTCCTGCTGGGTGTTCTGAGTGTGCAGTGGCTCCAGCCGCAGCATCCACACGGTGGCTCTCTGGATGGTCACTGGGAAGGACAGATTGCTCAGGATCTCCTGGCCCACCTGCACCTCCAGGGCTAGGTTCTCCACGGTGTCCTCGGTACGGTGCTGTGGGTCGGTGCTCAGGTACCTCACGCGGCCCTGCTCCACATCCCGCTGGTGGAACGCCTGTGTGGCCCACCACTCAGCACCCTCCACCCCACCTGCCCCCTGCTTCTGCAGCTCCCCGAACTGCAGGGCTCCGGTGACGCGGAACAGCACGCTCACATCCTGCCCCACGGCATTGGTCTCCACCGACAGGTTGGCGGGCAAGATGGGCATGGCAGAGCCTTGGGCCAGGCGCAGCCCTGTGCTGCGGTGGATCTGTATGGCCGGCCGGACGGCCACCACCTTCAGCGTGGCCGG---GGGGCTGGCCTGCAGTCCATCGCTGACCCGGAATGTCAAGTCCTGTGCAGGGCCACTGCGGTGGACATAGACTAGGCTGCCGGCCTCCAACTCCCGGCAGGAGAACTCGGTTGCCGGCTCCCCAGGCT-------GGTCTCGGCGCTGCACGGGGAAGCCAGAGGGGGCGCCAAGGAACTGGAAAGTGAGGCCCTCACAGGCAGAGTCTGGGTCATAGGCCTGGAAAACCTCGGGCCCCAGCGGCTTCTGTGTGTGTTCCAGGATCACCATGAGGCTGCCATGTGGGAAGATGATGTGGGGTGGGTCATTGACAGGGTTGACCTGGATGGGCAGGTGGTAAGTTTGGCCCCTCCGCAGGCATGGGGGCATAGGCACCCGAGCCATCACTGACACCTCCAGCACCAGCTGGTCGGAGGTGTCCTCAGAGCCATCGTGGATGAAGCGGGCCTTGCGGTTCACCACGTCCAGGAGGGTGAATATTTTTTGTGCCTGGGCGCCCGG--------GCTTGAGCTCACCGTCACGTGCCCCTTGGGTCACGCTGAA-----------------CAGCAGCTGGGATTT
i chlSab2.chr26             C 0 I 10
s manLeu1.NW_012105520v1       354601 3211 -   1458659 tgggccatccacaagaggc--taaaccacccccaaactcacattcctg-ttctgtgcctttgcccggaatgttccttttgcctggaataccactccccattctctgctcccaatggcctgtgctcttcagagcccggcccaaacattgtctcctcccatg--aggcc--------ttcctgatgccagatctgctggcttgccgtgggccccAAGCTCCAGACATGCAG-A-CCAGAAGGGTCCCCGAAATGAGCAGTGTAGGAGAGTAAGGCCAAGAGCGGGCAA-GAACTGGCCTGAGGTCACAGGGCATGTC-------AGTGAGCTCACTGCAGGGCCCGTGGCTGCTCTGTGCGGTTCCTGGGTGGGCAGAAGCCCTTGACAGACCCTCCTAGTCCTGGTCTGGGCTCCGAGAAGAGAGCGGGATACATGGGGGTCTGAGGCGCAGT--GGCCTGTCTCCACGGCCAGCAATCCCCAAAGTTCAGGACCCGTGATGCCCTCccagggaac----tgactgcaatgcagattctcgggctccacttcagagattctgtagggct--gggtgcggtccaggaatctgcatGCTCAGCCACGCCATGGACACGAGTGGACAAGATCTCTAGAGGCACACACAACTCCCAGGAGGATGGGTGTACAGCAGGCTCCCCAAAAACTCTTGGGAACACAACATATACAGGAGCACATCTGAGACATGTGTACACACAGAA-TCT-GGGACCACCACAGCCACAGCCCAAGT-CACATGTGTACCTGGCATGGAGGCTGGG--------CGGGAGG---CCCTCTACCTGGTCCACT-ACCCCGCTCACCACCTCCAGCTCCTCGCCTCCAGCTGGTCTTTTCTGATCTCAGCTGCCTCTCCCTGGAAGATGTAGATCTTCTTGTGCCGGGCCAGCTTCAGTGGGGCTAGTGGGCCCTCTAGGGCAACAGTCACTTGTAGTGTGGCATCTGTGTGCACTGGCCCTGCTTCCATTGAGAAGGCCAGGGTGCTGCGGGGTCTGAGGCTGCCATTGTGGCCGTAGAGAATGGCCCCATGCAGCAAGTACTGCTGGGAGACGACTGTGGCTGGCTGAGTGGCCCGGAGCAATTGTCCCTAGCGACGACACTCTGTGACGTGGTAGTGGACCTCATCCCCACTGCGGATGTCGAGGTTGGTGCCCAGGTGGAGCTCGGCCGTGTTGATGGTACCCTGGCCTCCTTGAGGGACTGTGAGGCCAGAGCCACTGGCCACACAGAGGTAGGGCTCCAAGGCCTGCACCTCCAGCAGAGTGGTGGCCTGGTGCTGCCCATCAG--ACACCTGCAGCTGGATCCAG-CGTGGTCAG--CCCCAGTGTGCAAACAGGACTCACCTCTTCCTGAGGTCCCTCATGGATGAAGCAGTAGATGGGCTGCATGGGCTCATCCACATCCATGATACTGCCAAAGAGGAAGTCCTTGTGGGTCAGCACCAGCTGGGCATCAGCAAAGCCCAAATCAGCACTGCTGAAGACCACGTCGACTGTAGTCAGCAGCCGCCACCTACCCCGGGCCACATGGAAGACGTGGCTGATGATCTGCATAGGGGCGTGGTCATTCACGGGCTGGATGGCCACTTGGAAGACACCCCGTACCTCCTCCCAGGCCATGTCACCACTGCTCTCATCCTGGCGGGTAGCAACAAATGGGGTATCACCTTCTGTGACCTCAGAATCATCATGCTGGTAGACCAGCCGGCCACACAACAGGTCTCCATTGGTGAAGGATGTCACCATAGTGGTCTTGTCCTGTGTCCCATGCCAAGTCAACCTCCCATGGCGGGGGCCACTCCATGACCTCATAGAGGTAGCCGGCACTGTTGAGACTGTGG---AAGAGCTTGTCAGTAGAGAGGACACCCTCATCATCCTCAGGCACCAC---GAGGACATTGGTGAGGACAGGCATGTCTGGGTCACCGCCAGTATGGATGGAGAAGGTACAGAGCAGGGAGAAATATGGTGGAGCTGTGACACAGAAACAGAAGGTGTCCTCCACTGCCACTGAGGTGCGTGCCGTGGCCCCACAGGTCACCTGGCCAGCCTGTACATCATCCTGGGTGAAGCCCTGGCCGCCTGACAGCCTCGTGCCCTGTAGTTGAAGGCTGCCTTTCCTGGGAGCCTGAACCACCTCATAGTGGAAGGTTGGAGGGCTTGGGCCTG------------------CCAGAGTGGCCTCCAGGTGGGCTGTGGTGAGGGTGTCATGCTGGGTGTCCTGAGTGTGCAGTGGCTCCAGCCGTAGCATCCACACTGTGGCTCTCTGGATGGTCACTGGGAAGGACAGATTGCTCAGGATTTCCCAGCCCACCTGCACCTCCAGATCCAGGTTCTCCACAGTGTCCTCAACGTGGTGCTGTGGGTCGGTGCTCGGGTACCTCACGCGGCCCTACTCCACGTCCTGCTGGTGGAATGCCTGTGTGGCCCACCACTCAGCACCCTCCACCCCACTAGCCCCCTGCTTCTGCAGCTCCCTGAACTGCAGGGCTCCAGCGATGCCAAACAGCACACTCACATCCTGCCACATGGCGCTGGTCTCCACCGACAGGTTGGTGGGCAAGATGGGCATGGCAGAGCCCTGGGCCAGGCACAGTCCTGTGCTGTGGTGGATCTGTATGGCCAGCTGGACAGCCACCACCTTCAGCGTGGCCGAGGTGGGGGTGGCCTGCAGTCCATCACTGATCCAGAAAGTCAAGTGCTGTGCAGGGCCACCGCGGTGGTCATAGACTAGGCTGCCGGTCTCCAACTCCCAGGAGGAGAATTCGGTCACCAGCTCCCCAGGCTGCTCCACGGTCTCAGTGCTCCATGGGGAGGCCAGAGGGGGCGCCAAGGAGCTAGAAGGCGAGGCCCTCACAGGCAGAGTCCGGGTCATAGGCCTGGAAAACCTCAGGTCCCAGTGGCTTCTGCATGTGTTCCAGGAACACCATGAGGCTGCCACGTGGGAAGATGATGCCACGTGGGTCACTGACAGGGTGAACCTGGAAGGGCAGAAGGTCATTTTGGCCCTTCCGTAAGCATGAGGGCATGGGCACCAGAGCCATCACTGACACCTCTAGCACCAGCTGGTCAGAGCTGTCCTCAGGGCCATCATGGATGAAGCAGGCCTTGCGGTTCACCATGTCCAGGAGGGTGAACATATTTCATGCCTGGGCACCCGGGATGTCCAGTTCTACCTCACCCTAGCATGCCCCTCAGGTCACGCTGAA-----------------CAGCACCTGGGATGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3796630 3200 -   4111199 TGGGCCATCCACAAGAGGC--TAAATCACCCccaaactcacactcccg-ttctgtgcctttgcccggaatgtctcttttgcctggaataccactccccatactctgctcccaatggcctgtgctcttcagagcccggcccaaacactgcctcctcccatg--aggccttcctgatttcctgataccagatctgctggcttgccatgggccccAAGCTCCAGACATG-------CAGAAGGGTCTCCGAAATAAGCAGTGTAGAAGAGTAAGGCCAAGAGCGGGCAA-GAAATGGCCTGAGGTCACAGGGCATGTC-------AGTGAGCTCGCTGGAGGGCCCGTGGCTGCTCTGTGGGGTTCCTGGGTGGGCAGAAGCCCTTGACAGACCCTCCTAGTCCTGGTCTGGGCTCCGAGAAGAGAGCGGGATACACGGGGGTCTGAGGCGCAGT--GGCCTGTCTCCATGGCcagcaatccccaaagttcaggacccgtga-gctctcccagggaac----tcactgcaatgcagattcttgggcttcacttcagagattctgtacggct--gggtggggtccaggaatctgCCTGCTCAGCCATGCCATGGACACGAGTGGACACGACCTCTAGAGGCACACCCAACTCCCAGGAGGATGGGTGTACAGCAGGCTCCCCAAAAACTCTTGGGAACACAACATACACAGGAGCACATCTGAGACACGTGCACACACACAA-CCT-GGGACCACCACAGCCACAGCCCAAGT-CACATGTGTACCTGGCATGGAGGCTGGG--------CGGGAGG---CCCTCTACCTGGTCCACT-ACCCCGCTCACCA--------------CCTCCAGCTGGTCCCTTGTGATCTCAGCTGCCTCTCCCTGGAAGATGTAGATCTTCTTGTGCCGGGCCAGCTTCAGTGGGGCTAGTGGGCCCTCTAGGGCAACAGTCACTTGTAGTGTGGCATGTGTGTGCACTGGCCCTGCTTCCATTGAGAAGGCCAGGGTGCTGTGGGGTCTGAGGCTGCCATTGTGGCCGTAGAGAACGGCCCCATTCAGCAAGTGCTGCTGGGAGACGACTGTGGCTGGTTGAGTGGCCCGGGGCAATTGTCCCTAGCGAGGACACTCTGTGACGTGGTAGTGGACCTCATCCCCTCTGCGGATGTCAAGGTTGGTGTCCAGGTGGAGCTCAGCCATGTTGATGGTACCCTGGCCTCTTTGAGGGACCATGAGGCCACAGCCATTGGCCACACAGAGGTAGGGCTCCAAGGCCTGCACCTCCAGCAGAGTGGTGGCCTGGTGCTGCCCATCAG--ACACCTGCAGCTGGATCCAG-CATGGTCAG--CCTGAGTACGCAAACAGGACTCACCTCTTCCTGAGGCCCCACATGGATGAAGCAGTAGATGAGTTGCATGGGCTCATCCACGGCCATGATACTGCCAAAGAGGAGGTCCTTGTGGGTCAGCACCAGCTGGGCATCAGCAAAGCCCAAATCAGCACTGCTGAAGGCCACGTCGACTGTAGTCAGCAGCCGCCACCTACCCCGGGCCACATGGAAGACGTGGCTGATGATCTGCAT-GGGGCGTGGTCATTCACGGGCTGGATGACCACTTGGAAGACACCCTGTACCTCCTCCCAGGCCATGTCACCACTGCTCTCATCCTGGCGGGTAGCAACAAATGGGATATCACCTTCTGTGATCTCAGAATCATCATGCTGGTAGACCAGCCGGCCACACAACAGGTCTCCATTGGTGAAGGATGTCACCATAGTAGTCTTGTCCTGTGTCCCATGCCAAGTCAACCTCCCATGGCGGGAGCCACTCCATGACCTTATAGAGGTACCTGGCACTGTTGAGACTCTGG---AAGAGCTGGTCAGTAGAGAGGACACCCTCATCATCCTCAGCCACCAC---GAGGACATTGGTGAGGACAGGCATGTCTGGGTCACCGCCAGTATGGATGGAGAAGGTACAGAGCAGGGAGAAATATGGTGGAGCTGTGACACAGAAACAGAAGGTGTCCTCCACTGCCACTGAGGTGCGTGCCGTGGCCCCACAGGTCACCTGGCCAGCCTGTACATCATCCTGGGTAAAGCCCTGGCCGCCTGAGAGCCTCGTGCCCTGTAGTTGAA-GCTGCCTTTCCTGGGAGCCTGAACCACCTCACAGTGGAAGGTTGGAGGGCTTGGGCCTGCC------------TCCTCCAGAGTGGCCTCCAGGTGGGCTGTGGTGAGGGTGTCCTGCTCGGTGTCCTGAGTGTGCAGTGGCTCCAGCTGCAGCATCCACACTGTGGCTCTCTGGATGGTCACTGAGAAGGGTAGATTGCTCAGGATTTCCCAGCCCACCTGCACCTCCAGATCCAGGTTCTCCACGGTGTCCTCGACGTGGTGCTGTGGGTCGGTGCTCAGGTACCTCACGCGGCCCTACTCCACATCCTGCTGGTGGAATGCCTGTGTGGCCCACCACTCAGCACCCTCCACCCCACTAGCCCCCTGCTTCTGCAGCTCCCTGAACTACAGGGCTCCAGCGATGCGGAACAGCACACTCACATCCTGCCACACGGCGCTGCTCTCCACCGACAGGTTGGTGGGTAAGATGGGCATGGCAGAGCCCGGGGCCAGGCACAGTCCTGTGCTGTGGTGGATCTGTATGGGCAGCTGGACAGCCACCACCTTCAGCAGGGCCGG---GTGGTGGGGGTGCAGTCCATCGCTGATCCAGAAAGTCAAGTGCTGTGCAGGGCCTCCACAGCGGTCATAGACTAGGCTGCCGGCCTCCAACTCCCGGCAGGAGAACTCGGTCACCGGCTCCCCAGGCTGCTCCACGGTCTCAGTGTTCCACAGGGAGGCCAGAGGGGGTACCAAGGAGCTAGAAGGAGAGGCTCTCACAGGCAGAGTCCAGGTCATAGGCCTGGAAAACCTCAGGCCCCAGTGGCTTCTGTGTGTGTTCCAGGAACACCATGAGGCTGCCACGTGGGAAGATGATGCTGGGTGGGTCACTGACAGGGTGAACCTGGAAGGGCAGGAGGTCATTTTGGCCCCTCCGTAGGCATGAGGGCATGGGCACCAGAGCCGTCACAGACACCTCTAGCACCAGCTGGTCAGAGGTGTCCTCAGGGCCATCGTGGATGAAGCAGGCCTTGCAATTCACCATGTCCAGGAGGGTGAACATTTTTCATGCCTGGGCACCCGGGATGTCCAGTTCAAGCTCGCCCTAGCATGCCCCTCAGGTCACGCTGAA-----------------CAGCACCTGGGATGT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             393755 3157 -   3282555 tgggtcagccacaagaggc--cgaactaccccaaa---cacgttccta-ctctgtgcctttgcccggaatgttccttctgcctggaataccacttcccattctctgct-cagacggcctgtgctcttcagagctcggcccaaacgctgcctcatcccacg--agccc--------atcctgatgccagatctgctggct-gccgtccGCCCCAAGCTCCAGAT----------------GA-------------CAGTGTAGGACAGTGAGGCCGCGGGCGGGCAG-GGACCGGCCTGAGGTCACAGCGCAAGTT--------GTGAGCCCTCTGGAGGGCCCGTGGCTGCTCTGTGGGGTTCCTGGGTGGGCAGAAGCCCTTGATAGACCCTCCCAGAGCCAGTCTGGGCTCTGAGAAAAGAGCGGGGGACATGAGGGTCTGAGGGGCAGC--GGCCTGTCTCCACGGTCAGCAATCCCCAAAGCTCAGGACCC-TGATACCTTCccaggaa--------actgcagtgcagattcttgggctccacctcagagattctgtggggctggggggggggcccaggaatctgCACGCTCAGCCACGCCAT-------------CACGACCTCTGGAGGCACACACAACTCCCAGGAGGATGGG-GTACAGCAAGCTCCCCAGAAAGTCTTAGGAACACAACACAGACGGGAGCACATGTGAGGCCCGTGCACACATGCAA-CCT-GGAGCCGCC------GCAGCCCAGGT-CATGCGTGTACCCGGCACTGAGGCTGGG--------AGGAAGG----CCTCTATCTGGCCCACG-CCCCCGCTCACCGCCCCCAGCTTCTCACCTCCAGCTGGTCCCTTCTGATCTCAGCTGCCTCTCCCTGGAAGACGTAGATCTTCCTGTGCTGGACCAGCTTCAGTGGGGCCAGTGGGCTCTCCAGGGCAATGGTCACTTGTAGGGTGGCATCTGTGTGCACTGGCCCCGCTTCCACGGAGAAGGCCAGGGTGTCTCGGGGGCTGAGGCTGCCATTGTGGCTGTAGAGAATGGCCCCATCCAGCAGGTCCTGCTGGGAGAAGGCCGTGGCTGGCTGACCGGCCCGGAGCAGCTGTCCCCAGCGAGGGCCGGCTGTGACGTGGTAGTGGACCTCATCCCCATTGCGGATGTCGAGATTGGTGTCCAGGTGGAGCACGGCCGTGTCGATGGTGCCCTGGCCTCCTTGAGGGACCACGAGGCTGGAGCCGTTGGCCACACGGAGGTAGGGCTCTGAGGCCTGCACCTCCAGCAGCGCGGTGGCCTGGTGCTGCCCGTCGG--ACACCTGCAGCTGGATCCAGCCTCGGTCAGCCCCCGAGTGCACGAACAGGACTCGCCTCTTCCTGAGGT-CCTCCTGGGTGAAGCGGTAGATGGGCCGCGTGGGCTCATCCACGGCCACGATACTGCCAAAGAGGAGGTCTTTGCGGGTCAGCACCAGCTGGGCGTCAGCAAAGCCCGAGTCAGCGTCGCTGAAGGCCACGTCGTCAGTCGTCAGCAGCCGCCGCCCACCCCGGGCCACATGGAAGACGCGGCTGATGGTCTGCACAGGGGCGTGGTCATTCACGGGCTGGATGGCCACTCTGAAGACACCCCGCACCTCCTCCCAGGCCATGTCACCACTGCTCTCGCCCTGGCGGGTAGCAACAAATGGGATATCGTCTTCTGTGGTCTCGGAGTCATCATGCTGGTAGACCAGCCGGCCACGCAACAGATCTTCATTGGTGAAGGATGTCACCATAGTGGTCTTGTCCTGTGTCCCACGCCAAGCCAACCTCCCGTGGC-GGGGCCGCTCCATGACCTCATAGAGGTAGCTGGCACTGTTGAGACTCTTGACGAAGAGGTGGTCAGCAGAGAGGACACCCTCACCACCCTCAGGCACAACAAGGAGGACGTTGGTGAGGACGGGCGCGTCCGGGTCGCCGCCGATGTGGATGGGGAAGGTATAGAGAGGGGAGAAATATGGTGGGGCTGTGACACGGAAACGGAAGGTGTCCTCGACTGCCTCCGAGACGCGTGCCGTGGCCGCATAGGTCACCCGGCCAGCCTGCAGGTCGTCCTGGGTGAAGCCCTGTCCGTCTGACAGCCTCGTGCCCTGTAGCTGAAGGTTGCCTTTCCTGGGAGCCTGAACTACCTCGTAGTGGAAGGTTGGGGGGCTTGGGCCTGCC------------TCCTCCAGGGTGGCCTCCAGGTGGGCCGTGGTGAGGGCCTCCTGCTGGGTGTTCTGAGTGTGCAGTGGCTCCAGCCGCAGCATCCACACCGTGGCTCTCTGGATGGTCACTGGGAAGGAGAGATTGCTCAGGATCTCCTGGCCCACCTGCACCTCCAGGGCCAGATTCTCCACGGTGTCCTCAGCGCGGTGCCGCGGGTCGGTGCTCAGGTACCTCACGCGGCCCTGCTCCACGTCCCGCTGGTGGAAAGCCTGCGTGGCCCACCACTCGGCACCCTCCACCCCACCTGCGCCCTGCTTCTGCAGCTCCCCGAATTGCAGGGCTCCGGGGACGCGGAACAGCACGCTCACATCCTGCCCCACGGCGTTGGTCTCCACTGACAGGTTGGCGGGCAAGATGGGCATGGCGGAGCCCTGGGCCAGGCGCAGCCCCGTGCTGCGGCGGACCTGTATAGCCGGTCGGACGGCCACCACCTTCAGTGTGGCGGG---GGGGCTGGCCTGCAGTCCGTCACTGACCCAGAACGTCAAGTCCTGGGCTGGGCCACCGTGGTGGACATACACTAGGTTCCCGTCCTCCAACTCGCGGCAGGAGAACTCGGTCGCCGGCTCCCCAGGCT-------GGTCTCGGCGCTCCACGGGGCGGCCCGAGGGGGCACCAAGGAGCTGGAAGGTGAGGCCCTCGCAGGCAGAGTCCGGGTCATAGGCCCGGAACACCTCGGGCCCCAGCGGCTTCTGCGTGTGTTCCAGGATCACCATGAGGCTGCCGTGTGGGAAGATGATGCGGGGCGGGTCGTTGACAGGGTTGACCTGGATGGGCAGGAGGTACGTTTGGCCCCTCCGCAGGCACGAGGGCATGGGCACCCGAGCCGTCACTGACACCTCCAGCACCAGCTGGTCGGAGGTGTCCTCCGAGCCGTCGTGGATGAAGCGGGCCTTGCGGTTCACCACGTCCAGGAGGGTGAACGTTTTTCGTGCCTGAGCGCCCGGGATGTCCAGCTCGAGCTCGCCGTGACGCGCCCCTCGGGTCACACTGAG-----------------CAGCACCTGAGACTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       183218 3170 -   1024465 GGGGTcagccacaagaggc--taaactaccccaaa---cacattcctg-ctctgtgcctttgcccggaatgttctttctgcctggaataccacttcccattctctgct-cagacggcctgtgttcttcagagctcggcccaaacgctgcctcatcccgcg--agccc--------atcctgacgccagaactgctggct-gccatccGCCCCAAGCTCCAGACGTACAG-A-CCAG-AGGA-------------CAGTGCAGGAGCGTGAGGCCGAGAGCGGGCAG-GGACCGGCCTGAGGTCACAGCGCAAGTT--------GTGAGCCCGCTGGAGGGCCCGTGGCTGCTCTATGGGGTTCCCGGGTGGGCAGAAGCCCTTGATAGACCCTCCTAGAGCCAGTCCGGGCTCTGAGAAAAGAGCGGGGGACACGGGGGTCTGAAGGGCAGC--GGCCTGTCTCCACGGTCAGCCATCCCCAAAGCTCAGGACCTGTGATACCTTCccaggaaac----tgactgcaatgcagattctcgggctccacctcagagattctgtggggct---gggggggcccaggaatctgcgtGCTCAGCCATGCCAT-------------CACAACCTCTGGAGGCACACACAACTCCCAGGAAGATGGG-GTACAGCAAGCTCCCCAGAAAGTCTTAGGAACACAACATAGATGGGAGCACATCTGAGGCCCGTGCACACAT-CAA-CCT-GGAGCCGCC------ACAGCCCAGGT-CGTGCGTGTACCCGGCATGGAGGCTGGG--------AGGAAGG----CCTCTACCTGGCCCACA-CCCCC-CTCACCACCCCCAGCTCCTCACCTCCAGCTGGTCCCTTCTGATCTCAGCTGCCTCTCCCTGGAAGACGTAGATCTTCTTGTGCTGGACCAGCTTCAGTGGGGCCGGTGGGCTCTCCAGGGCAATGGTCACTTGTAGGATGGCATCCGTGTGCACTGGCCCCGCTTCCACAGAGAAGGCCAGGGTGTCTCGGGGGCTGAGGCTGCCATTGTGGCTATAGAGAATGGCCCCATCCAGCAGGTCCTGCTGGGAGAAGGCTGTGGCTGGCTGACCAGCCCGGAGCAGCTGTCCCCAGCGAGGGCCGGTTGTGACGTGGTAGTGGACCTCATCCCCATTGCGGATGTCGAGGTTGGTGTCCAGGTGGAGCACGGCCGTGTCGATGGTGCCCTGGCCTCCTTGAGGGACCACAAGGCCGGAGCTGTTGGCCACACGGAGGTAGGGCTCTGAGGCCTGCACCTCCAGCAGCGCGGTGGCCTGGTGCTGCCCGTCGG--ACACCTGCAGCTGGATCCAGCCTCGGTCAGCCCCTGAGTGCACGAACAGGACGCGCCTCTTCCTGAGGT-CCTCCTGGGTGAAACGGTAGATGGGCCGCGTGGGCTCATCCACGGCCACGATACTGCCAAAGAGGAGGTCTTTGCGGGTCAGCACCAGCTGGGCGTCAGCAAAGCCCGAGTCAGCGTCGCTGAAGGCCACGTCATCAGTCGTCAGCAGCCGCCGCCCACCCCGGGCCACATGGAAGATGCGGCTGATGGTCTGCACAGGGGCATGGTCATTCACGGGCTGGATGGCCACTCTGAAGACACCCCGGACCTCCTCCCAGGCCATGTCACCACTGCTCTCGCCCTGGCGGGTAGCAACAAATGGGATATCATCTTCTGTGGTCTCAGAGTCATCATGCTGGTAGACCAGCCGGCCACGCAACAGATCTTCATTGGTGAAGGATGTCACCATAGTGGTCTTGTCCTGTGTCCCACGCCAAGCCAACCTCCCATGGC-GGGGCCGCTCCATGACCTCATAGAGGTAGCTGGCACTGTTGAGACTCTTGACGAAGAGGTGGTCAGCAGAGAGGACACCCTCACCACCCTCAGGCACCACAAGGAGGACGTTGGTGAGGACGGGCGCGTCTGGGTCACCGCCGATGTGGATGGGGAAGGTATAGAGCGGGGAGAAATATGGTGGAGCTGTGACACGGAAACGGAAGGTGTCCTCGACTGCCTCTGAGGCACGTGCCGTGGCCGCATAGGTCACCCGGCCAGCCTGTAGGTCGTCCTGGGTGAAGCCCTGCCCGTCTGACAGCCTCATGCCCTTTAGTTGAAGGTTGCCTTTCCTGGGAGCCTGAACTACCTCATAGTGGAAGGTCGGGGGGCTTGGGCCTGCC------------TCCTCTAGGGTGGCCTCCAGGTGGGCTGTGGTGAGGGCCTCCTGCTGGGTGTTCTGAGTGTGCAGTGGCTCCAGCCGCAGCATCCACACCGTGGCTCTCTGGATGGTCACTGGGAAGGACAGATTGCTCAGGATCTCCTGGCCCACCTGCACCTCCAGGGCCAGGTTCTCTACGGTGTCCTCAGCGTGGTGCTCTGGGTCGGTGCTCAGGTACCTCACGCGGCCCTGCTCCACGTCCCGCTGGTGGAACGCCTGCGTGGCCCACCACTCAGCACCCTCCACCCCACCTGCGCCCTGCTTCTGCAGCTCCCCGAACTGCAGGGCTCCGGGGACGCGGAACAGCACGCTCACATCCTGCCCCACGGCGTTGGTCTCCACTGACAGGTTGGCAGGCAAGATGGGCATGGCGGAGCCCTGGGCCAGGCGCAGCCCTGTGCTGCGGCGGATCTGTATAGCCGGTCGGACAGCCACCACCTTCAGTGTGGCTGG---GGGGCTGGCCTGCAGTCCGTCACTGACCCGGAACGTCAAGTCCTGTGCTGGGCCACTGCGGTGGACATACACTAGGTTCCCGTCCTCCAACTCCCGGCAGGAGAACTCAGTCGCCGGCTCCCCAGGCT-------GGTCTCGGCGCTCCACGGGGAGACCCGAGGGGGTACCAAGGAGCTGGAAGGTGAGGCCCTCGCAGGCAGAGTCCGGGTCATAGGCCTGGAAAACCTCGGGCCCCAGCGGCTTCTGCGTGTGTTCCAGGATCACCATGAGGCTGCCATGTGGGAAGATGATGCGGGGCGGGTCGTTGACAGGGTTGACCTGGATGGGCAAGAGGTAAGTTTGGCCCCTCCGCAGGCACGAGGGCATGGGCACCCGAGCCGTCACTGACACCTCTATCACCAGCTGGTCGGAGGTGTCCTCAGAGCCGTCGTGGATGAAGCGGGCCTTGCGGTTCACCACGTCCAGGAGGGTGAACATTTTTCGTGCGTGAGCGCCCGGAATGTCCAGCTCAAGCTCGCCGTGGCGTGCTCCTCGGGTCACACTGAA-----------------CAGCACCTGAGACTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       984524 3166 +   3745603 tgggtcagccacaagaggc--taaactaccccaaa---cacattcctg-ctctgtgcctttgcccggaacgttccttctgcctggaataccacttcccatactctgct-cagacggcctgtgctcttcagagcttggcccaaacgctgcctcatcccgcg--agccc--------aacctgcggccagaactgctggct-gccatccGCCCCAAGCTCCAGACGTGCAG-A-CCAGAAAGA-------------GAGCTTAGGAGAGTGAGGCCGCGAGCGGGCAG-GGACCAGCCTGAGGTCACAGCGCAAGTT--------GTGAGCCTGCTGGAGGGCCCGTGGCTGCTCTGTGGGGTTCCCGGGTGGGCAGAAGCCCTTGATAGACCCTCCTGGACCCAGTCTGGGCTCTGAGAAAAGAGCGGGGAACATGGGGGTCTGAAGGGCAGC--GGCCTGTCTCCACGGTcagcaatgcccaaagctcaggacccatgatgccttcccaggaaac----tgactgcaatgcagattctcgggctccacctcagagattctgtggggct----ggggggcccaggaatctgcatGCTCAGCCACGCCAT-------------CATGACCTCTG------CACACAACTTCCAGGAGGATGGG-GTACAGCAAGCTCCCCAGAAAGTCTTAGGAACACAACATAGACGGGAGCACATCTGAGACCTGTGCACACATGCAA-CCT-GGAGCCGCC------ACAGCCCAGGT-CATGTGTGTACCCGGCATGGAGGCTGGG--------AGGAAGG----CCTCTACCTGGCCCACA-CCCCCGCTCACCGCCCCCAGCTCCTCACCTCCAGCTGGTCCCTTCTGATCTCAGCTGCCTCTCCCTGGAAGACGTAGATCTTCTTGTGCCGGACCAGCTTCAGTGGGGCCAGTGGGCTCTCCAGGGCAATGGTCACTTGTAGGGTGGCATCCGTGTGCACTGGCCCCCCTTCCACGGAGAAGGCCAGGGTGTCTCGGGGGCTGAAGCTGCCATTGTGGCTATAGAGAATGGCCCCGTCCAGCAGGTCCTGCTGGGAGAAGGTTGTGGCTGGCTGACCGGCCCGGAGCAGCTGTCCCCAGCGAGGGCCGACTGTGACGTGGTAGTGGACCTCATCCCCACTGCGGATGTCGAGGTTGGTGTCCAGGTGGAGCACGGCCGTGTCAATGGTGCCCTGGCCTCCTTGAGGGACCATGAGGCTGGAGCCGTTGGCCACACGGAGGTAGGGCTCTGAGGCCTGCACCTCCAGCAGCGCGGTGGCCTGGTGTTGCCCGTCGG--ACACCTGCAGCTGGATCCAGCCGCGGTCGGCCCCTGAGTGCACGAACAGGACTCGCCTCTTCCTGAGGT-CCTCCTGGGTGAAGCGGTAGATGGGCCGCGTGGGTTCATCCACAGCCACAATACTGCCAAAGAGGAGGTCCTTGCGGGTCAGCACCAGCTGGGCGTCAGCAAAGCCCGAGTCAGCGTCGCTGAAGGCCACGTCATCAGTCGTCAGCAGCCTCCGCCCACCCCGGGCCACATGGAAGACACGGCTGATGGTCTGCACAGGGGCGTGGTCATTCACGGGCTGGATGGCCACTCTGAAGACACCCCGTACCTCCTCCCAGGCCATGTCACCACTGCTCTCGCCCTGGCGGGTAGCAACAAATGGGATATCATCTTCTGTGGTCTCGGAGTCATCATGCTGGTAGACCAGCCGGCCATGCAACAGATCTTCATTGGTGAAGGATGTCACCATAGTGGTCTTGTCCTGTGTCCCACGCCAAGCCAACCTCCCATGGC-GGGGCCGCTCCATGACCTCATAGAGGTAGCTGGCACTGTTGAGACTCTTGACAAAGAGGTGGTCAGCAGAGAGGACACCCTCACCACCCTCAGGCACCACAAGGAGGACGTTGGTGAGGATGGGTGCGTCTGGGTCACCACCGATGTGGATGGGGAAGGTATAGAGCGGGGAGAAATATGGTGGAGCTGTGACACGGAAACGGAAGGTGTCCTCGACTGCCTCCGAGGCACGTGCCGTGGCCGCATAGGTCACCCGGCCAGCCTGTAGGTCGTCCTGGGTGAAACCCTGACCGTCTGACAGCCTCATGCCCTGTAGTTGAAGGTTGCCTTTCCTGGGAGCCTGAACCACCTCATAGTGGAAGGTTGGGGGGCTTGGGCCTGCC------------TCCTCCAGGGTGGCCTCCAGATGGGCTGTGGTGAGGGCCTCCTGCTGGGTGTTTTGAGTGTGCAGTGGCTCCAGCCGCAGCATCCACACAGTGGCTCTCTGGATGGTCACTGGGAAGGACAGATTGCTCAGGATCTCCTGGCCCACCTGCACCTCCAGGGCCAGGTTCTCCACGGTGTCCTCAGCGTGGTGCTGTGGGTCGGTGCTCAGGTACCTCACGCGGCCCTGCTCCACGTCGCGCTGGTGGAACGCCTGCGTGGCCCACCACTCAGCACCCTCCACCCCACCAGCACCCTGCTTCTGCAGCTCCCCGAACTGTAGGGCTCCGGGGACGCGGAACAGCACGCTCACATCCTGCCCCACGGCATTGGTCTCCACGGACAGGTTGGAGGGCAAGATGGGCATGGCGGAGCCCTGGGCCAGGTGCAGCCCTGTGCTGCGGCGGATCTGTATAGCCGGTCGGACAGCCACCACCTTCAGTGTGGCTGG---GGGGCTGGCCTGCAGTCCATCACTGACCCGGAACGTCAGGTCCTGTGCTGGGCCACTGTGGTGGACATACACCAGGTTCCCGTCCTCCAACTCCCGGCAGGAGAACTCGGTTGCCAGCTCCCCAGGCT-------GGTCTCGGCGCTCCACGGGGAGACCCAAGGGAGCACCAAGGAGCTGGAAGGTGAGGCCCTCGCAGGCAGAGTCTGGGTCATAGGCCTGGAAAACCTCGGGCCCCAGCGGCTTCTGTGTGTGTTCCAGGATCACCATGAGACTGCCATGTGGGAAGATGATGCGGGGCGGGTCATTGACAGGGTTGACCTGGATGGGCAGGAGGTAAGTTTGACCCCTCCGCAGACACGAGGGCATGGGCACCCGAGCCGTCACTGACACCTCCAGCACCAGCTGGTCGGAGGTGTCCTCAGAGCCGTCGTGGATGAAGCGGACCTTGCGGTTCACCACGTCCAGGAGGGTGAACATTTTTCGTGCCTGAGCGCCCGGGATGTCCAGCTCGAGCTCGCCGTGACGTGCTCCTCGGGTCACACTGAA-----------------CAGCACCTGAGACTT
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67705665 3068 - 124595110 tggaactctcttaatagac--caggttggccttgaattca--------------------------aagagctctgcctgcct------ctgcctcctgagtgctgggattaaaggtgtgcac-caccaaagcttggttCATATGCTGCCTCCTCTGGTG--TGGAC------ACTTCCTGACA-------TGTTTAGTCATGGTCTTTCTCAAAGTCCAAACACTCAGAA-CTGGAAGGGCCTCAAAACTG----------------------------------------GGCCT----TCACA--GTAAGGC-------AGTGAGCCAGCTGGTCAGC-----ATTGCGCTGTGAGCTCCCTGAGTTAACAGACACCATC-ACAGGCCCTCACAGTTCTGTTGTGGAGTCTAGGGAAAGAGCTAAGGACCTGTGGATCTGAGGGGCAGC--G---------------------CTCCTAAAGGTCACCCCTCATGGTAACCTCATAGGGACTG---TGACAG-GATATACACTCTTGGTCTCTGCTTCAGAGATTCTGTGGATCT--GGCTGGAACCCA-GATTTTACACGGCTATCCATAGCAAGGACACATGTATATGTGATCTCTGGAGG--TGCGTGACACTTAACAGG-TAGGTGTATG------TTCCTAGACACATGCAGAACTACAACACATACAGGTG-ACTACTGAAGCTGTAATACTCCTAAGA-CCT-GCATCC-CCACAGGAAC-----------------GCCCCCCTCATGGAAGT------------------A---CCCTCAGCTTGGCAGG----CCTCGTGCACTG---------CCTTACCTCTAGCTGGTCCCTTCTGATCTCAGCCGCTTCCCCCTGGAAGACGTAGATCTTTTTGTGCTGCACCAGTTGCAGTGGGGCCAGGGGACCCTCGAGGGCAATGGTCACTTGTAGGAAGGTGTTAGTGTGTACTGGCCCTGCTGCCACAGAAAACGCCAGGGTGTCTTGGGGGCTGAGGCTGCCATTGTGGCTGTAGAGGATGGCCCCATCGAGCAAGTCCCGTTGGGAGAAGGAGGTGACTGACTGGCCATCCCGGAGCAGCTGCCCCCACTGAGGACCAGCGGTTACATGGTAGTGGACCTCATTTCCACTTCGTATGTCCAGGTTGGTGTCCAGCTGGAGCACAGCAGTGTCAATGGTGCCCTGGCCTCCTTGAGGAACCACGAGACTAGAACTATTGGCTACGTGAAGATAGGGTTCTGAGGCTTGGACCTCCAGCATGGCAGTAGCCTGGTGCTGCCCATCAG--ACACCTGCAGCTGGAGCCAGCCGTGGTCGGCCCCCGAGTGCACAAACAGGACTTGCTTCTTCCTGAGAT-CCTCTTGGGTGAACCGGTAGATGGGCCTCGTGGGCTCCTCCATAGCCACAATGCTGCCAAAGAGGAGGTCCTTGCGGGTCAGCACCAGTTGCGCATCACTGAACCCTGAATCAGCATCGCTGAAGGCTACATCATCTGTAGTCAGCAGTCGCTGTCCACCCCGGGCCACGTGGAAGACACGGCTAATGGTCTGCACAGGGGCGTGGTCATTCACAGGCTGGATGGCCACTCGGAAGACACCACGCACCTCCTCCCAGGCCATGTCACCACTGCCCTCTCCCTGGCGTGTGGCCACAAACGGGATATCATCCTCTATGGTCTCAGAGTCATCGTGCTGGTAGACCAGTCGGCCATGAAGTAGGTCCTCATTAGTGAAGGATGTCACTGGGGTGGACTTCCCCTTTGGGTCCCTCCAAGCCAACTTGCCATGGT-GAGGCTGCTCCATCACCTCATAGAGATAGCTGGCGCTGTTGAGACTCTTGACGAAGAGGTGGTCGGCAGACAGCACGCCCTCCCCTCCCTCGGGGACCATGAGAAGGACGTTAGTGAGGACGGGAGCATTTGGGTCACCACCAATGTGGATGGGGAATGTGTAGAGCGGGGAGAAATGGGGTGGGGATGTGACCCGGAAACGGAAGGAGTCATCGGCTGCCTCAGAGGTCCGCATTGTGGCCCTGTAGGTCACCCGACCGGCCTGCAGGTCACTCTGGCTGAAGCTCTCGCCGTCTGACAGCCTTGTACCCTGAAGCAGGAGGTTGCCTCTTCTGGGGGCCTGAACCAACTCATAGTGGAAGGTATGAGGTTGTGGGCTTCCCTCTTCCTCCTCTTCCTCCAGGGATGCCTCTAGGTGGGCTGGGGTGAGGGTCTCCTGATGAGGGTTCTGTGTATGCAGAGGTTCAAGCCTCAGCATCCATACTGTGGCCCTCTGGATGGTCACTGGGAAAGACAGATTGCTCAGTGTCTCCTGGCCCACCTGCACCTCTAAGATCAGGTCCTCCACTGTGTCTTGGGTGTGGTGCTGTGGGTCAGTGCTCAGGTACCTCACTCGGCCTTGCTCCACATCGCGCTGGTGGAAGGCCAGTGTGTCCCACCACTCGGTGCCCTCGACCCCTCCGGCCCCCTGCTTCTGCAGCTCCCCGAATTGCAAGGTACCAGTGACTCGGAACAGCACGCTCACATCCTGTCCCACCGCGTTCGTTTCTACTGACAGGTTGGCAGGCAAGATGGCTGCGGCAGAGCCCTGGGCCAGGTGCAGCCCTGTGTTGTGGAGGATCTGTATGGCTGGCCGGACGGCCACTACCTTCAGTGTCGCTGG---AGCACTGGCCTGCATCCCATCACTGACCCGGAATGTTAGGTCCTGTGCAGGCCCACCACGGTGGACATAGACTATGTCGCCCACCTCCAGTTCCCGACAGGAAAACTCAGTTGCTGGCTCTCCTGGCT-------GGTCTCGGTGTTCCACAGGGACACCAGAGGAGACGCCAAGGAGCTGGAAGGTGAGACCCTCACAGGCAGAGTCCGGGTCGTAGGCCTGGAAAATCTCCGGTCCCAGAGGCTTCTGTGTGTGTTCCAGGATCACCATGAGGCTGCCGTGGGGGAAGATGATGCGAGGTGGATCGTTGACAGGATTGACCTGGATGGGCAGGATGTAAATTTGGCCCCTCCGCAGGCAGGAGGGCACAGGTGCCCGAGCAGTCACAGACACCTCCAGCATCAGCTGGTCAGAGGTGTCTTCAGAGCCATCGTGAACAAAGCGGGCCTTACGGTTCACCACGTCCAACAGGGTAAACATTTTCCGGGTTTGGGCTCCCAGGATGTCTAGCTCCAGGTCACCATGTCGTGCACTCTGGCTCACGCTGAA-----------------CAGCACCTGGGACTT
i mm10.chr9                 I 537 C 0
s canFam3.chr30              38474792 2990 +  40214260 TGGCCCGGCTGCAGGAGGCCACACACCACCCCCAG-CTCACATCCCTGATCCTGTGCCTCTGCCTGGAGGGGTGTCCTT-----------------TCATCCCCTGCTACTGAAACCCCAGACTCTGCAAAGCCGGACTCCAGTGCCGCCTCCGTCAAGGCCAAGCC--------TTTCTGATGCCAGACAGGGCCAGCCACCGTCTGCCCCAAA-TCCAGGCAGCTGG-ACCCACCAGGGGCTCAGAAATCGGCCGTGT----------------------------------------GCCAC----CGAGTC-------AGTAGGCCT--------------GGTTGCTCTCTGA--TTCCTGGATGGTCAGCGGCTCTCCCCAGGTC-------------------------------------------------CTGAGGCCCGG-------------------------TCCTCAAGGT-----GCCCAGGAGAATCCCCCAGGGAACGAATTTATTAGAAAACAGATTCTCCGAATCCG--------------------T--AG---------------------------------CACGCACATGTGTGCACCTGACAGGTGGAGGCCCCCATAACTCTGAG---------------GCAAACTCCCCGGAGACCGTCAGGCAC-----------------ATCCCCAAAGCGCGGACAC-CACCCAA-CCCAGGAGTCCCCACCGGTACCCCCCAAACGTCCACGCACACAGGGCGTGAAGGCTGGA--------TGGAAGGGGCCCCCTTCTCTGGCCTATGACTTCCACTCGCC--CCTCGGCCTTTTACCTCCAGCTGATCCTTTCTGATCTCAGCTGCCTCCCCCTGGAAGACGTAGATCTTCTTGTTCTGGACCAGATGCAGTGGGGCCAATGGCCCCTCCAAGGCAATGGTCACCTGCAGGGTGGCATCCGTGAGCACAGGCCCTGCCTCCACGGAGAAGGCCAGGGTGTCCTGCGGGCTCAGGCTGCCGTTGTGGCTGTAGAGGACGGCCCCGTCCAGCAGGTCCTGTTGGGAGAAGGCTGTGGCCGGCTGGCCGGCCCGGAGCAGCTGCCCCCAGTGCGGGCCGGCTGTGACACGGTAGCGGACCTCATCCCCGCTGCGAATGTCTAGGTTGGTGTCCAGGCGGAGCACGGCTGTGTCGATGGTGCCCTGGCCCCCCTGAGGGACCACGAGGCTGGAGCCATTGGCCACGCGGAGATAGGGCTCGGATGCCTGCACTTCAAGCAGCGCGGTGGCCTGGTGCCGCCCGTCGG--ACACCTGCAGCTGGATCCAGCCGCGGTCGGCCCCGGAGTGCACGAACAGGACGCGCCTCTTCCGGAGGT-CCTCCTGGGAGAAGCGGTAGATGGGCCGCGTGGGCTCGTCCGCGGCCACGATGCTGCCGAAGAGAAGGTCCTTGCGGGTCAGCACCAGCTGCGCGTCGGCGAAGCCGGAGTCGGCGTCACTGAAGGCCACGTCGTCGGTCGTCAGCAGCCGCCGCCCGCCCCGGGCCACGTGGAAGACGCGGCTGACGGTCTGCACGGGAGCGTGGTCGTTCACGGGCTGGATGGCCACGCGGAAGACGCCCCGGACCTCCTCCCAGGCCAGGCCGCCGCTGCCCTCACTCTGGCGGGTTGCCACGAAGGGGATGTCGTCTTCCGTGGTCTCGGAGTTGTCATGCTGGTAGACCAGCCGGCCCTGCAGCAGGTCCTCGTTGGTGAAGGACGTCACCGCGGTGGCCTCGTCCTGCGCCCCCCTCCAGACCAGCCGCCCGTGGC-GGGGCCGCTCCATGACCTCATAGAGGTAGCTGGCGCTGTTGAGGCTCTTGACGAACAGGTGTTCCGCGGAGAGGACGCCCTCGCCTCCCTCGGGCACGGAGAGGAGGACGTTGGTGAGGACGGGGGCGTCGGGGTCACCCCCGATGTGGATGGGGAAGGTGTAGAGCGGGGAGAAATGTGGCGGAGCCGTGACGCGGAAACGGAAGGCGTCCTCCACGGTCTCCGAGGTGCGCGCCGTGGCCCCGTAGGTCACCCGGCCGGCCTGCAGGTCATCCTGGGTGAAGCCCTGCCCCTCGGACAGCCGGGCGCCCTGCAGCCTGAGGTTACCCTTCCTGGGGGCCTGAACCAGCTCGTAGTGGAAGGTGGTGGGGCTGGGGCCCGCC---------CCCTCCTCCAGAGCGGCCTCCAGGTGCGCGCCGGTGAGCGCCTCCTGCCGCGTGGTGTGGGTGCGCAGGGGCTCGAGCCGCAGCAGCCGCACGGTGGCTCTCTGGATCGTCACCAGGAAGGACAGATTGCTCAGGGTCTCCTGGCCCACCTGAACCTCCAGGGCCACGCGCTCCACGGCGTCCTCCGTGCGGTGCTGCGGGTCGGTGCTCAGGTACCTCACGCGGCCCTGCTCCACGTCCCGCTGCTGGAAGGCCTGCACCGGGCGCCACTCCGCGCCCTCGGCGCCCCCCGCGCCCTGCTTCTGCAGCTCCCCGAACCGCAGGGCCGCGGCGACCCGGAACAGCACGCTCACATCCTGCCCCACCGCGTTGGTCTCCACCGACAGATTGGCGGGCAGCACCGGGGCGGCGGAGCCCTGGGCCAGGCGCAGCCCCGTGTTGTGGCGGACCCGGATGCTGGGCCGGACCGCCACCACCTGCAGCGTGGCCGG---AGCGCTGGCCTGCAGCCCGTCGCTGACGCGGAACGTCAGGTCCTGGGCGGGCCCGCTCCGGTGCACGTAGACCAGGCCGCCCGCCTCCAGCTCCCGGCAGGAGAACTCGGTGGCTGGCTCCCCGGGCT-------GCTCCTGGCGCTCCACCGGCAGGCCCGGGGCGGTGCCAAGGAGCTGGAAGGTGAGGCCCTCGCAGGCAGAGTCTGGGTCGTAGGCCTGGAAGACCTCGGGCCCCAGGGGCTTCTGTGTGTGTTCCAGGATCACCATGAGGCTGCCGTGGGGGAAGATGATTTGGGGTGGGTCGTTGACCGGGTTTATCTGGATGGGCAGGATGTAAGTCTGGCCCCTCCGGAGGCAGGAGGGCACAGGGCCCCTGGCGGTCACGGACACCTCCAGCATCAGCTGGTCGGAGGTCTCCTCCGAGCCATCGTGGACGAAGCGGGCCTTGCGGTTCACCACGTCCAGGAGGGTGAACATTTTCCGTGCCTGGGCTCCCGGGACGTCCAGCTCGAGCTCCCCGTGGCGGGCCCCACGGCTCACGCTGAA-----------------CAGCACCTGGGATTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             834586 3132 +   1040364 tgacccagccacga-aggctgcacaccagccccaaactcgcactcctggttctcagcctttg-cagggacagtccctttgcctggaataccaccccc---accctgctatcgaccccccagactcttcaaagct-ggctcaaatgctgcttcctct------ag--C--------ATTTTAGCCTCAG----------------TTTGCCCCAAAGTCCAGATAGCCAGAA-CCCAAAGGGCCTCAGAacttgacagtggaggagaataaggcccagagagggcaagggacagggctgtggccacacagcaggtc-------agtggGCCTGCTGGATGG--------------------TTCCTGGGTGGCCAGCAGCCCCT--------------------TTCTGAGGTCTGGGAA-AGAGCTGACTATCGGGAGGTGTGTGGGACAGCTGAGCCCGTCTCCGTGGCcagcagtcctcaaagcttagcacccacaacaatattctagtgaac----gtatttgagtacagagtcttaggctccacttcagagattccatgtgcct--gggtgg-gccctggaatctgcatGCTGAGCCACAGCACGTACACA---GGACAC-------AGAGTCACACACCCCTCACGGGCAAATGTG-TTACAACATACAGATCCGCATGTC------------CATGTTTAAGCTCACACCCAAGACATGTGCACACACCTGCTCCC-CGAGCAGCCATTGTCACAGCCCAGAA-CATA--------CGGCACGAAGGCCGGTGCCGGTGCAGACAGGGCCCCCTCTCCCTGGGCCATA-CCCCCGCACGTTACCCCCAGCCCCTTACCTCCAGCTGGTCCCTTCTGATCTCGGCCGCCTCCCCCTGGAAGACGTAGATCTTCTTGTGCTGGACCAGGCGCAGTGGGGCCAGCGGGCCTTCCAGGGCAAGGGTCACATGTAGGGTGGCATTTGTGTGCACGGGCCCGGCCTCCACGGAGAAGGCCAGGGTGTCGCGGGGGCTAAGGCTGCCGTTGTGGCTGTAGAGAACAGCCCCGTCCAGCAGATCCTGCTGGGAGAAGGCTCTGGCTGGCTGGCCGGCCCGGAGCAGCTGTCCCCAGCGCGGGCCGGCGGTGACGTGGTAGCTGACCTCGTCCCCGCTGCGGATGTCTAGGTTGGTGTCCAGGGGGAGCACGGCTGCATCGATGGTGCCCTGGCCCCCTTGAGCAACCACGAGGCTGGCGCCATCGGCCACGTGGAGGTAGGGCTCCGAGGCCTGCACCTCGAGCAGCGCAGTGGCCTGGTGCTGTCCGTCGG--AGACCTGCAGCTGGATCCAGCCACGGTCGGCGCCCGAGTGCACGAACAGGACCCGCCTCTTCCTGAGGT-CCTCCTGGGTGAAGCGGTAGATGGGCCGCGCGGGCTCGTCCACGGCCACGATGCTGCCGAACAGGAGGTCCTTGCGGGTCAGCACCAGCTGGTCGTCGGCGAAGCCCAGGTCGGCGTCGCTGAAGGCCACGTCATCGGTGGTCAGCAGCCGCTGCCCGCCGCGGACCACGTGGAAGACGCGGCTGACGGTCTGCACGGGGGCATGGTCGTTCACAGGCTGGATGGCCAGGCGGAAGACGCCGCGCACCTCCTCCCAGGCCATGCCGCCGCTGCCCTCGCCCTGGCGGGTCGCCACGAACGGGATGTCGTCCTCCGTGGTCTCGGAGCCGTCGTGCTGGTAGACCAGCCGGCCATCCAGCAGGTCCTCGTTGGTGAAGGAGGTCACCGTGGCGGTCTCGTCCCGTGCCCCTCGCCACGCCAACCTCCCGTGGC-GGGGCCTCTCCATGACCTCGTAGAGGTAGCTGGCGCTGTTGAGACTCTTGACGAAGAGGTGGTCAGCAGAGATGACGCCCTCGCCGCCCTCGGGCACCGAGAGGAGGACGTTGGTGAGGACAGGGGCGTCGGGGTCCCCGCTGATGTGGATGGGGAAGGTGTAGAGTGGGGAGAAGTGGGGCGGGGCCGAGACGCGGAAGCGGAAGGCATCCTCCGCCGCCTCCAAGGCTCGCGCCGTGGCCCCATAGGTCACCCGGCCGGCTTGCAGGTCGTCCTGGGTGAAGCCCTGGCCGTCGGACAACCGCATGCCTTGCAGCCGAAGGTTTCCCTTCCGGGGGGCCTGAACCACTTCGTAGTGGAAGGTGGCGGGGCTTGAGCCTGCC------------TCTTCCAGGGCGGCCTCCAGGTGGGCCGTGGTGAGAGCCTCCTGCCGGGTGTTGTGCGTGTGCAGAGGTTCCAGCCGCAGCATCCACACTGTGGCTCTCTGGACGGTCACTGGGAAGGAGAGGTTGCTCAGGGTCTCCTGGCCCACCTGCACCTCCAGAGCCAGGTTCTCCACGGTGTCCTCGATGTGGCGCTGCGGGTCCGTGCTCAGGAAGCGCACACGGCCCTGCTCCACGTCCCGCTGGTGGAAGGCCTGCACGGGCCACCACTCGGTGCCCTCTGCCCCGCCGGCCCCCTGCTTCTGCAGCTCCCCGAACCGCGGGGCGCCGGCGACGCGGAAAAGCACGCTCACGTCCTGCCCCACGGCGTTGGTCTCTACCGACAGGTTGGCGGGCGAGATGGGCGCAGCCGAGCCCTGGGCCAGGCGCAGCCCCGTGTTACGGCGGATCTGCATGGCCGGCCGGACAGCCACCACCTTCAGCGTGGCCGG---GGGGCTGGCCTGCAGCCCGTCGCTGACCCGGAACGTCAGGTCCTGCGCGGGGCCGCCGCGGTGGGTGTAGACCAGGCCGCCCGCCTCCAGCTCGCGGCAGGAGAACTCGGCCGCTGGCTCGCCGGGCT-------GCTCTGGGCGCTCCACGGGGAGGCCGGCAGGGGTGCCGAGGAGCTGGAAGGTGAGGCTCTCGCAGGCAGAGTCTGGGTCGTAAGCCTGGAAGACGTCGGGCCCCAGGGGCTTCTGCGTGTGCTCCAGGACGATCATGAGGCTGCCGTGGGGGAAGACGACGCGGGGCGGGTCATTGACGGGGTTCACCTGGATGGGCAGGATGTAAGTCTGGCCCCTCCGCAGGCACGAGGGCACGGACGCCCGAGCCGTCACCGACACCTCCAGCACCAGCTGGTCGGAGGTGGCCTCGGAGCCGTCGTGGACGAAGCGTGCCTTGCGGTTCACCACGTCCAGGAGGGTGAACATTTTCCGCACCTGGGCGCCTGGGATGTCCAGCTCGAGCTCGCCGTGGTGCGCCCCGCGGCTCACGCTGAA-----------------CAGCACCTGGGATTT
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=4164090.000000
s hg38.chr15_KI270850v1_alt    105659 833 +    430880 ACGCAGTTCAGCCTCCATCAGTGCCAGCATGGGCTGCACATGCCACCACTCAAGCCAGGCTGTGCCACCCTCGGTCACCACCACTGCGCTGATAG----CAGCTGGATGAAATTGGCAAAGACAGGAGGTAGCCCTGGCTCAGGCACGCATGGCTCAGCTAGCTCCACGGACAGCCAAGCCTTGGGAGCCAGGGTGGAGAAAGCTTCATAATGGCCATAGGCATTG------------TCTACCTCCTCCAGTCTGCAGCCAGCCACCATGTTGTGCGTCAGCAAGGCTTCCCACAGCCCCTGCCTCTAGCCATTGACACTGAGGTCTTCCATGCAGCCAGCCCAGCAGGGAGGCATTGGCAGCCCCTGGTGTCAGGCCTGAGCGGTGTTCCTGGAGGTGATGAGAGGCCTCTGCAACCAGCTCCCCAAGAAGGAGACTGTCACGTGGCTCCAGGTAGCTGAGGACTCCTCAGTT-------CGTGT-GGGGTACTGGTCCATGGAGATTTCTAGCTGGTGAATGTTGATGTGGATGCTGACCTTGTGGGGCTGTGCGTCAGTCACAGGCACACTGTTGAGGAGCAATACAGTACCCTGGCCCTTCTCAACCATGGACCACAGGTGGCCCTCAAATATGTCCACATGGATGAAGTCCCCATGCCAGCCTGCTGCCTGGAAGGCCAAGGGTGCCTGCCAGCTCTGTGTGGTGAGTGTAAACTCCAGGGTTCCTTCATCCTGAGTGCCCCAGGCAGGCAAGGCAGCCAGAGAGTGGGACCCAGAGAAGCCCAGGGCCACATCATCATTGGCAGAAAACTCTTCAGCACAGCCCTCATGCTTATTGGGGGTCAGAGGCTG
s panTro5.chr15              17342864 852 -  83230942 ACGCAGTTCAGCCTCCATCAGTGCCAGCATGGGCTGCACATGCCACCACTCAAGCCAGGCTGTGCCACCCTCGGTCACCACCACTGCGCTGATAG----CAGCTGGATGAAATTGGCAAAGACAGGAGGTAGCCCTGGCTCAGGCACGCATGGCTCAGCTAGCTCCATGGACAGCCAAGCCTCAGGAGCCAGGGTGGAGAAAGCTTCATAATGGCCATAGGCATTGtcctcatactcctccacctcctccAGTCTGCAGCCAGCCACCATGTTGTGTGTCAGCAAGGCTTCCCACAGCCCCCGCCTCTAACCATTGACACTGAGGTCTTCCACGCAGCCAGCCCAGCAGGGAGGCATTGGCAGCCCCTGGTGTCAGGCCTGAGCGGTGTTCCTGGAGGTGACGAGAGGCCTCTGCAACCAGCTCCCCAAGAAGGAGACTGTCACGTGGCTCCAGGTAGCTGAGGACTCCTCGGTTCAAAGTACGTGT-GGGGTACCGGTCCATGGAGATTTCTAGCTGGTGAGTGTTGATGTGGATGCTGACCTTGTGGGGCTGTGCGTCAGCCACAGGCACACAGTTGAGGAGCAACACAGTACCCTGGCCCTTCTCAACCATGGACCACAGGTGGCCCTCAAATATGTCCACATGGATGAAGTCCCCATGCCAGCCTGCTGCCTGGAAGGCCAAGGGTGCCTGCCAGCTCTGTGTGGTGAGTGTAAACTCCAGGGTTCCTTCATCCTGAGTGCCCCAGGCAGGGAAGGCAGCCAGAGAGTGGGGCCCAGAGAAGCCCAGGGCCACATCGTCATTGGCAGAAAACTCTTCAGCACAGCCCTCATGCTTATTGGGGGTCAGAGGCTG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        28851 851 -    378907 CCACAGTTCAGCCTCCATCAGTGCCAGCATGGGCTGCACATGCCACCACTCAAGCCAGTCTGTGCCACCCTTGGTCACCACCACTGCGCTGATAG----CAGCTGGATGAAATTGGCAAAGACAGGAGGTAG-CCTGGCTCAGGCACGCATGGCTCAGCTAGCTCCACGGACAGCCAAGCCTCGGGAGCCAGGGTGGAGAAAGCTTCATAATGGCCATAGGCATTGtcctcatactcctccacctcctccAGTCTGCAGCCAGCCACCATGTTGTGCGTCAGCAAGGCTTCCCACAGCCCCCGCCTCTAGCCATTGACACTGAGGTCTTCCATGCAGCCAGCCCAGCAGGGAGGCATTGGCAGCCCCTGGTGTCAGGCCTGAGCGGTGTTCCTGGAGGTGATGAGAGGCCTCTGCAACCAGCTCCCCAAGAAGGAGACTGTCACGTGGCTCCAGGTAGCTGAGGATTCCTCGGTTCAAAGTACGTGT-GGGGTACTGGTCCATGGAGATTTCTAGCTGGTGAGTGTTGATGTGGATGCTGACCTTGTGGGGCTGTGCGTCAGCCACAGGCACACTGTTGAGGAGCAATACAGTACCCTGGCCCTTCTCAACCATGGACCACAGGTGGCCCTCAAATATGTCCACATGGATGAAGTCCCCATGCCAGCCCGCTGCCTGGAAGGCCAAGGGTGCCTGCCAGCTCTGTGTGGTGAGTGTAAACTCCAGGGTTCCTTCATCCTGAGTGCCCCAGGCAGGGAAGGCAGCCAGAGAGTGGGGCCCAGAGAAGCCCAGGGCCACATCGTCATTGGCAGAAAACTCTTCAGCACAGCCCTCATGCTTATTGGGGGTCAGAGGCCG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95275977 845 + 121039945 GCGCAGCTCAGCCTCCATCAGGTCCAGCGTGGGCTGCACGTGCCGCCACTCAAGCCAGGCTGTGCCCCCCTCAGCCACCACCAGTGGGCTGATAG----CAGCTGTGTGAAATTGGCAAAGACAGGAAGCAGCCCTGGCTCAGGCACGCATGGCTCAGGCAGCTCCATGGCAGGCCAAGCCTCGGGGGCCAGGGTGGAGAAAGCTTCATAATGGCCATAGGCAtcgtcctcatac---tcctcctcctccAGCCTGCAGCCAGCCGCCATGTTGCGCGTCAGCAAAGCTTCCCTCAGCCCCTGCCTCTGGCCATTGACACTGAGGTCTTCCATG----CAGCCCAGCAGGGAGGCATTGGTGGCCTCTGGTGTCAGGCCCAGGCGGTGTTCCTGGAGGTGACGAGAGGCCTCTGCATCCAGCCCCCCGAGAAGGAGACTGCCCCGTGGCTCCAGGTAGCTGAGGACTCCTCGGTTCGAAGTATGCGT-GGGGTACTGGTCCACGGAGATTTCCAGCCGGTGAGCATTGATGTGGACACTGACCTCATGGGGCTGCCCGTCGGCCACAGGCACACTGTTGTGGAGCAATACGGTACCCTGGCCCTTCTCCACCACGGCCCGCAGGTGGCCCTCAAATATGTCCACATAGATGAAGTCCCCACGCCGGCCCCCTGCCTGGAAGGCCAAGGGTGCCTGCCGGCTCTGTGTGGTGAGTGTAAACTCTAGGGTTCCTTCGTCCTGAGTGCCCCAGGCAGGGAAGGCAGCCAGAGAGTGGGGCCCAGAGAAGCCCAGGGCCACATCATCACCGGCAGAAAACTCTTCAGCACAGCCCTCATGCACATCGGGGGTCAGAGGCCG
i nomLeu3.chr6              C 0 C 0
s manLeu1.NW_012105520v1       357812 855 -   1458659 GCGCAGCTCAGCCTCCATCAGGGCCAGCATGGGTTGCACGTGCTGCCACTCAAGCCAGGCTGTGCCACCCTCAGCCACCACCAGTGGGCAGACAGTCAACAGCTGGGTGAAATTAGC--AGACAGGGTGCAGCCCTAGCTTAGGCACGCATGGCTCAGCTAGCTCCATGGCCAGCCAAGCCTTGGGGGCCAGCATGGAGAAAGCTTCGTAACGGTCACAGGCAtcgtcctcatactcctccacctcctccAGCCCTCAGCCAGCCGCCATGTTGTGCGTCAACAAGGCTTCCCGCAGCCCCCGCCTCTGGCCATTGACACTGAGGTCTTCCATGCAGCCATCCCAGCAGGGAGGCATTGGTGGCTCCTCGTGTCAGGTCTGGGCGGTATTCCTGGAGGTGACAAGAGGCCTCTGCAACCAGCCCCCCAAGAAGGAGACTGCCACGTGGCTCCAGGTAGCTGAGGACTCCTCGGTTCGAAGTACACGTGGGGGTACTGGTCCATGGAGATTTCCAGCTGGTGAATGTTGATGTGGACACTGACCTTGTGGGGCTGCCTGTCAGCCAAAGGCACACTGCTGAGGAGCAATGCAGTACCCTGGCCCTTCTCGACCATGGCCCACAGGTGGCCCTCAAATATGTCCACATGGATGAAGTCCCCATGTGGGTCCCCTGCCTGGAAGGCCAAGGGTGCCTGCTGGCTCTGTGTGGTGAGTGTCAACTCCAGGGTTCCTTCATCCTGAGTGCCCCAGGCAGGGACGGCAGCTAAAGAGTGGGGCCCACAGAAGCCCAGTGCCACATCCTCACTGGCAGAAAACTCTTCAGCACAGCCCTCATGCACCTCGGGGGTCAGAGGCTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3799830 846 -   4111199 GCGCAGCTCAGCCTCTATCAGGGCCAGCATGGGTTGCACATGCTGCCGCTCAAGCCAGGCTGGGCCACCCTCAGCCACCACTAGTGGGCAGATAGTCAACAGCTGGGTGAAATTAGC--AGACAGGGTACAGCCCTAGCTCAGGCACGCATGGCTCAGCTAGCTCCATGGCCAGCCAAGCCTTGGTGGCCAGCATGGAGAAAGCTTCATCATGGTCACAGGCAtcatcctcatactcctccacctcctccAGCCTTCAGCCAGCCGCCATGTTGTGTGTCAATAAGGCTTCCCGCAGCCCCTGCCTCTGGCCATTGACACTGAGGTCTTCCATGCAGCCATCCCAGCAGGGAGGCATTGGCGG---CTCGTGTCAGGTCTAGGCGGTATTCCTGGAGGTGACAAGAGGCCTCTGCAACCAGCCCCCCAAGAAGAAGACTGCCACGTGGCTCCAGGTAGCTGAGGACTCCTCGGTTCGAAGTACATGT-GGGGTACTGGTCCATGGAGATTTCCAGCTGGTGAATGTTGATGTGGACACTGATCTTGTGGGGCTGCCTGTCAGCCACAGGCACACTGCTGAGGAGCAATGCAGTACCCTGGCCCTTCTCGACCATGGCCCACAGGTGGCCCTCAAATATGTCCACATGGATGAAGTCCCCATGCGGGTCCCCTGCCTGGAAGGCCAAGGGTGCCTGCTGGCCCT-----GTGAGTGTCAACTCCAGGATTCCTTCATCCTGAGTGCCCCAGGCAGGGACGGCAGCTAAAGAGTTGGGCCCAGAGAAGCCCAGGGCCACATCCTCACCGGCAGAAAACTCTTCAGCACAGCCCTCACGCATGTCGGGGGTCAGAGGCCA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             396912 849 -   3282555 GCGCAGCTCAGCCTCTATCAGGTCCAGCGTGGGCTGCACGTGTCGCCACTCAAGCCAGGCTGTGCCGCCCTCGGCCACTACCAGCGGGCTGACGGTCAGCAGCTGAGTGAAATTGGCAAAAACAGGAGGCAGCCCAGGCTCAGGCACACATGGCTCAGGCAGCTCCATGGCCGGCCAAGCCTCGGGGGCCAGGGTGGAGAAAGCTTCGTAATGGCCGTAGGCATCGTCCTCATAC---TCCTCCTCCTCCAGCCTGCAGCCGGCCGCCATGTCACGGGTCAGCACGGCTTCCCGCAGCCCCCACCTCTGGCCATTGACACTGAGGTCTTCCATG----CAGCCCAGGAGGGAGGCATTGGTGGCGCTTGGCGTCAGGCCCAGGCGGTGTTCCTGGAGGTGACGAGAGGCCTCTGCATCCAGCCCCCCGAGGAGGAGACTGCCGCGTGGCTCCAGGTAGCTGAGGACCCCACGGTTCGAAGTACGCGT-GGGGTACTGGTCCACGGAGATTTCCAGCTGCTGAGCATTGATGTGGACGCTGACCTCATGGGGCTGCCCATCGGCCACAGGTACACTGTTGTGGAGCAGTACGGTACCCTGGCCCTTCTCGACCACAGCCCGCAGGTGGCCCTCAAATATGTCCACATAGATGAAGTCCCCATGCCTGCCCCCTGCCTGGAAGGCCAAGGGAGCCTGCCGGCTCCGTGTGGTGAGTATGAACTCCAGGGTTCCTTCATCCTGAGTGCTCCATGCAGGGAAGGCAGCCAGAGAGTGGGGCCCGGAGAAGCCCAGGGTCACATCATCACCAGCAGAAAACTCTTCAGCACAGCCCTCATGCACGTCGGGGGTCAGAGGCCG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       186388 849 -   1024465 GCGCAGCTCAGCCTCCATCAAGTCCAGCGTGGGCTGCACGTGTCGCCACTCAAGCCAGGCTATGCCGCCCTCGGCCACGACCAGTGGGCTGATGGTCAGCAGCTGGGTGAAATTGGCAAAAACAGGAGGCAGCCCAGGCTCAGGCACACACGGTTCAGGCAGCTCCAGGGCCGGCCAAGCCTCGGGGGCCAGGGTGGAGAAAGCTTCATAATGGCCGTAGGCAtcgtcctcatac---tcctcctcctccAGCCTGCAGCCGGCCGCCATGTCACGTGTCAGCACAGCTTCCCGCAGCCCCCACCTCTGGCCATTGACACTGAGGTCTTCCATG----CAGCCCAGGAGGGAGGCATTGGTGGCCCCTGGCGTCAGGCCCAGGCGGTGTTCCTGGAGGTGACGAGAGGCCTCTGCATCCAGCCCCCCAAGAAGGAGACTGCCACGTGGCTCCAGGTAGCTGAGGACACCGCGGTTTGAAGTACGCGT-GGGGTACTGGTCCACGGAAATTTCCAGCTGGTGAGCATTGATGTGGACACTGACCTCGTGGGGCTGCCCATCGGCCACAGGTACGCTGTTGTGGAGCAGTACGGTACCCTGGCCCTTCTCGACCACAGCCCGCAGGTGGCCCTCAAATACATCCACATAGATGAAGTCCCCATGCCGGCCCCCTGCCTGGAAGGCCAAGGGTGCCTGCCGGCTCCGTGTGGTGAGTATAAACTCCAGGGTTCCTTCATCCTGAGTGCCCCACGCAGGGAAGGCAGCCAGAGAGTGGGGCCCGGAGAAGCCCAGGGCCACATCATCACCAGCAGAAAACTCTTCAGCACAGCCCTCATGCACGTCGGGGGTCAGAGGCCG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       987690 849 +   3745603 GCGCAGCTCAGCCTCCATCAGGTCCAGCGTGGGTTGCACATGTCGCCACTCAAGCCAGGCTGTGCCGCCCTCGGCCACTACCAGTGGGCTGATGGTCAGCAGCTGGGTGAAATTGGCAAAAACAGGAGGCAGCCCAGGCTCAGGCACACATGGCTCAGGCAGCTCCATGGCCGGCCAAGCCTCGGGGGCCAGGGTGGAGAAAGCTTCATAATGGCCGTAGGCAtcgtcctcgtac---tcctcctcctccAGCCTGCAGCCAGCCGCCATGTCACGTGTCAGCAAGGCTTCCCGCAGCCCCCACCTCTGGCCATTGACATTGAGGTCTTCCATG----CAGCCCAGGAGGGAGGCATTGGCGGCCCCTGGTGTCAGGCCCAGGCGGTGTTCCTGGAGGTGATGAGAGGCCTCTGCATCCAGCCCCCCGAGAAGGAGACTGCCGCGTGGCTCCAGGTAGCTGAGGACGCCACGGTTCGAAGTACGCGT-GGGGTACTGGTCCACGGAGATTTCCAGCTGGTGAGCATTGATGTGGACACTGACCTCGTGGGGCTGCCCGTCGGCCACAGGTACACTGTTGTGGAGCAGTACGGTACCCTGGCCCTTCTCAACCACAGCCCGCAGGTGGCCCTCAAATATGTCCACATAGATGAAGTCCCCATGCCGGCCCCCTGCCTGGAAGGCCAAGGGTGCCTGCCGGCTCCGTGTGGTGAGTATAAACTCCAGGGTTCCTTCATCCTGAGTGCCCCATGCAGGGAAGGCAGCCAGAGAGTGGGGCCCGGAGAAGCCCAGGGCCACATCATCACCAGCAGAAAACTCTTCAGCACAGCCCTCATGCACGTCGGGGGTCAGAGGCTG
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67708733 849 - 124595110 GCGCAGCTCTGCCTCTGTCAGGTCCAGGGTGGGCTGCACGTGCCGCCACTCAAGCCAGGCCGTGCCACCCTCGGCCACCACCAGGGGGCTGATGGTAAGCAGCTGGGTGAAGTTTGCAAAGACAGCAGGCAGTCCCGGCTCAGGAATACATGGCTCTGGCAGTTCCATGGCTGGCCAAGCTTCTGGTGCCAGGGTGGAGAAAGTTTCATATGGGCCATAGACCTCTTCTTCATAT---TCATCCTCCTCAGGCCTGCATCCTGCTGACATGTCACGGGTCAGCCAGGCATCCCGGAGGCCCTGCCTCCTGCCATTAACACTGAAATCTTCTATG----CAGCCTACCAGGGAGATATTGGCAGCCCCCGGTGCCAGGCCCAGACGGTGCTCTTGGAGGTGGCGAGAGGCTTCTGTGTCCAGACCCCCAAGGAGGAGACTGCCACGTGGCTCCAGGTAGCTGAGGACCCCACGGTTGAAAGTACGCGT-AGGGTATTGGTCTACAGAGATTTCCAGCCGGTGAACATCTATGTGTACGCTGACCTCGTGGGGCTGCCCATCAGCCACAGGCACGCTGTTGCGGAGTAGCATGGTACCTTGGCCTTTCTCAACCACAGCCCGCAAGTGGCCCTCAAATATGTCCACGTAGATAAAGTTGCCACGCTTGTCCCCTGCTTGGAAGGCCAGGGGTGCTTGCTGACTCCGAGTGGTGAGCGTAAACTCCAGGGTGCCTTCCTCCCGAGTGCTCCAGGCAGGGAAGGCAGCCAGTGAGTGGGGCCCAGAGAAGCCCAGGCCCACTTCATCACCAGCAGAGAATTCTTCAGCACAACCTTCATGAACATCGGAGGTCAGCGGACG
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38477782 849 +  40214260 ACGCAGCTCGGCCTCGCTCAGGTCCAGCGTGGGCTGCAGGTGCCGCCACTCAAGCCAGGCTGTGCCCCCCTCGGCCACCACCAGCGGGCTGACAGTCAGCAGTTGGGTGAAGTTGGCAAAGACGGGAGGCAGCCCCGGTTCGGGCACGCAGGGCTCGGGCAGCTCCACGGCGGACCAGGCCTCCGGTGCCAGGGTGGAGAGAGCTTCATAGGTGCCGTAGGTGTCCTCCTCGTAC---TCGTCTTCCTCCAGGCTGCAGCCGGCCACCATGCTGCGAGTCAGCGAGGCTTCCCGGAGCCCCTGCCTCTGGCCGTTGATGCTGAGATCCTCCATG----CAGCCCAGGAGGGAGACGTTGACGGCCCCCGAGGCCAGGCCCAGGCGGTGTTCCTGGAGGTGGCGGGAGGCCTCTGTGTCCAGCCCCCCCAGGAGGAGACTGCCGCGGGGTTCCAGGTAGCTGAGGATCCCACGGTTGGAAGTCCGTGT-GGGGTACTGGTCCACGGAGATTTCCAGCTGGTGAGCATCCACGTGGACACTGACCTCATGGGGTAGCCCGTCAGCCACGGGCACGCTGTTGTGGAGCAACACGGTGCCCTGGCCCTTCTCCACCACAGCCCGCAGGTGGCCCTCAAATATGTCCACGTAGATGAAATCCCCGTGCCGGCCGCCCGCCTGGAAAGCCAGGGGCGCCTGTCGGCTCCGAGTGGTGAGTATGAACGCCAGGGTGCCCTCCTCCCGAGTGTTCCAGGCAGGGAAGGCAGCCAGCGAGTGGGGCCCAGAGAAGCCCAGAGCCACGCTGTCATCAGCAGAAAACTCTTCAGCGCAGCCCTCGTGCACGTCAGGGGTCAGTGGTCG
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             837718 849 +   1040364 GCGCAGCGCTGCCTCGCTCAGGTCCAGCGTGGGCTGCACGTGGCGCCACTCCAGCCAGACTGTGCCACCCTCAGCCACCACCAGGGGGCTGATGGTCAGCAGTTGGGTGAAATTGGCAAAGATGGGAGGCAGCCCCGGTTCAGGCACGCAGGGCTCAGGCAGTTTCACGGCTGGCCAGGCCTCAGTCGCCAGGGTGGAGAGCGCTTCATACGGGCCGTAGGCGTCCTCCTCGTAC---TCGTCTTCCTCCAGCCCGCAGCCGGCTGCCATGTCGCGCGTCAGCACGGCTTCCCGGAGCCCCTGCCTTTGGCCGTTGACGCTGAGGTCCTCCATG----CAGCCCAGCAGGGAGGCGTTGGTGACCCCAGGGGCCAGGCCCAGGCGGTGGTCCTGGAGGTGGCGAGAGGCCTCTGCGTCCAGGCCCCCAAGGAGGAGACTGCCCCGTGGCTCCAGGTAGCTGAGGACCCCCCGGTTGGATGTACGTGT-GGGGTACTGGTCCACGGAGATTTCCAGCCGGTGGGTGTCCACGTGGATGCTGACCTCGTGGGGCTGCCCGTCGGCCACGGGCACGCTGTTGTGCAGCAGTACTGTGCCCTGGCCCTTCTCGACCACGGCCCGCAGGTGACCCTCGAAGATGTCCACGTAGATGAAGTCCCCGCGCCGGCCCCCCGCCTGGAAGGCCAGGGGCGCCTGCCGGCTCCTGGTGGTGAGCGTAAACTCCAGGGTGCCCTCGTCCCGGGTGCTCCAGGCAGGGAAGGCAGCCAGGGAGTGGGGCCCCGGGAAGCCCAGGGCCACGTTGGCACTGGCAGAAAACTCTTCGGCACAGCCCTCAAGCACGTCTGCGGTCAGTGGCTG
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50421153  10 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=2147307.000000
s hg38.chr15_KI270850v1_alt    106492 424 +    430880 GAGGAGTCTGCGGCCATTGAGAGCGGCTGCATGGAGGCAACCCCTCAGGGGATGGCTGGTTCCCCTCAGGTAGGGCAGGCCAAGTCTCCCAGTGCTCCCAACAAAGAGCCCATA-GGGACTTCTAGGGGG---GCTCCCAGGACTACAGAGGAGGCATTCAGAAACCCATTGACTGACAATGTGGGCCAGTCCTCTGAGACAGTCAGAACTGTGGTGTGGGGGACGGAGCCACTCAGTAGAATTTCTGCTGGGGTCTGCAGCCTCAGCTCCTCCTGGCCCAGGACAAGCCTGACCTGAGGAGAGACGG-GGAATGGGAGATGGGGGGCAGCACTTTGAATCCATCATTTCCCTTATAAAA-GCACAGTGGGTTCCCCAC--AGGGGGCCCCAGAGCAGAAAACCTAGGACAAGGGCCTCTGGTGCCACTCCT
s panTro5.chr15              17343716 425 -  83230942 GGGGAGTCTGCGGCCATTGAGAGCGGCTGCATGGAGGCAACCCCTCAGGGGATGGCTGGTTCCCCTCAGGTAGGGCAGGCCAAGTCTCCCAGTGCTCCCAACAAAGAGCCCATAGGGGACTTCTAGGGGG---GCTCCCAGGACTACAGAGGAGGCATTCAGAAACCCATTGACTGACAATGTGGGCCAGTCCTCTGAGACAGTCAGAACTGTAGTGTGGGGGACAGAGTCACTCAGTAGAATTTCTGCTGGGGTCTGCAGCCTCAGCTCCTCCTGTCCCAGGACAAGCCTGACCTGAGGAGAGACAG-GGAATGGGAGATGGGGGGCAGCACTTTGAATCCATCATTTCCCTTATAAAA-GCACAGTGGGTTCCCCAC--AGGGGGCCCCAGAGCAGAAAACCTAGGACAAGGGCCTCTGGTGCCACTCCT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        29702 424 -    378907 GAGGAGTCTGCAGCCATTGAGAGCGGCTGCATGGAGGCAACCCCTCAGGGGATGGCTGGTTCCCCTCAGGTAGGGCAGGCCAAGTCTCCCAGTGCTCCCAACAAAGAGCCCATAGGGGACTTCTAGGGGG---GCTCCCAGGACTACAGAGGAGGCATTCAGAAACCCATTGACTGACAATGTGGGCCAGTCCTCTGAGACAGTCAGAACTGTAGTGTGGGGGACGGAGTCACTCAGTAGAATTTCTGCTGGGGTCTGCAGCCTCAGCTCCTCCTGGCCCAGGACAAGCCTGACCTGAGGAGAGACAG-GGAATGGGAGATGGGGGGCAGCACTTTGAATCCATCATTTCCCTTAT-AAA-GCACAGTGGGTTCCCCAC--AGGGGGCCCCAGAGCATAAAACCTAGGACAAGGACCTCTGGTGCCACTCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95276822 427 + 121039945 GAGGAGGCTGCGGCCATTGAGGGTGGCCGCATGGAGGCAACCCCTCAGGGGTCGGCTGGTTCCCCTCAGGTAGGGCAGGCCAAGGGTCCCAGTGCCCCCAACAAAGAGCCCACAGGGGACCTCTAGGGGG---GCTCCTGGGACTGCAGAGGAGGCGTTCAGAAACCCACCAACTGACAATGTGGCCCAGCCCTCTACGACAGTCAGCACCGTAGTGTGGGGAACGGAGTCACTCAGCAGCGTCTCTGCTGGAGTCTGCAGCCTCAGCTCCTCCTGGCTTAGGACAAGTCTGACCTGAAGAGAGATGG-GGAGTGGGAGATGGGGGGCAGCACTTGGAATCCATCATTTCCCTTATAAAA-GCATAGTGGGTTCCCCACTTTTGGTGCCCCAGAGCGGAAAACCTAGGACAAGGGCCTCTGGTGCCACTCCT
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50421163 427 -  58131712 GAGGAGGCTGCAGTCATTGAGGGTGGCTGCATGGAGGCAACCCCTCAGGGGTCGGCTGCTTCCCCTCAGGTAGGGCAGGCCAAGGCTCCCAGTGCCCCCAACAAAGAGCCCATAGGGGACCTCTATGGGG---GCTCCTGCGACTGTACAGGAGGCGTTCAGAAACCCATCAACTGACAATGTGGCCCAGCCCTCTACGACAATCAGCACCATAGTATGGGCAAAGGAGTTACTCAGCAGCTTCTCTGCTGGGGTCTGTAGCTTCAGCTCCTCCTGGCTCAGGACAAATCTGACCTTAAGAGAGATGG-GGAGTGGGAGATGGGGAACAGAATTTTGAATCCATCATTTCCCTTATAAAA-GCATAGTGCATTCCCCACACTTGGGGCCCCAGAGTGGAAAACCTAGGACGAGGGCCTCTGGTGCCACTCCT
i chlSab2.chr26             I 10 C 0
s manLeu1.NW_012105520v1       358667 427 -   1458659 GAGGAGGCTGCAGCCATTGAGGGTGGCTGCATAGGGGCAATCTCTCAGGGGATAGCTGGTTCCCCTCAGGTAGGGCAGGCCAAGGCTCCCAATGCTCCCAACAAAGAGCCCACAGGGGACTTCTAT-GGG---GCTCCCAGGACTGCAGAGGAGGCATTCAGAAACCCATCAACTGACAGTGTGGCCCAGCCCTCTGAGACATTCAGCACCATAGTGCGGGGGATGGAGTCGCTCAGCAGCATTTCTGCTGGGGTCTGCAGCCTCAGCTCCTCCTGGCCCAGGACAAGTCTCACCTGAGGAGAAACGG-GGAATGGGAGATGGGGGGCAGCACTTTGAATCCATCATTTCCCTTATAAAACACACAGTGGGTTCCCCACAGTTGGGGCCCCAGAGCAGAAAACCTAGGACAAGGGCCTCTGGTGCCACTCCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3800676 427 -   4111199 GAGGAGGCTGCAGCCATTGAGGGTGGCTGCATAGGGGCAATCTCTCAGGGGATAGCTGATTCCCCTCAGATAGGGCAGGCCAAGGCTCCCAATGCTCCCAACGAAGAGCCCACAGGGGACCTCTAG-GGG---GCTCCCAGGACTGCAGAGGAGGCGTTCGGAAACCCATCAACTGACAATGTGGCCCAGCCCTCTGAGACAGTCAGCATGGTAGTGTGGGGGATGGAGTTGCTCAGCAGCATTTCTGCTGGGGTCTGCAGCCTCAGCTCCTCCTGGCCCAGGACAAGTCTCACCTGAGGAGAGACTG-GGAATGGGAGATGGGGGGCAGCACTTTGAATCCATCATTTCCCTTATAAAACATACAGTGGGTTCCCCACAGTTGGGGCCCCAGAGCAGAAAACCTAGGACAAGGGCCTCTGGTGCCACTCCT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             397761 427 -   3282555 GAGGAGGCTGCGGCCATTGAGGGTGGCTGCATGGAGGCACCCCCTCAGGGGTCGGCTGGCTCCCCTCAGGTACGACAGGCCAAGACTCCCAGTGCCCCCAACGAAGAGCCCATAGGGGACCTCTAGGGGG---GCTTCCGGGACTGCAGAGGAGGCGTTTAGAAGCCCGTCGACCGACAGCGTGGCCCAGCCGTCTGAGACGGTCAGCACCGCAGTGTGGGGGAGGGAGTCACTCAGCAGCGTCTCTGCAGGGGTCTGCAGCCTCAGCTCCTCCTGGCCGAGGACGAGTCTGACCTGAGGAGAGACAG-GGAATGGGAGACGGGAGACAGCACTTTGAATCCATCATTTCCCTTATAAAA-GCAGAGTGGGTTCCCCACAGTTGGGGCCCCAGAGCGGAAAACCCAGGACAAGGGCCTCTGGTGTCACTCCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       187237 426 -   1024465 GAGGAGGCTGCGGCCATTGAGGGTGGCTGCATGGAGGCACCCCCTCAGGGGCCGGCTGGCTCCCCTCAGGTACGAAAGGCCAAGACTCCCAGTGCCCCCAACGAAGAGCCCGTAGGGGACCTCTAGGGGG---GCTTCTGGGACTGCAGAGGAGGCGTTTAGAAGCCCATCGACCGACAGCGTGGCCCAGCCCTCTGAGATAGTCAGCACCGCAGTGTGGGGGATGGAGTCACTCAGCAGCACCCCTGCTGGGGTCTGCAGCCTCAGCTCCTCCTGGCCGAGGACAAGTCTGACCTGAGGAGAGACAG-GGAATGGGCGATGGGGGACAGCACTTTGAATCCATCATTTCCCTTATAAAA-GCGTAGTGGGTTCCCCACAGTCGAGGCCCCAGAGTGGAAAA-GTAGGACAAGGGCCTCTGGTGCCACTCCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       988539 427 +   3745603 GAGGAGGCTGCGGCCATTGAGGGTGGCTGCATGGAGGCACCCCCTCAGGGGTCGGCTGGTTCCCCTCAGGTACGACAGGCCAAGACTCCCAGTGCCCCCAACAAAGAGCCCGTAGGGGACCTCTAGGGGG---GCTTCCGGGACTGCAGAGGAGGCGTTTAGAAGCCCATCGACTGACAACGTGGCCCAGCCCTCTGAGACAGTCAGCACTGCAGTGTGGGGGATAGAGTCACTCAGCGGTGTCTCTGCTGGTGTCTGCAGCCTCAGCTCCTCCTGGCCAAGGACAAGTCTGACCTGAGGAGAGACAG-GGAATGGCAGATGGGGGACAGCACTTTGAATCCATCATTTCCCTTATAAAA-GCATAGTGGGTTCCTCACAGTTGGGGCCCCAGAGCAGAAAACCCAGGACAAGGGCCTCAGGTGCCACTCCT
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67709582 385 - 124595110 GAGGAGGTTGCGGCCATTGAGAATGGCTGAGTGGAGGCAGCCCCTTAGGGGTCGGCTGATTCCCTTCAGGTAAGGCAGGTCAAGGCTTCCAGAGGAGCCCACGAAGAGCCCGTAGGTGGCCTTGAGGTGGGATGCTCTTGGGATGGGAGCAGAGGTGTTCAACACTCCGTCAACAGACAGCACAGCCCAGCTGTCGGAGACAGTGAGCACTACAGTGTGGGGGGCAGAGTCACTCAGCACGGTGTCTGCTGGCGTCTGCAGCTTTAGCTCCTTCTGTCCCAGGGCAAGTCTGACCTGAAGAGAGACAG-AGAGGTCAGGGGTGGGAGTGGC----TGACACTTCTGTCTACC---------CCACACTGAGCCCCCTTC-----AGAACCCGGA---------CTGGGACA-------------------CC
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38478631 426 +  40214260 GAGGAGGTTGCGGCCGTTGACGGTGGCGGCGTGCAGGCAGCCCCTCAGGGGCCGGCTGGCTCCCATCAGGTAGGACAGGCTCAGGCTCCCAGTGCCCCCCAGGAAGATCCCATAGGGGACCTCCAGGGGA---GCTCCCAGGACGGGGGCTGAGGCGTTCAGCAGCCCATCGACGGACAACGAGGCCTCGCTGTCTGACACAGTCAGCTCCACGGAGTGGACGGCGGAGTCGCTCAGCGGAGTCTCAGCTGGGGTCTGCAGCCTCAGCTCCTCCTGGCCCAGGGTGAGTCTGACCTGGGGAGAGACGGAGGGATGGGAG--TGGGGACAGCACTTCGGACGATCTGCTTCTCCTGTAAGA-ACATAGTTGGTCGGCCACATTGGAGTCCCCAGAGCAGACGTCCTGGGACAAAGGTTTCTCATGCCACCCCT
i canFam3.chr30             C 0 I 188
s dasNov3.JH572216             838567 389 +   1040364 GAGGAGGCTGCGGCCATTGAGGGTGGCGGCATGGAGGCAACCTCTCAGGGGCCGGCTGGCCCCCCTCAGATAGGGCAGACCAAGGCTCCCGGTGCCCCCCACGAAGAGCCCATAGGGGACGTCCAGGGGG---GCCCCCGGGGCTGGGGCTGAGCTGTTCAGGAGCCCATCCACTGACAGCGTGGCCCAGCCGTCTGTCATGGACAGGACCACAGCGTGGGGGACGGAGTCGCTGAGCGGGGTCTCCGCCGGGGTCTGCAGCCTCAGCTCCTCCTGGCCCAGGACGAGCCGGACCTGGGGAGAGACGG-GGAGTCGGGG--TGGGGTCAGCAC--------------------------A-GC------GGTCTCCTAC--GTGGATCCCCAGGG--AAGGACCTAGGGCAAAGGCTCCGCAGGGCACCCTT
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=1020323.000000
s hg38.chr15_KI270850v1_alt    106916 259 +    430880 CTTGCCTTCCTGCCATCTCtttattcatcctccaaacactcaccaaaggaaactctgggccaggcctggatgggctctggggaccctggtgtgaatcagatgtggtccttgcccacaaggaa---ctgacatatagcaagatgctcttctagaaacccaacctgtatttttaaattctcctcctctttcct-tgagtgagaagcaccagaaatattgtcttggaatctag--a---tttcacccct-ggaataatgggtaactgagaat
s panTro5.chr15              17344141 259 -  83230942 CTTGCCTTCCTGCCATCTCtttattcatcctccaaacactcaccaaaggaaactctgggccaggcctggatgggctctggggaccctggtgtgaatcagatgtggtccttgcccacaaggaa---ctgacatatagcaagatgctcttctagaaacccaacctgtatttttaaattctcctcctctttcct-tgagtgagaagcaccagaaatattgtcttggaatctag--a---tttcacccct-ggaataatgggtaactgagaat
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        30126 259 -    378907 CTTGCCTTCCTGCCATCTCtttattcatcctccaaacactcaccaaaggaaactctgggccaggcctggatgggctctggggaccctggtgtgaatcagatgtggtccttgcccacaaggaa---ctgacatatagcaagatgctcttctagaaacccaacctgtatttttaaattctcctcctctttcct-tgagtgagaagcaccagaaatattgtcttggaatctag--a---tttcacccct-ggaataatgggtaactgagaat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95277249 259 + 121039945 CTTGCCATCCTGCCATTTCtttactcatcctccaaacactcaccaaagggaactctgggccaggcctggatgggctctgaggaccctgatgtgaatcagatgtcatctttgcccacaaggaa---ctgacaTACagcaagatgctctcctagaaatccaacctgtatttttaaattctcctcctctctcct-tgagtgagaggtgccagaaatattgtcttggaaccTCG--A---TTTCAGCCCT-GGAATAATAGGTAagtgggaat
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50421590 257 -  58131712 CTTGCCATCCTGCCATCTCtttactcatcctccaaacactcaccaaagg-gactctgggccaggcctggatgggctctggggaccgtgatgtgaatcagatgtgatcctggcccacaaggaa---ctgacatacagtaagATGCTCTCCTAGAAATCCAAACTG-ATTTTTAAATTCTCCTCCTCTTTCCT-CGAGTGAGAGGTGCCAGAAATATTGTCTTGGAATCTAG--A---TTTCACCCCT-AGAAAAATAGGTAACTGGGAAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       359094 258 -   1458659 CTTGCCTTCCTGCCATCTCtttattcatcctccaaacagtcatcaaaggaaactctgggccaggcctgaatgggctctggggaccctgatgtgaatcagatgtgctccttgcccacaaggaa---ctgacatatagcaagatgctcttctagaaacccaatctgtatttttaaattctccttctctttcct-tgagggagaggtgccagaaatactgtcttggaatcTAG--A---TTTCACCCC--GGAATAATGGGTAACTAAGAAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3801103 259 -   4111199 CTTGCCTTCCTGCCATCTCtttattcatcctccagacactcaccaaaggaaactctgggccaggcttgaatgggctctggggaccctgatgtgaatcagatgtgctccttgcccacaaggaa---ctgacaCAtagcaagatgctcttctagaaacccaacctgtatttttaaattctccttctctttcct-tgagtgagaggcgccagaaatactgtcttggaatcTAG--A---TTTCACCCCT-GGGATAATGGGTAACTAAGAAT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             398188 259 -   3282555 CTTGCCTTCCTGCCATCTCTTTACTTCTCCTCCAGACACTCACTAAAGGGAACTCTGGGTCAGGCCTGGATGGGCTCCGGGGGTCCTGATGTGAATTGGATGTGGTCCTCACCCACAAGGAA---ATGACGTACagcaagatactctcctagcattccaacctgtatttttaaattcttcccctctttcct-tgagtgagagatgccagaaatattgtcttggaatctgg--a---tttcaaccct-ggaataatgggtaaccgggaat
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       187663 262 -   1024465 CTTGCCTTCCTGCCATCTCTTTACTTATCCTCCAAACACTCACCAAAAGGAACTCTGGGTCAGGCCTGGATGGGCTCTGGGGGTCCTGATGTGAATCAGATGTGGTCCTTGCCCACAAGGAACTGATGACATACAGCAAGATACTCTCCTAGCATTCCAACCTGTATTtttaaattcttcccatctttcct-tgagtgagacatgccagaaatattgtcttggaatctgg--a---tttcaaccct-agaataatggggacctgggaat
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       988966 247 +   3745603 CTTGCCTTCCTGCCGTCTCTTTACTT-----------ACTCACCAAAGGGAACTCTGGGTCAGGCCTGGATGGGGTCTGGGGGTCCTGATGTGAATCGGATGTGGTCC-CGCCCACAAGGAA---CTGACATACagcaagatgctctcctagaaatccaacctgtatttttaaattcttcctctctttcct-tgagtgagagatgccagaaatattgtcttgtaatctgg--a---tttcaaccct-ggaataatgggtaactgggaat
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67709967 215 - 124595110 CTTAGCTCCCTATTGTT----------------------TCAACTGGGGAGAGTC------------------------AAGGCCCCAGTGTCGCTCAGAGACTGTCCCTGACC-CTGGGGA---TTTACACAAAGCAAGGTTCTCCCCTGAAGCAATACTTTGCCTGGTCTCCTTCTTCCTCTCTTCTCT-CCAGTGAGCAGTGCCAGAAAACCTACTGTGGGCTCTAGAAA---AACTACCTCTGGGAGTAATGTGCACTCTGGGAT
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38479245 211 +  40214260 cccTCCTTCCTGCCACCTCTTTACTTATCCCCCAAACA----------------------CGGGTCCAGATGGGCTCTGGGGTCCCTGATGTGAATCAGA-------------------GAA---GTGAC--AGAGCAAGATGCTCTCCTAGGGATTCAGTCTGTATGTTTT-ACCCTCGCCAGCTTTCCGACGGGGCAGGGCCACCAGACA-ACCACCTTGACCTCCAG--AAG-ATTCACTCTG-GGCATAGAGGGCATCT------
i canFam3.chr30             I 188 C 0
s dasNov3.JH572216             838956 174 +   1040364 TTCGCCTTCCTGCCATC-------------------------CCCAAGGCACCTCC-----------------------------------------------------------CAGGCAA---CTGCTATTtagcaagacgccctccaggagattccacttaggccttt---tcttcttcccctctcct-tgggcgagaagtgccagaag-attgccttggaatcaag--aagactcccccgct-ggaataacgggcacctgggaat
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=168415.000000
s hg38.chr15_KI270850v1_alt    107175 78 +    430880 ccgttgatcagtccccctaagtttggcaaagtttctcgaggtcactgaaggaagccaggctaactgttcagggacagg
s panTro5.chr15              17344400 78 -  83230942 cccttgatcagtccccctaagtttggcaaagtttctcgaggtcactgaaggaagccAGGCTAACTGTTCAGGGACAGG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        30385 78 -    378907 cccttgatcagtccccctaagtttggcaaagtttctcgaggtcactgaaggaagccAGGCTAACTGCTCAGGGATAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s manLeu1.NW_012105520v1       359352 78 -   1458659 TCCTTGATCAGTCCCCCTAAGTTTGGCAAAGTTTTTCAAGGTCACTGAGGGAAGCCAGGCTAGCTGCTCAGGGATAGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3801362 78 -   4111199 CCCTTGATCAGTCCCCCTAAGTTTGGCAAAGTTTTTCAAGGTCACTGAGGGAAGCCAGGCTAACTGTTCAGGGATAGG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             398447 78 -   3282555 cccttgatcagtccctctcaacaaggcaaagtttcttgaggtcactgaaggcagccaggctccctgttcagggatagg
i saiBol1.JH378276          C 0 I 16
s cebCap1.NW_016107979v1       187925 78 -   1024465 cccttgatcagtgcccctcaacagggcaaagtttcttggggtcactgaaggcagccaggttcactgttcagggatagg
i cebCap1.NW_016107979v1    C 0 I 20
s aotNan1.NW_018511953v1       989213 78 +   3745603 cccttgatcagtccccctcaacagggcaaagtttcttgggatcactgaaggcagccAGGCTCACTGTTCAGGGATAGA
i aotNan1.NW_018511953v1    C 0 I 38
s mm10.chr9                  67710182 53 - 124595110 CCCCCAATGAA-CCCCCTTAGTACGCAAAAGT--------------------AGCTTGGCTCACTGT---AGGCTAA-
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38479456 32 +  40214260 -------------------------------------GGGGTCACCG-GGGCAGCTAGGCTCATGGC---GGG-----
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             839130 62 +   1040364 tcccag---agttggcccgagttggccacagccccttggggtcactgagggcagccA-------------GGGACAGG
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50421847  0 -  58131712 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95277508  0 + 121039945 C

a score=-1120.000000
s hg38.chr15_KI270850v1_alt    107253 1 +    430880 -g
s panTro5.chr15              17344478 1 -  83230942 -G
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        30463 1 -    378907 -G
i gorGor5.CYUI01015946v1    C 0 C 0
s manLeu1.NW_012105520v1       359430 1 -   1458659 -G
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3801440 1 -   4111199 -G
i colAng1.NW_012116021v1    C 0 C 0
s mm10.chr9                  67710235 1 - 124595110 -G
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38479488 1 +  40214260 -G
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             839192 1 +   1040364 T-
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1       989291 38 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       188003 20 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50421847 0 -  58131712 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95277508 0 + 121039945 C
e saiBol1.JH378276             398525 16 -   3282555 I

a score=10323.000000
s hg38.chr15_KI270850v1_alt    107254 8 +    430880 agcccagg
s panTro5.chr15              17344479 8 -  83230942 AGCCCAGG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        30464 8 -    378907 AGCCCAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s manLeu1.NW_012105520v1       359431 8 -   1458659 AGCCCAGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3801441 8 -   4111199 AGCCCAGG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             398541 4 -   3282555 aatt----
i saiBol1.JH378276          I 16 C 0
s mm10.chr9                  67710236 8 - 124595110 AACCCAGA
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38479489 8 +  40214260 AGCCCGAT
i canFam3.chr30             C 0 I 2
s dasNov3.JH572216             839193 8 +   1040364 AGCCtaat
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1       989291 38 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       188003 20 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50421847 0 -  58131712 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95277508 0 + 121039945 C

a score=25702.000000
s hg38.chr15_KI270850v1_alt    107262 26 +    430880 cagatgctctgtgttctgg-------gaaaaaa---
s panTro5.chr15              17344487 33 -  83230942 CAGATGCTCTGTGTTCTGGaaaaaaaaaaaaaa---
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        30472 19 -    378907 CAGATGCTCTGTGTTCTGA-----------------
i gorGor5.CYUI01015946v1    C 0 C 0
s manLeu1.NW_012105520v1       359439 19 -   1458659 CAGATGCTCTGTgttcaga-----------------
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3801449 19 -   4111199 AAGATGCTCTGTgttcgga-----------------
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             398545 18 -   3282555 taaatgccctgtgttctg------------------
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       188023 18 -   1024465 taaatgccctgtgttctg------------------
i cebCap1.NW_016107979v1    I 20 C 0
s mm10.chr9                  67710244 19 - 124595110 GAGATGGTCTGTGTTCTCC-----------------
i mm10.chr9                 C 0 I 526
s canFam3.chr30              38479499 19 +  40214260 CAGATGCTCTGTTTTGAGG-----------------
i canFam3.chr30             I 2 I 2
s dasNov3.JH572216             839201 21 +   1040364 cagaggc-ctgtgttttga--------------agg
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1       989291 38 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50421847  0 -  58131712 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95277508  0 + 121039945 C

a score=-3307.000000
s hg38.chr15_KI270850v1_alt    107288 7 +    430880 -aaaaaaa
s panTro5.chr15              17344520 7 -  83230942 -aaaaaaa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        30491 2 -    378907 ------AA
i gorGor5.CYUI01015946v1    C 0 C 0
s canFam3.chr30              38479520 6 +  40214260 -TAAGTA-
i canFam3.chr30             I 2 C 0
s dasNov3.JH572216             839222 7 +   1040364 tttaata-
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1       989291 38 +   3745603 I
e mm10.chr9                  67710263 526 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       188041 0 -   1024465 C
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3801468 0 -   4111199 C
e manLeu1.NW_012105520v1       359458 0 -   1458659 C
e chlSab2.chr26              50421847 0 -  58131712 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95277508 0 + 121039945 C
e saiBol1.JH378276             398563 0 -   3282555 C

a score=731250.000000
s hg38.chr15_KI270850v1_alt    107295 296 +    430880 aaaaaaagctgcctgacctgtggtggaggaatatctcaaggagagatgaaggacatagttctgtcaccatgacattgacacaagaaatggctctggtatggtgctccca------gatgctagaataggtgatggcagagtatgggaactgcagaggcagaacactaagaaccatgatcttggagtcctg----------gtatggtgcatctctgtagggatgtggcatcac----------------tacctgcagagctcaacagcc--atcagcaccagactgcaccacataggtgttcaacagtgacaccttgtggcaatgagca
s panTro5.chr15              17344527 296 -  83230942 aaaaaaaGCTGCCTGACCTGTGGTGGAGGAATATCTCAAGGAGAGATGAAGGACATAGTTCTGTCACCATGACATTGACACAAGAAATGGCTCTGGTATGGTGCTCCCA------GATGCTAGAATAGGTGATGGCAGAGTATGGGAACTGCAGAACCAGAACactaagaaccatgatcttggagtcctg----------gtatggtgcatctctgtagggatgtggcatcac----------------tacctgcagagctcaacagcc--atcagcaccagactgcaccacataggtgttcaacagtgacaccttgtggcaatgagca
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        30493 297 -    378907 ACAAAAAGCTCCCTGTCCTGTGGTGGAGGAAGATCTTAAGGAGAGATGAAGGACATAGTTCTGTCACCATGACATTGACACAAGAAATGGCTCTGGTATGGTGCTCCCA------GATGCTAGAATAGGTGATGGCAGAGTATGGGAACTGCAGAACCAGAACactaagaaccatgatcttggagtcctg----------gtatggtgcatctctgtaggggtgtggcatcac--------------tgtacctgcagagctcaacagcc--atcagcaccagactgcaccacataggtgttcaacagtgaca-cttgtggcagtgagca
i gorGor5.CYUI01015946v1    C 0 C 0
s manLeu1.NW_012105520v1       359458 298 -   1458659 aagaaaagctccctgacctgtggtggagggagatctcagggacagatcaaggacatagttctgtcaccatgacaatgacaccagaaatggctctggtatggtgctccca------gatgctagaacaggtggtggcagagtatgggaactgcaaaaccagaacaataagagccatgatcttggagtccTG----------GTACAGTGCATCTCTGTAGGGGTGTGGCATCAC--------------TGTACCCGCAGAGCTCAGCAGCC--ATCAGTGCCAGACTGCACCACattagtgttcaacagtgacaccatgtggcagtgagca
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3801468 298 -   4111199 aacaaaagctccctgacctgtggtggagggagatctcagggacagatgaaggacatagttctgtcactatgacaatgacaccagaaatggagctggtatggcgctccca------gatgctagaacaggtggtggcagagtatgggaactgcaaaaccagaacaataagagccatgatcttggagtcctg----------gtatggtgcatctctgTAGGGGTGTGGCATCAC--------------TGTACCCACAGAGCTCAGCAGCC--ATCAGTGccagactgcaccacactggtgttcaacagtgacaccttgtggcagtgagca
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             398563 296 -   3282555 aaaaacagctccgtgacctggggtagagggaagtcttggggagacatgaaggacgttgttccatccccatgac--tgacaccagaaatggctctggtacagtgctccca------cctggtagaatgagaggtggcagagtatgggaagtgcagaaccagagcactaagacgtgtaattttggagttctg----------gtttggagcatctctggAGGGGTGTGGCATCGT--------------CGTACCTACAAAACTGAACAGCT--CTCAGCGCCAGACTGCACCACGCTGGCGttcaacagtgacactttgtggcagtgagaa
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       188041 297 -   1024465 aaaaacagctccctgacctggggtagagggaagtctt-gggagagatgaaggacatttttccgtccgcatgacattgacaccagaaatggctctggtacagtgctccca------catggtggaatgggaggtggcagagaatgggaactgtagaaccagagcactaagagctgtaattctggagttctg----------gtatggtgcatctctgtaggggtgtggcatcgt--------------tgtacccacaaaactgaacagct--atcagcgccagactgcaccacgctggtgttcaacagtgacaccttgtggcagtgagac
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       989329 298 +   3745603 aaaaacagctccccgacctggggtagagggaagtcttggggagagatgaaggacattgtttcgtccccatgacattgacaccagaaatggctctggtacagtgctccca------catggtagaatgggaggtggcagagtatgggaactgcagaaccagagcactaagaactgtaattttggagttctg----------gtatggagcatctctgtaggggtgtggcatcgt--------------tgtacccacaaaactgaacagct--atcagcgccagactgcaccacgctggtgttcaacagtgacaccttgtggcaataagaa
i aotNan1.NW_018511953v1    I 38 C 0
s canFam3.chr30              38479526 293 +  40214260 AAGAAAAGCTCCCTGACCTGGGGTGAGGGA--GCCGCGGGGAGAGGAGAA-----CTGTTCTGTCTCTAGGACTTTGGCACCAGAACTGGGCCTGGGGTGGCCTTGCCACTACTGGACGGCAGGATGGGTGGAGGCAGAGTACGGGAAGAGCAGAGCC------CTGGGCACGGCGGCCTTGGGAGCCCA----------GC--------TCCCC---GGGCTGTGGCATCGCCCTACCTGTCCCGTCACACCTGTCGGGCGGAAGGGCT---CCGGCCCCAGGCTGCACCCGGGCCCCGCtcaacagtgccgcctattggcagagagaa
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             839229 300 +   1040364 gagaaaagctccctgacctgagg-ggcggggatccccggggtgagaagagggatgtggttctatctccgtgacactggctc----------tctggcatggtgttcccacagcctgatggaagcctgggtggtggcagagcgtgggaactgaaggagcagagcatgaggcagtatgaccttgggcgtccatgcatgccacgtgtgcagcactccctcaagggcatggccctgg--------------tatgcct----agcagtggagccgcatcagtgccaggctgccctgggccagcctcctacagtgaccccttgtggtgg-gagaa
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  67710263 526 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50421847   0 -  58131712 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95277508   0 + 121039945 C

a score=601172.000000
s hg38.chr15_KI270850v1_alt    107591 198 +    430880 gcaatgac-agcagcagactgaccaagccctagtcctcttcccactggggtgtggaaagagatggctgccccaaatttgttaatttg----ttttttttttccttctaaaatagagatggggtctcattgtgtggctcaggccagtcttgaactcctaggctcaagtgatctttccaccttggtctcccaaagtggtgggatt
s panTro5.chr15              17344823 202 -  83230942 gcaatgac-agcagcagactgaccaagccctagtcctcttcccactggggtgtggtaagagatggctgccccaaatttgttaatttgttttttttttttttccttctaaaatagagatggggtctcattgtgtggctcaggccagtcttgaacacctaggctcaagtgatctttccaccttggtctcccaaagtggtgggatt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        30790 194 -    378907 gcaatgac-agcagcagactgaccaagccctagtcctcttcccactggggtgtggaaggagatggctgccccaaatttgtcaa--------ttttttttttctttctaaaatagagatggggtctcattgtgtggctcaggccagtcttgaactcctaggctcaagtgatcttcccaccttggtctcccaaagtggtgggatt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95277508 195 + 121039945 gcaatgac-agcagcagactgaccaaaccctagtcctctccccactggggtgtggaaggagatggctgacccaaatttgt--gttt-----ttttttttttctttttaaaatagagatggggtctcattgtgtggctcaggccagtcttgaactcctaggctcaagtgatcttctcaccttggcctcccaaagtggtggggtt
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50421847 184 -  58131712 gcaatgac-agcagcagactggccaagccctagtcctctccccactggggtgtggaaggagatggcttacccaaat------------------tttttttctcttaaaaatagagatggggtctcattgtgtggctcaggccagccttgaactctcaggctcaagtgatcttcccaccttggcctcccaaagtggtgggatt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       359756 195 -   1458659 gcaatgac-agcagcagactgaccaagccctagtcctcttctcactggggtgtggaaggagatggttgccccaaatttga--cttt-----ttgtttttttctttctaaaatagagacggggtctcattgtgtgactcagaccagtcttgaactcctaggctcaagtgatcttcccatcttggcctgccaaagtggtgggatt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3801766 195 -   4111199 gcaatgac-agcagcagactgacaaagccctagtcctcttctcactggggtgtggaaggagATGGTTGCCCCAAATTTGT--TTTT-----TTGtttttttctttctaaaatagagatggggtctcattgtgtgactcagaccagtcttgaactcctaggctcaagtgatcttcccaccttggcctgccaaagtggtgggatt
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             398859 183 -   3282555 gcaatgacaagcagcagactgaccaagcactcgtcctctgcccacgggggtgtggaaggagatggctgccccaaat---------------tcatttt-----ttaaaaaatagagatggggtctcattgtgtggctcaggccagtcttgaaatcctaggctcaaggcatcttcccaccttggcctcccaaagtggtgggatt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       188338 179 -   1024465 gcaatgacaagcagca----gaccaagcgctagtcctctccccactggggtgtggaaggagatggctgccccaaat---------------tcatttt-----tttaaaaatagagatggggtctcattgtgtggctcaggccagtcttgaaatcctaggctcaagtgatcttcccaccttggcctcccaaagtggtgggatt
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       989627 185 +   3745603 gcaatgacaagcagcagactgaccaagcactagtcctctccctaccggggtgtggaaggagacggctgccccaaat---------------tcattttt---ctttttaaatagagatggtgtctcattgtgtggctcaggccagttttgaaatcctagactcaagtgatcttctcaccttggcctcccaaagtggtgggatt
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr30              38479819  74 +  40214260 gccatggc-agcggcaggtggaccg-----tcgccctc-----------------------------------------------------------------------------------------------------------------------aggccccgcccgtcctctcccccgaaccccccaag--tgtggaa--
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             839529  91 +   1040364 gcaatggc-agcagcagg-tgatgaggccacagttgaatccccattggggtgtggaagcagatggat-ccccaaatttgt----------------------------------------------actatgta----------------------------------------------tgacct-----------------
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  67710263 526 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=92406.000000
s hg38.chr15_KI270850v1_alt    107789 25 +    430880 ataggcataagccactgcacccagc
s panTro5.chr15              17345025 25 -  83230942 ataggcataagccactgcacccagc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        30984 25 -    378907 ataggcatgagccactgcacccagc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95277703 25 + 121039945 ataggcatgaaccactgcacccagc
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr26              50422031 25 -  58131712 ataggcatgagccactgcactcagc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       359951 25 -   1458659 ataggcatgagtcactgcacccagc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3801961 25 -   4111199 ataggcatgagtcactgcacccagc
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             399042 25 -   3282555 ataggtatgagccactgcacccagc
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       188517 25 -   1024465 ataggtgtgagccactgcaccctgc
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       989812 25 +   3745603 ataggtgtgagccactgcacccagc
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67710789 12 - 124595110 atgggtctaagc-------------
i mm10.chr9                 I 526 C 0
s canFam3.chr30              38479893  9 +  40214260 ----------------gcagccggc
i canFam3.chr30             C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH572216             839620  0 +   1040364 C
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65355742 12232 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=5032133.000000
s hg38.chr15_KI270850v1_alt    107814 956 +    430880 ctgccccaaatttggactaagaccctgggttcttaaactcttcctggtatggggtaagactcaagtaggagccacaagactccttgataataaagcttgtggtgtcttgaaggatgaaatggaa--aa---at---gaaGCTG-----AGGCAGTACTGGTGCTGTTACTCTCATGGACAG-ACAG------TGGTGCT--GCAGATAAATT------GGTGCAGTGCCACCAGGAT---GCGCAG----GGgtcatgggggc-cc----------------------------------------aggag---------ggggtctcgccga---------------------------ggaggaggg--gatgcccacactgaaacttcaaggagagactagagttcggcaggtacagggaatgg---gtgggtcacacacctggcaggag-gagtgtgatgacca--aaggcctggcagcaagtgaccataagatggccaggaact-gaaagcagttcagtgcagtc-agagcacaaagggccagtgagggcttgtggtg----ggaaacatggttggaaggagccggtgggcagagccagttcatgaagGATTTACCATTTCTGAGCTGC---TGCTGcccatcccacagtggagaacttgaga-ccccaag--aaaagtgacttac--acaaggtca-acagccagctggggttcactcaaagctagacaaggaatctc--gcccc------------aa------------tcccagGGGG--ACGTCACTCACCTGCAGGTGTCCAGAGTAGAGCTGCAGCAGGAGGTGGTCAGCTGGGCCTGCTGCCAGGAGAAGGAGGGCTTCGGGTTGGGACATGGAGAACTGCAGCTGCAGGTCTATGTCAGTCAGAGCCATGGCCACAGTCACCTCCGGGTGGTTCTAACCAAAGAAGGAAGCTGTGTGAGAGAGGGAGCTGTGGTCAAGGCTCAGATTCTTGCCTGGAGGAGGCGAGGTGCTGCAGGGAGGGATGGGTGGGTTGCAGAAAGGGG-------TCCGTGCTGGTGCACCCTCATGGTTCTGCCATACGGTGCTG-CCTCTGAGCACTGCCCAGATC
s panTro5.chr15              17345050 956 -  83230942 ctgccccaaatttggactaagaccctgggttcttaaactcttcctggtatggggtaagactcaagtaggagccacaagactccttgataataaagcttgtggtgtcttgaaggatgaaatggaa--aa---at---gaaGCTG-----AGGCAGTACTGGTGCTGTTACTCTCATGGACAG-ACAG------TGGTGCT--GCAGATAAATT------GGTGCAGTGCCACCAGGAT---GCGCAG----GGgtcatgggggc-cc----------------------------------------aggag---------ggggtctcgccga---------------------------ggaggaggg--gatgcccacactgaaacttcaaggagagactagagttcggcaggtgcagggaatgg---gtgggtcacacacctggcaggag-gagtgtgatgacca--aaggcctggcagcaagtgaccataagatggccaggaact-gaaagcagttctgtgcagtc-agagcacaaagggccagtgagggcttgtggtg----ggaaacatggttggaaggagctggtgggcagagccagttcatgaagGATTTACCATTTCTGAGCTGC---TGCTGCCCATCCCACAGTGGAGAACTTGAGA-CCCCAAG--AAAGGTGACTTAC--ACAAGGTCA-ATAGCCAGCTGGGGTTCACTCAAAGCTAGACAAGGAATCTC--GCCCC------------AA------------TCCCAGGGGG--ACGTCACTCACCTGCAGGTGTCCAGAGTAGAGCTGCAGCAGGAGGTGGTCAGCTGGGCCTGCTGCCAGGAGAAGGAGGGCTTCGGGTTGGGACATGGAGAACTGCAGCTGCAGGTCTATGTCAGTCAGAGCCATGGCCATAGTCACCTCCAGGTGGTTCTAACTGAAGAAGGAAGCTGTGTGAGAGAGGGAGCTGTGGTCAAGGCTCAGATTCTTGCCTGGAGGAGGCGAGGTGCTGCAGAGAGGGATGGGTAGGTTGCAGAAAGGGG-------TCCGTGCTGGTGCACCCTCATGGTTCTGCCATACGGTGCTG-CCTCTGAGCACTGCCCAGATC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        31009 957 -    378907 ctgccccaaatttggactaagaccctgggttcttaaactcttcctggtatgggggaagactcaagaaggagccacaagactccttgataataaagcttgtggtgtcttgaaggatgaaatggaa--aa---at---gaaGCTG-----AGGCAGTACTGGTGCTGTTACTGTCGTGGACAG-ACAG------TGGTGCT--GCAGAGAAATT------GGTGCAGTGCCACCGGGAT---GCGCAG----GGgtcatgggggc-cc----------------------------------------aggag---------ggggcctctccca---------------------------ggaggaggg--gatgcccacactgaaacttcaaggagaggctagagttaggcaggtgcagggaatgg---gtggggtgcacacctggcaggag-gagtgtggtgacca--aaggcctggcagcaagtgaccacaagatggccaggaact-gaaagcagttcagtgcagtc-agagcacaaagggccagtgagggcttgtggtg----ggaaacatggttggagggagccggtgggcagagccagttcatgaagGATTTACCATTTCTGAGCTGC---TGCTGcccatcccatagtggagaacttgaga-ccccaag--aaaggtgacttac--acaaggtcacacagccagctggggtttagtcaaagctagacaaggaatctc--gcccc------------aa------------tccCAGGGGG--ATGTTACTCACCTGCAGGTGTCCAGGGTAGAGCTGCAGCAGGAGGTGGTCAGCTGGGCCTGCTGCCAGGAGAAGGAGGGCTTCTGGTTGGGACGTGGAGAACTGCAGCTGCAGGTCTATGTCAGTCAGAACCATGGCCACAGTCACCTCCAGGTGGTTCTCACCAAAGAAGGAAGCTGTGTGAGAGAGGGAGCTGTGGTCAAGGCTCAGATTCTTGCCTGGAGGAGGCGAGGTGCTGCAGGGAGGGATGGGTGGGTTGCAGAAAGGGG-------TCCGTGCTGGTGCACCCTCATGGTTCTGCTATATGATGCTG-CCTCTGAGCACTGCCCAGATC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95277728 965 + 121039945 ctggcacaaatttggaataagaccctgggttcttaaactcttcatggcttaggggaagacccaagaa--agccacaagactccttgctaacaaagctcgtggtgtcttgaaggatgaaatggaa--aa---atgaggaagccg-----aggcagtactggtgcTGTTACTGTTGTGGACAG-ACCG------TGGTGCT--GCAGAGAAATT------GGTGCAGTGCCACAGGGAT---GCACAG----GGgtcatgggggc-cc----------------------------------------aggag---------ggggcctagccca---------------------------ggaggaggg--gatgcccacactaagacttcaaggagaggctggagttgggcatgtgcagggaacgg---gagaggcaagcacctggcagaag-gagtgtac--atcc--agagcctggcagcaagcgactgtaagatggccaggaact-gaaagcagttcagtgcggtc-agagcacaaaggaccagcgaggggttgtggtg----ggaaacatggttggagggagccagtgggcagagccagttcatgaagGATTTACCATTTCTGGGCTGC---TGCTGcccatcccacagtggagaacttaaga-ccccaagataaaagtgacttac--acaaggtcacacggccagctggggttcactcaaagctagagaaggaatccc--accccgaatcccgccgaga------------tctcAGGGGG--ACGTCACTCACCTGCAGGCGTCCAGAGTAGAGCTGCAGCAGGAGGTGGTCAGCTGGGCCTGCTGCC---AGAAGGAGGGCTTCGGGCTGGAATGTGGAGAACTGCAGCTGTAGGTGTTTGTCAGTCAGAGCCGTGGCCACAGGCACCTCCAGGTGGTTCTCACCTAAGAAGGAAGCTGTGT--GAGAGGGAGCTGTGGTCAAGGCTCAGACTCTTGCCTGGAGGAGGCGAGGTGCCGCAAAGAGGGAGGGGTGGGTTGCAGAAAGGGG-------TCCATGCTGGCGCAACCTCATGGTTCTGCTATATGGTGCTG-CCTCTGAGCACTGCCCGGGTC
i nomLeu3.chr6              C 0 I 1289
s macFas5.chr7               65367974 955 + 171882078 ctgccccaaatttggactaagaccctgggttcttaaactcttcatggtatgggggaagactcaagaaggagccacaagactccttgataataaagcttgtggtgtcttgaaggatgaaatggaa--aa---at---gaaGCTG-----AGGCAGTACTGGTGCTGTTACTGTCGTGGACAG-ACAG------TGGTAGT--GCAGAGAAATT------GGTGCAGTGCCACAGGGAT---GCACAG----GGgtcatgggggc-tc----------------------------------------aggag---------ggggcctcgccca---------------------------ggaggaggg--gacgctcactctgaaacttcaaggacaggctagagttaggcaggtgcagggaatga---gtgaggcatgcacctggcagaag-cagtgtagtgacca--aaggcctggcagcaagtgaccataagatggccaggaact-gaaagcagttcagtgcagtc-agagcacaaatggccagggagggcttgtggtg----ggaaacatggttggagggagctggtgggcagagccagttcaggaagGATTTACCATTTCTGGGCTGC---TGCTGcccatcccatggtggagaacttgaga-ccccaagataaaagtgacttac--acaaggtcacacagccagctggggt----tcaaagctagagaaggaatctc--acccc------------ca------------tcccagGGGG--ATATCACTCACCTGCAGGCATCCAGAGTAGAGCTGCAGCAGGAGGTGGTCAGCTGGGCCTGCTGCCAGGAGAAGGAGGGCTTCAGGTTGGGAGGTGCAGAACTGCAGCTGTAGGTCTATGTTGGTCAGAGCCGTGGCCACAGGCACCTCCAGGTGGTTCTCACCGAAGAAGGAAGCTGTGTGAGAGAGGGAGCTCTGGTCAAGGCTCAGATTCTTGCCTGGAGGAGGCGAGGTGCCATAGAGAGGGACGGGTGGGTTGCAGAAAGGGG-------TTCATGCTGGTGCACCCTCATGGTTCTGCTATATGGTGCTA-CCTCTGAGCACTGCCCAGATC
i macFas5.chr7              I 12232 C 0
s chlSab2.chr26              50422056 965 -  58131712 ctggcacaaatttggaataagaccctgggttctt-aactcttcatggtttgggagaagactcaagaaagagccacaagactcctcactaacaaagcttgtggtgtcttgaaggatgaaatggaa--aaaggag---gaagctg-----aggcagtactggtgcTGTTACTGTCGTGGACAG-GCAG------TGGTGCT--GCAGAGAAATT------GGTGTAGTGCCACAGGGAT---GCACAG----GGgtcctggggac-cc----------------------------------------aggag---------ggggcctcaccca---------------------------ggaggaggg--gatgtccacactgagacttcaaggagaggctggagttaggcatgtgcagggaatgg---gtgaggcacgcacctggcagaag-gagtgtagtgacca--aaggcctggcatcaagcgactgtaagatggccgggaact-gaaagcagttcagtgcggtc-agagcacaaagggccagcaagggcttgtggtg----ggaaacgtggttggagggagccagtgggcagagccagttcatgaaggatttaccatttctaggctgc---tgCTGCCCATCCCACAGTGGAGAACTTGAGA-CCCTAAGATAAA--------AC--ACAAGGTCCCACAGCCAGCTGGGGTTCACTCAAAGCTAGAGAAGGAATCCC--ACCCT------------GAATCCCACCCAGATCCCAGGGGG--ACGTCACTGACCTGCAGGCGTCCAGAGTAGAGCTGCAGCAAAAGGTGGTCAGCTGGGCCTGCTGCCAGGAGAAGGAGGGCTTCGGGCTGGGACGTGGAGAACTGCAGCTGTAGGTCTATGTCGGTCAGAGCTGTGGCCACAGGCACCTCCAGGTGGTTCTCACCGAAGAAGGAAGCTGTATGAGAGAGGGAGCTGTGGTCCAGGCTCAGATGCTTGCCTGGAGGAGGTGAGGTGCCACAAAGAGGTACCGGTGGGTTGAAGAAAGGGG-------TCCATGCTGGCGCACCCTCATGGTTCTGCTATATGGTGCTG-TCTGTGAGTACTGTCTGGATC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       359976 955 -   1458659 ctgccccaaatttggactaagaccctggattcttaaactcttcacggtatgggggaagactcaagaaggagccacaaaactccttgataataaagcttgtggtgtcttgaaggatgaaatggaa--aa---at---gaaGCTG-----AGGCAGTACTGGTGCTGTTACTGCTGTGGACAG-acag------tggtagt--gcagagaaact------ggtgcagtgccacagggat---gcacag----gggtcatgggggc-tc----------------------------------------aggag---------ggggcctcgccca---------------------------ggaggaggg--gatgctcactctgaaacttcaaggagaggctagagttaggcaggtgcagggaatga---gtgaggcacgcacctggcagaag-cagtgtagtgacta--aaggcctggcagcaagtgaccataagatggccaggaact-gaaagcagttcagtgcagtcaagagcacaaatggccagggagggcttgtggtg----ggaaacatggttggagggagccggtgggcagagccagttcaggaagGATTTACCATTTCTGGGCTGC---TGCTGcccatcccacggtggagaacttgagg-ccccaagataaaagtgacttac--acaaggtcacacagccagctggggt----tcaaagctagagaaggaatctc--acccc------------ca-------------tcccggGGG--ATGTCATTCACCTGCAGGCGTCCGGAGTACAGCTGCAGCAGGAGGTGGTCAGCTGGGCCTGCTGCCAGGAGAAGGAGGGCTTCAGGTTGGGAGGTGGAGAACTGCAGCTGTAGGTCTATGTCGGTCAGAGCCGTGGCCACAGGCACCTCCAGGTGGTTCTCACCGAAGAAGGAAGCTGTGTGAGAGAGGGAGCTCTGGTCAAGGCTCAGATTCTTGCCTGGAGGAGGCGAGGTGCCATAGAGAGGGACGGGTGGGTTGCAGAAAGGGG-------TTCATGCTGGTGCACCCTCATGGTTCTGCTATATGGTGCTA-CCTCTGAGCACTGCCCAGATC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3801986 952 -   4111199 cTGCCCCAAAtttggactaagaccctgggttcttaaactcttcacggtatgggggaagactcaagaacgagccacaagactccttgataataaagcttgtggtgtcttgaaggatgaaatggaa--aa---at---gaaGCTG-----AGGCAGTACTGGTGCTGTTACTGTCGTGGACAG-acag------tggtagt--gcagagaagct------ggtgcagtgccatagggat---gcacag----gggtcatgggggc-tc----------------------------------------aggag---------ggggcctcgccc------------------------------aggaggg--gatgctcacactgaaacttcaaggagaggctagagttaggcaggtgcagggaatga---gtgaggcatgcagctggcagaag-cagtgtagtgacca--aaggcctggcagcaagtgaccataagatggccaggaact-gaaagcagttcagtgcagtc-agagcacaaatggccagggagggcttctggtg----ggaaacatgattggagggagccgatgggcagagccagttcaggaagGATTTACCATTTCTGGGCTGC---TGCTGcccatcccatggtggagaacttgaga-ccccaagataaaagtgacttac--acaaagtcacacagctagctggggt----tcaaagctagagaaggaatctc--acccc------------ca------------tcccagGGGG--ATGTCACTCACCTGCAGGCGTCCGGAGTAGAGCTGCAGCAGGAGGTGGTCAGCTGGGCCTGCTGCCAGGAGAAGGAGGGCTTCAGGCTGGGATGTGGAGAACTGCAGCTGTAGGTCTATGTCGGTCAGAGCCGTGGCCACAGACACCTCCAGGTGGTTCTCACCAAAGAAGGAAGCTGTGTGAGAGAGGGAGCTCTGGTCAAGGTTCAGATTCTTGCCTGGAGGAGGCGAGGTGCCATAGAGAGGGACGGGTGGGTTGCAGAAAGGGG-------TTCGTGCTGGTGCACCCTCATGGTTCTGCTATATGGTGCTG-CCTCTGAGCACTGCCCAGATC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             399067 982 -   3282555 ctgccccaaatgtggactaagaccctgggttcttaaactcttcatggtttgggggaagactcaagaaagagccacaagactccttgctaacaaagcttgtggtgtcttgaaggatgaaacgggg--aa---atgaggaagctg-----aggcggtgctggtgcTGTTACTGTCATGG-----------------------------GAAATT------GGTGCCATGCCACCGAGAT---GCACGG----GGGTAGTGGAGGC-CCGGGAGGGGACCTagctcaggaggaagggacctagcccaggaggag---------gggacctagccca---------------------------ggaggaggg--gatgctcacactgagacttcaaggagaggctggagttaggcaggtgcagggaatgg---gtgaggcgtgcacctggcggaag-tggtgtggtgacta--gaggcctggcaacaagcggctgtaagatggccagaaact-gaaagcag-tcagtgcagtc-agagcacaaagggccagcgagggcttgtggtgggtaggaaacatggctgga-gtagccggcgggcagagccagttcgtgaagGGTTTACCATGTCTGGGATGC---TGCTGcccatctcacagtggagaactcgagacccccaagatataagtgacctac--acaaggtcacacagccagctgcggttcactcaaagctagagaaagaaacct--acccc------------ga------------tcccagGGGG--ACGTCACTGACCTGCAGGCGTCCAGAGTAGAGCTGCAGCAGGAGGTGGTCAGCTGGGCCTGCTGCCAGGAGAAGGAGGGCGTCGGGCTGGGACGTGGAGAACTGCAGCTGTAGGTCTATGTCGCTGAGAGCCGCGGCCACTGGCAGCTCCAGGTGGTTCTCACCGAAGAAGGAAGCTGTATGAGAGACGGCGCTGTGGTCAAGGCTCAGACTCTTGCCCGGAGGAGGCCAGGTGCCGCAGAGAGGGACGGGTGGGTTGCAGGGAGGGG-------TCCATGCTGGCGCGCCCTCATGGTT---CTATATGGTGCTG-CCTCTGAGCACTGCCCAGATC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       188542 965 -   1024465 ctgctccaaatttggactaagaccctgggttcttaaactcttcatggtttgggggaagactcaagaaagagccacaagactccttgctgacaaagcttgtggtgtcttgaaggatgaaatgggg--aa---atgaggaagctg-----aggcagtactggtgcTGTTACTGTCATGGACAG-ACAG------TGGTGCT--ACAGAGAAATT------GGTGCAGTGCCACAGGGAT---GCACGG----GGGTAGtgggggc-cc----------------------------------------aggag---------gggacctagccca---------------------------ggaggaggg--gatgctcacactgagacttcaaagagaggctggagttaggcaggtgcagggaatgg---gtgaggcatgcacctggcagaag-tggtgtggtgacca--aaggcctggcagcaagcgactgtaagatggccagaaact-gaaagcagttcagtgcagtc-agagcacaaagggccagcgagggcttggggggggtaggaaacatggctgga-ggagccggcgggcagagccagttcatgaagGATTTACCATTTTTGGGATGC---TGCTGcccatctcacagtggagaacttgagacccccaagataaaagtga-ctac--acaaggtcagacagccagCTGCAGTTCACTCAAAGCTAGAGAAAGAAACCT--ACCCC------------GA------------TCCCAGGGAG--ATGTCACTGACCTGCAGGCGTCCAGAGTAGAGCTGCAGCAGGAGGTGGTCAGCTGGGCCTGCTGCCAGGAGAAGGAGGGCTTCGGGCTGGGACGTGGAGAACTGCAGCTGTAGGTCTATGTCGGTGACAGCCGTGGCCACAGGCACCTCCAGGTGGTTCTCACCGAAGAAGGAAGCTGTATGAGAGAGGGCGCTGTGGTCAAGGCTCAGACTCTTGCCTGGAGGAGGCCAGGTGCTCCGGAGAGGGACGGGTGGGTTGCAGGGAGGGG-------TCCATGCTGGCGCACCCTCATGGTTCCCCTGTATGGTGCTG-CCTCTGAGCACTGCCCAGATC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       989837 966 +   3745603 ctgccccaaatttggactaagaccctgggttcttaaactcttcatggtgtgagggaagactcaagaaagagccacaagactcattgctaacaaagcctgtggtgtcttgaaggatgaaatgggg--aa---atgaggaagCCG-----AGGCAGCACTGGTGCTATTACTGTCATGGACAG-ACAG------TGGTGCG--GCAGAGAAATT------GGTGCAGTGCCACCGGGAT---GCACAG----GGGTAGtgggggc-cc----------------------------------------aggag---------gggacctagccca---------------------------ggaggaggg--gatgctcgcactgagacttcaaggagaggctggagttaggcaggtgcagggaatgg---gtgaggcacgcacctggcagaag-aagtgtggcgacca--aaggcctggcagcaagcgactgtaagatggccagaaact-gaaagcagttcagtgcagtc-tgagcacaaagaaccagtgagggcttgtggtgggtgggaaacatggctgga-ggagccggcgggcagagccagttcatgaagGATTTACCATTTCTGGGATGC---TGCTGcccatttcacaatggagaacttgagacccccaagataaaagtgacctac--acgaggtcacacagccagctgtggttcactcaaagctagagaaagaaacct--acccc------------ga------------tcccagGGGG--ACGTCACTGACCTGCAGGCGTCCAGAGTAGAGCTGCAGCAGGAGGTGGTCAGCTGGGCCTGCTGCCAGGAGAAGGAGGGCTTCGGGCTGGGACGTGGAGAACTGCAGCTGTAGGTCTATGTCAGTGAGAGCGGTGGCCACAGGCACCTCCAGGTGGTTCTCACCGAAGAAGGAAGCTGTATGAGAGAGGGTGCTGTGGTCAAGGCTCAGACTGTTGCCTGGAGGAGGCCAGGTGCTGTGGAGAAGGACAGGTGGGTTGCAGGGAGGGG-------TCCATGCTGGCGCACGCTCACGGTTTTCCTATATGGTGCTG-CCTCTGAGCACTGCCCAGATC
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67710801 877 - 124595110 ----------------ctaagatcctggattcctaaacattttatgattagggggaagactcaagagacagctaaatgaccccttg-----------------gtcttaaagcatgcaataagagcaa---aa---gagggtggtggtagatgataaaggcattgttactatctcagattgtaccA------CCTTATT--ACAGAGGA----------------------CGGGGG---GAGGGG----GAGTCCTAG-----TC----------------------------------------AGGTGAGTAGAACAGGGATACTACCTG---------------------------GGAGCAGGGATACTCCTCACACATAGATGTCAAGGAGAGG---GGACTGGTCAGGCATGGGGAAGAGAAAGAAAGGCAGGCAAAAGAGAAAAGCCAGGGTAGTAGTGAGGAAAGCCTGTTAGTCAGATACTACGAGGAGGT---GGACA-GAGAA------AGCTCAGTC-------CAGATGGTCAACTAGGGGCGACGAAG----AGAAGTGAGACCCGAGACAGCTCGTAGGCAGAGCCACTGCACCAGGAGCTCAC----TCTGGGAAGT---TGCTAGCCA-CCCATGGCAGACAAACCAAGA-CCCAAGGGCAGAGGTGACTTGC--ATGAGGTTGCACAGCCAAAGGCGAGGCCTCCCAACCTGCAGAAGGGATCTCTAGCCCT------------GT------------TCCC--GGGT--GTGCCACTCACCTGGAGGCATCCTGAGTGGAGCTGGAGCAAGAGATGGTCATCTTGGCCTGCTGCCAAGAGGAGCAGGGCTTCGGGCTGGGATGTGGAGAACTGGAGCAGCAGGTCTACTCTGGTCAGAGCTGAGGGCACGGGCACCTCCAGGTGGTTCTCCCCGAAGAAGGAGGCTG-GTGAGAGAGGGAGCTGTGGTCAAGG-TCAGGCTCCGGCCAGGAGGAGGTTAGGGACCGTAGAGACAGACAGATGGGCTACAGGGGAGGGAAGGGCTTCTATGTTGACATGCCC-CATGGCTCT------------------------------------
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38479902 829 +  40214260 -tttcccgaatttggacggagacctcaggttctcaaattcgttatggttaagggggagcctcagg--ggagccaggaggctccttgctgataaagctagcgg-ggctggcaggacgaaatggga--aa---atggagaggctt-----tggcgatactggt--CGTTACCATCACGGACAG-ATGGGGtgaccggtgctcagcaggaggctcacaggggctgcagggcc--caggatagagcaccc----agcccaggggagtgcc----------------------------------------agggg---------gtaggtacctcct---------------------------gggggaagg--gatgtctacgctgggacttgaaggCGAGGC--------GGGGCGTGCGGGGAGCGA---GAG---------CCTGGCTGGAC-CAGCG-----------CAGGCC------------------------------------------------GCAGTG-AGGG------GGGGCGGCCAGGGCTGGTGGTG----GGCAGTGTGGGTGGA--GGGCTGCGGGGCACAGCCGGCGCACCAGGGAGTCACACCTTGGGAGACGC---TGTCCTTCACCTCGTGGCAGGGACCTAGAGA-CCTCGGGGCGAAAGGGGCTCAC--ACAAAGTCA-----CCGGCTGGGGGCCGTGCCAAGCTAGAGG-----------GGTCC------------AG---------------CAGGGAG--AGGCCACTGACCTGCAGGTATCCGGAGTGGAGCTGCAGGAGGAGGTGGTCAGCCTGGCCTGCTGCCAGGAGGAGCAGGGCTTCGGGCTGGGACGTGGAGAATTGTAGCCGGAGGTCTATGTTGCTCAGAGCTGTGGTCACCGGCACCTGCAGGTGGTTCTCCCCAAAGAAGGAGGCTGTGTGAGAGACGGAGCT--------GGGTCAGTCCCTTGCCTGGAGGAGGAGAGGTGCTGCGGA-----------------CGATGCGGGT-------TTTGTGCTGGCGCAGCTTCACGGTCCTG---------GCTG--------GCACTGCCCC----
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             839620 941 +   1040364 ------------------------cagggttctcaaagacctcatga---gcggtaatcctccagacagaaccagaaaactccttg---------cttgtggtggct-gagtgagcaaatggaa--ag---agaaggacgctg-----tggctttaCGGGTGCTGCCACTATCATCGacag-ataa------tggcaat--tcagggtgact------ggtgctctgccagagggat---gcctgggtgtgtgtaagcagagc-cc----------------------------------------aggag---------agggccccatccaggtgagtgccaggtgaggacacttcctggaggaagg--gacacccacagggagatctcaggg-gaggctggagcca-----gtggacggaaccc---atga-----------ggcagggg-gagta-agtgagcc--aagg-ctggtggccagagaccccgagatgcccagggcccagaaggtggctcagcgtggtc-agagcaaaaggggccagctgggg-ttgtg-tg----agaagggaggttgaggcgcacaggagagctgagccagttcatga-ggATTCACACTTTATGGGGTGCTGGTGGTGTCCATTTCACAGGTGCGAACTCGAGA-GCCCAAGGTGACAGGGACTTTCGAATAAGGTCCCACAGC-AGTGGGGGGCCATTCAAAGCCAGAGAAGAGATCCT--GTCCT------------TG------------ACCCTGGGGGGAATGTCACTGACCTGCAGGCGTCCAGAGAAGAGCTGCAGCAGGAGGTGGTCAGCTGGGCCCGCTGCCAAGAGCAGGAAAGCTTCGGGCTGGGCCGTGGAGAACTGCAGCCGGAGGTCGATGTCAGTCAGGGTCGTGGCCACAGGCACCTCCAGATGGCTCCCACCGAAGAAGGAGGCTGTGTGAGAGAGGGAG-TGTGGTCGAGGCTCGGCCTCTTGTGTGGAGGAGGATGGACACCTCGGAGATGGCCGGGTAGGCTGCAGGCAGGGG------CTCCATGCCGGCCCACCCTT-TCGCTCTCCTATGTGGGGCTGCCCTGTGGACATCAGCCAGGTC
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=4186715.000000
s hg38.chr15_KI270850v1_alt    108770 776 +    430880 CCAGCATTTCCTT----GGTCCTGGCACC---AGAAGGCACAGCCTCACCTTGTGTCCAGCCCAGACCTTGACTTGGCAGGAGGTCAGACCCAGAAATTCCCAGCAACTCAGGTCTCCTCCTTGGAG---GTTCCTGGAGCCAGAGGCCTCTGCCAGCTCTGACTCACCTCCCCTGGGCCCCAGAGGAGTCTCCCTCCCAGGTCTGG---CTCCCCGACCTGGCCCAAAGGGAAA-CATCACTGGCCTGATCACCTGGCTTGGTGGTCACAGCCCTGAGGAATGGAGTTTCTGGAGAATCACCACCAGGCCAGATCGATCCCTGCTCAGATTCCTTCTCCTAAGTGCCCTTGTGCTTGGGCTCCTGTGCAGCACCTGCCGTG-CCATGCCCCACCTCCATGGGTTGGCTGGGGCCACAGCTGGGATCTGGGGGTGATGTCA----GTGCAGCCCACCTATCCCTGCTTCTCCCTCAGGCCATTCTTCCAGCTGCCATTGAGGGTGGGG------GCAGGAGCTTATTGGCCTGAGTTTGCCAAGGAGT--AAAGGCTCTCAGGCCAGATGGGGACCATATGCAGTGTCAAAC-CAAAGTGGGCCCACACTTCCTCCACTACCCCTGCTGTTGCTTCCTGCTAGAGAGCTATTCACAGTCCCCGCTGAGCAGTCAGATCCGGCCCCATTGTTTCC-ACCGTGGCCAAGGAACCAGGGATGAGAACAGCTCAGCTCCCAACCTCCCCAGGCCACCACTCAGTCTGAGGCTG------AAGACAGGGCCTAGAAGGGGCTGAGGGTCTGCTGAG
s panTro5.chr15              17346006 776 -  83230942 CCAGCATTTCCTT----GGTCCTGGCACC---AGAAGGCACAGCCTCACCTTGTGTCCAGCCCAGACCTTGACTTGGCAGGAGGTCAGACCCAGAAATTCCCAGCAACTCAGGTCTCCTCCTTGGAG---GTTCCTGGAGCCAGAGGCCTCTGCCAGCTCTGACTCACCTCCCCTGGGCCCCAGAGGAGTCTCCCTCCCAGGTCTGG---CTCCCCGACCTGGCCCAAAGGGAAA-CATCACTGGCCTGATCACCTGGCTTGGTGGTCACAGCCCCGAGGAATGGAGTTTCTGGAGAATCACCCCCAGGCCAGATCGATCCCTGCTCAGATTCCTTCTCCTAAGTGCCCTTGTGCTTGGGCTCCTGTGCAGCACCTGCCGTG-CCATGCCCCACCTCCATGGGTTGGCTGGGGCCACGGCTGGGATCTGGGGGTGATGTCA----GTGCAGCCCACCTATCCTTGCTTCTCCCTCAGGCCATTCTTCCAGCTGCCATTGAGGGTGGGG------GCAGGAGCTTATTGGCCTGAGTTTGCTAAGGAGT--AAAGGCTCTGAGGCCAGATGGGGACCATATGCAGTGTCAAAC-CAAAGTGGGCCCACACTTCCTCCACTACCCCTGCTGTTGCTTCCTGCTGGAGAGCTATTCACAGTCCCCGCTGAGCAGTCAGATCCGGCCCCATTGTTTCC-ACCGTGGCCAAGGAACCAGGGATGAGAACAGCTGAGCTCCCAACCTCCCCAGGCCGCCACTCAGTCTGAGGCTG------AAGACAGGGCCTAGAAGGGGCTGAGGGTCTGCTGAG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        31966 774 -    378907 CCAGCATTTCCTT----GGT-CTGGCACT---AGAAGGCACAGCCTCACCTTGTGTCCAGCCCAGACCTTGACTTGGCAGGAGGTCAGACCCAGAAATTCCCAGCAACTCAGGTCTCTTCCTTGGAG---GTTCCTGGAGCCAGAGGCCTCTGCCAGCTCTGACTCACCTCCCCTGGG-CCCAGAGGAGTCTCCCTCCCAGGTCTGA---CTCCCCGACCTGGCCCAAAGGGAAA-CATCACTGGCCTGATCACCTGGCTTGGTGGTCACAGCCCTGAGGAATGGAGTTTCTGGAGAATCACCCCCAGGCCAGATTGATCCCTGCTCAGATTCCTTCTCCTAAGTGCCCTTGTGCTTGGGCTCCTGTGCAGCACCTGCCGTG-CCATGCCTCACCTCCATGCATTGGCTGGGGCCACGGCTGGGATCTGGGGGTGGTGTCA----GTGTGGCCCACCTATCCCCACTTCTCCCTCAGGCCATTCTTCCAGCTGCCATTGAGGGTGGGG------GCGGGAGCTTATTGGCCTGAGTTTGCCAAGGAGT--AAAGGCTCTGAGGCCAGATGGGGACCATATGCAGTGTCAAAC-CAAAGTGGGCCCACACTTCCTCCATTACCCCTGCTGTTGCTTCCTGCTGGAGAGCTATTCACAGTCCCCGCTGAGCAGTCAGATCCAGCCCCATGGTTTCC-ACCGTGGCCAAGGAACCAGGGATGAGAACAGCTGAGCTCCCAACTTCCCCAGGCCACCACTCAGTCTGAGGCTG------AAGACAGGGCCTAGGAGGGGCTGAGGGTCTGCTGGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95279982 779 + 121039945 CCAGCATCTTCTT----AGTTCCGGCACC---AGAAGGCACAGCCTTACCCTGTGTCCAACCCAGACCTTGACTTTGCAGGAGGTCAGACCCAGAAATTCCCAGCAACTCAGGGCTCCTCCTTGGAGGAAGTTCCTGGACCCAGAGGCCTCCGCCAGCTCTGACTCGCCTCCCCTGGGCCCCAGAGGAGTCTCCCTCCCGGGTCTGG---CTCCCCAACCCGGCCCAAAGGGAAC-CATCACTGGCCTGATCACCTGGCTTGGTGGTCACAGCCCCGAAGAATGGAGTTTCTGGAGAATCACCCCCAGTCCAGACTGATCCCTGCTCAGATTCCTTCTCCTAAGTGCCCTTGTGCTTGGGCTCCGGTGCAGCGCCTGCTGTG-CCATGCCCCGCCTCCATGGGCTGGCTGGGGCCACGGCTGGGATCTGGGGGTGGTGTCA----GTACGGCCCACCTATCCCCGCTTCTCTCTCAGGCCATTCTTCCAGCTGCCATTGAGGGTGGGG------GAGGGAGCTTATTGGCCTGAGTCTGCCAAGGAGC--AAAGGCTCTGAGGCCAGATGGAGACCATGTGCAGTGTCAAAC-CAAAGTGGGCCCACACTTCCTCCATTACCCCTGCTATTGCTTCCTGCTGGAGAGCTATTCAGAGTCCCCGATGAGCAGTCAGATCTGGCCCCATTGTTTCC-ACCATGGCCAAGGAACCAGGGATGAGAACAGCTGAGTTCCCAACTTCCCCAGGCCACTACGCAGGCTGAGGCTG------AAGACAGGGCCTGGAAGGGGCTAAGGGTCTGCTGGG
i nomLeu3.chr6              I 1289 I 10
s macFas5.chr7               65368929 776 + 171882078 CCAGCATTTCCTT----GGTCCTGGCACC---AGAAGGCACAGCCTCACCTTGTATCCAGTCCAGACCTTGACTCTGCAGGAGGTCAGACCCAGAAATTCCCAGCAACTCAGGTCTCCTCCTTAGAG---ATTCCTGGAGCCAGAGGCCTCCGCCAGCTCTGACTCACCTCCCCTGGGCCCCAGAGGAGTCTCCCTCCCAGGTCTGG---CTCCCTGACCCAGCCCAAAGGGAAA-CATCACTGGCCTGATCACCTGGCTTGGTGGTCACAGCCCCGAGGAATGGAGTTTCTGGAGAATCACCCCCAGTCCAGACTGATTCCTGCTGATATTCCTTCTCCTAAGTGCCCTTGTGCTTGGGCTCCTGTGCAGCACCTGCCGTG-CCATGCCCTGCCTCCATGGATTGGCTGGGGCCATGGCTGGGATCTGGGGATGGTTTCA----GTGGAGCCCACCTATCCCCGCTCCTCTATCAGGTCATTCTTTCAGCTGCCATTGAGGGTGGGG------GTGGGAGCTTATTGGCCTCAGTTTGCCAAGGAGC--AAAGGCTCTGAGGCCAGATGGGGACCATATGCAGTGTCAAAC-CAAAGTGGGCCCACACTTCCTCCATTAACCCTGCTACTGCTTTCTGCTGGAGAGCTATTCACAGTCCCTGCTGAGCAGTCAGATCCAGCCCCATTGTTTCC-ACCATGGCCAAAGAACCAGGAATGAGAACAGCTGAGCTCCCAACTGCCCCAGGCCACCACTCAGGCTGAGGCTG------AAGACAGGGCCTAGGAGGGGCTGAGGGTCTGCAGGG
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50423021 773 -  58131712 CCAGCATCTTCTT----CGTCCTGGCACC---AGAAGGCACAGCCTCACCTTGTGTCCAG-CCAGACCTTGACTTTGCAGGAGGTCAGACCCAGAAATTCCCAGCAACTCAGGTCTCCTCCTTGGAG---GTTCCTGGAGCCGGAGGCCATTGCCAGCTCTGACTCACCTCCCCTGGGCCCCAGAGGAGTCTTCCTCCCGGGTCTGG---GTCCCCTACCCC-CTCAAAGGGAAA-CATCACTGGCCTGATCACCTGGCTTGGTGGTCACAGCCCCGAGGAATGGAGTTTCTGGAGAATCATCCCCAGTCCAGACTGATCCCTGCTCAGATTCCTTCTCCTAAGTGCCCTTGTGCTTGGGCTTCTGTGCAGTGCCCGCCGTG-CCATGCCCCGCATCCATGGGTTGGCTGGGGCCACGGCTGGGATCTGGTGGAGGTGTCA----GCATGGCCCACCTATCCCCAGTTCTCTCTCAGGCCATTCTTCCACCTGCCACTGAGGGTGAGG------GCGGGAGCTTATTAGCCTGAGTCTGCCAAGGAGC--AAAGGCTCTGAGGCCAGATGGAGACCATGTGTAGGGTCAAAC-CAAAGTGGGCCCACACTTCCTCCATT-ACCCTGCTATTGCTTCCTGCTGGAGAGCTATTCACAGTCCCCGATGAGCAGTCAGATCCAGCCCCATTGTTTCC-ACCATGGCCAAGGAACCAGGGATGAGAACAGCTGAGCTCCCAACTTCCCCAGGCCACCACGCAGGCGGAGGCTG------AAGACAGGGCCTGGGAACGGCTGAGGGTCTGCTGGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       360931 776 -   1458659 CCAGCATTTCCTT----GGTCCTGGCACC---AGAAGGCACAGCCTCACCTTGTGTCCAGTCCAGACCTTGACTTTGCAGGAGGTCAGACCCAGAAATTCCCAGCAACTCAGGTCTCCTCCTTAGAG---ATTCCTGGAGCCAGAGGCCTCCGCCAGCTCTGACTCACCTCCCCTGGGCCCCAGAGGAGTCTCCCTCCCAGGTCTGG---CTCCCTGACCCAGCCCAAAGGGAAA-CATCACTGGCCTGATCACCTGGCTTGGTGGTCACAGCCCCGAGGAATGGAGTTTCTGGAGAATCACCCCCAGTCTAGGCTGATTCCTGCTCATATTCCTTCTCCTAAGTGCCCTTGTGCTTGGGCTCTTGTGCAGCACCTGCCGTG-CCATGCCCTGCCTCCATGGATTGGCTGGGGCCATGGCTGGGATCTGGGGATGATTTCA----GTGGAGCCCACCTATCCCCGCTCCTCTATCAGGTCATTCTTTCAGCTGCCATTGAGGGTGGGG------GCGGCAGCTTATTGGCCTCAGTTTGCCAAGGAGC--AAAGGCTCTGAGGCCAGATGGGGACCATATGCAGTGTCAAGC-CAAAGTGGGCCCACACTTCCTCCATTAACCCTGCTACTGCTTTCTGCTAGAGAGCTATTCACAGTCGCAGCTGAGTAGCCAGATCCAGCCCCATTGTTTCC-ACCATGGCCAAGGAACCAGGAATGAGAACAGCTGGGCTCCCAACTGCCCCAGGCCACCACTCAGGCTGAGGCAG------AAGACAGGGCCTAGGAGGGGCTGAGGGTCTGCAGGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3802938 775 -   4111199 CCAGCATTTCCTT----GGTCCTGGCACC---AGAAGGCACAGCCTCACCTTGTGTCCAGTCCAGATCTTGACTTTGCAGGAGGTCAGACCCAGAAATTCCCAGCAACTCAGTTCTCCTCCTTAGAG---ATTCCTGGAGCCAGAGGCCTCCGCCAGCTCTGACTCACCTCCCCTGGGCCCCAGAGGAGTCTCCCTCCCAGGTCTGG---CTCCCTGACCCAGCCCAAAGGGAAA-CATCACTGGCCTGATCACCTGGCTTGGTGGTCACAGCCCCGAGGAATGGAGTTTCTGGAGAATCACCCCCAGTCCAGACAGATTCCTGCTGATATTCCTTCTCCTAAGTGCCCTTGTGCTTGGGCTCCTGTGCAGCACCTGCCGTG-CCATGCCCTGCCTCCATGGATTGGCT-GGGCCATGGCTGGGATCTGGGGATGGTTTCA----GTGCAGCCCACCTATCCCCACTTCTCTATCAGGTCATTCTTTCAGCTGCCATTGAGGGTGGGG------GCGGGAGCTTATTGGCCTCCGTTTGCCAAGGAGC--AAAGGCTCTGAGGCCAGATGGGGACCATATGCAGTGTCAAAC-CAAAGTGGGCCCACACTTCCTCCATTAACCCTGCTACTGCTTTCTGCTGAAGAGCTATTCACAGTCCCCGCTGAGCAGTCAGATCCAGCCCTATTGTTTCC-ACCATGGCCAAGGAACCAGGAATGAGAACAGCTGAGCTCCCAACTGCCCCAGGCCACCACTCAGGCTGAGGCTG------AAGACAGGGCCTAGGAGGGGCTGAGGGTCTGCAGGG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             400049 777 -   3282555 CCAGCATCTTCTTTCTCGGTCCTGGCACCGGAAGAAGGCACAGCCTCGCCTTGTGTCCAGCCCAGACCTTGACTTTGCAGGAGGCCAGACCCAGAAATTCCCAGCAACTCAGGTCTCCTCCTTGGAG---GTTCCTGGAGCCAGAGGCTTCTGCCAGCTCTGACTCACCTCCCCTGGGCCCCAGCGGCGTCTCTCTCCCACGTCTGG---CTCCCCTACCGGCTCCAAAGGAAAA-CATCACTGGCCTAATCACCTGGCTTGGTGGTCACAGCCCCGAGGAATGGAGTTTCTAAAGAACCACCTCCAATCCAGACTGATCCCTGCTCAGATTCCTTCTCCTACATGTCCGTGGGCT------CCTGTGCTGCGCTCGCCGTG-CCATGCCCCACCTCCACGGGTTGGCCGAGGCCACAGCTGGGATCTGGTGGTGGTGTCA----GTGTGGCCCATCTATTCTCGCTTCTCTCTCAGGCCATTCTTCCAGCTGCCATTGAGGGTGGGG------GCGGGAGTTTACTGGCCTGAGTCTGCCAAGGAGCA-AAAGGCTCTGAGGCCAGATGGAGACCATGTGCAGTGTCAGAC-CAAAGTGGACCCACACTTCCTCCATGACCCC-GCTATTGCTTCCTGCTGGAGGGCCAGTCACACTCCCCGCTGAGCAGTCAGATCCGGCCCCATTGTTTCC-ACCGTGGCCGAGGAATCAGGGATGAGAACAGCTGAGTCCTCAACTTCCCCAGGCCACCACTCAAGCCGAGGCTG------AAGACAGGACCCGGGAGGGGCTGAGGGGCTGCTGGG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       189507 769 -   1024465 CCAGCATCTTCTTTCTCGGTCCTGGCACCGGAAGAAGGCACAGACTCGCCTTGTGTCCAGCCCAGACCTTGACTTTGCAGGAGGCCAGACCCAGAAATTCCCAGCAACTCAGGTCTCCTCCTTGGAG---GCTCCTGGAGCCAGAGGTTTCTGCCAGCTCTGACTCACCTCCCCTGGGCCCCAGCGGCGTCTCTCTCCCACGTCTGG---CTCCCCTACCGGCTCCAAAGGAAAA-CATCACTGGCCTAATCACCTGGCTTGGTGGTCACAGCCCCGAGGAATGGAGTTTCTAAAGAACCACCTCCAATCCAGACTGATCCCTGCTCAGATTCCTTCTCCTTCATGTCCTTGTGCT-------------TGGGCTCACCGTG--CATGCCCCACCTCCACGGGTTGGCCGAGGCCACAGCTGGGATCTGGTGGTGGTGTCA----GCATGGCCCATCTATTCCCGCTTCTCTCTCAAGCCATTCTTCCAGCCGCCATTGAGGGTGGGG------GCGGGAGTTTATTGGCCTGAGTCTGCCAAGGAGC--AAAGGCTGTGAGGCCAGATGGAGACCATGTGCAGTGTCAGAC-CAAAGTGGACCCAAACTTCCTCCATGACCCCAGCTATTGCTTCCTGCTGGAGAGCTATTCACACTCCCCGATGAGCAGTCAGATCCGGCCCCATTGTTTCC-ACCGTGGCCAAGGAATCAGGGATGAGAACAGCTGAGTTCCCAACTTCCCCAGGCCACCACTCAAGCTGAGGCTG------AAGACAGGGCCTGGGAGGGGCTGAGGGGCTGCTGGG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       990803 783 +   3745603 CCAGCATCTTCTTTCTCAGTCCTGGCACCGGAAGAAGGCACAGCCTCGCCTTGTGTCCAGCCCAGACCTTGACTTTGCAGGAGGCCAGACCCAGAAATTCCCAGCAACTCAGGTCTCCTCCTTGGAG---GTTCCTGGAGCCAGAGGCTCCTGCCAGCGCTGACTCACCTCCCCTGGGCCCCAGCGGCGTCTCTCTCCCACGTCTGG---CTCCCCTACCCGCTCCAAAGGAAAA-CATCACTGGCCTAATCACCTGGCTTGGTGGTCACAGCCCCGAGGAATGGAGTTTCTAAAGAACCACCTCCAATCCAGACTGATCCCTGCTCAAATTCCTTCTCATACATGTCCTTGCGCTTGGGCTCCTGTGCAGCGCTTGCCGTG-CCATGCCCCACCTCCACGGGTTGGCCGAGGCCACAGCTGGGATCTGGTGGTGGTGTCA----GCGTGGCCCATCTATTCCCGCTTCTCTCTCAGGCCATTCTTCCAGCTGCCAGTGAGGGTGGGG------GCGGGAGTTTATTGGCCTGAGTCTGCCAAGGAGC--AAAGGCTCTGAGGCCAGATGGAGACCATGTGCAGTGTCAGAC-CAAAGTGGGCTCAAACTTCCTCCATGACCCCCGCTATAGCTTCCTGCTGGAGAGCTATTCACACTCCCCGATGAGCAGTCAGATCCGGCCCCATTGTTTCC-ACTGCGGCCAAGGAATCAGGGATGAGAACAGCTGAGTTCCCAACTTCCCCAGGCAACCACTCAAGCTGAGGCTG------AAGACAGGGCCTGGGAGGGGCTGAAGGGCTGCTGGG
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67711678 598 - 124595110 --------------------------------ATGTGGCACAGCCT--------------------------------AGGGGCTCG----TTAAGATTCCCA-CTATTCAAGTTTGCTT-----GG---GTTCCTGAAGCCACAGGTTCCCGCCA--------------CCTTTGGGCCCCAGC-GAATGTCCATCCTGGATCTGGTCTCTCCCTATC----------------------TTGTCATGATCATCTGGT-------------------GGGGGGGACTCTC-------------ACAATGAAGGCTGATCCCTGACCACAGT-CTTCTCCTAGG-----------GTGGGCTCCT----------TGCCACGACCGCACTTTATCTCTGTGT-TTTGCTG----------TGGAGCCTGATGGTGGTGGTA-----TGCAGGCAGGTCATTT---CTTCTCT--------ATTTTCTTAG-TGCCTGTAGGGACGGGGTGGGGTGGGGCCGTTTATTGCTCAGAGCCTGCCAAGGAGC--AAAGGCTCCCAGGCC-GATGGGAAGCACGTGCGGTGTCAGACTCAAAGCCGGCCAAACTGTGCTCCACCACTCC-GCAATTGCTTCCTGCCTCAGCACCACCACGGGTCCCTGGTGAGTACTCACATCCGGCCTCTCTGTTTCCAAACATGCCTAAGGAGCCAGGGAAGACAGCAGCAGAGATCCC--CTTCCCTA-------ACCCAAGCCAGGGATGTCTCCAAATACAAGGCTGGGGACGCACTACAGGCCTGC----
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38480731 717 +  40214260 --CTCACCTGTCC----AGTCCTGGTGCC---GGAAGGTGCAGTCTCACCTTGTGTGTATCCCAGGCCTTAGCTCCAAAGGAGGCCAGACCT----ATTCCAAGCAAC-CAGGTTTCCTCCTCAGGA---GTTCCTGGGGCCTGGGCCCTCTGACAGCTCTGGCTCTCCTCCCCGGGGCCCCAGAGGATTCTCCATCCTGGGCCGAG---TTCCTC--TTGGGCCTAATGGAAAACCATCCCTGGCCGGGTCACCTGGCCTGGTGGTCTTTGCCCCCAGGAATGGGATTCCAGGAGGATCATCCCTACCCCAAACGGATGCCTG------------------AGTGCCC-CATGCTTTGGTTCTCGGACAACGCTTTCCATG-CCATGCCCTCCCTCTGTGGGTAGGCTGGGGCCACGGCCGGGGCCTGGCGGTGGTGCTGAAACAGGCAGCCCACCCGTCCCCACTTCTCTC-------------CCAGCTGTCTTTG-GAGTAAGG------GTGCAG--TCGCCAGCCCGAGTCCACCAAAGAGC--GAAGGCGCTGAGGCCAGATGGAGACCACGTACTG----GACC-CCAAATGGGCCCCAGCTTCCTGCATCACGCC--GTATTGCTTCCTGCCGCAAGGCTGCTGATTGTCCCTGGGGGGCAGTCAGATCCGGCCCTGTTGTTCCC-ACGATGGCTGGGGAGCCATAGCCGACTACAGCTGG--------CTTTTCCCAGC-----CTGGGTCTGTAGCTA------GAGACAAGGCCTGGGA-GGGTGGGAGGTTTGCTGAG
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             840561 723 +   1040364 CCCTGAACCTCTT----GGTTCTGGCACC---AGAAGGCATGCCCTAACTTTGTGTCCAGCCTGGACCTTG---------------GAACCCAGCAATTCCCAGAAACACAGGTCTCCTTCGGGGAG---TTTCCT--------------CTGCCAGCTCTGGCTCTCCTCCGCTGGACCCCAGTGGAATCTCCATTCGGGATCTGG----TCCCTTTCTGGCCCCAAATGAAAC-CATCACTGACTTGACCACCTGACCTGGT-GTCACCTCTCC-AGGACTGGAGCTCCAGGAGAACCACCCCCACCCAAGGCTGAACTCCCCTGA-ATTCTTTCTCCTAACTGCACTTG-------GCTCCTGAGCAGCCCTTGCCATG-CCATGCCA-ACCTCCATGGGTTGGCGGGAGCCATGGCTGGTGCCCAGAGTTTGTGTGGAGACGGGCAGCCCATCCACCCTCACTTCTCTCC--AGCCGTGCACCCAGCTGCTCTCAGGAATGAGG------CTGGCAGCTGGTCGGCCTGAACGTG----GGAGCAGAAAGGCTCTGAGGCCCGATGGAGAACATGTGCAGTGCTGGACCCAGAATGTGCCACAACTTCCTCCAATGGTCC--AAATTGCTTCCAGCTGTAGAGTTATGAATGGTCCCCCATGAGTGGTCAGATCCGGCCCCATTGTTTCC-ATCAGGGCCAAGGAGCCAAGGATGAGAAT-GCTGAGCCCCTGCCTCCCCCAGG----------GCCTAAGACTG------GAGACAGGGCCTGGGAGGGGCTGAGGGCCTGCTAGG
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=1907716.000000
s hg38.chr15_KI270850v1_alt    109546 439 +    430880 CAGGCCAAAGAGGGCCTCCCCAGGCAGAAGGCCATGTCTGGGCTTGCCTGGGATTAGTGGTTC-TTATGCAGGGCCTGTTCTGTCCCACACTGGGACTCCTCCTC-TTTTGAGTTGCTGCT---TCCTCCAGGCAGTTTCCCCAAATTAGCC-TC-CCTGACTTCCAACCCGAT--GCCATAATTTCTGGTCTATGCCTTTTGCGGTGATAAGAGCCAAATATAACTTTAACTTTG-CCTGCAGATGTCCAGGGCT-----GGGGGGCAGGCAAACACAGGTTAAAAACTGTGATTCATCCCTGTTGGGTTTCCCTCAAACCCCA--AGAACAAGCACAGGCTGATGGCCTTGAT-GGGGTGATCCAGCACCGACCTCACATGCACTGGTCCCTAGC-CAGCCTGAGCCAGCTGCCATCTGCTCGAGGAAGTAGCTTCAGCCATTGGAGGAGTTGGAG
s panTro5.chr15              17346782 439 -  83230942 CAGGCCAAAGAGGGCCTCCCCAGGCAGAAGGCCATGTCTGGGCTTGCCTGGGATTAGTGGTTC-TTATGCAGGGCCTGTTCTGTCCCACACTGGGACTCCTCCTC-TTTTGAGTTGCTGCT---TCCTCCAGGCAGTTTCCCCAAATTAGCC-TC-CCTGACTTCCAACCCGAT--GCCATAATTTCTGGTCTATGCCTTTTGCGGTGATAAGAGCCAAATATAACTTTAACTTTG-CCTGCAGATGTCCAGGGCT-----GGGGGGCAGACAAACACAGGTTAAAAACTGTGATTCATCCCTGTTGGGTTTCCCTCAAACCCCA--AGAACAAGCACAGGCTGATGGCCTTGAT-GGGGTGATCCAGCACCGATCTCACATGCACTGGTCCCTAAC-CAGCCTGAGCCAGCTGCCATCTGCTCGAGGAAGTAGCTTCAGCCATTGGAGGAGTTGGAG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        32740 439 -    378907 CAGGCCAAAGAGGGCCTCCCCAGGCAGAAGGCCATGTCTGGGCTTGCCTGGGGTTAGTGGTTC-TTATGCAAGGCCCGTTCTGTCCCACACTGGGATTCCTCCTC-TTTTGAGTTGCTGCT---TCCTCCAGGCAGTTTCCCCAAATTAGCC-TC-CCTGACTTCCAACCCACT--GCCATAATTTCTGGTCTATGCCTTTTGTGGTGACAAGAGCCAAATATAACTTTGACTTTG-CCTGCAGATGTCCAGGGCT-----GGGGGGCAGACAAACACAGGTTAAAAACCGTGATTCATCCCTGTTGGGTTTCCCTCAAACCCCA--AGAACAAGCACAGGCTGATGGCCTTGAT-GGGGTGATCCAGCACCGGCCTCACATGCACTGGTCCCTAGC-CAGCCTGAGCCAGCTGCCATCTGCTCGAGGAAGTAGCTTCAGCCATTGGAGGAGTTGGAG
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65369705 442 + 171882078 CAGGCCAGAGAAGGCCTCACCAGACAGAAGGCCATGTCTGGGGTTGCCTGGGGTTAGTGGTTC-CCATGCAAGGCCTGTTCTGTCCCACACTGGGACTCCTCCTC-TTTTGAGTTGCTGCTTCCTCCTCCAGGCAGTTTCCCCAAATCAGCC-TC-CCTGACTTCCAACCTGCT--GCCATAATTTCTGGTCTATGCCTTTTGTGGTGATAAGAGCCAAATACAACTTTGACTTTG-CCTGCAGATGTCCAGGGCT-----AGGGGGCAGAAAAACACAGGTTAAAAACCGTGATTCATCCCTGTTGAGTTTCCCTCAAACCCCA--AGAACAAGCACAGGCTGATGGCCTTGAT-AGGGTGATCCAGTACTGGCCTCACATGTGCTGGTCCCTGGC-CAGCCTGAGCCAGCTGTCATCTGTTCCAGGAAGTAGCTTCAGCCATTGGAGGAGCTGGAG
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50423794 439 -  58131712 CAGGCCAAAGAGGGCCTCACCAGGCAGAAGGCCATGCCTGGGCTTGCCTGGGGTTAGTGGTTC-TTATACAGGGCCCATTCTGTCCCACACCGGGACTCCTCCTC-TTTTGAATTGCTGCT---TCCTCCAGGCAGTTTCCCCAGATTAGCC-TC-CCTGACTTCCAACCCGCT--GCCACAATTTCTGGTCTATGCCTTTTGTGGTGATAAGAGCCAAATATAACTTTGACTTTG-CCTGCAGATGTCCAGGGCT-----CGGGGACAGACAAACACGGGTTAAAAACGGTGATTCATCCCTGTTGGGTTTCCCTCAAACCCCG--AGAGCAAGCACAGGCTGACGGCCTTGAT-GGGGTGGTCCAGCACCCGCCCCACATGGGCTCGTCCCTGGC-CAGCCTGAGCCAGCTGCCATCGGCCTGAGATAGCAGCTTCAGCCATTGGAGGAGTCGGAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       361707 439 -   1458659 CAGGCCAGAGAAGGCCTCACCAGGCAGAAGGCCATGTCTGGGGTTGCCTGGGGTTAGTGGTTC-CCATGCAAGGCCTGTTCTGTCCCACACTGGGACTCCTCCTC-TTTTGAGTTGCTGCT---TCCTCCAGGCAGTTTCCCCAAATCAGCC-TC-CCTGGCTTCCAACCTGCT--GCCATAATTTCTGGTCTATGCCTTTTGTGGTGATAAGAGCCAAATACAACTTTGACTTTG-CCTGCAGATGTCCAGGGCT-----AGGGGGCAGAAAAACACAGGTTAAAAACCGTGATTCATCCCTGTTGAGTTTCCCTCAAACCCCA--AGAACAAGCACAGGCTGATGGCCTTGAT-AGGGTGATCCAGTACTGGCCTCACATGTGCTGGTCCCTGGC-CAGCCTGAGTCAGCTGTCATCTGTTCGAGGAAGTAGCTTCAGCCATTGGAGGAGCTGGAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3803713 439 -   4111199 CAGGCCAGAGAGGGTCTCACTAGGCAGAAGGCCATGTCTGGGGTTGCCTGGGGTTAGTGGTTC-CCATGCAAGGCCCGTTCTGTCCCACACTGGGACTCCTCCTC-TTTTGAGTTGCTGCT---TCCTCCAGGCAGTTTCCCCAAATCAGCC-TC-CCTGACTTCCAACCTGCT--GCCATAATTTCTGGTCTATGCCTTTTGTGGTGATAAGAGCCAAATACAACTTTGACTTTG-CCTGCAGATGTCCAGGGCT-----AGAGGGCAGACAAACACAGGTTAAAAACCATGATTCATCCCTGTTGAGTTTCCCTCAAACCCCA--AGAACAAGCACAGGCTGATGGCCTTGAC-AGGGTGATCCAGTACTGGCCTCACATGTGCTGGTCCCTGGC-CAGCCTAAGCCAGCTGCCATCTGTTCGAGGGAGTAGCTTCAGCCATTGGAGGAGTTGGAG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             400826 438 -   3282555 CAGGCCAAAGAGGGCCTCCCCAGGCAGAAGGCCAGGGCTGGGCTTGCCTGGGGTCAGTGATTC-CTACGTGGGTCCCGTTCTGTCCCACACCGGGACTCCTCCTC---TAGAGTTGCTGCT---TCCTCCAGGCAGTCTCCCCAGATTAGCC-TC-CCTGACTTCCCACCTGCT--GCCACAACTTCCGGTCCATGCCTTTTGTGGTGATAAGAACCAAAGACAACTTTGACTTTG-CCTGCAGATGTCCAGGGCT-----GCAGGGCGGACAAACACAGGTTAAAAATGGTGACTCGTCCCTGACGGGTTTCCCTCAAACCCCC--ACAGCGAGCAGAGGCTGACAGCCTTGATAGGGGTGATCTGGCCCTGGCCCCACATGTGCTGGTCCCTGGC-CAGCCTGAGCCAGCTGCCATCCGCCCCAGGAAGTAGCTTCAGCCATGGGAGAAGTTGGAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       190276 438 -   1024465 CAGGCCAAAGAGAGCCTCCCCAGGCAGAAGGCCAGGGCTGGGCTTGCCTGGGGTCAGTGATTC-CTGTGTGGGTCCCGTTCTGTCCCACACCAGGACTCCTCCTC---TAGAGTTGCTGTT---TCCTCCAGGCAGTCTCCCCAAATTAGCC-TC-CCTGACTTCCAACCTGCT--GCCACAACTTCCGGTCCATGCCTTTTGTGGTGATAAGAACCAAATACAACTTTGACTTTG-CCTACAGATGTCCAGGGCT-----GCAGGGCAGGCAAACACAGGTTAAAAATGGTGATTCATCCCTGTTGGGTTTCCCTCAAACCCCC--AGGGCGAGCAAAGGCTGACGGCCTTGATAGGGGTGATCTAGCCCTGGCCCCACATGTGCTGGTCCCGGGC-CAGCCTGAGCCAGCTGCCATCCGCTCCAGGAAGTAGCTTCAGCCATTGGAGAAGTCGGAG
i cebCap1.NW_016107979v1    C 0 I 7
s aotNan1.NW_018511953v1       991586 430 +   3745603 CAGGCCAAAGAGGGCCTCCCCAGGCAGAAGGCCAGGGCTGGGCTTGCCTGGGGTCAGTGATTC-CCGTGC-GGTCCCGTTCTGTCCCACACCGGGACTCCTCCTC---TAGAGTTGCTGCT---TCCTCCAGGCAGTCTCCCCAGATTAGCC-TC-CCTGACTTCCAACCTGCT--GCCACAACTTCCGGTCCATGCCTTTTGTGGTGATAAGAACCAAATACAACTTTGACTTTG-CCTGCAGATGTCCAGGGCT-----GCAGGACAGACAAACACAGGTTAAAAATGGTGTTTCATCCCTGTTGGGTTTCCCTCAAACTCCC--AGAGCGAG-------TGACGGCCTTGATAGGGGTGATCTGGCCCTGGCCCCACATGTGCTGGTCCGTGGC-CAGCCTGAGCCAGCTGCCATCTGCCCCAGGAAGTAGCTTCAGCCATTGGAGAAGTCAGAG
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67712276 380 - 124595110 ---------GAGGGTCTCCTCAGGCATCAGGACAGATACGGTC-TACCCAGGGTTGGTGAGCA-CTGTGCAGG--CCACTTTGGACCACAGTGGGAACCTCC----------------------TCCTTCAGGCAGTTCCCTAATATTAGCT-TT-CTTCAGTCTCCAGCAGTTTCTCCACCATTTCTGACCCAT---TCTTGTGGTGGTTAGAACC----------TCGAC--TG-CATGCAGATATCCAGTGTT-----GGGG----AAAGATGGCAGG--AGAAAAGGAGACTCATCCCAGTCAGGCCTCTTTGAAATTGCA--GAGGACAGT-CAGGCTGATGGCTCTGACAAAGATGTTCTGGCATCAGTCACACTAGTGCTGGGCCCCGGC-CAGCCCAAGCCAGCTGACAT------GACAGAGCAGCATCAGCCACTGCAGGGGTC----
i mm10.chr9                 C 0 I 4
s canFam3.chr30              38481448 387 +  40214260 AGGGCCA--GAGGGCCTCC--------------------------GTCCGTGGCTGGTGGTGG-CTGTGCAGGGCCCCTTTGGTCCCACCCCAGGACACTACCTCTTTTTAAGAGGCCACA---TCCTCCAGACAGTTTCCCCAAATTAGCC-TCTCTTGACCTCAGACCAGCT--GCCACAACTTCTGGTTTGTTCCTTTTGCAGAGATTAGGGCCAATTATAACTTTGACTCGGTCCCCTAGAGGTCCGGGACTCGTAAAGACGGGAGACTGGAATGGGTTAAAAA-GGTGATTCGTCTCTGTGGGGCTTCCCCTGAGCACT--------GTGTGTAGGCTGATGGCCTTGCTGGGGATGACCTGGCGCCAGCCACATTCGCACTGGTCCCTG-----GCCTGAG-----------------GAGGCGGCACTGGCTGCCACCGGAGGATT-----
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             841284 377 +   1040364 CAGGGCAGAGAGGGTCTCTCAGGGCAGCA----------GGGTTTGCCCAGGGGCAGTGGTTTACTATGCAGGGCCCTTTTTGTCCCACACTGG------TCTCC-TTTTAAGCTGCCACC---TCCTTCAGGCCGTTTCCCCAAATTAGCCTTC-CTTGTCCTCCAATCTGCT--G---------CTGGTCCATTCTTTTTGCAGAAGTTAAGGCCAAATACAACCTTGACTCTGCCCCGTAGATGTCCAGGCCT-----CGGAGGAAGACAGGAAGGAGTTAAAAA-GCTGATCCGTCCCATTCCTGCTCCCCCTAAACCCCATGTGAGTAAGCAACAGC-GATGGCCTTGGT-----------------GGCCACACA---------CTCCGGCGCAGCTAGAGCCAGCTGACACTACCAGGAGGAAGCAG-------CATCTGAG---------
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95280761  10 + 121039945 I

a score=32713.000000
s hg38.chr15_KI270850v1_alt    109985 28 +    430880 GTTTGTATACCCTCAGGGCAGCCAGTCC
s panTro5.chr15              17347221 28 -  83230942 GTTTGTACGCCCTCAGGGCAGCCAGCCC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        33179 28 -    378907 GTTTGTATGCCCTAAGGGCAGCCAGCCC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65370147 28 + 171882078 ATTTCTACGCCCTAAGGGCAGCCGACCC
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50424233 28 -  58131712 ATTTGTACACCCTAAGGGCAGCCAGCCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       362146 28 -   1458659 ATTTCTACGCCCTAAGGGCAGCCAGCCC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3804152 28 -   4111199 ATTTCTACGCCCTAAGGGCAGCCGGCCC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             401264  7 -   3282555 ACTCGTA---------------------
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       992016 12 +   3745603 ACTTGTATGCCC----------------
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67712660 12 - 124595110 CCTTTTCTGTCC----------------
i mm10.chr9                 I 4 C 0
s canFam3.chr30              38481835  4 +  40214260 ---------------------CCAG---
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             841661 28 +   1040364 ACTTGTATGGCCTCAGGGCAGCAAACAC
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       190714  7 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95280761 10 + 121039945 I

a score=1050032.000000
s hg38.chr15_KI270850v1_alt    110013 276 +    430880 CACCTGGAGGGATATCCAGGAAAGATCCCGTAAGAGCCCCTCGGGTTGAGTT-AAATCCCCTCTAGTTATCCCCTCCTCCTGCC----AGCACT-GCTGGCAACACCAGCACCTTGGCTGGGAAGCTAAGGGAATCAAGCAAGCCCCGC-AG-ACCATCTGCACGGGGGTGGCCCAGCAGTCTCAGCAGGCACAGCACAG---------------------------------------------------------------------------------CTTGGTGCCAGCAAGAGACAGACCAGGGAACT-----GCAGGTGGCGGCCAGCTACT-GGGGTGCCTTATCTGCAAAGACATTGATTCCT
s panTro5.chr15              17347249 274 -  83230942 CACCTGGAGGGATATCCAGGAAAGATCCCATAAGAGCCCCTCGGGTTGAGTT-AAATCCCCTCTAGTTAT--CCTCCTCCTGCC----AGCGCT-GCTGGCAACACCAGCACCTTGGCTGGGAAGCTAAGGGAATCAAGTAAGCCCCGC-AG-ACCATATGCGCGGGGGTGGCCCAGCAGGCTCAGCAGGCACAGCACAG---------------------------------------------------------------------------------CTTGGTGCCAGCAAGAGACAGACCAGGGAACT-----GCAGGTGGCGGCCAGCTACT-GGGGTGCCTTATCTGCAAAGACATTGATTCCT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        33207 273 -    378907 CACCTGGAGGGATATCAAGGAAAGATCCCGTAAGAGCCCCTCGGGTTGAGTT-AAATCCCCTCTAGTTATCCCCTCCTCCTGCC----AGCACT-GCTGGCAACACCAGCACCTTGGCTGGGAAGCTAAGGGAATCAAGCAAGCCCCGC-AG-ACCATCTGTGCGGGGGTGGCCCAGCAGTCTCAGCAGGCACAGCACAG---------------------------------------------------------------------------------CTTGGTGCCAGCAAGAGACAGACCAGGGAACT-----GCAGGTGGCGGC---CTACT-GGGGTGCCTTATCTGCAAAGACATTGATTCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65370175 277 + 171882078 CACCTAGAGAGATGTCCAGGAAAGATCCCGTAAGAGCCCCTCGGGCTGAGTT-AAATCCCCTGTAGTTATCCCCTCCTCCTGCCGGTGGGCACT-GCTGGCAACAC---CACCATGTCTGGGAAGCTAAGGGAATCAAGTAAGCCCCGC-AG-ACCATCTGCGTGGGGGCGgcgcagcaggctcagcaagcacagcacag---------------------------------------------------------------------------------cTTGGTGCCAGCAAGAGACAGACCAGGGAACT-----GCAGGTGGCGGCCACCTACT-GGGGTGCCTTATCTGCAAAGACATTGATTCCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50424261 272 -  58131712 CACCAGGAAGGATGTCCAAGAAAGAT-CCGTAAAAACCCCTTGGGCTGAGTT-AAATCCCCTCTAGTTAT---CTCCTCCTGCC----AGCACT-GCTGGCAACACCAGCACCTTGTCTGGGAAGCTAAGGGAATCAAGAGAGCCCTGC-AG-ACCATCTGCATGGAGGTGGCCCAGCAGGCTCAGCAGGCCCAGCACAG---------------------------------------------------------------------------------CTCGGTACCAGCAAGGGACAGACCACGGAACT-----GCAGGTGGCGGCCACCTACC-GGGGTGCCTTATCTGCAAAGACATTGATTCCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       362174 277 -   1458659 CATCTAGAGAGATGTCCAGGAAAGATCCCATAAGAGCCCCTCGGGCTGAGTT-AAATCCCCTGTAGTTATCCCCTCCTCCTGCCGGTGGGCACT-GCTGGCAACAC---CACCGTGTCTGGGAAGCTAAGGGAATCAAGTAAGCCCCGC-AG-ACCATCTGCGTGGGGGCGGCGCGGCAGGCTCAGCAGGCACAGCACAG---------------------------------------------------------------------------------CTTGGTGCCAGCAAGAGACAGACCAGGGAACT-----GCAGGTGGCGGCCACCTACT-GGGGTGCCTTATCTGCAAAGACATTGATTCCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3804180 275 -   4111199 CACCTGGACAGATGTCCAGGAAAGATCACCTAAGAGCCCCCT-GGCTGAGTT-AAATCCCCTGTAGTTATCCCCTCCTCCTGCC----AGCACT-GCTGGCAACACCAGCACCTTGTCTGGGAAGCTAAGGGAATCAAGTAAGCCCCGC-AG-ACCATCTGCACAGGGGCGGCCCAGCAGGCTCAGCAGGCACAGCACAG---------------------------------------------------------------------------------CTTGGTGCCAGCAAGAGACAGACCAGGGAACT-----GCAGGTGGTGGCCACCTACT-GGGGTGCCTTATCTGCAAAGACATTGTTTCCT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             401271 263 -   3282555 CGCCCGGAGGGATGTCCAGGA----------AAGAGTCCCCTGGGCTGAGTT-AAATCCCCTCTAGTTAT---CTCCTTCTGCT----GGCACT-GCTGGTGACATCAGCACCCTGTCTAGGGAGCTAAGGGACTCAAGCCAGCACTGC-AG-CCCGTCTGCCCGGGGGCAGCCCAGCAGGCTCAACAGGCCTCGCACAG---------------------------------------------------------------------------------CTCGGTGCCAGCAAGGCACAGACCAGGGAACT-----GCAGCTGGTGGCCACCTACA-GGGGTGCCTTATCTGCAAAGACATTGATTCCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       190721 272 -   1024465 CACCCAGAGGGATGTCTAGGAAAGATCCCGTAAGAGTCCCTTGGGCTAAGTT-AAGTCCCCTCTAGTTAT---CTCCTCCTGCT----GGCACT-GCTGGTGACACCAGCACCCTGTCTAGAGAGCTAAGGGAGTCAAGCAAGCGCTGC-AG-CCCATCTGCCC-GGGGCAGACCAGCAGGCTCAGCAGGCCCTGCACAG---------------------------------------------------------------------------------CTCGGGGCCAGCAAGGGACAGACCAGGGAACT-----GCAGCTGGTGGCCACCTACA-GGTGTGTCTTATCTGCAAAGACATTGATTCCT
i cebCap1.NW_016107979v1    I 7 C 0
s aotNan1.NW_018511953v1       992028 268 +   3745603 -----GGAGGGATGTCCAGGAAAGATCCCGTAAGAGCCCCCTGGGCTGAGTG-AAGTCCCCTCTAGTTAG---GTCCTCCTGCC----AGCATT-GCTGGTGACACCAGCACCCTGTCTAGGGAGCTAAGGGAATCCAGTGAGCACTGC-AG-CCCATCTGCCCGGGGACGGCCCAGCAGGCTCAGCAGGCCCTGCACAG---------------------------------------------------------------------------------CTCGGTGCCAGCAAGGGGCAGACCAGGTAACT-----GCAGGTGGCGGCCACCTACA-GGGGTGTCTTATCTGCAAAGACATTGATTCCT
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67712672 202 - 124595110 ---CAGGAGAGATGGCCAAGAAAGATAATGC---TGTTCTCAGGGCTGAGCTGAAATCCTCCCTAGTGAC-------TCCTG-----------------------------------------AGTTAAAAGGATGTCATGAGCAC--A-AA-GCCACTTGCCCAGGG-------------CTCTGTGGGCCCAGCACAT---------------------------------------------------------------------------------CTT-GTGTCGTGGAACCTCAGACCGGGACACTGCTCAGCAAGCAGTAGGAGCTTGTAGGGGGTGCCGTGTCTGC----------------
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38481839 335 +  40214260 --------GGGATGGCCAAGAAAGATCATGCTC-TTCCTTTTGGGCTGAGCT-GAAATCCCTCCAGTTAG----CCCTCTGGCC----AGCAGTGGCTGGCGACGCCAGAACCTGGTCTGACAGGGTAAAGGAATCGAATGAGAGCTACAAA-ACCGTCTGGGTGGGTATGGGccagcaggcccggcaggcccagcagaaccaccaggcccagcagacccagcaggcccagcagacccagcagaaccaccaggcccagcagaaccaccaggcccagcagACCTCGGTGCCAGTGAGGGGCAGACCAGAGAA-T-----GGATATGGGG-----------TGGGCACCTCATCTGCAAAAGCATTGATTCCT
i canFam3.chr30             C 0 I 225
s dasNov3.JH572216             841689 259 +   1040364 CACTGGGAAGGATGTCCAAGAAAGATAATGCT--TTCCCCCTGGACGGAGCTGAAATCCCCTCTGGTTAT---CGTCTCTTGCC----AGCACTGGCTGGCCATACCAGAACCTTGCCTGGGAAACTAAAGGAATCAAATGAGACCTGC-AGAACCATCTGGGTGGGTACGGCCCAG----------GGGCCCGGCACCC---------------------------------------------------------------------------------TCGGGTGC----GAGGGACAGGCGGGGGAGTGG----GCAAGCGGCAGGCGCGTAG--GGGGCGCCTGAT-GGCAGGGGCGTGGGTTCTT
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95280761  10 + 121039945 I

a score=63787.000000
s hg38.chr15_KI270850v1_alt    110289 15 +    430880 AAGAGCAAAACACAG
s panTro5.chr15              17347523 15 -  83230942 AAGAGCAAAACACAG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        33480 15 -    378907 AAGAGCAAAACACAG
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65370452 15 + 171882078 CAGAGCGAAACACAG
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50424533 15 -  58131712 TAGAGCAAAACACAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       362451 15 -   1458659 CAGAGCGAAACACAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3804455 15 -   4111199 AAGAGCGAAACACAG
i colAng1.NW_012116021v1    C 0 I 19
s saiBol1.JH378276             401534 15 -   3282555 AAGAGCAAAACATAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       190993 15 -   1024465 AAGAGTAAAACACAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       992296 15 +   3745603 AAGAGCAAAACACAG
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67712874 15 - 124595110 TTGAGCAAAATGCAG
i mm10.chr9                 C 0 I 3
s dasNov3.JH572216             841948 15 +   1040364 AAGGGCTCAGCCCTG
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr30              38482174 225 +  40214260 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95280761 10 + 121039945 I

a score=-4624.000000
s hg38.chr15_KI270850v1_alt    110304 7 +    430880 CACACTA--
s panTro5.chr15              17347538 7 -  83230942 CACACTA--
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        33495 7 -    378907 CACACTA--
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65370467 7 + 171882078 CACACTA--
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50424548 7 -  58131712 CACACTA--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       362466 7 -   1458659 GACACTA--
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276             401549 2 -   3282555 --CG-----
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       191008 2 -   1024465 --CA-----
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       992311 2 +   3745603 --CA-----
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67712892 4 - 124595110 GCCA-----
i mm10.chr9                 I 3 C 0
s dasNov3.JH572216             841963 7 +   1040364 --CACGGTC
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr30              38482174 225 +  40214260 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3804470 19 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95280761 10 + 121039945 I

a score=6006.000000
s hg38.chr15_KI270850v1_alt    110311 1 +    430880 A
s panTro5.chr15              17347545 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        33502 1 -    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65370474 1 + 171882078 A
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50424555 1 -  58131712 A
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       362473 1 -   1458659 A
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3804489 1 -   4111199 A
i colAng1.NW_012116021v1    I 19 C 0
s saiBol1.JH378276             401551 1 -   3282555 A
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       191010 1 -   1024465 A
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       992313 1 +   3745603 A
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67712896 1 - 124595110 A
i mm10.chr9                 C 0 C 0
s dasNov3.JH572216             841970 1 +   1040364 A
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr30              38482174 225 +  40214260 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95280761 10 + 121039945 I

a score=1013945.000000
s hg38.chr15_KI270850v1_alt    110312 230 +    430880 AGTGAGGGAGGCCATAGCACAAGGGGTGGGGGCACATGG-CCCTGCAGGATGGAGCCACCACAGTCACCGgctggaac-ggctcacagcagct---------gccaggagccaactgttgaattttcaggaattttgagaggcaggtgatactgcccacagtgggaatatttatacca--ggaaaagaggcaaatactgaaaatcagggttccctctccccaacaaagccctttgcgaaacat
s panTro5.chr15              17347546 230 -  83230942 AGTGAGGGAGGCCATAGCACAAGGGGTGGGAGCACATGG-CCCTGCAGGATGGAGCCACCACAGTCACCGgctggaac-ggctcacagcagct---------gccaggagccaactgttgaattttcaggaattttgagaggcaggtgataCTGCCGACACtgggaatatttatacca--ggaaaagaggcaaatactgaaaatcagggttccctctccccaagaaagcccattgtgaaacat
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        33503 230 -    378907 AGTGAGGGAGGCCATAGCACAAGGGGTGGGGACACATGG-CCCTGCAGGATGGAGCCACCACAGTCACCAgctggaat-ggctcacagcagca---------gccaggagccaactgctgaattttcaggaattttgagagccaggtgatactgcccacagtgggaatatttatacca--ggaaaagaggcaaatactgaaaatcagggttccctctccccaagaaagcccattgctaaacat
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65370475 230 + 171882078 AGGGAGGGAGGCCATAGCACAAGGGGTGGGGGCACATGG-CCCTGCAGGATGGAGCCACCACCGTCACCGgctggaat-agctcacagcagct---------gccaggagccaactgttgcattttcaggaattttgagagccaggtgagactgcccacagtgggaatatttacacca--ggcaaagaggcaaatactgaaaatcagggttccctctccccaagaaagcccactgctaaacat
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50424556 230 -  58131712 AGTGAGGGAGGCCATAGCACAAGGGGTGGGGGCACACGG-CCCTGCAGGATGGAGCTACCACTGCCACCGgctggagc-ggctcacagcagct---------gccaggagccaactgttgaatgttcaggaattttgagagccgggtgatactgcccatagtgagaatatttatacca--ggaaaagaggcaaacactgtaaataagggttccccctccccaagaaagcccattgctaaacat
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       362474 230 -   1458659 AGGGAGGGAGGCCATAGCACAAGGGGTGGGGGCACATGG-CCCTGCAGGATGGAGCCACCACCGTCACCAgctggaat-agctcacagcagct---------gccaggagccgactgttgcattttcaggaattttgagagccaggtgacactgcccacagtgggaatatttatacca--ggcaaagaggcaaatactgaaaatcagggttccctctccccaagaaagcccactgctaaacat
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3804490 230 -   4111199 AGGGGTGGGGGCACGTGCACAAGGGGTGGGGGCACGTGG-CCCTGCAGGATGGAGCCACCACCGTCACTGgctggaat-agctcacagcagct---------gccagaagccaactgttgcattttcaggaattttgagagccaggtgatactgcccacagcgggaatatttatacca--ggcaaagaggcaaatactgaaaatcagggttccctctccccaagaaagcccactgctaaacat
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             401552 230 -   3282555 AGTGAGGGAGGCCGTCGCACAAGGGGTGGGGGCACATGGCCCCTGCAGGATGGAGCCACCCC-GGCACCGgctggagc-ggctcacagcagct---------gccaggagcccactcttgaattttcaggaattttgagagtcaggtggtaCTGCccacagtgagaatatttatgcca--ggaaaagaggcaaatagtacaaatcagggatccgcctcccccaaatagcccattgctaaacat
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       191011 230 -   1024465 AGTGAGGGAGGATGTCACACAAGGGGTGGGGGCACATGGCCCCTGCAAGATGGAGCCACCCC-GGCACCGgctagagc-agctcgcagcagct---------gccaggagcccactgttgaattttcaggaattttgagagtcaggtggtaCTGCGcacagtgagaatatttatgcca--ggaaaagaggcaaatactgcaaatcagggatccccctcccccaaatagcccattgctaaacat
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       992314 231 +   3745603 AGTGAGGGAGGCTGTCGCACAAGGGGTGGGAGCACATGGCCCCTGCAGGATGGAGCCACCCCTGGCACCGgctggagc-ggctcacagcagct---------gccaggagcccactgttgaattttcaggaattttgagagtcaggtggtaCTGCccacaatgagaatatttatgtca--ggaaaagaggcaaatattgcaaatcagggatccccctcccccaaatagcccattgctaaacat
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67712897 186 - 124595110 ACCACGGGCAGCCACGGAACAGAGGGTGGG-GCACACGACCCCCACAGGATGGAGCCACCACCCTGGTGGGCTGGAGT-GGCTTGGAGCAGCT---------GGCAAGAGCCGAA-----------CAGGGATTTTGTGGGCCAGGTGATACTGCCCACTCTGAGAATATTTATATCC--CGCAAAGAGGTAAACATTTCAACCCGGGGC---------------------------------
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38482399 224 +  40214260 ACTGAGGGCAGCCCCAGGACAGAAGGGGAGGACGCGTGGCCTCCTCAGGATGGAGC-ATCACCAGGGCAGGCCGGA----gctcacagcggct---------ggcaagagctgagtgttaactttgcaggagtttggcCCTCCGGGCGATGTGGCCGg--gtggcagtatttataccc--tg-gaagaggcaagtgctacaaatcggggttccctttctcccagaaagcctgttgctcaacct
i canFam3.chr30             I 225 C 0
s dasNov3.JH572216             841971 218 +   1040364 -CCGAGGGCTGCCTCA---------------------GG-CCCTGCAGGGCGG-GCCACCGCCCAGGGAGGCTGCAGCTGGCTCACGGGCgctcattactggggcaagagccgatggctgaatgttcaggaattttgtgagccaggtgCCTTTGCC-GTAGCGGGAATATTTACACCACCCAAAGAGAGGAAAACACAACAGACCAGGGCCCCACGCCCCCATGAAAGACTGATGTTAAGCAT
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95280761  10 + 121039945 I

a score=226565.000000
s hg38.chr15_KI270850v1_alt    110542 38 +    430880 ttacctacccagcacCCACGGGGAAGGGGGCACATCTC
s panTro5.chr15              17347776 38 -  83230942 ttacctacccagcacCCACGGGGAAGGGGGCACATCTC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        33733 38 -    378907 ttacctacccagcacCCACAGGGAAGGGGGCACATCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95280771 38 + 121039945 TTACCTACCCAGCACCCACGGGGAAGGGGGCACATCTG
i nomLeu3.chr6              I 10 C 0
s macFas5.chr7               65370705 38 + 171882078 ttacctacccagcacCCATGGGGAAGGGGACACATCTC
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50424786 38 -  58131712 ttacctacccagcacCCACGGGGAAGAGGGCACGTCTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       362704 38 -   1458659 ttacctacccagcacCCATGGGGAAGGGGACACATCTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3804720 38 -   4111199 ttacctacccagcacCCACAGGGAAGGGGACACATCTC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             401782 38 -   3282555 ttacctgcccaGTGCCCACAGGGAAGGGGGCACACGTC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       191241 38 -   1024465 ttacctgcccagcactCACAGGGAAGGGGACACATGTC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       992545 38 +   3745603 ttacctgcccaGCGCCCACAGGGAAGGGGGCACATGTC
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67713083 38 - 124595110 TGGGCTGCTCACCACCCACAAGGAAGAGGGCACAGTCC
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38482623 35 +  40214260 ttaccTG-TTAGGGTGCACGGGGA--GGGGCTCCTCTC
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             842189 38 +   1040364 TTACTTACCTTCCACCCATGGGGAAGGGGGCACGCCCC
i dasNov3.JH572216          C 0 I 9
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=7800.000000
s hg38.chr15_KI270850v1_alt    110580 1 +    430880 C
s panTro5.chr15              17347814 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        33771 1 -    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95280809 1 + 121039945 C
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65370743 1 + 171882078 C
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50424824 1 -  58131712 C
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       362742 1 -   1458659 C
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3804758 1 -   4111199 C
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             401820 1 -   3282555 C
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       191279 1 -   1024465 C
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       992583 1 +   3745603 C
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67713121 1 - 124595110 C
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38482658 1 +  40214260 C
i canFam3.chr30             C 0 I 63
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH572216             842227 9 +   1040364 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=8832.000000
s hg38.chr15_KI270850v1_alt    110581 2 +    430880 CT
s panTro5.chr15              17347815 2 -  83230942 CT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        33772 2 -    378907 CT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95280810 2 + 121039945 CT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65370744 2 + 171882078 CT
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50424825 2 -  58131712 CT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       362743 2 -   1458659 CT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3804759 2 -   4111199 GT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             401821 2 -   3282555 CT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       191280 2 -   1024465 CT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       992584 2 +   3745603 CT
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67713122 2 - 124595110 TT
i mm10.chr9                 C 0 I 19
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH572216             842227 9 +   1040364 I
e canFam3.chr30              38482659 63 +  40214260 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=29433.000000
s hg38.chr15_KI270850v1_alt    110583 8 +    430880 GTGCCTAC
s panTro5.chr15              17347817 8 -  83230942 GTGCCTAC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        33774 8 -    378907 GTGCCTAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95280812 8 + 121039945 GCGCCTAC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65370746 8 + 171882078 GTGCCTAC
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50424827 8 -  58131712 GAGCCTAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       362745 8 -   1458659 GTGCCTAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3804761 8 -   4111199 GTGCCCAC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             401823 8 -   3282555 GCCCCTAC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       191282 8 -   1024465 GCCTCTAC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       992586 8 +   3745603 GCTCCTAC
i aotNan1.NW_018511953v1    C 0 C 0
e mm10.chr9                  67713124 19 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH572216             842227 9 +   1040364 I
e canFam3.chr30              38482659 63 +  40214260 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=70115.000000
s hg38.chr15_KI270850v1_alt    110591 38 +    430880 CCACCtgtgttaatcagggttccctagagggacaga--ac
s panTro5.chr15              17347825 38 -  83230942 CCACCtgtgttaatcagggttccctagagggacaga--ac
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        33782 34 -    378907 CCACCTGTgtt----agggttccctagaggaacaga--ac
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95280820 34 + 121039945 CCACCTGCgtt----agggttccctagagggacaga--ac
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65370754 36 + 171882078 CCACCtgtgctagtcagggttccctagagggataga----
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50424835 38 -  58131712 CCACCtgtgttaatcagggttccctagagggacagaag--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       362753 36 -   1458659 CCACCtgtgctagtcagggttccctagagggataga----
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3804769 36 -   4111199 CCACCtgtgttagtcagggttccctagagggacaga----
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1       992594  0 +   3745603 C
e mm10.chr9                  67713124 19 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH572216             842227  9 +   1040364 I
e canFam3.chr30              38482659 63 +  40214260 I
e cebCap1.NW_016107979v1       191290  0 -   1024465 C
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             401831  0 -   3282555 C

a score=42745.000000
s hg38.chr15_KI270850v1_alt    110629 101 +    430880 taataggagatatagacagatatagatatagatatagatat------------agatatagatatagatatag------atatagatatagatatagataatagatatagatatagata
s panTro5.chr15              17347863  65 -  83230942 taataggagatatagacagatatagatatagatatagatat------------agatatatatatagatatag------atat------------------------------------
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        33816  41 -    378907 taataggagatatagacagatatagatataaatatagatat------------------------------------------------------------------------------
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65370790  70 + 171882078 ----ataagagatatatagatataggtatagatatagat--------------agatagatagatagatagat------agatagatagataga-------------------------
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50424873  94 -  58131712 ttataggagatagatatagatatagatatagatgtagatatagatatagatacagatacagatatagatatagatatagatatagatatagata-------------------------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       362789  55 -   1458659 ----ataagatatatatagatataggtatagatatagat--------------agatacatagatagatagag----------------------------------------------
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3804805  60 -   4111199 ----ataagagatatatagaaataggtatagatatagat--------------agataaatagatagatagat------agata-----------------------------------
i colAng1.NW_012116021v1    C 0 I 21
e aotNan1.NW_018511953v1       992594   0 +   3745603 C
e mm10.chr9                  67713124  19 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH572216             842227   9 +   1040364 I
e canFam3.chr30              38482659  63 +  40214260 I
e cebCap1.NW_016107979v1       191290   0 -   1024465 C
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95280854   0 + 121039945 C
e saiBol1.JH378276             401831   0 -   3282555 C

a score=-442.000000
s hg38.chr15_KI270850v1_alt    110730 4 +    430880 taga
s macFas5.chr7               65370860 3 + 171882078 tag-
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50424967 3 -  58131712 tat-
i chlSab2.chr26             C 0 C 0
e aotNan1.NW_018511953v1       992594 0 +   3745603 C
e mm10.chr9                  67713124 19 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH572216             842227 9 +   1040364 I
e canFam3.chr30              38482659 63 +  40214260 I
e cebCap1.NW_016107979v1       191290 0 -   1024465 C
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3804865 21 -   4111199 I
e manLeu1.NW_012105520v1       362844 0 -   1458659 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               95280854 0 + 121039945 C
e saiBol1.JH378276             401831 0 -   3282555 C
e gorGor5.CYUI01015946v1        33857 0 -    378907 C
e panTro5.chr15              17347928 0 -  83230942 C

a score=4095.000000
s hg38.chr15_KI270850v1_alt    110734 24 +    430880 taatagatatagatatagatagat
s panTro5.chr15              17347928 22 -  83230942 --atagatatagatatagatagat
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        33857 12 -    378907 --atagat----------atagat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95280854 21 + 121039945 taatagg---agatagatatagat
i nomLeu3.chr6              C 0 C 0
e aotNan1.NW_018511953v1       992594  0 +   3745603 C
e mm10.chr9                  67713124 19 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH572216             842227  9 +   1040364 I
e canFam3.chr30              38482659 63 +  40214260 I
e cebCap1.NW_016107979v1       191290  0 -   1024465 C
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3804865 21 -   4111199 I
e manLeu1.NW_012105520v1       362844  0 -   1458659 C
e chlSab2.chr26              50424970  0 -  58131712 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65370863  0 + 171882078 C
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             401831  0 -   3282555 C

a score=823080.000000
s hg38.chr15_KI270850v1_alt    110758 379 +    430880 atataaaggggagtttatgaagtattaacttacacaatcacaaggtcccacaataggctgtctgcaagtttgaggagcaaggagagccaatccgagtctcaaaactgaagaacctggagtccgatgttagagggcaggaagtgtccagcatgggagaaagatgtaggctgggaagctaggccaatcttaccttttcatgtttttctgcctgctttatattcgctagcagctgattagaaagatggtacccaccagtattaaaggtgggtctgccttccccagcccactgactcaaatgtttatctccttttacaatgccctcacagacacttccagtaggtcaatactttgcagccttcaacccaatcaagttgacact
s panTro5.chr15              17347950 379 -  83230942 atataaaggggagtttatgaagtattaacttacacaatcacaaggtcccacaataggctgtctgcaagtttgaggagcaaggagagccaatccgagtctcagaactgaagaacttggagtccgatgttagagggcaggaagtgtccagcatggaagaaagatgtaggctgggaggctaggcccgtcttaccttttcatgtttttctgcctgctttatatttgctagcagctgattagaaagatggtacccaccagtattaaaggtgggtctgccttccccagcccactgactcaaatgtttatctccttttacaatgccctcacagacacttccagtaggtcaatactttgcagccttcaacccaatcaagttgacact
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        33869 379 -    378907 gtataaaggggagtttatcaagtattaacttacacaatcacaaggtcccacaataggctgtctgcaagtttgaggagcaaggagagacaatccgagtctcaaaactgaagaacttggagtccgatgctagagggcagcaagcgtccagcatgggagaaagatgtaggctgggaggctaggccagtcttgccttttcacgtttttctgcctgctttatattcgctagcaactgattagaaagatggtgcccaccagtattaagggtgagtctgccttccccagcccactggctcaaatattaatctccttttacaaagccctcacagacacacccaggagatcaatactttgcagccttcaaccgaatcaagttgacact
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95280875 375 + 121039945 atataaaggggaagttattaagtattaacttacgcaatcacaacgtcccacagtaggctgtccgcaagcctgaggagcaaggagagccagtctgagttccaaaaccgaagaacttcgagtctgatgttagagggcaggaggcgtccagcatgggagaaagatgtagggtgggaggctgggccagtctcgccttttcacatttttctgctggctttatattcgctggcagctgatt----agatggtgcccaccagtattaagggtgggtctgccttccccagcccaatgactcaaatgttaatctcctttgacaacaccctcacagacacacccagggcatcaatactttgcacccttcaacccaatcgagttgacact
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65370863 371 + 171882078 ----aaaggggagtttattaaatattaacttacacaattacacagtcccacaataggctgtctgcaagtttgaggagcaagaagagccagtcggagtctcaaaactcaagaacttggagtccgatgttagagggcaggaagcatccagcaggggagaaagatgtaggctgggaggctggtccagtcttgccttttcacatttttctgcctgctttatattcactggcagctcatt----agatggtgcccaccagtattaagggtgggtttgccttccccagcccactgactcaaatgttagtctccttttacaacaccctcacagacacacccaagggatcaatactttgcagccttcaacccaatcaagttgacact
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50424970 369 -  58131712 ----aaaggggaatttattaagtactaacttgaacaatcacaaggtccctcaataggctgtctgcaagcttgaggagcaaggagacccagtctgagtcccaaaactgaagaacttcgagtccaatgttagaggggaggacatgtccagcatgggagaaagatgtaggctgggaggctgggccagtctcgcattttcacatttttctgcctgctttatatttgctgacagatgatc----agatggtgcccaccagtatgaagggtgggtctgccttccccagcccactgagtcaaatgttaatctcctttggcaacaccctcgcagacacaccca--ggatcaatactttgcacccttcaacccaatcaagttgacagt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       362844 369 -   1458659 ------aggggagtttattaaatattaacttacacaatcacacggtcccacaataggctgtctgcaagtttgaggagcaagaagagccagtccgagtctcaaaactcaagaacttggagtccgatgttagagggcaggaagcatccagcaggggagaaagatgtaggctgggaggctgctccagtcttgccttttcacatttttctgcctgctttatattcactggcagctcatt----agatggtgcccaccagtattaagggtgggtttgcctttcccagcccactgactcaaatgttagtctccttttacaacaccctcacagacacacccaagggatcaatactttgcagccttcagcccaatcaagttgacact
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3804886 374 -   4111199 atagaaagggaagtttattaaatattaacttacacaatcacatggtcccacaataggctgtctgcaagtttgagcagcaagaagacccagcccgagtctcaaaactcaagaacttggagtccgat-ttagagggcaggaagcatccagcaggggagaaagatgtaggctgggaggctggtccactcttgccttttcacatttttctgcccgctttatattcactggcagctcatt----agatggtgcccaccagtattaagggtgggtttgccttccccagcccactgactcaaatgttaatctccttttacaacaccctcacagacacacccaagggatcaatactttgcagccttcaacccaatcaagttgacact
i colAng1.NW_012116021v1    I 21 C 0
e aotNan1.NW_018511953v1       992594   0 +   3745603 C
e mm10.chr9                  67713124  19 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH572216             842227   9 +   1040364 I
e canFam3.chr30              38482659  63 +  40214260 I
e cebCap1.NW_016107979v1       191290   0 -   1024465 C
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             401831   0 -   3282555 C

a score=32502.000000
s hg38.chr15_KI270850v1_alt    111137 13 +    430880 cagtattaactgt
s panTro5.chr15              17348329 13 -  83230942 cagtattaactgt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        34248 13 -    378907 cagtattaaccgt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95281250 13 + 121039945 cagtattaaccat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65371234 13 + 171882078 cagtattaaccat
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50425339 13 -  58131712 cagtattaactat
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       363213 13 -   1458659 cagtattaaccat
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3805260 13 -   4111199 cagtattaaccat
i colAng1.NW_012116021v1    C 0 C 0
s dasNov3.JH572216             842236 13 +   1040364 CAGGAGTGACTCC
i dasNov3.JH572216          I 9 C 0
e aotNan1.NW_018511953v1       992594  0 +   3745603 C
e mm10.chr9                  67713124 19 - 124595110 I
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr30              38482659 63 +  40214260 I
e cebCap1.NW_016107979v1       191290  0 -   1024465 C
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             401831  0 -   3282555 C

a score=9410.000000
s hg38.chr15_KI270850v1_alt    111150 4 +    430880 -caca
s panTro5.chr15              17348342 4 -  83230942 -caca
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        34261 4 -    378907 -caca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95281263 4 + 121039945 -caca
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65371247 4 + 171882078 -caca
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50425352 4 -  58131712 -caca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       363226 4 -   1458659 -caca
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3805273 4 -   4111199 -cacG
i colAng1.NW_012116021v1    C 0 C 0
s mm10.chr9                  67713143 4 - 124595110 -CACA
i mm10.chr9                 I 19 C 0
s dasNov3.JH572216             842249 4 +   1040364 CCCC-
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1       992594 0 +   3745603 C
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr30              38482659 63 +  40214260 I
e cebCap1.NW_016107979v1       191290 0 -   1024465 C
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             401831 0 -   3282555 C

a score=163252.000000
s hg38.chr15_KI270850v1_alt    111154 35 +    430880 CCACCCTTGCACTAAAGGTATACATACACCCACTA
s panTro5.chr15              17348346 35 -  83230942 CCACCCTTGCACTAAAGGTATACATACACCCACTA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        34265 35 -    378907 CCACCCTTGTACTAAAGGTATACATACACCCACTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95281267 35 + 121039945 CCACCCTTGCACTAAAGGTATATGTAGACCCGCCA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65371251 35 + 171882078 CCACCCTTGCACTAAAGGTATATGTACACCCACTA
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50425356 35 -  58131712 CCACCCTTGTGCTAAAGGCATATGTAGACCAGCCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       363230 35 -   1458659 CCACCCTTGCACTAAAGGTGTATGTACACCCACTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3805277 35 -   4111199 CCACCCTTGCACTACAGGTATACGTACACCCACTA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             401831 35 -   3282555 CCACCCTTGAACTAAAGGTATATGTAGACCCTCCA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       191290 35 -   1024465 CCACCCTTGAACTAAAGGTATATGTAGACCCTCCA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       992594 35 +   3745603 CCACCCTTGAACTAAAGGTATATATAGACCCTCCA
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67713147 24 - 124595110 -CCCCCTTGCCCAGAAGGTAT----------GCTA
i mm10.chr9                 C 0 C 0
s dasNov3.JH572216             842253 35 +   1040364 ATCCCCTTGCACCAGGGGTGCATATAAACCTGTTG
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr30              38482659 63 +  40214260 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=3571974.000000
s hg38.chr15_KI270850v1_alt    111189 647 +    430880 GGGCATGGTCA----AGGTCAGAGATCTGGGCCAGACAGGAACTGAAGTAGATGGTTGGCCCTAACCACTGAACCACCTGCCTGCGGCCTCCTCCCATCAGA-AGAGAGTAG-AGCCTGTTTGGC--------------CAGAGTGGAATGGTGGCAGGAAGCAGAGGTACTTTCCGGAGCGCTGGGGTCTGAATGGGTCCATTGA--GGCTGGGCCCTGCTGCTTCCTGTAGGGCTGAGT-GGGAGAGGCTCACAGAGGCTGCCTTGTGCAGCTGG-AGCGCATA-GCCAGGGAGGCCCC-CACTCCAACAGAGGCCTCTGAGGCCTTGCTGGCCGGGGCTTTGGAAACTCTGACAGCGCTGCTTC---CCTCACCTCCTGATCTCC-TTTTTCTGCCCCTCTTACACTCTCTGAGGGGCTGCAGTTGCAAGAACCCAGAATCTCTGTCTTGGAGGTAGT-------GGGGGGG-GGGGGCAGTTGAAGAGGGGCTTTGAATGGAGAGGGTCTGCACAATAAAGATGTAATAAGCTAGGAGTCAAT-C-CAGAGGACTTCCTGGAGGAGGTGATGGTGGTGT--AGAGTCACAGA--GAGGGAGGAACAGGC---AGTCTCAGAGGACAGCAGCAAGGCCAAGTGAGAG-ACTG--GCAGAGGTATACAGGTCCCCG-TTGGCTGGGGT--GAGGAGGG--
s panTro5.chr15              17348381 645 -  83230942 GGGCATGGTCA----ACGTCAGAGATCTGGGCCAGACAGGAACTGAAGTAGATGGTTGGCCCTAACCACTGAACCACCTGCCTGCGGCCTCCTCCCATCAGA-AGAGAGTAG-AGCCTGTTTGGC--------------CAGAGTGGAATGGTGGCAGGAAGCAGAGGTACTTTCCGGAGCGCTGGGGTCTGAATGGGTCCATTGA--GGCCGGGCCCTGCTGCTTCCTGTAGGGCTGAGT-GGGAGAGGCTCACAGAGGCTGCCTTGTGCTGCTGG-AGCGCATA-GCCAGGGAGGCCCC-CACCCCAACAGAGGCCTCTGATGCCCTGCTGGCCAGGGCTTTGGAAACTCTGACAGCACTGCTTC---CCCTACCTCCTGATCTCC-TTTTTCTGCCCCTCTTACACTCTCTGAGGGGCTGCAGTTGCAAGAACCCAGAATCTCTGTCTTGGAGGTAGT---------AGGGG-GTGGGCAGTTGAAGAGGGGCTTTGAATGGAGAGGGTCTGCACAATAAAGATGTAATAAGCTAGGAGTCAAT-C-CAGAGGACTTCCTGGAGGAGGTGATGGTGGTGT--AGAGTCACAGA--GAGGGAGGAATAGGC---AGTCTCAGAGGACAGCAGCAAGGCCAAGTGAGAG-ACTG--GCAGAGGTATACAGGTCCCCG-TTGGCTGGGGT--GAGGAGGG--
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        34300 654 -    378907 AGGCATGGTCA----ACATCAGGGATCTGGGCCAGACAGGAACTGAAGTAGATGGTTGGCCCTAACCACTGAACCACCTGCCTGCGGCCCCCTCCCAGCAGA-ACAGAGTAG-AGGCTGTTTGGC--------------CAGAGTGGAATGGTGGCAGGAAGCAGAGGTACTTTCCGGAGCGCAGGGGTCTGAATCAGTCCATTGA--GGCTGGGCCCTCCTGCTTCCTGTAGGGCTGAGC-GGGAGAAGCTCACAGAGGCTGCCTTGTGCTGCTGG-AGTGCATA-GCCAGAGAGGCTCC-CACTCCAACAGAGGCCTCTGAGGCCTTGCTGGCCAGGGCTTTGGAAACTCTGACAGCGCTGCTTC---CCTCACCTCCTGATCTCC-TTTTTCTGCCCCTCTTACACTCTCTGAGGGGCTGCAGTTGCAAGAACCCAGAATCTCTGTCTTGGAGGTGGTGGTGGCGGGGGGGG-GGGGGCAGTTGAAGAGGGGCTTTGAATGGAGAGGGTCTGCACAATAAAGATGTAGTAAGCTAGGAGTCAAT-C-CAGAGGACTTCCTGGAGGAGGTGATGGTGGTGT--AGAGTCACGGA--GAGGGAGGAATAGGC---AGTCTCAGAGGACAGCAGCAAGGCCAAGTGAGAG-ACTG--GCAGAGATATACAGGTCCCCG-TTGGGTGGGGT--GAAGAGGG--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95281302 630 + 121039945 AGGCATGGTCA----ACATCAAGGCTCTGGGCCAGGCAGGAACTGAACTAGATGGTTGGCCCTAACCACTGAACCACCTGCCTGCAGCCCCCTCCCAGCAGA-AGAGAGTAG-AGCCTGTTTGGC--------------AGGAGTGGGAGGGTGGCAGGAAGTAGAGGTACTTTCCAGAGCGCTGGGGTCCGAATGGGTCCACTGAGGGGCTGGGCCCTGCTGCTTCCTGTGGGGCTGAGC-GGGAGGGGCTCGCACAGGCTGTCTTGTGCTGCTGG-AGCGCATG-GCCAGGCAGCCCCC-CATCCCAACAGAGGCCTCTGAGGCCTTGTTGGCCAGGGCTTTGGAAACTCTGACAGTGCTGCTTC---CCCCACCTCCTGGTCTCC-TTTTTCTGCCCCTCTTACACTCTCTAAGGGGCTTCAGTTGCAAGAATCCAGAATCCCTGTCTTGGAGGTGGT-----------GTG-GGGGGCAGTTGAAGAGGGGCTTCGAATGGAGAGGGTGTGCAGGATTAAGATGTAATAAACTAGGAGTCAAT-C-CAGAGGACTTCCTGGAGGAGGTGGCAGTGGT-------GTCACAGA--GAGGGAGGAATAGGT---GGTCTCAGAGGGCAGCAGCAAGGCCAAGTGAGAG-ACTC--G----------CAGGTCCCCC-TTGGGTGGGGC--GAGGAGGG--
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65371286 647 + 171882078 GGGCATGGTCA----ACGTCAGGAATCTAGGCCAAACAGGAACTGAAGGAGGTGGTTGGCTCTAACCACTGAACCATCTGCCTGCAGCCCCCTCCCAGCAGA-AGAGAGAAG-AGCCTGTTTGGC--------------CAGAGTGGAACGGTGGCAAGAAACAGAGGTACTTTCCAGAGCGCTGAGGTCTGAATGGGTCCACTGAGGGGCTGGGCCCTGCTGCTTCCTGTGGGGCTGAGC-GGGAGGGGCT--CAGAGGCTGCCTTGTGCTGCTGG-ATTGCATA-GCCAGTCAGGACCC-CACCCCAACAGAGGCCTCTGAGGCCTTGCTGGCCAGGGCTTTGGAAACTCTGACAGCGCCGCTTC---CCCCACCTTCTGATCTCC-TTTGTCTGCCCCTCTTACACTCTCTGAGGGGCTGCAGTTGCAAGAACCCAGAATCTGTGTCTTGGAGGTGGT-------GAGGGGC-GGGGGCAGTTGAAGAGGGGCTTTGAATGGAGAGGGTCTGCAGGATAAAGATTTAATAAGCTAGGAGTCAAT-C-CAGAAGACTTCCTGGAGGAGGTGATGGTGGTGT--AGAGTCACAGA--GAGGGAGGAATAGGC---AGTCTCAGAGGACAGCAGCAAGTCCAAGTGAGAG-ACTG--GCAGAGGTGTACAGGACCCCA-CTGGGTGGGGT--GAGGAGGG--
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50425391 650 -  58131712 AGGCTTGGTCA----ATGTCAGGGCTCTGGGCCAGGCCAGGAAGGAACTAGATGGTTGGCCCTAACCACTGAACCACCTGCCTGCAGCCCCCTTCCAGCAGA-AGACAGTAG-AGCCTGTTTGGC--------------TAGAGTGGGAGGGTGGCAGGAAGCAGAGGTACTTTCCAGAGTGCTGGGGTCTGAATGGGTCCATTGAGGGGCTGGACCCTCCTACTTCCTGTGGGGCTGAGT-GGAAGGGGCTCACACAGGCTGTCTTGTGCTGCTGG-AGCGCATA-GCCAGGCAGCCCCC-CATCCCAACAGAGGCCTCTGAGGCCTTGCTGGCCACGGCTTTGGAAACTCAGACAGCACCACTTC---ACCCACCTCCCAGTCTCCATTTTTCTGCCCCTTTTACACTCTCTGAGGGGCTGCAGTTGCAAAAACCCAGAATCCCTGTCTTGGAGGTGGT-------GGGGGATGGGGGGCATTTGAAGAGGGGCTTTGAATGGAGATGATGTGCCGGATAAAGACGTAATAAGCTAGAAGTCAAT-C-CAGAAGACTTCCTGGAGGAGGTGACGGTGGTGT--ACAGTCACAGA--GAGGGAGGAAGCAGC---AGTCTCTGAGGACAGCAGCAAGGCCAAGTGAGAG-ACTG--GCAGGGGTACACAGGTCCCCC-TTGTG-GGGGC--AAGGAGGG--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       363265 645 -   1458659 GGGCATGGTCA----ACGTCAGGAATCTGGGCCAAACAGGAACTGAAGGAGACGGTTGGCTGTAACCACTGAACCATCTGCCTGCAGCCCCCTCCTAGCAGA-AGAGAGAAG-AGCCTGTTTGGC--------------CAGAGTGGAACGGTGGCAAGAAACAGAGGTACTTTCCAGAG-GCTGGGGTCTGAATGGGTCCACTGAGGGGCTGGGCCCTGCTGCTTCCTGTGGGGCTGAGC-GGCAGGGGCTCACAGAGGCTGCCTTGTGCTGCTGG-ATTGCATA-GCCAGTCAGGACCC-CACACCAACAGAGGCCTCTGAGGCCTTGCTGGCCAGGGCTTTGGAAACTCTGACAGCGCCGCTTC---CCCCACCTTCTGATC----TTTGTCTGCCCCTCTTACACTCTCTGAGGGGCTGCAGTTGCAAGAACCCAGAATCTCTGTCGTGGAGGTGGT-------GAGGGGC-GGGGGCAGTTGAAGAGGGGCTTTGAATGGAGAGGGTGTGCAGGATAAATATTTAATAAGCTAGGAGTCAAT-C-CAGAAGACTTCCTGGAGGAGGTGATGGTGGTGT--AGAGTCACAGA--GAGGGAGGAATAGGC---AGTCTCAGAGGACAGCAGCAAGTCCAAGTGAGAG-ACTG--GCAGAGGTATACAGGACCCCA-CTGGGTGGGGT--GAGGAGGG--
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3805312 635 -   4111199 GGGCATGGTCA----ACGTCAGGAATCTGGGCCAAACGGGAACTGAAGGAGACGGTTGGCTCTAACCACTGAACCATCTGCCTGCAGCCCCCTCCCAGCAGA-AGAGAGAAG-AGCCTGTTTGGC--------------CAGAGTGGAACGGTGGCAAGAAACAGAGGTACTTTCCAGAGCGCTGGGGTCTGAATGGGTCCACTGAGGGGCTGGGCCCTGCTGCTTCCCGTGGGGCTGAGC-GGGAGGGGCTCACAGAGGCTGCTTTGTGCTGCTGG-ATTGCATA-GCCCGTCAGGACCC-CACCCCAACAGAGGCCTCTGAGGCCTTGCTGGCCAGGACTTTGGAAACTCTGACAGCGCCGCTTC---CCCCACCTTCTGATCTCC-TTTTTCTGCCCCTCTTACACCCTCTGAGGGGCTGCAGTTGCAAGAACCCAGAATCTCTGTCTTGGAGGTGGT-------GAGGGGC-GGGGGCAGTTGAAGAGGGGCTTTGAATGGAGAGGGTCTGCAGGATAAAGATTTAATAAGCTAGGAGTCAAT-C-CAGAAGACTTCCTGGAGGAGGTGATGGTGGTGT--AGAGT--CAGA--GAGGGAGGAATAGGC---AGTCTCAGAGGACAGCAGCAAGTCCAAGTGAGAG-ACTG--GCAGAGGTATACAGGACC-------------GT--GAGGAGGG--
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             401866 640 -   3282555 GGACATGGCCA----ACGTCAGGACTCTGGGCCAGGCAGGAACTGAAGTAGCTGGTTGGCCCTAACCACGGAACCACCTGCCCGCAACCCCCTCCCAGCAGG-AGAGAGTAG-AGCCTGTTTGGC--------------CAGAGTGGGAGGGTGGCAGGAAGCAGAGGTACTCTCCAGAGTGCGGGGGTCTGAATGGGTCCATTGAGGGGCTGGGCCCTGCTGCTTCCTGTGGGGCTGAGC-GGGAGGGGCTCACACAGGCTGCCTTGTGCTGCTGG-AGTGCATA-GCCAGGCAG-CCCC-CATCCCAACAGAGGCCTCTGAGGCTTTGCTGGCCAGAGCTTTGGAAACTCTGACAGTGCCACTCCCCACCCCACTTCCTGGTCTCC-TTTTTCTGCCCCTCTTACTGTCTCTGAGGGACTGCAGTTGCAAGAACCCAGAATCC----CTTGGAGGTCGC-------------G-GGGGGCAGTTGAAGAGAGGCTTCACATGGAGAGGGTGTGCAGGATAAAGATGTGATAAGTTAGGAGTCAAT-C-CAGAGGACTTCCTGGAGGAGGTGACAGTGGCGT--AGCATCACAAA--GAGGGAGGAATAGGC---AGTCTCAGAGGACAGCAGCAAGGCCAAGTGAGAG-ACTA--GCAGAGGTA-ACAGGTCCCCC-TTGGGTGGGGC--AAGGAGGG--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       191325 635 -   1024465 GGACATGGCCA----ATGTCAGGACTCTTGGCCAGGCAGGAACTGAAGTAGCTGGTTGGCCCTAACCACTGAATCACCTGCCTGCAACCCCCTCCCAGCGGG-AGAGAGTAG-AGCCTGCTTGGT--------------CAGAGTGGGAGGGTGGCAGGAAGCAGAGGTACTCTCCAGAGTGCTGGGGTCTGAATGGGTCCATTGAGGGGCTGGGCCCTGCTGCTTCCTGTGGGGCTGAGC-GGGAGGGGCTCACACAGGCTGCCTTGTGCTGCTGG-AGTGCATA-GCCAGGCAGCCCCC-CATCCCAACAGAGGCCTCTGAGGCTTTGCTGGCCAGAGCTTTGGAAACTCTGACAGTGCTACTC----TCCCCCTTCCTCGTCTCC-TTTTTCTGCCCCTCTTACTGCCTCTGAGGGAGTGCAGTTGCAAGAACCCAGAATCC----CTTGGAGGTGGT-------------G-GGGGGCAGTTGAAGAGGGGCTTCATATGGAGAGGGTGTGCAGGATAAAGATGTGAT--GTTAGGAGTCAAT-T-CAGAGGACTTCCTGGAGGCGGTGACAGTGGTGT--AGCATCACAGA--GAGGGAGGAATAGGC---AGTCTCAGAGGACAGCAGCAAGACCAAGTGAGAG-ACTA--GCAGGGGTA-GCAGGTCCCTC-TTGGGTGGGGC--AAGGAGGG--
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       992629 637 +   3745603 GGACCTGGCCA----ATGTCAGGACTCTGGGCCAGACAGGAACTGAAGTAGCTGGTTGGCCCTAACCACTGAACCACCTGCCCGCAACCCCCTCCCAGCAGG-AGAGAGTAG-AGCCTGTTTGGC--------------CAGAGTGGGAGGGTGGCAGGAAGCAGAGGTACTCTCCAGAGTCCTGGGGTCTGAATGGGTCCATTGAGGGGCTGGGCCCTGCTGCTTCCTGTGGGGCTGAGC-GGGAGGGGCTCACACAGGCTGCCTTGTGCTGCTGG-AGTGCATA-GCCAGGCAGCCCCC-CATCCCAACAGAGGCCTCTGAGGCCTTGCTGGCCAGAGCTTTGGAAACTCTGACAGTGCTACTC----CCCCTCTTCCTGGTCTCC-TTTTTCTGCCCCTCTTACTGTCTCTGAGGGACTGCAGTTGCAAGAACCCAGAATCC----CTTGGAGGTGGT-------------G-TGGGGCAGTTGAAGAGGGGCTTCATATGGAGAGGGTGTGCAGGATAAAGATATGATAAGTTAGGAGTCAAT-C-CAGAGGACTTCCTGGAGGAGGTGACAGTGGTGT--AGCATCACAGA--GAGGGAGGAATAGGC---AGTCTCAGAGGACCGCAGCAAGGCCAAGTGAGAG-ACTA--GCAGGGGTA-ACAGGTCCCCC-TTGGGTGGGGC--AAGGAGGG--
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67713171 575 - 124595110 AGTGTTAG----------GCAGGGCTCTGGGTCAGGC----ACTAAGGTGCACGGCTGGCCCTAACCACTGAACCACCTGCCTCTTGCTCCCTTCCCACAGG-AGAGAGCAGCAGCCTGTTTGAC--------------TA-AGTGGGAGGGTGGCAGGAAGCAGAGGTACTTTCCAGAGAGCTGGGGTCTGAATGAGCCCTTTGAGGGACTGGGCCCTGCTGTTTCCTGTGTG--------GAGAGGCACTCACACTGGCTGCCTTGTGTTGTTGG-AGTGTGCAGGCCAGGCAGCCCCCTTGTCAGAACAGAGGCCTCTGAAGCCAAGCTGGCTGGGGCTTTGGAAACTCTGACAGTAC---------CCCCACCTC---ACCTCCATACTTGTGCTCCACTCACCCT-TCTGACAGGATGCATT----------CAGAATTGCTGTCATTA----GGT-------------A-GGGGGCAGTTGGAGAGGACCTTCAAATATAAAGAGGGTGCAGGATGAAGAAATAACAAGCCAGAAGTCAATCC-CGGAGGACATCCTGGAGGAGGTGAGGGCGGCATAAAGCATCACAGA--GGAAGAGGAATAAAT---GATCTCAGGGAG-------AAGGATCGGTGGAAG-GTCG--GC-----TA----------------------GC--AATGGAGG--
i mm10.chr9                 C 0 C 0
s canFam3.chr30              38482722 642 +  40214260 GGACATCGTCATAGGGCCTCAGGGC-CCGTACCAGGCCGGAAGTGAAGGCGCTGGCTGGCTCTAACCCCTGAACCACCTGCCCCTAGCCCCCTCGCAGAAGA-GGAGAGGGCCGGCCTGTTTAGCCTTGTCCTCCAGG-CGGAGTGGGAGGGTGGCAGGAAGTAGAGGTACTTTCCAGAGAGCTGGGGTCTGAATGAGCCTATTGAGGGGCTGGGCCCTGCCGTTTCCTGTGGGCCTGGGCAGGGACGCGCTCACACAAGCCGCCTTGTGCGGCTGGAAGTGCACAGGCCAGGCGGCCCCCTCGTCCTAACAGAGGCCTCTGAGGCCTCGCTGGCCAGGGTTCTGGAAACTCTGACAGCGCCGTTCC---CCCCACGTCCCGGTCTCC-TGCTGCTGCCCCTC--GCCGTCTCTGATGGGCCGCAGCTGCAAGGACCCAGAACCCCGGTCCT----------------------G-GGAGACAGCTGGAGACGAGCTGTGAGTGGGGAGGCAGGGCAGGACGAAGCCGTGA---GCTAGGAGTCAGTTC-CAGAGGGCTTCCTTGGGGAGGTGACGCTGG------------------GAGAGAGGAGCAGGCGGGGGTTTCAAAGG---GCAGCAAGGCCAAGTGACAG-ACTGAAGCAGAGATGTGCGGGCTCTGGAACAGCTGGAGCCAGAGGAGGG--
i canFam3.chr30             I 63 N 0
s dasNov3.JH572216             842288 632 +   1040364 GGGCACGGTCA----AGCTCCGGGGTCT-GACCAGACAGG-ACTGCACCAGGTGGCCTGTCCTAACCACTGAACTACTTGTCT-CAGGCCCCTCCCAGTGGAGGGAGAGTAGCAATCTGTTTGGCCTGGTTCACGAGGCCGGAGTGGGAGGGTGGCAGGAAGCAGAGGTACTTTCCAGAGAGCTGGGGTCTGAATGGGCCCATTGAGGGGCTGGG-CCTGCTGCTTCCTGTGGGGCTGGGC-GGGAGGGGCGCACACAGGCTGCCTTGTGCGGCCGGGAGCGGCGG-GCCGGGCAGCCCCCTCACCCCAGCAGAGGTCTGGGAGGCTCTCCTAGCCCCGGCTTTGGAAACGCTGACAGTGCCACTC----CCCTACCTCCTG-TCTCC-TTCTGATTCTCGCTT----GTCTCTGAGGGGTTGTAGTTACAAGAACCCAGAAGTCCTGTTTGGGG-------------------G-GAGGAAAGTTGGGGAGGAG-----------------GTACAGGAGGAAGCAGGAATGAGCCAGGAGTCAAT-CGCAGAGGGCTTCTAGGGGGAGGTGAGGTTGGAAT--AGAGGAGCAGACTGGGAAGGGAATGGGC---ATTCTCAGTGGAGAGCAGCAAGGCCGAGTGAGAGAACTG--GCAGGGGTTCACAGGTCTCCC-CTGCGTGGG----CAACAGGGCA
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=106020.000000
s hg38.chr15_KI270850v1_alt    111836 21 +    430880 TTTCTGCTCCCTCACCCCCCA
s panTro5.chr15              17349026 21 -  83230942 TTTCTGCTCCCTCATCCCGCA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        34954 21 -    378907 TTTCTGCTCCCTCACCCCGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95281932 21 + 121039945 TTTCTGTTCCCTCACCCCCTA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65371933 21 + 171882078 TTTCTGCTCCCTCACCCCCTA
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50426041 21 -  58131712 TTTCTCCTCCCTCACTCCGTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1       363910 21 -   1458659 TTTCTGCTCCCTCACCCCCTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3805947 21 -   4111199 TTTCTGCTCCCTCACCCACTA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             402506 21 -   3282555 TTTCTGCTCCCTCACCTCCGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       191960 21 -   1024465 TGTCTGCTCCCTCACCTCCGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       993266 21 +   3745603 TTTCTGCTCCCTCACCTCCGA
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  67713746 21 - 124595110 TTTCTGTTCCCATGCCCCTTA
i mm10.chr9                 C 0 N 0
s dasNov3.JH572216             842920 21 +   1040364 GTTCTACCCCCTCATGCCCTG
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=45521.000000
s hg38.chr15_KI270850v1_alt    111857 9 +    430880 GAGCCTCTG
s panTro5.chr15              17349047 9 -  83230942 GAGCCTCTG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        34975 9 -    378907 GAGCCTCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95281953 9 + 121039945 CAGCCTCTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65371954 9 + 171882078 GAGCCTCTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr26              50426062 9 -  58131712 GAGCCTCTG
i chlSab2.chr26             C 0 n 0
s manLeu1.NW_012105520v1       363931 9 -   1458659 GAGCCTCTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3805968 9 -   4111199 GAGCCTCTG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             402527 9 -   3282555 GAGCATCTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       191981 9 -   1024465 GAGCATCTG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       993287 9 +   3745603 GAGCATCTG
i aotNan1.NW_018511953v1    C 0 C 0
s dasNov3.JH572216             842941 9 +   1040364 GGGGCTCTG
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=5500.000000
s hg38.chr15_KI270850v1_alt    111866 1 +    430880 G
s panTro5.chr15              17349056 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        34984 1 -    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95281962 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65371963 1 + 171882078 G
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       363940 1 -   1458659 G
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3805977 1 -   4111199 G
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             402536 1 -   3282555 G
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       191990 1 -   1024465 G
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       993296 1 +   3745603 G
i aotNan1.NW_018511953v1    C 0 C 0
s dasNov3.JH572216             842950 1 +   1040364 G
i dasNov3.JH572216          C 0 N 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50426071 0 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=8595.000000
s hg38.chr15_KI270850v1_alt    111867 2 +    430880 CT
s panTro5.chr15              17349057 2 -  83230942 CT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        34985 2 -    378907 CT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               95281963 2 + 121039945 CT
i nomLeu3.chr6              C 0 N 0
s macFas5.chr7               65371964 2 + 171882078 CT
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       363941 2 -   1458659 CT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3805978 2 -   4111199 CT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276             402537 2 -   3282555 CT
i saiBol1.JH378276          C 0 I 78989
s cebCap1.NW_016107979v1       191991 2 -   1024465 CT
i cebCap1.NW_016107979v1    C 0 I 75956
s aotNan1.NW_018511953v1       993297 2 +   3745603 CT
i aotNan1.NW_018511953v1    C 0 N 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50426071 0 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=593684.000000
s hg38.chr15_KI270850v1_alt    111869 544 +    430880 TATCACAGGATAAGAGCCAGCTAAGCTCCAGGGGCTTTCCAGGAAAAGTGTCTCTTGGAAAGGGTGTGACCTTTTCATCGGTCCTGACAGCACCCTAGAAATAGCTTGGCCTTTTCCCTCCCCTGAGCTCCACAGAGAACACAGCCAGCAGAAGACACATTCCCTGTCATCCAGAAATGGGTTTGATTCTCAGCTGAGGGACAGCAGGACTGGTAGAGACTGTCAGGCCACACAGCTACCTACAGAGCACCCCCATGCTTGGTCGGGGGTGGGAGGGATGGCAGGGTCTGGCTGTCCACAGGCCGGGCATGACAGTGGGGCGCACTGGAAGTGGCGCACTTTGGAGGGGCAATGTCAGGGGAGAGCTTCCTCTTGTTGGGCCACAAGACTCCACAAGGACAGCACGGTGACTGATTCCCAATGCTAGAGGCGAGGCAATCGGTCATGTGTAGgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATATACACACACATAtgtgtgtatatatatatgagggtgtgtgtatgtgtgtgt
s panTro5.chr15              17349059 524 -  83230942 TATCACAGGATAAGAGCCAGCTAAGCTCCAGGGGCTTTCCAGGAAAAGTGTCTCTTGGAAAGGGTGTGACCTTTTCATCGGTCCTGACAGCACCCTAGAAATAGCTTGGCCTTTTCCCTCCCCTGAGCTCCACAGAGAACACAGCCAGCAGAAGACACATTCCCTGTCATCCAGAAATGGGTTTGATTCTCAGCTGAGGGACAGCAGGACTGGTAGAGACTGTCAGGCCACACAGCTACCTACAGAGCACCCCCATGCTTGGTCGGGGGTGGGAGGGATGGCAGGGTCTGGCTGTCCACAGGCCGGGCATGACAGTGGGGTGCACTGGAAGTGGCACACTTTGGAGGGGCAATGTCAGGGGAGAGCTTCCTCTTGTTGGGCCACAAGACTCCACAAGGACAGCACGGTGACTGATTCCCAATGCTAGACGCGAGGCAATCGGTCatgtgtaggtgta--------------------tgtgtgtgtgtctatatacacacacatatgtgtatatatatatatgagggtgtgtgtatgtgtgtgt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        34987 532 -    378907 TATCACAGGACAAGAGCCAGCTAAGCTCCAGGGGCTTTCCAGGAAAAGTGTCTCTTGGAAAGGGTGTGACCTTTTCATCGGTCCTGACAGCACCCTAGAAATGGCTTGGTCTTTTCCCTCCCCTGAGCTCCACAGAGAACACAGCCAGCAGAGGACACATTCCCTGTCATCCAGAAATGGGTTTGATTCTCAGCCGAGGGACAGCAGGACTGGTAGAGACTGTCAGGCCACACAGCTGCCTACACAGCACCCCCATACTTGGTGGGGGGTGGGAGGGATGGCGGGGGCTGGCTGTCCACAGGCCGGGCATGACAGGGAGGCTCACTGGAAGTGGCGCACTTTGGAGGGGCAATGTCAGGGGAGAGCTTCCTCTTGTTGGGCCACAAGACTCCACAAGGACAGCACGGTGACTGATTCCCAGTGCTAGAGGCGAGGCAATCGGCCAtgtgtaggtgta------------tgtgtgtgtgtgtgtgtgtCtatatacacacacatatatgtgtatatatatacgagggtgtgtgtatgtgtgtgt
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65371966 492 + 171882078 TATCACAGGATAAGAGCCAGCTAAGCTCCA-GGGCTTTCCAGGAAAAGTGTCACTTGGAAAGGGTGTGACCTTTTCACCGCTCCCAACAGCACCCTAGAAATGGTTTGGCCTTTCCCCTCCC--GAGTTCCACAGAGAACACAGCCAGCAGAGGACACATTATCTGTCATCCAGAAATGGATCTGATTCTCAATCAAGGGACAGCAGGACTGGTAGAGACTGTCAGGCCACACGGCTGCCTGCACAGCACCCCCATGCTTGGTGAGGGGTGAGGGGGATGGCGGGGGCTGGCTGTCCACAGGCCAGACATGACAGGGAGGCTCACCAGAGGTGGCGCACTTTGGAGGGACAAAGTCAGGGGAGAGCTTCCTCTTGTTGGGCCACAAGACTCCACAAGGACAGCACAGTGACTGATTCCCAGCGCTAGAGGCGAGGCAATCGGCCACgtgtaggtgta------------tatctatgtgtgtgtgtgtgtat----------atatatgtgtAttta---------------------------
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       363943 486 -   1458659 TATCACAGGATAAGAGCCAGCTAAGCTCCA-GGGCTTTCCAGGAAAAGTGTCACTTGGAAAGGGTGTGACCTTTTCACCGCTCCCAACAGCACCCTAGAAATGGTTTGGCCTTTCCCCTCCC--GTGTTCCACAGAGAACACAGCCAGCAGAGGACACATTATCTGTCATCCAGAAATGGGTCTGATTCTCAATCAAGGGACCGCAGGACTGGTAGAGACTGTCAGGCCATACGGCTGCCTGCACAGCACCCCCATGCTTGGTGAGGGGTGAGGGGGATGGCGGGGGCTGGCTGTCCACAGGCCAGACATGACAGTGAGGCTCACCAGAGGTGGCGCACTTTGGAGGGACAAAGTCAGGGGAGAGCTTCCTCTTGTTGGGCCACAAGACTCCACAAGGACAGCAGAGTGACTGATTTCCAGCGCTAGAGGCGAGGCAATCGGCCACgtgtaggtgta------------tatctatgtgtgtgtgtg----------------tatatgtgtAttta---------------------------
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3805980 488 -   4111199 TATCACAGGATAAGAGCCAGCTAAGCTCCAGGGGCTTTCCAGGAAAAGCGTCCCTTGGAAAGGGTGTGACCTTTTCACCGCTCCCAACAGCACCCTAGAAATGGTTTGGCCTTTCCCCTCCC--AAGTTCCACAGAGAACACAGCCAGCAGAGGACACATTATCTGTCATCCAGAAATGGGTCTGATTCTCAATCAAGGGACAGCAGGACTGGTAGAGACTGTCAGGCCACACGGCTGCCTGCACAGCACCCCCATGCTTGG-GGCGAGTGAGGGGGATGGCGGTGGCTGGCTGTCCACAGGCTAAACATGATAGGGAGGCTCATCGGAGGTGGCACACTTTGGAGGGACAAAGTCAGGGGAGAGCTTCCTCTTGTTGGGCCACAAGACTCCAGAAGGACAGCACGGTGACTGATTCCCAGCGCTAGAGGCGAGGCGATCAGCCAtgtgtaggtgta------------tatctatgtgtgtgtgtgtg--------------tgtatgtgtAttta---------------------------
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       191993 75956 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50426071   0 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276             402539 78989 -   3282555 I

a score=2739.000000
s hg38.chr15_KI270850v1_alt    112413 8 +    430880 ATACA-TAA
s panTro5.chr15              17349583 8 -  83230942 ataca-taa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        35519 8 -    378907 atata-taa
i gorGor5.CYUI01015946v1    C 0 C 0
s saiBol1.JH378276            2790029 9 +   3282555 ATACAGTAA
i saiBol1.JH378276          n 78989 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       191993 75956 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3806468 0 -   4111199 C
e manLeu1.NW_012105520v1       364429 0 -   1458659 C
e chlSab2.chr26              50426071 0 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372458 0 + 171882078 C
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=27461.000000
s hg38.chr15_KI270850v1_alt    112421 16 +    430880 ----------tttatttatttagatg
s panTro5.chr15              17349591 16 -  83230942 ----------tttatttatttagatg
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        35527 16 -    378907 ----------tttatttatttagatg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25557151 16 - 121039945 ----------ttttttttttgagaca
i nomLeu3.chr6              N 0 C 0
s macFas5.chr7               65372458 16 + 171882078 ----------tttatttatttagatg
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       364429 16 -   1458659 ----------tttatttatttagatg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3806468 16 -   4111199 ----------tttatttatttagatg
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2790038 26 +   3282555 tttttttgcttttggtttttgagaca
i saiBol1.JH378276          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       191993 75956 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50426071  0 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=45651.000000
s hg38.chr15_KI270850v1_alt    112437 17 +    430880 gagtcttgctctgccac
s panTro5.chr15              17349607 17 -  83230942 gagtcttgctctgtcac
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        35543 17 -    378907 gagtcttgctctgttgc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25557167 17 - 121039945 gagtctcgctctgttgc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65372474 17 + 171882078 gagtcttgctctgtccc
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       364445 17 -   1458659 gagtcttgctctgtccc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3806484 17 -   4111199 gagtcttgctctgtccc
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2790064 17 +   3282555 gagtctcactctgttgt
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1      3021659 17 +   3745603 gagtcttgctctgttgt
i aotNan1.NW_018511953v1    N 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       191993 75956 -   1024465 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50426071  0 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=843080.000000
s hg38.chr15_KI270850v1_alt    112454 256 +    430880 ccaggctggacctcagtggtgcgatctcgactcactgaaacctctgcctcctgggttcaagcaattctcctgcctcagcctgccgagtagctgggactacagtcacctgccaccacaccgggctaatttttgtatttttagtagagatgaggtttcaccatattggccaggctggtctcaaactcctgacctt--gtgatctgcctgcctcggcctcccaaagtgctgggattacaggtgtgagccacagcacccagc
s panTro5.chr15              17349624 256 -  83230942 ccaggctggacctcagtggtgcgatctcgactcactgaaacctctgcctcctgggttcaagcaattctcctgcctcagcctgccgagtagctgggactacagtcacctgccaccacaccgggctaatttttgtatttttagtagagatgaggtttcaccatattggccaggctggtctcaaactcctgacctt--gtgatctgcctgcctcggcctcccaaagtgctgggattacaggtgtgagccacagcacccagc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        35560 256 -    378907 ccaggctggagtgcagtggcgcaatctcgactcactgaaacctctgcctcctgggttcaagcaattctcctgcctcagcctgccgagtagctgggactacagtcacctgccaccacaccgggctaatttttgtatttttagtagagatgaggtttcaccatattggccaggctggtctcaaactcctgacctt--gtgatctgcctgcctcggcctcccaaagtgctgggattacaggtgtgagccacagcacccagc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25557184 258 - 121039945 ccaggctggagtacaatagcatgatctcggcttaccacaacctctgtctcccagattcaagcaattctcctgcctcagcctcccaagtagctgggattacaagcatgcgacaccatgcccagttaatttttgtatgtttagtagagacagggtttcaccatgttggccaggctgatctcaaactcttggcctcaagtgatccgcccgcctcagcttcctaaagtgctgagattacaggcatgagccaccgcacctggc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65372491 256 + 171882078 ccaggctggagtgcagtggcgcgatctcggcaaactgaaacctctgcctcctgggttcaagcgatgctcctgccccagcctgccaagtagctgggactacaggcacccgccaccactaccggttgctttttgtatttttagtagagatgaggtttcaccatattggcgaggctggtctcaaactcctgacctt--gtgatctgcctgcctcggcctcccaaagtgctaggattacaggcgtgagccacagcacccggc
i macFas5.chr7              C 0 n 0
s manLeu1.NW_012105520v1       364462 256 -   1458659 ccaggctggagtgcagtggcgcgatctcggcaaactgaaacctctgcctcctgggttcaagcgatgctcctgccccagcctgccaagtagctgggactacaggcacctgccaccactaccggctgctttttatatttttagtagagatgaggtttcaccatattggcgaggctggtctcaaactcctgacctt--gtgatctgcctgccttggcctcccaaagtgctaggattacaggcgtgagccacagcacccggc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3806501 256 -   4111199 ccaggctggagtacagtggcgcgatctcggctcactgaaacctctgcctcctgggttcaagcgatgctcctgccccagcctgccaagtagctgggactacaggcacccaccaccactactggctgcttttcgtatttttagtagagatgaggtttcaccatattggcgaggctggtctcaaactcctgacctc--gtgatctgcctgccttggcctcccaaagtgctaagagtacaagcgtgagccacagcacccggc
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2790081 258 +   3282555 ccaggctggagtgcagtggtgtgatctcgactcaccacaacctccgcctcccatgttcaagcaattctcctacctcagcctcccaagtagccgggattacaagcatgcgccaccatgcctggttaatttttctattttcagtagagatggggcttcaacatgctggctaggctgatgttgaactcccggcttcaggtgatctgctcacctcagcttccaaaaatgctgggattacaggcgtgagccatggcacctggc
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       747044 258 +   1024465 ccaggctggagcgcagtggtgtgatctagactcaccacaacctccacctcccatgttcaagcaattctcctacctcagcctcccaagtagctgggattacaagcatgcgccaccatgcctggttaatttttgtattttcagtagagatggggcttcaacatgctggctaggctgatcttgaactcctggcctcaggtgatccgctcgcctcggcttccaaaaatgctgggattacaggcatgagccgtggcacctggc
i cebCap1.NW_016107979v1    n 75956 C 0
s aotNan1.NW_018511953v1      3021676 258 +   3745603 ccaggctggaaagcagtggtgtgatctcgactcaccacaacctccgcctcccatgttcaagcaattctcctacctcagcctcccaagtagctgggattacaagcatgcaccaccatgcctggttaatttttgtattttcagtagagatggggcttcaacatgttggctaggctgatcttgaactcctggtttcaggtgatccactcgcctcaggttccaaaagtgctgggattgcaggcgtgagccatggcacctggc
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50426071   0 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=56249.000000
s hg38.chr15_KI270850v1_alt    112710 35 +    430880 TATT---------------------TATAGAtatttatagaatatgacctcaacta
s panTro5.chr15              17349880 35 -  83230942 tatt---------------------tatagatatTtatagaatatgacctcaacta
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        35816 35 -    378907 tatt---------------------tatagatatttatagaatatGACCTCAACTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25557442 53 - 121039945 cagtaaatg---ttttttaaaatgatgtaaaactatatagaatatgacctcaacta
i nomLeu3.chr6              C 0 C 0
s manLeu1.NW_012105520v1       364718 25 -   1458659 -------------------------------TATTTATAGAACATGACCTCAACTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3806757 25 -   4111199 -------------------------------TATTTATAGAATATGACCTCAACTA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2790339 52 +   3282555 ----cAGTAAATGTTTTTAAAATgatataaaactatatagaatatgacctcaacta
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       747302 52 +   1024465 ----cAGTAAACGTTTTTAAAATgatataaaactatatagaatatgacctcaacta
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3021934 52 +   3745603 ----cggtaaatgttttgaaaatgatacaaaagtatacagaatatgacctcaacta
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530            6753661 14842 -  36342412 T
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50426071  0 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=367517.000000
s hg38.chr15_KI270850v1_alt    112745 128 +    430880 tttaaacatatctgtaagggtataagtactttgataacaaag-aagcaat------acatactgatagaaactagctatcatgtcaacagtactta-tattaggtagagaaattatgtgagatttttatttttt---------------ta
s panTro5.chr15              17349915 128 -  83230942 tttaaacatatctgtaagggtataagtactttgataacaaag-aagcaat------acatactgatagaaactagctatcatgtcaacagtggtta-tattaggtagagaaattatgtgagatttttatttttt---------------ta
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        35851 127 -    378907 TTTAAACATATCTGTAAGGGTATAAGTACTTTGATAACAAAG-AAGCAAT------ACATACTGATAGAAACTAGCTATCATGTCAACAGTAGTTA-TATTAGGTAGAGAAATTATGTGAGATTTTT-TTTTTT---------------TA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25557495 136 - 121039945 tttaaacatatgtataaaggcatatgtattttactagcaaag-aaaaaat------atataatggtagaaaataaccatcatgtcaacagtggtta-tattaggtagagaaattatgggagattttattttttt-------ttcctgtcta
i nomLeu3.chr6              C 0 C 0
s manLeu1.NW_012105520v1       364743 134 -   1458659 TTTAAACATATCTGTAAGGGTATATGTACTTTGATAACAAAA-AACAAAAAAAAATACATACTGATAGAAACTAGCCATCATGTCAACAGTGGTTA-TATTAGGTAGAGAAATTATGTGAGATTTTAATTATTT---------------TA
i manLeu1.NW_012105520v1    C 0 n 0
s colAng1.NW_012116021v1      3806782 129 -   4111199 TTTAAACATATCTGTAAGGGTATATGTACTTTGATAACAAAA-AAAAAAAA-----ACATACTGATAGAAACTAGTCATCATGTCAACAGTGGTTA-TATTAGGTAGAGAAATTACGTGAGATTTTAATTTTTT---------------TA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2790391 144 +   3282555 tttaaacatatgtacaaatgtgtatgtattttactagcaaagaaaaaaat------atatactggtagaaaacagccatcatgtcaacagtggttg-tactaggtagagaaattacgggagactttaattttctttcttttttcctttcta
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       747354 143 +   1024465 tttaaacatatgtataaaggtgtatgtattttactagcaaag-aaaaaat------atatactggtagaaaacagccatcatgtcaacagtggttg-tgttaggtagagaaattatgggagattttaattttctttcttttttcctttcta
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3021986 143 +   3745603 tttaaacatatgtataaaggtgtatgtattttactagcaaag-aaaaaat------atatactggtagaaaatagccatcgtgtcaacagtggttg-tatgaggtaaataaattatgggagattttaatttttcttcttttttcctttctg
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530           29591776 128 +  36342412 TTTAAACATACGTGTAAGGGATTATGTATTTTACTTGTACAG-Gaaaaa-------aaatactagtagaaaacagctgtcatgtcaacagtggttacttttatgtagagaaactgtgggagattttaatttttt---------------tc
i otoGar3.GL873530          T 96407 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50426071   0 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=117766.000000
s hg38.chr15_KI270850v1_alt    112873 50 +    430880 ----tattttactaa---tcttctcaataatggttgcttataagttttataatcaag-
s panTro5.chr15              17350043 50 -  83230942 ----tattttactaa---tcttctcaataatggttgcttataagttttataatcaag-
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        35978 50 -    378907 ----TATTTTACTAA---TCTTCTCAATAATGGTTGCTTATAAGTTTTATAATCAAG-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25557631 50 - 121039945 ----tattttactaa---ttttctcaacaatggttgctcatgagttttataatcaag-
i nomLeu3.chr6              C 0 C 0
s manLeu1.NW_012099388v1       207018 46 -    383355 ----tattttactaa---ttttctcaacaatggttacttacgagttttataat-----
i manLeu1.NW_012099388v1    I 37769 C 0
s colAng1.NW_012116021v1      3806911 50 -   4111199 ----TATTTTACTAC---TGGTCTCAATAATGGTTCTTTATAAGTTTTATAATCATG-
i colAng1.NW_012116021v1    C 0 I 1
s saiBol1.JH378276            2790535 51 +   3282555 ----tagtttactcatttttttttttacaatggttgcac--gagttttataatcaag-
i saiBol1.JH378276          C 0 I 1
s cebCap1.NW_016107979v1       747497 50 +   1024465 ----cagtttactca---ttttcttcacaatggttgcacatgagttttataatcaag-
i cebCap1.NW_016107979v1    C 0 I 1
s aotNan1.NW_018511953v1      3022129 50 +   3745603 ----tagtttactaa---ttttctttacaatggttgcacatgagttttataatcaag-
i aotNan1.NW_018511953v1    C 0 I 1
s otoGar3.GL873530           29591904 50 +  36342412 ttttggcttttctag---ttttcTC-ACAATGGCTTA----AAGTTTTATAACCAAAG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr26              50426071  0 -  58131712 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=2822659.000000
s hg38.chr15_KI270850v1_alt    112923 733 +    430880 aaaaaagaTTTCTAAAG-TTTTTGCAAAATGGAAAGTTATGCTTCTTTATATACTAAAGACAAAAACAAAACTTCCTATTTGAATACCTTTGACTTTTACTGCAGACTTACAGACCCTTGAAAGAAAAGGCAATTCCCTCCCACTAGTTCTGGTGTCATTCTCCCCA----TCTCTCCCTTCACTTCCACCTTGGTCTTCTTTCTACTTCCCACCTTGGCTAGTGGTCTCCACCCAAAATGCTTGCTTGGCTTAATGGTTAGAATTCAGGGAAAAAGAGATCCCGAATTGCTAATCTAAACTAAGATTATACATGTGGGAAAT-AATAAAGAGAAA--------CCAGGTAGTAAATAAGATTTGGAGGAC---TT----------------------------AAAATA--------CCCAGACTTTAATTCCTCTAAGATT-----ATAGT----------Tattaatcatgtttttat--ataatattatcatttaacatttaatttctaaatataaTGTTCATGAGGAAAAGAGAAAATAGCTTGGTTTCTTTCCTTACCGAACTGTTGTCCTTAGTATCTTCTAGACGTTCCAGAACTGATGTCAGATTTGGCTCATCAGAGTCCACAGACCATATCGGTGAAGAAGATGAATAGGATTCCTGTTTAACCCAGAGACACCTATGTTAAATG------TTTACATACAGACTAACCCAAATATGCAATTAAACCACACCACTAAATGGCAAGATGACCATGGATTTAAACAAAATGTATCAG-GGGGAAAAGGCAACACGTTTAAA
s panTro5.chr15              17350093 731 -  83230942 aaaaaagaTTTCTAAAG-TTTTTGCAAAATGGAAAGTTATGCTTCTTTATATACTAAAGACAAAAACAAAACTTCCTATTTGAATACCTTTGACTTTTACTGCAGACTTACAGACCCTTGAAAGAAAAGGCAATCCCCTCCCACTAGTTCTGGTGTCATTCTCCCCA----TCTCTCCCTTCACTTCCACCTTGGTCTTCTTTCTACTTCCCACCTTGGCTAGTGGTCTCCACCCAAAATGCTTGCTTGGCTTAATGGTTAGAATTCAGGGAAAAAGCGATCCCGAATTGCTAATCTAAACTAAGATTATACATGTGGGAAAT-AATAAAGAGAAA--------CCAGGTAGTAAATAAGATTTGGAGGAC---TT----------------------------AAAATA--------CCCAGACTTTAATTCCTCTAAGATT-----ATAGT----------TATTAATCATGTTTTTAT--ATGATATTATCACTTAACATTTAAATTCTAAATATAATGTTCATGAGGAAAAGAGAAAATAGCTTGGTTTCTTTCCTCACCGAACTGTTGTCCTTAGTATCTTCTAGACGTTCCAGAACTGATGTCAGATTTGGCTCATCAGAGTCCACAGACCATATCGGTGAAGAAGATGTATAGGATTCCTGTTTAACCCAGAGACACCTATGTTAAATG------TTTACATACAGACTAACCCAAATATGCAATTAAACCACACCACTAAATGGCAAGATGACCATGGATTGAAACAAAATGTAT--G-GGGGAAAAGGCAACACGTTTAAA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        36028 735 -    378907 AAAAAAGGTTTCTAAAG-TTTTTGCAAAATGGAAAGTTATGCTTCTTTATATACTAAAGACAAAAGCAAAACTTCCTATTTGAATACCTTTGACTTTTACTGCAGACTTACAGACCCTTGAAAGAAAAGGCAATTCCCTCCCACTAGTTCTGGTGTCATTCTCCCCATCTCTCTCTCCCTTCACTTCCACCTTGGTCTTCTTTCTACTTCCCACCTTGGCTAGTGGTCTCCACCCAAAATGCCTGCTTGGCCTAATGGTTAGAATTCAGGGAAAAAGAGATCCCGAATTGCTAATCTAAACTAAGATTATACATGTGGGAAAT-AATAAAGAGAAA--------CCAGGTAGTAAATAAGATTTGGAGGAC---TT----------------------------AAAATA--------CCCAGACTTTAATTCCTCtaagatt-----atagt----------tattaatcatgtttttat--ataatattatcacttaacatttaatttctaaatataatgttCATGAGGAAAAGAGAAAATAGCTTGGTTTCTTCCCTCACTGAACTGTTGTCCTTAGTATCTTCTAGACGTTCCAGAACTGATGTCAGATTTGGCTCATCAGAGTCCACAGACCATATCGGTGAAGAAGATGAATAGGATTCCTGTTTAACCCAGAGACACCTATGTTAAATG------TTTACATACAGCCTAACCCAAATATGCAATTAAACCACACCACTAAATGGCAAGATGACCATGGATTGAAACAAAATGTAT--G-GGGGAAAAGGCAACACGTTTAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25557681 728 - 121039945 aaaaaaaGTGTTAAAAA-TTTTTTCAACATGGAAAGTTATATTTCTTTATATACTAAAAACAAAAATAAAACTTTCTATT-------------CTTTTACTGCAGACTTACAGACCCTTGAAAGAAAAGGCAATTCCCTCATACTAGTTCTGGTGTCATTCTCCCCA----TCTCTCCCTTCACTTCTACCTTGGTCTTTTTTCTGCTTCCCACCTTGGCTAGTGGTCTCTACCCAAAATTCTTGTTTGGCTTAATGGTTAGAATTCAGGGAAAAAGAGATCCCTAATTTGTAATCTAAATTAAGGTTACACATGTGGGAAAT-AAAAGAGAGAGA--------CCAGGTAGTAAATAGAATTTGAAGGACAAAAA----------------------------AAAAAA--------ACTAGTCTTTAATTCCTACAAGATT-----ATAAT----------CATTAATCATGCTTTTAT--ATCATATTATCTCTTAACATTTAATTTCTATATGTAATGTTCACGAGGAAAAGAGAAAATAGCTTGGCTTATTTTCTTACCAAATTGTTGTTCTTAGTATCTTCTAGACGTTCCAGAACTGATGTCAGATTTGGGTCTTCAGAATCCACAAACCATATTGGTGAAGAAGATGGATAGGATTCCTGTTTAACACAGAGACACCTATGTTAATTGTTTACATTTACATACAGACTAACCCAAATATGCAATTAAACCACACCACTAAACGGCAAGATGATCATGGATTTAAACAAAATGTAT-GG-GGGGAAAAGGCAACACATTAAAA
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20382562 732 -  24206276 AAAAAAGGTTTTTAAAA-TTTTTCCAACATGGAAAGTTATATTTCTTTATATACTAAAAACAAAAACAAAACTTTCTATTTGAATATCTTTGACTTTTACTGCAGACTTACAGACCCTTGAAAGAAAAGGCAATTCCCTTCCACTAGTTCTGGTGTCATTCTCCCCA----TCTC-TCCTTCACTTCCACCTTGGTCTTTTTTCTACTTCCCACCTTGGCTAGTGGTCTCTACTCAAAATGCTTGCTTGGCTTAATGTTTCGAATTCAGGGAAAAAGAGATCCTGAATTCCTAATCTAAACTGAGGTTATATATGTGGGAAAT-AATAAAGAGAAT--------CCAGATAGTAAGTAAGATTTGGAGGGC---TT----------------------------AAAATA--------CCCAGACTTTAATTCCTGTAAGATT-----ATAGT----------CTTTAATCATGTTTTTTTTAATCGTATTATCTCTTAACATTTAATTTCTAAATATAATATCCATGAGGAAAAGAGAAAATAGCTTGGCTTCTTTCCTCACAGAATTGTTGTTCTTAGTATCTTCTAGACATTCCAGAACTGATGTCAGATTTGGCTCATCAGAGTCCACAAACCATATTGGTGAAGAAAATGAACAGGATTCCTGTTTAACACAGAGACACCTATGTTAAACA------TTTACATACAGACTAACCCAAATATGCAATTAAACCACACCACTAAATGGCAAGATGACCATGGATTTAAACAAAATGTGT--G-GGAGAAAAGGCAACACATTAAAA
i chlSab2.chr29             I 47568 C 0
s manLeu1.NW_012099388v1       207064 740 -    383355 aaaaaaaGTTTGTAAAA-TTTTTGCAACATAGAAAGTTATACTTCTTTATATACTAAAAACAAAAATAAAACTTTCTATTTGGATACCTTTGACTTTTACTGCAGACTTACAGACCTGTGAAAGAAAAGACAATTCCTTCCCACTAGTTCTGGTGTCATTTTCCCCA----TCTCTTCCTTCACTTCTACCTTGGTCTTTTTTCTACTTCCCACCTTGGCTAGTGGTCTCTACTCAAAATGCTTGCTTAGCTTAATGGTTAGAATTCAGGGTAAAAGAATTCCCGAATTCCTAATCTAAACTAAGGTTATACATGTGGGAAAT-AATAAATACTACCTTATTTACCAGGTAGCACATAAGATTTGGAGGAC---TT----------------------------AAAATA--------CCCAGACTTTAATTCCTCTAAGATT-----ATAGT----------TACTAATCATGCTTTTAT--ATAATATTATCACTTAACATTTAATTTCTAAATATCATGTTCATGAGGAAAAGAGAAAATAGCTTGGCTTCTTTCCTCACCAAATTGTTGTTCTTAGTATCTTCTAGACGTTCTAGAACTGACATCAGATTTGGCTCATCAGAGTCCACAAACCATATCGGTGAAGAAGATGAATAGGATTCCTGTTTAACACAGAGACACCTATGTTAAACA------TTTACATACAGACTAACCCAAATATGCAATTAAACCACACCATTAAATGGCAAGATGACCATGGATGTAAACAAAACACAT--GTGGGAAAAAGGCAACACACGTAAA
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3806962 733 -   4111199 AAAAAAGGTTTCTAAAGTTTTTTGAAAAATGGGAAGTTATACTTCTTTATATACTAAAGAAAAAAACAAAACTTCCTATTTGAATACCTTGGACTTTTACTGCAGACTTACAGACCCTTGAAAGAAAAGGCAATTCCCTCCCACTAGTTCTGGTGTCATTCTCTCCA----TCTCTGCCTTCACTTCCACCTTGGTCTTTTTTCTACTTCCCACCTTGGCTACTGGTCGCTACCCAAAACACTTGGTTGGCTTAACGGTTAGAATTCAGGGAAAAAGAGATCCTGAACTCCTAATCTAAACTAAGGTT-TAGATGTGGGAAAT-AATAAAGAGAAA--------CCAGGTAGTAAATAAGATTTGCAGGAC---TT----------------------------AAAATA--------CCCAGACTTTAATTCCTCTAAGATT-----ATAGT----------TATTAATCATGCTTTTAT--ATCATATTATCACTTAACATTTAATTTGTAAATATAATGTTCATGAGGAAAAGAGAAAATAGCTTGGCTTTTTTCCTCACCGAATTGTTGTTCTTAGTATCTTCTAGACATTCCAGAACTGATGTCAGATTTGGCTCATCAGAGTCCACAAACCATAGTGGTGAAGAAGATGAATAGGATTCCTGTTTAGCACAGAGACACCTGTGTTAAACA------TTTACATACATACTAACCCAAATATGCAATTAAACCACACCACTAAGTGGCAAGATGACCATGGATTTAAACAAAATGTATCAG-GGGGAAAAGGCAACACATTAAAA
i colAng1.NW_012116021v1    I 1 C 0
s saiBol1.JH378276            2790587 751 +   3282555 aaaaaC-GTTTTAAAAA-TTTGTGCAAAATGGAAACTTGTATTTCTTTAAATACTAAAAACAAAAATAAAACTTTGTATTTGAATATCTTTGACTTTTACTGCAGACTCACACACCCTTGAAATAAAAGGTGATTCCCTAACACTAGTTCTGGTGTCATTCTACCCT----TCTCTCCCTTCACTTCCACCATGGTCTTTTTTCTACTTTCCACCTTGGCTAGTGGTCTCCACCAAAAAAGCTTGCTTGGTTTAATGGTTAGAATTCAGGGAAAAAGAGAGCCCTAATTTGGAATCTAAATTAAGGTTATACATGTTGGAAAT-AAGAAAGAGAAA--------CCAAGTAGTAAATAGAATTTGAAGaaa---ttaataaaaa-----------------aaaaaaaaa--------CCTAGTCTTTAATTCCTCCAAGATT-----ATAATTATAATGTAGCACGATTAGTGCTTTTAA--ATCATAGTATCGCTTAACATTTAATTTCTAAATATAATGTTCAGGAGGAAAAGAGAAAATAGCTTGGCTTATTTTCTTACCGAATTGTTGTTCTTAGTATCTTCTAGACGTTCCAGAACTGATGTCAGATTTGGGTCATCAGAGTCCACAAACCATATCGGTGAAGAAGATGGATAGGATTCCTGTTTAAAACAGAAACACCTAAGTTAAACA------TTTACATACAGACTAACCTAAATATGCAATTAAACCACACCACTAAATGGCAAGATGACCACGGATTTAAACAAAATGTCT--G-GGTGGGGAGGCAACACATGAAAT
i saiBol1.JH378276          I 1 C 0
s cebCap1.NW_016107979v1       747548 750 +   1024465 aaaaaaGGTTTTAAAAA-TTTTTGCAAAATGGAAACTTGTATTTCTTTAAATACTAAAAACAAAAATAAAACTTTGTATTTGAATACCTTTGACTTTTACTGCAGACTCACACACCCTTGAAATAAAAGGCGATTCCCTAACACTAGTTCTGGTG--------ACCT----TCTAGCCCTTCACTTCCACCATGGTCTTTTTTCTACTTTCCACCTTGGCTAGTGGTCTCCACCAAAAAAGCTTGCTTGGTTTAATGGTTAGAATTCAGGGAAAAAGAGATCCCTAATTTGGAATCGAAATTAAGGTTATACATGTTGAAAAT-AAGAAAGAGAAA--------CCAGGTAGTAAATAGAATTTGaagaaa----taataaaaaaaataaaaaaaaaatttaaaaaaaaa--------CCTAGTCTTTAATTCATCCAAAATT-----ATAAT----------CATTAATCGTGCTTTTAA--ATCATAGTATTGCTTAACATTTAACTTCTAAATATAATGTTCAGGAGGAAAAGAGAAAATAGCTTGGCTTATTTTCTTACCGAATTGTTGTTCTTAGTATCTTCTAGACGTTCCAGAACTGATGTCAGATTTGGATCATCAGAGTCCACAAACCATATTGGCGAAGAAGATGGGTAGGATTCCTGTTTAAAACAGAAACACCTATGTTAAACA------TTTACATACAGACTAACCTAAATATGCAATTAAACCACACCACTAAATGGCAAGATGACCACGGATTTAAACAAAATGTAT--G-GGCGGGGAGGCAACACATGAAAA
i cebCap1.NW_016107979v1    I 1 C 0
s aotNan1.NW_018511953v1      3022180 734 +   3745603 aaaaaaGGTTTTAAAAA-TATTTGCAAAATGGAAACTCATATTTCTTTAAATACTAAAAACAAAAATAAAACTTTGTGTTTGAATACCTTTGACTTTTACTGCAGACTCACACACCCTTGAAAGAAAAGGCGATTCCCTAACACTAGTTCTGGTGTCATTCTACTCT----TCTCTCCCTTCACTTTCACCACAGTCTTTTTTCTACTTTCCACCTTGGCTAGTGGTCTCCACCAAAAAAGCTTGCTTGGTTTAATGGTTAGAATTCAGGGAAAAAGAGATCCTTAATTTGGAATCTAAATTAAGGTTATATGTGTTGGAAAT-AAGAAAGAGAAA--------CCAGGTAGTAAATAGAATTTGAAGAAA---TT-------------------------AAAAAAAAA--------CCTAGTCTTTAATTCCTCCAAGATT-----ATAAT----------CATTAATCATGCTTTTAA--ATCATAGTATCGCTTAACATTTAATTTCTAAATATAATGTTCAGGAGGAAAAGAGAAAATAGCTTGGCTTATTTTCTTACCGAATTGTTGTTCTTAGTATCTTCTATACGTTCCAGAACTGATGTCAGATTTGGGTCATCAGAGTCCACAAACCATATTGGTGAAGAAGATGGATAGGATTCCTGTTTAAAACAGAAACACCTATGTTAAACA------TTTACATACAGATTAACCTAAATATGCAATTAAACCACACCACTAAATGGCAAGATGACCATGGATTTAAACAAAATGTAT--G-GGCGGGGAGGCAACACATGAAAA
i aotNan1.NW_018511953v1    I 1 C 0
s otoGar3.GL873530           29591954 715 +  36342412 AAAACAGGTGTTCAAAA-TTTTTGTAAAATGGTAAGTTACATTTCtttatatattaaaaaaaa-----------tctatttaaaCATTTTTGGCACTTACTACAGACTTACA-ATCCTTGAA--GAAAGAACATTCCCTAACATTAGTACAGGTGTCATTCTATCAA----TTTC--CCTTCTCATCTACCTTGGTCTTC-TTCCACTTCCCACCTTGGCTAGTGGTCTCT-CCCAAAATGTTTGCTCACTTTAGTGGTTAGAACTCAGGG-AAAAGAGACCGATGATTCCTAATCTAAATTAAGGCTATACATGTGGGAAATGAAAAAGGAGAGA--------CTAAGTAATAAAGAGAATTTGAAAGAC---TT----------------------------AAAAAACACACACCCCCTGGTTTTAACCCCTCTAATATTATCAAATAAT----------CATTAATCATGCTTTTAT--AGCACATTATCTCTTAATACTTAAT---TGTATAAAATGTTC---TAAAAAAAAAAATGTAGCTTGGCTTATTTTCTCACCGAATTGTTGTTCTTAGTATCTTCTAGACGTTCCAGAACTGATGTCAGATTGGGGTCATCAGAGTCCACAAACCATATGGGTGAAGAAGATGGATAGGATTCCTGTT----ATAGAAACATCTATGTTAAACA----CATTTACATACAGCCTGAC----AGTTATAATGAAACCACATCACTAAATGGCAAGAGGATCATGGATTTAAGTAACTTATCA--GAGGGGAAAAAGCAACACATTAAGA
i otoGar3.GL873530          C 0 I 522
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=28865.000000
s hg38.chr15_KI270850v1_alt    113656 8 +    430880 CCCATGTG
s panTro5.chr15              17350824 8 -  83230942 CCCATGTG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        36763 8 -    378907 CCCATGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25558409 8 - 121039945 ACCATGTG
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20383294 8 -  24206276 CCCATGTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       207804 8 -    383355 CCCACGTG
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3807695 8 -   4111199 CCCATATG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2791338 8 +   3282555 CCCATGTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       748298 8 +   1024465 GCCATGTG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3022914 8 +   3745603 CCCATGTG
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530           29592669 522 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=2566820.000000
s hg38.chr15_KI270850v1_alt    113664 696 +    430880 AGGAGCTGGACTTCTGAGACAGCCATTCTCCTTGCATA-GCACTGTCTGC-TGCTACAGCTCATAGAAGTCAACAATTTTCTTCAACACtggtaggcagcctct-aaatggccctgatcaccctcacctcctgccattcacacccttgtaaaatt-ccacccctggacctagtgactcacttctaacaaagagaatacagcaaaag---t--aacatcgcttctgaggtgaggctacaaggagactac--gatgcctgccttagtcacccttctcctgctctttccattgctccctctgatggaagccagttgccatgtgatgaggtgccctatggagaggcccacgtgacaaggtattgtaaaaagcctctgaccaatagccatctagaaacggagg--cccagtccagcagcctct---gagatgaatcctgccaac----------ctgagcttggagacagattctctccctatcctgccttgggatgatcacagccaccatc--aacaccttcactgcctggtgagaggcc--aagccagtgaacccaaggt-aaactggaca--gaatcctgacccacagaaac--tgagataatgtttgttattttaagctgctcaatttgttacagagcaatagataactaaCTCAAACACCATAAAATTCTAATATTTTATTCTATCACACAAACCAAGTAATACCAAGTAAATGCCATTACTATACAT-ATA
s panTro5.chr15              17350832 696 -  83230942 AGGAGCTGGACTTCTGAGACAGCCATTCTCCTTGCATA-GCACTGTCTGC-TGCTACAGCTCATAGAAGTGAACAATTTTCTTCAACACtggtaggcagcctct-aaatggccctgatcaccctcacctcctgccattcacacccttgtaaaatt-ccacccctggacctagtgactcacttctaacaaagagaatacagcaaaag---t--aacatcacttctgaggtgaggctacaaggagactac--gatgcctgccttggtcacccttctcctgctctttccattgctccctctgatggaagccagttgccatgtgatgaggtgccctatggagaggcccacgtgacaaggtattgtaaaaggcctctgaccaacagccatctagaaacggagg--cccagtccaacagccttt---gagatgattcctgccaat----------gtgagcttggagacagattctctccctatcctgccttgggatgatcacagccaccatc--aacagcttcactgcctggtgagaggtc--aagccagttaacccaaggt-aaactgcaca--gaattctgacccacagaaactgtgagataatgtttgttgttttaagctgctaaatttgttacagagcaatagataactaattcaAACACCATAAAATTCTAACATTTTATTCTATCACACAAACCAAGTAATACCAA-TAAATG-CATTACTATACAT-ATA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        36771 696 -    378907 AGGAGCTGGACTTCTGAAACAGCCATCCTCCTTGCATA-GCACTATCTGC-TGCTACAGCTCATAGAAGTCAACAATTTTCTTCAACACtggcaggcagcctct-aaatggccctgatcaccctcacctcctgccattcacacccttgtaaaatt-ccacacctggacctagtgactcacttctaacaaagagaatacagcaaaag---t--aacatcgcttctgaggtgaggctacaaggagactac--gatgcctgccttggtcacccttctcctgctctttccattgctccctctgatggaagccagttgccatgtgatgaggtgccctatggagaggcccacgtgacaaggtattgtaaaaggcctctgaccaatagccacctagaaacggagg--cccagtccaacagcctct---gaggtgaatcctgccaac----------ctaagcttggagacagattctctccctatcctgccttgggatgatcacagccgccatc--aacaccttcactgcctggtgagaggcc--aagccagtgaacccaaggt-aaactggaca--gaatcctgacccacagaaac--tgagataatgtttgttattttaagctgctcaatttgttacagagcaatagataactaaCTCAAACACCATAAAATTCTAATATTTTATTCTATCACACAAACCAAGTAATACCAAGTAAATGCCATTACCATACAT-ATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25558417 711 - 121039945 AGCAGCTGGACTTTTGAGACAACCATTCTCCTTGCACA-GCACTGTCTGT-TGCTACAGCTCATAGAAGTCAACGATTTTCTTCAACACtggtaggcagcctctaaaatggccccgatcaccctcacctcctggcattcacacccctgtaaaattcccgcccctggacctagtgactcacttctaacaaagagaatacagcaaaagtaat--aacatcacttctgagattaggctacatagagactac--gatgtctgccttgctcatccttctcctgctctttccattgctccctctgatggaaaccagttgccgtgtgatgaggtgccctatggagaggcccacatggcgaggtattataaaagtcctcagatcaacagccatctagaaatggtgg--cccagtcccacagcctgt---gagatgaatcctgccaacatctacataagtgagcttggagactgattctctccctatcctgccttaggatgatcacagctgctacc--aacaccttcactgcctggtgggaggcc--aagccagtgaacccaaggt-aaattgcaca--aaatcctgacccacagaaatggtgagataatg-ttgttgctttaagctgctaaatttgttacagagcaatagaaaactaattcaAATACCATAAAATTCTAATGTTTTAATCTATCACGCAAACCAAGTACTACCAA-GAAATGCCATtactacatat-ata
i nomLeu3.chr6              C 0 I 340
s chlSab2.chr29              20383302 698 -  24206276 AGGAGCTGGACTTCTGAGACAGCCATTCTCCTTGCATA-GCACTGTCTGC-TGCTACAGCTCATAGAAGTCAACAATTTTCTTCAACACtggcaggcagcctct-aaatggccctgatcaccctcacctcctgccattcacatccttgtaaaattcccactcctggacctagtgactcacttctaacaaagagaatacagcaaaag---t--aacgtcacttctgagattaggttacaaggagactat--gatgcctgccttggtcacccttctcctgctcttttcattgctccctctgatggaaaccagttgccatgtgatgaggtgccctatggagaggcccacatggcaaggtattgtaaaaggcctctgaccagtagccatctagaaatggagg--cccagtccaacagcctct---gagatgaatcctgccaat----------gcaagcttggaggtggattctctccctatcctgccttgggatgatcacagccgccacc--aacacattcactgcctggtgagaggcc--aagccagtgaacccaaggt-aaactgcaca--gaatcctgacccacagaaactgtgagataaggtttgttgttttaagccactaaatttgttacagagcaatagataactaattcaAACACCATAAAATTTGAACATTTTATTCTATCACACGAACCAAGTAATACCAA-TAAGTGCCATTACTATACAT-ATA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       207812 707 -    383355 AGGAACTGGACTTCTGAGACAGCCATTCT--TTACATA-GCACTGTCTGC-TGCTACAGCTCATAGAAGTCAACAATTTTCTTCAACACtggcaggcagcctct-aaatggccctgatcaccctcacctcctgccattcacacccttgtaaaattcccactcctggacctagtgactcacttctaacaaaccaaatacagcaaaagtaat--aacatcacttctgagattaggctacaaggagactac--gatgcctgctttggtcacccttctcctgctctttccattgctccctctgatggaagccagttgccatgtgatgaggtgccctatggagaggcccacatggcaaggtattgtaaaaggcctccaaccaatggccatctagaaacggagg--cccagtccaacagc--ct---gagatgaatcctgccaacatctacacgagtgagcttggagaaggattctctccctatcctgcctcatgatgatcactgccgccacc--aacaccttcactgcctagtaagaggcc--aaaccagtgaactcaaggt-aaactgcaca--gaatcctgacccacagaaactgtgagataatgtttgttgttttaagctgctaaatttgttacagagcaatcgacaactaattcaAACACCATAAAATTCTAACATTTTATTCTATCACACAAACCAAGTAATACCAA-GAAAAGCCATTACTATACAT-ATA
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3807703 703 -   4111199 AGGCGCTGGACTTCTGAGACAACCATTCTCCTTGCATA-GCACTGTCTGC-TGCTACAGCTCATAGAAGTCAACAATTTTCTTCAACACtggtaggcagcctctaaaatggccctgatcaccctcacctcctgccattcacacccttgtaaaacttccacccctggacctagtgactcacttctaacaaagagaatacagcaaaaataat--aacatcacttctgaggtgaggctacaaggagactat--gatgcctgccttggtcacccttctcctgttctctccattgctccctctgatggaagccagtagccatgtgatgaggtgccctatggagaggcccacatggcaaggtattgcaaaagacctctgaccagtagccatctagaaaaggagg--cccagtccaacagcctct---gagatgaatcctgccaac----------gtgagcttggagacggattctctccctatcctgccttggaatgatcacagccacctcc--aacaccttcactgcctggtgagaggcc--aagccagtgaatccaaggt-aaactgcaca--gactcctgacccacagaaactatgagataacatttattgttttaagctgctaaatgtgttacagagcaatagataagtaatTTAAACACCATAAAATTCTAACATTTTATTCTATCACATGAACCAAGTAATACCAA-TAAATGCCATTACTATCCATAATA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2791346 685 +   3282555 CGGAGCTGGACTTCTAAGA----CTTTCTCCTTGCATG-GCACTGCCTGC-TGCGACAGCTCAGACAAGTCAACAATTTTCTTCAACACtggtaggcagcctct-aagtggccccgatcaccctcacctcctggcattcacacccttgtaagattccttcccctggacctagtgactcacttctaacaacgagaatacagcaaaagtcct--aacatcgcttctgagatcaggctacaaagagacgat--gacgtctgccttgctcatccttctcccactcttgccattgctccctccgatggaagccagttgccatgtgacgaggtgccctat--------cca-----caaggtattggaaaagacccttgaccaatagccat-tagaaacggaca--cccagtccgacagcctgt---gagatgaatcctgccaacatctacatgagcgagcttggagacggagtctct-cctatcctgccttgggatgatcaccgctgccacc--aacaccttcactgcctgatgagaggcc--aagccagtgaacccaaggt-aaactgcaca--gaatcctgacccacag-aactgtgagataatgtttgttgctttaacctgctaaatttgttacagagcaatagataactaaCTCACAAACCataaaattataatatttttatCTATCACACAAACCAAGTACTACCAA-GAAATGACATTACTATT-------
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       748306 674 +   1024465 AGGAGCTGGACTTCTAAGACAGCCATTCTCCTTGCATA-GCACTGTCTGC-TGCTACAGCTCATACAAGTCAACAATTTTCTTCAACACtggcacgcagcctct-aaatggccccaatcaccctcacctcctggcattcacacccttgtaaaattccttcccctggacctagtgactcacttctaacaaacagaatacagcaaaagtcac--aacgtcacttctgagattaggctacaaagagactat--gatgtctgccttgctcatctttctcctactctttccattgctccctctgatggaagccagttgccatgtgatgaggtgccctat--------cca-----caaggtattgtataaggcccttgaccaatagccat-tagaaacggaca--ccccgtccaacagcc--t---gagatgaatcctgc---------catgagtgagcttgaagacagattgtct-cctatcctgccttgggatgatcgctgctgccacc--aacaccttcactgcctgatgagaggcc--gagccagtgaacccaaggt-aaactgcaca--gaatcctgacccacag-aactgtgagataatgcctgttgctttaagctgctaaatttgttacagagcaacaga----taactcacacaCCATAAAATTCTAATATTTTTATCTATCACACAAACCAAGTACTACCAA-GAAATGCCATTACTATT-------
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3022922 609 +   3745603 AGGAGCTGGACTTCTAAGA--GTCATTCTCCTCGCATA-GCACTGTCTGC-TGCTACAGCTCATACAAGTCAACAATTTTCTTCAACACtggcaggcagcctct-aaatggccccgatcaccctcacctcctggcattcacatacttgtaaaattccttcccctggacctagtgactcacttctaacaaagagaatacagcaaaagtcat--aacatcacttctgagattaggc-----------------------------------------------------------------------------tgccatgtgatgaggtgccctat--------cca-----cagggtattgtaaaaggcccttgaccaacagccat-tagaaacagaga--cccggtccaacagcctgt---gagatgaatcctgccaacatctacacgagtgagctcggagacggattctct-cctatcctgccttgggatgatcactgctgccacc--aataccttcactgcctggtgagaggcc--aagccagtgaacccaaggt-aaactgcaca--gaatcctgacccacag-aactgtgagataatgtttgttgctttaagctgctaaatttgttacagagcaatagat---TAATTCACATACCATAAAATTCTAATATTTTTATCTATCACACAAACCAAGTACTACCAA-GAAATGCCATTGCTATT-------
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530           29593191 706 +  36342412 AGCAGTTAGACTTTTGAGACAACCATTCTCCTTGCATACCCATGGTCTGTGTGCCACAGCTCCTCGCA-TCAATGATGTTCTTGCACtgcagtaggcagcctctcaaatggacccaataatcctcacctccacatattcacacccttgtaaaatt-cctcccctggacctactga--cacctttgaca----gaatacaggaaaagtaatggaatgtcacctctatgagtaggttgcaaaaagagtatagaacgtctgcct--gctgactctctcctgctctttctattgcttcctccagtggaagttggctgccaagtggtgagctgccctatggagaggcccacatggcaaagaattgaaaaagacttctgaccaatagtcagctagcaaatgagggtctcagtccaacagcctgtgaagagatgaatcctgccaac---tgtgtgagtgagct-agagacagattctctccccgtccaatcctgaggtgactgcagcctccacctaaataccttta------agtgagagaccctgacccagcatacttgaggtaaaactgcacactgacacctgacccacagaaac--tgtgataatgtttatagttttaagctgctacatttgttacagggcagtagataactaattcaAACATCATGAAATCC-AGTA-TTTATTCCACCACATGAACTGAATACTACCAT-AAAATGCTATCAACACATAC-ATA
i otoGar3.GL873530          I 522 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=596936.000000
s hg38.chr15_KI270850v1_alt    114360 182 +    430880 -TTTTTGTAACACAATTACATGTGA-TTTTTT--------AAAAA-----AGCTA-------ATGAAC---TATGCATTATGTGCTTTCACCCACTAACAGACGTTCCCGCTGTTACTTTGTACTGTTCTCTATTATAAATTGGGGAAAAACCATTATTATTATATATTAGTTTCAGAATAACTAGGTTCAAGTCACAGAAAACAAT
s panTro5.chr15              17351528 177 -  83230942 -TTTTTGGAACACAATTACATGTGATTTTTTT--------TGAAA-----AGCTA-------ATGAAC---TAAGCATTATGTGCTTTCACCTGCTAATAGACATTTACTCTG-----TTGTAGGATTTTCCATTATAAATTGGAGAAAAGCCATTATTATTATATATTAGCTTCAGAAGAACTAGGTTCAAGTCACGGAAATCCA-
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        37467 182 -    378907 -TTTTTGTAACACAATTACATGTGA-TTTTTT--------AAAAA-----AGCTA-------ATGAAC---TATGCATTATGTGCTTTCACCCACTAACAGACGTTCCCGCTGTTACTTTGTACTGTTCTCTATTATAAATTGGGGAAAAACCATTATTATTATATATTAGCTTCAGAATAACTAGGTTCAAGTCACAGAAAACAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25559468 183 - 121039945 -TTTTAAAAACACAATTACATGTGATTTTTTT--------AAAAA-----AGCTA-------ATGAAC---TAAGCATTATGTGCTTTCACCCACTGACAGACATTTACTCTGTTACTTTGTATGGTTTTCTATTATAAATTGGGGAAAAGCCATTATTACTATATATTAGCTTCAGAACAACTAGGTTCAAGTCAAGGAAAACAAT
i nomLeu3.chr6              I 340 C 0
s chlSab2.chr29              20384000 193 -  24206276 -TTTTCAGAACACAATTACATGTGA-TTTTTT---------AAAAAAGCTAATGAACTAAACATGAAC---TAAGTATTATGTGCTTTCACCCACTAATAGACATTCATTCTGTTATGTTGTCCTGTTTTCTATTACAAATTGGGGAAAAGCCATTATTATTATATATTAGCTTCAGAAGAACTAGTTTCAGGTCATGgaaaaccat
i chlSab2.chr29             C 0 I 33
s manLeu1.NW_012099388v1       208519 174 -    383355 -TTTTCAGAACACATTTACATGTGA-TTTTTT---------AAAA-----AGTGA-------ATGGAC---TAAGCATTATGTGCTTTCACCCACTA----ACATTTACTCTGTTACTTTGTACTGTTTTCTATTACAAATTGAGGAGGATCC---ATTATTATATATTAGCTTCAGAAGAACCAGGATCAAGTCATGGAAAACAAT
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3808406 184 -   4111199 -TTTTTAGAATACAATTACATGTGA-TTTTTTT------TAAAAA-----AGCTA-------ATGAAC---TAAGCATTATGTGCTTTCACCCACTAACAAACATTCCCTCTGTTACGTTGTACTGTTTTCTATTATAAATTGGGGAAAAGCCAGTATTATTATCTATTAGCTTCAGAATAACTAGGTTCAAGTCATGGAAAACAAC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2792031 190 +   3282555 -TTTTTAAAACACAATTACATGTGa-tttttaaaaaaaaaaaaaa-----actta-------ataaaC---TAAGCATCATGTGCTTTCACCCACTAACAGACATTTGCTCTGTTACTTTGTATGGTTTTCTTTTGTAAACTGGGGAAAAGCCATTATTATTATATATAAGCTTCAGAACAACTAAGTTCAAGTCATAGAAAACAAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       748980 185 +   1024465 -TTTTT-AAACACAATTACATGTGA-TTT----AAAAAAAAAAAA-----AGTTA-------ATAAAC---TAAGCATCATGTGCTTTCACCCACTAACAGACATTTGCTCTGTTACTTTGTATGGTtttcttttgtaaattggggaaaagccattattattatatataagcttcagaacaactaagttcaagtcatggaaaacaat
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3023531 185 +   3745603 -TTTTTTAAACACAATTACATGTGA-TTTTTTT-----AAAAAAA-----AGTTA-------ATAAAC---TAAGCGTCATGTGCTTTCACCCACTAATAGACATTTGCTCTGTTACTTTGTATGGTtttcttttgtaaattggggaaaagccattattatcatatataagcttcagaacaactaagttcaagtcatggaaaacaat
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530           29593897 165 +  36342412 TTTTCTTAAACACAATTATGTGTTG-ATT------------AAAA-----AGGTA-------ATGAACTAATAAGCATTATGTGCTTTCATCCATTA----ACATTTACTTTGTTCATTTGTGCTGTTTCCTATTATGAGTTGGGGAAAAG--ATTATTACTAGCTTTTAGGTGCTG---AACTAGGTTCAAGTTAAAG--------
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=57132.000000
s hg38.chr15_KI270850v1_alt    114542 37 +    430880 TTTGCACAAACAACTTTAGGCAACACTGCTTTGAAAA
s panTro5.chr15              17351705  6 -  83230942 -------------------------------TGAAAA
i panTro5.chr15             C 0 I 11
s gorGor5.CYUI01015946v1        37649 37 -    378907 TTTGCACAAACAACTTTAGGCAACACTGCTTTGAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25559651 37 - 121039945 TTCACAGAAACGATTTTAGGAAACACTGCTTTGAGAA
i nomLeu3.chr6              C 0 C 0
s manLeu1.NW_012099388v1       208693 37 -    383355 TTCACACAAACAACTTTAGGAAACACTGCTTTGAAAA
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3808590 15 -   4111199 CTTGCACAAACAACT----------------------
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2792221 37 +   3282555 TTCACACAAACAATTTTAGGAAACACTGCTCTGAGGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       749165 37 +   1024465 tttgcacaaacaattttaggaaacactgCTCTGAGGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3023716 37 +   3745603 ttcgcacaaacaattttaggaaacactgCTCTGAGGA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530           29594062 14 +  36342412 -----------------------CACTGCTTTGAGAA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr29              20384193 33 -  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=13618.000000
s hg38.chr15_KI270850v1_alt    114579 9 +    430880 CTGTAATCT
s gorGor5.CYUI01015946v1        37686 9 -    378907 CTGTAATCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25559688 9 - 121039945 CTATAATCT
i nomLeu3.chr6              C 0 C 0
s manLeu1.NW_012099388v1       208730 9 -    383355 CTGTAATCT
i manLeu1.NW_012099388v1    C 0 C 0
s saiBol1.JH378276            2792258 4 +   3282555 CTA-----T
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       749202 9 +   1024465 CTATAATCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3023753 9 +   3745603 CTATAATCT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530           29594076 9 +  36342412 TTATAATCT
i otoGar3.GL873530          C 0 I 1213
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3808605 0 -   4111199 C
e chlSab2.chr29              20384193 33 -  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e panTro5.chr15              17351711 11 -  83230942 I

a score=40610.000000
s hg38.chr15_KI270850v1_alt    114588 25 +    430880 GAGTTAAAGCTGAAGCCACAGAAAC
s gorGor5.CYUI01015946v1        37695 25 -    378907 GAATTAAAGCTGAAGCCACAGAAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25559697 25 - 121039945 GATTTATAGCTGAAGCCACAGAAAC
i nomLeu3.chr6              C 0 C 0
s manLeu1.NW_012099388v1       208739 25 -    383355 GAAATACAGCTGAAGCCACAGAAAC
i manLeu1.NW_012099388v1    C 0 C 0
s saiBol1.JH378276            2792262 25 +   3282555 AATTTATAGCTGAAGCCACAGAAAC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       749211 25 +   1024465 AATTTATAGCTGAAGCTACAGAAAC
i cebCap1.NW_016107979v1    C 0 I 41
s aotNan1.NW_018511953v1      3023762 25 +   3745603 AATTTATAGCTGAAGCCACAGAAAC
i aotNan1.NW_018511953v1    C 0 I 41
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530           29594085 1213 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3808605  0 -   4111199 C
e chlSab2.chr29              20384193 33 -  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e panTro5.chr15              17351711 11 -  83230942 I

a score=10977.000000
s hg38.chr15_KI270850v1_alt    114613 23 +    430880 CAAATA------------TTTACTGAAGGTTCCTT
s gorGor5.CYUI01015946v1        37720 23 -    378907 CAAATA------------TTTACTGAAGGTTCCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25559722 35 - 121039945 TCAATATTTTTAAAGCATTTTATCAAATGTTCTTT
i nomLeu3.chr6              C 0 C 0
s manLeu1.NW_012099388v1       208764 23 -    383355 CAAATA------------TTTACCAAAGGTTCTTT
i manLeu1.NW_012099388v1    C 0 I 16
s saiBol1.JH378276            2792287 33 +   3282555 --AATGTTTTTATAGCATTTTATCAAATGttcttt
i saiBol1.JH378276          C 0 C 0
e aotNan1.NW_018511953v1      3023787 41 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749236 41 +   1024465 I
e otoGar3.GL873530           29594085 1213 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3808605  0 -   4111199 C
e chlSab2.chr29              20384193 33 -  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e panTro5.chr15              17351711 11 -  83230942 I

a score=162.000000
s hg38.chr15_KI270850v1_alt    114636 3 +    430880 TTT
s gorGor5.CYUI01015946v1        37743 3 -    378907 TTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25559757 1 - 121039945 T--
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012116021v1      3808605 3 -   4111199 TTT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2792320 3 +   3282555 ttt
i saiBol1.JH378276          C 0 I 1057
e aotNan1.NW_018511953v1      3023787 41 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749236 41 +   1024465 I
e otoGar3.GL873530           29594085 1213 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012099388v1       208787 16 -    383355 I
e chlSab2.chr29              20384193 33 -  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e panTro5.chr15              17351711 11 -  83230942 I

a score=2599.000000
s hg38.chr15_KI270850v1_alt    114639 3 +    430880 AAG
s panTro5.chr15              17351722 3 -  83230942 CAG
i panTro5.chr15             I 11 C 0
s gorGor5.CYUI01015946v1        37746 3 -    378907 AAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25559758 3 - 121039945 AAG
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20384226 3 -  24206276 cag
i chlSab2.chr29             I 33 C 0
s colAng1.NW_012116021v1      3808608 3 -   4111199 AAG
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3023787 41 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749236 41 +   1024465 I
e otoGar3.GL873530           29594085 1213 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012099388v1       208787 16 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2792323 1057 +   3282555 I

a score=3727.000000
s hg38.chr15_KI270850v1_alt    114642 11 +    430880 AAAAGCAAGAT-
s panTro5.chr15              17351725 10 -  83230942 AAAAACAAG-T-
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        37749 11 -    378907 AAAAACAAGAT-
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20384229 10 -  24206276 aaaaACAAG-T-
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3808611 11 -   4111199 AAAAACAAG-AT
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3023787 41 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749236 41 +   1024465 I
e otoGar3.GL873530           29594085 1213 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012099388v1       208787 16 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25559761  0 - 121039945 C
e saiBol1.JH378276            2792323 1057 +   3282555 I

a score=131234.000000
s hg38.chr15_KI270850v1_alt    114653 127 +    430880 Gggccgggcacggtggctcgcgcctctaatctcagcactttgggaggccgaggtgggcggatcacgaggtcaggagatcgagaccgtcctggctaacacggagaaaccccatctctactaaaaaa--at
s panTro5.chr15              17351735 124 -  83230942 Tggccgggcgtgatggctcacgcctgtaatcccggcactttgggagtccaaggtgggtggatcacgaggttaggagatcgaga-catcctggccaacatggtgaaaccccttctctaccaaaata----
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        37760 127 -    378907 Gggccgggcacggtggctcgcgcctctaatctcagcaccttgggaggccgaggtgggcggatcacgaggtcaggagatggagactgtcctggctaacatggagaaaccccatctctactaaaaaa--at
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20384239 125 -  24206276 Tggctggtcacggtggctcatgcctgtaatcctggcactttgggaggccgaggcaggtggatcacaaggtcaggagatcgagaccatcctggccaacatggtgaaaccccgtctccactaaaata----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       208803 125 -    383355 Tggctgggcatggtggctcatgcctgtaatgctggctctttggaaggccgaggtgggtggatcatggggtcaggaaattgagaccatcctggccaacatgatgaaaccctgtctctaataaaata----
i manLeu1.NW_012099388v1    I 16 C 0
s colAng1.NW_012116021v1      3808622 129 -   4111199 Gggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggataacgaggtcaggagatcgagaccatcctggctaacaggatgaaaccccatctctactaaaaaaaaat
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3023787  41 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749236  41 +   1024465 I
e otoGar3.GL873530           29594085 1213 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25559761   0 - 121039945 C
e saiBol1.JH378276            2792323 1057 +   3282555 I

a score=52193.000000
s hg38.chr15_KI270850v1_alt    114780 42 +    430880 acaaaaaaattagctgggcgcgctggcgggtgcctgtagtcc
s panTro5.chr15              17351859 40 -  83230942 --aaaacaattagccaggtgtggtggcatgtgcctgtagtcc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        37887 42 -    378907 acaaaaaaattagctgggcacgctggcgggtgcctgtagtcc
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20384364 40 -  24206276 --aaaacaattagccagacatggtggcatgtgcctgtagtcc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       208928 40 -    383355 --aaaacagttagccaggcatggtggagggtgcttgtagtcc
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3808751 42 -   4111199 acaaaaaaattcgccgggcatggtgccgggcacctgcagtcc
i colAng1.NW_012116021v1    C 0 I 314
s otoGar3.GL873530           29595298 42 +  36342412 accaaaaaaatggccgggcgttgtggcaggcgcctgtggtcc
i otoGar3.GL873530          I 1213 C 0
e aotNan1.NW_018511953v1      3023787 41 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749236 41 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25559761  0 - 121039945 C
e saiBol1.JH378276            2792323 1057 +   3282555 I

a score=156967.000000
s hg38.chr15_KI270850v1_alt    114822 116 +    430880 cagctactcaggaggctgaggcaggggaatcacttgaacccaggaggcagaggtttcagtgggccgagat-gt-ccactgcactccaggctggc----gatagagcaagactccatctcaaa
s panTro5.chr15              17351899 117 -  83230942 cagctactcaagaggctgagagaggggaatcgcttgaacccaggaggcagaggtttcagtgagctgagat-gtgccactgcactccagcctgga----gacagagcaagaccccatctcaaa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        37929 116 -    378907 cagctactcaggaggctgaggcaggggaatcacttgaacccgggaggcagaggtttcagtgggctgagat-gt-ccactgcactccaggctggc----gatagagcaagactccatctcaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20384404 117 -  24206276 cagttactcaggaggctgaggcaggtgaatcacttccacctgggaggcagaggtttcagtgagctgagat-gtgccactgcactccagcctagt----gacagagcaagacttcatctcaaa
i chlSab2.chr29             C 0 I 81
s manLeu1.NW_012099388v1       208968 118 -    383355 catctacttaggaggctgaggtaggggtatcacctgaacctgggaggcggaggttgcagttagctaagatcatgccactgtactccagcctggt----gacacagcaaggctctgtctaaaa
i manLeu1.NW_012099388v1    C 0 I 5
s colAng1.NW_012116021v1      3809107 121 -   4111199 cagctactcaggaggctgaggcaggggaattgcttgaacccgggaggcagaggtttcagtgagctgagat-gtgccactgcactccagcgtggcgatagatagagcaagattctgtctcaaa
i colAng1.NW_012116021v1    I 314 I 3
s otoGar3.GL873530           29595340 116 +  36342412 cagctacttgggaggctgaggcaggagactcgcttgagcccaggagttggagattgctgtgagctgtgat-g--ccatggcactctacccagggg---gatagcttgaggctctgtctcaaa
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3023787  41 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749236  41 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25559761   0 - 121039945 C
e saiBol1.JH378276            2792323 1057 +   3282555 I

a score=6224.000000
s hg38.chr15_KI270850v1_alt    114938 13 +    430880 --aaaca--aacaaaca
s panTro5.chr15              17352016 13 -  83230942 --aaaaa--aaaaaaaa
i panTro5.chr15             C 0 I 17
s gorGor5.CYUI01015946v1        38045 15 -    378907 --aaacaacaacaacaa
i gorGor5.CYUI01015946v1    C 0 C 0
s manLeu1.NW_012099388v1       209091 13 -    383355 --aaaga--aagaaaga
i manLeu1.NW_012099388v1    I 5 I 28
s colAng1.NW_012116021v1      3809231 13 -   4111199 --aaata--aataaata
i colAng1.NW_012116021v1    I 3 I 10
s otoGar3.GL873530           29595456 15 +  36342412 aaaacca--aaaaaaca
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3023787 41 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749236 41 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr29              20384521 81 -  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25559761  0 - 121039945 C
e saiBol1.JH378276            2792323 1057 +   3282555 I

a score=6912.000000
s hg38.chr15_KI270850v1_alt    114951 4 +    430880 aaaa
s panTro5.chr15              17352046 4 -  83230942 aaaa
i panTro5.chr15             I 17 C 0
s gorGor5.CYUI01015946v1        38060 4 -    378907 aaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20384602 4 -  24206276 aaaa
i chlSab2.chr29             I 81 C 0
s manLeu1.NW_012099388v1       209132 4 -    383355 aaaa
i manLeu1.NW_012099388v1    I 28 C 0
s colAng1.NW_012116021v1      3809254 4 -   4111199 aaaA
i colAng1.NW_012116021v1    I 10 C 0
s otoGar3.GL873530           29595471 4 +  36342412 aaaG
i otoGar3.GL873530          C 0 I 406
e aotNan1.NW_018511953v1      3023787 41 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749236 41 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25559761 0 - 121039945 C
e saiBol1.JH378276            2792323 1057 +   3282555 I

a score=5595.000000
s hg38.chr15_KI270850v1_alt    114955 4 +    430880 gaaa
s panTro5.chr15              17352050 4 -  83230942 gaaa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        38064 4 -    378907 gaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20384606 4 -  24206276 gaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       209136 4 -    383355 gaaa
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3809258 4 -   4111199 GAAA
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3023787 41 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749236 41 +   1024465 I
e otoGar3.GL873530           29595475 406 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25559761 0 - 121039945 C
e saiBol1.JH378276            2792323 1057 +   3282555 I

a score=3974.000000
s hg38.chr15_KI270850v1_alt    114959 3 +    430880 aac
s panTro5.chr15              17352054 3 -  83230942 aAC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        38068 3 -    378907 aaC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25559761 3 - 121039945 AAT
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20384610 3 -  24206276 AAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       209140 3 -    383355 aac
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3809262 3 -   4111199 AAA
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3023787 41 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749236 41 +   1024465 I
e otoGar3.GL873530           29595475 406 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2792323 1057 +   3282555 I

a score=314713.000000
s hg38.chr15_KI270850v1_alt    114962 137 +    430880 aaGTTGTATTGATGGAGGACATCATTAACAGTATATCTCTTCAATAATGGTTTATTTTACTATTCTCATTCTTCTCATTCCTCTCTTACTGTGTTCCAAATCTCTTTACAGGCTAAA--AGAAACTCTTCAGAATTACT
s panTro5.chr15              17352057 128 -  83230942 AATTTGTATTGAAGGAGGACATCATTAACAGTATATCTATTCAATAATGATTTATGTTACTA---------TTCTCATTCCTCTCTTACAGTGTCCCAAATCTCTTTACAGGTTAAA--AGAAACTTTTCAGAATTAAT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        38071 137 -    378907 AAGTTGTGTTGATGGAGGACATCATTAACAGTATATCTCTTCAATAATGGTTTATTTTACTATTCTCATTCTTCTCATTCCTCTCTTACTGTGTTCCAAATCTCTTTACAGGCTAAA--ATAAACTCTTCAGAATTACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25559764 129 - 121039945 AAGTTGTATTGATGAAGGACATCATTAATAGTATACCTGGTCAATAATGGGTTAT-TTACTA---------TTCTCATTCCTCTCTTACTGTGCCCCAAATCTCTTTACAGGCTAAATGAGAAACTCTCCAGAATTAAT
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20384613 121 -  24206276 AAGTTGTATTGAAAGAGGACATCATTAACAGCATATCTCTTCA---------------ACTATTTTCATTCTTCTCATTCCTCTCTTACAGTGTCCCAAATATCTTTGCACGCTAAA--ATAAACTCTT-AGAATTAAT
i chlSab2.chr29             C 0 I 1
s manLeu1.NW_012099388v1       209143 134 -    383355 aaGTTGTATTGA---AGGACATCAGTAACAGTGTATCTCTTCAATAATGGTTTATTTTACTATTCTCATTCTTTTCATTCCTCTCTTACAGTGTCCCAAATCTCTTTATAGGCTAAA--AGAAACTCTTCAGAATTAAT
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3809265 137 -   4111199 AAGTTGTATTGAAGGAGAACATCATTAACAGTATATCTCTTCAATAATGATTTATTTTACTATTATCATTCTTCTCATTCCTCTCTTACTGTGTTCCAAATCTCTTTACAGGCTAAA--AGAAAGTCTTCAGAATTAAT
i colAng1.NW_012116021v1    C 0 C 0
s cebCap1.NW_016107979v1       749277 134 +   1024465 AAGCTGTATTGAAGGAGGATATCATTAATAGCATACCTAGTCAATAATGGGTTATCTTACTATTCTCATTCCTCTAA-----CTCTTACTGTGTCCCAAATCTCTTTACAGGCTAAAAGACAAACTCTTCAGAATTAAT
i cebCap1.NW_016107979v1    I 41 C 0
s aotNan1.NW_018511953v1      3023828 134 +   3745603 AAGCTGTATTGAAGGAGGACATCATTAATAGTATACCTAGTCAATAATGGGTTATCTTACTATTCTCATTCCTCTAA-----CTCTTACTGTGTCCCAAATCTCTTTACAGGCTATAAGAGAAACTCTTTAGAATTAAT
i aotNan1.NW_018511953v1    I 41 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530           29595475 406 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2792323 1057 +   3282555 I

a score=9876.000000
s hg38.chr15_KI270850v1_alt    115099 9 +    430880 CCTAttctt
s panTro5.chr15              17352185 9 -  83230942 CCTAttctt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        38208 9 -    378907 CCTAttctt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25559893 9 - 121039945 CCTGTTCTT
i nomLeu3.chr6              C 0 I 2
s chlSab2.chr29              20384735 9 -  24206276 CCttttttt
i chlSab2.chr29             I 1 C 0
s colAng1.NW_012116021v1      3809402 9 -   4111199 CCTACTCtt
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3023962 0 +   3745603 C
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749411 0 +   1024465 C
e otoGar3.GL873530           29595475 406 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012099388v1       209277 0 -    383355 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2792323 1057 +   3282555 I

a score=2375.000000
s hg38.chr15_KI270850v1_alt    115108 12 +    430880 tttt-------ttcttttt
s panTro5.chr15              17352194 12 -  83230942 tttt-------tttttttt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        38217 19 -    378907 ttctttttttgtttttttt
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20384744  7 -  24206276 ------------ttttttt
i chlSab2.chr29             C 0 I 149
s colAng1.NW_012116021v1      3809411  7 -   4111199 ------------ttttttc
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3023962  0 +   3745603 C
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749411  0 +   1024465 C
e otoGar3.GL873530           29595475 406 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012099388v1       209277  0 -    383355 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25559902  2 - 121039945 I
e saiBol1.JH378276            2792323 1057 +   3282555 I

a score=14895.000000
s hg38.chr15_KI270850v1_alt    115120 35 +    430880 tgagaccgagtttcgctcttgttgcccaggctgga
s panTro5.chr15              17352206 34 -  83230942 tgaaacggagtcttgttc-tgtcacccaggctgga
i panTro5.chr15             C 0 I 117
s gorGor5.CYUI01015946v1        38236 35 -    378907 tgagaccgagtttcgctcttgttgcccaggctgga
i gorGor5.CYUI01015946v1    C 0 C 0
s colAng1.NW_012116021v1      3809418 33 -   4111199 --agaccgagtttcgctcttgttgcccaggctgga
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3023962  0 +   3745603 C
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749411  0 +   1024465 C
e otoGar3.GL873530           29595475 406 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012099388v1       209277  0 -    383355 C
e chlSab2.chr29              20384751 149 -  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25559902  2 - 121039945 I
e saiBol1.JH378276            2792323 1057 +   3282555 I

a score=29080.000000
s hg38.chr15_KI270850v1_alt    115155 117 +    430880 gcgcagtggcacgatctcagctcatcacaacctccacctcccaggttcaagcaattctcctgcctcagccttcctgagtagctgggattacaggcatgtgccatcatgccccactaa
s gorGor5.CYUI01015946v1        38271 117 -    378907 gtgcagtggcacgatctcagctcatcacaacttccacctcccgggttcaagcaattctcctgcctcagccttcctgagtagctgggattacaggcatgtgccatcaggccccactaa
i gorGor5.CYUI01015946v1    C 0 C 0
s colAng1.NW_012116021v1      3809451 117 -   4111199 gtgcagtggcacgatctcagctaaccacaacctgcacctcccaggttcaagcaattctcctgcttcagccttcctgagtagctaggattacacacatgtgccaccacgcccggctaa
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3023962   0 +   3745603 C
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749411   0 +   1024465 C
e otoGar3.GL873530           29595475 406 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012099388v1       209277   0 -    383355 C
e chlSab2.chr29              20384751 149 -  24206276 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25559902   2 - 121039945 I
e saiBol1.JH378276            2792323 1057 +   3282555 I
e panTro5.chr15              17352240 117 -  83230942 I

a score=9190.000000
s hg38.chr15_KI270850v1_alt    115272 10 +    430880 ttttgtattt
s panTro5.chr15              17352357 10 -  83230942 ttttgtattt
i panTro5.chr15             I 117 C 0
s gorGor5.CYUI01015946v1        38388 10 -    378907 ttttgtattt
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20384900 10 -  24206276 ttttgtattt
i chlSab2.chr29             I 149 C 0
s colAng1.NW_012116021v1      3809568 10 -   4111199 ttttgtattt
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3023962  0 +   3745603 C
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749411  0 +   1024465 C
e otoGar3.GL873530           29595475 406 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012099388v1       209277  0 -    383355 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25559902  2 - 121039945 I
e saiBol1.JH378276            2792323 1057 +   3282555 I

a score=83306.000000
s hg38.chr15_KI270850v1_alt    115282 125 +    430880 ttagtagagacg-gggtttctctatgttggtcaggctggtctcgaacccctaatctcagatgatccacccacctcggcctcccaaagtgttgggattacaggcatgagccactgcgcccag--ccAAC
s panTro5.chr15              17352367 124 -  83230942 ttagtagagatg-gggtttcaccatattagccagggtggtctcgatctcctgatctc--gtgaaccgcctgcctcggcctcccaaagtgctgggattacaggtgtgagccaccatgcctgg-ccCAAT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        38398 125 -    378907 ttagtagagacg-gggtttctccatgttggtcaggctggtctcgaacccctaatctcagatgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcccag--ccAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20384910 124 -  24206276 ttagtagagatg-gggtttcaccgtgttagccaaggtggtcttgatctcctgatctc--gtgatccgcctgccttggcctcccaaagtgctgggattacaggtgtgaaccaccacgcctgg-ccCAAT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3809578 125 -   4111199 ttagtagagaca-gggtttctccatgttggtcaggctggtctagaactcccaatctcagacgatccgcccacctcggcctcccaaagtgttgggattacaggcgtgagccaccgcgcccag--ccAAT
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530           29595881  98 +  36342412 TTAGTAGATCTGTTTATTTTTCTATTCTCATT-------TCTGTAACCCTTACT-----ATGTCCCAAATCCCTTTGCAGGCTAAAAGGTAA------------------ACTGTCTTCAGAATTAAT
i otoGar3.GL873530          I 406 C 0
e aotNan1.NW_018511953v1      3023962   0 +   3745603 C
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749411   0 +   1024465 C
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012099388v1       209277   0 -    383355 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25559902   2 - 121039945 I
e saiBol1.JH378276            2792323 1057 +   3282555 I

a score=40989.000000
s hg38.chr15_KI270850v1_alt    115407 15 +    430880 CCTATTCTTAAAGAA
s panTro5.chr15              17352491 15 -  83230942 CCTATTCTTAAAGAA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        38523 15 -    378907 TCTGTTCTTAAAGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20385034 15 -  24206276 CCTATTCTTAAAGAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       209277 15 -    383355 CCTATTCTTAAAGAA
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3809703 15 -   4111199 CCTACTCTTAAAGAA
i colAng1.NW_012116021v1    C 0 C 0
s cebCap1.NW_016107979v1       749411 15 +   1024465 CCTGTTCTTAAAGAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3023962 15 +   3745603 CCTGTTCTTAAAGAA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530           29595979 15 +  36342412 ACTATTTCTCAAGAA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25559902  2 - 121039945 I
e saiBol1.JH378276            2792323 1057 +   3282555 I

a score=688132.000000
s hg38.chr15_KI270850v1_alt    115422 259 +    430880 CACCAGTTCCTCAGTATTGCATTTTCTTCTATAAATTCTTCAGCATACACTGAGAATACACCATATGGACTATTTTTACACTTTTAAT--------TTTC-GTTT-TTTTTTA---------CTTTTGGCTAAGGAAATTTCAATTAGATTTAGGACTTCATTCTGTTAGGTTAGTATTT-TCTAGTAAACTTCAGCATAAGCAAAATAAAATACGTGTTGTTGCTCTGGACTGAAACCCCTCAAAACCATATTTTAAAAATTAC--AAAAAAAAATTAAC
s panTro5.chr15              17352506 267 -  83230942 TACCACTTACTGAGTACTGCATTTTCTTCTCCAGATTCTTCAGCATACATTGGGAATACACCATATGGACCATTTTTACATTTTTAGTTATGGGGGTTTT-GTTTGTTTGTTT---------GTTTTGGCTAAAGAAACTGCAACTAGATTTAGGACCTCATTCTATTAGGTTAGTATTTGTCTAGTAAACTTCAGCATAAGCAAAATAAAATACGTGTTGTTGCTCTGGACTGAAACCCCTCAAAACCAAATTTTAAAAATTAC----AAAAACATTAAC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        38538 259 -    378907 CACCACTTACTGAGTATTGCATTTTCTTCTATAAATTCTTCAGCATACACTGAGAATACACCATATGGACTATTTTTACGCTTTTAAT--------TTTC-GTT--TTTTTTT---------CTTTTGGCTAAGGAAATTGCAATTAGATTTAGGACTTCATTCTGTTAGGTTAGTATTTGTCTAGTAAACTTCAGCATAAGCAAAATAAAATACGTGTTGTTGCTCTGGACTGAAACCCCTCAAAACCATATTTTAAAAATTAC--AAAAAAAAATTAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25559904 257 - 121039945 CACCACTTATTGAGTACTGCATTTTCTTCTTCAAATTCTTCAGCACACATTGGGAATACACCATCTGGACCATTTTTACTGTTTTAGT--------TTTT-AGGT-TTATTTT---------CCTTAGGCTAACGAAATTGCAACTACACTTAGGATCTCAT--TATTAGGTTAGTATTTGTCTAGTAAACTTCAGCATAAGCCAAGAAACATACACGTCATCACTCTGGACTGAAAGCCCTCAAAACCATATTAAGAAAATTAC---AAAAACAATTAAC
i nomLeu3.chr6              I 2 C 0
s chlSab2.chr29              20385049 267 -  24206276 CACCACTTTTGGACTGTTGCATTTTCTTCTTCAAATTCTTCAGCATACATTGGGAATACACCACATGAACCATTTCTACATTtttagt--------tttg-ggtt-ttttttgttttttgtttttttggCTAAAGAAACTGCAACTAGATTTAGGACCTCAATCTATTAGGCTAGTATTTGTCTAGTAAACTTGAGCATAAGCAAAATAAAATACATGTTGTTGCTCTGGACTGAAACCCGTCAAAACCATATTTTAGAAACTAC----AAAAACATTAAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       209292 270 -    383355 CACCAGTTACTGAGTATTGCATTTTCTTCTTCAAATTCTTCAGCATACATTGAGAATACACCATATGGACCAtttttacgttttcagt--------ttggttttt-tttttttttttttttttttttGGCTAAAGAAACTGCAACTAGATTTAGGACCTGCTTCTATTAGGTTAGTATTTGTCTAGTAAACTTCAACATAAGCAAAATAAAATATGTGTTGTTGCTCTGGACTGAAACCTCTCAAAACCGTATTTTTAAAATTAC--AAAAAAAAATTAAC
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3809718 261 -   4111199 CACCACTTACTGAGTATTGCATTTTCTTCTATAAATACTTCAGCATACACTGAGAATACACCATATGGACCATTTTTACGCTTTTGAT--------TTTG-GGGC-TTTTTTA----------TTTTGGCTAACGAAATTGCAGTTAGATTTAGGACCTCATTCTGTTAGGTTAGTATTTGTCTAGTAAACTTCAGCATAAGCAAAATAAAATACGTCTTGTTGCTCTGGACTGAAACCCCTCAAAACCATATTTTAAAAATTACAAAAAAAAAAATTAAC
i colAng1.NW_012116021v1    C 0 C 0
s cebCap1.NW_016107979v1       749426 256 +   1024465 CACCACTTATTGAGTGTTGCCTTTTCTTCTTCAAATCCTTCA-CACGTATTGGGAATACACCATCTGGACCATTTTTACTGTTTTAGT--------TTTTAGGTT-TCTTTTT---------CCTTAGGCTAAAGAAACCGCAATTAGATTTAGGACCTCATTCTATTAGCTTAATATTTGTCTAGTAAACTTCAGCAGAAGCCAAGAAACATACATGTTGTT-CTCTGGACTGAAATCCCTCAAAACCATATTTAAAAAATTAC---AAAAACAATTA--
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3023977 257 +   3745603 CACCACTTATTGAGTGTTGCATTTTCTTCTTCAAATTCTCCA-CACGCATTGGGAATACACCATCTGGACCATTTTTACTGTTTTAGT--------TTTTAGGTT-TCTTTTT---------CCTTAGGCTAAAGAAACTGCAACTAGATTTAGGACCTCATTCTATTAGCTTAATATTTGTCTAGTAAACTTCAGCAGAAGCCAAGAAACACACATGCTCTTGCTCTGAACTGAAATCCCTCAAAACCATATTTTAAAAATTAC---AAAAACAATTA--
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530           29595994 241 +  36342412 AACCATTTATTGAATATTACATTTTCCTCTTC--ACTCTTCAACCTACTTTGGGAACATATCATCTAGATCATTTTTACTGTTTTAGT--------TTTGTATTT-TCTTTAG---------CCTTAAAAGAAAAAAA---AAACTAGATTTAGGATTTCATTCTA-TAGATTAGTG-TTGTCTAATAAACTTCTGCATAAGCAAAATAAAATATACATTGTTGCTATGGCCTGAAA-----------CATATTAAGAGAACTGA----AGAAACATTAAC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2792323 1057 +   3282555 I

a score=496178.000000
s hg38.chr15_KI270850v1_alt    115681 146 +    430880 TGAAAT----------------CAAGTTTTTAAAAACCTTGTAGATGAAAAGATATGATATCTAGTACGTCTAAGTACCTATTTc-aatggttcccaaagtgcggccctcagacccccaagtccaaactattttg--------------------------------------------acaggaatactaacatggtgacatttgc
s panTro5.chr15              17352773 146 -  83230942 TGAAAT----------------AAAGTTTTAAAAAATCTTGTAGATGAAAAGATATGATATATAATAGGTTTAAGTACCTATTTC-AACGGTTCCCAAAGTGTGGCCCTCAGACCCCCAGGTCCAAACTGTTTTG--------------------------------------------ACAGGAATACTAACAtggtgacatttgc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        38797 146 -    378907 TGAAAT----------------CAAGTTTTTAAAAACCTTGTAGATGAAAAGATATGATATCTAGTACATCTAAGTACCTATTTC-AATGGTTCCCAAAGTGCAGCCCTCAGACCCCCaagtccaaactattttg--------------------------------------------acaggaatactaacatggtgacatttgc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25560161 141 - 121039945 TGAAAT----------------CATGTTTTT---AATCTTGTAGATGAAAAGATATGATACACTGTAGATCTAAGTACCTATTTc-aatggttcccaaagtggggccctcagacccccaggtccaaactattttt--------------------------------------------acaagaaaactaacatgttgaca--tgc
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20385316 146 -  24206276 TGAAAT----------------CAAGTTTTTAAAAATCTTGTAGATGAAAAGATATGACATATCGTAGGTTTAAGCACCTATTTC-AatggttcccaaagtgtggccctcagaccccCAGgtccaaactattttg--------------------------------------------acaggaatactaacatggtgacatttgc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       209562 146 -    383355 TGAAAT----------------CAAGTTTTTAAAAACTTTGTAGATGAAAAGATATGATACATAGTACATTTAAGTACCTATTTC-AATGGTTCCCAAAGTGCGGCCCTCAAACCCTCaggtccaaactattttc--------------------------------------------acaggaatactaacatggtgacatttgc
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3809979 146 -   4111199 TGAAAT----------------CAAGTTTTTAAAAGCTTTGAAGATGAAAAGATACGATATATAGTAGGTCTAAGTACCTATTTc-agtggttcccaaagtgccgccctcagacccccaggtccaaactattgtg--------------------------------------------acaggaataataacatggtgacattagc
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2793380 143 +   3282555 TGAAAC----------------TATTTTTTT---AATCCTGTAGATGCACAGATGTGATATACAGCAGGTCTAAGTACCTATTTT-AATGGTTCCCAAAGTGGGGCCTTCAGATCCCCaggtccaaactattttt--------------------------------------------acaaggatactaacaagatgacatacgc
i saiBol1.JH378276          I 1057 C 0
s cebCap1.NW_016107979v1       749682 141 +   1024465 TGAAAC----------------TA-TTTTTT---AATCCTGTAGATGCAAAGATATGATACATAGCAGGTCTAAGTATCTATTTT-AATGGTTCCCAAAGTGGGGCCCTCAG-cccccaggtccaaactattttt--------------------------------------------acaagaatactaacaagatgacatatgc
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3024234 143 +   3745603 TGAAAC----------------TATTTTTTT---AATCCTGTAGATGCAAAGATATGATATATAGTAGGTCTAAGTACCTATTTT-AATggttcccaaagtgggaccctcagacccccaggtccaaactattttt--------------------------------------------acaagaatactaacaagttgacatatga
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530           29596235 204 +  36342412 TGAATTATGTTACTACCTCAGACATGTTTTT--CAATTCTGAACATGAGAAAATATGATATATAATAGGTCTGAGTACCTTTTTCAAATGGTTCCCGAAG-GGGGCCCTCAACCCTCTAAGTCCAAACTGCATTTCttgatcccacaatcgcattactaggtatttacccagaagaaaaaaaataattttatcacaaggacatctgc
i otoGar3.GL873530          C 0 I 500
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=259084.000000
s hg38.chr15_KI270850v1_alt    115827 71 +    430880 tgtaagtgtgcaaatacaatggtgggtaaaaatgctggtactttagcacaaacaaaagcagtaacaccaaa
s panTro5.chr15              17352919 71 -  83230942 tgtaagggtgcagatgcaatggtgggtaaaaatgctggtactttagcacaaataaaggcagtaacaccaaa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        38943 70 -    378907 tgt-agtgtgcaaatacaatggtgggtaaaaatgctggtactttagcacaaacaaaggcagtaacaccaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25560302 71 - 121039945 tgtaagggtgcagatataatggtgggtaaaaatgctggtactttagcacaaataaaggtggtaacaccaaa
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20385462 71 -  24206276 tgtaagggtacagatacaatggtgggttaaaatgctggtactttagcacaaataaaggcagtaacaccaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       209708 71 -    383355 tgtaagtgtgtaaatacaatggtgggtaaaaatgctggtactttagcacaaacaaaggcagtaacaccaaa
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3810125 71 -   4111199 tgtaagcatgcaaatacaatggtgggtaaaaatactggtactttagcacaaacaaaagcagtaacaccaaa
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2793523 71 +   3282555 tgcaagggtgcagatataatggtgggtaaaaatgctggttctttagcacaaataaaggcggtaacaccaaa
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       749823 71 +   1024465 tgtaagggtgcagatataatggtgggtaaaaatgctggttctttagcacaaataaaggcagtaacaccaaa
i cebCap1.NW_016107979v1    C 0 I 1438
s aotNan1.NW_018511953v1      3024377 71 +   3745603 tgaaagggtgcagataaaatggtgggtaaaaatgctggttctttagcaaaaataaaggcagtaacaccaaa
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530           29596439 500 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=107908.000000
s hg38.chr15_KI270850v1_alt    115898 43 +    430880 ctactagtagtcatggtattcttcattatgcacag--------gaaaggtt
s panTro5.chr15              17352990 42 -  83230942 ctactagtagtcatggtatgact-actatgcacag--------gaaaggtt
i panTro5.chr15             C 0 I 8
s gorGor5.CYUI01015946v1        39013 43 -    378907 gtactagtagtcatggtattcttcactatgcacag--------gaaaggtt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25560373 43 - 121039945 ctactagtagtcatggtattcttcactatgcacag--------gaaaggct
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20385533 50 -  24206276 ctactagtagtcatggtatgact-actatgcacaggaaaggttgaaaggtt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       209779 43 -    383355 ctactagtagacatggtattcttccctatgcacgg--------gaaaggtt
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3810196 43 -   4111199 ctactagtagtcatggtattcttcaccatgcacag--------gaaatgtt
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2793594 43 +   3282555 ctactagtattcatcgtattcttcactatgcacag--------gaaaggtt
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1      3024448 43 +   3745603 ctactagtattcaaagtattcttcactatgcacag--------gaaaggtt
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749894 1438 +   1024465 I
e otoGar3.GL873530           29596439 500 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=32809.000000
s hg38.chr15_KI270850v1_alt    115941 13 +    430880 taaaaaggaaggg
s panTro5.chr15              17353040 13 -  83230942 taaaaaggaaggg
i panTro5.chr15             I 8 C 0
s gorGor5.CYUI01015946v1        39056 13 -    378907 taaaaaggaaggg
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20385583 13 -  24206276 taaaaaggaacgg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       209822 13 -    383355 taaaaaggaaggg
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3810239 13 -   4111199 taaaaaggaaggg
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2793637 13 +   3282555 taaaaaggaaggg
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1      3024491 13 +   3745603 taaaaaggaaggg
i aotNan1.NW_018511953v1    C 0 I 2969
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749894 1438 +   1024465 I
e otoGar3.GL873530           29596439 500 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25560416  0 - 121039945 C

a score=157520.000000
s hg38.chr15_KI270850v1_alt    115954 118 +    430880 -------------------------------------tgggtgggacatggtggcctacaccagtaatcccagtgcttcgggaggctgaggtagacggatcacttaaggtcaggagtttgagacgagcttggccaacatggtgaaaccccatctc
s panTro5.chr15              17353053 118 -  83230942 -------------------------------------agggccgggcacagtgactgatgcctgtaatcccagcattttgggaggccaaggtgggcagatcacctgaggtcaacagtttgagacgagcctggccaacatggtgaaatcctatctc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        39069 118 -    378907 -------------------------------------cgggtggggcatggtggcctacgcctgtaatcccagtgctttgggaggctgaggtagacggatcacctaaggtcaggagtttgagaccagcttggccaacatggtgaaaccccatctc
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20385596 118 -  24206276 -------------------------------------tgggccgggcacagtgactcacacctgtaatcccagcactttgggaggccaagacgggcagatcacctgaggtcaagagtttgagaccagcctgaccaacatggtgaaaccccatctc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       209835 118 -    383355 -------------------------------------tgggctgggcatggtggctcacacctataattccagcagtttggaaggccaaggcggtcatatcacctgaggtcaagagtttgagaccagcctggccaacatggcgaaaccccatctc
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3810252 118 -   4111199 -------------------------------------caggcggggcagggtggctcacgcctgtaatcccagtgctttgggaggctgaggcagacagattacttgaggtcaggagtttgagaccagcttggccaacgtggtgaaaccccatctc
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2793650 154 +   3282555 caacaaaaggtcagtttcatttaagaatgtctacaataagactgagaatggtgacttgtgcctatagtcccagcactttgggaggccaaggcagaaggaccacttgagcctaggaggtcaagaccaggctgg-caacatggtaaaaccccatctc
i saiBol1.JH378276          C 0 C 0
e aotNan1.NW_018511953v1      3024504 2969 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749894 1438 +   1024465 I
e otoGar3.GL873530           29596439 500 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25560416   0 - 121039945 C

a score=2225.000000
s hg38.chr15_KI270850v1_alt    116072 4 +    430880 tact--
s panTro5.chr15              17353171 4 -  83230942 tact--
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        39187 4 -    378907 tact--
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20385714 4 -  24206276 tact--
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3810370 4 -   4111199 tact--
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2793804 6 +   3282555 tacaat
i saiBol1.JH378276          C 0 C 0
e aotNan1.NW_018511953v1      3024504 2969 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749894 1438 +   1024465 I
e otoGar3.GL873530           29596439 500 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012099388v1       209953 0 -    383355 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25560416 0 - 121039945 C

a score=14872.000000
s hg38.chr15_KI270850v1_alt    116076 19 +    430880 aaaaatacaaaaattagct
s panTro5.chr15              17353175 19 -  83230942 aaaaatacaaaacttagct
i panTro5.chr15             C 0 N 0
s gorGor5.CYUI01015946v1        39191 19 -    378907 aaaaatacaaaaattagct
i gorGor5.CYUI01015946v1    C 0 C 0
s colAng1.NW_012116021v1      3810374 19 -   4111199 aaaaatataaaaattagct
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2793810 19 +   3282555 aaacatacaaaaattagtt
i saiBol1.JH378276          C 0 C 0
e aotNan1.NW_018511953v1      3024504 2969 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749894 1438 +   1024465 I
e otoGar3.GL873530           29596439 500 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012099388v1       209953  0 -    383355 C
e chlSab2.chr29              20385718  0 -  24206276 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25560416  0 - 121039945 C

a score=61184.000000
s hg38.chr15_KI270850v1_alt    116095 155 +    430880 cggtgtggtgg-tgcatgcctgtattaccaaatacttaggaggctgaggcaggagaatcacttgaacctgggaggcagaggttgccttgagctgaaattgcacctatgtaactccagactgggcaacagagcaaaactccatctccaaaaataaaa
s gorGor5.CYUI01015946v1        39210 155 -    378907 cggtgtggtgg-tgcatgcctgtattcccaaatatttaggaggctgaggcaggagaatcacttgaacctgggaggcagaggttgccttgagctgaaattgcacctatgtaactccagactgggcaacagagcaaaactccgtctccaaaaataaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s colAng1.NW_012116021v1      3810393 155 -   4111199 cggtgtggtgg-tgcgtgcctgtagtcccagctacttgggaggctgaggcaggagaatcacttgaacctgggaggcagaggttgccttgacctgaaatcgtgcctatgtaactctagactgggcaacagagcaaaactccatctccaaaaagaaaa
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2793829 154 +   3282555 gggtgtagtggttgcatgcctgtagtcccagctacttgggaggctgaggcaggaggactgattgagccaagaagcttgaagctgcagtgagctgtgatcatg-ctattgcactctagcctgggtgacagaacaaggccctgtct-caaaaataaaa
i saiBol1.JH378276          C 0 I 2613
e aotNan1.NW_018511953v1      3024504 2969 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749894 1438 +   1024465 I
e otoGar3.GL873530           29596439 500 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012099388v1       209953   0 -    383355 C
e chlSab2.chr29              20385718   0 -  24206276 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25560416   0 - 121039945 C

a score=273.000000
s hg38.chr15_KI270850v1_alt    116250 1 +    430880 a
s gorGor5.CYUI01015946v1        39365 1 -    378907 a
i gorGor5.CYUI01015946v1    C 0 C 0
s colAng1.NW_012116021v1      3810548 1 -   4111199 a
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3024504 2969 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749894 1438 +   1024465 I
e otoGar3.GL873530           29596439 500 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012099388v1       209953 0 -    383355 C
e chlSab2.chr29              20385718 0 -  24206276 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25560416 0 - 121039945 C
e saiBol1.JH378276            2793983 2613 +   3282555 I

a score=55940.000000
s hg38.chr15_KI270850v1_alt    116251 114 +    430880 taaaaaggaagggcaacaaaaggtcagtttcatttaagaatgtctatgataagtttgggaattttggctcatgtctgtaattccagcactttggaaggcccaggcagggggatc
s gorGor5.CYUI01015946v1        39366 114 -    378907 taaaaaggaagggcaacaaaaggtcagtttcatttaagaatgtctatgataaggttgggaattttggctcatgtctataattccagcactttggaaggcccaggcagggggatc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25560416 114 - 121039945 taaaaaggaagggcaacaaaatgtcagtttcatttaagaatgtctacgataaggctgggaatggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggaggatc
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012116021v1      3810549 114 -   4111199 gagaaaggaagagcaataaaaggccagtttcatttaagaacgtctatgataaggctgggaattttggctcatgtctataattccagcattttggaaggcccaggcagggggatc
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3024504 2969 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749894 1438 +   1024465 I
e otoGar3.GL873530           29596439 500 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012099388v1       209953   0 -    383355 C
e chlSab2.chr29              20385718   0 -  24206276 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2793983 2613 +   3282555 I

a score=23165.000000
s hg38.chr15_KI270850v1_alt    116365 54 +    430880 -ccttgagcccgggagttcaagacctgcctgggcaacctggtgaaac--ctcatctt
s gorGor5.CYUI01015946v1        39480 54 -    378907 -acttgagcccgggagttcaagacctgcatgggcaacctggtgaaac--ctcatctc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25560530 54 - 121039945 -acttgagcccaggagttcaagaccagcctggccaacagggtgaaac--cccatctc
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012116021v1      3810663 54 -   4111199 -acttgagcccaggaggtcaagacctgcctaggcagcctggtgaaac--cccatctc
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530           29596939 51 +  36342412 cactgaggctggcaggttcgaacccagcccagg---ccagctaaaacgaacaat---
i otoGar3.GL873530          I 500 C 0
e aotNan1.NW_018511953v1      3024504 2969 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749894 1438 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e manLeu1.NW_012099388v1       209953  0 -    383355 C
e chlSab2.chr29              20385718  0 -  24206276 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2793983 2613 +   3282555 I

a score=1621.000000
s hg38.chr15_KI270850v1_alt    116419 4 +    430880 tac---a
s gorGor5.CYUI01015946v1        39534 4 -    378907 tac---a
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25560584 7 - 121039945 tacaaaa
i nomLeu3.chr6              C 0 C 0
s manLeu1.NW_012099388v1       209953 4 -    383355 tac---a
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3810717 4 -   4111199 cac---a
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530           29596990 4 +  36342412 gac---a
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3024504 2969 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749894 1438 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e chlSab2.chr29              20385718 0 -  24206276 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2793983 2613 +   3282555 I

a score=230358.000000
s hg38.chr15_KI270850v1_alt    116423 168 +    430880 aaaaatac----aaaaattagctgaacacagtggctgcatgcctgtagtcccagcgtcttggaaggctgaggcaggaggattgactgaacccagaaagttgaggctgcagtgagctgtgatcacgctactgcactccagcctgggtgacagaacaaggccctgtctcgaaaa
s gorGor5.CYUI01015946v1        39538 168 -    378907 aaaaatac----aaaaattagctgaacacagtggctgcatgcctgtagtcccagcgtcttggaaggctgaggcaggaggattgactgaacccagaaagttgaggctgcagtgagctgtgatcacgctactgcactccagcctcggtgacagaacaaggccctgtctcgaaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25560591 168 - 121039945 aaaaatac----aaaaattagctaagcatggtggttgcatgcctgtagtcccagctacctgggaggctgaggcagacggattgattgagcccagagggtcgagtcaccagtgagctgtgatcacgctactgcactccagcctgggtgacagaacaaggccctgtctcaaaaa
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20385718 168 -  24206276 aaaaatac----aaaaattaggtggacattgtggttgcatgcttctagtcccagctacttggcaggctgaggcaggaggattgactgagcccagaaggttgaggctacagtgagctgtgatcatgctactgcacttcagcctgggtgacagaacaaggccctgtctcaaaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       209957 164 -    383355 aaaaatac----aaaaattagctggacatggtggttgtatgcctgtagtccaagttaattggaaagctgaggcaggaggat----tgagcctagaaggttgaggctacagtgagctgtgatcatgctactgtacttcagcctgtgtgacagaacaaggccctatctcaaaaa
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3810721 168 -   4111199 aaaaatac----aaaaattagctgaacacagtggctgcaggcctgtagtcccagatacttggaaggctgaggcagaaggattgactgagcccagaaagttgaggctgcagtgagctgtgatcacactactgcacttcagcctggatgacagaacaaggccctgtctcaaaaa
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530           29596994 162 +  36342412 ---actgcaacaaaaaaatagctgggtgttgtggcag-gtacctgtagtcccacctacttgggaggctgtggcaagagtatcacttaagcccaagagtttgaggttgctgtgaactgtg---acaccacagcactctaccaagggcaacaa---gagactctgtctcaaaaa
i otoGar3.GL873530          C 0 I 157
e aotNan1.NW_018511953v1      3024504 2969 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749894 1438 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2793983 2613 +   3282555 I

a score=1130224.000000
s hg38.chr15_KI270850v1_alt    116591 1055 +    430880 ttaaaaaaaaaaaaaaagaa--------------------------tgtctatgatgaagcagtgaatat---tttactatatctaaatcattgaatatatctttttaatatttcaagtgatgaaatgggaagtatacatgagcattcctacaggctgcctgaggaaaaacccttgagtgactaagtcttgaagtgaattaaccactttaatggaataccatttttacttgaaaggctgactgacaaaaaat-gttattttaactcgcatttctggcagatatttt-ctcaaaa-------catgagattctgtcatttcaagg-aaaacaacagacaggctataataaaattcaataacaaaattac---taataaaattcaagcttttgaacaaaaaattagaattttagaaaacttatgcccaccatcg------------ctttccaaaagtattctgatgagattgatggtggtactgatgaatgtattttgatactgtacaa-----atgtatcaacatgtagaagatcttagtgaaccactgttttat-aagtgaccaatgcacgatgttgtaatatcatgcaagggtggaag----atccaaagttcaagaaaaaccaagatttgatggagtatcaaaaaagaagcctaggcaacatggcaaaaccctgtctctac--aaaaaatacaaaaagttagccaagtgtggtggtacacacctgtagtcccagctactctggaggctgaggtgggaggatcaccttagtccctggagactgaggctgcagtgagctgtgatcacaccactaccttccagcctgggcaacagggcaagacctcatctcaaaaa----------a-atata----tatatccacaatgatctaaaatggt-------------------------------tatctgtatgagattggcctttgttcaca-ttttttcaagaaaatatcacacaataaattgaatgcagaagcaaactgacatatcaatttgctaatgacatatcaaacatcatgcaaatgacatatcaaacatcaaaataatttgcaaaagatgtaagactgtactac----------------tttgggtttagaaatttt-----cttttcataaaagcatttataaca--atatgtggtgag-cttttaaac----aata
s gorGor5.CYUI01015946v1        39706 1055 -    378907 ttaaaaaaaaaaa----gaa--------------------------tgtctatgatgaagcagtgaatat---tttactatatctaaatccttgaatagatctttttaatatttcaagtgatgaaatgggaagtatacatgagcattcctacaggctgcctgagaaaaaacccttgagtgactaagtcatgaagtgaattaaccactttaatggaataccatttttacttgaaaggctgactgacaaaaaat-gttattttaactcgcatttctggcagatatttt-ctcaaaa--------atgagattctgtcatttcaagg-aaaacaacagacaggctataataaaattcaataacaaaattac---taataaaattcaagcttttgaacaaaaaattagaattttagaaaacttatgtccaccatcg------------ctttccaaaagtattctgatgagattgatggtggtattgatgaatgtattttgatactgtacaat-caaatgtatcaacatgtagaagatcttagtgaaccactattttat-aagtgaccaatgcacgatgttgtaatatcatgcaagggtggaag----atccaaagttcaagaaaaaccaagatttgatggaataTCAAAAAAGAagcctaggcaacatggcaaaaccctgtctctac--aaaaaatacaaaaagttagccaagtgtggtggtacacacctgtagtcccagctactctggaggctgaggtgggaggatcacctgagtccctggagactgaggctgcagtgagctgtgatcacaccactaccttccagcctgggcaacagggcaagacctcatctcaaaaa----------aTATATA----TATATCCACAATGGTCTAAAATGGT-------------------------------tatctgtatgagactggcctttgttcaca-ttttttcaagaaaatatcacacaataaattgaatgcagaagcaaactgacatatcaatttgctaatgacatgtcaaacatcatgcaaatgacatatcaaacatcaaaaaaatttgcaaaagatgtaagattgtactac----------------tttgggtttagaaatttt-----cttttcataaaagcatttataaca--atatgtggtgag-cttttaaag----aata
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25560759 1012 - 121039945 t-------aaaaa----gaa--------------------------tgtctatgatgaagcagtgaaaat---tttactacatctgaatccttgaatatgtctttttaatatttcaagtgatgaaacgggaagtatacatgagcattcctacagactgcctgagaaaaaacccttgtgtgactaagtcatgaagtgaattaaccacttaaatggaataccatttttacttgaaaggatgactgac----aat-gttatttcaacttgggtttttggcaggcattttcctcaaaa-------aatgagattctgtcatttcaaggaaaaaaaacagacaggccataataaaattcaataataaaactgctaataataaaatacaagtttttgaacaaaaaattagaatttttgaaaacttgtatccaccactg------------ttttccaagaatatcctgataacattgatggcaatactgatgaatgtattttgatactgtaaaat-cgaatgtattaacacttagaagatctcggtgaaccattattttct-aaatgaccaatgcatgatgttataatatcatgcaagggtaaaag----atccaaagttcaagaaagaccaagttttgatggagtatcaaaaaagaagcctaggcaacatggcaaaaccctgtctctacaaaaaaaatacaaaaaattagcc-agtaagatggcctacacctg------------------------------------------agtcccaggacactgagggtgcagtgaactgtgatcacaccactgcactccagcctgggcaacacagtgagcccccatctcaaaaa----------a-acaaaaaagaatatccacaattatctaaaatggccattaaaatattcagaatttttccaaccaggtatctgtatgaggttggattttgtttaca-ttatttcaagcaaatatcatacaacaaattaaatgcaaaa-------------------------------------------gcaaatgacagagcaaacatcaatgaaatttgcaaaaaatgtaagactgtgctactattcta-------tttcttggcttagaaaattt-----tgtttcataaaagcacat-ttata--atatgtgacgag-tttttaaagagttaatg
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20385886 1014 -  24206276 t-------aaaaa----gaa--------------------------tgtctatgatgaagcagtgaaaat---tttac---atcttaatccttgaatatatctttttaatattttatgtgatgaaatgggaagtacacatgagcattcgtacagactacctgagaaaaaacccttgggtaatcaagtcatgaagtgaattaaccactttaatggaatatcatttttacttcaaaggatgactgacaaaaaat-gttatttcagcttgggtttt--ggagacatttt-ctcaaaa-------aaggagattctgttatttcaagg-aaaacaacagagaggccataataaaattcaacaataaaattgctaataataaaactcaagcttttgaacaaaaaattagaattttagaaaacttatgtctaccattg------------ctttccaaaagtattctgatgagactgatggtgatattaatgaatgcattttgatactgtataat-caaatgtatcaacatatagaagatctcagtgaacgattatttttg-aagcgaccaatgcatgatgttataatatcatgcaagggtaaaaa----atccaaagttcaagaaaaatcaagttttgatggagtatcaaaaaaGAAGTCAAGGcaacatggcaaaaccctgtctctat--gaaaaatacaaaaaaatagctaggtgtggtagtacacacctgtagtcccaactactgtggaggctaaggtgggaggatcacctgagtccccagagactgaggctccagtgatccatgaccataccactgcattctagcctgggcaacagagcaagaccccatctcaaaaaaaagaaaaagaaaaaga----aataTCCACAATGATCTAAAATGGC-------------------------------TAtctgtatgacactggcctttgttcaaatttttttcaagcaaatatcacacaataaattgaatgcagac-------------------------------------------acaaatgacataccaaacaccaaagaaatttgcaaaagat-taagattgtactac----------------tttgggtttagaaatttt-----cttttcataaaagcatttataaca--atatttggtgaa-cctttaaag----aata
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       210121  982 -    383355 t-------aaaaa----gaa--------------------------tgtctatgatgaagcagtgaaaat---tttac---atcttaatccttgaatatatctttttaatatttcaagtgaggaaacgggaagtatacatgagcattcctacagactgcctgagaaaaaaccctcatgtgactaagtcatgaagtgaattaaccactttaatggaatatcatttttacttcaaaggatgactgacaaaaaat-gttatttcaacttgggtttt-gggagacatttt-ctcaaaa-------aatgagattctgtcatttcaaga-aaaacaacagacaggccataataaaattcaaaaataaaactggtaataataaaattcaaggttttgaccaaaaaattagaattttagaaaacttatatccaccatcg------------ctttccaaaagtattc---tgaggttgatggtgatattgatgaatgtattttgatactgtataat-caaatgtatcaacatatagaagatctcagtgaaccattattttca-aaatgaccagtgcatgatgttataatatcatgccagggtaaaaaaag-atccaaagttcaagaaaaaacaggttttgatagagtatcaaaaAAGAagccaagacaacatggcaaaaccctgtctc-----------tacaaaaaattagccaggtgtagtggtacacacctgtagtcccaactactctggaggctgaggtgggaggatcacctgagtccccggagactgaggctgcagtgagccgtgatcacaccactgcattccaggctgggcgacagggcaagaccccatctcgaaaa----------aaaaaga----aaTATCCACAATGATCTAAAATGGC-------------------------------TAGCTGTATGAGATTGGCCTTTGTTCACA-TTTTTTCAAGCAAATATCACACAACAAATTG-ATGCAGAC-------------------------------------------ACAAATGACATACCAAACATCAAAGAAATTTTCAAAAAA--------TATACTGC----------------TGTGGGCTTAGAAATTT-------TTTTCATAAAAGCATTTTTAAC-----ATACGGTGAG-CTTTTAAAG----AAta
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3810889  998 -   4111199 ttaaaaacaaaaa----aaa--------------------------tgtttatgatgaagcagtgaatat---tttac---atcttaatccttgaatatatcttcttaatatttcaaatgatgaaatgggaagcatacacgagcattcctacaggctgcctgagaaaaaacccttgagtgactaagtcatgaagtggattaaccactttaatggaaaaccatttttacttgaaaggatgactggcaaacaat-gttatttcaacttgagtttctggcagacatttt-ct-aaaa-------aatcagattctgtcatttcaagg-aa---aacagacaggccataataaaat----------------tgctaataaaattcaagcttttgaacaaaaaaatagaattttagaaaacttatacccaccatcg------------ctttccaaaagtattctgatgagattgatgttggtactgattaatgtattttgatactgtacaat-caattgtatcaacatgtagaagatctcagtgaaccattttttttataaatgaccaaggcctgatgttataatatcatgcaagggtgaaag----atccaaagttcaagaaaaaccaagcttcgatggagtatcaaaaaagaagcctaggcaacatggcaaaaccctgtctctac-aaaaaaatacaaaaagttagccaggtgtggtggtacacacctgtagtcccaactactctggaggctgaggtgggaggatcacccaagtccccggagactgaggctgcagtgagccatgatcacaccactgcattctagactgggcgacagggcaagactccatctcaaaaa-------tatatacata----tacatccacaatgatctaaaatggc-------------------------------tagctgtatgagattggcctttgttcaca-ttttttcaagcaaatatcacacaataaattgaatgcagac-------------------------------------------acaaatggcatatcaaacatcaaagaaatttgcaaaagatgcaagactgtactac----------------tttgggtttagaaatttt-----cttttcataaaagcatttataaca--atatgtggtgag-cttttaaag----aata
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530           29597313  824 +  36342412 ttaaaaggaagaa----gaaaaaaagagatcaatttcacttaatattgtctatgatgaagcagtaaaaatgaatttactaaatcacgatcctgg-------------gatattgccagt-atgaaatgtgatgtatatctgagcactcttacagattacctgagaaaaagcacttatgtgactga--cttgaggtgaactaaccacctcaatggagcaacattattaccctcaaaaatgaatgccaaacaacggttattccatcttggatttctggcagatgtttc-ctcaacaatgaatgaagagaatcttgtcatttcaagg-aaaacaaaggactgtgccta-------------------ttgc---caataaaattcgagcttttgagc----agttagaatgtttgaaaacttgtacccaccaccatgaactagacatcttcctaagagtattctcataagattgagggcaatatgaat---tatgttttgatattgtataataaaaatgtatcaacattt---aggtctcagtgaaccagtattttcc-aa--------------------------------aggggaaaagattcattcaaagttgcaaacagattaggttttaatggagtatcaaggaa----------------------------tatccac--------------------------------------------------------------------------------------agttatcgaaaactg---------------------------------------------------------------------------------ctattaa----aatattcct--ttttttgaaccaga-------------------------------tatctg--ggagactggattttgtttaca-ttatttcaaccaaaaaacacaaaacaaattgaatgca----------------------------------------------gtagatgacagaccaaatatcaaagagatctgcaaaaatgttaagactgtcctactactctcactgaattcttttactttagaaaatatggttactcttcataaagccatttataataatatatgtagtaagttttttaatg----aatg
i otoGar3.GL873530          I 157 C 0
e aotNan1.NW_018511953v1      3024504 2969 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749894 1438 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747    0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2793983 2613 +   3282555 I

a score=113695.000000
s hg38.chr15_KI270850v1_alt    117646 62 +    430880 ttttaaatatttctgatttaatttctagtgataaataccaatagatataccctacataaacc
s gorGor5.CYUI01015946v1        40761 62 -    378907 ttttaaatatttctgatttaatttctagtgataaataccaatagatataccctacataaacc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25561771 62 - 121039945 ttttaaatattcctgatttaacttctagcaataaataccaatagacataacttacataaacc
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20386900 62 -  24206276 ttttgaatatttctgatttaatttctagtgataaataccagtagatatcacctacatacaga
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       211103 57 -    383355 -----aatattcctgatttaatttctagtgataaataccaattgatataccccacatacacc
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3811887 62 -   4111199 ttttaaatatttctgatttaatttctagtgataaataccaatagatatgccctatataaacc
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1      3027473 62 +   3745603 ttttaaatatttctgatttaacttctagtggtaaataccaatagatatatcctacataaaca
i aotNan1.NW_018511953v1    I 2969 C 0
s otoGar3.GL873530           29598137 50 +  36342412 ttctaaatat------------ttctaatgataaatatcaacagataaaacctatataaaca
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       749894 1438 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2793983 2613 +   3282555 I

a score=978942.000000
s hg38.chr15_KI270850v1_alt    117708 385 +    430880 aaagctccttgggacctcaatgtatttttaagagtgtaaaggaatcctgacccc-aaaacttggagaactgctgCCTTCCCCTCCACTTT-CTTCCTTCTCTAGAATTTCTTCCTTGGAAGAAACATCCCTTTGCCATTCTATATTAACTT-ACATAGTTCCACTGAGGCAAGTTTTGCTACCTCCCTCCCATC--TTTCCACCTCTCTCTC--AACA-CAAAACCTGACCAAAGCATTCTACCAGCCCACCCCATTTCCAGTGATTAGCTGTCAGGTGGGCTAAGCCAAACAAATCTGGGTTTTCCCTGAGACT--AGACCTCTCTTTCTGGGAGAGATGGAATCACAGGGACAAGGTTGGCCACCTTGGGGTAGTGAGAATTCATCCTGCCTA
s gorGor5.CYUI01015946v1        40823 385 -    378907 aaagctccttgggccctcaatgtatttttaagagtgtaaaggaatcctgacccc-aaaacttggagaactgctgCCTTCCCCTCCACTTT-CTTCCTTCCCTAGAATTTCTTCCTTGGAAGAAACATCCTTTTGCCATTCTATATTAACTT-ACATAGTTCCACTGAGGCAAGTTTTGCTACCTCCCTCCCATC--TTTCCACCTCTCTCTC--AACA-CAAAGCCTGACCAAAGGATTCTACCGGCCCACCCCATTTCCAGTGATTAGCTGTCAGGTGGGCTAAGCCAAACAAATCTGGGTTTTCCCTGAGACT--AGACCTCTCTTTCTGGGAGAGATGGAATCACAGGGACAAGGTTGGCCACCTTGGGGTAGTGAGAATTCATTCTGCCTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25561833 387 - 121039945 aaagc-ccttaagtcctcaatatattttcaagagtgtaaaggagccctgacccc-aaaactttgagaactgctgCCTTCCCCTCCACTTTCCTTCCTTCCTTAGAATTTTTTCCTTGGAAGAAACATCCCTTTGCCATTCTATATTAACTT-ACACAGTTCCATTGAGACCAGTTTTGCTACCTCCCTCCCATC--TTTCCTCCTCCCTCTCTTGACA-CAAAACCTGACCAAAGGACTCTATCAGCCCACCCCATTTCCAGTGATTAGCTGTCAGGTGGGCTAAGCCAAGAAAATCTGAGTTTTCCCTGAAGCC--AGACCTCTAGTTCTGGGAGATCTGGAATCACAGAGACAAGGCTGGCCACCTTGGGGTGGTCAGAATTCATCTTGCCTA
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20386962 386 -  24206276 aaagctccttgggccctcaatatatttttaagagtgtaaaggaatcctgacccc-aaaactttgagaactgctacCTTCCCCTCCACTTT-CTTCCTTCCCTTGAATTTCTTCCTTGGAA-AAACATTCCTTTGCCATTCTACGTTAACTT-ACTTAGTTCCATTGAGGCCAGTTTTGCTACCTCTCTCCCGTCGTTTCACATCCTTCTCTT--GACA-CAAAACCTGACCAAAGGAGTCTACCAGCCCACCCCATTTCCAGTGATTAGCTGTCAGGTGGGCTAAGCCAAGCAAATCTGAGTTTTCCCTGAGACT--AGACCTCTCTTTCTGGGAGATATGGAACAACAGGGACGAGATTGGCCACCTTGGGGTAGTCAGAATTCATCTTGCCTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       211160 386 -    383355 aaagctccttgggccctcaatatatttttaagagtataaaggaatcctgacccc-aaaactttgagaactgctgccttcccttccactttccttgcttccctAGAATTTCTTCCTTGGAAGAAACATTCCTTTGTCATTCTATGTTAACTT-ACTTAGTTCCATTGAGGCCAGTTTTGCTACCTCCATTCCATC--TTCCCACCTCTGTCTC--AACA-CAAAACCTGACCAAAGGACTCTACCAGCCCACCCCATTTCCAGTGATTAGCTGTCAGGTGAGCTAAGCCAAGCAAATCTGGGTTTTCCCTGAGACT--AGACCTCTCTTTCTGGGAGATCTGGAATCACAGGGACAAGGCTGGCCACCTTGGGGTAGTCAGAATTCATCCTGTCTA
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3811949 386 -   4111199 aaagctccttggaccctcaatatatttttaagagtgtaaaggaatcctgacccc-aaaactttgagaactgctgccttcccttccactttccttgcttccctAGAATTTCTTCCTGGGAAGAAACATCCCTTTGCCATTCTATATTAACTT-ACATAGTTCCATTGAGGCCAGTTTTGCTACCTCCTTCCCATC--TTTCCACCTCTCTCTC--AACA-CAAAACCTGAGCAAAGGACTCTACCAGCCCACCCCATTTCCAGTGATTAGCTGTCAGGTGGGCTAAGCCAAGCAAATCTGGGTTTTCCCTGAGACT--AGACCTCTCTTTCTAGGAGATCTGGAATCACAGGGACAAGGCTGGCCACCTTGGGGCAGTCAGAATTCATCCTGCCTA
i colAng1.NW_012116021v1    C 0 C 0
s cebCap1.NW_016107979v1       751332 381 +   1024465 aaagctccttgggccctcaatatatttttaagagtgtaaaggagtccagacact-aaaagtttaagaacttctgccttcccctccactttccttccttccctAGTATTTCTTCCGTGGAAGAAATATCCCTTTGCCATTTTATATTAATTT-ATACAGTTCCATTGAGGCCAGTTTTGCTACCTCCCTCCCATC--CTTCCACCTCCCTCTCTTGACA-CAAAATCTGACCAAAGGACTCTACCAGCATACCCCATTTCCAGAGATTAGCTATCAGGTGGGCTAAACAAAGAAAATCTGAGTTTTCCCTAAGG--------CTCTCTTTCTAGGAGATCTGGAATCACAGGGACAAGCCTAGCCA-CTTGGGGTAGTCAGAATTCATCCTGACTA
i cebCap1.NW_016107979v1    I 1438 C 0
s aotNan1.NW_018511953v1      3027535 388 +   3745603 aaagctccttgggccctcaatatatttttaagagtgtaaagaagtccagacact-aaaagtttgagaacttctgccttcccctccactttccttccttccctAGTATTTATTCCGTGGAAGAAAGATCCCTTTGCCATTCTATATTAACTTAATATAGTTCCACTGAGGCCAGTTTTGCTACCTCCCTCCCATC--CTTCCACCTCCCTCTCTTGACA-CAAAATCTGACCAAAGGACTCTACCAGCATACCCCATTTCCAGAGATTAGCTATCAGGTGGGCTAAACCAAGAAAATCTGAGTTTTCCCTAAGGCT--AGACCTCTCTTTCTAGGAGATCTGGAATCACAGGGACAAGGCTAGCCA-CTTGGGGTAGTCAAAATTCATCTTGCCTA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530           29598187 379 +  36342412 aaggctccttgaaacctcaatatatttt---gagtgtaaaggaaccctgacttcaaaaactttgcgaactgctgCCTTTCCCTCTATTTTCTCCCCTCAACTAGAATTTCTTCCTTGGAAGAAACATCCTTTTATCATTCTTTACGAACCT-TTGTAGCTCCACTGGGACTAGTTTTGCTACCTCCATCCCATC--TTTTTCCTTCCCTCCCATGACATTAACACCTGACCAAAAGA--CTGACAGCCCACTCCACC--------TTATCTGTCAGGTGGACTAAGCCAGGAAAATTCAGGCCTTTCTTGAGGCTAGAGAGCTCTCTTTCTGGGAGACCTGGAGTCTCAAGGATAATGTTGGCCTATCTGGGGTAGTCAATATACATCAGGCGTA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2793983 2613 +   3282555 I

a score=16595.000000
s hg38.chr15_KI270850v1_alt    118093 10 +    430880 AACAGGGAGA
s gorGor5.CYUI01015946v1        41208 10 -    378907 AACAGGGAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20387348 10 -  24206276 AATGGGAAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       211546 10 -    383355 AACAGGGAGA
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3812335 10 -   4111199 AACAGGGAGA
i colAng1.NW_012116021v1    C 0 C 0
s cebCap1.NW_016107979v1       751713 10 +   1024465 AACAGGAAGA
i cebCap1.NW_016107979v1    C 0 I 350
s aotNan1.NW_018511953v1      3027923 10 +   3745603 AACAGGAAGA
i aotNan1.NW_018511953v1    C 0 I 348
s otoGar3.GL873530           29598566  2 +  36342412 --------GA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25562220  0 - 121039945 C
e saiBol1.JH378276            2793983 2613 +   3282555 I

a score=157424.000000
s hg38.chr15_KI270850v1_alt    118103 160 +    430880 ATTCAAACAAGTTTCTAGAAAGCCAAACTACTTTCTAGAAAGTCAAAGATAATTATATTTTTTGCCATGACTGTAAGAATGCCCATTTCATTGCACACTTTCTAACATTTTTACCAATCTGATAAATAAAAGCTGGTACTGAGATGAAAAAAAggctggg
s gorGor5.CYUI01015946v1        41218 160 -    378907 ATTCAAACAAGTTTCTAGAAAGCCAAACTACTTTCTAGAAAGTCAAAGATAATTATATTTTTTGCCATGACTGTAAGAATGCCCATTTCATTGCACACTTTCTAACATTTTTACCAACCTGATAACTAAAAGCTGGTACTGAGATGAAAAAAAggccggg
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20387358 159 -  24206276 GGTTAGGCAAGTTTCTAG-AAGCCAAACTGCTTTCTGGAAAGCCAAAGATAATTATACTTTCTGCCACGACTGTGAGAATGCCCATTTCATTGCACACTTTCTAATATTTTTACCAATCTGATAAGTAAAAGCTGGTACCTAGAAGAAGAAAAggccggg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       211556 160 -    383355 GTTCAGGCAAGTTTCTAGAAAGCCAAACTACTTTCTAGAAAGTCAAAGATAATTATACTTTCTGCCATGACTGTGAGAATGCCCATTTCATTGCACACTTTCTAACATTTTTACCAATCTGATAAATAAAAGCTGGTACCAAGAAGAAAAAAAGTccagg
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3812345 160 -   4111199 GTTCAGACAAGTTTCTAGAAAGCCAAACTACTTTCTGGAAAGTCAAAGATAATTATATTTTTTGCCATGACTGTAAGAATGCCAATTTCACTGCACACTTTCTAACATTTTTACCAATCTGATAAATAAAAGCTGGTACTGAGAAGAAAAAAAggctggg
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530           29598568 124 +  36342412 ------GCCAGTATATGG--AGACAAATCACTTTCTAAAAAGTCATAAA-AAGTATACTTCCTGCCATGGCTATGAGAACACCCACTTCACTGCACACTTGCTAACATTTTTTCCAATCTGA----TAAAAGCTGGT-----------------------
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3027933 348 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       751723 350 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25562220   0 - 121039945 C
e saiBol1.JH378276            2793983 2613 +   3282555 I

a score=151919.000000
s hg38.chr15_KI270850v1_alt    118263 196 +    430880 cacagcggctcacacctgtattcccaacactttgggaggctgaagtgggcaaatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaactccgtttctactaaaaatacaaaaattagccaggcatggtggcatgcgcctgtaatctcagctactcgggaggctgaggcaggagaattgcttga
s gorGor5.CYUI01015946v1        41378 196 -    378907 cacagtggctcacacctgtattccaaacactttgggaggctgaagtgggcaaatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaactccgtctctgctaaaaatacaaaaattagccaggcatggtggcatgcgcctgtaatctcagctactcgggaggctgaggcaggagaattgcttga
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20387517 196 -  24206276 tgtggtggctcatgcctgtaatcccagcactttgggaggccaaggtgagtggatcacccaaggtcaggagctccagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaggcatggtggcaggctcctgtaatccctgctactcgggaggctgaggcaggagaatcacttga
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       211716 196 -    383355 tatggtggctcatgcctgtaatcccagcacttcgggaggccgaggcgggcagatcacctgaggtcaggagttcgagacctgcctggaaaacatggtgaaatccgttctctactaaaaatgcaaaaattagccaggaatggtggcaggtgcctgtaatcccagctacttgggaggctgaggcaggagaattgctcga
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3812505 196 -   4111199 cacagaggctcacgcctgtaatcccaacactttgggaggctgaggtgggaaaatcacctaaagtcaggagttcaagaccagcctggccaacatggtgaaagcccgtctctactaaaaatacaaaaattagccaggcatggtggcacgcacctgtaatcccagctacttgggaggccgaggcaggagaatctcttga
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3027933 348 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       751723 350 +   1024465 I
e otoGar3.GL873530           29598692   0 +  36342412 C
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25562220   0 - 121039945 C
e saiBol1.JH378276            2793983 2613 +   3282555 I

a score=261983.000000
s hg38.chr15_KI270850v1_alt    118459 353 +    430880 acccaggaggtggaggttgcagtga-----gatcacgccattgcactccagcctgggtgacaagaacaagacttcatctcaaaaaaaaaaagaaaaaaaaaagaaaaaaaaaGTTCCCATACAATATAATTTCTTCCATCTCTGGAAACAAATTCAGCAATGAGAACTGAAAGTCACCACGT---GGAAGGTTTCAAGG----------------------ATTTACGTCTACCTACTGATGTCTAAAGCATTAGTTAAGTTAC---AAAAAAATacgcacacac--gcgcacgcacacacacacat--acCC--GTATGTATTCAGTACCAGAAAACATGACTGACTACATGGTAAAGTCATCCAACAGAAAGCACACAATAACTGAAGGC
s gorGor5.CYUI01015946v1        41574 342 -    378907 acccaggaggtggaggttgcagtga-----gatcacgccattgcactccagcctgggcgacaagaacaagacttcatctcaaaaaaaaa-------------gaaaaaaaaaGTTCCCATACAATATAATTTCTTCCATCTCTGGAAACAAATTCAGCAATGAGAACTGAAAGTCACCACGT---GGAAGGTTTCAAGG----------------------ATTTAGGTCTACCTACTGATGTCTAAAGCATTAGTTAAGTTAC---AAAAAAATacgcacacacacgcgcacgcacacacacacat--acCC--GTGTGTATTCAGTACCAGAAAACATGACTGACTACATGGTACAGTCATCCAACAGAAAGCACACAATAACTGAAGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20387713 340 -  24206276 atctgggaggcagaggttgtagtgagccaagatcatgccactgcactccagcctgggcgacaagagcgagactttatctcaaaaaa----------------------caaaTTTTCCATACAATATAATTTGCTCCATGTCTAGAAACCAATTCAGCAATGAGAACTGAAAGCC-CCACTT---GGAAGGTTTCAAGG----------------------ATTTAGCTCTACCTATGGATGTCC-AAACATTAGTTAAGGTAGAAAAAAAAAATacacacacacacacacacacacacacacacaTTCACCC--CTATGTATTCAGTACCAGGAAACACAA-TGACTAGACGGTACAGTCATCCAACACAAAGCACACAATAACTGAAGGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       211912 341 -    383355 gcctgggagatggaggttgcagtgagccaagttcacgccattgcactccagcctggatgacaagagcaaggcttcatctcagaaaa-----------------------aGAGTTTCCATACAATATAATTTGTTCCATCTCTAGAAAGCAATTCAGTAATGAGAACTGAAAGCCACCACTT---GGAAGGTTTTAAGG----------------------ATTTAGCTCTACCTATTGATGTCTAAAACATTAGTTAAGacag---aaaaacacacatatacacacacaaacacacacacacacCCTCCCCCCGCTATATATTCAGTACCAAGAAACATGACTGACTTGATGGTACAGTCATCCAACACAAAGCACACAGTAACTGAAGGC
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3812701 350 -   4111199 acccgggaggtggaggttgcagtgagctgtgatcacaccattgcactccagcctgggagacaagaacaagacttcgtctcaaaaaaaaaagg----------gaaaaaagaaGTTCCCATACAATATAATTTCTTCCATCTCTGGAAACAAATTCAGCAATGAGAATTGAAAGTCACCACGT---GGAAGGTTTCAAGG----------------------ATTTAGGTCTACCTATTGATGTCCAAAGCATTAGTTAAGTTAG---AAAAAAATacgcacacacacgcgcacgcacacacacacaT--ATCC--CTATGTATTCAGTACCAGGAAACATGACTGACTACATGGTACAGTCATTCAACAGAAAGTACACAATAACTGAAGGC
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530           29598692 243 +  36342412 ACCTAGAAGG------------------------------------------------------------------------AAAA-----------------------ACAATTCCTATACAATATAATT---------TCTAGAGACCAATTCAGCAATAAGAAATTAAAGTCACCACTTCTAGGAAGGTTTCAAAGAACATGATCTACATTCACAAGTAATTAGCTCTAGCTATTAATGTTCAAAGCATTATTTATGACAG---AAAAAAAAACCCAAACAC--------------------AT--------TTATATGTGCAGTACTAGGAGACAAGACTGACTAGATAGTACACTCAT--------------ACAACAATTGGAGCC
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3027933 348 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       751723 350 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25562220   0 - 121039945 C
e saiBol1.JH378276            2793983 2613 +   3282555 I

a score=217005.000000
s hg38.chr15_KI270850v1_alt    118812 181 +    430880 AATGTAGAGGA--GTAAGTT-ATAACATGGATCTACAatactgttgagtgaaaaagcagattac-aaacaaatatctga-tttt-t----aagggagaggaaacatatacaagcacaggagaaaagaggtgagcagatgac-tggaaagatacaaatttctgacagtggcaccttctgagtggtagaat--tac--
s gorGor5.CYUI01015946v1        41916 181 -    378907 AATGTAGAGGA--GTAAGTT-ATAACATGGATCTACAATACTGTTGAGTGAAAAAGCAGATTAC-AAACAAATATCTGA-TTTT-T----AAGGGAGAGGAAACATATACAAGCACAGGAGAAAAGAGGTGAGCAGATGAC-TGGAAAGATACAAATTTCTGACAGTGGCACCTTCTGAGTGGTAGAAT--TAC--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25562220 177 - 121039945 AATATA-AGGA--GTAAGTT-ATAACATGGATCTACAATATTGTTGAGTGAAAAAGCAGATTAC-AAAAAA--ATCTGATTTTT-T----AAGGGAGAGGGAACATACATAAGAATCAGAGAAAAGAGATGAGCAGATAAC-CGGAAGGATACAAAATTCTGATAGTGGTATATTCTGAGTGGTAGAAT--T----
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20388053 181 -  24206276 ACTGTAGAGGA--GTAACTT-CTGACACGGATCTACAATACTGTTGAGTGAAAAAGCAGATTACAAAAAAAAAATCTGA-TTTTGT----AAGGGAGAGGGAACACATACAAGCACAGGAGAAAAGAGATGAGCAGAGGAC-TGGAAAGATACAAAATTCTCATGGTGGCACATTCTGAGTGGTAGAAT--T----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       212253 180 -    383355 ACTGTAGAGGA--GTAACTT-CTGACACGGATCTACAATATTGTTGAGTGAGAAAGCAGATTAC-AAAAACAAATCTGA-TTTTGT----AAGGGAGAGGAAACACATACAAACGTAGGAGAAAAGAGATGAGCaaaggac-tggaaagatacaaaattctgatagtggtacattctgagtggtagaat--t----
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3813051 182 -   4111199 AATGTAGAGAA--GTAAGTT-ATGACATGGATCTACAATATTGTTGAGTGAAAAGGCAGATTAC-AAACAAAAATCTGA-TTTT-T----AAGGGAGAGGAAACATACACAAGCATAGGAGAAAAGAGATGAGCAGATGACTTGGAAAGATACAAATTTCTGATAGTGGCACCTTCTGAGTGGTAGAATTAT----
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530           29598935 176 +  36342412 ACTGTACAGGACGGTGTGCTAATGACACAAACCTACAATATTGTGCAGTAAGAA---AGATTAC-AAAATA--ATCTGA-TCTT-TTAAGAAGAGGGAGGGAgtaaatataagtgtaagag-aaagagacagctaaaagat------atataccaaaat-tgagagtggtatcttctgagtggtaagat--g--ac
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3027933 348 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       751723 350 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2793983 2613 +   3282555 I

a score=1109.000000
s hg38.chr15_KI270850v1_alt    118993 3 +    430880 ata
s gorGor5.CYUI01015946v1        42097 3 -    378907 ATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25562397 3 - 121039945 ATA
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20388234 3 -  24206276 ATC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       212433 3 -    383355 atc
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3813233 3 -   4111199 ATA
i colAng1.NW_012116021v1    C 0 C 0
s cebCap1.NW_016107979v1       752073 3 +   1024465 ATA
i cebCap1.NW_016107979v1    I 350 C 0
s otoGar3.GL873530           29599111 1 +  36342412 a--
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3027933 348 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2793983 2613 +   3282555 I

a score=317506.000000
s hg38.chr15_KI270850v1_alt    118996 152 +    430880 ggtaatattt---tctagttttgcctaaaagttttctaaatttcttaaaataagaaggttttgttttccatattacaaaaTAT--CCATCACCCCAGGAAATTTAACCTTTGGCACAAACTCTACAACATGTTCAAAGTTTGTTCAGTTGAATATTT
s gorGor5.CYUI01015946v1        42100 152 -    378907 GGTAATATTT---TCTAGTTTTGCCTAAAAGTTTTCTAAATTTCTTAAAATAAGAAGGTTTTGTTTTCCATATTACAAAATAT--CCATCACCCCAGGAAATTTAACCTTCGGCACAAACTCTACAACATGTTCAAAGTTTGTCCAGTTTAATATTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25562400 151 - 121039945 AGTAATATCT---CCTAGTTTTGACTAAAA-TTTTTTAAATGTCTTACAATAAGAAGGTTTTGTTTTCCATATTATAAAATAT--CCACCACGCCAGGCAACTTAACCTTCAGCACAAACTCTACATCATGTTCAAGGTTTGTTCAGCTTAATATTT
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20388237 141 -  24206276 GGTATGATTT---TCTAGTTTTGCCTAAAAATTTTCTAAACTTCTTAAAAT---AAGTTTTTGTTATACATATTATAAAATAT--CCATCACCCCAGGAAATTTAACCTTGAGCACA--------AACATGTTCAATGTTTGTTCGGTTTAATATTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       212436 152 -    383355 agtaatattt---tctagttttgcctaaacattttccaaatttcttaaaataagAAGTTTTTGTTATCCATATTATAAACTAT--CCATCACCCCAGGAAACTTCACCTTGAGCACAAACTCTACAACATGTTCAAAGTTTGTTCAGCTAAATATTT
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3813236 147 -   4111199 GGTAATATTT---TCTAGTTTTGCCTAAAAAATTGCTAAATTTCTTAAG-----AAGGTTTTGCTTTCTATATTATAAAATAG--CCATCACCCCAGGAAATTTAACCTTCAGCACAAACTCTACATAGTGTTCAAAATTTGTTCAGTTTAAGAGTC
i colAng1.NW_012116021v1    C 0 C 0
s cebCap1.NW_016107979v1       752076 151 +   1024465 GGTAACATTT---CCTAGTTTTGACTAAAT-TTTTAAAAATTTATTAAAATAAGAAGGTTTTGTTTTCCATATTATAAAATAC--CCACCACCCCAGGAAACTTAACCTTCACCAAAAACTCTACATCATGTTCAAAGTTTGTTCAGTTTAATATTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3028281 151 +   3745603 GGTAATATTT---CCTAGTTTTGACTAAAT-TTTTTTTACTTTCTTAAAATAAGAAGGTTTTGTTTTCCATATTATAAAATAC--CCACCACCCCAGGAAACTTAACCTTCACCACAAACTCTACATCTTGTTCAAAGTTTGTTCAGTTTAATATTT
i aotNan1.NW_018511953v1    I 348 C 0
s otoGar3.GL873530           29599112 147 +  36342412 ggtgatttttttcttcagttcttcttACAG-ATTTCTAAATTCCTTACG-TAAGAATGTCTTGTGTTCTATATTATATATTTCTACCACTACCCCTGGAAACTTAATCTT---CACAAACTCTCCA---TGTTC-AGGTTTGTTCA-CTTAATATTT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2793983 2613 +   3282555 I

a score=1288436.000000
s hg38.chr15_KI270850v1_alt    119148 439 +    430880 AAGAGACAATCTAT-----TTTGAAAGACATTTAA---AATGACCAATATTTAAACCTATGCATTAATATTTTTCAAT------CACGTTTTAAATTTTGTAATTTTGA----------TAAGTTTTAGATCCATCTTGAAAAGATAAATTTT----CTGTTTGTCTTTA----AAATATTACCTA-CAATATGCCTGTTTTTATACAGTTAATGGTGCTCAAAAATCGCAATATAAATTCAGGCAGTGTTCCT-TCTATAGAATGTGTAAGTGCTTCTAATACTGCTCTTTTTCAC------CAGTTATGAAA-------------------ACACGGAACAATTATCTAAGCATCTAATTATTCAGGTCCTTTGTTTCTCCTCCA---TTCTGTTAGTTTTATACTAATTTCAAGGCCTGTGAGGATGAAGTTGTCTGTGACAGCTACCACAAAGGTTACTATAAGCAGACAAATTTCCAGCAAGTTTATCACCACTAC
s gorGor5.CYUI01015946v1        42252 439 -    378907 AAGAGACAATCTAT-----TTTGAAAGACATTTAA---AATGACCAATATTTAAACCTATGCATTAATATTTTTCAAT------CACGTTTTAAATTTTGTAATTTTGA----------TAGGTTTTAGATCCATCTTGAAAAGATAAATTTT----CTGTTTGTCTTTA----AAATATTACCTA-CAATATGCCTGTTTTTAAACAGTTAATGGTGCTCAAAAATCGCAATATAAATTCAGGCAGTGTTCCT-TATATAGAATGTGTAAGTGCTTCTAATACTGCTCTTTTTCAC------CAGTTATGAAA-------------------ACACAGAACAATTATCTAAGCATCTAATTATTCAGGTCCTTTGTTTCTCCTCCA---TTCTGTTAGTTTTATACTAATTTCAAGGCCTGTGAGGATGAAGTTGTCTGTGACAGCTACCACAAAGGTTACTATAAGCAGACAAATTTCCAGCAAGTTTATCACCACTAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25562551 463 - 121039945 AAGAGACAATCTAC-----TTTGAAAGACATCTAAAATAATGACCAATATTTAAACCTATGCATTAATA-TTTTCAATCTTTCACATGCTTTAAGTTTTGTAATTTTGATAAGGTTAACTAAGCTTTATATCCATCTTGAAAAGATAAGTTTTC---CTATTTCTCTTTAAAATAAATATGACCTA-CAGTATATCAGTTTTTAAACAGTGAATGGTGCTCAAAAATCCCAATACAAATTCAGGCAGTTTTCCCGTACATAGAATGTTTAAGTGCTTCTAGCACCGCTCTTTTTCAC----CACAGTTATGAAA-------------------ACA--GAACAATTATCTAAGCATCTAATTACTCAGGTCCTTTGTTCCTCATCCA---TTCTATTAGTTTTATAGTAATTTTAACGCCTGTGAGGATGAAGTTGTCTCTGACAGCTACCATAAAGATTATTGTAAGTGGACAAATTTCAAACAAGTTCATCACCACTAC
i nomLeu3.chr6              C 0 M 1566
s chlSab2.chr29              20388378 435 -  24206276 AA--------------------GAAAGACATCTAAAATGATGACTAATATTTAAACCTATGCATTAATATTTTTCAAT----AATATGCTTTACATTTTATAATTTTGATAAGGT----TAAACTTTATATCCATCTTGAAAAGATAAGTTTT----CTATTTGTCTTTA----AAATATGACCCA-CAATATGCCTGTTTTTAAACAGTGAATGATGCTCAAAAATCGCAATATAAATTCAGGCAGTGTTCCT-TACATGGAATGTTTAAGGGTTTCTAACACTGTTCTTTTTCAC------CGGTTATGAAA-------------------ACACAGAACAATTATCTACACATCTAATTATTCAGGTCCTTTGTTTCTCCTCCA---TTCTATTAGTTTTATAGTAATTTTAAGGCCTGTGAGGATGAAGTTGTCTGTGACAGTTACCACAAAGGTTACTATAAGCAGACAAATTTCAAACAAGTTTGTCACCGCTAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       212588 450 -    383355 AAGAGACAATCTAC-----TTTGAAAGACATCTAAAGTGATGACCAATATTTAAATCTATGCATTAACATTTTTCAAT----CATAGGCTTTAAATTTTGTAATTTTGATAAGGT----TAAGCTTTATATCCATCTTGAAAATATAAGTTTT----CTATTTGTCTTTA----AAATATGACTTA-CAATATGCCAGTTTTTAAACAGTGAATGATACTTAAAAATTGCAATATAAACTCAGGCAGTGTTCCT-TACATAGAATATTTAAGTGCTTCTAACACTGTTCTTTTTCAC------CTGTTATGAAA-------------------ACACAGAACAATTTTCTAAGCATCCAATTATTCAGGTCCTTTGTTTCTCCTCTG---TTCTGTTAGTTTTATAGTAATTTCAAGGTCTGTGAGGATGAAGTTGTCTGTGACAGCTACCACAAAGGTTACTATAAGTGGACAAATTTCAAAGAAGTTTATCACCACTAC
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3813383 443 -   4111199 AA-------TCTAT-----TTTGAAAGACATTTAAAATGATGACCAATATTTAAACCTATGCATTAATATTTTTCAAT----CACATGCTTTAAATTTTGTAATTTTGATAAGGT----TAAGCTTTAGATCCATCTTGAAAAGATAAGTGTT----CTATTTGTCTTTA----AAATATGACCTA-CAATATGCCAGCTTTTAAACAGTGAACGGTGCTCAAAAATCGCAATATAAATTCAGGCAGTGTTCCT-TACATAGAGTGTGTAATTGCTTTTAATACTGCTCTTTTTCAC------CAGTTATGAAA-------------------ACACAGAACAATTATCTAAGCATCTAATTATTCAGGTCCTTTGTTTCTCTTCCA---TTCTATTAGTTTTATAGTAATTTTAAGGCCTGTGAGGATGAAGTTGTCTGTGACAGCCACCACCAAGGTTACTATAAGCAGACAAATTTCAAACAAGGTTATCACCACTAC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2796596 452 +   3282555 aaaagacaaTCTAC-----CTGGAAAGACATCTAAAATGATGCCTAATATTTAAACCTATGCATTAATAGTTTCAATT----CACATCCTTTAAGTTTTGTAATTTTGATAAGGTTAACTAAGCTTTATATCCATCTTGAAAAGATAAGTTTTCCTACTATTTCTCTTTAAAATAATTATGACCTA-CAATATGCCAGTTT----------AATGGTGCTCTAAAATCCCAATAGAAATTCAGGCAGTTTTCCA-CACATACAATGTTTACGTGCTTCTAGCACTGCTCTTTCACCA------CAGTTAGGAAA-------------------ACACAGAACAATTATCTAAGCGTCTAATTATTCGGGTCCTTTGTTCCTCCTCCA---TTCTATTAGTTTTATAGTAATTGTAAGTCCTGTGAGGATGAAGTTGTCTGTGACAGCTACCATAAAGATTACTGTAAGTGGACAAATTTCAAGCAAGTTCATCACTGCTAC
i saiBol1.JH378276          I 2613 C 0
s cebCap1.NW_016107979v1       752227 446 +   1024465 AGGAGACAATCTAC-----TTGGAAAGACATCTAAAATGATGCCTAATATTTAAACCTATGCATTAATATTTTCAATT----CACATGCTTTAAGTTTTGTAATTTTGATAAGGTTAAATAAGCTTTATATCCACCTTGAAAAGATAAGTTTTCCTACTATTTCTCTTTAAAATAAATATGACCTA-CAATATGCCAGTTT----------AATGGTGCTCCAAAATCCCAATATAAATTCAGGCAGTTTTCCA-GACATACAATGTTTAAGTGCTTCTAGCACTGCTCTTTCACCA------CAGTTATGAAA-------------------ACACAGAACAATTATCTAAGCATCTAATTATTCAGGTCCTTTGTTTCTCCTCCA---TTCTATTAGTTTTATA------GTAAGTCCTGTGAGGATGAAGTTGTCTGTGACAGCTACCATAAAGATTACTGTAAGTGGACAAACTTCAAGCAAGTTCATCACTGCTAC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3028432 452 +   3745603 AAGAGACAATCTAC-----CTGGAAAGACATCTTAAATGATGCCTAATATTTAAACCTATGCATTAATATTTTCAATT----CACATGCTTTAAGTTTTGTAATTTTGATAAGGTTAACTAAGCTTTATATCCATCTCGAAAAGATAAGTTTTCCTACTATTGCTCTTTAAAATAAATATGACCTA-CAATATGCCAGTTT----------AATGGTGCTCCAAAATTCCAATATAAATTCAGGCAGTTTTCCA-CACATACAATGTTTAAGTGCTTCTAGCACTGCTCTTTCACCA------CAGTTATGAAA-------------------ACACAGAACAATTATCTAAGCATCTAATTATTCAGGTCCTTTGTTTCTTCTCCA---TTCTATTAGTTTTATAGTAATTGTAAGTACTGTGAGGATGAAGTTGTCTGTGACAGCTACCATAAAGATTATTGTAAGTGGACAAATTTCAAGCAAGTTCATCACTGCTAC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530           29599259 474 +  36342412 AAAAGACAATCTACAGTATTTTGAAAG--ATTTAA---AATGACCAATTCTTAAACCTATATATTAATATTTTCAATC-TTTCATACACTTCAAGTTTTCTGATTTTTATAAGGTTAACTGGGCTTTGTATCTATCTTGAAAAGAT-AGTTTTCTTACTATGGCTTTTTT----AA--ATGACCTGTTAATATGCCAATTTTTAAACATTAAATGATGCTCAAAAATCCCAATAGGAG-TCAGGCAGTTTTCCT-TA-ACAGGATGTTT----GCTTCTAACACAGCTCTTTTTTAAAAACCACAGTTTTGAAAATTTTAAAGACTTAAGTACATACAAAAAAATTGTCCAAGCATCTAATTATTTAGGTCCTTTGTTTCTACTCCATTCTTCTATTAGTTTAGCAATGATTTTAAGGCTTGC-AGGATGAAGTTGTCCATGACAGCCAACATAAAGGTTACTGTAAACAGAC-AACTTCAAACAAGTTCACCATC-----
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=107501.000000
s hg38.chr15_KI270850v1_alt    119587 46 +    430880 CA-TCCCACCATAAAACTGTCTCAATCAAGGGCAACACAATTCAAGG
s gorGor5.CYUI01015946v1        42691 47 -    378907 CAACCCCACCATAAAACTGTCTCAATCAAGGGCAACACAATTCAAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20388813 47 -  24206276 CATCCACACCATAAAACTGTCTCAATCAAGGGCAACACAATTCAAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       213038 45 -    383355 CATCCCCACCATAAAAC--TCTCAGTCAAGGGCAACACAATTCAAGG
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3813826 47 -   4111199 CATCCCCACCACAAAACTGTCTCAATCAAGGGCAACATAATTCAAGG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2797048 44 +   3282555 CATCCCCACCATAAAACCGTCTTAATC---GAGAACACGACTCAAGG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       752673 47 +   1024465 CATCCCCACCATAAAACTGTCTTAATCGAGGAGAACACGACTCAAGG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3028884 47 +   3745603 CATCCCCACCATAAAACTGTCTTAATCGAGGGGAATACGACTCAAGG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530           29599733 43 +  36342412 ----CCCACCATAAACTTGTCCTAACATGGGGCAACACAGCTCAAAG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25563014 1566 - 121039945 M

a score=121645.000000
s hg38.chr15_KI270850v1_alt    119633 50 +    430880 TTAGTCAAGACAACCTCTTTACCTGTCACTGCTTAAGAAAAGGATTTTT-T
s gorGor5.CYUI01015946v1        42738 50 -    378907 TTAGTCAAGACAACCTCTTTACCTGTCACTGCTTAAGAAAAGGATTTTT-T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25564605 47 - 121039945 TTAACCAAGCCAACCTCTTTACCTGTCACTGCTTAAGAAAAAGATTT----
i nomLeu3.chr6              M 1566 C 0
s chlSab2.chr29              20388860 50 -  24206276 TTAGCCAAGACAACCTCTTTACCTGTCACTGTTTAAGAAAAGGATTTTT-T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       213083 50 -    383355 TTAACTAAGAGAATCTCTTTACCTGTCACTGCTTAAGAAAAGGATATTT-T
i manLeu1.NW_012099388v1    C 0 C 0
s colAng1.NW_012116021v1      3813873 49 -   4111199 TTAGC-AAGGCAACCTCTTTACCTGTCACTGCTTAAGAAAAGGATTTTT-C
i colAng1.NW_012116021v1    C 0 n 0
s saiBol1.JH378276            2797092 46 +   3282555 CTAACCAAGCCAACCTCTTTATCTGTCACTGCTTAAG-----GATTTTTGT
i saiBol1.JH378276          C 0 I 6
s cebCap1.NW_016107979v1       752720 46 +   1024465 CTAACCAAGCCAACCTCTTTACCTGTCACTGCTTAAG-----GATTTTTGT
i cebCap1.NW_016107979v1    C 0 I 6
s aotNan1.NW_018511953v1      3028931 45 +   3745603 CTAACCAAGCCAACCTCTTTACCTGTCACTGCTTAAG-----GATTTTT-T
i aotNan1.NW_018511953v1    C 0 I 6
s otoGar3.GL873530           29599776 36 +  36342412 TTCATCAAGCCAACTTCTTTGCCTGTGACTGCTTAA---------------
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=309164.000000
s hg38.chr15_KI270850v1_alt    119683 129 +    430880 GGTCTTATTTAGAAATAACTT----TATCTATTTTTCTCCAT-AATTCCACT--GAGACCAATGTGTGCCTCTATCTCAAGCACCAGCAAGCAAAACTGCCTG-CCAGTATGTTCAGTTTTTGTATCTTTCCAAATG
s gorGor5.CYUI01015946v1        42788 130 -    378907 GGTCTTATTTAGAAATAACTT----TATCTATTTTTCTCCATTAATTCCACT--GAGACCAATGTGTGGCTCTATCTCAAGCACCAGCAAGCAAAACTGCCTG-CCAGTATGTTCAGTTTTTGCATCTTTCCAAATG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25564652 133 - 121039945 -GTCTTATTTAGAAGTAACTTTCTGTATCTATTTTTCTCCAT-AAATCCACT--GAGACAATTGTGTGGCTCTATCTCAAGCACCAGCAACCAAAACTGGTTGATCAGAATGGTCAGTTTTTCTATCTTTCCAAATG
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20388910 133 -  24206276 GGTCTTATTTAGAAATAACTTTCTGTATCTATTTTTCTCCAC-AAATCCACG--GAGACCAACGTGTGGCTCTATCTCAAGCACCAGTAGGCAAAACTGCCTG-CCAGTATGCTCAGTTTCTGTATCTTTTCAAATG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       213133 105 -    383355 GGTCTTATTTAGAAATAACTTTCTGTATCTATTTATCTCCAT-AAATCCACT--GAGACCAA----------------------------GCAATACTGCCTG-CCAGTATGTTCAGTTTTTGTATCTTTCCAAATG
i manLeu1.NW_012099388v1    C 0 C 0
s saiBol1.JH378276            2797144 133 +   3282555 TGTCTTATTTAGAAATAACTTTCTGTATCTATTTTTCTCCAT-AAATCCACT--GAGACCATTATGTGGCTCTATCTCAAGCACCAGCAAGCAAAACTGCCTG-CCAGAATGGTCAGTTTTTGTATCTTTCCAAATG
i saiBol1.JH378276          I 6 C 0
s cebCap1.NW_016107979v1       752772 133 +   1024465 TGTCTCATTTAGAAATAACTTTCTGTATCTATTTTTCTCCAT-AAATCCACT--GAGACCATTGTGTGGCTCTATCTGAAGCACCAGCAAGCAAAACTGCCTG-CCAGAATGGTCAGTTTTTGTATCTTCCCAAATG
i cebCap1.NW_016107979v1    I 6 C 0
s aotNan1.NW_018511953v1      3028982 133 +   3745603 TGTCTTATTTAGAAATAACTTTCTGTATCTATTTTTCTCCAT-AAATCCACT--GAGACCATTGTGTGGCTCTGTCTCAAGCACCAGCAAGCAAAACTTCCTG-CCAGAATGGTCAGTTTTTGTATCTTCCCAAATG
i aotNan1.NW_018511953v1    I 6 C 0
s otoGar3.GL873530           29599812 117 +  36342412 ------------AAATAAATT----TCTATATTTTTCTACAT-AAATCCACTAAGAGACCAATGTGTGGCTC--TCTCAAGCATCAGCCAGCAAAACTGCTTG-ACAGAATGCTCAGTTTTACTGTCTTTCCAAATG
i otoGar3.GL873530          C 0 I 66
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=37385.000000
s hg38.chr15_KI270850v1_alt    119812 17 +    430880 TAGGGCACAGCTATCTT
s gorGor5.CYUI01015946v1        42918 17 -    378907 TAGGGCACAGCTATCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25564785 17 - 121039945 TAGGACACAGCTATTTT
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20389043 17 -  24206276 TGCAGCACAGCTATCTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       213238 17 -    383355 TAAGACACAGCTATCTT
i manLeu1.NW_012099388v1    C 0 C 0
s saiBol1.JH378276            2797277 17 +   3282555 TAGGACACAGCTATCTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       752905 17 +   1024465 TAGGACACAGCCATCTT
i cebCap1.NW_016107979v1    C 0 I 50
s aotNan1.NW_018511953v1      3029115 17 +   3745603 TAGGACACAGCTATCTT
i aotNan1.NW_018511953v1    C 0 I 51
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530           29599929 66 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=1501.000000
s hg38.chr15_KI270850v1_alt    119829  4 +    430880 ----------TTGA
s gorGor5.CYUI01015946v1        42935  4 -    378907 ----------TTGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25564802  4 - 121039945 ----------CAGA
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20389060  4 -  24206276 ----------TTGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       213255  4 -    383355 ----------TTGA
i manLeu1.NW_012099388v1    C 0 I 5249
s saiBol1.JH378276            2797294 14 +   3282555 CAGGGATTTTGTGA
i saiBol1.JH378276          C 0 C 0
e aotNan1.NW_018511953v1      3029132 51 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       752922 50 +   1024465 I
e otoGar3.GL873530           29599929 66 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=18575.000000
s hg38.chr15_KI270850v1_alt    119833 40 +    430880 TA--TCATAATTTTTTGAAAACTGATGCACAAACTTCTTCTT
s gorGor5.CYUI01015946v1        42939 37 -    378907 TA--TCATAATTTTTTGAAAACTGATGCACAAACTTCTT---
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25564806 39 - 121039945 GATTTCGTAATTTTTTTAAAACTGATGCACAAACTTCTT---
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20389064 40 -  24206276 TA--TCATAATGTTTTGAAAACTGAAGCACAAACTTCTTCTT
i chlSab2.chr29             C 0 I 315
s saiBol1.JH378276            2797308 37 +   3282555 -----TTTTTTTTTTTTTTAATTGATGCACAAACTTCTTGTT
i saiBol1.JH378276          C 0 C 0
e aotNan1.NW_018511953v1      3029132 51 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       752922 50 +   1024465 I
e otoGar3.GL873530           29599929 66 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e manLeu1.NW_012099388v1       213259 5249 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=3151.000000
s hg38.chr15_KI270850v1_alt    119873 5 +    430880 GAAAG
s gorGor5.CYUI01015946v1        42976 5 -    378907 GAAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25564845 5 - 121039945 GAAGG
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20389419 5 -  24206276 GAAAG
i chlSab2.chr29             I 315 C 0
s saiBol1.JH378276            2797345 5 +   3282555 GATGG
i saiBol1.JH378276          C 0 C 0
e aotNan1.NW_018511953v1      3029132 51 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       752922 50 +   1024465 I
e otoGar3.GL873530           29599929 66 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e manLeu1.NW_012099388v1       213259 5249 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=2838.000000
s hg38.chr15_KI270850v1_alt    119878 5 +    430880 TTCAg
s gorGor5.CYUI01015946v1        42981 5 -    378907 TTCAg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25564850 5 - 121039945 TTCAG
i nomLeu3.chr6              C 0 I 5
s chlSab2.chr29              20389424 5 -  24206276 TTCAg
i chlSab2.chr29             C 0 C 0
e aotNan1.NW_018511953v1      3029132 51 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       752922 50 +   1024465 I
e otoGar3.GL873530           29599929 66 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e manLeu1.NW_012099388v1       213259 5249 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2797350 0 +   3282555 C

a score=74474.000000
s hg38.chr15_KI270850v1_alt    119883 301 +    430880 ccaggtgcggtagctcacacctgtaatcccagcactttgggaggctgaggcaggcagatcacgaggtcaggaattcaagaccagcctggccaacatggtgaaacctgtctctactaaagctacaaaaattagccaggtgcggtggcaggtgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacctgggcagcagaggttccagtgag-ccaagattgcaccactgtactccagcttgggtgatagagtgagactccatctcaaaataaaaaataaaaaaaagaaT
s gorGor5.CYUI01015946v1        42986 301 -    378907 ccaggtgcggtagctcacacctgtaatcccagcactttgggaggctgaggcaggcagatcacgaggtcaggaattcaagaccagcctggccaacatggtgaaacctgtctctactaaagctacaaaaattagccaggtgtggtggcaggtgcctgtaatcccacctactcaggaggctgaggcaggagaattgcttgaacctgggcagcagaggttccagtgag-ccaagattgcaccactgtactccagcttgggtgatagagtgagactccatctcaaaataaaaaataaaaaaaagaaT
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20389429 295 -  24206276 tcgggctcggtagctcacgcctgtaatcccagcacttcaggaggccaaggcaggcagatcacaaagtcaggagttcaagaccagcctggccaacatgg-------ggtctctactaaaactacaaaaattagctgggtgcggtggcaggtgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttaaacctgggcagcagaggttccagtgagcccgagatcgcgccaccgcactgcagcctgggtgatagagtgagactccatctcaaaattaaaaaaaaaaaaaagaaT
i chlSab2.chr29             C 0 C 0
e aotNan1.NW_018511953v1      3029132  51 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       752922  50 +   1024465 I
e otoGar3.GL873530           29599929  66 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e manLeu1.NW_012099388v1       213259 5249 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25564855   5 - 121039945 I
e saiBol1.JH378276            2797350   0 +   3282555 C

a score=13707.000000
s hg38.chr15_KI270850v1_alt    120184 9 +    430880 TTCAGATAT
s gorGor5.CYUI01015946v1        43287 9 -    378907 TTCAGATAT
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20389724 9 -  24206276 TTCAGATGT
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276            2797350 9 +   3282555 TTCAGAGAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       752972 9 +   1024465 TTCAGAGAT
i cebCap1.NW_016107979v1    I 50 C 0
s aotNan1.NW_018511953v1      3029183 9 +   3745603 TTCAGAGAT
i aotNan1.NW_018511953v1    I 51 C 0
s otoGar3.GL873530           29599995 9 +  36342412 TTCAGAGAC
i otoGar3.GL873530          I 66 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e manLeu1.NW_012099388v1       213259 5249 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25564855 5 - 121039945 I

a score=283097.000000
s hg38.chr15_KI270850v1_alt    120193 142 +    430880 ACAGCAGTTG-TAATTCTTCTGAAGGCTGCTTATGGGACACATTACTTTCATAA-TTTGCTGTTCAATAAATGTGGGGTGGAGAATAAAGTAAATTGACAGAATTACCATATAA------AATAAAATTCTAAGTCCTCTGACAACA--AAA
s gorGor5.CYUI01015946v1        43296 142 -    378907 ACAGCAGTTG-TAATTCTTCTGAAGGCTGCTTATGGGACACGTTACTTTCATAC-TTTGCTGTTCAATAAATGTGGGGTGGAGAATAAAGTAAGTTGACAGAATTACCATATAA------AATAAAAATCGAAGTCCTCTGACAACA--AAA
i gorGor5.CYUI01015946v1    C 0 I 3
s nomLeu3.chr6               25564860 145 - 121039945 ACAGCAGTTG-TAATTCTTCTGAAGGCCAGTTATGGGACACATTACTTTCATAC-TTTGCTGTTCAATAAATGTGGGGT---GAACGAAGTAAATTGACAGAATTAGCATATAGTACCTTAATAAAATTCTAACTGCTCTGACAGCA--AAA
i nomLeu3.chr6              I 5 I 3
s chlSab2.chr29              20389733 142 -  24206276 ACAGCAGCTG-TAATTCTTCTGAAGGCTGGTTATGGGACACATTACTTTCATAC-TTTGTTGTTCAATAAATGTGGGGTGGAGAATAAAGTAAATTGTCAGAATTACCATATAA------AATAAAATTCTAAGTCCTCTGACAACA--AAA
i chlSab2.chr29             C 0 I 3
s saiBol1.JH378276            2797359 148 +   3282555 ACAGCAGTTA-TAATTTTCCTGAAGGCCAGTTATGGGACACATTACTTTCATACTTTTGCTGTTCAATAAATGT-GGGTGAAGAATGAAGTAAATTGACAGAATTAGCATATAATGCCTTAAAAAAATTCTAACTGCTCTAGCAACA--AAG
i saiBol1.JH378276          C 0 I 3
s cebCap1.NW_016107979v1       752981 147 +   1024465 ACAGCAGTTA-TAATTCTCCTGAAGGCCAGTTATGGGACACGTTACTTTCATAC-TTTGCTGTTCAATAAATGT-GGGTGAAGAATGAAGTAAATTGACAGAATTAGCATATAATGCCTTAATAAAATTCTAACTGCTCTGACAACA--AAA
i cebCap1.NW_016107979v1    C 0 I 24
s aotNan1.NW_018511953v1      3029192 147 +   3745603 ACAGCAGTTA-TAATTCTCCTGAAGGCCAGTTATGGGACACATTACTTTCATAC-TTTGCTGTTCAATAAATGT-GGGTGGAGAATGAAGTAAATTGACAGAATTAGCATATAATGCCTTAATAAAATTCTAACTGCTCTGACAACA--AAA
i aotNan1.NW_018511953v1    C 0 I 26
s otoGar3.GL873530           29600004 148 +  36342412 ACAGCAGTTGTTAATTCTTCTGGAGACCAATTATAGAACAA--TACTTTCACAC-TTTGCTGTTCAATAAATGG-AGATGAAGAATGAAGTAAACTGGCAAAATTACTATATACTACCTTAATAAAATTCTAAGTGCTCTGACCATATTAAA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e manLeu1.NW_012099388v1       213259 5249 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=2283.000000
s hg38.chr15_KI270850v1_alt    120335 54 +    430880 ----ACTTaca-cacacacacacacacacacacacacacacacacacacacacacaGCT
s gorGor5.CYUI01015946v1        43441 54 -    378907 ----ACTTAAAacacacacacacacacacacacacacacac-cacacacacacaGAGCT
i gorGor5.CYUI01015946v1    I 3 C 0
s nomLeu3.chr6               25565008 19 - 121039945 ----ACTTAAAATACATACATG------------------------------------T
i nomLeu3.chr6              I 3 C 0
s chlSab2.chr29              20389878 45 -  24206276 ----ACTTAAAATacacacacacacacacaca----------cacacacacacacaGTT
i chlSab2.chr29             I 3 C 0
s saiBol1.JH378276            2797510 21 +   3282555 ----ACTTAAAATGTGCACACAGGG----------------------------------
i saiBol1.JH378276          I 3 C 0
s otoGar3.GL873530           29600152 35 +  36342412 AATCACTAAAAATATATATACAGAACTATATACTA------------------------
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3029339 26 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       753128 24 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e manLeu1.NW_012099388v1       213259 5249 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=44276.000000
s hg38.chr15_KI270850v1_alt    120389 24 +    430880 TTCCCTGCTAATCATTTTAC-----AACA
s gorGor5.CYUI01015946v1        43495 24 -    378907 TTCCCTGCTAATCATTTTAC-----AACA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25565027 29 - 121039945 TTCCCTGTTAATCATTTTACAAATAAACA
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20389923 21 -  24206276 TTCCC---TAATCATTTTAC-----AACT
i chlSab2.chr29             C 0 I 4
s saiBol1.JH378276            2797531 29 +   3282555 TTCCCTGTTAATCACTTTATAAATAGACA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       753152 29 +   1024465 TTCCCTGCTAATCATTTTATAAATAGACA
i cebCap1.NW_016107979v1    I 24 C 0
s aotNan1.NW_018511953v1      3029365 29 +   3745603 TTCCCTGCTAATCATTTTATAAATAGACA
i aotNan1.NW_018511953v1    I 26 C 0
s otoGar3.GL873530           29600187 29 +  36342412 TTCCTTGCTAATCATTTTACAAGTAAGCA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e manLeu1.NW_012099388v1       213259 5249 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=180129.000000
s hg38.chr15_KI270850v1_alt    120413 77 +    430880 ACCAAGTAGCTAACCCAGAGCCCACAAAAGCAGAGTCAAAATTCTAACACTTGGTAAAATAAAAATGCACATATATC-
s gorGor5.CYUI01015946v1        43519 77 -    378907 ACCAAGTAGCTAACCCAGAGCCCACAAAAGCAGAGTAAAAATTCTAACACTTGGTAAAATAAAAATGCACATATATC-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25565056 77 - 121039945 ACCAAGTAGCTAACCTAGAGCCCACAAAAGCAGAGTAAAAATTCTAACACTTGTTGAAATAAAAATGCTTATATACC-
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20389948 77 -  24206276 ACCAATAAGCTAACCCAGAGCCCACAAAAGCAGAGTAAAAATTCTATCTCTTGATAAAATAAAAATGCACATATATC-
i chlSab2.chr29             I 4 C 0
s manLeu1.NW_012099388v1       218508 77 -    383355 ACCAAGTAGCAAACCCAGAGCCCACAAAAGCAGAGTAAAAATTCTAACACTCAGACAGATAAAAATGCACATGTATC-
i manLeu1.NW_012099388v1    I 5249 I 721
s saiBol1.JH378276            2797560 76 +   3282555 ACCAAGTAAATAAGGTAGAGCCGACAAAAGCAGAGGAAAAATTCTAACACTTA-TAAAATAAAAATGTTTATATACC-
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       753181 77 +   1024465 ACCAAGCAGCTAAGGTAGAGCCGACAAAAGCAGAGGAAAAATTCTAACACTTGTTAAAATAAAAATGTTTATATACC-
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3029394 77 +   3745603 ACCAAGTAGCTAAGGTAGAGCCCACAAAAGCAGAGGAAAAATTCTAACACTTGTTAAAATAAAAATGTTTATATACC-
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530           29600216 78 +  36342412 ATCAAGTACCTAACCCAGAACCCACAAAATCTGAGTAAAAGTATTAACACTTGGTTAAAGAAAAATGCATAAATATAC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=-2279.000000
s hg38.chr15_KI270850v1_alt    120490 11 +    430880 CCTGTCACCTA
s gorGor5.CYUI01015946v1        43596 11 -    378907 CCTGTCATCTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25565133  8 - 121039945 CGTGATA---A
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20390025 11 -  24206276 CCTGTCATCTA
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276            2797636  8 +   3282555 CATGATAA---
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       753258  8 +   1024465 CATGATAA---
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3029471  8 +   3745603 CATGACAA---
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530           29600294 11 +  36342412 CCTATGATTTA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e manLeu1.NW_012099388v1       218585 721 -    383355 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=448248.000000
s hg38.chr15_KI270850v1_alt    120501 174 +    430880 AAAAAAAATGCTTACGTATTCAAAGACAG----C-AATTGTAGCTACTGAGAACATCAT--TGTAAGCAAACTGAGGCAGAGAAAACAAACGTGCTGATGAGGATTTGAAACACCTAAGCTGCAGAAACCCACTGGATGGTTTCCTAGGTTCCGAGTTGGCATTATCTTTCAGAACGATCT
s gorGor5.CYUI01015946v1        43607 176 -    378907 AAAAAAA-TGCTTAAGTATTCAAAGACAGACAGC-AATTGTAGCTACTGACAACATCAT--TGTAAGCAAACTGAGGCAGAGAAAACAAACGTGCTGATGAGGATT-GAAACACCTAAGCTGCAGAAACCCACTGGATGGTTTCCTAGGTTCCTAGTTGGCATTATCTTTCAGAACGATCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25565141 173 - 121039945 AAAGAAAATGCTTAAGTATTCAAACACAAGCAGCAAATTACAGCTACTGAGAACATCGT--TGTAAGCAAACTGAGGCACAGAA---AAAGGCGCTGATGAGGATCTGAACCACCTAAGCTGCAGAAACCCACTGGATGGTTTCCTAGGTTCCAAGTTGGGATTATCTTTCAGA---ATCT
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20390036 178 -  24206276 AAAAAAAATGCTTAAGTATTCAAAGACAGACAGC-AATTATAGCTACTGAGAACATCAT--TGTAAGCAAACTAAGGCAGAGAAAACAAAGGTGCTGATGAGGATTTGAACCACCTAACCTGCAGAAACCCACTAGATGGTTTCCTAGGTTCCAAGTTGGCATTATCTTTCAGAACGATCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       219306 178 -    383355 AAAAAAAATGCTTAAGTATTCAAAGATAGACAGC-AATTACAGCTACTGAGAACATCAT--TGTAAGCAAACTGAGGCAGAGAAAACAAAGGTGCTGATGAGGATTTGAACCACCTAAGCTGCAGAAACCCACTAGATGGTTTCCTAGGTTTCAAGTTGGCATTATCTTTCAGAACGATTT
i manLeu1.NW_012099388v1    I 721 C 0
s saiBol1.JH378276            2797644 179 +   3282555 AAAGAAAATGCTTCAGTAGTCAAACACAAGCAGCAAATTTCAGCTACTGAGAAAATGAT--TATAAGCAAACCGAGGCAGAGAAAACAAATGTGCTGATGACGATTTGAACCACCTAAGCTGCAGAAACCCACTGGATGGTTTCCTGGGTTCCAAGTTGGCATTATCTTTCAGAACGATCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       753266 179 +   1024465 AAAGAAAATGCTTCGGTAGTCAAACACAAGCAGCAAATTTCAGCTACTGAGAACACCATTATATAAGCAAA--GAAGTAGAGAAAACAAATGTGCTGATGACGATTTGAACCACCTAAGCTGCAGAAACCCTCTGTATGGTTTCCTAGGTTCCGAGTTGGCATTATCTTTCAGAACGATCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3029479 179 +   3745603 AAAGAAAATGCTTCAGTAATCAAACACAAGCAGCAAATTTCAGCTACTGAGAACATCAT--TATAAGCAAACTGAGGCAGAGAAAACAAATGTGCTGATGACGATATGAACCACCTAAGCTGCAGAAACCCACTGGATGGTTTCCTAGGTTCCGAGTTGGCATTATCTTTCAGAACGATCT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530           29600305 166 +  36342412 --AAAAAATGCTTAAGTATCCAAACACAGGCAACAAATTACAGCTACTCAGAACATCAC--TCTAAGTGAACTGAGGCAGAGAAAACAAAGGTGCTAGAGAGGATTTGAACCACCTGAGCTGCAGAAACCCACTGGATAGTTTCTTTGGTTCTGAG-----------TCTCAGAATGATCA
i otoGar3.GL873530          C 0 I 240
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=228608.000000
s hg38.chr15_KI270850v1_alt    120675 86 +    430880 TCTAGAAGAGATCACATAACACTGTTACAAAGGATCTGGAGAAAGGGACCCTGGCTTCATCACTCTGGCTCTCCAGTCATGCTTTA
s gorGor5.CYUI01015946v1        43783 86 -    378907 TCTAGAAGAGATCACATAACACTGTTACAAAGGATCTGGAGAAAGGGACCCTGGCTTCATCACTGTGGCTCTCCAGTCATGCTTTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25565314 86 - 121039945 TCTAGAAGAGATCACATAACACTGTTACAAAGGATCTGGAAAAAGGGACCCCTGCTTTATCACTCCGGCTCTCCAGTCATGCTTTA
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20390214 86 -  24206276 TCTAGAAAAGATTACATAACACTGTTACAAAGGATCTGGGGAAAGGGATGCTGGCTTTATCACTCTGGCTCTCCAGTCATGCTTTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       219484 86 -    383355 TCTAGAAGAGATCACATAACACTGTTACAAAGGATCTGGAGAAAGGGACCCTGGCTTTACCACTCTGGCTCTCCAGGCATGCTTTA
i manLeu1.NW_012099388v1    C 0 C 0
s saiBol1.JH378276            2797823 84 +   3282555 TCTACAAGAGATCACATGACACTGTTACAAAGGATCTGGAAT--GGGACCCTTGCTTTATCACTCTGGCTCTCCAGTCATGCTTTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       753445 85 +   1024465 TCTAGAAGAGAACACATAACACTGTTACAAAGGATCTGGAAT-GGGGACCCTTGCTTTAAGACTGTGGCTCTCCAGTCATGCTTTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3029658 85 +   3745603 TCTAGAAGAGATCACATAACACTGTTACAAAGGATCTGGAAT-GGGGACCCTTGCTTTATCACTCCAGTTCTCCAGTCATGCTTTA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530           29600711 86 +  36342412 tctaGAAGAAATCACTTAACACTGTTAGAAAGGACTTGGGGAAAAGGACCCATCCTTTATCACTCTGGCTCTCCAGGAGTGCTTTA
i otoGar3.GL873530          I 240 I 1362
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=5348.000000
s hg38.chr15_KI270850v1_alt    120761 2 +    430880 CA
s gorGor5.CYUI01015946v1        43869 2 -    378907 CA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25565400 2 - 121039945 CA
i nomLeu3.chr6              C 0 I 1396
s chlSab2.chr29              20390300 2 -  24206276 CA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       219570 2 -    383355 CA
i manLeu1.NW_012099388v1    C 0 I 1
s saiBol1.JH378276            2797907 2 +   3282555 CA
i saiBol1.JH378276          C 0 I 2403
s cebCap1.NW_016107979v1       753530 2 +   1024465 CA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3029743 2 +   3745603 CA
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530           29600797 1362 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=8852.000000
s hg38.chr15_KI270850v1_alt    120763 3 +    430880 TTT
s gorGor5.CYUI01015946v1        43871 3 -    378907 TTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25566798 3 - 121039945 TTT
i nomLeu3.chr6              I 1396 C 0
s chlSab2.chr29              20390302 3 -  24206276 TTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       219573 3 -    383355 TTT
i manLeu1.NW_012099388v1    I 1 C 0
s saiBol1.JH378276            2800312 3 +   3282555 TTT
i saiBol1.JH378276          I 2403 C 0
s cebCap1.NW_016107979v1       753532 3 +   1024465 TTT
i cebCap1.NW_016107979v1    C 0 I 1861
s aotNan1.NW_018511953v1      3029745 3 +   3745603 TTT
i aotNan1.NW_018511953v1    C 0 I 3511
s otoGar3.GL873530           29602159 3 +  36342412 TTC
i otoGar3.GL873530          I 1362 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=82799.000000
s hg38.chr15_KI270850v1_alt    120766 65 +    430880 TCACTTCTTACACTCTCTTTCATAGGAAGTCAATTTACAGGCTTCCA--CCAAGCCCTTAAGTGACG
s gorGor5.CYUI01015946v1        43874 64 -    378907 TCACTTCTTACACTCTCTTTCATAGGAAGTCAATTTACAGGCCTCCA--TCAAGCCCTTA-GAGACC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25566801 62 - 121039945 TCACTTCTTACACTC----TCATATGAAGTCAATTTACAGACTTCCATCTCAAGCCCTTA-GAGCCA
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20390305 64 -  24206276 TCACTTCTTACACTCTCTTTCATATGAAGTCAATTTACAGACTTCCA--TCAAGCCCTTA-GAGACC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       219576 64 -    383355 TCACTTCTTACACTCTCTTTCATATGAAGTTAATTTACAGACTTCCA--TCAAGCCCTTA-GAGACC
i manLeu1.NW_012099388v1    C 0 C 0
s saiBol1.JH378276            2800315 60 +   3282555 TCAATTCTTATACTC--TTTCATATTAAGTCAATTTACAGACT--CA--TCAAGCCCTTA-TTGACC
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530           29602162 64 +  36342412 CCATTTCTTACACTGTCTTTCATATGAAGTCAATGTACAGATTTCCT--ATAAGCCTTCA-ATGACC
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3029748 3511 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       753535 1861 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=637677.000000
s hg38.chr15_KI270850v1_alt    120831 401 +    430880 TTTTTGTACTATCCATGACAAGTTCTTGATGTTATGTCTGCACTTCTGACAAATTCTTAGCAGTTAACTTACTAGGCAGTTAAGG-TTTTTGTTC-AAGCACAATATAGCTAGAATAGGGTCATACATTCAATAAAACAAATATTTACCAAGCATTTATTGAGTGGAAGAT--------------------------------------------AAAAAGCACAAAGC-----------ATAATTATA--AAACATT--------------------------------------------------------------------------------------------------------------------------------------------------------CTCCCCTGCCACCA--TAAAAAT-----------------TTTTTTAAAGCCTT-----------------ACAGAATATAGCAT-----AACATAACCAAAGCAAAAAT----AGGACTAAAGAGGGGAGGAAGGGGAAATATCAGCATGAATTAAATATGACCCAGAAGAGCCTT----GATGGTCAGAC--ACGTAAAGACAAATTGGGT------AGGGTTAGGGGGTGGCTGTCAGGGGCACATTCTACAGGGG
s gorGor5.CYUI01015946v1        43938 401 -    378907 TTTTTGTACTATCCGTGACAAGTTCTTGATGTTATGTCTGCACTTTTGACAAATTCTTAGCAGTTAACTTACAAGGCAGTTAAGA-TTTTTTTTG-AAGCACAATATAGCCAGAATAGGGTAATACATTCAATAAAACAAATATTTACCAAGCATTTATTGAGTGGAAGAT--------------------------------------------AAAAAGCACAAAGC-----------ATAATTATA--AAACATT--------------------------------------------------------------------------------------------------------------------------------------------------------CTCCCCTGCCACCA--TAAAAAT-----------------TTTTTTAAAGCCTT-----------------ACAGAATACAGCAT-----AACATAACCAAAGCAAAAAT----AGGACTAAAGAGGGGAGGAAGGGGAAATATCAGCATGAATTAAATATGACCCAGAAGAGCCTT----GATGGTCAGAC--ACGTAAAGACAAATTGGGT------AGGGTTAGGCGGTGGCTGTCAGGGGCACATTCTACAGGGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25566863 405 - 121039945 TTTTTGTAC-ATCCATGACAAGTTATTGATGTTATCTCTGCACTTTTGACAAATTCTTAGCAGTTAACTTACAAGGCAGTTAAGA-TTTTTGTTC-AAATACAATACAGCTAGAATAGCGCCATATACT--------CAAATATTTATGAAGCATTTATTGAGTGGAAG----------------------------------------------AAAAAGCACAAAGC-----------ATAATTATA--AAATATT--------------------------------------------------------------------------------------------------------------------------------------------------------CTCCCCTACCACCA--TAAAAAG---------------AAAAACTTAAAGGCTT-----------------ACAGAATACAGCATAAGAAAACATGACCAAAGCAAAAATAGTAAGGACTAAAGACGGGAGGAAGGGGAAATAACAGCATGAACTAAATATGAGCCAGAAGAGCCTTGAGGGATGGTCAGGC--ATATAAAGACAAATGGGTT------AGGGTTAAGGGGTGGAGGTCAGGGGCACATTCTACAGGGG
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20390369 407 -  24206276 TTTTTGTACTATCCATGACGAGTTCTTGATGTTATCTCTGCACTTTTGACACATTCTTAGCAGTTAACTTACAAGGCAGTTAAGA-TTTTTGTTC-AAGCACAATATAGTGACAATAGGATCACACACTTAATAAAACAAATATTTACCAAGCATTTATTCAGTGGAAGAT--------------------------------------------GAAAAGCACAAAGT-----------ATAATTATA--AAATATT--------------------------------------------------------------------------------------------------------------------------------------------------------CTCCCCTGCCACCATTTAAAAAA-----------------AAGTAAAAAGGCTT-----------------ACAGAATACAGCAT-----AACATGACCAAAGCAAAAATAGTAAGGACTAAAGAGGGGAGGAAGGTGACATATCAGCATGAACAAAATATGACCCAGAAGAGCCTT----GGTGGTCAGAC--ATGTAAAGACAAATTGGGT------AGGGTTAGGGGGCGGCTGTCAGGGGCACATTCTACAGGGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       219640 401 -    383355 TTTTTGTACTATCCATGACAAGTTCTTGATGTTATCTCTGCATTTTTGACAAAT-----GCAGTTAATTTACAAGGCAGTTAATATTTTTTGTTC-AAGCACAATATAGCTAGAATAGGGTCATATACTCAATAAAACAAATATTTACCAAGCATTTACTGAATGGAAGAT--------------------------------------------AAAAAGCACAAAGC-----------ATAATTACA--AAATATT--------------------------------------------------------------------------------------------------------------------------------------------------------CTCCACTGCCACCA--TAAAAAA-----------------ATTTTTAAAGGCTT-----------------ACAGAATACAGCAT-----AACATGAACAAAGCAAAACTAGTAAGGACTAAAGAGTGGAGGAAGGGGATATATCAGCATGAACTAAATATGACCCAGAAGAGCCTT----GATGGTCAGAC--AGGTAAAGACAAATTGGGT------AGGGTTAGGGCGTGGCTGTCAGGAGCACATTCTACAGGGG
i manLeu1.NW_012099388v1    C 0 C 0
s saiBol1.JH378276            2800375 398 +   3282555 TTTTTGTACTACCCATGACAAGTTCTTGATCTTATCTCTAAACTTTTGACAAATTCTTAGCAGTTAACTTACAAGGCAGTTAAGA-TTTTTGTTC-AAATACAATATAGCTAGAATAGGGTCACAT---------AATAAATATTTACGAAGCATTTATTGAGTGGAAGAT--------------------------------------------AAAAAGAACAAAGC-----------ATAATTAT-------ATT--------------------------------------------------------------------------------------------------------------------------------------------------------CTCCCCTGCCATCA--TAAAAAA-------------------AAATTAAGGCTT-----------------ACAGAATACTGCATAAGAAAACATAACCAACCCAAAAAGAGTAATGTCTCAAGAGGGGAAGAAGGGGAAATATCAGCATGAACTGAGTAGGACCCAGAAGAGCCTTGAGGGATGATCAGGC--ATATAAAGACAAATTGGGT------AGGGTTAAGGGGTGGGGCTCAGGGACACATTCTACAAGGG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       755396 404 +   1024465 TTTTTGTACTACCCATGACAAGTTCTTGATCTTATCTCTAAACTTTTGACAAATTCTTAGCAGTTAACTTACAAGGTAGCTAAGA-TTTTTGTTC-AAATACAATATACCTAGAATAGGGTCATATACTC-----AGTAAATATTTCCGAAGCATTTATTGAGTGGAAGAT--------------------------------------------AAAAGGCACGAAGC-----------ATAATTAT-------ATT--------------------------------------------------------------------------------------------------------------------------------------------------------CTCCCCTGCCACCA--TAAAAAA----------------ATTATTTTAAGGCTT-----------------ACAGAATACTGCATAAGAAAACATAACCAAACCAAAAATAGTAATATCTAAAGAGAG---GAAGGGGAATTATCAGCATGAACTGAATATGACCCAGAAGAGCCTTGAGGGATGATCAGGCATATATAAAGACAAATTGGGT------AGGGTTAAGGGGTGGGGGTCAGGGGCACATTCTACAAGGG
i cebCap1.NW_016107979v1    I 1861 I 2782
s otoGar3.GL873530           29602226 653 +  36342412 TTTTCATACTGTCCACGA-ATATTCTTGGTATTATCTCTGCAATTTTTACAACCTCTTGGCAGCAAACCCACAAGGTAGTTAAGA-TTTCTGTTCAAAGTAGAATATAGCTAGAATGAGGCCATATAGTCAGTAAaacaaatatttactgagcatttactgagtagaaggTGAATGAAAATTTTCTCCCTTGCTGCCATAAAAAAAACCTTTTAAAAAAGACATAAGGCTAAAAAACATAATAAATATaacaaaaattaaaaaataaaaataataaaagcaaataaaaataaaaaAGATACAAggctagatgtagtagctgacacctctaattctaagactttgagacgccaaggcaggaggatcacttgagatcaggagtgagagtagcctgggggtaacacagtgagactccatctctacaa--aaaaaaaaatttaattaaaaaaaaaaaaaAAAAGGCTTAAACACCCCAAACTGTAATAGAATACAGTAT-AAAAAACATAACCAAGATAGAAATAGTAAGGACTAAAG---GGAGCAAGGGGAAATATCAGCATGGACTACGTATGACCCAGAAAGGCCTTGAGGGATAGTCAGAT--TTG-AAAGATAGGCTGGGTCTGGTAAGGGTTAGAGAA-----GTTGGAGGCACATTCCTCATGGG
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3029748 3511 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=66855.000000
s hg38.chr15_KI270850v1_alt    121232 48 +    430880 AAAA---ACAGCTGATACAGAAGCCTGAAAGGAAAACCGGGCAGAGCACCT
s gorGor5.CYUI01015946v1        44339 48 -    378907 AAAA---ACAGCTGATACAGAAGCCTGAAAGGAAAAGCGGGCAGAGCACCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25567268 49 - 121039945 GAAA--TACAGCTGATACAGAAACCTGATAGGAAAAGCCGGCAGAGCACCT
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20390776 48 -  24206276 AAAA---ACAGCTGATACAGAAGCCTGAAAGGAAAAGCGGGCAGATCACCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       220041 48 -    383355 AAAA---ATGGCTGATACAGAAGCCTGAAAGGAAAAGTGGGCAGAGCACCT
i manLeu1.NW_012099388v1    C 0 C 0
s saiBol1.JH378276            2800773 51 +   3282555 GAAGCCTGTAGCTGACACAAAAGTCTGAAAGGAAAAGCCTGCAGAGTACCT
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530           29602879 48 +  36342412 AACA---ACAGCTGATACAGAAGCCTGAAAGAAAAAGGGGACACAGTGTCT
i otoGar3.GL873530          C 0 I 2577
e aotNan1.NW_018511953v1      3029748 3511 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       755800 2782 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=12949.000000
s hg38.chr15_KI270850v1_alt    121280 13 +    430880 GGACAGGACTCTT
s gorGor5.CYUI01015946v1        44387 13 -    378907 GGACAGGACTCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25567317 13 - 121039945 GTACAGGACTCTT
i nomLeu3.chr6              C 0 I 2398
s chlSab2.chr29              20390824 13 -  24206276 GTACAGGACTCTT
i chlSab2.chr29             C 0 I 1
s manLeu1.NW_012099388v1       220089 13 -    383355 GTACAGGACTGTT
i manLeu1.NW_012099388v1    C 0 I 1
s saiBol1.JH378276            2800824 13 +   3282555 CTATATGACTCTT
i saiBol1.JH378276          C 0 I 3015
e aotNan1.NW_018511953v1      3029748 3511 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       755800 2782 +   1024465 I
e otoGar3.GL873530           29602927 2577 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=20626.000000
s hg38.chr15_KI270850v1_alt    121293 14 +    430880 ACCTGCTGCATCCA
s gorGor5.CYUI01015946v1        44400 14 -    378907 ACCTGCTGCATCCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25569728 14 - 121039945 ACCTGCCGCATCGA
i nomLeu3.chr6              I 2398 C 0
s chlSab2.chr29              20390838 14 -  24206276 ACCTGCCGCATCCA
i chlSab2.chr29             I 1 C 0
s manLeu1.NW_012099388v1       220103 14 -    383355 ACCTGCCGCATCCA
i manLeu1.NW_012099388v1    I 1 C 0
s saiBol1.JH378276            2803852 14 +   3282555 ACCTGCCGCCTCGA
i saiBol1.JH378276          I 3015 I 1
s otoGar3.GL873530           29605504 14 +  36342412 ACCTGCCGCAGGGA
i otoGar3.GL873530          I 2577 C 0
e aotNan1.NW_018511953v1      3029748 3511 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       755800 2782 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=45898.000000
s hg38.chr15_KI270850v1_alt    121307 33 +    430880 GGGTACAATGCGCCTTTCCAGAACACAGCAGC---------G
s gorGor5.CYUI01015946v1        44414 33 -    378907 GGGTACAATGCGCCTTTCCAGAACACAGCAGC---------G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25569742 42 - 121039945 CGGTACTATGCGCCTTTCCAGAACACAGCAGCGCGCAGCCAG
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20390852 34 -  24206276 CGGTACAATGTGCCTTTCCAGAACATAGCGGCGG--------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       220117 42 -    383355 CGGTACAATGCGCCTTTCCAGAACACAGCAGCAGGCAGCCAG
i manLeu1.NW_012099388v1    C 0 C 0
s saiBol1.JH378276            2803867 33 +   3282555 GGGTCCGACGCGCCTTTTCAGCACCCGGCGGCG---------
i saiBol1.JH378276          I 1 I 9
s cebCap1.NW_016107979v1       758582 33 +   1024465 GGGTACTATGCGCCTTTTCAGAACACGGCAGCG---------
i cebCap1.NW_016107979v1    I 2782 I 13
s otoGar3.GL873530           29605518 33 +  36342412 AGGTACTATACGCCTTTCAGAAACACTTCAGCG---------
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3029748 3511 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=750.000000
s hg38.chr15_KI270850v1_alt    121340 5 +    430880 ACCCG
s gorGor5.CYUI01015946v1        44447 5 -    378907 ACCCG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25569784 5 - 121039945 GCCCG
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20390886 3 -  24206276 --CCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       220159 5 -    383355 GCCAG
i manLeu1.NW_012099388v1    C 0 C 0
s saiBol1.JH378276            2803909 5 +   3282555 GCCCG
i saiBol1.JH378276          I 9 C 0
s otoGar3.GL873530           29605551 1 +  36342412 --C--
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3029748 3511 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       758615 13 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=2116.000000
s hg38.chr15_KI270850v1_alt    121345 4 +    430880 GGGT
s gorGor5.CYUI01015946v1        44452 4 -    378907 GGAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25569789 4 - 121039945 GGGG
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20390889 4 -  24206276 GGGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       220164 4 -    383355 GGGG
i manLeu1.NW_012099388v1    C 0 C 0
s saiBol1.JH378276            2803914 3 +   3282555 -GGG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       758628 4 +   1024465 GGGC
i cebCap1.NW_016107979v1    I 13 C 0
s otoGar3.GL873530           29605552 3 +  36342412 GGA-
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3029748 3511 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=216529.000000
s hg38.chr15_KI270850v1_alt    121349 88 +    430880 AGAGGGATCGCTCAAACAGCACCAGAGGCTGCATTCCAA--CTTTTCCTCCATCAACGAGTCCGTTTTCATTGTTAGTTTCTCCTTAAAC
s gorGor5.CYUI01015946v1        44456 88 -    378907 AGAGAGATCGCTCAAACAGCACCAGAGGCTGCATTCCAA--CTTTTCCTCCATCAACGAGTCCGTTTTCATTGTTAGTTTCTCCTTAAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25569793 88 - 121039945 AGAGGGGTCGCTCAAACAGCACCAGAGTCCGCATTCCAA--CTTTTCCTCCGTCAACGAGTCCATTCTCATTGTCAGTTTCTCCTTAAAC
i nomLeu3.chr6              C 0 I 12
s chlSab2.chr29              20390893 88 -  24206276 ACAGGGATTGCTCAAACAGCACCAGAGGCTGCATTCCAA--CTTTTCCTCCCACAACAAGTCCGTTTTCATTGTTAGTTTCTCCTTAAAC
i chlSab2.chr29             C 0 I 12
s manLeu1.NW_012099388v1       220168 88 -    383355 AGAAGGATCGCTCAAACAGCACCAGAGGCTGCATTCCAA--CTTTTCCTTTGTCAATGAGTCCCTTTTCATTGTTAGTTTCTCCTTAAAC
i manLeu1.NW_012099388v1    C 0 I 6
s saiBol1.JH378276            2803917 88 +   3282555 ACGGCGCTCGCTCCCGCAGCACCGGGGGCCGCAGCCCCA--CTGTGCCTCCGCCGACGGGTCCGTTTTCACGGTCAGTTTCTCCTTAAAC
i saiBol1.JH378276          C 0 I 12
s cebCap1.NW_016107979v1       758632 88 +   1024465 AGAGGGGTCGCTCCAACAGCACCAGAGGCCGCATTCCAA--CTTTGCCTCCGTCAACGAGTCCGTTTTCATTGTCAGTTTCTCCTTAAAC
i cebCap1.NW_016107979v1    C 0 I 12
s aotNan1.NW_018511953v1      3033259 88 +   3745603 AGAGGGGTCGCTCCAACAGCACCAGGGGCCGCATTCCAA--CTTTTCCTCCGTCAACGAGTCCGTTTTCGTTGTCAGTTTCTCCTTAAAC
i aotNan1.NW_018511953v1    I 3511 I 272
s otoGar3.GL873530           29605555 90 +  36342412 AAAGGGATAAATCATACAGCACTAGGGACTGCACTGGAAACTTTTTTTTCCTTAAATGAGTGCGTTTTCAATGTTAGTTTGTCCTTAAAC
i otoGar3.GL873530          C 0 I 6
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=93485.000000
s hg38.chr15_KI270850v1_alt    121437 54 +    430880 ACGATTGGCTGAACATGCGGGAACAAGGAAAACCTGACT---GAAGAACGAGGCATT
s gorGor5.CYUI01015946v1        44544 54 -    378907 ACGATTGGCTGAACATGCGGGAACAAGGAAAACCTGACT---GAAGAACGAGGCATT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25569893 54 - 121039945 ACAACTGGCTGAACAAGCGGGAACAACGAAAATCCGATT---GAAAACTGAGGCGTT
i nomLeu3.chr6              I 12 C 0
s chlSab2.chr29              20390993 54 -  24206276 ACGATTGGCTGAACACGAGAGAACAAGGAAAACCTGACT---GAAGAATGAGGCCTT
i chlSab2.chr29             I 12 C 0
s manLeu1.NW_012099388v1       220262 54 -    383355 ACAATTGGCTGAACACGCGGGAACAAGGAAATCCTGACT---GAAGAATGAGGTCTT
i manLeu1.NW_012099388v1    I 6 C 0
s saiBol1.JH378276            2804017 54 +   3282555 AGAATTGGCTCCACAAGCGGGAACGAGGAAAACCCGACC---GAAGGAGGCGGCGTT
i saiBol1.JH378276          I 12 C 0
s cebCap1.NW_016107979v1       758732 54 +   1024465 AGAATTGGCTAAACAAGCGGGAACGAGGAAAACCTGACC---GAAGAATGAGGCGTT
i cebCap1.NW_016107979v1    I 12 C 0
s otoGar3.GL873530           29605651 57 +  36342412 AGAACTGGTTCAACAACAGGCAACGAGGGAAACCTGACTAAAGAGGAATGAAGCGTT
i otoGar3.GL873530          I 6 C 0
e aotNan1.NW_018511953v1      3033347 272 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=14619.000000
s hg38.chr15_KI270850v1_alt    121491 11 +    430880 -TAAGCTTAAGG
s gorGor5.CYUI01015946v1        44598 11 -    378907 -TAAGCTTAAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20391047 11 -  24206276 -TAAACTTAAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       220316 11 -    383355 -TAAACTTAAGG
i manLeu1.NW_012099388v1    C 0 C 0
s saiBol1.JH378276            2804071 11 +   3282555 -GAAACTTCAGG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       758786 11 +   1024465 -AAAACTTAAGG
i cebCap1.NW_016107979v1    C 0 I 274
s otoGar3.GL873530           29605708 12 +  36342412 TAAAACTTAAAA
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3033347 272 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25569947  0 - 121039945 C

a score=476.000000
s hg38.chr15_KI270850v1_alt    121502 1 +    430880 G
s chlSab2.chr29              20391058 1 -  24206276 G
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       220327 1 -    383355 G
i manLeu1.NW_012099388v1    C 0 C 0
s saiBol1.JH378276            2804082 1 +   3282555 A
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530           29605720 1 +  36342412 G
i otoGar3.GL873530          C 0 I 36
e aotNan1.NW_018511953v1      3033347 272 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       758797 274 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25569947 0 - 121039945 C
e gorGor5.CYUI01015946v1        44609 0 -    378907 C

a score=2000.000000
s hg38.chr15_KI270850v1_alt    121503 2 +    430880 CC
s gorGor5.CYUI01015946v1        44609 2 -    378907 CC
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20391059 2 -  24206276 CC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       220328 2 -    383355 CC
i manLeu1.NW_012099388v1    C 0 C 0
s saiBol1.JH378276            2804083 2 +   3282555 CC
i saiBol1.JH378276          C 0 I 24108
e aotNan1.NW_018511953v1      3033347 272 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       758797 274 +   1024465 I
e otoGar3.GL873530           29605721 36 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25569947 0 - 121039945 C

a score=39663.000000
s hg38.chr15_KI270850v1_alt    121505 79 +    430880 TT--GGATctgggcgcggtggctcaggcctgtaatcccagaactctgggaggcagagatgggtcatttgaggtcaggagtt
s gorGor5.CYUI01015946v1        44611 79 -    378907 TT--GGATccgggcgcggtggctcaggcctgtaatcccagaactctgggaggcagagaggggtcatttgaggtcaggagtt
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20391061 81 -  24206276 TTTGGGGTccgggcgcggtggctcaggcctgtaatcccagaactttgggaggcagaggtgggtcatttgaggtcaggagtt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012099388v1       220330 79 -    383355 TT--GGGTccaggcgcggtggctcacacctgtaatcccagcactttgggaggcagaggtgggtcatttgaggtcaggagtt
i manLeu1.NW_012099388v1    C 0 N 0
e aotNan1.NW_018511953v1      3033347 272 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       758797 274 +   1024465 I
e otoGar3.GL873530           29605721 36 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25569947  0 - 121039945 C
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=160323.000000
s hg38.chr15_KI270850v1_alt    121584 375 +    430880 cgagaccagcctggccaacatgatgaaaccccatctctactaaacaacacaaaacttagccaggcgtggtggcgggcgcccgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccacagactgtcaagagatggaggctgcagtatgccgagatcgctccactgcactccagcctgggcgacagagtgaga----------------------------ctccatctcaa------------gaagcgcctgccaccatgcccggctaatttttgtat-ttttagtagagacagggttttaccatgttggccaggctggtctagaactcctgacctcaggagatccagctgcctcagtctcccatagtgctgggattacaggaatgag-cactgcgcccggcc
s gorGor5.CYUI01015946v1        44690 375 -    378907 cgagaccagcctggccaacatgatgaaaccccgtctctactaaacaacacaaaagttagccaggcgtggtggcgggcgcccgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccacggactgtcaagagatggaggctgcagtataccgagatcgccccactgcactccagcctggacgacagagtgaga----------------------------ctccatctcaa------------caaGCGTCTgccaccatgcccggctaatttttgtat-ttttagtagagacagggttttaccatgttggccaggctgctctagaactcctgacctcaggagatccagctgcctcagtctcccatagtgctgggattacaggaatgag-cactgcgcccggcc
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20391142 374 -  24206276 cgagaccagcctggccaacatggtgaaaccctgtctctactaaacaacacaaaagttagccaggcgtggtggcgggcgcctgtaatcccagctactcgggaggctgaggcagcagaatcgcttgaagccatggactgtcaagggacagaggctgcagtaagccaagatcgccccactgcactgcagcctgggcgacagagtgaga----------------------------ctccatctcaa------------caagcgcctcccatcatg-tcggttaatttttgtat-ttttagtagagacagggttttaccatgttggcctggctggtctagaactcctgacctcaggtgatccacccgcctcaacctcccaaagtgctgggattacaggaatgag-cactgcgcccggcc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1596476 384 +   1678425 cgagaccagcctggccaacacggtgaaaccctgtctctattaaa-aacacaaaagttagccaggtgtggtggtgggcgcctgtaatcccagctactcgggaggctgaagcaggagaatcgctttaact--------------------------------actgagatcgcgccactgcactccagcctgggcgacagagtgagactgtcgcaaaaaaaaaaaaaaaaaaaTTCTAcctctcaagtagctgggattaaggcgcctgacaccatgcccggctaatttttgtatgttttagtagagatggggtttcaccatcttggccaggctggtctccaactcctggcctcagatgatccgcccgccgtggcctcccaaagtgctgggattacgggcgtgagccaccgcgcccggtc
i manLeu1.NW_012107797v1    N 0 C 0
e aotNan1.NW_018511953v1      3033347 272 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       758797 274 +   1024465 I
e otoGar3.GL873530           29605721  36 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25569947   0 - 121039945 C
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=3926.000000
s hg38.chr15_KI270850v1_alt    121959 10 +    430880 ----AAAAAA-CCGA
s gorGor5.CYUI01015946v1        45065 10 -    378907 ----AAAAAA-CCGA
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20391516 10 -  24206276 ----aaAAAA-CCGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1596860 11 +   1678425 ----AAAAAAGCCGA
i manLeu1.NW_012107797v1    C 0 C 0
s otoGar3.GL873530           29605757 10 +  36342412 aagaaaaaaa-----
i otoGar3.GL873530          I 36 C 0
e aotNan1.NW_018511953v1      3033347 272 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       758797 274 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25569947  0 - 121039945 C
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=61771.000000
s hg38.chr15_KI270850v1_alt    121969 79 +    430880 AAATCTTAAAGGCCTTTCCCCTTCCCTCACTGGGCTCAAACAACAGCGGGA-----GCCGCCCTGCCACGCCCCGTCGCGGTCC
s gorGor5.CYUI01015946v1        45075 79 -    378907 AAATCTTAAAGGCCTTTCCCCTTCCCTCACTGGGCTCAAACAACAGCGGGA-----GCCGCCCTGCCACGCCCCGTCGCGGTCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25569947 84 - 121039945 AAAACTTAAGGGCCGTTTCCCTTGCCCGCCTGGGCTCAAACAACAGCCGGAGCTgcgccgccccgcccagccccgccccgGTCC
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20391526 79 -  24206276 AAATCTTAAAGGCCTTTCCCCTTCCCCGCCTGGGCTCAAACAACAGCCAGA-----GCCTACCTGTCATGCCCCGTCGCTGTTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1596871 78 +   1678425 AAATCTTAAAGGCCTTTTCCCTTCTGCGCCTGGGCTCAAACGAC-GCCAGA-----GCCGCCCTGCCCCGCCCTGTCACGGTCC
i manLeu1.NW_012107797v1    C 0 I 55
s otoGar3.GL873530           29605767 66 +  36342412 GGAACTTAAAGGCCTTTTGCCTTCCCCGCCCAGGCTCAAACA---GCCGGA----------CACGACGCGCCTGGCCGC-----
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3033347 272 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       758797 274 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=18256.000000
s hg38.chr15_KI270850v1_alt    122048 57 +    430880 AGGGGAGCAGGCTAGCTGACTGAGGGCGATCATGG-G-CCCCAACAGGTCTGCGGGCGA
s gorGor5.CYUI01015946v1        45154 57 -    378907 AGGGGAGCAGGCTAGCTGACTGAGGGAGATCATGG-G-CCCCAAAAGGGCTGCGGGCGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25570031 52 - 121039945 C-GGGAGCAG----GCCGGCTGAGGGCGGCCATGG-A-CCCCACCAGGGATTGGGCCGC
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20391605 56 -  24206276 --CGGAGCAGGTCGGCTGACTGAGGGCGACCATGG-GCCCCCGAAAGGGCTGCGAGAGA
i chlSab2.chr29             C 0 C 0
s otoGar3.GL873530           29605833 46 +  36342412 ------------CGGGCGGCTGCGGGCGGCCATGGCG-ACCCGGAGAGGCTGGGGCCAC
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3033347 272 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       758797 274 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e manLeu1.NW_012107797v1      1596949 55 +   1678425 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=72577.000000
s hg38.chr15_KI270850v1_alt    122105 79 +    430880 CGCGGGCTCCCACCTCAGGGCGCAGCGACTGGGG-CGAGAGGTGCCGGCAGCCCCCAAGCCAGCCCCGCGGCAAGGAGCC
s gorGor5.CYUI01015946v1        45211 79 -    378907 CGCGGGCTCCCACCTCAGGGCGCAGCGACTGGGG-CGAGAGGTGCCGGCAGCCCCCAAGCCAGCCCCGCGGCAAGGAGCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25570083 79 - 121039945 CGCGGACTCCCACCTCGGGGCTAGGAGACGGGGACCGAGATGGGCCAGAAGCCCCCAAGCAAGCCCCGC-GCGAGAAGCC
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20391661 78 -  24206276 CGCGGGTTCCCACCTCGGGAAGCGGCCACCAGGG-CGAGAGGTGCCAGCATCCCCCAAGCCAGCCCCGC-GCAAGGAGCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1597004 79 +   1678425 CGCGGGCTCCCACCTGGGGGAGCGGCGACCGGGGCCAATTCGGGCCGGCAGCCCCCAAGCCAGCCCCGC-GTGAGGAGCC
i manLeu1.NW_012107797v1    I 55 C 0
s otoGar3.GL873530           29605879 79 +  36342412 GGCGGTCTCCCACCCCGGGACGCGGCGACGGGGGCCGAGAGGGACCCACAGCCCCAAAGCCAGCCTCGC-GCGAAGAGCC
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3033347 272 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       758797 274 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=61709.000000
s hg38.chr15_KI270850v1_alt    122184 44 +    430880 AGAGAGACGCGCCCTCCCCCTCCTCCCACGCAAGCCTCA-CACAG
s gorGor5.CYUI01015946v1        45290 44 -    378907 AGAGAGACGCGCCCTCCCCCTCCTCCCACGCAAGCCTCA-CGCAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25570162 45 - 121039945 GAAAAGACGCGCCCTCCGCCTCCTCCCCCCCAAGCCTAAGCGCAG
i nomLeu3.chr6              C 0 I 13
s chlSab2.chr29              20391739 44 -  24206276 AGAGAGACGCACCCTCCGCCTCCTCCTACCCAAGCCTCC-CGCAG
i chlSab2.chr29             C 0 I 11
s manLeu1.NW_012107797v1      1597083 41 +   1678425 GGAGACACGCGCCCTCTG---CCTCCCATCCAAGCCTCG-CGCAG
i manLeu1.NW_012107797v1    C 0 I 11
s aotNan1.NW_018511953v1      3033619 44 +   3745603 AGAGACACGCGCCCTCCGCCCCCTCCCACCCAAGCCTCG-CACAG
i aotNan1.NW_018511953v1    I 272 I 49
s otoGar3.GL873530           29605958 44 +  36342412 GGAGAGACGCGTCCTCCACCTCCTCCCACCCAAGCCTCG-CGCAG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       758797 274 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=15095.000000
s hg38.chr15_KI270850v1_alt    122228 22 +    430880 -------------CGGGGCGGGCCAGACGCGGGAG
s gorGor5.CYUI01015946v1        45334 22 -    378907 -------------CGGGGTGGGCCAGTCGCGGGAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25570220 22 - 121039945 -------------TGGGCTGGGCCAGTCGCGGGGG
i nomLeu3.chr6              I 13 I 1
s chlSab2.chr29              20391794 22 -  24206276 -------------TGGGCCAGGCCAGTCGCAGGAG
i chlSab2.chr29             I 11 C 0
s manLeu1.NW_012107797v1      1597135 22 +   1678425 -------------AGGGCCGGGCTAGTCGCGGGAG
i manLeu1.NW_012107797v1    I 11 C 0
s otoGar3.GL873530           29606002 34 +  36342412 TCCCAGCGGGGCCTGGGGCGGGCCACGAGCCGGG-
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3033663 49 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       758797 274 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=51849.000000
s hg38.chr15_KI270850v1_alt    122250 44 +    430880 AAAGGGGCGCGCTCGCCCCGCCTGGGGAACC-GGGGCCTCTCCCG
s gorGor5.CYUI01015946v1        45356 44 -    378907 AAAGGGGCGCGCTCGCCCCGCCCGGGGAACC-GGGGCCTCTCCCG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25570243 44 - 121039945 AAAGGGGCGGGCCTGCCCCGCCCGGGAAGCC-GGAGCCTCTCCGG
i nomLeu3.chr6              I 1 C 0
s chlSab2.chr29              20391816 44 -  24206276 AAAGGGGCGCGTTGGCCCAGCCCGGGGAACC-GGGGCCTCTCCGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1597157 29 +   1678425 AAAGAGG---------------CAGGGAACC-GGAGCCTCTCCCA
i manLeu1.NW_012107797v1    C 0 C 0
s cebCap1.NW_016107979v1       759071 43 +   1024465 AAAGGGGCGGGCCTGCCCCGCCCGGGGAGCC-AGGGCCTCTCGG-
i cebCap1.NW_016107979v1    I 274 C 0
s otoGar3.GL873530           29606036 45 +  36342412 AAAggggcgggccggccccgcccggggagccgggggcccctccgg
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3033663 49 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=237792.000000
s hg38.chr15_KI270850v1_alt    122294 117 +    430880 GGCAGGCTCCCCTTTGTCCCGGGACTCTGGGCGCCTCCTCTCCGCCCTCGCCCTGGCCCGTGAGGCCGCCACTGGGCGCCTCACCGTGATGTTGCAGTGGAG-CGTGAGCTGTGGCGG
s gorGor5.CYUI01015946v1        45400 117 -    378907 GGCAGGTTCCCCTTTGTCCCGGGACTCTGGGCGCCTCCTCTCCGCCCTCGCCCTGCCGCGTGAGGCCGCCACTGGGCGCCTCACCGTGATGTTGCAGTGGAG-CGTGAGCTGCGGCGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25570287 117 - 121039945 GGCAGGCTCCCCTTTGTCCCGGGACTTGGAGCGCTCCCTCTCCGTCCTCGCCCTGCCCCATGGGGCCGCGGCCGGGCGCCTCACCGTGATGTTGCAGTGGAG-CGTGAGTGGCGGCGG
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20391860 115 -  24206276 GGCAGGCTCCCCTTTGTCCCGGGACTCCAGGAGCCTCCTCTCCGCCCTCGCCCTGACCCGCGAGCTCGCGGCTGGGCGCCTCATCATGATGTTGCAGTGGAG-CGTGAGCTGCGGC--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1597186 118 +   1678425 GGCAGGCTCCCCTTTGTCCCGGGACTCCGGGCGCCCCCTCTCCGCCTTCGCCCTGCCCCGCGAGGCCGCTGCCGGGCGCCTCACCCTGATATTGCAGTGGAGCCCTGAGCGGCGGCTG
i manLeu1.NW_012107797v1    C 0 C 0
s cebCap1.NW_016107979v1       759114 117 +   1024465 GGCCGGCTCCCCTTTGTCCCGGGACTCGGGGCGCCCCCTCTCCGCCCTGGCCCTGCCCCCCGGGGCCGCGGCCAGGCGCCTCACCGTGATGTTGCAGTGCAG-CGTGAgcggcggcgg
i cebCap1.NW_016107979v1    C 0 I 80
s aotNan1.NW_018511953v1      3033712 112 +   3745603 GGCAGGCTCCCCTTTGTCCCGGGACGCGGGGCGCCCCCTCTCCGCCCTGGCCCTG-----CGGGGTCGCGGCCGGGCGCCTCACCGTGATGTTGCAGTGGAG-CGTGAgcggcggcgg
i aotNan1.NW_018511953v1    I 49 I 80
s otoGar3.GL873530           29606081 111 +  36342412 ggcAGGCTCCCCTTTGTCCC-GGACTCAGGGCGCCCCCTTTccgcccccgcccgc-----cggggccgcggccgggcgccTCACCGTGATGTTGCAGTGGAG-TGTGAgcggcggcgg
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=1185.000000
s hg38.chr15_KI270850v1_alt    122411 2 +    430880 GG
s gorGor5.CYUI01015946v1        45517 2 -    378907 CG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25570404 2 - 121039945 CG
i nomLeu3.chr6              C 0 I 78
s chlSab2.chr29              20391975 1 -  24206276 -G
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1597304 1 +   1678425 -G
i manLeu1.NW_012107797v1    C 0 C 0
s otoGar3.GL873530           29606192 2 +  36342412 cg
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3033824 80 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       759231 80 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747 0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=254980.000000
s hg38.chr15_KI270850v1_alt    122413 141 +    430880 ---------------------------------------------------------------------------------------GCTCCTGGTTCTTGTGGAAGATAGA--GGCCAACAACCTCAGCTTGGCCTTGAACCCTCACACGGACATTTTACTCTCACCTCTGGCGGGAGGGGCGCGGAAGGT-GAGCCCGT-CGGGAGCCGCTGTCACGGCCGCAACCA-CCC
s gorGor5.CYUI01015946v1        45519 141 -    378907 ---------------------------------------------------------------------------------------GCTCCTGGTTCTTGTGGAAGATAGA--CGCCAACAACTTCAGCTTGGCCTTGAACCCTCACACGGACATTTTACTCTCACCTCTGGCGGGAGGGGCGCGGAAGGT-GAGCCCGT-CGGGAGCCGCTGTCACGGCCGCAACCA-CCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25570484 143 - 121039945 ---------------------------------------------------------------------------------------GCTCGTGGTTCTTGTCGAAGATGGA--CGCCAGGAACTTCAGCTCGGCCTTGAGCCCCGACACGGACATCTTCCCCTCATCTCCAGCGGGAGGGGCGCGGAAGGg-gagccgggaccggagccgccgtcacggccgcgaccgcccc
i nomLeu3.chr6              I 78 C 0
s chlSab2.chr29              20391976 142 -  24206276 ---------------------------------------------------------------------------------------GCTCCTGGTTCTTGTGGAAGATAGA--GGCTAGCAACTTCAGCTTGGCCTTGAACCGTGACACAGACATCTTACCCTCATTTCCGGCGGGAGGGGCGCGGAAGGT-GAGCCGAT-CCGGAGCCCCTGTCATGGCCAGGACCACCCG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1597305 145 +   1678425 ---------------------------------------------------------------------------------------ACTCCTGGTTCTTGTGGAAGATAGAACAGCCAGCAACTTCAGTTTGGCCTTGAACCCTGTCACCGACATCTTCCTCTCCTGTCCAGCGAGAGGGGCTCGGAAGGGAGAGCCTGT-CGGGGGCAGCTGTCATTGCCGCGACCACCCG
i manLeu1.NW_012107797v1    C 0 C 0
s cebCap1.NW_016107979v1       759311 142 +   1024465 ---------------------------------------------------------------------------------------GCTCGTGGTTCTTGTCGAAGATGGA--CGCCAGGAACTTCAGCTCGGCCTTGAGCCCTGACACGGACATCTTCCCTTCATCTCCGGCGGGAGGGGCGCGGAAGGG-GAGCCGGGCCCGGAGCCGCCGTCACGGCCGCGACCGCCC-
i cebCap1.NW_016107979v1    I 80 I 52
s aotNan1.NW_018511953v1      3033904 142 +   3745603 ---------------------------------------------------------------------------------------GCTCGTGGTTCTTGTGGAAGATGGA--CGCCAGGAACTTCAGCTCGGCCTTGAGCCCTGACACGGACATCTTCCCCTCATCTCCGGCGGGAGGGGCGCGGAAGGG-GAGCCGGGCCCGGAGCCGCCGTCACGGCCGCGACCGCCC-
i aotNan1.NW_018511953v1    I 80 I 52
s otoGar3.GL873530           29606194 230 +  36342412 gcgagcgggggccgcctggcgacgccggcggaggcACCAGGAACTGGCAATGCAGCTCGTCCAGCTTCCAGCTGACGATGCGGAATCGCTCGTGGTTCTTGTCGAAGATGGA--CGCCAGGAACTTCAGCTCGGCCTTGAGCCCTGACACGGACATCTTCCCCTCATCTCCAGCAGGAGGGGTGCGGAAGGG-GAgcccggcccggagccgccgtcacggccgcgaccgcccc
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747   0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=37242.000000
s hg38.chr15_KI270850v1_alt    122554 70 +    430880 GCGGGACC--TCTCGGCGGCGCTCTCCCAGCTCCGCCTCTCCCTGCTGCCTCAACTCTATTCGGAGTAGGGC
s gorGor5.CYUI01015946v1        45660 70 -    378907 GCGGGACC--TCTCGGCGGCGCTCTCCCAGCTCCGCCTCTCCCTGCTGCCTCAACTCTAGTCGGAGTAGGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25570627 51 - 121039945 gcggggccggcctgggccgCGCTCTCGCGGCTCCGCCTCGTC---------------------GAGCGCGGC
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              20392118 70 -  24206276 GCAGGACA--GCCCGGCGGAGCTCTGGCCGCTCTGCCTCTCCCCACTGCCTCCACTGCAGTCGGAGCACGGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1597450 60 +   1678425 G------------CGACCGAGCTCTGGAGGCTCCGCCTCTCCCAGCCGCCTCAGCCTTTGTGGGAGCGCGGA
i manLeu1.NW_012107797v1    C 0 C 0
s otoGar3.GL873530           29606424 72 +  36342412 gcggggccggcccgggccgcgctctcgcggctccgcctccccccgccgctgcgacccgcgtcggcgcgcggc
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3034046 52 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       759453 52 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=198291.000000
s hg38.chr15_KI270850v1_alt    122624 95 +    430880 TGGAAAATGGCAAGGGGCACCGAGGCCTCTGCGGGGAGCTGTGTGGCGGCCT-GGGCGGCTGCTCCCCTTGTAACAGACTCCACCGACAGGAGGCG
s gorGor5.CYUI01015946v1        45730 95 -    378907 TGGAAAATGGCAAGGGGCACCGAGGCCTCTGCGGGGAGCTGTGTGGCGGCCT-GGGCGGCTGCTCCCCTTGTAACAGACTCCACCGACAGGAGGCG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25570678 95 - 121039945 TGGAAAATGGCGAGGGGCGCGGAAGCCTCGGCGGGTAGCTGTGTGGCGGCCT-GGGTGGCTGCTCCCTTTGTAACCGACTCCAGCGGCAGGAGGCG
i nomLeu3.chr6              C 0 I 22002
s chlSab2.chr29              20392188 95 -  24206276 TGGAAAATGGTAAGGGGCACAGAGGTCTCTGCGGGGAGCTGTGTGGCGGCCT-GGGCGGCTGCTCCCCTTGTAACAGACTCCACCGACAGGAAGCG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1597510 96 +   1678425 TGGAAAACGGCAAGGGGCACAGAGGCCTCCGCGGGAAGCTGTGTGGCGGCCTGGGGGGGCTGCTCCCTTTGTAACCAATTCCACCAACAGGAGGGG
i manLeu1.NW_012107797v1    C 0 C 0
s cebCap1.NW_016107979v1       759505 95 +   1024465 TGGAAAATGGCGAGGGGCGCGGAAGCCTCGGCGGGTGGCTGTGAGGCGGACT-GGGCTGCTGCTCCCTTTGTAACCCGCTCCAGCGGCAGGAGGCG
i cebCap1.NW_016107979v1    I 52 I 1
s aotNan1.NW_018511953v1      3034098 95 +   3745603 TGGAAAATGGCGAGGGGCGCGGAAGCCTCGGCGGGTAGCTGTGAGGCGGCCT-GGGCTGCTGCTCCCTTTGTAACCCACTGCAGCGGCAGGAGGCG
i aotNan1.NW_018511953v1    I 52 I 1
s otoGar3.GL873530           29606496 95 +  36342412 TGAAAAATGGCGAGGGGCACGGAGGCCTCGGCGGGCAGCAGTGCAGTGGCCT-AGGCGGCCGCTCCCTTTGTAACCGACTCCACCGGCAGGAGGCG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=58427.000000
s hg38.chr15_KI270850v1_alt    122719 49 +    430880 -CTGCTCCTGTCAAGCCGCAGCTTAAAAGGGCAACAGCACCACAGTCCCC
s gorGor5.CYUI01015946v1        45825 49 -    378907 -CTGCTCCTGTCAAGCCGCAGCTTAAAAGGGCAACAGCACCACAGCCCCC
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr29              20392283 49 -  24206276 -CGGCTCCTGTCAAGCCGCAGCTTAAAAGGGCAACAGCACCACCGCCCCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1597606 49 +   1678425 -CGGCTCCTGTCAAGCCGCAGCTTAAAAGGGCAACAGCACCACCGTCCCC
i manLeu1.NW_012107797v1    C 0 C 0
s cebCap1.NW_016107979v1       759601 40 +   1024465 -CGGCC---------CGGCGGCTTAAAAGGGCAACAGCGACGCCGCCCCC
i cebCap1.NW_016107979v1    I 1 C 0
s aotNan1.NW_018511953v1      3034194 40 +   3745603 -CGGCC---------CGGCGGCTTAAAAGGGCAACAGCGACGCCGCCCCC
i aotNan1.NW_018511953v1    I 1 C 0
s otoGar3.GL873530           29606591 41 +  36342412 GCGGCC---------CGCCGGCTTAAAAGGGTAACTGCGACGCCGCCCCC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7               65372747  0 + 171882078 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25570773 22002 - 121039945 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=68573.000000
s hg38.chr15_KI270850v1_alt    122768 34 +    430880 GCTACCGCCTGGGAAAGGGCTGCCCCTACCCCGC
s gorGor5.CYUI01015946v1        45874 33 -    378907 GCTACCGCCTGGGAAAGGGCTGcccccaccc-gc
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106527963 33 - 171882078 gttaccgcctgGGAAA-GGCTGTCACCATCCCGC
i macFas5.chr7              I 18636 C 0
s chlSab2.chr29              20392332 34 -  24206276 TCTACCGCCTGGGAAAGGGCTGCCCCCACCTTAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1597655 34 +   1678425 GCCATCGCCTCTGAAAGGGCTGcccccaccctgc
i manLeu1.NW_012107797v1    C 0 C 0
s cebCap1.NW_016107979v1       759641 34 +   1024465 GCCACCGCCTGGGAAAGGGCTGCCCCCACCCCGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3034234 34 +   3745603 GCCACCGCCTGGGAAAGGGCTGCccccaccccgc
i aotNan1.NW_018511953v1    C 0 I 97
s otoGar3.GL873530           29606632 34 +  36342412 GTTACCGCCTGGGAAAGGGCTGCCCCCACTCCGC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25570773 22002 - 121039945 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=9622.000000
s hg38.chr15_KI270850v1_alt    122802 9 +    430880 TCCCGTCCC
s gorGor5.CYUI01015946v1        45907 9 -    378907 tcccgtccc
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106527996 8 - 171882078 C-CTGTCCC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20392366 9 -  24206276 CCCCTTCCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1597689 9 +   1678425 caccgtccc
i manLeu1.NW_012107797v1    C 0 I 60
s cebCap1.NW_016107979v1       759675 9 +   1024465 CCCCGTCCT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530           29606666 9 +  36342412 CCCCATCCC
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3034268 97 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25570773 22002 - 121039945 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=2402.000000
s hg38.chr15_KI270850v1_alt    122811 9 +    430880 TCTCGCCCC
s gorGor5.CYUI01015946v1        45916 9 -    378907 tctcgcccc
i gorGor5.CYUI01015946v1    C 0 C 0
s cebCap1.NW_016107979v1       759684 9 +   1024465 CCTCGCCCC
i cebCap1.NW_016107979v1    C 0 I 61
e aotNan1.NW_018511953v1      3034268 97 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530           29606675 0 +  36342412 C
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e manLeu1.NW_012107797v1      1597698 60 +   1678425 I
e chlSab2.chr29              20392375 0 -  24206276 C
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e macFas5.chr7              106528004 0 - 171882078 C
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25570773 22002 - 121039945 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=19665.000000
s hg38.chr15_KI270850v1_alt    122820 68 +    430880 TCACACCCGTCGCCCCTCACCCCTCA-ACCCGCGCGCCCCCTGCGCACCCGTTTCGGCGGCTGCAG-GAG
s gorGor5.CYUI01015946v1        45925 68 -    378907 tcacacccgtcacccctcacccctca-acccGCGCGCCCCCTGCGCACTCATTTCGGCGGCTGCAG-GAG
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106528004 63 - 171882078 -------TCTCACCCCTCACCCCTCATCCCTGCGCGCCCCGTGCACACCCATTTCGGCTGGTGCAACGAG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20392375 56 -  24206276 -------TCTCACTCCTTATC------CCCCGCGCTCCCAGTGCCCACCCATTTCCGCAAGTGCAA-GAG
i chlSab2.chr29             C 0 C 0
s otoGar3.GL873530           29606675 45 +  36342412 ------------CTCCCCAT-------cccggcgcaccccgcgcgcccccgtgccggcgcgtgc------
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3034268 97 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       759693 61 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e manLeu1.NW_012107797v1      1597698 60 +   1678425 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25570773 22002 - 121039945 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=13919.000000
s hg38.chr15_KI270850v1_alt    122888 20 +    430880 -TCCAGAGCATGCGCGCGCTT
s gorGor5.CYUI01015946v1        45993 20 -    378907 -TCCAGAGCATGTGCGCGCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106528067 20 - 171882078 -ACCAGAGCATGTGCGCGCTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20392431 20 -  24206276 -TCCGGAGCATGAGTGCGCTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1597758 20 +   1678425 -TCCAGAGCGTGAGCGGGCTG
i manLeu1.NW_012107797v1    I 60 C 0
s otoGar3.GL873530           29606720 19 +  36342412 tcgtggcgcgcgagcgcgc--
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3034268 97 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       759693 61 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25570773 22002 - 121039945 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=71200.000000
s hg38.chr15_KI270850v1_alt    122908 32 +    430880 CCGGCTGCCCCCTCCTCGCCTTGACCCAGCAC
s gorGor5.CYUI01015946v1        46013 32 -    378907 CCGGCTGCCCCCTCCTCGCCTTGACCCAGCAC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106528087 32 - 171882078 CCGGCTGCCCCCTCCTCGCCTTGACCCAGCAC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20392451 32 -  24206276 CTGGATGCCCCCTCCTAGCCTTGACTCAGCAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1597778 32 +   1678425 CCTGCTGCCCCCTTCTCCCCTTGACCCAGCAC
i manLeu1.NW_012107797v1    C 0 I 148
s cebCap1.NW_016107979v1       759754 32 +   1024465 CCGGCCGCCCCCTCCTCGCCTTGACCCAGCTC
i cebCap1.NW_016107979v1    I 61 I 5
s aotNan1.NW_018511953v1      3034365 32 +   3745603 CCGGCCGCCCCCTCCTCGCCTTGACCCAGCTC
i aotNan1.NW_018511953v1    I 97 I 5
s otoGar3.GL873530           29606739 32 +  36342412 ccggccgcccccTCCTCGTCGTGACCCAGCCC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25570773 22002 - 121039945 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=55826.000000
s hg38.chr15_KI270850v1_alt    122940 42 +    430880 -----TGCTGGACCCATCTGGTCCGTTCTTCACACTCGCGGACTGGA
s gorGor5.CYUI01015946v1        46045 42 -    378907 -----TGTTGGACCCATCTGGTTCGTTCTTCACACTCGCGGACTGGA
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106528119 40 - 171882078 -----TGCTGGACCCATGTGGTCCGTTCCT--CACTCACGGACTGGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20392483 42 -  24206276 -----TGCTGGACCCATCTGGTCCGTTCCTGGCACTGGCGGACTGGA
i chlSab2.chr29             C 0 C 0
s cebCap1.NW_016107979v1       759791 42 +   1024465 -----TGCCCGACCCATCTGCTCCGTTCCTCGCACGCGCGGACTGGA
i cebCap1.NW_016107979v1    I 5 I 21787
s aotNan1.NW_018511953v1      3034402 42 +   3745603 -----TGCCCGACCCATCTGCTCCGTTCCTCTCACCCGCGGACTGGA
i aotNan1.NW_018511953v1    I 5 I 25871
s otoGar3.GL873530           29606771 47 +  36342412 CCTTCAGCCCGGCCCATCTGCTCAGCTCCTCGCCCCAGCGGACTGGA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e manLeu1.NW_012107797v1      1597810 148 +   1678425 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25570773 22002 - 121039945 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=8628.000000
s hg38.chr15_KI270850v1_alt    122982 10 +    430880 GGCTCCGGGC
s gorGor5.CYUI01015946v1        46087 10 -    378907 GGCTCCGGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106528159 10 - 171882078 GGCTCTGGGC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20392525 10 -  24206276 GGCTCCGGGC
i chlSab2.chr29             C 0 C 0
s otoGar3.GL873530           29606818 10 +  36342412 GGCTCGGGGC
i otoGar3.GL873530          C 0 I 17893
e aotNan1.NW_018511953v1      3034444 25871 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       759833 21787 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e manLeu1.NW_012107797v1      1597810 148 +   1678425 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25570773 22002 - 121039945 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=16546.000000
s hg38.chr15_KI270850v1_alt    122992 50 +    430880 AGCACAACCACCAACTC------GTGTGTGTGTTGGG-GTG-GGGGTGGGGGGCAGAA
s gorGor5.CYUI01015946v1        46097 50 -    378907 AGCACAACCACCAACTC------GTGTGTGTGTTGGG-GTG-GGGGTGGGGGGCAGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106528169 47 - 171882078 AGCACAACCAGAAACTC------CGGTGTGTGTTAAG-----GGGGGGCAGGGCACAA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20392535 58 -  24206276 AGCACAACCACCAACTCGTGTGTTCGTGTGTGTTGGGGGTGCGGGGTGGGGGGCACAA
i chlSab2.chr29             C 0 C 0
e aotNan1.NW_018511953v1      3034444 25871 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       759833 21787 +   1024465 I
e otoGar3.GL873530           29606828 17893 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e manLeu1.NW_012107797v1      1597810 148 +   1678425 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e nomLeu3.chr6               25570773 22002 - 121039945 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=24083.000000
s hg38.chr15_KI270850v1_alt    123042 38 +    430880 AACCACCAACTCgtgtgtgtgtgtgtgtgtgtgtg----------------tgt
s gorGor5.CYUI01015946v1        46147 38 -    378907 AACCACCAACCCgtgtgtgtgtgtgtgtgtgtgtg----------------tgt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25592775 35 - 121039945 AGCCACCAACTTG---GGgtgtgtgtgtgtgtgtg----------------tgt
i nomLeu3.chr6              I 22002 C 0
s macFas5.chr7              106528216 37 - 171882078 AACCACCAAC-tgtgtgtgtgtgtgtgtgtgtgtg----------------tgt
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20392593 54 -  24206276 AACCACTAACgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatgt
i chlSab2.chr29             C 0 C 0
e aotNan1.NW_018511953v1      3034444 25871 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       759833 21787 +   1024465 I
e otoGar3.GL873530           29606828 17893 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e manLeu1.NW_012107797v1      1597810 148 +   1678425 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2804085 24108 +   3282555 I

a score=2865.000000
s hg38.chr15_KI270850v1_alt    123080 2 +    430880 gt
s gorGor5.CYUI01015946v1        46185 2 -    378907 gt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25592810 2 - 121039945 gt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106528253 2 - 171882078 gt
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20392647 2 -  24206276 gt
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276            2828193 2 +   3282555 gt
i saiBol1.JH378276          I 24108 C 0
e aotNan1.NW_018511953v1      3034444 25871 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       759833 21787 +   1024465 I
e otoGar3.GL873530           29606828 17893 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e manLeu1.NW_012107797v1      1597810 148 +   1678425 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=2100.000000
s hg38.chr15_KI270850v1_alt    123082 1 +    430880 g
s gorGor5.CYUI01015946v1        46187 1 -    378907 g
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25592812 1 - 121039945 g
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106528255 1 - 171882078 g
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20392649 1 -  24206276 g
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276            2828195 1 +   3282555 g
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       781620 1 +   1024465 g
i cebCap1.NW_016107979v1    I 21787 C 0
e aotNan1.NW_018511953v1      3034444 25871 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530           29606828 17893 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e manLeu1.NW_012107797v1      1597810 148 +   1678425 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=12327.000000
s hg38.chr15_KI270850v1_alt    123083 5 +    430880 tgtgt
s gorGor5.CYUI01015946v1        46188 5 -    378907 tgtgt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25592813 5 - 121039945 tgtgt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106528256 5 - 171882078 tgtgt
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20392650 5 -  24206276 tgtgt
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276            2828196 5 +   3282555 tgtgt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       781621 5 +   1024465 tgtgt
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530           29624721 5 +  36342412 TATGT
i otoGar3.GL873530          I 17893 C 0
e aotNan1.NW_018511953v1      3034444 25871 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e manLeu1.NW_012107797v1      1597810 148 +   1678425 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=112475.000000
s hg38.chr15_KI270850v1_alt    123088 54 +    430880 gtgtgtgtgtgt------------CTCCCAAGGGAAC--AGCACTGCTGAGTTCAGGC----TATCAGCTCA
s gorGor5.CYUI01015946v1        46193 62 -    378907 gtgtgtgtgtgtgtgtg----tgtCTCCCAAGGGAAC--AGCACTGCTGAGTTCAGGC----TATCAGCTCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25592818 60 - 121039945 gtgtgtgtgtgt------------CTCCCAAGGGAACAGAGCATTGCTGAGTTCAGGCTGATTATTAGCTCG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106528261 70 - 171882078 gtgtgtgtCTGTCTGTCTGTCTGTCTCCCAAGGGAAC--AGCAGTGCTGAGTTCAGCTTGAGTATTAACTCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20392655 70 -  24206276 gtgtgtgtgtgtgtgtgtgtCTGTCTCCCAAGGGAAC--AGCACTGCTGAGTTCAGGCTAAGTATTACCTCA
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276            2828201 60 +   3282555 gtgtgtgtgtgt------------gtCCCAAGGGAACAGAGCACTGCTGAGTTAAGGCTGATGATTAGTTAG
i saiBol1.JH378276          C 0 I 4
s cebCap1.NW_016107979v1       781626 60 +   1024465 gtgtgtgtgtgt------------gtcccaagggaacagagcgctactgagttcaggctgacgattagttag
i cebCap1.NW_016107979v1    C 0 I 4
s aotNan1.NW_018511953v1      3060315 60 +   3745603 gtgtgtgtgtgt------------gtcccaagggaacagagcgctgctgagttcaggctgatgattagttag
i aotNan1.NW_018511953v1    I 25871 I 4
s otoGar3.GL873530           29624726 58 +  36342412 --GTGCAAATGT------------GTCCTGCAGGAGCCGGGCGCTGCTGAGTTCAGGCTGGTTATCAGCTCG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e manLeu1.NW_012107797v1      1597810 148 +   1678425 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=174865.000000
s hg38.chr15_KI270850v1_alt    123142 56 +    430880 TGGACTGTCAGCAAAATACAGTCACAAGAAGG------------------------------CTATGTGCTGTTTTGTCTCTTGCA
s gorGor5.CYUI01015946v1        46255 56 -    378907 TGGACTgtcagcaaaatacagtcacaagaagg------------------------------ctatgtgctgttttgtctcttgca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25592878 56 - 121039945 TGGACTGTCAGCAAAATACATTCACAAGAAGG------------------------------CTATGTGCTGATTTGTCTTTTGCA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106528331 56 - 171882078 TGGACTGTCAGCAAAATACAGTCACCAAAAGA------------------------------CTATGGGCTGTTTTGTCTTTTGCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20392725 86 -  24206276 TGGACTGTAAGCAAAATACACTCGCAAGAAGGCTATGTAAGCAAAATACACTCGCAAGAAGGCTATGTGCTGTTTTGTCTTTTGCA
i chlSab2.chr29             C 0 I 17
s manLeu1.NW_012107797v1      1597958 55 +   1678425 TGGACTGTCAGCAAAATACAGTCACAAGAAGG-------------------------------TATATGCTGTTTTGTCTTTTGCA
i manLeu1.NW_012107797v1    I 148 I 30
s saiBol1.JH378276            2828265 56 +   3282555 TGGATTGTCAGCAAAACACATTCACAAGAAAG------------------------------CTATGTGCTGTTTTGTCTTTTGCA
i saiBol1.JH378276          I 4 C 0
s cebCap1.NW_016107979v1       781690 56 +   1024465 tggattgtcagcaaaacacattcacaagaaag------------------------------ctatgtgctgttttgtcttttgca
i cebCap1.NW_016107979v1    I 4 C 0
s aotNan1.NW_018511953v1      3060379 56 +   3745603 tgtattgtcagcaaaacacattcacaagaagg------------------------------ctatgtgctgttttgtcttttgca
i aotNan1.NW_018511953v1    I 4 C 0
s otoGar3.GL873530           29624784 54 +  36342412 TGGTCTGCCAGCAGAATACATTCATAAGGGAG------------------------------C--GGTGCAGTTTTGTCTCTTGCA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=227363.000000
s hg38.chr15_KI270850v1_alt    123198 79 +    430880 GTGACGTCATGTTGCTCATGTTTTATGTTTTTCAGAGTTCATTAGTTTCTGTTTGCTCTCAGTTAATATCCAGCTCAAT
s gorGor5.CYUI01015946v1        46311 79 -    378907 gtgacgtcatgttgttcatgttttatgtttttcagagttcattagtttctgtttgctctcagttaatatccagctcaac
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25592934 79 - 121039945 GTGACGTCATGTTGCTCATGTTTTATGTTTTTCAGAGTTCATTAGTTTCTATTTGTTCTCAGTTAATATCCAGCTCAAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106528387 79 - 171882078 GTGACATCATGTTGCTCACCTTTTATGTTTTTCAGAGTTCATTAGTTTCTGTTTGTTCTCAGTTAATATCCAGCTCAAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20392828 79 -  24206276 GTGACATCATGTCGCTCATGTTTTATGTTTTTCAGAGTTCATTAGTTTCTGTTTGTTCTCAGTTAATATCCAGCTCAAT
i chlSab2.chr29             I 17 C 0
s saiBol1.JH378276            2828321 79 +   3282555 GTGACGTCATGTGGCTCATGTTTTATGGTTTTCAGAGTTCATTAGTTTCCATTTGTTCTCGGTTAATATCCAGCTCAAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       781746 79 +   1024465 gtaacgtcatgttgctcatgttttatgtttttcagagttcattagtttctatttgttctccattaatatccagctcaac
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      3060435 77 +   3745603 gtga--tcatgttgctcatgttttatgtttttcagagttcattagtttctttttgttctcggttaatatccagctcaat
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530           29624838 79 +  36342412 GCGACATCGTGTTGATCATGTTTCATGGTTTTCAGAGTTCATCAGTTTTTATTTGCTCTCATTTAATATCCAGCTCCAT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e manLeu1.NW_012107797v1      1598013 30 +   1678425 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=640633.000000
s hg38.chr15_KI270850v1_alt    123277 228 +    430880 AGATTGTGTAAGTAGAATACCCCCAAACTGAAAGTCACCTACATAAAATATAGTGAAAAATATGTCACCCACTTAAACTATAGTTGAAAATATGTACTCATTAGTTTTGTGTAGCCAACACTGGataatgggtaagg----ggaaaggatcccagggctagactgcctgggttcaagttccgattt-----cctgctggctgtgaaatacttg----acagcgttcagcctctgtttcttt
s gorGor5.CYUI01015946v1        46390 232 -    378907 agattgtgtaagtagaatacccccaaactgaaagtcacctacataaaatatagtgaaaaatatgtcacccacttaaactatagttGAAAATATGTACTCATTAGTTTTGTGTAGCCAACACTGGataatgggtaaggaagggcacaggatcccagggctagactgcctgggttcaagttccgattt-----cctgctggctgtgAAATACTTG----ACAGCGTTCAGCCTCTGtttcttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25593013 232 - 121039945 AGATTGTGTAAGTGGAATACCCCCAAACTGAAATTCACCCACTTAAAATAAAGTGAAAAATATGTCACCCA-TTAAACTATAGTTGAAAATAGGTACCCATTAGTTCTGTGTAGCAAACACTGGataatgggtaagg----gcacaggatcccagggctagactgcctgggttcgagttctgacttagccacttgctggctgtgaaatacttg----atagctttaggcctcggttttttT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106528466 226 - 171882078 AGATTGTGTAAGTAGAATACTCCCAAACTGAAAGTCACCTACATAAAATATAGTGAAAAATATGTCACCCACTTAAAGTATAGTTGAAAACATGTACTCATTAGTTTTGTGTAGCCAACACTGGatactgggtaagg----gcacaggatcccagggctagacttcctgggttcaagttctgatttagccacttgctggctttgaaatgcttg----acaactttaagcctcaa-------
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20392907 233 -  24206276 AGATTGTGTAAGTAGAATACTCCCAAACTGGAAGTCACCTACATAAAATATAGTGAAAAATATGTCACGCACTTAAACTATAGTTGAAAACATGTACTCATTAGTTTTGTGTACCCGACACTGGATactgggtaagg----gcacgggatcccagggctagactgcctgggttcaagttccgattgagccacttgctggctttgaaatacttg----acagctttaagcctcagtttcttt
i chlSab2.chr29             C 0 I 1
s manLeu1.NW_012107797v1      1598043 226 +   1678425 AGATTGTGTAAGTAGAATACCCCCAAACTGAAAGTCACTTACATAAAGTATAGTGAAAAATATGTCATCCACTTAAACTATAGTTGAAGATGTGTATACATTAGTTTCGTGTAGCCAACATTAGatgacgggtaagg----gcacaggatcccgtggctagactgcctgggttcaagttccaacttagccacttgctggctgtgaaatacttg----acagctttaagcttcaa-------
i manLeu1.NW_012107797v1    I 30 C 0
s saiBol1.JH378276            2828400 231 +   3282555 AGACTGTGTAAGTAGAATACCCCCAAACTGAAAGTCACCCACTTAAAATATAGTT-AAAATATGTCACCCACT-----TATAGTTGAAAATGTGTACACATTAATTTTTTGTACCCAACACTGGataatgggtaagg----acacaggatcccggagcaagaccgcctgggtcccagttccaacttagccacttgcaggctgtgaaacgcttgAAATAGAGCTCTCAGCGTCCGtttcttt
i saiBol1.JH378276          C 0 I 46
s cebCap1.NW_016107979v1       781825 207 +   1024465 agactgtgtaagtagaatacccccaaactgaaagtcacccccttaaaa------------------------------tatagttgaaaatgtgtacatattaattttttgtagCCAACCCTGGataatgggtaagg----acacaggatcccagagcgagactacctgggttcaagttccaacttagccacttgcaagctgtgaaatgcttgaaatacagctttaagcctcagtttcttt
i cebCap1.NW_016107979v1    C 0 I 43
s aotNan1.NW_018511953v1      3060512 236 +   3745603 agactatgtaagtagaatacccccaaactgaaagtcacccacttaaaatatagtt-aaaaTATGTCACCCACTTAAAATACAGTTGAAAATGTGTACACATTAATTTTTTGTAGCCAACACTGGataatgggtaagg----gcacaggatcccagagcgagactgcctgggttcaagttccaacttagccacttgcaggctgtgaaatgcttgaaatacagctttaagcctcagtttcTtt
i aotNan1.NW_018511953v1    C 0 I 103
s otoGar3.GL873530           29624917 200 +  36342412 GGATTGCATCAGCAGATTACTCCCAAACTCAAATTTACCCACTTAAAA------------------------------TACAGTTGGAAATATGCGCATGTTCTTTTTgtgtggctgacactggat---ggctaagg----gcactggagcttggagctggactgcctgggttcaaatgctgactctgccagttgctacctgtgaaatactta----acagctttaaatctcactttattt
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=20413.000000
s hg38.chr15_KI270850v1_alt    123505  47 +    430880 tcttttttttttt-----------------------------------------------------------------tttttttAGCTTAATCCCAAATATGATAGTAAGT
s gorGor5.CYUI01015946v1        46622  44 -    378907 tctcttttttttt-----------------------------------------------------------------tttt---AGCTTAATCCCAAATGTGATAGTAAGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25593245 112 - 121039945 TGTTTTTTGTTTTTGTTTTCTCTCtctttctttctttcttctttctttctttctttcttttttcCTTCCTTCCTTCCCTTTTTTTTTCTTAATCCCAAAGGTGATAGtaagc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106528692  44 - 171882078 tttgttaattttt-----------------------------------------------------------------tTTT---AACTTAATCCCAAATGTGATAGTAAGT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20393141  47 -  24206276 TTtcttttttttt-----------------------------------------------------------------tttttttaaCTTAATCCCAAATGTGATAGTAAGT
i chlSab2.chr29             I 1 C 0
s manLeu1.NW_012107797v1      1598269  43 +   1678425 tttcttTTTTTTT-----------------------------------------------------------------TTCTTTAAATGTAATCCCAAATGTGAT----AGT
i manLeu1.NW_012107797v1    C 0 C 0
s saiBol1.JH378276            2828677  50 +   3282555 tctctttctctct----------------------------------------------------------ccctttctttctttTTCTTCATCCCAAAGGTGATAGC----
i saiBol1.JH378276          I 46 C 0
s cebCap1.NW_016107979v1       782075  50 +   1024465 tctctttctttct----------------------------------------------------------ctctttctttctttttctTCATCCCAAAGGTGATAGC----
i cebCap1.NW_016107979v1    I 43 C 0
s otoGar3.GL873530           29625117   1 +  36342412 -----------------------------------------------------------------------------------------------c----------------
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3060748 103 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=189469.000000
s hg38.chr15_KI270850v1_alt    123552 61 +    430880 CTCAGTTTCTTGATCTGAAAAACAGAAATTATTCAATGACAG--TCTATGTGAAAACTTTAAA
s gorGor5.CYUI01015946v1        46666 61 -    378907 CTCAGTTTCTTGATCTGAAAAACAGAAATTATTCAATGACAG--TCTATGTGAAAACTTTAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25593357 61 - 121039945 ctcagtttcttgatctgaaaaatagaaattatTCAATGAGAG--TCTATGTGAAAACTTTAAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106528736 59 - 171882078 CTCAGTTTCTTGATCTGAAAAACAGAAATTATTCAATGAGAG--TCTATGTAAAAACTTT--A
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20393188 54 -  24206276 CTCAGTTTCTTGATCTGAAAAACAGAAATTATTCAATGAGAG--TCTATGTGAAAA-------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1598312 54 +   1678425 CTCAGTTTCTTGATCTGAAAAACAGAAATTATTCAATCAGAG--TCTACATGAAAA-------
i manLeu1.NW_012107797v1    C 0 C 0
s saiBol1.JH378276            2828727 61 +   3282555 CTCAGTTTCTTGATTTGAAAAACAGAAATTATTCAATGAGAG--TCTATGTGAAAACTTTAAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       782125 61 +   1024465 CTCAGTTTCTTGATCTGAAAAATAGAAATTATTCAATGAGAG--TCTATGTGAAAACTTTAAA
i cebCap1.NW_016107979v1    C 0 I 3
s aotNan1.NW_018511953v1      3060851 61 +   3745603 CTCAGTTTCTTGATCTGAAAAATAGAAATTATTCAATGACAG--TCTATGTGAAAACTTTAAA
i aotNan1.NW_018511953v1    I 103 I 3
s otoGar3.GL873530           29625118 49 +  36342412 ------------atttgaaaaatagaaattattaaatgagagcacctaTATGAAAACTTTA--
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=-18338.000000
s hg38.chr15_KI270850v1_alt    123613 63 +    430880 GTTTTCAAAGCCACTATCTAGCTTAGGAAAGTCCTCAGCTTTAGGGGTTAAAGTTTTTAA-------------------AAC
s gorGor5.CYUI01015946v1        46727 63 -    378907 GTTTTCAAAGCCACTATCTAGCTTAGGGAAGTCCTCAGCTTTAGGGGTAAAAGTTTTTAA-------------------AAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25593418  3 - 121039945 GC-------------------------------------------------------------------------------A
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106528795 82 - 171882078 GTTTTTACAGCCACTATCTGGCTCAGGAAAGTCCTCAGCTTTAGGGGTTAAAGTTTTAAAGGCCACTTTAAAGTGTTTCAGC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20393242 54 -  24206276 ---------GCTACTATCTGGCTCAGGAAAGTCCTCAGCTTTAGCTGTTAAAGTTTTTAA-------------------AGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1598366 16 +   1678425 -----------------------------------------------CTAAAGTTTTTGA-------------------AGC
i manLeu1.NW_012107797v1    C 0 C 0
s saiBol1.JH378276            2828788  3 +   3282555 -------------------------------------------------ACA------------------------------
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530           29625167  6 +  36342412 -------------------------------CACACA---------------------------------------------
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3060912  3 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       782186  3 +   1024465 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=859471.000000
s hg38.chr15_KI270850v1_alt    123676 285 +    430880 CACTGCCTGGTTCAGGAAAGCCCTCAGCTGTAGCCATTATTAGCTATGATTATTATTGTGGTGGCTACACATACATTAATGAGGCAGGAAAATGCTCAAGGATAACAAGCAAGTATCCAGATTATCTCATCAGACCAAGACAGATGCATATGCATGCATGATCATGTTTTAGCTCAGAGCCATTTGTCTAAAAGGCTCTTGAACTCAGAGGCCCAGG-AGTATCAACTTTGCTTTGCAGTGGAGCCATCGCTTTTGTTAATCAATGAAATTGACATAATGCTCTTC
s gorGor5.CYUI01015946v1        46790 285 -    378907 CACTGCCTGGTTCAGGAAAGCCCTCAGCTGTAGCCATTATTAGCTATGATTATTATTGTGCTGGCTACACATGCATTAATGAGGCAGGAAAATGCTCAAGGATAACAACCAAGTATCCAGATTATCTCATCAGACCGAGACAGATGCATATGCGTGCATGCTCATGTTTTAGCTCAGAGCCATTTGTCTAAAAGGCTCTTGAACTCAGAGGCCCAGG-AGGATCAACTTTGCTTTGCAGTGGAGCCATCGCTTTTGTTAATCAATGAAATTGACATAACGCTCTTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25593421 286 - 121039945 CATTGCCTGGCTCAGGAAAGTCCTCAGCTTTAGCCATTATTAGCTATGATTACTATTGTGCTGGCTACATGTGCATTAATGAGGCAGGAAAATGCTCAAGGATAACAACCAAGTATTCAAACTATCTCATCAGACCGACAGAGATGCATGTGTGTGCATGCTCATGTTTCAGCTCAGAGCCCTTTGTCTAGAAGGCTCTTGAACTCAGAGGCCCAGGCAGTATCAACTTTACTTTGCAGTGGAGCCATCACTTTTGTTGATCAATGAAATTGACATACTGCttttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106528877 284 - 171882078 CACTGCCTGGCTCAGGAAAGCCCTCAGCTTTAGCCATTATTAGCAC--ATTATTGTTGTGCTGGCTACACATGCATTAATGAGGCAGGAAAATGCTCAAGGATAACAACTAAGCATCCAGATTATCTCATCAGACCGAGACAGATACATATACATGCATGCTCATGTTTTAGCTCAGAGCCATTTGTCTAAAAGGCTGTTGAACTCAGAGGCCCAGGCAGTATCTACTTTACTTTGTAGTGGAACCATCAGTTTTGTTAATCAATGAAATTGACATAACGCTCTTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20393296 286 -  24206276 CACTGCCTGGCTCAGGAAAGCCCTCAGCTTTAGCCCTTATTAGCTATGATTATTATTGTGCTGGCTACACATATATTAATGAGGCAGGAAAATGCTCAAGGATAACAACCAAGTGTCCAGATTATTTCATCAGATGGAGACAGATACATATGTGTGTATGCTCATGTTTTAGCTCAGAGCCATTTGTCTAAAACGCTTTTGAACTCAGAGGCCCAGGCAGTATCAACTTTACTTTGCAGTGGAGCCATCACTTTTGTTAATCAATGAAATTGACATAATGCTCTTt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1598382 284 +   1678425 CACTGCCTGGCTCAGGAAAGTCCTCAGCTTTAGCCGTTATTAGCTATGATTATTATTGTGTTGGCTACATGTGCATTCATGAGTCAGGAAAATGCTCAAGGATAACAACCAAGTATCCAAATTATCTCACCAGACTGAGAGAGATGC--ATGTGTGCATGCTCATGTTTCAGCTCAGAGCCTTTTGACTAGAAGGTTCTTGAACTCAGAGGCCCAAGCATTATCAACTTGACTTTGCAGTGGAGCCATCACTTTTGTTGATCAATAAAATTGACATAATGttcttt
i manLeu1.NW_012107797v1    C 0 C 0
s saiBol1.JH378276            2828791 273 +   3282555 CACTGCCTGGCCCGGGAAAGTCCTCAGCTTTAACCGTTATTAGCTATGATTACAAC-------------TGTGCATTAATGAGGCAAGAAAATGCTCAAGGATAACAAGCAAGTATCCCCATTAGCTCATCAGACCGAGGGAGATGCATACGCATGCATGCTCGGGTTTCAGCTCAAAGCCCTTTGTCTAGAAGGCTCTTGAACGCAGAGGTTCAGGCAGTATCAAGTTTACTTGGCAGTGGAGCCATCACTTTTGTTGATCAATGAAATTGACATACTGCTCTCC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       782189 284 +   1024465 CACTGCCTGGCTCAGGAAAGCCCTCAGCTTTAACCATTATTAGCTATGATTACAACTGTGCTGGCTACATGTGCATTAATGAGGCAAGAAAATGCTCAAGGATAACAACCAAGTATCCCTATTATCTCATCAGAC--AGAGAGATGCATACGTGTGCATGCTCGTGTTTCAGCTCGAAGCCCTTTGTCTACAAGGCTCTTGAACTCGGAGGCTCAGGCAGTATCAAGTTTACTTTGCAGTGGAGCCATCACTTTTGTTGATCAATGAAATTGACATGATGCTCTTC
i cebCap1.NW_016107979v1    I 3 C 0
s aotNan1.NW_018511953v1      3060915 286 +   3745603 CACTGCCTGGCTCAGGAAGGTCCTCAGCTTTAACTATTATTAGCTATGATTACAATTGTGCTGGCTACATGTGCATTAATGAGACAAGAAAATGCTCAAGGGTAACAACCAAGTATCCCCATTATCTCATCAGACCGAGAGAGATGCATACGTGTGCATGCTCGTGTTTCAGCTCAAAGCCCTTTGTCTAGAAGGCTCTTGAACTCAGAGGCTCAGGCAGTATCAAGTTTACTTTGCAGTGGAGCCATCACTTTTGTAGATCAATGAAATTGACAGAATGCTCTTC
i aotNan1.NW_018511953v1    I 3 I 10
s otoGar3.GL873530           29625173 260 +  36342412 CACTGCCTGGGTCAGGGAAGTCCTC------AACCGTTATTCCCTCTGATTGTCACCACGCCTACTGCGTGTGCGTTAATGAGCTAGGAAAATGCTCACACCCAACCACGGAGCGCTC--ATTTCCTCAGCACAT-AGGAGAGGCGCGTGTGTGCTTATACCTGTGCTTTAGTTCAAAGCC----------------CCTAAACTCAGAGGCCCAGGCAGTAGCCAGTT-ACTGCACAGTGGAGCCATCTTTTCTGCTGATGAATGAAATTGACATAATGCCCTCG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=-6161.000000
s hg38.chr15_KI270850v1_alt    123961 21 +    430880 TTTTTTTTTT----CCT--TTTTAGCA
s gorGor5.CYUI01015946v1        47075 24 -    378907 TTTTTTTTTTTT-TCCT--TTTTAGCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25593707 14 - 121039945 tttttttttttt-------------CA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106529161 14 - 171882078 TTTTC-----------T--TTTAAGCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20393582 25 -  24206276 tttttttttttttttct--ttttagCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1598666 21 +   1678425 tttttttttttt----t--ttttGGAA
i manLeu1.NW_012107797v1    C 0 C 0
s saiBol1.JH378276            2829064 12 +   3282555 ---------------CCGACCCCACCA
i saiBol1.JH378276          C 0 I 2
s cebCap1.NW_016107979v1       782473 10 +   1024465 ---------------CC--CCCTCCCA
i cebCap1.NW_016107979v1    C 0 I 2
s otoGar3.GL873530           29625433 18 +  36342412 ----TTTTTTTT---CT--TTTGAGCA
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1      3061201 10 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=938647.000000
s hg38.chr15_KI270850v1_alt    123982 285 +    430880 CCAACCATGTGCCTAGAGCTAAGTGTGTTAAGAAGAGCATGCTTCAAGTGGCTGGAGTGAGCAATTCAACTTGTGGAGGAATGAGAAGTGACAGTGTTGAGACAAGCAACATAAAACCCCAGGGTAAGGTAGAAATCACTGAAAGTCAGGCAAAGGAACTGGCGTCCAGTAATGAGTCAGG-----CTTTGCCAGCCTCTGGCCCTACAGATGGCTCTTTGCAGAGGAAAAAATTAAGCCAGGCCCGAGGGCACAGATCCTAAGGGAATGCTGGCAGCTCTAGGCTGTCT
s gorGor5.CYUI01015946v1        47099 285 -    378907 CCAACCATGTGCCTGGAGCTAACTGTGTTAAGAAGAGCATGCTTCAAGTGGCTGGAGTGAGCAATTCAACTTGTGGAGGAATGAGAAGTGACAGTGTTGAGACAAGCAACATAAAACCCCAGGGTAAGGTAGAAATCACTGAAAGTCAGGCAGAGGAACTGGCGTCCAGTAATGAGTCAGG-----CTTTGCCAGCCTCTGGCCCTACAGATGGCTCTTTGCAGAGGAAAAAATTAAGCCAGGCCCGAGGGCACAGATCCTAAGGGAATGCTGGCAGCTCTAGGCTGTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25593721 285 - 121039945 CCAACCATGTGCCTAGAGCTATCTGTGTCAAGAAGAACATGCTTCAGTTGGCTGGAGTGAGCAATTCAACTTGTGGAGGAATGAGAATTGACAGTGTTGAGATGAGAAACATAAAACCCCAGAGTAAGGTAGGAATCACTGAAAGTCAGGCAAAGGAACTGGCGTCCAGTAATGAGTTAGG-----CTTTGCCAGTCTCTGGCCCTACAGATGGCTCTTTGGAGAGGAAAAAATTAAGCTAGGCCTAAGGCCACAGATCCTAAGGGACTGCCGGCAGCTCGAGGCTGTCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106529175 284 - 171882078 CCAACCATGTGCCTAGAGTTAACTGTGTCAAGAAGAGCATGCTTCAGGTGGCTGGAGTGAGCAGTTCAACTTGTGGAGGAATGAGAAATGATAGTGTTGAGACAAGAAACACAAAA-CCCAGGGTAAGGTAGGAATCACTGAAAGTCAGGCAAAGGAACTGGCATCCAGAAATGAGTCAGG-----CTTTGCCAACCTCTGGCCCTACACGTGGCCCTTTGGAGAGGAAAAAATTAAGTCAGACCCGAGGGCGCAGATTGTAAGGAAATGCCGGCAGCTCTGGGCTGTCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20393607 285 -  24206276 CCAACCATGTGCCTAGAGCTAACTGTGTCAAGAAGGGCACACTTCAATTGGCTGGAGTGAGCAATTCAACTTGTGGAGGAATGAGAAATGATAGTGTTGAGACAAGAAACATAAAACCCCAGGGTAAGGTAGGAATCACTGAAAGTCAGGCAAAGGAACTGGCATCCAGTGATGAGTCAGG-----CTTTGCCCGTCTCTGGCCCTACAGATGGCTCTTTGGAAAGGAAAAAATTAAGCCAGGCCCGAGGGCACAGATCCTAAGGGACTGCTAgcagctctaggctgtct
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1598687 281 +   1678425 CCAACCATGTGCCTAGAGCTAACTGTGTCAAGA---GCATGCTTCAGTTGACTGGAGTGAGCAATTCAACTTGT-GAGGAATGAGAAATGTTAGATTTGAGACAAGAAACATAAAACCCCAGGGTAAGGTAGGAATCACTGAAAGTCAGGCAAAGGACCTGGCATCCAGTAATGAGTTAGG-----CTTTTCCGGCGTCTGGCCCTACAGATGGCTCTTTGGAGAAGAAAAAATCAAGCTAGGCCTGAAGGCACAGATCCTAAGGGAATGCTGGCAGCTCTAGGCTATCT
i manLeu1.NW_012107797v1    C 0 C 0
s saiBol1.JH378276            2829078 284 +   3282555 CCAA-CATGTGCCTAGAGCTATCTGTGTAGAGAAGAGCATGCTTCAGTTGCCTGGAGTGAGCAATTCAACTTGTGGAGAAACGAGAAATGAGAGTGTTAAGACAAGAAACATAAAACCCCAGGGTAAGGTACGAATCACTGAAAGTCAGGCAAAGGAACTGGTGTCCAGGAATGAGTTAGG-----CTTTGCCCGCCTCTGGCCCTAGAGATGGCTCTTTGGAGAGGAATAAATTCAGCCAGGCCCAAGGCCACAGATCCTAAGAGACTGCCGGCAGCTCTAGGCTATCT
i saiBol1.JH378276          I 2 C 0
s cebCap1.NW_016107979v1       782485 285 +   1024465 CCAATCATGTGCCTAGAGCTATCTGTGTCAAGAAGAGCATGCTTCAATTGGCTGGAGTGAGCAATTCAACTTGTGGAGAAATGAGAAATGATAGTGTTAAGACAAGAAACATAAAACCCCAGGGTAAGGTAGGAATCACTGAAAGTCAGGCAAAGGAACTGGCGTCCAGTAATGAATTAGG-----CTTTGCTGGCCTCTGGCCCTACAGATGGCTCTTTGGAGAGGAATAAATTCAGCCAGGCCCAAGGCCACAGATCCTAAGAGACTGCtggcggctctaggctatct
i cebCap1.NW_016107979v1    I 2 C 0
s aotNan1.NW_018511953v1      3061211 285 +   3745603 CCAATCATGTGCCTAGAGCTATCTGTGTCAAGAAGAGCATGCTTCAATTGGCTGGAGTGAGCAATTCAACTTGTGGAGAAATGAGAAATGATAGTGTTAAGACAGGAAGCATAAAACCCCAGGGTAAGGTAGGAATCACTGAAAGTCAGGCAAAGGAACTGGCGTCCAGTAATGAGTTAGG-----CTTTGCTGGCCTCTGGCCCTACAGACAGCTCTTTGGAGAGGAAAAAATTCAGCTGGGCCTAAGGCCACAGATCCTAAGGGACTGCTGGCAGCTCTAGGCTATCT
i aotNan1.NW_018511953v1    I 10 C 0
s otoGar3.GL873530           29625451 285 +  36342412 CCAACCACATGCCGAAAGCTGTCTATGTCATGAAGAGCACGCTTCACTAGGCTGGAGGGAGCAGTCCAGC-CGGGGAAGAATGAGAAATGAGAGTGTTGGAATAAAGAGAAGAAACACCCAGGGGATGCAGGGAATCTCTGAATGTCGGGAAAAGGAATTAGGGTCTGGTAATGAGTTAGGACAAAACCGGCCATCTGCTGGTCCTACAGATGGCTCTTTGGAGAGG---ACATTCAAC-AGGCCTGAGGCCACAGATCCTAAGGGACGGCCTGCAGCTCTAGGCTCTCT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=2818.000000
s hg38.chr15_KI270850v1_alt    124267 1 +    430880 A
s gorGor5.CYUI01015946v1        47384 1 -    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25594006 1 - 121039945 A
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106529459 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20393892 1 -  24206276 a
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1598968 1 +   1678425 A
i manLeu1.NW_012107797v1    C 0 C 0
s saiBol1.JH378276            2829362 1 +   3282555 A
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       782770 1 +   1024465 a
i cebCap1.NW_016107979v1    C 0 I 10792
s aotNan1.NW_018511953v1      3061496 1 +   3745603 A
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530           29625736 1 +  36342412 G
i otoGar3.GL873530          C 0 I 61095
s canFam3.chr9                5818449 1 -  61074082 a
i canFam3.chr9              N 0 I 1
e calJac3.chr10             113866255 79192 - 132174527 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=3825.000000
s hg38.chr15_KI270850v1_alt    124268 2 +    430880 TG
s gorGor5.CYUI01015946v1        47385 2 -    378907 TG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25594007 2 - 121039945 TG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106529460 2 - 171882078 TG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20393893 2 -  24206276 tg
i chlSab2.chr29             C 0 T 85275
s manLeu1.NW_012107797v1      1598969 2 +   1678425 TG
i manLeu1.NW_012107797v1    C 0 I 4587
s saiBol1.JH378276            2829363 2 +   3282555 TG
i saiBol1.JH378276          C 0 I 11176
s aotNan1.NW_018511953v1      3061497 2 +   3745603 TG
i aotNan1.NW_018511953v1    C 0 I 10557
s canFam3.chr9                5818451 1 -  61074082 t-
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958             395109 2 -    584178 tg
i dasNov3.JH564958          N 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       782771 10792 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I

a score=294.000000
s hg38.chr15_KI270850v1_alt    124270 1 +    430880 A
s gorGor5.CYUI01015946v1        47387 1 -    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25594009 1 - 121039945 G
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106529462 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s canFam3.chr9                5818452 1 -  61074082 g
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             395111 1 -    584178 g
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3061499 10557 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       782771 10792 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e manLeu1.NW_012107797v1      1598971 4587 +   1678425 I
e chlSab2.chr29              20393895 85275 -  24206276 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e rheMac8.chr7              113402998 56372 - 169600520 I
e saiBol1.JH378276            2829365 11176 +   3282555 I

a score=5325.000000
s hg38.chr15_KI270850v1_alt    124271 3 +    430880 GAG
s gorGor5.CYUI01015946v1        47388 3 -    378907 GAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25594010 3 - 121039945 AAG
i nomLeu3.chr6              C 0 I 45855
s rheMac8.chr7              113459370 3 - 169600520 gag
i rheMac8.chr7              I 56372 C 0
s macFas5.chr7              106529463 3 - 171882078 gag
i macFas5.chr7              C 0 C 0
s canFam3.chr9                5818453 3 -  61074082 gag
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             395112 3 -    584178 gag
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3061499 10557 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       782771 10792 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e manLeu1.NW_012107797v1      1598971 4587 +   1678425 I
e chlSab2.chr29              20393895 85275 -  24206276 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e saiBol1.JH378276            2829365 11176 +   3282555 I

a score=93789.000000
s hg38.chr15_KI270850v1_alt    124274 101 +    430880 TCCAGAGATGCTGCTTCACCCtggggctttaggcaagtccctttccctcccagagcctcagcatcccttctagcaaatga-------cgttctgcctttctcctagga
s gorGor5.CYUI01015946v1        47391 101 -    378907 TCCAGAGATGCTGCTTCACCCtggggctttaggcaagtccctttccctcccagagcctcagcatcccttctagcaaatga-------cgttctgcctttctcctagga
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              113459373 102 - 169600520 tccagagatgctgc-tcaccctgggacttcaggcaagtccc-tttccttccagagcctcagcatcctttctatcaaatga----tttctttctgcctttctcccaggg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106529466 104 - 171882078 tccagatttgctgcttcatcctggggctttaggcaagtcccttttcctcccagagcttcagtatcccttctatcaaatga----tgatgttctgcctttctcctagga
i macFas5.chr7              C 0 C 0
s canFam3.chr9                5818456 107 -  61074082 tccagatgttctggttcaccctggg-ctttcggcaagtcactttctcttccagggccttagtttcccttctaccacatgatatttaacattctgcctttctcccaggg
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958             395115 102 -    584178 tccagagatgctggtttaccttgggtccttaggcaaatcac-ttcccttct-gggcctcagttttcattctaccaaatga----taatgttctacctttctcccaggg
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3061499 10557 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       782771 10792 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e manLeu1.NW_012107797v1      1598971 4587 +   1678425 I
e chlSab2.chr29              20393895 85275 -  24206276 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e nomLeu3.chr6               25594013 45855 - 121039945 I
e saiBol1.JH378276            2829365 11176 +   3282555 I

a score=-496.000000
s hg38.chr15_KI270850v1_alt    124375 4 +    430880 -tggc
s gorGor5.CYUI01015946v1        47492 4 -    378907 -tggc
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              113459475 4 - 169600520 -tgtc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106529570 4 - 171882078 -tggc
i macFas5.chr7              C 0 C 0
s saiBol1.JH378276            2840541 4 +   3282555 -TAGT
i saiBol1.JH378276          I 11176 C 0
s canFam3.chr9                5818564 3 -  61074082 -tgg-
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958             395217 4 -    584178 ttag-
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3061499 10557 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       782771 10792 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e manLeu1.NW_012107797v1      1598971 4587 +   1678425 I
e chlSab2.chr29              20393895 85275 -  24206276 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e nomLeu3.chr6               25594013 45855 - 121039945 I

a score=904854.000000
s hg38.chr15_KI270850v1_alt    124379 423 +    430880 tgtggggatcaagggagacagtggccatagggata---------------------ctatgtt----aactgcagaTGCGGCTGTAGGAGCACTTTGCTAACTTCCAGCGTGAGTTCAGACTCTTCAGGCTATTTG---GCACCCAGATCTATGGTGAGGTGTGACATATGGGA--TGTAAAGTTTGATGCCTGCTCCGACTCCAGTCTTGCTAACACACACGAAACCTTTGGTAAATCATGACCCTGCCTTGGGGAAAAGGGCAGTCTGGGAGAGCTTCTTCAAGGCAGCCTGGCTTCAATGCAGTCTGGGGCATGACTGAGGT-AGGCATACATGGTGAGGAACTGGAGGGTAACTGGGTAAAGAGCT---------GCAGTGTGGGCAGAGG-TGTAGTGTGGGTCACATCGCGGATAGCCACTGGCCAAAG-----CAGGGAACAGAGACAGAATGAGGAAGAGC
s gorGor5.CYUI01015946v1        47496 423 -    378907 tgtggggatcaagggagacagtggccatagggata---------------------ctatgtt----aactgcagaTGCGGCTGTAGGAGCACTTTGCTAACTTCCAACGTGAGTTCAGACTCTTCAGGCTATTTG---GCACCCAGATCTATGGTGAGGTGTGACATATGGGA--TGTAAAGTTTGATGCCTGCTCTGACTCCAGGCTTGCTAACACACACGAAACCTTTGGCAAATCATGACCCTGCCTTGGGGAAAAGGGCAGTCTGGGAGAGCTTCTTCAAGGCAGCCTGGCTTCAATGCAGTCCGGGGCATGACTGAGAT-AGGCATACGTGGTGAGGAACTGGAGGGTCACTGGGTAAAGAGCT---------GCAGTGTGGGCAGAGG-TGTAGTGTGGGTCACATTGAGGATAGCCACTGGCCAAAG-----CAGGGAACAGAGACAGAATGAGGAAGAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              113459479 423 - 169600520 tgtggggatcaagggagacagtggtcatagggata---------------------ctgtgtt----aactgcagaTGCGGCTGTAGGAGCACTTTGCTAACTACCAACGTGAGTTCAGACTCTTCAGGGTATTTG---GCACCCAGGTCTGTGGTGAGGTGTGACATATGGGA--TGTAAGGTTTGATGCCTGCTCCAACTCTAGTCTTACTAACGCAAGCAAAACATTTGGCAAGTCATGACCCTGCCTTGGGGAAAAGGGCAGTCTGGGAGAGCTTCTTCAAGGCAGCCTGGCTTCAATGCAGTCCGGGGCATGACTGAGAT-AGGCTTATGTGATGAGGAATTGGAGGGTGTCTGGGTAAAGAGCT---------GCAGTGTGGGCAGAGG-TTTAGTGTGGGACTCACTGAGGACACCCACTGGCCAAAG-----CAGGGAACAGAGACAGAAAGAGAAAGAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106529574 421 - 171882078 tgtggagatcccgggaggcagtggccatagggatg---------------------ctatgtt----aactgcagaTGCAGCCATAGGAGCCCTTTGCTAACTGCCAACGTGAGTTCAGACTCTTCAAGCTATTTG---GCACCCaggtgtgtggtgaggtgtgacatgtggga--tgtaaggtttgaTGCCTGCTCCGACTCCAGTCTTGCTAACACACGCTAAACATTTGACAAATCCTGACCTTACCTTGGGGAAAAGGGCAGTCTGGGAGAGCTTCTTCAAGGCAGGCTGGCTTCAATGCAGTCCGGGGCATGACTGAGAT-AGGCTTATGTGGTGAGGAATTGGAGGATAACTGGGTAAAAAGCT---------GC--CATGGGCAGAGG-TGTAGTGTGGGTCGCATCGAGGATAGCCCCTGGCCAAAG-----CAGGGAACACAGACAGAATGAGGAAGAGC
i macFas5.chr7              C 0 C 0
s saiBol1.JH378276            2840545 416 +   3282555 TGTGGGGATCAAGGGAGACAGTGGCCACAGAGATG---------------------CCGTGTT----AACTGCAGATGTGGCTGTCGGAGCACTTTGCGAACTGCCAATGTGAGTTCAGACTCTTCAGGGTATTTG---GCACCCAGGTCTACGGTGAGGTGTGACATATACGA--GGTAAGGTTTGATGCCTGCTCCGACTCCAGTTTCACTGACACCCAGGAGACATTTGGCAACTCACGGCCCTGCCTTGGGGAAAAGAGCAGTCTGGGAGAGCTTCTTCAAGGCAGCCTGACTTCACTGTGGTCCGGGGCATGACTG-----AGGCTTACCTGGCAAGGAATTGGAGGGTATCTGAGTAAAGAGCT---------GCAGTGTGGGCAGAGG-TGTAGTGTGG---GCACTGAGGACAGCCACCGGCCAAAG-----CAGGGAACAGAAACAGAATGAGGAAGAGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       793563 410 +   1024465 TGTGGGGATCAAGGGAGACAGTGGCAACAGGGGTG---------------------CTGTGTT----AACTGCAGATGTGGCTGTAGGAGCACTTTGCTAACCACCAATGTGAGTTCAGACTCTTCAGGGTATTTG---GTGCCCAGGTCTATGGTGAGGTGTGACATATGGGA--GGTAAGGTTTGATGCCTGCTCCGACTCCAGTCTCACTGATACCCAGGAGACATGTGGCAAATCATGGCCCTGCCTTGGGGAAAAGAGCAGTCTGGGAGAGCTTCTTCAAGGCAGCCTGACTTCAATGTGGTCTGGGGCATGACTGAGAC-AGGCTTATGTGAGGAGGGACTGGAGGGTATCTGGGTAAAGAGCT---------GCAGTGTGGGCAGAGG-TGTAGTGTGG---GCA----------CCACTGGCCAAAG-----CAGGGAACAGAGACAGAATGAGGAAGAGC
i cebCap1.NW_016107979v1    I 10792 C 0
s aotNan1.NW_018511953v1      3072056 428 +   3745603 TGTGGGGATCAAGGCAGACAGTGGCCACAGGGATC---------------------CTGTGTT----AACTGCAGATGCAGCCGTAGGGGCACTGTGCTAACTGCCAATGTGAGTTCAGACTCCTCAGGGTATTTG---GCGCCCAGGTCTATGGTGAGGTGTGATATATGGGA--GGTAAGGTTTGATGCCTGCTCCAACTCCAGTCTCACTGACACCCAGGAGACATTTGGCAACTCATGGCCCTGCCTTGGGGAAAAGAGCAGTCTGGGAGAGCTTCTTCAAGGCAGCCTGACTTCACTGTGGTCCGGGGCATGACTG-----AGGCTTACATGGCGAGAAATTGGAGGGTATCTGGGTAAAGAGCTGCAGTGTGGGCAGTGTGGGCAGAGG-TGTAGTGTGGGCTGCACCAAGGACAGCCACTGGCCAAAG-----CAGGGAACAGAGACAGAATGAGGAAGAGC
i aotNan1.NW_018511953v1    I 10557 C 0
s canFam3.chr9                5818567 432 -  61074082 tgtgaggatcaagggagacagtgactgtagaaCTGTCTGCAGTTCTACAGTTCAGACTGTAGCCACAAACTGCAGATGTGGCTATAGGAGCACTTTGCTAACTTCTCTTGTGAGTCGAGATTCTTAAGGGTATTTG---AC----------ATGCCCAGGTGTGACATATGGGAAGAGGAAGATTTGGCACCTGCTCTAACTCCAGTCTCACTAACATACAGGAAATGCTTGGCAAGTCATCGCCTTGCCTCGGGGAAGAGAACAGTCTGGGA----TGCTTCAAGACAGATTGACCTAGGGGAGGTCTGGGGGCTGATTGAGATAAGACTCAGGTGATGAGGAGTCAGGGG---CGTCGGTATGGAGCA---------GCAATGAAGGCAAAGG-TTTAGCTTGGGATGCATTGAGGAGAGCCACTGGCCAGAG-----AAGAGTGC--AGATAGAATGAGGAAGAAT
i canFam3.chr9              C 0 I 11
s dasNov3.JH564958             395221 400 -    584178 tgtgggaatcaaggtggacaatggctataggggtg---------------------ctgcatt----agctgcagatgtggctgtaGGAG-ACTTTGCTAACTGCCAACGTGAGTTCAGATTACTAAGGCTATTTACACCTGCCCTGGTCT------AAGCGCGATATAAGGGAACTGCAAGATCTGGTACCTGCTCTAGCTCCAGTCTTGCTAGCACACTGGAAAGTTTTGCTGAGTC-CAGCCTTGCCTTGAAGAAGGGAGCAATCTGATGGTGCTTCTTAAAAGCAAATTGACTTCCCTGAGGTCTGGTAGATGATGAAGGT--------------GAGGAG-------------GGGCAGGGAGCA---------GCAGCCTGGGAAAAGGTTTTCATGTGGGCTTCATGGAGAAGAGCCGCCAGCCAGAGGAGACCAGGAGAGCAAGGAGGAATAAGAGGGAGG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              76683633 24711 +  99763055 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e manLeu1.NW_012107797v1      1598971 4587 +   1678425 I
e chlSab2.chr29              20393895 85275 -  24206276 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e nomLeu3.chr6               25594013 45855 - 121039945 I

a score=945141.000000
s hg38.chr15_KI270850v1_alt    124802 340 +    430880 --TCTGTGGGGAGGGTGGGGCACAGGGTGGAGAACCTTCAAAGTCCAAAGAG----TATGACTTGTTGGGATTCAACGCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTGAGGTGG------------------------AGAAATGACAGCCGGACATT--AGTGAGCAAGCCCTGTCTCC--GTGAGCAGCATGGGTGGTCCTCTGAGCACGCCAGGCACGAGTGTGCAGGGAGCTGGTGCAAATGCCT-CTGTGTGCGGGTGAGCATCTGTGTTGTGACTCTGCCCACGCATGTGCTTCAGTGTGCCGAGTGGCTGCACGCCCCAGATCCATGTGGCACGTGCCGGCCGGTGAGGGTGCTG-GGCATTGGGAG
s panPan2.chr15              23125870 363 -  99763055 --TCTGTGGGGAGGGTGGGGCATAGGGTGGAGAACCTTCAAAGTCTGAAGAG----TTTGACTT-TTGGGGCTCAATGCTGCAGGCCATAGGGAGCCATGGAAGGCTCTTAGGTGGGTCAGACTCTCTGACCTGAGGTAAATAAATGACAGCTGGACATT--AGTGAGCAAGCCCTGTCTCC--ATGAGCAGCACCGGTGGTCCTCTGAGCATGCCAGGCATGAGTGTGCAGGGAGCTGGTGCAAATGCCT-CTGTGTTTGGGTGAGCTTCTGTGTTGTGACTCTGCTCACATGTGTGCTTCAGTGTGCCAAGTGGCTGCACACCCCAGATCTGTGCTGCACGTGCCAGCCAGTGAGGGTGCTG-GGTACCGGGAG
i panPan2.chr15             I 24711 C 0
s gorGor5.CYUI01015946v1        47919 340 -    378907 --TCTGTGGGGAGGGTGGGGCACAGGGTGGAGAACCTTCAAAGTCCAAAAAG----TATGACTTGTTGGGATTCAACGCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTTAGGTGG------------------------AGAAATGACAGCTGGACATT--AGTGAGCAAGCCCTGTCTCC--CTGAGCAGCATGGGTGGTCCTCTGAGCACGCCAGGCACGAGTGTGCAGGGAGCTGGTGCAAATGCCT-CTGTGTGCGGGTGAGCATCTGTGTTGTGACTCTGCCCACGCATGTGCTTCAGTGTGCCGAGTGGCTGCACACCCCAGATCCATGCGGCACGTGCCGGCCAGTGAGGGTGCTG-GGCACCGGGAG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              113459902 338 - 169600520 --TCTGTGGGGAGGGTGGGGCATAGGGTGGAGAA-CTTCAAAGTCCGAAGAG----TATGACTTGTTGGGGCTCAATGCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTTAGGTAG------------------------AGAAATGGCAGCTGAACATT--AGCGAGCAAGCGCTGTCTCC--ATGAGCAGCATGGATGGTCCTCTGAGCATGCCA-GCATGAGTGTGCAGGGAGCTGGTGCAAATGCCT-CTGTGTGTGGGTGAGCTTCTGTGTTGTGACTCTGCCCATGTGTGTGCTTCAGTGTGCCGAGTGGCTGCGTGCCCCAGATCTGTGCTGCACGTGCCAGCCAGTGAGGGTACTG-GGCACTGGGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106529995 329 - 171882078 --TCTGTGGGGAAGGTGGGGCGTAGGGTGGAGAACCTTCAAAGTCTGAAGAG----TGTGACTTGTTGGGGTTCAGTGCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTTAGGTGG------------------------AGAAATGACAGCTGGACATT--GGTGAGCAAGCCCTGTCTCC--ATGAGCAGCGTGGGTGGTCCTCTGAGCACACCAGGCACGAGTGTGCAGGGAGCTGGTGCAAATGCCT-CTGTGTGCGGGCGAGCATCTGTGTTGTGACTCTGCCCACGCATGTGCTTCAGTGTGCCGAGTGGCTGCATGTCCCAGATCCTTGTGGCACAGGCCGGCCAATGAGGGTGCTG------------
i macFas5.chr7              C 0 C 0
s saiBol1.JH378276            2840961 325 +   3282555 --TCTGT-GGGAGGGT-GGGCATAGGCTGGAGAACCTTCATAGTCTGAAGAG----TTCGACTTGTTGGGGCTCGATCCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTTAGGTGG------------------------AGAAATT---GCTGGAGATT--AGTGAGCAAGCCCTGTCTCC--ATGAGCAGCACGGGTGGTCC----------ACAGGCATGACTGTGCAGGGAGCTGGTGCAAATGCCT-CTGTGTGCCGGTGAGCTTCTATGTTGTGACGCTGCCCACGTGTGTGCTTCAGTGTGCCGAGTGGTTGCACACCCCAGATCTGTGCTGCACGTGCTTGCCAGTGAGGGTGCCG-GGCACTGGGAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       793973 307 +   1024465 --TCTGT-GGGAGGGT-GGGCACAGGGTGGAGAACCTTCAAATTCCAAAGAA----TTTGACTTGTTGGGGCTCAATCCTGTAGGCAGTA--GAGCCATGGAAGGCTCTTAGGTGG------------------------AGAAATT---GCTGAAGATT--AGTGAGCAAGCCCTGTCTCC--ATGAGCAGCACGGGTGGTCC----------ACAGGCATGACTGTGCAGGGAGCTGGTGCA-----------------GGTGAGCTTCTATGTTGTGACACTGTCCACGTGTGTGCTTCAGTGTGCCGAGTGGCTGCACACCCCAGATCTGTGCTGCATGTGCCTGCCAGTGAGGGTGACG-GGCACTGGGAG
i cebCap1.NW_016107979v1    C 0 n 0
s aotNan1.NW_018511953v1      3072484 323 +   3745603 --TCTGT-AGGAGGGT-GGGCATAGGGTGGAGAACCTTC--AGTCTGAAGAG----TTTGACTTGTTGGGGCTCAGTGCTATGGGCAGTAGGGAGCCATGGAAGGCTCTTAGGTGG------------------------AGAAATT---GCTGGAGATT--AGTGAGCAAGCCCTGTCTCC--ATGAGCAGCATGGGTGGTCC----------ACAGGCATGACTGTGCAGGGAGCTGGTGCAAATGCCT-CTGTGTGCAGGTGAGCTTCTATGTTGTGGCACTGCCCATGTGTGTGCTTCAGTGTGCCGAGTGGCTGCACACCCCAGATCTGTGCTGCACGTGCCTGCCAGTGAGGGTGCCA-GGCACTGGGAG
i aotNan1.NW_018511953v1    C 0 I 19268
s canFam3.chr9                5819010 327 -  61074082 --GCCGTGGGTACAGT-GGGGGCAGGCTGCAGAACCTTAAAAATTC-------------------TTGGGACTCAATGCTATGGGGACTAGGGAGCCATGGAAGGTTCTCGGGCAG------------------------AGAAATGACAGCTGGACCCT-GAGAAAGCAAGTCCTGTCCCTTATGGAGCATTGCAGGTGGCCCTCTGAGCACTCCAGGCACGAATGTGCAGGGAGCTGGTGCAAATGCCTCCTGTGTATGGGCGAGCTTCTGTGTCGTGACTCAGCCCACGCGTGTGCTTCAATGTGCCGAGTGGCTGCATGCCCC-GATCCGTGCTGCACGTGCCAGCCAGTGAGGGTGCTG-GGCAGCGGGAG
i canFam3.chr9              I 11 C 0
s dasNov3.JH564958             395621 334 -    584178 TTGCCCTGGGTAGGGTGGGG--TAGGTTGGGGGATCCTTAAAGTCCGCAGAGGAGTTTTGATTTGTTGGGTCTCAGTGCTGCGGGCAACAGGGAGCCATCGAAGGCTCTCAAGCTG------------------------AGAAAGGACAGCTGGACCCCCAAGAAAGCAAGTGTTGCCCCT--------------TATGGCCCTCCGAGCATGCCAGG-ACGTGTGTGCAGGGAGCTGGTGCAAATGCCTTCTGTGTGCGGGCGAGCTTCTGTGTTGTGACTCAGCCCACGCGTGTGCTTCAGTGTACTGAGTGGCTGCATGCCCCAGATCTGTGCTGCACGTGCCAGCCAG-GAGGGTGCCGGGGTACGGGGTG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e manLeu1.NW_012107797v1      1598971 4587 +   1678425 I
e chlSab2.chr29              20393895 85275 -  24206276 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e nomLeu3.chr6               25594013 45855 - 121039945 I

a score=19590.000000
s hg38.chr15_KI270850v1_alt    125142 21 +    430880 -----------GTGGCGGGGAG-GGCGACGTAT
s panPan2.chr15              23126233 21 -  99763055 -----------GTGGCGGGGAA-GGAGGCGTAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        48259 21 -    378907 -----------GTGGCGGAGAG-GGTGACGTAT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              113460240 21 - 169600520 -----------GTGGCAGGGAA-GGAGGCGTAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106530324 19 - 171882078 -------------GGCGGGGAA-GGCAGCGTAT
i macFas5.chr7              C 0 C 0
s saiBol1.JH378276            2841286 21 +   3282555 -----------CTGGTAGGGAA-GGAGGCGTGT
i saiBol1.JH378276          C 0 n 0
s canFam3.chr9                5819337 15 -  61074082 -----------------GTGGG-GGAGGTGTAT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             395955 33 -    584178 GGGTTGGGGGAATGGAGGGCAATGGGAGTGTAT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3072807 19268 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e manLeu1.NW_012107797v1      1598971 4587 +   1678425 I
e chlSab2.chr29              20393895 85275 -  24206276 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e nomLeu3.chr6               25594013 45855 - 121039945 I

a score=594216.000000
s hg38.chr15_KI270850v1_alt    125163 409 +    430880 GCGTGTTGTTTGTGGGCATGTGTGTTAGCGTGTGCATGTGG---------GCCGTGGGGCCTCACAGCATGTGTGTGCACACTCCGGCATGTGC--GTGTGTGTGTCCCCCA-CCCCCAGGCCTGCCCCACCCATGCATGTGACCTGCCATG-TGATTTGAAGCTGTCTTTCAGAATCACTATCAGTGGCCCCTGAGGAGCGTCAGCCATGGTAGG----TACATGCCTCACTGCCTGCTGCATGAATGGTCTGCCTGCC------------CC--GCTGCCCCAGCTCCACAC-AGGGGGCATACCTGGAGCCTCAGAGCCAGGCTCCCTGCCC-CTCCCTTCTGGAGCTGCAGACTTGCTCTTTCCTCTTTCTGTCCTTG-TGCT-GCTGGCTGTCTCACTTTGC-TCCCTGTGAGCCACGGGACTCACTGCCACTGCTCAAG
s panPan2.chr15              23126254 413 -  99763055 GCGTG----TTGTGGACATGTGTGTTAGCGTGTGCATGCCGGCTGTGCATGCTGTGGGGCCTCATAGCATGTGTGTGCACACCCCGGCATGTGCGTGTGTGTGTGTCCCCCA-ACCCCAGGCCTGCCCTACCCATGCGTGTGACCTGCCATGTTGATCTGATG----CTTTCAGAATCACTATCAATGGTCCCTGAGGAGCATCAGCCATGGTAGG----TACATGCCTCACCGCCTGCTGCATGAATGGTGTTCCCGCC------------CC--GCTGCACCGGCTCCACAC--GGGGGCGCACCTGGGACCTCAGATCCAGGCTCCCTGCCC-CTCCCTTCTGGAGCTGCAGATTTGCTCTTTCCTCTTTCTGTCCTGG-TGCT-GCTGGCTCTCTCACCTCCCTTCCCTGCAAGCCATGGGACTCAGCGCCACTGCCCAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        48280 409 -    378907 GCATGTTGTATGTGGGCATGTGTGTTAGCGTGTGCATGCGG---------GCCGTGGGGCCTCACAGCATGTGTGTGCACACTCCTGCATGTGC--GTGTGTGTGTCCCCCA-CCCCCAGGCCTGCCCCACCCATGCATGTGACCTGCCATG-TGATTTGAAGCTGTCTTTCAGAATCACTATCAGTGGCCCCTGAGGAGCGTCAGCCATGGTAGG----TACATGTCTCGCTGCCTGCTGCATGAATGGTCTGCCCTTC------------CC--ACTGCCCCAGCTCCACAC-AGGGGGCATACCTGGAGCCTCAGAGCCAGGCTCCCTGCCC-CTCCCTTCTGGAGCTGCAGACTTGCTCTGTCCTCTTTCTGTCCTTG-TGCT-GTTGGCTGTCTCACTTTGC-TCCCTGTGAGCCACGGGACTCAGGGCCACTACTCAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              113460261 404 - 169600520 GCGTG----TTGTGGGCATGTGTGTTAGTGTGTGCATGCCG---------GCAGTGGGGCCTCATAGCATGTGTGTGCACACCCCGGCAAGTGC--ATGTGTGTGTCCCCCA-ACCCCAGGCCTGCCCCACCCATGCATGTGAGCTGCCATGTTGATTTGATGCTGTCTTTCAGAATCACTATCAGTGGCTCCTGAGGAGCATCAGCCATGGTAGG----TACATGCCTCGCCGCCTGCTGCATGAATGGTGTTCCCGCC------------CC--ACTGCACCAGCTCCACAC--GGGGGCACACCTGGGACCTCAGATCCAGGCTCCCTGCCC-CTCCTTTCTGGAGCTGCAGATTTGCTCTTTCCTCTTTCTGTCCTCG-TGCT-G-TGGCTCTCTCACCTCCCTTCCCTGTGAGCCATGGGACTCAGCACCAC-GCCCATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106530343 405 - 171882078 GCGTGTTTTTTGTGGGCATGTGTGTTAGTGTGTGCATGCAG---------GCAGTGGGGCCTCACAGCATGTGTGTGCACACTCCGGCGTGTGC----GTGTGTGTCCCCCA-CCCTCAGG-CTGCCCCA-CCATGCATGTGACCTGCCATG-TGATTTGATGCTGTCTTTCAGAATCACTATCGGTGTTCCCTGAGGAGCGTCAGCCTTGGTAGG----TACATGCTTTGCTGCCTGCTGCATGAAAGGTCTGCCTGCC------------CC--GCTGCCCCAGCCCCACAT-GGGGGGCCTACCTGGGACCTCAGAGCCAGGCTCCCTGCCC-CTCCCTTCTGGAGCTGCAGACTTGCTCTTTGCTCTTTCTGTCTTTG-TGCT-GCTGGCTGTCTCACTTCTC-TCCCTGCGAGCCATGGGACTCAGTGTCACTGCTCCAG
i macFas5.chr7              C 0 C 0
s canFam3.chr9                5819352 432 -  61074082 GCGTGTTGTCTGTGGGCATGTGTGTCAGTGTGTGCATGCGGG--------GCCGTGGGGCCTCCCAGCATGTGTGTGCACGCCCGGGCGTGTGC--GTGTGCGTGACCCCCACCCCCCAGGCCTGCCCTGTCTGTGCGTGTGAACTGCCATGTTGATCTCGTGCTGTCTTTCAGAATCACTATCAGTGACCCCTGAGGAGCGTCAGCCACGGTAGGTGCATACATGCCTCTCTGCCTGCTGCATGAACAGTGTGTCTGCCCCCCGCCCCCCGCC--GCTGCACCAGCTCCACACTGGGGGGCGCACCTGGGACCTCAGAGCCAGGCTCCCCTCCCTCTCCCTTCTGCAGCTCCAGACTTATTCTTTCCTCTTTCTGTCCTCGCTGCCAGCTGGCTCTCTCACCTCCC-TCTCAGCGAGCCTCGGGACTCAGTGCCACTGCTCAAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             395988 416 -    584178 GCGTGTTGTTTGTGGGCATGTGTGTTAGCGTGTGCATGCAGG--------GCCATGGGGCCTCACAGCATGTGTGTGCACGCCCAGGCGTGTGC--GTGTGCGTATCCCCCA-ACCCCTGGCCTGCCCCATCCGTGCGTGTGAACTGCCATGTTGATTTCGTGCTGTCTTTCAGAATCACTATCAGTGACCCCTGAGGAGCGTCAGCCACGGTAGG----TACATGCCTCTCTGCCTGCTGCATGA--GGTGTGTCTGCC------------CCCTGCTGCACCAGCTCCACACTGGGGGGCATACCTGGGGCCTCAGAACAAGGCTCCCCTCCCTCTCCCTTCTGCAGCTCCAGACTTAATCTTTCCTCTTTCTGTCCTTGCCACCAGCTGGCTGTCTCACCTCCCTTCCCAGTGAGCCTCGGGACTCAGTGACACTGCCCAGG
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3072807 19268 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e manLeu1.NW_012107797v1      1598971 4587 +   1678425 I
e chlSab2.chr29              20393895 85275 -  24206276 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e nomLeu3.chr6               25594013 45855 - 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=1869.000000
s hg38.chr15_KI270850v1_alt    125572 2 +    430880 GT
s panPan2.chr15              23126667 2 -  99763055 GC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        48689 2 -    378907 GT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25639868 2 - 121039945 GC
i nomLeu3.chr6              I 45855 C 0
s rheMac8.chr7              113460665 2 - 169600520 GC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106530748 2 - 171882078 GT
i macFas5.chr7              C 0 C 0
s canFam3.chr9                5819784 2 -  61074082 AT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             396404 2 -    584178 AC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3072807 19268 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e manLeu1.NW_012107797v1      1598971 4587 +   1678425 I
e chlSab2.chr29              20393895 85275 -  24206276 T
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e macNem1.NW_012011533v1      3953930 46855 +   4820037 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=5500.000000
s hg38.chr15_KI270850v1_alt    125574 1 +    430880 C
s panPan2.chr15              23126669 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        48691 1 -    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25639870 1 - 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113460667 1 - 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106530750 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4000785 1 +   4820037 C
i macNem1.NW_012011533v1    I 46855 C 0
s chlSab2.chr29               3116906 1 +  24206276 C
i chlSab2.chr29             n 85275 C 0
s manLeu1.NW_012107797v1      1603558 1 +   1678425 C
i manLeu1.NW_012107797v1    I 4587 C 0
s canFam3.chr9                5819786 1 -  61074082 C
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             396406 1 -    584178 C
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3072807 19268 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e cerAty1.NW_011999477v1      9886912 32448 +  10730278 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=270049.000000
s hg38.chr15_KI270850v1_alt    125575 54 +    430880 TCCATGGCTGAGCCTGGGG-GCTCTTACAACAGGCTCCATGCCCAAGGTGGCAGA
s panPan2.chr15              23126670 54 -  99763055 TCCATGGCTGAGCCTGGGG-GCTGTTGGAACAGTCTCCATGCCCAAGCTGGCAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        48692 54 -    378907 TCCACGGCTGAGCCTGGGG-GCTCTTACAACAGGCTCCATGCCCAAGGTGGCAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25639871 54 - 121039945 TCCGTGGCGGAGCCTGTGG-GCTCTTGGAACAGGCTCCGTGCCCAAGCAGGCAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113460668 54 - 169600520 TCCATGGCTGAGCCTGGGG-GCTCTTGGAACAGGCTCCATGCCCAAGCTGGCAGA
i rheMac8.chr7              C 0 I 11
s macFas5.chr7              106530751 54 - 171882078 TCCATGGCTGAGCCTGGGG-GCTCTTAGAACAGGCTCCATGCCCAAGCTGGCAGA
i macFas5.chr7              C 0 I 2
s macNem1.NW_012011533v1      4000786 54 +   4820037 TCCATGGCTGAGCCTGTGG-GCTCTTGGAACAGGCTCCATTCACAAGCTGGCAGA
i macNem1.NW_012011533v1    C 0 I 11
s cerAty1.NW_011999477v1      9919360 54 +  10730278 TCCATGGCTGAGCCTGTGG-GCTCTTGGAACAGGCTCCATTCTCAAGCTGGCAGA
i cerAty1.NW_011999477v1    I 32448 I 11
s chlSab2.chr29               3116907 54 +  24206276 TCCCTGACTGAGCCTGGGG-GCTCTTGGAATGGGCTCCATGCCCAGGCTGGCAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1603559 54 +   1678425 TCCATGGCTGAGCCTGCGG-GCTCTGGGAACAGGCTCTGTGCCCAAGCTGGCAGA
i manLeu1.NW_012107797v1    C 0 I 25
s canFam3.chr9                5819787 55 -  61074082 TCCATGGCTGAGCCTGGGGAGCTCTTGGGACAGGCTCCGCGCCCGAGCTGGCAGA
i canFam3.chr9              C 0 I 11
s dasNov3.JH564958             396407 55 -    584178 TCCCTGGCTAAGCCTGGGGGGCTCTTGGGACAGGCTCCATGCCCAAACTGGTAGA
i dasNov3.JH564958          C 0 I 11
e aotNan1.NW_018511953v1      3072807 19268 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=15155.000000
s hg38.chr15_KI270850v1_alt    125629 5 +    430880 TGTGG
s panPan2.chr15              23126724 5 -  99763055 CATGG
i panPan2.chr15             C 0 I 11
s gorGor5.CYUI01015946v1        48746 5 -    378907 TGTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25639925 5 - 121039945 CATGG
i nomLeu3.chr6              C 0 I 10
s rheMac8.chr7              113460733 5 - 169600520 TCTGG
i rheMac8.chr7              I 11 C 0
s macFas5.chr7              106530807 3 - 171882078 --TGG
i macFas5.chr7              I 2 C 0
s macNem1.NW_012011533v1      4000851 5 +   4820037 TCTGG
i macNem1.NW_012011533v1    I 11 C 0
s cerAty1.NW_011999477v1      9919425 5 +  10730278 TCTGG
i cerAty1.NW_011999477v1    I 11 C 0
s chlSab2.chr29               3116961 5 +  24206276 CGTGG
i chlSab2.chr29             C 0 I 47
s canFam3.chr9                5819853 5 -  61074082 TCTGG
i canFam3.chr9              I 11 C 0
s dasNov3.JH564958             396473 5 -    584178 TCTGG
i dasNov3.JH564958          I 11 C 0
e aotNan1.NW_018511953v1      3072807 19268 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e manLeu1.NW_012107797v1      1603613 25 +   1678425 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=61965.000000
s hg38.chr15_KI270850v1_alt    125634 18 +    430880 AACCATCAGAGAGGGCAC
s panPan2.chr15              23126740 18 -  99763055 AGTCATCAGAGAGGGCAG
i panPan2.chr15             I 11 C 0
s gorGor5.CYUI01015946v1        48751 18 -    378907 AACCATCAGAGAGGGCAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25639940 18 - 121039945 AGTCATCACAGAGGGCAG
i nomLeu3.chr6              I 10 C 0
s rheMac8.chr7              113460738 18 - 169600520 AGCCATCAGAGAGGGCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106530810 18 - 171882078 AGCCATCAGAGAGGACAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4000856 18 +   4820037 AGTCATCAGAGAGGGCAG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9919430 18 +  10730278 AGTCATCAGAGAGGGCAC
i cerAty1.NW_011999477v1    C 0 C 0
s canFam3.chr9                5819858 18 -  61074082 AGCCATCAGAGAGGACAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             396478 18 -    584178 AGCCATCAGAGAGGACAG
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3072807 19268 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e manLeu1.NW_012107797v1      1603613 25 +   1678425 I
e chlSab2.chr29               3116966 47 +  24206276 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=116421.000000
s hg38.chr15_KI270850v1_alt    125652 27 +    430880 AGAGCTCATGGTTTATGGTGTAGGGGC
s panPan2.chr15              23126758 27 -  99763055 AGAGCTCATGATTTATGGTGTAGGGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        48769 27 -    378907 AGAGCTCATGGTTTATGGTATGGGGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25639958 27 - 121039945 AGAGCTCGTGGTTTATGGTGTAGGGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113460756 27 - 169600520 AGAGCCCATGGTTTATGGTGTAGGGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106530828 27 - 171882078 AGAGCTCGTGGTTTATGGTGTAGGGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4000874 27 +   4820037 AGAGCTCATGGTTTATGGTCCAGGGGC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9919448 27 +  10730278 AGAGCTTGTGGTTTATGGTGTAggggc
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012107797v1      1603638 27 +   1678425 AGAGCTCGTGGTTTACGGTGTAAGGGC
i manLeu1.NW_012107797v1    I 25 C 0
s canFam3.chr9                5819876 27 -  61074082 AGGGCTCATGGTTTATGGTGTAGAGGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             396496 27 -    584178 TGAGCTCATGGTGTATGATGCAGAGGC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3072807 19268 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e chlSab2.chr29               3116966 47 +  24206276 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=1800094.000000
s hg38.chr15_KI270850v1_alt    125679 443 +    430880 TGGGAGCTTGGAGGGGGTTGTGTGGGGGGCTGGACTC--AGGCGGCCAGAGGCCTGGGCACATCATCCT-GGGCACGCCGTACCTGTCATGCAGTCTGAGTCATGCTGCCAGGGCA-GGTATCCAGCTCCCAGCCTGGGAGT--------GCCAAGAGCCAAATCCACTGCAGATTAGGGGTGATAGTCACGGTCCCACGTCCTCTAT-C-TGTCAGCAATCCAGTGGTGATCTAGGA---------------------------TAAAAGCCTGAGAGTCCTATACACG----CGGTCATCCCACAACACACTTCATAGGCCATGGAAGGACACACAGCCCCCTTCCCTCCCTCCCAGGTACCATGATAGCTGCTAGCGTGCGACTGAAGGCAGGGTCCCTGGCCCCTGCTGAAGCACTAC-TGCTGGCCAGCAGGCTCACGCACCTTGGCCTGTTGCTTCTAGGGGTCGCCTGTGCTATTCAGCCA--------A
s panPan2.chr15              23126785 453 -  99763055 TGGGAGCTTGGACAGGGTTGTGTGTGCGGCTGGACTCTGAGGCAGCTAGAGGTCTAGGAACGTCATCCT-GGGCACGCCGTACCTGTCGTGCAGTCTGAGTCATGCTGCCAGGTCAGGGTATCCAGATCCCAGCCTGGGAGT--------GTCAAGAGTCAAACCCACTGCAGAGGAGGGGTGATAGTCAGGGTCCCACCTCCTCTAT-C-TGTTGGCAATCC-CTGGTGATCTAGGA---------------------------TAAAACCTTAAGAGTCCCATACACA----CAGTCATCCCACAACACACTTCACAGGCCAGGCAGGGACACACAGCCCGCTTCCCTCCCTGCCAGGTACCACCGCAGCTGCTAGCGTGTGACTGAAGGCAGGGTCCCTGGCCCCCGCTGAAGCACTAT-CGCCGGCCAGCGGGCTCAGGCACCTTGGCCTGTTGCTCCTAGGGGTCGCCTGTGCTATTCAGCCAAGGGGACCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        48796 450 -    378907 TGGGAGCTTGGAGGGGGTTGTGTGTGGGGCTGGACTC--AGGCGGCCAGAGGCCTGGGCACATCATCCT-GGGCACGCCGTACCTGTCATGCAGCCTGAGTCATGCTGCCAGGGCA-GGTATCCAGCTCCCAGCCTGGGAGT--------GCCGAGAGCCAAATCCACTGCAGATTAGGGGTGATAGTCAGGGTCCCACCTCCTCTAT-C-TGTCAGCAATCTAGTGGTGATCTAGGA---------------------------TAAAAGCCTGAGAGTCCTATACACG----CGGTCATCCCACAACACACTTCATAGGCCATGGAAGGACACACAGCCCCCTTCCCTCCCTCCCAGGTACCATGATAGCTGCTAGCGTGCGACTGAAGGCAGGGTCCCTGGCCCCTGCTGAAGCACTAC-TG-TGGCCAGCAGGCTCACGCACCTTGGCCTGTTGCTTCTAGGGGTCGCCTGTGCTATTCAGCCAAGGGGACCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25639985 454 - 121039945 TGGGAACTTGGAGGGCATTGTGTGTGGGGCTCGACTCTGAGGCGGCCAGAGGCCTAGGAATGTCATCCT-GGGCACAACATAACTGTTGTGCAGGCTGAGTCATGCTGCCAGGGCAGGGTATCCAGTTCCCAGCCTGGGAGT--------GCCGAGAGCCAAATCCACTGCAAAGCGGGGGTGATAGTCAGGGTCCCACCTCTTCTAT-C-TGTTGGCAATCCAGTGGTGATCTAGGA---------------------------TAAAATCTTGAGAGTCCCATACACA----TGGTCATCCCACAACACACCTCACAGGCCAGGCAGGAACACACATCCCCCTTCCCTCCCTCCCAGGTACCACCATAGCTGCTGGTGTGTGACTGAAGGCAGGGTCCCTGGCCCTTGCTGAAACACTAC-CGCCAGCCAGCGGGCTCATGCACCTTGGCCTGTTGCTCCTAGGGGTCACCTGGGCTATTCAGCCAAGGGGACCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113460783 443 - 169600520 TGGGAGCTTGGAGGGCATTG--TGTGGGGCTGGACTCTGAGGAGGCCAGAGGTCTAGGAACGTCATCCT-GGGCACACCATACCTGTCATGCAGTCTGAGTCATGCTGCCAGGGCAGGGCATCCAGCTCCCAGCCTGGGAGT--------GCCGAGAGCCGAATCCACTGCAGAGCAGCGGTGATAGTCAGGGTCCCACCTCCTCTAT-C-TGTTGGCAATCCAGTGGTGATCTAGGA---------------------------TAAAACCTT-AAAGTCCCATACACA----TGGTCATCCCACAACACACCTCACAGGCCAGGCGGGGACACACAGCCCCCTTCCCATCCTCCCAGGTACCATCATAGCTGCTAGCATGTGACCGAAGGCAGGGTCCCTGGCCCCCGCTGAAGCATTAC-CACAGGCCAGCAGGCTCACACAACTTGGCCTGTTGCTTCTAGGGGTCTCCTGTGCTATTCAGCCAA--------
i rheMac8.chr7              C 0 I 8
s macFas5.chr7              106530855 444 - 171882078 TGGGAGCTTGGAGGGGGTTGTGTGTGGGGCTGGAATCTGAGGCGGTCAGAGGTCTAGGCACATCATCCT-GGGCACGCTGTACCTGTCATGCAGTCTGGGTCATGCTGCCAGGG-CAGGTATCCAGCTCCCAGGCTGGGAGT--------GCTGAGAGCCAAATCCACTGCAGATTAAGGATGATAGTTAGGGTCCCACATCCTCCAA-C-TGTCAGCAATCCAGTGGTGATCGAGGA---------------------------TAAAAGCCTGAGAGTCCCATACACA----CGGTCATCCCACAACACACTTCACAGACCGGGCAAGGACACACAGCCCCGTTCCCTCCCTCCCAGGTACCATCATAGCTGCTCGTGTG-GACTGAAGACAGGGTCCCTGGCCCCCGCTGAAGCACTAC-CGCCGACCAGCAGGCTCACTCACCTTGGCCTGTTGCTCCTAGGGGTCTCCTGTGCTATTCATCCAA--------
i macFas5.chr7              C 0 I 8
s macNem1.NW_012011533v1      4000901 446 +   4820037 TGGGAACTTGGAGGGGACTGTATGTGGGGCTGGATACTGAGGCAGTCAGAGGCCTAGGAACATCATCCT-GGGCACGCTATACCTGTCATGCAGTCTGAGTCATGCTGCCAGGGCCGGGCATCCAGCTCCCAGCCTGAGAGT--------GCCGAGAGCCGAATCCACTGCAGAGCAGGGGTGATAGTCAGGGTCCCACCTCCTCTAT-C-TGTCGTCAATCCAGTGGTGATCTGGGA---------------------------TAAAATCTTGAGAGTCCCATACACG----TGGTCATCACACAACACACCTCACAGGCCAGGCAGGGACACACAGCCCCCTTCCCTCCCTCCCAGGTACCATCATAGCTGCTAGCATGTGACTGAGGGCAGGGTCCCTGGCCCCCGCTGAAGCACTAC-CGCTGGCCAGTGGGCTCAGGCACTTTGGCCTGTTGCTCCTAGGGGTCAACTGTGCCATTCAGCCAA--------
i macNem1.NW_012011533v1    C 0 I 8
s cerAty1.NW_011999477v1      9919475 446 +  10730278 tgggagctgggaggggggtgtgtgtgaggctggactgtgaggtggCCAGAGGCCTAGGAACACCATCCT-TGGCATGCCATACCTGTCATGCAGTCTGAGTCATGCTGCCAGGGCAGGGCATCCAGCTCCCAGCCTGAGAGT--------GCCGAGAGCCGAATCCGCTGCAGAGCAGGGGTGATAGTCAGGGTCCTACGTCCTCTAT-C-TGTCGGCAATCCAGTGGTGATCTAGGA---------------------------TAAAATCTTGAGAGTCCCATacaca----tggtcatcacacaacacacctcacaggccagacagggacacacagcccCCTTCCCTCCCTCCCAGGTACCATCATAGCTGCTAGCATGTGACTGAGGGCAGGGTCCCTGGCCCCCGCTGAAGCACTAC-CGCTGGCCAGCGGGCTCACGCACTTTGGCCTGTTGCTCCTAGGGGTCAACTCTGCCATTCAGCCAA--------
i cerAty1.NW_011999477v1    C 0 I 8
s chlSab2.chr29               3117013 445 +  24206276 TGGGAGCTTGGAGGGGGTCGTGTGTGGGGCTGGATTCTGAGGCGGCCAGAGGTCTAGGAACATCATCCT-GGGCATGCCGTACCTGTCATGCAGTCTGAGTCATGCTGCCAGGGCAGAGTATCCAGCTCCCAGCCTGCGAGT--------GCCGAGAGCCAAATCCACTGCAGAGCGGTGGTGATAGTCGGGGTCCCACCTCCTCTAT-T-TGTT-GCAATCCAGTGGTGATCTAGGA---------------------------TAAAACCTTGAGACTCCCATGCACA----CGGTCATCCCACAACACACTTCACAGGCCAGGCAGGGACACAAAGCCCCCTTCCCTCCCTCCCAGGTACTATCATAGCTGCTAGTGTGTGACCGAAAGCAGGGTCCCTGGCCCCTGCTGAAGCACTAC-TGCCAGCCAGCGGGCTCACACACTTTGGCCTGTTGCTTCTAGGGGTCACCTGTGCTATTCAGCCAA--------
i chlSab2.chr29             I 47 I 15
s manLeu1.NW_012107797v1      1603665 446 +   1678425 TGAGAGCTTGGAGAGGCTTGTGTGTGGGGTTGTACTCTGAGGTGGCCAGAGGCCTAGGAATGTCATCCT-GGGCACACCGTACCTGTTGTGCAGTCTGAGTCATGCTGCCACGGGAGGCCATCCAGCTCCCAGCCTGGGAGT--------GCTGAGAGCCAAATCCACAGCAGAGCAGGGGTGATAGTCAGGGTCTCACCTCTTCTAT-C-TGTCGGCAATTCAGTGGTGATTGAGGA---------------------------TAAAACCTCGAGAGTCCCATACACA----TGATCAACCCACAACACACCTCACAGGCCAGGCAGGGACACACAGCCCTCTTCTCTCCCTCCCAGGTACCATCATAGCTGCTAGCTTGTGACTGAATGCAGGGTCCCTGGCCCCCTCTGATGCACTAC-CGCCAGCCAGCAGAGTCACGCACCTTGGCCTGTTGCTCGTAGAGGTCGCCTCTGCTATTCAGCCAA--------
i manLeu1.NW_012107797v1    C 0 I 8
s canFam3.chr9                5819903 445 -  61074082 AGGAACCTTGGAGGGGGTTGTGCGTGGGGCTGAACTC--AGCCAGCCAGG---CTTGGAACTTTGTCCTGGGGGGTGCCACACTCATTGTCCAACCTGAGCCAAGCTGTCGGGGCAGGGCAGCCAGCTCCCAGCTCAGGAGC--------GCTGGGAACCGAGGCCATGATAGGGCAGAGGAG---GTCACAGCCCCACCTCCTCTATGG-TGCCAGCAGTTGAGCAGCAATTTGGGGCGAAGGCTCTGGT---TTGCTGATTTCTGAAAGCTGGAGGGCCCTGTCCACA----GTGT------------------ACGGGCGAGGTAGGATCACGCAGCCTGTTCCTCTCCCTCCT-GGTATGGTCATGCTTGTGATGGCACTACAAACGACAGTGTCCTCTGCCCCAGATGAAGCACCGTAAGCCAGCCCTCAGGCTCCCGGGCCTAGGCCTGGTGCTCCT-GGGGTGACCTACACTTTTCAGCCAA--------
i canFam3.chr9              C 0 I 8
s dasNov3.JH564958             396523 469 -    584178 TAGGAGCTTGGAGGAGGTTGTGTGTGGGGCTTGACTCTGAGGAGGCCACAGGCCTTTGAAGTTCATCTT-GGGGGTGCCACACCCATCCCCTAATCCACACCATGCTGCC-GGGCAGGACATCCTTCTCCCAGCCTGGGAGCCTGGGAGGCCTGGGAGCCAAATCCACTGTAGGGCAGGAG---CAGTCAGAGTCCCTCCTCCGCTAT-CATGCCAGCAA-CCAACAGTTATCTGAGGGGACGGCACTGGTTGGTTGATGATTTCTGAAAGCCTAAGGGTTCTGTGCACACCATCGATCGGCCCATAACACGCCTCACCT---------GGACAGACCGCCCCTTCCCCTATTTCCTTGTTATTGTCA-ACCTGGGGGTGTGTGACTGAAGGCAGCGTCCTCAGCCCCCAGTGAAGCACCAC-CACCAGCCAGCAGGCTCCTGGACTTTGG-CTGTTGC-CCTAGGGGTGACCTACGCTTTTCAGCCAA--------
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3072807 19268 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=-2429.000000
s hg38.chr15_KI270850v1_alt    126122  6 +    430880 --------------TAGTG-C
s panPan2.chr15              23127238  7 -  99763055 --------------CAGTGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        49246  7 -    378907 --------------CAGTGCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25640439  7 - 121039945 --------------CAGTCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113461234  6 - 169600520 --------------CAGTGC-
i rheMac8.chr7              I 8 I 1
s macFas5.chr7              106531307  6 - 171882078 --------------CAGTGC-
i macFas5.chr7              I 8 I 1
s macNem1.NW_012011533v1      4001355  6 +   4820037 --------------CAGTGC-
i macNem1.NW_012011533v1    I 8 I 1
s cerAty1.NW_011999477v1      9919929  6 +  10730278 --------------CAGTGC-
i cerAty1.NW_011999477v1    I 8 I 1
s manLeu1.NW_012107797v1      1604119  6 +   1678425 --------------CAGTGC-
i manLeu1.NW_012107797v1    I 8 I 1
s canFam3.chr9                5820356  7 -  61074082 --------------CAGTGTC
i canFam3.chr9              I 8 I 30
s dasNov3.JH564958             396992 18 -    584178 CTGGACGACCATGTCTGC---
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3072807 19268 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e chlSab2.chr29               3117458 15 +  24206276 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=2255823.000000
s hg38.chr15_KI270850v1_alt    126128 589 +    430880 ----------------------------TGCTGGCCCAGCTGAGC-------TCCACCTAGAGAGCTCACTTCCCTTT-----CCTGCCGCGGAGTCTCCCTCTTCTGCTTTT-CCCAGCAGGAAGGGCCCAGCCTCACCTATGTAACCTGCAG-----CCCCCCGC------CAACCAGTTGAGGCTGCCCTGTT-AGACTTAGAAGTCTATGGCCAATGGCATCTGGC-TACCTGCCCTCCCTGCCTTCCCCAGGGTCCC-TCAGAGGA-CCCTGGGCTTTCTGATGGCCCAGAGGGGCCTCT-GGCATTCACTCCAGCCAGCCATCCCTTAT-AGCTCCACCATTTTGGTTCAATCAGTGTTCCT-----------TCTCTATCAGGTCTGGTGGCTGTTGGATGGG--------------GCTCT------------CCAA-GCAAGAGGTGGCCCTGGGCC-GTGAGTTGGAAGACAGGGTGACCAGAGAA-----------GAGAGAAGCCCGAGGGGGCTGAGCATT-CATCT--GAACTA--------TGGGTGGACTGCCTGGGTGCCATGAAAGAGGCCAGCGTGTGTGGGGTGGGGAGGGCCGCCGCAGTCCCCAGGC---ACTACCTAT-GAAGCTCCGGCTTCTCCC----TCCA--TC---TTCCTCC--C---CTTTCCCTTCCAGCCC--CTCTTTTCCAGGAACC-TTGC--CA--
s panPan2.chr15              23127245 593 -  99763055 ----------------------------TGCTGGCCCAGCTGAGC-------TCTGCCTAGTGAGCCCACCTGCCTCT-----CCTGCCACAGACTCTCCCTCTTCTGCTTTT-CCCAGCAGGAAGGACCCAGCCTCAGCTATGAAACTTGCAG-----CCCCCCTCACCCCGCAACCAGCTGAGGCTCCCCTCTT-AGACTTATAAGTCTATGGCCAGTGGCATCCAGC-TACCTGCCCTCCCTGCCTTCCCCAGGGTCCCTTCAGAGGA-CCCTGGACATTCTCACCA-CCAGAGGGGCCTCT-GGCACTCACTCCAGCCATCCATCCCTTAT-AGCTTCACCATTTTGGTTCAAGCAGTGTTCCT---------------TATCAGGCCAGGTGGCTGTTGGGTGGG--------------GCTCC------------CCAA-GCAAGAGGTGGCCCTGGGCCAGTGGGTTGGAAGGCAGGGTGACCAGAGAA-----------GAGAGAAGCCCAAAGCGGCTGAGCATT-GGTCT--GAAGTG--------TGGGTGCACTGCCTGGGTGCCATGGGAGAGGCCAGTGTGTGTGAGCTGGGGAGGGCTGCCGCAGCCCCCAGGC---ACTACATGT-GAAGCTCTGGCTTCTCCC----TCCA--TC---TTCCTCC--C---CTTTCCCTTCCAGTCC--CTGTTTTCCAGGAACCTTTGC--TA--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        49253 596 -    378907 ----------------------------TGCTGGCCCAGCTGAGC-------TCCGCCTAGAGAGCTCACTTCCCTTT-----CCTGCCACGGAGTCTCCCTCTTCTGCTTTT-CCCAGCAGGAAGGGCCCAGCCTCACCTATGTAACCTGCAG-----CCCCCCGC------CAACCAGTTGAGGCTCCCCTGTT-AGACTTAGAAGTCTATGGCCAATGGCATCCGGC-TACCTGCCCTCCCTGCCTTCCCCAGGGTCCC-TCAGAGGA-CCCTGGGGTTTCTGATGGCCCAGAGGGGCCTCT-GGCATTCACTCCAGCCAGCCATCCCTTAT-AGCTCCACCATTTTGGTTCAATCAGTGTTCCT-----------TCTCTATCAGGTCTGGTGGCTGTTGGATGGG--------------GCTCT------------CCAA-GCAAGAGGTGGCCCTGGGCCAGTGGGTTGGAAGACATGGGGACCACAGAA-----------GAGGGAAGCCCGAGGGGGCTG-GCGTT-GGTCT--GAACTGTGGGTGGATGGGTGGATTGCCTGGGTTCCGTGAGACAGGCCAGCATGTGTGGGGTAGGGAGGGC-GCCGCCGTCCCCAGGC---ACTACCTAT-GAAGCTCTGGCTTCTCCC----TCCA--TC---TTCCTCC--C---CTTTCCTTTCCAGCCC--CTCTTTTCCAGGAACC-TTGC--CA--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25640446 581 - 121039945 ----------------------------TGCTGGCCCAGCTGAGC-------TCCACCTAGCAAGCCCACCCACCTCC-----TCTGCCATGGACTCTCCCCCTTCTGCTTTT-CTCAGCAGGAAGGGCCCAGCCTCACCTATGTGACCTGCAG-----CCCCTCG-------CAACCAGCTGAGGATCCCCTCTT-AGACCT--AAGTCTATGGCCAGTGGCAT---------ATGCCCTCCCTGCCTTCCCCAGGGTCCTTTCAGAGGG-TCCTGGGCTTTCTGACCACCCAGAGGAGCCTCT-GGCACTCACTCCAGCCATCCATCCCTTTT-AGCTTCACCATCCTGGGTAAAACAGTGTTCCT-----------TCTCTATCAGGCCTGGTGGCTGTTGGGTGGG--------------GATCC------------CCAAGGTGAGAGGTGGCGCTGGGCCAGTGGGTTGGAAGGGAGGGTGACCAGAGAA-----------GAGGGAAGCCTGAGAGGGCTGAGCATT-GGTTT--GAACTG--------TGGGTGCACTGCCTGGGTGCCGTGGGAGATGCCAGTGTGTGTGGGCTGGGGAGGGCCACTGCAGCCCCCAGGC---ACTACCTGT-GAAGCTCCGGCTCCTCCC----TCCA--TC---TTCCTCC--C---CTTTTCCTTCCAGCCC--CTCTTTTCCAGGAACC-TTGC--CA--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113461241 592 - 169600520 ----------------------------TGCTGGCCCAGCTGACC-------TCCGCCTAGTGAACACACCTGCCTCT-----CCTGCCATGGACTCTCCCTCTTCTGCTTTT-CCCAGCAGGAAGGGCCCAGCCTCACCTACGAAACCTGTAGCATTCCCACCCAG------CAACCAGCTGAGGCTCCCCTCTTAAGACTTACAAGTCTATGGCCAGTGGCATCCAGC-TACCTGCCCTCCCTGCCTTCCCCAGGCTCCCTTCAGAGGA-CCCTGGTCTTTCTGACCACTCAAAGGGGCCTCT-GGCACATACTCCAGCCATCCATCCC-TTATAGCTTCACCATTTTGGTTCAAGCAGTGTTCCT---------------TATCAGGCCAGGTGGCAGTTGGGTGGG--------------GGTCC------------CCAA-GCAAGAGGTGGCCCT-GGCCAGTGGGTTGGAAGACAGGGTGACCAGAGAA-----------GACAGAAGCCCAAGGGGGCTGAGCATT-GGTCT--GAACTG--------TGGGTGCACTGCCTGTGTGCCATGGGTGAGGCCAGCGTATGTGGGCTGGGGAGGGCTGCCACAG-CCCCAGGC---ACTACCTGT-GAAGCTCTGGCTCCTCCC----TCCA--TC---TTCCTCC--C---CTTTCCCTTCTGGCCC--CTCTTTTCTAGGAACCTTTGC--CA--
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              106531314 587 - 171882078 ----------------------------TCCTGGCCCAGCCAAAT-------CCTGCCTAGCGAGCCCACCTGCCTGT-----CCTGCCACGGACTCTCCCTCTTCTGCTTTT-CCCATCATAAAGGGCCCAGCGTCACCTATGCAACCTGCAG-----CCCCCTGC------CTACCAGTTGAGGCTCCCCTTTT-GGGCTTATAACTGTATGGCCGGTGGCATCCAGC-TACCTGCCCTCCCAGCCTTCCCCAGGGTC-CTTCAGAGGA-CCCTGAGCTTTCTGCCCACCCAGAGGGACCTCT-GGTGCTCACTCCAGCCAGCCATCCCCTTATAGCTTCACTATTTTGTTTCAAGCAGTGTTCCT-----------TCTCTATGAGGAGTGGTGGCTGTTGGGTGGG--------------GCTCC------------CCAA-GCAAGAGGTGGCCCTGGGCCAGTGGGTTGGA--AGACGGTGACCAGGGAA-----------GAGGGAAGTCCT-GGGGGCTG-GCATT-GGTCT--GAACTG--------TGGGTGGACTGCCTGGGTGCCATGAGAGAGGTCAGCGTGTGTGGGGTGGGGAGGGCCGCCGCAGCCCCCGGGC---ACTTCCTAT-GAAGCTCTGGCTTCTCCC----TCCA--TC---TTCCTCC--C---CTTTCCCTTCCAGCCT--CTCTTTTCCAGGAACC-TTGC--CA--
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011533v1      4001362 578 +   4820037 ----------------------------TGTTGGCCCAGCTGAGC-------TCCGCCTGGCGAGCCCACCCACCTCC-----CCTGTCAGAGACTCTCCATCTTCTGCTTTT-CCCAGTAGGAAAGGCTCAGCCTCACCTATGCGGCCTGCAG-----ACCCC--A------TAACCAGCTGAGGCTCCCCTCTT-AGATTTATAAGTCTATGGCCAGTGGCAT---------ATGCCCTTCCTGCCTTCCCCAGGGTCTTTTCAGAGGC-TCTTGGGCTTTCTGACCACCCAGAGGGGCCTCT-GGCACTCACTCCAGCTGTCCATCCCTTTA-AGGTTCACCATCCTGGGTCAAGCAGTGTTCTT-----------TCTCTGTCAGGCCTGTTGGCTGTTGGGTGGA--------------GCTTG------------CCAAGGCAAGAGGTGGCCCGGGGCCAGTGGGTTTGAAGAGAGGGTGACCAGAGAA-----------GAGGGAAGCCTGAGGGGGCTGAGCATT-GGTCT--GAATTG--------TGGGTGCACTGCCTGGGTGTCATGGGAGAAGCCAGTGTGTGTGGGCTGGGGAGGGCCGCTGCAGTCCCCAGGC---ACTACCTGT-GAAGCTCTGGCTCCTCCC----------TC---TTCCTCC--C---CTTTCCCTTCGAGCCC--CTCTTTTCCAGGAACC-TTGC--CA--
i macNem1.NW_012011533v1    I 1 I 1273
s cerAty1.NW_011999477v1      9919936 578 +  10730278 ----------------------------TGCTGGCTCAGCTGAGC-------TCTGACTAGCGAACCCACCAGCCTCC-----CCTGTCACAGACTGTCCCTCTTCTGCTTTT-CCCAGCAGGAAGGACTCAGCCTCACCTATGTGACCTGCAG-----ATCCT--G------CAACCAGCTGAGGCTCCCCTCTT-AGACTTATAAGTCTATGGCCAGTGGCCT---------ATGCCCTTCCTGCCTCCCCCAGGGTCTTTTCAGAGGG-TCCTGGGCTTACTGACCACCCAGAGGGGCCTCT-GGCACTCACTCCAGCCATTCATTCCTTTA-AGGTTCACCATCCTGGGTCAAGCAGTGTTCTT-----------TCTCTGTCAGGCCTGTTGGCTGTTGAGTGGG--------------GCTCC------------CCAAGGCGAGAGGTGGCCCTGGGCCAGTGGGTTGGAAGAGAGGGTGACTAGAGAA-----------GAGGGAAGCCTGAGGGGACTGAGCATT-GGTCT--GAATTG--------TGGGTGCACTGCCTGGGTGTCATGGGAGAGGCCAGTGTGTGGGGGCTGGGGAGGGCTGCCACAGTCCCCAGGC---ACTAACTGC-AGAGCTCTGGCTCCTCCA----------TC---TTCCTTC--C---CTTTTCCTTCCAGTCC--CTCTTTTCCAGGGACC-TTGC--CA--
i cerAty1.NW_011999477v1    I 1 C 0
s chlSab2.chr29               3117473 585 +  24206276 ----------------------------TGCTGGCCTGGCTGAGC-------TCTGTCCAGTGAGCCTGCCCGCCTCT-----CCTGCCACAGACTCTCCCTCTTCTGCTTTT-TTCTGCAGGAAGGGCCCAGCCTCACCTATGTGACCTGCAG-----TCCCC---------CAACAAGCTGAGGCTTCCCTCTT-AGACTTACAAATCTATGGCCAGTGGCATCTGGC-TGCCTGCCCTTCTTGCCTACCCAACGGTCCTCTCAGAGGG-TCCTGGGCTTTCTGATGGCCCAGAGGGGCCTCC-GGCGCTCAATCCAACCATCCATCCCTTTT-AGCGTCATCATTCTGGTTCAAGCAGTATTCCT-----------TCCCTATCAGGCCTGGTGGCTGTTGCTTGGG--------------GCTCC------------CCAAGGTGAGGGGTGGCCCTGGGCCAGTGTGTTGGAAGACAGGGTAACCAGAGAA-----------AAGGGAAGCCTGAGGGGACTGAGCATT-GGTCT--GAACTG--------TGGGTGCACTGCCTGGATGCCGTGGGAGAG----GCGTATGTGGGGTGTGGAGGGCCGCTGCAGCCCCCAGGC---ACTACCTGT-GAAGCTCCGGCTcttcct----tcca--tc---ttccttc--c---ttttcccttccAGCCC----CTTTTCCAGGAACC-TTACTACA--
i chlSab2.chr29             I 15 C 0
s manLeu1.NW_012107797v1      1604126 588 +   1678425 ----------------------------TGCTGGCCCGGCTGAGC-------TCCGCCCAGCAAGCCCGCCCACCTTC-----CTTGCCATGGAATCTCCCTCTTCTGCTTTT-CCCAGCAGGAAGGGCCCAGCCTCACTTATGTAACCTGCAA------CCCC---------CAACAAGCTGAGGCTCCCCTCTT-AGACTTATAAGTCTATAGCCAGTGGCATCCAGC-TGCCTGCCCTCCCTGCCTTCCCCAGGGTCCTTTCAGAGGG-TCCTGGGCTTTCTGACTGCCCAGAGGGGGCTCC-GGCGATCACCCCAGCCATCCATCCCTTTT-AACTTCATAGTCCTGGTGCAAGCAGTGTTCCT-----------TCTCTATCAGGCCTTGTGGCTGTTGTGTTGG--------------GCTCC------------CAAACACGAGAGGTGGCCCAGGGCCAGTGGGTTGGAAGACAGGGTGACCAGAGAA-----------GTGGGAAGCCCGATGGG-CTGAGCACTGGGTCT--GAATGG--------TGGGTGCACTGCCTGGGTGCTGTGGAAGAGGCCAGCGTGCGTGGGTTGGGGAGGGCCGCTGCAGCCCCCAGGC---ACTACCTGT-GAAGCTCCGGCTCCTCCC----TCCA--TC---TTCCTCC--C---CTCTCCCCTTCAGCCC--CTCTTTTCCAGGAACC-TTGC--CA--
i manLeu1.NW_012107797v1    I 1 C 0
s canFam3.chr9                5820393 624 -  61074082 ----------------------------TCCCACCCTGGTTGGGCCGCA-CATGCGCCCAGC-AACCCACCTGCCACTCTGTCCCTGCCGCTGACTCTCACTCTTCTGCTTTTCCCCAGCAGGAAGGGCCCAGCCTCACCTACGCGACCTGTGG-----TCCCC---------CGGCCAGCTGAGGCTCCCCTCTT-AGACTTATAAGCCTGTGGCCGCTGGCATCCGGCTTGCCTGACCTCCCTGCCT-CCCCAGGGTCCCTTCTGAGGA-CTCCGGGCTTTCTGCCCACCCAGAGGGGCCTCCAGGTGCCCCCTCCAGCCAT-----CCTTTT-AGCTTTGCCCTCCTGGTTCAAACACTGTTCTTTCTCCTGTCTCTCTCCACGAGGACTGGTGGCTGTGGCATGGG--------------GCATCAGGACCCACATTCCGAGACTAGGGCTGGTCCTGGGCCAGTACATTGGAAGACATGGGGGCCAGAAAA-----------GAGGGAAGGCAGAGGGG-CCGAGCATG-TGCCT-GGAGCTG--------TGGGTGCACTGCCTG-GTGGTGTATGAGAGACCGGCGTGCGTGGCAGAGGGAGGGCCGCCCCGGCCTCCATCC---AAGACCCCTGGAAGCTGTGGCCCCCACC----CACC--TCCAGTTCCTCCTAC---CTTCCCTTTCTCTCTC--CTCCATTCCAGAACCC-TTGC--CC--
i canFam3.chr9              I 30 I 1
s dasNov3.JH564958             397010 671 -    584178 TGACCTGGGCACGTCACCTTTCTCTGAGTTCTGCCCCAGCTGGGCCACAGAATCCACCCAGCTAAGCCATTTGCCCCTCTGCCCCTGCCACTGACTCTTGCTCTTCTGCTTTTCCCCAGCAGGAAGGGCCCAGCCTCACCTACGCGACCTGCAG-----TCCCC---------CGACCAGCTGAGGCTCCCCTCTT-AGACTTATAAG--TGTGGCCACTGACAT-CGGC-TGCTTGTCCTCCTTGCCT-CTCCAGGGTCCCTTCTGAGGACCCCTGGGCCTTCTGACCACCAAGAGGGGCCTCC-AGCGCTCCCTCCAGCCA----TCCCTTTT-AGCTTCGCCCTCC-AGTTCAAGCAGTGTTCTC----CTGCCTTTCTCCATCAGGCCTGGT-GCTGTTGCATGGGCCTTGTGATCCCATACTCC------------CTGAGGCTAGGGGTGGCCCTGGGCCAGTGGATCGGAAGACATGGTGGTCAGAGAAGAGGGAGCCAGGAGGGAAGCCAGAGGGGGCAGAGCATG-TGTTCTGGAGCAG--------TGGGTGCACTGCCTGGGTGGTGTGTGAGAGACTGGTGTGCGTGGTGGTGGAGGGGCCAAACCAACCTCCACCCCAGATTCCCTGT-GAAGCTCTGGCCCCTGCCCATCTCCAGCTC---CTCCTCT--CCATCTTCCCTTTCTTGTCTATCTTTTTTCCTGAAACT-TTGC--CTCA
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3072807 19268 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=221576.000000
s hg38.chr15_KI270850v1_alt    126717 79 +    430880 TGCCCACACCTACGCCCTCCCC----TCCCCGGCCCT-CCACAGCTGCTGCAGCGCACCCATACT---CTGCACTTGCCTCACCAGC
s panPan2.chr15              23127838 80 -  99763055 CACCCGCACCTGCGCGCTCCCC----TCCCCGGCCCTCCCACAGCTGCTGTGACATGCCCGTGCT---CTGCGCTTGCATCACCAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        49849 80 -    378907 TGCCCACACCTACGCCCTCCCC----TCCCCGGCCCTCCCACAGCTGCTGCAGCGCACCCATACT---CTGCACTTGCCTCAGCAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25641027 60 - 121039945 CACCTGCACCTGCGTCCTCCCC----TCCCCAGCCCT--------------------CCCGCACT---CTGTGCTTGCCTCACCAgc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113461833 80 - 169600520 CACCCGCACCTGTGCCCTCCCC----TCCCCAGCCCTCCCACAGCTGCTGTGGCGCGCCAGTGCT---CTGCGCTTGCCTCACCAGc
i rheMac8.chr7              C 0 I 5
s macFas5.chr7              106531901 80 - 171882078 TGCCCACACTTACACTCTCCCC----TTCCCGGCCCTCTCGCAGCTGCTACGGTGCACCCATGCT---CTGCACTTGCCTCACCAGC
i macFas5.chr7              C 0 I 1
s cerAty1.NW_011999477v1      9920514 80 +  10730278 CACCTGCACCTGTGCCCTCCCC----TCCCCGGCCCTTCCACAGCTGCTGCAGCACACCCCTGCT---CTGTGCTTGCCTCACCAGC
i cerAty1.NW_011999477v1    C 0 I 5
s chlSab2.chr29               3118058 80 +  24206276 CACCCGCACCTGCGCCCTCCCC----TCCCTGGCCCTCACACAGCTCTTGCAGTGTGCCCATGCT---CTGCGCTTGCCTCACCAGC
i chlSab2.chr29             C 0 I 9
s manLeu1.NW_012107797v1      1604714 80 +   1678425 CACCCGCACCTGCGCCCTCCCC----TCCCCAACCCTCCCACAGCTGCTGTGGCACACCTGTGCT---CTGCACTTACCTCACCAGc
i manLeu1.NW_012107797v1    C 0 I 5
s canFam3.chr9                5821018 74 -  61074082 CACCCTCAGCTTTGTTTTCGCC------CCCTGTCCTCCC-------CTCCTACCCCACCGGGCTTGGCTGCCCTTGCCTTACCAGT
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958             397681 77 -    584178 CACCCGCACCTGTGTCTTCTTCCCATTCCCATCCCCTCTCACCACCGCCGTAGCTTGG----------CTGCTCTTGCCTTACCAGC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3072807 19268 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e macNem1.NW_012011533v1      4001940 1273 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=24717.000000
s hg38.chr15_KI270850v1_alt    126796 24 +    430880 TCTG-----GCTTTTCTCTAACCCGTTTT
s panPan2.chr15              23127918 29 -  99763055 TCTCTGCTTGCTTTTCTCTCTCCTATTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        49929 24 -    378907 TCTG-----GCTTTTCTCTAACCCGTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25641087 29 - 121039945 tctctgctcacttctctctgctcactttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113461918 24 - 169600520 -----gcttgcttttctctctcctgtttt
i rheMac8.chr7              I 5 C 0
s macFas5.chr7              106531982 23 - 171882078 ------CTGGCTTTTCTCTAACCTGTTTT
i macFas5.chr7              I 1 C 0
s cerAty1.NW_011999477v1      9920599 23 +  10730278 -----GCTCACTTTTCTCTC-CCCATTTT
i cerAty1.NW_011999477v1    I 5 C 0
s manLeu1.NW_012107797v1      1604799 24 +   1678425 -----gctcacttttctccctcctgtttt
i manLeu1.NW_012107797v1    I 5 C 0
s canFam3.chr9                5821092 24 -  61074082 TCTCTTCCTCCTTCTCTCCGTTCT-----
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             397758 22 -    584178 --TCTCTCCCCTTTTCTCTCTTCC-----
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3072807 19268 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e chlSab2.chr29               3118138  9 +  24206276 I
e macNem1.NW_012011533v1      4001940 1273 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=650142.000000
s hg38.chr15_KI270850v1_alt    126820 164 +    430880 CTCTCTGCTTTCTCTCCAACTGCCAGCTGATTGGGTCAGGCAAGTCCATCCCATCCGGGGAGCCCCAGGCCCCACTTCGACCTCTAAACAGATTCCTCCTCTT-CTCAGAGACCTCCCTTTCCAAGCCTGCCTGGGTGGGTGTCCTGTGACTTGACAGTGGCTCC-
s panPan2.chr15              23127947 160 -  99763055 CTCTCTGC-TTCTCTCCAACTGCCAACTGATTGGGTCAGGCAAGTCCATCCCATCCTGAGAGCTCCA-GCCCCACTTCAACCTCTAAAGAGA-TCCTCCTCTT-CTCAGAGACCTCCCTTTCCAAGCCTGCCTGGGCGGGTGTCCTGTGACTTGACAGTGGCT-C-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        49953 164 -    378907 CTCTCTGCTTTCTCTCCAACTGCCAGCTGATCGAATCAGGCAAGTCCATCCTGTCCTGAGAGCCCCAGGCCCCACTTCGACCTCTAAACAGATTCCTCCTCTT-CTCAGAGACCTCCCTTTCCAAGCCTGCCTGGGTGGGTGTCCTGTGACTTGACAGTGGCTCC-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25641116 161 - 121039945 ctctctgctttctctcCAACTGCCAGCTGATCCAGTCAGGCAAGTCCATCCCGTCCTGAGAGCCCCAGGCCCCACTTTGACCTCTAAACAGA-TCCTCCTCTT-CTCGGAGGCCTCTCTTTCCAAGCCTGCCTGGGCGGGTGTCCTG-GACTTGACAGTGGCT-C-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113461942 159 - 169600520 ctctctgc-ttctctctGACTGCCAGCTGATTGGGTCAGGCAAGTCCATCCCATCCTGAGAGCCCCA-GCCACACTTTGACTTCTAAACAGAT-CCTCCTCTT-CTCGGAGGCCTCCCTTTCCAAGCCTG-CGGGGCAGGTGTCCTGTGACTTGACAGTGGCT-C-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106532005 162 - 171882078 CTCTCTGCGTTCTCTCCAA-TGCCAGCTGATTGGGTCAGGCAAGTCCATCCCGTCCTGAGAGCCCCAGGTCCCCCTTCGACCTCTGAACAGATCCCTCCTCTT-CTCAGAGATTTCCCTTTCCAAGGCTGCCTGGGCGGGTGTCCTGTGACTTGACAGTGGCT-C-
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9920622 162 +  10730278 CTCTCTGCTTTCTCTCCAACTGCCAGCTGATTGGGTCAGACAAATCCATCCTGTCCTGAGAGCCCCAGGCCCCACTTTGACCTCTAAACAGAT-CCTCCTCTT-CTCGGAGGCCTCCCTTTCCAAGCCTGCCTGGGCGGGTGTCCTGTGACTTGACAGTGGCT-C-
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3118147 162 +  24206276 CTTTCTGC-TTCTCTCGAACTGCCCGCTGATCAGGTCAGGCAAGTCCATCCTGTCCTGAGAGTCCCAGGCCCTGCTTCGACCTCTAAACAGATCTCTCCTCTT-CTCGGAGGCCTCCCTTTCCAAGCCTGCCTGTGCAGGTGTCCTGTGACTTGACAGTGGAT-C-
i chlSab2.chr29             I 9 C 0
s manLeu1.NW_012107797v1      1604823 163 +   1678425 ctctctgctttctctcCAACTGCCAGCCGATCGGGTCCGGCAAGTCCATCCCATCCTCAGAG-CCCAGGCACCCCTTTGACCTCTAAACAGATCCCTCCTCTT-CTCAGAAGCCTCCCTTTCCAAGCCTGCCTGAGTGGGTGTTCTGTGACTCGACAGTGGCTCC-
i manLeu1.NW_012107797v1    C 0 C 0
s canFam3.chr9                5821116 163 -  61074082 CTTTTTGCTTTCTCTCCAACTGCCAGCCGATCGGGTCAGGCAAGTCCGTCCCGTCCTGAGAGCCCCAGGCCCCCCTTCGACCTCTAACCAGATCCCTCTATTC-CTCGGAGACCTCCCTTTCCAAGCCTGCCTGGACGGCTGTTCTGTGACTTGACAGTGGCT-C-
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             397780 165 -    584178 CTTTTCACTTTCTCTCCAACTGCCAGCCGATCGGGTCAGGCAAGTCCATCCCGTCCTGAGAGCCCCAGGCCCCCCTTCGACCTCTAACCAGACCCCTCCTATTCCTCGGAGACCTCCCTTTTCAAGCCTGCCTGGATGGCTGTTCTGTGACTTGACAGTGGCT-CC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3072807 19268 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e macNem1.NW_012011533v1      4001940 1273 +   4820037 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=350772.000000
s hg38.chr15_KI270850v1_alt    126984 85 +    430880 CC-CAGCCCCAAAGCCAGCCCCCTTCTTCTGTGACTTAGTCTGTTGTAGTGGTGAGCTGACACGTCCAGGTTTGACCGTTGCTG-AA
s panPan2.chr15              23128107 86 -  99763055 CC-CAGCCCCAAAGCCAGCACCCTTCATCGGTGACTTAGTCTGTTGTAGTGGTGAGCTGACACATCCAGGTTTGACCATTGCTGAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        50117 86 -    378907 CC-CAGCCCCAAAGCCAGCCCCCTTCATCTGTGACTTAGTCTGTTGTAGCGGTGAGCTGACACGTCCAGGTGTGACCGTTGCTGAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25641277 85 - 121039945 CC-CAG-CCCAAAGCCAGCCCCCTTCATCTGTGACTTAGCCTGTCGTAGTGGTGAGCTGACACATCTAGGTGTGACCATTGCTGAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113462101 85 - 169600520 CC-CAGCCCCAAAGCCAGCCCCCTTCATCTGTGGCTTAGTCTGTTGTAGTGCTGAGCTGACACATCCAGGTGTGACCGTTCCTGAA-
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              106532167 86 - 171882078 CCGCAGCCCCAGAGCCAGCCCCCTTCATCTGTGACTTAGTCTGTTGTAGTGGTGAGCTGCCACATCCAGCTGTGACCGTTGCTGAA-
i macFas5.chr7              C 0 I 1
s cerAty1.NW_011999477v1      9920784 80 +  10730278 CC-CAGCC---AAACCAG-CCCCTTTATGTGTGACTTAGTCTGTTGTAGTGCTG-GCTGACACATACCGGTGTGACCGTTCCTGAA-
i cerAty1.NW_011999477v1    C 0 I 108
s chlSab2.chr29               3118309 78 +  24206276 CC-CAGTCCCAAAG-------CCTTCATCTGTGACTTAGTCTGTTGTAGTGCTGAGCTGACACTTCCAGGTGTGACCATTGCTGAA-
i chlSab2.chr29             C 0 I 1
s manLeu1.NW_012107797v1      1604986 85 +   1678425 CC-CAGCCCCAAAGCCAGCCCCCTACATCTGTGACTTAGTCTGTTGTAGTGGTGAGCGGACACATCCAGGTGTGACCATTGCTGAA-
i manLeu1.NW_012107797v1    C 0 I 1
s aotNan1.NW_018511953v1      3092075 78 +   3745603 CC-CAGCCCCAAAGGCAGCCCCCTTCATCTGTGACTTAGTCTGTTGTAGTGGTGAGCTGACACATCCAGGTGTGACCAT--------
i aotNan1.NW_018511953v1    I 19268 C 0
s canFam3.chr9                5821279 84 -  61074082 CC-CAGCCCCAAAGCC-TCCCCCTTCATCTGTGACTTAGTCTGTTGTAGTGGTGAGCTGACACATCCAGGCGTGA-TATTGGTGAAA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             397945 84 -    584178 CC-TACCCCCCAAACT-TCTGCCTTCTTCTGTGACTTAGTCTGTTGTAGAGGTGAGCTGACACATCCAGGCGTGA-TGTTGGTGAAA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e macNem1.NW_012011533v1      4001940 1273 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=74326.000000
s hg38.chr15_KI270850v1_alt    127069 24 +    430880 ACTTGTGCCCCCTCTGTGGTA-TGC
s panPan2.chr15              23128193 24 -  99763055 ACTTGTGGCCCCTCTGTGGTA-TGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        50203 24 -    378907 ACTTGTGCCCCCTCTGTGGTA-TGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25641362 21 - 121039945 ACTTGTGCCCC--CTGTGGTA-TG-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113462187 23 - 169600520 ACTTGTG-CCCCTCTGTGGTA-TGC
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              106532254 24 - 171882078 ACTTGTGCCCCCTCTGTGGTA-TGC
i macFas5.chr7              I 1 C 0
s chlSab2.chr29               3118388 24 +  24206276 ACTTGTGTCCCCTCTGTGGTA-TGC
i chlSab2.chr29             I 1 C 0
s manLeu1.NW_012107797v1      1605072 24 +   1678425 ACTTGTGCCCACTCTGTGGTA-CGC
i manLeu1.NW_012107797v1    I 1 C 0
s aotNan1.NW_018511953v1      3092153 17 +   3745603 -------CCCCCTCTGTGGCA-CGC
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5821363 24 -  61074082 ACTTGTG-CCCCTCTGTGGTATTGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             398029 23 -    584178 ACTTGTGCCCCCTC--TGGTACTGC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9920864 108 +  10730278 I
e macNem1.NW_012011533v1      4001940 1273 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=164268.000000
s hg38.chr15_KI270850v1_alt    127093 30 +    430880 CCCTGCCCTGTTCTATAAATAGCTATAAAT
s panPan2.chr15              23128217 30 -  99763055 CCCTGCCCTGTTCTATAAATAGCTATAAAT
i panPan2.chr15             C 0 T 46458
s gorGor5.CYUI01015946v1        50227 30 -    378907 CCCTGCCCTGTTCTATAAATAGCTATAAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25641383 30 - 121039945 CCCTGCCCTGTTCTACAAatatctataaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113462210 30 - 169600520 CCCTGCCCTGTTCTATAAATAGCTATAAAT
i rheMac8.chr7              C 0 I 15
s macFas5.chr7              106532278 30 - 171882078 CCCTGCCCTGTTCTATAAATAGCTATAAAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9920972 30 +  10730278 CCCTGCCCTGTTCTATAAATATCTATAAAT
i cerAty1.NW_011999477v1    I 108 C 0
s chlSab2.chr29               3118412 30 +  24206276 CCCTGCCCTGTTCtataaatagctataaat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1605096 30 +   1678425 CCCTGCCCTGGTCtataaatatctataaat
i manLeu1.NW_012107797v1    C 0 C 0
s aotNan1.NW_018511953v1      3092170 30 +   3745603 CCCTGCCCTGTTCTAGAAATATCTATAAAT
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5821387 30 -  61074082 TCCTATCCCATTCTATAAATAACTATAAAT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             398052 30 -    584178 TCCTGCCCTGTTCtataaatatctataaat
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e macNem1.NW_012011533v1      4001940 1273 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=-43.000000
s hg38.chr15_KI270850v1_alt    127123 4 +    430880 TCTC
s panPan2.chr15              23081789 4 -  99763055 accc
i panPan2.chr15             T 46458 I 19
s gorGor5.CYUI01015946v1        50257 3 -    378907 TCT-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25641413 4 - 121039945 actc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106532308 2 - 171882078 --TC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9921002 4 +  10730278 ACTC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3118442 4 +  24206276 actc
i chlSab2.chr29             C 0 I 39
s manLeu1.NW_012107797v1      1605126 3 +   1678425 acc-
i manLeu1.NW_012107797v1    C 0 C 0
s aotNan1.NW_018511953v1      3092200 4 +   3745603 ACTC
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             398082 0 -    584178 C
e canFam3.chr9                5821417 0 -  61074082 C
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e macNem1.NW_012011533v1      4001940 1273 +   4820037 I
e rheMac8.chr7              113462240 15 - 169600520 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=546.000000
s hg38.chr15_KI270850v1_alt    127127 1 +    430880 T
s macFas5.chr7              106532310 1 - 171882078 T
i macFas5.chr7              C 0 I 6
s cerAty1.NW_011999477v1      9921006 1 +  10730278 T
i cerAty1.NW_011999477v1    C 0 I 163
s manLeu1.NW_012107797v1      1605129 1 +   1678425 t
i manLeu1.NW_012107797v1    C 0 I 3
e aotNan1.NW_018511953v1      3092204 0 +   3745603 C
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             398082 0 -    584178 C
e canFam3.chr9                5821417 0 -  61074082 C
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23081793 19 -  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e chlSab2.chr29               3118446 39 +  24206276 I
e macNem1.NW_012011533v1      4001940 1273 +   4820037 I
e rheMac8.chr7              113462240 15 - 169600520 I
e nomLeu3.chr6               25641417 0 - 121039945 C
e saiBol1.JH378276            2841307 0 +   3282555 I
e gorGor5.CYUI01015946v1        50260 0 -    378907 C

a score=145.000000
s hg38.chr15_KI270850v1_alt    127128 2 +    430880 CT
s macFas5.chr7              106532317 2 - 171882078 ca
i macFas5.chr7              I 6 C 0
s manLeu1.NW_012107797v1      1605133 2 +   1678425 ca
i manLeu1.NW_012107797v1    I 3 C 0
e aotNan1.NW_018511953v1      3092204 0 +   3745603 C
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             398082 0 -    584178 C
e canFam3.chr9                5821417 0 -  61074082 C
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23081793 19 -  99763055 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e chlSab2.chr29               3118446 39 +  24206276 I
e cerAty1.NW_011999477v1      9921007 163 +  10730278 I
e macNem1.NW_012011533v1      4001940 1273 +   4820037 I
e rheMac8.chr7              113462240 15 - 169600520 I
e nomLeu3.chr6               25641417 0 - 121039945 C
e saiBol1.JH378276            2841307 0 +   3282555 I
e gorGor5.CYUI01015946v1        50260 0 -    378907 C

a score=33413.000000
s hg38.chr15_KI270850v1_alt    127130 38 +    430880 cacacacacacacacacacacacacaTATATACATATA
s panPan2.chr15              23081812 38 -  99763055 tatacacacacacacaaacacacacatatatatatacc
i panPan2.chr15             I 19 C 0
s gorGor5.CYUI01015946v1        50260 30 -    378907 --------cacacacacacacacacatatatacatata
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25641417 25 - 121039945 -------------atatatatatagatatataCACACC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106532319 38 - 171882078 cacacacacacacacacacaaacacacacacacacaca
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012107797v1      1605135 38 +   1678425 cacacacacacacacacacacctatataaatatgtata
i manLeu1.NW_012107797v1    C 0 I 67
s aotNan1.NW_018511953v1      3092204 17 +   3745603 ---------------------ACATATATATACACGCC
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5821417 29 -  61074082 -------acacacacacacacacacatacaTATATG--
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             398082 25 -    584178 ---------actcacatatgtatacatacatata----
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e chlSab2.chr29               3118446 39 +  24206276 I
e cerAty1.NW_011999477v1      9921007 163 +  10730278 I
e macNem1.NW_012011533v1      4001940 1273 +   4820037 I
e rheMac8.chr7              113462240 15 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=22397.000000
s hg38.chr15_KI270850v1_alt    127168 15 +    430880 TATACGTGGCCAACT--
s panPan2.chr15              23081850 15 -  99763055 taaacatGGCCGACT--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        50290 15 -    378907 tatatGTGGCCAACT--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25641442 15 - 121039945 TACACATGGCCGACC--
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106532357 15 - 171882078 cacacGTGGCCAACT--
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3118485 15 +  24206276 TATACATGGCCGATG--
i chlSab2.chr29             I 39 C 0
s manLeu1.NW_012107797v1      1605240 15 +   1678425 TACATGTGACTGACC--
i manLeu1.NW_012107797v1    I 67 C 0
s aotNan1.NW_018511953v1      3092221 15 +   3745603 TACACGTGGCTGACC--
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5821446  7 -  61074082 --------GCTGCCA--
i canFam3.chr9              C 0 I 2
s dasNov3.JH564958             398107 15 -    584178 --tatatGGCAGACACA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9921007 163 +  10730278 I
e macNem1.NW_012011533v1      4001940 1273 +   4820037 I
e rheMac8.chr7              113462240 15 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=4190.000000
s hg38.chr15_KI270850v1_alt    127183 1 +    430880 G
s panPan2.chr15              23081865 1 -  99763055 G
i panPan2.chr15             C 0 I 46563
s gorGor5.CYUI01015946v1        50305 1 -    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25641457 1 - 121039945 G
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106532372 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4003213 1 +   4820037 G
i macNem1.NW_012011533v1    I 1273 C 0
s chlSab2.chr29               3118500 1 +  24206276 G
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1605255 1 +   1678425 A
i manLeu1.NW_012107797v1    C 0 C 0
s aotNan1.NW_018511953v1      3092236 1 +   3745603 G
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5821455 1 -  61074082 G
i canFam3.chr9              I 2 C 0
s dasNov3.JH564958             398122 1 -    584178 G
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922 0 -   4111199 I
e cerAty1.NW_011999477v1      9921007 163 +  10730278 I
e rheMac8.chr7              113462240 15 - 169600520 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=532650.000000
s hg38.chr15_KI270850v1_alt    127184 116 +    430880 CCTCGCCTCTAGCACTGGGAATCAGTCCCCGTGCTGTGCTTGTGGAGTCTTGTAGCCCA---GCAAGAGGAAGCTGTC-TCCTGACATC-----GCCC-CTCCAAAGTGCACCACCTCCAGTGAGC
s panPan2.chr15              23128429 116 -  99763055 CCTCGCCTCTAGCACTGGGAATCAGTCACCGTGCTGTCCTTGTGGAGTCTTGTGGCCCA---ACAAGAGGAAGGTCTC-CCCTGACACT-----GCCC-CTCCAAAGTGTGCCACCTCCAGTGAGC
i panPan2.chr15             I 46563 C 0
s gorGor5.CYUI01015946v1        50306 116 -    378907 CCTCACCTCTAGAACTGGGAATCAGTCCCCGTGCTGTGCTTGTGGAGTCTTGTAGACCA---GCAAGAGGAAGCTGTC-TCCTGACATC-----GCCC-CTCCAAAGTGCACCACCTCCAGTGAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25641458 116 - 121039945 CCTCGCCTCTAGCACTGGGAATCAGTCACCGTGCTGTCCTTGTGGAGTCTTGTGGCCCA---ACAAGAGGAAGGTCTC-CCCTGACACT-----GCCC-CTCCAAAGTGTGCCACCTCCAGTGAGC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106532373 121 - 171882078 CCTGGCCTCTAGCACTGGGAATCAGTCCTCGTGCTGTCCTTGTGGAGTCTTGTGGCCCA---ACAAGAGGAAGCTGTC-TCCTGACATTGCCCTGCCC-CTCGAAAGGGCACCACCTCCAGGGAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4003214 115 +   4820037 CCTCACCTCTAGCGCTGGGAATCAGTCACCGTGCTGTCCTTGTGGAATCTTGTGGCCCA---ACAAGAGAAAGCTCTC-CCCTGACATT------CCC-CTCCAAATTGCACCACCTCCAGTGAGC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9921170 115 +  10730278 CCTTGCCTCTAGCGCTGGGAATCAGTCACCGTGCTGTCCTTGTGGAATCTTGTGGCCCA---ACAAGACAAAGCTCTC-CGCTGACATT------CCC-CTCCAAATTGCACCACCTCCAGTGAGC
i cerAty1.NW_011999477v1    I 163 I 3
s chlSab2.chr29               3118501 114 +  24206276 CCTCGCCTCTAGCACTGGGAATAAGTCCCAGTGCTGTCCTTGTGGAGTCTTGTGGCCCA---ACAAGAGAAAGCTGTC-CCCTGACATC-----GCCC-CTCCAAAGTGTGCCACCTCCAGTGA--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1605256 116 +   1678425 TCTCGCCTCTAGTGCTGGGAATCAGTCACCGTGCTGTCCTTTTGGACTCTTGTGGCCCA---ACAAGAGAAAGCTGTC-CCCTGATATT-----GCCC-CTCCAAAGTGCACCACCTCCAGAGAAC
i manLeu1.NW_012107797v1    C 0 C 0
s aotNan1.NW_018511953v1      3092237 116 +   3745603 CCTCGCCTCTGGCATTGGGAGTCAGTCACCGTGCTGTCCCTGTGGGGTCTTGTGGCCCA---GCAAGAGAAAGCTGTC-CCCTGACACT-----GCCC-TTCCAAAGTGCGCCACCTCCAGTGAGC
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5821456 121 -  61074082 CCTCGCCTCTAGTGTTGGGAACCAATCACCACGCTGTCCTTGAGGAGTCTTGTGGTCCAACTACAGGGGAACACTGTCACCCTGACATC-----CCCCTCTCCAAAGTGTGCCACCTCCGATGAGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             398123 119 -    584178 CCTTGCCTCTAGTGTTGGGAATCAAGCACCGTGCAGTCCCTGTGGAGTCTTGTGGCCCAACTACAAGGAAATGCCGTCACCCTGACATC------CCC-CTCCAAAGTGTTCCACTTCCAGTGAGC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e rheMac8.chr7              113462240  15 - 169600520 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=104432.000000
s hg38.chr15_KI270850v1_alt    127300 60 +    430880 TTCCGGGACATGCGCGGCCTGTGGACAGCCAGCCCCC-----------------------------------GCCATCCCTCCCGCCCTT-CTGGC
s panPan2.chr15              23128545 93 -  99763055 CTGCCTGTCATGCCCAGCCTGTGGACAGCCAGCCCCCCGCCATCCGACCCACCCCCCGCCGTCCCACCCCCCGCCATCCCTCCCACCCCC-C--AC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        50422 60 -    378907 TTCCGGGACATGCACGGCCTGTGGACAGCCAGCCCCC-----------------------------------GCCATCCCTCCCGCCCTT-CTGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25641574 57 - 121039945 CTCC-TGTCATGCCCGGCCTGTGGACAGCCAGCCCCC-----------------------------------GCCATCCCTCCCACCCCC-C--AC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106532494 59 - 171882078 CTCCCTGTCATGCCCGGCCTGTGGACAGCCAGCCCCC-----------------------------------GCCATCCTTCCCGCCTCC-T-GGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4003329 58 +   4820037 CTCCCTGTCATGTGCAGCCTGTGGACAGCCACCCTCC-----------------------------------ACCATCCCTCCGAGCCCC-C--AC
i macNem1.NW_012011533v1    C 0 C 0
s chlSab2.chr29               3118615 47 +  24206276 -----------GCCTGTCATGTGGACAGCCAGCCCCC-----------------------------------GCCATCCCTCCCACCCTC-C--AC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1605372 48 +   1678425 CTCCCTGTCCTGCCCGACCTATGGACAGCCAGCCCCT-----------------------------------GCCATCCCTCC-------------
i manLeu1.NW_012107797v1    C 0 C 0
s aotNan1.NW_018511953v1      3092353 40 +   3745603 CTCTCTGTCAC-----------------CCAGGCCCC-----------------------------------GCCATCCCTCCCACCCCTGC----
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5821577 52 -  61074082 CTCCCTGTCATGCCCGGCCTGTGGACGGCCA--CTCT-----------------------------------TCCGTCCCTCCCCCGCT-------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             398242 66 -    584178 CTCTCTGTCATGCCCAGCCTGTGGATAGCCAGACCCC-----TCTGACGGACC-------------------CCCATCCCTCTCCCCCTC------
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e cerAty1.NW_011999477v1      9921285  3 +  10730278 I
e rheMac8.chr7              113462240 15 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=1670973.000000
s hg38.chr15_KI270850v1_alt    127360 432 +    430880 CAAGCAT--GGCGGTGCTGTGCAGGCAGCTGTGTGGCCTGACAGTCT-C-TACCAGTCCTGCTGTCCCTTGGCTGAGAA----ACCCATTTCTGGATGACAGAG-AATGTG----TCCTCTGCTGGC-TGTGTTCTCTATGGAGCTCAGGGGA--------------------------------GGGAAAA----------GGCCAAGCCATTTTTAGGGTGCTGTTGGGAGCAGTGA--AAAGGTCACACCCTTTTCAAGGGACACTTTTCCTGGAAAGTCCCTGGAGCTTAGCTGGCTCTTACCCTGTGAAGCCGGCTCTGGCCACTAGGGGACAGG---GCCCTGAACTCAGCCTGGAGGGAACCTGCGGGGCAGCCGG----CACT------------------CTGGAGGGACAG-----ACAGGCCACCCGGTGCAGACAGGAGAGG-GAGGCAGGGGGACAGAACGG-AAGACACCTGGGGTGGATGGAAGTCAGTGCCCTTGGGCACTGGTAT-
s panPan2.chr15              23128638 440 -  99763055 CAAGCAT--GGGGGTGCTGTGCAGGCAGCTGTGTGGCCTGACAGTCT-C-TACCAGTCCTCCTGTCCCTTGGCTGAGAATCAAACCCATTTCTGGATGACGGGG-AATATG----TCCTCTGCTGGC-TGTGTTCTCTGTGGAGCTGAGGGGA--------------------------------GGGAAAA----------AGCCAAGCCATTTCTAGGGTGCTGCTGGGAGCGGTGA--AAAGGCCACACCCTTTCCAAGGGACACTTTTCCTGGAAAGCCCCTGGAGCTTAGCTGGCTCTTATCCTGTGAAGCCAACTCTGGCCACTAGGGGGCAGG---ACCATGAACTCAGACTGGA-GGAGCCTGCGGGGCAGCTGA----CACT------------------CTAGAGGGCCAGACAGAACAGGCCACCCTGTGCAGACAGGAGAGG-GAGGCAAGGGGACGGAACCG-AAGACGACTGGGGTGCATGGAAGTCAGTGGCCTTGGGTGCTCGTAT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        50482 433 -    378907 CAAGCAT--GGCGGTGCTCTGCAGGCAGCTGTGTGGCCTGACAGTCT-CTTACCAGTCCTGCTGTCCCTCGGCTGAGAA----ACCCATTTCTGGATGACAGAG-AATGTG----TCCTCTGCTGGC-TGTGTTCTCTATGGAGCTCAGGGGA--------------------------------GGGAAAA----------GGCCAAGCCATTTTTAGGGTGTTGTTGGGAGCAGTGA--AAAGGTCACACCCTTTTCAAGGGACACTTTTCCTGGAAAGTCCCTGGAGCTTAGCTGGCTCTTACCCTGTGAAGCCAGCTCTGGCCACTAGGGGACAGG---GCCCTGAACTCAGCCTGGAGGGAACCTGCGGGGCAGCCGG----CACT------------------CTGGAGGGACAG-----ACAGGCCACCTGGTGCAGACAGGACAGG-GAGGCAGGGGGACAGAACGG-AAGACACCTGGGGTGGATGGAAGTCAGTGCCCTTGGGCGCTGGTAT-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25641631 457 - 121039945 CAAGCAT--GGGGGTGCTGTGCAGGCAGCCGTGTGGCCTGACAGTCT-C-TACCAGTCCTACTGTCCCTCGGCTGAGAAACAAACCTATTTCTGGATAACGGGG-AATGTG----TCCTCTGCTGGC-TGTGTTCTCTGTGGAGCTCAGGGAA--------------------------------GGGGAAA-----------TCCAAGCCATTTCTAGGGTGCTGTTGGGAGGAGTGA--AAAGGCCACATCCTTTCCAAGGGACACTTTTCCTAGAAAGCCCCTGGAGCTTAGCTGGCTTTTATCCTGTGAAGCCGGCTGTGGCCACTAGGGGGCAGG---GCCATGAACTCAGCCTGGA-GGAGCCTGCGGGGCAGCCAG----CGCTAACAGGCCACCAGGTGCACTGGAGGGACAGACAGAACAGGCCACCGGGTGCAGACAGGCGACG-GAGGCAGGGGGATGGAACGG-AAGATGCCTGGGGTGGATGGAAGTCGGTGCCCTTGGGTGCTGGTAT-
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106532553 434 - 171882078 CAAGCAT--GGGGGTGCTGTGCAGGCAGCTGTGTGGACTGACAGTCT-T---CCAGTCCTGCTGTCCCTCGGCTGAGACTCCAACCCATTTCTGGATGACAGAG-AATGTG----TCCTCTGCTGGC-TGTGTTCTCTGTGGAGCTCAGGGGA--------------------------------GGGAAAA----------GTCCAAGCCATTTTTAGGGTGCTTTTGGGAGCGGTGA--AAAGGTCACACCCTTTCCAAGGGACACTTTTCCTAGAAAGTCCCTGGAGCTTAGCGGGTTCTTATCCTGTGAAGCCGGATCTGGCCACTAGGGGGCAGG---GCCGTGAACTCAACCTGGAGGGAGCCTGCGGGGCAGCCTG----CACT------------------CTGGAGGGACAG-----ACAGGCCACCCGGTGCAGACAGGAGAGG-GAGGCAGGGGGACGGAATGG-AAGACACCTGGGGTGGGTGAAAGTCAGTGCCCTCGGGTGCTGGTGT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4003387 436 +   4820037 CAAGCAT--GGGGGTGCTGTGCAGGCAGCCATGTGGCCTGACAGTCT-C-TACCAGTTCTGCTGTCCCTCAGCTGAGAATCAAACCCATTTCTGGATGACGGGG-AATGTG----TCCTCTGCTGGC---TGTTCTCTGTGGAGTTCAGGTGA--------------------------------GGGAAAA----------GGCCAACCCATTTCTAGGGTGCTGTTGGGAGTGGTGA--AAAGGCCACACCCTTTCTGAGGGACAC--TTCCTGGAAAGCCCCTGGAGCTTAGCTGGCTCTTATCCTTTGAAGCCGGCTGTGGCCACTAGGGGGCAGG---GTCATGAACTCAGCCTGCA-GGAGCCTGCGGGGCACCTGT----CACT------------------CTGGAGGGACAGACAGAACAGGTCACCAGGTGCAGACAGGAGAGG-GAGGCAAGGGGACAGAATGG-AAGATGCCTGGGGTGGATGGAAGTCAGTGCCCTTGAGTGCTGGTAT-
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9921288 441 +  10730278 CAAGCAT--GGGGGTGCTGTGCAGGCACCCCTGTGGCCTGACAGTGT-C-CACCAGTCTGACTGTCCCTCAGCTGAGAATCAGATCCATTTCTGGATGGCGGGG-AATGTG----TCCTCTGCTGGC-TGTGTTCTCTGTGGAGCTCAGGGGA--------------------------------GGGAAGA----------GGCCCAGCCATGTCTAGGGTGCTGTTGGGAGTGGTGA--AAAGGCCACACCCTTTCTGAGGGACACTTTTCCTGGAAAGCCCCTGGAGCTTAGCTGGCTCTTATCCTGTGAAGCCTGCTCTGGTCACTAGAGAGCAGG---GCCATGAACTCAGCCTGGAGGGAGCCCGCGGGGCAGTGGG----CACT------------------CTGGAGAAACAGATAGAACTGGTCACGAGGTGCAGACAGGAGAGG-GAGGCAGGGGGACAAAATGG-AAGATGCCTGGGGTGGATGGAAGTCAGTGCCCTTGAATGCTGGCAT-
i cerAty1.NW_011999477v1    I 3 C 0
s chlSab2.chr29               3118662 435 +  24206276 CAAGCAT--GGGGGTGCTGTGCAGGCAGCTGCGTGGACTGACAGTCT-T---CCAGTCCTGCTGTCCCTCGGCTGAG----AAACCCATTTCTGGATGACGGGG-AATGTG----TCCTCTGCTGGC-TGTGTTCTCTGTGGAGCTCAGGGGA--------------------------------GGGGAAA----------GGCCAAGCCATTTCTAGGGTGCTGTTGGGAGTGGTGA--AAAGGCTACAGCCTTTCCAAGGGACACATTTCCTGGAAAGTCCCTGGAGTTTAGCTGGCTCTTATGCTGTGAAGCCGGCTCTGGCCACTAGGGGGCAGG---GTCATGAACTCAGCCTGGAGGGAGACTGAGGGGCAGCCTG----CACT------------------CTGTAAGGACAGACAGAACAGGCCACCCAGTGCAGACAGGAGAGG-GAGGTAGGCGGACGGAAGGG-AAGACACCTGGGGTAGATGGAAGTCAGTGCCCTTGGGTGCTGGTAT-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1605420 427 +   1678425 ----------------CTGTGCAGGCAGCTGTGTGGCTTGACAGTCT-T-CACCAGTCCTGCTGTCCCTCGGCTGAGAATCAAACCCATTTCTGGACGACGGGGAAATGTG----TCCTCTGCTGAC-TGCGTTCTCTGTGGAGCTCAGAGGA--------------------------------AGGGAAA----------GGCCAAGCCATTTCTAGGGTGCTTTTGGGAGCGGTGA--AAAGGCCATACCCTT---AAGGGACAC--TTCCTGGAAAGCCCCTGGAGCTTAGTTGGCTCTTATCCTGTGAAGCTGGCTCTGGCCAACAGGGGGCAGG---GCCATGAACTCAGCCTGGAGGGAGCCTGTGAGGCAGCCAGCGGACACT------------------CTGGAGGGACAGATGGAACAGGCCACCAGGTGCAGACAGGCGAGG-GAGGCGAGGGGATGGGACGG-AAGATGCCTGGGGTGGGTGGAGGTCAGTGCCCTTAGGTGCTGGTAC-
i manLeu1.NW_012107797v1    C 0 C 0
s aotNan1.NW_018511953v1      3092393 440 +   3745603 CAAGCAT--GGGGGTGCTGTGCAGGCAGCCCTGTGGCCTGACAGTCT-C-TACCAGTCCTGCTGTTCCTCGGAGGAGAGTCAAACCCATTTCTGGATGACGGGG-GATGTG----TCCTCTGTGGAC-TGTGTTCTCTGTGGAGCTCAGAGGA--------------------------------GAGGAAA----------GGCCAAGCCATTTCTGGGGTGCTGTTGGGAGCGGTGA--AAAGGCCTCACCCTTTCCAAGGGACACTGTTCCTGGAAAGTCCCTGGAGCTTAGCTGG-TCTTATCCTGTGAAGCTGGCTCTGGCCACTAGGGGGCAGGAGTGCCACGAACTCAGCCTGGAGGGAGCCTGCGGGGCGGCCGG----C-CT------------------CTGGAGAGACAGACAGAACAGGCCACCGGGGGCAGACAGGAGAGG-GAGGCAGGGGG--TGGAAGA-AAGACGCCTGGGGTGGATGGAAGTCAGTGCCCTTGGGTACTGGTAC-
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5821629 451 -  61074082 CGAGCACAGGGGGGCGCTGTACTGGCAGCTGTGTGGTCC-----TCTGC-CACCAGTCTTGCTGTCTCTTGGCTGAGAATAAAACCCATTTCTGGACGATGGGA-GAC-TG----TCCTCTGCTGGCTTGTGTT-TTTGTGGAGTTCAGGGGAAGGGGAAGGCTTCAACCTTGGGATGAAGCGGTGGGGAAG----------GGCCCCACCATTGCTAGGGTGTTGGGATGAGTGGCGAAGAGAGGTCCTGTCCTTTCCAGGGCCTACTG-----GGAAAGCACCTGCGGATTCATGGGTTATCTTTCTGGGAAGCCTGCTCTGCCCACTAGGGGGCAGG---GGCACCAACTCAGCCCAGAAGGAGGATTGGGGGCCCCTGGCACGCACT------------------GTGCAGGGGAAG-GACAACAGGCCACC---------------AGA-GGGCCAGGGTGATGAGAGGGCAAAGTGCCTG----AACTGGAAGGCAGCACTCTTG-GTGCGAGGAC-
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958             398308 406 -    584178 AGAACAA--GGGGGTGCTGCCCTGGCGGCCGTGTGG-------GTCT-C----------TGTTTTATTCTGGCTGAGAATAAAACCCATTTCTGGATG---GAG-AACGTGTGTCTTCTCTGCTGGC-TGTATTCTCTGTGGAGCTAAGGGGT--------------------------------GGGGAAGGGTGAGGGAGGGCCCAGCCATTGCTAAGACACTGGGAGGAGTGGC-A--GAAGACCCCTTCATTTCTAAG------CCTACTTGGAAAGCACCTGGAGGTCAGCTTGTCGT----CTGTAAGCTTTGCTCTGGCCACTGCGGGGCAGG---ATCATGAATTTAGCCTGG-----------GACTCAGCCTG----CACT------------------CTGGAAGGATATGAGGAATAGACTAC-AGGTACATAGAGGTAAGATGGGGCAGTATGCTGGGATGA-AAAA-GCCTAGAATGAA--------GGCTTTCTTGGGTTCTGGCACC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e rheMac8.chr7              113462240  15 - 169600520 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=232879.000000
s hg38.chr15_KI270850v1_alt    127792 54 +    430880 CTGTCTTCCCTG--CC--ACAGCTAGA-----------TCAGGCTTCTCAACCAGTTGGCTGTCAGGGC
s panPan2.chr15              23129078 54 -  99763055 CTGCCTTCCCGG--CC--ACCGCTAGA-----------TCAGGCTTCTGAGCCTGTTGGCTGTCAGGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        50915 54 -    378907 CTGTCTTCCCTG--CC--ACAGCTAGA-----------TCAGGCTTCTCAACCAGTTGGCTGTCAGGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25642088 39 - 121039945 CTGCCTTCCTGG--CC--ACCGCTACA-----------T---------------GTTGGCTGTCAGGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113462255 54 - 169600520 CTGCCTTCCCGG--CC--ACCGGTAGA-----------TCAGGCTTCTGAGCCTGTTGGCTGTCAGGGC
i rheMac8.chr7              I 15 I 14
s macFas5.chr7              106532987 53 - 171882078 -TGTCTTCCCGG--CC--ACAGCTAGA-----------TCAGTCTTCTGAACCTGTTGGCCGTCAGGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4003823 54 +   4820037 CTGCCTTCCTGG--CC--ACCACTATA-----------TCAGGCTTCTGAGCCTATTGGCTGTCAGGGC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9921729 54 +  10730278 CTGCCTTCCGGG--CC--ACCGGTAGA-----------TCAGGCTTCTGAGCCTGTTGGCTGTCAGGGC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3119097 54 +  24206276 CTGTCTTCCCGG--CC--ACAGCTAGA-----------TCAGGCTTCTGAGCCTGTTGGCTGTCAGGGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1605847 54 +   1678425 CTGTCTTCCCAG--CC--ATGGCTAGA-----------TCAGGCTTCTGAGCCTGTTGTCTGTCAGGGC
i manLeu1.NW_012107797v1    C 0 C 0
s aotNan1.NW_018511953v1      3092833 54 +   3745603 CTGCCTTCCTGG--CC--ACCGCTAGA-----------TCAGGCTTCTGAGCCTGCTGGCTGTCAGGGC
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5822081 55 -  61074082 CTGCTTTCCCCAACCC--AGGATTAGA-----------TCAGGC-TCTGAGCCTTTGGACCATTAAGAC
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958             398714 65 -    584178 CTGCTTTCCCTC--CCCAAGATTTAGAGAATTCCACTGTCAAG--TGTGAGGCTGTTGGTCATTATGAC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=66414.000000
s hg38.chr15_KI270850v1_alt    127846 25 +    430880 CAGAGTGTACTCCGTAG-GCGCCATG
s panPan2.chr15              23129132 25 -  99763055 CGGACTGTGCCCCATAG-GCGCCATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        50969 25 -    378907 CAGACTGTACTCCGTAG-GCGCCATG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25642127 25 - 121039945 CGGACTGTGCCCTACAG-GCACCACG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106533040 25 - 171882078 TGCACTGTGCCCATTAG-GCACCATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4003877 25 +   4820037 CTGACTGTGCCCCATAG-GTGCCATG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9921783 25 +  10730278 CTCACTGTGCCCCGTAG-GCACCATG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3119151 25 +  24206276 CGGACTGTGCCCCATAG-GTGCCATG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1605901 25 +   1678425 CGGACTGCGCCCCCTAG-GTGCCATG
i manLeu1.NW_012107797v1    C 0 C 0
s aotNan1.NW_018511953v1      3092887 13 +   3745603 CGGAC-------------GTGCCATG
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5822136 24 -  61074082 --AGGAGTGCTCCTTAGAGTCCCATG
i canFam3.chr9              C 0 I 4
s dasNov3.JH564958             398779 25 -    584178 AGCTCTGTCCCCTAGAA-GCCCCATG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e rheMac8.chr7              113462309 14 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=800814.000000
s hg38.chr15_KI270850v1_alt    127871 165 +    430880 GCAGTCCCCATGAAATCCACCAGGTGTCACCAGGCAGCATACAGGTAACAGGCCTGGAAGGTCCCCAACAGCCC----AGCTGGACATGCTGAGACACTCTGGG------------------------------------------GCTC--------CTCATTCAGTG------GGACAAACTGCAGGAC-------CCAGTGA-----GGGAAATGGGAACATACCAGGCCGAGC
s panPan2.chr15              23129157 161 -  99763055 GCAATCCCCATGCAATCTACCAGGTGTCACCAGGCAGCATACAGGTAATAGGCCTGGAAGGTCCCCAACAGCCC----AGCTGGACATGCT----CACTCTGGG------------------------------------------GCTC--------TTCATTCAGTG------GCGCAAACTCCAGGAC-------CCAGTGA-----GGGAAATGGGAACCCACCACGCTGAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        50994 165 -    378907 GCAGTCCCCATGAAATCCACCAGGTGTCACCAGGCAGCATATAGGTAACAGGCCTGGAAGGTCCCCAACAGCCC----AGCTGGACATGCTGAGACACTCTGGG------------------------------------------GCTC--------CTCATTCAGTG------GGACAAACTGCAGGAC-------CCAGTGA-----GGGAAACGGGAACATGCCAGGCCGAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25642152 165 - 121039945 GCAGTCCCCGTGAAATCCACCAGGTGTCACCAGGCAGCATACAGGTAACAGGCCTGGAAGATCCCCAACAGCCC----AGCTGGACATGCTCAGACACTCTGGG------------------------------------------GCTC--------CTCGTTCAGTG------GCACAAACTCCAGAAC-------CCAGTGA-----GGGAAACGGGAACCCACCAGGCTGAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113462323 164 - 169600520 GCAGTCCACATGAAATCCACCAGCTGTCACCAGGCAGCATACAGGTAACAGGCCTGGAAGGTCCCCAACAGCCC----AGCTGGACATGCTCAGACACTCT-GG------------------------------------------GCTC--------CTCGTTCAGTG------GCACAAACTCCAGGAC-------CCAGTGA-----GGGAAACAGGAACCCACCAGGCTGAGT
i rheMac8.chr7              I 14 C 0
s macFas5.chr7              106533065 165 - 171882078 GCAGTCCCCGTGAAATCCACCAGGTGTCACCAGGCAGCATCCAGACAACAGGCCTGGAAGATTCCCAACAGCCC----AACTGGGCATGCTCAGACCCTCTGGG------------------------------------------GCTC--------CTCTTTCAATG------GGACAAACTGCAGGAC-------CCACTGA-----GGGAAACGGGAACATACCAGGCTGAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4003902 165 +   4820037 GCAGTCCCTGTGAAATCCATCAGGTGCCACCAATCAGCATACAGGTAACAGGCCTGGAAGGTCCCCAACAGCCA----AGCTGGACATGCTCAGACACTCTGGG------------------------------------------GCTT--------CTCGTTCAGTG------GCACAAACTCCAGCAC-------CCAGTGA-----GGGAAATGGGAACCCACCAGGCTGAGC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9921808 165 +  10730278 GCAGCCCCTGTGAAATCCACCAGGTGTCACCAGGCAGCATACAGGTAACAGGCCTGGAAGGTCCCCAACAGCTG----AGCTGGACATGCTCAGACACTCTGGG------------------------------------------GCTC--------CTCATTCAGTG------ACACAAACTCCAGCAC-------CCAGTGA-----GGGAAACGGGAAAACACCAGGCTGAGC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3119176 165 +  24206276 GCAGTCCCCATCAAATCCACCAGGCGTCACCAGGCAGCATACAGGTAACAGGCCTGGAAGATCCCCAACAGCCC----AGCTGGACATGCTCAGACACTCTGGG------------------------------------------GCTC--------CTCGTTCTGTG------GGACAAACTGCAGGAC-------CCAGTGA-----GGGAAACAGGAACACACCAGGCTGAGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1605926 163 +   1678425 GTAGTCCCGGTGAAATCCCCTAGGTGACACGAGGCAGCATACAGGTAACACGCCTGGAAGGTCCACAACAGCCC----AGCTGGACATATTCAGACA--CTGGG------------------------------------------ACTC--------CTCCTTCAGTG------GCACAAACTCCAGGAC-------CCAGTGA-----GGGAAATGGGAACACACCAGGCCGAGC
i manLeu1.NW_012107797v1    C 0 C 0
s aotNan1.NW_018511953v1      3092900 164 +   3745603 GCAGTCCCTGTAAAATCCCCCAGGTGTCACCAGGCAGCACACAGGTAACAGGCCTGGAAGGTCCCCAACAGCCC----AGCTGGACATGCT-AGACACTCTGGG------------------------------------------GCTC--------TTCGTTCTGTG------CCATAAACTCCAGGAC-------CCAGTGA-----GGGAAACGGGAATATACCAGGCCGAGC
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5822164 225 -  61074082 GCAGGGGCCCTGGGATCCCCCAGGCTTCCCCAAGCAGCATGGGGGTGACAGGCCTGGATCATCTCCAACAGCTCTGTTTGCTAGGCAGGCTCAGAGACACTGGGGCTTTGCACAATCCAGAAGTCTGCCCTCTGCTGGCAGGATCTGCTC--------CCTGTTCAATGCCCACAGTGCAGACTCCAGGACCTAGGGGCCAGTGAC----TGGAAACAGGCACACACAAGGCTAAAC
i canFam3.chr9              I 4 C 0
s dasNov3.JH564958             398804 165 -    584178 GCAGTCCCTGTGGAATCCCCCTAG-----------------CAGATGACAGGCCTGGAAGATCCCTAGCAGCCC----A-CTGAATGTGTACAGACACACTGGG------------------------------------------GTTCTAGGGTATCTGGCTAGGTACCCAC-ACCTGGAACACAGGAT-------CCAGTGACCGGTGGATGGCAGGAACAAACAAGGCCAAGC
i dasNov3.JH564958          C 0 I 1800
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=2076336.000000
s hg38.chr15_KI270850v1_alt    128036 487 +    430880 AGTATGGCTAAATCCATTTATTCCaaaatcaaaagcaaaaaaaaaaa-aaaaaaCAGGAGTCCC--ATCACC-AGGG-AGCCATGACCCCATCCCCGCCTCCTTCCTCGCTCCTATGCTAGCAATAAATAAGTTTCC-CAGTCGCGAATAATTATAAGAACCTCTTCCTCATATGCCAGCTGCAACCTCCGCTAGGTACG-----------------------------ATACAGAATGTTACACAGCTACAGTATGTACACGGGGGAAG-GG-GGGCCA-CCCCC-AGCAGCCTGTGCCCTGGCCTGGTCTACAGTTAACTCC-ACTGTCCC---GCCTCA------GCTGCC-------------------------------------------TCTCTGAGTAAGAAGATG--GGAGCCCCCCTGAGGGAAAAGTTGCTTTGGTGAGAGTAAGAAGGCCGTCAGA-----CCT-------------------CCTCCAAACAAACCAACTCCACC---AACCTCTGGCTCTTAAAT-------AACAAACATCATCATCCAGAAATGTAAGGACTCAGCCTTGGTCAAGGTGGTAAAGGGTCTG------TTTGTCT
s panPan2.chr15              23129318 503 -  99763055 AGTCTGGCTAAATCCCTTTATTCCAAAATGGAAAGC---------AA-AATAAACAGGAGTCGC--ATCACC-AAGGCAGCCAGGACCCCATCCCATCCTCCTTCCTCTGTCCTATGCTATCAATAAATAAGTTTCC-CAGCCGTAAATAATGATTAGAATCTCCTCCTCATATTCCAGCTCCAGTCTCTGGTAGGTACGATACAAGGGGTGGCCTTACCCCCCGGAATATACAAAATGTTACACAGATACTATATGTACACTGGGGAAG-GG-GGGCCA--CCCC-AGCAGCCCATGCCCTTGCCTGCTCTACGGTTAGCCCC-ACTGTCCT---GCCCCA------GCTGCC-------------------------------------------TCTCTGAAT---AAGATG--GGAG-CCCCCTGAGGGAAAAGTTGCTTTGGTGAGAGTAGGGAGGCCATCAGG-----CCT-------------------CCTCCAAACAAACCAGCTCTACC---AGCCTCTGGCTCTTAAAT-------AACAATCATCATCATCCAGAAATTTAAGGACTCAGCCCTGGTCAAGGTGCCAAAGGGTCTG------TTTTTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        51159 483 -    378907 AGTATGGCTAAATCCATTTATTCCaaaatcaaaagcaaaaaaaaaaacaaaaaaCAGGAGTCCC--ATCACC-AGGG-AGCCATGACCCCATCCCCGCCTCCTTCCTCGCTCCTATGCTAGCAATAAATAAGTTTCC-CAGCAGCGAATAATTATAAGAACCTCTTCCTCATATGCCAGCTGCAACCTCCGCTAGGTACG-----------------------------ATACAGAACGTTACACAGATACAGTATGTACAAGGGGGAAG-GG-GGGCCA--CCCC-AGCAGCCTGTGCCCTGGCCTGGTCTACAGTTAACTCC-ACTGTCCC---GCCTCA------GCTGCC-------------------------------------------TCTCTGAGTAAGAAGATG--GGAGCCCCGCTGAGGGAAAAGTTGCTTTGGTGAGAGTAAGGAGGCCGTCAGA-----CCT-------------------CCTCCAAACAAACCAACTCCACC---AACCTCTGGCTCTTAAAT-------AA----CATCATCATCCAGAAATGTAAGGACTCAGCCTTGGTCAAGGTGGTAAAGGGTCTC------TTTGTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25642317 503 - 121039945 GCTATGGCTAAATCCATTTACTCCAAAATGAAAAGC----------A-AAATAAGGGGAGTCAC--ATCACC-AGGG-AGCCACAACCCCATCCCGGCCTCCTTCCTCTGTCCTATGCTATCAATAAATAAGCTTCC-CAGCCACAAATAATGATTAGAACCTCCTCCTCATATGCCAGCTCCAACCTCCACTAGGTACGATACAGGGGGTGGCCCTACCCCCTGGAATATACAAAATGTTACACAGATACTATATGTACACTGGGGAAG-GG-GGTCCA--CCCC-AGCAGCCCGTGCCCTCGTCTGCTCTACAGTTAGCCCC-ACTGTCCC---GCCTCA------GCTGCC-------------------------------------------TCTCTGAATAAGAAGATG--GGAG--CCCCCGAGGGAAAAGTTGCTTTGGTGAGAGTAGAGAGGCCATCAGG-----CCT-------------------CCTCCAAACAAACCAGCTCCACC---AGCCTCTGGCTCTTCAAT-------AACAATCAGCATCATCCAGAAATTGAAGGACTCAGCCCTGGTCAAGGTGGCAAAGGGTCTG------TTTTCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113462487 506 - 169600520 AGTATGACTAAATCCATTTATTCCAAAATGAAAAGC---------AA-AATACACAGGAGTCGC--ATCACC-AAGGCAACCAGAATCCCATCCTCACCTCCTTCCTCTGTCCTATACTATAGATAAATAAGTTTCC-CAGCTGTAAATAACATTTAGAACCTCCTCCTCATATGCCAGCTCCAGCCTCCACTAGTTACAATACAGGGGGTGGCCCTACCACCTGGAATATACAAAATGTTACACAGATACTATATGTACACTGGGGAAG-GG-GGGTCA--CCCC-AGCAGCCCGTGCCCTCACCTGCTCTACACTTAGCCCC-ACTGTCCT---GCCTCA------GCTGCC-------------------------------------------TCTCTGAATAAGAGGACG--GGAGCCCCCT-GAGGGAAAAGTTGCTTTGGTGAGAGTAGGGAGGCCATCAGG-----CCT-------------------CCTCCAAACAAACCAACTCCACC---AGCCTCTGGCTCTTCAAT-------AACAAACATCACCGTCCAGAAATTTAAGGACTCAGCCCTGGTCAAGGTGGCAAAGGGTCTG------TTTGTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106533230 482 - 171882078 AGTATAGCTAAATCCATTTATTCCCAAATAAAAAGC---------AA-AGAAAACAGGAGTCCC--ATCACC-AGGG-AGCCATGACTCCATCCCCGCCTCCTTCCTCGCTCCTATGCTAGCAATAAATAAGTTTCC-CAGCTGCAAATAACTATCAGAACCTCTTCTTCATATGCCAGCTGCAACCTCCGCTAGGTACGATAC-------------------------ATACAGAATGTTACACAGATACAGTATGTACATGGGGGAAG-GGCGGGTCA--CCCCTAGCAGCCCGTGCCCTCGCCTGGTCTACAGTTAGCTCC-ACTGTCCC---GCCTCA------GATGCC-------------------------------------------TCTCTGAGTAAGATGATG--GGAGCACCCC-GTGAGAAAAGTTGCCTCGGTGAGAGTAAGGAGGCCATCGCA-----CCT-------------------CCTCCAAAGAAACCAACTCCATC---AACCTCTGGCTCTTAAAT-------AACAAACATCATCATCCAGAAATGTAAGGACTCAGCCTTGGTCAAGGTGGTAAAGGGTCTG------TTTTTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4004067 505 +   4820037 AGTATGGCTAAATCCATTTATTCCATAATGAAAAGC---------AA-AATAAACAGGAGTCAT--ATCACC-AGGG-AGCCACAAC-CCATCCCCACCTCCTTCCTCTGTCCTGTGCTATCAATAAATAAGTCTCC-CAGCCATAAATAATGATTAGAACCTCCTCCCCATATACCAGCTCCAACCTCCATGAGGTACAATACAGGGGGTGACCCTAACCCCTGGAATATACAAAATGTTACACAGATACTATATGTACACTGGGGAAG-GG-GGGCCA--CCCC-AGCAGCCCGTGCCCTCACCTGCTCTACACTTAGCCCC-ACTGTCCT---GCCTCA------GCTGCC-------------------------------------------TCTCCCAATAAGTAGATG--GGAGCCCCCCTGAGGGAAAAGTTGCTTTGGTGAGAGTAGGGAGGCCATCAGG-----CCT-------------------CCTCCAAACAAACCAACTCCACC---AGCCTCTGGCTCTTAAAT-------AATAAACATCACCATCCAGGAATGTAAGGACTCAGCCCTGGTTAAGGTGGCGAAGGGTCTG------GTTGTCT
i macNem1.NW_012011533v1    C 0 I 475
s cerAty1.NW_011999477v1      9921973 504 +  10730278 AGTATGGCTAAATCCATTTATTCCAAAATGAAAAGC---------AA-AATAAACAGGAGTCAT--ATCACC-AGGG-AGCCACAACCCCATCCCCACCTCCTTCTTCTGTCCTGTGCTATCAATAAATAAGTCTCC-CAGCCATAAGTAATGACTAGAACCTCCTCCCCATATGCCAGCTCCAACCTCCATGAGGTACAATACAGGGGGTGGTCCTAACCCCTGGAATATACAAAATGTTACACAGATACTATATGTACACTGGGGAAG-GG-GGGCCA--CCCC-AGCAGCCCGTGCCCTCACCTGTTCTACACTTAGCCCC-ACTGTCCC---GCCTCA------GCTGCC-------------------------------------------TCT--GAATAAGAAGACG--GGAGCTCCCTTGAGGGAAAAGTTGCTTTGGTGAGAGTAGGGAGGCCATCAGG-----CCT-------------------CCTCCAAACAAACCAGCTCCACA---AGTCTCTGGCTCTTCAAT-------AACAAACATCACCGTCCAGGAATGTAAGGGCTCAGCCCTGGTCAAGGTGGCAAAGGGTCTG------ATTGTCT
i cerAty1.NW_011999477v1    C 0 I 1
s chlSab2.chr29               3119341 493 +  24206276 TGTATGGCTAAATCCATTTATTCCACAATGAAAAGC---------GA-AATAAACAGGAGTCAC--ATCACCAAGGG-AGCCACGACCCCATCCCCGCCTCCTTCCTCTGTCCTATGCTAGGAATAAATAAGTTTCC-CAGCTGCAAATAATTATTAGAACCTCCTCTCCTTATGCCAGCTCCAACCTCCACTAGGTACAATACAGGGGGTGGCCCTACCCCC---------CAGAATGTTACACAAATTCAATGTGTATACTGGGGAAGCGG-GAGTCA--TCCC-AGCAGCCCATGCCCTCACTTGGTCTACTGTTAGCCCC-ACTGTCCT---GGTTCA------GTTGCC-------------------------------------------TCTCTGAATAAGAAGATG--GGAG--CCCCCGAGGGAAAAGTTGCTTTGGTGAGAGTAGAGAGGTCATCAGG-----CCT-------------------CCTCCAAACAAACCAACTCCATC---AGCCTCTGGTTCTTAAAT-------AACAAGCATCATCGTCCAGAAATTCAAGGACTCAGCCGTGGTCAAGGTGGCAAAAAGTC----------TGTCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1606089 503 +   1678425 GGTATGACTAAATCCATGTATTCCA-AATAAAAAGC---------AA-AGTAAACAGGAGTCGA--ATCACC-AGGG-AGCCACAACCCCCTTCCCGCCTCCTTCCTCTGTCCTATGCCAGCAATAAATAAGTTTTC-TAGCCACAAATAATTATTAGACCCTCCTCCCCATGTGCCAGCTCCAACCTCTGCTAGGTACGATACA-GGGGTGGCCCTACCCTCTGGAATATACAAAACATTACGCAGACACAATATGTACATCGGGGAA--GG-GGGCCA--CCCC-AGCAGCCTGTGCCCTCACTTGATCCACAGTTTGCCCC-ACTGTTCT---GCCTCA------GCTACC-------------------------------------------TCTCTGAATAGGAAGATG--AGAGACCCCCTGAGGGAAAACTTGCTATGGTGAGAGTAAGGAGGCCATCAGG-----CTT-------------------CCTCCGAACAAACCAACTTCACC---AGCCTCTGGCTCTTAAAT-------AACAATCATCATCATTCAGAAATTTAAGGACTCAACCCTGGTCAAGGTGGCAAAGGGTCTG------TTTGTCT
i manLeu1.NW_012107797v1    C 0 C 0
s aotNan1.NW_018511953v1      3093064 504 +   3745603 AGTGTGACTGAACCCATTTATTCCAAAATAAAAAGC---------AA-AATAAACAGGAGTTGC--ATCACC-AGGG-AGCCACGACCCCATCCCCGCCTCCTTCCTCTGTCCTCTGCTATCAATAAATAAGTTTCC-CAGCTGCAAATAATTATTGAATCCTCCTCCCCATGTGCCAGCTCCAACCTCTGCTAGGTACGATACACGGGGCACCCCAGACCCCTAAAATATACAACATGTTACACAGATACAATATGTACACTGGGGAAG-GG-GGGTC---CCCC-AGCAGCCCGTGCCCTCGCCTGGTCCACAGTTAGCGCC-ACCGTCCT---GCCTTA------GCTGCC-------------------------------------------TCTCTGAATAAGAAGATG--GGAG-CCCCCTGAGGGAAAAGTTGCTTTGGTGAGAGGAAGGAGGCCATCAGG-----GCT-------------------CCTCCAAACCAACCAACTCCAGC---AGCCTCTGGCTTCTAAAT-------AACAACCATCATCATCCAGAAATTTGAGGACTCAGCCCTGGTCAAGGTGGCAAAGGGTCTG------TTTGTCT
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5822389 580 -  61074082 AGTATGGCTAAATCCATTTATTCCGAAATAAAAAGC---------AA------ACAGAAGTTGTGAGTCACC-TGGG----CGGAACCCCGTCCCCGCCTCCTTCCTCTGTCCTATGCTATCAATAAATAAGTTTCCTCATCCCCAAATATTTAATAGAACTTCCTCCCCATTTGCCAGTTCCAACCTCTGC----TATGATACAGGGGGCTGCCCTATCCCC-AGAATATACAAAATGTTACACAGGTACAGTATATACACTGGGGAGG-GA-GGCCCCCCCCCC-ACCAGCTTATGCCTTTGCCTGGCCTG-GGTTAGCCCCAACTGTCCTAAGGCCTGGGAGAGTGCTGCCCAGTCATTGAGCTGGACAGGGGGAGCACTTGTTCCCCAAAGTGCCTCTGAAT-AGAGGATGCCTGAGCCCCTCTGAAGGA----CTGCT-TGGTGGGGGTGAGGAGGCCACCAGGGAGCCCCTGCCCCCCAAGAAAGGGAGCCCTCTAAATAAACTATGTTTTTATTGAGCCTCTGGCTCTTTGTTTTTCTGGAACGATGAGTA--GTCCAGA----TAAAGACACAGCCCTTGCCAAGGTGGCAAGAGGTCTGCACCTATTTGTCT
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             398969 1800 -    584178 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922   0 -   4111199 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=40699.000000
s hg38.chr15_KI270850v1_alt    128523 12 +    430880 CCCTCCATTAGA-------------------
s panPan2.chr15              23129821 12 -  99763055 CCCCCCATTAGA-------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        51642 12 -    378907 CCCTCCATTAGA-------------------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25642820 12 - 121039945 CCCCCCATTAGA-------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113462993 12 - 169600520 CCCTCCATTAGA-------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106533712 12 - 171882078 CTCTTCATTAGA-------------------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9922478 12 +  10730278 CCCCTCATTAGA-------------------
i cerAty1.NW_011999477v1    I 1 C 0
s chlSab2.chr29               3119834 12 +  24206276 CCCCCCATTAGA-------------------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1606592 12 +   1678425 TTCCCCATTAGA-------------------
i manLeu1.NW_012107797v1    C 0 C 0
s aotNan1.NW_018511953v1      3093568 12 +   3745603 CCCCCCATTAGA-------------------
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5822969 31 -  61074082 CCCCCAATTAGGAGGCTTTTCACACCCCTCT
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             398969 1800 -    584178 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=341348.000000
s hg38.chr15_KI270850v1_alt    128535 85 +    430880 CAGGGGTCTTGTCTTGCTACCCTAATGGTAAAGGGCTGACTGGGGAG--------GGGTTGTAGGGACATGGTGGGGGTGAAGACTCCAGACC
s panPan2.chr15              23129833 85 -  99763055 CAGGGGTCTTGTCTTGCTACCCTAATGGTAAAGGGGTGACTGGGAAG--------GGGTGGTTGGTATATGGTAGCGACGGAGACTCCAGCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        51654 85 -    378907 CAGGGGTCTTGTCTTGCTACCCTAATGGTAAAGGGGTGACTGGGAAG--------GGGTTGTAGGGACATGGTGGGGGTGAAGACTCCAGACC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25642832 85 - 121039945 CAGGGGTCTTGTCTTGCTACCCTAACGGTAAAGGGGTGACTGGGAAA--------GGGTGGTAGGAACATGGTGGGGGAGGAGACTCCAGCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113463005 84 - 169600520 T-GGGGTCTTGTCTTGCTCCCCTAATGGTAAAGGGGTGACTGGGAAG--------GGGTGGTTGGTACATGGTGGGGGCGGAGACTCCAGCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106533724 84 - 171882078 CAGGGGTCTTGTGTTGCT-ACCTAATGGTAAAAAGGTGACTGGGAAG--------GCGTTGTAGGGACATGGTGGGGGTGAAGACTCCAGACT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9922490 85 +  10730278 CAGGGATCTTGTCTTGCTACCCTAATGGTAAAGGGGTGACTGGGAAG--------GGGTGATAGGGACACGGTGGGGGTGAAGATTCCAGCCC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3119846 85 +  24206276 CAGGGGTCTTGTCTTGCTACCCTAGTGGTAAACGGGTAACTGGGAAG--------GGGTGGCAGGGACATGGTGGGGGTGAAGACTCTAGACC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1606604 85 +   1678425 CAGAGGTCGTGTGTTGCTACCCTAATTGTAACGGGGTGACTGGGAAG--------GGGTGGTAGGGACATGGTGGCGGTGGAGACTCCAGCCC
i manLeu1.NW_012107797v1    C 0 C 0
s aotNan1.NW_018511953v1      3093580 80 +   3745603 CAGGGGTCTTGTCTTGCTAGGCTAATAATAAAGGCGTGACTGGGAGG--------GG-----AGGGACACGGTGGGGGCGGAGACTCCAGCCC
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5823000 93 -  61074082 CAGGGGTCTTATCTTGCTAGTTTAGGGATAAAAGGGTAACTGGGAAGGAATGATAGGGTGGCAGGGACAGGGTGGGAGCAGAGCCCCCGGCCC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             400769 82 -    584178 CAGGGGCCCCATGTTGCTATTCTAGGGATAAA-GGGTGGCAGGGAAG--------GAG--GAGAGGAAGAAGTGGGGGCAGAGCCCCCGGTCC
i dasNov3.JH564958          I 1800 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1      3813922  0 -   4111199 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=143823.000000
s hg38.chr15_KI270850v1_alt    128620 30 +    430880 CACTTCTCCAGGCTTATGCTGACAGGGGCC-
s panPan2.chr15              23129918 30 -  99763055 CGCTTCTCCAGGCTTATGCTGACAGGGGCC-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        51739 30 -    378907 CACTTCTCCCGGCTTATGCTGACAGGGGCC-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25642917 30 - 121039945 CACTTCTCCAGGCTTATGCTGACAGGGGCC-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113463089 30 - 169600520 CACTTCTCCAGGCTTATGCTGATAGGGGCC-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106533808 30 - 171882078 CACTTCTCCAGGCTCATGCTGACAGGGGCC-
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9922575 30 +  10730278 CGCTTCTCCAGGCTTATGCTGACAGGGGCC-
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3119931 30 +  24206276 CACTTCTCCAGGCTTATGCTGACAGGGGCC-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1606689 29 +   1678425 CACTTCTCCAGGCTT-TGCTGACAGGGGCC-
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       244067 29 +   4111199 CACTTCTCCAGTCTT-TGCTGACAGTGGCC-
i colAng1.NW_012116021v1    T 60142 C 0
s aotNan1.NW_018511953v1      3093660 29 +   3745603 CCCTTCTCCAGGCCT-TGCTGACAGGAGCA-
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5823093 29 -  61074082 CACTTCTCCAGGTTT-TGCTTGCTGGTGTC-
i canFam3.chr9              C 0 I 2
s dasNov3.JH564958             400851 30 -    584178 CGTGTCTCTGGGCTT-TGCCTGCCAGCATCA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=14876.000000
s hg38.chr15_KI270850v1_alt    128650 5 +    430880 TGCTT
s panPan2.chr15              23129948 3 -  99763055 TGC--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        51769 5 -    378907 TGCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25642947 5 - 121039945 TGCTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113463119 4 - 169600520 TGCT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106533838 5 - 171882078 TGCTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9922605 5 +  10730278 TGCTT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3119961 5 +  24206276 TGCTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1606718 5 +   1678425 TGCTT
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       244096 5 +   4111199 TGCTT
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1      3093689 5 +   3745603 TGCTG
i aotNan1.NW_018511953v1    C 0 C 0
s dasNov3.JH564958             400881 5 -    584178 GGCTT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr9                5823122 2 -  61074082 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=8578.000000
s hg38.chr15_KI270850v1_alt    128655 10 +    430880 TTATTTATTT
s panPan2.chr15              23129951  2 -  99763055 --------TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        51774 10 -    378907 TTATTTATTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25642952 10 - 121039945 TTATTTATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113463123  1 - 169600520 ---------T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106533843  4 - 171882078 TTA------T
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9922610  4 +  10730278 TTA------T
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3119966 10 +  24206276 TTATTTATTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1606723  7 +   1678425 TTA---ATTT
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       244101 10 +   4111199 TTATTTATTT
i colAng1.NW_012116021v1    C 0 I 86075
s aotNan1.NW_018511953v1      3093694 10 +   3745603 TTATTTATTT
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=62955.000000
s hg38.chr15_KI270850v1_alt    128665 17 +    430880 TTATTTTTATCCC-ATGA
s panPan2.chr15              23129953 17 -  99763055 TTATTTTTATCCC-ATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        51784 17 -    378907 TTATTTTTATCCC-ATGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25642962 17 - 121039945 TTATTTTTATCCC-ATGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113463124 17 - 169600520 TTATTTTTATCCC-ATAA
i rheMac8.chr7              C 0 I 11
s macFas5.chr7              106533847 17 - 171882078 TTATTTTTATCCC-ATGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9922614 17 +  10730278 TTATTTTTATCCT-ACAA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3119976 17 +  24206276 TTATTTATATCCT-GTGA
i chlSab2.chr29             C 0 I 2
s manLeu1.NW_012107797v1      1606730 17 +   1678425 TTATTTTTATCCC-ATGA
i manLeu1.NW_012107797v1    C 0 I 1
s colAng1.NW_012116021v1       330186 11 +   4111199 ------TTATTCC-ATGA
i colAng1.NW_012116021v1    I 86075 I 2
s aotNan1.NW_018511953v1      3093704 18 +   3745603 TTATATTTATCCCTATGA
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=-7375.000000
s hg38.chr15_KI270850v1_alt    128682  7 +    430880 -----TGT-TTTT
s panPan2.chr15              23129970  7 -  99763055 -----CTT-AAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        51801  7 -    378907 -----TGT-TTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25642979  8 - 121039945 -----CTTATTTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106533864  5 - 171882078 -----CTT-TT--
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9922631  5 +  10730278 -----CTT-TT--
i cerAty1.NW_011999477v1    C 0 I 2
s chlSab2.chr29               3119995  5 +  24206276 -----TTT-TT--
i chlSab2.chr29             I 2 I 1
s manLeu1.NW_012107797v1      1606748  5 +   1678425 -----TTT-TT--
i manLeu1.NW_012107797v1    I 1 I 1
s colAng1.NW_012116021v1       330199  5 +   4111199 -----GTT-TT--
i colAng1.NW_012116021v1    I 2 C 0
s aotNan1.NW_018511953v1      3093722 10 +   3745603 GGTTTTTT-TT--
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e rheMac8.chr7              113463141 11 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=74406.000000
s hg38.chr15_KI270850v1_alt    128689 33 +    430880 TTAAATCCCGTAACTTCTTTTTCAGA--ACTTTT-T
s panPan2.chr15              23129977 33 -  99763055 AAAAATCCCATAACTTCCTTTTCGTA--ACTTTT-T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        51808 33 -    378907 TTAAGTCCCGTAACTTCTTTTTCAGA--ATGTTT-T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25642987 23 - 121039945 TTTAATCCCATAACTTCTTTTTC-------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113463152 33 - 169600520 TAAAATCCCATAACTTCCTCTTCATA--ACTTTT-T
i rheMac8.chr7              I 11 C 0
s macFas5.chr7              106533869 28 - 171882078 -----TCCCATAACTTCTTCCTCATA--ACTTTT-T
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9922638 34 +  10730278 -TTAATCCCATAACTTCTTTTTCATAATACTTTT-T
i cerAty1.NW_011999477v1    I 2 I 46
s chlSab2.chr29               3120001 33 +  24206276 TTTAATACCATAACTTCTTTTTCATA--ACTTTTA-
i chlSab2.chr29             I 1 C 0
s manLeu1.NW_012107797v1      1606754 32 +   1678425 AAAAATCCCGTGACTTCTTTTTCATA--ACTTTT--
i manLeu1.NW_012107797v1    I 1 C 0
s colAng1.NW_012116021v1       330204 33 +   4111199 TTAAATCCAGTAAATTCTTTTTCATA--ACTTTT-T
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1      3093732 32 +   3745603 TTTAATCTCATAACGTCCTTTTTATA--AATTTT--
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=48058.000000
s hg38.chr15_KI270850v1_alt    128722 31 +    430880 AAAAAAACTTTTCATAAAACTTTTTTTTTTT
s panPan2.chr15              23130010 27 -  99763055 -AAAATACTTTTCATAAAAC---ATTTTTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        51841 28 -    378907 AAAAATACTTTTCATAAAAC---TTTTTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25643010 30 - 121039945 -ATAATACtttttttaagctttttttttttt
i nomLeu3.chr6              C 0 I 315
s rheMac8.chr7              113463185 27 - 169600520 -AAAAAACTTTTCATAAAAC---ATTTTCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106533897 30 - 171882078 AAAAAAACTTTTCAGGCAAC-TTTTTTTTTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3120034 28 +  24206276 AAAATAACTTTTCATAAAAC---TTTTTTCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1606786 28 +   1678425 TTTGTAACTTTTCATAAAAC---ATTTTCTA
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       330237 28 +   4111199 AAAAAAACTTTCTGTAAAAC---TTTTTTTC
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1      3093764 22 +   3745603 ----ACACTTTTCATAAAAT---TTTTCT--
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e cerAty1.NW_011999477v1      9922672 46 +  10730278 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=-11068.000000
s hg38.chr15_KI270850v1_alt    128753 16 +    430880 ACTTTTTTCCCACATC-
s panPan2.chr15              23130037 15 -  99763055 ACTTTTTT-TCACAAC-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        51869 16 -    378907 ACTTTTTTTCCACAAT-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25643355 16 - 121039945 ACTTTTCTTCCACAAC-
i nomLeu3.chr6              I 315 C 0
s rheMac8.chr7              113463212 12 - 169600520 ACTTTTTTTCCC-----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106533927 12 - 171882078 ACTTTTTTTGGA-----
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3120062  1 +  24206276 A----------------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1606814  1 +   1678425 C----------------
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       330265  5 +   4111199 ACAAC------------
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1      3093786 17 +   3745603 ACTTTTTATCCACAATT
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e cerAty1.NW_011999477v1      9922672 46 +  10730278 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=203225.000000
s hg38.chr15_KI270850v1_alt    128769 60 +    430880 TTT-TTTTGCCACAACTTTTCCACAGTATTTTTT---ATCCCGTAACTTTTTCATCCCACAACT
s panPan2.chr15              23130052 60 -  99763055 TTC-TTTTGCCACAACTTTTCCACAGCATTTTTT---ATCCCATAACTTTTTCATCCCACAACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        51885 60 -    378907 GTT-TTTTGCCACAACTTGTCCACAGTATTTTTT---ATCCCGTAACTTTTTCATCCCACAACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25643371 60 - 121039945 TTT-TTTTGCCACAACTTTTCCACAATATTTTTT---ATCCCATAACTTTTTCATCCCACAACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113463224 60 - 169600520 -TTCTTTTGCCACAACTTTTACACAGCGTTTTTT---ATCCCATAACTTTTTCATCCCACAACT
i rheMac8.chr7              C 0 I 4
s macFas5.chr7              106533939 59 - 171882078 -CT-TTTTGCCACAATTTTTCCACCATATTTTTT---ATCCCATAACTTTTCCATCCCACAACT
i macFas5.chr7              C 0 I 3
s cerAty1.NW_011999477v1      9922718 59 +  10730278 TGT-TTTTGCAACAACTTTTCCACAACATTGTTT---ATCCCATAACTTTTTCAT-CCACAACT
i cerAty1.NW_011999477v1    I 46 I 4
s chlSab2.chr29               3120063 54 +  24206276 CTT-TTTTGACAC-ACTTTTCCACG-----TTTT---GCCCCATAACTCTTTCATCCCATAACT
i chlSab2.chr29             C 0 I 14
s manLeu1.NW_012107797v1      1606815 58 +   1678425 TTT-TTTTGCCACAACTTTTTAACA-----CTTTTTAATCCCATAACTTTTTTACCCCATAACT
i manLeu1.NW_012107797v1    C 0 I 4
s colAng1.NW_012116021v1       330270 58 +   4111199 --T-TTTTGCCACAACTTTTCCACCGTATTTTTT---ATTCCATAACTTTTTCATCCCATAATT
i colAng1.NW_012116021v1    C 0 I 1
s aotNan1.NW_018511953v1      3093803 57 +   3745603 TTT-TTTTGCCACAACTTTTCCACA---TTTTTT---ATCTGAGGACTTTTTTATCCCATAACT
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=7443.000000
s hg38.chr15_KI270850v1_alt    128829 13 +    430880 TT----AATTCCTGTAA
s panPan2.chr15              23130112 17 -  99763055 TTTAAAAATTCCCGTAA
i panPan2.chr15             C 0 I 3
s gorGor5.CYUI01015946v1        51945 17 -    378907 TTTTTTAATTCCTGTCA
i gorGor5.CYUI01015946v1    C 0 I 1
s nomLeu3.chr6               25643431 15 - 121039945 TTTTTTA--TCCCATAA
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr7              113463288 13 - 169600520 ----TAAATTCCCATAA
i rheMac8.chr7              I 4 C 0
s macFas5.chr7              106534001 11 - 171882078 ------AATTCCTGTAA
i macFas5.chr7              I 3 C 0
s cerAty1.NW_011999477v1      9922781 10 +  10730278 ----TA---TCCCGTAA
i cerAty1.NW_011999477v1    I 4 C 0
s manLeu1.NW_012107797v1      1606877 11 +   1678425 ----TAA--TCCCATAA
i manLeu1.NW_012107797v1    I 4 C 0
s colAng1.NW_012116021v1       330329 13 +   4111199 ----TTAATTCCTGTAA
i colAng1.NW_012116021v1    I 1 T 85701
s aotNan1.NW_018511953v1      3093860  8 +   3745603 ---------TTTAGTAG
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e chlSab2.chr29               3120117 14 +  24206276 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=926.000000
s hg38.chr15_KI270850v1_alt    128842 1 +    430880 T
s panPan2.chr15              23130132 1 -  99763055 C
i panPan2.chr15             I 3 C 0
s gorGor5.CYUI01015946v1        51963 1 -    378907 T
i gorGor5.CYUI01015946v1    I 1 C 0
s rheMac8.chr7              113463301 1 - 169600520 C
i rheMac8.chr7              C 0 I 3
s macFas5.chr7              106534012 1 - 171882078 C
i macFas5.chr7              C 0 I 1
s cerAty1.NW_011999477v1      9922791 1 +  10730278 C
i cerAty1.NW_011999477v1    C 0 I 1
s manLeu1.NW_012107797v1      1606888 1 +   1678425 C
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       244641 1 +   4111199 T
i colAng1.NW_012116021v1    T 85701 C 0
s aotNan1.NW_018511953v1      3093868 1 +   3745603 T
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886 0 -    584178 C
e canFam3.chr9                5823122 2 -  61074082 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e chlSab2.chr29               3120117 14 +  24206276 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e nomLeu3.chr6               25643446 1 - 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=508400.000000
s hg38.chr15_KI270850v1_alt    128843 146 +    430880 TTTTTAGTTTGTGTTCTTTTAATAAACACACTTACATGG-----TTACAATTTTGTAAGAATAAAAACCGATTATCTCATGCCAAGCATGCCCAGC-ATTTGCACAGTCTCAATACCTTTAATACTATAGTTTTCAAGACACAC-----AAAATTTT
s panPan2.chr15              23130133 149 -  99763055 TTTTTAGTT--TGTTCCTTTAATAAACACACTTGCATAGTTACATTACAATTTCATAAAAATAAAAACTGATTATCTCATGCCAAGTGTCCCCAGC-ATTTTCACAGTCTCAATACTCTTAATACTATAGTTTTCAAGACATAT-----AAAATTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        51964 144 -    378907 TTTTTAGTTTGTGTTCTTTTAATAAACACACTTACATAG-----TTACAATTTTGTAAGAATAAAAACCGATTACCTCATGCCAAGCATGCCCAGA-ATTTGCAGAGTCTCAATACCC--AATACTATAGTTTTCAAGACACAC-----AAAATTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25643447 144 - 121039945 --TTTGGTTTGTGTTCTTTAAATAAACACACTTGCATAG-----TTACAATTTTATAAAAATAAAAACCGATTATCTCATGCCAAGCATGCCCAGC-ATTTGCACAGTCTCAATACCTTTAACACCAGAGTTTTCAAGACACAC-----AAAATTTT
i nomLeu3.chr6              I 1 C 0
s rheMac8.chr7              113463305 146 - 169600520 TTTTTAGTTTGTGTTCTTTTAATAAACACACTTGCATAG-----TTACAAATTTGTAAAAATAAAAAACGATGATCTCATGCCAAGTGTGCCCAGG-ATTTGCACAGTCTCAATATCTTTAATACTATAGTTTTCAAGACACAC-----AACATTTT
i rheMac8.chr7              I 3 C 0
s macFas5.chr7              106534014 146 - 171882078 TTTTTAGTTTATGTTCTTTTAATAAACACACTTACATAG-----TTACAATTTTGTGAGAATAAAAACCGATTATCTCATGACAAGCGTGCCCAAC-ATTTGCACAGTCTCAATACCTTTAATACTATAGTTTTCAAGACACAC-----AAAAATTT
i macFas5.chr7              I 1 C 0
s cerAty1.NW_011999477v1      9922793 143 +  10730278 ---TTGGTTTGTGTTCTTCTAATAAACACGCTTGCACAG-----TTACAATTTTGTAAAAATAAAATCCGATGATCTCATGCCAAGCATGCCCAGC-ATTTGCACAGTCTCAATACCTTTAACACCATAGTTTCCAAGACACAC-----AAAATTTT
i cerAty1.NW_011999477v1    I 1 C 0
s chlSab2.chr29               3120131 141 +  24206276 --CTTTTAGTTTGTTCTTTTAATAAACACACTTACATAG-----TTACAATTTTGTAAAAATAAAAACAGATTATCTCATGCCAAGCGTGCCCAGT-ATTTGCACGCTAT-AGTA--TTTAATACTATAGTTTTCAAGACACAC-----ATAatttt
i chlSab2.chr29             I 14 I 346
s manLeu1.NW_012107797v1      1606889 147 +   1678425 ----TTTTTTGTGTTCTTTTAATAA--ACACTTGCATAGTTATATTACAGTTTTGCAAAAATGAA---AGGGTATCTCATGCCAAGCATGGCCAGT-ATTTGCTCAATATCAATACGTTTAATACTATAGTTTTCAAGACACACAAAATAAAATTTT
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       244642 152 +   4111199 TTTTCAGTTTGTGTTCTTTTAATAA--ACACTTGCATAGTTATATTACAATTTTGTAAAAATAAAAAC--ATTATCTCATGCCAATTGTGCCCAGCAATTTGCACAGTCTCAATACCTTTAATACTATGGTTTTCAAGACACACAAAATAAAATTT-
i colAng1.NW_012116021v1    C 0 I 1
s aotNan1.NW_018511953v1      3093869 138 +   3745603 -------------TTCTTTTAATAAACACACTTGCATAGCTATATTACAATTTTGTAAAAACAAAAACAGAGTATCTCATGCCAAGTGTGCCCAGC-ATTTGCAGAGTCTCAATACCTTTAATACTATAGTTGTTAAGACACAC-----AAAATTTT
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886   0 -    584178 C
e canFam3.chr9                5823122   2 -  61074082 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=9725.000000
s hg38.chr15_KI270850v1_alt    128989 5 +    430880 TAGGC
s panPan2.chr15              23130282 5 -  99763055 AAGGC
i panPan2.chr15             C 0 I 1
s gorGor5.CYUI01015946v1        52108 5 -    378907 TAGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25643591 5 - 121039945 AAGGC
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr7              113463451 5 - 169600520 AAGGC
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              106534160 5 - 171882078 AAGGC
i macFas5.chr7              C 0 I 1
s cerAty1.NW_011999477v1      9922936 5 +  10730278 ACGGC
i cerAty1.NW_011999477v1    C 0 I 1
s manLeu1.NW_012107797v1      1607036 5 +   1678425 AAGGC
i manLeu1.NW_012107797v1    C 0 I 1
s colAng1.NW_012116021v1       244795 4 +   4111199 AAGT-
i colAng1.NW_012116021v1    I 1 I 2
s aotNan1.NW_018511953v1      3094007 5 +   3745603 AAGGC
i aotNan1.NW_018511953v1    C 0 I 1
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886 0 -    584178 C
e canFam3.chr9                5823122 2 -  61074082 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e chlSab2.chr29               3120272 346 +  24206276 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=329166.000000
s hg38.chr15_KI270850v1_alt    128994 83 +    430880 AAAACAGCACCTTGAAACAATCTAATAATTTATTACATTACAGTAGCATCACAGAAGCAGTCAATAATgccactttagacaaa
s panPan2.chr15              23130288 83 -  99763055 AAAACAGCACTTTGCAACAATTTAATAATTTATTACATTACAGTAGCATCACAGTAGCAGTGAATAATCccactttaggcaac
i panPan2.chr15             I 1 C 0
s gorGor5.CYUI01015946v1        52113 83 -    378907 AAAACAGCACCTTGAAACAATTTAATAATGTATTACATTACAGTAGCatcacagaagcagtcaataatgccactttagacaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25643597 83 - 121039945 AAAACAGCACTTTGCAACAATTTAATAATTTATTACATTACAGTAGCATCACAGTAGCAGTCAATAATGCCACTTTAGGCAAC
i nomLeu3.chr6              I 1 C 0
s rheMac8.chr7              113463457 83 - 169600520 AAAACAGCACTTTGCAACAATTTCCTAATTTATTACATTACAGTAGCatcacagtagcagtcaataatggcactttagacaac
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              106534166 80 - 171882078 AAAACAGCACCTTGCAACAATTTCATAATTTATTACATTATAGTAGCATCAC---AGAAGTCAATAATgccactttagacaaa
i macFas5.chr7              I 1 C 0
s cerAty1.NW_011999477v1      9922942 83 +  10730278 AAAACAGCACTTTGCAACAATTTCCTAACTTATTGCATTGCAGTAGCatcacagtagcagtcaataatggcactttcgacaac
i cerAty1.NW_011999477v1    I 1 C 0
s chlSab2.chr29               3120618 80 +  24206276 AAAACAACACTTTGCAACAATTTAATAATTTATTACATTACAGTAACATCG---CAGCAGTCAACAATGCCACTTTAGGCAAA
i chlSab2.chr29             I 346 I 49
s manLeu1.NW_012107797v1      1607042 83 +   1678425 AAAACAGCACTTTGCAACAATTTAATAGCTTATTACATTACAGTAGCATCACACCAGCAGTCAATAATgccactttaggcaaa
i manLeu1.NW_012107797v1    I 1 C 0
s colAng1.NW_012116021v1       244801 78 +   4111199 AAAACAGCACTTCACAACGA-----TAATTTATTACATTACAGTAGCATCACAGCAGTATTCAATAATgccactttaggcaaa
i colAng1.NW_012116021v1    I 2 C 0
s aotNan1.NW_018511953v1      3094013 83 +   3745603 AAAACAGCACTTTGCAGCAATTGAATAATTTATTACATTACGGGAGCatcacagcagcagtcaataatgccgctttagacaaa
i aotNan1.NW_018511953v1    I 1 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=67651.000000
s hg38.chr15_KI270850v1_alt    129077 28 +    430880 aa----tcagtatttccatcatgcattctgtg
s panPan2.chr15              23130371 32 -  99763055 agtgtttctgtatttccattatacattctgtt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        52196 28 -    378907 aa----tcagtatttccatcatgcattctgtg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25643680 32 - 121039945 AGTGTTTCAGTATTTCCATTATACATTCTGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113463540 27 - 169600520 agtcttgcagtatttccattatacagt-----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106534246 28 - 171882078 agt----cagtatttccattatacattctgtt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9923025 32 +  10730278 agtctttcagtacttccattatacattctgtt
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012107797v1      1607125 32 +   1678425 agtttttcagtatttccattatacattctgtt
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       244879 31 +   4111199 agtctttcagtatttcca-tatagattctgtt
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1      3094096 30 +   3745603 --aggctcaggatttccatcttacgttctgtt
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e chlSab2.chr29               3120698 49 +  24206276 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=564940.000000
s hg38.chr15_KI270850v1_alt    129105 142 +    430880 tataagaattcataaatcggtaaaagtcgttctaagaaaacttggcaaatacagctttggactggaattggcatttctttCTCTACTTTTCCTTCCCCTAGATTCTTTGTTTTAAGCTACAGTATTCGTATTTTAAAATGTT
s panPan2.chr15              23130403 141 -  99763055 tacaggaattcatcaattggtaaaagtcattctaagaaaacttggcaaa-aaaggtttGGACTGGAATTGGCATCTCTTTCTCTACTTTTCCTTCCTCCAGTTTCTTTGTTTTAAACTACTGTATTCATATTTTAAAATGTT
i panPan2.chr15             C 0 I 142
s gorGor5.CYUI01015946v1        52224 142 -    378907 tataagaattcataaatcggtaaaagtcattctaagaaaacttggcaaatacagctttggactggaattggcatttctttGTCTACTTTTCCTTCCCCTAGATTCTTTGTTTTAAACTACAGTATTCATATTTTAAAATGTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25643712 142 - 121039945 TATAAGAATTCACAAATTGGTAAAAGTCATTCTAAGAAAACTTGGCAAATAAAGCTTTGCATTGGAATTGGCATTTCTTTCTCTACTTTTCCTTCCCCCAGTTTCTTTCTTTTAAACTACGGTATTCATATTTTAAAATGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113463567 140 - 169600520 --caggaattcataaattgatagaagtcattctaagaaaacttggcaaataaaggttcagactgaaattggcatctctttCTCTACTTTTCCTCCCCCCAGGTTCTTTGTTTTAAACTACAGTATTCATATTTTAAAATGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106534274 142 - 171882078 tacaagaaatcgtaagttggtaaaagtcattctaagaaaacttggcaaataaagctttggactggaattggcatttctGTCTCTACTTTTCCTTCCCCTAGATTCTTGGTTTTACACTACAGTGTTCATATTTTAAAATGTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9923057 142 +  10730278 gacaggaattcataaattggtaaaagtcattctaagaaaactcggcaaataaagcttggcattggaattggcatttctttCTCTACTTTTCCTTCCCCCAGGTTCTTTCTATTAAACTACAGTATTGACATTTTAACATGCT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3120747 141 +  24206276 TATAAGAATTCATAAATTGGTAAAAGTCATTCTAAGAAAACTTGGCAAATAAAGCTTTGGACTGGAATTGGCATTTCTTTCTCTACTTTTCCTTCCCCTAGTTTCTTTTTTTTAAACTATAGTATTCATA-TTTAAAATGTT
i chlSab2.chr29             I 49 C 0
s manLeu1.NW_012107797v1      1607157 137 +   1678425 tacaataattcataaattggtaaaatttattctaagaaaacttggcaactaaagctttggactggaa-tggcacttctttCTCCACTTTTCCTTCCCACCATTTC----TTTTAAATTACAGCATTCATATTTTAAAATGTT
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       244910 141 +   4111199 tacaagaattcgtaaattggtaaaagttattctaagaaaacttggcaaataaagctttggactggaattggcatttctttCTCTACTTTTCCTTCTCC-AGTTTCTTTCTTTTAAGCTACAGTATTCATATTTTAAAATGTT
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1      3094126 138 +   3745603 cacaagtgttcatacattggtaaaagtcattcttaggaaacttggcaaataaagctttggactggaattggcatttctttCTCTACTTTTCCTTCTCCCGGTTTC----TTTTAAACTATGACATTCATATTTTAAAATGTT
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886   0 -    584178 C
e canFam3.chr9                5823122   2 -  61074082 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=15282.000000
s hg38.chr15_KI270850v1_alt    129247 4 +    430880 TTAA
s gorGor5.CYUI01015946v1        52366 4 -    378907 TTAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25643854 4 - 121039945 TTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113463707 4 - 169600520 TTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106534416 4 - 171882078 TTAA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9923199 4 +  10730278 TTAA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3120888 4 +  24206276 TTAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1607294 4 +   1678425 TCAA
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       245051 4 +   4111199 TTAA
i colAng1.NW_012116021v1    C 0 I 85696
s aotNan1.NW_018511953v1      3094264 4 +   3745603 TTAA
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886 0 -    584178 C
e canFam3.chr9                5823122 2 -  61074082 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=134983.000000
s hg38.chr15_KI270850v1_alt    129251 59 +    430880 ATTATTTTAAGACATTAATTTAACAGTTACATTTTTGAATA-----G-----TTA---T-TTGAAAGTGA--CTG
s gorGor5.CYUI01015946v1        52370 59 -    378907 ATTATTTTAAGACATTAATATAGCAGTTACATTTTTGAATA-----G-----TTA---C-TTGAAAGTGA--CTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25643858 61 - 121039945 TTTATTTTAAAAC-TTAAGATAGCAGTTACATTTTTCAATA-----GTTCTATTC---T-TTTAAAATGA--C--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113463711 64 - 169600520 CTTATTTCAAAACATTAACGGAGCAGTTACATTTTTCAATAACTATA-----TTA---T-TTTAAAGTGA--CTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106534420 56 - 171882078 CTTATTTCAAGATATTA---TAGCAGTTATGTTTTTGAATA-----G-----TTA---T-TTGAAAGTGA--CTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9923203 66 +  10730278 CTTATTTTGAAACATTAAGATAACAGTTACATTTTTGAATAGTTATA-----TTA---T-TTTAAAGTGACTCTG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3120892 57 +  24206276 CTTATTTCAAAACATTAAGATAGCAGTTACATTTTTGAATA-----G-----TTA---T-TTAAAAATGA--C--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1607298 59 +   1678425 CTTATTTCAGAACGTTAAGATAGCAGTTACATTTTT-AATA-----G-----TTATTTT-TTTTAAATGA--C--
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       330751 59 +   4111199 CTTATTTCAAGACATTAATACAGCAGTTACATTTTTGAATA-----G-----TTA---T-TTGAAAGTGA--CTG
i colAng1.NW_012116021v1    I 85696 T 85306
s aotNan1.NW_018511953v1      3094268 60 +   3745603 GTAATTTCAAAACATTAAGATAGTAGTTACATGTTTGAATA-----G-----TTA---TCTTGAAAATGA--CTC
i aotNan1.NW_018511953v1    C 0 I 2
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=708840.000000
s hg38.chr15_KI270850v1_alt    129310 235 +    430880 TAAGATAAAGTTTTAGAGAA--TCTATTTTGGATAGG-----GTTGATTTACATTTTCACATTTTCTAAAAATCAGCTTTGGTTTTAGAACTGATTGTTTTT----CATTTCAGGAAAACCTATCAGGTTTAATCTATTACTTTAAAAATAATTATCATATATTGCAGTCTTT----AAATAGGTATTTTGATTCTTTACTTCCTACAGAAATTCAAATTTATTCAG-TCGAACTCACATTTTAAAATTCT
s gorGor5.CYUI01015946v1        52429 234 -    378907 TAAGATAAGGTTTTAGAGAA--TCTATTATGGATAGG-----GTTGACTTACATTTTCACATTTTCTAAAAATCAGCTTTGGTTTTAGAACTGATTGTTTTT----CATTTTGGGAAAACCTACCAGGTTTAATCAATTACTTTAAAAATAATTATCATATTTTGCAGTCTTT----AAATAGGTGTTTTGATTCTTTACTCCCTAAAGAAATTCAAATTTATTCAG-TTGAAGTCACATTTT-AAATTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25643919 233 - 121039945 TAAGATAAAGTTTTAGAGAAACTATATTATGGATAGG-----GCTGGTTTACATTTTCACCTTTTCTAAATATCAGCTTTGGTTTTAGAACTGACTTTTTTT----CATTTCTGGAAAACCTATCAGGTTTAATCAAATACTTTAAAAATGATT---ATATATTGCAATCTTT----AAATATGT-TTTTAGTTCTTTACTTCCTACAGAAATTCAAATTGATTCAG-TTGAACCCACACTTTAAACTTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113463775 236 - 169600520 TAAGATAAAGTTTTAGAGAAACTATATTATGGATAGG-----GCTGAGTTACATTTTCACATTTTCTAAATATCAGCTTTGGTTTTAGAACTGAT-TTTTTT----CATTTCTGGAAAACTTATCAGGTTTAATCAGATACTTTAAAAATAATGACCATATATTGCAATCTTT----AAATAGGTATTTTGATTCTTTACTTCCTACAGAAATTCAAATTTATTCAG-TTGAACTCACACTTTAAAATTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106534476 234 - 171882078 TAAGATAAAGTTTTAGAGAAA--GTATTATGGATAGG-----GCTGATTTACATTTTCATGTTGTATAAAACTCAGCTTTGGTTTTAGAACTGAT-TTTTTT----CATTTCAGGGAAACCTATCAGGTTTAATCAAATAGTTTAAAAATAATTATGATATATTGCAGTCTTT----AAATTGATATTTTGATTCTTTACTTCCTACAGAAATTCACATTTATTCAGTTTGAACTCACATTTTAAAATTC-
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9923269 232 +  10730278 TAAGATAAAGTTTTAGAGAAACTTTATTATGGATAGG-----GCTGATGTACCTTTTCACATTTTCTAAATATCAGCTTTGGTTTTAGAACTGATATTTTTT----CATTTCTGGAAAACCTATCAGGTTTAATCAAAAACTTTAAAAATAATGACCATATATTGCAATCTTT----AAATAGGTATTTTGATT-----CTTCTAACAGAAATTCAAATTTATTCAG-TTGAACTCACATTTTCAAATTTT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3120949 228 +  24206276 TAACATCAAGTTTTAGAGAAACTCTATTATGGATAGG-----GCTGATTTACATTTTCACATTTTCTAAAAATCAGCTTTGGTTTTAGAATTGAT-TTTTTT----CATTTCTGGAAAACCT--AAAGTTTAATCAAATACTTTAAAAATGATTATCATATATTACAATCTTT----AAATAGGTATTTTGATT-----CTTCCTACAGAAATTCAAATTTATTCAG-TTGAACTCACATTT-TAGATTTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1607357 235 +   1678425 TAAGATAAAGTTTTAGAGAAATTATATTATAGGTAGG-----GCTGGTTTATGTTTTCAAATTTTCTAAAAATCATCTTTGCTTTTAGAACTATT-TTTTTTTTTCCATTTCTGGAAAACCTTGCAGGTTTAATCAAATACTTTAAAAATAATTATTATATATTGCAATCTTT----AAATAGGTGTTTTGATT-----CTTCCTACAGAAATTCAAATTTATTCTG-TTGAACTCACATTTAAAAATTCT
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       245504 241 +   4111199 TAAGATAAAGTTTTAGAGAAACTATATTCTGGATAGA-----GCTGATTTACATTTTGAAAATTTCTGAAAATCGGCTTTTGTTTTAAAATTGATTTTTTTT----CATTTCTGGCAAGCCTATCAGGTTTAATCAAATACTTTAAAAATGATTATCACATACTGCAATCTTTAAACAAACAGGTATTTTGATTCTTTACCTCCTACAGAAATTCAAATTTATTCAA-TTGAACTCACATTTTAAAATTCT
i colAng1.NW_012116021v1    T 85306 C 0
s aotNan1.NW_018511953v1      3094330 237 +   3745603 TAAGATAAAGTTTTGGAGAAGCTATATTATGGATAGGATAGAACTGATTTACATTTTCAAATTTTCTTAAAATCAGCTTTGGTTTCAGAACTGATTTTTATT----CATTTCTGGAAAATCTATCAGGTTTAATAAAATCCTTTGAAAATGATTATCATGTATTGCACTCTTT----AAATAGGTATTTTGATT-----CTTCCTACAGAAATTCAAATTTATTCAG-TTGAACTCACATTTTAAAACTCT
i aotNan1.NW_018511953v1    I 2 I 1850
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886   0 -    584178 C
e canFam3.chr9                5823122   2 -  61074082 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=94604.000000
s hg38.chr15_KI270850v1_alt    129545 35 +    430880 CTCTTTCTG-CTGAACTCTAACCTTCTAATATTGCC
s gorGor5.CYUI01015946v1        52663 35 -    378907 ATCTTTCTG-CTGAACTCTAACCTTCTAATGTTGCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25644152 36 - 121039945 ATGTTTCTGATTAAACTCTACCCTTCTAATGTTGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113464011 35 - 169600520 ATATTTCTG-ATGAACTCTAACCTTCTAATGTTgcc
i rheMac8.chr7              C 0 I 147
s macFas5.chr7              106534710 34 - 171882078 -TGTTTCTG-CTGAACTCTAACCTTCTAATGTTGCC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9923501 35 +  10730278 ATATTTCTG-ATGATCTCTAACCTTCTAATGTTGCC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3121177 35 +  24206276 ATGTTTCTG-ATTAACTCTAACCTTCTAATGTTGCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1607592 35 +   1678425 ATGTTTCTG-ATAAACTCTAACCTTCCAATGTTGCC
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       245745 35 +   4111199 GTGTTTCTG-CTGAACTCTAACCTTCTAATGTTGCC
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3094567 1850 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=406337.000000
s hg38.chr15_KI270850v1_alt    129580 183 +    430880 TTCTAAGCAAATTGAAAGCTGCCTTATACTGAATGAGGAAGAGAACAAATACTTGGCTGAATGAGGTACTGCAAGAGACTGCATGCACTTTGAAGAAAGACTTGAGTTATTGTCATAGGATTTCCATTCTCTTTAGCTTTTTCTTAAACATATGACAAAATACCTACACAGAGAGTGGTATTT
s gorGor5.CYUI01015946v1        52698 183 -    378907 TTCTAAGCAAATTGAAAGCTGCCTTATCCTGAATGAGGAAGAGAACAAATACTTGGCTGAATGAGGTACTGCAAGAGACTGCACGCACTTTGAAGAAAGACTTGAGTTATTGTCATAGGATTTCCATTCTCTTTAGCTTTTTCTTAAACATATGACAAAATACCTACACAGAGAGTGGTATTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25644188 178 - 121039945 TTCTAAGCAAATTGAAAGCTGCCTTATACTGAATGAGGAAGAGAACTAATACTTGGCTGAATGAGGTATTGCAAAAAACTGCATGCACTTTG----AAGACTTAAGTTATTGTCACAGGATTTCCATTCTATTTAA-TTTTTCTTAAATATATGACAAAATGCCTACACAAAGAGTGGTATTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106534744 183 - 171882078 TTCTAAGCAAATTGAAAGCTGCCTTATACTGAATGAGGAAGAGAACAAATACTTGGCTGAATGAGGTATTGCAAACGACTGCATGCACTTTGAAGAAAGACTTAAGTTATTGTCACAGGATTTCCATTCTTTTTAGCTTTTTCTTAAACATATGACAAAATTCCTACACAAAGAGTGGTATTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9923536 180 +  10730278 TTCTAAGCAAATTGAAAGCTGCCTTATACCGAATGAGGAAGAGAACAAATACTTGGCTGAATGAGGTATTGCAAA-GACTGCATG--CTTTGAAGAAACACTTAAGTTATTGTCATAGGATTTCCATTCTTTTTAGATTTTTCTGAAACATAGGACAAAATCCTTACACAAAGAGTGGTATTT
i cerAty1.NW_011999477v1    C 0 I 451
s chlSab2.chr29               3121212 183 +  24206276 TTCTAAGCAAATTGAAAGCTGCCTAATACTGAATGAGGAAGAGAACAAATAGTTGGCTGAATGAGGTATTGCAAACGACTGCATGCACTTTGAAAAAAGACTTAAGTTATTGTCATAGGATTTCCATTCTTTTTAGCTTTTTCTTAAACATATGACAAAATTCCTACACAAAGAGTGGTATTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1607627 182 +   1678425 TTCTAAGCAAATCAAAAGTGACCTTATACTGAATGAGGTAGAGCACAAATACTTGGCTGAATGAGGTATCACAAAAGACTGCATGCACTTTGAAGAAAGACTTAAGTTATTGTCATATGATTTCCATTGCTTTTAGCTTTCTCTTAAATATACGAC-AAATGCCTACACAAAGAGTGGTATTT
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       245780 183 +   4111199 TTCTAAGCAAATTGAAAGCTGCCTTATACTGAATGAGGAAGAGAACAAATACTTGGCTGAATGAGGTATTGCAAACGACTGCATGCACTTTGAAGAAAGACTTAAGTTATTATTATAGGATTTCCATTCTTTTTAGCTTTTTCTTAAATATATGACAAAATACTTACACAAAGAGTGGTATTT
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3094567 1850 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886   0 -    584178 C
e canFam3.chr9                5823122   2 -  61074082 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e rheMac8.chr7              113464046 147 - 169600520 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=258389.000000
s hg38.chr15_KI270850v1_alt    129763 150 +    430880 GAGTTAATATAGTACATTTATTTTTCAGACTGACATTCAGCTTAAATATGCCAGTATGTGATTTAATCCACAGGTACCTGATGAACACATTATTGTCAGATTGGTTACAGTTGCTAAACGCTATCTGAAGGTCATTCCTAGTCATTTATA
s gorGor5.CYUI01015946v1        52881 150 -    378907 GAGTTAATATAGTACATTTATTTTTCAGACTGACATTCAGCTTAAATATGCCAGTATGTGATTTAATCCACAGGTGCCTGATGAACACATTATTGTCAGATTGGTTACAGGTGCTAAACGCTATCTGAAGGTCATTCCTAGTCATTTATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25644366 150 - 121039945 CAGTTAATATAGTACATTTATTTTCCAGACTGACATTCAGCTTAAATATGCCAGTGCGTGATTTAATCCATAGGTACCTGATGAACACATTATTGTCAGTTTGGTTACAGATGCTAAACGCTATCTGAAGATCATTCCTAGTCATTTATA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106534927 150 - 171882078 CAGGTAATATAGCACATTTATTTTTCAGACTGACATTCAGCTTAAATATGCCAGTATGTGATTTAATCCAGAGGTCCCTGATGAACACATTATTGCCAGATAGGTTACAGATGCTAAACACTATCTGAAGGTCATTCCTAGTCATTTATA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3121395 150 +  24206276 CAGTTAATATAGCACATTTATTTTTCAGACTGACATTCAGCTTAAATATGCCAGTATGTGATTTAATCCAGAGGTCTCTGATGAACACATTATTGTCGGATAGGTTACAGATGCTAAACACTATCTGAAGGTCATTCCTCGTCATTTATA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1607809 150 +   1678425 CAGTTAATATGGTAAATTTATTTTCCAGACTGACATTCAGCTTAAATATGCCAGTATGTGATTTAATCCATAGGCAGCTGATGAACACATTATTGTCAGATTGGTTACAGATGCTAAATGCTATCTGAAGGTCATTCCTAGTCATTGATA
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       245963 149 +   4111199 CAGTTAATATAGTGAATTTA-TTTCCAGACTGACATTCAGTTTGAACATGCCAGTATGTGATTTAATCCATAGGTACCTGATGAGCACATTATTGTCAGATTGGTTACAGATGCTAAACGCTATCTGAAGGTCATTCCTAGTCATTTATA
i colAng1.NW_012116021v1    C 0 I 85299
e aotNan1.NW_018511953v1      3094567 1850 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886   0 -    584178 C
e canFam3.chr9                5823122   2 -  61074082 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e cerAty1.NW_011999477v1      9923716 451 +  10730278 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e rheMac8.chr7              113464046 147 - 169600520 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=30216.000000
s hg38.chr15_KI270850v1_alt    129913 21 +    430880 CGTGTCAGGGTAAAAGTGAAG
s gorGor5.CYUI01015946v1        53031 21 -    378907 TGTGTCAGGGTAAAAGTGAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25644516 21 - 121039945 TTTATCAGGGTAAAAGTTGAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106535077 20 - 171882078 TGTGTCA-GGTAAAAGTGAAG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3121545 20 +  24206276 TGTGTCA-GGTAAAAGTGAAG
i chlSab2.chr29             C 0 I 1386
s manLeu1.NW_012107797v1      1607959 21 +   1678425 TTTATCAGGGTAAAAGTGAAG
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       331411 21 +   4111199 TGTGTCAGGGTAAAAGTGAAG
i colAng1.NW_012116021v1    I 85299 C 0
e aotNan1.NW_018511953v1      3094567 1850 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e cerAty1.NW_011999477v1      9923716 451 +  10730278 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e rheMac8.chr7              113464046 147 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=3263.000000
s hg38.chr15_KI270850v1_alt    129934 3 +    430880 CGA
s gorGor5.CYUI01015946v1        53052 3 -    378907 CGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25644537 3 - 121039945 TGA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106535097 3 - 171882078 TGA
i macFas5.chr7              C 0 I 1383
s manLeu1.NW_012107797v1      1607980 3 +   1678425 TGA
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       331432 3 +   4111199 TGA
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3094567 1850 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886 0 -    584178 C
e canFam3.chr9                5823122 2 -  61074082 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e cerAty1.NW_011999477v1      9923716 451 +  10730278 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e rheMac8.chr7              113464046 147 - 169600520 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=81995.000000
s hg38.chr15_KI270850v1_alt    129937 114 +    430880 TTTGAACTATAAAAATACCTTTGAAATAATTTATCAATGTATTAGATAAGCTCAGTTTCAGAATGAT-AAACAAAAACTGTTAGACCAAATAACGTGGCTAATTAACAGTGGTAC
s gorGor5.CYUI01015946v1        53055 115 -    378907 TTTGAACTATAAAAATACCTTGGAAATAATTTATCAATGTATTAGATAAGCTCAGTTTCACAATGATAAAAGAAAAACTGTTAGACCAAATAACGTGGCTAATTAACAGTGGTAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25644540 114 - 121039945 TTTGAACTATAAAAATACCTTTGAAATAATTTATCAATGTATTAGGTAAATCCAGTTTCAGAATTAT-AAAGAAAAACTGTTAGACCAAATAAGGTGGCTAATTGACAGTGGTAT
i nomLeu3.chr6              C 0 C 0
s manLeu1.NW_012107797v1      1607983 114 +   1678425 TTTCAATGATAAAAGTACCTTTGAAATAATTTATCAATGTATTGGATAAAGCCAGTTTCAGAATGAT-AAAGAAAAAACATTAGACCAAATAATGTGGCTAATTAACAGTGGTAC
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       331435 106 +   4111199 TTTGAACTATCAAAATACCTTTGAAATAATTGATCAATGTATC--------CCAGTTTCAGAATGAT-AAAGAAAAACTGTTAGACCAAATAATTTGTCTAATTAACAGTGGTAC
i colAng1.NW_012116021v1    C 0 I 16
e aotNan1.NW_018511953v1      3094567 1850 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886   0 -    584178 C
e canFam3.chr9                5823122   2 -  61074082 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e cerAty1.NW_011999477v1      9923716 451 +  10730278 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e macFas5.chr7              106535100 1383 - 171882078 I
e rheMac8.chr7              113464046 147 - 169600520 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=44161.000000
s hg38.chr15_KI270850v1_alt    130051 119 +    430880 GATTTCTAGCCCGAGGGTTTAAAATGGAGTTAAAGTAAGTGTCTTTAAACTGAACTCAAAGAATGCAAAAGCGGCAAGTTCAG-----ACAAGGCAAGAACAGGACCTTTAGTCCATTTTAAGC
s gorGor5.CYUI01015946v1        53170 119 -    378907 GATTTCTAGCCCGAGGGTTTAAAATGGAGTTAAAGTAAGTGTCTTTAAACTGAACTCAAAGAATGCAAAAGCGGCAAGTTCAG-----AAAAGGCAAGAACAGGACCTTTAGTCCATTTTAAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25644654 120 - 121039945 GATTTCTAGCCCGAGGGTCTAAATTGGACTTAAACTA----TCTTTAAACTGAGCTCAAAGAATGCAAAAGTGGCAAGTTCAGAAAATAAAAGGCCAGAACAAGACTTTAAGTCCATTTTAAAC
i nomLeu3.chr6              C 0 I 468
s manLeu1.NW_012107797v1      1608097 103 +   1678425 -AATTCCAGTCCGAGGGTTTAAAATTGACTTAAAGTAACTGTCTTTAAACTGAACTCAAAGAAGGCAAAAGTGGCAAGTTCAGAAAATAAAAGTCAAGAACAGG--------------------
i manLeu1.NW_012107797v1    C 0 C 0
e aotNan1.NW_018511953v1      3094567 1850 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886   0 -    584178 C
e canFam3.chr9                5823122   2 -  61074082 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e colAng1.NW_012116021v1       331541  16 +   4111199 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e cerAty1.NW_011999477v1      9923716 451 +  10730278 I
e macNem1.NW_012011533v1      4004572 475 +   4820037 I
e macFas5.chr7              106535100 1383 - 171882078 I
e rheMac8.chr7              113464046 147 - 169600520 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=551562.000000
s hg38.chr15_KI270850v1_alt    130170 377 +    430880 CATAAATATTACACAAAATATGCCTCTAACTGAAACTGAGAGGTATAAAAACATATTTCACTCTTCGTAAAGAACTTTGTGAGGAAATATAACTCTGTGATTGTATAGACAC-TTTCCTCATGACACTTTGACAGTCACAAACAGTAGATTGCGCTGCAGTTTGTAAACATTTTACGTTGCATAAACTGCTCCTTGATTTTCAAATGT---AGTATAATACTGTCTACTAAAACTCCTTTTTGTTTCAACTAAGTACTCTCACATATATTAGTTTATAATAATGTTTGTTATTA-TT-TTTAAAGTGTTCTCCATTCAAGGAAAAGAAGTAAATTCCTATGTCAGA-----------TGG--TTGAAGACTAGCTATTAG-CCAGAGAGGTCTAGAT
s gorGor5.CYUI01015946v1        53289 377 -    378907 CATAAATATTACACAAAATATGCCTCTAACTGAAACTGAGAGGTATAAAAACATATTTCACTCTACGTAAAGAACTTTGTGAGGAAATATAACTCTGTGATTGTATAGACAC-TTTCCTCATGACACTTTGACAGTCACAAACAGTAGATTGCGCTGCAGTTTGTAAACATTTTAAGTTGCATAAACTGCTCCTTGATTTTCAAATGT---AGTATAATGCTGTCTACTAAAACTCCTTTTTGTTTCAACTAGGTACTCTCACATATATTAGTTTATAATAATGTTTGTTATTA-TT-TTTAAAGTGTTCTCCATTCAAGGAAAAGAAGTAAATTCCAGTGTCAGA-----------TGG--TTGAAGACTAGCTATTAG-CCAGAGAGGTCTAGAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25645242 386 - 121039945 CATAAATATGGCACAAAATATGCCTCTAACTGAAACCAAGAGGTATAAAAACATATTTCACTCTTTGTGAAGAACTTTGTGAGGAAACATAACTCTGTGATTGTATAGACACTTTTCCTCATAATACTTTGACATTCACAAACAGTAGATTGCACTGCGGCTTGTAAACATTTTAAGTTGCATAAACT--TCCTTGATTTTCATATGT---AGTATAATACTGTCTACTAAAACTCCTTTTTGTTTCAACTAAGTACTGTCACATATATTGGTTTATAATAATGGTTGTTATTA-TT-TTTAAAGTGTTTTCCATTCAAAGAAAAGAAGTAAATTCCTATGTCAGAGTAA-CCAATGTGG--CTGACGAATAGGTATTAG-CCAGAGAGGTCTAGAT
i nomLeu3.chr6              I 468 C 0
s macNem1.NW_012011533v1      4005047 392 +   4820037 CATAAATATGGCACAAAATATGCCTCTAACTGAAACCGAGAGGTATAAAAACATATTTCACTCTTCGTAAAGAACTTTGTGAGGAAATATAACTCTGTGATTGTATAGATACTTTTACTCACAATACTGTGACATTCATCAACAGTAGATTGCATTGCAGTTTGTAAATATTTTAAGTTGCACAAACTTTACCTTGATTTTCAAATGC---AGTATAATACTGTCCACTAAAACTCCTTTTTGTTTCAACTAAGTACTGTCACATATATTAGTTTATAAAAATGGTTGTTATTA-TT-TTTAAAGTGTTTTTCCTTCAAGGAAAAGAAGTAAATTCCTATGGCAGATTAACCCAATGTGGGCTTGAAGAATAGGTATTAGCCCAGAGAGGTCTAGAT
i macNem1.NW_012011533v1    I 475 I 25
s cerAty1.NW_011999477v1      9924167 387 +  10730278 CATAAATATGGCACAAAATATGCCTCTAACTGAAACCGAGAGGTATAAAAACATATTTCACCCTTCGTAAAGAACTTTGTGAGGAAATATAACTCTGTGATTGTATAGATACTTTTAGTCATCATACTTTGACATTCACAAACAGTAGATTGCATTGCAGTTTGTAAATATTTTAAGTTGCATAAACTTCTCCTTGATTTTCAAATGT---AGTATAACACTGTCCACTAAAACTGCTTTTTGTTTCAACCAA-TACTCTCACATGTATTAGTTTATTAAAATGGTTGTTATTA-TT-TTTAAAGTGTTTTCCATTCAAGGAAAAGAAGTAAATTCCTATGGCAGATTAA-CCAATGTGG--CTGAAAAATAGGTATTAG-CCAGAGAGGTCTAGAT
i cerAty1.NW_011999477v1    I 451 C 0
s manLeu1.NW_012107797v1      1608200 339 +   1678425 --------------------------------------------------ACATAGTTCACCCTTCGTAAAGAAGTTTGTGAGGAAATATAACTCTGTGATTGTATAGACATGTTTCCTGATAATACATTGACATTCACAAACAGTAGATTGCACTGCAGTTTGTAAACATTTTAAGTTGCATAAACTTCTCTTTGACTTTCAAAGAT---AGTATAATACTGTCTATTAAAACTTCTTTTTGTTTTAACTAAGTACTCTCACACATATTAGTTTATAATAATGTTTGTTATTATTT-TTTAAAGTGTTTTCCACTAAAGGAAAAGAAGTAAATTCCTATGTCAGAGTAA-CCAAGGTGG--TTGAAGAATAAGTATTAG-CCAGAGAGGTCTAGAT
i manLeu1.NW_012107797v1    C 0 C 0
s aotNan1.NW_018511953v1      3096417 383 +   3745603 CATAAATCTTGCACAAAATATGCCTCTAACTGAAACCGAAAGGTATAAAAACATATTTCACTGTTTGTAAAGAACTTGATGAGGAAATAAAA--CTGTAATTGTACAGACACTTTTGCTGATAATACTTTGACATTCACAAACAGTAGATGGCACTGCAGTCTATGAACACTTTAAGTTGCATAAACT------TGAATTTCAAATATAGAAGTACAATTCTGTCTACTGAAACTCCTTTTTGTTTCAGCCAAGTACTCTCACATATATTAGTTTATAATAATGTTTGTGATTA-TTGTTTAAAGT-CCTTCTATTCAAGAAAAAGAAGGCAATTCCTATGTCAGAGTAA-TCAAGGTGG--TTGAAGAATAGGTATTAG-CCAGAGAAGTCTGGAT
i aotNan1.NW_018511953v1    I 1850 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886   0 -    584178 C
e canFam3.chr9                5823122   2 -  61074082 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e colAng1.NW_012116021v1       331541  16 +   4111199 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macFas5.chr7              106535100 1383 - 171882078 I
e rheMac8.chr7              113464046 147 - 169600520 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=19002.000000
s hg38.chr15_KI270850v1_alt    130547 19 +    430880 GGTAAAATCC-ATCTTCTAG
s gorGor5.CYUI01015946v1        53666 19 -    378907 GGTAAAATCC-ATCTTCTAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25645628 20 - 121039945 GGTAAAAACCAATCTTCTAG
i nomLeu3.chr6              C 0 C 0
s cerAty1.NW_011999477v1      9924554 19 +  10730278 GGTAAAATCA-GTCTTCTAG
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012107797v1      1608539 19 +   1678425 GGTAAAATCA-ATCTTCAAG
i manLeu1.NW_012107797v1    C 0 C 0
s aotNan1.NW_018511953v1      3096800 19 +   3745603 GGTCAAATCA-ATCTTCTAG
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e colAng1.NW_012116021v1       331541 16 +   4111199 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macNem1.NW_012011533v1      4005439 25 +   4820037 I
e macFas5.chr7              106535100 1383 - 171882078 I
e rheMac8.chr7              113464046 147 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=162782.000000
s hg38.chr15_KI270850v1_alt    130566 111 +    430880 CCTCAAATAAGCTCCATGAACACA-GAGGAATGCCAGGTGTCACACAGCTTTCCTTCACT--CGAATTCATTCTTGACTAGAGCCTGTATATGCCTGTTCCAGGGGCATTTAAA
s gorGor5.CYUI01015946v1        53685 111 -    378907 CCTCAAATAAGCTCCATGAACATA-GAGGAATGCCAGGTGTCACACAGCTTTCCTTCACT--CAAATTCATTCTTGACTAGAGCCTGTATATGCCTGTTCCAGGGACATTTAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25645648 109 - 121039945 CCTCAAAGAAGCTCCATGAACATA-GAGGAAAGCCAAGTGTCACACAGCTTTCCTTCACT--CGAATTCCTTCTTGACTAGAGCCTG--TATGCCTCTTCCAGGGACATTTAAG
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011533v1      4005464 107 +   4820037 CCCCAAAGAAGC-CCATGAACGTAGGAGGAATGCCAGGTG-CACACAGCTTT-CTTCACTAAAGAATTCATTCTTGACT-GAGCCTG--TAATCCTGTT-CAGGGATATTTAAA
i macNem1.NW_012011533v1    I 25 C 0
s cerAty1.NW_011999477v1      9924573 109 +  10730278 CCTCAAAGAAGCTCCGTGAACATA-GAGGAATGCCAGGTGTCACACAGCTTTCCTTCACT--CGAATTCATTCTTGACTAGAGCCTG--TATGCCTGTTCCAGGGACATTTAAA
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012107797v1      1608558 109 +   1678425 CCTCAAAGACGCTCCGTGAACAGA-GAGGAATGCCAGGTGTCACACAGCTTTCCTTCACT--CTAATTCATCCTTGACTAGAGTCTG--TATACCTGTTCCAGGGACATTTAAA
i manLeu1.NW_012107797v1    C 0 C 0
s aotNan1.NW_018511953v1      3096819 109 +   3745603 CCTCAAAGAAGCTCCATGAACAGA-GAGGGATGCCAGGTGTCACATGGCTTTCCTGCACT--CTAATTCATTCTTGACTAGAACCTG--TATGTCTGTTCCAGGGACATTTAAA
i aotNan1.NW_018511953v1    C 0 I 865
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886   0 -    584178 C
e canFam3.chr9                5823122   2 -  61074082 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e colAng1.NW_012116021v1       331541  16 +   4111199 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macFas5.chr7              106535100 1383 - 171882078 I
e rheMac8.chr7              113464046 147 - 169600520 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=52492.000000
s hg38.chr15_KI270850v1_alt    130677 48 +    430880 CTCTTAAAGGATTTCTTCTGATCTTTACTAAATACATTAAGGAG-AACG
s gorGor5.CYUI01015946v1        53796 48 -    378907 CTCTTAAAGGATTTCTTCTGATCTTTACTAAATACATTAAGGAG-AATG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25645757 48 - 121039945 CTCTTAAAGGATTTCTTACAATCTTTACTAAATACTTTAAGAAG-AATG
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011533v1      4005571 49 +   4820037 CTTCTGAAAGGTTTCTTATGATCTTCACTAAATACACTAAGAAGTAATG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9924682 48 +  10730278 CTCTGAAAGGGTTTCTTATGATCTTCACTAAATACACTAAGAAG-AATG
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012107797v1      1608667 48 +   1678425 CTCTCAAAGGATTTCTTATGATCTTTACTAAATACATTAAGAAG-AATG
i manLeu1.NW_012107797v1    C 0 C 0
e aotNan1.NW_018511953v1      3096928 865 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e colAng1.NW_012116021v1       331541 16 +   4111199 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macFas5.chr7              106535100 1383 - 171882078 I
e rheMac8.chr7              113464046 147 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=71349.000000
s hg38.chr15_KI270850v1_alt    130725 46 +    430880 CCAACCAGTGCCCTTTTGTGTACTGGGACATGTAGTCATGTGATTA
s gorGor5.CYUI01015946v1        53844 46 -    378907 CCAACCAGTGCCCTTTTGTGTACTGGGACATGTAGTCATGTGATTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25645805 46 - 121039945 CTAACTAGTGCCCTTTTGTGTACTGGGACATATACTCATGTGATTA
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011533v1      4005620 46 +   4820037 CCAAGCAGTGCCCTTTTGTGTACTGGGACATGTAGTCATGTGATTA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9924730 46 +  10730278 CCAAGCAGTGCCCTTTTGTGTACTGGGACATGTAGTCATGTGATTA
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012107797v1      1608715 46 +   1678425 CCAACCAATGCCCTTTTGTGTACTGGGACATGTAGTCATGTGATTA
i manLeu1.NW_012107797v1    C 0 C 0
s aotNan1.NW_018511953v1      3097793 45 +   3745603 CCAACCAGTGCCCTTTTGTGTACTAGAGACTTGGATCATGTAATA-
i aotNan1.NW_018511953v1    I 865 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e colAng1.NW_012116021v1       331541 16 +   4111199 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macFas5.chr7              106535100 1383 - 171882078 I
e rheMac8.chr7              113464046 147 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=221881.000000
s hg38.chr15_KI270850v1_alt    130771 111 +    430880 AAACAG-GGAACATGAACTCTGACTTTAAAATGTATTGT-AGATATAAATGCTCT-CAGCTAGAAAAGG--TTTTCCACATCCACAGTC-ATGATGGG-AGCCTTTCATTCCTCAGAA
s gorGor5.CYUI01015946v1        53890 111 -    378907 AAACAG-GGAACACGAACTCTGACTTTAAAATGTATTGT-AGATATAAATGCTCT-CAGCTAGAAAAGG--TTTTCCACATCCACAGTC-ATGATGGG-AGCCTTTCATTCCTCAGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25645851 112 - 121039945 AAACAG-GTAACATGAACTCTGACTTTACAATGTATTGT-AGATATAAATGCTCT-AAGCTAGAAAAGG--TTTTCCACATCCACAGTCAATGATGGG-AGCCTTTCATTCCTCAGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113464193 112 - 169600520 AAACAG-GTAACGTGAACTCTGACTTTAAAATGTATTGT-AGATATAAATGCTCT-AAGCTAGAAAAGG--TTTTCTGCATCCACATTCAATGATGGG-AGCCTTTCATTCCTCAGAA
i rheMac8.chr7              I 147 C 0
s macNem1.NW_012011533v1      4005666 114 +   4820037 AAACAG-GTAACATGAACTCTGATTTAAAAATGTA-TGT-AGATATAAATGCTCTAAAGCTAGAAAAGGGTTTTTCCACATCCACAGTCAATGATGGGAAGCCTTTCATTCTTCAG-A
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9924776 112 +  10730278 AAACAG-GTAACATGAACTCTGATTTTAAAATGTATTGT-GGATATAAATGCTCT-AAGCTAGAAAAGG--TTTTCCACATCCACAGTCAATGATGGG-ATCCTTTCATTCCTCAGGA
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012107797v1      1608761 108 +   1678425 AAACAG-GTAACATGAACTC----TTTTAAATGTATTAT-AGATACAAATGCTCT-AAGCTAGGAAAGG--TTTTCCACATCCACAATCAATGATGGG-AGCCTTTCATTCCTCAGAA
i manLeu1.NW_012107797v1    C 0 C 0
s aotNan1.NW_018511953v1      3097838 112 +   3745603 AAACAGCGTAACATGAACTCTGACTTTAC-ATGTATTATAAGCTATAAATGCTCT-AAGCTAGGAGAGG---TTTCCACATCCACAGTCAAAGATGGG-AGCCTTTTAGTCCTCAGAA
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886   0 -    584178 C
e canFam3.chr9                5823122   2 -  61074082 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e colAng1.NW_012116021v1       331541  16 +   4111199 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=173109.000000
s hg38.chr15_KI270850v1_alt    130882 79 +    430880 ATAATCCCTTTTCAGGTCATCA-AAAAAGAGTACAACTGCCACAGCTCATGAGG--CAGTATCTT-CATGAG-CCCAGAGC--ACA
s gorGor5.CYUI01015946v1        54001 79 -    378907 ATAATCCCTTTTCAGGTCGTCA-AAAAAGAGGACAACTGCCACAGCTCATGAGG--CAGTATCTT-CATGAT-CCCAGAGC--ACA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25645963 79 - 121039945 ATAATCCCTTTTTAGGTCATCG-AGAAAAGGTACAACTGCTGCAGCTCATGATG--CAATATCTT-CAAGAG-CCCAGAGC--ACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113464305 79 - 169600520 AGAATCCCTTTATAAGTCATTG-AGTAAGAGTCCAACTGCTGCAGCTCATGCTG--CAATATCTT-CATGAG-CCCAGAGC--ACA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      4005780 86 +   4820037 ATAATCCCTTTTTAGGTCATTGAAGTAAGAGTCCAAGTGCTGCAGCTCATGCTGCACAATATCTTCCATGAGCCCCAGAGCCAACG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9924888 79 +  10730278 AGAATCCCTTTTTAGGTCATTG-AGAAAGAGTCCAACTGCTGCAGCTCATGCTG--CGATATCTT-CATGAG-CCCAGAGC--ACA
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012107797v1      1608869 79 +   1678425 ATAATCCCTTTTTAGGTCATCA-AGAAAGAGTACAACTGCTGCAGCTCATGGTG--CAATATCTT-CATGAG-CCCAGAGC--ACA
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       331557 79 +   4111199 ATAATCCCTTTTTAGGTCATCA-GAAAGGAGTACAACTGCCCCAGCTCATGATG--TAATATCTT-CATATG-CCCAGAGC--ACA
i colAng1.NW_012116021v1    I 16 C 0
s aotNan1.NW_018511953v1      3097950 74 +   3745603 ATCATTC--TTTTAGGTCATAA-AAAGATA----CGCTGCCACAGCTCATGATG--CAGTATCTTTCATAAG-CCCAGAGC--ACA
i aotNan1.NW_018511953v1    C 0 I 846
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=161547.000000
s hg38.chr15_KI270850v1_alt    130961 76 +    430880 TACAAATCCTAAGGGAACTACCGTAGTACAGCGCTCATTCTTGGCACCAGAACAAATGAAACATATTCTATCCTGC
s gorGor5.CYUI01015946v1        54080 76 -    378907 TACAAATCCTAAGGGAACTACCATAGTACAGTGCTCATTCTTGGCACCGGAACAAATGAAACATATTCTATCCTGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25646042 74 - 121039945 TACAAATCCTAAGGGAACTACCATAGTACAGCGCTCATTCTTGGCACCAGAACACATGAAAC--ACTCTATCCTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113464384 76 - 169600520 TACAAATCCTAAGGGAACTACCATAGTACCGCGCTCATTCCTGGCACCAGAACAAATGAATCACACTCTATCCTGC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      4005866 75 +   4820037 TACAAATCCTAAGGGAACTACCATAGT-CCGCGCTCATTCCTGGCACCAAGAACAATGAAACACACTCTATCCTGC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9924967 76 +  10730278 TACAAATCCTCAGGGAACTACCATAGTACCGCGCTCATTCCTGGCACCAGAACAAATGAATCACACTCTATCCTGT
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012107797v1      1608948 76 +   1678425 TACAAATCCTGAGGGAACTACCATAGTACAGCGCTCATTCTTGGCACCGGAACAAATGAAACGCACTCTATCCTGC
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       331636 76 +   4111199 TACAAATCCCAAGGGAAGTACCATAGTAACGCACTCATTCTTGGCTCCGAAACAAATGAAACGTATTCTATCCTGC
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=174618.000000
s hg38.chr15_KI270850v1_alt    131037 104 +    430880 ACACA-CCTGCCAAAGCAGGCCACTTTCCT-CTTCTGGGAGATTTAAAAACCT-CCCCAAAATGTTATTACTCCCATCCCCAATACACAGAAAAAGGGGGAAAGGCT
s gorGor5.CYUI01015946v1        54156 104 -    378907 ACACA-CCTGCCAGAGCAGGCTACTTTCCT-CTTCTGGGAGATTTAAAAACCT-CCCCAAAATGTTATTACTCCCATCCCCAATACACAGAAAAAGGGGGAAAGGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25646116 104 - 121039945 ACACA-CCTGCCAGAGCAGGCCACTTTCCT-CTTCCGTGAGATTTAAAAAGCT-CCCCAAAATGTTATTATTCCCATCCCCAATACACAGAAAATAGGAGAAAGGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113464460 104 - 169600520 GCACA-CCTGCCAGAGCAGGCCACTTTCCT-CTTCTGTGAGATTTAAAAAGCT-CCCCAAAATGTTATCACTCCCATCCCCAATACACAGAAAATAGGGGAAAGACT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      4005941 106 +   4820037 ACACACCCTGCCAGAGCAGGCCACTTTCCTCCTTCTGTGAGATTTAAAAAGCT-CCCCAAAATATTATCACTCCCATCCCCAATACACAGAAAATAGGCGAAAGGCT
i macNem1.NW_012011533v1    C 0 I 271
s manLeu1.NW_012107797v1      1609024 105 +   1678425 ACACA-CCTGCCAGAGCAGGCCACTTTCCT-CTTCTGTGAGATTTAAAAAGCTCCCCCAAAATGTTATTACTCCCATCATCAATACACAGAAAATGGGGGAAAGGCT
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       331712 103 +   4111199 ACATA-TCTGCCAGAGCAGGCCACTTTCCT-CTTTTGGGAGATTTAAAAAGCT-CCCCAAAATGTTATTACACCCATCCCCAATACACAGAAAA-AGGGGAAAGGCT
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886   0 -    584178 C
e canFam3.chr9                5823122   2 -  61074082 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e cerAty1.NW_011999477v1      9925043   0 +  10730278 C
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=20431.000000
s hg38.chr15_KI270850v1_alt    131141 22 +    430880 GTTTCCAGTGCTCCACCTTTAA
s gorGor5.CYUI01015946v1        54260 21 -    378907 GTTT-CAGTGCTCCACCTTTAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25646220 22 - 121039945 GTTTCCAGTTCTCAGCCTTTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113464564 22 - 169600520 GTTTCCAGTTCTCAGCCTTTAA
i rheMac8.chr7              C 0 C 0
s manLeu1.NW_012107797v1      1609129 22 +   1678425 GTTTCCAGTTCTCGGCCTTTAA
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       331815 22 +   4111199 CTCTCCAGTGCTTCATCTTTAA
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e cerAty1.NW_011999477v1      9925043  0 +  10730278 C
e macNem1.NW_012011533v1      4006047 271 +   4820037 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=377994.000000
s hg38.chr15_KI270850v1_alt    131163 234 +    430880 ACAACTGTAAATGTCAGTACTCACAGTGGCATATTACAAAGTAATAGAC--CGCGCACTTGAGGGCAAACCACATATTGAGCTAATGAAGAGCTCACTGTGATTAGGATTCGATCAAACATAACAGCAGAACATAAGGAAATTTTATCTGAATTCCGTAATGAATATACAGGCTGTACTAACATTAAAAAAGCATGGCAGCCTATCCCAAACCAGCAAGAACAGTTGTGTGCATAC
s gorGor5.CYUI01015946v1        54281 233 -    378907 ACAACTGTAAATGTCAGTACTCACAGTGGCATATTACAAAGTAATAGAC--CGCGCACTTGAGGGCAAACCACATGTTGAGCTAATGAAGAGCTCACTGTGATTAGGATTCGATCAAACATAACAGCAGAACATAAGGAAATTTTATCTGAATTCTGTAATGAATATACATGCTGTACTAACATTAAAAAAGCATGGCAGCCTATCCCAAACCAGCAA-AACAGTTGTGTGCATAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25646242 236 - 121039945 ACAACTCTAAAGGTCAGTACTCACAGTGGCATATTACAAAGTAATAAACGATGCGCACTTGAGGGCAAACCACATATTCAGCTAATGAAGAGCTCACTGTGGTTAGGATTCAATCAAACATAATAGCAGAATATAAGCAAATTTTATCTGAATTCTGTAATGAATATACATGCTGCAATAACATTAAAAAAGCATGGCAGCCTGTTCCAAACTAGTAAGAATAGTTTTGTGCAAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113464586 236 - 169600520 ACAACTCTAAATGTCAGTACTCACAGTGGCATATTACAAAGTAAGAAACAGTGCGCACTTGAGGGCAAACCACATATTGAGCTAATGAAGAGCTCACTGTGATTAGGATTCGATCAAACATAATAACAGAACATAAGCAGATTTTATCTGAATTATTTAATGAATATACATGCTGCAATAACATTTAAAAAGCAGGGCAGCCTATTCCAAACCAGTAAGAATAGTTTTGTGCAAAT
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9925043 236 +  10730278 ACAACTCTAAATGTCGGTACTCACAATGGCATATTACAAAGTAAGAAACAGTGCGCACTTGAGGACAAACCACATATTGAGCTAATGAAGAGCTCACTGTGATTAGGAATCGATCAAACATAATAGCAGAACATAAGCAAATTTTATCTGAATTCTGTAATGAATATACATGCTGCAATAACATTTAAAAAGCAGGGCAGCCTATTCCAAACCAGTAAAAATAGTTTTGTGCAAAT
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012107797v1      1609151 228 +   1678425 ACAACTCTAAATGTCAGTACTCACAGTGGCATATTACAAAGTAATAAACAGTGCACACTTGAGGGCAAACCACATATTGAGCTAATGAAGGGCTCGCTGTGACTAAGATTAGGTTAAAC--AATAGCAGAACATAAGCAAAT------TAAATTCTGTAATGAATATACGTGCTGCAATAACATTAAAAAAGCATGGCAGGCTATTCCAAACCAGCAACAATAGTTTTGTGCAAAC
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       331837 234 +   4111199 ACAACTGTAAATGTCAGTACTCACAGTGGCACATTACAAACTAATAAACA--GCGCACTTGAGGGCAAACCACATATTGAGCTAATGAAGAGCTCACTGTGATTAGGAGTCGATCAAGCATAATAGCAGAACATAGGCAAATTTTATCTGAATTCTGTAATGAATATACATGCTGCAAAAACATTAAAAAAGCGTGGCAGCCTATTCCAAACCACCAAGAACAGTTTTGTGCATAT
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886   0 -    584178 C
e canFam3.chr9                5823122   2 -  61074082 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macNem1.NW_012011533v1      4006047 271 +   4820037 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=99080.000000
s hg38.chr15_KI270850v1_alt    131397 46 +    430880 AGTGGGTCTTTGTGTGTTTG-AACTCCCACCACATAAGGGCAAACTC
s gorGor5.CYUI01015946v1        54514 46 -    378907 AGTGGGTCTTTGTGTGTTTG-AACTCCCACCACATAAGGGCAAACTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25646478 46 - 121039945 AGTGGGTCTTCGTGTGTTTG-AATTCTCACCACCTAAAGGCAAACTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113464822 46 - 169600520 AGTGGGTCTTTGTGTGTTTG-AACTCCCACCATGTAAGGGCAAACTC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      4006318 46 +   4820037 AGTGGGTCTTTGTGTGTTTGAAACTCCCACC-TGTAAGGGCAAACTC
i macNem1.NW_012011533v1    I 271 I 39
s cerAty1.NW_011999477v1      9925279 46 +  10730278 AGTGGATCTTTGTGTGTTTG-AACTCCCACCATGTAAGGGCAAACTC
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012107797v1      1609379 46 +   1678425 AGTGGGTCTTTGTGTGTTTG-ACCTCCCACCATGTAAGGGCAAACTC
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       332071 45 +   4111199 GGTGGGTCTTCGTGTGTTTG-AACTCCCACCACAT-AGGGCAAACTC
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=40496.000000
s hg38.chr15_KI270850v1_alt    131443 34 +    430880 GATATGCATGCTAACGTCCTATAATTATCAAA-TT
s gorGor5.CYUI01015946v1        54560 34 -    378907 GATATGCATGCTAACG-CTTATAATTATCAAATTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25646524 34 - 121039945 GATATGCACGCTAATGACCTACAATTATCAAA-TT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113464868 34 - 169600520 GATATGCGAGCTAATGACCTACAATTATCAAT-TA
i rheMac8.chr7              C 0 I 3
s cerAty1.NW_011999477v1      9925325 34 +  10730278 GATATGTGAGCTAATGACCTACAATTATCAAT-TA
i cerAty1.NW_011999477v1    C 0 I 3
s manLeu1.NW_012107797v1      1609425 34 +   1678425 GATATGCATGCTAATGACCTACAATTATGAAG-TT
i manLeu1.NW_012107797v1    C 0 I 5
s colAng1.NW_012116021v1       332116 33 +   4111199 GATATGC-AGCTAATGACCTACAGTTATCACA-TA
i colAng1.NW_012116021v1    C 0 I 3
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macNem1.NW_012011533v1      4006364 39 +   4820037 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=126886.000000
s hg38.chr15_KI270850v1_alt    131477 64 +    430880 AA----AAAAATGCTAAAAGATGCCAGAGTGAACATGAGAGAA--------AGACCCACTCTCATTTAACTTttta
s gorGor5.CYUI01015946v1        54594 64 -    378907 TA----AAAAATGCTAAAAGATGCCAGAGTGAACATGAGAGAA--------AGACCCACTCTCATTTAACCTTTTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25646558 68 - 121039945 AAAAACAAAAATGCTAAAGGATGCCAGAGTGAACATCAGGGAA--------AGACCAACTCTCCCTTAACTTTTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113464905 64 - 169600520 ----ACAAAAATGCTAAAGGATGCCAGAGTGAACATCAGGGAA--------AGATCCACTCTCCCTTAACTTTTCA
i rheMac8.chr7              I 3 C 0
s macNem1.NW_012011533v1      4006403 64 +   4820037 ----AAAAAAATGCTAACGGATGCCAGAGTGAACATCAGGGAA--------AGACCCACTCTCCCTTAACTTTTTA
i macNem1.NW_012011533v1    I 39 I 9
s cerAty1.NW_011999477v1      9925362 64 +  10730278 ----ACAAAAATGCTAACGGATGCCAGAGTGAACATCAGGGAA--------AGACCCACTCTCCCTTAACTTTTTA
i cerAty1.NW_011999477v1    I 3 C 0
s manLeu1.NW_012107797v1      1609464 72 +   1678425 ----AGAAAAATGCTAAAGGATGCCAGAGTGAACATCAGTGAAAGCCACAGAGACCCACTCTCCTTTAACTTTTTA
i manLeu1.NW_012107797v1    I 5 C 0
s colAng1.NW_012116021v1       332152 63 +   4111199 ----AGAAAAATGCTGAAGGATGCCAGGGTGAACATGAGGGAA--------AGACCCACTCTTCTGTAACTTTTT-
i colAng1.NW_012116021v1    I 3 C 0
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=3229.000000
s hg38.chr15_KI270850v1_alt    131541 37 +    430880 caaataaatttaaattataaattagaaacacaaataa
s gorGor5.CYUI01015946v1        54658 34 -    378907 CAAATAAATTTAAACTATAAAT---AAAAACAAATAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25646626 22 - 121039945 CAAATAAATGTAAATGGTAAAT---------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113464969  7 - 169600520 ------------------------------GAAAGAA
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9925426  7 +  10730278 ------------------------------TAAATAA
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012107797v1      1609536 37 +   1678425 CAAATAAACTTAAACTATAAATTAGAAACACAAATAA
i manLeu1.NW_012107797v1    C 0 I 1
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e colAng1.NW_012116021v1       332215  0 +   4111199 C
e chlSab2.chr29               3121565 1386 +  24206276 I
e macNem1.NW_012011533v1      4006467  9 +   4820037 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=-2274.000000
s hg38.chr15_KI270850v1_alt    131578 65 +    430880 atttaaactataaattagaaacacaaataaatttaaattataaattagaaacacaaataaattta
s gorGor5.CYUI01015946v1        54692 63 -    378907 ATTTAAACAATAAATTAGAA--ACAAATAAATTTAAACTATAAATTAGAAACACAAATAAATTTA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              113464976  4 - 169600520 ------------------------------ATTA-------------------------------
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9925433 30 +  10730278 ------------------------------ATTTAAACTGTAAATTAGAAACATAAATAA-----
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012116021v1       332215 13 +   4111199 ----------------------------------------------------ACAAATAAATTTA
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e manLeu1.NW_012107797v1      1609573  1 +   1678425 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macNem1.NW_012011533v1      4006467  9 +   4820037 I
e macFas5.chr7              106535100 1383 - 171882078 I
e nomLeu3.chr6               25646648  0 - 121039945 C
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=16429.000000
s hg38.chr15_KI270850v1_alt    131643 26 +    430880 aactataaattAGAAACA-CAAATAAA
s gorGor5.CYUI01015946v1        54755 26 -    378907 AACTATAAATTAGAAACA-CAAATAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25646648 16 - 121039945 ----------TAGAAACA-CAAATAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113464980 26 - 169600520 AACTGTAAATTAGAAACA-TAAATAAA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      4006476 27 +   4820037 AACTGTAAATTAGAAACACTAAATAAA
i macNem1.NW_012011533v1    I 9 C 0
s cerAty1.NW_011999477v1      9925463  1 +  10730278 --------------------------A
i cerAty1.NW_011999477v1    C 0 C 0
s colAng1.NW_012116021v1       332228 24 +   4111199 AAC--TAAGTTAGAAACA-CAAATAAA
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e manLeu1.NW_012107797v1      1609573  1 +   1678425 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=118982.000000
s hg38.chr15_KI270850v1_alt    131669 56 +    430880 CATAAGTGGCTCTAACATT-CAAATGAAGTAAATGAATTGTGTAGGATATTAACCCC
s gorGor5.CYUI01015946v1        54781 56 -    378907 CATAAGTGGCTCTAACATT-CAAATGAAGTAAATGAATTGTGTGGGAGATTAACCCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25646664 56 - 121039945 TGTGAGTGGCTCTAACATT-CAAATGGAGTAAAAGAATTGTGTAGGAGATTAACCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113465006 56 - 169600520 CATGAGGGGTTCTAACATT-CCAATGAAGTAGATGAATTGTGTAAGGGATTAACCCC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      4006503 57 +   4820037 CATGGTTGGCTCTAACATTCCCAATGAAGTAGATGAATTGTGTAGGGGATTAACCCC
i macNem1.NW_012011533v1    C 0 I 17
s cerAty1.NW_011999477v1      9925464 56 +  10730278 CATGAGTGGCTCTAACATT-CCAATGAAGTAGATGAATTGTGTAGGGGATTAACCCC
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012107797v1      1609574 56 +   1678425 CATGAGTGTCTCTAACATT-CAAATGAAGTAAATGAATGGTATAGGGAATTAACCCC
i manLeu1.NW_012107797v1    I 1 C 0
s colAng1.NW_012116021v1       332252 56 +   4111199 CATGAGTGGCTCTAACATT-CAAATGAAGTAAATGAATTATGTAGGAGATTAACCCC
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=1921.000000
s hg38.chr15_KI270850v1_alt    131725 21 +    430880 TTAAATGttttgttttttttt------
s gorGor5.CYUI01015946v1        54837 13 -    378907 TTAA--------CTTTTTTTT------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25646720 16 - 121039945 ATCA-----CTTTTTGTTGTT------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113465062 16 - 169600520 ATAA-----CTTTTTGTTGTT------
i rheMac8.chr7              C 0 I 1
s cerAty1.NW_011999477v1      9925520 15 +  10730278 ATAA------TTTTGGTTGTT------
i cerAty1.NW_011999477v1    C 0 I 1
s manLeu1.NW_012107797v1      1609630 16 +   1678425 ATAA-----CTTTGTTTCCTT------
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       332308 21 +   4111199 -TAA-----ACTTTTTTTGTTTGTTTG
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macNem1.NW_012011533v1      4006560 17 +   4820037 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=38199.000000
s hg38.chr15_KI270850v1_alt    131746 19 +    430880 tttttCAATTTCTTGACCC
s gorGor5.CYUI01015946v1        54850 19 -    378907 TTTTTTAATTTCTTGACCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25646736 19 - 121039945 GTTTTAAATTTCTTGACCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113465079 19 - 169600520 ATTTTAAATTTCTTGACCA
i rheMac8.chr7              I 1 C 0
s macNem1.NW_012011533v1      4006577 19 +   4820037 TTTTTAAATTTCTTGACTA
i macNem1.NW_012011533v1    I 17 C 0
s cerAty1.NW_011999477v1      9925536 19 +  10730278 TTTTTAAATTTCTTGACTA
i cerAty1.NW_011999477v1    I 1 C 0
s manLeu1.NW_012107797v1      1609646 19 +   1678425 TTGTAAAATTTCTTGACCA
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       332329 19 +   4111199 TTTTTAAATTTCTTGACCA
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886  0 -    584178 C
e canFam3.chr9                5823122  2 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=13028.000000
s hg38.chr15_KI270850v1_alt    131765 4 +    430880 GCTC
s gorGor5.CYUI01015946v1        54869 4 -    378907 GCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25646755 4 - 121039945 GCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113465098 4 - 169600520 GCTC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      4006596 4 +   4820037 GCTT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9925555 4 +  10730278 GCTC
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012107797v1      1609665 4 +   1678425 GCTC
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       332348 4 +   4111199 GCTC
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr9                5823124 4 -  61074082 GCTC
i canFam3.chr9              I 2 C 0
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             400886 0 -    584178 C
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=99767.000000
s hg38.chr15_KI270850v1_alt    131769 40 +    430880 TTAGATGATGGTGATGTTTAGCTCCCTGTTCTCCGCAGCC
s gorGor5.CYUI01015946v1        54873 40 -    378907 TTAGATGATGGTGATGTTTATCTCCCTGTTCTCGGCAGCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25646759 40 - 121039945 TTAGATGATGATGATGTTTATCTCCCTGTTCTTGGCTGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113465102 40 - 169600520 TCAGATGATGATGATGTTTATCTCTCTGTTCTCGGCTGCC
i rheMac8.chr7              C 0 I 2
s macNem1.NW_012011533v1      4006600 40 +   4820037 CTAGATGATGATGATGTTTATCTCTCTGTTCTTGGCTGCC
i macNem1.NW_012011533v1    C 0 I 2
s cerAty1.NW_011999477v1      9925559 40 +  10730278 TCAGATGATGATGATGTTTATCTTCCTGTTCTTGGCTGCC
i cerAty1.NW_011999477v1    C 0 I 2
s manLeu1.NW_012107797v1      1609669 40 +   1678425 TTTGATGATGGTGATGTTTATCTCCTTCTTCTCAGCAGCC
i manLeu1.NW_012107797v1    C 0 I 72
s colAng1.NW_012116021v1       332352 37 +   4111199 TTAGATGA---TGATGTTTATCTCCCTGATCTCAGCACCA
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr9                5823128 40 -  61074082 TTAGATCACCAGGATCTTCACCTCGTCATTGTCATCAGCC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             400886 40 -    584178 TTAGATGATGATAATCTTCACTTGTTCGTTCTCATCAGCC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=45159.000000
s hg38.chr15_KI270850v1_alt    131809 19 +    430880 CG--AAAAGAATGGCATGCAG
s gorGor5.CYUI01015946v1        54913 19 -    378907 CG--AAAAGAATGGCATGCAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25646799 21 - 121039945 CGGTAAAAGAATGGCATGCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113465144 19 - 169600520 --GTAAAAGAATGGCATGCAG
i rheMac8.chr7              I 2 I 11
s macNem1.NW_012011533v1      4006642 19 +   4820037 --GTAAAAGAATGGCACGCAG
i macNem1.NW_012011533v1    I 2 I 11
s cerAty1.NW_011999477v1      9925601 19 +  10730278 --GTAAAAGAATGGCACGCAG
i cerAty1.NW_011999477v1    I 2 I 11
s colAng1.NW_012116021v1       332389 19 +   4111199 --TGAGAAGAATGGCATGCAG
i colAng1.NW_012116021v1    C 0 I 11
s canFam3.chr9                5823168 21 -  61074082 CGGTAGAAGAAGGGGACGCAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             400926 21 -    584178 CGGTAAAAGAATGGGATGCAG
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e manLeu1.NW_012107797v1      1609709 72 +   1678425 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=-820.000000
s hg38.chr15_KI270850v1_alt    131828 1 +    430880 -C
s gorGor5.CYUI01015946v1        54932 1 -    378907 -C
i gorGor5.CYUI01015946v1    C 0 C 0
s dasNov3.JH564958             400947 1 -    584178 G-
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr9                5823189 0 -  61074082 C
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e colAng1.NW_012116021v1       332408 11 +   4111199 I
e manLeu1.NW_012107797v1      1609709 72 +   1678425 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e cerAty1.NW_011999477v1      9925620 11 +  10730278 I
e macNem1.NW_012011533v1      4006661 11 +   4820037 I
e macFas5.chr7              106535100 1383 - 171882078 I
e rheMac8.chr7              113465163 11 - 169600520 I
e nomLeu3.chr6               25646820 0 - 121039945 C
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=-5595.000000
s hg38.chr15_KI270850v1_alt    131829 48 +    430880 CTCTTCTGCTCCTCCTGCCGCCTCTCCTGTACCAACAGCTTCTCCACT
s gorGor5.CYUI01015946v1        54933 48 -    378907 CTCTCCTGCTCCTCCTGCCGCCTCTCCTGTACCAACAGCTTCTCCACC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25646820 11 - 121039945 -------------------------------------GGTTTGCTAGG
i nomLeu3.chr6              C 0 C 0
s canFam3.chr9                5823189 11 -  61074082 -------------------------------------GGATTCTTGCT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             400948 11 -    584178 ---------------------------------GGCTGTTGCCC----
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e colAng1.NW_012116021v1       332408 11 +   4111199 I
e manLeu1.NW_012107797v1      1609709 72 +   1678425 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e cerAty1.NW_011999477v1      9925620 11 +  10730278 I
e macNem1.NW_012011533v1      4006661 11 +   4820037 I
e macFas5.chr7              106535100 1383 - 171882078 I
e rheMac8.chr7              113465163 11 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=164488.000000
s hg38.chr15_KI270850v1_alt    131877 76 +    430880 CAAGCCTGGGTGCTCCTGG-GGAGTCCTGCATTAGAGGAAGCAGCTGCTGGATCTGCTGTGCAGTGGGGTTGTCAT-G
s gorGor5.CYUI01015946v1        54981 75 -    378907 CAAGCCTGGGTGCTCCTGG-GGAGTCCTGCATTAGAGGAAGCAGCTGCTGGATCTGCTGTGCAGTGGGGTTGTCAT--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25646831 74 - 121039945 CAAGCCTGGGTGCTCCTGG-GT-GTCCTGCATTACAGGAAGCAGCTGCACGATCTGCTGTGCAGTGGGGTTGTCAT--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113465174 74 - 169600520 CAAGCCTGGGTGCTCCTGG-GT-GTCCTGCGTTACAGGAAGCAGCTGCAGGATCTTCTGTGCAGTGGGGTTGTCAC--
i rheMac8.chr7              I 11 C 0
s macNem1.NW_012011533v1      4006672 74 +   4820037 CAAGCCTGGGTGCTCCTGG-GT-GTCCTGCGTTACAGGAAGCAGCTGCAGGATCTTCTGTGCAGTGGGGTTGTCAC--
i macNem1.NW_012011533v1    I 11 C 0
s cerAty1.NW_011999477v1      9925631 74 +  10730278 CAAGCCTGGGTGCTCCTGG-GT-GTCCTGCATTACAGGAAGCAGCTGCAGGATCTTCTGTGCAGTGGGATTGTCAC--
i cerAty1.NW_011999477v1    I 11 C 0
s colAng1.NW_012116021v1       332419 76 +   4111199 CAAGCCTCGGTGCTCCTGGAGA-GTCCTGCGTTAGAGGAAGCAGCTGCACGATACGCTGTGCAGTGGGGTTGTCGTG-
i colAng1.NW_012116021v1    I 11 C 0
s canFam3.chr9                5823200 74 -  61074082 TAAACCTAGGTATGGCTGG-GG-ATTCTGCATCTCCTGCAGAAGCTGCATGATTTGCTGTGCAGTGGGGTTCTCAG--
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958             400959 73 -    584178 -AGGCCTGGGTGATTCTGG-GG-GTTTTGAATCTCACGTAGCAGTTGCATAATTTGCTGGGCAGTGGGATTCTCAG--
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e manLeu1.NW_012107797v1      1609709 72 +   1678425 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=124374.000000
s hg38.chr15_KI270850v1_alt    131953 78 +    430880 GGGGAGAACCCTCCCT------GTCCTGTCCCGGTGCAGCCTCCATGCTATCAGTG------AGGCTCAGCTCACTAAGATCT-------TCAGAGA
s gorGor5.CYUI01015946v1        55056 78 -    378907 GGGGAGAACCCTCCCT------GTCCTCTCCTGGTGCCGCCTCCACGCTATCAGTG------AGGCTCACCTCACTAAGATCT-------TCAGAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25646905 78 - 121039945 GGGGAGAACCCTCCCT------GGCCGCTCCTGGTGCAGGCTCCACGCTGTTGTCC------AGGCTCACCTCATAAAAATCT-------TTGGAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113465248 63 - 169600520 GGGGAGAACCCTCCCT------GGCCTGTCCCGGTGCAGGCTTCATGCTGTGG---------------------TGAAAATCT-------TCGGAGA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      4006746 63 +   4820037 GGGGAGAACCCTCCCT------GGCCTGTCCCGGTGCAGGCTCCACGCTGTCC---------------------TGAAAATCT-------TCAGAGA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9925705 63 +  10730278 AGGGAGAACCCTCCCT------GGCCTGTCCCGGTGCAGGCTCCACGCTGTCC---------------------TGAAAATCT-------TCAGAGA
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012107797v1      1609781 78 +   1678425 GGGGAGAACCGTCCCT------GGCCTCTCCTTGCGCAGGCTCCACGCTGTCGGTG------AGGCTCACCTCACAAAGATCT-------TTGGAGA
i manLeu1.NW_012107797v1    I 72 C 0
s colAng1.NW_012116021v1       332495 77 +   4111199 -GGGAGAACCCTCTCT------GGCCTCTCCTGGTGCAGGCTCCACACTGTCAGTG------AGGCTCACCTCACGAAGATCT-------TCAGACA
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr9                5823275 93 -  61074082 ----GGCACTGTGGCCTGGTAGGGCCTCTCCCTGAGGAGGTGCCACATTATCATTGTCAGCCAGGCTCACCTCTCGAAGATCTTTGTGGGTCAGGGA
i canFam3.chr9              I 1 I 4
s dasNov3.JH564958             401032 57 -    584178 ---------------------------CTCCTTTTACAGGTTCCCCATCATCTGCC------AAATTCACCTCGTGAAGGTCT-------GAGGAGA
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3098024 846 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=278995.000000
s hg38.chr15_KI270850v1_alt    132031 86 +    430880 GAGGGAG-GGGGTGGGAATCTGGGCACAGTGCGAG--CCTCCCCTGC-TCCTGCCTGCCCACCCCGCCT-----GAGGGCTCTACTCACCACCCT
s gorGor5.CYUI01015946v1        55134 87 -    378907 GACGGAGAGGGGTGGGAATCTGAGCACAGTGCAAG--CCTCCCCTGC-TCCTGCCTGCCCACCCCGCCT-----GAGGGCTCTACTCACCACCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25646983 83 - 121039945 GAAGGAG----GCGGGGGTCTGAGCACAATGCAAA--CCTCTCCTGC-TCCTGCCTGCCCACCCCACCC-----GAGGGCTCTACTCACCATCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113465311 83 - 169600520 GAGGGAG----GCGGGGCTCTGAGTACACTGCCAG--CCTCCCCTGC-TCCAGCCTGCCCACCCCGCCT-----GAGGGCTCTACTCACCACCCT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011533v1      4006809 83 +   4820037 GAGGGAG----GCGGGGCTCTGAGTACACTGCGAG--CCTCCCCTGC-TCCGGCCTGCCCACCCCACCT-----GAGGGCTCTACTCACCACCCT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9925768 83 +  10730278 GAGGGAG----GCGGGGCTCTGAGTACACTGCGAG--CCTCCCCTGC-TCCTGCCTACCCACCCCGCCT-----GAGGACTCTACTCACCACCCC
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012107797v1      1609859 83 +   1678425 GAGGGAG----GCGGGGATCTGAGCACAGTGGGAG--CCTCCCCTGC-CCCTGCCTGCCCATCCTGCCT-----GAGGACTCAACTCACCACCAT
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       332572 83 +   4111199 GAGAAAG----GAGGGGATCTGAGCTCAGTGCGAG--CCGCCCCTGC-TCCTGCCTGCCCACCCCGCCT-----GAGCGCTCTACTCACCACCCT
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1      3098870 87 +   3745603 GAGAGAG-GGAGTGGGGATCTGAGCACAGTGCCAG--CCTCCCCTGCTTCCTGCCTGCCCACCCCGCCT-----GAGGGCTCTACTCACCACCCT
i aotNan1.NW_018511953v1    I 846 I 1023
s canFam3.chr9                5823372 74 -  61074082 GAAAGAA----ACAGGGCTCTGAGTGCTGTGCGAG--CTCTCCCCGC----------CCCACCCACCCT-----GAGGGCTCTACTCACCACCCT
i canFam3.chr9              I 4 I 1
s dasNov3.JH564958             401089 87 -    584178 GAGAAAG----GCAGGGCTCTGAGCACCCTTCTGTGCTCTCCCCTGC-TTCTACCTGCCTTTCCACCTTTCTGAGAGGGCTCTACTCACCCT---
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=4398.000000
s hg38.chr15_KI270850v1_alt    132117 3 +    430880 -GCT
s gorGor5.CYUI01015946v1        55221 3 -    378907 -GCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25647066 3 - 121039945 -GCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113465394 3 - 169600520 -GCT
i rheMac8.chr7              C 0 I 1932
s macNem1.NW_012011533v1      4006892 3 +   4820037 -GCT
i macNem1.NW_012011533v1    C 0 I 2577
s cerAty1.NW_011999477v1      9925851 3 +  10730278 -GCT
i cerAty1.NW_011999477v1    C 0 I 2012
s manLeu1.NW_012107797v1      1609942 3 +   1678425 -GCT
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       332655 3 +   4111199 -GCT
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr9                5823447 2 -  61074082 -GC-
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958             401176 3 -    584178 GGC-
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3098957 1023 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e macFas5.chr7              106535100 1383 - 171882078 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=-633.000000
s hg38.chr15_KI270850v1_alt    132120 3 +    430880 TGT
s gorGor5.CYUI01015946v1        55224 2 -    378907 T-T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25647069 3 - 121039945 CAC
i nomLeu3.chr6              C 0 C 0
s manLeu1.NW_012107797v1      1609945 3 +   1678425 TGT
i manLeu1.NW_012107797v1    C 0 I 1952
s colAng1.NW_012116021v1       332658 3 +   4111199 TGT
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr9                5823449 3 -  61074082 CAT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             401179 3 -    584178 CAT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3098957 1023 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e cerAty1.NW_011999477v1      9925854 2012 +  10730278 I
e macNem1.NW_012011533v1      4006895 2577 +   4820037 I
e macFas5.chr7              106535100 1383 - 171882078 I
e rheMac8.chr7              113465397 1932 - 169600520 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=11286.000000
s hg38.chr15_KI270850v1_alt    132123 18 +    430880 CCGCACATCCAAGCTCCT
s gorGor5.CYUI01015946v1        55226 17 -    378907 CCGCACACCCAAGCTCC-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25647072 17 - 121039945 CGGCAGCCCCAAGTTCC-
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012116021v1       332661 17 +   4111199 CAGCACACCCAAGCTCC-
i colAng1.NW_012116021v1    C 0 T 70090
s canFam3.chr9                5823452 17 -  61074082 TGGCAGCACCAAGCTCT-
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958             401182 17 -    584178 TGCCAGCTCCAAGCTCC-
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3098957 1023 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e manLeu1.NW_012107797v1      1609948 1952 +   1678425 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e cerAty1.NW_011999477v1      9925854 2012 +  10730278 I
e macNem1.NW_012011533v1      4006895 2577 +   4820037 I
e macFas5.chr7              106535100 1383 - 171882078 I
e rheMac8.chr7              113465397 1932 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=7955.000000
s hg38.chr15_KI270850v1_alt    132141 13 +    430880 TGTGGGACTGGGG
s gorGor5.CYUI01015946v1        55243 13 -    378907 TGTGGGATCGGGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25647089 13 - 121039945 TGGGGGGCTGGGG
i nomLeu3.chr6              C 0 C 0
s canFam3.chr9                5823470  9 -  61074082 ----GGGCTGGGG
i canFam3.chr9              I 1 I 1663
s dasNov3.JH564958             401199 13 -    584178 TGAGGGGCTGGGG
i dasNov3.JH564958          C 0 I 1726
e aotNan1.NW_018511953v1      3098957 1023 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e colAng1.NW_012116021v1       332678 70090 +   4111199 T
e manLeu1.NW_012107797v1      1609948 1952 +   1678425 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e cerAty1.NW_011999477v1      9925854 2012 +  10730278 I
e macNem1.NW_012011533v1      4006895 2577 +   4820037 I
e macFas5.chr7              106535100 1383 - 171882078 I
e rheMac8.chr7              113465397 1932 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=329.000000
s hg38.chr15_KI270850v1_alt    132154 2 +    430880 CT
s gorGor5.CYUI01015946v1        55256 2 -    378907 CT
i gorGor5.CYUI01015946v1    C 0 I 13
s nomLeu3.chr6               25647102 2 - 121039945 CC
i nomLeu3.chr6              C 0 I 994
e aotNan1.NW_018511953v1      3098957 1023 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             401212 1726 -    584178 I
e canFam3.chr9                5823479 1663 -  61074082 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23130544 142 -  99763055 I
e colAng1.NW_012116021v1       332678 70090 +   4111199 T
e manLeu1.NW_012107797v1      1609948 1952 +   1678425 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e cerAty1.NW_011999477v1      9925854 2012 +  10730278 I
e macNem1.NW_012011533v1      4006895 2577 +   4820037 I
e macFas5.chr7              106535100 1383 - 171882078 I
e rheMac8.chr7              113465397 1932 - 169600520 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=430.000000
s hg38.chr15_KI270850v1_alt    132156 1 +    430880 C
s panPan2.chr15              23130686 1 -  99763055 C
i panPan2.chr15             I 142 C 0
s gorGor5.CYUI01015946v1        55271 1 -    378907 A
i gorGor5.CYUI01015946v1    I 13 C 0
s nomLeu3.chr6               25648098 1 - 121039945 C
i nomLeu3.chr6              I 994 C 0
s manLeu1.NW_012107797v1      1611900 1 +   1678425 C
i manLeu1.NW_012107797v1    I 1952 C 0
s colAng1.NW_012116021v1       262588 1 +   4111199 C
i colAng1.NW_012116021v1    T 70090 C 0
e aotNan1.NW_018511953v1      3098957 1023 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             401212 1726 -    584178 I
e canFam3.chr9                5823479 1663 -  61074082 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e chlSab2.chr29               3121565 1386 +  24206276 I
e cerAty1.NW_011999477v1      9925854 2012 +  10730278 I
e macNem1.NW_012011533v1      4006895 2577 +   4820037 I
e macFas5.chr7              106535100 1383 - 171882078 I
e rheMac8.chr7              113465397 1932 - 169600520 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=44323.000000
s hg38.chr15_KI270850v1_alt    132157 14 +    430880 CAGGTACTGGTCTG
s panPan2.chr15              23130687 14 -  99763055 CAGGTACTAGTCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        55272 14 -    378907 CAGGTACTGGTCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25648099 14 - 121039945 CAGGTACTAGTCTC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106536483 14 - 171882078 CAGGTACTGGTCTC
i macFas5.chr7              I 1383 C 0
s chlSab2.chr29               3122951 14 +  24206276 CAGGTACTGGTCTC
i chlSab2.chr29             I 1386 C 0
s manLeu1.NW_012107797v1      1611901 14 +   1678425 CAGGTGATGGTCTG
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       262589 14 +   4111199 CAGGTACTGATCTG
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr9                5825142 14 -  61074082 CATGTACTGGTCCC
i canFam3.chr9              I 1663 C 0
s dasNov3.JH564958             402938 14 -    584178 CAGGTACTGGTCCC
i dasNov3.JH564958          I 1726 C 0
e aotNan1.NW_018511953v1      3098957 1023 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e cerAty1.NW_011999477v1      9925854 2012 +  10730278 I
e macNem1.NW_012011533v1      4006895 2577 +   4820037 I
e rheMac8.chr7              113465397 1932 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=519096.000000
s hg38.chr15_KI270850v1_alt    132171 134 +    430880 GCTGCTGCTGCAGACTCGGAGCCTCTTGGCTCTTCAGCTCCACCTGCCGGAAGACCCTGGGCATGAGGACATGTGGTGGCTGGCTTCCAGATTCCTGGCCCATTAATAGGGTAGCGAG----------------------GGCACTGTGGGGCTCT
s panPan2.chr15              23130701 134 -  99763055 GCTGCTGCTGCAGACTCTGAGACTCTTGGCTCTTCATCTCCACCTGCAGGAAGACCCTGGGCATGAGGGCACATGGTGGCTGGCTTCCAGGTTCTGGGCCCATTAATAGGGTAGCTAG----------------------GGCACTGTGGGGCTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        55286 134 -    378907 GCTGCTGCTGCAGACTTGGAGCCTCTTGGCTCTTCAGCTCCACCTGCCGGAAGACCCTGGGCATGAGGGCATGTGGTGGCTGGCTTCCAGATTCCTGGCCCATTAATAGGGTAGCGAG----------------------GGCACTTTGGGGCTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25648113 134 - 121039945 ACTGCTGCTGCAGACTCTGAGACTCTTGGCTCTTCAGCTCCACCTGCAGGAAGACCCTGGGCATGAGGGCACATGGTGGCTGGCTTCCAGATTCTGGGACCATTAATAGGGTAGCGAG----------------------GGCACTGTGGGGCTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113467329 131 - 169600520 GCTGCTGCTGCAGACTCTGAGACTCTTGGCTCTTCAGCTGTATCTGCAGGAAGACCCTGGGCATGAGGGCATG---TGGTTGGCTTCCAGATTCTGGGCCCATTAATAGGGTAGCGAG----------------------GGCACGGTGGGGCTCT
i rheMac8.chr7              I 1932 C 0
s macFas5.chr7              106536497 134 - 171882078 CCTGCTGCTGCAGACTCTGAGCCTCTTGGCTCTTCAGCTCCACCTGCAGGATGATCCTGGGCATGAGGGCATTTACTAGCTGGCTTCCGGATTCCTGGCCCATTAATAGGGTAGCAAG----------------------GGCACTGTGGTGCTCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9927866 131 +  10730278 GCTGCTGCTGCAGACTCTGAGACTCTTGGCTCTTCAGCTGTATGTGCAGGAAGACCCTGGGCATGAGGGCATG---TGGTTGGCTTCCAGATTCTGGGCCCATTAATAGGGTAGCGAG----------------------GGCACGGTGGGGCTCT
i cerAty1.NW_011999477v1    I 2012 C 0
s chlSab2.chr29               3122965 133 +  24206276 CCTGCTGCTGCAGACTCTGAGCC-CCTGGCTCTTCAGCTCCACCTGCAGGAAGATCCTGGGCATGAGGGCATTTACTAGCTGGCTTCCGGATTCCTGGCCCATTAATAGGGTAGCAAG----------------------GGCACTGTGGTGCTCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1611915 132 +   1678425 GCTGCTGCTGCAGACTCTGAGCCTCTTGGCTCTTCAGCTCCACCTGCAGGAAGACCCTGGGCATGAGGGCATGTGGTGGCTGGCTTCCAGATTCTGGGCCCATTAATAGGGTAGCAAG----------------------GACCC--TGGGGCTCT
i manLeu1.NW_012107797v1    C 0 C 0
s colAng1.NW_012116021v1       262603 109 +   4111199 GCTGCCACTGCAGAGTCTGAGCCTCTTGGCTCTTCAACTCCACCTGAAGCCAG-----------------------TGGCTGGCTTCTAGATTCTGGGCCCATAAGTAGGGTAGCGAG----------------------GGCACTGTGGgg--ct
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr9                5825156 103 -  61074082 GCTGCTGCTGTAGATTCTGAGCCTCCTGGCTCTTCAGCTCCACCTGTGGGAAGACCCAGGGACTAAG-----------GCTGGCACCCG-----------TGCTGAGAGGAAAGCGGG----------------------AG---------GCTCT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             402952 154 -    584178 GCTGCTCCTGCAGACCCTGAGCCTCTTTGCTCTTTAGCTCCACCTGCGGGAAGACCCTGGAAGTGAGGGTGAGCCGTGGACTGCTTCCAGACTCTGCGCCC--CGAGAGGGAAGGGGGATACAGAAGTCTGCTCAGTGCAGAAATGGTAAGGCTCT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3098957 1023 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e macNem1.NW_012011533v1      4006895 2577 +   4820037 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=159241.000000
s hg38.chr15_KI270850v1_alt    132305 31 +    430880 GTGGCCTGCCCAGGCCCCTGGC-CCCTTGCTC
s panPan2.chr15              23130835 31 -  99763055 GTCACCTGCCCAGGACCCTGGT-CCCTTGCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        55420 30 -    378907 GTGGCCTGCCCAGG-CCGTGGC-CCCTTGCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25648247 31 - 121039945 GTCACCTGCCCAGGACCCTGGT-CCCTTGCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113467460 31 - 169600520 GTCACCTGCCCGGGACCCTGGC-CCCTTGCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106536631 31 - 171882078 GTGGCCTACCCAGGCCCCTGGT-CCCTTGCTC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9927997 31 +  10730278 GTCACCTGCCTGGGACCCTGGC-CCCTTGCTC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3123098 31 +  24206276 GTGGCCTGCCCAGGCCCCTGGT-CCCTTGCTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012107797v1      1612047 31 +   1678425 ATTGCCTGCCCAGGCCCCTGGC-CCCTTGCTC
i manLeu1.NW_012107797v1    C 0 N 0
s colAng1.NW_012116021v1       262712 31 +   4111199 gctgcctgcccaggctcctggc-cccttgctc
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1      3099980 31 +   3745603 GTGGCCTGCCCAGGCGCCTGGA-CCCTGGCTC
i aotNan1.NW_018511953v1    I 1023 C 0
s canFam3.chr9                5825259 32 -  61074082 GCGGCCCGCCCAGGCCCCTGGCTTCCTCGCTC
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958             403106 31 -    584178 GCTGCCTGCCCAGGCCCTGGCC-TCCTTGCAT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e macNem1.NW_012011533v1      4006895 2577 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=820246.000000
s hg38.chr15_KI270850v1_alt    132336 200 +    430880 CAGGCCTAAGAGACTGTCTCCCTTGCCTAGAACCCCATGCCTCCTTCCCTAGCATCAAATCTCACG--TCCTTTTTCCCAGCATGTAAAC-TGTAGGCCACAGACTGGTGGAAAAGCAGGCGGAGCCAACCaccatctgctaagtgtg--ctacatgcctaat-g-tttccacgtat-tatctcatttaatcctcagcacctctgcaa
s panPan2.chr15              23130866 201 -  99763055 CAGGCCTAAGAGACTTCCTCCCTTGCCTAGAACCCCATACCTCCTTCCCCAGCCTCAAATCTCATG--TCCTTCTTCCCACCATTTAAAC-TGTAGGCCACAGACTGGTGGAAAAGCAGAGGGAGCCaaccaccatctgctaagtgtg--ctatatgcctaat-gctttccaggtat-tctctcattcaatcctcagcacctctgcaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        55450 200 -    378907 CAGCCCTAAGAGACTGCCTCCCTTGACTAGAACCCCATGCCTCCTTCCCCAGCCTCAAATCTCACG--TCCTTTTTCCCAGCATTTAAAC-TGTAGACCACAGACTGGTGGAAAAGCAGGGGGAGCCaaccaccatctgctaagtgtg--ctacatgcctaat-g-tttccacgtat-tatctcatttaatcctcagcacctctgcaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25648278 201 - 121039945 CAGGCCTAAGAGACTTCCTCCCTTGCCTAGAACCCCATACCTCCCTCCCCAGCCTCAAATCTCACG--TCCTTCTTCCCACCATTTAAAC-TGTAGGCCACAGACTGGTGGAAAAGCAGAAGGAGCCaaccaccatctgctaagtgtg--ctacatgcctaat-gctttccatgtat-tctctcattcaatcctcagcgcctctgcaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113467491 201 - 169600520 CAGGCCTAAGAGACTTCCCCCCTTGCCTAGAACCCCATGCCTCCTTCCCCAGCCTCAAATCTCCTG--TCCTTCTTCCCACCATTTAAAC-TGTAGGCCACAGACTGGTGGAAAAGCTGAGGGAGCCAAtcaccatctgctaagtgtg--ctccatgcctaatgc-tttccatgtgt-tctctcatttaatcccaggcacctccataa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106536662 199 - 171882078 CAGGCCTAAGAGACTGCCTCCTTTGCCTGGAACCCAGTGCATCCTTCCCCAGCCTCAAATCTCACA--TGCTTTTCCCTATCATTTAAAC-TGTAGGCCACAGACTGGTGGAAAA-CAGGGGGAGCCaaccaccatctgctaagtgta--ctacatgcctact-c-tttccgtgtgt-tatctcatttaatcctcagcacctctgcaa
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9928028 201 +  10730278 CAGGCCTAAGAGACTTCCCCCCTTGCCTAGAACCCCATGCCTCCTTCCCCAGCCTCAAATCTCCTG--TCCTTCTTCCCACCATTTAAAC-TGTAGGCCACAGACTGGTGGAAAAGCTGAGGGAGCCAATCACCATCTGCTAAgtgtg--cgacatgcctaatgc-tttccatgtgt-tctctcatttaatccccagcacctccataa
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3123129 196 +  24206276 CAGGCCTAAGAGACTGCCTCCCTTGCCTGGAACCCAATGCATCCTTCCCCAGCCTCAAATCTCACA--TGCTTTTCCCTATCATTTAAAC-TGTAGGCCACAGACTGGTGGAAA---ACGGGGAGCCAACCGCCATCtgccaagtgta--ctacatgcctaat-g-tttccacatat-tatctcatttaatcctcaga-cctctacaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1051937 199 +   1458659 caggcctaagTGACTGTCTCCCTTGCCTGGAACCCCATGCCTCTTTGCTCAGCCTCAAATCTCACA--TCCTCTTCTC-ACCATTTAAAC-TGTAGGCCACAGACTGGTGGCAAAGCAAAGGGAGCCAACCACCATCTGCTGAGtgtg--ctacatgcctaat-g-tttccacctat-tatctcatttaatcctcaaaccctctgcaa
i manLeu1.NW_012105520v1    N 0 C 0
s colAng1.NW_012116021v1       262743 191 +   4111199 caggcCTAAGTGACTGCATCCATTGTCT---------TGCCTTCTTCCCCAGCCTCAAATCTCACA--CACTTTTCCCTATTATTTAAAC-TGTAGGCCAGAGACTGGTGGAAAAGCAGGGGGAGCCaaccaccatctgctaagtgta--ctacatgcctaat-g-tttccacatat-tatctcatttaatcctcagcacctctgcaa
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1      3100011 200 +   3745603 -CAGCCTAAGAGACGGCCTCCCTTGCCTAGAACCCCATGCCTCCTTCCCCAGCCTCAAATCTCATG--TCCTTCCTTCCACCATTTAAAC-TGTAGGCCACAGACTGGTGGACGAGCAGAGGGAGCCAACCaccatctgccaagtgtg--ctacataactaat-gctttccacgcag-catctcatttaatcctcagcacccgcgcaa
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5825292 183 -  61074082 AGGACTTCAGTGACTGCCCCTATATCCAGGGACCCACACTTCCCTTACCCTTCCTCATGCCTCATG--ACCACCTTCT----ATTTTCAC-TTTA------------GTGGAAAAGCAAAGTGCGCCCATGGACATCTG---AGTGCGCCCTGAATGCCTCAC---ACtacaggcatgcttctcatttaattcttgacacctgggcag
i canFam3.chr9              I 1 I 297
s dasNov3.JH564958             403137 118 -    584178 -------AAGG-----------------------------------CCCTAGCCTCACACCTCACAACTCTTTTCTCTCATCCTTTTAACTTTTAGGCCAGAGACTGGTGGAAAAGCA----GAACCAAC-----------------A--CCATATGC------C-TTGACATGCAT----------TAAT--------CCTCTGTGA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e macNem1.NW_012011533v1      4006895 2577 +   4820037 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=415233.000000
s hg38.chr15_KI270850v1_alt    132536 98 +    430880 -ggaaaaggctaacttccttttgaag-ttaaagaaacagagacttagagatgcaaagtAGTTGAATTATGACCAGTGGAACCGAGGCCGGAATCCAGTTT-
s panPan2.chr15              23131067 99 -  99763055 -ggaaaaggctaacttccttttgaagtttacagaaacagagactaagagatgaaaagtagttgaatGGTGACCAGTGGAACCGAGGTCGGAATCCAGTTT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        55650 98 -    378907 -ggaaaaggctaacttccttttgaag-ttaaagaaacagagacttagagatgcaaagtagttgaattatgaccagtggaaccaaggccggaatccagttt-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25648479 98 - 121039945 -ggaaaatgctaacttccttttgaag-ttacagaaacagagactaagagaTGAACAGTAGTTGAATGGTGACCAGCGGAACCCAGGCCAGAATCCAGTTT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113467692 98 - 169600520 -gaaaaatgctaacttccttttgaag-ctaaagaaacagagacttagagatgaaaagtagttGAATGGTGACCAGTGGAACCGAGGCCAGAATCCAGTTT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106536861 98 - 171882078 -agaaaatgctaacttccttttgaag-ttaaagaaacagagacttagaaatgcaaagtAGTTGAATGATAACCAGTAGAACTGAGTCCAGAAACCAGTTT-
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9928229 98 +  10730278 -gaaaaatgctaacttccttttgaag-ctaaagaaacagagactcagagatgaaaagtAGTTGAATGGTGACCAGTGGAACCGAGGCCGGAATCCGGTTT-
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3123325 98 +  24206276 -ggaaaatgctaacttccatttgaag-ttaaagaaacagacacttaaaaatgcaaagtAGTTGAATGATAACCAGTAGAACCGAGTCCGGAAACCAGTTT-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1052136 98 +   1458659 -ggaaaaagctcacttcctttttaag-tgaaagaaaccaagacttagagatgcaaggtagttcaatggtgagcagtggagccgaggttggaattcaggtT-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       262934 98 +   4111199 -ggaaaatgctaacttcattttgaag-ttaaagaaaccgagacttggagatgcaaggtagttcaatggtgagcagtggagttgaggctggaattcagttt-
i colAng1.NW_012116021v1    C 0 I 5
s aotNan1.NW_018511953v1      3100211 96 +   3745603 -ggaaaatgctaactgcctttggaag-ttaaagaaacagagagt-agagatgcaaagtAGTCGAATGGTGACCAGCGGAATCAAGGCCGGAATCCAGTT--
i aotNan1.NW_018511953v1    C 0 C 0
s dasNov3.JH564958             403255 91 -    584178 GGAAAAATGCTAATCTCCTTGTCAAG-TTAAAGAAAATGATGCTTAGAGATG---------TGAATAGTGACCAGTGCAGCCAAAAGGAGAATTCAAGTTG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr9                5825475 297 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e macNem1.NW_012011533v1      4006895 2577 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=23575.000000
s hg38.chr15_KI270850v1_alt    132634 5 +    430880 GAATC
s panPan2.chr15              23131166 5 -  99763055 GAATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        55748 5 -    378907 gaatc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25648577 5 - 121039945 GAATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113467790 5 - 169600520 GAATC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106536959 5 - 171882078 GAATC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9928327 5 +  10730278 GAATC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3123423 5 +  24206276 GAGTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1052234 5 +   1458659 GAATC
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1      3100307 5 +   3745603 GGATC
i aotNan1.NW_018511953v1    C 0 C 0
s dasNov3.JH564958             403346 5 -    584178 GAATC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr9                5825475 297 -  61074082 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263032 5 +   4111199 I
e macNem1.NW_012011533v1      4006895 2577 +   4820037 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=254127.000000
s hg38.chr15_KI270850v1_alt    132639 119 +    430880 TAAGGAGTCttttttgtttttctgttttgttttgttttgagag--agtgtcactctgtgtcccaggctgcagtgcagtggtgcaatctcagctcactgcaaccttcatctcccgggctcaa
s panPan2.chr15              23131171 116 -  99763055 TAAGGAGGCTTttttgttt---tgttttgttttgttttgAGAC--agtgtcactctgtggcccaggctggagtgcagtggtgcaatctcagctcactgcaacctccacctcccgggctcaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        55753 110 -    378907 taaggagtc----tTGttt-----ttctgttttgttttgagac--agtgtcactctgtgtcccaggctggagtgcagtggtgcaatctcagctcactgcaaccttcacctcccgggctcaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25648582 106 - 121039945 TAAGGAGGC--------tt-----ttttgttttgttttgggac--agtgtcactctgtggcccaggctggagtgcagtggtgcaatctcagctcactgcaacctccaccacctgggctcaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113467795 108 - 169600520 GAAGGAGGCtt-------------ttttgttttgttttcagacagagtgtcaccatgtggcccatactggagtgcagtggtgcaatctcagctcactgcaacctccacctcccaggctcaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106536964 118 - 171882078 TAAGGAACtttttggtttt-tgtgttttgttttgttttgagac--agtgtcactctgtgtcccgggctggagtccagtggtgtgatctcagctcactgcaacctctacctcccaggctcaa
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9928332 106 +  10730278 TAAGGAGGCtt-------------ttttcttttgttttgagac--agtgtcaccatgtggcccatactggagtgcagtggtgcaatctcagctcactgtaacctccacctcccaggctcaa
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3123428 114 +  24206276 TAAGGAGTCtttttggttt-----ttgcgttttgttttgagac--agtgtcactctgtgtcccgggctggagtccagtgatgcgatctcagctcactgcaacctctacctcccaggctcaa
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3100312 116 +   3745603 TAAGGAGACTTTCGATTTG-----Atttgttttgttttgagacagagtgtcactctgtggcccaggctggagagtcgtggtgcaaactcagttcaccgcaacctccagctcccgggctcaa
i aotNan1.NW_018511953v1    C 0 C 0
s dasNov3.JH564958             403351  50 -    584178 CAAGGAGCC---------------TCCCATCCTAT-------C--ACTATCTCT-------------------------------------TTCCCTATAA----------TTGGGCTCAA
i dasNov3.JH564958          C 0 I 79
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr9                5825475 297 -  61074082 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263032   5 +   4111199 I
e manLeu1.NW_012105520v1      1052239   0 +   1458659 C
e macNem1.NW_012011533v1      4006895 2577 +   4820037 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=143312.000000
s hg38.chr15_KI270850v1_alt    132758 64 +    430880 gtgattctcgtgtctcagcctcctgagtagctgggattacaggcatgcaccaccaggcccggct
s panPan2.chr15              23131287 64 -  99763055 gcgattctcatgcctcagcctcctgagtagctgggattacaggcatgtgccaccatgcctggct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        55863 64 -    378907 gtgattctcgtgtctcagcctgccgagtagctgggattacaggcatgcaccaccaggcccggct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25648688 64 - 121039945 gcgattctcatgcctcagcctcctgagtagctgggattacaggcatgccccaccatgcctggct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113467903 60 - 169600520 ---gttctcatgcctca-tctcctgagtagctgggattacaggcatgtgccaccttgctgggct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106537082 64 - 171882078 atgattctcgtgtctcagcctcctgagtagctgggatgataggcatgcaccaccaagcctaggt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9928438 47 +  10730278 ---g--------------tctcctgagtagctgggattacaggcatgtgccaccttgccgggct
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3123542 64 +  24206276 atgattctcgtgtgtcagcctcctgagtagctgggatgacaggcatgcaccaccaggcctaggt
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3100428 64 +   3745603 gcgacgctcatgcctcagccccctgagtagctgggattactggtgtgcaccaccacacccagct
i aotNan1.NW_018511953v1    C 0 I 20
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             403401 79 -    584178 I
e canFam3.chr9                5825475 297 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263032  5 +   4111199 I
e manLeu1.NW_012105520v1      1052239  0 +   1458659 C
e macNem1.NW_012011533v1      4006895 2577 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=5123.000000
s hg38.chr15_KI270850v1_alt    132822 4 +    430880 aa-tt
s panPan2.chr15              23131351 5 -  99763055 aattt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        55927 4 -    378907 aa-tt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25648752 5 - 121039945 aattt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113467963 4 - 169600520 aa-tt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106537146 4 - 171882078 aa-tt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9928485 4 +  10730278 aa-tt
i cerAty1.NW_011999477v1    C 0 I 14
s chlSab2.chr29               3123606 4 +  24206276 aa-tt
i chlSab2.chr29             C 0 C 0
e aotNan1.NW_018511953v1      3100492 20 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             403401 79 -    584178 I
e canFam3.chr9                5825475 297 -  61074082 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263032 5 +   4111199 I
e manLeu1.NW_012105520v1      1052239 0 +   1458659 C
e macNem1.NW_012011533v1      4006895 2577 +   4820037 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=-10022.000000
s hg38.chr15_KI270850v1_alt    132826 14 +    430880 ---attattattatttt
s panPan2.chr15              23131356 13 -  99763055 ---tttattgttg-ttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        55931 14 -    378907 ---attttttttaaaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25648757 10 - 121039945 ---tttgttgttg----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113467967 10 - 169600520 --ttttgttgtt-----
i rheMac8.chr7              C 0 I 4
s macFas5.chr7              106537150  8 - 171882078 --att--ttttt-----
i macFas5.chr7              C 0 I 4
s chlSab2.chr29               3123610 10 +  24206276 atatt--ttttt-----
i chlSab2.chr29             C 0 I 2
e aotNan1.NW_018511953v1      3100492 20 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             403401 79 -    584178 I
e canFam3.chr9                5825475 297 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263032  5 +   4111199 I
e manLeu1.NW_012105520v1      1052239  0 +   1458659 C
e cerAty1.NW_011999477v1      9928489 14 +  10730278 I
e macNem1.NW_012011533v1      4006895 2577 +   4820037 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=1886.000000
s hg38.chr15_KI270850v1_alt    132840 2 +    430880 ta
s panPan2.chr15              23131369 2 -  99763055 ta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        55945 2 -    378907 aa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25648767 2 - 121039945 ta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113467981 2 - 169600520 ta
i rheMac8.chr7              I 4 C 0
s macFas5.chr7              106537162 2 - 171882078 aa
i macFas5.chr7              I 4 C 0
s cerAty1.NW_011999477v1      9928503 2 +  10730278 ta
i cerAty1.NW_011999477v1    I 14 C 0
s chlSab2.chr29               3123622 2 +  24206276 aa
i chlSab2.chr29             I 2 C 0
e aotNan1.NW_018511953v1      3100492 20 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             403401 79 -    584178 I
e canFam3.chr9                5825475 297 -  61074082 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263032 5 +   4111199 I
e manLeu1.NW_012105520v1      1052239 0 +   1458659 C
e macNem1.NW_012011533v1      4006895 2577 +   4820037 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=327102.000000
s hg38.chr15_KI270850v1_alt    132842 123 +    430880 attttagtagagatgagctttcaccatgttggccatgttggtctcaaactcctgacctcaagtgattgtcctgcctcagcctcccaaagtgctgggattgcaggcgtgagccaccacacccga
s panPan2.chr15              23131371 123 -  99763055 attttcgtagagatgaggttttgccatgttggccaggctggtctcaaactcttgacctcaagtgcttctcctgcctcagcctcccaaagtgctgggattacaggtgcgagccaatgtgccccg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        55947 123 -    378907 attttagtagagatgaggtttcgccatgttggccacgctgatctcaaactcctgacctcaagtgattgtcctgcctcagcctcccaaagtgctgggattacaggtgtgagccaccacacccAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25648769 123 - 121039945 attttagtagagatgaggtttcgccatgttggctaggctggtctcaaactcctgacctcaagtgattctcctgcctcagcctcccaaagtgctgggattacaggcacgagccaccgtgcccgg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113467983 123 - 169600520 attttaatagagatgaggtttcgccatgttggtcaggctggtctcaaactcctgacttcaagtgattctcctgcctcagcatcccaaagtgctgggattacaggcaggagccactgtgcccgg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106537164 123 - 171882078 attttagtagagatgaggttttgccatgtcagccaggctggtctcaaactcctgacctcaagtgattctcctgcctcagcctcccaaagtggtgggactacaggcgtcagccaccacacccga
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9928505 123 +  10730278 attttagtagagatgaggtttcgccatgttggtcaggctggtctcaaactcctgacttcaagtgattctcctgcctcagcatcccaaagtgctgggattacaggcaggagccactgtgcccgg
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3123624 122 +  24206276 attttagtagagatgaggttttgccatgtcagtcaggctggtctcaaactcctgacctcaagtgattctcctgcttcggcctcccaaagtggt-ggactacaggcgttagccaccacacccAA
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3100512 104 +   3745603 attttaatagagatgaggcttcaccatgttggccaggctgatctcaaac-------------------tcctgcctcagcctcccaaagtgctgggattacaggtgtgagccaccgcacccag
i aotNan1.NW_018511953v1    I 20 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             403401  79 -    584178 I
e canFam3.chr9                5825475 297 -  61074082 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263032   5 +   4111199 I
e manLeu1.NW_012105520v1      1052239   0 +   1458659 C
e macNem1.NW_012011533v1      4006895 2577 +   4820037 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=7497.000000
s hg38.chr15_KI270850v1_alt    132965 2 +    430880 cA
s panPan2.chr15              23131494 2 -  99763055 cA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        56070 2 -    378907 CA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25648892 2 - 121039945 cA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113468106 2 - 169600520 cA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106537287 2 - 171882078 cA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4009472 2 +   4820037 CA
i macNem1.NW_012011533v1    I 2577 C 0
s cerAty1.NW_011999477v1      9928628 2 +  10730278 cA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3123746 2 +  24206276 CA
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3100616 2 +   3745603 cG
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             403401 79 -    584178 I
e canFam3.chr9                5825475 297 -  61074082 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263032 5 +   4111199 I
e manLeu1.NW_012105520v1      1052239 0 +   1458659 C
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=85236.000000
s hg38.chr15_KI270850v1_alt    132967 17 +    430880 TAAGGAGCCTCTTATAC
s panPan2.chr15              23131496 17 -  99763055 TAAGGAGCCTCTTGTAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        56072 17 -    378907 TAAGGAGCCTCTTATAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25648894 17 - 121039945 TAAGGAGCCTGTTGTAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113468108 17 - 169600520 TAAGGACCCTCTTATAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106537289 17 - 171882078 TAAGGAGCCTCTTATAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4009474 17 +   4820037 TAAGGACCCTCTTATAC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9928630 17 +  10730278 TAAGGACCCTCTTATAC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3123748 17 +  24206276 TAAGGAGCCTCTTATAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1052239 17 +   1458659 TAAGGAGGCTCTTATAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       263037 17 +   4111199 taaggagcctctcatac
i colAng1.NW_012116021v1    I 5 C 0
s aotNan1.NW_018511953v1      3100618 17 +   3745603 TAAAGAGCCTCTCACAC
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             403401 79 -    584178 I
e canFam3.chr9                5825475 297 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=297909.000000
s hg38.chr15_KI270850v1_alt    132984 61 +    430880 CACTGTCTCTTCCTCTGTGATTGGGGGGCTCCATGCCTCTAGCTGGGATGATGATGATGTC
s panPan2.chr15              23131513 58 -  99763055 CACTGTCTCTTCCCCTGTGACTGGGGGAATCCATGCCTCTAGCTGG---GATGATGATGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        56089 58 -    378907 CACTGTCTCTTCCTCTGTGATTGGGGGGCTCCATGCCTCTAGCTGG---GATGATGATGTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25648911 58 - 121039945 CACTGTCTCTTCCCCTATGATTGGGGGGCTCCATGCCTCTAGCTGG---GATGATGATGTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113468125 58 - 169600520 CACTGTCTCCACCCCTATGATTGGGGGAATCCATTCCTCTAGCTGG---GAATATGATGTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106537306 57 - 171882078 CACTGTCTCTTCCCCTGTGACTGGGGG-CTCCATGGCTCTAGCTGG---GATGACGATATC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4009491 58 +   4820037 CACTGTCTCCACCCCTATGATTGGGGGAATCCATGCCTCTAGCTGG---GAAGATGATGTC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9928647 58 +  10730278 CACTGTCTCCACCCCTATGATTGGGCGAATCCATGCCTCTAGCTGG---GAAGATGATGTC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3123765 58 +  24206276 CACTGTCTCTTCCACTGTGACTGGGGGGCTCCATGCCTCTAGCTGG---GATGATGATATC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1052256 58 +   1458659 TACTGTCTCTTTCCTTATGACTGGGGAGCTCCACGCCTCTAGCTGG---GATGATGACGTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       263054 58 +   4111199 cactgTCTCTTTCCCTGTGATTGGGGAACTCCATGCCTCTAGCTGG---GATAATGATGTC
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1      3100635 58 +   3745603 CACTGTCTCTTGCCCTATGACTGGGGGGCTCCATGCCTCTAGCTGG---GATGATGATGTC
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5825772 55 -  61074082 caccatctcttgaccT---CGTTAGGGGCCTGAGCTCTCTAGCCAG---GACGAGGACCTT
i canFam3.chr9              I 297 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             403401 79 -    584178 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=807978.000000
s hg38.chr15_KI270850v1_alt    133045 163 +    430880 CAGACCTGGGAGGGCCCCAGGGCTACCCACCTCTAAAAGTCAGAGGGCAGGAAGCAAGAAACAG------TCATAGGACTGCCCCGGAGGGTGCTGGGGT-CACCTG----TCCCCAGGCTGCAGCTGCCTGTGGCCTGGC-ACCTCCCCTC--------CCCAGAGGCTGGT--GCCCGCCTCC
s panPan2.chr15              23131571 163 -  99763055 CAGACCTGGGAGGAGCCCAGGGCTACCCACCTCTAAAAGTCAGAGGGCAGGAAGCAAGAAACAG------TCATAGGGCTGCCCTGGAGGGTGCTGGGGT-CACCTG----CCCCCCAGCTGGAGCTGCCTTTGGCCTGGC-ACCTCCCTTC--------CCCAGAGGCTGAT--GCCCGCCTCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        56147 162 -    378907 CAGACCTGGGAGGACCCCAGGGCTACCCACCTCTAAAAGTCAGAGGGCCGGAAGC-AGAAACAG------TCATAGGACTGCCCTGGAGGGTGCTGGGGT-CACCTG----CCCTCAGGCTGCAGCTGCCTCTGGCCTGGC-ACCTCCCCTC--------CCCAGAGGCTGGT--GTCTGCCTCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25648969 163 - 121039945 CAGATCTGAGAGGAGCCCAGGGCTACCCACCTCTAAAAGTCAGAGGGCAGGAAGCAAGAAACAT------TCATAGGGCTGCCCTGGAGGGTGCTGGGGT-CACCTG----CCCCCCAGCTAGAGCTGCCTTTGGCCTGGC-ACCTCCCCTC--------CCCAGAGGCTGGT--GCCTGCCTCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113468183 163 - 169600520 CAGACCTGGGAGGAGCCCAGGGCTACCCACCTCTAAAAGTCAGAGGGCAGGAAGAAAGACACAG------TCATGGAGCTGCCCTGGAAGGTGCTGGGGT-CACCTG----CCCCACAGCTGGAGCTGCCTTTGGCCTGGC-ACCTCCCATC--------CCCAGAGGCTGGT--GCCTGCCTCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106537363 153 - 171882078 CAGACCTGGGGGGAGCCCAGGGCTCCCCACCTCTAAAAGTCAGAGGGAAAGATGCAAGAAACAG------TAATAGGACTGCC----------CCAGGGT-CACCTG----CTCGCAGGCTGCAGCTGCCTCTGGCCTGGC-ACCTCCCTTC--------CCCAGAGGCTGGT--GCCCGCCTCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4009549 163 +   4820037 CAGACCTGGGAGGAGCCCAGTGCTACCCACCTCTAAAATTCAGAGGGTAGGAAGAAAGAAACAG------TCATGGAGCTGCCCTGGAAGGTGCTGGGGT-CACCTG----CCCCACAGCTGGAGCTGCCTTTGGCCTGGC-ACCTCCCATC--------CCCAGAGGCTGGT--GCCCGCCTCC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9928705 163 +  10730278 CAGACCTGGGAGGAGCCCAGGGCTACCCACCTCTAAAATTCAGAGGGTAGGAAGAAAGAAACAG------TCATGGAGCTGCCCTGGAAGGTGCTGGGGT-CACCTG----CCCCTCAGCTGGAGCTGCCTTTGGCCTGGC-ACCTCCCCTC--------CCCAGAGGCTGGT--GCCTGCCTCC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3123823 153 +  24206276 CAGAACTGGGGGGAGCCCAGGGCTCCCCACCTCTAAAAGTCAGAGGGGAAGATGCAAGAAACAG------TAATAGGACTGCC----------CCAGGGT-CACCTG----CTCACAGGATGCAGCTGCCTCTGGCCTGGC-CCCTCCTTTC--------CCCAGAGGCTGGT--GCCCGCCTCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1052314 164 +   1458659 CAGACCTGGGAGGAATCCAGGGCTACCCACCTCTAAAATTCGCAGGGCAAGAAGCAAGAAACAG------TCACAGCACTGCCCTGGAGGCTGCTGGGGT-CACCTGT---CCCCCAGGCTGGAGCTGCCTCTGGCCTCAC-ACCTCCCTTC--------CCCAGAGACTGGT--GCCCGCCTCC
i manLeu1.NW_012105520v1    C 0 I 212
s colAng1.NW_012116021v1       263112 164 +   4111199 CAGACCTGGGAGGAGCCCAGGGCTACCCACCTCTAAAATTCAGAGGGCAGGAAGCAAGAAACAG------TCACAGCACTGCCCTGGAGGGTTCTGGGGT-CACTTGT---CCCACAGGCTGGAGCTGTCTCTGGCCTCGT-ACCTCCCTTC--------CCCAGAGGCTGGT--GCCTGCCTCC
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1      3100693 161 +   3745603 CAGGCCTGGGAGGAGCCCAGGGCTACCCACCTCTAAAACTCAGAGGGCAGGAAGCAAGAAACGG------TCACAGGACTGCCCTGGAGGGTG-TGGGGT-CACCTG----CCCCCAGAGTGGAGCTGCCTGTGGCCTTGC-ACCTCCC-TC--------CCAAGAGGCCGGT--GCCTGCCTCC
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5825827 163 -  61074082 CAG------------CCCAGGGATACCCACTCTGTAGAGTCAGACAGCTGGGAGTGACAAGGGGCCTGCACCACAGGCAGGATTGGAAGGACTCTGGAGT-CAGGTGTCCCCCCACAGGCTGGAGCTGCACCATCCTGGGCAACCTCCCACC--------CTCCGAG-CAGGTAGGTTTGTCCTC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             403480 149 -    584178 CAGGCTTGGCAGGACTCTAGGGTCACCTGTCCTCCCAGGCCAGAG---------------CTGG------CTCT----CTGACCTGGGC----CTAGAATCCAATTT----CATCCCTGTTGCAAacacacacacacacac-acacacacacacacacaGCCCAGAGGATTGT--GCCTGTCTCC
i dasNov3.JH564958          I 79 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=13326.000000
s hg38.chr15_KI270850v1_alt    133208 2 +    430880 CA
s panPan2.chr15              23131734 2 -  99763055 CA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        56309 2 -    378907 CA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25649132 2 - 121039945 CA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113468346 2 - 169600520 CA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106537516 2 - 171882078 CA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4009712 2 +   4820037 CA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9928868 2 +  10730278 CA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3123976 2 +  24206276 CA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       263276 2 +   4111199 CA
i colAng1.NW_012116021v1    C 0 I 159
s aotNan1.NW_018511953v1      3100854 2 +   3745603 CA
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5825990 2 -  61074082 CA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             403629 2 -    584178 TA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=124363.000000
s hg38.chr15_KI270850v1_alt    133210 35 +    430880 -CATCTTCTTGGATGGGTCGG-----AGGTTACAGTCTCTT
s panPan2.chr15              23131736 35 -  99763055 -GCCCTTCTTGGATGGGGTGG-----AGGTTACCATATCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        56311 35 -    378907 -CGTCTTCTTGGATGGGTCGG-----AGATTACAGTCTCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25649134 32 - 121039945 -GCCCTTCTTGGATGGGGTGG--------TTACCGTCTCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113468348 35 - 169600520 -GCCCTTCTTGGATGGGGCAG-----AGGTTACCATCTCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106537518 35 - 171882078 -GCCCTTCTTGGATGGGTCAG-----AGGTTACCGTGTCTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4009714 35 +   4820037 -GCCCTTCTTGGATGGGGCAG-----AGGTTACCATCTCCT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9928870 35 +  10730278 -GCCCTTCTTGGATGGGGCAG-----AGGTTACCATCTCAT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3123978 35 +  24206276 -TCCCTTCTTGGATGGGTCAG-----AGGTTACCGTGTCTT
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3100856 34 +   3745603 -GCCCTCCTT-GATGGGGCAG-----AAGTTACCGTCTCCT
i aotNan1.NW_018511953v1    C 0 I 20
s canFam3.chr9                5825992 40 -  61074082 -GGCTTCCTCAGCTGGTGTGGGGGGTAAGTTACCATCTCCT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             403631 36 -    584178 AGCCCTTTGCCAGTGGGACAG-----GGGTTACCGTCTCTT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263278 159 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=51456.000000
s hg38.chr15_KI270850v1_alt    133245 20 +    430880 TCAGCTCACCCGACTTCTC---C
s panPan2.chr15              23131771 23 -  99763055 TCACCTCGCCTGGCTTCTCCTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        56346 20 -    378907 TCAGCTCACCCGGCTTCTT---C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25649166 23 - 121039945 TCACCTCGTCTAGCTTCTCCTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113468383 23 - 169600520 TCACCTTGCTCAGCTTCTCCTGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106537553 20 - 171882078 TCAGCTCGCCCAGCTTCTT---C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4009749 23 +   4820037 TCACCTTGCTCAGCTTCTCCTGC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9928905 23 +  10730278 TCACCTTGCTCAGCTTCTCCTGC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3124013 20 +  24206276 TCAGCTCGCCCAGCGTTTT---C
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5826032 23 -  61074082 TTAGCTCTCCCAGCTTCTCCTGC
i canFam3.chr9              C 0 I 21
s dasNov3.JH564958             403667 20 -    584178 TGAGCTCTGCCAGCTTTTCC---
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3100890 20 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263278 159 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=1171312.000000
s hg38.chr15_KI270850v1_alt    133265 277 +    430880 ------------------------AGCTCCTTT---ACTTGCTGCTCCAACTGCAGTGTGCT---------CTTGTTCTCGTTGTTCTGGACAGAGAGAAGCAATCAGTGGCCACCCACTAAAACTGGAGACCCCAGAACTTAGTGTCTGCCTCCCATGGCACCGGGAAGGGTGGAGGCAGGTTAGAAAAAT-ATCCCCTCTCTCCCACAGCCATCAGAGCGGG---------GCTCTGGCTCACA-GATGCCTTTAGAAGTACCATTT---CATGTGAAGGCTACA--ATGccccattttacaggtggggaaacaaaggccttgaggg
s panPan2.chr15              23131794 282 -  99763055 ------------------------AGCTCCTTT---ACTTGCTTCTCCAACTGCAGTGTGCT---------CTTGTTCTCGTTGTTCTGGAC----AGAAGCAATCAGTGGCCATCCACTGCAGCTGGAGACCCCTGAACTTGGTGTCTGCCTCACATGTCACT-GGAAAGGTGGAGGCAGGTTAGAAAAATCATCCCCTCTCCCCCACAGCCATCAGAGGAGGGCCTGATGAGCTCTGGCTCACA-GGTGCCTTTAGAAGTACCATTT---CATGTGAGGGCTGCA--CTGccccattttacaggtggggaaacaaaggcctggaggg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        56366 278 -    378907 ------------------------AGCTCCTTT---ACTTGTTCCTCCAACTGCAGTGCGCT---------CTTGTTCTCGTTGTTCTGGACAGAGAGAAACAATCAGTGGCCACCCACTAAAACTGGAGACCCCAGAACTTAGTGTCTGCCTCCCATGGCACCGGGAAGGGTGGAGGCAGGTTAGAAAAATCATCCCCTCTCTCCCACAGCCATCAGAGCAGG---------GCTCTGGCTCACA-GGTGCCTTTAGAAGTACCATTT---CATGTGAAGGCTAca--atgccccattttacaggtggggaaacaaaggccttgaggg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25649189 287 - 121039945 ------------------------AGCTCCTTT---ACTCCCTGCTCCGAATGCACTGCGCT---------CTTGTTCTCGTTGTTCTGCACAGAGAGAAGTAATCAGTGGCCACCCACTGCAGCTGGAGACACCAGAACTGGGTGTCTGCCTCCCATGTCACCGGGAAGGGTGGAGACAGGTTAGAAAAATCATCCCTTCTCCCCCACAGCCATCAGACGAGGGCCTGATGAGCTGTAGCTCACA-GGTGCCTTTAGAAGTACCATTT---CATGTGAGGGCTACa--ctgccccattttacaggtggggaaacaaaggcctggaggg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113468406 287 - 169600520 ------------------------AGCTCCTTT---ACTTGCTGTTCCAACTGCAGTGTGCT---------TTTGTTCTTGTTGTTCTGGACAGAGAGAAGCAATCAGTGGCCAGCCACTGCAGCTGGAGACCCCAGAACTTGGTGTCTGCCTCCCATGTCACCGGAAAGGGTGGAGGTAGGTTAGAAAAATTATCCCCTCTTCCCCACAGCCATCAGAGCAGGGCCTGATGAGCTCTGGCTCACA-GATGCCTTTAGAAATACCATGT---CATGTGAGGGCTACA--CTGccccattttacaggtagggaaacaaaggcctggaggg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106537573 278 - 171882078 ------------------------AGCTCCTTT---ACTTGCGGCTCCAACTGCAGTGCGCT---------CTTGTTCTCATTGTTCTGGACAGAGAGAAGCAATCATTGGCCACCCACTATAGCTGGAGACCCCAGAACTTGGTGTCTGCCTCCCATAGCACCGGGAAGGGTGGAGGCAGGTAAGAAAAATCATCCCCTCTCTCCCACAGCCATCAGAGCAGG---------GCTCTGGCTCACA-GGTGCCTTTAGAAGTACCATTT---CATGTGAGGGCTACA--ATGccccattttacaggtggggaaacaaaggcctggaggg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4009772 287 +   4820037 ------------------------AGCTCCTTT---ACTTGCTGTTCCAACTGCAGTGCGCT---------TTTGTTCTTGTTGTTCTGGACAGAGAGAAGCAATCAGTGGCCAGCCACTGCAGCTGGAGACCCCAGAACTTGGTGTCTGCCTCCCATGTCACCGGAAAGGGTGGAGGTAGGTTAGAAAAATTATCCCCTCTTCCCCACAGCCATCAGAGCAGGGCCTGATGAGCTCTGGCTCACG-GATGCCTTTAGAAATACCATGT---CATGTGAGGGCTACA--CTGccccattttacaggtggggaaacaaaggcctggaggg
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9928928 287 +  10730278 ------------------------AGCTCCTTT---ACTTGCTGCTCCAACTGCAGTGTGCT---------TTTGTTCTCGTTGTTCTGGACAGAGAGAAGCAATCAGTGGCCATCCACTGCAGCTGGAGACCCAAGAACTTGGTGTCTGCCTCCCATGTCACCGGAAAGGGTGGAGGTAGGTTAGAAAAATTATCCCCTCTTCCCCACAGCCATCAGAGCAGGGCCTGATGAGCTCTGGCTCACG-GATGCCTTTAGAAGTACCATGT---CATGTGAGGGCTACA--CTGCCCCATTTTACAGGTGGGGAAACAAACGCCTGGAGGG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3124033 277 +  24206276 ------------------------AGCTCCTTT---ACTTGCGGCTCCAACTGCAGTGCGCT---------CTTGTTCTCATTGTTCTGGACAGAGAGAAGCAATCATTGGCCACCCACTATAGCTGGAGACCCTAGAATTTGGTGTCTGCCTGCCATGGCACCGCGAAGGGTGGAAGCAGGTTAGAAAAATCAT-CCCTCTCTCCCACAGCCATCAGAGCAGG---------GCTCTGGCTCACA-GGTGCCTTTAGAAGTACCATTT---CATGTGAGGGCTACA--ATGccccattttacaggtggggaaacaaaggcctggaggg
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3100910 269 +   3745603 ------------------------AGCTCCTTT---CCTTCCTGCTCGAAATGCAGTGCGCT---------CCTGATCTCATTGTCCTAGACAGAGAGAAGCAATCAGCGGCCACCCACTGCAGCTGGAGACCCCAGAACCTGGTGTCTGCCTCCCATGGCACCGGGAAGGGTGGAGGCAGGTTAGAAAAATTGTCTCCTTTCTCCCACAGCCATCAGAGCAGG---------GCTGTGGCTCACA-GGTGCCTTTAGAAGCCCCATTT---CATAT---------a--ctcccccatttcacaggcgggaaaacaaaggcctggaggg
i aotNan1.NW_018511953v1    I 20 C 0
s canFam3.chr9                5826076 275 -  61074082 ------------------------AGCTCCTTCTTGACATGCTGCTCCGACTGCAGTGCGGTAGTAATCTCCATGTTCTCGTTGGACTGGAGAGAGAAGAGGAGTCAGTGGCC-----------------ACCCCAGAACATGGAGTCTACCTCCCACAGTGCAGGGAAGAGTGGAGGCAGGT----GTCCTCACCACCTCTGCCCCAC--TCATCTCAGCAGGGC-------TCTCCGGCTCACAGGGTGCCTTCAAGGGCACCATTTTCACATTGGGTGCATACACCCTtcccccatttacacgtggggagacaaaggcctagaggg
i canFam3.chr9              I 21 I 45
s dasNov3.JH564958             403687 298 -    584178 TGCAGCTGTTCCAGCTTCTTGGCCAGCTCTTTCTTAACATACTGTTCTGACTGCAGGGCACTGGTCATCTCCATATTCTCATTGCTCTGAACAGAGAGAAGTAATCAGCAACTACCCAATGCAGCCAAAGACCCCAGAACTTGGTGTCCCCCT-CCACAGCTCAGTTAAGGGTGAAGACAAGTTGGAAAATACGCCCCCTC-ACCCCACTCACATCTGAGCATG---------GAT----CTCACA-TGGGC----------ACCACTG---CACCTGGAGGTCGGC--ACAccccactttataggtgggaaaaccaaggcccagaggg
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263278 159 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=93177.000000
s hg38.chr15_KI270850v1_alt    133542 28 +    430880 -------------------------------------ctaggGAAGAGGGCAGCCTCCCCAGGTG
s panPan2.chr15              23132076 28 -  99763055 -------------------------------------ACAGGGATGAGGGCAGGCTCCCCAGGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        56644 28 -    378907 -------------------------------------ctaggGAAGAGGGCAGCCTCCCCAGGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25649476 28 - 121039945 -------------------------------------ACAGGGATGAGGGCAGGCTCCCCAGGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113468693 28 - 169600520 -------------------------------------ctaggGATGAGGGCAGGCTGCCCAGGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106537851 28 - 171882078 -------------------------------------ctaggGAAGAGGGCAGACTCCCCAGGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4010059 28 +   4820037 -------------------------------------ctaggGATGAGGGCAGGCTGCCCAGGTG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9929215 28 +  10730278 -------------------------------------CTAGGGATGAGGGCAGGCTGCCCAGGTG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3124310 28 +  24206276 -------------------------------------CTAGGGAAGAGGGCAGGCTCCCCAGGTG
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3101179 27 +   3745603 -------------------------------------ctgGGGAGGAGGGCAGGCTCCCCAGGT-
i aotNan1.NW_018511953v1    C 0 C 0
s dasNov3.JH564958             403985 64 -    584178 ttcaagtgccttattctacaccaaaggacatggcaagtgaggaatgagggcaggttagccAGGG-
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr9                5826351 45 -  61074082 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263278 159 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=78180.000000
s hg38.chr15_KI270850v1_alt    133570 20 +    430880 GGGCAACGTACCAGCTCCTC
s panPan2.chr15              23132104 20 -  99763055 GGGCAACCCACCAGATCCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        56672 20 -    378907 GGGAAACGCACCAGCTCCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25649504 20 - 121039945 GGGCAACCCACCAGATCCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113468721 20 - 169600520 GGGCAACCCACCAGATCCTC
i rheMac8.chr7              C 0 I 289
s macFas5.chr7              106537879 20 - 171882078 GGGGAACCCACCAGCTCCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4010087 20 +   4820037 GGGCAACCCACCAGATCCTC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9929243 20 +  10730278 GGGCTACCCACCAGATCCTC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3124338 20 +  24206276 GGGCAACCCACCAGTTCCTG
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3101206 20 +   3745603 GGGCAATGCACCAGCTCCTC
i aotNan1.NW_018511953v1    C 0 I 17
s canFam3.chr9                5826396 20 -  61074082 GGGCTACACACCAGCTTGAC
i canFam3.chr9              I 45 C 0
s dasNov3.JH564958             404049 20 -    584178 GCGCTGCGCACCAGCCTGAT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263278 159 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=60702.000000
s hg38.chr15_KI270850v1_alt    133590 22 +    430880 GAAGCCGCTGCGTGGCTCGGCC
s panPan2.chr15              23132124 22 -  99763055 GAAGCCACACTGTGGCTCGGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        56692 22 -    378907 GAAGCCGCTGTGTGACTCCGCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25649524 22 - 121039945 GAAGCCGCGCTGTGGCTCGGCC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106537899 22 - 171882078 GAAGCTGCTGTGTGGCTCCGCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4010107 22 +   4820037 AAAGCTGCACTGTGGCTCGGCC
i macNem1.NW_012011533v1    C 0 I 267
s cerAty1.NW_011999477v1      9929263 22 +  10730278 AAAGCTGCACTGTGGCTCGGCC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3124358 22 +  24206276 GAAGCTGCTGTGTGGCTCCGCC
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5826416 22 -  61074082 GAAGCCGTTCTGCAGCTCAACC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             404069 22 -    584178 AAAGCCATTCTGCAACTCGACC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3101226 17 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263278 159 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e rheMac8.chr7              113468741 289 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=17463.000000
s hg38.chr15_KI270850v1_alt    133612 7 +    430880 CGCTGCT
s panPan2.chr15              23132146 7 -  99763055 AGCTGCT
i panPan2.chr15             C 0 T 41738
s gorGor5.CYUI01015946v1        56714 7 -    378907 CACTGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25649546 7 - 121039945 AGCTGCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106537921 7 - 171882078 TGCTGCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9929285 7 +  10730278 AGCTGCT
i cerAty1.NW_011999477v1    C 0 I 29
s chlSab2.chr29               3124380 7 +  24206276 TGCTGCT
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5826438 7 -  61074082 AGCTGCT
i canFam3.chr9              C 0 I 9
s dasNov3.JH564958             404091 7 -    584178 AGTTGCT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3101226 17 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263278 159 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e macNem1.NW_012011533v1      4010129 267 +   4820037 I
e rheMac8.chr7              113468741 289 - 169600520 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=-3212.000000
s hg38.chr15_KI270850v1_alt    133619  3 +    430880 ---------CGT--------------
s gorGor5.CYUI01015946v1        56721  3 -    378907 ---------CAT--------------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25649553  3 - 121039945 ---------TGT--------------
i nomLeu3.chr6              C 0 I 26
s macFas5.chr7              106537928  3 - 171882078 ---------CGT--------------
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3124387  3 +  24206276 ---------CGT--------------
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5826454  3 -  61074082 ---------CGC--------------
i canFam3.chr9              I 9 I 14
s dasNov3.JH564958             404098 26 -    584178 CCTTGAGCTCGCGGTTCTGGGAGAGT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3101226 17 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23132153 41738 -  99763055 T
e colAng1.NW_012116021v1       263278 159 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e cerAty1.NW_011999477v1      9929292 29 +  10730278 I
e macNem1.NW_012011533v1      4010129 267 +   4820037 I
e rheMac8.chr7              113468741 289 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=9407.000000
s hg38.chr15_KI270850v1_alt    133622  80 +    430880 ACAGGGCT-------------TCCCACCcca---gctccagcatcctctccagctcc----cgcagcctctccagctcccg--cagcctctccagctccc------------------------------------------------------------------------------------------------------------------------------------------gc
s gorGor5.CYUI01015946v1        56724  61 -    378907 AGAGGGCT-------------TCCCA-CCCA---GCTCCAGCAT----------------------CCTCTCCAGCTCCCA--CAGCCTCTCCAGCTCCT------------------------------------------------------------------------------------------------------------------------------------------GC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106537931 200 - 171882078 AGAGGGCT-------------TCCCACCCCA---GCTCCAGCAT----------------------CCTCTCCAGCTCCCG--CAGTGTCTCCTGCTCCCACAGCCTCTGATCCTGCTCCCGCAGCCTCTCCTGTTCCAGCATCTCCTCCACTTGGTCCAGCAGCTGCTCCTCCTCCAGCAGCCTCTTCTGCTCCTCCTATCGCCTCTCCCGTTCCAAAAGCTTCTCCACCTGCTCCAGC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3124390  62 +  24206276 AGAGGGCT-------------TCCCACCCCA---GCTCCAGCAT----------------------CCTCTCCAGCTCCCG--CAGCCTCTCCAGCTCCC------------------------------------------------------------------------------------------------------------------------------------------GC
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5826471 102 -  61074082 GCACGGCTGATGGTGGTGCGATCGCTCTGCATGCTCTCCAGAATCTGCTTGCGTTCCTCTGCCTGCTCCCCCCAGCACTCGGCTGCCCGCTCCAGCTCCA------------------------------------------------------------------------------------------------------------------------------------------GC
i canFam3.chr9              I 14 I 2
s dasNov3.JH564958             404124 102 -    584178 GCGCGGCTGATGGTGGTGCGGTCGCTCTGCATGCTCTCCAGAATCTGTTCCCGCTCGGCCGCCTGCTCTCCCCAGCGCTCAGCTGCTCTCTCGAGCTCCA------------------------------------------------------------------------------------------------------------------------------------------GC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3101226  17 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23132153 41738 -  99763055 T
e colAng1.NW_012116021v1       263278 159 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e cerAty1.NW_011999477v1      9929292  29 +  10730278 I
e macNem1.NW_012011533v1      4010129 267 +   4820037 I
e rheMac8.chr7              113468741 289 - 169600520 I
e nomLeu3.chr6               25649556  26 - 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=2949.000000
s hg38.chr15_KI270850v1_alt    133702 8 +    430880 AGAGTCTC
s gorGor5.CYUI01015946v1        56785 8 -    378907 AGAGTCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106538131 8 - 171882078 AGCCTCTC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3124452 8 +  24206276 AGTGTCTC
i chlSab2.chr29             C 0 C 0
e aotNan1.NW_018511953v1      3101226 17 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             404226 0 -    584178 C
e canFam3.chr9                5826573 2 -  61074082 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23132153 41738 -  99763055 T
e colAng1.NW_012116021v1       263278 159 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e cerAty1.NW_011999477v1      9929292 29 +  10730278 I
e macNem1.NW_012011533v1      4010129 267 +   4820037 I
e rheMac8.chr7              113468741 289 - 169600520 I
e nomLeu3.chr6               25649556 26 - 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=27686.000000
s hg38.chr15_KI270850v1_alt    133710 81 +    430880 CTGCTGCCACAGCCTCTCATCCTGTTGCCG-------------AAGCCTCTCCTGCTCCAGGAGCTCCTCCACCTCGTCCAGCAGCCTCTCCCT
s gorGor5.CYUI01015946v1        56793 81 -    378907 CTGCTGCCACAGCCTCTCATCCTGCTCCCG-------------AAGCCTCTCCTGTTCCAGCAGCTCCTCCACCTCGTCCAGCAGCCTCTCcct
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106538139 63 - 171882078 CTGCTCCCGCAGTCTCTCATCCTGCTCCCG-------------CAACCTCTCCTGTTCCAACAGTTCCTCCACCTG------------------
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3124460 81 +  24206276 ATGCTCCCACAGCCTCTGATCCTGCTCCCG-------------CAGCCTCTCCTGTTCCAGCATCTCCTCCACTTGGTCCAGCAGCTGCTCCTC
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5826575 66 -  61074082 ------------CCGCTGCTCCTGCTCCCGGTTCAGGCGACTCAAACCTTCGTTG----------TCTTTCACTTGGGCCTGCACCTG------
i canFam3.chr9              I 2 C 0
e aotNan1.NW_018511953v1      3101226 17 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             404226  0 -    584178 C
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23132153 41738 -  99763055 T
e colAng1.NW_012116021v1       263278 159 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e cerAty1.NW_011999477v1      9929292 29 +  10730278 I
e macNem1.NW_012011533v1      4010129 267 +   4820037 I
e rheMac8.chr7              113468741 289 - 169600520 I
e nomLeu3.chr6               25649556 26 - 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=29360.000000
s hg38.chr15_KI270850v1_alt    133791 27 +    430880 CTCCAGCAGCCTCTCCTGCTCCTCCTG
s gorGor5.CYUI01015946v1        56874 27 -    378907 ctccagcagcctctcctgctcctcctg
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106538202 27 - 171882078 CTCCAGCAGCCTCTCCTGTTCCTCCTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3124541 27 +  24206276 CTCCAGCAGCCTCTTCTGCTCCTCCTG
i chlSab2.chr29             C 0 I 138
s colAng1.NW_012116021v1       263437 27 +   4111199 CTCCAGCAGCTTCTCCTCCTGCTCCTG
i colAng1.NW_012116021v1    I 159 C 0
s canFam3.chr9                5826641 27 -  61074082 CTCGGCCAGGCTCTCCAGCTCCTTCTG
i canFam3.chr9              C 0 C 0
e aotNan1.NW_018511953v1      3101226 17 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             404226  0 -    584178 C
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23132153 41738 -  99763055 T
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e cerAty1.NW_011999477v1      9929292 29 +  10730278 I
e macNem1.NW_012011533v1      4010129 267 +   4820037 I
e rheMac8.chr7              113468741 289 - 169600520 I
e nomLeu3.chr6               25649556 26 - 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=319.000000
s hg38.chr15_KI270850v1_alt    133818 12 +    430880 CC---------------------GCCTCTCCTG
s gorGor5.CYUI01015946v1        56901 33 -    378907 ccgcctctcctgctcctcctgctgcctctcctg
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106538229 12 - 171882078 ---------------------CCACCTCTCCTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3124706 12 +  24206276 ---------------------CCGTCTCTCCTG
i chlSab2.chr29             I 138 C 0
s colAng1.NW_012116021v1       263464 12 +   4111199 ---------------------CAGCCTCTCCTG
i colAng1.NW_012116021v1    C 0 I 149
s canFam3.chr9                5826668 18 -  61074082 -------------TAGTTGTTCAGTCTCGGC--
i canFam3.chr9              C 0 C 0
e aotNan1.NW_018511953v1      3101226 17 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             404226  0 -    584178 C
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23132153 41738 -  99763055 T
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e cerAty1.NW_011999477v1      9929292 29 +  10730278 I
e macNem1.NW_012011533v1      4010129 267 +   4820037 I
e rheMac8.chr7              113468741 289 - 169600520 I
e nomLeu3.chr6               25649556 26 - 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=27700.000000
s hg38.chr15_KI270850v1_alt    133830 64 +    430880 TTCTAACAGCTTCTCCACCTCTTCCAGCAGCCT---------CTCCTGCCCTGGCAGCTTCTCCTGTT-------------------CACAC
s gorGor5.CYUI01015946v1        56934 64 -    378907 TTCTAACAGCTTCGCCACCTCTTCCAGCAGCCT---------CTCCTGCCCTGGCAGCTTCTCCTGTT-------------------CACAC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106538241 64 - 171882078 TTCCAATAGCTTCTCCACCTGCTCCAACAGCCT---------CTCCTGCTCTGGAAGCCTCTCCTCCT-------------------CCCGC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3124718 64 +  24206276 TTCCAACAGCTTTTTCACCTCCTCCAGCAGCCT---------CTCCTGCTCTGGCAGCCACTCCTGCT-------------------CCTGT
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5826686 91 -  61074082 GTGCAGCCGCTGCTGCTCCTCCTCCAAGGGCCTGGCTGGGGGCTCCTGGGCTGGGGGC-ACCACTGTGGGGAGCAGGGGGAGGGGGACACAC
i canFam3.chr9              C 0 I 6
e aotNan1.NW_018511953v1      3101226 17 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             404226  0 -    584178 C
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23132153 41738 -  99763055 T
e colAng1.NW_012116021v1       263476 149 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e cerAty1.NW_011999477v1      9929292 29 +  10730278 I
e macNem1.NW_012011533v1      4010129 267 +   4820037 I
e rheMac8.chr7              113468741 289 - 169600520 I
e nomLeu3.chr6               25649556 26 - 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=17440.000000
s hg38.chr15_KI270850v1_alt    133894 19 +    430880 AGCCTCTCCTCC-----TGTTCAC
s gorGor5.CYUI01015946v1        56998 19 -    378907 AGCCTCTCCTCC-----TGTTCAC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              113469030 19 - 169600520 AGCCTCTCCTTT-----TGTTCAC
i rheMac8.chr7              I 289 C 0
s macFas5.chr7              106538305 21 - 171882078 AGCCTCTCCTCTCC---TCTTCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4010396 19 +   4820037 AGCCTCTCCTTT-----TGTTCAC
i macNem1.NW_012011533v1    I 267 C 0
s chlSab2.chr29               3124782 19 +  24206276 ATCCTCTCATCC-----TGCTCAT
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5826783 24 -  61074082 GGCCTCTCACCTCTGTGCCTTCAA
i canFam3.chr9              I 6 C 0
e aotNan1.NW_018511953v1      3101226 17 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             404226  0 -    584178 C
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23132153 41738 -  99763055 T
e colAng1.NW_012116021v1       263476 149 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e cerAty1.NW_011999477v1      9929292 29 +  10730278 I
e nomLeu3.chr6               25649556 26 - 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=10849.000000
s hg38.chr15_KI270850v1_alt    133913 15 +    430880 ATAGCCTCTCCTCCT
s rheMac8.chr7              113469049 15 - 169600520 ATAGTCTCTCCTCCT
i rheMac8.chr7              C 0 I 303
s macFas5.chr7              106538326 15 - 171882078 GCAGCTTCTCTACCT
i macFas5.chr7              C 0 I 18
s macNem1.NW_012011533v1      4010415 15 +   4820037 ATAGTCTCTCCTCCT
i macNem1.NW_012011533v1    C 0 I 29
s chlSab2.chr29               3124801 15 +  24206276 GTATCCTCTCCACCT
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5826807 15 -  61074082 AAAAGCCCTCTTCTT
i canFam3.chr9              C 0 C 0
e aotNan1.NW_018511953v1      3101226 17 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             404226  0 -    584178 C
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23132153 41738 -  99763055 T
e colAng1.NW_012116021v1       263476 149 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e cerAty1.NW_011999477v1      9929292 29 +  10730278 I
e nomLeu3.chr6               25649556 26 - 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I
e gorGor5.CYUI01015946v1        57017  0 -    378907 C

a score=5759.000000
s hg38.chr15_KI270850v1_alt    133928 63 +    430880 GTTCACACAGCCTCT-------C------------------CTCCTGTTCACATAGCCTCTCCTCCTGTTCACACAGCCTCTC---------------CTCCT
s macFas5.chr7              106538359 96 - 171882078 GCTCTAGCAGCTTCT-------CCTCCTCCTCCTCCGGTCTCTCCTGTTCCAACAGCTTTTTCACCTCCTCCAGCAGCCTCTCCTGCTCTGGCAGCCACTCCT
i macFas5.chr7              I 18 C 0
s chlSab2.chr29               3124816 63 +  24206276 GCTCACGTATCCTCT-------C------------------CTCCTGCCCAGATAGCCTCTCCTCCTGCTCATGTAGTTTCTC---------------CTCCT
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5826822 68 -  61074082 GATC-CACAGCTCCTAACTGGGC------------------CTCCTCGCCCCAAACCTTGGCTTCCTG-GCTCACAATCCCTC---------------ACCCT
i canFam3.chr9              C 0 T 317
e aotNan1.NW_018511953v1      3101226 17 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             404226  0 -    584178 C
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23132153 41738 -  99763055 T
e colAng1.NW_012116021v1       263476 149 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e cerAty1.NW_011999477v1      9929292 29 +  10730278 I
e macNem1.NW_012011533v1      4010430 29 +   4820037 I
e rheMac8.chr7              113469064 303 - 169600520 I
e nomLeu3.chr6               25649556 26 - 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I
e gorGor5.CYUI01015946v1        57017  0 -    378907 C

a score=22159.000000
s hg38.chr15_KI270850v1_alt    133991 113 +    430880 GTTCACGTAGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACAC
s macFas5.chr7              106538455 113 - 171882078 GCTCCCATAGACACTCATCCTGCTCACGTATCCTCTCCTCCTGCTCACGTATCCTCTCCTCCTGCCCAGATAGCCTCTCCTCCTGCTCATGTATTTTCTCCTCCTGCTCACGT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3124879 113 +  24206276 GCTCATGTAGTTTCTCCTCCTGCCCAGATAACTTCTCCTCCTGCTCATGTATCCTCTCCTCCTGCCCAGATAGCTTCTCCTCCTGCTCACGTATCCTCTCCTCCTGCCCAGAT
i chlSab2.chr29             C 0 C 0
e aotNan1.NW_018511953v1      3101226  17 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             404226   0 -    584178 C
e canFam3.chr9                5826890 317 -  61074082 T
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23132153 41738 -  99763055 T
e colAng1.NW_012116021v1       263476 149 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e cerAty1.NW_011999477v1      9929292  29 +  10730278 I
e macNem1.NW_012011533v1      4010430  29 +   4820037 I
e rheMac8.chr7              113469064 303 - 169600520 I
e nomLeu3.chr6               25649556  26 - 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I
e gorGor5.CYUI01015946v1        57017   0 -    378907 C

a score=1806.000000
s hg38.chr15_KI270850v1_alt    134104 7 +    430880 AGCCTCT
s panPan2.chr15              23090415 7 -  99763055 AGCCTCT
i panPan2.chr15             T 41738 C 0
s macFas5.chr7              106538568 7 - 171882078 ATCCTCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3124992 6 +  24206276 AG-CTCT
i chlSab2.chr29             C 0 C 0
e aotNan1.NW_018511953v1      3101226 17 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             404226 0 -    584178 C
e canFam3.chr9                5826890 317 -  61074082 T
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263476 149 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e cerAty1.NW_011999477v1      9929292 29 +  10730278 I
e macNem1.NW_012011533v1      4010430 29 +   4820037 I
e rheMac8.chr7              113469064 303 - 169600520 I
e nomLeu3.chr6               25649556 26 - 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I
e gorGor5.CYUI01015946v1        57017 0 -    378907 C

a score=9082.000000
s hg38.chr15_KI270850v1_alt    134111 14 +    430880 CCTCCTGTTCACGT
s panPan2.chr15              23090422 14 -  99763055 CCTCCTGCTTTTGT
i panPan2.chr15             C 0 C 0
s macFas5.chr7              106538575 14 - 171882078 CCTCCTGCTCAGGT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3124998 14 +  24206276 CCTCCTGCTCACGT
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3101243 14 +   3745603 CCTCCTGCTCAAGA
i aotNan1.NW_018511953v1    I 17 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             404226  0 -    584178 C
e canFam3.chr9                5826890 317 -  61074082 T
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263476 149 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e cerAty1.NW_011999477v1      9929292 29 +  10730278 I
e macNem1.NW_012011533v1      4010430 29 +   4820037 I
e rheMac8.chr7              113469064 303 - 169600520 I
e nomLeu3.chr6               25649556 26 - 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I
e gorGor5.CYUI01015946v1        57017  0 -    378907 C

a score=7337.000000
s hg38.chr15_KI270850v1_alt    134125 21 +    430880 AGCCTCTCCTCCTGTTCACAC
s panPan2.chr15              23090436 21 -  99763055 AGCCTCTCCTCCTTGTCCCAC
i panPan2.chr15             C 0 C 0
s macFas5.chr7              106538589 21 - 171882078 ATCCTCTCCTCCTGCTCATGT
i macFas5.chr7              C 0 C 0
s aotNan1.NW_018511953v1      3101257 21 +   3745603 AGCCTCTCCTCCTGTTCTCTC
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             404226  0 -    584178 C
e canFam3.chr9                5826890 317 -  61074082 T
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263476 149 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e chlSab2.chr29               3125012  0 +  24206276 C
e cerAty1.NW_011999477v1      9929292 29 +  10730278 I
e macNem1.NW_012011533v1      4010430 29 +   4820037 I
e rheMac8.chr7              113469064 303 - 169600520 I
e nomLeu3.chr6               25649556 26 - 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I
e gorGor5.CYUI01015946v1        57017  0 -    378907 C

a score=9890.000000
s hg38.chr15_KI270850v1_alt    134146 14 +    430880 AGCCTCTCCTCCTG
s panPan2.chr15              23090457 14 -  99763055 AGCCTCTCCTCCTG
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               25649582 14 - 121039945 AGTCTCTCCTCCTC
i nomLeu3.chr6              I 26 C 0
s macFas5.chr7              106538610 14 - 171882078 ATCTTCTCCTCCTG
i macFas5.chr7              C 0 C 0
s aotNan1.NW_018511953v1      3101278 14 +   3745603 AGCCTCACCTCCTG
i aotNan1.NW_018511953v1    C 0 I 100
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             404226  0 -    584178 C
e canFam3.chr9                5826890 317 -  61074082 T
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263476 149 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e chlSab2.chr29               3125012  0 +  24206276 C
e cerAty1.NW_011999477v1      9929292 29 +  10730278 I
e macNem1.NW_012011533v1      4010430 29 +   4820037 I
e rheMac8.chr7              113469064 303 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I
e gorGor5.CYUI01015946v1        57017  0 -    378907 C

a score=23267.000000
s hg38.chr15_KI270850v1_alt    134160 70 +    430880 TTCACGTAGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACAC
s panPan2.chr15              23090471 70 -  99763055 CTTTCGCAGCCACTCCTCCTGCTTTTGCAGCCTCTCCTCCTGCTTTCGTAGCCTCTTCTCCTGGTCCCAC
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               25649596 70 - 121039945 CTTTCGCAGCCTTTCCTCCTCCTTTCGCAGCCTCTGCTCCTGCTTTCGCAGCCTCTTGCCCTGCTCCCGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106538624 70 - 171882078 CTCACGTATCCTCTCCTCCTGCTCATGTATCCTCTCCTCCTGCCCAGATAGCCTCTCCTCCTGCTCATGT
i macFas5.chr7              C 0 C 0
e aotNan1.NW_018511953v1      3101292 100 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             404226  0 -    584178 C
e canFam3.chr9                5826890 317 -  61074082 T
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263476 149 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e chlSab2.chr29               3125012  0 +  24206276 C
e cerAty1.NW_011999477v1      9929292 29 +  10730278 I
e macNem1.NW_012011533v1      4010430 29 +   4820037 I
e rheMac8.chr7              113469064 303 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I
e gorGor5.CYUI01015946v1        57017  0 -    378907 C

a score=28854.000000
s hg38.chr15_KI270850v1_alt    134230 42 +    430880 AGCCTCTCCTCCTGTTCACGTAGCCTCTCCTCCTGTTCACAC
s panPan2.chr15              23090541 42 -  99763055 AGCCTCTCCTCCTGCTTTCGCAGCCGCTTCTCCTCCTTTTGC
i panPan2.chr15             C 0 I 41913
s nomLeu3.chr6               25649666 39 - 121039945 AGCATTTCCTTTTGC---CGTAGCATTTCCTTTTGTTGACAC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106538694 42 - 171882078 ATACTCTCCTCCTGCTCACGTATCCTCTCCTCCTGCTCACGT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9929321 42 +  10730278 AGCCTCTCCTCCTGCATTCGCAGCCTCTCCTCCTTCTCCCAC
i cerAty1.NW_011999477v1    I 29 C 0
s chlSab2.chr29               3125012 42 +  24206276 ATCCTCTCCTCCTGCTCATGTATCCTCTCCTCCTGCCCAGAT
i chlSab2.chr29             C 0 C 0
e aotNan1.NW_018511953v1      3101292 100 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             404226  0 -    584178 C
e canFam3.chr9                5826890 317 -  61074082 T
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263476 149 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e macNem1.NW_012011533v1      4010430 29 +   4820037 I
e rheMac8.chr7              113469064 303 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I
e gorGor5.CYUI01015946v1        57017  0 -    378907 C

a score=14245.000000
s hg38.chr15_KI270850v1_alt    134272 19 +    430880 AGCCTCTCCTCCTGTTCAT
s nomLeu3.chr6               25649705 16 - 121039945 AGTCTctcct---gctccc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106538736 19 - 171882078 ATCCTCTCCTCCTGCCCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4010459 19 +   4820037 AGCCTCTCCTCCTGCTTTT
i macNem1.NW_012011533v1    I 29 C 0
s cerAty1.NW_011999477v1      9929363 19 +  10730278 AGCCTCTCTTCCTGCTTTT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3125054 19 +  24206276 AGCTTCTCCTCCTGCTCAC
i chlSab2.chr29             C 0 C 0
e aotNan1.NW_018511953v1      3101292 100 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             404226  0 -    584178 C
e canFam3.chr9                5826890 317 -  61074082 T
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23090583 41913 -  99763055 I
e colAng1.NW_012116021v1       263476 149 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e rheMac8.chr7              113469064 303 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I
e gorGor5.CYUI01015946v1        57017  0 -    378907 C

a score=15436.000000
s hg38.chr15_KI270850v1_alt    134291 13 +    430880 GTAGCCT---CTCCTC
s gorGor5.CYUI01015946v1        57017 13 -    378907 GTAGCCT---CTCCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25649721 16 - 121039945 gcgccctctgctcctc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106538755 13 - 171882078 ATAGCCT---CTCCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4010478 13 +   4820037 GAAGCCT---CTCCTG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9929382 13 +  10730278 GTAGCCT---CTCCTC
i cerAty1.NW_011999477v1    C 0 I 189
s chlSab2.chr29               3125073 13 +  24206276 GTATCCT---CTCCTC
i chlSab2.chr29             C 0 C 0
e aotNan1.NW_018511953v1      3101292 100 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             404226  0 -    584178 C
e canFam3.chr9                5826890 317 -  61074082 T
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23090583 41913 -  99763055 I
e colAng1.NW_012116021v1       263476 149 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e rheMac8.chr7              113469064 303 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=41533.000000
s hg38.chr15_KI270850v1_alt    134304 31 +    430880 CTGTTCATGTAGCCTCTCCTCCTGTTCACGT
s gorGor5.CYUI01015946v1        57030 31 -    378907 CTGTTCACGTAGCCTCTCCTCCTGTTCACTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25649737 31 - 121039945 ctgctcttggagcctctgctcctgctcctgG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106538768 31 - 171882078 CTGCTCATGTATCTTCTCCTCCTGCTCACGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4010491 31 +   4820037 CTGCTCTCGGAGCCTCTCCTCCTGCTCCTGG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9929584 31 +  10730278 CTGCTCTCGGAGCCTCTCCTCCTGCTCCTGG
i cerAty1.NW_011999477v1    I 189 C 0
s chlSab2.chr29               3125086 31 +  24206276 CTGCTCATGTATCCTCTCCTCCTGCTCACGT
i chlSab2.chr29             C 0 C 0
e aotNan1.NW_018511953v1      3101292 100 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             404226  0 -    584178 C
e canFam3.chr9                5826890 317 -  61074082 T
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23090583 41913 -  99763055 I
e colAng1.NW_012116021v1       263476 149 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e rheMac8.chr7              113469064 303 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=98568.000000
s hg38.chr15_KI270850v1_alt    134335 47 +    430880 AGCCTCTCCTCCTGTCTCCTGTTCAGGAGACTCAACATCTGATTGTT
s gorGor5.CYUI01015946v1        57061 47 -    378907 AGCGTCTCCTCCTGTCTCCTGTTCAGGAGACTCAACATCTGATTGTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25649768 47 - 121039945 AGCCTCTGCTTTTGTTCCTTGCTCAGGAGACTCAAGGCCTGATTGTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106538799 47 - 171882078 AGCCTCTCCTCCTGTCTCCTGTTCAGGAGACTCAACATCTGATTGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4010522 47 +   4820037 AGTCTCTCCTTTTGTTCCTTGCTCAGGAGAGTCAAGACCTGATTTTT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9929615 47 +  10730278 AGTCTCTCCTTTTGTTCCTTGCTCAGGAGAGTCAAGACCTGATTTTT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3125117 47 +  24206276 ATCCTCTCCTTCTGTCTCCTGTTCAGGAGATTCAGCATCTGATTGTT
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5826573 47 -  61074082 AGCCGCTGCTCCTGCTCCCGGTTCAGGCGACTCAAACCTTCGTTGTC
i canFam3.chr9              T 317 C 0
s dasNov3.JH564958             404226 47 -    584178 AGCCGCTGCTCCTGCTCCTGATTCAGGCGACTCAGGCCCTCGTTGTC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3101292 100 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23090583 41913 -  99763055 I
e colAng1.NW_012116021v1       263476 149 +   4111199 I
e manLeu1.NW_012105520v1      1052478 212 +   1458659 I
e rheMac8.chr7              113469064 303 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=95114.000000
s hg38.chr15_KI270850v1_alt    134382 40 +    430880 TTCCACCTCAGCCTGGAGCTGTCTTCCCACACTCTCTAGC
s gorGor5.CYUI01015946v1        57108 40 -    378907 TTCCACCTCAGCCTGGAGCTGTCTTCCCACACTCTCCAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25649815 40 - 121039945 TTTCACCTGGGATTGGAGCTTTCCCTCCAGTACCTCCACC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106538846 40 - 171882078 TTCCACCTCGGCCTGGAGCTGTCTTCCCAGACTCTCCAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4010569 40 +   4820037 TTCCATCTGGGATTGGAGCTTTCCCTCCAGACTTTCGACC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9929662 40 +  10730278 TTCCATCTGGGATTGGAGCTTTCCCTCCAGACTTTCCACC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3125164 40 +  24206276 TTCCACCTCGGCCTGGAGCTGTCTTCCCAGACTCTCCAGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1052690 40 +   1458659 TTCCACCTGGGCTTGGAGCTGTCCTGCCAGACTCTCCAGC
i manLeu1.NW_012105520v1    I 212 C 0
s canFam3.chr9                5826620 40 -  61074082 TTTCACTTGGGCCTGCACCTGCTCGGCCAGGCTCTCCAGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             404273 40 -    584178 ATGTACCTGAGCCTGCAGTCGCTCTGCTAGGTTCTCTAGC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3101292 100 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23090583 41913 -  99763055 I
e colAng1.NW_012116021v1       263476 149 +   4111199 I
e rheMac8.chr7              113469064 303 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=162125.000000
s hg38.chr15_KI270850v1_alt    134422 48 +    430880 TCCTTCCTTAGGTGGTTGGTCTCATCTTGTA------GCTGCTCTACCTTAGAT
s panPan2.chr15              23132496 48 -  99763055 TCCTTCCTCAGCTGTTTGGCCTCATCTTGTA------GCTGCTCCAACTCAGAG
i panPan2.chr15             I 41913 C 0
s gorGor5.CYUI01015946v1        57148 48 -    378907 TCCTTCCTTAGGTGGTTGGTCTCATCTTGTA------GCTGCTCCACCTTAGAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25649855 48 - 121039945 TCCTTCCTCAGCTGTTTGGCCTCATCCTGTA------GCTGCTCCACCACAGAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106538886 48 - 171882078 TCCTTCCTTAGGTGTTTGTTCTCATCTTGTA------GCTGCTCCACCTCAGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4010609 48 +   4820037 TCCTTCCTCAGGTGTTTGGCCTCACCTTGTA------GATGTTCCACCTCAGAG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9929702 48 +  10730278 TCCTTCCTCAGGTGTTTGGCCTCATCTTGTA------GCTGTTCCACCTCAGAG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3125204 48 +  24206276 TCCTTCCTTAGGTGTTTGGTCTCATCTTGTA------GCTGCTCCACCTCAGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1052730 51 +   1458659 TCCTTTCACAGGTGCTTGACCTCAGCTTATA---GCTGCTGCTCCACCTCTGAG
i manLeu1.NW_012105520v1    C 0 C 0
s canFam3.chr9                5826660 54 -  61074082 TCCTTCTGTAGTTGTTCAGTCTCGGCGTGCAGCCGCTGCTGCTCCTCCTCCAAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             404313 51 -    584178 TCCTTCTGCAGCTTTTCAGCCTCTGCTTGCA---GCTGCTGTTCCACCTCAGAG
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3101292 100 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263476 149 +   4111199 I
e rheMac8.chr7              113469064 303 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=78036.000000
s hg38.chr15_KI270850v1_alt    134470 25 +    430880 GGCCCTGCTGGGGGCTCTGGGGCCA
s panPan2.chr15              23132544 25 -  99763055 GTCCCTGCTGGGGGTGCCGGGGACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        57196 25 -    378907 GGCCCTGCTGGGGGCTCTGGGGCCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25649903 25 - 121039945 GTCACTGCTGGGGGCGCCAGGGATG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106538934 25 - 171882078 GGCCCTGCTGGGGGATCTGGGGCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4010657 25 +   4820037 GTCCCTGCTGGGTCCACCGGGGATG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9929750 25 +  10730278 GTCCCTGCTGGGTCCACCAGGGATG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3125252 25 +  24206276 GGCCCTGCTGGGGGATCTGAGGCCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1052781 25 +   1458659 GGTCCTGCTGGGGGCTCCAGGTGTA
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1      3101392 25 +   3745603 GGCCCTGCTGGGGTCTTCGGGATTG
i aotNan1.NW_018511953v1    I 100 C 0
s canFam3.chr9                5826714 25 -  61074082 GGCCTGGCTGGGGGCTCCTGGGCTG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             404364 25 -    584178 TACCCAGCCGGGGGCTCCTGGGGTG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263476 149 +   4111199 I
e rheMac8.chr7              113469064 303 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=231488.000000
s hg38.chr15_KI270850v1_alt    134495 45 +    430880 GGGGTTCAGCT-----------GAGAAAGCAAGCAGAGAATAAGGGCCTCTGGATT-------
s panPan2.chr15              23132569 45 -  99763055 GGGGCTCAGCT-----------GAGAAATGAAGCAGGCAATAAGAGCCTCTGGATT-------
i panPan2.chr15             C 0 I 24
s gorGor5.CYUI01015946v1        57221 45 -    378907 GGGGTTCAGCT-----------GAGAAAGGAAGCAGACAATAAGGACCTCTGGATT-------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25649928 45 - 121039945 GGGGCTCAGCT-----------GAGAAACGAAGCAGACAACAAGGGCCTCTGGATT-------
i nomLeu3.chr6              C 0 I 25
s macFas5.chr7              106538959 45 - 171882078 GGGGTTCAGCT-----------GAGAAAGGAAGCAGACAATAAGGTTCTCTGGATT-------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4010682 45 +   4820037 GGGGCTCAGCT-----------GAGAAATGAAGCAGACAATAAGGGCCTCTGGATT-------
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9929775 45 +  10730278 GGGGCTCAGCT-----------GAGAAATGAAACAGACAATAAGGGCCTCTGGATT-------
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3125277 45 +  24206276 GGGGTTCAGCT-----------GAGAAAGGAAGCAGACCATAAGGGTCTCTGGATT-------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1052806 45 +   1458659 GGGGTTCAGCT-----------TAGAAAGGAAGCAGACAATAAGGGCCTCTGGATT-------
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       263625 45 +   4111199 GGGGTTCAGCT-----------AAAAAAGGAAGCAGACAATAAGCGCCTCTGGATT-------
i colAng1.NW_012116021v1    I 149 C 0
s aotNan1.NW_018511953v1      3101417 45 +   3745603 GGGGTTCAGCT-----------GAGAAAGGAAGCAGACAATAAGGGCCTCTGGATT-------
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5826739 56 -  61074082 GGGGCACCACTGTGGGGAGCAGGGGGAGGGGGACACACGCTAGGGGCCTCTCACCT-------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             404389 52 -    584178 GGGGTACAGCT-----------GAGAAAGGAAGCACATAATAAAGGCTTCTCACTTCTGTGTT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e rheMac8.chr7              113469064 303 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=6600.000000
s hg38.chr15_KI270850v1_alt    134540 1 +    430880 C
s gorGor5.CYUI01015946v1        57266 1 -    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25649998 1 - 121039945 C
i nomLeu3.chr6              I 25 C 0
s macFas5.chr7              106539004 1 - 171882078 C
i macFas5.chr7              C 0 I 4
s macNem1.NW_012011533v1      4010727 1 +   4820037 C
i macNem1.NW_012011533v1    C 0 I 47
s cerAty1.NW_011999477v1      9929820 1 +  10730278 C
i cerAty1.NW_011999477v1    C 0 I 47
s chlSab2.chr29               3125322 1 +  24206276 C
i chlSab2.chr29             C 0 I 2
s manLeu1.NW_012105520v1      1052851 1 +   1458659 C
i manLeu1.NW_012105520v1    C 0 I 2
s colAng1.NW_012116021v1       263670 1 +   4111199 C
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1      3101462 1 +   3745603 C
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5826795 1 -  61074082 C
i canFam3.chr9              C 0 I 7
s dasNov3.JH564958             404441 1 -    584178 C
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23132614 24 -  99763055 I
e rheMac8.chr7              113469064 303 - 169600520 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=14035.000000
s hg38.chr15_KI270850v1_alt    134541 9 +    430880 TCAAAAAAA
s gorGor5.CYUI01015946v1        57267 9 -    378907 TCAAAAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25649999 9 - 121039945 TCAAAAAAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106539009 9 - 171882078 aaaaaaaaa
i macFas5.chr7              I 4 C 0
s chlSab2.chr29               3125325 5 +  24206276 ----AAAAA
i chlSab2.chr29             I 2 C 0
s colAng1.NW_012116021v1       263671 9 +   4111199 TCaaaaaag
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1      3101463 9 +   3745603 TCAATAAAA
i aotNan1.NW_018511953v1    C 0 I 6
s canFam3.chr9                5826803 9 -  61074082 TCAAAAAAG
i canFam3.chr9              I 7 C 0
s dasNov3.JH564958             404442 8 -    584178 TCTAAAAA-
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23132614 24 -  99763055 I
e manLeu1.NW_012105520v1      1052852 2 +   1458659 I
e cerAty1.NW_011999477v1      9929821 47 +  10730278 I
e macNem1.NW_012011533v1      4010728 47 +   4820037 I
e rheMac8.chr7              113469064 303 - 169600520 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=12076.000000
s hg38.chr15_KI270850v1_alt    134550 8 +    430880 AAAAAAAA
s panPan2.chr15              23132638 8 -  99763055 AAAAAAAA
i panPan2.chr15             I 24 C 0
s gorGor5.CYUI01015946v1        57276 5 -    378907 ---AAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25650008 2 - 121039945 ------CA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106539018 8 - 171882078 aaaaaaaa
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3125330 8 +  24206276 AAAAAAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1052854 5 +   1458659 ---AAAAA
i manLeu1.NW_012105520v1    I 2 C 0
s colAng1.NW_012116021v1       263680 8 +   4111199 aaaaaaaa
i colAng1.NW_012116021v1    C 0 I 46
s aotNan1.NW_018511953v1      3101478 8 +   3745603 AAAACAAA
i aotNan1.NW_018511953v1    I 6 I 1
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             404450 0 -    584178 C
e canFam3.chr9                5826812 0 -  61074082 C
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e cerAty1.NW_011999477v1      9929821 47 +  10730278 I
e macNem1.NW_012011533v1      4010728 47 +   4820037 I
e rheMac8.chr7              113469064 303 - 169600520 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=53773.000000
s hg38.chr15_KI270850v1_alt    134558 23 +    430880 ATC-CTCCCTTTGGTGCACAGCTC
s panPan2.chr15              23132646 23 -  99763055 ACC-CTCCTCTTGATGCACAGCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        57281 23 -    378907 ATC-CTCCCTTTGGTGGACAGCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25650010 23 - 121039945 ACC-CTCCTCTTGATGCACAGCTC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106539026 23 - 171882078 aTC-CTCCCATTGGTGCAGAGCTC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3125338 23 +  24206276 ATT-CTCCCATTGGTGCAGAGCTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1052859 21 +   1458659 ACC-CTCCTCTTGGTGCACAGC--
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1      3101487 21 +   3745603 ACCACTCTTCTTGGTGCACAG---
i aotNan1.NW_018511953v1    I 1 C 0
s canFam3.chr9                5826812 22 -  61074082 -CC-CTCTTCTTGATCCACAGCTC
i canFam3.chr9              C 0 I 10
s dasNov3.JH564958             404450 22 -    584178 -CT-CTCTTCTTGGTCCACAGCTC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       263688 46 +   4111199 I
e cerAty1.NW_011999477v1      9929821 47 +  10730278 I
e macNem1.NW_012011533v1      4010728 47 +   4820037 I
e rheMac8.chr7              113469064 303 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=408586.000000
s hg38.chr15_KI270850v1_alt    134581  99 +    430880 ----------CTCCTCTCAGGCTTCCCA--AACTTGGCCTCACTGCTAATGACTCCTCACACCC-GGATGGTAGACAATCTTCCAAGT---------------------------------------------------------CACTTTCAGATAG-----------------------AGAGCACTGTG
s panPan2.chr15              23132669  96 -  99763055 ----------CTC---TCAGGCTTCCCATGGCCATGGCCTCACTGCTAATGATTCCTCACACCC-G-ATGGTAGCCAGT-TTCCAAGC---------------------------------------------------------CACTTTCACATAG-----------------------AGAGCACTGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        57304  99 -    378907 ----------CTCCTCTCAGGCTTCCCA--AACTTGGCCTCACTGCTAATGACTCCTCACACTC-GGATGGCAGCCAATCTTCCAAGT---------------------------------------------------------CACTTTCAGATAG-----------------------AGAGCACTGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25650033  94 - 121039945 ----------CTC---TCAGGGTTCCCA--AACTTGGCCTCACTGCTAATGATGCGTCGCACCC-G-ATGGTAGCCAAT-TTCCAAGC---------------------------------------------------------CACTTTCACATAG-----------------------AGAGCACTGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113469367  96 - 169600520 ----------CTCCTCTCCGGCTTCCCA--AACTTGGCCTCACTGCTAATGATTCCTCGAACCC-A-ATGGAAGCCAAT-TTCCAAGC---------------------------------------------------------CATGTCAG-ATAG-----------------------AGAGCACTGTG
i rheMac8.chr7              I 303 C 0
s macFas5.chr7              106539049  98 - 171882078 ----------CTCCTCTCAGGCTTCCCA--AACTTGGCCTCACTGCTAAGGATTCCTCGCACCC-AGGTGGTAGCCAATCTTCCAAGC---------------------------------------------------------CACTTTCA-ATGG-----------------------AGAGCACTGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4010775  96 +   4820037 ----------CTCCTCTCAGGCTTCCCA--AACTTGGCCTCACTGCTAATAATTCCTCGAACCC-A-ATGGAAGCCAAT-TTCCAAGC---------------------------------------------------------CATGTCAG-ATAG-----------------------AGAACACTGTG
i macNem1.NW_012011533v1    I 47 C 0
s cerAty1.NW_011999477v1      9929868  96 +  10730278 ----------CTCCTCTCAGGCTTCCCA--AACTCGGCCTCCCTGCTAATGATTCCTCGCACCC-A-ATGGAAGCCAAT-TTCCAAGC---------------------------------------------------------CATGTCAG-ATAG-----------------------AGAGCACTGTG
i cerAty1.NW_011999477v1    I 47 C 0
s chlSab2.chr29               3125361  98 +  24206276 ----------TTCCTCTCAGGCTTCCCA--AACTTGGCCTCACTGCTAAGGATTCCTCGCACCCAG-ATGGTAGCCAGTCTTCCAAGC---------------------------------------------------------CACTTTCA-ATGG-----------------------AGAGCACTGTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1052880  97 +   1458659 -----------TCCTCTCAGGCTCTGCA--AACTTGGCCTCCCTGCTAATGATTCCTTGTACTC-G-ATGGTAGCCAATCTTCCAAGC---------------------------------------------------------CCCTTTCAGATAG-----------------------AGAGCACTGTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       263734  99 +   4111199 ----------CTCCTCTCAGGCTTCCCA--CACTTGGCCTCCCTGCTGATGATTCCTCGCACCC-GGATGGTAGTCAATCTTCCAAGC---------------------------------------------------------CACTTTCAGACAG-----------------------AGAGCACTGTG
i colAng1.NW_012116021v1    I 46 C 0
s aotNan1.NW_018511953v1      3101508  96 +   3745603 ----------CTCCTCTGAAGCTCCCCA--AACCTGGCCTCACTGCTAATGATTCCTCGCACCC-A-AAGGTAGCCATC-TTCCAAG----------------------------------------------------------CACTTTCAGATAG-----------------------AGAGCACTGTG
i aotNan1.NW_018511953v1    C 0 I 102
s canFam3.chr9                5826844 116 -  61074082 ----------CTCCTCGC-----CCCAA--ACCTTGGCTTCCTGGCTCACAATCCCTCACCCTC-AGGGGATATGCACTCTTTCAAGA---------------------------------------------------------CACTTTTGAAAAGAGTTTTTAATATTTTTATGCTC-AGGACAATTCG
i canFam3.chr9              I 10 I 1
s dasNov3.JH564958             404472 170 -    584178 CTAATTCATGCTCCTCAC-----CCCAA--GTCCTGCTTTCCTTGCTAATAATTCCTCACACCC-ATATGATGTTCAATATTCCAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGTTCTTTT--ATAG------------ttctatactcaagacaattctg
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=466887.000000
s hg38.chr15_KI270850v1_alt    134680  99 +    430880 GGTGGCTGACAATGGGcactcc--tccctctttactgatggggacactgaggctcatggagatgacaagact-------------------------tgtcctcccctggc-aCAGACCTCTTTCCC
s panPan2.chr15              23132765  98 -  99763055 GGTGGCTGACAACGAGCACTCC--TCCCTTTTTGCTTATGGGGACCCTGAGGCT-ATGGAGATGACAAAACT-------------------------TGCCATCTGCTGGC-ACAGACCTCTTTCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        57403  99 -    378907 GGTGGCTGACAATGGGCACTCc--tccctctttactgatggggacactgaggctcatggagatgacaacact-------------------------tgccgtctcctggc-aCAGACCTCTTTCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25650127  99 - 121039945 GGTGGCTGACAATGGGCactcc--ttcctctttgctgatggggaccctgaggcttatggagatgacaaaact-------------------------tgccATCTCCTGGC-ACAGACCTCTTTCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113469463  99 - 169600520 GGTGGCTGACAATGGGCactcc--ttcctcttgcctgatggggaccctgaggctcatggagatgacaagact-------------------------tgccAGCTGCTGGC-ACAGACCTCTTTCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106539147  99 - 171882078 GGTGGCTGACAATGGGCACTCC--TCCCTCTTTGCTGATGGGGACACCAAGGCTCAAGCAGATGACAAGGCT-------------------------TGCAGTCTCCTGGC-ACAGACCTCTCTCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4010871  99 +   4820037 GGTGGCTGACAATGGGCACTCC--TTCCTCTTGCCTGACGGGGACCCTGAGGCTCATGGAGATGACAAGACT-------------------------TGCCAGCTGCTGGC-ACAGACCTCTTTCCT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9929964  98 +  10730278 GGTGGCTGACAAC-GGCACTCC--TCGCTCTTAGCTGATGGGGACCCTGAGGCTCATGGAGATGACAAGACT-------------------------TGCCAGCTGCTGGC-ACAGACCTCTTTCCC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3125459  99 +  24206276 GGTGGCTGACAATGGGCACTCC--TCCCTCTTTGCTGATGGGGACACCAAGGCTCAAGCAGATGACAAGGCT-------------------------TGCAGTCTCCTGGC-ACAGACCTCTCTCCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1052977  99 +   1458659 GGTGGCTGACAATAGGCACTCC--TCCCTCTTTGTTGTTGGGGACACTGAGGCTCATGGAGATGACAAGACT-------------------------TGCCATCTCCTGGC-ACAGACCTCTTTCCC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       263833  99 +   4111199 GGTGGCTGACAACTGGCACTCc--tccttctttgctgatggggacactgaggctcacagagattgcaagact-------------------------tgcTGTCTCCTGCC-GCTGACCTCTTTCCC
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr9                5826961  60 -  61074082 AGTGGTTGCCAGCGGGCACACT--GCCC---------------------------------------AACCT-------------------------GGCCAACTCCTAGT-ACGGACCTCTTTCCC
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958             404642 127 -    584178 gatggttgacagtgggtactccatcccctttttgcagatggagacaatgaaactcagagaaattataagacttgccaaaggtcacatagtaagtcagtgccaactcctggtaacagaactcTTTCCC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3101604 102 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=262951.000000
s hg38.chr15_KI270850v1_alt    134779 42 +    430880 -TCTGCCTCAAAGCCCTTCCATCCACCCACCTCCCTGGGGCAT
s panPan2.chr15              23132863 42 -  99763055 -TCTGCCTCAAAGCCCTTCCATCCACCCACCTCCCTGGGGCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        57502 42 -    378907 -TCTGCCTCAAAGCCCTTCCATCCACCCACCTCCCTGGGGCAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25650226 42 - 121039945 -TCTGCCTCAAAGCCCTTCCATCCACTCACCTCCCTGGAGCAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113469562 42 - 169600520 -TCTGCCTCAAAGCCCTTCCATCCACCCACCTCCCTGGGGCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106539246 42 - 171882078 -TCTGCCTCAAAGCCCTTCCATCCACCCACCTCCCTGGGGCAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4010970 42 +   4820037 -TCTGCCTCAAAGCCCTTCCATCCACCCACCTCCCTGGGGCAC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9930062 42 +  10730278 -TCTGCCTCAAAGCCCTTCCATCCACCCACCTGCCTGGGGCAC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3125558 42 +  24206276 -TCTGCCTCAAAGCCCTTCCATCCACCCACCTCCCTGGGGCAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1053076 42 +   1458659 -TGTGCCTCAAAGCCCTTCCATCCACCCACCTCCCTCGGGCAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       263932 42 +   4111199 -TCTGCCTCAAAGCCCTTCCATGTGCCCACCTCCCTGTGGCAT
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1      3101706 41 +   3745603 -TCTGCCTCAAAGACCTTCCAGCCACCCACCT-CCTGGGGCAT
i aotNan1.NW_018511953v1    I 102 I 1463
s canFam3.chr9                5827021 42 -  61074082 -TGGGCCACAGTCCCCTTCCATCCACCCACATCCTTAGGGCAT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             404769 31 -    584178 CTTGGCCATAA-------TCA-----CCACCTCTCACAGACAT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=193142.000000
s hg38.chr15_KI270850v1_alt    134821 35 +    430880 TCTAAGTCACCCCCA-CAGCCCTCTAATGCCAGTCC
s panPan2.chr15              23132905 35 -  99763055 TCTAAGCCACCCCCA-CAGACCTCTGATGCCAGTCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        57544 35 -    378907 TCTAAGTCACCCCCA-CAGCCCTCTGATGCCAGTCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25650268 35 - 121039945 TCTAAGCCACCCCCA-CAGACCTCTGATGCCAGTCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113469604 34 - 169600520 TCTAAGCCA-CCCCA-CAGCCCTCTGATGCCAGTCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106539288 35 - 171882078 TCTAAGCCACCCCCA-CAGCCCTCTGATGCCGGTCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4011012 34 +   4820037 TCTAAGCCA-CCCCA-CAGCCCTCTGATGCCAGTCC
i macNem1.NW_012011533v1    C 0 I 2843
s cerAty1.NW_011999477v1      9930104 34 +  10730278 TCTAAGCCA-CCCCA-CAGCCCTCTGATGCCAGTCC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3125600 35 +  24206276 TCTAAGCCACCCCCA-CAGCCCTGTGATGCCGGTCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1053118 35 +   1458659 TCTAAGCGACCCCCA-CAGCCCTCCAATGCCAGTCC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       263974 35 +   4111199 TCTAAGCCACCCCCA-CAGCCCTCTGATGCCGGTCC
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr9                5827063 36 -  61074082 TTGAAGGCATCCTCACCAGCCCTCTGGCACCAATCC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             404800 36 -    584178 TCTAAGCCATCCTCACCAGCCCTCTGACACCACTTC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3101747 1463 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=599100.000000
s hg38.chr15_KI270850v1_alt    134856 157 +    430880 AGCTGCCAGGTCATGCCAGCCCCATCTTACCCGTCTGGTTTTTGAGTTTGAACAAGCTCCTCCCAAGCTTCTGTACCAGATGTATCTCATGCTTCTTCTCCTCCTTAGATGTGCGAACCTGCCCAAAGCAAAGGGGGAAAA--------GGGCCCTGGAG-GGAGG
s panPan2.chr15              23132940 155 -  99763055 TGCTCCCAGGTCACACCAGTCCCATCTTACCCATCTGGTTTTGCAGTTCAGAAAAGCTTCTCTCCAGCTCCTGTATCCGATGTATGTCACGCTTCTTCTCTTCCTTCAATGTGCGAGCCTGCCGAAAGCACAGGGG--AAA--------GGGCCCTGGAG-AGAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        57579 145 -    378907 TTCTCCCAGGTCATGCCAGCCCCATCTTACCCGTCTGGTTTTG------------GTACCCCCCAAGCTTCTGTACCCGATGTATCTCATGCTTCTTCTCCTCCTTTGATGTGCGAACCTGCCCAAAGCACAGGGGGGAGA--------GGGCCCTGGAG-AGAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25650303 155 - 121039945 TGCTCTCAGGTCACACCAGCCCCATCTTACCCATCCGGTTTTGGAATTCCAACAAGCTCCTCTCCAGCTCCTGTATCCGATGTATGTCGCGCTTCTTCTCCTCCTTCAATAGGAGAGTCTGCCCAAATCACAGGGG--AAA--------GGGCTCTGGAG-AGAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113469638 156 - 169600520 TGCTCCCACGTCACACCAGCCCCATCTTACCCATCTGGTGTTTGAGTTCGGACAAGCTCCTCTCCAGCTCCTGTATCTGATGTATGTCACGCTTCTTCTCCTCCTTCAATGCGTGAGCCTGCCCAAAGCACAGGGG-GAAA--------GGGCCCTGGAG-AGAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106539323 156 - 171882078 TGCTCCCAGGTCACGCCAGCCCCATCTTACCCCTCTGGTGTTTGAGTTTGAACAAGCTCCTCCCAAGCTTCTGTACCCGATGTATCTCACGCTTCTTCTCCTCCTTCAATGTGTGAACCTGCCCAAAGCACAGGGC-GAAA--------GGGCCCTGGTG-ATAGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9930138 156 +  10730278 TGCTCCCACGTCACACCAGCCGCATCTTACTCATCTGGTGTTTGAGTTCGGACAAGCTCCTCTCCAGCTGCTGTATCCGATGTATGTCACGCTTCTTCTCCTCCTTCAATGCATGAGCCTGCCCAAAGCACAGGGA-GAAA--------GGGCCCTGGAG-AGAGG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3125635 156 +  24206276 TGCTCCCAGGTCACGCCAGCCCCATCTTACCCCTCTGGTGTTTGAGTTTGAAGAAGCTCCTGCCAAGCTTCTGTACCCGATGTATCTCACGCTGCTGCTCCTCCTTCAATGTGCGAACCTGCCCAAAGCACAGGGC-GAAA--------GGGCCCTGGTG-ATAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1053153 157 +   1458659 TGCTTTGAGGTCACCCCAGCCCCAGCTCACCCATCTGGTTCTTCAGTTTGGTCAAGCTTGTCTCCAGCTCCTGTACCTGATGCAGGTCATGCTTCTTCTCCTCCTTCAATGTGCAAACCTGCCCAAAGCACAGGGG-GAAA--------GGGCCCTGGAGAAGAGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       264009 154 +   4111199 TGCTTCCAGGTCACCCCAACCCCAGCTCACCCATCTGGTTCTTCAGTTCGGCCAAGCTTGTCTCCAGCTTCTGTACCTGATGCA-CTCATGCTTTTTCTCCTCCTTCAATGTGCGAACCTGCCCGAAGCACAGGG--GAAA--------GGGCCCTGGAG-AGAGG
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr9                5827099 155 -  61074082 TGCTCCCAGATC-CTCCTGCCTCAGCTTACCTATCTGGTTCTTCAGTTCAGCCAAGTTGGCCTCCAACTCCTGCACCTGACTCATGCTGTGCTCCTTCTCTTCCCTCAATCTGTGCATCTGCCCAAATCACAGGGG-GGAT--------GGGTACATGGG-TGGGG
i canFam3.chr9              C 0 I 4004
s dasNov3.JH564958             404836 164 -    584178 TGCTCTCAGATTACTCCAGACCCAGCATACCTGTCTCATTCTTCAGTTTAGCCAAACTGGTCTCCAGTTCCTGCACCTGACACATGCTATGCTCCTTCTCCTCCCTCAGTGTTTGCATCTGTCCAAAGCACAGGGA-GAAGGAATATATGGATATTGAGG-AAAGG
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3101747 1463 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e macNem1.NW_012011533v1      4011046 2843 +   4820037 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=13200.000000
s hg38.chr15_KI270850v1_alt    135013 2 +    430880 GG
s panPan2.chr15              23133095 2 -  99763055 GG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        57724 2 -    378907 GG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25650458 2 - 121039945 GG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113469794 2 - 169600520 GG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106539479 2 - 171882078 GG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9930294 2 +  10730278 GG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3125791 2 +  24206276 GG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1053310 2 +   1458659 GG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       264163 2 +   4111199 GG
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr9                5831258 2 -  61074082 GG
i canFam3.chr9              I 4004 C 0
s dasNov3.JH564958             405000 2 -    584178 GG
i dasNov3.JH564958          C 0 I 5287
e aotNan1.NW_018511953v1      3101747 1463 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e macNem1.NW_012011533v1      4011046 2843 +   4820037 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=2670.000000
s hg38.chr15_KI270850v1_alt    135015 4 +    430880 CTGG
s panPan2.chr15              23133097 4 -  99763055 CTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        57726 4 -    378907 CTGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25650460 4 - 121039945 CTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113469796 4 - 169600520 CTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106539481 3 - 171882078 CTG-
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9930296 4 +  10730278 CTGG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3125793 3 +  24206276 CTG-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1053312 4 +   1458659 CTGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       264165 4 +   4111199 CTGG
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr9                5831260 2 -  61074082 AT--
i canFam3.chr9              C 0 C 0
e aotNan1.NW_018511953v1      3101747 1463 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             405002 5287 -    584178 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e macNem1.NW_012011533v1      4011046 2843 +   4820037 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=3276.000000
s hg38.chr15_KI270850v1_alt    135019 1 +    430880 T
s panPan2.chr15              23133101 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        57730 1 -    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25650464 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113469800 1 - 169600520 T
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9930300 1 +  10730278 T
i cerAty1.NW_011999477v1    C 0 C 0
s manLeu1.NW_012105520v1      1053316 1 +   1458659 T
i manLeu1.NW_012105520v1    C 0 I 3929
s colAng1.NW_012116021v1       264169 1 +   4111199 T
i colAng1.NW_012116021v1    C 0 C 0
s dasNov3.JH564958             410289 1 -    584178 T
i dasNov3.JH564958          I 5287 C 0
e aotNan1.NW_018511953v1      3101747 1463 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr9                5831262 0 -  61074082 C
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e chlSab2.chr29               3125796 0 +  24206276 C
e macNem1.NW_012011533v1      4011046 2843 +   4820037 I
e macFas5.chr7              106539484 0 - 171882078 C
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=1757.000000
s hg38.chr15_KI270850v1_alt    135020 1 +    430880 G
s panPan2.chr15              23133102 1 -  99763055 G
i panPan2.chr15             C 0 I 2470
s gorGor5.CYUI01015946v1        57731 1 -    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25650465 1 - 121039945 G
i nomLeu3.chr6              C 0 I 2432
s rheMac8.chr7              113469801 1 - 169600520 G
i rheMac8.chr7              C 0 I 2467
s cerAty1.NW_011999477v1      9930301 1 +  10730278 G
i cerAty1.NW_011999477v1    C 0 I 2452
s colAng1.NW_012116021v1       264170 1 +   4111199 G
i colAng1.NW_012116021v1    C 0 I 3181
s canFam3.chr9                5831262 1 -  61074082 A
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             410290 1 -    584178 A
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3101747 1463 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e chlSab2.chr29               3125796 0 +  24206276 C
e macNem1.NW_012011533v1      4011046 2843 +   4820037 I
e macFas5.chr7              106539484 0 - 171882078 C
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=17305.000000
s hg38.chr15_KI270850v1_alt    135021 10 +    430880 AACGTCCAGA
s gorGor5.CYUI01015946v1        57732 10 -    378907 AACCTCTAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25652898 10 - 121039945 AACCTCTAGA
i nomLeu3.chr6              I 2432 C 0
s macFas5.chr7              106539484 10 - 171882078 AACCTCTAGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3125796 10 +  24206276 AACCTCTAGA
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5831263 10 -  61074082 AACCTCCAGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             410291 10 -    584178 AACCTCTAGA
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3101747 1463 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23133103 2470 -  99763055 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e cerAty1.NW_011999477v1      9930302 2452 +  10730278 I
e macNem1.NW_012011533v1      4011046 2843 +   4820037 I
e rheMac8.chr7              113469802 2467 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=18701.000000
s hg38.chr15_KI270850v1_alt    135031 9 +    430880 GACAGAGTT
s gorGor5.CYUI01015946v1        57742 9 -    378907 GACAGAGTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25652908 9 - 121039945 GAGGGAGTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113472269 9 - 169600520 GACGGAGTC
i rheMac8.chr7              I 2467 C 0
s macFas5.chr7              106539494 9 - 171882078 GACAGAGTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9932754 9 +  10730278 GACGGAGTC
i cerAty1.NW_011999477v1    I 2452 C 0
s chlSab2.chr29               3125806 9 +  24206276 GACAGAGTT
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5831273 9 -  61074082 AACAGGAGT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             410301 9 -    584178 AACGGAGTC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3101747 1463 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23133103 2470 -  99763055 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e macNem1.NW_012011533v1      4011046 2843 +   4820037 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=6570.000000
s hg38.chr15_KI270850v1_alt    135040 2 +    430880 TG
s gorGor5.CYUI01015946v1        57751 2 -    378907 TG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25652917 2 - 121039945 TC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113472278 2 - 169600520 TG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106539503 2 - 171882078 TG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4013889 2 +   4820037 TG
i macNem1.NW_012011533v1    I 2843 C 0
s cerAty1.NW_011999477v1      9932763 2 +  10730278 TG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3125815 2 +  24206276 TG
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5831282 2 -  61074082 TG
i canFam3.chr9              C 0 I 3
s dasNov3.JH564958             410310 2 -    584178 TG
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3101747 1463 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23133103 2470 -  99763055 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=734572.000000
s hg38.chr15_KI270850v1_alt    135042 248 +    430880 ----AGAAAG-GCCCACCCCCCTTCTGCCAG----TTTGTGATTTAGAAACGTGcattcattcaacaaacatttactgagc---------------atgtac---aggccaggtacagttcttcatagcagagatataaa--acagcaaaggacagacaggagcccttgg--ccctgaggtttccattctag-gggCCTTTAAATCTCTgactttcagagctaaccaagacctt---tgatac-------tctct-acctcctccagaaacacgagcataaagaggagaga
s panPan2.chr15              23135573 241 -  99763055 ----AGAAAG-GCCCACCC---TTCTGCCTG----CTTGTGATTTAGAAAGGTGCCttcattccacaaacagttactgagc---------------acatac---aggacagttatggttcttcacagcaga--tatagg--atggaaaaggacagacaggagcccttgg--ccctgaggtttccattctag-gggCCTTTAaatctcagactttcagagctaacagagacctt---tgatgc-------ttt---acctcctccagaaatatgagcccaaggaggagagg
i panPan2.chr15             I 2470 C 0
s gorGor5.CYUI01015946v1        57753 248 -    378907 ----AGAAAG-TCCCACCTCCCTTCTGCCAG----CTTGTGATTTAGAAAGGTGcattcattcaacaaacatttactgagc---------------atgtac---aggccaggaacagatcttcatagcagagatataag--acagcaaaggacagacaggagcccttgg--ccctgaggtttccattcta--gGGCCTTTAAATCTCTgactttcagagctaaccgagacctt---tgatac-------tctctaacctcctccagaaacacgagcctaaggaggagaga
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               25652919 241 - 121039945 ----AGGAAG-ACCCACCC---TTCTGCCAG----CTTGTGATTTAGAAAGGTGCCttcattcaacaaacatttactgagc---------------acatac---gggccaggtatggttcttcacagcaga--tatagg--atggaaaaggacagacaggagcccttgg--ccctgagctttccattctag-gggCCTTTAaatctcagactctcagagctaacagagacctt---tgatgc-------tct---acctcctccagaaacacgagcccaaggagaacagg
i nomLeu3.chr6              C 0 N 0
s rheMac8.chr7              113472280 241 - 169600520 ----AGAAAG-GCCCACCC---TCCTGCCAG----CTTGTGATTGAGAAAGGTGTGttcattcaacaaacatttactgagc---------------acgtac---gagccaggtacagttcttcacagcaga--tataga--atggaaaaggacagacaggagcccttgg--ccctcaggtttacattctag-GAGCCTTTAaatctcagactttcagagctaaccgagacctt---cactgc-------tct---acctccttcggaaacaccagcgcaaggaggagagg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106539505 245 - 171882078 ----AGGAAG-GCCCCCCC--GTCCTGCCAG----CTTGTGATTTAGAAAGGTGcgttcattcaacaaacatgtgctgagc---------------acctac---aggccaggtgtggttcttcacagcgga--gatagaagacagaaaaggacagacaggagcccttgg--ccctgaggtttccattctag-gggCCTTTAAATCTCGGACTCCCAGAGCGAACAGAGACCTT-GATACT-C-------TCT---ACCTCCTCCAGAAACACGAGCCCAAGGAGGAGAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4013891 241 +   4820037 ----AGAAAG-GCCCACCC---TCCTGCCAG----CTTGTGATTGAGAAAGGTGcgttcattcaacaaacatttactgagc---------------acgtac---gagccaggtacaattcttcacagcaga--tataga--atggaaaaggacagacaggagcccttgg--ccctcaggtttacattctag-GAGCCTTTAaatctcagactctcagagctaaccgagacctt---cactgc-------tct---acctccttcagaaacaccagtgcaaggaggagagg
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9932765 241 +  10730278 ----AGAAAG-GCCCATCC---TCCTGCCAG----CTTGTGATTGAGAAAGGTGcgttcattcaacaaacatttactgagc---------------acatac---gagccaggtacagttcttcacagcaga--tataga--atggaaaaggacagacaggagcccttgg--ccctcaggtttacattctag-GAGCCTTTAAATCTCAGACTCTCAGAGCTAACCGAGACCTT---CACTGC-------TCT---ACCTCCTTCGGAAACACCAACGCAAGGAGGAGAGG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3125817 246 +  24206276 ----AGAAAG-GCCCCCCC--ATTCTGCCAG----CTTGTGATTTAGAAAGGTGcgttcattcaacaaacatctgctgagc---------------acctac---aggccaggtatggttcttcacagcaga--gacagaagacagaaaagaacagacaggagcccttgg--ccctgaggtttccattctag-gggCCTTTAAATCTCGGACTCCCAGAGCTAACAGAGACCTTTGATACT-C-------TCT---ACCTCCTCCAGAAACACGAGCCCAAGGAGGAGAGA
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5831287 216 -  61074082 ----AGCAAGAGACTACCC---TTCTGGTAG----CTCGTGATTTGGAAGGGTGCTttcattcaacaagtatttactgagcaccctgggcctaagtacccac---aggccaggttctgttcttaatagcagggatacagg--aatgagaaggac-----------------------------------------------------CTgattctctgagctaaaggggacctt---ggacacctctaattct---acctcctcaggagactgaagcccagagaggaaagg
i canFam3.chr9              I 3 C 0
s dasNov3.JH564958             410312 248 -    584178 AAAAGGGAAA-GACAACCC---ACCTGCCAGCTCACTCACGATTTGAAAGGGCGcattcattcagcaaagatttactgagc---------------atatactatgggctgggtactattcttactagcagggacagagg--aatgcaaaggatagacaagatccccacattccctaa------cattctaACAGACCTTTCAGTCTTTGCTTTTTAgagctcaaagataccgt---aa---t-------tct---actccttcaggcaactgaaggccagtgaagagaag
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3101747 1463 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=763867.000000
s hg38.chr15_KI270850v1_alt    135290 230 +    430880 tggcttgtccagactcaaa-----aagcaaattagggactgaggcagggcagaaatat-gga-cccctgacaaccagtcAGGCTAGTGCTTCC-CAGAGAGGTGACAACCCCAGGGCATGTGTGGCAA-GGACTAGAGCAGGGGTGTCTGGAGAAGAGAGAGTCAGCAAAGAGGGCAGTG-CAG-AAGACCCATGCTGCATGTTCTGTGCTCTGGGGTCCCTCCAGGTGAGACCTGGGTGC
s panPan2.chr15              23135814 226 -  99763055 tggcttttccagactcaaa-------gcaaattagggaccgagtcagggcagaaatac-ggggcccctgacaaccagtcAGGCTAGTGCTTCC-CTGAGAGGTGACAACCCCAGGGCATGTGTGGCAA-GGATTGGAGTGGGGGT--CTGGAGAAGAGAG--TCGGCAAAGAGGGCAGTGACAG-AAGAGCCATGCTGCATGCTCCTTGCTCTGGGGTCCCTCCAGGTGAGGCCTGGGTGC
i panPan2.chr15             C 0 I 1
s gorGor5.CYUI01015946v1        58001 227 -    378907 tggcttgtccagactcaaa-----aagcaaattagggactgaggcagggcagaaatac-agg-cccctgacaaccagtcAGGCTAGTGCTTCC-CGGAGAGGCGACAAACCCAGGGCATGTGTGGCAA-GGACTAGAGCAGGGGTGTCTGGAGAAGAGAG--TCAGCAAAGAGGGCAGTG-CAG-AAGAGCCATGCTGCATGTTCTGTGCTCT-GGGTCCCTCCAGGTGAGGCCTGGGTGC
i gorGor5.CYUI01015946v1    C 0 I 1
s nomLeu3.chr6              101765929 230 + 121039945 TGGCTGGTCCAGACTCAAA-----AAGCAAATTAGGGACTGAGGCAGGGCAGAAATTC-GGG-CCCCTGACAACCAGTCAGGCTAGTGCTTCC-CTGAGAGGCGACAACCCCAGGGCATGTGTGGCAA-GGACTAGAGCAGGGGTGTCTGGAGAAGAGACAGTCAGCAAAGAGGGCAGTG-CGG-AAGAGCCATGCTGCATGTTCTGTGCTCTGGGGTCCCTCCAGGTGAGACCTGGGTGC
i nomLeu3.chr6              N 0 I 1
s rheMac8.chr7              113472521 232 - 169600520 tggcttgtccagattcaaa-----gagcaaattagggactgagtcatggcagaaatacaggg-accctgacAAACCATCAGGCTAGTGCTTCC-CTGAGAGGTGACAACCCCAGGGCGTGTGTGGCAA-GGACCCGAGCAGGGGTGTCTGGAGAAGAGAGAGTCGGCAAAGGAGGCAGTGACAG-AAGAGCCATGCTGCATGCTTCTTGCTCTGGGGTCCCTCCAGGTAAGGCCTGGGTGC
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              106539750 225 - 171882078 AGGCTTGTCCAGACTCAAA------AGCAAATTAGGGACTGAGTCAGGACAGAAATAC-GGG-ACCCTGACAAA----CAGGCTAGTGCTTCC-CTGAGAGGGAAGAACCCCAGGGCGTGTGTGGCAA-GGACTCGAGCAGGGGTGTCTGGAGAAGAGAGAGTCAGCAAAGAGGGCAGTG-CAG-AAGAGCCATGCTGCACGTTCTGTGCTCTGGGGTCCATCCAGGTGAGGCCTGGGTGC
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011533v1      4014132 232 +   4820037 tggcttgtccagactcaaa-----gagcaaattagggactgagtcatggcagaaatacaggg-accctgacAAACTATCAGGCTAGTGCTTCC-TGGAGAGGTGACAACCCCAGGGCGTGTGTGGCAA-GGACCCGAGCAGGGGTGTCTGGAGAAGAGAGAGTCGGCAAAGGGGGCAGTGACAG-AAGAGCCATGCTGCATGCTCCTTGCTCTGGGGTCCCTCCAGGTGAGGCCTGGGTGC
i macNem1.NW_012011533v1    C 0 I 1
s cerAty1.NW_011999477v1      9933006 232 +  10730278 TGGCTTGTCCGGACTCAAA-----GAGCAAATTAGGGATTGAGTCATGGCAGAAATACCGGG-ACCCTGACAAACCATCAGGCTAGTGCTTCC-CTGAGAGGTGACAACCCCAGGGCGTGTGTGGCAA-GGACCTGAGCAGGGGTGTCTGGAGAAGAGAGAGTCGGCAAAGAGGGCAGTGACAG-AAGAGCCATGCTGCATGCTCCTTGCTCTGGGGTCCCTCCAGGTGAGGCCTGGGTGC
i cerAty1.NW_011999477v1    C 0 I 1502
s chlSab2.chr29               3126063 223 +  24206276 TGGCTTGTCCAGACTCAAA-----AAGCAAATTAGGGACTGAGTCAGGATAGAAATAC-GGG-TCC--GACAAACAGTCAGGCTAGTGCTTTC-CTGAGAGGCAACAACCGCAGAGAGTGTGTGGCAA-GAACTCGAGT-GGAGTGTCTGGAGAAGAGAGA----GCAGAGAGAGCAGTG-CAG-AAGAGCCATGCTGCACGGTCTGTGTTCTGGGGTCCATCCAGGTGAGGCCTGCGTGC
i chlSab2.chr29             C 0 I 1
s canFam3.chr9                5831503 214 -  61074082 tgactcatccaagttcaaa-gatggagcaaattaggggttgggtcagggcaggagcac-----acc---------agccaagccagtgcttcc-tcCAGAGGCTACAGCCCTGGGGCAAGTATGGAAA-GGACTCAAGCAGGGGTGTCCGGAGAACAGA-AGGAGGCAAAGAAGGCAGCCACAG--AGAGCCATGCCGCA-------TGCTCTGGGGTCCCTCCACCTGAGACTCAAACCC
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958             410560 236 -    584178 tgacttgtccaaagtgaaaccaagcaacaaattaggcactaagtcagggctgagacacaggg-ctcctgacaaccagGCAGGCTAGGGCTTCTATTGAGAGGCCACAGCGCCAGGGCAA----GACAGTGGGTCAGGAGAGCAGTGCCACTGGAAAAGACAGTGGGTCAGGAGAGCAGCAAGAGAAAGCACCAGGCTGCGTGCTCAGTGCTCTGGGGTCCCTCCAGCTGAGACGTAGGCCC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3101747 1463 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=169845.000000
s hg38.chr15_KI270850v1_alt    135520 54 +    430880 CCAGCTCCCCATTTGCCCTTGGCATCAGGGGCCCTTAGCTCCTTTCTTCAGGGC
s panPan2.chr15              23136041 54 -  99763055 CCAGCTCCCCATTTGTCCTTGGCACCAGGGGCCCCCAGCTCCTTTCTTCAGGGC
i panPan2.chr15             I 1 C 0
s gorGor5.CYUI01015946v1        58229 53 -    378907 CCAGCTCCCCATTGGTCCTTGGCATCAGGGGCCCCTAGCCCCTTTCTTCAGGG-
i gorGor5.CYUI01015946v1    I 1 C 0
s nomLeu3.chr6              101766160 54 + 121039945 CCAGCTCCCCATTTGCCCTTGGCATCAGGGGCCCCTAGCCCCTTTCTTCAGGGC
i nomLeu3.chr6              I 1 C 0
s rheMac8.chr7              113472754 53 - 169600520 CCAGCTCCCCATTTGCCATTGGCACCAGGGGACCC-AGCCCCTTTCTTCAGAGC
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              106539976 53 - 171882078 CCAGCTCCCCATTTTCCCATGGCACCAGGGGCCCC-AGCCCCTTTCCTCAGGGC
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011533v1      4014365 53 +   4820037 CCAGCTCCCCATTTGCCATTGGCACCAGGGGACCC-AGCCCCTTTCTTCAGAGC
i macNem1.NW_012011533v1    I 1 C 0
s chlSab2.chr29               3126287 54 +  24206276 CCAGCTCCCCATTTTCCCATGGCACCAGGGGCCCCTAGCCCCTTTACTCAGGGC
i chlSab2.chr29             I 1 C 0
s canFam3.chr9                5831718 54 -  61074082 CCGACACCCCATTCTCCCTTAGCACCAGGGTCCCCCAGCCCCTTTCTTCAGAGC
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958             410796 54 -    584178 CCGGCACTCCACTCTCCCTTGGTACCAGGGACCCCCAGCCCCTTTCTTCAGAGC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3101747 1463 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e cerAty1.NW_011999477v1      9933238 1502 +  10730278 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=252290.000000
s hg38.chr15_KI270850v1_alt    135574 77 +    430880 CCCAAGA-------GGAA----ACTGGAGTCCAGGATTGACCAGCTGTAATCAGGGGACCCCACTGGACTCTTACCAGTGAATTGATG
s panPan2.chr15              23136095 76 -  99763055 CCCAAGG-------GGAA-----CTAAAGCCCAGGATTTGCAGCGTGGAATCACGGGACCCCACTGGACTCTTATCAATGATTCTATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        58282 77 -    378907 CCCAAGA-------GGAA----ACTGGAGTCCAGGATTGACCGGCTGGAAACAGGGGACCCCACTGGACTCTTACCAGTGAATTGATG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101766214 77 + 121039945 CCCAAGC-------GGAA----ACTGGAGTCCAGGATTGACAGGCTGGAATCAGGGGACCCCACTGGACTCTGACCAGTGAGTTGCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113472807 88 - 169600520 CCCAAGGATTGGCAGGAATTCCACTAAAGCCCAGGATTGGCAGTGTGGAATCACAGGACCCCACTGGACTCTTACCAGTGATTCTATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106540029 75 - 171882078 CCCAAGG-------GGAA----AC--GAGTCCAGGATTGGCAGCGTGGAATCAGAGGACGCCACTGGACTCTTCCCAGTGAATGGATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4014418 77 +   4820037 CCCAAGG-------GGAA----ACTAAAGCCCAGGATTGGCAGTGTGGAATCACGGGACCCCACTGGACTCTTACCAGTGATTCTATG
i macNem1.NW_012011533v1    C 0 C 0
s chlSab2.chr29               3126341 75 +  24206276 CCCAAGG-------GGAA----AT--GAATACAGGACTGGCAGCGTGGAATCAGAGGATGCCACTGGACTCTTCCCAGTGAATTGATG
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3103210 75 +   3745603 CCCAAGG-------GGAA----ACTGGAGCCCAGGATTG-CAGCGTGGAATCA-GGGACCCCACTGGACTCTTACCAATAAGTTGATG
i aotNan1.NW_018511953v1    I 1463 I 113
s canFam3.chr9                5831772 77 -  61074082 CCCAGGG-------AAAA----ACTGGAGCCCCAGATTGGCAGTGTGGAATCAGGGGACCCCACTGGACTCTTACCAATTCCTCTATC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             410850 77 -    584178 CCCAAGG-------GGAA----ATTGGAGCCCAGGATTGGCAGCATGGACTCAGGGGACCCCACTGGACTCTTACCAATTCCTCTATC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e cerAty1.NW_011999477v1      9933238 1502 +  10730278 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=364935.000000
s hg38.chr15_KI270850v1_alt    135651 121 +    430880 TTTTCAGTGAGTTGACTGATTATTGCGGAGC-TTGAATCCAGGGCCACTGCTAGTTCTTGGTACTGGCTCTGAGGTGCATGCAGA----------GAGAAGGAGTTGGAGGAAGATTGTGGGGAGGGGTAGA
s panPan2.chr15              23136171 121 -  99763055 TTTTCATTTAGTTGATTGACTGTCATGGAGC-TTGAGTCCAGGGCTACTTCCAGTTCTTGGTACCGGCTCTGAGGCGCATGCAGA----------GAGGAGGAGTTGGAGGAGGATTGTGGGGAGAGGTAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        58359 121 -    378907 TTTTCAGTGAGTTGACTGATTATTGCGGAGC-TTGAATCCAGGGCCACTGCTAGTTCTTGGTACTGGCTCTGAGGTGCATGCAGA----------GAGAAGGAGTTGGAGGAAGATTGTGGGGAGGGGTAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101766291 121 + 121039945 TTTTCACCAAGTTGACCGATTATTGCGGAGC-TTGATTCCAGGGCTACTGGTAGTTCTTGATACTGGCTCTGAGGTGCATGCAGA----------GAGGAGGAGTTGGAGGAAGATTGTGGGGAGGGGTAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113472895 120 - 169600520 TTTTCATAGAGTTGATTGATTGTTGTGGAGC-TTGAGTCCAGGGCTACTTCCAGTTCTTGGTTTCGGCTCTGAGGTGCATGCAGA----------GAGGAGGAGTTGGA-GAGGATTATGGGAAGAGGTAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106540104 122 - 171882078 TTTCCACTGAGTTGACTGATTATTGTGGAGCTTTGAGTCCGGGGCTCCTGCTAGTTCTTGGTACTGGCTCTGAGGTGCATGCAGA----------GAGGAGGAGTTGGAGGAGGATTGCGGGGAGGGGTAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4014495 120 +   4820037 TTTTCATAGAGTTGATTGATTGTTGCGGAGC-TTGAGTCCAGGGCTACTTCCAGTTCTTGGTTTCGGCTCTGAGGTGCATGCAGA----------GAGGAGGAGTTGGA-GAGGATTATGGGAAGAGGTAGA
i macNem1.NW_012011533v1    C 0 C 0
s chlSab2.chr29               3126416 122 +  24206276 TTTTCACTGGGTTGACTGATTATTGTGGAGCTTTGAGTCCGGGGCTCCTGCTAGTTCTTGGTACTGGCTCTGAGGTGCATGCAGA----------GAGGAGGAGTTGGAGGAGGATTGTGGGGAGCGGTAGA
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5831849 129 -  61074082 TTGCTACTGAGTTGTTTGTTTGTTAGATTGC-TGGAGTCCAGGGCTAGTGATAGCTCTTGGTACCGGCTCTGAGGCGCATGCAgaggaggaggaggaggaggagTTGGACGAGGGTT--GGGGAGAGGTAGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             410927 123 -    584178 TTGTTAATGAGTTGATTGTTTGTTAGATTGC-TGGAATCCAGGGCTACTGATAGCTCTTGGTATCGGCTCTGAGGCGCATGCAGA-------GAGGAGGAGGAGTGGGAAGAGAGTTG-GGGGAGAGGTAGA
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3103285 113 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e cerAty1.NW_011999477v1      9933238 1502 +  10730278 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=572464.000000
s hg38.chr15_KI270850v1_alt    135772 163 +    430880 GAGAATAATCATTAGGGCTGG---TGGGGGTGTG------TGGGCTGCCTCAGCTGGCAGAGGGGCAACAAGCCCCTGCTGTGGGAGGAGGTTGGAGGGCTGGCCTGC-AGGGTCACTGCACCTCGGCCCAGGGCCTCTTACCTCCAGATCCTGCAGGGTAGTAGAGGATGCA
s panPan2.chr15              23136292 169 -  99763055 AAGAACAATCATTAGGGCTGG---GGTGTGTGTGGGCTGTCGGGCTGTCTCAGCTGGCAGAGGGGCACCCGGCCCCTGCTGTGAGAGGAGGTTGGAGGGCTGGCCTGC-AGGGTCACTGCACCTTGACCCAGGGCCTCTTACCTCCAGATCCTTCAGGGTAACAGATGATGCA
i panPan2.chr15             C 0 I 1268
s gorGor5.CYUI01015946v1        58480 163 -    378907 GAAAACAATCATTAGGGCTGG---TGGGGGTGTG------TGGGCTGCCTCAGCTGGCAGAGGGGCAACAAGCCCCTGCTGTGGGAGGAGGTTGGAGGGCTGGCCTGC-AGGGTCACTGCACCTCAGCCAAGGGCCTCTTACCTCCGGATCCTCCAGGGTAGCAGAGGATGCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101766412 163 + 121039945 CGGTACAATCATTAGGGCTGG---GGGCGGGGTG------TGGGCTGTCTCAGCTGGCAGAGGGGCAACAAGCCCCTGCTGTGGGAGGAGGTTGGAGGGCTGGCCTGC-AGGGTCACTGCACCTCGGCCCAGGGCCTCTTACCTCCAGATCCTTCAGGGTAGCAGATGACACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113473015 161 - 169600520 GAGAACAATCATTAGGGCT-----GGGGTGTGTG------TGGGCTGTCTCAGCTGGCAGAGGGGCACCCAGCCCCCACTGTGAGAGGAGGTTGGAGGGCTGGCCTGC-AGGGTCACTGCACCTTGGCTGAGGGCCTCTTACCTCCAGGTCCTTCAGGGTAGCAGATGATGCA
i rheMac8.chr7              C 0 I 1277
s macFas5.chr7              106540226 153 - 171882078 GAGAAGAGTCATTAGGGCTGGGGAGGGGTGTGTC------TGGGCTGTCTCAGCTGGCAGAGGGGCAACCAGCCCCTGCTGTGGGAGGAGGT-------------TGC-AGGGTCACTGAACCTCGGCCCAGGGCCTCTTACCTCTAGATCTTTCAGGGTAGAAGATGACACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4014615 161 +   4820037 GAGAACAATCATTAGGGCT-----GGGGTGTGTG------TGGGCTGTCTCAGCTGGCAGAGGGGCACCCAGCCCCCACTGTGAGAGGAGGTTGGAGGGCTGGCCTGC-AGGGTCACTGCACCTTGGCTCAGGGCCTCTTACCTCCAGGTCCTTCAGGGTAGCAGATGATGCA
i macNem1.NW_012011533v1    C 0 M 2459
s chlSab2.chr29               3126538 165 +  24206276 GAGAACAGTCATTGGGGCTGGGGAGGGGTGTGTC------TGGGCTGTCTCAGCTGGCAGAGGGGCAACCAGCCCCTGCTGTGGGAGGACGTTGGAGGGCTAGCCTGC-AGGGTCACTGAACCTCGGCCCAGGG-ATCTTACCTCTAGGTCTTTCAGGGTAGTAGATGACACG
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3103398 161 +   3745603 GAGAACAATCATTAGGGTT-----GGGGTGTGTG------GGGGCTGCCTCATCTGGCAGAGGGGCACCCAGCCACCACTGTGGGAGGAGGGTGGAGGGCTGGCCTGC-AGGGTCACTGTACCTCAGCTCAGGGCCTCTTACCTCTGGATCTTTCAAGGTGACACATGGCGCT
i aotNan1.NW_018511953v1    I 113 C 0
s canFam3.chr9                5831978 150 -  61074082 GAGAGCAGTCATTAGGGTT--------------G------GGGGCTGTCTGGGCTGGCAGCGGGGCACCCAGCCCCCGCTGTGGGAGGAGAT--GGGGGCTGGCCTGC-AGGGTCCTGAGACCATGGTCTAGTGCCACTTACCTCTAGATCCTTTATGTTAGCAGAAGATGCC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             411050 162 -    584178 GAGAGCAATCGTTAAGGTTGGG--GGGGTGTGTC------TGGGCTGTCTCAACTGGCAGTGGGGCACCCAGCCCCCACTGTGGGAGGAGGTGGGGGGACTGGCCTGCAAGGGTCACCAGGCCACAGTCCAGGGCCACTTACCTCCAGATGCTTCATGTTAACAGATGTT---
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e cerAty1.NW_011999477v1      9933238 1502 +  10730278 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=304260.000000
s hg38.chr15_KI270850v1_alt    135935 200 +    430880 CGGCCCTCCCCGTAGACACCTGTTGCTGACTGCAAGAGAT---GAGAGTG--CACATGGAGATG--TTC--TGTCCCCCCTCACTGTCTAAGCCCTCTGACTTCCTTTCTTCCCCCATCAACTGGCAAAAGCTTCTTTTCTGCCTATCTTGGACCCTTTTCCCCATAACTCCTTTGTGCCAACTTCTCTCGTGGTTCTTATCTCCCCAC
s gorGor5.CYUI01015946v1        58643 200 -    378907 CGGCCCTCCCCGTAGATACCTGTTGCTGACTGCAGGAGAT---GAGAGTG--CACATGGAGATG--TTC--TGTCCCCCCTCACTGTCTAAGCCCTCTGACTTCCTTTCTTCCCCCATCAACTGGCAAAAGCTTCTTTTCTGCCTATCTTGGACCCTTTTTCCCATAACTCCTTTGTGCCAACTTCTCTCGTGGTTCTTATCTCCCCAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101766575 199 + 121039945 GGGCCCTCTCCATAGATACCTGTTGCTGACTGCAAGAGAT---GAGAGTG--CACATGGAGATG--TTC--TGTCCCCCCTCACTGTCTAAGCCCTCTGACTTCCTTTCTT-CCCTATCAACTGGCAAAAGCTTCTTTTCTGCCTATCTTGGACCCTTTGTCCCATAACTCCTTTGTGCCAACTTCTCTCATGGTTCTTATCTCCCCAC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106540379 198 - 171882078 GGGCCCTCCCCGTAGACACCTGTTGCTGACTACAAGAGAT---GAGAGTG--CACATGGAGATG--TTC--TGT-CCCCCTCAGTGTCTAAGCCCTCTGACTTCCTTTCTT-CTCCATCAACTGACAAAAGTTTCTTTTCTGCCTATCTTGCACCCTTTGTCCCATAACTCCTTTGTGCCAACGTCTCTCATGGTTTTTATCTCCCCAC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3126703 198 +  24206276 GGGCCCTCCCCGTAGACACCTGTTGCTGACTACAAGAGAT---GAGAGGG--CACATGGAGATG--TTC--TGT-CCCCCTCAGTGTCTAAGCCCTCTCACTTCCTTTCTT-CCCCATCAACTGGCAAACATTTCTTTTCTACCTATCTTGGACCAGTTGTCCCATAACTCGTTTGTGGCAACTTCTCTCATGGTTTTTATCACCCCAT
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3103559 196 +   3745603 GGGCCCTCCTTGTGACCACCTGCTGCTGACTACAAGAGAT---GAGAGTG--CACATGGAGATG--TTC--TGT-CCCCCTCAGTGTCCAAG-CCTCTGACTTCCTTTCTT-CCCCATCAGCTGGCAGCATTTTCTGTTCTGCCTCTCTCAGACCCTTTGTCCCATAACTGCTTTGTGCCAGCTCCTCTCATGGTTCTTATCT-CCCAC
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5832128 179 -  61074082 AGGCCCTCCCCATTGATGTAGGATGAAGACTAGGAGACAC---GAAAGGGCTCACATGGAGGCGCACTC--TGC-CCGCCCCAGTACCTAAGCCCTCTGACTCCTCATCCT-GCCCATCAGCTGCAAA------CTTTTCTGCCTAACT--AACCC------------CTCCTTTGTGCCA---CTCCTCCTGGTTCTTAGCCCCCCGT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             411212 200 -    584178 AGGCCCTCACCATTGAAGTAGGATGAAGACTAGAAGAGATTGAAAGATCT--CACATGGAGATG--CTCTTTGT-CCCCAAAAGCACCTGAGCTGTTTGACTTCCTTTTTT-CCCCACCAACTGGCAAGAGTTTATTTTATGCCAAATTTGGGCCTATCTTCTTACAA-TCCCTTATGCCACCTTTC--CGTGGTTCTTATCGTCCTAT
i dasNov3.JH564958          C 0 I 3819
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23136461 1268 -  99763055 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e cerAty1.NW_011999477v1      9933238 1502 +  10730278 I
e macNem1.NW_012011533v1      4014776 2459 +   4820037 M
e rheMac8.chr7              113473176 1277 - 169600520 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=8219.000000
s hg38.chr15_KI270850v1_alt    136135 5 +    430880 CATCC
s gorGor5.CYUI01015946v1        58843 5 -    378907 CATCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101766774 5 + 121039945 CATCC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106540577 5 - 171882078 GATCC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3126901 5 +  24206276 GATCC
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3103755 5 +   3745603 CATCC
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5832307 5 -  61074082 CATCA
i canFam3.chr9              C 0 I 4616
s dasNov3.JH564958             415231 5 -    584178 catca
i dasNov3.JH564958          I 3819 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23136461 1268 -  99763055 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e cerAty1.NW_011999477v1      9933238 1502 +  10730278 I
e macNem1.NW_012011533v1      4014776 2459 +   4820037 M
e rheMac8.chr7              113473176 1277 - 169600520 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=53148.000000
s hg38.chr15_KI270850v1_alt    136140 18 +    430880 CACCCTGGGGCCCTTTCA
s panPan2.chr15              23137729 18 -  99763055 caccCTGGGCCCCCTTCA
i panPan2.chr15             I 1268 C 0
s gorGor5.CYUI01015946v1        58848 18 -    378907 CACCCTGGGGCCCTTTCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101766779 18 + 121039945 CACTGTGGGGCCCTTTCA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106540582 18 - 171882078 CACCCTGGGGTCCTTTCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9934740 18 +  10730278 caccctgAGCCCCCTTCT
i cerAty1.NW_011999477v1    I 1502 C 0
s chlSab2.chr29               3126906 18 +  24206276 CACCCTGGGGCCCTTTCA
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3103760 18 +   3745603 CAGCCTGAGGCCCTTTCA
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5836928 18 -  61074082 CACCCTGGGTCTCTTTTG
i canFam3.chr9              I 4616 C 0
s dasNov3.JH564958             415236 18 -    584178 caccctgGGCTCTTTTGA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e macNem1.NW_012011533v1      4014776 2459 +   4820037 M
e rheMac8.chr7              113473176 1277 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=266355.000000
s hg38.chr15_KI270850v1_alt    136158 73 +    430880 GTGAC-TCCTAAAGGGACAGCCTGATGGCAAGTGGCTCTTCTCATTGGCCTGGCTTCCCCTTGAGACTGGGGAT
s panPan2.chr15              23137747 73 -  99763055 GTGAC-TCCTATAGGGACAGCCTGATGGCAAGTGGCTGTACTCATTGGCCCAGCTTCCCCTTGAGAATGCGGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        58866 73 -    378907 GTGAC-TCCTAAAGGGACAGCCTGATGGCAAGTGGCTCTTCTCATTGGCCTGGCTTCCCCTTGAGACTGGGGAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101766797 73 + 121039945 GTGAC-TCCTAAAGGGACAGCCTGATGGCAAGTGGCTCTTCTCATTGGTCTGGCTTCCCCTTGAGACTGGGGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113474453 73 - 169600520 gTGAC-TCCTAAAGGCACAGCTTGATAGCAAGTGGCTGTACTCATTGGCCCAGCTCCGCCTTGAGAATAGGGAT
i rheMac8.chr7              I 1277 I 17
s macFas5.chr7              106540600 73 - 171882078 GTAAC-TCCTAAAGGGACAGCCTGATGGCAAGTGGCTCTTCTCTTTGGTCTGGCTTCCCCTTGAGACTGGGGAT
i macFas5.chr7              C 0 I 1
s cerAty1.NW_011999477v1      9934758 73 +  10730278 GTGAC-TCCTAAAGGGACAGCTTGATAGCAAGTGGCTGTACTCATTGGCCCAGCTCCGCCTTGAGACTAGGGAT
i cerAty1.NW_011999477v1    C 0 I 17
s chlSab2.chr29               3126924 73 +  24206276 GTGAC-TCCTAAAGGGACAGCCTGATGGCAAGTGACTCTTCTCATTGGTCTGGCTTCCCCTTGAGACTGGGAAT
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3103778 73 +   3745603 GTGAC-TCCCAAAGGGACAGCCTGACAGCAAATGGCTGTTCTCATTGGGCTGGCTTCCCCTTGAGACTGGGGAT
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5836946 73 -  61074082 GTGCT-TCCTATAGGGACAGTGTGATGGCAGATGGCTATTCTCACTGCCTGGCTTCCCCCCTGAAGCCAGGGAT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             415254 69 -    584178 --GACTTCCTAAAGGGAGAAAATGATGGCAAGTGCCAGTTAGCA---GCTTGGCTTCTCCTTGAGGCTGGGAAT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e macNem1.NW_012011533v1      4014776 2459 +   4820037 M
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=1225.000000
s hg38.chr15_KI270850v1_alt    136231 1 +    430880 G
s panPan2.chr15              23137820 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        58939 1 -    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101766870 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29               3126997 1 +  24206276 G
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3103851 1 +   3745603 G
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5837019 1 -  61074082 G
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             415323 1 -    584178 G
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e cerAty1.NW_011999477v1      9934831 17 +  10730278 I
e macNem1.NW_012011533v1      4014776 2459 +   4820037 M
e macFas5.chr7              106540673 1 - 171882078 I
e rheMac8.chr7              113474526 17 - 169600520 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=494391.000000
s hg38.chr15_KI270850v1_alt    136232 194 +    430880 AGGAAAATCA----------------aacagca--------acgaccatttcctcagtgtcctgggtgtttgcagcaggccatgtactaa-ggatt---cacataaaagcaacaataacg---aatc------------------------------------------------------tcatttaaacttcacaaatggaagtcaaaaaata---------------------------------------------------------ccacctctatt---at-------acagatg-----tgaaaagagaggcccaaagacctcaagcaacttgccc---------------taaatca
s panPan2.chr15              23137821 194 -  99763055 AGGAAAATCA----------------AACAGCA--------ATGACCATTTCCTGGGTATCCTGGGTGTTTACAGCAGGCCACATACTAG-GGGTT---AACATAAAAACAACCATAAGG---Aatc------------------------------------------------------tcatttaaacttcacaaatggaagtcaaacaata---------------------------------------------------------ctccccctatt---tt-------acagatg-----tgaaaagagaggcccaaagagctcaagcagtttgccg---------------taaatca
i panPan2.chr15             C 0 I 8
s gorGor5.CYUI01015946v1        58940 193 -    378907 AGGAAAATCA----------------AACAGCA--------ATGaccattttctgggtgtcctgggtgtttgcagcaggccatgtactaa-ggatt---cacataaaagcaacaataaca---aatc------------------------------------------------------tgatttaaatttcacaaacggaagtcaaaaaata---------------------------------------------------------ccacctctatt---at-------acagatg-----tgaaaagagaggccaaaagacctcaag-aacttaccc---------------taaatca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101766871 197 + 121039945 AGGAAAATCA----------------aacagca--------acgaccatttcctgggtgtcctgggtgtttgcaacaggccatgtactaa-ggatt---cacataaaagcaacaataacg---aatc------------------------------------------------------tcatttaaacttcacaaatggaagtcaaaaaata---------------------------------------------------------ccacctctgttataat-------acagata-----tgaaaagagaggcccaaagacctcaagcaacttgccc---------------taaatca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113474543 197 - 169600520 AGGAAAATCA----------------AAGAGCA--------ATGGCCATTTCCTGGGTATGCTGGGTGTTCACAGCAGGACATGTACTAG-GGATT---AACATAAAAACAACAACAATATGGAata------------------------------------------------------tcatttaaacttcagaaatgaaaatcaaacaaca---------------------------------------------------------ctacccctatt---tt-------acagatg-----tgaaaagagaggcccaaagaactctagcaacttgcca---------------taaatca
i rheMac8.chr7              I 17 C 0
s macFas5.chr7              106540674 191 - 171882078 AGGAAAATCA----------------AACAGCA--------ATGACCATTTCCTCGGTGTCCTGGGTGTTTAAAGcaggccatgtactaa-ggatt---cacataaaagcgataaca------aatc------------------------------------------------------tcattacaacttcacaaatggaagtcaaaaaata---------------------------------------------------------ccacctctatt---at-------acagatg-----tgagaagagaggcctgaagacctcaagcaacttgccc---------------taaatca
i macFas5.chr7              I 1 C 0
s cerAty1.NW_011999477v1      9934848 197 +  10730278 AGGAAAATCA----------------AAGAGCA--------ATGGCCATTTCCTGGGTATCCTAGGTGTTCACAGCAGGACATGTACTAG-GGATT---AACATAAAAACAACAACAATATGGAata------------------------------------------------------tcatttaaacttcagaaattaaaatcaaacaaca---------------------------------------------------------ctatccctatt---tt-------acagatg-----tgaaaagagaggcccaaagaactctagcaatttgcca---------------taaatca
i cerAty1.NW_011999477v1    I 17 C 0
s chlSab2.chr29               3126998 194 +  24206276 AGAAAAATCA----------------AACTGCA--------GCGACCATTTCGTGGGTGTCCTGGGTATTTACAGCAGGCCATGTACTAA-GGATT---CTCATAAAAACAACAATAACA---Aatc------------------------------------------------------tcatttaaactttacaaatagatgtaaaaaaatc---------------------------------------------------------ccacctctatt---at-------acagatg-----tgaaaagagagacccgaagacctcaagcaacttgccc---------------taaatca
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3103852 197 +   3745603 AGGAAAACCA----------------AACAGCA--------AGGACCATTTCCTGGGTGCCCTGGGTGTTTACAGCGGGCCACGTACTAG-GGATT---GACAAAAAAGCAACAGCAATAACGAatc------------------------------------------------------tcatttcaccttcacaaatggaagtcagacaata---------------------------------------------------------ccatctctatt---tt-------acagatg-----tgaaaggagaggcccaaaaagctccagcaacttgccc---------------taaatca
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5837020 339 -  61074082 AGGAAAGTCACC------------AGGTCAGTATGTCAAATAGGACTA--CCCTTGA----CTGAATGCTTATCCCACACCAGGCCCTAAGGGATT---AATATAAAAACAACATCAATggggcatctggacagcttagttggttaagtgtccgactcctgagttcttccggctcaggtcatgatctcagagtcatgggatccagccagacatcaggctccgtgctcagcagggagtctgcttgaggattctctctccctcttcctttgcccctccccctgct---ctctctcaaataaataaacccttaaaagaaa---CAAAAAAAATCAACCATCTCATTCCAGTGTCACCAGTGTTAAGACA
i canFam3.chr9              C 0 I 4
s dasNov3.JH564958             415324 198 -    584178 AGCAAAATCACCTAGGCAATAGCTAAaatagga--------actaccatttactgaatgtttactctgtcc----cagaccctctactaa-ggactttatatataaatacag-----------aaac------------------------------------------------------tcctttaaacttcacaagtgtaaat---aaaaca---------------------------------------------------------ttatccctgtt---tt-------acagaca-----tgtaaacagaggcctaaagatcttaaacaatttctcc---------------aaaatca
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e macNem1.NW_012011533v1      4014776 2459 +   4820037 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=-9008.000000
s hg38.chr15_KI270850v1_alt    136426 29 +    430880 tatgctaa--tcaatCCCTAATCA-ATTCTTA
s gorGor5.CYUI01015946v1        59133 29 -    378907 tatgctaa--tcaatccctaatca-atcctta
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101767068 29 + 121039945 tatcctaa--tcaatccctaatca-atcctta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113474740  8 - 169600520 gatcc------------------------cta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106540865 29 - 171882078 tatcctaa--ttaatctctaatca-atcatta
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9935045  8 +  10730278 gatcc------------------------cta
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3127192 29 +  24206276 tatcctaa--ttaatccctaatca-atcatta
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3104049  8 +   3745603 tatcc------------------------cta
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5837363 32 -  61074082 TACCCCAACTTTATTGATGGGGCATATTCCCA
i canFam3.chr9              I 4 C 0
s dasNov3.JH564958             415522  8 -    584178 ------------------------taccccta
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23138015  8 -  99763055 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e macNem1.NW_012011533v1      4014776 2459 +   4820037 M
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=1305760.000000
s hg38.chr15_KI270850v1_alt    136455 390 +    430880 GCAGACGGAGAGGCAGGATTCAAATCCAGAATTCTTAACCAGTACCCAACAGT---CCATCTACAATCTTAACAATTACCCTCTACTG-CCCCTTGGGC-CCCCTGTCCCCAGGAGCCTGGCCCGCCGAGACTCACATCCCCAGGTGAGTGGTAACCACCAGAAGTGGCTGTGTCAGGGCTACTGCCATTG---ACTTTCTTTTTCCTGTTAGCTCCTGCTGGAATG-----------------------------CCAGGGCTCTTCCTCTGCCAATATGCTTTTAACTGTGGGAAAGAAGAGCAGTAACACTCATGAGaatgatcagcccctacagccacatcctcctttacagttttgacaaaatacccttata--taccatctgatgtaatgccaccaacaaccgtacaaggtGTTGTCACAATC
s panPan2.chr15              23138023 377 -  99763055 gaagatggagaggcaggattcaaacccagaattcttaaccagtacccagca--------------agcttaacaattaccctccactg-cccctTGGGC-CCCCTGTCCCCAGGAGCCAGGCCAGCCAAGACTCACATCCCCAGGTGAGTGGCAACCACCAGAAGTGGTTGTCTCAGGGCTACTGCCAGTT---TTTTTCTTTTTTGTCTTCGCTCCTGCTGGAACA-----------------------------CCAGGGCTGTTCCTCTGCTGATATTCTTTTAGCTGTGGGAAAGAAGAGCAGTAATACACATGAGAACTTCCAGCCTCTACAGCCACATTCTCCTTTACAGTTTTTGCAAAATACTCTTATA--AACTATCTGATTTAATGCCACCAACAAC--TACAAGGTGTTGTCACGATC
i panPan2.chr15             I 8 C 0
s gorGor5.CYUI01015946v1        59162 386 -    378907 gcagatagagaggcaggattcaaacccagaattcttaaccagtacccaacagt---ccatccacaatcttaacaattaccctctactg-cccctTGGGC-CCCCTGTCCCCAGGAGCCTGGCCCGCCGAGACTCACATCCCCAGGTGAGTGGTAACCACCAGAAGTGGCTGTGTCAGGGCTACTGCCATTG---ATTTTCTTTTTCCTGTTAGCTCCTTCTGGAATG-----------------------------CCAGGGCTCTTCCTCTGCCAATATTCTTTTAACTGTGGGAAAGAAGAGCAGTAACACTCATGAGAATGATCAGCCCCTACAGCCACATCCTCCTTTACAGTTTTGACAAAATACCCTTATA--TATCATCTGGTTTAATGCCACCAACAATTGGACAAGGTGTTGTCAC----
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101767097 390 + 121039945 gcagacggagaggcaggattcaaacccaggattcttaaccagtacccaacagt---ccatccacaatcttaacaattaccctctactg-cccctTGGGA-CCCCTGTCTCCAGGAGCCTGGCCAGCCAAGACTCACATCCCCAGGTGAGTGGTAACCACCAGATGTGGCTGTGTCAGGGCTACTGCCATTG---ATTTTCTTTTTCCTGTTAGCTCCTGCTGGAGTG-----------------------------CCAGGGCTCTTTCTCTGCCAATATTCTTTTAACTGTGGGAAAAAAGAGCAGTAACACTCATGAGAACTATCAGCCCCTACAGCCACATCCTCCTTTACAGTTTTGACAAAATACTCTTATA--CACCATCTGATTTAATGCCACCAACAACTGTACAAGGTGTTGTCACAATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113474748 379 - 169600520 gcgaatggagaggcaggattcaaacccagaattcttaaccagtacccagca--------------atcttaacaattaccctctactgcccccttgGGC-CCCCTGTCCCCAGGAGCCTGGCCAGCAAAGACTCACATCCCCAGGTAAGTGGCAACCACCAGAAGTGGTTGTCTCAGGGCTACTGCCAGTT---TTCTTCTTTTTTGTCTTCACTCCTGCTGGAACA-----------------------------CCACGGCTGTTCCTCTGCTGATATTCTTTTAGCTGTGAGAAAGAAGAGCAGTAATACTCATGAGAACTACCAGCCCCTACGGCCATATCCCCCTTTACAGTTTTT-CAAAATACTCTTATA--CACCATCTGACTTAATGCCACCAACAACTGTACAAGGTGTTTTCACAATC
i rheMac8.chr7              C 0 I 4
s macFas5.chr7              106540894 418 - 171882078 gcagatggagaggcaggattcaaacccagaattcttaaccagtacccaacagt---ccattcac-atcttaacaattatcctctactg-CCCCTTGGGC-CCCCTGTCCCCAGGAGCCTGGTCAGCCAAGACTCACATCCGCAGGTGAGCGGTGACCACCAGAAGCGGCAGTGTCAGGGCTACTGCCATTG---ATTTTCTTTTTCCTGTTAGCTCCTGCTGGAACGCCAGGGCTCTTCCTCTGCCAATATTCTTTCCAGGGCTCTTCCTCTGCCAATATTCTTTTAACTGTGGGAAAGAAGAGCAGTGACACTCATGAGAACTATCAGCCCCTACAGCCACACCCTCCTTCACAGTTTTGACAAAATACTCTTATA--CACCATCTGATTTAATGCCACCACCAACTGTACATGGTGTTGTCACAATC
i macFas5.chr7              C 0 I 16540
s cerAty1.NW_011999477v1      9935053 379 +  10730278 gccaacggagaggcaggattcaaacccagaattcttaagcagtacccagca--------------atcttaacaattaccctctactgcccccttGGGC-TCCCTGTCCCCAGGAGCCTGGCCAGCCAAGACTCACATCCCCAGGTGAGTGGCAACCACCAGAAGTGGTTGTCTCAGGGTTACTGCCAGTT---TTCTTCTTTTTTGTCTTCGCTCCTGCTGGAACA-----------------------------CCACGGCTGTTCCTCTGCTGATATTCTTTTAGCTGTGGGAAAGAAGAGCAGTAATACTCATGAGAACTACCAGCCCCTACGGCCACATCCCCCTTTACAGTTTTT-CAAAATACTCTTATA--CACCATCTGACTTCATGCCACCAACAACTGTACAAGGTGTTTTCACAATC
i cerAty1.NW_011999477v1    C 0 I 4
s chlSab2.chr29               3127221 390 +  24206276 gcagatggagaggcaggattcaaacccagaattcttaaccagtacccaacagt---ccatccacaatcttaacaattatcctctactg-CCCCTTGGGT-CCCCTGTCCCCAGGAGCCTGGCCAGCCAAGACTCACATCCCCAGGTGAGCGGTAACCACCAGAAGCGGCGGTGTCAGGGCTACTGCCATTG---ATTTTCTTTTTCCTGTTAGCTCCTGCTGGAACG-----------------------------CCAGGGCTCTTCCTCTGCCAATATTCTTTTAACTGTGGGAAGGAAGAGCAGTGACACTCATGAGAACTATCAGCCCCTACAGCCACATCCTCCTCTACAGTTTTGACAAAATACTCTTCTA--CACCATCTGATTTAATGCCGCCACCAACTGTACAAGGTGTTGTCACAATC
i chlSab2.chr29             C 0 I 4
s aotNan1.NW_018511953v1      3104057 390 +   3745603 gcagatggagaggcaggattcaaacccagaattcctaaccagtacccggaagt---tcttccacAATCTTAACAATGACCCTCTACTG-CCCCGTGGGC-CCCTTTTCCCCAGAAGCCTGGCCAGCCAAGACTCACATGGCACGGTGACTGGCAAGCATCAGAAGGAGCTATCTCACGGCTACTGTTGTTT---CTTTTATTTCATCTTCTCACTCGTGATGGAACA-----------------------------GCAGGGCTGTTTCTTTGTTGAAATTCTTTTAACTGTGGGAAAAAGCAGCAGTAATACTCATGAGAACTACGaacccctacagtcacaacctactttacagtttttacaaaataccgttata--caccatctgatttaatgccaccaacaactctataaggtGTTGTCACAATC
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5837395 374 -  61074082 GCAGAGGGAGAGGTAGGATTCAAATCC--------------GTACCTGACATC---TCCTCCACAGTATCAACCACCACCCTCTACTG-CCCCTCAAACACCCCTGGCCCCAGGAACCTGGCCAGCCAGTACTCACATCCTCAGGAGAGTGACAATCATTGGAAGTGGTAGTCTCAGGGCTACTGCCATTTTTAATCTTCCTTTTCTTCTTTGCTCCT------ACA-----------------------------CCAGGGCTGTTCTTCTGCTGATACTCCCTCAACTACAGAAAGGAAAATCAGTGGGGCTCATGAGaactataaacccctgtattcatgtccaactttgtagttt--acaatatactcccatactcgccatctgacttaatgccaccaacagccctacaaggtGTTGTAATTCTC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             415530 340 -    584178 gcagaggaaga---------caaagccagaattcttaaccagtacttgatactttctcttccacagtctaaaccagtaccctctactg-CACCTTCAGCATCCCGATCCCAGGGAGGCTGACCAGCCAAGACTCACATCCTCAGGCGAGTGG---CCACCAGAAGTTGGTATCTCCGGGCTACTGCTATTTTTGATCTTTCTTTTCTTTTTGGCTCCTGCAGGAACA-----------------------------CCAGGGCTGTTCCTCTGCTGAAATTCTCTTAACTGCAGAAAGGAAAAA----GACACTCATGAGAAGTCTAAGCCCCTA----------------------------------------TA--CGCCATCTGATTTAATGCCACCACCAACCCTACAA-GTGTTATAATTCTC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e macNem1.NW_012011533v1      4014776 2459 +   4820037 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=69045.000000
s hg38.chr15_KI270850v1_alt    136845 30 +    430880 A----GTGACT---GAGAGG----GATTCATATCATGGATA
s panPan2.chr15              23138400 34 -  99763055 ACTTAGTGACA---GAGAGG----GATGGATATTATAGCTA
i panPan2.chr15             C 0 I 13
s gorGor5.CYUI01015946v1        59548 28 -    378907 ------CGATT---GAGAGG----GATTGATATCATGGATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101767487 34 + 121039945 ATTTAGTGACT---GAGAGA----GATTGATACCATGGGTA
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr7              113475131 30 - 169600520 ----ACTGATT---GAGAGG----GATGGATATTATGGCTA
i rheMac8.chr7              I 4 C 0
s macFas5.chr7              106557852 30 - 171882078 ----AGTGACT---GAGAGG----GATTGATATCATGGCTA
i macFas5.chr7              I 16540 C 0
s cerAty1.NW_011999477v1      9935436 30 +  10730278 ----ACTGATT---GAGAGG----GATGGATATTATGGCTA
i cerAty1.NW_011999477v1    I 4 C 0
s chlSab2.chr29               3127615 30 +  24206276 ----AGTGACT---GAGAGG----GATTGATACCATGGATA
i chlSab2.chr29             I 4 C 0
s aotNan1.NW_018511953v1      3104447 34 +   3745603 ACTTAGTGACT---GAGAGG----GATTGATGTCATGGGGa
i aotNan1.NW_018511953v1    C 0 I 1
s canFam3.chr9                5837769 33 -  61074082 ----AGTGACTGCAGAAATA----GACTGATAACATGACTA
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958             415870 34 -    584178 ----ATTTTTA---AAAATGCCATGACATGTAACATGGCTT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e macNem1.NW_012011533v1      4014776 2459 +   4820037 M
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=14925.000000
s hg38.chr15_KI270850v1_alt    136875 19 +    430880 -Gaaaaa------------aaaaaaaaagaaa
s gorGor5.CYUI01015946v1        59576 14 -    378907 -Gaaaaa------------aaaaaaaa-----
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101767522 15 + 121039945 -GAAAAA------------AAAAAGAAA----
i nomLeu3.chr6              I 1 C 0
s rheMac8.chr7              113475161 15 - 169600520 -AAAAAA------------AGGGAGGGT----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106557882 27 - 171882078 -GAAAAAAACCAAAAAAACAAAAGAAAT----
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9935466 15 +  10730278 -AAAAAA------------AGGGAGGGT----
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3127645 15 +  24206276 -GAAaaa------------aataataat----
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3104482 15 +   3745603 -aaaaaa------------agaaagaaa----
i aotNan1.NW_018511953v1    I 1 I 14
s canFam3.chr9                5837803 15 -  61074082 -GAAAAG------------AAAAGGCAA----
i canFam3.chr9              I 1 I 8
s dasNov3.JH564958             415904 15 -    584178 TAAAAAA------------AAAAAAAA-----
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23138434 13 -  99763055 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e macNem1.NW_012011533v1      4014776 2459 +   4820037 M
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=165.000000
s hg38.chr15_KI270850v1_alt    136894 8 +    430880 gatcaaaa
s gorGor5.CYUI01015946v1        59590 4 -    378907 ----gaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101767537 4 + 121039945 ----GAAA
i nomLeu3.chr6              C 0 C 0
s canFam3.chr9                5837826 6 -  61074082 --TTTAAA
i canFam3.chr9              I 8 I 3
e aotNan1.NW_018511953v1      3104497 14 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             415919 0 -    584178 C
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23138434 13 -  99763055 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e chlSab2.chr29               3127660 0 +  24206276 C
e cerAty1.NW_011999477v1      9935481 0 +  10730278 C
e macNem1.NW_012011533v1      4014776 2459 +   4820037 M
e macFas5.chr7              106557909 0 - 171882078 C
e rheMac8.chr7              113475176 0 - 169600520 C
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=910.000000
s hg38.chr15_KI270850v1_alt    136902 1 +    430880 a
s gorGor5.CYUI01015946v1        59594 1 -    378907 a
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101767541 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s aotNan1.NW_018511953v1      3104511 1 +   3745603 a
i aotNan1.NW_018511953v1    I 14 C 0
s dasNov3.JH564958             415919 1 -    584178 A
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr9                5837832 3 -  61074082 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e panPan2.chr15              23138434 13 -  99763055 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e chlSab2.chr29               3127660 0 +  24206276 C
e cerAty1.NW_011999477v1      9935481 0 +  10730278 C
e macNem1.NW_012011533v1      4014776 2459 +   4820037 M
e macFas5.chr7              106557909 0 - 171882078 C
e rheMac8.chr7              113475176 0 - 169600520 C
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=738844.000000
s hg38.chr15_KI270850v1_alt    136903 244 +    430880 aGGCAATACTGGAACTTAAACTCAGTCCTCTGACTCCACGCTCTGGGGTTTTGCCATG-AATCAGCAGCTTCCAGGGACCAAAACCAGGGGCAGAGGTAGAAAAGCACACATTAAGCAGGCAGGAACTGTAGGCCGTGTGGTTTAG-AGTCATACATCCTCACAGGTCTGCTAGCGTGAAGAAGCGTACCAGTACCTCTCACACTTTCATATCAATGTGTCCTCATGGCAGAAGGCAG--------CTTTTCTA
s panPan2.chr15              23138447 244 -  99763055 GGGCAATAATGgaacttaaactcagtcttctgactccaagctctggggttttgccatg-aatcagcagctgccAGGGACCAAAACTAGAGGCAGAGGTAGAAAAGTAAACATTAAGTAGACAGGAACTGCACTCTGTGTGGGTTAC-AGTCATACATCCTCACATGTCTGTTAGTGTGAAGAAGTGCACCAGTACCTCTTAAACTTTTATATCAATGTGTCCTCATGGCAGAAGGCAG--------CTTTTTTG
i panPan2.chr15             I 13 C 0
s gorGor5.CYUI01015946v1        59595 244 -    378907 aGTCAAAACTGGAACTTAAACTCAGTCCTCTGCCTCCAAGCTCTGGGGTTTTGCCATG-AATCAGCAGCTGCCAGGGACCAAAACCAGGGGCAGAGGTAGAAAAGTAAACATTAAGCAGGCAGGAACTGTAGGCCGTGTGGCTTAG-AGTCATACATCCTCACAGGTCTGCTAGTGTGAAGAAGCGCACCAGTACCTCTCACACTTTCATATCAATGTGTCCTCATGGCAGAAGGCAG--------CTTTTCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101767542 240 + 121039945 AGGCAATACTGGAAGTTAAACTCAGTCCTCTGACTCCA-GCTCTGAGGTTTTGCCATG-AATCAGCAGCTGCCAGGGACCATAACCAGGGGCAGAGGTAGAAAAGTAAACACTAAGCAGGCAGGAACTGTAGGCCGTGTGGTTTAG-AGTCATACATCCTCACACGTCTGTTAGTGT---GAAGTGCACCAGTACCTCTCACACTTTCATATCAATGTGCCCTCATGGCAGAAGGCAG--------CTTTTCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113475176 244 - 169600520 GGGCAATAATGggacttaaattcagtcttctgactccaagccctggggttttgccatg-aatcaGCAGCTGGCAGAGACCAAAATCAGAGCCAGAGGTAGAAAACTAAACATTAAGTAGGCAGCAACTGCACACTGTGTGGTTTGG-AGTCACACATCCTTACATGTCTGTAGGTCTGAAGAAGTGCACCAGGACCTCTCAAACTTTTATATGCATGTGTCCTCATGGCAGAAGGCAG--------CGTTTTTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106557909 244 - 171882078 AGTTAATACTGGAACTTAAGCTCCGTCTTCTGACTCCAAGGTCTGGGGTTTTGCCATG-AATCAGCAGCTGCCAGGGACCAAAACCAGGGGCGGAGTTAGAACAGTAAACATGAAGGAGGCAGGAACTGTATGCCGTGTGGTTTAG-AGTCATACATCCTCACATGTCCGTTAGTGTGAAGAAGTGCACCAGTACCTCTCACACTTTCATATCAATGTGTCCTCATGGCAGAAGGCAG--------CTTTTCTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9935481 244 +  10730278 GGGCAATAATGGGACTTAAATTCAGTCTTCTGAGTCCAAGCTCTGGGGTTTTGCCATG-AATCAGCAGCTGCCAGAGACCAAAATCAGAGCCAGAGGTAGAAAACTAAACATTAAGTAGGCAGGAACTGCACACTGTGTGGTTTGG-AGTCACACATCCTCACACGTCTGTAAGTGTGAAGAAGTGCACCAGGACCTCTCAAACTTTTATATCCATGTGTCCTCATGGCAGAAGGCAG--------CTTTTTTG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3127660 243 +  24206276 aa-taataCTGGAACTTAAGCTCAGTCTTCTGACTCCAAGCTCTGGGGTTTTGCCATG-AATCAGCAGCTTCCAGGGACCAAAACCAGGGGCGGAGTTAGAACGGTAAACATGAAGCAGGCAGGAACCGTATGCCGTGCGGTTTAG-AGTCATACATCCTCACATGTCCGTTAGTGTGAAGAAGTGCACCAGTACCTCTCACACTTTCATGTCAATGTGTCCTCATGGCAGAAGGAAG--------CTTTTCTG
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3104512 244 +   3745603 aaGCAATACTAGAACTTAAACTCATTCCTCTAACTCCAAGCTTCGGGGTTTTGCCACA-AATCAGCAACTTCCAGAGAGCAAAACCACAGGCAGAGGTAGAAAAGTCAACATGAAGTAGGCAGGAACTGTACACCGTGTGGCTTAG-AGTCACACAGCCTCACATGTCTGTTAGTGTTAAGAAGAGCACCAGCACCTCTCACACTTCTATATCAATGTGTCCTCCTGGCAGAAGGCAG--------CCTTTCTG
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5837835 239 -  61074082 AGGCAATAATGGAATTTAAACTTAGTCTTCTGACTCTGAGTTCTGGGGTTATGCCATGAAATCAGCAGGTGCCAAAAGGCAAAACCAGAGGTGGAGGTGGAAAAG-----GTGGGAAAAATAACATCTGAGTAATCTG-ACTTTAG-AGTC---CTTTCCTACAAATCTGTTA-----AAGCTGCACATTGGTATTTATCAAACTTTTATATCAACGTATCCTGATGGCAGAAGGCAGTAAAGGCACACACCTA
i canFam3.chr9              I 3 C 0
s dasNov3.JH564958             415920 160 -    584178 AGGCAATAATGGAATTTAAACT------TCTAACTCCAGGCTCTGGAATTCTGCTATA-AATCAGTCACTGTCAGGGG-CAAAACAAGAGATATACATAAAAAAGT-AACGTTAACTGGTAAAGACCAATACATCGTGAGATTTAGAAATCAGA--------------------------------TACCAGGACT-------CTTTC----------------------------------------------
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e macNem1.NW_012011533v1      4014776 2459 +   4820037 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=2611939.000000
s hg38.chr15_KI270850v1_alt    137147 642 +    430880 TTAAATCTGGGAATTTATCAGAAAGAGGACAACCCAAGCCTCATTTCAGAGCAAAGTCTGGTATACGCTTGGAAACCTATGTGTCTGTCATCCCCAAGTACATTAATGC-------AT-----TT----TCTCAAGAGAAtcaagggaaaatgatgcttcagaaagatgtcccgcatttatcctgtggcACTCAAAGTACCCCAGGTTGAGACGATA---TGAGGAAGATT-CAAGCTGTCAAGTTCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAGAGGCCACTGACTGAAGGGCAG--------------TCTGGTCCCAGAACC--------------------GTGGAGAACTCAGA-AAAA-AATGTTAAAGTCTCTCTGGAAAGTAGAAGCCTGGGAAAAAACCAAACC-----AAACCCAT----TCT-CCCATTGCCACCCAGAGATACTGTGAACATTTTGAGCTCACAGGGGAAGTGTAGGCTTTTCCCACTGTCAAT--GTCTATG--TTAAGG----------GAGTAAGGCAGCCTGAAACCTCTTGCTCCTAGGTCCCATAGTCTCCACTCCCCTTCCAGCTGGAAATTTGTGCTGCAACCAGAGGAACCAGAAATGGGGTGAGAAAACTTAGGGGACTGGGTTGTAAGATCAAAGGCT-GGTCTTGCAGCAGTAATGACAGTTCCTAGGGG
s panPan2.chr15              23138691 663 -  99763055 TTAAATCTGGGAATTTATCCAAAAGAGGACAACTCAAGTCTCATTTCAGAGAGAAGTCTGATATACTGTTAGAAACCTATGTGACTGTCTTCCCTAAGTACATTAATGC-------TT-----TTTCTCTCTCAAGGGAAtcaagggaaattgatgcttcagaaagatctcccacatttatcctgtggcactcacagtaccccAGATTGGGATGATA---TGAGGAAGATT-CAAGCTGTCAAGTTCAATTTCCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTCCAGCGACCATTGACTGAAGGGCAG--------------TCTGGTCCCAGAACCATGAAGAATTAGAATATGAGGTGGAGAACTGAGA-AAAT-AATGTTAAAGTCTCTCTGGAGAGTAGAAGCCTGGGAGAAAATCAAACC-----AAACCTGT----TCT-CCCATTGCCACCCAGAGATACTGTCAATGTTTTGAGCTCAC-GGGGAATTGGAGGCTTTTCACGCTGTCAAT--GTCTATG--TGAAGG----------GAGTAAGGCAGCCTGAAACCTCTTGCCCCTAGGTCCCATAGTCCCCA--CCCCTTCCAGCTGGAAATTTGTGCTGTGACCAGAGGAACCAGAAATGGGGTGAGAATGCTTAGGGGACTGGGTTGTAAGATCAAAGGCC-GGTTTTGAAGCAGTAATGACAATTCCTGGGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        59839 643 -    378907 TTAAATCTGGGAATTTATCAGAAAGAGGACAACCCAAGCCTCATTTCAGAGAGAAGTCTGGTATACGCTTGGAAACCTCTGTGTCTGTCATCCCTAAGTACATTAATGT-------TT-----TT----TCTCAAGAGAAtcaagggaaaatgatgcttcagaaagatgtcccacatttatcctgtggcACTCAAAGTACCCCAGGTTGAGATGATA---TGAGGAAGATT-CAAGCTGTCAAGTTCAGTTTCCCAAGATCTATTCCACAGAAGATGAGCAAATCTCACTTCAGAGGCCACTGACTGAAGGTCAG--------------TCTGGTCCCAGAACC--------------------GTGGAGAACTCAGA-AAAT--ATGTTAAAGTCTCTCTGGAAAGTAGAAGCCTGGGAGAAAACCAAACC-----AAATCCAT----TCT-CCCACTGCCACCCAGAGATACTGTCAATGTTTTGAGCTCACAGGGGAAGTGTAGGCTTTTCACACTGTGAATTAGACATTG--TTCAGG----------GAGTAAAGCAGCCTGAAACTTCTTGCTCAGAGGTCCCATAGTCTCCACTCCCCTTCCGGCTGGAAATTTGTGCTGCAACAAGAGGAACCAGAAATGGGGGGAGAAAACTTAGGGGACTGGGTTGTAAGATCAAAGGCC-GGTCTTGCAGCAGTAATGACAGTTCCTCGTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101767782 642 + 121039945 TTAAATCTGGGAATTTATCAGAAAGAGGACAACCCAAGCCTCATTTCAGAGAGAAGTCTGGTATACGCTTGGAAACCTATGTGTCTGTCATCTCTAAGTACGTTAATGA-------TT-----TT----TCTCAAGAGAAtcaagggaaaatgatgcttcagaaagatgtcccacatttatcctgtggcACTCAAGGTACCCCAGGTTGAGATGATA---TGAGGAAGATT-CAAGCTGTCAAGTTCAGTTTCCCAAGATCTATTCCACAGAAGATGGGCAAATCTCACCTCAGAGACCACTGACTGAAGGGCAG--------------TCTGGTCCCAGAAGC--------------------GTGGAGAACTCAGA-AAAAAAATGTTAAAGTCTCTCTGGAAAGTAGAAGCCTGGGAGAAAACC-AACC-----AAACCCAT----TCT-CCCATTGCCACCCAGAGATACTGTCAATGTTTTCAGCTCACAGGGGAAGTGGAGGCTTTTCCCACTGTCAAC--GTCTATG--TGAAGG----------GAGTAAGGCAGCCTGAGACCTCTTGCTTCTAGGCCCCATAGTCCCCACTCCCCTTCCAGCTGGAAATTTATGCTGCAACCAGAGGAACCAGAAATGTGGTGAGAAAACTTAGGGGACTGGGTTGTAAGACCAAAGGCC-GGTCTTGCAGCAGTAATGACAGTTCCTAGGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113475420 666 - 169600520 TTAAATCTGGGAATTTATCAGAAAGAGGACAACCCAAGTCTCATTTCAGAGAGAAGTCTGGTATACTCTTAGAAACATATGTGACTGTCATCCCTAAGCACATTAACAT-------TTTtttctc----tctcaagagaatcaagggaaactgatgcttcagaaagatctcccacatttatcctgtggcACTCAAAGTACCCCAAGTTGAGATGATA---TGAGGAAGATT-CAAGCTGTCAAGTTCAGTTTCCCAAGATCTATTCCACAGAAGATAAGCAAATCTCACTTCAGAGACCACTGACTGAAGGGCAG--------------TCTGGTCCCAGAGCTGTGGAGAATTAGAATATGAGGTGGAGAACTCAGA-AAAA-TATGTTAAAGTCTCTCTGGAGAGTAGAAGGCTGGGTGAAAACCAAACC-----AAACCCAT----TCT-CCCATTGCCACCCAGAGATACTGTCAACG-TTTAATCTCACAGGGGAAGTATAGGCTTTTCACAAAGTCAAT--GTCTATG--CGAAGG----------AAGTAAGGCGACCTGAAACCTGTTGCTCCTAAGTCCCATAGTCCCCATTCCCCTTCCAGGTGGAAATTTGTGCTGTGGCCAGAGGAACCAGAAATGGGGCGAGAATGCTTAGGGGACTGGGTTGTAAGATGAAAGTCC-AGTCTTGCAGCAGTAATGACAGTTCCTAGGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106558153 642 - 171882078 TTAAATCTGGGAATTTTTCAGAAAGAGGACAACCCAAGCCTGATTTCAGAGAGAAGTCTGGTATATGCTTAGAAACCTATGTGACTGTCATCCCTAAGGACATTAATGT-------TT-----GA----TCTGAAGAGAATCAAGGGAAAATGACACTTCAGAAAGATGTCCCACATTCATCCTGTGGCACTCAAAGTACCCCAGGTTGAGATGATA---TGAGGAAGAGT-CAAGCTATCTAGTTCAGCTTCCCAAGATCTATTCCACTGAAGATGAGCAAATCTCACTTCAGAGACCACTGACTGAAGGACCA--------------TCTGGTCCCAGAACC--------------------GTGGAGAACTCAGA-AAAG-AATGTTAAAGTCTCTCTGCAAAGTAGAAGCCTGGGAGAAAACCAAACC-----AAACCCGT----TCT-CCCATGGCCACCCAGAGATACTGTCAAGGTTTTGAGCACACAGGGGAAGTGCAGGCTTTTCCCACTGTCAAT--GTCTATG--TGAAGG----------GAGTAAGGCAGCCTGAAACCTCCTGCTCCTGGGTCCCATAGTCCCCATTCCCCTTCCAACTGGAAATTTGTGCTGTGACCAGAGGATCCAGAAATGGGGTGAGAAAATTTATGGGACTGGGTTGTAAGATCAACGGCT-GGTCTTGTAGCAGCAATGGCAGTTCCTAGGGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4017252 665 +   4820037 TTAAATCTGGGAATTTATCAGAAAGAGGACAACCCAAGTCTCATTTCAGAGAGAAGTCTGGTATACTCTTAGAAACATATGTGACTGTCATCCGTAAGTACATTAACGT-------TT-tttctc----tctcaagagaatcaagggaaactgctgcttcagaaagatctcccacatttatcctgtggcactcatagtaccccAAGTTGAGATGATA---TGAGGAAGATT-CAAGCTGTCAAGTTCAGTTTCTCAAGATCTATTCCACAGAAGATAAGCAAATCTCACTTCAGAGACCACTGACTGAAGGGCAG--------------TCTGGTCCCAGAGCTGTGGAGAATTAGAATATGAGGTGGAGAACTCAGA-AAAA-TATGTTAAAGTCTCTCTGGAGAGTAGAAGGCTGGGTGAAAACCAAACC-----AAACCCAT----TCT-CTCATTGCCACCCAGAGATACTGTCAACG-TTTAATCTCACAGGGGAAGTGTAGGCTTTTCACAAAGTCAAT--GTCTATC--CGAAGG----------GAGTAAGGCAACCTGAAACCTGTTGCTCCTAAGTCCCATTGTCCCCATTCCCCTTCCAGGTGGAAATTTGTGCTGTGGCCAGAGGAACCAGAAATGGGGCGAGAATGCTTAGGGGACTGGGTTGTAAGATGAAAGTCC-AGTCTTGCAGCAGTAATGACAGTTCCTAGGGG
i macNem1.NW_012011533v1    M 2459 C 0
s cerAty1.NW_011999477v1      9935725 664 +  10730278 TTAAATCTGGGAATTTATCAGAAAGAGGACAA-CCAAGTCTCATTTCAGAGAGAAGTCTGGTATACTCTTAGAAACGTATGTGACTGTCATCCCTAAGTACATTAACGT-------TT-tttctc----tctcaagagaatcaagggaaactgatgcttcagaaagatctcccacatttatcctgtggcACTCAAAGTACCCCAAGTTGAGATGATA---TGAGGAAGATT-CAAGCTGTCAAGTTCAGTTTCCCAAGATCTATTCCACAGAAGATAAGCAAATCTCACTTCAGAGACCACTGACTGAAGGGCAG--------------TCTGGTCCCAGAGCTGTGGAGAATTAGAATATGAGGTGGAGAACTCAGA-AAAA-TATGTTAAAGTCTCTTTGGAGAGTAGAAAGCTGGGAGAAAACCAAACC-----AAACCCAT----TCT-CCCATTGCCACCCAGAGATGCTGTCAACG-TTTAATCTCACAGGGGAAGTGTAGGCTTTTCACAAAGTCAAT--GTCTATG--CGAAGG----------GAGTAAGGCGACCTGAAACCTGTTGCTCCTAAGTCCCATAGTCCCCATTCCCCTTCCAGGTGGAAATGTGTGCTGTGGCCAGAGGAACCAGAAATGGGGTGAGAGTGCTTAGGGGACTGGGTTGTAAGATGAAAGTCC-AGTCTTGCAGCAGTAATGACAGTCCCTAGGGA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3127903 642 +  24206276 TTAAATCTGGGAATTTTTCAGAAAGAGGACAACTCAAGCCTAATTTCAGGGAGAAGTCTGGTATATGCTTGGAAACCTATGTGACTGTCATCCCTAAGGACATTAATGT-------TT-----TA----TCTGAAGAGAAtcaagggaaaatgatgcttcagaaagatgtcccacattcatcctgtggcACTCAAAGTACCCCAGGTTGAGATGATA---TGAGGAGGAGT-CAAGCTATCTAGTTCAGCTTCCCAAGATCTACTCCACTGAAGATGAGCTAATCTCACTTCAGAGACCACTGACTGAAGGGCAG--------------TCTGGTCCCAGAACC--------------------GTGGAGAACTCAGA-AAAG-AATGTTAAGGTCTCTCTGCAAAGTAGAAGCCTGGGAGAAAACCAAACC-----AAACCCGT----TCT-CCCATGGCCACCCAGAGATACTGTCAACGTTTTGAGCTCACAGGGGAAGTGCAGGCTTTTCCCACTGTCAAT--GTCTATG--TGAAGG----------GAGTAAGGCGGCCTGAAACCTCTTGCTCCTGGGTCCCATAGTCCCTATTCCCCTTCCAACTGGAAATTTGTGCTGTGACCAGAGGATCCAGAAATGGGGTGAGAAAACTTAGGGGACTGGGTTGTAAGATCAAAGGCT-AGTCTTGCAGCAGTAATGACAGTTCCTAGGGG
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3104756 659 +   3745603 TTAAATCTGGGAATTCATCAGAAAGAGGACAACCCAAGTCTCATTTCAGAG--AAGTCTGGTATACTCTTAGAAACCTATGTGACTGTCATCCCTAAGTACATTAATGT-------TT-----TT----TCTCAAGAGAATCAAGGG-aactgatgcttcagaaagatgccccatgtttatcccatggcATTCAAAGTAGCCCAGGTTGAGATGATA---TGCGGAAGATT-CAAGCTGCCAATTTCAATTTCCCAAGATCTGTTCCACAGAAGATGAGCAGATCTCACTCCAGAGGCCACTGACTGAAGGGCAG--------------TCTGGTCCCAGAAGCATGGAGAATTACAATATGAGGTGGAGAACTCAGA-AAGA-AACGTGAAAGTCTCTCTGGAGAGTAGAAGCCTGGGAGAAAACCAAACC-----AAACCCGT----TCT-CCCATTGCTGCCCAGAGACAGTGTCAACGTTTTGAGCTCACGGGGGAAGTGTAGGCTTTTCACGCTGTCAAT--GTCTATG--TTAAAT----------GAGTGAGGCAGCCTGAAACCTCTCGCTCCTAGGTCCCACAGTCCCCATTCCCCATCCAGCTGAAAATTTGTGCTGCGACCAGAGGAGCCAGAAATGGGATGAGAATGCTTAGGGGACTGGGTCCTAAGATCAAAGGCT-GGTCTTGCAGCAGTAATGATGGTTCCTAGGGG
i aotNan1.NW_018511953v1    C 0 I 5
s canFam3.chr9                5838074 678 -  61074082 GTGAATGTGGAAACCTAACAGAAAGAGGACAATCCAAGCACCATTTCAGAGAGAAGTCTATCATAATCTTACAAATCTACACAAATGTCATCCCT-AGTACATTACTATAAAAGGATT-TTTCTT----TCTCAAAAGAATCAAGCACAATTGATGCTTCAG-------TTCTATATT-ATCCTGTGGCCCTCAGAACACTCCATGTTGAGATGATGATTTGGGGAAGATTCCCACCTATGAAATTCAGGTTCCAGAGATCAGTTCCACAGAGGATAAGCAGATCTCACTCCAAAGAGCACTGATTGATGGGGGGGAGGCGGGGGGGACTCTGGT-CCAGAATCATAAGGAATTAAAATGTGAGGTAGAGAATTCAGATTTAA-TATGTGAAAGTCTTTCTGGACAGTAGAAACCTAAAAGGAAACCATACCAAAGAAAACACAC----TCTCCCCATTGTCACC--AAGGTGTTACCAATGTTCCATGATCACTGGTGTA------------------GTCAAT--GTTTAAG--GATGGGGTACAGTCTAGAGTAAGGGCTCCTGAAACCTCTCCCACCTAGGTCCCATAGTCCCCAGTCCCCTTCAAGCTGGAAATTTGCGCCGCGACCGGAGAAACCGGAAAGGGTATGAAAACAC-TGGGAGACTGGGTAGTAAGACCAAACACCGGGGCTCCTGGCGCTAATGACAGTTCCGAGGGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416080 497 -    584178 ---------------------------------------------------------------------------------------------TTAAATATCTGTACTT-------TA-----TA----TCCCAAG------------------------------------CACTCT-------------TCGGAGTACCC------------------TAGGTGAAATT-CA----------TTCAGTTTCCCAGGATCTCTTCCAC---AGATTAGCAAATCTCACTTTAAAGAGCACTGATTGAGGGGAGT--------------TCTGGTCCCAGAATCACAGGGAATTAGAACGTGAGGCAGAGAACTTAAA-AAAT--TTTTGAAAGTCTCTCTGGAGAGTAGAAACCTGGGAGAAAACCAAAGC-----AAACAAATAGGCTCTCCCCACTGTCACCCAGTGATGTTGTAAACGTTTCAAGATCACGGGTGAAATTTGGGCTTTTCAACCTGTCAAT--GTCTGAGGATGCAGT--ACAGACCAGCATATGGAAGTTGGAAACCTCTGG-GCCTATGCCCCATAGTCCAGAGGCCCCTTCAGGCTGAAAACCTGCGGGACGACCACAGAAACCGGAAG-GGGATGAACACAC-AAGGGGTCTGGGTCGGAAGATCAAAGGCT-GGTCCTGCGGCGATTATGATAGTTAC------
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=109789.000000
s hg38.chr15_KI270850v1_alt    137789 34 +    430880 CACTGTGACATCATTGCATTCCACTCCTCCCAG----G
s panPan2.chr15              23139354 38 -  99763055 GACTGTGACATCACTACATTCCACTCCTCCTAGGGGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        60482 34 -    378907 GACTGTGACATCACTACATTCCACTCCTCCCAG----G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101768424 34 + 121039945 GACTGTGACATCACTACATTCCACTCCTCCCAG----G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113476086 34 - 169600520 GACTGTGACATCACTACATTCCACTCCTCCTGG----G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106558795 34 - 171882078 GACTGTGACGTCACTACATTCCATTCCACCCAG----G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4017917 34 +   4820037 GACTGTGACATCACTACATTCCACTCCTCCTGG----G
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9936389 34 +  10730278 GACTGTGACATCACTACATTCCACTCCTCCTGG----G
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3128545 34 +  24206276 GACTGTGACATCACTACATTCCATTCCTCCCAG----T
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5838752 31 -  61074082 GATTGTGACGTAACTACATTCCCCTCCTCCC-------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416577 25 -    584178 ------GACGTAAGTGCTTTCCGTCTCTCCT-------
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3105415  5 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=126898.000000
s hg38.chr15_KI270850v1_alt    137823 46 +    430880 GGAGGGG---ACCACATCAGCGCGATGCCCGAGTCGCTGCTCCACGATG
s panPan2.chr15              23139392 46 -  99763055 GGAGGGA---ACAACATCAGTGTGATGGCTGAGTCACCGATTCACAATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        60516 46 -    378907 GGAGGGG---ACCACATCGGCTTGATGCCCAAGTCGCCGCTCCACGATG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101768458 46 + 121039945 GGAGGGG---ACCACATCAGCACGATGCCCGAGTAACCGCTCCACAATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113476120 49 - 169600520 GGTGGGGGGAACCACATCAGTGCAATGGCTGAGTTGCTGATCCATAATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106558829 46 - 171882078 GGAGGGG---ACCACATCAGCATGATGCCCGAGTCACCACTCCATGATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4017951 49 +   4820037 GGTGGGGGGAACCACATCAGTGCAATGGCTGAGTTGCTGATCCATAATG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9936423 49 +  10730278 GGTGGGGGGAACCACATCAGTGCAATGGCTGAGTTGCTGATCCATAATG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3128579 46 +  24206276 GCAAGGG---ATCACATCGGCGTGATGCCCAAGTCACCAATCCATGATG
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3105420 46 +   3745603 GGAGGGG---ACCACATCAAGGAGATGCCTGAGTCACTGCTCCATGATG
i aotNan1.NW_018511953v1    I 5 I 14
s canFam3.chr9                5838783 30 -  61074082 ---------TACCA----------ACGCCCGAGTCGCCGCTCCGCGGTG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416602 30 -    584178 -------------------GACCCACCGTCGAGTCGCCTCTCCGCGGTG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=104996.000000
s hg38.chr15_KI270850v1_alt    137869 38 +    430880 GGGGAGGGAAACACACGGTTTCGACCCAGGTCCTCAGA
s panPan2.chr15              23139438 38 -  99763055 GGGCAGGGGGATGTAGGGCTGGGACCCAGGTCCACGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        60562 38 -    378907 GGGGAGGGAAACACAGGGTTTTGACCCAGGTCCTCGGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101768504 38 + 121039945 GGGGAGGGAAACACAGGGTTTTGATCCAGGTCCTCGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113476169 38 - 169600520 GGGGAATGGGACGTAGGGTTGGTGCCTAGGTCCTTGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106558875 37 - 171882078 GGGGAGGGAAACACAGGGATCA-ACCCAGGTCCTTGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4018000 38 +   4820037 TGGGAATGGGATGTAGGGCTGGTGCCTAGGTCCTTGGA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9936472 38 +  10730278 GGGGAATGGGACGTAGGGCTGGTGCCTAGGTCCTTGGA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3128625 38 +  24206276 GGGGAGGGAAACACAGGGTTCGGACCCAGGTCCTTGGA
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5838813 38 -  61074082 GGGGAGGGGAAAGCAGGGCTGGGACCGAGGTCCCTGGA
i canFam3.chr9              C 0 I 8
s dasNov3.JH564958             416632 34 -    584178 GGGGAGGGCAGCGCAGCGCCCGTACCGAGGTCCC----
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3105466 14 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=9306.000000
s hg38.chr15_KI270850v1_alt    137907 4 +    430880 GACG
s panPan2.chr15              23139476 4 -  99763055 GACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        60600 4 -    378907 GACG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101768542 4 + 121039945 GACG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113476207 4 - 169600520 GATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106558912 4 - 171882078 GACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4018038 4 +   4820037 GATG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9936510 4 +  10730278 GATG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3128663 4 +  24206276 GACA
i chlSab2.chr29             C 0 C 0
e aotNan1.NW_018511953v1      3105466 14 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             416666 0 -    584178 C
e canFam3.chr9                5838851 8 -  61074082 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=87245.000000
s hg38.chr15_KI270850v1_alt    137911 30 +    430880 CCAGCCCAAGAAGCCTAGGGAGGTCGAGCT
s panPan2.chr15              23139480 30 -  99763055 CCAGCCCAAAGAGCCCAGGGAGGTCGGGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        60604 30 -    378907 CCAGTCCAAGAAGCCCAGGGAGGTCGAGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101768546 30 + 121039945 TCAGCCCAAGAAGCCCAGGGAGGTCAAGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113476211 30 - 169600520 CCAGTCCAAAGAGCCCAGGGAGGTCAGGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106558916 30 - 171882078 CCAGCCCAAGGAGCCCAGGGAGGTGGAGCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4018042 30 +   4820037 CCAGTCCAAAGAGCCCAGGGAGGTCAGGCT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9936514 30 +  10730278 CCAGTCCAAAGAGCCCAGGGAGGTCAGGCT
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3128667 30 +  24206276 CCAGCTGAAGGAGCCCAGGGAGGTCGAGCT
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5838859 28 -  61074082 CCGGCCTGGAGAGCCCAGGTCCTCC--GCT
i canFam3.chr9              I 8 I 2
s dasNov3.JH564958             416666 11 -    584178 -----------------GGGAGATCGGG--
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3105466 14 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=218118.000000
s hg38.chr15_KI270850v1_alt    137941 66 +    430880 TGGGGCAGCAGGAGGGGAGGGCAGAGTCTGCAGTAGGGAGCCCCGGGAGTCACCAGCCCAAAGCCA
s panPan2.chr15              23139510 66 -  99763055 TGGGTCAGCAGGAGGGGAGAGCAGAGTCTGCAGCAGGAAGCCCCAGGAGTCACCAGCCCAAAGTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        60634 61 -    378907 TGGGGCAGCAAGAAGGGAGGGTGGAGTCTGCAGTAGGGAGCCCCAGGAGTCA-----CCAAAGTCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101768576 53 + 121039945 TGGGGC-------------GGCAGAGTCTGCAGTAGGGAGCCCGAGGAGTCACTAGCCCAAAGTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113476241 66 - 169600520 TGGGTCAGCAGGAGGGGAGAGTACAGTCTGCAGCAGGAAACCCCAGGAGTCACCAGCCCAAAGTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106558946 66 - 171882078 TGGGGCAGCAGGAGGGGAGGGCAGAGTCCGCAGTAGGGAGCCCCGGGAATCACCAGCCTAAAGTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4018072 66 +   4820037 TGGGTCAGCAGGAGGTGAGAGTACAGTCTGCAGCAGGAAACCCCAGGAGTCACCAGCCCAAAGTCA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9936544 64 +  10730278 TGGATCAGCAGGAGGGGAGAGT--AGTCTGCAGCAGGAAACCCCAGGAGTCACCAGCCCAAAGTCA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3128697 66 +  24206276 TGGGGCAGCAGGAGGGGAGGGCAGAGTCCGCAGTAGGGAGCCCCAGGAATCACCAGTCAAAAGTCA
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3105480 66 +   3745603 TGGGGGAGCAGGAGGGAAGGGCAGAGTCTGCAGCAGGGATTCCCAGGAATCACCAGCCCAAAGTCA
i aotNan1.NW_018511953v1    I 14 C 0
s canFam3.chr9                5838889 65 -  61074082 -TGGGTGGCAGAAGGCTAGGGCCAAACCTGGAGCAGGGAGCCCGGGGAGTCACCAGCCCAAAGTCA
i canFam3.chr9              I 2 T 90
s dasNov3.JH564958             416677  7 -    584178 ------------------------------------------------------AGCCCAA-----
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=38134.000000
s hg38.chr15_KI270850v1_alt    138007 11 +    430880 CCCAGGGATGA
s panPan2.chr15              23139576 11 -  99763055 CCCAGGGATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        60695 11 -    378907 CCCAGGGATGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101768629 11 + 121039945 CCCAGGGATGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113476307 11 - 169600520 CCCGGGGATGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106559012 11 - 171882078 CCCAAGGACGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4018138 11 +   4820037 CCCGGGGATGA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9936608 11 +  10730278 CCCGGGGATGA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3128763 11 +  24206276 CCCAAGGACGA
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3105546 11 +   3745603 CCCAGAAATGA
i aotNan1.NW_018511953v1    C 0 C 0
s dasNov3.JH564958             416684  5 -    584178 ------GTTGG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr9                5838954 90 -  61074082 T
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=6600.000000
s hg38.chr15_KI270850v1_alt    138018 1 +    430880 C
s panPan2.chr15              23139587 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        60706 1 -    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101768640 1 + 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113476318 1 - 169600520 C
i rheMac8.chr7              C 0 I 14
s macFas5.chr7              106559023 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4018149 1 +   4820037 C
i macNem1.NW_012011533v1    C 0 I 9
s cerAty1.NW_011999477v1      9936619 1 +  10730278 C
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3128774 1 +  24206276 C
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3105557 1 +   3745603 C
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5838864 1 -  61074082 C
i canFam3.chr9              T 90 C 0
s dasNov3.JH564958             416689 1 -    584178 C
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=3062.000000
s hg38.chr15_KI270850v1_alt    138019 10 +    430880 TGGTGA-GGGC
s panPan2.chr15              23139588 11 -  99763055 TGGTGAGGGGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        60707 10 -    378907 TGGCCA-GGGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101768641 10 + 121039945 TGGCAA-GGGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106559024 10 - 171882078 TGGCAA-CGGT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_011999477v1      9936620  8 +  10730278 --GCGA-TAGT
i cerAty1.NW_011999477v1    C 0 I 1
s chlSab2.chr29               3128775 10 +  24206276 TGGCGA-CGGT
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3105558 10 +   3745603 TGATGA-GGGC
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5838865 10 -  61074082 TGGAGA-GCCC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416690  3 -    584178 CGG--------
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e macNem1.NW_012011533v1      4018150  9 +   4820037 I
e rheMac8.chr7              113476319 14 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=7301.000000
s hg38.chr15_KI270850v1_alt    138029 5 +    430880 AGGGC
s panPan2.chr15              23139599 5 -  99763055 GGGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        60717 5 -    378907 GGGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101768651 5 + 121039945 GGGGC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106559034 5 - 171882078 GGGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4018159 5 +   4820037 GGGGG
i macNem1.NW_012011533v1    I 9 C 0
s cerAty1.NW_011999477v1      9936629 5 +  10730278 GGGGG
i cerAty1.NW_011999477v1    I 1 C 0
s chlSab2.chr29               3128785 5 +  24206276 GGGGC
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3105568 1 +   3745603 ---G-
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5838875 5 -  61074082 AGGTC
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e dasNov3.JH564958             416693 0 -    584178 C
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e rheMac8.chr7              113476319 14 - 169600520 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=440804.000000
s hg38.chr15_KI270850v1_alt    138034 128 +    430880 CTGGGGCTGGGGGACCCAGGTCCTGGGAGACGCAAGCCCAAAGAGCCCAGGGAGGTTGGGCTTGGGGTGGCAGGAGGTGAGAGCTGATTATGGAGCAG-----GGAGCCCCAGGAGTCACCTGCCCAAAGTCA
s panPan2.chr15              23139604 128 -  99763055 CTGGGGCTGGGGGACCCAGGTCCTTGGAGAGGTGAGCCCAAAGAACTCAGGGAGGTCGGGCTTGGGGTGGCAGGATGTGAAGGCTGAGTATGGAGCCG-----GGAGCCCCAGAAGTCACTCGCCCAAAGTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        60722 128 -    378907 TGGGGGCTGGGGGACCCAGGTCCTGGGAGACACAAGCCCGAAGAGCCCAGGGAGGTTGGGCTTGGGGTGGCAGGAGGTGAGGGCCGAGTATGGAGCAG-----GGAGCCCCAGGAGTCACCCACCCAAAGTCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101768656 128 + 121039945 CTGGGGCTGGGAGATCCAGGTCCTGGGAGACGCAAGCCCAGAGAGCCCAGGGAGGTTGGGCTTGGGGCAATAGGAGGTGAGGGCCGAGTATGGAGCAG-----GGAGCCCCAGGAATCACCTGCCCAAAGTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113476333 128 - 169600520 CTGGGGCTGGGGGACCCAGGTCCTCCGACAGCTGAGCCCAAAGAACCCAGGGAGGTTGGATTTGGGGCAGCAGGACGTGAGGGGTGAGTATAGAGCAG-----GGAGCCCCAGGAGTCACTTCCCAAAAGTCA
i rheMac8.chr7              I 14 C 0
s macFas5.chr7              106559039 128 - 171882078 CTGGGGATGGAGTACCCAGGTCCTGGGAGACGCAAGCCCGAAGAGCCCAGGAAGGTCAGGCTTGGGGCAGCAGGAGGTGAGGGCCAAGTATGGAGTGG-----GGAGCCCCAGGAGTCACCCGCCCAAAGTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4018164 128 +   4820037 CTGGGGCTGGGGGACCCAGGTCCTCCGACAGCTGAGCCCAAAGAACCCAGGGAGGTTGGATTTGGGGCAGCAGGACGTGAGGGGTGAGTATAGAGCAG-----GGAGCCCCAGGAGTCACTTCCCAAAAGTCA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9936634 128 +  10730278 CTGGGGCTGGGGGACCCAGGTCCTCCGACAGCTGAGCCCAAAGAACCCAGGGAGGTTGGGTTTGGGGCAGCAGGACGTGAGGGGTGAGTATAGAGCAG-----GGAGCCCCAGGAGTCACTTCCCAAAAGTCA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3128790 128 +  24206276 CTGGGGCTGGGGTACCCAGGTCCTGGGAGACACAAGCACAAAGAGTCCAGGAAGGTCAGGCTTGGGGCAGCAGGAGGTGAGGGCCGAGTATGGAGCGG-----GGAGCCCCAGGAGTCACCAACCCAAAGTCA
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3105569 126 +   3745603 --GGGGCTGGGAGACCCACGTCCTTAGAGACATGAGCCCACAGAGCCCAGGGAGCTCAGACATGGAGCAGCAAAAGGTGAGGCCCACGTAGGGAGCGG-----GGAGCCTCAGGAGTTACACATCCAAAGTCA
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9                5838880  74 -  61074082 --------------CTCCGCTTCT----------------------------------------GGGTGGCAGAAGGCTAGGGCCAAACCTGGAGCAG-----GGAGCCCGGGGAGTCACCAGCCCAAAGTCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416693  90 -    584178 ------------------------------------------GAGCCCAAGGTGGCCCGGTTCTGGGCGGCAGGGGGCGAGGGCTGCTCCCGGTGCCGGTGCCGGTGCCCCGGG-GTCAAGAGCCCAAAGTCA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=5500.000000
s hg38.chr15_KI270850v1_alt    138162 1 +    430880 C
s panPan2.chr15              23139732 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        60850 1 -    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101768784 1 + 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113476461 1 - 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106559167 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4018292 1 +   4820037 C
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9936762 1 +  10730278 C
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3128918 1 +  24206276 C
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3105695 1 +   3745603 C
i aotNan1.NW_018511953v1    C 0 C 0
s dasNov3.JH564958             416783 1 -    584178 C
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e canFam3.chr9                5838954 0 -  61074082 C
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=602554.000000
s hg38.chr15_KI270850v1_alt    138163 172 +    430880 CCTGGGGT---GATTGGCAAGGGCAGGGACTGGGCTGCTTGCTGAAGGGGTGGGGCTGACTGACTAGGCTT-TGGTT-GGGGGAGCCCAGAGGGGCTGGGGTTGGGGG---GCCCCATCTGGTATGCCTCAGGAGTGGTATGGACTCTGGCACAGGTCTTGTCATCGGAGGGGATCTGTG-
s panPan2.chr15              23139733 173 -  99763055 CCTGGGGT---GATTGGTGAGGGCAGGGCCTGAGCTGCTTGCTGAAGGGGCGGGACTGACTGACAAGACTT-TGGTTGGGGGGAGCACAGAGGTGCCAGTGTGGGGGG---ACCCAGCCCGGTGTGCCTAAAGGCTGGTATGGACTCTGGCAGTGGTCTTGCCATCAAAGGGGATCTGTG-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        60851 172 -    378907 CCTGGGGT---GAATGGCAAGGGCAGGGACTGGGCTCCTTGCTGAAGGGGTGGGGCTGACTGACAAGACTT-TGGTG-GGGGGAGCCCAGAGGCGCTGGGGTTGGGGG---GCCTAGTCTGGTATGCCTCAGGAGTGGTATGGACTCTGCCACCGGTCTTGTCATCGGAGGGGATCTGTG-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101768785 172 + 121039945 CTTGGGGT---GATTGGCAAGGGCAGGGACTGGGCTCCTTGCTGAAGGGGTGGGGCTGACTGACAAGACTT-TGGTC-AGGGGAGCCCAGAGGCGCTGGGGTTGGGGG---GCCCAGTCTGGTATGCCTCAGGACTGGTATGGACTCTGGCACCGGTCTTGTCATCAGAGGGCGTCTGTG-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113476462 172 - 169600520 CATGGAGT---GACTGGCGAGGGCAGAGGCTGAGCTGCTTGCTGAGGGGGCAGGGCTGACCGATGAGACTT-TGGTG-TGGGGAGCCCAGAGGTGCCAGGGTTAGGGG---GCCCAGCCCAGTGTGCCTCAGGAGTGGTATGTACTCTGGCAGTGGTCTTGTCATTGGAGGGTATCTCTG-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106559168 175 - 171882078 CCTGGGGTAAAGATCGGCAAGGGCAGGGATTGGGCTGCTTGCTGAAGGGGTGGGGCTGACTGACAAGAATT-TGGTG-GGGGGAGCCCAGAGTCGCTGGTGTTGGGGG---TCCCATTCCAGTATGCCTGAGGAATAGTATGGGCTCTGGCAATGGTCTTGTCATCGGAGAGGATCTGTG-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4018293 172 +   4820037 CATGGAGT---GACTGGCAAGGGCAGAGGCTGAGCTGCTTGCTGAGGGGGCAGGGCTGACCGATGAGACTT-TGGTG-TGGGGAGCCCAGAGGTGCCAGGGTTAGGGG---GCCCAGCCCAGTGTGCCTCAGGAGTGATATGTACTCTGGCAGTGGTCTTGTCATTGGAGGGTATCTCTG-
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9936763 172 +  10730278 CATGGAGT---GACTGGCGAGGGCAGAGGCTGAGCTGCTTGCTGAGGGGGCAGGGCTGACCGATGAGACTT-TGGTG-GGGAGAGCCCAGAGGTGCCAGAGTTAGGGG---GCCCAGCCCAGTGTGCCTCAGGAGTGGTGTGTACTCTGGCAGTGGTCTTGTCATTGGAGGGTATCTCTG-
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3128919 175 +  24206276 CTTGGGGTAAAGATCGGCAAGGGCAGGGATTCGGCTGCTTGCTGAAGGGGTGGGGCTGACTGACAAGAATT-TGGTG-GGGGTAACCCAGAGTCGCTGGTGTTGGGGG---TCCCATTCCGGTATGCCTGAGAAATAGTATGGGCTCTGGCAATGGTCTTGTCGTCGGAGAGGATCTGTG-
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3105696 173 +   3745603 CCTGGGGT---GATTGGCAAGGGCAGGGGCTGGGCTCCTTGCCGAAAGGGTGGGACTCACTGAAAAGACGT-TGGTA-GGGGGAGCCCAGAGGCACTGGGGTTGGGGGCCCACCCAGTCTGGTGT--CTCAGAAGTGTAATGGACTCTGGCAGCGGTCTTGCCGTCGGAGGGGATCTGTG-
i aotNan1.NW_018511953v1    C 0 I 223
s canFam3.chr9                5838954 160 -  61074082 ccgggggc---ggcgggcgagggcgggggctgggcagccgg-----ggggcgggACTGGCTGAGACGACTTGGGGTG-GGGGGCGCCAAGGGGCGTCA-------CGG---GGCTAGCCCCGTGTGCCTCAGGGGCAGCAAAGATTCTGGCCACGGCCCGGCCGTCCGAGGGG-CCTTTG-
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416784 158 -    584178 CTGGGAGC---GACCGGCTAGGGCGAGGGCTGGGCGGC---CGAGGGGGGCGGGACTGGTTGAGAAGACCA-----G-GTGGGCGCCAAGGAGAGCCA------TGGG---GTTCTCCCCAG--TGCCTCAGGGGCGGCTCAGACTCTGGTCACGGTGAGGGGGTTGGAGGGGGCGTCGGG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=667610.000000
s hg38.chr15_KI270850v1_alt    138335 218 +    430880 GCTGGGTT-GGGGGCCATGACCTGGTGTGTTTTACCTTTTTCTTGGCTGCGGCCAATTTCCCCTGTTGTGTTTTTTCTGACATCGCGGGGTGGGGAGGGAGGCGGGGTTGGGGCCACATCAGCGAAATACCAGTGAGCACTGCTCAATGCCTCCAGTCACCTACCAGGCAGCTGTGCAACTGAGCCACAGGT-GGCGTAACCAGGGCACCAATGGAACGC--
s panPan2.chr15              23139906 198 -  99763055 GCTGGGTTGGGGGGCCATGATCTGATGCGTTTTACTTTTTTCTTGGCTGCGTCCAGTTTACTCTGTTGAGTTTCTTCTAACATCGTGGGGTGGGGAGGGAGGCAGGGTTAGGGCCACATCAGCGAA----CA-----------------CCTCCAGTCACCTACCAGGCAGCTGTGTGACTGAGCCAGAGGA-GGTGTAACCAGGGCCACACTGTAATGC--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        61023 217 -    378907 GCTGGGTT-GGGGGCCATGACCTGGTGCGTTTTACCTTTTTCTTGGCTGCGGCCAATTTCCCCTGTTGTGTTTTTTCTGACATCGC-GGGTGGGGAGGGAGGCGGGGTTGGGGCCACATCAGCAAAATCCCAGTGAGCACTGCTGAATGCCTCCAGTCACCTACAAGGCAGCTGTGTGACTGAGCCACAGGT-GGCGTAACCAGGGCACCAATGGAACGC--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101768957 218 + 121039945 GCTGGGTT-GGGGGCCATGACCTGGGGCGTTTTACCTTTTTCTTGGCTGCGGCCAATTTCCCCTGTTGTGCTTTTCCTGACATCGTGGGGTGCGGAGTGGGGCAGGGTTGGGGCCACTTCAGTGAAATCCCAGTGAGCACTGCTGAATGCCTCCAGTCACCTACCAGGCAGCTGTGTGACTGAGCCACAGGA-GGCTTAACCAAGGCGCCACTAGAATGC--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113476634 198 - 169600520 GCTAGGTTGGGGGGCCATGACCTGTTGTGTCTTACCTTTTTCTTGGCTGCTGCCAATTGACTCTGTCGAGTCTCTTCTAACATCATGGGGTGGGGAGGGAGGCAGGGTTGGGGCCACATCAGT---------------------GAACACCTCCAGTCACCTACCAGGCGGCTGTGTGACTGAGCCAGAGGA-GGCGTAACCAGGGCCCCACTAGAATGC--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106559343 218 - 171882078 GTTGGGTT-GGGGGCTATGACCTGGTGCATTTTACCTTTTTCTTGGCTGTGGTGAATTTTCCCTGTCGTGTTTTTTCTGACATCATGGGGTGCGGAGGGAGGCGGGGTTGGGGTCACATCAGCGAAATCCCAGTGAGCACGGCTGAATGCCTCCAGTCACCTACCAGGCCGCTGTGCAACTGAGCCAGAGGA-GGCGTAACCAGGGCCCCACTAGAACTC--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4018465 198 +   4820037 GCTAGGTTGGGGGGCCATGACCTGTTGTGTCTTACCTTTTTCTTGGCTGCTGCCAATTGACTCTGTCGAGTCTCTTCTAACATCATGGGGTGGGGAGGGAGGCAGGGTTGGGGCCACATCAGC---------------------GAACACCTCCAGTCACCTACCAGGCGGCTGTGTGACTGAGCCAGAGGA-GGCGTAACCAGGGCCCCACTAGAATGC--
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9936935 198 +  10730278 GCTAGGTTGGGGGGCCATGACCTGTTGTGTCTTACCTTTTTCTTGGCTGCTGCCAATTGACTCTGTCGAGTCTCTTCTAACATCATGGGGTGGGGAGGGAGGCAGGGTTGGGGCCACATCAGC---------------------GAACACCTCCAGTCACCTACCAGGCGGCTGTGTGACTGAGCCAGAGGA-GGCGTAACCAGGGCCCCACTAGAATGC--
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3129094 218 +  24206276 GCTGGGTT-GGGGGCTATGACCTGGTGCATTTTACCTTTTTCTTGGCTGTGGTGAATTTTCCCTGTCGTGTTTTTTCTGACATCATGGGGTGCGGAGGGAGGCGGGGTTGGGGTCACATCAGCGAAATCCCAGTGAGCACGGCTGAATGCCTCCAGTCACCTACCAGGCCGCTGTGCAACTGAGCCAGAGGA-GGCGTAACTAGGGCCCCACTAGAACTC--
i chlSab2.chr29             C 0 C 0
s canFam3.chr9                5839114 218 -  61074082 GCTGGGTCAGGGAGCCGCGACCCGGCACGTTTTACCTTTTTCTTGGCCGCAGCCAATTTGCTCTGTCGGGTTTCTTCCGACATCCCGGGACGGGGAGGG-GTAAGGGGGGTGGCCACATCACCGCGATCCCGGCAACCACCGCGGCATCACTTCCGGCAGTCACCGCGCCGGTGTGCGACTGAGCCAGAAAG-GGAGGGACCCTAGAGTTTCTAGGTAGC--
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             416942 218 -    584178 GCTGGGTC-GGGAGCCTCGACCCAGCGCGCTTTACCTTTTTCTTCGCTGCAGCCAATTTGCTCTTTCGGGTTTCTTCCGACATCGCGGAAAGGGGCGGGGTAAGGGG---GGGCCACATCACCGCGATCCCGGCAGACACTTCGCAATTGCTTCCGCTCGTTACCGCGCCGATGCGGGTCTGAGCCAGGGAAGGGAGGGACCAGGGCGGTCCTAGGCAACAC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1      3105869 223 +   3745603 I
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=695351.000000
s hg38.chr15_KI270850v1_alt    138553 167 +    430880 AGAATAGGGGCGTGGCCTTAATGCTCCAAGCCCATTGGTCAGTGAGAAAGATGAAAGGGAAAGGAGGCGTGGCCAGGCAGC----AGCATGTCCAGAGGGACCTGTGGCATCATAAGGAAAGCTGCCCATGCAACCGCTGTCCCCGC-CCACTCAGAGAAAG---------------------------GGGAGGGGCC---------
s panPan2.chr15              23140104 193 -  99763055 AGAAT-GGGGCGGGGCCTTAATGCTCCAAGCCCATTGGTCAATGAGAAAGATGAAAGGGAAAGGAGGCGTGGCCAGGCAGC----AGTGTGTCCAGAGGAACCTGTGGCATCACAAGGAAAGCTGCCCATGCAACTGCTGTCCCCAC-CCACTTGGGGAGAGGGGCGGGGCCTGCCTACTCCAGGAGCAGGGAGGGGCT---------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        61240 167 -    378907 AGAATAGGGGCGTGGCCTTAATGCTCCAAGCCCATTGGTCAGTGAGAAAGATGAAAGGGAAAGGAGGCGTGGCCAGGCAGC----AGCATGTCCAGAGGGACCTGTGGCATCATAAGGCAAGCTGCCCATGCAACTGCTGTCCCCGC-CCACTAAGAGAGAG---------------------------GGGAGGGGCT---------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101769175 166 + 121039945 AGAATAGGGGTGTGGCCTTAATGCTCCAAGCCCATTGGTCAGTGACAAAGATGAAAGGGAAAGGAGGCGTGGCCAGGCAGC----AGCATGTACAGAGGGACCTGTGGCATCATAAGGAAAGTGGCCCATGCAACCGCTGTCCCCGC-CCACTCAGAGAGG----------------------------GGGAGGGGCC---------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113476832 167 - 169600520 AGAATGGGGGCGTGGCCTTAATGCTCCAAGCCCATTGGTCAATGAGAAAGATGAAAGGGAAAGGAGGCGTGGCCAGGGAGC----AGTGTGTCCAGAGTAACCTGTGGCATCACAAGGAAAGCTGCCCACACAACTGCTGTCCCCGC-CCACTTGGGGAGAG---------------------------GGGCGGGGCC---------
i rheMac8.chr7              C 0 I 34
s macFas5.chr7              106559561 159 - 171882078 AGAAGAGGGGCGTGGCCTTAATGCTCCAAGCCCATTGGTCAGTGAGAAAGATGAAAGGGAAAGGAAGCGTGGCCAGGCAGC----AGGGTGTCCAGAGGGACCTGTGGCATCACAAGGAAAGCTGCCCATTCAACCGCT---------CTACTCAGAAGGAG---------------------------GGGAGGGGCC---------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4018663 167 +   4820037 AGAATGGGGGCGTGGCCTTAATGCTCCAAGCCCATTGGTCAATGAGAAAGATGAAAGGGAAAGGAGGCGTGGCCAGGGAGC----AGTGTGCCCAGAGGAACCTGTGGCATCACAAGGAAAGCTGCCCACACAACTGCTGTCCCCGC-CCACTTGGGGAGAG---------------------------GGGTGGGGCC---------
i macNem1.NW_012011533v1    C 0 I 1
s cerAty1.NW_011999477v1      9937133 167 +  10730278 AGAATGGGGGCGTGGCCTTAATTCTTCAAGCCCATTGGTCAATGAGAAAGATGAAAGGGAAAGGAGGCGTGGCCAGGGAGC----AGTGTGTCCAGAGGAACCTGTGGCATCACAAGGAAAGCTGCCCACACAACTGCTGTCCCTGC-CCACTTGGGGAGAG---------------------------GGGCGGGGCC---------
i cerAty1.NW_011999477v1    C 0 I 1
s chlSab2.chr29               3129312 168 +  24206276 AGAAGAGGGGCGTGGCCTTAATGCTCCAAGCCCATTGGTCAGTGAGAAAGATGAAAGGGAAAGGAAGCATGGCCAGGCGGC----AGCATGTCCAGAGGGACCTGTGGCATCACAAGGAAAGCTGCCCATGCAACCACTTTCTCCGCTCTACTCAGAAGGAG---------------------------GGGAGGGGCC---------
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3106092 165 +   3745603 AGAATAGGGGCGTGGCCTTCATGCTGCAATCCCATTGGTCAATGAGAAAGACGAAAGGGAAGGGAGGCGTGGCCAGGCAGC----AACCACTCCGGAGGGACCTGTGGCCTCCCAAGGACAGCTGCCCCTCCAACTCCTGTCCCCGC-CCACTCTGAGAG-----------------------------GGGAAGGGCC---------
i aotNan1.NW_018511953v1    I 223 C 0
s canFam3.chr9                5839332 157 -  61074082 AGCTGGTGGGCGTGGCCTCAATGCTCCAATTCTATTGGCTGGTGAGAAAGATGAACGGGGGAATGGGCGTGGTCAGGTTGC----CGC----------GAGCAGGTGGAGTGACAATGAAAGCTGCGCGCGCAGCCTCTGGCCCCGC-CCACTTCGGGGCGG---------------------------GGGCGGGACC---------
i canFam3.chr9              C 0 N 0
s dasNov3.JH564958             417160 175 -    584178 AGAATGTGGGCGTGGCCTAAATGCTCCCAGCTCATTGGGCAACGAGAAAGATGAAA-GAAAAGGGGGCGAGGTCAGACAGCTGTGAGGGTGACCAGAAGG----GTGGAGTCACAATGCAGGCTGCGCGCGCAGCCGCTGTCACCGC-CCACATTGGGGGAG---------------------------GGGCAAAGGCGGTTTCTCC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=49741.000000
s hg38.chr15_KI270850v1_alt    138720 25 +    430880 GCCCAC-TCTGGGAG--AGGGGAAGGGC
s panPan2.chr15              23140297 25 -  99763055 GCCCAC-TCCAGGAG--AGGGGAGGGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        61407 25 -    378907 GCCCAC-TCTGTGAG--AGGGGAGGGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101769341 25 + 121039945 ACCCAC-TCTGGAAG--AGGGGAGGGGA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106559720 25 - 171882078 GCCCAC-TCTGGGAG--AGGCAAGGGTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4018831 20 +   4820037 GCCTAC-TCTGGGGT-------GGGGGC
i macNem1.NW_012011533v1    I 1 C 0
s cerAty1.NW_011999477v1      9937301 27 +  10730278 GCCTAC-TCCTGGAGGAGGGGGGGGTGC
i cerAty1.NW_011999477v1    I 1 C 0
s chlSab2.chr29               3129480 25 +  24206276 GCCCAC-TCTGGGAG--AGGCAAGGGTC
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3106257 25 +   3745603 ACCCAC-TCCGGGAG--AGCGGAAGGGC
i aotNan1.NW_018511953v1    C 0 C 0
s dasNov3.JH564958             417335 26 -    584178 GCCCACGTCAGGGGG--CGGGGCTAGGC
i dasNov3.JH564958          C 0 N 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e rheMac8.chr7              113476999 34 - 169600520 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=10394.000000
s hg38.chr15_KI270850v1_alt    138745 4 +    430880 TGGG
s panPan2.chr15              23140322 4 -  99763055 TGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        61432 4 -    378907 TGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101769366 4 + 121039945 TGGC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106559745 4 - 171882078 TGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4018851 4 +   4820037 TGGT
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9937328 4 +  10730278 TGGC
i cerAty1.NW_011999477v1    C 0 I 1
s chlSab2.chr29               3129505 4 +  24206276 TGGC
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3106282 4 +   3745603 CGGC
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e rheMac8.chr7              113476999 34 - 169600520 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=47752.000000
s hg38.chr15_KI270850v1_alt    138749 21 +    430880 TTTTGCTTTAAAACTTTTAAA
s panPan2.chr15              23140326 21 -  99763055 TTTTGCTTTAAAAGCTTTAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        61436 21 -    378907 TTTTGCTTTAAAAGCTTTAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101769370 21 + 121039945 TTTTGCTTTAAAAGCTTTAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113477033 13 - 169600520 TTTTGCTTTAAAA--------
i rheMac8.chr7              I 34 C 0
s macFas5.chr7              106559749 21 - 171882078 TTTAGCTTTAAAAGCTTTAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4018855 13 +   4820037 TTTTGCTTTAAAA--------
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9937333 13 +  10730278 TTTTGCTTTAAAA--------
i cerAty1.NW_011999477v1    I 1 C 0
s chlSab2.chr29               3129509 21 +  24206276 TTTTGCTTTAAAAGCTTTAAA
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018511953v1      3106286 21 +   3745603 TTTTGCCTTTAAACTTTTAAA
i aotNan1.NW_018511953v1    C 0 N 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=88098.000000
s hg38.chr15_KI270850v1_alt    138770 44 +    430880 ACTGT-AAAAAATAAACTTTAAAAAATATATGTGTATATACTTTA
s panPan2.chr15              23140347 43 -  99763055 ACTTT--AAAAATAAACTTTAAAAAATATATGTGCTTATACTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        61457 43 -    378907 ACTGTAAAAAAATAAACTTTAAAAAATATATGTGTGTATACTT--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101769391 44 + 121039945 ACTGT-AAAAAGTAAACTTTAAAAAATATATGTGTGTATACTTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113477046 42 - 169600520 --CGT-TAAAAATAAATTTTAAAAAATATATGTGTTTATACTCTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106559770 44 - 171882078 ACTGT-AAAAAATAAACTTAAAAATGTATACATGTGTATACTTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4018868 40 +   4820037 --CGT-TCAAAATAAACTTTAAAA--AATATGTGTTTATACTCTA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9937346 42 +  10730278 --CGT-TAAAAATAAATTTTAAAAAATATATGTGTTTATACTCTA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3129530 44 +  24206276 ACTGT-AAAAACTAAACTTAAAAATGTATACATGTGTATACTTTA
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             113866255 79192 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=186761.000000
s hg38.chr15_KI270850v1_alt    138814 63 +    430880 TATATAtgtgtgtc----tgtgtgtgtgtatctatgtgtTCCTCCAGAGCTGTCTTCATTATGCAGC
s panPan2.chr15              23140390 63 -  99763055 TATATATGTGTATC----AGTGTGCATATGTCTACATGTTCCACCAGAGCTGTCTTCATTATCCAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        61500 59 -    378907 TATATATGTGTGTC----TGTGTG----TACCTATGTGTTCCTCCAGAGCTGTCTTCATTATGCAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101769435 63 + 121039945 TATATAtgtgtgtc----tgtgtgtgtgtatctatgtgtTCTTCCAGAGCTGTTTTCATTATCCAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113477088 63 - 169600520 AATATATGTGTGTC----AGTGTGTGTGTGTCTACATGTTCCTCCAGAGCTCTCTTCATTATCCAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106559814 63 - 171882078 TATATAtgtgtgtc----tgtgtgtgtgtATCTATGCGTTCCTCCAGAGCTGTCTTCATTATCCAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4018908 67 +   4820037 AATATAtgtgtgtcagtgtgtgtgtgtgtgtCCACATGTTCCTCCAGAGCTCTCTTCATTATCCAGC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9937388 63 +  10730278 AATATATGTGTGTC----AGTGTGTGTGTGTCTACATGTTCCTCCAGAGCTCTCTTCATTATCCAGC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3129574 61 +  24206276 TATATATGTGTGTC------TGTGTGTGTATCTATGCGTTCCTCCAGAGCTGTCTTCATTATCCAGC
i chlSab2.chr29             C 0 C 0
s calJac3.chr10              18316629 49 + 132174527 TATATCTGTGTATC----TGTGTGTGT--------------CTTAAAAGCTGTCTTCATTATCCAGT
i calJac3.chr10             n 79192 n 79192
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=63639.000000
s hg38.chr15_KI270850v1_alt    138877 24 +    430880 TTCTGTGCAAAGTCTGTGATTTTG
s panPan2.chr15              23140453 24 -  99763055 TTTTACGCAAGGTCTATGATTTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        61559 24 -    378907 TTCTATGCAAAGTCTATGATTTTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101769498 24 + 121039945 TTCTATGCAAAGTCTATGATTTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113477151 24 - 169600520 TTCTATGCATGGTCTATGATTTTA
i rheMac8.chr7              C 0 I 313
s macFas5.chr7              106559877 24 - 171882078 TTCTATGCAAAGTCTATGATTTTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4018975 24 +   4820037 TTCTATGCATGGTCTATGATTTTA
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9937451 24 +  10730278 TTCTATGCATGGTCTATGATTTTA
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3129635 24 +  24206276 GTCTATGCAAAGTCTATGAGTTTG
i chlSab2.chr29             C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=97634.000000
s hg38.chr15_KI270850v1_alt    138901 33 +    430880 GCCTATATTTTTCATCTTCAAATGGAGTACAAG
s panPan2.chr15              23140477 33 -  99763055 GCCTACATTTTTCATCTTCAAATGAAGTACAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        61583 33 -    378907 GCCTATATTTTTCATCTTCAAGTGGAGCACGAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101769522 33 + 121039945 ACCTGTATTTTTCATCTTCAAATGGAGCACAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113477488 33 - 169600520 GCCTACATTTTTCATCTTCAGATGGAGTACAAG
i rheMac8.chr7              I 313 C 0
s macFas5.chr7              106559901 33 - 171882078 GACTATATTTTTCATCTTCAAATGGAGTATAAG
i macFas5.chr7              C 0 I 276
s macNem1.NW_012011533v1      4018999 33 +   4820037 GCCTACATTTTTCATCTTCAGATGGAGTACAAG
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9937475 33 +  10730278 GCCTACATTTTTCATCTTCAGATGGAGTACAAG
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3129659 33 +  24206276 GCCTATATTTTTCATCTTCAAATGGAGTACAAG
i chlSab2.chr29             C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=1394170.000000
s hg38.chr15_KI270850v1_alt    138934 538 +    430880 AATTACCAGTATTACCTTAACTGAGATATAGATCCTATAAAAATGGAAAATCCATAGCATGCTTGATGATTAATGAAGCCGACTATAGTATCCGACATTCCAATAAGACAAAATAATCACAACAATTTCTCTTTTTTGGAAAAATGTTTGTCTTATTCTCCTACATTATTGTTAAGATTTCTTTT-AAAAACAAGAAACATGTCTAATATCTTTAAAAACACAAAGCTTTTGggccgggtgcggtggctcacgcctgtaatgccatcactttgggaggccgaggtgggtggattgcctg-aggtcaggagttcgagaccagcctggccaacatgatgaaaccctgtctctactaaaaatacaaaaactagccaggcgtggttgcgggtgcctgtaatcccagctatttgggaggctgaggcaggagaatcacttgaacccaggagatggaggttgcagtgagccaagctcacgccactgcactccagcctgggcgacagagcaagactccatctcaaaaga-----aataaaataaaata----------caaaa
s panPan2.chr15              23140510 521 -  99763055 AATTACCAGTGTTACCTCAATTGAGATACAACTCCTATAAAAATGGAAAATCCATAGCATGCTTGATGTTTAATGAAGTGGACTATATTATCCAACATTCCAATAAG-----ATAATCACAATGAATTCTTTTTTTTGGAAAAA-GTTTCTCTTAATCTCCTGCATTA---TTAAGATTT-TTTT-AAAA--AATAAACATGTCTAATATCTTTAAAAACACAAAGCTTTTGTgccgggtgcagtggctcactcccataatcccagcactttgggaggcctaggcgggtggatcacctt-aggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaactagccaggtgtggtcatgggtacctgcaatcccagctactcgggagactgaagcaggagaatcacttgaacct-ggaagccgaagttgcagtgagccaaggtcacaccactgcactgcagcctgggtgacagactgagactccatctacaaaaa--------aaaaaaaagta-----------aaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        61616 538 -    378907 ATTTACCAGTATTACCTTAACTGAGATATAGATCCTATAAAAATGGAAAATCCATAGCATGCTTGATGATTAATGAAGCCAACTATAGTATCCGACATTCCAATAACAGAAAATAATCACAATGATTTCTCTTTTTTGGAAAAATGTT----------GTCTATATTATTGTTAAGATTTCTTTT-AAAAACAAGAAACATGTCTAACACCTTTAAAAACACAAAGCTTTTGggccgggtgcagtggctcacccccgtaatgccatcactttgggaggccgaggtgggcggatcgcctg-aggtcaggagttcgagaccagcctggccaacatgaagaaaccctgtctctactaaaaatacaaaaactagccaggtgtggtggtgggtgcctgtaatcccagctatttgggaggctgaggcaggagaatcacttgaacccaggagatggaggttgcagtgagccaagctcatgccactgcactccagcctgggtgacacagcaagactccatctcaaaata-----aataaaataaaataaaaTAAGATACAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101769555 551 + 121039945 AATTACCAGTATTACCTTAACTGAGATATAGATCCTATAAAAATGGAAAATCCATAGCATGCTTGATGATTAATGAAGCCGACTATAGTATCCAACATTCCAATAGGACAAAATAATCACAATGATTTC--TTTTTTGGAAAAATGTTTGTCTTATTCTTCTACATTATTGTTAAGATTTTTTTA-AAAAACAAGAACCATGTCTAATATCTTTAAAAACACAAAGCTTTTGggccgggtgtggtggctcatgcctataatgccgtcactttgggaggccgaggtggttggatcacctg-aggtcaggagtttgagaccagcctggccaacatgaagaaaccctgtctctactaaaaatacgaaaactagccaggcgtggtggtgggtacctgtaatcccagctatttgggaggctgaggcgggagaatcacttgaacccaggagacggaggttgcagtgagccaagctcacgccactgcactccagcctgggcgacagagcaagactccatctcaaaacaaaacaaaacaaataaaataaaaTAAAATACAAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113477521 533 - 169600520 AATTATCAGTATTACCTCAATTGAG--ACAAATCCTATAAAAATGGAAAATCCATAGCACATTTGATGATTAATGAAGTGGACTATATTACCCAACATTCCAATAAGGTAAAATAATCACAATGATTTCTCTTTTTTGGAAAAACATTTCTTTTATTCTCCTACATAA---TTAAGATTTTTTTA-AAAAACAAGAAACATGTCTAATAT-GTTAAAAACACAAAGCTTTTGggctgggtgtggtggctcacacctgtaatcccaacattttgggaggcctaggcgggtggatcacctt-aggtcaggagttcaagaccagcctggccaacatggtaaaaccccatctctactaaaaatacaaaagctagccaggtgtggtggtgggtacctgtaatcccagctattcaggaggctgaggcaggagaataacttgaacctgtgaggtggaagttgctgtgagccaagctcacaccactgcactccagcctgggtgacacagtgagactccatctcaaaa-a-----aatataacaaaaTAG--------TCAAAA
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              106560210 540 - 171882078 aaTTACCAGTATCACCTTAACTGAGATACAGGTCCTATAAAAATGGAAAATTCATAGCATGCTTGATGATTAAGGAAGTAGACTATAGTATCCAACATTCCAATAAGACAAAATAATCACAATGATCTCTCTTTTTTGGAAGAACATTTCTCTTATTCTCCTACATTA---TGAAGATTTTTCTT-TTTAATGATAAACATGTCTAATATCTTTAAAAACACAAAGCTTTTGggccaggtgcggtggttcacacctgtaatgccatcactttgggaggccgaggtgggtggatcgcctg-aggtcaggagttcaagaccaacatggccaacatgatgaaaccctgtctgtactaaaaatacaaaaactagccaggcgtggtggtgggtgcctgtaatcccagctatttggtcggctgaggcaggagaattacctgaacccaggagacggaggttgcagtgagccaagctcacgcccctgcacttcagcctgggcaacagagcaagactccatctcaaaaga-----aataaaataaaataaa-----acacaaaa
i macFas5.chr7              I 276 C 0
s macNem1.NW_012011533v1      4019032 534 +   4820037 AATTACCAGTATTACCTCAATTGAG--ACAAATCCTATAAAAGTAGAAAATCCATAGCACGTTTGATGATTAATGAAGTGGACTATATTATCCAACATTCCAATAAGGTAAAATAATCACAATGATTTCTCTTTTTTGGAAAAACATTTCTTTCATTCTCCTACATAA---TTAAGATTTTTTTTAAAAAACAAGAAACATGTCTAATAT-GTTAAAAACACAAAGCTTTTGggctgggtgtggtggcccacacttgtaatcccaacattttgggaggcctaggcgggtggatcacctt-aggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaagctagccaggtgtggtggtgggtacctgtaatcccagctattcaggaggctgaggcaggagaataacttgaacctgtgaggtggaagttgctgtgagccaagctcacgccactgcactccagcctgggtgacacagtgagactccatctcaaaa-a-----aatataacaaaaTAG--------TCAAAA
i macNem1.NW_012011533v1    C 0 I 170
s cerAty1.NW_011999477v1      9937508 533 +  10730278 AATTATCAGTATTACCTCAACTGAG--ACAAATCCTATAAAAATGGAAAATCCAGAGCATGTTTGATGATTAATGAAGTGGACTATATTATCCAACATTCCAATAAGGTAAAATAATCACAATGATTTCTCTTTTTTGGAAAAACATTTCTTTTATTCTCCTACATAA---TTAAGATTTTTTTA-AAAAACAAGAAACATGTCTAATAT-GTTAAAAACACAAAGCTTTTGggctgggtgtggtggcccacacttgtaatcccaacattttgggaggcctaggcgggtggatcacctt-aggtcaggagttcaagaccagcctggccaacacggtgaaaccccatctctactaaaaatacaaaagctagccaggtgtggtggtgggtacctgtaatcccagctattcaggaggctgaggcaggagaataacttgaacctgtgaggtggaagttgctgtgagccaagctcacaccactgcactccagcctgggcgacacagtgagactccatctcaaaa-a-----aataaaacaaaaTAG--------TCAAAA
i cerAty1.NW_011999477v1    C 0 I 1
s chlSab2.chr29               3129692 542 +  24206276 AATTACCAGTATCACCTTCACTGAGATACAGATCCTATAAAAATGGAAAATTCATAGCATGCTTGATGATTAATGAAGTAGACTGTAGTATCCACCATTCCAATAAGACAAAATAATCACAATGATTTCTCTTTTTTGGAAGAACGTTTCTCTTATTCTCCTACATTA---CGAAGATTTTTTTTTTTAAATGATAAACATGTCTAATATCTTTAAAAACACAAAGCTTTTGggccgggtgtggtggttcatgcctgtaatgccatcactttgggaggccgaggtgggtggatcgccttgaggtcaggagttcaagaccaacctggccaacatgatgaaaccctgtctgtaccaaaaatacaaaaactagccaggcgtggtggtgggtgcctgtaatcccagctattcggtcggctgaggcaggagaattacctgaacccaggagacggaggttgcagtgagccaagctcacgcccctgcacttcagcctcggcaacagagcaagactccatctcaaaaga-----aataaaattaaataaa-----acacaaaa
i chlSab2.chr29             C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=181300.000000
s hg38.chr15_KI270850v1_alt    139472 74 +    430880 TAAGTAAGAACACAAAGCTTTCAATTTAATAACCACTTAAAGCTCTTTACTGGTTTAAGAGAATTACAAGGCCC
s panPan2.chr15              23141031 74 -  99763055 ttaataaaaaCACAAAGCTTTCAATTTAATAAGCACTCAAAGCTCTTCACTGGTTTAAAGCATATACAAGGCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        62154 74 -    378907 TAAGTAGGAACACAAAACTTCCAATTTAATAAGCACTTAAAGCTCTTTACTGGTTTAAAACAAATACAAGGCCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101770106 74 + 121039945 TAACTAAGAACACAAAGCTTTCAATTTAATAACCACTTAAAGCTCTTTACTGGTTTAAGAGAAATACAAGGCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113478055 73 - 169600520 TAAATAAAAACACAAAGCTTTCAACTTAATCAGCACTCAAAGCTCTTT-CTGGTTTAAAGTATACACAAGGTCT
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              106560750 74 - 171882078 TAAGTAAGAACACAAAGCTTTCAATTTAATAAGCACTTAAAACTCTCTACTTGTTTAAGAGAAATACAAGTCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4019736 73 +   4820037 TAAATAAAAACACAAAGCTTTCAACTTAATCAGCACTCAAAGCTCTTT-CTGGTTTAAAGTATACACAAGGTCT
i macNem1.NW_012011533v1    I 170 C 0
s cerAty1.NW_011999477v1      9938042 73 +  10730278 TAAATAAAAACACAAAGCTTTCAACTTAATCAGCACTCAAAGCTCTTT-CTGGTTTAAAGTATACACAAGGTCT
i cerAty1.NW_011999477v1    I 1 C 0
s chlSab2.chr29               3130234 74 +  24206276 TAAGTAAGAACACAAAGCTTTCAATTTAATAAACACTTAAAACTCTCTAGTTGTTTAAGAGAAATACAAGTCCC
i chlSab2.chr29             C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e colAng1.NW_012116021v1       264171 3181 +   4111199 I
e manLeu1.NW_012105520v1      1053317 3929 +   1458659 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=920332.000000
s hg38.chr15_KI270850v1_alt    139546 218 +    430880 ATTTTTCTAGAATCACCTGGCCTCTCTAAGCCTTGCAAATGAAGCTGAATTTCTCACTTGATACTTGGCTCTCACTTGCAGTCATGAAAACCAAGAATT-TGTTATGTCACTGTGTATTGCTTGTTACC--------TGAAATCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCATGATTTTCTCCATAACCTGTGTGCTTCTTATCCCACACCAAACTAAGCT
s panPan2.chr15              23141105 219 -  99763055 ATTTTTCTAGAATCACCTGGCCTCTCTAAGCCTTGCAAATGAAACTGAATTTCTCACTTGATACTTGGCTATGACTTGCAATCATGAAAACCAAGAATTGTGTTACGTCACTGTGTATTGCTTGTTACT--------TGAATTCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCATGATTTGCTCCATAACCTGTGAGCTTCTTTTCCCACACCAAACTAAGCT
i panPan2.chr15             C 0 I 5982
s gorGor5.CYUI01015946v1        62228 218 -    378907 ATTTTTCTAGACTCACCAGGCCTCTCTAAGCCTTGCAAATGAAACTGAATTCCTCACTTGATACCTGGCTGTGACTTGCAATCATGAAAACCAAGAATTGTGTTATGTCACTGTGTACTGCTTGTTACC--------TGAAATCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCATGATTTTCTCCATAACCTGTGTGCTTCTTATCTCAGACCGAACTAAGC-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101770180 218 + 121039945 ATTTTAATAGAATCACTCGGCCTCTCTAAGCCTTGCAAATGAAACTGAATTTCTCACTTGATACTTGGCTATGACTTGCAATCATGAAAACCAAGAATTGTGTTATGTCACTGTGTATTGCTTGTTACC--------TGAATTCCACAGTAGGCTGGAATCAAGGGTTGAATCTTTCATGATTTTCTCCATAACCTGTGTGCTTCTGATCCCACACCAAACTAAGC-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113478128 226 - 169600520 ATTTTTCTAGAATCACCTGACCTCTCTAAGCCTTGCAAATGAAACTGAATTTCTCACTTGATACTTGCCTGTGACTTGCAATCATGAAAACCAATAACTGTGTTATGTCACTGTGTATTGCTTGTTACATTACACAGTGAGTTCCACACTAGGCTGAGATCAAGGGTTGAATCTTTCACGATTTGCCCCATAACCTGTGAGCTTCTTTTCCCACACTAAACTAAGC-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106560824 212 - 171882078 AGTATTCTAG-ATCACCTGACCTCTCTAAGCCTTGCAAATGAAACTGAATTTCTCACTTGATACTTGGCTATGATTTGCAATCATGAAAACCGAGAA-----TTATGTCACTGTGTACTGCTTGTTACC--------TGAATTCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCATGATTTTCTCCATAACCTGTGTGCTTCTTATCCCAGACCAAACTAAGT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4019809 226 +   4820037 ATTTTTCTAGAATCACCTGACCTCTCTAAGCCTTGCAAATGAAACTGAATTTCTCACTTGATACTTGCCTGTGACTTGCAATCATGAAAACCAAGAACTGTGTTATGTCACTGTGTATTGCTTGTTACATTACACAGTGAGTTCCACACTAGGCTGAGATCAAGGGTTGAATCTTTCACGATTTACCCCATAAGCTGTGAGCTTCTTTTCCCACACTAAACTAAGC-
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9938115 226 +  10730278 ATTTTTCTAGAATCACCTGACCTCTCTAAACCTTGCAAATGAAACTGAATTTCTCACTTGATACTTGCCTGTGACTTGCAACCATGAAAACCAAGAACTGTGTTATGTCACTGTGTATTGCTTGTTACAATACACAGTGAGTTCCACACTAGGCTGAGATCAAGGGTTGAATCTTTCACGATTTGCCCCACAACCTGTGAGCTTCTTTTCCCACACTAAACTAAGC-
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3130308 205 +  24206276 AGTATTCTAG-ATCACCTGACCTCTCTAAGCCTTGCAAATGAAACTGAATTTCTCACTTGATACTTGGCTATGATTTGCAATCATGAAAACCAAGAATTATGT------------CACTGCTTGTTACC--------TGAATTCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCATGATTTTCTCCATAACCTGTGTGCTTCTTATCCCAGACCAAACTACGT-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1057246 218 +   1458659 ATTTTTCTAGAATCACCTGGCCTCTCTAAGCCCTGTGAATGAAACTGAATTTCTCACTCAATACCTGGCTATGACTTGCAATCATGAAAACCAAGAATTGTGTTATGTCACCGTGTATTGCTTGTAACC--------TGAATTCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCATGATTTGCTCCATAACCTGTATGCTTTTTATCCCAGACCAAACTAAGC-
i manLeu1.NW_012105520v1    I 3929 C 0
s colAng1.NW_012116021v1       267352 218 +   4111199 ATTTTTCTAGAATCACCTGGCCTCTCTAAGCCCTGTGAACGAAACTGAATTTCTCACTCAATACCTGGCTATGACTTGCGATCATGAAAACCAAGAATTGTGTTATGTCACCGTGTATTGCTTGTAACC--------TGAATTCCACACTAGGCTGGGATCAAGGGTTGAATCTTTCATGATTTGCTCCATAACCTGTGTGCTTCTTATCTCAGACCAAACTAAGC-
i colAng1.NW_012116021v1    I 3181 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=1577768.000000
s hg38.chr15_KI270850v1_alt    139764 373 +    430880 TTTTTTCTAGAGCTCTGCAACTTACAGTTAGTATATGAGagcagttctcaaaaatgtagtctctggactagcagctccagcagcacctgggaacttcttataaatacacatcctccggccccaccctggacctgatgaatca-gaaactctggagtagggctcagcaatctgtgctgcagtaatccctccaggtgTTCAAGAACCTCTGGCATACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAACCAGGGATACTATATGTTTTCTCT--ATATG-AAACAATGACGTGCAATTAAAAGACATAAATCTCCTTCCTGCTCCCACCTTCCAGCCAATGTGTTTTATTTTTATGAGTTAAATAAG-AAAA
s panPan2.chr15              23147306 376 -  99763055 TTTTTTCTAGAGTTCTACAATTCACAGTTAGTAGACAAGaggggttctcaaaaatgtagtctctggactagcagcaccagcagaacctgagaactttttataagtgcaaattctcaggccccaccctggacctggtgaatcaagaaactctggagtagggctcagcaatctgtgctgtggtcatccctgcaggtgTTCAAGAACCTCTGGCATACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAGCCAGGGATACCATATGTTCTGTCTTGATATG-AAACAATGACATGCAATTAAAAGACATAAATCTCTTTCCTACCCCCACCCTCCATCCAATATGTTTTATTTTTATGAGTTAAATAAG-AAAA
i panPan2.chr15             I 5982 C 0
s gorGor5.CYUI01015946v1        62446 375 -    378907 TTTTTTCTAGAGTTCTACAATTTACACTTAATAGACAAGagtggttctc-aaaatgtagtctatggactagcagctccagcagcacctgagacctttttataagtgcaaattctcaggccccaccctggacctggtgaatca-gaaactctggagtagggctcagcaatctgtgctgcagtcatccctccaagtgTTCAAGAACCTCTGGCATACAGCAGGTAGTAAAATGTGTTTCCTTCTGTAGGTCCAAAGCCAGGGTTACCATATGTTCTGCCTTGTTATG-AAACAATGACATGCAATTAAAAGACAAGAATCTCCTTCCTACTCGCACCCTCCATCCAATGTGTTTTATTTGTATGAGTTCCATAAGAAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101770398 374 + 121039945 TTTTTTCTAGAGCTCTGCAATTTACAGTTAGTATATGAGagtggttctcaaaaatgtagtctctggactagcagctccagcagcacctgggaacttcttataa-tacaaattctcaggccccaccctggatctgatgaatca-gaaactcctcagtagggctcagcaatctgtgctgcagtaatccctccagctgTTAAAGAGCCTCTGGCACACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAGCCAGGGATACTATATGTTCTGTCTCGGTATG-AAACAATGACACGCAATTAAAAGACATAAACCTCCTTCCTGCTCCCGCCCTCCAGCCAATGTGTTTTATTTTTATGAGTTAAATAAG-AAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113478354 375 - 169600520 TTTTTTCTAGAGTTCTACAATTTACAGTTAGTAGACAAGagtggttctcaaaaatgtagtctctggactagcagcaccagcagaacctgagaactttttataagtgcaaattcttaggcttcaccctggacctcgtgaaaga-gaaactctggagtagggctcagcaatctgtgctgtagtaatcctttcaggtgtttAAAAACCTCTGGCATACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAGCCAGGAATACCATGTGTTCTGTCTTGATATG-AAACCATGATATGCAATTAAAACACATAAATCTCCTTCCTACTCCCACCCTCCAACCAATGTGTTTTATTTTTATGAGTTAAATAAG-AAAA
i rheMac8.chr7              C 0 I 7
s macFas5.chr7              106561036 373 - 171882078 TTTTTTCTAGAATTCTACAGTTTACAATTAATAGACAAGagtggttttc-aaaatgtagtctatggactaacagcaccagcagcacctgagatctttttacaagtgcaaattctcaggtcccaccctgggcctggtgaatcg-gaaactctggagtagggctcagcagtctgtgctgcagtagtccctccaggtgTTCAAGAACCTCTGGCATACGGCAGGCAGAAAAATATGTTTCCTTCTGTAGGTCC-AAGCCAGGGATACCATATGTTCTGCCTTGTTATA-CAACAATGACATGCAATTAAAAGACATAAATCTCCTTCCTACTCCCACCCTCCATCCAACGTGTTTTATTTTTATGAGTTCAATTAG-AAAA
i macFas5.chr7              C 0 I 7
s macNem1.NW_012011533v1      4020035 375 +   4820037 TTTTTTCTAGAGTTCTACAATTTACAGTTAGTAGACAAGagtggttctcaaaaatgtagtctctggactagcagcaccagcagaacctgagaagtttttataagtgcaaattctcaggcttcaccctggacctcgtgaaaga-gaaactctggagtagggctcagcaatctgtgctgtagtaatcctttcaggtgtttAAAAACCTCTGGCATACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAGCCAGGAATACCATGTGTTCTGTCTTGATACG-AAACCATGATATGCAATTAAAACACATAAATCTCCTTCCTACTCCCACCCTCCAACCAATGTGTTTTATTTTTATGAGTTAAATAAG-AAAA
i macNem1.NW_012011533v1    C 0 I 7
s cerAty1.NW_011999477v1      9938341 375 +  10730278 TTTTTTCTAGAGTTCTACAATTTACAGTTAGTAGACAAGagtggttctcaaaaatgtagtctctggactagcagcaccagcagaacctgagaactttttataagtgcaaattctcaggcttcaccctggaccttgtgaaaga-gaaactctggagtagggctcagcaatctgtgctgcagtaatccctccaggtgtttAAAAACTTCTGGCATACAGCAGGTAGAAAAATGTGTTTCCTTCTGTAGGTCCAAAGCCAGGGATACCATGTGTTCTGTCTTGATATG-AAACCATTATATGCAATTAAAACACATAAATCTCCTTCCTACTCCCACCCTCCAACCAATGTGTTTTATTTTTATGAGTTAAATAAG-AAAA
i cerAty1.NW_011999477v1    C 0 I 7
s chlSab2.chr29               3130513 371 +  24206276 TTTTTTCTAGAATTCTACAATTTACAGTTA--ATAGACGagtggttttcaaa-atgtagtctatggactaacagcaccagcagcacctgagatcttttcataagtgcaaattctcaggtcccaccctggacctggtgaatcg-gaaactctggagtagggctcagaagtctgtgctgcagtagtccctccaggtgTTCAAGAACCTCTGGCATACAGCAGGCAGAAAAATATGTTTCCTTCTGTAGGTCC-AAGCCAGGGATACCATGTGTTCTGCCTTGTTATA-CAACAATGACATGCAATTAAAAGACATAAATCTCCTTCCTACTCCCACCCTCCATCCAACGTGTTTTATTTTTATGAGTTCAATTAG-AAAA
i chlSab2.chr29             C 0 I 7
s manLeu1.NW_012105520v1      1057464 375 +   1458659 TTTTTTCTAGAGTTCTGCAATTTACAGTTAGTATATAAGagtggttttcaaacatgtagtctctggaccagcagctctagcagcacctgggaacttcttataaatgcaaattctcaggccccaccctggacctgatgaatca-gaaactctggactagggctcagcaatctgtgctgcagtagtccctccaggtgTTCAAGAACCTCTGGCATACGGCAGGTAGTAAAATGTATTTCCTTCTGTAGGTCCAAAGCCAGGGATACTATATGTTCTGTCTCGATATG-AGAAAATGACATGCAATTAAAAGACGTATATCTCCTTCCTACTCCCACCCTCCATCCAATGTGTTTTATTTTTATGAGTTAAATAAG-AAAA
i manLeu1.NW_012105520v1    C 0 I 6981
s colAng1.NW_012116021v1       267570 370 +   4111199 TTTTTTCTAGAGGTCTGCAATTTACAGTTAGTATATAATagtggttttcaaacatgtggtctctggactagcagctctagcagcacctgggaacttctta------caaattctcaggccccaccctggacctgatgaatca-gaaactctggactagggctcagcaatctgtgctgcagtagtccctccaggtattcAAGAACCTCTGGCATATAGCAGGTAGTAACATGTGTTTCCTTCTGTAGGTCCAAAGCCAGGGATACTATACGGTCTGTCTCAATATGAAAAAAATGATACACAATTAAAAGACATATATCTCCTTCCTACTCCCACCCTCTATCCAATGTGTTTTATTTTTATGAGTTAAATAAG-AAAA
i colAng1.NW_012116021v1    C 0 I 7
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=304001.000000
s hg38.chr15_KI270850v1_alt    140137  96 +    430880 CA-------ATCAGAGATTTTGTCTAAATCGCATATTTACAGGTATCAGTTCTCATCCAGCCTGATCTTATCCAATATCATTTATATTCTCTTACATGTGAAG
s panPan2.chr15              23147682 103 -  99763055 CAGATGGCAATCAGAAATTCAGTCTAAAAAGTATATTTACAAGAGTCAGTTCTCATCCAGCCTGATCTCATACAATACCATTTACACCCTCTTACCTCTCAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        62821 100 -    378907 CAAGCGGCAATCAGAGATTTAGTCTAAAAAGTATGTTTACAAGTGTCCGTTCTCATCCAGCCTGATC---TACAAAACCATTTACATCCTCTTACATCTCAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101770772 103 + 121039945 CATGTGGCAATCAGAGATTTCATCTAAAACATTTATTTACAGGTATCAGTTCTCATCCAGCCTGATCTCATCCAATATCATTTATATTCTCTTACATGTGAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113478736  96 - 169600520 -------CAATCAGGGATTCAGTCTAAAAAGTATATTTACAAGTGTTAGTTCTCATCCAGCCTGATCTCATACAACACCATTTACACCCTTTTACCTCTCAAG
i rheMac8.chr7              I 7 C 0
s macFas5.chr7              106561416  96 - 171882078 -------CAATCAGAGATTTAGTCTAAAATATATATTTACAAGTGTCAGTTCTCATCCAGCCTGATCTCATACAAAACCATTTACGTCCTCTTACACCTCAAG
i macFas5.chr7              I 7 C 0
s macNem1.NW_012011533v1      4020417  96 +   4820037 -------CAATCAGGGATTCAGTCTAAAAAGTATATTTACAAGTGTTAGTTCTCATCCAGCCTGATCTCATACAACACCATTTACACCCTTTTACCTCTCAAG
i macNem1.NW_012011533v1    I 7 C 0
s cerAty1.NW_011999477v1      9938723  96 +  10730278 -------CAATCAGAGATTCAGTCTGAAAAGTATATTTACAAGTGTTAGTTCTCATCCAGCCTGATCTCATACAACACCATTTACACCCTTTTACCTCTCAAG
i cerAty1.NW_011999477v1    I 7 C 0
s chlSab2.chr29               3130891  96 +  24206276 -------CAATCAGAGATTTAGTCTAAAATATATATTTACAAGTGTCAGTTCTCATCCAGCCTGATCTCATACAAAACCATTTACGTACTCTTACACCTCAAG
i chlSab2.chr29             I 7 C 0
s colAng1.NW_012116021v1       267947  96 +   4111199 -------CAATCAGAGATTTCATCTAAAACGTATATTTACAGGTATCAGTTCTCATCCAGCCTGATCTCATCCAATATCATTTATTTCCTCTTACATGTAAAG
i colAng1.NW_012116021v1    I 7 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e manLeu1.NW_012105520v1      1057839 6981 +   1458659 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=1011436.000000
s hg38.chr15_KI270850v1_alt    140233 246 +    430880 TTTTAGAGAAGGATCTTCACAATGTAAGACTCAGGCACACTAGCAGTTCTGTAATAAAACACCAAGTAGATCAGAATGTCCAAACTTACTGGAGAAGAAAAGTGGAATCATTGGCTATATTTTCAAATTGCAATAAACAGGATATTAAAGTTTTGAA-TTTTTTTCACCTTCATCCTTCCACGTTAATAGAATTAAGCCAAAATACTTG--TCTTCCAAAGCCTCTAGCCAGGCAAAATTTTACTATAT
s panPan2.chr15              23147785 247 -  99763055 TTT-AAAAAAGTATCTTCACAATGTAAGTCTCAGGCACACTAGCAGTTCTGTAATAAAACACCAAGTAGATCAGAACGTCCAAACTTACTAGAGAAGAAAAGTGGAATCATTGACTCTATTTTCAAATTGCATTGAACAGGAAATATAAGTTTTGAA-TTATTTTGACTTTCATACTTCCAAATTAATAGAATTAAATCAGAATACTCCATTCTTTCAAAGCCTCTAGCCAGGCAAAGTTTTACTGTAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1        62921 248 -    378907 TTTTAAAAAAGTATCTTCACAATGTAAGACTCAAGCACACTAGCAGTTCTATAATAAAACACCAAGTAGATCAGAATGTCCAACCTTACTAGAGAAGAAAAGTGGAATCATTGGCCATATTTTCAAATTGCATTCAACAGGAAATTTAAGTTTTGAA-TTTTTTTCACCTTCATACTTCCAAAGTAATAGAATTAAACCAGAATACGCCATTCTTTCAAAGCCTCTAGCCAGGCAAAGTTTTACTGTAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101770875 249 + 121039945 TTTTAGAAAAGGGTCTTCACAATGTAAGACTCAGGCACACTAGGAGTTCTATAATAAAACAGCAAGTAGATCAGAATGTCCAAACTTACTGGAGAAGAAAGGTGGAATCATTGGCTATATTTTCAAATTGCATTCAACAGGAAATTAAAGTTTTGAATTTTTTTTCACTTTCATCCTTCCAAGTTAATAGAATTAAGCCAAAATACTCCAGTCTTCCAAAGCCTCTAGCCAGGCAAAATTTTACTATAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113478832 248 - 169600520 TTTTAAAAAAGTATCTTCACAATGTAAGTCTCAGGCAAACTAGCAGTTCTATAATAAAACGCCAAGTAGATGGGAATGTCCAAACTTACTAGAGAAGAAAAGTGGAATGATTGGCTGTATTTTCAAATTGCATTCAACAGGAAATGTAAGTTTTGAA-TTCTTTTCACCTTCATACTTCCAAGTTAATAGAATTAAATCAGAATACTCCATTCTTTCACAGCCTCTAGCCAGGCAAAGTTTTACTGTAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106561512 241 - 171882078 TTTGAAAAATGTATCCTCACAATGTGAGACTCAGGCACACTAGCAGTTCTATCATAAAACACCAAGTAGATTGGAATGTCCAACCTTACTAGAGAAGAAAAGTGGAATCACTGGCTATATTTCCAAATTGCATTCAACAGGAAA-------TTTGAG-TTTTTTTCACCTTCATACTTCCAATTTAATAGAATTAAACCAGAATACGCCATTCTTTCAAAGCCTCTAGCCAGGCAAAGTTTTACTGTAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4020513 248 +   4820037 TTTTAAAAAAGTATCTTCACAATGTAAGTCTCAGGCAAACTAGCAGTTCTATAATAAAACGCCAAGTAGATGGGAATGTCCAAACTTACTAGAGAAGAAAAGTGGAATGATTGGCTGTATTTTCAAATTGCATTCAACAGGAAATGTAAGTTTTGAA-TTCTTTTCACCTTCATACTTCCAAGTTAATAGAATTAAATCAGAATACTCCATTCTTTCACAGCCTCTAGCCAGGCAAAGTTTTACTGTAC
i macNem1.NW_012011533v1    C 0 C 0
s cerAty1.NW_011999477v1      9938819 248 +  10730278 TTTTAAAAAAGTATCTTCACAATGTAAGTCTCAGGCAAACTAGCAGTTCTATAATAAAACGCCAAGTAGATGGGAATGTCTAAACTTACTAGAGAAGAAAAGTGGAATGATTGGTTGTATTTTCAAATTGCATTCAACAGGAAATGTAAGTTTTGAA-TTCTTTTCACCTTCATAATTCCAAGTTAATAGAATTAAATCAGTATACTCCATTCTTTCACAGCCTCTAGCCAGGCAAAGTTTTACTGTAC
i cerAty1.NW_011999477v1    C 0 C 0
s chlSab2.chr29               3130987 239 +  24206276 TTTGAAAAATGTATCTTCACAATGTGAGACTCAGGCACACTAGCAGTTCTATCATAAAACAACAAGTAGATTGGAATGTCCAACCTTACTAGAGAAGAAGAGTGGAATCACTGGCTATATTTCCAAATTGCATTCAACAAGAAA-------TTTGAG-TTTTTTTCACCTTCATACTGCCAATTTAATAGAATTAAACCAGAATACACCATTCTTTCAAAGCCTCTAGCCAGGC--AGTTTTACTGTAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1064820 242 +   1458659 TTTTAGAAAAGGATCTTCACAATGTAAGACTCAGGCATACTAGGAGTTCTGTAATAAAACACCAAGTAGATCAGAATGTCCAAAATTACTGGAGAAGAAAACTGGAATCATTGGTTATATTTTCAAATTGCATTCAACAGGAAATTTAAGTTTTGAA-TTTTTTTCACCTTCATCTTCC------AATAGAATTAAGCCAAAATACTCCAGCCTTCCAAAGCCTCTAGCCAGGCAAAATTTTACTATAT
i manLeu1.NW_012105520v1    I 6981 C 0
s colAng1.NW_012116021v1       268043 247 +   4111199 TTTTAGAAAAGGATCTTCACAATGTAAGACTCAGGCATACTAGGAGTTCTGTAATAAAACACCAAGTAGATCAGAATGTCCAAAATTACTGGAGAAGAAAACTGGAATCATTGGTTATATTTTCAAATTGCATTCAACAGGAAATTTAAGTTTTGAA-TTTTTTTCACCTTCAT-CTTCCAAGTTAATAGAATTAAGCCAAAATACCCCAGTCTTCCAAAGCCTGTAGCCAGGCACAATTTTACTATAT
i colAng1.NW_012116021v1    C 0 I 317
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=1485285.000000
s hg38.chr15_KI270850v1_alt    140479 355 +    430880 TACTTCTTGCTTTTCA-ATGGCTATAAAGCAGACTCCTGGTAGGCACATTTGGTATACCTGCAAAGATGAAGAACTAAACAGTTCCATCTGTTCAATACTGAAACAAAAGTCCTGCAAACCTCGGATGGTGAGTGTAATACTTCAGCACTAGCACCAAAGCCTCAAATATGAAAAGATACCAAGAACACCACTAGCAAACAAAACTAAACTCTCggctgggagctctagttcatgcc-gtaatcccagcactttggcaagcaaaggtgggaggattacttgaagtcaggaattcaagaccagccttggcagcatagtgaattcacacctctac-agaaagtttttaaaattagctggg
s panPan2.chr15              23148032 355 -  99763055 TACTTCTTGCTTT-CA-AAGGATATAAAGCAGAGTCCTGCTAGGCACATTTTGTATACATGCAAAGATGCAGAACTAAACAGTTCCATCTGTTCAATATTAAAACGAAAGTCCTTTAAACCTTGGATGGTGAGTGTAATACTTCAGCACTAGCAACAAAGCCTCAAATATGAAAAGATACCAAGATCGCCACTAGCAAACAAAACTAAACTCTCAgccgggagcagtagttcacacctgtaatcccagcactttggcaagccaaggtgggaggattacttgaagtcaggagttcaagaccaggctggtcagcatagcgaattcacatctccac-aaaaaaaatttaaaattagctggg
i panPan2.chr15             C 0 N 0
s gorGor5.CYUI01015946v1        63169 354 -    378907 TATTTCTTGCTTT-CA-ATGGATATAAAGCAGATTCCTGGTAGGCACATTCTGTATACCTGCAAAGATGCAGAACTAAACAGTTCCATCTGTTCAATATTAAACCAAAAGTCCTGTAGACCTCGGATGGTGAGTGTAATACTTCAGCACTAGC-CCAAAACCTCAAATATGAAAAGATGCCAAGAACACCACTAGCAAACAAAACTAAACTCTCggtcaggagcagtagctgacacctgtaatcccagcactttggcaagccgaggtgggaggattacttgaagtcaggagttcaagactagcctgggcagcatagagaattcacatctccac-aaaaatttttgaacattagctggg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101771124 355 + 121039945 TACTTCTTGCTTTTCA-ATGGCTATAAAGCAGACTCCTGGTAGGCACATTTGGTATATCTGCAAAGATGAAGCACTAAACAGTTCCATCTGTTCAATACTGAAACAAAAGTCCTGCAAACCTCGGATGGTGAGTGTAATACTTCAGCACTAGCACCAAAGCCTCAAATATGAAAAGATACCAAGAACACCACTAGCAAACAAAACTAAACTCTCAgccgggagctctagttcatgca-ataatcccagcactttggcaagccaagttgggaggatgacttgaagtcaggagttcaagaccagtctgggcagcatagtgaattcacatctctac-aaaaagtttttaaaattagctgga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              113479080 353 - 169600520 TACTTCTTGCTTT-CC-GTAGATATAAAGCAGAGTCCTGGTAGGCACTTTTTGTATGCCTGCAAAGATGCAGAACTAG--AGTTCCATCTGTTCAATATTAAAACAAAAGTCCTGTAAACCTTGGATGGTAAGTGTAATACTTCAGCACTAGCACCAAAGCCTCAAATATGAAAAGATACCAAGAACATCACTAGCAAACAAAACTAAACTGTCAgccaggagcagtagttcacacctgtaatcccagcactttggcaagccaaggtgggaggattatttgaagtcaggagttcaagactagcctgggcagcacagcaaattcacatctccac-aaaaaattttaaaaattagctggg
i rheMac8.chr7              C 0 N 0
s macFas5.chr7              106561753 355 - 171882078 TATTTCTTGCTTT-CC-ATGGATATAAAGCAGATTCCTGGTAGGCACATTTTGTATACCTGCAAAGATGCAGGACTAAACAGTTCCATCTGTTCAACATTGAAACAAAAGTCCTGTAAACCTCGGATGGTGAGCGCAATACTTCAGCTTTAGCCCCAAAGCCTCAAATATGAAAAGATACCAAGAACGCCACTAGCAATCAAAACTAAACTCTCgactaggagcagtagttcatgcctgtaatcccagcactttggcaaactaaggtgggaggattacttgaagtcaggagttcaagattaacctgggcagcatagcgaattcacgtctccac-aaaaaattttaaaaattagctggg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011533v1      4020761 353 +   4820037 TACTTCTTGCTTT-CC-GTAGATATAAAGCAGAGTCCTGGTAGGCACATTTTGTATGCCTGCAAAGATGCAGAACTAG--AGTTCCATCTGTTCAATATTAAAACAAAAGTCCTGTAAACCTTGGATGGTGAGTGTAATACTTCAGCACTAGCACCAAAGCCTCAAATATGAAAAGATACCAAGAACATCACTAGCAAACAAAACTAAACTGTCAgccaggagcagtagttcacacctgtaatcccagcactttggcaagccaaggtgggaggattatttgaagtcaggagttcaagactagcctgggcagcacagcaaattcacatctccac-aaaaaattttaaaaattagctggg
i macNem1.NW_012011533v1    C 0 N 0
s cerAty1.NW_011999477v1      9939067 354 +  10730278 TACTTCTTGCTTC-CC-ATAGATATAAAGCAGAGTCCTGGTAGGCACATTTTGTATGCCTGCAAAGATGCAGAACTAG--AGTTCCATCTGTTCAATATTAAAACAAAAGTCCTGTAAACCTTGGATGGTGAGTGTAATACTTCAGCACTAGCACCAAAGCCTCAAATATGAAAAGATACCAAGAACATCACTAGCAAACAAAACTAAACTCTCAgccaggagcagtagttcacacctgtaatcccagcactttggcaagccaaggtgggaggattatttgaagtcaggagttcaagactagcctgggcagcacagcaaattcacatctccacaaaaaaattttaaaaattagctggg
i cerAty1.NW_011999477v1    C 0 N 0
s chlSab2.chr29               3131226 354 +  24206276 TATTTCTTGCTTT-CC-ATGGATATAAAGCAGATTCCTGGTAGGCACATTTTGTATACCTGCAAAGATGCAGGACTAAACAGTTCCATCTGTTCAGCATTGAAACAAAAGTCCTGTAAACCTCGGATGGTGAGTGCAATACTTCAGCATTAGCCCCAAAGCCTCAAATATGAAAAGATACCAAGAACGCCACTAGCAATCAAAACTAAACTCTCAACTAggagtagtagttcatgcctgtaatcccagcactttggcaaactaaggtgggaggattacttgaagtcaggagttcaagattaacctgggcagcatagcgaattcacgtctccac-aaaaaatttt-aaaattagctggg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1065062 346 +   1458659 TACTTCTTGCTTT-TCAATGGCTATAAAGCAGACT---------CACATTTTGTATAGTTGCAAAGATGCAGACCTAAACAGTTCCATCTGTTCAATATTAAAACAAAAGTCCTGTAAACCTCAGATGGTGAGTGTAATACTTCACCATTAGCCCCAAAGCCTCAAATATGAAAAGATACCAAGAACACCACTAGCAATCGAAAGTAAACTCTTggtcgggagcactagttcatgcc-gtaatcccagcactctggcaagccaaggtgggaggattacttgaagtcaggagttcgagaccagtctgggcagcatagtgagttcacatctctac-aaaaagttttaaaaattagctggg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       268607 346 +   4111199 TACTTCTTGCTTT-TCAACGGCTATAAAGCAGACT---------CATATTTTGTATAGCTGCAAAGATGTAGACCTAAACAGTTCCATCTGTTCAATATTAAAACAAAAGTCCTGTAAACCTCAGTTGGTGAGCGTAATACTTCACCATTAGCCCCAAAGCCTCAAATATGGAAAGATACTAAGAACACCACTAGCAATCGAAACTAAACTCTTggccaggagcactagttcatgtg-gtaatcccagcactttggcaagccaaggagggaggattacttgaagtcaggagttcaagaccagtctgggcagcatagtgaattcaaatctctac-aaaaagttttaaaaattagctggg
i colAng1.NW_012116021v1    I 317 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=32566.000000
s hg38.chr15_KI270850v1_alt    140834 13 +    430880 tgtggcagcacac
s gorGor5.CYUI01015946v1        63523 13 -    378907 tgtggtggcacac
i gorGor5.CYUI01015946v1    C 0 N 0
s nomLeu3.chr6              101771479 13 + 121039945 tgtggcagcacac
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106562108 13 - 171882078 cctggtggcacac
i macFas5.chr7              C 0 T 95623
s macNem1.NW_012011056v1      6181540 13 +   6271500 tgtgtcagcacac
i macNem1.NW_012011056v1    N 0 C 0
s cerAty1.NW_012001384v1      5099310 13 +   5160157 tgtgtcagcacac
i cerAty1.NW_012001384v1    N 0 C 0
s chlSab2.chr29               3131580 13 +  24206276 cgtggtggcacac
i chlSab2.chr29             C 0 n 0
s manLeu1.NW_012105520v1      1065408 13 +   1458659 tgtgTCAGCACAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       268953 13 +   4111199 tgtgacagcacac
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=7236.000000
s hg38.chr15_KI270850v1_alt    140847 4 +    430880 TTCC
s nomLeu3.chr6              101771492 4 + 121039945 TTCC
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      6181553 4 +   6271500 TTCC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5099323 4 +   5160157 TTCC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20308620 4 -  24206276 TTTC
i chlSab2.chr29             T 85275 C 0
s manLeu1.NW_012105520v1      1065421 4 +   1458659 TTCC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       268966 4 +   4111199 TTCC
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29625737 61095 +  36342412 I
e macFas5.chr7              106562121 95623 - 171882078 T
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=1240131.000000
s hg38.chr15_KI270850v1_alt    140851 593 +    430880 TGGGGCAGATGTGCCATTGCTGGAAACTTCTCTATGGAGAG--------TACCAAGTACTTCTACC-TGTAGCATTTTCCCTGGCTGGAATCCTGCAATTATCACAGTAGCCCGAGATCCAAGAAGGCAGAGCAGGAGCATCCTGTCCCCTCCCCAGCAGGTGCAAGGGAGGCTGGGGGGTGAGGCACAAGCCCGTG-GGAGGGTGAGGAGCAGGAGGGATGCATGGTGAGCCTCTGTTGACTGCTTGCTGCCTCAGCTGGAAGGTCAGGACCAAATGTCTATTACAGGTTAA-----ATTA-----------------cagaagtatttcagattttgga--tttttttcagattttgg------------------------------------aattcgaaaatctgaaatccaaaatgctccaatgagcatttcctttgaatctggccttcgaacatcatgtcggcactcaaacagttttggattttgaagcatttcagattttggattttcggatgagggatg------ctGTATTATCTTCTGAATGAGGCCACTCATTCAGGAAAGCCCAGAGCTTGGGGACGTGGAGCTGCAGACCAAAGAGGTGATTTCTGTAGTGGCTTTCAGTGCGGAAGGGCCTACAAAGTGGTTTAAAGCAAGCCA
s nomLeu3.chr6              101771496 593 + 121039945 TGGGGCTGCTGTGCCATTGCTGGAACCTTCTCTGTGGAGAG--------TACCAGGTACTTCTACC-TGTAGCACTTTCCCTGGCTGGAATCCTACAATTGTCACAGTAGCCCAAGATCCAAGAAGGCAGGGCAGGAGCATCATGTCCCCTTCCCAGCAGGTGCAAGGGAGGCTGGGGAGTGAGGCACAAACCTGTG-GGAGGGTGAGGGGCAGGAGGGGTGCATGATGAGCCTCTGTTGACTGCTTGCTGCCTCAGCTGGAAGGTCAGGACCCAATGTCTATTACAGGTTAA-----ATTA-----------------cataagtatttcagattttgga--tttttttcagattttgg------------------------------------aattcgaaaatctgaaatccaaaatgctccaatgagcatttcctttgaaccaggacttcgaacatcatgtcggcactcaaacagttttggatgttgaagcatttcagatttgggatttttggatgagggatg------ctGTACTATCTTCTGAATGAGGCCACTCATTCAGGAAAGTCCAGAGCTTGGGGACATGGAGCTGCAGGCCAAAGAGGTGATTTCTGAAGTGGCTTTCAGTGCGGAAGGGCCTACAAAGTAGTTTAAAGCAAGCCA
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      6181557 593 +   6271500 CGGGGCTGCTGTGCCATTGCTGGAATCTGCTCTATGGAGAG--------TACTGAGTACTTCTACC-TGTAGCACTTTCCCTGGCTGGAATCCTGCAATTGTCACAGTGGCCCAAGATCCAAGAAGGCAGGGCAGAAGCATCGTGTCCCCTTCCCAGCGAGTGCAAGGGAGGCCGGGGGGTGATGCACAAGCCTGTG-GGAGGGTGAGGGGCAGGAGGGGTGCATGGTGAGCCTCTGTTGACTGCTTGCTGCGTCAGCTGGAAGGTCAGGACCCAATGTCTATTACAGGTTAA-----ATTA-----------------cagaagtatttcagatttcaga--ttttttacagattttgg------------------------------------aattcgaaaatctgaaatccaaaatgctccaatgagcatttcctttgaacctggccttcgaacatcatatcggcgctcaaacagttttggattttgaagcatttcagattttggattttcggatgagggatg------ctGTATTATCTTCTGAATGAGGCCACTCATTTAGGAAAGCCCAGAGTTTGGGGACATGGAGCTGCAGGCCAGAGAGGTGATTTCTGAGGTGGCTTCCAGTGTGGAAGGGCCTCCAAAGTGGTTTAAGGCAAGCCA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5099327 593 +   5160157 TGGGGCTGCTGTGCCATTGCTGGAATCTGCTCTATGGAGAG--------TACTGAGTACTTCTACC-TGTAGCACTTTCCCTGGCTGGAATCCTGCAATTGTCACAGTGGCCCAAGATCCAAGAAGGCAGGGCAGAAGCATCGTGTCCCCTTCCCAGCGAGTGCAAGGGAGGCTGGGGGGTGATGCACAAGCCTGTG-GGAGGGTGAGGGGCAGGAGGGGTGCATGGTGAGCCTCTGTTGACTGCTTGCTGCCTCAACTGGAAGGTCAGGACCCAATGTCTGCTACAGGTTAA-----ATTA-----------------cagaagtatttcggatttcaga--ttttttacagattttgg------------------------------------aattcgaatatctgaaatccaaaatgctccaatgagcatttcctttgaacctggccttcgaacatcatatcggcactcaaacagttttggattttgaagcatttcagattttggattttcagatgagggatg------ctGTATTATCTTCTGAATGAGGCCACTCATTTAGGAAAGCCCAGAGTTTGGGGACATGGAGCTGCAGGCCAGAGAGGTGATTTCTGAGGTGGCTTCCAGTGTGGAAGGGCCTCCAAAGTGGTTTAAGGCAAGCCG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20308624 595 -  24206276 CGGGGCTGCTGTGCCATTGCTGGAATCTGCTCTATGGAGAG--------TACTGAGTACTTCTACC-TGTAGCACTTTCCCTGGCTGGAATCCTGCAATTGTCACAGTGGCCCAAGATCCAAGAAGGCAGGGCAGAAGCATCGTGTCCCCTTCCCAGTGGGTGCAAGGGAGGCCGGGGGGTGATGAACAAGCCTGTG-GGAGGGTGAGGGGCAGGAGGGGTGCATGGTGAGCCTCTGTTGACTGCTTGCTGCCTCAACTGGAAGGTCAGGACCCAATGTCTATTACAGGTTAA-----ATTA-----------------cagaagtatttctgatttcagattttttttacagattttgg------------------------------------aattcgaaaatctgaaatccaaaatgctccaatgagcatttcctttgaacctggtcttcgaacatcatatcggcgctcaaacagttttggattttgaagcatttcagattttggattttcggatgagggatg------cCGTATTATCTTCTGAATGAGGCCACTCACTTAGGAAAGCCCAGAGTTTGGGGACATGGAGCTGCAGGCCAAAGAGGTGATTTCTGAGGTGGCTTCCAGTGTGGAAGGGCCTCCAAAGTGGTTTAAGGCAAGCCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1065425 593 +   1458659 CGGGGCTGCTGTGCCATTGCTGGAATCTGCTCTATGGAGAG--------CACTGAGTACTTCTACC-TGTAGCACTTTCCCTGGCTGGAATCCTGCAATTGTCACAGTGGTCCAAGATCCAAGAAGGCAGGGCAGAAGCATCGTGTCCCCTTCCCAGCGAGTGCAAGGGAGGCTGGGGGGTGATGCACAAGCCTGTG-GGAGGGTGAGGGGCAGGAGGGGTGCATGGTGAGCCTCTGTTGACTGCTTGCTGCCTCAACTGGAAGGTCAGGACCCAATGTCTATTACAGGTTAA-----ATTA-----------------cagaagtatttcggatttcaga--ttttttacagattttgg------------------------------------aattcgaaaatctgaaatccaaaatgctccaatgagcatttcctttgaacctggccttcgaacatcatatcggcactcaaacagctttgaattttgaagcatttcagattttggattttcagatgagggatg------ctGTATTATCTTCTGAATGAGGCCACTCATTTAGGAAAGCCCAGAGTTTGGGGACATGGAGCTGCAGGCCAGAGAGGTGATTTCTGAGGTGGCTTCCAGTGTGGAAGGGCCTCCAAAGTGGTTTAAGGCAAGCCA
i manLeu1.NW_012105520v1    C 0 M 1002
s colAng1.NW_012116021v1       268970 593 +   4111199 CAGGGCTGCTGTGCCATTTTTGGAATCTGCTCTATGGAGAG--------TATTGAGTACTTCTACC-TGTAGCACTTTCCCTGGCTAGAATCCTGCAATTGTCACAGTGGCCCGAGATCCAAGAAGGCAGGGCAGAAGCATCGTGTCCCCTTCCCAGTGGGTGCAAGGTAGGCCGGGGTGTGATGCACAAGCCTATG-GGAGGGTGAGGGGCAGGAGGGGTGCATGGTGAGCCTCTGTTGACTGCTTGCTGCCTCAGCTGGAAGGTCAGGACCCAAAGTCTATTACAGGTTAA-----ATTA-----------------cagaagtatttcagatttcaga--ttttttacagactttgg------------------------------------aattcgaaaatctgaaatccaaaatgctccaatgagcgtttcctttgaacctggccttagaacatcatatcggcgctcaaacagttttggattttgaagcatttcagattttggattttcagatgagggatg------ctGTATTATCTTCTGAATGAGGTCACTCATTTAGGAGAGCCCAGAGTTTGGGGACATGGAGCTGCAGGCCCAAGAGGTGATTTCTGAGGTGGCTTCCAGTGTGGAAGGGCCTGCAAAGTGGTTTAAGGCAAGCCA
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530           29686832 635 +  36342412 TAGGGCCACTGCACCACTGCTGAAACCTTCTCTATGAAGGGACTTTTTTAACTAAGTACTTCTACCTTGTACCGCTTTCCC---------CCCTGTGACTATTATAGTGGCCCAAGATGCAGGAAGGCAGAACAGAGGTATCATGCCCACTTTCCAGCAGGTGCAAGGGAGGCAGTCTCCT----CTTCAGCCAGTGAGGAGACTGAGGGGCAGGATGGGGGAGCAGCGGGCCTCTGCTGATGGCTCGCTGCCTCGGCTGCCAGGACAGGACCCAAT-TTTAATCCATAttgattgtccttatctgaaatgcttgggatcagaagtgatttgaatctcagg--gttttttttttttttggaatattttaaattatatttaccagctgagcatccctaatctgaaaatctgaaatcttaaatgttccaataagcatgtcctttgaacctgacctttgagtatcatgttagtactgataaatttttgggtttgggagaatttaggattaggaatttttgtattagagatgctcaacctgTATTATCTTCT------------CCGTTCAGGAGACCCCAGGGTTGGGGGAGATGGAGCCGCAGGCCAAACAG--GATTTCTGAGGCTCCTCCCACTGCAGAAGGGCCT---AAGTAG-TTAAAGCAGCCCA
i otoGar3.GL873530          I 61095 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e macFas5.chr7              106562121 95623 - 171882078 T
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=478953.000000
s hg38.chr15_KI270850v1_alt    141444 365 +    430880 CAAAATAGGAAACCCAATATTTAGCTAATGGAACTCTGATAAAACCTGCTCAAGATGTCTGT-CTCTACTAATTCAGATGGAGCCAAGCCAAAGCATCATTATTATTTTAAA--------------AAGGCACCAATCCCTCTGCAAAAGCACTGAATTATATCATGATACAATCATCAATTGTACCATGAATCACCATCAGCGGTGGTCTTTTAGGGATATGAAGAAGGGGTTTTCACAATACATCGCATGACACACCATCTTCCAAA---TCTCTAAACATTTCTCTCCAC-AGCCCAGTCCTCTCCATAGTTGTCCAAATCCC--TCCCTCTTTTCTCTTGTTGTCTC-CAAAACTCAAA-ACCATGCTCTGACTTTCTATATCC
s nomLeu3.chr6              101772089 339 + 121039945 CAAAATAGGAAACCCAATATTTAGCTAATGGAACACTGATAAAACCTGCTCAAGATGTCTGT-CTCTACTAATTCAGATGGAGCCAAGCCAACGCATCATTACTATTTTAAA--------------AAGGCACCAATCCCTCTGCAAAAGCACTGAATTGTAT-----------------------CATGAATCACCATCAGTGGTGGTTTTTTAGGGATATGAAGAAGGGGTTTTCACAATACATCGCACGACACACCATCTTCCAAA---TCTCTAAACATTTCTCTCCAC-AGCCCAGTCCTCTCCATAGTTGTCCAAATCCC--TCCCTCTTTTCTC---TTGTCTC-CAAAACTCAAA-ACCATGCTCTGACTTTCTATATCC
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      6182150 334 +   6271500 CAAAATAGGAAACCTAATATTTAGCTAATGGAACACTGATAAAACCTGCTCAAGATGTCTG---TCTACTAACACAAATGGAGCCAAGCCAATGCATTATTATCATTTGAAA--------------AAGGCACCAATCCCTCTGCAAAAGTACTGAATTGTAT-----------------------CATGAAT---CATCGCTGGTGGTTTTTTACGGATATA---AAGGTGTTTTCACAATAGATCGCTCAACACACTATCTTCCAAA---TCTCTAAACATTTCTCTCCCC-AGCCCAGTCTTCTCCATAGTTGTCCAAATCCC--CCCCTCTTTTCTCTTGTTGTCTC-CAAAACTCAAA-ACCATGCTCTGACTTTCTGTATCC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5099920 338 +   5160157 CAAAATAGGAAGCCTAATATTTAGCTAATGGAACACTGATAAAACCTGCTCAAGATGTCTG---TCTACTAACACAGATGGAGCCAAGCCAATGCATTATTATcatttgaaa--------------aaggcaccaatccctctgcaaaagcattgaattgtat-----------------------catgaat---catcgctggtggttttttagggatataaagaaggtgttttcacaatagatcgcacaacacattatcttccaaa---tctctaaacatttctctcCCC-AGCCCAGTCTTCTCCATAGTTGTCCAAATCCC--CCCCTC-TTTCTCTTGTTTTCTCAAAAAACTCAAATACCAGCCTCTGACTTTCTGTATCC
i cerAty1.NW_012001384v1    C 0 I 203
s chlSab2.chr29              20309219 337 -  24206276 CAAAATAGGAAACCTAATATTTAGCTAATGGAACACTGATAAAACCTGCTCAAGATGTCTG---TCTACTAACACAGAtggagccaagccaacgcattattatcatttgaaa--------------aaggcaccaatccctctgcaaaagcactgaattgtat-----------------------catgaat---catcgctggtggttttttagggatataaagaaggtgttttcacaatagatcacacaacacactatcttccaaa---tctctaaacatttctctcccc-agcccagtcttctccatagttgtccaaatccc--ccgctcttttctcttgttgtctc-caaaactcaaa-accatgctctgactttctgtatcc
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       269563 335 +   4111199 CAAAATAGGAAACTCAATATTTAGCTAATGGAACACTGATAAAACCTGCTCAAGATGTCTG---TCTACTAACACAGATGGAGCCAAGCCAATGCATTATTATCATTTTAAA--------------AAGGCACCAATCCCTCTGTAAAAGCACTGAATTGTAT-----------------------CATGAAT---CATCGGTGGTGGTTTTTTAGGGATATAAAGAAGGTGTTTTCACAATAGCTCGCACGACACACTATCTTCCAAA---TCTCTAAACATTTCTCTCCCC-AGCCTAGTCCTCTCCATAGTTGTCCAAATCCC--CCCCT--TTTCTCTTGTTGTCTC-CAAAACTCAAA-ACCATGCTCTGACTTTCTTTATCC
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530           29687467 344 +  36342412 CAAAATAGGAAACCCAGTATTTAGCTAATGGAACACAGACAGAACCTACTAAAGATGTCTGTGCCTGACTAATTCAATTGGAGCCAAATCAAC------TTGGTATCTGAAAAAAAAAAGAAAAAGAAGACACCAATCTGACTGCAAAAGCCCTGAAATGTAA-----------------------CATGAAT--GGGCCAGTGGTGGTTTCTTAGGGAGACGGAGGAGGAGTTTTCGTGATATATCACACAACAAAACATCTCCCCAACCTCCTCTAGACA-TTCTCTCCACAAGCCCTGCCCTTCCACTAGTTGCCCACATCTCTGCTCCTCTTTTCTCTTGCTCTCTG-------TTCAA-ACTGTTCT----CTTTCTGTATCC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e manLeu1.NW_012105520v1      1066018 1002 +   1458659 M
e macFas5.chr7              106562121 95623 - 171882078 T
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=39843.000000
s hg38.chr15_KI270850v1_alt    141809 34 +    430880 CGCCCTCCTCTTCTTGGACCATCTGGGAAGCCCC
s nomLeu3.chr6              101772428 34 + 121039945 CGCCCTCTGCTTCTTGGACCACCTGGGAAGCCCC
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      6182484 34 +   6271500 TGCCCTCCCCTTCTTGGACCACCTGGGAAGCCCC
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20309556 34 -  24206276 tgccctccccttcttggaccacctgggaagcccc
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       269898 34 +   4111199 TGCCCTCCCCTTCTTGGACCACCTGGGAAGCCCC
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530           29687811 34 +  36342412 CGTCCTTCCCTTCTTAGCCCTGCTGGGGAGCCCC
i otoGar3.GL873530          C 0 n 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e manLeu1.NW_012105520v1      1066018 1002 +   1458659 M
e cerAty1.NW_012001384v1      5100258 203 +   5160157 I
e macFas5.chr7              106562121 95623 - 171882078 T
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=99032.000000
s hg38.chr15_KI270850v1_alt    141843 117 +    430880 CTGCTTCCCCAGGGTGTCCCCTCCTCCCCTTCTGGGATCAGTCATCTTTCCTCAAATGGACCAGTTCGGCCTCTCTTAGTTTCTCCAACTCTGCATCTCAACCTTTCTCCCTTCACT
s nomLeu3.chr6              101772462 117 + 121039945 CCGCTTCCCCGGGGTGTCCCCTCCTCCCCTCCTGGGATCACTCATCTTTCCTCAAATGGACCAGTTTGGCCTCTCTTAGTTTCTGCAACTCTGCATCTCAACCTTTCTCCCTTCACT
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      6182518 117 +   6271500 CTGATTCCCCAGGGTGTCCCCTTCTTCCCTCCTGGGATCCCTGATCTTTCCTCAAATGGAGCAGTTTGGCCTCTCTTAGTTTCTCCAACTCTGCATCTCAACCTTTCTTCCTTCACT
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20309590 117 -  24206276 ctggttccccagggtgtcccctcgtcccctcctgggatccctgatctttcctcaaatggagcagtttggcctctcttagtttctccaactctgcatctcaacctttcttccttcact
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       269932 117 +   4111199 CTGGTTCCCCAGGGTGTCCCCTCCTCCCCTCCTGGGATCCCTGATCTTTCCTCAAATGGACCAGTTTGGCCTCTCTTAGTTTCTCCAACTCCGCGTCTCAACCTTTCTTCCTTCACT
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e manLeu1.NW_012105520v1      1066018 1002 +   1458659 M
e cerAty1.NW_012001384v1      5100258 203 +   5160157 I
e macFas5.chr7              106562121 95623 - 171882078 T
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=23495.000000
s hg38.chr15_KI270850v1_alt    141960 17 +    430880 ACACAATAATGTCCAGG
s nomLeu3.chr6              101772579 17 + 121039945 ATACAATAATGTCCAGG
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      6182635 17 +   6271500 ACACAATAATGTCCAGG
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20309707 17 -  24206276 acacaataatgtccagg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1067020 17 +   1458659 ACACAATAATGTCCAGG
i manLeu1.NW_012105520v1    M 1002 C 0
s colAng1.NW_012116021v1       270049 17 +   4111199 ACACAATAATGTCCAGG
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e cerAty1.NW_012001384v1      5100258 203 +   5160157 I
e macFas5.chr7              106562121 95623 - 171882078 T
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=75387.000000
s hg38.chr15_KI270850v1_alt    141977 39 +    430880 AGGCAAAGAGCCCACAAACCTGGGAACCTCCCTTTCCAG
s nomLeu3.chr6              101772596 39 + 121039945 AGGCAAAGAGACCACAAACCAGGGAACCTCCCTTTCCAG
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      6182652 39 +   6271500 AGGCAAAGAGCCCACAAACCAGGGAACCTCCCTTTCCAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5100461 39 +   5160157 AGGCAAAGAGCCCACAAACCAGGGAACCTCCCTTTCCAG
i cerAty1.NW_012001384v1    I 203 I 16
s chlSab2.chr29              20309724 39 -  24206276 aggcaaagagcccacaaaccagggaacctccctttccag
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1067037 39 +   1458659 AGGCAAAGAGCCCACAAACCAGGGAACCTCCCTTTCCAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       270066 39 +   4111199 AGGCAAAGAGCCCACAGACCAGGGAACCTCCCTTTCCAG
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e macFas5.chr7              106562121 95623 - 171882078 T
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=9976.000000
s hg38.chr15_KI270850v1_alt    142016 16 +    430880 AAGGGAGGTTCTGGAA---
s nomLeu3.chr6              101772635 12 + 121039945 AAGGGAAG----AGAG---
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      6182691 15 +   6271500 AAGGGAGG----AGAGAGG
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20309763 15 -  24206276 aagggagg----agagagg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1067076 15 +   1458659 AAGGGAGG----AGAGAGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       270105 15 +   4111199 AAAGGAGG----AGAGAGG
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e cerAty1.NW_012001384v1      5100500 16 +   5160157 I
e macFas5.chr7              106562121 95623 - 171882078 T
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=56074.000000
s hg38.chr15_KI270850v1_alt    142032 34 +    430880 T---GACTACAAATATTTGGTTATGATTTTCTTCCCT
s nomLeu3.chr6              101772647 37 + 121039945 AGGGGACTACAAATATTTGGTTGTGATTTTCTTCCCT
i nomLeu3.chr6              C 0 I 319
s macNem1.NW_012011056v1      6182706 34 +   6271500 ---TGACTACAAATATATGGTTATGATTTTCTTCCCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5100516 34 +   5160157 ---TGACTACAAATATATGGTTATGATATTCTTCCCT
i cerAty1.NW_012001384v1    I 16 C 0
s chlSab2.chr29              20309778 34 -  24206276 ---tgaCTACAAATATGTGGTTATGATTTTCTTCCCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1067091 34 +   1458659 ---TGACTACAAATATATGGTTATGATTTTCTTCCCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       270120 34 +   4111199 ---TGACTACAAATATATGGTTATGAGTTTCTTCCCT
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e macFas5.chr7              106562121 95623 - 171882078 T
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=45932.000000
s hg38.chr15_KI270850v1_alt    142066 31 +    430880 GCCACGCCTGTTTTCATGGGCAGTGCTGAGC
s nomLeu3.chr6              101773003 31 + 121039945 GCCACGCCCGTTTTCATGGGCAGTGCTGAGT
i nomLeu3.chr6              I 319 C 0
s macNem1.NW_012011056v1      6182740 31 +   6271500 GGCATGACTGTTTCCATGGGCAGCGCTAAGC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5100550 31 +   5160157 GGCACGACTGTTCGCATGGGCAGCGCTGAGC
i cerAty1.NW_012001384v1    C 0 I 1012
s chlSab2.chr29              20309812 31 -  24206276 GGCATGACTGTTTCCATGGGCAGTGCTAAGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1067125 31 +   1458659 GGCATGACTGTTTCCATGGGCAGCGCTAAGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       270154 31 +   4111199 GGCACCACTGTTTCCAAGGGCGGCGCTGAGC
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e macFas5.chr7              106562121 95623 - 171882078 T
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=126338.000000
s hg38.chr15_KI270850v1_alt    142097 106 +    430880 CCCGGTCCTGGCAGAGCTCAGAACCAGGCTCTCATGAGCTGGGGCAAGTGGGGCCTAGGGAACCTCTGGGTTGAGGACCTTGCACCCCACTCTGCAGCTGCCCTGC
s nomLeu3.chr6              101773034 106 + 121039945 CCCCGTCCTGGCAGAGCTCAGAACCAGGCTCTCATGAGCTGGGGCAAGTGGGGCCTAGGGAGCATCTGGGTTGAGGACCTTGTATCTCACTCTGCAGCTGCCCTGC
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      6182771 106 +   6271500 CCCAGTCCTGGCATACCTCAGAACCAGGCTCTCTTGAGCTGGAGCAAGTGGGGCCTAGGGAGTCTCTGGGTTGAAGATCTTGCGTACTACTCTGCAACTGCCCTGC
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20309843 106 -  24206276 CCCAGTCCTGGCATACCTCAGAACCAGTCTCTCTTGAGCTGGAGCAAGTGGGGCCTAGGGAGTCTCTGGGTTGAGGATCTGGCATACTACTTTGCAACTGCCCGGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1067156 106 +   1458659 CCCAGTCCTGGCAGACCTCAGAACCAGGCTCTCTTGAGCTGGAGCAAGTGAGGCCTAGGGAGTCTCTGGGTTGAAGATCTTGCGTACTACTCTGCAACTGCCCTGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       270185 106 +   4111199 CCCGGTCCTGGCAGACCTCAGAACCAGGCCCTCATGAGCTGGGGCAAGTGGGTCCTAGGGAGCCTCTGGGTTGAGGATCTTGAGTACTACTCTGCAACTGCCCTGC
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e cerAty1.NW_012001384v1      5100581 1012 +   5160157 I
e macFas5.chr7              106562121 95623 - 171882078 T
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=58828.000000
s hg38.chr15_KI270850v1_alt    142203 28 +    430880 TGATTTggctca-tgcaacctct-cctcct
s panTro5.chr15              66048879 30 +  83230942 tgatttggctcactgcaacctctgcctcct
i panTro5.chr15             N 0 C 0
s gorGor5.CYUI01015946v1       153977 30 +    378907 tgatttggctcactgcaacctctgcctcct
i gorGor5.CYUI01015946v1    N 0 C 0
s nomLeu3.chr6              101773140 30 + 121039945 TGATTTggctcactgctacctctgcctccc
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      6182877 29 +   6271500 TGATTTggctcactgcaacctctgcctca-
i macNem1.NW_012011056v1    C 0 I 1
s chlSab2.chr29              20309949 29 -  24206276 TGATTTggctcactgcaacctctgcctca-
i chlSab2.chr29             C 0 I 1
s manLeu1.NW_012105520v1      1067262 29 +   1458659 TGATTTggctcactgcaacctctgcctca-
i manLeu1.NW_012105520v1    C 0 I 1
s colAng1.NW_012116021v1       270291 29 +   4111199 TGATTTggctcactgcaacctctgcctca-
i colAng1.NW_012116021v1    C 0 I 1
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e cerAty1.NW_012001384v1      5100581 1012 +   5160157 I
e macFas5.chr7              106562121 95623 - 171882078 T
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=15728.000000
s hg38.chr15_KI270850v1_alt    142231 6 +    430880 gggctc
s panTro5.chr15              66048909 6 +  83230942 gggctc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       154007 6 +    378907 gggctc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101773170 6 + 121039945 gggctc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106466498 6 - 171882078 cggctc
i macFas5.chr7              T 95623 C 0
s macNem1.NW_012011056v1      6182907 6 +   6271500 cggctc
i macNem1.NW_012011056v1    I 1 C 0
s chlSab2.chr29              20309979 6 -  24206276 cggctc
i chlSab2.chr29             I 1 C 0
s manLeu1.NW_012105520v1      1067292 6 +   1458659 cagctc
i manLeu1.NW_012105520v1    I 1 C 0
s colAng1.NW_012116021v1       270321 6 +   4111199 gggctc
i colAng1.NW_012116021v1    I 1 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e cerAty1.NW_012001384v1      5100581 1012 +   5160157 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=519155.000000
s hg38.chr15_KI270850v1_alt    142237 145 +    430880 aagcgatccttctacatcggtctcccaagtagctgggatttgggctaccacgtttggctaatttttgtatcttttagtacagatggggtttcacctgtagcccaggctggtctcgaa-tcctgggctctagtgatctaccctcctc
s panTro5.chr15              66048915 146 +  83230942 aagcaatccttccacctgagcctcccaagtagctaagatttgggctaccatgcttggctaatttttgtatttgttagtacagatggggtttcaattgatgcccaggctggtctcgaactcctgggctcgagcaatctgtcctcctc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       154013 146 +    378907 aagcaatccttccacctgagcctcccaagtagctaagatttgggctaccatgcttggctaatttttgtatttgttagtacagatggggtttcagttgatgcccaggctggtctcgaactcctgtgctcaagcaatctgccctcctc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101773176 146 + 121039945 aagcaatccttctacctcggcctcccaagtagctgggatttgggctaccacgtttggctaatttttgtatcttttagtgcagacggggtttcacctgtagcccaggctggtctcgaactcctgggcttgagtgatctaccctcctc
i nomLeu3.chr6              C 0 I 7475
s macFas5.chr7              106466504 146 - 171882078 aagtgatccttctacctcggcctcccaagtagctgggatttgggctaccatgcttggctaatttttgtatcttttagtacagacggggtttcccctgtagcccaggctggtctcgaactcctggactcgagtgatttatcctcctc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6182913 146 +   6271500 aagtgatccttctacctcggcctcccaagtagctgggatttgggctaccatgcttggctaatttttgtatcttttagtacagacggggtttcccctgtagcccaggctggtctcgaactcctggactcgagtgatttatcctcctc
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20309985 146 -  24206276 aagtgatccttctacctcggcctcccaagtagctgggatttgggctaccatgcttggctaatttttgtatcttttagtacagacggggtttcccctgtagcccaggctggtctcgaactcctggactcgagtgatttatcctcctc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1067298 146 +   1458659 aagtgatccttctacctcggcctcgcaagtagctgggatttgggctaccatgcttggctaatttttgtatcttttagtacagacggggtttcccctgtagcccaggctggtctcgaactcctggactcgagtgatttatcctcctc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       270327 146 +   4111199 aagtgatccttctacctcggcctcccaagtagctgggatttgggctaccatgcttggctaatttttgtattttttggtacagacggggcttcacctgtagcccaggctggtcttgaactcctggacttgactgatttaccctcctc
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      2933323 143 -  42888418 aagtgatccttctacctcagtctcccaagtagctgggatttgggctaccacccttggctaatttttgtattttttagtacagatagggtttcacctgttgcccaggctggtctcgaaatcctgggctggagtgctcagccctc---
i aotNan1.NW_018505940v1    N 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e cerAty1.NW_012001384v1      5100581 1012 +   5160157 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=191702.000000
s hg38.chr15_KI270850v1_alt    142382 63 +    430880 agcctcccaaagtgctgggattacaggtgtgagccactgcgcccggccTTgtgccagctttta
s panTro5.chr15              66049061 63 +  83230942 agcctcccaaagtgctgggattacaggtgtgagccaccgcaccaggccTTgtgccagttttta
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       154159 63 +    378907 agcctcccaaagtgctgggattacaggtgtgagccaccgcgccaggACTTgtgccagttttta
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106466650 63 - 171882078 agcctcccaaagtgctgggattacaggtgtgagccgctgtgcctggccTTGTGCCAGCTTTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6183059 63 +   6271500 agcctcccaaagtgctgggattacaggtgtgagccgctgtgcctggccTTGTGCCAGCTTTTA
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20310131 63 -  24206276 agcctcccaaagtgctgggattacaggtgtgagccactgcacccggccTTGTGCTAGCTTTTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1067444 63 +   1458659 agcctcccaaagtgctgggattacaggtgtgagccgctgcgcccggccTTGTGCCAGCTTTTA
i manLeu1.NW_012105520v1    C 0 I 75
s colAng1.NW_012116021v1       270473 63 +   4111199 agcctcccaaagtgctgggattacaggtgtgagccgctgtgcctggccTTgtgccagctttta
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      2933466 63 -  42888418 agcctcccaaagtgctcagattacaggtgtgagccatcacatccagcTTTGTGCCAGCTTTTA
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e cerAty1.NW_012001384v1      5100581 1012 +   5160157 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=317888.000000
s hg38.chr15_KI270850v1_alt    142445 109 +    430880 aatatcaacaaggacaaattagagaacagtggaagagggtgagcagcatgatgaggtgatacagaaataattt-cacatgaagaacTGGGCATGCCTGGCTTTT-----------------------TTTTTT
s panTro5.chr15              66049124 115 +  83230942 aaaatcaacaaggacagattagagaacagtggaagagggtgagcagcatgatgaagtgatacagaaataattt-cacatgaagaactgggcatgtttggcctTTCTTTTC-----------------TTTTTT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       154222 132 +    378907 aaaatcaacaaggacagattagagaacagtggaagagggtgagcagcatgatgaagtgatacagaaataattt-cacatgaagaactgggcatgcttggcctttcttttcttttcttttcttttttttttttt
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106466713 109 - 171882078 AATATCAACAAGGACAGATTAGAGAACAGTGGAAGAGGGTGAGCAGCATGATAAGGTGATACAGAAATAATTT-CACATGAAGAACTGGGCATGCTTGACCttt-----------------------tttttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6183122 109 +   6271500 AATATCAACAAGGACAGATTAGAGAACAGTGGAAGAGGGTGAGCAGCATGATAAGGTG-TACAGTAATAATTTCCACATGAAGAACTGGGCATGCTTGACCttt-----------------------tttttt
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20310194 109 -  24206276 AATATCAACAAGGACAGATTAGAGAACAGTGGAAGAGGGTGAGCAGCATGATGAGGTGATACAGAAATAATTT-CACATGAAGAACTGGGCATGCTTGACCttt-----------------------tttttt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       525497 109 -   1458659 AATATCAACAAGGACAGATTAGAGAACAGTGGAAGAGGGTGAGCAGCACGATGAAGTGATACGGAAATATTTT-CACATCAACAACTGGGCATGTTTGACCCTT-----------------------TTTTTT
i manLeu1.NW_012105520v1    n 75 C 0
s colAng1.NW_012116021v1       270536 108 +   4111199 aataccaacaaggacagattagagaacagcagaagagggtgagcagcatgatgaggtgatacagaaataattt--acatgaagaacTGGGCATGCTTGACTTTT-----------------------TTTTTT
i colAng1.NW_012116021v1    C 0 I 326
s aotNan1.NW_018505940v1      2933529 109 -  42888418 AATATCAACAAGGACAGATTAGAGAACAGTGGAAGAGGGTAAGCAGCATGATGAGGTGATACAGAAATAATTT-CACATGAAGAACTGGGCATGCTTGGCCTTT-----------------------TTTTTT
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e cerAty1.NW_012001384v1      5100581 1012 +   5160157 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=6770.000000
s hg38.chr15_KI270850v1_alt    142554 4 +    430880 TTTT
s panTro5.chr15              66049239 4 +  83230942 TTTA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       154354 4 +    378907 tttA
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106466822 4 - 171882078 tttt
i macFas5.chr7              C 0 I 17
s macNem1.NW_012011056v1      6183231 4 +   6271500 tttt
i macNem1.NW_012011056v1    C 0 I 353
s chlSab2.chr29              20310303 4 -  24206276 tttt
i chlSab2.chr29             C 0 I 337
s manLeu1.NW_012105520v1       525606 4 -   1458659 TTTT
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018505940v1      2933638 4 -  42888418 TTCT
i aotNan1.NW_018505940v1    C 0 I 59
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e colAng1.NW_012116021v1       270644 326 +   4111199 I
e cerAty1.NW_012001384v1      5100581 1012 +   5160157 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=1820.000000
s hg38.chr15_KI270850v1_alt    142558 2 +    430880 AA
s panTro5.chr15              66049243 2 +  83230942 AA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       154358 2 +    378907 AA
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106466843 2 - 171882078 AA
i macFas5.chr7              I 17 C 0
s manLeu1.NW_012105520v1       525610 2 -   1458659 AA
i manLeu1.NW_012105520v1    C 0 I 49
e aotNan1.NW_018505940v1      2933642 59 -  42888418 I
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e colAng1.NW_012116021v1       270644 326 +   4111199 I
e chlSab2.chr29              20310307 337 -  24206276 I
e cerAty1.NW_012001384v1      5100581 1012 +   5160157 I
e macNem1.NW_012011056v1      6183235 353 +   6271500 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=3980.000000
s hg38.chr15_KI270850v1_alt    142560 9 +    430880 GCTATTCTG
s panTro5.chr15              66049245 9 +  83230942 GCCATTCGG
i panTro5.chr15             C 0 I 42
s gorGor5.CYUI01015946v1       154360 9 +    378907 GCCATTCGG
i gorGor5.CYUI01015946v1    C 0 I 22
s macFas5.chr7              106466845 9 - 171882078 GCCATTCTG
i macFas5.chr7              C 0 C 0
e aotNan1.NW_018505940v1      2933642 59 -  42888418 I
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e colAng1.NW_012116021v1       270644 326 +   4111199 I
e manLeu1.NW_012105520v1       525612 49 -   1458659 I
e chlSab2.chr29              20310307 337 -  24206276 I
e cerAty1.NW_012001384v1      5100581 1012 +   5160157 I
e macNem1.NW_012011056v1      6183235 353 +   6271500 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=2102.000000
s hg38.chr15_KI270850v1_alt    142569 25 +    430880 GGTTGGATGCTGAGGCTCACACCTG
s gorGor5.CYUI01015946v1       154391 20 +    378907 ggtcgggtgcggtggctcat-----
i gorGor5.CYUI01015946v1    I 22 C 0
s macFas5.chr7              106466854 20 - 171882078 ggctgggcacaggggctcat-----
i macFas5.chr7              C 0 C 0
e aotNan1.NW_018505940v1      2933642 59 -  42888418 I
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e colAng1.NW_012116021v1       270644 326 +   4111199 I
e manLeu1.NW_012105520v1       525612 49 -   1458659 I
e chlSab2.chr29              20310307 337 -  24206276 I
e cerAty1.NW_012001384v1      5100581 1012 +   5160157 I
e macNem1.NW_012011056v1      6183235 353 +   6271500 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I
e panTro5.chr15              66049254 42 +  83230942 I

a score=-31.000000
s hg38.chr15_KI270850v1_alt    142594 1 +    430880 T
s manLeu1.NW_012105520v1       525661 1 -   1458659 c
i manLeu1.NW_012105520v1    I 49 C 0
e aotNan1.NW_018505940v1      2933642 59 -  42888418 I
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e colAng1.NW_012116021v1       270644 326 +   4111199 I
e chlSab2.chr29              20310307 337 -  24206276 I
e cerAty1.NW_012001384v1      5100581 1012 +   5160157 I
e macNem1.NW_012011056v1      6183235 353 +   6271500 I
e macFas5.chr7              106466874 0 - 171882078 C
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I
e gorGor5.CYUI01015946v1       154411 0 +    378907 C
e panTro5.chr15              66049254 42 +  83230942 I

a score=5.000000
s hg38.chr15_KI270850v1_alt    142595 2 +    430880 AA
s manLeu1.NW_012105520v1       525662 2 -   1458659 at
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018505940v1      2933701 2 -  42888418 ac
i aotNan1.NW_018505940v1    I 59 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e colAng1.NW_012116021v1       270644 326 +   4111199 I
e chlSab2.chr29              20310307 337 -  24206276 I
e cerAty1.NW_012001384v1      5100581 1012 +   5160157 I
e macNem1.NW_012011056v1      6183235 353 +   6271500 I
e macFas5.chr7              106466874 0 - 171882078 C
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I
e gorGor5.CYUI01015946v1       154411 0 +    378907 C
e panTro5.chr15              66049254 42 +  83230942 I

a score=3443.000000
s hg38.chr15_KI270850v1_alt    142597 3 +    430880 gcc
s panTro5.chr15              66049296 3 +  83230942 gcc
i panTro5.chr15             I 42 C 0
s gorGor5.CYUI01015946v1       154411 3 +    378907 gcc
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106466874 3 - 171882078 gcc
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       525664 3 -   1458659 acc
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018505940v1      2933703 3 -  42888418 acc
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e colAng1.NW_012116021v1       270644 326 +   4111199 I
e chlSab2.chr29              20310307 337 -  24206276 I
e cerAty1.NW_012001384v1      5100581 1012 +   5160157 I
e macNem1.NW_012011056v1      6183235 353 +   6271500 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=2548.000000
s hg38.chr15_KI270850v1_alt    142600 1 +    430880 t
s panTro5.chr15              66049299 1 +  83230942 t
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       154414 1 +    378907 t
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106466877 1 - 171882078 t
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6183588 1 +   6271500 t
i macNem1.NW_012011056v1    I 353 C 0
s chlSab2.chr29              20310644 1 -  24206276 t
i chlSab2.chr29             I 337 C 0
s manLeu1.NW_012105520v1       525667 1 -   1458659 t
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018505940v1      2933706 1 -  42888418 t
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e colAng1.NW_012116021v1       270644 326 +   4111199 I
e cerAty1.NW_012001384v1      5100581 1012 +   5160157 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=25119.000000
s hg38.chr15_KI270850v1_alt    142601 8 +    430880 gtaatccc
s panTro5.chr15              66049300 8 +  83230942 gtaatccc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       154415 8 +    378907 gtaatccc
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106466878 8 - 171882078 gtaatccc
i macFas5.chr7              C 0 I 291
s macNem1.NW_012011056v1      6183589 8 +   6271500 gtaatcct
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20310645 8 -  24206276 gtaatcct
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       525668 8 -   1458659 gtaatccc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       270970 8 +   4111199 gtaatcct
i colAng1.NW_012116021v1    I 326 C 0
s aotNan1.NW_018505940v1      2933707 8 -  42888418 gtaatccc
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e cerAty1.NW_012001384v1      5100581 1012 +   5160157 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=109354.000000
s hg38.chr15_KI270850v1_alt    142609 36 +    430880 agcactttgggaggccgaggtgggtggatcacctga
s panTro5.chr15              66049308 36 +  83230942 agcaatttgggaggccgaggtgggtggagcacctga
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       154423 36 +    378907 agcaatttgggaggccgaggtgggtggagcacctga
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106467177 36 - 171882078 agcactttgggaggccgaggcaggtggatcacctga
i macFas5.chr7              I 291 C 0
s macNem1.NW_012011056v1      6183597 36 +   6271500 agcactttgggaggccgaggcaggtggatcacctga
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20310653 36 -  24206276 agcactttgggaggccgaggcaggtggatcacctga
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       525676 36 -   1458659 agcactttgggaggccaaggtgggtggatcacctga
i manLeu1.NW_012105520v1    C 0 I 40
s colAng1.NW_012116021v1       270978 36 +   4111199 agcgctttgggaggccgaggcaggtggatcacctga
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      2933715 36 -  42888418 agcacattgggaggctgaggcaggtggatcacctga
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e cerAty1.NW_012001384v1      5100581 1012 +   5160157 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=8893.000000
s hg38.chr15_KI270850v1_alt    142645 4 +    430880 agtc
s panTro5.chr15              66049344 4 +  83230942 ggtc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       154459 4 +    378907 ggtc
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106467213 4 - 171882078 agtc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6183633 4 +   6271500 agtc
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20310689 4 -  24206276 agtc
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       271014 4 +   4111199 agtc
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      2933751 4 -  42888418 ggtc
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e manLeu1.NW_012105520v1       525712 40 -   1458659 I
e cerAty1.NW_012001384v1      5100581 1012 +   5160157 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=518910.000000
s hg38.chr15_KI270850v1_alt    142649 219 +    430880 aggagtttga-gaccagcctggccaacat-ggtgaaaccctgtctctactaaaaatac-aaaaaattagctggaattggtggcatgtgcctgtaattccagctactc-gggcagctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgagctgatatcgtgccattgcactccagcctgggcaacaagagtgaaactctgcctcaaaaaaa
s panTro5.chr15              66049348 218 +  83230942 aggagtttga-gaccagcctggccaacgt-ggtgaaacactgtctctactaaaaata--aaaaaattagccgggtgtggtggtgggtacctgtaatcccagctactt-gggaggctgaggcaggagaattgcttgaaccctggaggtggaggttacagtgagctgagattgcaccattgcactccagcctgggcaacaagagtgaaactctgcctcaaaaaaa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       154463 218 +    378907 aggagtttga-gaccagcctggccaacat-ggtgaaacactgtctctactaaaaata--aaaaaattagctgggtgtggtggtgggtacctgtaatcccagctactt-gggaggctgaggcaggagaatcgcttgaaccctggaggtggaggttacagtgagctgagattgcactattgcactctagcctgggcaacaagagtgaaactctgcctcaaaaaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106467217 211 - 171882078 aggagttcga-gaccagcctagtcaacat-ggtgaaaccccatttctactaaaaatac-aatacattagccgggcatggtggcgtgtgcttgtaattccagctactc-gggcagctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgagctgatatcggaccattgcactccagcctgggcaac--gagtgaaactccgcttcc------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6183637 214 +   6271500 aggagttcgaggaccagcctagtccacatgggtgaaaccccatttctactaaaaatac-aatacatt-gccgggcatggtggcgtgtgcttgtaattcc-gctactcagggcagctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgagctgatatcggaccattgcactccagcctgggcaac--gagtgaaactccgcttccaa----
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20310693 216 -  24206276 aggagttcga-gaccagcctagtcaacat-ggtgaaaccccatttctactaaaaatac-aatacattagccgggcatggtggcatgtgcttgtaattccagccactc-gggcagctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgagctgatatcggaccattgca-tccagcctgggcaac--gagtgaaactctgcttccaaaaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       525752 219 -   1458659 aggagtttca-gaccagcctggccaacat-ggtgaaacaccgtctctactaaaaataa-aaaaaattaaccaggtgtggtggtggatgcctgtaatcccagttactt-gggaggctgaggcaggagaatcgtttgaaccctggaagtggaggttacagtgagctgagatcgcaccattgcactccagcctgggcaacaagagagaaactctgcctcaaaaaaa
i manLeu1.NW_012105520v1    I 40 C 0
s colAng1.NW_012116021v1       271018 215 +   4111199 aggagttcaa-gaccagcctggtcaacat-ggtgaaac-cgatctccactaaaaatac-aaaaaattagccgggcatggtggtgtgtgcttgtaattccagctactc-gggcagctgaggcaggagaattgcttcatcctgggaggtggaggttgcagtgagctgataccgcccca-tgcactccagcctgggcaac--gagtgaaactctgcctccaaaaaa
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      2933755 198 -  42888418 aggagttcga-gaccagcttggccaacat-ggtgagacctcgtctccacaaaaaatacaaaaaaattaacctggcgtggtggtgtgctcctgtaatcccagctattt-gggtgggtgaggcaggagaattgcttgaatctgggagg---------cagtgagccaagatcgcttcattgcattccagcctgggcaacaagag-------------caaaaaaa
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e cerAty1.NW_012001384v1      5100581 1012 +   5160157 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=18855.000000
s hg38.chr15_KI270850v1_alt    142868 8 +    430880 aaaaaaaa
s panTro5.chr15              66049566 8 +  83230942 aaaaaaaa
i panTro5.chr15             C 0 I 2913
s gorGor5.CYUI01015946v1       154681 8 +    378907 aaaaaaaa
i gorGor5.CYUI01015946v1    C 0 I 6
s macFas5.chr7              106467428 5 - 171882078 ---aaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6183851 8 +   6271500 aaaaaaaa
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5101593 8 +   5160157 AAAAAAAA
i cerAty1.NW_012001384v1    I 1012 C 0
s chlSab2.chr29              20310909 5 -  24206276 ---aaaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       525971 5 -   1458659 ---aaaaa
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018505940v1      2933953 8 -  42888418 aaaaaaaa
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e colAng1.NW_012116021v1       271233 0 +   4111199 C
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=118484.000000
s hg38.chr15_KI270850v1_alt    142876  59 +    430880 aagaaag------------------------------------------------------------aaagaa-------a-aGAAAATATATCTATGCACCAGAGCTCAACACTAGGTTAGGAGCA
s panTro5.chr15              66052487  55 +  83230942 aaaaaag------------------------------------------------------------aaaaaa-------agagaaaaTATATGTGAGCACCAGAGCTCAACA-----TTAGGAGCA
i panTro5.chr15             I 2913 C 0
s gorGor5.CYUI01015946v1       154695  55 +    378907 aaaaaag------------------------------------------------------------aaaaaa-------agagaaaaTATATGTGAGCACCAGAGCTCAACA-----TTAGGAGCA
i gorGor5.CYUI01015946v1    I 6 C 0
s macFas5.chr7              106467433  59 - 171882078 aaaaaag------------------------------------------------------------aagaag-------a-agagaaTATATGTACGCACCAGAGCTCAACATTAGCTTAGGAGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6183859  59 +   6271500 aaaaaaa------------------------------------------------------------aagaag-------a-aGAGAATATATGTACGCACCAGAGCTCAACATTAGCTTAGGAGCA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5101601  59 +   5160157 AAAAAAG------------------------------------------------------------AAGAAG-------A-AGAGAATAGATGTACGCACCAGAGCTCAACATTAGCTTAGGAGCA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20310914  53 -  24206276 agaaaag-------------------------------------------------------------------------a-agagaaTATATGTACGCACCAGAGCTCAACATTAGCTTAGGAGCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       525976 121 -   1458659 aaaaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGAAAGAAAAAAGACAAAACA-AGAAAGTATATGTGAGCGCCAGAGCTCAACA-----TTAAGAGCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       271233  50 +   4111199 ---------------------------------------------------------------------aaaa-------a-agagaaTATATGTATGCACCAGAGCTCAACATCAGGTCAGGAGCA
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      2933961  45 -  42888418 ---------------------------------------------------------------------gaaa-------c-aaaaaaaaaGTGTGAGCACCAGAGCTCAACA-----TTAGGAGCA
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=107260.000000
s hg38.chr15_KI270850v1_alt    142935 21 +    430880 TTTCTGAGATTTGGAGCTATT
s panTro5.chr15              66052542 21 +  83230942 TTTCTGAGATTTGGAGCTATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83288551 21 +  99763055 TTTCTGAGATTTGGAGCTATT
i panPan2.chr15             N 0 C 0
s gorGor5.CYUI01015946v1       154750 21 +    378907 TTTCTGAGATTTGGAGCTATT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106467492 21 - 171882078 TTTCTGAGATTTGGAGCTATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6183918 21 +   6271500 TTTCTGAGATTTGGAGCTATT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5101660 21 +   5160157 TTTCTGAGATTTGGAACTATT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20310967 21 -  24206276 TTTCTGAGATTTGGAGCTATT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       526097 21 -   1458659 TTTCTGAGATTTGGAGCTATT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       271283 21 +   4111199 TTTCTGAGATTTGGAGCTATT
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      2934006 21 -  42888418 TTTCTGAGATTTGGAGCTATT
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18316678 79192 + 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=598092.000000
s hg38.chr15_KI270850v1_alt    142956 109 +    430880 CAACCATGGAAGTTCCTGGCACATACATCAGGTATTCACAATACCCTTTCTCAGGTGTT-------------------------TGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGGCAGTC
s panTro5.chr15              66052563 109 +  83230942 CAACAATGGAAGTTACTGGCACACACATCAGGTATTCACAATACCCTTTCTCAGGTGTT-------------------------TGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGGCAGTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83288572 109 +  99763055 CAACAATGGAAGTTACTGGCACACACATCAGGTATTCACAATACCCTTTCTCAGGTGTT-------------------------TGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGGCAGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       154771 109 +    378907 CAACAATGGAAGTTCCTGGCACACACATCAGGTATTCACAATACCCTTTCTCAGGTGTT-------------------------TGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGGCAGTC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106467513 109 - 171882078 CAGCAATGGAAGTTCCTGGTACATACATCAGGTATTCACAATACCCTTTCTCAGGTGTT-------------------------TGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGACAGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6183939 109 +   6271500 CAGCAATGGAAGTTCCTGGTACATACATCAGGTATTCACAATACCCTTTCTCAGGTGTT-------------------------TGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGACAGTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5101681 109 +   5160157 CAGCAATGGAAGTTCCTGGTACATACATCAGGTATTCACAACACCCTTTCTCAGGTGTT-------------------------TGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGACAGTT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20310988 109 -  24206276 CAGCAATGGAAGTTCCTGGTACATACATCAGGTATTCACAGTACCCTTTCTCAGGTGTT-------------------------TGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGACAGTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       526118 134 -   1458659 CAACATTGGAAGTTCCTGGTACACACATGAGGAATTCACAATACCCTTTCTCAGGTGTTTAGTCACTGCTAGTGAGCCGGCCTGTGGTCACTGCTAGTGAGCTGGCCTGGATCAGTGTTTCCCAAATGGCAGTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       271304 109 +   4111199 CAGCGATGGAAGTTCCTGGTACACACATCAGGTATTCACAATACACTTTCTCAGGTGTT-------------------------TGGTCACTGCTAGTGAGCCTGCCTGGATCAGTGTTTCCCAAATGACAGTC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113945447 108 - 132174527 CAACAATGGAAGTTTTTGTTACACACATCAGGTATTCATAATACCCTTTCTCAGGTATT-------------------------TGGTCACTGCT-GTGAGCCTGCCTGCGTCAGTGTTTCCCAAATGGCAGTC
i calJac3.chr10             I 79192 C 0
s aotNan1.NW_018505940v1      2934027 108 -  42888418 CAACAATGGAAGTTTTTGTTACACACATCAGGTATTCACAATACCCTTTCTCAGGTATT-------------------------TGGTCACTGCT-GTGAGCCTGCCTGCATCAGTGTTTCCCAAATGGCAGTC
i aotNan1.NW_018505940v1    C 0 I 346
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=223897.000000
s hg38.chr15_KI270850v1_alt    143065 76 +    430880 ATTTGCATCTTTGCATTTTTTTTGGGGG--GGGGGTTGTGGGGGTATATACCATACCAGAttttttaaaaattcacat
s panTro5.chr15              66052672 68 +  83230942 ATTTGCATCTTTGCTTTTTTTTTTGGGG--GGGGG--------GTATATCCTGTACCAGATTTTTAAAGAATCGACAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83288681 65 +  99763055 ATTTGCATCTTTGC--TTTTTTTTGGGG--GGGGG--------GTATATCCTGTACCAGATTTTTGAA-AACTGACAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       154880 73 +    378907 ATTTGCATCTTTGC--TTTTTTTTGGGG--GGGGGGGGGGAGGGTATATCCTGTACCAGATTTTTGAA-AACTGACAT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106467622 72 - 171882078 ATTTGCATCTTTGCATTATTTTTGGGGG--TGGGG---TGGGGGCATATCCCATACTATATTTTAAAA-AATTGACAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6184048 72 +   6271500 ATTTGCATCTTTGCATTATTTTTGGGGG--TGGGG---TGGGGGCATATCCCATACTATATTTTAAAA-AATTGACAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5101790 72 +   5160157 ATTTGCATCTTTGCATTATTTTGGGGGG--TGGGG---TGGGGGCATATCCCATACTATATTTTAAAA-AATTGACAT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20311097 72 -  24206276 ATTTGCATCTTTGCATTATTTTTGGGGG--TGGGG---TGGGGGCATATCCCATACTATATTTTAAAA-AATTGACAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       526252 74 -   1458659 ATTTGCATCTTTGCTTTTTTTGGGAGGGGCGGGGG---TGAGGGTATATCCTGTACCAGATTTTTAAA-AATTGACAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       271413 72 +   4111199 ATTTGCATCTTTGCATTTTTTTGGGGGG--TGGGG---TGGGGGCATATCCCATACTAGATTTTTCAA-AATTGACAT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113945555 60 - 132174527 --------CTTGGCATTCTTTTTTTGGG--TGGGG-------GGTGTATCCCGTGCCAGATTTTTAAG-AGCTGACAT
i calJac3.chr10             C 0 I 542
e aotNan1.NW_018505940v1      2934135 346 -  42888418 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=1190094.000000
s hg38.chr15_KI270850v1_alt    143141 308 +    430880 taaaaatacatgtataaaatgtgtaaagt-----------------------------------gcactaa----tctaaagtgcactggatgta-ttttttattgatgtacatacttttgttatccatcacccaggtcaaaatacagaatcagcaccacagagggttccctcctcctccttcccagccaataatcttctcctcctacctaaccaactgttcttacttcaatcactgtcaactagtattttacattcttgaactgcatataaaGTGTCTC-AAGTttc-acttaacacttttcttgaaatacac-ttgttttttgccactttttatttgacctaagaagta
s panTro5.chr15              66052740 303 +  83230942 TAAAAATACATGTTTAAAAAGTgcaaagt-----------------------------------gcactaa---------agtgcactggatgta-ttttttattcatgtatatacttttgttatctatcacccaggtcaaaatacagaaccagcaccccagagggttccctcctcctccttcccagccaataatcttctcctcctacctaacca-ctgttcttacttcaatcactatcaactagttttacacgttcttcaactgcatataaatTGTCTC-Aattttttacttaacacttttcttgaagtgctt-tcgttttttgcccctttttatttgacctaagaaata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83288746 303 +  99763055 TAAAAATACATGTTTAAAATGTgcaaagt-----------------------------------gcactaa---------agtgcactggatgta-ttttttattcatgtatatacttttgttatctatcacccaggtcaaaatacagaaccagcaccccagagggttccctcctcctccttcccagccaataatcttctcctcctacctaacca-ctgttcttacttcaatcactatcaactagttttacacgttcttcaactgcatataaatTGTCTC-AATTTTTTACTTAACACTTTTCTTGAAGTGCTT-TCGTTTTTTGCCCCTTTTTATTTGAcctaagaaata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       154953 303 +    378907 TAAAAATACATGTTTAAAATGTgcaaagt-----------------------------------gcactaa---------agtgcactggatgta-ttttttattcatgtatatacttttgttatctatcacccaggtcaaaatacagaaccagcaccccagagggttccctcctcctccttcccagccaataatcttctcctcctacctaacca-ctgttcttacttcaatcactgtcaactagttttacacgttcttcaactgcatataaatTGTCTC-Aattttttacttaacacttttcttgaagtgctt-tcgttttttgccactttttatttgacctaagaaata
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106467694 305 - 171882078 TAAAAATACATGTTTAAAATGTgtaaagt-----------------------------------gcactaa----tcttaagtgcactggatgta-tttttttttcatgtatacacttttgttatccatcacccaggtcaaaatacagaaccagca-accaga-ggttccctcctcttccttcccagtcaataatcgtcccctcctacctaacca-ctgtcctTacttcagtcactgtcaactagttttgcacgttcttgaactgcatataaagtgtctc-aattttt-acttaacatttttcttgaagtacac-ttgttttttgccactttttatttgacctaagaaata
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6184120 306 +   6271500 TAAAAATACATGTTTAAAATGTgtaaagt-----------------------------------gcactaa----tcttaagtgcactggatgtattttttttttcatgtatacacttttgttatccatcacccaggtcaaaatacagaaccagca-accaga-ggttccctcctcttccttcccagtcaataatcgtcccctcctacctaacca-ctgtcctTacttcagtcactgtcaactagttttgcacgttcttgaactgcatataaagtgtctc-aattttt-acttaacatttttcttgaagtacac-ttgttttttgccactttttatttgacctaagaaata
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5101862 305 +   5160157 TAAAAATACATGTTTAAAATGTgtaaagt-----------------------------------gcactaa----tcttaagtgcactggatgta-tttttttttcatgtatacacttttgttatccatcacccaggtcaaaatacagaactagca-cccaga-ggttccctcctcttccttcccagtcaataatcgtcccctcctacctaacca-ctgttctTacttcagtcactgtgaactagttttgcacgttcttgaactgcatataaagtgtctc-aattttt-acttaacatttttcttgaagtacac-ttgttttttgccactttttatttgacctaagaaata
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20311169 306 -  24206276 TAAAAATACATGTTTAAAATGTgtaaagt-----------------------------------gcactaa----tcttaagtgcactggatgta-ttttttattcatgtatacacttttgttatccatcacccaggtcaaaatacagaaccagca-cccagagggttccctcctcttccttcccagtcaataatcgtcccctcctacctaacca-ctgttctTacttcagtcactgtcaactagttttgcacgttcttgaactgcatataaagtgtctc-atttttt-acttaacatttttcttgaagtacac-ttgttttttgccactttttatttgacctaagaaata
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       526326 307 -   1458659 TAAAAATACATATTTAAAATGTgtaaagt-----------------------------------gcactaa----tcgtaagtgcactggatgtatttttttattcatgtatatacttttgttatccattacccaggtcaaaatacagaaccatcaccccagagggttccctcctccttcttcccagccaataaccttctcttcctgcctaacca-ctgttcttacttcaatcactgtcaactagttttacacgttcttgaactgc--ataAAGTGTCTCAatttttt-acttaacacttttcttgaagtgcat-tcgtttttcgccactttttatttgacctaagaaata
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       271485 306 +   4111199 TAAAAATACATGTTTAGAATGTgtacaat-----------------------------------gcactaa----tcttaagtgcactggatgta-ttttttattcatgtatattcttttgttatccatcacccaggtcaaaatacagaaccagca-cccagagggttccctcctcttccttcccagtcaataatcgtcccctcctacctaaaca-ctgttcttacttcagtcactgtcaactagttttgcaagttcttgaactgcatataaaGTGTCTC-AATCTTT-ACTTAACATTTTTCTTGAAGTGCAC-TTGTTTTTTGCCACTTTTTATTTGACCTAAGAAATA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113946157 261 - 132174527 TAAAAATACATGTTTAAAACGTGTAAAGTTACTGGCTGTGGAAAAGAAAAATAAAAAAAGAAAAacaataaaacgtgtaaagtgcactagatgta-tttttcattcatgtatatgcttttgttatccacctcccaggtcaaaatacagaaccagcaccccagagggttctctcctcctcctccTTGA---------------------------A-GTG----TACTTCAA---------------------------------------GAAG-------AGTTttt-acttaacactttttttgaagtacacttttttttttgccactttttatttgac----------
i calJac3.chr10             I 542 C 0
e aotNan1.NW_018505940v1      2934135 346 -  42888418 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=609508.000000
s hg38.chr15_KI270850v1_alt    143449 112 +    430880 acattaatgaaacaatgatttgacgtgataggcatttccctcctaatgagcacta-aaa-cacttaactatttgaaaaaagaagtttctccgtgtaccagctaatatattctcc
s panTro5.chr15              66053043 113 +  83230942 acattaatgaaacaatggtttgacgtgataggcatttccctcctaatgcgcacta-aaaacacttaactatttgaaaaaagaagtttcttcgtgtaccaactaatatattctcC
i panTro5.chr15             C 0 I 48
s panPan2.chr15              83289049 113 +  99763055 acattaatgaaacaatggtttgacgtgataggcatttccctcctaatgcgcacta-aaaacacttaactatttgaaaaaagaagtttcttcgtgtaccaactaatatattctcC
i panPan2.chr15             C 0 I 48
s gorGor5.CYUI01015946v1       155256 113 +    378907 acattaatgaaacagtggtttgacgtgataggcatttccctcctaatgcgcacta-aaaacacttaactatttgaaaaaagaagtttcttcgtgtaccaactaatatattctcC
i gorGor5.CYUI01015946v1    C 0 I 30
s macFas5.chr7              106467999 112 - 171882078 ccattaatgaaacaatggtttgacgtgataggcatttccctcctaatgcgcacta-aaa-cacttaactatttgaaaaaagaagtatctttgtgtatcaactaatatattctcc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6184426 112 +   6271500 ccattaatgaaacaatggtttgacgtgataggcatttccctcctaatgcgcacta-aaa-caCTTAACTATTTGAAAAAAGAAGTATCTTTGTGTATCAACTAATATATTCTCC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5102167 112 +   5160157 ccattaatgaaacaatggtttgacgtgataggcatttccctcctaatgcgcacta-aaa-caCTTAACTATTTGAAAAAAGAAGTATCTTTGTGTATCAACTAATATATTCTCC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20311475 111 -  24206276 ccattaatgaaacaatggtttgacgtgataggcatttccctcc-aatgcgcacta-aaa-cacttaactatttgaaaaaagaagtatctttgtgtatcaactaatatattctcc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       526633 109 -   1458659 acattaatgaaacaatggtttgacttgataggcatttccctcctaatgcgcactagaaa-cacttaactatttgaaaaaagaagtttcttcgtgt----actaATATATTCTCC
i manLeu1.NW_012105520v1    C 0 I 30
s colAng1.NW_012116021v1       271791 112 +   4111199 ACATTAATGAAACAATGGTTTGACGTGATAGGCATTTCCCTCCTAATGTGCACTA-AAA-CACTTAACTATTTGAAAAAAGAAGTATCTTTGTGTGTCAACTAATATATTCTCC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113946418 110 - 132174527 --attaatgaaacaatggtttgacgtgataggcattcccctcctaatgagcacta-caa-cacttaactatttgaaaaaagaagtttcttcgtgtaccagctaatatattctcc
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2934481 112 -  42888418 acattaatgaaacaatggtttgacgtgataggcattcccctcctaatgagcacta-cga-cacttacctatttgaaaaaagaagtttcttcgtgtaccaacgaatatattctcc
i aotNan1.NW_018505940v1    I 346 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=16191.000000
s hg38.chr15_KI270850v1_alt    143561 5 +    430880 tcggc
s gorGor5.CYUI01015946v1       155399 5 +    378907 TGGGC
i gorGor5.CYUI01015946v1    I 30 I 13
s macFas5.chr7              106468111 5 - 171882078 tcggc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6184538 5 +   6271500 TCGGC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5102279 5 +   5160157 TCGGC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20311586 5 -  24206276 tgggc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       526772 5 -   1458659 TGGGT
i manLeu1.NW_012105520v1    I 30 I 13
s colAng1.NW_012116021v1       271903 5 +   4111199 TCGGC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113946528 5 - 132174527 tcggc
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2934593 5 -  42888418 tcggc
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e panPan2.chr15              83289162 48 +  99763055 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I
e panTro5.chr15              66053156 48 +  83230942 I

a score=965301.000000
s hg38.chr15_KI270850v1_alt    143566 181 +    430880 cgccgttggtacacggaccacattttgTTTCTCAAAGCAATCCGATGATTTCTGAGGTCCTTTGCAGCTTGAACACGGAACGAC--TGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCCATAGCGCCGTGCATCCATCCAACACTTGTTTAATACCTA
s panTro5.chr15              66053204 181 +  83230942 CACCATTGGTACACGGACCACATTTTGTTTCCCAAAGCAaccagatgatttttgaggtcctttgcagctcgaacaCGGAATGAC--TGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCCATAGCGCCGTGCATCCATCCAACACTTGTTTAATACCTA
i panTro5.chr15             I 48 C 0
s panPan2.chr15              83289210 181 +  99763055 CACCATTGGTACACGGACCACATTTTGTTTCCCAAAGCAaccagatgatttttgaggtcctttgcagctcgaacaCGGAATGAC--TGTGGTGATCGAGTAGCCAGAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCCATAGCGCCGTGCATCCATCCAACACTTGTTTAATACCTA
i panPan2.chr15             I 48 C 0
s gorGor5.CYUI01015946v1       155417 183 +    378907 CACCATTGGTACACGGACCACATTTTGTTTCCCAAAGCAaccagatgatttttgaggtcctttgcagctcgaacacggaatgactttgtggtGATCGAGGAGACAGAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCCATAGCGCCGTGCATCCATCCAACAGTTGTTTAATACCTA
i gorGor5.CYUI01015946v1    I 13 C 0
s macFas5.chr7              106468116 172 - 171882078 caccgttggtacacggaccacattttgTTTCTCAAAGCAACCAGATGATTTCTGAGGTCGTTTGCAGCTCGAACACGGAATGACTTTGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCTATACCGCCGTGCATCCATCCAACACTTG-----------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6184543 172 +   6271500 CACCGTTGGTACACGGACCACATTTTGTTTCTCAAAGCAACCAGATGATTTCTGAGGTCGTTTGCAGCTCGAACACGGAATGACTTTGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCCCTATACCGCCGTGCATCCATCCAACACTTG-----------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5102284 172 +   5160157 CACCGTTGGTACACGGACCACATTTTGTTTCTCAAAGCAACCAGATGATTTCTGAGGTCGTTTGCAGCTCGAACACGGAATGACTTTGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCTATAGCGCCGTGCATCCATCCAACACTTG-----------
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20311591 172 -  24206276 caccgttggtacacggaccacattttgTTTCTCAAAGCAaccagatgatttctgaggtcatttgcagctcgaacacggaatgactttgtggtGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCTATAGCGCCGTGCATCCATCCAACACTTG-----------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       526790 183 -   1458659 CACCGTTGGTACCCGGACCACACTTTGTTTCTCAAAGCAACCAGATGTTTTCTGAGGTCATTTGCAGCTCGAACACGGAATGACTTTGCGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGAGTCCGCCATAGCGCCTTGCATCCATCCAACACTTGTTTAATACCTA
i manLeu1.NW_012105520v1    I 13 C 0
s colAng1.NW_012116021v1       271908 183 +   4111199 CACCGTTGGTACACGGACCACATTTTGTTTCTCGAAGCAACCAGACGATTTCTGAGGTCATTTGCAGCTCGAACACGGAATGACTTTGTGGTGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATTGTGATTCCGCTATAGCGCCGTGCATCCATCCAACACTTGTTTAATACCTA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113946533 175 - 132174527 cacagttggtacatagattacattttgTTTCTCAAAGCAaccagatgatttctgaggtcctttgcagctcgaacacggaatgactttgtggtGATCTAGTAGC--------CACGGAATGCACTGTCACAATCGTGATTCCGCCATAGCACCGTGCATCCATGCAACACTTGTTTAATACCTA
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2934598 183 -  42888418 cacagttggtacacggaccacattttgTTTCTCAAAGCAaccagatgatttctgaggtcccttgcagctcgaacacggaatgactttgtggtGATCGAGTAGCCAAAAGTTCACGGAATGCACTGTCACAATCGTGATTCCGCCATAGCACTGTGCATCCATGCAACACTTGTTTAATTCCTA
i aotNan1.NW_018505940v1    C 0 I 5
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=69436.000000
s hg38.chr15_KI270850v1_alt    143747 21 +    430880 TATTTAATACCTAATACCTTA
s panTro5.chr15              66053385 21 +  83230942 TATTTAATACCTAATACCTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83289391 21 +  99763055 TATTTAATACCTAATACCTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       155600 21 +    378907 TATTTAATACCTAATACCTTA
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106468288 19 - 171882078 --TTTAATACCTAATACCTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6184715 19 +   6271500 --TTTAATACCTAATACCTTA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5102456 19 +   5160157 --TTTAATACTTAATACCTTA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20311763 19 -  24206276 --TTTAATACCTAATACCTTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       526973 21 -   1458659 TATTTAATACCTAATACCTTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       272091 21 +   4111199 TATTTAATACCTAATACCTTA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113946708  5 - 132174527 ---GCAGT-------------
i calJac3.chr10             C 0 C 0
e aotNan1.NW_018505940v1      2934781  5 -  42888418 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=2201518.000000
s hg38.chr15_KI270850v1_alt    143768 409 +    430880 GACTGTCCTAGGCTGTGGACACAGAAGACTAAACCCCACTTCCTGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAATGCTACAGCTCAGGTAACCACGAGCACACAGAGAAAGGGCAGTTTCTAGAAACAGGGCGGAGAGGAGACCGTGAGTGGGCATTTCCCAGAGCAGTCTCTGCCAGCCACCCTGCTGTGATCACTTTGCCACAGAGCAGCCCCGGCGGTCAACCTCAGCCTCCCTTAGCAACCTGAGCGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGAGCGGGATGGGCAGCTCTGCCGTGCAATCCCAGCTCGCAGCCCTT-GCCCCGCGTGTACTCACGGGAGGACTCGCAGACGTTACTGCCCTCTTGCGTGCCCCG
s panTro5.chr15              66053406 409 +  83230942 GACTGTCCTAGGCTGTGGACGAAGAAGACTAAACCCCACTTCCTGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTGCAGCTCAGGTAACCACCGGCACACGGAGAGAGGGCAGTTTCTGGAGAGAGGGCGGAGAGGAGACCGTGGGTGGGCATTTCCCAGAGCAGCCTCTGCCAGCCACCCTACTTTGATCACTTTGCCGCCGAGCAGCAGCGGCGGTCAACCTCAGCCTCCCTTAGCAACCTGAGTGCCCCGTCCAGGAGCCTTACTATTGGTCTCATGCAGCGAGATGGGCAGCTCTGCCGTGCAATCCCAGCTCGCAGTTCTT-GCTCCGCGTGTACTCACGGGAGGACTCGCAGGCGTTACCGCCTTCCCGCGTGCCCCG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83289412 409 +  99763055 GACGGTCCTAGGCTGTGGACACAGAAGACTAAACCCCACTTCCAGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTGCAGCTCAGGTAACCACCGGCACAGAGAGGAAGGGCGGTTTCTGGAGAGAGGGCGGAGAGGAGACCGTGGGTGGGCATTTCCCAGAGCAGCCTCTGCCAGCCACCCTACTTTGATCACTTTGCCGCCGAGCAGCAGCGGCGGTCAACCTCAGCCTCCCTTAGCAACCTGAGTGCCCCGTCCAGGAGCCTTACTATTGGTCTCATGCAGCGAGATGGGCAGCTCTGCCGTGCAATCCCAGCTCGCAGTTCTT-GCTCCGCGTGTACTCACGGGAGGACTCGCAGGCGTTACCGCCTTCCCGCGTGCCCCG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       155621 409 +    378907 GACGGTCCTAGGCTGTGGACACAGAAGACTAAACCCCACTTCCTGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTGCAGCTCAGGTAACCACCGGCACACAGAGGAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACCGTGGGTGGGCATTTCCCAGAGCAGCCTCTGCCAGCCACCCTACTTTGATCACTTTGCCGCCGAGCAGCAGCGGCGGTCAACCTCAGCCTCCCTTAGCAACCTGAGCGCCCCGTCCAGGAGCCTTACTATTGGTCTCGTGGAGCGGGATGGGCAGCTCTGCCGTGCAATCCCAGCTCGCAGTTCTT-GCTCCGCGTGTACTCACGGGAGGACTCGCAGGCGTTACCGCCTTCCCGCGTGCCCCG
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106468307 395 - 171882078 GACTGTCCTAGGCTGTGCACACAGAAGACTAAACCTCACTTCCTGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTGCAGCTCAGGTAACCACTGGCACACAGAGAAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACGGTA--------------AGAGAAGTCTCTGCCAGCCACTCTAATTTGATCACTTTGCCACAAAGCAGCAGTGGCAGTCAACCTCAGCCTCCCTTAGCAACCTGAGTGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGGGCGGGATGGGCAGCTCTGCCGTGCAATCCTAGCTCGCAGCCCTT-GCTCCGCGTGTACTCACGGGAGGACTCGCAGGCGTTACCGCCCTCCTGCGTGCCCCG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6184734 395 +   6271500 GACTGTCCTAGGCTGTGCACACAGAAGACTAAACCTCACTTCCTGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTGCAGCTCAGGTAACCACTGGCACACAGAGAAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACGGTA--------------AGAGAAGTCTCTGCCAGCCACTCTAATTTGATCACTTTGCCACAAAGCAGCAGTGGCGGTCAACCTCAGCCTCCCTTAGCAACCTGAGTGCCCCGCCCAGGGGCCTTACTATTGGTCTCGTGGAGCGGGATGGGCAGCTCTGCCGTGCAATCCTAGCTCGCAGCCCTT-GCTCCGCGTGTACTCACGGGAGGACTCGCAGGCGTTACCGCCCTCCTGCGTGCCCCG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5102475 381 +   5160157 GACTGTCCTAGGCT--------------CTAAACCTCACTGCCTGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTGCAGCTCAGGTAACCACTGGCACACAGAGAAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACGGTA--------------AGAGAAGTCTCTGCCAGCCACTCTAATTTGATCACTTTGCCACAAAGCAGCAGCTGCAGTCAACCTCAGCCTCCCTTAGCAACCTGAGTGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGGGCGGGATGGGCAGCTCTGCCGTGCAATCCTAGCTCGCAGCCCTC-GCTCCGCGTGTACTCACGGGAGGACTCGCAGGCGTTACCGCCCTCCTGCGTGCCCCG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20311782 409 -  24206276 GACTGTCCTAGGCTGTGCACACAGAAGACTAAACCTCACTTCCCGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTGCAGCTCAGGTAACCACCGGCACACAGAGAAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACCGTGGGTGGGCATTTCCCAGAGCAGTCTCTGCCAGCCACTCTAATTTGATCACTTTGCCACAAAGCAGCAGCTGCGGTCAACCTCAGCCTCCCTTAGCAACTTGAGTGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGAGCGGGATGGGCAGCTCTGCCTTGCAATCCTAGCTAGCAGCCCTC-GCTCCGCGTGTACTCACGGGAGGACTCGCAGGCGTTACCGCCCGCCTGCGTGCCCCG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       526994 409 -   1458659 GACTGTCCTAGGCTGTGCACACAGAAGACTAAACCCCACTTCCTGAGTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGCTAAGTGCTGCAGCTCAGGTAACCACTGGCACACAGAGGAAGGGCGGTTTCTGGAGACAGGGTGGAGAGGAGACCGTGGGTGGGCATTTCCCAGAGCAGCCTCTGCCAGCCACCCTACTCTGATCACTTTGCCGCCGAGCAGCAGCGGCGGTCAACCTCAGCCTCCCTTAGCAACCTGACTGCCCCGCCCAGGAGCTTTACTATTGGTCTCGTGGAGTGGGATGGGCAGCTCTGCCGTGCAATCCCAGCTCGCAGTTCTT-GCTCCGCGTGTACTCACGGGAGGACTCGCAGGCATTACCGCCCGCCCGCGTGCCCCG
i manLeu1.NW_012105520v1    C 0 n 0
s colAng1.NW_012116021v1       272112 409 +   4111199 GACTGTCCTAGGTTGCGCACACAGAAGACTAAACCTCACTTCCTGAGTTGAAGTTGGGGAAATAGAGGAGTAAATCATTTCACGATGTGTGGTTAAGTGCTGCAGCTCAGGTAACTACCGGTACACAGAGAAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACCATGGGTGGGCATTTCCCAGAGCAGCCTCTGCCAGCCACTCTAATTTGATCACTTTGCCACAAAGCAGCAGCTGCGGTCAACCTCAGCCTCCCTTAGCGACCTGAGTGCCCCGCCCAGGTGCCTTACTATTGGTCTCGTGGAGCGGGATGGGCAGCTCTGCCGTGCAATCCTAGCTCGCAGCCCTT-GCTCCGCGCGTACTCACGGGAGGACTCGCAGGCGTTACCGCCCTCCTGCGTGCCCCG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113946713 409 - 132174527 GACTCTGCTAGGCTGTGGACACAGAACACTAAACCCCACTTCCTGATTTGAAGTGGGGGAAATAGAGGAGTAAATCATTTCAGGATGTGTGGTTAAGTGCTACAGTTCAGGTAACCACTGGCACACAGAGGAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACCGTGGGTGGGCATTTCCCAGAGCAGCCTCAGCCGGCCACCCCACTTTGATCACTTTGCCGCC-AGCAGCAGCGGCGGTCAACCTCAGCCTCCCTTAGCAACCTGCGTGCCCCGCCCAGGAGCCTTACTATTGGTGTCGTGGAGCGGAATGGGCAGCTCTGCCGTGCAATCCCAGCTCGTAGCCCTTGGCTCCGCGTGTATTCACTGGAGGATTCTCGGGCTTTATAACCCTCCCGCGTGCCCCG
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2934786 409 -  42888418 GACTCTGCTAGGCTGTGGACACAGAAGACTAAACCCCACTTCCTGATTTGAAGTAGGGGAAATAGAGGAGTAAGTCATTTCAGGATGTGTGGTTAAGTGCTACAGTTCAGGTAACCACCGGCACACAGAGGAAGGGCGGTTTCTGGAGACAGGGCGGAGAGGAGACCGTGGGTGGGCATTTCCCAGAGCAGCCTCAGCCAGGCACCCCACTTTGATCACTTTGCCGCC-AGCAAGAGCGGCGGTCAACCTCAGCCTCCCTTAGCAACCTGCGTACCCCGCCCAGGAGCCTTACTATTGGTCTTTTGGAGTCGGATGGGCAGCTCTGCCGTGCAATCCCAGCTCGCAGCCCTTGGCTCCGCGTGTATTCACTGGAGGACTCTCAGGCTTTACCGCCCTCCCGCGTGCCCCG
i aotNan1.NW_018505940v1    I 5 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=16777.000000
s hg38.chr15_KI270850v1_alt    144177 4 +    430880 GCCA
s panTro5.chr15              66053815 4 +  83230942 CCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83289821 4 +  99763055 CCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       156030 4 +    378907 CCCA
i gorGor5.CYUI01015946v1    C 0 I 31
s macFas5.chr7              106468702 4 - 171882078 CCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6185129 4 +   6271500 CCCA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5102856 4 +   5160157 CCCA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20312191 4 -  24206276 CCCA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       272521 4 +   4111199 CCCA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113947122 4 - 132174527 CCCA
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2935195 4 -  42888418 TCTA
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e manLeu1.NW_012105520v1       527403 0 -   1458659 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=9000.000000
s hg38.chr15_KI270850v1_alt    144181 2 +    430880 CC
s panTro5.chr15              66053819 2 +  83230942 CC
i panTro5.chr15             C 0 I 28
s panPan2.chr15              83289825 2 +  99763055 CC
i panPan2.chr15             C 0 I 28
s macFas5.chr7              106468706 2 - 171882078 CC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6185133 2 +   6271500 CC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5102860 2 +   5160157 CC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20312195 2 -  24206276 CC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       272525 2 +   4111199 CC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113947126 2 - 132174527 CC
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2935199 2 -  42888418 CC
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e manLeu1.NW_012105520v1       527403 0 -   1458659 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I
e gorGor5.CYUI01015946v1       156034 31 +    378907 I

a score=3450.000000
s hg38.chr15_KI270850v1_alt    144183 2 +    430880 CC
s macFas5.chr7              106468708 2 - 171882078 CT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6185135 2 +   6271500 CT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5102862 2 +   5160157 CT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20312197 2 -  24206276 CT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       272527 2 +   4111199 CC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113947128 2 - 132174527 CC
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2935201 2 -  42888418 CC
i aotNan1.NW_018505940v1    C 0 I 51
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e panPan2.chr15              83289827 28 +  99763055 I
e manLeu1.NW_012105520v1       527403 0 -   1458659 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I
e gorGor5.CYUI01015946v1       156034 31 +    378907 I
e panTro5.chr15              66053821 28 +  83230942 I

a score=28661.000000
s hg38.chr15_KI270850v1_alt    144185 28 +    430880 CGGGCGGCTTGTAGCCGGTGCGCGGGGT--
s macFas5.chr7              106468710 25 - 171882078 CGGGC-GCTTGTAGCTGGTGCGCAGG----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6185137 25 +   6271500 CGGGC-GCTTGTAGCTGGTGCGCAGG----
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5102864 25 +   5160157 CGGGC-GCTTGTAGCTGGTGCGCAGG----
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20312199 26 -  24206276 CGGGCAGCTTGTAGCTGGTGCGCAGG----
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       272529 26 +   4111199 CGGGCAGCTTGTAGCCGGTGCGTAGA----
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113947130 27 - 132174527 -GGGCAGGCTGCTGCGCATGCGCGGG--CA
i calJac3.chr10             C 0 C 0
e aotNan1.NW_018505940v1      2935203 51 -  42888418 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e panPan2.chr15              83289827 28 +  99763055 I
e manLeu1.NW_012105520v1       527403  0 -   1458659 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I
e gorGor5.CYUI01015946v1       156034 31 +    378907 I
e panTro5.chr15              66053821 28 +  83230942 I

a score=64320.000000
s hg38.chr15_KI270850v1_alt    144213 25 +    430880 GGCTGGGGCTACGTGCAGAGCTGTC
s panTro5.chr15              66053849 25 +  83230942 GGCTAGAGCTGTGTGCAGGGCCAGC
i panTro5.chr15             I 28 C 0
s panPan2.chr15              83289855 25 +  99763055 GGCTAGAGCTGTGTGCAGGGCCAGC
i panPan2.chr15             I 28 C 0
s gorGor5.CYUI01015946v1       156065 25 +    378907 GGCTGGAGCTGCGTGCAGGGCCAGC
i gorGor5.CYUI01015946v1    I 31 C 0
s macFas5.chr7              106468735 22 - 171882078 ---CGGGGCTGTGTGCAGGGTCAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6185162 22 +   6271500 ---CGGGGCTGTGTGCAGGGCCAGC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5102889 22 +   5160157 ---CGGGGCTGTGTGCAGGGCCAGC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20312225 22 -  24206276 ---CGGGGCTGTGTGCAGGGGCAGC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       272555 22 +   4111199 ---CCGGGCTGTGTGCAGGGCCAGC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113947157 24 - 132174527 GGCTGGGTCTGTGTTCTGGGG-AGC
i calJac3.chr10             C 0 C 0
e aotNan1.NW_018505940v1      2935203 51 -  42888418 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e manLeu1.NW_012105520v1       527403  0 -   1458659 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=556868.000000
s hg38.chr15_KI270850v1_alt    144238 159 +    430880 GCGGAGCCGGAACAGCAGCGGTGAAGCCCCTCGGCTCGGCCGAGACCGCCGTGCCCATTGCTCGCCTCGGTTgccgccgctttagccgcagccgctgctgccgccgccg---------GGGGAGAGGCAGCCTATTGTCTTTCTCCGCGGCGAAGGTGAGGAGCTGTC
s panTro5.chr15              66053874 144 +  83230942 GCGGAGCCCGAGCAGCCGCGGTGAAGCGCCTGTGCTCCGCCGAGACTGCCGTGCCCATTGCTCGCCTCGGTCGCCGCCGCTTTA---------------GCCGCCGCCG---------GGGGAGCGGCCGCCTATTGTCTTTCTCCGCGGCGAAGGTGAGGAGTTGTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83289880 144 +  99763055 GCGGAGCCCGAGCAGCCGCGGCGAAGCGCCTGTGCTCCGCCGAGACTGCCGTGCCCATTGCTCGCCTCGGTCGCCGCCGCTTTA---------------GCCGCCGCCG---------GGGGAGCGGCCGCCTATTGTCTTTCTCCGCGGCGAAGGTGAGGAGTTGTC
i panPan2.chr15             C 0 M 949
s gorGor5.CYUI01015946v1       156090 144 +    378907 GCGGAGCCCGAGCAGCCGCGGTGAAGCGCCTGTGCTCCGCCGAGACTGCCGTGCGCATTGCTCGCCTCGGTCGCCGCCGCTTTA---------------GCCGCCGCCG---------GGGGAGCGGCCGCCTATTGTCTTTCTCCGCGGCGAAGGTGAGGAGTTGTC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106468757 152 - 171882078 GCGTAGCCCGAGCAGTAGCGGTGAAGCGCCTGGGCTGGGCGGAGACTGCCATGCCGGTTGCTCGCCTCAGTCGCCGCCTCTTTA---------------GCCACCGCCGCCTCTGCCGGGGGAGCGGCCGCCTATTGTTTTTCTGTGCGGCGAAGGTGAGGAGCTGT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6185184 152 +   6271500 GCGTAGCCCGAGCAATAGCGGTGAAGCGCCTGGGCTGGGCGGAGACTGCCATGCCGGTTGCTCGCCTCGGTCGCCGCCTCTTTA---------------GCCACCGCCGCCTCTGCCGGGGGAGCGGCCGCCTATTGTTTTTCTGCGCGGCGAAGGTGAGGAGCTGT-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5102911 152 +   5160157 GCTTAGCCCGAGCAGTAGCGGTGAAGCGCCTGGGCTGGGCGGAGACTGCTATGCCGGTTGCTCGCCTCGGTCGCCGCCTCTTTA---------------GCCACCGCCGCCTTTGCCGGGGGAGCGGCCGCCTATTGTTTTTCTGTGCGGCGAAGGTGAGGAGCTGT-
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20312247 151 -  24206276 GCGTAGCCCGAGCAGCAGCGGTGAAGCGCCTGGGCTGGGCGGAGACTGCCATGCCGGTTGCTCGCCTCGGTCGCCGCCTCTGTA---------------GCCACCGCCGCCTCTGCT-GGGGAGCGGCCGCCTATTGTTTTTCTGTGCGGCGAAGGTGAGGAGCTGT-
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       272577 149 +   4111199 GGGGAGCCGGAGCAGCAGCTGTTAAGCGCTTGGGCTCCGTCGCGACTGCCGTGCCCGTTGCTCGCCTCAGTCGCAGCCTCTTTA---------------GCCACCGCCGC---TGCCGGGGGAGCGGCAGCCTATTGTTTTTCTGCGCGGCGAAGGTGAGGAGCTGT-
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113947181 147 - 132174527 GCGGAGCCGGAGCAGCCGCGGAGGAGCGCTTGGGCTCCGCCGATACCGTAGTGTCCACTGCTCGCCTCAGTCGCCACTGCTTTA---------------GCCGCCGCCA------CCGGTGGAGCGGCCGCCTATTGTCTTTCTCCGTGGCGAAGGTGAGGAGCTCTC
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2935254 147 -  42888418 GCGGAGCCGAAGCAGTCGCGGAGAAGCGCTTGGGCTCCGCCGAGATCGTAGTGTCCACTGCTCGCCTCGGTCGCCACCGCTTTA---------------GCCGCCGCCA------CCGGTGGAGCAGCCGCCCATTGTCTTTCTCCGTGGCGAAGGTGAGGAGCTGTC
i aotNan1.NW_018505940v1    I 51 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e manLeu1.NW_012105520v1       527403   0 -   1458659 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=389592.000000
s hg38.chr15_KI270850v1_alt    144397 130 +    430880 TCGGCTCGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGGAAGTTTTGTGATTTGAGGA-GGGGTCGGGGTGCGGAGCGCGGCCCGT-CCCCTGCGGCCGCT
s panTro5.chr15              66054018 126 +  83230942 CCAGCTCGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGGAAGTTTTGTGATTTG-----TGGGTTGGGGCGCGGAGCGCGGCCCGA-CCCATGCGGCCTCT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       156234 126 +    378907 CCAGCTCGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGGAAGTTTTGTGATTTG-----TGGGTCGGGGCGCGGAGCGCGGCCAGT-CCCCTGCTGTTGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106468909 126 - 171882078 ----CTCGGCCGGCGGGGGAGCCCCGGGAGCTTCACTGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGCAAGTTTTGTAATTTGAGGA-GGGGTGGGGGTGCGGAGCGCGGCCCGT-CCCCTGCGGCTGCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6185336 126 +   6271500 ----CTCGGCCGGCGGGGGAGCCCCGGGAGCTTCACTGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGCAAGTTTTGTAATTTGAGGA-GGGGTGGGGGTGCGGAGCGCGGCCCGT-CACCTGCGGCTGCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5103063 126 +   5160157 ----CTCGGCCGGCGGGGGACCCCCAGGAGCTTCACTGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGCAAGTTTTGTAATTTGAGGA-GGGGTGGGGGTGCGGAGCGCGGCCCGT-CCCCTGCGGCTGCT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20312398 128 -  24206276 ----CTCGGCCGGCGGGGGAGCCCCGGGAGCTTCACTGTGACAGCGCAACTTAGTTGGCGGAGTTGGGGGAAGTTTTGTGATTTGAGGAGGGGGTGGCGGTGCGGAGCGCGGCCCGTCCCCCTGCGGCTGCT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       272726 125 +   4111199 ----CTCGGCCCGCGGGGGAG-CCCGGGAGCCTCACTGTGAGAGCGCAACTTAGTTGGCGGAATTGGGGGAAGTTTTGTGATTTGAGGA-GGGGTGGGGGTGCGGAGCGCGGCCCGT-CCCCTGCGGCCGCT
i colAng1.NW_012116021v1    C 0 I 482
s calJac3.chr10             113947328 103 - 132174527 CCAGCTCGGCCCGCGGGGGAGCCCCGGGAGCCGCACGGTGAGAGCGCAACTTAGTTGCCGGAGTTGGGGGAAGTTTTG--ATTTGAGGA-GGGGGGCGGG-------------------GTCTGC-------
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2935401 121 -  42888418 CCGGCTCGGCCCGCGGGGAAGCCCCGGGAGCCGCACGGTGAGAGCGCAACTTAGTTGGCGGAGTTGGGGGAAGTTTTG--CTTTGAGGA-GGGGTCCGGGTGCGGAGCGCCGCCCCT-CTCCTGC-------
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e panPan2.chr15              83290024 949 +  99763055 M
e manLeu1.NW_012105520v1       527403   0 -   1458659 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=932024.000000
s hg38.chr15_KI270850v1_alt    144527 360 +    430880 -------CGGTGGGGCGGGCCCCAGAGGAGGGTCGGGGGCTGCGCGGGGCTTCAGGGGCGGGCGGCACGGATGGGTAGCCGGGCGGCGCGGGGACCTCAGCTTTGCGGACCCCTCCTCCCTGCGCATCACCCTTCTCCCGCATTGTCTGCTTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTTGGGGGCCGTCGCCGCTTTCCGGATGGGGGGCGCGCCCGGCGGCGGAT----------------------------GG-CCCCGAACCCTTGCCCCGGGTCCCCGGGTTGGCGCCGCTGGGGCGGACTCACTCCTCCCCTGGGGCGGGCGGCCGCGGTGTGGAGTCCGCGCCGCGAACAAGTGCTGCGGGCGCGAGGGAGCGGTTCCCC
s panTro5.chr15              66054144 387 +  83230942 -------CGGTGGGGCGGGCCCCGGAGGAGGGGCGGGGGCTGCG-GGGGCTTCAGGGGCGGGCTGGACGAACGGGTCGCCGGGCGGCGCCGGGACCTCAGCTCTGCAGACCCCTCCTCCCTGCGCATCACCCTTCTCCCGCATTGTCTGCTTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTTGGGAGACGTCGCTGCTTTCCGGGTGGGGGGCGCGCCCGGCCGCCGATGCTACCTCAGGCGCTCCGCCCCCAGCGAGG-CCCCGAATCCCTGCCCCGGGTCCTCGGGTCGGCGCCGCCGGGGCGGGCTCACTCCTCCCCTGGGGCGGGCGGCCGCGGTGTGGAGTCCGCGCCGTGAACAAGTGCTGCGGGCGCGAGGGAGCGGCTCCCC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       156360 386 +    378907 -------CGGTGGGGCGGGCCCCGGAGGAGGGGCGGGGGCTGCG-GGGGTTTTGGGGGCGGGCTGGACAGACGGGTCGCCGGGCGGCGCCGGGACCTCAGCTCTGCGGACCCCTCCTCCCTGCGCATCACCCTTCTCCCGCATTGTCTTCTTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTTAGAGGCCGTCGCCGCTTTCCGGGTGGGGGGCGCGCCTGGCCGCCGATGCTACCTCAGGCGCTCCGCCCCCAGCGAGG-CCCCGAATCCCTGCCCCGGGTCCCCGGGTCGGCG-CGCCGGGGCGGGCTCACTCCTCCCCTGGGGCGGGCGGCCGCGGTGTGGAGTCCGCGCCGTGAACAAGTGCTGCGGGCGCGAGGGAGCGGCTCCCC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106469035 346 - 171882078 -------AGGTGGGGCGGGCTCCGGA------------GCTGCGCAGGGCTTCCGgggcaggcgggacggacgggtagccgggcggcgcgggGACCTCAGCTTTGCAGACCCCTCCTCTCTGCGCATCACCCTTCTCCCGCATTGTCTGCTTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTT-GGGGCCGTCGCCGCTTTCCGGGTGGGGGGCGCGCCCGGCCGCGGAT----------------------------GG-CCCCGAA-CCCTGCCCCGGGTCCTCTGGGTGGCGCTGCTGGGGCGGGCTCACTCCTCCCCTGGGGCCGGCGGCCTCCGTTTGGAGTCCGCGCCCGGAACAAGTGCTGCGGGAGCGGGGGAGCGGCTCCCC
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011056v1      6185462 346 +   6271500 -------AGGTGGGGCGGGCCCCGGA------------GCTGCGCGGGGCTTCCGgggcaggcgggacggacgggtagccgggcggcgcgggGACCTCAGCTTTGCGGACCCCTCCTCTCTGCGCATCACCCTTCTCCCGCATTGTCTGCTTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTT-GGGGCGGTCGCCGCTTTCCGGGTTGGGGGCGCGCCCGGCCGCGGAT----------------------------GG-CCCCGAA-CCCTGCCCCGGGTCCTCTGGGTGGCGCTGCTGGGGCGGGCTCACTCCTCCCCTGGGGCCGGCGGCCTCGGTTTGGAGTCCGCGCCCGGAACAAGTGCTGCGGGAGCGGGGGAGCGGCTCCCC
i macNem1.NW_012011056v1    C 0 I 1
s cerAty1.NW_012001384v1      5103189 346 +   5160157 -------AGGTGGGGCGGGCCCCGGA------------GCTGCGCTGGGCTTCCGGGGCAGGTGGGACGGACGGGTAGCCGGGCGGCGCGGGGACCTCAGCTTTGCGGACCCCTCCTCTCTGCGCATCACCCTTCTCCCGCATTGTCTGCTTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTT-GGGGCGGTCGCCGCTTTCCGGGTGGGGGGCGCGCCCGGCCGCGGAT----------------------------GG-CCCCGAA-CCCTGCCCCGGGTCCTCTGGGTGGCGCTGCTGGGGCGGGCTCACTCCTCCCCTGGGGCCGGCGGCCTCCGTTTGAAGTCCGCGCCCGAAACAAGTGCTGCGGGAGCGTGGGAGCGGCTCCCC
i cerAty1.NW_012001384v1    C 0 I 1
s chlSab2.chr29              20312526 347 -  24206276 -------AGGTGGGGCGGGCCCCGGA------------GCTGCGCGGGGCTTCCGgggcaggcgggacggacgggtagccgggcggcgcgggGAGCTCAGCTTTGCGGACCCCTCCTCTCTGCGCATCACCCTTCTCCCGCATTGTCTGCTTGGGGCTCGGCGCGCCTCCCACTCCGCAGCCCAACTTGGGGGCCGTCGCCGCTTTCCGGGTGGGGGGCGCGCCCGGCCGCGGAT----------------------------GG-CCCCGAA-CCCTGCCCCGGGTCCTCTGGGTGGCGCTGCTGGGGCGGGCTCACTCCTCCCCTGGGGCTGGCGGCCTCCGTTTGGAGTCCGCGCCCGGAACAAGTGCTGCGGGAGCGGGGGAGCGGCTCCCC
i chlSab2.chr29             C 0 I 1
s calJac3.chr10             113947431 346 - 132174527 AGC-------------------------------------------GGGCTTTAGGGGCGGGCGGGACGGACGGGTTGCCTGGCGGCGCCGGGACCTCTACTCTGCGGACCCCTCCTCCCTTCGCATCACCCTTCTCCCGCATTGTCTGTTCCGGGCTCGGCGCGCTTCCCACCCCGCGGCGCCGCTT-GGGTCAGTCACCGCTTTCCGGGTCGGAGACGCGCTCGGCCGCGGAGGCCTCCTCAGTCG------CCCCAGTGAGGCCCCCGAACCCCTggcccgggtccccgggtcggcgccgcgggggcgggcccgcTCCTGCCGTGGGGCTGGCGGCCGCGGTGTGGAGTGCGCGCCTCGAACAAGTGCTGCGCGCGCGAGGGAGCGGTTCTCC
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2935522 391 -  42888418 GGCCGCTCGGTGAGGCGGGCCTCGGAGGAGGGGCG---GCCTTGGGGGGCTTTGGGGGCGGGCGGGACGGACGGGTTGCCTGGCGGCGCCGGGACCTCTGCTCTGCGGACCCCTCCTCCTTTCGCATCACCCTTCTCCTGCATTGTCTGTTCGGGGCTCGGCGCGCCTCCCACCCCGCAGCGCCACTT-GGGTCAGTCGCCGCTCTCCGGGTCGGAGACGCGCTCGGCCGCGGAGGCCCCCTCAGGCGCCCCGCCCCCAGTGAGG-CCCCGAACCCCTGGCCAGGGTCCCCGGGTCGGCGCCGCGGGGGCGGCCCCACTCCTCCCCTGGGGCTGGCGGCAGCGGTGTGGAGTCCGCGCCGCGAACAAGTGCTGCGGGCGCGAGGGAGCGGTTCCCC
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e panPan2.chr15              83290024 949 +  99763055 M
e colAng1.NW_012116021v1       272851 482 +   4111199 I
e manLeu1.NW_012105520v1       527403   0 -   1458659 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=260073.000000
s hg38.chr15_KI270850v1_alt    144887 88 +    430880 GGGGCCGACGCGGACGGTAAACCTGTCCGGCGGCGCCCGCCTGCTGGGGCCTCTCCGCTGTTTCTCGCGGGCGCGGCCCGGCTGAAAC
s panTro5.chr15              66054531 87 +  83230942 GGGGTCGACGCGGACGGTAAACACGTCGGGCCGCGCCTGCCTGTGGGTGCCTCTCCGCGGCTTCTCGGGGGCGCGGCCCAGCTG-ACC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       156746 87 +    378907 GGGGTCGACGCGGACGGTAAACACGTCGGGCCGCGCCTGCCTGTCGGTGCCTCTCCGCGGCTTCTCGGGGGCGCGGCTCAGCTG-ACC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106469382 86 - 171882078 GGGGCCGACGCAGACGGTAAATCTGTCCGACGGCGCCCGCCTGCTGGGG--TCTCCGCTGCTTGTCCCGGACGCGGCCCGGCTGAAAC
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011056v1      6185809 86 +   6271500 GGGGCCGACGCAGACGGTAAATCTGTCCGACGGCGCCCGCCTGCTGGGG--TCTCCGCTGCTTCTCCCGGACGCGGCCCGGCTGAAAC
i macNem1.NW_012011056v1    I 1 C 0
s cerAty1.NW_012001384v1      5103536 86 +   5160157 GGGGCCGACGCAGACGGTAAATCTGTCCGACGGCGCCCGCCTTCTGGGG--TCTCCGCTGCTTCTCCTGGACGCGGCCCGGCTGAAAC
i cerAty1.NW_012001384v1    I 1 I 890
s chlSab2.chr29              20312874 86 -  24206276 GGGGCCGACGCAGATGGTAAATCTGTCCGACGGCGCCCGCCTGCTGGGG--TCTCCGCTGCTTCTCCCGGACGCGGCCCGGCTGAAAC
i chlSab2.chr29             I 1 C 0
s manLeu1.NW_012105520v1      1067582 86 +   1458659 GGGGCCGACGCAGACGGTAAATCTGTCCGACGGCGCCCGGCTGCTGGGG--TCTCCGCTGCTTCTCCCGGACGCGGCCCGGCTGAAAC
i manLeu1.NW_012105520v1    I 75 C 0
s calJac3.chr10             113947777 88 - 132174527 GGGGCCGACCCGGGCGGTAAACACGTCGGGCCGCGCCCGCCTGCCGGGGCCGTTCTGCGCCTCCTCGGGGGCGCCGCCGGGCTGAAAC
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2935913 88 -  42888418 GGGGCCGACCCGGGCGGTAAACACGTCGGGCCGCGCCCGCCTGCCGGGGCCGTTCTGCGCCTTCTCGGGGGCGCGGCCAGGCTGAAAC
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e panPan2.chr15              83290024 949 +  99763055 M
e colAng1.NW_012116021v1       272851 482 +   4111199 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=68099.000000
s hg38.chr15_KI270850v1_alt    144975 42 +    430880 TGCGACCGTCGGAGGCGAGCGGCC--------------------------CTCTGGGACCCGTG----CAGC
s panTro5.chr15              66054618 72 +  83230942 CGCGCGGGTCGCAGGCGAGCGGCCCAGGAGACCCGTGCGGTCCCCACGCGCTCTGGGACCCGTGCAGCCAGC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       156833 72 +    378907 CGCGCGGGTCGTAGGCGAGCGGCCCAGGAGACCCGTGCGGTCCCCTCGCGCTCTGGGACCCGTGCAGCCAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106469468 41 - 171882078 CCCGCCGCTCCGAGTCGAATGACCCAGGAGACCTGTGCGGT-------------------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6185895 41 +   6271500 CCCGCCGCTCCGAGTCGAATGACCCAGGAGACCTGTGCGGT-------------------------------
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20312960 41 -  24206276 CCCGCCGCTCCGAGTCGAATGACCCAGGAGACCTGTGCGGT-------------------------------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1067668 41 +   1458659 CCCGCCGCTCCGAGTCGAATGACCCTGGAGACCTGTGCGGT-------------------------------
i manLeu1.NW_012105520v1    C 0 C 0
s calJac3.chr10             113947865 68 - 132174527 CGCGCGGGTCTGAGGCGAGCGGCCCAGGAGACCTGTGCGGTCCTCACGCACTTTGCGACCATTGCAGC----
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2936001 68 -  42888418 CGCGCTGGTCGGAGGCGAGCGGCCCAGGAGACCTGTGCGGTCCCCATGCGCTCTGGGACCCGTGCAGC----
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e panPan2.chr15              83290024 949 +  99763055 M
e colAng1.NW_012116021v1       272851 482 +   4111199 I
e cerAty1.NW_012001384v1      5103622 890 +   5160157 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=226573.000000
s hg38.chr15_KI270850v1_alt    145017 101 +    430880 CGGTCCACCTTGCAGCTATACTTTGAGACTAAACA-----------------------------------------------ttttttttttttttttttGCAAAGGCAAACCG--GTATGTGAAGTTGAAAAAATCAAAAACCCTCAAA
s panTro5.chr15              66054690 140 +  83230942 CGGCTCAGCTTGCAGCTATACTTTGAGACCAAACAAAAC-----TTTTTTTTTTTTTTTTGGTAAATACGGCTTACTGCC--ttttttttttttttttttGCAAAGCCA---CGAAGTATGTGAAGTTGAAAAAAGGAAAAACCCTAAAA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       156905 139 +    378907 CGGCTCAGCTTGCAGCTATACTTTGAGACCAAACAAAAC--------TTTTTTTTTTTTTGGTAAATACGGCTTACTGCCtttttttttttttttttttCGCAAAGCCA---CGAAGTATGTGAAGTTGAAAAAAGGAAAAACCCTAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106469509  96 - 171882078 CGGTCCAACTTGCAGCTATACTTTGAGACTAATC---------------------------------------------------TTATTTTTTTTTTTTGTAAAGGCAAACCG--GTATGTGAAATTG-AAAAAGGAAAAACCCTCAAA
i macFas5.chr7              C 0 I 4
s macNem1.NW_012011056v1      6185936  95 +   6271500 CGGTCCAACTTGCAGCTATACTTTGAGACTAATC---------------------------------------------------TTACTTTTTTTTTTT-TAAAGGCAAACCG--GTATGTGAAATTG-AAAATGGAAAAACCCTCAGA
i macNem1.NW_012011056v1    C 0 I 4
s chlSab2.chr29              20313001 101 -  24206276 CGGTCCAACTTGCAGCTGTACTTTGAGACTAATCt-----------------------------------------------ttttttttttttttttttGTAAAGGCAAACCG--GTATGTGAAATTGAAAAAAGGAAAAACCCTCAAA
i chlSab2.chr29             C 0 I 4
s manLeu1.NW_012105520v1      1067709  93 +   1458659 CGGTCCAACTTGCAGCTATACTTTGAGACTAATC---------------------------------------------------TTATTTTTTTTTTTTGGAAAGGCAAACCG--GTATGTGAAATTGAAAAAAGGAAAAACCCT----
i manLeu1.NW_012105520v1    C 0 I 4
s colAng1.NW_012116021v1       273333  93 +   4111199 CGGTCCAACTTGCAGCTGTACTTTGAGACTAATC---------------------------------------------------TTA----TTTTTTTTGTAAAGGCAAACCG--GTATGTGAAATTGAAAAAAGGAAAAACCCTCAAA
i colAng1.NW_012116021v1    I 482 I 154
s calJac3.chr10             113947933 138 - 132174527 TGGCTCAACTTGCAGCTATATCTTGAGAGCAAACAAAACAAAACACTTTTTTTTTTTTTTTGTAAGTATGGCTCACTGCC-------TTTTTTTTTTTTTGCAAAGCCA-ACCA--GTTTGTGAAGTTGAAAAA-GGAAAAACCCTC-AA
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2936069 136 -  42888418 CGGCTCAACTTGCAGCTGTATCTTGAGAGCAAACAAAACAAAACA---TTTTTATTTTTTTGTAAATATGACTCATTGCC--------TTTTTTTTTTTTGCAAAGCCA-ACCA--GTATGTGAAGTTGGAAAATGGAAAAACCCTCAAA
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e panPan2.chr15              83290024 949 +  99763055 M
e cerAty1.NW_012001384v1      5103622 890 +   5160157 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=-3.000000
s hg38.chr15_KI270850v1_alt    145118 22 +    430880 ttttccttctttt-----------ttttttttt
s panTro5.chr15              66054830  6 +  83230942 ---------------------------CTTTTT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       157044  6 +    378907 ---------------------------CTTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106469609 29 - 171882078 ctttctttctctc----ctctctctctctttct
i macFas5.chr7              I 4 C 0
s macNem1.NW_012011056v1      6186035 25 +   6271500 ctttctttctctc--------ctctttctttct
i macNem1.NW_012011056v1    I 4 C 0
s chlSab2.chr29              20313106 33 -  24206276 ctttctttctctcctctctctctctctctttct
i chlSab2.chr29             I 4 C 0
s manLeu1.NW_012105520v1      1067806 33 +   1458659 ctttctttctctcctctctctctctctctttct
i manLeu1.NW_012105520v1    I 4 C 0
s calJac3.chr10             113948071 16 - 132174527 ----------------CGTCCCCCCCCCCTTT-
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2936205 16 -  42888418 ----------------CTTCCCCCTCCCCCTT-
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e panPan2.chr15              83290024 949 +  99763055 M
e colAng1.NW_012116021v1       273426 154 +   4111199 I
e cerAty1.NW_012001384v1      5103622 890 +   5160157 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=284.000000
s hg38.chr15_KI270850v1_alt    145140 6 +    430880 --tttttt
s panTro5.chr15              66054836 6 +  83230942 --TAAAAA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       157050 6 +    378907 --TTAAAA
i gorGor5.CYUI01015946v1    C 0 I 1
s macFas5.chr7              106469638 6 - 171882078 --tttttA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6186060 6 +   6271500 --tttttA
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20313139 6 -  24206276 --TTTTTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1067839 6 +   1458659 --ttttTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       273580 6 +   4111199 --tttttA
i colAng1.NW_012116021v1    I 154 C 0
s calJac3.chr10             113948087 6 - 132174527 TATTTT--
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2936221 6 -  42888418 TTTTTT--
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e panPan2.chr15              83290024 949 +  99763055 M
e cerAty1.NW_012001384v1      5103622 890 +   5160157 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=864489.000000
s hg38.chr15_KI270850v1_alt    145146 221 +    430880 AAATCAAGAAAGGGGGTAGATAGG-TTTGTTTTGTTTTAGAAATAGTTTTTATAGCAGAGTGATACCGTCACATTTAATGATC------CTACTGTGAATTCAAGAATTCACGATGAAAGTTGGATTGAGCGGTATTTTGGTGTTCATTCTTTGC---TGATACTCATTAATGAAGTTCGTTGGAGAA-TTTATTGCTTCAGTACAGTAAAAAC--CAGTGTGCC-TTTT-------TTTTT
s panTro5.chr15              66054842 219 +  83230942 AAATCAAGAAAGGGTGTAGATAGG-TTTGTTTTGTTTTGGAAATAGTTCTTATAGCAGAGTGATACCGTCACATTTAATTTTC------------TAGATCCCGGAATTCACAATGAAAGTTGGATTGAGCGGTATTTTGGTGTTCATTCTTTGCTAATGACACTCCTTAATGAAGTTATTTGGAGAG-TTTATTGCTTCAGTACAGTAAAAAC--CAGTGTGCCTTTTT-------TTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83290993 218 +  99763055 AAATCAAGAAAGGGTGTAGATAGG-TTTGTTTTGTTTTGGAAATAGTTCTTATAGCAGAGTGATACCGTCACATTTAATTTTC------------TAGATCCCGGAATTCACAATGAAAGTTGGATTGAGCGGTATTTTGGTGTTCATTCTTTGCTAATGACACTCCTTAATGAAGTTATTTGGAGAG-TTTATTGCTTCAGTACAGTAAAAAC--CAGTGTGCC-TTTT-------TTTTT
i panPan2.chr15             M 949 I 22
s gorGor5.CYUI01015946v1       157057 218 +    378907 AAATCAAGAAAGGGGGTAGATAGG-TTTGTTTTGTTTTGGAAATAGTTCTTATAGCAGAGTGATACCGTCACATTTAATTTTC------------TAGATCCCGGAATTCACAATGAAAGTTGGATTGAGCGGTATTTTGGTGTTCATTCTTTGCTAATGACACTCCTTAATGAAGTTATTTGGAGAG-TTTATTGCTTCAGTACAGTAAAAAC--CAGTGTGCC-TTTT-------TTTTT
i gorGor5.CYUI01015946v1    I 1 I 2
s macFas5.chr7              106469644 219 - 171882078 AACTCAAGAAAGGGGGTAGATAGG-TTTGTTTTG-----GAAATGGTTCTTATAGCAGAGTGATACCGTCACATTTAATGCTC------CTACTGTGAACTCAGGAATTCACGATGGAAGTTAGATTGAGCGGTATTTTGGTGTTCATTCTTTGC---TGACACTCATTAATGAAGTTATTTGGAGAG-TTGATTGCTTCAGTAGAGTAAAAAC--CAGTGTGCC-tttt----ttgtttgt
i macFas5.chr7              C 0 I 6
s macNem1.NW_012011056v1      6186066 219 +   6271500 AACTCAAGAAAGGGGGTAGATAGG-TTTGTTTTG-----GAAATGGTTCTTATGGCAGAGTGATACCGTCACATTTAATGCTC------CTACTGTGAACTCAGGAATTCACGATGGAAGTTGGATTGAGCGGTATTTTGGTGTTCATTCTTTGC---TGACACTCAGTAATGAAGTTATTTGGAGAG-TTTATTGCTTCAGTAGAGTAAAAAC--CAGTGTGCC-tttt----ttgtttgt
i macNem1.NW_012011056v1    C 0 I 6
s chlSab2.chr29              20313145 216 -  24206276 AACTCTAGAAAGGGGGTAGATAGG-TTTGTTTTG-----GAAATGGTTCTTATAGCAGAGTGATGCCGTCACATTTAATGCTC------CTACTGTGAACTCAGGGATTCACGATGGAAGTTAGATTGAGCGGTATTTTGGTGTTCATTCTTTGC---TGACACTCATTAATGAAGTTATTTGGAGAG-TTGATTGCTTCAGTAGAGTAAAAAC--CAGTGTGCC-TCTT-------TTTTT
i chlSab2.chr29             C 0 I 5
s manLeu1.NW_012105520v1      1067845 216 +   1458659 AACTCAAGAAAGGGGGTAGATAGG-TTTGTTTTG-----GAAATGGTTCTTATAGCAGAGTGATACCTTCACATTTAATGCTC------CTACTGTGAACTCAGGAATTCACGATGGAAGTTAGATTGAGCGGTATTTTGGTGTTCATTCTTTGC---TGACACTCATTAATGAAGTTATTTGGAGAG-TTGATTGCTTCAGTAGAGTAAAAAC--CAGTGTGCC-TTTT-------TTTGT
i manLeu1.NW_012105520v1    C 0 I 6
s colAng1.NW_012116021v1       273586 214 +   4111199 AACTCAAGAAAGGGGGTAGATAGG-TTTGTTTTG-----GAAGTGGTTCTTATAGCAGAGTGATACCGTCACATTTAATGCTC------CTTCTGTGAACTCAGGAATTCACAATGGAAGTTGGATTGAGCGGTATTTTGGTGTTCATTCTTTGC---TGACACTCATTAATGAAGTTGCTTGGAGAG-GTGATTGCTTCAGTAGAGTAAAAAC--CAGTGTGCC-TTTT-------TTT--
i colAng1.NW_012116021v1    C 0 I 3
s calJac3.chr10             113948093 236 - 132174527 AAATCAAGAAAGGGGATAGATAGG-TTTGTTTTGTTTTGGAA---GTTCTTACAGTCGAGTGATACCGTCGGGTTTAATTTTCTAGGTCCTACTGTGAACTCAGGAATTCGCAGTGAAAGTTGGATTGAACTTTATTTTGGTGTTCATTCTTTGCTG-TGACACTCCTTATTGAAGTTATTTGGAGAGTTTTACTGCTTCAGTACAGTAAAAACTGTACTGTGCC-TTTTGTTGTTGTTGTT
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2936227 227 -  42888418 AAACCAAGAAAGAGGGTAGATAGGTTTTGTTTTGTTTTGGAA---GTTCTTATAGCGGAGTGATACCGTCACGTTTAATTTTCTAGGTCCTACTGTGAACTCAGGAATTCGCAGTGAAAGTTGGATTGAGCGTTATTTTGGCGTTCATTCTTTGCTA-TGACACTCCTTAATGAAGTTATTTGGAGAG-TTTATTGCTTCATTACAGTAAAAAC--CAGTGTGCC-TTTT-------TTTTT
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e cerAty1.NW_012001384v1      5103622 890 +   5160157 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=17325.000000
s hg38.chr15_KI270850v1_alt    145367 22 +    430880 GTTACTACT-----------CCCCCCTCC---CCGC
s panTro5.chr15              66055061 21 +  83230942 GTTAGTAGT-----------CCCCGCACA---ACA-
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       157277 22 +    378907 GTTAGTAGTC----------CCCCCCACA---ACA-
i gorGor5.CYUI01015946v1    I 2 C 0
s macFas5.chr7              106469869 21 - 171882078 gttACTACT-----------TCCCCCCCC---ACC-
i macFas5.chr7              I 6 I 6
s macNem1.NW_012011056v1      6186291 21 +   6271500 gttACTACT-----------TCCACCCCC---ACC-
i macNem1.NW_012011056v1    I 6 I 6
s chlSab2.chr29              20313366 21 -  24206276 GTTACTACT-----------TCCCCCCCA---CCC-
i chlSab2.chr29             I 5 I 6
s manLeu1.NW_012105520v1      1068067 20 +   1458659 GTTACTACT-----------TCCCCCCCA----CC-
i manLeu1.NW_012105520v1    I 6 I 6
s colAng1.NW_012116021v1       273803 24 +   4111199 GTTACTACT-----------TCCACCCCACCCCCC-
i colAng1.NW_012116021v1    I 3 I 6
s calJac3.chr10             113948329 29 - 132174527 GTTGCTACTCGCCCTCACCCGCCCCCCCC-------
i calJac3.chr10             C 0 I 3
s aotNan1.NW_018505940v1      2936454 26 -  42888418 GTTGCTACTCTCCCGCA---GCCCCCCAC-------
i aotNan1.NW_018505940v1    C 0 I 3
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e panPan2.chr15              83291211 22 +  99763055 I
e cerAty1.NW_012001384v1      5103622 890 +   5160157 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=2575020.000000
s hg38.chr15_KI270850v1_alt    145389 600 +    430880 ATTGTTTTATTTTTCGAAGAAGCACTTTATTCAGTTTTTCTAAGCCACGGGATTGCCCAGATGAGGACCAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAAGTTTGTGAGGGAGCTAAGATGAGTTGAGATAAACCAGTGTTACTGTTCTTGTATTCTGTCGTGGACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTGGTCCAGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTCTGGCTTATTATATGAACATGATTCTGTTTCACTTCCCCAGATGGAACTAGCTT-AAATGTCTATCATTTATAGTGACAAATGATCAAAATGGCTAGAGTGTCATTTA---TTAACTTCAGTTGTAGTCCTTTACCTTACCTTCTGCTAAATGAAAAAGAAAAATTTGACAAAT-ACTGTGTGCGTCAGTTTGCTCTGAGTGATTTCTCGTGCTAAGTGAGTCCTGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCATTGCCCTTTTAAACTACAGAGCCACTTG
s panTro5.chr15              66055082 591 +  83230942 AGTGTTTTATTTTTCGAAGAAGCAATGTATCCAGTTTTTCTAAGCCACGGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAAGTTTGTGAGGGAGCTAAGATGAGTTGAGATAAATCATTGTTACTGTTCTTGTATTCTGTCGTGGACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTTGTCAAG-TTTGGGTGCACATATTACACTTAATTTGGTTTGTGTGGCTTATTACATGAACATGATTCTGTTTCAGTTCCCCAGATGGAACTAGCTT-AAATGTCTGTCATTCATAGTG------GAGCAAAATGGCCAGAGTGTCATTTATTGTTAACTTCAGTTGTATTCCT-----TTACCATCTGCTAAATGAAAAATAAAAATTTGAGAAAT-ACTGTGTGTGTCAGTTTGCTCAGAGTGATTTCTCGTGCTAAGTGAGTCCTGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGTACAGCCATTGCACTTTTAAATTACAGAGCCGCTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83291233 591 +  99763055 AGTGTTTTATTTTTAGAAGAAGCAGTTTCTTCAGTTTTTCTGAACTGTTGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAAGTTTGTGAAGAAGCTAAGATCAGTTGAGATAAATCATTGTTACTGTTCTTGTATTCTGTCGTGGACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTTTTGTCAAG-TTTGGGTGCACATATTACACTTAATTTGGTTTGTGTGGCTTATTACATGAACATGATTCTGTTTCAGTTCCCCAGATGGAACTAGCTT-AAATGTCTGTCATTCATAGTG------GAGCAAAATGGCCAGAGTGTCATTTATTGTTAACTTCAGTTGTATTCCT-----TTACCATCTGCTAAATGAAAAATAAAAATTTGAGAAAT-ACTGTGTGTGTCAGTTTGCTCTGAGTGATTTCTCGTGCTAAGTGAGTCCTGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGTACAGCCATTGCACTTTTAAATTACAGAGCCGCTTT
i panPan2.chr15             I 22 C 0
s gorGor5.CYUI01015946v1       157299 588 +    378907 AGTGTTTTATTTTTAGAAGAAGCAGTTTCTTCAGTTTTTCTGAACTGTTGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAAGTTTGTGAAGAAGCTAAGATCAGTTAAGATAAATCATTGTTGCTGTTCTTGTATTCTGTCGTGGACTGTTGGGGATTTGCAGGCTGCATTAAGTACAAGTTTTGTCAAG-TTTGGGTGCACATATTACACTTAATTTGGTTTGTGTGGCTTATTATATGAACATGATTCTGTTTCAGTTCCCCAGATGGAACTAGCTTAAAAAGTCTGTCATTCATAGTG------GAGCAAAATGGCCAGAGTGTCATTTATTGTTAACTTCAGTTGTATTCCT-----TTACCATCTGCTAAATGAAAAAGAAAAATTTGAGAAAT-ACTGTGTGTGTCAGTTTGCTCAGAGTGATTTCTCGTGCTAAGTGAGTCCTGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAA----AATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGTACAGCCATTGCACTTTTAAATTACAGAGCCGCTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106469896 599 - 171882078 ATTGTTTTAATTTTCGAAGAAGCAGTTGTTTCAGTTTTTCTAAACCATTGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTGGTTATTGGCAAGTTTGTGAAGAAGCTAAGATCAGTTGAGATAAATCATTGTTACTGTTCTTGTATTCCGTCGTGGACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTGGTCCAGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTGTGGCTTATGATATGAACATGATTCTGTTTCAGTTCCCCAGATGGAACTAGCTT-AAATGTCTGTCATTCATAGTGACAAATGAACAAAATAGCCAGAGTGTCATTTACTGTTAACTTCAGTTGTGTTCCT-----TTACCATCTGCTAAATGAAAAAGAAAAATTTGAGAAATAACTGTGTATGTCAGTTTGCTGTGGGTGATTTCTCATGCTAAGTGAGTCATGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCGATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCGTTGCACTTTTAAACTACAGAGCCAGTTT
i macFas5.chr7              I 6 C 0
s macNem1.NW_012011056v1      6186318 599 +   6271500 ATTGTTTTAATTTTCGAAGAAGCAGTTGTTTCAGTTTTTCTAAACCATTGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTGGTTATTGGCAAGTTTGTGAAGAAGCTAAGATCAGTTGAGATAAATCATTGTTACTGTTCTTGTATTCCGTCGTGGACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTAGTCCAGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTGTGGCTTATTATATGAACATGATTCTGTTTCAGTTCTCCAGATGGAACTAGCTT-AAATGTCTGTCATTCATAGTGACAAATGAACAAAATAGCCAGAGTGTCATTAACTGTTAACTTCAGTTGTGTTCCT-----TTACCCTCTGCTAAATGAAAAAGAAAAATTTGAGAAATAACTGTGTATGTCAGTTTGCTGTGGGTGATTTCTCATGCTAAGTGAGTCATGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCGATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCGTTGCACTTTAAAACTACAGAGCCAGTTT
i macNem1.NW_012011056v1    I 6 C 0
s chlSab2.chr29              20313393 597 -  24206276 ATTGTTTTAATTTTCGAAGAAGCAGTTTATTCAGTTTTTCTAAACCATTGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAAGTTTGTGAAGGAGCTAAGATCAGTTGAG--AAGCCAGTGTTACTGTTCTTGTATTCCGTCGTGGACTCTTGGGGATTTACAGGCTGCATTAAGTACAAGTCTGGTCCAGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTGTGGCTTATTGTATGAACATGATTCTGTTTCAGTTCCCCAGATGGAACTAGCTT-AAATGTCTGTCATTCACAGTGACAAATGAACAAAATAGCCAGAGTGTCATTTACTGTTAACTTCAGTTGTGTTCCT-----TTACCATCTGCTAAATGAAAAAGAAAAATTTGAGAAATAACTGTGTATGTCAGTTTGCTGTGAGTGATTTCTCATGCTAAGTGAGTCATGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCGTTGCACTTTAGAACTATAGAGCCAGTTT
i chlSab2.chr29             I 6 C 0
s manLeu1.NW_012105520v1      1068093 597 +   1458659 ATTGTTTTAATTTTCGAAGAAGCAGTTTATTCAGTTTTTCTAAACCATTGGATTGCCCAGATGAGGACAAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAAGTTTGTGAAGGAGCTAAGATCAGTTGAG--AAACCAGTGTTACTGTTCTTGTATTCCGTCGTGGACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTGGTCCAGTTTTGGGTGCACGTATTCCACTGAATTTGGTTCGTGTGGCTAATGATATGAACATGATTCTGTTTCAGTTCCCCAGATGAAACTAGTTT-AAATGTCTGTCATTCATAGTGACAAATGAACAAAATAGCCAGAGTGTCTTTTACTGTTAACTTCAGTTGTGTTCCT-----TTACCATCTGCTAAATGAAAAAGAAAAATTTGAGAAATAACTGTGTGTGTCAGTTTGCTGTGAGTGATTTCTCATGCTAAGTGAGTCATGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCTTCACCTGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCGTTGCACTTTAAAACTGTAGAGCCAGTTT
i manLeu1.NW_012105520v1    I 6 C 0
s colAng1.NW_012116021v1       273833 597 +   4111199 AGTGTTTTAATTTTCGAGGAAGCAGTTTATTCAGTTTTTCTAAACCATTGGATTGCCCAGATGAGGTCAAACGGTGCAGTTCTTGAAAGGTCATTATTGGCAGGTTTGTGAAGGAGCTAAGATCAGTTGAG--AAACCAGTGTTACTGTTCTTGTATTCCGTCATGGACTCTTAGGGATTTGCAGGCTGCATTAAGTACAAGTCTGGTCCAGTTTTGGGTGCATGTATTCCACTGAATTTGGTTCGTGTGGCTTATTATATGAACATGATTCTGTTTCAGTTCCCCAGATGGAACTAGCTT-AAATGTCTGTCATTCATAGTGACAAATGAACAAAATAGCCAGAGTGTCATTTACTGTTAACTTCAGTTGTGTTCCT-----TTACCGTCTGCTAAATGAAAAAGAAAAATTTCAGAAATAACTGTGTGTGTCAGTTTGCTGTGAGTGATTTCTCGTGCTAAGTGAGTCATGTGGAGAAGCGTTCCTGGGCTTTTCTGGTTTGGTGGGCCTTGTGTTATAAAACCAATTTTCTTCACCGGATGAAGCTAAAGACAAATTTTCTTCAGGCACAGGCGTTGCACTTTAAAACTGTAGAGCCAGTTT
i colAng1.NW_012116021v1    I 6 C 0
s calJac3.chr10             113948361 579 - 132174527 ACTGTTTTATTTTTCGAAGAAGCAGTTTATTCAGTTTTTCTAAACCGTTGGATTGCCCAGATGAGGACAAAAGTTGCAGTTCTTAAAAGGTCATTATTAGCAAGTTTGTGAAGGAGCTGACATCAGTTGAGATAAATCAGTGTTCCCGTTCTTGTATTCCATCGTGTACTCTTGGGGATTTGCAGGCTGCATTAAGTACAAGTCTTGTCAAGTTTTGGGTGCTCGTATCCCAGTGAATTTGGTTCTCGTGGCTTATGAGATGAACGTAATTCTGTTTGAGTTTCCCAGATGGAACTAGCTT-AAATGTCTGTCATTCATAGTG------GAAGAAAATGTCCAGAGTGTCATTTATCGTTAACT-------TGTTCCT-----TTACCACTTGCAAATGAAAAAAGAAAAATTAGAGAAAT-ACTGTGTGTGTCAGTTTGCTTTGAGTGATTTCCCATGCTAAGTGAGTCATGTGGAGAAGCGTTCCTGGGCTTCTC-----TGGTGGGCCTTGTGTTATAAAACTAACTTTCTTCGCCTGATGAAACTAAAGACAAATTTTCTTCAGCTACAGACATTGCACTTTTAAAAC-TAACGTCACTTT
i calJac3.chr10             I 3 C 0
s aotNan1.NW_018505940v1      2936483 586 -  42888418 ATTGTTTTATTTTTCGAAGAAGCAGTTTATTCAGTTTTTCTAAACCGTTGGAGTGCCCAGATGAGGACACAGGGTGCAGTTCTTAAAAGATCATTATTGGCAAGTTTGTGAAGGAGCTGACATCAGTTGAGATAAATCAGTGTTCCTGTTCTTGTATTTCATCGTGGACTCTTGGGGATTTGCAGGCTGCGTTAAATACAAGTCTTGTCAAGTTTTGGGTGCTCGTATTCCACTGAATTTGGTTCTTGTGACTTATGAGATGAACATAATTCTGTTTGAGTTTCCCAGACGGAACTAGCTT-AAATGTCTGTCATTCATAGTG------GAAGAAAATGTCCAGAGTGTCATTTATCGTTAACTTCAGTTGTGTTCCT-----TTACCACCTGCTAAATGAAAAAGAAAAATTTGAGAAAT-ACTGTGTGTGTCAGTTTGCTTTGAGTGATTTCCCATGCTAAGTGAGTCATGTGGAGAAGCATTCCTGGGCTTCTC-----CGGTGGGCCTTGTGTTATAAAACTAACTTTCTTCACCTGATGAAACTAAAGACAAATTTTCTTCAGGCACAGGCATTGCACTTTTAAAAC-TGCAATCACTTT
i aotNan1.NW_018505940v1    I 3 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e cerAty1.NW_012001384v1      5103622 890 +   5160157 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=1773839.000000
s hg38.chr15_KI270850v1_alt    145989 343 +    430880 TAGGATTCACAATACTCACTCAATGGCTTCCCTTCCTGGCAgtgtggttttgtgtgtgtgtgtgattgtgGGGAAGGA----GGCTGACAGAGGTTGGAAGGGATTGTCAGGGAGG--GACATCATGTAAGCAAGTACTA---ACAACATAACGTGACGAGGGCACCAGTTGCTTTCCTTCTGTGGGCGGTGATGGCATGTTATACTGTAGGTACTATTGTTGTAGGATTTCTCACAGTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTATACTATAAATGGActcctcctctagtcctttaactccttgaggg---------------------ctgtgatagaccttatttaactttgtaccct
s panTro5.chr15              66055673 339 +  83230942 TAGGATTCACAGTACTCGCTCCATGGCTTCCCTTCCTGGTTGTGTGGTTT----TGTGTGTGTGATTGTGGGGAAGGA----GGTTGACAGAGGTTGGAAGGGATTGTCAGGGAGG--GACATCATGTAAGCAAGTACTA---ACAACATAACGTGACGAGGGCACCAGTTGCTTTCCTTCTGTGGGCGGTGATGGCATGTTATACTGTAGGTACTATTGTTGTAGGATTTCTCACACTTCTTTTGCCTTGACTAAATGGTAACTGCACACATACTATACTATAAATGGGCTCCTCCTCTAGTCCTTTAACTCCTTGAGGG---------------------CTGTGATAGACCTTATTTAGCTTTTTACCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83291824 339 +  99763055 TAGGATTCACAGTACTCGCTCCATGGCTTCCCTTCCTGGTTGTGTGGTTT----TGTGTGTGTGATTGTGGGGAAGGA----GGTTGACAGAGGTTGGAAGGGATTGTCAGGGAGG--GACATCATGTAAGCAAGTACTT---ACAACATGACGTGACGAGTGCACTAGTTGCTTTCCTTCTCTGGGCGGTGATGGCATGTTGTACTGTAGGTACTATTGTTGTAGGATTTCCCACAGTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTATACTATAAATGGActcctcctctagtcctttaactccttgaggg---------------------ctgtgatagaccttatttagctttttaccct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       157887 340 +    378907 TAGGATTCACAATACTCG--CCATGGCTTCCCTTCCTGGTTGTGTGGTTT----TGTGTGTGTGATTGTGGGGAAGGA----GGTTGACAGAGGTTGGAAGGGATTGTCAGGGAGG--GACATAATGTAAGCAAGTACTACTTACAACATGACGTGACGAGTGCACTAGTTGCTTTCCTTCTGTGGGCGGTGATGGCATGTTATACTGTAGGTACTATTGTTTTAGGATTTCTCACACTTCTTTTGCCTTGACTAAATGGTAACTGCACACATCCTATACTATAAATGGACTCCTCCTCTAGTCCTTTAACTCCTTGAGGG---------------------CTGTGATAGACCTTACTTAGCTTTTTACCGT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106470495 341 - 171882078 TAGGATTCACAATACTCGCTCGATGGCTTCCCTTCCTGGTTGTGTGGT------TGTGTGTGTGATTGTGGGGAAGGAGGTTGGTTGAC--AGGTTGGAAGGGATTGTCAGGGAGG--GACACAATGTAAGCAAGTACTGCTGACAACATAACGTGACGAGTGCACCAGTTGCTTTCCTTCTCTGGGCGGTGATGGCATGTTATCCTGTAGGTACTATTGTTTTAGGATTTCTTACACTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTGTACTATAAATGGACTCCTCCTCTAGTCC-TTAACTCCTTGAGTG---------------------CTGTGATAGACCTTACTTAGCTTTGTACCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6186917 343 +   6271500 TAGGATTCACAATACTCGCTCGATGGCTTCCCTTCCTGGTTGTGTGGTTG----TGTGTGTGTGATTGTGGGGAAGGAGGTTGGTTGAC--AGGTTGGAAGGGATTGTCAGGGAGG--GACACAATGTAAGCAAGTACTGCTGACAACATAACGTGACGAGTGCACCAGTTGCTTTCCTTCTCTGGGCGGTGATGGCATGTTATCCTGTAGGTACTATTGTTTTAGGATTTCTTACACTTCGTTTGCCTTGACTAAATGGTAACTACACACATACTGTACTATAAATGGACTCCTCCTCTAGTCC-TTAACTCCTTGAGTG---------------------CTGTGATAGACCTTACTTAGCTTTGTACCCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5104512 343 +   5160157 TAGGATTCACAATACTCGCTCGATGGCTTCCCTTCCTGGTTGTGTGGTTG----TGTGTGTGTGATTGTGGGGAAGGAGGTTGGTTGAC--AGGTTGGAAGGGATTGTCAGGGAGG--GACACAATGTAAGCAAGTACTGCTGACAACATAACGTGACGAGTGCACCAGTTGCTTTCCTTCTCTGGGCGGTGATGACATGTTACCCTGTAGGTACTATTGTTTTAGGATTTCTCACACTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTGTACTATAAATGGACTCCTCCTCTAGTCC-TTAACTCCTTGAGTG---------------------CTGTGATAGACCTTACTAAGCTTTGTACCCT
i cerAty1.NW_012001384v1    I 890 C 0
s chlSab2.chr29              20313990 343 -  24206276 TAGGATTCACAATACTCGCTCGATGGCTTCCCTTCCTGGTTGTGTGGTTG----TGTGTGTGC--TTGTGGGGAAGGAGGTTGGTTGACAGAGGTTGGAAGGGATTGCCAGGGAGG--GACACAATGTAAGCCAGTACTGCTGACAACATAACGTGACGAGTGCACCAGTTGCTTTCCTTCTCTGGGCGGTGATGGCATGTTATCCTGTAGGTACTATTGTTTTAGGATTTCTCACACTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTGTACTGTAAATGGACTCCTCCTCTAGTCC-TTAACTCCTTGAGTG---------------------CTGTGATAGACCTTACTTAGCTTTGTACCCT
i chlSab2.chr29             C 0 I 10
s manLeu1.NW_012105520v1      1068690 345 +   1458659 TAGGATTCACAATACTCGCTCGATGGCTTCCCTTCCTGGTTGTGTGGTTG----TGTGTGTGTGATTGTGGGGAAGGAGGTTGGTTGACAGAGGTTGGAAGGGATTGTCAGGGAGG--GACACAATGTAAGCAAGTACTGCTGACAACATAACGTGACGAGTGCACCAGTTGCTTTCCTTCTCTGGGCGGTGATGGCATGTTATCCTGTAGGTACTATTGTTTTAGGATTTCTCACACTTCGTTTGCCTTGACTAAATGGTAACTGCACACATACTGTACTATAAATGGACTCCTCCTCTAGTTC-TTAACTCCTTGAGTG---------------------CTGTGATAGACCTTACTTAGCTTTGTACCCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       274430 342 +   4111199 TAGGATTCACAGTACTCGCTCGATGGCTTCCCTTCCTGGTTGTGTGGTTA----TGTGTGTGTGATTGTGGGGAAGGA-GTTGGTTGAC--AGGTTGGAAGGGATTGTCAGGGAGG--GACACAATGTAAGCAAGCACTGTTTATAACATAACTTGATAAGTGCACCAGTTGCTTTCCTTCTCTGGGCGGTGATGGCATGTTATCCTGTAGGTACTATTGTTTTAGGATTTCTTACACTTGGTTTGCCTTGACTAAATGGTAACTGCACACATACTGTACTATAAATGGActcctcctctagtcc-ttaactccttgaggg---------------------ctgtgatagaccttacttagctttgtaccct
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113948940 337 - 132174527 TAGAATTCAGAATATTCGCTCGATGGCCTTCCTTCCTGGTTTTGTGGTTGTG--TGTGTGTGTGATTGTGGAGGAGGA----GGTTGACAGAGGTTAGAAGGGATTGTCAGGGAGGGAGACATAATGTAAACAAGTACTACTTACAGCATAACGTCACAAGTACACCAGTTGCTTTCCTTCCCTGGGCTGTGATGGCGTGTTACACTGTAGATACAATTGTTTTAGGATTTCTCACACTTCATCTGCCTTGACTAAATGGTAACTGCACACATACTG------AAATGGAC---TCCTCTAGTCCTTTAACTCCTTGAGGT---------------------CTGTGATAGACCTTATTTAGCTTTGTACCCT
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2937069 362 -  42888418 TAGGATTCAGAATACTCGCTCGATGGCTTCCCTTCCTGGTtgtgtggttgtg--tgtgtgtgtgattgtgGAGGAGGA----GGCTGACAGAGGTTGGAAGGGATTGTCAGGGAGGGAGACATAATGTAAACAAGTACTACTAACAACATAACGTCATGAGTACACCAGTTGCTTTCCTTCTCTGGGTTGTGATGGCGTGTTATACTGTAGATACAATTGTTTTAGGATTTCTCACACTTCATCTGCCTCGACTAAATGGTAACTGCACACATACTG-----TAAATGGACTCTTCCTCTAGTCCTTTAACTCCTTAAGGTCTGTGATAGACCTTATTTAGCCTGTGATAGACCTTATTTAGCTTTGTACTCT
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=5043590.000000
s hg38.chr15_KI270850v1_alt    146332 1014 +    430880 ctttgccagt----ggttttaacatagtgcaggcccggtatgtgtttgaattgggtaaatTACTTTTACTGCCTAGTGGTAGCTGGTGTACACAGGAGAGGGCCACCAACTCTGGGGACTTGTCCAAAATGACAATTCACTTGCAGATCTCTGATGAAATTTACTTTAAAAGGACTTCTAACCTTTTTTT-T--------AATCTGTCGGTTA-TTTTTTG--AAAAGAAGTGGGGCTTAACTAGTGCTCTAAGGATTTTAACAAGAGATTCCGATTTAGAAATCTG-TTCC-CCC-------TTTTGGTGAAATTATTA-----ttttttttagagtcagaatcttcactgttgcccagttgtct----ccccgggacccaagccgtcctcccacctcagcctcccacagtactggaattacaggcgtgagccaccccacccagcTGGTGAAATTATTAAAATTG-----------TAGTGAAAACTCTGCCTCCATTGTGAAATTGG---AAAAAAATTAGAAATTTTAgaaaaaagtacgccctttggagctaggtagagttcagatccccacatttccattgagtagttgcatagcctctcagagcttcagcttcctactccttaagggttagtaacatgctttgcagtgttgttaggaatcagtgaaactgtgtgagatacttaactgcagtatctaacatggagtaggtagctatttcctggtagctgtaATGATAATAATTTTGATACGTTTTTACATGACTTAAGCATTCTGAAAAGTCTGATGCTTCTGAGTATGGAGGCTTAGCTATTTCTTTCATAAAGAAGGGGCCCTGAGACTTGTGAGTCTTATCCAAATGCGTTTCTTCAAAGGTGTCAGATGAACTGAAGGATAATGGAAACAATAGCAAATTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTTGCAGAGT-ACTTGGTAGGGTAGAGCTC--TTTGTGACTATGCTATTTAGGAAATGGTGAGAGATGGATTGTTTTCAGTACATCAGTCATAAGAGGATATGAG----
s panTro5.chr15              66056012 1026 +  83230942 CTTTGCCGGT----AGTCTTAACATAGTGCAGGCACGGTATGTGTTTGAATTGGGTAAATTATTTTTACTGCCTAGTGGTAGCTAGCGTACACAGGAGAGAGCCACTAACTCTGGGGACCTGTCGAAAATGACAGTTCCCTTGCAGATCTGTGATGACATTTACTTTAAAAG----TCTAACC-TTTTTT-T--------AATCTGTCAATTA-TTTTTTG--AAAAGAAGT-GGGTTTAACTAGCGCTCTAAGGATTTCAACAAGAGGTTCCAATTTAGAAATCGGCCCCC-CCC-------TTTTTGTGAAATTATTAttgttttttttttagagtcggaatcttcactgttgcccaattgtttctaactcctggacccaagccatcctcccacctcagcctcccacagtgttggaattacaggcgtgagccactccacccagtcGGTGAAATTATTAAAATTGTTGGACAAATCTAGTCACAACTCTCCCTCCATTGTGAAATTGG---AAAAAAATTAGAAATTTTAgaagaaagtacaccctttggaactaggtagagttcagatctccacacttccattgactagttgcatagcctcttagagcttcagtttcctactccataagcgttagtaacatgctttgcagtgttgttaggaatcagtgaaactatgtgaggtacttaactacagtatctaacatggagtaggTAGCTATTTCCTGGTAACTGTAATGATAATAATTTTGGTACATTTTTACATGACTTAAGCATTCTTAAAAGTCTGATGCTTCTGAGTGTAGAGGTTTAGCTATTTCTTTCATAAAGAAGGGGCCTTGAGACTTGTGAGTCTTATCGAAGTCTGTTTCTTCAAAGGTGCCAGATGAACTGAAGGATAATGGAAACAATAGCGAGTTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTTGCAGAGTGGCTTGGTAGGGTAGAGCTC--TTTGTGACTATGCTATTTGGGAAACAGTGAGAGATGGATTGTTTTCAGTACATCAGTCATAAGAGGATA--------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83292163 1029 +  99763055 ctttgccggt----agtcttaacatagtgcaggcaccgtatgtgtttgaattgggtaaatTATTTTTACTGCCTAGTGGTAGCTAGCGTACACAGGAGAGAGCCACTAACTCTGGGGACCTGTCCAAAATGACAGTTCACTTGCAGATCTGTGATGACATTTACTTTAAAAGGATTTCTAACC-TTTTTT-T--------AATCTGTCAATTA-TTTTTTG--AAAAGAAGT-GGGTTTAACTAGCGCTCTAAGGATTTCAACAAGAGGTTCCAATTTAGAAATCGGCCCCC-CCC-------TTTTTGTGAAATTATTATTGt-ttttttttagagtcggaatcttcactgttgcccagttgtctctaactcctggacccaagccatcctcccacctcagcctcccacagtgttggaattacaggcgtgagccactccacccagtcGGTGAAATTATTAAAATTGTTGGACAAATCTAGTCACAACTCTCCCTCCATTGTGAAATTGG---AAAAAAATTAGAAATTTTAgaaaaaagtacaccctttggaactaggtagagttcagatctccacacttccattgactagttgcatagcctcttagagcttcagtttcctactccataagcgttagtaacatgctttgcagtgttgttaggaatcagtgaaactatgtgaggtacttaactacagtatctaacatggagtaggTAGCTATTTCCTGGTAACTGTAATGATAATAATTTTGGTACATTTTTACATGACTTAAGCATTCTTAAAAGTCTGATGCTTCTGAGTGTAGAGGTTTAGCTATTTCTTTCATAAAGAAGGGGCCTTGAGACTTGTGAGTCTTATCGAAGTCTATTTCTTCAAAGGTGCCAGATGAACTGAAGGATAATGGAAACAATAGCGAGTTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTTGCAGAGTGGCTTGGTAGGGTAGAGCTC--TTTGTGACTATGCTATTTGGGAAACAGTGAGAGATGGATTGTTTTCAGTACATCAGTCATAAGAGGATA--------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       158227 1029 +    378907 CTTTGCCGGT----AGTCTTAACATAGTGCAGGCACGGTATGTGTTTGAATTGGGTAAATTATTTTTACTGCCTAGTGGTAGCTAGCGTACACAGGAGAGAGCCACTAACTCTGGGGACCTGTCCAGAATGACAGTTCACTTGCAGATCTGTGATGACATTTACTTTAAAAGGATTTCTAACT-TTTTTT-T--------AATCTGTCGGTTATTTTTTTG--AAAAGAAGT-GGGTTTAACTAGCGCTCTAAGGATTTCAACAAGAGATTCCGATTTAGAAATCGG-CCCC-CCC-------TTTTTGTGAAATTATTAttgt-ttttttttagagtcggaatcttcactgttgcccagttgtctctaactcctggacccaagccgtcctcccacctcagcctcccacagtgttggaattacaggcgtgagccactccacccagccGGTGAAATTATTAAAATTGTTGGACAAATCTAGTCACAACTCTCCCTCCATTGTGAAATTGG---AAAAAAATTAGAAATTTTAgaaaaaagtacaccctttggaactaggtagagttcagatctccacacttccattgactagttgcatagcctctcagagcttcagtttcctactccataagcgttagtaacatgctttgcagtgttcttaggaatcagtgaaactatgtgaggtacttaactacagtatctaacatggagtaggtagctatttcctggtagctgtaATGATAATAATTTTGGTACATTTTTACATGACTTAAGCATTCTTGAAAGTCTGATGCTTCTGAGTGTAGAGGTTTAGCTATTTCTTTCATAAAGAAGGGGCCTTGAGACTTGTGAGTCTTATCGAAATCTGTTTCTTCAAAGGTGCCAGATGAACTGAAGGATAATGGAAACAATAGCGAGTTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTAGAAGAGTGGCTTGGTAGGGTAGAGCTC--TTTGTGACTATGCTATTTGGGAAACAGTGAGAGATGGATTGTTTTCAGTACCTCAGTCATAAGAGGATA--------
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106470836 1004 - 171882078 CTTTGCCAGT----AGTCTTAAC--AGTGCAGGCACGGTATGTGTTTGAATTGGGTAAATTATTTTTACTGCCTAGTGGTAGCTAGTGTGCACAGGAAAGAGCCACTAACTCTGGAGACTTGTCCAAAATGACAGTTCACTTGCAGATCTGTGATGAAATTTACTTTAAAAGGATTTCTAAC------TT-AAAAAAAAAAATCTGTCGGTTA-TTACTTATTTAAAGAAGTGGGGCTTAACTGGTGCTCAAAGGATTTCAACAAGAGATTCCGATTTAGAAATCCGTCCCC-CCC-------TTTTGGTGAAACTATTA------tttttttagagtcggaatc-tcactgtttcccagttgtct----gccgggaacccaacccgtcctcccacctcagcctcccacagtgttggaattacaggcctgagccatcccacccagcTGGTGAAATTATTAAAATTG-----------TAGTGACAACTCTCCCTCCATTGTGAAATTGG---AAAAAAATTAGACATTTtagaaaaacgtacaccctttggagctaggtagagttcagatccccacatttccattgactagttgcacagtctctcagagcttcagtttcctactccataaaggttagtaacatgctttgcagagtttttagggatgaatgaaac--tgtgaggtacttaacttcagtatttaacatgaagtaggtagctatttcctggtagctgtaATGATAATAATTTTGATACGTTTTTACATGACTTAAGGTTTCTTAAAAGTCTGATGCTTCTGAGTATAGAGGCTTAGCTATTTCTTTCATAAAGAAGGGGCCCTGAGACTTGTGAGTCTTATAGGAATGCATTTCTT---AGGT--CATGTAAACTGAAGGATAATGGAAACAATAGCGAATTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGAGACTCGCAGAGT-GCTTGGTGGGGTAGAGCTC--TTTGTGACTATGGTATTTAGGAAATGGTGAGAGATGGATTGTTTTCGGTACATCAGTCCTAAGAGGCTA--------
i macFas5.chr7              C 0 I 4
s macNem1.NW_012011056v1      6187260 1004 +   6271500 CTTTGCCAGT----AGTCTTAAC--AGTGCAGGCACGGTATGTGTTTGAATTGGGTAAATTATTTTTACTGCCTAGTGGTAGCTAGTGTGCACAGGAAAGAGCCACTAACTCTGGAGACTTGTCCAAAATGACAGTTCACTTGCAGATCTGTGATGAAATTTACTTTAAAAGGATTTCTAAC------TT-AAAAAAAAAAATCTGTCGGTTA-TTACTTATTTAAAGAAGTGGGGCTTAACTGGTGCTCAAAGGATTTCAACAAGAGATTCCGATTTAGAAATCCGTCCCC-CCC-------TTTTGGTGAAACTATTA------tttttttagagtcggaagc-tcactgtttcccagttgtct----gccgggaacccaacccgtcttcccacctcagcctcccacagtgttggaattacaggcctgagccatcccacccagcTGGTGAAATTATTAAAATTG-----------TAGTGACAACTCTCCCTCCATTGTGAAATTGG---AAAAAAATTAGACATTTtagaaaaacgtacaccctttggagctaggtagagttcagatccccacatttccattgactagttgcacagtctctcagagcttcagtttcctactccataaaggttagtaacatgctttgcagagtttttagggatgaatgaaac--tgtgaggtacttaacttcagtatttaacatgaagtaggtagctatttcctggtagctgtaATGATAATAATTTTGATACGTTTTTACATGACTTAAGGTTTCTTAAAAGTCTGATGCTTCTGAGTATAGAGGCTTAGCTATTTCTTTCATAAAGAAGGGGCCCTGAGACTTGTGAGTCTTATAGGAATGCATTTCTT---AGGT--CGTGTAAACTGAAGGATAATGGAAACAATAGCGAATTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTCGCAGAGT-GCTTGGTGGGGTAGAGCTC--TTTGTGACTATGGTATTTAGGAAATGGTGAGAGATGGATTGTTTTCGGTACATCAGTCCTAAGAGGCTA--------
i macNem1.NW_012011056v1    C 0 M 4038
s cerAty1.NW_012001384v1      5104855 1005 +   5160157 CTTTGCCAGT----AGTCTTAAC--AGTGCAGGCACGGTATGTGTTTGAATTGGGTAAATTATTTTTACTGCCTAGTGGTAGCTAGTGTGCACAGGAGAGAGCCACTAACTCTGGGCACTTGTCCAAAATGACAATTCACTTGCAGATCTGTGATGAAATTTACTTTAAAAGGATTTCTAAC------TTAAAAAAAAAAAATCTGTCGGTTA-TTATTTATTTAAAGAAGTGGGGCTTAACTGGTGCTCTAAGGATTTCAACAAGAGATTCAGATTTAGAAATCCGTCCCC-CCC-------TTTTGGTGAAACTATTA------tttttttagagtcggaatc-tcactgtttcccagttgtct----gccgggaacccaacctgtcctcccacctcagcctcccacagtgttggaattacaggcctgagccatcccacccagcTGGTGAAATTATTAAAATTG-----------TAGTGACAACTCTCCCTCCATTGTGAAATTGG---AAAAAAATTAGACATTTtagaaaaacgtacaccctttggagctaggtagagttcagatccccacatttccattgactagttgcatagtctctcagagcttcagtttcctactccataagggttagtaacatgctttgcagagtttttagggatgaatgaaac--tgtgaggtacttaacttcagtatttaacatgaagtaggtagctatttcctggtagctgtaATGATAATAATTTTGATACGTTTTTACATGACTTAAGCTTTCTTAAAAGTCTGATGCTTCTGAGTATAGAGGCTTAGCTATTTCTTTCATAAAGAAGGGGCCCTGAGAATTGTGAGTCTTATAGGAATGCATTTCTT---AGGT--CATGTAAACTGAAGGATAATGGAAACAATAGCGAATTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTCGCAGAGG-GCTTGGTGGGGTAGAGCTC--TCTGTGACTATGGTATTTAGGAAATGGTGAGAGATGGATTGTTTTCAGTACATCAGTCGTAAGAGGATA--------
i cerAty1.NW_012001384v1    C 0 I 4
s chlSab2.chr29               4012262 1007 +  24206276 gtgtgccagt----agtcttaacatagcgcaggcacagtatgtgtttgaattgggtaaatTATTTTTACTGCCTAGTGGTAGCTAGTGTGCACAGGAGAGAGCCACTAACTCTGGGCACTTGTCCAAAATGACAATTCACTTGCAGATCTGTGATGAAATTTACTTTAAAAGAATTTCTAACC-TTTTTT-T-------AAATCTGTCAGTTA-TTTTTTG--AAAAGAAGTGGGGCTTAACTAGTGCCCTAAGGATTTCAACAAGAGATTCTGATTTAGAAATCTGCCCCC-CCTCCCCCCGTTTTGGTGAAATTATTA------tttttttagagtcggaatc-tcactgtttcccagttgtct----cccggggacccaagccatcctcccacctcagtctcccacagtgtttgaattacggatgtgagccaccccacccaacTGGTGAAGTTATTAAAATTG-----------TAGTGACAACT----CTCCATTGTGAAATTGG---AAAAAAATTAGAAATTTAAAAaaaacgtacaccctttggagctaggtagagttcacatccccacatttccattgactagttgcatagcctctcagagcttcagtttcctactctgtaagggttagtaacatgctttgcagtgttcttagaaatcagtgaaactatgtgaggtacttaactgcagtatctaacgtggaataagtagctatttcctggtagctGTCATGAGAATAATTTTGATACATTTTT-----ACTTAAGCATTCTTAAAAGTCTGATGCTTCTGAGTATAGAGGCTTAGCTAATTCTTTCATAAAGAAGGGGCCTTGAGACTTGTGAGTCTTATCTAAATCTGTTTCTTCAAAGGTGCCAGATGAACTGAAGGATAATGGAAACAATAGCGAGTTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTTGCAGAGT-GCTTGGTGGGGTAGAGCTC--TTTGTGACTGTGTTATTTAGGAAACAGTGCGAGATGGATTGTTTTCAGTTCATCAGTCATAAGAGGATA--------
i chlSab2.chr29             n 10 I 2
s manLeu1.NW_012105520v1      1069035  998 +   1458659 CTTTGCCAGT----AGTCTTAAC--AGTGCAGGCACGGTATGTGTTTGAATTGGGTAAATTATTTTTACTGCCTAGTGGTAGCTAGTGTGCACAGGAGAGAGCCACTAACTCTGGAGACTTGTCCAAAATGACAGTTCACTTGCAGATCTGTGATGAAA------TTAAAAGGATTTCTAAC------TT-TAAAAAAAAAATCTGTCGGTTA-TTATTTATTTAAAGAAGTGGGGCTTAACTGGTGCTCTAAGGATTTCAACAAGAGATTCCGATTTAGAAATCCGTCCCC-CCT-------TTTTGGTGAAACTAtta------tttttttagagtcggaatc-tcactgtttcccagttgtct----gccgggaacccaacctgtcctcccacctcagcctcccacagtgttggaattacaggactaagccatcccacccagcTGGTGAAATTATTAAAATTG-----------TAGTGACAACTCTCCCTCCATTGTGAAATTGG---AAAAAAATTAGACATTTtagaaaaacgtacaccctttggagctaggtagagttcagatccccacatttccattgactagttgcatagtctctcagagcttcagtttcctactccataagggttagtaacatgctttgcagaatttttagggatgaatgaaac--tgtgaggtacttaacttcagtatttaacatgaagtaggtagctatttcctggtagctgtaATGATAATAATTTTGATACGTTTTTACATGACTTAAGCTTTCTTAAAAGTCTGATGCTTCTGAGTATAGAGGCTTAGCTATTTCTTTCATAAAGAAGGGGCCCTGAGAATTGTGAGTCTTATAGGAATGCATTTCTT---AGGT--CATGTAAACTGAAGGATAATGGAAACAATAGCGAGTTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTCGCAGAGT-GCTTGGTGGGGTAGAGCTC--TCTGTGACTATGGTATTTAGGAAATGGTGAGAGATGGATTGTTTTCAGTACATCAGTCCTACGAGGCTA--------
i manLeu1.NW_012105520v1    C 0 I 4
s colAng1.NW_012116021v1       274772 1007 +   4111199 cTTTGCCAGT----AGTCTTAAC--AGTGCAGGCACGGTATGTGTTTGAATTGGGTAAATTATTTTTACTGCCTAGTGGTAGCTAGCGTACTCAGGAGAGAGCCACTAACTCTGGGGACTTGTCCAGAATGACAATTCACTTGCAGATCTGTGATGAAATTTACTTTAAAAGGATTTCTAAC------TT-T-TAAAAAAAATCTGTCGGTTA-TTATTTATTTAAAGAAGTAGGGCTTAACTAGTGCTCTAAGGATTTCAACAAGAGATTCCGATTTAGAAATCCCCCCCC-CCCGGCC---TTTTGGTGAGATTATTA------tttttttagagtaggaatc-tcagtgtttcccagttgtct----gccgggaacccaacccatcctcccacctcagcctcccacagtgttggaattacaggcctgagccatcccacccagcTGGTGAAATTATTAAAATTG-----------TAGTGACAACTCTCCCTCTATTGTGAAATTGG---AAAAAAATTAGACATTTtagaaaaacgtacaccctttggagctaggtagagttcagatccccacgtttccattgactagttgcatagcctctcagagcttcagtttcctactccataagggttagtaacatgctttgcagtgtttttagggatgaatgaaac--tgtgaggtacttaactgcagtatttaacatgaagtaggtagctatttcctggtagctgtaATGATAATAATTTTGATATGTTTTTACATGACTTAAGCATTCTTAAAAGTCTGATGCTTCTGAGTATAGAGACTTAGCTATTTCTTTCATAAAGAAGGGGCCCTGAGACTTGTGAGTCTTATAGTAATGCATTTCTT---AGGT--CATGTAAACTGAAGGATAATGGAAACAATAGCGAGTTTATCTTCTCAGTCACCTGTGAGTCTTCCTTTGAGAGTGGGACTCGCAGAGT-GCTTGGTGGGGTAGAGCTC--TTTGTGACTATGGTATTTAGGAAATAGTGAGAGATGGATTGTTTTCAGTACATCAGTCATAAGAGGATA--------
i colAng1.NW_012116021v1    C 0 I 4
s calJac3.chr10             113949277 1031 - 132174527 CTTTGTCAGTAAAGAGTTTTAACATAGTGCAGGCAGAGTATGTATTTGAATTGGGTAAATTATTTTTACTGCCTAGTGGTAGCTAGCGTACACAGGAGGGAGCCACTAACTCTGGGGACTTGTTCAGAATGACAGTTAACTTGGGGCTCTGTAATGAAATGTATTTTAAAAGGATTTTTAGCC-----TT-T---TAAAAAATCT----GTTA-TTTTTTG--AAAAGAAGTGGGGCTTAACTAGTGCTCTAAGGATTTCAACAAGAGATTCCGATTTAGAAATCCCACCCCACCC-------CTTGGGTGAAATTAttt----tttttttttagagccagagta-tcactgtttcccagctttctctaactcctggacccaagccatcctcccacctcagcctcccacagtgttggaattacaggcgtgatccaccccacccagcTGGTGAAATTATTAAAATTGTTGGACAAATCTAGTCACAACTCTCCCTCCATTGGGAAATTGGAAAAAAAAAATGAGAAGTTTTAgaaaaaagtacatgctttggagctaggtaaagttcagatccgcacatttccattgaccagttgcatagcctgtcagagcgtcagtttcctaccccctaagggttagtgacatgctttgcagtgttctcaggaataaatgaagctgtgtgaggtattt-actacagtacctaacacgaagtaggTAGCTATTTCCTCGTAGCTGTAATGATAATAATTGTGATACGTTTTTACATGACTTAAGCATTCTT--AAGTCTGATGCTTCTAAGTATAGAGGTTTAGCGATTTCGTCCATAAATAAGGGGCCCTGAGACTGGTGAGTCTTATCCAAATGCATTTCTC-AAAGGTGCCAGATGAACTGAAGGATAATGGAAACAGTAGTGAGTTTATCTTCTCAGTCACCTGTTAGTCTTCCTTTGAGAGTGGGACTTGCAGAGTGGCTTGGTAGGGTAGAGCTC--TTTGTGGCTGTGGTATTTAGAAAACGGTGAGAGATGGATTGTTTTCAGTATATCAGTCATAAGAGGATA----TGAG
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2937431 1034 -  42888418 CTTT---AGTAAGGAGTCTTAACATAGTGCAGGCACAGTATGTATTTGAATTGGGTAAATTATTTTTACTGCCTAGTGGTAGCTAGCGTACATAGGAGAGAGCCACTAACTCTGGGGACTTGTCCAAAATGACAATTAACTTGGGGCTCTGTGATGAAATTTGTTTTAAAAGGATTTCTAACC-----TT-T---TTAAAAATCTGTTGGTTA-TTTTTTG--AAAAGAAGTGGGGCTTAACTAGTGCACTAAGTATTTCAACAAGAGATTCCGATTTAGAAATCCCACCCC-CAC-------CTTGGGTGAAATTATTA----tttttttttagagccggagta-tcactatttcccagttgtctctaactcctggacccaagccatcctcccacctcagcctcccacagtgttggaattacaggcgtgagccaccccacccagcTGGTGAAATTATTAAAATTGTTGGACAAATCTAGTCACAATTCTCCCTCCATTGGGAAATTGGAAAAAAAAAATGAGAAATTTTAGCaaaaagtacactctttggagctaggtagagttcagatctgcacatttccattgaccagttgcatagcctgtcagagcgtcagtttcctactccctaagggttggtgacatgctttgcagcgttctcaggaataaatgaaactatgtgaggtactt-actacagtacctaacacgaagtaggTAGCTATTTCCTTGTAGCTGTAATGATAATAATTGTGATAC-TTTTTACATGACTTAAGCATTCTTAAAAGTGTGATGCTTCTAAGTATAGAGGTTTAGCGATTTCTTCCATAAATAAGGGGCCCTGAGACGTGTGAGTCTTATCCAAATGCATTTCTC-AAAGGTGCCAGATGAACTGAAGGATAATGGAAATAATAGTGAATTTGTCTTCCCAGTCACCTATTAGTCTTCCTTGGAGAGTCGGACTTGCAGAGTGACTTGGTAGGGTAGAACTCTTTTTGTGACTGTGGTATTTAGGAAGCGGTGAGAGCTGGATTGTTTTCAGTACATCAGTCATAAGAGGATA----TGAG
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280    0 +   1024465 I
e otoGar3.GL873530           29687845    0 +  36342412 I
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307    0 +   3282555 I

a score=454674.000000
s hg38.chr15_KI270850v1_alt    147346 112 +    430880 TGAGTTCCAACTTT-----CCTTATTTT-ACCTTAGTCTTGACAAATAACAAGTATGGATTATGTCTGTATTTCTCAGACTTGTTTAAGGTAGAACTGGACTGGGTGTTAACAGTGTT
s panTro5.chr15              66057038 105 +  83230942 TGAGTTCCAACT---------TTATTTT-ACCTTAGTCTTGGCAAAT---AAGTGTGGATTGTGTCTGTATTTCTCAAACTTGTTTAAGGTAGAGCTGGACTGAGTGTTAACAGTGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83293192 105 +  99763055 TGAGTTCCAACT---------TTATTTT-ACCTTAGTCTTGGCAAAT---AAGTGTGGATTGTGTCTGTATTTCTCAAACTTGTTTAAGGTAGAGCTGGACTGAGTGTTAACAGTGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       159256 112 +    378907 TGAGTTCCAACTTT-----CTTTATTTT-ACTTTAGTCTTGGCAAATAACAAGTGTGGATTATGTCTGTATTTCTCAAACTTGTTTAAGGTAGAGCTGGACTGGGTGTTAACAGTGTT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106471844 112 - 171882078 GTACTTCCAACTTT-----CTTTATTTT-ACCTTAGTCTTGACAAATAACAAGTGTGGATTATGTCTGTATTTCTCAGACTTGTTTAAGGTAGAACTGGACTGGGTGTTAACAGTGTT
i macFas5.chr7              I 4 C 0
s cerAty1.NW_012001384v1      5105864 112 +   5160157 TTAGTTCCAGCTTT-----CCTTATTTT-ACCTTAGTCTTGACAAATAACAAGTGTGGATTATATCTGTATTTCTCAGACTTGTTTAAGGTAGAACTGGACTGGGTGTTAACAGTGTT
i cerAty1.NW_012001384v1    I 4 I 2445
s chlSab2.chr29               4013271 110 +  24206276 --TGTTCCAATTTT-----CTTTATTTT-ACCCTAGTCTTGACAAATAATAAGTGTGGAATATGTCTGTATTTGTCAGACTTGTTTAAGGTGGAACTGGACTGGGTGTTAACAGTGTT
i chlSab2.chr29             I 2 C 0
s manLeu1.NW_012105520v1      1070037 112 +   1458659 GTAGTTCCAACTTT-----CTTTATTTT-ACCTTAGTCTTGACAAATAACAAGTGTGGATTATATCTGTATTTCTCAGACTTGTTTAAGGTAGAACTGTACTGGGTGTTAACAGTGTT
i manLeu1.NW_012105520v1    I 4 C 0
s colAng1.NW_012116021v1       275783 112 +   4111199 TTAGTTCCAACTTT-----CTTTATTTT-ACCTTAGTCTTGACAAATAACAAGTGTGGATTATGTCTGTATTTCTCAGACTTGTTTAAGGTAGAACTGGACTGGGTGTTAACTGTGTT
i colAng1.NW_012116021v1    I 4 C 0
s calJac3.chr10             113950308 116 - 132174527 TTAGTTCCAACTTTTTTTCCTTTTTTTTAACCTTAGTCTTGAAAAGTAATAAGTATGGATTATGTC--TATTTCTCAGACTTGTTTAAGGTAGAACTGGACTGGATGTTAACAGTGTT
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2938465 117 -  42888418 TTAGTTCCAACTTTCTTTCCTTTTTTTT-ACTTTAGTCTTGAAAAATAATAAGTATGCATTAGGTCTGTATTTCTCAGACTTGTTTAAGGTAGAACTGGACTGGATGTTAACAGTGTT
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=556306.000000
s hg38.chr15_KI270850v1_alt    147458 152 +    430880 AGTTCAG--CAGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACACTTTAAAGGTGCCACCATTTGCAGAAGAAAGCAGTGATTTAAAGCAGCTATACTAGCACAGTTTAGAATACTTACACTAGCTGATGGAGTAGATACATTCTAG
s panTro5.chr15              66057143 154 +  83230942 AGTTCAGTACAGAGACATGAGCAAATCACTCACTTCCTCTTCAAGATAACACTTTAAAGGTGACACCATTTACAGAAGAAGGCAGTGATTTAAATCAGTTATACTAGCATAGTTTAGAATACTTACACTACCAGATGGAGTAGATACATTCTAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83293297 154 +  99763055 AGTTCAGTACAGAGACATGAGCAAATCACTCACTTCCTCTTCAAGATAACACTTTAAAGGTGACACCATTTACAGAAGAAGGCAGTGATTTAAATCAGTTATACTAGCATAGTTTAGAATACTTACACTACCAGATGGAGTAGATACATTCTAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       159368 154 +    378907 AGTTCAGTACAGAGACATGAGCAAATCACTCACTTCCTCTTCAAGATAACACTTTAAAGGTGACACCATTTACAGAAGAAGGCAGTGATTTAAATCAGTTATACTAGCATAGTTTAGAATACTTACACTACCAGATGGAGTAGATACATTCTAG
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106471956 154 - 171882078 GGTTCAGTACAGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACACTTTAAACCTGCCACCATTTACAGAAGAAAACAGTGATTTAAAGCAGCTATACCAGCACAGTTTAGAATACTTACAGTACCCTATGGAGTAGATACATTCTAG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4013381 154 +  24206276 AGTTCAGTACAGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACACTTTAAAGGTACCACCATTTACAGAAGAAAGCTGTGATTTAAATCAGTTATATTAGCAAAGCTTAGAATACTTATAGTACCAGATGGAATAGATACATTCTAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1070149 154 +   1458659 GGTTCAGTACAGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACACTTTAAACCTGCCACCATTTACAGAAGAAAACAGTGATTTAAAGCAGCTATACCAGCACAGTTTAGAATACTTACAGTACCTGATGGAGTAGATACATTCTAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       275895 154 +   4111199 GGTTCAGTACAGAGACATGAGCAAATCACTCACTTCCCCTTCAAGATAACACTTTAAAGGTGCCACCATTTACAGAAGAAAGCAGTGATTTAAAGCGGCTATACCAGCACAGTTTAGAATACTTACAGTACCCGATGGAGTAGATACATTCTAG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113950424 154 - 132174527 AGTTCAGTACATAGACATGAGCGAGTCACTTCTTTCCCTTTCAAGATAACACTTTAAAGGTGCCACCGTTTACAGAAAAAAGCAGCGATTTAAATCAGTTATACTAGTACAGTTTAGAATACTTACAGTACGAGATGGAGTAGATACATTCTAG
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2938582 154 -  42888418 AGTTCAGTACAGAGACATGAGCAAGTCACTCCCTTCCCTTTCAAGATAACAGTGTAAAGGTGCCACCGTTTACAGAAAAGAGCAGTGATTTAAATCAGTTATACTAGCACAGTTTAGAATACTTACAGTACCATCTGGAGTAGATATATTCTAG
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=123619.000000
s hg38.chr15_KI270850v1_alt    147610 248 +    430880 AAATATTTACCTGTagtgggagttgaacagtgagaacacatggacacagggagtggggaacatcacacactggggcctgttgggggttggggggctaggggagggatagcattaggagaaatacctagtgtagatgacgagttgatgggtgcagcaaaccaccatggcacgtgtgtacctatgcaacaaacctgcacgttctgcacatataccccagaacttaaagtataataat-aagaaagaaaAAT
s macFas5.chr7              106472110 245 - 171882078 AAATATTTACCTGTagtgggagttgaacagtgagaacacatgg--acacaga--ggggaacatcacacactggggcctgttgcggggtgtggggctaggggcgggatagcattaggagaaatacctagtgtagatgacaagttgatgggtgcagcaaaccactgtggcacgtgtgtacctatgcaacaaacctgcacgttctgcacatgtacgccagaacttaaagtataataataaaaaaagaaAAAT
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1      1070303 247 +   1458659 AAATATTTACCTGTagtgggagttgaacaatgagaacacatggacacacaga--ggggaacatcacacactggggcctgttgtggggtgtggggctaggggcgggatagcattaggagaaatacctagtgtagatgacaagttgatgggtgcagcaaaccactgtggcacgtgtgtacctatgcaacaaacctgcacgttctgcacatgtacgccagaacttaaagtataataataaaaaaagaaAAAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       276049 246 +   4111199 AAATATTTACCTGTagtgggagttgaacaatgagaacacatggacacacaga--ggggaacatcacacactggggcctgttgggggttggggggctaggggagggatagcattaggagaaatacctaatgtagatgacaagttgatgggtgcagcaaaccaccgtggcgcgtgtgtacctatgcaacaaacctgcacattttgcacatgtatg-tagaacttaaagtgtaacaataaaaaaagaaAAAT
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018505940v1      2938736   0 -  42888418 C
e calJac3.chr10             113950578   0 - 132174527 C
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e panPan2.chr15              83293451   0 +  99763055 C
e chlSab2.chr29               4013535   0 +  24206276 C
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I
e gorGor5.CYUI01015946v1       159522   0 +    378907 C
e panTro5.chr15              66057297   0 +  83230942 C

a score=306280.000000
s hg38.chr15_KI270850v1_alt    147858 85 +    430880 AAATATTTACCTGTTAAGGACA-TTTCTGTGTATTTTATTCCATCTTTCCAATAGTTTTCTTATGAAGAGATTATAGTTAACCTTT
s panTro5.chr15              66057297 85 +  83230942 AAATACTTACCTGTTAAGGACA-TTTCTTTAGATTTTATTCCATCTTTCCATTAGTTTTCTGATGAAGAGATTATAGTAAACCTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83293451 85 +  99763055 AAATATTTACCTGTTAAGGACA-TTTCTTTAGATTTTATTCCATCTTTCCATTAGTTTTCTGATGAAGAGATTATAGTAAACCTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       159522 85 +    378907 AAATATTTACCTGTTAAGGACA-TTTCTTTAGATTTTATTCCATCTTTCCATTAGTTTTCTGATGAAGAGATTATAGTAAACCTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106472355 86 - 171882078 AAATATTTACCTGTTAAGGACATTTTCTGTATATTTTATTCCATCTTTCCAATAGTTTTCTTATGAAGAGATTATAGTAAACCTTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4013535 85 +  24206276 AAATATTTACCTGTTAAGGACA-TTTCTATAGATTTTATTCCATTTTTCCATTAGTTTTCTGATGAAGAGATTGTAGTAAACCTTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1070550 86 +   1458659 AAATATTTACCTGTTAAGGACATTTTCTGTATATTTTATTCCATCTTTCCAATAGTTTTCTTATGAAGAGATTATAGTAAACCTTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       276295 86 +   4111199 AAATATTTACCTGTTAAGGACATTTTCTGTATATTTTATTCCATCTTTCCAATAGTTTTCTTATGAAGAGATTATAGTAAACCTTT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113950578 85 - 132174527 AAATACTTATCTGTTAAGGACA-TTTCTATATATTTTATTTCATCTGTTCATTAGTTTTTGTATGAAGAGATTATAGTGAACCTTT
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2938736 85 -  42888418 AAATATTTACCTGTTAAGGACA-TTTCTGTATATTTTATTCCGTCTTTCCATTAGTTTTTGTATGAAGAGATTATAGTGAACCTTT
i aotNan1.NW_018505940v1    C 0 I 111
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=-7550.000000
s hg38.chr15_KI270850v1_alt    147943  4 +    430880 GAA-----------------C
s panTro5.chr15              66057382 21 +  83230942 AAAAATTATATTTGATCAAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83293536 21 +  99763055 AAAAATTATATTTGATCAAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       159607 21 +    378907 AAAAATTATATTTGGTCAAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106472441  4 - 171882078 AAAC-----------------
i macFas5.chr7              C 0 I 1
s chlSab2.chr29               4013620  4 +  24206276 AAAA-----------------
i chlSab2.chr29             C 0 I 1
s manLeu1.NW_012105520v1      1070636  4 +   1458659 AAAC-----------------
i manLeu1.NW_012105520v1    C 0 I 1
s colAng1.NW_012116021v1       276381  4 +   4111199 AAAC-----------------
i colAng1.NW_012116021v1    C 0 I 347
s calJac3.chr10             113950663  4 - 132174527 AAAA-----------------
i calJac3.chr10             C 0 I 1
e aotNan1.NW_018505940v1      2938821 111 -  42888418 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=-3996.000000
s hg38.chr15_KI270850v1_alt    147947 2 +    430880 -TT
s panTro5.chr15              66057403 2 +  83230942 -TT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83293557 2 +  99763055 -TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       159628 2 +    378907 -TT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106472446 1 - 171882078 -T-
i macFas5.chr7              I 1 I 17
s chlSab2.chr29               4013625 1 +  24206276 -T-
i chlSab2.chr29             I 1 I 17
s manLeu1.NW_012105520v1      1070641 1 +   1458659 -T-
i manLeu1.NW_012105520v1    I 1 I 26
s calJac3.chr10             113950668 2 - 132174527 TT-
i calJac3.chr10             I 1 C 0
e aotNan1.NW_018505940v1      2938821 111 -  42888418 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e colAng1.NW_012116021v1       276385 347 +   4111199 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=12240.000000
s hg38.chr15_KI270850v1_alt    147949 10 +    430880 ------------AACAGATTGA
s panTro5.chr15              66057405  9 +  83230942 ------------A-CAGATTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83293559  9 +  99763055 ------------A-CAGATTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       159630  9 +    378907 ------------A-CAGATTGA
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106472464  9 - 171882078 ------------A-TAGATTGA
i macFas5.chr7              I 17 C 0
s chlSab2.chr29               4013643  9 +  24206276 ------------A-CAGATTGA
i chlSab2.chr29             I 17 C 0
s calJac3.chr10             113950670 21 - 132174527 ATATTTGATCACA-CAGATTGA
i calJac3.chr10             C 0 I 38
e aotNan1.NW_018505940v1      2938821 111 -  42888418 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e colAng1.NW_012116021v1       276385 347 +   4111199 I
e manLeu1.NW_012105520v1      1070642 26 +   1458659 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=26729.000000
s hg38.chr15_KI270850v1_alt    147959 14 +    430880 --GAGGGTAAACCTTT
s panTro5.chr15              66057414 12 +  83230942 --G--GATAAACCTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83293568 12 +  99763055 --G--GATAAACCTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       159639 11 +    378907 --G--GATAAACTTT-
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106472473 12 - 171882078 --G--GTTAAACCTTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4013652 12 +  24206276 --G--GGTAAACCTTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1070668 12 +   1458659 --G--GTTAAACCTTT
i manLeu1.NW_012105520v1    I 26 C 0
s calJac3.chr10             113950729 14 - 132174527 GAG--GGTAAACCTTT
i calJac3.chr10             I 38 C 0
s aotNan1.NW_018505940v1      2938932 14 -  42888418 GAG--GGTAAACCTTT
i aotNan1.NW_018505940v1    I 111 C 0
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e colAng1.NW_012116021v1       276385 347 +   4111199 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=222053.000000
s hg38.chr15_KI270850v1_alt    147973 64 +    430880 AAAAAATATATTTGGTCACACT--TACAGACTGAGGGTAAAAACATTCCTGACAAAGCTAGGCGAA
s panTro5.chr15              66057426 64 +  83230942 AAAAATTACAGTTGGTCACACT--TACAGATTGAGGGTAAAAACATTCCTGACAAAGCTAGGCGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83293580 64 +  99763055 AAAAATTACAGTTGGTCACACT--TACAGATTGAGGGTAAAAACATTCCTGACAAAGCTAGGCGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       159650 63 +    378907 -AAAATTACAGTTGGTCACACT--TACAGATTGAGGGTAAAAACATTCCTGACAAAGCTAGGCGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106472485 66 - 171882078 AAAAATTATATTTGGTGACACTTATACAGAGTTAGGGTAAAAACATTCCTGACAAAGCTAGGCAAA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4013664 64 +  24206276 AAAAATTATATTTGATCACACT--TACAGATTGAGGGTAAAAACATTCCTGACAAAGCTAGGCGAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1070680 64 +   1458659 AAAAATTATATTTGGTGACCCT--TACAGAGTGAGGGTAAAAACATTCCTGACCAAGCTAGGCAAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       276732 64 +   4111199 aaaaaTTATATTTGGTGACACT--TACAGAGTGAGGGTAAAAACATTCCTGACAAAGCTAGGCAAA
i colAng1.NW_012116021v1    I 347 C 0
s calJac3.chr10             113950743 64 - 132174527 AAATATTATATTTGATCACACT--TTGAGATTAAGGGTAAAGACATTCCTGACAAAGCTAGGCGAA
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      2938946 64 -  42888418 AAATATTATATTTGATCACCCT--TTGAGATTGAGGGTAAAAACATTCCTGACAAAGCTAGGCGAA
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=14019.000000
s hg38.chr15_KI270850v1_alt    148037 34 +    430880 GACACTTGGAC---------tttttttttt------ttttgagacggag
s macFas5.chr7              106472551 43 - 171882078 GAGACTTGGAAtttgtttttgttttttttt------ttttgagaaggaa
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1      1070744 33 +   1458659 GAGACTTGGAA----------ttttttttt------ttttgagaaggaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       276796 39 +   4111199 GAGAGTTGGAC----TGtttctttttttct------ttttgagaaggaa
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113950807 40 - 132174527 GAAACTTGGAC---------TTTTGATGTTCCACACTTTTGAGATTGAG
i calJac3.chr10             C 0 I 31
e aotNan1.NW_018505940v1      2939010  0 -  42888418 C
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e panPan2.chr15              83293644  0 +  99763055 C
e chlSab2.chr29               4013728  0 +  24206276 C
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I
e gorGor5.CYUI01015946v1       159713  0 +    378907 C
e panTro5.chr15              66057490  0 +  83230942 C

a score=132957.000000
s hg38.chr15_KI270850v1_alt    148071 267 +    430880 tctcgctctgtcacccaggctggagtgcagtagcacgatcttggctcactgcaacctctgcttccccggttgaagcgaatcttctgcctctcccgagtagctgggactacaggcacacgccaccatgcctgactaatttttgtatttttagtagagacggggtttcaccatattgaccaggctggtcttgaactcctgacctcgtgatccacccacctcagcctcctaaagtgctgggattacaggcatgagccactgcacccggcT
s macFas5.chr7              106472594 267 - 171882078 tctcactctgtcacccaggctggagtgcagtggtgcgatcttggttcactgcaacctctgcctcccgggttcaagcgaatcttctgcctctgccgagtagctgggactataggcacgcaccaccatgtcttgctaacttttgtatttttagtagagctggggtttcaccatattggccaggatggtcttgaactcctgacctcgtgatccccccgccttggcctccgaaagtgctgggattacaggcatgagccaccgcgcctgTCT
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1      1070777 267 +   1458659 tctcactctgtcacccaggctggagtgcagtggtgcgatcttggttcactgcaacttctgcctcccgggttcaagcgaatcttctgcctctgccgagtagctgggactacaggcacacaccaccgtgtcttgctaacttttgtatttttagtagacctggggtttcaccatattggccaggatggtctcgaactcctgacctcgtgatccccccgccttggcctccgaaagtgctgggattacaggcatgagccaccgtgcctgTCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       276835 266 +   4111199 tctcactctgtcacccaggctggagtgcagtggtgtgatcttggctcactgcaacctccacctcccaggttcaagcgaatcttctgcctct-ccgagtagctgggactacaggcatgcaccaccatgtcttgctaacttttgtatttttagtagagatggggtttcaccatattggccaggatggtctcgaactcctgacctcgtgatccacccgcctcggcctccgaaagtgctgggattacaggtgtgagccaccacgcctgTCT
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018505940v1      2939010   0 -  42888418 C
e calJac3.chr10             113950847  31 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e panPan2.chr15              83293644   0 +  99763055 C
e chlSab2.chr29               4013728   0 +  24206276 C
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I
e gorGor5.CYUI01015946v1       159713   0 +    378907 C
e panTro5.chr15              66057490   0 +  83230942 C

a score=1702471.000000
s hg38.chr15_KI270850v1_alt    148338 483 +    430880 GAAACTTGGACTTTTGATGTTTCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGATGGGGACAGGCATCCATTTGGAAGTAGCTTCCCTCTC--TCTC------TCTTTCCCAGGTTAGGCTGTCTTATTGCTGTAAATGGGGAGAGAAGAGAAAGCCGTGGGTGGAAGAAAG--TGTTTCATggcctggtgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggtggatcacttgagttcaggagttcaagaccagcctggccaacatggtgaaaccccgtttctactaaaaacagaaaaattagctgggcatggtggcgggcacctgtaatcccagctacttgggaggctgaggcaggagaatcactt-gaacccaggagatggaggttgcagtgagccgagattgcaccacttcactccagcctggtcgacagagcgagaccttgtctcaaaaaaaaaa
s panTro5.chr15              66057490 481 +  83230942 GAAAGTTGGACTTTTGATATTCCCTTCTTTTAAAGTTAACATCTGGCACTTGAATAGACTTGGTTATTACTGATGGGGACAGGCATCCATTTGGAAGTAGCTTCC----G--TCTC------TCTTTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAGGAGAAAGCCGTGGGTGGAAGAAAGTTTGTTTCATAgcctggcgcagtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaactagcctggcagggtggcaggtgcctgtaatcccagctacttgggaggctgaggcaggagaatcgctt-gaacccgggaggtggaggttgcaatgagccgagatcatgccactgcgctccagtctgggcgacagagcgagactccgtctcaaaaaaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83293644 481 +  99763055 GAAAGTTGGACTTTTGATATTCCCTTCTTTTAAAGTTAACATCTGGCACTTGAATAGACTTGGTTATTACTGATGGGGACAGGCATCCATTTGGAAGTAGCTTCC----G--TCTC------TCTTTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAGGAGAAAGCCGTGGGTGGAAGAAAGTTTGTTTCATAgcctggcgcagtggcttatgcctgtaatcccagcactttgggaggctgaggcgggcggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaactagcctggcagggtggcaggtgcgtgtaatcccagctacttgggaggctgaggcaggagaatcgctt-gaacccgggaggtggaggttgcaatgagccgagatcatgccactgcgctccagtctgggcgacagagcgagactctgtctcaaaaaaaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       159713 481 +    378907 GAAAGTTGGACTTTTGATGTTCCCTTCTTTTAAAGTTAACATCTGGCGCTTGAATAGACTTGGTTATTACTGATGGGGACAGGCATCCTTTTGGAAGTAGCTTCC----C--TCTC------TCTTTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAGGAGAAAGCCGTGGGTGGAAGAAAGTTTGTTTCATAgcctggcgcagtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaactagcccggcagggtggcaggtgcctgtaatcccagctacttgagaggctgaggcaggagaatcgctt-gaaccctggaggtggaggttgcaatgagctgagatcatgccactgcgctccagtctgggcgacagagcgagactccatctcaaaaaaaaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106472861 487 - 171882078 GAAACTTGGACTTTTGATGTTCCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGATGGGGACAGACATCCATTTGGAAGTAGCTTTC----C--TCTCTCTCTGTCTTTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAAGAGAAAGCTGTGGGTGGAAGAAAGTTTGTTTCATAgcctggcgtggtggctgatgcctgtaatcccagcactttgggaggccgaggtgggtgggtcacttgagttcaggagttcaagaccagcctggccaacatggcgaaaccccgtctctactaaaaatagaaaaattagctgggcatggtggcggtcacctgtaatctcagctgcttgggaggctgaggcaggagaattactt-gaacccggtcagtggaggttgcagtgagctgagattgcaccacttttcttcagcctggtggacagagcaagacctcgtctcaaaaaagaag
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4013728 487 +  24206276 GAAACTTGGACTTTTGATGTTCCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGATGGGGACAGGCGTCCATTTGGAAGTAGCTTCC----C--TCTCTCTCTGTCTTTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAGGAGAAAGCTGTGGGTGGAAGAAAGTTTGTTTCATAgcctggcgcagtggctgatgcctgtaatcccagcactttgggaggccgaggcgggcagatcagttgaggtcaggagatcaagaccagcctggccatcatggtgaaaccccatctctactaaaaatacagaaactaccccagcagggtggcggatgcctttaatcccagctacttgggaggctgaggcaggagaatcactt-gaacccgggaggtggaggttgcagtgagccgagatcatgccactgcactccagcctgggcaacagagtgagactccatctcaaaaaaaaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1071044 487 +   1458659 GAAACTTGGACTTTTGATGTTTCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGATGGGGACAGACATCCATTTGGAAGTAGCTTCC----C--TCTCTCTCTGTCTTTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAGGAGAAAGCTGTGGGTGGAAGAAAGTTTGTTTCATAgcctggcacagtggctgatgcttgtaatcccagcattttgggaggctgaggtgggtggatcacttgagtccagaagttcaagaccagcctggccaacatggcgaaaccccgtctctactaaaaatagaaaaattagccgggcatgatggcggtcacctgtaatctcagctacttgggaggctgaggcaggagaattgctt-gaacccggtcagtggaggttgcagtgagctgagattgcaccacttcacttcagcctggtggacagagcaagacctcatctcaaaaaagaac
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       277101 489 +   4111199 GAAACTTGGACTTTTGATGTTCCCTTCTTTTAAAGTTAACATCTAGCACTTGAATAGACTTGGCTATTACTGATGGGGACAGGCGTCCATTTGAAAGTAGCTTCC----CTGTCTCTCTCTGTCTTTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAAGAGAAAGCTGTGTGTGGAAGAAAGTTTGTTTCATggcctggcacggtgggtcatgcctgtaatcccagcattttgggaggctgaggtgagtggatcacttgagttcagacgttgaagaccagcctggccaacatggcgaaaccccgtctctactaaaaatagaaaaattagctgggcatggtggcgggcacctgtaatctcagctacttgggaggctgaggcaggagaattgctt-gaacccagtcgatggaggttgcagtgagctgagattacaccacttcacttcagcctggtcaacagagcaagacctcgtctcaaaaaagaag
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             113950878 487 - 132174527 GAAACTTGGACTTTTGATGTTCCCTTCATTTAACGTTAACATCTAGCACTTGAATAGACTTGGTTATTACTGAGGGGGACAGGCGTCCATTTGGAAGTAGCTTCC----C--TCTCTCACTCTCTCTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGAGAGGAGAAAGCTGTTGGTGGAAGAAAGTTTGTTTCATggcctggctcagtggctcacgcctgtaattgcagcattttgggaggccgaggtcagcggatcacttgaggtcaggaattcaagacccgcctgggcaacatggcgaaaccctgtctctactgaaaatacaaaaattagccaggcgttgtggcagacg-gtgtaatcctggctactggggaggctgaggcaggaaaatcgcttccaacttgggaggtgaaggttgcagtgagccgagatcacgccactgcactccagcctatgtgacagagtgtgactctatttcaaaaaaGGAA
i calJac3.chr10             I 31 I 97551
s aotNan1.NW_018505940v1      2939010 485 -  42888418 GAAACTTGGACTCTTGATGTTCCCTTCATTTAAAGTTAACATCTAGCACTTGAATAGACTTGGTTATTATTGATGAGGACAAGCATCCATTTGGAAGTAGCTTCC----C--TCTCTCACTCTGTTTCCCAGGTTAGGCTGTCTTACTGCTGTAAATGGGGAGACAGGAGAAAGCTGTTGGTGGAAGAAAGTTTGTTTCATggcctggctcagtggctcacgcctgtaatcgcagcattttgggaggccgaggtgggt-gatcacttgaggtcaggagttcaagaccagcctggtcaacatggcgaaaccctgtctctactgaaaatacaaaaattagccaggcgttatgtcaggtg-gtgtaatcctggctactcgggaggctgaggcaggaaaatcactt-caacttgggaggtgaaggttgcagtgagctgagatcacgccactgcactccagcctatgtgacagagtgtgactctgtctcaaaaaaaaaa
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=9828.000000
s hg38.chr15_KI270850v1_alt    148821 3 +    430880 aaa
s panTro5.chr15              66057971 3 +  83230942 aaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83294125 3 +  99763055 aaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       160194 3 +    378907 aaa
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106473348 3 - 171882078 aaa
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4014215 3 +  24206276 aaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1071531 3 +   1458659 aaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       277590 3 +   4111199 aaa
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      2939495 3 -  42888418 aaa
i aotNan1.NW_018505940v1    C 0 I 88522
e calJac3.chr10             113951365 97551 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=8389.000000
s hg38.chr15_KI270850v1_alt    148824 4 +    430880 aaaa
s panTro5.chr15              66057974 4 +  83230942 aaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83294128 4 +  99763055 aaaa
i panPan2.chr15             C 0 I 88696
s gorGor5.CYUI01015946v1       160197 4 +    378907 aaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106473351 4 - 171882078 gaaa
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4014218 4 +  24206276 aaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1071534 4 +   1458659 gaaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       277593 4 +   4111199 gaaa
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018505940v1      2939498 88522 -  42888418 I
e calJac3.chr10             113951365 97551 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=474.000000
s hg38.chr15_KI270850v1_alt    148828 1 +    430880 a
s panTro5.chr15              66057978 1 +  83230942 a
i panTro5.chr15             C 0 I 90978
s gorGor5.CYUI01015946v1       160201 1 +    378907 a
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106473355 1 - 171882078 g
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4014222 1 +  24206276 a
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1071538 1 +   1458659 g
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       277597 1 +   4111199 g
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018505940v1      2939498 88522 -  42888418 I
e calJac3.chr10             113951365 97551 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e panPan2.chr15              83294132 88696 +  99763055 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=-429.000000
s hg38.chr15_KI270850v1_alt    148829 5 +    430880 aaaaa--
s gorGor5.CYUI01015946v1       160202 5 +    378907 aaaaa--
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106473356 3 - 171882078 --ata--
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4014223 5 +  24206276 --aaaaa
i chlSab2.chr29             C 0 I 87700
s manLeu1.NW_012105520v1      1071539 3 +   1458659 --ata--
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       277598 3 +   4111199 --ata--
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018505940v1      2939498 88522 -  42888418 I
e calJac3.chr10             113951365 97551 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e panPan2.chr15              83294132 88696 +  99763055 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I
e panTro5.chr15              66057979 90978 +  83230942 I

a score=-1369.000000
s hg38.chr15_KI270850v1_alt    148834 2 +    430880 -gt
s gorGor5.CYUI01015946v1       160207 2 +    378907 -GT
i gorGor5.CYUI01015946v1    C 0 I 89030
s macFas5.chr7              106473359 2 - 171882078 gg-
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1      1071542 2 +   1458659 gg-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       277601 2 +   4111199 gg-
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018505940v1      2939498 88522 -  42888418 I
e calJac3.chr10             113951365 97551 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e panPan2.chr15              83294132 88696 +  99763055 I
e chlSab2.chr29               4014228 87700 +  24206276 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I
e panTro5.chr15              66057979 90978 +  83230942 I

a score=341925.000000
s hg38.chr15_KI270850v1_alt    148836 670 +    430880 gtcccactcagttgcccaggctgaaacgcagtggcaggatcactgctcactgcagccttgaaccaagcgattatcccacctcagcctcccaagtagctgggatcacatgcatgcaccgccatgcctggctaatttttttatttttgtagagacagggtctctctgtgttgcccagcctggtctcaaactccctggatgaagcaatcctcccaccatggtctcccaaagtgtagggcttacaggcgtgagagccaccatgcccagcctgctggggtttttgattgacattgcattgaagctggaaatcagttaggaggcaactgacattttaataatgagccatgaacatggtatatctatgtatttagacc---ttagatttttcgtcagtgttttgtagtttttagcaattggatcttgcttgcattttgtaatcttacacatttatttcatgt-ttgtggtactgttgtgaatgatacttctcaatttccagttggtgattgctagtatataggaagatgattttatgttatatgctgaccttggattctacaaccttgctaaactcatttttagtactagaagcttttttgtagatttttggaattttgtgcatagacagcaatgtcactggcaaa--taagggcagtttaatttctttgttttcactttgta
s macFas5.chr7              106473361 670 - 171882078 gtcccactcagttgcccaggctgaaacgcagtggcaggatcactgctcactgcagccttgacccaagtgattatcccacctcagcctcccaagtaactgggctcacatgcatgcaccaccatgcctggctaatttttttgtttttgtagagagaggatctctctatgttgcccaggctgctcttaaactccttggatgaagtgatcctctcaccgtgaactcccaaagtgtagggcttacaggtgt--gagccaccatgctcagcctgctggggtttttgattggcattgcattgaagctggaaatc----aggaggcaattgacgttttaataacgagccatgagcatggtatatctatttatttagacctttttagatttttcatcagtattttgtagtttttagcaattggatcttgcatgtattttgtaatcttatatatttatttcatgggttgtgatgctgttgtgaatgatacttttcaatttccagttggtcgttgctaggctataggaagatgattttatgttacatgctgaccttggattctacaaccttgctaaactcatttttagtgctagaagcttttttgtaaatttttggaattttgtgcatggacagtaatgtcactgccaaatttaagggcagtttaatttcttcattttcactttgta
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1      1071544 670 +   1458659 gtcccactcagttgcccaggctgaaacgcagtggcaggatcactgctcactgcagccttgacccaagtgattatcccacctcagcctcccaagtaactgggctcacatgcatgcaccaccatgcctggctaatttttttgtttttgtagagagaggatctctctatgttgcccaggctggtcttaaactccttggatgaagtgatcctctcaccgtgaactcccaaagtgtagggcttacaggtgt--gagccaccatgctcagccTTCTGgggtttttgattggcgtcgcattgaagctggaaatc----aggaggcaattgacgttttaataacgagccatgagcatagtatatctatttatttagaccttcttagatttttcatcagtattttgtagtttttagcaattggatcttgcatgtattttgtaatcttatatatttatttcatgggttgtgatgctgttgtgaatgatacttttcaatttccagttggtcgttgctaggctataggaagatgattttatgttacatgctgaccttggattctacaaccttgctaaactcatttttagtactagaagcctttttgtagatttttggaattttgtgcatggacagtaatgtcactgccaaatttaagggcagtttaatttcttcattttcactttgta
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       277603 668 +   4111199 gtcccactcagttgcccaggctgaaacgcagtggcaggatcactgctcactgcagccttgacccaagtgattatcccacctcagcctcccaagtaactgggctcacatgcatgcaccaccatgcctggctaatttttttgtttttgtagagagaggatctctctatgttgcccaggctggtctcaaactcctgggatgaagtgatcctctcaccgtgaactcccaaagtgtagggcttacaggtgt--gagccaccatgctcagcctgctggggtttttgattggcgttgcattgaagctggaaatc----aggaggcaattaacattttaataacgagccatggccatggtgtatctatttatttagaccttcttagatttttcatcagtgttttgtagtttttagcaattggatcttgcatgtattttgtaatcttatatatttatttcatgtgttgtggtgctgttgcgaatgatacttttcgatttccagttggtcattgctaggatataggaagatgattttatgttacatgctgaccttggattctacaaccttgctaaactcatttttagtactagaagcttttctgtagatttttggaattttgtgcatagacagtaatgtcactgccaaa--taagggcagtttaatttcttcattttcactttgta
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018505940v1      2939498 88522 -  42888418 I
e calJac3.chr10             113951365 97551 - 132174527 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e panPan2.chr15              83294132 88696 +  99763055 I
e chlSab2.chr29               4014228 87700 +  24206276 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e nomLeu3.chr6              101773322 7475 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I
e gorGor5.CYUI01015946v1       160209 89030 +    378907 I
e panTro5.chr15              66057979 90978 +  83230942 I

a score=9131.000000
s hg38.chr15_KI270850v1_alt    149506 13 +    430880 tacttttatttcc
s nomLeu3.chr6              101780797 13 + 121039945 tgCtttttttttt
i nomLeu3.chr6              I 7475 C 0
s macFas5.chr7              106474031 13 - 171882078 tacttttattttc
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1      1072214 13 +   1458659 tacttttAttttc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       278271 13 +   4111199 tacttttcttttc
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018505940v1      2939498 88522 -  42888418 I
e calJac3.chr10             113951365 97551 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e panPan2.chr15              83294132 88696 +  99763055 I
e chlSab2.chr29               4014228 87700 +  24206276 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307  0 +   3282555 I
e gorGor5.CYUI01015946v1       160209 89030 +    378907 I
e panTro5.chr15              66057979 90978 +  83230942 I

a score=6433.000000
s hg38.chr15_KI270850v1_alt    149519 4 +    430880 tttt
s gorGor5.CYUI01015946v1       249239 4 +    378907 tttt
i gorGor5.CYUI01015946v1    I 89030 C 0
s nomLeu3.chr6              101780810 4 + 121039945 tttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106474044 4 - 171882078 tttc
i macFas5.chr7              C 0 I 4
s manLeu1.NW_012105520v1      1072227 4 +   1458659 tttc
i manLeu1.NW_012105520v1    C 0 I 9
s colAng1.NW_012116021v1       278284 4 +   4111199 tttt
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      3028020 4 -  42888418 tttt
i aotNan1.NW_018505940v1    I 88522 C 0
e calJac3.chr10             113951365 97551 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e panPan2.chr15              83294132 88696 +  99763055 I
e chlSab2.chr29               4014228 87700 +  24206276 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307 0 +   3282555 I
e panTro5.chr15              66057979 90978 +  83230942 I

a score=627.000000
s hg38.chr15_KI270850v1_alt    149523 1 +    430880 t
s panTro5.chr15              66148957 1 +  83230942 t
i panTro5.chr15             I 90978 C 0
s panPan2.chr15              83382828 1 +  99763055 t
i panPan2.chr15             I 88696 C 0
s gorGor5.CYUI01015946v1       249243 1 +    378907 a
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106474052 1 - 171882078 t
i macFas5.chr7              I 4 C 0
s manLeu1.NW_012105520v1      1072240 1 +   1458659 t
i manLeu1.NW_012105520v1    I 9 C 0
s aotNan1.NW_018505940v1      3028024 1 -  42888418 t
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10             113951365 97551 - 132174527 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e colAng1.NW_012116021v1       278288 0 +   4111199 C
e chlSab2.chr29               4014228 87700 +  24206276 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e nomLeu3.chr6              101780814 0 + 121039945 C
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=38120.000000
s hg38.chr15_KI270850v1_alt    149524 15 +    430880 tttttttttgagacg
s panTro5.chr15              66148958 15 +  83230942 ttttttcttgagaca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83382829 15 +  99763055 ttttttcttgagaca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       249244 15 +    378907 tttttttttgagaca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101780814 11 + 121039945 tttttttttaa----
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106474053 15 - 171882078 tttttttctgagacg
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1      1072241 15 +   1458659 tttttttctgagacg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       278288 12 +   4111199 ---ttttctgagacg
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114048916 15 - 132174527 ttttttttggagatg
i calJac3.chr10             I 97551 C 0
s aotNan1.NW_018505940v1      3028025 15 -  42888418 tttttcttggagacg
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e chlSab2.chr29               4014228 87700 +  24206276 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=620897.000000
s hg38.chr15_KI270850v1_alt    149539 156 +    430880 gagtttctctcttgttgcccaggctggagtgcaatggcgtgatctaggctcgctgcaacctctgcctcctgggttcaagcgattctcgtgcttcaccctccccagtagttggcattacaggcgcccgccaccacgcctggctaa-tttttgtatttt-
s panTro5.chr15              66148973 156 +  83230942 gagtttctctcttgttgcccaggctggagtgcaatggcgcaatctgggctcactgcaacctccacctcccaggttcaaacgattctcatgcctcagcctccccagaaactgggattacaggtgcccgccaccacactcggctaa-tttttgtatttt-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83382844 156 +  99763055 gagtttctctcttgttgcccaggctggagtgcaatggcgcaatctgggctcactgcaacctccacctcccaggttcaaacgattctcatgcctcagcctccccagaaactgggattacaggtgcccgccaccacactcggctaa-tttttgtatttt-
i panPan2.chr15             C 0 I 18
s gorGor5.CYUI01015946v1       249259 156 +    378907 gagtttctctcttgttgcccaggctggagtgcaatggcgcaatctgggctcactgcaacctccacctcccaggttcaaacgattctcatgcctcagcctccccagaaactgtgattacaggtgcccgccaccacacccggctaa-tttttgtatttt-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101780825 156 + 121039945 tggtttctctcttgttgcccaggctggagtgcaatggcgtgatctcggctcactgcaacctctgcctcctgggttcaagcagtcctcatgcttcagccttcccagtagctgggattacaggcgcctgccaccatgcctggctaa-tttttgtatttt-
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106474068 156 - 171882078 cagtttctctcttgttgcccaggctggaatgcaatggtgtgatctcatctcactgcaacctctgcctcctgggttcaagtgattctcgtgcttcagcctccccattagctgggattacaggcgcctgctaccacgcctggctaa-tttttgtatttt-
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4101928 156 +  24206276 gagtttctctcttgttgcccaggctggagtgcaatggtgccatctgggctcactgcaacctctgcctcccaggttcaaatgattctcatgcttcagcctccccagtaactgggattacaggtgcctgccaccacactcggctaa-tttttgtatttt-
i chlSab2.chr29             I 87700 C 0
s manLeu1.NW_012105520v1      1072256 156 +   1458659 cagtttctctcttgttgcccaggctggagtgcaatggcgtgatctcatctcactgcaacctctgcctcctgggttcaagtgattctcgtgcttcagcctccccattagctgggattacaggtgcctgctaccacgcctggctaa-tttttgtatttt-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       278300 156 +   4111199 cagtttctctcttgttgcccaggctggagtgcaatggtgcgatctcgtctcactgcaacctctgcctcctgggttcaagtgattctcatgcttcagcctccccattagctgggattacaggcgcctgctaccacgcctggctaa-tttttgtatttt-
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114048931 157 - 132174527 gagtctcact-ttgccacccagactggagtgcagtggcatgatcttggctcactgcaacctccgcctcctgggttcttggaattctcctgcctcagcctcctgagtagctgggactacaggtgcatgccgccacgcctggctaattttttgtagtttt
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      3028040 157 -  42888418 gagtctcact-ttgccacccagactggagtgcagtggcatgatctcggctcactgcaacctccgcctcctgggttcttggagttctcctgcctcagcctcctgagtagctgggactacagtcgcatgcttccacgccctgctaattttttgtaggttt
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=3696.000000
s hg38.chr15_KI270850v1_alt    149695 2 +    430880 ta
s panTro5.chr15              66149129 2 +  83230942 tt
i panTro5.chr15             C 0 I 16
s gorGor5.CYUI01015946v1       249415 2 +    378907 tt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101780981 2 + 121039945 ta
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106474224 2 - 171882078 ta
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4102084 2 +  24206276 tt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1072412 2 +   1458659 ta
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       278456 2 +   4111199 ta
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114049088 2 - 132174527 ta
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      3028197 2 -  42888418 ta
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e panPan2.chr15              83383000 18 +  99763055 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=25209.000000
s hg38.chr15_KI270850v1_alt    149697 11 +    430880 gtagaaatagg
s gorGor5.CYUI01015946v1       249417 11 +    378907 gtagagacatg
i gorGor5.CYUI01015946v1    C 0 I 4
s nomLeu3.chr6              101780983 11 + 121039945 gtagaaatagg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106474226 11 - 171882078 gtagaaacagg
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4102086 11 +  24206276 atagagatggg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1072414 11 +   1458659 gtagaaacagg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       278458 11 +   4111199 gtagaaacagg
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114049090 11 - 132174527 gtagaggcgga
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      3028199 11 -  42888418 gtagaggcggg
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e panPan2.chr15              83383000 18 +  99763055 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307  0 +   3282555 I
e panTro5.chr15              66149131 16 +  83230942 I

a score=563861.000000
s hg38.chr15_KI270850v1_alt    149708 154 +    430880 gtttcaccatgttggccaggatggtctca-aactcctgacctcaggtgatctccctgc-------ctcggcctcccaaaatgctgggattataggtgtgagccaccgcttccggccTAAGAGGACACA--GTTTCTTTGGCTTATTAAGAGGTATTTGGTTAGT
s panTro5.chr15              66149147 156 +  83230942 gtttcaccatgttggccaggatggtctga-aactccttacctgaagttatcagcctgc-------cttggcctcccaaaattctgggattacaggcgtgtgccaccgcgtctgtccTAAGGGGACACACTGTTTCTCTGGCTTATTAAGAGGTATTTGGTTAGT
i panTro5.chr15             I 16 I 2
s panPan2.chr15              83383018 156 +  99763055 gtttcaccatgttggccaggatggtctga-aactccttacctgaagttatcagcctgc-------cttggcctcccaaaattctgggattacaggcgtgtgccaccgcgtctgtccTAAGGGGACACACTGTTTCTCTGGCTTATTAAGAGGTATTTGGTTAGT
i panPan2.chr15             I 18 I 2
s gorGor5.CYUI01015946v1       249432 156 +    378907 gtttcaccacgttggccaggatggtctga-aactccttacctgaagtgatcagcctgc-------cttggcctcccaaaattctgggattacaggcgtgtgtcactgcgtctgtccTAAGGGGACACACTGTTTCTCTGGCTTATTAAGAGGTATTTGGTTAGT
i gorGor5.CYUI01015946v1    I 4 I 2
s nomLeu3.chr6              101780994 162 + 121039945 gtttcaccatgttggccaggatggtctca-aactcctgacctcaggtgatctccccgcaggtgatttcggcctcccaaaatgctgggattataggtgtgagccaccacatccg-CCTAAGAGGACACACTGTTTCTTTGGCTTATTAAGAGGTATTTGGTTAGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106474237 155 - 171882078 gtttcaccatgttggccaggatggtctca-aactcctgacctcaggtgatctgcccgc-------ctcagcctcccaaaatgctgggattacaggcgtgagccaccgcttctggccCAAGAGGACACACTGTTTC-TTGGCTTATTAAGAGGTATTTGGTTAGT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4102097 155 +  24206276 gtttcaccatgttggccaggatggtctca-aactcctgactg-aggtgatgtacctgc-------cttggcctcccaaaattctgggattacaggtatgtgccacagcatccaaccTAAGGGGACACAGTGTTTCTTTGGCTTATTAAGGGGCATTTGGTTAGT
i chlSab2.chr29             C 0 I 2
s manLeu1.NW_012105520v1      1072425 145 +   1458659 gtttcaccgtgttggccaggatggtctca-aactcctgacc----------tgcccgc-------ctcagcctcccaaaatgctgggattacaggcgtgagccaatgcttctggccCAAGAGGACACACTGTTTC-TTGGCTTATTAAGAGGTATTTGGTTAGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       278469 155 +   4111199 gtttcaccatgttggccaggatggtctca-aactcctgacctcaggtgatctgcccgc-------ctcagcctcccaaaatgctgggattaccggcgtgagccactgcttctggccCAAGAGGACACACTGTTTC-TTGGCTTATTAAGAGATATTTGGTTAGT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114049101 141 - 132174527 gtttcactgtgttgcccaggctagtctcgaaactcctgagctcaggcaatctacccac-------cttggcctcctaaagtgctaggattacaggtgtgagccactgtgcccagcc----------------TTCTTTGGCTTATTAAGAGGTATTTGGTTAGT
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      3028210 140 -  42888418 gtttcaccgtgttgcccaggctggtctcg-aattcctgagctcaggcaatccacccgc-------cttggcctcctaaagtgctaggatttcaggtgtgagccaccgcggccagcc----------------TTCTTTGGCTTATTAAGAGGTATTTGGTTAGC
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=351111.000000
s hg38.chr15_KI270850v1_alt    149862 216 +    430880 GTTAGACcgggggttggtacattatagcttgctgactggatgtaccatgctgcctctttttataaatgaagttttattggaacacagccacacccattcatttacatattgtttaacagagaccatatgacctacagaccctaaaatattt-accactttgcgcttcgcaggcattttgctggctactgCTGTGGACACCAATTTTAATTTAGGTAG
s nomLeu3.chr6              101781156 216 + 121039945 GTTAGACcaggggttggtacattatagcttgttgactggatgtaacatgctgcctctttttataaataaagttttattggaacacagccacacccattcatttacatattgtttaacagagatcatagtacctacagagcctaaaacattt-accaatttgcgcttcacaggcactttgctgaccactgCTGTGGGCACCAATTTTAATTTAGGTAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106474392 211 - 171882078 GTTAGAGcaggggttggtacattatagcttgctgactggatttaacatgctgcctctttttataaataaatctttattggaacacagccacacccattcatttacatattgtttaacagagaccatatgacctgcagagcctaaaatattt-acccatttgcgcttcacaggcactttgctgaccactgCTGTGGACACCAAT-----TTTAGGTAT
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1      1072570 211 +   1458659 GTTAGACcaggggttggtacattatagcttgctgactggatttaacatgctgcctctttttataaataaatctttattggaacacagccacacccattcatttacatattgtttaacagagaccatatgacctgcagagcctaaaatattt-acccatttgcgcttcacaggcactttgctgaccactgCTGTGGACACCAAT-----TTTAGGTAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       278624 216 +   4111199 GTTAGACcaggggttggtacattatagcttgctgactggatttaacatgctgcctctttttataaataaatctttattggaacacagccacacccattcatgtacatgttgtttaacagagaccatatgacctgcagagcctaaaatattt-accaatttgcgctccacaggcactttgctgaccactgCTGTGGACGCCAATTTTAATTTAGGTAT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114049242 210 - 132174527 GTTAGACcagaggttggtatgttataccttgctgactggatgtaacttgctgc--ctttttata----aagttttgttggaacacagtcacacctactcatttacatgttgtttaacagagaccatatgaccttcagagcctaaaatactt-accagtttgcgcttctcaggcactttgctgaccactgCTGTGGACACCAGTTTTAATTTAGGTAT
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      3028350 213 -  42888418 GTTAGACcagaggttggtacgttataccttgctgactggatataacttgctgcctctttttata----cagttttattggaacacagtcacacctgctcatttacatattgtttaacagagaccatgtgaccttcagagcctaaaatacttaaccaatttgcgcttcacaggcactttgctgaccactgCTGTGGACACCAGTTTTAATTTAGGTAT
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e panPan2.chr15              83383174   2 +  99763055 I
e chlSab2.chr29               4102252   2 +  24206276 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307   0 +   3282555 I
e gorGor5.CYUI01015946v1       249588   2 +    378907 I
e panTro5.chr15              66149303   2 +  83230942 I

a score=1147167.000000
s hg38.chr15_KI270850v1_alt    150078 276 +    430880 ATAAACTTTTTTGTAGCTTCTGAGGTTTTGCATTAA-TTTGCTCAGGCA-TATAGGTTGGTGGAAGTGCTTTCTGTTCCTTCTCCCAAACCAATCACACAGCCATATAACTTCATGCCTGAGTTTCTGTGTGGTCCTCTATAGTGAGTGAGTTTTTACATACTTCTTTGCA-GCAGCATGAATTTCAAAAATCTCAACGCTTTTGCTCTTGCTAATCTTTGTAAACTTTGTACACCCAGTGCTGGTACATTCTGATGATAGTGCCCACACTGCACTCTA
s panTro5.chr15              66149305 276 +  83230942 ATAAACATTTTCGTAGCTTCTGAGGTTTTGCAGTCA-TTTGTTCAGACA-TATAGGTTGGTGGAAATGCTTTCTGTTCCTTTTCCCAAACCAATCACACAGCCATATAACTTCATGCCTGAGTTTCTCTGTGGTCCTCTATAGTGATTGAGTTTTTACATAGTTCTTTGCA-GCAGCATGAATTTCAAAAATCTCCAAACTTTTGCTATTGCTAATCTTTGTAAACTTTGCACACCCAGCGCTGGTACATTCTGATGATGGTGTCCACACTGCACTCTA
i panTro5.chr15             I 2 C 0
s panPan2.chr15              83383176 276 +  99763055 ATAAACATTTTCGTAGCTTCTGAGGTTTTGCAGTCA-TTTGTTCAGACA-TATGGGTTGGTGGAAATGCTTTCTGTTCCTTTTCCCAAACCAATCACACAGCCATATAACTTCATGCCTGAGTTTCTCTGTGGTCCTCTATAGTGATTGAGTTTTTACATAGTTCTTTGCA-GCAGCATGAATTTCAAAAATCTCCAAACTTTTGCTATTGCTAATCTTTGTAAACTTTGCACACCCAGCGCTGGTACATTCTGATGATGGTGTCCACACTGCACTCTA
i panPan2.chr15             I 2 C 0
s gorGor5.CYUI01015946v1       249590 276 +    378907 ATAAACATTTTCGTAGCTTCTGAGGTTTTGCAGTCA-TTTGTTCAGACA-TATGGGTTGGTGGAAATGCTTTCTGTTCCTTTTCCCAAACCAATCACACAGCCATATAACTTCATGCCTGAGTTTCTCTGTGGTCCTCTATAGTGAGTGAGTTTTTACATACTTCTTTGCA-GCAGCATGAATTTCAAAAATCTCCAAACTTCTGCTATTGATAATCTTTGTAAACTTTGCACACCCAGCGCTGGTACATTCTGATGATGGTGTCCACACTGCACTCTA
i gorGor5.CYUI01015946v1    I 2 C 0
s nomLeu3.chr6              101781372 276 + 121039945 ATAAACTTTTTTGTAGCTTCTGAGGTTTTGCATTTA-TTTGCTCAGGCA-TATAGGTTGGTGGAAGTGCTTTCTGTTCCTTCTCCCAAACCAATCACACAGCCATATAACTTCATGCCTGAGTTTCTGTGTGGTCCTCTATAGTGATTGAGTTTTTACATAGTTCTTTGCAGGCAGCATGAATTTCAAAAATCTCCAAA-TTTTGCTATTGCTAATCTTTGTAAACTTTGCACACCCAGCGCTGGTACATTCTGATGATGGTGTCCACACTGCACTCTA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106474603 273 - 171882078 ATAAACTGTTTTGTAGCTTCCAAGGTTTTGCAGTCA-TTTGCTCAGACA-TATGGGTTGGTGGAAGTGCTTTCTGTTCCTTCTCCC-AACCAATCACACAACCATGTAACTTCATGCCTGAGTTTCTGTGTGGTCCCCTATAGAGACTGAGTTTTTACATAGTTCTTTGCAGGCAGCATACATTTCAAAAATCTCCAAACTTTTGCTATTGCTAATCTTTGTGAACTTTGCATACCCAGCGCTGGTACATTC---TGATGGTGTCCACACTGCACTCTA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4102254 274 +  24206276 ATAAACATTTTCATAGCTTCTGAAGTTTTGCAGTCA-TTTGCTCAGACATTATGAGTTGGTGGAAATGCTTTCTGTTCCTTCTCCC-AACCAATCACACAACCATGTAACTTCATGCCTGAGTTTCTGTGTGGTCCTCTATAGTGATTGAGTTTTTACATAGTTCTTTGCAGGCAGCATACATTTCAAAAATCTCCAAACTTTTGCTATTGCTAATCTTTGTGAACTTTGCATACCCAGCACTGGTACATTC---TGATGGTGTCCACACTGCACTCTA
i chlSab2.chr29             I 2 C 0
s manLeu1.NW_012105520v1      1072781 273 +   1458659 ATAAACTGTTTTGTAGCTTCCAAGGTTTTGCAGTCA-TTTGCTCAGACA-TATGGGTTGGTGGAAGTGCTTTTTGTTCCTTCTCCC-AACCAATCACACAACCATGTAACTTCATGCCTGAGTTTCTGTGTGGTCCCCTATAGAGATTGGGTTTTTACATAGTTCTTTGCAGGCAGCATACATTTCAAAAATCTCCAAACATTTGCTATTGCTAATCTTTGTGAACTTTGCATACCCAGCGCTGGTACATTC---TGATGGTGTCTACACTGCACTCTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       278840 278 +   4111199 ATAAACTTTTTTGTAGCTTCTGAGGTTTTGCATTAATTTTGCTCAGGCA-TCTAGGTTGGTGGAAGTGCTTTCTGTTCCTTCTCCCAAACCAATCACACAACCATGTAACTTCATGCCTGAATTACTGTGTGGTCCTCTATAGTGATTGAGTTTTTACATAGTTCTTTGCAGGCAGCATGAATTTCAAAAATCTCCAAACTTTTGATATTGCTAATCTTTGTGAACTTTGCATACTCAGCGCTGGTACATTCTGATGATGGTGTCCACACTGCACTCTA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114049452 267 - 132174527 ATTAACATTTCTGTAGCTTTTGAGGTTTTGTATTCA-TTTGCTCAGGCA-TATGGGTTGGTGGAGATGCTTTCTGTTA--TCTCCC-AATC-----CACAGCGATGTAACTTCATGGCTGAGTTTCTGTGTGGTCCTCTCTAGTGATTGAGTTTTTACATAGTTCTTTGCAGGCAGCTTGAACTTAAGAAATCCCAAAACTTTTGCTATTGCTAATCTTTGTAAAC-TTGCACACCTAG-GCTGGTGCATTCTGATGATGGTGTTCACACTACATTCTG
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      3028563 269 -  42888418 ATAAACATTTTTGTAGCTTTTGAGGTTTTGTATTCA-TTTGCTCAGGCA-TACGGGTTGGTGGAGGTGCTTTCTGTTCCTTCTTCC-AATC-----CACAGTGCTATAACTTCATGCCTGAGTTTCTGTGTGGTCCTCTGTGGCAATTGAGTTTTTACGTAGTTCTTTGCAGGCAGCATGAATTTCAGAAATCCCAAAACTTTTGCTATTGCTAATCTTTGTAAAC-TTGCACACCCAG-GCTGGTCCATTCTGATGATGGTGTTCACACTGCATTCTA
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e cerAty1.NW_012001384v1      5105976 2445 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=872788.000000
s hg38.chr15_KI270850v1_alt    150354 166 +    430880 TGAAGAAAAGACTGATGATTGTTTATATTAAAATGCAGGAAGAGAATTGTAGCGGCAACTTTTGCTTCTCTAATCAGCAGCATCATAAGAGACTTACTATGTGTGGGCAATGGGGGAAAACGTTAATTTATACATTGAGATAGTTGTATTAAAATTGAGTGACTCT
s panTro5.chr15              66149581 166 +  83230942 TGAAGAAAAGACTGATGATTGTTTATATTAAAATGTAGGAAGAGAATTGTAGCAGCAACTTTTGCTTCTCTAATCAACAACACCAGAAGAGACTTACTGTGTGTGGTCAATGGGGGAGAATGTTAATTTATAAATTGAGATAGTTGTATTAAAATTGAGTGACTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83383452 166 +  99763055 TGAAGAAAAGACTGATGATTGTTTATATTAAAATGTAGGAAGAGAATTGTAGCAGCAACTTTTGCTTCTCTAATCAACAACACCAGAAGAGACTTACTGTGTGTGGTCAATGGGGGAGAATGTTAATTTATAAATTGAGATAGTTGTATTAAAATTGAGTGACTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       249866 165 +    378907 TGAAGAAAAGACTGATGATTGTTTATATTAAAATGTAGGAAGAGAATTGTAGCAGCAACTTTTGCTTCTCTAATCAACAACACCAGAAGAGACTTACTGTGTGTGGTCAA-GGGGGAGAATGTTAATTTATACATTGAGATAGTTGTATTAAAATTGAGTGACTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101781648 162 + 121039945 TGAAGAGAAGACTGATGA----TTATATTAAAATGTAGGAAGAGAATTGTAGCAGCAACTTTTCCTTCTCTAATCAACACCACCATAAGAGACTTACTGTGTGTGGTCAATGGGGGAGAATGTTAATTTATAAATTGAGATAGTTGTATTAAAATTGAGTGACTCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106474876 161 - 171882078 TGAAGAAAAGACTGATGATTGTTTATATTAAAATGCAGGAAGAGAATTGTAGCAGCAACTTTTGCTTTTCTAATCAA---CACTGTAAAAGACTTACTATGTGTGGGCAGTGGGGGAGAATGTTAATTTATAAATTGAGATAGTTGTATTAAAATCGAGTGA--CT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5108421 163 +   5160157 TGAAGAAAAGACTGATGATTGTTTATATTAAAATGCAGGAAGAGAATTGTAGCAGCAACTTTTGCTTCTCTAATCAA---CACTGTAAAAGACTTACTATGTGTGGGCAGTGGGGGAGAATGTTAATTTATAAATTGAGATAGTTGTATTAAAATCGAGTGACTCT
i cerAty1.NW_012001384v1    I 2445 C 0
s chlSab2.chr29               4102528 163 +  24206276 TGAAGAAAAGACTGATGATTGTTTGTATTAAAATGCAGGAAGAGAATTGTAGCAGCAACTTTTGCTTCTCTAATCAA---CACTGTAAAAGACTTACTATGTGTGGGCAGTGGGGGAGAATGTTAATTTATAAATTGAGATAGTTGTATTAAAATCGAGTGACTCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1073054 161 +   1458659 TGAAGAAAAGACTGATGATTGTTTATATTAAAATGCAGGAAGAGAATTGTAGCAGCAACTTTTGCTTCTCTAATCAA---CACTGTAAAAGACTTACTATGTGTGGGCAGTGGGGGAGAATGTTAATTTATAAATTGAGATAGTTGTATTAAAATCGAGTGA--CT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       279118 163 +   4111199 TGAAGAAAAGACTGATGATTGTTTATATTAAAATGCAGGAAGAGAATTGTAGCAGCAACTTTTGCTTCTCTAATCAA---CACCGTAAAAGACTTACTATGTGTGGGCAGTGGGGGAGAATGTTAATTTATAAATTGAGATAGTTGTATTAAAATTGAGTGACTCT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114049719 166 - 132174527 TGAAGAAAAGACTGATGATTGTTTATATTAAAATGCAGGAAGAGAATTGTAGCCACAAGTTTTGCTTCTCTAATCGGGAACACCATAAGAGACTTAATATATGTGGGCAGTGTGGGAGAATGTTAATTTATAAATTGAGATAGTTGTATTAAAATTGAATgagtct
i calJac3.chr10             C 0 I 180
s aotNan1.NW_018505940v1      3028832 166 -  42888418 TGAAGAAAAGACTGATGATTGTTTATATTAAAATGCAGGAAGAGAATTGTAGCCACAAGTTTTGCTTCTCTAATCAGGAACACCATAAGAGATTTAATATGGGTGGGCAGTGCGGGAGAATGTTAATTTATAAATTGAGATAGTTGTATTAAAATTGAATGAGTCT
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=410460.000000
s hg38.chr15_KI270850v1_alt    150520 92 +    430880 TACTGTGACATAAAGTGAATGTGTCTCTT--ATACAGCAGAAAACTATTAAATTTG-TTTTTTCTCAGCAGTATAAAATAAAGTGGAAAATGTGG
s panTro5.chr15              66149747 94 +  83230942 TATTTTGACATAAAGTGAATGTGTCTCTTTTATACAGCAGAAAACTATTAAATTTG-TTTTTTCTCATCAGTATAAAATAAAGCGGAAAATGTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83383618 94 +  99763055 TATTTTGACATAAAGTGAATGTGTCTCTTTTATACAGCAGAAAACTATTAAATTTG-TTTTTTCTCATCAGTATAAAATAAAGCGGAAAATGTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       250031 94 +    378907 TACTGTGACATAAAGTGAATGTGTCTCTCTTATACAGCAGAAAACTATTAAATTTG-TTTTTTCTCAGCAGTATAAAATAAAGTGGAAAATGTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101781810 94 + 121039945 TATTTTGACATAAAGTGAATGTGTCTCTTTTATACAGCAGAAAACTACTAAATTTG-TTTTTTCTCATCAGTATAAAATAAAGTGGAAAATGTGG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106475037 94 - 171882078 TATTTTGACATAAAGTGAATGTGTCTCTTTTATACAGCAGAAAACTATTAAATGTG-TTTTTTCTCAGCATTATAAAATAAAGTGGAAAATGTGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5108584 95 +   5160157 TATTTTGACATAAAGTGAATGTGTCTCTTTTATACAGCAGAAAACTATTAAATGTGTTTTTTTCTCAGCGTTATAAAATAAAGTGGAAAATGTGG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               4102691 94 +  24206276 TATTTTGACATAAAGTGAATGTGTCTCTTTTATACAGCAGGAAACTATTAGATGTG-TTTTTTCTCAGCATTATAAAATAAAGTGGAAAATGTGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1073215 95 +   1458659 TATTTTGACATAAAGTGAATGTGTCTCTTTTATACAGCAGAAAACTATTAAATGTGTTTTTTTCTCAGCACTATAAAATAAAGTGGAAAATGTGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       279281 94 +   4111199 TATTTTGACATAAAGTGAATGTGTCTCTTTTATACAGCAGAAAACTATTAAATTTG-GTTTTTCTCAGCATTATAAAATAAAGTGGAAAATGTGG
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      3028998 86 -  42888418 TATTTTTACATAAAGTGAATTTGTCTC----ATACAGCAGAAAACTAGTAAATTTG-TTTTTTCTCAGCGTTATA----AAAGTGGAAAATGTGG
i aotNan1.NW_018505940v1    C 0 I 2
e calJac3.chr10             114049885 180 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=119398.000000
s hg38.chr15_KI270850v1_alt    150612 32 +    430880 GAAGAATACAAATCCTTAACTTCTGTGCTTCT
s panTro5.chr15              66149841 32 +  83230942 GAAGAATACAAATTCTTAACTTCTGTGCTTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83383712 32 +  99763055 GAAGAATACAAATTCTTAACTTCTGTGCTTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       250125 32 +    378907 GAAGAATACAAATCCTTAACTTCTGTGCTTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101781904 32 + 121039945 GAAGAATACAAATCCTTAACTACTGTGCTTCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106475131 32 - 171882078 GAAGAATACAAGTCCTTAACTAGTGTGCTTCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5108679 32 +   5160157 GAAGAATACAAATCCTTAACTAGTGTGCTTCT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               4102785 32 +  24206276 GAAGAATACAAATCCTTAACTAGTATGCTTCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1073310 32 +   1458659 GAAGAATACAAATCCTTAACTAGTGTGCTTCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       279375 32 +   4111199 GAAGAATACAAATCCTTAACTACTGTGCTTTT
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018505940v1      3029084  2 -  42888418 I
e calJac3.chr10             114049885 180 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=161049.000000
s hg38.chr15_KI270850v1_alt    150644 34 +    430880 GCTTATTTCACACCCCTCAAATTTCTGATTCCTT
s panTro5.chr15              66149873 34 +  83230942 GCTTATTTCCCACCCCTCATATTTCTGATTCCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83383744 34 +  99763055 GCTTATTTCCCACCCCTCATATTTCTGATTCCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       250157 34 +    378907 GCTTATTTCCCACCCCTCATATTTCTGATTCCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101781936 34 + 121039945 GCTTATTTCCCACCACTCAAATTTCTGATTCCTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106475163 34 - 171882078 GCTTATTTCACACCCCTCATATTTCTGATTCCTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5108711 34 +   5160157 GCTTATTTCACACCCCTCATATTTCTGATTCCTT
i cerAty1.NW_012001384v1    C 0 I 1578
s chlSab2.chr29               4102817 34 +  24206276 GCTTATTTCACACCCCTCAAATTTCTGATTCCTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1073342 34 +   1458659 GCTTATTTCACACCCCTCATATTTCTGATTCCTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       279407 34 +   4111199 GCTTATTTCACACCCCTCAAATTTCTGATTCCTT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114050065 34 - 132174527 GCTTATTTCATACCCCTCAAATTTCTGATTCCTT
i calJac3.chr10             I 180 C 0
e aotNan1.NW_018505940v1      3029084  2 -  42888418 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=427899.000000
s hg38.chr15_KI270850v1_alt    150678 118 +    430880 TCAACTGTAGCTGGCTTTACTACTGAGTGGTGAAATTGCTGAACATACTTAAAACTACATCATTTAAGACTTTGAATTTTGAC--ATCTCCTCCTCTTCACAGTCTTTCAAATACTAGGC
s panTro5.chr15              66149907 117 +  83230942 ACAACTGTAGCTGGCCTTACTACTGAGTGGTGAAATTGCTGAACATACTTAAAATCACATCATTTAAGACTTTGAATTTTGAC--ATTTCCTCCTCTTCACAGTCTTT-AAATAGTAGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83383778 117 +  99763055 ACAACTGTAGCTGGCTTTACTACTGAGTGGTGAAATTGCTGAACATACTTAAAATCACATCATTTAAGACTTTGAATTTTGAC--ATTTCCTCCTCTTCACAGTCTTT-AAATAGTAGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       250191 117 +    378907 AGAACTGTAGCTGGCTTTACTACTGAGTGGCGAAATTGCTGAACATACTTAAAACCACATCATTTAAGACTTTGAATTTTGAC--ATTTCCTCCTCTTCACAGTCTTT-AAATACTAGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101781970 116 + 121039945 ACAACTGTAGCTGGCTTTACTACTGAGTGCTGAAATTGATGAACATACTTAAAACCACATCATTTAAGACTTTGAATTTTGAC--ATTTTCTCCTCTT--CAGTCTTTCAAATACTAGGC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106475197 118 - 171882078 ACAACTATAGCTGGCTTTACTCCTGAGTGGTGAAATTGATGAACATACTTAAAACCACATCATTTAAGACTTTGCATTTTGAC--ATTTCCTCCTCTTCACATTCTTTCAAATACTAGGC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               4102851 118 +  24206276 ACAACTATAGCTGGCTTTACTCCTGAGTGGTGAAATTGATGAACATACTTAAAAGCACATCATTTAAGACTTTGAATTTTGAC--ATTTCCTCCTCTTCACAGTCTTTCAAATACTAGGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1073376 118 +   1458659 ACAACTACAGCTGGCTTTACTCCTGAGTGGTGAAATTGATGAACATACTTAAAAGCACATCATTTAAGACTTTGAATTTTGAC--ATTTCCTCCTCTTCACAGTCTTTCAAATACTAGGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       279441 118 +   4111199 ACAACTATAGCTGGCTTTACTCCTGAGTGGTGAAATTGATGAACATACTTAAAACCACATCATTTAAGAGTTTGAATTTTGAC--ATTTCCTCCTCTTCACAGTCTTTCAAATACTAGGC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114050099 120 - 132174527 ATAACTGTAGTTGACTTTACTACTGAGTGGTAAAATTGATGAACATAGTTAAAACCATATCATTTAAGACTTTGAATTTTGACATATTTCCTCCTCTTGACAGTCTTTCAAATAGTAGGC
i calJac3.chr10             C 0 C 0
e aotNan1.NW_018505940v1      3029084   2 -  42888418 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e cerAty1.NW_012001384v1      5108745 1578 +   5160157 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=507511.000000
s hg38.chr15_KI270850v1_alt    150796 106 +    430880 AACCTGTAGGGTTCCACTGTGTCTGTCATGTGTTGTCCCTGTGTTACATGAAAGCAGCCCCAGTGAACTTGTGAATTTGCTCAGTCATTTCACTGGCTACTGGGTG
s panTro5.chr15              66150024 106 +  83230942 AACCTGTAGGGTTCCACTGTGTCTGTCATGTGTTGTCCCTGTGTTACATGAAAGCAGCCCCAGTGAACTTGTGAATTTGCTCAGTCATTTCGCTGGCTACTGGGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83383895 106 +  99763055 AACCTGTAGGGTTCCGCTGTGTCTGTCATGTATTGTCCCTGTGTTACATGAAAGCAGCCCCAGTGAACTTGTGAATTTGCTCAGTCATTTCACTGGCTACTGGGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       250308 106 +    378907 AACCTGTAGGGTTCCACTGTGTCTGTCATGTGTTGTCCCTGTGTTACATGAAAGCAGCCCCAGTGAACTTGTGAATTTGCTCAGTCATTTCACTGGCTACTGGGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101782086 104 + 121039945 AACCTGTAGGGTTCCAC--TGTCTGTCATGTACTGTCCCTGTGTTACATGAAAGCAGCCCCAGTGAACTTGTGAATTTGCTCAGTCATTTCACTGGCTACTGGGTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106475315 106 - 171882078 AACCTGTAGGGTTCCACTGTCTCTGTCGTGTGTTGTCCCTGTGTTACATGAAAACAGCCCCAGTGAACTTGTGAATTTGCTCAGTCATTTCACTGGCTACTGGGTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5110323 106 +   5160157 AACCTGTAGAGTTCCACTGTCTCTGTCATGTGTTGTCCCTGTGTTACATGAAAGCAGCCCCAGTGAACTTGTGAATTTGCTCAGTCATTTCACTGGCTACTGGGTG
i cerAty1.NW_012001384v1    I 1578 C 0
s chlSab2.chr29               4102969 106 +  24206276 AACCTGTAGGGTTCCATTGTGTCTGTCATGTGTTGTCCCTGTGTTACATGAAAGCAGCCCCAGTGAACTTGTGAATTTGCTCAGTCATTTCACTGGCTACTGGGTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1073494 106 +   1458659 AACCTGTAGGGTTCCACTGTCTCTGTCATGTGTTGTCCCTGTGTTACATGAAAGCAGCCCCAGTGAACTTGTGAATTTGCTCAGTCATTTCACTGGCTACTGGGTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       279559 106 +   4111199 AACCTGTAGGATTCCACTGTCTCTGTCATGTATTGTCCCTGTGTTACATGAAAGCAGCCCCAGTGAACTTGTGAATTTGTTCAGTCATTTCACTGGCTACTGGGTG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114050219 106 - 132174527 AACCTGTGCTGTGCCACTGTGTCTGTCATGTACTGTTTCTGTGTTACATGAAAGTAGCCCCAGTGACCTTGTGAATTTGCTCAGTCATTTCACTGGTTACAGGGTA
i calJac3.chr10             C 0 C 0
e aotNan1.NW_018505940v1      3029084   2 -  42888418 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=145717.000000
s hg38.chr15_KI270850v1_alt    150902 24 +    430880 AGGAAGAAGTAGGATTTTCTCTCT
s panTro5.chr15              66150130 24 +  83230942 AGGAAGAAGTAGGATTTTCTCTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83384001 24 +  99763055 AGGAAGAAGTAGGATTTTCTCTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       250414 24 +    378907 AGGAAGAAGTAGGATTTTCTCTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101782190 24 + 121039945 AGGAAGAAGTAGGATCTTCTCTCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106475421 24 - 171882078 AGGAAGAAGTAGGATTTTCTCTCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5110429 24 +   5160157 AGGAAGAAGTAGGATTTTCTCTCT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               4103075 24 +  24206276 AGGAAGAAGTAGGATTTTCTCTCT
i chlSab2.chr29             C 0 n 0
s manLeu1.NW_012105520v1      1073600 24 +   1458659 AGGAAGAAGTAGGATTTTCTCTCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       279665 24 +   4111199 AGGAAGAAGTAGGATTTTCTCTCT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114050325 24 - 132174527 AGGAAGAAGTAGGATTTTCTCCCT
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      3029086 24 -  42888418 AGGAAGAAGTAGGATTTTCTCCCT
i aotNan1.NW_018505940v1    I 2 C 0
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=210265.000000
s hg38.chr15_KI270850v1_alt    150926 36 +    430880 TAAAATTCCTTGGTGAAATCATTGGATGGGCACGGT
s panTro5.chr15              66150154 36 +  83230942 TAAAATTCCTTGGTGAAATCATTGGATGGGCATGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83384025 36 +  99763055 TAAAATTCCTTGGTGAAATCATTGGATGGGCATGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       250438 36 +    378907 TAAAATTCCTTGGTGAAATCATTGGATGGGCATGAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101782214 36 + 121039945 TAAAATTCCTTGGTGAAATCATTGGATGGGCATGGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106475445 36 - 171882078 TAAAATTCCTTGGTGAAATCACTGGATGGGCATGGT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5110453 36 +   5160157 TAAAATTCCTTGGTGAAATCGTTGGATGGGCATGGT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20314343 36 -  24206276 TAAAATTCCTTGGTGAAATCATTGGATGGGCATGGT
i chlSab2.chr29             I 10 C 0
s manLeu1.NW_012105520v1      1073624 36 +   1458659 TAAAATTCTTTGGTGAAATCATTGGATGGGCATGGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       279689 36 +   4111199 TAAAATTCCTTGGTGAAATCATTGGATGGACATGGT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114050349 36 - 132174527 TAAAATTCCTTGGTGAAATCATTGGATGGGCATGGT
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      3029110 36 -  42888418 TAAAATTCCTTGTTGAAATCATTAGATGGGCATGGT
i aotNan1.NW_018505940v1    C 0 I 57
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=95047.000000
s hg38.chr15_KI270850v1_alt    150962 23 +    430880 --------GTGTTTCTTT----------------AATTTTCCTTTTG
s panTro5.chr15              66150190 23 +  83230942 --------GTGTTTCTTT----------------AATTTTCCTTTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83384061 23 +  99763055 --------GTGTTTCTTT----------------AATTTTCCTTTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       250474 23 +    378907 --------GTGTTTCTTT----------------AATTTTCCTTTTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101782250 23 + 121039945 --------GTGTTTCTTT----------------AATTTTCCTTTTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106475481 23 - 171882078 --------GTGTTTCTTT----------------AATTTTCCTTTTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5110489 23 +   5160157 --------GTGTTTCTTT----------------AATTTTCCTTTTG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20314379 23 -  24206276 --------GTGTTTGTTT----------------AATTTTCCTTTTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1073660 23 +   1458659 --------GTGTTTCTTT----------------AATTTTCCTTTTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       279725 23 +   4111199 --------GTGTTTCTTT----------------AATTTTCCTTTTG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114050385 47 - 132174527 ATTTTAAAACACCATTTTAAAAAGGAAAATTAAAAATTTTCCTTTTG
i calJac3.chr10             C 0 I 10
e aotNan1.NW_018505940v1      3029146 57 -  42888418 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=1340115.000000
s hg38.chr15_KI270850v1_alt    150985 276 +    430880 GTCAAAAAT----CTGACAAAGCAAAGAC-TTTCAGTTGTTCTTGGTCTTTCAATAGGTTTAGTTTTTAAGTGTGTCTACTCTGACCAAAAATTGCCTTC-CTGTAATATGCTCCTTCCTTTAGAACACAGTTCTTAAGTA----GAGTTTGTTTGTTTAAATGTATAAAAATAAGTTAATGCATTCTATGCAGCGAGGTTTTGCATCAGAACCCTGAGTTCTCAATGT---GGCAGG-TTTAAGtgtc------------------------------------------------------------tagaacaccttttacctgttttttctattacttgctttttt
s panTro5.chr15              66150213 278 +  83230942 GTAAAAAAATCTACTGACAAAGCAAAGAC-TTTCAGTTGTTCTTGGTCTTTCAATAGGTTTAGTTTTCAAGTGTGTTTACTCTGACCAAAAACTGCCTTC-CTGTAATATGCTCCTTCCTTTAGAACACAGTTCTTAAGTA----GAGTTTGTTT----AAATGTATAAAA-TAAGTTAATGCATTATATGCAGCGAGGTTTTGCATCAGAACCCTGAGTTCTCAATGTTGTGGCAGG-TTTAAGtgtc------------------------------------------------------------tagaacaccttttagctgttatttctattacttgctttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83384084 278 +  99763055 GTAAAAAAATCTACTGACAAAGCAAAGAC-TTTCAGTTGTTCTTGGTCTTTCAATAGGTTTAGTTTTTAAGTGTGTTTACTCTGACCAAAAACTGCCTTC-CTGTAATATGCTCCTCCCTTTAGAACTCAGTTCTTAAGTA----GAGTTTGTTT----AAATGTATAAAA-TAAGTTAATGCATTATATGCAGCGAGGTTTTGCATCAGAACCCTGAGTTCTCAATGTTGTGTCAGG-TTTAAGtgtc------------------------------------------------------------tagaacaccttttagctgttatttctattacttgctttttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       250497 274 +    378907 GTAAAAAAT-CTACTGATAAAGCAAAGAC-TTTCAGTTGGTCTTGGTCTTTCAATAGGTTTAGTTTTTAAGTGTGTTTACTCTGACCAAAAACTGCCTTC-CTGTAATATGCT-CTTCCTTTAGAACTCAGTTCTTAAGTA----GAGTTTGTTT----AAATGTATAAAA-TAAGTTAATGCATTATATGCAGCGAGGTTTTGCATCAGAACCCTGAGTTCTC-ATGT-GTGGCAGG-TTTAAGtgtc------------------------------------------------------------tagaacaccttttacctgttttttctattacttgctttttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101782273 270 + 121039945 GTCAAAAAT----------CAGCAAAGAC-TTTCAATTGGTCTTGGTCTTTCAATAGGTTTAGTTTTTCAGTGTGTTTACTCTGACCAAAAACTGCCTTC-CTGTAATATGCTCCTTCCTTTAGAACACAGTTCTTAAGTA----GAGTTTGTTTGTTTAAATGTATAAAA-TAAGTTAATCCATTATATGCAGCGAGGTTTTGCATCAGAACC--GAGTTCTCAGTGTTGTGGCAGG-TTTAAGtgtc------------------------------------------------------------tagaacacctttcacctgttatttctattacttgctttttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106475504 334 - 171882078 GTCAAAAAT----CTGACAAAGCAAAGAC-TTTCAGTGGGTCTTGGTCTTTCAATAGATTTAGTTTTTAAGTGTGTTTACTCTGACCGAAAACTGCCTTC-CTGTAATATGCTCCTTCCTTTAGAACACAGTTCTTAAGTA----GAGTTTGTTT----AAATGTATAAAA-TAAGTTAATGCATTATATGCAGTGAGGTTTCACATCAGAACCCTGAGTTCTCAATGTTGTGGCAGG-TTTAAGTGTCACCTTTTACTTTTAAAGTAAGGTGACACTTAAAGGTAAAACACTTAAAGATGTTAAAAGGTAAAACATCTTTTACCTGATTTTtctcttacttgctttttt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5110512 333 +   5160157 GTCAAAAAT----CTGACAAAGCAAAGAC-TTTCAGTGGGTCTTGGTCTTTCAATAGATTTAGTTTTTAAGTGTGTTTACTCTGACTGAAAACTGCCTTC-CTGTAATATGCTCCTTCCTTTAGAAAACTGTTCTTAAGTA----GAGTTTGTTT----AAATGTATAAAA-TAAGTTAATGCATTATATGCAGCGAGGTTTCGCATCAGAACCCTGAGTTCTCAATGTTGTGGCCAG-TTTAAGTGTCACCTTTTACTTTTAAAGTAAGGTGACCCTTAAAGGTAAAACACTTAAAGATGTTAAAAGGTAAAACATC-TTTACCTGATTTTTCTCTTACTTGTTTTTTT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20314402 334 -  24206276 GTCAAAAAT----CTGACAAAGCAAAGAC-TTTCAGTGGGTCTTGGTCTTTCAATAGGTTTAGTTTTTAAGTGTGTTTACTCTGACCGAAAACTGCCTTC-CTGTAATATGCTCCTTCCTTTAGAACACAGTTCTTAAGTA----GAGTTTGTTT----CAATGTATAAAA-TAAGTTAACGCATTATATGCAGTGAGGTTTTGCATCAGAACCCTGAGTTCTCAATGTTGTGGCAGG-TTTAAGTGTCACCTCTTACTTTTAAAGTAAGGTGACACTTAAAGGTAAAACACTTAAAGATGTTAAAAGGTAAAACATCTTTTACCTGATTTTtctcttacttgctttttt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1073683 334 +   1458659 GTCAAAAAT----CTGACAAAGCAAAGAC-TTTCAGTGGGTCTTGGTCTTTCAATAGGTTTAGTTTTTAAGTGTGTTTACTCTGACTGAAAACTGCCTTC-CTGTAATATGCTCCTTCCTTTAGAAAACAGTTCTTAAGTA----GAGTTTGTTT----AAATGTATAAAA-TAAGTTAATGCATTATATGCAGTGAGGTTTCGCATCAGAACCCTGAGTTCTCAATGTTGTGGCCAG-TTTAAGTGTCACCTTTTACTTTTAAAGTAAGGTGACACTTAAAGGTAAAACACTTAAAGATGTAAAAAGGTAAAACATCTTTTACCTGATTTTtctcttacttgttttttt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       279748 309 +   4111199 GTCAAAAAT----CTGACACAGCAAAGAC-TTTCAGTGGGTCTTGGTCTTTCAATAGGTTTAGTTTTTAAGTGTGTTTACTCTGACCGAAAACTGCCTTC-CTGTAATAGACTCCTTCCTTTAGAACACAGTTCTTAA-TA----GAGTTTGTTT----AAATGTATAAAA-TAAGTGAACGCATTATATGCAGCGAGGTTTTGCATCAGAACCCTGAGTTCTCAATGTTGTGGCCAG-TTTAAGTGTCACCTTTTACTTTTAAAGTAAA------------------------AAGTGTTTTAAAAGGTAAAACATCTTTTACCTGTTTTTtctcttacttgctttttt
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114050442 271 - 132174527 GTCAAAAAT----CTGACAAAGCAAAGAC-TTTCAGTTGGTCTTGGTCTTTCAATATGTTTAGTTATTAAGTATGTTTACTCTGACCAAAACCTGCCTTCTTTGTAATATGCTCCTTCCTTTAGAACACAGTTCTTAAGTAGAGTGAGTTTGTTT----AAATGTGTAAAA-TAAGTGAATGCATTATATGCAGCAAAGTTTTGCATC-GAACCCTGAGTTCTCAATGTTGTGGCAAGTTTTAAGTGTG------------------------------------------------------------CAGAACACTTTTTACCTGTTATTTCTGTTACCT--------
i calJac3.chr10             I 10 C 0
s aotNan1.NW_018505940v1      3029203 276 -  42888418 GTCAAAAAT----CTGACAAAGCAAAGACTTTTCAGTTGGTCTTGGTCTTTCAATATGTTTAGTTATTAAGTGTGTTTACTCTGACCAAAAACTGCCTTCTTTGTAATATGCTCCTTCCTTTAGAACACAGTTCTTAAGTAGAATGAGTTTGTTT----AAATGTGTAAAA-TAAGTGAATGCATTATATGCAGCGAAGTTTTGCATA-GAACCCTGAGTTTTCAATGTTGTGTCAAG-TTTAAGTGTG------------------------------------------------------------TAGAACACCTTTTACCTGTTATTTCTGTTACCTTTTTT---
i aotNan1.NW_018505940v1    I 57 I 18
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=91565.000000
s hg38.chr15_KI270850v1_alt    151261 22 +    430880 atttttg-gggtaaatgatatct
s panTro5.chr15              66150491 22 +  83230942 atttttg-gggtaaatgagatct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83384362 22 +  99763055 atttttg-gggtaaatgagatct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       250771 22 +    378907 atttttg-gggtaaatgatatct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101782543 22 + 121039945 atttttg-gggtaaatgatatct
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106475838 22 - 171882078 atttttg-aggtaaatgatatct
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5110845 22 +   5160157 ATTTTTG-GGGTGaatgatatct
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20314736 22 -  24206276 atttttg-gggtaaatgatatct
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1074017 22 +   1458659 atttttg-gggtaaatgatatct
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       280057 22 +   4111199 atttttg-gggtaaatggtatct
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114050713 23 - 132174527 ATTTTTGAGGGGGGGCGGTAACT
i calJac3.chr10             C 0 I 1
e aotNan1.NW_018505940v1      3029479 18 -  42888418 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=1425854.000000
s hg38.chr15_KI270850v1_alt    151283 289 +    430880 ttctcagggaggccttccctcagcaccatgtttaagagggcatctccctcatttgctattccttcttctgttttattttgctatatggaatttgctactatgtgaaaactattt----taatgttttatttacctgtgttacccctagaataatatctatgaaggtagggatttttatctgttccttctgtgcctacagagtgttgaggagtatggtgtctggcacgttgtaggtgcacagtgacagctgaattaataaCGTCAGGGAGAGTTTGTAGGATGGGG-CTCAAGGT
s panTro5.chr15              66150513 292 +  83230942 t-ctcagggaggccttccctcagcaccatgttttaaagggcatctgcctcatttgctattcattcttctgttttatttttctctatagaatttgttactatgtgaaaactatttattttaatgttttatttacctgtgttacccctagaataatatctatgaaggtagggatttttgtctgttccttctgtgcctacagagtcttgaggagtatggtgtctggcacgttgtaggtgcacaatgaCAGCTGAATTAACAATGTCAGGGAGAGTTTGTAGGATGGTG-CTCGAGGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83384384 292 +  99763055 t-ctcagggaggccttccctcagcaccatgttttaaagggcatctgcctcatttgctattccttcttctgttttatttttctctatagaatttgttactatgtgaaaactatttattttaatgttttatttacctgtgttaccactagaataatatctatgaaggtagggatttttgtctgttccttctgtgcctacagagtcttgaggagtatggtgtctggcacgttgtaggtgcacaatgaCAGCTGAATTAACAATGTCAGGGAGAGTTTGTAGGATGGGG-CTCGAGGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       250793 292 +    378907 t-ctcagggaggccttcccgcagcaccatgttttaaagggcatctccctcatttgctattccttcttctgttttatttttctctatagaatttgttactatgtgaaaactatttattttaatgttttatttacctgtgttacccctagaataatatctatgaaggtagggatttttatctgttccttctgtgcctacagagtcttgaggagtatggtgtctggcacgttgtaggtgcacagtgaCAGCTGAATTAACAGTGTCAGGGAGAGTTTGTAGGATGGGG-CTCGAGGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101782565 275 + 121039945 t-ttcagggaggtcttccctcagcaccatgtttaaaatggcgtctccctcatttgctattccttcttctgttttatttttctctatagaatttgttactatgtgaaaactatttattttaatgttttatttatctgtgttacccctagaataatatctatgaaggtagggatttttgtctgttccttctgtgcctgcagagtcttgaggagtatggtgtctggcacattgtaggtgcacaatgaCAGCTGAATTAACAATGTCAGGGAGAGTTTGT------------------
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106475860 290 - 171882078 ttctcagggtggccttccctcagcaccatgtttaaaatggcatctccttcatttgctattc---cttgtgttttatttttctctatagaatttgttactgtgtgaaagctatttattttaatgttttatttacctgtg-tacccctagaataatatctatggaggtagagatttttgtctgttccttctgtccctacagaatcttgaggagtatggtgtctggcacattgtgggtgcacaatgaCAGCTGATTTAACAACTTCAGGGAGAGTTTGTAGGATGGGGGCTCGAGGT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5110867 290 +   5160157 ttctcagggtggccttccctcagtaccatgtttaaaatggcatctccttcatttgctattc---cttgtgttttatttttctctatagaatttgttactatgtgaaagctctttattttaatgttttatttacctgtg-tacccctagaataatatctatgaaggtagggatttttgtctgttccttctgtccctacagaatcttgaggagtatggtgtctggcacattgtgggtgcacaatgaCACCTGAATTAACAACATCAGGGAGAGTTTGTAGGATGGGGACTCGAGGT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20314758 289 -  24206276 ttctcagggtggccttccctcagcaccatgtttaaaatggcatctccttcatttgctattc---cttgtgttttatttttctctatagaatttgttactgtgtgaaagctatttattttaatgttttatttacctgtg-tacccctagaatagtctctatggaggtagcgatttttgtctgttccttctgtacctacagaatcttgaggagtatggtgtctggcacattgtgggtgcacaatgaCAGCTGAATTAACAACTTCAGGGAGAGTTTGTAGGATGGGG-CTGGAGGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1074039 290 +   1458659 ttctcagggtggccttccctcagcaccatgtttaaaatggcatctccttcatttgctattc---cttgtgttttatttttctctatagaatttgttactatgtgaaagctctttattttaatgttttatttacctgtg-tacccctagaataatatctatgaaggtagggatttttgtctgttccttctgtccctacagaatcttgaggagtatggtgtctggcacattgtgggtgcacaatgaCACCTGAATTAACAACATCAGGGAGAGTTTGTAGGATGGGGACTCGAGGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       280079 292 +   4111199 ttctcagggaggccttccgtcagcaccatgtttaaaatggcatctccttcatttgctattccttcttctgttttatttttctctatagaatttgttactgtgtgaaagctatttattttaatgttttatttacctgtg-tacccctagaataatatctatggaggtagagatttttgtctgttccttctgtacctacagaatcttgaggattatggtgtctggcacattgtaggtgcacaatgaCAGCTGAATTAACAACTTCAGGGAGAGTTTGTAGGCTGGGG-CTCGAGGT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114050737 277 - 132174527 ttctcagggaggccttccctcagcaccatgtttaaattgccatccccctcatttgctatttcttcttctgttttatttttctctacagaatttgttactatctgaaaactatt-----caatgttttatttacttgtgttacccctagaataatatctacgaaggtagggatttttctcggatccttctgtacctgcagagcttc---gagtgtggt-------acactgtagatgcacaataat-gctgaattaaCAATGTCATGGAGAGTTTGTAGAATGGAG-CTAGAGGT
i calJac3.chr10             I 1 C 0
s aotNan1.NW_018505940v1      3029497 275 -  42888418 ttctcagggaggccttccctcagcaccatatttaaattgccatccccttcatttgctatgtct-----tgttttatttttctctacagaatttgttactatctgaaaattatt-----caatgttttatttacctgtgttacccctagaataatatctatgaaggtagggatttttgtctgatccttctgtacctgcagagccttgaggagtgtggt-------acactgtaagtgcacaatgat-gctgaattaaCAATATCAGGGAGAGTTTGTAGAATGGAG-CTAGAGGT
i aotNan1.NW_018505940v1    I 18 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e macNem1.NW_012011056v1      6188264 4038 +   6271500 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=1389848.000000
s hg38.chr15_KI270850v1_alt    151572 216 +    430880 GTAGGGCAAGTCAGTTTTTAGATTTGAGGTTATTAGCAGGAGA--------Cgatgtggggggaaaa-cacatgttttaatgtcagactgggtttgaatctggtctctccaacttaccctttgaccttggtgttaaataatttaacctttgaaagatcaa-cttttt-cactagtgaaac--gggaaatagtatctttttaatggggattaaatgtaatatcaaatata
s panTro5.chr15              66150805 228 +  83230942 GTAGGGCAAGTCAGTTTTTAGATTTGAGGTCATTAGCAGGAGATCCTCTTACgatgtggggggaaaaacacatgttttaacgtcagactgggtttgaatctggtctctccaacttaccctttgaccttggtgttaaatgatttaacctttgaaagatcaa-tttttttcactagtgaaataggggaaataatatctttttaatggggattaaatgtaatatcaaatata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83384676 228 +  99763055 GTAGGGCAAGTCAGTTTTTAGATTTGAGGTCATTAGCAGGAGATCCTCTTACgatgtggggggaaaaacacatgttttaacgtcagactgggtttgaatctggtctctccaacttaccctttgaccttggtgttaaatgatttaacctttgaaagatcaa-tttttttcactagtgaaatagtggaaataatatctttttaatggggattaaatgtaatatcaaatata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       251085 225 +    378907 GTAGGGCAAGTCAGTTTTTAGATTTGAGGTCATTAGCAGGAGA-TCTCTTACgatgtggggggaaaaacacatgttttaacgtcagactgggtttgaatctggtctctccaacttaccctttgaccttggtgttaaat-atttaacctttgaaagatcaa-tttttt-cactagtgaaataggggaaatagtatctttttaatggggattaaatgtaatatcaaatata
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101782840 219 + 121039945 --------AGTCAATTTTTAGATTTGAGGTCATTAGCAGGAAATCTTCTTAtgatgtggagggaaaaacccatgttttaacgtcagactgggtttgaatctggtctctccaacttaccctttgaccttggtgttaaatgatttaacctttgaaagatcaa-tttttt-cactagtgaaataggggaaatagtatctttttaatggggattaagtgtaatatcaaatata
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106476150 226 - 171882078 GTAGGGCAAGTCAGTTTTTAGATTTGAGGTCATTAGCAGGAGATCCTCTTAtgatgt-gggggaaaaacacatgttttaacatcagactgggtttggatctggtctctccaacttaccctttgaccttggtgttaaataatgtaacctttgaaagatcag-tttttt-cagtggtgaagtaggggaaatactatctttttaatggggattaaatgtaataTAAAATATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6192315 226 +   6271500 GTAGGGCAAGTCAGTTTTTAGATTTGAGGTCATTAGCAGGAGATCCTCTTAtgatgt-gggggaaaaacacatgttttaacatcagactgggtttggatctggtctctccaacttaccctttgaccttggtgttaaataatgtaacctttgaaagatcag-tttttt-cagtggtgaagtaggggaaatactatctttttaatggggattaaatgtaatataaaatata
i macNem1.NW_012011056v1    M 4038 C 0
s cerAty1.NW_012001384v1      5111157 226 +   5160157 GTAGGGCAAGTCAGTTTTTAGATTTGAGGTCATTAGCAGGAGATCCTCTTAtgatgt-gggggaaaaacacacgttttaacatcaaactgggtttggatctggtctctccaacttaccctttgaccttggtattaaataatgtaacctttgaaagatcag-tttttt-cagtggtgaagtaggggaaatagtatctttttaatggagattaaatgtaataTAAAATATA
i cerAty1.NW_012001384v1    C 0 M 540
s chlSab2.chr29              20315047 227 -  24206276 GTAGGGCAAGTCAGTTTTTAGATTTGAGGTCATTAGCAGGAGATCCTCTTAtgatgt-gggggaaaaacacatgttttaacatcagactgggtttggatctggtctctccaacttaccctttgaccttggtgttaaataatgtaacctttgaaagatcagttttttt-cagtggtgaagtaggggaaatagtatctttttaatggggattaaatgtaataTAAAATATA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1074329 226 +   1458659 GTAGGGCAAGTCAGTTTTTAGATTTGAGGTCATTAGCAGGAGATCCTCTTAtgatgt-gggggaaaaacacatgttttaacatcagactgggtttggatctggtctctccaacttaccctttgaccttggtgttaaataatgtaacctttgaaagatcag-tttttt-cagtggtgaagtaggggaaatagtatctttttaatggagattaaatgtaatataaaatata
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       280371 227 +   4111199 GTAGGGCAAGTCAATTTTTAGATTTGAGGTCATTAGCAGGAGATCATCTTAtgatatggggggaaaaacacatgttttaacatcagactgggtttgaatctggtctctccaacttaccctttgaccttggtgttaaataatttaacctttgaaagatcag-tttttt-cagtggtgaagtaggggaaatagtatctttttaatggggattaaatgtagtataaaatata
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114051014 217 - 132174527 GTAGGGCAAG------TTTAGATTTGAGGTTGTTAGCAGGAGATTGTCTTAtgatgtgaagggaaaaacacatgttttagtgtcagactgggtttgaatctggt-tcttcaacttaccctttgacgttggtgttaaataatttaacctttgaaagatcag-tttttt-cacgagtgaaatgggggaaa---tatctttttaatgaggattaaatgtaatatcaaacata
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      3029772 220 -  42888418 GTAGGGCAAG------TTTAGATTTGAGGTTGTTAGCAGGAGATCGTCTTAtgatgtgaagggaaaaacacatgttttaatgtcagactgggtttgaatctggt-tcttcaacttaccctttgaccttggtgttacataatttaacctttgaaagatcag-tttttt-cactagtgaaataggggaaatagtatctttttaatgaggattaaatgtaatatccaacata
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=908289.000000
s hg38.chr15_KI270850v1_alt    151788 165 +    430880 atgctctGTAAATGTTAGTTTTGTCTTTCCCCTTGTGTGCCAGCATTGTGGAAGTCTGAAAGCAACCTGAATTTACCAGTCTGTTTCTGGAGCCTTCTGGGGTCATTACTTTGATTACTTTTGACAGATACATTCTTTTCAGCAGCCTGCATTGCCAGCATAACA
s panTro5.chr15              66151033 165 +  83230942 atgctctGTAAATGTTAGTTTTGTCTTTGCCGCTGTGTGCCAGCATTGTGAAAGTCTGAAAGCAACCTGAATTTACCAGTCTGTTTCTGGAGCCTTCTGGGGTCATTACTTTGATTACTTTTGACAGATACATTCTTTTCAGCAGCCTGTGTTGCCACCATAACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83384904 165 +  99763055 atgctctGTAAATGTTAGTTTTGTCTTTGCCGTTGTGTGCCAGCATTGTGGAAGTCTGAAAGCAACCTGAATTTACCAGTCTGTTTCTGGAGCCTTCTGGGGTCATTACTTTGATTACTTTTGACAGATACATTCTTTTCAGCAGCCTGTGTTGCCAGCATAACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       251310 164 +    378907 atgctctGT-AATGTTAGTTTTGTCTTTCCCCTTGTGTGCCAGCATTGTGGAAGTCTGAAAGCAACCTGAATTTACCAGTCTGTTTCTGGAGCCTTCTGGGGTCATCACTTTGATTACTTTTGACAGATACATTCTTTTCAGCAGCCTGCATTGCCAGCATAACA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101783059 165 + 121039945 atgctctGTAAATGTTAGTTTTGTCTTTCCCCTTGTGTGCCAGCATTGTGGAAGTTTGAAAGCAACCTGAATTTACCAGTCTGTTTCTGGAGCCTTCTGGGGTCATTACTTTGATTACTTTTGACAGATACATTCTTTTCAGCAGTCTGTATTGCCAGCATAACA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106476376 165 - 171882078 ATGCTCTGTGAATGTTAGTTTTGTCTTTCTCCTTGTGTGCCAGCATTGTGGAAGTCTAAAAGCAACCTGCATTTACCAGTCTGTTTCTGGAGCCTTCTGGGGTCATTACTTTGATTCCTTTTGACAGATACATTCTTTTCAGCAGCTTGTGTTGCCAGCATAACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6192541 165 +   6271500 atgctctGTGAATGTTAGTTTTGTCTTTCTCCTTGTGTGCCAGCATTGTGGAAGTCTAAAAGCAACCTGCATTTACCAGTCTGTTTCTGGAGCCTTCTGGGGTCATTACTTTGATTCCTTTTGACAGATACATTCTTTTCAGCAGCTTGTGTTGCCAGCATAACA
i macNem1.NW_012011056v1    C 0 M 2842
s chlSab2.chr29              20315274 165 -  24206276 ATGCTCTGTGAATGTTAGTTTTTTCTTTCTCCTTGTGTGCCAGCATTGTGGAAGTCTAAAAGCAACCTAAATTTACCAGTCTGTTTCTGGAGCCTTCTGGGGTCATTACTCTGATTCCTTTTGACAGATAAATTCTTTTCAGCAGCCTGTGTTGCCAGCATAACA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1074555 165 +   1458659 atgctctGTGAATGTTAGTTTTTTCTTTCTCCTTGTGTGTCAGCATTGTGGAAGTCTAAAAGCAACCTGCATTTACCAGTCTGTTTCTGGAGCCTCCTGGGGTCATTACTTTGATTCCTTTTGACAGATACATTCTTTTCAGCAGCTTGTGTTGCCAGCATAACA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       280598 165 +   4111199 atgctctGTAAATGTTAGTTTTTACTTTCTCCTTTCATGCCAGCATTGGGGAAGTCTAAAAGCAACCTGAATTTACCAGTCTGTTTCTGGAACCTTCTGGAGTCATTACTTTGATTCCTTTTGACAGATAAATTCTTTTCAGCAGCCTGTGTTGCCAGCATAACA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114051231 164 - 132174527 atgctctgtacaTGTTAGTTTTGTCTTTCCCCTTATGTGCCAGCATTGTAAAAGTCTAAAAGCAACCTGAACTTACCAGTTTCTTTCTGGAGCGCTCTGGGGTCATTAC-TTGATTACTTTTGACAGATACATTCTTTTCAGCAGCCTATGTTGCCAACGTAACA
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      3029992 165 -  42888418 atgctctgcacaTGTTAGTTTTGTCTTTCCCCTTATGTGCCAGCATTGTAGAAATCTAAAAGCAACCTGAATTTACCAGTTTGTTTCTGGAGCGTTCTGGGGTCATTACTTTGATTACTTTTGACAGATACATTCTTTTCAGCAGCCTGTGTTGCCAACATAACA
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e cerAty1.NW_012001384v1      5111383 540 +   5160157 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=2550477.000000
s hg38.chr15_KI270850v1_alt    151953 596 +    430880 ATGACCTGTCCCTTTGACCAGTGTGGG-GGACAGACACTTTGTCATCCCTCTTTTAATCCGTGTATCAGAACAACTCCT-ACAAGTTCTGGCTTTGAAACATGTTTAGAGGAGTTTATAATTCCGAACAGTTCAGATGACATCAGCCCTTTCTTAGAGTCCTCTGAGTTTGCTCAGCTTCCTCATTCCAGTGTGGCGGGAACCATTCAGTTAAATTGATGTTTGTGGTCTTTACACATAGTCATCCTAAGTTTCTTGCAAATCATGAGCTATCAGAGGGCTACTAAGTCACTAGTTTGTCTCTGTAGATTTCTCTAATCcaagcttgtccaa-ccgcagcctgcaggctgcatgcagcctgtgaaggctttgaatgtggcccaatacaaattcgtaaacgttcttaaaacattggccgggcacggtggctcacacctgtaatcccagcactttgggaggccgaggt------------------gggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacgaaaa-ttagctgggcatggtggcacacgcctatcatcccagctactcgggaggctgag
s panTro5.chr15              66151198 598 +  83230942 ATGACCTGTCCCTTTGACCAGTGTGAG-GGACAGACACTTTGTCATCCTTCTTTTAATCCTTGTATCAGAACAACTCTT-ACGAGTTCTGGTTTTGAAACATGTTTAGAGGAGTTTATAATTCCGAACAGTTCAGATGACATCAGCCCTTTCTTAGAGTCCTCTGAGTTTGCTCAGCTTCCTCATTCCAGGGTGGTGGGAACCATTCAGTTAAATTGATGTTTGTGGTCTTTACACATAGTCATCCTAAGTTTCTTGCAAATCACGAAACATCAGAGGGCTACTAAGTCACTAGTTTGTCTCTGTAGATTTCTCTAATCcaagcttgtccaaacggtggcctgcaggctgcatgcagcctgtgaaggctttgaatgtggcccaacacaaattcgtaaactgtcttaaaacattggctgggcatggtggcttacgcctgtaatcctagcactttgggaggccaaggc------------------gggtggatcacctgaggtcaggagttcaagaccagcttggtcatcatagtgaaaccctgtctctactaaaaatacaaaaaatcagctgggtattgtggcgggtgcctgtaatctcagctactcgagaggctgag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83385069 599 +  99763055 ATGACCTGTCCCTTTGACCAGTGTGAG-GGACAGACACTTTGTCATCCTTCTTTTAATCCTTGTATCAGAACAACTCTTAACAAGTTCTGGTTTTGAAACATGTTTAGAGGAGTTTATAATTCCGAACAGTTCAGATGACATCAGCCCTTTCTTAGAGTCCTCTGAGTTTGCTCAGCTTCCTCATTCCAGGGTGGTGGGAACCATTCAGTTAAATTGATGTTTGTGGTCTTTACACATAGTCATCCTAAGTTTCTTGCGAATCATGAGAGATCAGAGGGCTACTAAGTCACTAGTTTGTCTCTGTAGATTTCTCTAATCcaggcttgtccaaacggtggcctgcaggctgcatgcagcctgtgaaggctttgaatgtggcccaacacaaattcgtaaactgtcttaaaacattggctgggcatggtggcttacgcctgtaatcctagcactttgggaggccaaggc------------------gggtggatcacctgaggtcaggagttcaagaccagcttggtcatcatagtgaaaccctgtctctactaaaaatacaaaaaatcagctgggtattgtggcgggtgcctgtaatctcagctactcgagaggctgag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       251474 590 +    378907 ATGACCTGTCCCTTTGACCAGTGTGAG-GGACAGACACTTTGTCATCCCTCTTTTAATCCTTGTATCAGAACAACTCTT-ACAAGTTCTGGTTTTGAAACATGTTTAGAGGAGTTTATAATTCCGAACAGTTCAGATGACATCAGCTCTTTCTTAGAGCCCTCTAAGTTTGCTCAGCTTCCTCATTCCAG-GTGGTGGGAACCATTCAGTTAAATTGATGTTTGTGGTCTTTACACATAGTCATCCTAAGTTTCTTGCAAATCACGAAACATCAGAGGGCTGCTAAGTCACTAGTTTGTCTCTGTAGATTTCTCTAATCcaggcttgtccaaaccgtggcctgcaggctgcatgcagcctgtgaagg-tttgaatgtggcccaacacaaattcgtaaactgtcttaaaacattggct-ggcatggtggcttatgcctgtaatcccagcactttgggaggccaaggc------------------aggtggatcacctgaggtcaggagttcaagaccagc-tggtcatcatagtgaaaccctgtctctactaaaaatacaaaaa-tcagctgggtgttgtggcg-gtgcct-taatc-cagctactcgagaggctgag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101783224 596 + 121039945 GTGACCTGTCCCTTTGACCAGTGTGAG-GGACAGACACTTTGTCATCCCTCTTTTAATCCGTGTATCAGAACAACTCTT-ACGAGTTCTGGCTTTGAAACATGTTTAGAGGAGTTTATAATTCCAAACAGTTCAGATGACATCAGCCCTTTCTTAGAGTCCTCTGAGTTTGCTCAGCTTCCTCATTCCAGTGTGGTGGGAACCATTCAGTTAAATTGATGTCTGTGGTCTTTACACATAGTCATCCTAAGTTTCTTGCAAATCACGAAACATCAGAGGGCTACTAAGTCACTAGTTTGTCTCTGTAGATTTCTCTAATCcaagcttgtccaa-ccgcggcctgcaggctgcatgcagcctgtgaaggctttgaatgtggcccaatacaaattcgtaaactttcttaaaacattggccgggcatggtggctcacgcctgtaatcccagcactttgggaggccgaggt------------------gggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaagtacaaaaa-ttagctgggcgtggtggcacgcgcctataatcccagctactcgggaggctgag
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106476541 582 - 171882078 ATGTCCTGTCCCTTTGACCAGTGTGGG-GGACAGACACTTTGTCATCCCTTTTTTAATCCGTGTGTCAGAACAACTCTT-ATGAGTTCTGGCTTTGAAATATATTTAGAGGAGTTTATAATTTCAAACAGTTCAGATGACATCAGCCCTTTCTTATAGTCCTCTGAGTTTGCTCAGCTTCCTCATTCCAATGTGGTGGGAACCATTCAGTTAAATTGATGTTTGTCGTCTTTATGCATAGTCATCCTAAGTTTCTTGCAAATCACGAAAGATCAGAGGGCTGCTAGGTCACTAGTTTGTCTTTGTAGATTTCTCTAATCcaagcttgtccaa-ctgcgtcctgcaggctgcatgcagcctgtgaaggctttgaatgtggcccaacacaaattcacaaactttcttaaaacattggccgggcatggtggctcacgcctgtaatcctagcactttaggaggccgaggc------------------gggtggatcacctgagg-caggagttcgagaccagcctggccagca-------------tctctactaaaaatacaaaaa-ttagctgggcgtggtggcatgcgcctataatcccagctacttgggaggctgag
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20315439 578 -  24206276 ATGTCCTGTCCCTTTGACCAGTGTGGG-GGACAGACACTTTGTCATCCCTCTTTTAATCCGTGTATCAGAACAACTCTT-ATGAGTTCTGGCTTTGAAATATATTTAGAGGAGTTTATAATTTCAAACAGTTCAGATGACATCAGCC----CTTATAGTCCTCTGAGTTTGCTCAGCTTCCTCATTCCAATGTGGTGGGAACCTTTCAGTTAAATTGATGTTTGTCGTCTTTCCACATCGTCATCCTAAGTTTCTTGCAAATCACGAAAGATCAGAGGGCTGCTAGGTCACTAGTTTGTCTGTGTAGATTTCTCTAATCcaagcttgtccaa-ctgcgtcctgcaggctgcatgcagcctgtgaaggctttgaatgtggcccaacacaaattcacaaactttcttaaaacatGggccgggcatggtggctcacacgtgtaatcctagcactttaggaggctgaggc------------------gggtggatcacctgagg-caggagttcgagaccagcctggccaaca-------------tctctactaaaaatacaaaaa-ttaactgggtgtggtggcatgcgcctataatcccagctactcgggaggctgag
i chlSab2.chr29             C 0 I 1365
s manLeu1.NW_012105520v1      1074720 582 +   1458659 ATGTCCTGTCCCTTTGACCAGTGCGGG-GGACAGACACTTTGTCATCCCTCTTTTAATCCATGTATCAGAACAACTCTT-ATGAGTTCTGGCTTTGAAATATATTTAGAGGAGTTTATAATTTCAAACAGTTCAGATGACATCAGCCCTTTCTTATAGTCCTCTGAGTTTGCTCAGCTTCCTTATTCCAATGTGGTGGGAACCATTCAGTTAAATTGATGTTTGTCGTCTTTATGCATAGTCATCCTAAGTTTCTTGCAAATCACGAAAGATCAGAGGGCTGCTAGGTCACTAGTTTGTCTTTGTAGATTTCTCTAATCcaagcttgtccaa-ctgcgtcctgcaggctgcatgcagcctgtgaaggctttgaatgtggcccaacacaaattcacaaactttcttaaaacattggccgggcatggtggctcacgcctgtaatcctagcactttaggagactgaggt------------------gggtggatcacctgagg-caggagttcgagaccagcctggccagca-------------tctctactaaaaatacaaaaa-ttagctgggcgtggtggcatgcgcctataatcccagctactcgggaggctgag
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       280763 600 +   4111199 ATGTCCTGTCCCTTTGACCAGTGTGGG-GGACAGACACTTTGTCATCCCTCTTTTAATCCGTGTATCAGAGCAACTCTT-AGGAATTCTGGCTTTGAAATATATTTAGAGGAGTTTATAATTTCAAACAGTTCAGATGACATCAGCCCTTTCTTATAGTCCTCTGAGTTTGCTCAGCTTCCTCGTTCCATTGTGGTGGGAACCATTCAGTTAAATTGATGTTTGTCGTCTTTACGCATAGTCATCCTAAGTTTCTTGCAAATCACGAAAGATCAGAGGGCTGCTAGGTCACTAGTTTGTCGTTGTAGATTTCTCTAATCcaagcttgtccaa-ccgtgtcctgcaggctgcacgcagcctgtgaaggctttgaatgtggcccaacacaaattcgtaaactttcttaaaacattggccgggcatggtggctgacgcctgtaatcctagcactttaggaggctgaggcgggtggatcacctgaggtgggtggatcacctgagg-caggagttcgagaccagcctggccaaca-------------tctttactaaaaatacaaaaa-ttagctgggcgtggtggcacgcgcctataatcccagctacttgggaggctgag
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114051395 573 - 132174527 ATGACCTGTACCTTTGACCAGTGTGGGAGGACAGACAGTTTGTCATCCCTCTTTTAATCCATGTATCAGAACAACTCTT-AAGAGTTCTGGCTTTGAAATATGTTTAGAGGAGTTTATAATTCCAAACAGTTCAGATGACATCAGCTCTTCTTTAGAGTCCTCTGAGTTTGCTCAGTTTCCTCATTCCAATGCGGTGGGAACCATTTAGTTAAATTGAAGTCTGTGGTCTTTACGCATAGTCATCCTAAGTTTCTTGCAGATCATGAAACATCAGAGGTCTGCTAAGTCATTGGTTTGTCTCTGTAGATTTTTCTAATCcaagcttgtccag-cc------------------gcagcctgcaaaggctttgaatgtggcccaacacaagttcataaactttctgaaaacattggctgtgcccggtggctcatacctgtaatcccagaactttgggaagccaaggc------------------aggtagatcacctgaggtcaggagtttgagaccagtctgtccaacatggtgaaaccctttctctact-----ta-aaaaa-ttaactgggcatggtgatgggagcctgtaatcccagctacttgggaggctgag
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      3030157 596 -  42888418 ATGACCTGTCCCTTTGACCAGTGTGGGAGGACAGATACTTTGTCATCCCTCTTTTAATCCATGTATCAGAACAACTCTT-AAGAGTTCTGGCTTTGAAATATGTATAGAGGAGTTTATAATTCCAAACAGTTCAGATGACATCAGCCCTTCCTTAGAGTCCTCTGAGTTTGCTCAGCTTCCTCATTCCAATGCGGTGGGAACCATTCAGTTAAATTGATGTTTGTGGTCTTTACACATAGTCATCCTAAGTTTTTTGCAAATCGTGAAACATCAGAGGTCTGCTAAGTCACTAGTTTGTCTCTGTAGATTTCTCTAATTcaagcttgtccaa-ccgcggcctgtaggctgcatgcagcctgcaaaggctttgaatgtggcccaacacaagttcataaactttctgaaaacgttggctgtgcccggtggctcatgcctgtaatcccagaactttgggaggccaaggc------------------agatagatcacctgaggtcaggagttcgagaccagcctgtacaacatggtgaaaccctgtctctacttaaaata-aaaaa-ttaactgggcatgggggcgggagcctgtaatcccagctacttgggaggctgag
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e cerAty1.NW_012001384v1      5111383 540 +   5160157 M
e macNem1.NW_012011056v1      6192706 2842 +   6271500 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=321327.000000
s hg38.chr15_KI270850v1_alt    152549 92 +    430880 gcaggagaatggcttgaactcaggaggcagaggttgcagtgagccaagatggtgccactgcactccggcctgggtgacagagtgaggctcca
s panTro5.chr15              66151796 92 +  83230942 gcaggagaattgcttgaacccaggaggcagaggttgcagtgagccaagattgtgccactgcactgtagcctgggcgacagagcgagactcca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83385668 92 +  99763055 gcaggagaattgcttgaacccaggaggcagaggttgcagtgagccaagattgtgccactgcactgtagcctgggcgacagagcgagactcca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       252064 89 +    378907 gcaggagaattgcttgaacccaggaggcagaggttgcagtgagccaagat-gtgccactg--cctcagcctgggcgacagagcgagactcca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101783820 92 + 121039945 gcaggagaatcacttgaacccaggcggcagaggttgcagtgagccaagatggtgccactgcactccagcctgggtgacagagtgagactcca
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106477123 92 - 171882078 gcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccaggatcatgccactgcactccagcctgggtgacagagtgagactcca
i macFas5.chr7              C 0 I 3
s manLeu1.NW_012105520v1      1075302 92 +   1458659 gcaggagactcgcttgaacccaggaggcagaggttgcagtgagccaggatcatgccactgcactccagcctgggtgacagagtgagactcca
i manLeu1.NW_012105520v1    C 0 M 670
s colAng1.NW_012116021v1       281363 92 +   4111199 gcgggagaattgcttgaacccaggaggcagaggttgcagtgagccaggatcatgccactgcactccatcctgggtgacagagtgagactcca
i colAng1.NW_012116021v1    C 0 I 3
s calJac3.chr10             114051968 85 - 132174527 gcaggagaattgcttgaatccaggaggcag-------agtaagccaagattatactactgcactaaagcctgggcaacagggtgagactctg
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      3030753 92 -  42888418 gcaggagaattgcttgaacccaggaggcagaggttgcagtgagccaagattatgctactgcactacagcctgggcgacagagtgagactctg
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e chlSab2.chr29              20316017 1365 -  24206276 I
e cerAty1.NW_012001384v1      5111383 540 +   5160157 M
e macNem1.NW_012011056v1      6192706 2842 +   6271500 M
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=7560.000000
s hg38.chr15_KI270850v1_alt    152641 6 +    430880 cctcac
s panTro5.chr15              66151888 6 +  83230942 tctcaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83385760 6 +  99763055 tctcaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       252153 6 +    378907 tctcag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101783912 6 + 121039945 tctcaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106477218 4 - 171882078 --ccaa
i macFas5.chr7              I 3 I 3
s colAng1.NW_012116021v1       281458 4 +   4111199 --ccaa
i colAng1.NW_012116021v1    I 3 I 3
s calJac3.chr10             114052053 6 - 132174527 tcttaa
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      3030845 6 -  42888418 tcttgt
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e manLeu1.NW_012105520v1      1075394 670 +   1458659 M
e chlSab2.chr29              20316017 1365 -  24206276 I
e cerAty1.NW_012001384v1      5111383 540 +   5160157 M
e macNem1.NW_012011056v1      6192706 2842 +   6271500 M
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=16012.000000
s hg38.chr15_KI270850v1_alt    152647 12 +    430880 aa-----caaa---caaaaa
s panTro5.chr15              66151894 17 +  83230942 aaacaaacaaa---caaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83385766 13 +  99763055 aa----acaaa---caaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       252159 16 +    378907 aaaca-acaaa---caaaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101783918 12 + 121039945 aa-----caaa---caaaaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106477225 12 - 171882078 -----aacaaa---caaaaa
i macFas5.chr7              I 3 C 0
s chlSab2.chr29              20317382 12 -  24206276 -----AACAAA---Caaaaa
i chlSab2.chr29             I 1365 C 0
s colAng1.NW_012116021v1       281465 12 +   4111199 -----aacaaa---caaaaa
i colAng1.NW_012116021v1    I 3 C 0
s calJac3.chr10             114052059  9 - 132174527 --------aaa---caaaGA
i calJac3.chr10             C 0 I 1515
s aotNan1.NW_018505940v1      3030851 12 -  42888418 --------aaatctcaaatg
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e manLeu1.NW_012105520v1      1075394 670 +   1458659 M
e cerAty1.NW_012001384v1      5111383 540 +   5160157 M
e macNem1.NW_012011056v1      6192706 2842 +   6271500 M
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=60192.000000
s hg38.chr15_KI270850v1_alt    152659 25 +    430880 -att-atgagattttccttttttgcaa
s panTro5.chr15              66151911 25 +  83230942 -act-atgagattttctttttttgcaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83385779 25 +  99763055 -act-atgagattttctttttttgcaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       252175 25 +    378907 -att-atgagattttctttttttgcaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101783930 26 + 121039945 -attaatgagattttctttttttgcaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106477237 25 - 171882078 -att-gtgagattttctttttttgcaa
i macFas5.chr7              C 0 I 4
s chlSab2.chr29              20317394 25 -  24206276 -att-gtgagattttctttttttgcaa
i chlSab2.chr29             C 0 I 9
s colAng1.NW_012116021v1       281477 25 +   4111199 -att-gtgagattttctttttttggaa
i colAng1.NW_012116021v1    C 0 I 3
s aotNan1.NW_018505940v1      3030863 25 -  42888418 cttt-gtttg-tttttgttttttgtaa
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10             114052068 1515 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e manLeu1.NW_012105520v1      1075394 670 +   1458659 M
e cerAty1.NW_012001384v1      5111383 540 +   5160157 M
e macNem1.NW_012011056v1      6192706 2842 +   6271500 M
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=109255.000000
s hg38.chr15_KI270850v1_alt    152684 34 +    430880 -tttttttaaagcttagcagctattattagtgttc
s panTro5.chr15              66151936 34 +  83230942 -tttttttaaagcttatcagctattactagtgtta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83385804 34 +  99763055 -tttttttaaagcttatcagctattactagtgtta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       252200 31 +    378907 --tttattaaagcttatcagctattatta--gtta
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101783956 34 + 121039945 -tttttttaaagcttagcagctattactagtgtta
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106477266 34 - 171882078 -tttttttaaagcttagcggctattattagtgtta
i macFas5.chr7              I 4 C 0
s cerAty1.NW_012001384v1      5111929 34 +   5160157 -tttttttaaagcttagcggctattattagtgtta
i cerAty1.NW_012001384v1    M 540 C 0
s chlSab2.chr29              20317428 34 -  24206276 -tttttttaaagcttagcggctattattagtgtta
i chlSab2.chr29             I 9 C 0
s colAng1.NW_012116021v1       281505 34 +   4111199 -tttttttaaagcttagcggctattattagtgtta
i colAng1.NW_012116021v1    I 3 C 0
s aotNan1.NW_018505940v1      3030888 32 -  42888418 tttttttaaaagcttatcagctat---tagtgtta
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10             114052068 1515 - 132174527 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e manLeu1.NW_012105520v1      1075394 670 +   1458659 M
e macNem1.NW_012011056v1      6192706 2842 +   6271500 M
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=2169500.000000
s hg38.chr15_KI270850v1_alt    152718 542 +    430880 gtgtattttatgtgtggcacaagacaatt---cttcttccagcgtggcccagggaagccagaagattggatcccgctTCTTTAAGTTTTATGGATTAACAAGGGGTTAATTCCTGTATCAGTTTCACTGATGTTTCTTCTGCTTGATGCAGGAACACTTGACAAGTTAGTTAAGGTAGATTGGTCCATAAATTTATAGGTTCTTTCATTCCCATGTCCTAGGCAAGTCTGAGCAGGACCTGGAAAGCTGATTAAAAGGCCAGTGAGCACAGTGAGCTTAA-TTGTAAATTAAATGGATATTTAATACATTAAG-AAGGCACTCAAGCCTTTCAATCTTTCATTTTCATCCATGCTTGCTATTTGAATCTGATGGGCTTGATATTGACCTTGTTCTTCTTGTAAAAATGTTGGTT----ATTGCTGCCTTTCTCAAGCTTGGTTTTCAGTGTGGATTTCTGCAGATAATTTTTGCACCTAAAAGTACAAAGTCATTAAGTGAAGGCAGTCAGGAAGGAAAGAGTGCCCTGAGCCAGGAGGTCTGTTACAGCa
s panTro5.chr15              66151970 544 +  83230942 gtatattttatgtgtggcgcaacacaattattcttcttccagtgtggcccagggaagctacaagattggacGACACTC--TTAATTTTTGTGGATTAACAAGGTGTTAATTCCTGTATAAATTTCACTGATATTTCTTCTGCTTGATGCAGGAACACTTGACAAGTTAGTTAAGGTAGATTGGTCCATAAATTTATAGGTTCTTTCATTCCCATGTCCTAGGCAAGTCTGAGCAGGCCCTGGAAAGCTGATTAAAAGGCCAGTGAGCACAGTGAGGTTAA-TTTTAAATTAAATGGATATTTAATACATTGAG-AAGATACTCAAGCCTTTCAATCTTTCATTTTCATCCATGCTTGCTGTTTGAATCTGATGGGCTTGAAATTGACCTTGTTCTTCT---AAAAATGTTGGTTGGTTATTGCTGCCTTTCTCAAGCTTGGTTTTCAATGTGGATTTCTGCAGATAATTTTTGCACCTAAAAGTACAAAGTCATTTAGTGAAGACAGTCAGGAAGGAAAGAGTACGCTGAGCCAGGAGGTCTGTTATAGCG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83385838 540 +  99763055 gtatattttatgtgtggcgcaacacaattattcttcttccagtgtggcccagggaagctacaagattggacGACACTC--TTAATTTTTGTGGATTAACAAGGTGTTAATTCCTGTATAAATTTCACTGATATTTCTTCTGCTTGATGTAGGAACACTTGACAAGTTAGTTAAGGTAGATTGGTCCATAAATTTATAGGTTCTTTCATTCCCATGTCCTAGGCAAGTCTGAGCAGGCCCTGGAAAGCTGATTAAAAGGCCAGTGAGCACAGTGAGGTTAA-TTTTAAATTAAATGGATATTTAATACATTGAG-AAGATACTCAAGCCTTTCAATCTTTCATTTTCATCCATGCTTGCTGTTTGAATCTGATGGGCTTGAAATTGACTTTGTTCTTCT---AAAAATGTTGGTTGGTTATTGCTGCCTTTCTCAAGCTTCGTTTTCAATGTGGATTTCTGCAGATAATTTTTGCACCTAAAAGTACAAAGTCATTTAGTGAAGA----CAGGAAGGAAAGAGTACGCTGAGCCAGGAGGTCTGTTATAGCG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       252231 530 +    378907 gtatattttatgtgtggcacaa-acaattcttcttc-tccag-gtggcccagggaagcca-aagattggacg-cactcctTTAATTTT--TGGATTAACAAGG-GTTAATTCCTGTAT-AATTTCACTGAT-TTTCTTCTGCTTGATGCAGGAACACTTGACAAGTTAGTTAAGGTAGATTGGTCCATAAATTTATAGGTTCTTTCATTCCCATGTCCTAGGCAAGTCTGAGCAGG-CCTGGAAAGCTGATTAAAAGGCCAGTGAGCACAGTGAGGTTAA-TT-TAAATTAAATGGATATTTAATACATTGAG-AAGATACTCAAGCCTTTCAATCTTTCATTTTCATCCATGCTTGCTGTTTGAATCTGATGGCCTTGAAATTGACCTTGTTCTTCT---AAAAATGTTGGTT----ATTGCTACCTTTCTCAAGCTTGGTTTTCAGTGTGGATTTCTGCAGATAATTTTTGCACCTAAAAGTACAAAGTCATTAAGTGAAGGCAGTCAGGAAGGAAAGAGTACCCTGAGCCAGGAGGTCTGTTATAGCG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101783990 545 + 121039945 gtgtattttatgtgtggcacaacacaattcttcttcttccagtgtggcccagggaagccagaagattggataccactCCTTTAATTTTTATGGATTAACAAGGTGTTAATTCCTGTATCAGTTTCACTGATGTTTCTTCTACTTGATGCAGGAACACTTGACAAGTTAGTTAAGGTAGACTGGTCCATAAATTTATAGGTGCTTTCATTCCCATGTCCTAGGCAAGTCTGAGCAGGACCTGGAAAGCTGATTAAAAGGCCAGTGAACACAGTGAGCTTAA-TTGTAAATTAAATAGATATGTAATACATTGAG-AAGGCACTCAGGCCTTTCAATCTTTCATTTTCATCCATGCTTGCTATTTGAATCTGATGGGCTTGAAATTGATCTTGTTCTTCTTGTAAAAACGTTGGTT----ATTGCTGTCTTTCCCAAGTTTGGTTTTCAGTGTGGATTTCTGCAGATAATATTTGCACCTAAAAGTACAAAGTCATTAAGTGACGGCAGTCAGGAAGGAAAGAGTACCCTGAGCCAGGAGGTCTGTTGTAGCG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106477300 541 - 171882078 gtgtattttatgtgtggtgcaagacagtt------cttccagtgtggcccagggaagccagaagattggataccgctCCTTTAATTTTTATGGATTAACAAGGTGTTAATTCCTGTATCAGTTTCACTGATATTTCTTCTGCTTGATGCAGGAACACTTGACAAGTTAGTTAAGGTAGATTGGTCCATACATTTATGGGTTCTTTCATTCCCATGTCCCAGGCAAGTCTGAGCAGGACCTGGAAAGCTGATTAAAAGGCCAGTGAGCACAGTGAGCTTAA-TTGTAAATTAAATGGATATTTAATACATTGAT-AAGGTCCTCAAACCTTTCAATCTTTCATTTTCATCCATGCTTGCTATTTGAATCTGATGGGCTTGAAATTGAC--TGTTCTTCTTGTAAAAATGTTGGTTGGTTATTGCTGCCTTTCGCAAGCTTGGTTTTCAGTGTGGATTTCTGCAGATAATTTTTACACCTAAAGTTACAAAGTCATTAAGTGAAGGCAGTCAGGAAGGAAAGAGTACCCTGAGCCACGAGGTCTGTTATAAAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5111963 539 +   5160157 gtgtattttatgtgtggtgcaagacagtt------cttccagtgtggcccagggaag-cagaagattggatacAGCTCCTTTAATTTTTATGGATTAACAAGGTGTTAATTCCTGTATCAGTTTCACTGATATTTCTTCTGCTTGATGCAGGAACACTTGACAAGTTAGTTAAGGTAGATTGGTCCATAAATTTATGGGTTCTTTCATTTCCATGTCCTACGCAAGTCTGAGCAGGACCTGGAAAGCTGATTAAAAGGCCAGTGAGCACAGTGAGCTTAA-TTGTAAATTAAATGGATATTTAATACATCGAG-AAGGTACTCAAACCTTTCAATCTTTCATTTTCATCCATGCTTGCTATTTGAATCTGATGGGCTTGAAATTGAC--TGTTCTTCTTGTAAAAATGTTGGTTGGTTATTGCTGCCTTTCTCAAGCTTGGTTTTCAGTGTGGATTTCTGCAGATAATTTTTGCAGCAAAAAGTACAAAGTCACTAAGTGAAGGCAGTAAGGAAGGAAAGAGTACCCTGAG-CAGGAGGTCTGCTATAGCA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20317462 540 -  24206276 gtgtattttatgtgtggtgcaagacagtt------cttccagtgtggccaagggaagccagacgattggataccactCCTTTAATTTTTATGGATTAACAAGGTGTTAATTCCTGTATCAGTTTCACTGATATTTCTTCTGCTTGATGCAGGAACACTTGACTAGTTAGTTAAGGTAGATTGGTCCATACATTTATGGGTTCTTTCATTTCCATGTCCTAGGCAAGTCTGAGCAGGACCTGGAAAGCTGATTAAAAGGCCAGTGAGCACAGTGAGCTTAA-TTGTAAATTAAATGGATATTTAATACATTGAT-AAGGTCCTCAAACCTTTCAATCTTTCATTTTCATCCATGCTTACTGTTTGAATCTGATGGGCTTGAAATTGAC--TGTTCTTCTTGTAAAAATGTTGGTTGGTTATTGCTGCCTTTTTCAAGCTTGGTTTTCAGTGTGGATTTCTGCAGATAATTTTTGCAGCAAAAAGTACAAAGTCATTAAGTGAAGGCAGTAAGGAAGGAAAGAGTACCCTGAG-CAGGAGGTCTGTTACAGCG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       281539 532 +   4111199 gtgtattttatgtgtggtgcaagttagtt------cttccagtgtggcccagggaagcca--------gaTACTGCTCCTTTAATTTTTATGGCTTAACAAGGTGTTAATTCCTGTATCAGTTTCACTGATATTTCTTCTGCTTGATGCAGGAACACTTGACAAGTTAGTTAAGGTAGATTGGTCCATAAATTTATGGGTTCTTTCATTTCCATGTCCTACGCAAGTCTGAGCAGGACCTGGAAAGCTGATTAAAAGGCCAGTGA-CACAGTGAGCTTAA-TTGTAAATTACATGGATATTTAATACATTGAG-AAAGTCCTCAAACCTTTCAATCTTTCATTTTCATCCATGCTTGCTATTTGAATCTGATGGGCTTGAAATGGAC--TGTTCTTCTTGTAAAAATGTTGGTTGGTTATTGCTGCCTTTCTCAAGCTTGGTTTTCAGTGTGGATTTCTGCAGATAATTTTTGCACCAAAAAGTACAAAGTCATTAAGTGAAAGCAGTCAGGAAGGAAAGAGTACCCTGAGCCAGGAGGTCTGCTATAGCG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114053583 489 - 132174527 gtgtattttttatgtggccaaagaca---attctttttccagtgtggcccagggaagccagaagattggacacTGCTCCTTTAATT----------------------------------------------TTTCTTCTGCTTGATGCAGGAACACTTGACAAGTTAGTTAAGGTAGATTAGTTCATAAATTCATAGGTTCTTTCATTCCTATGTCATAGGCAAGTCTGAGCAGGATCTGGAAAGCTCATTCAAAGGC---------CAGTGAGCTTAA-TTTTAAATTAAATGGATATTTAATACATTGAGAAAGGTACTCAAGCTTTTCGATCTTTCTTTTTCATTCATGCTTGCTGTTTGAATCTGATGGGCTTGAAATTGAC--TGTTCTTTTTCTAAAAATGTT-TTTTGTTATTGCTACGTTTCTCAAGCTTGGGTTTCAGTGTGGATTCCTGCAGATAATTTTTGCACCTTAAAGTACAGAGTCATTAAGTGAAGGCAGTTAGAAAGGAAAGAGTACTCCTAGCCAGGAGGTCTGTTATGGGG
i calJac3.chr10             I 1515 C 0
s aotNan1.NW_018505940v1      3030920 501 -  42888418 gtgtattttttatatggccacagacacttcttctttttccagtgtggcccagggaagccagaagatgggacacTGCTCCTTTAATT----------------------------------------------TTTCTTCTGCTTGATGCAGGAACACTTAACAAGTTAGTTAAGGTAGATTGGTTCATAAATTTATAGGTTCTTTCATTCCTATGTCATAGGCAAGTCTGAGCAGGATCTGGAAAGCTCGTTCAAAGGCCATTGAGCACAGTGAGCTTAATTTTTAAATTAAATGGGTATTTAATACATTGAG-AAGGTACTCAAGCTTTTCAATCTTTCTTTTTCATTCATGCTTGCTGTTTGAATCTGATGGGCTTGAAATTGAC--T-TTGTTCTTCTAAAAATGTTGGTTTGTTATTGCTACCTTTCTCAAGCTTGGTTTTCAGTGTGGATTTCTGCAGATAATTTTTGCACCTAAAAGCACAGAGTCATTAAGTGAAGGCAGTTAGAAAGGAAGGAGTACCCCTAGCCAGGAGGTCTGTTATGGGG
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e manLeu1.NW_012105520v1      1075394 670 +   1458659 M
e macNem1.NW_012011056v1      6192706 2842 +   6271500 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=2608776.000000
s hg38.chr15_KI270850v1_alt    153260 508 +    430880 catggggtggacaagaaaatgaatggacatgggc------atggaGGTGGTTCAGTCAGTGTGGGAAGGCCACCTGCTTGTCAGCTTTCTACTGCGTTGTCCAGCAGAACACGTTGAAGCTTGGGGCCTGCAACTCGTGTAGAGATGA-TTGCATTTAGGAGGCTGAGGTAGATTTTTTCCCTCTTAAGTGTGTGCTCACTGCTTTTTGGCGAAGTCTTGACCCGAGACATACACAGCTTGA-----------TCTGTGAGGATTTTAACATCGAGATGGTTCTGTTATTTGAGTTAGGCATGGCTAGGCTACCAAGGCATTGCTTTTCAGTCCAAACATTTGGTCATTTCAATTTATTGTTAGTGAGGTTTTTGCGATTTGTTAGAACACAGAGTTTGGGATTTTGTCTGTTTTTT--G-----------------CATGTGTGAATGACACTTGATATTGTTGTTTATATTGCTGGTTAGTATGTGCCTTCATTTACCTATTGTGAGTAAGAAACTTCCTCAGATCAAATTATAGTGA-----------------------AGTCG
s panTro5.chr15              66152514 505 +  83230942 CATGGGGTGGACCAGAGAATGAATGGGCATGGGC------ATGGAGGTGGTTCAGTCAGTGTGGGAAAGCCACCTGCTTGTCAGCTTTCTACTGCGTTGTCCAGCAGAACACATTGAAGCTTGGGGCCTGCAACTGGTGTGGAGATGA-TTGCATTTAGGAGGCTGATGTAGATTTTTTTCCCTCTAAGTGTGTGTTAACTGCCTTTTGGTGAAGTCTTGATCCGAGACATACACAACTTGA-----------TCTGTGAGGATTGTAATATGGAGATGGTTCTGTTATTTCAGTTAGGCATGGTTACGCTACCAAGGCATTGCTTTTCAGTCCAAACAGTTGGTCATTTCACTTT-----TAGTGAGGCTTTTGTGATTTGTTAGAACACAAAGTTTGTTATTTTGTCTGTTTTTTTTG-----------------CATGTATGAATGACACTTTATACTGTTGTTTATTTTGCTGGTTAGTATGTGCCTTCATTTACCTATTGTGAGTAAGAAACTTCCTCAGATGAAATTATAGTGA-----------------------AGTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83386378 505 +  99763055 CATGGGGTGGACCAGAGAATGAATGGGCATGGGC------ATGGAGGTGGTTCAGTCAGTGTGGGAAAGCCACCTGCTTGTCAGCTTTCTACTGCGTTGTCCAGCAGAACACATTGAAGCTTGGGGCCTGCAACTGGTGTGGAGATGA-TTGCATTTAGGAGGCTGATGTAGATTTCTTTCCCTCTAAGTGTGTGTTAACTGCCTTTTGGTGAAGTCTTGATCCGAGACATACACAACTTGA-----------TCTGTGAGGATTGTAATATGGAGATGGTTCTGTTATTTCAGTTAGGCATGGTTACGCTACCAAGGCATTGCTTTTCAGTCCAAACAGTTGGTCATTTCACTTT-----TAGTGAGGCTTTTGTGATTTGTTAGAACACAAAGTTTGTTATTTTGTCTGTTTTTTTTG-----------------CATGTATGAATGACACTTTATACTGTTGTTTATTTTGCTGGTTAGTATGTGCCTTCATTTACCTATTGTGAGTAAGAAACTTCCTCAGATGAAATTATAGTGA-----------------------AGTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       252761 492 +    378907 CATGGGGTGGAC--AGAAATGAATGG-CATGGGC------ATGGAGGTGGTTCAGTCAGTGTGGGAAGGCCACCTGCTTGTCAGCTTTCTACTGCGCTGTCCAGCAGAACACATTGAAGCTTGGGG-CTGCAACTCGTGT-GAGATGA-TTGCATTTAGGAGGCTGATGTAGATTT-TTTCCCTCTAAGTGTGTGTTAACTGCCTTTTGGTGAAGTCTTGATCCGAGACATACACA-CTTGA-----------TCTGTGAGGATTGTAATATGGAGATGGTTCTGTTATTTCAGTTAGGCATGGCTAGGCTACCAAGGCATTGCTTTTCAGTCCAAACA-TTGGTCATTTCAATTT-----TAGTGAGGCTTTTGTGATTTGTTAGAACACA-AGTTTGTTATTTTGTCTGTTTTTT--G-----------------CATGTGTGAATGACACTTGATATTGTTGTTTAT-TTGCTGGTTAGTATGTGCCTTCATTTACCTATTGTGAGTAAGAAACTTCCTCAGAT-AAATTACAGTAA-----------------------AGTCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101784535 508 + 121039945 CATGGGGTGGACCAGAGAATGAATGGGCATGGGC------ATGGAGGTGGTTCAGTCAGTGTGGGAAAGCCACCTGCTTGTCAGCTTTCTACTACGTTGTCCAGCAGAACACACTGAAGCTTGGGACCTGCAACTGGTGTGGAGATGA-TTGCATTTAGGAGGCTGATGTAGATTTTTTCCCTCTTAAGTGTGTGCTCACTGCTTTTTGGTGAAGTCTTGATCCGAGACATACACAGCTTGA-----------TCTGTGAGGATTTTAACATCGAGATGGTTCTGTTATTTGAGTTAGGCATGGCTGGGCTACCAAGGCATTACTTTTCAGTCCAAACATTTGGTCATTTCAATGTATTGTTAGTGAGGCTTTTGTGATTTGTTAGAACACAGAGTTTGGGATTTTGTCTGTTTTTT--G-----------------CGTATATGAATGACACTTTATACTGTTGTTGATATTGCTGGTTAGTATGTGCCTTCATTTACCTATTGTGAGTAAGAAACTTCCTCAGATTAAATTATAGTGA-----------------------AGTCA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106477841 542 - 171882078 CATGGGGTGGACCAGAGAATGAATGGGCATGGGC------CCGGAGGTGGTTCAGTCAGTGTGGGAAAGCCACCTGCTTGTCAGCTTTCTACTGCGTTGTCCAGCAGAACACATTGAAGCTTGGGACCTGCAACTGGTGTGGAGGTGA-TTGCATTTAGGAGGCTGATGTAGATTTTTTCCCTCTTAAGTGTGTGTTAACTGCTTTTTGGCAAAGTCTTGATCTGAGACATACACAGCTTGATCTGTGGCAGATCTGTGAGGATTTTAATATCGAGAGGGTTCTGTTATTTGAGTTAGGCATAGCTAGGCTACCAAGGCATTGCTTTTCAGTCCAAACATTTGGTCATTTCAATTTATTGTTAATGAGGCTTTTGTGATTTGTTAGAACACAGAGTTTGGGATTTTGTCTGTTTTTT--G-----------------CATGTATGAATGACACTTTATACTGTCGTTTTTATTGCTGGTTAGTATGTGTCTTCATTTACCTATTGTGAGTAAGAAACTTCCTCAGATCAAATTATAGAAACAGAACCAAGTGATTATAGAAACAGTCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5112502 542 +   5160157 CATGGGGTGGACCAGAGAATGAATGGGCATGGGC------CCGGAGGTGGTTCAGTCAGTGTGGGAAAGCCAcctccttgtcagctttctactgcgttgtccagcagaacacattgaaGCTTGGGACCTGCAACTGGTGTGGAGATGA-TTGCATTTAGGAGGCTGATGTAGATTTTTTCCCTCTTAAGTGTGTGTTAACTGCTTTTTGGCAAAGTCTTGATCTGAGACATACACAGCTTGATCTGTGGCAGATCTGTGAGGATTTTAATATCGAGAGGGTTCTGTTATTTGAGTTGGGCATGACTAGGCTACCAAGGCATTGCTTTTCAGTCCAAACATTTGGTCATATCAGTTTATTGTTAGTGAGGCTTTTGTGATTTGTTAGAACACAGAGTTTGGGATTTTGTCTGTTTTTT--G-----------------CATGTATGAATGACACTTTATACTGTCGCTTTTATTGCTGGTTAGTATGTGTCTTCATTTACCTATTGTGAGTAAGAAACTTCCTCAGATCAAATTATAGAAACAGAACCAAGTGACTATAGAAACAGTCA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20318002 542 -  24206276 CATGGGGTGGACCAGAGAATGAATGGGCATGAGC------ATGGAGGTGGTTCAGTCAGTGTGGGAAAGCCACCTGCTTGTCAGCTTTCTACTGCGTTGTCCAGCAGAACACATTGAAGCTTGGGACCTGCAACTGGTGTGGAGATGA-TTGCATTTAGGAGGCTGATGTAGATTTTTTCCCTCTTAAGTGTGTGTTAACTGCTTTTTGGCAAAGTCTTGATCTGAGACATACACAGCTTGATCTGTGGCAGGTCTGTGAGGATTTTAATATCGAGAGGGTTCTGTTATTTGAGTTAGGCATAGCTAGGCTACCAAGGCATTGCTTTTCAGTCCAAACATTTGGTCATTTCAATTTGTTGTTAGTGAGGCTTTTGTGATTTGTTAGAACACAGAGTTTGGGATTTTGTCTGTTTTTT--G-----------------CATGTATGAATGACACTTTATACTGTCCCTTATATTGCTGGTTAGTATGTGCCTTCATTTACCTATTGTGAGTAAGAAACTTCCTTAGATCAAATTATAGAAACAGAACCAAGTGACTATAGAAACAGTCA
i chlSab2.chr29             C 0 I 2
s manLeu1.NW_012105520v1      1076084 542 +   1458659 CATGGGGTGGACCAGAGAATGAATGGGCATGAGC------ATGGAGGTGGTTCAGTCAGTGTGGGAAAGCCAcctgcttgtcagctttctactgcgttgtccagcagaacacattgaaGCTTCGGACCTGCAACTGGTGTGGAGGTGA-TTGCATTTAGGAGGCTGATGTAGATTTTTTCCCTCTTAAGCGTGTGTTAACTGCTTTTTGGCAAAGTCTTGATCTGAGACATACACAGCTTGATCTGTGGCAGATCTGTGAGGATTTTAATATCGAGAGGGTTCTGTTATTTGAGTTAGGCATAGCTAGGCTACCAAGGCATTGCTTTTCAGTCCAAACATTTGGTCATTTCAATTTATTGTTAGTGAGGCTTTTGTGACTTGTTAGAACACGGAGTTTGGGATTTTGTCTGTTTTTT--G-----------------CATGTATGAATGACACTTTATACTGTCGCTTTTATTGCTGGTTAGTACATGTCTTCATTTACCTATTGTGAGTAAGAAACTTCCTCAGATCAAATTATAGAAGCAGAACCAAGTGACTATAGAAACAGTCA
i manLeu1.NW_012105520v1    M 670 I 2
s colAng1.NW_012116021v1       282071 542 +   4111199 CATGGGGTGGACCGGAGAATGAATGGGCATGGGC------CCGGAGGTGGTTCAGTCAGCGTGGGAAAGCCACCTGCTTGTCAGCTTTCTACTGCGTTGTTCAGCAGAACACACTGAAGCTTGGGACCTGCAACTGGTGTGGAGATGA-TTGCATTTAGGAGGCTGATGTAGATTTTTTCCCTCTTAAGTGTATGTTAACTGCTTTTTGGCAAAGTCTTGATCTGAGACATACACAGCTTGATCTGTGGCAGATCTGTGAGGATTTTAATATCGAGAGGGTTCTGTTATTTGAGTTAGGCATGACTAGGCTACCAAGGCATTGCTTTTCAGTCCAAACATTTGGTCATTTCAATTTATTGTTAGTGAGGCTTTTGTGATTTGTTAAAACACAGAGTTTGGGATTTTGTCTGTTTTTT--G-----------------CATGTATGAATGACACTTTATACTGCTGCTTATATTGCTGGTTAGTATGTGCCTTCATTTACCTATTGTGAGTAAGAAACTTCCTCAGATCAAATTATAGAAACAGAACCAAGTGACTATAGAAACAGTCA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114054072 529 - 132174527 TATCGAGTGAACCAGAAAACGAATGGGCATGGACACGAGGATGGAGTTGGTTCAGTCAGTGTAAGAAAGCCACCTGTGTGTCACCTTCCTACTGTGTTGTTCAGCAGAACACATTCTAGGTTGGGGCTTGCGACTGGTGTGGAGATTATTTGCATTTAGGAGGCTGATGTAGATTATTTTCCCTCTAAGTGTGTGTTAACTGCTCTTTGGCCAAGTCTTGATCTGAGACATACACAGCTTGATCTGTGGCAGACCTGTGAGGATTTTAATAATAAGAGAGTTCTGTTATTTGAGTTATGCATA-----GCTACCAAGGCATTGCTTTTCATTCCAAACATTTGGTCATTTCAATTTATTGTTAGTGAGGCTTTTGTGATTTGTTAGAACACACAGTTTGGGATTTTGTCTGtttttt--tttttttttttttttttCCATGTCTGAATGATAC---------ATGTTTGTATTGCTGGTCAGTATATGCTTTCATTTACCTATTGTGAATAAGAAACTTCTTCAGATCAAATTATAGTGA-----------------------AGTCA
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1      3031421 530 -  42888418 TATGGAGTGAACCAGAAAATGAATGGGCATGGACATGAGGATGGAGTTGGTTCAGTCAGTGTGAGAAAGCCACCTGTGTGTCACCTTCCTACTGCATTGTCCAGCAGAACACATTGAAGGTTGGGGCTTACAACTGGTGTGGAGATTATTTGCATTTAGGGGGCTCATGTAGATTATTTTCCCTCTAAGTGTGTGTGAACTGCTTTTTGGCCAAGTCTTGATCTGAGACATACACAGCTTGATCTGTGGCAGACCTGTGAGGATTTCAATATAAAGAGGGTTCTGTTATTTGAGCTATGCACA-----GCTACCAAGGCATTGCTTTTCATTCCAAACATTTGGTCATTTCAATTTATTGTTAGTGAGGCTTTTGTGATTTGTTGGAACACAAAGTTTGGGAttttgtctgtttttt--tttttttttt--------CATGTATGAATGACATTTTATACTGTTGTTTGTATTGCTGGTCAGTATGTGTCTTCATTTGCCTATTGTGAATAAGAAACTTCCTCAGATCAAATTATAATGA-----------------------AGTCA
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e macNem1.NW_012011056v1      6192706 2842 +   6271500 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=848211.000000
s hg38.chr15_KI270850v1_alt    153768 140 +    430880 CTTGGTTCTGTTTCTCTGACTCTTAAG--------------------------------------------------AGGATGAGATCACTTTATACACAAACTCAAGCTGTTTGGTAAAGGACCTACCATTCTGAGCATTCATAGCCTAGATGAAGTCCTGGTCCAATCACC-AAGTTAAACTTTTAAAA
s panTro5.chr15              66153019 140 +  83230942 CTTGCTTCTGTTTCTCTGACTCTTAAG--------------------------------------------------AGGATGAGATCACTTTATACTCAAACTCAGGGTGTTTGGTAAAGGACCTACCATTCTGAGCATTTATAGCCTAGATGAAGTCCTGGTCCAATCACC-AAGTTAAACTTTTAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83386883 139 +  99763055 CTTGCTTCTGTTTCTCTGACTCTTAAG--------------------------------------------------AGGTTGAGATCACTTTATACTCAAACTCAGGGTGTTTGGTAAAGGACCTACCATTCTGAGCATTTATAGCCTAGATGAAGTCCTGGTCCAATCACC-AAGTTAAAC-TTTAAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       253253 139 +    378907 CTTGGTTCTGTTTCTCTGACTCTTAAG--------------------------------------------------AGGTTGAGATCACTTTATACACAAACTCAGG-TGTTTGGTAAAGGACCTACCATTCTGAGCATTCATAGCCTAGATGAAGTCCTGGTCCAATCACC-AAGTTAAACTTTTAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101785043 140 + 121039945 CTTGGTTCTGTTTCTCTGACTCTTAAG--------------------------------------------------AGCATGAGATCACTTTATACTCAAACTCAGGGTGTTTGGTAAAGGACCTACCATTCTGAGCGTTTAGAGCCTAGATGAGGTCCTGGTCCAATCACC-AAGTGAAACTTTTAAGA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106478383 140 - 171882078 CCTGGTTCTGTTTCTCTGACTCTTAAG--------------------------------------------------AGGATGAGATCACTTTATACTCTAATTCAGGATGTTTGGTAAAGGACCTACCATTGTGAGCATTTATAGCCTAGATGAAGTCCTGGCCCAATCTCC-AAGTTCAACTTTTAAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6195550 140 +   6271500 CTTGGTTCTGTTTCTCTGACTCTTAAG--------------------------------------------------AGGATGGGATCACTTTATACTCTAATTCAGGGTGTTTGGTAAAGGACCTACCATTGTGAGCATTTATAGCCTAGATGAAGTCCTGGCCCAATCTCC-AAGTTCAACTTTTAAGA
i macNem1.NW_012011056v1    M 2842 C 0
s cerAty1.NW_012001384v1      5113044 140 +   5160157 CTTGGTTCTGTTTCTCTGACTCTTAAG--------------------------------------------------AGGATGAGATCACTTTATACTCTAATTCAGGATGTTTGGTAAAGGACCTACCATTGTGAGCATTTATAGCCTAGATGAAGTCCTGGCCCAATCTCC-AAGTTCAACTTTTAAGA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20318546 140 -  24206276 CTTGGTTCTGTTTCTCTGACTCTTAAG--------------------------------------------------AGGATGAGATCACTTTATACTCTAATTCAGGGTGTTTGGTGAAGGACCTACCATTGTGAGCATTTATAGCCTAGATGAAGTCCTGGCCCAATCTCC-AAGTTCAACTTTTAAGA
i chlSab2.chr29             I 2 C 0
s manLeu1.NW_012105520v1      1076628 140 +   1458659 CTTGGTTCTGTTTCTCTGACTCTTAAG--------------------------------------------------AGGATGAGATCACTTTATACTCTAATTCAGGGTGTTTGGTAAAGGACCTACCATTGTGAGCATTTATAGCCTAGATGAAGTCCTGGCCCAATCTCC-AAGTTCAACTTTTAAGA
i manLeu1.NW_012105520v1    I 2 C 0
s colAng1.NW_012116021v1       282613 190 +   4111199 CTTGGTTCTGTTTCTCTGACTCTTTAATATGTTTCTTATGTTTAATATGTTTCTTTAATATGTTTCTCTGACTCTTTAGTATGAGATCACTTTATACTCTAATTCAGGGTGTTTGGTAAAGGACCTACCATTATGAGCATTTATAGCCTAAATGAAGTCCTGGCCCAATCTCC-AAGTTCAACTTTTAAGA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114054601 138 - 132174527 CTTTGGTCTGTTTCTCTGACTCTTAAG--------------------------------------------------AGGACGAAATCACTTTATACTCAAATTCAGGGTAGTTGGT-AAGGACCTACCATTCAGAGCATTTATAGCCTAGTTGAAGTCCT-GTCAAATCACC-AAGTTAAACTTTTAAGA
i calJac3.chr10             C 0 N 0
s aotNan1.NW_018505940v1      3031951 141 -  42888418 CTTTGGTCTGTTTCTCTGACTCTTAAG--------------------------------------------------AGGATGAAATAACTTTATACTCAAATTCAGGGTACTTGGTAAAGGACCTACCATTCGGAGCATTTATAGCCTAGATGAAGTCCTGGTCAAATCACCAAAGTTAAACTTTTAAGA
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=4090365.000000
s hg38.chr15_KI270850v1_alt    153908 755 +    430880 AACATGCTGTTCTTAATGTTCAGGAATTCAACCCTGGAAGCCTTCTCTAAATCTTAATGAGAGTTTTATGAGAATTCATTTAGTGAAAAT---ATCTATCAGGGAATCCGGCTATTAACTTTGAGGAGGGTCATGCCTTTTAGTGGTTAGAGAGGCAAGCTGTAGCCTCCCTTCTCAGAGAAGGGGAATTGAGGAAGAGGGTTCTAGTGGTCCCTTGCAATCCTCCCCTCACTTTCCAGGTTCCCTAGTAAGACCGGAAGAAGTCCCTGAGTAAACAGCATTTTGTGAGTTTGAGGGACTATGTAAAAATG-TAAGTGAACATACAATGGTTTTGCTTTGATAACTGTTTTAAATATCCTGTTGGTTGTTGAAACTTCTG-TGACGGTGAAGCCTTTTTTGTCTTTATTTTTCAATCGGAAGATCTTTCTTCCCCACTTGAAAAGATTGAGTCTGGGGTCAATCCCTGACCCCGCTTCCTTCCTAAATCTCTTAGTGTATAGCATACAGCTGGGCATATGGTAATCTCAGGCACGGGATTGTACTCATAGAGCTATGCTTGACACCTAGGTCTTTAGATGGCTTCTATATTTTTGATGACAACTTTTAATTTTATTCTC----ATTTATTCCATTTCTGTTTCAGTGTCCTGGGTCATGAAACTTAATCCACAACAAGCTCCCTTATATGCGAGTAAATCATACGATTTC-------------------------TTTTCATTTTGTATTTATTTGTTCTGTTTACTTGTTATAATAAGC-CACACTCTC
s panTro5.chr15              66153159 753 +  83230942 A-CATGCTATTCTTAATGTTCAGGAATTCAACCCTGGAAGGCTTCTCTAAATCTTAATGAGATTTTT-TGAGAATTCATTTAGTGAACAT---AAAAATCAGGGAATCCAGCTATTAACTTTGAGGAGGGTCATGCCTTTTAGTGGTTAGAGAGGCAAGCTGTAGCCTCCCTTCTCAGAGAAGGGGAATTGAGGAAGAGAGTTCTAGTGGTCCCTTGCAATCCTTCCCTCGCTTTCCAGGTTCCCTAGTAAGACTGGAAGAAGTCCCTGAGCAAACAGCATTTTGTGAGTTTGAGGGACTGTGTAAAAATG-TAAGTGAACATACAATGGTTTTGCTTTGATAACTGTTTTAAATATCCTGTTGGTTGTTGAAACTTCTG-TGACAGTGAAGCCTTTTTTGTCTTTATTTTTCAATCGGAAGATCTTTCTTCCCCACTTGAAAAGATTGAGTCTGGGGTCAATCCCTGACCCCGCTTCCTTCCTAAATCTCTTAGTGTATAGCGTACAGCTGGGCATATGGTAATCTTGGGCACGGGATTGTACTCACAGAGCTATGCTTGACACCCAGGACTTTAGGTGGCTTATATATTTTCTGTGACAACTTTTAATTTTATTCTC----ATTTATTCCATTTCTGTTTCAGTGTCCTGGGTCATGAAACTTAATCCACAACAAGCTCCCTTATATGTGAGTAAATCATGAGATTTC-------------------------TTATTGTTTTGTGTTTATCTGTTCTGTTTACTTGTTATAATAAGC-CACACTCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83387022 752 +  99763055 A-CATGCTATTCTTAATGTTCAGGAATTCAACCCTGGAAGCCTTCTCTAAATCTTAATGAGATTTTT-TGAGAATTCATTTAGTGAACAT---AAAAATCAGGGAATCCAGCTATTAAC-TTGAGGAGGGTGATGCCTTTTAGTGGTTAGAGAGGCAAGCTGTAGCCTCCCTTCTCAGAGAAGGGGAATTGAGGAAGAGAGTTCTAGTGGTCCCTTGCAATCCTCCCCTCACTTTCCAGGTTCCCTAGTAAGACTGGAAGAAGTCCCTGAGCAAACAGCATTTTGTGAGTTTGAGGGACTGTGTAAAAATG-TAAGTGAACATACAATGGTTTTGCTTTGATAACTGTTTTAAATATCCTGTTGGTTGTTGAAACTTCTG-TGACAGTGAAGCCTTTTTTGTCTTTATTTTTCAATCGGAAGATCTTTCTTCCCCACTTGAAAAGATTGAGTCTGGGGTCAATCCCTGACCCCGCTTCCTTCCTAAATCTCTTAGTGTATAGCGTACAGCTGGGCATATGGTAATCTTGGGCACGGGATTGTACTCACAGAGCTATGCTTGACACCCAGGACTTTAGGTGGCTTATATATTTTCTGTGACAACTTTTAATTTTATTCTC----ATTTATTCCATTTCTGTTTCAGTGTCCTGGGTCATGAAACTTAATCCACAACAAGCTCCCTTATATGTGAGTAAATCATGAGATTTC-------------------------TTATTATTTTGTATTTATCTGTTCTGTTTACTTGTTATAATAAGC-CACACTCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       253392 748 +    378907 A-CATGCT-TTCTTAATGTTCAGGAATTCAACCCTGGAAGCCTTCTCTAAATCTTAATGAGATTTTA-TGAGAATTCATTTAGTGAA-AT---AAC-ATCAGGGAATCCAGCTATTAACTTTGAGGAGGGTCATGCCTTTTAGTGGTTAGAGAGGCAAGCTGTAGCCTCCCTTCTCAGAGAAGGGGAATTGAGGAAGAGAGTTCTAGTGGTCCCTTGCAATCCTCCCCTCACTTTCCAGGTTCCCTAGTAAGACTGGAAGAAGTCCCTGAGTAAACAGCATTTTGTGAGTTTGAGGGACTATGTAAAAATG-TAAGTGAACATACAATGGTTTTGCTTTGATAACTGTTTTAAATATCCTGTTGGTTGTTGAAACTTCTG-TGACAGTGAAGCCTTTTTTGTCTTTATTTTTCAATCGGAAGATCATTCTTCCCCACTTGAAAAGATTGAGTCTGGGGTCAAT-CCTGACCCCGCTTCCTTCCTAAATCTCTTAGTGTATAGCATACAGCTGGGCATATGGTAATCTCAGGCACGGGATTGTACTCATAGAGCTATGCTTGACACCTAGGACTTTAGGTGGCTTATATATTTTTGATGACAACTTTTAATTTTATTCTC----ATTTATTCCATTTCTGTTTCAGTGTCCTGGGTCATGAAACTTAATCCACAACAAGCTCCCTTATATGCGAGTAAATCATGAGATTTC-------------------------TT-TTATTTTGTATTTATTTGTTCTGTTTACTTGTTATAATAAGC-CACACTCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101785183 752 + 121039945 A-CATGCTATTCTTAACGTTCAGGAATTCAACCCTGGAAGCCTTCTCTAAATCTTAATGAGATTTTTATGAGAATTCATTTAGTGAACAT---AACAATCAGGGAATCCAGCTATTAACTTTGAGGAGGGTCGTGCCTTTTAGTGGTTAGAGAGGCAAGCTGTAGCCTCCCTGCTCAGAGAAGGGGAATTGAGGAAGAGCGTTCTAGTGGTCCCTTGCAATCCTCCCCTTACTTTCCAGGCTCCCTAGTAAGACCGTAAGAAGTCCCTGAGTAAACAGCATTTTGTGAGTTTGAGGGACTATGTAAAAATG-TAAGTGAACATACAGTGGTTTTGCTTGGATAACTGTTTTAAATATCCTGTTGGTTGTTGAAACTTCTG-TGACAGTGAAGC--TTTTTGTCTTTATTTTTCAATTGGAAGATCTTTCTTCCCCACTTGAAAAGATTGAGTCTGGGGTCAATCCCTGACCCCGCTTCCTTCCTAAGTCTCTTAGTGTATAGCATACAGCTGGGCATATCATAATCTCGAGCACGGGATTGTACTCATAGAGCTATGCTTGACACCTAGGACTTTAGGTAGCTTATATATTTTCGATGACAACTTTTAATTTTATTCTC----ATTTATTCCATTTCTGTTTCAGTGTCCTGGGTCATGAAACTTAATCCACAACAAGCTCCCTTATGTGTCAGTAAATCATGAGATTTC-------------------------TTATTATTTTGTATTTATCTGTTCTGTTTACTTGTTATAATAAGC-CACACTCTC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106478523 752 - 171882078 A-CATGCTATTCTTAATGTTCAGGAATTCAACCCTGGAAGCCTTCTCTAAATCTTAATGAGATTTTTATGAGAATTCATTTAGTGAAAATAACAACAATCAGGGAATCCAGGTATTAACTCTGAGGAGGGTCATGCCTTTTAGTGGTTAGAGAGGCAAGCTGTAGCCTCCCTTCTTAGAGAAGGGGAATTGAGGAAGAGATTTCTAGTGG-CCCTTGCAATCCTCCCCTCACTTTCCAGGCTCCCTAGTAAGACTGGAAGAAGTCCCTGAGTAAACAGCGTTTTGTGAGTTTGAGGGACTAGGTAAAAACG-TAAGTGAACATACAATGGTTTTCCTTTGATAAC--TTTTAAATATCCTTTTGGTTGTTGAAACTTCTG-TGACAGTGAAAC--CTTTTGTCCTTATTTTTCAATTGGAAGATCTTTCTGCCCCACTTGAAAAGATTGAGTTTGGGATCAATCCCTGACCCCACTTCCTTCCTGAATCTCTTAGTGTATGGCATACAGCTGGGCATATGGTGAGCTCGGGGACGGGATTGTACTCATAGAGCTATGCTTGACACCTAGGACTTTAGGTGGCTCATGTATTTTTGATGACAACTTTTGATTTTATTCTC----ATTTATTCCATTTCTGTTTCAGTGTCTTGGGTCATGAAACTTAATCCACAACAAGCTCCCTTATATGTGAGCAAATCATGAGATTTC-------------------------TTTTCATTTTGTATTTATCTGTTCTGTTTACTTGTTATAATAAGC-CACACTCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6195690 752 +   6271500 A-CATGCTATTCTTAATGTTCAGGAAGTCAACCCTGGAAGCCTTCTCTAAATCTTAATGGGATTTTTATGAGAATTCATTTAGTGAAAATAACAACAATCAGGGAATCCAGCTATTAACTCTGAGGAGGGTCACGCCTTTTAGTGGTTAGAGAGGCAAGCTGTAGCCTCCCTTCTTAGAGAAGGGGAATTGAGGAAGAGAGTTCTGGTGG-CCCTTGCAATCCTCCCCTCACTTTCCAGGCTCCCTAGTAAGACTGGAAGAAGTCCCTGAGTAAACAGCGTTTTGTGAGTTTGAGGGACTAGGTAAAAACG-TAAGTGAACATACAGTGGTTTTCCTTTGATAAC--TTTTAAATATCCTGTTGGTTGTTGAAACTTCTG-TGACAGTGAAAC--CTTTTGTCCTTATTTTTCAATTGGAAGATCTTTCTGCCCCACTTGAAAAGATTGAGTTTGGGACCAATCCCTGACCCCACTTCCTTCCTGAATCTCTTAGTGTATGGCATACAGCTGGGCATATGGTAAGCTCGGGGACGGGATTGTACTCATAGAGCTATGCTTGACACCTTGGACTTTAGGTGGCTCATGTATTTTTGATGACAACTTTTGATTTTATTCTC----ATTTATTCCATTCCTGTTTCAGTGTCTTGGGTCATGAAACTTAATCCACAACAAGCTCCCTTATATGTGAGCAAATCATGAGATTTC-------------------------TTTTCATTTTGTATTTATCTGTTCTGTTTACTTGTTATAATAAGC-CACACTCTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5113184 755 +   5160157 A-CATGCTATTCTTAATGTTCAGGAATTCAACCCTGGAAGCCTTCTCTAAATCTTAATGAGATTTTTATGAGAATTCATTTAGTGAAAATAACAACAATCAGGGAATCCAGGTATTAACTCTGAGGAGGGTCATGCCTTTTAGTGGTTAGAGAGGCAAGCTGTAGCCTCCCTTCTTAGAGAAGGGGAATTGAGGAAGAGATTTCTAGTGG-CCCTTACAATCCTCCCCTCACTTTCCAGGCTCCCTAGTAAGACTGGAAGAAGTCCCTGAGTAAACAGCGTTTTGTGAGTTTGAGGGACTAGGTAAAAACGTTAAGTGAACATACAATGGTTTTGCTTTGATAAC--TTTTAAATATCCTTTTGGTTGTTGAAACTTCTGTTGACAGTGAAAC--CTTTTGTCCTTATTTTTCAATTGGAAGATCTTTCTTGCCCACTTGAAAAGATTGAGTTTGGGACCAATCCCTGACCCCACTTCCTTCCTGAATCTCTTAGTGTATGGCATACAGCTGGGCATATGGTAATCTCGGGGACGGGATTGTACTCATAGAGCTATGCTTGACACCTAGGACTTTAGGTGGCTCATGTATTTTTGACGACAACTTTTCATTTTATTCTC----GTTTATTCCATTTCTGTTTCAGTGTCTTGGGTCATGAAACTTAATCCACAACAATCTCCCTTATATGTGAGCAAATCATGAGATTTC-------------------------TTTTCATTTTGTATTTATCTGTTCTGTTTACTTGTTATAATAAGCTCACACTCTC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20318686 750 -  24206276 A-CATGCTATTCTTAATGTTCAGGAAGTCAACCCTGGAAGCCTTCTCTAAATCGTAATGGGATTTTTATGAGAATTCATTTAGTGAAAATAACAACAATCAGGGAATCCAGCTATTAACTCTGAGGAGGGTCATGCCTTTTAGTGGTTAGAGAGGCAAGCTGTAGCCTCCCTTCTTAGAGAAGGGGAATTAAGGAAGAGAGTTCTTGTGG-CCCTTGCAATCCTCCCCTCACTTTCCAGGCTCCCTAGTAAGAC--GAAGAAGTCCCTGAGTAAACAGCATTTTGTGAGTTTGAGGGACTAGGTAAAAACG-TAAGTGAACCTACAATGGTTTTCCTTTGATAAC--TTTTAAATATCCTGTTGGTTGTTGAAACTTCTG-TGACAGTGAAAC--CTTTTGTCCTTATTTTTCAATTGGAAGATCTTTCTTCCCCACTTGAAAAGATTGAGTTTGGGATCAATCCCTGACCCCACTTCCTTCCTGAATCTCTTAGTGTATGGCATACAGCTGGGCATATGGTAATCTCAGGCACGGGAGTGTACTCATAGAGCTATGCTTGACACCTAGGACTTTAGGTGGCTCATGTATTTTTGATGACAACTTTTGATTTTATTCTC----ATTTATTCCATTTCTGTTTCAGTGTCTTGGGTCATGAAACTTAATCCACAACAATCTCCCTTATATGTGAGCAAATCATGAGATTTC-------------------------TTTTCATTTGGTATTTATCTGTTCTGTTTACTTGTTATAATAAGC-CACACTCTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1076768 777 +   1458659 A-CATGCTATTCTTAATGTTCAGGAAGTCAACCCTGGAAGCCTTCTCTAAATCTTAATGGGATTTTTATGAGAATTCATTTAGTGAAAATAACAACAATCAGGGAATCCAGCTATTAACTCTGAGGAGGGTCATGCCTTTTAGTGGTTAGAGAGGCAAGCTGTAACCTCCCTTCTTAGAGAAGGGGAATTGAGGAAGAGATTTCTCGTGG-CCCTTGCAATCCTCCCCTCACTTTCCAGGCTCCCTAGTAAGACTGGAAGAAGTCCCTGAGTAAACAGCGTTTTGTGAGTTTGAGGGACTAGGTAAAAACG-TAAGTGAACATACAATGGTTTTCCTTTGATAAC--TTTTAAATATCCTTTTGGTTGTTGAAACTTCTG-TGACAGTGAAAC--CTTTTGTCCTTATTTTTCAATTGGAAGATCTTTCTTCCCCACTTGAAAAGATTGAGTTTGGGACCAATCCCTGACCCCACTTCCTTCCTGAATCTCTTAGTGTATGGCATACAGCTGGGCATATGGTAATCTCAGGGACGGGATTGTACTCATAGAGCTATGCTTAACACCTAGGACTTTCAGTGGCTTATATATTTTTGATGACAACTTTTGATTTTATTCTC----ATTTATTCCATTTCTGTTTCAGTGTCCTGGGTCATGAAACTTAATCCACAACAAGCTCCCTTATATGTGAGTAAATCATGAGatttcttttcattttgtatttatctgttctttttcattttgtatttatctgttctgtttACTTGTTATAATAAGC-CACACTCTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       282803 750 +   4111199 A-CATGCTATTCTTAATGTTCAGCAATTCAAGCCTGTAAGCCTTCTCTAAATCTTAATGAGATTTTTATGAGAATTCATTTAGTGAAAAT---AACAATCAGGGAATCCAGCTATTAACTCTGAGGAGGGTCATGCCTTTTAGTGGTTAGAGAGGCAAGCTGTAGCCTCCCTTCTCAGAGAAGGGGAGTTGAGGAAGAGATTTCTAGTGG-CCCTTGCAATCCTCCCCTCACTTTCCAGGCTCCCTAGTAAGACTGGAAGAAGTCCCTGAGTAAACAGCATTTTGTGAGTTTGAGGGACTAGGTAAAAACA-TACGTGAACGTACAATGGTTTTGCTTTGATAAC--TTTTAAATATCCTGTTGGTTGTTGAAACTTCTG-TGACAGTGAAAG--CTTTTGTCCTTATTTTTCAATTGGAAGATCTTTCTTGCCCACTTGAAAAGACTGAGTCTGGGATCAATCCCTGACCCCGCTTCCTTCCTGAATCTCTTAGTGTATAGCATACAGCTGGGCATATGGTAATCTCAGGGACGGGATTGTACTCATAGAGCTATGCTTGACGCCTAGGACTTTAGGTGACTTACGTATTTTTGATGACAACTTTTGATTTTATTCTC----ATTTATTCCATTTCTGTTTCAGTGTCTTGGGTCATGAAACTTAATCCACAACAATCTCCCTTATATGTGAGCAAATCATGAGATTTC-------------------------TTTTCATTTTGTATTTATCTGTTCTGTTTACTTGTTATAATAAGCTCACACTCTC
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      3032092 754 -  42888418 A-CATGCTATTCTTAATATTCAGGAATTCAACCCTGGAAGCCTTCTCTAAATCTTAATGAGATTCTTATGAGAATTCATTTAGTGAAAAT---AACAATCAGGGAATCCAGCTATTAATTTTGAGGAGGGTCATGACTTTTAGTGATTAGAGGGGCAAGCTGTAGCCTCCCTTCTCAGAGAAGGTGTATTAAGAGAGAGAGTTCTAGGGGTCCCTTGCAATCCTCCTTTCACTTTCCAGGCTTCTTGGTAAAACTGGAAGAAGTCCCTGAGCAAACAGCGTTTTGAGAGTTTGAGGGACTACATAAAAATG-TAAGTGAACATGCAGTAGTTTTATTTTGATAACTGCTTTAAATATCCTGTTGGTTGTTGAAACTTCTG-TGACAGTGAAGC--ATTTTATCTTTATTTTTCAATCCGAAAATCTTTCTTCCCCGCTTGAAAAGATTGAATCTGGGATCAATCCCTCACCCCATCTCCTTCCTAAATCTCTTAGTGTATAGTATACAACTGGCCATATAGTAATCTCTAGTGTGGGATTGTACTC--AGAGCTATGCTTGACATCTAGGACTTTAGGTGGCTTATGTATTTTTGATGACAGCTTTTAATTTTATTCTCATTTATTTATTCCATTTCTGTTTCAGTGTCCTGGGTCATGAAACTTACTCCACAACAAGCTCCCTTATATGTGAGTAAATTCTGAGATTT--------------------------TTTAAATTTTGTATTTATCTGTTCTGTTTACTTGTTATAATAAGCTCACACTCTC
i aotNan1.NW_018505940v1    C 0 I 1
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=881533.000000
s hg38.chr15_KI270850v1_alt    154663 187 +    430880 ACATGATAGATCCTCAAGGAAAATTTTAACCATATGTGCATGAATATATTGGTGTAAGACACTTCAGAAATTGAGTTTGATTTAGTAAGTACTAAATGGCTAATCTGTGCATGGAACTGAAAAC-AAATAATACCTGTAAGACTTGCGAGTTAATTTAG-TCAGGGCGATAGTATGCACGTATGAAACA
s panTro5.chr15              66153912 187 +  83230942 ACATGATAGATTCTCAAGGAAAAATTTAACCATATGTGCATGAATATATTGGTGTAAGACACTTCAGAAATTGAGTTTGATTTAGTAAATACTAAATGGCTAATCTGTGCATGGAAATGAAAAC-AAATAATACCTGTAATACTTGAGAGTTAATTTAG-TCAGGGTAATAGTATGCACGTATGAAACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              83387774 187 +  99763055 ACATGATAGATTCTCAAGGAAAAATTTAACCATATGTGCATGAATATATTGGTGTAAGACACTTCAGAAATTGAGTTTGATTTAGTAAATACTAAATGGCTAATCTGTGCATGGAAATGAAAAC-AAATAATACCTGTAATACTTGAGAGTTAATTTAG-TCAGGGTAATAGTATGCACGTATGAAACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       254140 185 +    378907 ACATGATAGAT-CTCAAGGAAAATTTTAACCATATGTGCATGAATATATTGGTGTAAGACACTTCAGAAATTGAGTTTGATTT-GTAAGTACTACATGTCTAATCTGTGCGTGGAACTGAAAAC-AAATAATACCTGTAAGACTTGAGAGTTAATTTAG-TCAGGGCGATAGTATGCACGTATGAAACA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101785935 187 + 121039945 ACATGATAGATTCTCAAGGAAAATTTTAACCATATATGCATGAATATATTGGTGTAAGACACTTCAGAAATTGAGTTTGATTTAGTGAATACTAAATGGCTGATCTGTGCATGGAACTGAAAAC-AAATAATACCTGTAAGACTCGAGAGTTAATTTAG-TCAGGGCGATAGTATGCACGTATGAAACA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106479275 187 - 171882078 ACGTGATAGATTCTCAAGGAAAATTTTAACCATATATGCATGAATACATTGATGTAAGACACTTCAGAAATTGAGTTTGATTTAGTAAATACTAAATGGCTAATCTGTGCATGGAACTGAAAAC-AAATAATACCTGTAAGACTTGAGAGTTAATTTAG-TCAGGGCGATAGTATGCACATATGAAACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6196442 187 +   6271500 ACGTGATAGATTCTCAAGGAAAATTTTAACCATATATGCATGAATACATTGATGTAAGACACTTCAGAAATTGAGTTTGATTTAGTAAATACTAAATGGCTAATCTGTGCATGGAACTGAAAAC-AAATAATACCTGTAAGACTTGAGAGTTAATTTAG-TCAGGGCGATAGTATACACATATGAAACA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5113939 187 +   5160157 ACGTGATAGATTCTCAAGGAAAATTTTAACCATATATGCATGAATATATTGATGTAAGACACTTCAGAAATTGAGTTTGATTTAGTAAATACTAAATGGCTAATCTGTGCATGGAACTGAAAAC-AAATAATGCCTGTAAGACTTGAGAGTTAATTTAG-TCAGGGCGATAGTATACACATATGAAACA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20319436 188 -  24206276 ACGTGATAGATTCTCAAGGAAAATTTTAACCATGTATCCATGAATATATTTGTGTAAGACACTTCAGAAATTGAGTTTGATTTAGTAAATACTAAATGGCTAATCTGTGCATGGAACTGAAAACAAAATAATACCTGTAAGACTTGAGAGTTAATTTAG-TCAGGGCGATAGTATGCACATATGAAGCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1077545 187 +   1458659 ACGTGATAGATTCTCAAGGAAAATTTTAACCATATATGCATGAATATATTGATGTAAGACACTTCAGAAATTGAGTTTGATTTAGTAAATACTAAATGGCTAATCTGTGCATGGAACTGAAAAC-AAATAATACCTGTAAGACTTGAGAGTTAATTTAG-TGAGGGTGATAGTATACACATATGAAACA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       283553 188 +   4111199 ACGTGATAGATTCTCAAGGAAAATTTTAACCATATATGCATGAATATATTGATGTAAGACACTTCAGAAATTGAGTTTGATTTAGTAAATACTGAATGGCTAATCTGTGCATGGAACTGAAAAC-AAATAATACCTGTAAGACTTGAGAGTTAATTTAGTTCAGGGCGATAGTATGCGCATATGAAACA
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018505940v1      3032846   1 -  42888418 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=853504.000000
s hg38.chr15_KI270850v1_alt    154850 159 +    430880 AATTGTCCTGCCAAACAGTACTGTAGCTTCTTATTTTTTACCTGCAGTGCATTCCTGTAAAAGTAGTGTGGAGATCCTCCTACTGCCACTGTGATTTACGTTATGTTGCCACTAGGTGGCACTATGTCATTGGCAAGAGTGCTGT-GTTCTTTAGGACTC
s panTro5.chr15              66154099 159 +  83230942 AATTGTCCTGCAAAACAGTACTGTAGCTTCTTATTTTTTACCTGCAATTCATTTCTGTAAAAGTAGTGTGGAGATCCTCCTACTGCCATTGTGATTTACCTTATGTTGCAGCTAGGTGGCACTATGTCATTGGCAAGAGTACTGT-TTTCTTTAGGACTC
i panTro5.chr15             C 0 I 2330
s panPan2.chr15              83387961 159 +  99763055 AATTGTCCTGCCAAACAGTACTGTAGCTTCTTATTTTTTACCTGCAATTCATTTCTGTAAAAGTAGTGTGGAGATCCTCCTACTGCCATTGTGATTTACCTTATGTTGCAGCTAGGTGGCACTATGTCATTGGCAAGAGTACTGT-TTTCTTTAGGACTC
i panPan2.chr15             C 0 I 2328
s gorGor5.CYUI01015946v1       254325 157 +    378907 AATTGTCCTGCCAAACAGTACTGTAGCTTCTTATTTTTTACCTGCAGTGCATTCCTGTAAAAGTAGTGTGGAGATCCTCCTACTGCCACTGTGATTTACCTTATATTGCA-CTAGGTGGCACTATGTCATTGGCAAGAGTGCTGT--TTCTTTAGGACTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101786122 157 + 121039945 AATTGTCCTGCCAAACAGTACTGTAGCTTCTTATTTTTTACCTGCAGTTCATTTCTGTAAAAGTGGTGTGGAGATCCTCCTACTGCCACTGTGATTTACCTTATGTTGCAACTAGGTGGCACTGTGTCATTGGCAAGAGTGCTGT-TTTCTTTAGGAC--
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106479462 158 - 171882078 AATTGTCCTGCAAAACAGTACTGTAGTTTCTTATTTTTTACCTGCAGTGCATTCCTGTAAAAGTAGTGTGGAGATCCTCCTACTGCCACTGTGATTTACCTTTTGTTGCAACTAGATGGCACTATGTCATTGGCAAGAGGGCTGT-TTTCTTTA-GACTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6196629 158 +   6271500 AATTGTCCTGCAAAACAGTACTGTAGCTTCTTATTTTTTACCTGCAGTGCATTCCTGTAAAAGCAATGTAGAGATCCTCCTATTGCCACTGTGATTTACCTTTTGTTGCAACTAGATGGCACTATGTCATTGGCAAGAGTGCTGT-TTTCTTTA-GACTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5114126 158 +   5160157 AATTGTCCTGCAAAACAGTACTGTAGCTTCTTATTTTTTACCTGCAGTGCATTCCTGTAAAAGTAGTGTGGAGATCCTCCTACTGCCATTGTGATTTACCTTATGTTGCAACTAGATGGCACTATGTCATTGGCAAGAGTGCTGT-TTTCTTTA-GACTC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20319624 159 -  24206276 AATTGTCTTCCAAAACAGTACTGTAGCTTCTTATTTTTTACCTGCAGTGCATTCCTGTAAAAGTAGTGTGGAGATCCTCCTACTGCCATTGTGATTTACCTTATGTTGCAACTAGATGGCACTATGTCATTGGCAAGAGTGCTGT-TTTCTTTAGGACTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1077732 154 +   1458659 AATTGTCCTGCAAAACAGTACTGTAGCTTCTTATTTTTTACCTGCAGTGCATTCCTGTAAAAGTAGTGTGGAGATCCTCCTACTGCCATTGTGATTTACCT----TTGCAAGTAGGTGGAACTGTGTCATTGGCAAGAGTGCTGT-TTTCTTTA-GACTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       283741 158 +   4111199 AATTGTCCTGCAAAACAGTACTGTAGCTTCTTATTTTTTACCTGCAGTGCATTCCTGTAAAAGTAGTGTGGAGATCCTCCTGCTGCCACTGTGATTTACGTTATGTTGCAAGTAGGTGGAACTATGTCATTGGCAAGAGTGCTGT-TTTCTTTA-GACTC
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      3032847 159 -  42888418 AATTGTCCTGCTAAACAGTACTGTAGCTTCTTA-GTTTTACCTGCACTGCATTCCTGTAAAAGTAGTGTGGAGATCCTTCTACTGCCACTGTGATTTACCTTATGTTGCAGCTAGGTGGCACTATGTCATTGGCAAGAGTGCTGTTTTTTTTTAGGACTC
i aotNan1.NW_018505940v1    I 1 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=354842.000000
s hg38.chr15_KI270850v1_alt    155009 102 +    430880 TGGGTGAAAGCTGATATATCATCTCCCTGAAGTGAGGGACT-----------------------TTGAAGATAAAATTGATAAATGATTGAATCAAGGCTGGAAAAGGTAGGCTGTAGGCGACTA
s gorGor5.CYUI01015946v1       254482  99 +    378907 TGG-TGAAAGCTGATATATCGTCTCCCTGAAGTGAGG-ACT-----------------------TTGAAGATAAA-TTGATAAATGATTGAATCAAGGCTGGAAAAGGTAGGCTGTGGGCGACTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101786279  84 + 121039945 ------------------TCATCTCCCTAAAGTGAGGGACT-----------------------TTGAAGATAAAATTGATAAATGATTGAATCAAGGCTGGAAAAGGTAGGCGGTAGGCGACTA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106479620 102 - 171882078 TGGGTGAAAGCTGATATATCATCTCCCTAAAGTGAGGGACT-----------------------TTAAAGATAAAATTGATGAATGATTGAATCAAGGCTGGAAAAGGTAGGCTGTAGGTGACTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6196787 102 +   6271500 TGGGTGAAAGCTGATATATCATCTCCCTAAAGTGAGGGACT-----------------------TTAAAGATAAAATTGATGAATGATTGAATCAAGGCTGGAAAAGGTAGGCTGTAGGTGGCTA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5114284 102 +   5160157 TGGGTGAAAGCTGATATATCATCTCCCTAAAGTGAGGGACT-----------------------TTAAAGATAAAATTGATGAATGATTGAGTCAAGGCTGGAAAAGGTAGGCTGTAGGCGACTA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20319783 124 -  24206276 TGGGTGAAAGCTGATATATCATCTCCCTAAA-TGAGGGACTTTGAAGACAAaattaatgaatgattgaagacaaaattgatgaatgattgaatcaaGGCTGGAAAAGGTAGGCTGTAGGCGACTA
i chlSab2.chr29             C 0 I 5625
s manLeu1.NW_012105520v1      1077886 102 +   1458659 TGGGTGAAAGCTGATATATCATCTCCCTAAAGTGAGGGACT-----------------------TTAAAGATAAAATTGATGAATGATTGAATCAAGGCTGGGAAAGGTAGGCTGTAGGCGACTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       283899 102 +   4111199 TGGGTGAAAGCTGATATATCATCTCCCTAAAGTGAGGGACT-----------------------TTGAAGGTAAAATTGATGAATGATTGAATCAAGGCTGGAAAAGGTAGGCTGTAGGTGACTA
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      3033006 102 -  42888418 TGGGTGAAAGCTGGTATATCATTTCTCTAAAGTGAGGGACT-----------------------TAGAAGATAAAACTGATGAATGATTGAATCAAGGCTGGAAAAGGTAAGCTCTGGGCGACTA
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e panPan2.chr15              83388120 2328 +  99763055 I
e saiBol1.JH378276            2841307   0 +   3282555 I
e panTro5.chr15              66154258 2330 +  83230942 I

a score=2520751.000000
s hg38.chr15_KI270850v1_alt    155111 684 +    430880 TTCTTCATTATTGTAAGAGTGAATTAA-TTGAATTTGGGTGGTGAAAAGTACCCGTTTGATGAGAAGCCAG-CTTAGGGTTGTGGATGGTTAGAGCTGTGAGAGGCCAGTAGATGCTGGGTTGCTATGCTCTGGAGAGGGTGAGAAAATATATTTGTAATAGGACTTGATTCCAGCCTTCAAGAATATGGATCATTTATTTGGACAAAACGTCCCCAGAATTAGTTGAAGACAAAAGGCAAATGGTCA--GGAATGGGAGGCAGTGAACATAGTGTTGGATGAATAGTGGGGGGATGGTCAGTGGAAACTCTGGCCCACCCAAGTTTGTGTCAGGTAATAATGGGAGATAAGCCTGAAAAGGTGGATAAAGCTCAATTGTGAAGGAAGACAAAGGTGTGAGGATTTTGTTTTGTGACCACCGAGGAGCCATTGATGGTGTTTAATTTAAGGATGCTTTTCCTTTTATGCGTTTGTACAT-AAAAACATAAATGTACTTAACCATTCTGTATTAATAATAGTCATTTACCTTTCCAACATAAAATGTTCATGTAACTTCTGCATAGCTGATTTTTACGTTAAATGTAACATGTAAAGAAATATATGTGTGTTTTTAGAAGACGTCTTATGTGCTCATTTTCTTTCTAGATTACTTGGAGATAATTTATGTTTACCAGTGGTTTTGCATGT
s gorGor5.CYUI01015946v1       254581 682 +    378907 TTCTTTATTATTGTAAGAGTGAATTAA-TTGAATTTGGGTGGTGAAAAGTACCCGTTTGATGAGAAGCCAG-CTTAGGGTTGTGGATGGTTAGAGCTGTGAGAGGCCAGTAGATGCTGGGTTGCTATGCTCTGGAGAGGGTGAGAACATGTATTTGTAATAGGACTTGATTCCAGCCTTCAAGAATATGGATCATTTATTTGGACAAAACGTCCCCAGAATTAGTTGAAGACAAAAGGCAAATGGTCA--GGAATGGGAGGCAGTGAACATAGTGTTGGATGAATAGtcgggggatggtcagtggaaactctggcccacccaagtttgtgtcaggtaataatgggagataagcctgaaaaggtggataaagctcaattgtgaagGAAGACAAAGGTGTGAGGATTTTGTTTTGTGACCACCGAGGAGCCATTGATGGTGTTTATTTTAAGGATGCTTTTCCTTTTATGCATTTGTACAT-AAAAACATAAATGTACTTAACC-TTCTGTATTAATAATAGTCATTTACCTTTCCAACATAAAATGTTCATGTAACTTCTG-ATAGCTGATTTTTACGTTAAATGTAACATGTAAAGAAATATATGTGTGTTTTTAGAAGACGTCTTATGTGCTCATTTTCTTTCTAGATTACTTGGAGATAATTTATGTTTACCAGTGGTTTTGCATGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101786363 682 + 121039945 TTGTTTATTATTCTAAGAGTGAATTAA-TTGAATTTGGGTGGTGAAAAGTGCCCGTTTGATGAGAAGCCAG-CTTAGGGTTGTGGATGGTTAGAGCTATGAGAGGCCAGTAGATGCTGGGTTGCTATGCTCTGGAGAGGGTGAGAAAATATATTTGTAATAGGACTTGATTCCAGCCTTGAAGAATATGGATCATTTAGTTGGACAAAACGTCCCCCAAATTAGTTGAAGACAAAAGGCAAATGGTCA--GGAATGGGAGGCAGTAAACATAGTGTTGGATGAATAGTGGGGGGATGGTCAGTGGAAACTCTGGCCCACCCAAGTTTGTGTCAGGTAATAATGGGAGATAAGCCTGAAAAGATGGGTAAAGCTCAATTGTGAAGGAAGACAAAGATGTGAGGATTTTGTTTTGTGACCACCAAGGAGCCATTGATGGTGTTTATTTTAAGGATGCTTTTCCTTTTATGCATTTATACAT-AAATACATAAATGTACTTAACCATTCTGTATTAATAATAGTCATTTACCTTTCCAACATAAAATGTTTATGTAACTTCTGCATAGCTGATTTTTATGTTAAATGTAACATGTAAAGAA--ATATGTGTGTTTTTAGAAGATGTCTTATGTGCACATTTTCTTTCTAGATTACTTGGAGATAATTTATGTTTACCAGTGGTTTTGCATGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106479722 677 - 171882078 TTCTTTATTATGGTAAGAGTGAATTAG-TTGAATTTGGGTGATGAAAAGTGCCCGTTTGATGAGAAGCCAG-CTTCGGGTTGTGGATGGTTAGGGCTATGAGAGGCCAGTAGTTGCTGGGTTGCTATGCTCTGGAGAGGGTGAGAGAATATCTTTGTAATAGGACTTGATTCCGGCCTTGAAGAATATGGATCATTTAGTTGGACACAACGTCCCCAGAATTAGTTGAAGACAAAAGGTAAATGGTCA--GGAATGGGAGGCAGTGAACATAGTGTTGGATGAATAGTGAGGGGATGGTCAGTGGAAACTCTGGCCCACCCAAGTTTGTGTCAGGTAATGATGGGAGATACGCCTGAAAAGATGGATGAAGCTCAATTGTGAAGGAAGACAAAAGTGTGAGGATTTTGTTTTGTGACCACCGAGGAGCCATTGATGGTGTTTATTTTGAGGATGCTTTTCCTTTTATGCATTTATACAT-AAATACATAATTATAC-------TGCTGTATTAATAATAGTCATTTACCTTTCCAACATAAAATGTTAATGTAACTTCTGCATAGCTGATTTTTATGTTGAATGTAACATGTCAAGAAATATATGTGCCTTTTTAGAAGTTGTCTTATGTGCTCATTTTCTTTCTAGACTACTTGGAGATAGTTTATGTTTACCAGCGGGTTTGCATAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6196889 678 +   6271500 TTCTTTATTATGGTAAGAGTGAATTAG-TTGAATTTGGGTGATGAAAAGTGCCCGTTTGATGAGAAGCCAG-CTTCGGGTTGTGGATGGTTAGGGCTAGGAGAGGCCAGTAGTTGCTGGGTTGCTATACTCTGGAGAGGGTGAGAGAATATCTTTGTAATAGGACTTGATTCCGGCCCTGAAGAATATGCATCATTTAGTTGGACACAACGTCCCCAGAATTAGTTGAAGACAAAAGGTAAATGGTCA--GGAATGGGAGGCAGTGAACATAGTGTTGGATGAATAGTGgggggatggtcagtggaaactctggcccacccaagtttgtgtcaggtaatgatgggagatacgcctgaaaagatggatgaagctcaattgtgaagGAAGACAAAAGTGTGAGGATTTTGTTTTGTGACCACCGAGGAGCCATTGATGGTGTTTATTTTGAAGATGCTTTTCCTTTTATGCATTTATACATAAAATACATAATTATAC-------TGCTGTATTAATAATAGTCATTTACCTTTCCAACATAAAATGTTAATGTAACTTCTGCATAGCTGATTTTTATGTTAAATATAACATGTCTAGAAATATATATGTGTTTTTAGAAGTTGTCTTATGTGCTCATTTTCTTTCTAGACTACTTGGAGATAGTTTATGTTTACCAGCGGGTTTGCATAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5114386 675 +   5160157 TTCTTTATTATGGTAAGAGTGAATTAG-TTGAATTTGGGTGGTGAAAAGTGCCCGTTTGATGAGAAGCCAG-CTTCGGGTTGTGGATGGTTAGGGCTATGAGAGGCCAGTAGTTGCTGGGTTGCTATGCTctggagagggtgagagaatatctttgtaataggacttgattctggccttgaggaatatggatcatttagttggacaaaatgtccccagaattagttgaagacaaaaggcaaatggtca--ggaatgggaggcagtgaacatagtgttggatgaatagtggggagatggtcagtggaaa--ctggcccacccaagtttgtgtcaggtaataatgggagataagcctgaaaagatggatgaagctcaattgtgaagGAAGACAAAAGTGTGAGGATTTTGTTTTGTGACCACCGAGGAGCCATTGATGGTGTTTATTTTGAGGATGCTTTTCCTTTTATGCATTTATACAT-AAATACATAAATATAC-------TGCTGTATTAATAATAGTCATTTACCTTTCCAACATAAAATGTTCATGTAACTTCTGCATAGCTGATTTTTATGTTGAATGTAACATGTCAAGAAATATATGTGCCTTTTTAGAAGTTGTCTTATGTGCTCATTTTCTTTCTAGACTACTTGGAGATAGTTTATGTTTACCAGCGGGTTTGCATAT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20325532 676 -  24206276 TTCTTTATTATGGTAAGAGTGAATTAGTTTGAATTTGGGTGGTGAAAAGTGCCCGTTTGATGAGAAGCCAG-CTTCGGGTTGTGGATGGTTAGGGCTATGAGAGGCCAGTAGTTGCTGGGTTGCTATGCTCTGGAGAGGGTGAGAGAATATATTTGTAATAGGACTTGATTCCGGCCTTGAAGAATATGGATCATTTAGTTGGACAAAATGTCCCCAGAATTAGTTGAAGACAAAAGGTAAATGGTCA--GGAGTGGGAGGCAGTGAACATAGTGTTGGGTGAATAGTGGGGGGATGGTCAGTGGAAA--CTGGCCCACCCAAGTTCGTGTCAGGTAATAATGGGAGATAAGCCTGAAAAGATGGATGAAGCTCAATTGTGAAGGAAGACAAAAGTGTGAGGATTTTGTTTTGTGACCTCTGAGGAGCCATTGATGGTGTTTATTTTGAGGATGCTTTTCCTTTTATGCATTTATACAT-AAATACATAAATATAC-------TGCTATATTAATAATAGTCATTTACCTTTCCAACATAAAATGTTGATGTAACTTCTGCATAGCTGATTTTTATGTTAAATGTAACATGTCTAGAAATATATGTGTGTTTTTAGAAGTTGTCTTATGTGCTCATTTTCTTTCTAGACTACTTGGAGATAGTTTATGTTTACCAGCGGGTTTGCATAT
i chlSab2.chr29             I 5625 C 0
s manLeu1.NW_012105520v1      1077988 677 +   1458659 TTCTTTATTATGGTAAGAGTGAATTAG-TTGAATTTGGGTGGTGAAAAGTGCCCATTTGATGAGAAGCCAG-CTTCGGGTTGTGGATGGTTAGGGCTATGAGAGGCCAGTAGTTGCTGGGTTGCTATGCTCTGGAGAGGGTGAGAAAATATATTTGTAATAGGACTTGATACCGGCCTTGAAGAATATGGATCATTTAGTTGGACACAACGTCCCCAGAATTAGTTGAAGACAAAAGGTAAATGGTCA--GGAATGGGAGGCAGTGAACATAGTGTTGGATGAATAGTGAGGGGATGGTCAGTGGAAACTCTGGCCCACCCAAgtttgtgtcaggtaatgatgggagatacgcctgaaaagatggatgaagctcaattgtgaagGAAGACAAAAGTGTGAGGATTTTGTTTTGTGACCACCGAGGAGCCATTGATGGTGTTTATTTTGAGGATGCTTTTCCTTTTATGCATTTATACAT-AAATACATAAATATAC-------TGCTGTATTAATAATAGTCATTTACCTTTCCAACATAAAATGTTAATGTAACTTCTGCATAGCTGATTTTTATGTTAAATGTAACATGTCTAGAAATATATGTGTGTTTTTAGAAGTTGTCTTATGTGCTCATTTTCTTTCTAGACTACTTGGAGATAGTTTATGTTTACCAGCGGGTTTGCACAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       284001 674 +   4111199 TTCTTTATTATTGTAAGAGTGAATTAG-TTGAATTTGGGTGGTGAAAAGTGCCCGTTTGATGAGAAGCCAG-CTTCGGGTTGTGGATGATTAGAGCTATGAGAGGCCAGTAGTTGCTGGGTTGCTATGCTCTGGAGAGGGTGAGAAAATATATTTGTAAtaggacttgattccggccttgaagaatatggatcatttagttggacaaaatgtccccagaattagttgaagacaaaaggcaaatggtca--ggaatgggaggcagtgaacatagtgttggatgagtagtcgggggatggtcagtggaaa--ctggcccacccaagtttgtgtcaggtaataatgggagaaaagcctgaaaagatggataaagctcaattgtgaagGAAGACAAAAGTGTGAGGATTTTGTTTTGTGACCACTGAGGAGCCATTGATGGTGTTTATTTTGAGGATGCTTTTCGTTTTATGCATTTATACAT-AAATACATAAATATAC-------TGCTGTATTAATAATAGTCATTTACCTTTCCAACATAAAATGTTCATGTAACTTCTGCACAGGTGATTTTTATGTTAAATGTAACATGTCAAGAAATATATGTGTGTTTTTAGAAGTTGTCTTATGTGCTCATTTTCTTTCTAGACTACTTGGAGATAGTTTATGTTTACCAGC-GGTTTGCATAT
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      3033108 679 -  42888418 TTCTTTATT---GTAAGAGTGAATTAG-TTGAATTTGGGTGGTGAAGAGTACCTGTCTGATGAGAAGCCAGCCTTAGGGTTGTGGATGG-TAGGACTATGAGAGGCCTGTAGATGTTGGGTTGCTATGTTCTGGAAAGGGTGAGAAAATTTATTTGTAATAGGACTTGAATCAGGTCTTGAAAAATAAGGATCATTTACTTGCACAAAACATCCCCAGAATTAGTTGAAGACAAAAGGCAAATGGTCAGTGAAATGGGTGGCAGTGAACATAGTGTTGCATGAATAGT-GGGGGTTGGTCAGTGGAAACTCTGGCCCACCCAAAtttgtgtcagggaataatgggaggtaagcctaaaaagatggataaaactcagttgtgaagGAAGACGAAGGTGTGGGGATTTTGTATTGTGATGACCAAGGAGCCATTGATGGTGTTTATTTTAAAGATGCTTTTCCTTTTATGTATTTATATAT-AAATACATAAATGTACTGGACCATGCTGTATTAATAATAGACATTTACCTTTCTAACACAAAATGTTCATGTAACTTCTGCATAGCTGATTTTTATGTTACATGTAACATGTAAAGAAAAATACGTG--TTCTTAGAAGAGATTTTATGTATTCATTTTCTTTCTAGACAACCTGGAGATTA-TTATGTTCACCAGTGGGTTTGCATGT
i aotNan1.NW_018505940v1    C 0 I 39
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e panPan2.chr15              83388120 2328 +  99763055 I
e saiBol1.JH378276            2841307   0 +   3282555 I
e panTro5.chr15              66154258 2330 +  83230942 I

a score=98667.000000
s hg38.chr15_KI270850v1_alt    155795 46 +    430880 GAACTGGGTACCTTGGGTTAtttattattattattattattatt---ta
s gorGor5.CYUI01015946v1       255263 49 +    378907 GAACTGAGTACCTTGGGTTATttattattattattattattattattTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101787045 48 + 121039945 GAACTGAGTACCTTGGGGtttttttttttttttttttttttttt-ttGA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106480399 40 - 171882078 GAACTGAGTACCTTGGGTTAtttatttttatttttttt---------ga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6197567 40 +   6271500 GAACTGAGTACCTTGGGTTAtttatttttatttttttt---------ga
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5115061 40 +   5160157 GAACTGAGTACCTTGGGttatttatttttatttttttt---------ga
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20326208 40 -  24206276 GAACTGAGTACCTTGGGTTAtttatttttaattttttt---------ga
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1078665 40 +   1458659 GAACTGAGTACCTTGGGttatttatttttatttttttt---------ga
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       284675 40 +   4111199 GAACTGAGTACCTTGGGttatttatttttatttttttt---------ga
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018505940v1      3033787 39 -  42888418 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e panPan2.chr15              83388120 2328 +  99763055 I
e saiBol1.JH378276            2841307  0 +   3282555 I
e panTro5.chr15              66154258 2330 +  83230942 I

a score=1311963.000000
s hg38.chr15_KI270850v1_alt    155841 355 +    430880 gaaaacgggtctcgcactgtcatccttgttggagtgcagtggagc-------------------gatcatagctcgctgcagccttgaagtcctgggctctaagcagtcctgcttcagcctcccgagtaactgggagtacaggcgcatgccaccatgccgagctaaatcctcccttttaaagtgtgtgattctttggtttttcgtgtgtatacagttttgta---attgccattgtctgac--cagaacattttcatcaccccccaaaaaaagtgccatatccattagcagtcactcaccattccctgctcctctcaggctgtggcaaccacttgtatacttcctgtctttattgatatacctattctggaaagttcat
s gorGor5.CYUI01015946v1       255312 354 +    378907 GAAAACgggtctc-cactgtcatccttgttggagtgcagtggagc-------------------gatcatagctcgctgcagccttgaagtcctgggctctaagcagtcctgcttcagcctcccgagtaactgggagtacaggcgcatgccaccatgccgagctaaattctcccttttaaagtgtgtgattctttggtttttcgtgtgtatacagttttgta---attgccattgtctgac--cagaacattttcatcaccccccaaaaaaagtgccatatccattagcagtcactcaccattccctgctcctctcagcctgtggcaaccacttgtatacttcctgtctttattgatatacctattctggaaagttcat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101787093 354 + 121039945 GAAAACTggtctcactctgtcatccttgttggagtgcggtggagt-------------------gatcatagctcgctgcagccttgaagtcctgggctc-aagcagtcctgcttcagcctcctgagtaactgggagtacaggcgcatgccactatgccgagcTaaattctcccttttaaagtgtgtgattgtttggtttttcgtgtgtgtacagttttgca---attaccattgtctgac--cagaacattttcatcagcccccaaaaaaggtgccatacccattagcagtcactcaccattccctgctcctctcagcctgtggcaaccacttacatacttcctgtctttattgatatacctattctggaaagttcat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106480439 372 - 171882078 gagaacgggtcttgcgctgtcatcctcattggagtgcggtggagcgatcatagctcgctgcagtgatcatagctcgctgcagccttgaagtcctgggctc-aagcagtcctgcttcagcctcccgagtaactgggagtacaggtgcatgccaccatgccgagctaaattttccctttagaagcgtgtgattctttggttttttgtgtgtatacagttttgca---atcaccattgtctgac--cagaacattttcatca-cccccaaataaagtgccatacccattagcagtcactcgccattccctgatcctctcagcctgtgacaaccacttatatacttcttgtctttattgacatacctattccggaaagttcat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6197607 372 +   6271500 gagaacgggtcttgcgctgtcatcctcattggagtgcggtggagcgatcatagctcgctgcagtgatcatagctcgctgcagccttgaagtcctgggctc-aagcagtcctgcttcagcctcccgagtaactgggagtacaggtgcatgccaccatgccgagctaaattttccctttagaagcgtgtgattctttggtttttcgtgtgtatacagttttgca---atcaccattgtctgac--cagtacattttcatca-cccccaaataaagtgccatacccattagcagtcagttgccattccctgatcctctcagcctgtgacaaccacttatatacttcctgtctttattgacatacctattctggaaagttcat
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5115101 373 +   5160157 gagaacgggtcttgcgctgtcatgctcattggagtgcagtggagcgatcatagcttgctgcagtgatcatagctcgctgcagccttgaagtcctgggctc-aagcagtcctgcttcagcctcccgagtaactgggagtacaggtgcatgccaccatgccgagctaaattttccctttagaagcgtgtgattctttggttttttgtgtgtatacggttttgca---atcaccattgtctgac--cagaacattttcatcaccccccgaaaaaagtgccatacccattaacagtcactcaccgttccttgctcctctcagcctgtggcaaccacttatatacttcctgtctttattgacatacctattctggaaagttcat
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20326248 372 -  24206276 gagaacgggtcttgcgctgtcatcctcattggagtgcggtggagcgatcatagctcgctgcagtgatcatagctcgctgcagccttgaagtcctgggctc-aagcagtcctgcttcagcctcctgagtaactgggagtacaggtgcatgccaccacgccgagctaaattttccctttagaagcgtgtgattctttggtttttcatgtgtatacagttttgca---atcaccattgtctgac--cagaacattttcatca-cccccaaataaagtgccatacccattagcagtcacttgccattccctgatccactcagcctgtgacaaccacttatatacttcctgtctttattgacatacctattctggaaagttcat
i chlSab2.chr29             C 0 I 2647
s manLeu1.NW_012105520v1      1078705 372 +   1458659 gagaacgggtcttgcgctgtcatcctcattggagtgcggtggagcgatcatagctcgctgcagtgatcatagcttgctgcagccttgaagtcctgggctc-aagcagtcctgcttcagcctcccaagtaactgggagtacaggtgcatgccaccacaatgagctaaattttccctttagaagcgtgtgattctttggtttttcgtatgtatacagttttgca---atcaccattgtctgac--cagtacattttcatca-cccccaaataaagtgccatacccattagcagtcacttgccattccctgatcctctcagcctgtgacaaccacttatatacttcctgtctttattgacatacctattctggaaagttcat
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       284715 354 +   4111199 gagaacgggtcttgcgctgtcatcctcgttggagtgcggtggagc-------------------gatcatggctcactgcagccttgaagtcctgggctc-aagcagtcctgcttcagcctcccgagtgactgggagtacaggtgcatgccaccacgctgagctaaattCTccctttaaaagcgtgtgattctttggttttttgtgtgtatacagttttgca---atcaccattgtctgac--cagaacattttcatcaccccccgaaaaaagtgccatacccattagcagtcactctccattccctgatcctctcagcctgtgacaaccacttatatacttcctgtctttgttgacatacctattctggaaagtttat
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      3033826 358 -  42888418 gaaaacgggtcttgcattgtcatccttgttggagtgctgtggagt-------------------gatcatagctcactatagctttgaagtcctgggctc-aggcaatgctgccttggtctcttgagtaactgggaatacaggcgtatgccaccatgccgagcTaaattctcccttttaaaatgtgtgattctttggtttttagtatgtgtacagttgtgcaatcatcaccattatctgacttcagaacattttcatca-ccccccaaaaaagcaccatacccattggcagtcacttactattccctgctcctttcagcctgtggcaaccacttacatactttctgtctttattgatatacctattctggaaagttcat
i aotNan1.NW_018505940v1    I 39 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e panPan2.chr15              83388120 2328 +  99763055 I
e saiBol1.JH378276            2841307   0 +   3282555 I
e panTro5.chr15              66154258 2330 +  83230942 I

a score=18680.000000
s hg38.chr15_KI270850v1_alt    156196 6 +    430880 atatat
s gorGor5.CYUI01015946v1       255666 6 +    378907 atatat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101787447 6 + 121039945 atatat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106480811 6 - 171882078 atatat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6197979 6 +   6271500 gtatat
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5115474 6 +   5160157 atatat
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1079077 6 +   1458659 atatat
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       285069 6 +   4111199 atatat
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      3034184 6 -  42888418 atatat
i aotNan1.NW_018505940v1    C 0 I 38799
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e panPan2.chr15              83388120 2328 +  99763055 I
e chlSab2.chr29              20326620 2647 -  24206276 I
e saiBol1.JH378276            2841307 0 +   3282555 I
e panTro5.chr15              66154258 2330 +  83230942 I

a score=8737.000000
s hg38.chr15_KI270850v1_alt    156202 4 +    430880 gtat
s gorGor5.CYUI01015946v1       255672 4 +    378907 atat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101787453 4 + 121039945 atat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106480817 4 - 171882078 atat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6197985 4 +   6271500 atat
i macNem1.NW_012011056v1    C 0 I 2629
s cerAty1.NW_012001384v1      5115480 4 +   5160157 gtat
i cerAty1.NW_012001384v1    C 0 I 2639
s manLeu1.NW_012105520v1      1079083 4 +   1458659 atat
i manLeu1.NW_012105520v1    C 0 I 2700
s colAng1.NW_012116021v1       285075 4 +   4111199 atat
i colAng1.NW_012116021v1    C 0 I 2615
e aotNan1.NW_018505940v1      3034190 38799 -  42888418 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e panPan2.chr15              83388120 2328 +  99763055 I
e chlSab2.chr29              20326620 2647 -  24206276 I
e saiBol1.JH378276            2841307 0 +   3282555 I
e panTro5.chr15              66154258 2330 +  83230942 I

a score=4298.000000
s hg38.chr15_KI270850v1_alt    156206 22 +    430880 gatatatatgatgtatatatga
s gorGor5.CYUI01015946v1       255676 22 +    378907 gatatatatgatgtatatatga
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101787457 19 + 121039945 -atatatat-atatatatat-a
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106480821 19 - 171882078 ---aaagttcatgtatatataa
i macFas5.chr7              C 0 I 2606
e aotNan1.NW_018505940v1      3034190 38799 -  42888418 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e panPan2.chr15              83388120 2328 +  99763055 I
e colAng1.NW_012116021v1       285079 2615 +   4111199 I
e manLeu1.NW_012105520v1      1079087 2700 +   1458659 I
e chlSab2.chr29              20326620 2647 -  24206276 I
e cerAty1.NW_012001384v1      5115484 2639 +   5160157 I
e macNem1.NW_012011056v1      6197989 2629 +   6271500 I
e saiBol1.JH378276            2841307  0 +   3282555 I
e panTro5.chr15              66154258 2330 +  83230942 I

a score=1770.000000
s hg38.chr15_KI270850v1_alt    156228 47 +    430880 tgtatatatgatgtatgtggtatatatatgatagatatcatatgata
s gorGor5.CYUI01015946v1       255698 27 +    378907 tgtat-----------gtggtata---------gatatcatatgata
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101787476 43 + 121039945 tatatatatgtaaaagttcatgtatatat----aaaatcatgcaata
i nomLeu3.chr6              C 0 I 3147
e aotNan1.NW_018505940v1      3034190 38799 -  42888418 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e panPan2.chr15              83388120 2328 +  99763055 I
e colAng1.NW_012116021v1       285079 2615 +   4111199 I
e manLeu1.NW_012105520v1      1079087 2700 +   1458659 I
e chlSab2.chr29              20326620 2647 -  24206276 I
e cerAty1.NW_012001384v1      5115484 2639 +   5160157 I
e macNem1.NW_012011056v1      6197989 2629 +   6271500 I
e macFas5.chr7              106480840 2606 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I
e panTro5.chr15              66154258 2330 +  83230942 I

a score=172221.000000
s hg38.chr15_KI270850v1_alt    156275 2066 +    430880 tcatatatatcatgatat-atatatcatatgatatatatatcatatgatatcatatatatcatgatatatatatcatatgatatatatatcatatgatatatatcatatgatatcatatataatatatctatcatatc-tatcatatataatatatctaccatatgatatcatatatctcatgatatcatatatctcatgatatatatcatgatatatatctcatatatcatatgatatatgatatataatttttgtaaatatatatgatatatcatatatatttgatatatatgatatatatgaaaaatatatatcatatatgatatataattttatatatttatatatagaaatttatatatataaagttatatataatatataattatatatatataaaagttcatgtatatataaaatcatgcaatacacggccttttgtgactggcttctttaatttagcatagtgttttcaagattcactcatgttagaacatgaatcagtaccttgttctttttattaatgaatgacagtccaatgactggttacatcacattttacttatccattcaccagttgatgggcagttgagttgtttccacttttggtctattatgcataatgctgctgtgaacagcaagttctggtgaagacatatgttttcatttctcttgggtatatacctaagagtagaattgcttgggtgtatgataactgtgtttaacattttgagaaattggaaaactgttttccacagtggctgcaccattttacattcctaccagcagtgtataaggacttcagtgtttccatgtgcttgccaacacatgttatctgactttctgatctatagccaccctaatgggcgtgaagtgatacctcattgtggttttgattgcatttcccaaatggcaaatgattttgagcatctttttatgtgcttattggccgtttttccgtatctttggagaaatgcctattcacatcctttgcctgtttttaaattgggttgtcttattgaactgtaagggttctttgcatattctgactacaggtcccttatcagatacatgacttgcaaaaattatctctcattctgtgggttgtcatttcacttccttgatgctatcctttcaagcaaaattttcagttttgataatgttctgttgttgatttttttttggcatcatatctaagaacaattctttgcctaacccagagtcacagagatttactcctatgttttcttctagaaattttataggtttagctcttacatttaggtatgtaatgtgagagttcatttttgtgtgttttgtaagggaagagtccaacttttttcttttgcatgtggatctctagatgttccagaagcatttgttgaaaagactgttctttccccaattgaattgtcttgggcatcgttgttgaaattgatcataaatgtgaggaattttttctggatgctgaatttgattcctttcatttaggttgtctttgatttctttcaacagtgttttgtagtgttcattgtataaacttggtactttcttgaaatttgttgcttatgattttattcattttgatgcgattgttaattttgttatcttaattgttcagtttttgattgttcattgattatatatagaaatactattgatttttgcataccggtctctgaaactgtagccttgtttcagaggtcaattatagactataatctggcttgtttgtttggcaacagctcttaagtggatgccttaggattttctatgtacaggatgaagtagttggagatcgttttcttcctttccaatctggatgccttttatttctttttcttgcctaatcgccctgagaagcatctctggtacaacattgaatggaagtggtgagcacaaacatccttgtcttgctactgatcttaaagagaaagcatccaagctttccccattaagtatgatgttgttaggtgtgggtttttcacaggtaccttttgttagatgaggacgttcccttctattcctactttgaccatttttatgatgaaaacgtgttggatttt
s gorGor5.CYUI01015946v1       255725 1982 +    378907 tcatatatat----atatcatatatcat----catatatatcatatgatatcatatatatcat----------------------------atatcatatatatcatatgatatcatatatcatatat--atcatatgatatcatatatcatatatatatcatatgatatcatatatc----------atatatatcat----------atcatatatatctcatatatcatatgatatatgatatataatttttgcaaatatatatgatatatcatatatatttgatatat--gatataaataaaaaa-----atcatatatgatata--attttatatatttatatata--aatttatatatataa--ttatatata---------------tatataAAAGTTCATGtatatataaaatcatgcactacacggccttttgtgactggcttctttaatttagcatagtgttttcaagattcactcatgttagaacatggatcagtaccttgttctttttattaatgaatgacagtccagtgactggatacatcacattttacttatccattcaccagttgatgggcagttgagttgtttccacttttggtctattatgcataatgctgctgtgaacagcaagttctggtgaagacatatgttttcatttctcttgggtatatacctaagagtagaattgcttgggtgtatgataactgtgtttaacattttgagaaattggaaaactgttttccacagtggctacaccattttacattcctaccagcagtgtataaggacttcagtgtttccatgtgcttgccaacacatgttatctgactttctgatctatagccaccctaatgggcgtgaagtgatacctcattgtggttttgattgcatttcccaaatggctaatgattttgagcatctttttgtgtgcttattggccgtttttccttatctttggaggaatgcctattcacatcctttgcctgtttttaaattgggttgtcttattgaattgtaagggttctttgtatattctgactacaggtcccttatcagatacatgatttgcaaaagttatctctcattctgtgggttgtcatttcacttccttgatgctatcctttcaagcaaaattttcagttttgataatgttctgttgttgatttttttttggcatcatatctaagaacaattctttgcctaacccagagtcacagagatttactcctatgttttcttctagaaattttataggtttagctcttacatttaggtatgtaatgtgagagttcatttttgtgtgttttgtaagggaagagtccaacttttttcttttgcatgtggatctctagatgttccagaagcatttgttgaaaagactattctttccccaattgaattgtcttgggcatcgttgttgaaattgatcataaatgtgaggaattttttctggatgctgaatttgattcctttcatttaggttgtctttgatttctttcaacagtgttttgtagtgttcattgtataaacttggtactttcttgaaatttgttgcttatgattttattcattttgatgcgattgttaattttgttatcttaatggttcagtttttgattgttcattgattatatgtagaaatactattgatttttgcataccggtctctgaaactgtagccttgtttcagaggtcaattatagactataatctggcttgtttgtttggcaacagctcttaagtggatgccttaggattttctatgtacaggatgaagtagttggagatcgttttcttcctttccaatctggatgccttttatttctttttcttgcctaatcgccctgagaagcatctctggtacaacattgaatagaagtggtgagcgcaaacatccttgtcttgctactgatcttaaagagaaagcatccaagctttcaccattaagtatgaggttgttaggtgtgggtttttcacaggtaccttttgttagatgaggacgttcccttctattcctactttgaccatttttatgatgaaaacgtgttggatttt
i gorGor5.CYUI01015946v1    C 0 C 0
e aotNan1.NW_018505940v1      3034190 38799 -  42888418 I
e cebCap1.NW_016107979v1       794280    0 +   1024465 I
e otoGar3.GL873530           29687845    0 +  36342412 I
e panPan2.chr15              83388120 2328 +  99763055 I
e colAng1.NW_012116021v1       285079 2615 +   4111199 I
e manLeu1.NW_012105520v1      1079087 2700 +   1458659 I
e chlSab2.chr29              20326620 2647 -  24206276 I
e cerAty1.NW_012001384v1      5115484 2639 +   5160157 I
e macNem1.NW_012011056v1      6197989 2629 +   6271500 I
e macFas5.chr7              106480840 2606 - 171882078 I
e nomLeu3.chr6              101787519 3147 + 121039945 I
e saiBol1.JH378276            2841307    0 +   3282555 I
e panTro5.chr15              66154258 2330 +  83230942 I

a score=1230.000000
s hg38.chr15_KI270850v1_alt    158341 9 +    430880 gtcaggtga
s gorGor5.CYUI01015946v1       257707 9 +    378907 gtcaggtga
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106483446 9 - 171882078 gtcagagat
i macFas5.chr7              I 2606 C 0
e aotNan1.NW_018505940v1      3034190 38799 -  42888418 I
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e panPan2.chr15              83388120 2328 +  99763055 I
e colAng1.NW_012116021v1       285079 2615 +   4111199 I
e manLeu1.NW_012105520v1      1079087 2700 +   1458659 I
e chlSab2.chr29              20326620 2647 -  24206276 I
e cerAty1.NW_012001384v1      5115484 2639 +   5160157 I
e macNem1.NW_012011056v1      6197989 2629 +   6271500 I
e nomLeu3.chr6              101787519 3147 + 121039945 I
e saiBol1.JH378276            2841307 0 +   3282555 I
e panTro5.chr15              66154258 2330 +  83230942 I

a score=264880.000000
s hg38.chr15_KI270850v1_alt    158350 66 +    430880 ttgaagatgctacactgctggcttagaacatggaggaaggagcctatgagccacagaatgcagctc
s panTro5.chr15              66156588 66 +  83230942 ttgaagatgctacactgctggcttagaacatggaggaaggagcccatgagccacagaatgcagctc
i panTro5.chr15             I 2330 N 0
s panPan2.chr15              83390448 66 +  99763055 ttgaagatgctacactgctggcttagaacatggaggaaggagcccatgagccacagaatgcagctc
i panPan2.chr15             I 2328 C 0
s gorGor5.CYUI01015946v1       257716 66 +    378907 ttGAAGATGCTacactgctggcttagaacatggaggaaggagcccatgagccacagaatgcagctc
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106483455 66 - 171882078 ttgaggatgctacactgctggcttagaacatggaagaaggaggccatgagccacggaatgcagctc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6200618 66 +   6271500 ttgaggatgctacactgctggcttagaacatggaagaaggaggccatgagccacggaatgcagctc
i macNem1.NW_012011056v1    I 2629 C 0
s cerAty1.NW_012001384v1      5118123 66 +   5160157 ttgaggatgctacactgctggcttagaacatggaagaaggaggccatgagccacggaatgcagctc
i cerAty1.NW_012001384v1    I 2639 C 0
s chlSab2.chr29              20329267 66 -  24206276 ttgaggatgctacactgctggcttagaacatggaagaaggaggccatgagccacggaatgcagctc
i chlSab2.chr29             I 2647 C 0
s manLeu1.NW_012105520v1      1081787 66 +   1458659 ttgaggatgctacactgctggcttagaacatggaagaaggaggccatgagccacggaatgcagctc
i manLeu1.NW_012105520v1    I 2700 C 0
s colAng1.NW_012116021v1       287694 66 +   4111199 ttgaggatgctacactgctggcttagaacatggaagaaggagaccatgagcaatggaatgcagctc
i colAng1.NW_012116021v1    I 2615 C 0
e aotNan1.NW_018505940v1      3034190 38799 -  42888418 I
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e nomLeu3.chr6              101787519 3147 + 121039945 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=348584.000000
s hg38.chr15_KI270850v1_alt    158416 116 +    430880 tagaagctggaaatagcaaaagaacactttctccacatagagactctagaaggaacacagccctgctggcactttgatttttaaacaa-gtgaaagtcattttggacttttgacttc
s panPan2.chr15              83390514 117 +  99763055 tagaagctggaaatagcaaaagaacactttctccacatagagactctagaaggaacacagccctgctggcaccttgatttttaaacaaagtgaaagtcattttggacttctgacttc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       257782 116 +    378907 tagaagctggaaatagcaaaagaacactttctccacatagagactctagaaggaacacagccctgctggcaccttgatttttaaacaa-gtgaaagtcattttggacttttgacttc
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106483521 114 - 171882078 tagaagctggaaatggcaaaagaacactttctccacac--agactctagaaggaacacagccctgccagcgccttgaattttaaacaa-atgaaagtcatttcggacttctgacttc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6200684 114 +   6271500 tagaagctggaaatggcaatagaacactttttccacac--agactctagaaggaacacagccctgccagcgccttgaattttaaacaa-atgaaagtcatttcagacttctgacttc
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5118189 114 +   5160157 tagaagctggaaatggcaaaagaacactttctccacac--agactctagaaggaacacagccctgccagcgccttgaattttaaacaa-atgaaagtcatttcggacttctgacttc
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20329333 116 -  24206276 tagaagctggaaatggcaaaagaacactttctccacacaaagactctagaaggaacacagccctgccagcgccttgaattttaaacaa-atgaaagtcatttcggacttctgacttc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1081853 114 +   1458659 tagaagctggaaatggcaaaagaacactttctccacac--agactctagaaggaacacagccctgccagcgccttgaattttaaacaa-atgaaagtcatttcggacttctgacttc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       287760 116 +   4111199 tagaagctggaaatggcaaaagaacactttctccacacagagactctagaaggaacacagccctgtcagcgccgtgaattttaaacaa-atgaaagtcatttcggacttctgacttc
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018505940v1      3034190 38799 -  42888418 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e nomLeu3.chr6              101787519 3147 + 121039945 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=584306.000000
s hg38.chr15_KI270850v1_alt    158532 157 +    430880 cagaaatgataacatgataataaatttgtgttgtcttaagccactgagtttgtgataatttgttgttaacagcaataggaaactaataGAGTAGTAGTTTGGGGAAATTAGTGATAAAGGATAATTGGGTAGGAGAGGATAAATGTAGTTAGGTCAG
s panPan2.chr15              83390631 156 +  99763055 cagaaatgataatatgataataaatttgtgttgtctgaagccactgagtttgtgataattttttgc-aacagcagtagaaaactaataGAGTAGTAGTTTGAGAAAATTAGTGATAAAGGATAATTGGGAAGGAAAGGATAAATGCAGTTAGGTCAG
i panPan2.chr15             C 0 I 37362
s gorGor5.CYUI01015946v1       257898 157 +    378907 cagaaatgataacatgataataaatttgtgttgtcttaagccactgagtttgtgatcatttgttgttaacagcaataggaaactaataGAGTAGTAGTTTGGGGAAATTAGTGATAAAGGATAATTGGGAAGGAGAGGATAAATGTAGTTAGGTCAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101790666 156 + 121039945 cagaaatgataatatgataataaatttgtgttgtcttaagccactgagtttgtgatgatttgttgttaacagcaataggaaa-taatGGAGTAGTAGTTTGGGGAAATTAGTGATAAAGGATAATTGGGAAGGAGAGGATAAATGCAGTTAGATCAG
i nomLeu3.chr6              I 3147 C 0
s macFas5.chr7              106483635 156 - 171882078 cagaaatgataatatgataataaatttgtgttgtcttaagccactgagtttgtgataatttgttgt-aacagcaatgtgaaactaataGAATGGTAGTTTGGGAAAATTAGTGATAAAGAATAATTGGCAAGGAGAGGATAAGTGCAGTTAGATCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6200798 156 +   6271500 cagaaatgataatatgataatacatttgtgttgtcttaagccgctgagtttgtgataatttgttgt-aacagcaatatgaaactaataGAATAGTAGTTTGGGAAAATTAGTGATAAAGGATAATTGGGAAGGAGAGGATAAGTGCAGTTAGATCAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5118303 156 +   5160157 cagaaatgataatatgataataaatttgtgttgtcttaagccactgagtttgtgataatttgttgt-aacagcaatgtgaaactaataGAATGGTAGTTTGGGAAAATTAGTGATAAAGAATAATTGGCAAGGAGAGGATAAGTGCAGTTAGATCAG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20329449 156 -  24206276 cagaaatgataatgtggtaatacatttgtgttgtcttaagccactgagtttgtgataatttgttgt-aacagcaatatgaaactaataGAATAGTAGTTTGGGAAAATTAGTGATAAAGGATAATTGGGAAGGAGAGGATAAGTGCAGTTAGATCAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1081967 156 +   1458659 cagaaatgataatatgataatacatttgtgttgtcttaagccactgagtttgtgataatttgttgt-aacagcaatatgaaactaataGAATAGTAGAGTGGGAAAATTAGTGATAAAGGATAATTGGCAAGGAGAGGATAAGTGCAGTTAGATCAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       287876 156 +   4111199 cagaaatgataatatgataataaatttgtgttgtcttaagccactgagtttgtaataatttgttgt-aacagcaatatgaaactaataGAATAGTAGTTTGGGAAAATTAGTGATAAAGGATAATTGGCAAGGAGAGGATAAGTGCAGTTGGATCAG
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018505940v1      3034190 38799 -  42888418 I
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=567426.000000
s hg38.chr15_KI270850v1_alt    158689 125 +    430880 TTTGAGTTCTCTGTGTGTTTCACTGTGT------GTGTTTTGTAACATTTTAGTTTTTCCTAAAACCAAAGGATTAATTGACCTTCAAAAGGCAGCTACTTTTTGATTTTAGTCCGTAACCTTTTATCAAA
s panPan2.chr15              83428149 122 +  99763055 TTTGAGTTCTCTGTATGTTTCACTGTGT------GT--TTTGTAACATTTTAGTTTTTCCTAAAACCAAAGGATTGATTAACCTTCAAAAGGCAGC-ACTTTTTGATGTTAGTCTGTAACCTTTTATCAAA
i panPan2.chr15             I 37362 C 0
s gorGor5.CYUI01015946v1       258055 125 +    378907 TTTGAGTTCTCTGTATGTTTCACTGTGT------GTGTTTTGTAACATTTTAGTTTTTCCTAAAACCAAAGGATTAATTGACCTTCAAAAGGCAGCTACTTTTTGATTTTAGTCCGTAACCTTTTATCAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101790822 125 + 121039945 TTTGCGTTCTCTGTATGTTTCACTGTGT------GTGTTTTGTAACATTTTAGTTTTTCCTAAAACCAAAGGATTGATTGACCTTCAAAAGGCAGCTACTTTTTGATATTAGTCTGTAACCTTTTATCAAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106483791 125 - 171882078 TTTGAGTTCTCTGTATGTTTTACTGTCA------GTGTTTTGTAAGATTTTAGTTTTTCCTAAAACCAAAGGATTGATTGACCTTCAAAAGGCGGCTCCTTTTTGATGTTAGTCTGTAACCTTTTATCAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6200954 125 +   6271500 TTTGAGTTCTCTGTATGTTTTACTGTCA------GTGTTTTGTAACATTTTAGTTTTTCCTAAAACCAAAGGATTGATTGACCTTCAAAAGGCAGCTCCTTTTTGATGTTAGTCTGTAACCTTTTATCAAA
i macNem1.NW_012011056v1    C 0 M 5007
s cerAty1.NW_012001384v1      5118459 125 +   5160157 TTTGAGTTCTCTGTATGTTTTACTGTCA------GTGTTTTGTAAGATTTTAGTTTTTCCTAAAACCAAAGGATTGATTGACCTTCAAAAGGCAGCTCCTTTTTGATGTTAGTCTGTAACCTTTTATCAAA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20329605 125 -  24206276 TTTGAGTTCTCTGTATGTTTTACTGTCA------GTGTTTTGTAACATTTTAGTTTTTCCTAAAACCAAAGGATTGATTGACCTTCAAAAGGCAGCTCCTTTTTGATGTTAGTCTGTAACCTTTTATCAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1082123 131 +   1458659 TTTGAGTTCTCTGTATGTTTTACTGTCATACAGTATGTTTTGTAATATTTTAGTTTTTCCTAAAACCAAAGGATTGATTGACCTTCAAAAGGCAGCTCCTTTTTGATGTTAGTCTGTAACCTTTTATCAAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       288032 125 +   4111199 TTTGAGTTCTTTGTATGTTTTACTGTCA------GTGTTTTGTAACATTTTAGTTTTTCCTAAAACCAAAGGATTGATTGACCTTCAAAAGGCAGCTCCTTTTTGATGTTAGTCTGTAACCTTTTATCAAA
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      3072989 123 -  42888418 TTTAAGTTCTCTGTATGTTTCACTGTCA------GTGTTTTGTAGCATTT--GTTTTTCGTAAAACCAAAAAATTGATTGACTTTCAAAAGGCAGCTACTTTTTGATGTTAGTCTGTAACCTTTTATCAAA
i aotNan1.NW_018505940v1    I 38799 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=533464.000000
s hg38.chr15_KI270850v1_alt    158814 153 +    430880 TCAGTATTTTCCCCAAATAGGGTTGACA-AGAAG-CATTCTAAATTATCTCCTAATAAGTTGTTTTGACTTCAGATATTGAAATTGCAGGCCCGTCTCCC-ACCCATCTCTGTTTTCTCACCTTTTTTGTACGTTTTATAATAAGCC-TTACATTGA
s panPan2.chr15              83428271 154 +  99763055 TCAATATTT-CCCTAAATAGAGTTGACACATAGA-CATTCTAAATTATCTCCTAATAAATTGTTTTGACTTCGGATATTGAAATTGCAGGCCCATCTCCCCACCCATCTCAGTTTTCTCTCTTTTTTTGCATGTTTTGTAATAAGTC-CTACAATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       258180 153 +    378907 TCAATATTTTCCCCAAATAGGGTTGACA-AGAAG-CATTCTAAATTATCTCCTAATAAGTTGTTTTGACTTCAGATATTGAAATTGCAGGCCCGTCTCCC-ACCCATCTCTGTTTTCTCACCTTTTTTGTACGTTTTATAATAAGCC-TTACATTGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101790947 153 + 121039945 TCAATATTTTCCCCAAATAGGGTTGACA-AGAAG-CGTTCTAAATAATCTCCTAATAAGTTGTTTTGACTTCGGATATTGAAATTGCAGGCCCATCTCCC-ACCCATCTCTGTTTTCTCACCGTTTTTGTATGTTTTATAATAAGTC-TTACATTGA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106483916 154 - 171882078 GCAATATTTTCCCCAAATAGGGTTGACA-AGAAGACATTCTAAATTATCTCCTAATAAGTTGTTTTGACCTCGGATGTTGAAATTGCAGGCCCATCTCCC-ACCCATCTCTGTTTTCTCACTTTTTTGGTATGTTTAATAATAAGTC-TTACATTGA
i macFas5.chr7              C 0 I 30
s cerAty1.NW_012001384v1      5118584 154 +   5160157 GCAATATTTTCCCCAAATAGGGTTGACA-AGAAGACATTCTAAATTATCTCCTAATAAGTTGTTTTGACCTCGGATGTTGAAATTGCAGGCCCATCTCCC-ACCCATCTCTGTTTTCTCACTTTTTTGGTATGTTTAATAATAAGTC-TTACATTGA
i cerAty1.NW_012001384v1    C 0 I 426
s chlSab2.chr29              20329730 154 -  24206276 GCAATATTTTCCCCAAATAGGGTTGGCA-AGAAGACATTCTAAATTATCTCCTAATAAGTTGTTTTGACCTCAGATGTTGAAATTGCAGGCCCATCTCCC-ACCCATCTCTGTTTTCTCACTTTTTTGGTATGTTTAATAATAAGTC-TTACATTGA
i chlSab2.chr29             C 0 I 30
s manLeu1.NW_012105520v1      1082254 154 +   1458659 GCAATATTTTCCCCAAATAGGGTTGACA-AGAAGACATTCTAAATTATCTCCTAATAAGTTGTTTTGACCTCGGATGTTGAAATTGCAGGCCCATCTCCC-ACCCATCTCTGTTTTCTCACTTTTTTGGTATGTTTAATAATAAGTC-TTACATTGA
i manLeu1.NW_012105520v1    C 0 I 30
s colAng1.NW_012116021v1       288157 153 +   4111199 GCAATATTTTCCCCAAATAGGGTTGACA-AGAAGACATTCTAAATTATCTCCTAATAAGTTGTTTTGACTTCGGATGTTGAAATTGCAGGCCCATCTCCC-ACCCATCTCTGTTTTCTCACCTTTTT-TTATGTTTTATAATAAGTC-TTACATTGA
i colAng1.NW_012116021v1    C 0 I 30
s aotNan1.NW_018505940v1      3073112 152 -  42888418 TTAATATTTTCCCCAAATAGGGTTGACA-AGTAGATATTCTAAATTATATCCTAATAAATTTTTTTGACTTTGGATATTGAAATTGCAGGCCCATCTCCC-ACCCATCT--GTTTTGTCATTTTTTTTA-ATGTTTTCTAATAAGTCTTTACATTGA
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e macNem1.NW_012011056v1      6201079 5007 +   6271500 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=228244.000000
s hg38.chr15_KI270850v1_alt    158967 108 +    430880 AGTG-TATGTGTCTGT--CTGtctct------------ccctccttcc--cccaccccctccctctccttccccactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAATTACAAAGAA
s panPan2.chr15              83428425 107 +  99763055 Agtg-tgtgtgtgtgtatctgtctgt------------CCCTCCCTCCTGCCCACTCTTTCCC---CATTCCCC--tgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtgtgtAATTACAAAGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       258333 108 +    378907 AGTG-TATGTGTCTGT--CTGtccct------------ccctccttcc--cccaccccctccctctccttccccactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAATTACAAAGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101791100 108 + 121039945 AGTG-TATGTGTCTGT--CTGtcact------------ccctccttcc--cccaccccctccctctccttccccactcTGTAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCATTACAAAGAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106484100 102 - 171882078 AGTG-TATGTGTCTGT--CTGTCCTT------------CCCTCTTTCC--CCCGACCCCGCCCTCTCCTTCCCCACTC------tgtgtgtgtgtgtgtctctgtgtgtgtgtAATTACAAAGAA
i macFas5.chr7              I 30 C 0
s chlSab2.chr29              20329914 116 -  24206276 AGTG-TATGTGTCTGT--CTGTCCTTCCCTCTTCCCCCCCCTCTTTCC--CCCGACCCCGCCTTCTCCTTCCCCACTC----tgtgtgtgtgtgtgtgtctctgtgtgtgtgtAATTACAAAGAA
i chlSab2.chr29             I 30 C 0
s manLeu1.NW_012105520v1      1082438 102 +   1458659 AGTG-TATGTGTCTGT--CTGTCCTT------------CCCTCTTTCC--CCCGACCCCACCCTCTCCTTCCCCACTC------tgtgtgtctgtgtgtctctctgtgtgtgtAATTACAAAGAA
i manLeu1.NW_012105520v1    I 30 C 0
s colAng1.NW_012116021v1       288340 102 +   4111199 AGTG-TATGTGTCTGT--CTGTCCTT------------CCCTCTTTCC--CCCAACCCCTCCCTCTCCTTCCCCACTC------tgagtgtgtgtgtgtgtctctgtgtgtgtAATTACAAAGAA
i colAng1.NW_012116021v1    I 30 C 0
s aotNan1.NW_018505940v1      3073264  90 -  42888418 AGTGTTATGTGTCTGT--CTGTCCCT------------GTCTTTGCCC--CTC---CCCGCCCTCCCCTTCCCCCGCC----------------CCCGTGTGTGTCTGTGTGTAAGTACAAAGAA
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e cerAty1.NW_012001384v1      5118738 426 +   5160157 I
e macNem1.NW_012011056v1      6201079 5007 +   6271500 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=21285.000000
s hg38.chr15_KI270850v1_alt    159075 5 +    430880 GTTGT
s panPan2.chr15              83428532 5 +  99763055 GTTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       258441 5 +    378907 GTTGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101791208 5 + 121039945 GTTGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106484202 5 - 171882078 GTTGT
i macFas5.chr7              C 0 I 266
s cerAty1.NW_012001384v1      5119164 5 +   5160157 GTTGT
i cerAty1.NW_012001384v1    I 426 C 0
s chlSab2.chr29              20330030 5 -  24206276 GTTGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1082540 5 +   1458659 GTTGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       288442 5 +   4111199 GTTGT
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      3073354 5 -  42888418 GTTGT
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e macNem1.NW_012011056v1      6201079 5007 +   6271500 M
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=420785.000000
s hg38.chr15_KI270850v1_alt    159080 122 +    430880 AAAGGCCTTTTAAAGTAGTTATGATGTGATTTCCCCTCCTTTTAAAAA-ATAAAATATGTTAAGCATAAGTATTAACATCTTAGAGGGCAGGT--AGGTGGAGACTTTGACTTTCTACTTTATCT----
s panPan2.chr15              83428537 122 +  99763055 AAAGGCCTTTTAAAGTAGTTATGATGTGATTTCCCCTCCTTTTTAAAA-ATAAAGTATTTTAAGCGTAAGTAGTAACATCTTAGAGGGCAGGT--AGGTGGAGACTTTGACTTTCTATTTTATCT----
i panPan2.chr15             C 0 I 304
s gorGor5.CYUI01015946v1       258446 122 +    378907 AAAGGCCTTTTAAAGTAGTTATGATGTGATTTCCCCTCCTTTTAAAAA-ATAAAATATGTTAAGCATAAGTATTAACATCTTAGAGGGCAGGT--AGGTGGAGACTTTGACTTTCTACTTTATCT----
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101791213 114 + 121039945 AAAGGCCTTTTA--------ATGATGTGATTTCCCCTCCTTTTAAAAA-ATAAAATATGTTAAGCCTAAGTATTAACATCTTAGAGGGCAGGT--AGATGGAGACTTTGACTTTCTACTTTATCT----
i nomLeu3.chr6              C 0 I 4
s macFas5.chr7              106484473 120 - 171882078 AAAGGCCTTTTAAAGTAGTTATGATGTGGTTTCCCCTCCTTTTTAAAA-ATAAAATATGTTAAGCATAAGTAGTGACATCTTAGAGGGCAGGT--AGGTGGAGAC--TGACTTTCTACTTTATCT----
i macFas5.chr7              I 266 C 0
s cerAty1.NW_012001384v1      5119169 122 +   5160157 AAAGGCCTTTTAAAGTAGTTATGATGTGGTTTCCCCTCCTTTTTAAAA-ATAAAATATGTTAAGCATAAGTAGTAACATCTTAGAGGGCAGAT--AGGTGGAGACTTTGACTTTCTACTTTATCT----
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20330035 115 -  24206276 AAAGGCCTTTTAAAGTAGTTATGATGTGATTTCCCCTCCTTTT------AAAAAATATGTTAAGCATAAGTAGTAACATCTTAGAGGGCAGGT--AGGTGGAGAC--TGACTTTCTACTTTATCT----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1082545 121 +   1458659 AAAGGCCTTTTAAAGTAGTTATGATGCGGTTTCCCCTCCTTTTTAAAAAATAAAATATGTTAAGCATAAGTAGTAACATCTTAGAGGGCAGAT--AGGTGGAGAC--TGACTTTCTACTTTATCT----
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       288447 122 +   4111199 AAAGGCCTTTTAAAGTAATTATGATGTGATTTCCCCTCCTTTTAAAAA-ATAAAATATGTTAAGCATAAGTAGTAACATCTTAGAGGGCAGAT--AGGTGGAGACTTTGACTTTCTACTTTATCT----
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      3073359 128 -  42888418 AAAGGCCTTTTAAAGTCGTTATGATATGATTTCCCCTCCGTTTTAAAA-ATAAAATAGATTAAGCATAAGTGGTAACATGTTAGAGGGCAAGTAAAGAAGTGGACTTTGACTTTCTACTTTTTCTATCT
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e macNem1.NW_012011056v1      6201079 5007 +   6271500 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=3276.000000
s hg38.chr15_KI270850v1_alt    159202 1 +    430880 T
s gorGor5.CYUI01015946v1       258568 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101791331 1 + 121039945 T
i nomLeu3.chr6              I 4 C 0
s macFas5.chr7              106484593 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5119291 1 +   5160157 T
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20330150 1 -  24206276 T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1082666 1 +   1458659 T
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       288569 1 +   4111199 T
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      3073487 1 -  42888418 T
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e panPan2.chr15              83428659 304 +  99763055 I
e macNem1.NW_012011056v1      6201079 5007 +   6271500 M
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=1111860.000000
s hg38.chr15_KI270850v1_alt    159203 316 +    430880 TGAATCGCTTAAGTGTTTACAGTGAGCGTGTTATTTTTATGGTACAT--AGTAATTTTTGATGAAAACATTTTGAAGGCTGAAAAGACTGTCC-----------------------------------------------------------------------------------TGTCTTTTGAAAATAAACCCATCTTTTTGTGCTAATTAACACCGGAGGCCAGCTAAAGCTTTATAATAAAATATTGCATTCAAAATACCTATGAAAGTGGCTAGTTGAAGACTATAATTTGCTTTGAAACGTAGCTTGAAATGGAAATACATTTCTAATAATGAAAGGTGTTGCTTTAGTAATAAATGAAAATAAAATATCCCATTATTATCCCTTCATAGAAAA
s panPan2.chr15              83428963 314 +  99763055 TGAATTGTTTAAATGTTTACAGTGAGCATGTTATTTTTATGATACAT--AGTAATTTTTGATGAAAACATTCTGAAGGCTGAAAAGAATGTCC-----------------------------------------------------------------------------------TGTCTTTTGAAAATAAATCCATCTTT--GTGCTGATTAACACTGGAGGCTAACCAAAGCGTTATAATAAAATATTACATTTAAAACACCTATGAAAGTGGCTAGTTCAAGAATATAATTTGCCTTGAAACATAGCTTGAGATGGAAGTATACTTCTAATAATGAAAGATCTTGCCTTAGTAATAAATGAAAGTAAAATATTCCATTATTGTCCCTTCATAGAAAA
i panPan2.chr15             I 304 C 0
s gorGor5.CYUI01015946v1       258569 316 +    378907 TGAATCGCTTAAATGTTTACAGTGAGCATGTTATTTTTATGGTACAT--AGTAATTTTTGATGAAAACATTTTGAAGGCTGAAAAGAATGTCC-----------------------------------------------------------------------------------TGTCTTTTGAAAATAAACCCATCTTTTTGTGCTAATTAACACTGGAGGCCAGCCAAGGCTTTATAATAAAATATTGCATTCAAAATACCTATGAAAGTGACTCGATGAAGAATATAATTTGCTTTGAAACGTAGCTTGAAATGGAAATACATTTCTAATAATGAAAGGTGTTGCTTTAGTAATAAATGAAAATAAAATATCCCATTATTATCCCTTCATAGAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101791332 314 + 121039945 TGAATCTCTTAAATGTTTACAGTGAGCATGTGATTTGTATAATACAT--AGTAATTTTTGATGAAAACATTCTGAAGGCCGAAAAGAATGTCC-----------------------------------------------------------------------------------TGTCTTTTGAAAATAAACCCATCTTT--GTGCTAATTAACACTGGAGGCCAGCCAAGGCTTTATAATAAAATATTGCATTCCAAACAACTATGAAAGTAGCTAGTTGAAGAATATAATTTGCTTTGAAACGTAGCTTGAAATGGAAATATATTTCTAATAATGAAAGGTGTTGCTTTAGTAATAAATGAAAATAAAATATCCCATTATTATCCCTTCATAGAAAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106484594 316 - 171882078 TGAATCGTTTAAATGTTTACAGTGAGCATATTATTTGTATGATACATAGAGTAATTTTTGATGAAAACATTTTGAAGGCTGAAAAGAATGTCC-----------------------------------------------------------------------------------TGTCTTTTGAAAATAAACCCATTTTG--GTGCTAATTAACTCTGGAGGCCAGCCAAGGCTTTATAATAAAATATTGCATTCAAAACACCTATGAAAGTGGCTAGTTGAAGAATATAATTTGCTTTGAAATATATCTTGAAATGGAAGTATATTTCTAATAATGAAAGATGTTGTTTTAGTAATAAATGAAAATAAAATATCCCGTTATTATCCCTTCATAGAAAA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5119292 314 +   5160157 TGAATCGTTTAAATGTTTACAGTGAGCATATTATTTGTATGATACAT--AGTAATTTTTGATGAAAACATTTTGAAGGCTGAAAAGAATGTCG-----------------------------------------------------------------------------------TGTCTTTTGAGAATAAACCTATCTTT--GTGCTAATTAACACTGGAGGTCAGCCAAGGCTTTATAATAAAATATTGCATTCAAAACACCTATGAAAGTGGCTAGTTGAAGAATATAATTTGCTTTGAAACATATCTTGAAATGGGAGTATATTTCTAATAATGAAAGATGTTGTTTTAGTAATAAATGAAAATAAAATATCCCATTATTATCCCTTCATAGAAAA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20330151 314 -  24206276 TGAATCGTTTAAATGTTTACAGTGAGCATATTATTTGTATAATACAT--AGTAATTTTTGATGAAAACATTTTGAAGGCCGAAAAGAATGTCG-----------------------------------------------------------------------------------TGTCTTTTGAGAATAAACCTATCTTG--GTGCTAATTAACACTGGAGGTCAGCCAAGGCTTTATAATAATATATTGCATTCAAAACACCTATGAAAGTGGCTAGTTGAAGGATATAATTTGCTTTGAAATCTGTCTTGAAATGGAAGTATATTTCTAACAATGAAAGGTGTTGTTTTAGTAATAAATGAAAATAAAATATCCCATTATTATCCCTTCATAGAAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1082667 397 +   1458659 TGAATCGTTTAAATGTTTACAGTGAGCATATTATTTGTATGATACAT--AGTAATTTTTGATGAAAACATTTTGAAGGCTGAAAAGAATGTCTCTCTTATACACATCTAGACATATTATTTGTATGATACATAGTAATTTTTGATGAAAACATTTTGAAGGCTGAAAAGAATGTCCTGTCTTTTGAGAATAAACCTATCTTT--GTGCTAATTAACACTGGAGGTCAGCCAAGGCTTTATAATAAAATATTGCATTCAAAACACCTATGAAAGTGGCTAGTTGAAGAATATAATTTGCTTTGAAACATATCTTGAAATGGGAGTATATTTCTAACAATGAAAGGTGTTGTTTTAGTAATAAATGAAAATAAAATATCCCATTATTATCCCTTCATAGAAAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       288570 313 +   4111199 TGAATCCTTTAAATGTTTACAGTGAGCATATTATTTGTATGATGCAT--AGTAATTTTTGAT-AAAACATTTTGAAGGCTGAAAAGAATGTGG-----------------------------------------------------------------------------------TGTCTTTTGAGAATAAACCTATCTTT--GTGCTAATTAACACTGGAGGTCAGCCAAGGCTTTATAATAAAATATTGCATTCAAAACACCTATGAAAGTGGCTAGTTGAAGAATATAATTTGCTTTGAAACATATCTTGAAATGGAAGTATATTTCTAATAATGAAAGGTGTTGATTTAGTAATAAATGAAAATAAAATATTCCATTATTATCCCTTCATAGAAAA
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      3073488 312 -  42888418 TGGATCGTTTAAGTGTTTACACTGAGCATGTTATTTGTATGATGCAT--AGTAATTTTCGATGAAAACATTTTGGAGGCTGAAAAGAATGTCC-----------------------------------------------------------------------------------TCTCTTTTGAAAATAAATCCATCTTT--GTGCTGATTAATACTGGAGGCCAACCAAGGCTTTATAATAAAATGTTACTTTCAAAACACCTATGAAAGTGGCCAGTTCAAGAATATAATTT-CTTTGAAACATAGCTTGAAATGGAATTATACTTATAATAATG-AAGGTATTGCCTTAGTAATAAATGAAAATAAAATTTTCCATTATTGCCCCTTCATAGTAAA
i aotNan1.NW_018505940v1    C 0 I 324
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e macNem1.NW_012011056v1      6201079 5007 +   6271500 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=589591.000000
s hg38.chr15_KI270850v1_alt    159519 160 +    430880 CAAATACAACCCTAAATGACATTTTAATTAACCAGTGATTTTCCTC------TAAAGCTGAGATTTGTTTTTTTAATATGTAGGTAGGATTGGCAAATAGCGTACAGAAATCTGGACATCCTTTGAAGATAATTGTTGGGGTGGAATGGGGGCATAGAGTACTGTT
s panPan2.chr15              83429277 159 +  99763055 CAAATACAACCCTAAATGACATTTTAATTAACTAGTGATTTTCCTC------TAAAGCCGAGATTTGTTTTTTTAAGACCTATGCAGGATTGGCAAGTAGTGTACA-AAATCTGGACATCCTTTGAAGATAATTGTTGGGGTGGGATGGGGGCATAGAGTACTGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       258885 160 +    378907 CAAATACAACCCTACATGACATTTTAATTAACCAGTGATTTTCCTC------TAAAGCTGAGATTTGTTTTTTTAATATGTAGGTAGGATTGGCAAATAGCGTACAGAAATCTGGACATCCTTTGAAGATAATTGTTGGGGTGGAATGGGGGCATAGAGTACTGTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101791646 160 + 121039945 CAAATACAACCCTAAATGACATTTTAATTAACCAGTGATTTTCCTC------TAAAGCTGAGATTTGTTTTTTTAAGACGTAGGTAGGATTGGCAAATAGTGTACAAAAATCTGGACATCCTTTGAAAGTAATTGTTGGGGTGGGATGGGGGCATAGAGTACTGTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106484910 158 - 171882078 CAAATACAACCCTAAATGACATTTTAATTAACCAGTGATTTTCCTC------TAAAGCTGAGA--TGTTTTTTTAAGACCTAGGTAGGATTCACAAATAGTGTACAGAAATCTGGACATCATTTGAAGATAATTGTTTGGGTGGGATGGAGGCATAGAGTACTGTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5119606 158 +   5160157 CAAATACAACCCTAAATGACATTTTAATTAACCAGTGATTTTCCTC------TAAAGCTGAGA--TGTTTTTTTAAGACCTAGGTAGGATTGGCAAATAGTGTACAGAAATCTGGACATCATTTGAAGATAATTGTTTGGGTGGGATGGAGGCATAGAGTACTGTT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20330465 158 -  24206276 CAAATACAACCCTAAATGACATTTTAATTAACCAGTGATTTTCCTC------TAAAGCTGAGA--TGTTTTTTTAAGACCTAGGTAGGATTGGCAAATAGTGTACCGAAATCTGGACATCATTTGAAGATAATTGTTTGGGTGGGATGGAGGCATAGAGTACTGTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      1083064 158 +   1458659 CAAATACAACCCTAAATGACATTTTAATTAACCAGTGATTTTCCTC------TAAAGCTGAGA--TGTTTTTTTAAGACCTACGTAGGATTGGCAAATAGTGTACAGAAATCTGGACATCATTTGAAGATAATTGTTTGGGTGGGATGGAGGCATAGAGTACTGTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       288883 158 +   4111199 CAAATACAACCCTAAATGACATTTTAATTAACCAGTGATTTTCCTC------TAAAGCTGAGA--TGTTTTTTTAAGACCTAGGTAGGATTGGCAAATAGTGTACAGAAATCTGGACATCATTTGAAGATAATTGTTTGGGTGGGATAGAGACATAGAGTACAGTT
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1      3074124 166 -  42888418 CAAATACAACCCTAAATGACGTTTTCATTAACCAGTGATTTTCCTCTAGAGGTAAAGCTGAGATTTGTTTTTTTAAGACCTAGGTAGGATTGGCAAATAGCATACAGAAATCTGGACATCCTTTTAATATAATTGTTGGGGTGGGATGCGGGCATAGAGTACTGTT
i aotNan1.NW_018505940v1    I 324 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e macNem1.NW_012011056v1      6201079 5007 +   6271500 M
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=2383355.000000
s hg38.chr15_KI270850v1_alt    159679 541 +    430880 TTATTGTGTTCATTTTTATTAATGAAACT--GAATTTAGACCAAGCAGTGATTTCAAAGTGGAAGATGGAACAGGATGTTTAGTAGGTTTTGTAGACTGTTTTTGTAAAAGGCTTTGGTGCAGAACCTTTCATAAAATGAAATATTTTTTCAGCATGTCTGTTATTTACTTTTAGAATTCAGAGCAAGGGTTCTTGTTTGAAGAACTACAAACCTTTATTGACTCCAGATTTGACTCAGCTCTTTTATA------TTTTCTTTCTCACTGATAAGGGAAGGTACTTTATAAAGTAGATTTGTCATTAAAAAAGAAAAAAAGACTACATTTACCTGGTCAGAAGTTCTTTTGGGTTTAAAGAAAAAGATTGCAGCCCAGGTTGCAACAAATGGTCTGACAGTTATAATATGTTCCACCtttctt-tt----------ttttt--tttttttttgttttgagatagagtctcactcttttgtccaggctgaag-tgcagtggcacaatcacagcttagtgcagccttgacctcccaggctcaagtgatccttctacctcagcctc
s panPan2.chr15              83429436 552 +  99763055 TTATTGTGTTCATTTTTATTAATGAAACTCTGAATTTAGACCAAGCAGTGATTTCAGAGTGGAAGATGGAACAGGATGTTTAGTGGGTTTTGTATACTATTTTTGTAAAAGGCTTTGGTGCAGAATCTTTCATAAAATGAAATCTTTTTTCAGCATGTCTGTTATTTATTTTTAGAATTCACAGCAAGGGTTCTTGTTTGAAGAACTACAAACCTTTATTGACTCCAAATTTGACTCAGCTCTGTTATATTTTCCTTTTCTTTTTCACTGATAAGGGAGGGTACTTTATAAAGTAGATTTGTCATTAAAAAAGAATAA-----TACATTTACCTGATCAGAAGTTCTTTTGGGTTTAAAGAAAAAAATTGCAGCCCAGATTGCAACAAATGGTCTG--AGTTATAATATGTTATGtctttctt-tttctttctctcttttt--ttttgttttgttttgagacagagtctcactcttttgtccaggctgaag-tgcaatggcacaatcacagatcattgcaggcttgacttcccaggctgaagttattcttatacctcagcctc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       259045 549 +    378907 TTATTGTGTTCATTTTTATTAATGAAACT--GAATTTAGACCAAGCAGTGATTTCAAAGTGGAAGATGGAACAGGATGTTTAGTAGGTTTTGTATACTGTTTTTGTAGAAGGCTTTGGTGCAGAACCTTTCATAAAATGAAATATTTTTTCAGCATGTCTGTTATTTACTTTTAGAATTCAGAGCAAGGGTTCTTGTTTGAAGAACTACAAACCTTTATTGACTCCAGATTTGACTCAGCTCTTTTATATTTTCCTTTTCTTTCTCACTGATAAGGGAAGGTACTTTATAAAGTAGATTTGTCATTAAAAAAGAAAAAAAGACTACATTTACCTGGTCAGAAGTTCTTTTGGGTTTAAAGAAAAAGATTGCAGCCCAGGTTGCAACAAAT-GTCTGACAGTTATAATATGTTACATCTGTCtt-ttttg-------ttgtt--gttgtttttgttttgagacagagtctcactcttttgtccaggctgaag-tgcagtggcacaatcacagcttagtgcagctttgacctcccaggctcaagtgatccttctacctcagcctc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101791806 541 + 121039945 TTATTCTGTTCATTTTTATTAAAGAAACTGTGAATTTAGACCAAGCAGTGATTTCAGAATGGAAGATGGAACAGGGTGTTTAATGGGTTTTGTATACTATTTTTGTAAAAGGCTTTGGTGCAGAATCTTTCATAAAATGAAATCTTTTTTCAGCATATCTGTTACTTACTTTTAGAATTCACAGCAAGGGTTCTTGTTTGAAGAACTACAAACCTTTATTGACTCCAGATTTGACTCAACTCTTTTATATTTTCCTTTTCTTTCTCAGTGATAAGGGAAGGTACTTTATAAAGTAGATTTTTCGTTAAAAAAGAAAAAAAGACTACATTTACCTGGTCAGAAGTTCTTTTGGGTTTAAGGAAAAAAATTGCAGCCCAGGTTGCAACAAATGGTCTGACAGTTATAATATGTTACATCtttctt-tt----------tt----------tgttgttttgaggcagagtctcactcttttgtccaggctgaag-tgcagtggcacaatcacagcttagtgcagccttgacctcccaggctcaagtgatccttctacctcagcctc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106485068 546 - 171882078 TTACTGTGTTCATTTTTATTAATGAAACTGTGAATTTAGACCAAGTAGTGATTTCAGAGTGGAAGATGGAACAGGATGTTTAGTGGGTTTTGTATACTATTTTTGTAAAAGGTTTTGATGCAGAATCTTTCATAAAATGAAATCTTTTTTCAACATGCCTGTTATTTACTTTTAGAATTCGTGGAAAGGGTTCTTGTCTGAAGAGCTGCAAACCTTTATTGACTCCAGATTTGACTCAGCTCTTTTGTATTTTCCTTTTCTTTCTCACTGGTAAGGGAAGGTACTTTATAAAGTAGATTCTTCATTAA-----AAAAAAAGACTATATTTACCTGGTCAGAAGTTCTTTTGGGTTTAAAGAAAAAAATTGCAGCCCAGGTTGCAACAAATGGTCTGACAGTTATAATGTGTTACATCtttttt-gt----------ttgtttgtttgtttttgttttgagacagagtgccactcttttgtccagactgaag-tgcagtggcacagtcacagcttagtgtagccttgacctcccaggctcaagtgatccttctacttcagcctc
i macFas5.chr7              C 0 I 20168
s macNem1.NW_012011056v1      6206086 551 +   6271500 TTACTGTGTTCATTTTTATTAATGGAACTGTGAATTTAGACCAAGTAGTGATTTCAGAGTGGAAGATGGAACAGGATGTTTAGTGGGTTTTGTATACTATTTTTGTAAAAGGTTTTGATGCAGAATCTTTCATAAAATGAAATCTTTTTTTAACATGCCTGTTACTTACTTTTAGAATTCGTGGAAAGGGTTCTTGTCTGAAGAGCTGCAAACCTTTATTGACTCCAAATTTGACTCAGCTCTTTTGTATTTTCCTTTTCTTTCTCACTGATAAGGGAAGGTACTTTATAAAGTAGATTCTTCATTAAAAGAGAAAAAAGGACTATATTTACCTGGTCAGAAGTTCTTTTGGGTTTAAAGAAAAAAATTGTAGCCCAGGTTGCAACAAATGGACTGACAGTTATAATGTGTTACATCtttttt-gt----------ttgtttgtgtgtttttgttttgagacagagtgtcactcttttgtccagactgaag-tgcagtggcacagtcacagcttagtgtagccttgacctcccaggctcaagtgatccttctccttcagcctc
i macNem1.NW_012011056v1    M 5007 N 0
s cerAty1.NW_012001384v1      5119764 552 +   5160157 TTACTGTGTTCATTTTTATTAATGAAACTGTGAATTTAGACCAAGTAGTGATTTCAGAGTGGAAGATGGAACAGGATGTTTAGTGGGTTTTGTATACTATTTTTGTAAAAGGTTTTGATGCAGAATCTTTCATAAAATGAAATCTTTTTTCAACATGCCTGTTATTTACTTTTAGAATTCGTGGAAAGGGTTCTTGTCTGAAGAGCTACAAACCTTTATTGACTCCAGATTTGACTCAGCTCTTTTGTATTTTCCTTTTCTTTCTCACTGATAAGGGAAGGTACTTTATAAAGTAGATTCTTCATTAAAAAAGAAAAAAAGACTATATTTACCTGGTCAGAAGTTCTTTTGGGTTTAAAGAAAAAAATTGTAGCCCAGGTTGCAACAAATGGTCTGACAGTTATAATATGTTACATCttttttcgt----------ttgtttgtttgtttttgttttgagacagagtgtcactcttttgtccagactgaag-tgcagtggcacagtcacagcttagtgtagccttgacctcccaggctcaagtgatccttctacttcagcctc
i cerAty1.NW_012001384v1    C 0 I 8871
s chlSab2.chr29              20330623 547 -  24206276 TTATTGTGTTCATTTTTATTAATGAAACTGTGAATTTAGACCAAGTAATGATTTCAGAGTGGAAGATGGAACAGGATGTTTAGTGGGTTTTGTATACTATTTTTGTAAAAGGTTTTGATGCAGAATCTTTCATAAAATGAAATCTTTTTTCAACATGCCTGTTATTTACTTTTAGAATTCGTGGAAAGGGTTCTTGTCTGAAGAGCTACAAACCTTTATTGACTCCAAATTAGACTCAGCTCTTTTGTGTTTTCCTTTTCTTTCTCACTGATAAGGGAAGGTACTTTATAAAGTAGATTCTTCATTAAAAAAGAAAAAAAGACTATATTTACCTGGTCAGAAGTTCTTTTGGGTTTAAAGAAAAAAATTGTAGCCTAGGTTGCTACAAATGGTCTGACAGTTATAATGTGTTACATCttt-----t----------ttgtttgtttgtttttgttttgagacagagtgtcactcttttgtccagactgaag-tgcagtggcacaatcacaacttagtgtagccttgacctcccaggctcaagtgatccttctacttcagcctc
i chlSab2.chr29             C 0 N 0
s manLeu1.NW_012105520v1      1083222 552 +   1458659 TTATTGTGTTCATTTTTATTAATGAAACTGTGAATTTAGACCAAGTAGTGATTTCAGAGTGGAAGATGAAACAGGATGTTCAGTGGGTTTTGTATACTATTTTTGTAAAAGGTTTTGATGCAGAATCTTTCATAAAATGAAATCTTTTTTTAACATGCCTGTTATTTACTTTTAGAATTCATGGAAAGGGTTCTTGTCTGAAGAGCTACAAACCTTTATTGACTCCAAATTTGACTCAGCTCTTTTGTATTTTCCTTTTCTTTCTCACTGATAAGGGAAGGTACTTTATAAAGTAGATTCTTCATTAAAAGAGAAAAAAAGACTATATTTACCTGGTCAGAAGTTCTTTTGGGTTTAAAGAAAAAAATTGTAGCCCAGGTTGCAACAAATGGTCTGACAGTTATAATATGTTACATCtttttttgt----------ttgtttgtttgtttttgttttgagacagagtgtcactcttttgtccagactgaag-tgcagtggcacagtcacagcttagtgtagccttgacctcccaggctcaagtgatccttctacttcagcctc
i manLeu1.NW_012105520v1    C 0 I 8981
s colAng1.NW_012116021v1       289041 547 +   4111199 TTACTGTGTTCATTTTTATTAATGAAACTGTGAATTTAGACCAAGTAGTGATTTCAGAGTGGAAGATGGAACAAGATGTTTAGTGGGTTTTGTATACTATTTTTGTAAAAGGTTTTGATGCAGAATCTTTCATAAAATGAAATCTTTTTTCAACATGCCTGTTATTTACTTTTAGAATTCATGGAAAGGATTCTTGTCTGAAGAACTAGAAACCTTTACTGACTCCAAATTTGACTCAGCTCTTTTATATTTTCCTTTTCTTTCTCACTGATAAGGGAAGGTACTTTATAAAGTAGATTCTTCATTAAAAAAGAAAAAAAGACTATATTTACCTAGTCAGAAGTTGTTTTGGGTTTAAAGAAAAAAATTGTAGCCCAGGTTGCAACAAATGGTCTGATAGTTATAATGTGTTACATCtt-----gt----------ttgtttgtttgtttttgttttgagacagagtctcactcttttgtccagactgaag-tgcagtggcacaatcacagcttagtgtagccttgacctcccaggctcaagtgatccttctacttcagcctc
i colAng1.NW_012116021v1    C 0 I 5764
s aotNan1.NW_018505940v1      3074290 536 -  42888418 TTATTGTGTTCATTTTTATTAATGAAACT--GAATTTAGACCAAGCAAGTAGT----GATGAAAGATGGAACAGGATGTTTAGTGATTTTTGTGTACTATTTTTGTAAAATACTTTGGTGCAGAATCTTTCATAAAATGAAAAATTTTTTCAGCACATCTGTTATTTATTTTTAGAATTCAC-GAGAGGGTTCTTGTTTGAAGAACTACAAACCTTTATTGACTCCAAATTTGACTCAGCTCTTTTATATTTTCCTTTTCTTTCTCACTGATAAGGGAAGGTACTTT-TAAAGTAGATTTGTCATTAAAAAAGAAG--------ACATTTATCTGATTAGAAGTTCTTTCGGGTTTAAAGGAAAAATTTGCAGCCCAGTTTGCAACAAATGGTCTGACAGTTATAATATGTTACGTCtttatt-tt----------tctctttctttttttttttttaagacagagtcttactcttttgtccaggctaaagttacagtggtgcaatcatagctcactgcagccttgacctcccaggctcaagtgatccttcttcctcaccctc
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=15123.000000
s hg38.chr15_KI270850v1_alt    160220 19 +    430880 acaagtagcactcaccatc
s panPan2.chr15              83429988 19 +  99763055 ccaagtagcactcaccatc
i panPan2.chr15             C 0 N 0
s gorGor5.CYUI01015946v1       259594 19 +    378907 acaagtagcactcaccatc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101792347 19 + 121039945 acaagtagcactcaccttc
i nomLeu3.chr6              C 0 C 0
s aotNan1.NW_018505940v1      3074826 19 -  42888418 ccaagtaccactcaccatc
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012001384v1      5120316 8871 +   5160157 I
e macFas5.chr7              106485614 20168 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=65635.000000
s hg38.chr15_KI270850v1_alt    160239 142 +    430880 atg-gtggctaa--ttttttttttttttttttttttggagagacggtgtctccctatgtttcccaggctggtctcgaactcctgggctaagtgatccttctgcctc-----cacaaagtgttgggattacaggtgtgagccaccacgcct
s gorGor5.CYUI01015946v1       259613 143 +    378907 atg-gtggctaa------ttttttttttttttttttggagagacggtgtctccctgtgtttcccaggctggtctcgaactcctgggctaagtgatccttctgcctccacttcacaaagtgttgggattacaggtgtgagccaccatgcct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101792366 148 + 121039945 atg-gtggctaattttttttttttttttttttttttggagagatgatgtctccctatgtttcccaggctggtctcgaactcctgggctaagtgatccttctgcctccacttcacaaagtgttgggattacaggtgtgagccaccatgcc-
i nomLeu3.chr6              C 0 C 0
s aotNan1.NW_018505940v1      3074845 150 -  42888418 atgagtggattttcttttttctttctttctttttttgtagagatgatgtctccctgtgtcgcccaggctggtctcgaactcccgggctaagtgatccttctgcctccacttctcaaagtgttggaattacaggcgcgagccaccatgcct
i aotNan1.NW_018505940v1    C 0 N 0
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e otoGar3.GL873530           29687845   0 +  36342412 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012001384v1      5120316 8871 +   5160157 I
e macFas5.chr7              106485614 20168 - 171882078 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=3166.000000
s hg38.chr15_KI270850v1_alt    160381 7 +    430880 agccTCA
s gorGor5.CYUI01015946v1       259756 7 +    378907 ggccTCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101792514 7 + 121039945 ggccTCA
i nomLeu3.chr6              C 0 C 0
s canFam3.chr30                 27256 7 -  40214260 aacctca
i canFam3.chr30             N 0 C 0
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e otoGar3.GL873530           29687845 0 +  36342412 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012001384v1      5120316 8871 +   5160157 I
e macFas5.chr7              106485614 20168 - 171882078 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=8993.000000
s hg38.chr15_KI270850v1_alt    160388 20 +    430880 A-----CAAAAATTGAACTATGTAC
s gorGor5.CYUI01015946v1       259763 20 +    378907 A-----CAAAAGTTGAACTATGTAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101792521 20 + 121039945 A-----CAAAAGTTGAACTAGGTAC
i nomLeu3.chr6              C 0 C 0
s canFam3.chr30                 27263 25 -  40214260 aacatgcacaagttgaatagtgtgg
i canFam3.chr30             C 0 I 10
s dasNov3.JH569975                857 20 -   2180720 a-----caaaagttgaacaatattg
i dasNov3.JH569975          N 0 C 0
e cebCap1.NW_016107979v1       794280  0 +   1024465 I
e otoGar3.GL873530           29687845  0 +  36342412 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012001384v1      5120316 8871 +   5160157 I
e macFas5.chr7              106485614 20168 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=153382.000000
s hg38.chr15_KI270850v1_alt    160408 123 +    430880 ----------TGTAGccaccctcaacagtgataaac---ttttggcaaat--cttatttca-tttatactccacttt-ggattattttg----------aagcagattccagacagatcacttcatctgtaaatatttctgtttgtatct
s gorGor5.CYUI01015946v1       259783 123 +    378907 ----------TGTAGccaccctcaacaatgataaac---ttttggctaat--cttatttca-tttatactccacttt-ggattattttg----------aagcagattccagacagatcacttcatctgtaaatatttctgtttgtatct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101792541 123 + 121039945 ----------TGTAGccagcctcaacaatgataaac---ttttggctaat--cttatttca-tttatactccacttt-ggattcttttg----------acgcagattgcagacagatcacttcatctgtaaatatttctgtttgtatct
i nomLeu3.chr6              C 0 C 0
s proCoq1.NW_012149419v1       623975 121 -   2566024 ----------tgtacccaacctcaacaatggtaatc---ttttggctaat--cttacttcg-tctatactccaccttgggactattttg----------aagcaaattccagacaaatcactttatctgtaaat-tttcagtatgtat--
i proCoq1.NW_012149419v1    N 0 C 0
s otoGar3.GL873530            6738819 135 -  36342412 ----------tgtacccaacctcaacagttttaataaagttctggctaat--cttgtttca-tctatactctttttttatagcaaattgtagatgatttaagtaaattccagacatactactttatctgtaaat-tttcaggatgtgtt-
i otoGar3.GL873530          T 14842 C 0
s mm10.chr9                  55152561 122 + 124595110 ----------TGcacccaggctcagctatgataaac---ttttggccaat--cttatttca-tgtatatgcctatt--ggattaatttg----------aagagtagtctagacatacaattttttctataaagatttcagtatgtgagt
i mm10.chr9                 N 0 C 0
s canFam3.chr30                 27298 125 -  40214260 ----------tgtcttcagcctcatcaatggtcaat---ttttggccaatcaccaatgtca-cctgtaccccacctc-agattagtttg----------aagcaggttcctggtctgtcactccatctgtaaatatttcagtgagtatct
i canFam3.chr30             I 10 C 0
s dasNov3.JH569975                877 135 -   2180720 tgaacctccatgggcccagcctcaacagtgataaacc--ttttggcccat--cttatttcactctgtaccctacctc-tgattattttg----------aaggagatcccagacataccacttcatctgtaattatttcagaatgcaact
i dasNov3.JH569975          C 0 I 21
e cebCap1.NW_016107979v1       794280   0 +   1024465 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012001384v1      5120316 8871 +   5160157 I
e macFas5.chr7              106485614 20168 - 171882078 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=2835.000000
s hg38.chr15_KI270850v1_alt    160531 7 +    430880 -cttgaaa
s gorGor5.CYUI01015946v1       259906 7 +    378907 -cttgaag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101792664 7 + 121039945 -cttgaag
i nomLeu3.chr6              C 0 C 0
s calJac3.chrY                 182404 7 -   2853901 -cctggAT
i calJac3.chrY              N 0 C 0
s otoGar3.GL873530            6738954 7 -  36342412 -ctagaag
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55152683 7 + 124595110 -ataaaag
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 27423 7 -  40214260 -ctaaaaa
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               1033 7 -   2180720 TGTAGAA-
i dasNov3.JH569975          I 21 C 0
e proCoq1.NW_012149419v1       624096 0 -   2566024 C
e cebCap1.NW_016107979v1       794280 0 +   1024465 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012001384v1      5120316 8871 +   5160157 I
e macFas5.chr7              106485614 20168 - 171882078 I
e saiBol1.JH378276            2841307 0 +   3282555 I

a score=237971.000000
s hg38.chr15_KI270850v1_alt    160538 117 +    430880 gta-aagactct-tttaaCCATGGATGAGTGTTTTGATCAAATCAACATGGCTTGTTCATGTCGATACCATTTGCTCAGAGGGGAAAGATTAAGG-GAAAAATGGGGTTGGATTTGAAAT
s gorGor5.CYUI01015946v1       259913 117 +    378907 gta-aagactct-tttaaCCATGGATGAGTGTCTTGATCAAATCAACATGGCTTGTTCATGTCGATACCATTTGCTCAGAGGGGAAAGATTAAGG-GAAAAATGGGGTTGGATTTCAAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101792671 117 + 121039945 gta-aagactat-tttaaCCATGGATGAGTGTTTTGATCAAATCAACATGGCTTGTTCATGTCGATACCATTTGCTCAGAGGGGAAAGATCAAGG-GAAAAAAAGGGTTGGATTTCAAAT
i nomLeu3.chr6              C 0 C 0
s calJac3.chrY                 182411 117 -   2853901 GTA-AAGACTCT-TCTAAACATGGATGAGTGTTTTGATAAAATCAACATGGCTTCTGCATGTCCATACCATTTGTTTAGAAGGGAAAGATCAAGG-GGAAAATGGGGTTGGATTTCAAAT
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       267949 117 -   1024465 GTA-AAGACTCT-TCTAAACGTGGATGAGTGTTTTGATAAAATCAACATGGCTTGTGCATGGCCGTACCATTTGTTTAGAAGGGAAAGATCAAAG-GGAAAATGGGGTTGGATTTCAAAT
i cebCap1.NW_016107979v1    I 75956 I 605
s proCoq1.NW_012149419v1       624096 110 -   2566024 --------ctct-TTTAAACATGGATGAGTGTTTTGATAGAATCTACATGCCTTGTTCATATTGATACCCTTTGCTTAGAAAGGAAAGAGCAAGG-AAAAAATGCAGTTGGATTTCAAGT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6738961 114 -  36342412 ata-atgattct-tttaaaTATGGATGAGTGTTTTGATAAAATCCACATGGCTTGTTCATGTTGATACCATGTACTTAGAAAG--AAGAGCAAGG--CAAAGTACAGTTGCATTTCAGAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55152690  89 + 124595110 -----gtatact-tttaaa-------aTATGTTTTGAT--AATGTATAGGGCCTGCTTTTATAGGTGTAATTTGCTCAGAAGGGAAAAAT----------------GTTGGAATTCAAAT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 27430 114 -  40214260 atagacgacactctttaaGCATAGGTAGGTGT-TTGATAAAATCTACATGGCTTGCTGGTGCCCATACCGCTTGCTTAGAGGGGAAAGAGCAAAGAAAAAAATGAGGTTGGATTT-----
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               1040 109 -   2180720 AGA-TAGACTC--CTTAAACATGAATGAGTGTTTTGATAAAAT------GGCTTGCATATATTGTTATCATTTACTTAGAGGGGAAAGAACAAGG-ACAAAATGGGGTTGGATTTCAAA-
i dasNov3.JH569975          C 0 C 0
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012001384v1      5120316 8871 +   5160157 I
e macFas5.chr7              106485614 20168 - 171882078 I
e saiBol1.JH378276            2841307   0 +   3282555 I

a score=67489.000000
s hg38.chr15_KI270850v1_alt    160655 43 +    430880 GCCAGGACCT-GTCTACTGGGTTTG-----TGATTTGTTATTCTCTAAA
s gorGor5.CYUI01015946v1       260030 43 +    378907 GCCAGGACCT-GTCTACTGGGTTTG-----TGATTTGTTATTCTCTAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101792788 43 + 121039945 GCCAGGACCT-GTCTACTGGGTTTG-----TGATTTGTTATTCTCTAAA
i nomLeu3.chr6              C 0 C 0
s calJac3.chrY                 182528 35 -   2853901 --------------TATTTGGTTTGATTTATGATTTGTTGTTCTCTGAA
i calJac3.chrY              C 0 C 0
s proCoq1.NW_012149419v1       624206 43 -   2566024 GCCAGGAGCT-GTCTGCTGGGTTTG-----TGATTTGTTACTCTCTAAA
i proCoq1.NW_012149419v1    C 0 I 507
s otoGar3.GL873530            6739075 43 -  36342412 GGCAGGAGCT-GTTTACTGGGTTTG-----TGATTTGTTATTCTCTAAA
i otoGar3.GL873530          C 0 I 2
s mm10.chr9                  55152779 44 + 124595110 ACAAGTGCCTGGTCTACTAGGTTTG-----TGACCTGCTATTTTGCACA
i mm10.chr9                 C 0 I 2
s canFam3.chr30                 27544 36 -  40214260 -------CCT-GTCTATTGTGTTTG-----TGAATTGCTATTCTCTAAA
i canFam3.chr30             C 0 I 2
s dasNov3.JH569975               1149 28 -   2180720 ----------------ATGTTTTTG-----TGATTTGATACTCTCTAAA
i dasNov3.JH569975          C 0 I 2
e cebCap1.NW_016107979v1       268066 605 -   1024465 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012001384v1      5120316 8871 +   5160157 I
e macFas5.chr7              106485614 20168 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=25190.000000
s hg38.chr15_KI270850v1_alt    160698 12 +    430880 GTTGTAGCTCTT
s gorGor5.CYUI01015946v1       260073 12 +    378907 GTTGTAGCTCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101792831 12 + 121039945 GTTGTAACTCTT
i nomLeu3.chr6              C 0 C 0
s calJac3.chrY                 182563 12 -   2853901 GTTGTAGCTCtt
i calJac3.chrY              C 0 I 1
s otoGar3.GL873530            6739120 12 -  36342412 GTTATAACTCTT
i otoGar3.GL873530          I 2 I 5
s mm10.chr9                  55152825 12 + 124595110 GTTGTAGGTCAT
i mm10.chr9                 I 2 I 1
s canFam3.chr30                 27582 12 -  40214260 GTTATAGCTCTT
i canFam3.chr30             I 2 C 0
s dasNov3.JH569975               1179 12 -   2180720 GTTGTAACTCTT
i dasNov3.JH569975          I 2 C 0
e proCoq1.NW_012149419v1       624249 507 -   2566024 I
e cebCap1.NW_016107979v1       268066 605 -   1024465 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012001384v1      5120316 8871 +   5160157 I
e macFas5.chr7              106485614 20168 - 171882078 I
e saiBol1.JH378276            2841307  0 +   3282555 I

a score=8031.000000
s hg38.chr15_KI270850v1_alt    160710 7 +    430880 AAAACAA
s gorGor5.CYUI01015946v1       260085 7 +    378907 AAAACAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101792843 2 + 121039945 -----AA
i nomLeu3.chr6              C 0 C 0
s calJac3.chrY                 182576 7 -   2853901 aaaaaaa
i calJac3.chrY              I 1 C 0
s saiBol1.JH378276             481528 7 -   3282555 aaaaaaa
i saiBol1.JH378276          I 78989 C 0
s otoGar3.GL873530            6739137 7 -  36342412 AAAAAAA
i otoGar3.GL873530          I 5 I 142
s canFam3.chr30                 27594 5 -  40214260 --AAAAA
i canFam3.chr30             C 0 I 1
s dasNov3.JH569975               1191 6 -   2180720 -AAACAA
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       624249 507 -   2566024 I
e mm10.chr9                  55152837 1 + 124595110 I
e cebCap1.NW_016107979v1       268066 605 -   1024465 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012001384v1      5120316 8871 +   5160157 I
e macFas5.chr7              106485614 20168 - 171882078 I

a score=-4005.000000
s hg38.chr15_KI270850v1_alt    160717 7 +    430880 AGAAAGG
s gorGor5.CYUI01015946v1       260092 7 +    378907 AGAAAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101792845 7 + 121039945 AGAAAGG
i nomLeu3.chr6              C 0 C 0
s calJac3.chrY                 182583 6 -   2853901 aaaaaa-
i calJac3.chrY              C 0 I 312
s saiBol1.JH378276             481535 6 -   3282555 aaaaaG-
i saiBol1.JH378276          C 0 I 1
s otoGar3.GL873530            6739286 6 -  36342412 -GGAAGG
i otoGar3.GL873530          I 142 I 1
s mm10.chr9                  55152838 5 + 124595110 AGTGT--
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 27600 6 -  40214260 AAAAAT-
i canFam3.chr30             I 1 C 0
s dasNov3.JH569975               1197 4 -   2180720 AAAA---
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       624249 507 -   2566024 I
e cebCap1.NW_016107979v1       268066 605 -   1024465 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012001384v1      5120316 8871 +   5160157 I
e macFas5.chr7              106485614 20168 - 171882078 I

a score=218733.000000
s hg38.chr15_KI270850v1_alt    160724 184 +    430880 AGTGAGTTTGGCCTATTCATTAACTTTTCCTCTTTA---GACAGTT--caaatgtttattgagttcttctacaagccaggcactgccttct-TCTTGC---TTACCAAGAAGCATTTTT-ATGCGGTTTCTCTAATGTTTGGGTGAATGGGACCTCATTAAG---TTGTTTTTC---ACACAGGTGCGTGCTCGTTCCTG
s gorGor5.CYUI01015946v1       260099 184 +    378907 AGTGAGTTTGGCCTATTCATTAACTTTTCCTCTTTA---GACAGTT--CAAATGTTTATTGAGTTCTTCTACAGGCCGAGCCCTGCCTTCT-TCATGC---TTACCAAGAAGCATTTTT-ATGCGGTTTCTCTAATGTTTGGGTGAACGGTACCTCACTAAG---TTGTTTTTC---ACGCACGTGCGTGCTGGTTCCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101792852 184 + 121039945 AGTGAGTTTGGTCTATTCATTAACTTTTCCTCTTCA---GACAGTT--CAAATGTTTATTGAGTTCTTCTACAAGCCAGGCCCTGCCTTCT-TCATGC---TTACCAAGAAGCATTTTT-ATGCGGTTTCTCTAATGTTTGGGTGAATGGTACCTCACTAAG---TTGTTTTTC---ACACATGTGCGTGCTAGTTCCTG
i nomLeu3.chr6              C 0 C 0
s calJac3.chrY                 182901 170 -   2853901 AATGAGTTTGACCTA---TTTAAC-TTTCCTCTTTA---GACAGTT--CTAGTATTTATTGAGTTCTTCTACATGCCAGGCCCTATCTTCT-TTATGC---TTACCCAGAAGCATCCTTAACGGAGTCTCTCTAATATTTGAGAA-----------ACTAGG---TTGTCTTTT---ACACACATAGATGCTAGTTCCTG
i calJac3.chrY              I 312 C 0
s saiBol1.JH378276             481542 176 -   3282555 AGTGAGTTTGACCTATTCTTTAAT-TTTCCTCTTTA---GACAGTT--TaaatatttattgagttcctctacatgccaggccctgtCTTCT-TTATGCTTATTACCAAGAAGCATCCTTAATGGAATTTCTCTAATGTTTGGGAA-----------ACTCGG---TTGTCTTTT---ACACACATGGATGCTAGTTCCTG
i saiBol1.JH378276          I 1 C 0
s otoGar3.GL873530            6739293 179 -  36342412 AATAAGTTTGACCTATTCTTTAACTTTTCCTTTTTA---GACTACT--CAGGTATTTATTTAGCTCCTCTACATGGTGGGCCGTGTGTTCT-TCATGT---CCACCTAGAAGCATCCTT-ATGTAGTTTCTGTCATGTTTGAGTG-----------AATAAGTACTTGTCCTTTGTAACATGCGTGTTAGTTAGTTTCTG
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  55152843 126 + 124595110 AGTGGGCTTAAGTCGTTCTTGAACTTTTCCTCTTTA---CATAGC-----AGTATTTATTAAGCTC-TCTGTACACCAGG--------TTT-CCAAGC---TC-CCAAGCAACATGTGA-ATG-------------------GCA--------------------------------TCGTACTTGTGGACCAGCTTCTG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 27606 178 -  40214260 ACTGAATTTTATCTGTTTTTTGTTTTTTGCTCtt---------attcccagatatttattgagctcctccacgtgctaggccctgtcttTTCCCTTGC---TCACCAGGAAGCATACTT-ACACAGTGTCTTTAACATTTGAGAAAACTGCGCCTCACCCGT------TTCCTT---GCACTCCTGCTTGCCAGTTTCTG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               1201 185 -   2180720 --TGAGTTTGTCCTGTTTTATAACTTTTCCTCTTTAAGTAACAGCT--CAAATATATATTGAAGTCTTCTACATATCAAAGCCTGCTTCCC-TCATGT------GCAAAGAGCATCCCT-ATATAGTTTCTGTAATGTTTGAGTGAGTGGTATCTTACTGGTGGTTGTTTCCTT---ACACGCTTGCATGCCAGATTCTG
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       624249 507 -   2566024 I
e cebCap1.NW_016107979v1       268066 605 -   1024465 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012001384v1      5120316 8871 +   5160157 I
e macFas5.chr7              106485614 20168 - 171882078 I

a score=13773.000000
s hg38.chr15_KI270850v1_alt    160908 3 +    430880 AAG
s panTro5.chr15              17975777 3 -  83230942 AAG
i panTro5.chr15             N 0 C 0
s panPan2.chr15              17202047 3 -  99763055 AAG
i panPan2.chr15             N 0 C 0
s gorGor5.CYUI01015946v1       260283 3 +    378907 AAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101793036 3 + 121039945 AAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65240125 3 + 171882078 AAC
i macFas5.chr7              n 20168 C 0
s chlSab2.chr29               3815439 3 +  24206276 AAG
i chlSab2.chr29             N 0 C 0
s calJac3.chrY                 183071 3 -   2853901 AAG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             481718 3 -   3282555 AAG
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6739472 3 -  36342412 AAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55152969 3 + 124595110 AAT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 27784 3 -  40214260 AAT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               1386 3 -   2180720 AAG
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       624249 507 -   2566024 I
e cebCap1.NW_016107979v1       268066 605 -   1024465 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012001384v1      5120316 8871 +   5160157 I

a score=319850.000000
s hg38.chr15_KI270850v1_alt    160911 64 +    430880 AGTCCTGTCCAGGTGCTCTG-CCTGCTTTTCCTTTCAGGCTTCTGTATCAGCTGC---TGTT-TCCCTA
s panTro5.chr15              17975780 63 -  83230942 AGTCCTGTCCAGGTGCTCTG-CCCGCTTT-CCTTTCAGGCTTCTGTATCATCTAT---TTTT-CCCCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202050 63 -  99763055 AGTCCTGTCCAGGTGCTCTG-CCCGCTTT-CCTTTCAGGCTTCTGTATCATCTAT---TTTT-CCCCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       260286 64 +    378907 AGTCCTGTCCACGTGCTCTG-CCCGCTTTTCCTTTCAGGCTTCTGTATCAGCTGC---CGTT-TCCCTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101793039 64 + 121039945 AGTCCTGTCCAGATGCTCTG-CCCGCTTTTCCTTTCAGGCTTCTGTATCAGCTGC---TGTT-TCCCTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60335468 64 + 169600520 AGTCCTGTACAGGTGCTCTG-CCCACTTTTCCTTTCAGGCTTCTGTATCAGCCGT---TTTT-CCCCTG
i rheMac8.chr7              N 0 C 0
s macFas5.chr7               65240128 64 + 171882078 AGTCCTGTACAGGCGCTCTG-CCCGCTTTTCCTTTCAGGCTTCTGTATCAGCTAT---TTTT-CCCCTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1791208 65 -   1987038 AGTCCTGTACAGGTGCTCTG-CCCACTTTTCCTTTCAGGCTTCTGTATCAGCCGT---TTTTCCCCCTG
i cerAty1.NW_012002657v1    n 8871 C 0
s chlSab2.chr29               3815442 64 +  24206276 AGTCCTGTACAGGTGATCTG-CCCGCTTTTCCTTTCAGGCTTCTGTATCAGCTGT---TTTT-CCCCTG
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 183074 67 -   2853901 AGTCATACAGAGGTACTTTG-CCAGCTTTTCCTTTCAGACTTCTGTATCAGCTACAGGCTTC-CCCTTG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             481721 67 -   3282555 AGTCATATAGAGGTACTCTG-CAGGCTTTTCCTTTCAGACTTTTGTGTCAGCTACAGGCTTC-CCCTTG
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6739475 64 -  36342412 AATGCCCTAAAGACACTGTG-TCCCCTTTTTCTTTCAGGCTTCTGTATCAGCTGT---TGTT-CCCATG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55152972 61 + 124595110 AGTCCTCTGAGGACAC--TG-CTCACTTT-CTTCCTAACCTTCTATATCAGCTGT---TCTT-CCTCAG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 27787 62 -  40214260 AGTCTTCTCAAGATCCTGTGCCCCCCTTTTCCTTTGAGGCTTCTG---AAGCCAT---TTTT-CCCACG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               1389 43 -   2180720 ----------------------AACCATTTTCTTCCAGGGCTCTGCACCACCTGT---TTTT-CCCATG
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       624249 507 -   2566024 I
e cebCap1.NW_016107979v1       268066 605 -   1024465 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=309776.000000
s hg38.chr15_KI270850v1_alt    160975 52 +    430880 TAGAATGTGCCC-TGAACTC-CACCCCTTAACCCTACCCAATTTGTCTT--TACAT
s panTro5.chr15              17975843 53 -  83230942 TAGAATGTGCCCCTGACAGC-CACCCCCTAACCCTACCCAATTTGTTTT--TACAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202113 53 -  99763055 TAGAATGTGCCCCTGACAGC-CACCCCCTAACCCTACCCAATTTGTCTT--TACAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       260350 52 +    378907 TAGAATGTGCCC-TGACCTC-CACCCCTTAACCCTAACCGATTTGCCTT--CACAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101793103 53 + 121039945 CAGAATGTGTCCCTGACCTC-CACCCCTTAACCCTACCCAATTTGTCTT--TACAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60335532 53 + 169600520 TAGAATGTGCTCCTGACAGC-CACGCCCTAACCCTACCCAATTTGTCTT--TACGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65240192 53 + 171882078 TAGAATGTGCCCCTGACAGC-CACCCACTAACCCTACCCAATTTGTCTT--TACAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1791273 53 -   1987038 TAGAATGTGCTCCTGACAGC-CACGCCCTAACCCTACCCAATTTGTCTT--TACGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3815506 53 +  24206276 TAGAATGTGCCCCTGACAGC-CGCCCCCTAACCCTACCCAATTTGTCTT--TACAT
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 183141 53 -   2853901 TAGAATGTGCCCCTGACCCC-CACCCCTTAACCCTATCCAATTTGTCTT--TATAT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             481788 53 -   3282555 TAGAATGTGTCCCTGAGCCC-CACCCCTTAACCCTACCCAATTTGTCTT--TATAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       268671 55 -   1024465 TAGAATGTGCCCCTGACCCC-CACCCCTTAACCCTACCCAATTTGTCTTTATATAT
i cebCap1.NW_016107979v1    I 605 C 0
s otoGar3.GL873530            6739539 53 -  36342412 AGGAATGTGCCTCCAACTTCTCTAACCCTTACCAGACCCAGCCTATCTT--TCAA-
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55153033 52 + 124595110 TGGGACGAGCTCCTGCCTCT-CGC-CTCTGCCCTGTCCCAGCCTGCCTT--TTCTA
i mm10.chr9                 C 0 I 1
s canFam3.chr30                 27849 38 -  40214260 TGGAATGTACCCCTTAC--C-CAC------------CCCGATCTGTCTC--CACA-
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               1432 53 -   2180720 TGGAATGAGCCCCTGATTCC-CACCCCTGACCCTATCCCAATATGTTGT--TTCAT
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       624249 507 -   2566024 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=874947.000000
s hg38.chr15_KI270850v1_alt    161027 117 +    430880 GTCTGACCATCCATGAAGGCTCTTCTGG---GTCATATTCAGTTCATGTTGA----TATTTCCCCTT-CCTCCCCTCTTTAGTCCTTACTATTT-TTGCTTTGGTCATGTTGTCTTATGCTATATT
s panTro5.chr15              17975896 108 -  83230942 GTCTGACCATC----AAGGCTCTTCTGG---GTCATATTCAGTTCATGCTGA----TATTTCCCCTT-CCTCCCCTCTTTAGTCCTCACTATTT-TTGCTTTGGTTATGTT-----ATGCTGTATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202166 108 -  99763055 GTCTGACCATC----AAGGCTCTTCTGG---GTCATATTCAGTTCATGCTGA----TATTTCCCCTT-CCTCCCCTCTTTAGTCCTCACTATTT-TTGTTTTGGTCATGTT-----ATGCTGTATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       260402 117 +    378907 GTCTGACCATCCATCAAGGCTCTTCTGG---GTCATATTCAGTCCATGTTGA----TATTTCCCCTT-CCTCCCTTCTTTAGTCCTTACTATTT-TTGCTTTGGTCATGTTTTCTTACGCTGTATT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101793156 117 + 121039945 GTCTGACCATCCATGAAGGCTCTTCTGG---GTCATATTCAGTTCATGTTGA----TATTTCCCCTT-CTTCCCCTCTTTAGTCCTTACTATTT-TTGCTTTGGTCATGTTTTCTTATGCTGTATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60335585 108 + 169600520 GTCTGACCATC----AAGGCTCTTCTGG---GTCATATTTAGTTCATGCTGA----TATATCCCCTT-CCTCCACTGTTTAGTCCTTACTAGTT-TTGCTTTGTTCATGTT-----ATGCTGTATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65240245 108 + 171882078 GTCTGACCACC----AAGGCTCTTCTGG---GTCATATTTTGTTCATGCTGA----TATATCACCTT-CCTACCCTCTTTAGTCCTTACTATTT-TTGCTTTGGTCATGTT-----ATGCTGTATT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1791326 108 -   1987038 GTCTGACCATC----AAGGCTCTTCTGG---GTCATATTTAGTTCATGCTGA----TATATCCCCTT-CCTCCACTCTTTAGTCCTTACTAGTT-TTGCTTTGTTCATGTT-----ATGCTGTATT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3815559 108 +  24206276 GTCTGACCACC----AAGGCTCTTCTGG---GTCATATTTTGTTCATGCTGA----TATGTCACCTT-CCTCCCCTCTTTAGTCCTTACTATTT-TTGCTTTGGTCATGTT-----ATGCTGTATT
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 183194 117 -   2853901 GCCTGATCATCCCTCAAGGCTCTTCTGG---GTCATATTCAGTTCATGCTGA----TATTTCCCCTT-CTTCCCCTCTTTAGACATTACTATTT-TTGGTTTGGTTATGTTTTCTTATGCAGTATT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             481841 117 -   3282555 GCCTGATCATCCCTCAAGGCTCTTCTGG---GTCCTACTCAGTTCATGCTGA----TATTTCCCCTT-CTTCCCCTCTTGAGACATTACTCTTT-TTGGGTTGGTTATGTTTTCTTATGCAGTATT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       268726 114 -   1024465 GCCTGATCATCCCTCAAGGCTCTTCTGG---GTCATATTCAGTTCATGCTGA----TAATTCCC----CTTCCTCTCTTTAGATATTACTATTT-TTGGTTTGGTTATGTTTTCTTATGCAGTATT
i cebCap1.NW_016107979v1    C 0 C 0
s proCoq1.NW_012149419v1       624756 117 -   2566024 GTCTGACTATCCCTTAAGGCTCTTCTGG---GACATATTCAGTTCATGCTGA----TATTTCTCCTT-CCTCCCTTCTTTAGTCCTTACTATTT-CTGCTTTGGTTATGTTTTCTTATACTGTATT
i proCoq1.NW_012149419v1    I 507 C 0
s otoGar3.GL873530            6739592 113 -  36342412 ATCTGACTATCCCTCAAGGCCTTTCTGG---GTCATACGTAGTCCATGCTGA----TATTTCCCCTT-GCTCC---CTTTAGTCCTTACTATTT-CTATCTTGGTTATGTTTT-TTATACTGTATT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55153086 110 + 124595110 GGTTGATTGCCTTTTAAGACT-TTCTGT---GTCACGCGCAGTTCATAATAA----CATTTCCCCTT-TTTCC---TTTTAGTTCTTGTGATTT-CTGCTTT--TTTTTTTCTTCCATGTT-TACT
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 27887 117 -  40214260 -TCTGACCATCCCTCAAGGCTCTTCTAGGAAGTCCTATTCAGTCACTGGTGGTATTTATTTCCCCTT-CCTCCCTTCTAGAATCTTTAC-------TGCTTTGGTTATGTTTCCTAATGTTCTCTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               1485 119 -   2180720 GTCTGACCATCCCATAAGGCGCTCCTGG---ATCATACACAGTTCATGCTGA----TATTTCCCCTTCCCTACCTTATGTAGTCTTTACAGTTTGCTGCTTTGGTTTTGTTTTCCTATGTTCTGTT
i dasNov3.JH569975          C 0 I 2994
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=20345.000000
s hg38.chr15_KI270850v1_alt    161144 3 +    430880 CTG
s panTro5.chr15              17976004 3 -  83230942 CTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202274 3 -  99763055 CTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       260519 3 +    378907 CTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101793273 3 + 121039945 CTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60335693 3 + 169600520 CTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65240353 3 + 171882078 CTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1791434 3 -   1987038 CTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3815667 3 +  24206276 CTG
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 183311 3 -   2853901 CTG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             481958 3 -   3282555 CTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       268840 3 -   1024465 CTG
i cebCap1.NW_016107979v1    C 0 C 0
s proCoq1.NW_012149419v1       624873 3 -   2566024 CTG
i proCoq1.NW_012149419v1    C 0 I 327
s otoGar3.GL873530            6739705 3 -  36342412 CTA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55153196 2 + 124595110 CA-
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 28004 3 -  40214260 CTA
i canFam3.chr30             C 0 C 0
e dasNov3.JH569975               1604 2994 -   2180720 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=1841.000000
s hg38.chr15_KI270850v1_alt    161147 1 +    430880 -T
s panTro5.chr15              17976007 1 -  83230942 -T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202277 1 -  99763055 -T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       260522 1 +    378907 -T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101793276 1 + 121039945 -T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60335696 1 + 169600520 -T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65240356 1 + 171882078 -T
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1791437 1 -   1987038 -T
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3815670 1 +  24206276 -T
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 183314 1 -   2853901 -T
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             481961 1 -   3282555 -T
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       268843 1 -   1024465 -T
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530            6739708 1 -  36342412 -T
i otoGar3.GL873530          C 0 I 273
s mm10.chr9                  55153198 1 + 124595110 -T
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 28007 1 -  40214260 A-
i canFam3.chr30             C 0 C 0
e proCoq1.NW_012149419v1       624876 327 -   2566024 I
e dasNov3.JH569975               1604 2994 -   2180720 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=27381.000000
s hg38.chr15_KI270850v1_alt    161148  7 +    430880 ---------AAGCCTG
s panTro5.chr15              17976008  7 -  83230942 ---------AAGGTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202278  7 -  99763055 ---------AAGGTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       260523  7 +    378907 ---------AAGCCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101793277  7 + 121039945 ---------AAGCGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60335697  7 + 169600520 ---------AAGCCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65240357  7 + 171882078 ---------AAGCCTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1791438  7 -   1987038 ---------AAGCCTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3815671  7 +  24206276 ---------AAGCCTT
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 183315  7 -   2853901 ---------AAGCCTT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             481962  7 -   3282555 ---------AAGCCTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       268844  7 -   1024465 ---------AAGCCTT
i cebCap1.NW_016107979v1    C 0 C 0
s mm10.chr9                  55153199  7 + 124595110 ---------AATTCTG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 28008 16 -  40214260 TAGTTTTAGATGTTTG
i canFam3.chr30             C 0 C 0
e proCoq1.NW_012149419v1       624876 327 -   2566024 I
e dasNov3.JH569975               1604 2994 -   2180720 I
e otoGar3.GL873530            6739709 273 -  36342412 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=-252.000000
s hg38.chr15_KI270850v1_alt    161155 5 +    430880 TTCAA
s panTro5.chr15              17976015 5 -  83230942 TTTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202285 5 -  99763055 TTTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       260530 5 +    378907 TTTAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101793284 5 + 121039945 TTTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60335704 5 + 169600520 TTAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65240364 5 + 171882078 TTTAC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1791445 5 -   1987038 TTAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3815678 5 +  24206276 TTTAC
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 183322 5 -   2853901 AACAT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             481969 3 -   3282555 A--AT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       268851 5 -   1024465 AAAAT
i cebCap1.NW_016107979v1    C 0 I 1
s mm10.chr9                  55153206 5 + 124595110 ATTAT
i mm10.chr9                 C 0 I 1
s dasNov3.JH569975               4598 5 -   2180720 TTTAC
i dasNov3.JH569975          I 2994 C 0
e proCoq1.NW_012149419v1       624876 327 -   2566024 I
e canFam3.chr30                 28024 0 -  40214260 C
e otoGar3.GL873530            6739709 273 -  36342412 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=414087.000000
s hg38.chr15_KI270850v1_alt    161160 74 +    430880 --TTTCTTT---ATGGTGGCAGGGG-AAAATATTTTATAATTAT-GCTTTGTGCTTTTTATCTTCCACTCAATAAATGCTT
s panTro5.chr15              17976020 75 -  83230942 --TTTTTTT--TATGATGGCAGGGG-AGAATATTTTATAATTAT-GCTTTGTGCTTTTTATCTTCTACTCAATAAATGCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202290 74 -  99763055 --TTTTTTT---ATGATGGCAGGGG-AGAATATTTTATAATTAT-GCTTTGTGCTTTTTATCTTCTACTCAATAAATGCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       260535 74 +    378907 --TTTTTTT---ATGGTGGCAGGGG-AAAATATTTTATAATTAT-GCTTTGTGCTTTTTATCTTCCACTCAATAAATGCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101793289 73 + 121039945 --TTTTTTT---ATGGTGGCAGGGG-AAAATATTTTATAATTAT-GCTTTGTGGTTTTT-TCTTCCACTCAATAAATGCTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60335709 76 + 169600520 --TTTTTTT-TTATGGCGGCAGTGG-AGAATATTTTGTAATTAT-GCTTTGTGCTTTTTATCTTCCACTCAGTAAATGCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65240369 77 + 171882078 --TTTTTTTAAAATGGTGGCAGGGG-AGAATATTTTATAATTAT-ACTTTGTGCTTTTCATCTTCCACTGAATAAATGCTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1791450 76 -   1987038 --ATTTTTT-TTATGGCGGCAGTGG-AGAATATTTTGTAATTAT-GCTTTGTGCTTTTTATCTTCCACTCAGTAAATACTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3815683 77 +  24206276 --TTTTTTTTAAATGGTGGCAGGGG-AGAATATTTTATAATTAT-ACTTTGTGCTTTTCATCTTCCACTGAATAAATGCTT
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 183327 70 -   2853901 --TTTTTTT--TATGGTGTCAGGGG-AGAATA-----TAATTAT-GCTTTGTGCTTTTTATCTTGCACTCAATAAATGCTT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             481972 70 -   3282555 --TTTTTTT--TATGATGGCAGGGG-AGAATA-----TAATTAT-GCTTTGTTCTTTTTATCTTCCACTCAATAAATGCTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       268857 70 -   1024465 --ATTTTTT--TATGGTGGCAGGGG-AGAATA-----TAATTAT-GCTTCGTGCCTTTTATCTTCCACTCAATAAATGCTT
i cebCap1.NW_016107979v1    I 1 I 48
s otoGar3.GL873530            6739982 57 -  36342412 --TTTTTTT---ATGGCAGCAAGGG-AGAAAATTTT------------------CATTCAccttctactcagtaaatgctc
i otoGar3.GL873530          I 273 C 0
s mm10.chr9                  55153212 67 + 124595110 --TTTTCTCCAAGTTGTAATAGTGGCAGaatattatataattataaatttGTGCCTTATATTTTCTTTC------------
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 28024 62 -  40214260 --TCTCTTT----TTATGACAGGGG-AGAAGA-----------G-TCTCTATGCTCTTCATCTTCCACTCAGTAAATGCTC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               4603 65 -   2180720 TTCTTTTTT--AGTGGTG--AGGGA-AGAGTATTCTATACTTTT--------GCTTTTTTCCTTTCACTCAGTTATTT---
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       624876 327 -   2566024 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=280616.000000
s hg38.chr15_KI270850v1_alt    161234 53 +    430880 ----GGTCAATATTTGTTTCATTGAGTATATGACA-CTAGTCTAGCTATATTGTGCTT
s panTro5.chr15              17976095 53 -  83230942 ----GGTAAATATTTGTTTTATTGAATGTATTACC-CTATTCTAGCTATATTGTGCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202364 53 -  99763055 ----GGTAAATATTTGTTTTATTGAATGTATTACC-CTATTCTAGCTATATTGTGCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       260609 53 +    378907 ----GGTAAATATTTGTTTTATTGAATGTGTGAGC-CTATTCTAGCTATATTGTGCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101793362 53 + 121039945 ----GGTAAATATTTGTTTTATTGAGTATATGACA-CTATTCTAGCTATATTGTGCTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60335785 53 + 169600520 ----GGTAAATATTTGTTTTATTGAGTATATGACC-CTATTCTAGCTATATTGTGCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65240446 53 + 171882078 ----GGTAAATATTTGTTTTATTAAGTGTGTGATT-CTATTGTCACTACATTGTGCTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1791526 53 -   1987038 ----GGTAAATATTTGTTTTATTGAGTATATGACC-CTATTCTAGCTATATTGTGCTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3815760 53 +  24206276 ----GGTAAATATTTGTTTTATTAAGTGTGTGATC-CTATTGTCACTATATTGTGCTT
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 183397 48 -   2853901 ----CGTAAATATTTAT-----TGAGTATATGACC-CTATTCTAGCTATATTGTATTT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             482042 44 -   3282555 ----CGTAAATATTTAT---------TATGTGACC-CTATTCTAGCTATATTGTATTT
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6740039 53 -  36342412 ----agtaaatatttgttTTACTGACTATATGGCC-TCATTCTAGCTATATTCTACTT
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55153279 49 + 124595110 ----AGTTCATACTTGTTCTATTGACTATATGGCCACTGTTGTAGTTATATTT-----
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 28086 32 -  40214260 ----AGTAAATATT----------------------CTATTTTAGCTATATTCTGTTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               4668 54 -   2180720 GTTCAGTAAAAATT----CTATTGACTATATGGCCACTATCCTGGCTATATTCTGTTT
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       624876 327 -   2566024 I
e cebCap1.NW_016107979v1       268927 48 -   1024465 I
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=-1240.000000
s hg38.chr15_KI270850v1_alt    161287 1 +    430880 -G
s rheMac8.chr7               60335838 1 + 169600520 -G
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1791579 1 -   1987038 -G
i cerAty1.NW_012002657v1    C 0 C 0
s mm10.chr9                  55153328 1 + 124595110 -G
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 28118 1 -  40214260 C-
i canFam3.chr30             C 0 C 0
e proCoq1.NW_012149419v1       624876 327 -   2566024 I
e calJac3.chrY                 183445 0 -   2853901 C
e dasNov3.JH569975               4722 0 -   2180720 C
e cebCap1.NW_016107979v1       268927 48 -   1024465 I
e otoGar3.GL873530            6740092 1 -  36342412 I
e panPan2.chr15              17202417 0 -  99763055 C
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815813 0 +  24206276 C
e macFas5.chr7               65240499 0 + 171882078 C
e nomLeu3.chr6              101793415 0 + 121039945 C
e saiBol1.JH378276             482086 0 -   3282555 C
e gorGor5.CYUI01015946v1       260662 0 +    378907 C
e panTro5.chr15              17976148 0 -  83230942 C

a score=1197.000000
s hg38.chr15_KI270850v1_alt    161288 4 +    430880 AACA
s rheMac8.chr7               60335839 4 + 169600520 AACA
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1791580 4 -   1987038 AACA
i cerAty1.NW_012002657v1    C 0 C 0
s mm10.chr9                  55153329 4 + 124595110 AAGG
i mm10.chr9                 C 0 C 0
e proCoq1.NW_012149419v1       624876 327 -   2566024 I
e calJac3.chrY                 183445 0 -   2853901 C
e dasNov3.JH569975               4722 0 -   2180720 C
e canFam3.chr30                 28119 0 -  40214260 C
e cebCap1.NW_016107979v1       268927 48 -   1024465 I
e otoGar3.GL873530            6740092 1 -  36342412 I
e panPan2.chr15              17202417 0 -  99763055 C
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815813 0 +  24206276 C
e macFas5.chr7               65240499 0 + 171882078 C
e nomLeu3.chr6              101793415 0 + 121039945 C
e saiBol1.JH378276             482086 0 -   3282555 C
e gorGor5.CYUI01015946v1       260662 0 +    378907 C
e panTro5.chr15              17976148 0 -  83230942 C

a score=331.000000
s hg38.chr15_KI270850v1_alt    161292 9 +    430880 AAAATCTTT
s mm10.chr9                  55153333 9 + 124595110 GAAGTTTTC
i mm10.chr9                 C 0 C 0
e proCoq1.NW_012149419v1       624876 327 -   2566024 I
e calJac3.chrY                 183445 0 -   2853901 C
e dasNov3.JH569975               4722 0 -   2180720 C
e canFam3.chr30                 28119 0 -  40214260 C
e cebCap1.NW_016107979v1       268927 48 -   1024465 I
e otoGar3.GL873530            6740092 1 -  36342412 I
e panPan2.chr15              17202417 0 -  99763055 C
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815813 0 +  24206276 C
e cerAty1.NW_012002657v1      1791584 0 -   1987038 C
e macFas5.chr7               65240499 0 + 171882078 C
e rheMac8.chr7               60335843 0 + 169600520 C
e nomLeu3.chr6              101793415 0 + 121039945 C
e saiBol1.JH378276             482086 0 -   3282555 C
e gorGor5.CYUI01015946v1       260662 0 +    378907 C
e panTro5.chr15              17976148 0 -  83230942 C

a score=0.000000
s hg38.chr15_KI270850v1_alt    161301 714 +    430880 TTTTTTTTTTCCAAATCAATAGGTCTTTTATTGCATCATTTAAATATCACAAGTAGGTCTTAAGTGTCATCTGGCATCTTCTTTCTGTAGCCAGGTAACTCTTAGATCTTATTCATCAGCCTGCTGAACAGTTCCTTTTTCAGAGACATAGATACCATCCAAAAATTTCCTGATATCCTTGTTTTTAACTGTTGTGGCTTGCTGAATCAAAGCCGCTGAATTTGAAACAAGCTCAATGTCATTTCCTTCAAGGATTAATTCATCTTTCTGGGCTTGAGATACTGAACAAGCAACACCTGGTCTCATCCGAACCCTGCGGATGTATTTTTCACCCAAGAAATTTCGGATTTCAACAAGAGACCCATTCTCCTGGATAACAACGTTGATGGGGAAGTGAGCATACACAGACCTCATCTTGTAACGGAAGCCCAGTGTAACACCCTTGATCATGTTCTGTACATGACTACAAATAGTCCGAACGGTAGCCAGTTCCTTTCTGTTACCCCACCATTTGTCAACCCGGAGCCTCTTTTTTTTCTTTCCAAGAAGGCTGAGTTCTACATTGATGTGATTGAAGTCCCTCCGCAGGGTTCCTCTGGGGCCCTTCACGATAACTGTGCGTCCCTTCAGAGTAATGTCGACATTTTCTGGAATGTCGACAGTCTGATTGCTGAGAATAGTCTTCATTCTCGCAGTAGACGCAGCAAAGAAAGC
e proCoq1.NW_012149419v1       624876 327 -   2566024 I
e mm10.chr9                  55153342   0 + 124595110 C
e calJac3.chrY                 183445   0 -   2853901 C
e dasNov3.JH569975               4722   0 -   2180720 C
e canFam3.chr30                 28119   0 -  40214260 C
e cebCap1.NW_016107979v1       268927  48 -   1024465 I
e otoGar3.GL873530            6740092   1 -  36342412 I
e panPan2.chr15              17202417   0 -  99763055 C
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815813   0 +  24206276 C
e cerAty1.NW_012002657v1      1791584   0 -   1987038 C
e macFas5.chr7               65240499   0 + 171882078 C
e rheMac8.chr7               60335843   0 + 169600520 C
e nomLeu3.chr6              101793415   0 + 121039945 C
e saiBol1.JH378276             482086   0 -   3282555 C
e gorGor5.CYUI01015946v1       260662   0 +    378907 C
e panTro5.chr15              17976148   0 -  83230942 C

a score=6600.000000
s hg38.chr15_KI270850v1_alt    162015 1 +    430880 G
s panTro5.chr15              17976148 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202417 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       260662 1 +    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101793415 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65240499 1 + 171882078 G
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3815813 1 +  24206276 G
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 183445 1 -   2853901 G
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             482086 1 -   3282555 G
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       268975 1 -   1024465 G
i cebCap1.NW_016107979v1    I 48 C 0
s otoGar3.GL873530            6740093 1 -  36342412 G
i otoGar3.GL873530          I 1 C 0
s dasNov3.JH569975               4722 1 -   2180720 G
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       624876 327 -   2566024 I
e mm10.chr9                  55153342 0 + 124595110 C
e canFam3.chr30                 28119 0 -  40214260 C
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012002657v1      1791584 0 -   1987038 C
e rheMac8.chr7               60335843 0 + 169600520 C

a score=7098.000000
s hg38.chr15_KI270850v1_alt    162016 1 +    430880 A
s panTro5.chr15              17976149 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202418 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       260663 1 +    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101793416 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65240500 1 + 171882078 A
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3815814 1 +  24206276 A
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 183446 1 -   2853901 A
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             482087 1 -   3282555 A
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       268976 1 -   1024465 A
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530            6740094 1 -  36342412 A
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 28119 1 -  40214260 A
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               4723 1 -   2180720 A
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       624876 327 -   2566024 I
e mm10.chr9                  55153342 0 + 124595110 C
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012002657v1      1791584 0 -   1987038 C
e rheMac8.chr7               60335843 0 + 169600520 C

a score=17381.000000
s hg38.chr15_KI270850v1_alt    162017 2 +    430880 AC
s panTro5.chr15              17976150 2 -  83230942 AC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202419 2 -  99763055 AC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       260664 2 +    378907 AC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101793417 2 + 121039945 AC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65240501 2 + 171882078 AC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3815815 2 +  24206276 AC
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 183447 2 -   2853901 AC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             482088 2 -   3282555 AC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       268977 2 -   1024465 AC
i cebCap1.NW_016107979v1    C 0 C 0
s proCoq1.NW_012149419v1       625203 2 -   2566024 AC
i proCoq1.NW_012149419v1    I 327 C 0
s otoGar3.GL873530            6740095 2 -  36342412 AC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 28120 2 -  40214260 AC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               4724 2 -   2180720 AC
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55153342 0 + 124595110 C
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012002657v1      1791584 0 -   1987038 C
e rheMac8.chr7               60335843 0 + 169600520 C

a score=112746.000000
s hg38.chr15_KI270850v1_alt    162019 11 +    430880 AAAAATCTTAA
s panTro5.chr15              17976152 11 -  83230942 AAAAATCTTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202421 11 -  99763055 AAAAATCTTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       260666 11 +    378907 AAAAATCTTAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101793419 11 + 121039945 AAAAATCTTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60335843 11 + 169600520 AAAAATCTTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65240503 11 + 171882078 AAAAATCTTAA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1791584 11 -   1987038 AAAAATCTTAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3815817 11 +  24206276 AAAAATCTTAA
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 183449 11 -   2853901 AAAAATCTCAA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             482090 11 -   3282555 AAAAATCTTAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       268979 11 -   1024465 AAAAATCTTAG
i cebCap1.NW_016107979v1    C 0 C 0
s proCoq1.NW_012149419v1       625205 11 -   2566024 AAAAATCTTAA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6740097 11 -  36342412 AGAAATCTTAA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 28122 11 -  40214260 AAAAATCTTAA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               4726 11 -   2180720 AAAAATCTTAA
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55153342  0 + 124595110 C
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=1047095.000000
s hg38.chr15_KI270850v1_alt    162030 143 +    430880 -CTGCCTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTGCAGAGATAACATC-------------------------------------------------AAGAGCTTGTCATGGATAGTAC-A---------AAAAGGTCTCTAAGGGCTTGAT-GGAAGTCTGTAAATTGACTTCCTATGAAAGAGAGTGTAAGAAGTGA
s panTro5.chr15              17976163 143 -  83230942 -CTGCCTAGTAAGTTAACTGCTAAGAATTTGTCCAAAGTGCAGACATAACATC-------------------------------------------------AATAACTTGTCATGGATAGTAC-A---------AAAAGGTCTCTAAGGGCTTGAT-GGAGGCCTGTAAATTGACTTCCTATGAAAGAGAGTGTAAGAAGTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202432 143 -  99763055 -CTGCCTAGTAAGTTAACTGCTAAGAATTTGTCAAAAGTGCAGACATAACATC-------------------------------------------------AATAACTTGTCATGGATAGTAC-A---------AAAAGGTCTCTAAGGGCTTGAT-GGAGGCCTGTAAATTGACTTCCTATGAAAGAGAGTGTAAGAAGTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       260677 143 +    378907 -CTGCCTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTGCAGAGATAACATC-------------------------------------------------AAGAGCTTGTCATGGATAGTAC-A---------AAAAGGTCTCTAAGGGCTTGAT-GGAAGTCTGTAAATTGACTTCCTGTGAAAGAGAGTGTAAGAAGTGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101793430 143 + 121039945 -CTGCCTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTGCAGAGATAACATC-------------------------------------------------AAGAACTTGTCATGGATAGTAC-A---------AAAAGGTCTGTAAGGGCTTGAT-GGAAGTCTGTAAATTGACTTCCTATGAAAGAGAGTGTAAGAAGTGA
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr7               60335854 138 + 169600520 -CTGCCTTGTAAATTAACTGC-----ATTTGTCAAAAATGCAGAGATAACATC-------------------------------------------------AAGAACTTGTCATGGATAGTAC-A---------AAAAGGTCTCTAAGGGCTTGAT-GGAAGTCTGTAAATTAACTTCATATGAAAGAGAGTGTAAGAAGTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65240514 143 + 171882078 -CTGCCTTGTAAGTTAACTGCTAAGAATGTGTCAAAAGTGCAGAGATAACATC-------------------------------------------------AAGAACTCGTCATGGATAGTAC-A---------AAAAGGTCTCTAAGGGCTTGAT-AGAAGTCTGTAAATTGACTTCATATGAAAGAGAGTGTAAGAAGTGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1791595 138 -   1987038 -CTGCCTTGTAAATTAACTGC-----ATTTGTCAAAAATGCAGAGATAACATC-------------------------------------------------AAGAACTTGTCATGGATAGTAC-A---------AAAAGGTCTCTAAGGGCTTGAT-GGAAGTCTGTAAATTAACTTCATATGAAAGAGAGTGTAAGAAGTGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3815828 143 +  24206276 -CTGCCTTGTAAGTTAACTGCTAAGAATGTGTCAAAAGTGCAGAGATAACATC-------------------------------------------------AAGAACTCGTCATGGATAGTAC-A---------AAAAGGTCTCTAAGGGCTTGAT-GGAAGTCTGTAAATTGACTTCATATGAAAGAGAGTGTAAGAAGTGA
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 183460 139 -   2853901 -CTGCCTTGTAACTTAACTGCTAAGAATTTGTCAAAAGTTTAGAGATAAGATC-------------------------------------------------AAGAACTTTTCATGGGTAGCAC-A---------AAAAGGTCAATAAGGGCTTGAT-G--AGTCTGTAAATTGACTTAATATGAA--AGAGTGTAAGAAGTGA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             482101 139 -   3282555 -CTGCCTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTTTAGAGATAAGATC-------------------------------------------------AAGAACTTGTCATGGGTAGTAC-A---------AAAAGGTCAATAAGGGCTTGAT-G--AGTCTGTAAATTGACTTAATATGAA--AGAGTATAAGAATTGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       268990 140 -   1024465 -CTACCTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTTTAGAGATAAGATC-------------------------------------------------AAGAACTTGTCATGGGTAGTACAA---------AAAAGGTCAATAAGGGCTTGAT-G--AGTCTGTAAATTGACTTAATATGAA--AGAGTATAGGAAGTGA
i cebCap1.NW_016107979v1    C 0 C 0
s proCoq1.NW_012149419v1       625216 139 -   2566024 -CTGCCTTGTAAGTTAACTGCCAAGAGTTTGTAAAAATTGCAG----AATATC-------------------------------------------------AAGAATGTGTCGTAGATAGTAC-A---------AAAAGGTCACTGAAGGCTTATA-GGAAATCTGTAAATTGACTTCATGTGAAAGACAGTGTAAGATGTGG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6740108 142 -  36342412 -CTACCTTGTGGGTTTGCTGCCAAGAGGTTGTAAAAATTGCAGAGATAATACC-------------------------------------------------AAGAATAT-TCGTGGACAGTAT-G---------AAAAGGTCATTGAAGGCTTATA-GGAAATCTGTACATTGACTTCATATGAAAGACAGTGTAAGAAATGG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55153342 117 + 124595110 -CTGCCTTGAAAGATAGCTGGTAAGAATTTCTCAGA----CAG------------------------------------------------------------------TATCATGGGCAGTAA-AGAGATACTTAAAAGGTCATTGTAGATTTGATAGGACATCTGTAG-------------GAAGACCAGTGTCAGAATT--
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 28133 142 -  40214260 -CTCTTGTGTAAGTTAACTGCCAAGAATTTGTCAAAAGTGTGGAGGTAACATC-------------------------------------------------AAGA-CATATTTTAAATATTTC-A---GTATTTAATAGGTCCCTGGATA-------GGAAATCTGTAATTTGACTTCATATGAAAGATAGTTTTAAAAAGGA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               4737 202 -   2180720 CCATCTATGTAAATAAACTGCC-ATAGTTTGTGGGAAGTGCAGAGATAACATTATGAAAGTATCATGGTATGTATTTTTCTACATATTTTATAAATATGTAAAAGAAGGTGTCATCGGTTGTTC-ATAAATATTTAAAAGGTCACTGAGGGCTCCATTGGAAACCTGTACTTGGACTTCATATGAAAGACAGTGATAGAAATAA
i dasNov3.JH569975          C 0 C 0
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=3575.000000
s hg38.chr15_KI270850v1_alt    162173 1 +    430880 A
s gorGor5.CYUI01015946v1       260820 1 +    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101793574 1 + 121039945 A
i nomLeu3.chr6              I 1 C 0
s rheMac8.chr7               60335992 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1791733 1 -   1987038 A
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 183599 1 -   2853901 A
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             482240 1 -   3282555 A
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       269130 1 -   1024465 A
i cebCap1.NW_016107979v1    C 0 C 0
s proCoq1.NW_012149419v1       625355 1 -   2566024 G
i proCoq1.NW_012149419v1    C 0 I 2
s otoGar3.GL873530            6740250 1 -  36342412 G
i otoGar3.GL873530          C 0 I 2
s canFam3.chr30                 28275 1 -  40214260 A
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               4939 1 -   2180720 A
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55153459 0 + 124595110 C
e panPan2.chr15              17202575 0 -  99763055 C
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971 0 +  24206276 C
e macFas5.chr7               65240657 0 + 171882078 C
e panTro5.chr15              17976306 0 -  83230942 C

a score=879022.000000
s hg38.chr15_KI270850v1_alt    162174 376 +    430880 AAAAAGC----AAAACA-GAGTAGATGTTTTACTCTGTTTGCCAAGGGATTTGTGCT----------ATTTTTT---TTTCCTGTTTTAT----AAATTTGTCCTAATCTTAAATAATGAAGGGAAAAGAGCACTCTTTTTCAACCTCAAGGAATCCTTTTTA-TA-CTTCTTTTCTATGAAGCCATGTTATGAAAGATT----GTTATACCAACTTAAGTATAGTTTTTCCATCTTCAGT-AACAGACGTGATTGCCAT------CTAGT---------TACTGGTT-CTGATCACCccaaaatgcaaagcagcttgttctaataacttatgcaggcctattgggagctagtatatgg----------ctttgagtcctttt-gaagtatttaacataatttggcaattcca--ttactccttttatggactt
s gorGor5.CYUI01015946v1       260821 372 +    378907 AAAAAGC----AAAACA-GAGTAGATGTTTTACTCTGTTTGCCAAGGGATTTGTGCT----------GTTTTTT---T--CCTGTTTTAT----AAATTTGTCCTAATCTTAAATAATGAAGGGAAAAGAGCACTCTTTTTCAACC--AAGGAATCCTTTTTA-TA-CTTCTTTTCTGTGAAGCCATGTTATGAAAGATT----GTTATACAAACTTAAGTGTAGTTTTTCCATCTTCAGT-AACAGACCTGATTGCCAT------CCAGT---------TACTGGTT-CTGATCACCCCAAAATGCAAAGCAGCTTGTTCTAATAACTTATGCAGGCCTATTGGGAACTAGTATATGG----------CTTTGAGTCCTTTT-GAAGTATTTAACATAATTTGGCAATTCCA--TTACTCCTTTTGTGGACTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101793575 372 + 121039945 AAAAAGC----AGAACA-GAGTAGATGTTTTA--CTGTTTGCCAAGGGATTTGTGCT----------ATTTTTT---T--CCTGTTTTAT----AAATTTGTCCTAATCTTAAATAATGAAGGGAAAAGAGCACTCTTTTTCAACCTCAAGGAATCCTTTTTA-TA-CTTCTTTTCTGTGAAGCCATGTTATGAAAGATT----GTTATAGAAACTTAAGTATAGTTTTTCCATCTTCAGT-AACAGACCTGATTGCCAT------CTAGT---------TACTGGTT-CTGATCACAccaaaatgcaaagcagcttgttctaataacttgtgcaggcctattgggagctagtatatgg----------ctttgagtcctttt-gaaatatttaacataatttggcaattcca--ttactccttttatggactt
i nomLeu3.chr6              C 0 C 0
s calJac3.chrY                 183600 374 -   2853901 -AAAACC----CAG-----AGTAGATGTTTTACTTTATAGGCCAAGGAAATTGAGCTAATT---GTAATTCTTT---T--TCTGTTTTAT----AAATTTGTCCTACTCTTAAA-AATGAAGGGAAAAGAGCACTCTTTTTCAACCTCAAGGAATCATTTTTATTA-CTTCTGCTCTGTGAAGCCATGTTATGAGAGATT----GTTACACAAACTTGAGT-----TTTTCCATCTTCAGTAAACTAACCTGATTGCCAT------CTAAT---------Tagttgtt-acaatcacagcgaaaggcaaagcagcttgtttcagtaacctgtgcagccttattgggagctagtatataac------tttcttttagtcctttt-gaagtatttaacataa--tggcaactcca--ttattcattttatgaaatt
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             482241 377 -   3282555 -AAAAAA----AAAAAA-CAGTAGATGTTTTACTCTATAGGCCAAGGGAATTGAGCTAATT---GTAATTATTT---T--TCTGTTTTAT----AAATTTGTCCTACTCTTAAA-AATGAAGGG-AAAGAGCACTCTGTTCCATCCTCAAGGAATCATTTTTATTA-CT-----TCTGTGAAGCCAAGTTACGAGAGATT----GTTACACAAACTTAAGTACAGCTTTTCCATCTTCAGTAAACTAACCTGATTGCCAT------CTAAT---------Tagtggtt-acaatcacaccgaaacgaaaagcagcttgtttcagtaacttgtgcagccttattgggagctagtatatgac------tttcttttagacctttt-gaagtatttgacataa--tggcaactcta--ttattccttttatggaatt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       269131 380 -   1024465 -AAAAAA----AAC-----AGTAGCTGCTTTACGCTATAAGCCAAGGGAATTGAGCTAATT---GTAATTCTTT---T--TCTGTTTTAT----AAATTTGTCCTACTCTTAAA-AATGAAGGGAAAAGAGCACTCTTTTTCAACCTCAAGGAATCATTTTTATTA-CTTCTGTTCTGTGAAGCCAAGTTCTGAGAGATT----GTTACACAAACTTAAGTATAGTTTTTCCATCTTCAGTAAACTAACCTGATTGCCAT------CTAAT---------TAGTTGTTAACGATCAcaccgaaacgcaaagcagcttgtttcagtaacctgtgcagccttattgggagctagtatatagc------tttcttttagtcccttt-gaagtatttaacataa--tggcaactccg--ttattccttttatggaatt
i cebCap1.NW_016107979v1    C 0 C 0
s proCoq1.NW_012149419v1       625358 394 -   2566024 AAAAAAC--TCAAAACA-TAGTAGATGTTTTACTCTCTAGGCCGAGGGCATTGAGGT----------ATTTCCCCACC--CCTGTTTTAT----AAATTCATCCTGATCTTAAA-CATGAAGAGAAAAGAGTGCTCTTTTTCAACTTCAAGGAGTCCTTTTTATTA-CT-----TCTTTGAAGTCATAATATGAAAGATTGTCTGTTATACAAACTTAAGTATGATTTTATCATTTTCAGTAAACAGACCTAATTGCCAG------Tcaatgctaacatccagttgtt-gtgatcacacctaaaagcaaagcagcttgtcttaataacctgtgcagccttattggaagctagtatatggc------tttcctttagtcctttt-gaagtatttaacctaacttggcaactccattttactctgtttatggaatt
i proCoq1.NW_012149419v1    I 2 C 0
s otoGar3.GL873530            6740253 384 -  36342412 AAAAACCCATCCAAAC----GTAGATGTCTTACTCTCTAAGCCAAGGGAATTGAGCT----------AATTTCC--GC--TCTGTTTAAT-CACACATTTGCCCTGATCTTAAA-TATGAAGGGAAAAGAATGCTTTTTTAAAATCTGAAGGAGTTCTTTTTATTGTCT-----TCTGTGAAGTTATAAT-------ACTTCAAGCTATAC-AACTTAAGTACGGTTTTATTATTTTTAGTAAACAG-TGAAATTGCCAG------TGAGCGCTAacatccagttgtt-gtgatcacacctaaaagcaaaacaccttgttttaatgacctgtgcagccttattggaagctagtatatagc------tttcttttagtcctttt-gaagtattttacctaacttggcaactcca--ttactccttttatggactt
i otoGar3.GL873530          I 2 C 0
s mm10.chr9                  55153459 372 + 124595110 -AAAACC----ACAACATGAGTGTCTGCTTTCC----TGGGCCAGGGAAAGTGGGCTGGTTTGGTTTATTTTTTCCAT--CCTGTTTTAT----AAATTTGTTGTACTCTCGAA-TATGAAG-----------------------CTCACAGAGTC---TTTATTT-CTTGTTTTCTGTGGACTCA-----TGAAAGATTATCTGTTACATAAACGTACGCATTGCTTTTTCCATTTCAGTAAACAGGCCTGGTTGCCAG------TCTTCACTAACATCTAGTTGTT-ATAATCACAGTCCAAAGCAAAGCAGCTTATTTTAATAACCAGTATGGCCATTTTGGGAGCTAATATGTGGCTTTTTTTTTTTTTTAGTCATTTTAAAAATACTTAAGG-----TAGCAGTTCCA--TTACTCCTTTTGGGGGGTT
i mm10.chr9                 C 0 I 1886
s canFam3.chr30                 28276 347 -  40214260 --AAAAC----AAAACA-TAGATGTTCTTTGACTCTGTAGGCCAAGGGAATTGAGCTA---------AGTCTTT---T--CCTGTTATAT----AGATTTGTCCTAATCTTAAAATATGAAGGGAAAAAAATGCTACTTTCCA-CCTCAAAGAGTCTTTTTTATTA-CTTGCTTTGTGTGAACTCCTGATACG---GAGT----GTCATGCA------------------------------AACAAATCTAATTGCCAGTTTCCACTAACACTAACATGCAGTTGTT-ATGCTCACACCTAGAAGCAAAGCagcatg-------------tgcagccttattgggagctagtatatggc------attcttttagtcccttt-gaaatatttaacataacttggcaactcca--tttctccttatatggactt
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               4940 378 -   2180720 -AACAAC----AAAACA------GATTTCTTCCTCTCTGGGCTATGGTAATTGAGCTA---------ATTTTTT---T--CTTGTTTTATTTATAAATTTGTTCTGATCTTAAA-TATGAAGG---AAAAGTGATATTTTTCAACTTCAA-GAGTC---TTTATTG-CTTGTTTTCTGTAAATTGACGATATG-AAGATTGTCTAGCATGCAGATTTAACTAC---TTTTTCTTTTTTGGTATACA--TCTAATTTCCAT------TCAGTGGTAACATCACATTGTT-ACGATTACACCTAAAGGCAAAGCAGCTTgtttcaataacctatatagctttattgggagtgagtatatagt------tttctttcagtcctttt-gaaacatttaacataactcagcaactccg--ttactccttttatggactt
i dasNov3.JH569975          C 0 C 0
e panPan2.chr15              17202575   0 -  99763055 C
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971   0 +  24206276 C
e cerAty1.NW_012002657v1      1791734   0 -   1987038 C
e macFas5.chr7               65240657   0 + 171882078 C
e rheMac8.chr7               60335993   0 + 169600520 C
e panTro5.chr15              17976306   0 -  83230942 C

a score=188437.000000
s hg38.chr15_KI270850v1_alt    162550 68 +    430880 cttggcatctgtgaactcttggtagggaatcactgTTTTAGAATGAAAAATAtct----------------cccaggaagtaaa
s gorGor5.CYUI01015946v1       261193 68 +    378907 CTTGGCATCTATGAACTCTTGGTAGGGAATCACTGTTTTAGAATGAAAAATGTCT----------------cccaggaagtaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101793947 68 + 121039945 cttggcatctgtgaactcttggtagggaatcactgTTTTAGAATGAAAAATGTCT----------------CCCAGGAAATAAA
i nomLeu3.chr6              C 0 C 0
s calJac3.chrY                 183974 68 -   2853901 cttggcatctgggaactcttggtagggaatcactgTTTTAGAATGAAAAATCTCC----------------CCCAGGAAGTGAA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             482618 68 -   3282555 cttggcatctgggaactcttggtagggaatcactgTTTTAGAATGAAAACTCTCC----------------CCCAGGAAGTGAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       269511 68 -   1024465 cttggcatctgggaactcttggtagggaatcactgTTTTAGAATGAAAAATCTCC----------------CCCAGGAAGGGAA
i cebCap1.NW_016107979v1    C 0 C 0
s proCoq1.NW_012149419v1       625752 68 -   2566024 cttggcatctggggactcttgatagggaatcgcAGTTTTGAAGTAAAAAATCTCc----------------cccgggaagtaaa
i proCoq1.NW_012149419v1    C 0 I 508
s otoGar3.GL873530            6740637 61 -  36342412 cttggcatatggggactcttggtagagaaTTGCAATGTTAGAGCAAAAAATCT-----------------------AAAGTAAA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 28623 84 -  40214260 ctggaaatctggtaactcttgatagggaattaGTATTTCAGAGTGAAAATCTCCCCTCCCTCACCCCACCACCCACGGTGTAAA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               5318 68 -   2180720 tttggcatctgggaacccatgataggaaatcactgTTTTAGAGTGAACAATTTCC----------------CCTAGGAGGTAAA
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55153831 1886 + 124595110 I
e panPan2.chr15              17202575  0 -  99763055 C
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971  0 +  24206276 C
e cerAty1.NW_012002657v1      1791734  0 -   1987038 C
e macFas5.chr7               65240657  0 + 171882078 C
e rheMac8.chr7               60335993  0 + 169600520 C
e panTro5.chr15              17976306  0 -  83230942 C

a score=153640.000000
s hg38.chr15_KI270850v1_alt    162618 80 +    430880 ttagccagtaaacaaatgaaa------cttcattttt-ta-tatgacttgtagagcctaaattat-tactc-tttctgcataagtggctg
s gorGor5.CYUI01015946v1       261261 80 +    378907 ttagccggtaaacaaatgaaa------cttcattttt-ta-tatgacttgtagagcataaattat-tactc-tttctgcataagtggctg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101794015 80 + 121039945 TTAGCTGGTAAACAAATGAAA------CTTCGTTTTT-TA-TATGACTTGTAGAGCATAAATTAT-TACTC-TTTCTGCATAAGTGGCTG
i nomLeu3.chr6              C 0 C 0
s calJac3.chrY                 184042 80 -   2853901 TTAGCT-GTAAACAAATGAAA------CTTTATTTTTCTG-TATGACTTGTAGAGCATAAATTAT-TGCTC-TTTCTGCATGAGTGGCTG
i calJac3.chrY              C 0 I 4
s saiBol1.JH378276             482686 81 -   3282555 TTAGCT-GTAAACAAATGAAA------CTTCATTTTTCTG-TATGACTTGTAGAGCATAAATTAT-TTCTCTTTTCTGCATGAGTGGCTG
i saiBol1.JH378276          C 0 I 4
s cebCap1.NW_016107979v1       269579 86 -   1024465 TTAGCT-GTAAACGAATGAAACTTCATCTTCATTTTTCTA-TATGACTTGTAGAGCATAAATTAT-TGCTC-TTTCTGCGTGAGTGGCTG
i cebCap1.NW_016107979v1    C 0 I 725
s otoGar3.GL873530            6740698 79 -  36342412 TTACCTGGTAAACAGACGAAA------CATCATTTTT-TA-TGTTATTTGTATAGCATAAATCAT-TCCT--TTTCTGCGTGAGTGCCTG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 28707 80 -  40214260 TTAGCTGGCAAACA----AAA------CTTCATACTAATGTTATTGTTTGTGTAGCATAAACCATAAACTCTTTTTTGCATGAGTGGCTA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               5386 79 -   2180720 TGAGCTGGTAAATAAATAAAA------CCTCAGTCTT-TA-T-TTTTTTGTGTAGCATTAATCAT-TACTC-TTTGTGCATGAGAAGCTA
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       625820 508 -   2566024 I
e mm10.chr9                  55153831 1886 + 124595110 I
e panPan2.chr15              17202575  0 -  99763055 C
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971  0 +  24206276 C
e cerAty1.NW_012002657v1      1791734  0 -   1987038 C
e macFas5.chr7               65240657  0 + 171882078 C
e rheMac8.chr7               60335993  0 + 169600520 C
e panTro5.chr15              17976306  0 -  83230942 C

a score=23007.000000
s hg38.chr15_KI270850v1_alt    162698 15 +    430880 ctttctaggctgctt
s gorGor5.CYUI01015946v1       261341 15 +    378907 ctttctaggctgCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101794095 15 + 121039945 CTTTCTAGGCTGCTT
i nomLeu3.chr6              C 0 C 0
s calJac3.chrY                 184126 15 -   2853901 CTTGCTAGGCTGTTA
i calJac3.chrY              I 4 C 0
s saiBol1.JH378276             482771 15 -   3282555 CTTGCTAGGCTGTTA
i saiBol1.JH378276          I 4 C 0
s otoGar3.GL873530            6740777 15 -  36342412 TTTGCTAGGCTACTT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 28787 15 -  40214260 TTTGCCAGGCTACTT
i canFam3.chr30             C 0 I 438
s dasNov3.JH569975               5465 15 -   2180720 TTGAGCAGGCTTCTT
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       625820 508 -   2566024 I
e mm10.chr9                  55153831 1886 + 124595110 I
e cebCap1.NW_016107979v1       269665 725 -   1024465 I
e panPan2.chr15              17202575  0 -  99763055 C
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971  0 +  24206276 C
e cerAty1.NW_012002657v1      1791734  0 -   1987038 C
e macFas5.chr7               65240657  0 + 171882078 C
e rheMac8.chr7               60335993  0 + 169600520 C
e panTro5.chr15              17976306  0 -  83230942 C

a score=10321.000000
s hg38.chr15_KI270850v1_alt    162713 9 +    430880 tTAGCGAGA
s gorGor5.CYUI01015946v1       261356 9 +    378907 TTAGCGAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101794110 9 + 121039945 TTAGCGAGA
i nomLeu3.chr6              C 0 C 0
s calJac3.chrY                 184141 9 -   2853901 TGAGTGGGA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             482786 9 -   3282555 TGAGTGAGA
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6740792 9 -  36342412 TTGGTGGAA
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975               5480 9 -   2180720 TTGGTGGAA
i dasNov3.JH569975          C 0 I 369
e proCoq1.NW_012149419v1       625820 508 -   2566024 I
e mm10.chr9                  55153831 1886 + 124595110 I
e canFam3.chr30                 28802 438 -  40214260 I
e cebCap1.NW_016107979v1       269665 725 -   1024465 I
e panPan2.chr15              17202575 0 -  99763055 C
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971 0 +  24206276 C
e cerAty1.NW_012002657v1      1791734 0 -   1987038 C
e macFas5.chr7               65240657 0 + 171882078 C
e rheMac8.chr7               60335993 0 + 169600520 C
e panTro5.chr15              17976306 0 -  83230942 C

a score=3936.000000
s hg38.chr15_KI270850v1_alt    162722 5 +    430880 TTGTt
s gorGor5.CYUI01015946v1       261365 5 +    378907 TTGTt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101794119 5 + 121039945 TTGTt
i nomLeu3.chr6              C 0 C 0
s calJac3.chrY                 184150 5 -   2853901 CTTTT
i calJac3.chrY              C 0 I 384
s saiBol1.JH378276             482795 5 -   3282555 CTTTT
i saiBol1.JH378276          C 0 I 1420
s otoGar3.GL873530            6740801 5 -  36342412 CTTTT
i otoGar3.GL873530          C 0 I 382
e proCoq1.NW_012149419v1       625820 508 -   2566024 I
e mm10.chr9                  55153831 1886 + 124595110 I
e dasNov3.JH569975               5489 369 -   2180720 I
e canFam3.chr30                 28802 438 -  40214260 I
e cebCap1.NW_016107979v1       269665 725 -   1024465 I
e panPan2.chr15              17202575 0 -  99763055 C
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971 0 +  24206276 C
e cerAty1.NW_012002657v1      1791734 0 -   1987038 C
e macFas5.chr7               65240657 0 + 171882078 C
e rheMac8.chr7               60335993 0 + 169600520 C
e panTro5.chr15              17976306 0 -  83230942 C

a score=116551.000000
s hg38.chr15_KI270850v1_alt    162727 437 +    430880 agaaacaaatgatcggtgctgtgaggaagaagcagcactcaggc-aaaaaagttttctcagcaagacaatttgcttctgcaagtatgctgcttgcattagtcatgattgcaagagcacaccaaacggggtggagcaggggttcttatccctaacacagcccctgcctctgtgtcattccaacatgggctggggtaggactgcacaatcttagctgactcagttggatattgtgaatattttctctaataagaaagggagggggaatgtgagttacaggttgggactggtaggaagagttgcttacaaggcaggttactaagcaggtaactaagctggtaagtaggttcgagaaggtacagggaaattgttcttaggaacaaagaacaaggaagttgaacaagttaaacctttgaagaggaacttactgtacctaacaA
s gorGor5.CYUI01015946v1       261370 437 +    378907 agaaacaaatgattggtgctgtgaggaagaagcggcactcaggc-aaaaaagttttctcagcaagacaatttgcttctgcaagtatgctgcttgcattagtcatgattgcaagagcacaccaaacggggtggagcaggggttcttatccctaatgcactccctacctctgtgtcattccaacatgggctggggtaggactgcacaatcttagctgactcagctggatattgtgaatattttctctaataagaaagggagggggaatgtgagttacagattgggactggtaggaggagttgtttacaaggcaggttactaagcaggtaactaagctggtaagtagggtcgagaaggtacagggaaattgttcttaggaacaaagaacaaggaagttgaacaagttaaacctttgaagaggaacttactgtacctaacaG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101794124 438 + 121039945 agaaacaaatgattggtgctgtgaggaagaaccagcactcaggcaaaaaaagttttctcagcaagacaatttgcttctgcagctatgctgcttgcattagtcatgattgcaagagcacaccaaacggggtggagcaggggttcttatccctaatgcagtccctacctctgtgtcattccaacatgggctggggtaggactgcacaatctttgctaacccagttggctattgtgaatattttctctaataaggaagggagggggaatgtgagttacaggttgggactggtaggaagagttgtttacaaggcaggttactatgcaggtaactaagctggtaagtagggtcgagaaggtacagggaaattgttcttaggaacaaagaacaaggaagttgaacaagttaaacctttgaagaggaacttactgtacctaataA
i nomLeu3.chr6              C 0 I 398
e proCoq1.NW_012149419v1       625820 508 -   2566024 I
e mm10.chr9                  55153831 1886 + 124595110 I
e calJac3.chrY                 184155 384 -   2853901 I
e dasNov3.JH569975               5489 369 -   2180720 I
e canFam3.chr30                 28802 438 -  40214260 I
e cebCap1.NW_016107979v1       269665 725 -   1024465 I
e otoGar3.GL873530            6740806 382 -  36342412 I
e panPan2.chr15              17202575   0 -  99763055 C
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971   0 +  24206276 C
e cerAty1.NW_012002657v1      1791734   0 -   1987038 C
e macFas5.chr7               65240657   0 + 171882078 C
e rheMac8.chr7               60335993   0 + 169600520 C
e saiBol1.JH378276             482800 1420 -   3282555 I
e panTro5.chr15              17976306   0 -  83230942 C

a score=606066.000000
s hg38.chr15_KI270850v1_alt    163164 6885 +    430880 [encoded data, 6915 characters]
s gorGor5.CYUI01015946v1       261807 6876 +    378907 [encoded data, 6915 characters]
i gorGor5.CYUI01015946v1    C 0 C 0
e proCoq1.NW_012149419v1       625820  508 -   2566024 I
e mm10.chr9                  55153831 1886 + 124595110 I
e calJac3.chrY                 184155  384 -   2853901 I
e dasNov3.JH569975               5489  369 -   2180720 I
e canFam3.chr30                 28802  438 -  40214260 I
e cebCap1.NW_016107979v1       269665  725 -   1024465 I
e otoGar3.GL873530            6740806  382 -  36342412 I
e panPan2.chr15              17202575    0 -  99763055 C
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971    0 +  24206276 C
e cerAty1.NW_012002657v1      1791734    0 -   1987038 C
e macFas5.chr7               65240657    0 + 171882078 C
e rheMac8.chr7               60335993    0 + 169600520 C
e nomLeu3.chr6              101794562  398 + 121039945 I
e saiBol1.JH378276             482800 1420 -   3282555 I
e panTro5.chr15              17976306    0 -  83230942 C

a score=873.000000
s hg38.chr15_KI270850v1_alt    170049 3 +    430880 gtc
s gorGor5.CYUI01015946v1       268683 3 +    378907 gtc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101794960 3 + 121039945 GTC
i nomLeu3.chr6              I 398 C 0
e proCoq1.NW_012149419v1       625820 508 -   2566024 I
e mm10.chr9                  55153831 1886 + 124595110 I
e calJac3.chrY                 184155 384 -   2853901 I
e dasNov3.JH569975               5489 369 -   2180720 I
e canFam3.chr30                 28802 438 -  40214260 I
e cebCap1.NW_016107979v1       269665 725 -   1024465 I
e otoGar3.GL873530            6740806 382 -  36342412 I
e panPan2.chr15              17202575 0 -  99763055 C
e colAng1.NW_012116021v1       289588 5764 +   4111199 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971 0 +  24206276 C
e cerAty1.NW_012002657v1      1791734 0 -   1987038 C
e macFas5.chr7               65240657 0 + 171882078 C
e rheMac8.chr7               60335993 0 + 169600520 C
e saiBol1.JH378276             482800 1420 -   3282555 I
e panTro5.chr15              17976306 0 -  83230942 C

a score=5652.000000
s hg38.chr15_KI270850v1_alt    170052 3 +    430880 aac
s gorGor5.CYUI01015946v1       268686 3 +    378907 aac
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101794963 3 + 121039945 AAC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106505782 3 - 171882078 AAC
i macFas5.chr7              I 20168 C 0
s colAng1.NW_012116021v1       295352 3 +   4111199 AAC
i colAng1.NW_012116021v1    I 5764 C 0
s calJac3.chrY                 184539 3 -   2853901 AAG
i calJac3.chrY              I 384 C 0
s saiBol1.JH378276             484220 3 -   3282555 AAG
i saiBol1.JH378276          I 1420 C 0
s otoGar3.GL873530            6741188 3 -  36342412 AAG
i otoGar3.GL873530          I 382 C 0
s mm10.chr9                  55155717 3 + 124595110 AAG
i mm10.chr9                 I 1886 C 0
e proCoq1.NW_012149419v1       625820 508 -   2566024 I
e dasNov3.JH569975               5489 369 -   2180720 I
e canFam3.chr30                 28802 438 -  40214260 I
e cebCap1.NW_016107979v1       269665 725 -   1024465 I
e panPan2.chr15              17202575 0 -  99763055 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971 0 +  24206276 C
e cerAty1.NW_012002657v1      1791734 0 -   1987038 C
e rheMac8.chr7               60335993 0 + 169600520 C
e panTro5.chr15              17976306 0 -  83230942 C

a score=937340.000000
s hg38.chr15_KI270850v1_alt    170055 145 +    430880 ttgTACAAAGGAAAGA---AACAAACCTTGATTCAGGAGCCTAGGACTTTTTCTTTGGTTTGCCC-TCCTGGGACAGATTACCGTTCCAAATTGAATTTGTGGA-GGAGCGTTGGGAAATATCAGAA-CTGTCATATTAAGCACCTAAGTG
s gorGor5.CYUI01015946v1       268689 146 +    378907 ttgTACAAAGCAAAGA---AACAAACCTTGATTCAGGAGCCTAGGACTTTTTCTTTGGTTTGCCC-TCCTGGGACAGATTACCATTCCAAATTGAATTTGTGGA-GGAGCATTGGGAAATATCAGAAACTGTCATATTAAGCACCTAAGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101794966 145 + 121039945 TTGTACAAAGGAAAGA---AACCAACCTTGACTCAGGAGCCTAGGACTTTTTCTTTGGTTTGCCC-TCCTGGGACAGATTACCTTTCCAAATTGAATTTGTGGA-GGAGCATTGGGAAATATCAGAA-CTGTCATATTAAGCACCTAAGTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106505785 144 - 171882078 CTGTAGAAAGGAATG----AACAAACCTTGACTCAGGAGCCTAGGACTTTTTCTTTGGTTTGCCC-TCCTGGGACGGATTACCTTTCCAAATTTAATTTGTGGA-GGAGCATTGGGAAATATCAGAA-CTGTCATATGAAGCACCTAAGTG
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       295355 141 +   4111199 TTGTACAAAGGA-------AATAAACCTTGATTCAGGAGCCTAGGACTTTTTCTTTGGTTTACCC-TCCTGGGACAGATTACCTTTCCAAATTTAATTTGTGGA-GGAGCATTGGGAAATACCAGAA-CTGTCATATTAAGCACCTAAGTG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 184542 145 -   2853901 TTGTACAAAGGAAATA---AACAAACCTGGACTAAAGAGCCTAAGACTTTGTCTTTGGTTTGCCC-TCCTGGGACAGATTACCTTTCCCAATTGAATTCCTGGA-GAACCATTTGGAAGTATCAGAA-CTGTCATGTTAAGCACCTAAGTG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             484223 145 -   3282555 TCGTACAATGGAAATA---AACAAACCTGGACTAAGGAGCCTAAGACTTTCTCTTTGGTTTGCCC-TCCTGGGACAGATTACCTTTCCAAACTGAATTCGTGGA-GAACCATTTGGAAATATCAGAA-CTGTCATGTTAAGCACCTAAGTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       270390 145 -   1024465 TTGTACAATGGAAATA---AACAAACCTGGACTAAAGAGCCTAAGACTTTCTCTTTGGTTTGCCC-TCCTGGGACAGATTACCTTTCCAAATTGAATTCGTGGA-GAACCATTTGGAAATATCAGAA-CTGTCATGTTAAGCACCTAAGTG
i cebCap1.NW_016107979v1    I 725 I 8
s aotNan1.NW_018511953v1       715417 145 -   3745603 TTGCACAAAGGAAATA---AACAAACCTGGACTAAAGAGCCTAAGATTTTCTCTTTGGTTTGCCC-TCCTGGGACAGATTACCTTTCCAAATTGAATTCGTGGA-GAACCATTTGGAAATATCAGAA-CTGTCATGTTAAGCACCTAAGTG
i aotNan1.NW_018511953v1    N 0 C 0
s micMur3.chr3                 902686 148 - 119751181 TTGTACAAAGGAAATAATGAACAAATCTTGACTAAGGAATCTAAGACCTTTTCTTTAGTTTACTC-TCGTGGGACAGATTACTTTTCCAAATTGAACTCATGGA-GAAACATTTGAAAATATCAGAA-CTGTCATGGTAAGCACGTAAGTA
i micMur3.chr3              N 0 C 0
s proCoq1.NW_012149419v1       626328 149 -   2566024 TTGTACAAAGGAAATAATGGACAAATCTTGACTAAGGAACCTAAGACCTCTTCTTTGGTTTACTCTTCATGGGACAGGTTACTTTTCCAAATTGAACTCATGGA-GAACCATTTGGAAATACCAGAA-CTGTCATATTAAGAACCTAAGTG
i proCoq1.NW_012149419v1    I 508 C 0
s otoGar3.GL873530            6741191 147 -  36342412 TTGTAC-AAGGAAATAATGAACAAATCTTGACTGAGGAACTGAAGGCCTTCTCTTTGGTTTGCCC-TCATGGGACAGATTATTTTCCCAAACTGAACATATGGA-GAAACATTTGGAAATATCACAA-CTGTCATGGTGAACACCTAAGTA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55155720 146 + 124595110 TTGTACAAAGGAAATTATGAACAAAA--TGACCACAGAGCCTAAGGATCTTTATTTAGCTTATTC-TCCAGTGACAGCTTACCTTTCCAAATTGAATTCATGGA-GAAGCTGTTGGAAATAACAGCG-CTGATGTGTTAAGATCCTAAATG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 29240 129 -  40214260 TTATACAAAGGAAATCATGAGCCAA-CTTGATTAAAGAGCCCAATACCTTTTCTTTGGTCTGCCC-TTCTGGGACAGATTACCTTTCCAAATTGAACTCCTGGA-GAATCATTTGGAAATA-----A-C-------------ACCTAAGTG
i canFam3.chr30             I 438 C 0
s dasNov3.JH569975               5858 144 -   2180720 TTGTACAAAGGAAAA----AATAAAATTTAACTAAGGAGCCTAAGTCCTTTTCTTTGGTCTTTTC-ATCTGGGACAG-TTACCTTTCCAAATTGAACTTTTGGATGAGTCACTTGGAAATATTAGAG-TGGTTGCATTAAGTACCTAAGTG
i dasNov3.JH569975          I 369 C 0
e panPan2.chr15              17202575   0 -  99763055 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971   0 +  24206276 C
e cerAty1.NW_012002657v1      1791734   0 -   1987038 C
e rheMac8.chr7               60335993   0 + 169600520 C
e panTro5.chr15              17976306   0 -  83230942 C

a score=33176.000000
s hg38.chr15_KI270850v1_alt    170200 4 +    430880 GTAC
s gorGor5.CYUI01015946v1       268835 4 +    378907 GTAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101795111 4 + 121039945 GTAC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106505929 4 - 171882078 GTAC
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       295496 4 +   4111199 GTAC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 184687 4 -   2853901 GTAC
i calJac3.chrY              C 0 I 1
s saiBol1.JH378276             484368 4 -   3282555 GTAC
i saiBol1.JH378276          C 0 I 1
s aotNan1.NW_018511953v1       715562 4 -   3745603 GTAC
i aotNan1.NW_018511953v1    C 0 I 4
s micMur3.chr3                 902834 4 - 119751181 GTAC
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       626477 4 -   2566024 GTAC
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6741338 4 -  36342412 GTAC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55155866 4 + 124595110 GTAC
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 29369 4 -  40214260 GTAC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               6002 4 -   2180720 GTGC
i dasNov3.JH569975          C 0 C 0
e cebCap1.NW_016107979v1       270535 8 -   1024465 I
e panPan2.chr15              17202575 0 -  99763055 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971 0 +  24206276 C
e cerAty1.NW_012002657v1      1791734 0 -   1987038 C
e rheMac8.chr7               60335993 0 + 169600520 C
e panTro5.chr15              17976306 0 -  83230942 C

a score=18619.000000
s hg38.chr15_KI270850v1_alt    170204 3 +    430880 TTT
s gorGor5.CYUI01015946v1       268839 3 +    378907 TTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101795115 3 + 121039945 TTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106505933 3 - 171882078 TTT
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       295500 3 +   4111199 TTT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 184692 3 -   2853901 TTC
i calJac3.chrY              I 1 C 0
s saiBol1.JH378276             484373 3 -   3282555 TTC
i saiBol1.JH378276          I 1 C 0
s micMur3.chr3                 902838 3 - 119751181 TTT
i micMur3.chr3              C 0 I 51
s proCoq1.NW_012149419v1       626481 3 -   2566024 TTT
i proCoq1.NW_012149419v1    C 0 I 80
s otoGar3.GL873530            6741342 3 -  36342412 TTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55155870 3 + 124595110 TTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 29373 3 -  40214260 TTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               6006 3 -   2180720 TTT
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       715566 4 -   3745603 I
e cebCap1.NW_016107979v1       270535 8 -   1024465 I
e panPan2.chr15              17202575 0 -  99763055 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971 0 +  24206276 C
e cerAty1.NW_012002657v1      1791734 0 -   1987038 C
e rheMac8.chr7               60335993 0 + 169600520 C
e panTro5.chr15              17976306 0 -  83230942 C

a score=890.000000
s hg38.chr15_KI270850v1_alt    170207 1 +    430880 T
s gorGor5.CYUI01015946v1       268842 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101795118 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106505936 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       295503 1 +   4111199 T
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530            6741345 1 -  36342412 C
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55155873 1 + 124595110 C
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 29376 1 -  40214260 C
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               6009 1 -   2180720 C
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 902841 51 - 119751181 I
e proCoq1.NW_012149419v1       626484 80 -   2566024 I
e aotNan1.NW_018511953v1       715566 4 -   3745603 I
e calJac3.chrY                 184695 0 -   2853901 C
e cebCap1.NW_016107979v1       270535 8 -   1024465 I
e panPan2.chr15              17202575 0 -  99763055 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971 0 +  24206276 C
e cerAty1.NW_012002657v1      1791734 0 -   1987038 C
e rheMac8.chr7               60335993 0 + 169600520 C
e saiBol1.JH378276             484376 0 -   3282555 C
e panTro5.chr15              17976306 0 -  83230942 C

a score=1365.000000
s hg38.chr15_KI270850v1_alt    170208 1 +    430880 A
s gorGor5.CYUI01015946v1       268843 1 +    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101795119 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106505937 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       295504 1 +   4111199 A
i colAng1.NW_012116021v1    C 0 C 0
s mm10.chr9                  55155874 1 + 124595110 A
i mm10.chr9                 C 0 I 7
e micMur3.chr3                 902841 51 - 119751181 I
e proCoq1.NW_012149419v1       626484 80 -   2566024 I
e aotNan1.NW_018511953v1       715566 4 -   3745603 I
e calJac3.chrY                 184695 0 -   2853901 C
e dasNov3.JH569975               6010 0 -   2180720 C
e canFam3.chr30                 29377 0 -  40214260 C
e cebCap1.NW_016107979v1       270535 8 -   1024465 I
e otoGar3.GL873530            6741346 0 -  36342412 C
e panPan2.chr15              17202575 0 -  99763055 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971 0 +  24206276 C
e cerAty1.NW_012002657v1      1791734 0 -   1987038 C
e rheMac8.chr7               60335993 0 + 169600520 C
e saiBol1.JH378276             484376 0 -   3282555 C
e panTro5.chr15              17976306 0 -  83230942 C

a score=575443.000000
s hg38.chr15_KI270850v1_alt    170209 722 +    430880 ATAGaggagttattcagaaattatattaggcagatagagagggtaaggaggcctcagtaaggctttcccttttaatagaaacaactccagaaacatttctttttcttttctttttatc--ttttttttggagacggagtctcgctctgtcgcccaggctgaagtgcagtggtgcgatctcagctcactgcagcctctgcctcccaggttcaagtgaatctcctgcctcagcctcctgagtagctgggactacaggcTGCcaagctttgatatgcaaataccagcgcttagaaactgtgtccattcaacatggagattcccaccctcttcttctagtcaccacctcaaggtgacacctccagatgaccccacgtgtgcaggacaacatggtgacctacatttgcatattaaaaggctagggtgggagggccacgtttttctcgggctgcatgaatgacctgcctggtcaaaccaataccctggtccctgtgcaaatcagacaccacctcctccagcctcccaatataaccgagtactgttctgccacacacggggctttttctctgttcggagcccccctttttctgtacc--gcagggagcctttcttctttcttgcctattaaactttctgttccttaaaaccactcctgtgtgtccatatcgtttaactgacgtgacacaaaggaccccgatgtttctccagtcatcagagccatatcaCTTTG
s gorGor5.CYUI01015946v1       268844 717 +    378907 ATAGaggagttattcagaaa--atattaggcagatagagagggtaaggaggcctcagtaaggctttccctttta-tagaaacaactccagaaacatttctttttctttc--ttttatc--ttttttttggagacggagtctcgctctgtcgcccaggctggagtgcagtggtgtgatctcagctcactgcagcctctgcctcccaggttcaagtgaatctcctgcctcagcctcctgagtagctgggactacaggcTGCcaagctttgatatgcaaatgccagcgcttagaaactgtgtccattcaacatggtgattcccaccctcttcttctagtcaccatctcaaggtgacacctccagatgaccccacgtgtgcaggacaacatggtgacctacatttgcatattaaaaggctagggtgagagggccatgtttttctcgggctgcatgaatgacatgcctggtgaaaccaatgccctggtccctgtgcaaatcagacaccacctcctccagcctaccaatataaccaagtactgttctgccacacccggggctttttctctgttcggagcccccctttttctgtaca--gcagggagcctttcttctttcttgcctattaaactttctgctccttaaaaccactcctgtgtgtccatgtcatttaactgacgtgacacaaaggaccccgatgtttctccagtcatcagagccatatcaCTCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101795120 724 + 121039945 ATAGaggagttattcagaaattatattaggcagatagagagggtaaggagtcctcagtaaggctttcccttttaatagaaacaactccagaaacatttctttctcttttctttttatcttttttttttggagacggagtctcactctgttgcccaggctggagtgcagtggtgagatctcagcccactgcagcctctgcctcccaggttcaagtgaatctcctgcctcagcctcctgagtagctgggactacaggcTGCcaagctttgatatgcaaatgccagcgcttagaaactgtgtccattcaacatggagattcccaccctcttcttctagtcaccacctcaaggtgacacctccagatgaccccacttgtgcgggacaacatggtgacctacatttgcatattaaaaggctagggtgggagggccacgtttttcttggggtacatgaatgacatgcctggtcaaaccaatgccctgggccctgtgcaaatcagacaccacctcctccagcctcccaatataaccgagtactattctgccacacacggggctttttctctgttcggagcccccctttttctgtaca--gcgaggagcctttcttctttcttgcctattaaactttctgctccttaaaaccactcctgtgtgtccatgtcgtttaactggcgtgagacagaggatgccgatgtttctccagtcatcagagccatatcaCTTTC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106505938 712 - 171882078 GTAGaggagttactcagaaattatattaggcagatagagagggaaaggagtcctcagtaaggctttcccttttaatagaaacaactcctgaaacatttcttttcttttc--------t--ttttttttggagacggagtctcactctgtagaccaggctttagtgcagtgatgtgatctcggctcactgcaacctcctcctcccagttatagttgcatctcctgcctcagcctcctgagtagctgggactgcaggcTGCcgagctttaatatgcaaatgtcagcacttggaaactgagtccattcaacatgaaaattcccgccctcttcttctagtcaccgcctcaaggtgacacctccagaagaccc--tgtgtgcaggacaatatggtgacctacatttgcaaattaaaaggctagagtgggagggccacgtttttcttgggctacatgaatgacatgcctggtcaaaccgattccctgggcccaatgcaaatcagacaccacctcctccagcctcccaatataaccaagtacttttctgctgcacatggggctttttctctgttcggagccctgctttctctgtaca--ggggggagcctttcttctttcttgcctattaaactttctgctccttaaaaccactcctctgcatccatgttgtttaactgatgtgagcccaaggaccctgatgtttctccagtcatcagagccatatcaATTTC
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       295505 710 +   4111199 ATAGaggagttattcagaaattatattaggcagatagagacggtaaggagtcctcagtaaggctttcccttttaatagaaacaactcctgaaacatttctcttcttttc-----------ttttttttggagacggagtctcactctgtcgaccaggctttagtgcagtgatgtgatctcagctcactgcaacctcttcctcccaggtacagttgcatctcctgcctcagcctcctgagtagctgggattccaggcTGCcaagctttaatatgcaaatggcagcacttggaaactgagtccattcaacatgaaaattcccgccc---tcttctagtcaccacctcaaggtgacacctccagaagaccc--tgtgtgcaggacaatatagtgacctacatttgcaaattaaaatgctagggtgggagggccacgtttttcttgggctacatgaatgacatgcctggtcaaaccgattccctgggccctgtgcaaatcagacaccacctccttcagcctcccaatataaccaagtacttttctgctgcacacagggctttttctctgttcggagccctgctttctctgtacaggggggggggcctttcttctttcttgcctattaaactttctgctccttaaaaccactcctctgcatccatgttgtttaactggtgtgagctgaaggatcccgatgtttctctagtcatcagagccatatcaCTTTC
i colAng1.NW_012116021v1    C 0 C 0
e micMur3.chr3                 902841  51 - 119751181 I
e proCoq1.NW_012149419v1       626484  80 -   2566024 I
e aotNan1.NW_018511953v1       715566   4 -   3745603 I
e mm10.chr9                  55155875   7 + 124595110 I
e calJac3.chrY                 184695   0 -   2853901 C
e dasNov3.JH569975               6010   0 -   2180720 C
e canFam3.chr30                 29377   0 -  40214260 C
e cebCap1.NW_016107979v1       270535   8 -   1024465 I
e otoGar3.GL873530            6741346   0 -  36342412 C
e panPan2.chr15              17202575   0 -  99763055 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971   0 +  24206276 C
e cerAty1.NW_012002657v1      1791734   0 -   1987038 C
e rheMac8.chr7               60335993   0 + 169600520 C
e saiBol1.JH378276             484376   0 -   3282555 C
e panTro5.chr15              17976306   0 -  83230942 C

a score=37544.000000
s hg38.chr15_KI270850v1_alt    170931 7 +    430880 AGTCCAG
s gorGor5.CYUI01015946v1       269561 7 +    378907 AGTCCAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101795844 7 + 121039945 AGTCCAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106506650 7 - 171882078 AGTCCAG
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       296215 7 +   4111199 AGTCCAG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 184695 7 -   2853901 AGTCCAG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             484376 7 -   3282555 AGTCCAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       270543 7 -   1024465 AGTCCAG
i cebCap1.NW_016107979v1    I 8 C 0
s aotNan1.NW_018511953v1       715570 7 -   3745603 AGTCCAG
i aotNan1.NW_018511953v1    I 4 C 0
s otoGar3.GL873530            6741346 7 -  36342412 AGTCTGG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 29377 7 -  40214260 AGGCCAG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               6010 7 -   2180720 AGGCCAG
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 902841 51 - 119751181 I
e proCoq1.NW_012149419v1       626484 80 -   2566024 I
e mm10.chr9                  55155875 7 + 124595110 I
e panPan2.chr15              17202575 0 -  99763055 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971 0 +  24206276 C
e cerAty1.NW_012002657v1      1791734 0 -   1987038 C
e rheMac8.chr7               60335993 0 + 169600520 C
e panTro5.chr15              17976306 0 -  83230942 C

a score=162592.000000
s hg38.chr15_KI270850v1_alt    170938 31 +    430880 -AGG-AATTATTGTTTTCATTTATCTG---AATTTA
s gorGor5.CYUI01015946v1       269568 31 +    378907 -AGG-AATTATTGTTTTCATTTATCTG---AATTTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101795851 34 + 121039945 -AGG-AATTATTGTTTTCATTTATCTGACCAATTTA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106506657 31 - 171882078 -AGG-AATCGT---TTTCATTTATCTGACCGATTTA
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       296222 33 +   4111199 -AGG-AATCATTG-TTTCATTTATCTGACCGATTTA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 184702 34 -   2853901 -AAG-GATCATTGTTTTCGTTTATCTGACCAATTTA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             484383 34 -   3282555 -AAG-GATCATTGTTTTCATTTATCTGACCAATTTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       270550 34 -   1024465 -AAG-GATCATTGTTTTCATTTATCTGACCAATTTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       715577 34 -   3745603 -AAG-GATCATTGTTTTCATTTATCTGACCAATTTA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6741353 35 -  36342412 -AAGAAATCGTTGTTTTCATTTATCTGGCTAGTTTA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55155882 34 + 124595110 -AAG-ACTCATTGTTTTCATTTATTTGACCAGTTAA
i mm10.chr9                 I 7 C 0
s canFam3.chr30                 29384 34 -  40214260 -AGG-AATCATTGTTTTCAATCATCTGACCAATTTA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               6017 31 -   2180720 AAAG-AATCATTGTTTTCATT----TGACCAATTTA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 902841 51 - 119751181 I
e proCoq1.NW_012149419v1       626484 80 -   2566024 I
e panPan2.chr15              17202575  0 -  99763055 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971  0 +  24206276 C
e cerAty1.NW_012002657v1      1791734  0 -   1987038 C
e rheMac8.chr7               60335993  0 + 169600520 C
e panTro5.chr15              17976306  0 -  83230942 C

a score=146690.000000
s hg38.chr15_KI270850v1_alt    170969 26 +    430880 TAATATAGAGTCAAATTCCTAGTGGT
s gorGor5.CYUI01015946v1       269599 26 +    378907 TAATATAGAGTCAAATTCCTAGTGGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101795885 26 + 121039945 TAATATAGAGTCAAATTCCTAGTGAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106506688 26 - 171882078 TAATATAGGGTCAAATTCATAGTGGT
i macFas5.chr7              C 0 I 4
s colAng1.NW_012116021v1       296255 26 +   4111199 TAATATAGGGTCAAATTCATAGTGGT
i colAng1.NW_012116021v1    C 0 I 4
s calJac3.chrY                 184736 26 -   2853901 TAATATAGGGTCAAATTCTTAGTGGT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             484417 26 -   3282555 TAATATAGGGTCAAAGCCTTAGTGGT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       270584 26 -   1024465 TAATATAGGGTCAAATTCTTAATGAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       715611 26 -   3745603 TAATATAGGGTCAAATTCTTAGCGGT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 902892 26 - 119751181 TAATATAAGGTCAAATTCCTAGTGCT
i micMur3.chr3              I 51 I 4
s otoGar3.GL873530            6741388 21 -  36342412 -----TAATGTCAAAATCCTAGTGCT
i otoGar3.GL873530          C 0 I 4
s mm10.chr9                  55155916 26 + 124595110 TAATACAGGGTCAGATTCCATGTGGT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 29418 21 -  40214260 -----TAGAGTCAAATTCCTAGTCCT
i canFam3.chr30             C 0 I 4
s dasNov3.JH569975               6048 26 -   2180720 AAATATAGGGTCAGATTCTGAGCAGT
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       626484 80 -   2566024 I
e panPan2.chr15              17202575  0 -  99763055 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971  0 +  24206276 C
e cerAty1.NW_012002657v1      1791734  0 -   1987038 C
e rheMac8.chr7               60335993  0 + 169600520 C
e panTro5.chr15              17976306  0 -  83230942 C

a score=39165.000000
s hg38.chr15_KI270850v1_alt    170995 4 +    430880 TATC
s gorGor5.CYUI01015946v1       269625 4 +    378907 TATC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101795911 4 + 121039945 TATC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106506718 4 - 171882078 TATC
i macFas5.chr7              I 4 C 0
s colAng1.NW_012116021v1       296285 4 +   4111199 TATC
i colAng1.NW_012116021v1    I 4 C 0
s calJac3.chrY                 184762 4 -   2853901 TATC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             484443 4 -   3282555 TATC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       270610 4 -   1024465 TATC
i cebCap1.NW_016107979v1    C 0 I 11
s aotNan1.NW_018511953v1       715637 4 -   3745603 TATC
i aotNan1.NW_018511953v1    C 0 I 11
s micMur3.chr3                 902922 4 - 119751181 TATC
i micMur3.chr3              I 4 C 0
s proCoq1.NW_012149419v1       626564 4 -   2566024 TATC
i proCoq1.NW_012149419v1    I 80 C 0
s otoGar3.GL873530            6741413 4 -  36342412 TATC
i otoGar3.GL873530          I 4 C 0
s mm10.chr9                  55155942 4 + 124595110 TATC
i mm10.chr9                 C 0 I 4
s canFam3.chr30                 29443 4 -  40214260 TATC
i canFam3.chr30             I 4 I 4
s dasNov3.JH569975               6074 4 -   2180720 TATC
i dasNov3.JH569975          C 0 C 0
e panPan2.chr15              17202575 0 -  99763055 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971 0 +  24206276 C
e cerAty1.NW_012002657v1      1791734 0 -   1987038 C
e rheMac8.chr7               60335993 0 + 169600520 C
e panTro5.chr15              17976306 0 -  83230942 C

a score=20726.000000
s hg38.chr15_KI270850v1_alt    170999 13 +    430880 ----CTCTCTCA---TCCCC
s gorGor5.CYUI01015946v1       269629 13 +    378907 ----CTCTCTCA---TCCCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101795915 13 + 121039945 ----TTCCCTCA---TCCCC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106506722 13 - 171882078 ----CTCCCTCA---TCCCC
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       296289 13 +   4111199 ----CTCCCTCA---TCCCC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 184766 11 -   2853901 -----TATCTTC---TCTC-
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             484447 11 -   3282555 -----TATCTTC---TCTC-
i saiBol1.JH378276          C 0 C 0
s micMur3.chr3                 902926 13 - 119751181 ----CTCCCCCA---TCTCC
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       626568 13 -   2566024 ----CTCTTCCA---TCTCC
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6741417 16 -  36342412 ----TTGCCGCAGGGTCCCC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55155950 13 + 124595110 ----CTTCTCTA---TCTCC
i mm10.chr9                 I 4 C 0
s canFam3.chr30                 29451 13 -  40214260 ----CTCCCTTA---TTGCC
i canFam3.chr30             I 4 C 0
s dasNov3.JH569975               6078 17 -   2180720 TGTCTTCCTTCT---TTTCC
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       715641 11 -   3745603 I
e cebCap1.NW_016107979v1       270614 11 -   1024465 I
e panPan2.chr15              17202575  0 -  99763055 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971  0 +  24206276 C
e cerAty1.NW_012002657v1      1791734  0 -   1987038 C
e rheMac8.chr7               60335993  0 + 169600520 C
e panTro5.chr15              17976306  0 -  83230942 C

a score=322192.000000
s hg38.chr15_KI270850v1_alt    171012 46 +    430880 ATTTTTATAGCCTTCCTTGAAAGGAAC----AGGTATATGAAGAGGAGAC--
s gorGor5.CYUI01015946v1       269642 46 +    378907 ATTTTTATACCCTTCCTTGAAAGGAAC----AGGTATATGAAGAGGAGAC--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101795928 46 + 121039945 ATTTTTATACCCTTCCTTGAAAGGAAC----AGGTATATGAAGAGGAGAC--
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106506735 46 - 171882078 ATTTTTGTACCCTTCCTTGAAAGGAAC----ATATATATGAAGAAGATAC--
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       296302 46 +   4111199 ATTTTTGTACCCTTCCTTGAAAGGAAC----ATATATATGAAGAAGATAC--
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 184777 46 -   2853901 ATTTTTATACCCTTCCTTGAAAGGAAC----AGATACCTGAAGAGGAGAC--
i calJac3.chrY              C 0 I 2
s saiBol1.JH378276             484458 46 -   3282555 ATTTTTATACCCTTCCTTGAAAGGAAC----AGATACCTGAAGAGGAGAC--
i saiBol1.JH378276          C 0 I 2
s cebCap1.NW_016107979v1       270625 46 -   1024465 ATTTTTATACCCTTCCTTGAAAGGAAC----AGATACCTGAAGAGGAGAC--
i cebCap1.NW_016107979v1    I 11 I 105
s aotNan1.NW_018511953v1       715652 46 -   3745603 ATTTTTATACCCTTCCTTGAAAGGAGC----AGATACCTGAAGAGGAGAC--
i aotNan1.NW_018511953v1    I 11 I 2
s micMur3.chr3                 902939 46 - 119751181 ATTTTTATGCTCTTCCTTGAAAGGAAC----AGATATATAAATAGGAGAC--
i micMur3.chr3              C 0 I 2
s proCoq1.NW_012149419v1       626581 46 -   2566024 ATTTTTATGCCCTTCCTTGAAAGGAGC----AGATATATGAAGAGGAGAC--
i proCoq1.NW_012149419v1    C 0 I 2
s otoGar3.GL873530            6741433 46 -  36342412 ATTTTTATGCCCTTCCTTGAAAGGAAC----AAATATATGAAGAGGACCC--
i otoGar3.GL873530          C 0 I 2
s mm10.chr9                  55155963 45 + 124595110 ATTTTAATGCACTTTCTTGAGAGAAAT----GGGATTATGAAGAGGCTT---
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 29464 45 -  40214260 ATTTTTATACCCTTCCTTGAAAG-AAC----AGACATGTGAAAAAGAGAC--
i canFam3.chr30             C 0 I 2
s dasNov3.JH569975               6095 52 -   2180720 ATTTTTATGTCCTTTCTTGAAAGGAACAGATAGATATATGAAGAGGCAACTC
i dasNov3.JH569975          C 0 C 0
e panPan2.chr15              17202575  0 -  99763055 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971  0 +  24206276 C
e cerAty1.NW_012002657v1      1791734  0 -   1987038 C
e rheMac8.chr7               60335993  0 + 169600520 C
e panTro5.chr15              17976306  0 -  83230942 C

a score=-224.000000
s hg38.chr15_KI270850v1_alt    171058 2 +    430880 AG
s gorGor5.CYUI01015946v1       269688 2 +    378907 AG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101795974 2 + 121039945 AG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106506781 2 - 171882078 AT
i macFas5.chr7              C 0 C 0
s colAng1.NW_012116021v1       296348 2 +   4111199 AG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 184825 2 -   2853901 TG
i calJac3.chrY              I 2 C 0
s saiBol1.JH378276             484506 2 -   3282555 TG
i saiBol1.JH378276          I 2 C 0
s aotNan1.NW_018511953v1       715700 2 -   3745603 CG
i aotNan1.NW_018511953v1    I 2 C 0
s micMur3.chr3                 902987 2 - 119751181 AG
i micMur3.chr3              I 2 C 0
s proCoq1.NW_012149419v1       626629 2 -   2566024 AG
i proCoq1.NW_012149419v1    I 2 C 0
s otoGar3.GL873530            6741481 1 -  36342412 A-
i otoGar3.GL873530          I 2 C 0
s mm10.chr9                  55156008 1 + 124595110 -G
i mm10.chr9                 C 0 I 1
s canFam3.chr30                 29511 2 -  40214260 AG
i canFam3.chr30             I 2 C 0
s dasNov3.JH569975               6147 2 -   2180720 AG
i dasNov3.JH569975          C 0 C 0
e cebCap1.NW_016107979v1       270671 105 -   1024465 I
e panPan2.chr15              17202575 0 -  99763055 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971 0 +  24206276 C
e cerAty1.NW_012002657v1      1791734 0 -   1987038 C
e rheMac8.chr7               60335993 0 + 169600520 C
e panTro5.chr15              17976306 0 -  83230942 C

a score=649370.000000
s hg38.chr15_KI270850v1_alt    171060 157 +    430880 GTTTCCCTTTTGTGA------ATAGT-ATATCCCTTAGTATCTTGATTTTTTT-----TGGTG-----GGAGTC-GGGGGAGTTAAACTTACTTAGACCTGGTAAAGGGCAGTATTTGATAAATGTCAGCTAG--------------TTTAGGGT-----TAGGGAATTGAG-------------------------------------------------------------TTGAATGGAGATAGTCACTGCC
s gorGor5.CYUI01015946v1       269690 157 +    378907 GTTTCCCTTTTGTGA------ATAGT-ATATCCCTTAGTATCTTGATTTTTTT-----TGGTG-----GGAGTC-GGGGGAGTTAAACTTACTTAGACCTGGTAAAGGGCAGTATTTGATAAATGTCAGCTAG--------------TTTAGGGT-----TAGGGAATTGAG-------------------------------------------------------------TTGAATGGAGATAGTCACTGCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101795976 163 + 121039945 GTTTCCCTTTTGTGA------ATAGT-ATATCCCTTAGTATCTTGATTTTTTTGGGGGGGGTG-----GGGGTTGGGGGGAGTTAAACTTACTTAGACCTGGTAAAGGGCAGTATTTGATAAATGTCAGCTAG--------------TTTAGGGT-----TAGGGAATTGAG-------------------------------------------------------------TTGAATGGAGATAGTCACTGCC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106506783 158 - 171882078 GTTTCCCTTTTGTGA------ATAGT-ATATCCCTTAGTATCTTGATTTTTTT---CTTAGTG-----TGGGG--GGCACAGTTAAACTTACTTAGACTTGATAAAGGGCAGTATTTGATAAATGTCAGCTAG--------------TTGAGGGG-----TAGGGAATTGAG-------------------------------------------------------------TTGACTGGAGATAGTCACTGCC
i macFas5.chr7              C 0 n 0
s colAng1.NW_012116021v1       296350 158 +   4111199 GTTTCCCTTTTGTGA------ATAGT-ATATCCCTTAGTATCTTGATTTTTTT---CTTAGTG-----TGGGG--GGCGCGGTTAAACTTACTTAGACTTGATAAAGGGCAGTATTTGATACATGTCAGCTAG--------------TTGAGGAG-----TAGGGAATAGAG-------------------------------------------------------------TTGACTGGAGATAGTCACTGCC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 184827 154 -   2853901 CTTTCCCTTTTGCGA------ATAGT-ATATCCCTTAGTATCTTGATTTTTGT-----TGGTG-----GTGGT--GGTG--GTTAAACTTACTTCGACTTGGAAAAGGGTAGTGTTTGATAAATGTCAGCTAG--------------TCGAGGGT-----TGGGGAATTGAG-------------------------------------------------------------TTGAATAAAGATAGTCACTGTC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             484508 135 -   3282555 GTTTCCCTTTTGTGA------ATAGT-ATATCCCTTAGTATCTTGATTTTTGT--------TG-----CTGGT--GGTG--GTTAAACTTACTTAGACTTGGAAAAGG----------------GTCGGCTAG--------------TTGAGGGG-----TGGGGAATTGAG-------------------------------------------------------------TTGAATGAAGATAGTCACTGCC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       270776 154 -   1024465 GTTTCCCTTTTGTGA------ATAGT-ATATCCCTTAGTATCTTGATTTTTGT-----TGTTG-----GTGGT--GGTG--GTTAAACTTACTTAGACTTGGAAAAGGGTAGTGTTTGATAAATGTCAGCTAG--------------TTGAGGGG-----TGGAGAATTGAG-------------------------------------------------------------TTGAATGAAGATAGTCACTGCC
i cebCap1.NW_016107979v1    I 105 C 0
s aotNan1.NW_018511953v1       715702 153 -   3745603 GTTTCCCTTTTGTGA------ATAGT-ATATCCCTTCGTATCTTGATTTTTGC-----TGTTG-----GTGGT--GGTG--GTTAAACTTACTTAGACTTGGAAAAGGGTAGTGTTTGATAAAT-TCAGCTAG--------------TTGAGGGG-----TGGGGAATTGAG-------------------------------------------------------------TTGAATGAAGATAGTCACTGCC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 902989 145 - 119751181 GTTTCTCTTTTATGA------ATGGT-GTATCCCTTAATAACTT-CATTTTTT-------------------T--GTTGTTGTTAAACTCACTTAGACCTGGAAAATGGTAGCATTAGCTAAATGTCAGCTAG--------------TTGAGGGG-----T-GGGAATTGAA-------------------------------------------------------------TTGAATTGAAATAGTCACCGTG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       626631 137 -   2566024 GTTTCCCTTTTATGA------ATGGT-ATATCCCTT----------TCTTTTT-------------------T--TTTTTTGTTAAACTCACTTAGACCTGGAAAATGGTAGCATTAGCTAAATGTCAGCTAG--------------TTGAGGGG-----TGGGGAATTGAA-------------------------------------------------------------TTGAATTGAAATAGTCACCATG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6741482 133 -  36342412 GTTTCTCTTTGGTGA------ATGGT-ATATCCCTCAATAA-----CTTTTTT---GGGGGGT-----GAGGT--GGGGGGGTTAA----TCTTAGA--TGGAAAAGAGTAGTA--AGGTGAATGTCAGCTCA--------------TTGAGGAG-----TGGGCAAATGAA-------------------------------------------------------------TTGCA-------AGCCA-----
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55156010 140 + 124595110 GTTTCCTTTTTATGA------ATGATGGTATACGTTAGTAA----GTTTTTGG-----TGATGTCTGCAGGGT--GGGAGTGTTAA----ACTTAGACCTGGCAAGGAGTAGTGTTGGATAAGTGTCAGGTAA--------------TCGAGGGA-----GGGAG-------------------------------------------------------------------------TAGAGACAG--AATGCT
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 29513 152 -  40214260 GTTTCCATTTTATGA------ATGGT-GTATCCCTGAGTAACTTGATGTTTTT----GTTGTT-----GTTTT--GTTTTTGTTAAACTTCCTTAGACCTGGGAAAGGATAGTATTAGATGGATGTCAGCTAG--------------TGGAGAGG-----TGGGGACTTGAA-------------------------------------------------------------CTGAA-----ACAGTCACTGCC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               6149 234 -   2180720 GAATCCCTTTTATGAATGTGTATGAT-GTATCCCTTAGTAACTTTATAGTTTT--------TT-----TTTTT--G-----GTTAAACTTCTGTAGACCTGGTAAAGGATAATATTAGATAGGTGAGGGGTGGGGATTTTTtttttttttagggaggaaccaggggattgaaccctgaaccttgtacatgcaaagcaggtgctcaaccactgagccacacccgctccccCGACTTAAATAATTGACATCACTGCC
i dasNov3.JH569975          C 0 C 0
e panPan2.chr15              17202575   0 -  99763055 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3815971   0 +  24206276 C
e cerAty1.NW_012002657v1      1791734   0 -   1987038 C
e rheMac8.chr7               60335993   0 + 169600520 C
e panTro5.chr15              17976306   0 -  83230942 C

a score=534594.000000
s hg38.chr15_KI270850v1_alt    171217 47 +    430880 AAATGTAAAGCATGACTGGAGAGCCAGAG-----------------TGATGAAGCCAGGGT--CCC
s panTro5.chr15              17976306 47 -  83230942 AAATGTAAAGCATGACTGGAGAGCCAGAG-----------------TGATGAAGCCAGGGT--CCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202575 47 -  99763055 AAATGTAAAGCATGACTGGAGAGCCAGAG-----------------TGATGAAGCCAGGGT--CCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       269847 47 +    378907 AAATGTAAAGCATGACTGGAGAGCCAGAG-----------------TGATGAAGCCAGGGT--CCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101796139 47 + 121039945 AAATGTAAAGCATGACTGGAGAGCCACAG-----------------TGATGAAGCCGGGGT--CCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60335993 47 + 169600520 AAATGTAAAGCATGCCTGGAGAGCCAGAG-----------------TGGTAAAGCCAGGGT--CCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65240657 64 + 171882078 AAATGTAAAGCATGACTGGAGAGCCAGAGCATCAAGCCAGCTGGCTTTATCAAGCCAGCAT--CCC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1791734 47 -   1987038 AAATGTAAAGCATGCCTGGAGAGCCAGAG-----------------TGGTAAAGCCAGGGT--CCC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3815971 47 +  24206276 AAATGTAAAGCATGACTGGAGAGCCAGAG-----------------TGATAAAGCCAGCAT--CCC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       296508 47 +   4111199 AAATGTAAAGCATGACTGGAGAACCAGAG-----------------TGATGAAGCCAGGGT--CCC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 184981 47 -   2853901 AAATGTAAAGCATAACCGGAGAGCCAGAG-----------------TGATAAAGCAGGGGT--CCC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             484643 46 -   3282555 AAATGTAAAGCATGACTGGAGAGCCAGAG-----------------TGATAAAGCAAGGGT---CC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       270930 47 -   1024465 AAATGTAAAGCATGACTGGAGAGCCACAG-----------------TCTTAAAGCAAGGGT--CCC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       715855 47 -   3745603 AAATGTAAAGCATGACTGGAGAACTGGAG-----------------TGATAAAGCAAGGGT--CCC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 903134 47 - 119751181 AAATGTAAAGTATTACTGGAGAGCCAGAG-----------------TGATAAAGCAGGGGT--CCT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       626768 46 -   2566024 AAATGTAGAGCATGACTGGAGAGCCAGGG-----------------TGTTAAA-CAGGGGT--CCT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6741615 42 -  36342412 -----TAAAGCACTCCTGGAGAGCCAGAG-----------------TGATAAAGGATGGGT--CCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55156150 43 + 124595110 AACTATAAAACATTACAGGAGAG-----------------------AAACACAACAAGGCTTGCCC
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 29665 45 -  40214260 AAACGTAAAGCATTCCTGGAGAGCCAGGG------------------GATGAAGC-AGAGT--CCC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               6383 46 -   2180720 CAATGTAAAGCTTTACTATAGACTAAGAG-----------------TAATAAAGC-AGGGT--Ccc
i dasNov3.JH569975          C 0 I 1400
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=504871.000000
s hg38.chr15_KI270850v1_alt    171264  49 +    430880 TTTC---TCCAGATCCTTTGTAACAGTGTTATG---TGATCTC--TTCTAGA-------------------------------------------------------------------------------------AGATC
s panTro5.chr15              17976353  49 -  83230942 TTTC---TCCAGATCCTTTGTAACAGTGTTATG---TGATCTC--TTCTAGA-------------------------------------------------------------------------------------AGATC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202622  49 -  99763055 TTTC---TCCAGATCCTTTGTAACAGTGTTATG---TGATCTC--TTCTAGA-------------------------------------------------------------------------------------AGATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       269894  49 +    378907 TTTC---TCCAGATCCTTTGTTACAGTGTTATG---TGATCTC--TTCTAGA-------------------------------------------------------------------------------------AGATC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101796186  49 + 121039945 TTTC---TCCAGATCCTTTGTAACAGTGTTATG---TGATCTC--TTCTAGA-------------------------------------------------------------------------------------AGATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60336040  49 + 169600520 TTTC---TCCAGATCCTTTGTAACAGTGTTATG---TGATCTC--TTCTAGA-------------------------------------------------------------------------------------AGATC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65240721  49 + 171882078 TCTC---CCCAGATCCTTTGTAACAGTGTTATG---TAATCTT--TTCTAGA-------------------------------------------------------------------------------------AGATC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1791781  49 -   1987038 TTTC---TCCAGATCCTTTGTAACAGTGTTATG---TGATCTC--TTCTAGA-------------------------------------------------------------------------------------AAATC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3816018  49 +  24206276 TTTC---CCCAGATCCTTTGTAACAGTGTTATG---TAATCTT--TTCTAGA-------------------------------------------------------------------------------------AGATC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       296555  49 +   4111199 TCTC---TTCAGATCCTTTGTAACAGTGTTATG---TGATCTC--TTCTAGA-------------------------------------------------------------------------------------AGATC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 185028  48 -   2853901 CAT----TCCAGATCCTTTGTAACAGTGTTATG---TGATCTC--TTCTAGA-------------------------------------------------------------------------------------AGATC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             484689  48 -   3282555 CAT----TCCAGATCCTTTGTAACAGTGTCATG---TGATCTC--TTGTAGA-------------------------------------------------------------------------------------AGATC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       270977  48 -   1024465 CAT----TCCAGATCCTTTGTAACAGTGTTATG---TGTTCTC--TTCTAGA-------------------------------------------------------------------------------------AGATC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       715902  48 -   3745603 CAT----TCCAGATCCTTTGTAACAGTGTTATG---TGATCTC--TTCTAGA-------------------------------------------------------------------------------------AGATC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 903181  52 - 119751181 TTTTTTCCCCAAGTCCTTTGTAACAGTGTTATG---TGATCTC--TTCTAGA-------------------------------------------------------------------------------------AGATC
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       626814  51 -   2566024 TTTTTT-CCCAAGTCCTTTGTGACAGTGTTATG---TGATCTC--TTCTAGA-------------------------------------------------------------------------------------AGATC
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6741657 134 -  36342412 TTTC---CCCAAGTCCTTTCTAACAGTGTTAAG---TGATTTC--TTCtagatcagtggttctctaccttcctaatgccacagccctgtaatacaattcctgtgggtcacaacccacacgttgagaaccactgttCTAGATc
i otoGar3.GL873530          C 0 I 155
s mm10.chr9                  55156193  48 + 124595110 CTAC---CCCAAGGCTTTTGTAATAGTGGTCTC---TAATAGC--TTCTA-A-------------------------------------------------------------------------------------AGATA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 29710  54 -  40214260 TGTT---TCCAAGGCCATTGTAACAGTGCTCTGCTCTGTTCTCTGTTCTAAG-------------------------------------------------------------------------------------GGATT
i canFam3.chr30             C 0 C 0
e dasNov3.JH569975               6429 1400 -   2180720 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=1274903.000000
s hg38.chr15_KI270850v1_alt    171313 118 +    430880 GTGCTGAAAGATAATGCCAACTCAGAACCTAGGAAACCATCCAGTGGGTTTCTGCAGCTTAGGTGTTTCAAATCCTCATCAGCAGGTTCGTTTTCTCTGCCTCAGTTTGCT--TACAATG
s panTro5.chr15              17976402 118 -  83230942 GTTCTGAAAGATAATGCCAACTCGGAACCTAGGAAACCACCTAGTGGGTTTCTGCAGCTTAGGTGGTTCAAATCCTCATCAGCACCTTTGTTTTCTCTGCCTCAGTTTGCT--AACAATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202671 118 -  99763055 GTTCTGAAAGATAATGCCAACTCGGAACCTAGGAAACCACCTAGTGGGTTTCTGCAGCTTAGGTGGTTCAAATCCTCATCAGCACCTTTGTTTTCTCTGCCTCAGTTTGCT--AACAATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       269943 118 +    378907 GTTCTGAAAGATAATGCCGACTCGGAACCTAGGAAACCATCCAGTGGGTTTCTGCAGCTTAGGTGGTTCAAATCCTCATCAGCACGTTTGTTTTCTCTGCCTCAGTTTGCT--TACGATG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101796235 118 + 121039945 CTTCTGAAAGATAATGCCAACTCGGAACCTGGGAAACCATCCAGTGGGTTTCTGCGGCTTAGGTGGTTCAAATCCTGATCAGCACCTTTGTTTTCTCTGCCTCAGTTTGCT--TACAATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60336089 118 + 169600520 GTTCTGAAAGATAATGCCAACTTGAAACCTAGGAAACCATCTAGTGGGTTTCTGCAGCTTAGGTGGTTCAAATCCTCATCAGCACCTTTGTTTTCTCTGCCTCAGTTTGCT--TACAATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65240770 118 + 171882078 GTTCTGAAAGATAATGCCAACTTGGAACCTAGGAAACCATCTAGTGGGTTTCTGCAGGTTCGGTGGTTCAAATCCTCATCAGCACCTTTGTTTTCTCTGCCTTAGTTTGCT--TACAATG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1791830 118 -   1987038 GTTCTGAAAGATAATGCCAGCTTGAAACCTAGGAAACCATCTAGTGGGTTTCTGCAGCTTAGGTGGTTCAAATCCTCCTCAGCACCTTTGTTATCTCTGCCTCAGTTTGCT--TACAATG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3816067 118 +  24206276 GTTCTGAAAGATAATGCCAACTTGGAACCTAGGAAACCATCTAGTGGGTTTCTGCAGGTTAGGTGGTTCAAATCCTCATCAGCACCTTTGTTTTCTCTGCCTTAGTTTGCT--TACAATG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       296604 118 +   4111199 ATCCTGAAAGATAATGCCAACTCGGAACCTAGGAAACCATCCAGCGGGTTTCTGCAGGTTAGGTGGTTCAAATCCTCTTCAGCATGTTGGTTTTCTCTGCCTCAGTTTGCT--TACAATG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 185076  87 -   2853901 GTTCTGGAAGAAAATGCCAACTCGGAACCTA-------------------------------GTGGTTCAGATCGTCATTAGCACATTTGTTTTTTCTGCCTCAGTTTGCT--TATAATG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             484737 118 -   3282555 GTTCTGAAAGATAATGCCAACTTGGAACCCAGGAAACCATCCAGTGGGTTTCTGCAGCTTAGGTGGTTCAAATCGTCATCAGCACATTTGTTTTCTCTGCCTCGGTTTGCT--TATAATC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271025 118 -   1024465 GTTCTGAAAGATAATGCCAACTCGGAACCTAGGAAACCATACAGAGGGTTTCTGCAGCTTAGGTGGTTCAAATCGTCATCAGCACATTTGTTTTCTCTACTTC--TTTGCTTATATAATG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       715950 118 -   3745603 GTTCTGAAAGATAATGCCAACTCGGAACCTAGGAAACCATCCAGTGGGTTTCTGCAGCTTAGGTGGTTCATATCGTCATCAGCACATTTGTTTTCTCTGCCTCAGTTTGCT--TATAATG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 903233 108 - 119751181 ATTCTGAAAGA---------CTCAGAACCAAGGAATCCATCCAGTGGGTTTCAGCAGCTTAGGTGGTTCAAAT-CTCTTTAGCACCTTTGTTTTCTCTGCCTCAGTTCACT--TAGAATG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       626865 109 -   2566024 ATTCTGAAAGA---------CTCAGAACCAAGGAAACCATCCAGTGGGTTTTAGCAGCCTAGGTGGTTCAAATCCTCTTTAGCACCTTTGTTTTCTCTGCCTCAGTTCACT--TAGAATG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6741946 107 -  36342412 ATTCTG--AGA---------CTCAGAACCAAAGAAACTATCCAGTGGGTTTCTGCAGCTCAGGTGGTTCAAATCCTCTCTAGCACCTTTGTTTTCTCTGCCTCAGTTCACT--TAGAGTG
i otoGar3.GL873530          I 155 C 0
s mm10.chr9                  55156241 112 + 124595110 ATTATGAAAAACAATGGCTAATCAGAGCTACAGAAATCATCCAG-GGGAATTTGCAGCCTAGTTGATTCAGATCAATTTCA------TTATTTTATCTGCCTTAGTTCATTT-TAGAAAA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 29764 117 -  40214260 ATTCTGAAAGACAAAGTAGACTCAGAACCAAGGAAACTGTCCA-TTGGTTTCTGCAGATCAGGTGGTTTGGATCTTCTCCAGCATCTTTATTTTCTCTGCCTCAGTTTAAT--TAGAATG
i canFam3.chr30             C 0 C 0
e dasNov3.JH569975               6429 1400 -   2180720 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=481534.000000
s hg38.chr15_KI270850v1_alt    171431 51 +    430880 ATGTTCTCAGTAGCTGTAA-TTGCTGTCTGTCTTTGAATACTTAAGCA-TTTT
s panTro5.chr15              17976520 46 -  83230942 ATGTTCTCAGTAGCTGTAA-TTG----CTGTCTTTGAATACTTAAGCA-TTT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202789 46 -  99763055 ATGTTCTCAGTAGCTGTAA-TTG----CTGTCTTTGAATACTTAAGCA-TTT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       270061 47 +    378907 ATGTTCTCAGTAGCTGTAA-TTG----CTGTCTTTGAATACTTAAGCA-TTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101796353 51 + 121039945 ATGTTCTCAATAGCTGTAA-TTGCTGTCTGTCTTTGAATACATAAGCA-TTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60336207 51 + 169600520 ATGTTCTCAGTAGCTGTAA-TTGCTGTCTATCTTTGAATACTTAAGCA-TTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65240888 50 + 171882078 ATGTTCTCAGTAGCTATAA-TTGCTGTCTGTCTTTGAATACTTAAGCA--TTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1791948 51 -   1987038 ATGTTCTCAGTAGCTGTAA-TTGCTGTCTATCTTTGAATACTTAAGCA-TTTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3816185 52 +  24206276 ATGTTCTCAGTAGCTATAA-TTGCTGTCTGTCTTTGAATACTTAAGCATTTTT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       296722 51 +   4111199 ATGTTCTCAGTAGCTGTAA-TTGCTGTCTGTCTTTGAATACTTAAGCA-TTTT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 185163 49 -   2853901 ATGTTCTC---AGCTGAAATTTGCTGCTTGTGTTTGACTACTGAAGCA-TTTT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             484855 52 -   3282555 ATTTTCTCAGTAGCTGAAATTTGCTGCTTGTGTTTGACTACTGAAGCA-TTTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271143 52 -   1024465 GTGTTCTCAGTAGCTGAAATTTGCTGCTTGTGTTTGACTACCGAAGCA-TTTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       716068 52 -   3745603 ATGTTCTCAGTAGCTGAAATTTGCTGCTTGTGTTTGATTACTGAAGCA-TTTT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 903341 49 - 119751181 ATGTTATCAGTAACTGTAATTTGCTTCCTGTCTTTGGATACTTAAGCA----T
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       626974 52 -   2566024 ATGTTCTGAGTCACTGTAATTTTCTCCCTGTCTTTGGATACTTAAGCA-TTTT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6742053 52 -  36342412 ATGTTCTGAGTAGCTGTAATTTGTTGCCTGTGTTTGGATACTTAAGCA-TTTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55156353 51 + 124595110 ATATTCTGAGTATATGTAATTTGTTCTCTACCTTAG-CTAGTTAAGCA-ACTT
i mm10.chr9                 C 0 I 1
s canFam3.chr30                 29881 45 -  40214260 ATGTTTTGATTAGCTGCGATTTGCTA-----CTCAAAACACTTAAGCA-TT--
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               7829 50 -   2180720 ATGTTCTGAATAACT--AATTTGCTAACTATCTTTGTATAAGTAAACA-TTTC
i dasNov3.JH569975          I 1400 C 0
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=22897.000000
s hg38.chr15_KI270850v1_alt    171482 14 +    430880 ATTTTAGCTCACAG
s panTro5.chr15              17976566 13 -  83230942 -TTTTAGATGACAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202835 13 -  99763055 -TTTTAGATGACAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       270108 14 +    378907 ATTTTAGCTCACAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101796404 13 + 121039945 -TTTTAGCTCACAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60336258 13 + 169600520 -TTTTAGATCACAG
i rheMac8.chr7              C 0 I 721
s macFas5.chr7               65240938 13 + 171882078 -TTTTAGATGACAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1791999 13 -   1987038 -TTTTAGATCACAG
i cerAty1.NW_012002657v1    C 0 I 739
s chlSab2.chr29               3816237 13 +  24206276 -TTTTAGATGACAG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       296773 13 +   4111199 -TTTTAGCCCACAC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 185212 11 -   2853901 -CTTTTTATTGT--
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             484907 11 -   3282555 -CTTTTTATCAT--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271195 11 -   1024465 -CTTTTTATCAT--
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       716120 11 -   3745603 -CTTTTTGTCAT--
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 903390 12 - 119751181 -TTTAAATTCACA-
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       627026 12 -   2566024 -TTTAAAGTCACA-
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6742105 11 -  36342412 -TTTAAA-TCATA-
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 29926 12 -  40214260 -TTTCAGATCACA-
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               7879  9 -   2180720 -----AGATCACAG
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55156404  1 + 124595110 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=78457.000000
s hg38.chr15_KI270850v1_alt    171496  9 +    430880 GGGTATG--TA
s panTro5.chr15              17976579  9 -  83230942 GGATATA--TG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202848  9 -  99763055 GGATATA--TG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       270122  9 +    378907 GGGTATG--TA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101796417  9 + 121039945 GGGTATG--TA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65240951  9 + 171882078 GGATATA--TG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3816250  9 +  24206276 GGATATA--TG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       296786  9 +   4111199 GGGTATG--TA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 185223  9 -   2853901 GGGTATA--TA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             484918  9 -   3282555 GGGTATA--TA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271206  9 -   1024465 GGGTATA--TA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       716131  9 -   3745603 GGGTATA--TA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 903402  9 - 119751181 CAGTATG--TA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       627038  9 -   2566024 GGGTATG--TA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6742116 11 -  36342412 GGGTATATTTA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 29938  9 -  40214260 GGGTATG--TA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               7888  8 -   2180720 -GGTATG--TA
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55156404  1 + 124595110 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012002657v1      1792012 739 -   1987038 I
e rheMac8.chr7               60336271 721 + 169600520 I

a score=159469.000000
s hg38.chr15_KI270850v1_alt    171505 18 +    430880 TGCA---TTTTTCTTTTACCA
s panTro5.chr15              17976588 18 -  83230942 TGCA---TTTTAATTTTACCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202857 18 -  99763055 TGCA---TTTTAATTTTACCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       270131 18 +    378907 TGCA---TTTTTCTTTTACCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101796426 21 + 121039945 TGCATTTTTTTTTTTTTACCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60336992 18 + 169600520 TGCA---TTTTTATTTGACTG
i rheMac8.chr7              I 721 C 0
s macFas5.chr7               65240960 18 + 171882078 TGCA---TTTTTATTTTATCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3816259 18 +  24206276 TGCA---TTTTTATTTTATCA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       296795 18 +   4111199 TGCA---TTTTTATTTTACCA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 185232 18 -   2853901 AACA---TTTTTATTTTAACA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             484927 17 -   3282555 AACA---TTTTTATTTT-ATA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271215 18 -   1024465 AACA---TTTTTATTTTAACA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       716140 18 -   3745603 AACA---TTTTTATTTTAACA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 903411 18 - 119751181 TGTA---TTTTTCTTTTACCA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       627047 18 -   2566024 TATA---TTTTTCTTTTACCA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6742127 18 -  36342412 TGCA---TTTTTCTTTAACCA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 29947 18 -  40214260 TGCA---TTTTTCTTTTACCA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               7896 18 -   2180720 TGCA---TTTTTCTTTTAGCA
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55156404  1 + 124595110 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012002657v1      1792012 739 -   1987038 I

a score=159163.000000
s hg38.chr15_KI270850v1_alt    171523 18 +    430880 AGTGTTAGAACTTTGACT
s panTro5.chr15              17976606 18 -  83230942 AGTGTTAGAATTTTTACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202875 18 -  99763055 AGTGTTAGAATTTTTACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       270149 18 +    378907 AGTGTTAGAACTTTGACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101796447 18 + 121039945 AGTGTTAGAACTTTGACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60337010 18 + 169600520 AGTGTTAGAATTTTTACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65240978 18 + 171882078 AGAGATAGAATTTTTACT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1792751 18 -   1987038 AGTGTTAGAATTTTTACT
i cerAty1.NW_012002657v1    I 739 C 0
s chlSab2.chr29               3816277 18 +  24206276 AGAGATAGAATTTTTACT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       296813 17 +   4111199 AGTCTTAGAA-CTTGACC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 185250 18 -   2853901 AGTTTTAGAATTTTTCCT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             484944 18 -   3282555 AGTGTTAGAATTTTTCCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271233 18 -   1024465 AGTGTTAGAATTTTTCCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       716158 18 -   3745603 AGTGTTAGAATTTTTCCT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 903429 18 - 119751181 AGTGTTTGTACTTCTACT
i micMur3.chr3              C 0 I 42
s proCoq1.NW_012149419v1       627065 18 -   2566024 AGTGTTAGTACTTTTGCT
i proCoq1.NW_012149419v1    C 0 I 2
s otoGar3.GL873530            6742145 18 -  36342412 AGTGTTAATACTTTTACT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 29965 17 -  40214260 AGTGTT-GATTTTTCACT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               7914 18 -   2180720 CGCTTTCCTGTTTTTATT
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55156404  1 + 124595110 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=336025.000000
s hg38.chr15_KI270850v1_alt    171541 42 +    430880 CTG--CTTTTGTGGGCTCTGG----GTTAGCAACTTGGTTGTTTAGTT
s panTro5.chr15              17976624 42 -  83230942 CTG--CTTTTGTGGGCTCTGG----GTTAGCTACTTGGTTGTTTAGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202893 42 -  99763055 CTG--CTTTTGTGGGCTCTGG----GTTAGCTACTTGGTTGTTTAGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       270167 42 +    378907 CTG--CTTTTGTGGGCTCTGG----TTTAGCAACTTGGTTGTTTAGTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101796465 42 + 121039945 CTG--CTTTTGTGGGCTCTGG----GTTAGCAACTTGGTTGTTTAGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60337028 42 + 169600520 CTG--CTTTTGTGGGCTCTGG----GTTTACTACTTGGTTGTTTAGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65240996 41 + 171882078 CTG--CTTTTGTGGGCTCT-G----GTTAGCTTATTGGTTGTTTAGTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1792769 42 -   1987038 CTG--CTTTTGTGGGCTCTGG----GTTTGCTACTTGGTTGTTTAGTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3816295 41 +  24206276 CTG--CTTTTGTGGGCTCTGG----GTTAGCTTATTGGTT-TTTAGTT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       296830 42 +   4111199 CTC--CTTTTGTGGGCTCTGG----GTTAGCAACTTGGTTGTTTAGTT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 185268 42 -   2853901 CTG--CTTTAGTCGGCTCTAC----CTTAGCTACTTGGTTGTCTGTTT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             484962 42 -   3282555 CTG--CTTTTGTCGGCTCTAC----CTTATTTACTTGGTTGTCTATTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271251 42 -   1024465 CTG--CTTTTGTCGGCTCTAC----CTTAGCTGCTTGGTTGTCTATTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       716176 42 -   3745603 CTG--CTTTTGTGGGCTCTAC----CTTAGCTACTTGGTTGTCTATTT
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       627085 40 -   2566024 CAGCTAGTATATGGGTTCTGG----GCTAGCTACTTGATTACTT----
i proCoq1.NW_012149419v1    I 2 C 0
s otoGar3.GL873530            6742163 42 -  36342412 CAG--ATTTTGTGGGTTCTGG----GTTAGGTACTTGATTGCTTACTT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 29982 42 -  40214260 CTG--CTTCTCTGGGCTCTGA----TCAAGTTACTTCGTTGTTTGCTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               7932 41 -   2180720 CTG---TTCTGTGGGCTCAGAGCATGTTAGATACTTGTTTGCTT----
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 903447 42 - 119751181 I
e mm10.chr9                  55156404  1 + 124595110 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=1629399.000000
s hg38.chr15_KI270850v1_alt    171583 218 +    430880 GTAAAATGATTAGCAGGGAAAACCgt----------------------------------------gtgtgtgtgtgtgtg---------tgtgtgtgtgtg--------------------------------------tgtg--------tgtgtgtgtgtATTTTAAGTTTCT------------------------TTTGTTGTCAGAG----CACTTCGA-----ATT--------TTATGTGGAAATTC---TGTCAGTTTACTTGATTCTCCACCCCACAGTTAT-TGAACAGG-AAAGTGTGAAGGTAACGCGTCCCATAACCAGCCTTCAGAAGAATT-ACAGCTGCTGTA
s panTro5.chr15              17976666 223 -  83230942 GTAAAATGATTAGCAAGGAAAACTCt----------------------------------------gtgtgtgtgtgtgtg---------tgtgtgtgtgtg--------------------------------------tgtg--------tgtgtgtatgtgtTATAACTTTCT------------------------TTTGTTGTCAGAG----GACTTAGAATTTTATT--------TTATATGGTAATTC---TGTCAATTTACTTTATTCTCCACCCCACATTTAT-TGAACAGC-AAAGTATGAAAGTAACGTGTCCCATAACCAGCCTTCAGAAAAGTT-ACAACTGCTGTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17202935 198 -  99763055 GTAAAATGATTAGCAAGGAAAACTCt----------------------------------------gtgtgtgtgtgtgtg---------tgtgtgtgtgtg--------------------------------------tgtg---------------------------------------------------------tTGTTGTCAGAG----GACTTCGAATTTTATT--------TTATATGGTAATTC---TGTCAATTTACTTTATTCTCCACCCCACATTTAT-TGAACAGC-AAAGTATGAAAGTAACGTGTCCCATAACCAGCCTTCAGAAAAGTT-ACAACTGCTGTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       270209 218 +    378907 GTAAAATGATTAGCAGGGAAAACCgt----------------------------------------gtgtgtgtgtgtgtg---------tgtgtgtgtgtg--------------------------------------tgtg--------tgtgtgtgtgtATTTTAAGTTTCT------------------------TTTGTTGTCAGAG----CACTTCGA-----ATT--------TTATGTGGAAATTC---TATCAGTTTACTTGATTCTCCACCCCACAGTTAT-TGAACAGG-AAAGTGTGAAGTTAATGCGTCCCATAACCAGCCTTCAGAAGAATT-ACAGCTGCTGTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101796507 226 + 121039945 GTAAAATGATTAGCAGGGAAAACCgt----------------------------------------gtgtgtgtgtgtgtg---------tgtgtgtgtgtg--------------------------------------tgtgtgtgtgtgtgtgtgtgtgtATTTTAAGTTTCG------------------------TTTGTTGTCAGGG----CACTTAGA-----ATT--------TTATATGGAAATTC---TGTCAGTTTACTTGATTCTCCACCCCACATTTAT-TGAGCAGC-AAAGTGTGAAGGTAAGGTGTCCCATAACCAGCCTTCAGAAGAATT-ACAGCTGCTGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60337070 222 + 169600520 GTAAAATGATTAGCTAGGAAAACCgt--------------------------------------gtgcgtgtgtgtgtgtg---------tgtgtgtgtgtg--------------------------------------tgtg--------tgtgtgtgtgtATTTTAAGTTTCT------------------------T---TTGTCAGAG----CAGTTAGAATTTTGTT--------TTATATGGTAATTT---TGTCAGTTTACTTTATTCATCACCCCACATTTAT-TGAACAGC-AAAGTACGAAAGTAATGAGCCCCATAACCAGCCTTCAGAAGAATT-ACAACTGCTGTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65241037 218 + 171882078 GTAAAATGATTAG---GGAAAGCCgt------------------------------------------gtgtgtgtgtgtg---------tgtgtgtgtgtg--------------------------------------tgtg--------tgtgtgtgtgtATTTTAAGTTTCT------------------------TTTGTTGTCAGAG----GACTTAGAATTTTATT--------TTATATGGTAATTC---TGACAATTTACTTTATTCTCCACCCCACATTTAT-TGAACAAC-AAAGTATGAAAGTAATGTGTCCCATAACCAGCCTTCAGAAGAATT-ACAGCTGCTGTA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1792811 222 -   1987038 GTAAAATGATTAGCTAGGAAAACCgt--------------------------------------gtgtgtgtgtgtgtgtg---------tgtgtgtgtgtg--------------------------------------tgtg--------tgtgtgtgtgtATTTTAAGTTTCT------------------------T---TTGTCAGAG----CAGTTAGAATTTTGTT--------TTATATGGTAATTT---TGTCAGTTTACTTTATTCATCACCGCACGTTTAT-TGAACAGC-AAAGTATGAAAGTAATGAGCCCCATAACCAGCCTTCAGAAGAATT-ACAACTGCTGTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3816336 208 +  24206276 GTAAAATGATTAG---GGAAAACtgt----------------------------------------------------gtg---------tgtgtgtgtgtg--------------------------------------tgtg--------tgtgtgtgtgtATTTTAAGTTTCT------------------------TTTGTTGTCAGAG----GACTTAGAATTTTATT--------TTATATGGTAATTC---TGACAATTTACTTTATTCTCCACCCCACATTTAT-TGAACAAC-AAAGTATGAAAGTAATGTGTCCCATAACCAGCCTTCAGAAGAATT-ACAGCTGCTGTA
i chlSab2.chr29             C 0 I 631
s colAng1.NW_012116021v1       296872 200 +   4111199 GTAAAATGATTAGCAGGGAAAAACgt-------------------------------------------------------------------gcgtgtgtg--------------------------------------tgtg--------tgtgtgtctgtATTTTAAGTTGAT------------------------TTTGTTGTTAGAG----CACTTAGAA-----TT--------TTATATGGAAATTC---TGTCAGTTTACTTGATTCTCCACCCCACATTTAT-TGAAGAGC-AAAGTTTGAAAGTAATGTGTCCCATAACCAGCCTTCAGAAGAATC-ACAACTGCTTTA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 185310 192 -   2853901 ATAAAATGATAAGCAGGGAAC-----------------------------------------------------------------------------------------------------------------------------------CGTGCGTGCACATTTTAAGTATCT------------------------TTTGTTGTCAGAG----CAGTTAGAATTTTATTAAG--GCATTATGTGCTAATTC---TGTCAATTTACTTCATTTTCCACC-CACATTTAT-TGAACGGC-AAAGTGTGAAAGTAATGTGTCCCATAACTGGCCTTCAGGAGAATT-ATAACTGCTGTA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             485004 193 -   3282555 ATAAAGTGATTAACAGGGAAC-----------------------------------------------------------------------------------------------------------------------------------CCTGTGTGCACATTTTAAGTATCC------------------------TTTGTTGCTAGAG----CAGTTAGAATTTTTTTAAG--GCATTATATGCTAATTC---TGTCAATTTACTTCATTCTTCACC-CACATTTAT-TGAACAGCAAAAGTATGAAAGTAATGTGTCCCATAACTGGCCTTCAGGAAAATT-ATAACTGCTGTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271293 192 -   1024465 ATAAAATGATTAGCAGGGAAC-----------------------------------------------------------------------------------------------------------------------------------CGTGTGTGCACATTTTAAGTATCT------------------------TTTGTTGTCAGAG----CAGTTAGAATTTTATTAAG--GCATTATATGCTAATTC---TGTCAATTTACTTCATTCTTCACC-CACATTTAT-TGAACAGC-AAAGTATGAAAGTAACGTGTCCCATAACTGGCCTTCAGGAGAATT-ATAACTGCTGTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       716218 194 -   3745603 ATAAAATGATTAGCAGGGAACA-------------------------------------------------------------------------------------------------------------------------G--------TGTGTGTGCACATTTTAAGTATCT------------------------TTTGTTGTCAGAG----CAGTTAGAATTTTATTAAG--GCATTATATGCTAATTC---TGTCAATTTACTTCATTCTCCACC-CACATTTAT-TGAACAGC-AAAGTATGAAAGTAATGTGTCCCATAACTGGCCTTCAGGAGAATT-ATAACTGCTGTA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 903489 221 - 119751181 GTAAAATGATTAGCAGGGAACAATAT------------------------------------------------------ATATT-----TATTTAtgtgtg--------------------------------------tgtg--------tgtgtgtgtgtgtATTGAATATCT------------------------TATGTTGTCAGAG----CACTTAGAATTTTATTAAGGTGTACTATATGGTAATTT---TGTTAGCTTACTTCATTCTCCACCCCACATTTAT-TGAACAGC-AAAGTGTGAACGTAATGTATCCTATAACTGGTCTCCAGAAGGATT-GCAGCTGGTGTA
i micMur3.chr3              I 42 C 0
s proCoq1.NW_012149419v1       627125 215 -   2566024 GTAAAATGATTAGCAGGGAACAatat------------------------------------------------------a---------tatttatatgtg--------------------------------------tgtg--------tatatatatatatatttagtatCT------------------------TATGTTGTCAGAG----CACTTAGAATTTTATTAAG--GTACTATATGGTAATTT---TGTTTCTTTACTTTGTTCTCCACCCCACATTTAT-TGAACAGC-AAAGTGTGAAAGTAATGTGTCCTATAACTGGTCTCCAGAAGGATT-ATAACTGCTGTG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6742205 204 -  36342412 GTAAAATGATTAGCAAGGAATAGTAT------------------------------------------------------A---------TAGTTC----------------------------------------------TG--------TATATATATTTTTAGTGATT-TTT------------------------AATATGGTCAGAG----CACTTAGAATTTTATTAAG--GTAGTATATAGTAATTT---TGCCAGTTTACTTCATTCTTCATCTC-CATTTAT-TGAACAGC-AAAGTGTGAAAGTATTG--TTCTATAATTGGTCTCCAGAAGAATTAACAACTGCTGTG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 30024 337 -  40214260 GCAAAATGATTAGCAGGGAGCAATTTCTTTCTTTGGGTAGCCTTTTTTTCCCGGATGTCAGCATTTAGGGGCACCTGGGTGgctcagcagggtgtctgcttgaagattccctccctctgcttccccccccccccaactcatgca--------tgggcccgtgcatgtccactgtctctaaaaataaataaatcttaaaaaTTAAATGTCAGAGACTTTTTTTAGACTCTTATTAGG--GCACTGAACGGTAATTC---TGTCAGT----ATCATTCTTAACCCCAAATTTCT-GGAAC----ACAGTGTGAAAGTAATGTGTCCTATAACTGGTCTCTGAAAGAATT-AGAACTGTTATG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               7973 186 -   2180720 GTAAAATGATTAGCTGGGAGCAATTT----------------------------------------------------------------TTTTTTTGTATC--------------------------------------T-----------TGTGT-------------------------------------------TATGTTGTCAGAG----CACTTATAATTTTATTAAGTG---TTGTCTGGTAATTCTTATTTCAGTTTA----ATTCTC-----CACATTTATCTAAACATC-GAAGTGTGAAAGTAATGTGGTTTACAGCTGGTCTTCAGGAGACTC-ACAACTTCTATA
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55156404   1 + 124595110 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=8460.000000
s hg38.chr15_KI270850v1_alt    171801 1 +    430880 T
s panTro5.chr15              17976889 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17203133 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       270427 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101796733 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60337292 1 + 169600520 T
i rheMac8.chr7              C 0 I 328
s macFas5.chr7               65241255 1 + 171882078 C
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1793033 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 I 315
s colAng1.NW_012116021v1       297072 1 +   4111199 T
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 185502 1 -   2853901 T
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             485197 1 -   3282555 T
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271485 1 -   1024465 T
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       716412 1 -   3745603 T
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 903710 1 - 119751181 T
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       627340 1 -   2566024 T
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6742409 1 -  36342412 T
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 30361 1 -  40214260 C
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               8159 1 -   2180720 C
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55156404 1 + 124595110 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3816544 631 +  24206276 I

a score=10556.000000
s hg38.chr15_KI270850v1_alt    171802 2 +    430880 CT
s panTro5.chr15              17976890 2 -  83230942 AT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17203134 2 -  99763055 AT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       270428 2 +    378907 CT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101796734 2 + 121039945 CT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65241256 2 + 171882078 AT
i macFas5.chr7              C 0 I 298
s colAng1.NW_012116021v1       297073 2 +   4111199 CT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 185503 2 -   2853901 CT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             485198 2 -   3282555 CT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271486 2 -   1024465 CT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       716413 2 -   3745603 CT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 903711 2 - 119751181 TT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       627341 2 -   2566024 TT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6742410 2 -  36342412 CT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 30362 1 -  40214260 -T
i canFam3.chr30             C 0 I 1
s dasNov3.JH569975               8160 2 -   2180720 CT
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55156404 1 + 124595110 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3816544 631 +  24206276 I
e cerAty1.NW_012002657v1      1793034 315 -   1987038 I
e rheMac8.chr7               60337293 328 + 169600520 I

a score=62232.000000
s hg38.chr15_KI270850v1_alt    171804 5 +    430880 CTGAA
s panTro5.chr15              17976892 5 -  83230942 CTGAA
i panTro5.chr15             C 0 I 352
s panPan2.chr15              17203136 5 -  99763055 CTGAA
i panPan2.chr15             C 0 I 352
s gorGor5.CYUI01015946v1       270430 5 +    378907 CTGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101796736 5 + 121039945 CTGAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65241556 5 + 171882078 cTGAA
i macFas5.chr7              I 298 C 0
s cerAty1.NW_012002657v1      1793349 5 -   1987038 cTGAA
i cerAty1.NW_012002657v1    I 315 C 0
s colAng1.NW_012116021v1       297075 5 +   4111199 CTGAA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 185505 5 -   2853901 CTGAA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             485200 5 -   3282555 CTGAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271488 5 -   1024465 CTGAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       716415 5 -   3745603 CTGAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 903713 5 - 119751181 CTGAA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       627343 5 -   2566024 CTGAA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6742412 5 -  36342412 CTGAA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 30364 5 -  40214260 CTGAA
i canFam3.chr30             I 1 C 0
s dasNov3.JH569975               8162 5 -   2180720 TTGAA
i dasNov3.JH569975          C 0 I 454
e mm10.chr9                  55156404 1 + 124595110 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3816544 631 +  24206276 I
e rheMac8.chr7               60337293 328 + 169600520 I

a score=30254.000000
s hg38.chr15_KI270850v1_alt    171809 5 +    430880 CTTTC
s gorGor5.CYUI01015946v1       270435 5 +    378907 CTTTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101796741 5 + 121039945 CTTTC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65241561 5 + 171882078 CTTTC
i macFas5.chr7              C 0 I 3
s cerAty1.NW_012002657v1      1793354 5 -   1987038 CTTTC
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012116021v1       297080 5 +   4111199 CTTTC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 185510 5 -   2853901 CCATC
i calJac3.chrY              C 0 I 3
s saiBol1.JH378276             485205 5 -   3282555 CCATC
i saiBol1.JH378276          C 0 I 3
s cebCap1.NW_016107979v1       271493 5 -   1024465 CCATT
i cebCap1.NW_016107979v1    C 0 I 3
s aotNan1.NW_018511953v1       716420 5 -   3745603 CCATC
i aotNan1.NW_018511953v1    C 0 I 3
s micMur3.chr3                 903718 5 - 119751181 CCTTC
i micMur3.chr3              C 0 I 3
s proCoq1.NW_012149419v1       627348 5 -   2566024 CCTTC
i proCoq1.NW_012149419v1    C 0 I 3
s otoGar3.GL873530            6742417 5 -  36342412 CCTTC
i otoGar3.GL873530          C 0 I 3
s canFam3.chr30                 30369 5 -  40214260 CCTTC
i canFam3.chr30             C 0 I 3
s dasNov3.JH569975               8621 5 -   2180720 ctttt
i dasNov3.JH569975          I 454 C 0
e mm10.chr9                  55156404 1 + 124595110 I
e panPan2.chr15              17203141 352 -  99763055 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3816544 631 +  24206276 I
e rheMac8.chr7               60337293 328 + 169600520 I
e panTro5.chr15              17976897 352 -  83230942 I

a score=260430.000000
s hg38.chr15_KI270850v1_alt    171814 43 +    430880 AAGAAG---TTTGTGCATCAATT-----TTCAAAAAATTATGAAATCC--CTG
s gorGor5.CYUI01015946v1       270440 46 +    378907 AAGAAGAAGTTTGTGCATCAATT-----TTCAAAAAATTATGAAATCC--CTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101796746 46 + 121039945 AAGAAGAAGTTTGTGCATCAATT-----TTCAAAAAATTATGAAATCT--CTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60337621 41 + 169600520 AAGAAG---TTTGTGCATCAATT-----TTCAAAAAATTATGATATCA--A--
i rheMac8.chr7              I 328 C 0
s macFas5.chr7               65241569 41 + 171882078 AAGAAG---TTTGTGCTTCAGTT-----TTCAAAACATTATGATATCA--A--
i macFas5.chr7              I 3 C 0
s cerAty1.NW_012002657v1      1793359 41 -   1987038 AAGAAG---TTTGTGCATCAATT-----TTCAAAAAATTATGATATCA--A--
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3817175 41 +  24206276 AAGAAG---TTTGTGCTTCAGTT-----TTCAAAACATTATGATATCA--A--
i chlSab2.chr29             I 631 C 0
s colAng1.NW_012116021v1       297085 42 +   4111199 AAGAAG---TTTGTGCATCAATT-----TTCAAATAA-TACGAAATCCCTG--
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 185518 43 -   2853901 AAGAAG---TTGGTGCATCAATT-----TAAAAAAAATCACAAAATCC--CTG
i calJac3.chrY              I 3 C 0
s saiBol1.JH378276             485213 48 -   3282555 AAGAAG---TTTGTGCATCAATTAAAAAAAAAAAAAATCACAAAATCC--CTG
i saiBol1.JH378276          I 3 C 0
s cebCap1.NW_016107979v1       271501 42 -   1024465 AAGAAG---TTTGTGCATCAATT------TAAAAAAATCACGAAATCC--CTG
i cebCap1.NW_016107979v1    I 3 C 0
s aotNan1.NW_018511953v1       716428 43 -   3745603 AAGAAG---TATGTGCATCAATT-----TAAAAAAAATCACAAAATCC--CTG
i aotNan1.NW_018511953v1    I 3 C 0
s micMur3.chr3                 903726 43 - 119751181 AAGAAA---TATGTGCATCAATT-----TTCAAAAAAGTATGAAATAC--CTG
i micMur3.chr3              I 3 C 0
s proCoq1.NW_012149419v1       627356 43 -   2566024 AAGAAG---TATGTACATCAGTT-----TTCAAAAAAGTATGAAATCC--CTG
i proCoq1.NW_012149419v1    I 3 C 0
s otoGar3.GL873530            6742425 40 -  36342412 AAGAAG---TATGTGCAAAAATT-----TCC---AAATTATGAAATCC--CTG
i otoGar3.GL873530          I 3 C 0
s canFam3.chr30                 30377 43 -  40214260 AAAAGT---TGTATGTGTCCATC-----TTCAGAGAGTGATGAAGTCC--TTG
i canFam3.chr30             I 3 C 0
s dasNov3.JH569975               8626 43 -   2180720 aaaaaG---TATGTTTATCAATT-----ACCAAAAAGTTATGAAATCC--TTA
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55156404  1 + 124595110 I
e panPan2.chr15              17203141 352 -  99763055 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e panTro5.chr15              17976897 352 -  83230942 I

a score=1047347.000000
s hg38.chr15_KI270850v1_alt    171857 106 +    430880 AAGATAGCTGTGTTCTAC-ATTTGGAAAGATA-CAAAAACTGAA----------CCTTCTAGCAGGCAGTTTTGCTTGCTGGTGCTTGAG--ATAGAGCCACACACTGG--TCTC---AGTGGAT
s panTro5.chr15              17977249 106 -  83230942 AAGATAGCTGTGCCCTAC-ATTTGGAAAGATA-CAAAAACTGAA----------CATACCGGCAGGCAGTTTTGCTTGCTGGTGCTTGAG--ATAGAGCCACACATTGG--TCTC---AGTGGAT
i panTro5.chr15             I 352 C 0
s panPan2.chr15              17203493 106 -  99763055 AAGATAGCTGTGCCCTAC-ATTTGGAAAGATA-CAAAAACTGAA----------CATACCGGCAGGCAGTTTTGCTTGCTGGTGCTTGAG--ATAGAGCCACACATTGG--TCTC---AGTGGAT
i panPan2.chr15             I 352 C 0
s gorGor5.CYUI01015946v1       270486 106 +    378907 AAGATAGCTGTGTTCTAC-ATTTGGAAAGATA-CAAAAACTGAA----------CCTTCTAGCAGGCAGTTTTGCTTGCTGGTGCTTGAG--ATAGAGCCACACACTGG--TCTC---AGTGGAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              101796792 106 + 121039945 AAGATGGCTGTGTTCTAC-ATTTGGAAAGATA-CAAAAACTGAA----------CCTTCTAGCAGGCAGTTTTGCTTGCTGGTGCTTGAG--AAAGAGCCACACACTGG--TCTC---AGTGGAT
i nomLeu3.chr6              C 0 N 0
s rheMac8.chr7               60337662  78 + 169600520 AAGATAGCTGTGTCTTAC-ATTTGGAAAGATA-CAAAAACTGAA----------CATACTGGCAGGCAGTATT------------------------------TCTTGG--TCTC---AGTGGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65241610 106 + 171882078 AAGATAGCTGTGCCGCAC-ATTTGGAAAGATA-CAGAAACTGAA----------CATACTGGCAGGCAGTTTTGCCTACTGGTGCTTGAG--ATAGAGCCACACCTTGG--TCTC---AGTGGAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1793400  78 -   1987038 AAGATAGCTGTGTCTTAC-ATTTGGAAAGATA-CAAAAACTGAA----------CATACTGGCAGGCAGTATT------------------------------GCTTGG--TCTC---AGTGGAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3817216 106 +  24206276 AAGATAGCTGTGCTGCAC-ATTTGAAAAGATA-CAGAAACTGAG----------CATACTGGCAGGCAGTTTTGCCTACTGGTGCTTGAG--ATAGAGCCACACGTTGG--TCTC---CGTGGAT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1       297127 106 +   4111199 AAGATAGCTATGTCCTAC-ATTTGGAAAGATA-CAAAAACTGAA----------CATTCTAGCAAGCAGTTTTGCTTGCTGATGCTTGAG--ATAGAGCCACACATTGA--TCTC---AGTGGAT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                 185561 116 -   2853901 AAGATAGCTGTGTCCTAC-ATTTGGGAAGATA-CAAAAACTGACAAAAAAAAAAAAATCTGGCAGGCAGTTTTGCTTGCTGGTGCTTGAG--ATAGAGCCACACAATGG--TCTC---AGTGGAT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             485261 106 -   3282555 AAGATAGCTGTGTCCTAC-ATTTGGAAAGATA-CAAAAACTGAC----------CATTCTGGCAGGCAGTTTTGCTTGCTGGTGCTTGAG--ATAGAGCCACATAATGG--TCTC---AGTGGAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271543 106 -   1024465 AAGATGGCTGTGTCCTAC-ATTTGGGAAGATA-CAAAAACTGAC----------CATTCTGGCAGGCAGTTTTGCTTGCTGGTGCTTCAG--ATAGAGCCACACAATGG--TCTC---AGTGGAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       716471 106 -   3745603 AAGATAGCTGTGTCCTAC-ATTTGGGAAGATA-CAAAAACTGAC----------CATTCTGGCAGGAAGTTTTGCTTGCTGGTGCTTGAG--ACAGAGCCACACAATGG--TCTC---AGTGGAT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 903769 110 - 119751181 GAGATAGCTGTGTCCTACGATTTGGAAAGATAGCAACATCTGAG----------CATTCTGGCAGGCAGTTTTGCTGGCTGGTGCTTGAG--ATAGAGCCACATATGGGTCTCTC---AGTGGAT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       627399 106 -   2566024 GAGA----TGTGTCCTACCATTTGGAAAGATAGCAAAAACTGAG----------CATTCTGGCAGGCAGTTTTGCCGGCTGGTGCTTGAGCTAGAGAGCCACACATGGG--TCTT---AGTGGAT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6742465 107 -  36342412 GAGATAGCTGTGTCCTACCATTTGGAAAGACAGTAAAA-CTGAG----------CATTCTGTCAAGCAGTTTTGCTGGCTGATGCTTGAG----AGAGCCACACATTGGTCTCTT---AGTGGAT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 30420 105 -  40214260 CAGATGACCACGTTCTATTATTTGGAAAGATAGTAGAAACAGAC----------CATTCTGGCAG--AGTTTTGCTGG-TGGTCCTTGAT--ATGGAGCCACACATTGG--GGTT---AGTGGAC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975               8669 110 -   2180720 GTGATGGCTATGGTCTGTCATTTGGAAAGATGCCAGAATCCGAG----------CATTCTGGCAGGCAAT-TTGTTAACTGATGCTTGAG--ATAGTCATATGTCTTGC--TTTCTTTAATGGAT
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55156404   1 + 124595110 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=378339.000000
s hg38.chr15_KI270850v1_alt   171963 56 +    430880 TTGTGGAGAAAAGTAGGTACAGAAAGTTATTTCTAAATAAGACCA-------AAAAATCCTTT
s panTro5.chr15             17977355 56 -  83230942 TTATGGAGAAAAATAGATAGAGAATATTGTTTCTAATTAAGACCA-------AAAAATCCTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             17203599 56 -  99763055 TTATGGAGAAAAATAGATAGAGAATATTGTTTCTAATTAAGACCA-------AAAAATCCTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      270592 55 +    378907 TTGTGGAGAAAAGTAGGTACAAAAAGTTATTTCTAAATAAGACC--------AAAAATCCTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              60337740 56 + 169600520 TTATGGAGATAAATAGATACAGAAAGTTATTTCTAAATAAGACCA-------AAATATCCTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              65241716 56 + 171882078 TTGTGGAGAAAAATAGATACAGAAAGTTATTTCTAAATAAGACCA-------AAAAATTCTTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1     1793478 56 -   1987038 TTATGGAGATAAATAGATACAGAAAGTTATTTCTAAATAAGACCA-------AAATATCCTTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              3817322 56 +  24206276 TTGTGGAGAAAAATAGATACAGAAAGTTATTTCTAAATAAGACCA-------AAAAATCCTTT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      297233 56 +   4111199 TTATGGAGAAAAATAGATACAGAAAGTTACTTCTAAATAAGACCG-------AAAAATCCTTT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                185677 50 -   2853901 TTATGGAGAAAAATAGATATAGAAAGTTATTTCTAAATAAG---------ACAAAAATC----
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276            485367 59 -   3282555 TTATGGAGAAAAATAGATACAGAAAGTTATTTCTAAATAAGACAACAACAACAAAAATC----
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1      271649 59 -   1024465 TTATGGAGAAAAATAGATACAGAAAGTTATTTCTAAATGAGACAACAACAACAAAAATC----
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      716577 58 -   3745603 TTATGGAGAAAAATAGATACAGAAAGTTATTTCTAAATAAGACAACAACAA-AAAAATC----
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                903879 48 - 119751181 TTATGTAGAAAAAT--------AAAGTTATTTTTAAACAAGATGA-------AAAATTCCCTT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1      627505 48 -   2566024 TTATGCAGAAAAAT--------AAAGTTCTTTTTAAACAAGATGA-------AAAATTCCCTT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530           6742572 28 -  36342412 TTATGTAGAAAAAT--------ATAG---------------------------AAATTTATTT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                30525 55 -  40214260 TCATGTAGA-AAATAGACACAGAAAGTTATTTCTGAATAAGACTG-------ATGGtttctct
i canFam3.chr30             C 0 I 18
s dasNov3.JH569975              8779 51 -   2180720 TTATATAGAAAAATAG----AGAAAGCTATTTTTGTACAAGATA--------AAAACTGCTTT
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                 55156404  1 + 124595110 I
e manLeu1.NW_012105520v1     1083774 8981 +   1458659 I

a score=308263.000000
s hg38.chr15_KI270850v1_alt   172019 33 +    430880 TCTTAAGCAGTGACAGGTAAAGAGGTTGTCTTG
s panTro5.chr15             17977411 33 -  83230942 TCTTAAGCAGCGACAGGTAAAGAGGTTGTCTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15             17203655 33 -  99763055 TCTTAAGCAGCGACAGGTAAAGAGGTTGTCTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      270647 33 +    378907 TCTTAAGCAGTGACAGGTAAAGAGGTTGTCTTG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              60337796 33 + 169600520 TCTTAAGCAGTGGCAGGTAAAGAAATTCTCTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              65241772 33 + 171882078 TCTTAAGCAGTGACAGGTAAAGAGGTTGTCTTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1     1793534 33 -   1987038 TCTTAAGCAGTGACAGGTAAAGAGATTCTCTTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              3817378 33 +  24206276 TCTTAAACAGTGACAGGTAAAGAGGTTGTCTTG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      297289 33 +   4111199 TCTTAAGCAGTGACAGGTAAAGAGGTTGCCTTG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chrY                185727 32 -   2853901 -CTTAATCAGCGACAGATAAAGAGGTTGGCTTG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276            485426 32 -   3282555 -CTTAAGCAGTGACAGATAAAGAGGTTGGCTTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1      271708 32 -   1024465 -CTTAAGCAGTGACAGGTAAAGAGGTTGGCTTG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      716635 32 -   3745603 -CTTAAGCAGTGACAGGTAAAGAGGTTGGCTTG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                903927 32 - 119751181 TTTAAAGCA-CGAGAGGTAACGAGGTTGGCTTG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1      627553 33 -   2566024 TTTAAAGCAGCAATAGGTAAAAAGGTTGGCTTC
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530           6742600 31 -  36342412 TT--AAGCAGTCACAGGCAAAGAAGTTGGCTTG
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              8830 33 -   2180720 TCTTAAGCAATGACAGGCAAAGAGGTTGGTTTG
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                 55156404  1 + 124595110 I
e canFam3.chr30                30580 18 -  40214260 I
e manLeu1.NW_012105520v1     1083774 8981 +   1458659 I

a score=831550.000000
s hg38.chr15_KI270850v1_alt   172052 109 +    430880 GCTAACCTTGAATTGTGTTGCCCTTGATAGAGACAGTTTTATGATGGGGATGGTAGTGATGAT---AAACTTGTTGGAAATTTGTCCACTTATGGTAACCTTTGTGGTAGCT
s panTro5.chr15             17977444 109 -  83230942 GCTAACCTTGAATTGTATTGCCCTTGATTGAGACAGTTTTATGGTGGGGTTGGTAGTGGTGAT---AAACTTGTTTGAAATTTGTCTGCTTATAGTAAGCTTTGTGGTAGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             17203688 109 -  99763055 GCTAACCTTGAATTGTATTGCCCTTGATTGAGACAGTTTTATGGTGGGGTTGGTAGTGGTGAT---AAACTTGTTTGAAATTTGTCTGCTTATAGTAAGCTTTGTGGTAGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      270680 109 +    378907 GCTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGTGGGGATGGTAGTGGTGAT---AAACTTGTTTGAAATTTGTCCACCTATAGTAACCTTTGTGGTAGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              60337829 107 + 169600520 GTTAACCTTGAATTGTGTTGCCCTTGACGGAG--AGTTTTATGGTGGGGATGGTAGTGGTGAT---AAACTTGTTTGAAATTTGTCCACTTATAGTAACCTTTGTGGTAGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              65241805 108 + 171882078 GCTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTGTATGGTGGGGATGGTAGTGGTGAT----AACCTGTTTGAAATTTGTCTGCTTATAGTAACCTTTGTGGTAACT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1     1793567 107 -   1987038 GTTAACCTTGAATTGTGTTGCCCTTGACTGAG--AGTTTTATGGTGGGGATGGTAGTGGTGAT---AAACTTGTTTGAAATTTGTCCACTTATAGTAACCTTTGTGGTAGCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              3817411 109 +  24206276 GCTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGTGTGGATGGTAGCGGTGAC---AAACTTGTTTGAAATTTGTCTGCTTATAGTAACCTTTGTGGTAACT
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                185759 109 -   2853901 GTTAGCCTTGTGTCATGTTCCCCTTGATTAAGACAGTTTTATGGTGGGGATGGTAGCAGTGGT---GAACTTGCTTGAAATTTGTCCACTTACAGTAATCCTTATGGTAGCT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276            485458 106 -   3282555 GTTAGCCTTGAGTCGTGTTCTC---GATTAAGACGGTTTTATGGTGGGGATGGTAGCAGTGAT---GAACTTGCTTGAAATTTGTCCACTTACAGTAATCTTTATGGTAGCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1      271740 109 -   1024465 GTTAGCCTTGAGTCGTGTTCTCCTCGATTAAGACAGTTTTATGGTGGGGATGGTAGCAGTGAT---GAACTTGCTTGAAGTTTGTCCACTTACAGTAATCTTTATGGTAGCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      716667 109 -   3745603 GTTAGCCTTGAGTCGTATTCCCCTCGATTAAGACAGTTTTATGGTGGGGATGGTAGCAGTGAT---GAACTTGCTTGAAATTTGTCCACTTACAATAATCTTTATGGTAGCT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                903959 106 - 119751181 ATTAACCTTGAGTTGCGTTGCCCCATATTAGGACAGTTTTATGGTGGATATGGTAGTGGTGGT---GAACTTGTTTTCAGTTTGTCCACTTGTGGTAATCTTT---GTGGTG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1      627586 109 -   2566024 ATTAACCCTGAGTTGTGTTGCCCCATGTTAGGACAGTTTTATGGTGGGGATGGTAGTGATGGT---GAACCTGTTTGCAGTTTGTCTACTTACAGTGACCTTTGCGGTGGCG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530           6742631  99 -  36342412 ATGAACTTTGAGCTGTGTTGCCCCATGTTAGGACAAGTTTATGGTGGG---------GATGGT---GAACTTGTTTGAAG-TTGTCTGTTTACAGTAACCTTTATGTTGGCT
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              8863 112 -   2180720 ATTAACCTTGAATTGTGTTGCCCCAGATTGGGAAAGTCTTACGGTGGTAATGGTGGTGGTGATCGTGAACTTGTTTGAAATGTATCTACTTACCCTAGTCTTTATTGTGGTA
i dasNov3.JH569975          C 0 I 2942
e mm10.chr9                 55156404   1 + 124595110 I
e canFam3.chr30                30580  18 -  40214260 I
e colAng1.NW_012116021v1      297322   0 +   4111199 C
e manLeu1.NW_012105520v1     1083774 8981 +   1458659 I

a score=164541.000000
s hg38.chr15_KI270850v1_alt   172161 17 +    430880 GTCACAGACAACTTCAT
s panTro5.chr15             17977553 17 -  83230942 GTCACAGACAGCTTCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15             17203797 17 -  99763055 GTCACAGACAGCTTCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1      270789 17 +    378907 GTCACAGACAACTTCAT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              60337936 17 + 169600520 GTCACAGACAACTTCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              65241913 17 + 171882078 GTCACAGACAACTTCAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1     1793674 17 -   1987038 GTCACAGACAACTTCAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              3817520 17 +  24206276 GTCACAGACAACTTCAT
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                185868 17 -   2853901 GTCGCAGACAACTTCAT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276            485564 17 -   3282555 GTCACAGACAACTTCAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1      271849 17 -   1024465 GTCACAGACAACTTCAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      716776 17 -   3745603 GTCACAGACAACTTCAT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                904065 17 - 119751181 GTCACAGATGACAGCAT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1      627695 17 -   2566024 GTCACAGACAACATCAT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530           6742730 17 -  36342412 GTCATGGACAACTTCAT
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975             11917 17 -   2180720 GTCAAAGATAATTTCAT
i dasNov3.JH569975          I 2942 C 0
e mm10.chr9                 55156404  1 + 124595110 I
e canFam3.chr30                30580 18 -  40214260 I
e colAng1.NW_012116021v1      297322  0 +   4111199 C
e manLeu1.NW_012105520v1     1083774 8981 +   1458659 I

a score=840126.000000
s hg38.chr15_KI270850v1_alt    172178 85 +    430880 CCTCACAGGCCCTAAAATTACTATAAAACTAATAG---AATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTGGATAATTGTT
s panTro5.chr15              17977570 85 -  83230942 CCTCACAGGCCCTAAAATTACTATAAAACTAATAG---AATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17203814 85 -  99763055 CCTCACAGGCCCTAAAATTACTATAAAACTAATAG---AATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       270806 85 +    378907 CCTCACAGGCCCTAAAATTACTATAAAACTAATAG---AATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTGGATAATTGTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125163 85 + 121039945 CCTCACAGGCCCTAAAATTACTATAAAACTAATAG---AATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTT
i nomLeu3.chr6              N 0 C 0
s rheMac8.chr7               60337953 85 + 169600520 CCTCACAGACCTTGAAATTACTATAAAACTAACAG---AACAGAGGAGAAACAAAGGACCTGAATAATTGGATGCTTAGAAAATTGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65241930 85 + 171882078 CCTCACAGGCCTTAAAATTACTATAAAACTAATAG---AATGGAGGAGAAACAAAGTACCTGAATAATTAGATGTGTAGGTAATTGTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1793691 85 -   1987038 CCTCACAGACCTTGAAATTACTATAAAACTAACAG---AACAGAGGAGAAACAAAGGACCTGAATAATTGGATGCTTAGAAAATTGTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3817537 85 +  24206276 CCTCACAGGCCTTAAAATTACTATAAAACTAATAG---AATGGAGGAGAAACAAAGGACCTGAATAATTAGATGTGTAGATAATTGTT
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 185885 85 -   2853901 CCTCCCAGGACTTATAATTACTATAAAACTAATAG---AATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             485581 85 -   3282555 CCTCACAGGACTTACAATTACTATAAAACTAATAG---AATGGAGGAGGAACAAAGGACCCGAATAATTAGACGCTTAGATAATTGTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271866 79 -   1024465 CCTCACAGGAC------TTACTATAAAACTAATAG---AATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       716793 85 -   3745603 CCTCACAGTACTTACAATTACTATAAAACTAATAG---AATGGAGAAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 904082 87 - 119751181 -CCTGTAAGCCTTAAAATCAGTGTAAAACTAATAGTAAAATGGAGTAGAAACAAAGGACCTACATAGTTAGATGCATAGGTAATTGTT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       627712 87 -   2566024 -CTTGTAGGCCTTACAATCACTGTAAAACTAATAGTAGAATGGAGTAGGAACAAAGGACCTACATAGTTAGATGCTTAGATAATTGTT
i proCoq1.NW_012149419v1    C 0 I 73
s otoGar3.GL873530            6742747 87 -  36342412 -CCTGCAAGCCTTAAAATCATTGCTAAACTAATAGAAGAATGGAGTAGAAACAAAGGACCTAAATAATTAGATGCTTGGACAATTTTT
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              11934 84 -   2180720 -CCTACAAGCCTGAAAATGACTATGAAGCAGATAG---AATGGAAGAGAAACAAAGGTCCTGAATAATTAGATACTTAGATAATCGTT
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55156404  1 + 124595110 I
e canFam3.chr30                 30580 18 -  40214260 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=21453.000000
s hg38.chr15_KI270850v1_alt    172263  5 +    430880 CTGT-------------------G
s panTro5.chr15              17977655  5 -  83230942 CTGT-------------------G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17203899  5 -  99763055 CTGT-------------------G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       270891  5 +    378907 CTGT-------------------G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125248  5 + 121039945 CTGT-------------------G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338038  5 + 169600520 CTGT-------------------G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242015  5 + 171882078 CTGT-------------------G
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1793776  5 -   1987038 CTGT-------------------G
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3817622  5 +  24206276 CTGT-------------------G
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 185970  5 -   2853901 CTGT-------------------G
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             485666  5 -   3282555 CTGT-------------------G
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271945  5 -   1024465 CTGT-------------------G
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       716878  5 -   3745603 CTGT-------------------G
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 904169 24 - 119751181 TTATATTTACTTAAGTCTTTAAAA
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6742834 24 -  36342412 TTGTATGTACTTAAGTCTTTAAAA
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              12018  5 -   2180720 CTGT-------------------A
i dasNov3.JH569975          C 0 I 378
e proCoq1.NW_012149419v1       627799 73 -   2566024 I
e mm10.chr9                  55156404  1 + 124595110 I
e canFam3.chr30                 30580 18 -  40214260 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=275936.000000
s hg38.chr15_KI270850v1_alt    172268 41 +    430880 ---TTTTCATAA-CAA------GTGAAAAAGAGCAGTGTTAGAAGTACTTA
s panTro5.chr15              17977660 41 -  83230942 ---TTTTCATAA-CCG------GTGAAAAAGAGCAGTGTTAGAAGTACTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17203904 41 -  99763055 ---TTTTCATAA-CCG------GTGAAAAAGAGCAGTGTTAGAAGTACTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       270896 41 +    378907 ---TTTTCATAA-CAA------GTGAAAAAGAGCAGTGTTAGAAGTACTTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125253 41 + 121039945 ---TTTTCATAA-CCG------GTGAAAAAGTGCAGTGTTAGAAGTACTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338043 41 + 169600520 ---TTTTCATAA-CAG------GTGAAAAAGAACAGTGTTAGAAGCACTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242020 41 + 171882078 ---TTTTCATAA-CCG------GTGAAAAAGAACAGTGTTAGAAACCCTTA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1793781 41 -   1987038 ---TTTTCATAA-CAG------GTGAAAAAGAACAGTGTTAGAAGCACTTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3817627 41 +  24206276 ---TTTTCATAA-CCG------GTGAAAAAGAACAGTGTTAGAAACCCTTA
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 185975 40 -   2853901 ---TTTTTAT-A-CTG------TGGTGAAAGAGCAGTGCTATGAGCACTTA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             485671 41 -   3282555 ---TTTTCCTAA-CTG------TGGTGAAAGAGCAGTGCTAGAAGCACGTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271950 41 -   1024465 ---TTTTCATAA-CTG------TGGTGAAAGAGCAGTGCTAGAAGCACTTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       716883 41 -   3745603 ---TTTTCATAA-CTG------TGGTGAAAGAGCAGTGCTAGAAGCACTTA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 904193 41 - 119751181 ---TTTTCACAA-CTG------GTGAAAAAGAGCTGTGTTAGAAGCAAATA
i micMur3.chr3              C 0 I 9
s otoGar3.GL873530            6742858 43 -  36342412 ---TTTTCAAAA-CTGTGGTTTTTAAAAAAGAGCTGTGTTAGAAGCA----
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              12401 39 -   2180720 TTTTTTTTATAAGTTG------CTAAAAAAGGGCACTGTAAGAAG------
i dasNov3.JH569975          I 378 C 0
e proCoq1.NW_012149419v1       627799 73 -   2566024 I
e mm10.chr9                  55156404  1 + 124595110 I
e canFam3.chr30                 30580 18 -  40214260 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=65544.000000
s hg38.chr15_KI270850v1_alt    172309 11 +    430880 AACATTCCATG
s panTro5.chr15              17977701 11 -  83230942 AACATTCCATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17203945 11 -  99763055 AACATTCCATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       270937 11 +    378907 AACATTCCATG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125294 11 + 121039945 AACATTCCATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338084 11 + 169600520 AATATTCTATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242061 11 + 171882078 AACATTCCATG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1793822 11 -   1987038 AATATTCTATG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3817668 11 +  24206276 AACATTCCATG
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186015 11 -   2853901 AACATTGTATG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             485712 11 -   3282555 AACATTGTATG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       271991 11 -   1024465 AACATTGTATG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       716924 11 -   3745603 AACATTGTATG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6742901 10 -  36342412 AACATCCTGT-
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 904234  9 - 119751181 I
e proCoq1.NW_012149419v1       627799 73 -   2566024 I
e mm10.chr9                  55156404  1 + 124595110 I
e dasNov3.JH569975              12440  0 -   2180720 C
e canFam3.chr30                 30580 18 -  40214260 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=9555.000000
s hg38.chr15_KI270850v1_alt    172320 1 +    430880 T
s panTro5.chr15              17977712 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17203956 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       270948 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125305 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338095 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242072 1 + 171882078 T
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1793833 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3817679 1 +  24206276 T
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186026 1 -   2853901 T
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             485723 1 -   3282555 T
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       272002 1 -   1024465 T
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       716935 1 -   3745603 T
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       627872 1 -   2566024 T
i proCoq1.NW_012149419v1    I 73 C 0
s otoGar3.GL873530            6742911 1 -  36342412 T
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 904234 9 - 119751181 I
e mm10.chr9                  55156404 1 + 124595110 I
e dasNov3.JH569975              12440 0 -   2180720 C
e canFam3.chr30                 30580 18 -  40214260 I
e colAng1.NW_012116021v1       297322 0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=495345.000000
s hg38.chr15_KI270850v1_alt    172321 58 +    430880 AAGGAACACTGCCTGAATTTATATTGTGATTTTAGAGCATCATTCACTGTTTAAAAAC
s panTro5.chr15              17977713 58 -  83230942 AAGGAGCACTGCCTGAATTTATATTGTGATTTTTGAGCATCATTCACTGTTTAAAAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17203957 58 -  99763055 AAGGAGCACTGCCTGAATTTATATTGTGATTTTAGAGCATCATTCACTGTTTAAAAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       270949 58 +    378907 AAGGAACACTGCCTGAATTTATATTGTGATTTTAGAGCATCATTCACTGTTTAAAAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125306 58 + 121039945 AAGGAACACTGCCTGAATTTATATTGTGATTTTAGAGCATCATTCACTGTTTAAAAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338096 58 + 169600520 AAGGAACACTGCCTGAGTTTATATTGCAATTTTTAAGTATCATTCACTGTTTAAAAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242073 58 + 171882078 AAGGAACACTGCCTGAATTTATATTGCGATTTTTGAGCATCATTCACTGTTTAAAAAC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1793834 58 -   1987038 AAGGAACACTGCCTGAGTTTATATTGCAATTTTTAAGTATCATTCACTGTTTAAAAAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3817680 58 +  24206276 AAGGAACACTGCCTGAATTTATATTGCGATTTTTGAGCATCATTCACTGTTTAAAAAC
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186027 48 -   2853901 GTGGAAAACTGCCTGAATTTATATTGGGATTTTGAAGCACCATT----------AAAC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             485724 48 -   3282555 GTGGAAAACTGCCTGAATTTCTATTGGGATTTTAGAGCACCATT----------AAAC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       272003 48 -   1024465 CTGGAAAACTGCCTGAATTTATATTGGGATTTTGGAGCACCATT----------AAAC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       716936 48 -   3745603 GTGGAAAACTGCCTGAATTTATATTGGAATTTTGGAGCACCATT----------AAAC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 904243 58 - 119751181 AAGGAAAACTGCCTGAATTCATATTGGGATTTTTGAGCACCATCTAATGTTTAAAAAC
i micMur3.chr3              I 9 C 0
s proCoq1.NW_012149419v1       627873 58 -   2566024 AAGGAAAACTGCCTGAATTCATATTGGGATTTTTGAGCACCATCTAATGTTTAAAAAC
i proCoq1.NW_012149419v1    C 0 I 118
s otoGar3.GL873530            6742912 57 -  36342412 AAGGAAAACTGCCTG-ACTCCTATTGGGATTTTTGAGCATCATTTAATGTTTAAAAAT
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              12440 55 -   2180720 ---AAACAGTGCCTGAATTTATATTGGGATTTTTGAGCACCATCCAGTGTTTAATAAC
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55156404  1 + 124595110 I
e canFam3.chr30                 30580 18 -  40214260 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=457651.000000
s hg38.chr15_KI270850v1_alt    172379 69 +    430880 AGGCATATT-CTAGGTAA----TATTTTAAAGACAAATA----GAAAACTTACCTTTTCAAGAT-----GGATATAAAGC----TTA-------
s panTro5.chr15              17977771 69 -  83230942 AGGCATATT-GTGGGTCG----TATTTTAAAGACAAATA----GAAAACTTATCTTTTCAAGAT-----GGATCTAAAGC----TTA-------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204015 69 -  99763055 AGGCATATT-GTGGGTCG----TATTTTAAAGACAAATA----GAAAACTTATCTTTTCAAGAT-----GGATCTAAAGC----TTA-------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271007 69 +    378907 AGGCATATT-GTAGGTAA----TATTTTAAAGACAAACA----GAAAATTTATCTTTTCAAGAT-----GGATATAAAGC----TTA-------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125364 69 + 121039945 AGGCATATT-GTGGGTCA----TATTTTAAAGACAAATA----GAAAACTTATCTTTTCAAGAT-----GGATATAAGGC----TTA-------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338154 69 + 169600520 TGGCAAATT-GTAAGTCA----TATTTTAAAGACAAATA----GAAAACTTATATTTTCAAGAT-----GGATATAAAGC----TTA-------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242131 69 + 171882078 AGGCATATT-GTAGGTCA----TATTTTAAAGACAAATA----GAAAACTTATCTTTTCAAGAT-----GGATATAAAGT----TTA-------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1793892 69 -   1987038 TGGCATATT-GTAAGTCA----TATTTTAAAGACAAATA----GAAAACTTATGTTTTCAAGAT-----GGATATAAAGC----TTA-------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3817738 69 +  24206276 AGGCATATT-GTGGGTCA----TATTTTAAAGACAAATA----GAAAACTTATCTTTTCAAGAT-----GGATATAAAGT----TTA-------
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186075 81 -   2853901 TGGCATATT-GTAGGTCATATTTATTTTAAAGAGAAATAGTAGGAAAACTTATCTTTTCAAGAT-----GGATATAAAGCTTAGTTA-------
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             485772 81 -   3282555 TGGCATATT-GTAGGTCATAATTATTTTAAAGAGAAATAGTAGGAAAACTTATCTTTTCAAGAT-----GGATATAAAGCTTAGTTA-------
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       272051 81 -   1024465 TGGCATATT-GTAGGTCATATTTATTTTAAAGAGAAATAGTAGGAAAACTTATCTTTTCAAGGT-----GGATATAAAGCTTATTTA-------
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       716984 81 -   3745603 TGGCATATT-GTAGGTCATATTTATTTTAAAGAGCAATAGTAGGAAAACTTATCTTTTCGAGAT-----GGATATAAAGCTTAGTTA-------
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 904301 73 - 119751181 TGG-ATATC-ATAGGTCA------TTTTAAAGAGCAATAGTAAGAAAAC-TATCTTTTCGAGATATAG-AGATACAAAGC----TTA-------
i micMur3.chr3              C 0 I 45
s otoGar3.GL873530            6742969 71 -  36342412 TGGCATATTAACAGGTCA------TTTAAAAAAGCCATAGTAAGAAAAC-TATCTTTTCAAGAT-----AGATACAAAGC----CCA-------
i otoGar3.GL873530          C 0 I 4
s dasNov3.JH569975              12495 70 -   2180720 ---------------TCATAT-TATTTTGAATAGGAATA----AGAACACTGTCATTTCAAGATAAAGAAGATACAAAGC----TTAGTTGTTA
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       627931 118 -   2566024 I
e mm10.chr9                  55156404  1 + 124595110 I
e canFam3.chr30                 30580 18 -  40214260 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=136847.000000
s hg38.chr15_KI270850v1_alt    172448 16 +    430880 ACCTTATCAAAATTAC
s panTro5.chr15              17977840 16 -  83230942 ACCTTATCAAAATTAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204084 16 -  99763055 ACCTTATCAAAATTAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271076 16 +    378907 ACCTTATCAAAATTAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125433 16 + 121039945 ACCTTATCAAAATTAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338223 16 + 169600520 ACCTTATCAAAATTAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242200 16 + 171882078 ACCTTATCAAAATTAC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1793961 16 -   1987038 ACCTTATCAAAATTAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3817807 16 +  24206276 ACCTTATCAAAATTAT
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186156 16 -   2853901 ACCTTATCAAAATTAC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             485853 16 -   3282555 ACCTTATCAAAATTAC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       272132 16 -   1024465 ACCTTATCAAAATTAC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       717065 16 -   3745603 ACCTTATCAAAATTAC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6743044 16 -  36342412 ACCTTATAAAAATCAG
i otoGar3.GL873530          I 4 C 0
s dasNov3.JH569975              12565 16 -   2180720 ACCCTGCAAAAATTAA
i dasNov3.JH569975          C 0 I 382
e micMur3.chr3                 904374 45 - 119751181 I
e proCoq1.NW_012149419v1       627931 118 -   2566024 I
e mm10.chr9                  55156404  1 + 124595110 I
e canFam3.chr30                 30580 18 -  40214260 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=110612.000000
s hg38.chr15_KI270850v1_alt    172464 22 +    430880 AAAATGTAAAGCATACGATTGA----
s panTro5.chr15              17977856 22 -  83230942 AAAATGTAAAGGATATGATTGA----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204100 22 -  99763055 AAAATGTGAAGGATATGATTGA----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271092 22 +    378907 AAAATGTAAAGCATACGATTGA----
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125449 22 + 121039945 AAAATGTAAAGGATATGATTGA----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338239 22 + 169600520 AAAATTTAAAGCCTATGATTGA----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242216 22 + 171882078 AAAATGTAAAGCATATTATTGA----
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1793977 22 -   1987038 AAAATTTAAAGCCTATGATTGA----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3817823 22 +  24206276 AAAATGTAAAGCATATTATTGA----
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186172 22 -   2853901 AAAACTTAAAGCATGTGAATTG----
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             485869 22 -   3282555 AAAACTTAAAGGATGTGAATTG----
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       272148 22 -   1024465 AAAACTTAAAGCATGTGAATTG----
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       717081 22 -   3745603 AAAACTTAAAGCATGTGAATTG----
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6743060 22 -  36342412 AAAACTTGAAGTGTATGAAAGA----
i otoGar3.GL873530          C 0 I 3
s dasNov3.JH569975              12963 26 -   2180720 aaaatCTATAGTATAATAGAAAATTG
i dasNov3.JH569975          I 382 C 0
e micMur3.chr3                 904374 45 - 119751181 I
e proCoq1.NW_012149419v1       627931 118 -   2566024 I
e mm10.chr9                  55156404  1 + 124595110 I
e canFam3.chr30                 30580 18 -  40214260 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=628091.000000
s hg38.chr15_KI270850v1_alt    172486 68 +    430880 AAAATATTAATGCATAGGTTTAAATATTGGTCATCATTTTAGATGTCTTTCAAAG-----TAGGTTGTCTCTT
s panTro5.chr15              17977878 68 -  83230942 AAAATATTAATGCATAGGTTTAAATATTGGTCATCATTTTAGATGTCTTTCAAAA-----TAGGTTGTCTCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204122 68 -  99763055 AAAATATTAATGCATAGGTTTAAATATTGGTCATCATTTTAGATTTCTTTCAAAA-----TAGGTTGTCTCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271114 68 +    378907 AAAATATTAATGCATAGGTTTAAATATTGGTCATCATTTTAGATGTCTTTCAAAG-----TAGGTTGTCTCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125471 68 + 121039945 AAAATATTAATGCATAGGTTTAAATATTGGTCATCATTTTAGATGTCTTTCAAAA-----TAGGTTGTCTCTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338261 68 + 169600520 AAAATGTTAATGCATAGATTTAAATATTGGTCATCACTTTAGATGTCTTTCAAAG-----TAGATTGTCTCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242238 53 + 171882078 AAAATATTAATGCATAGGTTTAAATATTAGTCATCATTTTAGATGTCTT--------------------TCTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1793999 68 -   1987038 AAAATGTTAATGCATAGATTTAAATATTGGTCATCACTTTAGATGTCTTTCAAAG-----TAGATTGTCTCTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3817845 53 +  24206276 AAAATATTAATGCATAGGTTTAAATATTAGTCATCATTTTAGATGTCTT--------------------TCTT
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186194 68 -   2853901 AAAATATTAATGCATAGATTTAAATATTAGGCATCATTTTAGATGTCTTTTCAAG-----TAGATTGTCTCTT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             485891 68 -   3282555 AAACTATTAATGCATAGGTTTAAATATTAGGCATCATTTTAGATGTCTTTCCAGG-----TAGAttgtctttt
i saiBol1.JH378276          C 0 I 5918
s cebCap1.NW_016107979v1       272170 68 -   1024465 AAAATATTAATGCATAGGTTTAAATATTAGGCATCATTTTAGATGTCTTTCCAAG-----TAGATTGTCTCCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       717103 68 -   3745603 AAAATATTAATGCATAGGTTTAAATATTAGGCATCATTTAAGATGTCTTTCCAGG-----TAGATTGTCTCTT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 904419 68 - 119751181 AAAATATTAATGCAAAAGTTTAAGAATTGGTCATCATTTTAGATGTCTTTCAAAA-----TAGATTGTCTTTT
i micMur3.chr3              I 45 C 0
s proCoq1.NW_012149419v1       628049 68 -   2566024 AAAATATTAATGCAGAGGTTTAAGAATTGGTCATCATTTTAGATGTCTTTCAAAA-----TAGATTGTCTTTT
i proCoq1.NW_012149419v1    I 118 C 0
s otoGar3.GL873530            6743085 68 -  36342412 AAAATATTAATATATAGGTTTAAGAATTGG---TCATTTTAAA--TCTTTCAAAATACTGTAGATTGTCTTTT
i otoGar3.GL873530          I 3 C 0
s dasNov3.JH569975              12989 68 -   2180720 AAAATGTTATTGCATAGGCTTAAATATTGGTCATCATTTTAGATGTCTTTCAAAA-----TATGTTATCTTTA
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55156404  1 + 124595110 I
e canFam3.chr30                 30580 18 -  40214260 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I

a score=172862.000000
s hg38.chr15_KI270850v1_alt    172554 21 +    430880 AAATATTAA-ACTGAACAAACA
s panTro5.chr15              17977946 21 -  83230942 AAATATTAA-ACTGAACAAACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204190 21 -  99763055 AAATATTAA-ACTGAACAAACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271182 21 +    378907 AAATATTAA-ACTGAACAAACA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125539 21 + 121039945 AAATATTAA-ACTGAACAAACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338329 21 + 169600520 AAATATTTA-GCTGAACAAACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242291 21 + 171882078 AAATATTAA-ACTGAACAAACA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794067 21 -   1987038 AAATATTTA-GCTGAACAAACT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3817898 21 +  24206276 AAATATTAA-ACCGAACAAACA
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186262 21 -   2853901 ATATATTAA-ACTGAACAAACT
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       272238 21 -   1024465 AAATATTAA-ACTGAACAAACT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       717171 21 -   3745603 AAATATTAA-ACTGAACAAACT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 904487 21 - 119751181 AAATATTAC-ACTGAACAAACC
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       628117 21 -   2566024 AAATATTAC-ACCGAAGAAACC
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6743153 20 -  36342412 AAATATTA--AGTGAACAAACC
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              13057 22 -   2180720 AAATATTAACACTGATCAAACC
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55156404  1 + 124595110 I
e canFam3.chr30                 30580 18 -  40214260 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=178228.000000
s hg38.chr15_KI270850v1_alt    172575 23 +    430880 TTGAACTTGTTGTAGAGTTTGTG
s panTro5.chr15              17977967 23 -  83230942 TTGAACATGTTGTAGAGTTTGCG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204211 23 -  99763055 TTGAACATGTTGTAGAGTTTGCG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271203 23 +    378907 TTGAACTTGTTGTAGAGTTTGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125560 23 + 121039945 TTGAACATGTTGTAGAGTTTGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338350 23 + 169600520 TTGAACATGTTGTAGAGTTTGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242312 15 + 171882078 TTGAACAT--------GTTTGTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794088 23 -   1987038 TTGAACATGTTGTAGAGTTTGTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3817919 15 +  24206276 TTGAACAT--------GTTTGTG
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186283 21 -   2853901 TTGAACATGATAT--AGTTTGTG
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       272259 23 -   1024465 TTGAACATGATGTAGAGTTTTTG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       717192 23 -   3745603 TTGAACAAGATGTAGAGTTTGTG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 904508 23 - 119751181 TTGAACATGATGTTGAGTTTGTG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       628138 23 -   2566024 TTAAACATGATGTCGAGTTTGTG
i proCoq1.NW_012149419v1    C 0 I 241
s otoGar3.GL873530            6743173 19 -  36342412 -TGAACATGG---AGAGTTTGTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55156405 23 + 124595110 TCGAATATGATGCAGAGTTTGTG
i mm10.chr9                 I 1 C 0
s dasNov3.JH569975              13079 23 -   2180720 TTAAACATGATGCAGTGTTTGTG
i dasNov3.JH569975          C 0 C 0
e canFam3.chr30                 30580 18 -  40214260 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=183679.000000
s hg38.chr15_KI270850v1_alt    172598 29 +    430880 CTCAAGGT-----TAAGTTTCCTGGGGTGATGGA------------------
s panTro5.chr15              17977990 29 -  83230942 CTCAAGGT-----TAAGTTTCCTGGGGTGATGGA------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204234 21 -  99763055 CTCAAGGT-----TAAGTTTCCTGGG--------------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271226 29 +    378907 CTCAAGGT-----TAAGTTTCCTGGGGTGATGGA------------------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125583 29 + 121039945 CTCAAGGT-----TAAGTTTCCTGGGGTGATGGA------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338373 29 + 169600520 CTCAAGGT-----GAAGTTTCCTGGGGTGATGGA------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242327 29 + 171882078 CTCAAGGT-----TAAATTTGCTGGGGTGATGGA------------------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794111 29 -   1987038 CTCAAGGT-----GAAGTTTCCTGGGGTGATGGA------------------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3817934 29 +  24206276 CTCAAGGT-----TAAATTTCCTGGGGTGATGGA------------------
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186304 29 -   2853901 GCGAAGGT-----TAAGTTTCCTGGGGTGGTGGG------------------
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       272282 29 -   1024465 GTGAAGGT-----TAAGTTTCCTGGGGTGGTGGG------------------
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       717215 29 -   3745603 GTGAAGGT-----TAAGTTTCCTGGGGTGGTGGG------------------
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 904531 26 - 119751181 ---AAGGT-----TAAGTTTCCAGGGGTGATGGA------------------
i micMur3.chr3              C 0 I 127
s otoGar3.GL873530            6743192 26 -  36342412 ---AAGAT-----TAAGTTTCCAGGGGTAGTGGT------------------
i otoGar3.GL873530          C 0 I 5
s mm10.chr9                  55156428 29 + 124595110 TTGAAAGT-----TTTTTCCAGTAGTGTGGTGGA------------------
i mm10.chr9                 C 0 I 3
s dasNov3.JH569975              13102 52 -   2180720 CTGAGGGTTAAGGTAAGTTTCCATGGATGGTGGTGGTAATGGTAGTGATGGA
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       628161 241 -   2566024 I
e canFam3.chr30                 30580 18 -  40214260 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=227316.000000
s hg38.chr15_KI270850v1_alt    172627 42 +    430880 TATTTGATAATATGGATAACAAAAAGTTCTTATTTTAAGAAA
s panTro5.chr15              17978019 42 -  83230942 TATTTTATAATATGGATAACAAAAAGTTTTTACTTTAAGAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204255 25 -  99763055 ------ATAATATGGATAAC-----------GCTTTAAGAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271255 41 +    378907 TATTTGATAATATGGATAACAAAAAGTTCTTA-TTTAAGAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125612 42 + 121039945 TATTTTATAATATGGATAACAAAAAGTTCTTATTTTAAGAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338402 42 + 169600520 TAGTTTATAATATGGATAACAAAAACTTCTTATTTTAAGAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242356 42 + 171882078 TATTTTATAATATGGATAACAAAAACTTCTTATTTTAAGAAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794140 42 -   1987038 TAGTTTATAATATGGATAACAAAAACTTcttattttaagaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3817963 39 +  24206276 TATTTTATAATATGTATAACAAAAA---CTTATTTTAAGAAG
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186333 42 -   2853901 TATTTTATAATATGGAAAACAAAACCTTCTTATTTTAAGAAA
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       272311 42 -   1024465 TATTTTATAATATGGAAAACAAAACCTTCTTATTTTAATAAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       717244 42 -   3745603 TATTTTATAATATGGAAAACAAAACCTTCTTATTTTAAGAAA
i aotNan1.NW_018511953v1    C 0 I 207
s otoGar3.GL873530            6743223 38 -  36342412 ---TATATAATATAGAACACAAGACATTCTTACGTAAGGAA-
i otoGar3.GL873530          I 5 C 0
s mm10.chr9                  55156460 39 + 124595110 TATTTTGTAATATTGAAAACAAAACATTGTTGC---GAAAAA
i mm10.chr9                 I 3 C 0
s dasNov3.JH569975              13154 42 -   2180720 TATTTTATAATGTCAGAGACAGGATGTTcttattgtaaggaa
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 904557 127 - 119751181 I
e proCoq1.NW_012149419v1       628161 241 -   2566024 I
e canFam3.chr30                 30580 18 -  40214260 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=22061.000000
s hg38.chr15_KI270850v1_alt    172669 3 +    430880 TTT
s panTro5.chr15              17978061 3 -  83230942 TTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204280 3 -  99763055 TTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271296 3 +    378907 TTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125654 3 + 121039945 TTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338444 3 + 169600520 TTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242398 3 + 171882078 TTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794182 3 -   1987038 ttt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818002 3 +  24206276 TTT
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186375 3 -   2853901 TTA
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       272353 3 -   1024465 TTT
i cebCap1.NW_016107979v1    C 0 I 218
s otoGar3.GL873530            6743261 3 -  36342412 TTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55156499 3 + 124595110 TTT
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              13196 3 -   2180720 ttt
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 904557 127 - 119751181 I
e proCoq1.NW_012149419v1       628161 241 -   2566024 I
e aotNan1.NW_018511953v1       717286 207 -   3745603 I
e canFam3.chr30                 30580 18 -  40214260 I
e colAng1.NW_012116021v1       297322 0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=112652.000000
s hg38.chr15_KI270850v1_alt    172672 27 +    430880 AGAAAATTTTTAGGCAAAGCTAGAAAA---
s panTro5.chr15              17978064 27 -  83230942 AGAAAATTTTTAGGCAAAACTAGAAAG---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204283 27 -  99763055 AGAAAATTTTTAGGCAAAACTAGAAAG---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271299 27 +    378907 AGAAAATTTTTAGGCAAAGCTAGAAAA---
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125657 27 + 121039945 AGAAAATTTTTAGGCAAAACTAAAAAA---
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338447 27 + 169600520 GGAAAATTTTTAGGCAAAACTAGAAAA---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242401 27 + 171882078 AGAAAATTTTTAGGCAAAACTAGAAAA---
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794185 27 -   1987038 ggaaaatgtttaggcaaaactagaaaa---
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818005 27 +  24206276 AGAAAATTTTTAGGCAAAACTAGAAAA---
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186378 27 -   2853901 AAAAAACATTTAGTCAAAACTAGAATC---
i calJac3.chrY              C 0 I 173
s otoGar3.GL873530            6743264 26 -  36342412 -AGAAATCTGTaagaagaactgaagaa---
i otoGar3.GL873530          C 0 I 2
s mm10.chr9                  55156502 27 + 124595110 AGAAACCAGAGAAGCAAAACAAAACAA---
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              13199 30 -   2180720 agaaaccagataagcaaaactggggggaaa
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 904557 127 - 119751181 I
e proCoq1.NW_012149419v1       628161 241 -   2566024 I
e aotNan1.NW_018511953v1       717286 207 -   3745603 I
e canFam3.chr30                 30580 18 -  40214260 I
e cebCap1.NW_016107979v1       272356 218 -   1024465 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=-5557.000000
s hg38.chr15_KI270850v1_alt    172699 3 +    430880 --TAA
s panTro5.chr15              17978091 3 -  83230942 --TAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204310 3 -  99763055 --TAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271326 3 +    378907 --TAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125684 3 + 121039945 --TAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338474 3 + 169600520 --TAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242428 3 + 171882078 --TCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794212 3 -   1987038 --tat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818032 3 +  24206276 --TCA
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186578 3 -   2853901 --TAT
i calJac3.chrY              I 173 C 0
s otoGar3.GL873530            6743292 2 -  36342412 ---aa
i otoGar3.GL873530          I 2 I 2
s mm10.chr9                  55156529 3 + 124595110 --CAC
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              13229 3 -   2180720 agt--
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 904557 127 - 119751181 I
e proCoq1.NW_012149419v1       628161 241 -   2566024 I
e aotNan1.NW_018511953v1       717286 207 -   3745603 I
e canFam3.chr30                 30580 18 -  40214260 I
e cebCap1.NW_016107979v1       272356 218 -   1024465 I
e colAng1.NW_012116021v1       297322 0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=33012.000000
s hg38.chr15_KI270850v1_alt    172702 8 +    430880 TACCAATA
s panTro5.chr15              17978094 8 -  83230942 TACCGATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204313 8 -  99763055 TACCGATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271329 7 +    378907 TACC-ATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125687 8 + 121039945 TACTGATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338477 8 + 169600520 TACTGATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242431 8 + 171882078 TACCTATA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794215 8 -   1987038 tactgata
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818035 8 +  24206276 TACCGATA
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186581 8 -   2853901 TACCTATA
i calJac3.chrY              C 0 C 0
s aotNan1.NW_018511953v1       717493 8 -   3745603 TACCTATA
i aotNan1.NW_018511953v1    I 207 C 0
s otoGar3.GL873530            6743296 8 -  36342412 cacctgtc
i otoGar3.GL873530          I 2 C 0
s mm10.chr9                  55156532 8 + 124595110 AACCTCTC
i mm10.chr9                 C 0 I 2
s dasNov3.JH569975              13232 8 -   2180720 cacctata
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 904557 127 - 119751181 I
e proCoq1.NW_012149419v1       628161 241 -   2566024 I
e canFam3.chr30                 30580 18 -  40214260 I
e cebCap1.NW_016107979v1       272356 218 -   1024465 I
e colAng1.NW_012116021v1       297322 0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=314390.000000
s hg38.chr15_KI270850v1_alt    172710 50 +    430880 ATTCTACCACTCAGAATGTACCACTATCAGAATTTTG------TATCTTT-CAGTCA
s panTro5.chr15              17978102 50 -  83230942 ATTCTACCACTCAGAATGTACCACTATCAGAATTTTG------TATCTTT-CAGTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204321 50 -  99763055 ATTCTACCACTCAGAATGTACCACTATCAGAATTTTG------TATCTTT-CAGTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271336 50 +    378907 ATTCTACCACTCAGAATGTACCACTATCAGAATTTTG------TATCTTT-CAGTCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125695 50 + 121039945 ATTCTATCACTCAGAATGTACCACTATCAGAATCTTG------TATCTTT-CAGTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338485 51 + 169600520 ATTCTACCACTCAGAATGTACCACTATCAGAATTTTG------TATCTTTCCAGTCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242439 51 + 171882078 ATTCTACCACTCAGAATGTGCCACCATGAGAATTTTG------TATTTTTCCAGTCC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794223 51 -   1987038 attctaccactcagaatgtaccactatcagaattttg------tatctttccagtcc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818043 51 +  24206276 ATTCTACCACTCAGAATGTGCCACCATGAGAATTTTG------TATCTTTCCAGTCC
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186589 51 -   2853901 ATTCTACCACTCAGAAGATACCACTATCAGAATTTTG------TATCTTTCTGGTCA
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       272574 51 -   1024465 ATTCTACCACTCAGAAGATACCACTATCAGAATTTTG------TATCTTTCTGGTCA
i cebCap1.NW_016107979v1    I 218 C 0
s aotNan1.NW_018511953v1       717501 51 -   3745603 ATTCTACCACTCAGAAGATACCACTATCAGAATTTTG------TATCTTTCTGGTCA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6743304 53 -  36342412 atcttaccactcagaagataccactctc--aattttggtata-tatcttt-tagctg
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55156542 48 + 124595110 ATTATACTACTCA-------CTGCTAT--AAATTTTGGATTAGTATCTTTCTAGTCA
i mm10.chr9                 I 2 I 9
s dasNov3.JH569975              13240 50 -   2180720 attctaccac-cagaaaagac-----ttaaaattttgatata-tatctttctggtTA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 904557 127 - 119751181 I
e proCoq1.NW_012149419v1       628161 241 -   2566024 I
e canFam3.chr30                 30580 18 -  40214260 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=265143.000000
s hg38.chr15_KI270850v1_alt    172760  45 +    430880 TCTG------------------CTCATCTCTTTTC--TCCTTTGCTTG-------------------------------TATGTGT------------------------------TCCCTCTCCC
s panTro5.chr15              17978152  45 -  83230942 TCTG------------------CTCATCTCTTTTC--TCCTTTGCTTG-------------------------------TATGTGT------------------------------TCCCTCTCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204371  45 -  99763055 TCTG------------------CTCATCTCTTTTC--TCCTTTGCTTG-------------------------------TATGTGT------------------------------TCCCTCTCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271386  45 +    378907 TCTG------------------CTCATCTCTTTTC--TCCTTTGCTTG-------------------------------TATGTGT------------------------------TCCCTCTCCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125745  45 + 121039945 TCTG------------------CTCATCTCTTTTC--TCCTTTGCTTG-------------------------------TATGTGT------------------------------TCCCTCTCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338536  45 + 169600520 TCTG------------------CTTATCTCTTTTC--GCCTACGTTTG-------------------------------TATGTGT------------------------------TTCCTCTCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242490  45 + 171882078 TCTG------------------CTCATCTCTTTTC--TCCTGTGCTTG-------------------------------TATGTGT------------------------------TCCCTCTCCC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794274  45 -   1987038 tttg------------------ctcatctcttttc--tcctacgtttg-------------------------------tatgtgt------------------------------ttcctctccc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818094  45 +  24206276 TCTG------------------CTCATCTCTTTTC--TCCTGTGCTTG-------------------------------TATGTGT------------------------------TCCCTCTCCC
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186640  48 -   2853901 TCTG------------------CTCATCTCTTTTC--CCCAATGGTTA-------------------------------TATGTAT---------------------------TCCTCCTTCTTCC
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       272625  45 -   1024465 TCTG------------------CTCATCTCTTTTC--TCCAATGCTTA-------------------------------TATATGT------------------------------TCCTTCTTCC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       717552  45 -   3745603 TCTG------------------CTCATGTCTTTTC--TCCAATGCTTA-------------------------------TATGTGT------------------------------TCCTTTTTCC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 904684  45 - 119751181 TCTG------------------GTCATCTCTTTTC--TCCTGTGCTTA-------------------------------TATTTAC------------------------------TCCCTCTCTC
i micMur3.chr3              I 127 C 0
s otoGar3.GL873530            6743357  36 -  36342412 --------------------------tctc-tttc--tcttacactta-------------------------------tatttac------------------------------TCCCTCCCTC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55156599 124 + 124595110 TCTGTTTTATGCGGTTCCCCCCCTCCCCTTTTTTt--tttcttttttggggataggatctttctgtaaagtcctggaactctgtgtagaccaggctggtcttaaatgaacagtcctcctctgcctc
i mm10.chr9                 I 9 C 0
s dasNov3.JH569975              13290  47 -   2180720 TCTG------------------GTCTTTTTTATTCCTCCCTTTACTTA-------------------------------TGTATAC------------------------------TCCCTTTCCC
i dasNov3.JH569975          C 0 I 524
e proCoq1.NW_012149419v1       628161 241 -   2566024 I
e canFam3.chr30                 30580  18 -  40214260 I
e colAng1.NW_012116021v1       297322   0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=135927.000000
s hg38.chr15_KI270850v1_alt    172805 33 +    430880 -TTA-------AAA------------------------------------------------------AAATCAGA--TTTTTTATTATAATCTGCA
s panTro5.chr15              17978197 33 -  83230942 -TT--------AAA------------------------------------------------------AAATCAGA-TTTTTTTTTTGTAATCTGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204416 29 -  99763055 -TT--------AAA------------------------------------------------------AAATCAG-----TTTTTTTGTAATCTGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271431 32 +    378907 -TT--------AAA------------------------------------------------------AAATCAGA--TTTTTTTTTATAATCTGCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125790 31 + 121039945 -TT--------AAA------------------------------------------------------AAATCAGA---TTTTTTTTGTAATCTGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338581 32 + 169600520 -TT--------ACA------------------------------------------------------AAATCAGA--TTTGTTTTTGTAATCTGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242535 33 + 171882078 -TT--------ACA------------------------------------------------------AAATCAGA-TTTTTTTTTTGTAATCTGCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794319 32 -   1987038 -tt--------aca------------------------------------------------------aaatcaga--tttgtttttgtaatctgct
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818139 33 +  24206276 -TT--------ACA------------------------------------------------------AAATCAGA-TTTTTTTTTTGTAATCTGCT
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186688 30 -   2853901 -TT--------AAA------------------------------------------------------AAATCAGA----TTTTTTTGTGATCTGCT
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       272670 32 -   1024465 -TT--------AAA------------------------------------------------------AAATCAGC--TTTTTTTTTGTAATGTGCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       717597 30 -   3745603 -TT--------AAA------------------------------------------------------AAATCAGA----TATTTTTGTGATCTGCT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 904729 38 - 119751181 -TTTTTTAAAAAAA------------------------------------------------------AAATCAGA----TTATTTTATAATCTTCT
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6743393 30 -  36342412 -TTCTT-----AAA------------------------------------------------------AGATCAGA----TTATTTTGTAATCT---
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55156723 84 + 124595110 -tt--------aaattttggggctaaaggcatatgccatcacatctggctACCATTTTGAAAAATGATAAATGGGA----TTGTTTTGTCATATTCT
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              13861 35 -   2180720 TTT--------AAA------------------------------------------------------AATTTTAAAAATCTGTTTTGTAATCTGTT
i dasNov3.JH569975          I 524 C 0
e proCoq1.NW_012149419v1       628161 241 -   2566024 I
e canFam3.chr30                 30580 18 -  40214260 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=231470.000000
s hg38.chr15_KI270850v1_alt    172838 24 +    430880 -TTTTCACTCAACAATATTGTAGAT
s panTro5.chr15              17978230 24 -  83230942 -TGTTCACTCAACAATATTGTAGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204445 24 -  99763055 -TGTTCACTCAACAATATTGTAGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271463 24 +    378907 -TTTTCACTCAACAATATTGTAGAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125821 24 + 121039945 -TGTTCACTCAACAATATTGTGGAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338613 24 + 169600520 -TTCTCACTCAACAATATTGTAGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242568 24 + 171882078 -TTTTCACTCAACAATATTGTAGAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794351 24 -   1987038 -ttctcactcaacaatatTGTAGAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818172 24 +  24206276 -TTTTCACTCAACAGTATTGTAGAT
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186718 24 -   2853901 -TTTTCACTCAACAATATTGTAGAT
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       272702 24 -   1024465 -TTTTCACTCAACAATATTGTAGAT
i cebCap1.NW_016107979v1    C 0 I 15
s aotNan1.NW_018511953v1       717627 24 -   3745603 -TTTTTACTCAACAATATTGTAGAT
i aotNan1.NW_018511953v1    C 0 I 18
s micMur3.chr3                 904767 24 - 119751181 -TTTTCACTCTACAGTATTGTAGAT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       628402 24 -   2566024 -TTTTCACTCCACAATATTGTAGAT
i proCoq1.NW_012149419v1    I 241 C 0
s otoGar3.GL873530            6743423 24 -  36342412 -TTCTTACTGCACAATATTGTAGGT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55156807 23 + 124595110 --TCTCACTTAACAGTGTTGTGACT
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              13896 25 -   2180720 TTTTTAATTCAGTGATATTGTAGAT
i dasNov3.JH569975          C 0 C 0
e canFam3.chr30                 30580 18 -  40214260 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=47347.000000
s hg38.chr15_KI270850v1_alt    172862 9 +    430880 CTGTGTCAT
s panTro5.chr15              17978254 9 -  83230942 TTGTGTCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204469 9 -  99763055 TTGTGTCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271487 9 +    378907 CTGTGTCAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125845 9 + 121039945 CTGTGTCAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338637 9 + 169600520 CCGTGTCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242592 9 + 171882078 CCATGTCAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794375 9 -   1987038 CCGTGTCAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818196 9 +  24206276 CCGTGTCAG
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186742 9 -   2853901 TCACGTTAT
i calJac3.chrY              C 0 C 0
s micMur3.chr3                 904791 9 - 119751181 TTGTGTCAT
i micMur3.chr3              C 0 I 289
s proCoq1.NW_012149419v1       628426 9 -   2566024 CTGTGTCAT
i proCoq1.NW_012149419v1    C 0 I 198
s otoGar3.GL873530            6743447 9 -  36342412 TTGTGTCAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55156830 9 + 124595110 CTGTATCTT
i mm10.chr9                 C 0 C 0
e aotNan1.NW_018511953v1       717651 18 -   3745603 I
e dasNov3.JH569975              13921 0 -   2180720 C
e canFam3.chr30                 30580 18 -  40214260 I
e cebCap1.NW_016107979v1       272726 15 -   1024465 I
e colAng1.NW_012116021v1       297322 0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=23425.000000
s hg38.chr15_KI270850v1_alt    172871 6 +    430880 AAGTTA
s panTro5.chr15              17978263 6 -  83230942 AAGTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204478 6 -  99763055 AAGTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271496 6 +    378907 AAGTTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125854 6 + 121039945 AAGTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338646 6 + 169600520 AAGTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242601 6 + 171882078 AAGTTA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794384 6 -   1987038 AAGTTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818205 6 +  24206276 AAGTTA
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186751 6 -   2853901 AACTTA
i calJac3.chrY              C 0 C 0
s otoGar3.GL873530            6743456 2 -  36342412 ----TA
i otoGar3.GL873530          C 0 I 7
s mm10.chr9                  55156839 6 + 124595110 TCGTTG
i mm10.chr9                 C 0 I 4
e micMur3.chr3                 904800 289 - 119751181 I
e proCoq1.NW_012149419v1       628435 198 -   2566024 I
e aotNan1.NW_018511953v1       717651 18 -   3745603 I
e dasNov3.JH569975              13921 0 -   2180720 C
e canFam3.chr30                 30580 18 -  40214260 I
e cebCap1.NW_016107979v1       272726 15 -   1024465 I
e colAng1.NW_012116021v1       297322 0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=212800.000000
s hg38.chr15_KI270850v1_alt    172877 67 +    430880 TTCCTCTACAGTGCCTTCAGTTATTGTGTGCTTTGTGTTGGATAAC-TATACCA---TCTAGTCTTTCATG
s panTro5.chr15              17978269 67 -  83230942 CTCCTCTACAGTGCCTTCAGTTATTGTGTGCTTTGTGTTGGATGAC-TGTACCA---TCTAGTCTTTCATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204484 67 -  99763055 CTCCTCTACAGTGCCTTCAGTTATTGTGTGCTTTGTGTTGGATGAC-TGTACCA---TCTAGTCTTTCATG
i panPan2.chr15             C 0 I 9
s gorGor5.CYUI01015946v1       271502 67 +    378907 CTCCTCTACAGTGCCTTCAGTTATTGTGTGCTTTTTGTTGGATAAC-TATACCA---TCTAGTCTTTCATG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125860 67 + 121039945 CTCCTGTACAGTGCCTTCAGTTCTTGTGTGCTTTCTGTTGGATGAC-TGTACCA---TCTAGTCTTTCGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338652 68 + 169600520 CTGCTCTACAGTGCCTTCAGTTACTGTGTGCTTTGTGTTGGATGACTTGTACCA---TCAAGTCAGTCATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242607 66 + 171882078 CTCCTCTACAGTGCCTTCAGTTATTGTGTGCTTTGTGTTGGATGAC-TGTACCG---TCTAGTCA-TTGTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794390 67 -   1987038 CTCCTCTACAGTGCCTTCAGTTACTGTGTGCTTTGTGTTGGATGAC-TGTACCA---TAAAGTCAGTCATG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818211 66 +  24206276 CTCCTCTACAGTGCCTTCAGTTATTGTGTGCTTTGTGTTGGATGAC-TGTACCG---TCTAGTCA-TTGTG
i chlSab2.chr29             C 0 C 0
s otoGar3.GL873530            6743465 53 -  36342412 GTCCTGTACAGTGGCTCCAATTGTTGT--------------ATGAG-TGTACTA---TCTAGTCAGTCTTG
i otoGar3.GL873530          I 7 C 0
s mm10.chr9                  55156849 38 + 124595110 CTCTTCTATGATAC--------------------------GATAAA-T---CCA---TCTAGCGAGTTCTG
i mm10.chr9                 I 4 C 0
s dasNov3.JH569975              13921 66 -   2180720 -TCACCTACAGTGTCTTTATCTTTTG---GTGTTATACTGTATGAC-CATATTATGGTATAATCAGTCATG
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 904800 289 - 119751181 I
e proCoq1.NW_012149419v1       628435 198 -   2566024 I
e aotNan1.NW_018511953v1       717651 18 -   3745603 I
e calJac3.chrY                 186757  0 -   2853901 C
e canFam3.chr30                 30580 18 -  40214260 I
e cebCap1.NW_016107979v1       272726 15 -   1024465 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=63105.000000
s hg38.chr15_KI270850v1_alt    172944 97 +    430880 TTTCCTGGTACTGACTACATAAGGGTgagagagagagagagagagagagagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtg------tgtgtA
s panTro5.chr15              17978336 71 -  83230942 TTTCCTGGTACTGACTACATAGGGGT----------------gagagagagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtg----------------
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271569 76 +    378907 TTTCCTGGTACTGACTACATAAGGGT----------------GAGAGAGAGAGAGAGAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATT------T-----
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125927 65 + 121039945 TTTCCGGGTACTGACTACATAGGGGT----------------GAGAGAGAGAGAGA------gtgtgtgtgtgtgtgtgtgtATTTT----------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338720 64 + 169600520 TTTCTTGGTACTGAATATATAGCGgt----------------------------gtgtgtgtgtgtgtgtgtgtttgtgtgtatatgtgtg------t-----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242673 70 + 171882078 TTTCCTGGTACTGAATACATAGGGGT----------------------------GAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTTT-----
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794457 64 -   1987038 TTTCTTGGTACTGAATATATAGCGGG----------------------------gtgtgtgtgtgtgtgtgtttgtgtgtgtatatgtgtg------t-----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818277 67 +  24206276 TTTCCTGGTACTGAATACATAGGGGT----------------------------GAAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATT---TTTT-----
i chlSab2.chr29             C 0 C 0
s otoGar3.GL873530            6743518 38 -  36342412 TCTCCTAGTACTGCACATATAAATGT------------------------------------------------------GTTTGGGTTTT------T-----
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55156887 39 + 124595110 TCTCCTAATATTGGCCATGCAGGTGG------------------------------------CTGT-------------TGCATCTG----------T-----
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              13987 46 -   2180720 ACTGCTGATATTGAATGTATTAGTGG---------------------------------------tttctttttcttttttcttt------------------
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 904800 289 - 119751181 I
e proCoq1.NW_012149419v1       628435 198 -   2566024 I
e aotNan1.NW_018511953v1       717651 18 -   3745603 I
e calJac3.chrY                 186757  0 -   2853901 C
e canFam3.chr30                 30580 18 -  40214260 I
e cebCap1.NW_016107979v1       272726 15 -   1024465 I
e panPan2.chr15              17204551  9 -  99763055 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=60751.000000
s hg38.chr15_KI270850v1_alt    173041 18 +    430880 TTTTTTTTCTACCTTAAC
s panTro5.chr15              17978407 14 -  83230942 ----tTTTCTACCTTAAC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271645 14 +    378907 ----TTTTCTACCTTAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102125992 14 + 121039945 ----TTTTCTACCTTAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338784 14 + 169600520 ----TTTTCTGTCTTAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242743 14 + 171882078 ----TTTTCTACCTTAAC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794521 14 -   1987038 ----ttttctgtCTTAAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818344 14 +  24206276 ----TTTTCTACCTTAAC
i chlSab2.chr29             C 0 C 0
s otoGar3.GL873530            6743556 14 -  36342412 ----TTTTCTGTCATAAA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55156926 14 + 124595110 ----TTTCCTATTTTAAG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 30598 18 -  40214260 ttttttttctATTTTAAA
i canFam3.chr30             I 18 C 0
s dasNov3.JH569975              14033 18 -   2180720 ctttttttctgttttAAA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 904800 289 - 119751181 I
e proCoq1.NW_012149419v1       628435 198 -   2566024 I
e aotNan1.NW_018511953v1       717651 18 -   3745603 I
e calJac3.chrY                 186757  0 -   2853901 C
e cebCap1.NW_016107979v1       272726 15 -   1024465 I
e panPan2.chr15              17204551  9 -  99763055 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=259962.000000
s hg38.chr15_KI270850v1_alt    173059 63 +    430880 TAATGCTTTGGACATCAACAGGTAGAG--C----TAA----------------------ATCCTTGAAACCTTCC-----AAGTGGTGGCTTTCAG
s panTro5.chr15              17978421 63 -  83230942 TAATGCTTTGGACATCAACAGGTAGAG--C----TAA----------------------ATCCTTGAAACCTTCC-----AAGTGGTGGCTTTCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204560 63 -  99763055 TAATGCTTTGGACATCAACAGGTAGAG--C----TAA----------------------ATCCTTGAAACCTTCC-----AAGTGGTGGCTTTCAG
i panPan2.chr15             I 9 C 0
s gorGor5.CYUI01015946v1       271659 67 +    378907 TAATGCTTTGGACATCAACAGGTAGAG--CTAAATAA----------------------ATCCTTGAAACCTTCC-----AAGTGGTGGCTTTCAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126006 62 + 121039945 TAATGTTTTGGACAT-AACAGGTAGAG--C----TAA----------------------ATCCTTGAAACCTTCC-----AAGTGGTGGCTTTCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338798 63 + 169600520 TAATGTTTTAGACATCAATAGGTAGAG--C----TAA----------------------ATCCTTAAAACCTTCC-----AAGTGGTGGCTTTCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242757 61 + 171882078 TAATG-TTTGGACATCCATAGGTAGAG--C----TAA----------------------ATCCTTGAAACCTTCC-----AAGTGA-GGCTTTCAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794535 63 -   1987038 TAATGTTTTAGACATCAATAGGTAGAG--C----TAA----------------------ATCCTTAAAACCTTCC-----AAGTGGTGGCTTTCAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818358 61 +  24206276 TAATG-TTTGGACATCCATAGGTAGAG--C----TAA----------------------ATCCTTGAAACCTTCC-----AAGTGG-GGCTTTCAG
i chlSab2.chr29             C 0 C 0
s otoGar3.GL873530            6743570 88 -  36342412 TAATGCTTTGAACATTAATAGCTAGAG--C----TAATTACTTGTGAATGTAGATCATGTTCTTTGAAACCTTCCTAG--AAGTGGTGACTTTAAT
i otoGar3.GL873530          C 0 I 3
s mm10.chr9                  55156940 79 + 124595110 TAGCACTCTGAGCATCAGTAGATGGAATCC----TAG-------TGCACATAGGAAAT-GCCCGTGAAGTTTTCC-----TATAGGTTGCTTTTAA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 30616 88 -  40214260 TAATGCTTTGGACTCTAAGAGCTAGAG--C----TAAATCCTTACGTGTATAGGTAATGTCCTTTGAAACTTCCCTGG--AAGTGTTGGCTTTCCA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              14051 90 -   2180720 TAATGCTTTGAACATCAATAGCTAGAG--C----TAAATCCTTGTTCAAATAGGTAATGTCCTTTGAAACATTCCTAGACATGTAATGGCTTTCAA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 904800 289 - 119751181 I
e proCoq1.NW_012149419v1       628435 198 -   2566024 I
e aotNan1.NW_018511953v1       717651 18 -   3745603 I
e calJac3.chrY                 186757  0 -   2853901 C
e cebCap1.NW_016107979v1       272726 15 -   1024465 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=219948.000000
s hg38.chr15_KI270850v1_alt    173122 40 +    430880 TT---ATT-GCTGAATTGGTTTTTAGAGATGGAACAAATTATAT
s panTro5.chr15              17978484 40 -  83230942 TT---ATT-GCTGCATTGGTTTCTAGAGATGGAACAAATTATAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204623 40 -  99763055 TT---ATT-GCTGCATTGGTTTCTAGAGATGGAACAAATTATAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271726 40 +    378907 TT---ATT-GCTGAATTGGTTTTTAGAGATGGAACAAATTATAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126068 40 + 121039945 TT---ATT-GCTGAACTGGTTTTTAGAGATGGAACAAATTATAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338861 43 + 169600520 TTCTCATT-ACTGAATTGCTTTCTAGAGATGGAACAAATTATAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242818 43 + 171882078 TTCTCATT-GCTGAATTAGTTTCTAGACATGGAGCAAATTATAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794598 43 -   1987038 TTCTCATT-ACTGAATTGCTTTCTAGAGATGGAACAAATTATAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818419 43 +  24206276 TTCTCATT-GCTGAATTGGTTTCTAGACATGGAGCAAATTATAT
i chlSab2.chr29             C 0 C 0
s proCoq1.NW_012149419v1       628633 40 -   2566024 TT---ATT-GCTGAACTGGTTTCTAGAGATGGAATAAATTATAT
i proCoq1.NW_012149419v1    I 198 C 0
s otoGar3.GL873530            6743661 31 -  36342412 TT---ATT-GCTGAATTGGTCTCTAG---------AAATTATAT
i otoGar3.GL873530          I 3 C 0
s mm10.chr9                  55157019 43 + 124595110 TTCTTGTT-GCAGATTTGGTTTCTGAAGGTAGAACAAATTATAT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 30704 44 -  40214260 TTCCTATTCAATCAGTTGGTTTCTGGAGACAATACAAATTGCAT
i canFam3.chr30             C 0 I 5
s dasNov3.JH569975              14141 43 -   2180720 TTTTTATT-GCTGAATTGGTTTTTGGAGATGTAACAAATTACAC
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 904800 289 - 119751181 I
e aotNan1.NW_018511953v1       717651 18 -   3745603 I
e calJac3.chrY                 186757  0 -   2853901 C
e cebCap1.NW_016107979v1       272726 15 -   1024465 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=58266.000000
s hg38.chr15_KI270850v1_alt    173162 11 +    430880 TG-----TATGGAAAC
s panTro5.chr15              17978524 11 -  83230942 TG-----TATGGAAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204663 11 -  99763055 TG-----TATGGAAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271766 11 +    378907 TG-----TATGGAAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126108 11 + 121039945 TG-----TATGGAAAC
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr7               60338904 11 + 169600520 TG-----TATGGAAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242861 11 + 171882078 TG-----TATGGAAAA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794641 11 -   1987038 TG-----TATGGAAAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818462 11 +  24206276 TG-----TATGGAAAA
i chlSab2.chr29             C 0 C 0
s proCoq1.NW_012149419v1       628673 11 -   2566024 TG-----TATAGGAAC
i proCoq1.NW_012149419v1    C 0 I 2
s otoGar3.GL873530            6743692 11 -  36342412 TG-----TATAGGAAT
i otoGar3.GL873530          C 0 I 2
s mm10.chr9                  55157062 16 + 124595110 TGTACTATATAGAAAC
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              14184 11 -   2180720 TA-----TATAGGAAC
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 904800 289 - 119751181 I
e aotNan1.NW_018511953v1       717651 18 -   3745603 I
e calJac3.chrY                 186757  0 -   2853901 C
e canFam3.chr30                 30748  5 -  40214260 I
e cebCap1.NW_016107979v1       272726 15 -   1024465 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=819.000000
s hg38.chr15_KI270850v1_alt    173173 3 +    430880 ttt
s nomLeu3.chr6              102126120 3 + 121039945 ttt
i nomLeu3.chr6              I 1 C 0
s dasNov3.JH569975              14195 3 -   2180720 TTT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 904800 289 - 119751181 I
e proCoq1.NW_012149419v1       628684 2 -   2566024 I
e aotNan1.NW_018511953v1       717651 18 -   3745603 I
e mm10.chr9                  55157078 0 + 124595110 C
e calJac3.chrY                 186757 0 -   2853901 C
e canFam3.chr30                 30748 5 -  40214260 I
e cebCap1.NW_016107979v1       272726 15 -   1024465 I
e otoGar3.GL873530            6743703 2 -  36342412 I
e panPan2.chr15              17204674 0 -  99763055 C
e colAng1.NW_012116021v1       297322 0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3818473 0 +  24206276 C
e cerAty1.NW_012002657v1      1794652 0 -   1987038 C
e macFas5.chr7               65242872 0 + 171882078 C
e rheMac8.chr7               60338915 0 + 169600520 C
e saiBol1.JH378276             485959 5918 -   3282555 I
e gorGor5.CYUI01015946v1       271777 0 +    378907 C
e panTro5.chr15              17978535 0 -  83230942 C

a score=-1921.000000
s hg38.chr15_KI270850v1_alt    173176 8 +    430880 tttttttt----
s panTro5.chr15              17978535 5 -  83230942 ---ttttt----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204674 3 -  99763055 -----ttt----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271777 7 +    378907 -ttttttt----
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126123 8 + 121039945 tttttttt----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338915 3 + 169600520 -----TCt----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242872 3 + 171882078 -----ttt----
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794652 3 -   1987038 -----TCt----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818473 3 +  24206276 -----ttt----
i chlSab2.chr29             C 0 C 0
s otoGar3.GL873530            6743705 9 -  36342412 ---TTTTTCCTT
i otoGar3.GL873530          I 2 C 0
e micMur3.chr3                 904800 289 - 119751181 I
e proCoq1.NW_012149419v1       628684 2 -   2566024 I
e aotNan1.NW_018511953v1       717651 18 -   3745603 I
e mm10.chr9                  55157078 0 + 124595110 C
e calJac3.chrY                 186757 0 -   2853901 C
e dasNov3.JH569975              14198 0 -   2180720 C
e canFam3.chr30                 30748 5 -  40214260 I
e cebCap1.NW_016107979v1       272726 15 -   1024465 I
e colAng1.NW_012116021v1       297322 0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=232759.000000
s hg38.chr15_KI270850v1_alt    173184 84 +    430880 -ttttttgagacaaagtctcac-cttgtcgcccaggctggagagcaatggcatgatcttggctcactgcaatctctgcctcccagg
s panTro5.chr15              17978540 84 -  83230942 -ttttttgagacaaagtctcac-cttgtcacccaggctggagggcagtggcatgatcttggctcactacaacctccacctcccagg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204677 84 -  99763055 -ttttttgagacaaagtctcac-cttgtcacccaggctggagggcagtggcatgatcttggctcactacaacctccacctcccagg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271784 84 +    378907 -ttttttgagacaaagtcttac-cttttcgcccaggctggagagcagtggcatgatcttggctcactacaatctctgcttcccagg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126131 84 + 121039945 -ttttttgaaacaaagtctcac-cttgtcgcccaggctggagggcaatggcatgatcttggctcactacaacctccgcctcccagg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60338918 85 + 169600520 -ttttctgagatgaagccttgctcttgtcatctaggctggagtgcaatggcgtgaacttggctcactgcaacctccatctcccagg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242875 86 + 171882078 gttttttgagataaagtctcgctcttgtcacccaggctggagtgcagtggcatgatcttggctcactacaaccactgcctcccaga
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1794655 85 -   1987038 -ttttctgagatgaagccttgctcttgtcatccaggctggagtgcaatggcgtgaacttggctcactgcaacctccatctcccagg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818476 86 +  24206276 gttttttgagataaagtctcgctcttgtcgcccaggctggagtgcagtggcatgatcttggctcactacaacctctgcctcccaga
i chlSab2.chr29             C 0 C 0
e micMur3.chr3                 904800 289 - 119751181 I
e proCoq1.NW_012149419v1       628684  2 -   2566024 I
e aotNan1.NW_018511953v1       717651 18 -   3745603 I
e mm10.chr9                  55157078  0 + 124595110 C
e calJac3.chrY                 186757  0 -   2853901 C
e dasNov3.JH569975              14198  0 -   2180720 C
e canFam3.chr30                 30748  5 -  40214260 I
e cebCap1.NW_016107979v1       272726 15 -   1024465 I
e otoGar3.GL873530            6743714  0 -  36342412 C
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=724156.000000
s hg38.chr15_KI270850v1_alt    173268 203 +    430880 ttcaagtgattctcttgcctcagcctcccaagtagttgggattacaggtgcttgccaccatgcccggctaatttttgtctt-tttactagagatggggtttcatcatgttggccaggcttgtctcgaactcctgacctcaggtgatccactcaccttggcctcccaaactactgggattacaggcataagccaccatacccagc
s panTro5.chr15              17978624 203 -  83230942 ttcaagtgattctcttgcctcagcctcccgagtagttgggattacaggtgcctgccaccatgcctggctaatttttgtgtt-tttactagagatggggtttcattatgttggccaggcttgtctcgaactcctgacctcaggtgatccactcaccttggcctcccaaagtactgggattataggcatgagccaccacacccagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204761 203 -  99763055 ttcaagtgattctcttgcctcagcctcccgagtagttgggattacaggtgcctgccaccatgcctggctaatttttgtgtt-tttactagagatggggtttcattatgttggccaggcttgtctcgaactcctgacctcaggtgatccactcaccttggcctcccaaagtactgggattataggcatgagccaccacacccagc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       271868 203 +    378907 ttcaagtgattctcttgcctcagcctcccgagtagttgggattacaggtgcttgccaccatgcccggctaatgtttgtgtt-tttactagagatggggtttcatcatgttggccaggcttgtctcgaactcccgacctcaggtgatccactcaccttggcctcccaaagtactgggattacaggcataagccaccatacccagc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126215 203 + 121039945 ttcaaatgattctcttgcctaagcctcccgagtacttgggattacaggtgcctgccaccatgcccagctaatttttgtgtt-tttactagagatggggtttcatcatgttggccaggcttgtctcgaactcctgacctcgggtgatccactcaccttggcctcccaaagtactgggattacaggcatgagccaccatacccagc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60339003 203 + 169600520 ctcaagcaattctcctgcctcagcctctcaagtagctgggattacaggcacctgccaccattcctggctaatttttgtatt-tttagtagagaccggatttcaccatgttgtccaggcaggtctcgaactcctgacctcaggtgatctgcccgcctcggcctcccgaagtgctgggattacaggcatgagccaccatacctggA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65242961 203 + 171882078 ttcaagtgattctcctgcctcagcctcccgagtagcagggattacaggagcctgccaccatgcctggctaatttttgtatt-tttagtagagatggggtttcatcatgttggccgggctggtctggagctcctgaccttgggtgatccactcaccttggcctcccaaagtgctgggattacaggcatgagccaccacacccggc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5322991 203 -   6271500 ttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcacccgccaccacgcctggctaacttttgtgttgtttagtagagatgaggtttcaccatgttggccaggctggtctggaactcctgaccttgggtgatccactctccttggtctctgaaagtgctgggatt-caggtatgagccaccacacccagc
i macNem1.NW_012011056v1    N 0 C 0
s cerAty1.NW_012002657v1      1794740 203 -   1987038 ctcgagcaattctcctgcctcagcctcccaagtagctgggattacaggcacctgccaccattcctggctaatttttgtatt-tttagtagagaacggatttcaccatgttgtccaggcaggtctcgaactcctgacctcaggtgatctgcccgcctcagcctcccgaagtgctgggattacaggcatgagccaccatacctggA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818562 203 +  24206276 ttcaagtgattctcctgcctcagcctcccgagtagcagggattacaggagcctgccaccatgcctggctaatttttgtatt-tttagtagagatggggtttcaccatgttggccaggctggtctggagctcctgaccttgggtgatccactcaccttggcctcccaaagtgctgggattacaggcatgagccaccacacccggc
i chlSab2.chr29             C 0 C 0
e micMur3.chr3                 904800 289 - 119751181 I
e proCoq1.NW_012149419v1       628684   2 -   2566024 I
e aotNan1.NW_018511953v1       717651  18 -   3745603 I
e mm10.chr9                  55157078   0 + 124595110 C
e calJac3.chrY                 186757   0 -   2853901 C
e dasNov3.JH569975              14198   0 -   2180720 C
e canFam3.chr30                 30748   5 -  40214260 I
e cebCap1.NW_016107979v1       272726  15 -   1024465 I
e otoGar3.GL873530            6743714   0 -  36342412 C
e colAng1.NW_012116021v1       297322   0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=5500.000000
s hg38.chr15_KI270850v1_alt    173471 1 +    430880 c
s panTro5.chr15              17978827 1 -  83230942 c
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204964 1 -  99763055 c
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272071 1 +    378907 c
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126418 1 + 121039945 c
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60339206 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65243164 1 + 171882078 c
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5323194 1 -   6271500 c
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1794943 1 -   1987038 C
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818765 1 +  24206276 c
i chlSab2.chr29             C 0 C 0
s canFam3.chr30                 30753 1 -  40214260 C
i canFam3.chr30             I 5 C 0
e micMur3.chr3                 904800 289 - 119751181 I
e proCoq1.NW_012149419v1       628684 2 -   2566024 I
e aotNan1.NW_018511953v1       717651 18 -   3745603 I
e mm10.chr9                  55157078 0 + 124595110 C
e calJac3.chrY                 186757 0 -   2853901 C
e dasNov3.JH569975              14198 0 -   2180720 C
e cebCap1.NW_016107979v1       272726 15 -   1024465 I
e otoGar3.GL873530            6743714 0 -  36342412 C
e colAng1.NW_012116021v1       297322 0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=21294.000000
s hg38.chr15_KI270850v1_alt    173472 3 +    430880 TTT
s panTro5.chr15              17978828 3 -  83230942 TTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204965 3 -  99763055 TTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272072 3 +    378907 TTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126419 3 + 121039945 TTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60339207 3 + 169600520 TTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65243165 3 + 171882078 TTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5323195 3 -   6271500 TTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1794944 3 -   1987038 TTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818766 3 +  24206276 TTT
i chlSab2.chr29             C 0 C 0
s proCoq1.NW_012149419v1       628686 3 -   2566024 TTT
i proCoq1.NW_012149419v1    I 2 C 0
s canFam3.chr30                 30754 3 -  40214260 TTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              14198 3 -   2180720 TTT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 904800 289 - 119751181 I
e aotNan1.NW_018511953v1       717651 18 -   3745603 I
e mm10.chr9                  55157078 0 + 124595110 C
e calJac3.chrY                 186757 0 -   2853901 C
e cebCap1.NW_016107979v1       272726 15 -   1024465 I
e otoGar3.GL873530            6743714 0 -  36342412 C
e colAng1.NW_012116021v1       297322 0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=53060.000000
s hg38.chr15_KI270850v1_alt    173475 7 +    430880 TTTTCTT
s panTro5.chr15              17978831 7 -  83230942 TTTTCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204968 7 -  99763055 TTTTCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272075 7 +    378907 TTTTCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126422 7 + 121039945 TTTTCTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60339210 7 + 169600520 TTTTCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65243168 7 + 171882078 TTTTCTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5323198 7 -   6271500 TTTTCTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1794947 7 -   1987038 TTTTCTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818769 7 +  24206276 TCTTCTT
i chlSab2.chr29             C 0 C 0
s proCoq1.NW_012149419v1       628689 7 -   2566024 TTTTCTT
i proCoq1.NW_012149419v1    C 0 C 0
s mm10.chr9                  55157078 7 + 124595110 TTTGCTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 30757 7 -  40214260 TTTCCTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              14201 7 -   2180720 TTTTCTT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 904800 289 - 119751181 I
e aotNan1.NW_018511953v1       717651 18 -   3745603 I
e calJac3.chrY                 186757 0 -   2853901 C
e cebCap1.NW_016107979v1       272726 15 -   1024465 I
e otoGar3.GL873530            6743714 0 -  36342412 C
e colAng1.NW_012116021v1       297322 0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=394231.000000
s hg38.chr15_KI270850v1_alt    173482 58 +    430880 CTAGGTACCAGCTTTTA--TTTATCAGATTGGTATAAATGTTAGAAAGCGTGCAATGAAA
s panTro5.chr15              17978838 58 -  83230942 CTAGGTACCAGCTTTTA--TTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAATGAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17204975 58 -  99763055 CTAGGTACCAGCTTTTA--TTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAATGAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272082 58 +    378907 CTGGGTACCAGCTTTTA--TTTATCAGATTGGTAAAAATGTTAGAAAGCGTGCAATGAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126429 58 + 121039945 CTGGGTACCAGCTTTTA--TTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAATGAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60339217 58 + 169600520 CTTGGTACCAGCTTTTA--TTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAATGAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65243175 58 + 171882078 CTAGGTACCAGCTTTTA--CTTATCAGATTGGTAAAAATACTAGAAAGTGTGCAATGAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5323205 58 -   6271500 CTAGGTACCAGCTTCTA--CTTATGAGATTGGTAAAAATGTTAGAAAGTGTGCAATGAAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1794954 58 -   1987038 CTTGGTACCAGCTTTTA--TTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAGTGAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818776 58 +  24206276 CTAGGTACCAGCTTTTA--CTTATCAGATTGGTAAAAATATTAGAAAGTGTGCAATGAAA
i chlSab2.chr29             C 0 C 0
s proCoq1.NW_012149419v1       628696 54 -   2566024 CTAGGTACCAGCAT------TTATCAGACTAGTAAAAATGTTAGCAAGTGTGCAATGAAG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6743714 54 -  36342412 CTAGGTACCAGCTT------TTATCAGATTGGAAAAAATGTTAGCAAGTGTGCAGTGAAG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55157085 51 + 124595110 -------TCAGCTTCCAGTTTTATCAGATGGGTAAAAATGTTAGCAC-TGGGTACTGAG-
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 30764 56 -  40214260 CCACGTAGGAGCTTTTA--TTTA--ACATTGGTAAAAATGTTAGCAAGTGTGCCGTGAAA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              14208 58 -   2180720 CTGCGTTCCAGTTTTTA--TTTATCAGATTTGTAAAAATGTTAGCAAGTATGCAATGAAA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 904800 289 - 119751181 I
e aotNan1.NW_018511953v1       717651 18 -   3745603 I
e calJac3.chrY                 186757  0 -   2853901 C
e cebCap1.NW_016107979v1       272726 15 -   1024465 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=320394.000000
s hg38.chr15_KI270850v1_alt    173540 38 +    430880 TGGGCATTTTCACAGTCGTGGCAGAAAGTATAATTATC
s panTro5.chr15              17978896 38 -  83230942 TGGGCATTCTCACAGTCGTGGCAGAAAGTATAATTATC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205033 38 -  99763055 TGGGCATTCTCACAGTCGTGGCAGAAAGTATAATTATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272140 38 +    378907 TGGGCATTTTCACAGTCGTGGCAGAAAGTATAATTATC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126487 38 + 121039945 TGGGCATTCTCACAGTCGTGGCAGAAAGTATAATTATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60339275 38 + 169600520 TGGGCATTCTCACAGTCATGGCAGAAAGTATAATTATC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65243233 38 + 171882078 TGTGCATTCTCACAGTCATGGCAGAAAGTATAATTATC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5323263 38 -   6271500 TGGGCATTCTCACCGTCATGGCAGAAAGTATAGTTATC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1795012 38 -   1987038 TGGGCATTCTCACAGTCATGGCAGAAAGTATAATTATC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818834 38 +  24206276 TGGGCATTCTCACAGTCGTGGCAGAAAGTATAATTATC
i chlSab2.chr29             C 0 C 0
s micMur3.chr3                 905089 38 - 119751181 TGGGCATTCTCACAGTCATGGCAGAAAGTATAATTATC
i micMur3.chr3              I 289 I 117
s proCoq1.NW_012149419v1       628750 38 -   2566024 TGGGCATTCTCACAGCCGTGGCAGAAAGTATAATTATC
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6743768 37 -  36342412 TGGGTGTTCTCATAGCCATGGCAGGAAGTATACTTTT-
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55157136 36 + 124595110 TGAG-ATCACCACAGTAA-GACAGGAGGTATAGTTATC
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 30820 31 -  40214260 TGGGTGTTCTCACAGTCATGACAGAAAATAT-------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              14266 38 -   2180720 TGGGCATTTTCACAGTCATGGCAGAAAATATAAACATC
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       717651 18 -   3745603 I
e calJac3.chrY                 186757  0 -   2853901 C
e cebCap1.NW_016107979v1       272726 15 -   1024465 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=159602.000000
s hg38.chr15_KI270850v1_alt    173578 26 +    430880 TTTGACTTTCTAGAAAGCAGTCTGGC
s panTro5.chr15              17978934 25 -  83230942 -TTGACTTTCTAGAAAGCATTTTGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205071 25 -  99763055 -TTGACTTTCTAGAAAGCATTTTGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272178 26 +    378907 TTTGACTTTCTAGAAAGCAGTCTGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126525 26 + 121039945 TTTGACTTTCTAGAAAGCAGTCTGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60339313 26 + 169600520 TTTGACTTTCTAGAAAGTAGTTTGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65243271 26 + 171882078 TTTGACTTTCCAGAAAGCAGTTTGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5323301 26 -   6271500 TTTGACTTTCTAAAAAGCAGTCTGGC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1795050 26 -   1987038 TTTGACTTTCTAGAAAGTAGTTTGGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818872 26 +  24206276 TTTGGCTTTCCAGAAAGCAGTTTGGC
i chlSab2.chr29             C 0 C 0
s proCoq1.NW_012149419v1       628788 26 -   2566024 TATGACTTTTTAGAAAGTGATTTGGC
i proCoq1.NW_012149419v1    C 0 I 17
s otoGar3.GL873530            6743805 26 -  36342412 TATGACTTTTTAGAAAGTGATTTGTC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55157172 14 + 124595110 ------------TATAGCCCTCTGAC
i mm10.chr9                 C 0 I 7
s canFam3.chr30                 30851 23 -  40214260 ---GACCCTCTAGAAAACAATTTGGT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              14304 26 -   2180720 AGTGACCCTCTAGAAAGCAATttggc
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 905127 117 - 119751181 I
e aotNan1.NW_018511953v1       717651 18 -   3745603 I
e calJac3.chrY                 186757  0 -   2853901 C
e cebCap1.NW_016107979v1       272726 15 -   1024465 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=49865.000000
s hg38.chr15_KI270850v1_alt    173604 20 +    430880 ATTCTAGAAACTTGCCTAAC
s panTro5.chr15              17978959 20 -  83230942 TTTCTAGAAACTTGCCTAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205096 20 -  99763055 TTTCTAGAAACTTGCCTAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272204 20 +    378907 ATTCTAGAAACTTGCCTAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126551 19 + 121039945 A-TCTAGAAACTTGCCTAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60339339 20 + 169600520 TTTCTAGAAACTTGCCTGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65243297 20 + 171882078 TTTCTAGAAACTTGCCTAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5323327 20 -   6271500 ATTCTAGAAACTTGCCTAAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1795076 20 -   1987038 TTTCTAGAAACTTGCCTGAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818898 19 +  24206276 -TTCTAGAAACTTGCCTAAC
i chlSab2.chr29             C 0 C 0
s otoGar3.GL873530            6743831 13 -  36342412 --TCCATATACTGGC-----
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55157193 19 + 124595110 GTTCTCGCAGAACGCTGAG-
i mm10.chr9                 I 7 C 0
s canFam3.chr30                 30874  9 -  40214260 -----------TTGCATAAT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              14330 10 -   2180720 -ttcatgtagt---------
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 905127 117 - 119751181 I
e proCoq1.NW_012149419v1       628814 17 -   2566024 I
e aotNan1.NW_018511953v1       717651 18 -   3745603 I
e calJac3.chrY                 186757  0 -   2853901 C
e cebCap1.NW_016107979v1       272726 15 -   1024465 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=19140.000000
s hg38.chr15_KI270850v1_alt    173624 2 +    430880 CT
s panTro5.chr15              17978979 2 -  83230942 CT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205116 2 -  99763055 CT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272224 2 +    378907 CT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126570 2 + 121039945 CT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60339359 2 + 169600520 CT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65243317 2 + 171882078 CT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5323347 2 -   6271500 CT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1795096 2 -   1987038 CT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818917 2 +  24206276 CT
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186757 2 -   2853901 CT
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       272741 2 -   1024465 CT
i cebCap1.NW_016107979v1    I 15 C 0
s aotNan1.NW_018511953v1       717669 2 -   3745603 CT
i aotNan1.NW_018511953v1    I 18 C 0
s mm10.chr9                  55157212 1 + 124595110 -T
i mm10.chr9                 C 0 I 1
s canFam3.chr30                 30883 2 -  40214260 CC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              14340 2 -   2180720 ct
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 905127 117 - 119751181 I
e proCoq1.NW_012149419v1       628814 17 -   2566024 I
e otoGar3.GL873530            6743844 0 -  36342412 C
e colAng1.NW_012116021v1       297322 0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=554916.000000
s hg38.chr15_KI270850v1_alt    173626 71 +    430880 CTTCCCATTTAGGCAAGATGAATTCTCACTACCCGTAGGTGGCCAACCTTGTCCTTGTGATTCCGTATCTT
s panTro5.chr15              17978981 71 -  83230942 CTTCCCATTTAGGCAAGATGGATTCTGACTACCCCTAGGTGGCCAACCTTGTCCCTGTGATTCCATCTCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205118 71 -  99763055 CTTCCCATTTAGGCAAGATGGATTCTGACTACCCCTAGGTGGCCAGCCTTGTCCCTGTGATTCCATATCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272226 71 +    378907 CTTCCCATTTAGGCAAGATGAATTCTCACTACCCGTAGGTGGCCAACCTTGTCCTTGTGATTCCGTATCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126572 71 + 121039945 CTTCCCATTTAGGCAAGATGAATTCTGACTACCCCTAGGTGGCCATCCTTGTCCCTGTGATTCCATATCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60339361 71 + 169600520 CCCCCTGTTTAGGCAGGATGAATTCTGACTACCCCAAGGTGGCCAGCCTTGTCCCTGTGATTCCAGATCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65243319 71 + 171882078 CTTCCCATTTAGGCAAGATGAATTCTGACTACCCCAAGGTGGCCCATCTTGTCCTTGTGGTTCCATATCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5323349 71 -   6271500 CTTCCCATTTAGGCAAGATGAATTCTGACCACCCCTCAGTGGCCAATCTTGTCCCTGTGATTCCATATCTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1795098 71 -   1987038 CTCCCTGTTTAGACAGTATGAATTCTGACTACCCCAAGGTGGCCAGCCTTGTCCCTGTGATTCCAGATCTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818919 71 +  24206276 CTTCCCATTTAGGCAAGATGAATTCTGACTACCCCAAGGTGGCCAATCTCGTCCCTGTTGTTCCATATCTC
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186759 70 -   2853901 CTTCCTGTTTAGGCAGGATGAATTCTGATTACCCC-AAGTGGCTAGCCTTGTCCCTGTGATTCCAGATCTC
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       272743 70 -   1024465 CTTCCTGTTTAGTCAGGATGAATTCTGACTACCCC-AAGTGGCTAGGCTTGTCCCTGTGATTCCAGATCTC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       717671 70 -   3745603 CTTCCTGTTTAGGCAAGATGAATTTTGACTACCCC-AAGTGGCTAGCCTTGTCCCTGTGATTCCAGATCTC
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       628831 71 -   2566024 CTACTGATTTAGGCAGGATGAATGCTGACTGCCCCAGGTGGGCCAACATTATCCTTGTGACTCCAGGTGTC
i proCoq1.NW_012149419v1    I 17 C 0
s otoGar3.GL873530            6743844 64 -  36342412 -------TCTACGCCTGATGTATATTGACTACCCCAGATAGGCCAACATTATCCTTGAGACTCCAGGTCTC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55157214 43 + 124595110 -CTCCACACTAGCCAGAAT---------TTACCT----GTGACCGACC--------------CCAACTGTC
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 30885 66 -  40214260 CTCTCTGTTT-GGAAAGATAAAT----ACTATCTCAGGGTGGCCAACTTTGTCCTTAAGACTCTAGAGCAT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              14342 70 -   2180720 gtctctattt-gacaagatgaatgatggctgccccaggctggccaacattgtccttgtgattctggatctc
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 905127 117 - 119751181 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=827249.000000
s hg38.chr15_KI270850v1_alt    173697 78 +    430880 CCAGAAAGAGAG--GTCT-------------------AGTCTCAGGGAAAACCCAGATTTTCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATG
s panTro5.chr15              17979052 78 -  83230942 CCAAAAGGAGAG--GTCT-------------------AGTCTCAGTGAAAACCCAGGTTTTCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205189 78 -  99763055 CCAAAAGGAGAG--GTCT-------------------AGTCTCAGTGAAAACCCAGGTTTTCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272297 78 +    378907 CCAGAAAGAGAG--GTCT-------------------AGTCTCAGGGAAAACCCAGATTTTCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126643 78 + 121039945 CCAGAAAGAGAG--GTCT-------------------AGTCTCAGTGAAAACCCAGATTTTCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60339432 78 + 169600520 CCAGAAAGAGAG--GTCT-------------------AGTCTCAGGGAAAACCCAGATTTTCTTGGCTTAGCTCACCTGACAGCTCATCACTGGAAATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65243390 78 + 171882078 CCAGAAAGAGAG--GTCT-------------------AGTCTCAGGGAAAACTCAGATTTGCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5323420 78 -   6271500 CCAGAAAGAGAG--GTCT-------------------AGTCTCAGGGAAAACCCAGATTTGCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1795169 78 -   1987038 CCAGAAAGAGAA--GTCT-------------------AGTCTCAGGGAAAACCCAGATTTGCTTGGCTTAGCTCACCTGACAGCTAATCACTGGAAATG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3818990 78 +  24206276 CCAGAAAGAGAG--GTCT-------------------AGTCTCAGGGAAAACTCAGATTTGCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATG
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186829 78 -   2853901 CTAGAAAGAGAG--GTCT-------------------AGCCTTAGGGAAAACTCAGATTTTCTTGGTTTAGCCCACCTCATAGCTAATCTCTGGAAATG
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       272813 72 -   1024465 CTAGAAAGAG---------------------------AGCCTTAGGGAAAACTCAGATTTTCTTTGTTTAGCCCACCTGATAGCTAATCTCTGGAAATG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       717741 78 -   3745603 CTAGAAAGAGAG--GTCT-------------------AGCCTTAGGGAAAACTCAGATTTTCTTGGTTTAGCCCACCTGATAGCTAATCTCTGGAAATG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 905244 78 - 119751181 CCAGAAAGAGAG--CTCT-------------------AGCCTCAGGAAAGACACAGTTTTTCCTGGCTTGGCCCACCTGGCAGCTAACCACTGGGAATG
i micMur3.chr3              I 117 C 0
s proCoq1.NW_012149419v1       628902 78 -   2566024 CCAGAAAGAGAG--CTCT-------------------AGCCTCAGGAAAGACACAGATTTTCCTGGCTTAGCCCACCTGACAGCTAACCACTGGGAATG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6743908 72 -  36342412 CCAGAAAGAGAGCTCTCT-------------------AGCCTCAAGAAAGGCCTGAATTTTCCTGGCTTAGTCCACCTGACAGATAA--------GGTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55157257 67 + 124595110 CCACAACAGGAC-------------------------AGTCAGAGAGAAGAC-------TTTGTGGCTCCCCCCACCTGAAAGCTCATTATTGGGAATG
i mm10.chr9                 C 0 I 362
s canFam3.chr30                 30951 78 -  40214260 CCAGAAGGTGAA--TTTT-------------------AGTTCCAGAGAAGACCTCGATTTGTCTCACTTAGCCCATCTGACAGCTAATCACTGGGAGTA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              14412 97 -   2180720 ctagaaagaggg--ctctttccagatatttccagcaaaagcttacagaatattcaaatttgcttggtttgagccttttgagagctaattactgggagtg
i dasNov3.JH569975          C 0 C 0
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=161585.000000
s hg38.chr15_KI270850v1_alt    173775 18 +    430880 AGGTGGGCCGGTA--GAGTC
s panTro5.chr15              17979130 18 -  83230942 GGGTGGGCCAGTA--GAGTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205267 18 -  99763055 GGGTGGGCCAGTA--GAGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272375 18 +    378907 AGGTGGGCCGGTA--GAGTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126721 18 + 121039945 GGGTGGGCCGGTA--GAGTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60339510 18 + 169600520 GGGTGGGCTGATA--GAGTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65243468 18 + 171882078 GGGTGGGCTGGTA--GACTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5323498 18 -   6271500 GGGTGGGCTGGTC--GAGTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1795247 18 -   1987038 GGGTGGGCTGGTA--GAGTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3819068 18 +  24206276 GGGTGGGCTGGTA--GACTC
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186907 18 -   2853901 CGGTATGCTGGTA--GAGTC
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       272885 18 -   1024465 GGGTATGCTGGTA--GAGTC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       717819 18 -   3745603 GGGTATGCTGGTA--GAGTC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 905322 18 - 119751181 GGGTGGGCTGGTA--GAGTC
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       628980 18 -   2566024 GGGTGGGCTGGTA--GCATC
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6743980 16 -  36342412 GAGTGGGCTGTCA--G--TC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 31029 18 -  40214260 GGATGGGCTCATA--GAGAC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              14509 20 -   2180720 ggttagaatgatatggagtt
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55157324 362 + 124595110 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=287889.000000
s hg38.chr15_KI270850v1_alt    173793 26 +    430880 CTTTGGTCAGGTTTT-GTGTCAAGAGA
s panTro5.chr15              17979148 26 -  83230942 CTTTGGTTAGGTTTT-GTGTCAAGAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205285 26 -  99763055 CTTTGGTTAGGTTTT-GTGTCAAGAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272393 26 +    378907 CTTTGGTCAGGTTTT-GTGTCAAGAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126739 26 + 121039945 CTTTGGTCAGGTTTT-GTGTCAAGAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60339528 26 + 169600520 CTTTGGTCAGGTTTT-GTGTTGAGACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65243486 26 + 171882078 CTTTGGTCAGGTTTT-GTGTCAAGAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5323516 26 -   6271500 CTTTGGTCAGGTTTT-GTGTCAAGAGA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1795265 26 -   1987038 CTTTGGTCAGGTTTT-GTGTTGAGACA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3819086 26 +  24206276 CTTTGGTCAGGTTTT-GTGTCAAGAGA
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186925 26 -   2853901 CTTTGGTCAGATTTT-GTGTCAAGAGA
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       272903 26 -   1024465 CTTTGGTCAGATTTT-GTGTCAAGAGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       717837 26 -   3745603 CTTTGGTCAGATTTT-GTGTCAAGAGA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 905340 26 - 119751181 CTTCTGTCAAGTTTT-ATGTCAaggga
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       628998 26 -   2566024 CTTTGGTCAGGTTTT-ATGTCAAGGGA
i proCoq1.NW_012149419v1    C 0 I 12
s otoGar3.GL873530            6743996 27 -  36342412 TTTTGGTCAGGTGTTAATGTCATGGGA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55157686 22 + 124595110 aTTTGGTCAGGTTTT-GTGTCAA----
i mm10.chr9                 I 362 C 0
s canFam3.chr30                 31047 26 -  40214260 CTGTGCCCAAGTTTT-GGGTCAAGGGA
i canFam3.chr30             C 0 I 2
s dasNov3.JH569975              14529 25 -   2180720 ctttgaccaagttct-gggtcacAGA-
i dasNov3.JH569975          C 0 C 0
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=38448.000000
s hg38.chr15_KI270850v1_alt    173819 8 +    430880 GGAATGTG
s panTro5.chr15              17979174 8 -  83230942 GGGATGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205311 8 -  99763055 GGGATGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272419 8 +    378907 GGGATGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126765 8 + 121039945 GGGATGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60339554 6 + 169600520 GAG--GTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65243512 8 + 171882078 AGGATGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5323542 8 -   6271500 GGGATGTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1795291 6 -   1987038 GAG--GTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3819112 8 +  24206276 AGGATGTG
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186951 8 -   2853901 GGGAGGTG
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       272929 8 -   1024465 GGGAGGTG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       717863 8 -   3745603 GGGAGGTG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 905366 8 - 119751181 gggaggga
i micMur3.chr3              C 0 I 8
s otoGar3.GL873530            6744023 8 -  36342412 GGGAAGGA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 31075 6 -  40214260 GAGATG--
i canFam3.chr30             I 2 C 0
s dasNov3.JH569975              14554 8 -   2180720 GGGAAGGA
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       629024 12 -   2566024 I
e mm10.chr9                  55157708 0 + 124595110 C
e colAng1.NW_012116021v1       297322 0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=1636848.000000
s hg38.chr15_KI270850v1_alt    173827 172 +    430880 GAAAGATGGGAGGGAGGTAGCAAAACTGGCCTCAATGGAACTATG-TAAGTTAACGTAGAATGACAAAGGAA------------TG-TTTCTTCCAGGGAAGAAATTCTAGGGA-------AGGAA-GAAAGTGGAGGGGAAGGcagcagttctcaaagtttt--gaggtcaggattcctttacact-cttaaaagt
s panTro5.chr15              17979182 172 -  83230942 GAAAGATGGGAGCGAGTTAGCAAAACTGGCCTCAATGGAACTATG-TAAGTTAACGTAGAATGGCAAAGGAA------------TG-TTTCTTCCAAGGAAGAAATTCTAGGGA-------AGGAA-GAAAGCGGAGGGGAAGGcagcagttctcaaagtttt--ggggtcaggattcttttacact-cttaaaagt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205319 172 -  99763055 GAAAGATGGGAGAGAGTTAGCAAAACTGGCCTCAATGGAACTATG-TAAGTTAACGTAGAATGGCAAAGGAA------------TG-TTTCTTCCAAGGAAGAAATTCTAGGGA-------AGGAA-GAAAGTGGAGGGGAAGGcagcagttctcaaagtttt--ggggtcaggattcttttacact-cttaaaagt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272427 172 +    378907 GAAAGATGGGAGGGAGGTAGCAAAACTGGCCTCAGTGGAACTATG-TAAGTTAACATAGAATGGCAAAGGAA------------TG-TTTCTTCCAAGGAAGAAATTCTAGGGA-------AGGAA-GAAAGTGGAGGGGAAGGcagcagttctccaagtttt--ggggtcaggattcctttacact-cttaaaagt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126773 153 + 121039945 GAAAGATGGGAGAAAGATAGCAAAACTGGCCTCAATGGAACTATG-TAACTTAACATAGAATGGCAAAGGAA------------TA-TTCT-------------ATTCTAGGGA-------AGGAA-GAAAGTGGAGGGGAAGGcagcagttctcaaagtttt--ggggtcaggattcctttacact-ct------t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60339560 173 + 169600520 GGAAGATGGGATGGAGGTAGCAAAACTGGCCTCAATGGAACTATG-TAAGTTAATATAGAATGGCAAAGGGA------------TG-TTTCTTCCAAGAAAGAAATTCTaggga-------agcaaggaaagtggaagggaaggcagcagttctcaaagtttt--ggggtcaggattcctttatact-cttaaaaat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65243520 171 + 171882078 GAAAGACGGGAGAGAGGTAGCAAAACTGGCCTCAATTGAACTAAA-TAAGTTAACGTAGAATGGCAAAGGAA------------TG-TTT-TTCCAAGGAAGAAATTCAAGGGA-------AGGAA-GAAAGTGGAGGGGAAGAcagcagttctcaaagtttt--ggggtcaggatacctttacact-cttaaaaat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5323550 172 -   6271500 GAAAGATGGGAGAGAAGTAGCAAAACTGGCCTCAATGGAACTAAG-TAAGTTAACATAGAATGACAAAGGAA------------TA-TTTCTTCCAAGGAAGAAATTCTAGGGA-------AGGAA-GAAAGTGGAGGGGAAGGcagcagttctcaaagtttt--gggatcaggattccttcacact-cgtaaaaat
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1795297 173 -   1987038 GGAAGATGGAATGGAGGTAGCAAAACTGGCCTCAATGGAACTATG-TAAGTTAATATAGAATGGCAAAGGGA------------TG-TTTCTTCCAAGGAAGAAATTCTaggga-------agcaaggaaagtggaagggaaggcagcagttctcaaagtttt--ggggtcaggattcctttatact-cttaaaaat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3819120 171 +  24206276 AAACGACGGGAGAGAGGTAGCAAAACTGGCCTCAATGGAACTAAG-TAAGTTAACGTAGAATGGCAAAGGAA------------TG-TTT-TTCCAAGGAAGAAATTCAAGGGA-------AGGAA-GAAAGTGGAGGGGAAGgtagcagttctcaaagtttt--ggggtcaggattcctttacact-cttaaaaat
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 186959 173 -   2853901 GAAGGATGGGAGGGAGGTAGCAAAACTGGCCTCAGTGGAACTATA-TAAGTTAATATAGAATGGCAAAGGGA------------TG-TTTCTTCCATGGAAGAAATACTAGGGA-------AGGAAGGAAAGTGGAGGGGAAGGcagaagttctcaaactttt--agtgtctggactcctttacact-cttaaaaat
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       272937 173 -   1024465 GAAGGATGGGAGGGAGGTAGCAAAACTGGCCTCAATGGAACTGTA-TAAATTAATATAAAATGGCAAAGGGA------------TA-TTTCTTCCACGGAAGAAATACTaggga-------aggaaggaaagtggaggggaaggcagaagttcttaaactttt--agtgtctggactcctttacact-cttaaaaat
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       717871 174 -   3745603 GAAGGATGGGAGGGAGGTAGCAAAACTGGCCTCAGTGGAACTATATTAAGTTAATATAGAATGGCAAAGGGA------------TC-TTTCTTCCACGGAATAAATACTaggga-------aggaaggaaagtggaggggaaggcagaagttctcaaactttt--agtgtctggacttctttacact-cttaaaaat
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 905382 168 - 119751181 gaaagaTGGGATGCAGGTAGCAAA---ACTGTCAATGCAGCT--A-GAGGTTAATATAGAATGATAAAGGAA------------TGTTTTCTTCCAAGGAAGAAATTCTAGGTG-------TGGGG-GAAGGTGAA-GGGAAGGcagcagttctcaaagtttt-agggggcagggctcctttacact-cttaaagat
i micMur3.chr3              I 8 C 0
s proCoq1.NW_012149419v1       629036 173 -   2566024 GAAAGATGGGATGAAGGTAGCAGAACTACTGTCAGTGCAGCTACA-AAGGTTAATATAGAATGGTGAAGGGG------------TG-TTTCTTCCAAGGAAGAAATTCTAGATG-------TGGGG-GAAGGTGAAGGGGAAGGcagcagttctcaaagtttt-gggggtcagggcctctttacact-catagagat
i proCoq1.NW_012149419v1    I 12 C 0
s otoGar3.GL873530            6744031 171 -  36342412 AAAAGATGGGATGGAGGTAGCAAAACTAGTCCCAGTGGAGCTACA-AAGGTTCGTAAAGAATGATAAAAGGA------------TG-TTTCTTCCAAGGAAGAAATTCTAGTTG-------AGGGGAGAAAATAGAGGGAAAGGcagcagttcgcaaagtttt-tgaagtcagggttcctttacact-c---aaaat
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55157708 173 + 124595110 -------GGGAGGGAGGTATCAAAACCAGCCCCAAAGGAAC-ATG-TAGGTTAATGGAGAATGGAGAAAAGGAGGTGTTTTTTTTT-TTTTTTCCCAGGAGGAAAGGCTAGGGGATTTGGCAGGAGAGAAGTTGGAA-----------Agttcttaatatttttgggagtcaggacttacttaaact-cttaaa--t
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 31081 165 -  40214260 GGCAGATGGGAACAAGTTGGGGAAACGAGTTCCAGTAGAACCACA-TAGGTTAGTAGAGAGTGGTG-AGGGA------------TG-TTTCTTGTAAGGAAGGGCT-----GGG-------CTGCA-GGAGGTGT-GGAGAAGGCAGCTATTCTAAAACTTCT-TGGAGTTA--ACACTTTCATACTGTTTAAAAGT
i canFam3.chr30             C 0 I 4788
s dasNov3.JH569975              14562 173 -   2180720 GGAAGCTGGGAGGGAGGTAGGAAGACCAGTTCCTATGGAAC-ACG-TGGGTTAACATAGAATTGTGAAGACA------------TG-TTTCTCCCAAGGAAGAAATTCTAGGTG-------AAAAAAAAAAAAAGGAGTTGGGGcagcagttctcaacatttt-tggtgtcaggattcctaaacttt-cttaaagat
i dasNov3.JH569975          C 0 C 0
e colAng1.NW_012116021v1       297322   0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=264898.000000
s hg38.chr15_KI270850v1_alt    173999 24 +    430880 atattgaggg-cccaaggagctttt
s panTro5.chr15              17979354 24 -  83230942 atattgaggg-cccaaggagctttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205491 24 -  99763055 atattgaggg-cccaaggagctttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272599 24 +    378907 atattgaggg-cccaaggagctttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126926 24 + 121039945 atattgaggg-cccaaggagctttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60339733 24 + 169600520 atattgaggg-cccaaggagctttg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65243691 24 + 171882078 atattgaggg-cccaaggagctttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5323722 24 -   6271500 gtattgatgg-cccaaggagctttt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1795470 24 -   1987038 atattgaggg-cccaaggagctttg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3819291 24 +  24206276 atattgaggg-cccaaggagctttt
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 187132 24 -   2853901 atattgaggg-cccaacgagctttt
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       273110 24 -   1024465 atattgaggg-cccaaggagctttt
i cebCap1.NW_016107979v1    C 0 I 3695
s aotNan1.NW_018511953v1       718045 24 -   3745603 atattgaggg-cccaaggagctttt
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 905550 24 - 119751181 attttgaggg-cccacggagccttt
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       629209 24 -   2566024 attttgaggt-cccaaggagccttt
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6744202 24 -  36342412 atattgaggt-ttcaaggagccttt
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55157881 24 + 124595110 atatcacagg-tctaaggaaacttc
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              14735 25 -   2180720 gtaatgaggaccccaatgagctttt
i dasNov3.JH569975          C 0 C 0
e canFam3.chr30                 31246 4788 -  40214260 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=374462.000000
s hg38.chr15_KI270850v1_alt    174023 43 +    430880 ctgtatataggttatatctattggtatttatcactaaaaatta
s panTro5.chr15              17979378 43 -  83230942 gtgtatgtaggttatatctattggtatttatcactagaaatta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205515 43 -  99763055 gtgtatgtaggttatatctattggtatttatcactagaaatta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272623 43 +    378907 gtgtatgtaggttatatctattggtatttatcactagaaatta
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126950 43 + 121039945 ctgtatataggttatatctattggtatttatcattagaaatta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60339757 43 + 169600520 gtgtatgtagggtatatcaattggtatttatcactagaaatta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65243715 43 + 171882078 gtgtatgtaggtgatatctactggtatttatcactagaaatta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5323746 43 -   6271500 gtgtatgtaggttgtatctattggtatttatcactagaaatta
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1795494 43 -   1987038 gtgtatgtggggtatatcaattggtatttatcactagaaatta
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3819315 43 +  24206276 ctgtatgtaggtgatatctactggtatttatcactagaaatta
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 187156 43 -   2853901 gtttatgtaggatatatctactggtatttaccaccagaagtta
i calJac3.chrY              C 0 C 0
s aotNan1.NW_018511953v1       718069 43 -   3745603 gtttatgtaggatatatctattggtatttaccactagaagtta
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 905574 43 - 119751181 gtttatgtaggttatatctattgatatttatcattagaaatta
i micMur3.chr3              C 0 I 4907
s proCoq1.NW_012149419v1       629233 43 -   2566024 gtttatgtaggttatatctattgatatttatcattagaaatta
i proCoq1.NW_012149419v1    C 0 I 5870
s otoGar3.GL873530            6744226 32 -  36342412 gtttatataggttttatctgttgatatttatc-----------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55157905 42 + 124595110 atttttatcagctatacct-ttgatatttatcattaaaaatta
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              14760 39 -   2180720 gtttatgtaagttatgtctatcaatatttatta----gaatta
i dasNov3.JH569975          C 0 C 0
e canFam3.chr30                 31246 4788 -  40214260 I
e cebCap1.NW_016107979v1       273134 3695 -   1024465 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=103971.000000
s hg38.chr15_KI270850v1_alt    174066 18 +    430880 aatcagaaatacttaaaa
s panTro5.chr15              17979421 18 -  83230942 aatcagaaatacttaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205558 18 -  99763055 aatcagaaatacttaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272666 18 +    378907 aatcagaaatacttaaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102126993 18 + 121039945 aatcagaaatacttaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60339800 13 + 169600520 aatcaggaatatt-----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65243758 18 + 171882078 aatcagaaatattcaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5323789 18 -   6271500 aatcagaaatatttaaaa
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1795537 13 -   1987038 aatcaggaatatt-----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3819358 18 +  24206276 aatcagaaatattcaaaa
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 187199 18 -   2853901 aatcagaaatatttaaaa
i calJac3.chrY              C 0 I 4
s aotNan1.NW_018511953v1       718112 18 -   3745603 aatcagaaatatttaaaa
i aotNan1.NW_018511953v1    C 0 I 6612
s otoGar3.GL873530            6744258 17 -  36342412 -attagaaatatttagaa
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55157947 16 + 124595110 aaacag--atatttaaaa
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              14799 14 -   2180720 ----aaacattcttaaaa
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 905617 4907 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e canFam3.chr30                 31246 4788 -  40214260 I
e cebCap1.NW_016107979v1       273134 3695 -   1024465 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=797078.000000
s hg38.chr15_KI270850v1_alt    174084 224 +    430880 tattcctt-aa----aagctcac--caaattttgttatgaat---gcttttatgaaa---ag-----aaaatttctaaacccaa----------------a-----------gtagta------caatcttacaccttttgcaaatttcgttgatgtttgatatgtcatttgcacctgca---------------ttcaatttatt--------gtg---tgatatttgc------------ttg-aaaaaatgtgaacaaa--------------------------------------------------------------------------gaac-------aatctcatac--------------ag----------------------------------------ataGGCATTTTAGATCCTTATGGATAtttttt--------attt
s panTro5.chr15              17979439 302 -  83230942 tattcttt-aa----aagctcac--caaatattgttataaat---gcttttatgaaa---ag-----aaaatttctaaactcaa----------------a-----------gtagta------caatcttacatcttttgcaaatttctttgatgtttgatatgtcatttgtacctgca---------------ttcaatttatt--------gtg---tgatatttgc------------ttg-aaaaaatgtgaacaaaggctaatctcatagtttgatatgtcatttgtacctgcattcaatttattgtgtgatatttgcttgaaaaaatgtgaacaaaggctaatctcatac--------------ag----------------------------------------ataggcattttagatcattgtggatatttc-----------ttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205576 221 -  99763055 tattcttt-aa----aagctcac--caaatattgttataaat---gcttttatgaaa---ag-----aaaatttctaaactcaa----------------a-----------gtagta------caatcttacatcttttgcaaatttctttgatgtttgatatgtcatttgtacctgca---------------ttcaatttatt--------gtg---tgatatttgc------------ttg-aaaaaatgtgaacaaa--------------------------------------------------------------------------ggct-------aatctcatac--------------ag----------------------------------------ataGGCATTTTAGATCATTGTGGATAtttc-----------ttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272684 221 +    378907 tattcctt-aa----aagctcac--caaattttgttataaat---gcttttatgaaa---ag-----aaaatttctaaacccaa----------------a-----------gtagta------caatcttacaccttttgcaaatttcgttgatgtttgatatgtcatttgcacctgca---------------ttcaatttatt--------gtg---tgatatttgc------------ttg-aaaaaatgtgaacaaa--------------------------------------------------------------------------gaac-------aatctcatac--------------ag----------------------------------------ataGGCATTTTAGATCCTTATGGATATttc-----------ttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127011 218 + 121039945 tattcctt-aa----gagctcac--caaatattgttataaat---gcttttatgaaa---ag-----aaaatttctaaacccaa----------------a-----------gtagta------caatcttacatcttttgcaaatttctttgatgtttgatatgtcgtttgcacctgca---------------ttcaatttatt--------gtg---tgatatttgc------------ttg-aaaaaatgtgaacaaa--------------------------------------------------------------------------ggac-------agtctcatac--------------ag----------------------------------------ataGCCATTTTAGATCATTATGGAttttta--------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60339813 200 + 169600520 taTTCTTT-AA----AAGCTCAC--CATATA---TTAAAAAT---GCTTTTATGAAA----------AAAATTTCTAAGCCCAC----------------A-----------GCAGTA------T--------ATTTTTTGAAAATTTCTTTGATGTTTGGTATGTCATTTGTGTCTGC----------------TTCAATTTGTT--------GTG---TGATATTTGC------------TTG-AAAAAATGTGAACAAA--------------------------------------------------------------------------GGCC-------AATCTCATAC--------------AG----------------------------------------CTAGCCATTTTAGATCATTGTGGATA------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65243776 219 + 171882078 tattcttt-aa----aggttcac--caaatattgttataaat---gcttttatgaaa---ag-----aaaatttctaaacccaa----------------a-----------gtagta------caatctta-atcttttgcaaatttctttggtgtttggtatgtcatttgtgtctgca---------------ttcaatttatt--------gtg---tgatatttgc------------ttgaaaaaaatttgaacaaa--------------------------------------------------------------------------ggcc-------aatgtcatac--------------ag----------------------------------------ataGCCATTTTAGATCATTGTGGATAtttct-------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5323807 224 -   6271500 tattcttt-aa----cagctcac--caaatattgttataaat---gcttttatgaaa---ag-----aaaatttctaaacccaa----------------a-----------gtagta------caatcttatatcttttgcaaatttctttgatgtttgatgtgtcatttgtatctgca---------------ttcaatttatt--------gtg---tgatatttgc------------ttg-caaaaatgtgaagaca--------------------------------------------------------------------------ggcc-------agtctcatac--------------ag----------------------------------------ataGCCATTTTAGATCATTGTGGATATTTCTTATTT--------
i macNem1.NW_012011056v1    C 0 M 1529
s cerAty1.NW_012002657v1      1795550 200 -   1987038 tattcttt-aa----aagctcac--catatg---ttaaaaat---gcttttatgaaa----------aaaatttctaagcccac----------------a-----------gcagta------t--------attttttgaaaatttctttgatgtttggtatgtcatttgtgtctgc----------------atcaatttgtt--------gtg---tgatatttgc------------ttg-aaaaaatgtgaacaaa--------------------------------------------------------------------------ggcc-------aatctcatac--------------ag----------------------------------------ctaGCCATTTTAGATCATTGTGGATA------------------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3819376 220 +  24206276 tattcttt-aa----aggttcac--caaatattgttataaat---gcttttatgaaa---ag-----aaaatttctaaacccaa----------------a-----------gtagta------caatctta-atcttttgcaaatttctttggtgtttggtatgtcatttgtgtctgca---------------ttcaatttatt--------gtg---tgatatttgc------------ttgaaaaaaatttgaacaaa--------------------------------------------------------------------------ggcc-------agtgtcatac--------------ag----------------------------------------aTAGCCATTTTAGATCATTGTGGAtatttctt------------
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 187221 250 -   2853901 aagtcttt-aa----aaactcat--cacatattgttacaaat---gctttcatgaaa---cg-----acattttctaaaacaaa----------------a-----------atagaataggagcagtcttacattttttgcaaatttcattgatgtttggtctgtcatttgcttctgca---------------tttaat---tt--------gcg---tgatatttgc------------ttg----aagtgtaaacaaa--------------------------------------------------------------------------atcc-------aacctcatac--------------agata-cctggtt-------agaaaaattctagcatgttttaatagccattttaaataattacgggtattcc--------------
i calJac3.chrY              I 4 C 0
s otoGar3.GL873530            6744275 280 -  36342412 cattcattaaa----aaacttactacatatattattataaat---ggctttatgaag---agtaaccatattttctaaagtaaaagaattcagtgagagta-----------gtagga------cagtcttaacatttttgcagatctctttgatatttggtctgtcatcta---ctgca---------------ttcaatttgtt--------ttg---tgttttttgg------------ttg-aaataatgtaaacaaa--------------------------------------------------------------------------atcc-------agtctcccag--------------at--a-tctggttcaaaaaaaggaatatttta----------atagcagttttcgataactgtggatattccttgatactccatta
i otoGar3.GL873530          C 0 I 4
s mm10.chr9                  55157963 193 + 124595110 ---------------------------------------------------------------------cattaatA-----------------------A-----------CTAATA------C--------------TGCAAGTTTCTTTGATACTTGTTCTGTCATTTGCTTCTGCACTTTTACatatatacttaaatatatttatatgtatta---caatatatactaattctatgtattt-aaaatatatttttaaa--------------------------------------------------------------------------aaac-------atttttataGTATATGGATTGTAAAA----------------------------------------CTATATATTCTAAAAATTTTTGTTTGTT----------------
i mm10.chr9                 C 0 I 3
s dasNov3.JH569975              14813 263 -   2180720 tattcatt-aaaaataaacctat--tacatgctaatacaaataacatttttatgaaatataa-----atattttctaaaacaaa----------------aagttggagaatatggca------caattttatgttttttgcacatctctttaatatctggt---ccatttgcttctgca---------------ttcaatctgtt--------gtgatatgttgtgttc------------att-gaaatatgtgaagaaa--------------------------------------------------------------------------atcc-------agcctcatac--------------ag--atttttggttagaaaaaggagtatttta----------acagcctttttagataattcaggata------------------
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 905617 4907 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e canFam3.chr30                 31246 4788 -  40214260 I
e cebCap1.NW_016107979v1       273134 3695 -   1024465 I
e colAng1.NW_012116021v1       297322   0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=71427.000000
s hg38.chr15_KI270850v1_alt    174308 35 +    430880 --tttatttttttt-------tatttttgagatggggtctttct
s panTro5.chr15              17979741 35 -  83230942 --ttctttttcttt-------tttttttgagattgggtcttgct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205797 34 -  99763055 --ttctttttcttt-------t-tttttgagattgggtcttgct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272905 42 +    378907 --ttttttttttttaattttgtatttttgagatggggtctttct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127229 23 + 121039945 ---------------------tttttttgagatggggtcttgct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60340013 30 + 169600520 -------tttcttt-------ttttttcgagatggggtcttgcc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65243995 35 + 171882078 --ttttctttttct-------tttttttgagatggggttttgct
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1795750 30 -   1987038 -------tttcttt-------ttttttcgagatggggtcttgcc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3819596 34 +  24206276 ---tttctttttct-------tttttttgagatggggtcttgct
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 187471 31 -   2853901 ------cccccttt-------tttttttgaggtggggtgtcact
i calJac3.chrY              C 0 C 0
s otoGar3.GL873530            6744559 34 -  36342412 --ctaatctgtttg-------caactttga-atgaatcttttcc
i otoGar3.GL873530          I 4 C 0
s mm10.chr9                  55158159 35 + 124595110 --GCTTTTGTtttt-------gttttttgagacagggtttctct
i mm10.chr9                 I 3 C 0
s dasNov3.JH569975              15076 37 -   2180720 tatattttttgata-------ctccactaaaatttggtctgttt
i dasNov3.JH569975          C 0 I 5505
e micMur3.chr3                 905617 4907 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e canFam3.chr30                 31246 4788 -  40214260 I
e cebCap1.NW_016107979v1       273134 3695 -   1024465 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=6764.000000
s hg38.chr15_KI270850v1_alt    174343 2 +    430880 ct
s panTro5.chr15              17979776 2 -  83230942 ct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205831 2 -  99763055 ct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272947 2 +    378907 ct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127252 2 + 121039945 ct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60340043 2 + 169600520 ct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65244030 2 + 171882078 ct
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1795780 2 -   1987038 ct
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3819630 2 +  24206276 ct
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 187502 2 -   2853901 gt
i calJac3.chrY              C 0 C 0
s otoGar3.GL873530            6744593 2 -  36342412 cc
i otoGar3.GL873530          C 0 I 639
s mm10.chr9                  55158194 2 + 124595110 gt
i mm10.chr9                 C 0 C 0
e micMur3.chr3                 905617 4907 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e dasNov3.JH569975              15113 5505 -   2180720 I
e canFam3.chr30                 31246 4788 -  40214260 I
e cebCap1.NW_016107979v1       273134 3695 -   1024465 I
e colAng1.NW_012116021v1       297322 0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=221956.000000
s hg38.chr15_KI270850v1_alt    174345 67 +    430880 gtctcccaggctggaatgcagtgctatgatcacggctcactggagcctcattctctggggactcagg
s panTro5.chr15              17979778 67 -  83230942 gttgcccaggctggaatgcagtgctatgatcacggctcactggaccctcagtatctggggactcagg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205833 67 -  99763055 gttgcccaggctggaatgcagtgctatgatcacggctcactggaccctcagtatctggggactcagg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       272949 67 +    378907 gtctcccaggctggaatgcagtgctatgatcacggctcactggagcctcattctctggggactcagg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127254 67 + 121039945 gtctcccaggctggaatgcagtgctatgatcacagctcactggagcctcattctctggggaatcagg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60340045 67 + 169600520 gtcacccagcctggaatgcagtggtgtgatcatggctcactgcagcctcagtctccggggactcagg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65244032 67 + 171882078 gttgcccaggctggaatgcagtggtatggtcatggatcactggagcctcagtctctggggactcagg
i macFas5.chr7              C 0 I 77144
s cerAty1.NW_012002657v1      1795782 67 -   1987038 gtcgcccagcctggaatgcagtggtgtgatcacggctcactgcagcctcagtctccggggactcagg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29               3819632 67 +  24206276 gttgcccaggctagaatgcagtggtatggtcatggatcactggagcctcagtctctggggactcagg
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 187504 63 -   2853901 attgcccagactggagtacagtggtgtgatcacagctcactgcagccccagtctcttgggact----
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55158196 51 + 124595110 gtagccctgactg---tccaggaac----tcatagaccaggctggcctc---------gaactcaga
i mm10.chr9                 C 0 C 0
e micMur3.chr3                 905617 4907 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e dasNov3.JH569975              15113 5505 -   2180720 I
e canFam3.chr30                 31246 4788 -  40214260 I
e cebCap1.NW_016107979v1       273134 3695 -   1024465 I
e otoGar3.GL873530            6744595 639 -  36342412 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=199812.000000
s hg38.chr15_KI270850v1_alt    174412 74 +    430880 tgctcctcccacc-------tcagcctccagagtagctgggactacaggtgtgtactactccacctagc--t-------aattttttgta--
s panTro5.chr15              17979845 74 -  83230942 tgctcctcccacc-------tcagcctccagagtagctgggactacaggtgtatactaccccacctagc--t-------aattgtttgta--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205900 74 -  99763055 tgctcctcccacc-------tcagcctccagagtagctgggactacaggtgtatactaccccacctagc--t-------aattgtttgta--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273016 74 +    378907 tgctcctcccacc-------tcagcctccagagtagctgggactacaggtgtgtactactccacctagc--t-------aattttttgta--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127321 81 + 121039945 tgctcctcccaccccagcctccagcctccagagtagctgggacaacaggtgtgtactaccccacctagc--t-------aattttttgta--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60340112 74 + 169600520 tgatcctcccacc-------tcagcctccagagtagttgggactacaggtgtgtaccactacacctggc--t-------aattttttgta--
i rheMac8.chr7              C 0 I 3577
s macFas5.chr7              107334135 74 - 171882078 tgatccacccgcc-------ttggcctcccaaagtgctggaattataggcatgagccaccgcacctggTGGG-------AATTGCCTT----
i macFas5.chr7              n 77144 I 1
s cerAty1.NW_012002657v1      1795849 74 -   1987038 tgatcctcccacc-------tcagcctccagagtagttgggactacaggtgtgtaccactacacctggc--t-------aattttttgta--
i cerAty1.NW_012002657v1    C 0 I 3536
s chlSab2.chr29               3819699 74 +  24206276 tgatcctcccacc-------ttagcctccacagtagttgggactacaggtgtgtactaccacacctagc--t-------atttttttgta--
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 187567 36 -   2853901 ---------------------------------------------caggtgtgtgtcatcacatctggc--t-------aattttttgta--
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55158247 81 + 124595110 -aatttgcctgcc-------tctgcctctcaagt-gctgggattaaaggcgtgcgccactacgcttggc--CTAAAATGtattttatgtgta
i mm10.chr9                 C 0 C 0
e micMur3.chr3                 905617 4907 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e dasNov3.JH569975              15113 5505 -   2180720 I
e canFam3.chr30                 31246 4788 -  40214260 I
e cebCap1.NW_016107979v1       273134 3695 -   1024465 I
e otoGar3.GL873530            6744595 639 -  36342412 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=15696.000000
s hg38.chr15_KI270850v1_alt    174486 8 +    430880 ttttttgt
s panTro5.chr15              17979919 8 -  83230942 ttttttgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205974 8 -  99763055 ttttttgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273090 8 +    378907 ttttttgt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127402 8 + 121039945 ttttttgt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107334210 8 - 171882078 TCTTTCAA
i macFas5.chr7              I 1 C 0
s chlSab2.chr29               3819773 8 +  24206276 tttttcat
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 187603 6 -   2853901 --tttttt
i calJac3.chrY              C 0 C 0
s mm10.chr9                  55158328 8 + 124595110 tgttttgt
i mm10.chr9                 C 0 I 6645
e micMur3.chr3                 905617 4907 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e dasNov3.JH569975              15113 5505 -   2180720 I
e canFam3.chr30                 31246 4788 -  40214260 I
e cebCap1.NW_016107979v1       273134 3695 -   1024465 I
e otoGar3.GL873530            6744595 639 -  36342412 I
e colAng1.NW_012116021v1       297322 0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012002657v1      1795923 3536 -   1987038 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e rheMac8.chr7               60340186 3577 + 169600520 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=22956.000000
s hg38.chr15_KI270850v1_alt    174494 14 +    430880 agatacagggtttt
s panTro5.chr15              17979927 14 -  83230942 agagacagggtttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17205982 14 -  99763055 agagacagggtttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273098 14 +    378907 agagacagggtttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127410 14 + 121039945 agagacaaggtttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107334218 14 - 171882078 GGGACTGTAAATCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3819781 14 +  24206276 agagacagggtttt
i chlSab2.chr29             C 0 C 0
s calJac3.chrY                 187609 14 -   2853901 agagacaaggtttt
i calJac3.chrY              C 0 C 0
e micMur3.chr3                 905617 4907 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e dasNov3.JH569975              15113 5505 -   2180720 I
e canFam3.chr30                 31246 4788 -  40214260 I
e cebCap1.NW_016107979v1       273134 3695 -   1024465 I
e otoGar3.GL873530            6744595 639 -  36342412 I
e colAng1.NW_012116021v1       297322  0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012002657v1      1795923 3536 -   1987038 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e rheMac8.chr7               60340186 3577 + 169600520 I
e saiBol1.JH378276             485959 5918 -   3282555 I

a score=5321.000000
s hg38.chr15_KI270850v1_alt    174508 5 +    430880 gccat
s panTro5.chr15              17979941 5 -  83230942 gccat
i panTro5.chr15             C 0 I 3838
s panPan2.chr15              17205996 5 -  99763055 gccat
i panPan2.chr15             C 0 I 4097
s gorGor5.CYUI01015946v1       273112 5 +    378907 gccat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127424 5 + 121039945 gccat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107334232 5 - 171882078 GCAGT
i macFas5.chr7              C 0 I 9
s chlSab2.chr29               3819795 5 +  24206276 gccat
i chlSab2.chr29             C 0 I 51482
s calJac3.chrY                 187623 4 -   2853901 tcta-
i calJac3.chrY              C 0 I 4366
s saiBol1.JH378276             491877 4 -   3282555 TCAA-
i saiBol1.JH378276          I 5918 C 0
s canFam3.chr30                 36034 5 -  40214260 GCCAT
i canFam3.chr30             I 4788 C 0
s dasNov3.JH569975              20618 5 -   2180720 GCCAA
i dasNov3.JH569975          I 5505 C 0
e micMur3.chr3                 905617 4907 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e cebCap1.NW_016107979v1       273134 3695 -   1024465 I
e otoGar3.GL873530            6744595 639 -  36342412 I
e colAng1.NW_012116021v1       297322 0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012002657v1      1795923 3536 -   1987038 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e rheMac8.chr7               60340186 3577 + 169600520 I

a score=3652.000000
s hg38.chr15_KI270850v1_alt    174513 1 +    430880 A
s panTro5.chr15              17983784 1 -  83230942 A
i panTro5.chr15             I 3838 C 0
s panPan2.chr15              17210098 1 -  99763055 A
i panPan2.chr15             I 4097 C 0
s gorGor5.CYUI01015946v1       273117 1 +    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127429 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60343763 1 + 169600520 A
i rheMac8.chr7              I 3577 C 0
s macFas5.chr7              107334246 1 - 171882078 T
i macFas5.chr7              I 9 C 0
s cerAty1.NW_012002657v1      1799459 1 -   1987038 A
i cerAty1.NW_012002657v1    I 3536 C 0
s saiBol1.JH378276             491881 1 -   3282555 A
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       276829 1 -   1024465 A
i cebCap1.NW_016107979v1    I 3695 C 0
s canFam3.chr30                 36039 1 -  40214260 A
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              20623 1 -   2180720 A
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 905617 4907 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e calJac3.chrY                 187627 4366 -   2853901 I
e otoGar3.GL873530            6744595 639 -  36342412 I
e colAng1.NW_012116021v1       297322 0 +   4111199 C
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3819800 51482 +  24206276 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M

a score=7800.000000
s hg38.chr15_KI270850v1_alt    174514 1 +    430880 G
s panTro5.chr15              17983785 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17210099 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273118 1 +    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127430 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60343764 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107334247 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1799460 1 -   1987038 G
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012118866v1       716386 1 -    764599 G
i colAng1.NW_012118866v1    n 0 C 0
s saiBol1.JH378276             491882 1 -   3282555 G
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       276830 1 -   1024465 G
i cebCap1.NW_016107979v1    C 0 C 0
s canFam3.chr30                 36040 1 -  40214260 G
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              20624 1 -   2180720 G
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 905617 4907 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e calJac3.chrY                 187627 4366 -   2853901 I
e otoGar3.GL873530            6744595 639 -  36342412 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3819800 51482 +  24206276 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M

a score=5947.000000
s hg38.chr15_KI270850v1_alt    174515 1 +    430880 G
s panTro5.chr15              17983786 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17210100 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273119 1 +    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127431 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60343765 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107334248 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1799461 1 -   1987038 G
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012118866v1       716387 1 -    764599 G
i colAng1.NW_012118866v1    C 0 C 0
s saiBol1.JH378276             491883 1 -   3282555 A
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       276831 1 -   1024465 G
i cebCap1.NW_016107979v1    C 0 C 0
s micMur3.chr3                 910524 1 - 119751181 G
i micMur3.chr3              I 4907 C 0
s canFam3.chr30                 36041 1 -  40214260 G
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              20625 1 -   2180720 G
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e calJac3.chrY                 187627 4366 -   2853901 I
e otoGar3.GL873530            6744595 639 -  36342412 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29               3819800 51482 +  24206276 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M

a score=434356.000000
s hg38.chr15_KI270850v1_alt    174516 73 +    430880 TATTCAAATAGAAAGTTTTGTTGTTG-TTTTAGTATATAAAGAAATATAACTTTCCATGTTGAAAAAATTTTAA---
s panTro5.chr15              17983787 73 -  83230942 TATTCAAATAGGAAGTTTTGTTCTTG-TTTTAGTATATAAAGAAGTACAACTTTCCATGTTGGAAAAATTTTAA---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17210101 71 -  99763055 TATTCAAATAGGAAGTTTTGTTCTTG-TTTTAGTATATAAAGAAGTACAACTTTCCATGTTGGAAAAATTT--A---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273120 73 +    378907 TATTCAAATAGAAAGTTTTGTTTTTG-TTTTAGTATATAAAGAAATATAACTTTCCATGTTGAAAAAATTTTAA---
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127432 48 + 121039945 TATTCAAATAGAAAGTTTTGTTTTTG-TTTTAGTATAT-------------------------AAAAACTTTAA---
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60343766 74 + 169600520 TATCCAAATAGAAAGTTTTATTTTTGTTTTTAGTATATAAAGAAGTATAACTTTCTATGTTGCAAAAATTTTAC---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107334249 74 - 171882078 TATTCAAATAGAAAGTTTTGTTTTTATTTTTAGTATGTAAAGAAATGTAACTTTCCATGTTGGAAAAATTTTAA---
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1799462 74 -   1987038 TATCCAAATAGAAAGTTTTATTTTTGTTTTTAGTATATAAAGAAGTATAACTTTCTATGTTGCAAAAATTTTAC---
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21052207 74 -  24206276 TATTCAAATAGAAAGTTTTGTTTTTATTTTTAGTATGTAAAGAAATATAACTTTCCATGTTGGAAAAATTTTAA---
i chlSab2.chr29             n 51482 C 0
s colAng1.NW_012118866v1       716388 74 -    764599 TATTCAAATTAAAAGTTTTGTTTTTATTTTTAGTATGTAAAGAAATATAACTTTCCATGTTGGAAAAATTTTAA---
i colAng1.NW_012118866v1    C 0 M 450
s saiBol1.JH378276             491884 74 -   3282555 TATTCAAATACAAAGTTTTATTTTTGTTTTTAGTATTTAAAGAAATACAAGTTTCCATTTTGCACAAATTTTTA---
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       276832 74 -   1024465 TATTCAAATACAAAGTTTTATTTTTGTTTTTAGTATTTAAAGAAATACAAGTTTCCATTTTGCAAAAATTTTTA---
i cebCap1.NW_016107979v1    C 0 C 0
s micMur3.chr3                 910525 71 - 119751181 TATTCAAACAGAAAGTT---CTTTTGTTTTTAATATGTAAAGAAATGTAACTTTCCATCTTGTAAAAATTTTAA---
i micMur3.chr3              C 0 C 0
s canFam3.chr30                 36042 73 -  40214260 TACACAAAGAAAATGTTTTTTTTTTT-TTTCAATATATGAAGAAATATAACTTTCCATTTTACAGAATTTGGAA---
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              20626 67 -   2180720 TATTCAAGTAGAAAGTTTT--------GTTTAATATATAAATAAATGTGACTTTCCatttt--ataaattaaaaaaa
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e calJac3.chrY                 187627 4366 -   2853901 I
e otoGar3.GL873530            6744595 639 -  36342412 I
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M

a score=1150617.000000
s hg38.chr15_KI270850v1_alt    174589 221 +    430880 AAA-CCtttttt-t-aaattataaaactcataagcaaccattgt---tgagaaaattagtaaagtacagaaaa------aagaaaaaaattaaagtctcccataatttctttacctaatataaccactattgacagttgacatgatggccattttctaccagtatatg-t-ttt-ttctttgctggtaaaatacata-acccttacatatatgtttAAATAGTTGAGGTCGTATTCT
s panTro5.chr15              17983860 225 -  83230942 AAA-CCtttttt---aaattataaaactcataagcaaccattgt---tgagaaaattagtaaagtacagaaaagag-aaaagaaaaaaattaaagtctcccataatttatctacctaatataaccactattgacagttgacatgatggccattttctgccagtatata-t-ttt-ttctttgctagtaaaatacata-acccttatacatatgtttaaatagttgaggtcatattct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17210172 223 -  99763055 AAA-CCttttt----aaattataaaactcataagcaaccattgt---tgagaaaattagtaaagtacagaaaagag-aaaagaaaaaaattaaagtctcccataatttatctacctaatataaccactattgacagttgacatgatggccattttctgccagtatata---ttt-ttctttgctagtaaaatacata-acccttatacatatgtttaaatagttgaggtcatattct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273193 220 +    378907 AAA-CCtttttt---taattataaaactcataagcaaccattgt---tgagaaaattagtaaagtacagaaaa------aagaaaaaaattaaagtctcccataatttctttacctaatataaccactattgacagttgacatgatggccattttctaccggtgtatg-t-ttt-ttctttgctattaaaatacata-acccttacacatatgtttaaatagttgaggtcatattct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127480 224 + 121039945 AAA-CCtttttt---taattataaaactcataagcaaccattgt---tgagaaaattagtaaagtacagaaaagag-aaaagaaaaaaattaaagtctcccataatttctctacctaatataaccacta-tgacagttgacctgatggccattttctaccagtgtata-t-ttt-ttctttgctagtaaaatgcata-acccttatacatgtgtttaaatagttgaggtcatattct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60343840 215 + 169600520 AAA-Ctttttt------attataaaactcgtaagtaaccattgt---tgag-aaattagtaaa-tacagaaaggagaaaagaagacaaattaaagtatcccataatttctctacctaatatagccact-------gttgacatgatggctattttccaccaatatata-tatat-atttttgctagtaaaatacata-acccttatacatatgtttaaatagttgagatcataatct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107334323 224 - 171882078 AAA-CCCttttt---aaattataaaactcataagcaaccattgt---tgagaaaattagtaaagtacagaaa--agaaaaagaaaaaaattaaagtcttccgtaatttctctacctaatattgccactattgacagttgacatgatggccattttctaccagtatata-t-ttt-ttctttggtagcaaaatacata-tcccttatagatatgtttaaatagttgaggtcatattct
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1799536 219 -   1987038 AAA-Cttttttt-----attataaaactcgtaagtaaccattgt---tgagaaaattagtaaaatacagaaaagaaaaaagaaaacaaattaaagtatcccataatttctctacctaatatagccact-------gttgacatgatggctattttccaccaatatata-tatatattttttgctagtaaaatacata-acccttatacatatgtttaaatagttgagatcataatct
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21052281 224 -  24206276 AAA-CCtttttt---taattataaaactcataagcaaccattgt---tgagaaaattagtaaagtacagaaa--agaaaaagaaaaaaattaaagtcttccataatttctctacctaatattgccactattgacagttgacatgatggccattttctaccagtatata-t-ttt-ttctttggtagtaaaatacata-tcccttatagatatgtttaaatagttgaggtcatattct
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276             491958 224 -   3282555 AAA-CGttttttct-tgattataaaactc--gtgcaaccattgtaaaaaaaaaaatgagtaaactatagaaaggaaaaaagaaagaaaattaaagtctcccgtaatttctctacctagtacaaccact-------gttgacatgatggctgttttctaccagtatatatt-ttt-ttctttgctagtaaaatacatacacatttgtacatatgtttaaatagttgaggtcatattct
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       276906 223 -   1024465 AAACCtttttttct-tgattataaaactcatgtgcaaccattgt---gaagaaaatgagtaaactgtagaaaggaaaaaagaaagaaaattaaaatctcccataatttctctacctaacacaaccact-------gttgacatgatggctgttttctaccagtatata-t-ttt-ttctttgctagtaaaatacatacacctttatacatatgtttaaatagttgaggtcatattct
i cebCap1.NW_016107979v1    C 0 C 0
s micMur3.chr3                 910596 216 - 119751181 AAA-CCtttttctt-tgattataaaactcataataagccattgt----gagaaaactagtaaaatacagaaaagca-aaaagaagaaaataaaaatctcccatagttcctctatgtaatg--aacact-------gttgacatgatggctattgtctactagtatt---t-ttt-ttctttgctagtaaaatacatgtactcttatgcatatgtttaaatagttgaggtcatattct
i micMur3.chr3              C 0 I 779
s canFam3.chr30                 36115 202 -  40214260 -AA-TCTATTTTCTATGATTTTAAAACT---AAATGACTATTGT---GAGAGAACTTAGTTaa--------------aatgaagggaaatagaaattttggagaagatttctgcctaagataaccact-------gtagacatgatagctattttctatcagcat----t-ttt-ccccttgctaataaaatgtatagactctaatagatatgcttaaagagttgaggtcatattca
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              20693 203 -   2180720 aaa-CAttttct-t-tgatagtaaagtaaataagtgaccagtgt----gagaaaactagtaaaatatataaaagc--aaaagaagataataaaaatctcccataatttctctacctaatataactgct-------attgttatgatggctgttttctaccagtgttt--t-tct-tcctttgctagtaaaatacata--------------tgtttaaatagatgaagtcatattct
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e calJac3.chrY                 187627 4366 -   2853901 I
e otoGar3.GL873530            6744595 639 -  36342412 I
e colAng1.NW_012118866v1       716462 450 -    764599 M
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M

a score=24042.000000
s hg38.chr15_KI270850v1_alt    174810 5 +    430880 CCATA
s panTro5.chr15              17984085 5 -  83230942 ctata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17210395 5 -  99763055 ctata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273413 5 +    378907 ctata
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127704 5 + 121039945 ctata
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60344055 5 + 169600520 ctata
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107334547 5 - 171882078 ctata
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1799755 5 -   1987038 ctata
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21052505 5 -  24206276 ctata
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276             492182 5 -   3282555 atata
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       277129 5 -   1024465 atata
i cebCap1.NW_016107979v1    C 0 C 0
s canFam3.chr30                 36317 5 -  40214260 ataca
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              20896 5 -   2180720 atgta
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e calJac3.chrY                 187627 4366 -   2853901 I
e otoGar3.GL873530            6744595 639 -  36342412 I
e colAng1.NW_012118866v1       716462 450 -    764599 M
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M

a score=10351.000000
s hg38.chr15_KI270850v1_alt    174815 2 +    430880 GG
s panTro5.chr15              17984090 2 -  83230942 gt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17210400 2 -  99763055 gt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273418 2 +    378907 gt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127709 2 + 121039945 gt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60344060 2 + 169600520 gt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107334552 2 - 171882078 gt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1799760 2 -   1987038 gt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21052510 2 -  24206276 gt
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276             492187 2 -   3282555 gt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       277134 2 -   1024465 gt
i cebCap1.NW_016107979v1    C 0 C 0
s canFam3.chr30                 36322 2 -  40214260 gt
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e calJac3.chrY                 187627 4366 -   2853901 I
e dasNov3.JH569975              20901 0 -   2180720 C
e otoGar3.GL873530            6744595 639 -  36342412 I
e colAng1.NW_012118866v1       716462 450 -    764599 M
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M

a score=23314.000000
s hg38.chr15_KI270850v1_alt    174817  7 +    430880 TT-------TATAt
s panTro5.chr15              17984092  7 -  83230942 tt-------tatat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17210402  7 -  99763055 tt-------tatat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273420  7 +    378907 tt-------tatat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127711  7 + 121039945 tt-------tatat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60344062  7 + 169600520 tt-------tatat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107334554  2 - 171882078 tt------------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1799762  7 -   1987038 tt-------tatat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21052512 14 -  24206276 tttTATATATATAt
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276             492189  7 -   3282555 tt-------tatat
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       277136  7 -   1024465 tt-------tatat
i cebCap1.NW_016107979v1    C 0 I 1065
s otoGar3.GL873530            6745234  7 -  36342412 TT-------CTTTT
i otoGar3.GL873530          I 639 C 0
s canFam3.chr30                 36324  7 -  40214260 tt-------tatac
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e calJac3.chrY                 187627 4366 -   2853901 I
e dasNov3.JH569975              20901  0 -   2180720 C
e colAng1.NW_012118866v1       716462 450 -    764599 M
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M

a score=21813.000000
s hg38.chr15_KI270850v1_alt    174824 6 +    430880 tctttt
s panTro5.chr15              17984099 6 -  83230942 tctttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17210409 6 -  99763055 tctttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273427 6 +    378907 tctttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127718 6 + 121039945 tctttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60344069 6 + 169600520 tctttt
i rheMac8.chr7              C 0 I 530
s cerAty1.NW_012002657v1      1799769 6 -   1987038 tctttt
i cerAty1.NW_012002657v1    C 0 I 528
s chlSab2.chr29              21052526 6 -  24206276 ttttat
i chlSab2.chr29             C 0 I 7
s saiBol1.JH378276             492196 6 -   3282555 cATTTT
i saiBol1.JH378276          C 0 I 308
s otoGar3.GL873530            6745241 6 -  36342412 ttttct
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 36331 6 -  40214260 tctttt
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e calJac3.chrY                 187627 4366 -   2853901 I
e dasNov3.JH569975              20901 0 -   2180720 C
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e colAng1.NW_012118866v1       716462 450 -    764599 M
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e macFas5.chr7              107334556 0 - 171882078 C

a score=1763.000000
s hg38.chr15_KI270850v1_alt    174830 2 +    430880 tt
s panTro5.chr15              17984105 2 -  83230942 tc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17210415 2 -  99763055 tc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273433 2 +    378907 tt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127724 2 + 121039945 tt
i nomLeu3.chr6              C 0 C 0
s canFam3.chr30                 36337 2 -  40214260 tt
i canFam3.chr30             C 0 I 51
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e calJac3.chrY                 187627 4366 -   2853901 I
e dasNov3.JH569975              20901 0 -   2180720 C
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e otoGar3.GL873530            6745247 0 -  36342412 C
e colAng1.NW_012118866v1       716462 450 -    764599 M
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e chlSab2.chr29              21052532 7 -  24206276 I
e cerAty1.NW_012002657v1      1799775 528 -   1987038 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e macFas5.chr7              107334556 0 - 171882078 C
e rheMac8.chr7               60344075 530 + 169600520 I
e saiBol1.JH378276             492202 308 -   3282555 I

a score=37897.000000
s hg38.chr15_KI270850v1_alt    174832 29 +    430880 ----ttttttttttttgacgcggagtctcactt
s panTro5.chr15              17984107 27 -  83230942 ----ttttttttttgtgaca--gagtctcactc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17210417 24 -  99763055 -------tttttttgtgaca--gagtctcactc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273435 33 +    378907 ttttttttttttttttgacacagagtctcgctt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127726 25 + 121039945 ------ttttttttgagaca--gagtctctctc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107334556 31 - 171882078 ttttttttttttttaagacg--aagtctcgctc
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21052539 31 -  24206276 atttttttttttttgagacg--aagtctcgctc
i chlSab2.chr29             I 7 C 0
s otoGar3.GL873530            6745247 28 -  36342412 tcttctttttttttgagaca--gagtctct---
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e calJac3.chrY                 187627 4366 -   2853901 I
e dasNov3.JH569975              20901  0 -   2180720 C
e canFam3.chr30                 36339 51 -  40214260 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e colAng1.NW_012118866v1       716462 450 -    764599 M
e manLeu1.NW_012105520v1      1083774 8981 +   1458659 I
e cerAty1.NW_012002657v1      1799775 528 -   1987038 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e rheMac8.chr7               60344075 530 + 169600520 I
e saiBol1.JH378276             492202 308 -   3282555 I

a score=194411.000000
s hg38.chr15_KI270850v1_alt    174861 77 +    430880 tgtcgcccaggctggaatgcagtggcgtgatctcagctcactggaagctccacctcctgggttcacaccattctcct
s panTro5.chr15              17984134 77 -  83230942 tgtcacccaggctggagtgcagtggcatgatctcagctcactgcaagctctacctcctgggttcccaccattctcct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17210441 77 -  99763055 tgtcacccaggctggagtgcagtggcatgatctcagctcactgcaagctctacctcctgggttcccaccattctcct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273468 77 +    378907 tgtcgcccaggttggaatgcagtggcgtgatctcagctcactggaagctccacctcctgggttcccaccattctcct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127751 77 + 121039945 tgtcacccaggctggagtgcagtggcatgatctcagctcactgcaagctccacctcctgggttcacaccattctcct
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107334587 77 - 171882078 tgttgcccaggctggagtgcagtggcatgatctgcgctcactacaagctctgcctcctgggttcacatcattctcct
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21052570 77 -  24206276 tgtcgcccaggctggagtgcagtggcatgatctgtgctcactgcaagctttgcctcccaggttcacatcattctcct
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       281893 77 -   1458659 tgttgcccaggctggagtgcagtggcatgatctgcgctcactacaagctccgcctcccgggttcacatcattctcct
i manLeu1.NW_012105520v1    n 8981 C 0
s otoGar3.GL873530            6745275 74 -  36342412 tgttgcccttggtagagtgctgtggtg---tcacagttcacagcaacctcaaactcttgggcttaagtgatactctt
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e calJac3.chrY                 187627 4366 -   2853901 I
e dasNov3.JH569975              20901  0 -   2180720 C
e canFam3.chr30                 36339 51 -  40214260 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e colAng1.NW_012118866v1       716462 450 -    764599 M
e cerAty1.NW_012002657v1      1799775 528 -   1987038 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e rheMac8.chr7               60344075 530 + 169600520 I
e saiBol1.JH378276             492202 308 -   3282555 I

a score=216788.000000
s hg38.chr15_KI270850v1_alt    174938 63 +    430880 gcctcagcctccccagtagctgggactacaggcgcccgccaccattcccggctaattttttgt
s panTro5.chr15              17984211 63 -  83230942 gcctcagcctccccagtagctgggactacaggtgcccaccaccatgcccggctaattttttgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17210518 62 -  99763055 gcctcagcctccccagtagctgggactacaggtgcccacctccatgcccggctaattttgta-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273545 63 +    378907 gcctcagcctccccagtagctgggactacaggcgcccgccaccattcctagctaattttttgt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127828 63 + 121039945 gcctcagcctccccagtagctgggactacaggcgcccgccaccatgcccggataactttctgt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107334664 62 - 171882078 gcctcagtctccccagtagctgggactacaggtgcccaccaccatgcccagctaatttt-tgt
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21052647 62 -  24206276 gcctcagcctccccagtagctgggactacaggtgcccaccaccatgcccagctaatttt-tat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       281970 62 -   1458659 gcctcagcctccccagtagctgggactacaggtgcccaccaccatgcccagctaatttt-tgt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       716917 62 -    764599 gcctcagcttccccagtagctgggactacaggtgcccaccaccatgcccggctaatttt-tgt
i colAng1.NW_012118866v1    M 450 C 0
s otoGar3.GL873530            6745349 63 -  36342412 gccacagcctcccaagtaggtgggactacaggtacctgccacaacacccagctatttttttgt
i otoGar3.GL873530          C 0 I 5240
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e calJac3.chrY                 187627 4366 -   2853901 I
e dasNov3.JH569975              20901  0 -   2180720 C
e canFam3.chr30                 36339 51 -  40214260 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e cerAty1.NW_012002657v1      1799775 528 -   1987038 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e rheMac8.chr7               60344075 530 + 169600520 I
e saiBol1.JH378276             492202 308 -   3282555 I

a score=356691.000000
s hg38.chr15_KI270850v1_alt    175001 125 +    430880 attttttagtagagatggggtttcaccatgttagccaggatggtctggatctcctgaccgcgtgatctgcccaccttggcctcccaaagtgctgggatt-acaggcgtgagccactgtgcccagcc
s panTro5.chr15              17984274 126 -  83230942 attttttagtagagatggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtaatctgcccaccttggcctcccaaaatgctgggatttacaggcatgaaccactgtgcccagcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17210580 123 -  99763055 ---ttttagtagagatggggtctcaccatgttagccaggatggtctcgatctcctgacctcgtaatctgcccaccttggcctcccaaaatgctgggatttacaggcatgaaccactgtgcccagcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273608 125 +    378907 attttttagtagagatggggtttcaccgtgttagccaagatggtctggatctcctgaccgcgtgatctgcccaccttggcctcccaaagtgctgggatt-acaggcgtgagccactgttcccagcc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102127891 125 + 121039945 attttttagtagaggtggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccgcccaccctggccttccaaaatgctgggatt-acaggtgtgagccactgcgcctggcT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107334726 125 - 171882078 attttttagtagagatgggggttcaccattttagccaggatggtctcgatctcctgatctcatgttctgcctgcctcggcctcccaaagtgctgggatt-acaggtgtcagccactgtgcccggcc
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21052709 125 -  24206276 attttttagtagagatgggggttcaccattttagccaggatggtctcgatctcctgatctcatgttctgcctgcctcggcctcccaaagtgctgggatt-acaggtgtcagccactgtgcccagcc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282032 125 -   1458659 attttttagtagagatgagggttcaccattttagtcaggatggtctcgatctcctgatctcatgttctgcctgcctcggcctcccaaagtgctgggatt-acaggtgtcagccactgtgcccggcc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       716979 125 -    764599 attttttagtagagatggggcgtcaccatgttagccaggatgatctcgatctcctgatctcatgttctgcctgcctcggcctcccaaagtgctgggatt-acaggtgtcagccactgtgcctggcc
i colAng1.NW_012118866v1    C 0 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e calJac3.chrY                 187627 4366 -   2853901 I
e dasNov3.JH569975              20901   0 -   2180720 C
e canFam3.chr30                 36339  51 -  40214260 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e otoGar3.GL873530            6745412 5240 -  36342412 I
e cerAty1.NW_012002657v1      1799775 528 -   1987038 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e rheMac8.chr7               60344075 530 + 169600520 I
e saiBol1.JH378276             492202 308 -   3282555 I

a score=27225.000000
s hg38.chr15_KI270850v1_alt    175126 8 +    430880 CTTTTATA
s panTro5.chr15              17984400 8 -  83230942 attttata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17210703 8 -  99763055 ATTTTATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273733 8 +    378907 CTTTTATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128016 8 + 121039945 GTCTTATA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107334851 8 - 171882078 cttttata
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21052834 8 -  24206276 CTTTTATA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282157 8 -   1458659 CTTTTATA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       717104 8 -    764599 CTTTTATA
i colAng1.NW_012118866v1    C 0 C 0
s dasNov3.JH569975              20901 8 -   2180720 cttttata
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e calJac3.chrY                 187627 4366 -   2853901 I
e canFam3.chr30                 36339 51 -  40214260 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e otoGar3.GL873530            6745412 5240 -  36342412 I
e cerAty1.NW_012002657v1      1799775 528 -   1987038 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e rheMac8.chr7               60344075 530 + 169600520 I
e saiBol1.JH378276             492202 308 -   3282555 I

a score=30445.000000
s hg38.chr15_KI270850v1_alt    175134 8 +    430880 TTCTTTTA-
s panTro5.chr15              17984408 8 -  83230942 ttctttta-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17210711 8 -  99763055 TTCTTTTA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273741 8 +    378907 TTCTTTTA-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128024 8 + 121039945 TTCTTTTA-
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107334859 8 - 171882078 ttctTTTA-
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21052842 8 -  24206276 TTCTTTTA-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282165 8 -   1458659 TTCTTTTA-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       717112 8 -    764599 TTCTTTTA-
i colAng1.NW_012118866v1    C 0 C 0
s otoGar3.GL873530            6750652 8 -  36342412 TTATCTTA-
i otoGar3.GL873530          I 5240 C 0
s dasNov3.JH569975              20909 8 -   2180720 -tcctttat
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e calJac3.chrY                 187627 4366 -   2853901 I
e canFam3.chr30                 36339 51 -  40214260 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e cerAty1.NW_012002657v1      1799775 528 -   1987038 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e rheMac8.chr7               60344075 530 + 169600520 I
e saiBol1.JH378276             492202 308 -   3282555 I

a score=6006.000000
s hg38.chr15_KI270850v1_alt    175142 1 +    430880 A
s panTro5.chr15              17984416 1 -  83230942 a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17210719 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273749 1 +    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128032 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107334867 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21052850 1 -  24206276 A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282173 1 -   1458659 A
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       717120 1 -    764599 A
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 191993 1 -   2853901 a
i calJac3.chrY              I 4366 C 0
s otoGar3.GL873530            6750660 1 -  36342412 A
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              20917 1 -   2180720 a
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e canFam3.chr30                 36339 51 -  40214260 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e cerAty1.NW_012002657v1      1799775 528 -   1987038 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e rheMac8.chr7               60344075 530 + 169600520 I
e saiBol1.JH378276             492202 308 -   3282555 I

a score=654810.000000
s hg38.chr15_KI270850v1_alt    175143 161 +    430880 -----AAAGTAT----TTACTGTATTTTCCCATGATGTCAT--AGTCTTTATagaaaaataacaatcattattttcagttgacatgattgtttac-ctaaaaat----atccaaaggaaccaactg-aaaaaaaacaatttttaagattactggttaaaagttctt-ttatataaaaat
s panTro5.chr15              17984417 158 -  83230942 -----aaagtat----ttactgtattttcccatgATGTCAT--AGTCTTTATagaaaaataacaatcattattttcagttgacatgattgtttac-ctaaaaat----atccaaaggaaccaactg-aaaaaaaaa---ttttaagattactggttaaaagttctt-ttatataaaaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17210720 157 -  99763055 -----AAAGTAT----TTACTGTATTTTCCCATGATGTCAT--AGTCTTTATagaaaaataacaatcattattttcagttgacatgattgtttac-ctaaaaat----atccaaaggaaccaactg-aaaaaaaa----ttttaagattactggttaaaagttctt-ttatataaaaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273750 161 +    378907 -----AAAGTAT----TTACTGTATTTTCCCATGATGTCAT--AGTCTTTATagaaaaataacaatcattattttcagttgacatgattgtgtac-ctaaaaat----atccaaaggaaccaactg-aaaaaaaacaatttttaagattactggttaaaagttctt-ttatataaaaat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128033 156 + 121039945 -----AAAGTAT----TTACTGTATTTTCCCATGATGTCAT--AGTCTTTATagaaaaataacaatcattattttcagttgacgtgattgtttac-ctaaaaat----agcc-aaggaaccaactg-aaaaaaat----ttttaagattactggttaaaagttctt-ttatataaaaat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107334868 156 - 171882078 -----AAAGTAT----TTACTGTATTTTACCATGATGTCAT--AGTGTTTATagaaaa--aaaaatcattattttcagttgacatgattgtttac-ctgaaaat----atccaaaggaaccaactg-aaaaaaca--atttttaagattagtggctaaaagctc-t-ttatataaaaat
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21052851 156 -  24206276 -----AAAGTAT----TTACTGTATTTTACCATGATGTCAT--AGTGTTTACagaaaa--aaaaatcattattttcagttgacatgattgtttac-ctgaaaat----atccaaaggaaccaactg-aaaaaaca--atttttaagattagtggctaaaagctc-t-ttatataaaaat
i chlSab2.chr29             C 0 I 298
s manLeu1.NW_012105520v1       282174 158 -   1458659 -----AAAGTAT----TTACTGTATTTCCTCATGATGTCAT--AGTCTTTATATaaaaataacaatcattatttttagttgacatgattgtttac-ctgaaaat----atccaaaggaaccaactg-aaaaaaca--atttttaagattagtggctaaaagctc-t-ttatataaaaat
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       717121 156 -    764599 -----AAAGTAT----TTACTGTATTTTACCATGATGTCAT--AGTGTTTACagaaa---aaaaatcattattttcagttgacatgattgtttac-ctgaaaat----atccaaaggagccaactgaaaaaaaca--atttttaagattagtggctaaaagctc-t-ttatataaaaat
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 191994 156 -   2853901 -----aaaaaaa----ttattgtattttcccataac-ataa--agtctttatagaaaaataaccatcattattttcagctgacatgattgtttac-ctaaacat----attcagaggaaccaattc---aaaaaa--gtttttaagattaccagttaaaagctc-tgttacataaaaat
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             492510 159 -   3282555 -----aaaaaaa----TTACTGTATTTTCCCATGATAACAA--AGTCTTTATagaaaaataaccatcattattttcagctgacatgattgtttac-ctaaaaat----attcagaggaaccaactcaaaaaaaaa--gttcttaagattaccagttaaaagctg-t-taacataaaaat
i saiBol1.JH378276          I 308 C 0
s otoGar3.GL873530            6750661 159 -  36342412 -----GAAATTTAACATTATTGTATTT-CCCATG-TCACAA--AGGTCCTGTCaaaaaattaaaataattatttCCAGGTGACATGATTGTTCATACTAAAAAGAAAAATCCCAAGGAACCAACTG-AAAAAGTG--------AAGATGACTTG-TAAAAGCTCTG-TTATATACGAAT
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              20918  96 -   2180720 aagttaacatta----ACATTGTTTTTTTCCATGATGTAATAAAGTCCTTATAAaaaaat----gtcattatttgcaggtggcataattgtttac-ctaaaaTT----A----------------------------------------------------------------------
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e canFam3.chr30                 36339  51 -  40214260 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e cerAty1.NW_012002657v1      1799775 528 -   1987038 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e rheMac8.chr7               60344075 530 + 169600520 I

a score=184022.000000
s hg38.chr15_KI270850v1_alt    175304 39 +    430880 caatagccttccccaatgttagctataatcacatagaac
s panTro5.chr15              17984575 39 -  83230942 caatagccttccccaatgttagctataatcacatagaag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17210877 39 -  99763055 caatagccttccccaatgttagctataatcacatagaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273911 39 +    378907 caatagccttccccaatgttagctataatcacatagaag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128189 39 + 121039945 caatagccttccccaatgttagctataatcacatagaag
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107335024 39 - 171882078 caatatccttccccaatgctagctataatcacatagaag
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21053305 39 -  24206276 caatatccttccccaatgctagctataatcacatagaag
i chlSab2.chr29             I 298 C 0
s manLeu1.NW_012105520v1       282332 39 -   1458659 caatatccttccccaatgctagctataatcacatagaag
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       717277 39 -    764599 caatatccttccccaatgctagctataataacatagaag
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 192150 39 -   2853901 cagcagcattcaacaattttagctgtaatcacacagaag
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             492669 39 -   3282555 cagaagcattccacaattttagctataatcacacagaag
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6750820 35 -  36342412 CAGCAGTTTTCCCAAATTTCAGCTATAATCAGATG----
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              21014 29 -   2180720 -----GCTTTCT----TGTCAGCC-TGATCAGATAGAAA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e canFam3.chr30                 36339 51 -  40214260 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e cerAty1.NW_012002657v1      1799775 528 -   1987038 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e rheMac8.chr7               60344075 530 + 169600520 I

a score=1378194.000000
s hg38.chr15_KI270850v1_alt    175343 205 +    430880 atatagtgat-gaagta-ttttttcaggtatttc---------agcaaaaat--taaatacctaggaataaactt-agatgtgcagggcttttatcaaggacatgacaaaattttgctgagaggaatgaaagatttgcattctatgttcctgaatgagcagatttcatgttataaatatgtta----tcaccatgtcttcatattaatttataaa-tg-----------------------------taatTT
s panTro5.chr15              17984614 209 -  83230942 atatagtgat-gaagta-ttttttcaggtatttc---------agcaaaaat--taaatacctaggaataaactt-agatgtgcagggcttttatcaaggacaggacaaaattttgctgagtggaatgagagatttgcattttatgttcctggatgagcagatttcatgttataaatatgTTAGTTATCACCGTGTCTTCATATTAATTTATAAA-TG-----------------------------TAATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17210916 209 -  99763055 atatagtgat-gaagta-ttttttcaggtatttc---------agcaaaaat--taaatacctaggaataaactt-agatgtgcagggcttttatcaaggacaggacaaaattttgctgagtggaatgagagatttgcattttatgttcctggatgagcagatttcatgttataaatatgttagttatcaccgtgtcttcatattaatttataaa-tg-----------------------------taatTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       273950 205 +    378907 atatagtgat-gaagta-ttttttcaggtatttc---------agcaaaaat--taaatacctaggaataaactt-agatgtgcagggcttttatcaaggacatgacaaaattttgctgagaggaatgaaagaTTTGCATTCTATGTTCCTGAATGAGCAGATTTCATGTTATAAATATGTTA----TCACCATGTCTTCATATTAATTTATAAA-TG-----------------------------TAATTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128228 206 + 121039945 atataatgat-gaagta-ttttttcaggtatttc---------agcaaaaat--taaatacctaggaataaactt-agatgtgcaggacttttatcaaggacatgacaaaattttgctgagaggaatgaaagatttgcattctatgttcctggatgagcagatttcatgttataaatacgttagttatcaccaTGTCTTCATAT---TTTATAAA-TG-----------------------------TAATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60344605 201 + 169600520 atataGTGAT-AAAGTA-TTTTTTCAAGTATTGTA--------AGCAAAAAT--TAAATACCTAGGAATAAACTT-AGATGTGCAGGACTTTTATAAAGGACATGACAAAATTTTGCTGAGTTGAATGAAAGATTTGCATTCTATGTTCCTGGATGAGCAGATTTCATATTATAA---------TTATCACCATGTCTTCATAGTAATTTATAAA-TA-----------------------------TAATTT
i rheMac8.chr7              I 530 C 0
s macFas5.chr7              107335063 218 - 171882078 atatagtggt-gcagta-ttttttcaggtttttcaggtgtttcagcaaaaat--taaatatctaggaataaactt-agatgtgcaggacttttatcaaggacatgacaaaattttgctgagtgaaatgaaaCATTTGCATTCTATGTTCCTGGATGAGCAGATTTCATGCTATAAATATGTTAGTTATCACCATGTCTTCATATTAATTTATAAA-TG-----------------------------TAATTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1800303 201 -   1987038 atatagtgat-aaagta-ttttttcaagtattgta--------agcaaaaat--taaatacctaggaataaactt-agatgtgcaggacttttataaaggacatgacaacattttgctgagtggaatgaaagatttgcattctatgttcctggatgagcagatttcatattataa---------ttatcaccatgtcttcatagtaatttataaa-ta-----------------------------taatTT
i cerAty1.NW_012002657v1    I 528 C 0
s chlSab2.chr29              21053344 218 -  24206276 atatagtgat-gcagta-ttttttcaggtttttcaggtgtttcagcaaaaat--taaatatctaggaataaactt-agatgtgcaggacttttatcaaggacatgacaaaattttgctgagtgaaatgaaagatttgcattctatgttcctggatgaacagatttcatgctataaatatgtcagttatcaccatgtcttcatattaatttataaa-tg-----------------------------taatTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282371 218 -   1458659 atatagtggt-gcagta-ttttttcaggtttttcaggtgtttcagcaaaaat--taaatatctaggaataaactt-agatgtgcaggacttttatcaaggacatgacaaaattttgctgagtgaaatgaaagatttgcattctatgttcctggatgagcagatttcatgctataaatatgttagttatcaccaTGTCTTCATATTAATTTATAAA-TG-----------------------------TAATTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       717316 216 -    764599 atatagtgat-gcaata-ttttttcaggtttttcaggtgtttcagcaaaaat--taaatatctaggaataaac---agatgtgtaggacttttatcaaggacatgacaaaattttgctgagtggaatgaaagaTTTGCATTCTATGTTCCTGGACGAGCAGATTTCATGCTATAAATATGTTGGTTATCACCGTGTCTTCATATTAATTTATAAA-TA-----------------------------TAATTT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 192189 204 -   2853901 ataaagggat-aaagtatttttttcaagtatttt---------aacaaaaat--tacatacctaggaataaactt-agatgtgcaggacttttgtcaagaacatgaca--atttttctgagtggaatgaaagaTTTGTATTCTGTGTTCCTGGATGAGCAGATTTAATTATATAAATATGTCAGTTATCACCGTGTCTTTATA----TTCATAAA-TG-----------------------------TAATTT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             492708 206 -   3282555 atatagggat-aaagtatttttttcaagtatttt---------aacaaaaat--tacatacctaggaataaacttaagatgtgcaggacttttgtcaagaacaggatg--attttgctgagtggaatgaaagatttgcattctatgttcctggatgagcagatttaataatataaatatatcagttatcacgatgtctttata----ttcataaactg-----------------------------taattt
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6750855 226 -  36342412 ATATAGTGATAAAAGTA-TTTTATTGACAGTCAC---------AATAAAA-------ATAGCCAGAAAT-------agatgtgctgggtttatatcaggaaaactatgaaaattttctaagtggaatgaaagacttgaatactgtgttccgagatgggcgaactccatat--taaacatatcagttatcttcatgtcttcatattaatttataaa-tagtgcaattctagtacaaattccaccagacttattt
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              21043 182 -   2180720 ATATAGTGGA-AAAATA-TTTCATTGACAGTAAC---------AACAAAAATACTACGTAACTAGGAATAAACTT-A--------------TTATCAAGGA-------AAATTTTGTTGAGTGGAATGAAATACTTAAatactatgtttctggatgggcagtttccataatataaataggccagtta--------tctccctatcagtttataaa-ta-----------------------------tagtgt
i dasNov3.JH569975          C 0 I 323
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e canFam3.chr30                 36339  51 -  40214260 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M

a score=1278836.000000
s hg38.chr15_KI270850v1_alt    175548 254 +    430880 CT------------------------------------------------------------gctgggcacagtggctcatacctgtaatctgaacagtttgggaagctgaagtgggtagatgac--------------------------------------------------------------aat---------------------tagctgggtgtctgtggcacacacttgt---tccaactacttctgaggccgaggtgggaggatcacttgagcctgggaggcagaggttgcagtgagccgagatc-tgcctctgaactccagcctaggtgacagaataagaccctgtctc-----aaaaaaaaaaaaaaaa-aCACACAGGA------AAAAAAAGGGTGtat
s panTro5.chr15              17984823 258 -  83230942 CT------------------------------------------------------------gctgggcacagtggctcatacctgtaatccaaacagtttgggaagctgaggtgggtagatgac--------------------------------------------------------------aat---------------------tagctgggtgtctgtggcacacacttgtagttccaactactcctgaggctgaggagggaggatcacttgagcctgggaggcagaggttgcagtgagccgagatcatgcctgtgaactccagcctaggtgacagagtaagaccctgtctc-----aaaaaaaaaagaaaaa-agaaaaaaga------aaaaaAAgtgtgtgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211125 256 -  99763055 CT------------------------------------------------------------gctgggcacagtggctcatacctgtaatccaaacagtttgggaagctgaggtgggtagatgac--------------------------------------------------------------aat---------------------tagctgggtgtctgtggcacacacttgtagttccaactactcctgaggctgaggagggaggatcacttgagcctgggaggcagaggttgcagtgagccgagatcatgcctgtgaactccagcctaggtgacagagtaagaccctgtct-------acaaaaaaagaaaaa-agaaaaaaga------aaaaaAAgtgtgtgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274155 258 +    378907 CT------------------------------------------------------------gctgggcacagtggctcatacctgtaatctgaacagtttgggaaactgaggtgggtagatgac--------------------------------------------------------------aat---------------------tagctgggtgtctgtgggacacacttgtagttccagctacttctgaggccgaggtgggaggatcacttgagcctgggaggcagaggttgcagtgagccgaggtcatgcctctgaactccagcctaggtgacagagtaagaccctgtctc-----aaaaaaaaaaaaaaaa-aaCACACAGA------AAAAAAAGGGTGtat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128434 260 + 121039945 CT------------------------------------------------------------gctgggcacggtggctcatacgtgttatccgaagagtttgggaagctgaggagggtagatgac--------------------------------------------------------------aat---------------------taactgggtgtctgtggcacacacttgtagttccaaccactcctgaggctaaggcgggaggatcccttgagcctgggaggcagaggttgcagtgagccgagatcattcctctgaactccagcctaggtgacagagtaagaccctgtctc---aaaaaaaaaaaaaaaaaa-aaagaaaaga------aaaaaaaGCGTGTGt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60344806 220 + 169600520 CT------------------------------------------------------------GCTGGGCACAGT-----------------------------AAAGCTGAGGTGGGTAGACAAC--------------------------------------------------------------aat---------------------tagctgggcgtccatggcacacacttacagttccaactgctcaggaggctgaggtgggaggatcacttgaacctgggaggcagaggttgcagtgagctgagatcatgccttggaactccagcctaggtgacagagtgagaccctgtctc--------------aaaaaaa-aaaatatata------tatatatatgtatat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335281 256 - 171882078 CT------------------------------------------------------------gctgggcacagtggctcatacctgtaatcccaaaagtttgggaagctgaggtgagtagatgac--------------------------------------------------------------aat---------------------tagctgggtgtctgtggcacacacttgtagttccaactactcctgaggctgaggcaggaggatcacatgagcctgggaggcagaggttgcagtgagccgagatcatgcctctgaactccagcctaggtgacagagtgagaccgtgtctc-------aaaaaaaaaaaaaa-aaaaaagaga------aaaaaaAGTGTGTGt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1800504 251 -   1987038 CT------------------------------------------------------------gctgggcacagtggctcacaccactaatcccaaaagtttgggaagctgaagtgggtagacgac--------------------------------------------------------------aat---------------------tagctgggtgtccatggcacacacttatagttccaactgctcaggaggctgaggtgggaggatcacttgagcctgggaggcagaggttgcagtgagctgagatcatgcctctgaactccagcctaggtgacagagtgagaccctgtctc-----------aaaaaaaaaa-aaaaaagaga-------aaaaaaGTGTGTGt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21053562 259 -  24206276 CT------------------------------------------------------------gctgggcacagtggttcatacctgtaatcccaaaagtttgggaagctgaggtgagtagaCGAC--------------------------------------------------------------aat---------------------tagctgggtgtctgtggcacacacttgtagttccaactactcctgaggctgaggcaggaggatcacatgagcctgggaggcagaggttgcagtgagctgagatcatgcctctgaactccagcctaggtgacagagtgacaccgtgtctc-------aaaaaaaaaaaaaa-aaaaaCAAGA---GAGAGGAAAAAAGTGTGt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282589 236 -   1458659 CT------------------------------------------------------------gctgggcacagtggctcatacctgtaatcccaaaagtttgggaagctgaggtgagtagatgac--------------------------------------------------------------aat---------------------tagctgcgtgtctgtggcacacacttgtagttccaactactcctgaggctgaggcaggaggatcacatgaacctgggaggcagaggttgcagtgag--------------------------ctaagtgacagagtgagatcgtgtctc----caaaaaaaaaaaaaaaa-aaaAAAGAGA---GAGAAAAAAAAAGTGTGt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       717532 231 -    764599 CT------------------------------------------------------------gctgggcacagtggctcatacctgtaatccca---------gaagctgaggtgagtagatgac--------------------------------------------------------------aat---------------------tagctgggtgtctgtggcacacacttgtagttccaactactcctgaggctgaggcgggaggatcacttgagcttgggaagcagaggttgcagtgagccgagatcacgtctctgaactccagcctaggtgacagagtgagaccatgtctc---------------aaaaaa-aaaaaagaga------aaaaaa--------t
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 192393 302 -   2853901 CT------------------------------------------------------------gctgggtgcggtggctcatgcccgtaattccagaactttggaaagctgaggtcggcaggtcacttgagctcatgagttcaagaccagtctgggcaacatggtgaaaccctgtctcaaaaaaaaaaaaa---------------------gagctgggtgt-ggtggcacatacttgtaatcccagctactcaggaggctgaggttcaaggatcacttgagcctgagaggcagagcttccagtaagtctagattgtgcctctgaactccagcctaggtgacagagtgagaccttgtctc-------------aaaaaaaa-cccaaaaagc------aaaaaa---------
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             492914 324 -   3282555 ct------------------------------------------------------------gctgggcgcagtggctcatgcctgtaattccataactttgggaagctgaggtgggcaggtcacttgagctcatgagttcaagaccagtctgggcaacatggtgaaaccctgtgtcaaaaaaaaaaaaaaaaataaaaaaaaaaaaaaatgagatgggtgt-ggtggcacatatttgtaatgccagctactcaggaggctgaggtttgaggatcacttgagcctgggaggcagagcttgcactaagtctagattgtgcctctgaactccagcctaggtgacagagtgagaccttgtctc-------------aaaaaaaaccccaaaaacc------aaaaaa---------
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6751081 378 -  36342412 ttggaactcgaaatgactctaaaatttGCTTAAAAGAGTAAATAAAAAATAAAATGGAAAAggctgggcacagtagttcatgcctgtaatcctagcactctgggaggcctcagcagatggattgcctgagctcagaagtttgaaaccagcctgagccagagtgagactttgtctctaa---------aaa---------------------tagctgggcgt-tgtggtgggtacctatagtcctagctactttggaggctgaggcaagaggattgcttgagtctaagagttggaggttgctatgagctaaga---caccatggcactctactgagggcaacaaagtgacactctgtctccccccaaaaaaagtttaaaaa-aaGTAAGAGACTTGCTCAAGCAGATGTGTAC
i otoGar3.GL873530          C 0 I 252
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e dasNov3.JH569975              21225 323 -   2180720 I
e canFam3.chr30                 36339  51 -  40214260 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M

a score=29208.000000
s hg38.chr15_KI270850v1_alt    175802 17 +    430880 atatatacacattttat
s panTro5.chr15              17985081 17 -  83230942 atatatacgcattttgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211381 17 -  99763055 atatatacgcattttgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274413 17 +    378907 atatatacacgttttat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128694 17 + 121039945 atatatacacattttat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345026 11 + 169600520 ataca------ttttat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335537 10 - 171882078 atata------tttta-
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1800755 10 -   1987038 atata------tttta-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21053821 11 -  24206276 atata------ttttat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282825 11 -   1458659 atata------ttttat
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       717763 11 -    764599 atata------ttttat
i colAng1.NW_012118866v1    C 0 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e calJac3.chrY                 192695  0 -   2853901 C
e dasNov3.JH569975              21225 323 -   2180720 I
e canFam3.chr30                 36339 51 -  40214260 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e otoGar3.GL873530            6751459 252 -  36342412 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e saiBol1.JH378276             493238  0 -   3282555 C

a score=8190.000000
s hg38.chr15_KI270850v1_alt    175819 2 +    430880 at
s panTro5.chr15              17985098 2 -  83230942 at
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211398 2 -  99763055 at
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274430 2 +    378907 at
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128711 2 + 121039945 at
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345037 2 + 169600520 at
i rheMac8.chr7              C 0 C 0
s chlSab2.chr29              21053832 2 -  24206276 at
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282836 2 -   1458659 at
i manLeu1.NW_012105520v1    C 0 I 34
s colAng1.NW_012118866v1       717774 2 -    764599 at
i colAng1.NW_012118866v1    C 0 C 0
s canFam3.chr30                 36390 2 -  40214260 at
i canFam3.chr30             I 51 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e calJac3.chrY                 192695 0 -   2853901 C
e dasNov3.JH569975              21225 323 -   2180720 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e otoGar3.GL873530            6751459 252 -  36342412 I
e cerAty1.NW_012002657v1      1800765 0 -   1987038 C
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M
e macFas5.chr7              107335547 0 - 171882078 C
e saiBol1.JH378276             493238 0 -   3282555 C

a score=-4275.000000
s hg38.chr15_KI270850v1_alt    175821 29 +    430880 ttcatatatatatt---tatatataaattttg----
s panTro5.chr15              17985100 19 -  83230942 tttatatatata-------------aattgtg----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211400 19 -  99763055 tttatatatata-------------aattgtg----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274432 29 +    378907 ttcatatatatatt---tatatataaattttg----
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128713 31 + 121039945 tttatatatatatt-tatatatataaattttg----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345039 29 + 169600520 --tttatatatatt-tatatatataAATTTtg----
i rheMac8.chr7              C 0 I 22
s macFas5.chr7              107335547 17 - 171882078 ---------------tatatatatacattttg----
i macFas5.chr7              C 0 I 12
s cerAty1.NW_012002657v1      1800765 25 -   1987038 ------tatatatt-tatatatataaattttg----
i cerAty1.NW_012002657v1    C 0 I 22
s chlSab2.chr29              21053834 14 -  24206276 ------------------atatatatattttg----
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012118866v1       717776 14 -    764599 ------------------atatatacattttg----
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 192695 11 -   2853901 ----------------CCATATATATA---------
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493238 11 -   3282555 ----------------ccatatatgta---------
i saiBol1.JH378276          C 0 C 0
s canFam3.chr30                 36392 30 -  40214260 ------tccatattataaatatgtctattatctcca
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e dasNov3.JH569975              21225 323 -   2180720 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e otoGar3.GL873530            6751459 252 -  36342412 I
e manLeu1.NW_012105520v1       282838 34 -   1458659 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M

a score=38061.000000
s hg38.chr15_KI270850v1_alt    175850 21 +    430880 ------tatatatatgtatat---ataCA---a
s panTro5.chr15              17985119 21 -  83230942 ------tatgtatgtgtatat---ataCA---a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211419 21 -  99763055 ------tatgtatgtgtatat---ataCA---a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274461 21 +    378907 ------tatgtatatgtatat---ataCA---A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128744 21 + 121039945 ------tatgtatgtgtatat---ataCA---a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345090 21 + 169600520 ------TATATATATACACAC---atgca---a
i rheMac8.chr7              I 22 C 0
s macFas5.chr7              107335576 19 - 171882078 --------tatatatatatat---ataCA---a
i macFas5.chr7              I 12 C 0
s cerAty1.NW_012002657v1      1800812 21 -   1987038 ------tatataCACACACAC---atgca---a
i cerAty1.NW_012002657v1    I 22 C 0
s chlSab2.chr29              21053848 17 -  24206276 ----------tgtatatatat---ataCA---a
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282872 21 -   1458659 ------tatatatatacatac---ataCA---a
i manLeu1.NW_012105520v1    I 34 C 0
s colAng1.NW_012118866v1       717790 15 -    764599 ------------tatatatat---ataCA---A
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 192706  6 -   2853901 ------------------------AAATA---A
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493249  6 -   3282555 ------------------------aaata---a
i saiBol1.JH378276          C 0 C 0
s canFam3.chr30                 36422 33 -  40214260 tagctttatgttaatagaaattgaatgcaatta
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e dasNov3.JH569975              21225 323 -   2180720 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e otoGar3.GL873530            6751459 252 -  36342412 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M

a score=42015.000000
s hg38.chr15_KI270850v1_alt    175871 5 +    430880 atttc
s panTro5.chr15              17985140 5 -  83230942 atttc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211440 5 -  99763055 atttc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274482 5 +    378907 ATTTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128765 5 + 121039945 atctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345111 5 + 169600520 atttc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335595 5 - 171882078 atttc
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1800833 5 -   1987038 atttc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21053865 5 -  24206276 atttc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282893 5 -   1458659 atttc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       717805 5 -    764599 ATTTC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 192712 5 -   2853901 ATTTC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493255 5 -   3282555 atttc
i saiBol1.JH378276          C 0 C 0
s canFam3.chr30                 36455 5 -  40214260 attcc
i canFam3.chr30             C 0 I 3
s dasNov3.JH569975              21548 5 -   2180720 attct
i dasNov3.JH569975          I 323 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e proCoq1.NW_012149419v1       629276 5870 -   2566024 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e otoGar3.GL873530            6751459 252 -  36342412 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M

a score=25965.000000
s hg38.chr15_KI270850v1_alt    175876 5 +    430880 agtag
s panTro5.chr15              17985145 5 -  83230942 agtag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211445 5 -  99763055 agtag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274487 5 +    378907 AGTAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128770 5 + 121039945 agtag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345116 5 + 169600520 agtac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335600 5 - 171882078 agtac
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1800838 5 -   1987038 agtac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21053870 5 -  24206276 agtac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282898 5 -   1458659 agtac
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       717810 5 -    764599 AGTAC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 192717 5 -   2853901 AGTAC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493260 5 -   3282555 agtac
i saiBol1.JH378276          C 0 C 0
s proCoq1.NW_012149419v1       635146 5 -   2566024 agtat
i proCoq1.NW_012149419v1    I 5870 C 0
s canFam3.chr30                 36463 2 -  40214260 aa---
i canFam3.chr30             I 3 C 0
s dasNov3.JH569975              21553 5 -   2180720 gataa
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e otoGar3.GL873530            6751459 252 -  36342412 I
e macNem1.NW_012011056v1      5324031 1529 -   6271500 M

a score=42219.000000
s hg38.chr15_KI270850v1_alt    175881 5 +    430880 aaatt
s panTro5.chr15              17985150 5 -  83230942 aaatt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211450 5 -  99763055 aaatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274492 5 +    378907 AAATT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128775 5 + 121039945 aaatt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345121 5 + 169600520 aagtc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335605 5 - 171882078 aaatt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5325571 5 -   6271500 AAATT
i macNem1.NW_012011056v1    M 1529 C 0
s cerAty1.NW_012002657v1      1800843 5 -   1987038 aagtc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21053875 5 -  24206276 aaatt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282903 5 -   1458659 aaatt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       717815 5 -    764599 AGATT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 192722 5 -   2853901 AAAGC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493265 5 -   3282555 aaagc
i saiBol1.JH378276          C 0 C 0
s proCoq1.NW_012149419v1       635151 5 -   2566024 aaatc
i proCoq1.NW_012149419v1    C 0 C 0
s canFam3.chr30                 36465 5 -  40214260 aaatc
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              21558 5 -   2180720 aaatt
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e mm10.chr9                  55158336 6645 + 124595110 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e otoGar3.GL873530            6751459 252 -  36342412 I

a score=13073.000000
s hg38.chr15_KI270850v1_alt    175886 1 +    430880 c
s panTro5.chr15              17985155 1 -  83230942 c
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211455 1 -  99763055 c
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274497 1 +    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128780 1 + 121039945 c
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345126 1 + 169600520 c
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335610 1 - 171882078 c
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5325576 1 -   6271500 C
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1800848 1 -   1987038 c
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21053880 1 -  24206276 c
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282908 1 -   1458659 c
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       717820 1 -    764599 C
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 192727 1 -   2853901 T
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493270 1 -   3282555 c
i saiBol1.JH378276          C 0 C 0
s proCoq1.NW_012149419v1       635156 1 -   2566024 c
i proCoq1.NW_012149419v1    C 0 C 0
s mm10.chr9                  55164981 1 + 124595110 C
i mm10.chr9                 I 6645 C 0
s canFam3.chr30                 36470 1 -  40214260 c
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              21563 1 -   2180720 c
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 910812 779 - 119751181 I
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e otoGar3.GL873530            6751459 252 -  36342412 I

a score=9186.000000
s hg38.chr15_KI270850v1_alt    175887 1 +    430880 c
s panTro5.chr15              17985156 1 -  83230942 c
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211456 1 -  99763055 c
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274498 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128781 1 + 121039945 c
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345127 1 + 169600520 c
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335611 1 - 171882078 c
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5325577 1 -   6271500 C
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1800849 1 -   1987038 c
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21053881 1 -  24206276 c
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282909 1 -   1458659 c
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       717821 1 -    764599 C
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 192728 1 -   2853901 T
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493271 1 -   3282555 t
i saiBol1.JH378276          C 0 C 0
s micMur3.chr3                 911591 1 - 119751181 c
i micMur3.chr3              I 779 C 0
s proCoq1.NW_012149419v1       635157 1 -   2566024 c
i proCoq1.NW_012149419v1    C 0 C 0
s mm10.chr9                  55164982 1 + 124595110 C
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 36471 1 -  40214260 c
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              21564 1 -   2180720 t
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e cebCap1.NW_016107979v1       277143 1065 -   1024465 I
e otoGar3.GL873530            6751459 252 -  36342412 I

a score=510914.000000
s hg38.chr15_KI270850v1_alt    175888 40 +    430880 agcagatttatttttggcatttgacaaaatgactctaaaa
s panTro5.chr15              17985157 40 -  83230942 agcagatttatttttggcacttgacaaaatgactctaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211457 40 -  99763055 agcagatttatttttggcacttgacaaaatgactctaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274499 40 +    378907 AACAGATTTATTTTTGGCATTTGACAAAATGGCTCTAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128782 40 + 121039945 agcagatttatttttggcacttgccaaaatgactctaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345128 40 + 169600520 agcagatttatttttggaacttgacaaaatgactctaaag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335612 40 - 171882078 agcagatttatttttggcacttgacaaaacaattctaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5325578 40 -   6271500 AGCAGATTTATTTTTGGCACTTGACGAAGTGACTCTAAAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1800850 40 -   1987038 agcagatttatttttggaacttgacaaaatgactctaaag
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21053882 40 -  24206276 agcagatttatttttggcacttgacaaaacaattctaaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282910 40 -   1458659 agcagatttatttttggcacttgacaaaacaattctaaaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       717822 40 -    764599 AGAAGATTTATTTTTGGCACTTGACAAAACAACTCTAAAA
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 192729 40 -   2853901 AGCAGATTTACTTCTGGAACTTGACAAAGTGACTTGAACG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493272 40 -   3282555 agcagatttatttctggaacttgacaaagtgacttgaacg
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       278208 40 -   1024465 agcagatttatttctggaacttgacaaagtgactcgaacg
i cebCap1.NW_016107979v1    I 1065 C 0
s micMur3.chr3                 911592 39 - 119751181 agcaaatttatttttagaacttgacaaa-tgactctaaaa
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       635158 39 -   2566024 agcaaatttatttttggaacttgacaaa-tgactctaaaa
i proCoq1.NW_012149419v1    C 0 C 0
s mm10.chr9                  55164983 39 + 124595110 ATCATATTTGTTTCTGGTA-TTGTCAGAATGACTCAAGAA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 36472 40 -  40214260 aacagtcttatttttggaacttgacaaaatgagtctaaag
i canFam3.chr30             C 0 I 26
s dasNov3.JH569975              21565 40 -   2180720 gacagatttatttttggaactttacaaaattactctaaag
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       718130 6612 -   3745603 I
e otoGar3.GL873530            6751459 252 -  36342412 I

a score=471269.000000
s hg38.chr15_KI270850v1_alt    175928 39 +    430880 tttgtttagaagagtaaaTAATAAAAATT----------------AA-----TAAAGTAT-------------------
s panTro5.chr15              17985197 39 -  83230942 tttgtttagaagagtaaataataaaaaat----------------aa-----taaagTAT-------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211497 39 -  99763055 tttgtttagaagagtaaataataaaaaat----------------aa-----taaagtat-------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274539 39 +    378907 TTTGTTTAGAAGAGTAAATAATAAAAAAT----------------AA-----TAAAGTAT-------------------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128822 36 + 121039945 t---tttagaagagtaaataataaaaaat----------------aa-----taaagTAT-------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345168 39 + 169600520 tttgtttagaagagtaaataattaaaaat----------------aa-----taaagaGT-------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335652 39 - 171882078 tttgtttagaagagtaaataataaaaaat----------------aa-----tcaagTAT-------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5325618 39 -   6271500 TTTGTTTAGAAGAGTAAATAAAAAAAAGT----------------AA-----TAAAGTAT-------------------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1800890 39 -   1987038 tttgtttagaagagtaaataattaaaaat----------------aa-----taaagaGT-------------------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21053922 39 -  24206276 tttgtttagaagagtaaataataaaaaat----------------aa-----tcaagTAT-------------------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282950 39 -   1458659 tttgtttagaagagtaaataataaaaaat----------------aa-----tcaagTAT-------------------
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       717862 39 -    764599 TTTGTTTAGAAGAGTAAATAATAAAAAAT----------------AA-----TCAAGTAT-------------------
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 192769 39 -   2853901 TTTGTTTAAAAGAGTAAATAATAAAAAAT----------------AA-----TCAAGAAT-------------------
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493312 39 -   3282555 tttgtttaaaaaaataaataataaaaaat----------------aa-----taaagaAT-------------------
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       278248 39 -   1024465 tttgtttaaaagagtaaataataaaaaat----------------aa-----taaagaAT-------------------
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       724742 39 -   3745603 TTTGTTTAAAAGAGTAAATAATAAAAAAT----------------AA-----TAAAGAAT-------------------
i aotNan1.NW_018511953v1    I 6612 C 0
s micMur3.chr3                 911631 47 - 119751181 tttgtttagaagagtaaaTAATAAAAAAT----TTATAAAAAGGTAA-----TAAG-----------------------
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       635197 51 -   2566024 tttgtttagaagagtaaataataaaaaataAAATTATACAAAGGTAA-----TAAG-----------------------
i proCoq1.NW_012149419v1    C 0 C 0
s mm10.chr9                  55165022 30 + 124595110 --------------TAAGTAATAAAATAC----------------AAAAGTTTAAAAGGT-------------------
i mm10.chr9                 C 0 I 3
s canFam3.chr30                 36538 39 -  40214260 CTTGTTTTAAAGAGtaaataattaaaaaa----------------aa-----ttaaaaCT-------------------
i canFam3.chr30             I 26 I 6
s dasNov3.JH569975              21605 58 -   2180720 ttcttttggaagagtagatagtaaaaaat----------------aa-----gataaagttgaaaaaaaggtaatgagg
i dasNov3.JH569975          C 0 C 0
e otoGar3.GL873530            6751459 252 -  36342412 I

a score=1464180.000000
s hg38.chr15_KI270850v1_alt    175967 106 +    430880 AGACTCTTTCAACCAG-ATATTAAAT-----AAAATA---------TTGTGGACTAGCCCTG------------------GGCCAGACAGATAAAGGCAATGAAAGTTTAGAACCAGAGTCATGCAAATGAGAATTTAG
s panTro5.chr15              17985236 106 -  83230942 AGACTCTTTCAACCAG-ATATTAAAT-----AAAATA---------TTGTGGACTAGCCCTG------------------GGCCAGACAGATAAAGGTAATGGAAGTTTAAAACCAGAGTCATGCAAATAAGAATTTAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211536 106 -  99763055 agactctttcaaccag-atattaaat-----aaaata---------ttgtggactagccctg------------------ggccagacagataaaggtaatggaagtttaaaaccagagtcatgcaaatgagaatttac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274578 105 +    378907 AGACTCTTTCAACCAG-ATATTAAAT-----AAAATA---------TTGTGGACTAGCCCTG------------------GGCCAGACAGATAAAGGCAATGGAAGTTTAGAACCAGAGTCATGCAAA-GAGAATTTAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128858 106 + 121039945 AGACTCTTTCAATCAG-ATATTAAAT-----AAAATA---------TTGTGGACTAGCCCTG------------------GGTCAGACAGATAAAGGCAATGGAAGTTTAAAGCCAGAGTCATGCAAATGAGAATTTAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345207 106 + 169600520 AGACTTGTTCAACTAG-CTATTAAAT-----AAAATA---------TTGTGGACTAGCCCAG------------------GGCCAGACAGATAAAGGCAATGAAAGTTTAGAATCAGAGTCATGCAAATGAGAATTTAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335691 106 - 171882078 AGACTCTTTCAACCAG-ATATTAAAT-----AAAATA---------TTGTAGACTAGCCCTG------------------GGCCAGACAGATAAAGGCAATGGAAGTTTAGAACCAGAGTCATGCAAATGAGAATTTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5325657 104 -   6271500 AGACTC--TCAACCAG-ATATTAAAT-----AAAATA---------TTGTGGACTAGCCCTG------------------GGCCAGACACATAAAGGCAATGGACATTTAGAACCAGAGTCATGCAAAAGAGAATTTAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1800929 106 -   1987038 AGACTTGTTCAACCAG-CTATTAAAT-----AAAATA---------TTGTGGACTAGCCCTG------------------GGCCAGACAAATAAAGGCAATGAAAGTTTAGAATCAGAGTCATGCAAATGAGAATTTAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21053961 106 -  24206276 AGACTCTTTCAACCAG-ATATTAAAT-----AAAATA---------TTGTAGACTAGCCCTG------------------GGCCAGACAGATAAAGGCAATGGAAGTTTAGAACCAGAATCATGCAAATGAGAATTTAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       282989 106 -   1458659 AGACTCTTTCAACTAG-ATATTAAAT-----AAAATA---------TTGTAGACTAGCCCTG------------------GGCCAGACAGATAAAGGCAATGGAAGTTTAGAACCAGAGTCATGCAAATGAGAATTTAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       717901 106 -    764599 AGACTCTTTCAACCAG-ATATTAAAT-----AAAATA---------TTGTAGACTAGCCCTG------------------GGCCAGACAGATAAAGGCAATGGAAGTTTAGAACCAGAGTCATGCAAATGAGAATTTAA
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 192808  97 -   2853901 ATACTTGTTCAACCAG-GTATT----------AAATG---------TTGTGTA----CCCTG------------------GCCCAGACATATTCAGGCAATGAAAATGTAGAAACAGAGTCATACAAATAAGAATTTAG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493351 102 -   3282555 AGACTTGTTCAACCAG-GTGTTAAAT-----AAAATG---------TTGCGTA----CCCTG------------------GCCCAGACATATACAGGCAATGAAAATTTAGAAACAGAGTCATGCAAATGAGAATTTAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       278287 102 -   1024465 AGACTTGTTCAACCAG-GTGTTAAAT-----AAAATG---------TTGTGTA----CCCTG------------------GCCCAGACATATACAGGCAATGAAAATTTAGAAACAGAGTCATGCAAATGAGAATTTAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       724781 102 -   3745603 AGACTTGTTCAACCAG-GTGTTAAAT-----AAAATG---------TTGTGTA----CCCTG------------------GCCCAGACATATACAGGCAATGAAAATTTAGAAACAGAGTCATGCAAATGAGAATTTAG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 911678 106 - 119751181 AGACTTGCCCAACTCG-ATGTTAAAC-----ACGATA---------TTGTGTACTGGCCCTG------------------TGCCAGACAGATAAAGGCAAGAGAAATTTAGAGCCAGAGTCACGCAAATGAGAATTTAG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       635248 106 -   2566024 AGACTTGCCCAACTAG-ATGTTAAAT-----AAGATA---------CTGTGTACTGGCCCTG------------------TACCAGACAGAGAAAGGCAAGAGAAGCTTAGAACCAGAGTCACGCAAATGAGAATTTAG
i proCoq1.NW_012149419v1    C 0 I 41
s otoGar3.GL873530            6751711 115 -  36342412 agacggtctcaaaaaa-aaaaaaaaa-----aaaaaAAAGGAAAACTTATGTACTCGTCCTG------------------CACCAGACCAATAAAGGCAATAGAAGTTTAGAACTAGAGTCATGCAAATGAGAATTTAG
i otoGar3.GL873530          I 252 I 92
s mm10.chr9                  55165055  98 + 124595110 AAATTTGCCCAAACAGTAAATGAAAT-----AAAATA---------TTAACTATTAGAACTA------------------GACCA-------ACAGGCAATAGAAATTTAGAAACAG--CCATGCAAATGACAATTTAG
i mm10.chr9                 I 3 C 0
s canFam3.chr30                 36583 100 -  40214260 AGACTTGTCCAATTAG-ATATTAAATA----AAAATA---------TTACGTACTGGCGTTG------------------GACTGGACAGAT--AGACAAT---AGTTTAGA--CACAGTCATGCAATTGAGAATTCAG
i canFam3.chr30             I 6 C 0
s dasNov3.JH569975              21663 129 -   2180720 agaattgcccaaccac-atactaaataacataaaata---------ttgtgtcctgacaatggaacagacagtgacaatcgaccagacaaataaaggcagtagaagtttagtcacagagccatgcaaatgagaatttag
i dasNov3.JH569975          C 0 C 0

a score=416720.000000
s hg38.chr15_KI270850v1_alt    176073 43 +    430880 TGTAAGGAAAAGGTGGTGCTTTAACTTAGTAGTGAAAAGACAG
s panTro5.chr15              17985342 43 -  83230942 TATAAGGAAAAGGTGGTGTTTTAACTTACTAGTGAAAAGATAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211642 43 -  99763055 tataaggaaaaggtggtgttttaacttactagtgaaaagatag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274683 43 +    378907 TGTAAGGAAAAGGTGGTGCTTTAACTTAGTAGTGAAAAGACAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102128964 43 + 121039945 TATAAGGAAAAGGTGGTATTTTAACTTAATAGTGAAAAGACAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345313 43 + 169600520 TATAAGGAAAAGGTGATATTTTAACTAAATAGGGAAAAAATAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335797 43 - 171882078 TATAAGGAAAAGGTGATATTTTACCTTCATAGTGAAAAGATAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5325761 28 -   6271500 TATAAGGAAAAGATGGTATTTTAACTTA---------------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1801035 43 -   1987038 TATAAGGAAAAGGTGATATTTTAACTAAATAGGGAAAAAATAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054067 43 -  24206276 TATAAGGAAAAGGTGATATTTTACCTTCATAGTGAAAAGATAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283095 43 -   1458659 TATAAGGAAAAGGTGGTATTTTACCTTCATAGTGAAAAGATAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718007 43 -    764599 TATAAGGAAAAGGTGGTATTTTACCTTAATAGTGAAAAGATAG
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 192905 43 -   2853901 TATAAGGTAAAGGTGGTATTTTAACTCAACAAGAAAAGGATAC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493453 43 -   3282555 TATAAGGTAAAGGTGGTATTTTAACTTAATAAGAAAAGGATAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       278389 43 -   1024465 TATAAGGTAAAGGTGGTATTTTAACTTAATAAGAAAAGGATAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       724883 43 -   3745603 TATAAGGTAAAAGTGGTATTTTAACTTAATAAGAAAAGGATAG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 911784 43 - 119751181 AATAAAATAAAGGTGGTATTTTAATTCAGTAAAGAGTGGATAG
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6751918 38 -  36342412 AATAAAGTAAAGG-GGTATTTTAATTCAATAAAGAATAG----
i otoGar3.GL873530          I 92 C 0
s mm10.chr9                  55165153 37 + 124595110 -AATAAGTAAAGCTGGCGTTTTAACCCAGGAAGGAAGA-----
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 36683 26 -  40214260 --------------AGTAAGTTAAAACACTCAAAGAAACA---
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              21792 43 -   2180720 aatgtagtaagggtggtattttaactcaatagggaaagggaag
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       635354 41 -   2566024 I

a score=132782.000000
s hg38.chr15_KI270850v1_alt    176116 9 +    430880 ATTATTCTG
s panTro5.chr15              17985385 9 -  83230942 ATTATTCTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211685 9 -  99763055 attattcta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274726 9 +    378907 ATTATTCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129007 9 + 121039945 ATTATTCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345356 9 + 169600520 ATTATTCTg
i rheMac8.chr7              C 0 I 306
s macFas5.chr7              107335840 9 - 171882078 ATTATTCTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1801078 9 -   1987038 ATTATTCTg
i cerAty1.NW_012002657v1    C 0 I 309
s chlSab2.chr29              21054110 9 -  24206276 ATTATTCTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283138 9 -   1458659 ATTATTCTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718050 9 -    764599 ATTATTCTG
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 192948 9 -   2853901 ATTATTCTG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493496 9 -   3282555 ATTATTCTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       278432 9 -   1024465 ATTATTCTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       724926 9 -   3745603 ATTATTCCG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 911827 9 - 119751181 ATTATTCCA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       635395 9 -   2566024 ATTATTCCA
i proCoq1.NW_012149419v1    I 41 C 0
s otoGar3.GL873530            6751956 9 -  36342412 ATTATTCCG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55165190 9 + 124595110 ATCTTTCTA
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              21835 9 -   2180720 attattcta
i dasNov3.JH569975          C 0 C 0
e canFam3.chr30                 36709 0 -  40214260 C
e macNem1.NW_012011056v1      5325789 0 -   6271500 C

a score=78750.000000
s hg38.chr15_KI270850v1_alt    176125 8 +    430880 TAAATAGT
s panTro5.chr15              17985394 8 -  83230942 TAAATAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211694 8 -  99763055 taaatagt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274735 8 +    378907 TAAATAGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129016 8 + 121039945 TAAATAGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107335849 8 - 171882078 TAAATAGT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21054119 8 -  24206276 TAAATAGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283147 8 -   1458659 TTAATAGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718059 8 -    764599 TAAACAGT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 192957 8 -   2853901 TGAATAGT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493505 8 -   3282555 TAAATAGT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       278441 8 -   1024465 TAAATAGT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       724935 8 -   3745603 TAAATAGT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 911836 8 - 119751181 TAAATAGT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       635404 8 -   2566024 TAAATAGT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6751965 7 -  36342412 TAAATAG-
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55165199 8 + 124595110 TAGATAAT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 36709 1 -  40214260 ----C---
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              21844 8 -   2180720 tagatagt
i dasNov3.JH569975          C 0 C 0
e cerAty1.NW_012002657v1      1801087 309 -   1987038 I
e macNem1.NW_012011056v1      5325789 0 -   6271500 C
e rheMac8.chr7               60345365 306 + 169600520 I

a score=228687.000000
s hg38.chr15_KI270850v1_alt    176133 20 +    430880 TTTAGGAGAACTGGCCATTT
s panTro5.chr15              17985402 20 -  83230942 TTTAGGAGAACTGGCCATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211702 20 -  99763055 tttaggagaactggccattt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274743 20 +    378907 TTTAGGAGAACTGGCCATTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129024 20 + 121039945 TTTAGGAGAACTGGCCATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345671 20 + 169600520 TTTAGGAGAACTGACCCTTT
i rheMac8.chr7              I 306 C 0
s macFas5.chr7              107335857 20 - 171882078 TTTAGGAGAACTGGCCATTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1801396 20 -   1987038 TTTAGGAGAACTGACCCTTT
i cerAty1.NW_012002657v1    I 309 C 0
s chlSab2.chr29              21054127 20 -  24206276 TTTAGGAGAACTGGCCATTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283155 20 -   1458659 TTTAGGAGAACTGGCCATTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718067 20 -    764599 TTTAGGAGAACTGGCCATTT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 192965 20 -   2853901 CTTAGGAGAACCGACTGTTT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493513 20 -   3282555 CTTAGGAGAACCGACCATTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       278449 20 -   1024465 CTTAGGAGAACCGACCGTTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       724943 20 -   3745603 CTTAGGAGAACTGACCGTTT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 911844 20 - 119751181 TTTGGGAGCACTGGCCATTT
i micMur3.chr3              C 0 I 41
s proCoq1.NW_012149419v1       635412 20 -   2566024 TTTGGGAGCACTGGCCATTT
i proCoq1.NW_012149419v1    C 0 I 41
s otoGar3.GL873530            6751972 20 -  36342412 TTGGAGAGCACTGGCCATTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55165207 17 + 124595110 TTT---AGAACTGGCCATTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 36710  9 -  40214260 TTAAGGATA-----------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              21852  7 -   2180720 ---------attggTA----
i dasNov3.JH569975          C 0 C 0
e macNem1.NW_012011056v1      5325789  0 -   6271500 C

a score=559143.000000
s hg38.chr15_KI270850v1_alt    176153 59 +    430880 GAGGAAGTT-TGAGTC-TTAACTCCA-ATTTTTGTCAAAATAAGTTGTA-GTTGGTTTAAACA
s panTro5.chr15              17985422 59 -  83230942 GAGGAAGTT-TGAGTC-TTAACTTCA-GTTTTTGTCAAAATAAGTTGTA-GTAGGTTTAAACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211722 59 -  99763055 gaggaagtt-tgagtc-ttaacttcA-ATTTTTGTCAAAATAAGTTGTA-GTAGGTTTAAACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274763 59 +    378907 GAGGAAGTT-TGAGTC-TTAACTCCA-ATTTTTGTCAAAATAAGTTGTA-GTTGGTTTAAACA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129044 59 + 121039945 GAGGAAGTT-TGAGTC-TTAACTTCA-ATTTTCGTCAAAATAAGTTGTA-ATTGGTTTAAACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345691 59 + 169600520 GAGGAATTT-TGAGTC-TTAACTCTA-ATTTTTGTCAAAATAAGTTATA-GTTGGTTTAAACG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335877 59 - 171882078 GTGGAAGTT-TGAGTC-TTAACTTCA-GTTTTTGTCAAAATAAGTTATA-GTTAGTTTAAACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5325789 32 -   6271500 ------------------------------TTTGTCAAAATAAGTTAGA-GTTGGTTTAAACA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1801416 59 -   1987038 GAGGAATTT-TGAGTC-TTAACTCTA-ATTTTTGTCAAAATAAGTTATA-ATTGGTTTAAACG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054147 59 -  24206276 GTGGAAGTT-TGAGTC-TTAACTTCA-GTTTTTGTCAAAATAAGTTATA-GTTAGTTTAAACA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283175 59 -   1458659 GTGGAAGTT-TGAGTC-TTAACTTCA-GTTTTTGTCAAAATAAGTTATA-GTTAGTTTAAACA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718087 59 -    764599 GTGGAAGTT-TGAGTC-TTAACTTCA-GTTTTTGTCAAAATAAGTTATA-GTTAGTTTAAACA
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 192985 57 -   2853901 GAGGATGTT-TGAGTC---AACTCTG-ATTTTTGTCAAAATAAGTTGCA-GTTGGTTTAAACA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493533 57 -   3282555 GAGGACGTT-TGAGTC---AACTCTG-ATTTTTGTCAAAATAAGTTGCA-GTTGGTTTAAACA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       278469 57 -   1024465 GAGGATTTT-TGAGTC---AACTCTG-ATTTTTGTCAAAATAAGTTGCA-GTTGGTTTAAACA
i cebCap1.NW_016107979v1    C 0 I 542
s aotNan1.NW_018511953v1       724963 57 -   3745603 GAGGATGTT-TGAGTC---AACTCTG-ATTTTTGTCAAAATAAGTTGCA-GTTGGTTTAAACA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6751992 62 -  36342412 GGGAACGTTAAAAGTC-TGAACTCAAGATTTTTGTCAAAATATGTTATAGGTTGTTTTAAACA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55165224 53 + 124595110 TGGGAACTT-AGACTCTTTAGCTCTT-TGTCTTGTCAAG-------GTA-AATGGTTTAAACA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 36719 59 -  40214260 GGGGAAGTT-AGAATC-TTACCTCAG-ATTCTTGTCAAAATAAGTGATG-GGTGGCTTAAACA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              21859 27 -   2180720 ----------------------------TTTTTGTAAAAATA--------AATGGTTTAAGCA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 911864 41 - 119751181 I
e proCoq1.NW_012149419v1       635432 41 -   2566024 I

a score=117306.000000
s hg38.chr15_KI270850v1_alt    176212 9 +    430880 CATCTATTC
s panTro5.chr15              17985481 9 -  83230942 CATCTATTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211781 9 -  99763055 CATCTATTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274822 9 +    378907 CATCTATTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129103 9 + 121039945 CATCTATTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345750 9 + 169600520 CATCTATTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335936 9 - 171882078 CATCTATTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5325821 9 -   6271500 CATCTATTC
i macNem1.NW_012011056v1    C 0 M 8960
s cerAty1.NW_012002657v1      1801475 9 -   1987038 CATCTATTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054206 9 -  24206276 CATCTATTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283234 9 -   1458659 CATCTATTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718146 9 -    764599 CATCTATTC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 193042 9 -   2853901 CATCTAGTT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493590 9 -   3282555 CATCTAGTT
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       725020 9 -   3745603 CATCTAGTT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6752054 9 -  36342412 CATCTATTC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55165277 5 + 124595110 ----TGTTC
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 36778 9 -  40214260 CATCTATTC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              21886 9 -   2180720 CATCTATTC
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 911864 41 - 119751181 I
e proCoq1.NW_012149419v1       635432 41 -   2566024 I
e cebCap1.NW_016107979v1       278526 542 -   1024465 I

a score=91161.000000
s hg38.chr15_KI270850v1_alt    176221 12 +    430880 TTAAAAATTAGA
s panTro5.chr15              17985490 12 -  83230942 TTAAAAATTAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211790 12 -  99763055 TTAAAAATTAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274831 12 +    378907 TTAAAAATTAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129112 12 + 121039945 TTAAAAATTAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345759 12 + 169600520 TTAAAAATAAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335945 12 - 171882078 TTAAATATTAGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1801484 12 -   1987038 TTAAAAATAAGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054215 12 -  24206276 TTAAAAATTAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283243 12 -   1458659 TTAAATATTAGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718155 12 -    764599 TTAAAAATTAGA
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 193051 12 -   2853901 TTAAAAATAAGA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493599 12 -   3282555 TTAAAAGTAAGA
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       725029 12 -   3745603 TTAAAAATAAGA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6752063  6 -  36342412 TTAAGA------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55165282 12 + 124595110 TTAAAATTAAGA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 36787 12 -  40214260 CTAAAATTAACA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              21895  7 -   2180720 TCAGAGA-----
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 911864 41 - 119751181 I
e proCoq1.NW_012149419v1       635432 41 -   2566024 I
e cebCap1.NW_016107979v1       278526 542 -   1024465 I
e macNem1.NW_012011056v1      5325830 8960 -   6271500 M

a score=32796.000000
s hg38.chr15_KI270850v1_alt    176233 3 +    430880 ACA
s panTro5.chr15              17985502 3 -  83230942 ACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211802 3 -  99763055 ACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274843 3 +    378907 ACA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129124 3 + 121039945 ACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345771 3 + 169600520 ACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335957 3 - 171882078 AGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1801496 3 -   1987038 ACA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054227 3 -  24206276 AGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283255 3 -   1458659 AGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718167 3 -    764599 AGA
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 193063 3 -   2853901 ACA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493611 3 -   3282555 ACA
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       725041 3 -   3745603 ACA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 911905 3 - 119751181 ACA
i micMur3.chr3              I 41 C 0
s proCoq1.NW_012149419v1       635473 3 -   2566024 ACA
i proCoq1.NW_012149419v1    I 41 C 0
s otoGar3.GL873530            6752069 3 -  36342412 ACA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55165294 3 + 124595110 ACA
i mm10.chr9                 C 0 I 136
s canFam3.chr30                 36799 3 -  40214260 GCA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              21902 3 -   2180720 ACT
i dasNov3.JH569975          C 0 C 0
e cebCap1.NW_016107979v1       278526 542 -   1024465 I
e macNem1.NW_012011056v1      5325830 8960 -   6271500 M

a score=30465.000000
s hg38.chr15_KI270850v1_alt    176236 2 +    430880 GA
s panTro5.chr15              17985505 2 -  83230942 GA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211805 2 -  99763055 GA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274846 2 +    378907 GA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129127 2 + 121039945 GA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345774 2 + 169600520 GA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335960 2 - 171882078 GA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1801499 2 -   1987038 GA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054230 2 -  24206276 GA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283258 2 -   1458659 GA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718170 2 -    764599 GA
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 193066 2 -   2853901 GA
i calJac3.chrY              C 0 I 290
s saiBol1.JH378276             493614 2 -   3282555 GA
i saiBol1.JH378276          C 0 I 292
s aotNan1.NW_018511953v1       725044 2 -   3745603 GA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 911908 2 - 119751181 GA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       635476 2 -   2566024 GA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6752072 2 -  36342412 GA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 36802 2 -  40214260 GA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              21905 2 -   2180720 GG
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55165297 136 + 124595110 I
e cebCap1.NW_016107979v1       278526 542 -   1024465 I
e macNem1.NW_012011056v1      5325830 8960 -   6271500 M

a score=23880.000000
s hg38.chr15_KI270850v1_alt    176238 2 +    430880 AG
s panTro5.chr15              17985507 2 -  83230942 AG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211807 2 -  99763055 AG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274848 2 +    378907 AG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129129 2 + 121039945 AG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345776 2 + 169600520 AG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335962 2 - 171882078 AG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1801501 2 -   1987038 AG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054232 2 -  24206276 AG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283260 2 -   1458659 AG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718172 2 -    764599 AG
i colAng1.NW_012118866v1    C 0 C 0
s aotNan1.NW_018511953v1       725046 2 -   3745603 Ag
i aotNan1.NW_018511953v1    C 0 I 863
s micMur3.chr3                 911910 2 - 119751181 AG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       635478 2 -   2566024 AG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6752074 2 -  36342412 AG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 36804 2 -  40214260 AG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              21907 2 -   2180720 AA
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55165297 136 + 124595110 I
e calJac3.chrY                 193068 290 -   2853901 I
e cebCap1.NW_016107979v1       278526 542 -   1024465 I
e macNem1.NW_012011056v1      5325830 8960 -   6271500 M
e saiBol1.JH378276             493616 292 -   3282555 I

a score=70852.000000
s hg38.chr15_KI270850v1_alt    176240 12 +    430880 AACATCGATTTG
s panTro5.chr15              17985509 12 -  83230942 AACATTGGTTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211809 12 -  99763055 AACATTGGTTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274850 12 +    378907 AACATCGATTTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129131 12 + 121039945 AACATCGGTCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345778 12 + 169600520 AACATCAGTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335964 12 - 171882078 AACTTCAGTTGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1801503 12 -   1987038 AACATCAGTTTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054234 12 -  24206276 AACTTCAGTTCG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283262 12 -   1458659 AACTTCAGTTGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718174 12 -    764599 AACTTCAGTTGG
i colAng1.NW_012118866v1    C 0 C 0
s micMur3.chr3                 911912 12 - 119751181 AATATCAGTTTG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       635480 12 -   2566024 AACATCAGTTTG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6752076 12 -  36342412 GACATCAATTTG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 36806 11 -  40214260 -AAATCAGTTGA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              21909 10 -   2180720 AACA--AGTTTG
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       725048 863 -   3745603 I
e mm10.chr9                  55165297 136 + 124595110 I
e calJac3.chrY                 193068 290 -   2853901 I
e cebCap1.NW_016107979v1       278526 542 -   1024465 I
e macNem1.NW_012011056v1      5325830 8960 -   6271500 M
e saiBol1.JH378276             493616 292 -   3282555 I

a score=240746.000000
s hg38.chr15_KI270850v1_alt    176252 21 +    430880 ----AAGATATTTTAAGAGTTAAGG
s panTro5.chr15              17985521 21 -  83230942 ----AAGATATTTTAAGAATTAAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211821 21 -  99763055 ----AAGATATTTTAAGAGTTAAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274862 21 +    378907 ----AAGATATTTTAAGAGTTAAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129143 21 + 121039945 ----AAGATATTTTAAGAGTTAAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345790 21 + 169600520 ----AAGATATTTTAAGAGTTAAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335976 21 - 171882078 ----ACGATATTTTAAGAGTTAAGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1801515 21 -   1987038 ----AAGATATTTTAAGAGTTAAGG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054246 21 -  24206276 ----ACGATATTTTAAGAGTTAAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283274 21 -   1458659 ----ATGATATTTTAAGAGTTAAGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718186 21 -    764599 ----ATGATATTTTAAGAGTTAAGG
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 193358 21 -   2853901 ----aaGACACTTTAAGAGTTAAGG
i calJac3.chrY              I 290 C 0
s saiBol1.JH378276             493908 21 -   3282555 ----aaGACACTTTAAGAGTTAAGG
i saiBol1.JH378276          I 292 C 0
s micMur3.chr3                 911924 21 - 119751181 ----AAGATATTTTAAGAGTTGAGG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       635492 21 -   2566024 ----AAGATATTTTAGGAGTTAAGG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6752088 21 -  36342412 ----AATATATTTTAAGAGTTAAGG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 36817 21 -  40214260 ----AGAGTATTTTAAGAGTAGAGA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              21919 25 -   2180720 GCGAGCATTATTTTAAGAGTTATGG
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       725048 863 -   3745603 I
e mm10.chr9                  55165297 136 + 124595110 I
e cebCap1.NW_016107979v1       278526 542 -   1024465 I
e macNem1.NW_012011056v1      5325830 8960 -   6271500 M

a score=37480.000000
s hg38.chr15_KI270850v1_alt    176273 3 +    430880 CTG
s panTro5.chr15              17985542 3 -  83230942 CTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211842 3 -  99763055 CTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274883 3 +    378907 CTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129164 3 + 121039945 CTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345811 3 + 169600520 CTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107335997 3 - 171882078 CTA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1801536 3 -   1987038 CTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054267 3 -  24206276 CTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283295 3 -   1458659 CTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718207 3 -    764599 CTG
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 193379 3 -   2853901 CTG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493929 3 -   3282555 CTG
i saiBol1.JH378276          C 0 C 0
s micMur3.chr3                 911945 3 - 119751181 CTG
i micMur3.chr3              C 0 I 82
s proCoq1.NW_012149419v1       635513 3 -   2566024 CTG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6752109 3 -  36342412 CTG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 36838 3 -  40214260 CTG
i canFam3.chr30             C 0 C 0
e aotNan1.NW_018511953v1       725048 863 -   3745603 I
e mm10.chr9                  55165297 136 + 124595110 I
e dasNov3.JH569975              21944 0 -   2180720 C
e cebCap1.NW_016107979v1       278526 542 -   1024465 I
e macNem1.NW_012011056v1      5325830 8960 -   6271500 M

a score=572896.000000
s hg38.chr15_KI270850v1_alt    176276 95 +    430880 Aggctgggcacagtggttcacgcctgtaatcccagcacttt-caaggccaagttgggaggattgcttgagcccaggagtttgagatcagcctgggc
s panTro5.chr15              17985545 95 -  83230942 Aggctgggcacagtggttcacacctgtaatcccagcacttt-caaggccaaggtgggaagattgcttgaactcaggagtttgagatcagcctgggc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211845 95 -  99763055 Aggctgggcacagtggttcacacctgtaatcccagcacttt-caaggccaaggtgggaagattgcttgagctcaggagtttgagatcagcctgggc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274886 95 +    378907 Aggctgggcacagtggttcacgcctgtaatcccagcacttt-caaggccaagttgggaggattgcttgagcccaggagtttgagatcagcctgggc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129167 95 + 121039945 Aggctgggcacagtgattcacacttgtaatcccagcagttt-caaggccaaggtgggaggattgcttgagcccaggagtttgagatcagcctgggc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345814 96 + 169600520 Aggctgggcaaagtggttcacatctgtaatcccagcactttgcgaggccgaggtgggaggattgcttgagcccaggcgtttgagatcagcctgggc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107336000 96 - 171882078 Aggctgggcacagtggttcatgcctgtaatcccaggactttttgaggccaagatgggaggattgcttgagcccaggagtttgagatcagcctgagc
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1801539 96 -   1987038 Aggctgggcaaagtggttcacacctgtaatcccagcactttgcgaggccgaggtgggaggattgcttgagcccaggcatttgagatcagcttgggc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054270 96 -  24206276 Aggctgggcacagtggttcatgcctgtaatcccagcacttttcgaggccaagatgggaggattgcttgagcccaggagttcgagatcagcctgagc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283298 96 -   1458659 Aggctgcgcacagtggttcatgcctgtaatcccaggacttttcgaggccaagatgggaggattgcttgagcccaggagtttgagatcagcctgagc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718210 96 -    764599 Aggctaggcacagtggttcatgcctgtaatcccagcactttttgaggccaaggtgggaggattgcttgagcccaggagttcgagatcagcctgggc
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 193382 95 -   2853901 Aggctggctgcagtggttcacgcctataatcccagcattttgggagactaaagtgggagaaatgcctgagcctaggagtttgagattagcctgag-
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             493932 96 -   3282555 Aggctggttgcagtggttcacacctgtaatcccagcactttgggagactgaagtgggagaagtgcttgagcctaggagtttgagatcagcctggga
i saiBol1.JH378276          C 0 C 0
e micMur3.chr3                 911948 82 - 119751181 I
e proCoq1.NW_012149419v1       635516  0 -   2566024 C
e aotNan1.NW_018511953v1       725048 863 -   3745603 I
e mm10.chr9                  55165297 136 + 124595110 I
e dasNov3.JH569975              21944  0 -   2180720 C
e canFam3.chr30                 36841  0 -  40214260 C
e cebCap1.NW_016107979v1       278526 542 -   1024465 I
e otoGar3.GL873530            6752112  0 -  36342412 C
e macNem1.NW_012011056v1      5325830 8960 -   6271500 M

a score=101421.000000
s hg38.chr15_KI270850v1_alt    176371 17 +    430880 aacatagcaagactctc
s panTro5.chr15              17985640 17 -  83230942 aacataacaagactctc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211940 17 -  99763055 aacataacaagactctc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274981 17 +    378907 aacatagcaagactctc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129262 17 + 121039945 aacatagcaagactctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345910 17 + 169600520 aacatagtaagtctctc
i rheMac8.chr7              C 0 I 26
s macFas5.chr7              107336096 17 - 171882078 aacatagcaagactctc
i macFas5.chr7              C 0 I 4
s cerAty1.NW_012002657v1      1801635 17 -   1987038 aacatagtaagtctctc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054366 17 -  24206276 aacatagcaagactctc
i chlSab2.chr29             C 0 I 10
s manLeu1.NW_012105520v1       283394 17 -   1458659 aacatagcaagactctc
i manLeu1.NW_012105520v1    C 0 I 6
s colAng1.NW_012118866v1       718306 17 -    764599 aacataacaagactctc
i colAng1.NW_012118866v1    C 0 I 6
s calJac3.chrY                 193477 17 -   2853901 aatgcagcaaatctctc
i calJac3.chrY              C 0 I 56
s saiBol1.JH378276             494028 17 -   3282555 aatgtagcaagTCAGTC
i saiBol1.JH378276          C 0 I 14
s mm10.chr9                  55165433 17 + 124595110 cacatgGCATCCCTCGC
i mm10.chr9                 I 136 C 0
e micMur3.chr3                 911948 82 - 119751181 I
e proCoq1.NW_012149419v1       635516  0 -   2566024 C
e aotNan1.NW_018511953v1       725048 863 -   3745603 I
e dasNov3.JH569975              21944  0 -   2180720 C
e canFam3.chr30                 36841  0 -  40214260 C
e cebCap1.NW_016107979v1       278526 542 -   1024465 I
e otoGar3.GL873530            6752112  0 -  36342412 C
e macNem1.NW_012011056v1      5325830 8960 -   6271500 M

a score=9555.000000
s hg38.chr15_KI270850v1_alt    176388 1 +    430880 t
s panTro5.chr15              17985657 1 -  83230942 t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211957 1 -  99763055 t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274998 1 +    378907 t
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129279 1 + 121039945 t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345953 1 + 169600520 t
i rheMac8.chr7              I 26 C 0
s macFas5.chr7              107336117 1 - 171882078 t
i macFas5.chr7              I 4 C 0
s macNem1.NW_012011056v1      5334882 1 -   6271500 T
i macNem1.NW_012011056v1    M 8960 C 0
s cerAty1.NW_012002657v1      1801652 1 -   1987038 t
i cerAty1.NW_012002657v1    C 0 I 83
s chlSab2.chr29              21054393 1 -  24206276 T
i chlSab2.chr29             I 10 C 0
s manLeu1.NW_012105520v1       283417 1 -   1458659 T
i manLeu1.NW_012105520v1    I 6 C 0
s colAng1.NW_012118866v1       718329 1 -    764599 T
i colAng1.NW_012118866v1    I 6 C 0
s calJac3.chrY                 193550 1 -   2853901 t
i calJac3.chrY              I 56 I 22
s saiBol1.JH378276             494059 1 -   3282555 t
i saiBol1.JH378276          I 14 I 10
s mm10.chr9                  55165450 1 + 124595110 T
i mm10.chr9                 C 0 C 0
e micMur3.chr3                 911948 82 - 119751181 I
e proCoq1.NW_012149419v1       635516 0 -   2566024 C
e aotNan1.NW_018511953v1       725048 863 -   3745603 I
e dasNov3.JH569975              21944 0 -   2180720 C
e canFam3.chr30                 36841 0 -  40214260 C
e cebCap1.NW_016107979v1       278526 542 -   1024465 I
e otoGar3.GL873530            6752112 0 -  36342412 C

a score=143469.000000
s hg38.chr15_KI270850v1_alt    176389 43 +    430880 ctc--------------tCtagatatagatatacatataaat----a----------tacatatagagata
s panTro5.chr15              17985658 55 -  83230942 ctctCTCTCTCTCTCTTTCtagatatacatatacatataaac----a----------cacatac--acata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17211958 53 -  99763055 ctc--tCTCTCTCTCTTTCtagatatacatatacatataaac----a----------cacatac--acata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       274999 43 +    378907 ctc--------------tCtagatatagatatacatataaat----a----------tacatatagagata
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129280 47 + 121039945 ctc----------tCTCTCtagatatagatatacatataaat----a----------cacatatacagata
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60345954 43 + 169600520 ctc--------------tgtctctctctctctctctctgGAT----a----------tacatatacaaata
i rheMac8.chr7              C 0 I 9
s macFas5.chr7              107336118 43 - 171882078 CTC--------------TCTAGatatagatatacatataaat----a----------tacatatacatata
i macFas5.chr7              C 0 I 5
s macNem1.NW_012011056v1      5334883 43 -   6271500 CTC--------------TCtagatatagacatacctataaat----a----------tacatatacaaata
i macNem1.NW_012011056v1    C 0 I 4
s chlSab2.chr29              21054394 43 -  24206276 CTC--------------TCtagatatagatatacatataaat----a----------tacatatactagta
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283418 43 -   1458659 CTC--------------TCtagatatagatatacatataaat----a----------tacatatacaagta
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718330 43 -    764599 CTC--------------TCtagatatagatatacgtataaat----a----------tacatatacaagta
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 193573 53 -   2853901 ctc--------------tctTTATAGacacacacacacgtat----atttatttatgtacacacacacaca
i calJac3.chrY              I 22 I 2
s saiBol1.JH378276             494070 43 -   3282555 ctc--------------tccacacacacacacacacacacac----a----------cacacacacacaca
i saiBol1.JH378276          I 10 I 2
s mm10.chr9                  55165451 47 + 124595110 CTC--------------CCAACCTCCATAAGTGTAAAGAAGTTCTAA----------AACAATGAAGAATA
i mm10.chr9                 C 0 C 0
e micMur3.chr3                 911948 82 - 119751181 I
e proCoq1.NW_012149419v1       635516  0 -   2566024 C
e aotNan1.NW_018511953v1       725048 863 -   3745603 I
e dasNov3.JH569975              21944  0 -   2180720 C
e canFam3.chr30                 36841  0 -  40214260 C
e cebCap1.NW_016107979v1       278526 542 -   1024465 I
e otoGar3.GL873530            6752112  0 -  36342412 C
e cerAty1.NW_012002657v1      1801653 83 -   1987038 I

a score=-1564.000000
s hg38.chr15_KI270850v1_alt    176432 4 +    430880 caAA-
s panTro5.chr15              17985713 3 -  83230942 C-AA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17212011 3 -  99763055 C-AA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275042 4 +    378907 caAA-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129327 4 + 121039945 caAA-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346006 4 + 169600520 aaaa-
i rheMac8.chr7              I 9 C 0
s macFas5.chr7              107336166 4 - 171882078 ACAA-
i macFas5.chr7              I 5 C 0
s macNem1.NW_012011056v1      5334930 4 -   6271500 AAAA-
i macNem1.NW_012011056v1    I 4 C 0
s cerAty1.NW_012002657v1      1801736 4 -   1987038 aaaa-
i cerAty1.NW_012002657v1    I 83 C 0
s chlSab2.chr29              21054437 3 -  24206276 -caA-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283461 3 -   1458659 -caA-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718373 3 -    764599 -caA-
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 193628 4 -   2853901 caAA-
i calJac3.chrY              I 2 I 1
s saiBol1.JH378276             494115 4 -   3282555 caAA-
i saiBol1.JH378276          I 2 I 1
s mm10.chr9                  55165498 4 + 124595110 -TAAG
i mm10.chr9                 C 0 I 14
e micMur3.chr3                 911948 82 - 119751181 I
e proCoq1.NW_012149419v1       635516 0 -   2566024 C
e aotNan1.NW_018511953v1       725048 863 -   3745603 I
e dasNov3.JH569975              21944 0 -   2180720 C
e canFam3.chr30                 36841 0 -  40214260 C
e cebCap1.NW_016107979v1       278526 542 -   1024465 I
e otoGar3.GL873530            6752112 0 -  36342412 C

a score=47858.000000
s hg38.chr15_KI270850v1_alt    176436 5 +    430880 AAAAG
s panTro5.chr15              17985716 5 -  83230942 AATAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17212014 5 -  99763055 AATAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275046 5 +    378907 AAAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129331 5 + 121039945 AAAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346010 5 + 169600520 aaaaG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107336170 5 - 171882078 AAAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5334934 5 -   6271500 AAAAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1801740 5 -   1987038 aaaGG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054440 5 -  24206276 AAAAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283464 5 -   1458659 AAAAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718376 5 -    764599 AAAAG
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 193633 5 -   2853901 AAAAG
i calJac3.chrY              I 1 I 4
s saiBol1.JH378276             494120 5 -   3282555 AAAAG
i saiBol1.JH378276          I 1 I 4
s cebCap1.NW_016107979v1       279068 5 -   1024465 AAAAG
i cebCap1.NW_016107979v1    I 542 C 0
s mm10.chr9                  55165516 5 + 124595110 AAAAG
i mm10.chr9                 I 14 C 0
e micMur3.chr3                 911948 82 - 119751181 I
e proCoq1.NW_012149419v1       635516 0 -   2566024 C
e aotNan1.NW_018511953v1       725048 863 -   3745603 I
e dasNov3.JH569975              21944 0 -   2180720 C
e canFam3.chr30                 36841 0 -  40214260 C
e otoGar3.GL873530            6752112 0 -  36342412 C

a score=72371.000000
s hg38.chr15_KI270850v1_alt    176441 8 +    430880 AGTTAAGT
s panTro5.chr15              17985721 8 -  83230942 AGTTAAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17212019 8 -  99763055 AGTTAAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275051 8 +    378907 AGTTAAGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129336 8 + 121039945 AGTTAAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346015 8 + 169600520 AGTTAAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107336175 8 - 171882078 AGTTAAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5334939 8 -   6271500 AGTTAAGT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1801745 8 -   1987038 AGTTAAGG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054445 8 -  24206276 AGTTAAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283469 8 -   1458659 AGTTAAGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718381 8 -    764599 AGTTAAGT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 193642 8 -   2853901 AGTTAAGA
i calJac3.chrY              I 4 C 0
s saiBol1.JH378276             494129 8 -   3282555 AGTTAAGA
i saiBol1.JH378276          I 4 C 0
s cebCap1.NW_016107979v1       279073 8 -   1024465 AGTTAAGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       725911 8 -   3745603 AGTTAAGA
i aotNan1.NW_018511953v1    I 863 C 0
s mm10.chr9                  55165521 7 + 124595110 AGTCCAG-
i mm10.chr9                 C 0 C 0
e micMur3.chr3                 911948 82 - 119751181 I
e proCoq1.NW_012149419v1       635516 0 -   2566024 C
e dasNov3.JH569975              21944 0 -   2180720 C
e canFam3.chr30                 36841 0 -  40214260 C
e otoGar3.GL873530            6752112 0 -  36342412 C

a score=26360.000000
s hg38.chr15_KI270850v1_alt    176449 3 +    430880 TTT-
s panTro5.chr15              17985729 3 -  83230942 TTT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17212027 3 -  99763055 TTT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275059 3 +    378907 TTT-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129344 3 + 121039945 TTT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346023 3 + 169600520 TTT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107336183 3 - 171882078 TTT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5334947 3 -   6271500 TTT-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1801753 3 -   1987038 TTT-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054453 3 -  24206276 TTT-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283477 3 -   1458659 TTT-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718389 3 -    764599 TTT-
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 193650 3 -   2853901 TTT-
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             494137 3 -   3282555 TTC-
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       279081 3 -   1024465 TTT-
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       725919 3 -   3745603 TTT-
i aotNan1.NW_018511953v1    C 0 C 0
s dasNov3.JH569975              21944 3 -   2180720 -TTA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 911948 82 - 119751181 I
e proCoq1.NW_012149419v1       635516 0 -   2566024 C
e mm10.chr9                  55165528 0 + 124595110 C
e canFam3.chr30                 36841 0 -  40214260 C
e otoGar3.GL873530            6752112 0 -  36342412 C

a score=549336.000000
s hg38.chr15_KI270850v1_alt    176452 36 +    430880 GTATGGAGAGCCATGAAGATAAGAGGTGAAAATTAA
s panTro5.chr15              17985732 36 -  83230942 GTATGGAGAGCCATGAAGATAAGAGGTAAAAATTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17212030 36 -  99763055 GTATGGAGAGCCATGAAGATAAGAGGTAAAAATTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275062 36 +    378907 GTATGGAGAGCCATGAAGATAAGAGATGAAAATTAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129347 36 + 121039945 GTATGGAGAGCCATGAAGATAAGAGGTAAAAATTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346026 36 + 169600520 GTGTGGAGAGCCATGAAGATAAGAGGTAAAAATTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107336186 36 - 171882078 GTATGGAGAGCCATGAAGATAAGAGGTAAAAATTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5334950 36 -   6271500 GTCTGGAGAGCCATGAAGATAAGAGGTAAAAATTAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1801756 36 -   1987038 GTGTGGAGAGCCATGAAGATAAGAAGTAAAAATTAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054456 36 -  24206276 GTATGGAGAGCCATGAAGATAAGAGGTAAAAATTAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283480 36 -   1458659 GTATGGAGAGCCATGAAGATAAGAGGTAAAAATTAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718392 36 -    764599 GTGTGGAGAGCCATGAAGATAAGAGGTAAAAATTAA
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 193653 36 -   2853901 GTATGGAGAGCCATGAAGGTAAGAGGTAAAAATTAA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             494140 36 -   3282555 GTATGGAGAGCCATGAAGGTAAGAGGTAAAAATTAA
i saiBol1.JH378276          C 0 M 556
s cebCap1.NW_016107979v1       279084 36 -   1024465 GTATGGAGAGCCATGAAGGTAAGAGGTAAAAATTAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       725922 36 -   3745603 GTATGGAGATCCATGAAGGTAAGAGATAAAAATTAA
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       635516 36 -   2566024 GTATGGAGAGTGATGAAGGTAAGAGGTAAAAATTAA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6752112 36 -  36342412 GCATGGAGAGTCATGAAGGTAAGAAATAAAAATTAA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55165528 32 + 124595110 ATCTTAAGAGCCATGAAACTCGGAGT----AATTAA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 36841 36 -  40214260 GTCCTGAGAGGCAGGAAGGATAGAGGTAAAAGTAAA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              21947 36 -   2180720 GTATGGAGACCCATGAACATACAAGCTAAATATAAA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 911948 82 - 119751181 I

a score=494932.000000
s hg38.chr15_KI270850v1_alt    176488 47 +    430880 AGGCTTGATGGACACATGTTTAC-ATCTCCAGCAAG-GGGGTTGATGGG------
s panTro5.chr15              17985768 47 -  83230942 AGGCTTGATGGACACATGTTTAC-ATCTCCAGCAAG-GGGGTTGATGGG------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17212066 47 -  99763055 AGGCTTGATGGACACATGTTTAC-ATCTCCAGCAAG-GGGGTTGATGGG------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275098 47 +    378907 AGGCTTGATGGACACATGTTTAC-ATCTCCATCAAG-GAGGTTGATGGG------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129383 46 + 121039945 AGGCTTGATGGACACATGTTTAC-ATCTCCAGCAAG-GGGATTGAT-GG------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346062 47 + 169600520 AGACTTGATGGACACATGTTTAC-ATCTCCAGCAAG-GGGGTTGATGGG------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107336222 47 - 171882078 AGGTTTGATGAACACATGTTTAC-ATCTCCAGCAGG-GGGGTTGATGGG------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5334986 47 -   6271500 AGGCTTGATGGACACATGTTTGC-ATCTCCAGCAAG-GGGGTTGATGGG------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1801792 47 -   1987038 AGACTTGATGGACATATGTTTAC-ATCTCCAGCAAG-GGGGTTGATGGG------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054492 47 -  24206276 AGGTTTGATGGACACATGTTTAC-ATCTCCAGCAAG-GGGGTTGATGGG------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283516 47 -   1458659 AGATTTGATGAACACATGTTTAC-ATCTCCAGCAAG-GGGGTTGATGGG------
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718428 47 -    764599 AGGTTTGATGGACACATGTTTAC-ATCTCCAGCAAG-GGGGTTGATGGG------
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 193689 47 -   2853901 AAGCTAGATGGATGAATGTTCAC-ATATCCAACAAG-GGGGTTCATGGG------
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       279120 47 -   1024465 AAGCTAGATGGATGAATGTTCAC-ATATCCAACAAG-GGGGTTGATGGG------
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       725958 47 -   3745603 AAGCTAGATGGGTGAATGTTCAC-ATATTCAACAAG-GGGGTTGATGGG------
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       635552 45 -   2566024 AAGCTAGACAGACATATGTTCAC-TTCTCCAGCAG---GGGATGATGAA------
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6752148 47 -  36342412 AAGCTATACAGACATATGTTCCCACTCTCCAGCAG--AGGGATAATGAG------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55165560 44 + 124595110 -ACCCAGACAGGTACATGTTT-C-ATTTTCAGCAGA-CTGG-TGATGGG------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 36877 48 -  40214260 AAGCTAGACAGACATACGTTTGC-ATCTCCAGCAGGAGAGAGTGACAGG------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              21983 50 -   2180720 AAGTTAGATAGAC--ATGTTCAC-ATCTTCTGTAA--GGAGTCAATAGGACAGGG
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 911948 82 - 119751181 I
e saiBol1.JH378276             494176 556 -   3282555 M

a score=82284.000000
s hg38.chr15_KI270850v1_alt    176535 5 +    430880 AAAGA
s panTro5.chr15              17985815 5 -  83230942 AAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17212113 5 -  99763055 AAAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275145 5 +    378907 AAAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129429 5 + 121039945 AAAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346109 5 + 169600520 AAAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107336269 5 - 171882078 AAAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5335033 5 -   6271500 AACGA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1801839 5 -   1987038 AAAGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054539 5 -  24206276 AAAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283563 5 -   1458659 AAAGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718475 5 -    764599 AAAGA
i colAng1.NW_012118866v1    C 0 I 27
s calJac3.chrY                 193736 5 -   2853901 AAAGA
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       279167 5 -   1024465 AAAGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       726005 5 -   3745603 AAAGA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 912030 5 - 119751181 AAAGA
i micMur3.chr3              I 82 C 0
s proCoq1.NW_012149419v1       635597 5 -   2566024 AAAGA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6752195 5 -  36342412 AAAGA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55165604 5 + 124595110 AAAGA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 36925 5 -  40214260 ACAGG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              22033 5 -   2180720 AAGGG
i dasNov3.JH569975          C 0 C 0
e saiBol1.JH378276             494176 556 -   3282555 M

a score=85568.000000
s hg38.chr15_KI270850v1_alt    176540 7 +    430880 CTGATAG
s panTro5.chr15              17985820 7 -  83230942 ATGATAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17212118 7 -  99763055 ATGATAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275150 7 +    378907 ATGATAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129434 7 + 121039945 ATGATAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346114 7 + 169600520 ATGATAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107336274 7 - 171882078 ATGATAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5335038 7 -   6271500 ATGATAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1801844 7 -   1987038 ATGATAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054544 7 -  24206276 ATGATAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283568 7 -   1458659 ATGATAG
i manLeu1.NW_012105520v1    C 0 C 0
s calJac3.chrY                 193741 7 -   2853901 ATGATAG
i calJac3.chrY              C 0 I 19360
s cebCap1.NW_016107979v1       279172 7 -   1024465 ATGATAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       726010 7 -   3745603 ATGATAG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 912035 7 - 119751181 ATGATAG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       635602 7 -   2566024 GTGGTAG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6752200 5 -  36342412 --GACAG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55165609 7 + 124595110 CAGACAG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 36930 5 -  40214260 --GAAAT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              22038 7 -   2180720 ATGAGAG
i dasNov3.JH569975          C 0 C 0
e colAng1.NW_012118866v1       718480 27 -    764599 I
e saiBol1.JH378276             494176 556 -   3282555 M

a score=1015273.000000
s hg38.chr15_KI270850v1_alt    176547 114 +    430880 AC----ATAGCTCCATT-ACTGCTACCTCCTTTTAGGAAGTTGCTTCTGA------------------------------------------------------ATA--TCTAAAGAT----------------AACAGTTTTATA----ATAGCAGAAATG-----AGG-----------------------------------------TTTTTTTCAGTGTCT-------------------------AAAacattacatg----aa
s panTro5.chr15              17985827 114 -  83230942 AC----ATAGCTCCATT-ACTGCTACCTCCTTTTAGGAAGCTGCTTCTGA------------------------------------------------------GTA--TCTAAAGAT----------------AACAGTTTTATA----ATAGCAGAAATG-----AGG-----------------------------------------TTTTTTTCAGTGTCT-------------------------AAAATATTACATA----AC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17212125 114 -  99763055 AC----ATAGCTCCATT-ACTGCTACCTCCTTTTAGGAAGCTGCTTCTGA------------------------------------------------------GTA--TCTAAAGAT----------------AACAGTTTTATA----ATAGCAGAAATG-----AGG-----------------------------------------TTTTTTTCAGTGTCT-------------------------AAAATATTACATA----AC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275157 114 +    378907 AC----ATAGCTCCATT-ACTGCTACCTCCTTTTAAGAAGTTGCTTCTGA------------------------------------------------------ATA--TCTAAAGAT----------------AACAGTTTTACA----ATAGCAGAAATG-----AGG-----------------------------------------TTTTTTTCAGTGTCT-------------------------AAAacattacatg----aa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129441 114 + 121039945 AC----GTAGCTCCATT-ACTGCTACCTCCTTTTAGGAAGTTGCTTCTGA------------------------------------------------------ATA--TCTAAAGAT----------------AACAGTTTTATA----ATAGCAGAAATG-----AGG-----------------------------------------TTTTTTTCAGTGTCT-------------------------AAAacattacata----ac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346121 118 + 169600520 AC----ATAGCTCCAGT-ACTGCTACCTCCTTTTAGGAAGTTGCTTCTGA------------------------------------------------------ACA--TCTAAAGAT----------------AACAGTTTTATA----ATAGCAGAAATG-----AGT-----------------------------------------TATTTTTCAGTGTCT-------------------------AAAacataacataacatac
i rheMac8.chr7              C 0 I 4
s macFas5.chr7              107336281 114 - 171882078 AC----ATAGCTCCATT-ACTGCTACCTCCTTTTAGGGAGTTGCTTCTGA------------------------------------------------------ACA--TCTAAAGAT----------------AACAGTTTTAAA----AGAGCAGAAATG-----AGT-----------------------------------------TATTTTTCAGTGTCT-------------------------AAAacattatata----ac
i macFas5.chr7              C 0 I 4
s macNem1.NW_012011056v1      5335045 112 -   6271500 AC----AAAGCTCCAAT-ACTGCTACCTCCTTTTAGGAAGTTGCTTCTGA------------------------------------------------------ACA--TGTAAAGAT----------------AATAGTTTTATA----ATAGCAGAAATG-----AGT-----------------------------------------TATTTTTCAGTGTCT-------------------------AAAACTTTACATG------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1801851 114 -   1987038 AC----ATAGCTCCATT-ACTGCTACCTCCTTTTAGGAAGTTGCTTCTGA------------------------------------------------------ACA--TCTAAAGAT----------------AACAGTTTTATA----ATAGCAGAAATG-----AGT-----------------------------------------TATTTTTCAGTGTCT-------------------------AAAacattacata----ac
i cerAty1.NW_012002657v1    C 0 I 4
s chlSab2.chr29              21054551 118 -  24206276 ACATAGATAGCTCCATT-ACTGCTACCTCCTTTTAGGGAGTTGCTTCTGA------------------------------------------------------ACA--TCTAAAGAT----------------AACAGTTTTTTA----AGAGCAGAAATG-----AGT-----------------------------------------TATTTTTCAGTGTCT-------------------------AAAacattacata----ac
i chlSab2.chr29             C 0 I 4
s manLeu1.NW_012105520v1       283575 114 -   1458659 AC----ATAGCTCCATT-ACTGCTACCTCCTTTTAGGGAGTTGCTTCTGA------------------------------------------------------ACA--TCTAAAGAT----------------AACAGTTTTATA----AGAGCAGAAATG-----AGT-----------------------------------------TATTTTTCAGTGTCT-------------------------AAAacattatata----ac
i manLeu1.NW_012105520v1    C 0 I 4
s calJac3.chrY                 213108 105 -   2853901 AC----ATAGCACTGTT-ATTGCTACCTTCTTTTAGGAAGTTGTTTCTGA------------------------------------------------------AGA--TCTAAAGAT-----------------ACGGTTTTATA----ATAGCAGAATTG-----AGT-----------------------------------------TATTTTTCAGTGTCT-------------------------AAAATAT------------
i calJac3.chrY              I 19360 C 0
s cebCap1.NW_016107979v1       279179 106 -   1024465 AC----ATAGCACTGTT-ATTGCTACCTCCTTTTAGGATGTTGTTTCTGA------------------------------------------------------AGA--TCTAAAGAT----------------AACAGTTTTATA----ATAGCAGAAATG-----AGT-----------------------------------------TATTTTTCAGTGTCT-------------------------AAAATAT------------
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       726017  99 -   3745603 AC----ATAGCACTGTT-ATTGCTACTTCCTTTTAGGAATTTGTTTCTGA------------------------------------------------------AGA--TCTAAAGAT----------------AACAG-----------ATAGCAGAAATG-----AGT-----------------------------------------TATTTTTCAGTGTTT-------------------------AAAATAT------------
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 912042 119 - 119751181 AC----ATAGCCCTATT-ACTGCCGTGTTCTTTTAGGAGGTTGCCTATAA------------------------------------------------------AGA--TCTAAAGAT----------------ACCAGTTTTATA----ATGGCAGAAATGAGTCAAGT-----------------------------------------TATTTTTCAGTGTCT-------------------------AAAATATTACATA----AA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       635609 118 -   2566024 AC----GCAGCCTTATT-ACTGCCGTGTCCTTTTAGG-GGTCGCCTCCAA------------------------------------------------------AGA--TCTAAAGAT----------------ACCAGTTTTATA----ATAGCAAAAATGAGTCAAGT-----------------------------------------TATTTTTCAGTGTCT-------------------------AAAATATTACATA----AA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6752205 120 -  36342412 AT----ACGGCGCCATTAACTGCCGTGTCATTTTGGGAGGTCGCCTCTAA------------------------------------------------------AGA--TCTAAAGAC----------------ACCAGTTTTAAA----ATAGCAGAAATGAATCAAAT-----------------------------------------TATTTTTTAGTGTCT-------------------------AAAATATTATATA----AA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55165616 248 + 124595110 AC----ATAGCTCTCTA-GCTGTT-CCTCCTT-----AAATTGCTTATGagttaggcctactggcacaggcccataatcccagctacttggagttaaggcatggata--ttgcaaggtcaaggccagtctggtcaacagattgagatcctgtctcagaaGTG-----AAGATAGGGTTGAAACTATAACTCATTGGGAGAATGCTCACCTACTTTGTGCAGGGTCCTAGGTATAATCCCTGATACTaaaaaaaaaccccaaaaa----ac
i mm10.chr9                 C 0 I 10
s canFam3.chr30                 36935 112 -  40214260 -------TAGTCCCTTT-ACTGCTATCTTCTTTTAGGACGGTAACTCTAA------------------------------------------------------AAAGGTCCAGAAGT----------------ATGAGTCTTATA----ATAGTAGTAATG-----A-C-----------------------------------------TGTTTTCCGCTGTCT-------------------------AAAATTTTTCATC----AA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              22045  99 -   2180720 ---ATAATAGCCCTGTT-CCTGTTGCCTCCT-----------------AA------------------------------------------------------AGG--TCCAATGAT-------------ATCATCAGTTTTGGA----ATAGTAGAAATG-----AGT------------------------GGG--------------AATATTTCAATGGCT-------------------------GAAATATTCC---------
i dasNov3.JH569975          C 0 C 0
e colAng1.NW_012118866v1       718480  27 -    764599 I
e saiBol1.JH378276             494176 556 -   3282555 M

a score=10920.000000
s hg38.chr15_KI270850v1_alt    176661 1 +    430880 a
s panTro5.chr15              17985941 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17212239 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275271 1 +    378907 a
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129555 1 + 121039945 a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346243 1 + 169600520 a
i rheMac8.chr7              I 4 C 0
s macFas5.chr7              107336399 1 - 171882078 a
i macFas5.chr7              I 4 C 0
s cerAty1.NW_012002657v1      1801969 1 -   1987038 a
i cerAty1.NW_012002657v1    I 4 C 0
s chlSab2.chr29              21054673 1 -  24206276 a
i chlSab2.chr29             I 4 C 0
s manLeu1.NW_012105520v1       283693 1 -   1458659 a
i manLeu1.NW_012105520v1    I 4 C 0
s colAng1.NW_012118866v1       718507 1 -    764599 a
i colAng1.NW_012118866v1    I 27 C 0
s micMur3.chr3                 912161 1 - 119751181 A
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       635727 1 -   2566024 A
i proCoq1.NW_012149419v1    C 0 I 8
s otoGar3.GL873530            6752325 1 -  36342412 A
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55165874 1 + 124595110 a
i mm10.chr9                 I 10 C 0
s canFam3.chr30                 37047 1 -  40214260 A
i canFam3.chr30             C 0 C 0
e aotNan1.NW_018511953v1       726116 0 -   3745603 C
e calJac3.chrY                 213213 0 -   2853901 C
e dasNov3.JH569975              22144 0 -   2180720 C
e cebCap1.NW_016107979v1       279285 0 -   1024465 C
e macNem1.NW_012011056v1      5335157 0 -   6271500 C
e saiBol1.JH378276             494176 556 -   3282555 M

a score=103681.000000
s hg38.chr15_KI270850v1_alt    176662 24 +    430880 tacataca-tacataAACA------TGTTCA------
s panTro5.chr15              17985942 23 -  83230942 TACATACA--ACATAAACA------TGTTCA------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17212240 23 -  99763055 TACATACA--ACATAAACA------TGTTCA------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275272 24 +    378907 tacataca-tacataAACA------TGTTCA------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129556 24 + 121039945 tacataca-tacataaaca------taTTCA------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346244 24 + 169600520 tagataca-tatataAACA------TGTTCA------
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              107336400 24 - 171882078 tacataca-tacataAACA------TGTTCA------
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011056v1      5335157 23 -   6271500 -AGATACA-TACATAAACA------TGTTCA------
i macNem1.NW_012011056v1    C 0 I 1
s cerAty1.NW_012002657v1      1801970 24 -   1987038 tacataca-tacataAACA------TGTTCA------
i cerAty1.NW_012002657v1    C 0 I 1
s chlSab2.chr29              21054674 24 -  24206276 tacataca-tacataAACA------TGTTCA------
i chlSab2.chr29             C 0 I 1
s manLeu1.NW_012105520v1       283694 24 -   1458659 tacataca-tacataAACA------TGTTCA------
i manLeu1.NW_012105520v1    C 0 I 1
s colAng1.NW_012118866v1       718508 30 -    764599 tacataca-tacataAACATGTTCTTGTTCA------
i colAng1.NW_012118866v1    C 0 I 1
s calJac3.chrY                 213213 16 -   2853901 ---------TACATATATA------TGTTCA------
i calJac3.chrY              C 0 I 1
s cebCap1.NW_016107979v1       279285 16 -   1024465 ---------TACATAAATA------TGTTCA------
i cebCap1.NW_016107979v1    C 0 I 1
s aotNan1.NW_018511953v1       726116 16 -   3745603 ---------TACATAAATA------TGTTCA------
i aotNan1.NW_018511953v1    C 0 I 1
s micMur3.chr3                 912162  6 - 119751181 -------------------------TGCTCC------
i micMur3.chr3              C 0 I 1
s otoGar3.GL873530            6752326  7 -  36342412 ------------------A------GGCTCT------
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55165875 24 + 124595110 aacaaacaaaaaaaaaaCC------TGTGT-------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 37048  9 -  40214260 ----------------AAA------TGCTCA------
i canFam3.chr30             C 0 I 1
s dasNov3.JH569975              22144 21 -   2180720 ---------TTCACAAAT-------TACTCATAATAT
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       635728  8 -   2566024 I
e saiBol1.JH378276             494176 556 -   3282555 M

a score=182360.000000
s hg38.chr15_KI270850v1_alt    176686 13 +    430880 AAAGTTAAATGAA
s panTro5.chr15              17985965 13 -  83230942 AAACTTAAATGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17212263 13 -  99763055 AAACTTAAATGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275296 13 +    378907 AAAGTTAAATGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129580 13 + 121039945 AAAGTTAAATGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346269 13 + 169600520 AAAGTTAAATGAA
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              107336425 13 - 171882078 AAAGTTAAATGAA
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011056v1      5335181 13 -   6271500 AAAGTTAAATGAA
i macNem1.NW_012011056v1    I 1 C 0
s cerAty1.NW_012002657v1      1801995 13 -   1987038 AAAGTTAAATGAA
i cerAty1.NW_012002657v1    I 1 C 0
s chlSab2.chr29              21054699 13 -  24206276 AAAGTTAAATGAA
i chlSab2.chr29             I 1 C 0
s manLeu1.NW_012105520v1       283719 13 -   1458659 AAAGTTAAATGAA
i manLeu1.NW_012105520v1    I 1 C 0
s colAng1.NW_012118866v1       718539 13 -    764599 AAAGTTAAATGAA
i colAng1.NW_012118866v1    I 1 C 0
s calJac3.chrY                 213230 13 -   2853901 AAGGTTAAATGAA
i calJac3.chrY              I 1 C 0
s cebCap1.NW_016107979v1       279302 13 -   1024465 AAGGTTAAATGAA
i cebCap1.NW_016107979v1    I 1 C 0
s aotNan1.NW_018511953v1       726133 13 -   3745603 AAGGTTAAATGAA
i aotNan1.NW_018511953v1    I 1 C 0
s micMur3.chr3                 912169  9 - 119751181 AAAGTTA----AA
i micMur3.chr3              I 1 C 0
s proCoq1.NW_012149419v1       635736 13 -   2566024 AAAGTTAAATGAA
i proCoq1.NW_012149419v1    I 8 C 0
s otoGar3.GL873530            6752334  8 -  36342412 AAAGTT-----AA
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  55165899 13 + 124595110 CAAGTTAAATGGA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 37058 13 -  40214260 AAAATGAAATGAG
i canFam3.chr30             I 1 C 0
s dasNov3.JH569975              22165 13 -   2180720 AAAGTTAGATGAA
i dasNov3.JH569975          C 0 I 2337
e saiBol1.JH378276             494176 556 -   3282555 M

a score=331259.000000
s hg38.chr15_KI270850v1_alt    176699 28 +    430880 GTAGGATATAAAATTGGGCCTAGTGTTT-----
s panTro5.chr15              17985978 28 -  83230942 GTAGGATATAAATTTGGGCCTAGTGTTT-----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17212276 28 -  99763055 GTAGGATATAAATTTGGGCCTAGTGTTT-----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275309 28 +    378907 GTAGGATATAAAATTGGGCCTAGTGTTT-----
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129593 28 + 121039945 GCAGGATATAAAATTGGGCCTAGTGTTT-----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346282 28 + 169600520 GTAGGATATACAATTGGGCCTAGTGTTT-----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107336438 28 - 171882078 GTAGGATATAAAATGGGGCCTAGTGTTT-----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5335194 28 -   6271500 GTAGCATACAAAATTGGGCCTAGTGTTT-----
i macNem1.NW_012011056v1    C 0 I 6378
s cerAty1.NW_012002657v1      1802008 28 -   1987038 GTAGGATATACAATTGGGCCTAGTGTTT-----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054712 28 -  24206276 GTAGGATATAAAATGGGGCCTAGTGTTT-----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283732 28 -   1458659 GTAGGATATAAAATGGGGCCCAGTGTTT-----
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718552 28 -    764599 GTAGGATATAAAATGGGGCCTAGTGTTT-----
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 213243 28 -   2853901 GTAGGATATAAAATTTGGCCTAGTTTTA-----
i calJac3.chrY              C 0 C 0
s cebCap1.NW_016107979v1       279315 28 -   1024465 GTAGGATATAAAATCGGGCCTAGTTTTT-----
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       726146 28 -   3745603 GTAGGATATAAAATTGGGCCTAGTTTTT-----
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 912178 28 - 119751181 ATAGGATATAAAATTGGGCCTAATTTTA-----
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       635749 28 -   2566024 ATAGGATATAAAATTGGGCCTAATTTTA-----
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6752342 28 -  36342412 ATAGGATATAAAATTGGGCCTAACTTTA-----
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55165912 26 + 124595110 ATAGGGCTTATA-TTGGATCTAATTAT------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 37071 33 -  40214260 CTAGGGCATAAAATTGGGTCTCATTGtattttt
i canFam3.chr30             C 0 C 0
e dasNov3.JH569975              22178 2337 -   2180720 I
e saiBol1.JH378276             494176 556 -   3282555 M

a score=71382.000000
s hg38.chr15_KI270850v1_alt    176727 8 +    430880 AAAACAAT
s panTro5.chr15              17986006 8 -  83230942 AAAAAAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17212304 8 -  99763055 AAAAAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275337 8 +    378907 AAAACAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129621 8 + 121039945 AAAAAAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346310 8 + 169600520 AAAAAAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107336466 7 - 171882078 -AAAAAAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1802036 8 -   1987038 AAAAAAGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054740 7 -  24206276 -AAAAAAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283760 7 -   1458659 -AAAAAAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718580 7 -    764599 -AAAAAAT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 213271 6 -   2853901 --AAAAAT
i calJac3.chrY              C 0 I 1
s cebCap1.NW_016107979v1       279343 6 -   1024465 --AAAAAT
i cebCap1.NW_016107979v1    C 0 I 1
s aotNan1.NW_018511953v1       726174 6 -   3745603 --AAAAAT
i aotNan1.NW_018511953v1    C 0 I 1
s micMur3.chr3                 912206 8 - 119751181 TAAAAAGT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       635777 8 -   2566024 TAAAAAGT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6752370 8 -  36342412 TAAAAGGT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55165938 7 + 124595110 -AGAAAGT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 37104 8 -  40214260 taaaaaat
i canFam3.chr30             C 0 C 0
e dasNov3.JH569975              22178 2337 -   2180720 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e saiBol1.JH378276             494176 556 -   3282555 M

a score=3092771.000000
s hg38.chr15_KI270850v1_alt    176735 260 +    430880 AAATATATTTACATGAAGGAGAAA-A--CAActcacttcccac----tct----tacagcc-----tctgccagtt-tatcatagcctagtttcttgagagaataagcta--catgtcttcacc-ttt-tttcactgaactcattataatctggattctgccttcatct-ttgcgctaaaa----------------------------tttatctcctcgtttccaaatccagtggctcccctcttagtccacaaattgactcctctgcagtattttgttaatgttga----ttgttcctttgttgaaacatt
s panTro5.chr15              17986014 260 -  83230942 AAATGTATTTACATGAAGGAGAAA-A--CAACTCACCTCCCAG----TCT----TACAGCC-----TCTGCCAGTT-TATCATAACCTAGTTTCTTGAGAGAATAAGCTA--CATGtcttcacc-ttt-tttcactgagctcattataatctggattctgccttcatcg-ttgcactaaaa----------------------------tttatctcctagttgccaaatccagtggctcccctcttagtccccaaattgacccctctgcagtattttgttaatgttga----ttgttcccttgttgaaacatt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17212312 260 -  99763055 AAATGTATTTACATGAAGGAGAAA-A--CAACTCACCTCCCAG----TCT----TACAGCC-----TCTGCCAGTT-TATCATAACCTAGTTTCTTGAGAGAATAAGCTA--CATGtcttcacc-ttt-tttcactgagctcattataatctggattctgccttcatcg-ttgcactaaaa----------------------------tttatctcctagttgccaaatccagtggctcccctcttagtccccaaattgacccctctgcagtattttgttaatgttga----ttgttcccttgttgaaacatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275345 249 +    378907 AAATATATTTACATGAAGGAGAAA-A--CAGCTCACCTCCCAC----TCT----TACAGCC-----TCTGCCAGTT-TATCATAGCCTAGTTTCTTGAGAGAATAAGCTA--CATGTCTTCACC-TTT-TTTCACTGAGCTCATTATAAT-----------CTTCATCG-TTGTGCTAAAA----------------------------TTTatctcctagttgccaaatccagtggctcccctcttagtccccaaattgacccctctgcagtattttgttaatgttga----ttgttcccttgttgaaacatt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129629 259 + 121039945 AAATATATTTACATGAAGGAGAAA-A--CAActcacctcccac----tct----tacagcc-----tctgccagtt-tatcatagcctagtttcttgagagaataagcta--catgtcttcacc-ttt-tttcactgagctcattataatctggattctgccttcatca-ttgtgctaaaa----------------------------tttatctcctagttgccaaatccagtgacttccctcttagtccccaaattgac-cctctgcagtattttgatattgttga----ttgttcccttcttgaaacatt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346318 261 + 169600520 AAATATATTTACGTGAAGGAGAAA-A--CAACTCACCTCCTAC----TCT----TACAGCC-----TCTGCCAGTT-TATCATAGCCTAGTTTCTTGAGAGAATAAGCTA--CATGtcttcaccattt-tttcactgagcttattataatctggattctgccttcatcg-ttgcgctaaaa----------------------------tttatctcctagttgccaaatccagtggctcccctcttagtccccaaattgacccctctgtagtattttgatactgttga----ttgttcccttgttgaaacatt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107336473 260 - 171882078 AAATATATTTACATGAAGGAGAAA-A--CAACTCACCTCCTAC----TCT----TACAGCC-----TCTGCCGGTT-TATCATAACCTAGTTTATTGAGAGAATAAGCTA--CATGTATTCACC-TTT-TCTCATTGAGCTCATTATAATCTGGATTCTGCCTTCATCG-TTGCGCTAAAA----------------------------TTTacctcttagttgccaaatctagtggctcccctcttagtccccaaattgacccctctgtagtattttgatactgtgga----ttgctcccttgttgaaacatt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1802044 261 -   1987038 AAATATATTTACGTGAAGGAGAAA-A--CAACTCACCTCCTAC----TCT----TACAGCC-----TCTGCCAGTT-TAtcatagcctaatttcttgagagaataagcta--catgtcttcaccattt-tttcactgagcttattataatctggattctgccttcatcg-ttgcgctaaaa----------------------------tttatctcctagttgccaaatccagtggctcccctcttagtccccaaattgacccctctgtagtattttgatactgttga----ttgttcccttgttgaaacatt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21054747 260 -  24206276 AAATATATTTACATGAAGGAGAAA-A--CAACTCACCTCACAC----TCT----TACAGTC-----TCTGCCGGTT-TATCATAGCGTAGTTTATTGAGAGAATAAGCTA--CATGtcttcacc-ttt-tctcattgagctcattataatctggattctgtcttcatcg-ttgcgctaaaa----------------------------tttacttctcagttgccaaatccagtggctcccctcttagtccccaaattgacccctctgtagtattttgatactgttga----ttgttcccttgttgaaacatt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       283767 260 -   1458659 AAATATATTTACATGAAGGAGAAA-A--CAACTCACCTCCTAC----TCT----TACAGCC-----TCTGCCGGTT-TATCATAACCTAGTTTATTGAGAGAATAAGCTA--CAGGtcttcacc-ttt-tctcattgagctcattataatctggattctgccttcatcg-ttgcgctaaaa----------------------------tttacctcttagttgccaaatctagtggctcccctcttagtccccaaattgacccctctgtagtattttgatactgtgga----ttgttcccttgttgaaacatt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718587 260 -    764599 AAATATATTTACATGAAGGAGAAA-A--CAACTCGCCTCACAC----TCT----TATAGCC-----TCTGCCGGTT-TATCATAACCTAGTTTCTTGAGAGAATAAGCTA--CATGtcttcacc-ttt-tttcactgagctcactataatctggattctgccttcatcg-ttgtgctaaaa----------------------------tttacctcctagttgccaaatccagtggctcccctattagtccccaaattgacccctctgcagtattttgatactgttga----ttgttcctttgttgaaacatt
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 213278 260 -   2853901 AAGTGTATTTACATGGAGGAGAAA-A--CAACTCACCTCCCAC----TTT----TATAGTC-----TCTGCCAGTT-TATCATAGCCTAGTATCTTGAGAGAATAAGCTA--TATGTCTTCACC-TTT-TTTCACTGAACTCATTATAATCTGGATTCTGCCTTCTTTCTTTGCACTAACA----------------------------TGTatctcctagttgccaaatccagtggctcctctcttag-ccccaaattgacccctctgcagaattttgatactgttga----ttgttcccttgttgaaacatt
i calJac3.chrY              I 1 C 0
s saiBol1.JH378276             494732 259 -   3282555 AAGTATATTTACATGGAGGAGAAA-A--CAACTCACCTCCCAC----TTT----TATAGTC-----TCTGCCAATT-TATCATAGCCTAGTATCTTGAGAGAATAAGCTA--TATGTCTTCACC-TTT-TTTCACTGAACTCATTATAATCTAGACTCTGCCTTCATTC-TTGCACTAAaa----------------------------tgtatctcctagttgccaaatccaggggctcctctcttag-ccccaaattgacccctctgcaggattctgatactgttga----ttgttcccttgttgaaccatt
i saiBol1.JH378276          M 556 C 0
s cebCap1.NW_016107979v1       279350 259 -   1024465 AAGTATATTTACATGGAGGAGAAA-A--CAACTCACCTCCCAC----TTC----TATAGTC-----TCTGCCAGTT-TATCATAGCCTAGTATCTTGAGAGAACAAGCTA--TATGTATTCACC-TTT-TTTCACTGAACTCATTATAATCTTGATTCTGCCTTCATTC-TTGCACTAAaa----------------------------tgtatctcctagttggcaaatccagtggctcctctctcag-ccccaaattgacccctctgcaggattttgatactgttga----ttattccctttttgaaacatt
i cebCap1.NW_016107979v1    I 1 C 0
s aotNan1.NW_018511953v1       726181 259 -   3745603 AAGTATATTTACATGGAGGAGAAA-A--CAACTCACCTCCCAC----TTT----TATAGTC-----TCTGCCAGTT-TATCATAGCCTAATATCTTGAGAGAATAAGCTG--TATGTCTTCACC-TTT-TTTCAATGAACTCATTATAATCTTGATTCTGCCTTCATTC-TTGCACTAAAA----------------------------TGTGTctcctagttgccaaatccagtggctcctctcttag-acccaaattgacccctctgcagggttttgatactgttga----ttgttcccttgttgaaacatt
i aotNan1.NW_018511953v1    I 1 C 0
s micMur3.chr3                 912214 253 - 119751181 ------ATTTGCATGAAGGGAAAA-A--CAATTCACTTTCCACTTTATCT----TACAGCT-----TCTGCCAGTT-TCTCATAGTCTAGTTTCTTGAAAAAATAAGCTA--TATTTCTTCATC-TTTAATTCACTT-----ATTATAATCTGGATTCTGCCTTCACTG-TTGCACT-AAA----------------------------TTTGTCTGCTAgttgccaaatccaatggctccttttttagtccccaaattgacccctctatagcattttgatactattga----ttgttcccttattgaaatatt
i micMur3.chr3              C 0 I 246
s proCoq1.NW_012149419v1       635785 259 -   2566024 AGATACATTCGCATGAAGGGAAAA-A--CAATTTACTTTCCACTTTATCT----TACAGCC-----TCTGCCAGTT-TCTCATAGTCTAGTTTCTTGATAAAATAAGCTA--TATTTCTTCATC-TTTAATTCACTT-----ATTATAACCTGGATTCTGCCTTCATTG-TTGcact-aaa----------------------------tttatctcttagttgccaaatccagtggctccttcttcagttccaaaattgacccctctacagcattttgatactgtcga----ttattcccttgttgaaatatt
i proCoq1.NW_012149419v1    C 0 I 8
s otoGar3.GL873530            6752378 253 -  36342412 AAATATATATGCATTAA-GGAAAA-A--TAGTTCACCTCCTACTGTATCT----TATAGCCACCTTTTGGCCAGTT-TCTC--AGTCTAGTTTTTTGAGGAAATAATCTA--------TTTATC-TTTAATTCACTTAACTCATTATAATCTGGATTCTGCCTTCATTG-TTGCATTAAAA----------------------------TTTATCTCTTAGTTGCCAAATCCAGTGGCTTTTTTCT---TTCCAAAATTGACCCCT-TCCAGCCTTTTGACACTGTTGA--------TCTCTTGTTGAAATATT
i otoGar3.GL873530          C 0 I 14
s mm10.chr9                  55165945 225 + 124595110 AAGTACATTTACCTGAAGGAAAGATA--CA------CTTTCAC----TCTGATAGATAGCC-----TCTGCCGATT-TCTCATAGCCTGGTTTCT------AATAACCTTGTTTTGTTTTGACT-TTT-T---AGTTTACTTACTGGAGTAGAGAATCTGCC------G-TTGTATAGACA----------------------------TT----TCTTAGCTGTCCAGTCCAGTGGCTCCTTT-TTAGTAC---------------TAAAGCATTTTTCCATGGTTGAAATTTTGTTCCATC-----AACATG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 37112 286 -  40214260 taatatatttaCATAAAAGAAGAA-AACCAAATTACCCTCTAT----TCT----TATAG-------TCTACCAGTTATTTCATAACCTCATTCCACGACAG---ATGTTG--TATTTCCTCACC-TTTGCTTTACTTAATTCGTTATAGTCTAGATTGTGCCTTCATTT-TTGCACTGAAAAAGAATTTTTTTTTTTGCACTGAAAATTTTTATGTC-TAGTTGCCAAATACAGGGACTCCTTTTTTAACCTTAAAACTGACATCTTTGCAGCAGTTTCATAGTGGTAA----TTTTTCCCTTATTGAAACATT
i canFam3.chr30             C 0 C 0
e dasNov3.JH569975              22178 2337 -   2180720 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I

a score=505830.000000
s hg38.chr15_KI270850v1_alt    176995 49 +    430880 CCTCCG---TT----------------cttaatgtccaccagcaaagagttggttaaataaaaattat
s panTro5.chr15              17986274 49 -  83230942 CCTCCG---TT----------------cttaatgtccaccaataaagagttggttaaataaaaattat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17212572 49 -  99763055 CCTCCG---TT----------------cttaatgtccaccaataaagagttggttaaataaaaattat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275594 49 +    378907 CCTCCG---TT----------------cttaatgtccaccagtaaagagttggttaaataaaaattat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129888 49 + 121039945 cctcca---tt----------------cttaatgtccaccagtaaagagttggttaaataaaaattat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346579 49 + 169600520 cctcca---tt----------------CTTGatgtccaccaataaagagttggttaaataaaaattat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107336733 49 - 171882078 cctcca---tt----------------CTTGatgtccaccaataaagagctggttaaataaaaattat
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1802305 45 -   1987038 cctcca---tt----------------cttgatgtccaCCAGT----AGTTGGTTAAATAAAAATTAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21055007 49 -  24206276 cctcca---tt----------------CTTGatgtccaccaataaagagctggttaaataaaaattat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284027 49 -   1458659 cctcca---tt----------------CTTGatgtccaccaataaagagctggttaaataaagattat
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718847 49 -    764599 cctcca---tt----------------cttaaggtccaccaataaagagttggttaaataaaaattat
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 213538 49 -   2853901 cctcca---tt----------------cttaatgtgtaccaataaagagttggttaaataaaaattat
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             494991 49 -   3282555 cctcca---tt----------------cttaatgtgtaccaataaagagttggttaaataaaaattac
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       279609 49 -   1024465 cctcca---tt----------------cttaatgtgtaccaataaagagttggttaaataaaaattat
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       726440 49 -   3745603 cctcca---tt----------------cttaatgtgtaccaataaagagttggttaaataaaaattat
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       636052 50 -   2566024 CATGTAT--TA----------------CTTAATGTTCACCAGTAAAGAGTTGGTTAAATAAAAATTAT
i proCoq1.NW_012149419v1    I 8 I 162
s otoGar3.GL873530            6752645 42 -  36342412 CATTTA----------------------TTAATGTTCACTGATAAAGAATTGAT----TAAAAATTGT
i otoGar3.GL873530          I 14 C 0
s mm10.chr9                  55166170 40 + 124595110 ------TATTA----------------CTTAATGCCCACCAATAAAGAGCTGGTTAAGTTAC------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 37398 54 -  40214260 CCTCCA---TTTAACAAACATTTATTACTTAAAGT-CGCCAATAAAAAGTCAGTTAAA----------
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 912467 246 - 119751181 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I

a score=215068.000000
s hg38.chr15_KI270850v1_alt    177044 26 +    430880 agtgtacagttttataatagaatatt
s panTro5.chr15              17986323 26 -  83230942 agtgtacagttttataatagaatatt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17212621 26 -  99763055 agtgtacagttttataatagaatatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275643 26 +    378907 agtgtacagttttataatagaatatt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129937 26 + 121039945 agtgtacagttttataatagaatatt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346628 24 + 169600520 agtgt--agttttataatagaatatt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107336782 24 - 171882078 agtgt--agttttataatagaatatt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1802350 24 -   1987038 AGTGT--AGTTTTATAATAGAATATT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21055056 24 -  24206276 agtgt--agttttataatagaatatt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284076 24 -   1458659 agtgt--agttttataatagaatatt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718896 24 -    764599 agtgt--agttttataatagaatatt
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 213587 26 -   2853901 agtatacagttttataatagaatatt
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495040 26 -   3282555 agtatacggttttataatagaatatt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       279658 26 -   1024465 agtatacggttttataatagaatatt
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       726489 26 -   3745603 agtatacagttttataatagaatatt
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6752687 26 -  36342412 AGCAGAGAATTAAGACATAGAATGTT
i otoGar3.GL873530          C 0 I 144
s mm10.chr9                  55166210 13 + 124595110 ----TCCAGCTTAGTAA---------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 37452 26 -  40214260 GGCTACCAGTTTTATGATATAATAGT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 912467 246 - 119751181 I
e proCoq1.NW_012149419v1       636102 162 -   2566024 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I

a score=1087234.000000
s hg38.chr15_KI270850v1_alt    177070 127 +    430880 ctgttatagacc---aaaaaaaatgcagccagtc--tttccataaaagcatgtgcaaacttctaagatgtattaagtaaaaaagtaaggcataaaatattgtgtataatctgACCTCTTTAGTATACAGTGT
s panTro5.chr15              17986349 130 -  83230942 ctgttgtagaccaaaaaaaaaaatgcagccagtc--tttccataagagcatgtgcaaacttctaagatatattaagtaaaaaagtaaggcataaaatattgtatataatctgacccctttagtatacagtgt
i panTro5.chr15             C 0 I 308
s panPan2.chr15              17212647 130 -  99763055 ctgttgtagaccaaaaaaaaaaatgcagccagtc--tttccataagagcatgtgcaaacttctaagatatattaagtaaaaaagtaaggcataaaatattgtatataatctgACCCCTTTAGTATACAGTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275669 127 +    378907 ctgttgtagacc---aaaaaaaatgcagccagtc--tttccataaaagcatgtgcaaacttctaagatgtattaagtaaaaaagtaaggcataaaatattgtgtataatctgacctctttagtatacagtgt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102129963 127 + 121039945 ctgttgtagacc---aaaaaaaatgcagccagtc--tttccataaaagcatgtgcaaacttctaagatatattaagtaaaaaagtaaggcataaaatattgtatataatctgacccctttagtatacagtgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346652 124 + 169600520 ctgttgtagacc----aaaaaaacgcaggcagtc--tttccataagagcatgtgcaaacttctaagatatattaaattaaaaagtaaggcataaaatattgtg--taATCTGACCCCTTTAGTATACAGTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107336806 125 - 171882078 ctgttgtagacc-----aaaaaatgcaagtagtc--tttccataagagcatgtgcaaacttctaagatatattaagtaaaaaagtgaggcataaaatattgtgtataatctgacccctttagtatacagtgt
i macFas5.chr7              C 0 I 1
s cerAty1.NW_012002657v1      1802374 124 -   1987038 CTGTTGTAGACC----AAAAAAACACAGGCAGTC--TTTCCATAAGAGCATGTGCAAACTTCTAAGATATATTAAATTAAAAAGTAAGGCATAAAATATTGTG--TAATCTGACCCCTTTAGTATACAGTTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21055080 125 -  24206276 ctgttgtagacc-----aaaaaatgcaggcagtc--tttccataagagcatgtgcaaacttctaagatatactaagtaaaaaagtgaggcataaaatattgtgtatcatctgacccctttagtatacagtgt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284100 125 -   1458659 ctgttgtagacc-----aaaaaatgcaagtagtc--ttttcataagagcatgtgcaaacttctaagatatattaagtaaaaaagtgaggcataaaatattgtgtataatctgacccctttagtatacagtgt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       718920 125 -    764599 ctgttgtagacc-----aaaaaatgcaggcagtc--tttccataagagcatgtgcagacttctaagatatattaagtaaaaaagtgaggcataaaacattgtgtataatctgacccctttagtatacagtgt
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 213613 128 -   2853901 ctgttgaagcca--aaaataaaaagccaccaatc--tttccacaagagcatttgcaaagttctcagatacattgactgaaaaagcaaggcataaaatattgtgtataatctgaccccTTTAGTATACAGTGT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495066 126 -   3282555 ctgtggaagcca--aaaataaaaggcagccagtc--tttccacaagagcatttgcaaagttctaagatacattaagtgaaaaagcaaggcataaaatat--tgtataatccgacccctttagtatacagtgt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       279684 128 -   1024465 ctgttgaagcca--aaaataaaaagcaactaatc--tttccacaagagcatttgcaaagttctaagatacattaagtgaaaaagcaaggcgtaaaatattgtgtataatctgacccttttagtatacagtgt
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       726515 128 -   3745603 ctgttgaagcca--aaaataaaaagcaacggatc--tttccacaagagcatttgcaaagttctaagatacattaagtgaaaaagcaaggcataaaatattgtgtataatctgacccctttagtatacagtgt
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  55166223 103 + 124595110 ---------------AAAAAGAATGCAGCCAGCCCTTTTCCATA-------GTACACA-TTGCAAGATA---TAAGTAAAAAA-CAAGGCATAGAATATTGTG--TAATCTGTCCTCTTTTGTATACAGTAT
i mm10.chr9                 C 0 I 3
s canFam3.chr30                 37478 106 -  40214260 TTATTGTAGTTA------------------------ATTCCATAGGAATGCATACAACTTTCCAAGATGTG-CACGTGAAAAGGCAAGGCATAGAATATTGT-TCTAATCTGGCCCTTTTTGCAAACAGTGT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 912467 246 - 119751181 I
e proCoq1.NW_012149419v1       636102 162 -   2566024 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e otoGar3.GL873530            6752713 144 -  36342412 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I

a score=18350.000000
s hg38.chr15_KI270850v1_alt    177197 4 +    430880 ---AAAA
s panTro5.chr15              17986787 4 -  83230942 ---aaaa
i panTro5.chr15             I 308 C 0
s panPan2.chr15              17212777 4 -  99763055 ---AAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275796 4 +    378907 ---aaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130090 4 + 121039945 ---aaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346776 4 + 169600520 ---AAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107336932 4 - 171882078 ---aaaa
i macFas5.chr7              I 1 C 0
s cerAty1.NW_012002657v1      1802498 4 -   1987038 ---AAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21055205 3 -  24206276 ----aaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284225 4 -   1458659 ---aaaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       719045 4 -    764599 ---aaaa
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 213741 4 -   2853901 ---AAAA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495192 4 -   3282555 ---aaaa
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       279812 4 -   1024465 ---aaaa
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       726643 4 -   3745603 ---aaaa
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  55166329 1 + 124595110 ---A---
i mm10.chr9                 I 3 C 0
s canFam3.chr30                 37584 5 -  40214260 TGTAA--
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 912467 246 - 119751181 I
e proCoq1.NW_012149419v1       636102 162 -   2566024 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e otoGar3.GL873530            6752713 144 -  36342412 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I

a score=28293.000000
s hg38.chr15_KI270850v1_alt    177201 4 +    430880 AA--AT
s panTro5.chr15              17986791 4 -  83230942 aa--aT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17212781 4 -  99763055 AC--AT
i panPan2.chr15             C 0 I 317
s gorGor5.CYUI01015946v1       275800 4 +    378907 aa--at
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130094 4 + 121039945 aa--at
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346780 4 + 169600520 AA--AT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107336936 4 - 171882078 aa--at
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1802502 4 -   1987038 AA--AT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21055208 4 -  24206276 aa--at
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284229 4 -   1458659 aa--at
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       719049 6 -    764599 aaacat
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 213745 4 -   2853901 AA--AT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495196 4 -   3282555 aa--at
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       279816 4 -   1024465 aa--aT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       726647 4 -   3745603 aa--at
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6752857 4 -  36342412 --gcac
i otoGar3.GL873530          I 144 C 0
s mm10.chr9                  55166330 4 + 124595110 CA--AT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 37589 4 -  40214260 AA--AT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 912467 246 - 119751181 I
e proCoq1.NW_012149419v1       636102 162 -   2566024 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I

a score=75448.000000
s hg38.chr15_KI270850v1_alt    177205 13 +    430880 CTATGTCTGTGCT
s panTro5.chr15              17986795 13 -  83230942 CTATGTCTGTGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17213102 13 -  99763055 CTATGTCTGTGCT
i panPan2.chr15             I 317 C 0
s gorGor5.CYUI01015946v1       275804 13 +    378907 ctatgtctgtact
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130098 13 + 121039945 ctatgtctgtgct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60346784 13 + 169600520 CTATGTCTGTGCT
i rheMac8.chr7              C 0 I 8
s macFas5.chr7              107336940 13 - 171882078 ctatgtctgtgct
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1802506 13 -   1987038 CTATGTCTGTGCT
i cerAty1.NW_012002657v1    C 0 I 8
s chlSab2.chr29              21055212 13 -  24206276 ctatgtctgtgct
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284233 13 -   1458659 ctatgtctgtgct
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       719055 13 -    764599 ctatgtctgtgtt
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 213749  9 -   2853901 ----CTATATGCT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495200  9 -   3282555 ----ctatatgct
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       279820  2 -   1024465 -----------CT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       726651  9 -   3745603 ----gtatatgct
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6752861 13 -  36342412 tgcccTCAATGCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55166334 13 + 124595110 ACATATTAATGAT
i mm10.chr9                 C 0 I 4
s canFam3.chr30                 37593 13 -  40214260 CCGTATTTGTGTG
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 912467 246 - 119751181 I
e proCoq1.NW_012149419v1       636102 162 -   2566024 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I

a score=368686.000000
s hg38.chr15_KI270850v1_alt    177218 76 +    430880 AGTTTATACTTACTTTTTTCTCCCCTGGTGGATACAGGAAATTGTGAGTAGTAGAACACAA---------TT--AAAAA---------AGACTGTG
s panTro5.chr15              17986808 76 -  83230942 AGTTTATACTTGCTTTTTTCTCCCCTGTTGGATACAGGAAACTGTGAATAGTAGAACACAA---------TT--AAAAA---------AGACTGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17213115 76 -  99763055 AGTTTATACTTGCTTTTTTCTCCCCTGTTGGATACAGGAAACTGTGAATAGTAGAACACAA---------TT--AAAAA---------AGACTGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275817 76 +    378907 tgtttataCTTACTTTTTTCTCCCCTGGTGGATACAGGAAACTGTGAATAGTAGAACACAA---------TT--AAAAA---------AGactgtg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130111 75 + 121039945 agtttatacttgcTTTTTTCTCCCC-GGTGGATATAGGAAACTGTGAATGGTAGAACACAA---------TT--AAAAA---------AGACTGTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107336953 76 - 171882078 tgtttataCTTACTTTTTTCTCCCCTGGTGGATACAGGAAAC--TGAATAGTAGAACACAA---------TTAAAAAAA---------AAACTGTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21055225 74 -  24206276 tgtttatatTTACTTTTTTCTCCCCTGGTGGATACAGAAAAC--TGAATAGTAGAACACAA---------TT--TAAAA---------AAGCTGTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284246 75 -   1458659 tgtttataCTTACTTTTTTCTCCCCTGGTGGATACAGGAAAC--TGAATAGTAGAACACAA---------TT-AAAAAA---------AAACTGTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       719068 74 -    764599 tgtttataCTTACTTTTTTCTCCCCTGATGGATACGGGAAACTGTGTATAGTAGAACACAA---------TT--TAAAA---------AAAC--TG
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 213758 70 -   2853901 TGTTTATA----CCTCTTTCTTTTCTGGTGCGTACAGGAAACTGTTAATAGTAGGACACAA---------TT--AAAAA-------AAAAAA----
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495209 72 -   3282555 tgtttata----cctcttttttttctggtgggtacaggaaactgttaatagtagGACACAA---------TT--AAAAA-----ACAAAAAA----
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       279822 77 -   1024465 TGTTTATA----CCTCTTTCTTTTCTGGTGGCTACAGGAAACTGTTAATAGTAGGACACAA---------TT--aaaaaaaaaaaaaaaaaa----
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       726660 68 -   3745603 tgtttata----cctctttcttttctggtgggtacaggaaactgttaatagtagGACACAC---------AC--ACAAA---------AAAA----
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6752874 84 -  36342412 TTTTTATACTTGGTTTTTCCCTTCTGGGTGGATACAGAAAACTGTTAATAATAGAACACAGAAAAGTATTTT--TGaaa---------aattcat-
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55166351 79 + 124595110 TAGCTGTGCTTGCATTCTCCTTCCT--GTAAATGTAGGAAGCTGT---TAACAGAACACAGAAAAATACTTT--AAGAG---------TATCGAT-
i mm10.chr9                 I 4 C 0
s canFam3.chr30                 37606 69 -  40214260 GGTTTATA---GTTTTACTCCTCCTGGGTGTGTACAAGAAACTCTTAATAGTAGAACAGAG-------------AGAAG---------ATTTTG--
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 912467 246 - 119751181 I
e proCoq1.NW_012149419v1       636102 162 -   2566024 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=218295.000000
s hg38.chr15_KI270850v1_alt    177294 28 +    430880 ----------------TGGCTTCtgtgccaggacctgtgatagt---
s panTro5.chr15              17986884 28 -  83230942 ----------------TGGCTTCTGTGCCAGGACCTGTGATAAT---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17213191 28 -  99763055 ----------------TGGCTTCTGTGCCAGGACCTGTGATAAT---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275893 28 +    378907 ----------------tggcttctgtgccaggacctgtgataat---
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130186 28 + 121039945 ----------------TGGCTTCTGTGCCAGGACCTGTGGTAAT---
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107337029 28 - 171882078 ----------------TGGCTTCTGTGCCAGGACCTGTGATAAT---
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21055299 28 -  24206276 ----------------TGGCTTCTGTGCCAGGACCTGTGATAAT---
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284321 28 -   1458659 ----------------TGGCTTCTGTGCCAGGACCTGTGATAAT---
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       719142 28 -    764599 ----------------TGGCTTCTGTGCCAGGACCTGTAATAAT---
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 213828 27 -   2853901 -----------------GGCATCTGTGCCAGGCTCTGTGATAAT---
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495281 27 -   3282555 -----------------GGCTTCTGTGCCAGGCTCTGTGATAAT---
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       279899 27 -   1024465 -----------------GTCTTCTGTGCCAGGTTCTGTGATACT---
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       726728 27 -   3745603 -----------------GGCTTCTGTGCCAGGCTCTGTGATAAT---
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       636264 28 -   2566024 ----------------tggcttctgtgccagactctgtgataag---
i proCoq1.NW_012149419v1    I 162 I 3
s otoGar3.GL873530            6752958 28 -  36342412 ----------------tggattctatgccagactccatgatgag---
i otoGar3.GL873530          C 0 I 3
s mm10.chr9                  55166430 26 + 124595110 ----------------TGACTTCTCTG--AAGCTCTGTGATAAA---
i mm10.chr9                 C 0 I 3
s canFam3.chr30                 37675 47 -  40214260 TTTTGTTTTAATTGACTGGCTTCCATATCAGGCTGTGTCATCAGCGG
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 912467 246 - 119751181 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=344883.000000
s hg38.chr15_KI270850v1_alt    177322 44 +    430880 tgggtataaaagacaaaaaaggcatgtccctgtcctctgggaa--g
s panTro5.chr15              17986912 44 -  83230942 TGGGTATAAAAGACAAAAAAGGTATTTCCCTATCCTCTGGGAA--G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17213219 44 -  99763055 TGGGTATAAAAGACAAAAAAGGTATTTCCCTATCCTCTGGGAA--G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275921 44 +    378907 tgggtataaaagacaaaaaaggcatgtccctgtcctctgggaA--G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130214 44 + 121039945 TGGGTATAAAAGACAAAAAAGGCATGTCCCTGTCCTCTGGGAA--G
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107337057 43 - 171882078 TGGGTATAAAAGAT-AAAAAGGCATGTCCATGTCCTCTGGGAA--G
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21055327 43 -  24206276 TGAGTATAAAAGAT-AAAAAGGCATGTCCATGTCCTCTGGGAA--G
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284349 43 -   1458659 TGGGTATAAAAGAT-AAAAAGGCATCTCCATGTCCTCTGGGAA--G
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       719170 44 -    764599 TGGGTATAAAAGACAAAAAAGGCATGTCCATGTCCTCTGGGAA--G
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 213855 43 -   2853901 TGAGTATAAAAGACAAATTAGGCATCTCCCTGTCCTCTGTGAA---
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495308 43 -   3282555 TGAGTGTCAAAGACAAATTAGGCATATCCCTGTCCTCTGTGAA---
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       279926 44 -   1024465 TGAGTTTAAAAGACAAATTAGGCATATCCCTGTCCTCCGTGAAC--
i cebCap1.NW_016107979v1    C 0 I 37
s aotNan1.NW_018511953v1       726755 44 -   3745603 TGAGTATAAAAGACAAATTAGGCATATCGCTGTCCTCTGTGAA-C-
i aotNan1.NW_018511953v1    C 0 I 37
s micMur3.chr3                 912713 43 - 119751181 tgggtataaaagacaaataaggcatgttcctgtcctctgggaa---
i micMur3.chr3              I 246 C 0
s proCoq1.NW_012149419v1       636295 43 -   2566024 tgggtataaaagacaaataaggcgtgtccctgtcctctgggaa---
i proCoq1.NW_012149419v1    I 3 C 0
s otoGar3.GL873530            6752989 43 -  36342412 ttggtattaaaaacaaataagacacatccctgtcctctgggaa---
i otoGar3.GL873530          I 3 C 0
s mm10.chr9                  55166459 39 + 124595110 TGTGTATTCAAAGC---CAAGGTTTGTC--TGTCCTGTGCTAA--T
i mm10.chr9                 I 3 C 0
s canFam3.chr30                 37722 39 -  40214260 TGGGTACAGAAGTC----AAGTCAAATCCCTCTTCTCTGGGAA---
i canFam3.chr30             C 0 C 0
e dasNov3.JH569975              22178 2337 -   2180720 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=245826.000000
s hg38.chr15_KI270850v1_alt    177366 44 +    430880 ggacatgatagtcgaat-gggACTTTTATCAGATTGTTTTCTCCT
s panTro5.chr15              17986956 44 -  83230942 GGACGTGATAATCAAGT-GGGACTTTTATCAGATTATTTTCTCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17213263 44 -  99763055 GGACGTGATAATCAAGT-GGGACTTTTATCAGATTATTTTCTCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       275965 44 +    378907 GGACATGATAGTCGAAT-GGGACTTCTATCAGATTCTTTTCTCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130258 44 + 121039945 GGACATGATAATTGAAT-GGGACGTTTATTGGATTCTTTTCTCCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107337100 44 - 171882078 GGACATGATAATCGAAT-GGGACTTCTATCGGATTCTTTTCTCCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21055370 44 -  24206276 GGACATGATAATTGAAT-GGGACTTCTATCGGATTCTTTTCTCCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284392 44 -   1458659 GGACATGATAATCGAAT-GGGACTTCTATCGGATTCTTTTCTCCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       719214 44 -    764599 GGACATGATAATCGAAT-GGGACTTGTATCGGATTCTTTTCTCCT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 213898 38 -   2853901 ----CCGATAAGCTGAT-GGGACTTCCACTGGATTACCGTCTC--
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495351 38 -   3282555 ----CCGATAAGCTGAT-GGGACTTCCATTGGATTACCGTGTC--
i saiBol1.JH378276          C 0 C 0
s micMur3.chr3                 912756 40 - 119751181 ----ctgataatctaat-gggACTTCTGTCAGATCACTGCCTACT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       636338 40 -   2566024 ----ctgataatctaat-gggACTTATGTCAGATCCCTGCCTACT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6753032 40 -  36342412 ----ctgataatctaat-gggACTCCCATCAGATGACTGCCTCCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55166498 40 + 124595110 -----TGATAACCTAGTGGGGACCTCTATGAGACCACCATTCCTT
i mm10.chr9                 C 0 I 1
s canFam3.chr30                 37761 40 -  40214260 ----CTGATAATCTTAC-GAGAACTTCATCAGGtcactgtctcct
i canFam3.chr30             C 0 C 0
e aotNan1.NW_018511953v1       726799 37 -   3745603 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e cebCap1.NW_016107979v1       279970 37 -   1024465 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=327991.000000
s hg38.chr15_KI270850v1_alt    177410 41 +    430880 GTTTTGATCTTATCACCCTGCCTTGGTCTCCTCCGATCTCT
s panTro5.chr15              17987000 41 -  83230942 GTTTTGATCTTATCACCCTGCCTTAGTCTCCTCCGAGCTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17213307 41 -  99763055 GTTTTGATCTTATCACCCTGCCTTAGTCTCCTCTGAGCTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276009 41 +    378907 GTTTTGATCTTATCACCCTGCCTTGGTCTCCTCCGATCTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130302 41 + 121039945 GTTTTGATCTTATCACCCTGCCTTGGTCTCCTCCGGTCTCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107337144 40 - 171882078 GTTTTGATCTTATCACCC-ACCTTGGTCTCCTCCAATCTCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21055414 40 -  24206276 GTTTTGATCTTATCACCC-GCCTTGGTCTCCTCCAATCTCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284436 40 -   1458659 GTTTTGATCTTATCATCT-GCCTTGGTCTCCTCTGATCTCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       719258 40 -    764599 GTTTTGATCTTATCACCC-GCCTTGGTCTCCTCTGATCTCT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 213936 38 -   2853901 ATTTTTATCTTATCACCCGTCCTGGGT---CTCTGACCTGT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495389 38 -   3282555 ATTTTTATCTTACCAACCTTCCTGGGT---CTCTGACCTGT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280007 38 -   1024465 ATTTTTATCTTATCACCCTTCTTGGGT---CTCTGACCTGT
i cebCap1.NW_016107979v1    I 37 C 0
s aotNan1.NW_018511953v1       726836 38 -   3745603 ATTTTTATCTTATCACCCTTCCTGGGT---CTCTGACCTCT
i aotNan1.NW_018511953v1    I 37 C 0
s micMur3.chr3                 912796 41 - 119751181 GTTTTTATCTTATCACCCTGCCTTGGTCTCATCTGATCTCT
i micMur3.chr3              C 0 I 204
s proCoq1.NW_012149419v1       636378 41 -   2566024 GTTTTTATTTTATCACCCTGCCTTGGTCTCCTCTGATCTCT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6753072 41 -  36342412 GTTTTTATCTTATCACTCTGCCTTGCTTTGCTCTGATCTCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55166539 38 + 124595110 GCTC---TCTTACTATCTCGTCTTGGTCTCCTCTGAGATGC
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 37801 40 -  40214260 gttcctgtctctgaaccctgccttggtcttctcagagctc-
i canFam3.chr30             C 0 C 0
e dasNov3.JH569975              22178 2337 -   2180720 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=22920.000000
s hg38.chr15_KI270850v1_alt    177451 2 +    430880 TC
s panTro5.chr15              17987041 2 -  83230942 TC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17213348 2 -  99763055 TC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276050 2 +    378907 TC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130343 2 + 121039945 TC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107337184 2 - 171882078 TC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21055454 2 -  24206276 TC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284476 2 -   1458659 TC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       719298 2 -    764599 TC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 213974 2 -   2853901 TC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495427 2 -   3282555 TC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280045 2 -   1024465 TC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       726874 2 -   3745603 TC
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       636419 2 -   2566024 tc
i proCoq1.NW_012149419v1    C 0 I 249
s otoGar3.GL873530            6753113 2 -  36342412 TC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55166577 2 + 124595110 TC
i mm10.chr9                 C 0 C 0
e micMur3.chr3                 912837 204 - 119751181 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e canFam3.chr30                 37841 0 -  40214260 C
e cerAty1.NW_012002657v1      1802519 8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797 8 + 169600520 I

a score=1670729.000000
s hg38.chr15_KI270850v1_alt    177453 224 +    430880 TTCCTTGTCCTACTTCTTtcttctcttctcattctgtgctttctctgagtaa--t--ctttgactcccattacttaagtcatgacctg--tgttccagggactcctaaatttgt-------------attcatctccggagtttcaaacccatatatctgt-ctgtataTCATATATGT-T-AGGGAATCTCACTTGGA-GTGACATGGGTGTTCAAAATGATGGTATTTAAATTTTCATGTATTCA
s panTro5.chr15              17987043 221 -  83230942 TTCCTTGGCCTACTTCTTTCTTCTCTTCTCATTCTGTGCTTTCTCTGAGTAA--T--CTTTGACTCCTATTACTTAAGTCATGACCTG--TGTTCCAGGGATTCCTAAATCTGT-------------ATTCATCTCCAGAGTTTCATACCCATATATCTGT-CTGTATATCATATATGT-T-AGGGAATCTCACTTGGC-ATGACATGGGTGTTCAAAATGAT---ATTTAAATTTTCATGTATCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17213350 221 -  99763055 TTCCTTGGCCTACTTCTTTCTTCTCTTCTCATTCTGTGCTTTCTCTGAGTAA--T--CTTTGACTCCTATTACTTAAGTCATGACCTG--TGTTCCAGGGATTCCTAAATCTGT-------------ATTCATCTCCAGAGTTTCATACCCATATATCTGT-CTGTATATCATATATGT-T-AGGGAATCTCACTTGGC-ATGACATGGGTGTTCAAAATGAT---ATTTAAATTTTCATGTATCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276052 224 +    378907 TTCCTTGGCCTACTTCTTTCTTCTCTTTTCATTCTGTGCTTTCTCTGAGTAA--T--CTTTGACTCCCATTACTTAAGTCATGACCTG--TGTTCCAGGGATTCCTAAATCCGT-------------ATTCATCTCCAGAGTTTCAAACCCATATATCTGT-CTGCATATCATATATGT-T-AGGGAATCTCACTTGGA-GTGACATGGGTGTTCAAAATGATGGTATTTAAATTTTCATGTATCCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130345 221 + 121039945 TTCCTTGGCCTACTTCTTTCTTCTCTTCTCATTCTGTGCTTTCTCTGAGTAA--T--CTTTGACTCGTATTACTTAAGTCATGACCTG--TGTTCCAGGGATTCCTAAATCCGT-------------GTGCGTCTCCAGAGTTTCAAACCCATATATCTGT-CTGCATGTCATATATGT-T-AGGGAATCTCACTTGGT-GTGACATGCGTGTTCAAAATGAT---ATTTAAATTTTCATGTATTCA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107337186 222 - 171882078 TTCCTTGGCCTACTTCTTTCTTCTCTTTTCATTCTGTGCTTTCTCTGAGTAA--T--CTTTGACTCCCATTACTTAAGTCATGACCTG--TGTTCCAGGGATTCCTAAACCCAT-------------ATTCATCTC--GAGTTTCAAACCCATATATCTGT-CTGTATATCATATATGT-T-AGGGAATCTCACTTGGA-GTAACATGGGTGTTCAAAATGATGATATTTAAATCTTCATGTATCTA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21055456 224 -  24206276 TTCCTTGGCCTACTTCTTTCTTCTCTTTTCATTCTGTGTTTTCTCTGAGTAA--T--CTTTGACTCCCATTACTTAAGTCATGACCTG--TGTTCCAGGGATTCCTAAATCTGT-------------ATTCATCTCCAGAGTTTCAAGCCCATATATCTGT-CTGTATATCATATATGT-T-AGGGGATCTCACTTGGA-GTAACATGGGTGTTCAAAATGATGATATTTAAATCTTCATGTATCCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284478 222 -   1458659 TTCCTTGGCCTACTTCTTTCTTCTCTTTTCATTCTGTGCTTTCTCTGAGTAA--T--CTTTGACTCCCATTACTTAAGTCATGACCTG--TGTTCCAGGGATTCCTAAATCCAT-------------ATTCATTTC--GACTTTCAAACCCATATATCTGT-CTGTATATCATATATGT-T-AGGGAATCTCACTTGGA-GTAACATGGGTGTTCAAAATGATGATATTTAAATCTTCATGTATCTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       719300 222 -    764599 TTCCTTGGCCTACTTCTTTCTTCTCTTTTCATTCTGTGCTTTCTTTGAGTAA--T--CTTTGACTCCCATTACTTAAGTCATGACCTG--TGTTCCAGGGATTCCTAAATCCAT-------------ATTCATCTC--GAGTTTCAAACCCATATGTCTGT-CTGTATATCATATATGT-T-AGGGAATCTCACTTGGA-GTGACATGGGTGTTCAAAATGATGATATTTAAATCTTCATGTATCTA
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 213976 219 -   2853901 TTCCTTGGCCTGCTTCTTTCTTCTTCTCTCATTTAGTGCTT----TGAATAA--T--CTTTTACTCCCATTACTTTAGTCATGACCTC--TGTTCTAGGGATTCCTAAATCCGC-------------ATTCATTTCCAGAGTTT-AAACCCATATATCTGT-CTGTATATCATACATGT-T-AGGGAGTCTCACTTGGA-GTGCCATGGGTGTTCAAAATGATGACATTTAAATTTGCATTTACCCA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495429 219 -   3282555 TTCTTTGGCCTACTTCTTTCTTCTTTTCTCATTCAGTGCTT----TGAATAA--T--CCTTTACTCCCATGACTTTAGTCATGACCTC--TGTTCTAGGGATTCCTAAATCTGC-------------ATTCATTTCCAGAGTTT-AAACCCATATATCTGT-CTGTATATCATACATGT-T-AGGGAGTCTTACTTGGA-GTGCCATGGGTATTCAAAATGATGACATTTAAATTTGCATTTACCCA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280047 219 -   1024465 TTCCTTGGCCTACTTCTTTCTTCTTTTCTCATTCAGTGCTT----TGAATAA--T--CCTTTACTCCCATTACTTTAGTCATGACCTC--TGTTCTAGGGATTCCTAAATCCGC-------------ATTCATTTCCAGAGTTT-AAACCCATATATCTGT-CTGTATGTCATACCTGT-T-AGGGAGTCTCACTTGGA-GTGCCATGGGTGTTCAAAATGATGACATTTAAATTTGCTATTACCCA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       726876 219 -   3745603 TTCCTTGGCCTACTTCTTTCTTCTTTTCTCATTCAATGCTT----TGAATAA--T--CTTTTACTCCCATTACTTTAGTCATGACCTC--TGTTCTAGGGATTCCTAAATCTGC-------------ATTCATTTCCAGAGTTT-AAACCTATATATCTGT-CTGTATATCATACATGT-T-AGGGAGTCTCACTTGGA-GTGCCATGGGTGTTCAAAATGATGACATTTAAATTTGCATTTACCCA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6753115 233 -  36342412 -ttcttggtccgc----ctcttctctttttagtctctgctttctctgagtaatct--cttctattcccattacttaagtcatgaccta--tatttcagggattcctaaatctgtgtatctagctaaaatttatctt--gagtttcaaacccatatatctgt-ctatgtattatatatgt-taagggaatatcacttggatgtgccatggct-ttccaaataacgacatttaaatttccactcaatct
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55166579 231 + 124595110 TTCCTTGGTATGTCTCTTTATTATCTTTTTATTCTGTGTTTTCTCTGTGCAAGCT--CTTTTACTCTCATTACTTAAGTCATACTTTATTTATTGCAGAGATCCCTAAATCTGTATCTCTAGCCAGAATGTATCTTCAGAGGTTGAAACCCATACACTTATGTTATTGATCCTCTCTATCT-AGGGGATCTTGCTTAGATGTGCCATGGG------ATGTGCT----TGTCAGTTTCAATTTGT---
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 37841 228 -  40214260 --ccttggtct---------tcctcttctcattgcatgctttctgtgagaaa--tcacttttactactgttacttaaatcacggtcta--tattccatggattcctaaatctgtacctttagctaaaatttatgtcttgagtc--aagccggtgtatctgt-ctatatatcctgtagatcc-agggaatctcacttggatgtgccatgactgtttaaaatgactacatctaaatttgagcCTACCTA
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 912837 204 - 119751181 I
e proCoq1.NW_012149419v1       636421 249 -   2566024 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e cerAty1.NW_012002657v1      1802519   8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797   8 + 169600520 I

a score=141821.000000
s hg38.chr15_KI270850v1_alt    177677 19 +    430880 CCTCCTAGCACTCTATCA-G
s panTro5.chr15              17987264 19 -  83230942 CCTCCTAGCACCCTATCA-G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17213571 19 -  99763055 CCTCCTAGCACCCTATCA-G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276276 19 +    378907 CCTCCTAGCACTCTATCA-G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130566 19 + 121039945 CCTTATAGCACTCTATCA-G
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107337408 19 - 171882078 CCTTTTAGCACTGTATCA-G
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21055680 19 -  24206276 CCTGTTAGCACTGTATCA-G
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284700 19 -   1458659 CCTCTTAGCACTGTATCA-G
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       719522 19 -    764599 CCTCTTAGCACTGTATCA-G
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 214195 19 -   2853901 CCTTCTAGCACTGTATCA-G
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495648 19 -   3282555 CCTTCTAGCACTGTATCA-G
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280266 19 -   1024465 CCTTCTAGCACTGTATCA-G
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727095 19 -   3745603 CCTTCTAGCACTGTATCA-G
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 913041 18 - 119751181 CCTCCTAGCACTCCACCA--
i micMur3.chr3              I 204 C 0
s otoGar3.GL873530            6753349 19 -  36342412 cctcctagcactccaccac-
i otoGar3.GL873530          I 1 C 0
s canFam3.chr30                 38069 18 -  40214260 -CCTATGGCACTCCACCA-G
i canFam3.chr30             C 0 C 0
e proCoq1.NW_012149419v1       636421 249 -   2566024 I
e mm10.chr9                  55166810  0 + 124595110 C
e dasNov3.JH569975              22178 2337 -   2180720 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=788602.000000
s hg38.chr15_KI270850v1_alt    177696 80 +    430880 CCCCATCATGTGTCCCATCAGTAATTCTCCTTGTCATTGTGAGTG-GGACAAAATGAAATAATCAAACTAGTCACCCATGC
s panTro5.chr15              17987283 80 -  83230942 CCCCATCATGTGTTCCATCAATAATTCTCCTTGTCATTGTGAGTG-GGACAAAATGAAATAATCAAAGTAGTCACCCATGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17213590 80 -  99763055 CCCCATCATGTGTTCCATCAATAATTCTCCTTGTCATTGTGAGTG-GGACAAAATGAAATAATCAAAGTAGTCACCCATGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276295 80 +    378907 CCCCATCATGTGTTCCGTCAATAATTCTCCTTGTCATTGTGAGTG-GGACAAAATGAAATAATCAAACTAGTCACCCATGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130585 80 + 121039945 CCACATCATGTGTTCCATCAATAATTCTCCTTGTCATTGTGAGTG-GGACAAAATGAAATAATCAAACCAGTCACCCATGC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107337427 80 - 171882078 CCCCATCATGTGTTCCATCAACAATTCTCCTTGTCATTGTGAGTG-GGACAAAATGAAATAATCAAACTAGTCACCCATGC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21055699 80 -  24206276 CCCCATCATGTGTTCCATCAATAATTATCCTTGTCCTTGTGGGTG-GGACAAAATGAAATAATCAAACTAGTCACCCATGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284719 80 -   1458659 TCCCATCATGTGTTCCATCAACAATTCTCCTTGTCATTGTGGGTG-GGACAAAATGAAATAATCAAACTAGTCACCCATGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       719541 80 -    764599 CCCCATCATGTGTTCCATCAATAATTCTCCTTGTCATTGTGGGTG-GGACAAAATGAAATAATCAAACTAGTCACCCATGC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 214214 80 -   2853901 CCCCATCATGCTTTTCCGCAATAATTCTCCTTGTGAGTGTGTGTG-GGACAAAATGAAATAATTAAACTAGTCACCCGTGC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495667 80 -   3282555 CCCCATCATGTGTTTCCTCAGTAATTCTCCTTGTGAGTGTGTGTG-GGACAAAATGAAATAATTAAACTAGTCACCCGTGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280285 80 -   1024465 CCCCATCATGCTTTTCCTCAATAATTCTCCTTGTGAGTGTGTGTG-GGACAAAATGAATTAATTAAACTAGTCACCCTTGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727114 80 -   3745603 CCCCATCATGCTTTTCCTCAATAATTCTCCTTGTGAGTGTGTGTG-GGACAAAATGAAATAATTAAACTAGTCACCCATGC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 913059 78 - 119751181 CCCCATCATGTTTTCTCTCAGTAATTCTCTTTGTGAC--TGTGTG-GGACAAAATGCAGTAATGAAACTAGTCACTCATGC
i micMur3.chr3              C 0 I 111
s proCoq1.NW_012149419v1       636670 80 -   2566024 ccccatcatgttttctctcagtAATTCTCCTTGTGACAGTGTGTG-GGACAAAGTGCAGTAATGAAACTAGTCACTCAGGC
i proCoq1.NW_012149419v1    I 249 C 0
s otoGar3.GL873530            6753368 77 -  36342412 ccttatcatgttttc-ctcaGCAAATCTTTTTGTGT---TGTGGGCAGACAGAATGCAATAATGAAACTAGTCACTCATGC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55166810 66 + 124595110 CTCCATCTTGTTTTCCCTCACTAATTCTC----------TCCGTG-----AAAACGAAACAATGATACTGGTCATCTGTGC
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 38087 78 -  40214260 CCCCACCCT--TTCCCTTCAGTCATTCTCTTTGTGATTATGAGCG-GGACAAGATGAAATAATGAAGCTTGTCACCCATGC
i canFam3.chr30             C 0 C 0
e dasNov3.JH569975              22178 2337 -   2180720 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=160270.000000
s hg38.chr15_KI270850v1_alt    177776 18 +    430880 CTCAACCTGGGAACTGTC
s panTro5.chr15              17987363 18 -  83230942 CTAAACCTGGGAACTGTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17213670 18 -  99763055 CTAAACCTGGGAACTGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276375 18 +    378907 CTAAACCTGGGAACTGTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130665 18 + 121039945 CTAAACCTGGGAACTGTC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107337507 18 - 171882078 GCAAACCTGGGAACTGTC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21055779 16 -  24206276 GCAAACCTGGGAACTG--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284799 18 -   1458659 GCAAACCTGGGAACTGTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       719621 18 -    764599 CCAAACCTGGGAACTGTC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 214294 18 -   2853901 CTAAACCTGGGAACTGTC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495747 18 -   3282555 CTAAACCTGGGAACTGTC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280365 18 -   1024465 CTAAACCTGGGAACTGTC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727194 18 -   3745603 CTAAACCTGGGAACTGTC
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       636750 18 -   2566024 CTGAACGTGGGAGCTGTC
i proCoq1.NW_012149419v1    C 0 I 298
s otoGar3.GL873530            6753445 18 -  36342412 CCAAATGTGGGAACTGTC
i otoGar3.GL873530          C 0 I 2
s mm10.chr9                  55166876 15 + 124595110 CTGGCCCTGGGAACT---
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 38165 16 -  40214260 CTGAACCTGGGAACTA--
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 913137 111 - 119751181 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=439775.000000
s hg38.chr15_KI270850v1_alt    177794 87 +    430880 TTAGCGTTCTTTTATATGCTACTGTTCTCTGACC--------TCCCCCCCAA-------AGTACGTTTCTAAGA-CCTGTCC----TTCTAAATGTCTCTTACTATT
s panTro5.chr15              17987381 86 -  83230942 TTAGCGTTCTTTTATATGCTACTGTTCTCTTA----------TCCCCCCAAA-----CTAGTAAATTTCTAAGA-CCTGTCC----TTCTGAATGT-TCTTACTATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17213688 86 -  99763055 TTAGCGTTCTTTTATATGCTACTGTTCTCTTA----------TCCCCCCAAA-----CTAGTAAATTTCTAAGA-CCTGTCC----TTCTGAATGT-TCTTACTATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276393 90 +    378907 TTAGCGTTCTTTTATATGCTACTGTTCTCTGACC-------TCCCCCCCAAA-----CTAGTACATTTCTAAGA-CCTGTCC----TTCTAAATGTCTCTTACTATT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130683 88 + 121039945 TTAGCGTTCTTTTATATGCTACTGTTCTCTGAC---------CCCCCCCAAA-----CTAGTAAATTTCTAAGA-CCTGTCC----TTCTGAATGTCTCTTATTATT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107337525 97 - 171882078 CTAGCATTCTTTTATATACTACTGCTCTCTGACTGCCCCCCTCCCCCCGAAA-----CTAGTAAATTTCTAAGA-CCTGTCC----TTCTGAATGTCTCTTACTATT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21055795 98 -  24206276 CTAGCATTGTTTTATATACTACTGCTCTCTGACTGCCCCCCTCCCCCTGAAA-----CTAGTAAATTTCTAAGACCCTGTCC----TTCTGAATGTCTCTTACTATT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284817 97 -   1458659 CTAGCATTCTTTTATATACTACTGCTCTCTGACTGCCCCCCTCCCCCCGAAA-----CTAGTAAATTTCTAAGA-CCTGTCC----TTCTGAATGTCTCTTACTATT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       719639 94 -    764599 CTAGTGTTCTTTTATATACTACTGCTCTCTGA---TCCCCACCCCCCACAAA-----CTAGTAAATGTATAAGA-CCTGTCC----TTCTGAATGTCTCTTACTATT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 214312 78 -   2853901 TTGGCGTTCTTTTATATACTACTGTTCCCTGA----------ACCCCC--------------GAATTTCTAAGA-CCTGTCC----TTCTGAATGTCTTTTACTATT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495765 79 -   3282555 TTAGCGTTCTTTTATATACTACTATTCCCTGA----------ACCCCCA-------------GATTTTCTAAGA-CCCGTCC----TTCTGAATGTCTTTTACTATT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280383 79 -   1024465 TTAGCGTTCTTTTATATACCACTGTTCCCTGA----------ACCCCCA-------------AAGTTTCTAAGA-CCTGTCC----TTCTGAATGTCTTTTACTACT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727212 79 -   3745603 TTAGCATTCTTTTATATACTACTTTTCCCTGA----------ACCCTCA-------------AAGTTTCTAAGA-CCTGTCC----TTCTGAATGTCTTTTACTATT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6753465 79 -  36342412 CTAG--TTCTTTTTTACAGCACTGTT--CTGA----------CCCCCTAAGAACTATCTACTAAGTTTCTAAGA-CTTGTCC----AACTA-------CTTTCTA--
i otoGar3.GL873530          I 2 C 0
s mm10.chr9                  55166891 88 + 124595110 TAAGAGTTCTTTTTTATACTTCTGTTCCCCAA----------ACCATAAACT-----CTAGTAACTACCAAAAA-CTTGTTCACTTACCTAAATAGTTTAGACC---
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 38181 90 -  40214260 --AAGGTTC---TGCATACCTAGATTTCCCGACACCTC----CCCTCTCCAAGCTACCTACTGAGTTGCTAAGA-CCTGTCC----GTCTACCT---TCTAAATATT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 913137 111 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=319896.000000
s hg38.chr15_KI270850v1_alt    177881 38 +    430880 TTCCCTGTGATCTCAGTTTCTTCTTCCCATCCCTCAAA
s panTro5.chr15              17987467 38 -  83230942 TTCCCTGTGATCTCAGTTTCTTCTTCCCATCCCTCAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17213774 38 -  99763055 TTCCCTGTGATCTCAGTTTCTTCTTCCCATCCCTCAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276483 38 +    378907 TTCCCTGTGATCTCAGTTTCTTCTTCCCATCCCTCAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130771 38 + 121039945 TTCCCTGTGATCTCAGTTTCTTCTTCCCATCCCTCAGA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107337622 38 - 171882078 TTCCTTGTGATCTCAGTTTCTTCCTCCCATCCCTCAAA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21055893 38 -  24206276 TTCCCTGTGATCTCAGTTTCTTCCTCCCATCCCTCAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       284914 38 -   1458659 TTCCTTGTGATCTCAGTTTCTTTCTCCCATCCCTCAAA
i manLeu1.NW_012105520v1    C 0 M 4910
s colAng1.NW_012118866v1       719733 38 -    764599 TTCCTTGTGATCTCAGTTTCTTCCTCCTATCCCTCAAA
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 214390 38 -   2853901 TTTCGTGTGATCTCAGTTTCTTCTTCCCATTGCTCAAA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495844 38 -   3282555 TTTCCTGTGATCTCAGTTTCTTCCTCCCATTGCTCAAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280462 38 -   1024465 TTTCCTGTGATCTCAGTTTCTTCCTCCCATTGCTCAAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727291 38 -   3745603 TTTCCTGTGATCTCAGTTTCTTCCTCCCATTGCTGAAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 913248 38 - 119751181 TTCCTTGTGATCTTAGTTTCTTCCCCCCATCCCTCAAA
i micMur3.chr3              I 111 I 139
s otoGar3.GL873530            6753544 17 -  36342412 ---------------------ACCCCCTATCCCTCATA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55166979 36 + 124595110 CTCCCTGTGATCTGAGTTTCTTCC-ACAGTCCCTGAA-
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 38271 32 -  40214260 --TCCCACCATCTTAGTTTCTT----CCATCCTTCAAA
i canFam3.chr30             C 0 C 0
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=269656.000000
s hg38.chr15_KI270850v1_alt    177919 58 +    430880 TGCTTTTTGTGTGTGTG--TGGTGGGGGAAGAGAGT----AAAATTGAAATTCGTGGAAAATGT
s panTro5.chr15              17987505 59 -  83230942 TGCTTTTTGTGTGTGTGCGTGGTGGTG-AAGGGAGT----AAAATTGAAATTCATGGAAAATGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17213812 59 -  99763055 TGCTTTTTGTGTGTGTGCGTGGTGGTG-AAGGGAGT----AAAATTGAAATTCATGGAAAATGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276521 58 +    378907 TGCTTTCTGTGTGTGTG--TGGTGGGGGAAGAGAGT----AAAATTGAAATTCGTGGAAAATGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130809 58 + 121039945 TGCTTTTTGTGTGTGTG--TGGTGGGGGAAGGGAGT----AAAATTGAAATTCGCGGATAATGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107337660 58 - 171882078 TGCTTTTTGTGTGTGTG--CGGTGGGGAAGGAGAGT----AAAATTGAAATTCATGGAACTTGT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21055931 58 -  24206276 TGCTTTTTGTGTGTGTG--CGGTGGGGGAGGAGAGT----AAAATTGAAATTCATGGAACATGT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012118866v1       719771 58 -    764599 TGCTTTTTGTGTGTGTG--CAGTGGGGGAAGAGAGT----AAAATTAAAATTCACGGAACATGT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 214428 52 -   2853901 TACTTTTTTTGTGTG-G-------GGGGAAGGGAGT----AAAATGGAAATTCCTGGAAAATGG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495882 53 -   3282555 TACTTTTTTTGTGCGTG-------GGGGAAGGGAGT----AAAATGGAAATTCCTGGAAAATGG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280500 53 -   1024465 TACTTTTTTTGTGTGTG-------GGGGAAGGGAGT----AAAATGGAAATTCCTGGAAAATGG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727329 53 -   3745603 TACTTTCTTTGTGTGTG-------GGGGAAGGGAGT----AAAATGGAAATTCCTGGAAAATGG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6753561 50 -  36342412 TACTTTTTCTTTTGGGG-------GGGCAAGAACAT----AATATTTAAATTTCT---ACATGT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55167015 40 + 124595110 ------------------------GAGGAGGGAAGTGTTAAAAGTTAAACTTCCTGGAAAATAG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 38303 47 -  40214260 CGCTTCTT-------TG------GGGGAGGGAGTGT----AAAGTTGAAATTCCTGAAAGATGT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e manLeu1.NW_012105520v1       284952 4910 -   1458659 M
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=19428.000000
s hg38.chr15_KI270850v1_alt    177977 3 +    430880 ACT
s panTro5.chr15              17987564 3 -  83230942 ACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17213871 3 -  99763055 ACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276579 3 +    378907 ACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130867 3 + 121039945 ACT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107337718 3 - 171882078 ACT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21055989 3 -  24206276 ACT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012118866v1       719829 3 -    764599 ACT
i colAng1.NW_012118866v1    C 0 C 0
s cebCap1.NW_016107979v1       280553 3 -   1024465 ACT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727382 3 -   3745603 ACT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6753611 3 -  36342412 ACT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55167055 3 + 124595110 ACT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 38350 3 -  40214260 ACA
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e calJac3.chrY                 214480 0 -   2853901 C
e dasNov3.JH569975              22178 2337 -   2180720 I
e manLeu1.NW_012105520v1       284952 4910 -   1458659 M
e cerAty1.NW_012002657v1      1802519 8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797 8 + 169600520 I
e saiBol1.JH378276             495935 0 -   3282555 C

a score=66604.000000
s hg38.chr15_KI270850v1_alt    177980 13 +    430880 ACCctgtctttct
s panTro5.chr15              17987567 13 -  83230942 ACCctgtctttct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17213874 13 -  99763055 ACCctgtctttct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276582 13 +    378907 ACCCTGtctttct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130870 13 + 121039945 ACCCTGtctttct
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107337721 13 - 171882078 ACCCTGTCTTTCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21055992 13 -  24206276 ACCCTGTCTTTCT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012118866v1       719832 13 -    764599 ACCctgtctttct
i colAng1.NW_012118866v1    C 0 C 0
s cebCap1.NW_016107979v1       280556 13 -   1024465 ACCCTGTCTTTCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727385 13 -   3745603 ACCCTGTCTTTCT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6753614 13 -  36342412 ACCTTCTTTTTCT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 38353 13 -  40214260 GCCCGAGTTTTCC
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e mm10.chr9                  55167058  0 + 124595110 C
e calJac3.chrY                 214480  0 -   2853901 C
e dasNov3.JH569975              22178 2337 -   2180720 I
e manLeu1.NW_012105520v1       284952 4910 -   1458659 M
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I
e saiBol1.JH378276             495935  0 -   3282555 C

a score=6823.000000
s hg38.chr15_KI270850v1_alt    177993 5 +    430880 tcctt-
s panTro5.chr15              17987580 5 -  83230942 ttctt-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17213887 5 -  99763055 ttctt-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276595 5 +    378907 tcctt-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130883 5 + 121039945 tcctt-
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107337734 5 - 171882078 TTGTT-
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21056005 5 -  24206276 TTGTT-
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012118866v1       719845 5 -    764599 ttgtt-
i colAng1.NW_012118866v1    C 0 C 0
s otoGar3.GL873530            6753627 4 -  36342412 -TGTT-
i otoGar3.GL873530          C 0 I 21
s canFam3.chr30                 38366 5 -  40214260 -TGTTT
i canFam3.chr30             C 0 I 18
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e aotNan1.NW_018511953v1       727398 0 -   3745603 C
e mm10.chr9                  55167058 0 + 124595110 C
e calJac3.chrY                 214480 0 -   2853901 C
e dasNov3.JH569975              22178 2337 -   2180720 I
e cebCap1.NW_016107979v1       280569 0 -   1024465 C
e manLeu1.NW_012105520v1       284952 4910 -   1458659 M
e cerAty1.NW_012002657v1      1802519 8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797 8 + 169600520 I
e saiBol1.JH378276             495935 0 -   3282555 C

a score=44509.000000
s hg38.chr15_KI270850v1_alt    177998 51 +    430880 tctttctttctctctttctctctc---------------tctctctttcttt-ctttcaatgaagtc
s panTro5.chr15              17987585 51 -  83230942 tctttctctctctctctctctct----------------tctttctttcttttcttgcagtgaagtc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17213892 67 -  99763055 tctttctctctgtctctctctctctgtctctctctctcttctttctttcttttcttgcagtgaagtc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276600 51 +    378907 tctttctttctctctttctctctc---------------tctttctttcttt-ctttcAatgaagtc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102130888 31 + 121039945 tctt-----------------------------------tctttctttcttt-ctCTCAatgaagtc
i nomLeu3.chr6              C 0 I 413
s macFas5.chr7              107337739 40 - 171882078 TCAttctttttttcc--------------------------tttttttttct-tttgagatgaagtc
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21056010 46 -  24206276 TCATTCtttttttcct--------ttt------------tttttttttttct-tttgagatgaagtc
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012118866v1       719850 54 -    764599 tcattctttctttctttccttttgttt------------ttgtttttttttt-tttgagatgaaatc
i colAng1.NW_012118866v1    C 0 C 0
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e aotNan1.NW_018511953v1       727398  0 -   3745603 C
e mm10.chr9                  55167058  0 + 124595110 C
e calJac3.chrY                 214480  0 -   2853901 C
e dasNov3.JH569975              22178 2337 -   2180720 I
e canFam3.chr30                 38371 18 -  40214260 I
e cebCap1.NW_016107979v1       280569  0 -   1024465 C
e otoGar3.GL873530            6753631 21 -  36342412 I
e manLeu1.NW_012105520v1       284952 4910 -   1458659 M
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I
e saiBol1.JH378276             495935  0 -   3282555 C

a score=491184.000000
s hg38.chr15_KI270850v1_alt    178049 204 +    430880 tcgc-----tcttgtcgcccaggctggagtacaatggcacaatctcggctcactgcaacctccatctcctgggttcaagtgattctcctgcctcaacctcctgagtagctgggattacaggcacctgccaccatgcccagctaatttttgta-tttttagtagagatgaggtttcatcatgttcaccaggctggtctcgaactcctg----------------------------------------------------------------------------------------------gcc
s panTro5.chr15              17987636 277 -  83230942 tcgcctcactctggtcacccaggctggagtacaatggcacaatctcggctcactgcaacctccacctcctgggttcaagtgattctcgtgcctcaacctcctgagtagctgggattacaggcatctgccaccatgcccagctaatttttgta-tttttagtagagatgaggtttcatcatgttggccaggctggtctcaaactcctgacctcaggtgatccacccacctcggcct---------c-----------------ccaaattgctgggattacaggtgtgagccactgtgcctggcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17213959 277 -  99763055 tcgcctcactctggtcacccaggctggagtacaatggcacaatctcggctcactgcaacctccacctcctgggttcaagtgattctcgtgcctcaacctcctgagtagctgggattacaggcatctgccaccatgcccagctaatttttgta-tttttagtagagatgaggtttcatcatgttggccaggctggtctcaaactcctgacctcaggtgatccacccacctcggcct---------c-----------------ccaaattgctgggattacaggtgtgagccactgtgcctggcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276651 204 +    378907 tcgc-----tcttgtcgcccaggctggagtacaatggcacaatctcggctcactgcaacctccacctcctgggttcaagtgattctcctgcctcaacctcctgagtagctgggattacaggcacctgccaccatgcccagctaatttttgta-tttttagtagagatgaggtttcatcatgttcaccaggctggtctcgaactcctg----------------------------------------------------------------------------------------------gcc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102131332 269 + 121039945 tcgc-----tcttgttgcccaggctggagtacaatggcgcaatctcagctcaccgcaacctccgcctcccaggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcatctgccaccatgcccagctaatttttgta-tttttagtagagatgaggtt---tcatgttggccaggctggtctcaaactcctaacctcaggtgatccgcccacctcggcct---------c---------ccaaattgc--------tgggattacaggtgtgagccaccgtgcctggcc
i nomLeu3.chr6              I 413 C 0
s macFas5.chr7              107337779 272 - 171882078 tcac-----tcttgtcccccaggctggagtgcaatggtgcaatcttggctcactgcaacctccacctcctgggttcaagtgattc-cctgccttagcctcctgagtagctgggattacaggcacctgccaccatgcccagctaatttttgtattttttaatagagatgaggtttcatcatgttggccaggctggtctcaaactcccgacctcgggtgatcctcccacctcagcctccgaaattgc--------------------------tggcattacaggtgtgagccactgtgcccggcc
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21056056 272 -  24206276 tcac-----tcttgtcccccaggctggagtgcaatggtgcaatcttagctcactgcaacctccacctcctgggttcaagcgattc-cctgccttagcctcctgagtagctgggattacaggcacctgccaccatgcccagccaatttttgtattttttaatagagatgaggtttcatcatgttggccaggctggtctcaaactcctgacctcaggtgatcctcccgcctgagcc----------tccaatattgc----------------tggcattacaggtgtgagccaccgtgcccggcc
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012118866v1       719904 272 -    764599 tcac-----tcttgtcccccaggctggagtgcaatggtggaatcttggctcactgcaacctccacctcctgggttcaagtgattc-cctgccttagcctcctgagtagctgggattacagtcacctgccaccatgcccagctaatttttgtattttttaatagagatgaggtttcatcatgttggccaggctggtctcaaactcctgatctcaggtgatcctcccgcctcagcctctgaaattgc--------------------------tggcattacaggtgtgagccactgtgcccggcc
i colAng1.NW_012118866v1    C 0 C 0
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e aotNan1.NW_018511953v1       727398   0 -   3745603 C
e mm10.chr9                  55167058   0 + 124595110 C
e calJac3.chrY                 214480   0 -   2853901 C
e dasNov3.JH569975              22178 2337 -   2180720 I
e canFam3.chr30                 38371  18 -  40214260 I
e cebCap1.NW_016107979v1       280569   0 -   1024465 C
e otoGar3.GL873530            6753631  21 -  36342412 I
e manLeu1.NW_012105520v1       284952 4910 -   1458659 M
e cerAty1.NW_012002657v1      1802519   8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797   8 + 169600520 I
e saiBol1.JH378276             495935   0 -   3282555 C

a score=14940.000000
s hg38.chr15_KI270850v1_alt    178253 4 +    430880 ACTA
s panTro5.chr15              17987913 4 -  83230942 ACTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17214236 4 -  99763055 ACTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276855 4 +    378907 ACTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102131601 4 + 121039945 ACTA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107338051 4 - 171882078 CCTA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21056328 4 -  24206276 ACTA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012118866v1       720176 4 -    764599 ACTA
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 214480 4 -   2853901 ACTA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495935 4 -   3282555 ACTA
i saiBol1.JH378276          C 0 C 0
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e aotNan1.NW_018511953v1       727398 0 -   3745603 C
e mm10.chr9                  55167058 0 + 124595110 C
e dasNov3.JH569975              22178 2337 -   2180720 I
e canFam3.chr30                 38371 18 -  40214260 I
e cebCap1.NW_016107979v1       280569 0 -   1024465 C
e otoGar3.GL873530            6753631 21 -  36342412 I
e manLeu1.NW_012105520v1       284952 4910 -   1458659 M
e cerAty1.NW_012002657v1      1802519 8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797 8 + 169600520 I

a score=55549.000000
s hg38.chr15_KI270850v1_alt    178257 12 +    430880 CCCTGTCTTTCT
s panTro5.chr15              17987917 12 -  83230942 CCCTGTCTTTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17214240 12 -  99763055 CCCTGTCTTTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276859 12 +    378907 CCCTGTCTTTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102131605 12 + 121039945 CCCTGTCTTTCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107338055 12 - 171882078 CCCTGCCTTTCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21056332 12 -  24206276 CCCTGCCTTTCT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012118866v1       720180 12 -    764599 CCCTGCCTGTCT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 214484 12 -   2853901 CCCTGTCTTTCT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495939 12 -   3282555 CCCTGTCTTTCT
i saiBol1.JH378276          C 0 C 0
s mm10.chr9                  55167058 12 + 124595110 CCCTGTTTTTCC
i mm10.chr9                 C 0 C 0
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e aotNan1.NW_018511953v1       727398  0 -   3745603 C
e dasNov3.JH569975              22178 2337 -   2180720 I
e canFam3.chr30                 38371 18 -  40214260 I
e cebCap1.NW_016107979v1       280569  0 -   1024465 C
e otoGar3.GL873530            6753631 21 -  36342412 I
e manLeu1.NW_012105520v1       284952 4910 -   1458659 M
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=175033.000000
s hg38.chr15_KI270850v1_alt    178269 30 +    430880 TGTTGCTTGGTATGACTCCACTACCCTGCT
s panTro5.chr15              17987929 29 -  83230942 TGTTGCTTGGTATGACTC-ACTAACCTGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17214252 29 -  99763055 TGTTGCTTGGTATGACTC-ACTAACCTGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276871 30 +    378907 TGTTGCTTGGTATGACTCCACTACCCTGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102131617 30 + 121039945 TGTTGCTTGGTATGACTCCACTACCCTGCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107338067 30 - 171882078 TGTTGCTTGGTATGACTCCACTACTCTGCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21056344 30 -  24206276 TGTTGCTTGGTATGACTCCACTACCCTGCT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012118866v1       720192 30 -    764599 TGTTGCTTGGTATGACTCCACTACCCTGCT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 214496 30 -   2853901 TGTTGCTTGGTATGAGTCCACTACCCTGAT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495951 30 -   3282555 TGTTGCTTGGTATGAGTCCACTACCCTGAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280569 30 -   1024465 TGTTGCTTGGTATGAGTCCACTACCCTGAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727398 30 -   3745603 TGTTGCTTGGTATGAGTCCACTACCCTGAT
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  55167070 30 + 124595110 TGTGGCTTGGTATGGAGCCATCATACTGCT
i mm10.chr9                 C 0 I 9
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e canFam3.chr30                 38371 18 -  40214260 I
e otoGar3.GL873530            6753631 21 -  36342412 I
e manLeu1.NW_012105520v1       284952 4910 -   1458659 M
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=46848.000000
s hg38.chr15_KI270850v1_alt    178299 9 +    430880 CCCTCTCTC
s panTro5.chr15              17987958 9 -  83230942 GCCTCTCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17214281 9 -  99763055 GCCTCTCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276901 9 +    378907 CCCTCTCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102131647 9 + 121039945 GCCTGTCTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107338097 9 - 171882078 GCCTCTCTC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21056374 9 -  24206276 GCCTCTCTC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012118866v1       720222 9 -    764599 GCCTCTCTC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 214526 9 -   2853901 GCCTCTCTC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             495981 9 -   3282555 GACTCTCTC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280599 9 -   1024465 GCCTCTCTC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727428 9 -   3745603 GCCTCTCTC
i aotNan1.NW_018511953v1    C 0 C 0
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e mm10.chr9                  55167100 9 + 124595110 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e canFam3.chr30                 38371 18 -  40214260 I
e otoGar3.GL873530            6753631 21 -  36342412 I
e manLeu1.NW_012105520v1       284952 4910 -   1458659 M
e cerAty1.NW_012002657v1      1802519 8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797 8 + 169600520 I

a score=11000.000000
s hg38.chr15_KI270850v1_alt    178308 2 +    430880 CC
s panTro5.chr15              17987967 2 -  83230942 CC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17214290 2 -  99763055 CC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276910 2 +    378907 CC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102131656 2 + 121039945 CC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107338106 2 - 171882078 CC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21056383 2 -  24206276 CC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012118866v1       720231 2 -    764599 CC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 214535 2 -   2853901 CC
i calJac3.chrY              C 0 I 1
s cebCap1.NW_016107979v1       280608 2 -   1024465 CC
i cebCap1.NW_016107979v1    C 0 I 1
s aotNan1.NW_018511953v1       727437 2 -   3745603 CC
i aotNan1.NW_018511953v1    C 0 I 1
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e mm10.chr9                  55167100 9 + 124595110 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e canFam3.chr30                 38371 18 -  40214260 I
e otoGar3.GL873530            6753631 21 -  36342412 I
e manLeu1.NW_012105520v1       284952 4910 -   1458659 M
e cerAty1.NW_012002657v1      1802519 8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797 8 + 169600520 I
e saiBol1.JH378276             495990 0 -   3282555 C

a score=1023988.000000
s hg38.chr15_KI270850v1_alt    178310 445 +    430880 CCTGCAGCgggataatttaggaatcagagagactgaagggttgaggaggatatatattattattatttaggtgcaccggcccagtcaaatttaacatctaaaggactgagccctgaacaaagagtcaggttaccttttaaaca-ttttatcgggtc-gggggagatctgtgcagggggaggcatattacagaagcaagaaacaaagacagttattcagttgagacatgcattacattatttcttacttttcaaggaaaaacctgtttttcgact-gagtttatctgtctagtgaccttgcagctgcacagctagagaatcagggtcttcacaatgcctgggagacgaggagagataaggttcactagcctcagaaaaacagacagttaatttttaaaggactccacctctttttctttcttagggggaattgggttttttttttttt---------t
s panTro5.chr15              17987969 442 -  83230942 ACTGCAGTgggataatttaggaatccgagagactgaggggttgaggaggatatatattattatt---taggtgcaccggcccagtcaaatt-aacatctaaaggactgagccctgaacaaagagtcaggttaccttttaagca-ttttgtgggttc-ggggaagatctgtgcaaggggaagcatattacagaagcaagaaacaaagacagttattcagttgagacatgcattacattatttcttacttttcaaggaaaaacatgttttacaacttgagtttatctgtctagtgaccttgcagctgcacagctagagaaacagggtcttcacaatgcctgggagaggaggagagatgaggttcactagcctcagaaaaacaggcagttaatttttaaaggactccacctctttttctttcttaggggggattcggttttttttttttt---------t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17214292 442 -  99763055 ACTGCAGTgggataatttaggaatccgagagactgaggggttgaggaggatatatattattatt---taggtgcaccggcccagtcaaatt-aacatctaaaggactgagccctgaacaaagagtcaggttaccttttaagca-ttttgtgggttc-ggggaagatctgtgcaaggggaagcatattacagaagcaagaaacaaagacagttattcagttgagacgtgcattacattatttcttacttttcaaggaaaaacatgttttacaacttgagtttatctgtctagtgaccttgcagctgcacagctagagaaacagggtcttcacaatgcctgggagaggaggagagatgaggttcactagcctcagaaaaacaggcagttaatttttaaaggactccacctctttttctttcttaggggggattcgattttttttttttt---------t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       276912 449 +    378907 -CTGCAGCgggatactttaggaatcagagagactgaggggttgaggaggatatatattattatt---taggtgcaccggcccagtcagatt-aacatctaaaggactgagccctgaacaaagagtcatgttacgttttaagcatttttgtcgggtc-gggggagatctgtgcagggggaggcatattacagaagcaagaaacaaagacagttattcaattgagacatgcattacattatttctttcttttcaaggaaaaacctgtttttcgacttgagtttatctgtctgttgaccttgcagctgcacagctagagaatcagggttttcacaatgcctgggagaggaggagagataaggttcactagcctcagaaaaacaggcagttaatttttaaaggactccacgtctttttctttcttagggggaattgggttttttttttttt--tttaatgt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102131658 451 + 121039945 CCTGCAATgggataatttaggaatcagagagactgaggggttgaggaggatatatattattatt---taggagcaccggcccagtcaaatt-aacatctaaaggactgagccctgaacaaagagtcaggttaccttttaagca-ttttgtggggtg-gggggagatctgtgcagggggaagcatattacagaagcaagaaacaaagacagttattcagttgagacatgcattacgttatttcttacttttcaaggaaaaacgtgttttacgacttgagtttgtctgtctagtgacctcgcagctgcacagctggagacacagggtcttcgcaatgcctgggagaggaggagagatagggttcactagcctcagaaaaacagacagttaatttttaaaggactccacctctttttctttcttagggtgaattgggttttttgtttttttttttaacat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107338108 443 - 171882078 CCTGCAGCAggataatttaggaatcagagagactgaggggttgatgaggatatatattatcatt---taggtgccctggcccagtcagatt-aacatctaaaggactgagccctgaacaaagagtcaggttaccttttaagca-ttttgtggggtagaggggagatctgtgcagggggaagcatattacagaagcaagaaacaaagacagttattcagttgagacatgcattacattgtttcttacttttcaaggaaaaacatgttttacaacttgagtttatctgtctagtgaccttgcagctgcacagctagagaaacagggtcttcacaatgcctgggaaaggaggagagataaggctcactagcctcagaaaaacaagcagttaatttttaaaggactccacctctttttcttttctagggggaattggtttttgtttgtttt---------t
i macFas5.chr7              C 0 I 6
s chlSab2.chr29              21056385 442 -  24206276 CCTGCAGCgggataatttaggaatcagagagactgaggggttgaggaggatatatattattatt---taggtgccctggcccagtcagatt-aacatctaaaggactgagcgctgaacaaagagtcaggttaccttttaagca-ttttgtggggta-aggggagatctgcacagggagaagcatattacagaagcaagaaacaaagacagttattcaattgagacatgcattacattgtttcttacttttcaaagaaaaacctattttatgacttgagtttatctgtctagtgaccttgcagctgcacagctagagaaacagggccttcacaatgtctgggaaaggaggagagataaggctcacttgcctcagaaaaacaagcagttaatttttaaaggactccacctctttttcttttttagggggaattggtttttttttttttt---------t
i chlSab2.chr29             C 0 I 132
s colAng1.NW_012118866v1       720233 443 -    764599 CCTGCAGCgggataatttaggaatcagagagactgatgggttgatgaagatatgtattattatt---taggtgcactggcccagtcagatt-aacatctaaaggactgaaccctgaacaaagagtcaggttacctttttagca-ttttgtggggtagaggggagatctgtgcagggagaagcatattacagaagcaagaaacaaagacagttatccagttgagacatgcattacattgtctcttacttttcaaagaaaaacatgttttacaaattgagtttatctgtctagtgaccttgcagcttcacagctagagaaacagggtcttcacaatgcctgggaaaggaggagagataaggctcactagcctcagaaaaacaggcagttaatttttaaaggactccacctctttttattttctagggggaattggtttttttttttttt---------t
i colAng1.NW_012118866v1    C 0 I 4
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e aotNan1.NW_018511953v1       727439   1 -   3745603 I
e mm10.chr9                  55167100   9 + 124595110 I
e calJac3.chrY                 214537   1 -   2853901 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e canFam3.chr30                 38371  18 -  40214260 I
e cebCap1.NW_016107979v1       280610   1 -   1024465 I
e otoGar3.GL873530            6753631  21 -  36342412 I
e manLeu1.NW_012105520v1       284952 4910 -   1458659 M
e cerAty1.NW_012002657v1      1802519   8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797   8 + 169600520 I
e saiBol1.JH378276             495990   0 -   3282555 C

a score=508808.000000
s hg38.chr15_KI270850v1_alt    178755 313 +    430880 ataactgagtttttgcttacacattctttTT----ATTAttattattatactttaagttctagggtacatttgcataacgttcaggtttgttacatatgtatacatgtgccatgttggtgtcctgcacccattaactcatcatttacattaggtata---------------cctcccccctcccccccaccccacaacaggtccccgtgtgtgatgttccccatcctgtgtccaagtgttttcattgttcaattctgacctatgagtgagaacatgcagtgtttggttttctgtccttgagatagtttgctcagaatgatggtttccagct
s panTro5.chr15              17988411 315 -  83230942 acaaac-agtgtttgcttacacattctttTTTAttattattatttttatactttaagttctaggatacatatgcataatgtggaggttttttacatatgtatacacgtgccatgttggtatgctgtacccattaactcatcatttacattaggtata---------------cctctcacctcccccc-accccacaacaggccccagtgcatgatgttccccatcctgtgtccaagtgttttcattgttcagttcccacctatgagtgagaacatgtggtgtttggttttctgtccttgcgatagtttgctgagaatgatggtttccagct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17214734 315 -  99763055 acaaac-agtgtttgcttacacattctttTTTATTATTAttatttttatactttaagttctaggatacatatgcataatgtggaggttttttacatatgtatacacgtgccatgttggtatgctgtacccattaactcatcatttacattaggtata---------------cctctcacctcccccc-accccacaacaggccccagtgcatgatgttccccatcctgtgtccaagtgttttcattgttcagttcccacctatgagtgagaacatgtggtgtttggttttctgtccttgcgatagtttgctgagaatgatggtttccagct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       277361 309 +    378907 acaactgagtttttgcttacacattctttTT-------Attattattatactttaagttctagggtacatgtgcataacgtgcaggtttgttacatatgtatacatgtgccatgttggtgtcctgcacccattaactcgtcatttacattaggtata---------------cctcccccctcccccc-accccacaacaggcccccgtgtgtgatgttccccatcctgtgtccaagtgttttcattgttcagttctgacctatgagtgagaacatgcagtgtttggttttctgtccttgtgatagtttgctcagaatgatggtttccagct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102132109 310 + 121039945 acaaatgagtttttgcttacacattgttttt------tattattattatactttaagttctagggtacatgtgcataatgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcatcatttacattaggtata---------------cctcccccctcccccc-accccacaacaggccctggtgtgtgatgttccccatcctgtgtccaagtgttttcattgttcaattcccacctatgagtgagaatgtgtggtgtttggttttctgtccttgtgatagtttgctcagaatgatggtttccagct
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107338557 327 - 171882078 acagctgagtttttgcttacacattcttttt-----tttttttaattACactttaagttctagggtacatgtgcataatgtgcagttttgtcacatatgtatacatgtaccatgttggtgtgctgcacctattaacttgtcatttacattaggtatatctcctaatgctatccctccccactcccccccaccctacgacaggccccagtgtgtgatgttccccatcctgtatccaagtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttctgtccttgtgatagtttgctgagaatgatggtttccagct
i macFas5.chr7              I 6 C 0
s colAng1.NW_012118866v1       720680 327 -    764599 acagctgagtttttgcttacacattcttttt-----tttttttaattACactttaagttctagggtacatgtgcataatgtgcagttttgtcacatatgtatacatgtaccatgttggtgtgctgcacccattaagttgtcatttacattacgtatatctcctaatgctatccctccccactcccctccaccctacgacaggccccggtgtgtgatgttccccatcctgtgtccaagtgttctgattgttcaattcccacctatgagtgagaacatgcggtgtttggttttttgtccttgtgatagtttgcagagaatgatggtttccagct
i colAng1.NW_012118866v1    I 4 I 383
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e aotNan1.NW_018511953v1       727439   1 -   3745603 I
e mm10.chr9                  55167100   9 + 124595110 I
e calJac3.chrY                 214537   1 -   2853901 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e canFam3.chr30                 38371  18 -  40214260 I
e cebCap1.NW_016107979v1       280610   1 -   1024465 I
e otoGar3.GL873530            6753631  21 -  36342412 I
e manLeu1.NW_012105520v1       284952 4910 -   1458659 M
e chlSab2.chr29              21056827 132 -  24206276 I
e cerAty1.NW_012002657v1      1802519   8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797   8 + 169600520 I
e saiBol1.JH378276             495990   0 -   3282555 C

a score=489283.000000
s hg38.chr15_KI270850v1_alt    179068 386 +    430880 tcacccatgtccctacaaaggacatgaattcatc----cttatggctgcatggtattccatggtgtatatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgcttttgtgaatggtgccgcgataaacatacgtgtgcatatgtgtttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaacggtatttctagttctagatcctcgaggaatcaccacactgtcttccacgatggctgaactagtttacagccccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatggttgcca
s panTro5.chr15              17988726 390 -  83230942 tcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtgtatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgccgcactaaacatatgtgtgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccttgaggaattgccacactgtcttccacaatggttgaactagtttacagttccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcgcctgttgtttcctgactttttaatggttgcca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17215049 390 -  99763055 tcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtgtatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgccgcactaaacatatgtgtgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccttgaggaattgccacactgtcttccacaatggttgaactagtttacagttccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcgcctgttgtttcctgactttttaatggttgcca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       277670 386 +    378907 tcacccatgtccctacaaaggacatgaattcatc----cttatggctgcatggtattccatggggtatatgtgccacattttcttaatccagtctatcattgatggatatttgggttggttccaagtctttgcttttgtgaatggtgccacgataaacatacgtgtgcatatgtgtttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggttgggtcaaatggtacttctagttctagatccttgaggaatcaccacactgtcttccacaatggctgaactagtttacagccccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatggttgcca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102132419 385 + 121039945 tcatccatgtcccaacaaaggacatgaagtcatc-ctttttatggctgcatagtattccatggtgtatctgtgccacattttcttaatccagtgtatcattgatggacatttgggttggttccaagtctttgcctttgtgaatagtgccacaataaacat--gtgtgcatgtgtctttttagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttgtagttctagatccttgaggaatcgccacactgtcttccacaatggttgaactagtttacagccccaccaacagtgt--aagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatggttgcca
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107338884 389 - 171882078 gcatccacgtccctacaaaggacatgaactcatc-ctttttatggctgcatagtattctatggtgtatatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatggtgccacaataaacatatgtgtgcatgtgtctttatagcatcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagattattgaggaatcaccacactgtcttccacaatggttgaacgagcttacagtcccaccaacagtgtaaaagtgttcctatttctcaacaacctatccagcacctgttgtttcctgatttttttatgatcaccc
i macFas5.chr7              C 0 C 0
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e aotNan1.NW_018511953v1       727439   1 -   3745603 I
e mm10.chr9                  55167100   9 + 124595110 I
e calJac3.chrY                 214537   1 -   2853901 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e canFam3.chr30                 38371  18 -  40214260 I
e cebCap1.NW_016107979v1       280610   1 -   1024465 I
e otoGar3.GL873530            6753631  21 -  36342412 I
e colAng1.NW_012118866v1       721007 383 -    764599 I
e manLeu1.NW_012105520v1       284952 4910 -   1458659 M
e chlSab2.chr29              21056827 132 -  24206276 I
e cerAty1.NW_012002657v1      1802519   8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797   8 + 169600520 I
e saiBol1.JH378276             495990   0 -   3282555 C

a score=454639.000000
s hg38.chr15_KI270850v1_alt    179454 293 +    430880 ttctaactggtctgagatggtgtctcattgtagttttgatttgcatttctctgatggccagtgatgatgagtgttttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcacccacttgttgatggggttgcttgatttttttcttgtaaatttgttttaagttctttgtagattctggatattagccttttgtcagaggggtagattgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagtttcACATT
s panTro5.chr15              17989116 271 -  83230942 ttctaactggtgtgagatggtatctcattgtggttttgatttgcattgctctgatggccagtgatgatgggtgttttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtctctgtt---------------------gatggggttgtttgatttttttcttgtaaatttgttt-aagttctttgtagattctggatattagtcctttgtcagaggggaagattgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagtttcACATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17215439 271 -  99763055 ttctaactggtgtgagatggtatctcattgtggttttgatttgcattgctctgatggccagtgatgatgggtgttttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtctctgtt---------------------gatggggttgtttgatttttttcttgtaaatttgttt-aagttctttgtagattctggatattagtcctttgtcagaggggaagattgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagtttcACATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       278056 291 +    378907 ttctaactggtctgagatggtgtctcattgtggttttgatttgcatttctttgatagccagtgatgatgggtgttttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcacccacttgttgatggggttgcttga-ttttttcttgtaaatttgttttaagttctttgtagattctggatattagccttttgtcag-ggggtagattgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagtttcACATT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102132804 289 + 121039945 ttctaactggtgtgaaatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagtgttttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtttctgttcatatccttcacccacttattgttggag----ttgatttttttctcgtacgtttgttttaagttctttgtagattctggatattagccctttgtcagaggggtagattgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagtttcACATT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107339273 272 - 171882078 ttctaactggtgtgagatggtatctcattgtggttttgatttgcatttctc-------------tgatgagcattttttcatgtgtctattgactgcataaatgtcttcttttgagaaatgtctgttcatatccttcaccc-ctttttgatggggtggtttga-ttttttcttgtaaattt-----aagttctttgtagtttctggatattagccctttgtcagatgagtagattgcaaaaa-tttctcccattctgtaggttgcctgttcactctgatggtagtttcACATT
i macFas5.chr7              C 0 I 323
s colAng1.NW_012118866v1       721390 286 -    764599 ttctaactggtgtgagatggtgtgtcattgtggttttgatttgcatttctctgatgaccactgttgatgagcattttttcatgtgtctattgactgcataaatgtcttcttttgagaagtgtctgttcatatcctttgacc-ctttttgatggggttgtttga-ttttttcttgtaaattt-----aagttgtttgtagattctggatattagctctttgtcagatgagtagattgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagtttcACATT
i colAng1.NW_012118866v1    I 383 C 0
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e aotNan1.NW_018511953v1       727439   1 -   3745603 I
e mm10.chr9                  55167100   9 + 124595110 I
e calJac3.chrY                 214537   1 -   2853901 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e canFam3.chr30                 38371  18 -  40214260 I
e cebCap1.NW_016107979v1       280610   1 -   1024465 I
e otoGar3.GL873530            6753631  21 -  36342412 I
e manLeu1.NW_012105520v1       284952 4910 -   1458659 M
e chlSab2.chr29              21056827 132 -  24206276 I
e cerAty1.NW_012002657v1      1802519   8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797   8 + 169600520 I
e saiBol1.JH378276             495990   0 -   3282555 C

a score=15540.000000
s hg38.chr15_KI270850v1_alt    179747 6 +    430880 CTTTAA
s panTro5.chr15              17989387 6 -  83230942 CTTTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17215710 6 -  99763055 CTTTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       278347 6 +    378907 CTTTAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133093 6 + 121039945 CTTTAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107339868 6 - 171882078 CTTTAA
i macFas5.chr7              I 323 C 0
s manLeu1.NW_012105520v1       289994 6 -   1458659 CTTTAA
i manLeu1.NW_012105520v1    M 4910 C 0
s colAng1.NW_012118866v1       721676 6 -    764599 CTTTAA
i colAng1.NW_012118866v1    C 0 C 0
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e aotNan1.NW_018511953v1       727439 1 -   3745603 I
e mm10.chr9                  55167100 9 + 124595110 I
e calJac3.chrY                 214537 1 -   2853901 I
e dasNov3.JH569975              22178 2337 -   2180720 I
e canFam3.chr30                 38371 18 -  40214260 I
e cebCap1.NW_016107979v1       280610 1 -   1024465 I
e otoGar3.GL873530            6753631 21 -  36342412 I
e chlSab2.chr29              21056827 132 -  24206276 I
e cerAty1.NW_012002657v1      1802519 8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797 8 + 169600520 I
e saiBol1.JH378276             495990 0 -   3282555 C

a score=26456.000000
s hg38.chr15_KI270850v1_alt    179753 9 +    430880 TTTCTTTTA
s panTro5.chr15              17989393 9 -  83230942 TTTCTTTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17215716 9 -  99763055 TTTCTTTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       278353 9 +    378907 TTTCTTTTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133099 9 + 121039945 TTTCTTTTA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107339874 9 - 171882078 TTTCTTTTA
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       290000 9 -   1458659 TTTCTTTTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       721682 9 -    764599 TTTCTTTTA
i colAng1.NW_012118866v1    C 0 C 0
s dasNov3.JH569975              24515 9 -   2180720 TTTCTTGTT
i dasNov3.JH569975          I 2337 C 0
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e aotNan1.NW_018511953v1       727439 1 -   3745603 I
e mm10.chr9                  55167100 9 + 124595110 I
e calJac3.chrY                 214537 1 -   2853901 I
e canFam3.chr30                 38371 18 -  40214260 I
e cebCap1.NW_016107979v1       280610 1 -   1024465 I
e otoGar3.GL873530            6753631 21 -  36342412 I
e chlSab2.chr29              21056827 132 -  24206276 I
e cerAty1.NW_012002657v1      1802519 8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797 8 + 169600520 I
e saiBol1.JH378276             495990 0 -   3282555 C

a score=11719.000000
s hg38.chr15_KI270850v1_alt    179762 4 +    430880 ATTC
s panTro5.chr15              17989402 4 -  83230942 ATTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17215725 4 -  99763055 ATTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       278362 4 +    378907 ATTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133108 4 + 121039945 ATTC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107339883 4 - 171882078 ATTC
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       290009 4 -   1458659 ATTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       721691 4 -    764599 ATTC
i colAng1.NW_012118866v1    C 0 C 0
s canFam3.chr30                 38389 4 -  40214260 ACTG
i canFam3.chr30             I 18 I 3
s dasNov3.JH569975              24524 4 -   2180720 GCTC
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e aotNan1.NW_018511953v1       727439 1 -   3745603 I
e mm10.chr9                  55167100 9 + 124595110 I
e calJac3.chrY                 214537 1 -   2853901 I
e cebCap1.NW_016107979v1       280610 1 -   1024465 I
e otoGar3.GL873530            6753631 21 -  36342412 I
e chlSab2.chr29              21056827 132 -  24206276 I
e cerAty1.NW_012002657v1      1802519 8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797 8 + 169600520 I
e saiBol1.JH378276             495990 0 -   3282555 C

a score=22124.000000
s hg38.chr15_KI270850v1_alt    179766 8 +    430880 CTGTTTCA
s panTro5.chr15              17989406 8 -  83230942 CTGTTTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17215729 8 -  99763055 CTGTTTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       278366 8 +    378907 CTGTTTCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133112 8 + 121039945 CTGTTTCA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107339887 8 - 171882078 CTGTTTCA
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       290013 8 -   1458659 CTGTTTCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       721695 8 -    764599 TTGTTTCA
i colAng1.NW_012118866v1    C 0 C 0
s otoGar3.GL873530            6753652 8 -  36342412 CTGCCTCT
i otoGar3.GL873530          I 21 C 0
s canFam3.chr30                 38396 5 -  40214260 CTGCT---
i canFam3.chr30             I 3 C 0
s dasNov3.JH569975              24528 7 -   2180720 -TACTGCA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e aotNan1.NW_018511953v1       727439 1 -   3745603 I
e mm10.chr9                  55167100 9 + 124595110 I
e calJac3.chrY                 214537 1 -   2853901 I
e cebCap1.NW_016107979v1       280610 1 -   1024465 I
e chlSab2.chr29              21056827 132 -  24206276 I
e cerAty1.NW_012002657v1      1802519 8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797 8 + 169600520 I
e saiBol1.JH378276             495990 0 -   3282555 C

a score=8635.000000
s hg38.chr15_KI270850v1_alt    179774 3 +    430880 CCC-
s panTro5.chr15              17989414 3 -  83230942 CCC-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17215737 3 -  99763055 CCC-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       278374 3 +    378907 CCC-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133120 3 + 121039945 CCC-
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107339895 3 - 171882078 CTC-
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       290021 3 -   1458659 CCC-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       721703 3 -    764599 CCC-
i colAng1.NW_012118866v1    C 0 C 0
s saiBol1.JH378276             495990 3 -   3282555 CCT-
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6753660 3 -  36342412 CCT-
i otoGar3.GL873530          C 0 I 1
s canFam3.chr30                 38401 3 -  40214260 CCC-
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              24535 3 -   2180720 -CTG
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e aotNan1.NW_018511953v1       727439 1 -   3745603 I
e mm10.chr9                  55167100 9 + 124595110 I
e calJac3.chrY                 214537 1 -   2853901 I
e cebCap1.NW_016107979v1       280610 1 -   1024465 I
e chlSab2.chr29              21056827 132 -  24206276 I
e cerAty1.NW_012002657v1      1802519 8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797 8 + 169600520 I

a score=9100.000000
s hg38.chr15_KI270850v1_alt    179777 1 +    430880 C
s panTro5.chr15              17989417 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17215740 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       278377 1 +    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133123 1 + 121039945 C
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107339898 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       290024 1 -   1458659 C
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       721706 1 -    764599 C
i colAng1.NW_012118866v1    C 0 C 0
s saiBol1.JH378276             495993 1 -   3282555 C
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280611 1 -   1024465 C
i cebCap1.NW_016107979v1    I 1 C 0
s aotNan1.NW_018511953v1       727440 1 -   3745603 C
i aotNan1.NW_018511953v1    I 1 C 0
s otoGar3.GL873530            6753664 1 -  36342412 C
i otoGar3.GL873530          I 1 C 0
s canFam3.chr30                 38404 1 -  40214260 C
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              24538 1 -   2180720 C
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e mm10.chr9                  55167100 9 + 124595110 I
e calJac3.chrY                 214537 1 -   2853901 I
e chlSab2.chr29              21056827 132 -  24206276 I
e cerAty1.NW_012002657v1      1802519 8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797 8 + 169600520 I

a score=25432.000000
s hg38.chr15_KI270850v1_alt    179778 3 +    430880 AGC
s panTro5.chr15              17989418 3 -  83230942 AGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17215741 3 -  99763055 AGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       278378 3 +    378907 AGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133124 3 + 121039945 AGC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107339899 3 - 171882078 AGC
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       290025 3 -   1458659 AGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       721707 3 -    764599 AGC
i colAng1.NW_012118866v1    C 0 C 0
s saiBol1.JH378276             495994 3 -   3282555 AGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280612 3 -   1024465 AGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727441 3 -   3745603 AGC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6753665 3 -  36342412 AAC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55167109 3 + 124595110 AGC
i mm10.chr9                 I 9 C 0
s canFam3.chr30                 38405 3 -  40214260 GGC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              24539 3 -   2180720 AAC
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e calJac3.chrY                 214537 1 -   2853901 I
e chlSab2.chr29              21056827 132 -  24206276 I
e cerAty1.NW_012002657v1      1802519 8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797 8 + 169600520 I

a score=249779.000000
s hg38.chr15_KI270850v1_alt    179781 33 +    430880 ACTCCTGTAG--CCCCTTCTGTGCCAGAGGTCAGA
s panTro5.chr15              17989421 33 -  83230942 ACTCCTGTAG--CCCCTTCTGTGCCAGAGGTCAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17215744 33 -  99763055 ACTCCTGTAG--CCCCTTCTGTGCCAGAGGTCAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       278381 33 +    378907 ACTCCTGTAG--CCCCTTCTGTGCCAGAGGTCAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133127 33 + 121039945 ACTCCTGTAG--CCCCTTCTGTGCCAGCGGTCAGA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107339902 33 - 171882078 CCTCCTATAG--TCCCTTCTGTGCTAGAGGTCAGA
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       290028 33 -   1458659 CCTCCTGTAG--CCCCTTCTGTGCTAGAGGTCAGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       721710 33 -    764599 CCTCCTGTAG--CCCCTTCTGTGCTAGAGGTCAGA
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 214538 33 -   2853901 ACTCCTGTAG--CTCCTTCTGTGCCAGAGGTCAGA
i calJac3.chrY              I 1 C 0
s saiBol1.JH378276             495997 33 -   3282555 ACTCCTGTAG--CTCCTTCTGTGCCAGAGGTCAGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280615 33 -   1024465 ACTCCTGTAG--CTCCTTCTGTGCCAGAGGTCAGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727444 33 -   3745603 ACTCCTGTAG--CTCCTTCTGTGCCAGAGGTCAGA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6753668 30 -  36342412 TCTCCTGTAG--CTC---CTGTGCCAGGAGTTGGA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55167112 25 + 124595110 ACTGCTGCAG----------GGTCCTGAGGTGGGA
i mm10.chr9                 C 0 I 3
s canFam3.chr30                 38408 33 -  40214260 ACGCCCATAG--CTCTTCCTTGGCCGGGGGTTGGA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              24542 35 -   2180720 CTTTCTGTAGCACTCCTCCTGTGCCAATGGTTGGA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 913286 139 - 119751181 I
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e chlSab2.chr29              21056827 132 -  24206276 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=224450.000000
s hg38.chr15_KI270850v1_alt    179814 25 +    430880 G-----TGTCCAGGTCTGTGTCCAGATCAC
s panTro5.chr15              17989454 25 -  83230942 G-----TGTCCAGGTCTGTGTCCAGATCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17215777 25 -  99763055 G-----TGTCCAGGTCTGTGTCCAGATCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       278414 25 +    378907 G-----TGTCCAGGTCTGTGTCCAGATCAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133160 25 + 121039945 G-----TGTCGAGGTCTGTGTCCAGATGAC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107339935 30 - 171882078 GTGTCCTGTCCAGGTCTGTGTCCAGATCGC
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       290061 30 -   1458659 GTGTCCTGTCCAGGTCTGTGTCCAGATCGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       721743 30 -    764599 GTGTCCTGTCCAGGTCTGTCTCCAGATCAC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 214571 25 -   2853901 G-----TTTCCAGGTCTGTGTCCAGATGGC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             496030 25 -   3282555 G-----TGTCCAGGTCTGTGTCCAGATGGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280648 25 -   1024465 G-----TGTCCAGATCTGTGTCCAGATGGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727477 25 -   3745603 G-----TGTCCAGGTCTGTGTCCAGATGGC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 913425 25 - 119751181 G-----TGTCCAGGTCTGTGTCTGGATCAC
i micMur3.chr3              I 139 C 0
s otoGar3.GL873530            6753698 25 -  36342412 G-----TGTCCAGGTCTATGTCCAGATCAC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55167140 25 + 124595110 G-----CGGTCAGGGCTGTTTCCTGGCCAT
i mm10.chr9                 I 3 C 0
s canFam3.chr30                 38441 25 -  40214260 G-----TGTCTGGGTCTGTGTCCAGGTCAC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              24577 24 -   2180720 G-----TGTCCAGG-CTGCGTCCAGGTCAC
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       636768 298 -   2566024 I
e chlSab2.chr29              21056827 132 -  24206276 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=591065.000000
s hg38.chr15_KI270850v1_alt    179839 74 +    430880 CCTGCCTCATCTTCATTATATACTTAGCACAAAACAGAGCACATTGG-GTGCATA-ATGAATCCACA------CTAGGCCTT
s panTro5.chr15              17989479 74 -  83230942 CCTGCCTCATCTTCATTATATACTTAGCACAAAACAGAGCACATTGG-GTGCATA-ATGAATCCACA------CTAGGGCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17215802 74 -  99763055 CCTGCCTCATCTTCATTATATACTTAGCACAAAACAGAGCACATTGG-GTGCATA-ATGAATCCACA------CTAGGGCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       278439 74 +    378907 CCTGCCTCATCTTCATTATATACTTAGCACAAAACAGAGCACATTGG-GTGCATA-ACGAATCCTCA------CTGGGGCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133185 74 + 121039945 CCTGCCTCATCTTCATTATGTACTTAGCACAAAACAGAGCACACTGG-GTGCATA-ACGAATCCACA------CTGGGGCTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107339965 74 - 171882078 CCTGCCTCATCTTCATTATGTACTTAGCACAAAGCAGAGCACATTGG-GTGCATA-ACAAATCCACA------CTGGGGCTT
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       290091 74 -   1458659 CCTGCCTCATCTTCATTATGTACTTAGCACAAAGCAGAGCACATTGG-GTGCATA-ACAAATCCACA------CTGGGGCTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       721773 74 -    764599 CCTGCCTCATCTTCATTATGTACTTAGCACAAAGCAGAGCACATTGG-GTGCATA-ACAAATCCACA------CTGGGGCTT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 214596 74 -   2853901 TCTGCCTCATCTTCATTATGTACTTAGCATAAAACAGAGTGCATCAG-GTGCATA-ACAAATCCATA------CTGGGAGCT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             496055 74 -   3282555 CCTGCCTCATCTTCATTATGTACTTAGCATAAAACAGAGTGCATCAG-GTGCATA-ACAAATCCACA------CTGGGAGCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280673 74 -   1024465 CCTGCCTCATCTTCATTATGTACTTAGTATAAAACAGAGTGCATCAG-GTGCATA-ACAAATCCACA------CTGGGAGCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727502 74 -   3745603 CCTGCCTCATCTTCATTATGTACTTAGCATAAAACAGAGTGCATCAG-GTGCATA-ACAGATCCACA------CTGGGAGCT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 913450 67 - 119751181 CCTGCCTCATCTTCATTTTGTCCTTAGCACAAAA-------CATTGG-ATGGATA-CTAAATCCACA------GTGGGGCTT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       637066 74 -   2566024 CCTGCCTCATCTTGATTATGTCCTTAGCACAAAACAGAGCTCAGTGG-ATGGGTA-ACAAATCCACA------GTGGGGCTT
i proCoq1.NW_012149419v1    I 298 C 0
s otoGar3.GL873530            6753723 73 -  36342412 CCTGCCTTA-CTTCATTATGTACTTAGCAGAAAACAGAGCTTATTGGAATAGATA--CAGATCCCCC------GTGGGACTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55167165 58 + 124595110 CCTG--TCATC-TCATGAAGTACCTAC---------------------CTACACACACACATCCACAGACGTGGCGGCCCTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 38466 56 -  40214260 CCCTTCTCATCCTCATTATGTTCTT---------CTGAGCTTATCGG-AGGGCTA----AATCCACA------GTA------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              24601 63 -   2180720 CTTGACTCATCTTCATTATGTACTTAGCACAA--CAAAATTTAATGG-GTGGGTA-ACAAATCCACA---------------
i dasNov3.JH569975          C 0 C 0
e chlSab2.chr29              21056827 132 -  24206276 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=2653760.000000
s hg38.chr15_KI270850v1_alt    179913 249 +    430880 GGCTTCCTTTTAAGCATGAGGATTTTTGGTGTATCCTAATTTACGGTTCAACCTTCCT-GTTTCCACTTGCTTCATTGTTCACTTTGGGAAGGCT--------------T----ATTCTTTGCTTCG-TTAACCCATTC----TAATCCTGTGTCTTCTTACTTTGTCCTTTGTAA---ACCTGCTTCTTTCTCTTCATCTCTTTTCTTGGTCAGAGACACCCAGAAAATTGTTCCTGACCAAGTG--AAGTGAG-------TTGCCTTATTAGATC----------CCATTTGA
s panTro5.chr15              17989553 247 -  83230942 GGCTTCCTTTTAAGCATGAGGATTTTTGGTGGATCCTAATTTACGGTTCAACCTTCCT-GTTTCCACTTGCTTCATTGTTCACTTTGGGAAGGCT--------------T----ATTCTTTGCTTTG-TTAACCCATTC----TAATCCTGTGTCTTCTTTCTTTGTCCTTTGTAA---ACCTGCTTCTTTCTCTTCATCTCTTTTCTTGGTCAGAGACACCCAGAAAATTGTTCCTGACCAAGTG--AAGTGAG-------T--CCTTATTAGATC----------CCATATGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17215876 247 -  99763055 GGCTTCCTTTTAAGCATGAGGATTTTTGGTGGATCCTAATTTACGGTTCAACCTTCCT-GTTTCCACTTGCTTCATTGTTCACTTTGGGAAGGCT--------------T----ATTCTTTGCTTTG-TTAACCCATTC----TAATCCTGTGTCTTCTTTCTTTGTCCTTTGTAA---ACCTGCTTCTTTCTCTTCATCTCTTTTCTTGGTCAGAGACACCCAGAAAATTGTTCCTGACCAAGTG--AAGTGAG-------T--CCTTATTAGATC----------CCATATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       278513 249 +    378907 GGCTTCCTTTTAGGCATGAGGATTTTTGGTGGATCCTAATTTACAGTTCAACCTTCCT-GTTTCCACTTGCTTCATTGTTCACTTTGGGAAGGCT--------------T----ATTCTTTGCTTTG-TTAACCCATTC----TAATCCTGTGTCTTCTTATTTTGTCCTTTGTAA---ACCTGCTTCTTTCTCTTCATCTCTTTTCTTGGTCAGAGACACCCAGAAAATTGTTCCTGACCAAGTG--AAGTGAG-------TTGCCTTATTAGATC----------CCATATGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133259 249 + 121039945 AGCTTCATTTTAAGCATGAGGATTTTTGGTGGATCCTAATTTATGGTTCAACCTTCCT-GTTTCCACTTGCTTCATTGTTCACTTTGGGAAGGCT--------------T----ATTCTTTGCTTCG-TTAACCCATTC----TAATCCTGTATCTTCTTTCTTTGTCCTTTGTAA---ACCTGCTTCTTTCTCTTCATCTCTTTTCTTGGTCAGAGACACCCAGAAAATTGTTCCTGACCAAGTG--AAGTGAG-------TTGCTTTATTAGATC----------CCATATGA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107340039 249 - 171882078 GGCTTCCTTTTAAGCATGAGGATTTTTGGTGGATCCTAATTTATGGTTCAACCTTCCT-GTTTCCACCTTCTTCATTGATCACTTTGGGAAGGCT--------------T----ATTCTTTGCTTCG-TTAACCCATTC----TAATCCTGTGTCTTCTTTCTTTGTCCTTTGTAA---ACCTGCTTCTTTCTCTTCATCTCTTTTCTTGGTCAGAGACACCCAGAAAATTGTTCCCGACCAAGTG--AAGTGAG-------TTGCCTTATTGGATC----------CCATTTGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21056959 249 -  24206276 GGCTTCCTTTTACGCATGAGGATTTTTGGTGGATCCTAATTTATGGTTCAACCTTCCT-GTTTCCACCTTCTTCATTGATCACTTTGGGAAGGCT--------------T----ATTCTTTGCTTCG-TTAACCCATTC----TAATCCTGTGTCTTCTTTCTTTGTCCTTTGTAA---ACCTGCTTCTTTCTCTTCATCTCTTTTCTTGGTCAGAGACACCCAGAAAATTGTTCCTGACCAAGTG--AAGTGAG-------TTGCCTTATTGGATC----------CCATTTGA
i chlSab2.chr29             I 132 C 0
s manLeu1.NW_012105520v1       290165 249 -   1458659 GGCTTCCTTTTAAGCATGAGGATTTTTGGTGGATCCTAATTTATGGTTCAACCTTCCT-GTTTCCACCTTCTTCATTGATCACTTTGGGAAGGCT--------------T----ATTCTTTGCTTCG-TTAACCCATTC----TAATCCTGTGTCTTCTTTCTTTGTCCTTTGTAA---ACCTGCTTCTTTCTCTTCATCTCTTTTCTTGGTCAGAGACACCCAGAAAATTGTTCCCGACTAAGTG--AAGTGAG-------TTGCCTTATTGGATC----------CCATTTGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       721847 249 -    764599 GGCTTCCTTTTAAGCATGAGAATTTTTGGTGGATCCTAATTTATGGTTCAACCTTCCT-GTTTCCACCTTCTTCATTGATCACCTTTGGAAGGCT--------------T----ATTCTTTGCTTTG-TTAACCCATTC----TAATCCCGTGTCTTCTTTCTTTGTCCTTTGTAA---ACCTGCTTCTTTCTCTTCATCTCTTTTCTTGGTCAGAGACACCCATAAAATTGTTCCCGACCAAGTG--AAGCGAG-------TTGCCTTATTAGATC----------CCATTTGA
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 214670 248 -   2853901 GGCTTCCTTTTAAGCATAAAGATTTTTGTTGGATCCTAATTTACTGTTCAACCTTCCTCATTTCCACTTGTTCTGTTGTCCACTTTGGGAAGGCT--------------T----ATTCTTTGCTTTG-TTAACCCATTC----TAATCCTGTGTCTTCTTTCTTTGTCCTTTGTAA---ACTTACTTCTTTCCCTTCATCTCTTTCCTTGGTCAGAGCCACCTAGGAAAC--TTCCTGACCAAGTG--ATGTAAG-------GTGCCTTATAAGATC----------CTATTTGA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             496129 248 -   3282555 GGCTTCCTTTTAAGCATAAAGATTTTTGTTGGATCCTAATTTACTGTTCAACCTTCCTCATTTCCACTTGTTCTGTTGTCCACTTTGGGAAGGCT--------------T----ATTCTTTGCTTTG-TTAACCCATTC----TAATCCTGTGTCTTCTTTCTTAGTCCTTTGTAA---ACTTACTTCTTTTCCTTCATCTCTTTCCTTGGTCAGAGCCACCTAGGAAAC--TTCCTGACCAAGTG--ATGTAAG-------GTGCCTTATTAGATC----------CTATTTAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       280747 272 -   1024465 GGCTTCCTTTTAAGCATAAAGATTTTTGTTGGATCATAATTTACTGTTCAACCTTCCTCATTTCCACTTGTTCTGTTGTCCACTTTGGGAAGGCTTTGCTTTGTTAACCT----ATTCTTTGCTTTG-TTAACCCATTC----TAATCCTGTGTCTTCTTTCTTTGTCCTTTGTAATACACTTACTTCTTTCCCTTCATGTCTTTCCTTGGTCAGAGCCACCTAGGAAAC--TTCCTGACCAAGTG--ATGTTATTATTACCAAGCCTTATTAGCTC----------CTATTTGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727576 248 -   3745603 GGCTTCCTTTTAAGCATAAAGATTTTTGTTGGATCCTAATTTACTGCTCAACCTTCCTCATTTCCACTTGTTCTGTTGTCCATTTTGGGAAGGCT--------------T----ATTCTTTGCTTTG-TTAACCCATTC----TAATCCTGTGTCTTCTTTCTTTGTCCTTTGTAA---ACTTACTTCTTTCCCTTCATCTCTTTCCTTGGTCAGAGCCACCTAGGAAAC--TTCCTGACCAAGTG--ATGTAAG-------GTGCCTTATTAGATC----------CTATTTGA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 913517 245 - 119751181 GGCTTCCTTTTAAGCATGAGGATTTTTGTTTGATACTAATTTACTGTTGAGCCTTCCTCATTTCTAATTGCTCCTTTGTCTACTTTGGAAAGCCT--------------T-----TGCTTTGCTTTG-TTAACC---TC----CAATCCTGTCTCTTCTTTCTTAGTCCTTCATAA---ACCTAGTTCCTTCTCTTCATCTGTTTTA-TGGTCAGAGACACACAGGAAACCATTCCTGACCAAGTG--AAGTAAG-------TTGCCTTATTAGATC----------CCATTTGA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       637140 240 -   2566024 TGCTTCCTTTTAAGTGCGAGGATTTTTGTTTGATACTAATTTACTGTTCAGCCTTCCTCATTTCCACTTGTTCCTTAGTCCACTTTGGAAAGC------------------------CTTTGCTTTG-TTAACC---TC----TAATCCTGTGTCTTCTTTCTTAGTCCTTCATAA---ACCTAGTTCCTTCTCTTCATCTGTTTTA-TGGTCAGAGACACCTAGGAAACCGTTCCTGACCAAGTG--AAGTAAG-------TTGCCTTATTAGATC----------CCATTTGA
i proCoq1.NW_012149419v1    C 0 I 44
s otoGar3.GL873530            6753796 243 -  36342412 TGCTTCCTTTTAAATATAAGGATTTTTATTTGATGCTAATTTACTGTTCAGCCTTTCTCATTTCCACTTGTTCCTTGGTCTACGTTGGAGAGGTG--------------T-----TTTTTTGCTCTG-TTAACCCATTC----CAATCCTGTG---TCTCTCTTACTCTTTCATAA---ACCTGCTTCTTTCTCTTC-TCTTTTCT--TGGTCAGAGACACCTAGGAAACCATTTCTGACCAAGTG--AAGTAAG-------TTGCCTTGTTATATC----------CCATTTGA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55167223 233 + 124595110 TGTTTCCCTTTGAGCACGAGGGCATTTGTTTGAT-CTAATTTAGTGCTTAGCCTTCCTCATGTCTAC-----------------TTGGAAGGGCT--------------TGCTTGTTCTTTGCTGGACTTAACCCATTC----TAATCCTGTTCCTGTTTTCTTAGTCCTCCATAA---ACCTGCTTCTT---CTTCATGTCTTTTCTTCATCAGAGACACTGAGCTAACTATTCCTG-CCCAGTG--AAGTAAG-------TTGCCTTATCAGCTC----------CCATCTGA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 38522 245 -  40214260 -----CCTTTTAAATTTAAATTTAAGTTTTTTATCCTAATTTATTACTCAACTTTCCTAATATCTGCTTGTTCCTTTGATAACTTTGGAAAATCT--------------T----A--CTCTGCT--G-GTAACCCATTC----TAATCCTGTCTCTGCTTTCTTAGTCCTTCATAA---ACCTGC------CTTTTCATCTCTTTTCCTGGTCAGAGACATCCAGGAAACGGTTCCTAACCAGGTG--AAGTAAG-------TTACCTTATTAGCTCTGGGAAAAGTCTACTCAG
i canFam3.chr30             C 0 I 16
s dasNov3.JH569975              24664 234 -   2180720 ----------------TGGGGATTTTTGCTTGATCCTAATTTACCTTTCAACCTTTTT-------ACTTGCTGTTTTGTCCACTTTGGAAAGGCT--------------T----GCTCTTTGCTTTGCTTAACGCCTTCTAATTAATCTTGTGTCTGTTGTCTTAGTTCTTCATAA---ACCTGCTTCTTTCTCTTCATCTCTTTTCTTGGTCAGAGACACCTAAGAAACTGTTCTTGACCAAGTGAAAAGTAAG-------TTGCCTTACTAGCCC----------CCGTCCAA
i dasNov3.JH569975          C 0 C 0
e cerAty1.NW_012002657v1      1802519   8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797   8 + 169600520 I

a score=34312.000000
s hg38.chr15_KI270850v1_alt    180162 3 +    430880 GTC
s panTro5.chr15              17989800 3 -  83230942 GTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17216123 3 -  99763055 GTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       278762 3 +    378907 GTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133508 3 + 121039945 CTC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107340288 3 - 171882078 GTC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21057208 3 -  24206276 GTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       290414 3 -   1458659 GTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       722096 3 -    764599 GTC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 214918 3 -   2853901 GTC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             496377 3 -   3282555 GTC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       281019 3 -   1024465 GTC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727824 3 -   3745603 GTC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 913762 3 - 119751181 GTC
i micMur3.chr3              C 0 I 152
s otoGar3.GL873530            6754039 3 -  36342412 GTC
i otoGar3.GL873530          C 0 I 40
s mm10.chr9                  55167456 3 + 124595110 GTC
i mm10.chr9                 C 0 I 13
s canFam3.chr30                 38783 3 -  40214260 ACC
i canFam3.chr30             I 16 C 0
s dasNov3.JH569975              24898 3 -   2180720 GTC
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       637380 44 -   2566024 I
e cerAty1.NW_012002657v1      1802519 8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797 8 + 169600520 I

a score=6081.000000
s hg38.chr15_KI270850v1_alt    180165 2 +    430880 -AC
s panTro5.chr15              17989803 2 -  83230942 -AC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17216126 2 -  99763055 -AC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       278765 2 +    378907 -AC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133511 2 + 121039945 -AC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107340291 2 - 171882078 -AC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21057211 2 -  24206276 -AC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       290417 2 -   1458659 -AC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       722099 2 -    764599 -AC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 214921 2 -   2853901 -AC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             496380 2 -   3282555 -AC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       281022 2 -   1024465 -AC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727827 2 -   3745603 -AC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6754082 1 -  36342412 -A-
i otoGar3.GL873530          I 40 C 0
s mm10.chr9                  55167472 2 + 124595110 -AT
i mm10.chr9                 I 13 C 0
s canFam3.chr30                 38786 2 -  40214260 -AT
i canFam3.chr30             C 0 I 10
s dasNov3.JH569975              24901 2 -   2180720 TA-
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 913765 152 - 119751181 I
e proCoq1.NW_012149419v1       637380 44 -   2566024 I
e cerAty1.NW_012002657v1      1802519 8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797 8 + 169600520 I

a score=924887.000000
s hg38.chr15_KI270850v1_alt    180167 106 +    430880 ----------------------------------------CTTATACATTAA-AAAACA----TTTTAAACAATGAAAACCACATTTGTGCACATAGTTTACCTTGTTTATTTCC-TTAAA--------CATGCTTACAACACAATTTGGACGTAAACAG
s panTro5.chr15              17989805 111 -  83230942 ----------------------------------------CTTATACATTAA-AAAACA----TTTTAAACAATGAAAACCACACTTGTGCACATAGTTTACCTTGCTTATTTCC-TTAAA---GTAAACAATCTTACAATACAATTTGGACTTAAACAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17216128 111 -  99763055 ----------------------------------------CTTATACATTAA-AAAACA----TTTTAAACAATGAAAACCACACTTGTGCACATAGTTTACCTTGCTTATTTCC-TTAAA---GTAAACAATCTTACAATACAATTTGGACTTAAACAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       278767 106 +    378907 ----------------------------------------CTTATACATTAA-AAAACA----TTTTAAACAATGAAAACCACACTTGTGCACATAGTTTACCTTGCTTATTTCC-TTAAA--------CACGCTTACAACACAATTTGGACTTAAACGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133513 111 + 121039945 ----------------------------------------CTTATACATTAA-AAAACA----TTTTAAACAATGAAAACCACACTTGTGCACATAGTTTACCTTGCTTATTTCC-GTAAA---GTAAACATGCTTACAATACAATTTGGACTTAAGCAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107340293 111 - 171882078 ----------------------------------------CTTATACATTGA-AAAACA----TTTTAAACAATGAAAACCACACTTGTGCACATAGTTTACCTTGCTTACTTCC-TTAAA---GTAAATGTGCTTACAACACAATTAGGACTTAAACAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21057213 111 -  24206276 ----------------------------------------CTTATACATTGG-AAAACA----TTTTAAACAATGAAAACCACACTTGTGCACATAGTTTACCTTGCTTACTTCC-TTAAA---GTAAATGTGCTTACAACACAATTTGGACTTAAACAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       290419 111 -   1458659 ----------------------------------------CTTATACATTGA-AAAACA----TTTTAAACAATGAAAACCACACTTGTGCACATAGTTTACCTTGCTTACTTCC-TTAAA---GTAAATGTGCTTACAACACAATTTGGACTTGAACAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       722101 111 -    764599 ----------------------------------------CTTATACATTGG-AAAACA----TTTTAAACAATGAAAACCACACTTATGCACATAGTTTATCTTGCTTACTTCC-TTAAA---GTAAATGTGCTTACAACACAATTTGGACTTAAACAT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 214923 111 -   2853901 ----------------------------------------ATTATATGTTGA-AAAACA----TTTTAAACAATGAAAACCATACTTGGGCACATAATTTGTCTTGCTTACTGGC-TTAAA---GCAAATATATTTACAAAACAATCTGGACTTAAACAC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             496382 111 -   3282555 ----------------------------------------TTTATATGTTGA-GAAACA----TTTTAAACAATGAAAACCATGCTTGGGCACATAATTTGTCTTGCTTACTTGC-TTAAA---GCAAATATGCTTACAAAACAAACTGGACTTAAACAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       281024 106 -   1024465 ----------------------------------------TTTATATGTTGA-AAAACA----TTTGAAACAATGAAAACCATATTTGGGCACATAATTTGTCTTGCTTACTTGC-TTAAA---GC-----TACTTACAAAACAAACTGGACTTAAACAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727829 111 -   3745603 ----------------------------------------TTCATATGTTGA-AAAACA----TTTTAAACAATGAAAACCATACTTGGGAACATAATTTGTCTTGTTTACTTGC-TTAAA---GCAAATATGCTTACAAAACAATCTGGACTTAAACGT
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       637424 111 -   2566024 ----------------------------------------CTTATACATTGA-AAAAAA----TTTTAGACAATGGAAAACATGTTTGTGCACATAATTTACCTTGCTTACTTGC-TTAAA---GTAAATGTGCTTACAAAATAATCTGGGTTTAAAAAT
i proCoq1.NW_012149419v1    I 44 C 0
s otoGar3.GL873530            6754083 111 -  36342412 ----------------------------------------CTTACACAATGA-AAAAAA----AATTAAACAGTGAAAAACATGTTTATGCAGGTAATTTACCTTGCTTACTTGCTTTAAA---GTAAATGTGTTTACAAAATAATCTGGGTTTAAAAT-
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55167474  99 + 124595110 ----------------------------------------CTTTTATGTTGAGGAAAAA----CCCTACATAATGAAAAGTATGTTTG----CACAGTTTTCCTTGTTTGCTTCC-TTAAA---GTAAATATACCTACAAAA--------ATTTAAAAT-
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 38798 118 -  40214260 ----------------------------------------CGTATACATTGA-AAACAATTTTTTTTCAATAATGAAAAACATGTTTGTGAACGTAATTTACCTCGCTGCTTTGC-TTTGATGAGTAGATATGCTTACAAAACAATCTGGGTGTAAAGAT
i canFam3.chr30             I 10 C 0
s dasNov3.JH569975              24903 137 -   2180720 CTAAGTATTGACCATTTTTTGTTAAATTATATTCGCTAAGTTAGTACATTGAAAAAAAA----ATTTTAACAGTGGAAAACATGTTT-------TAATTTACCTTACT--------TTAAG---TAAAATATGCTTATAAAA-ATTCTGGATTTAAAAAA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 913765 152 - 119751181 I
e cerAty1.NW_012002657v1      1802519   8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797   8 + 169600520 I

a score=299289.000000
s hg38.chr15_KI270850v1_alt    180273 26 +    430880 GGAAATTT--AC--AGTTATTCT----TTGCAGT
s panTro5.chr15              17989916 26 -  83230942 GGAGACTT--AC--AGTTATTTT----TTGCAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17216239 26 -  99763055 GGAGACTT--AC--AGTTATTTT----TTGCAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       278873 26 +    378907 GGAAATTT--AC--AGTTATTCT----TTGCAGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133624 26 + 121039945 GGAAATTT--GC--AGTTATTCT----TTGTAGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107340404 26 - 171882078 GGAAATTT--AC--AGTTATTCT----TTGCAGT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21057324 26 -  24206276 GGAAATTG--AC--AGTTATTCT----TTGCAGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       290530 26 -   1458659 GGAAATTT--AC--AGTTATTTA----TTGCAGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       722212 26 -    764599 GGAAATTT--AC--AGTTATTCT----TTGTAGT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 215034 26 -   2853901 GGAAATTT--AC--CATTATTCT----TTGCAGT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             496493 26 -   3282555 GGAAATTT--AC--AGTTTTTCT----TTGCAGT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       281130 26 -   1024465 GGAAATTT--AC--AGTTATTCT----TTGCAGT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727940 26 -   3745603 GGAAATTT--AC--AGTTATTCT----TTGCAGT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 913917 26 - 119751181 GGAAATTT--AC--AGTTATTCT----TTGCAGT
i micMur3.chr3              I 152 I 46
s proCoq1.NW_012149419v1       637535 26 -   2566024 GGAAATGT--AC--AGTTATTCT----TTGCAGT
i proCoq1.NW_012149419v1    C 0 I 1
s otoGar3.GL873530            6754194 26 -  36342412 GGAAATTT--AT--AGTTATTCT----TTGTAGT
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55167573 32 + 124595110 GGAAATTTAAAC--AGCTATTCTAATATGGCAGT
i mm10.chr9                 C 0 I 1
s canFam3.chr30                 38916 27 -  40214260 GGGAACTT--AATGAGTTACCC-----TTATGGT
i canFam3.chr30             C 0 I 1
s dasNov3.JH569975              25040 28 -   2180720 GGAAATTT--AAGGAGTTATTTT----TTGCAGT
i dasNov3.JH569975          C 0 C 0
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=172038.000000
s hg38.chr15_KI270850v1_alt    180299 27 +    430880 -TTCCTAGTGAATGAT---------------TATTTTTTAGAC
s panTro5.chr15              17989942 27 -  83230942 -TTCCTAGTGAATGAT---------------TATTTTTTAGAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17216265 27 -  99763055 -TTCCTAGTGAATGAT---------------TATTTTTTAGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       278899 27 +    378907 -TTCCTAGTGAATTCG---------------TATTTTTTAGAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133650 27 + 121039945 -TTCCTAGTGAATTAT---------------TATTTTTTAGAC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107340430 27 - 171882078 -TTCCTAGTGAATTAT---------------TATTTTTTAGAC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21057350 27 -  24206276 -TTCCTAGTGAATTAT---------------TATTTTTTACAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       290556 27 -   1458659 -TTCCTAGTGAATTAT---------------TAGTTTTTAGAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       722238 27 -    764599 -TTCCTAGTGAATTAT---------------TATTTTTTAGAC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 215060 29 -   2853901 -CTCCTAGTGAATTATT-------------TTTTTTTTTAGAC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             496519 29 -   3282555 -CTCCTAGTGAATTATT-------------ATTTTTTTTAGAC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       281156 29 -   1024465 -CTCCTAGTGAATTATT-------------ATTTTTTTTAGAC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727966 26 -   3745603 -CTCCTAGTGAATTA----------------TTTTTTTTAGGC
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       637562 28 -   2566024 -GTCCTAGTGAATTATT--------------TATTTTTTTAAG
i proCoq1.NW_012149419v1    I 1 I 15
s otoGar3.GL873530            6754221 28 -  36342412 -GTCCTAGTAAAATATT--------------TATTTTTTAAAG
i otoGar3.GL873530          I 1 I 16
s mm10.chr9                  55167606 28 + 124595110 -TTGCTAATTTTTTTTT-------------CTTTTCTTTTGG-
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 38944 42 -  40214260 -TTCCTAGTGCATCtttttcctttttttttttttttttttGAC
i canFam3.chr30             I 1 C 0
s dasNov3.JH569975              25068 39 -   2180720 TTTCCTATTGAAAATTTTTTTCTTTTC----TTTTTTTTGGAC
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 913943 46 - 119751181 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=2410137.000000
s hg38.chr15_KI270850v1_alt    180326 243 +    430880 AGACACttaagagcctactaagtatcaagtg-tttcac----aggtttcatttaatctttactattctgggaaagttttcatttctttgttttacagatgagtagactcaaactcaaggaattaga--------tatgatatccaaggtcatct--agA-----TTTCCAGGCTCTGTCTGCTGGATCACATTTGCTTTTGTACTTTTA----ACTATGAC--TG--GAATA-TATAATTTTATAATCCATGTGTAACAACACTGCCTGTGT
s panTro5.chr15              17989969 243 -  83230942 AGATACttaagagcctactaagtatcaagtg-ttttac----aggtttcatttaatctttactattccgggaaagttttcatttccttgttttacagatgagtagactcaaactcaaggaattaga--------tatgatatccaaggtcatct--agA-----TTTCCAGGCTCTGTCTGCTGGATCACATTTCCTTTTGTACTTTTA----ACTATGAC--TG--GAATA-TATAATTTTATAATCCATGTGTAACAATACTGCCTGTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17216292 243 -  99763055 AGACACttaagagcctactaagtatcaagtg-ttttac----aggtttcatttaatctttactattccgggaaagttttcatttccttgttttacagatgagtagactcaaactcaaggaattaga--------tatgatatccaaggtcatct--agA-----TTTCCAGGCTCTGTCTGCTGGATCACATTTCCTTTTGTACTTTTA----ACTATGAC--TG--GAATA-TATAATTTTATAATCCATGTGTAACAATACTGCCTGTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       278926 243 +    378907 AGACGCttaagagcctactaagtatcaagtg-ttttac----aggtttcatttaatctttactattctgggaaagttttcatttctttgttttacagatgagtagactcaaactcaaggaattaga--------tatgatatccaaggtcatct--agA-----TTTCCAGGCTCTGTCTGCTGGATCACATTTGCTTTTGTACTTTTA----ACTATGAC--TG--GAATA-CATAATTTTATAATCCATGTGTAACAACACTGCCTGTGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133677 243 + 121039945 AGACACttaagcgcctactaagtatcgagtg-ttttac----aggtttcatttaatctttactattccgggaaagttttcatttctttgttttacagatgagtagactcaaactcaaggaattaga--------tatgatatacaaggtcGTCT--AGA-----TTTCCAGGCTCTGTCTGCTGGATCACATGTGCTTTTGTACTTTTA----ACTATGAC--TG--GAATG-TATAATTTTATAATCCGTGTGTAACAGCACTGCCTGTGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107340457 246 - 171882078 AGACACTTAAGAACCTACTAAgtatcaagtg-ttttgc----aggttt-atttgatctttaccattctgggaaagttttcatttctttgttttacagatgagtagactcaaactcagggaattaga--------tgtgatatccaaggtcatct--agA-----TTTCCGGGCTCTGTCTGCTGGATCACATTTGCTTTTGTACTTTTAACTGACTGTGAT--TG--GAATA-TACAATTTTATAAGCCATGTGTAACAACACTGCCTGTAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21057377 246 -  24206276 AGACACTTAAGAGCCTACTAAgtatcaagtg-ttttgc----aggttt-atttgatctttaccattctgggaaagttttcatttctttgttttacagatgagtaaactcaaactcagggaattaga--------tgtgatatccaaggtcatct--agA-----TTTCCAGGCTCTGTCTGCTGGATCACATTTGCTTTTGTAGTTTTAACTGACTGTGAT--TG--GAATA-TATAATTGTATAAGCCATGTGTAACAACACTGCCTGTGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       290583 246 -   1458659 AGACACTTAAGAGCCTACTAAgtatcaagtg-ttttgc----aggttt-atttgatctttaccattctgggaaagttttcatttctttgttttacagatgagtagactcaaactcagggaattaga--------tgtgatatccaagctcGTCT--AGA-----TTTCCAGGCTCTGTCTGCTGGATCACATTTGCTTTTGTACTTTTAACTGACTGTGAT--TG--GAATA-TATAATTTTATAAGCCATGTGTAACAACACTGTCTGTAt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       722265 245 -    764599 AGACACttaagagcctactaagtatcaagtg-ttttgc----aggttt-atttaatctttaccattctgggaaagttttcatttctttcttttacaaatgagtagactcaaa-tcagggaaataga--------tatgatatccaaggtcatct--agA-----TTTCCAGGCTCTGTCTGCTGGATCACATTTGCTCTTGTAGTTTTAACTGACTGTGAT--TG--GAATA-TATAATTTTATAAGCCATGTGTAACAACACTGCCTGTGT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 215089 249 -   2853901 AGACACTTAAGAGCCTCCTAAGTATCAAGTGATTCCAC----AGGtttcatttaatctttgccattgtgggaaggttttcctttcttcgttttacacatgggtggactcaaactcagggaattaga--------tactatatccaaggtcaTCTAGAGA-----GTCCCAGGCTCTGTCTGCTAGATCACATTTGCTTCTGTACTTTTAAGTGAATATGAC--TG--GAATA-TACCATTTCATAATCCATGT-TAACAAGACTGCCTGTGT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             496548 249 -   3282555 AGACACTTAAGAGCCTCCTAAGTATCAAATGGTTCCAC----AGGtttcatttaatctttaccattgtgggaaagttttcatttcttcgttttacacgtgggtggactcaaactcagggaattagg--------tactatatccaaggtcaTCTAGAGA-----GTCCCAGGCTCTGTCTGCTACATCACATTTGCTTCTGTACTTTAAAGTGAATATGAC--TG--GAATA-TATAATTTCATAATCCGTGT-TAACAAGACTGCCTGTGT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       281185 249 -   1024465 AGACACTTAAGAGCCTCCTAAGtatcaagtggttccac----aggtttcatttaatctttaccattgtgggaaaattttcatttcttcgttttacacatgggtagactcaaactcagggaattagg--------tactgtatccaaggtcatctagAGA-----GTCCCAGGCTCTGTCTGCTAGATCACATTTGCTTCTGTACTTTTAAGTGAATATGAC--TG--GAATA-TATAATTTCATAATCCATGT-TAACAAGACTGCCTGTGT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       727992 249 -   3745603 AGACACTTAAGAGCCTCCTAAGtatcaagtggttccac----aggtttcatttaatctttaccattgtgggaaagttttcatttcttcgttttacacatgggtggactcaaactcaggggattaga--------tactatatccaaggtcatctagAGA-----GTCCCAGGCTCTGTCTGCTAGATCACATTTGCTTCTGTACTTTTAAGTGAATATGAC--TG--GAATA-TATAATTTCATAATCCATGT-TAACAAGACTGCCTGTGT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 913989 248 - 119751181 AGACTCTTAAGAGCCTACTAATCGTCAAATGTTTTCAC----AGGtttcatttaatctttaccattctggaaaagttttag----ttcattttacagatgggcagactccaacttagggagttaga--------taccgtatccaaggttaTCT--AGATTTCCTTCCCAGGCTCTGTCTACTAGATCACATTTGACTCTGTACTTTTAAATG-ATGTGAC--TG--GAATA-TGTAATTCTGTAATCCATGTGTAACAATACTGCCTATGT
i micMur3.chr3              I 46 I 14
s proCoq1.NW_012149419v1       637605 252 -   2566024 AGATTCTTAAGAGCCTACTAATCGTCAAATGTTTTCAC----AGGttttatttaatctttaccattctggaaaagttttaatttctttgttttacagatgggcagactcaaactcagggagttaga--------caccgtatcaagggtcatct--agATTCCCTTCCCAGGCTCTGCCTGCTAGATCACATTTGCCTCTGTATTTCTAAATG-ACGTGAC--TG--GGACG-TGTGATTCTGTGATCCATGTGCAACAACACTGCCTGTGT
i proCoq1.NW_012149419v1    I 15 I 51
s otoGar3.GL873530            6754265 241 -  36342412 AGA-TCTTAAGAGCCTGCTAATCATCaagtgttttcat----aagtttcatttaatc--taccatcctggaaaagttttaaatt-ttagttttacaggtaggcagactcaaactcagggagttaga--------tatcatatccaagatcaTCT--AAA-----TTCCTAGCCTCCGTCTACTAGATCATAGTTGTGCCTATACTTTTAAATGCATATGACTGTG--GAATATTATAATTCTATAATCCATGTGTAACACTATTTC------
i otoGar3.GL873530          I 16 C 0
s mm10.chr9                  55167634 196 + 124595110 AGAGGCTTAA-----------------------------------TTTTAATTACTCCTTACTGTCATGAGACAGCCTTCATTTCT--GTTTTGCAGATG-GCAGAGACTAAAGCCAGGGTTTAGG--------T---ATATGCAAGGTTATTT----------ATTCTAGGCTGAGTCTACTAGGCCACAATTGCCT-TATGGTTTTAAATGAATCTGAT--TGTTGCAAA-TGTAATTTTATAATCCATATGCAACA-------------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 38986 250 -  40214260 AAACGTTTAAGAAC---CTAAGGgccaagtgtttccac-agaagattttatttcatctttaccattataaggagtttttaatttccttattttacagatgggaaccctcacactcagggaattagaatgatgccTGCTGTATCCAGGGTCCTTT--AGA-----TTCCAAGAGTCTGTCTACTAGGCCACATTTGCCTC--GACTTTTAAATGAATATGAC--TG--AAATG-TATAATTTTATAACCCATGTGTAACAACACTGCCT----
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              25107 243 -   2180720 AAACACGTAAAAGCCTACTAAgtgccatgtg-ttttattagaaagcttcatgtgatttttaccattctgaggagattttactttccttgtttcacaagtg---agactcagatttagggagttaga--------taccatagccaaagtcatct--agA-----TTCCAGGGCTTTGTCTAC-AGACCACACTCGCCTTTATG--TATACATAACTGTAACTATG--GAATA-TATAACTTTATAACACATCTGCTGCAGCACTGTCT----
i dasNov3.JH569975          C 0 C 0
e cerAty1.NW_012002657v1      1802519   8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797   8 + 169600520 I

a score=77439.000000
s hg38.chr15_KI270850v1_alt    180569 35 +    430880 GTGGttttttttctttttttt---ttttGGGTGGCCTC
s panTro5.chr15              17990212 35 -  83230942 GTGGTTTTTTTTCTTTTTTCT---TTTTGGGTCACCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17216535 34 -  99763055 GTGG-TTTTTTTCTTTTTTCT---TTTTGGGTCACCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       279169 33 +    378907 GTGG-TTTTTTTCTTTTTT-T---TTTGGGGTCACCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133920 37 + 121039945 GTGGTTTTTTTTCTTTCTTTTG-GGGGGGGGTCGCCTC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107340703 35 - 171882078 Gtttttttcttctttttttct---tttttGGTAGCCTC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21057623 35 -  24206276 Gtttttttcttctttttttct---tttttGGTAGCCTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       290829 34 -   1458659 -tttttttcttctttttttct---tttttGGTAGCCTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       722510 35 -    764599 Gtttttttcttctttttttct---tttttGGTAGCCTC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 215338 28 -   2853901 CTGGGTTTTTTCT-------T---TTTTCGGTAGCCCC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             496797 28 -   3282555 CTGGGTTTTTTCC-------T---TTTTTGGTAGCCTC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       281434 28 -   1024465 CTGGCTTTTTTCT-------T---TTTTTGGTAGCCTC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       728241 28 -   3745603 CTGTTTTTTTTCT-------T---TTTTTGGTAGCCTC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6754506  8 -  36342412 ------------------------------ATAGCCTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55167830 25 + 124595110 ----CTTTCTTTAG------T---TTTTTGGTAGTCTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 39236 18 -  40214260 -----------------CTAT---TTTTTTGTCACCTC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              25350 17 -   2180720 ---------------------CTATTTTTTGTAACCCC
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 914237 14 - 119751181 I
e proCoq1.NW_012149419v1       637857 51 -   2566024 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=319610.000000
s hg38.chr15_KI270850v1_alt    180604 32 +    430880 ATTAATGCAGTAATGTTCTCTTGTTT--GAAGTT
s panTro5.chr15              17990247 32 -  83230942 ATTAATGCAGTAATGTTCTCTTCTTT--GAAGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17216569 32 -  99763055 ATTAATGCAGTAATGTTCTCTTGTTT--GAAGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       279202 32 +    378907 ATTAATGCAGTAATGTTCTCTTGTTT--GAAGTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133957 32 + 121039945 ATTAATGCAGTAATGTTCTCTTGTTT--GAAGCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107340738 32 - 171882078 ATTAATGCATTAATGTTCTCTTGTTT--GAAGTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21057658 32 -  24206276 ATTAATGCATTAATGTTCTCTTGTTT--GAAGTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       290863 32 -   1458659 ATTAATGCATTAATGTTCTCTTGTTT--GAAGTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       722545 32 -    764599 ATTAATGCATTAATGTTCTCTTGTTT--GAAGTT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 215366 32 -   2853901 TTTAATGCCTTAATGTTCTCTTGTCT--GAAGCT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             496825 32 -   3282555 TTTAACGCCCTAATGTTCTCTTGTCT--GAAGCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       281462 32 -   1024465 TTTAACGCCTTAATGTTCTCTTGTCT--GGAGCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       728269 32 -   3745603 TTTAATGCCTTAATATTCTCTTGTCT--GAAGCT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 914251 32 - 119751181 ATTAATGCATTAATGTTCTCTTGTCT--GAAGTT
i micMur3.chr3              I 14 I 60
s otoGar3.GL873530            6754514 31 -  36342412 -TTAATGCATTAATGTTCTTTTGTCT--GGAGTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55167855 34 + 124595110 ACGAATGCATTAATGTTCTGTTGTTTAAAAAGCT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 39254 30 -  40214260 ATTAATGTA--AACGTATTCTTGTCT--GAAGTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              25367 32 -   2180720 AATAATGCTTTAATATACTCAGGTCT--GAAATA
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       637857 51 -   2566024 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=251730.000000
s hg38.chr15_KI270850v1_alt    180636 31 +    430880 GTAAGTTTCTAAGAAAACAAGG-TAGCAGTGC
s panTro5.chr15              17990279 31 -  83230942 GTAAGTTTCTAAGAAAATAAGG-TAGCAATGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17216601 31 -  99763055 GTAAGTTTCTAAGAAAATAAGG-TAGCAATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       279234 31 +    378907 GTAAGTTTCTAAGAAAACAAGG-TAGCGGTGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102133989 31 + 121039945 GTAAGTTTCTAAGGAAACAAGA-CAGCAATGA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107340770 31 - 171882078 GTAAGTTTCTAAGAAAACAAGG-TAGCAATGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21057690 31 -  24206276 GTAAGTTTCTAAGAAAACAAGG-TAGCAACGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       290895 31 -   1458659 GTAAGTTTGTAATGAAACAAAG-TAGCAATGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       722577 31 -    764599 GTAAGTTTCTAAGAAAACAAGG-TAGCAATGA
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 215398 30 -   2853901 GTAAGTTTCTCAGAAAAC-AGG-TTGCAATGA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             496857 31 -   3282555 GTAAGTTTCTCAGAAAACAAGG-TGGCAGTGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       281494 31 -   1024465 GTAAGTTTCTCAGAAAACAAGG-TGGCAATGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       728301 31 -   3745603 GTAAGTTTCTCAGAAAACAAGG-TGGCAATGA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6754545 28 -  36342412 ----GTTTCTAAGAAAAGAAGGTTAGCAACTA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55167889 28 + 124595110 GCAAGTTTCTAAG---ATTAGT-TAGCAACTA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 39284 31 -  40214260 GTAAGTTACTAAGAAAAGTAGC-TAGCAGCTA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              25399 31 -   2180720 GTAAGTTTGTAAGAAAAGAAGT-TAGCAAGTG
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 914283 60 - 119751181 I
e proCoq1.NW_012149419v1       637857 51 -   2566024 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=408981.000000
s hg38.chr15_KI270850v1_alt    180667 39 +    430880 GAAATTGGACAATGTCTGGAACTTCC-TTCCTCTGCCTTT
s panTro5.chr15              17990310 39 -  83230942 GAAATTGGACAATGTCTGGAACTTCC-TTCCTCTGCCTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17216632 39 -  99763055 GAAATTGGACAATGTCTGGAACTTCC-TTCCTCTGCCTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       279265 39 +    378907 GAAATTGGACAATGTCTGGAACTTCC-TTCCTCTGCCTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102134020 30 + 121039945 GAAATTAGACAATG---------TCC-TTCCTCTGCCTTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107340801 39 - 171882078 GAAATTGGACAATGTCTGGAACTTCC-TTCCTCTGCCTAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21057721 39 -  24206276 GAAATTGGACAATGTCTGGAACTTCC-TTCCTCTGCCTAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       290926 39 -   1458659 GAAATTGGACAATGTCTGGAACTTCC-TTCCTCTGCCTAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       722608 39 -    764599 GAAATTGGACAATGTCTGGAACTTCC-TTCCTCTGCCTTT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 215428 39 -   2853901 GAAATTGGACAATGTCTGGAACTTCC-TTCCTCTCCCTTG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             496888 39 -   3282555 GAAATTGGACAATGTCTGGAACTTCC-TTCCTCTCCCTTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       281525 39 -   1024465 GAAATTGGACAATGTCTGGAACTTCC-TTCCTCTCCCATT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       728332 39 -   3745603 GAAATTGGACAATGTCTGGAACTTCC-TTCCTCTCCCTTT
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       637908 39 -   2566024 GAAATTGGGCACTGTCTGGAACTCCC-TTCCTCTGCTTTT
i proCoq1.NW_012149419v1    I 51 I 105
s otoGar3.GL873530            6754573 40 -  36342412 GAAATTGGACAATGTCTGGAACTCCCTTTCCTCTGCTTTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55167917 38 + 124595110 GACACTAGGCAGTGTCTGACCCTTCC-TT-CTGTGCCTTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 39315 40 -  40214260 AAAACTTGACAGCGTCTAGAGCTCCCCTTCCTCAGTCTTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              25430 40 -   2180720 GAAATCAGACAGTGTCTGGAGCTCCCCTTCCTCTGACTTT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 914283 60 - 119751181 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=122918.000000
s hg38.chr15_KI270850v1_alt    180706 16 +    430880 ATTCTTG---TTGTT--CCAT
s panTro5.chr15              17990349 16 -  83230942 ATTGTTG---TCATT--CCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17216671 16 -  99763055 ATTGTTG---TCATT--CCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       279304 16 +    378907 ATTGTTG---TCGTT--CCAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102134050 16 + 121039945 ATTGTTG---TCATT--CTGC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107340840 16 - 171882078 ATTGTTG---TCATT--CCAC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21057760 16 -  24206276 ATTGTTG---TCATT--CCAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       290965 16 -   1458659 ATTGCTG---TCATT--CCAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       722647 16 -    764599 ATTGTTG---TCATT--CCAC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 215467 16 -   2853901 AGGGTTG---TCATT--CTGC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             496927 16 -   3282555 ATTGTTG---TCATT--CTGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       281564 16 -   1024465 ATTGTTG---TCATT--CTGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       728371 16 -   3745603 ATTGTTG---TCATT--CTGC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6754613 16 -  36342412 TTTGTTG---TCATT--CTGC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55167955 17 + 124595110 -TTGTTG---GTGTTACCTAC
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 39355 13 -  40214260 ---GTCG---TCATT--CTGC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              25470 18 -   2180720 -CTGTTGAAATTATT--CTGC
i dasNov3.JH569975          C 0 I 1
e micMur3.chr3                 914283 60 - 119751181 I
e proCoq1.NW_012149419v1       637947 105 -   2566024 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=683692.000000
s hg38.chr15_KI270850v1_alt    180722  92 +    430880 TAGG--TATCAGTTGTAGTGATTATAGCCCAAGCCATAGTAAC-----------------TTTCTTAAACTAGAGGCTCCTGAAAA--TATTTC-AAAGAGT---TTTTTTAAAAAT
s panTro5.chr15              17990365  92 -  83230942 TAGG--TATCAGTTGTAGTGATTATACCCCAAGCCATAGTAAC-----------------TTTCTTAAACTAGAGGCTCCTGAAAA--TATTTC-AAAGAGT---TTTTAAAAATAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17216687  92 -  99763055 TAGG--TATCAGTTGTAGTGATTATACCCCAAGCCATAGTAAC-----------------TTTCTTAAACTAGAGGCTCCTGAAAA--TATTTC-AAAGAGT---TTTTAAAAATAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       279320  92 +    378907 TAGG--TATCAGTTGTAGTGATTATAGCCCAAGCCATAGTAAC-----------------TTTCTTAAACTAGAGGCTCCTGAAAA--TATTTC-AAAGAGT---TTTTTTAAAAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102134066  92 + 121039945 TAGG--TATCAGTTGTAGTGATTATACCCCAAGCCATAGTAAC-----------------TTTCTTAAACTAGAGGCTCCTGAAAA--TATTTC-AAAGAGT---TTTTAAAAAAAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107340856  91 - 171882078 TAGT--TATCAGTTTTAGTGATTATACCCCAAGCCATAGTAAC-----------------ATTCTTAAAATAGAGACTCCTGAAAA--TATTTT-AAAGAG----TTTTTTTTTTAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21057776  92 -  24206276 TAGT--TATCAGTTTTAGTGATTATACCCCAAGCCATAGTAAC-----------------ATGCTTAAAATAGAGACTCCTGAAAA--TATTTT-AAAGAGT---TTTTTTTTTTAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       290981  91 -   1458659 TAGT--TATCAGTTTTAGTGATTATACCCCAAGCCATAGTAAC-----------------ATTCTTAAAATAGAGACTCCTGAAAA--TATTTT-AAAGAG----TTTTTTTTTTAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       722663  90 -    764599 TAGT--TATCAGTTGTATTGATTATACCCCAAGCCATAGTAAC-----------------ATTCTTAAAATAGAGACTCCTGAAAA--TATTTT-AAAGAG-----TTTTTTTTTAT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 215483  91 -   2853901 TAGG--TATCAGTTGTAGTGATTGTACCTCAAGCCACAGTAAC-----------------TTTCTTATACTAGAGGCTCCTGAAAA--TATTTT-AAAGAC----TACTTTTTAAAT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             496943  93 -   3282555 TAGGTTTATCAGTTGTAGTGATTGTACCCCAAGCCACAGTAAC-----------------TTTGTTATACTAGAGGCTCCTGAAAA--TATTTT-AAAGAC----CACTTTTTAAAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       281580  91 -   1024465 TAAG--TATCAGTTGTAGTGATTGTACCCCAAACCACAGTAAC-----------------TTTCTTATACTGGAGGCTCCTGAAAA--TATTTT-AAAGAC----TACTTTTTAAAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       728387  91 -   3745603 TAGG--TATCAGTTGTAGTGATTGTACACCAAGCCACAGTAAC-----------------TTTCTTATACTAGAGGCTCCTGAAAA--TATTTT-AAAGAC----TACTTTTTTAAT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 914343  90 - 119751181 TAGG--TATGAGTTGTAGGGATTTTACTCTAAGCCATAGCAAC-----------------TTTCTTATACTAGCAGCCCCTAAAAA--TATTTT-AAAGACTA-----TTATTTTAT
i micMur3.chr3              I 60 C 0
s otoGar3.GL873530            6754629  96 -  36342412 TAAG--TATCAGTTGTAGAGATGACACCCCATGCTGGTATAAC-----------------TTTCGTATACTAGGAGCCCCTAAAAA--TATTTTAAAAGACTGACTTTTTACTTTAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55167972 101 + 124595110 TAGA--TACCA--TGCTATAAGGACATACTAAGCTGTAATAACTTTTCTAAAATCGTGATTTTCTTACACCAGCAGCTCT--AACA--CGTATC-AGAGAC----TGCTTCCAT---
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 39368  91 -  40214260 TAGG--TGTTAGTTATAGGGATTGTAT-TCAAGCCATAGTCAC-----------------CTTCTTACACTAGCAGCCCCTAACAA--TATTTC-TTAAGGA---CGGTTATTTTAT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              25489  88 -   2180720 TAGG--CATTAGTTATAAGCATTACAC-CTAAGCCATAGTAAC-----------------TTTCTTACACTAGCAGCCCCTAAAAAGTTTTTTA-AAAGAC----TGTTTTAC----
i dasNov3.JH569975          I 1 C 0
e proCoq1.NW_012149419v1       637947 105 -   2566024 I
e cerAty1.NW_012002657v1      1802519   8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797   8 + 169600520 I

a score=41137.000000
s hg38.chr15_KI270850v1_alt    180814 3 +    430880 CTG
s panTro5.chr15              17990457 3 -  83230942 CTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17216779 3 -  99763055 CTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       279412 3 +    378907 CTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102134158 3 + 121039945 GTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107340947 3 - 171882078 CTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21057868 3 -  24206276 CTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       291072 3 -   1458659 CTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       722753 3 -    764599 TTG
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 215574 3 -   2853901 CTG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             497036 3 -   3282555 CTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       281671 3 -   1024465 CTG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       728478 3 -   3745603 CTG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 914433 3 - 119751181 CTG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       638052 3 -   2566024 CTG
i proCoq1.NW_012149419v1    I 105 C 0
s otoGar3.GL873530            6754725 3 -  36342412 CTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55168073 3 + 124595110 CTA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 39459 3 -  40214260 CTG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              25577 3 -   2180720 CTG
i dasNov3.JH569975          C 0 C 0
e cerAty1.NW_012002657v1      1802519 8 -   1987038 I
e macNem1.NW_012011056v1      5335222 6378 -   6271500 I
e rheMac8.chr7               60346797 8 + 169600520 I

a score=1833292.000000
s hg38.chr15_KI270850v1_alt    180817 134 +    430880 TAAGCTGCAGTTGAGCAGTTACAAAC-TTTTTTATTTCCTACTAGATTGATT-GCAGTAG-TCATAACATTATTG-CTGTCTTCTAAGGGCTCTTT-AACATA-ATGCTTA-TTTACTGAAAT-GTGTTTTGTAGCTTCATC
s panTro5.chr15              17990460 134 -  83230942 TAAGCTGCAGTTGAGCAGTAACAAAC-TTTTTTATTTCCTACTGGATTGATT-GCAGTAG-TCATACCATTATTG-ATGTCTTCTCAGTGCTCTTT-AACATA-ATGCTTA-TTTACTGAAAT-GTGTTTTGTAGCTTCATC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17216782 134 -  99763055 TAAGCTGCAGTTGAGCAGTAACAAAC-TTTTTTATTTCCTACTGGATTGATT-GCAGTAG-TCATACCATTATTG-ATGTCTTCTCAGTGCTCTTT-AACATA-ATGCTTA-TTTACTGAAAT-GTGTTTTGTAGCTTCATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       279415 134 +    378907 TAAGCTGCAGTTGAGCAGTTACAAAC-TTTTTTATTTCCTACTGGATTGATT-GCAGTAG-TCATAACATTATTG-ATGTCTTCTAAGGGCTCTTT-AACATA-ATGCTTA-TTTACTGAAAT-GGGTTTTGTAGCTTCATC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102134161 134 + 121039945 TAAGCTGCAGTTGAGCAGTAACAAAC-TTTTTTATTTCCTGCTGGATTTATT-GTAGTAG-TTGTACCATTATCG-ATGTCTTCTAAGGGCTCTTT-AACATA-ATGCTTA-TTTACTGAAAT-GTGTTTTGTAGCTTCATC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107340950 134 - 171882078 TAAGTTACAGTTGAGCAGTAACAAAC-TTTTTTATTTCCTTCTGGATTGATT-ACAGTAG-TCATAACATTATTG-ATGTCTTCTAAGGGCTCTTT-AACATA-ATGCTTA-TTTACTGAAAT-GTGTTTTACGGCTTCATC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5341600 139 -   6271500 TAAGCTGCAGTTGAGCAGTAACAAAC-TTTTTATTTCCGTCCGGGATTGATT-ACGGTAGAGTATAACATTATTA-ATGTCTTCTAAGGGCTCTTTCAACATAGATGCTTATTTTACTGAAATGGTGTTTTGTAGTTTCATC
i macNem1.NW_012011056v1    I 6378 I 620
s chlSab2.chr29              21057871 134 -  24206276 TAAGCTACAGTTGAGCAGTAACAAAC-TTTTTTATTTCCTTCTGGATTGATT-ACAGTAG-TCATAACATTATTG-ATGTCCTCTAAGGGCTCTTT-AACATA-ATGCTTA-TTTACTGAAAT-GTGTTTTACAGCTTCATC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       291075 134 -   1458659 TAAGCTACAGTTGAGCAGTAACAAAC-TTTTTTATTTCCTTCTGGATTGATT-ACAGTAG-TCATAACATTATTG-ATGTCCTCTAAGGGCTCTTT-AACATA-ATGCTTA-TTTACTGAAAT-GTGTTTTACGGCTTCATC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       722756 134 -    764599 TAAGCTACAGTTGAGCAGTAACAAAC-TTTTTTATTTCCTTCTGGATTGATT-ACAGTAG-TCATAACGTTATTG-ATGTCCTCTAAGGGCTCTTT-AACATA-ATGCTTA-TTTACTGAAAT-GTGTTTTATAGCTTCATC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 215577 132 -   2853901 TAAGCTGCAGTCGAGCAGTAACAAAC---TTTCATTTCCTACTGGATTGATT-GCAGTAG-TCATAACATTATTC-ATGTCTTCTAAGGGCCCTTT-AACATA-ATGCTTA-TTTACTGAAAT-GTGTTTTGTAGCTTCGTC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             497039 134 -   3282555 CAAGCTGCAGTTGAGCAGTAACAAAC-TTTTTCCTTTCCTACTTGATTGATT-ACAGTAG-TCATAACATTATTC-ATGTCTTCTAAGGGCCCTTT-AACATA-ATGCTTA-TTTACTGAAAT-GTGTTTTGTAGCTTCGTC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       281674 133 -   1024465 TAAGCTGCAGTTGAGCAG-AACAAAC-TTTTTCATTTCCTACTCGATTGATT-ACAGTAG-TCATAACATTATTC-ATGTCTTCCAAGGGCCCTTT-AACTTA-ATGCTTA-TTTACTGAAAT-GTGTTTTGTAGCTTCGTC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       728481 134 -   3745603 TAAGCTGCAGTTGAGCAGTAACAAAC-TTTTTCATTTCCTACTGGATTGATT-ACAGTAG-TCATAACATTATTC-ATGTCTTCTAAGGGCCCTTT-AACATA-ATGCTTA-TTTACTGAAAT-GTGTTTTGTAGCTTCGTC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 914436 134 - 119751181 TAGGCTACAGTTGAGCAGCAGCAAAC-TTTTTCATTTCCTGCTGGATTGATT-ACAGTCG-TCATAGCATTATTC-ATGTCTTCTAAGGGCTCTTT-AACATA-ATGCTTA-TTTACTGAAAT-GTGTTTTGTAGCTTCGTC
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       638055 132 -   2566024 TAGGCTGCAGTTGAGCAGTAGCAAAC--TTTTCATTTCCTCCTGCATTGATT-ACAGTCG-TCATAGCGTTATTC-ATGTCTTCT-GGGGCTCTTT-AACGTG-ATGCTTA-TTTACCGAAAT-GTGTTTTGTAGCTTCGTC
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6754728 134 -  36342412 TAGGTTGCAGTCGAGCAGTAGCAAAC-TTTTCCATTTCCTCCGTGATTGATT-GCAGTAG-TCCTAGCATTGTTC-ATGTCTTCTGAGGGCTCTTT-AACATG-ACGCTTA-TTTACTGACAT-GTGTTTTGTAGCTCCGTC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55168076 133 + 124595110 TGGGCTGCAGTT-AGCAGGAGCGCA---TTTTCCTTTCCTTCTGGATTGACTAACAGTAG-TTGTAGCATTATTCAATGTCGTCTAAGGGCTCTTT-AACATA-ATGCTTA-TTTACTGAAAT-ATGTTTTGTAGCTCCGTC
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 39462 136 -  40214260 TGGGCTGGAATTGAGTTGTGACAAACTTTTTTCATTTCCTACTGGATTGGTTTACGGTAG-TCATAGCATTATTC-ATGTCTTCTAAGGGCTCTTT-AACATA-ATGTTTA-TTTACCGAAAT-GTGTTTTGTAGCTTCGTC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              25580 134 -   2180720 -TAGCTGCAATGGAGCCATAACAAACTTTTTTCTTTTCCTACTGGATTGAAT-ACAGTAG-TTAAAGCATTATTC-ATGTCTTCTAAGGGCTCTTT-AACAAA-ATGCTTA-TTTACTGAAAT-GTGTTTTGTAGCTTCGTC
i dasNov3.JH569975          C 0 C 0
e cerAty1.NW_012002657v1      1802519   8 -   1987038 I
e rheMac8.chr7               60346797   8 + 169600520 I

a score=1649710.000000
s hg38.chr15_KI270850v1_alt    180951 116 +    430880 AGCAATTGAAGTGGTTGATATGTGGACTCTGCAGGTTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCCAGATCAACCACTACCCATGGGTCAGCTAAAGTAAAAATTC---TCT
s panTro5.chr15              17990594 116 -  83230942 AGCAATGGAAGTGGTTGATATGTGGACTCTGCAGATTATATAACCTTCCTAAGCACCCGAATGTTGAGATGCCAGATCAACCACTACCCATGGGTCAGGTAAAGTAAAAATTC---TGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17216916 116 -  99763055 AGCAATGGAAGTGGTTGATATGTGGACTCTGCAGATTATATAACTTTCCTAAGCACCCGAATGTTGAGATGCCAGATCAACCACTACCCATGGGTCAGGTAAAGTAAAAATTC---TGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       279549 116 +    378907 AGCGATTGAAGTGGTTGATATGTGGACTCTGCAGGTTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCCAGATCAACCACTACCCATGGGTCAGCTAAAGTAAAAATTC---TCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102134295 116 + 121039945 AGCAATTGAAGTGGTTGATATGTGGACTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTGGAGATGCCAGATCAACCGCTACCCATGGGTTAGGTATAGTAAAAATTG---TCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107341084 116 - 171882078 AGCAACTGAAGTGCTGGATATGTGGACTCTGCAGATTAGATAACCTTCCTAAGCACCTGGATGTTGAGATGCCAGATCAACCACTACCCATGGGTCAGGTAAAGTAAAAATTC---TCC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21058005 116 -  24206276 AGCAACTGAAGTGCTGGATATGTGGACTCTGCAGATTAGATAACCTTCCTAAGCACCTGGATGTTGAGATGCCAGATCAACCACTACCCATGGGTCAGGTAAAGTAAAAATTC---TCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       291209 116 -   1458659 AGCAATTGAAGTGGTTGATATGTGGACTCTGCAGATTAGATAACCTTCCTAAGCAGCTGGATGTTGAGATGCCAGATCAACCACTACCCATGGGTCAGGTAAAGTAAAAATTC---TCC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       722890 116 -    764599 AGCAACTGAAGTGCTGGATATGTGGACTCTGCAGATTAGATAACCTTCCTAAGCACCTGGATGTTGAGATGCCAGATCAACCACTACCCATGGGTGAGGTAAAGTAAAAATTC---TCT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 215709 116 -   2853901 AGCAATTGAAGTGGTTGATATGTGAACTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCTACAGGTCAGGTAAAGTATAAATTC---CCT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             497173 116 -   3282555 AGCAATTGAAGTGGTTGATATGTGAACTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCCACGGGTCAGGTAAAGTAAAAATTC---TCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       281807 116 -   1024465 AGCAATTGAAGTGGTTGATATGTGAACTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCCACGGGTCAGGTAAAGTAAAAATTC---TCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       728615 116 -   3745603 AGCAATTGAAGTGGTTGATATGTGAACTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCCACGGGTCAGGTAAAGTAAAAATTC---TCT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 914570 113 - 119751181 AGCAATTGAAGTGGTTGATATGTGAACTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCCACGGGTCAGGTAAAGTAAAAACTC------
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       638187 116 -   2566024 AGCAATTGAAGTGGTTGATATGTGAACTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCCACGGGTCAGGTAAAGTAAAAACTCTCT---
i proCoq1.NW_012149419v1    C 0 I 46
s otoGar3.GL873530            6754862 113 -  36342412 AGCAGTTGAAGTGGTTGATATGTGAACTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGAGGCTAGATCAGCCACTACCCACGGGCCAGGTAAAGTAAAAACTC------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55168209 116 + 124595110 AGCAATTGAAGTGGTTGATATGTGACCTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCCACGGGTCAGGTAAAGTAAACGTTC---TCT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 39598 116 -  40214260 AGCAATTGAAGTGGTTGATATGTGAACTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCAATACCCACGGGTCAGGTAAAGTAAAAATTC---TCC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              25714 116 -   2180720 AGCAATTGAAGTGGTTGATATGTGAACTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCCACGGGTCAGGTAAAGTAAAAATTC---TCC
i dasNov3.JH569975          C 0 C 0
e cerAty1.NW_012002657v1      1802519   8 -   1987038 I
e macNem1.NW_012011056v1      5341739 620 -   6271500 I
e rheMac8.chr7               60346797   8 + 169600520 I

a score=642418.000000
s hg38.chr15_KI270850v1_alt    181067 73 +    430880 AGTGTTCAAGAGCTAAAATAAATTGTCTCAAACAAAAGTCAAACTAGGAT-GATTTTTT----AAAAATTATTCAACT
s panTro5.chr15              17990710 73 -  83230942 AGTGTTCAAGAGCTAAAATAAATTGTCTCAAACAAAAGTCAAACTAGGAT-GATTTTTT----AAAAATTATTCAACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17217032 73 -  99763055 AGTGTTCAAGAGCTAAAATAAATTGTCTCAAACAAAAGTCAAACTAGGAT-GATTTTTT----AAAAATTATTCAACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       279665 73 +    378907 AGTGTTCAAGAGCTAAAATAAATTGTCTCGAACAACAGTCAAACTAGGAT-GATTTTTT----AAAAATTATTCAACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102134411 72 + 121039945 AGTGTTCAACAGCTAAAATAAATCGTCTCAAACAAAAGTCAAACTAGGAT-GATTTTTT-----TAAATTATTCAACT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107341200 74 - 171882078 AGTGTTCAAGAGCTAAAATAAATTGTCTCAAACAAAAGTCAAACTAGGAT-GATTTTTT---TTATTATTATTCACGT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21058121 74 -  24206276 AGTGTTCAAGAGCTAAAATAAATTGTCTCAAACAAAAGTCAAACTAGGAT-GATTTTTT---TTATTATTATTCAAGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       291325 74 -   1458659 AGTGTTCAAGAGCTAAAATAAATTGTCTCAAACAAAAGTAAAACTAGGAT-GATTTTTT---TTATTATTATTCACGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       723006 74 -    764599 AGTGTTCAAGAGCTAAAATAAATTGTCTCAAACAAAAGTCAAACTAGGAT-GATTTTTT---TTTTTATTATTCAAGT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 215825 75 -   2853901 AGTGTTCAAGAGCTAAAATAAATTGTCTCAAGCAAAAGTAAAACTAGGATGGGTTTTTC---TTTTTATTATTCAACT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             497289 74 -   3282555 AGTGTTCAAGAGCTAAAATAAATTGTCTCAAGCAAAAGTAAAACTAGGAT-GGTTTTTC---TTTTTATTATTCAACT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       281923 71 -   1024465 AGTGTTCAAGAGCTAAAATAAATTGTCTCAAGCAAAAGTAAAACTAGGAT-GGTTTTTC---TTT---TTACTCAACT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       728731 74 -   3745603 GGTGTTCAAGAGCTAAAATAAATTGTCTCAAGCAAAAGTAAAACTAGGAT-GGTTTTTC---TTTTTATTATTCAACT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 914683 49 - 119751181 -------------------------TCTCAAGCAAAAGTAAAACTAGGAT-GATTTTTC---TTTTTCTTTTTCTACT
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6754975 48 -  36342412 -------------------------TCTCAAGCAAAAGTAAAACTAGGAT-GA-TTTTC---TTTCTATTATTCTACT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55168325 71 + 124595110 AGTGTTGAAGAGCTGAACT-CATTGTCTTAATTGAAAGTTAAACTAGGAT-AATTTAA-----AATTATTATACAGCC
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 39714 73 -  40214260 AGTGTTCAAGAGTTAAA-TAAATTGTCTCGAGCAAAAGTAAAACTAGGAT-GATTTTTC---TTCTCACTATACAACT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              25830 77 -   2180720 AGTGTTCAAGAGCTAAAATAAATTGTCTCAAGCAAAAGTAAAACTAGAAG-GATTTTTCCTTTTATTATTATGCAAAT
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       638303 46 -   2566024 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5341739 620 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=1184590.000000
s hg38.chr15_KI270850v1_alt    181140 115 +    430880 TATTTAGAAGTTAG---------------------TTTTTCTGTACCTGTTAAA-----TTGTTTGTTCTGTTTTAGATACTAAAAATAACCTTTTCATTCTTTGG------AGCTGCTGGTA-TTTAGTATGGCAGGC--AAACAATTG
s panTro5.chr15              17990783 115 -  83230942 TATTTAGAAGTTAG---------------------TTTTTCTGTTCCTATTGAA-----TTGTTTGTTCTGTTTTAGATACTAAAAATAACATTTTCATTCTTTGG------AACTGCTGGTA-TTTAGTATGGCAGGC--AAACAATTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17217105 115 -  99763055 TATTTAGAAGTTAG---------------------TTTTTCTGTTCCTATTGAA-----TTGTTTGTTCTGTTTTAGATACTAAAAATAACATTTTCATTCTTTGG------AACTGCTGGTA-TTTAGTATGGCAGGC--AAACAATTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       279738 115 +    378907 TATTTAGAAGTTAG---------------------TTTTTCTGTTCCTGTTGAA-----TTATTTGTTCTGTTTTAGATACTAAAAATAACCTTTTCATTCTTTGG------AGCTGCTGGTA-TTTAGTATGGCAGGC--AAACAATTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102134483 115 + 121039945 TATTTAGGAGTTAG---------------------TTTTTCTGTTCCTATTGAA-----TTGTTTGTTCTGTTTTCGATACTAAAAATAACCTTTTCATTCTTTGG------AGCTGCTGGTA-TTTAGTATGGCAGGC--AAACAATTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107341274 122 - 171882078 CATTTAGAAGTTAG---------------------TTTTTCTGTTCCTATTGAATTGTTTTGTTTGTTCTGTTTTAGATACTAAAAATAACCTTTTCATTCTTTGG------AGCTGCTAGCA-TTTAGTATGACAGGTAAAAAAAATTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21058195 122 -  24206276 CATTTAGAAGTTAG---------------------TTTTTCTGTTCCTATTGAATTGTTTTGTTTGTTCTGTTTTAGATACTAAAAATAACCTTTTCATTCTTTGG------AGCTGCTAGCA-TTTAGTATGACAGGTAAAAAAAATTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       291399 120 -   1458659 CATTTAGAAGTTAG---------------------CTTTTCTGTTCCTATTGAATTGTTTTGTTTGTTCTGTTTTAGATACTAAAAATAACCTTTTCATTCTTTGG------AGCTGCTAGCA-TTTAGTATGACAGGT--AAAAAATTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       723080 120 -    764599 CATTTAGAAGTTCG---------------------TTTTTCTGTTCCTGTTGAATTGTTTTGTTTGTTCTGTTTTAGATACTAAAAATAACCTTTTCATTCTTTGG------AGCTGCTAACA-TTTAGTATGACAGGT--AAAAAATTG
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 215900 118 -   2853901 TATTTAGAAGTTAG--------------------CTTTTTTTGTTCCTATTGAATTG--TTGTTTGTTCTGTTTTAGGTACTAAAAATAACCTTTTCATTCTTTGG------AGCTGCTGGTA-TTTACTGT-ATAGGC--AAATAATTG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             497363 120 -   3282555 TATTTAGAAGTTAG--------------------CTTTTTTTGTTCCTATTGAATTGTTTTGTTTGTTCTGTTTTAGGTACTAAAAATAACCTTTTCATTCTTTGG------AGCTGCTGGTA-TTTACTGT-ATAGGC--AAACAATTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       281994 120 -   1024465 TATTTAGAAGTTAG--------------------CTTttttggttcctattgaattgttttgtttgttctgttttTGGTACTAAAAGTAACCTTTTCATTCTTTGG------AGCTGCTGGTA-TTTACTGT-ATAGGC--AAACAATTG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       728805 120 -   3745603 TATTTAGAAGTTAG--------------------CtttttttgttcctattgaattgttttgtttgttctgttttAGATACTGAAAATAACCTTTTCATTCTTTGG------AGCTGCTGGTA-TTTACTGT-ATAGGC--AAACAATTG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 914732 116 - 119751181 TATTTAGGAGTTAG---------------------Tttttgtgttcctgttgaattgttc----tgttttgttttAGGTACTAAAAATAAGGTTTTCATTCTTTGG------AGCTACTGGTA-TTTACTGTGACAGGC--AAACAATTG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       638349 120 -   2566024 TATTTAGAAGTTAG---------------------TTTTTGTGTTCCTGTTAAATTGTTCTGTTTGTTTTGTTTTAGCTACTAAAACTAAGATTTTCATTCTTTGG------AGCTACTGGTA-TTTGCCACGACAGGC--AAACAATTG
i proCoq1.NW_012149419v1    I 46 I 92
s otoGar3.GL873530            6755023 116 -  36342412 TATTTAGAAGTTAA---------------------TTTTTGTGTTTCTATTGATTTTTTT----GTTTTTGTTTGACGTACTAAAAATAAGATTTTCATTCTTTGC------AACTATTGGTA-TTTACTGTCACAGGC--CAATAATTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55168396 106 + 124595110 TATTTGGAAGTTAG----------------------TTTTGTGTTCCTAGTAAA---------TTGCCTTGCTTTAGGTGCTAACA-CAGGCTTTTCATTTCTTGG------GGTTGTTTGTATTTTACTGTAATAGGT--GAGCA----
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 39787 101 -  40214260 TACTTAGAAGTTAG------------------------------TCTTGTTGAA---------TTGTTTTGTTTTAGATACTAAAAATAACCTGTTTATTCTCTGG------AGCTGCTGGTA-TTCACTATGAGGAG---AAACACCTG
i canFam3.chr30             C 0 I 2
s dasNov3.JH569975              25907 141 -   2180720 TATTTACAAGTTATGTATAGTACTTAGAATCTTAATTTTTGTGTTCTTATTGAATTATTCTGTTTGTTTTGTTTTAGGCTCTGAAAATGACCTTTT------TTGGGTAACAATTTGCTGGTA-TTTATTATAGTAGGC--AAACAATTT
i dasNov3.JH569975          C 0 C 0
e cerAty1.NW_012002657v1      1802519   8 -   1987038 I
e macNem1.NW_012011056v1      5341739 620 -   6271500 I
e rheMac8.chr7               60346797   8 + 169600520 I

a score=422392.000000
s hg38.chr15_KI270850v1_alt    181255 55 +    430880 CCCTTTTCCCTAACAGCAGC-TTTTTG----TTGTGAATATTCCTGGTGTCCATAAATGT
s panTro5.chr15              17990898 55 -  83230942 CCCTTTTCCCTAACACCAGC-TTTTTG----TTGTGAATATTCCTGGGGTCCATAAATGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17217220 55 -  99763055 CCCTTTTCCCTAACACCAGC-TTTTTG----TTGTGAATATTCCTGGGGTCCATAAATGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       279853 55 +    378907 CCCTTTTCCCTAACAGCAGC-TTTTTG----TTGTGAATATTCCTGGTGTCCATAAATGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102134598 52 + 121039945 CCCTTTTCCCTAACACCAGC-TTCTTG----TT---AATATTCCTGGTGTCCATAAATGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107341396 55 - 171882078 CCCTTTTCCCTAACACCAGC-TTTTCA----TTGTTAATATTCCTGGTGTCCATAAATGT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21058317 55 -  24206276 CCCTTTTCCCTAACACCAGC-TTTTTG----TTGTTAATATTCCTGGTGTCCATAAATGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       291519 55 -   1458659 CCCTTTTCCCTAACACCAGC-TTTTTG----TTGTTAATATTCCTGGTGTCCATAAATGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       723200 55 -    764599 CCCCTTTCCCTAACACCTGC-TTTTTG----TTGTTAATATTCCTGGTGTCCATAAATGT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 216018 55 -   2853901 CCCTTCTCCCTGCCACCACC-TTTTCG----TTGTTAATATTCCTGGTTTCCATAAATGC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             497483 55 -   3282555 CCCTTCTCTCTGCCACCACC-TTTTCG----TTGTTAACATTCCTGGTTTCCATAAATGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       282114 55 -   1024465 CCCTTCTCCCTGCCACCACC-TTTTCC----TTGTTAATATTCCTGGTTTCCATAAATGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       728925 55 -   3745603 CCCTTCTCCCTGCTACCACC-TTTTCG----TTGTTAATATTCTTGGTTTCCATAAATGC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 914848 55 - 119751181 GCCCTCTCCCTACCACCACC-TTTTTG----TTCTTAACATTCTTGGTTTTCATAAATGT
i micMur3.chr3              C 0 I 37
s otoGar3.GL873530            6755139 56 -  36342412 GCCCCCTCCCTACCACTGCCATTTTTG----TTGCTGACATTCCTGGTTTCCATAAATGC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55168502 46 + 124595110 --CTGCTCTCCGACCCCTCC-ATTTTGATTTTTGTTAAAATCA-----------AAATGA
i mm10.chr9                 C 0 I 6
s canFam3.chr30                 39890 55 -  40214260 TCCCTCCCCCACTTACCACC-TTTTTG----TTGGTACCGCTCCTGATTTCTGTAACCAT
i canFam3.chr30             I 2 C 0
s dasNov3.JH569975              26048 27 -   2180720 --CTGTTCCCT-------CC-CTTTTG------GTTATTGTTC-----------------
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       638469 92 -   2566024 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5341739 620 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=343019.000000
s hg38.chr15_KI270850v1_alt    181310 51 +    430880 TCTTGCTTTTTTCATTGCTTGTCTTTGCTCATTGACTTGCCTTTACCTAGA
s panTro5.chr15              17990953 51 -  83230942 TCTTGCTTCTTTCATTGTTTGTCTTTGCTCATTGACTTGCCTTCACCTAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17217275 51 -  99763055 TCTTGCTTCTTTCATTGTTTGTCTTTGCTCATTGACTTGCCTTCACCTAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       279908 51 +    378907 TCTTGCttctttcattgcttgtctttgctcattgacttgcctttacctaga
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102134650 51 + 121039945 TCTTGCTTCTTTCATTGCTTGTCTTTGCTCATTGACTTGCCTTCACCTAGA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107341451 51 - 171882078 TCTTGCTTCTTTCATTGTTTGTCTTTGCTCATTGAATTACCTTCACCTAGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21058372 51 -  24206276 TCTTGCTTCTTTCATTGTTTGTCTTTGCTCATTGAATTACCTTCACCTAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       291574 51 -   1458659 TCTTGCTTCTTTCATTGTTTGTCTTTGCTCATTGAATTACCTTCACCTAGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       723255 51 -    764599 TCTTGCTTCTTTCATTGTTTGTCTTTGCTCACTGAATTACCTTCACCTAGA
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 216073 47 -   2853901 TCTTGCTTCTTTCA----TTGTCTTTGCTTGTTCAGTTATCTTCACCTGGA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             497538 47 -   3282555 TCTTGCTTCTTTCG----TTGTCTTTGCTTGTTCAGTCGTCTTCACCTGGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       282169 47 -   1024465 TCTTGCTTCTTTCG----TTgtctttgcttgttcagttatcttcacctgga
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       728980 47 -   3745603 TCTTGCTTCTTTCA----TTgtctttgcttgttcagttatcttcacctgga
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6755195 50 -  36342412 TCCTGTTTCTTTGCTTATTTGTCTTTGCTTATCCAGTTACCTTTACTTGG-
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55168554 43 + 124595110 TGTTTCTTCTTTGACTGGTTGT-TTAGTCAGTTTAGT--CCTTTGA-----
i mm10.chr9                 I 6 C 0
s canFam3.chr30                 39945 22 -  40214260 ----------------------------TCCTTCAGTTACCTTCACCTGG-
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              26075 49 -   2180720 -CTTGCTTCTTAAGTTGTTTGCCTTTGCTCATTATATTACCTTCACCTGA-
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 914903 37 - 119751181 I
e proCoq1.NW_012149419v1       638469 92 -   2566024 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5341739 620 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=427747.000000
s hg38.chr15_KI270850v1_alt    181361 38 +    430880 AATGCCGTCTCCTTAAGTCTGTCTGTGCTTCTTAAGGA
s panTro5.chr15              17991004 38 -  83230942 AATGCCATCTCCTTAAATCTGTCTATGCTTCTTAAGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17217326 38 -  99763055 AATGCCATCTCCTTAAATCTGTCTATGCTTCTTAAGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       279959 38 +    378907 aatgctgtcgccttaagtctgtctatgcttcttaagga
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102134701 38 + 121039945 AATGCCATCTCCTTAAGTCTGTCTATGCTTCTTAAGGA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107341502 38 - 171882078 AATGCCGTCTCCTTAAGTCTGTCTCTGCTTCTTAAGGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21058423 38 -  24206276 AATGCTGTCTCCTTAAGTCTGTCTCTGCTTCTTAAGGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       291625 38 -   1458659 AATGCCATCTCCTTAAGTCTGTCTATGCTTCCTAAGGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       723306 38 -    764599 AATGTCATCTCTTTAAGTCTGTCTCTGCTTCTTAAGGA
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 216120 38 -   2853901 AATGCCATCTCCCTAAGTCTGTCAATGCTTTTTAAGGA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             497585 38 -   3282555 AATGCCACCTCCCTAAGTCTGTCAGTGCTTTTTAAGGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       282216 38 -   1024465 aatgccatctccctacgtctgtcagtgctttttaagga
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       729027 38 -   3745603 aatgccatctccctaagtctgtcaatgctttttaagga
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 914940 38 - 119751181 AATGCCGCCTCCTTAATTCTATCTGTGCTTCTTAAGGA
i micMur3.chr3              I 37 I 1258
s proCoq1.NW_012149419v1       638561 38 -   2566024 AATGCCACCTCCTTAAGTCTGTCTGGGCTTCTTAAGGA
i proCoq1.NW_012149419v1    I 92 I 366
s otoGar3.GL873530            6755245 37 -  36342412 AATGCCATCTCC-TAAGTCTATCTGTGCTGCTTAAGGA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55168597 38 + 124595110 CGTACCATGTCTAAAAGTCTGTCTGTGCTTCTTAAGAT
i mm10.chr9                 C 0 I 2
s canFam3.chr30                 39967 36 -  40214260 ATTGCCACCTC--TAAGTCTATCTGTGCTGCTTAAGGC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              26124 38 -   2180720 AATGCTATCTTTTTAATGCCATCTGCACTTCTTAATGC
i dasNov3.JH569975          C 0 C 0
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5341739 620 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=370043.000000
s hg38.chr15_KI270850v1_alt    181399 48 +    430880 CTTGCCCAAATGTTATCTCCTGCAAGCAACAGAAATCTCCACTAGCTC
s panTro5.chr15              17991042 48 -  83230942 CTCACCCAAATGTTATCTCCTGCAAGCAACAGAAATCTCCACTAGCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17217364 48 -  99763055 CTCACCCAAATGTTATCTCCTGCAAGCAACAGAAATCTCCACTAGCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       279997 48 +    378907 cttgctcaaatgttatctcctgcaagcaacagaaatctccactagctc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102134739 48 + 121039945 CTTGCCCAAATGTTATCTCCTGCAAGCAACAGAAATCTCCACTAGCTC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107341540 48 - 171882078 CTCACCCACGTGTTATCTCCTGCAAGCAACAGAAATCACCACTAGGTC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21058461 48 -  24206276 CTCACCCACATGTTATCTCCTGCAAGCAACAGAAATCTCCACTAGGTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       291663 48 -   1458659 CTCACCCACGTGTTATCTCCTGCAAGCAACAGAAATCACCACTAGGTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       723344 48 -    764599 CTCGCCCACGTGTTATCTCCTGCAAGCAACAGAAATCACCACTAGGTC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 216158 48 -   2853901 CCAATCCAAACGTTACCTCCTACAAGCAACAGAAATTTCCGCCAGCTC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             497623 48 -   3282555 CTAACCCAAATGTTAACTCCTGCAAGCAACAGAAATTTCCGCTAGCTC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       282254 48 -   1024465 ctaacccaaatgttacctcctgcaAGCAACAGAAATTTCCGCTAGCTC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       729065 48 -   3745603 ctaacccaaatattacctcctgcaAGCAACAGAAATTTCCGCTAGCTC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6755282 34 -  36342412 ATAACCCAGAT--------------GCAACGGAAGTTTTCACTAGTTC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55168637 45 + 124595110 --AATGCAAA-GTTAGCTCTCCCAAGCCATGGAAATTTCCACCAGTTC
i mm10.chr9                 I 2 C 0
s canFam3.chr30                 40003 45 -  40214260 CTGACCCAAG-GTTACTTCT--CTGGCAGCACAAATGCCCACTAGTTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              26162 48 -   2180720 CAAACCCATATATTATCTCTTCTAAGAAGCAGAAGTGCCCACCACCTC
i dasNov3.JH569975          C 0 I 12202
e micMur3.chr3                 914978 1258 - 119751181 I
e proCoq1.NW_012149419v1       638599 366 -   2566024 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e macNem1.NW_012011056v1      5341739 620 -   6271500 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=1292162.000000
s hg38.chr15_KI270850v1_alt    181447 180 +    430880 A-CCACTACCCCTAACTTC------TTCCTGGATTTACCTAttta-ggcatcagct-attgacttttt--agtata---atatgtgagaatttagctcttataccacccact------------ttcccttcC--------------TCTTTAGTCATATAAGTAATCACTAATTATCATTAGGACTTT-----GTAAAGCCAAGTTTTGTAGAATATTTAGGAT
s panTro5.chr15              17991090 190 -  83230942 A-CCACTACCCGTAACTTC------ttcctggatttacctattta-ggcatcagct-attgacttttt--agtata---atacatgagaatttagctcttataccacccact------------ttgccttcctcaGATA----TTATCTTTAGTGATATAAGTAATCACTAATTATCATTAGGACTTC-----GAGAAGCCAAATTTTCTAGAATATTTAGGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17217412 190 -  99763055 A-CCACTACCTGTAACTTC------ttcctggatttacctattta-ggcatcagct-attgacttttt--agtata---atacatgagaatttagctcttataccacccact------------ttgccttcctcaGATA----TTATCTTTAGTGATATAAGTAATCACTAATTATCATTAGGACTTC-----GAGAAGCCAAATTTTCTAGAATATTTAGGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       280045 190 +    378907 a-ccaCTACCCCTAACTTC------TTCCTGGATTTACCTAttta-ggcatcagct-attggcttttt--agtata---atacatgagaatttagctctcataccacccact------------ttcccttcctcaAATA----TTATCTTTAGTCATATAAGTAATCACTAATTATCATGAGGACTTT-----GTAAAGCCAAGTTTTGTAGAATATTTAGGAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102134787 190 + 121039945 A-CCACTACCCCTAACTTC------ttcctggatttacctattta-ggcatcagct-attgacttttc--agtata---atacatgagaatttagctcttataccacccact------------ttcccgtcctcaaata----ttatctttagtcatataagtactcactaattatcattaggacttt-----gtaaagccaagttttgtagaatatttaggat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107341588 190 - 171882078 A-CCACTACCCCTAACTTC------TTCCTGGATTTACCTATTTA-GGCCTCTGTT-ATTGACTTTTT--AGTATA---ATACATGAGAATTTAGCTCTTATACCACCCACT------------TTCCCTTCCTCAAACA----TTATCTTTAGTCATATAAGTTATCACTAATTGTCATTAGGACTTT-----GTAAAGCCAAGTTTTCTAGAATATTTAGGAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21058509 190 -  24206276 A-CCACTACCCCTAACTTC------ttcctggatttacctattta-ggcctctgtt-gttgacttttt--agtata---atacatgagaatttagctcttataccacccact------------ttcccttccccaAATA----TTATCTTTAGTCATGTAAGTAATCACTAATTGTCATTAGGACTTT-----GTAAAGCCAAGTTTTCTAGAATATTTAGGAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       291711 190 -   1458659 A-CCACTACACCTAACTTC------TTCCTGGATTTACCTATTTA-GGCCTCTGTT-ATTGACTTTTT--AGAATA---ATACATGAGAATTCAGCTCTTATACCACCCACT------------TTCCCTTCCTCAAACC----TTATCTTTAGTCATGTAAGTTATCACTAATTGTCATTAGGACTTT-----GTAAAGCCAAGTTTTCCAGAATATTTAGGAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       723392 188 -    764599 A-CCACTACCCCTAACTTC------TTCCTGGATTTACCTATTTA-GGCCTCTGTT-ACAGACTTTTT--AGTATA---ATACATGAAAATTTAGCTCTTATAACACC--CT------------TTCCCTTCCTCAAATA----TTATCTTTAGTCATATAAGTAATCACTAATTGTCATTAGGACTTT-----GTAAAGCCAAGTTTTCTAGAATATTTAGGAT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 216206 209 -   2853901 A-CTACCACCACTGACTTC------ATTCTGGATTTACCCATTTA-GGAATCAGTT-ATTTATTTTTTTAACTATA---ATACATGAGACTTTAGCTCTTAAACTACCCACTTAACCACCCACCTCCCTTTCCTCAAATA----TTATCTTTAGTCATGTAAGTAATCACTAATTATCATTAGGACTTTGTAGAGTAAAGCCAAGTTTTCTAGAATATTTAGGGT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             497671 209 -   3282555 A-CTACCACCAGTAACTTC------ATTCTGGATTTACTTATTTA-GGCATCAGTT-ATTTATTTTTTTAACCATA---ATACATGAGAATTTCGCTCTTAAAACACCCACTTAACCACCCACCTCCCTTTCCTCAAATA----TTATCTTTAGTCATGTAAGTAATCACTAATTATAATTAGGACTTTGTAGAGTAAAGCCAAGTTTTCTAGAATATTTAGGAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       282302 209 -   1024465 A-CTACCACCACTAACTTC------Attctggatttacttattta-ggcatcagtt-atttatttttttaactata---atacatgagaatttagctcttataccacccacttaaccacccacctccctttcctcaaata----ttatctttagtcatgtaagtaattactaattataattaggactttgtagagtaaagccgagttttctagaatatttaggat
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       729113 209 -   3745603 A-CTACCACCACTAACTTC------ATTCTGGATTTACTTATTTA-GGCATCAGTT-ATTTATTTTTTTAACTGTA---ATACATGAGAATTTAGCTCTTATACCACCCACTTAACCACCCACCTCCCTTTCCTCAAATA----CTACCTTTAGTCATGTAAGTAATCACTAATTATAATTAGGACATTGTAGAGTAAAGCCAAGTTTTCTAGAATATTTAGGCT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6755316 187 -  36342412 A-CCTATATCTCTGGAT---------TTCTAGATTTACCTGTTTA-GGCATCAACC-ATTGACTTTTT--ACTATA---AGAAGTGAGCATGGAGCTCTTAGACCACTCACT----CACCCACCTTCCTTTCCTAAAACA----TTATCTTTACTCATGTGAACAGTCAC-----ATCATTAGGATTTGGTAGCATGGAATCAAGTTTTCCATGACA--------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55168682 181 + 124595110 AGCAATCATCCATGACAT----------TTAGACTTACCTAATTA-GCTATTAGTTAACTGACTTTTT--ATTACA---ATAAATGAGGATTTAGCTCTTATATAAACTACCTACTTAACCACCTACTGCTTCTAAAGCA----TTGC--TTAGTCATG--AACGATCAG----TGCTGTGAGGACTTT-----GGGGAGCCATGTTTTCTGTT-----------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 40048 208 -  40214260 A-CCACCACCTCTAACTTTTCTGGatttccagatttacctatttagggcataattt-attgactttgt--actataaatagatataaggatttaactctcatgccacgcacattcccacccac-ttcccttccTAAAACACCATTTATATTTAGTCCTATGAACAATCACTGTTTATCATTAGGACTTT-----GCAGTGTCGAGTTTTCTA-----TTTTGG--
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 914978 1258 - 119751181 I
e proCoq1.NW_012149419v1       638599 366 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cerAty1.NW_012002657v1      1802519   8 -   1987038 I
e macNem1.NW_012011056v1      5341739 620 -   6271500 I
e rheMac8.chr7               60346797   8 + 169600520 I

a score=656111.000000
s hg38.chr15_KI270850v1_alt    181627 89 +    430880 AGGATA-TTTCTTTCCTTGGTGTTGCTTTTTGTTTTGCAGTGTCTTCCTCATAACAGTAATTTTTAATTT-A-AAAAATTCTGTT---GTA-GCCC
s panTro5.chr15              17991280 88 -  83230942 AGAATA-TTTCTTTTCTTGGTGCTGCTTTTTGTTTTGCAATGTCTT-CTCATAACAGTAATTTTTAATTT-A-AAAAATTCTGTT---GTA-GCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17217602 88 -  99763055 AGAATA-TTTCTTTTCTTGGTGCTGCTTTTTGTTTTGCAATGTCTT-CTCATAACAGTAATTTTTAATTA-A-AAAAATTCTGTT---GTA-GCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       280235 89 +    378907 AGGATA-TTTCTTTTCTTGGTGTTGCTTTTTGTTTTGCAGTGTCTTCCTCATAATAGTAATTTTTAATTT-A-AAAAATTCTGTT---GTA-GCCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102134977 89 + 121039945 aggata-tttcttttcttggtgttgctttttgttttGCAGTGTGTTCCTCATGAGAGTAATTTTTAATTT-A-AAAAATTCTGTG---GTA-GCCC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107341778 89 - 171882078 AGGATA-TTTGTTTTCTTGATGGTGTTTTTAGTTTTGCAGTGTCTTCCTCTTAATAGTACTTTTTAATTT-A-AAAAATTCGGTT---GTA-GCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5342359 90 -   6271500 AGGATA-TTTCTTTTCATGGTCCTGCCTTTTGTTTTGCAGTGTCTTCCTCATAGTAGTAACTTTTAATTTAA-AAAAactctgtc---ata-tccc
i macNem1.NW_012011056v1    I 620 C 0
s chlSab2.chr29              21058699 89 -  24206276 AGGATA-TTTGTTTTCTTGATGGTGTTTTTAGTTTTGCAGCGTCTTCCTCTTAATAGTACTTTTTAATTT-A-AAAAATTCTGTT---GTA-GCCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       291901 89 -   1458659 AGGATA-TTTGTTTTCTTGATGGTGTTTTTAGTTTTGCAGTGTCTTCCTCATAATAGTACTTTTTAATTT-A-AAAAATTCTGTT---GTA-GCCC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       723580 90 -    764599 AGGATATTTTGTTTTCTTGATGGTGTTTTCAGTTTTGCAGTGTCTTCCTCCTAATAGTACTTTTTAATTA-A-AAAAATTCTGCT---GTA-GCCC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 216415 90 -   2853901 AGGATA-TTTCTCTTTTTGGGTCTGCTTTTTGTTTTGCAGTGTCTTTTTCACAATAGTAATTTTTAATTT-ACAAAAATTGTGTT---CTA-GCCC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             497880 89 -   3282555 AGGATA-TTTCTCTTCTTGGGTCTGCTTTTTGTTTTGCAGTGTCTTTTTCACAATAGtaatttttaattt-a-aaaaattGTGTT---CTA-GCCC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       282511 89 -   1024465 aggata-tttctcttcttgggtctgctttttgttttGCAGTGTCTTTTTCACAATAGTAATTTTTAATTT-A-AAAAATTGTGTT---CTA-GCCC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       729322 89 -   3745603 AGGATA-TTTCTCTTCTTGGGTCTGCTTTTTGTTTTGCAGTGTCTTTTTCACAATAGTAATTTTTAATTT-A-AAAAATTGTGTT---CTA-GCTT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6755503 85 -  36342412 ---ATG-TTTCCTTTCTTG--TGAACTGTAGGTTTTTCAGTGTCTTCCTTATAATAGCAGTTCTTAGTTTTA-AAAAACTATGTT---TTA-TTTC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55168863 85 + 124595110 ATGGCA-TTTCCATACCTGTGCATTCTTTTACTTCT-CAGGGTTCTTTTTATAGTAATACTTCCCAGTTT-A-TAAA----TGTC---ACATGCTC
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 40256 83 -  40214260 ----------CATTTCTTATAGAGCTCTTTTGTTTTGCAATGTCCTCCTTATAATAATAATTCTTAATTT-A-AAAAGTGTTGCTTgggca-gccc
i canFam3.chr30             C 0 I 206
e micMur3.chr3                 914978 1258 - 119751181 I
e proCoq1.NW_012149419v1       638599 366 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=388510.000000
s hg38.chr15_KI270850v1_alt    181716 44 +    430880 TTTCTGTGAGATCTCCTtctcttccaaagcctttggctcctctg
s panTro5.chr15              17991368 44 -  83230942 TTTCTGTGAGATCTCCTtctcttccaaagcctttggctcctgtg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17217690 44 -  99763055 TTTCTGTGAGATCATCTtctcttccaaagcctttggctcctgtg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       280324 44 +    378907 TTTCTGTGAGATCTCCTtctcttccaaagcctttggctcctctg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102135066 41 + 121039945 TTTCTGTGAGATCTC---CTCTTCCCAAGCCTTTGGTTCCTCTG
i nomLeu3.chr6              C 0 I 2311
s macFas5.chr7              107341867 43 - 171882078 -TTCTGTGAGATCTCCGtctcttccaaagcctttggctcctctg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5342449 44 -   6271500 tttctctgagatctccttctcttccaaagcctttggctcctctg
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              21058788 44 -  24206276 TTCCTGTGAGATCTCCTtctcttccaaagcctttggctcctctg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       291990 44 -   1458659 TTCCTGTGAGATCTCCTtctcttccaaagcctttggctcctctg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       723670 44 -    764599 TTCCTGTGGGATCTCCTTCTCTTCCAAAGTCTTTGGCTCCTCTG
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 216505 44 -   2853901 TTTGTGTGAGATCTCCTTCTCTTCCAAAGCCTTTGGCTCCTCTG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             497969 44 -   3282555 TTTGTGTGAGATCTCCTtctcttccaaagcctttggctcctctg
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       282600 44 -   1024465 TTTGTGTGAGATCTCCTtctcttccaaagcctttggctcctctg
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       729411 44 -   3745603 TTTGTGTGAGATCTCCTtctcttccaaagcctttggctcctctg
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6755588 29 -  36342412 TTTCTATGAGCTCTCCCTCTGTTCCA------------CCC---
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55168948 40 + 124595110 TTTCTGGGA----TCCTCTGTCTATGGAGTCCCTGTCTCTTCTG
i mm10.chr9                 C 0 I 4
s canFam3.chr30                 40545 44 -  40214260 TTCCTGTGAGCTCTTACtctcttccagagccttcggttcttttg
i canFam3.chr30             I 206 C 0
e micMur3.chr3                 914978 1258 - 119751181 I
e proCoq1.NW_012149419v1       638599 366 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e rheMac8.chr7               60346797  8 + 169600520 I

a score=282990.000000
s hg38.chr15_KI270850v1_alt    181760 41 +    430880 tgccca-ttttggca-ggttgttcttcgggttggctgtgcaca
s panTro5.chr15              17991412 41 -  83230942 tgccca-ttttggca-ggttgttcttcgggttggctgtgcaca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17217734 41 -  99763055 tgccca-ttttggca-ggttgttcttcgggttggctgtgcaca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       280368 41 +    378907 tgccca-ttttgaca-ggttgttctttgggttggctgtgcaca
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              107341910 41 - 171882078 tgccca-ttttggca-ggtcgttctttgggttggctgtgcaga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5342493 42 -   6271500 tgccca-ctttggcatggttgttctttgggttggctgtgcaga
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              21058832 41 -  24206276 tgccca-ttttggca-ggtcgttctttgggttggctgtgcaga
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       292034 41 -   1458659 tgccca-ttttggca-ggtcgttctttgggttggctgtgcaga
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       723714 41 -    764599 TGCCCA-TTTTGGCG-GATCGTTCTTTGGGTTGGCTGTGCAGA
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 216549 41 -   2853901 TGCCTG-TCTTGGCA-GGTTGTGGTTTGGGTGGGCTGTGCAGA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             498013 41 -   3282555 tgcctg-tcttagca-ggttgttgtttgggtgggctgtgcaga
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       282644 41 -   1024465 tgcctg-tcttggca-ggttgttgtttgggtggactgtgcaga
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       729455 41 -   3745603 tgcctg-tcttggca-ggttgttgtttgggtgggctgtgcaga
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6755617 40 -  36342412 TACCTAGTCTTGGCA-GTTTGTGCCCTTGGCTGGCTGTATA--
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55168992 37 + 124595110 AATTAG-TCTTTGTG-AGTT----CTCGGATGGCCTGTACAGT
i mm10.chr9                 I 4 C 0
s canFam3.chr30                 40589 41 -  40214260 cagcag-ccttgcca-ggttgtcctctgggctggctgtgcagc
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 914978 1258 - 119751181 I
e proCoq1.NW_012149419v1       638599 366 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e rheMac8.chr7               60346797  8 + 169600520 I
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=1104071.000000
s hg38.chr15_KI270850v1_alt    181801 138 +    430880 tgtcatcttgaggtttttctcatctgctcgcctagagtacatccattgtttcctggatcccatgtcatcttctttggctt-tcccttt-----gtca---ttttacctgactatgtcctcaagtaaaaccctaagaaagcatggagt---
s panTro5.chr15              17991453 138 -  83230942 tgtcatcttgaggtttttctcatctgctctcctagagtacatccattgtttcctggatcccatgtcatctttcttggctt-tcccttt-----gtca---ttttacctgactatgtcctcaagtaaaaccctaagaaagcatggagt---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17217775 138 -  99763055 tgtcatcttgaggtttttctcatctgctctcctagagtacatccattgtttcctggatcccatgtcatctttcttggctt-tcccttt-----gtca---ttttacctgactatgtcctcaagtaaaaccctaagaaagcatggagt---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       280409 138 +    378907 tgtcatcttgaggtttttctcatctgctctcctagaggagacccactgtttcctggatcccatgtcatcttctttggctt-tcccttt-----gtca---ttttacctgactatgttctcaagtaaagccctaagaaagcatggagt---
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              107341951 138 - 171882078 tgtcaccttgaggtttttctcatctgctctcctagagtagatccatagtttcctggatcccatgtcatctttcttggctt-tcccttt-----gtca---ttttacctgactatgtcctcaagtaaaaccctaagaaagcgtggagt---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5342535 138 -   6271500 tgtcatcttgaggtttttctcatctgctctcctagagtagatccattgtttcctggatcccatgtcatctttcttggctt-tcccttt-----gtca---ttttccctgactatgtcctccagtaaaacccaaaggaagcatagagt---
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              21058873 138 -  24206276 tgtcaccttgaggtttttctcgtctgttctcctagagtagatccatagtttcctggatcccatgtcatctttcttggctt-tcccttt-----gtca---ttttacctgactgtgtcctcaagtaaaaccctaagaaagcatggagt---
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       292075 138 -   1458659 tgtcaccttgaggtttttctcatctgctctcctagagtagatccatagtttcctggatcccatgtcatctttcttggctt-tcccttt-----gtca---ttttacctgactatgtcctcaagtaaaaccctaagaaagcgtggagt---
i manLeu1.NW_012105520v1    C 0 I 709
s colAng1.NW_012118866v1       723755 116 -    764599 TGTCA----------------------tctcctagagtagatccatagtttcctggatcccatgtgttctttcttggctt-tcccttt-----gtca---ttttacctgactatgtcctcaagtaaaacccaaaggaagcatggagt---
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 216590 136 -   2853901 Tatcatcttgaggtttttttgatctgctctcctagagtagatccattctttcctgtatcccatattgtctttcttggctt-a-ccttt-----ctca---ttttgcctgaccacgtcctcaagtaaaa-cctacgtaagtatggagc---
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             498054 137 -   3282555 taccatcttgaggttttttaaatctgctctcccagagtcgatccattctttcctggatcccatattgtctttcttggctt-acccttt-----ctca---ttttgcctgaccacatcctcaagtaaaa-cctacgaaagcatggagc---
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       282685 140 -   1024465 aatcatcttgaggttttttaaatctgctctcttagagtagatccattctttcctagatcccatattgtctttcttggctt-atccttt-----ctcatttttttgcctgaccacgtcctcaagtaaaa-cctacgaaagcatggagc---
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       729496 137 -   3745603 tatcatcttgaggtttttttaatctgctctcctagagtagatccattcttccctggatcccatattgtctttcttggctt-acccttt-----ctca---ttttgcctgaccacgtcctcaagtaaaa-cctacgaaagcatggagc---
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       638965 137 -   2566024 tgtcatcttgaggattttcttgtctgctctcctagaggagatccgttgtttcccggatctcatgacgcctttc-tggctc-acccttt-----ctcg---ccgtgcctgagtacatcctccagtaaaacactaaggaagcgtggaga---
i proCoq1.NW_012149419v1    I 366 C 0
s otoGar3.GL873530            6755657 136 -  36342412 -GCGGTCCTGAGATTTTTCTTGTGTGTTCTTTAAGAGtagatccattg-ttcctggatctcacagcatctttcttggcttaacccttt-----ctca---tt-tgcctggggatatcctcaagaaaaacactaagaaagcatggagt---
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55169029 139 + 124595110 TGTCACCTTGAGATTTTTCTTTTCTGCTATCCTAGAGCGAATCTATTGATTCCTGGATCTCATGTCATCTCTATTGGCTT-TCTTTTTTCTTGTTCG---TCTCTATTTATTACACTGTCGGATAAAGGCC----GAAGCATGAAGG---
i mm10.chr9                 C 0 I 3
s canFam3.chr30                 40630 131 -  40214260 tgtcatctggaaatattt---gtctcctccactagtgtggatccactgtcatctg-atctcatgtcctctttctt-gcta-acccttt-----ctca---ttttgcctgagtacatccccaaggaaaatcct-----agcttgaaggaat
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 914978 1258 - 119751181 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cerAty1.NW_012002657v1      1802519   8 -   1987038 I
e rheMac8.chr7               60346797   8 + 169600520 I
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=317664.000000
s hg38.chr15_KI270850v1_alt    181939 41 +    430880 ggtata-ttttctgatctctagcttctg---aaaaAATACAATCC
s panTro5.chr15              17991591 41 -  83230942 ggtata-ttttctgatctctggcttctg---aaaaAATACAATGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17217913 41 -  99763055 ggtata-ttttctgatctctggcttctg---aaaaAATACAATGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       280547 42 +    378907 ggtata-ttttctgatctctagcttctg--aaaaAAATACAATCC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              107342089 41 - 171882078 ggtata-ttttctgatctctagcttctg---aaaaAATACAATCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5342673 44 -   6271500 ggcata-ttttctgatctctagcttctgaaaaAAAAATGCAATGC
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              21059011 41 -  24206276 gatata-ttttctgatctctagcttctg---aaaaaatacaatcc
i chlSab2.chr29             C 0 I 1102
s manLeu1.NW_012105520v1       292922 41 -   1458659 ggtata-ttttctgaTCTGTAGCTTCTG---AAAAAATACAATCC
i manLeu1.NW_012105520v1    I 709 C 0
s colAng1.NW_012118866v1       723871 42 -    764599 ggtata-ttttctgaTCTCCAGCTTCTG--AAAAAAATACAATCC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 216726 41 -   2853901 agtaca-ttttctgaactctagcttctg---aaaaAATACTGTCC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             498191 41 -   3282555 agaaca-ttttctgagctctagcttctg---aaaaAATACTGTCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       282825 41 -   1024465 agaaca-ttttttgggctttagcttctg---aaaaAATACTGTCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       729633 41 -   3745603 agtaca-ttttctgagctctagcttctg---aaaaAATACTGTCT
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       639102 41 -   2566024 ggtaca-ttttctgagttctagcttctg---aaaaagtACggtct
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6755793 42 -  36342412 ggaacacttttctgagttctggcttctg---aaaaAATACAGTCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55169171 38 + 124595110 GGCATA-TTTCCTGAGTT--AGCTTTTG---AAAAACCTGGTTC-
i mm10.chr9                 I 3 C 0
s canFam3.chr30                 40761 36 -  40214260 agtaca-ttttctgagttctaacattga---aaaATATAT-----
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 914978 1258 - 119751181 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e rheMac8.chr7               60346797  8 + 169600520 I
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=1816478.000000
s hg38.chr15_KI270850v1_alt    181980 231 +    430880 AGTGTTTgggttttggagccagtctgagataggtttgaatcttggttctactacttattagctgtatgcccttgggcagattccctaattgctctatgcatcaa-tttccatttgcaaaatgggggaaccagtaatagtattagtacctatgtttctagggagctgtgaggattaaatgagttggtacatgtaaaccatttagaacagtgcctggtgcttagCCCATCCCCA-
s panTro5.chr15              17991632 231 -  83230942 AGTGTTTgggttttggagccagtctgagataggtttgaatcttggttctactacttcttagctgtatgcccttgggctgattccataattgctctatgcatcaa-tttccatttgcaaaatgggggaaccggtaatagtattagtacctatgtttctagggagctgtgaggattaaatgagttggtacatgtaaaccatttagaacagtgcctggtgcttagcaCATCTCCA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17217954 231 -  99763055 agagtttgggttttggagccagtctgagataggtttgaatcttggttctactacttcttagctgtatgcccttgggctgattccataattgctctatgcatcaa-tttccatttgcaaaatgggggaaccggtaatagtattagtacctatgtttctagggagctgtgaggattaaatgagttggtacatgtaaaccatttagaacagtgcctggtgcttagcaCATCTCCA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       280589 231 +    378907 AGTGTTTgggttttggagccagtctgagataggtttgaatcttggttctactacttattagctgtatgcccttgggctgattccctaattgctctatgcatcaa-tttccatttgcaaaatgggggaaccagtaatagtattagtacctgtgtttctagagagctgtgaggattaaatgagttggtacatgtaaaccatttagaacagtgcctggtgcttagCCCATCCCCA-
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              107342130 232 - 171882078 AGTGTTTgggttatggagccagtctgagataggtttgaatcttggttctactacttattagctgtatgcccttgggctgattccctaagtgctctatgcatcaattttccatttgcaaaatgggggagccagtaatagcattagtacctatgtttctagggagctatgaggattaaatgagttggtacatgtaaaccatttagaacagtgcctggtgcatagcaCATCCCCA-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5342717 231 -   6271500 AGTGTTTggattttggagtcagtc-gagatagatttgaatcttggttctactacttattagctgtatgcccttgggctgattccctaagtgctgtgtgcatcagttttccatttgcaaaatgggtgagccagcaatagtattagtacctatgtttctagggcgctatgagaattaaatgagttggaacgtgtaaaccatttagaacagtgcctggtgcatagcaCATCCCCA-
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              21060154 232 -  24206276 AGTGTTTgggttatggagccagtctgagataggtttgaatcttggttctactacttgttacctgtatgcccttgggctgattccctaagtgctctatgcatcaattttccatttgcaaaatgggggagccagtaatagtattagtacctatgtttctagggcgctatgaggattaaatgagttggtacgtgtaaaccatttagaacagtgtctggtgcatagcaCATCCCCA-
i chlSab2.chr29             I 1102 C 0
s manLeu1.NW_012105520v1       292963 232 -   1458659 AGTGTTTgggttatggagccagtctgagataggtttgaaccttggttctactgcttattagctgtatgcccttgggctgattccctaagtgctctatgcatcaattttccatttgcaaaatggggaagccagtaatagtattagtacctatgtttctagggagctatgatgattaaatgagttggtacatataaaccatttagaacagtgcctggtgcatagcaCATCCCCA-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       723913 232 -    764599 AGTGTTTgggttatggagacaatctgagataggtttgaatcttggttctactacttattacctgtatgcccttgggctgattccctaagtgctctatgcatcaattttccatttgcaaaatgggggagccagtaatagtattagtacctatgtttctagggagctatgaggattaaatgagttggtacttgtaaaccatttagaacagtgcctggtgcatagcacatgcccG-
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 216767 226 -   2853901 AGTGTTTgggttttggagccagtctga------tttgaatcttggttctgctacttagtagctctctgcccttgggctgattccctaattgctctgtgcatgaattttccatttgcaaaatggaggaaccagtaatagtagtagtacctatgtttttagggaactatgaggattaaatgagttggtacatgtaaaccatttaaaacagtgcctggcgcataacacactccca-
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             498232 225 -   3282555 AGTGTTTgggttttggagccagtctga------tttgaatcttggttctgctacctactagctctgtgcccttgggctgaatccctaactgctctatgcatgaattttccgtttgcaaaatgg-gggaccagtagtagtagtagtacctatgtttttagggaactctggggattaaatcagttggtccatgtaaaccgtttagaacagtgtctggtacgtaacacaccccca-
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       282866 226 -   1024465 AGTGTTTgggttttggagccagtctga------tttgaatcttggttctgctgcttactagctctgtgcccttgggctgattccctaattgctctaggcatgaattttccatttgcaaaatgggggaaccagtaatagtagtaatacctatgtttttagggaactatgaggtttaaatgagttggtacatgtaaaccatttagaacagtgcctggtacataacacattccca-
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       729674 226 -   3745603 agtgtatgggttttggagccagtctga------tttgaatcttggttctgctacttactagctctgtgcccttgggctgattccctaattgctctatgcatgaattttccatttgcaaaatgagggaaccagtaatagtaatagtacctatgtttttagggaactatgaggattaaatgagttggtacatgtaaaccatttagaacagtgcctggtgcataacacactccca-
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       639143 223 -   2566024 agagtttgggttttagagccagaccgccatgggtttgaatcttggttctgttgcttgttagctgtgtgtctttggg-taattacctaatcactct--gcctcaatttcctatttgtaaaacggaggaa------atggtagtagtacctatatttttggggagttgtaaggattaaatgagttggtgtatgtaaattatttagaacagtgcccagtgcatagtatattttca-
i proCoq1.NW_012149419v1    C 0 I 34
s otoGar3.GL873530            6755835 223 -  36342412 agagtttgggttttggaactagaccactatgagtttgagtctttgttccattagttattaagcatattcctttggactaattacctaatcactct--gcatcagtttcccatttgcaaaatgggggag------atagtagtagtatctctattttgggggagtta-aaagattaaatgagttgttacatgtcaagtatttagaatagtgcctggtggatagtaTatttcca-
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55169209 172 + 124595110 AGAGTT--GGTGTTAGAACAAGCCCGC------------------CCACACTGGTTCCAAAATGTGGTTCTTGTTGCCATCTTCCTAGT--CTTTGACCAC----TTCTCACTTGTACA---GAGTAGTCGGTCGGAGTGGT---------------------TTGTCAGCACT------GCAGGTATTCTAAAAGCAGT--GCGCAGTGCT--GTACATGGGAGTTGTGTG-
i mm10.chr9                 C 0 I 3
s canFam3.chr30                 40797 206 -  40214260 ----------------ATccagaccactgtaggtttgaatcttggttctgctacgtaatagctgtatgatcttgagatgattacctaaccactct--gctttaatatcttgtttgtaaaatgggggag---------atagtagtatctctattttgggggagctataaagagtaaatgagttagtacatgtaaatcatttagagcggtgcctggtgtatagtaaatgcccaa
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 914978 1258 - 119751181 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cerAty1.NW_012002657v1      1802519   8 -   1987038 I
e rheMac8.chr7               60346797   8 + 169600520 I
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=278712.000000
s hg38.chr15_KI270850v1_alt    182211 45 +    430880 TCACTATTCACTTTTGTCAtagtctaccctcacacttgattgata
s panTro5.chr15              17991863 45 -  83230942 TCACTATTCACTTTTGTCAtagtctaccctcacacttcattgata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17218185 45 -  99763055 TCACTATTCACTTTTGTCAtagtctaccctcacacttgattgata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       280820 45 +    378907 TCACTATTCACTTTTGTCAtagtctaccctcacacttgattgata
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              107342362 45 - 171882078 TCACTATTCTCTTTTGTCAtagtctaccctcacacttgatggata
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5342948 45 -   6271500 TCACTATTCACTTTTGTTAtaatctacccttacacttgattgata
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              21060386 45 -  24206276 TCACTATTCTCTTTTGTCAtaatctaccctcacacttgacggata
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       293195 45 -   1458659 TCACTATTCTCTTTTGTCAtagtctaccctcacacttgatggata
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       724145 45 -    764599 TCACTATTCTCTTTTGTCAtagtctaccctcacacttgatggata
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 216993 45 -   2853901 tcaatgttCACTTCTGTCAtattctacccgcacactagattgata
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             498457 45 -   3282555 TCAGCGTTCACTTCTGTTGtattctacctgcgcactagattgata
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       283092 37 -   1024465 tcaatgttCACTTCTGTCAtattctacccacacacta--------
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       729900 45 -   3745603 tcaatgttCACTTCTATCAtattctatctgcacactagattgata
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6756059 45 -  36342412 taaatgttaacctttgttatgttctgtgtacatacttgattgaaa
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  55169384 37 + 124595110 TCAGTATCAGCTGCTGTTGTGTTCT---CTTTCACTCAGT-----
i mm10.chr9                 I 3 C 0
s canFam3.chr30                 41003 45 -  40214260 taaatgttacttgctattAtattttacagtcgtatttgattgata
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 914978 1258 - 119751181 I
e proCoq1.NW_012149419v1       639366 34 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cerAty1.NW_012002657v1      1802519  8 -   1987038 I
e rheMac8.chr7               60346797  8 + 169600520 I
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=2087686.000000
s hg38.chr15_KI270850v1_alt    182256 261 +    430880 gtttggttgattat-------gtat--ttctaggttgaggataattttaccttagaatttcaaa-gtctgtgctgttgtcttctaaccagtcatggtggtgaggcctcatgtcaccctgagtttcactcattcatgcatgactttctctctggaagc-ttttaggagtttgtcttttccttggtgagctgaaatagcacaacattgtactta-------------------g-----tgtgtgtc---ttttttcattcactg-tgctgggtacaccaaatggataggcctatggatcgt
s panTro5.chr15              17991908 261 -  83230942 gtttggttgattat-------atac--ttctaggttgaggataattttaccttagaatttcaaa-gtctgtgctgttgtcttctaaccagtcatggtggtgaagcctcatgtcaccctgagtttcactcatttatgcatgactttctctctggaagc-ttttaggagtttgtcttttccttggtgagctgaaatagcacaacattgtactta-------------------g-----tgtgtgtc---ttttttcattcactg-tgctgggcacactgaatcgataggcctatggatagg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17218230 261 -  99763055 gtttggttgattat-------atac--ttctaggttgaggataattttaccttagaatttcaaa-gtctgtgctgttgtcttctaaccagtcatggtggtgaagcctcatgtcaccctgagtttcactcatttatgcatgactttctctctggaagc-ttttaggagtttgtcttttccttggtgagctgaaatagcacaacattgtactta-------------------g-----tgtgtgtc---ttttttcattcactg-tgctgggcacactgaatcgataggcctatggatagg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       280865 261 +    378907 gtttggttgattat-------gtat--ttctaggttgaggataattttaccttagaatttcaaa-gtctgtgctgttgtcttctaaccagtcatggtggtgaagcctcatgtcaccctgagtttcactcatttatgcatgactttctctctggaagc-ttttaggagtttgtcttttccttggtgaactgaaatagcacaacattgcactta-------------------g-----tgtgtgtc---ttttttcattcactg-tgctgggtacaccaaatggataggcctatggatcgg
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              107342407 258 - 171882078 gtttggttgattat-------gtat--ttctaggttgaggataattttaccttagaatttcaaa-gtctgtgctgttgtcttctaaccagttgtggtggtgaagcctcatgtcatcctgagtttcactcatttatacatgactt----tctggaagc-ttttaggagtttgtcttttccttggtgagctgaaatagcacaacattgtactta-------------------g-----tgagggtct--ttttttcattcattg-tgctgggtacaccaaatggataggcgtatggatggg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5342993 256 -   6271500 gtttggttgattat-------gtat--ttctaggttgaggataattttgccttagaatttcaaa-gtctgtgctgttgtcttctaaccagtcatggtggtgaagcctcatgtcatcctgagtgtcactcatttaggtatgactttctctctggaagc-ttttaggattttgtcttttccttggtgagctgaaatagcacaacattgtactta-----------------------------ggtc---ttttttcattcactg-tgctgggtacaccgaatggataggcctatggatagg
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              21060431 258 -  24206276 gtttggttgattat-------gtat--ttctaggttgaggataattttaccttagaatttcaaa-gtctatgctgttgtcttctaacctgttgtggtggtggaacctcatgtcatcctgagtttcactcatttatgcatgactt----tctggaagc-ttttaggagtttgtctttcccttggtgagctgaaatagcacaacattgtattta-------------------g-----tgtgggtct--ttttttcattcattg-tgctgggtacaccaaatggataggcctatggatggg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       293240 258 -   1458659 gtttggttgattat-------gtat--ttctaggttgaggataattttaccttagaatttcaaa-gtctgtgctgttgtcttctaaccagttgtggtggtggaacctcatgtcatcctgagtttcactcatttatgcatgactt----tctggaagc-ttttaggagtttgtcttttccttggtgagctgaaatagcacaacattgtactta-------------------g-----tgtgggtct--ttttttcattcgttg-tgctgggtacaccaaatggataggcgtatggatggg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       724190 258 -    764599 gtttggttgattat-------gtat--atctaggttgaggataattttaccttagaatttcgta-gtctgtgctgttgtcttctaaccagttgtggtggtggagcctcaggtcatcctgagtttccctcattcatgcatgactt----tctggaagc-ttttaggagtctgtcttttccttggtgagctgaaatagcacaacattgtactta-------------------g-----tgtgggtct--ttttttcattcattg-tgctggatacaccgaatggacaggcctatggacggg
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 217038 259 -   2853901 gtttggttgattat-------gtat--ttctaggttgaggataattttaccttagaatttcaaa-gtctgtgctgttgccttctaacaagtcgtgggggtgaattcttatgccatcctgagtttcacttatttatgcatgactttctctctggaagc-ttttaggagtttctctttctcttggtgagctgaaatagcacaacaatatactta-------------------g-----tgtggg-----tttttttattcattg-agctgggtacactgaatggataggcctatggatagg
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             498502 256 -   3282555 gttcggttgattct-------gtat--ttctaggtggaggataattttaccttagaatttcaaa-gtctgtgctgttgtcttctaaccagtcat---ggtgaattcttacgccatcctgagtttcactcatttatgcatgactttctctctggaagc-ttttaggagtttgtcttttccttggtgagccaaaatagcacaacagtacactta-------------------g-----tgtggg-----ttttttaattcatca-agctgggtacactgagtggataggcctatggatagg
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       283129 251 -   1024465 ----ggttgattat-------gtat--ttctaggttgaggataattttaccttagaattttaaa-gtctgtgctgttgtcttctaaccagtcgt---ggtgaattcttatgccatcctgagtttcactcatttatgcatgactttctctctgggagctttttaggagtttgtcttt-tcttggtgagctgaaatagcacaacagtatactta-------------------g-----tgtggg------tttttaattcatcg-agctgggtacgctgaatagataggcctagggatagg
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       729945 260 -   3745603 gtttggttgattat-------gtat--ttctaggttgaggataattttaccttagaatttcaaa-gtctatgctgttgccttctaaccagtcgtggtggtgaattcttatgccatcctgagtttcactgatttatgcatgactttctctctggaagc-ttttaggagtttgtcttttccttggtcagctgaaatagcacaacagtatacttt-------------------g-----tgtgggt----tttctttattcatcg-agctgggtacactgaatggataggcctatggacagg
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       639400 248 -   2566024 gattgtttgaatct-------gtaa--ttttaggttgaagataattttacctcaaaatttc--a-gactgtgcttttatcttctaac-agtggtggtattgaagcctgatgtcattctgtgttttactcatttatgtatgactttctttcttgaagc-ttttaggaatt--tcttttccttagtgttctgaaatatcacagtgatgtactta-------------------g----ctgtgggtc---ttttttcgttgactg-tgctgggtactcagtatgggtaggcct---------
i proCoq1.NW_012149419v1    I 34 C 0
s otoGar3.GL873530            6756104 257 -  36342412 ----gtttgaatatatacatagtga--ttctaggttgaagataattttacctcagaattttgaa-gactatgcttttatcttctgac-agtggtggtgttgaagccttatgtcagactgagttttattcattaacatatgactttctctattgaaac-ttttaggaatt--tctcttcatttgggttctgaaatatcatgacgatgtactta-------------------ggatcttgtgggtc---ttctttcatcggttg-tgctgggtactcagtatggataggcct---------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55169421 235 + 124595110 gtttgagtgaata--------ataa--atctaggctgaa---atttttgcctaagaatttcaaataactatgctgttgtcttctagccagtggcgtagctgaag-ctgatgccacccggaat--------cttatgtatgattt-ttctttggaagc-ttcagggaatttgtgctttctttggtg---taatgcactgcagcagtgtcctta-------------------a----ctcaggatc---ttttctctttcattg-cgctggacgt------tgagtaaggctgtgt-----
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 41048 262 -  40214260 gtttagttgaatat-------atataattctaggtggaaaataattttccctcagaatttcaaa-gactgtgctgtcgtcttctagccaaaggtggtgtttaagcctaatgccattctaagtcttcctcatctgtgcatgac------tcgggagac-tttaaagaatttgtc------ttggtgttctcaaatattgcaatggtatatttttagttgtggctttttttgtg-----tgcgtgttttgcttttgttttcattgttgctggacactcagtatggatggt------------
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 914978 1258 - 119751181 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cerAty1.NW_012002657v1      1802519   8 -   1987038 I
e rheMac8.chr7               60346797   8 + 169600520 I
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=984095.000000
s hg38.chr15_KI270850v1_alt    182517  98 +    430880 -ctctttcaaagttggaatctt----gaatcttg------------------t---------------catattt---t-t-------gttaactttctcctttccattt----tatttgttca-ttttgaagtgtctgttaattggatttt
s panTro5.chr15              17992169  98 -  83230942 -ctctttcaatgttggaatctt----gaatcttg------------------t---------------catattt---t-t-------gttaactttctcctttccattt----tatttgttca-ttttgaagtgtctgttaattggatttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17218491  98 -  99763055 -ctctttcaatgttggaatctt----gaatcttg------------------t---------------catattt---t-t-------gttaactttctcctttccattt----tatttgttca-ttttgaagtgtctgttaattggatttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       281126  98 +    378907 -ctctttcaaagttgtaatctt----gaatcttg------------------t---------------catattt---t-t-------gttaactttctcctttccattt----tatttgttca-ttttgaagtgtctgttaattggatttt
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60346805  98 + 169600520 -CTCTTTCAAAGTTGGAATCTT----GAATCTTT------------------T---------------CATCTTT---T-T-------GTTAACTTTTTCCTTTCCATTT----TATTTGTTCA-TTTTGAAGTGTCCATTAATTGGATTTT
i rheMac8.chr7              I 8 C 0
s macFas5.chr7              107342665  98 - 171882078 -gtctttcaaagatggaatctt----gaatcttg------------------t---------------catattt---t-t-------gttaactttctcttttccattt----tatttgtttg-ttttgaaatgtctgttaattggatttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5343249  98 -   6271500 -ctctttcaaagttggaatctt----gaatcttg------------------t---------------catattt---t-t-------gttaactttctcctttccattt----tatttgatca-ttttgaggcatctgttaattggatttt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1802527  98 -   1987038 -CTCTTTCAAAGTTGGAATCTT----GAATCTTG------------------T---------------CATCTTT---T-T-------GTTAACTTTCTCCTTTCCATTT----TATTTGTTCA-TTTTGAAGTGTCCATTAATTGGATTTT
i cerAty1.NW_012002657v1    I 8 C 0
s chlSab2.chr29              21060689  98 -  24206276 -gtctttcaaagatggaatctt----gaatcttg------------------t---------------catattt---t-t-------gttaactttctcttttccattt----tatttgtttg-ttttgaaatgtctgttaattggatttt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       293498  98 -   1458659 -gtctttcaaagatggaatctt----gaatcttg------------------t---------------catattt---t-t-------gttaactttctcttttccattt----tatttgtttg-ttttgaaatgtctgttaattggatttt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       724448  98 -    764599 -gtctttcaaagatggaatctt----gaatctgg------------------t---------------catattt---t-t-------gttaactttctcttttccattt----tatttgtttg-ttttgaaatgtctgttaattggatttt
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 217297 101 -   2853901 -ttcttttaaagttggaatctt----gaatcttg------------------t---------------catatttttct-t-------ggtaactttctcctttcacttt----catttgttca-ttttgaagtatctgttaattggatttt
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             498758  99 -   3282555 -ttcttttaaagttggaatctt----gaatcttg------------------t---------------cgtatttttct-t-------ggtaactttttcctttcccttt----catttgttca-ttttgaagtgtc--ttaattggatttt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       283380 101 -   1024465 -ttcttttaaagttggaatctt----gaatcttg------------------t---------------catatttttct-t-------ggtaacttttccctttcccttt----catttgttca-ttttgaagtgtctgttaattggatttt
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       730205 101 -   3745603 -ttcttttaaagttggaatctt----gaatcttg------------------t---------------cgtatttttct-t-------ggtaactttctcctttcccttt----catttgttca-ttttgaagtgtctgttaattggatttt
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       639648 104 -   2566024 ----tttcaaatttggaatcttgaaataatcttg------------------t---------------ttttttt---t-tttttt--actaactttctcctttccattt----tatttattca-cattggaatgcctgctaattggatttt
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6756361 110 -  36342412 ----tttcaaacttggaatctt-cagtcatctta------------------tatatatatatatatattttttt---t-tttttcaaactatctttctcctttccattt----tatttattca-ttttgaaatgcctacta----------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55169656  97 + 124595110 -ccctttccaaatttgagtctt----gagttttg------------------g-------------tacatattt---t-tgTGT---GTTAACTTT-GCTTGTCTATTT----TGTTTGTT-----TTGGA--GTTTATTAACTGGACTTT
i mm10.chr9                 C 0 I 1788
s canFam3.chr30                 41310 123 -  40214260 tcttttcaaatgttggactcct----ttatctttctctgggggtaagtgtgct---------------tgtattc---tgt-------gatgactttctcctttccgttttctctatttgttcatttttagaatgcctaccaatgggatttt
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 914978 1258 - 119751181 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=346664.000000
s hg38.chr15_KI270850v1_alt    182615 40 +    430880 agtcctcttgT-TTGAGTC-TTGTATCTCACGTCATTTCTAA
s panTro5.chr15              17992267 40 -  83230942 agtcctcttgt-ttgagtc-ttgtatctcatgtcatttctaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17218589 40 -  99763055 agtcctcttgt-ttgagtc-ttgtatctcatgtcatttctaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       281224 40 +    378907 agtcctcttgT-TTGAGTC-TTGTATCTCACGTCATTTCTAA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60346903 41 + 169600520 AGTCCTCTTGTCTTGAGTC-TTGTATCTCACGTTATTTCTAA
i rheMac8.chr7              C 0 I 3
s macFas5.chr7              107342763 41 - 171882078 agtcctcttgTCTTGAGTC-TTGTATCTCACGTTATTTCTAA
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011056v1      5343347 41 -   6271500 agacctcttgtcttgactc-ttgtatctcatgttatttctaa
i macNem1.NW_012011056v1    C 0 I 1
s cerAty1.NW_012002657v1      1802625 41 -   1987038 AGTCCTCTTGTCTTGAGTC-TTGTATCTCACGTTATTTCTAA
i cerAty1.NW_012002657v1    C 0 I 2
s chlSab2.chr29              21060787 41 -  24206276 agtcctcttgtcttgagtc-ttgtatctcacattatttctaa
i chlSab2.chr29             C 0 I 1
s manLeu1.NW_012105520v1       293596 41 -   1458659 agtcctcttgTCTTGAGTC-TTGTATCTCACGTTATTTCTAA
i manLeu1.NW_012105520v1    C 0 I 1
s colAng1.NW_012118866v1       724546 41 -    764599 agtcctcttgTCTTGAGTC-TTGTATCTCACGTTATTTCTAA
i colAng1.NW_012118866v1    C 0 I 1
s calJac3.chrY                 217398 41 -   2853901 agaccacttgTCTTGAGTC-TTGTATCTCatattatttctaa
i calJac3.chrY              C 0 I 4
s saiBol1.JH378276             498857 41 -   3282555 agaccacttgTCTTGAGTC-TTGTAGCTCATATTATTTCTAA
i saiBol1.JH378276          C 0 I 323
s cebCap1.NW_016107979v1       283481 41 -   1024465 agaccacttgtcttgagtc-ttgtatcccatattatttctaa
i cebCap1.NW_016107979v1    C 0 I 4
s aotNan1.NW_018511953v1       730306 41 -   3745603 agaccacttgTCTTGAGTC-TTGTGTCTCATATTATTTCTAA
i aotNan1.NW_018511953v1    C 0 I 4
s proCoq1.NW_012149419v1       639752 41 -   2566024 agacatcttggcttgagtt-gtatctcttacattatttctaa
i proCoq1.NW_012149419v1    C 0 I 4
s otoGar3.GL873530            6756471 13 -  36342412 ---------------aatT-CTACCTCTT-------------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 41433 33 -  40214260 agacctc------tgagtctttgcatcctttattctctc---
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 914978 1258 - 119751181 I
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=-1718.000000
s hg38.chr15_KI270850v1_alt    182655 2 +    430880 TT
s panTro5.chr15              17992307 1 -  83230942 -t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17218629 1 -  99763055 -t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       281264 2 +    378907 TT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60346947 2 + 169600520 TC
i rheMac8.chr7              I 3 C 0
s macFas5.chr7              107342805 2 - 171882078 TC
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011056v1      5343389 2 -   6271500 tt
i macNem1.NW_012011056v1    I 1 C 0
s cerAty1.NW_012002657v1      1802668 2 -   1987038 TT
i cerAty1.NW_012002657v1    I 2 C 0
s chlSab2.chr29              21060829 2 -  24206276 tc
i chlSab2.chr29             I 1 C 0
s manLeu1.NW_012105520v1       293638 2 -   1458659 TC
i manLeu1.NW_012105520v1    I 1 C 0
s colAng1.NW_012118866v1       724588 2 -    764599 TC
i colAng1.NW_012118866v1    I 1 C 0
s calJac3.chrY                 217443 2 -   2853901 tt
i calJac3.chrY              I 4 I 1
s cebCap1.NW_016107979v1       283526 2 -   1024465 tt
i cebCap1.NW_016107979v1    I 4 I 1
s aotNan1.NW_018511953v1       730351 2 -   3745603 TT
i aotNan1.NW_018511953v1    I 4 I 1
s proCoq1.NW_012149419v1       639797 1 -   2566024 t-
i proCoq1.NW_012149419v1    I 4 C 0
s otoGar3.GL873530            6756484 1 -  36342412 T-
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 914978 1258 - 119751181 I
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e canFam3.chr30                 41466 0 -  40214260 C
e nomLeu3.chr6              102135107 2311 + 121039945 I
e saiBol1.JH378276             498898 323 -   3282555 I

a score=450493.000000
s hg38.chr15_KI270850v1_alt    182657 49 +    430880 TTTTTTAAA-TTTTAAGTTCTGGAATATTTTTCTTATTTTTTGACTTTTA
s panTro5.chr15              17992308 49 -  83230942 ttttttaaa-ttttaagttctggaatatttttcttattttttgactttta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17218630 49 -  99763055 ttttttaaa-ttttaagttctggaatatttttcttattttttgactttta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       281266 49 +    378907 TTTTTTAAA-TTTTAAGTTCTGGAATATTTTTCTTATTTTTTGACTTTTA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60346949 49 + 169600520 TTTTTTACA-TTTTAAGTTCTGGAATATTTTTCTTGTCTTTGAACTTTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107342807 49 - 171882078 TTTTTTAAA-TTTTAAGTTCTGGAATATTTTTCTTATCTTTTGACTTTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5343391 48 -   6271500 ttttttaaa-ttttaaattctggaat-tttttcttatctttTGACTTGTA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1802670 49 -   1987038 TTTTTTACA-TTTTAAGTTCTGGAATATTTTTCTTATCTTTGAACTTTCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21060831 49 -  24206276 ttttttaaa-ttttaagttctggaatatttttcttatcttttgactttta
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       293640 49 -   1458659 TTTTTTAAA-TTTTAAGTTCTGGAATATTTTTCTTATCTTTTGACTTTTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       724590 49 -    764599 TTTTTTAAA-TTTTAAGTTCTGGAATATTTTTCTTATCTTTTGACTTTTA
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 217446 47 -   2853901 -ttatttaa-ttttaaaatCTGGAATATTTTTCTTACCTTTCAACTTTT-
i calJac3.chrY              I 1 C 0
s saiBol1.JH378276             499221 48 -   3282555 -TTCTTTAATTTTTAAAATCTGGAATATTTTTCTTATCTTTCAACTTTT-
i saiBol1.JH378276          I 323 C 0
s cebCap1.NW_016107979v1       283529 47 -   1024465 -ttctttaa-ttttaaaatctggaatatttttcttatctttcaactttt-
i cebCap1.NW_016107979v1    I 1 C 0
s aotNan1.NW_018511953v1       730354 47 -   3745603 -TTCTTTAA-TTTTAAAATCTGGAATATTTTTCTTATCTTTCAACTTTT-
i aotNan1.NW_018511953v1    I 1 C 0
s proCoq1.NW_012149419v1       639798 43 -   2566024 accttttaa-ttctaaattctggaatatttttct-----ttcaactttT-
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6756485 44 -  36342412 TTCTTTTAA-TTCTAAATTCTGGAATATTTTTTT----CTTCAACTTTT-
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 41466 39 -  40214260 tttttttAA-TTTCAAATTCTGGAA----------GTTTTTCAAATTTTA
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 914978 1258 - 119751181 I
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=540805.000000
s hg38.chr15_KI270850v1_alt    182706 54 +    430880 GGAAATTTTATTTGGACAGTCATAACTTT--AAGTTTtgttttggttatttat---tgt
s panTro5.chr15              17992357 54 -  83230942 ggaaattttatttggacagtcttaacttt--aAGTTTtgttttggttatttat---tgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17218679 54 -  99763055 ggaaattttatttggacagtcttaacttt--aagttTtgttttggttatttat---tgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       281315 53 +    378907 GGAAATTTTATTTGGACAGTCATAACTTT--AAGTTTtgttttggtta-ttat---tgt
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60346998 54 + 169600520 GGAAATTTTCTTTGCACAACCATAACTTT--AAGTTTtgttttggttattaat---cgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107342856 54 - 171882078 GGAAATTTTATTTGTATAGTCATAAATTT--AAGTTTtgttttggttatttat---tgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5343439 54 -   6271500 GGAAATGTTATTTGGACAGTCAAAACTTT--AAGTTTtgttttggttatttat---tgt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1802719 54 -   1987038 GGAAATTTTCTTTGCACAACCATAACTTT--AAGTTTtgttttggttattaat---cgt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21060880 54 -  24206276 ggaaattttatttgggtagtcataaattt--aagttTtgttttggttatttat---tgt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       293689 54 -   1458659 GGAAATTTTATTTGTATAGTCATAAATTT--AAGTTTtgttttggttatttat---tgt
i manLeu1.NW_012105520v1    C 0 I 920
s colAng1.NW_012118866v1       724639 54 -    764599 GGAAATTTTATTTGGATAGGCATAAATTT--AAGTTTtgttttggttatttat---tgt
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 217493 43 -   2853901 GGAAATTTTATTTGGACAGTCATAACT----AAGTT---------ttatatag---tgt
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             499269 47 -   3282555 GGAAATTTTATTTGGACAGTCATAACTTGACAAGTT---------ttatttat---tgt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       283576 45 -   1024465 ggaaattttatttggacagtcataacttt--aagtt---------ttatttat---tgt
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       730401 45 -   3745603 GGAAATTTTATTTGGACAGTCATAACTTT--AAGTT---------ttatttat---tgt
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 916236 54 - 119751181 GGAAATTTTATATGGACAGCCATAAATTT--AAGTTTtgttttgcttatttat---tgc
i micMur3.chr3              I 1258 I 1
s proCoq1.NW_012149419v1       639841 54 -   2566024 GGAAATTTTATTTGGACAGCCATAACTTT--AAGTTTtgttttggttatttat---tgc
i proCoq1.NW_012149419v1    C 0 I 1
s otoGar3.GL873530            6756529 57 -  36342412 GGAAATTTTATTTGGACAGTAATAACTTT--AAAGTTTTTTTTGGTTATttatttgttg
i otoGar3.GL873530          C 0 I 1
s canFam3.chr30                 41505 45 -  40214260 --AAATT-----TGGACAGCATAACCTTT--CAGTT--GTTTTAATTATTTAC---TGC
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=1287558.000000
s hg38.chr15_KI270850v1_alt    182760 115 +    430880 tgcttaaccaattttcccaaaacttaatggcataaaactacacatttgtctatctgtcactactgtatgggctaactgggggtagctggacagtttttctgctggtctca-tttgg-----
s panTro5.chr15              17992411 115 -  83230942 tgcttaaccaattttcccaaaacttaatggcataaaactacacatttgcctgtctgtcactactgtatgggttaactggggctagctggacagtttttctgctggtctca-tttgg-----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17218733 115 -  99763055 tgcttaaccaattttcccaaaacttaatggcataaaactacacatttgcctgtctgtcactactgtatgggttaactggggctagctggacagtttttctgctggtctca-tttgg-----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       281368 115 +    378907 tgcttaaccaatttttccaaaacataatggcataaaactacacatttgtctatctgtcactactgtatgggctaactggggatagctggacagtttttctgctggtctca-tttgg-----
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60347052 115 + 169600520 tgcttaaccaattttcccaacacttagtggcataaaactgcacatttgtctatctgtcactaccgtatgggttaactggggctaactggacagtttttctgctggtctca-tttgg-----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107342910 115 - 171882078 tgcttaactaattttcccaacacttaatggcataaaatcacacatttgtctatctgtcactaccgtatgggttaactggggctaactggacagtttttctgctggtctca-tttgg-----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5343493 116 -   6271500 tgcttaaccaattttcccaaaacttaatggcataaaactacacatttatctctctgtcactactgtatgggttaactggggatagctggacagtttttcttctggtctcattttgg-----
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1802773 115 -   1987038 tgcttaaccaattttcccaacacttagtggcataaaactgcacatttgtctatctgtcagtaccaggtgggttaactggggatagctggacagtttttctgctggtctca-tttgg-----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21060934 115 -  24206276 tgcttaactaattttcccaacacttaatggcataaaatcacacatttgtctatctgtcagtaccaggtgggttaactggggctagctggacagtttttctgctggtctca-tttgg-----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       294663 115 -   1458659 tgcttaactaattttcccaacacttaatggcataaaatcacacatttgtctatctgtcactactgtatgggttaactggggctaactggacagtttttctgctggtctca-tttgg-----
i manLeu1.NW_012105520v1    I 920 C 0
s colAng1.NW_012118866v1       724693 115 -    764599 tgcttaaccaattttcccaacacttaatggcataaaaccacacatttgtctatctgtcactactgtatgggttaactgggactaactggacaatttttctgctggtttca-tttgg-----
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 217536 115 -   2853901 tgcttaaacagttatcccaaaacctaatggcgtaaaacaacacctttgtctatttctcattactctgtgggttaactggaactagctggacagtttttctgctggtgtca-tctgg-----
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             499316 115 -   3282555 tgcgtaaacagttattccaacacttaatggcgtaaaacaacacctttgtctgtttctcactactctgtgggttaactgggactagctggacagtttttctgctggtctca-tctgg-----
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       283621 115 -   1024465 tgcttaaacagttatcccaaaacttaatggcataaaacaacacccttgtctatttctcactactctgtgggttaactgggactagctggacagtttttctgctggtctca-tctgg-----
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       730446 115 -   3745603 tgcttgaacagttatcccaaaacttaatggcataaaacaacacctttgtctatttctcactactctgtgggttaactgggactagctggacagtttttctgctgatctta-tctgg-----
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 916291 115 - 119751181 cgcttaaccaattaccccaaaacttaatggcataaaacaacaattttatctgtctcttgctattgtatgggataactaggcttagccgaacagttttcctgctggtctca-tttgg-----
i micMur3.chr3              I 1 C 0
s proCoq1.NW_012149419v1       639896 114 -   2566024 tgcttaaccaattaccccaaaacttaatggcataaaacaacaattttatctatctcttgctgttgtatgggatagctaggctta-ccagacagttttcctgctggtctca-tttgg-----
i proCoq1.NW_012149419v1    I 1 I 225
s otoGar3.GL873530            6756587 115 -  36342412 tgtttaactaattattccaaaatttaatgacataaaacaaccatttcatttgtcccttgctattgtatgggataactagacttggctggatagtttttcttctggtctca-tttgg-----
i otoGar3.GL873530          I 1 C 0
s canFam3.chr30                 41550 103 -  40214260 CTCTTAACCAGTTACCCTGA-ACTTAAT----------------TTGTTTTATTTCCTACAATTGTGTGGGCTGATTAGGCTTAGCTCCACAGtttttgttttttttttt-tttttttCTG
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=139734.000000
s hg38.chr15_KI270850v1_alt    182875 14 +    430880 catctctcactgtg
s panTro5.chr15              17992526 14 -  83230942 catctctcactgtg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17218848 14 -  99763055 catctctcactgtg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       281483 14 +    378907 catctctcactgtg
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60347167 14 + 169600520 catctctcactgtg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107343025 14 - 171882078 catctctcactgtg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5343609 14 -   6271500 tatttctcactgtg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1802888 14 -   1987038 catctctcactgtg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21061049 14 -  24206276 catctctcactgtg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       294778 14 -   1458659 catctctcactgtg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       724808 14 -    764599 catctctcactgtg
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 217651 14 -   2853901 caactctcactgtg
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             499431 14 -   3282555 taactctcacggag
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       283736 14 -   1024465 taactctcactgag
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       730561 14 -   3745603 caactctcactgtg
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 916406 14 - 119751181 ggactctcactgtg
i micMur3.chr3              C 0 I 210
s otoGar3.GL873530            6756702 12 -  36342412 --acactcactgtg
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 41653 14 -  40214260 CTGGCCACACTGCA
i canFam3.chr30             C 0 C 0
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=634047.000000
s hg38.chr15_KI270850v1_alt    182889  74 +    430880 cggttagacggtgtcagagac---tg--gtcatctggat---gctcagctgcagtg--------------------------------------------gaatgtct------------------------------------------------------------gagacggctgcttcaccc
s panTro5.chr15              17992540  74 -  83230942 cggttagatggtgtcagggac---tg--gtcatttggat---tctcagctgcagtg--------------------------------------------gaatgtct------------------------------------------------------------gagacggctacttcaccc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17218862  74 -  99763055 cggttagatggtgtcagggac---tg--gtcatttggat---tctcagctgcagtg--------------------------------------------gaatgtct------------------------------------------------------------gagacggctacttcaccc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       281497  74 +    378907 cggttagacggtgtcagagac---tg--gtcatctggat---gctcagctgcagtg--------------------------------------------gaatgtct------------------------------------------------------------gagatggctgcttcaccc
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60347181  74 + 169600520 cagttagatggtgtcagggac---tg--gtcatctggat---gctcagctgcagtg--------------------------------------------gagtgtct------------------------------------------------------------gagatggcttcttcaccc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107343039  74 - 171882078 cagttagatggtgtcagggac---tg--gtcatctggat---gctcagctgcagtg--------------------------------------------gaatgtct------------------------------------------------------------gagatggcttcttcaccc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5343623  74 -   6271500 tggttagacggtatcagggac---tg--gtcatctggat---actcagctgcagtg--------------------------------------------gaatgtct------------------------------------------------------------gagacagcctcttcaccc
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1802902  74 -   1987038 cagttagatggtgtcagggac---tg--atcatctggat---gctcagctgcagtg--------------------------------------------gagtgtct------------------------------------------------------------gagatggcttcttcaccc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21061063  74 -  24206276 cagttagatggtgtcagggac---tg--gtcatctggat---actcagctgcagtg--------------------------------------------gaatgtct------------------------------------------------------------gagatggcttcttcaccc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       294792  74 -   1458659 cagttagatggtgtcagcaac---tg--gtcatctggat---gctcagctgcagtg--------------------------------------------gagtgtct------------------------------------------------------------gagatggcttcttcaccc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       724822  74 -    764599 cagttagatggtgtcagggac---tg--gtcatctggat---gctcagctgcagtg--------------------------------------------gagtgtct------------------------------------------------------------gagatggcttcttcaccc
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 217665  74 -   2853901 cagttagacagtggcagggag---tg--gccgtctggat---gctcagctgcagtg--------------------------------------------cagtgtct------------------------------------------------------------gatatggcttcttcatcc
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             499445  73 -   3282555 tggttagacagtggcagggac---tg--gccgtctgggt---gctcagctgcagcg--------------------------------------------cagtgtc-------------------------------------------------------------gagacgccttcttcatcc
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       283750  74 -   1024465 cggttagacagtggcagggac---tg--gccgtctggat---gctcaactccagtg--------------------------------------------cagtgtct------------------------------------------------------------gatacggcttcttcatct
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       730575  74 -   3745603 cggttagacggtggcagggac---tg--gcagtctggat---gctcagctgcagtg--------------------------------------------cagtgtct------------------------------------------------------------gagacggcttcttcatcc
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6756714  72 -  36342412 cagttagatggtggctggtac---tagtgtcatctggac---gctggactacactg--------------------------------------------gaaagtct------------------------------------------------------------gagaggacttcttc----
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 41667 184 -  40214260 CAGTCAGATAGTGGCTGGGACCAATG--GTCATTTGGACACGACTGCACTGCAGTGTCCAAAATGCTTCTTTACTgggacacctgggtggctcatcagttgagtgtctgcctttgcttaaggtcatgatcccgggtccagggatcgagtaccgtgtcgggctccctgcgaggagcctgcttctccc
i canFam3.chr30             C 0 I 119
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=984457.000000
s hg38.chr15_KI270850v1_alt    182963 102 +    430880 acaggtctgctgccttggtgtttcttcttgtggccttctcctctgcatagcgtct-catcctct-------caggcctctttgtgtggtttctctttctccaagaggata
s panTro5.chr15              17992614 102 -  83230942 acaggtctgctgccttggtgtttcttcatgtggccttcctctctgcatagcatct-catccttt-------caggcctcttcaagtggtttctctttcgccaagaggata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17218936 102 -  99763055 acaggtctgctgccttggtgtttcttcatgtggccttcctctctgcatagcatct-catccttt-------caggcctcttcaagtggtttctctttcgccaagaggata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       281571 102 +    378907 acaggtctgctgccttggtgtttcttcttgtggccttgctctctgcatagcatct-catcctct-------caggcctctttgtgtggtttctctttctccaagaggata
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60347255 102 + 169600520 acaggtctgctgtcttggtgtttcttcatgtggccttcctctctgcatagcgtct-catcctct-------cgggcctcttcatgtggcttgtctttctccaagaggata
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107343113 102 - 171882078 acaggtctgctgtcttggtgtttcttcatgtggccttcctctctgcatagcgtct-catcctct-------cgggcctcttcatgtggcttgtctttctccaagaggata
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5343697 102 -   6271500 acaggtctgccgccttggtgtttcttcatgtggccttcctctctgcctagcatct-cgtgctct-------gaggcctcttcatgtggcttctctttctccaagaagata
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1802976 102 -   1987038 acaggtctgctgtcttggtgtttcttcatgtggccttcctctctgcatagcatct-catccttt-------cgggcctcttcatgtggcttgtctttctccaagaggata
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21061137 102 -  24206276 acaggtctgctgtcttggcgtttcttcatgtggccttcctctctgcatagcatct-catgctct-------tgggcctcttcatgtggcttgtctttctccaagaggata
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       294866 102 -   1458659 acaggtctgctgtcttggtgtttcttcatgtggccttcctctctgcatagcatct-catcctct-------cgggcctcttcatgtggcttgtctttctccaagaggata
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       724896 102 -    764599 acaggtctgctgtcttggtgtttcttcatgtggccttcctctctgcatagtgtct-catcctct-------cagacctcttcatgtggcttgtctttctccaagaggata
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 217739 102 -   2853901 acagggctgctgccttgctgtttcttcatgtggtgcttctctctgcatagcatct-catcctct-------tgggcctcttcatgtggcttctctttctccaggaggata
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             499518 102 -   3282555 acagggctgctgcgttgctgtttcttcatgtggctcttctctctgcatagcatct-catcctct-------tgggcctcttcatgtggcttctccttatccaggaggata
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       283824 103 -   1024465 gcagggctgctgccttgctatttcttcatgtggcccttctttctgcatagcatctccatcctct-------tgggcctcttcatgtggcttctccttatgtaggaggata
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       730649 102 -   3745603 acagggctgctgtcttgttgtttcttcatgtggcccttctctctgcatagcatct-catcctct-------tggacctcttcatttggcttctctttctccaggaggata
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6756786  96 -  36342412 tcaggtctggtg--ttggcatttcttcacatggtctttcTCTGTGCATGACCTCT-CAGCTGTG-------TGAGCCTCTTTGTGTGGCTTCTCTT----CAGGATGACA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 41970 109 -  40214260 ACCTGTCTGGTACCTTGGTATTTCTTCACATAGCCCTTCTTTTCTCCTGACATCT-CATCCTCTTCTTGGATAgacctcttcttgtggcttctctttcttcagaaaggta
i canFam3.chr30             I 119 C 0
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=1010146.000000
s hg38.chr15_KI270850v1_alt    183065 121 +    430880 --gtcagtactta--ttttggctactagaagcacagaagtgg-agctgccaggtgttcttaaggc---ttagacctggaacaggtccagtgtcatttctaccaaattctataggttaaagtgagtcttg
s panTro5.chr15              17992716 120 -  83230942 --gtcggtactta--ttttggctactagaagcacagaagtgg-agctgcca-gtgttcttaaggc---ttagacctggaacaggtccagtgtcatttctaccaaattctataggttaaagtgagtcttg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17219038 120 -  99763055 --gtcggtactta--tttgggctactagaagcacagaagtgg-agctgcca-gtgttcttaaggc---ttagacctggaacaggtccagtgtcatttctaccaaattctataggttaaagtgagtcttg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       281673 121 +    378907 --gtcagtactta--ttttggctactagaagcaaagaagtgg-agctgccaggtgttcttaaggc---ttagacctggaacaggtccagtgtcatttctaccaaattctataggttaaagtgagtcttg
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60347357 122 + 169600520 --gccaattgtta-tttttggcttccagaagcacagaagcgg-agctgccaggtgttctgaaggc---ttagacctggagcaggtccagtgtcatttctaccaaattctctaggttaaagtgagtcttg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107343215 122 - 171882078 --gccaattgtta-tttttggcttccagaagcacagaagcgg-agctgccaggtgttctgaaggc---ttagacctggagcaggtccagtgtcatttctaccaaattctctaggttaaagtgagtcttg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5343799 120 -   6271500 --gtcagtactta--ttttggcttccagaagcacagaagtgg-agctgccaggtgttcttcagac---ttagacctggaa-aggtccagtgtcatttccagcacattctctaggctagagtgagtcttg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1803078 122 -   1987038 --gccaattgtta-tttttggcttccagaagcacagaagtgg-agctgccaggtgttcttaaggc---ttagacctggagcaggtccagtgtcatttctaccaaattctctaggttaaagtgagtcttg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21061239 121 -  24206276 --gccaattgtta-tttttggcttccagaagcacagaagagg-agctgccaggtgttcttaaggc---ttagacctggaa-aggtccagtgtcatttctaccaaattctctaggttaaagtgagtcttg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       294968 122 -   1458659 --gtcaattgtta-tttttggcttccagaagcacagaagcgg-agctgccaggtgttcttaaggc---ttagacctggagcaggtccagtgtcatttctaccaaattctctaggttaaagtgagtcttg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       724998 122 -    764599 --gccaattgtta-tttttggcttccagaagcacagaagtgg-agctgccaggtgttcttaaggc---ttagacctggaacaggtccagtgtcatttctaccaaattctctaggttaaattgagtcttg
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 217841 122 -   2853901 --ctgagttctta-tttttgacttccagaagcacagaagtggtagctgcccggtgtttttaaggc---ttagacctggaacagg-ccagtgtcatttctaccacattttataggttaaagtgagtcttg
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             499620 122 -   3282555 --ctcagttctta-tttttgacttccagaagcacagaagtggtagctgcccggtgtttttaaggc---ttagacctggaacagg-ccagtgtcatttctgccacattttgtaggttaaagtgagtcttg
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       283927 122 -   1024465 --ctcagttctta-tttttgacttccagaatcacagaagtggtagctgcccggtgtttttaagac---ttagacctggaacagg-ccagtgtcatttctgccacattttgtaggttaaagtgagtcttg
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       730751 122 -   3745603 --ctcagttctta-tttttgacttcaagaagcacagaagtggtagctgcccggtgtttttaaggc---ttagacctggaacagg-ccagtgtcatttctgccacattttgtaggttaaagtgagtcttg
i aotNan1.NW_018511953v1    C 0 I 1336
s canFam3.chr30                 42079 127 -  40214260 gtccaaattcctaagttttagctgccaagagtgcaaaagtagaagctgtcagcccttcttaaggcttattagttctggaactggcccagtgtcctttctaccacatttatt--gttaaagccggtcatg
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e otoGar3.GL873530            6756882   0 -  36342412 C
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=660345.000000
s hg38.chr15_KI270850v1_alt    183186 81 +    430880 aggccaacccagattcactgtg--ggatgggcctgtccagggacatg-ataacaggaggttaggctcattggggaccaactCCC--
s panTro5.chr15              17992836 81 -  83230942 aggccaacccagattcactgtg--ggatgggcctgtccaagaacatg-ataacaggaggtatggctcattggggaccaACTCCC--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17219158 81 -  99763055 aggccaacccagattcactgtg--ggatgggCCTGTCCAAGAACATG-ATAACAGGAGGTATGGCTCATTGGGGACCAACTCCC--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       281794 81 +    378907 aggccaacccagattcactgtg--ggatgggcctgtccagggacatg-ataacaggaggttaggctcattggggaccaactCCC--
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60347479 81 + 169600520 gggccaacccagattcactgtg--ggatgggcctgttcaaggacatg-gtgacaggaggtgtggctcattggggatcaACTCCC--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107343337 81 - 171882078 gggccaacccagattcactgtg--ggatgggcctgttcaaggacatg-gtgacaggaggtgtggctcattggggaccaactCCC--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5343919 81 -   6271500 gggccaacacagattcactgtg--ggatgggcctgtccaaggacatg-atgacaggaggtgtggttcattggggaccaACTCCC--
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1803200 81 -   1987038 gggccaacccagattcactgtg--ggatgggcctgttcaaggacatg-gtgacaggaggtgtggctcattggggatcaACTCCC--
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21061360 81 -  24206276 gggccaacccagattcactatg--ggatgggcctgttcaaggacatg-gtgacaggaggtgtggctcattggggatcaactCCC--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       295090 81 -   1458659 gggccaacccagattcactgtg--ggatgggcctgttcaaggacatg-acgacaggaggtgtggctcattggggaccatcTCCC--
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       725120 81 -    764599 gggccaactcagattcactgtg--ggatgggcctgtccaaggacatg-gtgacaggaggtgtggctcattggggaccaAGTCCC--
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 217963 81 -   2853901 gggccaacccagattcactgtg--tgatgggcctttccaaggacatg-atgacaggaggtgtggctcattggggaccaACTCCC--
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             499742 81 -   3282555 gggccaacccagattcactgtg--tgatgggcctttccaaggacgtg-atgacaggaggtgtggctcattggggaccaACTCCC--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       284049 81 -   1024465 gggccaacccagattcactgtg--tgatgggcctttccaaggacatg-aggacaggaggtgtggctcattggggaccaactCCC--
i cebCap1.NW_016107979v1    C 0 C 0
s canFam3.chr30                 42206 84 -  40214260 tggccagcctagattgactgtggaggaggggaccataaaaggggatgaatgctgggggatgtggttcattggagg--aactctcca
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e aotNan1.NW_018511953v1       730873 1336 -   3745603 I
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e otoGar3.GL873530            6756882  0 -  36342412 C
e nomLeu3.chr6              102135107 2311 + 121039945 I

a score=1160872.000000
s hg38.chr15_KI270850v1_alt    183267 139 +    430880 AAGATGAACCCTGAGttctaagaactttttctt-ctctgattattccatattcatattctaattttgttttattcatgtaatatattcacaagtgtccttatgaagtgattttgatgctcttttgtctt--ctccctagcat
s panTro5.chr15              17992917 139 -  83230942 AAGATGAACCCTGAGttctaagaactttttctt-ctctgattattccttattcatattctatttttgttttattcttgtaatatattcacaagtgtctttatgaagtgattttgatactcttttgtctt--ctccctagcat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17219239 138 -  99763055 AAGATGAACCCTGAGTTCTAAGAAC-TTTTCTT-CTCTGATTATTCCTTATTCATATTCTATTTTTGTTTTATTCTTGTAATATATTCACAAGTGTCTTTATGAAGTGATTTTGATACTCTTTTGTCTT--CTCCCTAGCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       281875 139 +    378907 AAGATGAACCCTGAGTTCTAAGAACTTTTTCTT-GTCTGATTATTCCATATTCATATTCTAATTTTGTTTTATTCATGTAATATATTCACAAGTGTCCTTATGAAGTGATTCTGATGCTCTTTTGTCTT--CTCCCTAGCAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102137418 139 + 121039945 agGATGAACCCTGAGttctaagaagtttttctt-ctctgattattccttattcatattctgtttttgttttattcatgtaatgtattcacaagtgtctttatgaagtgattttgatactcttctgtctt--ctccctagcat
i nomLeu3.chr6              I 2311 C 0
s rheMac8.chr7               60347560 138 + 169600520 AAGATGAACCCTGAGTTCTAAGAACTTTTTCTT-CTCTGATTATTCCTTATTCATATTCTA-TTTTGTTTTATTCATCTAATACATTCACAAGTGTCTTTATGAAGTGATTTTGATACTCTTTTGTCTT--CTCCCTTGCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107343418 138 - 171882078 AAGATGAACCCTGAGttctaagaactttttctt-ctctgattattccttattcatattcta-ttttgttttattcatctaatacattcagaagtgtctttacaaagtgattttgatactcttttgcctg--ctccctagcgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5344000 139 -   6271500 AAGTTGAGCCCTGAGTTCTAAGAACtttttctt-ttctgattattccttattcatattctatttttgttttattcATGTAATATATTCACAAGTGTCTTTATGAAGTGATTTTGACACTCTTTTGTCTT--CTCCCTAGCAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1803281 138 -   1987038 AAGATGAACCCTGAGTTCTAAGAACTTTTTCTT-CTCTGATTATTCCTTATTCATATTCTA-TTTTGTTTTATTCATCTAATACATTCACAAGTGTCTTTATGAAGTGATTTTGATACTCTTTTGTCTT--CTCCCTTGCAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21061441 138 -  24206276 AAGATGAACCCTGAGttctaagaactttttctt-ctctgattattccttattcatattcta-ttttgttttattcatctaatacgttcacaagtgtctttatgaagtgattttgatactcttttgcctg--ctccctagcgt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       295171 138 -   1458659 AAGATGAACCCTGAGTTCTAAGAACTTTTTCTT-CTCTGATTATTCCTTATTCATATTCTA-TTTTGTTTTATTCATCTAATACATTCACAAGTGTCTTTACGAAGTGATTTTGATACTCTTTTGCCTG--CTCCCTAGCGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       725201 138 -    764599 AAGATGAACCCTGAGTTCTAAGAACTTTTTCTT-CTCTGATTATTCCTTATTCATGTTCTA-TTTTGTTTTATTCATGTAATACATTCACAAGTGTCTTTATGAAGTGATTTTGATACTCTTTTGTCTG--CTCCCTAGCAT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 218044 136 -   2853901 AAGATGAACTCTGAGGtctaagaaccttttctt----tgactattttttatacatattctatttttgttctatggatgtaatatattcataaatgtctttaaggagctattttgatactctttggctct--ttccctaacat
i calJac3.chrY              C 0 I 303
s saiBol1.JH378276             499823 135 -   3282555 AAGATGAACTCTGAGGtctaagaaccttttctt----tgattagtttttatacatattctatttttgttctatggatgtaatatattcataaatgtctttaaggagctattttgatactctttggctc---ttccctaacat
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       284130 136 -   1024465 AAGATGAACTCTGTGGTCTAAGAAACTTTTCTT----TGATTATTTTTTATACATATTCTATTTTTGTTCTATGGATGTAATATATTCATAAGTGTCTTTAAGGAGCTATTTTGATACTTTTTGGCTCT--CTCCCTAACAT
i cebCap1.NW_016107979v1    C 0 C 0
s canFam3.chr30                 42290 135 -  40214260 atggtgtaccataAGttctaagaactttttcttgttctaattattctttattcatattat--ttttgatttatagatgtaa-----tcataagtgtccttaaggagttactttgatatccttgtcctctccctctctggcat
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e aotNan1.NW_018511953v1       730873 1336 -   3745603 I
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e otoGar3.GL873530            6756882   0 -  36342412 C

a score=843618.000000
s hg38.chr15_KI270850v1_alt    183406 105 +    430880 --ctctttgttctttaataaattt----------------ttttcttagtttatt-ttggtcttatttttctttttaaaacctttccttaaa---tatctATTCTATGTTGCTTATCATTTGTAGTC
s panTro5.chr15              17993056 105 -  83230942 --ctctttgttctttaataaattt----------------ttttcttagtttatt-ttggtcttatttttcttcttaaaacctttccttaag---tatctATTCTATGTTGCTTATCATTTGTAGTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17219377 105 -  99763055 --CTCTTTGTTCTTTAATAAATTT----------------TTTTCTTAGTTTATT-TTGGTCTTATTTTTCTTCTTAAAACCTTTCCTTAAG---TATCTATTCTATGTTGCTTATCATTTGTAGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       282014 105 +    378907 --CTCTTTGTTCTTTAATAAATTT----------------TTTTCTTAGTTTATT-TTGGTCTTATTTTTCTTTTTAAAACCTTTCCTTAAA---TATCTATTCTATGTTGCTTATCATTTGTAGTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102137557 105 + 121039945 --ctcttttttctttaataaattt----------------gtttcttagtttatt-ttggtcttatttttctttttaaaacctttccttaaa---tatctTTTCTATGTTGCTTATCATTTGTAGTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60347698 105 + 169600520 --CTCTTTGTTCTTTAATAAATTT----------------TTTTCTTAGTTTATT-TTGGTCTTATTTTTCTTTTCAAAGCCTTTCTTTAAA---TATGTATTCTGTGTTGCTTATCATTTGCAGTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107343556 105 - 171882078 --ttctttgttctttaataaattt----------------ttttcttagtttact-ttggtcttattttactttttaaggcctttccttaaa---tatctattctatgttgtttatcatTTGTAGTC
i macFas5.chr7              C 0 M 100
s macNem1.NW_012011056v1      5344139 108 -   6271500 --CTCTTTGTTCTTTAATAAA-TT----------------TTTTCTTAGTTTATTATTTGTCTTATTTTTCTTTTTAAAGCCTTTCCTTAAATTTTATCTATTCTATGTTGCTTATCATTTGTAGTC
i macNem1.NW_012011056v1    C 0 I 9
s cerAty1.NW_012002657v1      1803419 105 -   1987038 --CTCTTTGTTCTTTAATAAATTT----------------TTTTCTTAGTTTATT-TTGGTCTTATTTTTCTTTTTAAAGCCTTTCTTTAAA---TATGTATTCTGTGTTGCTTATCATTTGCAGTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21061579 105 -  24206276 --ctctttgttctttaataaattt----------------ttttcttagtttact-ttggtcttattttactttttaaggcctttccttaaa---tacctATTCTATGTTGTTTATCATTTGTAGTC
i chlSab2.chr29             C 0 I 9
s manLeu1.NW_012105520v1       295309 105 -   1458659 --CTCTTTGTTCTTTAATAAATTT----------------TTTTCTTAGTTTACT-TTGGTCTTATTTTACTTTTTAAGGCCTTTCCTTAAA---TATCTATTCTATGTTGTTTATCATTTGTAGtt
i manLeu1.NW_012105520v1    C 0 I 22
s colAng1.NW_012118866v1       725339 105 -    764599 --CTCTTTGTTCTTTAATAAATTT----------------TTTTCTTAGTTTACT-TTGGTCTTATTTTACTTTGTAAAGCCTTTCCTTAAA---TATCTATTCTATGTTGTTTATCATTTGTAGTC
i colAng1.NW_012118866v1    C 0 I 3
s calJac3.chrY                 218483 105 -   2853901 --ctcttttttctttgataaattt----------------atttagtagtctatt-tatatttatgtatttattttaaagcctttcctcaag---tatctgTTCTATGTTGCTCATCATTTGTAGTC
i calJac3.chrY              I 303 I 1
s saiBol1.JH378276             499958 104 -   3282555 --ctcttttttctttaat-aattt----------------atttagtagtctgtt-tatatttatgtatttattttaaagcttttcctcaag---tatctattctatgttgctcatCATTTGTAGTC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       284266 105 -   1024465 --CTCttttttctttaataaattt----------------atttagtagtctatt-tatatttatgcatttatttTAAAGCCTTTCCTCAAT---TATCTGTTCTATGTTGCTCATCATTTGTAGTC
i cebCap1.NW_016107979v1    C 0 C 0
s canFam3.chr30                 42425 116 -  40214260 ctctattttctctttaatacatttaaagagaaatgtattatccccctggtttatc-tttgt-----ttttctttttgaaaa-tttcctcaaa---tatctattctatgttattcat-atttTTTTTC
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e aotNan1.NW_018511953v1       730873 1336 -   3745603 I
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e otoGar3.GL873530            6756882   0 -  36342412 C

a score=61193.000000
s hg38.chr15_KI270850v1_alt    183511 14 +    430880 tttttttttttttt
s panTro5.chr15              17993161  5 -  83230942 ---------ttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17219482  5 -  99763055 ---------ttttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       282119 14 +    378907 tttttttttttttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102137662 12 + 121039945 --tttttttttttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60347803  7 + 169600520 -------ttttttt
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5344256 14 -   6271500 tttttttttttttt
i macNem1.NW_012011056v1    I 9 C 0
s cerAty1.NW_012002657v1      1803524  7 -   1987038 -------ttttttt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21061693 14 -  24206276 tttttttttttttt
i chlSab2.chr29             I 9 C 0
s manLeu1.NW_012105520v1       295436 14 -   1458659 gttttttttttttt
i manLeu1.NW_012105520v1    I 22 C 0
s colAng1.NW_012118866v1       725447 14 -    764599 tttttttttttttt
i colAng1.NW_012118866v1    I 3 C 0
s calJac3.chrY                 218589 14 -   2853901 tttttttttttttt
i calJac3.chrY              I 1 C 0
s saiBol1.JH378276             500062 11 -   3282555 ---Gtttttttttt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       284371 11 -   1024465 ---ttttttttttt
i cebCap1.NW_016107979v1    C 0 C 0
s canFam3.chr30                 42541 14 -  40214260 TTTCTATTTCCTTT
i canFam3.chr30             C 0 I 14
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e aotNan1.NW_018511953v1       730873 1336 -   3745603 I
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e otoGar3.GL873530            6756882  0 -  36342412 C
e macFas5.chr7              107343661 100 - 171882078 M

a score=8281.000000
s hg38.chr15_KI270850v1_alt    183525 1 +    430880 t
s panTro5.chr15              17993166 1 -  83230942 t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17219487 1 -  99763055 t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       282133 1 +    378907 t
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102137674 1 + 121039945 t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60347810 1 + 169600520 t
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5344270 1 -   6271500 t
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1803531 1 -   1987038 t
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21061707 1 -  24206276 t
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       295450 1 -   1458659 t
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       725461 1 -    764599 t
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 218603 1 -   2853901 t
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             500073 1 -   3282555 t
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       284382 1 -   1024465 t
i cebCap1.NW_016107979v1    C 0 C 0
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e aotNan1.NW_018511953v1       730873 1336 -   3745603 I
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e canFam3.chr30                 42555 14 -  40214260 I
e otoGar3.GL873530            6756882 0 -  36342412 C
e macFas5.chr7              107343661 100 - 171882078 M

a score=984088.000000
s hg38.chr15_KI270850v1_alt    183526 129 +    430880 gagacggagtttcgctcttgttgcccaggatggagtgcgatggcgtgatcttggctcaccgcaacctttgcctcctggggtcaagcgattctcctgcctcagcctcctgagtagctgggattacaggca
s panTro5.chr15              17993167 129 -  83230942 gagacagagtttcacacttgttgcccaggatggagtgcaatggtgtgatcttggctcaccacaacctttgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17219488 129 -  99763055 gagacagagtttcacacttgttgcccaggatggagtgcaatggtgtgatcttggctcaccacaacctttgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       282134 129 +    378907 gagacggagtttcactcttgttgcccaggatggagtgcgatggcgtgatcttggctcaccgcaacctttgcctccagggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102137675 129 + 121039945 gagacagagtttcgctcttgttgcccaggatggagtgcaatggtgtgatctcggctcactgcaacctttgcctcctgggttcaggcgattctcctgcctcagcctcctgagtagctggaattacaggca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60347811 129 + 169600520 gagacggagtttcattcttgttgcccaggatggagtgcaatggcgtgatcttggctcaccacaacttttgcctcctgggttcaagcaattctcctgccttagcctcccaagtagctgggattacaggca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107343761 129 - 171882078 gagatggagtttcactcttgtttcccagcctggagtgcaatggcatgatcttggctcgccgcaatctttagctcctgggttcaagtgattctcctgcctcagcctcgtaagtagctgagattataggca
i macFas5.chr7              M 100 C 0
s macNem1.NW_012011056v1      5344271 129 -   6271500 gagacagagtttcgctcttgttgcccaggatggagtacaaaggcgtgatctcggcacaccgcaacctttgcctcctgggttcaagtgattcttctgcctcagcctcctgagtagctgtgattataggca
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1803532 129 -   1987038 gagatggagtttcattcttgttgcccaggatggaatgcaatggcatgatcttggctcaccgcaacttttgcctcctgggttcaagcaattctcctgtcttagcctcccaagtagctgggattacaggca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21061708 129 -  24206276 gagatggagtttcactcttgtttcccagcctggagtgcaatggcatgatcttggctcgccgcaatctttagctcctgggttcaagcgattctcctgcctcagcctcataagtagctgagattataggcg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       295451 129 -   1458659 gagatggagtttcactcttgtttcccagcctggagtgcaatggcatgatcttggctcgccgcaatctttagctcctgggttcaagtgattctcctgcctcagcctcataagtagctgagattataggca
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       725462 129 -    764599 tagatggagtttcactcttgtttcccagcctggagtgcaatggcatgatcttggcttgccgcaatctttagctcctgggttcaagcgattcttctgcctcagccttgtaagtagctgggattataggca
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 218604 127 -   2853901 gagatggagtcttgctc-tgtcacccaggctggagtacagtggtgtgatactggcttgctacaacttctccctcctgggttcaagcagttct-ctgcctcagcctcctgtgtagctgggattacaggca
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             500074 127 -   3282555 gagatggagtcttgctc-tgtcacccaggctggagtacagtggtgtgatactggcttactgcaccttctccctcctgggttcaagcaattct-ctgcctcagcctcgcgtgtagctgagattacagaca
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       284383 127 -   1024465 gagatggagtcttgctc-tgtcacccaggctggagtacagtggtgtgatattggcttactgcaacttctccctcctgggttcaagcagttct-ctgcctcagcctcccatgtagctgggattacaggca
i cebCap1.NW_016107979v1    C 0 I 164
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e aotNan1.NW_018511953v1       730873 1336 -   3745603 I
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e canFam3.chr30                 42555  14 -  40214260 I
e otoGar3.GL873530            6756882   0 -  36342412 C

a score=872721.000000
s hg38.chr15_KI270850v1_alt    183655 174 +    430880 tgtgccaccacacctggctaa--tttttgtatttttagtacagaaggggtttctccatgttggtcaggctggtttcgaattcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggattaaaggcgtgagccactgtg---cctggcc---TGTATTCTTTTTTTTTTTTA
s panTro5.chr15              17993296 171 -  83230942 tgtgccaccatccctggctaa--tttttgtatttttagtagagaaggggtttctccatgttggtcaggctggtttcgaattcctgacctcatgtgatctgtccaccttggcctcccaaagtgctgggattaaagacgtgagccactgtg---cctggcA---TGTATTCTTTGTTTTTT---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17219617 171 -  99763055 tgtgccaccatgcctggctaa--tttttgtatttttagtagagaaggggtttctccatgttggtcaggctggtttcgaattcctgacctcatgtgatctgtccaccttggcctcccaaagtgctgggattaaagacgtgagccactgtg---cctggcA---TGTATTCTTTGTTTTTT---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       282263 174 +    378907 tgtgccaccacgcctggctaa--tttttgtatttttagtagagaaggggtttctccatgttggtcaggctggtttcgaattcctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattaaaggcgtgagccactgtg---cctggcc---TGTGTTCTTTTTTTTTTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102137804 173 + 121039945 tgtgccaccacgcctggctaa--tttttgtatttttagtagagaaggggtttctccatgttggtgaggctggtttcgaattcctggcctcaggtgatccgccaacctcggcctcccaaagtgctgggattaaaggcgtgagccaccgtg---cctggcc---TGTATTCTTTTTTTTTTTT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60347940 169 + 169600520 tgtgccattatgcctggctaa--tttttgtatttttagtagagaagggttttctccatgttggttaggctcgtctcaaactcccaacctcaagtgatccatccaccttggcctcccaaagtgttgggattataggtgtgagctaccgcg---cccggcc---TGTGTTCT----TTTTTGA-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107343890 158 - 171882078 tgtgccaccaagcccggctaa--tttttgtattt--------------gtttctccatgttggtcaggctggtttcgaattcctgatctcaggggctctgcccaagtcagcctcccaaattgctgggattaaagtcatgaaccactgtg----ctggcc---TGTATTCTCTTTTTTTTTT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5344400 172 -   6271500 tgtgccaccatgcctggctaa--tttgtatacttttattagagacaggattgctccatgttggtcaggctggttttcaattcccaacctcaggtgatctgcccacctaggcctcccaaagtgctaggattaaaggcctgagccaccgtg---cccagtc---GGTATTCT-TTTTTTTTTT-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1803661 169 -   1987038 tgtgccactatacctggctaa--tttttgtatttttagtagagaaggggtttctccatgttggttaggctcgtctcaaactcccaacctcaagtgatccatccaccttagcctcccaaagtgttgggattataggtgtgagctaccgcg---ctcggcc---TGTGTTCT----TTTTTGA-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21061837 157 -  24206276 tgtgccaccaagcccggctaa--tttttgtattt--------------gtttctccatgttggtcaggctggttttgaattcctgacctcaggggctctgcccaagtcagcctcccaaattgctgggattaaagtcatgaaccactgtg----ctggcc---TGTATTCTCTTTTCTTT-A-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       295580 158 -   1458659 tgtgccaccacgcccggctaa--tttttgtattt--------------gtttctccatgttggtcaggctggtttcgaattcctgacctcaggggctctgcccaagtcagcctcccaaattgctgggattaaaatcatgaaccactgtg----ctggcc---TGTATTCTCTTTTTTTCAA-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       725591 156 -    764599 tgtgccaccaagcccggctaa--tttttgtattt--------------gtttctccatgttggtcaagctggtttcgaattcctgacctcaggggctatgcccaagtcagcctcccaaattgctgggattaaagtcatgaaccactgtg----ctggcc---TGTATTCTCTTTTTTTT---
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 218731 164 -   2853901 cccactaccatgcccagcttatttttttgtatttttagtagagacggggt---ttcatcttgtccaggctggtcttgagtgcctgagctt--gtgatccacccttctcggcctccc-aagtgctggtattacagtcatgaactaccacg---cccagccATTTGTATTCTTTT---------
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             500201 167 -   3282555 cccaccaccatgcccagctaatttttttgtatttttagtagagatggggt---tccatcttggccaggctggtcttgaacgcctgagctt--gtgatccacccttctcagcctccc-aagtgctggtattacaggcatgaaccaccatgcccCCCAGCCATTTGTAGTCTTTT---------
i saiBol1.JH378276          C 0 C 0
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e aotNan1.NW_018511953v1       730873 1336 -   3745603 I
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e canFam3.chr30                 42555  14 -  40214260 I
e cebCap1.NW_016107979v1       284510 164 -   1024465 I
e otoGar3.GL873530            6756882   0 -  36342412 C

a score=1047861.000000
s hg38.chr15_KI270850v1_alt    183829 128 +    430880 AATTCCCTTTTTTGTTCATTCATATTTGAGAGAGGTACTGAAAGAC----TGGGAggctgggtgtggtggctcacacctacaatctcagtgctttcggagattgacgtgggaggatcacttgagcccaggag
s panTro5.chr15              17993467 128 -  83230942 AATTCTCTTTTTTGTTCATTCATATTTGAGAGAGGTACTAAAAGAC----TGGGAggctgggagtggtggctcatacctacaatctcagtgctttgggagactgacgtgagaggatcacttgagcccaggag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17219788 128 -  99763055 AATTCTCTTTTTTGTTCATTCATATTTGAGAGAGGTACTAAAAGAC----TGGGAggctgggagtggtggctcatacctacaatctcagtgctttgggagactgacgtgagaggatcacttgagcccaggag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       282437 128 +    378907 AATTCCCTTTTTTGTTCATTCATATTTGAGAGAGGTACTGAAAGAC----TGGGAggctgggtgtggtggctcacacctacaatctcagtgctttcggagattgacgtgggaggatcacttgagcccaggag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102137977 128 + 121039945 TATTCCCTTTTTTATTCATTCATATTTGAGAGAGGTACTAAAAGAC----TGGGAggctgggtgtggtggctcacacctacaatctcagtgctttgggagactgacgtgggaggatcacttgagcccaggag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60348109 128 + 169600520 GATTCATTTTTTTGTTCATTCATATTTGGGAGAGGTACTAAAAGAC----TGGGAggctgggtgtggtggctcacacctacaatctcagtgctttgggagactgaggtgggaggatcacttgagcccaggag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107344048 128 - 171882078 AATTCCCCTTTTTGTTTATTCATATATGAGAGAAGTACTAAAAGAC----TGGGACgctgggtgtggtggctcacacctacaatctcagtgctttgggagactgatgtgggaggatcacttgagcccaggaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5344572 128 -   6271500 AATTCCTTTTTTTGTTCATTCATATCTGAGAGAGATACTAAAAGAC----TGGGAggctgggtgtgtcagctcacacctacaatctcagtactttgggagactgatgttggaggatcacttgagcccaggag
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1803830 128 -   1987038 GATTCATTTTTTTGTTCATTCATATTTGGGAGAGGTACTAAAAGAC----TGGGAggctgggtgtggtggctcacacctacaatctcagtgctttgggagactgaggtgggaggatcacttgagcccaggag
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21061994 128 -  24206276 AATTCCCCTTTTTGTTTATTCATATATGAGAGAAGTACTAAAAGAC----TGGGACgctgggtgtggtggctcacacctacaatctcagtgctttgggagactgatgtgggaggatcacttgagcccaggaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       295738 128 -   1458659 AATTCCCCTTTTTGTTTATTCATATATGAGAGAAGTACTAAAAGAC----TGGGATgctgggtgtggtggctcaaacctacaatctcagtgctttgggagactgatgtgggaggatcacttgagcccaggaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       725747 128 -    764599 AATTCCCCTTTTTGTTCATTCATATATGAGAGAAGTACTAAAAGAC----TGGGACgctgggtgtggtggcttacacctacaatctcagtgctttgggagactgatgtgggaggatcacttgagcccaggaa
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 218895 124 -   2853901 AATTCCCTTTTTTG----TTCATATTTGAGAGAAGTACTAAAAGACTGATTGGGAggctgggtgtggtggctcacatttataatctcagtgctttgggaggcgg----gggaggatcttttgagcctaggag
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             500368 128 -   3282555 AATTCCCTTTTTTG----TTCATATTTGAGAGAAGTACTAAAAGACTGATTGGGAggctgggtgtggtggctcacatttataatctcagtgctttgggaggcgggggtgggaggatcttttgagcccaggag
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       284674 128 -   1024465 AATTCCCTTTTTTG----TTCATATTTGAGAGAAGTACTAAAAGACTGATTGGGAggctgggtgtggtggctcacatttatgatctcagtgctttgggaggcgggagtgggaggatcttttcagcccaggag
i cebCap1.NW_016107979v1    I 164 I 1807
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e aotNan1.NW_018511953v1       730873 1336 -   3745603 I
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e canFam3.chr30                 42555  14 -  40214260 I
e otoGar3.GL873530            6756882   0 -  36342412 C

a score=1208543.000000
s hg38.chr15_KI270850v1_alt    183957 215 +    430880 ctcaag---agt--------agtttgggcaatattatgagaccccatctttacaaaa-aataaatt-------aaaaaaaaaaaagccaggtgtggtgacacccacctgtagtcccagctacttgggaggctgaggcaggaggatcgcttgagcccaggatgttgaggctaaagtgagttgtgatcatgctgctgcattcctgcattccagcctgggtgaaagagcaagatcct
s panTro5.chr15              17993595 206 -  83230942 ctcaag---act--------agtttgggcaatattgtgagaccccatcttta-aaaa-aataaatt---------aaaaaaaatagccaggtgtggtg------acctgtagccccaactatttgggaggctgaggcaggaggatcgcttgagcccaggatgttgaggctaaagtgagttgtgatgatgctgctgcattcctgcattccagcctgggtgaaggagcaagatcct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17219916 206 -  99763055 ctcaag---act--------agtttgggcaatattgtgagaccccatcttta-aaaa-aataaatt---------aaaaaaaatagccaggtgtggtg------acctgtagccccaactacttgggaggctgaggcaggaggatcgcttgagcccaggatgttgaggctaaagtgagttgtgatgatgctgctgcattcctgcattccagcctgggtgaaggagcaagatcct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       282565 216 +    378907 ctcaag---act--------agtttgggcaatattatgagaccccatctttacaaaa-aataaatt------aaaaaaaaaaaaagccaggcgtggtgacacccacctgtagtcccagctacttgggaggctgaggcaggaggatcacttgagcccaggatgttgaggctaaagtgagttgtgatcatgctgctgtattcctgcattccagcctgggtgaaagagcaagatcct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102138105 222 + 121039945 ctcaag---act--------agtttgggcaatactatgagaccccatctttacaata-aataaaaaaaaataaaaataaaaaaaagccaggtgtggtgacacccacctgtagtcctggctacttgggaggctgaggcaggaggattgcttgagcccaggatgttgaggctaaagtgagttgtgatcatgctgctgcattcctgcattccagcctgggtgaaagagcaagatcct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60348237 212 + 169600520 ctcacgaccacc--------agtttgggcaacatagtgagaccccatattaa-aaaa-aaaaaa------------aaaaaaaaagccaggtgtggtgacacccacctgtagtcccagctacttgggaggctgcgccaggaggattgcttgagcctgggaggttgaggctgcagtgagctgtgatcatcccactgcattcctgcattccagtgtgggtgaaagaacaagaccct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107344176 211 - 171882078 ctcaag---act--------aatttaggcaacatcatgagaccccatcttta-tgaa-aataaatt----------ttaaaaatagccaggtgtggtgacacccacctgtaggcccagctacttgggaggctgaggcaggaggatctcttgagcccaggatgttgaggctgaagtgagctgtgatcattccactgcattcctgcattccagcctaggtgaaagagcaagactct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5344700 212 -   6271500 ctcaag---act--------agtttgggcaatgttgtgagaccccatcttta-caaacaacaagtg----------aaaataatagccaggtgtggtgacacccacgtgtagccccagctacttgggaggctgaggcaggaggatcgcttgagcctgggatgttgaggctgaagtgagctgtgatcatcctgctgcattcctgcattccagcctgggtaaaagagcaagaccct
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1803958 207 -   1987038 ctcacg---acc--------agtttgggcaacatagtgagaccccatattaa-aaaa-aaaaaa--------------aaaaaaagccaggtgtggtgacacccacctgtagtcccagctacttgggaggctgcgccaggaggatcgcttgagcctgggaggttgaggctgcagtgagctgtgatcatcccactgcattcctgcattccagtgtgggtgaaagaacaagaccct
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21062122 211 -  24206276 ctcaag---act--------aatttaggcaacatcatgagaccccgtcttta-tgaa-aataaata----------aaaaaaatagccaggtgtggtgatacccacctataggcccagctacttgggaggctgaggcaggaggatctcttgagcccaggatgttgaggctgaagtgagctgtgatcattccactgcattcctgcatcccagcctaggtgaaagagcaagaccct
i chlSab2.chr29             C 0 I 349
s manLeu1.NW_012105520v1       295866 211 -   1458659 ctcaag---act--------aatttaggcaacatcatgagaccccatcttta-tgaa-aataaata----------aaaaaaatagccaggtgtggtgacacccacctgtaggcccagctacttgggaggctgaggcaggaggatctcttgagcccaggatgttgaggctgaagtgagctgtgatcattccactgcattcctgctttccagcctaggtgaaagagcaagaccct
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       725875 211 -    764599 ctcaag---act--------aatttaggcaacatcgtgagaccccatcttta-tgaa-aacaaata----------aaaaaaatagccaggtgtggtgacacccacctgtaggcccaactacttgggaggctgaggcaggaggatcgcttgagcccgggatgttgaggctgaagtgagctgtgatcatcccactgcattcctgcattccagcctgggtgaaagagcaagaccct
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 219019 194 -   2853901 tttaag---accagcctttaagttaagcctttgagttcagacctcatcttta-caaa-aaa----t----------aaaaaattagctggatatggtggcacctgcctgtagtcccagctactcaagaggctgaggcaggaggatcacttgagccagg-------------aggtgagctgtgatcatgccagtgtact--------gcagcctgggtgacagagtggaagact
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             500496 195 -   3282555 tttaag---acc-gcctttaagttaagcctttgagttaagaccccaccttta-caaa-aaaa--ta----------aaaaaattagctgggtatggtggcacctgtatgtagtcccagctactcaggaggctgaggcgggaggatcacttgagccagg-------------aggtgagctgtgatcatgccagtgtact--------gcagcctgggtgacagagtggaagact
i saiBol1.JH378276          C 0 C 0
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e aotNan1.NW_018511953v1       730873 1336 -   3745603 I
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e canFam3.chr30                 42555  14 -  40214260 I
e cebCap1.NW_016107979v1       284802 1807 -   1024465 I
e otoGar3.GL873530            6756882   0 -  36342412 C

a score=23737.000000
s hg38.chr15_KI270850v1_alt    184172 5 +    430880 ttctc
s panTro5.chr15              17993801 5 -  83230942 ttctc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17220122 5 -  99763055 ttctc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       282781 5 +    378907 ttctc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102138327 5 + 121039945 ttctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60348449 5 + 169600520 gtctc
i rheMac8.chr7              C 0 I 9
s macFas5.chr7              107344387 5 - 171882078 gcctc
i macFas5.chr7              C 0 I 7
s macNem1.NW_012011056v1      5344912 5 -   6271500 atctc
i macNem1.NW_012011056v1    C 0 I 9
s cerAty1.NW_012002657v1      1804165 5 -   1987038 gtctc
i cerAty1.NW_012002657v1    C 0 I 9
s manLeu1.NW_012105520v1       296077 5 -   1458659 gcctc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       726086 5 -    764599 gtttc
i colAng1.NW_012118866v1    C 0 I 14
s calJac3.chrY                 219213 5 -   2853901 gtctc
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             500691 5 -   3282555 gtctc
i saiBol1.JH378276          C 0 C 0
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e aotNan1.NW_018511953v1       730873 1336 -   3745603 I
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e canFam3.chr30                 42555 14 -  40214260 I
e cebCap1.NW_016107979v1       284802 1807 -   1024465 I
e otoGar3.GL873530            6756882 0 -  36342412 C
e chlSab2.chr29              21062333 349 -  24206276 I

a score=30989.000000
s hg38.chr15_KI270850v1_alt    184177 32 +    430880 aaataaataaata---aa--taaataaaataaataca
s panTro5.chr15              17993806 30 -  83230942 aaataaataaata---aa--taaat-aaataaata-a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17220127 26 -  99763055 aaataaataaata---aa--t-----aaataaata-a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       282786 28 +    378907 aaataaataaata---aa--ta----aaataaaTACA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102138332 20 + 121039945 aaataaata-----------------aaataaataca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60348463 34 + 169600520 ataaaataaaata---aaataaaataaaatagataaa
i rheMac8.chr7              I 9 C 0
s macFas5.chr7              107344399 30 - 171882078 aaataaataaata---aa--taaataaaat--acaaa
i macFas5.chr7              I 7 C 0
s macNem1.NW_012011056v1      5344926 32 -   6271500 aaatatataaatt---aa--ttaattaaataaataag
i macNem1.NW_012011056v1    I 9 C 0
s cerAty1.NW_012002657v1      1804179 30 -   1987038 ataaaataaaata---aa--ataa--aaatagataaa
i cerAty1.NW_012002657v1    I 9 C 0
s chlSab2.chr29              21062682 32 -  24206276 aaaTaaataaata---aa--ataaaaaaaaaaataca
i chlSab2.chr29             I 349 C 0
s manLeu1.NW_012105520v1       296082 34 -   1458659 -aataaataaataaagaa--ataaataaaaaaataca
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       726105 32 -    764599 aaataaataaata---aa--taaaataaataaataca
i colAng1.NW_012118866v1    I 14 C 0
s calJac3.chrY                 219218 11 -   2853901 --------------------------aaaaaaaaaaa
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             500696 11 -   3282555 --------------------------caatcaatcaa
i saiBol1.JH378276          C 0 C 0
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e aotNan1.NW_018511953v1       730873 1336 -   3745603 I
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e canFam3.chr30                 42555 14 -  40214260 I
e cebCap1.NW_016107979v1       284802 1807 -   1024465 I
e otoGar3.GL873530            6756882  0 -  36342412 C

a score=-237.000000
s hg38.chr15_KI270850v1_alt    184209 11 +    430880 aa--taa-----aaaaat
s panTro5.chr15              17993836 16 -  83230942 aa--taaaaattaaaaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17220153 16 -  99763055 aa--taaaaattaaaaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       282814 16 +    378907 AA--TAAAAAATAAAAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102138352 16 + 121039945 aa--taaaaaaTAAAAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60348497 14 + 169600520 aa--taaaaAATAAA--T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107344429 14 - 171882078 ta--aaaaataaaAA--C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5344958 16 -   6271500 tactaataaaaaaat--t
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1804209 14 -   1987038 aa--taaaaaataaa--T
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21062714 16 -  24206276 aa--taaaaaataaaaac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       296116 13 -   1458659 aa--taaaaaataaa---
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       726137 16 -    764599 aa--taaaaaataaaAAC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 219229  9 -   2853901 aa--aaaaaaT-------
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             500707 16 -   3282555 tc--aatcaatcaatcaa
i saiBol1.JH378276          C 0 C 0
s canFam3.chr30                 42569 11 -  40214260 ag--tgaggtact-----
i canFam3.chr30             I 14 C 0
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e aotNan1.NW_018511953v1       730873 1336 -   3745603 I
e mm10.chr9                  55169753 1788 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cebCap1.NW_016107979v1       284802 1807 -   1024465 I
e otoGar3.GL873530            6756882  0 -  36342412 C

a score=536520.000000
s hg38.chr15_KI270850v1_alt    184220 67 +    430880 aaaGAATTGATTGGGAGTTCTGCATGGCGAAGACTTGGCAACTGATAGCTTTTAGGGGGGAATGTAT
s panTro5.chr15              17993852 67 -  83230942 aaaaaaTTGATTGGGAGTTCTTCATGGCCAAGACTTGGCAACTGATAGCTTTTAGAGGGGAACATAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17220169 67 -  99763055 aaaaaaTTGATTGGGAGTTCTTCATGGCCAAGACTTGGCAACTGATAGCTTTTAGAGGGGAACATAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       282830 67 +    378907 AAAAAATTGATTGGGAGTTCTGCATGGCCAAGACTTGGCAACTGATAGCTTTTAGGGGGAAATGTAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102138368 67 + 121039945 AAAAAATTGATTGGGAGTTCTTCATGGCCAAGACTTGGCAACTGATAGCTTTTAGGGGGGAATGTAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60348511 66 + 169600520 TAATAATTGATTGGGAGTTCTTCATGGCCAATACTTGGCAACTGATAGCTTTTAG-GGGGAATGTAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107344443 66 - 171882078 AGAAAATCGATTGGGAGTTCTTCATGGCCAAGACTTGGCAACTGATAGCTTTTAG-GGGGAATGTAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5344974 66 -   6271500 aaaaaatTGATTGGGAGTTCTTCATGGCCAAGATTTGGCAACTGATAGCTTTTAG-GGGGAATATAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1804223 66 -   1987038 TAATAATTGATTGGGAGTTCTTCATGGCCAATACTTGGCAACTGATAGCTTTTAG-GGGGAATGTAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21062730 66 -  24206276 aaaaaaTTGATTGGGAGTTCTTCATGGCCACGACTTGGCAACCGATAGCTTTTAG-GGGGAATGTAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       296129 66 -   1458659 aaaaaaTTGATTGGGAGTTCTTCATGGCCAAGACTTGGCAACTGGTAGCTTTTAG-GGGGAATGTAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       726153 56 -    764599 AAAAAATTGATTGGGAATTCTTC-----------TTGGCAACTGATAGCTTTTAGAGGGGAATGTAT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 219238 63 -   2853901 ---AGACTGATTGGGAGTTCTCTGTGGCCAAGACTTGTCAACTGATAGCTTTTAG-GGGGAATTTAG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             500723 66 -   3282555 tcaaGACTGATTGGGAGTTCTCTGTGGCCAAGACTTGTCAACTGATAGCTTTTAG-GGGGAATTTAG
i saiBol1.JH378276          C 0 C 0
s mm10.chr9                  55171541 65 + 124595110 AAATAAATGATGTGGAGTTCCTTGTAGCCAACACTTGTCACCTGATAGC-TTTAG-GGGGAGTTTAT
i mm10.chr9                 I 1788 C 0
s canFam3.chr30                 42580 66 -  40214260 gaaaagataattgagagttctttgtggccaagacttgtcaactAATAGTGTTTAG-GAGGAATTTAA
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e aotNan1.NW_018511953v1       730873 1336 -   3745603 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cebCap1.NW_016107979v1       284802 1807 -   1024465 I
e otoGar3.GL873530            6756882  0 -  36342412 C

a score=513414.000000
s hg38.chr15_KI270850v1_alt    184287 64 +    430880 GCTGATTCCTAATTGT--------TATCCTCTACCCCTCTATCT-------TATCTCCCAGTGCAATCATAAATGATGG
s panTro5.chr15              17993919 64 -  83230942 GCTGATTCCTAATTGT--------CATCCTCTACCCCTCTATCT-------TATCTCCCGGTGCAATCATAAATGATGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17220236 64 -  99763055 GCTGATTCCTAATTGT--------CATCCTCTACCCCTCTATCT-------TATCTCCCGGTGCAATCATAAATGATGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       282897 64 +    378907 GCTGATTCCTAATTGT--------TATCCGCTACCCCTCTATCT-------TATCTCCCGGTGCAATCATAAATGATGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102138435 64 + 121039945 GCTGATTCCTAATTGC--------TATCCTCTACCCCTCTATCT-------TATCTCCCAGTGCAATCATAAATGATGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60348577 64 + 169600520 TCTGATTCCTAATTGC--------TATCCGCTACCTGTCTATCT-------TATCTCCCGGTGCAGTCATAAATGATGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107344509 64 - 171882078 GCCGATTCCTAATTGT--------TATCCTCTACCCCTCTATCT-------TATCTCCCGTTGCAATCATAAATGATGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5345040 64 -   6271500 GCTGATTCCTGATTGT--------TTTCCTCTAACGCTCTTTCT-------TATCTCCCGGTGCAATCGTAAGTGATGG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1804289 64 -   1987038 TCTGATTCCTAATTGC--------TATCCGCTACCTGTCTATCT-------TATCTCCCGGTGCAGTCATAAATGATGG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21062796 64 -  24206276 GCTGATTCCCAATTGT--------TATCCTCTAACCCTCTATCT-------TATTTCCTGGTGCAATCATAAATGATGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       296195 64 -   1458659 GCTGATTCCTAATTGT--------TATCCTCTAACCCTCTATCT-------TATTTCCTGGTGCAATCATAAATGATGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       726209 64 -    764599 GCTGATTCCTAATTGT--------TATCCTCTAACCCTCTATCT-------TATCTCCTGGTGCAATCATAAATGATGG
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 219301 76 -   2853901 GCTGATTCCCAATTGTTATTCCCCTATTCCCCACCCCTCTATCTTATCTCCTATCTCCTGGTGTAGTCGTAAATGT---
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             500789 68 -   3282555 GCTGATTCCCAATTGT--------TATTCCCCACCCGTCTATCTTATTTCCTATCTCCTGGTGCAGTCATAAATGT---
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       732209 68 -   3745603 GCTGATTCCCAATTGT--------TATTCCCCACCCCTCTATCTTATCTCCTATCTCCTGGTGCAGTCATAAATGT---
i aotNan1.NW_018511953v1    I 1336 C 0
s mm10.chr9                  55171606 60 + 124595110 GTTGATTCCCAACCAC--------TCTTCCC---CCTACTTTTC-------CACTTGTTAGTACAGG-GTAAAAGATGG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 42646 59 -  40214260 GCTGACTTCCAGCTGC--------TGTCCCCTACCCCCCTGTTC-------TGT-----GGTGTAATAATAAATGGAGG
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cebCap1.NW_016107979v1       284802 1807 -   1024465 I
e otoGar3.GL873530            6756882  0 -  36342412 C

a score=35513.000000
s hg38.chr15_KI270850v1_alt    184351 3 +    430880 CTG
s panTro5.chr15              17993983 3 -  83230942 CTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17220300 3 -  99763055 CTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       282961 3 +    378907 CTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102138499 3 + 121039945 CTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60348641 3 + 169600520 CTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107344573 3 - 171882078 CTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5345104 3 -   6271500 CTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1804353 3 -   1987038 CTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21062860 3 -  24206276 CTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       296259 3 -   1458659 CTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       726273 3 -    764599 CTG
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 219377 3 -   2853901 CTG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             500857 3 -   3282555 CTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       286609 3 -   1024465 CTG
i cebCap1.NW_016107979v1    I 1807 C 0
s aotNan1.NW_018511953v1       732277 3 -   3745603 CTG
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  55171666 2 + 124595110 CT-
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 42705 3 -  40214260 CTG
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e otoGar3.GL873530            6756882 0 -  36342412 C

a score=15300.000000
s hg38.chr15_KI270850v1_alt    184354 1 +    430880 G
s panTro5.chr15              17993986 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17220303 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       282964 1 +    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102138502 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60348644 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107344576 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5345107 1 -   6271500 G
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1804356 1 -   1987038 G
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21062863 1 -  24206276 G
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       296262 1 -   1458659 G
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       726276 1 -    764599 G
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 219380 1 -   2853901 G
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             500860 1 -   3282555 G
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       286612 1 -   1024465 G
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       732280 1 -   3745603 G
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6756882 1 -  36342412 G
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 42708 1 -  40214260 G
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e mm10.chr9                  55171668 0 + 124595110 C
e dasNov3.JH569975              26210 12202 -   2180720 I

a score=210796.000000
s hg38.chr15_KI270850v1_alt    184355 34 +    430880 AACTACTCCA-TTCCTCTGGAGGTGAAATCTACAT--
s panTro5.chr15              17993987 34 -  83230942 AACTACTCCA-TTCctctggaggtgaaatctacat--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17220304 34 -  99763055 AACTACTCCA-TTCctctggaggtgaaatctacat--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       282965 34 +    378907 AACTACTCCA-TTCCTCTGGAGGTGAAATCTACAT--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102138503 34 + 121039945 AACTACTCCA-TTCCTCTGGAGGTGAAATCTACAT--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60348645 34 + 169600520 AACTACTCCA-TTCCTCTGGAGGTGAAATCTACAT--
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5345108 34 -   6271500 AACTACTCCA-TTCctctggagatgaaatctgcat--
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1804357 34 -   1987038 AACTACTCCA-TTCctctggaggtgaaatctacat--
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 219381 34 -   2853901 AACTACTCCA-TTCCTCTGGAGATGAAACCTGTGT--
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             500861 34 -   3282555 AGctacttca-ttcctctggagatgaaacctgtgt--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       286613 34 -   1024465 AACTACTCCA-TTCCTCTGGAGATGAAACCTATGT--
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       732281 35 -   3745603 AACTACTCCATTTCCTCTGGAGATGAAACCTATGT--
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6756883 34 -  36342412 AGCTATTGTG-TTTCTCTGGTGATGAAATCTTTTG--
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55171668 24 + 124595110 ------CCAG-TTTCTCTGCAGATGACATTT------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 42709 35 -  40214260 AACTACTTGG-TTTCTTTGGACACGACATTT-TATAA
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 916420 210 - 119751181 I
e proCoq1.NW_012149419v1       640010 225 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       726277  0 -    764599 C
e manLeu1.NW_012105520v1       296263  0 -   1458659 C
e chlSab2.chr29              21062864  0 -  24206276 C
e macFas5.chr7              107344577  0 - 171882078 C

a score=895176.000000
s hg38.chr15_KI270850v1_alt    184389 106 +    430880 TCTC--TTGTCTGAGGTAGATATG--TTTGCTTGGGTTCTGCTTAAGGAGATGGAGGAGAGCAGTGTGTTTCAGGGCCTGGAAAAGGTGTTCTCTATATAGGCTTTTGGT
s panTro5.chr15              17994021 104 -  83230942 tctc--ttgcctgaggtggatatg--tttgcttggattctgcttaaggagatggaggagagcagtgtgtttcagggcctggaaaa--tgttctctatataggcttttggt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17220338 104 -  99763055 tctc--ttgcctgaggtggatgtg--tttgcttggattctgcttaaggagatggaggagagcagtgtgtttcagggcctggaaaa--tgttctctatataggcttttggt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       282999 106 +    378907 TCTC--TTGTCTGAGGTAGGTATG--TTTGCTTGGGTTCTGCTTAAGGAGATGGAGGAGAGCAGTGTGTTTCAGGGCCTGGAAAATGTGTTCTCTATATAGGCTTTTGGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102138537 105 + 121039945 TCTC--TTGTCTGAGGTAGATCTG--TTTGCTTGGGTTCTGCTTAAGGAGATGGAGGAGAGCAGTGTGTTTCAGGG-CTGGAAAATGTGTCCTCTATataggcttttggc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60348679 105 + 169600520 TCTC--TTATCTGAGGTAGATAAG--TTTGCTTGGGTTCTGCTTAAGGAGAtgggggagagca-tgtgtttcagggcctggaaaatgtgttctctatatagacttctggt
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5345142 106 -   6271500 tctc--ttgtctgaggtagatatg--tttgcttgggttctgcttaaggagatgggggagaacagtgcatttcagtgcctgaaaaatgtgttctctatataggcttttggt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1804391 106 -   1987038 tctc--ttgtctgaggtagataag--tttgcttgggttctgcttaaggagatgggggagagcagtgtgtttcagggcctggaaaatgtgttctctatataggcttctggt
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 219415 108 -   2853901 TCTC--TTGCCTGAGGTAGATACATGTTTGCTTGGGTTGTGCTTAAGGAGATGTGGGAGAGCAGTGTGTTTCAGGGCCTGGAAAATGTGTTCTGTATATAGGCTTTTGGT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             500895 104 -   3282555 tctc--tcgcctgaggtagataca--tttgcttgggttgtgcttaaggagatgtgggagagcagtgtgtttcagggcctggaaaa--tgttctgtatataggtttttggt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       286647 106 -   1024465 TCTC--TTGCCTGAGGTAGATACGTGTTTGCTTGGGTTGTGCTTAAGGAGATGTGGGAGAGCAGTGTGTTTCAGGGCCTGGAAAA--TGTTCGGTATATAGGCTTTCGGT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       732316 108 -   3745603 TCTCTTTTGCCTGAGGT-GGTACATGTTTGCTT-GGTTGTGCTTAAGGAGATGTGGGAGAGCAGTGTGTTTCAGGGCCTGGAAAATGTGTTCTCTATATAGGCTTTTGGT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 916630 106 - 119751181 TCTC--TTGCCTAAGGTAGATGTG--TCTGTCTGGATTCTGCTTAAGGAGATGTGGGAGAGCAATGTGTTTTAGGGCCTGGGAAATGTGTTCTGTCTACAGGCTTTTGGT
i micMur3.chr3              I 210 I 441
s proCoq1.NW_012149419v1       640235 106 -   2566024 tctc--ttgcctaaggcagatgtg--tctgtctggattctgcttaaggagatgtgggagagcagtatgttttaggggctggaaaatgtgttctatctgcaggcttttggt
i proCoq1.NW_012149419v1    I 225 C 0
s otoGar3.GL873530            6756918 105 -  36342412 TCTC--TTGCCAAAGGTAGATTTG--TCTGTCTGTGTTCTGTTTAAGGAGATGGGGGGAAACAGTGTGTTTTAAGGGCTAGAAAATGTGTTCTGTCTGCAGGC-TTTGGT
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  55171692  95 + 124595110 -------TGTCTGA--CAGATA----ATCTCCTGGGTTCTACTTAAGGAGGTG-GGGAATGCAGAGCATTTGAGGG-CTGTGTGGTGTGTGTTGCAGGCAGGCTTTTGGT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 42744 103 -  40214260 TCTC--CTGTTTGAGGTAAATATG--TCTGCCTAGGTGCTGTGTAAGGACACAGGGGAAAGCATTGTGTTTCAGGGACTGGACA---TGTTCTGTGTTTTGGCTTTTGGT
i canFam3.chr30             C 0 C 0
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       726277   0 -    764599 C
e manLeu1.NW_012105520v1       296263   0 -   1458659 C
e chlSab2.chr29              21062864   0 -  24206276 C
e macFas5.chr7              107344577   0 - 171882078 C

a score=652223.000000
s hg38.chr15_KI270850v1_alt    184495  99 +    430880 TAA--tctct-gttttcagtcttgcctgtcagtcccactctcgggggtacctggtg-tc-t--gagtctagaacctt----tccaggttgctgtgggacaaattagcttc
s panTro5.chr15              17994125  99 -  83230942 tga--tctct-gttttcagtcttgcctatcagtcccactctcgggggtacctggtg-tc-t--gagtctagaacctt----tccaggttgctgtgggacaaattagcttc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17220442  99 -  99763055 tga--tctct-gttttcagtcttgcctatcagtcccactctcgggggtacctggtg-tc-t--gagtctagaacctt----tccaggttgctgtgggacaaattagcttc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       283105  99 +    378907 TAA--tctct-gttttcagtcttgcctatcagtcccactctcgggggtacctggtg-tc-t--gagtctagaacctt----tccaggttgctgtgggacaaattagcttc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102138642  99 + 121039945 taa--tctcc-gttttcagtcttgcctgtcagtcccactctcgggggtccctggtg-tc-t--gagtctagaacctt----tccaggttgctgtgggacaaattagcttc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60348784  99 + 169600520 taa--tgttt-gttttcagtcttgcctatcagtcccactctcaggggtacctggtg-tc-t--gagtctagaatctt----tccaggttgctgtgggaccaattagcctc
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5345248  99 -   6271500 taa--tctct-gttttcagtcttgcctgtcagtcccaccctcggggatacctggtg-tc-t--gagtcgagaacctt----tctaggttgctgtgggacaaattagcttc
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1804497  99 -   1987038 taa--tgttt-gttttcagtcttgcctatcagtcccactctcgggggtacctggtg-tc-t--gagtctagaatctt----tccaggttgctgtgggacaaattagcctc
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 219523 100 -   2853901 TAA--TCTCC-ATTTTCAGTCTTGCCTATCGATCCCATTCTCGGGGGTACCTGGTGTCT-T--GAGTCTAGAGCCTC----TCCAGGGTGTTGTGAGACAAATTTGTTTC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             500999  99 -   3282555 taa--gctct-gttttcagtcttgcctgtcggtcccattctcgggggtacctggtg-cc-t--gagtctagagcctc----tccagggtgctgtgagacaaatttgcttc
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       286753  99 -   1024465 TAA--TCTCT-GTTTTCAGTCTTGCCTATCAGTCCCATTCTCGGGGGTACCTGCTG-TC-T--GAGTCTAGAGCCTC----TCCGGGGTGCTGTGAGACAAATTTGCTTC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       732424  91 -   3745603 TAA--TCTCT-GTTTTCAGTCTTGCTTATCGGTCCCATTCTCAGGGGT---------AC-T--AAGTCTAGAGCCTC----TCCAGGGTGCTGTGAGACAAATTTGCTTC
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       640341 101 -   2566024 taatctctct-gttctcagtgctacctgtcactcccactctccagtgtacctggtg-tc-t--cagtctagagcccc----tccggggtgccgaggggcagcttagcctc
i proCoq1.NW_012149419v1    C 0 I 16
s otoGar3.GL873530            6757023  86 -  36342412 TAA----Tct-gttttcagtcctgcctctcagtcccactctcca-tgtacctggtg-tc-t--cagcctggatcctc----tccgggggtccag----------agcctc
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55171787 101 + 124595110 TAG--TCTGTAGGTTTCCATCCTGCCTGCTGCTCCTGTTGC--AGTGTATTTGGTG-TCTT--GAGTCTGGAGCCTCTGAATTGAGGGTGCTTTTTGCAGATCTCTCC--
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 42847  83 -  40214260 ---------------------TGATCTGTAATTCCTGCTGTCTCGTGTACCCAGTG-TC-TTGGAGTCTAGAGGCTC----TCTAGGGTGCTGTGGGGCAGATTTGCCTC
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 916736 441 - 119751181 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       726277   0 -    764599 C
e manLeu1.NW_012105520v1       296263   0 -   1458659 C
e chlSab2.chr29              21062864   0 -  24206276 C
e macFas5.chr7              107344577   0 - 171882078 C

a score=109946.000000
s hg38.chr15_KI270850v1_alt    184594 19 +    430880 cttgtttttggtatccccc
s panTro5.chr15              17994224 19 -  83230942 cttcttattggtatccccc
i panTro5.chr15             C 0 I 1
s panPan2.chr15              17220541 19 -  99763055 cttcttattggtatccccc
i panPan2.chr15             C 0 I 1
s gorGor5.CYUI01015946v1       283204 19 +    378907 cttgtttttggtatccccc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102138741 19 + 121039945 cttgttattggtatccccc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60348883 19 + 169600520 cttgtaattggtatccccc
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5345347 19 -   6271500 cttgttatcggtatccccc
i macNem1.NW_012011056v1    C 0 I 1
s cerAty1.NW_012002657v1      1804596 19 -   1987038 cttgtaattggtatccccc
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 219623 18 -   2853901 CTTGTTATTGGTA-CCCCC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             501098 19 -   3282555 cttgttactgatatccccc
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       286852 19 -   1024465 CTTGTTATTGGTATCCCCC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       732515 19 -   3745603 CTTGTTATTGGTATCCCCC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6757109 19 -  36342412 cttattctcagtatccctc
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55171888 19 + 124595110 TTGGTCACTGCTGTCTCCT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 42930 11 -  40214260 -------CTGTAATCCCT-
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 916736 441 - 119751181 I
e proCoq1.NW_012149419v1       640442 16 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       726277  0 -    764599 C
e manLeu1.NW_012105520v1       296263  0 -   1458659 C
e chlSab2.chr29              21062864  0 -  24206276 C
e macFas5.chr7              107344577  0 - 171882078 C

a score=49797.000000
s hg38.chr15_KI270850v1_alt    184613 4 +    430880 aacc
s panTro5.chr15              17994244 4 -  83230942 gacc
i panTro5.chr15             I 1 C 0
s panPan2.chr15              17220561 4 -  99763055 gacc
i panPan2.chr15             I 1 C 0
s gorGor5.CYUI01015946v1       283223 4 +    378907 aACC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102138760 4 + 121039945 aacc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60348902 4 + 169600520 gacc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107344577 4 - 171882078 AACC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5345367 4 -   6271500 gacc
i macNem1.NW_012011056v1    I 1 C 0
s cerAty1.NW_012002657v1      1804615 4 -   1987038 gacc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21062864 4 -  24206276 AACC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       296263 4 -   1458659 AACC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       726277 4 -    764599 AACC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 219641 4 -   2853901 AACC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             501117 4 -   3282555 aacc
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       286871 4 -   1024465 AACC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       732534 4 -   3745603 AACC
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  55171907 4 + 124595110 GACC
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 42941 4 -  40214260 AACC
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 916736 441 - 119751181 I
e proCoq1.NW_012149419v1       640442 16 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e otoGar3.GL873530            6757128 0 -  36342412 C

a score=3591920.000000
s hg38.chr15_KI270850v1_alt    184617 338 +    430880 tccacttttgtttgc-ttgctccattaattaaccattttccatttactgtcattttctaatggaggtgaattctctt--ctgtgggtaaccccatttc---ttttttttgtaattgtttgtttatatattgtttattcttc---actgtatttctagtggagcctcaggacaaagagcagatggtggaa-----atatgtgttc------aGTGTTCAG----TTTTTTTCTGTAAGACATCTG---CAACTTGTGTTTTTCACTG---AATA-TCACGTGGACTTAATGCATATAGAGCTACCTTGTTTTTCTTGATTGTGCCT---ACAATTCTATGGAGA---AATATAAT-----TTGTGAATTACCTGATGAAAT
s panTro5.chr15              17994248 336 -  83230942 tccacttttgtttgc-tggctccattaattaaccattttccatttactgtcattttctaatggaggtgaattctctt--ctgtgggtaaccccatttc---ttttttttgtaattgtgtgtttatataatgtttattcttc---actgtatttctagtggagcctcaggacaaagagcagatggtggaa-----atatgtgttc------agtGTTCAGT---TTTTTTTCTGTAAGA---CTG---CAACTTGTGTTTTTCACTG---AATA-TCACATGGACCTAATGCATATAGAGCTACCTTGTTTTTCATGATTGTGCCT---ACAATTCTATGGTGA---AATATAAT-----TTgtgaattacctgatgagat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17220565 336 -  99763055 tccacttttgtttgc-tggctccattaattaaccattttccatttactgtcattttctaatggaggtgaattctctt--ctgtgggtaaccccatttc---ttttttttgtaattgtgtgtttatataatgtttattcttc---actgtatttctagtggagcctcaggacaaagagcagatggtggaa-----atatgtgttc------agtGTTCAGT---TTTTTTTCTGTAAGA---CTG---CAACTTGTGTTTTTCACTG---AATA-TCACATGGACTTAATGCATATAGAGCTACCTTGTTTTTCATGATTGTGCCT---ACAATTCTATGGTGA---AATATAAT-----TTGTGAATTACCTGATGAGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       283227 321 +    378907 TCCACTTTTGTTTGC-TTGCTCCATTAATTAAC-----------------CATTTTCTAATGGAGGTGAATTCTCTT--CTGTGGGTAACCCCATTTC---TTTTTTTTGTAATTGTGTGTTTATATATTGTTTATTCTTC---ACTGTATTTCTAGTGGAGCCTCAGGACAAAGAGCAGATGGTGGAA-----ATATGTGTTC------AGTGTTCAG----TTTTTTTCTGTAAGACATCTG---CAACTTGTGTTTTTCACTG---AATA-TCACGTGGACTTAATGCATATAGAGCTACCTTGTTTTTCATGATTGTGCCT---ACAATTCTATGGAGA---AATATAAT-----TTGTGAATTACCTGATGAAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102138764 338 + 121039945 tccacttttgtttgc-ttgctccattaattaaccattttccatttactgtcattttctaatggaagtaaattctctt--ctgttggtaaccccatttc---ttttttttgtaattgtgtgtttatataatgtttattcttc---actgtatttctagcagagcctcaggaaaaagagcagatggtggaa-----atatgtgttc------agtGTTCAG----TTTTTTTCTGTAAGACATCTG---CAACTTGTATTTTTCACTG---AATA-TCACATGGACTTAATGCATATAGAGCTACCTTGCTTTTCATGATTGTGCCT---ACAATTCCATGGAGA---AATATAAT-----TTgtgaattacctgatgaaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60348906 340 + 169600520 tccacctttgtttgctttgcttcattaattaaccattttccatttactgtcattgtctaatgtaggtgaattctctt--ctgctggtaaccccattcc--tttttttttgtaattgtgtgtttatataatgtttattcttc---actgtatttctagtggagactcgggacaaagagtagatgGTGGAA-----ATATGTGTTC------AGTGTTCAG----TTTTTTTCTGTATGACATCTG---CAACTTGTGTTTGTCATTG---AATA-TCACTTGGACTTAATGCTTATAGAGCTACCTTGTTTTTCATGATTGTGCCT---ACAATTCTATGGAGA---AATATAAT-----TTGTGAATTACCTGATGAAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107344581 334 - 171882078 TCCACTTTTGTTTGCTTTGCTCCATTAATTAACCATTTTCCATTTACTGTCATTGTCTAATGAAGGTGAATTCTCTT--CTGTTGGTAATCCTATTTC----TTTTTTTGTAATTGTGTGTTTAT---ATGTTTCTTCTTC---ACTGTATTTCTAGTGGAGCCTTAGGACAAAGAGCAGATGGTGGAA-----ATATGTGTTC------AGTGTTCAG-----TTTTTTCTGTAAGACTTCTG---CAACTTGTGTTTTTCACTG---AATA-GCACACGGACTTAATGCATATAGAGCTACCTTGTTTTTCCTGATTGTGCCT---ACAATTCTATGGAGA---AATATAAT-----TTGTGAATTACCTGATGAAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5345371 338 -   6271500 tccacttttgtttgctttgctcgactaattaaccattttccatttactgtcattgtctaatggaggtgaattctctt--ctgttggtaatcccatttc----tttttttgtaattgtgtgtttatataatgtttcttcttc---actgtatttctagaggagcctcaggacaaagagcagatggtggaa-----atatgtgttc------agtGTTCAG----TTTTTTTCTGTAAGACATTTG---CAAATTGTGTTTTTCACGA---AATA-TCACAGGGACTTAATGCATATAGAGCTACCTTGTATTTCATGATTGTGCCT---ACAATTCTATGGAGA---AATATAAT-----TTGTGAATTACCTGATGAAAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1804619 340 -   1987038 tctacctttgtttgctttgcttcattaattaaccattttccatttactgtcattgtctaatgtaggtgaattctctt--ctgttggtaaccccattcc--tttttttttgtaattgtgtgtttatataatgtttattcttc---actgtatttctagtggagactcaggacaaagagtagatagtggaa-----atacgtgttc------agtGTTCAG----TTTTTTTCTGTATGACATCTG---CAACTTGTGTTTGTCATTG---AATA-TCACTTGGACTTAATGCTTATAGAGCTACCTTGTTTTTCATGATTGTGCCT---ACAATTCTATGGAGA---AATATAAT-----TTGTGAATTACCTGATGAAAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21062868 334 -  24206276 TCCACTTTTGTTTGCTTTGCTCCATTAATTAACCATTTTCCATTTACTGTCATTGTCTAATGAAGGTGAATTCTCTT--CTGTTGGTAATCCTATTTC----TTTTTTTGTAATTGTGTGTTTAT---ATGTTTCTTCTTC---ACTGTATTTCTAGTGGAGCCTTAGGACAAAGAGCAGATGGTGGAA-----ATACGTGTTC------AGTGTTCAG-----TTTTTTCTGTAAGACTTCTG---CAACTTGTGTTTTTCACTG---AATA-GCACACGGACTTAATGCATATAGAGCTACCTTGTTTTTCCTGATTGTGCCT---ACAATTCTATGGAGA---AATATAAT-----TTGTGAATTACCTGATGAAAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       296267 334 -   1458659 TCCACTTTTGTTTGCTTTGCTCCATTAATTAACCATTTTCCATTTACTGTCATTGTCTAATGAAGGTGAATTCTCTT--CTGTTGGTAATCCTATTTC----TTTTTTTGTAATTGTGTGTTTAT---ATGTTTCTTCTTC---ATTGTATTTCTAGTGGAGCCTTAGGACAAAGAGCAGATGGCGGAA-----ATATGTGTTC------AGTGTTCAG-----TTTTTTCTGTAAGACTTCTG---CAACTTGTGTTTTTCACTG---AATA-GCACACGGACTTAATGCATATAGAGCTACCTTGTTTTTCCTGATTGTGCCT---ACAATTCTATGGAGA---AATATAAT-----TTGTGAATTACCTGATGAAAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       726281 334 -    764599 TCCACTTTTGTTTGCTTTGCTCCATTAATTAACCATTTTCCATTTACTGTCATTGTCTAAATAAGGTGAATTCTCTT--CTGTTGGTAATCCTATTTC----TTTTTTTGTAATTGTGTGTTTAT---ATGTTTCTTCTTC---ACTGTATTTCTAGTGGAGTCTTAGGACAAAGAGCAGATGGTGTAA-----ATATGTGTTC------AGTGTTCAG-----TTTTTTCTGTAAGACTTCTG---CAACTTGTGTTTTTCACTG---AATA-TCACAGGGACTTAATGCATATAGAGCTACCTTGTTTTTCATGATTGTGCCT---ACAATTCTGTGGAGA---AATATAAT-----TTGTGAATTACCTGATGAAAT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 219645 326 -   2853901 TCCACCTTTGTTTGCTTTGCCTCATTGATTAACCATTTTCCATTTACCATCACTGTCTAGTGGAGGTGAGGTGGTCT--CTGTTGGGAACCCCATTCC-----TATTTTGTAATTGTGTGTTTAT-----------TCTTC---ACCA-AATTCTAGAGGAGCCTCAGGAAAAAGACCAGATGGGAGAA-----ATACATGTTT------AGTGTTCAGT---TTTCCTTCTGTAAGACATCTG---CAACTTGTGTTTTTCACGG---AATA-TATCATGGATTTAATGCATACAGAGGCACTTTGTTTTTCATGATTGTGCCT---ACAATTCTATATACG---GATATAAC-----TTATGAATTACATGATGACAT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             501121 326 -   3282555 tccacctttgtttgctttgcttcattaattaatcattttccatttaccgtcactgtctagtggaggtgaggtctcct--ctgttggtaactccattcc-----tgttttgtaattgtgtgtttat-----------tcttc---actg-tattctagaggagcctcaggaaaaagaccagatgggagaa-----atatgtgttt------agtGTTCAGT---TTTCCTTCTGTAAGACATCTG---CAACTTGTGTTTTTCACTG---GATA-TATCATGGATTTAATGTATACAGAGGTACCTTGTTTTTCATGATTGTGCCT---ACAATTCTATGTACA---GATATAAC-----TTGTGAATTACATGATGAAAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       286875 327 -   1024465 TCCACCTTTGTTTGCTTTGCTTCATTAATTAACCATTTTCCATTTATTGTCACTGTCTAGTGGAGGTGAGGTCTCCT--CTGTCGGTAACCCCATTCC-----TGTTTTGTAATTGTGTGTTTAT-----------TCTTC---ACCGTAATTCTAGAGGAGCCTCAGGAAAAAGACCAGATGGGAGAA-----ATACATGTTT------AGTGTTCAGT---TTTCCTTCTGTAAGACAtctg---caacttgtgtttttcactg---aata-tatcatggatttaatgcatacagaggtaccttgtttttcatgattgtgctt---acaattctgtgtatg---gatataAC-----TTGTGAATTACATGATGAAAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       732538 325 -   3745603 TCCATCTTTGTTTGCTTTGCTTCATTAATTAACCATTTTCCATTTACCGTCACTGTCTAGTGGAGGGGAGGTCTCCT--CTGTTGGTAACTCCTTTCC------GTTTTGTATTGTTGTG-TTAT-----------TCTTC--AACCGTAATTCTAGAGGAGCCTCAGGAAAAAGACCAGATGGGAGAA-----ATACATGTTT------AGTGTTCAGT---TTTCCTTCTATAAGACAtctg---caacttgtgtttttcactg---aata-tatcatggatttaatgcatacagaggtaccttgtttttcatgactgtgcct---acaattctatgtatg---gatataAC-----TTGTGAATTACATGATGA-AT
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       640458 325 -   2566024 tgcacctttatttgctttgctccattaattaccattcctgcatttactgtcatcttctagtgtaggtgaattctttt--ctgtcagtaaccttattcc-----tttgttgttattttgtgtttatacaatgtttattcttc---actgtaattctggtggagcctcaagaaagagAGAATAT--GGGAG-----AAATATGTTC------TATGTTCGAC---TTTCCTTCTCTGGGATGTCTG---CAACTTGTGTTTTTCACTT---AGTA-----------ATAATGCATATGGATCTACTGT-TTTTTCATGATTGTGCCT---ATAATTTTATTTAGG---GATATAAC--AGTTTGTGAAGTACATGATAG---
i proCoq1.NW_012149419v1    I 16 C 0
s otoGar3.GL873530            6757128 344 -  36342412 tgcagctttatttgttttgcttcattaattaccattcctccatttactgtcatcttctaatgtaggtgaattctttt---tgttggtaaccccattgc-----tt--ttctccttttgtgtttataccatgtttgtttttc---actgtgattctagtagagcctcaggaaagagATACTACAAGAAAG-----AACTATGTTT------TGTGTTCAACTTTTTTCCTTCTCCGGAAAGGAAGAACCAACTTGTGTTTTTCACTT---AGTGATACCGTGGGCATAATGCATGTAGATCTACCTTAGTTTCCATGATTGTGCCT---GTGATTTTAAGTATG---GGTATAACATAATTTGTGAAGTACATGACAG---
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55171911 330 + 124595110 TGTACTTGCACTTGT-GAGCTTCACTGATCA--CAGCTCCTATTTACAGTCA---TCTAATGGAAATGGTGTTTTATTGCTCCTCATAAGTCCCTTTT----GCTTTTCAAATTTTTGTATTTATAAAATGTTTATTCTTT-----TGTAATT-TAGTGGAGCCTAAAGAAA-------GATGAGAAAA-----ATGTTTAATTTTTCTAACTGTTCAGG---TTTTATTTTCTAGAGGGTCCA---TGGTTT-TGTTTTTTACTT-ACAATA-TATCCTGAACTTGAAGT--------CTGTCTTGTTTTTCCTGGGTGTAGATTGGACAACAGTGTAGATATCCAAGTTAAT-----TTGTGAATTATGTAAGAAAAA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 42945 344 -  40214260 ---TACTGTACTTGT-TTGCTCCACTAATTCCCATTCTTCCACATATTGTCATCTGTTAACACGCGTGAATTTTCTTTTCTGCTGGTCGGCCCATTTCCTTTTTTTGTTATCATTGTGTGTTAATACAGTTTTGATTCACAACAACTATAATTCTGGTGCGGCCTCAGGAAAGAAACAAGATGGGGAAAAACATATATAAATGC------TATGTTCAAT---TTGCCCTCTCTGGAATGTCTG---CAACTTCTGTTTCTCACTTAACAATA-TATCATGAACATGGTATGTGTGGATTTATCTTGTTTTTCATGGCTCTGTGT-----------ATGTAGA---GATACAAT-----TTGTGAATTACATGTAGAAAT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 916736 441 - 119751181 I
e dasNov3.JH569975              26210 12202 -   2180720 I

a score=1106159.000000
s hg38.chr15_KI270850v1_alt    184955  83 +    430880 TTTCCTAATTTTGAA-TCATCC-TTGCATTCCT-AT-AATAAACACTGT---------------------TAGAATGGCTATGGTAATATTTTA-TTTTTGCATTTTTA
s panTro5.chr15              17994584  83 -  83230942 tttcctaattttgaa-tcatcc-ttgcattcct-at-aataaacACTGT---------------------TAGAATGGCTATGTTAATATTTTA-TTTTTGCATTTTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17220901  83 -  99763055 TTTCCTAATTTTGAA-TCATCC-TTGCATTCCT-AT-AATAAACACTGT---------------------TAGAATGGCTATGTTAATATTTTA-TTTTTGCATTTTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       283548  83 +    378907 TTTCCTAATTTTGAA-TCATCC-TTGCATTCCT-AT-AATAAACACTGT---------------------TAGAATGGCTATGGTAATATTTTA-TTTTTGCATTTTTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102139102  83 + 121039945 tttcctaattttgaa-tcatcc-ttgcattcct-at-aataaacactgt---------------------tagaatggctatggtaatatttta-cttttgcattttta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60349246  84 + 169600520 TTTCCTAATTTTGAA-TCATCC-TTGCATTCCT-GT-AATAAACACTGT---------------------TAGAACGGCTGTGGTAATATTCTATTTTTTGCATTTTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107344915  82 - 171882078 TTTCCTAATTTTGAA-TCATCA-TCACATTCCT-AT-AA-AAAAACTGT---------------------TAGAACGGCTATAGTAATATTTTA-TTTTTGCGTTCTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5345709  83 -   6271500 TTTCCTAATTTTGAA-TCATCC-TTGCATTCTT-AT-AATAAACACTGT---------------------AAGAATGGCTATGGTAATATTTCA-TTTTTGCATTTTTA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1804959  84 -   1987038 TTTCCTAATTTTGAA-TCATCC-TTGCATTCCT-AT-AATAAACACTGT---------------------TAGAACGGCTGTGGTAATATTCTATTTTTTGCATTTTTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21063202  82 -  24206276 TTTCCTAATTTTGAA-TCATCA-TCACATTCCT-AT-AA-AAACACTGT---------------------TAGAACGGCTATAGTAATATTTTA-TTTTTGCATTTTTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       296601  82 -   1458659 TTTCCTAATTTTGAA-TCATCA-TCACATTCCT-AT-AA-AAAAACTTT---------------------TAGAACGGCTATAGTAATATTTTA-TTTTTGCATTTTTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       726615  83 -    764599 TTTCCTAATTTTGAA-TCATCC-TTGCATTCCT-AT-AAAAAACACTGT---------------------TAGAAAGGCTATAGTAATATTTTA-TTTTTGCATTTTTA
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 219971  83 -   2853901 TTTCCTAATTTTCAA-TCATCC-TTGCATTCCT-AT-AATAACCACTGT---------------------TAGAATGGATACAGTAATATTTTG-TTTGTGGATTTTTA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             501447  83 -   3282555 TTTCCTAATTTTCAG-TCATCC-TTGCATTCCT-AT-AATAAGCACTGT---------------------TAGAATGGATACAGTAATATTTTG-TGTTTGGATTTTTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       287202  83 -   1024465 TTTCCTAATTTTCAA-TCATCC-TTGCATTCCT-AT-AATAACCACTGT---------------------TAGAATGGATACGGTGATATTTTG-TTTGTGGATTTTTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       732863  81 -   3745603 TTTCCTAATTTTCA--TCATCC-TTGCATTCCG-AT-GATAACCACTGT---------------------TAG-ATGGATACGGTAATATTTTG-TTTGTGGATTTTTA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 917177  83 - 119751181 TTTCCTAATTTTGAA-TCATCC-TTGCATTCCC-AT-AATAAACACTGT---------------------TAGAAAGgatatggtaatactttg-tttttggattttta
i micMur3.chr3              I 441 I 2588
s proCoq1.NW_012149419v1       640783  83 -   2566024 TTTCCTAATTTTGAA-TCATCC-TTGCGTTCCC-AT-AATAAACACTGT---------------------TAGAAAGgatatggtaatacttta-tttttggattttta
i proCoq1.NW_012149419v1    C 0 I 682
s otoGar3.GL873530            6757472  84 -  36342412 TTTCCTAACTTTGAA-TCATTC-TTGCATTCCC-GTAAAtaaacactgt---------------------tagaaaggatatggtaatgctgta-tttttggattttta
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55172241  77 + 124595110 TGGCCTGATTTTGAA-TCATCCTTTGTGTTTTG-GT-AATTAATATTGT---------------------TAGGATAGATGTGGTAATTTTTTG-TTTTCAC-------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 43289 104 -  40214260 -TTACTAATTGTGAATTCATCC-TTATGTTCATAAT-ACTCAGCACTTTCATGGGTGGTGGCTGGAGGGACAAGATGgatataatagtacttta-tttttggcttttt-
i canFam3.chr30             C 0 C 0
e dasNov3.JH569975              26210 12202 -   2180720 I

a score=865249.000000
s hg38.chr15_KI270850v1_alt    185038  94 +    430880 CTTCTTTATAAAA---TAAGATT-----ATAGTTTTGTTTGT----TTCTTTTAAGG---CTCTT-----ATTTCAGTATCAAGGGTA----TGCAG-------GGC--TAACTCGGGAAGCTTTAC
s panTro5.chr15              17994667  99 -  83230942 CTTCTGTATAAAA---TAAGATT-----ATAGTTTTGTTTGT----TTCTTTTAAGG---CTCTTATTTCATTTCAGTATCAAGGGCA----TGCAG-------GGC--TAACTCGGGAAGCTTTAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17220984  99 -  99763055 CTTCTGTATAAAA---TAAGATT-----ATAGTTTTGTTTGT----TTCTTTTAAGG---CTCTTATTTCATTTCAGTATCAAGGGCA----TGCAG-------GGC--TAACTCGGGAAGCTTTAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       283631  98 +    378907 CTTCTGTATAAAA---TAAGATT------TAGTTTTGTTTGT----TTCTTTTAAGG---CTCTTATTTCATTTCAGTATCAAGGGCA----TGCAG-------GGC--TAACTCGGGAAGCTTTAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102139185  99 + 121039945 cttctgtattaaa---taagatt-----atagttttgtttcc----ttcctttaagg---ctcttatttcatttcagtatcaagggta----tgcag-------ggc--taacttgggaagctttac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60349330  99 + 169600520 CTTCTGTATTAAA---TAAGATT-----AAAGTTTTGTTTGT----TTCCTTTAAGG---CTCTTATTTCATTTCAGTATCAAGGATA----TGCAG-------GGC--TATCTTGGGAAGATTTAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107344997  99 - 171882078 CTTCTGTATTAAA---GAAGATT-----AAGGTTTTGTTTGT----TTCCTTTAAGG---CTCTTATTTCATTTCAGTATCAAGGGTG----TGCAG-------GGC--TAACTTGGGAAGCTTTAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5345792  98 -   6271500 CTTCTGTATTAAA---TAAGATT------ATATTTTGTTTGT----TTCCTTTAAGG---CTCTTATTTCATTTCAGTATCAAGGGTA----TGCAG-------GGA--TAGCTTGGGAAGCTTTAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1805043  99 -   1987038 CTTCTGTATTAAA---TAAGGTT-----AAAGTTTTGTTTGT----TTCCTTTAAGG---CTCTTATTTCATTTCAGTATCAAGGATA----TGCAG-------GGC--TATCTTGGGAAGATTTAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21063284  99 -  24206276 CTTCTGTATTAAA---GAAGATT-----AAAGTTTTGTTTGT----TTCCTTTAAGG---CTCTTATTTCATTCCAGTATCAAGGGTG----TGCAG-------GGC--TAACTTGGGAAGCTTTAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       296683  99 -   1458659 CTTCTGTATTAAA---GAAGATT-----AAGGTTTTGTTTGT----TTCCTTTAAGG---CTCTTATTTCATTTCAGTATCAAGGGTG----TGCAG-------GGC--TAACTTGGGAAGCTTTAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       726698  93 -    764599 CTTCTGTATTAAA---GAAGATT-----AAGGTTTTGCTTGT----TTCCTTTAAGG---CTCTTATTTCA------TATCAAGGGTG----TGCAG-------GGC--TAACTTGGGAAGCTTTAC
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 220054  93 -   2853901 CTTCTATGTTAAG---TAAGGTT-----ATACTTTTGT---T----TCCTTTT-GGG---CTTCTATTTCATTTCAGTATG--TGGTA----TGCAG-------GGT--TGACTTGGGAAGCTTTAT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             501530  75 -   3282555 CTTCTGTATTAAG---TAAGGTT-----ATACTTT-----------------------------TATTTCATTTCAGTATT--GGGTT----TGCAG-------GGT--TGACTTAGGAAGCTTTAC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       287285  92 -   1024465 CTTCTATAT-------TAAGGTT-----ATACTTTTGTTTGT----TTCCTTT-GGG---CTTCTATTTCATTTCAGTATC--TGGTA----TGCAG-------AGT--TGACTTGGGAAGCTTTAC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       732944  99 -   3745603 CTTCTGTATTAAG---TAAGGTT-----GTACTTT-GTTTGT----TTCCTTT-GGG---CTTCTATTTCATTTCAGTATC--GGGTATTGCTGCAG-------GGT--CGACTTGGGAAGCTTTAC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6757557  98 -  36342412 cttttatattaag---tcagatt-----gtagtatagt---t----ttgcttttatt---ctcttgtttcgtttctgtatcaggactg----tgcag-------ggcaatgacttgggaagctttac
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  55172318  88 + 124595110 --------TTAGAGTCTAAGGTTGTTGAATGGTTTTGTTTCT----TTTTT---AGG---CTCTTGTTTCACTTCTGCATCAAGGTTC---------------------TGACTTAGGAAGCTTTGC
i mm10.chr9                 C 0 I 177
s canFam3.chr30                 43393 114 -  40214260 ---ctactttaag---tgaaatt-taatgtagtttggtttatttacttccttttaggctcctcttgtctcatttcagaatcaggatta----tgtagtctcatagga--tgacttggtgagctttgt
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       640866 682 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I

a score=2380841.000000
s hg38.chr15_KI270850v1_alt    185132 246 +    430880 -ATCTTTTTT------------------------------------------------CTAAGACCTAGGATGTAGATCTAGTTTACA-cagtaattttcaactgcaggaatattttg-cctcccatgggacatttggaaatatctggagacattttt-gtggtcacaactggtcacggtcgggaggtcttattggcattccgtgggtagaggggatgttactaaatgtcccacaacacaccaggagaac---cct-c---acaaagaattgtctggcccaagatatcaatattgctgaggctga
s panTro5.chr15              17994766 246 -  83230942 -ATCTTTTTT------------------------------------------------CTAAGACCTAGGATGTAGATCTAGTTTACA-cagtaattttcaactgcaggaatattttg-cctcccatgggacatttggaaatatctggagacattttt-gtggtcacaactggtcacggtcgggaggtcttattggaattctgtgggtagaggggatgttactaaatgtcccacaacacaccaggagaac---cct-t---acaaagaattgtctggcccaagatatcagtattgctgaggctga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17221083 246 -  99763055 -ATCTTTTTT------------------------------------------------CTAAGACCTAGGATGTAGATCTAGTTTACA-cagtaattttcaactgcaggaatattttg-cctcccatgggacatttggaaatatctggagacattttt-gtggtcacaactggtcacggtcgggaggtcttattggaattctgtgggtagaggggatgttactaaatgtcccacaacacaccaggagaac---cct-t---acaaagaattgtctggcccaagatatcagtattgctgaggctga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       283729 246 +    378907 -ATCTTTTTC------------------------------------------------CTAAGACCTAGGATGTAGATCTAGTTTACA-cagtagttttcagctgcaggaatgttttg-cctcccatgggacatttggaaatatctggagacattttt-gtggtcacaactggtcacggtcgggaggtcttattggcattccatgggtagaggggatgttactaaatgtcccacaacacaccaggagaac---cct-c---acaaagaattgtctggcccaagatatcagtattgctgaggctga
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102139284 247 + 121039945 -atctttctt------------------------------------------------ctaAGACCTAGGATGTAGATCTGGTTTACG-cagtaattttcaactgcaggaatgttttg-cctcccatgggacatttggaaatatctggagacattttt-gtggtcacaactggtcacggtcgggaagtcttattggcattccgtgggtagaggggatgttactgaatgtcccacagcacaccaggagaac---cctcc---acaaagaattgtctggcccaagataccaatattgctgaggctga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60349429 247 + 169600520 -ATCTTTCTT------------------------------------------------CTAAGACCAAGGATGTAGATCTAGTTTATA-cattaattttcgactgcaggaatattttgccctcccatgggacgtctggaaatatctggagacattttt-gtggtcacagctggtcatggtcgggaggtcttattggcattccgtgggtagagaggatgttactaaatgtcccacaacat-gccggggaac---cctcc---acaaagaattgtctggcccaagatatcaatattgctgaggctga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107345096 247 - 171882078 -ATCTTTTTT------------------------------------------------CTAAGACCTAGGATGTAGATCTAGTTTACA-CAGTAACTTTTGCCTACAGGAATattttg-cctcccatgggacatttggaaatatctggagacattttt-gtggtcacaactggccatggtcgggaggtcttattggcattccgtgggtagaagggatgttactaaatgtcccacaacacagcaggagaac---cctct---gcaaagaattgtctggcccaatatatcaatattgctgaggctga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5345890 247 -   6271500 -ATCTTTTTT------------------------------------------------CTAAGACCTAGGATGTAGATCTAGTCTACA-cagtaattttcaattacaggaatattatg-cctcccatgggatgtttggaactatctggagacattttt-gtggtcacaactggtcatgcttggaaggtcttattggcatttcatgggtagaggggatattactaaatgtgccacaacacagcaggagaac---cctcc---acaaagaattgtctggcccaatatatcaatattgctgaggctga
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1805142 248 -   1987038 -ATCTTTCTT------------------------------------------------CTAAGACCAAGGATGTAGATCTAGTTTATA-cattaattttcaactgcaggaatattttgccctcccatgggacgtttggaaatatctggagacattttt-gtggtcacagctggtcatggtcgggaggtcttattggcattccgtgggtagagaggatgttactaaatgtcccacaacatgccaggggaac---cctcc---acaaagaattgtctggcccaagatatcaatattgctgaggctga
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21063383 247 -  24206276 -ATCTTTTTT------------------------------------------------CTAAGACCTAGGATGTAAATCTAGTTTACA-CAGTAATTTTTGCCTACAGGAATattttg-cctcccatgggacgtttggaaatatctggagacattatt-gtggtcacaactggccatggtcgggaggtcttattggcattccgtgggtagaggggatgttattaaatgtcccacaacacaccaggagaag---cctcc---acaaagaattgtctggcccaatatatcaatattgctgagggtga
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       296782 245 -   1458659 -ATCTTTTTT------------------------------------------------CTAAGACCTAGGATGTAAATCTAGTTTACA-CAGTAATTTTTGCCTACAGGAATattttg-cctcccatgggacatttggaaatatctggagacattttt-gtggtcacaactggccatggtcgggaggtcttattggcattccgtgggtagaggggatgttattaaatgtcccaca--acaccaggagaag---cctcc---acaaagaattgtctggcccaatatatcaatattgctgagggtga
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       726791 247 -    764599 -ATCTTTTTT------------------------------------------------CTAAGACCTAGGATGTAGATCTAGTTTACA-CAGTAATTTTTGCCTGCAGGAATattttg-cctcccatgggacatttggaaatatctggagacattttt-gtggtcacaactggccatggtcgggaggtcttattggcatcccgtgggtagaggggatgttattaaatgtcccacaacacaccaggagaag---cctcc---acaaagaattgtctggcccaatatatcaatattgctgagggtga
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 220147 251 -   2853901 -ATCTTTTTTTTT-----------------------------------------CCCCCTAAGATCTGGGATGTAGATTTAGTTTACA-Tagtaattttcaactggaggagattttta-cctcccg-gggacatttggaagtatctggagacatttttggttttcacaactggtcatggta-gggggtgctgttggcatttcttgggtagaaaggatgtcactaaacatcctacaataca-cggaagaac---cctcc---acgaagaattgtccggcccaatatagcaatattgctgaa-ttga
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             501605 256 -   3282555 -ATCTTTTTTTTT------------------------------------TTTTCCCCCCTAAGATCTGGGATGTAAATTTAGTTTACA-cagtatttttcaactggaggagattttta-tctccca-gggacatttggaaatatctggagccatttttggttttcacaactggtcatggta--ggagtgctgttggcatttcttgggtagagaggatgtcactaaacatcccacaataca-cagaagaac---cctcc---acaaagaattgtctggcccaatatatcaatattcctgaagttga
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       287377 292 -   1024465 -GTCtttttttttttttttgttttttttttttttttttttttttttttttttttttCCCTAAGATCTGGGATGTAGATTTAGTTTACA-cagtagttttcaactggaggagattttta-cctcccg-gggacatttggaaatatctggagccatttttggttttcataaccggtcatggtg--ggggtgctgttggcatttcttgggtagagaggttgttacgaaacatcctacaataca-cagaagtac---cttcc---acaaagaattgtctggcccaatatatcaatattgctgaagttga
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       733043 262 -   3745603 -ATCTCttttttt------------------------------tttttttttttCCCCCTAGGATC-AGGATGTAGATTTAGTTTACA-cagtaattttcaactggaggagattttta-tgtcctg-gggacatttggaaatatctggagccatttttggttttcacaactggtcatggta-cggggtgctgttggcatttcttgggtagagaggatgtcactaaacatcctacaataca-cagaagaac---cctcc---gcaaagaattgtctggcccaatatatcaatatttctgaagttga
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6757655 242 -  36342412 -atcttcttt------------------------------------------------ctatgatctttga--------cagtttgAACcagtaattttcaaccagtggtaatttttg-cctctcatgagacatttggaaaaacctggagatgtttttggttgtcacaactggctgtggtgagggggtactattgacatttcatgggtagag-gtatgttagtgaacatctaacaacaca-caaaggaactgtcctca---agaaagaatgatctagtccaatatatcgctattgttgaggtgga
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 43507 236 -  40214260 gtattttttt------------------------------------------------ctaaaatctagga--------cagtttaaa-taa-aattTCAaactggatcca-gttttg-cctcccatgagacatctggaaatacctggagataattttggttgtcacaaccagctgaggggggggtgtggtgtgggcattttgtgggtagaggggatgttactaaatgtcttacgatgtc-cag-----t---cctgcatgacaaagaattatgttgtgcaaaatatcagtactcctggggttta
i canFam3.chr30             C 0 I 126
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       640866 682 -   2566024 I
e mm10.chr9                  55172406 177 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I

a score=91270.000000
s hg38.chr15_KI270850v1_alt    185378 10 +    430880 caaaccctgG
s panTro5.chr15              17995012 10 -  83230942 caaaccctgG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17221329 10 -  99763055 caaaccctgG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       283975 10 +    378907 caaaccctgG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102139531 10 + 121039945 caaaccctgG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60349676 10 + 169600520 caatccctgG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107345343 10 - 171882078 caaaccctgG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5346137 10 -   6271500 caaacgctgG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1805390 10 -   1987038 caatccctgG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21063630 10 -  24206276 caaaccctgG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297027 10 -   1458659 caaaccctgG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       727038 10 -    764599 caaaccctgG
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 220398 10 -   2853901 gaaacTGTGG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             501861 10 -   3282555 gaaacTGTGG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       287669 10 -   1024465 gaaacTGTGG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       733305 10 -   3745603 gaaacTGTAG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6757897 10 -  36342412 gaaaacctgC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 43869 10 -  40214260 caagccctgg
i canFam3.chr30             I 126 I 143
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       640866 682 -   2566024 I
e mm10.chr9                  55172406 177 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I

a score=466790.000000
s hg38.chr15_KI270850v1_alt    185388 47 +    430880 TTTAAATAAATGTCCAATTTGGA--------GGATGAGTC--TGTCTTTTTCCTTCT
s panTro5.chr15              17995022 49 -  83230942 TTTAAATAAATGTCCAATTTGGA--------GGATGAGTCTTTGTCTTTTTCCTTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17221339 49 -  99763055 TTTAAATAAATGTCCAATTTGGA--------GGATGAGTCTTTGTCTTTTTCCTTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       283985 49 +    378907 TTTAAATAAATGTCCAATTTGGA--------GGATGAGTCTTTGTCTTTTTCCTTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102139541 49 + 121039945 TTTAAATAAATGTCCAATTTGGA--------GGATGAgtctttgtctttttccttct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60349686 49 + 169600520 TTTAAATAAACATCAAGTTTGGA--------GGCCAAGTCTTTGTCTTTTTCCTTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107345353 49 - 171882078 TTTAAATAAATGTCCAATTTGGA--------AGATGAGTCTTTGTCTTTTTCCTTCT
i macFas5.chr7              C 0 I 100
s macNem1.NW_012011056v1      5346147 48 -   6271500 TTTAAATGAACGTCCAATTTGGA--------AGATGAGTCTTTGTC-TTTTCCTTCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1805400 49 -   1987038 TTTAAATAAACATCCAGTTTGGA--------GGCCAAgtctttgtctttttccttct
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21063640 49 -  24206276 TTTAAATAAATGTCCAATTTGGA--------AGATGAGTCTTTGTCTTTTTCCTTCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297037 49 -   1458659 TTTAAATAAAAGTCCAATTTGGA--------GGATGAGTCTTTGTCTTTTTCCTTCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012118866v1       727048 49 -    764599 TTTAAATAAAAGTCCAATTTGGA--------GGATGAGTCTTTGTCTTTTTCCTTCT
i colAng1.NW_012118866v1    C 0 C 0
s calJac3.chrY                 220408 49 -   2853901 TTTAAATAAAAATCCAATCTAGA--------GGATGAGTCTTTGTCTTTTTCCTTCT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             501871 44 -   3282555 TTTAAATAAAAATCCAATCTAGA--------GGATGAGTCTTTGTCTTTTTC-----
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       287679 49 -   1024465 TTTAAATAAAAATCCAATCTAGA--------GGATGAGTGTTTGTCTTTTTCCTTCC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       733315 49 -   3745603 TTTAAATAAAAATCCAATCTAGA--------GGATGAGTCTTTGTCTTTTTCCTTCT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6757907 43 -  36342412 TTGAAATAAATATCTGAGCCTGATCTGTTTTGGATGAGTCTTT--------------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 44022 34 -  40214260 TTTAAATAAACGTCTGAGCTGGA-----------------TACGTTTTTTT------
i canFam3.chr30             I 143 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       640866 682 -   2566024 I
e mm10.chr9                  55172406 177 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I

a score=36416.000000
s hg38.chr15_KI270850v1_alt    185435 3 +    430880 TCT
s panTro5.chr15              17995071 3 -  83230942 TCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17221388 3 -  99763055 TCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       284034 3 +    378907 TCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102139590 3 + 121039945 tct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60349735 3 + 169600520 TCT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5346195 3 -   6271500 TCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1805449 3 -   1987038 tct
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21063689 3 -  24206276 TCt
i chlSab2.chr29             C 0 I 1
s manLeu1.NW_012105520v1       297086 3 -   1458659 TCt
i manLeu1.NW_012105520v1    C 0 I 1
s colAng1.NW_012118866v1       727097 3 -    764599 TCt
i colAng1.NW_012118866v1    C 0 n 0
s calJac3.chrY                 220457 3 -   2853901 TCT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             501915 2 -   3282555 -CT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       287728 3 -   1024465 TCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       733364 3 -   3745603 TCT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6757950 3 -  36342412 TCT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 44056 3 -  40214260 TCT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       640866 682 -   2566024 I
e mm10.chr9                  55172406 177 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=353035.000000
s hg38.chr15_KI270850v1_alt    185438 78 +    430880 GCGTATTGGTC--TCCA--GATTTTCCATTTCTTCA-GTTAGTTTTCGTA----ACTGTAGATTCT-------TAAAAGAAATGAACACTTCTC
s panTro5.chr15              17995074 78 -  83230942 GCGTATTGGTC--TCCA--GATTTTCCGTTTCTTCA-GTTAGTTTTCGTA----AGTGTAGATTCT-------TAAAAGAAATGAACACTTCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17221391 78 -  99763055 GCGTATTGGTC--TCCA--GATTTTCCGTTTCTTCA-GTTAGTTTTCGTA----AGTGTAGATTCT-------TAAAAGAAATGAACACTTCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       284037 78 +    378907 GCGTATTGGTC--TCCA--GATTTTCCGTTTCTTCA-GTTAGTTTTCGTA----ACTGTAGATTCT-------TAAAAGAAATGAACACTTCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102139593 78 + 121039945 gtgtattggtc--tCCA--GATTTTCCATTTCTTCA-GTTGGTTTTTGTA----ACTGTAGATTCT-------TAAAAGAAATGAACACTTTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60349738 78 + 169600520 GTGTATTAGTC--TCCA--GATTTTCCACTTCTTCA-GTTAGTTTTCGTA----ACTGTAGATTCT-------TAAAAGAAATGAACACTTCAT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5346198 82 -   6271500 GCGTATTGGTC--TCCA--GATTTTCCATTTCTTCAGGTCAGTTTTCGTAGTAGACTGTAGATTCT-------TAAAAG-AATGAACACTTCAT
i macNem1.NW_012011056v1    C 0 I 321
s cerAty1.NW_012002657v1      1805452 78 -   1987038 gtgtattagtc--tCCA--GATTTTCCACTTCTTCA-GTTAGTTTTCGTA----ACTGTAGATTCT-------TAAAAGAAATGAACACTTCAT
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 220460 70 -   2853901 ATATGTTGATC--TCCA--TATTTTCCACTTCCTCT-----GTTTTAGTA----A-TGTAGATTCT-------AAAAAAAAAT---CGCTTCAT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             501917 77 -   3282555 ATGTGTTGATC--TCCA--TATTTTCCACTTCTTCA-----GTTTTAGTA----A-TGTAGATTCTAAAAAAAAAAAAAAAAT---CACTTCAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       287731 73 -   1024465 GTGTGTTGATC--TCCA--TATTTTCTACTTCTCCA-----GTTTTAGTA----A-TGTAGATTCT-AAAAAAAAAAAAAAAT---TGCTT---
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       733367 70 -   3745603 ATGTGTTGATC--TCCA--TATTTTCCACTTCTTCA-----GTTTTAGTA----A-TGTAGATTCT-------AAAAAAAAAT---TGCTTCAT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6757953 80 -  36342412 ATGTATTGGTCTGTCAA--GATTTTCTACTTCTGTA-GCCATTTTTTGTA----ACCATAGATCCT-------AGAAAAAAATGATCACTGCAT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 44059 71 -  40214260 ACACATGAATC--TCCATTTTTTTTCCATTCCTTTA-GTCAGTTTTAGTA----ATTTTAGATTCT--------AAAAAAAAT---CAC-----
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       640866 682 -   2566024 I
e mm10.chr9                  55172406 177 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=295685.000000
s hg38.chr15_KI270850v1_alt    185516 54 +    430880 CCatacttct-aaggtgttgtaaagatgtgtaaagttttcactttttgcatcata
s panTro5.chr15              17995152 54 -  83230942 CCGTACTTCT-GAGGTGTTGTAAAGATGTGTAAAGTTTTCACTTTTTGCATCATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17221469 54 -  99763055 CCGTACTTCT-GAGGTGTTGTAAAGATGTGTAAAGTTTTCACTTTTTGCATCATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       284115 54 +    378907 CCATACTTGT-AAGGTGTTGTAAAGATGTGTAAAGTTTTCACTTTTTGCATCATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102139671 54 + 121039945 CCatacttct-aaggtgttgtaaagatgtgtaaagttttcactttttgcatcata
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60349816 54 + 169600520 CCATACTTAT-AAGGTATTGTAAAGATGTGTAAAGTTTTCACTTTTTGCATCATA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5346601 54 -   6271500 CCATACTTCT-AAGGTGTTATAAAGATGTGTAAAGTTTTCACTTTTTGCATCATA
i macNem1.NW_012011056v1    I 321 C 0
s cerAty1.NW_012002657v1      1805530 54 -   1987038 CCATACTTGT-AAGGTATTGTAAAGATGTGTAAAGTTTTCACTTTTTGCATCATA
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 220530 54 -   2853901 GTATACTTCT-AAGCTGTTGGAAAGATGTGTAAAGTTTTCACTTTTTGCATCATA
i calJac3.chrY              C 0 I 15
s saiBol1.JH378276             501994 54 -   3282555 GTGTACTTCT-AAGCTGTTGTAAAGATGTGTAAAGTTTTCAGTTTTTGCATCATA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       287804 48 -   1024465 ------TTCT-AAGCTGTTGTAAAGATGTGTAAAGTTTTCACTTTTTGCATCATA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       733437 54 -   3745603 GTATATTTCT-AAGCTGTTGTAAAGATGTGTAAAGTTTTCACTTTTTGCATCATA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6758033 54 -  36342412 CTATACTTTTGAAACTCTTGTAAAGATGT-CAGAACATTCACTTTTTGAATAACG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 44130 19 -  40214260 TCATCCTTAC---------------------------------TTTTgaatc---
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       640866 682 -   2566024 I
e mm10.chr9                  55172406 177 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=133820.000000
s hg38.chr15_KI270850v1_alt    185570 31 +    430880 ttcacatgtggctat-atgcccttttgtctt-c
s panTro5.chr15              17995206 31 -  83230942 TTCACATGTGGCTAT-ATGCCCTTTTGTCTT-C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17221523 31 -  99763055 TTCACATGTGGCTAT-ATGCCCTTTTGTCTT-C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       284169 31 +    378907 TTCACATGTGGCTAT-ATGCCCTTTTCTCTT-C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102139725 31 + 121039945 ttcacatgtggctat-atgcccttttctctt-c
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60349870 31 + 169600520 TTCACATGTGGCTAT-ATGCCATTTTCTCTT-C
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5346655 31 -   6271500 TTCACATGTGGCTAT-ATACCCTTTTCTCTT-C
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1805584 31 -   1987038 TTCACATGTGGCTAT-ATGCCATTTTCTCTT-C
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378276             502048 30 -   3282555 TTCACATGTGGCTAT-ATGCCTTTTTAATTC--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       287852 30 -   1024465 TTCACATGTGGCTAT-ATGCCTTTTTAATTC--
i cebCap1.NW_016107979v1    C 0 I 1
s aotNan1.NW_018511953v1       733491 31 -   3745603 TTCCCATGTTACTAT-ATGCCTTTTTAATTCA-
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6758087 31 -  36342412 TTCATATGTGGTTAT-ATTCTCTTTTTATTT-C
i otoGar3.GL873530          C 0 I 1
s canFam3.chr30                 44149 26 -  40214260 ------tatagttatgaagctcttttcattt-c
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       640866 682 -   2566024 I
e mm10.chr9                  55172406 177 + 124595110 I
e calJac3.chrY                 220584 15 -   2853901 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=263517.000000
s hg38.chr15_KI270850v1_alt    185601 67 +    430880 -aaagt---tttctttatcttgatcacttatcagaggcgtgactg-ttttattatcttagtcttttgaaaga
s panTro5.chr15              17995237 67 -  83230942 -AAAGT---TTTCTTTATCTTGATCACTTATCAGAGGCGTGACTG-TTTTATTATCTTAGGCTTTTGAAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17221554 67 -  99763055 -AAAGT---TTTCTTTATCTTGATCACTTATCAGAGGCGTGACTG-TTTTATTATCTTAGGCTTTTGAAAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       284200 67 +    378907 -AAAGG---TTTCTTTATCTTGATCAATTATCAGAGGCGTGACTG-TTTTATTATCTTAGTCTTTTGAAAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102139756 67 + 121039945 -aaagt---tttctttatcttgatcacttatcagaggtgtgactg-ttttattatcttagtcttttgaaaga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60349901 63 + 169600520 -AAAGT-------TTTATCTTGATTACTTATCAGAAGCTTGACTG-TTTTATTTTCTTAGTCTTTTGAAAGA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5346686 67 -   6271500 -AAAGT---TTTCTTTATCTTGATCACTTTTCAGAGGCATAACTC-TTTTATTATCTTAGTCTATTGAAAGA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1805615 63 -   1987038 -AAAGT-------TTTATCTTGATTACTTATCAGAAGCTTGACTG-TTTTATTATCTTAGTCTTTTGAAAGA
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 220599 44 -   2853901 -AAAGT---TTTCTTTCTCTTGATTACTTATCAG------------------------AGTCTTTTGAAAGA
i calJac3.chrY              I 15 C 0
s saiBol1.JH378276             502078 38 -   3282555 -AAAGT---TTTCTT----TTGATTACTTATCAG------------------------AGTC--TTGAAAGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       287883 40 -   1024465 -AAAGT---TTTCTT----TTGATTGCTTATCAG------------------------AGTCTTTTGAAATA
i cebCap1.NW_016107979v1    I 1 C 0
s aotNan1.NW_018511953v1       733522 44 -   3745603 -AAAGT---TTTCTTTATCTTGATTACTTATCAG------------------------AGTCTTTTGAAAGA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6758119 66 -  36342412 -AAAGT-----CATTTGTCTTGATGACTTGTCAGTGGCTCATCTGTTTTTATTATATTGATCTTTTGAAATA
i otoGar3.GL873530          I 1 I 140
s canFam3.chr30                 44175 71 -  40214260 tgaagttgttttctctattgtgactacttgtcagaagcttgtctg-ttttattatgttggccttttgaaaga
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       640866 682 -   2566024 I
e mm10.chr9                  55172406 177 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=132155.000000
s hg38.chr15_KI270850v1_alt    185668 33 +    430880 atcctccc-------------------------------------ttagttttattttttaaatttagtg
s panTro5.chr15              17995304 33 -  83230942 ATCCTCCT-------------------------------------TTAGTTTTATTTTTTTAATTTAGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17221621 32 -  99763055 ATCCTCCT-------------------------------------TTAGTTTTATTTTTT-AATTTAGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       284267 33 +    378907 ATCCTCCT-------------------------------------TTAGTTTTATTTTTTAAATTTAGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102139823 33 + 121039945 atcctcct-------------------------------------ttagttttattttttaaatttagtg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60349964 33 + 169600520 ATCCTCCT-------------------------------------GTAGTTTTATTTTTTAAATCTAGTG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5346753 70 -   6271500 ATCCTCCTTTCAAAATAAATATTTTTTATTTTATTAAAAAATAAAATAGTAGTTTTTTTAAAATTTAGTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1805678 33 -   1987038 ATCCTCCT-------------------------------------GTAGTTTTATTTTTTAAATCTAGTG
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 220643 32 -   2853901 ATCCTCCT-------------------------------------TTAATTTTA-TTTTTACATCTAGTG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             502116 31 -   3282555 ATCCTCCT-------------------------------------TTAATTTTATTTTTTAAATCTAG--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       287923 30 -   1024465 A---TCCT-------------------------------------TTAATTTTATTTTTTAAATCTAGTG
i cebCap1.NW_016107979v1    C 0 I 20
s aotNan1.NW_018511953v1       733566 33 -   3745603 ATCCTCCT-------------------------------------TTAATTTTATTTTTTAAATCTAGTG
i aotNan1.NW_018511953v1    C 0 I 20
s otoGar3.GL873530            6758325 48 -  36342412 ctctgtct----------------------ctaaaaaaaaaagaaaTAGTTTTATTTTTTAAATCTAGTA
i otoGar3.GL873530          I 140 C 0
s canFam3.chr30                 44246 24 -  40214260 --------------------------------------------atcagtcct-tttcttaaacctaat-
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       640866 682 -   2566024 I
e mm10.chr9                  55172406 177 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=16243.000000
s hg38.chr15_KI270850v1_alt    185701 14 +    430880 gg---ttgttttcacat
s panTro5.chr15              17995337 14 -  83230942 GG---TTGTTTTCACAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17221653 14 -  99763055 GG---TTGTTTTCACAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       284300 14 +    378907 GG---TTGTTTTCACAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102139856 14 + 121039945 gg---ttgttttcacat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60349997 17 + 169600520 GGTTTTTTTTTTCACGT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5346823 15 -   6271500 GG--GTGtttttcactt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1805711 16 -   1987038 GG-GTTTTTTTTCACGT
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 220675 10 -   2853901 -------TTTTTCATTT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             502147  8 -   3282555 ---------TTTCACTT
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6758373 13 -  36342412 --TGTTTGTTTTCTT--
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       640866 682 -   2566024 I
e aotNan1.NW_018511953v1       733599 20 -   3745603 I
e mm10.chr9                  55172406 177 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e canFam3.chr30                 44270  0 -  40214260 C
e cebCap1.NW_016107979v1       287953 20 -   1024465 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=50678.000000
s hg38.chr15_KI270850v1_alt    185715 16 +    430880 tttccttgtgtcttaa
s panTro5.chr15              17995351 16 -  83230942 TTTCCTTATGTCTTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17221667 16 -  99763055 TTTCCTTATGTCTTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       284314 16 +    378907 TTTCCTTGTGTCTTAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102139870 16 + 121039945 tttccttatgtcttaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60350014 16 + 169600520 TTTCCTTATGTCTTAA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5346838 16 -   6271500 tttccttaggtcttca
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1805727 16 -   1987038 TTTCCTTATGTCTTAA
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 220685 10 -   2853901 TTTGCTTGTC------
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             502155 10 -   3282555 TTTTCTTGTC------
i saiBol1.JH378276          C 0 C 0
s proCoq1.NW_012149419v1       641548 16 -   2566024 TTTTCTTGTGTTTTAA
i proCoq1.NW_012149419v1    I 682 C 0
s otoGar3.GL873530            6758386 16 -  36342412 TTTGCTTGTGTTTTAA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 44270  8 -  40214260 -tttcttga-------
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e aotNan1.NW_018511953v1       733599 20 -   3745603 I
e mm10.chr9                  55172406 177 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cebCap1.NW_016107979v1       287953 20 -   1024465 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=1026781.000000
s hg38.chr15_KI270850v1_alt    185731 146 +    430880 ttatttcccctttttgtttattttgctttttctagtttagtggatcaatgtaatttaaactgc-tttttaaacaaacctgtaatgg--tatacattttctt-tgggtgctgtttgactttattgcacaagttttaaaatct-----attttcTAA
s panTro5.chr15              17995367 146 -  83230942 TTATTTCCCCTTTTTGTTTATTTTGCTTTTTCTAGTTTAGTGGATCAGTGTAATTTAAACTGC-TTTTTAAACAAACATGTAAGGG--TATACATTTTCTT-TGGGTGCTGTTTGACTTTATTGCACAAGTTTTAAAATCT-----ATTTTCTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17221683 146 -  99763055 TTATTTCCCCTTTTTGTTTATTTTGCTTTTTCTAGTTTAGTGGATCAGTGTAATTTAAACTGC-TTTTTAAACAAACATGTAAGGG--TATACATTTTCTT-TGGGTGCTGTTTGACTTTATTGCACAAGTTTTAAAATCT-----ATTTTCTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       284330 146 +    378907 TTATTTCCCCTTTTTGTTTATTTTGCTTTTTCTAGTTTAGTGGATCAATGTAATTTAAACTGC-TTTTTAAACCAACATGTAAGGG--TATACATTTTCTT-TGGGTGCTGTTTGACTTTATTGCACAAGTTTTAAAATCT-----ATTTTCTAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102139886 145 + 121039945 ttatttccccttttt-cttagtttgCTTTTTCTAGTTTAGTGGATCAATGTAATTTAAACTGG-TTTTTAAACAAACATGTAAGGG--TATACATTTTCTT-TGGGTGCTGTTTGACTTTATTGCACAAGTTTTAAAATCT-----ATTTTCTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60350030 146 + 169600520 TTAATTCCCCTTTTTATTTAGTTTGCTTTTTCTAATTTAGTGGATCAATGTAATTTAAATTGC-TTTTTAAACAAACACGTAAGGG--TATATATTTTCTT-TGGGTGCTGTTTGACTTTATTGCACAAGTTTTAAAATCT-----GTTTTCTAA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5346854 138 -   6271500 ttattttccctttttat----tttgctttttcTAGTGTACTGGATCAAGGTAATTTAAATTGA-TTTTTAAACATA----TAAGGG--TATACACTTCTTT-TGGGTGCTGTTTGACTTTATTGCACAAGTTTTAAAATCT-----ATTTTCTAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1805743 146 -   1987038 TTAATTCCCCTTTTTGTTTATTTTGCTTTTTCTAATTTAGTGGATCAATGTAATTTAAATTGC-TTTTTAAACAAACGCGTAAGGG--TATATATTTTCTT-TGGGTGCTGTTTGACTTTATTGCACAAGTTTTAAAATCT-----GTTTTCTAA
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 220695 146 -   2853901 TTATTTCCCCTTTTTGTTTATTTTGCCTTTTCTAGTTTAGTTGATTAATGTAATTTAAATTGC-ATTATAAACAAACATGTAAGGG--TATACATTTTCTT-TGGGTGCTGTTTGACTTTATTGTATAAGTTTTAAAATCT-----ATTTTCTAA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             502165 146 -   3282555 TTATTTCTCCTTTTTGTTTATTTTGCCTTTTCTAGTTTAGTGGATTAATGTGATTTAAATTGC-ATCATAAACAAACATGTAAGAG--TATACATTTTCTT-TGGGTGCTGTTTGACTTTATTGCACAAGTTTTAAAATCT-----ATTTTCTAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       287973 147 -   1024465 TTATTTCCCCTTTTTGTTTATTTTGCCTTTTCCAGTTTAGTGGATTAATGTAATTTAAATTGCTTTTATAAACAAACATGTAAGGG--TATACATTTTCTT-TGGGTGCTGTTTGACTTTATTGCACAAGTTTTAAAATCT-----ATTTTCTAA
i cebCap1.NW_016107979v1    I 20 I 62
s aotNan1.NW_018511953v1       733619 141 -   3745603 TTATTTCCTCTTTTTGTTTATTTTGCCTTTTCTAGTTTAGTGGATTA-----ATTTAAATTGC-ATTATAAACAAACATGTAAGGG--TATACATTTTCTT-TGGGTGCTGTTTGACTTTATTGCACAAGTTTTAAAATCT-----ATTTTCTAA
i aotNan1.NW_018511953v1    I 20 I 62
s proCoq1.NW_012149419v1       641564 147 -   2566024 TTATTTCTCCCTTTT---TATTTTGCTTTTTCTAGCTTAGCAGATTAATGTAATTTAAATTGC-TTTTTTAACAAACACGTAAGGG--TATACA-TTTCTT-GGAGTGCCATTTGACTTTATTGCCTAAGTTTTAAAATTTAGTATATTTTCCAA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6758402 141 -  36342412 TTATT----CCTTTT---TATTTTGCTTTTTCCACTTTAGTGGATCAATGTAATTTAAATTGC-TTTTT----AAACATTTAAGAGGTTTTACA-TTTCTT-GGAGTGTTCCTTGACCTTATTGCACAAGTTTTAAAATTTAGTACATTTTCCAA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 44278 130 -  40214260 ---------gtatttttttcttttgc-ttttctcgtttatgagatcaccatgatttaaattgc-ttt---aaCAAACATGTAAAGG--TACACATTTTCTTCTGTGTGCCATTTGACTTCATTGCATAGGTTT---AGTAT-----A-TTTCTAA
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e mm10.chr9                  55172406 177 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100   0 -    764599 I
e manLeu1.NW_012105520v1       297089   1 -   1458659 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=244754.000000
s hg38.chr15_KI270850v1_alt    185877 59 +    430880 ATAGTTTGTATTTTCCAAGTCATTTTATTGCATCCTCTGTTCACATTGCTCTTACTATT
s panTro5.chr15              17995513 59 -  83230942 ATAGTTTGTATTTTCCAAGTCATTTTATTGCATCCTCTGTTCACATTGCTCTTACTATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17221829 59 -  99763055 ATAGTTTGTATTTTCCAAGTCATTTTATTGCATCCTCTGTTCACATTGCTCTTACTATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       284476 59 +    378907 ATAGTTTGTATTTTCCAAGTCATTTTATTGCATCCTCTGTTCACATTGCTCTTACTATT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102140031 59 + 121039945 ATAGTTTGTATTTTCCAAGTCATTTTATTGCATCCTCTGTTCACATTGCTCTTACTATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60350176 59 + 169600520 ATACTTTGTATTTTCTAAGTCATTTTATTGCATCCTGTGTTCACATTGCTCTTACTATT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5346992 59 -   6271500 ATAGTTTGTATTTTCTAAGTCATTTTATTGCAACCTCTGTTCACATTGCTCTTACTACT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1805889 59 -   1987038 ATACTTTGTATTTTCTAAGTCATTTTATTGCATCCTGTGTTCACATTGCTCTTACTATT
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 220841 40 -   2853901 ------------------GTAATTTGATTCCATCATTTGTTCACATTGC-CATACTAtt
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             502311 40 -   3282555 ------------------GTGATTTTATTCCATCATTTGTTCACATTGC-CATACTAtt
i saiBol1.JH378276          C 0 C 0
s proCoq1.NW_012149419v1       641711 59 -   2566024 ATAGTTTGTATGTCCTAAGTTGTTTTATTCCATCTTTTGTTCACATTACCCTTACTGTT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6758543 50 -  36342412 GTAGTTTGTTTTGCCCAAGTGGTCTTATCCTATCTTTTGTTCACATTACT---------
i otoGar3.GL873530          C 0 I 26
s canFam3.chr30                 44408 43 -  40214260 ATAGTTTGTATTTCCTAAGTGCTTTGATTCCATCTTTTGTTCA----------------
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e aotNan1.NW_018511953v1       733760 62 -   3745603 I
e mm10.chr9                  55172406 177 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cebCap1.NW_016107979v1       288120 62 -   1024465 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=24836.000000
s hg38.chr15_KI270850v1_alt    185936 9 +    430880 AAAACTTTT
s panTro5.chr15              17995572 9 -  83230942 AAAACTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17221888 9 -  99763055 AAAACTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       284535 9 +    378907 AAAACTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102140090 9 + 121039945 GAAACTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60350235 9 + 169600520 AAAATTTTT
i rheMac8.chr7              C 0 I 12
s macNem1.NW_012011056v1      5347051 9 -   6271500 AAAACTTTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1805948 9 -   1987038 GAAACtttt
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 220881 8 -   2853901 aaactttt-
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             502351 8 -   3282555 aaactttt-
i saiBol1.JH378276          C 0 C 0
s proCoq1.NW_012149419v1       641770 9 -   2566024 AAAACTTCT
i proCoq1.NW_012149419v1    C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e aotNan1.NW_018511953v1       733760 62 -   3745603 I
e mm10.chr9                  55172406 177 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e canFam3.chr30                 44451 0 -  40214260 C
e cebCap1.NW_016107979v1       288120 62 -   1024465 I
e otoGar3.GL873530            6758593 26 -  36342412 I
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=18800.000000
s hg38.chr15_KI270850v1_alt    185945 4 +    430880 TATT
s panTro5.chr15              17995581 4 -  83230942 TATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17221897 4 -  99763055 TATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       284544 4 +    378907 TATT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102140099 4 + 121039945 TATT
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      5347060 4 -   6271500 TGTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1805957 4 -   1987038 tatt
i cerAty1.NW_012002657v1    C 0 I 9
s calJac3.chrY                 220889 4 -   2853901 tatt
i calJac3.chrY              C 0 I 10
s saiBol1.JH378276             502359 4 -   3282555 tatt
i saiBol1.JH378276          C 0 I 10
s proCoq1.NW_012149419v1       641779 4 -   2566024 TATT
i proCoq1.NW_012149419v1    C 0 I 463
s canFam3.chr30                 44451 4 -  40214260 TATT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e aotNan1.NW_018511953v1       733760 62 -   3745603 I
e mm10.chr9                  55172406 177 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cebCap1.NW_016107979v1       288120 62 -   1024465 I
e otoGar3.GL873530            6758593 26 -  36342412 I
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac8.chr7               60350244 12 + 169600520 I

a score=2781.000000
s hg38.chr15_KI270850v1_alt    185949 2 +    430880 Tg
s panTro5.chr15              17995585 2 -  83230942 Tg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17221901 2 -  99763055 Tg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       284548 2 +    378907 Tg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102140103 2 + 121039945 Tg
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      5347064 2 -   6271500 gg
i macNem1.NW_012011056v1    C 0 C 0
s canFam3.chr30                 44455 2 -  40214260 TG
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       641783 463 -   2566024 I
e aotNan1.NW_018511953v1       733760 62 -   3745603 I
e mm10.chr9                  55172406 177 + 124595110 I
e calJac3.chrY                 220893 10 -   2853901 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cebCap1.NW_016107979v1       288120 62 -   1024465 I
e otoGar3.GL873530            6758593 26 -  36342412 I
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e cerAty1.NW_012002657v1      1805961 9 -   1987038 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac8.chr7               60350244 12 + 169600520 I
e saiBol1.JH378276             502363 10 -   3282555 I

a score=349810.000000
s hg38.chr15_KI270850v1_alt    185951 272 +    430880 cccggcatggtggcttatgcctgtaatcccagcactttgggaggccaaggcaggtgaatgacctgagattgggagttcgagaccagcctgatcaacatggagagagcccgtctctactaaaagtacaaaaattagctgggcatggtggtgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggagacagaggttgcagtgagctgagatcacgccactgcactccagcctgggcaacaagagtgaaa
s panTro5.chr15              17995587 272 -  83230942 cctggcatggtggcttatgcctgtaatcccagcactttgggaggccaaggcaggtggatgacctgaggttgggagttcgagaccagcctgaccaacatggagagagcccgtctctactaaaaatacaaaaattagctgggcatggtggtgcacgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggagacagaggttgcagtgagctgagatcatgccactgcactccagcctgggcaacaagagcaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17221903 272 -  99763055 cctggcatggtggcttatgcctgtaatcccagcactttgggaggccaaggcaggtggatgacctgaggttgggagttcgagaccagcctgaccaacatggagagagcccgtctctactaaaaatacaaaaattagctgggcatggtggtgcacgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggagacagaggttgcagtgagctgagatcatgccactgcactccagcctgggcaacaagagcaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       284550 271 +    378907 cccggcatggtggcttatgcctgtaatcccagcactttgggaggccaaggcaggtgaatgacctgaggttgggagttcgagaccagcctgatcaacatggagagagcccgtctctactaaaagtacaaaaattagctgggcgtggtggtgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccggg-gacagaggttgcagtgagctgagatcacgccactgcactccagcctggacaacaagagtgaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102140105 272 + 121039945 cccggcatggtggtttatgcctgtaatcccagcactttgggaggcgaaggcaggtggatgacctgaggttgagagttcgagaccagcctgaccaacatggagagagcccgtctctactaaaaatacaaaaattagctgggcgtggtggtgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggagacggaggttgcagtgagctgaggtcgcgccacagcactccagtctgggcaacgagagcgaaa
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      5347066 272 -   6271500 ccaggcatggtggctcacgcctgtaatcccagtattttgggaggccaaggcaagtggatcacctgaggtcaggagtttgagaccagcctgaccaacatggagatagcccatctctacgaaaaatacaagaactagccaggtgtgatggtgcatgcctataatcccagctactcgggaggctgaagcaggagaatcgcttgaacccagaagacagaggttgcagtaagctgagaccatgccactgcacttaagcctggaaaacaagagcaaaa
i macNem1.NW_012011056v1    C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       641783 463 -   2566024 I
e aotNan1.NW_018511953v1       733760  62 -   3745603 I
e mm10.chr9                  55172406 177 + 124595110 I
e calJac3.chrY                 220893  10 -   2853901 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e canFam3.chr30                 44457   0 -  40214260 C
e cebCap1.NW_016107979v1       288120  62 -   1024465 I
e otoGar3.GL873530            6758593  26 -  36342412 I
e colAng1.NW_012118866v1       727100   0 -    764599 I
e manLeu1.NW_012105520v1       297089   1 -   1458659 I
e chlSab2.chr29              21063692   1 -  24206276 I
e cerAty1.NW_012002657v1      1805961   9 -   1987038 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac8.chr7               60350244  12 + 169600520 I
e saiBol1.JH378276             502363  10 -   3282555 I

a score=10478.000000
s hg38.chr15_KI270850v1_alt    186223 27 +    430880 ttccacctcaaaaaaaaaaaaaaaaaa
s panTro5.chr15              17995859 15 -  83230942 ctccacctc------------aaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17222175 14 -  99763055 ctccacctc-------------aaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       284821 24 +    378907 ttccacctc---aaaaaaaaaaaaaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102140377 22 + 121039945 ctccacctc-----aaaaaaaaaaaaa
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      5347338 22 -   6271500 ctccattaa-----aaaaaaaaacaaa
i macNem1.NW_012011056v1    C 0 C 0
s canFam3.chr30                 44457 19 -  40214260 TTCTATTTC-----ACAAGAAAAA---
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       641783 463 -   2566024 I
e aotNan1.NW_018511953v1       733760 62 -   3745603 I
e mm10.chr9                  55172406 177 + 124595110 I
e calJac3.chrY                 220893 10 -   2853901 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cebCap1.NW_016107979v1       288120 62 -   1024465 I
e otoGar3.GL873530            6758593 26 -  36342412 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e cerAty1.NW_012002657v1      1805961  9 -   1987038 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac8.chr7               60350244 12 + 169600520 I
e saiBol1.JH378276             502363 10 -   3282555 I

a score=4929.000000
s hg38.chr15_KI270850v1_alt    186250 5 +    430880 aaaaa
s panTro5.chr15              17995874 5 -  83230942 aaaaT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17222189 5 -  99763055 aaaaT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       284845 5 +    378907 aaaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102140399 5 + 121039945 aaaaT
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      5347360 5 -   6271500 aaaac
i macNem1.NW_012011056v1    C 0 I 39
s otoGar3.GL873530            6758619 5 -  36342412 agtat
i otoGar3.GL873530          I 26 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       641783 463 -   2566024 I
e aotNan1.NW_018511953v1       733760 62 -   3745603 I
e mm10.chr9                  55172406 177 + 124595110 I
e calJac3.chrY                 220893 10 -   2853901 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e canFam3.chr30                 44476 0 -  40214260 C
e cebCap1.NW_016107979v1       288120 62 -   1024465 I
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e cerAty1.NW_012002657v1      1805961 9 -   1987038 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac8.chr7               60350244 12 + 169600520 I
e saiBol1.JH378276             502363 10 -   3282555 I

a score=2552.000000
s hg38.chr15_KI270850v1_alt    186255 1 +    430880 G
s panTro5.chr15              17995879 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17222194 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       284850 1 +    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102140404 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60350256 1 + 169600520 G
i rheMac8.chr7              I 12 C 0
s macNem1.NW_012011056v1      5347404 1 -   6271500 g
i macNem1.NW_012011056v1    I 39 C 0
s cerAty1.NW_012002657v1      1805970 1 -   1987038 g
i cerAty1.NW_012002657v1    I 9 C 0
s otoGar3.GL873530            6758624 1 -  36342412 a
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       641783 463 -   2566024 I
e aotNan1.NW_018511953v1       733760 62 -   3745603 I
e mm10.chr9                  55172406 177 + 124595110 I
e calJac3.chrY                 220893 10 -   2853901 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e canFam3.chr30                 44476 0 -  40214260 C
e cebCap1.NW_016107979v1       288120 62 -   1024465 I
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e saiBol1.JH378276             502363 10 -   3282555 I

a score=942308.000000
s hg38.chr15_KI270850v1_alt    186256 164 +    430880 -----ACATGTATTGaaattatgtaaaacataagcttagtgtaacatatagttagagcgagtacttgggaactaatacctagccagcaccaaggtgaagagaaggcacattgcttgcactacagaaaccttctgcaggctgcttcctgatcac----catgcctctgtacg-ct
s panTro5.chr15              17995880 164 -  83230942 -----ACATGTATTGaaattatgtaaaacataagcttagtgtaacatatagttagagcgagtacttgggaactaatgcctagccagcaccaaggtgaagagaaggcacactgcttgcactacagaaaccttctgcaggctgcttcctgatcac----catgcctctgtacg-ct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17222195 164 -  99763055 -----ACATGTATTGAAATTATGTAAAACATAAGCTTAGTGTAACATATAGTTAGAGCGAGTACTTGGGAACTAATGCCtagccagcaccaaggtgaagagaaggcacactgcttgcactacagaaaccttctgcaggctgcttcctgatcac----catgcctctgtacg-ct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       284851 164 +    378907 -----ACATGTATTGaaattatgtaaaacataagcttagtgtaacatatagttagagcgagtacttgggaactaatgcctagccagcaccaaggtgaagagaaggcacattgcttgcactacagaaaccttctgcaggctgcttcccaatcac----catgcctctgtacg-ct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102140405 164 + 121039945 -----ACATGTATTGAAATTATGTAAAACATAAGCTTAGTGTAACATACAGTTAGAGCAAGTAGTTGGgaactaacacctagccagcaccaaggcgaagagaaggcaccttgcttgcactacagaaaccttctgcaggctgcttcctgatcac----catgcctctgtatg-ct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60350257 164 + 169600520 -----ACATGTATTGAAATTATGTGAAACGTAAGCTTAGTGTAACATATAGTTAGAGTGAGTATTTGGGAACTaacacctagccagcaccaaggtgaagagaaggcacattgcttgcactacagaaaccttctgcaggctgcttcctgatcgc----cgtgcctctgtacg-gt
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5347405 165 -   6271500 -----acatgtattgaaattatataaaacataagcttagtgtaacatatagttagagtcagtacttgggaaccaacacctagccagcaccgaggtgaagagaaggcacattgcttgcactacagaaaccttctgcaggctgcttcccaatcac----catgcctctgcacactt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1805971 164 -   1987038 -----acatgtattgaaattatgtgaaacgtaagcttagtgtaacatatagttagagtgagtatttgggaactaacacctagccagcaccaaggtgaagagaaggcacattgcttgcactacagaaaccttctgcaggctgcttcctgatcgc----CGTGCCTCTGTACG-CT
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 220903 160 -   2853901 -----acatgtactgaaaatatgtaaaacttaagcttagtgtaacacataattagagtgaatacttgagaaccaacagctagccaccacttaggtgaagagaaggcacgttactagcactgcagaaactttctgcaggctccttcccgatcat------tgtctctg--cg-ct
i calJac3.chrY              I 10 C 0
s saiBol1.JH378276             502373 162 -   3282555 -----acatgtattgaaaatatgtaaaacttaagcttagtgtaacacataattagagtgaatacttgagaaccaacagctggccaccatgtaggtgaagagaaggcacattgctagcactacagaaactttccgcaggctgcttcccgatcAT------TGTCTCTGTACG-CT
i saiBol1.JH378276          I 10 C 0
s cebCap1.NW_016107979v1       288182 157 -   1024465 -----acatgtattgaaaatatgtaaaacttaagcttagtgtaacaca----tagagtgaatatttgagaaccaacagctagccaccacttaggtgaagagaa-gcacgtggctagcactacagaaactgtctgcaggctgcttcccgttcAT------TGTCTCCGTACG-CT
i cebCap1.NW_016107979v1    I 62 C 0
s aotNan1.NW_018511953v1       733822 162 -   3745603 -----acatgtattgaaaatatgtaaaacttaagcttagtgtaatacataattagagtgaatacttgagaaccagcagctagccaccacttaggtgaggagaaggcacattgctagcactacggaaactttctgcaggctgcttcccgatcAT------TGTCTCTGTACG-CT
i aotNan1.NW_018511953v1    I 62 C 0
s otoGar3.GL873530            6758625 154 -  36342412 -----acatgtattcaaaatatgtaaaacacaaggttagtgtaac--------agagtgaatacctggagac-atcacctacctcccacccaggtagagaaacaggacattgttagcagtatagaaatcgtctgaaggctccttacaggttat----cttacctctggatg--t
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 44476 144 -  40214260 GTTTTATATGTATTGaaaacata--------------------------agttacagtgaatacttgggaactaccacccagct-ccacccaggtgaagaaacacaatattgctagcact--agaagccttttgcaggctctttccagatgatggatcattcccttctgtg-ct
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       641783 463 -   2566024 I
e mm10.chr9                  55172406 177 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100   0 -    764599 I
e manLeu1.NW_012105520v1       297089   1 -   1458659 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=1608230.000000
s hg38.chr15_KI270850v1_alt    186420 272 +    430880 catcttgccttatatttctctagtgttatcactcatata--tgcatccttcaacaatacggtgtagtgttgcctattgtttgaactt-----ttgaaaatcatactata--tgtattttttcatatct---ttgttgtgctcaacattgtgtgtgaaatttgttcccattgtgtgt-agttatagttcttttgcattgctgtatttactccattgtttgaatatacc----ataccatttatccccttgactaga-taca------------------gaca--tgtgggttgt---------------------------------------------ttccag-----------tgttattagg
s panTro5.chr15              17996044 272 -  83230942 catcttgccttatgtttctctagtgttatcactcatata--tgcatccttcaacaatacggtgtagtgttgcctattatttggactt-----ttgaaaatcacagtata--tgtattttttcatatct---tcgttgtgctcaacgttgtgtgtgaaatttgttcctattgtgtgt-agctatagttcttttgcattgctgtatttactccattgtttgaatacacc----ataccatttatccccttgactaga-taca------------------gaca--tgtgggtggt---------------------------------------------ttccag-----------tgttattagg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17222359 272 -  99763055 catcttgccttatgtttctctagtgttatcactcatata--tgcatccttcaacaatacggtgtagtgttgcctattatttggactt-----ttgaaaatcacagtata--tgtattttttcatatct---tcgttgtgctcaacgttgtgtgtgaaatttgttcctattgtgtgt-agctatagttcttttgcattgctgtatttactccattgtttgaatacacc----ataccatttatccccttgactaga-taca------------------gaca--tgtgggtggt---------------------------------------------ttccag-----------tgttattagg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       285015 272 +    378907 catcttgccttatgtttctctagtgttatcactcatata--tgcatccttcaacaatatggtgtagtgttgcctattgtttgaactt-----ttgaaaatcatactata--tgtattttttcatatct---ttgttgtgctcaacattgtgtgtgaaatttgttcccattgtgtgt-agttatagttcttttgcattgctgtatttactccattgtttgaatatacc----ataccatttatccccttgactaga-taca------------------gaca--tgtgggttgt---------------------------------------------ttccag-----------tgttattagg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102140569 270 + 121039945 catcttgccttatgtttctctagtgttatcactcatgta--tgcatccttcaacaatacagtgtagtgttgcctattgtttgaactt-----ttgaaaatcatactgta--tgtattttttcatatct---ttgttgtgctcaacattgtgtgtgaaatttgttcctattgtgtgt-agctatagttcttctgcattgctgtatttactccattgtttgaatacgcc----ctaccatttatccccttgactaga-taca------------------gaca----tgggttgt---------------------------------------------ttccag-----------tgttattagg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60350421 266 + 169600520 catcttgccttatgtttctctagtgttatcactcacgta--tgcatccttgaacaatacagtgtagtgttgccttttgtttga---t-----tcgaaaatcatactata----tattttttcagatct---ttgttgtactcaatattgtatgtgaaatttgttcctattgtgcgt-agctata-ttcttttgctttgctgtatttactccattgtttgaatacacc----ataccatttatccccttgactaga-taca------------------gaca--tgtgggttgt---------------------------------------------ttccag-----------tgttattagg
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5347570 272 -   6271500 catcttgccttctgtttctctagtgttatcactcatgta--tgcatccttgaacaatacagtgtagtgttgcctattgtttgaactt-----ttgaaaatcatactata--tgtattttttcatctct---tcgttgtgctcaacattgtgtatgaaatttgttcctattgtgtgt-agctatagttcttttgcattgctgtatttattccattgtttgaaaacacc----ataccatttattccctagactaga-taca------------------gaca--cgtgggttgt---------------------------------------------ttccca-----------tgttattagg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1806135 266 -   1987038 CATCttgccttatgtttctctagtgttatcactcacgta--tgcatccttgaacaatacagtgtagtgttgccttttgtttga---t-----tcgaaaatcatactata----tattttttcagatct---ttgttgtactcaatattgtatgtgaaatttgttcctattgtgcgt-agctata-ttcttttgctttgctgtatttactccattgtttgaatacacc----ataccatttatccccttgactaga-taga------------------gaca--tgtgggttgt---------------------------------------------ttccag-----------tgttattagg
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 221063 272 -   2853901 catctttccttacgtttctctagtgttatcactcatgta---gcatccttgaaaaatacagtgtagtgctgcctattgttcgaactt-----ttgaaaatcatactata--tgtgttttttcatgtct---tggtcgtgctcaacacttagtgtgaaatttgttcatattgtgtgt-agctgtagttcttttgcattgctgtatttattccattgtttgaatacatc----ataccatttatccccttgactatattaca------------------gaca--tgtgggttgt---------------------------------------------ttccag-----------cgttatttgg
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             502535 272 -   3282555 CATCtttccttatgtttctctggtgttaacactcacgta--tacatccttgaaaagtgcagtgtagtgctgcctgttgttcgaactt-----ctgaaaatcatactata--tgtattttttcatgtcc---tggttgtactcaacatttagtgtgaaatttgttcatattgtgtgt-agccatagttcttttgcattgctgtatttattccatcgtttgagtacatc----ataccatttctccccttgactata-taca------------------gaca--tgtgggttgt---------------------------------------------ttccag-----------cattatttgg
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       288339 271 -   1024465 CATCtttccttatgtttccctagtgttatcactcatgta--tgcatccttgaaaaatacagtgtagtgctgcctattgttcgaactt-----ttgaaaatcatactaca--tgtattttttcatgcat---tggttgtgctcaacatttcgtgtgaaatttgttcatattgtgtgt-agctata-ttcttttgcgttgctgtatttattccattgtttgaatacatc----ataccatttatcccctagactata-taca------------------gaca--ttcgggttgt---------------------------------------------ttccag-----------cattatttgg
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       733984 268 -   3745603 CATCtttccttatgtttctctagtgttatcactcatgta--tgcatccttgaaggatacagtttagtg----ctattgttcgaactt-----ttgaaaatcatgctgta--tgtgttttttcatgtct---tggttgtgcttaacattcagtgtgaaatttgttcatattgtgtgt-agctatagttcttttgcattgctgtatttattccattgtttgaatacata----ataccatttatccccttgactata-taca------------------gaca--tgtgggttgt---------------------------------------------ttccag-----------cgttatttgg
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6758779 264 -  36342412 ctctgtaccttacttttctcta--tttatcactcacgta--tgcatccctgaatgatacggtttggtgttgcctgt----------t-----tccaagattctgttgta--cgtg---tttcccatct---tttttgtgcgcagc--tttgtggggaaattgttcatcttgtgtgtaagctata---ctttttcattactgtatttattccattgtttggctataccataaataacatttatccatttgactgtaatata------------------aaca--tttggggtgt---------------------------------------------tttcaattttt-----ttgctattagg
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55172583 237 + 124595110 CATCTGTCCTTACTTTCCTCTGACTTTATCCTTCATGCG--TGCTTACTT---CTGTATAGTTTAGTGTTGCCTGT--ATTGAGC-T-----TTAAGAGTCACACTATA----TATATTGGCATGTTT---TCTTTgca-----------------------------------gt---------tccttttttattgctatgttcatttcgttgttcaaaaagatgaga-atgcccattttccacttgagtgtt-gata------------------gataatggtaggctgt---------------------------------------------ttctagttttttgatctttttgtttgg
i mm10.chr9                 I 177 I 14
s canFam3.chr30                 44620 337 -  40214260 aatcttttcct---tttccctagttttgtcacatatctatctgcatctctgaacaagatggtttagtgttgactgtttttttaagcttcatattaagagtcgtactatatgtgtattctttctcatttgtctttttttgcttgacattgtgtgttaaacttattctttttagctgt-ag--------gtttttcattgctgtatttgttccattgtttgaatatacc----ataacgtttatccattggagttgattgcagttttaggaatagtgtggggca--cctgggtggtgcagttgggtaagcagccacttcttggttttagctcaggtcaggatctcag-----------ggttgtgagg
i canFam3.chr30             C 0 I 152
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       641783 463 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100   0 -    764599 I
e manLeu1.NW_012105520v1       297089   1 -   1458659 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=127546.000000
s hg38.chr15_KI270850v1_alt    186692 22 +    430880 aacagtgattgctgctgtggtc
s panTro5.chr15              17996316 22 -  83230942 aacagcgattgctgctgtggtc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17222631 22 -  99763055 aacagcgattgctgctgtggtc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       285287 22 +    378907 aacagtgattgctgctgtggtc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102140839 22 + 121039945 aacagcgactgctgctatggtc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60350687 22 + 169600520 aacagtgaatgctgctatgatc
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5347842 22 -   6271500 aagagcaaatgctgctatgatc
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1806401 22 -   1987038 aacagtgaatgctgctatgatc
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 221335 22 -   2853901 aatagcgaatgctgctatgatc
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             502807 22 -   3282555 aatagcgaatgctgctgtgatc
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       288610 22 -   1024465 aatagcgaatgctgctgtgatc
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       734252 22 -   3745603 aatagcgaatgctgctgtgatc
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6759043 18 -  36342412 aatag----tcttactatgatt
i otoGar3.GL873530          C 0 I 42
s mm10.chr9                  55172834 18 + 124595110 aagag----tcctactgtggat
i mm10.chr9                 I 14 C 0
s canFam3.chr30                 45109 20 -  40214260 aacagtc--tgctgccatgatc
i canFam3.chr30             I 152 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       641783 463 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=938024.000000
s hg38.chr15_KI270850v1_alt    186714 115 +    430880 attcttgtctgtatttcatggtatccttgtgccagcatttctctggggcacatactt----aggagttggatgactgaggcatgaggATCAATTTCT---TCTTTTACCCAAGAGTTATCTA
s panTro5.chr15              17996338 115 -  83230942 attcttgtctgtatttcatggtacccttgtgccagcatttctctggggctcatactt----aggagttggatgactgaggcatgaggatcaatttct---tcttttacCCAAGAGTTATCTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17222653 115 -  99763055 attcttgtctgtatttcatggtacccttgtgccagcatttctctggggctcatactt----aggagttggatgactgaggcatgaggATCAATTTCT---TCTTTTACCCAAGAGTTATCTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       285309 115 +    378907 attcttgtctgtatttcatggtatccttgtgccagcatttctctggggcacatactt----aggagttggatgactgaggcatgaggATCAATTTCT---TCTTTTACCCAAGAGTTATCTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102140861 115 + 121039945 attcttgtctgtatttcatggtacccttgtgccagcatttctctggggcacatactt----aggagttcgatgactgaggcatgaggATCAATTTCT---TCTTTTACCCAAGAGTTATCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60350709 115 + 169600520 attcttgtctgtatttcatggtacccctgtgccagcatttctctggggcacatactt----aggggttggatgactgACACATGAGGATCAATTTCT---TCTCTTACCCAAGAGTTATCTA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5347864 115 -   6271500 attttaatctatattcaatggtacccctgtgccagcatttctctggggcacgtactt----aggagttggatgactgaggcatgaggatcaatttct---tcttttacCCAAGACTTATCCA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1806423 115 -   1987038 attcttgtctgtatttcatggtacccctgtgccagcatttctctggggcacatactt----aggggttggatgactgACACATGAGGATCAATTTCT---TCTCTTACCCAAGAGTTATCTA
i cerAty1.NW_012002657v1    C 0 I 309
s calJac3.chrY                 221357 115 -   2853901 attcttgtctgtatttcatggtacccctgtgccagcatttctctggggtacatactt----aggaattggatgactggggcatgaggATCAATTGCT---TCTTTTACCCCAGCATTATGTA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             502829 114 -   3282555 attcttgtctgtatttcatggtacccctgtgccagcatttctctggggcacatac-t----aggaattggatgactggggcatgaggATCAATTGCT---TCTTTTACCCCAGAGTTATCTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       288632 114 -   1024465 attcttgtctatatttcatggtacccc-gtgccagaatttctctggggcacatactt----aggaattagatgactggggcatgaggATCAATTGCT---TCTTTTACCCCAGAGTTATCTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       734274 115 -   3745603 attcttgtctgtatttcatgatacccctgtgccagcatttctctggggcacatactt----aggaattggatgactggggcatgaggATCAATTGCT---TCTTTTACCCCAGAGTTATCTA
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       642246 112 -   2566024 atttttgtctgtatttcatggtacccctgtgcaagcatgtctctggggcacatactt-------agttggattattggggcatgaggATCAATTTCT---TCTTTAACCCAAGATTTATCTA
i proCoq1.NW_012149419v1    I 463 C 0
s otoGar3.GL873530            6759103 117 -  36342412 tttcttgtccatgtgtcatgatg-ccttgtgtaaacatttctcc-aggcacatacttaggaaggagttgggttactagggcatgAGGATGAATTTCT---TCTTTAGCCTAAGATTTTTCTA
i otoGar3.GL873530          I 42 C 0
s mm10.chr9                  55172852 114 + 124595110 tttcttgtttgtatttctggatactcttgtgcagtcatttctctggggtacatactt----agg----gggttgctttgctaggATTATCTCTCTCTCTCTCTCAGACCTAAGAGTTATCTA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 45129 114 -  40214260 attcttgtccatattttgtgggatacttgtgcaagtgtttttct-gggcacatactt----agaagttggattaccggggcatgagggtCAATTTCT---TCTTAAATTTAAGAGTTCTTAA
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100   0 -    764599 I
e manLeu1.NW_012105520v1       297089   1 -   1458659 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=8666.000000
s hg38.chr15_KI270850v1_alt    186829 1 +    430880 G
s panTro5.chr15              17996453 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17222768 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       285424 1 +    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102140976 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60350824 1 + 169600520 A
i rheMac8.chr7              C 0 I 1
s macNem1.NW_012011056v1      5347979 1 -   6271500 G
i macNem1.NW_012011056v1    C 0 I 1
s calJac3.chrY                 221472 1 -   2853901 G
i calJac3.chrY              C 0 I 1
s saiBol1.JH378276             502943 1 -   3282555 G
i saiBol1.JH378276          C 0 I 1
s cebCap1.NW_016107979v1       288746 1 -   1024465 G
i cebCap1.NW_016107979v1    C 0 I 1
s aotNan1.NW_018511953v1       734389 1 -   3745603 G
i aotNan1.NW_018511953v1    C 0 I 1
s proCoq1.NW_012149419v1       642358 1 -   2566024 G
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6759220 1 -  36342412 G
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55172966 1 + 124595110 G
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 45243 1 -  40214260 G
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e cerAty1.NW_012002657v1      1806538 309 -   1987038 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=25884.000000
s hg38.chr15_KI270850v1_alt    186830 4 +    430880 AAAA
s panTro5.chr15              17996454 4 -  83230942 AACA
i panTro5.chr15             C 0 I 9
s panPan2.chr15              17222769 4 -  99763055 AACA
i panPan2.chr15             C 0 I 9
s gorGor5.CYUI01015946v1       285425 4 +    378907 AACA
i gorGor5.CYUI01015946v1    C 0 I 9
s nomLeu3.chr6              102140977 4 + 121039945 AAAA
i nomLeu3.chr6              C 0 I 12
s rheMac8.chr7               60350826 4 + 169600520 AAAA
i rheMac8.chr7              I 1 I 314
s macNem1.NW_012011056v1      5347981 4 -   6271500 AAAA
i macNem1.NW_012011056v1    I 1 I 18
s cerAty1.NW_012002657v1      1806847 4 -   1987038 aaaa
i cerAty1.NW_012002657v1    I 309 I 5
s calJac3.chrY                 221474 4 -   2853901 AAAA
i calJac3.chrY              I 1 I 19
s saiBol1.JH378276             502945 4 -   3282555 AAAA
i saiBol1.JH378276          I 1 I 18
s cebCap1.NW_016107979v1       288748 4 -   1024465 GAAA
i cebCap1.NW_016107979v1    I 1 I 19
s aotNan1.NW_018511953v1       734391 4 -   3745603 AAAA
i aotNan1.NW_018511953v1    I 1 I 16
s proCoq1.NW_012149419v1       642359 4 -   2566024 GAAA
i proCoq1.NW_012149419v1    C 0 I 355
s otoGar3.GL873530            6759221 4 -  36342412 GGAA
i otoGar3.GL873530          C 0 I 8
s mm10.chr9                  55172967 3 + 124595110 -ACA
i mm10.chr9                 C 0 I 7
s canFam3.chr30                 45244 4 -  40214260 AAAA
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=-441.000000
s hg38.chr15_KI270850v1_alt    186834 5 +    430880 --------AAAAA
s panTro5.chr15              17996467 5 -  83230942 --------AAAAA
i panTro5.chr15             I 9 C 0
s panPan2.chr15              17222782 5 -  99763055 --------AAAAA
i panPan2.chr15             I 9 C 0
s gorGor5.CYUI01015946v1       285438 5 +    378907 --------AAAAA
i gorGor5.CYUI01015946v1    I 9 C 0
s nomLeu3.chr6              102140993 5 + 121039945 --------AAAAA
i nomLeu3.chr6              I 12 C 0
s otoGar3.GL873530            6759233 5 -  36342412 --------ATAAA
i otoGar3.GL873530          I 8 C 0
s mm10.chr9                  55172977 4 + 124595110 --------ACAA-
i mm10.chr9                 I 7 I 1
s canFam3.chr30                 45248 9 -  40214260 ATTTTTTTA----
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642363 355 -   2566024 I
e aotNan1.NW_018511953v1       734395 16 -   3745603 I
e calJac3.chrY                 221478 19 -   2853901 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cebCap1.NW_016107979v1       288752 19 -   1024465 I
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e cerAty1.NW_012002657v1      1806851 5 -   1987038 I
e macNem1.NW_012011056v1      5347985 18 -   6271500 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac8.chr7               60350830 314 + 169600520 I
e saiBol1.JH378276             502949 18 -   3282555 I

a score=4702.000000
s hg38.chr15_KI270850v1_alt    186839 2 +    430880 GC
s panTro5.chr15              17996472 2 -  83230942 GC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17222787 2 -  99763055 GC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       285443 2 +    378907 GC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102140998 2 + 121039945 GC
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      5348003 2 -   6271500 GC
i macNem1.NW_012011056v1    I 18 C 0
s cerAty1.NW_012002657v1      1806856 2 -   1987038 GC
i cerAty1.NW_012002657v1    I 5 C 0
s calJac3.chrY                 221497 2 -   2853901 AC
i calJac3.chrY              I 19 C 0
s saiBol1.JH378276             502967 2 -   3282555 AC
i saiBol1.JH378276          I 18 C 0
s cebCap1.NW_016107979v1       288771 2 -   1024465 AC
i cebCap1.NW_016107979v1    I 19 C 0
s aotNan1.NW_018511953v1       734411 2 -   3745603 AC
i aotNan1.NW_018511953v1    I 16 C 0
s otoGar3.GL873530            6759238 2 -  36342412 AC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55172982 1 + 124595110 A-
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 45257 2 -  40214260 AC
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642363 355 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac8.chr7               60350830 314 + 169600520 I

a score=588022.000000
s hg38.chr15_KI270850v1_alt    186841 101 +    430880 ATTTTCAGGTGGCTTTTGAGGTGTTTTTAGTGCATCAGTGTGGTCAGAGAATATGGCCTGTGACCTTTCAGCGAGATTATCAGCAATCATTTAGACTTCAC
s panTro5.chr15              17996474 101 -  83230942 ATTTTCAGGTGGCTTTTGAGGTATTTTTCGTGCATCAATATGGTCAGAGAATATGGCCTGTGACCTTTCAGTGAGATTTTCAGCAATCATTTAGACTTCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17222789 101 -  99763055 ATTTTCAGGTGGCTTTTGAGGTATTTTTCGTGCATCAATATGGTCAGAGAATATGGCCTGTGACCTTTCAGTGAGATTTTCAGCAATCATTTAGACTTCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       285445 101 +    378907 ATTTTCAGGTGGCTTTTGAGGTGTTTTTAGTGCATCAGTATGGTCAGAGAATATGGCCTGTGACCTTTCAGCGAGATTATCAGCAATCATTTAGACTTCAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141000 100 + 121039945 ATTTTCAGGTGGTTTTTGAGGTATTTTTAGTGCATCAATATGGTCAGAGAATATGGCCTGTGACCTTTCAGC-AGATTATCAGCAATCATTTGGACTTCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60351144 101 + 169600520 ATTTTCAGGTGGCTTTTAAATTATTTTTAGTGCATCAGTATGGTCAGAGAGTATGGCCTGTGACCTTTCAGCTAGATTATCAGCAATAATTTACACTTCAC
i rheMac8.chr7              I 314 C 0
s macNem1.NW_012011056v1      5348005 101 -   6271500 ATTTTCAGGTGGTTTTTGAGGTATTTTAAGTGCATCAATATGGTCAGAGAATTTGGCCTGTGACCTTTCAGCTAGATTATCAGCAATCATTTAGACTTCAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1806858 101 -   1987038 ATTTTCAGGTGGCTTTTAAATTATTTTTAGTGCATCAGTATGGTCAGAGAGTATGGCCTGTGACCTTTCAGCTAGATTATCAGCAATCATTTACACTTCAC
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 221499 101 -   2853901 ATTTTCAGGTGACTTTTCAGTTATTTTTAGTGCATCAATATGGTAAGAGAATATGGCCGGTCACCTTCCAGCTGCATTATCAGTGGTTGTTTAGACTACAT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             502969 101 -   3282555 ATTTTCAGGTGACTTTTGAGTTATTTTTAGTGCATCAATATGGTAAGAGAATATAACCGGTCACCTTTCAGCTGCATTATCAGCAGTTGTTTAGACTACAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       288773 101 -   1024465 ATTTTCAGGTGACTTTTGAGTTATTTTTAGTGCATCAATATGGTAAGATAATGTGGCTGGTCACCTGTCAGCTGCATTATCAGCAGTTGTTTAGACTACAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       734413 101 -   3745603 ATTTTCAGGTGACTTTTGAGTTATTTTTAGTGCATCAATATGGTAAGAGAATATCGCCGGTCACCTTTTAGCTGCATTATCAGCAGTTGTTTAGACTACAT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6759240  98 -  36342412 ATTTTTAGGTGGCTTCTAGG---TTTTTAGTTTGTCAATATGGTCAGAGACTATTGCCTATGACTTCTCAGCTGCTCTATCAGTAATTGCTGAGACTTAAC
i otoGar3.GL873530          C 0 I 116
s mm10.chr9                  55172983  69 + 124595110 CTTTTCAGGTGACTTTGGGTTACTCTTGTTTTTGTCAGTA----------------CATGTGACCTTGCA-----------AGTGATGGACTGACC-----
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 45259  97 -  40214260 ATTCGCAGATGGCATTTGGGCTATTTTTAGTTTTTCACTGTT----TACAATATGGCCTATAACTTCTCAGCTGAATTGTCAACAATTGCTTAAACTTAAC
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642363 355 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100   0 -    764599 I
e manLeu1.NW_012105520v1       297089   1 -   1458659 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=451616.000000
s hg38.chr15_KI270850v1_alt    186942 103 +    430880 TATTGGTGTTACTG-----------------TTGCCTTTGC--TTATTGCTACTTCTTGTATCATGT----CTCCTGCTCCCTGCCCCTCGAG--TATATCCCTGAATAATATCCTGGG--tttttg--------ttt
s panTro5.chr15              17996575  95 -  83230942 TATTGGTGTTACTG-----------------TTGCCTTTGC--TTATTGCT-CTTCTTGTATTATGT----CTCCTGCTCCCTGCCCCTCAAG--TATATCCCTGAATAATATCCTG---------G--------TTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17222890  94 -  99763055 TATTGGTGTTACTG-----------------TTGCCTTTGC--TTATTGCT-CTTCTTGTATTATGT----CTCCTGCTCCCTGCCCCTCAAG--TATATCCCTGAATAATATCCTG---------G---------TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       285546 103 +    378907 TATTGGTGTTACTG-----------------TTGCCTTTGC--TTATTGCTACTTCTTGTATTATGT----CTCCTGCTCCCTGCCCCTCGAG--TATATCCCTGAATAATATCCTGGG--tttttg--------ttt
i gorGor5.CYUI01015946v1    C 0 I 3
s nomLeu3.chr6              102141100 104 + 121039945 TATTGGTGTTACTG-----------------TTGCCTTTGC--TTATTGCTATTTCTTGTATTATGT----CTCCTGCTCCCTGCCCCTCAAG--TATATCCCTGAATAATATCCTGGGTTTTTTTG---------TT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60351245  98 + 169600520 TATTGGTGTTACTG-----------------TTGTCTTTGC--TTATTGCTACTTCTTGTATTATGT----CTCCTGCTCTCTGCCCCTCAGG--TATATCCCTGAATAATATCCTG---------G------CCTTT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5348106  95 -   6271500 -GTTGGCGTTACTG-----------------TTGTCTTTGC--TTATTGCTACTTCTTGTATTATGT----CTCCTGCTCCCTGCCCCTCAAG--TATATCCCTGAATAATATCCTG---------G--------GGG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1806959  97 -   1987038 TATTGGTGTTACTG-----------------TTGTCTTTGC--TTATTGCTACTTC-TGTATTATGT----CTCCTGCTCTCTGCCCCTCAGG--TATATCCCTGAATAATATCCTG---------G------GCTTT
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 221600  98 -   2853901 TATTGGTGTTACTG-----------------TTGTCTTTGC--TTATTAATGCTGCTTCTGTTACAT----CTCCTGCTCCCTGCCCGTCAAG--TATATCCATGAATAATATCCTG---------T------TTTGT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             503070  98 -   3282555 TATTGGTGTTACTG-----------------TTGTCTTTGC--TTCTTGCTGCTGCTTCTGTTACAT----CTCCTGCTCCCGGCCTGTCAAG--TATATCCATGAATAATATCCTG---------G------TTTTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       288874 104 -   1024465 TGTTGGTGTTACTG-----------------TTGTCTTTGC--TTATTACTGCTGCATCTGTTACAT----CTCCTGCTCCCTGCCTGTCAAA--TATATCCATGAATAATATCCTG---------Gttttttttttt
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       734514  99 -   3745603 TATTGGTGTTACTG-----------------TTGTCTTTGC--TTATTACTGCTGCTTCTGTTACAT----CTCCTGCTCCCTGCCCGTCAAA--TATATCCGTGAATAATATCCTG---------t-----tttttt
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6759454 120 -  36342412 tgctgggattacagctgtgagccaccataccTTGTCTTTTCTATTGTTGCCATTTCTTATATTTCATGGTCCCCCAGTACTCTGCCCTCCAAC--TATATTCCTAAATAA-ATACTC---------A------TTTTT
i otoGar3.GL873530          I 116 I 96
s mm10.chr9                  55173052  59 + 124595110 CGCTGCTGTCAGTG-----------------CTG---------TTACTGCTACTCCCTGGGGGATCC----CTCCAG--------------AG--TGTACTCTCG---------------------------------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 45356  92 -  40214260 CATTGGTATTATTA------------------GGTCTTTGC--TTATTGCTGTTTCTCATATTCCAT-----GGTTGCTTCCTAACTCTGAAAATAACATCCCTGAATGATGTCCTT---------------------
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642363 355 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100   0 -    764599 I
e manLeu1.NW_012105520v1       297089   1 -   1458659 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=109436.000000
s hg38.chr15_KI270850v1_alt    187045 18 +    430880 ttttttttttCCTAGAAA
s panTro5.chr15              17996670 18 -  83230942 TTTTTTTTTTCCTAGAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17222984 18 -  99763055 TTTTTTTTTTCCTAGAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       285652 18 +    378907 ttttttttttCCTAGAAA
i gorGor5.CYUI01015946v1    I 3 C 0
s nomLeu3.chr6              102141204 18 + 121039945 TTGTTTTTTTCCCAGAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60351343 18 + 169600520 TTTTTTTTTTCCTAGAAA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5348201 18 -   6271500 TTTTTTTTCCCCTAGAAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1807056 18 -   1987038 TTTTTTTTTTCCTAGAAA
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 221698 18 -   2853901 TTTGTTTTTTCCTGGAAA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             503168 18 -   3282555 TTTCCCCCCCTCTGGAAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       288978 18 -   1024465 tttttttCCCCCTGGAAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       734613 18 -   3745603 tttttttttttCTGGAAA
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       642718 17 -   2566024 TTTTTTTCTTCCTAGGA-
i proCoq1.NW_012149419v1    I 355 C 0
s otoGar3.GL873530            6759670 17 -  36342412 cttgtctctactaaaaa-
i otoGar3.GL873530          I 96 I 163
s mm10.chr9                  55173111 17 + 124595110 -TCTTGATTTCCTAGAAA
i mm10.chr9                 C 0 I 4
s canFam3.chr30                 45448 18 -  40214260 TATTTTCATTTCTAGAAA
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=257354.000000
s hg38.chr15_KI270850v1_alt    187063 37 +    430880 GGGTTTGTGGGGA---------TGTGTATGGAGTGTGTTCCATGA--A
s panTro5.chr15              17996688 37 -  83230942 GGGTTTGTGGGGA---------TGTGTATGGAGTGTGTTCTGTGC--A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223002 37 -  99763055 GGGTTTGTGGGGA---------TGTGTATGGAGTGTGTTCTGTGC--A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       285670 37 +    378907 GGGTTTGTGGGGA---------TGTGTATGGAGTGTGTTCCATGA--A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141222 37 + 121039945 GGGTTTGTGGGGA---------TGTATGTGGAGTGTGTTCTGTGA--A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60351361 37 + 169600520 GTGTTTGTGTGGG---------TGTGTATGGAGAGTGTTCCATGA--A
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5348219 37 -   6271500 GGGTTTGTGGGGA---------TGTGTATGGAGTGTGTTCCATGA--A
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1807074 37 -   1987038 GTGTTTGTGTGGG---------TGTGTATGGAGAGTGTTCCATGA--A
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 221716 39 -   2853901 GGGTCTGTGGGAA---------TGTGTATGGAGAGTGTTCCTTGAATA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             503186 39 -   3282555 GGGTCTGTGGGAA---------TGTGTATGGAGAGTGTTCCTTGAATA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       288996 39 -   1024465 GGGTCTGTGGGAA---------TGTGTATGGAGAGTGTTCCTTGAATA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       734631 39 -   3745603 GGGTCTGTGGGAA---------TGTGTATGGAGAGTGTTCCTTGAATA
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       642735 37 -   2566024 GGGTTTGTGGGAA---------TGTGTATGGAGAGTGTTCCTTGA--A
i proCoq1.NW_012149419v1    C 0 I 687
s otoGar3.GL873530            6759850 37 -  36342412 aGGTTTGTGGGAA---------TGTGTATGGAGAGTGCTCCTTGA--A
i otoGar3.GL873530          I 163 I 2
s mm10.chr9                  55173132 44 + 124595110 TGGTTTATGGAGATAGGTATGGTATGCATGGAGAGTGTTGTATA----
i mm10.chr9                 I 4 C 0
s canFam3.chr30                 45466 31 -  40214260 GGCTTTCTGGGAA---------TGTGTGTGGGAAGTGTTT--------
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=321045.000000
s hg38.chr15_KI270850v1_alt    187100 57 +    430880 CTTGCTGTCTGTTAtcatttgttcaacaaata----tttgactctgtataaagtactccat
s panTro5.chr15              17996725 57 -  83230942 CTTGCTGTCTGTTATCATTTGTtcaacaaata----tttgactctgtataaagtactccat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223039 57 -  99763055 CTTGCTGTCTGTTATCATTTGTtcaacaaata----tttgactctgtataaagtactccat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       285707 57 +    378907 CTTGCTGTCTGTTAtcatttgttcaacaaata----tttgactccgtataaagtactccat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141259 57 + 121039945 CTTGCTGTCTGTTAtcatttgttcaacaaata----tttgactctgtatgaagtactccat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60351398 57 + 169600520 CTTGCTGTCTGTTATCATTTGTTCAACAAATA----TCTGACTCTGTTTAAAGTACTCCAT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5348256 57 -   6271500 CTTGCTGTGTGTTAtcacttgttcaacaaata----tttgattctgtatgaaatactccat
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1807111 57 -   1987038 CTTGCTGTCTGTTATCATTTGTTCAATAAATA----TCTGACTCTGTTTAAAGTAGTCCAT
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 221755 55 -   2853901 CTTGCTGTCTGTTATCATTTGTTCGACAGATA-----CTGAGTCTGTGTAAAGTATTCCA-
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             503225 56 -   3282555 CTTGCTGTCTGTTATCATTTGTTCGACAGATA----TCTGAGTCTGTATAAAGTATTCCA-
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       289035 56 -   1024465 CTTGCTGTCTGTTATCATTTGTTCGACAGATA----TCTGAGTCTGTATAAAGTATTCCA-
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       734670 56 -   3745603 CTTGCTGTCTGTTATCATTTGTTCGACAGATA----TCTGAGTCTGTATAAAGTATTCCA-
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6759889 51 -  36342412 CTTGCTGTTTTTt-----tcattcaataaata----tctgactctgtaaaaagcactcta-
i otoGar3.GL873530          I 2 C 0
s mm10.chr9                  55173176 29 + 124595110 CTTGGTGTCTGTT--------TTTAGCA------------------TGGAAAGTG------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 45497 50 -  40214260 -----------TTATTGTTCATCGAACACCTATCTATCTGACTCTGTGCAAAGTACTCTAT
i canFam3.chr30             C 0 I 153
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=817721.000000
s hg38.chr15_KI270850v1_alt    187157 158 +    430880 ccatatcagtgt--------------------------------------------ggagaatccagaggcaaa----catacacagatacgcttcctgtcttgacggagctagatatagaattctgaggtcataattgagtttctttccaggtctttatacttttatgttctgatatttattgttgtagatgaaaagtctgatgc
s panTro5.chr15              17996782 154 -  83230942 ccatatcggtgt--------------------------------------------ggagaatccagaggcaaa----catacacagatatgcttcctgtcttgagggagctagatatagaattctgagatcataattgagtttctttccaggtctttatacttttatgttctga----tattgttgtagatgaaaagtctgatgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223096 154 -  99763055 ccatatcggtgt--------------------------------------------ggagaatccagaggcaaa----catacacagatatgcttcctgtcttgagggagctagatatagaattctgagatcataattgagtttctttccaggtctttatacttttatgttctga----tattgttgtagatgaaaagtctgatgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       285764 158 +    378907 ccatatcactgt--------------------------------------------ggagaatccagaggcaaa----catacacagatatgcttcctgtcttgacggagctagatatagaattctgaggtcataattgagtttctttccaggtctttatacttttatgttcttatatttattgttgtagatgaaaagtctgatgc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141316 158 + 121039945 ccatatcagtgt--------------------------------------------ggagaatccagaggcaaa----catacacagatatgcttcctgtcttgagggagctagatatagaattctgaggtcataattgagtttctttccaggtctttatacttttatgttctgatatttattgttgtagatgaaaagtctgatgc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60351455 158 + 169600520 CCATATCAGTGT--------------------------------------------GGAGAATCCGGAGGCAAA----CATACACAGATAGGCTTCCTGTATGAATGGAGCTAGATATAGAATTCTGAGGTCATAATTGAGTTTATTTCCAGGTCTTTACCCTTTTATGTTCTGCTGTTTATTATTACAGATGAAAAATCTGATAT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5348313 158 -   6271500 ccatatcagtgt--------------------------------------------ggagaatcccgaggcaaa----catacacagatatgattcctgtcttgatggagctAGATATAGAATTCTGAGGTCATAATTGAGTTTCTATCCAGGTCTTTACACTTTTATGTTCTGATATTTATTGTTATAGATGGAAAGTCTCATGC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1807168 158 -   1987038 CCATATCAGTGT--------------------------------------------GGAGAATCCAGAGGCAAA----CATACACAGATAGGCTTCCTGTATGAATGGAgctagatatagaattctgaggtcataattgagtttatttccaggtctttacccttttatgttctgctgtttattattacagatgaaaaatctgatat
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 221810 153 -   2853901 CCACATTGGTGT--------------------------------------------GGAGAATCTGGAGGTGAA----CATACATAGATATTCTTCCTGTTTTGATGGAGCT--atatagaattctaagttcataattgagtctctttccagttctttacacttttatcttctgatat---ttgttacaaatgaaaagtctgatgc
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             503281 153 -   3282555 CCACATTGGTGT--------------------------------------------GGAGAATCTGGAGGTGAA----CATAAACAGATATTCTTCCTGTCTTGATGGAGCT--Atatagaattctaagttcataattgagtctctttccagttctttacacttttatcttctgatat---ttgttgcaaatgaaaagtctgatgc
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       289091 153 -   1024465 CCACATTGGTAT--------------------------------------------GGAGAATCTGGAGGTGAA----CATACACAGATGTTCTTCCTGTCTTGATGGAGCT--Atatggaattctaagttcataattgagtctctttccagttctttacacttttatcttctgatat---ttgttacaaatgaaaagtctgatgc
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       734726 153 -   3745603 CCACATTGGTGT--------------------------------------------GGAGAATCTGGAGGTGAA----CATACACAGATATTCTTCCTGTCTTGATGGAGCT--ATATAGAATCCTAAGTTCATAATTGAGTCTTTTTCCAGTTCTTTACActtttatcttctgatat---ttgttacaaatgaaaagtctgatgc
i aotNan1.NW_018511953v1    C 0 I 686
s otoGar3.GL873530            6759940 107 -  36342412 ----gttggtgt--------------------------------------------ggaggatcaagtaatagg----caaacccagacatggttcctgtcctgatggagATAGATAAAGGATTCTG-------AATAAAGATTCTTTAGGAGGCTCTAAATCATT----------------------------------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55173205 130 + 124595110 ---TGTTGGTGC--------------------------------------------GGAGAACCCACATATACAAGTGTGTACACGTACAGAGCTTCTGACTGAATGGTGCCAGTTCCAGAGTTCTAAGTTCCTTAGTGGGTGTT-----------------------------ACATTTAGTGTTAATAGATACAACTCCAGTGG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 45700 183 -  40214260 ccctctcggtgtctctctgaataaataaataaaatcttaaaaaaaaaAAAAAATGCTGAGGATCCAGTGGCAGA----GAAACACAGATGTGCTGTCTGTCCCGATGGAACCAGATACAG--------------AATTGAGTCTCTTCTAGGTTCTTTACA-TTTTATCTTCCAGTACTTCTTGTCACAAGTGAAAAGCCTG----
i canFam3.chr30             I 153 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100   0 -    764599 I
e manLeu1.NW_012105520v1       297089   1 -   1458659 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=126159.000000
s hg38.chr15_KI270850v1_alt    187315 24 +    430880 ctatctgattcttagttctttCTG
s panTro5.chr15              17996936 24 -  83230942 ctatctgattcttagttctttctg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223250 24 -  99763055 ctatctgattcttagttctttCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       285922 24 +    378907 ctatctgattcttagttctttCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141474 24 + 121039945 ctatctgattcttagttctttCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60351613 24 + 169600520 CTGTCTGATTCTTAGTTCTTTCTG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5348471 24 -   6271500 CTATCTGTTTTGTAGTTCTTTCTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1807326 24 -   1987038 ctgtctgattcttagttctttctg
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 221963 24 -   2853901 ctagctgcttcttacttctttctg
i calJac3.chrY              C 0 I 18
s saiBol1.JH378276             503434 24 -   3282555 ctagctgcttcttacttctttctg
i saiBol1.JH378276          C 0 I 17
s cebCap1.NW_016107979v1       289244 24 -   1024465 ctagctgcttcttacttctttctg
i cebCap1.NW_016107979v1    C 0 I 680
s otoGar3.GL873530            6760047 19 -  36342412 CTAACTAATTC-----TCTTTCCA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55173335 24 + 124595110 CTGTGTGATTCCTCTTTCTGTGTA
i mm10.chr9                 C 0 I 5
s canFam3.chr30                 45883 22 -  40214260 CTGTCTGGTTCTT--CTTTTTCTA
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e aotNan1.NW_018511953v1       734879 686 -   3745603 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=1380.000000
s hg38.chr15_KI270850v1_alt    187339 2 +    430880 AT
s panTro5.chr15              17996960 2 -  83230942 at
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223274 2 -  99763055 AT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       285946 2 +    378907 AT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141498 1 + 121039945 A-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60351637 2 + 169600520 GT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5348495 2 -   6271500 AT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1807350 2 -   1987038 gt
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 222005 2 -   2853901 gt
i calJac3.chrY              I 18 C 0
s saiBol1.JH378276             503475 2 -   3282555 gt
i saiBol1.JH378276          I 17 C 0
s otoGar3.GL873530            6760066 2 -  36342412 GT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55173364 1 + 124595110 -T
i mm10.chr9                 I 5 I 1
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e aotNan1.NW_018511953v1       734879 686 -   3745603 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e canFam3.chr30                 45905 0 -  40214260 C
e cebCap1.NW_016107979v1       289268 680 -   1024465 I
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=148802.000000
s hg38.chr15_KI270850v1_alt    187341 47 +    430880 AGTTAGTATGA-TTTTCTGTGTAACTGTAAAGTGT-GGGGGttttac-tt
s panTro5.chr15              17996962 48 -  83230942 agttagtatga-ttttCTGTGTAACTGTAAAGTGT-GGGGGttttacttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223276 45 -  99763055 AGTTAGTATGA-TTTTCTGTGTAACTGTAAAGTGT-GGGGGTTTA---Ct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       285948 45 +    378907 AGTTAGTATGA-TTTTCTGTGTAACTGTAAAGTGT-GGGGGttttac---
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141499 42 + 121039945 ---TAGTATGA-TTTTCTGTGTAACTGTAAAGTGT-GGGGGttttac---
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60351639 47 + 169600520 AGTTAGGATAA-TTTTCTCTGTAACTGTAAAGTGT-GGAAGTTTCAC-TT
i rheMac8.chr7              C 0 I 593
s macNem1.NW_012011056v1      5348497 47 -   6271500 AGTTAGTATGA-TTTTCTGTGTAACTGTAAAGTGT-GGGGTTTTAAt-tt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1807352 47 -   1987038 agttaggatga-ttttctctgtaagtgtaaagtgt-ggaagtttcac-tt
i cerAty1.NW_012002657v1    C 0 I 596
s calJac3.chrY                 222007 47 -   2853901 agttggtatga-ttttctctGTAACTGTAAAGTGT-GGGGCTTTTAC-TT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             503477 48 -   3282555 agttggtatga-ttttctctgtaaccgcaaagtgtgggggtttttac-tt
i saiBol1.JH378276          C 0 C 0
s mm10.chr9                  55173366 44 + 124595110 TTCCTGTCTGATTTTTCTCTGTAACTGTGGTCTCT-G----TTTTGT-TT
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 45905 37 -  40214260 ------TATTT-TTTTCTTT----CTGGAAATTGG-TAGGGTTTTAC-TT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e aotNan1.NW_018511953v1       734879 686 -   3745603 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cebCap1.NW_016107979v1       289268 680 -   1024465 I
e otoGar3.GL873530            6760068  0 -  36342412 C
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=22640.000000
s hg38.chr15_KI270850v1_alt    187388 17 +    430880 ctttttttttttttgag-
s panTro5.chr15              17997010 17 -  83230942 ttttttttttttttgaa-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223321 17 -  99763055 ttttttttttttgtgaa-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       285993 16 +    378907 -tttttttttttttgag-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141541 12 + 121039945 -----tttttttttgag-
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      5348544 17 -   6271500 ttttttttttttttgag-
i macNem1.NW_012011056v1    C 0 C 0
s calJac3.chrY                 222054 17 -   2853901 TTCAATATTCCTTTAAA-
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             503525 17 -   3282555 ttcaatactccttaaaa-
i saiBol1.JH378276          C 0 C 0
s mm10.chr9                  55173410 17 + 124595110 CTCAGTATTTCTTTGGG-
i mm10.chr9                 C 0 I 150
s canFam3.chr30                 45942 18 -  40214260 TTCAGTATTCCTTTTGGG
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e aotNan1.NW_018511953v1       734879 686 -   3745603 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cebCap1.NW_016107979v1       289268 680 -   1024465 I
e otoGar3.GL873530            6760068  0 -  36342412 C
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e cerAty1.NW_012002657v1      1807399 596 -   1987038 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac8.chr7               60351686 593 + 169600520 I

a score=-7779.000000
s hg38.chr15_KI270850v1_alt    187405 3 +    430880 --aca
s panTro5.chr15              17997027 2 -  83230942 --ac-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223338 2 -  99763055 --ac-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286009 3 +    378907 --aca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141553 2 + 121039945 --ac-
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      5348561 1 -   6271500 --a--
i macNem1.NW_012011056v1    C 0 C 0
s calJac3.chrY                 222071 2 -   2853901 --AG-
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             503542 2 -   3282555 --aa-
i saiBol1.JH378276          C 0 C 0
s canFam3.chr30                 45960 3 -  40214260 GCA--
i canFam3.chr30             C 0 I 161
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e aotNan1.NW_018511953v1       734879 686 -   3745603 I
e mm10.chr9                  55173427 150 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cebCap1.NW_016107979v1       289268 680 -   1024465 I
e otoGar3.GL873530            6760068 0 -  36342412 C
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e cerAty1.NW_012002657v1      1807399 596 -   1987038 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac8.chr7               60351686 593 + 169600520 I

a score=-6742.000000
s hg38.chr15_KI270850v1_alt    187408  4 +    430880 agaa-------------------
s panTro5.chr15              17997029  4 -  83230942 agag-------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223340  4 -  99763055 agag-------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286012  4 +    378907 agaa-------------------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141555  4 + 121039945 ggag-------------------
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      5348562  4 -   6271500 ggaa-------------------
i macNem1.NW_012011056v1    C 0 I 1
s calJac3.chrY                 222073 13 -   2853901 AAAAAAAAGa----------ggg
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             503544 23 -   3282555 aaaaaaaaaaaaaaaaaaagagg
i saiBol1.JH378276          C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e aotNan1.NW_018511953v1       734879 686 -   3745603 I
e mm10.chr9                  55173427 150 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e canFam3.chr30                 45963 161 -  40214260 I
e cebCap1.NW_016107979v1       289268 680 -   1024465 I
e otoGar3.GL873530            6760068  0 -  36342412 C
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e cerAty1.NW_012002657v1      1807399 596 -   1987038 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac8.chr7               60351686 593 + 169600520 I

a score=243497.000000
s hg38.chr15_KI270850v1_alt    187412 84 +    430880 tctcgctctgtcagccaggctggagtgcagtggtgcgatcttg-----gatcactgcaacctccacctctcaggttcaaatgatactcc
s panTro5.chr15              17997033 84 -  83230942 tctcactgtgtcacccaggctggagtgcagtggtgctatcttg-----gatcattgcaacctccacctctcaggttcaaatgatactcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223344 84 -  99763055 tctcactgtgtcacccaggctggagtgcagtggtgctatcttg-----gatcattgcaacctccacctctcaggttcaaatgatactcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286016 84 +    378907 tctcgctctgtcagccaggctggagtgcagtggtgcgatcttg-----gatcactgcaacctccacctctcaggttcaaatgatactcc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141559 84 + 121039945 tctcgctctgtcacccaggctggagtgcagcggcgcgatcttg-----gatcactgcaacctccacctctcaggttcaaatgatactcc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60352279 84 + 169600520 tctcgctctgtcacccaggctggggagtagtggcgcgatctcg-----agtcactgtaacctccgcctccggggttcaagtgattctcc
i rheMac8.chr7              I 593 C 0
s macNem1.NW_012011056v1      5348567 84 -   6271500 tcttgctctgtcacccaggttggagtgcagtggcacgatcttt-----gttcactgcaacctccacctctcaggttcaaatgatcctcc
i macNem1.NW_012011056v1    I 1 C 0
s cerAty1.NW_012002657v1      1807995 84 -   1987038 tctcgctctgtcacccaggctggggagtagtggcgcgatctcg-----actcactgtaacctccgcctcccgggttcaagtgattctcc
i cerAty1.NW_012002657v1    I 596 C 0
s calJac3.chrY                 222086 89 -   2853901 tcttgctctcttgcccaggctagagtgcagtagtgtgatcatgcctctacctgctacagcctctacctcctggacataagcagtccttc
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             503567 84 -   3282555 tcttgctctcttgcccaggctagagtgcagtagtgtgattacg-----gcctgctacagcctctacctcctaggcataagcagtccttc
i saiBol1.JH378276          C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e aotNan1.NW_018511953v1       734879 686 -   3745603 I
e mm10.chr9                  55173427 150 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e canFam3.chr30                 45963 161 -  40214260 I
e cebCap1.NW_016107979v1       289268 680 -   1024465 I
e otoGar3.GL873530            6760068  0 -  36342412 C
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=457008.000000
s hg38.chr15_KI270850v1_alt    187496 141 +    430880 cgcctcagcctcctgagtagctgggactacaggcatg---taccac-catgcccaactaa---atttt--gtattattagtagagatagggtttcaccatg--ttagccaggatggtctcgatctgctgacctc--gtgatccacccgccttga
s panTro5.chr15              17997117 141 -  83230942 cacctcagcctcctgagtagctgggactacaggcatg---taccac-catgcccggctaa---atttt--gtattattagtagagatagggtttcaccatg--ttagccaggatggtctcgatctgctgacctt--gtgatctgcctgccttga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223428 141 -  99763055 cacctcagcctcctgagtagctgggactacaggcatg---taccac-catgcccggctaa---atttt--gtattattagtagagatagggtttcaccatg--ttagccaggatggtctcgatctgctgacctt--gtgatctgcctgccttga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286100 141 +    378907 cgcctcagcctcctgagtagctgggactacaggcatg---tgccac-catgcctggctaa---atttt--gtattattagtagagatagggtttcaccatg--ttagccaggatggtctcgatctgctgacctt--gtgatccacccgccttga
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141643 141 + 121039945 cgcctcagcctgctgagtagctgggactacaggcatg---taccac-catgcccggttaa---atttt--gtattattagtagagatagggtttcaccatg--ttagccaggatggtctcgatctgccgacctc--gtgatccgcctgcctagc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60352363 146 + 169600520 tgcctcagcctcctgagtaggtgggactacaggcgtg---tgccat-catgcctggctaatttttttt--gtatttttagtagagacagggtttcaccatgttttagccaggatggtctctgtctcctgacctc--gtgatctgcttgcctcag
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5348651 142 -   6271500 ttcctcagcctcctgagtagcttggactacaagcatg---tgccac-catgcctgactaa--attttt--gtattttcagtagagacagggtttcaccgtg--ttagccaggatggtctcgatctcctgacctc--gtgatctacctgcctcag
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1808079 145 -   1987038 tgcctcagcctcctgagtaggtgggactacaggcgtg---tgccat-catgcctggctaa-ttttttt--gtatttttagtagagacagggtttcaccacgttttagccaggatggtctctgtctcctgacctc--gtgatctgcttgcctcag
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 222175 148 -   2853901 cacctcagcctcctgagtagctgggactacaggtgtgcaatgccac-catgcgtgactga---tttttaaacactttttgtagagatgggtatataccatg--ttgcccaagctggcctcaaactcctgggctcaagtgctcctcctgccttgg
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             503651 148 -   3282555 tacctcagcctcctgagtagctgggactacaggtgtgcaatgccac-catgtgtgactaa---tttttaaaaactttttgtagatatgggtttttaccatg--ttgcccaagctggcctcaaactcctgggctcaagcgctactcctgccttgg
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6760068 137 -  36342412 CTcttctgactcccaagtagctg---ctacagatgcc---tgccatgcatgc--agctcg---ttttt--ctatttttagtagagatggggtctcac--tc--ttgctcaggcaggtcttgaactcctgaggtcaagcgatcctcctgcctcag
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e aotNan1.NW_018511953v1       734879 686 -   3745603 I
e mm10.chr9                  55173427 150 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e canFam3.chr30                 45963 161 -  40214260 I
e cebCap1.NW_016107979v1       289268 680 -   1024465 I
e colAng1.NW_012118866v1       727100   0 -    764599 I
e manLeu1.NW_012105520v1       297089   1 -   1458659 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=99982.000000
s hg38.chr15_KI270850v1_alt    187637 35 +    430880 tctctcaaagtgct---ggaattacagatgtgagccac
s panTro5.chr15              17997258 35 -  83230942 tctgtcaaagtgct---gggattacagatgtgagccac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223569 35 -  99763055 tctgtcaaagtgct---gggattacagatgtgagccac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286241 35 +    378907 tctctcaaagtgct---gggattacagatgtgagccac
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141784 35 + 121039945 tctctcaaagtgct---gggattacagatgtgagccac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60352509 35 + 169600520 cctctcaaagtacc---gagattacagacataagccac
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5348793 35 -   6271500 cctctcaaagtgcc---aggattacagacatgagccac
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1808224 35 -   1987038 cctctcaaagtacc---gggattatagacataagccac
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 222323 34 -   2853901 cctccc-aggtgtt---ggtattacaggcatgagccac
i calJac3.chrY              C 0 I 259
s saiBol1.JH378276             503799 35 -   3282555 cctcccaaggtgtt---gttattacaggcatgagccac
i saiBol1.JH378276          C 0 I 263
s otoGar3.GL873530            6760205 14 -  36342412 cctcccggagtTTT------------------------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 46124 38 -  40214260 TTTCTCCACATTCTAAGGGAATGTCACAGTTTGGTCAT
i canFam3.chr30             I 161 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e aotNan1.NW_018511953v1       734879 686 -   3745603 I
e mm10.chr9                  55173427 150 + 124595110 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cebCap1.NW_016107979v1       289268 680 -   1024465 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=9532.000000
s hg38.chr15_KI270850v1_alt    187672  9 +    430880 cTT----------AATGTT
s panTro5.chr15              17997293  9 -  83230942 cTT----------AATGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223604  9 -  99763055 cTT----------AATGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286276  9 +    378907 cTT----------AATGTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141819  9 + 121039945 cTT----------AATGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60352544 10 + 169600520 tgT---------AAATGCT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5348828 10 -   6271500 ccc---------gAATGCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1808259 10 -   1987038 tgT---------AAATGCT
i cerAty1.NW_012002657v1    C 0 C 0
s canFam3.chr30                 46162 19 -  40214260 CTTCTAAATTGCAAATGCT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e aotNan1.NW_018511953v1       734879 686 -   3745603 I
e mm10.chr9                  55173427 150 + 124595110 I
e calJac3.chrY                 222357 259 -   2853901 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cebCap1.NW_016107979v1       289268 680 -   1024465 I
e otoGar3.GL873530            6760219  0 -  36342412 C
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e saiBol1.JH378276             503834 263 -   3282555 I

a score=38624.000000
s hg38.chr15_KI270850v1_alt    187681 14 +    430880 TTGCTGAGTCACGT
s panTro5.chr15              17997302 14 -  83230942 TTGCTGAGTCATGT
i panTro5.chr15             C 0 I 1
s panPan2.chr15              17223613 14 -  99763055 TTGCTGAGTCATGT
i panPan2.chr15             C 0 I 1
s gorGor5.CYUI01015946v1       286285 14 +    378907 TTGCTGAGTCATGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141828 14 + 121039945 TTGCTGAGTCACGT
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr7               60352554 14 + 169600520 TTGCTGAGTCAAGT
i rheMac8.chr7              C 0 I 2
s macNem1.NW_012011056v1      5348838 14 -   6271500 TTGCTGGGTCAAGT
i macNem1.NW_012011056v1    C 0 I 79
s cerAty1.NW_012002657v1      1808269 14 -   1987038 TTGCTGAGTCAAGT
i cerAty1.NW_012002657v1    C 0 I 2
s mm10.chr9                  55173577 14 + 124595110 CTGCTGGGtttttt
i mm10.chr9                 I 150 C 0
s canFam3.chr30                 46181 14 -  40214260 TTGGTCATTCAAAT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e aotNan1.NW_018511953v1       734879 686 -   3745603 I
e calJac3.chrY                 222357 259 -   2853901 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cebCap1.NW_016107979v1       289268 680 -   1024465 I
e otoGar3.GL873530            6760219  0 -  36342412 C
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e saiBol1.JH378276             503834 263 -   3282555 I

a score=2552.000000
s hg38.chr15_KI270850v1_alt    187695 1 +    430880 C
s panTro5.chr15              17997317 1 -  83230942 C
i panTro5.chr15             I 1 C 0
s panPan2.chr15              17223628 1 -  99763055 C
i panPan2.chr15             I 1 C 0
s gorGor5.CYUI01015946v1       286299 1 +    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141843 1 + 121039945 C
i nomLeu3.chr6              I 1 C 0
s calJac3.chrY                 222616 1 -   2853901 C
i calJac3.chrY              I 259 C 0
s saiBol1.JH378276             504097 1 -   3282555 c
i saiBol1.JH378276          I 263 C 0
s mm10.chr9                  55173591 1 + 124595110 t
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46195 1 -  40214260 C
i canFam3.chr30             C 0 I 1
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e aotNan1.NW_018511953v1       734879 686 -   3745603 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cebCap1.NW_016107979v1       289268 680 -   1024465 I
e otoGar3.GL873530            6760219 0 -  36342412 C
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e cerAty1.NW_012002657v1      1808283 2 -   1987038 I
e macNem1.NW_012011056v1      5348852 79 -   6271500 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac8.chr7               60352568 2 + 169600520 I

a score=40153.000000
s hg38.chr15_KI270850v1_alt    187696 39 +    430880 ATTGTG--TCCTGGCCCTTCTGCAACTGGtgtgtt----gttttg---------
s panTro5.chr15              17997318 34 -  83230942 ATTGTG--TCCTGGCCCTTCTGCAACTGG-----T----GTTTTG---------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223629 39 -  99763055 ATTGTG--TCCTGGCCCTTCTGCAACTGGTGtttt----gttttg---------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286300 39 +    378907 ATTGTG--TCCTGGCCCTTGTGCAACTGGtgtttt----gttttg---------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141844 39 + 121039945 ATTGTG--TCCTGGCCCTTCTACAACTGGTgtttt----ggtttt---------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60352570 28 + 169600520 ATTGTG--CTCTGGCCCTTCTACAATT--------------TTT----------
i rheMac8.chr7              I 2 I 1
s cerAty1.NW_012002657v1      1808285 28 -   1987038 ATTGTG--CTCTGGCCCTTCTACAAtt--------------ttt----------
i cerAty1.NW_012002657v1    I 2 C 0
s calJac3.chrY                 222617 26 -   2853901 ATTGTA--CTCTGGCCCTTCTACAAGTG--------------------------
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             504098 27 -   3282555 attgta--ctctggcccttctacaagtgg-------------------------
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6760219 22 -  36342412 --------TCCCAGTCCTT-TACACTT--------------TTTT---------
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55173592 39 + 124595110 tttctt--ttactgtttttcttcaaatgtttcttt----cttttt---------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46197 54 -  40214260 ATTGAGCTCTCTGGCCCTTCTACTAGTGTTTttttttcccttttttctttatct
i canFam3.chr30             I 1 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e aotNan1.NW_018511953v1       734879 686 -   3745603 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cebCap1.NW_016107979v1       289268 680 -   1024465 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macNem1.NW_012011056v1      5348852 79 -   6271500 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=34829.000000
s hg38.chr15_KI270850v1_alt    187735 13 +    430880 ttttgt----ttttttt
s panTro5.chr15              17997352 13 -  83230942 TTTTGT----TTttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223668 13 -  99763055 tttttt----ttttttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286339 17 +    378907 ttttgttttgttttTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141883 16 + 121039945 ttttttttt-ttttttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60352599 13 + 169600520 TTTTCT----TTTTTTT
i rheMac8.chr7              I 1 I 24
s macNem1.NW_012011056v1      5348931 13 -   6271500 gtttgt----ttgtttT
i macNem1.NW_012011056v1    I 79 C 0
s cerAty1.NW_012002657v1      1808313 13 -   1987038 ttttct----ttttttt
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 222643  6 -   2853901 -----------TTTTTT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             504125  7 -   3282555 ----------ttttttg
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6760242 13 -  36342412 TTCTGG----TATTTAT
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  55173631 11 + 124595110 --tttt----ttttttt
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46251 13 -  40214260 tttttt----ttttttt
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e aotNan1.NW_018511953v1       734879 686 -   3745603 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cebCap1.NW_016107979v1       289268 680 -   1024465 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=15189.000000
s hg38.chr15_KI270850v1_alt    187748 10 +    430880 ggtttAGAGG
s panTro5.chr15              17997365 10 -  83230942 ggtttagggg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223681 10 -  99763055 GGTTTAGGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286356 10 +    378907 GGTTTAGGGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141899 10 + 121039945 ggtttaggGG
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      5348944 10 -   6271500 GGTTTAGGGG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1808326 10 -   1987038 tGGGGGGGGG
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 222649 10 -   2853901 GGGGTGGAGG
i calJac3.chrY              C 0 I 3
s saiBol1.JH378276             504132 10 -   3282555 ggggtggagg
i saiBol1.JH378276          C 0 I 3
s otoGar3.GL873530            6760255 10 -  36342412 TGTTAACAAA
i otoGar3.GL873530          C 0 I 7
s mm10.chr9                  55173642 10 + 124595110 CCTTCAAATG
i mm10.chr9                 C 0 I 2
s canFam3.chr30                 46264 10 -  40214260 tttttaagaa
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e aotNan1.NW_018511953v1       734879 686 -   3745603 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e cebCap1.NW_016107979v1       289268 680 -   1024465 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac8.chr7               60352612 24 + 169600520 I

a score=39182.000000
s hg38.chr15_KI270850v1_alt    187758 10 +    430880 --TCTTATTTTT
s panTro5.chr15              17997375 10 -  83230942 --tcttattttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223691 10 -  99763055 --TCTTATTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286366 10 +    378907 --TCTTATTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141909 10 + 121039945 --TCTTATTTTT
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      5348954 10 -   6271500 --TCTTATTTTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1808336 10 -   1987038 --TCTTATTTTT
i cerAty1.NW_012002657v1    C 0 I 1
s calJac3.chrY                 222662 10 -   2853901 --TCTTATCCTT
i calJac3.chrY              I 3 C 0
s saiBol1.JH378276             504145 10 -   3282555 --tcttattttt
i saiBol1.JH378276          I 3 C 0
s cebCap1.NW_016107979v1       289948 10 -   1024465 --tcttattttt
i cebCap1.NW_016107979v1    I 680 C 0
s aotNan1.NW_018511953v1       735565 10 -   3745603 --TCTTATTTTT
i aotNan1.NW_018511953v1    I 686 C 0
s otoGar3.GL873530            6760272  3 -  36342412 --TCT-------
i otoGar3.GL873530          I 7 I 1
s mm10.chr9                  55173654  4 + 124595110 --TCTT------
i mm10.chr9                 I 2 C 0
s canFam3.chr30                 46274 10 -  40214260 aatctttttg--
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac8.chr7               60352612 24 + 169600520 I

a score=201568.000000
s hg38.chr15_KI270850v1_alt    187768 45 +    430880 ACCTCCTAGAATTGT-----CTTTTGCATAGTAATCTGTTTT--GTATTT----------------TG
s panTro5.chr15              17997385 45 -  83230942 acctcctagaattgt-----cttttgcatagtaatctgtttt--gtattt----------------tg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223701 45 -  99763055 ACCTCCTAGAATTGT-----CTTTTGCATAGTAATCTGTTTT--GTATTT----------------TG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286376 45 +    378907 ACCTCCTAGAATTGt-----cttttgcatagtaatctgtttt--gtattt----------------tg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141919 45 + 121039945 ACCTCCTAGAATTGT-----CTTTTGCATAGTAATCTGTTTT--GTATTT----------------TG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60352636 45 + 169600520 ACCTCCTAGAATTGT-----CTTTTGCATGGTAATCTGTTTT--GTATTT----------------TG
i rheMac8.chr7              I 24 C 0
s macNem1.NW_012011056v1      5348964 45 -   6271500 ACCTCCTAGAATTGT-----CTTTTGCATTGTAATCTGTTTT--ATATTT----------------TG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1808347 45 -   1987038 ACCTCCTAGAATTGT-----CTTTTGCATGGTAATCTGTTTT--GTATTT----------------TG
i cerAty1.NW_012002657v1    I 1 C 0
s calJac3.chrY                 222672 57 -   2853901 AC-TTCTAGAATTGT------GCTTGCATAGTAACCttttt----ttttttttttttttttGTGTGTG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             504155 42 -   3282555 actttctagaattgt------gcttgcatagtaaccttttt----tattt----------------tg
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       289958 42 -   1024465 actttctagaattgt------gcttgcatagtaaccttttt----tattt----------------tg
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       735575 42 -   3745603 ACTTTCTAGAATTGT------GCTTGCATAGTAACCTTTTT----TATTT----------------TG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6760276 41 -  36342412 AGCCCTGATTCTTCT------TTCTGTATATTA---TTTTTC--CTTTTT----------------TG
i otoGar3.GL873530          I 1 I 231
s mm10.chr9                  55173658 49 + 124595110 ATTTCCTAGAGCTGTCTTGCCCTTTTTATAGTAACTTGTTCT---TGTTT----------------TG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46284 51 -  40214260 atttcccagaaccatcttttcctttgcata-taatcttttttttatattt----------------tg
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=1103337.000000
s hg38.chr15_KI270850v1_alt    187813 203 +    430880 TGGATACA---GTATCTTCTCAATTACTGCTAAAGATTCCAATTAGGTTTTAAAATTCTG---------CTTATTTCCTTCATTAGCAGTGCTTCAGGTCATTCGT---GCTTCTTTG----ACTTGGCACCTTCCTTT-CAGGTTGCTAATTTTCTTCAACTCTCTGATA-ATACATGGTTATCTGTTCATTTATAGATGAGGTATACCTTTGATCAGTATGA
s panTro5.chr15              17997430 203 -  83230942 tggataca---gtatcttctcaattactgctaaagattccaattaggttttaaaattctg---------cttatttccttcattagcagtgcttcaggtcattcgt---gcttctttg----acttggcaccttccttt-caggttgctaattttcttcaactctctgatg-atacatggttatctgttcatttataggtgaggtaTACCTTTGATCAGTATGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223746 203 -  99763055 TGGATACA---GTATCTTCTCAATTACTGCTAAAGATTCCAATTAGGTTTTAAAATTCTG---------CTTATTTCCTTCATTAGCAGTGCTTCAGGTCATTCGT---GCTTCTTTG----ACTTGGTACCTTCCTTT-CAGGTTGCTAATTTTCTTCAACTCTCTGATG-ATACATGGTTATCTGTTCATTTATAGGTGAGGTATACCTTTGATCAGTATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286421 203 +    378907 tggataca---gtatcttctcaattactgctaaagattccaattagGTTTTAAAATTCTG---------CTTATTTCCTTCATTAGCAGTGCTTCAGGTCATTCGT---GCTTCTTTG----ACTTGGCACCTTCCTTT-CAGGTTGCTAATTTTCTTCAACTCTCTGATA-ATACATGGTTATCTGTTCATTTATAGATGAGGTATACCTTTGATCAGTATGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102141964 203 + 121039945 TGGATACA---CTATCTTCTCAATTACTGCTAAAGATTCCAATTAGGTTTTAAAATTCTG---------CTTATTTCCTTCATTAGCAGTGCTTCAGGTCATTTGT---GCTCCTTTG----ACTTGGCACCTTCCTTT-CAGGTTGCTAATTTTCTTCAACTCTCTGATG-ATGCATGGTTATCTGTTCATTTATAGATGAGGTATACCTTTGATCAGTATGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60352681 203 + 169600520 TGGATACA---GTATCTTTTCAATTACTGCTAAGGATTCCAATTAGGTTTTAAAATTCTG---------TTTATTTCCTTCATTAGCAGTGCTTCAGGTCATTTGT---GCTTCTTTG----ACTTGGCACCTTCCTTT-CAGGTTGCTAATTTTCTTCAACTCTCTGATG-ATACATGGTTATCTGTTCATTTATAGATGAGGTATACCTTTGATCAGTATCA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349009 200 -   6271500 TGGATACA---GTATCTTCTCAATTACTGCTAAAGGTTCCAATTAGGttttacaattctg---------ttta-ttccttcattagcagtgcttcaggtcatttgt---gcttctttg----acttggcaccttccttt-caggttgctaattttcttcaactctctgatgtatacatggttatctgtta--taatacatggaggTAACCTTTGA-CAGTATCA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1808392 203 -   1987038 TGGATACA---GTATCTTCTCAATTACTGCTAAAGATTCCAATTAGGTTTTACAATTCTG---------TTTATTTCCTTCATTAGCAGTGCTTCAGGTCATTTGT---GCTTCTTTG----ACTTGGCACCTTCCTTT-CAGGTTGCTAATTTTCTTCAACTCTCTGATG-ATACATGGTTATCTGTTCATTTATAGATGAGGTATACCTTTGATCAGTATCA
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 222729 176 -   2853901 TGGATGCA---ATATCTTCTCAATTACTGCCAAAAATTCCAATTAGGTTTTTAAATTCTA---------TTTATTTCCTTCAATAGTAGTGCTTCAGGTCATTTGT---GCTTACTTG----ACTTGGCACCTTCCTTT-CAGATTGCTTA-TCTCTTCA---------------------------ATTATTTATAGATGAGGTATACCATTGATCAGTATCA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             504197 176 -   3282555 tggatgca---gtatcttctcaattactgccaaaaattccagtcaggtttttaaattcta---------tttatttccttcattagtagtgcttcaggtcgtttgt---gcttacttg----acttggcaccttccttt-caGATTGCTTA-TCTCTTCA---------------------------TTTATTTATAGATGAGGTATACCATTGATCAGTATCA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       290000 176 -   1024465 tggatgca---gtgtcttctcaattactgccaaaaatttcaattaggtttttaaattcta---------tttatttccttcattagtagtgcttcaggtcatttgt---gcttatttg----acttcgcaccttccttt-caGATTGCTTA-TCTCTTCA---------------------------TTTATTTATAGATGAGGTATACCATTGATCAGTATCA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       735617 173 -   3745603 TGGATGCA----TGTCTTCTCAATTACTGCCAAAAATTCCAATTAGGTTTTTCAATTCTA---------TTTATTTCCTTCATTAGTAGTGCTTCAGGTCATTTGT---GCTTATTTG----ACTTGGCACCTTCCTTT-CAGATTGCT---TCTCTTCA---------------------------TTTGTTTATAGATGAGGTATACCATTGATCAGTATCA
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  55173707 182 + 124595110 CGGGTGCA---GTAGCTTCTCAACAGGCA-TAATGATTCCAGTTAGATTTT--AGCTCTG-------------TCTTCTTCACTAGTTGTGCTTCAGGCCATGTGTGTGGCTTTTCTG-----TGTGGTACC-----CT-CAGG--GTCTGTTTTCTTCA---------TG-GTACTTGGTCATTTGCTTGTTTCTAGGAGAGGTATGGTATCAGCCAGTACCA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46335 220 -  40214260 tgtatacagcagtgtcttctcaagtactgctaaggattccaattaggttttttttttttaaattattattttattttcttcattaataatgcttcaggtcacttgt---tcttttttgttcgacttggtgcctttttttccagattgcttgtgttcttcaaatatctggtg-atacttggttacctgctcctttatagatgaagtataccattgatcattgtca
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 917260 2588 - 119751181 I
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e otoGar3.GL873530            6760317 231 -  36342412 I
e colAng1.NW_012118866v1       727100   0 -    764599 I
e manLeu1.NW_012105520v1       297089   1 -   1458659 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=37632.000000
s hg38.chr15_KI270850v1_alt    188016 5 +    430880 GTTGT
s panTro5.chr15              17997633 5 -  83230942 GTTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223949 5 -  99763055 GTTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286624 5 +    378907 GTTGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142167 5 + 121039945 GTTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60352884 5 + 169600520 GTTAT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349209 5 -   6271500 GTTGT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1808595 5 -   1987038 GTTAT
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 222905 5 -   2853901 GTTGT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             504373 5 -   3282555 GTTGT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       290176 5 -   1024465 GTTGT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       735790 5 -   3745603 GTTGT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 919848 5 - 119751181 GTTGA
i micMur3.chr3              I 2588 C 0
s mm10.chr9                  55173889 5 + 124595110 GTTTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46555 5 -  40214260 gtggt
i canFam3.chr30             C 0 I 3
e proCoq1.NW_012149419v1       642772 687 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e otoGar3.GL873530            6760317 231 -  36342412 I
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=619313.000000
s hg38.chr15_KI270850v1_alt    188021 88 +    430880 TA---TGAGTGTCTTCAG-AATTGTTACTCTTTTCTGCTGTGGCCTCCCCCTCCTGGTTTGCAGACCTGTGCTCTTCCTGTGGCATGA-GGGT
s panTro5.chr15              17997638 88 -  83230942 TA---TGAGTGTCTTCAG-AATTGTCACTCTTTTCTGCTGTGGCCTCCCCCTCCTTGTTGGCAGACCTGTGCTCTTCCTGTGGCATGA-GGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17223954 88 -  99763055 TA---TGAGTGTCTTCAG-AATTGTCACTCTTTTCTGCTGTGGCCTCCCCCTCCTTGTTGGCAGACCTGTGCTCTTCCTGTGGCATGA-GGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286629 88 +    378907 TA---TGAGTGTCTTCAA-AATTGTTACTCTTTTCTGCTGTGGCCTCCCCCTCCTGGTTTGCAGACCTGTGCTCTTCCTGTGGCATGA-GGAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142172 88 + 121039945 TA---TGAGTGTCTTCAG-AATTGTCACTCTTTTCTGCTGTGGCCTCCCCCTCCTGGTTTGCAGACCTGTGCTCTTCCTGTGGCATGA-GGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60352889 88 + 169600520 TA---TGAGTGTCTTCAG-AATTGTCACTCTTTTCTGCTGTGGCCTCCCCCTCCTGGTTTGCAGACCTGTGCTCTTCCTGTGGCATGA-GGAT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349214 87 -   6271500 TA---TGAATG-CTTCAG-AATTGTCACTCTTTTCTGCTGGTGCCTCCCGCTCTGGTTTGGCAGACCTGTGGCCTT-CTGTGGCATGAGGGAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1808600 88 -   1987038 TA---TGAGTGTCTTCAG-AATTGTCACTCTTTTCTGCTGTGGCCTCCCCCTCCTGGTTTGCAGACCTGTGCTCTTCCTGTGGCATGA-GGAT
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 222910 91 -   2853901 TGATCCGAATGTCTTCAG-AATTATCACTCTTTTCTGCTGTGGCTGTCCCCTCCTGGTGTGCAGACCTCTGCTCTTCCTGTGGAATGA-GGAT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             504378 91 -   3282555 TGATCTCAGTGTCTTCAG-AATTATCACTGTTTTCTGCTGTGGCTGCCCTCTCCTGGTGTGCAGACCTGTGCTCTTCCTGTGGCATGA-GGAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       290181 91 -   1024465 TGATCTCAGTGTCTTCAG-AATTATCACTATTTTCTGCTGTGGCTGCCCTCTCCTGGTGTGCACACCTGTGCTCTTCCTGTGGCATGA-GGAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       735795 91 -   3745603 TGATCTAAGTGTCTTCAG-AATTATCACTCTTATCTGCTGTGACTGCCCTGTCCTAGTGTGCAGACCTGTGCTCTTCCTGTGGCATGT-GGAT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 919853 80 - 119751181 TA---TGGGTGTCCCCAG-AATTGTCACTCTTCTCTGCTGTGGCCT-CCCCTCCTGGTTTGCAGAGCTGTGCTCT-------TCATGA-GGAT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       643459 85 -   2566024 TA---TGTGTGTCTTCAG-AATTGTCACTCTTCTCTGCTGTGGCCT--CCCGCCTGGTTTGCAGAGCTGTGCTCTT-CTGTGTCGTGA-GGGT
i proCoq1.NW_012149419v1    I 687 I 34
s mm10.chr9                  55173894 71 + 124595110 ---GACAGATTTCTGTAG-GAT----GCTTGTCTCTGTTGT------------CCAGTATGTAGACCTGGGTTCTG-CTGAAGCTGGA-GGGT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46563 89 -  40214260 tg---tgagtcccgtcagcaattgtCGCTCTTCTCTGCTGTGGCCTCCCCCTCCGGGTTTGTACACCTGTGTTCTGACTGTGGCATGT-GAAT
i canFam3.chr30             I 3 C 0
e dasNov3.JH569975              26210 12202 -   2180720 I
e otoGar3.GL873530            6760317 231 -  36342412 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=53044.000000
s hg38.chr15_KI270850v1_alt    188109 8 +    430880 GGGGAGGT
s panTro5.chr15              17997726 8 -  83230942 GGGGAGGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224042 8 -  99763055 GGGGAGGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286717 8 +    378907 GGGGAGGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142260 8 + 121039945 GGGAAGGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60352977 8 + 169600520 GGGGAGGT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349301 8 -   6271500 GGGGAGGG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1808688 8 -   1987038 GGGGAGGT
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 223001 8 -   2853901 GAGGAGGT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             504469 8 -   3282555 GAGGAGGT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       290272 8 -   1024465 GAGGAGGT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       735886 8 -   3745603 GAGGTGGT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 919933 8 - 119751181 GGGGAAGT
i micMur3.chr3              C 0 C 0
s mm10.chr9                  55173965 3 + 124595110 --GGA---
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46652 8 -  40214260 GGGGAGGT
i canFam3.chr30             C 0 C 0
e proCoq1.NW_012149419v1       643544 34 -   2566024 I
e dasNov3.JH569975              26210 12202 -   2180720 I
e otoGar3.GL873530            6760317 231 -  36342412 I
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=162130.000000
s hg38.chr15_KI270850v1_alt    188117 30 +    430880 GCTGGCCAG-TGAGCTTTCCAGATTTTGAGC
s panTro5.chr15              17997734 30 -  83230942 GCTGGCTGG-TGAGCTTTCCAGATTTTGAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224050 30 -  99763055 GCTGGCTGG-TGAGCTTTCCAGATTTTGAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286725 30 +    378907 GCTGGCCAG-TGAGCGTTCCAGATTTTGAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142268 30 + 121039945 GCTGGCCAG-TGAGCTTTCCAGATTTTGAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60352985 30 + 169600520 GCTGGCCGG-TGAGCTTTCTAGCTCCTGAGC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349309 30 -   6271500 GCTGGCCGG-TGAGCTTTCCAGATTTTGAAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1808696 30 -   1987038 GCTGGCCGG-TGAGCTTTCTAGCTCCTGAGC
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 223009 30 -   2853901 CCTGGCCAA-TGAGCTTTCCAGTTTCTGAGC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             504477 30 -   3282555 CCTGGCCAG-TGAGCTTTCCAGCTTCTGAGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       290280 30 -   1024465 CCTGGCCAA-TGAGCTTTCCAGCTTCTGAGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       735894 30 -   3745603 CCTGGCCGA-TGAGCTTTCCAGCTTCTGAGC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 919941 27 - 119751181 GCTAATTGG-TGG--CTTCCAGCTCCCAGG-
i micMur3.chr3              C 0 C 0
s mm10.chr9                  55173968 20 + 124595110 ----GCTTG-TGCGGCTTCCAACTT------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46660 31 -  40214260 ACTGACAGGCCGACTTTTCCAACTCCTGAGT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              38412 26 -   2180720 GTTGGCTGG-CAAGCT----GGGTACTGAAT
i dasNov3.JH569975          I 12202 C 0
e proCoq1.NW_012149419v1       643544 34 -   2566024 I
e otoGar3.GL873530            6760317 231 -  36342412 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=118506.000000
s hg38.chr15_KI270850v1_alt    188147 17 +    430880 TAAAAGGAAGAGGCAGA
s panTro5.chr15              17997764 17 -  83230942 TAAAAGGAAGAGGCAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224080 17 -  99763055 TAAAAGGAAGAGGCAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286755 17 +    378907 TAAAAGGAAGAGGCAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142298 17 + 121039945 TAAAAGGAAGAGGCAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353015 17 + 169600520 TAGCAGGAAGAGGCAGA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349339 13 -   6271500 AA--AGGAAGAG--AGA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1808726 17 -   1987038 TAGCAGGAAGAGGCAGA
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 223039 17 -   2853901 TAAAAGGAAGAGGCAGA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             504507 17 -   3282555 TAAAAGGAAGAGGCAGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       290310 17 -   1024465 TAAAAGGAGGAGGCAGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       735924 17 -   3745603 TAAAAGGAAGAGGCAGA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 919968 17 - 119751181 TAAAAGGAAGAGACAGA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       643578 17 -   2566024 TAAAAGGAAGAGACAGA
i proCoq1.NW_012149419v1    I 34 C 0
s mm10.chr9                  55173988  4 + 124595110 -------------CAGA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46691 15 -  40214260 -TACAGGAAGAGATGC-
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              38438 15 -   2180720 --AAATGAAGAGAAGGA
i dasNov3.JH569975          C 0 C 0
e otoGar3.GL873530            6760317 231 -  36342412 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=339207.000000
s hg38.chr15_KI270850v1_alt    188164 36 +    430880 GTCTGTTATAAGATTTTGCTGCTGCATTGAGTTATA
s panTro5.chr15              17997781 36 -  83230942 GCCTGTTATAAGATTTTGATGCTGCATTGAGTTACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224097 36 -  99763055 GCCTGTTATAAGATTTTGATGCTGCATTGAGTTACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286772 31 +    378907 GTC-----TAAGATTTTGCTGCTGCATTGAGTTATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142315 36 + 121039945 ATCCGTTATAAGATTTTGCTGCTGCATTGAGTTATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353032 36 + 169600520 GTCTGTTATAAGATTTTGCTACTGCATTGAGTTATA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349352 36 -   6271500 ATCTGTTATAAGATTTTGCTGCTGATTGGAGTTATA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1808743 36 -   1987038 GTCTGTTATAAGATTTTGCTACTGCATTGAGTTATA
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 223056 36 -   2853901 GTCTGTTATAACATTTTGCTGCTTCATTGAGTTATA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             504524 36 -   3282555 GTCTGTTATAACATTTTGCTGCTGCATTGAGTTATA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       290327 36 -   1024465 GTCTGTTATAACATTTTGCTGCTGCATTGAGTTATA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       735941 36 -   3745603 GTCTGTTACAACATTTTGCTGCTGCATTGAGTTATA
i aotNan1.NW_018511953v1    C 0 I 216
s micMur3.chr3                 919985 36 - 119751181 GTCTGTTATGAGATTTTGCTGCTGCGTTGAGTTATG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       643595 36 -   2566024 GTCTGTTAGGAGATTTTGCTGCTGCGGTGAGTTATG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6760548 36 -  36342412 GTCTGTCACGAGGTTTTGCTACTGCATTGAGTTATT
i otoGar3.GL873530          I 231 C 0
s mm10.chr9                  55173992 36 + 124595110 GTGTGTTAGGAGATTTCATTCTTGGGTTGAGTTATA
i mm10.chr9                 C 0 I 1
s canFam3.chr30                 46706 32 -  40214260 ATTTGTT---AGATTTTGTTGCT-TGTTGAGTTATA
i canFam3.chr30             C 0 I 4
s dasNov3.JH569975              38453 36 -   2180720 ATCTGTTAGGAGATTTTATTACTTCACTGAGATACC
i dasNov3.JH569975          C 0 C 0
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=18989.000000
s hg38.chr15_KI270850v1_alt    188200 2 +    430880 TT
s panTro5.chr15              17997817 2 -  83230942 TT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224133 2 -  99763055 TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286803 2 +    378907 TT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142351 2 + 121039945 TT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353068 2 + 169600520 TT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349388 2 -   6271500 TT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1808779 2 -   1987038 TT
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 223092 2 -   2853901 TT
i calJac3.chrY              C 0 I 218
s saiBol1.JH378276             504560 2 -   3282555 TT
i saiBol1.JH378276          C 0 I 218
s cebCap1.NW_016107979v1       290363 2 -   1024465 TT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       736193 2 -   3745603 tt
i aotNan1.NW_018511953v1    I 216 C 0
s micMur3.chr3                 920021 2 - 119751181 TT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       643631 2 -   2566024 TT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6760584 2 -  36342412 TT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55174029 1 + 124595110 T-
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 46742 2 -  40214260 TT
i canFam3.chr30             I 4 C 0
s dasNov3.JH569975              38489 2 -   2180720 TT
i dasNov3.JH569975          C 0 C 0
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=6392.000000
s hg38.chr15_KI270850v1_alt    188202 1 +    430880 A
s panTro5.chr15              17997819 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224135 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286805 1 +    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142353 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s calJac3.chrY                 223312 1 -   2853901 a
i calJac3.chrY              I 218 C 0
s saiBol1.JH378276             504780 1 -   3282555 a
i saiBol1.JH378276          I 218 C 0
s cebCap1.NW_016107979v1       290365 1 -   1024465 A
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       736195 1 -   3745603 a
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 920023 1 - 119751181 A
i micMur3.chr3              C 0 I 74
s proCoq1.NW_012149419v1       643633 1 -   2566024 A
i proCoq1.NW_012149419v1    C 0 I 3
s otoGar3.GL873530            6760586 1 -  36342412 A
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55174030 1 + 124595110 A
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46744 1 -  40214260 A
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              38491 1 -   2180720 A
i dasNov3.JH569975          C 0 C 0
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e cerAty1.NW_012002657v1      1808781 0 -   1987038 C
e macNem1.NW_012011056v1      5349390 0 -   6271500 C
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac8.chr7               60353070 0 + 169600520 C

a score=29409.000000
s hg38.chr15_KI270850v1_alt    188203 4 +    430880 AAAA
s panTro5.chr15              17997820 4 -  83230942 AAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224136 4 -  99763055 AAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286806 4 +    378907 AAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142354 4 + 121039945 AAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353070 3 + 169600520 -GAA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349390 4 -   6271500 AAAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1808781 3 -   1987038 -GAA
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 223313 4 -   2853901 aaaa
i calJac3.chrY              C 0 I 1
s saiBol1.JH378276             504781 4 -   3282555 aaaa
i saiBol1.JH378276          C 0 I 1
s cebCap1.NW_016107979v1       290366 4 -   1024465 AAAA
i cebCap1.NW_016107979v1    C 0 I 524
s aotNan1.NW_018511953v1       736196 4 -   3745603 aaaa
i aotNan1.NW_018511953v1    C 0 I 1
s proCoq1.NW_012149419v1       643637 4 -   2566024 ATAA
i proCoq1.NW_012149419v1    I 3 I 1
s otoGar3.GL873530            6760587 1 -  36342412 ---A
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55174031 4 + 124595110 AAGA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46745 3 -  40214260 -AAA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              38492 4 -   2180720 AAAA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 920024 74 - 119751181 I
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=-13268.000000
s hg38.chr15_KI270850v1_alt    188207 5 +    430880 AACAT
s panTro5.chr15              17997824 5 -  83230942 AGCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224140 5 -  99763055 AGCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286810 4 +    378907 AA-AT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142358 4 + 121039945 AA-AT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353073 5 + 169600520 AACAT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349394 5 -   6271500 AACAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1808784 5 -   1987038 AACAT
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 223318 4 -   2853901 aaaa-
i calJac3.chrY              I 1 C 0
s saiBol1.JH378276             504786 4 -   3282555 aaaa-
i saiBol1.JH378276          I 1 C 0
s aotNan1.NW_018511953v1       736201 4 -   3745603 aaaa-
i aotNan1.NW_018511953v1    I 1 C 0
s proCoq1.NW_012149419v1       643642 4 -   2566024 AACA-
i proCoq1.NW_012149419v1    I 1 C 0
s otoGar3.GL873530            6760589 5 -  36342412 AACAT
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  55174035 3 + 124595110 GGT--
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              38496 4 -   2180720 AAAA-
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 920024 74 - 119751181 I
e canFam3.chr30                 46748 0 -  40214260 C
e cebCap1.NW_016107979v1       290370 524 -   1024465 I
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=435805.000000
s hg38.chr15_KI270850v1_alt    188212 61 +    430880 TCTGTCTTTTCTCTCTGG-TTTTGTCACTGAT----AGAGACCATC-A----AGACAGGCTTCCTAT-TACC
s panTro5.chr15              17997829 65 -  83230942 TCTGTCTTTTCTCTCTGG-TTTTGACACTGATAGTGAGAGACCATC-A----AGACAGGCTTCCTAT-TACC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224145 65 -  99763055 TCTGTCTTTTCTCTCTGG-TTTTGACACTGATAGTGAGAGACCATC-A----AGACAGGCTTCCTAT-TACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286814 61 +    378907 TCTGTCTTTTCTCTCTGG-TTTTGTCACTGAT----AGAGACCATC-A----AGACAGGCTTCCTAT-TACC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142362 65 + 121039945 TCTGTCTTTTCTCTCTGG-TTTTGACACTGATAGTAAGAGACCATC-A----AGACAGGCTTCCTAT-TAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353078 65 + 169600520 TCTGTCTTTTCTCTCTGG-TTTTGACAGTCGTAGTAAGAGACCTTC-A----AGATAGGCTTCCTAT-TAGC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349399 67 -   6271500 TCTGTCTTTTCTCTCTGGTTTTTGACACTGATAGTAAGAGACCTTCTA----AGATAGGCTTCCTAT-TAGC
i macNem1.NW_012011056v1    C 0 I 1
s cerAty1.NW_012002657v1      1808789 65 -   1987038 TCTGTCTTTTCTCTCTGG-TTTTGACAGTCGTAGTAAGAGACCTTC-A----AGATAGGCTTCCTAT-TAGC
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 223322 66 -   2853901 TCTGTCTTTTCTCTCTGG-TTTTGACACTCATAGTAAAAGGCAATC-A----AGATAGGCTTCCTATATAGG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             504790 66 -   3282555 TCTGTCTTTTCTCTCTGG-TTTTGACACTCATAGTAAAAGGCAATC-G----AGATAGGCTTCCTCTACAGG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       290894 66 -   1024465 TCTGTCTTTTCTCTCTGG-TTTTGACACTCATAGTAAAAGGCAATC-A----AGATAGGCTTCCTATATAGG
i cebCap1.NW_016107979v1    I 524 C 0
s aotNan1.NW_018511953v1       736205 66 -   3745603 TCTGTGTTTTCTCTCTGG-TTTTGACACTCATAGTAAAAGGCAATC-A----AGATAGGCTTCCTATATAGG
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       643646 62 -   2566024 ---TTCTTTTCTCTTTGG-TTCTGACACCTGTAGTAAGAGGCC-TC-G----AGGTGGACTTCCTGTATAGG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6760594 62 -  36342412 --TTTCTTTTCTCTCTGG-TTCTGGCATC--TACTAAGAAGCCATC-A----AGTTAGGCTTCCTATGTAGG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55174038 57 + 124595110 TTTTCCTTTTCTCTTTGG-TTCT-------------ACTGCCCATC-AGGGTAGATAGGGTTCCTATAGAAT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46748 61 -  40214260 TGTGTCTTTTCTCTCTGG-TTCTGACACCCCTAGTAAGAGGTCATC-A----GATTAGGCCTCCTGT-----
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              38500 51 -   2180720 ---ATCTCTTCTCTCTGG-TCCTCATACCAATACTAAGAGCCCATC-A----AAGCATAC------------
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 920024 74 - 119751181 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=318195.000000
s hg38.chr15_KI270850v1_alt    188273 35 +    430880 AGAGTGATCCTTACCAACTATAGTTGGGACAAGTA
s panTro5.chr15              17997894 34 -  83230942 AGAGTGATCCTTACCAACTATAGTTGGGAC-AGTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224210 34 -  99763055 AGAGTGATCCTTACCAACTATAGTTGGGAC-AGTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286875 35 +    378907 AGAGTGATCCTTACCAACTATAGTTGGGACAAGTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142427 35 + 121039945 AGAGTGATCCTTACCAACTATAGTTGGGACAAGTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353143 35 + 169600520 TGAGTGATCCTTACCAACTATAGTTGGGACAAGTG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349467 34 -   6271500 GGAGTGATCCTT-CCAACTATAGCTGGGACAAGTA
i macNem1.NW_012011056v1    I 1 C 0
s cerAty1.NW_012002657v1      1808854 35 -   1987038 TGAGTGATCCTTACCAACTATAGTTGGGACAAGTG
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 223388 35 -   2853901 AGAGTGGTTGTTACCAACTGTAGTTAGGACAAGTA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             504856 35 -   3282555 AGAGTAATTGTTACCAACTGTAGTTAGGACAAGTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       290960 35 -   1024465 AGAGTGATTGTTACCAACTGTAGTTAGGAAAAGTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       736271 35 -   3745603 AGAGTGATTGTTACCAACTGTAGTTAGGACAAGTA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 920098 35 - 119751181 AGAGCGATCCTTGCCAACTGTAGTTGGGACAAGTA
i micMur3.chr3              I 74 I 188
s proCoq1.NW_012149419v1       643708 35 -   2566024 AGGGCGATCCTTACTGACTGTAGTTGGGACAAGTA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6760656 35 -  36342412 AGAGTGATCTTTACCAACCGTAGCTGGGACAAGTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55174095 24 + 124595110 AGAATGGTCCTT--------TAATTAGAGCAA---
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46809 28 -  40214260 -------TCCTTACCAGCTGTAGTTGGAACAAATA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              38551 34 -   2180720 -ACATGATTTTTACCATCTGTAGTTGGAACAAATA
i dasNov3.JH569975          C 0 C 0
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=43887.000000
s hg38.chr15_KI270850v1_alt    188308 7 +    430880 CAGTGAG
s panTro5.chr15              17997928 7 -  83230942 CAGTGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224244 7 -  99763055 CAGTGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286910 7 +    378907 CAGTGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142462 7 + 121039945 CAGTGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353178 7 + 169600520 TTGTGAA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349501 7 -   6271500 AGGTGAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1808889 7 -   1987038 TTGTGAA
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 223423 7 -   2853901 CAGTAAA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             504891 7 -   3282555 CAGTAAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       290995 7 -   1024465 CAGTAAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       736306 7 -   3745603 CAGTAAA
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       643743 7 -   2566024 CAGCAAA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6760691 7 -  36342412 TAGCAAG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 46837 7 -  40214260 CAGCAAG
i canFam3.chr30             C 0 I 42
s dasNov3.JH569975              38585 7 -   2180720 TAGCAAA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 920133 188 - 119751181 I
e mm10.chr9                  55174119 0 + 124595110 C
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=21874.000000
s hg38.chr15_KI270850v1_alt    188315 3 +    430880 GAA
s panTro5.chr15              17997935 3 -  83230942 GAA
i panTro5.chr15             C 0 I 4
s panPan2.chr15              17224251 3 -  99763055 GAA
i panPan2.chr15             C 0 I 4
s gorGor5.CYUI01015946v1       286917 3 +    378907 GAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142469 3 + 121039945 GAA
i nomLeu3.chr6              C 0 I 4
s rheMac8.chr7               60353185 3 + 169600520 GAA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349508 3 -   6271500 GGA
i macNem1.NW_012011056v1    C 0 I 4
s cerAty1.NW_012002657v1      1808896 3 -   1987038 GAA
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 223430 3 -   2853901 GAT
i calJac3.chrY              C 0 I 4
s saiBol1.JH378276             504898 3 -   3282555 GAA
i saiBol1.JH378276          C 0 I 308
s cebCap1.NW_016107979v1       291002 3 -   1024465 GAA
i cebCap1.NW_016107979v1    C 0 I 4
s aotNan1.NW_018511953v1       736313 3 -   3745603 GAA
i aotNan1.NW_018511953v1    C 0 I 4
s proCoq1.NW_012149419v1       643750 3 -   2566024 GAA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6760698 3 -  36342412 GAA
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              38592 3 -   2180720 GGG
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 920133 188 - 119751181 I
e mm10.chr9                  55174119 0 + 124595110 C
e canFam3.chr30                 46844 42 -  40214260 I
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=17059.000000
s hg38.chr15_KI270850v1_alt    188318 2 +    430880 TG
s panTro5.chr15              17997942 2 -  83230942 TG
i panTro5.chr15             I 4 C 0
s panPan2.chr15              17224258 2 -  99763055 TG
i panPan2.chr15             I 4 C 0
s gorGor5.CYUI01015946v1       286920 2 +    378907 TG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142476 2 + 121039945 TG
i nomLeu3.chr6              I 4 C 0
s rheMac8.chr7               60353188 2 + 169600520 TG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349515 2 -   6271500 TT
i macNem1.NW_012011056v1    I 4 C 0
s cerAty1.NW_012002657v1      1808899 2 -   1987038 TG
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 223437 2 -   2853901 TG
i calJac3.chrY              I 4 C 0
s saiBol1.JH378276             505209 2 -   3282555 TG
i saiBol1.JH378276          I 308 C 0
s cebCap1.NW_016107979v1       291009 2 -   1024465 TG
i cebCap1.NW_016107979v1    I 4 C 0
s aotNan1.NW_018511953v1       736320 2 -   3745603 TG
i aotNan1.NW_018511953v1    I 4 C 0
s proCoq1.NW_012149419v1       643753 2 -   2566024 TG
i proCoq1.NW_012149419v1    C 0 I 4
s otoGar3.GL873530            6760701 2 -  36342412 TG
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              38595 2 -   2180720 TG
i dasNov3.JH569975          C 0 I 154
e micMur3.chr3                 920133 188 - 119751181 I
e mm10.chr9                  55174119 0 + 124595110 C
e canFam3.chr30                 46844 42 -  40214260 I
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=24345.000000
s hg38.chr15_KI270850v1_alt    188320 13 +    430880 ATCCTTCAAACAG
s panTro5.chr15              17997944 13 -  83230942 ATCCTTCAAACAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224260 13 -  99763055 ATCCTTCAAACAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286922 13 +    378907 ATCCTTCAAACAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142478 13 + 121039945 ATCCTTCAAACAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353190 13 + 169600520 GTTCTTCAAACAA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349517 13 -   6271500 GATTTTCCAACAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1808901 13 -   1987038 GTTCTTCAAACAA
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 223439 11 -   2853901 ATTCTTTAA--AA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             505211 11 -   3282555 ATTCTTTAA--AA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       291011 10 -   1024465 ATTCTTT-A--AA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       736322 11 -   3745603 ATTCTTTAA--AA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6760703  5 -  36342412 ----TGTAA----
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55174119 11 + 124595110 --CTTTCCAGCAG
i mm10.chr9                 C 0 C 0
e micMur3.chr3                 920133 188 - 119751181 I
e proCoq1.NW_012149419v1       643755  4 -   2566024 I
e dasNov3.JH569975              38597 154 -   2180720 I
e canFam3.chr30                 46844 42 -  40214260 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=744571.000000
s hg38.chr15_KI270850v1_alt    188333 125 +    430880 AAGTGGCCCCTCCA-TTATTTGG-ATTGTGTTTGTGGCTTTCTCGCGCccagcagtctga------------------ttccatctgctttgt---------------------atct-tctagcatgtccttatagttttggtt--cactaagggtattcttt----ttgta
s panTro5.chr15              17997957 125 -  83230942 AAGTGGTCCCTCCA-TTATTTGG-ATTGTGTTTGTGgctttcttgagcccagcagtctga------------------ttccatctgttttgt---------------------atct-tctagcatgtccttacagttttggtt--cactaagggtattcttt----ttgta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224273 125 -  99763055 AAGTGGTCCCTCCA-TTATTTGG-ATTGTGTTTGTGGCTTTCTTGAGCccagcagtctga------------------ttccatctgctttgt---------------------atct-tctagcatgtccttacagttttggtt--cactaagggtattcttt----ttgta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       286935 125 +    378907 AAGTGGTCCCTCCA-TTATTTGG-ATTGGGTTTGTGGCTTTCTCGAGCccagcagtctga------------------ttccatctgctttgt---------------------atct-tctagcatgtccttatagttttggtt--cactaagggtattcttt----ttgta
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142491 124 + 121039945 AAGTGGTCCCTCCA-TTATTTGG-ATTGGGTTTGTGGCTTTCTCGAGCccagcagtctga------------------ttccatctgctttgt---------------------atct-tctagcatgcccttatagttttggtt--cact-agagtattgttt----ttgta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353203 125 + 169600520 AAGTGGTCCCTCCA-TTATTTGG-ATTGGGTTTGTGGCTTTCTCGAGCccagcagtctga------------------ttccatctgctttgt---------------------atct-tccagtatgtccttatagttttggtt--cactaagggtattcttt----ttata
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349530 120 -   6271500 AA-TGGTCCCT-CA-TTATTTGGAATTGGGTTTGTGGCTTTCTTGAGTCCAGCAGTCTG-------------------TTCCATCTG--TTGT---------------------ATCT-T-CAGCATG--CCTATAGTTTTGGTTTCCACTAAGGGTATTCTTT----TTGTA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1808914 125 -   1987038 AAGTGGTCCCTCCA-TTATTTGG-ATTGGGTTTGTGgctttctcgagcccagcagtctga------------------ttccatctgctttgt---------------------atct-tccagcatgtccttatagttttggtt--cactaagggtattcttt----ttata
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 223450 129 -   2853901 AAGTGGTCTCTCCA-TTATTTGT-ATTGGGATTGTGGCTTTCTCAAGCCCAGCAGTCTGA------------------TTACATCTGCTTTGT---------------------GTCT-TCCAGTGTGTCCCTGTCGTTTTGGTT--CACCAAGGATATTCATTCTCCTTGTA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             505222 130 -   3282555 AAGTGGTCCCTCCATTTATTTGG-ATTGGGATTGTGGCTTTCTCAAGCCCGGCATTCTGA------------------TTACATCTGCTTTGT---------------------GCCT-TCCAGTGTGTCCTTGTAGTTTTGGTT--CACCAAGGGTATTCATTCTCCTTGTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       291021 129 -   1024465 AAGTGGTCCCTCCA-TTATTTGG-ATTGGGATTGTGGCTTTCTCAAGCCCAGCAGTCTGA------------------TGACATCTGCTTTGT---------------------GTCT-TCCATTGTGTCCCTGTAGTGTTGGTT--CACCAAGGGTATTCATTCTCCTTGTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       736333 129 -   3745603 AAGTGGTCCCTCCA-TTATTTGG-ATTGGGATTGTGgctttctcaaacccagcagtctga------------------ttacatctgctttgt---------------------gtct-tccagtgtgtccctgtagttttggtt--caccaagggtattcattttccttgta
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       643759 124 -   2566024 AAGTGGCCcctccg-ttgtccgg-actggg-ttgtggctttctcaagactcgcagtctga------------------ttccatctgctttat---------------------gtct-tctaacatttccctatagttgtggtt--cgctgatggtgcccttc----ttgtg
i proCoq1.NW_012149419v1    I 4 C 0
s otoGar3.GL873530            6760708 123 -  36342412 AGTGGGCCcctcct-ttgtctgg-actggg-ttgtgccttcctcaagaccagcagtttaa-------------------tccatttactttgg---------------------gtct-tctaatgtttccctggcgttgtggtt--cattggtggcacctttc----ttgtg
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55174130 148 + 124595110 -----TTCATTCAG-TTGTTTTC--------CTGTGGCTTTCTC-AGTCAGGACATCTAAAACTTTAGCAACCATAGGATCCATCTGCTCTGTCTGCCGCTGCTATAGTTGTGGGTCTGTATATTGTTTTTCTATAGTTGTGGGT--CTGTAA----ATTGTTT----TTCTA
i mm10.chr9                 C 0 I 188
e micMur3.chr3                 920133 188 - 119751181 I
e dasNov3.JH569975              38597 154 -   2180720 I
e canFam3.chr30                 46844  42 -  40214260 I
e colAng1.NW_012118866v1       727100   0 -    764599 I
e manLeu1.NW_012105520v1       297089   1 -   1458659 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=181684.000000
s hg38.chr15_KI270850v1_alt    188458 47 +    430880 tttgttgttttgctgctgctgca-gctgacttactc--------------tc-------tttt----ataaaa
s panTro5.chr15              17998082 46 -  83230942 tttgttgttttgctgctgctgca-gccgacttactc--------------tc--------ttt----ataaag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224398 46 -  99763055 tttgttgttttgctgctgctgca-gccgacttactc--------------tc--------ttt----ataaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287060 48 +    378907 tttgttgttttgctgctgctgcaggccgacttactc--------------tc-------tttt----ataaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142615 47 + 121039945 tttgttgttttgctgctgctgca-gccgacttactc--------------tc-------tttt----atgaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353328 47 + 169600520 tttgttatttttctgctgctgca-gcagacttagtg--------------tc-------tttt----ataaaa
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349650 47 -   6271500 TTGTTGTTTTGGCTGCTGCAGCA-GCACACTTACTC--------------TC-------TTTT----ATAAAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1809039 47 -   1987038 tttgttatttttctgctgctgca-gcagacttagtg--------------tc-------tttt----ataaaa
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 223579 51 -   2853901 TTTGTTTTTTTTCTGCTGCTGCA-GTGGACTTACCC--------------TT-------TTTTTTAAATAAAA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             505352 65 -   3282555 TTTGTTGTTTTTCTGCTGCTGCA-ATGGACTTACCCtttttttttttttttt-------ttttttAAATAAAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       291150 56 -   1024465 TTTGTTGTTTTTCTGCTGCTGCA-GTGGACTTACCC---------TTTTTTT-------TTTTTTAAATAAAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       736462 57 -   3745603 tttgttgtttttctgctgctgca-gtggacttaccc--------tttttttt-------ttttttaaataaaa
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       643883 51 -   2566024 tttgctgttttcctagtgccgtg-aca---ttactt--------------tt----tttttttttaaataaaa
i proCoq1.NW_012149419v1    C 0 I 3
s otoGar3.GL873530            6760831 48 -  36342412 tttg-tggggttttagtgcta----------tactt--------------ttaaaaaaattttttaaataaaa
i otoGar3.GL873530          C 0 I 3
e micMur3.chr3                 920133 188 - 119751181 I
e mm10.chr9                  55174278 188 + 124595110 I
e dasNov3.JH569975              38597 154 -   2180720 I
e canFam3.chr30                 46844 42 -  40214260 I
e colAng1.NW_012118866v1       727100  0 -    764599 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=73702.000000
s hg38.chr15_KI270850v1_alt    188505 8 +    430880 ttctgtca
s panTro5.chr15              17998128 8 -  83230942 ttctgtca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224444 8 -  99763055 ttctgtca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287108 8 +    378907 ttctgtca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142662 8 + 121039945 ttctgtca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353375 8 + 169600520 ttatgtca
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349697 8 -   6271500 TTCTGTCA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1809086 8 -   1987038 ttatgtca
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 223630 8 -   2853901 TTCTGTCA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             505417 8 -   3282555 TTCTGTCA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       291206 8 -   1024465 TTCTGTCA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       736519 8 -   3745603 ttctgtca
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 920321 8 - 119751181 ttctgtca
i micMur3.chr3              I 188 C 0
s proCoq1.NW_012149419v1       643937 8 -   2566024 ttctgtca
i proCoq1.NW_012149419v1    I 3 C 0
s otoGar3.GL873530            6760882 8 -  36342412 ttctgtca
i otoGar3.GL873530          I 3 C 0
e mm10.chr9                  55174278 188 + 124595110 I
e dasNov3.JH569975              38597 154 -   2180720 I
e canFam3.chr30                 46844 42 -  40214260 I
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=1506982.000000
s hg38.chr15_KI270850v1_alt    188513 214 +    430880 tttcagtggggttttagaaagaggaccaggtCACATCTTGAAATGAAATTAATCTTAGGATTTCACAgccctaactcactttttgttttgattaaattacttccccttttt----gacgggataggggctcagctttctcatgtgtaaaatgaaggctagtaactgggctagTGGTGACAGAC-CCAGA-------TGCATGTGAGAATCACCTCAGAGAGATTTT
s panTro5.chr15              17998136 212 -  83230942 tttcagtggggttttagaaagagggCCAAGTCACGTCCTGAAATGAAATTAATCTTAGGATTTCACAGCCCTAACTCACTTTTTGTTTTGATTAAATTACTTCCCCTTTTT----GATGGGGTAGGGGCTCAGCTATCTCA--TGTAAAATTAAGGCTAGTAACTGGGCTAGTGGTGACAGAC-CCAGA-------tgcatgtgagaatcacctcagagagctttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224452 212 -  99763055 tttcagtggggttttagaaagagggCCAAGTCACGTCCTGAAATGAAATTAATCTTAGGATTTCACAGCCCTAACTCACTTTTTGTTTTGATTAAATTACTTCCCCTTTTT----GATGGGGTAGGGGCTCAGCTATCTCA--TGTAAAATTAAGGCTAGTAACTGGGCTAGTGGTGACAGAC-CCAGA-------tgcatgtgagaatcacctcagagagctttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287116 214 +    378907 tttcagtggggttttagaaagaggaccaggtCACATCTTGAAATGAAATTAATCTTAGGATTTCACAgccctaactcactttttgttttgattaaattacttccccttttt----gacggggtaggggctcagctttctcatgtgtaaaatgaaggctagtaactgggctagTGGTGACAGAC-CCAGA-------TGCATGTGAGAATCACCTCGGAGAGCTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142670 209 + 121039945 tttcagtggggttttagaaagaggaccaggtCACATCTTGAAATGAAATTAATCTTAGGATTTCACAgccctaactcactttttgttttgattaaattacttccccttttt----gacggggtaggggctcagctttctcatgtgtaaaatgaaggctggtaactgggctagTGGTGACAGAC-CCAGA-------TGCATGTGAGAATCA-----GAGAGCTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353383 214 + 169600520 tttcagtggggttttggaaagAGGACCAGACCATATCTTGAAATGAAATTAATCTTAAGATTTCACAgccctaaatcactttttgttttgattaaattacttcccgttttt----gagggggtaggggctcagctttctcatgtgtaaaatgaaggatagtaactgggctagTGGTGACAGAA-CCAGA-------TGTATTTGAGAATCACCTCAGAGAACATTT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349705 213 -   6271500 -TTCAGT-GGGTTTTAGAAAGAGGACCAGGTCA-ATCTTGAAATGAAATTAATCTTAGATTCTCACAGCCCTTAACTCATTTTTGTTTTGATTAAATTACTTTCCCCTTTTTGGAGGGGGGGAAGGGGCTCAGTTTCTCATTGTGTAGAATGAAGGATAGTAAATGGG-TAGTGTTGATAGGACCCAGA-------TGCA--TGTAAATCACCTCAGAAGGCTTTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1809094 214 -   1987038 tttcagtggggttttggaaagAGGACCAGACCATAGCTTGAAATGAAATTAATCTTAAGATTTCACAGCCctaaatcactttttgttttgattaaattacttcccattttt----gagggggtaggggctcagctttctcatgtgtaaaatgaaggatagtaactgggctagtggtgacagaa-ccaga-------tgtatttgagaatcacctcagagaacattt
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 223638 214 -   2853901 TTTCAGTGGGGTTTTGGAAAGAGGACCAGGCCAGATCTTGAAATGAAATTCATCTTAGGATTTCCCAGGCTTAACTCACTTTTTattttgattaaattacttactcttttt----gagggggtggagtctcagttttctcatgtgtgaaatgaagggtaataactgttctgATGGTTACAGAC-CTGGA-------TGCGTGTTACAGTCACCTCAGAGATCTTTT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             505425 214 -   3282555 TTTcagtggggttttggaaagaggaccagaccagatcttgaaatgaaattcatcttatgatttcccaggcttaactcactttttgttttgattaaattacttacccttttt----gagggggtgggggctcagttttttcatgtgtaaaatgaagggtagtaactggtctgATGGTTACAGAC-CTGGA-------TGCATGTTACAGTCACCTCAGAGATCTTTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       291214 214 -   1024465 TTTCcgtggggttttgggaagaggaccaggccagatcttgaaatgaaattcatcttaggatttcctaggcttaactcactttttgttttgattaaattacttatccttttt----gagggggtgggggctcagttttctcatgtgtaaaatgaagggtagtaactggtctgATGGTTACAGAC-CTGGA-------TGCGTGTTATAGTCAGCTCAGAGATCTTTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       736527 214 -   3745603 tttcaatggggttttggaaagAGGACCAGGCCAGATCTTGAAATGAAATTCATCTTAGGATTTCCCAGGCTTAACTCACTTTTTGTTTTGATTAAATTACTCACCCTTTTC----GAGGGGATGGGGGCTCAGCTTTCTGATGTGTGAAATGAAGAGTAGTAACTGGTCTGATGGTTACAGAC-CTGGA-------TGCATGTTACAGTCACCTCAGAGATCTTTT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 920329 210 - 119751181 ttttggtggggttttggaaagaaggtcaggGCACATCTTGGAATGAAATTCATCTTAGGATTTTACAACCctaactggctttgtgttttggttaaa----ttacccttttt----gagggggtggaggctcagcttactcatttgtaaaatgaaggataaggactgggttatGGGTCACAGAC-CTGGT-------TGCATGTTAGAAGCACGTCAGATTGCTTTT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       643945 213 -   2566024 ttttagtggggttttggaaagcaggccaggGCACATCTTGAAATGAAATTCATCTTAGGATTTTACAACCCTACctggctttgtgttttggttaaattacttacccttttt----gagggggtgg-ggctcagcttactcatttgtgaaatgaaggataaGGATGGGGTTATTGGTCACAGAC-CTGGT-------TGCATGTCAGAATCATGTCAGATTGCTTTT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6760890 174 -  36342412 tttttgtggagttttggaaagaaggccaggCCACATCTTGAAATGAAATTCATCTGAggcttttacagccttcactggctttgtgttttggttacatcacttatccctttt----gagggtgtagggactcagctttctcatttgtaaaatgaagg------------------------------------------------aaaattacctCAGGTTGCTTTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55174466 217 + 124595110 TTTCAATGAGCTTTTGAAAAGAAGCTAGCCTTGCTTGTTAAAATGAAG---GCCTTAGGACTTCATGAGCCTAATTGGCTTTGTGTTTTTGTCAAATTACTTATCCTTTGG----GGAAGGGTAT-TGCTTACCTTTCTCATTTATAAAATGTTAGGCAGGGACGAGTCTGATGGTCACAGAC-ATAGGCTAGAGCTGCATGTCAGAATCACCTAAAATGCTTTTT
i mm10.chr9                 I 188 C 0
e dasNov3.JH569975              38597 154 -   2180720 I
e canFam3.chr30                 46844  42 -  40214260 I
e colAng1.NW_012118866v1       727100   0 -    764599 I
e manLeu1.NW_012105520v1       297089   1 -   1458659 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=-6245.000000
s hg38.chr15_KI270850v1_alt    188727 2 +    430880 GC
s panTro5.chr15              17998348 2 -  83230942 gc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224664 2 -  99763055 gc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287330 2 +    378907 GC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142879 2 + 121039945 GC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353597 2 + 169600520 GC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349918 2 -   6271500 CA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1809308 2 -   1987038 gc
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 223852 2 -   2853901 TA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             505639 2 -   3282555 TA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       291428 2 -   1024465 TA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       736741 2 -   3745603 TA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 920539 2 - 119751181 TA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       644158 2 -   2566024 TA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6761064 2 -  36342412 TA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55174683 2 + 124595110 AA
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              38751 2 -   2180720 GC
i dasNov3.JH569975          I 154 C 0
e canFam3.chr30                 46844 42 -  40214260 I
e colAng1.NW_012118866v1       727100 0 -    764599 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=48312.000000
s hg38.chr15_KI270850v1_alt    188729 4 +    430880 AAAA
s panTro5.chr15              17998350 4 -  83230942 aaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224666 4 -  99763055 aaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287332 4 +    378907 AAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142881 4 + 121039945 AAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353599 4 + 169600520 AAAA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349920 4 -   6271500 AAAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1809310 4 -   1987038 aaaa
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7469463 4 -   9444221 aaaa
i colAng1.NW_012112253v1    n 0 C 0
s calJac3.chrY                 223854 4 -   2853901 AAAA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             505641 4 -   3282555 AAAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       291430 4 -   1024465 AAAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       736743 4 -   3745603 AAAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 920541 4 - 119751181 AAAG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       644160 4 -   2566024 AAAG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6761066 4 -  36342412 AAAA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55174685 4 + 124595110 AAAA
i mm10.chr9                 C 0 I 890
s dasNov3.JH569975              38753 4 -   2180720 AACA
i dasNov3.JH569975          C 0 C 0
e canFam3.chr30                 46844 42 -  40214260 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=251866.000000
s hg38.chr15_KI270850v1_alt    188733 40 +    430880 --GAGATTCTTT--GGGTAGGCTTTGAAATTAGCATTTCAAAAA
s panTro5.chr15              17998354 18 -  83230942 --cagattcttc--tg----------------------caaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224670 18 -  99763055 --cagattcttc--tg----------------------caaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287336 40 +    378907 --GAGATTCTTT--GGGTAGGCTTTGAAATTAGCATTTCAAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142885 40 + 121039945 --CAGATTCTTT--GGGTAGGCTTTGAAATTAGCATTTCAAAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353603 40 + 169600520 --CAGATTCTTT--GGGTAGGCTTTAAAATTAGCATTTCAAAAA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349924 36 -   6271500 --CAGATTCTTT--TGGGTAGCTT--GAATTAGCATTTC--AAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1809314 40 -   1987038 --cagattcttt--gggtaggctttaaaatTAGCATTTCAAAAA
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7469467 40 -   9444221 --CAGATTCTCT--GGGTAGGCTTTGAAATGAGCATTTCAAAAA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 223858 40 -   2853901 --CGGATTCTCC--GGGTGGGCTTTGAAATTAACATTTCAAAAA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             505645 40 -   3282555 --TGGATTCTCT--GGGTAGGCTTTGAAATTAACATTTCAAAAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       291434 40 -   1024465 --CGGATTCTCT--GGGTAGGCTTTGAAATTAACATTTCAAAAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       736747 40 -   3745603 --CGGATTCTCT--GGGTAGGCTTTGAAATTAACATTTAAAAAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 920545 41 - 119751181 --CAGATTCTTT-AGGGTAGGCTTTGAAATTAGCATTTAAAAAA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       644164 41 -   2566024 --CAGATTCTTT-AGGGTAGGCTTTGAAATTAGCATTTTAAAAA
i proCoq1.NW_012149419v1    C 0 I 693
s otoGar3.GL873530            6761070 30 -  36342412 --CAGATTCTCTGGGGGTAGGCTTTGAAATGA------------
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              38757 42 -   2180720 GACTAATCTCTG--AGGTGGCCTTTGAAAATAACATTTCAAAAG
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55174689 890 + 124595110 I
e canFam3.chr30                 46844 42 -  40214260 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=14482.000000
s hg38.chr15_KI270850v1_alt    188773 2 +    430880 TG
s panTro5.chr15              17998372 2 -  83230942 tg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224688 2 -  99763055 tg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287376 2 +    378907 TT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142925 2 + 121039945 TG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353643 2 + 169600520 TG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5349960 2 -   6271500 TG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1809354 2 -   1987038 TG
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7469507 2 -   9444221 TG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 223898 2 -   2853901 TT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             505685 2 -   3282555 TG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       291474 2 -   1024465 TG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       736787 2 -   3745603 TG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 920586 2 - 119751181 TG
i micMur3.chr3              C 0 I 310
s dasNov3.JH569975              38799 2 -   2180720 TG
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       644205 693 -   2566024 I
e mm10.chr9                  55174689 890 + 124595110 I
e canFam3.chr30                 46844 42 -  40214260 I
e otoGar3.GL873530            6761100 0 -  36342412 C
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=893731.000000
s hg38.chr15_KI270850v1_alt    188775 139 +    430880 CTCTTTCAACCATTGAT-GCAACCAAATTTTTTGGGACTTT--GAGGCT-AGGTATATATTCTTTAGATACCCAGAATAAT-TGGCTTTGGAATATAAGAATTTAGGGAAA---TGAAGAA-GGGGTGAATT---ACA-TTTTGGAAGCTTC
s panTro5.chr15              17998374 139 -  83230942 ctctttcaaccactgat-gcaaccaaattctttgggacttt--gaggct-aggtatatattctttagatacccagaataat-tGGCTTTGGAATATAAGAATTTAGGGAAA---TGAAGAA-GGGGTGAATT---ACA-TTTTGGAAGCTGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224690 139 -  99763055 ctctttcaaccactgat-gcaaccaaattctttgggacttt--gaggct-aggtatatgttctttagatacccagaataat-tGGCTTTGGAATATAAGAATTTAGGGAAA---TGAAGAA-GGGGTGAATT---ACA-TTTTGGAAGCTGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287378 139 +    378907 CTCTTTCAACCATTGAT-GCAACCAAACTTTTTGGGACTTT--GAGGCT-AGGTATATATTCTTTAGATACCCAGAATAAT-TGGCTTTGGAATATAAGAATTTAGGGAAA---TGAAGAA-GGGGTGAATT---ACA-TTTTGGAAGCTTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102142927 139 + 121039945 CTCTTTCAACCACTGAT-GCAACCAAATTCTTTGGGACTTT--GAGGCT-AGGTATATATTCTTTAGATACCCAGAATTAT-TGGCTTTGGAATATAAGAATTTAGGGAAA---TGAAGAA-GGGGTGAATT---ACG-TTTTGGAAGCTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353645 138 + 169600520 TTCTTTCGACCACTGAT-GTAACCAAACTCTTTGTGACTTT--GAGGCT-GGGTATATATTC-TTTAGTACCCAGAATAAT-TAGATTTGGAATATAACAATGTAGGGAAA---TGAAGAA-GGGGCGAATT---ACA-TTTTGGAAGCTGC
i rheMac8.chr7              C 0 I 207
s macNem1.NW_012011056v1      5349962 145 -   6271500 CTGTTTCAACCATTGATGGCAACCAGATTCTTTGGGACCTTTGGAGGCTAGGGTATATATTT-TTAGATACCCCAAATAAT-TGGATTTGGAATATAACAATTTTAGGAAAATGTGAAGAAGGGGGTGAATT---CTT-TTTGGGAGGCTG-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1809356 139 -   1987038 TTCTTTCGACCACTGAT-GTAACCAAACTCTTTGTGACTTT--GAGGCT-GGGTATATATTCTTTAGATACCCAGAATAAT-TGGATTTGGAATATAACAATGTAGGGAAA---TGAAGAA-GGGGCGAATT---ACA-TTTTGGAAGCTGC
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7469509 139 -   9444221 CTCTTTCAATCACTGAT-GCAACCAAAGTCTTTGGGACTTT--TAGACT-AAGTATATATTCTTTAGATACTCAGAATAGT-TTGATTTGGAATGTAACAATTTAAGGAAA---TGAAGAA-GGGGTGAATT---ATA-TTTTGGAAGCTGC
i colAng1.NW_012112253v1    C 0 I 207
s calJac3.chrY                 223900 139 -   2853901 CTCTTTCAACCATTGTT-GCTACCAATCTCTTTGGGACTGT--TAGGTT-AGTTATATATTCTTTAGATACCCAGAACAGT-TGGATTTGGAATATAACAATTTAGAGAAA---CGAAGGA-GGGGTGCATT---ACA-TTTTGGAAGCTGC
i calJac3.chrY              C 0 I 209
s saiBol1.JH378276             505687 139 -   3282555 CTGTTTCAACCATTGTT-GCTACCAAACTCTTTGGGACTTT--TAGGTT-AGGTATATATTCTTTAGATACCCAGAACAGT-TGGATTTGGAATATAACAATGTAGAGAAA---CGAAGAA-GGGGTGCATT---ACA-TTTTGGAAGCTGC
i saiBol1.JH378276          C 0 I 208
s cebCap1.NW_016107979v1       291476 139 -   1024465 CTCTTTCAACCATTGTT-GCTACCAAACTCTTTGGGACTTT--TAGGTT-AGGTATATATTCTTTAGATACCCAGAACAGT-TGGATTTGGAATATAACAATTTAGGGAAA---TGAAGAA-GGGGTGCATT---ACA-TTTTGGAAGCTGC
i cebCap1.NW_016107979v1    C 0 I 208
s aotNan1.NW_018511953v1       736789 139 -   3745603 CTCTTTCAACCATTGTT-GCTACCAAACTCTTTGAGACTTT--TAGGTT-AGGTATATATTCTTTAGATACCCAGAACAGT-TGGATTTGGAATATAACAATTTAGGGAAA---TGAAGAA-GGGGTGCATT---ACA-TTTTAGAAGCTGC
i aotNan1.NW_018511953v1    C 0 I 208
s otoGar3.GL873530            6761100 116 -  36342412 CTCTGTCA-----------------------TTGGAACTTC---AGGCT-AAG--TATGTTCTTTAGATCCCCAACACAGT-CTGATTTGGAATGTAGAAGTTAATAGAAG---TGAA-AA-GGAGGGAACTGTAACA-TTTTGGGAGCTGC
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              38801 137 -   2180720 TTCTTTCAGTCATT-AT-GTACCTACACTTTTTGTGACTTT--TATGCT-TAG--TTTGTTTTTTAGATACCTACCAAAATATTGTTTTGGAATATATAGAT-TAGAGAAA---TGAAGAA-AGAGTGAATC---ACTCTTTTGAGAGCTAC
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 920588 310 - 119751181 I
e proCoq1.NW_012149419v1       644205 693 -   2566024 I
e mm10.chr9                  55174689 890 + 124595110 I
e canFam3.chr30                 46844  42 -  40214260 I
e manLeu1.NW_012105520v1       297089   1 -   1458659 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=9555.000000
s hg38.chr15_KI270850v1_alt    188914 1 +    430880 T
s panTro5.chr15              17998513 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224829 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287517 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143066 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353990 1 + 169600520 T
i rheMac8.chr7              I 207 C 0
s macNem1.NW_012011056v1      5350107 1 -   6271500 T
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1809495 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7469855 1 -   9444221 T
i colAng1.NW_012112253v1    I 207 C 0
s calJac3.chrY                 224248 1 -   2853901 T
i calJac3.chrY              I 209 C 0
s saiBol1.JH378276             506034 1 -   3282555 T
i saiBol1.JH378276          I 208 C 0
s cebCap1.NW_016107979v1       291823 1 -   1024465 T
i cebCap1.NW_016107979v1    I 208 C 0
s aotNan1.NW_018511953v1       737136 1 -   3745603 T
i aotNan1.NW_018511953v1    I 208 C 0
s otoGar3.GL873530            6761216 1 -  36342412 T
i otoGar3.GL873530          C 0 I 202
s dasNov3.JH569975              38938 1 -   2180720 T
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 920588 310 - 119751181 I
e proCoq1.NW_012149419v1       644205 693 -   2566024 I
e mm10.chr9                  55174689 890 + 124595110 I
e canFam3.chr30                 46844 42 -  40214260 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=12000.000000
s hg38.chr15_KI270850v1_alt    188915 1 +    430880 G
s panTro5.chr15              17998514 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224830 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287518 1 +    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143067 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353991 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5350108 1 -   6271500 G
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1809496 1 -   1987038 G
i cerAty1.NW_012002657v1    C 0 I 207
s colAng1.NW_012112253v1      7469856 1 -   9444221 G
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 224249 1 -   2853901 G
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             506035 1 -   3282555 G
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       291824 1 -   1024465 G
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       737137 1 -   3745603 G
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6761419 1 -  36342412 G
i otoGar3.GL873530          I 202 C 0
s mm10.chr9                  55175579 1 + 124595110 G
i mm10.chr9                 I 890 I 1
s dasNov3.JH569975              38939 1 -   2180720 G
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 920588 310 - 119751181 I
e proCoq1.NW_012149419v1       644205 693 -   2566024 I
e canFam3.chr30                 46844 42 -  40214260 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=33840.000000
s hg38.chr15_KI270850v1_alt    188916 3 +    430880 CTT
s panTro5.chr15              17998515 3 -  83230942 CTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224831 3 -  99763055 CTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287519 3 +    378907 CTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143068 3 + 121039945 CTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353992 3 + 169600520 CTT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5350109 3 -   6271500 CTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1809704 3 -   1987038 CTT
i cerAty1.NW_012002657v1    I 207 C 0
s colAng1.NW_012112253v1      7469857 3 -   9444221 CTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 224250 3 -   2853901 CTT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             506036 3 -   3282555 CTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       291825 3 -   1024465 CTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       737138 3 -   3745603 CTT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6761420 3 -  36342412 CTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55175581 3 + 124595110 CTT
i mm10.chr9                 I 1 C 0
s dasNov3.JH569975              38940 3 -   2180720 CTT
i dasNov3.JH569975          C 0 I 198
e micMur3.chr3                 920588 310 - 119751181 I
e proCoq1.NW_012149419v1       644205 693 -   2566024 I
e canFam3.chr30                 46844 42 -  40214260 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=5190.000000
s hg38.chr15_KI270850v1_alt    188919 1 +    430880 A
s panTro5.chr15              17998518 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224834 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287522 1 +    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143071 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353995 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5350112 1 -   6271500 A
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1809707 1 -   1987038 G
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7469860 1 -   9444221 A
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 224253 1 -   2853901 A
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             506039 1 -   3282555 A
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       291828 1 -   1024465 A
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       737141 1 -   3745603 A
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6761423 1 -  36342412 G
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              39141 1 -   2180720 A
i dasNov3.JH569975          I 198 C 0
e micMur3.chr3                 920588 310 - 119751181 I
e proCoq1.NW_012149419v1       644205 693 -   2566024 I
e mm10.chr9                  55175584 0 + 124595110 C
e canFam3.chr30                 46844 42 -  40214260 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=304706.000000
s hg38.chr15_KI270850v1_alt    188920 38 +    430880 GATACT-GCTGAGACCTTTGTTGGT----CTTGATTTCT-GGAT
s panTro5.chr15              17998519 38 -  83230942 GATACT-GCTGAGACCTTTGTTGGT----CTTCATTTCT-GGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224835 38 -  99763055 GATACT-GCTGAGACCTTTGTTGGT----CTTCATTTCT-GGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287523 38 +    378907 GATACT-GCTGAGACCTTTGTTGGT----CTTGATTTCT-GGAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143072 38 + 121039945 GATGCT-GCTGAGACCTTTGTTGGT----CTTGATTTCT-GGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60353996 38 + 169600520 GATACT-CCTGAGACCTTTGTTGGT----CTTGATTTCT-GGAT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5350113 40 -   6271500 GATGCTGGCTGGACCGTTTCTTGGT----CTTGATTTCTGGGAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1809708 38 -   1987038 GATACT-CCTGAGACCTTTGTTGGT----CTTGATTTCT-GGAT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7469861 42 -   9444221 GATACT-GCTGAGACCTTTGTTGGTCTTGCTTGATCTCT-GTAT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 224254 42 -   2853901 GATAGA-GTTGAGACCTTTGTTGGTCTTACTTGATCTCT-GGAT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             506040 42 -   3282555 GATAGA-GTTGAGACCTTTGTTGGTCTTACTTGATCTCT-GGAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       291829 42 -   1024465 GATAGA-GTTGAGACCTTTGTTGGTCTTACTTGATCTCT-GGAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       737142 42 -   3745603 GATAGA-GTTGAGACCTTTGTTGGTCTTACATGATCTCT-GGAT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 920898 42 - 119751181 GATACT-GCTGAGATCTTTGTTGGTAAGATTTGATCTCT-GGAA
i micMur3.chr3              I 310 C 0
s otoGar3.GL873530            6761424 42 -  36342412 GATACT-GCTGAGATCTTTGTTGGTCTGATTTGATTTCT-GGAT
i otoGar3.GL873530          C 0 I 180
s mm10.chr9                  55175584 41 + 124595110 GAGACT-CCTAAGATC-CTGGTGTTCTGATTTGATCTCT-GAGT
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              39142 42 -   2180720 GATACT-GCTGAGATTGTTTTTGATCTGATTTGATATGT-GGAT
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       644205 693 -   2566024 I
e canFam3.chr30                 46844 42 -  40214260 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=546485.000000
s hg38.chr15_KI270850v1_alt    188958 63 +    430880 CCTAGTTTC-TAGATCTTT-T-ACATATTCTGAGTTCTAATCT--GAACTGGCCTTTATGGTTAAAGC
s panTro5.chr15              17998557 63 -  83230942 CCTAGTTTC-TTGATCTTT-T-ACATATTCTGGGTTCTAACCT--GAACTGGCCTTTATGGTTAAAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224873 63 -  99763055 CCTAGTTTC-TTGATCTTT-T-ACATATTCTGGGTTCTAACCT--GAACTGGCCTTTATGGTTAAAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287561 63 +    378907 CCTAGTTTC-TAGATCTTT-T-ACATATTCTGAGTTCTAATCT--GAACTGGCCTTTATGGTTAAAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143110 63 + 121039945 CCTAGTTTC-TTGATCTTT-T-ACATATTCTGAGTTCTAACCT--GAACTGGCCTTTATGGTTAAAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60354034 59 + 169600520 CCTAGTTTC-TTGATCTTT-T-ACATATTCTGGGTTCTAACCT--GAACTGGC----ATGGTTAAAGA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5350153 64 -   6271500 CCTAGTTTCGTTGATCTTTAT-ACATA-TCTGGATTCTAACCT--GAACTGGCCTTAATGGTTAAAGA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1809746 59 -   1987038 CCTAGTTTC-TTGATCTTT-T-ACATATTCTGGGTTCTAACCT--GAACTGGC----CTGGTTAAAGA
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7469903 63 -   9444221 CATAGTTTC-TTGATATGT-T-ACATATTCTGGGTTCTAACCT--GAACTGGCCTTCATGGTTAAAGA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 224296 62 -   2853901 CCTAGTTTC-TTGATC-TT-T-ACATATTCTGAGTTCTAACCT--GAACTGGCCTTCATGTTTAAAGA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             506082 63 -   3282555 CCTAGTTTC-TTGATCTTT-T-ACATATTCTGGGTTCTAACCT--GAACTGGTCTTCGTGTTTAAAGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       291871 63 -   1024465 CCTAGTTTC-TTGATCTTT-T-ACATATTCTGGGTTCTAACCT--GAACTGGTCTTCGTGTTTGAAGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       737184 63 -   3745603 CCTAGTTTC-TTGATCTTT-T-ACATATTCTGTCTTCTAACCT--GAACTGGCCTTCATGTTTAAAGA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 920940 63 - 119751181 CCCAGTTTC-TTGATCTTT-T-AGATATTCTGGGTTCTAGCCT--AAGCTGGCCTTTCTGGTTAGAGA
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6761646 65 -  36342412 CCCAGTTTC-TTGATCTTT-T-AGATACTGTGGGTTCTAGCCTAAAAACTGGCCTTCGTGGTGAAAGG
i otoGar3.GL873530          I 180 C 0
s mm10.chr9                  55175625 63 + 124595110 CCTAGTTTC-TTGATGTTT-T-AGATATTCTGGGTCCCAAACT--AAACCTACCTTTATGAATACAGA
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              39184 64 -   2180720 CGTGAATTC-TTGGCCTTT-TAAGGTATTTTTGGTCCTAGCCT--AACCATACTTTTTTGGTTAAAGA
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       644205 693 -   2566024 I
e canFam3.chr30                 46844 42 -  40214260 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=122377.000000
s hg38.chr15_KI270850v1_alt    189021 21 +    430880 T--GCATAT---ATA-T-------------ACTGTGTCCT
s panTro5.chr15              17998620 21 -  83230942 T--GCATAT---ATA-T-------------ACTGTGTCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224936 21 -  99763055 T--GCATAT---ATA-T-------------ACTGTGTCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287624 21 +    378907 T--GCATAT---ATA-T-------------ACTGTGTCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143173 21 + 121039945 T--GTATTT---ATA-T-------------ACTGTATCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60354093 21 + 169600520 T--GCATTT---ATA-T-------------GCTGTGTCCT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5350217 23 -   6271500 TGCGCACTT---ATAGT-------------ACTATGT-CT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1809805 21 -   1987038 T--GCATTT---ATA-T-------------GCTGTGTCCT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7469966 21 -   9444221 T--GCATTT---ATA-T-------------ACTGTGCACT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 224358 21 -   2853901 T--GCATTT---TTA-T-------------AGTGTGTCCT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             506145 21 -   3282555 T--GCATTT---TTA-T-------------TCTGTGTCCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       291934 21 -   1024465 T--GCATTT---TTA-T-------------ATTGTGTCCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       737247 21 -   3745603 T--GCATTT---TTA-T-------------ACTGTGTCCT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 921003 21 - 119751181 T--GAATAT---ATG-T-------------GCTGTGTCCT
i micMur3.chr3              C 0 I 103
s otoGar3.GL873530            6761711 19 -  36342412 T--G--TGT---GTG-T-------------GCTGTGTCCT
i otoGar3.GL873530          C 0 I 14
s mm10.chr9                  55175688 37 + 124595110 T--ATATTTCCCATA-TTGAGAGATGGCAAACTTTGCTCT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46886 20 -  40214260 T--GCAT-T---GTG-A-------------ACTCTGCTCT
i canFam3.chr30             I 42 I 1
s dasNov3.JH569975              39248 21 -   2180720 --GGCATTG---CTA-T-------------ACTGCATCTA
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       644205 693 -   2566024 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=490901.000000
s hg38.chr15_KI270850v1_alt    189042 106 +    430880 -------GGCCAGGAAGCT--------------------------------------------------------------------------------TGTCT--TTTGACCTTTGCCCGAACTGGGTACGAAAGCCCCTCCTAAAAATTCA--TTAGATTCATTTCTGAACTTGATAATT-GTAATTTGTGTTAAT
s panTro5.chr15              17998641 106 -  83230942 -------GGCCAGGAAGCT--------------------------------------------------------------------------------TGTCT--TTTGACCTTTGCCCAAACTGGGTACGAAGGCCCCTCCTAAAAATTCA--TTAGATTAATTTCTGAACTCGATAATT-GTAATTTGTGTTAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17224957 106 -  99763055 -------GGCCAGGAAGCT--------------------------------------------------------------------------------TGTCT--TTTGACCTTTGCCCAAACTGGGTACGAAGGCCCCTCCTAAAAATTCA--TTAGATTAATTTCTGAACTCGATAATT-GTAATTTGTGTTAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287645 106 +    378907 -------GGCCAGGAAGCT--------------------------------------------------------------------------------TGTCT--TTTGACCTTTGCCCGAACTGGGTACAAAGGCCCCTCCTAAAAATTCA--TTAGATTCATTTCTGAACTTGATAATT-GTAATTTGTGTTAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143194 106 + 121039945 -------GGCCAGGAAGCT--------------------------------------------------------------------------------TGTCT--TTTGACCTTTGCCCAAACTGGGTACAAAGGCCCCTCCTAAAAATTCA--TTAGATCCATTTCTGAACTTGATAATT-GTAATTTGTGTTAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60354114 106 + 169600520 -------GGCCAGGAAGCT--------------------------------------------------------------------------------TGTCT--TTTGAACTTTGACCAAACTGGGTATGAAGGCACTTCCTAAAAATTCA--TTAGGTTCATTTCTGAACTTGATAATT-GTAATTTGTGTTAAT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5350240 102 -   6271500 -------AACCA-GAAGCG--------------------------------------------------------------------------------TATCT--TTTGAACTTTG-CCAAACTGAGTATGAAGGCCCTTTCTAAAAATTCAATTCACATTCATTTCTGA---TGATAATT-GTAATTTGTGTT-AT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1809826 106 -   1987038 -------GGCCAGGAAGCT--------------------------------------------------------------------------------TGTCT--TTTGAACTTTGACCAAACTGGGTATGAAGGCACTTCCTAAAAAATCA--TTAGGTTCGTTTCTGAACTTGATAATT-GTAATTTGTGTTAAT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7469987 106 -   9444221 -------GGCCAGGAAGCT--------------------------------------------------------------------------------TATCT--TTTGAAATTTGCCTTAACTGGGTATGAAGGCCCTTCCTAAAATCCCA--TTACACTCATTTCTAAACTTGGTAATT-GTAAATTGTGTCAGC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 224379 107 -   2853901 -------GGCCAGGAAGCT--------------------------------------------------------------------------------TATCT--TTTGAACTTTGCTAGAAATGGATATGAAGGCCTTTCCTAAAACCCCA--TCAAATTAATTTCTGAACTTCATAAGTAGTAAATTGTGTAAAT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             506166 106 -   3282555 -------GGCCAGGAAGCT--------------------------------------------------------------------------------TATCT--TTTGAAC-TTGCCAGAAATGGATACGAAGATCCTTCCTAAATCCCCA--CCAAATTCATTTCTGAACTTCATAAATAGTAAATTATGTAAAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       291955 107 -   1024465 -------GGCCAGGAAGCT--------------------------------------------------------------------------------TATCT--TTTGAACTTTGCCAGAAATGGATATGAAGACCTTTCCTAAAACCCCA--TCAAATTCATTTCTGAACTTCATAAATAGTAAATTATGTAAAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       737268 107 -   3745603 -------GGCCAGGAAGCT--------------------------------------------------------------------------------TATCT--TTTGAACTTTGCCAGAAATGGATATGAAGGCCTTTCCTAAAACCCTA--TCAAATTCATTTCTGAACTTCATAAATAGTAAATTGTGTAAAT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6761744 164 -  36342412 -------GGCCCAGAAACGTGTCCTttttttttgttgttgcagtttttggctgggcctgggtttgaacccgccacttctgagccacaggcgccgcccAATGTCT--TTTGAAC-TCGCCAACACTGGATATAAAGGCTTTTCCTAAAACTCCT--TTAAATTCATTTGTTAATGAG----------------------
i otoGar3.GL873530          I 14 C 0
s mm10.chr9                  55175725  55 + 124595110 --------GGCAAGAGACT--------------------------------------------------------------------------------TCATG--TGCGACT-----------------------------GTAAAATCCCA--CGTGACTGCTGTGTGGATGAG----------------------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46907  69 -  40214260 -------GTTCAGAAAACT--------------------------------------------------------------------------------TG-----------------CCAAACTAGGTATGAAGACCCTGCCTAAAATCCCG--TCAGATTC-TTTGTGAGTGAG----------------------
i canFam3.chr30             I 1 C 0
s dasNov3.JH569975              39269  92 -   2180720 TGCCGTGACCCAGGAAACT--------------------------------------------------------------------------------TGACTTCTTTGAAATCTACCAAGACTAGATAT-AGCATCCCTCTTAAAATCTCA--T-AGGTTCATTTGTGAGTGAG----------------------
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 921024 103 - 119751181 I
e proCoq1.NW_012149419v1       644205 693 -   2566024 I
e manLeu1.NW_012105520v1       297089   1 -   1458659 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=387081.000000
s hg38.chr15_KI270850v1_alt    189148 51 +    430880 TGGTAAATTGTGTCTTGTAGAGAGATATTCGATAGTAAATTACATGTTTTT
s panTro5.chr15              17998747 51 -  83230942 TGGTAAATTGTGTCTTATAGAGAGATATTTGATAGTAAATTACATGTTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17225063 51 -  99763055 TGGTAAATTGTGTCTTATAGAGAGATATTTGATAGTAAATTACATGTTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287751 51 +    378907 TGGTAAATTGTGTCTTGTAGAGAGATATTCGATAGTAAATTACATGTTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143300 51 + 121039945 TGGTAAATTGTGTCTTGTAGAGAGATATTTGATAGTAAATTACATGTTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60354220 51 + 169600520 TGGTAAATTGTGTCTTTTAGAGAGATATTTGATAGTAAATTACAAGTTTCT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5350342 50 -   6271500 TGGATAATTATGTCTTGTAGAG-GATATTTGATAGTAAATTACATGCTTTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1809932 51 -   1987038 TGGTAAATTGTGTCTTTTAGAGAGATATTTGATAGTAAATTACAAGTTTCT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7470093 51 -   9444221 TGTTAAATTCTGTCTTGTAGAGAGGTATTTTGTAGTAAATAACATGTTTTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 224486 49 -   2853901 TGGTAAGTTGTGTATTGTAGAGAAGTATTTTGTAGTAAATAAC--GTTTTA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             506272 49 -   3282555 TGGTAAGTTGTGTATTGTAGAGAAGTATTTAGTAGTAAATAAC--GTTTTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       292062 49 -   1024465 TGGTAAGTTGTGTATTGTAGAGAAGTATTTAGTAGTAAATAAC--GTTTTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       737375 49 -   3745603 TGGTAAGTTGTGTATTATAGAGAAGTATTTTGTAGTAAATAAC--GTTTTT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 921127 51 - 119751181 TGGTAAATTATGTCTTGTAGAGAAGTATTCTGTAGTAAGTAACATGTTTTT
i micMur3.chr3              I 103 I 88
s otoGar3.GL873530            6761908 45 -  36342412 TGGTAAATTA--TCATGTAGAGAAATGTTCTATAGTAAAT----TCTTTTT
i otoGar3.GL873530          C 0 I 2
s mm10.chr9                  55175780 39 + 124595110 TAGCAAGCCCTGCCTTA-GGAGAGGTGCTTCACAGCAGAT-----------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 46976 51 -  40214260 TGGTAAATTGTACCTTGTAGAGAAGTATTCTGTGGTAGGTGACATGCTGTG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              39361 45 -   2180720 TGGTAAATTCTGTCTTGTA-AGAAATATTCTGTGGTAA----CACGTTTA-
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       644205 693 -   2566024 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=35567.000000
s hg38.chr15_KI270850v1_alt    189199 7 +    430880 AAAAAGA-
s panTro5.chr15              17998798 7 -  83230942 AAAAAGA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17225114 7 -  99763055 AAAAAGA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287802 7 +    378907 AAAAAGA-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143351 7 + 121039945 AAAAAGA-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60354271 7 + 169600520 TGAAAGA-
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5350392 7 -   6271500 AAAAAGA-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1809983 7 -   1987038 TGAAAGA-
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7470144 7 -   9444221 AAAACTG-
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 224535 7 -   2853901 AAAAATA-
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             506321 7 -   3282555 AAAAATA-
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       292111 7 -   1024465 AAAAATA-
i cebCap1.NW_016107979v1    C 0 I 17
s aotNan1.NW_018511953v1       737424 7 -   3745603 AAAAATA-
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  55175819 3 + 124595110 ----AGA-
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 47027 7 -  40214260 AAAAAGA-
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              39406 7 -   2180720 -AAAATAA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 921178 88 - 119751181 I
e proCoq1.NW_012149419v1       644205 693 -   2566024 I
e otoGar3.GL873530            6761953 2 -  36342412 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=96680.000000
s hg38.chr15_KI270850v1_alt    189206 21 +    430880 CAATTTGCTTTATAGTGAGGT
s panTro5.chr15              17998805 21 -  83230942 CAATTTGCTTTATAGTGAGGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17225121 21 -  99763055 CAATTTGCTTTATAGTGAGGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287809 21 +    378907 CAATTTGCTTTATAGTGAGGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143358 21 + 121039945 CAATTTGCTTTATAGTGAGGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60354278 21 + 169600520 AAATTTGCCTTATAGTGAGGT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5350399 21 -   6271500 AAATTTGCTTTATAGTGAGGT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1809990 21 -   1987038 AAATTTGCCTTATAGTGAAGT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7470151 21 -   9444221 AAATTTGCTTTTTAGTACGGT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 224542 20 -   2853901 -AATTTACTTCTTAGTGAGGT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             506328 16 -   3282555 -AATTCACTTCTT----AGGT
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       737431 17 -   3745603 -AATTCACTTCTTAGTGA---
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6761955 20 -  36342412 -AATTAGCTCTTTAGCAAAGC
i otoGar3.GL873530          I 2 C 0
s mm10.chr9                  55175822  8 + 124595110 ---CTGGCTCT----------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 47034 21 -  40214260 AAAATGGTTCTTTAGTGAAAT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              39413 21 -   2180720 AAACTGTTTTTTTAGTGAAGT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 921178 88 - 119751181 I
e proCoq1.NW_012149419v1       644205 693 -   2566024 I
e cebCap1.NW_016107979v1       292118 17 -   1024465 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=294890.000000
s hg38.chr15_KI270850v1_alt    189227 50 +    430880 GGTAATCAATTCATAA-CTCTTAGTTTTGGGGAGCGTCT--------------ATTGTAAGTAAC
s panTro5.chr15              17998826 49 -  83230942 GGTAATCAATTCAT-A-CTCTTAGTTTTGGGAAGTGTCT--------------ATTATAAGTAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17225142 49 -  99763055 GGTAATCAATTCAT-A-CTCTTAGTTTTGGGAAGTGTCT--------------ATTATAAGTAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287830 50 +    378907 GGTAATCAATTCATAA-CTCTTAGTTTTGGGAAGCGTCT--------------ATTGTAAGTAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143379 50 + 121039945 GGTAATCAATTCATAA-CTCTTAGTTTTGGGAAGTGTCT--------------ATTATAAGTAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60354299 50 + 169600520 GGTAATCATGTCATAA-TTCTTAGTTTTGGGAAGTGTCT--------------ATTATAAGTAAC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5350420 50 -   6271500 GGTAATCATTTCATAA-TTCTTAGTTTCGGGAAGTGTCT--------------ACTATAGGTAAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1810011 50 -   1987038 GGTAATCATGTCATAA-TTCTTAGTTTTGGGAAGTGTCT--------------ATTATAAGTAAC
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7470172 47 -   9444221 GGTAATCATTTCATAA-TTCTTAGTTTTGTGAGGTGTC-----------------TATAAATAAC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 224562 47 -   2853901 ---GATCACTTCATAA-TTCTTGGTTTTGTGAAATATCT--------------GTTATAAATAAC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             506344 47 -   3282555 ---AATCACTTCATAA-TTCTTAGTTTTGTGAAATATCT--------------ATTATAAATAAC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       292135 50 -   1024465 GGTAATCACTTCATAA-TTCTTAGTTTTGTGAAATATCT--------------ATTATAAATAAC
i cebCap1.NW_016107979v1    I 17 C 0
s aotNan1.NW_018511953v1       737448 50 -   3745603 GGTAATCACTTCATAA-TTCATAGTTTTGTGAAATATCT--------------ATTATAAATAAC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6761975 60 -  36342412 GGTGGTTATTTCAT----TTTTAGTTTTATGAAGTATTTTTATGACGTGTCTACTTATTAGAAA-
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55175830 31 + 124595110 --CAGTCACTCTCAAG-TACTTACTTC--------------------------TTTATAA-----
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 47055 49 -  40214260 GGTGATCATTTTATAATTTTTTAGTTTTGTGAAATGTCT--------------ACTTTC--TAAC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              39434 47 -   2180720 AGTGGTCATTTTGTAA--TTTTAGTTTTGTAAAGAATTT----------------TACAAATGTC
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 921178 88 - 119751181 I
e proCoq1.NW_012149419v1       644205 693 -   2566024 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=4871296.000000
s hg38.chr15_KI270850v1_alt    189277 532 +    430880 -----ACATCTGACCTCTTAAAATGTAAGGAAATTGAATTTATGTAATG-ATTCA-GGCTTTTCAAAG-------TT------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGGTAGCTGTTTTGAGGAACTGATAGTTTGGAATA-TTTATTTTAAACAAAATAAGCCTTTGATCTTATGCACATAGCCGTACA--AGTAAAATGTTTTCTTA-TTTTAAATTAGATTATGTTTTAG-A--ATTTTTTTCAGTTTTGCTTTATATTTGACTGATTGCTTTTCTTTATTCCTAAGGCATCCATTAAGTTGAATTGTTCAAAATTGTTTCATTTTTAAAAGCTGAGAACTGTTGTTTGTCAAATCAAAGTTGGATTTAAAAAT-GCATATTTTAATTTTAATAAGCTCTT----TGGTAGT-GGGACTGCAGTGACAGATGGTTGGGAGTTTGTCCCTAAAGCTGTGACACCAATCTTCTA-----------ATGTGCATATTTGTTCTGTGTAGTTC------------------------TGGCAGATTCTTTCTCTATTTCAGAATGGGACAACAGAAGAAGTGACTTCAAAAGAAGACGAAG------AGGAAGAGATGGATGAAGT
s panTro5.chr15              17998875 532 -  83230942 -----ACATCTGACCTTTTAAAATGTAAGGAAATTGAATTTATGTAATG-ATTCA-GGCTTTTCAAAG-------TT------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATGTAGCTGTTTTGAGGAATTGATAGTTTAGTGTA-TTTATTTTAAACAAAATAATCCTTTGATCTTATGCACATAGCCGTACA--AGTAAAATGTTTTCTTA-TTTTAAATTAGATTATGTTTTAA-A--ATTTTTTTCAGTTTTGCTTTATATTTGACTGATTGCTTTTCTTTATTCCTAAGGCATTCATTAAGTTGAATTGTTCAAAATTGTTTCATTTTTAAAAGCTGAGAACTGTTGTTTGTCAAATCAAAGTTGGATTTAAAAAT-GCACATTTTAACTTTAATAAGCTCTC----TGGTAGT-GGGACTGCAGTGACAGATGGTTGGGAGTTTGTCACTAAAGCTATGACACCAGTCTTCTA-----------AGGTGCATATTTGTTCTGTGTAGTTC------------------------TGGCAGATTCTTTCTCTATTTCAGAATGGGACAACAGAAGAAGTGACTTCAAaagaagaggaag------aagaagaGATGGATGAAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17225191 532 -  99763055 -----ACACCTGACCTCTTAAAATGTAAGGAAATTGAATTTATGTAATG-ATTCA-GGCTTTTCAAAG-------TT------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATGTAGCTGTTTTGAGGAATTGATAGTTTGGTGTA-TTTATTTTAAACAAAATAATCCTTTGATCTTATGCACATAGCCGTACA--AGTAAAATGTTTTCTTA-TTTTAAATTAGATTATGTTTTAA-A--ATTTTTTTCAGTTTTGCTTTATATTTGACTGATTGCTTTTCTTTATTCCTAAGGCATTCATTAAGTTGAATTGTTCAAAATTGTTTCATTTTTAAAAGCTGAGAACTGTTGTTTGTCAAATCAAAGTTGGATTTAAAAAT-GCACATTTTAACTTTAATAAGCTCTC----TGGTAGT-GGGACTGCAGTGACAGATGGTTGGGAGTTTGTCACTAAAGCTATGACACCAGTCTTCTA-----------AGGTGCATATTTGTTCTGTGTAGTTC------------------------TGGCAGATTCTTTCTCTATTTCAGAATGGGACAACAGAAGAAGTGACTTCAAaagaagaggaag------aagaagaGATGGATGAAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       287880 532 +    378907 -----ACATCTGACCTCTTAAAATGTAAGGAAATTGAATTTATGTAATG-ATTCA-GGCTTTTCAAAG-------TT------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGGTAGCTGTTTTGAGGAACTGATAGTTTGGAATA-TTTATTTTAAACAAAATAAGCCTTTGATCTTATGCACGTAGCCGTACA--AGTAAAATGTTTTCTTA-TTTTAAATTAGATTATGTTTTAG-A--ATTTTTTTCAGTTTGGCTTTATATTTGACTGATTGCTTTTCTTTATTCCTAAGGCATCCATTAAGTTGAATTGTTCAAAATTGTTTCATTTTTAAAAGCTGAGAACTGTTGTTTGTCAAATCAAAGTTGTATTTAAAAAT-GCATATTTTAATTTTAATAAGCTCTT----TGGTAGT-GGGACTGCAGTGACAGATGGTTGGGAGTTTGTCCCTAAAGCTATGACACCAATCTTCTA-----------ATGTGCATATTTGTTCTGTGTAGCCC------------------------TGGCAGATTCTTTCTCTATTTCAGAATGGGACAACAGAAGAAGTGACTTCAAaagaagacgaag------aagaagaGATGGATGAAGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143429 529 + 121039945 -----ACATCCGACCTCTTAAAATGTAAGGAAATTGAATTTATGTAATG-ATTCA-GGCTTTTCAAAG-------TT------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAGGTAGCTGTTTTGAGGAATTGATAGTTTGGAATA-TTTATTTTAAAGAAAATAAGCCTTTGATCTTATGCACGTAGCCGTACA--AGTAAAATATTTTCTTA-TTTTAAATTAGATTATGTTTTAA-A--ATGTTTTCCAGTTTTGCTTTCTATTTGACTGATTGCTTTTCTTTATTCCTAAGGCATCCATTAAGTTGAATTGTTCAAAATTGTTTCATTTTTAAAAGCTGAGAAC---TATTTGTCAAATCAAAGTTGGATTTAAAAAT-GCACATTTTAATTTTAATAAGCTCTT----TGGTAGT-GGGACTGCAGTGACAGATGGTTGGGAGTTTGTCCCTAAAGCTATGACACCAGTTTTCTA-----------ATGTGCATATTTGTTCTGTGTAGCCC------------------------TGGCAGATTCTTTCTCTATTTCAGAATGGGACAACAGAAGAAGTGACTTCAAaagaagacgaag------aagaagaGATGGATGAAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60354349 540 + 169600520 -----ACATCTGACCTATTAAAATGTAAGGCAATTGAATTTATGTGGTG-ATTCA-GGCTTTTCAAAG-------TT------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAGTAGCTATTTTAAGGAATTGATAGTTTGGGAGA-TTTATTTTAAACAAAATAAGCCTTTGATTTTATGCACATAGCCATATA--AGGAAAATGTTTCCTTA-TTTTAAATTAGATTATGTTTTAA-T--TTTTTTTTCAGTTTTGCTTTGTATTTGACTGATTGCTTTTCTTTATTCCTAAGGCACCCATTAAGTTGAATTGTTCAAAATTGTTTCATTTTTAAAAGCTGAGAACTGTTCTTTGTCAAATCAATGTTGGATTTCAAAAT-TAACATTTTAATTTTAATAAGCTCTC----TGGCAGT-GGGACTGCAGTGACAGATGGTTGAGAGTTTGTCCCTAAAGCTATGACACCAGTCTTCTAATGTACTCAGCCTGTGCATACTTGTTCTGTGTAGCCC------------------------TGGCAGATTCTTTCTCTATTTCAGAATAGGACAACAGAAGAAGTGACTTCAAAAGAAAAGG---------AAGAAGAGATGGCTGAAGT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5350470 525 -   6271500 -----GCATCTGACCTTTTAAAATGTAAGGAAATTGAATTTATGTAATG-ATTCA-GTCTTTTCAAAG-------TT------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAGGTAGCTGTTTTGAGAAATTGATAGTTTGGGACA-TTTATTTTGAACAAAGTAAGCCTTTGATCTTATGCACATAGCCATATA--AGTAAAAGGTTTCCTTA-TTTTAAATTAGATTATATTTTAA-A--GTTTTTTTCA-TTTTTCTTTATATTTGACTGATTGCTTTTCTTTATTCTGAAGGCATCCATTAAGTTAAATTGTTCAAAATCGTTTCAATTTGAAAAGCTGAGAACTGTTGTTTGTCAAATCAAAGTTGGATTTAAAAAT-GCACATTTTAATTTTAATAAGCTCTC----TGGTAGT-GGGACTGCAGTGACAGATGGTTGGGAGTTTGTCCCTAAAGCTATGACATCGGTCTTCTA-----------TTGTGCATATTTGTTCCGTGTAGCCC------------------------TGGAAGATTCTTTCTCTATTTTCGAATGGCACAAC---AGAAGTGACTTCAAAAGAAGAGG---------AAGAAGAGATGGCTGAAGT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1810061 538 -   1987038 -----ACATCTGACCTATTAAAATGTAAGGCAATTGAATTTATGTGGTG-ATTCA-GGCTTTTCAAAG-------TT------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAGTAGCTATTTTAAGGAATTGATAGTTTGGGAGA-TTTATTTTAAACAAAATAAGCCTTTGATTTTATGCACATAGCCATATA--AGTAAAATGTTTCCTTA-TTTTAAATTAGATTATGTTTTAATT--TTTTTTTTCAGTTTTGCTTTGTATTTGACTGATTGCTTTTCTTTATTCCTAAGGCACCCATTAAGTTGAATTGTTCAAAATTGTTTCATTTTTAAAAGCTGAGAACTGTTCTTTGTCAAATCAATGTTGGATTTCAAAAT-GAACATTTTAATTTTAATAAGCTCTC----TGGCAGT-AGGACTGCAGTGACAGATGGTTGAGAGTTTGTCCCTAAAGCTATGACACCAGTCTTCTAATGTACTCAGCCTGTGCATACTTGTTCTGTGTAGCCC------------------------TGGCAGATTCTTTCTCTATTTCAGAATAGGACAAC---AGAAGTGACTTCAAAAGAAAAGG---------AAGAAGAGATGGCTGAAGT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7470219 515 -   9444221 -----ACATCTGATCTTTTAAAATATAAGGCAATTGAATTTATGTAATG-ATTCA-GGCTTTTCAAAG--------T------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGGTAGCTATTTTAAGGAATGGATAGTTTGTGACA-TTTATTTTAAACAAAATAAGCCACTGATCTTATACACATAGCCATGTA--AGTAAAATGTTTTCTTA-TTTTAAATTAGATTATGTTTTAA-C--ATTTTTTTGG-TTTTGCTTTATATTTGAC----TGCTTTTCTTTATTCCTAATTCTTTTAT-------------------TTGTTCCATTTTTAAAAGCTGATGACTGTTGTTTGTCAAGTCAAAGTTGGATTTAAAAAT-AAACA-TTTAATTTTAATAAG----C----TGATAGC-AGCACTGCAGTGACAGATGGTTGAGAATTTGTCACTAAAGCTGTGGCACCAGTCTTCTAATGGACTCAGCCT----ATATTCAGCCTGTGTAGCCC------------------------TGGCAGATTCTTTCTCTATTTCAGAATGGGACAACAGAGGAAGTGACTTCAGATGAAGAGGAAGAGGAAAAAGAGGAGATGGCTGAAGT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 224609 535 -   2853901 -----CCATCTGACCTTTCAAAATGTAAGGCAATTGAATTTATGTAATG-ATTCA-GGCTTTCCAAAG-------TT------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGGTAGCTATTTTAAGGAATCGATAGTTAGGGATATTTTATTTTAGACAAAATAAGCCATT-ATCTTATGCATATTGCCATATA--AGTAAGTTGTTTTATTC-TTTTAAGTTCGATAATGTTTTAA-C-TTTTTTTTTCTGTTTTGCTTTATATTTG-----TTGCTTTTCTTTATTCCTAAGGCATCAGTTAAATTGAATTGTTCAAAATTGTTTAATTTTTTAAAGTTCATAGCTATTATTTGTT-AGTCAAAGCTGGATTTAAAGAT-AAACATTTTAATTTCAATAAA--CTC----TGGGAGT-GAAACTGTACTGACAGATAGTTGAGATTTTGTCCCTAAAGCTATGGCACCAGTGTTCTAATGTACTCAGCCTGTGCATATTTGTTCT-TGTAGCCC------------------------TG---GATTCTTTCTGTGTTTCAGAATGGGACAACAGAAGAAGTGACTTCagaagaagatgaagaag---aagaagaGATGGCTGAAGT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             506391 537 -   3282555 -----TTATCTGACCTTTCAAAATGTAAGGCAATTGAATTTATATAATG-ATTCA-GGCTCTCCAAAG-------TT------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGGTAGCTATTTTAG-----CGATAGTTAAGGATGTTTTATTTTAGACAAAATAAACCATTGATCTTACGCATATTGACATATA--AGTAAATTGTGTTTTTA-TTTTAAGTTAGATAATGTTTTAA-C--TTTTTTTTCTGTTTTGCTTTATATTTG-----TTGCTTTTCTTTATTCCTAAGGCATCAGTTAAGTTGAATTGTTCAAAGGTGTTTAATTTTTAAAAGCTGATAGCTGTTATTTGTT-AGTCAAAGCTGGATTTAAACATAAAACATTTTAATTTCAGTAAACTCTC----TGGGAGT-GAAACTGTACTGACAGATAGTTGAGAGTTTGTCCCTAAAGCTATGGCACCAGTCTTCTGATGTCCTCAGCCTGTGCATAGTTGTTCTGTGCAGCCC------------------------TGGTAGATTCTTTCTCTGTTTCAGAATGGGACAACAGAAGAAGTGACTTCAGAAGAAGATGATGAAG---AAGAAGAGATGGCTGAAGT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       292185 538 -   1024465 -----CCATCTGACCTTTCAAAATGTAAGGCAGTTGAATTTATATAATG-ATTCA-GGCTTTCCAAAG-------TT------------------------------------------------------------------------------------------------------------------------------------------------------AAAAACGTAGCTATTTTAAGGAATCGATAGTTAGGGATATTTTATTTTAGACAAAATAAGCCATTGATCTTATGCATATTGCCAT------GTAAAttatgttttttgttttaagttagataatgttttaa-cttttttttttctgttttgctttgtatttg-----ttgcttttttttattCCTAAGGCATCAGTTAAGTTGAATTGTTCAAAATTGTTTAATTTTTAAAAGCTGATAGCTGTTATTTGTT-AGTCAAAGCTGGATTTAAAGAT-AAACATTTTAATTTCAGTAAA--CCC----TGGGATT-GAAACTGTACTGACAGATAGTTGAGAGTTTGTCCCTAAAGCTACGGCACCAGTCTTCTAATGCACTCAGCCTGTGCATATTTGTTCTGTGTAGCCC------------------------TGGTAGATTCTTTCTCTGTTTCAGAATGGGACAACAGAAGAAGTGACTTCagaagaagatgaagaag---aagaagaGATGGCTGAAGT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       737498 542 -   3745603 -----CCATCTGGCCTTTCAAAATGTAAGGCAATTGAATTTATATAATG-ATTCA-GGCTTTCCAAAG-------TT------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGGTAGCTATTTTAAGGAATTGATAGTTAGGGATATTTTATTTTAGACAAAATAAGCCATTGATCTTATGCATATTGCCATATA--AGTAAATTGTGTTTTTA-TTTTAAGTTAGATAATGTTTTAA-C-TTTTTTTTCCTGTTTTGCTTTATATTTG-----TTGCTTTTCTTTATTCCTAAGGCATCAGTTAAGTTGAATTGTTCAAAATTGTTTAATTTTTAAAAGCTGATAGCTGTTATTTGTT-AGTCAAAGCTGGATTTGAAGAT-AAACATTTTAATTTCAGTAAACTCTC----TGGGAGT-GAAACTGTACTGACAGATAGTTGAGAGTTTGTCCCTAAAGCTATGGCACCAGTCTTCTAATGTACTCAGCCTGTGCATATTTGTTCTGTGTAGCCC------------------------TGGTAGATTCTTTCTCTGTTTCAGAATGGGACAACAGAAGAAGCGACTTCagaagaagatgaagaag---aagaagaGATGGCTGAAGT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 921266 554 - 119751181 -----ACATCTGACCTTTTAAAATGTAGGGCAGTTGAATTTATGTGAAGAATACA-GGCCTTTCAAAG-------TA------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGGTAGCAATTTTAAGGAATCAATAGGTTGGGATA-TTTATTTTAAATAAAATAAGCCATTGACCTTAGATATAGAGCCATATAATAGTAAAATGTTTTATTA-TTTTAAATTAGATTATGTTTTAA-A--ATTTT---TAGTTTTGCTTTACATTTGCCTGATTGCCTTTGTGTATTCCTCAGGCATCTATTAAGTTGAATTGTTCACATTTGTTTCTTTTTTAAAAGCTGGTAGATTTTATTTGTC-----AAAGTTAGATGTAAAAAT-AATTGTTTTAATTTTAATAAGCT--------GTTAGT-GGAATTGCAGTGACAGATAAAT---AGTTTGTCTCTAAAGCTGTGGCACCAGTCTTATGATGTACGCAGCCTGTTCATATTT-TTCTGTGTAGCCCTGGCTAATTCTTTCTCTGTAGCCTTGGCAAATTCTTTCTCTGTTTCAGAATGGGACAACGGAAGAAGTGACTTCagaagaagaagaag------aggaagaGATGGCTGAAGT
i micMur3.chr3              I 88 C 0
s proCoq1.NW_012149419v1       644898 518 -   2566024 -----ACATCTGATCTTTTAAAATGTAAGGCAGTTGAATTTATGTAAAGAATATA-GGCTTTTCAAAG-------TC------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGGTAGCTATTTTAAGGAATCAATAGGTTGGGATA-TTTATTTTAAACAAAATAAGTCATTGACCTTGGATATAGAGCCATATAATAGTAAAATGTTTTCTTA-TTTTAAATTAGATCATGTTTTAA-A--ATTTT---CAGT-----------TTTGCCTGATTGCCTTTATTCATTCCTCAGGCATCTATTAAGTTGAATTGTTCACAATTGTTTCTTTTTTAAAAGCCGGTAGATTTTATTTGTC-----AAAGATAGATGTAAAAAT-AATTGTTTTAATTTTAATAAGCT--------GTTAGT-GGAACTGCAGTGACAGATAAAT---AGTT--TCTCTAAAGCTGTGGCACCAGCCTTCTAATGTGTGCAGCCTGTTCATGTTTGTTCTGTGCAGCCC------------------------TGGCACGTGCTTTCTCTATTTCAGAACGGGATAACGGAAGAAGTGACTTCAGAAGAAGAGGAGG------AGGAAGAGATGGCTGAAGT
i proCoq1.NW_012149419v1    I 693 C 0
s otoGar3.GL873530            6762035 501 -  36342412 -----GCATCTGACCTTCTAAAATGTAAGGCAGTTGAAGTTACATAAAGTATA----GGTTTTAAGAG-------TT------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGGTAGCTATTTTAAGGAATCAGTAGATT----TG-TTTATTTTAAACAAAATAAGCCGTTGACCTTATATGTATAGCCATATA--AGTAAGATGCTTTATT---------TTAGATTATGTTAAAA-A--ATTTT---CAGTTTTGCTTTACATATGCCTCATTGCCCTTATTTGTTCCTAAGGCATTTATTAAGTTGAATTGTTCAAAATTGTTTTTTATTT-AAAGCTGAT--------CTTTTC-----CAAGCTGGatttaaaaat-a----ttttaattttaataaGCTTTC----CGTTGGTAGAAACTGCAGTGACAGATAGGT---TGTA--TCT---AAACTGTGGTACCAGTCTCCTAATGTACTCAGCCTATTCATATTGGTTCTGTGTAGCCC------------------------TGACAATTTTTTTCTCTGTTTCAGAATGGAACAACGGAAGAAGTGACTTCAGAAGATGAAGAAG------AGGAAGAGATGACTGAAGT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55175861 388 + 124595110 ------CATCTCACCATTTAAAATGCAAGGCAGATGAATTTATAGAAAA-ATCAATGGTTTTTTGGAGGGGGGTGTT------------------------------------------------------------------------------------------------------------------------------------------------------AATTGGGTAGA-----TAAGGAAAGAATAATTTGGATCA-TTTATTAGAGTAGAA---------------------------CATATA--AGTAAAAA--------A-ATTAAAATTAGGTTATCTTT----A--GTTTT---TAAATTTCTTTTATATTTGA--------TTCCCTTTGTTCTTAAGGCATCTGCTACATTGGATTG---------------------------------------------------------ACTTGAAATT-A-----------TTTAATAAG--CTC----TGCTCAT-GGGACTGTAGTGACAG-TGACTAATAGTG------------------GCCAGCTTTCC-------------------TATGTGCTCTGTATAGCGT------------------------TGGCACAGTCTTTCTCTGTTTCAGAATGGGACAACTGAAGAAGTAACTTCAGAAGAAGAGGAAG------AGGAGGAGATGGCTGAAGT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 47104 521 -  40214260 -----ACGTTTTACCTTTTATAATGTAAGGCAGTGGAATTTATGGAAAG-AATCA-AGCCTTCCAAAG-------TT------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAGGTAGCTATTTTAAGGAATACATGGTTTGGGATA-TTTATTTCAAGTGAAAGAAGCTGTTGACCTTATATACATAGCCCTATA--CGTGAAATGTTTCCTTA-TTTTGAATTAGG--ATGTTCTAA-A--TTTTTTTCCAGTTCTGCTTTATATTGGACTATTTGCCATTGT-TATTCTCAAGGTATCTATTAAGTTGAATTGGTCAAAATTGTTTCATTTTCAAAAGCTGATAGATATTACTTGTCACATCAAAGCTGGATTTAAAAGT-AAATA-TTCAACTTTAGTAAA--TTC----TGTTAGT-GGAACTGTAGCGATAGAAGATTGATAGTTTGTCCCTAA------------AGTCTTCTAATGTACTCAGTATGTGC----TTATTCTGTGTGGCCC------------------------TAGCAGATTCTTTTTCCTTTTCAGAATGGGACCACAGAAGAAGTGACTTCAGAAGAAGAGGAAG------ATGAGGAGATGGCTGAAGT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              39481 674 -   2180720 TGTTCCTTTACAACATGTTATAATATAAGACAGTTGAATTTATGGATGG-ATTCA-GGCTTTTCAAAG-------TTAAAAAGGAAGCtatttttttttcattaaaaattttttttattGGAGTATATCATTCATACATGGACATACATAAACAATAAGTGTGTAGTAAAAGTTGTGAACTTATAAAACAAAAATTCATTATCATCATATATCACTCCACCACCAACAAAAAGGTAGCTATTTTAACTAATATCTGGTTTGGAATA-TTTATATTAAAGTAAAGAAGCCACTGCTCTTATG----------TATA-----AACTTGTTTTCTTA-TTTTAAATTAGT-----TTTTAA-A--CATAATTTCAGTTTCGCTTTATAATCGAGTGATTACC-CTGTTTATTACTAAGATACCTATTAAGTTGAATTGTTCAAAATTGTTTCTTTTTAGAAAGCTGATAAATATTATTTGTCAAATCAAAGCTGGATTTAGCAAT-AAATACTT----TTTCATAAGCTCTCCATTTCTTAGT-GGGACTGCAGTGACAGATGACTG--AGTCTGTCCCTAACACTGTAGCACCAGTCTTCTAATGCAGTCACCATTTGCATATTTTTC---TCTAGCTC------------------------TGGCAAATTCTTTTTCCATTTCAGAATGGGACAACAGAAGAAGTAACTTCTGAAGAGGAGGAGG------AAGAAGAGATGGCTGAAGT
i dasNov3.JH569975          C 0 I 31
e manLeu1.NW_012105520v1       297089   1 -   1458659 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=231323.000000
s hg38.chr15_KI270850v1_alt    189809 19 +    430880 GGGTATTTTATA-TAAGAAT
s panTro5.chr15              17999407 19 -  83230942 GGGTATTTTATA-TAAGAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17225723 19 -  99763055 GGGTATTTTATA-TAAGAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288412 19 +    378907 GGGTATTTTATA-TAAGAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143958 19 + 121039945 GGGTATTTTATA-TAAGAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60354889 19 + 169600520 AGGTATTTTATA-TAAGAAT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5350995 19 -   6271500 AGGTATATTATA-TAAGAAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1810599 19 -   1987038 AGGTATTTTATA-TAAGAAT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7470734 19 -   9444221 AGGTATTTTATA-TAAGAAT
i colAng1.NW_012112253v1    C 0 I 28
s calJac3.chrY                 225144 19 -   2853901 AGGTATTTTATA-TAAGAAT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             506928 19 -   3282555 AGGTATTTTATA-TAAGAAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       292723 19 -   1024465 AGGTATTTTATA-TAAGAAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       738040 19 -   3745603 AGGTATTTTATA-TAAGAAT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 921820 19 - 119751181 AGGTATTTTATG-TAAGAAT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       645416 19 -   2566024 AGGTATTTTATG-TAAGAAT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6762536 20 -  36342412 AGGTATTTTATGTTAAGAAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55176249 18 + 124595110 AGGTAT-TTATG-TAAGAAT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 47625 19 -  40214260 AGGTATTTTATG-TGAGAAT
i canFam3.chr30             C 0 C 0
e dasNov3.JH569975              40155 31 -   2180720 I
e manLeu1.NW_012105520v1       297089  1 -   1458659 I
e chlSab2.chr29              21063692  1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=153.000000
s hg38.chr15_KI270850v1_alt    189828 1 +    430880 -A
s panTro5.chr15              17999426 1 -  83230942 -A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17225742 1 -  99763055 -A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288431 1 +    378907 -A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143977 1 + 121039945 -A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60354908 1 + 169600520 -G
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351014 1 -   6271500 -A
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1810618 1 -   1987038 -G
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 225163 1 -   2853901 -A
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             506947 1 -   3282555 -A
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       292742 1 -   1024465 -A
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       738059 1 -   3745603 -A
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 921839 1 - 119751181 -A
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       645435 1 -   2566024 -A
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6762556 1 -  36342412 -A
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55176267 1 + 124595110 -A
i mm10.chr9                 C 0 I 248
s canFam3.chr30                 47644 1 -  40214260 C-
i canFam3.chr30             C 0 C 0
e dasNov3.JH569975              40155 31 -   2180720 I
e colAng1.NW_012112253v1      7470753 28 -   9444221 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=10920.000000
s hg38.chr15_KI270850v1_alt    189829 1 +    430880 A
s panTro5.chr15              17999427 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17225743 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288432 1 +    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143978 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60354909 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351015 1 -   6271500 A
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1810619 1 -   1987038 A
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 225164 1 -   2853901 A
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             506948 1 -   3282555 A
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       292743 1 -   1024465 A
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       738060 1 -   3745603 A
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 921840 1 - 119751181 A
i micMur3.chr3              C 0 I 8
s proCoq1.NW_012149419v1       645436 1 -   2566024 A
i proCoq1.NW_012149419v1    C 0 I 43
s otoGar3.GL873530            6762557 1 -  36342412 A
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 47645 1 -  40214260 A
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55176268 248 + 124595110 I
e dasNov3.JH569975              40155 31 -   2180720 I
e colAng1.NW_012112253v1      7470753 28 -   9444221 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=10218.000000
s hg38.chr15_KI270850v1_alt    189830 2 +    430880 -CA
s panTro5.chr15              17999428 2 -  83230942 -CA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17225744 2 -  99763055 -CA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288433 2 +    378907 -CA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143979 2 + 121039945 -CA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60354910 2 + 169600520 -CA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351016 2 -   6271500 -CA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1810620 2 -   1987038 -CA
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chrY                 225165 2 -   2853901 -CA
i calJac3.chrY              C 0 I 6
s saiBol1.JH378276             506949 2 -   3282555 -CA
i saiBol1.JH378276          C 0 I 7
s cebCap1.NW_016107979v1       292744 2 -   1024465 -CA
i cebCap1.NW_016107979v1    C 0 I 58
s aotNan1.NW_018511953v1       738061 2 -   3745603 -CA
i aotNan1.NW_018511953v1    C 0 I 6
s otoGar3.GL873530            6762558 2 -  36342412 -CA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 47646 2 -  40214260 CC-
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 921841 8 - 119751181 I
e proCoq1.NW_012149419v1       645437 43 -   2566024 I
e mm10.chr9                  55176268 248 + 124595110 I
e dasNov3.JH569975              40155 31 -   2180720 I
e colAng1.NW_012112253v1      7470753 28 -   9444221 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=8190.000000
s hg38.chr15_KI270850v1_alt    189832 2 +    430880 TT
s panTro5.chr15              17999430 2 -  83230942 TT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17225746 2 -  99763055 TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288435 2 +    378907 TT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143981 2 + 121039945 TT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60354912 2 + 169600520 TT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351018 2 -   6271500 TT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1810622 2 -   1987038 TT
i cerAty1.NW_012002657v1    C 0 C 0
s otoGar3.GL873530            6762560 2 -  36342412 TT
i otoGar3.GL873530          C 0 I 4
s canFam3.chr30                 47648 2 -  40214260 TT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 921841 8 - 119751181 I
e proCoq1.NW_012149419v1       645437 43 -   2566024 I
e aotNan1.NW_018511953v1       738063 6 -   3745603 I
e mm10.chr9                  55176268 248 + 124595110 I
e calJac3.chrY                 225167 6 -   2853901 I
e dasNov3.JH569975              40155 31 -   2180720 I
e cebCap1.NW_016107979v1       292746 58 -   1024465 I
e colAng1.NW_012112253v1      7470753 28 -   9444221 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e saiBol1.JH378276             506951 7 -   3282555 I

a score=10258.000000
s hg38.chr15_KI270850v1_alt    189834 8 +    430880 ATggccag
s panTro5.chr15              17999432 8 -  83230942 TTggccag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17225748 8 -  99763055 TTggccag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288437 8 +    378907 ATggccag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143983 8 + 121039945 TTggccag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60354914 8 + 169600520 TCggctgg
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351020 8 -   6271500 TTggccag
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1810624 8 -   1987038 TTggctgg
i cerAty1.NW_012002657v1    C 0 C 0
s canFam3.chr30                 47650 6 -  40214260 -TTATAA-
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 921841 8 - 119751181 I
e proCoq1.NW_012149419v1       645437 43 -   2566024 I
e aotNan1.NW_018511953v1       738063 6 -   3745603 I
e mm10.chr9                  55176268 248 + 124595110 I
e calJac3.chrY                 225167 6 -   2853901 I
e dasNov3.JH569975              40155 31 -   2180720 I
e cebCap1.NW_016107979v1       292746 58 -   1024465 I
e otoGar3.GL873530            6762562 4 -  36342412 I
e colAng1.NW_012112253v1      7470753 28 -   9444221 I
e manLeu1.NW_012105520v1       297089 1 -   1458659 I
e chlSab2.chr29              21063692 1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e saiBol1.JH378276             506951 7 -   3282555 I

a score=433814.000000
s hg38.chr15_KI270850v1_alt    189842 191 +    430880 gcgaggtgactcatgcctgtaaccccagcactatgggaggccatggtgggtggatcacctgaggacaggagtttgagaccagcctggccaacatggcgaaactctgtctctatta---aaagtacaaaaattagccgggcatggtggtaggcacatgtaatctcagctactccggaggctgaggcaggagaatt
s panTro5.chr15              17999440 191 -  83230942 gtgaggtgactcatgcctgtaaccccagcactatgggaggccatggcgggtggatcacctgaggacaggagtttgagaccagcctggccaacatggcgaaactctgtctctacta---aaagtacaaaaattagccgggcgtggtggtaggcacatgtaatctcagctactcaggaggctgaggcaggagaatt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17225756 191 -  99763055 gtgaggtgactcatgcctgtaaccccagcactatgggaggccatggcgggtggatcacctgaggacaggagtttgagaccagcctggccaacatggcgaaactctgtctctacta---aaagtacaaaaattagccgggcgtggtggtaggcacatgtaatctcagctactcaggaggctgaggcaggagaatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288445 191 +    378907 gcgaggtgacttatgcctgtaaccccagcactatgggaggccgtggtgggtggatcgcctgaggacaggagtttgagaccagcctggccaacatggggaaactctgtctctatta---aaagtacaaaaattagctgggcatggtggtgggcacatgtaatctcagctactccggaggctgaggcaggagaatt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102143991 194 + 121039945 gcgaggtgactcatgcctgtaactccagcactatgggaggccatggtgggtggatcacctgaggacaggagtttgagaccagcctggccaacatggcgaaactctgtctctactaagtaaagtacaaaaattagctgggcatggtggtgagcacatgtaatctcagcaactcaggaggctgaggcaggagaatt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60354922 191 + 169600520 gcgaggtggctcatgcctgtaatcccagcactttgggaggccaaggcggatggcttacctgaaatcaggagttcgagaccagcctggccaacgtggtgaaactctgtctctacca---aaagcacaaaaatgagccaggcatggtagtgggcacctgtaatcccagctactcgggagactgaggcaggagaatc
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351028 191 -   6271500 gccaggtggctcatgcctgtaaccccagcactatgggaggccaaggggggcagatcagctgaggtcaggggtttgagaccagcctggccaaagtgacaaaactctgtctctacta---aaagtataaaaattagccgggcctggtggtgggcacctgtaatctcagcaactcaggaggctgaggcaggagaatg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1810632 191 -   1987038 gcgaggtggctcacgcctgtaatcccagcactttgggaggccaaggcggatggctcacctgaagtcaggagtttgagaccagcctggccaacgtggtgaaactctgtctctacca---aaagcacaaaaatgagccaggcatggtggtgggcacctgtaatcccagctactcgggagactgaggcaggagaatt
i cerAty1.NW_012002657v1    C 0 C 0
e micMur3.chr3                 921841   8 - 119751181 I
e proCoq1.NW_012149419v1       645437  43 -   2566024 I
e aotNan1.NW_018511953v1       738063   6 -   3745603 I
e mm10.chr9                  55176268 248 + 124595110 I
e calJac3.chrY                 225167   6 -   2853901 I
e dasNov3.JH569975              40155  31 -   2180720 I
e canFam3.chr30                 47656   0 -  40214260 C
e cebCap1.NW_016107979v1       292746  58 -   1024465 I
e otoGar3.GL873530            6762562   4 -  36342412 I
e colAng1.NW_012112253v1      7470753  28 -   9444221 I
e manLeu1.NW_012105520v1       297089   1 -   1458659 I
e chlSab2.chr29              21063692   1 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e saiBol1.JH378276             506951   7 -   3282555 I

a score=249823.000000
s hg38.chr15_KI270850v1_alt    190033 69 +    430880 gcttgaatccaggaggtggaggttgcagtgagccaagatcgtgccactgcactcctgcctgagtgacga
s panTro5.chr15              17999631 69 -  83230942 gcttgaatccgggaggtggaggttgcagtgagccaaggtcgtgccactgcactcctgcctgagtgacga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17225947 69 -  99763055 gcttgaatccgggaggtggaggttgcagtgagccaaggtcgtgccactgcactcctgcctgagtgacga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288636 69 +    378907 gcttgaatccaggaggtggaggttgcagtgagtaaagatcgtgccactgcactcctgcctgagtgacga
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144185 69 + 121039945 gcttgaatccgggaggtggaggttgcagtgagccaaggtcgtgccactgcactcctgcctgagtgacaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355113 69 + 169600520 gcttgaacttgggaggcggaggttgcagtgagcaaagatcgtgccactgcactccagtctgggtgacaa
i rheMac8.chr7              C 0 I 2
s macNem1.NW_012011056v1      5351219 69 -   6271500 gcttgaaccagggatggggaggttgcattaagccaagatcgtgccactgcacttctgtctgggtgacaa
i macNem1.NW_012011056v1    C 0 I 2
s cerAty1.NW_012002657v1      1810823 69 -   1987038 gcttgaacctgggaggcggaggttgcagtgagcaaagatcgtgccactgcattccagtctgggtgacaa
i cerAty1.NW_012002657v1    C 0 I 2
s chlSab2.chr29              21063693 69 -  24206276 gcttgaacccgggaggtggaggttgcagtgagccaagagtgtgccactgcactccagtctgggtgacaa
i chlSab2.chr29             I 1 I 10
s manLeu1.NW_012105520v1       297090 69 -   1458659 gcttgaacccgggaggtggaggttgcagtgagccaagagtgtgccactgcactccagtctgggtgacaa
i manLeu1.NW_012105520v1    I 1 I 2
e micMur3.chr3                 921841  8 - 119751181 I
e proCoq1.NW_012149419v1       645437 43 -   2566024 I
e aotNan1.NW_018511953v1       738063  6 -   3745603 I
e mm10.chr9                  55176268 248 + 124595110 I
e calJac3.chrY                 225167  6 -   2853901 I
e dasNov3.JH569975              40155 31 -   2180720 I
e canFam3.chr30                 47656  0 -  40214260 C
e cebCap1.NW_016107979v1       292746 58 -   1024465 I
e otoGar3.GL873530            6762562  4 -  36342412 I
e colAng1.NW_012112253v1      7470753 28 -   9444221 I
e macFas5.chr7              107345402 100 - 171882078 I
e saiBol1.JH378276             506951  7 -   3282555 I

a score=19767.000000
s hg38.chr15_KI270850v1_alt    190102 11 +    430880 gcaagactctt
s panTro5.chr15              17999700 10 -  83230942 gcaagactc-t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226016 10 -  99763055 gcaagactc-t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288705 11 +    378907 gcaagactctt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144254 10 + 121039945 gcaagactc-t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355184 10 + 169600520 gagagactc-t
i rheMac8.chr7              I 2 C 0
s macNem1.NW_012011056v1      5351290 10 -   6271500 gcaacactc-t
i macNem1.NW_012011056v1    I 2 C 0
s cerAty1.NW_012002657v1      1810894 10 -   1987038 gagagactc-t
i cerAty1.NW_012002657v1    I 2 C 0
s manLeu1.NW_012105520v1       297161 10 -   1458659 gtgaaactc-t
i manLeu1.NW_012105520v1    I 2 C 0
e micMur3.chr3                 921841  8 - 119751181 I
e proCoq1.NW_012149419v1       645437 43 -   2566024 I
e aotNan1.NW_018511953v1       738063  6 -   3745603 I
e mm10.chr9                  55176268 248 + 124595110 I
e calJac3.chrY                 225167  6 -   2853901 I
e dasNov3.JH569975              40155 31 -   2180720 I
e canFam3.chr30                 47656  0 -  40214260 C
e cebCap1.NW_016107979v1       292746 58 -   1024465 I
e otoGar3.GL873530            6762562  4 -  36342412 I
e colAng1.NW_012112253v1      7470753 28 -   9444221 I
e chlSab2.chr29              21063762 10 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e saiBol1.JH378276             506951  7 -   3282555 I

a score=23554.000000
s hg38.chr15_KI270850v1_alt    190113 27 +    430880 gtctcaaaaaaaaaaccaaaaaaa-------------------aTC
s panTro5.chr15              17999710 46 -  83230942 gtctcaaaaaaaaaaaaaaaaaaatatatatatatatatatatatc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226026 42 -  99763055 gtctcaaaaaaaaaaaaaaaaaaT----tatatatatatatatatc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288716 28 +    378907 gtctcaaaaaaaaaaaacaaaaaa------------------aaTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144264 24 + 121039945 gtctcaaaaaaaaaaaaaaaaaaC----------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355194 15 + 169600520 gtctt------------aaaataa-------------------aTT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351300 20 -   6271500 gtctc-------ataaaagaaaaa-------------------aTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1810904 20 -   1987038 gtctt-------aaaataaaataa-------------------aTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21063772 24 -  24206276 gtctc---aaaaaaaaaaaaaaaa-------------------aTC
i chlSab2.chr29             I 10 C 0
s manLeu1.NW_012105520v1       297171 20 -   1458659 gtctc-------aaaaaaaataaa-------------------aTC
i manLeu1.NW_012105520v1    C 0 C 0
e micMur3.chr3                 921841  8 - 119751181 I
e proCoq1.NW_012149419v1       645437 43 -   2566024 I
e aotNan1.NW_018511953v1       738063  6 -   3745603 I
e mm10.chr9                  55176268 248 + 124595110 I
e calJac3.chrY                 225167  6 -   2853901 I
e dasNov3.JH569975              40155 31 -   2180720 I
e canFam3.chr30                 47656  0 -  40214260 C
e cebCap1.NW_016107979v1       292746 58 -   1024465 I
e otoGar3.GL873530            6762562  4 -  36342412 I
e colAng1.NW_012112253v1      7470753 28 -   9444221 I
e macFas5.chr7              107345402 100 - 171882078 I
e saiBol1.JH378276             506951  7 -   3282555 I

a score=10010.000000
s hg38.chr15_KI270850v1_alt    190140 2 +    430880 AT
s panTro5.chr15              17999756 2 -  83230942 at
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226068 2 -  99763055 at
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288744 2 +    378907 AT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144288 2 + 121039945 AT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355209 2 + 169600520 AT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351320 2 -   6271500 AT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1810924 2 -   1987038 AT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21063796 2 -  24206276 AT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297191 2 -   1458659 AT
i manLeu1.NW_012105520v1    C 0 C 0
s canFam3.chr30                 47656 2 -  40214260 AT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 921841 8 - 119751181 I
e proCoq1.NW_012149419v1       645437 43 -   2566024 I
e aotNan1.NW_018511953v1       738063 6 -   3745603 I
e mm10.chr9                  55176268 248 + 124595110 I
e calJac3.chrY                 225167 6 -   2853901 I
e dasNov3.JH569975              40155 31 -   2180720 I
e cebCap1.NW_016107979v1       292746 58 -   1024465 I
e otoGar3.GL873530            6762562 4 -  36342412 I
e colAng1.NW_012112253v1      7470753 28 -   9444221 I
e macFas5.chr7              107345402 100 - 171882078 I
e saiBol1.JH378276             506951 7 -   3282555 I

a score=91.000000
s hg38.chr15_KI270850v1_alt    190142 1 +    430880 A
s canFam3.chr30                 47658 1 -  40214260 A
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 921841 8 - 119751181 I
e proCoq1.NW_012149419v1       645437 43 -   2566024 I
e aotNan1.NW_018511953v1       738063 6 -   3745603 I
e mm10.chr9                  55176268 248 + 124595110 I
e calJac3.chrY                 225167 6 -   2853901 I
e dasNov3.JH569975              40155 31 -   2180720 I
e cebCap1.NW_016107979v1       292746 58 -   1024465 I
e otoGar3.GL873530            6762562 4 -  36342412 I
e panPan2.chr15              17226070 0 -  99763055 C
e colAng1.NW_012112253v1      7470753 28 -   9444221 I
e manLeu1.NW_012105520v1       297193 0 -   1458659 C
e chlSab2.chr29              21063798 0 -  24206276 C
e cerAty1.NW_012002657v1      1810926 0 -   1987038 C
e macNem1.NW_012011056v1      5351322 0 -   6271500 C
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac8.chr7               60355211 0 + 169600520 C
e nomLeu3.chr6              102144290 0 + 121039945 C
e saiBol1.JH378276             506951 7 -   3282555 I
e gorGor5.CYUI01015946v1       288746 0 +    378907 C
e panTro5.chr15              17999758 0 -  83230942 C

a score=-508.000000
s hg38.chr15_KI270850v1_alt    190143 1 +    430880 -A
s panTro5.chr15              17999758 1 -  83230942 -a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226070 1 -  99763055 -a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288746 1 +    378907 -A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144290 1 + 121039945 -A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355211 1 + 169600520 -A
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351322 1 -   6271500 -G
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1810926 1 -   1987038 -A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21063798 1 -  24206276 -A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297193 1 -   1458659 -A
i manLeu1.NW_012105520v1    C 0 C 0
s calJac3.chrY                 225173 1 -   2853901 -A
i calJac3.chrY              I 6 C 0
s aotNan1.NW_018511953v1       738069 1 -   3745603 -A
i aotNan1.NW_018511953v1    I 6 C 0
s micMur3.chr3                 921849 1 - 119751181 -A
i micMur3.chr3              I 8 C 0
s otoGar3.GL873530            6762566 1 -  36342412 -A
i otoGar3.GL873530          I 4 C 0
s mm10.chr9                  55176516 1 + 124595110 -G
i mm10.chr9                 I 248 C 0
s canFam3.chr30                 47659 1 -  40214260 C-
i canFam3.chr30             C 0 C 0
e proCoq1.NW_012149419v1       645437 43 -   2566024 I
e dasNov3.JH569975              40155 31 -   2180720 I
e cebCap1.NW_016107979v1       292746 58 -   1024465 I
e colAng1.NW_012112253v1      7470753 28 -   9444221 I
e macFas5.chr7              107345402 100 - 171882078 I
e saiBol1.JH378276             506951 7 -   3282555 I

a score=8952.000000
s hg38.chr15_KI270850v1_alt    190144 1 +    430880 A
s panTro5.chr15              17999759 1 -  83230942 a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226071 1 -  99763055 a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288747 1 +    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144291 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355212 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351323 1 -   6271500 A
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1810927 1 -   1987038 A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21063799 1 -  24206276 A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297194 1 -   1458659 A
i manLeu1.NW_012105520v1    C 0 C 0
s calJac3.chrY                 225174 1 -   2853901 A
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             506958 1 -   3282555 A
i saiBol1.JH378276          I 7 C 0
s aotNan1.NW_018511953v1       738070 1 -   3745603 A
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 921850 1 - 119751181 A
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6762567 1 -  36342412 A
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55176517 1 + 124595110 A
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 47660 1 -  40214260 T
i canFam3.chr30             C 0 C 0
e proCoq1.NW_012149419v1       645437 43 -   2566024 I
e dasNov3.JH569975              40155 31 -   2180720 I
e cebCap1.NW_016107979v1       292746 58 -   1024465 I
e colAng1.NW_012112253v1      7470753 28 -   9444221 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=194032.000000
s hg38.chr15_KI270850v1_alt    190145 19 +    430880 ATATCTTCAGTTTTGGACA
s panTro5.chr15              17999760 19 -  83230942 atatCTTTTGTTTTGGACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226072 19 -  99763055 atatCTTTTGTTTTGGACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288748 19 +    378907 ATATCTTCAGTTTTGGACA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144292 19 + 121039945 ATATCTTCAGTTTTGGACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355213 19 + 169600520 ATATCTTCATTTTTGAACA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351324 19 -   6271500 ATATCTTCAGTTTTGATCA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1810928 19 -   1987038 ATATCTTCATTTTTGAACA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21063800 19 -  24206276 ATATCTTCAGTTTCGAACA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297195 19 -   1458659 ATATCTTCAGTTTCGAACA
i manLeu1.NW_012105520v1    C 0 C 0
s calJac3.chrY                 225175 19 -   2853901 ATCTCTTCATTTTTGGACA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             506959 19 -   3282555 ATCTCTCCATTTTTGGACA
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       738071 19 -   3745603 ATCTCTTCATTTTTGGACA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 921851 19 - 119751181 ATATCTTCATTTTTGAACA
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6762568 19 -  36342412 ATATCTTCATTTTTGAACA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55176518 19 + 124595110 ATACCTTAATATTTGATCA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 47661 19 -  40214260 GTATCTTCATTTTTGAATA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              40186 19 -   2180720 ACATCTTCATTTTTGAGCA
i dasNov3.JH569975          I 31 C 0
e proCoq1.NW_012149419v1       645437 43 -   2566024 I
e cebCap1.NW_016107979v1       292746 58 -   1024465 I
e colAng1.NW_012112253v1      7470753 28 -   9444221 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=243097.000000
s hg38.chr15_KI270850v1_alt    190164 32 +    430880 TTTGAGTA--ATTCTCT-AATC-TCCTTT-ATAAATA
s panTro5.chr15              17999779 32 -  83230942 TTTGAGTA--ATTCTCT-AATC-TCCTTC-ATAAATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226091 32 -  99763055 TTTGAGTA--ATTCTCT-AATC-TCCTTC-ATAAATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288767 32 +    378907 TTTGAGTA--ATTCTCT-AATC-TCCTTT-ATAAATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144311 32 + 121039945 TTTGAGTA--ATTCTCT-AATC-TCCTTT-ATAAATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355232 32 + 169600520 TTTGAGTA--ATTCTCT-TATC-TCCTTT-ATAAACT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351343 32 -   6271500 TTTGAGTA--ATTCTCT-AATC-TCCCTT-ATAAATA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1810947 32 -   1987038 TTTGAGTA--ATTCTCT-TATC-TCCTTT-ATAAACT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21063819 32 -  24206276 TTTGAGTA--ATTCTCT-AATC-TCCTTT-GTAAGTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297214 32 -   1458659 TTTGAGTA--ATTCTCT-AATC-TCCTTT-ATAAGTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7470781 33 -   9444221 TTTGAGTA--ATTCTCTAAATT-TCCTTT-GTAAACT
i colAng1.NW_012112253v1    I 28 C 0
s calJac3.chrY                 225194 28 -   2853901 C--GAGTA--ATTTTCT-AATCTTTTTTT-ATAG---
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             506978 32 -   3282555 CTTGAGTA--ATTTTCT-AATC-TTTTTT-ATAGACT
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       738090 33 -   3745603 CTTGAGTA--ATTTTCT-AATCTTTTTTT-GTAGACT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 921870 14 - 119751181 TCTTAGTA--ATTCTC---------------------
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6762587 33 -  36342412 TGTTAGTATTATTCTCT--ATC-TGCTTT-ATAAACC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55176537 32 + 124595110 TTTTAGTA--ATCCTTT-AATC-TTCTTT-TTGAAGT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 47680 32 -  40214260 TTTTAGTA--ATACTCT-AATC-TCCTTT-ATAAACC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              40205 33 -   2180720 TATAGTTA--ATTCTCT-AATC-TCCTTTGATAAATC
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       645437 43 -   2566024 I
e cebCap1.NW_016107979v1       292746 58 -   1024465 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=51429.000000
s hg38.chr15_KI270850v1_alt    190196 5 +    430880 ACTAT
s panTro5.chr15              17999811 5 -  83230942 ACTAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226123 5 -  99763055 ACTAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288799 5 +    378907 ACTAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144343 5 + 121039945 ACTAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355264 5 + 169600520 ACTAC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351375 5 -   6271500 ACTAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1810979 5 -   1987038 ACTAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21063851 5 -  24206276 ACTAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297246 5 -   1458659 ACTAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7470814 5 -   9444221 ACTAT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 225222 5 -   2853901 ACTAT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507010 5 -   3282555 ACTAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       292804 5 -   1024465 ACTAT
i cebCap1.NW_016107979v1    I 58 C 0
s aotNan1.NW_018511953v1       738123 5 -   3745603 ACTAT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6762620 3 -  36342412 --TGT
i otoGar3.GL873530          C 0 I 2
s mm10.chr9                  55176569 5 + 124595110 AATAT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 47712 5 -  40214260 AGTGT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              40238 5 -   2180720 ATTGT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 921884 0 - 119751181 C
e proCoq1.NW_012149419v1       645437 43 -   2566024 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=720239.000000
s hg38.chr15_KI270850v1_alt    190201 56 +    430880 TAATATGGAATAATTGAAAGCACGTCGTATTTGGAATGGA--ATGTAATTTATAAATT
s panTro5.chr15              17999816 56 -  83230942 TAATATGGAATAATTGAAAGCACATCGTATTTGGAATGGA--ATGTAATTTATAAATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226128 56 -  99763055 TAATATGGAATAATTGAAAGCACATCGTATTTGGAATGGA--ATGTAATTTATAAATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288804 56 +    378907 Tagtatggaataattgaaagcacatcgtatttggaatgga--atgtaatttataaatt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144348 56 + 121039945 TAATATGGAATAATTGAAAGCACGTCATATTTGGAATGGA--ATGTAATTTATAAATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355269 56 + 169600520 TAAAGTGCAATAATTGAAAGCACATTGTATTTGGAATGGA--ATGTAATTTATAAATT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351380 56 -   6271500 TAATGTGGAAGAATTGAAAGCATATCATATTTGGAATGCA--ATTTAATTTATAAATT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1810984 56 -   1987038 TAAAGTGCAATAATTGAAAGCACATTGTATTTGGAATGGA--ATGTAATTTATAAATT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21063856 55 -  24206276 TAATGTGGAATAATTGAAAA-ACATTGTGTTTGGAATGGA--ATGGAATTTATAAATT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297251 55 -   1458659 Taatgtggaataattgaaag-acatcgtatttggaatgga--atgtaatttacaaatt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7470819 56 -   9444221 TAATGTGGAATAATTGAAAGCACATTGTATTTGGAATGGA--ATATAATTTCTCAACT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 225227 56 -   2853901 TAATATGGAGTAATTGAAAGCACGTTGTGTTTGGAATGGA--GTATAATTTATAAATT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507015 56 -   3282555 TAATGTGGAATAACTGAAAGCACGTTGTGTTTGGAATGGA--ATATAATTTATAAATT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       292809 56 -   1024465 TAATGTGGAATAGTTGAAAGCATGTTGTGTTTGGAATGGA--ATTTAATTTATAAATT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       738128 56 -   3745603 TAATGTGGAATAATTGAAAGCACGTTGTGTTTGGAATGGA--ATATAATTTATAAATT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 921884 58 - 119751181 TAATGTGGAATAATGAAAAGCACTTTGTATTTTGAATGCAAAATATAATTTCTAAGCT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       645480 58 -   2566024 Taatgtggagtaatgaaaagcactttgtatttggaatgcaatatataatttctaagct
i proCoq1.NW_012149419v1    I 43 C 0
s otoGar3.GL873530            6762625 56 -  36342412 TCATGTGGAATAATGCAAGGCACATTGTATTTGGAATGTA--GTATAATTTCCAAACT
i otoGar3.GL873530          I 2 C 0
s mm10.chr9                  55176574 55 + 124595110 TAGTGTTGAATAAC-AAAAACATTTGGTATTTCAAATGAG--ATATACTTTCTAAAAT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 47717 56 -  40214260 TAATGTAGAATAATGAAAACCACATTGTATTTGAAATTTA--ATGTAATTTCTAAAAT
i canFam3.chr30             C 0 I 236
s dasNov3.JH569975              40243 56 -   2180720 TACGTTCAAGTAATGAGAAGCAAATGGTACTTGGAATTAA--ATACCATTTCTAAAAT
i dasNov3.JH569975          C 0 C 0
e macFas5.chr7              107345402 100 - 171882078 I

a score=1213638.000000
s hg38.chr15_KI270850v1_alt    190257  97 +    430880 CTGGCTTTACCTCTAACTCATGATATGCCTTCGGGCAAATTG-TTTTATCTGAATTC-TTGGATTTGATTTTCTGGAAAACAAAAGCTCTTAACTTTTA----
s panTro5.chr15              17999872  97 -  83230942 CTGGCTTTACCTCTAACTCATGATATGCCTTTGAGCAAATTG-TTTTATCTGAATTC-TTGGATTTTATTTTCTGGAAAACAAAAGCTCTTAAGTTTTA----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226184  97 -  99763055 CTGGCTTTACCTCTAACTCATGATATGCCTTTGAGCAAATTG-TTTTATCTGAATTC-TTGGATTTTATTTTCTGGAAAACAAAAGCTCTTAAGTTTTA----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288860  97 +    378907 ctggctttacctctaactcatgatatgcctttgggcaaattg-ttttatctgaattc-ttggatttgattttctGGAAAACAAAACCTCTTAACTTTTA----
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144404  98 + 121039945 CTGGCTTTACCTTTAACTCATGATATGTCTTTGAGCAAATTGTTTTTTTCTGAATTC-TTGGATTTGATTTTCTGGAAAACAAAGGCTCTTAACTTTTA----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355325  97 + 169600520 ATGTCTTTACCTCTAACTCATGATATGCCTTTGAGCAAACTG-TTTTATCTGAATTC-TTGTATTTGATTTTCTGGAAAACAAAAGCTCTTAACTTTTA----
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351436  96 -   6271500 CTGGCTTTACCTCTAACTCATGATATGCCTTTGAGCAAACT--TTTTATCTGAATTC-TTGGATTTGATTTTCTGGAAAACAAAAGCTCTTAACTTTTA----
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1811040  97 -   1987038 TTGTCTTTACCTCTAACTCATGATATGCCTTTGAGCAAACTG-TTTTATCTGAATTC-TTGTATTTGATTTTCTGGAAAACAAAAGCTCTTAACTTTTA----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21063911  97 -  24206276 CTGGGTTTACCTCTAACTCATGATATGCCTTTGAGCAAATTG-TTTTATGTGAATTC-TTGGATTTGGTTTTCTGGAAAACAAAAGCTCTTAACTTTTA----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297306  97 -   1458659 ctgggtttacctctaactcatgatatgcctttgagcaaattg-tttTATGTGAATTC-TTGGATTTGGTTTTCTGGAAAACAAAAGCTCTTAACTTTTA----
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7470875  98 -   9444221 CTGGCTTTACTTCTAGCTTATGAGACACCTTTGAGCAAATTG-CTTTATCTGAATTCTTTGGATTTGATTTCCTGGAAAACAAAAGCTCTTAACTTTTA----
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 225283  94 -   2853901 CTGGCTTCACCTCTAAGTCATGATATGCCTTTGAGCAA-----ATTTATCTGAATTCTTTGGATTTGATTTCCTGGAAAACAAAAGCTCTTAACTTTTA----
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507071  94 -   3282555 CTGGCTTCACCTCTAACTCATGATATGCCTTTGAGTAA-----ATTTATCTGAAGTCTTTGTATTTGATTTCCTGGAAAACAAAAGCTCTTAACTTGTA----
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       292865  94 -   1024465 CTGGCTTCACCTCTAACTCATGATATGCCTTTGAGCAA-----ATTTATCTGAATTCTTTGTATTTGATTTCCTGGAAAACAAAAGCTCTTAACTTTTG----
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       738184  94 -   3745603 CTGGCTTCACCTCTAACTCCTGATATGCCTTTGAGCAA-----ATTTATCTGAATTCTTTGGATTTGATTTCCTGGAAAACAAAAGCTCTTAACTTTTA----
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 921942  98 - 119751181 CTGGCATTGCCTCTAACTAATGATACACCTTTGAGCAAATTG-CTTTATCTGAATTCCTTGGATTTGATTTCCTAGAAAATAAAAGCTCTTAACattta----
i micMur3.chr3              C 0 I 46
s proCoq1.NW_012149419v1       645538  98 -   2566024 ctggcattgcctctaactaatgatatacctttgaggaaattg-ctttatctGAATTCCTTGGATTTGATTGCCTAGAAAATAAAAGCTCTTAACATTTA----
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6762681  94 -  36342412 CTAGCATTACCT----CTAATCATATGCCTTTAAGCAAATAG-CTTTATCTGAATTATTTGGATTTGATTTCCTATAAAATAAAAGCCCTTAACATTTA----
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55176629  69 + 124595110 CTGGTTTTGTTTCTAATTAACAATATGCCTTTGAACAAATTTTTTTTATTTGAGGGC---------------------AGTAAAAATTGT-------------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 48009  82 -  40214260 cTGGCTTTAGCTTTAACTAATGATATGTTTTTGAGCAAAATG-CTT----------------ATTCGATTTCCTAGAAAATAAATGCTCTTAACATTTA----
i canFam3.chr30             I 236 C 0
s dasNov3.JH569975              40299 101 -   2180720 CTGGTTTTACCTACAGTTAATGGTATGCCTTTGGGCAAACTG-CTTATCCAGAGGTC-ATAGATCTGATTGCCTGGACACTAAGAGCTCTTAACCTTTTTTTA
i dasNov3.JH569975          C 0 C 0
e macFas5.chr7              107345402 100 - 171882078 I

a score=100298.000000
s hg38.chr15_KI270850v1_alt    190354  9 +    430880 GCACTA-AAA
s panTro5.chr15              17999969  9 -  83230942 ACACTA-AAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226281  9 -  99763055 ACACTA-AAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288957  9 +    378907 GCACTA-AAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144502  9 + 121039945 GCACTA-AAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355422 10 + 169600520 GCAATACAAA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351532  9 -   6271500 GCACTA-AAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1811137  9 -   1987038 GCACTA-AAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064008  9 -  24206276 GCACTA-AAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297403  9 -   1458659 GCACTA-AAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7470973  9 -   9444221 GCACCA-AAG
i colAng1.NW_012112253v1    C 0 I 6
s calJac3.chrY                 225377  9 -   2853901 GCACTC-AAA
i calJac3.chrY              C 0 I 6
s saiBol1.JH378276             507165  9 -   3282555 GCACTC-aaa
i saiBol1.JH378276          C 0 I 6
s cebCap1.NW_016107979v1       292959  9 -   1024465 GCACTC-AAA
i cebCap1.NW_016107979v1    C 0 I 6
s aotNan1.NW_018511953v1       738278  9 -   3745603 GCACTC-AAA
i aotNan1.NW_018511953v1    C 0 I 6
s proCoq1.NW_012149419v1       645636  9 -   2566024 CCACTA-AAA
i proCoq1.NW_012149419v1    C 0 I 6
s otoGar3.GL873530            6762775  9 -  36342412 GCCCTA-AAA
i otoGar3.GL873530          C 0 I 6
s canFam3.chr30                 48091  9 -  40214260 GCatta-aaa
i canFam3.chr30             C 0 I 6
s dasNov3.JH569975              40400  9 -   2180720 GCatta-aaa
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 922040 46 - 119751181 I
e mm10.chr9                  55176698  0 + 124595110 C
e macFas5.chr7              107345402 100 - 171882078 I

a score=426913.000000
s hg38.chr15_KI270850v1_alt    190363 28 +    430880 -----TTATATTTAATACTAATCAGTACTTAAC
s panTro5.chr15              17999978 28 -  83230942 -----TTATATTTAATACTAATCAGTACTTAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226290 28 -  99763055 -----TTATATTTAATACTAATCAGTACTTAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288966 28 +    378907 -----TTATATTTAATACTAATCAGTACTTAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144511 28 + 121039945 -----TTATATTTTATACTAATCAGTACTTAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355432 28 + 169600520 -----TTATATTTAATACTAATCAGTACTTAAC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351541 28 -   6271500 -----TTATATGTTATACTAATCAGTACTTAAC
i macNem1.NW_012011056v1    C 0 I 1
s cerAty1.NW_012002657v1      1811146 28 -   1987038 -----TTATATTTAATACTAATCAGTACTTAAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064017 28 -  24206276 -----TTATATTTAATACTAATCAGTATTTAAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297412 28 -   1458659 -----TTATATTTAATACTAATCAGTACTTAAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7470988 28 -   9444221 -----TTATATTTAATACTAATCAGTCCTTACC
i colAng1.NW_012112253v1    I 6 C 0
s calJac3.chrY                 225392 28 -   2853901 -----TTACATCTAATACTAATCAGTACTTAAC
i calJac3.chrY              I 6 C 0
s saiBol1.JH378276             507180 28 -   3282555 -----ttatatttaataCTAATCAGTACTTAAC
i saiBol1.JH378276          I 6 C 0
s cebCap1.NW_016107979v1       292974 28 -   1024465 -----TTACATTTAATACTAATCAGTACTTAAC
i cebCap1.NW_016107979v1    I 6 C 0
s aotNan1.NW_018511953v1       738293 28 -   3745603 -----TTACATTTAATACTAATCAGTACTTAAC
i aotNan1.NW_018511953v1    I 6 C 0
s micMur3.chr3                 922086 28 - 119751181 -----ttacatttaatAGTAATCAATACTTTAC
i micMur3.chr3              I 46 C 0
s proCoq1.NW_012149419v1       645651 28 -   2566024 -----TTACATTTAATAGTAATCAATACTTAAC
i proCoq1.NW_012149419v1    I 6 C 0
s otoGar3.GL873530            6762790 28 -  36342412 -----TTACATTTAATACCAACCAGTACTTAAC
i otoGar3.GL873530          I 6 C 0
s mm10.chr9                  55176698 24 + 124595110 -----TTACATTTAATAAT----AGTATTTTGC
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 48106 28 -  40214260 -----ttacattttatattaatcaatatttaaC
i canFam3.chr30             I 6 C 0
s dasNov3.JH569975              40409 33 -   2180720 tatatttatatttaataataaCCAACACTTGAT
i dasNov3.JH569975          C 0 C 0
e macFas5.chr7              107345402 100 - 171882078 I

a score=750788.000000
s hg38.chr15_KI270850v1_alt    190391 68 +    430880 CTGT-ATTTGGTTATTTTTTGGAAGAGAAACTACTGAGTTTAAAAAATTTTATGTTTGCATAAAAGGAG
s panTro5.chr15              18000006 68 -  83230942 CTGT-ATTTGGTTATTTTTTGGAAGAGAAACTACTGAGTTTAAAAAATTTTATGTTTGCATAAAAGGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226318 68 -  99763055 CTGT-ATTTGGTTATTTTTTGGAAGAGAAACTACTGAGTTTAAAAAATTTTATGTTTGCATAAAAGGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       288994 68 +    378907 CTGT-ATTTGGTTATTTTTTGGAAGAGAAACTACTGAGTTTCAAAAATTTTATGTTTGCATAAAAGGAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144539 68 + 121039945 CTGT-ATTTGGTTATGTTTTGGAAGAGAAACTACTGAGTTTAAAAAACTTTATGTTTGCATAAAAGGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355460 68 + 169600520 CTGT-ATTTGGTTAGTTTTTGGAAGAGGAACTACTGAGTTTAAAAAATTTTATGTTTCCACAGAAGGAG
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1811174 68 -   1987038 CTGT-ATTTGGTTAGTTTTTGGAAGAGGAACTACTGAGTTTAAAAAATTTTATGTTTCCACAGAAGGAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064045 68 -  24206276 CGGT-ATGTGGTTATTTTTTGGAAGAGAAACTATTGAGTTTTAAAAATTTTATGTTTGCATAAAAGGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297440 68 -   1458659 CTGT-ATGTGGTTATTTTTTGGAAGAGAAACTACTGAGTTTTAAAAATTTTATGTTTGCATAAAAGGAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471016 68 -   9444221 CTGT-ATTTGGTTATTTTTAGGCAGAGAAACTGGTAAGTTTAAAAAATTTTATGTTTGCATAAAAGGAG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 225420 64 -   2853901 CTGT-ATTTGGTTATTTTTAGGAAGGGGAAGTA---AGCTTAAAAAA-TTTATGTTCGAATAAAAGGAG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507208 64 -   3282555 CTGT-GTTTGGTTATTTTTAGGGAGGGGAACTA---AGTTTAAAAAA-TTTATGTTCGAATAAAAGGAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293002 64 -   1024465 CTGT-ATTTGGTTATTTTTAGGAAGGGGAACTA---GGTTTAAAAAA-TTTATGTTTGAATAAAAGGAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       738321 64 -   3745603 ATGT-ATTTGGTTATTTTTAGGAAGGGGAACTA---AGTTTAAAAAA-TTTATGTTCGAATAAAAGGAG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 922114 68 - 119751181 CTGT-ATTTGGTTATTTTTAGGAAGAGGAGCTACTAAGTTTAAAAAGTTCTGTATTTGCATACAAGGTG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       645679 68 -   2566024 CTGT-ATTCGGTTATTTTTAGGAAGAGGAACTACTAAGTTTAAAAAGTTCTGTATTTGCATAAAAGGTG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6762818 68 -  36342412 CTGT-ATTTGGTTATTTTTAGGAAGAGGAACTACTAAGTTTAAAAAGGTCTATATTTGCGTAAAAGGTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55176722 64 + 124595110 TTATAATTTGGTTAATTTTAGGAA---AAACTACTAAGTTT--AAAGTTTTGTGTTTACAgttggggag
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 48134 57 -  40214260 TCAT-ATTTGGTTGTTTTTAAGAAGAGGAACT----ATTTTCAAAAATTCTGGATTTAAATA-------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              40442 61 -   2180720 CTGT-ATTTGATTGTTTCTAGAAAGAGGAACTACT-------ATAAATATTATGTTTGAATAAAAGGAG
i dasNov3.JH569975          C 0 I 60
e macNem1.NW_012011056v1      5351569  1 -   6271500 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=13923.000000
s hg38.chr15_KI270850v1_alt    190459 1 +    430880 A
s panTro5.chr15              18000074 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226386 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289062 1 +    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144607 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355528 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1811242 1 -   1987038 A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064113 1 -  24206276 A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297508 1 -   1458659 A
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471084 1 -   9444221 A
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 225484 1 -   2853901 A
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507272 1 -   3282555 A
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293066 1 -   1024465 A
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       738385 1 -   3745603 A
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 922182 1 - 119751181 A
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       645747 1 -   2566024 A
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6762886 1 -  36342412 A
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55176786 1 + 124595110 a
i mm10.chr9                 C 0 I 1459
e dasNov3.JH569975              40503 60 -   2180720 I
e canFam3.chr30                 48191 0 -  40214260 C
e macNem1.NW_012011056v1      5351569 1 -   6271500 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=657281.000000
s hg38.chr15_KI270850v1_alt    190460 62 +    430880 ATTTCAGAATATTTTAGAGACTACTTGCCAGAAGTAGTGAAACTGTCTCTTGCTGAAAAATC
s panTro5.chr15              18000075 62 -  83230942 ATTTCAGAATATTTTAGAGACTACCTGCCAGAAGTAGTGAAACTGTCTCTTGCTGAAAAATC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226387 62 -  99763055 ATTTCAGAATATTTTAGAGACTACCTGCCAGAAGTAGTGAAACTGTCTCTTGCTGAAAAATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289063 62 +    378907 ATTTCAGAATATTTTAGAGACTACTTGCCAGAAGTAGTGAAACTGTCTCTTGCTGAAAAATC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144608 62 + 121039945 ATTTCAGAATATTTTAGAGACTACTTGCCAGAAGTAGTGAAACTGTCTCTTGCTGAAAAATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355529 62 + 169600520 GTTTGAGAATATTTTAGGTACTACTCACCAGAAGTAGTGAAACTGTCTCTTGTTGAAAAATC
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1811243 62 -   1987038 GTTTGAGAATATTTTAGGTACTACTCACCAGAAGTAGTGAAACTGTCTCTTGTTAAAAAATC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064114 60 -  24206276 ATTTGAGAATATTTTAGGGACTACTTGCTGGAGGTAGTGAAACTGTCTC--GTTGAAAAATC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297509 60 -   1458659 ATTTGAGAATATTTTAGGGACTACTTGCTGGAGGTAGTGAAACTGTCTC--GTTGAAAAATC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471085 62 -   9444221 ATTTGAGAACGTGTTAGGGACTACTCACCAGAAGTAGTGAAACTGTCTCTTGTTGAAAAATC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 225485 62 -   2853901 ATTTGAGAAAATTTTACAGACTAATCACCGGAAGTAATGAAACTGTCTCTTGTTGAAAAATC
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507273 62 -   3282555 ATTTGAGAAAATTTTACAGACTCATCACCAGAAGTAATGAAACTGTCTCTTGTTGAAAAATC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293067 62 -   1024465 ATTTGAGAAAATTTTACAAACTAATCACCAGAAGTAATGAAACTGTCTCTTGTTGAAAAATC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       738386 62 -   3745603 ATTTGAGAAAATTTTACAGACTAATCACCAGAAGTAATGAAACTGTCTCTTGTTGAAAAATC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 922183 62 - 119751181 ATTTGAGAACATTTCAGGGTCTACTTGCCAGGAACAGTGAAACCATTTCTTGTTGAAAAATC
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       645748 62 -   2566024 ATTTGAGAACATTTCAAGGACTACTTGCCAGGAACAGTGAAACCATCTCTTGTTGAAAAATC
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6762887 61 -  36342412 ATTTAAGAACACTTTAA-GACTACTTACCAGGAACAGTGAAACCATCTCTTGTTGAAAAATT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 48191 62 -  40214260 ATTTGAGAACATTTCAGGGACTACTCACTAGAAGTAATGAAGATATCTCATGTTGAAAAATC
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55176787 1459 + 124595110 I
e dasNov3.JH569975              40503 60 -   2180720 I
e macNem1.NW_012011056v1      5351569  1 -   6271500 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=8952.000000
s hg38.chr15_KI270850v1_alt    190522 1 +    430880 A
s panTro5.chr15              18000137 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226449 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289125 1 +    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144670 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355591 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1811305 1 -   1987038 A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064174 1 -  24206276 A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297569 1 -   1458659 A
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471147 1 -   9444221 A
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 225547 1 -   2853901 A
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507335 1 -   3282555 A
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293129 1 -   1024465 A
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       738448 1 -   3745603 A
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 922245 1 - 119751181 A
i micMur3.chr3              C 0 I 207
s proCoq1.NW_012149419v1       645810 1 -   2566024 A
i proCoq1.NW_012149419v1    C 0 I 215
s otoGar3.GL873530            6762948 1 -  36342412 T
i otoGar3.GL873530          C 0 C 0
e mm10.chr9                  55176787 1459 + 124595110 I
e dasNov3.JH569975              40503 60 -   2180720 I
e canFam3.chr30                 48253 0 -  40214260 C
e macNem1.NW_012011056v1      5351569 1 -   6271500 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=2548.000000
s hg38.chr15_KI270850v1_alt    190523 1 +    430880 T
s panTro5.chr15              18000138 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226450 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289126 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144671 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              21064175 1 -  24206276 T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297570 1 -   1458659 T
i manLeu1.NW_012105520v1    C 0 C 0
s otoGar3.GL873530            6762949 1 -  36342412 T
i otoGar3.GL873530          C 0 I 288
e micMur3.chr3                 922246 207 - 119751181 I
e proCoq1.NW_012149419v1       645811 215 -   2566024 I
e aotNan1.NW_018511953v1       738449 0 -   3745603 C
e mm10.chr9                  55176787 1459 + 124595110 I
e calJac3.chrY                 225548 0 -   2853901 C
e dasNov3.JH569975              40503 60 -   2180720 I
e canFam3.chr30                 48253 0 -  40214260 C
e cebCap1.NW_016107979v1       293130 0 -   1024465 C
e colAng1.NW_012112253v1      7471148 0 -   9444221 C
e cerAty1.NW_012002657v1      1811306 0 -   1987038 C
e macNem1.NW_012011056v1      5351569 1 -   6271500 I
e macFas5.chr7              107345402 100 - 171882078 I
e rheMac8.chr7               60355592 0 + 169600520 C
e saiBol1.JH378276             507336 0 -   3282555 C

a score=953580.000000
s hg38.chr15_KI270850v1_alt    190524 136 +    430880 TCAAAGAAATTtgtcttagtctgttttatagtattgtaacagaataacagagagtgagtaatttatgaagaacagtcatttattttctgacagttctggagtctgggaaatccaagatgaaaatatcaacatttgg
s panTro5.chr15              18000139 136 -  83230942 TCAAAGAAATTtgtcttagtctgttttatagtattgtgacagaataagagagagtgagtaatttatgaagagcagtcatttattttctgacagttctggagtctgggaaatccaagatgaaaatatcaacatttgg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226451 136 -  99763055 TCAAAGAAATTtgtcttagtctgttttatagtattgtgacagaataagagagagtgagtaatttatgaagagcagtcatttattttctgacagttctggagtctgggaaatccaagatgaaaatatcaacatttgg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289127 136 +    378907 TCAAAGAAATTtgtcttagtctgttttgtagtattgtaacagaataacagagagtgagtaatttatgaagaacagtcatttattttctgacagttctggagtctgggaaatccaagatgaaaatatcaacatttgg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144672 136 + 121039945 TCAAAGAAATTtgtcttagtctgttttatagtgttgtaacagaacaacagagagtgagtaatttatgaagaacagtcatttattttctgacagttctggagtctgggaaatccaagatgaaaatatcaacatttgg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355592 136 + 169600520 TCAAAGAAATTtgtcttagtctgttttatagtgttgtaacagaatagcagagagtgagtaatttataaagaacagtcatttattttctgacacttctggagtctgggaaatccaagatgaaaatatcaacatttgg
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1811306 136 -   1987038 TCAAAGAAATTtgtcttagtctgttttatagtgttgtaacagaatagcagagagtgagtaatttataaagaacagtcatttattttctgacagttctggagtctgggaaatccaagatgaaaatatcaacatttgg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064176 136 -  24206276 TCAAAGACATTtgtcttagtctgttttatagtgttgtaacagaataacagagagtgagtaatttataaagaacagtcatttattttctgactgttctggagtctgggaaatccaagatgaaaatatcaacatttgg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297571 136 -   1458659 TCAAAGACATTtgtcttagtctgttttatagtgttgtaacagaataacagagagtgagtaatttataaagaacagtcatttattttctgacagttctggagtctgggaaatccaagatgaaaatatcaacatttgg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471148 134 -   9444221 TCAAGAGATTTTGttt--gtctgtttcatgctgctataatagaatatcagagacagggtaatttataaagaacagacatttattttctaacagttctggagactgggaagtccaagatgaaaataccaacattggg
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 225548 135 -   2853901 TCAAAGAATTTtgttttagtctgttttatgctgttataacagaatactggagactgggtaatttatacagaacagacatttattttcccactgttctggaggct-ggaagtccaagatcaagataccagcatttgg
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507336  99 -   3282555 TCAAAGATTTTtgttttagtctgttttatgctgttataacagaatactggagactgg-------------------------------------tctggaggctgggaagtccaagaccaagataccagcatttgg
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293130 136 -   1024465 TCAAAGAATTTtgttttagtctgttttatgctgttataacagaatactggagactgggtaatttatacagaacagacatttattttctcactgttctggaggctggaaagtccaagatcaagataccagcatttgg
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       738449 136 -   3745603 TCAAAGAATTTtgttttagtctgttttatgctgttataacagaatactggagactgggtaatttatacagaacagacatttattttctcactgttctggaggctgggaagtctaagatcaagatatcagcatttgg
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6763238 132 -  36342412 TCCAAGAATTTtgtcttaatccatgt-atactgctataac--aatatctgagactggg-aatttataaagaatggaaatttattttctcatagttttggaagtgaggaagtcctagaataaggtgttggcatttga
i otoGar3.GL873530          I 288 C 0
e micMur3.chr3                 922246 207 - 119751181 I
e proCoq1.NW_012149419v1       645811 215 -   2566024 I
e mm10.chr9                  55176787 1459 + 124595110 I
e dasNov3.JH569975              40503  60 -   2180720 I
e canFam3.chr30                 48253   0 -  40214260 C
e macNem1.NW_012011056v1      5351569   1 -   6271500 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=586660.000000
s hg38.chr15_KI270850v1_alt    190660 69 +    430880 tgtc---tcaggaccttcttgtttcatcctcacatgg-tagcaggcagaagggcaggagagcaagctagtcca
s panTro5.chr15              18000275 69 -  83230942 tgtc---tcaggaccttcttgttttatcctcacatgg-tagcaggcagaagggcaggagagcaagctggtcca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226587 69 -  99763055 tgtc---tcaggaccttcttgttttatcctcacatgg-tagcaggcagaagggcaggagagcaagctggtcca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289263 66 +    378907 tgtc---tcaggac---cttgttttatcctcacatgg-tagcaggcagaagggcaggagagcaagctagtcca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144808 69 + 121039945 tgtc---tcaggaccttcttgtttcatcctcacatgg-tagcaggcagaagggcaggagagcaagctagtcca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355728 69 + 169600520 tgtc---tcagggtcttcttgttgcatcctcatgtgg-tagcaggcagaagggcaggagagcaagctagtcca
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351570 69 -   6271500 TGTC---TCAGGGCCTTCTTgttgcatcctcacatag-tagcaggcagaagggcaggagagcaagctagtcca
i macNem1.NW_012011056v1    I 1 C 0
s cerAty1.NW_012002657v1      1811442 69 -   1987038 tgtc---tcagggtcttcttgttgcatcctcatgtgg-tagcaggcagaagggcaggagagcaagctagtcca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064312 69 -  24206276 tgtc---tcagggccttttcattgcatcctcacatgg-tagcaggcagaagggcaggagagcaagttagtcca
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297707 69 -   1458659 tgtc---tcagggccttcttgtttcatcctcacatgt-tagcaggcagaagggcaggagagcaagttagtcca
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471282 69 -   9444221 tgtc---tgagggccttcttgttgcatcctcacatgg-tagaaggcagaagggcaggagagccagctagtcca
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 225683 70 -   2853901 tgtc---tgagggcctttttgttgcattctcacatggatagaaagcagaagggcaggagagtaagctagtcca
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507435 70 -   3282555 tgtc---taagggccttcttgttgcattctcacatgggtagaaggcagaagggcaggagagtaagttagtcca
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293266 70 -   1024465 cgtc---taagggccttcttgttgcatttgcacatgggcagaaggcagaagggcaggagagtaagctagtcca
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       738585 70 -   3745603 tgtc---tcagggccttcttgttgcattctcacatgggtagaaggcagaagggcaggagagtaagctagtcca
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6763370 67 -  36342412 tgtctggtgagggtcgtcttgt---gtcctcacatgg-cag-aaccaggagagcaagacagaaagctaaatg-
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 922246 207 - 119751181 I
e proCoq1.NW_012149419v1       645811 215 -   2566024 I
e mm10.chr9                  55176787 1459 + 124595110 I
e dasNov3.JH569975              40503 60 -   2180720 I
e canFam3.chr30                 48253  0 -  40214260 C
e macFas5.chr7              107345402 100 - 171882078 I

a score=56055.000000
s hg38.chr15_KI270850v1_alt    190729 6 +    430880 atgtgt
s panTro5.chr15              18000344 6 -  83230942 atgtgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226656 6 -  99763055 atgtgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289329 6 +    378907 atgtgt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144877 6 + 121039945 atgtgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355797 6 + 169600520 atgtgt
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351639 6 -   6271500 gcgtgt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1811511 6 -   1987038 atgtgt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064381 6 -  24206276 atgtgt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297776 6 -   1458659 atgtgt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471351 6 -   9444221 atgtgt
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 225753 6 -   2853901 gtgtgt
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507505 6 -   3282555 gtgtgt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293336 6 -   1024465 gcgtgt
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       738655 6 -   3745603 gtgtgt
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 922453 6 - 119751181 atctgt
i micMur3.chr3              I 207 C 0
s otoGar3.GL873530            6763437 4 -  36342412 --ctgt
i otoGar3.GL873530          C 0 I 2
e proCoq1.NW_012149419v1       645811 215 -   2566024 I
e mm10.chr9                  55176787 1459 + 124595110 I
e dasNov3.JH569975              40503 60 -   2180720 I
e canFam3.chr30                 48253 0 -  40214260 C
e macFas5.chr7              107345402 100 - 171882078 I

a score=884459.000000
s hg38.chr15_KI270850v1_alt    190735 80 +    430880 gaagcctcattcataaggg-------ccttaatcccatgaaggagaaaggagccctcttggcctaatcatctcttaaaag---tcctacc
s panTro5.chr15              18000350 80 -  83230942 gaagcctcattcataaggg-------ccttaatcctatgaaggagaaaggagccctcttggcctaatcacctcttaaaag---tcctacc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226662 80 -  99763055 gaagcctcattcataaggg-------ccttaatcctatgaaggagaaaggagccctcttggcctaatcacctcttaaaag---tcctacc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289335 80 +    378907 gaagcctcattcataaggg-------ccttaatcccatgaaggagaaaggagccctcttggcctaatcatctcttaaaag---tcctacc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144883 80 + 121039945 ggggcctcgttcataaggg-------ccttaatcccatgaaggagaaaggagccttcttggcctaatcatctcttaaaag---tcctacc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355803 80 + 169600520 gaagccttatttgtaaggg-------acttaatcccattaaggaggcaggagccctcttggcctaatcacctcttcaaag---tcctacc
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351645 87 -   6271500 gaagcctcattcataagggccttaatccttaatcccatgaaggaggaaggagccctcttggcctaataacctcttaaaag---tcctacc
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1811517 80 -   1987038 gaagccttatttgtaaggg-------acttaatcccattaaggaggcaggagccctgttggcctaatcacctcttcaaag---tcctacc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064387 80 -  24206276 gaggcctcattcataaggg-------ccttaatcccatgaaggaggaaggagccctcttggcctaatgacctcttaaaag---tcctacc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297782 80 -   1458659 gaggcctcattcataaggg-------ccttaatcccatgaatgaggaaggagccctcttggcctaatgacctcttaaaag---tcctacc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471357 80 -   9444221 gacgcctcattcagaaggg-------ccttaatcccattaaggaggaaggagccctcttggcctaatcacctcttaaagg---tcctatc
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 225759 80 -   2853901 gaagcctcattcatgaggg-------ccttaatcccattaaggaggaaggagccctcttggcttaatctcctcttaaagg---tcctacc
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507511 83 -   3282555 gaagcctcattcatgaggg-------ccttaatcccattaaggaggaaggagccctcttggcttaatctcctcttaaaggttcttctacc
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293342 80 -   1024465 gaagcctcattcatgaggg-------ccttaatcccattaaggaggaaggagccctcttggcttaatctcctcttaaagg---ttctacc
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       738661 80 -   3745603 gaagcctcattcttgaggg-------ccttaatcccattgaggaggaaggagccctcttggcttaatctcctcttaaagg---tcctact
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 922459 80 - 119751181 gaagcctcgtttgtaaggg-------tcttaatctcattaaagaacaaggagctctcgtgacctaatcacctcttaaggg---ccctgcc
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       646026 80 -   2566024 gaagcctcatttgtaaggg-------ccttaacctcagcagagagcagggagctctcgtgacctaatcacctcgtaaggg---ccctgcc
i proCoq1.NW_012149419v1    I 215 C 0
s otoGar3.GL873530            6763443 79 -  36342412 gcagcctcattagtgaggg-------ccttaatctcactgaagaggaagga-cccttgtgacctaatcacccctgaaggg---cccttcc
i otoGar3.GL873530          I 2 C 0
e mm10.chr9                  55176787 1459 + 124595110 I
e dasNov3.JH569975              40503 60 -   2180720 I
e canFam3.chr30                 48253  0 -  40214260 C
e macFas5.chr7              107345402 100 - 171882078 I

a score=330817.000000
s hg38.chr15_KI270850v1_alt    190815 31 +    430880 tcttaatatcatcacattggcaacact------tgaa
s panTro5.chr15              18000430 31 -  83230942 tcttaatatcatcacattggcaacact------tgaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226742 31 -  99763055 tcttaatatcatcacattggcaacact------tgaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289415 31 +    378907 tcttaatatcatcacattggcaacact------tgaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144963 31 + 121039945 tcttaatatcgtcacattggcaacagt------tgaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355883 31 + 169600520 tattaatatcatcacattggcaacact------tgaa
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351732 31 -   6271500 tcttaatatcatcactttggcaacact------tgaa
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1811597 31 -   1987038 tattaatatcatcacattgggaacact------tgaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064467 37 -  24206276 tgttaatatcatcacgctgacaacatgaacagatgaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297862 37 -   1458659 tgttaatatcatcacattgacaacatcaacagatgaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471437 31 -   9444221 tcttaatatcatcacattagaaacacc------tgaa
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 225839 31 -   2853901 tcttaataagatcacattggcaacacc------tgaa
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507594 31 -   3282555 tcttaataagatcatattggcaacacc------tgaa
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293422 31 -   1024465 tcttaataagatcacattgacaacacc------tgaa
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       738741 31 -   3745603 tcttcataagatcacattggcaacacc------tgaa
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 922539 31 - 119751181 tcttaaaaccatcacactggcaacagc------tgaa
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       646106 31 -   2566024 tcttcatatcatcacactggcaacacc------tgaa
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6763522 31 -  36342412 tcttaataccatcatgctggcaacacc------tgaa
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55178246 30 + 124595110 TCTTAATACTATCATAAC-ACCATACC------TGAT
i mm10.chr9                 I 1459 C 0
e dasNov3.JH569975              40503 60 -   2180720 I
e canFam3.chr30                 48253  0 -  40214260 C
e macFas5.chr7              107345402 100 - 171882078 I

a score=301703.000000
s hg38.chr15_KI270850v1_alt    190846 22 +    430880 ttttggagggaatacattcaaa
s panTro5.chr15              18000461 22 -  83230942 ttttggagggaatacattcaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226773 22 -  99763055 ttttggagggaatacattcaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289446 22 +    378907 ttttggagggaatacattcaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102144994 22 + 121039945 ttttggagggaatacattcaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355914 22 + 169600520 ttttggagggaatacattccaa
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351763 22 -   6271500 ttttggacagaatacattcaaa
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1811628 22 -   1987038 ttttggagggaatacattccaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064504 22 -  24206276 ttttggagggaatacattccaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297899 22 -   1458659 ttttggagggaatacattccaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471468 22 -   9444221 ttttggagggaacacattcaaa
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 225870 22 -   2853901 ttttggagggaacacattcaaa
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507625 22 -   3282555 ttttggagggagcacattcaaa
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293453 22 -   1024465 ttttggagggaacacattcaaa
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       738772 22 -   3745603 ttttggagggaacacattcaaa
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 922570 22 - 119751181 ttttggaggggacacattcaaa
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       646137 21 -   2566024 ttttggaggggacacattcaa-
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6763553 22 -  36342412 ttttggaggggacacatttaga
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55178276 21 + 124595110 TTTTGGAGGGGA-ACATTTAAA
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              40563 22 -   2180720 TTTTGTTGAAAATTCATCTAAG
i dasNov3.JH569975          I 60 C 0
e canFam3.chr30                 48253  0 -  40214260 C
e macFas5.chr7              107345402 100 - 171882078 I

a score=1413723.000000
s hg38.chr15_KI270850v1_alt    190868 109 +    430880 cagtagcaAATTTAGTAGAGCAAATTCCAAAGACATTGAGCCTAGGCCA-----GCTGTCAGTCATGGGTATAATTTTAGATGTTTTCAGGCTCTGAAGCTTTGCACTT-AAATT
s panTro5.chr15              18000483 109 -  83230942 cagtagcaAATTTAGTGGAGCAAATTCCAAAGACATTGAGCCTAGGCCA-----GTTGTCAGTCATGGGTATAATTTTAGATGTTTTCTGGCTCTGAAGCCTTGCATTT-AAATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226795 109 -  99763055 cagtagcaAATTTAGTGGAGCAAATTCCAAAGACATTGAGCCTAGGCCA-----GTTGTCAGTCATGGGTATAATTTTAGATGTTTTCTGGCTCTGAAGCCTTGCATTT-AAATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289468 109 +    378907 cagtagcaAATTTAGTAGAGCAAATTCCAAAGACATTGAGCCTAGGCCA-----GCTGTCAGTCATGGGTATAATTTTAGATGTTTTCAGGCTCTGAAGCTTTGCACTT-AAATT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145016 101 + 121039945 cagtagcaAATTTAGTAGAGCACATTCCAA--------AGCCTAGGCCA-----GTTGTCAGTCATGGGTATAATTTTAGATGTTTTCTGGCTCTGAAGCCTTGCATAT-AAATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60355936 109 + 169600520 cagtagcaAATTTAGTAGAGCAAATTCCAAAGACATTGAGCCTAGGCCA-----GTTGCCAGTCATGGGTATAATTTTAGAGGTTTTCAGGCTCTGAAGCTTTGCATTT-AAATT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351785 108 -   6271500 cagtag-AAATTTAGTACAGCAAATTCCAAAGACATGGAGCCTAGGCCA-----GTTGTCAGTCATGGGTATAATTTTAGATGTTTTCAGGCTCTGAAGCTTTGCATTT-AAATT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1811650 109 -   1987038 cagtagcaAATTTAGTACAGCAAATTCCAAAGACATTGAGCCTAGGCCA-----GTTGTCAGTCATGGGTATAATTTTAGAGGTTTTCAGGCTCTGAAGCTTTGCATTT-AAATT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064526 109 -  24206276 cagtagcaAATTTAGTAGAGCAAATTCCAAAGACATTGAGCTTAGGCCA-----GCTGTCAGTCATGGGTGTAATTTTAGATGTTTTCAGGCTCTGAAGCTTTGCATTT-AAATT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       297921 109 -   1458659 cagtagcaAATTTAGTAGAGCAAATTCCAAAGACATTGAGCTTAGGCCA-----GCTGTCAGTCATGGGTATAATTTTAGATGTTTTCAGGCTCTGAAGCTTTGCATTT-AAATT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471490 109 -   9444221 gggtagcaAATTTAGTAGAGCAAATTCCAAAGACATTGAGCCTAGGCCA-----GTTGTCAGTTATGGGTATAATTTTAGATGTTTTCAGACTCTGAAGCTTTGCATTT-AAATT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 225892 110 -   2853901 tcatagcaAATTTAGTAGAGCAAATTCCAAAGACATTGAGCTTAGGGCA-----GTTGTCAGTCATGGGTATAATTTTAGATGTTTTCAGGCTCTGAAGCTTTGCATTTAAAAAT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507647 109 -   3282555 tcatagcaAATGTAGTAGAGCAAATTCCAAAGACATTGAGCTTAGGCCA-----GTTGTCAGTCATGGGTATAATTTTAGATGTTTTCAAGCTCTGAAGCTTTGCATTT-AAAAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293475 109 -   1024465 tcaaagcaAATTTAGTAGAGCAAATTCCAAAGACATTGAGCTTAGGCCA-----GTTGTCAGTCATGGATGTAATTTTAGATGTTTTCAAGCTCTAAAGCTTTGCATTT-GAAAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       738794  98 -   3745603 tcatagcaAATTTAGTAGAGCAAATTCCA-----------CTTAGGCCA-----GTTGTCATTCATGGGTATAATTTTAGATGTTTTCAAGCTCTGAAGCTTTGCATTT-AAAAT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 922592 113 - 119751181 ccatagcaAATTTAGTAGAGCATATTCCAAAGACGTTGAGCTTAGGCCAG-GTAGTTGTCAATCATTGATATAATTTTAGAGGTTTTCAGGCTCTGAAGCTTTGCATTT-AAATT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       646158  99 -   2566024 -------------agtagagcaGATTCCAAAGATGTTGAGCTTAGGCCAG-TCAG-TGTCCGTCATTGATGTAATTTTAGAGGTTTTCAGGCTCTGAAGCTTTGCATTT-AAATT
i proCoq1.NW_012149419v1    C 0 I 391
s otoGar3.GL873530            6763575 110 -  36342412 ccatagcaAATTTAGTAGAGCAAATTCCAAAGAC--TGAGCTTAGGCCA--TTAGTTGTCAGTCACTGATAAAATTTTAGAGGTTTTCGGGCTCTGAAACTTTACATTT-AAATT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55178297  89 + 124595110 ---TAACAAGTTTTGT--AGCAACTTTCCAAGGCATTAAGAT------A-----ATTGTCAGTTACCAATAGATCTTTAG---------GCTTTTGAACATTTGAATTT-AAATT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 48253 108 -  40214260 CTATAA-GAATTTGGTAGAACAGATTCTAA-GACCTTGACCTTAGGCCAGTTCAGTTGCCAGCCACTGATACAATTT--GAGGTTTTCAGGCTCTGAAGCTTTG--TTT-AAATT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              40585 104 -   2180720 -------AATTCAAGTAGGGTAGATTCCAA-GGCATTGAGCTTAGACCA-GTTAGTTGTCAGTCATTGATAGAATTTTATAGATTTTTGGACTCTGAAGCTTTGCAATT-AATT-
i dasNov3.JH569975          C 0 C 0
e macFas5.chr7              107345402 100 - 171882078 I

a score=266405.000000
s hg38.chr15_KI270850v1_alt    190977 23 +    430880 TGAACTTCAGAACAAAGATCTGT
s panTro5.chr15              18000592 23 -  83230942 TGAACTTCAGAACAAAGATCTAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226904 23 -  99763055 TGAACTTCAGAACAAAGATCTAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289577 23 +    378907 TGAACTTCAGAACAAAGATCTGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145117 23 + 121039945 TGAACTTCAGAACAAAGATCTAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356045 23 + 169600520 CAAACCTCACAACAAAGATCTGT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351893 23 -   6271500 TAAACTTTGGAACAAAGATCTAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1811759 23 -   1987038 CAAACCTCACAACAAAGATCTGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064635 23 -  24206276 TAAACTTCGGAACAAAGATCTAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298030 23 -   1458659 TAAACTTCGGAACAAAGATCTAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471599 23 -   9444221 GAGACTTCAGAACAAAGATCTAT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226002 23 -   2853901 CAGACTTTGGAACAAAGATCTGT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507756 23 -   3282555 CAGACTTCGGAACAAAGATCTGT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293584 23 -   1024465 CAGACTTCGGAACAAAGATCTGT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       738892 23 -   3745603 CAGACTTCGGAACAAAGATCTGT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 922705 23 - 119751181 CAAACTTTGGAATGAAGATCTGT
i micMur3.chr3              C 0 I 56
s otoGar3.GL873530            6763685 21 -  36342412 CAAACTTCAGAGTGAAGATCT--
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55178386 23 + 124595110 CAGGTTTTGAAATAAAGATCCAA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 48361 23 -  40214260 CAGAATTCAGAGTGGAAGTATGT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              40689 23 -   2180720 CAGACTTCAGAACAAAGATGTAT
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       646257 391 -   2566024 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=456209.000000
s hg38.chr15_KI270850v1_alt    191000 41 +    430880 GTCTCTGCATTGACCAAATAGAATGTATGTGAATTCCATGG
s panTro5.chr15              18000615 41 -  83230942 GTCTCTGCATTGACCAAATAGAATGTATGTGAATTCCATGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226927 41 -  99763055 GTCTCTGCATTGACCAAATAGAATGTATGTGAATTCCATGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289600 41 +    378907 GTCTCTGCATTGACCAAATAGAATGTATGTGAATTCCATGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145140 41 + 121039945 GTCTCTGCATTGACCAAATAGAATTTATGTGAATTCCATGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356068 41 + 169600520 GTCTCTTCTTTGACCAAATAGAAGGTATGTGAATTCCATGG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351916 41 -   6271500 GTCTCTGCATTGACCAAATAGAATGTATGTGAATTCCATGG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1811782 41 -   1987038 GTCTCTTCTTTGACCAAATAGAAGGTATGTGAATTCCATGG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064658 41 -  24206276 ATCTCTGCATTGACCAAATAGAATGTATGTGAATTCCATGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298053 41 -   1458659 ATCTCTGCATTGACCAAATAGAATGTATGTGAATTCCATGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471622 41 -   9444221 GTCTCTGCATTGACCAAATAGAAGGTATGTGAATTTTATGG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226025 41 -   2853901 GTCTTTGTATTGACCTAATAGCAGGTATGTGAATTCCATGG
i calJac3.chrY              C 0 I 2
s saiBol1.JH378276             507779 41 -   3282555 GTCTTTGTATTGACCAAATAGCAGGTATGTGAATTCCATGG
i saiBol1.JH378276          C 0 I 2
s cebCap1.NW_016107979v1       293607 41 -   1024465 GTCTTTGTATTGACCAAATAGCAGGTATGTGAATTCCGTGG
i cebCap1.NW_016107979v1    C 0 I 25
s aotNan1.NW_018511953v1       738915 41 -   3745603 GTCTTTATATTGACCAAATAGTGGATATGTGAATTCCATGG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6763706 41 -  36342412 GTCTCTGCATTGATTGGATAGAAGGTATATGAATTCTGTGG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55178409 39 + 124595110 --AGCTCCATTGACCAGATAAAATGCATAAGAATTTCATGA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 48384 39 -  40214260 --GTCTACATTGATCATGTAAAACATATCTGAATTCTACAG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              40712 37 -   2180720 --GTCTACGTTGACAGGATAAAAAGTATATGAAG--CATAG
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 922728 56 - 119751181 I
e proCoq1.NW_012149419v1       646257 391 -   2566024 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=11849.000000
s hg38.chr15_KI270850v1_alt    191041 1 +    430880 T
s panTro5.chr15              18000656 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226968 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289641 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145181 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356109 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351957 1 -   6271500 T
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1811823 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064699 1 -  24206276 T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298094 1 -   1458659 T
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471663 1 -   9444221 T
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226068 1 -   2853901 T
i calJac3.chrY              I 2 C 0
s saiBol1.JH378276             507822 1 -   3282555 T
i saiBol1.JH378276          I 2 C 0
s aotNan1.NW_018511953v1       738956 1 -   3745603 C
i aotNan1.NW_018511953v1    C 0 I 15
s otoGar3.GL873530            6763747 1 -  36342412 T
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55178448 1 + 124595110 T
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 48423 1 -  40214260 T
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              40749 1 -   2180720 T
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 922728 56 - 119751181 I
e proCoq1.NW_012149419v1       646257 391 -   2566024 I
e cebCap1.NW_016107979v1       293648 25 -   1024465 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=58748.000000
s hg38.chr15_KI270850v1_alt    191042 14 +    430880 GTTGATTGTTTTAA-
s panTro5.chr15              18000657 14 -  83230942 ATCGATTGTTTTAA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226969 14 -  99763055 ATCGATTGTTTTAA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289642 14 +    378907 GTTGATTGTTTTAA-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145182 14 + 121039945 ATCGATTGTTTTAA-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356110 14 + 169600520 ATTGATTGTTTTAA-
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351958 14 -   6271500 CTTGATTGTTTTAA-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1811824 14 -   1987038 ATTGATTGTTTTAA-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064700 14 -  24206276 CTTGATTGTTATAA-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298095 14 -   1458659 CTTGATTGTTATAA-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471664 14 -   9444221 CTTGATTGTTTTCA-
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226069 11 -   2853901 ---GATTTTTTTTT-
i calJac3.chrY              C 0 I 2
s saiBol1.JH378276             507823 11 -   3282555 ---GATTTTTTTTT-
i saiBol1.JH378276          C 0 I 3
s otoGar3.GL873530            6763748 10 -  36342412 ----CTTGATTTGA-
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55178449 12 + 124595110 --CTTTAGCTTTAA-
i mm10.chr9                 C 0 I 1
s canFam3.chr30                 48424 10 -  40214260 ----CTTGATTTTA-
i canFam3.chr30             C 0 I 1
s dasNov3.JH569975              40750 11 -   2180720 ----TTTGGTTTCAA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 922728 56 - 119751181 I
e proCoq1.NW_012149419v1       646257 391 -   2566024 I
e aotNan1.NW_018511953v1       738957 15 -   3745603 I
e cebCap1.NW_016107979v1       293648 25 -   1024465 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=-6934.000000
s hg38.chr15_KI270850v1_alt    191056 5 +    430880 AAGA-T
s panTro5.chr15              18000671 6 -  83230942 AAGATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226983 5 -  99763055 AAGA-T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289656 5 +    378907 AAGA-T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145196 5 + 121039945 AAGG-T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356124 4 + 169600520 AAGA--
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351972 5 -   6271500 AAGA-T
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1811838 4 -   1987038 AAGA--
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064714 5 -  24206276 AAGA-T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298109 5 -   1458659 AAGA-T
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471678 5 -   9444221 AAGA-T
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226082 3 -   2853901 -AGT--
i calJac3.chrY              I 2 I 1
s saiBol1.JH378276             507837 4 -   3282555 AAAT--
i saiBol1.JH378276          I 3 I 1
s aotNan1.NW_018511953v1       738972 4 -   3745603 AAGT--
i aotNan1.NW_018511953v1    I 15 I 1
s otoGar3.GL873530            6763759 4 -  36342412 AATA--
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  55178462 5 + 124595110 AAAA-T
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 48435 4 -  40214260 AACC--
i canFam3.chr30             I 1 C 0
s dasNov3.JH569975              40761 5 -   2180720 AACT-T
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 922728 56 - 119751181 I
e proCoq1.NW_012149419v1       646257 391 -   2566024 I
e cebCap1.NW_016107979v1       293648 25 -   1024465 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=9732.000000
s hg38.chr15_KI270850v1_alt    191061 1 +    430880 T
s panTro5.chr15              18000677 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226988 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289661 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145201 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356128 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351977 1 -   6271500 T
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1811842 1 -   1987038 C
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064719 1 -  24206276 T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298114 1 -   1458659 T
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471683 1 -   9444221 T
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226086 1 -   2853901 T
i calJac3.chrY              I 1 C 0
s saiBol1.JH378276             507842 1 -   3282555 C
i saiBol1.JH378276          I 1 C 0
s cebCap1.NW_016107979v1       293673 1 -   1024465 t
i cebCap1.NW_016107979v1    I 25 C 0
s aotNan1.NW_018511953v1       738977 1 -   3745603 T
i aotNan1.NW_018511953v1    I 1 C 0
s otoGar3.GL873530            6763763 1 -  36342412 T
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55178467 1 + 124595110 T
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 48439 1 -  40214260 T
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              40766 1 -   2180720 T
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 922728 56 - 119751181 I
e proCoq1.NW_012149419v1       646257 391 -   2566024 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=338473.000000
s hg38.chr15_KI270850v1_alt    191062 38 +    430880 --TTTTTCTGTTTGGGGTC-TTATAATTA-ATTTAG---GCTTTC--
s panTro5.chr15              18000678 38 -  83230942 --TTTTTCTGTTTGAGGTC-TTATAATTA-ATTTAG---GCTTTC--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17226989 38 -  99763055 --TTTTTCTGTTTGAGGTC-TTATAATTA-ATTTAG---GCTTTC--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289662 38 +    378907 --TTTTTCTGTTTGAGGTC-TTATAATTA-ATTTAG---GCTTTC--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145202 38 + 121039945 --TTTTTCTGTTTGGGGTC-TTATAATTA-ATTTAG---GCTTTC--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356129 34 + 169600520 --TTTTTCTGTTTGGGGTC-TTA----TA-ATTTAG---ACTTTC--
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5351978 38 -   6271500 --TTTTTCTGTTTGGGATC-TTATAATTA-ATTTAG---GATTCC--
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1811843 34 -   1987038 --TTTTTCTGTTTGGGGTC-TTA----TA-ATTTAG---ACTTTC--
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064720 38 -  24206276 --TTTTTCTGTTTGGGGTC-TTATAATTA-ATTTAG---GCTTTC--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298115 38 -   1458659 --TTTTTCTGTTTGGGATC-TTATGATTA-ATTTAG---GCTTTC--
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471684 38 -   9444221 --TTTTTCTGTTTGGGGTC-TTATAATTA-ATTTAG---GCTTTC--
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226087 38 -   2853901 --TTTTTCTGTTTTGGATC-TTATAATTA-ATATAT---GCTTTT--
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507843 38 -   3282555 --TTTCTCTGTTTTGGATC-TTATAATTA-ATACAT---GCTTTT--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293674 38 -   1024465 --tttttctgttttGGATC-TTGTAATTA-ATATAT---GCTTTT--
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       738978 38 -   3745603 --TTTTTCTGTTTTGGATC-TTATAATTA-ATATAT---GCTTTT--
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 922784 38 - 119751181 --TTTTTCTATTTGGGATC-TTAGAATTA-ATTCAG---GCTTTT--
i micMur3.chr3              I 56 I 5
s otoGar3.GL873530            6763764 27 -  36342412 --TTTTTCTGTTT-GAATC-TTAGAATTA-TT---------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55178468 39 + 124595110 --GTTTTTTGTTTTGAATC-TTATAATTATATTCAG---ACTTTT--
i mm10.chr9                 C 0 I 1
s canFam3.chr30                 48440 10 -  40214260 --TCTTACTGTT-----------------------------------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              40767 46 -   2180720 TTTTTTTCTGGTTTGGATCTTTAGAATTA-ATTCAGATTGATTTTTT
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       646257 391 -   2566024 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=337739.000000
s hg38.chr15_KI270850v1_alt    191100 32 +    430880 ATTTTCTTGGTTTG--GAAATTATTA--ATCTAAAA
s panTro5.chr15              18000716 32 -  83230942 ATTTTCTTGGTCTG--GAAATTATTA--ATCTAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227027 32 -  99763055 ATTTTCTTGGTCTG--GAAATTATTA--ATCTAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289700 32 +    378907 ATTTTCTTGGTTTG--GAAATTATTA--ATCTAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145240 32 + 121039945 ATTTTCTTGGTTTG--GAAATTATTA--ATGTAAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356163 32 + 169600520 ATTTTCTTGGTTTG--GAAATTATTA--ATCTAAAA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352016 32 -   6271500 ATTTTCTTAGTTTG--GAAGTTATTA--ATCTAAAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1811877 32 -   1987038 ATTTTCTTGGTTTG--GAAATTATTA--ATCTAAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064758 32 -  24206276 ATTTTCCTGGTTTG--GAATTTATTA--ATCTAAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298153 32 -   1458659 ATTTTCTTGGTTTG--GAATTTATTA--ATCTAAAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471722 32 -   9444221 ATTTTCTTGGTTTG--GAAATTATTA--ATTTAAAA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226125 32 -   2853901 ATTTTCTGGATCTG--GAAATTTTTA--ATCTAAAA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507881 32 -   3282555 ATTTTCTTGATCTG--GAAAATTTTA--ATCTAAAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293712 32 -   1024465 ATTTTCTTGATCTG--GAAAATTTTA--ATCTAAAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       739016 32 -   3745603 ATTTTCTTGATTTG--GAAATTTTTA--ATCTGAAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 922827 32 - 119751181 ATTTTCTTGATTTG--GAAATTTTTA--ATCTAAAA
i micMur3.chr3              I 5 I 33
s proCoq1.NW_012149419v1       646648 32 -   2566024 ATTTTCTTGATTTG--GAAATTTTTA--ATCTAAAA
i proCoq1.NW_012149419v1    I 391 C 0
s otoGar3.GL873530            6763791  7 -  36342412 -----------------------------TCTAAAG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55178508 34 + 124595110 CCTTATTTTGTTTGAAAAAAAAATCT--GTTTAAAA
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 48450 20 -  40214260 ----------TTTG--GAGTTTATTT---TTTAAT-
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              40813 34 -   2180720 ATTTTCTTGATTTG--GGATTTTTAAGAATCTGCAA
i dasNov3.JH569975          C 0 C 0
e macFas5.chr7              107345402 100 - 171882078 I

a score=227775.000000
s hg38.chr15_KI270850v1_alt    191132 24 +    430880 TGTACTTT--AGAGTGCTTCGGAACT
s panTro5.chr15              18000748 24 -  83230942 TGTACTTT--AGAGTGCTTCAGAACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227059 24 -  99763055 TGTACTTT--AGAGTGCTTCAGAACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289732 24 +    378907 TGTACTTT--AGAGTGCTTCGGAACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145272 24 + 121039945 TGTACTTT--AGAGTGCTTCAGAACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356195 24 + 169600520 TATACTTT--AGAGTGCTTCTGAACT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352048 24 -   6271500 TATACTTT--AGAGTGCTTCAGAACT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1811909 24 -   1987038 TATACTTT--AGAGTGCTTCTGAACT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064790 24 -  24206276 TATACTTT--AGAGGGCTTCAGAACT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298185 24 -   1458659 TATACTTT--AGAGGGCTTCAGAACT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471754 24 -   9444221 TATACTTT--AGAGTTATCCAGAACT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226157 25 -   2853901 TATACTTTT-AGAATGCTTCAGAACT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507913 25 -   3282555 TGTACTTTC-AGAATGCTTCAGAACT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293744 25 -   1024465 TATACTTTT-AGAATGCTTCAGAACT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       739048 25 -   3745603 TATACTTTT-AGAATGCTTCAGAACT
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       646680 25 -   2566024 CATACTTCT-AGAATGCTTCAGAACT
i proCoq1.NW_012149419v1    C 0 I 21
s otoGar3.GL873530            6763798 24 -  36342412 CATACTTTT-AGAATGCTTCAGAGC-
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55178542 24 + 124595110 TGTACTTTG-AGAATGGGTCAAAGC-
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 48470  7 -  40214260 TTTAttt-------------------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              40847 26 -   2180720 TATACTTTTCAGAATGCCTCATGATT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 922859 33 - 119751181 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=51736.000000
s hg38.chr15_KI270850v1_alt    191156 6 +    430880 AAAAAG
s panTro5.chr15              18000772 6 -  83230942 AAAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227083 6 -  99763055 AAAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289756 6 +    378907 AAAAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145296 6 + 121039945 AAAAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356219 6 + 169600520 AAAGAA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352072 6 -   6271500 AACAAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1811933 6 -   1987038 AAAGAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064814 6 -  24206276 AAAGAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298209 6 -   1458659 AAAGAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471778 6 -   9444221 GAAGAA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226182 6 -   2853901 AAAGAG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507938 6 -   3282555 AAAGAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293769 6 -   1024465 AAAGAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       739073 6 -   3745603 AAAGAG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6763822 4 -  36342412 --AGAA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55178566 5 + 124595110 -AAAAG
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              40873 6 -   2180720 AAGGAA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 922859 33 - 119751181 I
e proCoq1.NW_012149419v1       646705 21 -   2566024 I
e canFam3.chr30                 48477 0 -  40214260 C
e macFas5.chr7              107345402 100 - 171882078 I

a score=215241.000000
s hg38.chr15_KI270850v1_alt    191162 34 +    430880 GTAGT---GTTGTAGGC------TT-Gttt-----ttgtttg---ttttttg
s panTro5.chr15              18000778 34 -  83230942 GTAGT---GTTGTAGGC------TT-GCtt-----ttgtttg---ttttttg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227089 34 -  99763055 GTAGT---GTTGTAGGC------TT-GCtt-----ttgtttg---ttttttg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289762 34 +    378907 GTAGT---GTTGTAGGC------TT-Gttt-----ttgtttg---ttttttg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145302 34 + 121039945 GTAGT---GTTGGAGGC------TT-Gttt-----ttgttta---tttattg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356225 38 + 169600520 GTAGT---GTTGTAGGA------TT-Gtttttg-cttgtttg---ttttttg
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352078 34 -   6271500 GTAGT---GTTGTAGGC------tt-cttt-----ttgtttg---ttttctg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1811939 38 -   1987038 GTAGT---GTTGTAGGA------tt-gtttttg-cttgtttg---ttttttg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064820 34 -  24206276 GTAGT---GTTGTAAGC------tt-gttt-----ttgtttg---ttttttg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298215 40 -   1458659 GTAGT---GTTGTAAGCTTGttttt-gttt-----ttgtttt---ttttttg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471784 39 -   9444221 GTAGT---GTTGTAGGC------TT-Gttttcgttttttttt---ttttttg
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226188 37 -   2853901 GCAGT---GTTGTAGGC------TT-Gttt-----ttgtttgtttttttttg
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507944 35 -   3282555 GCAGT---GTTGTAGGC------TT-Gttt-----ttgtttg--tttttttg
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293775 36 -   1024465 GCAGT---GTTGTAGGC------TT-Gttt-----ttgtttg-ttttttttg
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       739079 32 -   3745603 GCAGT---GTTGTAGGC------TT-Gttt-----ttgt-----tttttttg
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6763826 27 -  36342412 GTAGTA--GTTGTAGGC------TT-GTT------TTGTGCA----------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 48477 28 -  40214260 ---------ttttaaga------tt-ttat-----ttattta---ttcatag
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              40879 26 -   2180720 -----GTGGTTGTGGTA------TTCGTTT-----TTTTCTG----------
i dasNov3.JH569975          C 0 I 127
e micMur3.chr3                 922859 33 - 119751181 I
e proCoq1.NW_012149419v1       646705 21 -   2566024 I
e mm10.chr9                  55178571  0 + 124595110 C
e macFas5.chr7              107345402 100 - 171882078 I

a score=712567.000000
s hg38.chr15_KI270850v1_alt    191196 108 +    430880 agacagggtttcactgtcacccaggctggag---------tgcagtagcgccggcatggctcactgtaaccttgaactcctgggttcaagcgat-------------cctcctgagt----agctgggactaca
s panTro5.chr15              18000812 108 -  83230942 agacagggtttcactgtcacccaggctggag---------tgcagtagcgccggcatggctcactgtaaccttgaactcctgggttcaagtgat-------------cctcctgagt----agctgggactaca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227123 108 -  99763055 agacagggtttcactgtcacccaggctggag---------tgcagtagcgccggcatggctcactgtaaccttgaactcctgggttcaagtgat-------------cctcctgagt----agctgggactaca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289796 108 +    378907 agacagggtttcactgtcacccaggctggag---------tgcagtagcaccagcatggctcactgtaaccttgaactcctgcgttcaagtgat-------------cctcctgagt----agctgggactaca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145336 108 + 121039945 agacagggtttcactgtcacccaggctggag---------ttcagtggcgccggcatggctcactgtaaccttgaactcctgggttcaagcgat-------------cctcctgagt----agctgggactaca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356263 100 + 169600520 agacagggtttcactgtcacccaggctggag---------tgcagtagcgcaggcacagctcactgtaaccttgaac--------tcaagtgat-------------ccttccgagt----atctgggactaca
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352112 108 -   6271500 agagagggttttactgtcacagaggctggag---------tgcagtagcgcagtcatggctcactgtaaccttgaactcccagattcaagcgat-------------cctcctgagt----agctgggactaca
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1811977 100 -   1987038 agacagggtttcactgtcacccaggctggag---------tgcagtagcgcgggcacagctcactgtaaccttgaac--------tcaagtgat-------------ccttctgagt----atctgggactaca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064854  99 -  24206276 agacagagtctta-tgtcactcaggatggag---------tgcagtagcatggtca--------tgtaaccttgaactcctgggttcaagcaat-------------cctcctgagt----agctgggactata
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298255  89 -   1458659 agacagagtctta-tgtcactcaggatggag-------------------tggtca--------tgtaaccttgaactcctgggttcaagcaat-------------cctcctgagt----agctgggactata
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7471823 108 -   9444221 aaacaggatctcactgtcacccaggctggaa---------tgcagtagcgtggtcacggctcactgcaaccttgaactcctgggttcaagcaat-------------cctcctgagt----agctggtactaca
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226225 121 -   2853901 agacagggtctcactgtcacacaggctggag---------tgtagtggtgtgataacagctcactgcaacctggaactcttgggctcaagcagtcctcccaacccagcctcccaagt----agcttggactaca
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             507979 119 -   3282555 agatagggtttcactgacacacaggctggag---------tgtagtagtgtgataacagctcactgcaacctcaaaatcttgggctcaagcaatcctccaaactcaacctcctaagt----agctgggact--a
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293811 121 -   1024465 ggacagggtctcactgtcacacaggctggag---------cgtagtagtgtgataacagctcactgcagcctcgaactcttgggctcaagcaatgctcccaactcagcctcctgagt----agctgggactaca
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       739111 121 -   3745603 agacagggtctcactgtcacacaggctggag---------tgtagtagtgtgataacagctcactgcaacctcgaactcttgggctcaagcaatcctcccaactcagcctcctgagt----agctgggactaca
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr30                 48505 105 -  40214260 agacagagaggca--------gagggagaagcaggccccatgca----------gagagcccgatgtggaactcgatcccaggaccccagggatca-----------caccctgagccaaaggcaggcactaaa
i canFam3.chr30             C 0 I 108
e micMur3.chr3                 922859  33 - 119751181 I
e proCoq1.NW_012149419v1       646705  21 -   2566024 I
e mm10.chr9                  55178571   0 + 124595110 C
e dasNov3.JH569975              40905 127 -   2180720 I
e otoGar3.GL873530            6763853   0 -  36342412 C
e macFas5.chr7              107345402 100 - 171882078 I

a score=83454.000000
s hg38.chr15_KI270850v1_alt    191304 11 +    430880 ggccggtgccc
s panTro5.chr15              18000920 11 -  83230942 ggccggtgccc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227231 11 -  99763055 ggccggtgccc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289904 11 +    378907 ggccggtgccc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145444 11 + 121039945 ggccgttgccc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356363 11 + 169600520 ggtgggtgccc
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352220 11 -   6271500 ggccagtgccc
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812077 11 -   1987038 ggtgggtgccc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064953 11 -  24206276 ggccggtgccC
i chlSab2.chr29             C 0 I 4
s manLeu1.NW_012105520v1       298344 11 -   1458659 ggccggtgccC
i manLeu1.NW_012105520v1    C 0 I 4
s colAng1.NW_012112253v1      7471931 11 -   9444221 ggcaggtgccc
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226346 11 -   2853901 ggcatgtgccc
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             508098 11 -   3282555 ggcatgtgccc
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293932 11 -   1024465 ggcgtgtgccc
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       739232 11 -   3745603 ggcatgtgccc
i aotNan1.NW_018511953v1    C 0 C 0
e micMur3.chr3                 922859 33 - 119751181 I
e proCoq1.NW_012149419v1       646705 21 -   2566024 I
e mm10.chr9                  55178571  0 + 124595110 C
e dasNov3.JH569975              40905 127 -   2180720 I
e canFam3.chr30                 48610 108 -  40214260 I
e otoGar3.GL873530            6763853  0 -  36342412 C
e macFas5.chr7              107345402 100 - 171882078 I

a score=37084.000000
s hg38.chr15_KI270850v1_alt    191315 11 +    430880 cacgtccagc--t
s panTro5.chr15              18000931 11 -  83230942 cacgtccagc--t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227242 11 -  99763055 cacgtccagc--t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289915 11 +    378907 cacgtccagc--t
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145455 11 + 121039945 catgtccagc--t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356374 11 + 169600520 cacatccagc--t
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352231 11 -   6271500 catgtccagc--t
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812088 11 -   1987038 cacatccagc--t
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7471942 11 -   9444221 cacgtccagc--t
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226357 10 -   2853901 catgtccaga---
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             508109 10 -   3282555 catgtccaga---
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       293943 11 -   1024465 catgtccagat--
i cebCap1.NW_016107979v1    C 0 I 57
s aotNan1.NW_018511953v1       739243 11 -   3745603 catgtccaga-t-
i aotNan1.NW_018511953v1    C 0 I 57
e micMur3.chr3                 922859 33 - 119751181 I
e proCoq1.NW_012149419v1       646705 21 -   2566024 I
e mm10.chr9                  55178571  0 + 124595110 C
e dasNov3.JH569975              40905 127 -   2180720 I
e canFam3.chr30                 48610 108 -  40214260 I
e otoGar3.GL873530            6763853  0 -  36342412 C
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=-4047.000000
s hg38.chr15_KI270850v1_alt    191326 28 +    430880 aattt-tt----------------ttttat-------tttt--------------ttgtagagttt
s panTro5.chr15              18000942 52 -  83230942 aattt-ttattttattttattttattttat-------tttt------attttttattttagcgttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227253 42 -  99763055 aattt-tt----------attttattttat-------tttt------attttttattttagcgttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289926 28 +    378907 aattg-tt----------------ttttat-------tttt--------------ttgtagagttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145466 29 + 121039945 aattt-tt--------------ttttttat-------ttt---------------ttgtacagttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356385 35 + 169600520 aatttatt----------------ttttattttttaattt---------------ttgtggagttt
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352242 28 -   6271500 tatttctt----------------ttttac-------tct---------------tagtagagttt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812099 35 -   1987038 aatttatt----------------ttttattttttaattt---------------ttgtggagttt
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7471953 27 -   9444221 aatgt-tc----------------ttttac-------ttt---------------ttgtagagttt
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226367 26 -   2853901 --------------------------------------tt--aaaaaaaattgttttgtagggatt
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             508119 28 -   3282555 --------------------------------------tttaaaaaaaaaaaaaattgtagagatt
i saiBol1.JH378276          C 0 C 0
e micMur3.chr3                 922859 33 - 119751181 I
e proCoq1.NW_012149419v1       646705 21 -   2566024 I
e aotNan1.NW_018511953v1       739254 57 -   3745603 I
e mm10.chr9                  55178571  0 + 124595110 C
e dasNov3.JH569975              40905 127 -   2180720 I
e canFam3.chr30                 48610 108 -  40214260 I
e cebCap1.NW_016107979v1       293954 57 -   1024465 I
e otoGar3.GL873530            6763853  0 -  36342412 C
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=25092.000000
s hg38.chr15_KI270850v1_alt    191354 5 +    430880 gagtc
s panTro5.chr15              18000994 5 -  83230942 gagtc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227295 5 -  99763055 gagtc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289954 5 +    378907 gagtc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145495 5 + 121039945 gagtc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356420 5 + 169600520 gagtc
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352270 5 -   6271500 gagtc
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812134 5 -   1987038 gagtc
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7471980 5 -   9444221 gagtc
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226393 5 -   2853901 ggttc
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             508147 5 -   3282555 ggttc
i saiBol1.JH378276          C 0 C 0
s mm10.chr9                  55178571 5 + 124595110 GAGTC
i mm10.chr9                 C 0 C 0
e micMur3.chr3                 922859 33 - 119751181 I
e proCoq1.NW_012149419v1       646705 21 -   2566024 I
e aotNan1.NW_018511953v1       739254 57 -   3745603 I
e dasNov3.JH569975              40905 127 -   2180720 I
e canFam3.chr30                 48610 108 -  40214260 I
e cebCap1.NW_016107979v1       293954 57 -   1024465 I
e otoGar3.GL873530            6763853 0 -  36342412 C
e manLeu1.NW_012105520v1       298355 4 -   1458659 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=109160.000000
s hg38.chr15_KI270850v1_alt    191359 24 +    430880 tcactctgttgcccaggctggtct
s panTro5.chr15              18000999 24 -  83230942 tcactctgttgcccaggctggtct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227300 24 -  99763055 tcactctgttgcccaggctggtct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289959 24 +    378907 tcactctgttgcccaggctggtct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145500 24 + 121039945 ttactctgttgcccaggctggtct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356425 24 + 169600520 tcgctctgttgcccaggctggtct
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352275 24 -   6271500 tcgctctgttacccaggctggtct
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812139 24 -   1987038 tcgctctgttgcccaggctggtct
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7471985 24 -   9444221 tcgttctatcgcccaggctggttt
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226398 24 -   2853901 ttgctctgttgtccaggctgatct
i calJac3.chrY              C 0 I 2
s saiBol1.JH378276             508152 24 -   3282555 ttgctctgttgtccaggctgatct
i saiBol1.JH378276          C 0 I 2
e micMur3.chr3                 922859 33 - 119751181 I
e proCoq1.NW_012149419v1       646705 21 -   2566024 I
e aotNan1.NW_018511953v1       739254 57 -   3745603 I
e mm10.chr9                  55178576  0 + 124595110 C
e dasNov3.JH569975              40905 127 -   2180720 I
e canFam3.chr30                 48610 108 -  40214260 I
e cebCap1.NW_016107979v1       293954 57 -   1024465 I
e otoGar3.GL873530            6763853  0 -  36342412 C
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=475682.000000
s hg38.chr15_KI270850v1_alt    191383 75 +    430880 tgaactcctggcctcaagtgatccaccacctcggcctcccaaagtgctgggattacaggtgtgtgccactgtgcc
s panTro5.chr15              18001023 75 -  83230942 tgaactcctgacctcaagtgatccaccacctcagcctcccaaagtgctgggattacaggtgtgtgccactgtgcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227324 75 -  99763055 tgaactcctgacctcaagtgatccaccacctcagcctcccaaagtgctgggattacaggtgtgtgccactgtgcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       289983 75 +    378907 tgaactcctggcctcaagtgatccaccacctcggtctcccaaagtgctgggattacaggtgtgtgccactgtgcc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145524 75 + 121039945 tgaactcctggcctcaagtgatccaccacctcggcctcccaaagtgctgggattacaggtgtgtgtcactgtgcc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356449 75 + 169600520 tgaagtcctggcctcaggtgatccaccacctcggcctcccaaagtgctgggattacaagcatgtgccactgtgcc
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352299 75 -   6271500 tgaactcctggcctcaagtgatccaccaccttggcctcccaaagtgctgggattacaggtatgtgccactgtgac
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812163 75 -   1987038 tgaagtcctggcctcaggtgatccaccacctcggcctcccaaagtgctgggattacaagcatgtgccactgtgcc
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472009 75 -   9444221 tgaactcctggcctcaagtgatccaccacctcggcctcccaaaatgctgggattgcaggtatatgccactgtacc
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226424 75 -   2853901 tgaactcctgacctcaagcgatccactacctcagcctcccaaagtgctgggattagaggcctgtattatcatgtc
i calJac3.chrY              I 2 C 0
s saiBol1.JH378276             508178 75 -   3282555 tgagctcctgacctcaagcgatccaccacctcagcctcccaaagtgctgggattacaggcccgtgtcatcgtttc
i saiBol1.JH378276          I 2 C 0
s cebCap1.NW_016107979v1       294011 75 -   1024465 tgaactcctgatctcaagtgatccaccacctcagcctcccaaagtgctgggattacaggcctgtgtcatcgtgtc
i cebCap1.NW_016107979v1    I 57 C 0
s aotNan1.NW_018511953v1       739311 75 -   3745603 tgaactcctgacctcaagcgatccaccacctcagcctcccaaagtgctgggattacaggcctgtgtcatcgtgtc
i aotNan1.NW_018511953v1    I 57 C 0
e micMur3.chr3                 922859 33 - 119751181 I
e proCoq1.NW_012149419v1       646705 21 -   2566024 I
e mm10.chr9                  55178576  0 + 124595110 C
e dasNov3.JH569975              40905 127 -   2180720 I
e canFam3.chr30                 48610 108 -  40214260 I
e otoGar3.GL873530            6763853  0 -  36342412 C
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=29393.000000
s hg38.chr15_KI270850v1_alt    191458 4 +    430880 tggc
s panTro5.chr15              18001098 4 -  83230942 tggc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227399 4 -  99763055 tggc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290058 4 +    378907 tggc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145599 4 + 121039945 tggc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356524 4 + 169600520 tggc
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352374 4 -   6271500 tggc
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812238 4 -   1987038 tggc
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472084 4 -   9444221 tggc
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226499 4 -   2853901 tggc
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             508253 4 -   3282555 tggc
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       294086 4 -   1024465 tggc
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       739386 4 -   3745603 aggc
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr30                 48718 4 -  40214260 TAGT
i canFam3.chr30             I 108 C 0
e micMur3.chr3                 922859 33 - 119751181 I
e proCoq1.NW_012149419v1       646705 21 -   2566024 I
e mm10.chr9                  55178576 0 + 124595110 C
e dasNov3.JH569975              40905 127 -   2180720 I
e otoGar3.GL873530            6763853 0 -  36342412 C
e manLeu1.NW_012105520v1       298355 4 -   1458659 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=40537.000000
s hg38.chr15_KI270850v1_alt    191462 5 +    430880 TGTAG
s panTro5.chr15              18001102 5 -  83230942 TGTAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227403 5 -  99763055 TGTAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290062 5 +    378907 TGTAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145603 5 + 121039945 TGTAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356528 5 + 169600520 TGTAG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352378 5 -   6271500 TGTAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812242 5 -   1987038 TGTAG
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472088 5 -   9444221 TGTAG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226503 5 -   2853901 TGTAG
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             508257 5 -   3282555 TGTAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       294090 5 -   1024465 TGTAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       739390 5 -   3745603 TGTAG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 922892 5 - 119751181 TGTAG
i micMur3.chr3              I 33 C 0
s canFam3.chr30                 48722 4 -  40214260 TGTG-
i canFam3.chr30             C 0 C 0
e proCoq1.NW_012149419v1       646705 21 -   2566024 I
e mm10.chr9                  55178576 0 + 124595110 C
e dasNov3.JH569975              40905 127 -   2180720 I
e otoGar3.GL873530            6763853 0 -  36342412 C
e manLeu1.NW_012105520v1       298355 4 -   1458659 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=79562.000000
s hg38.chr15_KI270850v1_alt    191467 9 +    430880 GCTTGTTTT
s panTro5.chr15              18001107 9 -  83230942 GCTTATTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227408 9 -  99763055 GCTTATTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290067 9 +    378907 GCTTGTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145608 9 + 121039945 GCTTGTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356533 9 + 169600520 GCTTGTTTT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352383 9 -   6271500 GCTTGTTTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812247 9 -   1987038 GCTTGTTTT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472093 9 -   9444221 GCTTGTTTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226508 9 -   2853901 GATTGTTTT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             508262 9 -   3282555 GATTGTTTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       294095 9 -   1024465 GATTGTTTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       739395 9 -   3745603 GATTATTTT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 922897 9 - 119751181 GCTTGTTTT
i micMur3.chr3              C 0 C 0
s mm10.chr9                  55178576 9 + 124595110 ATTTGTTTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 48726 9 -  40214260 GTTTGTTCT
i canFam3.chr30             C 0 C 0
e proCoq1.NW_012149419v1       646705 21 -   2566024 I
e dasNov3.JH569975              40905 127 -   2180720 I
e otoGar3.GL873530            6763853 0 -  36342412 C
e manLeu1.NW_012105520v1       298355 4 -   1458659 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=34085.000000
s hg38.chr15_KI270850v1_alt    191476 4 +    430880 ATGA
s panTro5.chr15              18001116 4 -  83230942 ATGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227417 4 -  99763055 ATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290076 4 +    378907 ATGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145617 4 + 121039945 ATGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356542 4 + 169600520 ATGA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352392 4 -   6271500 ATGA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812256 4 -   1987038 ATGA
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472102 4 -   9444221 ATGA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226517 4 -   2853901 ATGA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             508271 4 -   3282555 ATGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       294104 4 -   1024465 ATGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       739404 4 -   3745603 ATGA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 922906 4 - 119751181 GTGT
i micMur3.chr3              C 0 C 0
s mm10.chr9                  55178585 3 + 124595110 GTG-
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 48735 4 -  40214260 GTGA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              41032 4 -   2180720 ATGA
i dasNov3.JH569975          I 127 I 1
e proCoq1.NW_012149419v1       646705 21 -   2566024 I
e otoGar3.GL873530            6763853 0 -  36342412 C
e manLeu1.NW_012105520v1       298355 4 -   1458659 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=5319.000000
s hg38.chr15_KI270850v1_alt    191480 1 +    430880 G
s panTro5.chr15              18001120 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227421 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290080 1 +    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145621 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356546 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352396 1 -   6271500 G
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812260 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472106 1 -   9444221 G
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226521 1 -   2853901 G
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             508275 1 -   3282555 G
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       294108 1 -   1024465 G
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       739408 1 -   3745603 G
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 922910 1 - 119751181 G
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       646726 1 -   2566024 G
i proCoq1.NW_012149419v1    I 21 C 0
s canFam3.chr30                 48739 1 -  40214260 G
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              41037 1 -   2180720 A
i dasNov3.JH569975          I 1 C 0
e mm10.chr9                  55178588 0 + 124595110 C
e otoGar3.GL873530            6763853 0 -  36342412 C
e manLeu1.NW_012105520v1       298355 4 -   1458659 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=371535.000000
s hg38.chr15_KI270850v1_alt    191481 42 +    430880 TCTGGGAGTAAAATACTTCTTAAAATTGTCCAA-------------TTAGGATGA
s panTro5.chr15              18001121 42 -  83230942 TCTGGGAGTAAAATACTTCTTAAAATTGTCCAA-------------TTAGAATGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227422 42 -  99763055 TCTGGGAGTAAAATACTTCTTAAAATTGTCCAA-------------TTAGAATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290081 42 +    378907 TCTGGGAGTAAAATGCTTCTTAAAATTGTCCAA-------------TTAGGATGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145622 42 + 121039945 TCTGGGCGTAAAATACTTTTTAAAATTGTCCAA-------------TTAGGATGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356547 42 + 169600520 TCTGGGAGTAAAATACTTCTTAAAATTGTCCAA-------------GTAGAATGA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352397 42 -   6271500 TCTGGGAGTAAAATACTTCTTAAAATTGTCCAG-------------TTACAATGA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812261 42 -   1987038 TCTGGGAGTAAAATACTTCTTAAAATTGTCCAA-------------GTAGAATAA
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472107 42 -   9444221 TCTGGGGGTAAAATACTTCTTAAAATCATCCAG-------------TTAGAATGG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226522 36 -   2853901 TATGGGAGTAAAATGATCTTTAATATTGTCC-------------------AGTTA
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             508276 42 -   3282555 TCTGAGAGTAAAATGATCTTTAAAATTGTCCAC-------------TTAGAATTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       294109 41 -   1024465 TCTGGGAGTAAAATGATCTTTAAAATTGTCC-G-------------TTAGAATGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       739409 42 -   3745603 TCTGGGAGTAAAATGATCTTTAAAATTGTCCAG-------------TTAGAATTA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 922911 42 - 119751181 TCTGGGAGTAAAGTAGTTCTTAAAATTGTCCAA-------------TTAGAATGA
i micMur3.chr3              C 0 I 15
s proCoq1.NW_012149419v1       646727 42 -   2566024 TCTGAGAGTAAAATAGTTCTTAAAATTGTCCAA-------------TTAGAATGA
i proCoq1.NW_012149419v1    C 0 I 17
s otoGar3.GL873530            6763853 55 -  36342412 TCTGGAAGTAAGGTGGGTCTTAAAATTATCCCATTCTATCCACTCTTTAGGGTGG
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55178588 42 + 124595110 TCCAGGAGTAGAATAACTCTTAAAATTCTTTAA-------------TCGGAGCGA
i mm10.chr9                 C 0 I 13
s canFam3.chr30                 48740 42 -  40214260 TCTGGGCACAAAATAATTCTTAACATTGTCCAA-------------CTTGTATGG
i canFam3.chr30             C 0 I 13
s dasNov3.JH569975              41038 21 -   2180720 TTTGGGGGTCAGATTTTTTTT----------------------------------
i dasNov3.JH569975          C 0 C 0
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=46070.000000
s hg38.chr15_KI270850v1_alt    191523 8 +    430880 GAGTCTGT
s panTro5.chr15              18001163 8 -  83230942 AAGTCTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227464 8 -  99763055 AAGTCTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290123 8 +    378907 GAGTCTGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145664 8 + 121039945 GAGTCTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356589 8 + 169600520 GAGTTTGT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352439 8 -   6271500 GAGTTTGT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812303 8 -   1987038 GAGTTTGT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472149 8 -   9444221 GAGTTTGT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226558 8 -   2853901 GAGTTTGT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             508318 8 -   3282555 GAGTTTGT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       294150 8 -   1024465 GGGTTTGT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       739451 8 -   3745603 GAGTTTGT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6763909 3 -  36342412 GAG-----
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  55178643 5 + 124595110 ---GCTGT
i mm10.chr9                 I 13 I 4
s canFam3.chr30                 48795 8 -  40214260 GAGCTTGT
i canFam3.chr30             I 13 I 1
s dasNov3.JH569975              41059 2 -   2180720 ----TT--
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 922953 15 - 119751181 I
e proCoq1.NW_012149419v1       646769 17 -   2566024 I
e manLeu1.NW_012105520v1       298355 4 -   1458659 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=650577.000000
s hg38.chr15_KI270850v1_alt    191531 53 +    430880 TTTAATGTTTTTATGCAGTTTAGCTTAGGTGGAATAA--ACTGCATGAAAACATT
s panTro5.chr15              18001171 53 -  83230942 TTTAATGTTTTTATGCAGTTTAGCTTAGGTGGAATAA--ACTGCATGAAAACATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227472 53 -  99763055 TTTAATGTTTTTATGCAGTTTAGCTTAGGTGGAATAA--ACTGCATGAAAACATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290131 53 +    378907 TTTAATGTTTTTATGCAGTTTAGCTTAGGTGGAATAA--ACTGCATGAAAACATT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145672 53 + 121039945 TTTAATGTTTTTATGCAGTTTAGCTTGGGTGGAATAA--ACTGCATGAAGACATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356597 53 + 169600520 TTTAATGTTTTTATGCAGTTTATTTTAGGTGGAATAA--ACTGCATGAAAACATC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352447 53 -   6271500 TTTAATGTTTTTATGCAGTTTGGCTTAGGTGGAATAA--ACTTCATGGAAACATT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812311 53 -   1987038 TTTAATGTTTTTATGCAGTTTATTTTAGGTGGAATAA--ACTGCATGAAAACATC
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472157 53 -   9444221 TTTAATGTTTTTATGCAGTTTAGCTGAGGTGGAATAA--GCTGCATGAAAACATT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226566 53 -   2853901 TTTAATGTTTTTATGCAGTTTAGCTTAGGTGGAATAA--ACTGCATGAAAACATT
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             508326 53 -   3282555 TTCAGTGTTTTTATGCAGTTTAGCTTAGGTGGAATAA--ACTGCATGAAAACATT
i saiBol1.JH378276          C 0 I 300
s cebCap1.NW_016107979v1       294158 53 -   1024465 TTTAATGTTTTTATGCAGTTTAGCTTAGGCGGAATAA--ACTGCATGAAAACATT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       739459 53 -   3745603 TTTAATGTTTTTATGCAGTTTAGCTTAGGTGGAATAC--ACTGCATGAAAACATT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 922968 53 - 119751181 TTTAATGTTTTCTCGCAGTTTAACTTAGGTGGAATGT--ACTGCATGAAAACATT
i micMur3.chr3              I 15 C 0
s proCoq1.NW_012149419v1       646786 53 -   2566024 TTTAATGTTTTCTTGCAGTTTAACTTAGGTGGAATGT--ACTGCATGGAAACATT
i proCoq1.NW_012149419v1    I 17 C 0
s otoGar3.GL873530            6763912 49 -  36342412 TTTAATGTTT----GAGTTTTAACTTAGATAGAATAT--ACTGCATGAAAACATA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55178652 53 + 124595110 TTTACGGTTTTCATGAAGTTTAATTTAGGAGGAACAA--ATTGCATGAGAAGATT
i mm10.chr9                 I 4 C 0
s canFam3.chr30                 48804 53 -  40214260 TTTAACATTTACGTGCAGTGTAACTTAGGTAGGATAA--ACTGCAGGAAAACGTT
i canFam3.chr30             I 1 C 0
s dasNov3.JH569975              41061 55 -   2180720 TTTAATGCTTTCAAATAGTTTAACTTAGATGGAGTAATCTCTGCATGAAAACATT
i dasNov3.JH569975          C 0 C 0
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=203170.000000
s hg38.chr15_KI270850v1_alt    191584 18 +    430880 AAACCTTTTCCA---TGGGTC
s panTro5.chr15              18001224 18 -  83230942 AAACCTTTTCCA---TAGGTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227525 18 -  99763055 AAACCTTTTCCA---TAGGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290184 18 +    378907 AAACCTTTTCCA---TGGGTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145725 18 + 121039945 AAACCTTTTCTG---TGGGTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356650 18 + 169600520 AAACCTTTTCCG---TGTGTC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352500 18 -   6271500 AAACCTTTTCCA---TGGGTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812364 18 -   1987038 AAACCTTTTCCG---TGTGTC
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472210 18 -   9444221 AAACCTTTTCCG---TGGGTC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226619 18 -   2853901 AAACCTTTCCCA---TGGGTC
i calJac3.chrY              C 0 I 12
s saiBol1.JH378276             508679 18 -   3282555 aaaCCTTTTCCA---TGGGTC
i saiBol1.JH378276          I 300 I 12
s cebCap1.NW_016107979v1       294211 18 -   1024465 AAACCTCTTCCA---TGTGTC
i cebCap1.NW_016107979v1    C 0 I 12
s aotNan1.NW_018511953v1       739512 18 -   3745603 AAACCTTTTCCA---TGGGTC
i aotNan1.NW_018511953v1    C 0 I 12
s micMur3.chr3                 923021 18 - 119751181 AAACTTTTTCCA---TGGGTC
i micMur3.chr3              C 0 I 69
s proCoq1.NW_012149419v1       646839 18 -   2566024 GAACTTTTTCCA---GGGGTC
i proCoq1.NW_012149419v1    C 0 I 69
s otoGar3.GL873530            6763961 18 -  36342412 AAACTTTTCCCC---TGGATC
i otoGar3.GL873530          C 0 I 42
s mm10.chr9                  55178705 20 + 124595110 -AAGCTTCCCCAGCCTGGCTG
i mm10.chr9                 C 0 I 5
s canFam3.chr30                 48857 18 -  40214260 AAACCTTTCCCG---TGGGTT
i canFam3.chr30             C 0 I 12
s dasNov3.JH569975              41116 18 -   2180720 CAACATTTTTCA---TGGGTC
i dasNov3.JH569975          C 0 I 13
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=198801.000000
s hg38.chr15_KI270850v1_alt    191602 36 +    430880 AGGCAGCCATTGTAC--T---------AAAGTTCATGAACCCTTTCA--
s panTro5.chr15              18001242 36 -  83230942 AGGCAGCCATTGTAC--T---------AAAGTTCATGAACCCTTTCA--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227543 36 -  99763055 AGGCAGCCATTGTAC--T---------AAAGTTCATGAACCCTTTCA--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290202 36 +    378907 AGGCAGCCATTGTAC--T---------AAAGTTCATGAACCCTTTCA--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145743 36 + 121039945 AGGCAGCCATTGTAG--T---------AAAGTTCATGAACCCTTTCA--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356668 36 + 169600520 AGGCGGCCATTGTAC--T---------AAGGTTCACGAACCCTTTCA--
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352518 36 -   6271500 AGACATCCATTGTAC--T---------AAGATTCATGAACCGTTTCA--
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812382 36 -   1987038 AGGCGGCCATTGTAC--T---------AAGGTTCACGAACCCTTTCA--
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472228 35 -   9444221 AGGCAGCCATTGTA---T---------AAAGATCATGTACCCTTTCA--
i colAng1.NW_012112253v1    C 0 I 1
s calJac3.chrY                 226649 35 -   2853901 AAGCAGCCATTGTAC--T---------AAAGTTCATGAACCTTTTC---
i calJac3.chrY              I 12 C 0
s saiBol1.JH378276             508709 37 -   3282555 AAGCAGCCATTGTACTAT---------AAAGTTCATGAACCTTTTC---
i saiBol1.JH378276          I 12 C 0
s cebCap1.NW_016107979v1       294241 35 -   1024465 AAGCAGCCATTGTAC--T---------AAAGTTCATGAACCTTTTC---
i cebCap1.NW_016107979v1    I 12 C 0
s aotNan1.NW_018511953v1       739542 35 -   3745603 AAGCAGCCATTGGAC--T---------AAAGTTCATGAACCTTTTC---
i aotNan1.NW_018511953v1    I 12 C 0
s mm10.chr9                  55178730 34 + 124595110 AAACAGACTTTGTGT--T---------CAGTTTCTCTGCTTTTCT----
i mm10.chr9                 I 5 C 0
s canFam3.chr30                 48887 36 -  40214260 AGGTTGACATTCTAC--TC--------AGAGTTTACGTTCTTCTCA---
i canFam3.chr30             I 12 C 0
s dasNov3.JH569975              41147 47 -   2180720 AAGTAGATATTATAC--TTGTCCTCAAAGAGTTTATGTATCTTATTCTC
i dasNov3.JH569975          I 13 C 0
e micMur3.chr3                 923039 69 - 119751181 I
e proCoq1.NW_012149419v1       646857 69 -   2566024 I
e otoGar3.GL873530            6763979 42 -  36342412 I
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=126764.000000
s hg38.chr15_KI270850v1_alt    191638 19 +    430880 TTTTCCCTTGACAAGATAA
s panTro5.chr15              18001278 19 -  83230942 TTTTCCCTTCACAAGATAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227579 19 -  99763055 TTTTCCCTTCACAAGATAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290238 19 +    378907 TTTTCCCTTGACAAGATAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145779 19 + 121039945 TTTTCCCTTCACAAGATAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356704 19 + 169600520 TTTTCCCTTCACAAGATAA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352554 19 -   6271500 TTTCCCATTCACAAGTTAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812418 19 -   1987038 TTTTCCCTTCACAAGATAA
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472264 19 -   9444221 TTTTCCCCTCACAAGATAA
i colAng1.NW_012112253v1    I 1 C 0
s calJac3.chrY                 226684 16 -   2853901 TTTTCCCC-CACAAGAT--
i calJac3.chrY              C 0 C 0
s saiBol1.JH378276             508746 17 -   3282555 TTTTCCCCTCACAAGAT--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       294276 16 -   1024465 TTTCCCCT-CACAAGAT--
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       739577 17 -   3745603 TTTTACCCTCACAAGAT--
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6764021 19 -  36342412 TTGTACCTTCATAAGATGA
i otoGar3.GL873530          I 42 C 0
s mm10.chr9                  55178764 19 + 124595110 TTTACTTCTCATGAGATTG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 48923 19 -  40214260 TTTTCCCTTCACAAGATAA
i canFam3.chr30             C 0 I 2
s dasNov3.JH569975              41194 19 -   2180720 TGTTTATCTCACAAGATTA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 923039 69 - 119751181 I
e proCoq1.NW_012149419v1       646857 69 -   2566024 I
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=1558316.000000
s hg38.chr15_KI270850v1_alt    191657 169 +    430880 TAAACAAGGGACCGCAACTTTGAGGGAAATCTAGAAAGGTAGGAGACTGGACTTTGG---AGTTGTCAGATTAGGACAGGTGAAAAGCAGATATTCTAGGCTCCTAAAATAATGTGG--GAACAGGCCCAGAGCAACT-TTGGACATGGTGTG-TTTGGGTGCATTGGA----TG-----CTTTT
s panTro5.chr15              18001297 173 -  83230942 AAAACAAGGGACCGCAACTCTGAGGGAAATCTAGAAAGGTAGGAGACTGGACTTTGG---AGTTGTCAGATTAAGACAGGTGAAAAGCAGATATTCTAGGCTCCTAAAATAATGT-G--GAACAGGCCCAGAGCAACT-TTGGACATGGTGTG-TTTGGGTGCACTGGA----TGCTTTTCTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227598 174 -  99763055 AAAACAAGGGACCGCAACTCTGAGGGAAATCTAGAAAGGTAGGAGACTGGACTTTGG---AGTTGTCAGATTAAGACAGGTGAAAAGCAGATATTCTAGGCTCCTAAAATAATGTGG--GAACAGGCCCAGAGCAACT-TTGGACATGGTGTG-TTTGGGTGCACTGGA----TGCTTTTCTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290257 174 +    378907 AAAACAAGGGACCGCAACTTTGAGGGAAATCTAGAAAGGTAGGAGACTGGACTTTGG---AGTTGTCAGATTAGGACAGGTGAAAAGCTGATATTCTAGGCTCCTAAAATAACGTGG--GAACAGGCCCAGAGCAACT-TTGGACATGGTGTG-TTTGGGTGCACTGGA----TGCTTTTCTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145798 174 + 121039945 AAAACAAGGGACCGCAAGTTTGAGGGAAATCTAGAAAGGTAGGAGACTGGACTTTGG---AGTTGTCAGATTAGGACAGGTGAGAAGCAGATATTCTAGGCTCCTGAAATAATGTGG--GAACAGGCCCAGAGCAACT-TTGGATATGGTGTG-TTTGGGTGCATTGGA----TGCTTTTCTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356723 174 + 169600520 TAAACACGTGACTGCAACTTTGAGAGAAATCTAGAAaggcaggagactggactttgg---agatgtcagattaggacaggtgaaaagcagatattctaggctcctaaaataacgtgg--aaacaggcccagaacaacc-ttggacctggtgtg-tttgggttcattgga----tatgtttctttt
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352573 174 -   6271500 TAAACAAGGAACTGCCCCTTTGAGGGAAATCTACAAAGGTAAGAGACTGAACTTTGG---AGACGTCAGATTAGGCCAGGTGAAAAGCAGATATTCTAGGCTCCTAAAATAATGTGG--GAACAGGCCCAGAGCAATT-TTGGACATGATGTG-TTTGGATGTATTGGA----TGCTTTTCTTTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812437 174 -   1987038 TAAACACGTGACTGCAACTTTGAGAGAAATCTAGAAAGGCAGGAGACTGGACTTTGG---AGATGTCAGATTAGGACAGGTGAAAAGCAGATATTCTAGGCTCCTAAAATAACGTGG--AAACAGGCCCAGAACAACC-TTGGACCTGGTGGG-TTTGGATTCATTGGA----TATGTTTCTTTT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472283 174 -   9444221 TAAACAAGGGACCACAACTTTGAGGGAAAGCTAGAAAGGTAAGAGACTGGACTTCAG---AAGTGTCAGATTAGGACAGGTGAAAAGCAGATATTCTAGGCTCCTAAAATAACGTGG--GAACAGGCCCAGAACAATC-TTGGACATGCTGTG-TTTGGGTGCATTGGA----TGCCTTTCTTTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chrY                 226700 168 -   2853901 -ATACAAGGCACCATGACATTGAGGGAAATCTAGAAAGGTAGGAGATGGAACTTTGG---AGATCTAAGATTAGGACACGTGAAAAGCAGAGATTTTAGGCTCCTGAAATAACATGG--GAACAGGCCCAGAACAACC-TTGGACATGGTGTG-TTTGGATGCATTgga----tgctttt-----
i calJac3.chrY              C 0 N 0
s saiBol1.JH378276             508763 168 -   3282555 -AAACAAGGAACCACAACATCGAGGCAAATCTAGAAAGGGAGGAGCCGGAACTTTGG---AGATGTCAGATTGGGTCAGGTGAAAAGCAGAGATTCTAGGCTCCTAAAATAATGTGG--GAACAGGCCCAGAACAACC-CTGGACATGGTGCG-TTTGGATGCAATGGC----TGCTTTT-----
i saiBol1.JH378276          C 0 I 5
s cebCap1.NW_016107979v1       294292 168 -   1024465 -AAACAAGGAACCACAACATCGAGGGAAATCTAGAAAGGTAGGAGATGGAACTTTGG---AGATGTAACATTAGGACAGGTGAAAAGCAGAGATTCTAGGCTCCTAAAATAACATGG--GAACAGGCCCAGAACAACT-TTGGACATGGTGTG-TTTGGATGCATTGGA----TGCCTTT-----
i cebCap1.NW_016107979v1    C 0 I 5
s aotNan1.NW_018511953v1       739594 168 -   3745603 -AAACAAGGAACCACAACATTGAGGGAAATCTAGAAAGGTAGGAGATGGAACTTTGG---AGATGTAAGATTAGGACAGGTGAAAAGCAGAGATTCTGGGCTCCTAAAATAACATGG--GAACAGGCCCAGAACAACC-TTGGACATGGTGTG-TTTGGATGCATTGGA----TGCTTTT-----
i aotNan1.NW_018511953v1    C 0 I 5
s micMur3.chr3                 923108 174 - 119751181 TAAACAAGGGACAGCAACATTTAGGGAAATCTAGAAAGGAAGGAGACTGGACTTTGG---AAATGTCAGATTAGGATAGGTGAAAA---GATATTCTAAACTACAAAAATAATGTGGTAGAAAAGACCCAGAATGTCC-TTGGGCATGATGTGTTTTGGATGAATTGGA----TGCTGTTCTTTT
i micMur3.chr3              I 69 I 1
s proCoq1.NW_012149419v1       646926 176 -   2566024 TAAACAAGGGACAGCAACATTTAGGGAAATCTAGAAAGGGAGGAGACTGGAGACTGGAGAAGATGTCAGATTAGGACAGGTGAAAA---GATATTCTAGGCTACAAAAATCATGTGATAGAAAAGACCCAGAATGTCC-TTGGACGTGATGTG-TTTGGATGCATTGGA----TGCTATTCTTTT
i proCoq1.NW_012149419v1    I 69 I 1
s otoGar3.GL873530            6764040 169 -  36342412 TAAACAA-GGACAGCAACATGTAGGGAAATCTAGAAAGT-AGGAGGCTGGACTTTGG---GGATGTCAGATTAGGGTAGGTGAAAA---GATACTCTAGGCTGT-TAAATAGTGTGGTAGGAAAGGCCCAGAATGACC--TGGGCATGATGTG-TTTTGGTGCACTGGG----TGCTGTTCTCTT
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55178783 101 + 124595110 ---ACAAGGGGCAGTGATACTTAGGGAAGT-----AACACAGAAG-----ACTCTGC---AATTTT---ACTAGAAC--------------------------------TAGCGTGG-----------CTGACCGGCC--TGAGTGTAGTGTG-CTTCAG-GCACTT------------------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 48944 147 -  40214260 TAAAGAAGGGATAGCAAGATTTAGGGAAATCTAGAAAGATAAGAACCTGGACCTTGG---AGATGTCAGATCAAGACAGATGAAAAGAGGAT---------------------------AAAAAGGCACAGAGCAACTTTTGGGCACGGTGTG-TTTAGGTGCATTAGA--GCTGTCTTT-----
i canFam3.chr30             I 2 I 3
s dasNov3.JH569975              41213 175 -   2180720 TAAACAAGGGTCAGCAACATTTAGGGGCATCTAGAAAAGTAGGAAGCTGGACTTTGG---AGGTATCAAATTTGGATGTATGAAAAGAAAATATTCTAAGCTACTAAAAATATGTAGTAGAAAAGGCCCAGAACAACC-TTGAGCATAGGGCA-TTTGGGTACATTGGATTGCTGCCCTT-----
i dasNov3.JH569975          C 0 C 0
e manLeu1.NW_012105520v1       298355   4 -   1458659 I
e chlSab2.chr29              21064964   4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=1466627.000000
s hg38.chr15_KI270850v1_alt    191826 167 +    430880 GAGAAGGAAGGTTGATGTGTTGAAGTCAT-GGAAAGCAAGATTGTC-------CAGAAAAGACAGATGGACAGAAGTCTTGAATTTGAGACAGGCATGTTTCTATTTGGTATGTTTGTTGATAAGAAGGCCTTAA----GCAGGGAATGGTGTGCTGAGAATATTGTTTTAGAAAGAT-A----
s panTro5.chr15              18001470 167 -  83230942 GAGAAGGAAGGTTGATGTGTTGAAGTCAT-GGAAAGCAAGATTGTC-------CAGAAAAGACAGATGGACAGAAGTCTTGAATTTGAGACAGGCATGTTTCTATTTGGTATGTTTGTTGATAAGAAGGCCTTAA----GCAGGGAATCATGTGCTGAGAATATTGTTTTAGAAAGAT-A----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227772 167 -  99763055 GAGAAGGAAGGTTGATGTGTTGAAGTCAT-GGAAAGCAAGATTGTC-------CAGAAAAGACAGATGGACAGAAGTCTTGAATTTGAGACAGGCATGTTTCTATTTGGTATGTTTGTTGATAAGAAGGCCTTAA----GCAGGGAATCATGTGCTGAGAATATTGTTTTAGAAAGAT-A----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290431 167 +    378907 GAGAAGGAAGGTTGATGTGTTGAAGTCAT-GGAAAGCAAGATTGTC-------CAGAAAAGGCAGATGGATAGAAGTCTTGAATTTGAGACAGGCATGTTTCTATTTGGTGTGTTTGTTGATAAGAAGGCCTTAA----GCAGGGAATCGTGTGCTGAGAATATTGTTTTAGAAAGAT-A----
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102145972 167 + 121039945 GAGAAGGAAGGTTGATATGTTGATGTCAT-GGAAAGCAAGATTGTC-------CAGAAAAGGCAGATGGATAGAAGTCTTGAATTTGAGACAGGCATGTTTCTATTTGGTGTGTTTGTTGATAAGAAGGCCTTAA----GCAGGGAATCGTGTGCTGAGAATATTGTTTTAGAAAGAT-A----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60356897 166 + 169600520 gagaaggaaggttgatgtgtt-aagtcat-ggaaagtaagattggc-------cagaaaaggcagatGGTTAAAAGTCTTGAATTCAAGACAGGCATGTTTCTATTTGGTGTGATTGTTGATAGGAAGGCCTTTA----TCAGGGAATCGTGTGCTGAAAATATTGTTTTAGAAAGAT-A----
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352747 167 -   6271500 GAGAAGGAAGGTTGATGTGTTGAAGTCAT-GGAAAGCAAGATTGTC-------CAGAAAAGGAAGATGGTTGAAAGTCTTGAATTTGAGAATGGAACGTTTCTATTTGTTGTGTTTGTTGATAAGAAGGCCTTAA----GCAGGGAATCGTGTGCTGATAATATTGTTTTAGAAAGAT-A----
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812611 166 -   1987038 GAGAAGGAAGGTTGATGTGTT-AAGTCAT-GGAAAGTAAGATTGGC-------CAGAAAAGGCAGATGGTTAAAAGTCTTGAATTCAAGACAGGCATGTTTCTATTTGGTGTGATTGTTGATAGGAAGGCCTTTA----TCAGGGAATCGTGTGCTGAGAATATTGTTTTAGAAAGAT-A----
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472457 167 -   9444221 GAGAAGGAAGGTTGATGTGTTGAAGTCAT-GGAAAGCAAGATTGGC-------CAGAAAAGGCAGATGGTTAAAAGTCTTGAATTCGAGACAGGCATGTTTCTATTTGGTGTTGTTATTGTTAGGAAGGCCTTAA----GCAGGGAATAGTGTGCTGAGGATATTACTTTACAGAGAT-A----
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             508936 172 -   3282555 GAGAAGGAAGGTTGATGTGTTGAAGTCAT-GGAAAGCAGGATTGAC-------TGGAAAAGGCAGATGGTTAAAAGTCTTGAATTAGAGACCAACATGTTTCTGTTTGGTGTGATTATTGATAGGAAGGCCTTAAACAGGCAGGCGATAGTGTGCTGAGAATATTGTTTTAGAAAGATAA----
i saiBol1.JH378276          I 5 C 0
s cebCap1.NW_016107979v1       294465 172 -   1024465 GAGAAGGAAGGTTGATGTGTTGAACTCAT-GGAAAGCAAGATTGGC-------TGGAAAAGGCCGATGGTTAAAAGTCTTGAATTAGAGACAAACATGTTTCTATTTGGTGTGATTCTTGATAGGAAGGCCTTAAACAGGCAGGCAATAGTGTGCTGAGAATATTGTTTTAGAAAGATAA----
i cebCap1.NW_016107979v1    I 5 C 0
s aotNan1.NW_018511953v1       739767 172 -   3745603 GCAAAGGAAGGTTGATGTGTTGAAGTCAT-GGAAAGCAAGATTGTC-------TGGAAAAGGCAGATGGTTAAAAGTCTTGAATTAGAGACAAACATGTTTCTATTTGGTGTGATTATTGATAGGAAGGCTTTAAACAGGCAGGCAATAGTGTGCTGAGAATATTGTTTTAGAAAGATAA----
i aotNan1.NW_018511953v1    I 5 C 0
s micMur3.chr3                 923283 172 - 119751181 GGAGAAGAAGGTTGATGTGTTGGACTCAT-GGAAAGCAAGATGGACTAAGAAATAAGAAAGGCAGATGGCTACAAGTCTTGAATTAGAGATAA--ATGTTCCTATTTAATATGATTGTTGATAGGAAGGCCTCAA----GGAGAAAAGAGTGTGCTGAGAATATTGTTTTAGAAAGAT-A----
i micMur3.chr3              I 1 I 347
s proCoq1.NW_012149419v1       647103 165 -   2566024 GGAGAAGAAGGTCGATGTGTTGGAGTCAT-GGAAAGCAAGATGGAC-------TAAAAAAGGCAGATGGCTACAAGTCTTGAATTAGAGACAA--ATGTTCCTATTTGGTATGATTGTTGATAGGAAGGCCTTAA----GGAGAGAACAGTGTGCTGAGAATATTGTTTTAGAACGAT-A----
i proCoq1.NW_012149419v1    I 1 I 1
s otoGar3.GL873530            6764210 151 -  36342412 GGAGAAGGTGGTTGATGTGTTGGAGTCATGGGGAAGCAAGAGTGGC-------TAGAAAAGGCAGATGATTAGAAGTCATGTCTTAGAGACTA--GTGTTTCTATTTGGTGTGATTATTGATA-GAAGGCCTGAA----GTA--------------GAGAATATTGTTTTAGAAAGAT-A----
i otoGar3.GL873530          I 1 I 1
s mm10.chr9                  55178884 132 + 124595110 ----------------------AAGCAGA-GGAGAGGAGGCTC--C-------TAGAATACACTGGAAGGGAAAAGCA--GAGTTAGAGACAA-CATGCT--TGTTGGATAAGGTTGTTGGTCATA------TAA----GCAGAAAATGGTTTGCTGTGGATATTGTTTTCGGAAGAT-G----
i mm10.chr9                 C 0 I 1
s canFam3.chr30                 49094 148 -  40214260 GAAGAACAAGATTGAT--------------AAAAAGCAAGGTTTCC-------TAGAAAAG-CAGATGGCTAAAAGTCTTGAATTAGAGACAA--ATGTTTTTATTTGTTGTGATTGTTGACAAAAAGGCCTTAA----GCAAAGGCCAATGGGCTGAGAA---TGTTTTATAGAGAT-A----
i canFam3.chr30             I 3 C 0
s dasNov3.JH569975              41388 171 -   2180720 TCAGGAGAGGCTTGGTGTGTTGAATTCAT-GGAACGCAGAGTTGGC-------TAGAAAAGGCAAATGGTTAAAAGTCTTGTATTAGAGCCAAACATGTCTGTATTTGGTGTAATTGTTAGTTGGAAGCCTTTAA----ACAGAGAGTACTGTGCTGAGAATATTATTTTAGGGAGAT-GGCAA
i dasNov3.JH569975          C 0 C 0
e manLeu1.NW_012105520v1       298355   4 -   1458659 I
e chlSab2.chr29              21064964   4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=12720.000000
s hg38.chr15_KI270850v1_alt    191993 3 +    430880 TGT
s panTro5.chr15              18001637 3 -  83230942 TGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227939 3 -  99763055 TGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290598 3 +    378907 TGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146139 3 + 121039945 TGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357063 3 + 169600520 TGT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352914 3 -   6271500 TGT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812777 3 -   1987038 TGT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472624 3 -   9444221 TGT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509108 3 -   3282555 TGT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       294637 3 -   1024465 TGT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       739939 3 -   3745603 TGT
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       647269 3 -   2566024 TGA
i proCoq1.NW_012149419v1    I 1 C 0
s otoGar3.GL873530            6764362 3 -  36342412 TAA
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  55179017 2 + 124595110 GG-
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 49242 2 -  40214260 -AT
i canFam3.chr30             C 0 I 11
s dasNov3.JH569975              41559 3 -   2180720 TGA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 923455 347 - 119751181 I
e manLeu1.NW_012105520v1       298355 4 -   1458659 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=481744.000000
s hg38.chr15_KI270850v1_alt    191996 51 +    430880 TGAATTCTGTTTGGGATGTGCTGATTAATACTTAGGTGGAGAAGTTTTGTG
s panTro5.chr15              18001640 51 -  83230942 TGAATTCTGTTTCGGATGTGCTGATTAATACTTAGGTGGAGAAGTTTTGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227942 51 -  99763055 TGAATTCTGTTTCGGATGTGCTGATTAATACTTAGGTGGAGAAGTTTTGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290601 51 +    378907 TGAATTTTGTTTGGGATGTGCTGATTAATACTTAGGTGGAGAAGTTTTATG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146142 51 + 121039945 TGAATTCTGTTTGGGATGGGCTGATTAATACTTAGGTGGAGAAGTTTTGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357066 51 + 169600520 TGAATTCTGTTTGGGATGTGCTGATTAATATTTAGGTGGAGAAATTTTGTG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352917 51 -   6271500 TGAATTCTGTTTGGGATGTGCTGACTAATACTTAGGTGGAGAAGTTTTGTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812780 51 -   1987038 TGAATTCTGTTTGGGATGTGCTGATTAATATTTAGGTGGAGAAATTTTGTG
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472627 47 -   9444221 TGAATTCTGTTTGCGATGTGC----TAATACTTAGGTGGAGAAGTTTTGTG
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509111 51 -   3282555 TGAATTCTGTTTGGGATGTGCTAATTAATACTCAGGGAAAGAAGTTTTGTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       294640 51 -   1024465 TGAATTCTGTTTGGGGTGTGCTAATTAATACTCAGGGAAAGAAGTTTTGTG
i cebCap1.NW_016107979v1    C 0 I 11
s aotNan1.NW_018511953v1       739942 51 -   3745603 TGAATTCTGTTTGGGATGTGCTAATTAATACTCAGGGAAAGAAGTTTTGTG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 923802 51 - 119751181 TGAATTCTGTTTGGGATGTACTGATTAGTACTCAAGTGGAGAAGTTTTGTG
i micMur3.chr3              I 347 C 0
s proCoq1.NW_012149419v1       647272 50 -   2566024 TGAATGCTGTTT-GGATGTGCTGATTAATACTCAAATGGGGAAGTTTTGTG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6764365 51 -  36342412 CGAATTCAATTTGGGATGTGCTGATTAATATTCAGGTAAAGAAGTTTTGTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55179019 42 + 124595110 -----TACATTCAGGATTTGCTGACTAAAGTGCAGGTAAAG----TGTGTG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 49255 35 -  40214260 AGAATTCA-------------TCATTAATGCTCAAGTGGAGA---TTTAGG
i canFam3.chr30             I 11 C 0
s dasNov3.JH569975              41562 51 -   2180720 TGAATTCTGTTTGGGATGTGTTGATTAATACTCATGTGGAGAAATTCTATA
i dasNov3.JH569975          C 0 C 0
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=184272.000000
s hg38.chr15_KI270850v1_alt    192047 20 +    430880 GATGGGAACA----TGAC-TGAGGT
s panTro5.chr15              18001691 20 -  83230942 GATGGGAACA----TGAC-TGAGGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17227993 20 -  99763055 GATGGGAACA----TGAC-TGAGGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290652 20 +    378907 GATGGGAACA----TGAC-TGAGGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146193 20 + 121039945 GATGGGAACA----TGAC-TGAGGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357117 20 + 169600520 GATGGGAACA----TGAA-TGAGGT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352968 20 -   6271500 GATGGGAACA----TGAC-TGAGGT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812831 20 -   1987038 GATGGAAACA----TGAC-TGAGGT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472674 20 -   9444221 GATGGGAACA----TGAC-TGAGGT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509162 20 -   3282555 GATGGGAACG----TGAC-TAAGGC
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       739993 20 -   3745603 GATGGGAACG----TGAC-TAAGGT
i aotNan1.NW_018511953v1    C 0 I 3
s micMur3.chr3                 923853 20 - 119751181 GATGGGAATA----TGAC-TGAAGT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       647322 20 -   2566024 GATGGGAATA----TGAC-CGAGGT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6764416 20 -  36342412 GATGGGAATA----TAAC-TGAGCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55179061 19 + 124595110 GATGG--AGA----TGACTTGAGGT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 49290 20 -  40214260 AGTAGGAATG----TGGC-TGAGTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              41613 24 -   2180720 GATGGGAATAAATGTGGC-TGAGGT
i dasNov3.JH569975          C 0 C 0
e cebCap1.NW_016107979v1       294691 11 -   1024465 I
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=140034.000000
s hg38.chr15_KI270850v1_alt    192067 26 +    430880 TGAAGGTACAGGTGG---AAATACAGGCC
s panTro5.chr15              18001711 26 -  83230942 TGAAGGTACAGGTGG---AAATACAGGCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228013 26 -  99763055 TGAAGGTACAGGTGG---AAATACAGGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290672 26 +    378907 TGAAGGTACAGGTGG---AAATACAGGCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146213 26 + 121039945 TGAAGGTACAGGTGG---AAATACAGGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357137 26 + 169600520 TGAAGGTACAGGTGG---AAATACAGGCC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5352988 26 -   6271500 TAAAGACACAGGAGG---AAATACAGGCC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812851 26 -   1987038 TGAAGGTACAGGTGG---AAATACAGGCC
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472694 26 -   9444221 TGAAGGTATAGGAGG---AAATACAGGCC
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509182  3 -   3282555 --------------------------GCT
i saiBol1.JH378276          C 0 C 0
s micMur3.chr3                 923873 29 - 119751181 TGAAGGTGTAAGAGGGGAAGATACAGGCT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       647342 29 -   2566024 TAAAGGGGTAAGAGGGGAAGATACAGGCT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6764436 29 -  36342412 TGAAGGTATAGGAGAACAAGATACAGACT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55179080 20 + 124595110 ------TGGAGGAGG---AGATACAGGTT
i mm10.chr9                 C 0 I 2
s canFam3.chr30                 49310 29 -  40214260 TGAAGATATAGGAGTAGGAGATTTAGACT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              41637 29 -   2180720 TGAAGGTGAAGGAGGAGGAGATAAAGGCT
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       740013  3 -   3745603 I
e cebCap1.NW_016107979v1       294691 11 -   1024465 I
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=578791.000000
s hg38.chr15_KI270850v1_alt    192093 66 +    430880 AAAGGCATTTGTGAGCATTGT-GGGAAAA-CAAGTGT-GGGTGGAAGATCAG-------------------------------GGCTGAAAG-GTGCACAC
s panTro5.chr15              18001737 67 -  83230942 AAAGGCATTTGTGAGCATTGTGGGGAAAA-CAAATGT-GGGTAGAAGATCAG-------------------------------GGCTGAAAG-GTGCACAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228039 67 -  99763055 AAAGGCATTTGTGAGCATTGTGGGGAAAA-CAAATGT-GGGTAGAAGATCAG-------------------------------GGCTGAAAG-GTGCACAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290698 66 +    378907 AAAGGCATTTGTGAGCATTGT-GGGAAAA-CAAGTGT-GGGTGGAAGATCAG-------------------------------GGCTGAAAG-GTGCACAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146239 67 + 121039945 AAAGGCATTTGTGAGCATTGTGGGGAAAA-CAAGTGT-GGGTGGAAGATCAG-------------------------------GGCTGAAAG-GTGCACAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357163 68 + 169600520 AAAGGCATTTGTAAGCATTGTGAGGAAAA-CAAGCGTAGGATGGAAGATCAG-------------------------------GGCTGAAAG-GTGCACAC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353014 68 -   6271500 AAAAGCATTTGTGAGCACTGTGGGGAAAA-CAAGCGTAGGATGGAAGATCAG-------------------------------GGCTGAAAG-GTGCACAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812877 68 -   1987038 AAAGGCATTTGTAAGCATTGTGAGGAAAA-CAAGCGTAGGGTGGAAGATCAG-------------------------------GGCTGAAAG-GTGCACAC
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472720 68 -   9444221 AACGGCATTTGTGAGCATTGTGAGGAAAA-CAAGCATAGGATGGAAGATCAG-------------------------------GGCTGAAAG-GTGCACAC
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509185 69 -   3282555 AAAGGCATTTGTGAGAATTGTGAGGAAAACAACGTGTCGCATGGGAGATCAG-------------------------------GGCTAAAAG-GTGCACAC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       294702 67 -   1024465 AAAGGCATTTATGAGAATTGTGAGAAAA--CACGTGTAGCATGGGAGATCAG-------------------------------GGCTAAAAG-GTGCACAC
i cebCap1.NW_016107979v1    I 11 C 0
s aotNan1.NW_018511953v1       740016 68 -   3745603 AAAGGCATTTGTGAGAATTGTGAGGAAAA-CACATGTAGCATGGGAGATCAG-------------------------------GGCTAAAAG-GTGCACAC
i aotNan1.NW_018511953v1    I 3 C 0
s micMur3.chr3                 923902 68 - 119751181 AAAGGCATTTGTGAGAATTCTGAAGAAAA-CAAGTGTAGAATGGAAAATTAG-------------------------------GGCTGAAAG-ATACACAC
i micMur3.chr3              C 0 I 109
s proCoq1.NW_012149419v1       647371 67 -   2566024 AAAGGCATTTGTGAGAATTCTGAAGAAAA-CAAGTGTGGAAT-GAAGATTAG-------------------------------GGCTGAAAG-GTACACAC
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6764465 69 -  36342412 AAAGGCATTTGCAAGAATTCTGAAGAAAA-TAAGCATAGAACAGAAGATTAG-------------------------------GGCTGAAAATGTGCACAC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55179102 95 + 124595110 GGAGACGTTATTGAA-ATTCTGAAGAAAA-CAAATACAGGACAGGAGAGAAGTCTTCATAACATGAAGCCCTGTGTAGAATCTGGCTAAGAA----CACAG
i mm10.chr9                 I 2 I 7
s canFam3.chr30                 49339 66 -  40214260 AAGGGCATTTGTGAGAACTG--AAGAAAA-TAAGTGTGGGATAGAACATTGG-------------------------------GGCTAAAGG-GTACAAAT
i canFam3.chr30             C 0 I 1
s dasNov3.JH569975              41666 68 -   2180720 AAGGACATTTATATGAACTCTGAAGAAAG-TGAATGTAGGATGGAAGATTAG-------------------------------GACTGGAAG-TAGCCTGC
i dasNov3.JH569975          C 0 C 0
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=-3969.000000
s hg38.chr15_KI270850v1_alt    192159 4 +    430880 -AGGG
s panTro5.chr15              18001804 4 -  83230942 -AGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228106 4 -  99763055 -AGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290764 4 +    378907 -AGGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146306 4 + 121039945 -GGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357231 4 + 169600520 -AGGA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353082 4 -   6271500 -AGGG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812945 4 -   1987038 -AGGA
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472788 4 -   9444221 -TGGG
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509254 4 -   3282555 -TAGG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       294769 4 -   1024465 -TAGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       740084 4 -   3745603 -TAGG
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       647438 3 -   2566024 --GGG
i proCoq1.NW_012149419v1    C 0 I 223
s otoGar3.GL873530            6764534 4 -  36342412 -CAGT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55179204 4 + 124595110 -TGTG
i mm10.chr9                 I 7 C 0
s canFam3.chr30                 49406 3 -  40214260 -AGG-
i canFam3.chr30             I 1 C 0
s dasNov3.JH569975              41734 4 -   2180720 CTGG-
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 923970 109 - 119751181 I
e manLeu1.NW_012105520v1       298355 4 -   1458659 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=157173.000000
s hg38.chr15_KI270850v1_alt    192163 20 +    430880 AGAAGGGAGCTCCATGAAGT
s panTro5.chr15              18001808 20 -  83230942 AGAAGGGAGCTCCATGAAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228110 20 -  99763055 AGAAGGGAGCTCCATGAAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290768 20 +    378907 AGAAGGGAGCTCCATGAAGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146310 20 + 121039945 AGAAGGGAGCTCCATGAAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357235 20 + 169600520 AGAAGGGAGCTCCATGAAGT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353086 20 -   6271500 AGAAGGGAGCTCCATGAAGT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1812949 20 -   1987038 AGAAGGGAGCTCCATGAAGT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472792 20 -   9444221 AGAAGGGAGCTCCATGAAGT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509258 20 -   3282555 AGCAGAGAGCTCCAAGAAGT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       294773 20 -   1024465 AGAAGAGAGCTCCATGAAGT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       740088 20 -   3745603 AGAAGAGAGCTCCATGAAGT
i aotNan1.NW_018511953v1    C 0 I 264
s otoGar3.GL873530            6764538 18 -  36342412 --GGGGGTGCTCTGTGAAGT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55179208 13 + 124595110 AAAGGAGACCTGC-------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 49409 19 -  40214260 -GGAGGGAGCTCCGTGAAAC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              41738 19 -   2180720 -GCAGGGGGCTCCATGAGGT
i dasNov3.JH569975          C 0 I 5
e micMur3.chr3                 923970 109 - 119751181 I
e proCoq1.NW_012149419v1       647441 223 -   2566024 I
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=8281.000000
s hg38.chr15_KI270850v1_alt    192183 1 +    430880 A
s panTro5.chr15              18001828 1 -  83230942 A
i panTro5.chr15             C 0 I 6
s panPan2.chr15              17228130 1 -  99763055 A
i panPan2.chr15             C 0 I 6
s gorGor5.CYUI01015946v1       290788 1 +    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146330 1 + 121039945 A
i nomLeu3.chr6              C 0 I 6
s rheMac8.chr7               60357255 1 + 169600520 A
i rheMac8.chr7              C 0 I 6
s macNem1.NW_012011056v1      5353106 1 -   6271500 A
i macNem1.NW_012011056v1    C 0 I 6
s cerAty1.NW_012002657v1      1812969 1 -   1987038 A
i cerAty1.NW_012002657v1    C 0 I 6
s colAng1.NW_012112253v1      7472812 1 -   9444221 A
i colAng1.NW_012112253v1    C 0 I 6
s saiBol1.JH378276             509278 1 -   3282555 A
i saiBol1.JH378276          C 0 I 6
s cebCap1.NW_016107979v1       294793 1 -   1024465 A
i cebCap1.NW_016107979v1    C 0 I 261
s otoGar3.GL873530            6764556 1 -  36342412 A
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 49428 1 -  40214260 A
i canFam3.chr30             C 0 I 6
s dasNov3.JH569975              41762 1 -   2180720 A
i dasNov3.JH569975          I 5 C 0
e micMur3.chr3                 923970 109 - 119751181 I
e proCoq1.NW_012149419v1       647441 223 -   2566024 I
e aotNan1.NW_018511953v1       740108 264 -   3745603 I
e mm10.chr9                  55179221 0 + 124595110 C
e manLeu1.NW_012105520v1       298355 4 -   1458659 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=70484.000000
s hg38.chr15_KI270850v1_alt    192184 18 +    430880 CATGGGCA--------------------------------------------------------------G----AGTTTGAGT
s panTro5.chr15              18001835 18 -  83230942 CATAGGCA--------------------------------------------------------------G----AGTTTGAGT
i panTro5.chr15             I 6 C 0
s panPan2.chr15              17228137 18 -  99763055 CATGGGCA--------------------------------------------------------------G----AGTTTGAGT
i panPan2.chr15             I 6 C 0
s gorGor5.CYUI01015946v1       290789 18 +    378907 CATGGGCA--------------------------------------------------------------G----AGTTTGAGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146337 18 + 121039945 CATGGGCA--------------------------------------------------------------G----AGTTTGAGT
i nomLeu3.chr6              I 6 C 0
s rheMac8.chr7               60357262 18 + 169600520 CATGGGCA--------------------------------------------------------------G----AATTTGAGG
i rheMac8.chr7              I 6 C 0
s macNem1.NW_012011056v1      5353113 18 -   6271500 CATGGGCA--------------------------------------------------------------G----AGTTTGAGA
i macNem1.NW_012011056v1    I 6 C 0
s cerAty1.NW_012002657v1      1812976 18 -   1987038 CATGGGCA--------------------------------------------------------------G----AATTTGAGT
i cerAty1.NW_012002657v1    I 6 C 0
s colAng1.NW_012112253v1      7472819 18 -   9444221 CATGGGCA--------------------------------------------------------------G----AGTTTGAGT
i colAng1.NW_012112253v1    I 6 C 0
s saiBol1.JH378276             509285 18 -   3282555 TATGGGCA--------------------------------------------------------------G----AGTTTGAGT
i saiBol1.JH378276          I 6 I 179
s otoGar3.GL873530            6764557 19 -  36342412 ---GAGCA--------------------------------------------------------------GCCACAGTTTGAAT
i otoGar3.GL873530          C 0 I 66
s mm10.chr9                  55179221 16 + 124595110 --TGAGTT--------------------------------------------------------------G----GTTTTGTAT
i mm10.chr9                 C 0 I 1
s canFam3.chr30                 49435 18 -  40214260 CATGGACA--------------------------------------------------------------G----GGTCTGAAT
i canFam3.chr30             I 6 I 60
s dasNov3.JH569975              41763 80 -   2180720 CATAGGCATAAAGGAATTGGATATAATAGGGGTTGAAGAAATAACCCGCCCCCCCACCCCCAAATTCATTG----AGTCTGGTT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 923970 109 - 119751181 I
e proCoq1.NW_012149419v1       647441 223 -   2566024 I
e aotNan1.NW_018511953v1       740108 264 -   3745603 I
e cebCap1.NW_016107979v1       294794 261 -   1024465 I
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=183366.000000
s hg38.chr15_KI270850v1_alt    192202 50 +    430880 -GAAGGTAGTCAGTAATCT--GGT-CT--AGAAATTGGTGAAT---TAAGCGGCTT-----GG---G
s panTro5.chr15              18001853 50 -  83230942 -GAAGGTAGTCAGTAGTCT--GGT-CT--AGAAATCGGTGAAT---TAGCTGGCTT-----GG---G
i panTro5.chr15             C 0 I 1
s panPan2.chr15              17228155 50 -  99763055 -GAAGGTAGTCAGTAGTCT--GGT-CT--AGAAATCGGTGAAT---TAGCTGGCTT-----GG---G
i panPan2.chr15             C 0 I 1
s gorGor5.CYUI01015946v1       290807 50 +    378907 -GAAGGTAGTCAGTAATCT--GGT-CT--AGAAATCGGTGAAT---TAACCGGCTT-----GG---G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146355 50 + 121039945 -GAAGGTAGTCAGTAACCT--GGT-CT--AGAAATCGGTGAAT---TAGCCGGCTT-----GG---G
i nomLeu3.chr6              C 0 I 2
s rheMac8.chr7               60357280 50 + 169600520 -GGTGGTAGACAGTAATCT--GAT-CT--AGAAATCAGTGAAT---TAGCCAGCTT-----GG---G
i rheMac8.chr7              C 0 I 1
s macNem1.NW_012011056v1      5353131 50 -   6271500 -GGAGGTAGTCAGTAATCT--GGT-CT--AGAAATCGGGTAAT---TAGCCAACTT-----AG---G
i macNem1.NW_012011056v1    C 0 I 1
s cerAty1.NW_012002657v1      1812994 50 -   1987038 -GGTGGTAGACAGGAATCT--GAT-CT--AGAAATCAGTGAAT---TGGCCAGCTT-----GG---G
i cerAty1.NW_012002657v1    C 0 I 1
s colAng1.NW_012112253v1      7472837 53 -   9444221 -GAAGGTAGTCAGTAACCT--GGT-CT--AGAAATCAGAGAAT---TAGCTGGCTT-----GGAAAA
i colAng1.NW_012112253v1    C 0 I 1
s saiBol1.JH378276             509482 50 -   3282555 -GAAGGTAGTCATTAACCT--GGT-CT--AGATATCGGTGAAT---TCGCTGGCTT-----GG---G
i saiBol1.JH378276          I 179 I 7
s micMur3.chr3                 924079 47 - 119751181 -GAAGGTGGTCATTAACCT--GGT-CT--AGAAATCGGTAAAT---TAGTCGGCTT-----------
i micMur3.chr3              I 109 C 0
s otoGar3.GL873530            6764642 52 -  36342412 -GAAGGTAACTGTTAACCT--GGT-TT--AGAAATCAGTGAAT---TAGTCTGCTCGGAGG------
i otoGar3.GL873530          I 66 C 0
s mm10.chr9                  55179238 33 + 124595110 -GAAGGTAGTCATTGTCCTTCAAT-TC--AGATTGCA------------------------------
i mm10.chr9                 I 1 I 1
s canFam3.chr30                 49513 53 -  40214260 -GGAAGTGGTTTTTAAACT--GGT-CTACAGAGATCTATAGATCA-CAGCGAATTT-----AG----
i canFam3.chr30             I 60 I 14
s dasNov3.JH569975              41843 50 -   2180720 AAAAGTTGGTCCTTAACCT--GGTATT--AGAAATCAGAGAATTATTAATTGGA-------------
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       647441 223 -   2566024 I
e aotNan1.NW_018511953v1       740108 264 -   3745603 I
e cebCap1.NW_016107979v1       294794 261 -   1024465 I
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=5327.000000
s hg38.chr15_KI270850v1_alt    192252 3 +    430880 AAA-
s panTro5.chr15              18001904 3 -  83230942 AAA-
i panTro5.chr15             I 1 C 0
s panPan2.chr15              17228206 3 -  99763055 AAA-
i panPan2.chr15             I 1 C 0
s gorGor5.CYUI01015946v1       290857 3 +    378907 AAA-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146407 3 + 121039945 AAA-
i nomLeu3.chr6              I 2 C 0
s rheMac8.chr7               60357331 3 + 169600520 AAA-
i rheMac8.chr7              I 1 C 0
s macNem1.NW_012011056v1      5353182 3 -   6271500 GGA-
i macNem1.NW_012011056v1    I 1 C 0
s cerAty1.NW_012002657v1      1813045 3 -   1987038 AAA-
i cerAty1.NW_012002657v1    I 1 C 0
s colAng1.NW_012112253v1      7472891 3 -   9444221 AAA-
i colAng1.NW_012112253v1    I 1 C 0
s saiBol1.JH378276             509539 3 -   3282555 GAG-
i saiBol1.JH378276          I 7 C 0
s aotNan1.NW_018511953v1       740372 3 -   3745603 AAA-
i aotNan1.NW_018511953v1    I 264 C 0
s micMur3.chr3                 924126 3 - 119751181 AAA-
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6764694 3 -  36342412 GAA-
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55179272 2 + 124595110 GG--
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 49580 3 -  40214260 AAA-
i canFam3.chr30             I 14 C 0
s dasNov3.JH569975              41893 3 -   2180720 -GAT
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       647441 223 -   2566024 I
e cebCap1.NW_016107979v1       294794 261 -   1024465 I
e manLeu1.NW_012105520v1       298355 4 -   1458659 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=414951.000000
s hg38.chr15_KI270850v1_alt    192255 58 +    430880 AAAGTCGAGATAA---ATATAAA--CTACCCCTTTAGAGATTTTGGCAATTGAAGTAGA----AATA
s panTro5.chr15              18001907 58 -  83230942 AAAATCGAGATAA---ATATAAA--CTACCCCTTTAGAGATTTTGGCAATTGAAGTAGA----AATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228209 58 -  99763055 AAAATCGAGATAA---ATATAAA--CTACCCCTTTAGAGATTTTGGCAATTGAAGTAGA----AATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290860 58 +    378907 AAAGTCGAGATAA---ATATAAA--CTACCCCTTTAGAGATTTTGGCAATTGAAGTAGA----AATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146410 58 + 121039945 AAAATCGAGATAA---ATATAAA--CTACCCCGTTAGAGATTTTGGCAATTGAAGTAGA----AATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357334 57 + 169600520 AAAATCGAGATAA---ATATAAA---TACTCCTTTAGAGATTTTGGCAATTGAAGTAGA----AAAA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353185 58 -   6271500 AAAATTGAGATAA---ATATAAA--GTACTCCTTTAGAGATTATGGCAATTGAAGTAGA----AAAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813048 57 -   1987038 AAAATCGAGATAA---ATATAAA---TACTCCTTTAGAGATTTTGGCAATTGAAGTAGA----AAAA
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472894 58 -   9444221 AAAATCGAGACGA---ATATAAA--CTACTCCTTTAGAGATATTGGCAATTGAAGTAGA----AAAA
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509542 58 -   3282555 GAAGTCAAGATGA---GTATAAT--TTACTCCTTTAGCAATTTTGGCAATTGAAGTAGA----GAAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       295055 58 -   1024465 AAAGTCAAGATGA---GTATAAT--TTACTCCTTTAGCGATTTTGGCAATTGAAGTGGA----GAAA
i cebCap1.NW_016107979v1    I 261 C 0
s aotNan1.NW_018511953v1       740375 58 -   3745603 AAAGTCAAGATGA---GTATAAT--TTACTCCTTTAGCGATTTCAGCAATTGAAGTAGA----GAAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 924129 61 - 119751181 AAAGTAGAGATAGTAAGTATAAA--CTACTCCTTTAGAGGTTTTGGCAGTTGAAATAAA----AGGA
i micMur3.chr3              C 0 I 4
s otoGar3.GL873530            6764697 65 -  36342412 AAAGTGGAGATAATATGTATCAA--CTACTTCTTTAGACAGTTTGGCAGTTGACATGAAACACAGGA
i otoGar3.GL873530          C 0 I 16
s mm10.chr9                  55179274 55 + 124595110 AAAGTGGAGGTAG------TGGG--TAACTCCTTCAGAGATCTTGCTAATTGAAACTTA----AAGC
i mm10.chr9                 C 0 I 5
s canFam3.chr30                 49583 61 -  40214260 AAAAAGGAGATAGTAAGTATGGACTCTATTCCTTTAGAGATTTTGATGGCTGAAGTAAA----GA--
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              41896 48 -   2180720 --------AGTAA---ATATAAA--CTCTTCTTTCAGATATTTTGGCAATTGAAATAAA----GA--
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       647441 223 -   2566024 I
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=175293.000000
s hg38.chr15_KI270850v1_alt    192313 18 +    430880 TAAGGTAATTG-AAAAAAG
s panTro5.chr15              18001965 18 -  83230942 TAAGGTAATTG-AAAAAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228267 18 -  99763055 TAAGGTAATTG-AAAAAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290918 18 +    378907 TAAGGTAATTG-AAAAAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146468 18 + 121039945 TAAGGTAATTG-AAAAAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357391 18 + 169600520 TAAGGTAATTG-AACAAAG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353243 18 -   6271500 TAACATAATTG-GAAAAAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813105 18 -   1987038 TAAGGTAATTG-AACAAAG
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472952 18 -   9444221 TAAAGTAATTG-AAAAAAG
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509600 19 -   3282555 TAAGGTAATTGCAAAAAAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       295113 19 -   1024465 TAAGGTAATTGCAAAAAAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       740433 19 -   3745603 TAAGGTAATTGCAAAAAAG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 924194 18 - 119751181 TAAGATAATTG-AAAAAAG
i micMur3.chr3              I 4 C 0
s proCoq1.NW_012149419v1       647664 18 -   2566024 TAAGATAATTG-AAAAAAG
i proCoq1.NW_012149419v1    I 223 C 0
s otoGar3.GL873530            6764778 19 -  36342412 TAAGATAATTGTTAAAAAG
i otoGar3.GL873530          I 16 C 0
s mm10.chr9                  55179334 17 + 124595110 TAAGATACTTG--GAAAAG
i mm10.chr9                 I 5 C 0
s canFam3.chr30                 49644 18 -  40214260 GAAGATAATAG-AAAAAGG
i canFam3.chr30             C 0 I 159
s dasNov3.JH569975              41944 18 -   2180720 GAAGATAATTG-AAAAGGG
i dasNov3.JH569975          C 0 C 0
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=129128.000000
s hg38.chr15_KI270850v1_alt    192331 16 +    430880 TTAGGATTTA----AACAAT
s panTro5.chr15              18001983 16 -  83230942 TTAGGATTTA----AACAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228285 16 -  99763055 TTAGGATTTA----AACAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290936 16 +    378907 TTAGGATTTA----AACAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146486 16 + 121039945 TTAGGATTTA----AACAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357409 16 + 169600520 TTAGGATTTA----AACAAT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353261 16 -   6271500 TTAGGATTTA----AACAAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813123 16 -   1987038 TTAGGATTTA----AACAAT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472970 16 -   9444221 TTGGGGTTTT----AAAAAT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509619 16 -   3282555 TTAGGATTTA----AAAAAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       295132 16 -   1024465 TTAGGATTTA----AAAAAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       740452 16 -   3745603 TTAGGATTTA----AAAAAT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 924212 16 - 119751181 TTAGGATTAA----AATAAT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       647682 16 -   2566024 TTAGGATTAA----AAGAAT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6764797 20 -  36342412 TTAGGATCCATCCTAAGAAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55179351 16 + 124595110 CCAGTACCAG----ATAGCT
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              41962 16 -   2180720 CTAGGATTTT----AAAAAT
i dasNov3.JH569975          C 0 C 0
e canFam3.chr30                 49662 159 -  40214260 I
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=56634.000000
s hg38.chr15_KI270850v1_alt    192347 5 +    430880 TCTGC
s panTro5.chr15              18001999 5 -  83230942 TCTGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228301 5 -  99763055 TCTGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290952 5 +    378907 TCTGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146502 5 + 121039945 TCTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357425 5 + 169600520 TCTGC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353277 5 -   6271500 TCTGC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813139 5 -   1987038 TCTGC
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472986 5 -   9444221 TCTGC
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509635 5 -   3282555 TCCGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       295148 5 -   1024465 TCTGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       740468 5 -   3745603 TCTGC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 924228 5 - 119751181 TCTTC
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       647698 5 -   2566024 TCTGC
i proCoq1.NW_012149419v1    C 0 I 903
s otoGar3.GL873530            6764817 5 -  36342412 TCTGT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55179367 5 + 124595110 TGGGC
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 49821 5 -  40214260 tctgt
i canFam3.chr30             I 159 C 0
s dasNov3.JH569975              41978 5 -   2180720 TCTGC
i dasNov3.JH569975          C 0 C 0
e manLeu1.NW_012105520v1       298355 4 -   1458659 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=60109.000000
s hg38.chr15_KI270850v1_alt    192352  8 +    430880 ATATATTT--
s panTro5.chr15              18002004  8 -  83230942 ATATGTTT--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228306  8 -  99763055 ATATGTTT--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290957  8 +    378907 ATATATTT--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146507  8 + 121039945 ATATATTT--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357430  8 + 169600520 ATGTATTT--
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353282  8 -   6271500 ATATATTT--
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813144  8 -   1987038 ATGTATTT--
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472991  8 -   9444221 ATATATTT--
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509640  8 -   3282555 ATAGATTT--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       295153  8 -   1024465 ATAGATTT--
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       740473  8 -   3745603 ATAGATTT--
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 924233  8 - 119751181 ATAGATTT--
i micMur3.chr3              C 0 I 549
s otoGar3.GL873530            6764822  8 -  36342412 ATAGATTT--
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55179372  8 + 124595110 ATAGATTT--
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 49826  8 -  40214260 gtgtgtgt--
i canFam3.chr30             C 0 I 22
s dasNov3.JH569975              41983 10 -   2180720 ATAGATTCAT
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=427373.000000
s hg38.chr15_KI270850v1_alt    192360 68 +    430880 GCGTATGTG-T-------AAGAACAGATAGTAT-GGGAAGGGAGGGAGCAGAATGATG---TGAA-----TAAAGATGTTGTTCT
s panTro5.chr15              18002012 68 -  83230942 GTATATATG-T-------AAGAACAGATAGTAT-GGGAAGGGAGGGAGCAGAATGATG---TGAA-----TAAAGATGTTATTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228314 68 -  99763055 GTATATATG-T-------AAGAACAGATAGTAT-GGGAAGGGAGGGAGCAGAATGATG---TGAA-----TAAAGATGTTATTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       290965 68 +    378907 GCATATATG-T-------AAGAACAGATAGTAT-GGGAAGGGAGGGAGCAGAATGATG---TGAA-----TAAAGATGTTGTTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146515 69 + 121039945 GTATATGTGTT-------AAGAACAGATAGTGT-GGGAAGGGAGGGAGCAGAATGATG---TGAA-----TAAAGATGTTGTTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357438 66 + 169600520 GTATATATG-T-------AAGAAC--ATAGTAT-GGGAATGGAGGCAGCAGAGTCATG---TGAA-----TAAAGATGTTGTTCT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353290 68 -   6271500 GTATATATG-T-------AAGAACAGATACTAT-GGGAAAGGAGGGAGCAGAATGGTG---TGAA-----TAAAGATTTTGTTCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813152 66 -   1987038 GTATATATG-T-------AAGAAC--ATAGTAT-GGGAATGGAGGCAGCAGGGTGATG---TGAA-----TAAAGATGTTGTTCT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7472999 68 -   9444221 GTATATATG-T-------AAAAACAGATAGTAT-GGAAAGGGAGGAAGCAGAATGATG---TGAA-----TAAAGATGTCGTTCT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509648 68 -   3282555 ATATATGTG-T-------AAGAATAGATAGTAT-GGGAAGGGAGGAAGCAGAATGATG---TGAA-----TAAAGATATTGGTCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       295161 68 -   1024465 ATATATGTG-T-------AAGAATAGATAGTAT-AGGAAGGGAGGAAGCAGAATGATG---TGAG-----TAAAGTTAGTGGTCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       740481 68 -   3745603 ATATATGTG-T-------AAGAATAGATAGTAT-GGGAAGGGAGGAAGCAGAATGATG---TGAA-----TAAAGATATTGGTCT
i aotNan1.NW_018511953v1    C 0 I 38
s otoGar3.GL873530            6764830 64 -  36342412 GTGTTTGTG-T-------AAGAGCAAATAATAT-GGGAAAGGAGGGAGCAGAATCAGG---TAAT-----TAAAGATGTTG----
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55179380 56 + 124595110 GTGTGTGTG-T-------AAGAACAAATGATAC-AGGAAAG--------AGAATGGTC---TGCA------AAAGATGGTCT---
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 49856 76 -  40214260 gtgtgtgtg-tctcatgaataaataaataaaatcttaaaaaaaaGTAATAGAAAAAGG---TTAGAATTTTAAAAGTTCT-----
i canFam3.chr30             I 22 C 0
s dasNov3.JH569975              41993 70 -   2180720 GTGTATGTT-T-------AAGAGCAGATGATAT-GGGAAAAGAGGAAGCAGAATGATGTGCTGAT-----TAAGGGTGTTGGTT-
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=69436.000000
s hg38.chr15_KI270850v1_alt    192428 20 +    430880 GCAGGGTATTATTCAAATTC
s panTro5.chr15              18002080 20 -  83230942 GTGGGGTATTATTCACATTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228382 20 -  99763055 GTGGGGTATTATTCAAATTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       291033 20 +    378907 GCGGGGTATTATTCAAATTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146584 20 + 121039945 GCGGGGTATTATTCAAATTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357504 20 + 169600520 GGGGGGTATTATTCAAATTA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353358 20 -   6271500 GTGGGGTATTATTCAAATTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813218 20 -   1987038 GGGGGGTATTATTCAAATTA
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7473067 20 -   9444221 GGGGGGTATTATTCAAATTC
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509716 16 -   3282555 -AGGGG---TATTCAAATTC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       295229 16 -   1024465 -AGGGG---TATTCAAAttc
i cebCap1.NW_016107979v1    C 0 I 56
s mm10.chr9                  55179436 19 + 124595110 -GCAGGTGTTTTTCAAATTC
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 49932 10 -  40214260 ----------GCATAGATTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              42063  6 -   2180720 GAGGGG--------------
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e aotNan1.NW_018511953v1       740549 38 -   3745603 I
e otoGar3.GL873530            6764894  0 -  36342412 C
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=18378.000000
s hg38.chr15_KI270850v1_alt    192448 4 +    430880 TTTT
s panTro5.chr15              18002100 4 -  83230942 TTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228402 4 -  99763055 TTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       291053 4 +    378907 TTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146604 4 + 121039945 TTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357524 4 + 169600520 TCTT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353378 4 -   6271500 TTTA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813238 4 -   1987038 TCTT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7473087 4 -   9444221 TTTT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509732 4 -   3282555 TTTT
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6764894 4 -  36342412 GCTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55179455 4 + 124595110 TTTT
i mm10.chr9                 C 0 I 350
s canFam3.chr30                 49942 4 -  40214260 CTTT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e aotNan1.NW_018511953v1       740549 38 -   3745603 I
e dasNov3.JH569975              42069 0 -   2180720 C
e cebCap1.NW_016107979v1       295245 56 -   1024465 I
e manLeu1.NW_012105520v1       298355 4 -   1458659 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=21971.000000
s hg38.chr15_KI270850v1_alt    192452 7 +    430880 GAAATTA
s panTro5.chr15              18002104 7 -  83230942 GAAATTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228406 7 -  99763055 GAAATTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       291057 7 +    378907 GAAATTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146608 7 + 121039945 GAAATTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357528 7 + 169600520 TAAATTA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353382 7 -   6271500 AAAAGTA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813242 7 -   1987038 TAAATTA
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7473091 7 -   9444221 GAAAttg
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509736 7 -   3282555 TTTCTtt
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6764898 7 -  36342412 AGAATTA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 49946 7 -  40214260 AAGAGTA
i canFam3.chr30             C 0 I 65
s dasNov3.JH569975              42069 7 -   2180720 AAAATTA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e aotNan1.NW_018511953v1       740549 38 -   3745603 I
e mm10.chr9                  55179459 350 + 124595110 I
e cebCap1.NW_016107979v1       295245 56 -   1024465 I
e manLeu1.NW_012105520v1       298355 4 -   1458659 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=5005.000000
s hg38.chr15_KI270850v1_alt    192459 1 +    430880 T
s panTro5.chr15              18002111 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228413 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       291064 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146615 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357535 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353389 1 -   6271500 T
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813249 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7473098 1 -   9444221 t
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509743 1 -   3282555 t
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6764905 1 -  36342412 T
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e aotNan1.NW_018511953v1       740549 38 -   3745603 I
e mm10.chr9                  55179459 350 + 124595110 I
e dasNov3.JH569975              42076 0 -   2180720 C
e canFam3.chr30                 49953 65 -  40214260 I
e cebCap1.NW_016107979v1       295245 56 -   1024465 I
e manLeu1.NW_012105520v1       298355 4 -   1458659 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=13058.000000
s hg38.chr15_KI270850v1_alt    192460 6 +    430880 TATTAG
s panTro5.chr15              18002112 6 -  83230942 TATTAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228414 6 -  99763055 TATTAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       291065 6 +    378907 TATTAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146616 6 + 121039945 CATTAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357536 6 + 169600520 TATTAt
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353390 6 -   6271500 TCTTAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813250 6 -   1987038 TATTAt
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7473099 6 -   9444221 tattat
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509744 6 -   3282555 tctttc
i saiBol1.JH378276          C 0 I 16
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e aotNan1.NW_018511953v1       740549 38 -   3745603 I
e mm10.chr9                  55179459 350 + 124595110 I
e dasNov3.JH569975              42076 0 -   2180720 C
e canFam3.chr30                 49953 65 -  40214260 I
e cebCap1.NW_016107979v1       295245 56 -   1024465 I
e otoGar3.GL873530            6764906 0 -  36342412 C
e manLeu1.NW_012105520v1       298355 4 -   1458659 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=44393.000000
s hg38.chr15_KI270850v1_alt    192466 8 +    430880 TAtttgag
s panTro5.chr15              18002118 8 -  83230942 tttttgag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228420 8 -  99763055 tttttgag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       291071 8 +    378907 TAtttgag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146622 8 + 121039945 Gttttgag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357542 8 + 169600520 tttttgag
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353396 8 -   6271500 tttttgag
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813256 8 -   1987038 tttttgag
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7473105 8 -   9444221 tttttgag
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509766 8 -   3282555 tttttgag
i saiBol1.JH378276          I 16 C 0
s cebCap1.NW_016107979v1       295301 8 -   1024465 tttttgag
i cebCap1.NW_016107979v1    I 56 C 0
s aotNan1.NW_018511953v1       740587 8 -   3745603 tttttgag
i aotNan1.NW_018511953v1    I 38 C 0
s dasNov3.JH569975              42076 3 -   2180720 -----GAG
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e mm10.chr9                  55179459 350 + 124595110 I
e canFam3.chr30                 49953 65 -  40214260 I
e otoGar3.GL873530            6764906 0 -  36342412 C
e manLeu1.NW_012105520v1       298355 4 -   1458659 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=533893.000000
s hg38.chr15_KI270850v1_alt    192474 112 +    430880 atagggt----cactatcacccagggtggagtgcagtggcatgatcatagcttactgcagcctcgaactcctgggaccaaacagtgcttctatttcagcctcctgagcacctgACA
s panTro5.chr15              18002126 112 -  83230942 atagggt----cgctgtcacccagggtggagtgcagtggcatgatcatagcttactgcagcctcaaactcccgggcccaaacaatgcttctatttcagcctcctgagcacctgACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228428 112 -  99763055 atagggt----tgctgtcacccagggtggagtgcagtggcatgatcatagcttactgcagcctcaaactcccgggcccaaacaatgcttctatttcagcctcctgagcacctgACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       291079 112 +    378907 atagggt----cactatcacccagggtggagtgcagtggcatgatcatagcttactgcagcctcaaactcctgggaccaaacagtgcttctatttcagcctcctgagcacctgaga
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146630 112 + 121039945 atagggt----cactgtcacccagggtggagtgcagtggcatgatcatagcttactgcagcctcaaactcctgggcccaaacaatgcttctgtttcagcctcctgagcacttgaga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357550 112 + 169600520 atagggt----ctctgtgacccaggctggagtgcagtggcatgatcataacttactgcagcctcaaactcctcggcccaaacgattcttctatttcagccttctgagcacctgaga
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353404 112 -   6271500 acagggt----cactgtcacccaggttggagtgcagtgacgtgatcatagcttactgcagcctgaaagtcctgggcccaaacgatccttctatttcagcctcctgagcacctgaga
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813264 112 -   1987038 atagggt----ctctgtgacccaggctggagtgcagtggcatgatcataacttactgcagcctcaaactcctcagcccaaacgattcttctatttcagccttctgagcacctgaga
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7473113 112 -   9444221 atagggt----ccctgtcactcaggctggagtgcagtggcatgatcatagtttactgcagcctcaaattcctgggcccaaacgagccttctatttcagcctcccgagcacctgAAA
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509774 115 -   3282555 atagggtctcactctgaca-ccaggctggagtacagtggtatgatcatagttcactgcagcctcagactcctggactcaaatgatcctcctaactcaacttcctgaggacctaaga
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       295309 116 -   1024465 atagggtctcactctgacacccaggctggactatagtggtatgatcgtagttcactgcagcctcagactccttaactcaaatgatcctcctatctcaacctcctgaggacctaaga
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       740595 116 -   3745603 atagggtctcactctgacacccaggctggagtacagtagtatgatcgtagttcactgcagcctcagactcctgaacccaaatgatcctcctatctcaacctcctgaggacctaaga
i aotNan1.NW_018511953v1    C 0 C 0
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e mm10.chr9                  55179459 350 + 124595110 I
e dasNov3.JH569975              42079   0 -   2180720 C
e canFam3.chr30                 49953  65 -  40214260 I
e otoGar3.GL873530            6764906   0 -  36342412 C
e manLeu1.NW_012105520v1       298355   4 -   1458659 I
e chlSab2.chr29              21064964   4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=7661.000000
s hg38.chr15_KI270850v1_alt    192586 2 +    430880 TC
s panTro5.chr15              18002238 2 -  83230942 TC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228540 2 -  99763055 TC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       291191 2 +    378907 TC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146742 2 + 121039945 TC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357662 2 + 169600520 TA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353516 2 -   6271500 TC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813376 2 -   1987038 TA
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7473225 2 -   9444221 TC
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509889 2 -   3282555 TA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       295425 2 -   1024465 TA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       740711 2 -   3745603 TA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6764906 2 -  36342412 TC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 50018 2 -  40214260 TC
i canFam3.chr30             I 65 C 0
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e mm10.chr9                  55179459 350 + 124595110 I
e dasNov3.JH569975              42079 0 -   2180720 C
e manLeu1.NW_012105520v1       298355 4 -   1458659 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=1432394.000000
s hg38.chr15_KI270850v1_alt    192588 233 +    430880 AAATTCTTTTTCTAACTTATTTTTAAGTTATTAACATCA-ATAGGTGCTTACTACATAAAACCATAAACTTGGAAATCAGGGGAAAGCACCA----AATGTCTCC-AGAGATAACAACTAAAATTAATTGAAATTAACATTTCAATGTAAGTTGTTCTGG------TCTTTTTCTGTGC-TTATTTCAGCATAATTGAAATTCT-CTCTATTC-CTTTGTGTAATC-CATTTTTCATTTCAAAGTTTT--T
s panTro5.chr15              18002240 233 -  83230942 AAATTCTTTTTCTAACTTATTTTTAAGTTATTAGCATCA-ATAGGTGCTTACTACATAAAACCATAAACTTGGAAATTAGGGGAAAGCACCA----AATGTCTCC-AGAGATAACAACTAAAATTAATTGAAATTAACATTTCAATGTAAGTTGTTCTGG------TCTTTTTCTGTGC-TTATTTCAGCATAATTGAAATTCT-TTCTATTC-CTTTGTGTAATC-CATTTTTCATTTCAAAGTTTT--T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228542 233 -  99763055 AAATTCTTTTTCTAACTTATTTTTAAGTTATTAGCATCA-ATAGGTGCTTACTACATAAAACCATAAACTTGGAAATTAGGGGAAAGCACCA----AATGTCTCC-AGAGATAACAACTAAAATTAATTGAAATTAACATTTCAATGTAAGTTGTTCTGG------TCTTTTTCTGTGC-TTATTTCAGCATAATTGAAATTCT-TTCTATTC-CTTTGTGTAATC-CATTTTTCATTTCAAAGTTTT--T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       291193 233 +    378907 AAATTCTTTTTCTAACTTATTGTTAAGTTATTAACATCA-ATAGGTGCTTACTACATAAAACCATAAACTTGGAAATCAGGGGAAAGCACCA----AATGTCTCC-AGAGATAACAACTAAAATTAATTGAAATTAACATTTCAATGTAAGTTGTTCTGG------TCTTTTTCTGTGC-TTATTTCAGCATAATTGAAATTCT-TTCTATTC-CTTTGTGTAATC-CATTTTTCATTTCAAAGTTTT--T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146744 233 + 121039945 AAATTCTTTTTCTAACTTATTTTTAAATTATTAACATCA-ATAGGTGCTTACTACATAAAACCATACACTTGGAAATTAGGGGAAAGTACCA----AATGTCTCC-AGAGATAACAACTAAAATTAATTGAAATTAACATTTCAATATAAGTTCTTCTGG------TCTTTTTCTGTGC-TTATTTCAGCATAATTGAAATTCT-TTCCATTC-CTTTGTGTAATC-CATTTTTCATTTCAAAGTTTT--T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357664 233 + 169600520 AAATTCTTTCTCTAACTTATATTTTAGTTATTAATGTCA-ATAGATGCTTACTACATAAAATCATAAACTTGGAAATTAGGGGAAAGCACCA----AATGTCTCC-AGAGATAACAACTAAAATTAATTGAAATCAACCTTTCAATATAAGTTCTTCTGG------TCTTTTTCTGTGC-TTATTTCAGCATAATTGAAATTCT-TTCTATTC-CTTTGTGTATTC-CATTTTTCATTTCAAAGTTTT--T
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353518 232 -   6271500 AAATGCTTTTTTTAACTTAATTTTAAGTTGTTAACATCA-ATAGATGCTTCCTGCATAAAACCATAAACCTGGAAATTAGGGG-AAGCACCA----AATCTCTCC-AGAGATAATAACTAAAATTAATTGAAATTAACATTTCAATATGAGTTCTTCTGG------TCTTTTTCTGTGC-TTATTTCAGCATAATTAAAATTCT-TTCTATTC-CTTTGTGTATTG-CATTTTTCATTTCAAAGTTTT--T
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813378 233 -   1987038 AAATTCTTTCTCTAACTTATATTTTAGTTATTAATGTCA-ATAGATGCTTACTACATAAAATCATAAACTTGGAAATTAGGGGAAAGCGCCA----AATGTCTCC-AGAGATAACAACTAAAATTAATTGAAATTAACCTTTCAATATAAGTTCTTCTGG------TCTTTTTCTGTGC-TTATTTCAGCATAATTGAAATTCT-TTCTATTC-CTTTGTGTATTC-CATTTTTCATTTCAAAGTTTT--T
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7473227 231 -   9444221 AAATTCTTTTTCTAACTCATTTTTTAGTTATTAACATCA-ATAGGTGCTTACTACATAAAACCATAAACT--GCAATTAGGGGAAAGCACCA----AATATCTCC-AGAGATAACAACTAAAATTAATTGAAATTAACATTTCAATATAAGTTCTTCTGG------TCTTTTCCTGTGC-ATATTTCAGCATAATTGAAATTCT-TTCTATTC-CTTTGTGTACTC-CATTTTTCATTTCAAAGTTTT--T
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             509891 230 -   3282555 AAATTCTTTTTGTAACTTATTTTCTAGTTACAAATGTCA-ATAGATGCTTACTACATGAA-------ACTTGGAAATTAGGGGAAGGCACTA----AATGTCTCC-AGAGATAACAACTAAAATTAACTGAAACTAACATTTAAATATAAGTTCATCTGG--TCTTTCTTTTTTTGTGC-ATATGTCAGCATAATTGAAATTCT-TTGTACTC-TTTTTTGTATTC-TGTTTTTCATTTTAAAGTTTT--T
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       295427 231 -   1024465 AAATTCTTTTTGTAACATATTTTCTAGTTACAAATGTCA-ATAGATGCTTACTACATAAA-------ACTTGGAAATTAGGGGATAGCACTA----AATGTCTCCGAGAAATAACAACTAGAATTAACTGGAACTAACATTTAAATATAAGTTCTTCTTG--TCTTTCTTTTTCTGTGT-GTATGTCGGCATAATTGAAATTCT-TTCTACTC-TTTTATGTATTC-TGTTTTTCATTTTAAAGTTTT--T
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       740713 231 -   3745603 AAATTCTTTTTGTAACTTATTTTCTAGTTACAAATGTCA-ATAGATGCTTACTACATAAA-------ACTTGGAAATTAGGGGAAAGCACTA----AATGTCTCC-AGAGATAACAACTAAAATTAACTGAAACTAACATTTAAATATATGTTCTTCTGG--TCTTTCTTTTTCTGTGC-ATATGTTGGCGTAATTGAAATTCT-TTCTACTCTTTTTTTGTATTC-TGTTTTTCATTTTAAAGTTTT--T
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6764908 195 -  36342412 AAAATTTTTTTCTGAC-----TTCTAATTGGAAAAGTCAGAAATATGCTTACTACAGAAA-------ATTTGGAAAATAAGGAAAAGTATTA----AATGTCTC--AGA--------------------------AACATTTTAGTATAAGTCCTCA---------TCTTTGTCTACACTTTATTTTGGTATAATTGAGATTCT-GTATATTC-TTTTTTGTATTC-TGATTTTCATTTCAAAGTTTTTAT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 50020 213 -  40214260 AAATTCCTCTTCTGACTTTTCTCCTAATTATAAGAATCA-GTAGGTGCTCAGTATAGAAA-------ACTGAGAAAAGAAGGAAGAGCACTA----AATGTCTCT-AGC------------ATTTAATTG---TTATTATTTCACTATATGTCCTTCTAGTCTCTTTTCTTTTCTGTGC-TTATTTTAGTGTGATTGAGAT-----TATATTC-AGTTTTGTATTT-TGTTTTTCATTGCATTATTTT--T
i canFam3.chr30             C 0 I 1022
s dasNov3.JH569975              42079 223 -   2180720 AAATTCTTTCTCTAATTTTTTCCCTAATTATAAAAATCA-GTAGCATCTCACTATATAAA-------TTTTGGAAAATAAGGGAAAGCACTGAAACAATGCCTCC-AGAGTTAACAACCA-------------TTACCATTTCACTATATTTCATTCTAG--TCTTTCTTTTTCTCTGC-TTATTTTGGCATACTTGGGATTCTACTGTGTTC-AACTTTACATTTATGTTTTTCCTTTCAAAGTCTT--A
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e mm10.chr9                  55179459 350 + 124595110 I
e manLeu1.NW_012105520v1       298355   4 -   1458659 I
e chlSab2.chr29              21064964   4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=30178.000000
s hg38.chr15_KI270850v1_alt    192821 5 +    430880 CGATA
s panTro5.chr15              18002473 5 -  83230942 CGATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228775 5 -  99763055 CGATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       291426 5 +    378907 CGATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146977 5 + 121039945 TGATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357897 5 + 169600520 TGATA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353750 5 -   6271500 CAATA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813611 5 -   1987038 TGATA
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7473458 5 -   9444221 CAGTA
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             510121 5 -   3282555 TGATA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       295658 5 -   1024465 TGATA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       740944 5 -   3745603 TGATA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6765103 5 -  36342412 TGATA
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              42302 5 -   2180720 TGATG
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e mm10.chr9                  55179459 350 + 124595110 I
e canFam3.chr30                 50233 1022 -  40214260 I
e manLeu1.NW_012105520v1       298355 4 -   1458659 I
e chlSab2.chr29              21064964 4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=310055.000000
s hg38.chr15_KI270850v1_alt    192826 69 +    430880 CAGGAGA-AA---TTATGCCGTGTTGATAtttcagtggctgcttaatagttcatggaattgagttaactgttt
s panTro5.chr15              18002478 69 -  83230942 CAGGAGA-AA---TTATGCCGTGTTGATATTTCAGTGGCTTCTTAATAGTTCATGGaattgagttaactgttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228780 69 -  99763055 CAGGAGA-AA---TTATGCCGTGTTGATATTTCAGTGGCTTCTTAATAGTTCATGGaattgagttaactgttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       291431 69 +    378907 CAGGAGA-AA---TTATGCCATGTTGATAtttcagtggctgcttaatagttcatggaattgagttaactgttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102146982 64 + 121039945 CAGGAGA-AA---TTATGCTGTGTTGGTATTTCAGTGGCTTCCTAATAGTTCATG-----GAGTTAACTGTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357902 64 + 169600520 CAGGAGA-AA---TTATGCTGTGTTGGTATTTTGGTGGCCTCTTAATAGTTAATG-----GAGTTAACTGTTT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353755 69 -   6271500 CAGGAGA-AA---TTATGCTGTATTGGTAtttcagtggcctcttaatatttcatggacttgagttaactattt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813616 64 -   1987038 CAGGAGA-AA---TTATGCTGTGTTGGTATTTCGGTGGCCTCTTAATAGTtaatg-----gagttaactgttt
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7473463 69 -   9444221 CAGGAGA-AA---TTATGCTGTGTTGATATTTCAGTGGCCTGTTAATATTTCATGGAATTGAGTTAACTGTTT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             510126 47 -   3282555 CAGGAGA-AA---TTATGCTATGTTGGTATTTCAGTGGCCTCTTAATAAT----------------------T
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       295663 47 -   1024465 CAGGAGA-AA---TTATGCTATGTTGGTATTTCAGTGGCCTCTTAATAAT----------------------T
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       740949 47 -   3745603 CAGGAGA-AA---TTATGCTATGTTGGTATTTCAGTGGCCTCTTAATAAT----------------------T
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6765108 69 -  36342412 TAGGAAATAA---TTATGCTATATTGATATTT-AATGATCTTCTGGTATTCCATGGAATTGGAGTTACCATTT
i otoGar3.GL873530          C 0 I 265
s mm10.chr9                  55179809 63 + 124595110 caaaaaa-aa-----aaGGTGATTTAGTATCCTAATGACCCCATAATGGATGATC-CTTTGAATTAATTG---
i mm10.chr9                 I 350 C 0
s dasNov3.JH569975              42307 63 -   2180720 CAGAAGA-AATGGTTTTGTTGGGTTGACATTCTTATGGCTTTTTAGTATTCCac---------ttaactgatc
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e canFam3.chr30                 50233 1022 -  40214260 I
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=1078933.000000
s hg38.chr15_KI270850v1_alt    192895 199 +    430880 tgctatttttgcacatgcagattttgtgtttgtttttgtggttgcaaggtt-gaaataggtattcttatgcctaaatttgtgtttacctcttagactagtttcttgtaatacaattctagaagtcgagtttctggaacaaactatgaacagttaaggttcttgacacctgctgctaaactgTTTCAAAGGTTCCTCTT---AG
s panTro5.chr15              18002547 202 -  83230942 tgctatttttgcacatgcagattttgtgtttgtttttgtggttgcaaggtt-gaaataggtatccttatgcctaaatttgtgtttacatcttagactagtttcttgtaatacagttctagaggtcgagtgtctggaacaaactatgaacacttaaggttcttgacacctgctgctaaactgtttcaaaggttCCTCTTAAGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17228849 202 -  99763055 tgctatttttgcacatgcagattttgtgtttgtttttgtggttgcaaggtt-gaaataggtatccttatgcctaaatttgtgtttacatcttagactagtttcttgtaatacagttctagaggtcgagtgtctggaacaaactatgaacacttaaggttcttgacacctgctgctaaactgtttcaaaggttCCTCTTAAGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       291500 199 +    378907 tgctatttttgcacatgcagattttgtgtttgtttttgtggttgcaaggtt-gaaataggtatccttatgcctaaatttgtgtttacatcttagactagtttcttgcaatacagttctagaagtcgagtgtctggaacaaactatgaacagttaagggtcttgacacctgctgctaaactgTTTCAAAGGTTCCTCTT---AG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102147046 202 + 121039945 CGCTGTTTTTGCACGTGCAGATTTTGTGTTTGTTTTTGTGGTTGCaaggtt-gaaataggtatccttatgcctaaatttgtgtttacatcttagactagtttcttgtaatacagttctagaagtcgagtttctggaacaaactatgaacagttaaggttcttgacacctgctgctaagctgtttcaaaggttCCTCTTAAGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60357966 198 + 169600520 TGCTATTTTTGCACATGCAGATTTTG----TGTTTTTGTGGTTGCAAGGTT-GAAACAGGTatccttatgcctaaatttgtgtttacatcttagactggtttcttggaatataattctagaatttgagtttctggaacaaactatggacagttaaggttcttgacacctgctgctacactgTTTCAAAGGTGCCTCCTAAGAG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5353824 202 -   6271500 tgctatttttgcacatgcagattttgtgtttgtttttctggttgcaaggtt-ggaatagatatccttatgcctaaatttgtgcttacatcttagactagtttcttctaatacaattctagaagtcgagtttctggaacaaactatgaacagttaaggttcttgacacctgctgccaaactgtttcaaaggttTCTCTTAAGAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813680 198 -   1987038 tgctatttttgcacatgcagattttg----tgtttttgtggttgcaaggtt-gaaacaggtatccttatgcccaaatttgtgtttacatcttagactggtttcttggaatacaattctagaatttgagtttctggaacaaactatggacagttaaggttcttgacacctgctgctacactgTTTCAAAGGTGCCTCCTAAGAG
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7473532 202 -   9444221 TGCTATTTTTGCTCATGCATATTTTGTGTTTATTTTTGTGGTAGCAAGGTT-GAAGTAGGTatccttatgcctaaatttgtgtttacatcttggactagtgtgttggaatacaattctaggactcgagtttctggaacaaactatgaacagttatagttcttgacacctgctgctaaactgtctcaaaggttCCTCTTAAGAG
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             510173 194 -   3282555 GCCTATTTTTGCACATGGAGATTTTGTGTTTGTTTTTGTGGTTGCAATATTGAAAATAGGTGTCTTTCTGTCtaaatttgtgtctacagttta-----ggttcttagaatacaattctagaagttgagttcctggaacaaactatgaacacttaaggttctcgatgcct-ctgctaaactgTTTCACAGGTTCCTCTTAG---
i saiBol1.JH378276          C 0 I 3
s cebCap1.NW_016107979v1       295710 194 -   1024465 TGCTATTTTTGCACATGGAGATTTTGTGTTTGTTTTTGTGGTTGCAAGATT-AAAATAGGTatctttatgtctaaatttgtgtctacagttta-----gtttcttagaatacagttctagaagttgagttcctggaacaaactacgaacacttaaggttcttgatgcctgctgctaaactgcttcaaaggttCCTCTTAG---
i cebCap1.NW_016107979v1    C 0 I 8
s aotNan1.NW_018511953v1       740996 188 -   3745603 TGCTATTTTTACACATGGGGATTTTGTG------TTTGTGGTTGCAAGATT-GAAATAGGTatctttatgtctaaatttgtgtctacagttta-----gtttcttagaattcaattctagaagttgaggtcctggaacaaactatgaacacttaaggttcttgatgcctgctgctaaactgtttcaaaggttCCTCTTAG---
i aotNan1.NW_018511953v1    C 0 I 8
s mm10.chr9                  55179872  96 + 124595110 ----GTTTTTGTATCTGTAGATTTT--------TTTTGTACTTATCAGAAC-GAGATGGGTATAATTATGCCTAAATTATTGTTCATA-----------TTTCTTAGAATAAAACTCTag-----------------------------------------------------------------------------------
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              42370 197 -   2180720 tgctgtttttgaacaggcagatttcg--ttagtttttgtgattttagggtt-gaaatgaacctttttatgtctaaatctgtgtccacattttcgactagatttgtagactagatttctagaagtcacattactggaacaacatatgaacagttaaagctcttaataccagctatgaaattgtttcaaaagTTCCTCTTAA---
i dasNov3.JH569975          C 0 I 7
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e canFam3.chr30                 50233 1022 -  40214260 I
e otoGar3.GL873530            6765177 265 -  36342412 I
e manLeu1.NW_012105520v1       298355   4 -   1458659 I
e chlSab2.chr29              21064964   4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=50155.000000
s hg38.chr15_KI270850v1_alt    193094 11 +    430880 GAGATTTAAAA
s panTro5.chr15              18002749 11 -  83230942 GAGATTTAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229051 11 -  99763055 GAGATTTAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       291699 11 +    378907 GAGATTTAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102147248 11 + 121039945 GAGATTTAAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60358164 11 + 169600520 GAGATTTAAAA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5354026 11 -   6271500 GAGATTTAAAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813878 11 -   1987038 GAGATTTAAAA
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7473734 11 -   9444221 GAGATTTAAAA
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             510370 11 -   3282555 GAAATATAAGG
i saiBol1.JH378276          I 3 C 0
s dasNov3.JH569975              42574 11 -   2180720 GAGATTTAAAA
i dasNov3.JH569975          I 7 C 0
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e aotNan1.NW_018511953v1       741184  8 -   3745603 I
e mm10.chr9                  55179968  0 + 124595110 C
e canFam3.chr30                 50233 1022 -  40214260 I
e cebCap1.NW_016107979v1       295904  8 -   1024465 I
e otoGar3.GL873530            6765177 265 -  36342412 I
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=448737.000000
s hg38.chr15_KI270850v1_alt    193105 150 +    430880 GATGGCTTggccaggc-gtggtgtctcacgctggtaatcccagcactttgggaggctgaggtgggcagatcacttgacgtcataagtttgagaccagcctggccaacatgttgaaaccctgtctctactaaaaatacaaagaaattagctg
s panTro5.chr15              18002760 150 -  83230942 GATGGCTTggctgggc-gtggtgtctgatgccagtaatcccagcactttgggaggctgaggtgggcagatcacttgacgtcataagtttgagaccagcctggccaacatgttgaaaccctgtctctattaaacatacaaagaaattagctg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229062 150 -  99763055 GATGGCTTggctgggc-gtggtgtctgatgccagtaatcccagcactttgggaggctgaggtgggcagatcacttgacgtcataagtttgagaccagcctggccaacatgttgaaaccctgtctctattaaacatacaaagaaattagctg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       291710 150 +    378907 GATGGCTTggccgggc-atggtgtctcacgctggtaatcccagcactttgggaggctgaggtgggcagatcacttgacgtcagaagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaagaaattagctg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102147259 150 + 121039945 GATGGCTTggccgggc-gtggtttctcacgctggtaatcccagcactttgggaggctgaggtgggcagatcacttgacgtcagaagtttgagaccagcctggccaacatgttgaaatcctgtctctactaaaaatacaaagaaattagctg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60358175 150 + 169600520 GATGGCTTggccgggt-gtggtgtctcgcgctggtaatcccagcactttgggaggctgaggtgggcggatcacctgaggtcagaagtttgagactagactggccaacatggtgaaaccctgtctctactaaaagtacaaagaaattacctg
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5354037 146 -   6271500 GATGGCTTggccgggc-gtggtgtctcatgccagtaatcccagcactttgggaggctgaggtgggcagatcacttgatgtcagaagtttgagacaatcctgg-caacatggtgaaaccctgtctctcctcaaat--caaagaaattagct-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1813889 150 -   1987038 GATGGCTTggctgggt-gtggtgtctcacgctggtaatcctagcactttgggaggctgaggtgggcggatcacctgaggtcagaagtttgagactagactggccaacatggtgaaaccctgtctctactaaaagtacaaagaaattacctg
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7473745 150 -   9444221 GATGGCTTGTccaggc-gtggtggctcatgccgataataccagcactttgggagaccgaggtgggtggatcacttgaggtcagaagtttgagagcagcctggccaacatggtaaaaccctgtctctactaaaaatgtaaacaaattagctg
i colAng1.NW_012112253v1    C 0 C 0
s mm10.chr9                  55179968 130 + 124595110 ----------ctgggcagtggtggtgcacgcctttaatcccagcac-ttgggaggcagaggtaaacgaatttct---------gagttagaggccagcctggtctacagagtgagttccagga-cagccagggctacacagagaaaccctg
i mm10.chr9                 C 0 I 128
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e aotNan1.NW_018511953v1       741184   8 -   3745603 I
e dasNov3.JH569975              42585   0 -   2180720 C
e canFam3.chr30                 50233 1022 -  40214260 I
e cebCap1.NW_016107979v1       295904   8 -   1024465 I
e otoGar3.GL873530            6765177 265 -  36342412 I
e manLeu1.NW_012105520v1       298355   4 -   1458659 I
e chlSab2.chr29              21064964   4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e saiBol1.JH378276             510381   0 -   3282555 C

a score=199114.000000
s hg38.chr15_KI270850v1_alt    193255 75 +    430880 ggcgtggtggtgtacgtctgtaatcccagctactcaggagactgaggcatgagaatcacttgaacctgggaggca
s panTro5.chr15              18002910 75 -  83230942 ggtgtggcagtgtacgtctgtaatcccagctactcaggagactgaggcatgagaatcacttgaacctgggaggca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229212 75 -  99763055 ggtgtggcagtgtacgtctgtaatcccagctactcaggagactgaggcatgagaatcacttgaacctgggaggca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       291860 75 +    378907 ggcgtggtggtgtacgtctgtaattccagctactcaggagactgaggcatgagaatcacttgaacctgggaggca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102147409 75 + 121039945 ggcgtggtggtgtacgtctgtaatcccagctactcaggagactgaggcgtgagaatcacttgaacctgggaggca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60358325 75 + 169600520 ggcttggtggtgtacatctgtaatcccagctactcaggagactggggcatgagaatcacttgaacctgggaggca
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5354183 68 -   6271500 ggcatg--tgtgta-agttgtaat-ccagctacccaggacgatggcgcatgagaat--cctgaacctggga-gca
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1814039 75 -   1987038 ggcttggtggtgtacatctgtaatcccagctactcaggagactggggcatgagaatcacttgaacctgggaggca
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7473895 70 -   9444221 ggtatggtggtgtacg-----aatcccagctactcaggagactgaggcatgagaatcacttgaacctgggaggca
i colAng1.NW_012112253v1    C 0 C 0
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e aotNan1.NW_018511953v1       741184  8 -   3745603 I
e mm10.chr9                  55180098 128 + 124595110 I
e dasNov3.JH569975              42585  0 -   2180720 C
e canFam3.chr30                 50233 1022 -  40214260 I
e cebCap1.NW_016107979v1       295904  8 -   1024465 I
e otoGar3.GL873530            6765177 265 -  36342412 I
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e saiBol1.JH378276             510381  0 -   3282555 C

a score=113082.000000
s hg38.chr15_KI270850v1_alt    193330 45 +    430880 gaggttgcagtgagcagagatcgcgccactctactcctgcctgag
s panTro5.chr15              18002985 45 -  83230942 gaggttgcagtgagcggagattgccccactatactcctgcctaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229287 45 -  99763055 gaggttgcagtgagcagagattgccccactatactcctgcctaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       291935 45 +    378907 gaggttgcagtgagcagagatcacgccactatactcctgcctgag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102147484 45 + 121039945 gaggttgcagtgagcagagattgccctactatactcctgcctgag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60358400 45 + 169600520 gaggttgcagtgagcagagattgcccaactatactcccgcctggg
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5354251 42 -   6271500 gaggttacagtgagcagagattgccc-actata--ccctcctgag
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1814114 45 -   1987038 gaggttgcagtgagcagagattgcccaactatactcccgcctggg
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7473965 45 -   9444221 gagtttgccgtgagcagagatcaccgcactatactcccgcctggg
i colAng1.NW_012112253v1    C 0 C 0
s otoGar3.GL873530            6765442 22 -  36342412 AAGGTTGAAATGGGCATTGTTT-----------------------
i otoGar3.GL873530          I 265 C 0
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e aotNan1.NW_018511953v1       741184  8 -   3745603 I
e mm10.chr9                  55180098 128 + 124595110 I
e dasNov3.JH569975              42585  0 -   2180720 C
e canFam3.chr30                 50233 1022 -  40214260 I
e cebCap1.NW_016107979v1       295904  8 -   1024465 I
e manLeu1.NW_012105520v1       298355  4 -   1458659 I
e chlSab2.chr29              21064964  4 -  24206276 I
e macFas5.chr7              107345402 100 - 171882078 I
e saiBol1.JH378276             510381  0 -   3282555 C

a score=162357.000000
s hg38.chr15_KI270850v1_alt    193375 58 +    430880 tgacagagtgagactctatcttacaaaaataaaataaaataaa-ta--aagaaGTAAATAA
s panTro5.chr15              18003030 59 -  83230942 tgacagagtgagactctatcgtacaaaaaaaaaataaaataaaTTA--AAGAAGTAAATAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229332 58 -  99763055 tgacagagtgagactctatcgtacaaaaa-aaaataaaataaaTTA--AAGAAGTAAATAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       291980 58 +    378907 tgacagagtgagactctatcttacaaaaataaaataaaataaa-ta--aagaaGTAAATAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102147529 59 + 121039945 tgacagagtgagactctatcttacaaaaataaaataaaataaaata--aagaaGTAAATAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60358445 58 + 169600520 tgacagagtgagactctatcttaaaaaaataaaataaaTTGAA-TA--AAGAAGTAAATAA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5354293 60 -   6271500 tgaacgagtgagactctatcccaaaaacataaaagaaGATAAG-TAATAAGAAGTAAATAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1814159 58 -   1987038 tgacagagtgagactctatcttaaaaaagtaaaataaaTTGAA-TA--AAGAAGTAAATAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21064968 54 -  24206276 TGACAGAGTGAGACTCTATATTTAAAC---Aaaataaattaaa-t---aaaaagtaaataa
i chlSab2.chr29             I 4 C 0
s manLeu1.NW_012105520v1       298359 54 -   1458659 TGACAGAGTGAGACTCTATATtaaaaa---aaaatgaattaaa-t---aaaaagtaaataa
i manLeu1.NW_012105520v1    I 4 C 0
s colAng1.NW_012112253v1      7474010 54 -   9444221 tggcagagtgagac-ctatttttaaaaagtaaacaaaaaTTA------AAGAAGTAAATAA
i colAng1.NW_012112253v1    C 0 C 0
s otoGar3.GL873530            6765464 19 -  36342412 ---CAAAGT-------TCTTATACAAGAC--------------------------------
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e aotNan1.NW_018511953v1       741184  8 -   3745603 I
e mm10.chr9                  55180098 128 + 124595110 I
e dasNov3.JH569975              42585  0 -   2180720 C
e canFam3.chr30                 50233 1022 -  40214260 I
e cebCap1.NW_016107979v1       295904  8 -   1024465 I
e macFas5.chr7              107345402 100 - 171882078 I
e saiBol1.JH378276             510381  0 -   3282555 C

a score=7501.000000
s hg38.chr15_KI270850v1_alt    193433 1 +    430880 --A
s panTro5.chr15              18003089 1 -  83230942 --A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229390 1 -  99763055 --A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292038 1 +    378907 --A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102147588 1 + 121039945 --A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60358503 1 + 169600520 --A
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5354353 1 -   6271500 --A
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1814217 1 -   1987038 --A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065022 1 -  24206276 --a
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298413 1 -   1458659 --a
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474064 1 -   9444221 --A
i colAng1.NW_012112253v1    C 0 C 0
s cebCap1.NW_016107979v1       295912 1 -   1024465 --A
i cebCap1.NW_016107979v1    I 8 C 0
s aotNan1.NW_018511953v1       741192 1 -   3745603 --A
i aotNan1.NW_018511953v1    I 8 C 0
s otoGar3.GL873530            6765483 3 -  36342412 TTA
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e mm10.chr9                  55180098 128 + 124595110 I
e dasNov3.JH569975              42585 0 -   2180720 C
e canFam3.chr30                 50233 1022 -  40214260 I
e macFas5.chr7              107345402 100 - 171882078 I
e saiBol1.JH378276             510381 0 -   3282555 C

a score=1442.000000
s hg38.chr15_KI270850v1_alt    193434 5 +    430880 -TAAAT
s panTro5.chr15              18003090 5 -  83230942 -TAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229391 5 -  99763055 -TAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292039 5 +    378907 -TAAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102147589 5 + 121039945 -TAAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60358504 5 + 169600520 -AAAAT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5354354 5 -   6271500 -TTAAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1814218 4 -   1987038 --AAAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065023 5 -  24206276 -taaat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298414 5 -   1458659 -taaat
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474065 1 -   9444221 -----T
i colAng1.NW_012112253v1    C 0 C 0
s cebCap1.NW_016107979v1       295913 5 -   1024465 -TAAAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       741193 5 -   3745603 -TAAAG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6765486 3 -  36342412 -GAA--
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55180226 5 + 124595110 TTAAA-
i mm10.chr9                 I 128 C 0
e micMur3.chr3                 924241 549 - 119751181 I
e proCoq1.NW_012149419v1       647703 903 -   2566024 I
e dasNov3.JH569975              42585 0 -   2180720 C
e canFam3.chr30                 50233 1022 -  40214260 I
e macFas5.chr7              107345402 100 - 171882078 I
e saiBol1.JH378276             510381 0 -   3282555 C

a score=78152.000000
s hg38.chr15_KI270850v1_alt    193439 6 +    430880 GATGGC
s panTro5.chr15              18003095 6 -  83230942 GATGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229396 6 -  99763055 GATGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292044 6 +    378907 GATGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102147594 6 + 121039945 GATGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60358509 6 + 169600520 GATGGT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5354359 6 -   6271500 GATGGT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1814222 6 -   1987038 GATGGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065028 6 -  24206276 GATGTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298419 6 -   1458659 GATGTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474066 6 -   9444221 GATGGC
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             510381 6 -   3282555 GATGGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       295918 6 -   1024465 GATGGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       741198 6 -   3745603 GATGGC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 924790 6 - 119751181 GATGGC
i micMur3.chr3              I 549 C 0
s proCoq1.NW_012149419v1       648606 6 -   2566024 GATGGC
i proCoq1.NW_012149419v1    I 903 C 0
s otoGar3.GL873530            6765489 6 -  36342412 GATGAC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55180231 6 + 124595110 GGTGGC
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              42585 6 -   2180720 GATGAT
i dasNov3.JH569975          C 0 C 0
e canFam3.chr30                 50233 1022 -  40214260 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=94912.000000
s hg38.chr15_KI270850v1_alt    193445 9 +    430880 TTATTTCAT
s panTro5.chr15              18003101 9 -  83230942 TTATTTCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229402 9 -  99763055 TTATTTCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292050 9 +    378907 TTATTTCAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102147600 9 + 121039945 TTATTTCAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60358515 9 + 169600520 TTATTTTGT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5354365 9 -   6271500 CTATTTCAT
i macNem1.NW_012011056v1    C 0 I 306
s cerAty1.NW_012002657v1      1814228 9 -   1987038 TTATTTTGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065034 9 -  24206276 TTATTTCAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298425 9 -   1458659 TTATTTCAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474072 9 -   9444221 TTATTTCAT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             510387 9 -   3282555 TTATTTTGT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       295924 9 -   1024465 TTATTTTGT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       741204 9 -   3745603 TTATTTTGT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 924796 9 - 119751181 TTATTTGGT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       648612 9 -   2566024 TTATTTGGT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6765495 8 -  36342412 TTATTTGA-
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55180237 9 + 124595110 AGATTTGAT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 51255 9 -  40214260 ttttttttt
i canFam3.chr30             I 1022 C 0
s dasNov3.JH569975              42591 9 -   2180720 TTATTTAAT
i dasNov3.JH569975          C 0 C 0
e macFas5.chr7              107345402 100 - 171882078 I

a score=151686.000000
s hg38.chr15_KI270850v1_alt    193454 13 +    430880 AATAGTTGTGACT
s panTro5.chr15              18003110 13 -  83230942 AATAGTTGTGACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229411 13 -  99763055 AATAGTTGTGACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292059 13 +    378907 AATAGTTGTGACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102147609 13 + 121039945 AATAGTTGTGACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60358524 13 + 169600520 TATAGTTGTGACT
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1814237 13 -   1987038 TATAGTTGTGACT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065043 13 -  24206276 AATAGTTGTGACT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298434 13 -   1458659 AATAGTTGTGACT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474081 13 -   9444221 AATAGTTACGGCT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             510396 13 -   3282555 AATAGTTATGACT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       295933 13 -   1024465 AATAGTTATGACT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       741213 13 -   3745603 AATAGTTATGACT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 924805 13 - 119751181 CATAGCTATAACT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       648621 13 -   2566024 CATAGTTATAACT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6765503 12 -  36342412 -ATAGTTATAACT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55180246 13 + 124595110 AATAGTCACAACT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 51264 13 -  40214260 GGTAATTATAGCT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              42600 13 -   2180720 AATAATTATGACT
i dasNov3.JH569975          C 0 C 0
e macNem1.NW_012011056v1      5354374 306 -   6271500 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=721056.000000
s hg38.chr15_KI270850v1_alt    193467 58 +    430880 TTGTAAAGCTTTTAAATCTGCTTTCCCCAGAGTCTAGCTTTTAAATAAAATACAGGAT
s panTro5.chr15              18003123 58 -  83230942 TTGTAAAGCTTTTAAATCTGCTTTCCCCAGAGTCTAGCTTTTAAATAAAATACAGGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229424 58 -  99763055 CTGTAAAGCTTTTAAATCTGCTTTCCCCAGAGTCTAGCTTTTAAATAAAATACAGGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292072 58 +    378907 TTGTAAAGCTTTTAAATCTGCTTTCCCCAGAGTCTAGCTTTTAAATAAAATACAGGAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102147622 58 + 121039945 TTGTAAACCTTTTAAATCTGCTTTCCCCAGAGTCTAACTTTTAAATAAAATACAGGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60358537 58 + 169600520 TTGTAAAGCTTTTAAATCTGCTTTACCCAGAGTCTAACTTTTAAATAATATATAGGGT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5354680 58 -   6271500 TTGTAAAGCTTTTAAATCTGCTTTACCCAGAGTCTAGCTTTTAAAGAAAATACAGGAT
i macNem1.NW_012011056v1    I 306 C 0
s cerAty1.NW_012002657v1      1814250 58 -   1987038 TTGTAAAGCTTTTAAATCTGCTTTACCCAGAGTCTAACTTTTAAATAATATATAGGAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065056 58 -  24206276 TTGTAAAGCTTTTAAATCTGCTTTACCCAGGGTCTAACTTTTAAATAAAATACAGGAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298447 58 -   1458659 TTGTAAAGCTTTTAAATCTGCTTTACCCAGAGTCTAACTTTTAAATAAAATACAGGAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474094 58 -   9444221 TTGTAAAGCTTTTAAATCTGCTTTATCCAGAGTCTAGCTTTTAAATAAAATATGAGAT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             510409 58 -   3282555 TTGTAAAACTTTTAAACCTGCTTTACCCAGAGTCTAACTTTTAAATAAAATGGGGGAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       295946 57 -   1024465 TTGAAAAGCTTTTAAACCTGC-TTACCCAGAGTCTAGATTTTAAATAAAATAGAGGAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       741226 58 -   3745603 TTGTAAAGCTTTTAAACCTGCTTTACCCAGAGTCTAACTTTTAAATAAAATAGAGGAT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 924818 58 - 119751181 TTGTAAAGCTATTAAAACTGCTTTACCCAGAGTCTAGCTTTTAAGTAAAATATAGGAT
i micMur3.chr3              C 0 I 158
s proCoq1.NW_012149419v1       648634 58 -   2566024 TTGTAAAGCTATAAAAACTGCTTTACCCTGAGTCTAGCTTTTAAGTAAAATATAGGAT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6765515 57 -  36342412 TTGTAAAGCTATTATATCTGCTTTACTCAGAATCTAG-GTTTAAGTAAAATACAGGAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55180259 40 + 124595110 TAATGAGGCTGTGGGATCTGCTTTCCACAGA------------------ACATAAGGT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 51277 58 -  40214260 TAACAAATCTATTAAATATGCTTTACTCAGATTCTAGCTCTTAAACAAAATGTGAGGT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              42613 58 -   2180720 TTGTAAGTCTATTAAATATGTTTTACTTAGATTCTAGCTTTTAAACAAAATATAAGAA
i dasNov3.JH569975          C 0 C 0
e macFas5.chr7              107345402 100 - 171882078 I

a score=108720.000000
s hg38.chr15_KI270850v1_alt    193525 8 +    430880 ATAAAAGG
s panTro5.chr15              18003181 8 -  83230942 ATAAAAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229482 8 -  99763055 ATAAAAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292130 8 +    378907 ATAAAAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102147680 8 + 121039945 ATAAAAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60358595 8 + 169600520 ATAAAAGG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5354738 8 -   6271500 ATAAAATG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1814308 8 -   1987038 ATAAAAGG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065114 8 -  24206276 GTAAAAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298505 8 -   1458659 ATAAAAGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474152 8 -   9444221 ATAAAAGG
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             510467 8 -   3282555 ATAAAAGG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       296003 8 -   1024465 ATAAAAGG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       741284 8 -   3745603 ATAAAAGG
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       648692 8 -   2566024 ATAAGAGG
i proCoq1.NW_012149419v1    C 0 I 147
s otoGar3.GL873530            6765572 8 -  36342412 ATAAAAGA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55180299 8 + 124595110 ATTAAAGG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 51335 8 -  40214260 ACAGAAGG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              42671 8 -   2180720 ATAAAAGG
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 924876 158 - 119751181 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=408055.000000
s hg38.chr15_KI270850v1_alt    193533 51 +    430880 --TGGGAGCC-TCTTGAATGGAATGT-GGG--------GGCTTTTTCTTTC-------TCCCCATAGGAT--
s panTro5.chr15              18003189 51 -  83230942 --TGGGAGCC-TCTTGAATGCAATGT-GGG--------GGCTTTTTCTCTC-------TCCCCATAGGAT--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229490 51 -  99763055 --TGGGAGCC-TCTTGAATGCAATGT-GGG--------GGCTTTTTCTCTC-------TCCCCATAGGAT--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292138 51 +    378907 --TAGGAGCC-TCTTGAATGGAATGT-GGG--------GGCTTTTTCTCTC-------TCCCCATAGGAT--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102147688 52 + 121039945 --TGGGAGCC-TCTTGAATGGAATGTGGGG--------GGCTTTTTCTCTC-------TCCCCATAGGAT--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60358603 50 + 169600520 --TGAGAGCC-TCTTGAATGGAATGT--GG--------GGCTTTTTCTCTC-------TCCCCATAGGAT--
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5354746 49 -   6271500 --TGGGA-CC-CCTTGAATGGAATGT--GG--------GGCTTTTTCTCTC-------TCCCCATAAGAT--
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1814316 50 -   1987038 --TGAGAGCC-TCTTGAATGGAATGT--GG--------GGCTTTTTCTCTC-------TCCCCATAGGAT--
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065122 51 -  24206276 --TGGGAGCC-TCTTGAATGGAATGT-AAG--------GGCTTTATCTCTC-------TCCCCATAGGAT--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298513 51 -   1458659 --TGGGAGCC-TCTTGAATGGAATGT-AAG--------GGCTTTATCTCTC-------TCCCCATAAGAT--
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474160 51 -   9444221 --TGGGAGCC-TCTTGAATGGAATGT-GGG--------GGCTTTTTCTCTT-------TCCCCATAGAAT--
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             510475 51 -   3282555 --AGGGAACC-TCTTGAATTGAATGT-GGG--------GGCTTTTTCTTTC-------TCCCTATAGGAT--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       296011 51 -   1024465 --AGGGAACC-TCTTGAATTGAATGT-GGG--------GGCTTTTTCTCTC-------TCCCTATAGGAT--
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       741292 59 -   3745603 --AGGGAACC-TCTTGAATTGAATGT-GGATAGGATTCAATTTTTTCTCTC-------TCCCTATAGGAT--
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6765580 51 -  36342412 --AGGGAGCCTTTTTGAGTCGAATGT-AAG--------GGTTTTTTCCCT--------TCCGCATGGAAC--
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55180307 57 + 124595110 --AGAAAACC-TTGTGAGTGGAGTCT--GG--------GGCTTTCCTCCTCCTCCTCTTCCTCCTAGAAT--
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 51343 43 -  40214260 --AGGGAAGC----TGAACTGAATGT-GAA--------TGCTTTTTTCTCT-------TCCCCAT-------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              42679 55 -   2180720 AAAGAACTCT-TTTTGAACTGGATAT-GGA--------AGCTTTTTACCCT-------TCTCTGTTAAACAT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 924876 158 - 119751181 I
e proCoq1.NW_012149419v1       648700 147 -   2566024 I
e macFas5.chr7              107345402 100 - 171882078 I

a score=512610.000000
s hg38.chr15_KI270850v1_alt    193584 55 +    430880 AGATATAT--TCTGTTT--CCTGTCCCCCACCAAGTCAAGAATAATTTAAGTTTT-GGC----A
s panTro5.chr15              18003240 55 -  83230942 AGATATAT--TCTGTTT--CCTGTCCCCCACCGAGTCAAGAATAATTTAAGTTTT-GGC----A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229541 55 -  99763055 AGATATAT--TCTGTTT--CCTGTCCCCCACCGAGTCAAGAATAATTTAAGTTTT-GGC----A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292189 55 +    378907 AGATATAT--TCTGTTT--CCTGTCCCCCACCGAGTCAAGAATAATTTAAGTTTT-GGC----A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102147740 55 + 121039945 AGATATAT--TCTGTTT--CCTGTCCCCCACTGAGTCAAGAATAATTTAAGTTTT-GGC----A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60358653 55 + 169600520 AGATATAT--TCTGTTT--ATTGTCCCCCATTGAGTCAAGAATAATTTAACTTTT-GGC----A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107345502 55 - 171882078 AGATATAT--TCTGTTT--CTTGTTCCCCATTGAGTCAAGAATAATTGAACGTTT-GGC----A
i macFas5.chr7              I 100 C 0
s macNem1.NW_012011056v1      5354795 55 -   6271500 AGATATAT--TCTGTTT--CTTGTTCCCCATTGAGTCAAGAATAATTGAACTTTC-AGC----A
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1814366 55 -   1987038 AGATATAT--TCTGTTT--ATTGTCCCCCATTGAGTCAAGAATAATTTAACTTTT-GGC----A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065173 46 -  24206276 AGATATAC--TCTGTTT--CTTGTCCCCCATTGAGTCAATAAT---------TTT-GGC----A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298564 46 -   1458659 AGATATAT--TCTGTTT--CTTGTCCCCTATTGAGTCAAGAAT---------TTT-GGC----A
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474211 55 -   9444221 AGATATAT--TCTGTTT--CTTGTCCCCCATTGAGTCAAGAATAATTTAACTTTT-GGC----A
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             510526 55 -   3282555 AGGTATAT--TCTGTTT--CTTGTCCCCCAGTGAGTCAAGAATAATTTAGCTTTT-GGC----A
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       296062 55 -   1024465 AGATGTAT--TCTGTTT--CTTGTCCCCCAGTGAGTCAAGAATAATTTAGCTTTT-GGC----A
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       741351 53 -   3745603 AGATATAT----TGTTT--GTTTTCTCCCAGTGAGTCAAGAATAATTTAGCTTTT-GGC----G
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6765631 56 -  36342412 AGATATATTCTCTCTTT--ACTGTTTCTTGTTGAATCAAGAATAATTTAACTTTT--GC----A
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55180364 55 + 124595110 GGATGCAT--CCTTTCTTGCTTGTGCTTT------TAAAATTTTATTCAATTTTT-TTTTCTGA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 51386 47 -  40214260 ----------TCTCTTT--TCTGTTTCCTATTAAATCAAGAATAATTGAACTTTT-GGC----A
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              42734 55 -   2180720 ATATGTTT--TCTCTTT--CCTGTTTCCTGTTGAATCAA-AATAATTTAAATTCTaagc----a
i dasNov3.JH569975          C 0 I 1514
e micMur3.chr3                 924876 158 - 119751181 I
e proCoq1.NW_012149419v1       648700 147 -   2566024 I

a score=429168.000000
s hg38.chr15_KI270850v1_alt    193639 46 +    430880 TAAGAAACTGCTGAAGGAAAATGGGTTGAATCGGCTAATATTTTTC
s panTro5.chr15              18003295 46 -  83230942 TAAGAAACTGCTGAAGGAAAGTGGGTTGAATCGGCTAATATTTTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229596 46 -  99763055 TAAGAAACTGCTGAAGGAAAGTGGGTTGAATCGGCTAATATTTTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292244 46 +    378907 TAAGAAACTGCTGAAGGAAAGTGGGTTGAATCAGCTAATATTTTTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102147795 46 + 121039945 TAAGAAACCGCTGAAGGAAAGTGGGTTGAATCAGCTAATATTGTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60358708 46 + 169600520 TGAGAAACTGCTGAAGAAAAATAGGTTCAATAAGCTAACATTTTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107345557 46 - 171882078 TAAGAAACTGCTGAAGAACTATCGGTTGAATAACCTAATATTTCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5354850 46 -   6271500 TAAGAAACTGTTGAAGAAAAGTCGGTTGAATAACCTAACATTTCTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1814421 46 -   1987038 TGAGAAACTGCTGAAGAAAAATAGGTTCAATAAGCTAACATTTTTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065219 45 -  24206276 TAAGAAACTGCTGAAGATA-ATAGGTTGAATAAGCTAATATTTTTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298610 45 -   1458659 TAAGAAACTGTTGAAGAAA-ATAGGTTGAATAAGCTAACATTTTTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474266 46 -   9444221 TAAGAAACTGCGGAAGAAAAATAGGTTGAATAAGCTAACATTTTTC
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             510581 46 -   3282555 TAAGAAACTACTGAAGAAAAATAGGTTGAATAAGCTAACATTTTTC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       296117 46 -   1024465 TAAGAAACTACTGAAGAAAAATAGGTTGAATAAGCTAACATTTTTC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       741404 46 -   3745603 TAAGAAACTACTGAAGAAAAATAGGTTGAATAAGCTAACATTTTTC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6765687 43 -  36342412 TAAGAAACTACTGAAGAAAAATAATTTGAATAAGGTAATATTT---
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55180419 41 + 124595110 CTAGAAACCAGTGAAGAAGAGAAGCATTAATAAGCC----TTTTA-
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 51433 26 -  40214260 TAAG--------------------CTTCAACAAACTAATAGCTTTC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              44303 46 -   2180720 taagacaCTACTAAAGAAAAAGAACTTAAATAAGGTAGTATTTTTC
i dasNov3.JH569975          I 1514 C 0
e micMur3.chr3                 924876 158 - 119751181 I
e proCoq1.NW_012149419v1       648700 147 -   2566024 I

a score=3575722.000000
s hg38.chr15_KI270850v1_alt    193685 240 +    430880 TTC---------TTTTTGCAGGATATAGAAG-ACTTAGATCACTATGAGATGA---AAGAAGAGCCTATTAGTGAGAAGAAGTTGGAGGATGAAGGAACTGAAAAAGAAAATTGGGCAATATTAGAGAAAATTAGGAAGACTGAAAGGCAAGGCCATTTAAATGTGTAAGTGTGTATAAA-----TATC-------TGGACTTTT-TGGTT------AAGTAATTATAGTTAAT------------ACCA---------GGCAATTCATGAACATGCCGATGTCAGCTGCTCT
s panTro5.chr15              18003341 240 -  83230942 TTC---------TTTTTGCAGGATATAGAAG-ACTTAGGTCACTATGAGATGA---AAGAAGAGCCTACTAGTGAGAAGAAGTTGGAGGATGAAGGAACTGAAAAAGAAAATTGGGCAATATTAGAGAAAATTAGGAAGACTGAAAGGCAAGGCCATTTAAATGTGTAAGTGTGTATAAA-----TATC-------TGTACTTTT-TGGTG------AAGTAATTGTAGTTAAT------------ACCA---------GGCAATTCATGAACATGCTGATCTCAGCTGCTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229642 240 -  99763055 TTC---------TTTTTGCAGGATATAGAAG-ACTTAGGTCACTATGAGATGA---AAGAAGAGCCTACTAGTGAGAAGAAGTTGGAGGATGAAGGAACTGAAAAAGAAAATTGGGCAATATTAGAGAAAATTAGGAAGACTGAAAGGCAAGGCCATTTAAATGTGTAAGTGTGTATAAA-----TATC-------TGTACTTTT-TGGTG------AAGTAATTGTAGTTAAT------------ACCA---------GGCAATTCATGAACATGCTGATCTCAGCTGCTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292290 239 +    378907 TTC---------TTTTTGCAGGATATAGAAG-ACTTAGATCACTATGAGATGA---AAGAAGAGCCTACTAGTGAGAAGAAGTTGGAGGATGAAGGAACTGAAAAAGAAAATTGGGCAATATTAGAGAAAATTAGGAAGACTGAAAGGCAAGGCCA-TTAAATGTGTAAGTGTGTATAAA-----TATC-------TGGACGTTT-TGGTG------AAGTAATTATAGTTAAT------------ACCA---------GGCAATTCATGAACATGCCGATGTCAGCTGCTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102147841 240 + 121039945 TTC---------TTTTTGCAGGATATAGAAG-ACTTAGATCACTACGAGATGA---AAGAAGAGCCTATTAGTGAGAAGAAGTTGGAGGGTGAAGAAACTGAAAAAGAAAATCGGGCAATATTAGAGAAAATCAGGAAGACTGAAAGGCAAGGCCATTTAAATATGTAAGTGTGTATAAA-----TATC-------TGGACTTTT-TGGTT------AAGTAATTATAGTTAAT------------ACCA---------GGCAATTCATGAACATGCTGATCTCAGCTGCTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60358754 247 + 169600520 TTC---------TTTTTGCAGGATATAGAAG-ACTTAGATCATTATGAGATGA---AAGAAGAGCCTATTAATGGGAAAAAGTTGAAGGATGAAGGAATTGAAAAAGAAAATTGGGCAATATTGGAGAAAATTAGGAAGACTGAAAGGCAAGACCGTTTAAATGTGTAATTGTGTATCAA-----TATCTGGAGCCTGGACTTTT-TGGTC------AAGTAATTATAGTTAAC------------ACAA---------GGCAATTCATGAACATGCTGATCTCAGCTGCTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107345603 247 - 171882078 TTC---------TTTTTGCAGGATATAGAAG-ACTTAGATCACTATGAGATGA---AAGAAGAGCCTATGAGTGGGAAACAGTTGGAGGATGAAGGAACTGAAAAAGAAAATTGGGCAATATTAGAGAAAATTAGGAAGACTGAAAGGTATCACAATTTAAACGTGGAAGTGTGTATAAA-----TATCTAGAGCCTGGACTTTT-TGGTT------AAGTAATTATAGTTAAT------------ACCA---------GGCAATTCATGAACATGCCAATCTCAGCTGCTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5354896 247 -   6271500 TTC---------TTTTTGCAGGATATAGAAG-ACTTAGATCACTATGAGATGA---AAGAAGAGCCTATGAGTGGGAAACAGTTGGAGGATGAAGGAACTGAAAAAGAAAATTGGGCAATATTAGAGAAAATTAAGAAGACTGAAAGGTAAGACCATTTAAATGTGGAAGCGTGTATAAA-----TATCTGGAGCCTGGACTTTT-TGGTT------AAGTAATTATAGTTAAT------------ACCA---------GGCAATTCATGAACATGACAATCTCAACTGCTCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1814467 247 -   1987038 TTC---------TTTTTGCAGGATATAGAAG-ACTTAGATCATTATGAGATGA---AAGAAGAGCCTATTAATGGGAAAAAGTTGAAGGATGAAGGAATTGAAAAAGAAAATTGGGCAATATTAGAGAAAATTAGGAAGACTGAAAGGCAAGACCATTTAAATGTGTAATTGTGTATCAA-----TATCTGGAGCCTGGACTTTT-TGGTC------AAGTAATTATAGTTAAC------------ACAA---------GGCAATTCATGAACATGCTGATCTCAGCTGCTGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065264 247 -  24206276 TTC---------TTTTTGCAGGATATAGAAG-ACTTAGATCATTATGAGATGA---AAGAAGAGCCTATTAGTGGGAAAATGTTGGAGGATGAAGGAACTGAAAACAAAAATTGGGCAATATTAGAGAAAATTAGGAAGACTGAAAAGTAAGACCATTTAAATGTGTAAGTGTGTATAAA-----TATCTGAAGCTTGGACTTTT-TGGTC------AAGTAATTATAGTTAAC------------ACCA---------GGCAATTCATGAACATGCTGATCTCAGCTGCTCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298655 248 -   1458659 TTC---------TTTTTGCAGGATATAGAAGAACTTAGATCACTATGAGATGA---AAGAAGAGCCTATTAGTGGGAAAATGTTGGAGGATGAAGGAACTGAAAACAAAAATTGGGCAATATTAGAGAAAATTAGGAAGACTGAAAGGTAAGACCATTTAAATGTGTAATTGTGTATAAA-----TCTCTGGAGCCTGGACTTTT-TGGTC------AAGTAATTATAGTTAAC------------ACCA---------GGCAATTCATGAACATGCCGATCTCAGCTGCTCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474312 235 -   9444221 TTC---------TTTTTGCAGGATATAGAAG-ACTTAGATCACTATGAGATGA---AAGAAGAGCCTATTAGTGGGAAAAAGTTGGAGGATGAAGGAATTGAAAAAGAAAATTTGGCAATATTAGAGAAAATT------------AGGCAAGACCATTTAAATGTGTAAGTGTGTGTAAA-----TAGCTAGAGCCTGGACTTTT-TGGTT------AAGTAATTACAGTTAAT------------ACCA---------GGCAATTCATGAACATGCCGATCTCAGCTGCTCT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             510627 256 -   3282555 TTCTTTTTTTTTTTTTTGCAGGATATAGAAG-ACTTAGATCACTATGAGATGAAGGAAGAAGAGCCTATTAGTGGGAAAAAGTCAGAGGATGAAGGAATTGAAAAAGAAAATTTGGCAATATTAGAGAAAATTAGAAAGACTCAAAGACAAGACCATTTAAATGT--AAGTGTGTA--AA-----TATCTAGAACCTGGACTTTTGTGGTT------AAGTAATTACAGTTAAT------------ACCA---------GGCAGTTCATTAACATGTCTATCTCAGCTGCCCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       296163 249 -   1024465 TTC-------TTTTTTTGCAGGATATAGAAG-ACTTAGATCACTATGAGATGAAGGAAGAAGAACCTATTAGTGGGAAGAAGTCAGAGGATGAAGGAATTGAAAAAGAAAATTTGGCAATATTAGAGAAAATTAGGAAGACTCAAAGGCAAGACCATTTAAATGT--AAGTGTGTA--AA-----TATCTAGAACCTAGACTTTTGTGGTT------AAGTAATTACAGTTAAT------------AACA---------GGCAATTCATTAACATGCCTATCTCAGCTGCCCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       741450 248 -   3745603 TTC--------TTTTTTGCAGGATATAGAAG-ACTTAGATCACTATGAGATGAAGGAAGAAGAGCCTATTAGTGGGAAAAAGTCAGAGGATGAAGGAATTGAAAAAGAAAATTTGGCAATATTAGAGAAAATTAGGAAGACTCAAAGGCAAGACCATTTAAATGT--AAGTGTGTA--AA-----TATCTAGAACCTGGACTTTTGTGGTT------AAGTAATTACAGTTAAT------------ACCA---------GGCAATTCATTAACATGCCTATCTCAGCTGCCCT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 925034 250 - 119751181 TTC---------TTTTTGTAGGATATAGAAG-ACTTAGATCACTATGAGATGAAGGAAGAAGAGCCTATTAGTGGGAGAAAGTTGGAGGATGAAGGAATTGAAAAAGAAAATTTGGCAATATTAGAGAAAATTAGGAAGACTCAGAGGCAAGACCATTTAAATGT--AAGTGTGTATAAA-----TATTTAGAGCCTGGACTTTTGTGGTT------AAATAATTATAATTAAC------------ACTA--------GGGTAGTTCATTAAGATACCAATCTCAGCTGCTCT
i micMur3.chr3              I 158 C 0
s proCoq1.NW_012149419v1       648847 249 -   2566024 TTC---------TTTTTGTAGGATATAGAAG-ACTTAGATCACTATGAGATGAAGGAAGAAGAGCCTATTAGTGGGAAAAAGTCGGAGGATGAAGGAATTGAAAAAGAAAATTTGGCAATATTAGAGAAAATTAGGAAGACTCAGAGGCAAGACCATTTAAACGT--AAGTGTGTGTAAA-----TATTTAGAACCTGGACTTTTGTGGTT------AAGTGATTATAATTAAC------------ACTA---------GGCAGGTCATTAAGATGCCAATCTCAGCTGCCCT
i proCoq1.NW_012149419v1    I 147 C 0
s otoGar3.GL873530            6765730 254 -  36342412 TTC---------TTTTTGTAGGATATAGAAG-ACTTAGATCACTATGAGATGAAGGAAGAAGAACCTATTAGTGGGAAAAAGTCAGAGGATGAAGGTATTGAAAAAGAAAATTTGGCAATATTAGAGAAAATTAGGAAGACTCAACGGCAAGACCATTTAAATGT--AAGTGTGGATAAATACTGTATCTAGAAACTAGACTTTCCTGGTT------AAGTAATCATCATTAAC------------ACTG---------GGCAGTTCGTTAAGATACCAATCTCAGAGGCCTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55180460 226 + 124595110 TTC---------TCTTTGTAGGATATAGAAG-ACTTGGATCACTATGAGATGAAGGAAGAAGAACCTATTAATGGGAAAAAGTCAGAGGATGAAGGGATTGAAAAAGAAAATTTGGCAATATTAGAGAAAATCAGGAAGACTCAAAGGCAAGACCATTTAAATGT--AAGTGTGAGTAAG-----TATCTAGAACCTGAATTTCG-TGATT------ACATAATTACAG-----------------ATCG---------AG------------ATACCAATCTCAGC-----T
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 51459 255 -  40214260 ---------------TTGTAGGACATAGAAG-ACTTGGATCACTATGAGATGAAGGAAGAAGAGCCTATTAGTGGAAAAAAGTCAGAGGATGAAGGAATTGAAAAGGAAAACTTGGCAATACTAGAGAAAATTAGGAAGACTCAAAGGCAAGACCATCTCAATGT--AAGTATGTGCAAA-----TATCTAGAACCTGGACTTTGGGGATT------GAGTAATTATAGGTAATAATTAATATAAAACTG---------GGCAGTTCATTAGGATAGCAGTCTAAGCTGCCCT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              44349 263 -   2180720 ATC---------GTTTTGTAGGATATAGAAG-ACTTGGATCACTATGAAATGAAGGAAGAAGAGCCTATTAGTGGAAAAAAGTCAGAGGATGAAGGAATTGAGAAAGAAAATTTGGCAATATTAGAGAAAATTAGGAAGACTCAAAGGCAAGACCATCTAAATGT--AAGTATATTTAAA-----TATCTAGAAC-TGGACTTACATGGTTAAGATAAAGTAATTATAGGAAAT------------AATATAAAAATGGGGCAATTCATTAAAATACCAATCTCAGCTGCCCT
i dasNov3.JH569975          C 0 I 191

a score=425730.000000
s hg38.chr15_KI270850v1_alt    193925 36 +    430880 CCTCCTCCATTCCTGCCTTAGTGGC--GGATTCAGTCA
s panTro5.chr15              18003581 36 -  83230942 CCTCCTCCATTCCTGCCTTAGTGGT--GGATTCGGTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229882 36 -  99763055 CCTCCTCCATTCCTGCCTTAGTGGT--GGATTCGGTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292529 36 +    378907 CCTCCTCCATTCGTGCCTTAGTGGT--GGATTCAGTCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148081 36 + 121039945 CCTCCTCCATTCCTGCCTTAGAGGT--GGATTCAGTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359001 36 + 169600520 CCTCCTCCATTCCTGCTTTAGTGGT--GGATTCAGTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107345850 36 - 171882078 CCTCCTCCATTCCTGCTTTAGTGGT--GGATTCAGTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355143 36 -   6271500 CCCCTTCCATTCCTGCCTTAGTGGT--GGATTCAGTTA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1814714 36 -   1987038 CCTCCTCCATTCCTGCTTTAGTGGT--GGATTCAGTCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065511 36 -  24206276 CCTCCTCCATTCCTGCTTTAGTGGT--AGATTCAGTCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298903 36 -   1458659 CCTCCTCCATTCCTGCTTTAGTGGT--GGATTCAGTCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474547 24 -   9444221 CCTCCTCCATTCCTACCTT--------------AGTCA
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             510883 36 -   3282555 CCTGCTCCATTCCCGCCTTAGTGGT--GGATTCAATCA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       296412 36 -   1024465 CCTCCTCCATTCCTGCCTTAGTGGT--GGATTCAGCCA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       741698 36 -   3745603 CCTCCTCCATTCCTGCCTTAGTGGT--GGATTCAGTCA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 925284 36 - 119751181 CTTCCTTTGTCCCTGCCTTAATGGT--AGATTCAGTCA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       649096 36 -   2566024 CTTCCTTTGTCCCTGCCTTAATGGT--AGATCCAGTCA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6765984 37 -  36342412 CTTCCTCT-TCCTTGCCTTAGTGATGGGGATTCAGTCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55180686 36 + 124595110 CCCTTTCCATCCTTGACTTAGTAAT--GGATTTGGTCA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 51714 32 -  40214260 C----TCCACTTTCTCCTCTGTTGT--ACACTCAGCCA
i canFam3.chr30             C 0 C 0
e dasNov3.JH569975              44612 191 -   2180720 I

a score=20214.000000
s hg38.chr15_KI270850v1_alt    193961 3 +    430880 TGT
s panTro5.chr15              18003617 3 -  83230942 TAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229918 3 -  99763055 TAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292565 3 +    378907 TGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148117 3 + 121039945 TAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359037 3 + 169600520 TTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107345886 3 - 171882078 TTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355179 3 -   6271500 TAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1814750 3 -   1987038 ttt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065547 3 -  24206276 TTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298939 3 -   1458659 TTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474571 3 -   9444221 TAT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             510919 3 -   3282555 TAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       296448 3 -   1024465 TAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       741734 3 -   3745603 TAT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 925320 3 - 119751181 TGT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       649132 3 -   2566024 TGT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6766021 3 -  36342412 AGT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 51746 1 -  40214260 --T
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55180722 0 + 124595110 C
e dasNov3.JH569975              44612 191 -   2180720 I

a score=48776.000000
s hg38.chr15_KI270850v1_alt    193964 4 +    430880 GTTT
s panTro5.chr15              18003620 4 -  83230942 GTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229921 4 -  99763055 GTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292568 4 +    378907 GTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148120 4 + 121039945 GTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359040 4 + 169600520 GTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107345889 4 - 171882078 GTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355182 4 -   6271500 GCTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1814753 4 -   1987038 gttt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065550 4 -  24206276 GTTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298942 4 -   1458659 GTTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474574 4 -   9444221 GTTT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             510922 4 -   3282555 Gttt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       296451 4 -   1024465 Gttt
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       741737 4 -   3745603 Gttt
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 925323 4 - 119751181 GTTT
i micMur3.chr3              C 0 I 29
s proCoq1.NW_012149419v1       649135 4 -   2566024 GTTT
i proCoq1.NW_012149419v1    C 0 I 51
e mm10.chr9                  55180722 0 + 124595110 C
e dasNov3.JH569975              44612 191 -   2180720 I
e canFam3.chr30                 51747 0 -  40214260 C
e otoGar3.GL873530            6766024 0 -  36342412 C

a score=1074199.000000
s hg38.chr15_KI270850v1_alt    193968 166 +    430880 ATTGGttttgagacagggtcttgctctgtcgcctgggctagagagcagtagcacaatcatagttcactgtagcctttatctcccaggc------------------------------------tgcagtggtcctcctacctcagcctcccaagtgtctcagattatagtcatgtgccaccacaccaggctaatt-------------------tttttg
s panTro5.chr15              18003624 166 -  83230942 ATTGGttttgatatagggtcttgctctgtcacctgggctagtgtgcagtggcacaatcatagttcactgtagcctttatctctcaggc------------------------------------tccagtggtcctcctacctcagcctcccaagtgtctcagactatcgtcatgtcccaccacaccaggctaatt-------------------tttttg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17229925 166 -  99763055 ATTGGttttgatatagggtcttgctctgtcacctgggctagtgtgcagtggcacaatcatagttcactgtagcctttatctctcaggc------------------------------------tccagtggtcctcctacctcagcctcccaagtgtctcagactatcgtcatgtcccaccacaccaggctaatt-------------------tttttg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292572 166 +    378907 ATTGGttttgagacagggtcttgctctgtcgcctgggctagagtgcagtggcacaatcatagtgcactgtagcctttatctcccaggc------------------------------------tccagcagtcctcctggctcagcctcccaagtgtctcagattataggcatgtgccaccacaccaggctaatt-------------------tttttg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148124 166 + 121039945 ATTGGttttgagacagggtcttgctctgtcgcctgggctagagtgtggtagcacaatcatagttcactgtagcctttatctctcaggc------------------------------------tccggtggtcctcctacctcagcctcccaagtgtctcagactatagtcatgtgccaccacaccaggctaatt-------------------tttttg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359044 202 + 169600520 ATTGAttttgagacagggtcttgctctgtcgcctgggctagagtgcggtggcacaatcatagttcactgtagcctttatctcccaggctccagtggtcctcctgcttccagtggtcctcctgcctccagtggtcctcctgcctcagcctcccaagtgtctcagactataggcttgtggcaccgcaccaggctaatt-------------------tttttg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107345893 177 - 171882078 ATTGGttttgagacagggtcttgctctgtcacctgggctagggtgcggtggcacaatcatagttcactgtagcctttatctcccaggc------------------tccagtggtcctcctgcctccagtggtcctcctgcctcagcctcccaagtgtctcagactataggcatgtgccaccacacc-------ac-------------------tttttg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355186 166 -   6271500 ATTGtttttgagacagggtcttgctctatcacctgggctagagtgcagtggcacaatcatagttcactttagcctttatctccaagg------------------------------------ctccagtggtcctcctgcctcagcttcccaagtgtctcagactacaggtatgtgccactacaccaagctaaat-------------------tttttt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1814757 202 -   1987038 attgattttgagatagggtcttgctctgtcgcctgggctagagtgcggtggcacaatcatagttcactgtagcctttatttcccaggctccagtggtcctcctgcctccagtggtcctcctgcctccagtggtcctcctgcctcagcctcccaagtgtctcagactataggcatgtggcactgcaccaggctaatt-------------------tttttg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065554 177 -  24206276 ATTGGttttgagacagggtcttgctctgtcacctgggctagggtgcggtggcacaatcatagttcactgtagtctttatctcccaggc------------------tccagtggtcctcctgcctccagtggtcctcctgcctcagcctcccaagtgcctcagactataggcatgtggcaccgcacc-------ac-------------------tttttg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       298946 177 -   1458659 ATTGGttttgagacagggtcttactctgtcacctgggctagggtgcggtggcacaatcatagttcactgtagcctttatctcccaggc------------------tccagtggtcctcctgcctccagtggtcctcctgcctcagcctcccaagtgtctcagactataggcatgtgccaccacatc-------ac-------------------tttttg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474578 166 -   9444221 GTTGGttttgagacaggggcttgctctgtcacctgggctagagtgtggtggcacaatcatagttcactgtagtcttaattccccaggc------------------------------------tccagtgatcctcctgcctcagcctcccaagtgtctcggactataggcatgtgccaccacaccaggctaatt-------------------tttttt
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             510926 168 -   3282555 a----ttttaaaacagggtctttcgctgtcattcaggctagagtgcagtggcacagtcatagttcagtgtagccttgatttctcaggc------------------------------------tccggtaatc------ctcctgcctcccaagtagcttggactataggcatgtgctaccataccaggcttttttttttttttttt-------ttttta
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       296455 174 -   1024465 a----ttttaaaacagggtctttctctgtcattcaagctagagtgcagtggcac---tctaggtcagtgtagccttgatctctcaggc------------------------------------tctagtaatc-tcctgcctcagcctcccaagtagcttggactataggcatgtgctaccataccaggctagttttttttttttttt---aaattttta
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       741741 181 -   3745603 a----ttttaaaacagggtctttccctgtcatccaggctagagtgccgtggcacaatcatagttcagtgtagccttgacctctcaggc------------------------------------tccagtaatcctcctgcctcagcctcccaagtagcttggactataggcatgtgctacgataccaggctagtttttttttttttttttaattttttaa
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr30                 51747  25 -  40214260 ----GTTTTG----------------------------------------------------------------TTTACCTGATGGGT------------------------------------TTTTG--------------------------------------------------------------------------------------------
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 925327  29 - 119751181 I
e proCoq1.NW_012149419v1       649139  51 -   2566024 I
e mm10.chr9                  55180722   0 + 124595110 C
e dasNov3.JH569975              44612 191 -   2180720 I
e otoGar3.GL873530            6766024   0 -  36342412 C

a score=1134332.000000
s hg38.chr15_KI270850v1_alt    194134 138 +    430880 atttttagtaaagatgaggtctcactgtgttgaccatgctggtcttgaacacctgagttcaagcagtcctgctaccttggcctgcccaagtgctgggattacagacatgagccaccatgcctagccACGCTCATATGC
s panTro5.chr15              18003790 138 -  83230942 atttttagtagagatgaggcctcactatgttgaccatgctggtcttgaacacctgagttcaagcagtcctactaccttggcctgcccaagtgctgggattacagacatgagccaccatgcctagccACACTCATATGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230091 138 -  99763055 atttttagtagagatgaggcctcactatgttgaccatgctggtcttgaacacctgagttcaagcagtcctactaccttggcctgcccaagtgctgggattacagacatgagccaccatgcctagccACACTCATACGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292738 138 +    378907 atttttagtagagatgaggtctcactatgttgaccatgctggtcttgaacacctgagttcaagcagtcctgctaccttggcctgcccaagtgctgggattacagacatgagccaccatgactagccACACTCATATGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148290 138 + 121039945 atttttagtagagatgaggtctcactatgttgaccatgctggtcttgaacacctgagttcaagcagtcctgctaccttggcctgcccaagtgctgggattacagacatgaaccgccatgcctagccATACTCATACGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359246 134 + 169600520 atttttagtagaaatgaggtctcactttgttgaccatgctggtcttaaacacctgagtt----cagtcctcttacctcggcctgcccaagtgctgggattacagacatgagccaccatgcccagccACAGTCATATGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107346070 138 - 171882078 atttttagtagagatgaggtctcactatgttgaccatgctggtcttgaacacctgaattcaagcagtcctcttaccttggcctgcccaagtgctgggattacagacatgagccaccatgcccagccACGCTCATATGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355352 138 -   6271500 atttttagttgagatgaggtctcactgtgttgaccatgctggtcttgaacacctgagttcaagcactcctgctaccttaccctgcccaagtgctgggattacagacatgagccaccatgcccagccACACTCATATGC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1814959 138 -   1987038 atttttagtagaaatgaggtctcactctgttgaccatgctggtcttaaacacctgagttcaaacagtcctcttacctcggcctgcccaagtgctgggattacagacatgagccaccatgcccagccACAGTCATATGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065731 138 -  24206276 atttttagtagaaatgaggtctcactgtgttgaccatgctggtcttgaacacctgaattcaagcagtcctcttaccttggcctgcccaagtgctgggattacagacatgagccaccatgcccagccACACTCATATGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       299123 138 -   1458659 atttttagtagagatgaggtctcactatgttgaccatgctggtcctgaacacctgaattcaagcagtcctcttaccttggcctgcccaagtgctgggattacagacatgagccaccatgcccagccACACTCATATGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474744 138 -   9444221 atttttagtagagatgaggcctcactatgttaatcatgctggtcttaaacacttgagttccagtgatcctcctgccttggcctgccaaagtgctgggattacaggcatgagccaccatgcctagccATGGTCATATGT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             511094 138 -   3282555 atttttagtagagatgaggtctctctgtgttgcccaggctggtcttgaacacctgagttcaaatgatcctcccatctcgacctcccaaagtactgggattacagacataagccaccatgcctagccTTAGTCATATGT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       296629 138 -   1024465 atttttagtagagatgaggtctctctgtgttgcccaggctggtctttaacacttgagttcaaatgatcctcccatctcgacctcccaaagtactgggattacaggcataagccgccatgcctagccTTAGTCGTATGT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       741922 138 -   3745603 aattttagtagagatgaggtctctctgtgttgcccaggctggtcttgaacacctgagttcaaatgatcctcccatctcgacctcccaaagtactgggattacatgcataagccaccatgcctagccTTAGTCATATGT
i aotNan1.NW_018511953v1    C 0 C 0
e micMur3.chr3                 925327  29 - 119751181 I
e proCoq1.NW_012149419v1       649139  51 -   2566024 I
e mm10.chr9                  55180722   0 + 124595110 C
e dasNov3.JH569975              44612 191 -   2180720 I
e canFam3.chr30                 51772   0 -  40214260 C
e otoGar3.GL873530            6766024   0 -  36342412 C

a score=9090.000000
s hg38.chr15_KI270850v1_alt    194272 1 +    430880 T
s panTro5.chr15              18003928 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230229 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292876 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148428 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359380 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107346208 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355490 1 -   6271500 C
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1815097 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065869 1 -  24206276 T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       299261 1 -   1458659 T
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474882 1 -   9444221 T
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             511232 1 -   3282555 T
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       296767 1 -   1024465 T
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       742060 1 -   3745603 T
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  55180722 1 + 124595110 T
i mm10.chr9                 C 0 C 0
e micMur3.chr3                 925327 29 - 119751181 I
e proCoq1.NW_012149419v1       649139 51 -   2566024 I
e dasNov3.JH569975              44612 191 -   2180720 I
e canFam3.chr30                 51772 0 -  40214260 C
e otoGar3.GL873530            6766024 0 -  36342412 C

a score=278778.000000
s hg38.chr15_KI270850v1_alt    194273 32 +    430880 TTGTTGCCGAAGGTTATCTTTCTCATCTATGA
s panTro5.chr15              18003929 32 -  83230942 TTGTTGCCCAAGGTTATCTTTCTCATCCATGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230230 32 -  99763055 TTGTTGCCCAAGGTTATCTTTCTCATCCATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292877 32 +    378907 TTGTTGCCGAAGGTTATCTTTCTCATCTATGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148429 32 + 121039945 TTGTTGCCCAAGGTTATCTTTCTCATCTATTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359381 32 + 169600520 TTGCTGCCCAAGGTTATCTTTCTCGTCTACGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107346209 32 - 171882078 TTGCTGCCCAGGGTTATCTTTCTCATCTATGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355491 32 -   6271500 TTGTTGCCCAAGGTTATCTTTCTCATCTATGA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1815098 32 -   1987038 TTGCTGCCCAAGGTTATCTTTCTCGTCTACGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065870 32 -  24206276 TTGCTGCCCAGGGTTATCTTTCCCATCTATGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       299262 32 -   1458659 TTGCTGCCCAGGGTTATCTTTCTCATCTATGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474883 32 -   9444221 TTGTTGCCCAAGGTTATCTTTCTCATCTATGA
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             511233 32 -   3282555 TTGTTGCACTAGATTACCTTTCTCGTCTATGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       296768 32 -   1024465 TTGTTGCCCTAGATTACCTTTCTTGTCTATGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       742061 32 -   3745603 TTGTTGCCCTAGATTACCTTTCTCGTCTACAA
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  55180723 32 + 124595110 TTGTTGACCTACGCTGCTTCTCCTGATTGTTG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 51772 26 -  40214260 TTGTTGTTGAAG------TTTCTCATCTGTTG
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 925327 29 - 119751181 I
e proCoq1.NW_012149419v1       649139 51 -   2566024 I
e dasNov3.JH569975              44612 191 -   2180720 I
e otoGar3.GL873530            6766024  0 -  36342412 C

a score=90194.000000
s hg38.chr15_KI270850v1_alt    194305 9 +    430880 ATAGCCACG
s panTro5.chr15              18003961 9 -  83230942 ATAGCCACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230262 9 -  99763055 ATAGCCACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292909 9 +    378907 ATAGCCACG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148461 9 + 121039945 ATAGCCACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359413 9 + 169600520 ATAGCCACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107346241 9 - 171882078 ATAGCTACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355523 9 -   6271500 ATAGccact
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1815130 9 -   1987038 ATAGCCACT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065902 9 -  24206276 ATAGCCACT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       299294 9 -   1458659 ATAGCTACT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474915 9 -   9444221 ATAGCCAGT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             511265 9 -   3282555 GTAGCCACT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       296800 9 -   1024465 ATAGCCACT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       742093 9 -   3745603 ATAGCCACT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 925356 9 - 119751181 ATAGTCACT
i micMur3.chr3              I 29 C 0
s mm10.chr9                  55180755 9 + 124595110 ACAGCCACT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 51798 6 -  40214260 GTATCT---
i canFam3.chr30             C 0 C 0
e proCoq1.NW_012149419v1       649139 51 -   2566024 I
e dasNov3.JH569975              44612 191 -   2180720 I
e otoGar3.GL873530            6766024 0 -  36342412 C

a score=150950.000000
s hg38.chr15_KI270850v1_alt    194314 14 +    430880 TTTTACCCTGTTCA
s panTro5.chr15              18003970 14 -  83230942 TTTTACCCTGTTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230271 14 -  99763055 TTTTACCCTGTTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292918 14 +    378907 TTTTACCCTGCTCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148470 14 + 121039945 TTTTACCCTGTTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359422 14 + 169600520 TTTTATCCTGTTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107346250 14 - 171882078 TTTTATCCTGTTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355532 14 -   6271500 ttttaccctgttca
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1815139 14 -   1987038 TTTTACCCTGTTCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065911 14 -  24206276 TTTTATCCTGTTCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       299303 14 -   1458659 TTTTATCCTGTTCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474924 14 -   9444221 TTTTACCCTGTTCA
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             511274 13 -   3282555 TTTTA-CCTGTTCA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       296809 13 -   1024465 TTTTA-CCTGTTCA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       742102 13 -   3745603 TTTTA-CCTGTTCA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 925365 14 - 119751181 TTCTACCCTGTTCT
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6766024 14 -  36342412 TTCTACCTTGTTGT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55180764 14 + 124595110 TTCTACCCTGTTCA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 51804 14 -  40214260 TTCTTCCATGCTCC
i canFam3.chr30             C 0 C 0
e proCoq1.NW_012149419v1       649139 51 -   2566024 I
e dasNov3.JH569975              44612 191 -   2180720 I

a score=537116.000000
s hg38.chr15_KI270850v1_alt    194328 42 +    430880 TCTGCTCTTCACATCCTG-GAACC-ACCTGCTGATCCCTG-TATA
s panTro5.chr15              18003984 42 -  83230942 TCTGctcttcacatcctg-gaacc-acctgctgatccctg-tata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230285 42 -  99763055 TCTGctcttcacatcctg-gaacc-acctgctgatccctg-tata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292932 42 +    378907 TCTGctcttcacatcctg-gaacc-acctgctgatccctg-tata
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148484 42 + 121039945 TCTGCTCTTCGCATCCTG-GAACC-ACCTGCTGATCCCTG-TATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359436 41 + 169600520 TCTGctcttcacatcct--gaacc-acctgctgatccctg-tata
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107346264 41 - 171882078 TCTGCTCTTCACATCCT--GAACC-ACCAGCTGATCCCTG-TATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355546 42 -   6271500 tctgctcttcacatcctg-gaacc-acctgctgatccctg-tata
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1815153 41 -   1987038 TCTGctcttcacatcct--gaacc-accagctgatccctg-tata
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065925 41 -  24206276 TCTGCTCTTCACATCCT--GAACC-ACCTGCTGATCCCTG-TATA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       299317 41 -   1458659 TCTGCTCTTCACATCCT--GAACC-ACCTGCTGATCCCTG-TATA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474938 42 -   9444221 TCTTCTCTTCACATCCTG-GAACC-ACCTGCTGATCCCTG-TATA
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             511287 42 -   3282555 TCTGCTCTTCACATTCTG-GAACC-ACCTGCTGATCCCTG-TATA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       296822 42 -   1024465 TCTGCTCTTCACATTCTG-GAACC-ACCCGCTGATCCCTG-TATA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       742115 42 -   3745603 TCTGCTCTTCACATTCTG-GAACC-ACCTGCTGATccttg-tata
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 925379 42 - 119751181 TCTGCTCTCCATATCCTG-GACCC-ACCTGCTGGCCCCTG-TATG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       649190 42 -   2566024 TCTGCTCTCCATATCCTG-GACCC-AGCTGCTGGTCCCTG-TATG
i proCoq1.NW_012149419v1    I 51 C 0
s otoGar3.GL873530            6766038 35 -  36342412 TCTGCTCTTCATAT--------CC-ACCTGCTGGCCCCTG-TGTA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55180778 42 + 124595110 TCTGTTCTTCACATCTTGAAAACA-AACTGCTG-TCTCTG-TATA
i mm10.chr9                 C 0 I 453
s canFam3.chr30                 51818 43 -  40214260 TGTGCTTTTTACGTGCTG-GAATTAACCTGCTACTCATTGTTAT-
i canFam3.chr30             C 0 C 0
e dasNov3.JH569975              44612 191 -   2180720 I

a score=249815.000000
s hg38.chr15_KI270850v1_alt    194370 28 +    430880 TGCCCC-TTTCCAGCTTGTCTATGCTGTG
s panTro5.chr15              18004026 28 -  83230942 tgcccc-tttccagcttgtctatgctgtg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230327 28 -  99763055 tgcccc-tttccagcttgtctatgctgtg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       292974 28 +    378907 tgcccc-tttccagcttgtctatgctgtg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148526 28 + 121039945 TGCCCC-TTTCCAGCTTGTCTATGCTGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359477 27 + 169600520 tgcccc-tttcca-gctgtctatgctgtt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107346305 27 - 171882078 TGCCCC-TTTCCA-CCTGTCTATGCTGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355588 28 -   6271500 tgcccc-tttccagcttgtctatgctatt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1815194 27 -   1987038 tgcccc-tttcca-gctgtctatgctgtt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065966 27 -  24206276 TGCCCC-TTTCCA-GCTGTCTATGCTGTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       299358 27 -   1458659 TGCCCC-TTTCCA-GCTGTCTCTGCTGTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7474980 28 -   9444221 TGCCCC-TTTCCAGCCTGTTTATGTTGTT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             511329 28 -   3282555 TGCCCC-TTTCCAGCCTGTTGATGCCGTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       296864 29 -   1024465 TGCCCCATTTCCAGCCTGTTGATGCTGTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       742157 28 -   3745603 tgcccc-tttccagcctgttgatgctgtt
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 925421 28 - 119751181 TGCCCA-TTTCCAGCCTGTTTAAGCTGTT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       649232 28 -   2566024 TGCCCG-TTTCCAGCCTGTTTAAGCTGTT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6766073 22 -  36342412 TGCTCA-TTG------TTTTGAAGGTATT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 51861 17 -  40214260 GGCTCC-TTTCCAGCCTA-----------
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55180820 453 + 124595110 I
e dasNov3.JH569975              44612 191 -   2180720 I

a score=993549.000000
s hg38.chr15_KI270850v1_alt    194398 94 +    430880 TTCTCTGCTTACCTTCTTTCTGTGGCATCTG-TAAATTCAAGTTCATTCTTTCCTACAAAACACAACTCAAATTATTTCTCCTTCATGAAGCTGA-
s panTro5.chr15              18004054 94 -  83230942 ttgtctgcttaccttccttctgtggcatctg-tatattcaagttcattctctcctacaaaacacaactcaaattatttctccttcatgaagctga-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230355 94 -  99763055 ttgtctgcttaccttccttctgtggcatctg-tatattcaagttcattctctcctacaaaacacaactcaaattatttctccttcatgaagctga-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       293002 94 +    378907 ttctctgcttaccttctttttgtggcatctg-taaattcaaattcattctttcctacaaaacacagctcaaattatttctccttcatgaagctga-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148554 93 + 121039945 TTCTCTGCTTACCTTCCTTCTGTGGCATCTG-TAAATTCAAGTTCATTCTTTCCTACAAAACACAAC-CAAATTATTTCTCCTTCGTGAAGCTGA-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359504 94 + 169600520 ttctctgctgaccttccttctgtggcatctg-tatattcaaattcattctctcctacaaaacacaactcaaattatttctccttcatgaagctga-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107346332 94 - 171882078 TTCTCTGCTGACCTTCCTTCTGTGGCATCTG-TACATTCAAATTCATTCTCTCCTACAAAACACAACTCAAATTATTTCTCCTTCATGAAGCTGA-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355616 94 -   6271500 ttctctgctgaccttccttctgtagcatctg-tacattcaaattcattctctcctacaaaacacagctcaaattatttctccttcatgaagctga-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1815221 94 -   1987038 ttctctgctgaccttccttctgtggcatctg-tatattcaaattcattctctcctacaaaacacaactcaaattatttctccttcatgaagctga-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21065993 94 -  24206276 TTCTCTGCTGACCTTCCTTCTGTGGCATCTG-TACATTCAAATTCATTCTCTCCTACAAAACACAACTCAAATTATTTCTCCTTCATGAAGCTGA-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       299385 94 -   1458659 TTCTCTGCTGACCTTCCTTCTGTGGCATCTG-TACATTCAAATACATTCTCTGCTACAAAACACAACTCTAATTATTTCTCCTTCATGAAGCTGA-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7475008 94 -   9444221 TTCTCTGCTTACCTTCCTTCTGTGGCATCTG-TATATTCAAATTCATTCTCTCCTACAAAGCACAACTGAAATTATTTCTCCTTCATGAAGCTGA-
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             511357 94 -   3282555 TTCTCTGCTTACCTTCCTCCCATGGGATCTG-TATGTTCAAATTAATACTCTTCTACAAAATACAATTCAAATTCTTCCTCCTAGGTGAAGCTGA-
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       296893 94 -   1024465 TTCTCTGCTTGCCTTCCTCCCATGGAATCTG-TATATTCAAATTAATCCTCTTCTACAAAATACAATTCAAGTTCTTTCTCCTTTGTGAAGCTGA-
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       742185 94 -   3745603 ttctctgcttaccttcctcccatgggatctg-tatattcaaattaatcctcttcaacaagacacaattcaagttctttctcctttgtgaagctga-
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 925449 94 - 119751181 TTCTCTGCTTACCTTCCGCCTGCGGGATCTG-CATATTCGAGTTCAGTCTCTCTGATAAAATGCA-TTCATGTTCTTTCTCCTCCATGAAGCTGAC
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       649260 92 -   2566024 TTCTCTGCTTACCCTCCTCCTGCGGGATCTG-TATATTCAAGTTCGG--TCTCTGACAAAATGCA-TTCATATTCTTTCTCCTCCATGAAGCTGAC
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6766095 43 -  36342412 TTCTCTGCTTACC-----------------------------------------------------TTCAAATTCTTTCACCTCCATGAAGCTGAC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55181273 91 + 124595110 TGCTGTACTTACTCCCGTACCATAGGTTCTGTTGTGTTCAGATTCAG---CCCCTGCAAACTATTACTCTGCCT-CTGCTCTCCCTTAAACCCGA-
i mm10.chr9                 I 453 C 0
s canFam3.chr30                 51878 88 -  40214260 TTTTATGCTTACC---CTTCTGTGAGATCTG-TGTATTTAGATTCAGTGTCTTCTACAAAGTACAGTTTAAACT----CTTCCCCACCAAGCTGCC
i canFam3.chr30             C 0 C 0
e dasNov3.JH569975              44612 191 -   2180720 I

a score=640296.000000
s hg38.chr15_KI270850v1_alt    194492 47 +    430880 CTTTGACCCATCCTGCTCTGACCAAACCAAAAGTAATGTTTCTCTTT---------------------------
s panTro5.chr15              18004148 47 -  83230942 ctttgatccatcctgctctgaccAAACCAAAAGTAGGGTTTCTCTTT---------------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230449 47 -  99763055 ctttgatccatcctgctctgaccAAACCAAAAGTAGGGTTTCTCTTT---------------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       293096 47 +    378907 ctttgacccatcctgctcTGACCAAACCAAAAGTAATGTTTCTCTTT---------------------------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148647 47 + 121039945 CTTTGATCCATCCTGCTCTGACCAAACCAAAAGCAATGTTTCTCTTT---------------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359598 47 + 169600520 cttcgatccatcctgctctgaccAAACCAAAAGTAATGTTTCTCTTT---------------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107346426 47 - 171882078 CTTTGGTCCATCCTGCTCTGACCAAACCAAAAGTAATGTTTCTCTTT---------------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355710 47 -   6271500 ctttgatccatcctgctctcacCAGACCAAAAGTAATGTTTCTCTTT---------------------------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1815315 47 -   1987038 cttcgatccatcctgctctgaccAAACCAAAAGTAATGTTTCTCTTT---------------------------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21066087 47 -  24206276 CTTTGGTCCATCCTGCTCTGACCAAACCAAAAGTAATGTTTCTCTTT---------------------------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       299479 47 -   1458659 CTTTGGTCCATCCTGCTCTGACCAAACCAAAAGTAATGTTTCTCTTT---------------------------
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7475102 47 -   9444221 CTTTGGTCCATCTTGCTCTGACCAAATCAAAAGTAATTCTTCTCTTT---------------------------
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             511451 47 -   3282555 CTTTGATCTGTCCTACTCTGACTCAACCAAAAGTAATTTTTCTCTTT---------------------------
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       296987 47 -   1024465 CTTTGGTCTGTCCTGCTCTGACTCAACCAAAAGTAATTTTTCTCTTT---------------------------
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       742279 47 -   3745603 ctttggtctgtcctgctctgactcaaccaaaagtaatttttctcttt---------------------------
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 925543 46 - 119751181 CTCTGGTTTGTCCTGTCTTGACCAAACC-AAAGTAATTTTTCTCTTT---------------------------
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       649352 47 -   2566024 CTCTGGTCTGTCCTGTCGTGACCAAACCAAAAGTAATTTTTCTCTTT---------------------------
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6766138 47 -  36342412 CCTTGGTCTGTCCCATCTTGACCCAACCAAAAGTAATTTTTCTCTTT---------------------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55181364 47 + 124595110 CCTCTGTCTTTTGCACCCTAACCAACTCAAAAGTAACTTTTCTCTTT---------------------------
i mm10.chr9                 C 0 I 163
s canFam3.chr30                 51966 45 -  40214260 CTCCGATCTCTTGTGCTCTAACGAAGCCAGAAGTA-TTTTTTTCTT----------------------------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              44803 74 -   2180720 CTCTGATCTCTTCTGCTCTAACCAAACCAAAAGTAATTTTTCTCTTGAATTTCTGTAGTATTTTTCTTCTCTTT
i dasNov3.JH569975          I 191 C 0

a score=40110.000000
s hg38.chr15_KI270850v1_alt    194539 2 +    430880 TG
s panTro5.chr15              18004195 2 -  83230942 TG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230496 2 -  99763055 TG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       293143 2 +    378907 TG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148694 2 + 121039945 TG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359645 2 + 169600520 TG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107346473 2 - 171882078 TG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355757 2 -   6271500 TG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1815362 2 -   1987038 TG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21066134 2 -  24206276 TG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       299526 2 -   1458659 TG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7475149 2 -   9444221 TG
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             511498 2 -   3282555 TG
i saiBol1.JH378276          C 0 I 611
s cebCap1.NW_016107979v1       297034 2 -   1024465 TG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       742326 2 -   3745603 tg
i aotNan1.NW_018511953v1    C 0 I 305
s micMur3.chr3                 925589 2 - 119751181 TG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       649399 2 -   2566024 TG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6766185 2 -  36342412 TG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55181574 2 + 124595110 TG
i mm10.chr9                 I 163 C 0
s canFam3.chr30                 52011 2 -  40214260 TG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              44877 2 -   2180720 TG
i dasNov3.JH569975          C 0 C 0

a score=80768.000000
s hg38.chr15_KI270850v1_alt    194541 7 +    430880 ACTTAAC
s panTro5.chr15              18004197 7 -  83230942 ACTTAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230498 7 -  99763055 ACTTAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       293145 7 +    378907 ACTTAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148696 7 + 121039945 ACTTAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359647 7 + 169600520 ACTTAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107346475 7 - 171882078 ACTTAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355759 7 -   6271500 ACTTTAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1815364 7 -   1987038 ACTTAAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21066136 7 -  24206276 ACTTAAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       299528 7 -   1458659 ACTTAAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7475151 7 -   9444221 ACTTTAC
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             512111 7 -   3282555 ACTTAAT
i saiBol1.JH378276          I 611 C 0
s cebCap1.NW_016107979v1       297036 7 -   1024465 ACCGAAC
i cebCap1.NW_016107979v1    C 0 I 304
s aotNan1.NW_018511953v1       742633 7 -   3745603 ACTTAAT
i aotNan1.NW_018511953v1    I 305 C 0
s micMur3.chr3                 925591 6 - 119751181 ACTTAA-
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       649401 6 -   2566024 ACTTAA-
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6766187 6 -  36342412 ACTTAA-
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55181576 7 + 124595110 ATTTAAC
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 52013 7 -  40214260 ACTTAAC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              44879 7 -   2180720 ACTTAAC
i dasNov3.JH569975          C 0 C 0

a score=1806748.000000
s hg38.chr15_KI270850v1_alt    194548 154 +    430880 ATCTCTTTTATGTGAAGCGGC---A--GG---ATGGGAAAGGAACAC-TGAGTTTGGTGACAGACACaccttttatggtttcactttgctcaaccctaaaatatggagagacagtacatatcttttggatggttgctatgaaaaat-a--aattaaaatgat---gcat
s panTro5.chr15              18004204 154 -  83230942 ATCTCTTTTATGTGAAGCGGC---A--GG---ATGGGAAAGGAACAC-TGAGTTTGGTGACAGACACaccttttatggtttcactttacacaactctaaaatatggatagacagtacatatcttttggatggttgctatgaaaaat-a--aattaaaatgat---gcat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230505 154 -  99763055 ATCTCTTTTATGTGAAGCGGC---A--GG---ATGGGAAAGGAACAC-TGAGTTTGGTGACAGACACaccttttatggtttcactttacacaactctaaaatatggatagacagtacatatcttttggatggttgctatgaaaaat-a--aattaaaatgat---gcat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       293152 154 +    378907 ATCTCTTTTATGTGAAGCGGC---A--GG---ATGGGAAAGGAACAC-TGAGTTTGGTGACAGACACaccttttatggtttcactttgctcaaccctaaaatatggatagacagtacatatcttttggatggttgctatgaaaaat-a--aattaaaatgat---gcat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148703 153 + 121039945 ATCT-TTTTATGTGAAGCGGC---A--GG---ATGGGAAAGGAACAC-TGAGTTTGGTGACAGACACacctttcatggtttcactttgctgaactctaaaatatggatagagagtacatatcttttggatggttgctatgaaaaac-a--aattaaagtgat---gcac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359654 154 + 169600520 ATCTCTTTTATTTAAAGTGGC---A--GG---ATGGGAAAGGAACAC-TGAGTTTGGTGACAGACACACCTTGTATGgtttcactttgctcaactctaaaatatggttagacagtacataccttttgggtgattgctatgaaaaat-a--aatgagaattaa---ctgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107346482 151 - 171882078 ATCTCTTTTAGGTGAAGCGGC---A--GG---ATGGGAAAGAAACAC-TGAGTTTGGAGACAGACACA---TGTATGgtttcactttgctcaactctaaaatatggttagacagtacatatcttttggatggttgctatgaaaaat-a--aattaaaatgat---gtat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355766 153 -   6271500 ATCTC-TTTATGTGAAGCAGC---A--GG---ATGGGAAAGGAACAC-TGAGTTTGGTGACAAACACActttgtatggtttcacttttctcaactctaaaatatggatagacagtacatatcttttggatagttgctatgaaaaat-a--aattaaaattct---acat
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1815371 154 -   1987038 ATCTCTTTTATTTAAAGTGGC---A--GG---ATGGGAAAGGAACAC-TGAGTTTGGTGACAGACACACCTTGTATGgtttcactttgctcaactctaaaatatggttagacagtacttaccttttgggtgattgctatgaaaaat-a--aatgagaattaa---ctgt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21066143 151 -  24206276 ATCTCTTTTAGGTGAAGCAGC---A--GG---ATGGGAAAGGAACAC-TGAGTTTGGAGACAGATACG---CATATGgtttcacttcgctcaactctaaaatatggttagacagtacatatcttttggatggttgctatgaaaaat-a--aattaaaatgat---gcat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       299535 151 -   1458659 ATCTCTTTTAGGTGAAGCGGC---A--GG---ATGGGAAAGAAACAC-TGAGTTTGGTGACAGACACA---CGTATGGTTTCACTTTGCTCAACTCTAAAATATGGTTAGACAGTACATATCTTTTGGATGGTTGCTATGAAAGAT-A--AATTAAAATGAT---GTAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7475158 154 -   9444221 ATCTCTTTTATGTGAAGCAGC---A--GG---ATGGGAAAGGAACAC-TGAGTTTGGTGACAAACACACATTTTTTGGTTTCACTTTGCTCAGCTCTAAAATATAGATAGACAGTACATACCTTTTGGATGACTGCTATGAAAAAT-A--AACAAGAATGAT---GTGT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             512118 152 -   3282555 ATCTCTTTTATGTGAAGCAGC--AA--AA---ATGTGAAAG-AACAC-tgagtttggtgacaaacacaccttttatggtttctctttcctcaactctaaaatatggctagacagtacataccttttggatgattgctatg-aaaa--a--aatgagaatgat---gtgt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       297347 153 -   1024465 ATCTCTTTTATGTGAAGCAGC---A--GG---ATGTGAAAG-AACACTTGAGTTTGGTGACAAACACaccttttatggtttcactttcctcaactctaaaatatggctagacagtacataccttttggatgactgctatgaaaaa--a--aatgagaatgat---atgt
i cebCap1.NW_016107979v1    I 304 C 0
s aotNan1.NW_018511953v1       742640 152 -   3745603 ATCTCTTTTATGTGAAGCAGC---A--GG---ATGTGAAAG-AACAC-TGAGTTTGGTGACAAACACaccttttatggtttcactttcctcaactctaaaatatggctagacaatatataccttttggatgattgctatgaaaaa--a--aatgagaatgat---gtgt
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 925597 146 - 119751181 ATCTC-TTTATGTGAAGCAGC---A--GAGGAGTGTGAAGTGAACAC-TGGGTTTGTTGACAAATACATcttttgtgacttcagtttcttcaactctaaaatgtg----gacaatgcataccttttggatgattgctgtgaaaaat-a--aatgagaacg---------
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       649407 142 -   2566024 ATCTCTTTTATGTGAAGCAGC---A--GAGGAAT-----GTGAACAC-TGAGTTTAGTGACAAACACATCTTTTGCGgcttcagtttcttcaactctaaaatgtg----gacaatacataccttttggatgattgctgtgaaaaat-a--aatgagaatg---------
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6766193 147 -  36342412 ATCCCTTTTATGTGAAGCAGC---A--GAGGTGTGTGGAATGAACAC-TAAATTTGGTggcaaacacatcttttgtggctttaatttcttcagctctaaaatgtg----gacaatacatatccttgggattattgctgtgaaaaat-aagaataagaa-----------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55181583 154 + 124595110 ATACTATTTATGAGAAGAAAC---A--TG---GCAATATAA-GATGC-ATAGTTTAGTGAAAAACATGCA-TGTGTGGCTTTGGATTGTTCAACTTTAAAATGTAGTCAGACAGTATATACCTTTTGGAAGTCT--TGTGAAAAATGA--AAATGGGTTGGTAGGGTAT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 52020 138 -  40214260 ATCTCTTTTATGTGAAGTGGA---ATGGG---GCGTGAAATGAACAG-TGAGTCTGGTAATAGACACAAc----------tcagtttcctcaactctaaaatatg----gataatacatactttttggttgattgctgagaagaat-a--aatgagaacgat-------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              44886 152 -   2180720 ATCACTTTTATTTTAGGCAGCTATG--GG---GAGTGAAATGAACAC-TGGGTTTGGTAACAAAT-Cacctgtgttggtatcagtttccttaactctaaaatgtg----gacaatacatattttttggatgactgctatgaagaat-a--aatgagaataat---gtat
i dasNov3.JH569975          C 0 I 293

a score=320708.000000
s hg38.chr15_KI270850v1_alt    194702 34 +    430880 gtatatacata------aaatgcttagacagagtagggaa
s panTro5.chr15              18004358 33 -  83230942 gt-tacacata------aaatgcttagacagAGTAGGGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230659 33 -  99763055 gt-tacacata------aaatgcttagacagAGTAGGGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       293306 34 +    378907 gtatatacata------aaatgcttagacagagtagggaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148856 34 + 121039945 gtatatacata------aagtgcttagacagAGTAGGGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359808 30 + 169600520 gtgtatacata------aaatacttaga----gtagGGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107346633 34 - 171882078 gtatatacaaa------aaatgcccagacagagtaggGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355919 34 -   6271500 gtatacacata------aaatgcttagacagtgTAGGGAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1815525 30 -   1987038 gtgtatacata------aaatacttagA----GTAGGGAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21066294 34 -  24206276 gtaTATACAAA------AAAGGCCTAGACAGAGTAGGGAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       299686 34 -   1458659 GTATATACAAA------AAATGCCTAGACAGAGTAGGGAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7475312 34 -   9444221 GTATACACATA------AAAAGCTCAGTCAGAGTAGGGAA
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             512270 30 -   3282555 gcatatatata------aaatgct----cagagtagGGAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       297500 34 -   1024465 gcatatatata------aaatgctcagacagAGTAGGGAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       742792 34 -   3745603 gtatatatgta------aaatgctcagacagAGTAGGGAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 925743 30 - 119751181 ----atatata------aaatgcccagacagAATAGGGAA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       649549 36 -   2566024 ----atgtatacatgtgaaatgcccagacagAATAGGGGA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6766340 30 -  36342412 ----atacata------aaatgctcagacagAATAGGGAA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55181737 27 + 124595110 GTCAATGC-CA------ATATGCATTGGCAGTCT------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 52158 26 -  40214260 ----gcatata------aaatgcC----CAAAGTAGGGAA
i canFam3.chr30             C 0 C 0
e dasNov3.JH569975              45038 293 -   2180720 I

a score=124795.000000
s hg38.chr15_KI270850v1_alt    194736  9 +    430880 acat---caaat
s panTro5.chr15              18004391  9 -  83230942 ACAT---CAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230692  9 -  99763055 ACAT---CAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       293340  9 +    378907 acat---caaat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148890  9 + 121039945 ACAT---CAAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359838  9 + 169600520 ACAT---CAAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107346667  9 - 171882078 ATAT---CAAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355953  9 -   6271500 ATAT---CAGAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1815555  9 -   1987038 ACAT---CAAAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21066328  9 -  24206276 ATAT---CACAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       299720  9 -   1458659 ATAT---CAAAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7475346  9 -   9444221 ACAT---CAAAT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             512300  9 -   3282555 ACAT---CAAAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       297534  9 -   1024465 ACAT---CAAAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       742826  9 -   3745603 ACAT---CAAAT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 925773  9 - 119751181 ACAT---CAAAT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       649585  9 -   2566024 ACAT---CAAAT
i proCoq1.NW_012149419v1    C 0 I 72
s otoGar3.GL873530            6766370  9 -  36342412 ACAT---CAGAT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 52184 12 -  40214260 ACGTGTACAAGT
i canFam3.chr30             C 0 I 6
s dasNov3.JH569975              45331  9 -   2180720 ATAC---CAAAT
i dasNov3.JH569975          I 293 C 0
e mm10.chr9                  55181764  0 + 124595110 C

a score=112069.000000
s hg38.chr15_KI270850v1_alt    194745 9 +    430880 gatTGTCTG
s panTro5.chr15              18004400 9 -  83230942 GATTGTCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230701 9 -  99763055 GATTGTCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       293349 9 +    378907 gatTGTCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148899 9 + 121039945 GATTGTCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359847 9 + 169600520 GATTGTCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107346676 9 - 171882078 AATTGTCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355962 9 -   6271500 GTTTCTCTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1815564 9 -   1987038 GATTGTCTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21066337 9 -  24206276 AATTGTCTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       299729 9 -   1458659 AATTGTCTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7475355 9 -   9444221 GATTGTCTG
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             512309 9 -   3282555 GATTATCTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       297543 9 -   1024465 GATTGTCTG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       742835 9 -   3745603 GATTATCTG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 925782 9 - 119751181 GATAGTCTG
i micMur3.chr3              C 0 I 572
s otoGar3.GL873530            6766379 9 -  36342412 GGTAGTCTG
i otoGar3.GL873530          C 0 I 12
s mm10.chr9                  55181764 9 + 124595110 GGTTGTCTG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 52202 9 -  40214260 ATTTGCCTC
i canFam3.chr30             I 6 C 0
s dasNov3.JH569975              45340 9 -   2180720 GATGGTCAG
i dasNov3.JH569975          C 0 I 13
e proCoq1.NW_012149419v1       649594 72 -   2566024 I

a score=505056.000000
s hg38.chr15_KI270850v1_alt    194754 51 +    430880 AACAGTTAC----TGCTTCCTGCCTTGTATTAGAGCTATTTACCAA-CT------------CCACAAC
s panTro5.chr15              18004409 51 -  83230942 AACACTTAC----TGCTTCCTGCCTTGTATTAGAGCTATTTACCAA-CT------------CCACAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230710 51 -  99763055 AACACTTAC----TGCTTCCTGCCTTGTATTAGAGCTATTTACCAA-CT------------CCACAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       293358 51 +    378907 AAAAGTTAC----TGCTTCCTGCCTTGTATTAGAGCTATTTACCAA-CT------------CCACAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148908 51 + 121039945 AACACTTCC----TGCTTCCTGCCTTGTATTAGAGCTATTTACCAA-CT------------CCACAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359856 51 + 169600520 AACACTTAC----TGCTTCCTGCCTTGTATTAGAGCTATTTACTAA-CT------------CCATGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107346685 51 - 171882078 AACACTTAC----TGCTTCTTGCCTTGTACTAGAGCTATTTACCAA-CT------------CCACAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5355971 51 -   6271500 AACACTTAC----TGCTTCCTGCCTTGTATTAGAGCTATTTACTGA-CT------------CTGCAAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1815573 51 -   1987038 AACACTTAC----TGCTTCCTGTCTTGTATTAGAGCTATTTACTAA-CT------------CCATGAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21066346 51 -  24206276 AACACTTAC----TGCTTCCTGCCTTGTACTAGAGCTATTTACCAA-CT------------CCACAAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       299738 51 -   1458659 AACACTTAC----TGCTTCTTGCCTTGTACTAGAGCTATTTACCAA-CT------------CCACAAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7475364 51 -   9444221 AACACTTAC----TACTTCCTGCCTTGTATTAGAGCCATTTACCAA-CT------------CCACAAA
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             512318 51 -   3282555 GACACTTAC----TATTTCCTGCCTTGTATTAGGGCTATTTACCAA-CT------------CCACAAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       297552 51 -   1024465 AACACTTAC----TACTTCCTGCCTTTTATTAGGGCTATTTACCAA-CT------------CCACGAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       742844 51 -   3745603 AACACTTAC----TACTTCCTGCCTTGTATTAGGGCTATTTACCAA-CT------------CCAAGAA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6766400 28 -  36342412 AACACTC--------CTTCCCCC-------------------CCCA-CC------------CCCCATG
i otoGar3.GL873530          I 12 I 2
s mm10.chr9                  55181773 44 + 124595110 -ACA-----------CTTCCTACCTTGTTTTAGAGCAGCTTATTAAGCT------------CTATAAA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 52211 55 -  40214260 AACACTTCCGACTTACTTACTGCCTTCCATTAGAGCTGTTTATCCA-AC------------CCATGAC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              45362 63 -   2180720 AACACTTAC----CACTTCCTGCCTTATACTGGAGCTATTTATGAA-CTAGTTTGTCATCCCCATGAA
i dasNov3.JH569975          I 13 C 0
e micMur3.chr3                 925791 572 - 119751181 I
e proCoq1.NW_012149419v1       649594 72 -   2566024 I

a score=1566790.000000
s hg38.chr15_KI270850v1_alt    194805 130 +    430880 ATCCGAGGACCAGTTACTTTGTCTTGGGCACAGGTTCTCCAAAACAGGGAATGAATTGTTAGGCAAGCAAATGCCAGATGT---TGAAATC----AGATAACTCTCCC-TCCTTCAATCTTATTT-GTATATTAATTTA
s panTro5.chr15              18004460 134 -  83230942 ATCCGAGGACCAGTTACTTTGTCTTGGGCACAAGTTCTCCAAAACAGGGAATGAATTGTTAGGCAAGCAGATGTCAAGTGT---TGCAATCAGATAGATAACTCTCCC-TCCTTCAATCTTATTT-GTATATTAATTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230761 134 -  99763055 ATCCGAGGACCAGTTACTTTGTCTTGGGCACAAGTTCTCCAAAACAGGGAATGAATTGTTAGGCAAGCAGATGTCAAGTGT---TGCAATCAGATAGATAACTCTCCC-TCCTTCAATCTTATTT-GTATATTAATTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       293409 130 +    378907 ATCCGAGGACCAGTTACTTTGTCTTGGGCACAGGTTCTCCAAAACAGGGAATGAATTGTTAGGCAAGCAAATGCCAGATGT---TGAAATC----AGATAACTCTCCC-TCCTTCAGTCTTATTC-GTATATTAATTTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102148959 134 + 121039945 ATCCGAGGACCAGTTACTTTGTCTTGGGCGCAGGTTCTCCAAAACAGGGAATGAATTGTTAGGCAAGTAGATGCCAAATGT---TGAAATCAGATAGATAACTCTGCC-TCCTTCAATCTTATTT-GTATATTAATTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60359907 134 + 169600520 AGCTGAGGACCAGTTACTTTGTATTGGGCACAGGTTCTCCAAAACAGGGAATGAATTGCTAGGCAAGTAGATGCCAAATGT---TGAAATCAGATAGATAACTCTCCC-TCCTTCAATCTTGTTT-ATATATTAATTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107346736 134 - 171882078 ATCCGAGGACCAGTTACTTTGTCTTGGGCACAGGTTCTCCAAAGCAGGGAATGAATTGTTAAGCAAGTAGATATCAAATGT---TGAAATCAGATAGATAACTCTCCC-TCCTTCAATCTTGTTT-ATATGTTAATTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356022 134 -   6271500 ATCTGAGGACCAGTTACTTTGTCTTGGGTACAGGTTCTCCAAAACAGGGAATGAATTGTTAGCCAAGTAGATGCCAAATGT---TGAAATCAGATAGCTAACTCTCCC-TCCTTCAATCTTCTTT-ATATATTAATTTA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1815624 134 -   1987038 AGCTGAGGACCAGTTACTTTGTATTGGGCACAGGTTCTCCAAAACAGGGAATGAATTGCTAGGCAAGTAGATGCCAAATGT---TGAAATCATATAGATAACTCTCCc-tccttcaatcttgttt-atatattaattta
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21066397 134 -  24206276 ATCCGAGGACCAGTTACTTTGTCTTGGGCACAGGTTCTCCAAAACAGGGAATGAATTGTTAGGCAAGTAGATGCCAAATGT---TGAAATCAGATAGATAACTCTCCC-TCCTTCCATCTTATTT-ATATGTTAATTTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       299789 134 -   1458659 ATCCGAGGACCAGTTACTTTGTCTTGGGCACAGGTTCTCCAAAACAGGGAATGAATTGTTAAGCAAGTAGATGCCAAATGT---TGAAATCAGATAGATAACTCTCCC-TCCTTCCATCTTATTT-ATATGTTAATTTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7475415 130 -   9444221 ATCCGAGGACAAGTTACTTTGTCTTGGGTACAGATTCTCCAAAACAGGGAATGAATTGTTAGGCAAGTAGATGCCAAATGT---TGAAACTGGATAGATTACTCTCCC-TCCTTCAATCTTAGTT-ATAT----ATTTA
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             512369 134 -   3282555 ATCTGAGAACCAGTTACTTTGTCTTGGGCACAGGTTCTCCAAAACAGGGAGTGAATTGTTAGGCAAGTAGCTATCAAGTGT---TGAAACCAGTTAGATTACTCTCAC-TCCTTCAATCttattt-atatattatttta
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       297603 134 -   1024465 ATCTGAGGACCAGTTACTTTGTCTAGGGCACAGGTTCTCCAAAACTGGGAATGAATTGTTAGCCAAGTAGACGCCAAGTGT---TGAAACCAGTTAGATTACTCTTCC-TCCTTCAATCTTATTT-ATATATTATTTTA
i cebCap1.NW_016107979v1    C 0 I 19
s aotNan1.NW_018511953v1       742895 134 -   3745603 ATCTGAGGACCAGTTACTTTGTCTTGGGCACAGGTTCTCCAAAACAGTGAATGAATTGTTAGGCAAATAGATGCCAAGTGT---TGAAACCAGTTAGATTACTCTCCC-TCCTTCAATCTTATTT-ATATATTATTTTA
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       649666 135 -   2566024 ATCTGAGAACCAGTTACTTTGTTTTGGGCACAGGTTTCCAGATATAGGGAATGAATTGCTACACAAGTAGATGCCAAGCAT---TGAAAACTGgtagattactctccc-tccttcattcttatttagtgtgttaattta
i proCoq1.NW_012149419v1    I 72 C 0
s otoGar3.GL873530            6766430 128 -  36342412 CTCTGAGGACCTGTTGGTTTGTTTTAGGCACAGCTTTTCAAACA-AGGGAATG-------GTGAAAGTAGACACCAAGTGT---TGAAACTTGGTAGATTATTCCCCCATTCTTCATTCTTATTTCGTACATTAGTTTA
i otoGar3.GL873530          I 2 C 0
s mm10.chr9                  55181817 126 + 124595110 --GTCAGGGCCAGCTGCTTTGTTTTAGGCA----------AACACAGTGAATGGATTGTTATACAAGTTAATGTCAAGAATGAATTATAACAAGTAAATTCTTTTCCT-TCCTTCAATCATATTTAATACACTATTTTA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 52266 125 -  40214260 ATCTGAGGACC------TTTGCTTTAGACACAGGTTCTCAGAAGCCAGGATTCAATTACTATGTAGGGAGATGCTAGATGT---TGTAAGGAGATAGATTAATCTCTC-TCCTTCTGTCTTA----CTGTATTAATTTA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              45425 127 -   2180720 ATCTGAGGACTAGTTTTTTTGTCTCGGGCACAGGTTCTCAAATGTAGGGTATTAGTTGTTATACAAGTAGATGCCAAATGT---TG--------TAAATATTGTTTAC-TTTTCaatttttatttactattttaattta
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 925791 572 - 119751181 I

a score=53563.000000
s hg38.chr15_KI270850v1_alt    194935 5 +    430880 ATTGG
s panTro5.chr15              18004594 5 -  83230942 ATTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230895 5 -  99763055 ATTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       293539 5 +    378907 ATTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149093 5 + 121039945 ATTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360041 5 + 169600520 ATTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107346870 5 - 171882078 ATTGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356156 5 -   6271500 ATAGG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1815758 5 -   1987038 attgg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21066531 5 -  24206276 ATTGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       299923 5 -   1458659 ATTGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7475545 5 -   9444221 ATTAG
i colAng1.NW_012112253v1    C 0 C 0
s proCoq1.NW_012149419v1       649801 5 -   2566024 attgg
i proCoq1.NW_012149419v1    C 0 I 396
s otoGar3.GL873530            6766558 5 -  36342412 ATTGG
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55181943 5 + 124595110 ATTGG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 52391 5 -  40214260 ATCGG
i canFam3.chr30             C 0 I 7
s dasNov3.JH569975              45552 5 -   2180720 attgt
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 925791 572 - 119751181 I
e aotNan1.NW_018511953v1       743029 0 -   3745603 C
e cebCap1.NW_016107979v1       297737 19 -   1024465 I
e saiBol1.JH378276             512503 0 -   3282555 C

a score=133470.000000
s hg38.chr15_KI270850v1_alt    194940 19 +    430880 -------TAATT-TTTC---ATACAGCAAA
s panTro5.chr15              18004599 19 -  83230942 -------TAATT-TTTC---ATACAGCAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230900 19 -  99763055 -------TAATT-TTTC---ATACAGCAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       293544 19 +    378907 -------TAATT-TTTC---ATACAGCAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149098 19 + 121039945 -------TAATT-TTTC---TTACAGCAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360046 19 + 169600520 -------TAATT-TTTC---ATAGAGCAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107346875 19 - 171882078 -------TAATT-TTTC---ATATGGCAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356161 19 -   6271500 -------TAGTT-TTTC---ATACAACAAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1815763 19 -   1987038 -------taatt-tttc---atagagcaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21066536 19 -  24206276 -------TAATT-TTTC---ATACGGCAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       299928 19 -   1458659 -------TAATT-TTTC---ATACGGCAAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7475550 19 -   9444221 -------TAATT-TTTC---ATAGAGGAAA
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             512503 19 -   3282555 -------taatt-ttta---GTAGAGCAAA
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       743029 19 -   3745603 -------TAATT-TTTA---GTAGAGCACA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6766564 22 -  36342412 -------TAATC-CTTCTTAATGGAACAAA
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  55181948 18 + 124595110 -------CAAGT-CTTT----TGTTGCAGA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 52403 19 -  40214260 -------TTTTT-TCTC---TTTTTAGAGA
i canFam3.chr30             I 7 C 0
s dasNov3.JH569975              45557 27 -   2180720 caaatcttatttatttt---ttaCAGTAAA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 925791 572 - 119751181 I
e proCoq1.NW_012149419v1       649806 396 -   2566024 I
e cebCap1.NW_016107979v1       297737 19 -   1024465 I

a score=999226.000000
s hg38.chr15_KI270850v1_alt    194959 132 +    430880 GAAATTTAGTTAATC--TCCATATCTTGATTATTTAAA-AAACTAAGATTGTAGCATTTGAATTAATGTTACT-----GTACTTCCTGTGTCTTGTGATCAATTCCAGTT--------TG---AGTTATCTTCAAAACAAGTAAAAATT-----AT
s panTro5.chr15              18004618 137 -  83230942 GAAATTTAGTTAATC--CCCATATCTTGATTATTTAAA-AAACTAAGATTGTAGCATTTGAATTAATGTTACT-----GTACTTTCTGTGTCTTGTGATCAAGTCCAGTT--------TG---AGTTATCTTCAAAACAAGTAAAAAttattgaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17230919 137 -  99763055 GAAATTTAGTTAATC--CCCATATCTTGATTATTTAAA-AAACTAAGATTGTAGCATTTGAATTAATGTTACT-----GTACTTTCTGTGTCTTGTGATCAAGTCCAGTT--------TG---AGTTATCTTCAAAACAAGTAAAAAttattgaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       293563 132 +    378907 GAAATTTAGTTAATC--CCCATATCTTGATTATTTAAA-AAACTAAGATTGTAGCATTTGAATTAATGTTACT-----GTACTTCCTGTGTCTTGTGATCAATTCCAGTT--------TG---AGTTATCTTCAAAACAAGTAAAAATT-----AT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149117 137 + 121039945 AAAATTTAGTTAATC--CCCATATCTTGATTATTTAAA-AAACTAAGATTGTAGCATTTGAATTAATGTTACT-----GTACTTTCTGTGTCTTGTGATCAATTCCAGTT--------TG---CGTTATCTTCAAAACAAGTAAAAAttactgaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360065 134 + 169600520 GAAATTTAGTCAATCCACCTATATCTTGATTATTTAAA-AAACTAAAACTGTAGCATTTGAATTAATGTTACT-----GTACTTTCTGTGTTTTGTGATCGATTCCAGTT--------TG---AGTTATCTTCAAAACAAGTATAAAtt-----at
i rheMac8.chr7              C 0 I 5
s macFas5.chr7              107346894 133 - 171882078 GAAATTTAGCCAATGC-CCCATATCTTGATTATTTAAA-AAACTGAGATTGTAGCATTTGAATTAATGTTACT-----GTTCTTTCTGTGTCTTGTGATCAATTCCAGTT--------TG---AGTTATCTTCAAAACAAGGATAAAtt-----at
i macFas5.chr7              C 0 I 5
s macNem1.NW_012011056v1      5356180 133 -   6271500 GAAATGTAGTTACTCC-CCCATATCTTGATTATTTACA-AAACTAAGATTGTAGCATTTGAATTAATGTCACT-----GTACATTCTGTGTCTTGTGATCAATTCCAGTT--------TG---AGTTATCTTCaaaagaagtataaatt-----at
i macNem1.NW_012011056v1    C 0 I 5
s cerAty1.NW_012002657v1      1815782 133 -   1987038 gaaattcagtcaatcc-cccatgtcttgattatttaaa-aaactaaaactgtagcatttgaattaatgttact-----gTACTTTCTGTGTTTTGTGATCGATTCCAGTT--------TG---AGTTATCTTCAAAACAAGTATAAAtt-----at
i cerAty1.NW_012002657v1    C 0 I 5
s chlSab2.chr29              21066555 133 -  24206276 GAAATTTAGCCAATCC-CCCATATCTTGATTATTTAAA-AAACTGAGATTGTAGCATTTGAATTAATGTTACT-----GTGCTTTCTGTGTCTTGTGATCAATTCCAGTT--------TG---AGTTATCTTCAAAACAAGGATAAAtt-----at
i chlSab2.chr29             C 0 I 5
s manLeu1.NW_012105520v1       299947 133 -   1458659 GAAATTTAGTCAATCC-CCCATATCTTGATTATTTAAA-AAACTAAGATTGTAGCATTTGAATTAATGTTACT-----GTTCTTTCTGTGTCTTGTGATCAATTCCAGTT--------TG---AGTTATCTTCAAAACAAGGATAAAtt-----at
i manLeu1.NW_012105520v1    C 0 I 3058
s colAng1.NW_012112253v1      7475569 128 -   9444221 GAAATTTAGTTAAATT-TCCATATCTTGATTGTTTAAA-ATACTAAGTTTGTAGCATTTGAATTAATGTTACT-----GTACTTTCTGTGTCTTGTGATCGATTCCGGT----------------TTATCTTCAAAACAAGTATAAAtt-----ct
i colAng1.NW_012112253v1    C 0 I 5
s aotNan1.NW_018511953v1       743048 131 -   3745603 GAAATTTAGTCAATC--CCCACATCTAGATTACTTAAA-AAACAAAGTTTGTATCATTTGAATTAGTGATAAC------TACTTTCCGTGCCTTGTGATTGATTCCAGTT--------TG---AGTTATAGTCAAAACaactataaatt-----ac
i aotNan1.NW_018511953v1    C 0 I 5
s otoGar3.GL873530            6766586 125 -  36342412 GAAATTTAGCCAAT---CTCATATCTTGATGATTAAAA-GA------TTTGTAGCATCTAGATTGATGATACT---------TTGTTGTGTCTTGTGATCATTTCTAGTTTG----TATG---AGCTGTAATCAAAACAGCTGTAAACT-----GT
i otoGar3.GL873530          C 0 I 5
s mm10.chr9                  55181966 128 + 124595110 GAACTTTAACCAAG---CCCATATCTTGATTATTAAAG-TAAGT---TTTGTAGCACCTGAATTAAT---ACT-----TTATTTGCTGTGTCTGATGATGGACTTCAGTT--------TGTATGGTTATAGTTAGAACATCTGCAAGCT-----AT
i mm10.chr9                 C 0 I 5
s canFam3.chr30                 52422 122 -  40214260 GTAATTTAGCTC-----TACTTATCTTGATTACCTAAA-AAAATC--CTTGTAGCATTTAAATTAATGA---T-----TTACTTTCTG----TCGTGATTGCTTTCAGTT--------TGTA-TATTATAGTCAAAATGActacgaatt-----at
i canFam3.chr30             C 0 I 5
s dasNov3.JH569975              45584 145 -   2180720 GAAATTTAGCACAA---CCCATATTTTGATTATAAAAGCAAAATAAATTTGTAGTATATGAGTTAATGATACTTTATTATACTTTCTGTATCTTACAATTGATTATACTTTGTTGATATG---AGTTATAGTCAAAACAATGATAAAtt-----at
i dasNov3.JH569975          C 0 I 5
e micMur3.chr3                 925791 572 - 119751181 I
e proCoq1.NW_012149419v1       649806 396 -   2566024 I
e cebCap1.NW_016107979v1       297737  19 -   1024465 I
e saiBol1.JH378276             512522   0 -   3282555 C

a score=825248.000000
s hg38.chr15_KI270850v1_alt    195091 114 +    430880 AATTTtgcatgaccgatactatactaaatactttatactaa-----------taaagatcttttcatttagtcatcata----------gccactgtgtgaaataggtgctgtttatacttt-agagatatgaaaa
s panTro5.chr15              18004755 120 -  83230942 aattttgtatgaccgatactatgctaaatactttatacttaatact-----ttatagatcttttcatttagtcatcata----------gccactgtgtgaaataggtgctatttatacttt-agagataggaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231056 120 -  99763055 aattttgtatgaccgatactatgctaaatactttatacttaatact-----ttatagatcttttcatttagtcatcata----------gccactgtgtgaaataggtgctatttatacttt-agagataggaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       293695 115 +    378907 AATTTtgcatgaccgatactatgctaaatactttatactaa-----------taaagatcttttcatttagtcgtcata----------gccactgtgtgaaataggtgctgtttatactttaagaggtaggaaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149254 113 + 121039945 aattttgcatgactgatactgtgctaaatactttatactt------------tatagatcttttcatttagtcatcata----------gccactgtgtgaaataggtgctgtttatatttt-agagataggaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360204 106 + 169600520 acttttgcatggccgatactatgctaa-------gtactt------------tatagatcttttcatttagtcttcata----------gccactgtgtgaaataggtgctctttatatttt-agagataggaaaa
i rheMac8.chr7              I 5 C 0
s macFas5.chr7              107347032 113 - 171882078 acttttgcatgaccgatactatgctaaatactttatactt------------tatagatcttttcatttattcatcata----------gccactgtgtgaaataggtgctcttcatatttt-agagataggaaaa
i macFas5.chr7              I 5 C 0
s macNem1.NW_012011056v1      5356318 106 -   6271500 atttttgcatgactgatactatgctaa-------atactt------------tatggatcttttcatttagtcatcata----------gccactgtgtgaaataggtactcttgatatttt-agagataggaaaa
i macNem1.NW_012011056v1    I 5 C 0
s cerAty1.NW_012002657v1      1815920 106 -   1987038 acttttgcatgaccgatactatgctaa-------gtactt------------tatagatcttttcatttagtcttcata----------gccactgtatgaaataggtgctctttatatttt-agagataggaaaa
i cerAty1.NW_012002657v1    I 5 C 0
s chlSab2.chr29              21066693 113 -  24206276 acttttgcatgaccgatactatgctaaatactttatactt------------tatagatcttttcatttagtcatcata----------gccactgtgtgaaataggtgctcttcatatttt-agagataggaaaa
i chlSab2.chr29             I 5 C 0
s manLeu1.NW_012105520v1       303138 113 -   1458659 acttttgcatgaccgatactatgctaaatactttatactt------------tatagatcttttcatttattcatcata----------gccactgtgtgaaataggtgctcttcatatttt-agagataggaaaa
i manLeu1.NW_012105520v1    I 3058 C 0
s colAng1.NW_012112253v1      7475702 113 -   9444221 acttttgcatgactgatactatgctaagtactttatactt------------tatatatcttctcatttagtcttcata----------gctgctgtgtgaaataggtgctcttcatatttt-agagataggagaa
i colAng1.NW_012112253v1    I 5 C 0
s aotNan1.NW_018511953v1       743184 113 -   3745603 acttttgcatgaccgatactttacaagatactttatactt------------catatatcttcacgtttaatcttcata----------gctaccatgtgaaataggtactcttcatatttt-agagataagaaaa
i aotNan1.NW_018511953v1    I 5 C 0
s otoGar3.GL873530            6766716  97 -  36342412 ACTGTCACATA---Tgtactgtgctaa-------gtactt------------ta------ttctcattcagtcttcata----------gccattgtatgaaataagtactctttatatttt-atagatatgaaaa
i otoGar3.GL873530          I 5 C 0
s mm10.chr9                  55182099 113 + 124595110 ACTCTGACATAG--AATA--AGgctaagtactttatatta------------------ccttcccatttcatcttcatagaatctttatgccattgtgggaaatagacattcttcatatctt-atagatacaaaaa
i mm10.chr9                 I 5 I 620
s canFam3.chr30                 52549  96 -  40214260 atttttgcaagagagacactaagctag-------gtactc------------ta----ccttccgatttaacctttgta----------gccactttataaaata----ttgttctta-ttc-ataggtgtgaaa-
i canFam3.chr30             I 5 C 0
s dasNov3.JH569975              45734 125 -   2180720 attttcatatgccagatactatgtaaaatatcttattattattattacctcatatatgccttctcatttaatcttctta----------gccactgtttgaaataggttctcttcctattct-acagatgtggaaa
i dasNov3.JH569975          I 5 C 0
e micMur3.chr3                 925791 572 - 119751181 I
e proCoq1.NW_012149419v1       649806 396 -   2566024 I
e cebCap1.NW_016107979v1       297737  19 -   1024465 I
e saiBol1.JH378276             512522   0 -   3282555 C

a score=743603.000000
s hg38.chr15_KI270850v1_alt    195205 118 +    430880 acttttcatatttta--tagatatgaaatga-------gttcaggtttacatagctaggaggtaataTTTTTATAAACTTGATTTTTTT--CC-C--CCTTCAA-----AGTCTAGTGCAGTCTTTAAAACCTCTAG
s panTro5.chr15              18004875 115 -  83230942 ac---tcatatttta--tagatatgaaatga-------gttcaggattatatagctaggaggtaatatttttataaacttgattttttt--tc-c--ccttcaa-----agtctagtgcagtctttAAAAGCTTTAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231176 115 -  99763055 ac---tcatatttta--tagatatgaaatga-------gttcaggattatatagctaggaggcaatatttttataaacttgattttttt--tc-c--ccttcaa-----agtctagtgcagtctttAAAAGCTTTAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       293810 117 +    378907 acttttcatatttta--tagatatgaaatga-------gttcaggattacatagctaggaggtaataTTTTTATAAACTTGATTTTTTT---C-C--CCTTCAA-----AGTCTAGTGCAGTCTTTAAAACCTTTAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149367 118 + 121039945 acttctcatatttta--tagatatgaaatga-------gttcagggttacatagctaggaggtaataTTTTTATAAACTTGATTTTTTT--TC-C--CCTTAAA-----AGTCTAGTGCAGTCTTTAAAACCTTTAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360310 122 + 169600520 acttctcatatttta--tagatatgaaatga-------gttcatgattacatagctaagaagtaataTCTTCATAAACTAGATTTTTTT--CT----CCTTCAAAGTATAGTATAGTGCAATCATTAAAATCTTTAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107347145 118 - 171882078 gcttctcatatttta--tagatatgaaatga-------gttcatggttacatagctaagaagtagtaTTTTTATAAACTTGATTTTTTT--TC-T--CCTTCAA-----AGTCTAGTACAGTCTTTAAAACCTTTGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356424 117 -   6271500 acttctcatatttta--tagatatgaaataa-------gttcatggttacataactaggaagtaataTTTTTATCAACTTGATTTTTTT--GC----CCTTCGA-----AGTCTAGTGCAGTCTTTAAAACCTTTAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816026 122 -   1987038 acttctcatatttta--tagatatgaaatga-------gttcatgattacatagctaagaagtaataTCTTCATAAACTAGATTTTTTT--CT----CCTTCAAAGCATAGTATAGTGCAATCATTAAAATCTTTAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21066806 118 -  24206276 gcttctcatatttta--tagatatgaaatga-------gttcatggttacatagctaagaagtaataTTTTTATAAACTTGATTTTTTT--TC-T--CCTTCAA-----AGTCTAGTACAGTCTTTAAAACCTTTGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       303251 118 -   1458659 acttctcatatttta--tagatatgaaatga-------gttcatggttacatagctaagaagtaataTTTTTATAAACTTGATTTTTTT--TC-T--CCTTCAA-----AGCCTAGTACAGTCTTTAAAACCTTTGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7475815 118 -   9444221 acttctcatattttg--tagatatgaaatga-------gctgatgatcacatagctaggaagtaataTCTTTGTAAACTTAACTTTTTT--TC-T--TTTTCAA-----AGTATAGTGCAGTCTTTAAAACCTTTAG
i colAng1.NW_012112253v1    C 0 C 0
s aotNan1.NW_018511953v1       743297  90 -   3745603 GCTTCTCATATTTTG--TAGATATAAAATGA-------GT---------------TAGGA---------------AACTTGATTTTTTTTTTC-T--CCTTCAA-----AGTATAGCACAATCTTGAAAATCTTTAA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6766813 105 -  36342412 -------------ta--aggatttaaactg--------gttcaaggtcacatagctagaaagtaacaTCTTTGT-AACTTGATTTTTTT--TC-CTATCCTCAA-----AGTATAGGGCAGCTGTTAAGGTCTTTAA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 52645 116 -  40214260 ----ctagggtttaaaccagttaagtaatgt-------attcaaggtcacaaaggta-gaagtaaaagCTTTGTGAATCTGATTGCCAC--CCAT--CTCCCAA-----AGTATAGTGTGGACATTAACATTTTAAA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              45859 107 -   2180720 -----------------caggttcaaactgattcatgtgtccaaggtcacatagctaggaagCAATATCTTTGTAAACCTGATTGTTTT--TC-T-----TTAA-----AATATAATGTAGCCTTTAAAATTTTTAA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 925791 572 - 119751181 I
e proCoq1.NW_012149419v1       649806 396 -   2566024 I
e mm10.chr9                  55182212 620 + 124595110 I
e cebCap1.NW_016107979v1       297737  19 -   1024465 I
e saiBol1.JH378276             512522   0 -   3282555 C

a score=152791.000000
s hg38.chr15_KI270850v1_alt    195323 20 +    430880 ----------------------TTTC----------------ACATGACC-AAAAAGTA
s panTro5.chr15              18004990 20 -  83230942 ----------------------TTTC----------------ACATGACC-AAAAAGTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231291 20 -  99763055 ----------------------TTTC----------------ACATGACC-AAAAAGTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       293927 20 +    378907 ----------------------TTTC----------------ACATGACC-AAAAAGTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149485 20 + 121039945 ----------------------TTTC----------------ACATGACC-AAAAAGTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360432 20 + 169600520 ----------------------TTTC----------------ACATGACC-AAAAAGTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107347263 20 - 171882078 ----------------------TTTC----------------ACATGACC-AAAAAGTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356541 20 -   6271500 ----------------------TTTC----------------ACATGACC-AAAAAGTA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816148 20 -   1987038 ----------------------TTTC----------------ACATGACC-AAAAAGTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21066924 20 -  24206276 ----------------------TTTC----------------ACATGACC-AAAAAGTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       303369 20 -   1458659 ----------------------TTTC----------------ACATGACC-AAAAAGTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7475933 20 -   9444221 ----------------------TTTC----------------ACATGACC-AAAAAGGA
i colAng1.NW_012112253v1    C 0 C 0
s aotNan1.NW_018511953v1       743387 21 -   3745603 ----------------------TTTC----------------ACATGACCAAAAAAATA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 926363 20 - 119751181 ----------------------TTTC----------------ACACAATC-AAAAAATA
i micMur3.chr3              I 572 C 0
s otoGar3.GL873530            6766918 36 -  36342412 ----------------------TTTCATGTAATCAGAATTAAACACAATC-AAAAACTA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 52761 10 -  40214260 ----------------------TTTT----------------ACATGA-----------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              45966 42 -   2180720 TTTTACTAAGTGCAGAGTTTTTTTTT----------------TTTTAATC-AAAAAGCA
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       649806 396 -   2566024 I
e mm10.chr9                  55182212 620 + 124595110 I
e cebCap1.NW_016107979v1       297737 19 -   1024465 I
e saiBol1.JH378276             512522  0 -   3282555 C

a score=42454.000000
s hg38.chr15_KI270850v1_alt    195343 4 +    430880 GTTC-
s panTro5.chr15              18005010 4 -  83230942 GTTC-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231311 4 -  99763055 GTTC-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       293947 4 +    378907 ATTC-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149505 4 + 121039945 GTTC-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360452 4 + 169600520 GTTC-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107347283 4 - 171882078 GTTC-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356561 4 -   6271500 GTTC-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816168 4 -   1987038 GTTC-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21066944 4 -  24206276 GTTC-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       303389 4 -   1458659 GTTC-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7475953 4 -   9444221 GTTC-
i colAng1.NW_012112253v1    C 0 C 0
s aotNan1.NW_018511953v1       743408 4 -   3745603 GTTC-
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 926383 4 - 119751181 GTTC-
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       650202 4 -   2566024 GTTC-
i proCoq1.NW_012149419v1    I 396 C 0
s otoGar3.GL873530            6766954 4 -  36342412 GTTC-
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 52771 2 -  40214260 --TC-
i canFam3.chr30             C 0 I 240
s dasNov3.JH569975              46008 4 -   2180720 -TTCT
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55182212 620 + 124595110 I
e cebCap1.NW_016107979v1       297737 19 -   1024465 I
e saiBol1.JH378276             512522 0 -   3282555 C

a score=518784.000000
s hg38.chr15_KI270850v1_alt    195347 64 +    430880 -----------------------CATTTCTGTTTAGTCTTAGGATAAGATATGGATGTGTTTTCATCTTTAGAGAAGTCCCTGCACT
s panTro5.chr15              18005014 64 -  83230942 -----------------------CATTTTTATTTAGTCTTAGGATAAGATATCGATGTGTTTTCATCTTTAGAGAAGTCCCTGCACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231315 64 -  99763055 -----------------------CATTTTTATTTAGTCTTAGGATAAGATATCGATGTGTTTTCATCTTTAGAGAAGTCCCTGCACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       293951 64 +    378907 -----------------------CATTTCTGTTTAGTCTTAGGATAAGATATGGATGTGTTTTCATGTTTAGAGAAGTCCCTGCACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149509 64 + 121039945 -----------------------CATTTCTGTTTAGTCTTAGGATAAGATATCGATGTGTTTTCATCTTTAGAGAAGTCCCTGCACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360456 63 + 169600520 -----------------------CATTTCTATTTAGTGCTAGGATAAGATATCAGCGTGTTTTCATCCTTATAGAAGTCCCTGCAC-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107347287 63 - 171882078 -----------------------CATTTCTATATAGTCTTAGGATATGATATCGATATA-TTTCATCTTTAGAGAAGTCCCTGCACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356565 64 -   6271500 -----------------------CATTTCTATTTAGTCTTAGAATAACATATTGATCTGTTTTCATCATTACAGGAGTCCCTGCACT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816172 63 -   1987038 -----------------------CATTTCTATTTAGTGCTAGGATAAGATATCAACGTGTTTTCATCCTTATAGAAGTCCCTGCAC-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21066948 63 -  24206276 -----------------------CATTTCTATATAGTCTTAGGATATGATATCGATATT-TTTCATCTTTAGAGAAGTCCCTGCACT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       303393 63 -   1458659 -----------------------CATTTCTATATAGTCTTATGATATGATATCGATATT-TTTCATCTTTAGAGAAGTCCCTGCACT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7475957 64 -   9444221 -----------------------CCTTTCTATTTAGTCTTAGGGTAAGATATTGATGTGTTTTCAACTTTGGAGAAGATCCTGCACT
i colAng1.NW_012112253v1    C 0 C 0
s aotNan1.NW_018511953v1       743412 64 -   3745603 -----------------------CATTTATATTTAGTCTTAGGATAAGCTGATGACGTGTTTTCATCTTTAGAGAAGTCTCCTCACT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 926387 64 - 119751181 -----------------------CATTCATGTTCATTCTTGGGGTAAGATACTGGCGCATTTTCATCTTTGAAGAAGTCTCAACACT
i micMur3.chr3              C 0 I 1
s proCoq1.NW_012149419v1       650206 64 -   2566024 -----------------------CATTCATGTTCAGTCTTAGGGTAAGATACTGGCGCATTTTCATCTTTGGAGAAGTCCCAGCACT
i proCoq1.NW_012149419v1    C 0 I 1
s otoGar3.GL873530            6766958 53 -  36342412 -----------------------CATTTATATTCAGT-------TAAA----TGGGTCATTTTCATCTTTAGAAAAGTCCCAGCACT
i otoGar3.GL873530          C 0 I 1
s canFam3.chr30                 53013 64 -  40214260 -----------------------CATTCATATTTAGTCTTAGAATAAGATATTGGTACATTTTCATTTTTAAAGAAATCCCAACATG
i canFam3.chr30             I 240 I 2
s dasNov3.JH569975              46012 81 -   2180720 TATGTTTTTGTCTTATGACAAAGCATTCATTTTCAGCCTTAGAGTA---TATTGGCATCTTTTTATCTT--GAGAGTTCCCAACAC-
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55182212 620 + 124595110 I
e cebCap1.NW_016107979v1       297737 19 -   1024465 I
e saiBol1.JH378276             512522  0 -   3282555 C

a score=571077.000000
s hg38.chr15_KI270850v1_alt    195411 48 +    430880 G-AAAAACTGAAACCAGTTGCATGTAGGCACA--------CGTGGTTCTC-------AGTGTCT
s panTro5.chr15              18005078 48 -  83230942 G-AAAAACTGAAACCACTTGCATGTAGGCACA--------CATGGTTCTC-------AGTGTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231379 48 -  99763055 G-AAAAACTGAAACCACTTGCATGTAGGCACA--------CATGGTTCTC-------AGTGTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294015 48 +    378907 G-AAAAACTGAAACCAGTTGCATGTAGGCACA--------CGTGGTTCTC-------AGTGTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149573 48 + 121039945 G-AAAAACTGAAACCAGTTGCATGTAGGCACA--------CATGGTTCTC-------AATGTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360519 48 + 169600520 G-AAAAACTGAAATGAGTTGCATGTAGGCACA--------CATGGTTCTC-------AGTGTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107347350 48 - 171882078 G-AAAAACTGAAACCTGTTGCATGTAAGCACA--------CATGGTTCCC-------AGTGTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356629 47 -   6271500 G-AAAAACTGAAACCAGTTGCATGTTGGCGCA--------CATGGTTCTC-------AGTGTC-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816235 48 -   1987038 G-AAAAACTGAAATGAGTTGCATGTAGGCACA--------CATGGTTCTC-------AGTGTCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067011 48 -  24206276 G-AAAAACTGAAACCAGTTGCATGTAAGCACA--------CATGGTTCCC-------AGTGTCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       303456 48 -   1458659 G-AAAAACTGAAACCAGTTGCATGTAGGCACA--------CATGGTTCCC-------ACTGTCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476021 48 -   9444221 G-AAAAACTGAAACCAGTTGCATGTAGGCACA--------CATGTTTCTC-------GGTGTCT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             512522 55 -   3282555 G-AAAAACTGAAACCAGTTGCATATGGGGATA--------CATGTTTCTCACTTTAAAGTGTCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       297756 55 -   1024465 G-AAAAACTGAAACTAGTTGCATATAGGGATA--------CATGTTTCTCACTTTAAAGTGTCT
i cebCap1.NW_016107979v1    I 19 C 0
s aotNan1.NW_018511953v1       743476 55 -   3745603 G-AAAAACTGAAACCAGTTGCATATAGGGATA--------CATGTTTCTCACTTTAAAGTGTCT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 926452 48 - 119751181 A-AAAAACTGAAACCAATTGCATGTAGGCAAA--------CATGTTTCTC-------AGTTTCT
i micMur3.chr3              I 1 C 0
s proCoq1.NW_012149419v1       650271 48 -   2566024 G-AAAAACTGAAACCAATTGCATGTAGGCAAA--------AATGTTTCTC-------AGTTTTT
i proCoq1.NW_012149419v1    I 1 C 0
s otoGar3.GL873530            6767012 44 -  36342412 ATAAGAACTGAAGCCAACTGCATGTAGACAGA--------CATATTTCTT-------AG-----
i otoGar3.GL873530          I 1 C 0
s canFam3.chr30                 53079 56 -  40214260 A-AAGAACTGAAACTAGTTGCATACAAGTGCAACTTGCATTATTTTTCTC-------AGTttct
i canFam3.chr30             I 2 I 206
s dasNov3.JH569975              46093 42 -   2180720 -------CTGAAACCAGTTGTATGTGGGCAAA--------CATGTTTCTC-------AAATTCT
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55182212 620 + 124595110 I

a score=539256.000000
s hg38.chr15_KI270850v1_alt    195459 46 +    430880 TAATGT-GTGAACTAGACCATC--------TGTGTAATATTCTTGCTTGTAGTCT
s panTro5.chr15              18005126 46 -  83230942 TCATGT-GTGAACTAGACCATC--------TGTGTAATATTCTTGCTTGTAGTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231427 46 -  99763055 TCATGT-GTGAACTAGACCATC--------TGTGTAATATTCTTGCTTGTAGTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294063 45 +    378907 T-ATGT-GTGAACTAGACCATC--------TGTGTAATATTCTTGCTTGTAGTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149621 46 + 121039945 TCATGT-GTGAACTAGACCATC--------TGTGTAATATTCTTGCTTGTAGTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360567 46 + 169600520 TAATGG-GTGAACTAGACCATC--------TGTGCAATATTCTTGCTTGTAGTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107347398 46 - 171882078 TAATGT-GTGAACTAGACCATC--------TGTGTAATATTCTTGCTTGTCGTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356676 46 -   6271500 TAATGT-GTGAACTAGACCGTC--------TGTGTAATATTCTTACTTGTAGTCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816283 46 -   1987038 TAATGG-GTGAACTAGACCATC--------TGTGCAATATTCTTGCTTGTAGTCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067059 46 -  24206276 TAATGT-GTGAACTAGACCATC--------TGTGTAATATTCTTGCTTGTCGTCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       303504 46 -   1458659 TAATGT-GTGAACTAGACCGTC--------TGTGTAATACTCTTGCTTGTCGTCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476069 46 -   9444221 TCATGT-GTGAACTAGACCATC--------TGTGTAATATTCTTGCTTGTAGTCT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             512577 42 -   3282555 TAATGT-GTGAACTAGA----C--------TGTGTAATAGTCTTGCTTATAGTCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       297811 42 -   1024465 TAATGT-GTGAACTAGA----C--------TGTGTAATAGTCTTGCTTATAGTCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       743531 42 -   3745603 TAATGT-GTGAACTAGA----C--------TGTGTAATAGTCTTGCTTGTAGTCT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 926500 46 - 119751181 TAATAT-GTGAGCTAAACTGTC--------AGTGGAACATTCTTTCTTGTAGTCT
i micMur3.chr3              C 0 I 63
s proCoq1.NW_012149419v1       650319 45 -   2566024 TAATAT--TGAACTAGACTGTC--------AGCGGAACATTCTTGCTTATAGTCT
i proCoq1.NW_012149419v1    C 0 I 63
s otoGar3.GL873530            6767056 43 -  36342412 ---TAT-GTGAACAAGACTGTC--------AGTGAAACATTCTTGCTTATAGTCT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 53341 46 -  40214260 TAATAT-GTAAAGTAGGCATTC--------ATTATTGCATTCTTGCCTATAGTTT
i canFam3.chr30             I 206 C 0
s dasNov3.JH569975              46135 55 -   2180720 TAACAAAGTAAGCTAGATCTTCAGGTATTTAGTATAACATTCTTGCTTGTAATAC
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55182212 620 + 124595110 I

a score=269641.000000
s hg38.chr15_KI270850v1_alt    195505 32 +    430880 TATGAATGGAAGCCTATTTTACTTAATATTGT--
s panTro5.chr15              18005172 32 -  83230942 TATGAATGGAAGCCTATTTTACTTAATATTGT--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231473 32 -  99763055 TATGAATGGAAGCCTATTTTACTTAATATTGT--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294108 32 +    378907 TATGAGTGGAAGCCTATTTTACTTTATATTGT--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149667 32 + 121039945 TATGAATGGAAGCCTATTTTACTTAATATTGT--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360613 32 + 169600520 TATGAATGGAAGTCTATTCTAGTTAATAATTT--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107347444 32 - 171882078 TATGAATGGAAGCCTATTTGAGTTAATAATGT--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356722 30 -   6271500 TTTGAATGGAAGCCTATTTTAGTTAATAA--T--
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816329 32 -   1987038 TATGAATGGAAGTCTATTCTAGTTAATAATTT--
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067105 32 -  24206276 TATGAATGGAAGCCTATTTGAGTTAATAATGT--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       303550 32 -   1458659 TATGAATGGAAGCCTATTTGAGTTAATAATGT--
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476115 32 -   9444221 TATGAATGGAAGTCTCTTTTAGTTAGTAATGT--
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             512619 32 -   3282555 TATGAATGGAAGTGTATTTTAGTTAATAATGT--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       297853 32 -   1024465 TATGAATGGAAGTCTATTTTAGTTAATAATGT--
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       743573 32 -   3745603 TATGAATGGAAGTCTATTTTAGTTAATAATGT--
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6767099 31 -  36342412 TATTAATAGAACTCTATTTTAGTTAACA-TGT--
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 53387 30 -  40214260 GACTAATGAAA--CTGTTTTAGTTGATAGTGT--
i canFam3.chr30             C 0 I 1053
s dasNov3.JH569975              46190 18 -   2180720 ----------------TTTTAGTATTTATGGTGA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 926546 63 - 119751181 I
e proCoq1.NW_012149419v1       650364 63 -   2566024 I
e mm10.chr9                  55182212 620 + 124595110 I

a score=73689.000000
s hg38.chr15_KI270850v1_alt    195537 9 +    430880 --GTCACCTTG
s panTro5.chr15              18005204 9 -  83230942 --GTCACCTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231505 9 -  99763055 --GTCACCTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294140 9 +    378907 --GTCACCTTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149699 9 + 121039945 --GTCACCTTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360645 9 + 169600520 --GTTACCTTG
i rheMac8.chr7              C 0 I 10
s macFas5.chr7              107347476 9 - 171882078 --GTCACCTTG
i macFas5.chr7              C 0 I 10
s macNem1.NW_012011056v1      5356752 9 -   6271500 --GTCACCCTG
i macNem1.NW_012011056v1    C 0 I 10
s cerAty1.NW_012002657v1      1816361 9 -   1987038 --GTTACCTTG
i cerAty1.NW_012002657v1    C 0 I 10
s chlSab2.chr29              21067137 9 -  24206276 --GTCACCTTG
i chlSab2.chr29             C 0 I 10
s manLeu1.NW_012105520v1       303582 9 -   1458659 --GTCACCTTG
i manLeu1.NW_012105520v1    C 0 I 10
s colAng1.NW_012112253v1      7476147 9 -   9444221 --GTCACCTTG
i colAng1.NW_012112253v1    C 0 I 10
s saiBol1.JH378276             512651 9 -   3282555 --GTCACTTTG
i saiBol1.JH378276          C 0 I 8
s cebCap1.NW_016107979v1       297885 9 -   1024465 --GTCACCTTG
i cebCap1.NW_016107979v1    C 0 I 10
s aotNan1.NW_018511953v1       743605 9 -   3745603 --GTCACCTTG
i aotNan1.NW_018511953v1    C 0 I 10
s otoGar3.GL873530            6767130 4 -  36342412 --GG-----TG
i otoGar3.GL873530          C 0 I 10
s dasNov3.JH569975              46208 9 -   2180720 GGGTCTTCT--
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 926546 63 - 119751181 I
e proCoq1.NW_012149419v1       650364 63 -   2566024 I
e mm10.chr9                  55182212 620 + 124595110 I
e canFam3.chr30                 53417 1053 -  40214260 I

a score=165406.000000
s hg38.chr15_KI270850v1_alt    195546 18 +    430880 AG--TATTTT-CAAAAATTGC
s panTro5.chr15              18005213 18 -  83230942 AG--TATTTT-CAAATATTGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231514 18 -  99763055 AG--TATTTT-CAAATATTGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294149 18 +    378907 AG--TATTTT-CAAAAATTGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149708 18 + 121039945 AG--TATTTT-CAAAAATTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360664 18 + 169600520 AG--TATTTT-CAAAAATCGC
i rheMac8.chr7              I 10 C 0
s macFas5.chr7              107347495 18 - 171882078 AG--TATTTT-CAAATATTAC
i macFas5.chr7              I 10 C 0
s macNem1.NW_012011056v1      5356771 18 -   6271500 AG--TATTTT-CAAAAATTGC
i macNem1.NW_012011056v1    I 10 C 0
s cerAty1.NW_012002657v1      1816380 18 -   1987038 AG--TATTTT-CAAAAATCGC
i cerAty1.NW_012002657v1    I 10 C 0
s chlSab2.chr29              21067156 18 -  24206276 AG--TATTTT-CAAAAATTGC
i chlSab2.chr29             I 10 C 0
s manLeu1.NW_012105520v1       303601 18 -   1458659 AG--TATTTT-CAAAAATTGC
i manLeu1.NW_012105520v1    I 10 C 0
s colAng1.NW_012112253v1      7476166 18 -   9444221 AG--TATTTT-CAGAAATCGC
i colAng1.NW_012112253v1    I 10 C 0
s saiBol1.JH378276             512668  7 -   3282555 --------------AAGTTGC
i saiBol1.JH378276          I 8 C 0
s cebCap1.NW_016107979v1       297904 18 -   1024465 AG--TATTTT-CAGAAGTTGC
i cebCap1.NW_016107979v1    I 10 C 0
s aotNan1.NW_018511953v1       743624 18 -   3745603 AG--TATTTT-CAGAAGTTGC
i aotNan1.NW_018511953v1    I 10 C 0
s otoGar3.GL873530            6767144 20 -  36342412 AGTATATTTT-CAAAAATTGA
i otoGar3.GL873530          I 10 C 0
s mm10.chr9                  55182832 18 + 124595110 AG--CATTTT-TAGAAGTTGT
i mm10.chr9                 I 620 C 0
s canFam3.chr30                 54470 18 -  40214260 AA--TATTTT-AAAAAATCAG
i canFam3.chr30             I 1053 C 0
s dasNov3.JH569975              46217 19 -   2180720 AA--CACTTTAAAAAAATTGA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 926546 63 - 119751181 I
e proCoq1.NW_012149419v1       650364 63 -   2566024 I

a score=1851602.000000
s hg38.chr15_KI270850v1_alt    195564 147 +    430880 TGGGGTTTGGAATAGACTC-------ATACTGAATTCTATGC--------TATC-GTGGAGTCCATGGTTATCTGAACA-TGTTGGCTAGA---------G-TTTTT----------TAGGTGATAAGAAAAAGGAAATGAACCAGACTTGTGTCTAGTTTTATA-TTCTCTTGAAACTTCATAA
s panTro5.chr15              18005231 147 -  83230942 TGGGGTTTGAAATAGACTC-------ATACTGAATTCTATGC--------TATC-GTGGAGTCCATGGTGGTATGAACA-TGTTGGCTAGA---------G-TTTTT----------TAGGTGATAGGAAAATGGAAATGAACCAGACTTGTGTCTAGTTTTATA-TTCCCTTGAAACTTCATAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231532 147 -  99763055 TGGGGTTTGAAATAGACTC-------ATACTGAATTCTATGC--------TATC-GTGGAGTCCATGGTGGTATGAACA-TGTTGGCTAGA---------G-TTTTT----------TAGGTGATAGGAAAATGGAAATGAACCAGACTTGTGTCTAGTTTTATA-TTCCCTTGAAACTTCATAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294167 147 +    378907 TGGGGTTTGGAATAGACTC-------ATACTGAATTCTATGC--------TATC-GTGGAGTCCATGGTGATCTGAACA-TGTTGGCTAGA---------G-TTTTT----------TAGGTGATAAGAAAAAGGAAATGAACCAGACTTGTGTCTAGTTTTATA-TTCTCTTGAAACGTCATAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149726 147 + 121039945 TGGGGTTTGGAATAGACTC-------ATACTGAATTCTATGC--------TATG-GTGGAGTCCGTGGTGATCTGAACA-TGTTGGCTAGA---------G-TTTTT----------TAGGTGATAAGAAAAAGGAAATGAGGCAGACTTGTGTCTAGTTCTATA-TTCTCATGAAACTTCATAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360682 147 + 169600520 TGGGGTTTGGAATAGACTC-------ATACTGAATTCTATGC--------TATC-GTGGAGTCCATGGTGGTCTGAACA-TGTTGGCTAGA---------G-TTTTT----------CAGATGACAAAAAATAGGAAATGAACCAGACTTTTGTCTAGTTTTATA-TTCTCTTGAGACTTCATAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107347513 147 - 171882078 TCAGGTTTGGAATAGACTC-------ATACTGAATTATATGC--------TATC-GTGGAGTCCATGGTGGTCTGAACA-TGTTGGCTAGA---------G-TTTTT----------CAGGTGATAAGAAAAAGGAAATGGACCAGATTTGTGTCTAGTTTTATA-TTATCTTCAAACTTCATAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356789 137 -   6271500 TGGGGTTTGGAATAGACTC-------ATACTGAATTCTAGGC--------TATC-ATGGAGTCCATGGTGGTATGAACG-TGTT------------------CCTTT----------TAGGTGATAAGAAAAAGGAAATGAACC--ACTTGTGTCTAGTTTTATA-TTCTCTTGAAACTTCATAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816398 146 -   1987038 TGGGGTTTGGAATAGACTC-------ATACTGAATTCTATGC--------TATC-GTGGAGTCCATGGTGGTCTGAACA-TGTTGGCTAGA---------G-TTTTT----------CAGATGATAA-AAATAGGAAATGAACCAGACTTTTGTCTAGTTTTATA-TTCTCTTGAGACTTCATAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067174 147 -  24206276 TCGAGTTTGGAATAGACTC-------ATACTGAATTCTATGC--------TTCT-GTAGAGTCCATGGTGGTCTGAACA-TGTTGGCTAGA---------G-TTTTT----------CAGGTGATAAGAAAAAGGAAATGGACCAGACTTGTGTCTAGTTTCATA-TTCTCTTCAAACTTCATAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       303619 147 -   1458659 TCGGGTTTGGAATAGACTC-------ATACTGAATTCTATGC--------TTCT-GTAGAGTCCATGGTGGTCTGAACA-TGTTGGCTAGA---------G-TTTTT----------CAGGTGATAAGAAAAAGGAAATGGACCAGACTTGTGTCTAGTTTTATA-TTCTCTTTGAACTTCATAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476184 147 -   9444221 TGGGGTTTGGAATTGACTC-------ATACTGAATTCTGTGC--------TATC-ATGGAGTCCATGGTGGTCTGAACA-TGTTGGCTAGA---------G-TTTTT----------CAGAGGATAAGAAATAGGAAATGAACCAGACTTGTGTCTAATTTTATA-TTCTCTTGAAACTTCATAA
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             512675 148 -   3282555 TGGGGTTTGGAATAGACTC-------ATACCGAACTCTGTGC--------TATT-GTGGAGTCCATGGTGGTCTGGACATTGTTGACTAGA---------C-TTTTT----------CACATGATAAGACATAGGAAATGAACCAGACTTGTGCCTAGTTTTGTA-TCCTCTTGAAACTTCATAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       297922 147 -   1024465 TGGGGTTTGGAATAGAGTC-------ATACTGAATTCTGTGC--------TATT-GTGGGGTCCATGGTGGTCTGGACA-TGTTGACTAGA---------C-TTTTT----------CAAATGATACGAAATAGGAAATGAACCTGACTTGTGCCTAGTTTTGTA-TCCTCTTGAAACTTCATAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       743642 147 -   3745603 TGGGGTTTGGAATAGACTC-------ATACCGAATTCTGTGC--------TATT-GTGGAGTCCATGGTAGTCTGGACA-TGTTGACTAGA---------C-TGTTT----------CATATGATAAGAAATAGGAAATGAACCAGACCTGTGCCTAGTTTTGTA-TCCTCTTGAAACTTCATAA
i aotNan1.NW_018511953v1    C 0 I 13
s micMur3.chr3                 926609 156 - 119751181 TGGAGTTTGGAATAGAGTC-------ATACTGAATTCTATGC--------CATTGGCAGAGTCCATGGTGATCTGCACA-TGTTGGCTAGA---------C-TTTTTTTTTTCCTTCTAGATAAT---AAATAGTAAATGAACCAGACTTGTCCCCAGTTTTATATTTCTCTTGAAACTTCTTAA
i micMur3.chr3              I 63 C 0
s proCoq1.NW_012149419v1       650427 159 -   2566024 TGGGATTTGGAATAGAGTC-------ATACTGAATTCTGTGC--------TGTTGGCAGAGTCCATGGTGGTCTGGACA-TGTTGGCTAGA---------CTTTTTTTTTTTCCTTCCGGATGATAAGAAATAGTAAATGAACCAGACTTGT-CCCAGTTTTATATTTCTCTTGAAACTTCATAA
i proCoq1.NW_012149419v1    I 63 C 0
s otoGar3.GL873530            6767164 164 -  36342412 TGGGGTTTGAAAT--AGTC-------TAACTGAATTCCATGCAGAATAGGTGTT-GCAGAGTCCATGGTGATCTGGACA-TGTTGGCTAGA---------T-TTTTTTTTTTCCTCCCAGATGCTAAGAAATAGTAAATGAACCAGACTTATCCCCAGGTTAATATTTCTCTTAAAACTTCATAA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55182850 134 + 124595110 ---AGTTTGGAATAGACTC-------ATACTGAACTCTAAAC--------TGTC---AGAGTCCATGGTGTTCTGGGCA-TACT-ATGAGG---------C-CTCCC----------CTCAGGATA--------GAAACAAGCAACACATGTCTTCAGTTTTCTGTTTTTCTTAACATTTCATAG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 54488 156 -  40214260 TGGAGTTTGAAATAGGTTA-------ATACTAAGTTCTAGGC--------TATT-GCAGGAGCCATGGTGATCTAGACT-TG-TGGTTAGACATTTTTTTG-TTTTT----------CAGATGTTAACAAAGAGCAAATGAGCCAGACTTGTCCCCCATTTTATATTCCTATTTAAACTTCATAA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              46236 152 -   2180720 TGGGGTTTGGAACAGACCCATATTGAATACTGAATTCTGGGC--------TGTT-GTAAGTTCTCTGGTGGCGTGGGCC-TGTTGACTAGATTTCCTTTTG-TTTTT----------TAGATGATAAGAAATAG------------ACTTGTCCCCAGTTTTATTTTCCTGTTGAAACTTCATAA
i dasNov3.JH569975          C 0 C 0

a score=141105.000000
s hg38.chr15_KI270850v1_alt    195711 13 +    430880 CGCTTCATTTAAT
s panTro5.chr15              18005378 13 -  83230942 TGCTTCATTTAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231679 13 -  99763055 TGCTTCATTTAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294314 13 +    378907 CGCTTCATTTAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149873 13 + 121039945 TGCTTCGTTTAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360829 13 + 169600520 TGCTTCATTTAAT
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              107347660 13 - 171882078 TGCTTCATTTAAT
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011056v1      5356926  3 -   6271500 TGC----------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816544 13 -   1987038 TGCTTCATTTAAT
i cerAty1.NW_012002657v1    C 0 I 1
s chlSab2.chr29              21067321 13 -  24206276 TGCTTCATTTAAT
i chlSab2.chr29             C 0 I 299
s manLeu1.NW_012105520v1       303766 13 -   1458659 TGCTTCATTTAAT
i manLeu1.NW_012105520v1    C 0 I 299
s colAng1.NW_012112253v1      7476331 13 -   9444221 TGCTTCATTTAAT
i colAng1.NW_012112253v1    C 0 I 1
s saiBol1.JH378276             512823 13 -   3282555 TGCTTCATTTAAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       298069 13 -   1024465 CGCTTCATTTAAT
i cebCap1.NW_016107979v1    C 0 C 0
s micMur3.chr3                 926765 13 - 119751181 TCCTTCATTTAAT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       650586 13 -   2566024 TCCTTCATTTAGT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6767328 13 -  36342412 TCCTCCATTTAAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55182984  9 + 124595110 ----TCCTTTAAT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 54644 12 -  40214260 -TCGTCAATTAAA
i canFam3.chr30             C 0 I 1
s dasNov3.JH569975              46388 13 -   2180720 TCCTTCCTTTAAT
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       743789 13 -   3745603 I

a score=10658.000000
s hg38.chr15_KI270850v1_alt    195724 2 +    430880 TG
s panTro5.chr15              18005391 2 -  83230942 TG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231692 2 -  99763055 TG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294327 2 +    378907 TG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149886 2 + 121039945 TG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360843 1 + 169600520 -G
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              107347674 1 - 171882078 -G
i macFas5.chr7              I 1 C 0
s cerAty1.NW_012002657v1      1816558 1 -   1987038 -G
i cerAty1.NW_012002657v1    I 1 C 0
s colAng1.NW_012112253v1      7476345 1 -   9444221 -G
i colAng1.NW_012112253v1    I 1 C 0
s saiBol1.JH378276             512836 2 -   3282555 TG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       298082 2 -   1024465 TG
i cebCap1.NW_016107979v1    C 0 I 42
s micMur3.chr3                 926778 2 - 119751181 TG
i micMur3.chr3              C 0 I 5
s proCoq1.NW_012149419v1       650599 2 -   2566024 TG
i proCoq1.NW_012149419v1    C 0 I 10
s otoGar3.GL873530            6767341 2 -  36342412 TG
i otoGar3.GL873530          C 0 I 5
s mm10.chr9                  55182993 2 + 124595110 TG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 54657 1 -  40214260 T-
i canFam3.chr30             I 1 I 5
s dasNov3.JH569975              46401 2 -   2180720 TG
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       743789 13 -   3745603 I
e manLeu1.NW_012105520v1       303779 299 -   1458659 I
e chlSab2.chr29              21067334 299 -  24206276 I
e macNem1.NW_012011056v1      5356929 0 -   6271500 C

a score=-18873.000000
s hg38.chr15_KI270850v1_alt    195726 17 +    430880 -----TCttttttttttttttt
s panTro5.chr15              18005393  7 -  83230942 -----GA----------CTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231694  7 -  99763055 -----GA----------CTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294329 13 +    378907 -----TC----ttttttttttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149888  7 + 121039945 -----GA----------TTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360844  5 + 169600520 -----GA----------CTG--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107347675  7 - 171882078 -----GA----------Ctttt
i macFas5.chr7              C 0 I 290
s cerAty1.NW_012002657v1      1816559  5 -   1987038 -----GA----------CTG--
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7476346  7 -   9444221 -----GA----------CTTTT
i colAng1.NW_012112253v1    C 0 I 5
s saiBol1.JH378276             512838  7 -   3282555 -----GA----------CTCGT
i saiBol1.JH378276          C 0 I 2
s micMur3.chr3                 926785  7 - 119751181 -----AA----------CTTTT
i micMur3.chr3              I 5 I 3
s otoGar3.GL873530            6767348  7 -  36342412 -----AA----------CTTTT
i otoGar3.GL873530          I 5 I 3
s mm10.chr9                  55182995  2 + 124595110 -----CA---------------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 54663  7 -  40214260 -----GA----------TTTTT
i canFam3.chr30             I 5 I 4
s dasNov3.JH569975              46403  8 -   2180720 AATGTAA----------C----
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       650601 10 -   2566024 I
e aotNan1.NW_018511953v1       743789 13 -   3745603 I
e cebCap1.NW_016107979v1       298084 42 -   1024465 I
e manLeu1.NW_012105520v1       303779 299 -   1458659 I
e chlSab2.chr29              21067334 299 -  24206276 I
e macNem1.NW_012011056v1      5356929  0 -   6271500 C

a score=10670.000000
s hg38.chr15_KI270850v1_alt    195743 2 +    430880 tt
s panTro5.chr15              18005400 2 -  83230942 TT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231701 2 -  99763055 TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294342 2 +    378907 tt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149895 2 + 121039945 TT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360849 2 + 169600520 TT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107347972 2 - 171882078 TT
i macFas5.chr7              I 290 C 0
s cerAty1.NW_012002657v1      1816564 2 -   1987038 TT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067633 2 -  24206276 TT
i chlSab2.chr29             I 299 C 0
s manLeu1.NW_012105520v1       304078 2 -   1458659 TT
i manLeu1.NW_012105520v1    I 299 C 0
s mm10.chr9                  55182997 2 + 124595110 CT
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              46411 2 -   2180720 TT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 926792 3 - 119751181 I
e proCoq1.NW_012149419v1       650601 10 -   2566024 I
e aotNan1.NW_018511953v1       743789 13 -   3745603 I
e canFam3.chr30                 54670 4 -  40214260 I
e cebCap1.NW_016107979v1       298084 42 -   1024465 I
e otoGar3.GL873530            6767355 3 -  36342412 I
e colAng1.NW_012112253v1      7476353 5 -   9444221 I
e macNem1.NW_012011056v1      5356929 0 -   6271500 C
e saiBol1.JH378276             512845 2 -   3282555 I

a score=17199.000000
s hg38.chr15_KI270850v1_alt    195745 7 +    430880 tttttAC
s panTro5.chr15              18005402 7 -  83230942 CTTTTAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231703 7 -  99763055 CTTTTAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294344 7 +    378907 tttttAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149897 3 + 121039945 TTT----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360851 7 + 169600520 TTTTTAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107347974 7 - 171882078 TTTTTAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356929 4 -   6271500 ---TCAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816566 7 -   1987038 TTTTTAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067635 7 -  24206276 TTTTTAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304080 7 -   1458659 TTTTTAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476358 1 -   9444221 ------C
i colAng1.NW_012112253v1    I 5 C 0
s micMur3.chr3                 926795 2 - 119751181 -----AC
i micMur3.chr3              I 3 C 0
s proCoq1.NW_012149419v1       650611 7 -   2566024 TTTTGAC
i proCoq1.NW_012149419v1    I 10 C 0
s otoGar3.GL873530            6767358 2 -  36342412 -----AC
i otoGar3.GL873530          I 3 C 0
s mm10.chr9                  55182999 7 + 124595110 TCTTGAT
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              46413 7 -   2180720 TTCTGAT
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       743789 13 -   3745603 I
e canFam3.chr30                 54670 4 -  40214260 I
e cebCap1.NW_016107979v1       298084 42 -   1024465 I
e saiBol1.JH378276             512845 2 -   3282555 I

a score=265081.000000
s hg38.chr15_KI270850v1_alt    195752 22 +    430880 TTCTTAAATTGTTGAGTGGTGA
s panTro5.chr15              18005409 22 -  83230942 TTCTTAAATTGTTGAGTGATGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231710 22 -  99763055 TTCTTAAATTGTTGAGTGATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294351 22 +    378907 TTCTTAAATTGTTGAGTGGTGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149900 22 + 121039945 TTCTTAAATTGTTGAGTGGTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360858 22 + 169600520 TTCTTAAAATGTTGAGTGGTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107347981 22 - 171882078 TTCTGAAATTGTTAAGTGATGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356933 22 -   6271500 TTCTTAGATTGTTGAGTAGTGA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816573 22 -   1987038 TTCTTAAAATGTTGAGTGGTAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067642 22 -  24206276 TTCTGAAATTGTTAAGTGATGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304087 22 -   1458659 TTCTGAAATTGTTAAGTGATGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476359 22 -   9444221 TTCTTAAAATGTTGAGTGGTGG
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             512847 22 -   3282555 TTCTTAAAATGTTGAGTGGTGA
i saiBol1.JH378276          I 2 C 0
s aotNan1.NW_018511953v1       743802 22 -   3745603 TTCTTAAAATGTTGAGTGGTGA
i aotNan1.NW_018511953v1    I 13 C 0
s micMur3.chr3                 926797 22 - 119751181 TCCTTAAAATGTTGAGTGGTGA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       650618 22 -   2566024 TTCTTAAAATGTTGAGTGGTGA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6767360 22 -  36342412 TTCATAAAATGTTGAGTAGTGg
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55183006 20 + 124595110 TTCTTAA--TACTGAGTGGTAG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 54674 16 -  40214260 ------AAATGTCTAATTGTGA
i canFam3.chr30             I 4 C 0
s dasNov3.JH569975              46420 22 -   2180720 TTCTAAAAATCTTGAGTGTTAA
i dasNov3.JH569975          C 0 C 0
e cebCap1.NW_016107979v1       298084 42 -   1024465 I

a score=31113.000000
s hg38.chr15_KI270850v1_alt    195774 5 +    430880 TCCAT
s panTro5.chr15              18005431 5 -  83230942 TCCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231732 5 -  99763055 TCCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294373 5 +    378907 TCCAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149922 5 + 121039945 TCCAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360880 5 + 169600520 TCCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348003 5 - 171882078 TCTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356955 5 -   6271500 TCAAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816595 5 -   1987038 TCCAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067664 5 -  24206276 TCTAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304109 5 -   1458659 TCTAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476381 5 -   9444221 TCAAT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             512869 5 -   3282555 TCCAT
i saiBol1.JH378276          C 0 I 1
s aotNan1.NW_018511953v1       743824 5 -   3745603 TCCAT
i aotNan1.NW_018511953v1    C 0 I 3
s micMur3.chr3                 926819 5 - 119751181 TCCAT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       650640 5 -   2566024 TCCAT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6767382 5 -  36342412 gccgg
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55183026 4 + 124595110 TCAT-
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 54690 5 -  40214260 TCTGT
i canFam3.chr30             C 0 C 0
e dasNov3.JH569975              46442 0 -   2180720 C
e cebCap1.NW_016107979v1       298084 42 -   1024465 I

a score=23920.000000
s hg38.chr15_KI270850v1_alt    195779 3 +    430880 TTT
s panTro5.chr15              18005436 3 -  83230942 TTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231737 3 -  99763055 TTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294378 3 +    378907 TTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149927 3 + 121039945 TTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360885 3 + 169600520 TTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348008 3 - 171882078 TTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356960 3 -   6271500 TTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816600 3 -   1987038 TTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067669 3 -  24206276 TTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304114 3 -   1458659 TTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476386 3 -   9444221 TTT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             512875 2 -   3282555 TT-
i saiBol1.JH378276          I 1 C 0
s micMur3.chr3                 926824 3 - 119751181 TTT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       650645 3 -   2566024 TTT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6767387 3 -  36342412 atg
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55183030 3 + 124595110 TTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 54695 3 -  40214260 TCT
i canFam3.chr30             C 0 C 0
e aotNan1.NW_018511953v1       743829 3 -   3745603 I
e dasNov3.JH569975              46442 0 -   2180720 C
e cebCap1.NW_016107979v1       298084 42 -   1024465 I

a score=10920.000000
s hg38.chr15_KI270850v1_alt    195782 1 +    430880 T
s panTro5.chr15              18005439 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231740 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294381 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149930 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360888 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348011 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356963 1 -   6271500 T
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816603 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067672 1 -  24206276 T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304117 1 -   1458659 T
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476389 1 -   9444221 T
i colAng1.NW_012112253v1    C 0 C 0
s proCoq1.NW_012149419v1       650648 1 -   2566024 T
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6767390 1 -  36342412 t
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55183033 1 + 124595110 T
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 54698 1 -  40214260 T
i canFam3.chr30             C 0 I 8
e micMur3.chr3                 926827 0 - 119751181 C
e aotNan1.NW_018511953v1       743829 3 -   3745603 I
e dasNov3.JH569975              46442 0 -   2180720 C
e cebCap1.NW_016107979v1       298084 42 -   1024465 I
e saiBol1.JH378276             512877 0 -   3282555 C

a score=5190.000000
s hg38.chr15_KI270850v1_alt    195783 1 +    430880 A
s panTro5.chr15              18005440 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231741 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294382 1 +    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149931 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360889 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348012 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356964 1 -   6271500 A
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816604 1 -   1987038 A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067673 1 -  24206276 A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304118 1 -   1458659 A
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476390 1 -   9444221 A
i colAng1.NW_012112253v1    C 0 C 0
s proCoq1.NW_012149419v1       650649 1 -   2566024 A
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6767391 1 -  36342412 g
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55183034 1 + 124595110 A
i mm10.chr9                 C 0 I 4
e micMur3.chr3                 926827 0 - 119751181 C
e aotNan1.NW_018511953v1       743829 3 -   3745603 I
e dasNov3.JH569975              46442 0 -   2180720 C
e canFam3.chr30                 54699 8 -  40214260 I
e cebCap1.NW_016107979v1       298084 42 -   1024465 I
e saiBol1.JH378276             512877 0 -   3282555 C

a score=28359.000000
s hg38.chr15_KI270850v1_alt    195784 4 +    430880 TTGT
s panTro5.chr15              18005441 4 -  83230942 TTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231742 4 -  99763055 TTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294383 4 +    378907 TTGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149932 4 + 121039945 TTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360890 4 + 169600520 TTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348013 4 - 171882078 TTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356965 4 -   6271500 TTGT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816605 4 -   1987038 TTGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067674 4 -  24206276 TTGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304119 4 -   1458659 TTGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476391 4 -   9444221 TTGT
i colAng1.NW_012112253v1    C 0 C 0
s proCoq1.NW_012149419v1       650650 4 -   2566024 CTGT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6767392 4 -  36342412 ctgg
i otoGar3.GL873530          C 0 I 56
e micMur3.chr3                 926827 0 - 119751181 C
e aotNan1.NW_018511953v1       743829 3 -   3745603 I
e mm10.chr9                  55183035 4 + 124595110 I
e dasNov3.JH569975              46442 0 -   2180720 C
e canFam3.chr30                 54699 8 -  40214260 I
e cebCap1.NW_016107979v1       298084 42 -   1024465 I
e saiBol1.JH378276             512877 0 -   3282555 C

a score=14196.000000
s hg38.chr15_KI270850v1_alt    195788 2 +    430880 AA
s panTro5.chr15              18005445 2 -  83230942 AA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231746 2 -  99763055 AA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294387 2 +    378907 AA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149936 2 + 121039945 AA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360894 2 + 169600520 AA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348017 2 - 171882078 AA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356969 2 -   6271500 AA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816609 2 -   1987038 AA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067678 2 -  24206276 AA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304123 2 -   1458659 AA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476395 2 -   9444221 AA
i colAng1.NW_012112253v1    C 0 C 0
s proCoq1.NW_012149419v1       650654 2 -   2566024 AA
i proCoq1.NW_012149419v1    C 0 I 13
e micMur3.chr3                 926827 0 - 119751181 C
e aotNan1.NW_018511953v1       743829 3 -   3745603 I
e mm10.chr9                  55183035 4 + 124595110 I
e dasNov3.JH569975              46442 0 -   2180720 C
e canFam3.chr30                 54699 8 -  40214260 I
e cebCap1.NW_016107979v1       298084 42 -   1024465 I
e otoGar3.GL873530            6767396 56 -  36342412 I
e saiBol1.JH378276             512877 0 -   3282555 C

a score=206970.000000
s hg38.chr15_KI270850v1_alt    195790 58 +    430880 TCtttctc----------tt---ttttct-----------------------------tttttt----tttcttttgagatggagtcttgctctgtggcccagg
s panTro5.chr15              18005447 90 -  83230942 TCTttttc----------ttttcttttcttttcttttcttttcttttcttttcttttcttttct----tttcttttgagatggagtctcgctctgtggcccagg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231748 55 -  99763055 TCtttttc----------tt---ttc--------------------------------ttttct----tttcttttgagatggagtctcgctctgtggcccagg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294389 59 +    378907 TCtttctc----------tt---ttttctt----------------------------tttttt----tttcctttgagatggagtcttgctctgtggcccagg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149938 57 + 121039945 TCtttttc----------tt---ttttc------------------------------tttttt----tttcttttgagatggagtcttgctctgtggcccagg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360896 62 + 169600520 TTTCTCtt---tctctctct---ttt--------------------------------tttttt----tttcttttgagatggagtcttgctctgtggcccagg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348019 47 - 171882078 TCtttttc-----------------------------------------------------ttt----tttcttttgagatggagtcttgctctgtggcccagg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5356971 65 -   6271500 tctttttcttttttcttttc---ttt--------------------------------tttttt----tttcttttgagatggcgccttgctctgtggcccagg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816611 61 -   1987038 TTTCTCTC---TCTCTCttt---ttt--------------------------------tt-ttt----tttcttttgagatggagtcttgctctgtggcccagg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067680 51 -  24206276 TCtttttc-----------------------------------------------------ttttttctttctttcgagatggagtcttgctctgtggcccagg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304125 47 -   1458659 TCtttttc-----------------------------------------------------ttt----tttcttttgagatggagtcttgctctgtggcccagg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476397 55 -   9444221 TCtttttc----------tt---ttt--------------------------------cttttt----tttcttttgagatggagtcttgttctatggcccagg
i colAng1.NW_012112253v1    C 0 C 0
e micMur3.chr3                 926827  0 - 119751181 C
e proCoq1.NW_012149419v1       650656 13 -   2566024 I
e aotNan1.NW_018511953v1       743829  3 -   3745603 I
e mm10.chr9                  55183035  4 + 124595110 I
e dasNov3.JH569975              46442  0 -   2180720 C
e canFam3.chr30                 54699  8 -  40214260 I
e cebCap1.NW_016107979v1       298084 42 -   1024465 I
e otoGar3.GL873530            6767396 56 -  36342412 I
e saiBol1.JH378276             512877  0 -   3282555 C

a score=154635.000000
s hg38.chr15_KI270850v1_alt    195848 28 +    430880 ccagagttc---------------agtggcaccatctcagctc
s panTro5.chr15              18005537 28 -  83230942 ccagagtgc---------------ggtggcaccatctgaactc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231803 28 -  99763055 ccagagtgc---------------ggtggcaccatctgaactc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294448 28 +    378907 ccagagttc---------------agtggcaccatctcagctc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102149995 28 + 121039945 tcagagttc---------------agtggcaccatctcagctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360958 28 + 169600520 ccagagtgc---------------tgtagtgccatctcaactc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348066 28 - 171882078 ccagagtgc---------------agtggcaccatctcagctc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357036 28 -   6271500 ccagggtgc---------------agtggcaccatctcagctc
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816672 28 -   1987038 ccagagtgc---------------tgtggtgccatctcagctc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067731 28 -  24206276 ccagagtgc---------------agtggcaccatctcagctc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304172 28 -   1458659 ccagagtgc---------------agtggcaccatctcagctc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476452 28 -   9444221 ccagagtgc---------------agtggtgccatctcagctc
i colAng1.NW_012112253v1    C 0 C 0
s otoGar3.GL873530            6767452 43 -  36342412 ccagagttcgagaccagcctgagaaagagcaacatctcatctc
i otoGar3.GL873530          I 56 I 282
e micMur3.chr3                 926827  0 - 119751181 C
e proCoq1.NW_012149419v1       650656 13 -   2566024 I
e aotNan1.NW_018511953v1       743829  3 -   3745603 I
e mm10.chr9                  55183035  4 + 124595110 I
e dasNov3.JH569975              46442  0 -   2180720 C
e canFam3.chr30                 54699  8 -  40214260 I
e cebCap1.NW_016107979v1       298084 42 -   1024465 I
e saiBol1.JH378276             512877  0 -   3282555 C

a score=398047.000000
s hg38.chr15_KI270850v1_alt    195876  89 +    430880 actactacctccacctcccaggttcaagtgattatcttgcctcaacttcccgagtagctgggac----------------tacaggcacatgcaaccatgcccgg
s panTro5.chr15              18005565  89 -  83230942 actactatctccacctcccaggttcaagtaattatcttgcctcagcttctccagtagctgggac----------------tacaggcacgtgcaaccatgcccgg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231831  89 -  99763055 actactatctccacctcccaggttcaagtaattatcttgcctcagcttctccagtagctgggac----------------tacaggcacgtgcaaccatgcccgg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294476  89 +    378907 actagtacctccaagtcccaggtgcaagtgattatcttgcctcaacttcccgagtagctgggag----------------tataggcacatgcaaccatgcccgg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150023  89 + 121039945 actactacctccacctcccaggttcaagtgattatcttgcctcaacttcccgagtagctgggac----------------tacaggcacatgcaaccgtgcccgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60360986 105 + 169600520 actactacctccaccttccgggttccagtgattctcttgcctcagcttcctgagtagctgaaatgagttgcatataggcacacaggcgcatgcaaccaggcccag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348094  89 - 171882078 agtattacctccaccttctgggttcaagtgattctcttgcctcagcttccctagtagctgggac----------------tacaggcacgtgcatccacacctcg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357064  89 -   6271500 actaccacctccaccttgcaggttcaactgattatcttgcctcagcttcctgggcacctgggac----------------tacaggcacgtgcaaccacacctga
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816700 105 -   1987038 actactacctccaccttccgggttcaagtgattctcttgcctcagcttcgtgagtagctgaaattagttgcatataggcacacaggcgcatgcaaccaggcccag
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067759  89 -  24206276 agtattacctccaccttccgggttcaagtgattctcttgcctcagcttccctagtagctgggac----------------tacaggcacgtgcatccacacctgg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304200  89 -   1458659 agtattacctccaccttctgggctcaagtgattctcttgcctcagcttccctagtagctgggac----------------tacaggcatgttcatccacacctca
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476480  89 -   9444221 attgctatgtccacctcccaggttcaagtgattctcttgcctcagcctcctgagtagctgggac----------------tataggcttgtgcaaccatgcctgg
i colAng1.NW_012112253v1    C 0 C 0
e micMur3.chr3                 926827   0 - 119751181 C
e proCoq1.NW_012149419v1       650656  13 -   2566024 I
e aotNan1.NW_018511953v1       743829   3 -   3745603 I
e mm10.chr9                  55183035   4 + 124595110 I
e dasNov3.JH569975              46442   0 -   2180720 C
e canFam3.chr30                 54699   8 -  40214260 I
e cebCap1.NW_016107979v1       298084  42 -   1024465 I
e otoGar3.GL873530            6767495 282 -  36342412 I
e saiBol1.JH378276             512877   0 -   3282555 C

a score=619438.000000
s hg38.chr15_KI270850v1_alt    195965 137 +    430880 ccaacttttgta-ttttttaaatcagagatggggtttcatgctgatgaccaggctggtttcaaactcttggcctcaagtgatccacctgcctcggcctcccaaagtgctgggattataggtgtgaac-cactgtgcctg
s panTro5.chr15              18005654 136 -  83230942 ccaacttttgta-tttttttagt-ggagatggggtttcatcctgatggccaggctggtttcaaactcttggcctcaagtgatccgcgcccctcagcctcccaaagtgctgggattacaggtgtgagc-caccgtgcctg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17231920 136 -  99763055 ccaacttttgta-tttttttagt-ggagatggggtttcatcctgatggccaggctggtttcaaactcttggcctcaagtgatccgcgcccctcagcctcccaaagtgctgggattacaggtgtgagc-caccgtgcctg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294565 137 +    378907 ccaacttttgta-ttttttttatcagagatggggtttcatgctgatggccaggctggtttcaaactcttggcctcaagtgatccacctgcctcggcctcccatagtgctgggattataggtgtgaac-cactgtgcctg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150112 139 + 121039945 ccaacttttgtattttttttaattagagatggggtttcatgctgatggcgaggctggtttcaaactcttggcctcaagtgatccacccgcctcagccttctgaaatgctgggattacagctgggattacactgtgcctg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361091 135 + 169600520 ccaacttttgta-tttttgtagt-ggagatggggtgtcatcctgatggccagggtggtttcaaactcccagcctcaggtgatccaccctcctcagcctcccaaagtgctgggattacaggtgtgagc-cccc-tgcctg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348183 135 - 171882078 ccaactttcgta-tttttttagt-atagatggggtttcatcctgacggccaggctggtttcaaactcttggcctcacgtgatctacctgcctcggcctcccaaagtgctgggattacaggtgtgagc-cccc-tgcctg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357153 136 -   6271500 ctgacttttgta-attttttagt-agagatgtggtttcatcctgatggccaggttgatttcaaactcttggcctcaagtgatccacctgcctcagcctcccaaagtgctgggattacaggtatgagc-caccgtgcctg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816805 135 -   1987038 ccaacttctgta-tttttgtagt-ggagatggggtgtcatcctgatggccaaggtggtttcaaactcccggcctcaggtgatccaccctcctcagcctcccaaagtgctgggattacaggtgtgagc-cccc-tgcctg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067848 135 -  24206276 ccaacttttgta-attttttagt-ataggtggggtttcatcctgacggccaggctggtttcaaactcttggcctcacatgatccacccgcctcggcctcccaaagtgctgggattacaggtgtgagc-cccc-tgcctg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304289 135 -   1458659 ccaacttttgta-tttttttagt-atagatggggtttcatcctgacggccagggtggtttcaaactcttggcctcacgtgatccgcccacctcggcctcccaaagtgctgggattaccggtgtgatc-cccc-tgcctg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476569 136 -   9444221 ctaacttttgta-ttttttaagt-agagatggggtttcatcttgtcggccaggctggttgcaaactcctggcctcaagcaaaccaccctcctcggcctcccaaactgctgggattgcaggtgtgagc-caccacgcctg
i colAng1.NW_012112253v1    C 0 C 0
s dasNov3.JH569975              46442  38 -   2180720 CCAGTTTTTGCA-TTC-----AT----------------------------------TTGCAAACTTTT-------------------------------------------ATTTCAGGT------------------
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 926827   0 - 119751181 C
e proCoq1.NW_012149419v1       650656  13 -   2566024 I
e aotNan1.NW_018511953v1       743829   3 -   3745603 I
e mm10.chr9                  55183035   4 + 124595110 I
e canFam3.chr30                 54699   8 -  40214260 I
e cebCap1.NW_016107979v1       298084  42 -   1024465 I
e otoGar3.GL873530            6767495 282 -  36342412 I
e saiBol1.JH378276             512877   0 -   3282555 C

a score=14028.000000
s hg38.chr15_KI270850v1_alt    196102 2 +    430880 gc
s panTro5.chr15              18005790 2 -  83230942 gc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232056 2 -  99763055 gc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294702 2 +    378907 gc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150251 2 + 121039945 gc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361226 2 + 169600520 gc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348318 2 - 171882078 gc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357289 2 -   6271500 gc
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816940 2 -   1987038 gc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067983 2 -  24206276 gc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304424 2 -   1458659 gc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476705 2 -   9444221 gc
i colAng1.NW_012112253v1    C 0 C 0
s mm10.chr9                  55183039 2 + 124595110 GT
i mm10.chr9                 I 4 C 0
e micMur3.chr3                 926827 0 - 119751181 C
e proCoq1.NW_012149419v1       650656 13 -   2566024 I
e aotNan1.NW_018511953v1       743829 3 -   3745603 I
e dasNov3.JH569975              46480 0 -   2180720 C
e canFam3.chr30                 54699 8 -  40214260 I
e cebCap1.NW_016107979v1       298084 42 -   1024465 I
e otoGar3.GL873530            6767495 282 -  36342412 I
e saiBol1.JH378276             512877 0 -   3282555 C

a score=10920.000000
s hg38.chr15_KI270850v1_alt    196104 1 +    430880 T
s panTro5.chr15              18005792 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232058 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294704 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150253 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361228 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348320 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357291 1 -   6271500 T
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816942 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067985 1 -  24206276 T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304426 1 -   1458659 T
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476707 1 -   9444221 T
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             512877 1 -   3282555 T
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       743832 1 -   3745603 T
i aotNan1.NW_018511953v1    I 3 C 0
s micMur3.chr3                 926827 1 - 119751181 T
i micMur3.chr3              C 0 C 0
s mm10.chr9                  55183041 1 + 124595110 T
i mm10.chr9                 C 0 C 0
e proCoq1.NW_012149419v1       650656 13 -   2566024 I
e dasNov3.JH569975              46480 0 -   2180720 C
e canFam3.chr30                 54699 8 -  40214260 I
e cebCap1.NW_016107979v1       298084 42 -   1024465 I
e otoGar3.GL873530            6767495 282 -  36342412 I

a score=26996.000000
s hg38.chr15_KI270850v1_alt    196105 2 +    430880 AC
s panTro5.chr15              18005793 2 -  83230942 AC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232059 2 -  99763055 AC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294705 2 +    378907 AC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150254 2 + 121039945 AC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361229 2 + 169600520 AC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348321 2 - 171882078 AC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357292 2 -   6271500 AC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816943 2 -   1987038 AC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067986 2 -  24206276 AC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304427 2 -   1458659 AC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476708 2 -   9444221 AC
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             512878 2 -   3282555 AC
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       743833 2 -   3745603 AC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 926828 2 - 119751181 AC
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6767777 2 -  36342412 AC
i otoGar3.GL873530          I 282 C 0
s mm10.chr9                  55183042 2 + 124595110 AC
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 54707 2 -  40214260 AT
i canFam3.chr30             I 8 C 0
e proCoq1.NW_012149419v1       650656 13 -   2566024 I
e dasNov3.JH569975              46480 0 -   2180720 C
e cebCap1.NW_016107979v1       298084 42 -   1024465 I

a score=207716.000000
s hg38.chr15_KI270850v1_alt    196107 18 +    430880 TGTAATCTTTTAGAGCAG
s panTro5.chr15              18005795 18 -  83230942 TGTAATCTTTTAGAGCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232061 18 -  99763055 TGTAATCTTTTAGAGCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294707 18 +    378907 TGTAATCTTTTAGAGCAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150256 18 + 121039945 TGTAATCTTTTAGAGCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361231 18 + 169600520 TGTAATCTTTTAGAGCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348323 18 - 171882078 TGTAATCTTTTAGAGTAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357294 18 -   6271500 TGTAATCTTTTAGAGCAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816945 18 -   1987038 TGTAATCTTTTAGAGCAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21067988 18 -  24206276 TGTAATCTTTTAGAGCAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304429 18 -   1458659 TGTAATCTTTTAGAGTAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476710 18 -   9444221 TGTAATCTTTTAGGTCAG
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             512880 18 -   3282555 TGTAATCTTTTGTATCAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       298126 18 -   1024465 TGTAATCTTTTGTATCAG
i cebCap1.NW_016107979v1    I 42 C 0
s aotNan1.NW_018511953v1       743835 18 -   3745603 TGTAATCTTTTGTATCAG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 926830 18 - 119751181 TGTAAACTTTTATATCAA
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6767779 18 -  36342412 TGTAAACTTTTATATCAG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55183044 18 + 124595110 TGTAAAATTTTACATCAG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 54709 18 -  40214260 TGTAAACCTTCATTTCAG
i canFam3.chr30             C 0 C 0
e proCoq1.NW_012149419v1       650656 13 -   2566024 I
e dasNov3.JH569975              46480  0 -   2180720 C

a score=3483716.000000
s hg38.chr15_KI270850v1_alt    196125 270 +    430880 GTTGAAATACCTTAAATCTTTAAATTAGTTGGCTCAGTAGACCCTGGTAAACAGCGGCTTTTGTGTTTCCGGCTGAAGTGTCTGGGTCAGTGCAAGCTTGCAAGCTTCAGATAGACTTATACATATACAGGGCTCAGGGACATATACAGATCACAGAGTTATAAGACAGGTAAGGATCT-------CTAAATCCCTTC--------------TCTTATTGTTCT--------TTTGTT--------------------------------------------------------------CTTTTCTGTT-------------GTCAGATTA---TA--------------------AATGTCATTTCTTA-----AAGC-----TGGACAGAAATGGAAATGTTTA
s panTro5.chr15              18005813 260 -  83230942 GTTGAAATACCTTAAATCTTTAAATTAGTTGGCTCAGTAGACCCTGGTAAACAGCAGCTTTTGTGTTTCAGGCTGCAGTGTCTGGGTCAG--------TGCAAGCTTCAGATAGACTTA-----AGAAAGAGTTCAGGGACTTATACAGATCACAGAGTTATAAGACAGGTAAGGATCT-------CCAAATCCCTGCTCT-----------TCTTATCATTCT--------TTTGTT--------------------------------------------------------------CTTTTCTGTT-------------GTCAGATTA---TA--------------------AATGTTGTTTCTTA-----AAAC-----TGGACAGAAATGGAAATGTTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232079 260 -  99763055 GTTGAAATACCTTAAATCTTTAAATTAGTTGGCTCAGTAGACCCTGGTAAACAGCAGCTTTTGTGTTTCAGGCTGCAGTGTCTGGGTCAG--------TGCAAGCTTCAGATAGACTTA-----AGAAAGAGTTCAGGGACTTATACAGATCACAGAGTTATAAGACAGGTAAGGATCT-------CCAAATCCCTGCTCT-----------TCTTATCATTCT--------TTTGTT--------------------------------------------------------------CTTTTCTGTT-------------GTCAGATTA---TA--------------------AATGTTGTTTCTTA-----AAAC-----TGGACAGAAATGGAAATGTTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294725 273 +    378907 GTTGAAATACCTTAAATCTTTAAATTAGTTGGCTCAGTAGACCCTGGTAAACAGCGGCTTTTGTGTTTCCGGCTGAAGTGTCTGGGTCAGTGCAAGCTTGCAAGCTTCAGATAGACTTATACATATACAGGGCTCAGGGACATATACAGATCACAGAGTTATAAGACAGGTAAGGATCT-------CTAAATCCCTGCTCT-----------TCTTATTGTTCT--------TTTGTT--------------------------------------------------------------CTTTTCTGTT-------------GTCAGATTA---TA--------------------AATGTCATTTCTTA-----AAGC-----TGGACAGAAATGGAAATGTTTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150274 268 + 121039945 GTTGAAATACCTTAAATCTTTAAATTAGTTGGCTCAGTAGACCCTGGTAAACAGCGGCTTTTGTGTTTCCAGCTGCAGTGTCTGGGTCAGTGCAAGCTTGCAAGCTTCAGATAGACTTA-----CAGGAGAGCTCAGGGACATATACAGATCACAGAGTTATAAGACAGGTAAGGATCT-------CTAAATCCCTGCTCT-----------TCTTATTGTTCT--------TTTGTT--------------------------------------------------------------CTTTTCTGTT-------------GTCAGATTA---TA--------------------AATGTCATTTCTTA-----AAGC-----TGGACAGAAATGGAAATGTTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361249 256 + 169600520 GTTGAAATACCTTAAGTCTTTAAATTAGTTGGCTCAGTAGACCCTGGTAAACAGTGGCTTTTGTGTTTCAGGCTGCAGTGTCTGGGTCAG--------TGCAAGCTTCAGATAGATTTA-----TGAAAGAACTCGGGAACATATATAGATCACAGAGTTATAAGACAGGTAAGGATCT-------CTAAATCCCTGC--------------TCTTATTGTTCT--------TTTGTT--------------------------------------------------------------CTTTTCTGTT-------------GTCAGATTA---TA--------------------AATATCATTTCTTA-----AAAC-----TGGACAGAAATGG-AATGTTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348341 256 - 171882078 GTTGAAATACCTTAAATTTTTAAATTAGTTGGCTCAGTAGACCCTGGTAAACAGTGGCTTTTGTGTTTCAGGCTGCAGTGTCTGGGTCAG--------TGTAAGCTTCAGATAGACTTA-----CGGAAGAGCTCAGGGACATATATAGATCACAGAGTTATAAGACAGGTAAGGATCT-------CTAAATCCCTGC--------------TCTTATTGTTC---------TTTGTT--------------------------------------------------------------CTTTTCTGTT-------------GTCAGATTA---TA--------------------AATATCATTTCTTA-----AAAC-----TGGACAGAAATGGAAATGTTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357312 260 -   6271500 GTTGAAATACCTCAAATCTTTACATTAGTTGATTCAGTTGACCCTAGTAAACAGTGGCCTTTCTGTTTCAGCCTGCAGTGTCTGGGTTAG--------TGCAAGCTTCAGATAGACTTA-----TGAAAGGGCTCAGGGACATATACAGATCACAGAGTTATAAGACAGGTAAGGATCT-------CTAAATCCCTGCTCT-----------TCTTACTGTTCT--------TTTGTT--------------------------------------------------------------CTTTTCTGTT-------------GTCTGATTA---TA--------------------AATGTCATTTCTTA-----AAAC-----TGGGCAGAAATGGAAATGATTA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1816963 257 -   1987038 GTTGAAATACCTTAAATCTTTAAATTAGTTGACTCAGTAGACCCTGGTAAACAGTGGCTTTTGTGTTTCAGGCTGCAGTGTCTGGGTCAG--------TGCAAGCTTCAGATAGATTTA-----TGAAAGAACTCGGAAACATATATAGATCACAGAGTTATAAGACAGGTAAGGATCT-------CTAAATCCCTGC--------------TCTTATTGTTCT--------TTTGTT--------------------------------------------------------------CTTTTCTGTT-------------GTCAGATTA---TA--------------------AATATCATTTCTTA-----AAAC-----TAGACAGAAATGGAAATGTTTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068006 257 -  24206276 GTTGAAATACCTTAAATCTTTAAATTAGTTGGCTCAGTAGACCCTGGTAAACAGTGGCTTTTGTGTTTCAGGCTGCAGTGTCTGGGTCAG--------TGCAAGCTTCAGATAGACTTA-----CAGAAGAGCTCAGGGACATATAGAGATCACAGAGTTATAAGACAGGGAAGGATCT-------CTAAATCCCTGC--------------TCTGATTGTTCT--------TTTGTT--------------------------------------------------------------CTTTTCTGTT-------------GTCAGATTA---TA--------------------AATGTCATTTCTTA-----AAAC-----TGGACAGAAATGGAAATGTTTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304447 257 -   1458659 GTTGAAATACCTTAAATTTTTAAATTAGTTGGTTCAGTAGACCCTGGTAAACAGTGGCTTTTGTGTTTCAGGCTGCAGTGTCTGGGTCAG--------TGTAAGCTTCAGATAAACTTA-----CGGAAGAGCTCAGGGACATATATAGATCACAGAGTTATAAGACAGGTAAGGATCT-------CTAAATCCCTGC--------------TCTTATTGTTCT--------TTTGTT--------------------------------------------------------------CTTTTCTGTT-------------GTCAGATTA---TA--------------------AATATCATTTCTTA-----AAAC-----TGGACAGAAATGGAAATGTTTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476728 260 -   9444221 GTTGAAATACCTTAAATCTTTAAATTAGTTGGCTCAGTAGACCCTGGTAAACAGTGGCTTTTGTGTTTCAGGCTGCAGTGTCTAGGTCAG--------TGCAAGCTTCAGAGAGACTTA-----TGAAAGAGCTCAGGGACATACACAGATCACAGATTTATAAGACAGCTAAGAATCT-------CTAAAACCCCGCTCT-----------TCTTATTGTTCT--------TTTGCT--------------------------------------------------------------CTTTTCTGTT-------------GTCAGATTG---TA--------------------AGTGTCATTTCTTA-----AAAC-----TGGGCAAAAATGGAAATGTTTA
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             512898 256 -   3282555 ATTGAAATACCTTAAATCTTTA-ATTACTTGGCTCAACGGACCCTGGTAAACAGTGGTTTTTGTGTTTCAGGGTGCGGTGTCTGGGTCAG--------TGCAAGCTTCAGATAGACTTA-----TGAAAGAGCTCAGGGACATATACAGATCACAGAGTTATAAAACAGGTAAGGATTC-------CTGGATCCCCACTCT-----------CCTTATGG---T--------TCTGCT--------------------------------------------------------------CTTTTCTATT-------------GTCAGGTTG---TA--------------------AATGTCATTTCTTA-----AAAC-----TGGACTGAAATGGAAATGTTTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       298144 259 -   1024465 GTTGAAGTACCTTAAATCTTTA-ATTACTTGGCTCAATGGACCCTGGTAAACAGTGGCTTTTGTGTTTCAGGGTGCGGTGTCTGGGTCAG--------TGCAAGCTTCAGATAGACTTA-----TGAAAGAGCTCAGGGACATATACAGATCACAGAGTTATAAAACAGGTAAGGATCC-------CTGGATCCCTGCTCT-----------CCTTATGATTCT--------TCTGCT--------------------------------------------------------------CTTTCCTATT-------------GTCAGGTTG---TA--------------------AATGTCATTTCTTA-----AAAC-----TGAACTGAAATGGAAATGTTTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       743853 258 -   3745603 GTTGAAATACCTTAAATCTTTA-ATTAC-TGGCTCAACGGACCCTGGTAAACAGTGGCTTTTGTGTTTCAGGGTGCGGTGTCTGGGTCAG--------TGCAAGCTTCAGATAGACTTA-----TGAAAGAGCTCAGGGACATATACAGATCACAGAGTTATAAAACAGGTAAGGATCC-------CTGGATCCCTGCTCT-----------CCTTATGGTTCT--------TCTGCT--------------------------------------------------------------CTTTTCTATT-------------GTCAGGTTG---TA--------------------AATGTCATTTCTTA-----AAAC-----TGGACTGAAATGGAAATGTTTA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 926848 252 - 119751181 GTTGAAATATCTTAAATCTTTA-ATTACTTGACTCAGTAGACCTTGGTAAACAGCAAGTTTTATGTTTCAGGGTGCAGTGTCTGGGTCGG--------TGCAAGCTTCAGATAGACTTA-----TGAAAGAGCTCAGGGACATATACAGATCACAGAGTTATAAAACAGGTAAGGACCT-------CTGGATCTCTGT--------------TGTTCCTGTTAT--------TTTGTT--------------------------------------------------------------CTTTTCTATT-------------TTCAGGT---------------------------AATGTCATTTCTTA-----TAAC-----TGGATAGAAATGGAAATGTTTA
i micMur3.chr3              C 0 I 14
s proCoq1.NW_012149419v1       650669 252 -   2566024 GTTGAAATACCTTAAATATTTA-ATTACTTGACTCAAGAGACCTTGGTAAACAGCGAGTTTTATGTTTCAGGGTGCAGTGTCTGGGTCAG--------TGCAAGCTTCAGACAGACTTA-----TGAAAGAGCTCAGGGACATATACAGATCACAGAGTTATAAAACAGGTAAGGACCT-------CTGGATCTCTGT--------------TGTTCCTGTTAT--------TTTGTT--------------------------------------------------------------TTTTTCTATT-------------TTCAGAT---------------------------AATGTCATTTCTTA-----TAAC-----TAGACAGAAATGGAAATGTTTA
i proCoq1.NW_012149419v1    I 13 C 0
s otoGar3.GL873530            6767797 259 -  36342412 ATTAAAATACCTTAAATCTGTA-ACTATTTGACTCAATAGACCCTGGTAAACAGCGAGTTTTATGTTTCAGGGTGCAGTGTCTGGGTCAG--------TACAAGCCTCAGATAGACTTA-----TGAAAGAGCTCAGGGACATATACAGATCACAGAGTTATAAAACAGGTAAGGACCT-------CTGGATCTCTGC--------------TATTTCTGTTGTATTAGATCTCTTTT--------------------------------------------------------------GTTTTCTATC-------------TTCAGAT---------------------------AATGTCATTTCTTA-----TAAC-----TGGACAGAAATGGAAATGTTT-
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55183062 346 + 124595110 GCTTTGATACCTTAAGCCTTTA-ATTA------TTAAT-------------------------TGTTTCAGGGTGCAGTGTCTGGGTCAG--------TACAAGCATCAGACAGACTGA-----TGAAGGAGCTCAGGGACGTCTACAGATCACAGAGCTACAAGGCAGGTGAGGCCCTGGCTCTGCTGGCCATTTGCTTCTTTACATGGAATGTTGTTTCTCT--------TTTGCTTTGCTTTCCTTTTGGGGAGTGATGGGGGGACCATTTAGCGCAAACTGTTTTTGAACTCACTATTTTTCTGTTTGGTCATGATGGGGTTAGATAA---TGTGGGGCCACCACACCAACTTTGTGTCATTTACTG-----TAATGTAGGTAGACAGAGTTGGAAATTTTTA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 54727 254 -  40214260 ATTTCTATACCTGAAATCTTCA-GTTATTTGACTCCATAGATCCTGGTAAACAGCAGTTTTTATGTTGCAGGGTGCAGTGTCTGGGTCTG--------TGCAAGCTTCAGATAGACTTA-----TGAAAGAGCTCAGGGACATATACCGATCACAGAGTTATAAAGCAGGTAAGGACCT-------CTGGATCTCTCCTCT-----------CCTT----------------AATGCT--------------------------------------------------------------GTTTTTAATT-------------TTCAGAGAGAGTAA--------------------TACTTCAGTTCTTA-----TAAG-----TAGATAGAAACAGAAATGGTTG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              46480 248 -   2180720 --TCAGACACCTTAAATCTTTA-ATTACTTGACTCAGTAGACCCTGGTTAACAGTGAGTTTTATGTTTCAGGGTGCAGTGTCTGGGTCAG--------TTCAAGCTTCAGATAGACTTA-----TGAAAGAGCTCAGGGACATATACAGATCACAGAGTTATAAAACAGGTAAG---CT-------GT------------------------CTCTCTTGTCCT--------TATGCT--------------------------------------------------------------CTTTTCTATT-------------CTCATATAA-CTTA--------------------AGCTTCATTTTTTGTCATCTAAC-----CGGACAGAAATGGAAATGTTTA
i dasNov3.JH569975          C 0 C 0

a score=147863.000000
s hg38.chr15_KI270850v1_alt    196395 12 +    430880 CTAGCTTTATTT
s panTro5.chr15              18006073 12 -  83230942 CTAGCTTTATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232339 12 -  99763055 CTAGCTTTATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       294998 12 +    378907 CTAGCTTTATTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150542 12 + 121039945 CTAGCTTTATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361505 12 + 169600520 CTAGCCTTAATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348597 12 - 171882078 TTAGCTTTATTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357572 12 -   6271500 CTAGTTTTATTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1817220 12 -   1987038 CTAGCCTTAATT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068263 12 -  24206276 TTAGCTTTATTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304704 12 -   1458659 TTAGCTTTATTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7476988 12 -   9444221 CTAGCTTTATTT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             513154 12 -   3282555 CTGGCTTTATTT
i saiBol1.JH378276          C 0 I 6
s cebCap1.NW_016107979v1       298403 12 -   1024465 CTGGCTTTATTT
i cebCap1.NW_016107979v1    C 0 I 6
s aotNan1.NW_018511953v1       744111 12 -   3745603 CTGGCTTTATTT
i aotNan1.NW_018511953v1    C 0 I 6
s proCoq1.NW_012149419v1       650921 12 -   2566024 TTAATTTTATTT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6768056  5 -  36342412 -------TATTT
i otoGar3.GL873530          C 0 I 6
s mm10.chr9                  55183408 12 + 124595110 TTAATGTTATTT
i mm10.chr9                 C 0 I 6
s canFam3.chr30                 54981 12 -  40214260 TTAACTTTATTT
i canFam3.chr30             C 0 I 6
s dasNov3.JH569975              46728 12 -   2180720 TTAACCTTATTT
i dasNov3.JH569975          C 0 I 6
e micMur3.chr3                 927100 14 - 119751181 I

a score=19110.000000
s hg38.chr15_KI270850v1_alt    196407 1 +    430880 T
s panTro5.chr15              18006085 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232351 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295010 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150554 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361517 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348609 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357584 1 -   6271500 T
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1817232 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068275 1 -  24206276 T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304716 1 -   1458659 T
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7477000 1 -   9444221 T
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             513172 1 -   3282555 T
i saiBol1.JH378276          I 6 C 0
s cebCap1.NW_016107979v1       298421 1 -   1024465 T
i cebCap1.NW_016107979v1    I 6 C 0
s aotNan1.NW_018511953v1       744129 1 -   3745603 T
i aotNan1.NW_018511953v1    I 6 C 0
s micMur3.chr3                 927114 1 - 119751181 T
i micMur3.chr3              I 14 C 0
s proCoq1.NW_012149419v1       650933 1 -   2566024 T
i proCoq1.NW_012149419v1    C 0 I 16
s otoGar3.GL873530            6768067 1 -  36342412 T
i otoGar3.GL873530          I 6 C 0
s mm10.chr9                  55183426 1 + 124595110 T
i mm10.chr9                 I 6 C 0
s canFam3.chr30                 54999 1 -  40214260 T
i canFam3.chr30             I 6 C 0
s dasNov3.JH569975              46746 1 -   2180720 T
i dasNov3.JH569975          I 6 C 0

a score=120411.000000
s hg38.chr15_KI270850v1_alt    196408 8 +    430880 GTGAAACT
s panTro5.chr15              18006086 8 -  83230942 GTGAAACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232352 8 -  99763055 GTGAAACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295011 8 +    378907 GTGAAACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150555 8 + 121039945 GTGAAACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361518 8 + 169600520 GTGAAACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348610 8 - 171882078 GTGAAACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357585 8 -   6271500 GTGAAACT
i macNem1.NW_012011056v1    C 0 I 5
s cerAty1.NW_012002657v1      1817233 8 -   1987038 GTGAAACT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068276 8 -  24206276 GTGAAACT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304717 8 -   1458659 GTGAAACT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7477001 8 -   9444221 GTAAAATT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             513173 8 -   3282555 GTGAAACT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       298422 7 -   1024465 GTGAAAC-
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       744130 8 -   3745603 GTGAAACT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 927115 8 - 119751181 GTGAAACT
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6768068 8 -  36342412 GTGAAACT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55183427 8 + 124595110 GTGAAACT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 55000 8 -  40214260 GTAAAATG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              46747 8 -   2180720 GTGAAACT
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       650934 16 -   2566024 I

a score=58598.000000
s hg38.chr15_KI270850v1_alt    196416 7 +    430880 CAAATGC
s panTro5.chr15              18006094 7 -  83230942 CAAATGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232360 7 -  99763055 CAAATGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295019 7 +    378907 CAAATGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150563 7 + 121039945 CAAATGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361526 7 + 169600520 CAAATGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348618 7 - 171882078 CAAACAC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1817241 7 -   1987038 CAAATGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068284 7 -  24206276 CAAACAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304725 7 -   1458659 CAAACAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7477009 7 -   9444221 CAAAGGC
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             513181 7 -   3282555 GAAATGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       298429 6 -   1024465 -AAATGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       744138 7 -   3745603 GAAATGC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 927123 7 - 119751181 CAAATAT
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6768076 7 -  36342412 CAAATGT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55183435 7 + 124595110 CAGGTTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 55008 7 -  40214260 TAGATTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              46755 7 -   2180720 CAAATTT
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       650934 16 -   2566024 I
e macNem1.NW_012011056v1      5357593 5 -   6271500 I

a score=485252.000000
s hg38.chr15_KI270850v1_alt    196423 42 +    430880 AATCAAGTTC-CAAAAGATGTAGGGGG-TAAGATAGGATGAGTT
s panTro5.chr15              18006101 42 -  83230942 AATCAAGTTC-CAAAAGATGTAGGGAG-TAAGATAGGATGAGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232367 42 -  99763055 AATCAAGTTC-CAAAAGATGTAGGGAG-TAAGATAGGATGAGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295026 42 +    378907 AATCAAGTTC-CAAAAGATGTAGGGGG-TAAGATAGGATGAGTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150570 42 + 121039945 AATCAAGCTC-CAAAAGATGTAGGGGG-TAAGATAGGATGAGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361533 42 + 169600520 AATCAAGTTC-CAAAAGATGTAGGACG-CAAGATAGGATGAGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348625 42 - 171882078 AATCAAGTTC-CAAAAGATGTAGGAGG-TAAGATAGGATAAGTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1817248 42 -   1987038 AATCAAGTTC-CAAAAGATGTAGGACA-CAAGATAGGATGAGTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068291 42 -  24206276 AATCAAGTTC-CAAAAGATGTAGGGGG-TAAGATAGGATAAGTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304732 42 -   1458659 AATCAAGTTC-CAAAAGATGTAGGAGG-TAAGATAGGATAAGTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7477016 42 -   9444221 AATCAAGTTC-CAAAAGATGTAGGGGG-TAAGATAGGATGAGTT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             513188 40 -   3282555 AATAAAATTT-CAAAAGATGTAAGG-G-TAAAATAGGATGAG-T
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       298435 40 -   1024465 AATAAAATTC-CAAAAGATGTAGGG-G-TAAAATAGGATGAG-T
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       744145 40 -   3745603 AGTAAAATTC-CAAAAGATGTAGGG-G-TAAAATAGGATGAG-T
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 927130 40 - 119751181 AATCAAGTTC-CAAA--ATGTTAGGGG-TAAAATAAGATGAGTT
i micMur3.chr3              C 0 I 202
s proCoq1.NW_012149419v1       650950 40 -   2566024 AATCAAGCTC-CAAA--ATGTTGGGGG-TAAAATAAGATGAGTT
i proCoq1.NW_012149419v1    I 16 C 0
s otoGar3.GL873530            6768083 42 -  36342412 AATCAAGCTC-CAAAAGATGTTGGGGA-TAAAATAGGATGAGTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55183442 37 + 124595110 AACGAAATTC-TAAAAGATAAAAG------AGATAAAATGAGTT
i mm10.chr9                 C 0 I 4
s canFam3.chr30                 55015 43 -  40214260 AATCAAGTTAGCAAAAGATGTGGAAGG-TAACGTAGGATGAGTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              46762 44 -   2180720 AATCAAGCTAGTAAAAGATGTAAGGGGTTAAAATAGGATGAGTT
i dasNov3.JH569975          C 0 C 0
e macNem1.NW_012011056v1      5357593  5 -   6271500 I

a score=73583.000000
s hg38.chr15_KI270850v1_alt    196465 11 +    430880 TGCTTG-TTTTT
s panTro5.chr15              18006143 12 -  83230942 TGCTTGTTTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232409 12 -  99763055 TGCTTGTTTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295068 11 +    378907 TGCTTG-TTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150612 11 + 121039945 TGCTTG-TTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361575 12 + 169600520 TGCTTGTTTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348667 11 - 171882078 TGCTTG-TTTTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1817290 12 -   1987038 TGCTTGTTTTTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068333 11 -  24206276 TGCTTA-TTTTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304774 11 -   1458659 TGCTTG-TTTTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7477058 12 -   9444221 TACTTGTTTTTT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             513228 12 -   3282555 TGTTTGATTTTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       298475 12 -   1024465 TATTTGTTTTTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       744185 12 -   3745603 TATTTGTTTTTT
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       650990 11 -   2566024 TACTTG-TTTTT
i proCoq1.NW_012149419v1    C 0 I 165
s otoGar3.GL873530            6768125 11 -  36342412 TACTGT-TCTGT
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55183483  9 + 124595110 TTTTTG-TTT--
i mm10.chr9                 I 4 C 0
s canFam3.chr30                 55058 12 -  40214260 TACTTGGTCTTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              46806  7 -   2180720 ----TA-CCTTT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 927170 202 - 119751181 I
e macNem1.NW_012011056v1      5357593  5 -   6271500 I

a score=250606.000000
s hg38.chr15_KI270850v1_alt    196476 51 +    430880 GGATTTAAAGAAA------TTG-TTTTTATAGGTCCGTTGGAATTTT-TTTGGTCATCC
s panTro5.chr15              18006155 52 -  83230942 GGAATTAAAGAAA------TTG-TTTTTATAGGTCCATTGGAATTTTATTTTGCCATCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232421 52 -  99763055 GGAATTAAAGAAA------TTG-TTTTTATAGGTCCATTGGAATTTTATTTTGCCATCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295079 51 +    378907 GGATTTAAAGAAA------TTG-TTTTTATAGGTCCGTTGGAATTTT-TTTGGTCATCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150623 52 + 121039945 GGATTTAAAGAAA------TTGTTTTTTATAGGTCCATTGGAATTTT-TTTGGTCATCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361587 50 + 169600520 GGATTTGAAGAAA------TTG-TTTTTGTAGGTCCGTCGGAA-TTT-TTTTGTCATCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348678 51 - 171882078 GGATTTAAAGAAA------TTG-TTTTTATAAGCCCATTGGAATTTT-TTTTGTCATCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1817302 50 -   1987038 GGATTTGAAGAAA------TTG-TTTTTGTAGGTCCATCGGAA-TTT-TTTTGTCATCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068344 49 -  24206276 GGATTTAAAGAAA------TTG-TTTTTATAAGCCCATTGGAA--TA-TTTTGTCATCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304785 51 -   1458659 GGATTTAAAGAAA------TTG-TTTTTATAAGCCCATTGGAATTTT-TTTTGTCATCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7477070 51 -   9444221 GGATTTAAAGAAA------TTG-TTTTTATAGGTCCATCGGAATTTT-TTTTGTCATTT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             513240 44 -   3282555 GGATT---AAAAA------AGG-TTTTGATAGGTCCATTGGAA-----TTTTGTTCTCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       298487 45 -   1024465 GGATT--AAAAAA------AGG-TGTTTATAGGTCCATTGGAA-----TTTTGTCCTCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       744197 44 -   3745603 GGATT---AAAAA------AGG-TTTTTATAGGTCCATTGGAA-----TTTTGTCCTCT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6768137 39 -  36342412 GTATTTAAAAAAAAAAAACTTG-CTTTTATGCATATAATT-------------------
i otoGar3.GL873530          I 1 I 1
s mm10.chr9                  55183492 39 + 124595110 GTATtt-------------ttg-cttttttaga-----cagggtttt-tctgtgtatcc
i mm10.chr9                 C 0 I 396
s canFam3.chr30                 55070 36 -  40214260 GGATTTTTGAAAA------TGG-TTATAA---------------CTT-TTTTGTCTTCT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              46813 34 -   2180720 -------------------TTA-TTTTTATGGAAGCATCG----TTT-GATTGTATTCT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 927170 202 - 119751181 I
e proCoq1.NW_012149419v1       651001 165 -   2566024 I
e macNem1.NW_012011056v1      5357593  5 -   6271500 I

a score=171653.000000
s hg38.chr15_KI270850v1_alt    196527 28 +    430880 TCCTGAT--AGAG---TGAACA-TTTACATGATT
s panTro5.chr15              18006207 28 -  83230942 TCCTGAT--AGAG---TGAATA-TTTGCATGATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232473 28 -  99763055 TCCTGAT--AGAG---TGAATA-TTTGCATGATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295130 28 +    378907 TCCTGAT--AGAG---TGAACA-TTTACATGATT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150675 28 + 121039945 TCCTGAT--AGAG---TGAACA-TTTACATGATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361637 28 + 169600520 TCCTGAT--AGAG---TGAACA-TTTACATGATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348729 28 - 171882078 TCCTGAT--AGAG---TGAACA-TTTACATGATT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1817352 28 -   1987038 TCCTGAT--AGAG---TGAACA-TTTACATGATT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068393 28 -  24206276 TCCTGAT--AGAG---TGAACA-TTTATATGATT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304836 28 -   1458659 TCCTGAT--AGAG---TGAACA-TTTACATGATT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7477121 28 -   9444221 TCCTGAT--AGAG---TGAACT-CTTACATGATT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             513284 31 -   3282555 TCCTGATAAAGAG---TGAGCCCCCTGCATGACT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       298532 31 -   1024465 TCCTGATAAAGAG---TGAGCCCCCTGCATGATT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       744241 31 -   3745603 TCCTGATAAAGAG---TGAGCTCCCTGCATGATT
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  55183927 26 + 124595110 TTCTGAT--AAAG---ATATAA---TATATGATT
i mm10.chr9                 I 396 C 0
s canFam3.chr30                 55106 25 -  40214260 TGCTGAT--GGGGA--TTAACT-----CATGATT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              46847 20 -   2180720 -------------TCTTTATAA-CCCATATGAGT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 927170 202 - 119751181 I
e proCoq1.NW_012149419v1       651001 165 -   2566024 I
e otoGar3.GL873530            6768176  1 -  36342412 I
e macNem1.NW_012011056v1      5357593  5 -   6271500 I

a score=372043.000000
s hg38.chr15_KI270850v1_alt    196555 39 +    430880 TTTATCTTCTGGCAAAAAGCTTGAGCAATAT-TGCTTGAT-
s panTro5.chr15              18006235 39 -  83230942 TTTATCTTCTGGCAAAAAGCTTGAGCAATAT-TGCTTGAT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232501 39 -  99763055 TTTATCTTCTGGCAAAAAGCTTGAGCAATAT-TGCTTGAT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295158 39 +    378907 TTTATCTTCTGGCAAAAAGCTTGAGCAATAT-TGCTTGAT-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150703 39 + 121039945 TTTATCTTCTGGCAAAAAGCTCGAGCAATAT-TGCTTGGT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361665 39 + 169600520 TTTATCTTCTGGCAAAAAGCTTGAACAATAT-TGCCTGGT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348757 39 - 171882078 TTTATCTTCTGGCAAAAAGCTCGAGCAATAT-GGCTTGAT-
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1817380 39 -   1987038 TTTATCTTCTGGCAAAAAGCTTGAACAATAT-TGCCTGGT-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068421 39 -  24206276 TTTATCTTCTGGCAAAAAGCTCGAGCAATAT-GGCTTGAT-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       304864 39 -   1458659 TTTATCTTCTGGCAAAAAGCTCGAGCAATAT-GGCTTGAT-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7477149 39 -   9444221 TTTATCTTCTGGCAAAAAGCTTGAGCAATAC-TGCTTGGA-
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             513315 38 -   3282555 TTTATCTTTTGGT-GAAAGCATGAGCAATAT-TGCTTGGA-
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       298563 38 -   1024465 TTTATCTTTTGGT-GAAAGCATGAGCAATGT-TGCTTGGA-
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       744272 38 -   3745603 TTTATCTTCTGGT-GAAAGCATGAGCAATAT-TGCTTGGA-
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 927372 38 - 119751181 TTTATCTTCTGGC-AAAAGCATGAGTAATAT-TACTTTGG-
i micMur3.chr3              I 202 I 1
s otoGar3.GL873530            6768177 38 -  36342412 TTTATCTTCTGGC-AAAAGCATGAGTAATAT-TGCTTTGG-
i otoGar3.GL873530          I 1 I 1
s mm10.chr9                  55183953 37 + 124595110 TTTATTTTCTGGC-AAAAGCATGAGTAGTAC-TACTTTT--
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 55131 39 -  40214260 TTTAGCTTCTGGG-AAAGATATAAGTGATATCTGCTTTAG-
i canFam3.chr30             C 0 I 1
s dasNov3.JH569975              46867 40 -   2180720 GTTATCTTTTGGG-ATAACCAAAAGTAGTATCTGCTTTGGA
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       651001 165 -   2566024 I
e macNem1.NW_012011056v1      5357593  5 -   6271500 I

a score=701362.000000
s hg38.chr15_KI270850v1_alt    196594 61 +    430880 AAGTAAATAAGAG-TAA------TACATTTCATTAT----ACAGAGAATGATTGCCAAGTTGA-TTTTTGTGA
s panTro5.chr15              18006274 60 -  83230942 AATTTAATACAAA-TAA------TACATTTCAATAT----ACAGAGAATGATTGCCAAGTTGA--TTTTGTGA
i panTro5.chr15             C 0 I 1
s panPan2.chr15              17232540 60 -  99763055 AATTTAATACAAA-TAA------TACATTTCAATAT----ACAGAGAATGATTGCCAAGTTGA--TTTTGTGA
i panPan2.chr15             C 0 I 1
s gorGor5.CYUI01015946v1       295197 61 +    378907 AAGTAAATAAGAG-TAA------TACATTTCATTAT----ACAGAGAATGATTGCCAAGTTGA-TTTTTGTGA
i gorGor5.CYUI01015946v1    C 0 I 1
s nomLeu3.chr6              102150742 61 + 121039945 AAGGAAATAAGAG-TAA------TACATTTCATTAT----ACAGAGAATGATTGCCAAGTTGA-TTTTTGTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361704 61 + 169600520 AAGTAAATAAGAG-TAA------TACATTTCATTAT----ACAGAGAATGATTGCCAAGTTGA-TTTTTGTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348796 61 - 171882078 AAGTAAATAAAAG-TAA------TACATTTCATTAT----ACAGGGAATGATTGCCAAGTTGA-TTTTTGTGA
i macFas5.chr7              C 0 I 1
s cerAty1.NW_012002657v1      1817419 61 -   1987038 AAGTAAATAAGAG-TAA------TACATTTCATTAT----ACAGAGAATGATTGCCAAGTTGA-TTTTTGTGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068460 61 -  24206276 AAGTAAATAAAAG-TAA------TACATTTCATTAT----ACAGGGAATGATTGCCAAGTTGA-TTCTTGTGA
i chlSab2.chr29             C 0 I 1
s manLeu1.NW_012105520v1       304903 61 -   1458659 AAGTAAATAAAAG-TAA------TACATTTCATTAT----ACAGGGAATGATTGCCAAGTTGA-TTTTTGTGA
i manLeu1.NW_012105520v1    C 0 I 605
s colAng1.NW_012112253v1      7477188 61 -   9444221 AAGTAAATAAGAG-TAA------TATATTTCATTAT----ACAGAGAATGATTGCCAAGTTGA-TTTTTATGA
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             513353 62 -   3282555 AAGTAAATAAGAG-TAA------AGCATTTCATTGT----ACGGAGAATGATTGCCAAGTTGATTTTTTATTA
i saiBol1.JH378276          C 0 I 1
s cebCap1.NW_016107979v1       298601 61 -   1024465 AAGTAAATAAGAA-TAA------AGCATTTCATTGT----ACACAGAATGATTGCCAAGTTGA-TTTTTATTA
i cebCap1.NW_016107979v1    C 0 I 1
s aotNan1.NW_018511953v1       744310 61 -   3745603 AAGTAAATAAGAA-TAA------AGCGTTTCATTGT----ACAGAGAATGATTGCCAAGTTGA-TTTTTATTA
i aotNan1.NW_018511953v1    C 0 I 1
s micMur3.chr3                 927411 62 - 119751181 AAGTAAATAAAAGATAA------TATATTTGATTGT----ACAAAGAACTATTGCCAAGTTGA-TTTTTATGA
i micMur3.chr3              I 1 C 0
s proCoq1.NW_012149419v1       651166 62 -   2566024 aaGTAAATAAGAGATAA------TATATTTCATTGT----GCAAAGAACTATTGCCAAATTGA-TTTTTATGA
i proCoq1.NW_012149419v1    I 165 C 0
s otoGar3.GL873530            6768216 68 -  36342412 AAGTAAATAAAAGATAATACACGTATGTTTCATTGT----ACAAAGAACTATTGCCGAGTTGA-TTTTTATGA
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  55183990 59 + 124595110 --AAAAGTAAGAT-TAA------TATATTTTGTTGT----ACAAGGAAAACTTGCTGGATTTA-TTTTCATAG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 55171 59 -  40214260 AGGTAATTAAGAT---A------CATATATTATTGTATGAACAAAGAACTGTTGCTGAGTTGA-TTTTT----
i canFam3.chr30             I 1 C 0
s dasNov3.JH569975              46907 61 -   2180720 AAGTAGATAAGAT-TAA------TATATTTTATTGT----ATAAAGAACTTTTGCCAAGTTGA-TTTTTCCTC
i dasNov3.JH569975          C 0 C 0
e macNem1.NW_012011056v1      5357593  5 -   6271500 I

a score=185063.000000
s hg38.chr15_KI270850v1_alt    196655 26 +    430880 TTTTTCCCCCCAGTTTTGAAAGCAAC---
s panTro5.chr15              18006335 26 -  83230942 TTTTTTCCCCCAGTTTTGAAAGCAAC---
i panTro5.chr15             I 1 C 0
s panPan2.chr15              17232601 26 -  99763055 TTTTTTCCCCCAGTTTTGAAAGCAAC---
i panPan2.chr15             I 1 C 0
s gorGor5.CYUI01015946v1       295259 26 +    378907 TTTTCCCCCCCAGTTTTGAAAGCAAC---
i gorGor5.CYUI01015946v1    I 1 C 0
s nomLeu3.chr6              102150803 25 + 121039945 -TTTTTCCTCCAGTTTTGAAAGCAAC---
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361765 26 + 169600520 TTTTTCCCCCCAGTTTTGAAAGCAAC---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348858 26 - 171882078 TTTTTTCCCCTAAGTTTGAAAGCAAC---
i macFas5.chr7              I 1 C 0
s cerAty1.NW_012002657v1      1817480 26 -   1987038 TTTTTCCCCCCAGTTTTGAAAGCAAC---
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068522 26 -  24206276 TTTTTTCCCCCAAGTTTGAAAGCAAC---
i chlSab2.chr29             I 1 C 0
s colAng1.NW_012112253v1      7477249 25 -   9444221 -TTTTTCCCCCAGTTTTGAAAGCCAC---
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             513416 26 -   3282555 TCCCCACCCCCGATTTTGAAAGCAAT---
i saiBol1.JH378276          I 1 C 0
s cebCap1.NW_016107979v1       298663 26 -   1024465 TCCCCGCCCCCATTTTTGAAAGCGAT---
i cebCap1.NW_016107979v1    I 1 C 0
s aotNan1.NW_018511953v1       744372 26 -   3745603 TCCCCGCCCCCATTTTTGAAAGCAAT---
i aotNan1.NW_018511953v1    I 1 C 0
s micMur3.chr3                 927473 26 - 119751181 TTTTTCTCCCCTTTTTTGAAATCAAC---
i micMur3.chr3              C 0 I 2121
s proCoq1.NW_012149419v1       651228 26 -   2566024 TTTTTCTCCCCTTTTTTGAAATCAAC---
i proCoq1.NW_012149419v1    C 0 I 1781
s otoGar3.GL873530            6768284 26 -  36342412 TATCCTTCTTCTTTTTTGAAATCAAT---
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55184049 16 + 124595110 -----TTTTCTTATTTTGAAA--------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 55230 17 -  40214260 -------CCCCTTTTTTAAAAAAA-----
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              46968 22 -   2180720 -------CTTTTTTTTTGGAAACAAAAAA
i dasNov3.JH569975          C 0 C 0
e manLeu1.NW_012105520v1       304964 605 -   1458659 I
e macNem1.NW_012011056v1      5357593  5 -   6271500 I

a score=239406.000000
s hg38.chr15_KI270850v1_alt    196681 29 +    430880 ATAATCAACTCTTATTGTGGAGGTAGTTA
s panTro5.chr15              18006361 29 -  83230942 ATAATCAACTCTTATTGTGGAGGTAGTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232627 29 -  99763055 ATAATCAACTCTTATTGTGGAGGTAGTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295285 29 +    378907 ATAATCAACTCTTATTGTGGAGGTAGTTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150828 29 + 121039945 ATAATCAACTCTTATTGTGGAGGTAGTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361791 29 + 169600520 ATAATCAACTCTTATTGTGGAGGTAGTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348884 27 - 171882078 AT--TCAACTCTTATTGTGGAGGTAGTTA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1817506 29 -   1987038 ATAATCAACTCTTATTGTGGAGGTAGTTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068548 29 -  24206276 ATAATCAACTCTTATTGTGGAGGTAGTTA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012112253v1      7477274 29 -   9444221 ATGATCAACTCTTATTGTAGAGGTAGTTA
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             513442 29 -   3282555 ATCCTCAATTCTTGTTGTAGAGATAGTTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       298689 29 -   1024465 ATCCTCAACTCTTATTGTAGAGATAGTTA
i cebCap1.NW_016107979v1    C 0 I 1929
s aotNan1.NW_018511953v1       744398 29 -   3745603 ATCCTCAACTCTTGTTGTAGAGATAGTTA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6768310 29 -  36342412 ACAATCAGTTCTTATTATAGAGGTAGTTA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55184065 21 + 124595110 -----CAGAACTTACAATAGAGGTGG---
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 55247 25 -  40214260 ATAATCAGCTTTTATTGTGTATTTA----
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              46990 29 -   2180720 ATAATCAGCTCTTACTGTGGAGTTGTTTA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 927499 2121 - 119751181 I
e proCoq1.NW_012149419v1       651254 1781 -   2566024 I
e manLeu1.NW_012105520v1       304964 605 -   1458659 I
e macNem1.NW_012011056v1      5357593  5 -   6271500 I

a score=87775.000000
s hg38.chr15_KI270850v1_alt    196710 12 +    430880 TGTTATTACTTT
s panTro5.chr15              18006390 12 -  83230942 TGTTATTACTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232656 12 -  99763055 TGTTATTACTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295314 12 +    378907 TGTTATTACTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150857 12 + 121039945 TGTTATTACTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361820 12 + 169600520 TGTTATTACTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348911 12 - 171882078 TGTTATTACTTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1817535 12 -   1987038 TGTTATTACTTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068577 12 -  24206276 TGTTATTACTTT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012112253v1      7477303 12 -   9444221 TGTTATTACTTT
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             513471 12 -   3282555 GCTTATTACCTT
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       744427 12 -   3745603 GCTTATTACCTT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6768339 12 -  36342412 TGGTATTATTTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55184086  9 + 124595110 ---TATTCTTTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 55272 12 -  40214260 TGATATAACTTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              47019 12 -   2180720 TGGtattttttt
i dasNov3.JH569975          C 0 I 6186
e micMur3.chr3                 927499 2121 - 119751181 I
e proCoq1.NW_012149419v1       651254 1781 -   2566024 I
e cebCap1.NW_016107979v1       298718 1929 -   1024465 I
e manLeu1.NW_012105520v1       304964 605 -   1458659 I
e macNem1.NW_012011056v1      5357593  5 -   6271500 I

a score=67954.000000
s hg38.chr15_KI270850v1_alt    196722 11 +    430880 AAAAATATATA
s panTro5.chr15              18006402 11 -  83230942 TAAAATATATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232668 11 -  99763055 TAAAATATATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295326 11 +    378907 TAAAATATATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150869 11 + 121039945 AAAAATATATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361832 11 + 169600520 AAAAATATATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348923 11 - 171882078 TGAAATATATA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1817547 11 -   1987038 AAAAATATATA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068589 11 -  24206276 TGAAATATATA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012112253v1      7477315 11 -   9444221 AAAAATATATA
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             513483 11 -   3282555 TAAAGTATGTA
i saiBol1.JH378276          C 0 I 1701
s aotNan1.NW_018511953v1       744439 11 -   3745603 TAAAATATGTA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6768351 11 -  36342412 TGAAATAGGTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55184095 11 + 124595110 TAAAATTGGTA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 55284 11 -  40214260 AAAAATAGGTG
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 927499 2121 - 119751181 I
e proCoq1.NW_012149419v1       651254 1781 -   2566024 I
e dasNov3.JH569975              47031 6186 -   2180720 I
e cebCap1.NW_016107979v1       298718 1929 -   1024465 I
e manLeu1.NW_012105520v1       304964 605 -   1458659 I
e macNem1.NW_012011056v1      5357593  5 -   6271500 I

a score=29784.000000
s hg38.chr15_KI270850v1_alt    196733 3 +    430880 ggt
s panTro5.chr15              18006413 3 -  83230942 ggt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232679 3 -  99763055 ggt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295337 3 +    378907 ggt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150880 3 + 121039945 ggt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361843 3 + 169600520 ggt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348934 3 - 171882078 GAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1817558 3 -   1987038 ggt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068600 3 -  24206276 GAT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012112253v1      7477326 3 -   9444221 ggt
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018078 3 + 132174527 ggt
i calJac3.chr10             N 0 C 0
s saiBol1.JH378276             515195 3 -   3282555 ggt
i saiBol1.JH378276          I 1701 C 0
s aotNan1.NW_018511953v1       744450 3 -   3745603 GGT
i aotNan1.NW_018511953v1    C 0 I 1919
s otoGar3.GL873530            6768362 3 -  36342412 GGT
i otoGar3.GL873530          C 0 I 1360
s mm10.chr9                  55184106 3 + 124595110 GAT
i mm10.chr9                 C 0 I 1162
s canFam3.chr30                 55295 3 -  40214260 GGT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 927499 2121 - 119751181 I
e proCoq1.NW_012149419v1       651254 1781 -   2566024 I
e dasNov3.JH569975              47031 6186 -   2180720 I
e cebCap1.NW_016107979v1       298718 1929 -   1024465 I
e manLeu1.NW_012105520v1       304964 605 -   1458659 I
e macNem1.NW_012011056v1      5357593 5 -   6271500 I

a score=25472.000000
s hg38.chr15_KI270850v1_alt    196736 5 +    430880 ggagt
s panTro5.chr15              18006416 5 -  83230942 ggagt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232682 5 -  99763055 ggagt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295340 5 +    378907 ggagt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150883 5 + 121039945 ggagt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361846 5 + 169600520 ggagt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348937 5 - 171882078 AGAAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1817561 5 -   1987038 ggagt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068603 5 -  24206276 AGAAT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012112253v1      7477329 5 -   9444221 gtagt
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018081 5 + 132174527 ggagt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             515198 5 -   3282555 ggagt
i saiBol1.JH378276          C 0 C 0
s canFam3.chr30                 55298 5 -  40214260 TAAGT
i canFam3.chr30             C 0 I 1479
e micMur3.chr3                 927499 2121 - 119751181 I
e proCoq1.NW_012149419v1       651254 1781 -   2566024 I
e aotNan1.NW_018511953v1       744453 1919 -   3745603 I
e mm10.chr9                  55184109 1162 + 124595110 I
e dasNov3.JH569975              47031 6186 -   2180720 I
e cebCap1.NW_016107979v1       298718 1929 -   1024465 I
e otoGar3.GL873530            6768365 1360 -  36342412 I
e manLeu1.NW_012105520v1       304964 605 -   1458659 I
e macNem1.NW_012011056v1      5357593 5 -   6271500 I

a score=705890.000000
s hg38.chr15_KI270850v1_alt    196741 179 +    430880 acacctgttgtcctagctactagaggtggtgggaagctgaggcaggaagatcttttgagcttggggaagtcaaggctgcagtgagctgtgattgcaccattatattccagcctgggtgacagagtgaga---caccctgtatcat---aaaacaaaaaCA--AGGGGGAGTGGAGGGTGGGATACAT
s panTro5.chr15              18006421 178 -  83230942 acacttatagtcccagctactag-ggtggtaggagactgaggcaggaagatcttttgagcttggaaaagtcaaggctgcaatgagccgtgattgcaccattatattccagcctgggtgacagagtgaga---caccctgtgtcat---aaaacaaaaaaa--aGGGAGAGTGGGAGGTGGGatacat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232687 178 -  99763055 acacttatagtcccagctactag-ggtggtaggagactgaggcaggaagatcttttgagcttggaaaagtcaaggctgcaatgagccgtgattgcaccattatattccagcctgggtgacagagtgaga---caccctgtgtcat---aaaacaaaaaaa--aGGGAGAGTGGGAGGTGGGatacat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295345 179 +    378907 acacctgttgtcccagctactagaggtggtgggaagctgaggcaggaagatcttttgagcttggggaagtcaaggctgcagtgagctgtgattgcaccattatattccagcctgggtgacagagtgaga---caccctgtatcat---aaaacaaaaaCA--AGGGGGAGTGGAGAGTGGGATACAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102150888 179 + 121039945 acacctgttgtcccagctactagaggtggtgggaggctgaggcaggaagatctttcgagcttggggaagtcaaggctgcaatgagctgtgattgcaccgttaaattccagcctgggtgacagagtgaga---caccctgtatcat---aaaacaaaaaCA--AGGGGGAGTGGAGGGTGGGATACAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60361851 176 + 169600520 acacctgtagtcccagctaccaggggtggtgggaggctgaggcaggaagatcttttgagcttggagaagtcaaggctacaaagagctgtgattgcaccattatattccagcctgggtgacagagtgaga---cagcctgtctctt-----aaaaaaaaaa--GGGGGTATTTGGGG-TAGGATTCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107348942 184 - 171882078 Acacctgtagtcccagctatgaggggtggtgggaggctgaggcaggaagatcttttgagctaggagaagtcaaggctgcaatgaactgtgattgcactattatattccagcctgggtggcactattatattccag-ctgtctcataaaacaaaaaaaaaa--GAGGGGAGTAGGGGTTGGGATACAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1817566 175 -   1987038 acacctgtagtcccagctaccaggggtggtgggaggctgaggcaggaagatcttttgagcttggagaagtcaaggctgcaaagagctgtgattgcaccattatattccagcctgggtgacagagtgaga---cagcctgtctctt------aaaaaaaaa--GGGGGTATTTGGGG-TAGGATTCAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068608 182 -  24206276 Acacctgtagtcccagctatgaggggttgtgggaggctgaggtaggaagatcttttgagctaggagaagtcaaggctgcaatgaactgtgattgcaccatcatattccagcctgggtggcactattatattccag-ctgtctcat--aaaacaaaaaaaa--gaGGGGAGTGGGGGTTGGGATACAT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012112253v1      7477334 183 -   9444221 acacttgtagtcccagccact-ggggtggtgggaggctgaggcaagaagatcttttgagcttggagaggtcaaggctgcaatgagctgtgattgcaccattatattccagtgtgggtgacagagcgagg---caccctgtctcttaaaacaaaacaaaaaGTGGGGGAAGTGAGGGGTGGGCATCAT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018086 163 + 132174527 acacctgtagccccagctactggggatggtgggaggctgaggcaggaagatcttgtgctct---ggaagtcaagaatgcggtgag-----------ccactatatttcagcctgggtgacgtagcgaga---caccacatctctt---aaaaaaaaaaaa--aGTTGCGG--GGAGGTGGGATTCAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             515203 163 -   3282555 ataccggtagtcttagctattgggggtggtgggaggctgaggcaggaagatcttgtgctct---agaagtcaagactgcagtgag-----------ccactgtatttcatcctggatgacatagtgaaa---taccacaactctt---taaaaaaaaaaa--aGTTGTGG--GGAGGTGGGATCCAA
i saiBol1.JH378276          C 0 C 0
e micMur3.chr3                 927499 2121 - 119751181 I
e proCoq1.NW_012149419v1       651254 1781 -   2566024 I
e aotNan1.NW_018511953v1       744453 1919 -   3745603 I
e mm10.chr9                  55184109 1162 + 124595110 I
e dasNov3.JH569975              47031 6186 -   2180720 I
e canFam3.chr30                 55303 1479 -  40214260 I
e cebCap1.NW_016107979v1       298718 1929 -   1024465 I
e otoGar3.GL873530            6768365 1360 -  36342412 I
e manLeu1.NW_012105520v1       304964 605 -   1458659 I
e macNem1.NW_012011056v1      5357593   5 -   6271500 I

a score=23559.000000
s hg38.chr15_KI270850v1_alt    196920 8 +    430880 A-TTGTATA
s panTro5.chr15              18006599 9 -  83230942 atttatata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232865 9 -  99763055 atttatata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295524 8 +    378907 A-TTGTATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151067 8 + 121039945 A-TTGTATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362027 8 + 169600520 A-TTGGACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107349126 8 - 171882078 A-TTGGATA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1817741 8 -   1987038 A-TTGGACA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068790 8 -  24206276 A-TTGGATA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012112253v1      7477517 8 -   9444221 A-TTGTACG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018249 8 + 132174527 A-TTGGCCA
i calJac3.chr10             C 0 I 9
s saiBol1.JH378276             515366 8 -   3282555 A-TTGGCCA
i saiBol1.JH378276          C 0 I 9
s otoGar3.GL873530            6769725 8 -  36342412 a-ttgtatt
i otoGar3.GL873530          I 1360 I 4
e micMur3.chr3                 927499 2121 - 119751181 I
e proCoq1.NW_012149419v1       651254 1781 -   2566024 I
e aotNan1.NW_018511953v1       744453 1919 -   3745603 I
e mm10.chr9                  55184109 1162 + 124595110 I
e dasNov3.JH569975              47031 6186 -   2180720 I
e canFam3.chr30                 55303 1479 -  40214260 I
e cebCap1.NW_016107979v1       298718 1929 -   1024465 I
e manLeu1.NW_012105520v1       304964 605 -   1458659 I
e macNem1.NW_012011056v1      5357593 5 -   6271500 I

a score=4982.000000
s hg38.chr15_KI270850v1_alt    196928 1 +    430880 T
s panTro5.chr15              18006608 1 -  83230942 t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232874 1 -  99763055 t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295532 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151075 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362035 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107349134 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1817749 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068798 1 -  24206276 T
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012112253v1      7477525 1 -   9444221 T
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018266 1 + 132174527 T
i calJac3.chr10             I 9 C 0
s saiBol1.JH378276             515383 1 -   3282555 C
i saiBol1.JH378276          I 9 C 0
s cebCap1.NW_016107979v1       300647 1 -   1024465 T
i cebCap1.NW_016107979v1    I 1929 C 0
s otoGar3.GL873530            6769737 1 -  36342412 a
i otoGar3.GL873530          I 4 C 0
s canFam3.chr30                 56782 1 -  40214260 T
i canFam3.chr30             I 1479 C 0
e micMur3.chr3                 927499 2121 - 119751181 I
e proCoq1.NW_012149419v1       651254 1781 -   2566024 I
e aotNan1.NW_018511953v1       744453 1919 -   3745603 I
e mm10.chr9                  55184109 1162 + 124595110 I
e dasNov3.JH569975              47031 6186 -   2180720 I
e manLeu1.NW_012105520v1       304964 605 -   1458659 I
e macNem1.NW_012011056v1      5357593 5 -   6271500 I

a score=8790.000000
s hg38.chr15_KI270850v1_alt    196929 1 +    430880 G
s panTro5.chr15              18006609 1 -  83230942 g
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232875 1 -  99763055 g
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295533 1 +    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151076 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362036 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107349135 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1817750 1 -   1987038 G
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068799 1 -  24206276 G
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012112253v1      7477526 1 -   9444221 G
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018267 1 + 132174527 G
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             515384 1 -   3282555 G
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       300648 1 -   1024465 G
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530            6769738 1 -  36342412 t
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55185271 1 + 124595110 G
i mm10.chr9                 I 1162 C 0
s canFam3.chr30                 56783 1 -  40214260 G
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 927499 2121 - 119751181 I
e proCoq1.NW_012149419v1       651254 1781 -   2566024 I
e aotNan1.NW_018511953v1       744453 1919 -   3745603 I
e dasNov3.JH569975              47031 6186 -   2180720 I
e manLeu1.NW_012105520v1       304964 605 -   1458659 I
e macNem1.NW_012011056v1      5357593 5 -   6271500 I

a score=244794.000000
s hg38.chr15_KI270850v1_alt    196930 31 +    430880 TATATATAGGACAGTT---------GTAGAAAAATACCGA
s panTro5.chr15              18006610 31 -  83230942 tatatataGGACAGTT---------GTAGAAAAATACCAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232876 31 -  99763055 tatatataGGACAGTT---------GTAGAAAAATACCAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295534 31 +    378907 TATATATAGGACAGTT---------GTAGAAAAATACCGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151077 31 + 121039945 TATATATAGGACAGTT---------GTAGAAAAATACCGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362037 31 + 169600520 TATATATAGGACAGTT---------ATAGAAAAATATCAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107349136 31 - 171882078 TATATATAGGACAGTT---------GTAGAAAAATACTGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1817751 31 -   1987038 TATATATAGGACAGTT---------GTAGAAAAATATCAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068800 31 -  24206276 TATATATAGGACAGTT---------GTAGAAAAATACCGA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012112253v1      7477527 31 -   9444221 TATATATAGGACAGTT---------GTAGAAAAATACTGA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018268 31 + 132174527 TATACATAAGACAGTT---------GTAGACAAATACAGA
i calJac3.chr10             C 0 I 1
s saiBol1.JH378276             515385 31 -   3282555 TATATATAGGACAGTT---------GTAGACAAACACAGA
i saiBol1.JH378276          C 0 I 2
s cebCap1.NW_016107979v1       300649 31 -   1024465 TATATATAGGACAGTT---------TTAGACAAATACAGA
i cebCap1.NW_016107979v1    C 0 I 1
s otoGar3.GL873530            6769739 40 -  36342412 tttaaatagaataattctatttaaaatagaaaaatttaga
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55185272 29 + 124595110 TACATATAGAAGAATT---------ATAGAAAAAATGT--
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 56784 31 -  40214260 CATATGTAGAACAGTT---------GTAGACAGATTTTTA
i canFam3.chr30             C 0 I 2
s dasNov3.JH569975              53217 31 -   2180720 TATGTTTAGAACTATT---------ATAGGCAGttttaaa
i dasNov3.JH569975          I 6186 C 0
e micMur3.chr3                 927499 2121 - 119751181 I
e proCoq1.NW_012149419v1       651254 1781 -   2566024 I
e aotNan1.NW_018511953v1       744453 1919 -   3745603 I
e manLeu1.NW_012105520v1       304964 605 -   1458659 I
e macNem1.NW_012011056v1      5357593  5 -   6271500 I

a score=63676.000000
s hg38.chr15_KI270850v1_alt    196961 6 +    430880 TTTTTT
s panTro5.chr15              18006641 6 -  83230942 TTTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232907 6 -  99763055 TTTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295565 6 +    378907 TTTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151108 6 + 121039945 ATTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362068 6 + 169600520 TTTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107349167 6 - 171882078 TTCTTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1817782 6 -   1987038 TTTTTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068831 6 -  24206276 TTCTTT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012112253v1      7477558 6 -   9444221 TTTTTT
i colAng1.NW_012112253v1    C 0 I 311
s calJac3.chr10              18018300 6 + 132174527 TTTTTT
i calJac3.chr10             I 1 C 0
s saiBol1.JH378276             515418 6 -   3282555 TTTTTT
i saiBol1.JH378276          I 2 C 0
s cebCap1.NW_016107979v1       300681 6 -   1024465 TTTTTT
i cebCap1.NW_016107979v1    I 1 C 0
s aotNan1.NW_018511953v1       746372 6 -   3745603 TTTTTT
i aotNan1.NW_018511953v1    I 1919 C 0
s otoGar3.GL873530            6769780 6 -  36342412 tttatt
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  55185301 6 + 124595110 TTTTAT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 56817 5 -  40214260 -TTTTT
i canFam3.chr30             I 2 I 3
s dasNov3.JH569975              53248 6 -   2180720 ttttat
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 927499 2121 - 119751181 I
e proCoq1.NW_012149419v1       651254 1781 -   2566024 I
e manLeu1.NW_012105520v1       304964 605 -   1458659 I
e macNem1.NW_012011056v1      5357593 5 -   6271500 I

a score=101269.000000
s hg38.chr15_KI270850v1_alt    196967 10 +    430880 -AGTGATTTAA
s panTro5.chr15              18006647 10 -  83230942 -GGTGATTTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232913 10 -  99763055 -GGTGATTTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295571 10 +    378907 -AGTGATTTAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151114 10 + 121039945 -AGTGATTTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362074 10 + 169600520 -AGTGATTTAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107349173 10 - 171882078 -AGTGATTTAA
i macFas5.chr7              C 0 I 307
s cerAty1.NW_012002657v1      1817788 10 -   1987038 -AGTGATTTAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21068837 10 -  24206276 -AGTGATTTAA
i chlSab2.chr29             C 0 I 308
s colAng1.NW_012112253v1      7477875 10 -   9444221 -AGTGATTTAA
i colAng1.NW_012112253v1    I 311 C 0
s calJac3.chr10              18018306 10 + 132174527 -AGTGATTTAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             515424 10 -   3282555 -AGTGATTTAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       300687 10 -   1024465 -AGTGATTTAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       746378 10 -   3745603 -AGTGATTTAA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6769786 10 -  36342412 -aGTGATTTAA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55185307  9 + 124595110 -AGTGATTTA-
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 56825  9 -  40214260 -AATGATTTC-
i canFam3.chr30             I 3 C 0
s dasNov3.JH569975              53254 11 -   2180720 aaattatttGC
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 927499 2121 - 119751181 I
e proCoq1.NW_012149419v1       651254 1781 -   2566024 I
e manLeu1.NW_012105520v1       304964 605 -   1458659 I
e macNem1.NW_012011056v1      5357593  5 -   6271500 I

a score=105241.000000
s hg38.chr15_KI270850v1_alt    196977 15 +    430880 C--TTTTGACGGTTCCG
s panTro5.chr15              18006657 17 -  83230942 CTTTTTTGACAGCTCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232923 17 -  99763055 CTTTTTTGACAGCTCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295581 15 +    378907 C--TTTTGACAGTTCCG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151124 15 + 121039945 C--TTTTGACGGTTCCG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362084 15 + 169600520 --CTTTTGATAGTTCCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107349490 15 - 171882078 --CTTTTGACAGTTCTG
i macFas5.chr7              I 307 C 0
s cerAty1.NW_012002657v1      1817798 15 -   1987038 --CTTTTGATAGTTCCG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21069155 15 -  24206276 --CTTTTGACAGTTCTG
i chlSab2.chr29             I 308 C 0
s manLeu1.NW_012105520v1       305569 15 -   1458659 --CTTTTGACAGTTCTG
i manLeu1.NW_012105520v1    I 605 C 0
s colAng1.NW_012112253v1      7477885 15 -   9444221 --CTTTTCATAGTCCCA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018316 15 + 132174527 --CTTTTCATAGTTCCA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             515434 15 -   3282555 --CTTTTCGTAGTCCCA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       300697 15 -   1024465 --CTTTTCATAGTTCCA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       746388 15 -   3745603 --CTTTTCATAGTTCCA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6769796 15 -  36342412 --CTTTTTGTTGTCTTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55185316 15 + 124595110 --CTTTTGGTGGTATTA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 56834 15 -  40214260 --CTTTTTCTGGTCCTG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              53265 16 -   2180720 -CATTTTTATGGTCTTG
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 927499 2121 - 119751181 I
e proCoq1.NW_012149419v1       651254 1781 -   2566024 I
e macNem1.NW_012011056v1      5357593  5 -   6271500 I

a score=33801.000000
s hg38.chr15_KI270850v1_alt    196992 2 +    430880 TC
s panTro5.chr15              18006674 2 -  83230942 TC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232940 2 -  99763055 TC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295596 2 +    378907 TC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151139 2 + 121039945 TC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362099 2 + 169600520 TC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107349505 2 - 171882078 TC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1817813 2 -   1987038 TC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21069170 2 -  24206276 TC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       305584 2 -   1458659 TC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7477900 2 -   9444221 TC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018331 2 + 132174527 TC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             515449 2 -   3282555 TC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       300712 2 -   1024465 TC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       746403 2 -   3745603 TC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 929620 2 - 119751181 TC
i micMur3.chr3              I 2121 C 0
s otoGar3.GL873530            6769811 2 -  36342412 TC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55185331 2 + 124595110 TT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 56849 2 -  40214260 TC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              53281 2 -   2180720 TC
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       651254 1781 -   2566024 I
e macNem1.NW_012011056v1      5357593 5 -   6271500 I

a score=3339421.000000
s hg38.chr15_KI270850v1_alt    196994 288 +    430880 CATGGCAAA-------TTTTTCTCCTTGAACACCTTGGCTAATAATACAAGTTTAGGAAAGCA---TATTAAAC---TGTGTTTGAATTC------------------------TTGAG-AAAATTATATACATATGACT--GTTTTCCTTTAGAATGACTCCAAACTCTGAACCCCCTTATTAGATTAGA-TTTA-GGGTATTGT-----GATCCCTTTGGGACATTTATTCTAAAGGAGCTGGAAA--CTATAGTGGC-------CTCTATTTTTCCTGGGG--AT-ATAGAGCAGCTTAAGATCTCCTCTTTCTGGAACTT-ATCCTAGGTGCTCTATTTTAGCT
s panTro5.chr15              18006676 288 -  83230942 CATGGCAAA-------TTTTTCTCCTTGAACAACTCGGCTAGTAATACAAGTTTAGGAAAGCA---TATTAAAC---TTTTTTTGAATTC------------------------TTGAG-AAAATTATATACATGCGACT--GTTTTCCTTTAGAATGACTGCAAACTCTGAACCCCCTTATTAGATTAGA-TTTA-GGCTATTAT-----AATCTCTTTGGGACATTTATTCTAAAGGAGCTGGAAG--CTATAGTGGC-------CTCTAGTTTTCCTGGGG--AT-ATAAAGCAGCTTAAGGTCTCCTCTTTCCGGAAATT-ACCCTAGGTGCTGTATTTTAGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17232942 288 -  99763055 CATGGCAAA-------TTTTTCTCCTTGAACAACTCGACTAGTAATACAAGTTTAGGAAAGCA---TATTAAAC---TTTTTTTGAATTC------------------------TTGAG-AAAATTATATACATGCGACT--GTTTTCCTTTAGAATGACTGCAAACTCTGAACCCCCTTATTAGATTAGA-TTTA-GGCTATTAT-----AATCTCTTTGGGACATTTATTCTAAAGGAGCTGGAAG--CTATAGTGGC-------CTCTAGTTTTCCTGGGG--AT-ATAAAGCAGCTTAAGGTCTCCTCTTTCCGGAAATT-ACCCTAGGTGCTGTATTTTAGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295598 288 +    378907 CATGGCAAA-------TTTTTCTCCTTGAACACCTTGGCTAATAATACAAGTTTAGGAAAGCA---TATTAAAC---TGTGTTTGAATTC------------------------TTGAG-AAAATTATATACATATGACT--GTTTTCCTTTAGAATTACTCCAAACTCTGAACCCCCTTATTAGATTAGA-TTTA-GGGTATTGT-----GATCCCTTTGGGACATTTATTCTAAAGGAGCTGGAAG--CTATAGTGGC-------CTCTGTTTTTCCTGGGG--AT-ATAGAGCAGCTTAAGATCTCCTCTTTCTGGAACTT-ATCCTAGGTGCCCTATTTTAGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151141 288 + 121039945 CATGGCAAA-------TTTTTCTCCTTGAACACCTTGGCTAATAATACAAGTTTAAGAAAGCA---TATTAAAC---TTTGTTTGAATTC------------------------TTGAG-AAAATTATATACATATGACT--GTTTTCCTTAAGAATGACTGCAAACTCTGAACCCCCTTATTAGATTAGA-TTTA-GGGTATTAT-----GATCCCTTTGGGACATTTATTCTAAAGGAGCTGGAAG--CTATAGTGGC-------CTCTATTTTTCCTGGGG--AT-ATAGAGCAGCTTAAGATCTCCTCTTTCTGGAACTT-ATCCTAGGTGCTCTATTTTAGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362101 295 + 169600520 CATGGCAAATGTTTACTTTTTCTCCTTGAACATCTTGGCTTATAATACAAGTTTAGGAAAGCA---TAGTAAAC---TTTTTTTGAATTC------------------------TTGAG-AACATTATATACATGTGACT--ATTTTCCTTTAGAATGACTGCAAACTCTGAACCCCCTTATTAGATTAGA-TTTA-GGCTATTAT-----GATCTCTTTGGGACATTTATTCTAAAGGAGCTTGAAG--CTATAATGGC-------CTCTATTTTTCCTGGGG--AT-ATACAGCAGCTTAAGATCTTCTCTTTCTGGAACTT-ACCCTAGGTGCTCTATTTTAACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107349507 288 - 171882078 CATGGCAAA-------TTTTTCTCCTTAAACACACTGGCTAATAACACAAGTTTAGGAAAGCA---TAGCAAAC---TTTTTTTGAATTC------------------------TTGAG-AACATTATATACATGTGACT--TTTTTCCTTTAGAATGACTACAAACTCTGAACCCCCTTATTAGATTAGA-TTTA-GGCTATTAT-----GATCTCTTTGGGATACTTATCCTAAAGGAGCTGGAAG--CTATAGTGGC-------CTCTATTCTTCCTGGGG--AT-ATAGAGAAGCTTAAGATCTCCTCTTTCTGGAACTT-ACCCTGGGTGCTCTATTTTAGCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1817815 288 -   1987038 CACGGCAAA-------TTTTTCTCCTTGAACATCTTGGCTTATAATACAAGTTTAGGAAAGCA---TAGTAAAC---TTTTTTTGAATTC------------------------TTGAG-AACATTATATACATGTGACT--ATTTTCCTTTAGAATGACTGCAAACTTTGAACCCCCTTATTAGATTAGA-TTTA-GACTATTAT-----GATCTCTTTGGGACATTTATTCTAAAGGAGCTCGAAG--CTATAATGGC-------CTCTATTTTTCCTGGGG--AT-ATACAGCAGCTTAAGATCTTCTCTTTCTGGAACTT-ACCCTAGGTGCTCTATTTTAACT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21069172 291 -  24206276 CATGGCAAA-------TTTTTCTCCTTAAACACACTGGCTAATAACACAAGTTTAGGAAAACA---TAGCAAACTTTTTTTTTTGAATTC------------------------TTGAG-AAAATTATATACATGTGACT--GTTTTCCTTTAGAATGACTACAAACTCTGAACCCCCTTATTAGATTAGA-TTTA-GGCTACTAT-----GATCTTTTTGGGACACTTATCCTAAAGGAGCTGGAAG--CTATAGCGGC-------CTCTATTCTTCCTGGGG--AT-ATAGAGCAGCTGAAGATCTCCTCTTTCTGGAACTT-ACCCTGGGTGCTCTATTTTAGCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       305586 288 -   1458659 CATGGCAAA-------TTTTTCTCCTTAAACACACTGGCTAATAACACAAGTTTAGGAAAGCA---TAGCAAAC---TTTTTTTGAATTC------------------------TTGAG-AACATTATATACATGTGACT--GTTTTCCTTTAGAATGACTGCAAACTCTGAACCCCCTTATTAGATTAGA-TTTA-GGCTATTAT-----GATCTCTTTGGGACACTTATCCTAAAGGAGCTGGAAG--CTATAGTGGC-------CTCTATTCTTCCTGGGG--AT-ATAGAGCAGCTGAAGATCTCCTCTTTCTGGAACTT-ACCCTGGGTGCTCTATTTTAGCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7477902 285 -   9444221 CATGGGAAA-------TTGTTCTCCTTGAATCCCTTGGCTAATAATACAAGTCTAGGAAAGCA---TATTAAAC---TTCTTTTAAATTC------------------------TTGAG-AAAATTATATACATGTGACT--GTTTTCCTTTAGAATGACTGCAAACTCTGAACGCCCTTATTAGATTAGA-TTTA-GGCTATTAT-----GATCTCTTTTGGACATTTATTCTAAAGGAGCGGGAAG--CTATAATGAC-------CTCTA---TTCCTGGGG--AT-ATAGAGCAGCTTAAGATCTTCTCTTTCTGGATTTT-ACCCTAGGTGCTCTATTTTAGCT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018333 287 + 132174527 CATGGCAAA-------TTTTCCTTTTTGAAACCCTTGGCTAACAATACAAGTTTAGGAAAGCA---TATTAAAC---TTTTTTTGAGTTC------------------------TTGAG-AAAATTATATACAGGTGAC----TTTTCTTTTAGAGCGACTACAAACTCTAAAACCCCTTACTAGATTAGATTTTA-GAGTATTAT-----GGTCTATTTTGGACATTTATTCCCAAGGAGCTGGGAG--CTATAGTGAC-------CTCTATTTTTCCTGGTG--AT-ATAGAGCACCTTTAGA-CTTCTCTTTCTGGAACTTAATCCTAGGTACTCTATTTTAGCT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             515451 284 -   3282555 CATGGCAGA-------TTTT-CTACTTGAACCCCTTGGCTAACAATACAAGTGTAGGAAGGCA---TATTAAAC---TTTTTTTGAGTTC------------------------TTGAG-AAAATTATATGCATGTGAC----TTTTCTTTTAGAGTGACT--GAACTCTAAAACCCCTTATTAGATTAGA-TTTA-GAGTATTAT-----GGTCTCTTTTGGACATTTATTCCCAAGGAGCTGGGAA--CTATAATGAC-------CTCTGTTTTTCCTGGTG--ATAATGGAGCACCTTCAGACCTTCTCTTTCTGGAACTT-ACCCTAGGTGCTCTATTTTAGCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       300714 286 -   1024465 CATGGCAAA-------TTTTTCTCCTTGAACCCCTTGGCTAACAATACAAGTTTAGGAAGGCA---TAGTAAGC---TTTTTTTGAGTTC------------------------TTGAG-AAAATTATATACATGTGAC----TTTTCTTTTAGAGTAACTGCAAACTCTAAAACCCCTTACTAGATTAGT-TGTA-GAGTATTAT-----GGTATCTTTTGGACATTTATTCCCAAGGAGCTGGGAG--CTATAGTGAC-------CTCTATTTTATCTGGTG--AT-ATAGGGTACCTTTAGACCTTCTCTCTCTGGAACTT-ACCCTAGGTGCTCTATTTTAGCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       746405 286 -   3745603 CATGGCAAA-------TTTTTCTCCTTGAACCCCTTGGCTAACAATACAAGTTTAGGAAAGCA---TATTAAAC---TTTTTTTGAGTTC------------------------TTGAG-AAAATTATATACATGTGAC----TTTTCTTTTAGAGTGACTGCAAACTCTAAAACCCCTTATTAGATTAGA-TTTA-GAGTATTAT-----GGTCTCTTTTGGACATTTATTCCCAAGGAGCTGGGAG--CTGTAGTGAC-------CTCTATTTTTCCTGGTG--AT-ATAGAGCACCTTTAGACCTTCTCTTTCTGGAACTT-ACCCTAGGTGCTCTATTTTAGCT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 929622 279 - 119751181 CATGGCAAA-------TTTCTTTCCTCGAACTCCTTGGCTAATAATACAAGTTTAGGAAAGCA---TATTAAAA---TTTTTTTGAGTTC------------------------TTGAG-AAAATTATTTACATATAACT--GTTTTCTTTTAGAATGACTACTAGCCTTGATTCCCCTTATTAGAATAGA-TTTT-GAGTACTACTGTATGATC--TTTTGGACATTTATTCCCAAGGAGCTGGAGG---------------------CTATTTTTCCTTGGG--CT-GTAGAGCAGCTTTAGACCGTCTCTGTCTGGAACTT-ATCTTAGGGGCTCTGTTTTAGCT
i micMur3.chr3              C 0 I 44
s proCoq1.NW_012149419v1       653035 285 -   2566024 CATAGCAAA-------TTTCTTTCCTTGAACTCCTTGGCTAATAGTACAAGTTTAGGAAAGCA---TATTAAAA--TTTTTTTTGAGTTC------------------------TTGAG-AAAATTATATACATATGACT--GTTTTCTTTTAGAATGACTGCTAGCTTTGGTCCCCCTTATTAGAATAGA-TTTA-GAGTACTATTATATGATC--TTTTGGACATTTATTCCCAAGGAGCTGGAGG--CCATAGTGAC---------CTATTTTTCCTGGGG--CT-GTAGAGCAGCTTTAGACCTTCTCTGCCTGGAA------CTTAGGGGCTCTGTTTTAGCT
i proCoq1.NW_012149419v1    I 1781 C 0
s otoGar3.GL873530            6769813 268 -  36342412 CATAGCATA-------TTTCACTCCTTGAACTCCTTTGCTAATAATACAAATTTAGGAAAGCA---TATTAAAA--ATTTTTTTGAGTTC------------------------TTGAGAAAAATTATATACACATGATT--GGTTTATTTTAGAATGACTGCTAACTTTGATCCCAC-TGTTAAAATAGA-TTTA-CAGTACTGA-----GATC--TTTTGCACATTTATTCCCAAGGAGCTGGAGG--CCGTA--GAC---------CTGTTTTTCCTGGGG--TG-GTAGAGAAGCTGTACACCTT----------AA------CCTAGGGACTCTGTTTTAGCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55185333 256 + 124595110 GGCGGTAAA-------TTTCTTTTCTTAAACTTCTTGGTTAAAAATATAATTTTAGGAAAGGAAAGCATCAAAA---TGTTTTTCAGTTG------------------------TTTGA-AAAGTTATGTGTATCTAACT--GTTGTTCTTTGGAATGACC------------------------ATTAAT-TTCA---------------GATTTCCTTTG--------TTCCCAAGGAGCTAGAGAGCCCATAGTGACACCCCCCACCCACCCCACCCCGGA--CT-GTGGCACA-CTTTAGAACTTCTGTTT--AGAACTT-ACCTTGGAGGCTCTGTTGCCCCT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 56851 270 -  40214260 CGTGATAAA-------TTTCGCTCCTTGAGCCCCTTGGCTTATAATACAGTTTTAGAAGAGCA---AAATA------ATTTTTTGAGTTC------------------------TGGAG-AAAATT---TATGTACTATG--ATTTTCCTTTAGAATGACTGCTAACTTTGAATCCCCTCATGGGCATGGA-TTTAAAAATACAGT-----GATCT-TCTTGGACATTGAATCCCAAGGAGTCAGAGG--CTATTGTGAT---------TTATTTTTCCAGGGACCAT-ATACAGCAGTTTTA---------TGTTTGAAACTT-ACCC-AGGGGCTCTGTT--AGCT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              53283 262 -   2180720 TGTGGTAAA-------TTAATTTTCTTAATCCCCCTGGCTAATAATACAATTTTAGGGAGGCA---GATTAAAA-GTTTTTTTTGAGTCCTAGGCATTGTATTAGGTCTACTATTTGAG-AAAATTGTGTGCATATGACCTGATTTCTTTTTAGTA----CACTAACTTTGAATGTCCTTGTGAGAATAGA-TTTA-GAGTACTGT-----GATCT-TTTTGAATATTTATTCCCAAGTAGCTGGGTG--CTATAGTTAC--------TTTACTCATCTAGAGG--AC--------------------------------------------------TGTTTTAGCT
i dasNov3.JH569975          C 0 C 0
e macNem1.NW_012011056v1      5357593   5 -   6271500 I

a score=304489.000000
s hg38.chr15_KI270850v1_alt    197282 24 +    430880 TTCAGATTGGTTCATTTTTGAGTT
s panTro5.chr15              18006964 24 -  83230942 TTCAGATTGGTTCATTTTTGAGTt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17233230 24 -  99763055 TTCAGATTGGTTCATTTTTGAGTt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295886 24 +    378907 TTCAGATTGGTTCATTTTTGAGTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151429 24 + 121039945 TTCAGATTGGTTCATTTTTGAGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362396 24 + 169600520 TTCAGATTGGTTCATTTTTGAGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107349795 24 - 171882078 TTCAGATTGGTTCATTTTTGACTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1818103 24 -   1987038 TTCAGATTGGTTCATTTTTGAGTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21069463 24 -  24206276 TTCAGATTGGTTCATTTTTGACTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       305874 24 -   1458659 TTCAGATTGGTTCATTTTTGACTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7478187 24 -   9444221 TTCAGATTGGTTCATTTTTGAGTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018620 24 + 132174527 GTCAGACTAGTTCATTTCTGAGTT
i calJac3.chr10             C 0 I 1
s saiBol1.JH378276             515735 24 -   3282555 GTCAGACTAGTTCATTTCTGAGTT
i saiBol1.JH378276          C 0 I 1
s cebCap1.NW_016107979v1       301000 24 -   1024465 GTCAGGCTAGCTCATTTCTGAGTT
i cebCap1.NW_016107979v1    C 0 I 1
s aotNan1.NW_018511953v1       746691 24 -   3745603 GTCAGACTAGTTCATTTCTGAGTT
i aotNan1.NW_018511953v1    C 0 I 1
s proCoq1.NW_012149419v1       653320 24 -   2566024 CTTGGACTGGTTCATTTTTGAGTT
i proCoq1.NW_012149419v1    C 0 I 20
s otoGar3.GL873530            6770081 24 -  36342412 CTTTGATTGGTTCATTTTTGAGTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55185589 24 + 124595110 TTTGGACTGGTTCAGTTGGAGCTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 57121 24 -  40214260 CTTGAACTGGTTCATTTTTGTGGT
i canFam3.chr30             C 0 I 1
s dasNov3.JH569975              53545 24 -   2180720 CTTGAATTAGTTTATTTTTGAGGT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 929901 44 - 119751181 I
e macNem1.NW_012011056v1      5357593  5 -   6271500 I

a score=16024.000000
s hg38.chr15_KI270850v1_alt    197306 8 +    430880 AGTtaaaa
s panTro5.chr15              18006988 8 -  83230942 agtaaaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17233254 8 -  99763055 agtaaaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295910 8 +    378907 AGTTAAaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151453 8 + 121039945 AGTTAAAa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362420 6 + 169600520 AGTAAA--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107349819 6 - 171882078 AGTAAA--
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1818127 6 -   1987038 AGTAAA--
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21069487 6 -  24206276 AGTAAA--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       305898 8 -   1458659 AGCaaaaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7478211 6 -   9444221 AGTTGA--
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018645 8 + 132174527 AGTTAAAA
i calJac3.chr10             I 1 C 0
s saiBol1.JH378276             515760 8 -   3282555 AGTTAACA
i saiBol1.JH378276          I 1 C 0
s cebCap1.NW_016107979v1       301025 8 -   1024465 AGTTAAAA
i cebCap1.NW_016107979v1    I 1 C 0
s aotNan1.NW_018511953v1       746716 8 -   3745603 AGTTAAGA
i aotNan1.NW_018511953v1    I 1 I 26
s mm10.chr9                  55185613 8 + 124595110 AGTAAGAA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 57146 7 -  40214260 AGTAAGA-
i canFam3.chr30             I 1 C 0
s dasNov3.JH569975              53569 3 -   2180720 TGT-----
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 929901 44 - 119751181 I
e proCoq1.NW_012149419v1       653344 20 -   2566024 I
e otoGar3.GL873530            6770105 0 -  36342412 C
e macNem1.NW_012011056v1      5357593 5 -   6271500 I

a score=-46856.000000
s hg38.chr15_KI270850v1_alt    197314 19 +    430880 taat---------aataataataataat
s panTro5.chr15              18006996 22 -  83230942 taat------acaaataataataataat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17233262 22 -  99763055 taat------acaaataataataataat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295918 28 +    378907 taataataataataataataataataat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151461 22 + 121039945 tcat------catcatcatcatcatcat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362426 12 + 169600520 ----------------AATAAAAAATCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107349825 12 - 171882078 ----------------AATAATAATAAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1818133 12 -   1987038 ----------------AATAAAAAATCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21069493 12 -  24206276 ----------------AATAATAATAAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       305906 19 -   1458659 taat---------aataataataataat
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7478217 12 -   9444221 ----------------AAAAAAAATTCT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018653  9 + 132174527 -------------------AATCTCTAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             515768  9 -   3282555 -------------------AATCTCTAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       301033  9 -   1024465 -------------------AATCTCTAA
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530            6770105 16 -  36342412 ------------TAGTAAGAAAAATTCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55185621 13 + 124595110 ---------AGGTTTCTCTAAT------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 57153  9 -  40214260 -------------------AACCTCTCT
i canFam3.chr30             C 0 I 4
s dasNov3.JH569975              53572 15 -   2180720 -------------GATAAGAATAATTCT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 929901 44 - 119751181 I
e proCoq1.NW_012149419v1       653344 20 -   2566024 I
e aotNan1.NW_018511953v1       746724 26 -   3745603 I
e macNem1.NW_012011056v1      5357593  5 -   6271500 I

a score=27013.000000
s hg38.chr15_KI270850v1_alt    197333 2 +    430880 CT
s panTro5.chr15              18007018 2 -  83230942 CT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17233284 2 -  99763055 CT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295946 2 +    378907 CT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151483 2 + 121039945 cT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362438 2 + 169600520 Ct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107349837 2 - 171882078 CT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1818145 2 -   1987038 CT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21069505 2 -  24206276 CT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       305925 2 -   1458659 CT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7478229 2 -   9444221 CT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018662 2 + 132174527 CT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             515777 2 -   3282555 CT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       301042 2 -   1024465 CT
i cebCap1.NW_016107979v1    C 0 C 0
s micMur3.chr3                 929945 2 - 119751181 CT
i micMur3.chr3              I 44 C 0
s otoGar3.GL873530            6770121 2 -  36342412 CT
i otoGar3.GL873530          C 0 I 4
s canFam3.chr30                 57166 1 -  40214260 -T
i canFam3.chr30             I 4 C 0
s dasNov3.JH569975              53587 2 -   2180720 CT
i dasNov3.JH569975          C 0 I 4
e proCoq1.NW_012149419v1       653344 20 -   2566024 I
e aotNan1.NW_018511953v1       746724 26 -   3745603 I
e mm10.chr9                  55185634 0 + 124595110 C
e macNem1.NW_012011056v1      5357593 5 -   6271500 I

a score=185522.000000
s hg38.chr15_KI270850v1_alt    197335 14 +    430880 TTTTGTTTG-AATTG
s panTro5.chr15              18007020 14 -  83230942 TTTTGTTTG-AATTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17233286 14 -  99763055 TTTTGTTTG-AATTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295948 14 +    378907 TTTTGTTTG-AATTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151485 14 + 121039945 TTTTGTTTG-AATTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362440 14 + 169600520 ttgtatttg-aatta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107349839 14 - 171882078 TTTTATTTG-AATTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1818147 14 -   1987038 TTGTATTTG-AATTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21069507 14 -  24206276 TTTTGTTTG-AATTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       305927 14 -   1458659 TTTTGTTTG-AATTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7478231 14 -   9444221 TTTTGTTTG-AACTG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018664 14 + 132174527 TTTAATTTG-AACTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             515779 15 -   3282555 TTTTATTTGAAACTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       301044 14 -   1024465 TTTTATTTG-AACTG
i cebCap1.NW_016107979v1    C 0 C 0
s micMur3.chr3                 929947 14 - 119751181 TTTTGTTTG-AACTG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       653364 14 -   2566024 CTTTGTTTG-AACTA
i proCoq1.NW_012149419v1    I 20 C 0
s otoGar3.GL873530            6770127 14 -  36342412 TTTTGTTTA-AACTG
i otoGar3.GL873530          I 4 C 0
s mm10.chr9                  55185634 13 + 124595110 -CTTGTTTG-AACTG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 57167 14 -  40214260 TTTCATTTG-AATTG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              53593 14 -   2180720 TTTTGTTTG-AACTG
i dasNov3.JH569975          I 4 C 0
e aotNan1.NW_018511953v1       746724 26 -   3745603 I
e macNem1.NW_012011056v1      5357593  5 -   6271500 I

a score=2446976.000000
s hg38.chr15_KI270850v1_alt    197349 185 +    430880 T-TTTTTGTTTTGGAATTCTCAAGGTTGACCCTGATAGTCCTTTGCACAGTGATCTTTAGATCTT-----AAAAAGAAGCGATAGGAGACATTTTG-----CTTATCTTTCAAGGTAAGAAAATGGTTATGAGactc-tatatccttctaatgggggtgtgtatttg-taca------------------agtgttttggaaaacggt----------ttgggaaa-------
s panTro5.chr15              18007034 190 -  83230942 T-TTTTTGTTTTGGAATTCTCAAGGTTGACCCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGAGATAGGAGACATTTTG-----CTTATGTTTTAAGGTAAGAAAATTTTTATGAGactc-tatatcctatgaatgggggtatatatttg-taca------------------agtgttttggaaaacagt----------ttggtaaa-------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17233300 190 -  99763055 T-TTTTTGTTTTGGAATTCTCAAGGTTGACCCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGAGATAGGAGACATTTTG-----CTTATGTTTTAAGGTAAGAAAATTTTTATGAGactc-tatatcctatgaatgggggtatatatttg-taca------------------agtgttttggaaaacagt----------ttggtaaa-------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       295962 185 +    378907 T-TTTTTGTTTTGGAATTCTCAAGGTTGACCCTGATAGTCCTTTGCACAGTGATCTTTAGATCTT-----AAAAAGAAGAGATAGGAGACATTTTG-----CTTATCTTTCAAGGTAAGAAAATTGTTATGAGactc-tatatccttctaatgggggtgtgtatttg-taca------------------agtgttttggaaaacggt----------ttgggaaa-------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151499 185 + 121039945 T-TTTTTGTTTTGTAATTCTCAAGGTTGACCCTGATAGTCCTTTGCACAGTGATCTTTAGATATT-----AAAAAGAAGGGAGAGGAGACATTTTG-----CTTATCTTTTAAGGTAAGAAAATTGTTATGAGactc-tatatccttctagtgggggtgtatatttg-taca------------------agtgttttggaaaatagt----------ttggtaaa-------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362454 194 + 169600520 tatttttgttttgtaattCTTAGGGTTGACCCTGACAGTGCTTTGCACAGTGATCTTCAGATTGTAAAAGAAAAAGAAGGGATAGGAGACATTTTGCTCAACTTATCTTTTAAGGTAAG-AAATTGTTATgggactc-tatatcctcctaatggaggtgtatatttg-taca------------------agtg-tttggaaaacaac----------ttggtaaa-------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107349853 187 - 171882078 TTTTTTTGTTTTGTAATTCTCAAGGTTGACCCTGATAGT-CCTTGCACAGTGATCTTCAGATCTTAAAAGAAAAACAAGGGATAGGAGACATTTTG-----CTTATCTTTTAAGGTAAGAAAATTGTTGTGAGactc-tatatccttctaatg--ggtgtatatttg-taca------------------agtg-tttggaaaacagt----------ttggtaaa-------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1818161 194 -   1987038 TATTTTTGTTTTGTAATTCTTAGGGTTGACCCTGACAGTGCTTTGCACAGTGATCTTCAGATTGTAAAAGAAAAAGAAGGGATAGGAGACATTTTGCTCAACTTATCTTTTAAGGTAAG-AAATTGTTATgggactc-tatatcctcctaatggaggtgtatatttg-taca------------------agta-tttggaaaacaac----------ttggtaaa-------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21069521 187 -  24206276 TTTTTTTGTTTTGTAATTCTCAAGGTTGACCCTGATAGTCCCTTGCACAGTGATCTTCAGA-CTTAAAAGAAAAAGAAGGGATAGGAGACATTTTG-----CTTATCTTTTAAGGTAAGAAAATTGTTATGAGactc-tatatccttctaatg--ggtgtatatttc-taca------------------agtg-tttggaaaacagt----------ttggtaaa-------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       305941 188 -   1458659 CTTTTTTGTTTTGTAATTCTCAAGGTTGACCCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAGAAGAAGGGATAGGAGACATTTTG-----CTTATCTTTTAAGGTAAGAAAATTGTTATGAGactc-tatatccttctaatg--ggtgtatatttg-taca------------------agtg-tttggaaaacagt----------ttggtaaa-------
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7478245 195 -   9444221 T-TTTTTGTTTTGTGATTCTTAGGGTTGACCCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGGAGATATTTTGCTTAACTTATATTTTAAGTTAAGAAAATTGTTacaggactc-tatatttttctaatgggggtgtatatttg-taca------------------agtgttttagaaaacaat----------ttggtaaa-------
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018678 191 + 132174527 -TTTTTTGTTTCATAATTCTTAGGGTCGACCCTGATAGTCCTTTGCACAGTGATCTTCAGATCCTAAAAGAAAAAGAAGGCATAGAATATATATTGCTTAACTTCTCTTTTAAGGTAAGAGAA----TACAgaacac-catatacttccaatgggggcatatactta-taca------------------agggctttggaaaacaat----------ttggtgaa-------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             515794 195 -   3282555 -TTTTTTGTTTTTTAATTCTTAGGGTCGACCCTGATAGTCCTTTGCACAGCGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATATTGCTTAACTTCTCTTTTAAGGTAAGAAAATAGTTACAGAGCGC-catatacttccagtgggggcgtatagttg-taca------------------aaggctttggaatacaat----------ttggttag-------
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       301058 195 -   1024465 -TTTTTTGTTTTATAATTCTTAGGGTCGACCCTGATAGCCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATATTGCTTAATTTCTCTTTTAAGGTAAGAAAATAGTTACAGAAAGC-catatacttccaatggggacgtatagttg-taca------------------agggttttggaaaacaat----------ttggtgaa-------
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       746750 195 -   3745603 -TTTTTTGTTTTATAATTCTTAGGGTCGACCCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATATTGCTTAACTTCTCTTTTAAGGTAAGAAAATAGTTAcagaatcc-catatacttccaatgggggcgtatagttg-taca------------------agggctttggaaaacaat----------ttggtgaa-------
i aotNan1.NW_018511953v1    I 26 C 0
s micMur3.chr3                 929961 187 - 119751181 ------TCTTTTGTAATTCTTAGGGTTGACCCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCTTTTAAGGTAAGAAAATAGTaatgggactc-catctgcttctgatg--ggcgtgtatttg-tgc-------------------agtgctttggaaaccaat----------gtggtatt-------
i micMur3.chr3              C 0 I 10
s proCoq1.NW_012149419v1       653378 187 -   2566024 ------TGTTTTGTAATTCTTAGGGTTGACCCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCTTTTAAGGTAAGAAAATagtaatgggactc-catctgcttctgatg--ggcatgtatttg-tac-------------------agtgctttggaaaacaat----------gtggtatt-------
i proCoq1.NW_012149419v1    C 0 I 10
s otoGar3.GL873530            6770141 184 -  36342412 -TTTTTTGTTTTGTAATTCTTAGGGTTGACCCAGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCTTTTAAGGTAAGAAAATAGTAACGGGTATC-CATATG-------GG--AGTATATATTTG-TGC-------------------AGTGC-TTGGAAAACAGT----------TTCGTGTC-------
i otoGar3.GL873530          C 0 I 3
s mm10.chr9                  55185647 195 + 124595110 -GCTTTTGTTTTGTTATTCTTAGGGTTGACTCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCTTTTAAGGTAAGAATATTGTAATGGGATTC--ATGTCCTTCTAATGGGAGTATGTAAGTGACTCA------------------GCTGCCTTGGAGAACAAT----------TTGGTAGG-------
i mm10.chr9                 C 0 I 6
s canFam3.chr30                 57181 199 -  40214260 -------CTTTTGTGATTCCTAGGGTTGATCCTGACAGTCCTTTGCACAGTGATCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAATTTCTCTTTTAAGGTAAGAAAATGTTAAggagactc-catatgcttctaatgggaatgtatatttt-taga------------------attgctttggaaaacaatttgatattacttggtaaa-------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              53607 220 -   2180720 -TTTTTTGTTTTGTAATTCTTAGGGTTGATCCTGATAGTCCTTTGCACAGTGACCTTCAGCTTTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCCTTTAAGGTAAGAAAA-AGTAATggaactcccatatacttctaatgggagtgtatatttg-tatcaccttggaaaacaatgttactgttttggaaaacaat----------ttgctatctggtcaa
i dasNov3.JH569975          C 0 C 0
e macNem1.NW_012011056v1      5357593   5 -   6271500 I

a score=747876.000000
s hg38.chr15_KI270850v1_alt    197534  72 +    430880 -gtggaagat-------------------------------------------------------------actcaca-------------ccct-------------------------------------------atggttcaggaa-t----ctcgtggatatatactc-----cacaagaaa-tgagtacataggt
s panTro5.chr15              18007224  72 -  83230942 -gtggaagat-------------------------------------------------------------actcata-------------ccct-------------------------------------------atggttcaggaa-t----ctcgtggatatatactc-----cacaagaaa-tgagtacatatgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17233490  72 -  99763055 -gtggaagat-------------------------------------------------------------actcata-------------ccct-------------------------------------------atggttcaggaa-t----ctcgtggatatatactc-----cacaagaaa-tgagtacatatgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       296147  72 +    378907 -gtggaagat-------------------------------------------------------------actcaca-------------ccct-------------------------------------------atggttcaggaa-t----ctcgtggatatatactt-----cacaagaaa-tgagtacataggt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151684  72 + 121039945 -gtggaagat-------------------------------------------------------------actcata-------------ccct-------------------------------------------atgcttcaggaa-t----ctcgcggatatatactc-----cacaagaaa-tgagtacataggt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362648  71 + 169600520 --gggaagat-------------------------------------------------------------actcata-------------ccct-------------------------------------------atggttcaggaa-t----ctcgtggatatatactc-----cacaagaaa-tgaggacgtaagc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107350040  71 - 171882078 -gtggaagat-------------------------------------------------------------actcata-------------ccct-------------------------------------------atggttcaggaa-t----ctcgtggatatatactc-----cacaag-aa-cgagtacgtaggt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357598  72 -   6271500 -gtggaagat-------------------------------------------------------------actcata-------------ccct-------------------------------------------atagttcaggaa-t----cttgtggatatatactc-----cacaagaaa-tgagtacataggt
i macNem1.NW_012011056v1    I 5 C 0
s cerAty1.NW_012002657v1      1818355  71 -   1987038 --gggaagat-------------------------------------------------------------actcata-------------ccct-------------------------------------------atggttcaggaa-t----ctcgtggatatatactc-----ctcaagaaa-tgagtacgtaagc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21069708  71 -  24206276 -gtggaagat-------------------------------------------------------------actcata-------------ccct-------------------------------------------atggttcaggaa-t----ctcatggatatatactc-----cacaag-aa-cgagtacgtaggt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       306129  71 -   1458659 -gtggaagat-------------------------------------------------------------actcata-------------ccct-------------------------------------------atggttcaggaa-t----cttgtggatacatacac-----cacaag-aa-cgagtacgtaggt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7478440  72 -   9444221 -gtggaagat-------------------------------------------------------------actcata-------------cact-------------------------------------------atggttcaggaa-t----cttatgaatatatactc-----cacaagaaa-tgagtatgtaggt
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018869  72 + 132174527 -atagaagat-------------------------------------------------------------actcata-------------ccct-------------------------------------------gtggttcagaag-t----attgtagacatactctt-----cgtaagaca-tgaatacttaagt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             515989  71 -   3282555 -gtagaagtt-------------------------------------------------------------cctcata-------------ccct-------------------------------------------ttggttcagaag-t----attgcagacatact-gt-----cgtaagatg-tgagtacttacgt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       301253  72 -   1024465 -gtagaagat-------------------------------------------------------------actcata-------------ccct-------------------------------------------gtggttcagaag-t----attgtagacatactctt-----ggtaagaca-tgagtacttaagt
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       746945  72 -   3745603 -ctagaagat-------------------------------------------------------------actcata-------------ccct-------------------------------------------gtggttcagaag-t----attgtagacatactctt-----tgtaagaca-tgagtacttaagt
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 930158  73 - 119751181 -gtagaagat-------------------------------------------------------------actcata-------------ctgt-------------------------------------------gtggttcaggaatt----tttgtaggcgtatactc-----tgtaagaaa-tgagtacttaggt
i micMur3.chr3              I 10 C 0
s proCoq1.NW_012149419v1       653575  73 -   2566024 -gtagaagat-------------------------------------------------------------actcata-------------ccgt-------------------------------------------atggttcaggaatt----cttgtaggcatatactc-----tgtaagaaa-tgagtacttaggt
i proCoq1.NW_012149419v1    I 10 I 9
s otoGar3.GL873530            6770328  53 -  36342412 -------------------------------------------------------------------------------------------------------------------------------------------TGGCTCAGGAATT----CTTGTAAACATGTGCTC-----TGTAAGAAATTGAGTACTTAGgg
i otoGar3.GL873530          I 3 I 42
s mm10.chr9                  55185848 189 + 124595110 -GTTCAGGATTTTTTTTTTTTTCCTTTCCTTttctttttttttgagacaggatttcattgtgtagtctcagactcacagatctgcctacttccctccaactcccaagtgttggaattaaatgttgatactgagtttggctAGTTAAGGAG-T----TGTTGaggtgtatactc-----cacaaaaga-tgaatgcttagac
i mm10.chr9                 I 6 C 0
s canFam3.chr30                 57380  72 -  40214260 -gtagaaggt-------------------------------------------------------------attcatt-------------ccct-------------------------------------------gtggttcaggaa-t----tctcagagtgtatactg-----tgctggaaa-tgagtacttaggt
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              53827  82 -   2180720 gtaagacaat-------------------------------------------------------------atttata-------------tctt-------------------------------------------atgattcaggaa-ttctcctcctaggtatatacccagatataaagaaga-taaatacttatgt
i dasNov3.JH569975          C 0 C 0

a score=-15355.000000
s hg38.chr15_KI270850v1_alt    197606 2 +    430880 g--c
s panTro5.chr15              18007296 2 -  83230942 g--c
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17233562 2 -  99763055 g--c
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       296219 2 +    378907 g--c
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151756 2 + 121039945 g--a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362719 2 + 169600520 a--t
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107350111 2 - 171882078 g--c
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357670 2 -   6271500 g--c
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1818426 2 -   1987038 a--t
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21069779 2 -  24206276 g--c
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       306200 2 -   1458659 g--c
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7478512 2 -   9444221 g--c
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018941 4 + 132174527 gtac
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             516060 4 -   3282555 gtac
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       301325 4 -   1024465 gtac
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       747017 4 -   3745603 gtac
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 930231 2 - 119751181 g--c
i micMur3.chr3              C 0 I 10
s otoGar3.GL873530            6770423 2 -  36342412 g--c
i otoGar3.GL873530          I 42 C 0
s mm10.chr9                  55186037 2 + 124595110 --ac
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 57452 2 -  40214260 --ac
i canFam3.chr30             C 0 I 2
s dasNov3.JH569975              53909 2 -   2180720 g--c
i dasNov3.JH569975          C 0 I 2
e proCoq1.NW_012149419v1       653648 9 -   2566024 I

a score=86372.000000
s hg38.chr15_KI270850v1_alt    197608 12 +    430880 caggag------------------------------------------------------------------------------------acacag----
s panTro5.chr15              18007298 12 -  83230942 caggag------------------------------------------------------------------------------------acacag----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17233564 12 -  99763055 caggag------------------------------------------------------------------------------------acacag----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       296221 12 +    378907 caggag------------------------------------------------------------------------------------acacag----
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151758 12 + 121039945 caggag------------------------------------------------------------------------------------acacag----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362721 12 + 169600520 taggag------------------------------------------------------------------------------------acacag----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107350113 12 - 171882078 cgggag------------------------------------------------------------------------------------acacag----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357672 12 -   6271500 caggag------------------------------------------------------------------------------------acacag----
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1818428 12 -   1987038 taggag------------------------------------------------------------------------------------acacag----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21069781 12 -  24206276 cgggag------------------------------------------------------------------------------------acacag----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       306202 12 -   1458659 caggag------------------------------------------------------------------------------------acacag----
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7478514 12 -   9444221 caggag------------------------------------------------------------------------------------gtacag----
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018945 12 + 132174527 caggag------------------------------------------------------------------------------------acacag----
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             516064 12 -   3282555 caggta------------------------------------------------------------------------------------acacag----
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       301329 12 -   1024465 caggtg------------------------------------------------------------------------------------aaaaag----
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       747021 12 -   3745603 caggtg------------------------------------------------------------------------------------acacag----
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6770425 96 -  36342412 taggaggtggcggaggtggcgggttcaaacccagccccggccaaaaactgcaaaaaaaAAAGAAAAGAAAAAGAAATTGAGTACTTAAATACACAA----
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55186039 12 + 124595110 ctggaa------------------------------------------------------------------------------------acacac----
i mm10.chr9                 C 0 I 2
s canFam3.chr30                 57456 12 -  40214260 caagag------------------------------------------------------------------------------------acccat----
i canFam3.chr30             I 2 I 4
s dasNov3.JH569975              53913 16 -   2180720 caggaa------------------------------------------------------------------------------------acatacagag
i dasNov3.JH569975          I 2 C 0
e micMur3.chr3                 930233 10 - 119751181 I
e proCoq1.NW_012149419v1       653648  9 -   2566024 I

a score=40631.000000
s hg38.chr15_KI270850v1_alt    197620 3 +    430880 gaa
s panTro5.chr15              18007310 3 -  83230942 gaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17233576 3 -  99763055 gaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       296233 3 +    378907 gaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151770 3 + 121039945 gaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362733 3 + 169600520 gaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107350125 3 - 171882078 gaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357684 3 -   6271500 gaa
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1818440 3 -   1987038 gaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21069793 3 -  24206276 gaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       306214 3 -   1458659 gaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7478526 3 -   9444221 gaa
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018957 3 + 132174527 gaa
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             516076 3 -   3282555 gaa
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       301341 3 -   1024465 gaa
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       747033 3 -   3745603 gaa
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       653657 3 -   2566024 gag
i proCoq1.NW_012149419v1    I 9 C 0
s otoGar3.GL873530            6770521 1 -  36342412 --G
i otoGar3.GL873530          C 0 I 5
s mm10.chr9                  55186053 3 + 124595110 gaa
i mm10.chr9                 I 2 C 0
s canFam3.chr30                 57472 2 -  40214260 -ca
i canFam3.chr30             I 4 I 1
s dasNov3.JH569975              53929 3 -   2180720 gga
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 930233 10 - 119751181 I

a score=3159931.000000
s hg38.chr15_KI270850v1_alt    197623 229 +    430880 tgttcagagcagcatcgtttataatagccccaaacagaaa---ataacccaa--atgttcattccaataaaatggagaa-ttgtggtattc--ataaaatggcttacagtcatgtgggacaagat-gagcgaatcttgaacactatgt---taagcaaaagagaccagacccccaaaacct------attttgtacaatttcctctatat--agagttcaaaaataggcaaaacta----atGTTGGTTAGGG------------
s panTro5.chr15              18007313 229 -  83230942 tgttcagagcagcatcgtttataataaccccaaacagaaa---ataacccaa--atgttcattccaataaaatggagaa-ttgtggtattc--ataaaatggcttacagtcatgtgggacaagat-gagcgaatcttgaacactatgt---taagcaaaagagaccagacccccaaaacct------attttgtacaatttcctctatat--agagttcaaaaataggcaaaacta----atgttggttaggg------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17233579 229 -  99763055 tgttcagagcagcatcgtttataataaccccaaacagaaa---ataacccaa--atgttcattccaataaaatggagaa-ttgtggtattc--ataaaatggcttacagtcatgtgggacaagat-gagcgaatcttgaacactatgt---taagcaaaagagaccagacccccaaaacct------attttgtacaatttcctctatat--agagttcaaaaataggcaaaacta----atgttggttaggg------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       296236 229 +    378907 tgttcagagcagcatcgtttatgatagccccaaacagaaa---ataacccaa--atgttcattccaataaaatggagga-ttgtggtattc--ataaaatggcttacagtcatgtgggacaagat-gagcgaatcttgaacactatgt---taagcaaaagagaccagacccccaaaacct------attttgtacaatttcctctatat--agagttcaaaaataggcaaaacta----atGTTGGTGAGGG------------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102151773 229 + 121039945 tgttcagagcagcatcgtttataatagctccaaacagaaa---ataacccaa--atgttcattccaataaaatggagaa-ttgtggtattc--ataaaatggcatacagccatgtgggacaagat-gggcaagtcttgaacactatgt---taagcaaaagagaccagacccccaaaacct------attttgtacaatttcctctgtgt--agagttcaaaaataggcaaaacta----atgttggttaggg------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362736 224 + 169600520 tcttcaga-cagtatcatttataatagccccaaacagaaa---ataacccaa--atgttcattccaataaaatggagaa-ttatggtattc--atagaatggcttacagctatgtgggataagat-gggcgaatcttgaacactacgt---taaacaaaagagaccagacccccaaaacct------aatttgtacaatttcctctatat--agagttcaaaaataggcaaa--------atgttggttaggg------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107350128 229 - 171882078 tgttcagagcagcattgtttgtaatagccacaaacagaaa---ataacccaa--acgttcattccagtaaaatggagaa-ttgtggtattc--ataaaatggcttacagctatgtgggacgagat-gggcgaatcttgaacattatat---taagcaaaagagaccagacccccaaaacgt------attttgtacaattccctctatat--agagttcaaaaataggcaaaactc----atgttggttaggg------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357687 229 -   6271500 tgttcacagcagcatcatttataatagccccaaacagaaa---agaacccaa--atgttcattccaataaactggatga-ttgtggtattc--ataaaatggcttacagttatgtgggatgagat-ggacagatcttgaacactatgt---tgagcaaaagagaccagaccctcaaaactt------attttgtacaatttcctctatac--agacttcaaaaataggcaaaacta----atgttggttaggg------------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1818443 224 -   1987038 tcttcaga-cagtatcgtttataatagccccaaacagaaa---ataacccaa--atgttcattccaataaaatggagaa-ttatggtattc--atagaatggcttacagctatgtgggataagat-gggcgaatcttgaacactacgt---taaacaaaagagaccagacccccaaaacct------aatttgtacaatttcctctatat--agagttcaaaaataggcaaa--------atgttggttaggg------------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21069796 229 -  24206276 tgttcagagcagcattgtttataataaccccaaacagaaa---ataacccaa--atgttcattccagtaaaatggagaa-ttgtggtattc--ataaaatggcttacagctatgtgggatgagat-gggcgaatcttgaacattatat---taagcaaaagagaccagacccccaaaacct------attttgtacaattccctctatat--agagttcaaaaataggcaaaactc----atgttggttaggg------------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       306217 229 -   1458659 tgttcagagcagcattgtttataatagccccaaacagaaa---ataacccaa--atgttcattccagtaaaatggagaa-ttgtggtattc--ataaaatggcttacagctatgtgggacgagat-gggcgaatcttgaacattatat---taagcaaaagagacgagacccccaaaacct------attttgtacaattccctctatat--agagttcaaaaataggcaaaactt----atgttggttaggg------------
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7478529 229 -   9444221 tgttcagagcagcatcatttataatagccccaaacagaaa---ataacccaa--gtgttcattccaagaaaatgaagaa-ttgtggtattc--ataaaatggcttatagctatatgggacaagat-gggcgaaccttgaacactgtgt---taagcaaaagagaccagacccccaaaacct------attttgtacaatttcctctatat--agagttcaaaaataggcaaaacta----atgttggttaggg------------
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18018960 205 + 132174527 tgttcagagcagcatcatttataatagccccagacagaaa---gtaactcag--gtgttcatttca---------------------------ataaaatggtttacagccatgtaggacaagatggggtggatcttaaacacgatga---taagcaaaagagactacactc-caaaacct------aacttatacgattccctttatat--agagttcaaaaacaggtaaaacaa----acgttggttaggg------------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             516079 227 -   3282555 tgttcagagcagcatcatttataatagctccaaacagaaa---ataacccaa--gtgttcatttcaataaaatggagaa-ttgtggtgttt--ataaaatggtttacagctatgtgggacaagatggggtggatctt-gacac-ctaa---taagcaaaagagaccagattc-caaaacct------attttgtacgattccctttatat--agagttcaaaaataggtaaaacaa----atgttggttaggg------------
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       301344 231 -   1024465 tgttcagagcagcatcatttataatagccccaaacagaaa---ataacccaa--gtgttcatttcaataaaatggagaa-ttgtggtgttt--ataaaatggtttacagctgtgtgggacaagatggggtggatcttgaacacaatga---taagcaaaagagaccagactc-caaaactt------attttgtacgattccctttatatagagagttcaaaaataggtaaaacaa----atgttggttaggg------------
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       747036 229 -   3745603 tgttcagagcagcatcatttatagcagccccaaacagaaa---ataacccaa--gtgttcatttcaataaaatggagaa-ttgtggtgttt--ataaaatggtttacagctatgtgggacaagatggggtggatcttgaacacgatga---taagcaaaagagactagactc-caaaacgt------attttgtacaattacctttatat--agagttcaaaaataggtaaaacaa----atGTTGGTTAGGG------------
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 930243 224 - 119751181 tgttcagagtggcactatttataatagcctcaaacagaaa---ataa-cca----tgttcattccaataaaatggagaa-ttatgatattc--acaaaaggg-atacagctacatgcaacaagat-gggtgaatcttaaatacattgt---taagtaaaacaaaccagactc-caaaatct------gttttgtataatttcatttgtat--agagttcaaaaataggtaaaacta----atactgattagga------------
i micMur3.chr3              I 10 C 0
s proCoq1.NW_012149419v1       653660 225 -   2566024 tcttcagagcggcactatttataatagcctcaagcagaaa---ataacccg----tgttcattccaataaaatggagaa-ttgtgatattc--ataaaacag-atacagctacaggcgacaagat-gggtgaatcttaaatatattgt---tgagtaaaacaaaccagactc-caaaacct------gtttttaataatttcatttatat--agagttcaaaaataggtaaaacta----atactgattagga------------
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6770527 210 -  36342412 tgttcagagtgactctgt---taatagccccaaatagaaa---ataaccca----tgttccttccaataaaatggagaa-ttgtggtattc--ataaaatgg-atacagctacatgcaacaagat-gtgtgaatcttaaatccactgt---t-agtaaa-------agattc-caaaacct------gttttttataatttcact----t--agagctcaaaaataggtaaaacta----atattgattaggg------------
i otoGar3.GL873530          I 5 I 64
s mm10.chr9                  55186056 212 + 124595110 tgtgtagagaagcatggtttgtcataaccacaacc--aaa---acaatcca---------GTTATAGTAAATTGGAGAA--TGTGGCATCC--ATAAGAGATATT------------GACAAGAT-AGGTCAGTCTTCTATATAGTATATATAAGTAGAAGAAATTAGACTT---AGACTTTTAGCCATTTTGTGTAGTTCCATTTATAT--AGAATTCAAAAAT-TGTAAAATTA----GTTTTGTATAGGG------------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 57475 236 -  40214260 tgttcagagcagtgttgtttataataattccaaacagaaa---ataacccaagtgtgtctgttacagtagaatggaaaa-ctgtgatattcatataaaaggaaatagagctatatgcagaaaggt-gcgtgaatcttaaacacagtgg---tgagcaaaagaaaccagatcc-caaagcat------gttttgtacaatttcatgtatat--agagctcaaaaataggtaaaactaaattatattgttcaggg------------
i canFam3.chr30             I 1 C 0
s dasNov3.JH569975              53932 228 -   2180720 tattcagagcagcattgtttatactagccccaaatataaaaatataacccaa--atgtccatcccactagaatggaaaaatagtggtagtc--ataaaatggaatacaactatgtgca-----gt-tgatgaatc--aaacatagtat---tgggcaacagaagccagaccc-cagaaaac------attttgta--------tttagat--agagttcaaaaataagtaaaact-----atattgtttagggaattgtttagga
i dasNov3.JH569975          C 0 C 0

a score=443731.000000
s hg38.chr15_KI270850v1_alt    197852 31 +    430880 catacattcttagcggaggcaatatcgcctg
s panTro5.chr15              18007542 31 -  83230942 catacattcttagcggaggcaatatcgcctg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17233808 31 -  99763055 catacattcttagcggaggcaatatcgcctg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       296465 31 +    378907 catacattcttagcggaggcaatatcgcctg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152002 31 + 121039945 catacattcttagtggaggcaatatcgcctg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362960 31 + 169600520 catacattcttagtaggggaaatattgcctg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107350357 31 - 171882078 cacacattcttagtggaggcaatatcgcctg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357916 31 -   6271500 catacattcttagtggaggcaatatcacctg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1818667 31 -   1987038 catacattcttagtagaggaaatattgcctg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21070025 31 -  24206276 catacattcttagtggaggcaatatcgcctg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       306446 31 -   1458659 catacattcttagtggaggcaatatctcctg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7478758 31 -   9444221 catacattcttagtggaggcaatatcacctg
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18019165 31 + 132174527 catacattcttagtagaggcaatgtcacctg
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             516306 31 -   3282555 catacattcttagtggaggcaatgtcacctg
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       301575 31 -   1024465 catacattcttagtggaggcaatgtcacctg
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       747265 31 -   3745603 catacattcttagtggaggcaatgtcacctg
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 930467 31 - 119751181 catgcattctcagtggaggcaatatcaccct
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       653885 31 -   2566024 catgcattctcagtggaggcagtatcacccc
i proCoq1.NW_012149419v1    C 0 C 0
s mm10.chr9                  55186268 21 + 124595110 CATGCGTTTTGAGTGCAGGCA----------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 57711 31 -  40214260 catgcattctcaatagagacaatatccccac
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              54160 31 -   2180720 tatacatttgtaatggaggtcacatcaccct
i dasNov3.JH569975          C 0 C 0
e otoGar3.GL873530            6770737 64 -  36342412 I

a score=272877.000000
s hg38.chr15_KI270850v1_alt    197883 17 +    430880 cagtggagtgaaaatt------g
s panTro5.chr15              18007573 17 -  83230942 cagtggagtgaaaatt------g
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17233839 17 -  99763055 cagtggagtgaaaatt------g
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       296496 17 +    378907 cagtggagtgaaaatt------g
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152033 17 + 121039945 cagtggagtgaaaatt------g
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60362991 17 + 169600520 cagtggagtgaaaact------g
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107350388 17 - 171882078 cagtggagtgaaaatt------g
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357947 17 -   6271500 cattggagtgaaaatc------g
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1818698 17 -   1987038 cagtggagtgaaaact------g
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21070056 17 -  24206276 cagtggagtgaaaatt------g
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       306477 17 -   1458659 cagtggagtgaaaatt------g
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7478789 17 -   9444221 cagtggagtgaaaatt------g
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18019196 17 + 132174527 cagtggagtgaaaatt------g
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             516337 17 -   3282555 ctgtggagtgaaaatt------g
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       301606 17 -   1024465 cattggagtgaaaatt------g
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       747296 17 -   3745603 caatggagtgaaaatt------g
i aotNan1.NW_018511953v1    C 0 I 807
s micMur3.chr3                 930498 17 - 119751181 cagtggggtgaaaatt------g
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       653916 17 -   2566024 cagtggggtgaaaatt------g
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6770801 23 -  36342412 ctgtggtgttaaaattttgtggg
i otoGar3.GL873530          I 64 C 0
s mm10.chr9                  55186289 11 + 124595110 ------AGGGAAATTT------G
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 57742 17 -  40214260 cattggggtgaaaact------g
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              54191 17 -   2180720 caataaagcaaaaatt------a
i dasNov3.JH569975          C 0 C 0

a score=178486.000000
s hg38.chr15_KI270850v1_alt    197900 15 +    430880 gtcctt---agagtgaaa
s panTro5.chr15              18007590 15 -  83230942 gtcctc---agagtgaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17233856 15 -  99763055 gtcctc---agagtgaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       296513 15 +    378907 gtcctt---agagtgaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152050 15 + 121039945 gtcctt---agagtgaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60363008 15 + 169600520 gccctt---agagtgaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107350405 15 - 171882078 gtcctg---agagtgaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357964 15 -   6271500 gtcctt---agagtgaaa
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1818715 15 -   1987038 gtcctt---agagtgaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21070073 15 -  24206276 gtcctt---agagtggaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       306494 15 -   1458659 gtcctt---agagtgaaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7478806 15 -   9444221 gtcctt---agagtaaaa
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18019213 15 + 132174527 atcttt---agagtgaaa
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             516354 14 -   3282555 atcttc---agagtgaa-
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       301623 15 -   1024465 atcttt---agagtgaaa
i cebCap1.NW_016107979v1    C 0 C 0
s micMur3.chr3                 930515 15 - 119751181 gtcctt---ggagtgaaa
i micMur3.chr3              C 0 I 396
s proCoq1.NW_012149419v1       653933 15 -   2566024 gtcctt---ggagtgaaa
i proCoq1.NW_012149419v1    C 0 I 402
s otoGar3.GL873530            6770824 15 -  36342412 gtcagg---ggtatggaa
i otoGar3.GL873530          C 0 I 5
s mm10.chr9                  55186300 14 + 124595110 GTCCTG---TAAATGAA-
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 57759 15 -  40214260 gcctgt---ggagtgaaa
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              54208 17 -   2180720 gtccttgggggagtgaa-
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       747313 807 -   3745603 I

a score=342075.000000
s hg38.chr15_KI270850v1_alt    197915 39 +    430880 gaaaatctgacctattatactggtctgctgccctccaaa
s panTro5.chr15              18007605 39 -  83230942 gaaaatttgacctattataatggtctgctgccctccaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17233871 39 -  99763055 gaaaatttgacctattataatggtctgctgccctccaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       296528 39 +    378907 gaaaatctgacctattatactggtctgctgccctccaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152065 39 + 121039945 gaaaatctgacctattataatggtctgctgccctccaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60363023 39 + 169600520 gaaaatcttacctattataatggtctgctgccctccaaa
i rheMac8.chr7              C 0 I 269
s macFas5.chr7              107350420 39 - 171882078 gaaaatcttacctattaccatggtctgctgccccccaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5357979 39 -   6271500 gaaagtcttacctattgtaatggtctgctgccctccaag
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1818730 39 -   1987038 gaaaatcttacctattataatggtctgctgccctccaaa
i cerAty1.NW_012002657v1    C 0 I 271
s chlSab2.chr29              21070088 39 -  24206276 gaaaatcttacctattatcatggtctgctgccctccaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       306509 39 -   1458659 gcaaatcttaccttttatcatggtctgctgcctcccaaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7478821 39 -   9444221 gaaaatcttacctattataatggtctgctaccctccaaa
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18019228 38 + 132174527 -acaatcttagctattataatggtctgctgccctccaaa
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             516368 36 -   3282555 ---aatcttagctgttataatggtctgctgccctccaaa
i saiBol1.JH378276          C 0 I 2
s cebCap1.NW_016107979v1       301638 38 -   1024465 -acaatcttagctattataatggtctgctgccctccaaa
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530            6770844 27 -  36342412 aaaaat---aatttctaaaaaggcttcttg---------
i otoGar3.GL873530          I 5 C 0
s mm10.chr9                  55186314 38 + 124595110 -ACATTCTTAGGTGTTTTAATGGTCTTTAGCCACAAAAA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 57774 38 -  40214260 -aaaatcttagatattataatagttggtggccttataag
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              54225 22 -   2180720 -caaatcttagatattgtaataa----------------
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 930530 396 - 119751181 I
e proCoq1.NW_012149419v1       653948 402 -   2566024 I
e aotNan1.NW_018511953v1       747313 807 -   3745603 I

a score=-13504.000000
s hg38.chr15_KI270850v1_alt    197954  17 +    430880 cggccatagaacat---------------------------------------------------------------------------------------------------------------------------------aaa
s panTro5.chr15              18007644  14 -  83230942 cagccatagaacat------------------------------------------------------------------------------------------------------------------------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17233910  14 -  99763055 cagccatagaacat------------------------------------------------------------------------------------------------------------------------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       296567  17 +    378907 cagccatagaacat---------------------------------------------------------------------------------------------------------------------------------aaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152104  17 + 121039945 cggccatagaacat---------------------------------------------------------------------------------------------------------------------------------aaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107350459  17 - 171882078 gggccatagaacat---------------------------------------------------------------------------------------------------------------------------------aaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5358018  17 -   6271500 gAGCCATAGAACAT---------------------------------------------------------------------------------------------------------------------------------AAA
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              21070127  17 -  24206276 gggccatagaacat---------------------------------------------------------------------------------------------------------------------------------aaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       306548  17 -   1458659 gggccatagaacat---------------------------------------------------------------------------------------------------------------------------------aaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7478860 113 -   9444221 gggccatagaatat---aaaccaacatacaa-----tatatctg----------------------tggtgttaaaa---ttcaatggggcatgggggtataattagggaggaaacttctaaaaagtcttcttagggggacaaaaa
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18019266  17 + 132174527 gggctacataacat---------------------------------------------------------------------------------------------------------------------------------aaa
i calJac3.chr10             C 0 I 97
s saiBol1.JH378276             516406  17 -   3282555 gggctacgtaacat---------------------------------------------------------------------------------------------------------------------------------aaa
i saiBol1.JH378276          I 2 I 97
s cebCap1.NW_016107979v1       301676  17 -   1024465 gggctacataacat---------------------------------------------------------------------------------------------------------------------------------aaa
i cebCap1.NW_016107979v1    C 0 I 703
s otoGar3.GL873530            6770871  12 -  36342412 -----gtggagcaa---------------------------------------------------------------------------------------------------------------------------------aaa
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55186352  17 + 124595110 CTTCTCTTGTACTA---------------------------------------------------------------------------------------------------------------------------------AAA
i mm10.chr9                 C 0 I 1
s canFam3.chr30                 57812  95 -  40214260 gggacacaatacaatacaatacaataaacaacacagtatatctgtgttgggggatagaataaaatttttttctaaaaagccttagtggagca---------------------------------------------------aaa
i canFam3.chr30             C 0 I 1
s dasNov3.JH569975              54247  17 -   2180720 gggctacagaacat---------------------------------------------------------------------------------------------------------------------------------aaa
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 930530 396 - 119751181 I
e proCoq1.NW_012149419v1       653948 402 -   2566024 I
e aotNan1.NW_018511953v1       747313 807 -   3745603 I
e cerAty1.NW_012002657v1      1818769 271 -   1987038 I
e rheMac8.chr7               60363062 269 + 169600520 I

a score=585000.000000
s hg38.chr15_KI270850v1_alt    197971  99 +    430880 ----------------------------------------------------------------------------------------TGAAAAG----------------AAAACTGAGAAACACttctttatgggttcatact--------tgggcagtaaaactatcaagaaa---aaagaggtgatta-gacacagggtagagtaaggagt
s panTro5.chr15              18007658  97 -  83230942 ------------------------------------------------------------------------------------------aaaAG----------------AAAACTGAGGAACACttctttatgggttcatact--------tgggcagtaaaactatcaagaaa---aaagaggcgatta-cacacagggtagggtaaggagt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17233924  97 -  99763055 ------------------------------------------------------------------------------------------aaaAG----------------AAAACTGAGGAACACttctttatgggttcatact--------tgggcagtaaaactatcaagaaa---aaagaggcgatta-cacacagggtagggtaaggagt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       296584  99 +    378907 ----------------------------------------------------------------------------------------TGAAAAG----------------AAAACTGAGAAACACttctttatgggttcatact--------tgggcagtaaaactatcaagaaa---aaagaggtgatta-gacacagggtagagtaaggagt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152121  97 + 121039945 ----------------------------------------------------------------------------------------TGAAAAG----------------AAAACTGAGAAACACttctttatggattcatact--------tgggcagtaaaactgtcaagaaa---aaagaggtgatta-cacac--ggtagggtaaggagt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107350476  99 - 171882078 ----------------------------------------------------------------------------------------TGAAAAG----------------AGAACTGAGAAACACttatttatggattcatact--------tgggcagtaaaactgtcaagaaa---aaagaggtgatta-cacacagagtacgttaaggagt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5358035  99 -   6271500 ----------------------------------------------------------------------------------------TGAAAAG----------------AAAACTGAGAAACACttatttatggattcatagt--------tgggcagtaaaactatcaagaaa---aaagaggtgatta-cacacagggtagggtaaggagt
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              21070144  99 -  24206276 ----------------------------------------------------------------------------------------TGAAAAG----------------AGAACTGAGAAACACttatttatggattcatact--------tgggcagtaaaactgtcaagaaa---aaagaggtgatta-cacacagagtacgttaaggagt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       306565  99 -   1458659 ----------------------------------------------------------------------------------------TGAAAAG----------------AGAACTGAGAAACACttatttatggattcatact--------tgggcagtaaaactgtcaagaaa---aaagaggtgatta-cacacagagtacgttaaggagt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7478973  99 -   9444221 ----------------------------------------------------------------------------------------tgaaaag----------------aaaactgagaaacacttatttctgggttcatact--------tgggcagtaaaactatcaagaac---aaagaggtgatta-catagaggttagggtaaggagt
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18019380  97 + 132174527 ----------------------------------------------------------------------------------------tgaaaag----------------aaaactgagaaacacttatttatggattcatact--------agggtagtaaaactaccaagaac---aaagaggtgatta-catacaggttaggataagga--
i calJac3.chr10             I 97 C 0
s saiBol1.JH378276             516520  97 -   3282555 ----------------------------------------------------------------------------------------tgaaaag----------------aaaactgaggaacacttatttatggattcatact--------tgggtagtaaaactactaagaac---aaagaggtgatta-catacaggttaggataagga--
i saiBol1.JH378276          I 97 C 0
s otoGar3.GL873530            6770884 111 -  36342412 ----------------------------------------------------------------------------------------taaaaga----------------agggatgagaaacactAATTTATGGATTCATACTGGGGGGAGGGggcagtaaaactatcaagaaaagcaaagatgtgattaccatagagattaggataaggagt
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  55186370 106 + 124595110 ----------------------------------------------------------------------------------------TCAATGGGGCCGGGAACCCTGCTAAAACTAGAAAAAAC--ATTTCTAGGTAGACTTT--------TTAGGTACGAAACAGTGAGAAAA---GAAAGCTCAAAAG-CATGAAGTCAGTGTT-------
i mm10.chr9                 I 1 I 1
s canFam3.chr30                 57908  98 -  40214260 ----------------------------------------------------------------------------------------tgaaaag-------------------cctgagaaacacagatttatggattcaaact--------tgggtagtt--actttcaaggaaagcaaagatgtgattaccatacagttgaggatagggagt
i canFam3.chr30             I 1 C 0
s dasNov3.JH569975              54264 168 -   2180720 cagtatagtatatttgtggtggtaaaaattttgtgagaggtgggcaattaggtaaacatttctaacagactccttaggaggtgatagtgaaaaaa----------------aaggctggcaaatactggtttatggattcatact--------tgggcaataaaactatcaagaaaagcaaagacatgttta-----------------------
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 930530 396 - 119751181 I
e proCoq1.NW_012149419v1       653948 402 -   2566024 I
e aotNan1.NW_018511953v1       747313 807 -   3745603 I
e cebCap1.NW_016107979v1       301693 703 -   1024465 I
e cerAty1.NW_012002657v1      1818769 271 -   1987038 I
e rheMac8.chr7               60363062 269 + 169600520 I

a score=1353370.000000
s hg38.chr15_KI270850v1_alt    198070 165 +    430880 ccatct---------------aggtggg-agg-------------------------tagggaggtg-tgaactgaaaggtacatc-tgtgggcttctt-ggatactggctgtaatatatttctggacca-ggttggtggttacatgggcaaataatttaaaataacttgttaaggtctaccttaaggtatcttttgtgtacttttctga
s panTro5.chr15              18007755 165 -  83230942 ccatct---------------aggtgga-agg-------------------------tagggaggtg-tgaactgaaaggtacatc-tgtgggcttctt-ggatactggctgtaatatatttctggacca-ggttggtggttacatgggcaaataatttagaataacttgttaaggcctaccttaaggtatactttgtgtacttttctga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234021 165 -  99763055 ccatct---------------aggtgga-agg-------------------------tagggaggtg-tgaactgaaaagtacatc-tgtgggcttctt-ggatactggctgtaatatatttctggacca-ggttggtggttacatgggcaaataatttagaataacttgttaaggcctaccttaaggtatactttgtgtacttttctga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       296683 165 +    378907 ccatct---------------aggtggg-agg-------------------------tagggaggtg-tgaactgaaaggtacatc-tgtgggcttctt-ggatactggctgtaatatatttctggacca-ggttggtggttacatgggcaaataatttaaaataacttattaaggtctaccttaaggtatcttttgtgtacttttctga
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152218 165 + 121039945 ccatct---------------agctggg-agg-------------------------tagggaggtg-tgagctgaaaggtacatc-tgtgggcttctt-ggatactggctgtaatatatttctggacca-ggttggtggttacatgggcaaataatttagaataacttgttaaggtctaccttaagatatattttgtgtacttttctga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60363331 162 + 169600520 CCATCg---------------aggtggg-agg-------------------------tagggaggtg-tgaactgaaaggtacaac-tgtgggcttctt-ggataccggctgtaatatatttcgggacca-ggttggtgggtatttgggctaataatttacaataac---ttaagctataccttaaggtatattttatgtacttttctga
i rheMac8.chr7              I 269 I 4
s macFas5.chr7              107350575 180 - 171882078 ccatcttagggaggactcctaaggtggg-agg-------------------------tagggaggtg-tgaactgaaaggtacgtc-tgtgggcttctt-ggatcctggctctaatatctttctgaagca-ggctggtggttaaatgggcaaataatttagaataacttgttaaggtctaccttaaagtatattttgtgtacttttctga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5358134 166 -   6271500 ccatct---------------aggtggg-agg-------------------------tagagaggtg-tgaactgaaaggtacatc-tgtgggcttctt-ggatactggctgtaatatatttctggaccagggttggtggttacatggacaaataatttagaataacttgttaaggtctactttaagctatattttgtgtacttttctga
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1819040 162 -   1987038 ccatcg---------------aggtggg-aga-------------------------tagggaggtg-tgaactgaaaggtacaac-tgtgggcttctt-ggataccggctgtaatatatttcgggacca-ggttggtgggtatttgggcaaataatttacaataac---ttaagctataccttaaggtatattttatgtacttttctga
i cerAty1.NW_012002657v1    I 271 I 4
s chlSab2.chr29              21070243 165 -  24206276 ccatct---------------aggtggg-agg-------------------------tagggaggtg-tgaactgaaaggtacatc-tgtgggcttctt-ggatcctggctctaatatctttctggagca-ggctggtggttaaatgggcaaatagtttagaataacttgttaaggtctaccttaaagtatattttgtgtacttttctga
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       306664 165 -   1458659 ccatct---------------aggtggg-agg-------------------------tagggaggtg-tgaactgaaaggtacgtc-tgtgggcttctt-ggatcctggctctaatatctttctgaagca-ggctggtggttaaatgggcacataatttagaataacttgttaaggtctaccttgaagtatattttgtgtacttttctga
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479072 165 -   9444221 ccatct---------------aggtgag-agg-------------------------tagggaggtg-tgaactgaaaggtacatc-tgtgggcttctt-ggatactggctggaatatatttctggacca-ggttggtagttacatgggcaaataatttacaataacttgttaagatataccgtaaggtatattttatatacttttctga
i colAng1.NW_012112253v1    C 0 I 4
s calJac3.chr10              18019477 153 + 132174527 -----------------------gtggg-agg-------------------------taaggaggta-tgaactgaaagatacatc-tgtgggcttctt-agatactggctgtaatgtatttcttgacca-ggttggtggttacatgggcacataatttataataaattcttaaggtgtacctc----tgtattttatgtacttttctgt
i calJac3.chr10             C 0 I 4
s saiBol1.JH378276             516617 153 -   3282555 -----------------------gtggg-agg-------------------------taaggaggtg-tgaactgaaagatacatc-tgtgggcttctt-ggatactggctgtaatatattccttgacca-ggttggtggttacatgggcacataatttataataacttcttaaagtgtacctc----tgtgttttatgtacttttctga
i saiBol1.JH378276          C 0 I 4
s otoGar3.GL873530            6770995 160 -  36342412 ttgcct---------------cagtggc-agt-------------------------gagggaattg-ggagctgaaagggacatc-tataggcttttg-tcataccgactgtaatccagttcttgacca-gggtggtggttacattggcatgta-cttaaaatatcttgttcaggtgtacctc----tgtatttcatgctcttttataa
i otoGar3.GL873530          C 0 I 4
s mm10.chr9                  55186477 151 + 124595110 ATACCT---------------GGGCAAC-AGGACCAGAAGCGAAGGTGTGATCACCATAAAGAGTTACTGAGTAGACAGAGACATC-TGTAGGCTTC------------------------------------CTGTTAGTCACGTGGGTATCCTGTTTACAATAA-TTGCTAAAGTTTCCCT----GTATA-TTTATGTCCCTTTTGGA
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 58006 154 -  40214260 actacg---------------aggtgag-agg-------------------------gagggagtta-tgagctgaaaggaatatc-tggggatttctt-ggatactggctctggcctgttttct--cta-ggatgctgattacatggatgcatatttgataata---tataatggtgtacctt----tatatgttatgtactttt--ga
i canFam3.chr30             C 0 I 4
s dasNov3.JH569975              54432 151 -   2180720 -cctct---------------agatgggaagg-------------------------aagggggttg-tgagctgaaagggatatcttgggggattcttgggatactggctataatcagtttcttgacct-gtgtggtgattacatgg-cacatgtcttacaa-----------ggtgtatgtt----tattttttatgcacttttctga
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 930530 396 - 119751181 I
e proCoq1.NW_012149419v1       653948 402 -   2566024 I
e aotNan1.NW_018511953v1       747313 807 -   3745603 I
e cebCap1.NW_016107979v1       301693 703 -   1024465 I

a score=113377.000000
s hg38.chr15_KI270850v1_alt    198235 12 +    430880 ----atgtgttatatt
s panTro5.chr15              18007920 12 -  83230942 ----atgtgttatatt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234186 12 -  99763055 ----atgtgttatatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       296848 12 +    378907 ----atgtgttatatt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152383 12 + 121039945 ----atgtgttatatt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60363497 12 + 169600520 ----atgtgttatatt
i rheMac8.chr7              I 4 C 0
s macFas5.chr7              107350755 11 - 171882078 ----atgtgttata-t
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5358300 12 -   6271500 ----acgtgttatatt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1819206 12 -   1987038 ----atgtgttatatt
i cerAty1.NW_012002657v1    I 4 C 0
s chlSab2.chr29              21070408 12 -  24206276 ----atgtgttatatt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       306829 11 -   1458659 ----atgtgttata-t
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479241 12 -   9444221 ----atgtgttacatt
i colAng1.NW_012112253v1    I 4 C 0
s calJac3.chr10              18019634 12 + 132174527 ----acgtgttatatt
i calJac3.chr10             I 4 I 299
s saiBol1.JH378276             516774 12 -   3282555 ----atgtgttatatt
i saiBol1.JH378276          I 4 I 308
s micMur3.chr3                 930926 12 - 119751181 ----atgtgttatttT
i micMur3.chr3              I 396 C 0
s proCoq1.NW_012149419v1       654350 12 -   2566024 ----atgtgttatgtt
i proCoq1.NW_012149419v1    I 402 C 0
s otoGar3.GL873530            6771159 12 -  36342412 ----atgtgctatatt
i otoGar3.GL873530          I 4 C 0
s mm10.chr9                  55186628  6 + 124595110 --------ATTACT--
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 58164 12 -  40214260 ----ataggttatatt
i canFam3.chr30             I 4 C 0
s dasNov3.JH569975              54583 10 -   2180720 attcatgtGT------
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       747313 807 -   3745603 I
e cebCap1.NW_016107979v1       301693 703 -   1024465 I

a score=384280.000000
s hg38.chr15_KI270850v1_alt    198247 39 +    430880 taataaAGTA-CTTTTAAGATACCAAAAATAAAGGTT-ACA---
s panTro5.chr15              18007932 34 -  83230942 taataaAGTA-CTTTTAAGATACTA-----AAAGGTT-ACA---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234198 34 -  99763055 taataaAGTA-CTTTTAAGATACTA-----AAAGGTT-ACA---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       296860 39 +    378907 taataaAGTA-CTTTTAAGATACCAAAAATAAAGGTT-GCA---
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152395 39 + 121039945 taataaAGTA-CTTTTAAGATAGCAAAAATAAAGGTT-ACA---
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60363509 39 + 169600520 taataaAGTA-TTTTTAAGATACTAAAAATAAAGGTT-ACC---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107350766 39 - 171882078 tAATAAAGTA-TTTTTAAGATACTAAAAATGAAGGTT-ACA---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5358312 39 -   6271500 taataaAGTG-TTTTTAAGATACTAAAAATAAAGGTT-ACA---
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1819218 39 -   1987038 taataaAGTA-TTTTTAAGATACTAAAAATAAAGGTT-ACC---
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21070420 39 -  24206276 taataaAGTA-TTTTTAAGATACTAAAAATAAAGGTT-ACA---
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       306840 39 -   1458659 tAATAAAGTA-TTTTTAAGATACTAAAAATGAAGGTT-ACA---
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479253 39 -   9444221 taataaAGTA-TTTTTAAGATACTAAAAATAAAGGTT-ACG---
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18019945 36 + 132174527 TAATAAAGTA-TTTTTAAGATGCTAAAAATAATGGTT-------
i calJac3.chr10             I 299 C 0
s saiBol1.JH378276             517094 36 -   3282555 TAATAAAGTA-TTGTTAAGATGCTAAAAATAATGGTT-------
i saiBol1.JH378276          I 308 C 0
s aotNan1.NW_018511953v1       748120 37 -   3745603 TAATAAAGTA-TTTTTAAGATGCTAAAAATAATGGTTA------
i aotNan1.NW_018511953v1    I 807 C 0
s micMur3.chr3                 930938 35 - 119751181 TGATAAGGTA-TTTTTAGGATGCTAAAAAT----GTT-AAA---
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       654362 39 -   2566024 tgataaAGTA-TTTTTAAGATGCTAAAAATAAAGGTT-AAA---
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6771171 31 -  36342412 tgataaAG-------TAAGACGCTAAAAAAAA--GTC-AAA---
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55186634 34 + 124595110 -----TAGTA-ATTTGAAGCTGTTAAAAATAAAGGTT-AAA---
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 58176 26 -  40214260 -----taata-tttttaatgt-----taataaaGGTT-------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              54593 43 -   2180720 TTATAAAGTATTTTTTAAGGTGATAAAAATAAAAAAT-TTAGAA
i dasNov3.JH569975          C 0 C 0
e cebCap1.NW_016107979v1       301693 703 -   1024465 I

a score=1216357.000000
s hg38.chr15_KI270850v1_alt    198286 81 +    430880 AAAGAATAACAATGGAATCTAG-AAAAAATGTTAATGATCTAA--TATGGAATCTAGACAAGATGTAAT-GGCTTAAAATCTATG
s panTro5.chr15              18007966 81 -  83230942 AAAGAATAAGAATGGAATCTAG-AAAAAATGTTAATGATCTAA--TATGGAATCTAGATAAGATGTAAT-GTTTTAAAATCTATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234232 81 -  99763055 AAAGAATAAGAATGGAATCTAG-AAAAAATGTTAATGATCTAA--TATGGAATCTAGATAAGATGTAAT-GTTTTAAAATCTATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       296899 81 +    378907 AAAGAATAACAATGGAATCTAG-AAAAAATGTTAATGATCTAA--TATGGAATCTAGACAAGATGTAAT-GGTTTAAAATCTATG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152434 82 + 121039945 AAAGAATAACAATGGAATCTAGAAAAAAAAGTTAATGATCTAA--TATGGAATCTAGATAAGATGTAAT-GGTTTAAAATCTATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60363548 81 + 169600520 AAAGAATAACAATGGAATCTAG-AAAAAATGTTAATGATCTAA--TATGAAATCTAGATAAGATATAAT-GGTTTAAAATCTATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107350805 76 - 171882078 AAACTATAACAATGGAATCTAG-AAAAAATGTTAATGATCTAA--TATGGAATCT-----AGATGTAAT-GGTTTAAAATCTATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5358351 80 -   6271500 AAAGAATAACAAGAAAATCTAG--AAAAATGTTAATGATCTAA--TATGGAATCTGGATAAGACGTAAT-GGTTTAAAATCTATG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1819257 81 -   1987038 AAAGAATAACAATGGAATCTAG-AAAAAATGTTAATGATCTAA--TATGAAATCTAGATAAGATGTAAT-GGTTTAAAATCTATG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21070459 81 -  24206276 AAACAATAACAATGGAATCTAG-AAAAAATGTTAATGATCTAA--TATGGAATCTAGATAAGATGTAAT-GGTTTAAAATCTATG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       306879 76 -   1458659 AAACAATAACAATGGAATCTAG-AAAAAATGTTAATGATCTAA--TATGGAATCT-----AGATGTAAT-GGTTTAAAATCTATG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479292 81 -   9444221 AAGGAATAACAATGGAATCTAG-AAAAAATGTTAATGATCTAA--TATGGAATCTAGACAAGATGTAAT-GGTTTAAAATCTATG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18019981 80 + 132174527 AAAGAATAGCAGTGCAATCTAG-AAAAAATGTTAATGATTTAA--TATGG-ATCTGGATACAATGTAAT-GGTTTAAAATTTATG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             517130 80 -   3282555 AAAGAATAGCAGTGCAATCTAG-AAAAAATGTTAATGATTTAA--TATGG-ATCTGGATACAATGTAAT-GGTTTAAAATTTATG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       302396 80 -   1024465 AAAGAATAGCAATGTAATCTAG-AAAAAATGTTAATGATTTGA--TATGG-ATCTCAATACAATGTAAT-GGTTTAAAATTTATG
i cebCap1.NW_016107979v1    I 703 C 0
s aotNan1.NW_018511953v1       748157 80 -   3745603 -AAGAATAGCAATGAAATCTAGAAAAAAATGTTAATGATTTAA--TATGG-ATCTGGATACAATGTAAT-GGTTTAAAATTTATG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 930973 81 - 119751181 AAAGAATAGCAGTGGAATCTAG-ATAAAATGTTAATGATTTAA--TATGAAATCTGGATAAAGTGTAAT-GGTTTAAAGTCTATG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       654401 81 -   2566024 AAAGAATAGCAATGGAATCTGG-ATAAAACGTTAATGATTTAA--TATGAAATTTAGATAAAGTGTAAT-GGTTTAAAGTCTATG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6771202 81 -  36342412 AAAGAATAGCAATGAAATCTAT-ATAACATGTTAATGATATAA--TATGAAATCTGGATGAAACATAAT-GGTTTAAAATCTACG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55186668 81 + 124595110 AAAGAATAGCAATGGGCTCTAG-ATAAAATGTTAGTGATTTAATGTATATAATAT-GGTAAGATCTAAC-GATTGGACATCT-CA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 58202 80 -  40214260 GAAAAATAGCAATGAAATTTAG-ATAAAATG-TAGTGATTTAA--TACGAAATATGGATAA-ATGTAGTCTATTTTAAATCTTTG
i canFam3.chr30             C 0 I 736
s dasNov3.JH569975              54636 81 -   2180720 AAAGAATAGCCATGGAATCTAG-GAAAAATGTTAGTGATTTAA--TATAGAATCTAGATAAAATGTAAT-GGTTATAAATCTTTA
i dasNov3.JH569975          C 0 C 0

a score=10999.000000
s hg38.chr15_KI270850v1_alt    198367 4 +    430880 GCTA--
s panTro5.chr15              18008047 4 -  83230942 GCTA--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234313 4 -  99763055 GCTA--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       296980 4 +    378907 GCTA--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152516 4 + 121039945 GCTA--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60363629 4 + 169600520 GCTA--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107350881 4 - 171882078 GCTA--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5358431 4 -   6271500 GCTA--
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1819338 4 -   1987038 GCTA--
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21070540 4 -  24206276 GCTG--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       306955 4 -   1458659 GCTG--
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479373 4 -   9444221 GCTA--
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18020061 4 + 132174527 GGTA--
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             517210 4 -   3282555 GATA--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       302476 4 -   1024465 GATA--
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       748237 4 -   3745603 GATA--
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 931054 2 - 119751181 G--A--
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       654482 2 -   2566024 G--A--
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6771283 2 -  36342412 G--A--
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55186749 4 + 124595110 ACTA--
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              54717 3 -   2180720 ---AAA
i dasNov3.JH569975          C 0 C 0
e canFam3.chr30                 58282 736 -  40214260 I

a score=223253.000000
s hg38.chr15_KI270850v1_alt    198371 15 +    430880 TA-TGAAGTATTTTGA
s panTro5.chr15              18008051 15 -  83230942 TA-TGAAGTATTTTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234317 15 -  99763055 TA-TGAAGTATTTTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       296984 15 +    378907 TA-TGAAGTATTTTGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152520 15 + 121039945 TA-TGAAGTATTTTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60363633 15 + 169600520 TA-GGAAGCATTTTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107350885 15 - 171882078 TA-TGAAGTATTTTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5358435 15 -   6271500 TA-TGAAGTATTTTGA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1819342 15 -   1987038 TA-GGAAGCATTTTCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21070544 15 -  24206276 TA-TGAAGTATTTTGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       306959 15 -   1458659 TA-TGAGGTATTTTGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479377 15 -   9444221 TA-TGAGGCATTTTGA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18020065 15 + 132174527 TA-TGAGATATTTTGA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             517214 15 -   3282555 TG-TGAGATATTTTGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       302480 15 -   1024465 TA-TGAGATATTTTGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       748241 15 -   3745603 TA-TGAGATATTTTGA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 931056 15 - 119751181 TA-TGAGATATTTTGA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       654484 15 -   2566024 TA-TGAGATATTTTGA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6771285 15 -  36342412 TA-TGAGATATTTTGA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55186753 16 + 124595110 GATTGAGGTGCTTTGA
i mm10.chr9                 C 0 I 3974
s canFam3.chr30                 59018 15 -  40214260 TA-TGAAGGGTTTTGA
i canFam3.chr30             I 736 I 1
s dasNov3.JH569975              54720 15 -   2180720 TA-CTAAATCCTTTGT
i dasNov3.JH569975          C 0 C 0

a score=29684.000000
s hg38.chr15_KI270850v1_alt    198386 7 +    430880 TGAAAAA
s panTro5.chr15              18008066 5 -  83230942 TG--AAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234332 5 -  99763055 TG--AAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       296999 7 +    378907 TGAAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152535 7 + 121039945 TGAAACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60363648 7 + 169600520 TGAAAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107350900 7 - 171882078 TGAAAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5358450 7 -   6271500 TGAAAAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1819357 7 -   1987038 TGAAAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21070559 7 -  24206276 TGAAAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       306974 7 -   1458659 TGAAAAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479392 6 -   9444221 TGAAAA-
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18020080 7 + 132174527 TGGAAAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             517229 7 -   3282555 TGGAAAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       302495 7 -   1024465 TGGAAAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       748256 7 -   3745603 TGGAAAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 931071 5 - 119751181 AGGAA--
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       654499 5 -   2566024 AGGAA--
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6771300 5 -  36342412 AGGAA--
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 59034 6 -  40214260 -GGAAGA
i canFam3.chr30             I 1 I 1
s dasNov3.JH569975              54735 7 -   2180720 TCAAAAA
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55186769 3974 + 124595110 I

a score=149064.000000
s hg38.chr15_KI270850v1_alt    198393 22 +    430880 AACAAAGACA--------------------------------TAAAGGAATACT
s panTro5.chr15              18008071 22 -  83230942 CACACAGACA--------------------------------TAAAAGAATACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234337 22 -  99763055 CACACAGACA--------------------------------TAAAAGAATACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297006 22 +    378907 AACAAAGACA--------------------------------TAAAGGAATACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152542 22 + 121039945 CACAAAGACA--------------------------------TAAAGGAATACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60363655 22 + 169600520 AACAAAGACA--------------------------------TAAAAGAATACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107350907 22 - 171882078 AACAAAGACA--------------------------------TAAAAGAATACT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1819364 22 -   1987038 AACAAAGACA--------------------------------TAAAAGAATACT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21070566 22 -  24206276 AACAAAGACA--------------------------------TAAAAGAATACT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       306981 22 -   1458659 AACAAAGACA--------------------------------TAAAAGAATACT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479398 22 -   9444221 AGCAAAGACA--------------------------------TAAAAGAATACT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18020087  6 + 132174527 ------------------------------------------------AATACT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             517236  9 -   3282555 ---------------------------------------------AAGAATACT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       302502  9 -   1024465 ---------------------------------------------AAGAATACT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       748263  9 -   3745603 ---------------------------------------------AAGAATACT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 931076 22 - 119751181 AACAAAGACA--------------------------------TGAAAGAATACT
i micMur3.chr3              C 0 I 76
s proCoq1.NW_012149419v1       654504 22 -   2566024 AACAAAGACA--------------------------------TGAAAGAATACT
i proCoq1.NW_012149419v1    C 0 I 45
s otoGar3.GL873530            6771305 21 -  36342412 AAC-AAGATG--------------------------------TGAGAGAACACT
i otoGar3.GL873530          C 0 I 1
s canFam3.chr30                 59041 22 -  40214260 AGCAAAGACA--------------------------------TGAAAGGGTACT
i canFam3.chr30             I 1 C 0
s dasNov3.JH569975              54742 54 -   2180720 ACCTAGGAAATGTTTCTACAATTGTAAGTTTGCTTCTCCATTTAAAAGAAGAGG
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C

a score=225100.000000
s hg38.chr15_KI270850v1_alt    198415  41 +    430880 -------------------------------------------------T-TGTTGTACTTAC-------TCTAAGGATGGTAGTAGTTTTCTAAAAG-------------------
s panTro5.chr15              18008093  37 -  83230942 -------------------------------------------------T-TGTTGTACTT-----------TAAGGATGGTAGTAGTTTTCTAAAAG-------------------
i panTro5.chr15             C 0 I 3
s panPan2.chr15              17234359  37 -  99763055 -------------------------------------------------T-TGTTGTACTT-----------TAAGGATGGTAGTAGTTTTCTAAAAG-------------------
i panPan2.chr15             C 0 I 3
s gorGor5.CYUI01015946v1       297028  41 +    378907 -------------------------------------------------T-TGTTGTACTTAC-------TCTAAGGATGGTAGTAGTTTTCTAAAAG-------------------
i gorGor5.CYUI01015946v1    C 0 I 3
s nomLeu3.chr6              102152564  37 + 121039945 -------------------------------------------------T-TGTTGTACTT-----------TAAGGATGGTAGTAGTTTTCTAAAAG-------------------
i nomLeu3.chr6              C 0 I 3
s rheMac8.chr7               60363677  41 + 169600520 -------------------------------------------------T-TGTTGTACTTAC-------TCCAAGGATGATAGTAGTTTTCTAAAAG-------------------
i rheMac8.chr7              C 0 I 3
s macFas5.chr7              107350929  41 - 171882078 -------------------------------------------------T-TGTTGTACTTAC-------TCTAAGGATGGTAGTGGTTTTCTGAAAG-------------------
i macFas5.chr7              C 0 I 3
s cerAty1.NW_012002657v1      1819386  41 -   1987038 -------------------------------------------------T-TGTTGTACTTAC-------TCCAAGGATGATAGTAGTTTTCTAAAAG-------------------
i cerAty1.NW_012002657v1    C 0 I 3
s chlSab2.chr29              21070588  41 -  24206276 -------------------------------------------------T-TGTTGTACTTAC-------TCTAAGGATGGTAGTAGTTTTCTGAAAG-------------------
i chlSab2.chr29             C 0 I 3
s manLeu1.NW_012105520v1       307003  41 -   1458659 -------------------------------------------------T-TGTTGTACTTAC-------TCTAAGGATGGTAGTAGTTTTCTAAAAG-------------------
i manLeu1.NW_012105520v1    C 0 I 3
s colAng1.NW_012112253v1      7479420  41 -   9444221 -------------------------------------------------T-TGTTGTACTTAC-------TCTAAGGATGGTAGTAGTTTTCTAAAAG-------------------
i colAng1.NW_012112253v1    C 0 I 3
s calJac3.chr10              18020093  42 + 132174527 -------------------------------------------------TCCTTTGTACTTGC-------AAAAACGATAGTAATAATTTTCTAAAAG-------------------
i calJac3.chr10             C 0 I 3
s saiBol1.JH378276             517245  42 -   3282555 -------------------------------------------------GCCTTTGTACTTAC-------AAAAACGATAGTAATACTTTTCTAAAAG-------------------
i saiBol1.JH378276          C 0 I 3
s cebCap1.NW_016107979v1       302511  42 -   1024465 -------------------------------------------------TCCTTTGTACTTAC-------AAACACGATAGTAGTAATTTTCTCAAAG-------------------
i cebCap1.NW_016107979v1    C 0 I 3
s aotNan1.NW_018511953v1       748272  42 -   3745603 -------------------------------------------------TCCTTTGTACTTAC-------AAAAATGATAGTAATAATTTTCTAAAAG-------------------
i aotNan1.NW_018511953v1    C 0 I 3
s otoGar3.GL873530            6771327  40 -  36342412 -------------------------------------------------T-CCTTGTACTTAC-------A-AAAGAATCGTTACAATTTTCTGAAAG-------------------
i otoGar3.GL873530          I 1 I 3
s canFam3.chr30                 59063  33 -  40214260 -----------------------------------------------------TTATACTTGC-------AAAAAAAAC-----TAATTTTCTGGAAG-------------------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              54796 114 -   2180720 TTGAAAAGAAAAAGTTCCATATAATTCAATTGTAACTCCTTAGAAATACT-TCCTAGACTTCCCACTGTATCTGATGATA--AATATCTGGCTTGAAGATATGCAGACATCTAATCT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 931098  76 - 119751181 I
e proCoq1.NW_012149419v1       654526  45 -   2566024 I
e mm10.chr9                  55186769 3974 + 124595110 I
e macNem1.NW_012011056v1      5358457   0 -   6271500 C

a score=288334.000000
s hg38.chr15_KI270850v1_alt    198456 32 +    430880 CTTACTTAGCTTTTTCATGTG--TATATTTTTCC
s panTro5.chr15              18008133 32 -  83230942 CTTACTTAGCTTTTTCATGTG--TGTATTTTTGC
i panTro5.chr15             I 3 C 0
s panPan2.chr15              17234399 32 -  99763055 CTTACTTAGCTTTTTCATGTG--TGTATCTTTGC
i panPan2.chr15             I 3 C 0
s gorGor5.CYUI01015946v1       297072 32 +    378907 CTTACTTAGCTTTTTCATGTG--TGTATTTTTGC
i gorGor5.CYUI01015946v1    I 3 C 0
s nomLeu3.chr6              102152604 32 + 121039945 CTTACTTAGCTTTTTCATGTG--TCTATTTTTCC
i nomLeu3.chr6              I 3 C 0
s rheMac8.chr7               60363721 32 + 169600520 CTTACTTAGCTTTTTTGTGTG--TGTATTTTTGC
i rheMac8.chr7              I 3 C 0
s macFas5.chr7              107350973 32 - 171882078 CTGACTTAGATTTTCTGTGTG--TGTATTTTTGC
i macFas5.chr7              I 3 C 0
s cerAty1.NW_012002657v1      1819430 32 -   1987038 CTTACTTAGCTTTTTTGTGTG--TGTATTTTTGC
i cerAty1.NW_012002657v1    I 3 C 0
s chlSab2.chr29              21070632 32 -  24206276 CTTACTTAGATTTTCTGTGTG--TGTATTTTTGC
i chlSab2.chr29             I 3 C 0
s manLeu1.NW_012105520v1       307047 32 -   1458659 CTTACTTAGCTTTTCTGTGTA--TGTATTTTCGC
i manLeu1.NW_012105520v1    I 3 C 0
s colAng1.NW_012112253v1      7479464 31 -   9444221 CTTACTTAGCTTTT-TGTGTG--TATATTTTTGC
i colAng1.NW_012112253v1    I 3 C 0
s calJac3.chr10              18020138 32 + 132174527 CTTACATAGTTCTTTTATGTG--TATATTTTGGC
i calJac3.chr10             I 3 C 0
s saiBol1.JH378276             517290 32 -   3282555 CTTACATAGCTTTTTTATGTG--TATATTTTTGC
i saiBol1.JH378276          I 3 C 0
s cebCap1.NW_016107979v1       302556 32 -   1024465 CTTACATAGCTTTTTTATGTG--TATATTTTTGC
i cebCap1.NW_016107979v1    I 3 C 0
s aotNan1.NW_018511953v1       748317 32 -   3745603 CTTACATAACTTTTTTATGTG--TATATTTTTGC
i aotNan1.NW_018511953v1    I 3 C 0
s proCoq1.NW_012149419v1       654571 32 -   2566024 CTTACCTCCCCTTTGTGCGTG--TGTATTCTTGT
i proCoq1.NW_012149419v1    I 45 C 0
s otoGar3.GL873530            6771370 28 -  36342412 CTTATCTTGCTTTTGTGCATG--TCTATCT----
i otoGar3.GL873530          I 3 I 3
s canFam3.chr30                 59096 26 -  40214260 ------CATCTTTTGCATGTA--TATATTTTTGT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              54910 34 -   2180720 GTGATTTCTCTTCTTAAAGGACCTATAGTCTTTC
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 931098 76 - 119751181 I
e mm10.chr9                  55186769 3974 + 124595110 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C

a score=1334982.000000
s hg38.chr15_KI270850v1_alt    198488 123 +    430880 TTGGGGATATATC-----TTATGATTGA-ACTTT----CTTGAAATGACCCTAAT-----GTTA-------GTATTTT-------CTCTCAATTTTGTTATCA-----TAGAAACTGT---------TGTGGTTG--TCAACtgggttgtcttc----------------ctaa-----------------agtatgaatc-------
s panTro5.chr15              18008165 123 -  83230942 TTGGGGATATATC-----TTACGATTGA-ACTTT----CTTGAAATGACCCTAAT-----GTTA-------GTATTTT-------CTCTCAATTTTGTTATCA-----TAGAAACCGT---------TGTGGTTG--TCAACTGAGTTGTCTTC----------------CTGA-----------------AGTATGAATC-------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234431 123 -  99763055 TTGGGGATATATC-----TTACGATTGA-ACTTT----CTTGAAATGACCCTAAT-----GTTA-------GTATTTT-------CTCTCAATTTTGTTATCA-----TAGAAACTGT---------TGTGGTTG--TCAACTGAGTTGTCTTC----------------CTGA-----------------AGTATGAATC-------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297104 123 +    378907 TTGGGGATATATC-----TTATGATTGA-ACTTT----CTTGAAATGACCCTAAT-----GTTA-------GTATTTT-------CTCTCACTTTTGTTATCA-----TAGAAACTGT---------TGTGGTTG--TCAACtgtgttgtcttc----------------ctga-----------------agtatgaatc-------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152636 123 + 121039945 TTGGGGATGTATC-----TTATGATTGA-ACTTT----CTTGAAATGACCCTAAT-----GTTA-------GTATTTT-------CTCTCACTTTTGTTATCA-----TAGAAACTGT---------TGTGGTTG--TCAACTGGGTTCTCTTC----------------CTAA-----------------AGTATGAATC-------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60363753 122 + 169600520 TTGGGGATATATC-----TTATGATTGA-ACTTT----CTTGAAATGACCCTAAT-----GT-A-------GTATTTT-------CTATCACTTCTGTTATCA-----TAGAAACTGT---------TGTGGTTG--TCAACTGGATTGTCTTC----------------CTAA-----------------AGTATGAATC-------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107351005 123 - 171882078 TTGGGAATATGTC-----TTATGATTAA-ACTGT----CTTGAAATGACCCTAAT-----GTCA-------GTATTTT-------CTCTGACTTTTGTTAGCA-----TAGAAACTGT---------TGTGGTTG--TCAACTGGGTTGTCTTC----------------CTAA-----------------AGTATGAGTC-------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1819462 122 -   1987038 TTGGGGCTATATC-----TTATGATTGA-ACTTT----CTTGAAATGACCCTAAT-----GT-A-------GTATTTT-------CTATCACTTTTGTTATCA-----TAGAAACTGT---------TGTGGTTG--TCAACTGGATTGTCTTC----------------CTAA-----------------AGTATGAATC-------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21070664 123 -  24206276 TTGGGGATATGTC-----TTATGATTAA-ACTGT----CTTGAAATGACCCTAAT-----GTCA-------GTATTTT-------CTCTGACTTTTGTTAGCA-----TAGAAACTGT---------TGTGGTTG--TCAACTGGGTTGTCTTC----------------CTAA-----------------AGTATGAGTC-------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       307079 123 -   1458659 TTGGGGATATGTC-----TTATGATTAA-ACTGT----CTTGAAATGACCCTAAT-----GTCA-------GTATTTT-------CTCTGACTTTTGTTAGCA-----TAGAAACTGT---------TGTGGTTG--TCAACTGGGTTGTCTTC----------------CTAA-----------------AGTATGAGTC-------
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479495 106 -   9444221 TTGGGGATATATC-----TTATGACTGA-ACTTT----CTTGAAATTACCCTAAT-----GTCA-------GTATTTT-------CTCTCACTTTTGTTATCA-----TAGAAACTGT---------TGTGGTTG--TCAACTGGGTTGTC---------------------------------------------------------
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18020170 123 + 132174527 TTGGGGATATATC-----TTATGATTGA-ACTTT----CTTGAAATGACCCAAAT-----TTCA-------GTATTAC-------CTGTCACTATTGTTATCA-----TAGAAACTGT---------TGTGGTTG--TCAACTGGGTTGTCTTC----------------CTAA-----------------AGTATGAATC-------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             517322 123 -   3282555 TTGGGGATATACC-----TTGTGATTGA-ACTTT----CTTGAAATGACCCAAAT-----GTCA-------GTATTAC-------CTGTCACTATTGTTATCA-----TAGAAACTGT---------TGTGGTTG--TCAACTGGGTTGTCTTC----------------TTAA-----------------AGTATGAATC-------
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       302588 119 -   1024465 TTGGGGATATATC-----TTATGGTTGA-ACTTT----CTTGAAATGATCCAAAT-----GTTA-------GTGT-----------TGTCACTATTGTTATCA-----TAGAAACTGT---------TGTGGTTG--TCAACtgagttgtcttc----------------ctaa-----------------agtatgaatc-------
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       748349 121 -   3745603 TTGGGGATATATC-----TTATGATTGA-ACTTT----CTTGAAATGACCCAAAT-----GTCA-------GTATTAC-------TTGTCACTATTGTTATCA-----TAGAAACTGT---------TGTGGTTG--TCAACTGGGTTGTCTTC----------------CTAA-------------------TATGAATC-------
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 931174 123 - 119751181 TTGGGGATATATC-----TTATGATTGA-ATTTT----CTTGAAATTGCCCAAAT-----ATGA-------GTATTTT-------CTCTCAGTTTTTTTATTA-----TCAGAACTGT---------TGTGGTTG--TCAACTGGGTTGTCTCC----------------TTAG-----------------AGTGTGAATC-------
i micMur3.chr3              I 76 I 471
s proCoq1.NW_012149419v1       654603 123 -   2566024 TTGGGGATATATC-----TTATGATTGA-ATTTT----CTTGAAATTGCCCAACT-----ATCA-------GGATTTT-------CTCTCAGTTTTTTTATTG-----Tcagaactgt---------tgtggttg--tcaactgtgttgtctcc----------------ctag-----------------agtgtgaatc-------
i proCoq1.NW_012149419v1    C 0 I 4
s otoGar3.GL873530            6771401 121 -  36342412 ATGATGACATAGC-----TTATGATTGA-AGGTT----CTTGAAATCGCCCAAAT-----AGGT-------GTGTATTGGTATCCTTTTCAGTTTTATTATTG-----TAGGGACTAC---------TGTGGGTA----------GATCCCTCC-----------------TAG-----------------AGTAGGGATC-------
i otoGar3.GL873530          I 3 I 4
s canFam3.chr30                 59122 152 -  40214260 CTGGGGATATATCTTCATTTATGATTCA-ACTTT----CTTCAATTTACCCAAAT-----GTCAAATGTCTGTATTTT-------CCCTCAGTTTTGTTATTA-----TAGAAACTCT---------TGTGGTTG--TCAGTTGAGATGCTTTT----------------CAACTGAGTATAGGTATTCCCAGAGTGAGTC-------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              54944 170 -   2180720 -TGGAGAGAAAT------TTGTGATCAAGACTATGGGGCTTGGGGAGGTCCTAATGAAGAGCTG-------GGATTTT-------ACCCTTCTTCAGTAAAGAGCCTTTAGAAGTTTTATGCCCAGGTGTGCTTGATTTAGTTAGGCTTTTTCCTCTTTTTTTTCCCCCCCTAA-----------------AGCATGATTTATGCCTT
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e macNem1.NW_012011056v1      5358457   0 -   6271500 C

a score=644136.000000
s hg38.chr15_KI270850v1_alt    198611 65 +    430880 ------------------cagtata----ggctgaagttgctaatggctacttc-----tttacggattcatatgggtga--acgaatgaagca
s panTro5.chr15              18008288 69 -  83230942 ------------------CAGTATATATTGACTGAAGTTGCTAATGGCTACTTC-----TTTACGGATTCATATGGGTGA--ACGAATGAAGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234554 69 -  99763055 ------------------CAGTATATATTGACTGAAGTTGCTAATGGCTACTTC-----TTTACGGATTCATATGGGTGA--ACGAATGAAGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297227 69 +    378907 ------------------cagtatatattgactgaagttgctaatggctgcttc-----tttacggattcatatgggtga--acgaatgaagca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152759 69 + 121039945 ------------------CAGTATATATTGACTGAAGTTGCTAATGGCTACTTC-----TTTACGGATTCATGTGGGTGA--ACGAATGAAACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60363875 69 + 169600520 ------------------CGGTATATATTGATTGAAGTTGTTAATGGCTACTTC-----TTTACAGATTCATATGGGGGA--ATGAATGAAGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107351128 69 - 171882078 ------------------TAGTATATATTGACTGAAGTTGCTAATGGTTACTTC-----TCTATGGATTCATATGGGTAA--ACGAATGAAGCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1819584 69 -   1987038 ------------------CGGTATATATTGATTGAAGTTGTTAATGGCTACTTC-----TTTACGGATTCATATGGGGGA--ACGAATGAAGCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21070787 69 -  24206276 ------------------TAGTATATATTGACTAAAGTTGCTAATGGTTACTTC-----TCTATGGATTCATATGGGTAA--ACGAATGAAGCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       307202 69 -   1458659 ------------------TAGTATATATTGACTGAAGTTGCTAATGGTAACTTC-----TCTACGGATTCATATGGGTAA--ACGAATGAAGCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479601 51 -   9444221 ------------------------------------GCTGCTAATGGCTACTTC-----TTTATGGATTCATATGGGAGA--ACGAATGAAGCA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18020293 69 + 132174527 ------------------TGGTATATATTGATTGAAGTTGCTAATGGCTACATT-----TTTGCTAATTCATATGGGGAA--ACAAATGAAGCA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             517445 69 -   3282555 ------------------TGGTATATATTGACTGAAGTTGCTAATGGCAACATT-----TTTACTAATTCATATGGGGGA--GCAGATGAAGCA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       302707 69 -   1024465 ------------------tggtatatattgactaaagttgctaatggctacatt-----tttactaattcatatggggga--acaaatgaagca
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       748470 69 -   3745603 ------------------TGGAATATATTGACTGAAGTTGCTAATGGCTACATT-----TTTACTAATTCATATGGGGGA--ACAAATGAAGCA
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       654730 65 -   2566024 ----------------------ctgtgtttactgaagttgctaatgactgcatt-----tttactgattcttatggggaa--atgaatgaAATG
i proCoq1.NW_012149419v1    I 4 C 0
s otoGar3.GL873530            6771526 65 -  36342412 ----------------------CTATGTTTACTGAAGTTGCTAATGACTGTGTT-----TTTACTGATTCGTCTGGTGGG--ATGATTGAAATA
i otoGar3.GL873530          I 4 C 0
s canFam3.chr30                 59274 68 -  40214260 ------------------TGGTATATATTTACTGAAGTTGCTAATGACTGCATT-----TTTATTGATTCGTAT-GTTGA--AAAAATAAACCA
i canFam3.chr30             C 0 I 52
s dasNov3.JH569975              55114 94 -   2180720 CAGCATCAAAAAAGGGGTTGGAAAGGGTAGAGTAGATTTCTGGAAGACTAGTTTTGGGGTTTTTGTTTTAATATGGGCAAGGAATAATGAAGAC
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 931297 471 - 119751181 I
e mm10.chr9                  55186769 3974 + 124595110 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C

a score=3913.000000
s hg38.chr15_KI270850v1_alt    198676 2 +    430880 ct
s panTro5.chr15              18008357 2 -  83230942 CA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234623 2 -  99763055 CA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297296 2 +    378907 ca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152828 2 + 121039945 TG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60363944 2 + 169600520 CA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107351197 2 - 171882078 CG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1819653 2 -   1987038 CA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21070856 2 -  24206276 TG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       307271 2 -   1458659 CG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479652 2 -   9444221 CG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18020362 2 + 132174527 CC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             517514 2 -   3282555 CC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       302776 2 -   1024465 cc
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       748539 2 -   3745603 CC
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       654795 2 -   2566024 CC
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6771591 2 -  36342412 CC
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              55208 2 -   2180720 CT
i dasNov3.JH569975          C 0 I 427
e micMur3.chr3                 931297 471 - 119751181 I
e mm10.chr9                  55186769 3974 + 124595110 I
e canFam3.chr30                 59342 52 -  40214260 I
e macNem1.NW_012011056v1      5358457 0 -   6271500 C

a score=151491.000000
s hg38.chr15_KI270850v1_alt    198678 18 +    430880 cagGCCTACAAC-AAAAAA
s panTro5.chr15              18008359 18 -  83230942 TGGGCCTACAAC-AAAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234625 18 -  99763055 TGGGCCTACAAC-AAAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297298 18 +    378907 CAGGCCTACAAC-AAAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152830 18 + 121039945 CAGGCCTACAAC-AAAAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60363946 18 + 169600520 CAGGCCTACAAC-AAAAAA
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              107351199 18 - 171882078 CAGGCCTACAAC-AAAAAA
i macFas5.chr7              C 0 I 1
s cerAty1.NW_012002657v1      1819655 18 -   1987038 CAGGCCTACAAC-AAAAAA
i cerAty1.NW_012002657v1    C 0 I 1331
s chlSab2.chr29              21070858 19 -  24206276 CAGGCCTACAACAAAAaaa
i chlSab2.chr29             C 0 I 1
s manLeu1.NW_012105520v1       307273 18 -   1458659 CATGCCTACAAC-AAAAAA
i manLeu1.NW_012105520v1    C 0 I 1
s colAng1.NW_012112253v1      7479654 18 -   9444221 CAGGCCTAAAAC-AAAAAA
i colAng1.NW_012112253v1    C 0 I 2
s calJac3.chr10              18020364 18 + 132174527 CAGGCCAAAACC-AAAAAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             517516 17 -   3282555 CAGGCCAAAAAC--AAAAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       302778 18 -   1024465 caggccaaaaac-AAAAAA
i cebCap1.NW_016107979v1    C 0 I 35
s aotNan1.NW_018511953v1       748541 18 -   3745603 CAGGCCAAAAAC-AAAAAA
i aotNan1.NW_018511953v1    C 0 I 124
s proCoq1.NW_012149419v1       654797 17 -   2566024 CAGGCC-Aaaac-aaaaca
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6771593 16 -  36342412 CAGGCC--AAAC-AGAACA
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 931297 471 - 119751181 I
e mm10.chr9                  55186769 3974 + 124595110 I
e dasNov3.JH569975              55210 427 -   2180720 I
e canFam3.chr30                 59342 52 -  40214260 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C

a score=-26709.000000
s hg38.chr15_KI270850v1_alt    198696 2 +    430880 -AA
s panTro5.chr15              18008377 2 -  83230942 -AA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234643 1 -  99763055 -A-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297316 2 +    378907 -CA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152848 2 + 121039945 -CA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60363965 1 + 169600520 -A-
i rheMac8.chr7              I 1 I 62
s macFas5.chr7              107351218 1 - 171882078 -A-
i macFas5.chr7              I 1 C 0
s chlSab2.chr29              21070878 1 -  24206276 -a-
i chlSab2.chr29             I 1 C 0
s manLeu1.NW_012105520v1       307292 1 -   1458659 -A-
i manLeu1.NW_012105520v1    I 1 C 0
s colAng1.NW_012112253v1      7479674 1 -   9444221 -A-
i colAng1.NW_012112253v1    I 2 C 0
s calJac3.chr10              18020382 1 + 132174527 --A
i calJac3.chr10             C 0 I 1
s saiBol1.JH378276             517533 1 -   3282555 --A
i saiBol1.JH378276          C 0 I 1
s proCoq1.NW_012149419v1       654814 2 -   2566024 aa-
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6771609 2 -  36342412 AA-
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 931297 471 - 119751181 I
e aotNan1.NW_018511953v1       748559 124 -   3745603 I
e mm10.chr9                  55186769 3974 + 124595110 I
e dasNov3.JH569975              55210 427 -   2180720 I
e canFam3.chr30                 59342 52 -  40214260 I
e cebCap1.NW_016107979v1       302796 35 -   1024465 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457 0 -   6271500 C

a score=4338.000000
s hg38.chr15_KI270850v1_alt    198698 5 +    430880 CACAC
s panTro5.chr15              18008379 4 -  83230942 -ACAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234644 4 -  99763055 -ACAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297318 4 +    378907 -AAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152850 5 + 121039945 CACAC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351219 5 - 171882078 GACAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21070879 5 -  24206276 gacat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       307293 5 -   1458659 GACAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479675 5 -   9444221 AACAC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18020384 3 + 132174527 --AAA
i calJac3.chr10             I 1 C 0
s saiBol1.JH378276             517535 3 -   3282555 --AAA
i saiBol1.JH378276          I 1 C 0
s proCoq1.NW_012149419v1       654816 5 -   2566024 caaac
i proCoq1.NW_012149419v1    C 0 I 98
s otoGar3.GL873530            6771611 5 -  36342412 CAAAA
i otoGar3.GL873530          C 0 I 5
e micMur3.chr3                 931297 471 - 119751181 I
e aotNan1.NW_018511953v1       748559 124 -   3745603 I
e mm10.chr9                  55186769 3974 + 124595110 I
e dasNov3.JH569975              55210 427 -   2180720 I
e canFam3.chr30                 59342 52 -  40214260 I
e cebCap1.NW_016107979v1       302796 35 -   1024465 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457 0 -   6271500 C
e rheMac8.chr7               60363966 62 + 169600520 I

a score=69414.000000
s hg38.chr15_KI270850v1_alt    198703 26 +    430880 ACACACAAAAAACAGGAAGATACCAT
s panTro5.chr15              18008383 26 -  83230942 ACACACACTAAACAGGAAGATACCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234648 26 -  99763055 ACACACACTAAACAGGAAGATACCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297322 25 +    378907 ACACA-AAAAAACAGGAAGATACCAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152855 25 + 121039945 TCACA-AAAAAACAGGAAGATACCAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351224 23 - 171882078 ACACACAAAA---AGGAAGATATAAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21070884 23 -  24206276 acacacaaaa---aggaagatataat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       307298 23 -   1458659 ACACACAAAA---AGGAAGATATAAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479680 26 -   9444221 ATACACAAAAAACAGGACGGTATCTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18020387 25 + 132174527 ACACA-AAAAACCAGGAAGGTATCTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             517538 25 -   3282555 ACACA-AAAAACCAGAAAGGTATCTT
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6771621 23 -  36342412 ---TGGAAAAACCAGTAAGGTAACTT
i otoGar3.GL873530          I 5 C 0
e micMur3.chr3                 931297 471 - 119751181 I
e proCoq1.NW_012149419v1       654821 98 -   2566024 I
e aotNan1.NW_018511953v1       748559 124 -   3745603 I
e mm10.chr9                  55186769 3974 + 124595110 I
e dasNov3.JH569975              55210 427 -   2180720 I
e canFam3.chr30                 59342 52 -  40214260 I
e cebCap1.NW_016107979v1       302796 35 -   1024465 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60363966 62 + 169600520 I

a score=-19893.000000
s hg38.chr15_KI270850v1_alt    198729  7 +    430880 TTTT-A-AA-----
s panTro5.chr15              18008409  7 -  83230942 TTTT-T-TA-----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234674  6 -  99763055 TTTT---TA-----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297347  8 +    378907 TTTTAA-AA-----
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152880  7 + 121039945 TTTT-T-AA-----
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351247  5 - 171882078 TTtt-t--------
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21070907  8 -  24206276 tttt-ttaa-----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       307321  6 -   1458659 TTTT-T--A-----
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479706  6 -   9444221 TCTT-T--T-----
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18020412  5 + 132174527 TCTT-T--------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             517563  5 -   3282555 TCTT-T--------
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6771644  4 -  36342412 TTTA----------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 59394 11 -  40214260 -TTT-T-AACGTGA
i canFam3.chr30             I 52 C 0
e micMur3.chr3                 931297 471 - 119751181 I
e proCoq1.NW_012149419v1       654821 98 -   2566024 I
e aotNan1.NW_018511953v1       748559 124 -   3745603 I
e mm10.chr9                  55186769 3974 + 124595110 I
e dasNov3.JH569975              55210 427 -   2180720 I
e cebCap1.NW_016107979v1       302796 35 -   1024465 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60363966 62 + 169600520 I

a score=192557.000000
s hg38.chr15_KI270850v1_alt    198736 34 +    430880 AAAAAACATTAAATCATATGAACATATGCACAAC
s panTro5.chr15              18008416 34 -  83230942 aaaaaacattaaatcatatgaacatatgcgcaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234680 34 -  99763055 AAAAAACATTAAATCATATGAACATATGCGCAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297355 34 +    378907 AAAAAGCATTAAATCATATGAAcatatgcccaac
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152887 34 + 121039945 TAAAAACATTAAATCATATGAACATATGTGCAAC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351252 34 - 171882078 aaaaaacattaaatcatatgaacatatgcccaac
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21070915 34 -  24206276 aaaaaacattaaatcatatgaacatatgcccaac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       307327 34 -   1458659 AAAAAACATTAAATCATATGAAcatatgcccaac
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479712 34 -   9444221 TTAAAACATTGAATCATATGTCCATATGCCCAAC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18020417 34 + 132174527 TTAAAACATTAAATCATATGTCCATATGCTTAAC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             517568 34 -   3282555 TTAAAACATTAAGTCATATGTCCATATGCCTAAC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       302831 34 -   1024465 AAAAAACATTAAATCGTATGTCCATATGCCTAAC
i cebCap1.NW_016107979v1    I 35 C 0
s otoGar3.GL873530            6771648 24 -  36342412 ----------AAATCACATGCTTATGTACCCAAC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 59405 34 -  40214260 ACAATCTATTAAATCATATTCCCACATGTCCAAT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 931297 471 - 119751181 I
e proCoq1.NW_012149419v1       654821 98 -   2566024 I
e aotNan1.NW_018511953v1       748559 124 -   3745603 I
e mm10.chr9                  55186769 3974 + 124595110 I
e dasNov3.JH569975              55210 427 -   2180720 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60363966 62 + 169600520 I

a score=75979.000000
s hg38.chr15_KI270850v1_alt    198770 9 +    430880 ACCAAACTT
s panTro5.chr15              18008450 9 -  83230942 accaaactt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234714 9 -  99763055 ACCAAACTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297389 9 +    378907 accaaactt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152921 9 + 121039945 ATCAAACTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60364028 9 + 169600520 ACCCAACTT
i rheMac8.chr7              I 62 C 0
s macFas5.chr7              107351286 9 - 171882078 accaaactt
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21070949 9 -  24206276 accaaactt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       307361 9 -   1458659 accaaactt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479746 9 -   9444221 ACCAGACTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18020451 9 + 132174527 ATCAAACTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             517602 9 -   3282555 ACCAAACTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       302865 9 -   1024465 ACCAAACTT
i cebCap1.NW_016107979v1    C 0 I 47
s otoGar3.GL873530            6771672 9 -  36342412 ACCAAACTT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 59439 9 -  40214260 ACCAAGGTT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 931297 471 - 119751181 I
e proCoq1.NW_012149419v1       654821 98 -   2566024 I
e aotNan1.NW_018511953v1       748559 124 -   3745603 I
e mm10.chr9                  55186769 3974 + 124595110 I
e dasNov3.JH569975              55210 427 -   2180720 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457 0 -   6271500 C

a score=80318.000000
s hg38.chr15_KI270850v1_alt    198779 18 +    430880 TAAAGAAATAGAACCTTT
s panTro5.chr15              18008459 16 -  83230942 c--agaaatagaaccttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234723 16 -  99763055 C--AGAAATAGAACCTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297398 16 +    378907 a--agaaatagaatctgt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152930 16 + 121039945 A--AGAAATAGAACCTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60364037 16 + 169600520 A--AGAAATAGAAACTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107351295 16 - 171882078 a--agaaatagaaccttt
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21070958 16 -  24206276 a--agaaatagaaccttt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       307370 16 -   1458659 a--agaaatagaaccttt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479755 16 -   9444221 A--AGAAATAGAACCTTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18020460 15 + 132174527 ---AAGAATATAACCTTT
i calJac3.chr10             C 0 I 831
s otoGar3.GL873530            6771681 15 -  36342412 A--AGAAATAGAACCTT-
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 59448 15 -  40214260 A--AGAAATAGAACCTT-
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 931297 471 - 119751181 I
e proCoq1.NW_012149419v1       654821 98 -   2566024 I
e aotNan1.NW_018511953v1       748559 124 -   3745603 I
e mm10.chr9                  55186769 3974 + 124595110 I
e dasNov3.JH569975              55210 427 -   2180720 I
e cebCap1.NW_016107979v1       302874 47 -   1024465 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e saiBol1.JH378276             517611  0 -   3282555 C

a score=88378.000000
s hg38.chr15_KI270850v1_alt    198797 25 +    430880 ggctgggcatggtggctcacgcctg
s panTro5.chr15              18008475 25 -  83230942 ggctgggcgtgctggctcacgtccg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234739 25 -  99763055 ggctgggcgtgctggctcacgtccg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297414 25 +    378907 ggctgggtgtggtggctcacgccca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152946 25 + 121039945 ggctgggcgtggtggctcacgcctg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60364053 25 + 169600520 ggctgggtgttgtggctcacacctg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107351311 25 - 171882078 ggctgggcgtggtggctcactcctg
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21070974 25 -  24206276 ggctgggcgtggtggctcactcctg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       307386 25 -   1458659 ggctgggcgtggtggctcactcctg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479771 25 -   9444221 ggctgggcatggtggctcacgcctg
i colAng1.NW_012112253v1    C 0 C 0
s canFam3.chr30                 59463  7 -  40214260 ------------------ACACCTG
i canFam3.chr30             C 0 I 2
e micMur3.chr3                 931297 471 - 119751181 I
e proCoq1.NW_012149419v1       654821 98 -   2566024 I
e aotNan1.NW_018511953v1       748559 124 -   3745603 I
e mm10.chr9                  55186769 3974 + 124595110 I
e calJac3.chr10              18020475 831 + 132174527 I
e dasNov3.JH569975              55210 427 -   2180720 I
e cebCap1.NW_016107979v1       302874 47 -   1024465 I
e otoGar3.GL873530            6771696  0 -  36342412 C
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e saiBol1.JH378276             517611  0 -   3282555 C

a score=29046.000000
s hg38.chr15_KI270850v1_alt    198822 10 +    430880 taatcccagc
s panTro5.chr15              18008500 10 -  83230942 taatcccagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234764 10 -  99763055 taatcccagc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297439 10 +    378907 taatcccagc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152971 10 + 121039945 taatcccagc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351336 10 - 171882078 taattccagc
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21070999 10 -  24206276 taattccagc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       307411 10 -   1458659 taattccagc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479796 10 -   9444221 taatcctagc
i colAng1.NW_012112253v1    C 0 C 0
s canFam3.chr30                 59472  7 -  40214260 ggatccc---
i canFam3.chr30             I 2 C 0
e micMur3.chr3                 931297 471 - 119751181 I
e proCoq1.NW_012149419v1       654821 98 -   2566024 I
e aotNan1.NW_018511953v1       748559 124 -   3745603 I
e mm10.chr9                  55186769 3974 + 124595110 I
e calJac3.chr10              18020475 831 + 132174527 I
e dasNov3.JH569975              55210 427 -   2180720 I
e cebCap1.NW_016107979v1       302874 47 -   1024465 I
e otoGar3.GL873530            6771696  0 -  36342412 C
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C
e saiBol1.JH378276             517611  0 -   3282555 C

a score=250479.000000
s hg38.chr15_KI270850v1_alt    198832 69 +    430880 ac-ttgggaggccaaggcaggtggatcacctgaggacaggagtttgagaccagccc--agccaagatggtga
s panTro5.chr15              18008510 70 -  83230942 tctttgggaggccgaggcaggtggatcacctgaggacaggagtttgagaccagccc--agccagcatggcga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234774 70 -  99763055 tctttgggaggccgaggcaggtggatcacctgaggacaggagtttgagaccagccc--agccagcatggcga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297449 70 +    378907 actttgggaggctgaggcaggtggatcacctaaggacaggagtttgagaccagccc--agccaacatggtga
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102152981 70 + 121039945 actttgggaggccgaggcaggtggatcacctgaggacaggagtttgagaccagccc--ggccaacatggtga
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351346 70 - 171882078 actttgggaggccgaggcaggtggatcgcttgaggacaggagtttgagaccagcct--ggtcaacatggtga
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21071009 70 -  24206276 actttgggaggccgaggcaggtggatcgcttgaggacaggagtttgagaccagcct--ggtcaacatggtga
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       307421 70 -   1458659 actttgggaggccgaggcaggtggatcactttaggacaggagtttgagaccagcct--ggtcaacatggtga
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479806 70 -   9444221 attttgggagaccaaggcaggcagatcacctgaggtcaggaattcgagaccagcct--tgccaacttggtga
i colAng1.NW_012112253v1    C 0 C 0
s proCoq1.NW_012149419v1       654919 69 -   2566024 -ACTTCggaggctgaggcagaaggatcacttgaagccaggaggtcgagaccagcct--gggaaacatagcga
i proCoq1.NW_012149419v1    I 98 C 0
s otoGar3.GL873530            6771696 57 -  36342412 ------AAaggctgagttgggagcatcacttgaagccgggagttcaagaccagcct--gggcaac-------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 59479 45 -  40214260 ----tgggtggct-----------------------cagcagttgagcatcttccttcagcccaggtcgtga
i canFam3.chr30             C 0 I 177
e micMur3.chr3                 931297 471 - 119751181 I
e aotNan1.NW_018511953v1       748559 124 -   3745603 I
e mm10.chr9                  55186769 3974 + 124595110 I
e calJac3.chr10              18020475 831 + 132174527 I
e dasNov3.JH569975              55210 427 -   2180720 I
e cebCap1.NW_016107979v1       302874 47 -   1024465 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C
e saiBol1.JH378276             517611  0 -   3282555 C

a score=588216.000000
s hg38.chr15_KI270850v1_alt    198901 161 +    430880 aaccccatctctactaaaaatac-----aaaaattagccaggcgtggtggcaggtgcctgtaatcccagctacttgggaggctgaggtgggagaatcacttgaacctaggaggcagaggttgcagtgagccaagattgcaccattgcactcaacagcctgggtgac
s panTro5.chr15              18008580 159 -  83230942 agccccatctctactaaaaatac-----aaaaatcagccaggtgtggtggcaggtgcctgtaatcccagctacttgggaggctgaggtgggagaatcacttgaacctaggaggcagaggttgcagtgagccaagattgcatcattgcactc--cagcctgggtgag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17234844 159 -  99763055 agccccatctctactaaaaatac-----aaaaatcagccaggtgtggtggcaggtgcctgtaatcccagctacttgggaggctgaggtgggagaatcacttgaacctaggaggcagaggttgcagtgagccaagattgcatcattgcactc--cagcctgggtgag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297519 159 +    378907 aaccccatctctactaaaaatac-----aaaaattagccaggcatggtggcaggtgcctgtaatcccagctacttgggaggctgaggtgggaaaatcacttgaacccaggaggcagaggttgcagtgagccaagagcaacacattgcactc--cagcctgggtgac
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102153051 159 + 121039945 aaccccatctctactaaaaatac-----aaaaattagccaggcgtggtggcaggtgcctgtaatcccacctacttgggaggctgaggtgggagaatcacttgaacctaggaggcagaggttgcagtgagccaagattgcaccattgcactc--cagcctgggtgag
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351416 159 - 171882078 aaccccacctctactaaaaatac-----aaaaataagccgggtgtgatggccagtgtctctaatcccagctacttgggaggctgaggtgggagaatcacttgaacccaggaggcagaggttgcagtgagccaagatcacaccattgtactc--caacctgggtgac
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21071079 159 -  24206276 aaccccacctctactaaaaatac-----aaaaataagccgggtgtgatggccagtgtctctaattccagctacttgggaggctgaggtgggagaatcacttgaacccagaaggcagaggttgcagtgagccgagatcgcaccattgtactc--caacctgggtgac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       307491 159 -   1458659 aaccccacctctactaaaaatac-----aaaaattagccgggtgtgaaggccagtgtctctaatcccagctacttgggaggctgaggtgggagaatcacttgaacccaggaggtagaggttgcagtgagccgagatcgcaccattgtactc--caacctgggtgac
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7479876 159 -   9444221 aaccccatctctactaaaaatac----aaaaaattagcc-agcatggtggtgggcacctgtaatcccagcttcttgggaggctgaggtgggagaatcacttgaacccaggaggcagaggttgcagtgggccgagattgcatcgttgcactc--cagccttggtgac
i colAng1.NW_012112253v1    C 0 C 0
s proCoq1.NW_012149419v1       654988 159 -   2566024 gaccccatctcta--aaaaatttttttaaaaaattagccagtcattgtggca--tgcctatagtcctagccatttgggaggctgaggaaggaggatcacttgagcccaggagttcaaggttgcagtgagctat-atcacaccactatactc--cagcctgggtgac
i proCoq1.NW_012149419v1    C 0 I 16
s otoGar3.GL873530            6771753 144 -  36342412 ------------a--aagaatgtttttaaaaag-tagccagtcactgtggca--tgcctttagtcccagtcattt-ggaggctgaggtgagaggatcacttgagcccaggagtttgaggttacagtgagttatgatcacaccactatactc--ca--cagggtaac
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 931297 471 - 119751181 I
e aotNan1.NW_018511953v1       748559 124 -   3745603 I
e mm10.chr9                  55186769 3974 + 124595110 I
e calJac3.chr10              18020475 831 + 132174527 I
e dasNov3.JH569975              55210 427 -   2180720 I
e canFam3.chr30                 59524 177 -  40214260 I
e cebCap1.NW_016107979v1       302874  47 -   1024465 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457   0 -   6271500 C
e rheMac8.chr7               60364078   0 + 169600520 C
e saiBol1.JH378276             517611   0 -   3282555 C

a score=64284.000000
s hg38.chr15_KI270850v1_alt    199062 29 +    430880 tagagtgaaactccatctcaaaa--aataaa
s panTro5.chr15              18008739 29 -  83230942 aagagtgaaacgccatctcaaaa--aataaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17235003 29 -  99763055 aagagtgaaacgccatctcaaaa--aataaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297678 29 +    378907 aagagtgaaactccatctcaaaa--aataaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102153210 29 + 121039945 aagagtgaaactccatctcaaaa--aataaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351575 31 - 171882078 aagagcaaaactccatctcaaaaagagaaaa
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21071238 31 -  24206276 aagagtgaaactccatctcaaaaagagaaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       307650 31 -   1458659 aagagcaaaactccatctcaaaaagagaaaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7480035 29 -   9444221 gagag--aaactccgtctctgaaaaaaTGCA
i colAng1.NW_012112253v1    C 0 C 0
s otoGar3.GL873530            6771897 21 -  36342412 -agagtg-------tctttaaaa--aacaaa
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 931297 471 - 119751181 I
e proCoq1.NW_012149419v1       655147 16 -   2566024 I
e aotNan1.NW_018511953v1       748559 124 -   3745603 I
e mm10.chr9                  55186769 3974 + 124595110 I
e calJac3.chr10              18020475 831 + 132174527 I
e dasNov3.JH569975              55210 427 -   2180720 I
e canFam3.chr30                 59524 177 -  40214260 I
e cebCap1.NW_016107979v1       302874 47 -   1024465 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C
e saiBol1.JH378276             517611  0 -   3282555 C

a score=9647.000000
s hg38.chr15_KI270850v1_alt    199091 4 +    430880 ---aata
s panTro5.chr15              18008768 4 -  83230942 ---aata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17235032 4 -  99763055 ---aata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297707 4 +    378907 ---aata
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102153239 4 + 121039945 ---aata
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351606 4 - 171882078 ---aaga
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21071269 4 -  24206276 ---aaga
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       307681 4 -   1458659 ---aaga
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7480064 4 -   9444221 ---TGTG
i colAng1.NW_012112253v1    C 0 C 0
s proCoq1.NW_012149419v1       655163 7 -   2566024 TTTAATA
i proCoq1.NW_012149419v1    I 16 C 0
s otoGar3.GL873530            6771918 4 -  36342412 ---aaTA
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 931297 471 - 119751181 I
e aotNan1.NW_018511953v1       748559 124 -   3745603 I
e mm10.chr9                  55186769 3974 + 124595110 I
e calJac3.chr10              18020475 831 + 132174527 I
e dasNov3.JH569975              55210 427 -   2180720 I
e canFam3.chr30                 59524 177 -  40214260 I
e cebCap1.NW_016107979v1       302874 47 -   1024465 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457 0 -   6271500 C
e rheMac8.chr7               60364078 0 + 169600520 C
e saiBol1.JH378276             517611 0 -   3282555 C

a score=-1993.000000
s hg38.chr15_KI270850v1_alt    199095 3 +    430880 aaa
s panTro5.chr15              18008772 3 -  83230942 aaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17235036 3 -  99763055 aaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297711 3 +    378907 gaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102153243 3 + 121039945 aaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351610 3 - 171882078 ata
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21071273 3 -  24206276 aaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       307685 3 -   1458659 ata
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7480068 3 -   9444221 TAA
i colAng1.NW_012112253v1    C 0 C 0
s proCoq1.NW_012149419v1       655170 1 -   2566024 a--
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6771922 1 -  36342412 A--
i otoGar3.GL873530          C 0 I 8
s canFam3.chr30                 59701 3 -  40214260 AAA
i canFam3.chr30             I 177 C 0
e micMur3.chr3                 931297 471 - 119751181 I
e aotNan1.NW_018511953v1       748559 124 -   3745603 I
e mm10.chr9                  55186769 3974 + 124595110 I
e calJac3.chr10              18020475 831 + 132174527 I
e dasNov3.JH569975              55210 427 -   2180720 I
e cebCap1.NW_016107979v1       302874 47 -   1024465 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457 0 -   6271500 C
e rheMac8.chr7               60364078 0 + 169600520 C
e saiBol1.JH378276             517611 0 -   3282555 C

a score=5005.000000
s hg38.chr15_KI270850v1_alt    199098 1 +    430880 a
s panTro5.chr15              18008775 1 -  83230942 a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17235039 1 -  99763055 a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297714 1 +    378907 a
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102153246 1 + 121039945 a
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351613 1 - 171882078 a
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21071276 1 -  24206276 a
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       307688 1 -   1458659 a
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7480071 1 -   9444221 a
i colAng1.NW_012112253v1    C 0 C 0
s canFam3.chr30                 59704 1 -  40214260 A
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              55637 1 -   2180720 a
i dasNov3.JH569975          I 427 C 0
e micMur3.chr3                 931297 471 - 119751181 I
e proCoq1.NW_012149419v1       655171 0 -   2566024 C
e aotNan1.NW_018511953v1       748559 124 -   3745603 I
e mm10.chr9                  55186769 3974 + 124595110 I
e calJac3.chr10              18020475 831 + 132174527 I
e cebCap1.NW_016107979v1       302874 47 -   1024465 I
e otoGar3.GL873530            6771923 8 -  36342412 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457 0 -   6271500 C
e rheMac8.chr7               60364078 0 + 169600520 C
e saiBol1.JH378276             517611 0 -   3282555 C

a score=60574.000000
s hg38.chr15_KI270850v1_alt    199099 12 +    430880 agaaaTAGAACC
s panTro5.chr15              18008776 12 -  83230942 agaaatagaacc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17235040 12 -  99763055 agaaaTAGAACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297715 12 +    378907 agaaatagaacc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102153247 12 + 121039945 agaaaTAGAACC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351614 12 - 171882078 agaaatagaacc
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21071277 12 -  24206276 agaaatagaacc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       307689 12 -   1458659 agaaatagaacc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7480072 12 -   9444221 agaaatagaacc
i colAng1.NW_012112253v1    C 0 C 0
s saiBol1.JH378276             517611 12 -   3282555 AAGAATATAACC
i saiBol1.JH378276          C 0 I 10
s proCoq1.NW_012149419v1       655171 12 -   2566024 acaaaaacaacc
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6771931 12 -  36342412 GTACAAATAACT
i otoGar3.GL873530          I 8 C 0
s canFam3.chr30                 59705 12 -  40214260 AAAAATTGTCCT
i canFam3.chr30             C 0 I 8
s dasNov3.JH569975              55638 12 -   2180720 agaaatagaata
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 931297 471 - 119751181 I
e aotNan1.NW_018511953v1       748559 124 -   3745603 I
e mm10.chr9                  55186769 3974 + 124595110 I
e calJac3.chr10              18020475 831 + 132174527 I
e cebCap1.NW_016107979v1       302874 47 -   1024465 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=94606.000000
s hg38.chr15_KI270850v1_alt    199111 23 +    430880 TTA--TCAGTACCTGT---AGCACCCTC-
s panTro5.chr15              18008788 23 -  83230942 tta--tcagtacctgt---agcaccctc-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17235052 23 -  99763055 TTA--TCAGTACCTGT---AGCACCCTC-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297727 23 +    378907 tta--tcagtacctgt---agcaccctg-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102153259 23 + 121039945 TTA--TCAGTACCTGT---AGCACCCTC-
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351626 23 - 171882078 tta--tcagtacctgt---agcactctg-
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21071289 23 -  24206276 tta--tcagtacctgt---agcactctg-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       307701 23 -   1458659 tta--tcagtacctgt---agcactctg-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7480084 23 -   9444221 tta--tcagcacctgt---agtaccttg-
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18021306 22 + 132174527 TTT--TCAGTCCTTGT----ACCCCTGG-
i calJac3.chr10             I 831 C 0
s saiBol1.JH378276             517633 25 -   3282555 TTTAATCAGTCCTTGT---AACCCCTGA-
i saiBol1.JH378276          I 10 C 0
s proCoq1.NW_012149419v1       655183 23 -   2566024 tta--tcagtacctta---gaagccccc-
i proCoq1.NW_012149419v1    C 0 I 2
s otoGar3.GL873530            6771943 22 -  36342412 TTG--TCTGTACCTTC---AAAGCCCG--
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 59725 26 -  40214260 TCA--TCAGGACCTTTGAAAGCCCCCTG-
i canFam3.chr30             I 8 C 0
s dasNov3.JH569975              55650 24 -   2180720 tta--tcagtactttg---aaatcccttg
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 931297 471 - 119751181 I
e aotNan1.NW_018511953v1       748559 124 -   3745603 I
e mm10.chr9                  55186769 3974 + 124595110 I
e cebCap1.NW_016107979v1       302874 47 -   1024465 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=563365.000000
s hg38.chr15_KI270850v1_alt    199134 57 +    430880 TGTGCCCCTCCCTTGTCATGTCCTCTTtggga-ggtatcttgaagggaatgtgacatc
s panTro5.chr15              18008811 57 -  83230942 tgtgcccctcccttgtcatgtcctctttggga-ggtatcttgaagggaatatgaaatc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17235075 57 -  99763055 TGTGCCCCTCCCTTGTCATGTCCTCTTtggga-ggtatcttgaagggaatatgaaatc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297750 57 +    378907 tgtgcccctcccttgtcatgtcctctttggga-ggtatcttgaagggaatgtgacatc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102153282 57 + 121039945 TGTGCACCTGCCTTGTCATGTCCTCTTtggga-ggtatcttgaagggaatatgacatc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351649 57 - 171882078 tgtgcccctcccttgtcatgtcctctttggga-ggtatcttgaaaggaatatgaaata
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21071312 57 -  24206276 tgtgcccctcccttgtcatgtcctcttTGGGT-GGTATCTTGAAAGGAATATGAAATA
i chlSab2.chr29             C 0 I 139
s manLeu1.NW_012105520v1       307724 57 -   1458659 tgtgcccctcccttgtcatgtcctctttggga-ggtatcttgaagggaatatgaaatc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7480107 57 -   9444221 tgtacccctcccttgtcatgtcctctttggga-ggtatcttgaagggaatatgaaatc
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18021328 57 + 132174527 TGTGCCCCACCCTTGTCATGTCCTCTTTGAGA-GAGAACTTTATGGGAATAtgaaatt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             517658 57 -   3282555 TGTGCCCCTCCCTTGTCACGTCCTCTTTGAGA-GATAActttatgggaatatgaaatt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       302921 57 -   1024465 TGTGCCCCTCCCTTGTCACGTCCTCTTTGAGA-GATAACTTTGTGGGAATAtgaaatt
i cebCap1.NW_016107979v1    I 47 C 0
s aotNan1.NW_018511953v1       748683 57 -   3745603 TGTGCCCCTCCCTTGTCATGTCCTCTTTGAGA-GATAActttatgggaatatgaaatt
i aotNan1.NW_018511953v1    I 124 C 0
s micMur3.chr3                 931768 57 - 119751181 tgtgcccttcccctgtcacttcctccttggga-ggtatctttaagggaatatgaaatc
i micMur3.chr3              I 471 C 0
s proCoq1.NW_012149419v1       655208 57 -   2566024 tgtgcccttaccctgtcacttcctccttggga-ggtatctttaagggcatatggaatc
i proCoq1.NW_012149419v1    I 2 C 0
s otoGar3.GL873530            6771965 53 -  36342412 -----CCTTCCCCCATGACTTCCTTCTGGGAAGGgtgtctttaaggaaatgtaaaatc
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 59751 57 -  40214260 TATGTCCCTGCCCTCTCACTTCTTTCTCAAGA-Gatctctttaaggaaatataaaatg
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              55674 56 -   2180720 tgtgcttttcttctgtcacctcctcctAggga-ggtatctttcaggg-acatgacatc
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=4816733.000000
s hg38.chr15_KI270850v1_alt    199191 453 +    430880 ttggccaggaaactggaggatttgtgactgcaggtggtgttttcattat-tttttcctgctgtagttagaact-tcagggaggggatgatct-gggaggtaaatggctgaaatgctattggatttgtgtttgtggcccatggctcctgataccag-aaagaagggccttttctggggttgg----agtatttcttaagaggcctgggaagaatgtgattgccttgagctaactgaccttctgaagaggaccttaaactgaattgccaagttatt-agtattgggattcacagactttggagaatagcaggtatgactcagaaa----gatttacaggaa-agagccagaaca--atatgtttatggcctctgatgtccgcagtgacaacttgagagtcgtgaataataagcaaaattgaacttgagataaagtataacacaaagaTGGG-AGTGACTGCAGGAGGGAATG-----
s panTro5.chr15              18008868 453 -  83230942 ttggccaggaaactggaggatttgtgactgcaggtggtgttttcattat-tttttcctgctctagttagaact-tcagggaggggatgattt-gggaggtaaatggctgaaatgctattggatttgtgtttgtggcccatggctcctgataccag-acagaagggccttttctggggttgg----agtatttcttaagaggcctgggaagaatgtgattgccttgagctaactgaccttctgaagaggaccttaaactgaattgccaagttatt-agtattgggattcacagactttggagattagcaggtatgactcagaaa----gatttacaggaa-agagccagaaca--atatgtttatggcctctgatgtccacagtgacaacttgagagtcgtgaataataagcaaaattgaacttgagataaagtataacacaaagaTGGG-AGTGACTGCAGGAGGGAATG-----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17235132 453 -  99763055 ttggccaggaaactggaggatttgtgactgcaggtggtgttttcattat-tttttcctgctctagttagaact-tcagggaggggatgattt-gggaggtaaatggctgaaatgctattggatttgtgtttgtggcccatggctcctgataccag-acagaagggccttttctggggttgg----agtatttcttaagaggcctgggaagaatgtgattgccttgagctaactgaccttctgaagaggaccttaaactgaattgccaagttatt-agtattgggattcacagactttggagattagcaggtatgactcagaaa----gatttacaggaa-agagccagaaca--atatgtttatggcctctgatgtccacagtgacaacttgagagtcgtgaataataagcaaaattgaacttgagataaagtataacacaaagaTGGG-AGTGACTGCAGGAGGGAATG-----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       297807 452 +    378907 ttggccaggaaactggaggattcgtgactgcaggtggtgttttcattat-tttttcttgctgtagttagaact-tcagggaggggatgatct-gggaggtaaatggctgaaatgctattggatttgtgttggtggcccatggctcctgatagcag-aaagaagggccttttctggggttgg----agtatttcttaagaggcctgggaagaatgtgattgccttgagctaactgaccttctgaagaggaccttaaactgaattgccaagttatt-agtattgggattcacagactttggagaatagcaggtatgactcagaaa----gatttacaggaa-agagccagaaca--atatgtttatggcctctgatgtccgcagtgacaacttgagagtcgtgaataataagcaaaattgaac-tgagataaagtataacacaaagaTGGG-AGTGACTGCAGGAGGGAATG-----
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102153339 453 + 121039945 ttggccaggaaactggaggattcgtgactgcaggtggtgtcttcataat-tttttcctgctgtagttagaact-tcatggaggggatgatct-gggaggtaaatggctgaaatgctattggatttgtgtttgtggcccgtggctcctgataccag-aaagaagggccttttctcgggttgg----agtatttcttaagaggcctgggaagaatgtgattgctttgagctaactgaccttctgaagaggaccttaaactgaattgccaagttatt-agtatcgggattcacagactttggagaatagcaggtatgactcagaaa----gatttacaggaa-agagccagaaca--atatgtttatggcctctgatgtccacagtgacaacttgagagtcatggataataagcaaaatggaacttgagataaagtataacacgaagaTGGG-ATTGACTGCAGGAGGGAATG-----
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107351706 455 - 171882078 ttggccaagaaactggaggatttgtgactgcaggtggtgttttcattat-tttttcctgctctagttagaact-ttagggaggggatgatct-gggaggtaaatggccgaaattctactggatttgtgtttgtggcccatggctcctgatgccag-aaagaagggccttttctggggttgg----agtatttcttaagaggccttggaagaaggtgattgccttgagctaactgaccttctgaagaggaccttaaactgaaTTGCCAAGTTATT-AGTATCGGGATTCACAGTGTTTGGAGAATAACAGGTATGACTCAGAAA----GATTTGcaggaa-agagccagaacaaaatatatgtatggcctctgatgtccactgtgacatgttgagagtcatgaataataagcaaaatgaaacttgagataaagcataacacaaagaTGGG-AGTGAGGGCAGGAGGGAATG-----
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21071508 452 -  24206276 ttggccaagaaactggaggatttgtgactgcaggtggtgttttcattat-tttttcctgctctagttagaact-tcagggaggggatgatct-gggaagtaaatggccgaaattctactggatttgtgtttgtggcccatgg---ctgatgccag-aaagaagggccttttctgtggttgg----agtatttcttaagaggcctgggaagaatgtgattgccttgagctaactgaccttctgaagaggaccttaaactgaaTTGCCAAGTTATT-AGTATCGGGATTCACAGAGTTTGGAGAATAGCAGGTATGACTCAgaaa----gattcacaggaa-agagccagaacaaaatatatgtatggcctctgatgtccactgtgacatgttgagagtcatgaataataagcaaaatggaacttgagataaagcataacacaaagaTGGG-AGTGAGGGCAGGAGGGAATG-----
i chlSab2.chr29             I 139 C 0
s manLeu1.NW_012105520v1       307781 454 -   1458659 ttggtcaggaaactggaggattcatgactgcaggtggtgttttcattat-tttttcctgctctagttagaact-ttagggaggggatgatct-ggggggtaaatgactgaaatgctattggatttgtgtttgtggcccatggctcctgatgccag-aaagaagggccttttctggggttgg----agtatttcttaagaggcctgggaagaatgtgattgccttgagctaactgaccttctgaagaggaccttaaactgaattgccaagttatt-agtaacaggattcacagagtttggagaatagcaggtatgactcagaaa----gatttgcaggaa-agagccagaacaaaatatatgtatggcctctggtgtccactgtgacatgttgagagtcatgaataataagcaaaatgaaacttgagatAAAGCAT-ACACAAAGATGGG-AGTGAGGGCAGGAGGGAATG-----
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7480164 455 -   9444221 ttggccaggaaacgggaggattcgtgactgcaggtggtgttttcattat-tttttcctgctctagttagaact-tcagggagaggacgatct-gggaggtaaatggctgaaattctgttggatttgtgtttgtggtccatggctcctgataccag-aaagaagggccttttctggggttag----agtatttcttaagaggcctgggaagaatgtgattgccttgagctgactgactttctgaagaggaccttaaactgaaTTGCCAAGTTATT-AGTATCGGGATTCACAGACTTTGGAGAACAGCAGGTATGACTCGGAAA----GATGTacaggaa-ggagccagaacaatatatatttatggcctctgatgtccacagtgacaacttgagcatcatgaatagtaagcaaaatggaacttgagataaagtataacacaaagatggg-aatGAGGGCAGGAGGGTATA-----
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18021385 459 + 132174527 ctggccaggaaactggaggatttgtgactgcaggtggtgttttcattat-tttttcctgctctaggtaaaact-tcagggagggcatgctctggggaggtaaatggctgaaattctattggatttctgtttctggaccatggttcctgataccag-aaagaagggccttttctgggcttggagttagtttttcttaagaggccagggaagaaTGTGATTGCCTTGAGC-AACTGCTCTTCTGAAGAGGACCTTAAACTGAATTGCCAAGTTATT-AGTATCGGGATTCACAGACTTTGGAGGATAGCAGGTATGCCTTGGAAA----GATTTACAGGAA-GGAACCAGAACAATATATATTTGTGGCATCTGATGTCCACAGTGATAACTTTAGAGTCATGAATATTAAGAAAAATGGAACTTAAGATAAAGCATAACACAAAGATGGG-AGTGAGGGCAGGAGGGAATG-----
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             517715 455 -   3282555 ctggccaggaaactggaggattcgtgactgcaggtggtgttttcattat-tttttcctgctctaggtagaact-tcagggaggggacgatct-gggaggtaaatggctgaaattctattggatttctgtttctggaccatggctcctgataccag-aaagaagggccttttctggggttgg----agtttttcttaagaggcctgggaagaatgtgattgccttgagctaactgaccttctgaagaggaccttaaactgaattgccaagttatt-agtatcgggattcacagactttggaggatagcaggtatgccttggaaa----gatttacaggaa-ggagccagaacaatatatatttatggcgtctgatgtccatagtgacaagtttagagtcatgaatattaagaaaaatggaacttgagatAAAGCATAACACCAAGATGGG-AGTGAGGGCAGGAGGGAATC-----
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       302978 455 -   1024465 ctggccaggaaactggaggattcgtgactgcaggtggtgttttcattat-tttttcctgctctaggtagaact-tcagggaggggacgatct-gggaggtaaatggctgaaattctgttggatttctgtttctggaccatggctcctgataccag-aaagaagggcgttttctggggttgg----agtttttcttgagaggcctgggaagaatgtgattgccttgagctaactgaccttctgaagaggaccttaaactgaattgccaagttatt-agtatcgggattcacagactttggaggatagcaggtatgccttggaaa----gatttacaggaa-ggagccagaacaatatatatttatggcgtctgatgtccacagtgacaactttagagtcatgaatattaagaaaaatggaacttgagatAAAGCATAACAGAAAGATGGG-AGTGAGGGCAGGAGGGAATT-----
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       748740 455 -   3745603 ctggccaggaaactgtaggattcatgactgcaggtggtgttttcattat-tttttcctgctctaggtagaact-tcagggaggggacgatct-gggaggtaaatggctgaaattctattggatttctgtttctggaccatggctcctgataccag-aaagaagggccttttctggggttgg----agtttttcttaagaggcctgggaagaatgtgattgccttgagctaactgaccttctgaagaggaccttaaactgaattgccaagttatt-agtatcgggattcacagactttggaggatagcaggtatgccttggaaa----gatttacaggaa-ggagccagaacaatatatgtttatggcgtctgatgtccgcagtgacaactttagagtcatgaatattaagaaaaatggaacttgagataaagcataacacaaagaTGGG-AGTGAGGGCAGGAGGGAATG-----
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 931825 430 - 119751181 ttggccaggaaactggaggacttgtgactgcaggtagtgttttca-tat-attttcctactctaggtaaaaacttcagggaggggatgatct-gggaggtaaatggctgaaattctattggatttgtgtttccgaaccatggcttctgataccagaaaggaagcaccttttctagggttgg----agtatttcttaagaggcctgggaagaatgtgattgccttgagctaactgaccttatgaagaggaccttaaactgaattgccaagttatt-agtatcagg---------ctttggaagatagcaggtaagacacaggaa-----------------ggagTTAGAATAATATatatttatggcctc-gatgtccagagtgacagcttgagagccatgaatgataagaaaaatggaatttgagat-----ataacacaaggCTGGGAAATGAAGGCAGGAGGGAATG-----
i micMur3.chr3              C 0 I 27
s proCoq1.NW_012149419v1       655265 438 -   2566024 ttggccagaaaactggaggacttgtgactgcaggtagtgtttgcattat-tttttcctactctaggtagaaac-tcagggaggggacgatct-gggaggtaaatggctgaaattctattggatttgtttttctggaccatggcttctgataccag-gaggaagggccttttctagggttgg----agtatttcttaagaggcctgggaagaatgtgatcaccttgagctaaccgaccttatgaagaggaccttaaactgaattgccaagttatt-agtatcaggattcacagactttggaggatagcaggtatgacacaggaa-----------------ggagccagaacaatatgtatttatggcctt-gatgtccacagtgacaatttgagagccatgaatgataagaaaaatggaacttgagat-----ataacagaaggCTGGGAAATGGAGGCAGGAGGGAAGG-----
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6772018 433 -  36342412 ttggccaggaaacgagaggacttgtgactgcaggtagtgttttcattat--ttttcctagtctaggtggaact-tcaggcagggaacaatct-gggacatagatggctgaaattctgttggatttgcatttcgggaacatggctcctgataccag-aaagaagggccttttctagtattgg----agtatttcttacaatgcctgggaagaatgtgattgccttgagctaactgacattatgaaaaagaccttaaactgaattgctgagtcatt-agtattgggattcacagattttggaggatagcaggtatgactcagaaagaaAGGTTCACAGAAAGGGACCCAGAACCATACATATTTATGTCCTCAGATGTCCACAGTGACAACTTG----------------AAAAAAATGGAACTTGAGGT-----AT-----AAGACTGGG-AATAGGGGTAGGAGAGAATG-----
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 59808 418 -  40214260 ttgaccaggcaactgaaagacttgtggctgcacttaatgttttcatggt-attttcataatctagatagaact-tcagggaggggacgatct-ggaaggtaaatagctgaaattctgt---atttgtctttctggaccatgactccc--tgccag------------tttgctagggctgg----agtatttgttaaaaggactaggaataatatgattgctctgaactaagtgaccGT-----------TGCAAACTGAACTACTGAGTTATTAAGTATCAGGATTCACAGATTTTGG--------AGGTATGACTCAGAAAGAAGGATTTACAGGAA-GGAGCGTCaaca----gtgtttgtggcctcagatgtccatggtgacaacttgaaagtcataagtaataag-agaatggagcttgagataaaatataacacaagTTTGGGGATTGTGGACCTACTAGA--------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              55730 438 -   2180720 ttggccaggaaattgaaggacttatgactgcaggtcgtgttttcattatttttttcctgctctaggtagattt-tcagggagggaaccattt-gggaggtaaaagactgaaa-----ctggatttgggtttctggaccagggcttctgatcctag-aaagaagggtctttgctagggttgg----attatttcttaagaggcctgtaaagaatgttattgccctgagctaactggctttatggagatgaccttgaactgaattgccaagttatt-ag-----ggatttacagactttgaaggatagcaggtatgactc--cag----gattcacaggaa-ggagtatgaaca----atatttatggtgtcagatgtccacagtgata--ctggaagagatgaataaaaaataaaatgga-cttgagata----ataacacaaggaTGGG-GATGAGGGCAGGAAGGATTGGAATG
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457   0 -   6271500 C
e rheMac8.chr7               60364078   0 + 169600520 C

a score=250006.000000
s hg38.chr15_KI270850v1_alt    199644 34 +    430880 TGCCCT---------GGTCAGCAACTTGGTAAATCCAACTTGC
s panTro5.chr15              18009321 34 -  83230942 TGCCCT---------GGTCAGCAACTTGGTAAATCCAACTTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17235585 34 -  99763055 TGCCCT---------GGTCAGCAACTTGGTAAATCCAACTTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       298259 34 +    378907 CGCCCT---------GGTCAGCAACTTGGTAAATCCAACTTGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102153792 34 + 121039945 CGCCCT---------GGTCAGCAACGTGGTAAATCCAACTTGC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352161 34 - 171882078 CAACCT---------GGTCAGCAACTTGACAAATCCAACTTGC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21071960 34 -  24206276 CAACCT---------GGTCAGCAACTTGGCAAATCCAACTTGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       308235 34 -   1458659 CAACCT---------GGTCAGCAACTTGGCAAATCCAACTTGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7480619 34 -   9444221 CGACCT---------GGTCAGCAACTTGGTAAATCCAACTTGC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18021844 34 + 132174527 CGACCT---------GGTCAGCAAATTGGTAAATCCAACGTGC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             518170 34 -   3282555 CGACCT---------GGTCAGCACTTTGGTAAATCCGACTTGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       303433 34 -   1024465 CCACCT---------GGTCAGCAAATTGGTAAATCTAACTTGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       749195 33 -   3745603 CGACCT---------GGTCAGCAA-TTGGTAAATCCAACTTGC
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       655703 27 -   2566024 ---------------GGACAGCAGCTTGGTAGATCCATTTTG-
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6772451 28 -  36342412 ---------------GGACAACAGCTTGGCAAATCCATTTTGC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 60226 30 -  40214260 ----TT---------CGTCTGCAGCTAGGCTAATGTGTTATGC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              56168 43 -   2180720 TGACCTGTTGGACTAGGTTGGCAATTTGGAAAGTCTGTTGTGC
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 932255 27 - 119751181 I
e mm10.chr9                  55186769 3974 + 124595110 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=196518.000000
s hg38.chr15_KI270850v1_alt    199678 19 +    430880 TGTA-CTTTTAAGGAAGTCG
s panTro5.chr15              18009355 19 -  83230942 TGTA-CTTTTAAGGAAGTCG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17235619 19 -  99763055 TGTA-CTTTTAAGGAAGTCG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       298293 19 +    378907 TGTA-CTTTTAAGGAAGTCG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102153826 19 + 121039945 TGTA-CTTTTAAGGAAgctg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352195 19 - 171882078 TGTA-CTTTTAAGGAAGTCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21071994 19 -  24206276 TGTA-CTTTTAAGGAAGTCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       308269 19 -   1458659 TGTA-CTTTTAAGGAAGTCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7480653 19 -   9444221 TGTG-CTTTTAAGGAAGTTG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18021878 19 + 132174527 TGTG-CTTTTAAGGAAGTCA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             518204 19 -   3282555 TGTG-CTTTTAAGGAAGTCA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       303467 19 -   1024465 TGTG-CTTTTAAGGAAGTCA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       749228 19 -   3745603 TGTG-CTTTTAAGGAAGTCA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 932282 19 - 119751181 TATG-CTTTTAAGGAAGTGg
i micMur3.chr3              I 27 C 0
s proCoq1.NW_012149419v1       655730 19 -   2566024 TATG-CTTTTAAGGAAGTGG
i proCoq1.NW_012149419v1    C 0 I 15
s otoGar3.GL873530            6772479 19 -  36342412 TATG-CTTTTAAGGAAATGT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 60256 20 -  40214260 TGTGTTTTTTAAAGAGGTGG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              56211 19 -   2180720 TATG-TTTTAAGGAAAATAG
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=125981.000000
s hg38.chr15_KI270850v1_alt    199697 19 +    430880 -------TTTTCAGATGTTAcaggca
s panTro5.chr15              18009374 19 -  83230942 -------TTTTCTGATGTTAcaggca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17235638 19 -  99763055 -------TTTTCTGATGTTAcaggca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       298312 19 +    378907 -------TTTTCAGATGTTAcaggca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102153845 19 + 121039945 -------ttttctgatgttacaggca
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352214 19 - 171882078 -------TTTTCTGATGTTAcaggca
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21072013 19 -  24206276 -------TTTTCTGATGTTAcaggca
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       308288 19 -   1458659 -------TTTTCTGATGTTACAGGCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7480672 19 -   9444221 -------TTGTCTGATGTTAcaggca
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18021897 19 + 132174527 -------TTTTCTGATGTTAcagaca
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             518223 19 -   3282555 -------TTTTCTGATGTTATaggca
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       303486 19 -   1024465 -------TTTTCTGATGTTAcaggca
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       749247 19 -   3745603 -------TTTTCTGATGTTAcaggca
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 932301 19 - 119751181 -------ttttctggcttttcaggca
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6772498  5 -  36342412 ----------------TTTTC-----
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 60276 19 -  40214260 -------TGGtctggtttttcaagcc
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              56230 17 -   2180720 TGTCCTATTTTCAGATC---------
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       655749 15 -   2566024 I
e mm10.chr9                  55186769 3974 + 124595110 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=155436.000000
s hg38.chr15_KI270850v1_alt    199716 17 +    430880 acatcagagttactgaa
s panTro5.chr15              18009393 17 -  83230942 acatcagaattactgaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17235657 17 -  99763055 acatcagaattactgaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       298331 17 +    378907 acatcagagttactgaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102153864 17 + 121039945 acatcagaattactgaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352233 17 - 171882078 acatcagagttactgac
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21072032 17 -  24206276 acatcagagttactgac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       308307 17 -   1458659 AGCTCAgagttactgac
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7480691 17 -   9444221 acatcagaattaccgaa
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18021916 17 + 132174527 acatcagaattactgaa
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             518242 17 -   3282555 acatcagaattactgaa
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       303505 17 -   1024465 acatcagaattgctgca
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       749266 17 -   3745603 acatcagaattactgaa
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 932320 17 - 119751181 acatctgaattatcgaa
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       655764 17 -   2566024 acatttgaattattgaa
i proCoq1.NW_012149419v1    I 15 C 0
s otoGar3.GL873530            6772503  8 -  36342412 ---------TGACTGAA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 60295 17 -  40214260 gtatgtgaactactgag
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              56247 17 -   2180720 ATATCTGAATTACTGAT
i dasNov3.JH569975          C 0 I 591
e mm10.chr9                  55186769 3974 + 124595110 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=241671.000000
s hg38.chr15_KI270850v1_alt    199733 22 +    430880 ttgaattctgagg------tagtacttt
s panTro5.chr15              18009410 22 -  83230942 ttgaattctgagg------tagcacttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17235674 22 -  99763055 ttgaattctgagg------tagcacttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       298348 22 +    378907 ttgaattctgagg------tagtacttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102153881 22 + 121039945 ttgaattctgagg------tagtacttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352250 22 - 171882078 ttgaattcctagg------tagtacttt
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21072049 22 -  24206276 ttgaattcctagg------tagtacttt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       308324 22 -   1458659 ttgaattcctagg------tagtacttt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7480708 22 -   9444221 ttgaattctgagg------tagtacttt
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18021933 22 + 132174527 ttgaattctgagg------tagtacttt
i calJac3.chr10             C 0 I 300
s saiBol1.JH378276             518259 22 -   3282555 ttgaattctgaag------tagtacttt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       303522 22 -   1024465 ttgaattctgagg------tggtacttt
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       749283 22 -   3745603 ttgaattctgagg------tagtacttt
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 932337 28 - 119751181 ttgaattgtgagggaatattaatacttt
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       655781 28 -   2566024 ttgaattgtgagggaacattaatacttt
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6772511 22 -  36342412 TTGAATTGTGAAG------TAATACTTT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 60312 22 -  40214260 ctgaattctgagg------tggtatttt
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              56855 22 -   2180720 TTTAATTCTAAAG------TAATACTTT
i dasNov3.JH569975          I 591 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=3281955.000000
s hg38.chr15_KI270850v1_alt    199755 371 +    430880 aagaaaggtctacttagataaggttaggttcatttagagaataa----------------tagc--------caggatt-------------------------------------------------------------------gggaagagattcttttccatgtcctagg--atagctggtgaaattatggatttggagaggaaaacat-gggggttctggt-tcatgatagattgtcttcaactatttgaaggagtatgtatatggaagcattag------tttttatttgtt-tttggtgaagacagggcataaaactagaac-taataagtcaaattacaaagaggt-gattttcaactcaatgtaa-ggaagtgacttgtaactatttagacccatcTGGTGATGTagtctttgaaaactagaatgttcttcatctttaagaataacttagaaggct-gagatgttaaa
s panTro5.chr15              18009432 371 -  83230942 aagaaaggtctacttagataaggttaggttcatttagagaataa----------------tagc--------caggatt-------------------------------------------------------------------gggaagagattcttttccatgtcctagc--atagctggtgaaattgtggatttggagaggaaaacat-gggggttctggt-tcatgatagattgtcttcaactatttgaaagagtatgtatatggaagcattag------tttttatttgtt-tttggtgaagacagggaataaaactagaac-tagtaagtcaaattacaaagaggt-gattttcaactcaatgtaa-ggaagtgacttgtaactatttagacccatcTGGTGATGTagtctttgaaaactagaatgttcttcatctttaagaataacttagaaggct-gagatgtcaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17235696 371 -  99763055 aagaaaggtctacttagataaggttaggttcatttagagaataa----------------tagc--------caggatt-------------------------------------------------------------------gggaagagattcttttccatgtcctagg--atagctggtgaaattgtggatttggagaggaaaacat-gggggttctggt-tcatgatagattgtcttcaactatttgaaagagtatgtatatggaagcattag------tttttattcgtt-tttggtgaagacagggaataaaactagaac-tagtaagtcaaattacaaagaggt-gattttcaactcaatgtaa-ggaagtgacttgtaactatttagacccatcTGGTGATGTagtctttgaaaactagaatgttcttcatctttaagaataacttagaaggct-gagatgtcaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       298370 371 +    378907 aagaaaggtctacttagataaggttaggttcatttagagaataa----------------tagc--------caggatt-------------------------------------------------------------------gggaagagattcttttccatgtcctagg--atagctggtgaaattgtggatttggagaggaaaacat-gggggttcagat-tcgtgatagattgtcttcaactatttgaaggagtatgtatatggaagcattag------tttttatttgtt-tttggtgaagacagggcataaaactagaac-taataagtcaaattacaaagaggt-gattttcaactcaatgtaa-ggaagtgacttgtaactatttagacccatctggtgatgaagtctttgaaaactagaatgttcttcatctttaagaataacttagaaggct-gagatgttaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102153903 371 + 121039945 aagaaaggtctacttagataaggttaggttcatttagagaataa----------------tagc--------caggttt-------------------------------------------------------------------gggaagagattcttttccatgtgctagg--atagctggtgaaattgtggatttggagaggaaaacat-gggggttctggt-tcatgatagctcgtcttcaactatttgaaggagtatgtatatggaaacattag------tttttatttgtt-tttggtgaagacagggcataaaactagaac-taataagtcaaattacaaagaggt-gattttcaactcaatgtaa-ggaagtgacttGTATTTATTTAGACCCATCTGCTGATGTAGTCTTTGAAGACTAGAATGTTCTTCATCTTTAAGAATAACTTCGAAGGCT-GAGATGTTAAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352272 373 - 171882078 aagaagggtctacttagacaaggataggttcatttagagaataa----------------tagc--------caggatt-------------------------------------------------------------------gggaagagattcttttccatgtcctagg--atagctggtgaaattgtggatttggagatgaaagcat-gggggttcaggt-tcatgatagcttgtcttcaactatttgaaaaagtatgtatatggaagcattagtttttatttttatttgtt-tttggtgaagacagggcataaaactagaac-taataagtcaaattacaaaggggt-gattttcaactcaatgtaa-ggaagtgacttgtaactatttagac----ctgGTGATGTAGTCTTTGATAAATAGAATATTCTTCATCCTTATGAATAACTTAGAAGGCT-GAGATGTTAAA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21072071 377 -  24206276 aagaaggatctacttagacaaggataggttcatttagagaataa----------------tagc--------caggatt-------------------------------------------------------------------gggaagagattcttttccatgtcctagg--gtagctgatgaaattgtggatttggagaggaaagcat-gggggttcaggt-tcatgatagcttatccttagctatttgaaaaagtatgtatatggaagcattagtttttatttttatttgtt-tttggtgaagacagggcataaaactagaac-taataagtcaaattacaaaggggt-gattttcaactcaatgtaa-ggaagTGACTTGTAACTATTTAGACCCATCTGGTGATGTAGTCTTTGATAAATAGAATGTTCTTCATCCTTAAGAATAACTTAGAAGGCT-GAGATGTTAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       308346 372 -   1458659 aagaagggtctacttagacaaggataggttcatttagagaataa----------------tagc--------caggatt-------------------------------------------------------------------gggaagagattcttttccatgtcctagg--atagctgatgaaattgtggatttggagaggaaagcat--ggggttcaagt-tcatgatagcttgtcttcaactatttgaaaaagtatgtatatggaagcattagtttttatttttatttgtt-tttggtgaagacagggtataaaactagaac-taataagtcaaattacaaaggggt-gattttcaactcaatgtaa-ggaagtgacttGTAACTATTTAGGC----CTGGTGATGTagtctttgataaatagaatattcttcatccttatgaataacttagaaggct-gagatgttaca
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7480730 365 -   9444221 aagaagggtctatttagataagtttaggttcatttagagaataa----------------tagc--------cagggtt-------------------------------------------------------------------gggaagagattctattctgtgtcctagg--atagctgatgaaattgtggatttggagaggaaaacgt-gggg------gt-tcatgatagcttgtcttcaactatttgaaggagtatgcacatgaaagcattag------tttttatttgtt-tttggtgaagacagggcataaagctagaac-taataagtcagattacagagaggt-gattttcaactcaatatga-ggaagTGACTTGTAACTATTTAGACCCATCTGGTGATGTAGTCTTTGAAAAACAGAATGTTCTTCATCCTTAAGAATAACTTAGAAGGCT-GAGATGTTAAA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18022255 355 + 132174527 aagaaaggtctatttagataagtttaggtttatttagagaatcg----------------tagc--------cacgatt-------------------------------------------------------------------gggaagagattgtattccatgtcctagg--acaggtggtgacattgtggatttggagag---aatatgggggg-----gt-tgatgttagcttgtcttcagctctttgaaggagcatatatatggaagcattat------tttttatttgtt-tttagtgaacacagggcacaaaactagaac-tagtaagtcaaattacaaagaggt-gattttcaactcaatatga-agTGATTTGTTGTAACTATTTAGACCCATCTGATGATGTA---------AAGTAGAATGTTCCTCATCCTTAAGAATAACTTAGAAGGCT-GAGTTATTAAA
i calJac3.chr10             I 300 C 0
s saiBol1.JH378276             518281 356 -   3282555 aagaaaggtctatttaggtaagttgaggtttatttagagaacct----------------cagc--------caggatt-------------------------------------------------------------------gggaagagattgtattccatgtcctaggatacaggtggtgacattgtggatttggagag---aatat-ggggg-----gt-tgatgttagcttgccttcaactgtttgaaggagcatgtatatggaagcattag------tttttatttgtt-tttggtgaacacagggcacaaaactagaac-tagtgagtcaaattacaaagaggtagtttttcaactcaatatga-agTGATTTGTTGTAACTATTTAGACCCATCTGGTGATGTa---------aagtagaatgtt-ctcatccttaagaataacttagaaggct-gagatgttaaa
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       303544 355 -   1024465 aagaaaggtctatttagataagcttaagtctatttagagaatca----------------tagc--------caggatt-------------------------------------------------------------------gggaagagattgtattccatgtcctagg--ataggtggtgatgttgtggatttggagag---aatat-ggggg-----gt-tgatgttagcttgtcttcaactatttgaaggagcatgtatatggaagcattag------tttttatttgtt-tttggtgaacacagggcacaaaactagaac-tagtaagtcaaattacaaaaaggtgatttttcaactcaatatga-agTGATTTGTTGTAACTATTTAGACCCATCTGGTGATGTA---------AAGTAGAATGTTCCTCATCCTTAAGAATAACTTAGAAGGCT-GAGATGTTAAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       749305 354 -   3745603 aagaaaggtctatttagataagtttaggtttatttagagaatca----------------tagc--------caggatt-------------------------------------------------------------------gggaagagattgtattccatgtcctagg--ataggtggtgacattgtggatttggagag---aatat-ggggg-----gt-tggtgttagcttgtcttcaactatttgaaggagcatgtacatggaagcattag------tttttacttgtt-tttggtgaacacagggcacaaaactagaac-tagtaagtcaagttacaaagaggt-gattttctactcaatatga-agTGATTTGTTGTAACTATTTAGACCCATCTAGTGATGTA---------AAGTAGAATGTTCCTCATCCTTAAGAATAACTTAGAAGGCT-GAGATGTTAAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 932365 367 - 119751181 aagaagggtttctttagacaaatttaagctcatttagagactag----------------tagc--------gagggtt--------------------------------------------------------------------ggaagagattctattttgtatcataag--atagctgcgtaaattgtggatttggagagaagaacat-gtggggtc--at-tcgtgatagcttgttttcaactatttgaaggactgaatacctggaagcattag-------tttgatttgtt-gttggtgaacacacggcataaaactagaac-aaataagtcaaattataaagaggc-gattttcaattcaatataa-ggaagtgatttgtaactatttagagcCATTTGGTGATGCAGTCTTTGAAAAAGAGAATGTTCTTCATCCTTTAGAGTAGCTTAGGAGGCC-AAGATGTTACA
i micMur3.chr3              C 0 I 1
s proCoq1.NW_012149419v1       655809 363 -   2566024 aagaagggtttcttgagacaaatttaggctcgtttagagactag----------------tagc--------cagggtc--------------------------------------------------------------------agaagagattctatttcatgtcctaag--atagctgcttaaattgtggatttggagagaacaaca---tgggat----t-tcatgatagcttgttttcaactatttgaaggactgagtacgtggaagcattag-------tttgatttgtt-gttggtgaacacagggcataaaactagaac-aaataagtcaaattataaagaagt-gattttcagttcaatataa-ggaagtgctttgtaactatttagagccttctggtgatgtagtctttcaaaaagagaatgttcctcgtcCTTAAGAATAGCTTAGGAGGCC-ACGATGTTAAA
i proCoq1.NW_012149419v1    C 0 I 147
s otoGar3.GL873530            6772533 443 -  36342412 AGGAAGGGTTTCTTCAGAAAAATTGAGGCTCATTTAGAGACAGGGTTGGCATAGTTGACATAGCTTATGATTGAAGGTTCTTGAAATCGCCCAAATAGGTGTGTATTGGTATCCTTTTCAGTTTTATTATTGTAGAGACTACTGTTGGGAAGAGATTCTTTTCCATGTCCTAAG--GTAGCTG-ATAAATTGTGGCTTtggagaaaagaatgt-gggggttc--atgtcatggtatcttgtcttcaactatttgaaagactgagtatgtggaagtattgg-------tttgtttgattcgttgttgaacacagggtataaaactagaactagttaagccaaattataacaagac-tattttcaattcagtttaa-agaaatgatttataactatttagagcCTTCTGGTGATGTAGTCTTTCAGAGAGAGAA---------TCCTTAGGA----------AGGCCAAAAATGTTAAA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 60334 350 -  40214260 gggaaggggttatccagacaaatataggttcatttagagaatag----------------gggc--------aaggatt-------------------------------------------------------------------tgaaagctat----ttccatgtcctaag--ataggtggttaaactgtaggtttggagagaagaacat-aggga--------tcatgagagcttgtcttcaactatttaaaggaatagttatgtggaagcttttg----------tctcggtt-tttgattaacacaaagcatgacattaaaac-tagtaagtcagactttaaagagat-gcttttcaactgagtatag-ggaagtga----taactatgtagagccatctggtgc--caatctttcaagagtagaatgttcctcatcattaaaagtatCTTGAAAGCCC-AAGGTATTGAA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              56877 298 -   2180720 --GAGAGG---------------------TTATTTAAAGAATGG----------------TAAC--------CAGGACT-------------------------------------------------------------------GGAAAGAGAG-------------CTATG--ATAGCTGGCTACATTATGGATTGGGAGAGGACAATAT-GG--------AT--------------------------TGAAACGTTGTGTATGTGGAAACGTTAA-------CTTGAGCTTTC-CTTGATGAACACAAGGCATAAAACT--AAT-AAGTAAA--AAACTGTAAGAAGGT-GATTTTCAACTCATTCTTATAAAAGTGATTTATAACTTTTTAGGACCATCTAGTGATATAATCTTGCAAAGATAGAATGTTCCTCATCATTCAGAATAGCTTGGAAAGCA-GAGATGTTGAA
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457   0 -   6271500 C
e rheMac8.chr7               60364078   0 + 169600520 C

a score=379373.000000
s hg38.chr15_KI270850v1_alt    200126 47 +    430880 tgg-gaagtcagataacttcatgagatccttgtagagcctgagagtct
s panTro5.chr15              18009803 47 -  83230942 tgg-gaaatcagataacttcatgagatccttgtagagcctgagagtct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17236067 47 -  99763055 tgg-gaaatcagataacttcatgagatccttgtagagcctgagagtct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       298741 47 +    378907 tgg-gaaatcagataacttcatgagatccttgtagagcctgagagtct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102154274 47 + 121039945 TGG-GAAATCAGATAACTTCATGAGATCCTTGTAGAGCCTGAGAGTCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352645 47 - 171882078 TGG-GAAATCAGATAACTTCATGAGATCCTTGGAGAGCCTGAGAGTCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21072448 47 -  24206276 TGG-GAAATCAGATAACTTCATGAGATCCTTGTAGAGCCTGAGAGTCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       308718 47 -   1458659 tgg-gaaatcagataacttcatgagatccttgtagagcctgagagtct
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7481095 47 -   9444221 TGG-GAAGTCAGATAACTTCATGAGATTTTTGTAGAGCGTGAGAGTCT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18022610 48 + 132174527 TGGAAAAATCAGGTGACTTCATGAGATCCTTGTAGAGCCTGAGAGACT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             518637 48 -   3282555 tggaaaaatcagatgacttcatgagatccttgtagagcctgagaGACT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       303899 48 -   1024465 TGGAAAAATCAGGTGATTTCATGAGATCCTTGTAGAGCCTGAGAGACT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       749659 48 -   3745603 TGGAAAAATCAGATGACTTCATGAGATCCTTGTAGAGCCTGAGAGACT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 932733 47 - 119751181 TGG-AAATCCAGATAACCTTATGAGCCCCTTGTGAAGCCTGAGAGTCT
i micMur3.chr3              I 1 I 81
s canFam3.chr30                 60684 37 -  40214260 ---------CTGGAAACCTCATGA--TCCTTGTGAACCTAAAGATCCT
i canFam3.chr30             C 0 I 2
s dasNov3.JH569975              57175 45 -   2180720 TTG-GAAATCAGATAACT--ATGAGATCCTTATAAATCCTGAGACTCT
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       656172 147 -   2566024 I
e mm10.chr9                  55186769 3974 + 124595110 I
e otoGar3.GL873530            6772976  0 -  36342412 C
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=403731.000000
s hg38.chr15_KI270850v1_alt    200173 66 +    430880 --CGTTCTGAGTTA-AAATATACTAAGGTAACTCAAACTTA-ATTTTACCAGTCACCCTCAACCTTTATT
s panTro5.chr15              18009850 66 -  83230942 --ggttctgaGTTA-AAATATACTAAGGTAACTCAAACTTA-ATTTTACCAGTCACCCTCAACCTTTATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17236114 66 -  99763055 --ggttctgaGTTA-AAATATACTAAGGTAACTCAAACTTA-ATTTTACCAGTCACCCTCAACCTTTATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       298788 66 +    378907 --CGTTCTGAGTTA-AAATATACTAAGGTAACTCAAACTTC-ATTTTACCAGTCACCCTCAACCTTTATT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102154321 66 + 121039945 --CATTCTGAGTTA-AAATATACTAAGGTGACTCAAACTTC-ATTTTACCAGTCACCCTCAACCTTCATT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352692 66 - 171882078 --GGTTCAGAGTTA-ACATATACTAAGGTAACTCAAACTTC-ATTTTACCAGTCACCCTCAATCTTTATT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21072495 66 -  24206276 --GGTTCAGAGTTA-ACATATACTAAGGTAACTCAAACTTC-ATTTTACCAGTCACCCTCAATCTTTATT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       308765 64 -   1458659 --ggttCAGAGTTA-ACATATACTAAGGTAACTCAAACTTC-ATTTTACCAGTCA--CTCAATCTTCATT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7481142 65 -   9444221 --GGTTCAGAGTTA-ATATATACTAAGGTAACTCAAACTTC-ATTTTAACAGTCACCCTCAACCTTT-TT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18022658 63 + 132174527 --GGTTCTAAGTTA-ATATATACTAAGGTAACTCAAACTTC----TTAACAGTCACCCTCAACGTTTTTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             518685 58 -   3282555 --GGTTCTGAGTTA-ATATATACTAAGGTAACTCAGACTTC----TTAACAATCACCCTCAA-----TCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       303947 63 -   1024465 --GGTTCTGAGTTA-ATATATACTAAGGTAACTCAAACTTC----TTAACAGTCACCCTCAACCTTTTTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       749707 63 -   3745603 --GGTTCTGAGTTA-ATATATACTAAGGTAACTCAAACTTC----TTAACAGTCACCCTCAACCTTTTTT
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr30                 60723 61 -  40214260 --GTTTTGGAGTTA---GTATGCCAAGATAACTCAAATTTCTATGTTCACAGTCATCCCCATCCTC----
i canFam3.chr30             I 2 C 0
s dasNov3.JH569975              57220 58 -   2180720 CAGTTTCTGAATAATATGCTCACTAAGGTAACTCAAACTTT-----TAACAGTTATCTTCAAC-------
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 932780 81 - 119751181 I
e proCoq1.NW_012149419v1       656172 147 -   2566024 I
e mm10.chr9                  55186769 3974 + 124595110 I
e otoGar3.GL873530            6772976  0 -  36342412 C
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=22025.000000
s hg38.chr15_KI270850v1_alt    200239  8 +    430880 T--TCCCCTC
s panTro5.chr15              18009916  8 -  83230942 T--TCCCCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17236180  8 -  99763055 T--TCCCCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       298854  8 +    378907 T--TCCCCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102154387  8 + 121039945 T--TCCCCTC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352758  8 - 171882078 T--TCCCCTC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21072561  8 -  24206276 T--TCCCCTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       308829  8 -   1458659 T--TCCCCTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7481207  8 -   9444221 T--CCCCCTC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18022721  9 + 132174527 T-CCCCCCTC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             518743  9 -   3282555 C-CCCCCTAC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       304010  9 -   1024465 C-CCCCCTTC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       749770 10 -   3745603 CTCCCCCCTC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6772976  8 -  36342412 --TTTTTTTT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 60784  5 -  40214260 -----CCCAC
i canFam3.chr30             C 0 I 8
e micMur3.chr3                 932780 81 - 119751181 I
e proCoq1.NW_012149419v1       656172 147 -   2566024 I
e mm10.chr9                  55186769 3974 + 124595110 I
e dasNov3.JH569975              57278  0 -   2180720 C
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=27448.000000
s hg38.chr15_KI270850v1_alt    200247 3 +    430880 CCT
s panTro5.chr15              18009924 3 -  83230942 CCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17236188 3 -  99763055 CCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       298862 3 +    378907 CCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102154395 3 + 121039945 CCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352766 3 - 171882078 CCT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21072569 3 -  24206276 CCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       308837 3 -   1458659 CCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7481215 3 -   9444221 CCT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18022730 3 + 132174527 CCT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             518752 3 -   3282555 CCC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       304019 3 -   1024465 CCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       749780 3 -   3745603 TCT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 932861 3 - 119751181 CCT
i micMur3.chr3              I 81 C 0
s otoGar3.GL873530            6772984 3 -  36342412 CCT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 60797 3 -  40214260 TTT
i canFam3.chr30             I 8 C 0
e proCoq1.NW_012149419v1       656172 147 -   2566024 I
e mm10.chr9                  55186769 3974 + 124595110 I
e dasNov3.JH569975              57278 0 -   2180720 C
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457 0 -   6271500 C
e rheMac8.chr7               60364078 0 + 169600520 C

a score=873756.000000
s hg38.chr15_KI270850v1_alt    200250 82 +    430880 GAAGAACTC-TTTTTATTTCTGTAAAATCTTGATTCCTGAGTTCCAGGGTACAGAGCTTATGGAAT---AGAGTCCccaggttttg
s panTro5.chr15              18009927 82 -  83230942 GAAGAACTC-TTTTTATTTCTGTAAAATCTTGATTCCTGAGTTCCAGGGTACAGAGCTTATGGAAT---AGAGTCCCCAGGTTTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17236191 82 -  99763055 GAAGAACTC-TTTTTATTTCTGTAAAATCTTGATTCCTGAGTTCCAGGGTACAGAGCTTATGGAAT---AGAGTCCCCAGGTTTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       298865 81 +    378907 GAAGAACTC-TTTTTATTTCTGTAAAGTCTTGATTCCTGAGTT-CAGGGTACAGAGCTTATGGAAT---AGAGTCCCCAGGTTTTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102154398 80 + 121039945 GAAGAACTC---TTTATTTCTGTAAAATCTTGATTCCTGAGTTCCAGGGTACAGAGCTTGTGGAAT---AGAGTCCccaggttttg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352769 82 - 171882078 GAAGAACGC-TTTTTATTTCTGTAAAATCTTGATTCCTGAGTTCCAGGGTACAGAGTTTATGGAAT---AGAGTCCCCAGGTTTTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21072572 82 -  24206276 GAAGAACGC-TTTTTATTTCTATAAAATCTTGATTCCTGAGTTCCAGGGTACAGAGTTTATGGAAT---AGAGTCCCCAGGTTTTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       308840 82 -   1458659 GAAGAACGC-TTTTTATTTCTGTAAAATCTTAATTCCTGAGTTCCAGAGTACAGAGTTTATGGAAT---AGAGTCCCCAGGTTTTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7481218 82 -   9444221 GAAGAACTC-TTTTTATTTCTGTAAGATCTGGATTCCTGAGTTCCAGGGTACAGAGTTTATGGAAT---ACAGTCCCCAGGTTTTG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18022733 82 + 132174527 GAAGAACTC-TCTTTATTTCTGTAAAATCTAGATTCCTGAGTTCTAGGGTATAGAGTTTATGGAAT---GGAGTCCCCAGGTTTTC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             518755 82 -   3282555 GAAGAACTC-TCTTTATTTCTGTAAAATCTAGATTCCTGAGTTTCAGGGTACAGAGTTTATGGAAT---AGAGTTCCCAGGTTTTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       304022 82 -   1024465 GAAGAACTC-TCTTTATTTCTGTAAAATCTAGATTCCTGAGTTCTAGGGTACAGAGTTTATGGAAT---GGAGTCCCCGGGTTTTG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       749783 82 -   3745603 GAAGAACTC-TCTTTATTTCTGTAAAATCTAGATTCCTGAGTTCTAGGGTATAGAGTTTATGGAAT---GGAGTCCCCAGGTTTTG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 932864 83 - 119751181 GAAGAACTCCTTTTTATTTCTGTAAAATCTTGATTACTAATTTCCAGGGTACAGAGTTTATGGAGT---CGAATCCCCAGGTTTTG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       656319 83 -   2566024 GAAGAACTCCTTTTTATTTCTGTAAAATCTTGCTTACTAAGTTCCAGGGTACAGAGTTTATGGAGT---CGAATCCCCAGGTTTTG
i proCoq1.NW_012149419v1    I 147 C 0
s otoGar3.GL873530            6772987 68 -  36342412 GAAGAATTCCTTTTCATTTCTATAAAATTTTGAT---------------TACAAAGTTTATAGAAT---AGAATTCCCAACTTTTG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 60800 77 -  40214260 AAGGAACTC----TTATTTCTGTAAAATATTGATTACTGAGTTCCCGGGTGT--AGTTTATGGAAC---AGAGTCCCTCGGTCTTG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              57278 76 -   2180720 ----------TTTTTATTTCAGGAAAATCTTGAATACTGGGTTCTAGGATGCAGAGTTTATGGAATGAGAGGGTCCTCAGATTTTG
i dasNov3.JH569975          C 0 I 2170
e mm10.chr9                  55186769 3974 + 124595110 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=27846.000000
s hg38.chr15_KI270850v1_alt    200332 2 +    430880 at
s panTro5.chr15              18010009 2 -  83230942 AT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17236273 2 -  99763055 AT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       298946 2 +    378907 AT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102154478 2 + 121039945 at
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352851 2 - 171882078 AT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21072654 2 -  24206276 AT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       308922 2 -   1458659 AT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7481300 2 -   9444221 AT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18022815 2 + 132174527 AT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             518837 2 -   3282555 AT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       304104 2 -   1024465 AT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       749865 2 -   3745603 AT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 932947 2 - 119751181 AT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       656402 2 -   2566024 AT
i proCoq1.NW_012149419v1    C 0 I 2389
s otoGar3.GL873530            6773055 2 -  36342412 AT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 60877 2 -  40214260 AT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              59524 2 -   2180720 at
i dasNov3.JH569975          I 2170 C 0
e mm10.chr9                  55186769 3974 + 124595110 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457 0 -   6271500 C
e rheMac8.chr7               60364078 0 + 169600520 C

a score=8071.000000
s hg38.chr15_KI270850v1_alt    200334 1 +    430880 g
s panTro5.chr15              18010011 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17236275 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       298948 1 +    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102154480 1 + 121039945 g
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352853 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21072656 1 -  24206276 G
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       308924 1 -   1458659 G
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7481302 1 -   9444221 A
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18022817 1 + 132174527 G
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             518839 1 -   3282555 G
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       304106 1 -   1024465 G
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       749867 1 -   3745603 G
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 932949 1 - 119751181 A
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6773057 1 -  36342412 A
i otoGar3.GL873530          C 0 I 1679
s canFam3.chr30                 60879 1 -  40214260 G
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              59526 1 -   2180720 g
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       656404 2389 -   2566024 I
e mm10.chr9                  55186769 3974 + 124595110 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457 0 -   6271500 C
e rheMac8.chr7               60364078 0 + 169600520 C

a score=12376.000000
s hg38.chr15_KI270850v1_alt    200335 1 +    430880 t
s panTro5.chr15              18010012 1 -  83230942 T
i panTro5.chr15             C 0 I 2
s panPan2.chr15              17236276 1 -  99763055 T
i panPan2.chr15             C 0 I 2
s gorGor5.CYUI01015946v1       298949 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 I 2
s nomLeu3.chr6              102154481 1 + 121039945 t
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352854 1 - 171882078 T
i macFas5.chr7              C 0 I 2
s chlSab2.chr29              21072657 1 -  24206276 T
i chlSab2.chr29             C 0 I 2
s manLeu1.NW_012105520v1       308925 1 -   1458659 T
i manLeu1.NW_012105520v1    C 0 I 2
s colAng1.NW_012112253v1      7481303 1 -   9444221 T
i colAng1.NW_012112253v1    C 0 I 810
s calJac3.chr10              18022818 1 + 132174527 T
i calJac3.chr10             C 0 I 2
s saiBol1.JH378276             518840 1 -   3282555 T
i saiBol1.JH378276          C 0 I 1107
s cebCap1.NW_016107979v1       304107 1 -   1024465 T
i cebCap1.NW_016107979v1    C 0 I 1092
s aotNan1.NW_018511953v1       749868 1 -   3745603 T
i aotNan1.NW_018511953v1    C 0 I 1106
s micMur3.chr3                 932950 1 - 119751181 T
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6774737 1 -  36342412 t
i otoGar3.GL873530          I 1679 C 0
s canFam3.chr30                 60880 1 -  40214260 T
i canFam3.chr30             C 0 I 2
s dasNov3.JH569975              59527 1 -   2180720 t
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       656404 2389 -   2566024 I
e mm10.chr9                  55186769 3974 + 124595110 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457 0 -   6271500 C
e rheMac8.chr7               60364078 0 + 169600520 C

a score=18495.000000
s hg38.chr15_KI270850v1_alt    200336 2 +    430880 ag
s panTro5.chr15              18010015 2 -  83230942 Ag
i panTro5.chr15             I 2 C 0
s panPan2.chr15              17236279 2 -  99763055 Ag
i panPan2.chr15             I 2 C 0
s gorGor5.CYUI01015946v1       298952 2 +    378907 Ag
i gorGor5.CYUI01015946v1    I 2 C 0
s nomLeu3.chr6              102154482 2 + 121039945 ag
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352857 2 - 171882078 Ag
i macFas5.chr7              I 2 C 0
s chlSab2.chr29              21072660 2 -  24206276 Ag
i chlSab2.chr29             I 2 C 0
s manLeu1.NW_012105520v1       308928 2 -   1458659 Ag
i manLeu1.NW_012105520v1    I 2 C 0
s colAng1.NW_012112253v1      7482114 2 -   9444221 ag
i colAng1.NW_012112253v1    I 810 C 0
s calJac3.chr10              18022821 2 + 132174527 AA
i calJac3.chr10             I 2 C 0
s saiBol1.JH378276             519948 2 -   3282555 aa
i saiBol1.JH378276          I 1107 C 0
s cebCap1.NW_016107979v1       305200 2 -   1024465 ag
i cebCap1.NW_016107979v1    I 1092 C 0
s aotNan1.NW_018511953v1       750975 2 -   3745603 ag
i aotNan1.NW_018511953v1    I 1106 C 0
s micMur3.chr3                 932951 2 - 119751181 AG
i micMur3.chr3              C 0 I 1886
s otoGar3.GL873530            6774738 2 -  36342412 gg
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 60883 2 -  40214260 AG
i canFam3.chr30             I 2 C 0
s dasNov3.JH569975              59528 2 -   2180720 aa
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       656404 2389 -   2566024 I
e mm10.chr9                  55186769 3974 + 124595110 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457 0 -   6271500 C
e rheMac8.chr7               60364078 0 + 169600520 C

a score=42357.000000
s hg38.chr15_KI270850v1_alt    200338 8 +    430880 gatcctct
s panTro5.chr15              18010017 8 -  83230942 gatcctct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17236281 8 -  99763055 gatcctct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       298954 8 +    378907 gatcctct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102154484 8 + 121039945 gatcctct
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352859 8 - 171882078 gatcctct
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21072662 8 -  24206276 gatcctct
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       308930 8 -   1458659 gatcctct
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7482116 8 -   9444221 gatcctcc
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18022823 6 + 132174527 GACTTA--
i calJac3.chr10             C 0 I 911
s saiBol1.JH378276             519950 8 -   3282555 gatcctct
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       305202 8 -   1024465 gatcttct
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       750977 8 -   3745603 gatcctct
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6774740 8 -  36342412 gatcatct
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 60885 8 -  40214260 GAGTTACT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              59530 5 -   2180720 gagtt---
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 932953 1886 - 119751181 I
e proCoq1.NW_012149419v1       656404 2389 -   2566024 I
e mm10.chr9                  55186769 3974 + 124595110 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457 0 -   6271500 C
e rheMac8.chr7               60364078 0 + 169600520 C

a score=580952.000000
s hg38.chr15_KI270850v1_alt    200346 89 +    430880 ttctcctgtctgaa-aatatccttta-------gta---tttcccttagtgtgagtctgcagatagaaaaa-atcc-ttattttttatttcattattaaaga
s panTro5.chr15              18010025 89 -  83230942 ttctcctgtctgaa-aatatccttta-------gta---tttcctttagtgtgagtctgcagatagaaaaa-atcc-ttgctttttatttcatcattgaaga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17236289 89 -  99763055 ttctcctgtctgaa-aatatccttta-------gta---tttcctttagtgtgagtctgcagatagaaaaa-atcc-ttgctttttatttcatcattgaaga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       298962 89 +    378907 ttctcctgtctgaa-aatatccttta-------gta---tttcctttagtgtgactctgcagatagaaaaa-atcc-ttattttttatttcattattaaaga
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102154492 89 + 121039945 ttctcctgtgtgaa-aatatccttta-------gta---tttcctttagtgtgagtctgcagatagaaaaa-atcc-ttatgttttatttcattattgaaga
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352867 89 - 171882078 ttctcttgtctgaa-aatatccttta-------gta---tttcctttagtgtgagtctgcagatggagaaa-atcc-ttactttttatttcattattgaaga
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21072670 89 -  24206276 ttctcctgtctgaa-aatatccttta-------gta---tttcctttagtgtgagtctgcagatggagaaa-atcc-ttactttttatttcattattgaaga
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       308938 89 -   1458659 ttctcctgtctgaa-aatatccttta-------gta---tttcctttagtgtgagtctgtagatggagaaa-atcc-ttactttttgtttcattattgaaga
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7482124 90 -   9444221 ttttccagtctgaa-aatatccttta-------gta---tttcctttagtgtgagtctacagatagaaaaa-ttcctttattttttattttattattgaaga
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18023740 82 + 132174527 ttctcctgtctgaa-aatatcattta-------gta---tttcctttagtgtgagtctgaagataaaaaga-gttt--------ttatttcatttttgaaga
i calJac3.chr10             I 911 C 0
s saiBol1.JH378276             519958 82 -   3282555 ttctcctgtctgaa-aatatcctata-------gta---tttcctttagtgtgagtctgaagataaaaaaa-attt--------tcatttcatttttgaaga
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       305210 83 -   1024465 ttctcctgtctgaa-aatatccttta-------gta---tttcctttagtgtgagtctgaagataaaaaaatattt--------ttatttcatttttgaaga
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       750985 82 -   3745603 ttctcctgtctgaa-aatatccttta-------gta---tttcctttagtgtgagtctgaagataaaaaat-attt--------ttatttcatttttgaaga
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6774748 86 -  36342412 ttctcctgcctgaa-aatactctttg-------gtatttttttttttagtgtgggtctgtggatagaaaaa-tact-------tatatttcatttttgcaga
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 60893 86 -  40214260 ---------CTGAA-GAATTACTTAAAATGAAGGTA---GTTCTCTCAGT-CATATAGTCAATTAAAAACA-GTTT-ATCATTTTGGATCAATACGTAAAGA
i canFam3.chr30             C 0 I 8
s dasNov3.JH569975              59535 86 -   2180720 ttctcccacctaaagaatatccatt--------gta---ttttcttta-tgtgggtctggtgatataaatt-gtct--tatttttactttcatttccaaaa-
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 932953 1886 - 119751181 I
e proCoq1.NW_012149419v1       656404 2389 -   2566024 I
e mm10.chr9                  55186769 3974 + 124595110 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=930604.000000
s hg38.chr15_KI270850v1_alt    200435 139 +    430880 gtatctt------cattgagcgtaagtctctagattggcagtttc----catctttca------------------gcaccttgc----agatatcattctg-----------ttatgctagcttccattg------------------------tttctcctgaAG--------------------TGTTTATGGTGGTTAAATCTTGTGGAgtctttgatcagt
s panTro5.chr15              18010114 139 -  83230942 gtatctt------cattgagcgtaagtctctagatgggcagtttc----cttctttca------------------gcacttcgc----agatatcattctc-----------ttatgccagcttccattg------------------------tttctcttgaAG--------------------TGTTTATGGTGGttaaatcttgtgaagtctttgatcagt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17236378 139 -  99763055 gtatctt------cattgagcgtaagtctctagatgggcagtttc----cttctttca------------------gcacttcgc----agatatcattctc-----------ttatgccagcttccattg------------------------tttctcttgaAG--------------------TGTTTATGGTGGttaaatcttgtgaagtctttgatcagt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       299051 139 +    378907 gtatctt------cattgagcgtaagtctctagattggcagtttc----catctttca------------------gcaccttgc----agatatcattctg-----------ttatgctagcctccattg------------------------tttctcctgaAG--------------------TGTTTATGGTGGttaaatcttgtgaagtctttgatcagt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102154581 139 + 121039945 gtgtctt------cactgagtgtaagcctctagattggcagtttc----tttctttca------------------gcaccttga----ggatatcattctc-----------ttacgctagcttccattg------------------------tttctcttgaAG--------------------TGTTTATGGTGGttaaatcttgtgaagtctttgatcagt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107352956 139 - 171882078 atatctt------cactgagtgtaagtttctagattggcagtttc----cttctttcg------------------gcaccttga----agatatcattctc-----------ttatggtagcttccattg------------------------tttctcttgaAG--------------------Tgtttatggtgcttcaatcttgtgaagtctttgatcagt
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21072759 139 -  24206276 atatctt------cactgagtgtaagtttctagattggcagtttc----cttctttca------------------gtaccttga----agatatcattctc-----------ttatggtagcttccattg------------------------tttctcttgaAG--------------------Cgtttatggtgcttcaatcttgtgaagtctttgatcagt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       309027 139 -   1458659 atatctt------cactgagtgtaagtttctagattggcagtttc----cttctttca------------------gcaccttga----agatgtcattctt-----------ttatgctagcttccattg------------------------tttctcttgaAC--------------------TGTTTATGGTGGttaaatcttgtgaagtctttgatcagt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7482214 133 -   9444221 gtatttt------cattaagtgtacatttctaggttggcagtttg----ctttattca------------------gcacgttga----agatatcattctc-----------ttatgctagcttgcatta------------------------tttcttttgaAG--------------------------TGGTGGttaaatcttgtgaagtctttgatcagt
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18023822 135 + 132174527 atatttt------cattgagtgtaactttctaggttggcagt--------gttttcca------------------gcacctcga----agatatcactctc-----------ttaccccagcttccattg------------------------tttctcttgaAG--------------------TATTTATGGTGGttaaatctcgtgaagtctttggttggt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             520040 133 -   3282555 atatttt------cattgagtgtaactttctaggttggctgt--------gccttcca------------------gcacctcga----agataccattctc-----------ttaccctagcttccattg------------------------tt--tctTGAAG--------------------TATTTATGGTGGTTAGATCTTGtgaagtctttggttagt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       305293 128 -   1024465 atatttt------cattgagtgtaactttctaggttggcagt--------gtcttcca------------------gcacc-----------caccattctc-----------ttaccctagcttccattg------------------------tttctcttgaAG--------------------TATTTATGGTGGTTAAATCTTGtgaagtctttggttggt
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       751067 135 -   3745603 atatttt------cattgagtgtaactttctaggttggcagt--------gtcttcca------------------gcacctcga----agatatcattctc-----------ttaccctagcttccattg------------------------tttctcttgaAG--------------------TATTTATGGTGGttaaatcttgtgaagtctttggttggt
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6774834 129 -  36342412 gtatctt------cattgaggatagagttctaagatggcaattcc----tttctttca------------------gcacctaga----agata--attttc-----------ttattgtagcttctac--------------------------tttctcttgaa--------------------------aTGATGGttaaatcttgtgaagtctttgatcagt
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55190743 141 + 124595110 GCATTTT------TGAGGAATATAGATCTTTAGGTTTGCAAGTTGTCAACTCCTTTCA------------------GCTCCTTGAAGACAGATATCTTTCTT----------AGCATTGAAGATTCTAGAC------------------------TTTC-CTGAAAG--------------------TGCTTACAGTGGTCAAGCATTGAGAAGTCTTTG------
i mm10.chr9                 I 3974 C 0
s canFam3.chr30                 60987 215 -  40214260 ATAGATTAAATGACATTGCACTTTATTTACCAAGCTTTGCATCTG----TGTCTTTCATTACATCTGCTAAGTAGCTCACCTTTT----ATCTACAATTTATTTGGAAGTAGATTGTAATAATTGCCATTAAGTTGGCATCTTGTGTGGGTAGGTTCTCCCTTGCAGTAGAAATCTATTTGTCAGAATACTCATAGCActtaaatcttgtgaagtcttt---ctgt
i canFam3.chr30             I 8 C 0
s dasNov3.JH569975              59621 136 -   2180720 ggatttc------cactgggtgtagatttctaggttgacacttct----cttctttca------------------gcaccttga----agata-cactcct-----------ttatggtagcttccattg------------------------tttcttttgaag--------------------tatttgtagtgcttaaatcctgt--cctcttttatCAGt
i dasNov3.JH569975          C 0 I 119
e micMur3.chr3                 932953 1886 - 119751181 I
e proCoq1.NW_012149419v1       656404 2389 -   2566024 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457   0 -   6271500 C
e rheMac8.chr7               60364078   0 + 169600520 C

a score=1303000.000000
s hg38.chr15_KI270850v1_alt    200574 203 +    430880 tctggaaaattctccacaaccatatcttcagctcttgcttctgtccca------ttc-----------ttttttttcttacagggctct-acatatatgataaa-ctt-t---tcaatatatt-------gtc---ttattttctca-attttctaccttttt-g--------------tctttctg----------acct---tttt-------------ccggtttactgaatctgtcttctgctaggttactgct-gtggttaagcttatccatta
s panTro5.chr15              18010253 205 -  83230942 tttgggaaattctccacaaccatatcttcagctcttgcttctgtccca------ttc-----------ttgtttttcttccagtgctct-acgtatgtgataaa-ctt-t---tcaatatgtt-------gtctt-ttattttctca-attttccaccttttt-g--------------tctttctg----------acat---tttt-------------gcagtttactgaatctgtcttctgctaggttactgct-gtggttaagcttatccatta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17236517 205 -  99763055 tttgggaaattctccacaaccatatcttcagctcttgcttctgtccca------ttc-----------ttgtttttcttccagtgctct-acgtatgtgataaa-ctt-t---tcaatatgtt-------gtctt-ttattttctca-attttccaccttttt-g--------------tctttctg----------acat---tttt-------------gcagtttactgaatctgtcttctgctaggttactgct-gtggttaagcttatccatta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       299190 204 +    378907 tctggaaaattctccgcaaccatatcttcagctcttgcttctgtccca------ctc-----------ttttttttcttccagggctctaacatatatgataaa-ctt-t---tcaatatatt-------gtc---ttattttctca-attttctaccttttt-g--------------tctttctg----------acct---tttt-------------ccggtttactgaatctgtcttctgctaggttactgct-gtggttaagcttatgcatta
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102154720 206 + 121039945 tttggaaaattctccgcaaccatatcttcagctcttgcttctgtccta------tcc-----------ttttttttcttccagggctcttacatatgtgataaa-ctt-t---tcaatatatt-------gtctt-ttattttctca-attttctaccttttt-g--------------tctttctg----------atct---tttt-------------ccagtttactgaatctgtcttctgctgggttactgct-gtggttaagcttatccatta
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107353095 204 - 171882078 ttttgaaaactctccgcaaccatatcttcagctcttacttctgtccca------ttc------------tttttttcttccaggactct-acgtatgtgataaa-ctt-t---tcaacatact-------gtctt-ttattttctca-attttctgccttttt-g--------------tctttctg----------acct---tttt-------------tcagtttactgaatctgtcttctgctaggttactgct-gtggttaaacttatccatta
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21072898 204 -  24206276 ttttgaaaactctccgcaaccatatcttcagctcttacttctgtccca------ttc------------tttttttcttccaggactct-acgtatgtgataaa-ctt-t---tcaacatatt-------gtctt-ttattttctcc-actttctgccttttt-g--------------tctttctg----------atct---tttt-------------tcagtttactgaatctgtcttctgctaggttactgct-gtggttaaacttatccatta
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       309166 206 -   1458659 tttggcaaattctccacaaccatatcttcagctcttgcttctgtccca------ttct----------ttttttttcttccagggctct-aggtatgtgataca-ctt-t---tcaatatatt-------gtctt-ttatttttttcaattttctaccttttt-g--------------tctttctg-----------cct---tttt-------------tgaatttactgaatctgtcatctgctaagttactgct-gtggttaaacttatccatta
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7482347 205 -   9444221 tttggaaaattctctgcaactgtatcttcagctattgcttctgtccca------ttct----------ttttttttcttccagggctct-acgtatgtgataaa-ctt-t---tcgatatgtt-------gtctt-ttattttctcc-attttctgccttttt-g--------------tctttccg----------acct---tttt-------------ccagtttactgaatctctcttctgctaggttactgct--tggttaaacttatccatta
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18023957 214 + 132174527 tttggaaaattctcagcaaccgtatcttcaggtattgcttctgtccca------ttctttctttctttttttttcccttccagaactct-acatatgtaataaa-ctt-t---tcagtatatt----------tt-ttattttctcc-attttctaccatttt-g--------------tctttctg----------acct--agttt-------------ccagtttactgaatctctcttctactaagttactgct-gtggttaaacttatccatta
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             520173 220 -   3282555 tttggaaaattctcagcaaccatatcttcaggtattgcttctgtcccattcttcttctttttttttttttttttttcttccacaaccct-acatatgtaataaa-ctt-t---tcagtatatt----------tt-ttattttctcc-attttctaccatttt-g--------------tctttctg----------acct--agttt-------------ccagtttactgaatctctcttctattaagttactgct-gtggttaaacttatccatta
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       305421 204 -   1024465 tttcgaaatttttcagcaaccatatttttaggtgttgcttctgtcccat-----tcttttttttttttttttttctcttccaggactct-atgtatgtgataaa-ctt-t---tcgatatatt----------tt-ttattttctct-gttttctgccatttt-g--------------tctttctg----------acct--agttt-------------ccagcttactgaatctctcttctactgagttactg------------cttatccatta
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       751202 212 -   3745603 tttggaaaattctcagcaaccatatcttcaggtattgcttctgtccca------ttcttttttttttcttttt--ccttccaggactct-acttatgtgataaa-ctt-t---tcaatatatt----------tt-ttattttctcc-attttctaccatttt-g--------------tctttctg----------acct--agttt-------------ccagtttactgaatctctcttctactaagttattgct-gtggttaaacttatccatta
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6774963 190 -  36342412 tttggaaaattctcag-acccatatcttcaaatattg-ttctgcccca------ttc-------------tttttccttctaggactct-atgtatgtgataagcctt-t---tccgtatatt-------atctt-gtgtctt-----aattcctgcatttttca--------------cctttctg----------actt--atttt-------------ccagtttactgaatc----------taagtttctgct-gtggttaaattcatccatta
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55190884 206 + 124595110 ----GAGAATTCTC---------------ATCCATTTTTCTTGCCCTC------TTC----------------TCTCTTCTAAGACTCAGACATGTGTGATAAA-GAT-TGTGTCATTATTTT----------CT-GCATTTTCTAC-CTCTTGTACCTTTTG-GGGTCTTTCCCAAATTCATTCTGGTTGTTTGTTATTT--ATTTT-------------CCTATTTATTGAATCTCTGTACTGC-AGTTTGTTGAC-ATAGTCTCAGTTGCCCATTG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 61202 228 -  40214260 tttggaaaatactcag--acattctctccaaatactgcatcagtcccg------ttct----------ctcctctccttctaggactct-acata--aaataag-cctat---tcaatacattcacctgtgtcttgttattttctgt-attttctaccttttt-c--------------tctctctc----------ggcttcattttgtatgttttctggcctgtgtactgaatttctctttcactgagtctctacttgtggctaaattcatctgtta
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 932953 1886 - 119751181 I
e proCoq1.NW_012149419v1       656404 2389 -   2566024 I
e dasNov3.JH569975              59757 119 -   2180720 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457   0 -   6271500 C
e rheMac8.chr7               60364078   0 + 169600520 C

a score=686623.000000
s hg38.chr15_KI270850v1_alt    200777 112 +    430880 tgttattaatttcagttttgg-tagttctaaattgcagaattt-catatggttca-tttt--ataatttgcatttctctgcc-aggttttcagtcttgtcctgtctttccttgtct---tt
s panTro5.chr15              18010458 115 -  83230942 tgttattaatttcagttttgg-tagttctaaattgcagaattt-catatggttca-tttt--ataatttgcgtttctctgcc-aggttttcagtcttgtcccatctttccttgctcatgtt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17236722 115 -  99763055 tgttattaatttcagttttgg-tagttctaaattgcagaattt-catatggttca-tttt--ataatttgtgtttctctgcc-aggttttcagtcttgtcccatctttccttgctcatgtt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       299394 112 +    378907 tgttattaatttcagttttgg-tagttctaaattgcagaattt-catatggttca-tttt--ataatttgcatttctctgcc-aggttttcagtcttgtcctgtctttccttgtct---tt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102154926 112 + 121039945 cgttattaatttcagttttgg-tagttctaaattgcagaattt-catatggttca-tttt--ataatttgcacttctctgtc-aggttttcagtcttgtcccgcctttccttgtct---tt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107353299 116 - 171882078 agttattaatttcagttttga-tagttctaaattgcagaattt-catatggttga-tttt-cataatttgcatttctctgcc-aggttttcagtcttgtcctgtctttccttgctcatgtt
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21073102 116 -  24206276 agttattactttcagttttgg-tggttctaaattgcagaattt-catatggttga-tttt-cataatttgcatttctctgcc-aggttttcagtcttgtcctgtctttccttgctcatgtt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       309372 116 -   1458659 agttattactttcagttttgg-tagttctaaattgcagaattt-catatggttga-tttt-cataatttgcatttctctgcc-aggttttcagtcttgtcctgtctttccttgctcatgtt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7482552 116 -   9444221 agttattaatttcagttgtga-tagttctaaattgcagaattt-catatggttca-tttt-tataatttgcatttctctgcc-aggttttcagtcttgacctgtctttccttgatcatgtt
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18024171 115 + 132174527 agttattaatttcagctattg-tattgctaaatttcagaatttccatatggttcatttttttataatttgcatttctctgcc-aggttttcagtcttgtcttttctttc----cttatgtt
i calJac3.chr10             C 0 I 1
s saiBol1.JH378276             520393 118 -   3282555 agttattaatttcagctattg-tattgctaaatttcagaatttccatatggttca-ttttttgtaatttgcatttctctgcc-aggttttcagtcttgtcttgtctttccttgCTTATGTT
i saiBol1.JH378276          C 0 I 1
s cebCap1.NW_016107979v1       305625 114 -   1024465 agttattaatttcagctattg-tattgctaaatttcagaatttccatatggttca-ttttttataatttgcatttctctgcc-agagtttcagtcttgtcttttctttc----cttgcgta
i cebCap1.NW_016107979v1    C 0 I 11
s aotNan1.NW_018511953v1       751414 119 -   3745603 agttattaatttcagctactgatattgctaaattttggaatttccatatggttca-ttttttataatttgcgtttctctgcc-aggttttcagtcttgtcttttctttccttgcttgtgtt
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6775153 112 -  36342412 atttattaatttcagtt---g-tatttctaaatgtcagaatttccatatagttca-tttc-tataattcgcagttctctgcc-aggttttccatcttgtct--tttttccttgtacatatt
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55191090 109 + 124595110 GGT--TTAGTTCCTGCTGCTG-TGGCTCCAGAT--CAGAATCTTTATGGGTTCTG-TTGT-AATGATATACAGT--TCTGCT-GTGGTTT-GGTTTCATCTTCTC-TTCCTTCCAGATGTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 61430  88 -  40214260 agtt------------------t------------cagaatttctatgtaattca-tttt-tgttattt-tagtcctttgccaaggttttcaatcttgtcttttctttgcttgtacatatt
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              59876  63 -   2180720 tgctatctactccccctctgg-aggatctaag------------gagacaatcct-tcct------------tgcttcttcT-GGGCTTT-------------------------------
i dasNov3.JH569975          I 119 C 0
e micMur3.chr3                 932953 1886 - 119751181 I
e proCoq1.NW_012149419v1       656404 2389 -   2566024 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457   0 -   6271500 C
e rheMac8.chr7               60364078   0 + 169600520 C

a score=45043.000000
s hg38.chr15_KI270850v1_alt    200889 29 +    430880 cagcagagttattttgaag--tgtgtctgct
s panTro5.chr15              18010573 27 -  83230942 cagc--agttattttgaag--tgtgtctgct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17236837 27 -  99763055 cagc--agttattttgaag--tgtgtctgct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       299506 29 +    378907 cagcagagttattttgaag--tgtgtctgct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102155038 29 + 121039945 cagcagagttattttgaag--tgtgtctgct
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107353415 29 - 171882078 cagcagagttattttgaag--tgtgtctggt
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21073218 29 -  24206276 cagcagagttattttgaag--tgtgtctggt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       309488 27 -   1458659 cagc--agttattttgaag--tgtgtctggt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7482668 29 -   9444221 cagcagagttattttaaag--tgtgtctgca
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18024287  6 + 132174527 -ggc--aat----------------------
i calJac3.chr10             I 1 C 0
s saiBol1.JH378276             520512  6 -   3282555 -GGC--AGT----------------------
i saiBol1.JH378276          I 1 C 0
s aotNan1.NW_018511953v1       751533  7 -   3745603 cggc--agt----------------------
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6775265 13 -  36342412 cagc--agttgttta----------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55191199 26 + 124595110 CAGC--AGTT-TTGCAACA--TGCACCTGTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 61518 31 -  40214260 caacatagttattttaaaagctatgtctgat
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 932953 1886 - 119751181 I
e proCoq1.NW_012149419v1       656404 2389 -   2566024 I
e dasNov3.JH569975              59939  0 -   2180720 C
e cebCap1.NW_016107979v1       305739 11 -   1024465 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=3462096.000000
s hg38.chr15_KI270850v1_alt    200918 499 +    430880 aactctgtt--atctcaatcccttgtggttttgtgtctgttgtttgcttctcttgttttctgt-tatg-tc----atctttaagtctcatgtggctttttatttttagtgatagacattatatat-gaaaaat-------------tgcagagctaatttgaagccttggatgatattcttctccagagaggatttacattt-cccctgctagggtcttggaaattca--------------------caatcagggattgagacga------t-taaagctggccatca----ttccctg----ttggggcattttgcagtttgttcttcagattcccaa-cc-taaggagt-gggagacttagcaggg-cctctcctcagtggat-gctgagctccaatgtttaactccctgtgagctctgtgaggctgtgagttctagctcagct--tgttaacctcttct---tctctgctgtcattggaagaaaacccaaggggg------------agaaaagaagaccctgttctctgctattcccttt----------tctcAG-CCCTGTAATCAtt-acattttgtccatc
s panTro5.chr15              18010600 500 -  83230942 aactctgtt--atctcgatcccttgtggttttgtgtctgttgtttgcttctcttgttttctgt-tatg-tc----atctttaagtctcatgtggctttctatttttagtgatagacattatatatggaaaaat-------------tgtagagctaatttgaagccttggatgatattcttctccagagaggatttacattt-cccctgccaggggcttggaaattaa--------------------caatcagggattgagatga------t-taaagctggccatca----ttccctg----tcggggcaatttgcagtttgttcttcaggttcccaa-cc-taaggagt-gggagacttaacaggg-cctctcctcggtggat-gctgagctccaatgtttatctccctgtgagctctgtgaggctgtgagttctagctcagct--tgttaacctcttct---tctctgctgtcattggaggaaaacccaaggggt------------aaaaaagaagaccctgttctctggtattcccttt----------tctcag-ccctgtaatcatt-acattttgtccacc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17236864 500 -  99763055 aactctgtt--atctcgatcccttgtggttttgtgtctgttgtttgcttctcttgttttctgt-tatg-tc----atctttaagtctcatgtggctttctatttttagtgatagacattatatatggaaaaat-------------tatagagctaatttgaagccttggatgatattcttctccagagaggatttacattt-cccctgccaggggcttggaaattaa--------------------caatcagggattgagatga------t-taaagctggccatca----ttccctg----tcggggcaatttgcagtttgttcttcaggttcccaa-cc-taaggagt-gggagacttaacaggg-cctctcctcggtggat-gctgagctccaatgtttatctccctgtgagctctgtgaggctgtgagttctagctcagct--tgttaacctcttct---tctctgctgtcattggaggaaaacccaaggggt------------aaaaaagaagaccctgttctctggtattcccttt----------tctcag-ccctgtaatcatt-acattttgtccacc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       299535 499 +    378907 aactctgtt--atctcaatcccttgtggttttgtgtctgttgtttgcttcttttgttttctgt-tatg-tc----atctttaagtctcatgtggctttttatttttagtgatagacattatatat-gaaaaat-------------tgtagagctaatttgaagccttggatgatattcttctccagagaggatttacattt-cccctgccagggtcttggaaattaa--------------------caatcagggattgagatga------t-taaagctggccatca----ttccctg----ttggggcattttgcagtttgttcttcaggttcccaa-cc-taaggagt-gggagacttagcaggg-cctctcctcagtggat-gctgagctccaatgtctaactccctgtgagctctgtgaggctgtgagttctagctcagct--tgttaacctcttct---tctttgctgtcattggaagaaaacccaaggggg------------agaaaagaagaccctgttctctggtattcccttt----------tctcAG-CCCTGTAATCAtt-acattttgtccacc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102155067 499 + 121039945 aactccgtt--atcttgatcccttgaggttttgtgtctgttgtttgcttctcttgttttctgt-tatg-tc----atctttaagtctcatgtggctttttatttttagtgatagacattatatat-gaaaaat-------------tgtagagctaatttgaagccttggaggatattcttctccagagaggatttacattt-cccctgccagggacttggaaattaa--------------------caaccagggattgagatga------t-gaaagctggccatca----ttccctg----tcagggcaatttgcagtttgttcttcaggttcccaa-cc-taaggagt-gggagacttagcaggg-cctctcctcggtggat-gctgagctccagtgtttatctccctgtgagctctgtgaggctgtgagttctagctcagct--tgttaacctcttct---tctctgctgtcattggaagaaaacccaagggga------------aaaaaagaagaccctgttctctagtattcccttt----------tctcAG-CCCTGTAATCGtt-acgttttgtccacc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107353444 525 - 171882078 aactctgtt--atctcgatcccttgtggttttgtgtctgttgtttgcttctcttattttctgt-tatg-tc----attcttaagtctcatgtggctttttatttttagtgatagacattatatat-gaaatat---------ataatgtggagctaatttgaagccttggatgatattcttctccagagaggatttacatttgcccctgccaggggcttggaaattagcgacccaggattgtctcatccaatcagggattgagatga------t-taaagctggccatca----ttccctg----tcagggcaatttgcagtttgttcttcaggtccccaa-cc-tgaggagt-gggagagttagcaggg-cctctcctcggtggac-gctgagctccaatgtttatctccctgtgagctctgtgaggctgtgagttctagctcagct--tattaacctcttct---tctctgctgtcattggaagaaaacccaaggggg------------aaaaaagaagactctgttctctggtattcccttt----------tctcAGCCCCTGTAATCATT-ACATTTTGTCCACT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21073247 534 -  24206276 aactctgtt--atctcgatcccttgtggttttgtgtctgttgtttgcttctcttattttctgt-tatg-tc----attcttaagtctcatgtgactttttatttttagtgatagacattatatat-gaaatatatgaaatatataatgtagagctaatttgaagccttggatgatattcttctccagagaggatttacatttgcccctgctaggggcttggaaattagcgacccaggattgtctcatccaatcagggattgagatca------t-taaagctggccatca----ttccctg----tcagggcaatttacggtttgttcttcaggttcccaa-cc-tgaggagt-gggagagttagcaggg-cctctcctcggtggac-gctgagctccaatgtttatctccctgtgagatctgtgaggctgtgagttctagctcagct--tattaacctcttct---tctctgctgtcattggaagaaaacccaaggggg------------aaaaaagaagactctgttctctggtattcccttt----------tctcAGCCCCTGTAATCAtt-acattttgtccact
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       309515 521 -   1458659 aactctgtt--atctcgatcccttgtggttttgtgtctgttgtttgcttctcttattttctgt-tagc-tt----gtctttaagtctcatgtggctttttatttttagtgatagacattatatat-gaacagt-------------tgtagagctaatttgaagccttggatgatattcttctccagagaggatttacatttgcccctgccaggggcttggaaattagcgacccaggattgtctcatccaatcagcgattgacatga------t-taaagctggccatca----ttccctg----tcagggcaatttgcagtttgttcttcaggtccccag-cc-tgaggagt-gggagagttagcaggg-cctctccttggtggac-gctgagctccaatgtttatctccctgtgagctctgtgaggctgtgagttctagctcagct--ttttaacctcttct---tctctgctgtcattggaagaaaacccaaggggg------------aaaaaagaagactctgttctctggtattcccttt----------tctcAGCCCCTGTAATCAtt-acattttgtccact
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7482697 505 -   9444221 aactctgtt--atctcgattccttgtggttttgtgtctgttgtttacttctcttgttttctgt-tatg-tc----atctttcagtctcatgtggctttttatttttagtgatagacattatatat-gaaaaat-------------tgtagaactaatttgaagccttggatgatattcttctccagagaggatttacatttgcccctgccaggggcttggaaattagcaacccgggattgtctcatccaatcagggattgagatga------t-taaagctggccatca----ttccctg----ttagggcaatttgcagttggttcttcagggtcccaa-cc-taaggagt-gggagacttagcaggg-cccctccttgg------------------tgtttatctccctatgagctctgtgaagctctgagttctagctcagct--ttttaacctcttccttgtctcttctgtcattgggagaaaacccaaggggg-------------aaaaagaagaccctgttctctagtgttcccttt----------tctcAG-CCCTGTAATCATT-ATGTTTTGTCCACC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18024293 520 + 132174527 aactc--tt--atcttgatcccttgtgattttgtgtctgttgtttgcttctctcattttctgt-tatg-tcgacagtctttaagtctcgtgtggct---tatttttagtggtagatgttatatat-gaaaaat-------------ggtataactaatttgaagccttggatgata---ttctccagagaagatttgtgtttttccttgccggggccttggaaatcagcaatccaggattgcctcatccagtcaggaattgaggtga------t-taaagctggccatca----ttccctg----ttagggcaatttgcagcttgttcttcagggtcccaa-cc-taaggagt-gggagacttagcaggg-cctctcctcgggggagaggtgagcttcagtgtttatctttttgtgggttcactgagtc--tgagttttagctcagct--tgttaacctctTC-TTGTCTCTTCTGTCATTGGAAGAAAACCCAA-GGGG--------TTGGGGGAAAGAAGACCCTGCTCTCTGGTGTTCCCTTT----------TCTTAG-CCCTGAAATTGTT-ACGTTTTGTTCACC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             520518 505 -   3282555 AGCTC--Tt--atcttgatcccttgtgacttcgtgtctgttgtttgcttctcttgtttcctgt-tatg-tcgacagtctttaagtctcatgtggct---tatttttggtgatagatgttatatat-gaaacat-------------ggtataactaattcgaagccttggatgata---ttctctagagaagatttacatttgtccttgccagggccttggaaatcagcaacccaggatcgcctcatccagtcaggaattgagacga------t-taaag------------------ctg----TTAGGGCAATTTGCCCCTTgttcttcagggtcccaa-cc-taaggagt-gggagacttagcaggg-tctctcctcggtggagaggagcgctccggtgtttatctttttgtgagctctgtgagtctgtgagttctagctcagct--tggtaacctcttctttttttcttctgtcactggaagaaaacccaaggggg--------ttggggggaagaagaccctgctctctggtgttcc---------------cttag-ccctgaaactgtt-acattttgttcacc
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       305750 518 -   1024465 aactctgtt--atcttgatcccttgtgattttgtggccgttgtttgcttctcttgttttctgt-tatg-tcgacagtctttaagtctcgtgtggct---tatttttagtgatagatgttatatat-gaaaaat-------------ggtataactaatttgaagccttgggtgatattcttctccagagaagatttacattcgtccttgccagggccttggaaatcagcaatccagggttgcctcatccagtcagaaattgagatga------t-taaagctggccgtca----tt--ctg----ttagggcaatttgcagcttgttcttcagggtcccaa-cc-taaggagt-gggagacttagcaggg-cctatcctcggtggagaggagagctccagtgtttatctttttg---------tgagtctgtgagttctagctcagct--tgttaacctctTCTTTTTCCCTTCTGTCATTGGAAGAAAACCCAAGGGGG--------TTGGGGAAAAGAAGACCCTGCTCTCTGGTGTTCCCTTT----------TCTTAG-CCCTGAAATTGTT-AGGTTTTGTTTACC
i cebCap1.NW_016107979v1    I 11 C 0
s aotNan1.NW_018511953v1       751540 529 -   3745603 aactctgtt--atcttgatcccttgtgattttgtgtctgttgtttgcttctcttgttttctgt-tgtg-tcgacagtctttacgtctcgcgtggct---tatttttagtgatagatgtaatgtat-gaaaaat-------------ggtataactaatttgaaaccttggatgatattcttctccagagaagatttacatttgttcttgccagggccttggaaatcagcaacccaggattgcctcatccagtcaggaattgagatga------t-taaagctggccatca----ttccctg----ttagggcaatttgcagcttgttcttcagggtcccag-cc-taaggagt-gggagacttagcaggg-cctctccttggtggagaggagagctccagtgtttatctttttgtgagctctgtgagtctgtgagttctagctcagct--tgttaacctctTCTTTTTCTCTTCTGTCATTGGAAGAAAACCCAAGGGGG--------CTGGGGGAAAGAAGACCCTGCTCTCTGGTGTTCCCTTT----------TCTTAG-CCCTGAAATTGTT-ACGTTTTGTTCACC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6775278 483 -  36342412 aactctgtt--attttggtccct---------gtgtctattgttggtgcctcttgttttctg-------------attgtgtagtctcatgtgactgattatttttaggaatagatgc-acatat-gaaaaat-------------cgcagaactaatttgaagcc-tagctgatactcttctccagagagggtttacattt-----------------gggtattagcaacccaggattacttcatttaatcaggagttgacatga-----tt-taaagctggacttca----ttgcctc----ttagggcagtctgcagtttatccttcagggtcccagccc-taaagtgtcgggagacttctcaggg-cctctctttggtgaac-cctgagctccagcttttatctcccta---------tgggtctgtgagttcta-cttggct--tgttcaccttttatctttttcttctgtaattgtaagaaagcctaa-----------------aggaaaaaagacc----tctctggggtcccttttttcTTTCTGCTTTTAG-CCTTGTAATTGTTAACattctgtctgcc
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55191225 390 + 124595110 GACTCTGT----------CTCATTGTGGTTGT---CCTGTTG--GGCTT--------------------------ACATCTAAGTCTTA---------------GCATTGATGGACATTATGTGT-GAAAGGC-------------TGCAGAGGAGGGTTTCAGTATTG---------------TGGAAGGGATTAGCATTT-GCCCTGCCAGGGCCACAGACTGGGGATACCTAGG-----------CAGTCAGTGATGGAGATTT-----CT-GAGAGCCAGACTTGA----CTCCCTA----CAAGGGTAGTTGGCCGTTGGTCCCCCGTGG-CCCAT-CC-TGACGTGC-GGAAGGCCC--CAGGA-TGTGGCCTCTGCTGTG-CTGCAGCTCCAGCTTTTGCCTCCCTG-----GCTGCAAGTC--TGCATTCTG---TTGTT--TGCTAACCTCTTCCATTCCTCTTCTATAGTGGAAAGAAAA--------GG------------------------------------------CCTC----------TCCCAG-GCTTG--ACCACA-CCATGCTG------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 61549 533 -  40214260 ggttctatttaatcttgctctcttacaggttt---tgtgtaatttgcttctc--acttcctggacatgctt----gtctttaagtcttgtgtaatgggctatttttaataatagacattacaagt-gaaaaat-------------t----agctaatttgaagccttggatggtattcttctccagaaagggtttacatttgcccc--------acttgggcactagcaaccaaggatcactgaatcgggtcagggatt-aggtga------tgtaaagctggacttcggtgcttgtcag----ttagggcaatttatcacttgtccttcaggatcctga-ccttaaggtgt-gggagacttgtctagg-cctctccttggccaac--cccagctccaatatctacctcccca---gccttgtgag--tgtgagtctgagttatactgatcttgactgcttgtcttcctcttctataattgaaagaaaacccaaagtgggagtggggtggagggaagaaaggacccactctctagggctccctttttcttccagatcttgg-ctctgtaattgtc-atattttgtccacc
i canFam3.chr30             C 0 I 1
s dasNov3.JH569975              59939 412 -   2180720 ---------------------------------------------------------------------------ATTTTTGAGTctcatatggctggttactttcagtggcaaacattatatat-gaataat-------------tgtggagataatttgaagcc-tggatgataaccttctcttgagaggatttacatttgtctctgtcagaggtttgggtactagtaacccaggatcacctaatacaatcaggtagtaagatataataatt-taagactgggattca----ttccctgtcattcaggaaaatttgaagtttgtgcttcagggtctcac-cc-taaagtg--acgtgacttgtcagggtcctctccttggtggac-cttgaacttcagt-tttgtcccctta---gccctggtagtctgcAATTTC------------TTTTAGCTGCTTC------------------------------AAGTGGG----------------AAAAAGGCCCTGTTTTCTTGGTTTCCTTTT--TTTCCTGCTGTTAG-CCCCATAATTCTT-A-------------
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 932953 1886 - 119751181 I
e proCoq1.NW_012149419v1       656404 2389 -   2566024 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457   0 -   6271500 C
e rheMac8.chr7               60364078   0 + 169600520 C

a score=1633006.000000
s hg38.chr15_KI270850v1_alt    201417 176 +    430880 tttctagttctcagtgagaggattgatctaagttacctactctatcattattggaaTGGTTCCTTTATATAGTTCTAGT--G-AAGTGAAACCCCTTCATATGT--TTCATAAGTTTACC-ATAACACTGTTCTGTTTGGGC-------CTCA---------------------------------TTT--TAACTTCATTTTTATTTGCTTTG-GTTTTCATTT
s panTro5.chr15              18011100 176 -  83230942 tttctagttctcagtgagaggattgatctaagttacctactctgtcattattgcaaTGGTTCCTTTATATAGTTCTAGT--G-AAGTGAAACCCCTTCATATGT--TACATAAGTTTACC-ATAACACTGTTCTGTTTGGGC-------CTGA---------------------------------TTT--TAACTTCATTTTTATTTGCTTTG-GTTTTCATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17237364 176 -  99763055 tttctagttctcagtgagaggattgatctaagttacctactctgtcattattgcaaTGGTTCCTTTATATAGTTCTAGT--G-AAGTGAAACCCCTTCATATGT--TACATAAGTTTACC-ATAACACTGTTCTGTTTGGGC-------CTGA---------------------------------TTT--TAACTTCATTTTTATTTGCTTTG-GTTTTCATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300034 176 +    378907 tttctagttctcagtgagaggattgatctaagttacctactctatcattattggaaTGGTTCCTTTATATAGTTGTAGT--G-AAGTGAAACCCCTTCATATGT--TTCATAAGTTTACC-ATAACACTGTTCTGTTTGGGC-------CTGA---------------------------------TTT--TAACTTCATTTTTATTTGCTTTG-GTTTTCATTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102155566 176 + 121039945 tttctagttctcagtgagagggttgatctaagttacctagtctatcattattggaaTGGTTCCTTTATGTAGTTCTATT--G-AAGTGAAATCCCTTCATATGT--TACATAAGTTTACC-ATAACACTGTTCTGTTTGGGC-------CTGA---------------------------------TTT--TAACTTCATTTTTATTCGCTTTG-GTTTTCATTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107353969 175 - 171882078 TTTCTA-TTCTCAGTGGGAAGATTGATCTAAGTTACCTAGACTGTCATCGTTGGAATGGTTCCTTTATATAGTTCTATT--G-AAGTGGAACCCCTTCATATGT--TCCATAAGTTTACC-ATAACACTGTTCTGTTTGGGC-------CTGA---------------------------------TTT--TCACTTCATTTTTATTTGCTTTG-GTTTTCATTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21073781 176 -  24206276 tttctagttctcagtgggaagattgatctaagttacctagtctgtcatcgttggaaTGGTTCCTTTATATAGTTCTATT--G-AAGTGGAACCCCTTCATATGT--TCCATAAGTTTACC-ATAACACTGTTCTGTTTGGGC-------CTGa---------------------------------ttt--tcacttcatttttatttgctttg-gttttcattt
i chlSab2.chr29             C 0 I 2
s manLeu1.NW_012105520v1       310036 160 -   1458659 tttctagttctcagtgggaagattgatctaaGTTACC----------------GAATGGTTCCTTTATATAGTTCTATT--G-AAGTGGAACCCCTTCATATGT--TCCATAAGTTTACC-ATAACACTGTTCTGTTTGGGC-------CTGA---------------------------------TTT--TCACTTCATTTTTATTTGCTTTA-GTTTTCATTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7483202 171 -   9444221 TCTCTAGTTCTCAGTCAGAAGATTGATCTAAATTATC-----TATCATTATTGGAATGGTTTCTTTATATAGGTCTATT--G-AAGTGGAACCCCTTCATATGT--TTCATAATTTTACC-ATAACACTGTTCTGTTTGGGC-------CTGA---------------------------------TTT--TAACTTCATTTTTATTTGCTTTG-GTTTTCATTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18024813 175 + 132174527 TTTCTAGTTCTTAGTCAGGAGCTTGATCTAAATTACCTAGTTTATCATTATTGGAATGGTTCCTGTATATAGTTTTATT--G-AAGTGGCACCCCTTCATAT-A--TTCATGAGTTTACC-ATAACACTGTTCTGTTTGGGC-------CTGA---------------------------------TTT--TAACCTCATTTTTATTTGCTTTG-GTTTTCGTTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             521023 209 -   3282555 tttctagttcttagtcagacgattgatctaaattacctagtttatcattattggaaTGGTTCCTGTATATAGTTTTATT--G-AAGTGGGACCCCTTCACATAA--TTCATGAGTTTACC-ATAACACTGTTCTGTTTGGGC-------CTGATATTAAGTTCATTTTTATTTGCTTTGGGTCTGGTTT--TAACTTCATTTTTATTTGCTTTG-GTTTTTGTTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       306268 176 -   1024465 TTTCTAGTTCTTAGTCAGAAGATTGATCTAAATTACCTAGTTTATCATTATTGGAATGGTTCCTGTGTATAGTTTTATT--G-AAGTGGCACCCCTTCACATAT--TTCGTGAGTTTACC-ATAACACTGTTCTGTTTGGGC-------CTGA---------------------------------ttt--taacttcatttttattttctttg-ggtctggttt
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       752069 174 -   3745603 TTTCTAGTTCTTAGTCAGAAGATTGATCTAAATTACCTAGTTTATCATTATTGGAATGGCTCCTG--TATAGTTTTATT--G-AAGTGGCACCCCTTCATATAT--TTCATGAGTTCACC-ATAACACTGTTCTGTTTGGGC-------CTGA---------------------------------TTT--TAACTTCATTTTTACTTGCTTTG-GGTCTGGTTT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 934839 174 - 119751181 tttctagttttcagccagaagattgatctgagttacccagtttatcattattggaaTGGTCCCTTCTTATAGTTCTTTT-GG-AAGTGGAACCCCTTCCTATAT--TTCATAAATTTATC-ACAACA--GTTCTGTTTGGGC-------CTGA---------------------------------TC---TAACttcatttttatttgctttt-gttttcactt
i micMur3.chr3              I 1886 C 0
s proCoq1.NW_012149419v1       658793 174 -   2566024 TTTCTAGTTCTCAGCTGGAAGATTGATCTCAGTTACCCAGTTTATCATTATT-GAATGGTTCCTTCCTATAGTTCTTCT-GG-AAGGGGAACCACTTCCTGTAT--TTCGTAAGTTTATC-AAAACA--GTTCTGTGTGGGC-------CTGA---------------------------------TCT--TAACTTCATTTTTATTTGCTTTG-GTTTTCACTT
i proCoq1.NW_012149419v1    I 2389 C 0
s otoGar3.GL873530            6775762 176 -  36342412 tttctagttctcagccagatgattgacctaaactacctaatctatcattattggaaTGTTTCTTTTATATAGTTCTTGT-GG-AAGTGGAACCCCTTCATAGATAATTCTTAAGTTTACC-AACACA--ATTCTGTTTGACC-------CTGA---------------------------------TCT--TAACTTCA-TTTTATTTGCTTTG-GTTTTCATTT
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  55191615  89 + 124595110 ---------CTCAGT--------------------------------------GTATGGT-----------------GT--G-AG---------------------TGAGTGAGTGCAGC-TCTGCGCTGTTCTGTC----C-------CTTA---------------------------------TTTGATGGCTTTGCTGCTGTTG--CTTG-TTTCTCATCT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 62083 185 -  40214260 cttctagttctcgactggaggattgatctaagttacctagtctatcatgattggaagGGTTCCTTTATATAGTTCTATT--GCAAGTGGAGCCCCTTCATATTT--TTCATGACTCTATTGAAAGCACTGTTCTGATTTGGTAAAATCACTGA---------------------------------CCT--TGACTTCATTTTTATTTGCTTTG-GTTTTTACTT
i canFam3.chr30             I 1 C 0
s dasNov3.JH569975              60351 132 -   2180720 --------------------------TCCAAAGTCCCTAGTCTGTCATTATTGAAATGGTCCCTTTTTATAGTTCCTTTTGA-AAATGGGATC----------T--TTCATAAGTTTACT------------CTCTTAATGT-------CTCA---------------------------------TCT--TAATGTCATTTTTATTTGATTTGAATTTTTATTT
i dasNov3.JH569975          C 0 I 180
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457   0 -   6271500 C
e rheMac8.chr7               60364078   0 + 169600520 C

a score=6734.000000
s hg38.chr15_KI270850v1_alt    201593 1 +    430880 C
s panTro5.chr15              18011276 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17237540 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300210 1 +    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102155742 1 + 121039945 C
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107354144 1 - 171882078 C
i macFas5.chr7              C 0 I 1
s manLeu1.NW_012105520v1       310196 1 -   1458659 C
i manLeu1.NW_012105520v1    C 0 I 6
s colAng1.NW_012112253v1      7483373 1 -   9444221 C
i colAng1.NW_012112253v1    C 0 I 5
s calJac3.chr10              18024988 1 + 132174527 T
i calJac3.chr10             C 0 I 1
s saiBol1.JH378276             521232 1 -   3282555 T
i saiBol1.JH378276          C 0 I 1
s cebCap1.NW_016107979v1       306444 1 -   1024465 t
i cebCap1.NW_016107979v1    C 0 I 1
s aotNan1.NW_018511953v1       752243 1 -   3745603 T
i aotNan1.NW_018511953v1    C 0 I 1
s micMur3.chr3                 935013 1 - 119751181 c
i micMur3.chr3              C 0 I 5
s proCoq1.NW_012149419v1       658967 1 -   2566024 C
i proCoq1.NW_012149419v1    C 0 I 5
s otoGar3.GL873530            6775938 1 -  36342412 C
i otoGar3.GL873530          C 0 I 5
s canFam3.chr30                 62268 1 -  40214260 C
i canFam3.chr30             C 0 I 6
s dasNov3.JH569975              60663 1 -   2180720 c
i dasNov3.JH569975          I 180 C 0
e mm10.chr9                  55191704 0 + 124595110 C
e chlSab2.chr29              21073957 2 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457 0 -   6271500 C
e rheMac8.chr7               60364078 0 + 169600520 C

a score=-5557.000000
s hg38.chr15_KI270850v1_alt    201594 6 +    430880 ATTTTT-
s panTro5.chr15              18011277 6 -  83230942 ATTTTT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17237541 6 -  99763055 ATTTTT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300211 6 +    378907 ATTTTT-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102155743 6 + 121039945 ATTTTT-
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107354146 5 - 171882078 GTTCC--
i macFas5.chr7              I 1 C 0
s chlSab2.chr29              21073959 5 -  24206276 GTTCC--
i chlSab2.chr29             I 2 C 0
s colAng1.NW_012112253v1      7483379 5 -   9444221 GTTTT--
i colAng1.NW_012112253v1    I 5 I 3
s calJac3.chr10              18024990 5 + 132174527 GTTTT--
i calJac3.chr10             I 1 C 0
s saiBol1.JH378276             521234 5 -   3282555 GTTTT--
i saiBol1.JH378276          I 1 C 0
s cebCap1.NW_016107979v1       306446 5 -   1024465 acttc--
i cebCap1.NW_016107979v1    I 1 I 43
s aotNan1.NW_018511953v1       752245 5 -   3745603 ACTTC--
i aotNan1.NW_018511953v1    I 1 I 43
s micMur3.chr3                 935019 5 - 119751181 gtttt--
i micMur3.chr3              I 5 C 0
s proCoq1.NW_012149419v1       658973 5 -   2566024 GTTTT--
i proCoq1.NW_012149419v1    I 5 C 0
s otoGar3.GL873530            6775944 5 -  36342412 GTATT--
i otoGar3.GL873530          I 5 C 0
s mm10.chr9                  55191704 5 + 124595110 GTCCT--
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 62275 3 -  40214260 GTT----
i canFam3.chr30             I 6 C 0
s dasNov3.JH569975              60664 6 -   2180720 atctt-t
i dasNov3.JH569975          C 0 I 15
e manLeu1.NW_012105520v1       310197 6 -   1458659 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457 0 -   6271500 C
e rheMac8.chr7               60364078 0 + 169600520 C

a score=7563.000000
s hg38.chr15_KI270850v1_alt    201600 4 +    430880 TCTG
s panTro5.chr15              18011283 4 -  83230942 TCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17237547 4 -  99763055 TCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300217 4 +    378907 TCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102155749 4 + 121039945 TCTG
i nomLeu3.chr6              C 0 C 0
s calJac3.chr10              18024995 2 + 132174527 --GG
i calJac3.chr10             C 0 I 1
s saiBol1.JH378276             521239 2 -   3282555 --AG
i saiBol1.JH378276          C 0 I 1
s micMur3.chr3                 935024 4 - 119751181 tTGG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       658978 4 -   2566024 TTGG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6775949 4 -  36342412 TTGG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55191709 3 + 124595110 -TTG
i mm10.chr9                 C 0 I 1
s canFam3.chr30                 62278 3 -  40214260 -TTG
i canFam3.chr30             C 0 I 1
s dasNov3.JH569975              60685 4 -   2180720 tttg
i dasNov3.JH569975          I 15 C 0
e aotNan1.NW_018511953v1       752250 43 -   3745603 I
e cebCap1.NW_016107979v1       306451 43 -   1024465 I
e colAng1.NW_012112253v1      7483384 3 -   9444221 I
e manLeu1.NW_012105520v1       310197 6 -   1458659 I
e chlSab2.chr29              21073964 0 -  24206276 C
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457 0 -   6271500 C
e macFas5.chr7              107354151 0 - 171882078 C
e rheMac8.chr7               60364078 0 + 169600520 C

a score=18576.000000
s hg38.chr15_KI270850v1_alt    201604 13 +    430880 -------------------------------TACTAATTTTACT--------------------------------------------
s panTro5.chr15              18011287 13 -  83230942 -------------------------------TACTAATTTTACC--------------------------------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17237551 13 -  99763055 -------------------------------TACTAATTTTACC--------------------------------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300221 13 +    378907 -------------------------------TGCTAATTTTACT--------------------------------------------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102155753 13 + 121039945 -------------------------------TACTAATTTTACC--------------------------------------------
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107354151 13 - 171882078 -------------------------------TACTAATTTTACC--------------------------------------------
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21073964 13 -  24206276 -------------------------------CACTAATTTTACC--------------------------------------------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       310203 13 -   1458659 -------------------------------TACTAATTTTACC--------------------------------------------
i manLeu1.NW_012105520v1    I 6 C 0
s colAng1.NW_012112253v1      7483387 13 -   9444221 -------------------------------TACTAAGTTTACC--------------------------------------------
i colAng1.NW_012112253v1    I 3 C 0
s calJac3.chr10              18024998  7 + 132174527 -------------------------------TACTAAC--------------------------------------------------
i calJac3.chr10             I 1 C 0
s saiBol1.JH378276             521242  7 -   3282555 -------------------------------TACTAAC--------------------------------------------------
i saiBol1.JH378276          I 1 C 0
s micMur3.chr3                 935028  7 - 119751181 -------------------------------TACTAAC--------------------------------------------------
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       658982  7 -   2566024 -------------------------------TACTAAC--------------------------------------------------
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6775953  7 -  36342412 -------------------------------TACTAAT--------------------------------------------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55191713 13 + 124595110 -------------------------------TACTAATTTCACT--------------------------------------------
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 62282 13 -  40214260 -------------------------------TGCGATTTTTACT--------------------------------------------
i canFam3.chr30             I 1 C 0
s dasNov3.JH569975              60689 88 -   2180720 tacaattgatgaacacatactgaagccttgctactaagtttacattatggtttacAGTGCACaattttatttttttgataattttaat
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       752250 43 -   3745603 I
e cebCap1.NW_016107979v1       306451 43 -   1024465 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=478186.000000
s hg38.chr15_KI270850v1_alt    201617 46 +    430880 TTTATGACTCTCACCCATTATCTGATAATAAAT--GTACATATTCTTT
s panTro5.chr15              18011300 46 -  83230942 TTTATGACTCTCACCCATTATCTGATAATAAAT--GTACATATTCTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17237564 46 -  99763055 TTTATGACTCTCACCCATTATCTGATAATAAAT--GTACATATTCTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300234 46 +    378907 TCTATGACTCTCACCCATTATCTGATAATAAAT--GTACATATTCTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102155766 46 + 121039945 TTTATGACTCTCACCCATTATCTGATAATAAGT--GTACATAGTCTTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107354164 46 - 171882078 TTTATGGCTTTCACCCATTATCTGATAATAAAT--GTACATATTCTTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21073977 46 -  24206276 TTTATGACTTTCACCCATTATCTGATAATAAAT--GTACATATTCTTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       310216 46 -   1458659 TTTATGACTTTCACCCATTATCTGATAATAAAT--GTACATATTCTTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7483400 46 -   9444221 TTTATGACTCTTACCCTTTATCTGATAATAAAT--GTACATATTCTTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18025005 45 + 132174527 TTTATAACTCTTACCCATTATCTGATAATAAAT--GTACACATTC-TT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             521249 44 -   3282555 TTTATAACTTTTACCAATTATCTGATAATAAAT---TACACATTC-TT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       306494 45 -   1024465 TTTATAACTCTTACCCATTATCTGATAATAAAT--GTACACATTC-TT
i cebCap1.NW_016107979v1    I 43 C 0
s aotNan1.NW_018511953v1       752293 45 -   3745603 TTTATAACTCTTACCCATTATCTGATAATAAAT--GTACACATTC-TT
i aotNan1.NW_018511953v1    I 43 C 0
s micMur3.chr3                 935035 46 - 119751181 TTTATGACCCTCACTCATTATCTGATAGTAGAT--GTACATATTATTT
i micMur3.chr3              C 0 I 22
s proCoq1.NW_012149419v1       658989 46 -   2566024 TTTATGACTCTAACTCATTATCTGATAGTAAAT--GTACATATTATTT
i proCoq1.NW_012149419v1    C 0 I 8
s otoGar3.GL873530            6775960 46 -  36342412 TTTCTGACCCTCACTCATTATCTGATAATAAAT--GTACCTTTTCTCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55191726 35 + 124595110 TTCATGACTA-------------GGTAATAAAAGAGGATACATTTCTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 62295 42 -  40214260 TTTATGACCCT----CATCATCAGATAATAAAT--GCACACATTCTTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              60777 43 -   2180720 tttatGATCTTCACTAATCATCAGA---TAAAT--GTACCTATTCTTC
i dasNov3.JH569975          C 0 C 0
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=79367.000000
s hg38.chr15_KI270850v1_alt    201663 11 +    430880 TATAGA--CTTTT
s panTro5.chr15              18011346 13 -  83230942 TATAGATTCTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17237610 13 -  99763055 TATAGATTCTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300280 13 +    378907 TATAGATTCTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102155812 13 + 121039945 TATAGATTCTTTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107354210 13 - 171882078 TATAGATTCTTTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21074023 13 -  24206276 TATAGATTCTTTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       310262 13 -   1458659 TATAGATTCTTTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7483446 13 -   9444221 TATAGATTCTTTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18025050 13 + 132174527 TATATAATCTTTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             521293 13 -   3282555 TATATAATCTTTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       306539 13 -   1024465 TATATAATCTTTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       752338 13 -   3745603 TATATAATCTTTT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6776006 10 -  36342412 -ATAGACTTTT--
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55191761 13 + 124595110 TATTGATTATTTG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 62337 10 -  40214260 -ACAGACTATT--
i canFam3.chr30             C 0 I 2
s dasNov3.JH569975              60820 12 -   2180720 -ATAGATTATTTT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 935081 22 - 119751181 I
e proCoq1.NW_012149419v1       659035  8 -   2566024 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=113742.000000
s hg38.chr15_KI270850v1_alt    201674 19 +    430880 AAAATCTTCTAAATGGTAT
s panTro5.chr15              18011359 19 -  83230942 AAAATCTTCTAAATAGTAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17237623 19 -  99763055 AAAATCTTCTAAATAGTAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300293 19 +    378907 AAAATCTTCTAAATAGTAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102155825 19 + 121039945 AAAATCTTCTAAATAGTAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107354223 19 - 171882078 AAAATCTTCCAAAGAGTAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21074036 19 -  24206276 AAAATCTTCCAAATAGTAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       310275 19 -   1458659 AAAATCTTCCAAATAGTAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7483459 17 -   9444221 AAAATCTTCTAAATAG--T
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18025063 17 + 132174527 AAAATCTTGAAAGTAG--T
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             521306 17 -   3282555 AAAATCTTGAAAGTAG--T
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       306552 17 -   1024465 AAAATCTTGAAAGTAG--T
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       752351 17 -   3745603 AAAATCTTGAAAGTAG--T
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       659043 14 -   2566024 AAAATTTTCTGAAT-----
i proCoq1.NW_012149419v1    I 8 C 0
s otoGar3.GL873530            6776016 15 -  36342412 GAAATCTTCTAAATA----
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55191774 19 + 124595110 AAAACCTTCTAGATAATGC
i mm10.chr9                 C 0 I 1
s canFam3.chr30                 62349 17 -  40214260 AAAGTCTTTGAAATAAT--
i canFam3.chr30             I 2 C 0
s dasNov3.JH569975              60832 17 -   2180720 AAAATTTTCTAAATAAT--
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 935081 22 - 119751181 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=277149.000000
s hg38.chr15_KI270850v1_alt    201693 35 +    430880 ATAGTATTAACGATGTTC--TTAAAATTAATTAAACT
s panTro5.chr15              18011378 35 -  83230942 ATAGTATTAACGATGTTC--TTAAAATTAATTAAACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17237642 35 -  99763055 ATAGTATTAACGATGTTC--TTAAAATTAATTAAACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300312 35 +    378907 ATAGTATTAACGATGTTC--TTAAAATTAATTAAACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102155844 35 + 121039945 ATAGTATTAACGATGTTC--TTAAAATTAATTAAACT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107354242 35 - 171882078 ATAGCATTAAGGATGTTC--TTCAAATTAATTAAACT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21074055 35 -  24206276 ATAGCATTAAGGATGTTC--TTCAAATTAATTAAACT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       310294 35 -   1458659 ATAGCATTAAGGATGTTC--TTCAAATTAATTAAACT
i manLeu1.NW_012105520v1    C 0 M 5855
s colAng1.NW_012112253v1      7483476 35 -   9444221 GTAGCATTAAGGATGTTC--TTAAAATTAATTAAACT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18025080 24 + 132174527 GTAACATTGAGGATGTTC--TT-----------AACT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             521323 24 -   3282555 GTAACATTGAGGATGTTC--TT-----------AACT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       306569 24 -   1024465 GTAACATCGAGGATGTTC--TT-----------AACT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       752368 24 -   3745603 GTAACATTGAGGATGTTC--TT-----------AACT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 935103 33 - 119751181 ATAGTCTTAAATATGTTC--TTAAAATTAATTAAA--
i micMur3.chr3              I 22 C 0
s proCoq1.NW_012149419v1       659057 33 -   2566024 ATAGTCTTAAGGATGTTC--TTAAAATTAATTAAA--
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6776031 35 -  36342412 ATAGTCTTAAGGATGTCCTTTTAAAAATAATTAAA--
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55191794 35 + 124595110 AAATTAAAAATAATGTTC--TTAAAATTGATTAAACT
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 62366 35 -  40214260 ACAGTGTTCAGGATTTTC--TTAAAATGACTTAAATT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              60849 35 -   2180720 GTAGTTTTAAGGATGTTC--TTAAAGTTAATTAAATT
i dasNov3.JH569975          C 0 C 0
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=1137104.000000
s hg38.chr15_KI270850v1_alt    201728  98 +    430880 TGCTTATTTGCTTTTTAGGATAACTTTCCATTTGAGCCTCCATTTGTTTGAGTGGTATTACCTGTTCTCTCAGGAGCATAAGT--------TTAAGTGATTACTTT
s panTro5.chr15              18011413 106 -  83230942 TGCTTATTTGCTTCTTAGGATAACTTTCCATTTGATCCTCCATTTGTTTGAGTGGTATTACCTGTTCTCTCAGTAGCATAAGTTTAAGTGATTAAGTGATTACTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17237677 106 -  99763055 TGCTTATTTGCTTCTTAGGATAACTTTCCATTTGATCCTCCATTTGTTTGAGTGGTATTACCTGTTCTCTCAGTAGCATAAGTTTAAGTGATTAAGTGATTACTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300347  98 +    378907 TGCTTATTTGCTTTTTAGGATAACTTTCCATTTGATCCTCCATTTGTTTGAGTGGTATTACCTGTTCTCTCAGGAGCATAAGT--------TTAAGTGATTACTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102155879  98 + 121039945 TGCTTATTTGCTTTTTACTATAACTTTCCATTTCCTCCTCCATTTGTTTGAGTGGTATTACCTGTTCTCTCAGGGGCATAAGT--------TTAAGTGATTACTTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107354277  98 - 171882078 TGCTTATTTGCTTTTTAGGCTAACTTTCCATTTGATCCTCCATTTGTTTGAGTGGTGTTAACTGTTCTTTCAGGAGCATACGT--------TTAAGTGATTACTTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21074090  98 -  24206276 TGCTTATTTGCTTTTTAGGATAACTTTCCATTTGATCCTCCATTTGTTTGAGTGGTGTTAACTGTTCTTTCAGGAGCATAAGT--------TTAAGTGATTACTTT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012112253v1      7483511  98 -   9444221 TACTTATTTGCTTTTTAGGATAATTTTCCAGTTGATCCTCCATTTGTTTGAGTGGTGTTACCTGTTCTCTCAGGAGGGTAAGT--------GTAAGTGattaattt
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18025104  98 + 132174527 TGCTTATTTGCTTTTTAGGATAACTTTCCATTTGATCCTCCATTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGGGTAAGT--------TTAAGTGATTACTTA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             521347  98 -   3282555 TGCTTATTTGCTTTTTAGGATAACTTTCCATTTGATCCTCCATTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGGGTAAGT--------TTAAGTGATTACTTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       306593  98 -   1024465 TGCTTATTTGCTTTTTAGGATAACTTTCCATTTGATCCTCCATTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGGGTAAGT--------TTAAGTGATTACTTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       752392  98 -   3745603 TGCTTATTTGCTTTTTAGGATAACTTTCCATTTGATCCTCCATTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGGGTAAGT--------TTAAGTGATTACTTA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 935136  96 - 119751181 --CTTATTTGTTTTTTAGGATAATTTTCCATTTGATCCTCCATTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGGGTAAGT--------TTAAATGATTACTTT
i micMur3.chr3              C 0 I 598
s proCoq1.NW_012149419v1       659090  96 -   2566024 --CTTATTTGCTTTTTAGGATAACTTTCCATTTGATCCTCCATTCGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGGGTAAGT--------TTAAGTGATTACTTT
i proCoq1.NW_012149419v1    C 0 I 227
s otoGar3.GL873530            6776066  83 -  36342412 --CTTACTTGCTTTTTAGGATAACTTTCCATTTGATCCTCCGTTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGGGTAAgt--------tt-------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55191829  89 + 124595110 ----TACTT--TTTTTAGGATAATTTTCCATTTGATCCTCCGTTTGTTAGAGTGGTGTTACCTGTTCTCTCAGGAGGGTAAGT--------TTACATATTTAC---
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 62401  94 -  40214260 TGCGTATTTGCTTTTTAGGATAACTTTCCATTTGATCCTCCATTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGGGTAAGT--------TTCAGTAACTA----
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              60884  98 -   2180720 TGCTTATTTGCTTTTTAGGATAACTTTCCATTTGATCCTCCATTTGTTCGAGTGGTATTACCTGTTCTCTCGGGAGGGTAAGT--------TTAAGTGATTATTTT
i dasNov3.JH569975          C 0 I 674
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457   0 -   6271500 C
e rheMac8.chr7               60364078   0 + 169600520 C

a score=-18242.000000
s hg38.chr15_KI270850v1_alt    201826  9 +    430880 AAATG----------tttt
s panTro5.chr15              18011519  5 -  83230942 AAATG--------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17237783  5 -  99763055 AAATG--------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300445  9 +    378907 AAATG----------tttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102155977  5 + 121039945 AAATT--------------
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107354375  8 - 171882078 AAAtt----------ttt-
i macFas5.chr7              C 0 I 4241
s chlSab2.chr29              21074188  8 -  24206276 AAAtt----------ttt-
i chlSab2.chr29             C 0 I 1
s colAng1.NW_012112253v1      7483609  3 -   9444221 a---------------tt-
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18025202  8 + 132174527 AAAAA----------ATT-
i calJac3.chr10             C 0 I 1
s saiBol1.JH378276             521445 18 -   3282555 CAAAATCATTTTCAGttt-
i saiBol1.JH378276          C 0 I 1
s cebCap1.NW_016107979v1       306691  8 -   1024465 AAAAA----------ttt-
i cebCap1.NW_016107979v1    C 0 I 1
s aotNan1.NW_018511953v1       752490  8 -   3745603 AAAAA----------ttt-
i aotNan1.NW_018511953v1    C 0 I 1
s otoGar3.GL873530            6776149  3 -  36342412 ---------------ttt-
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 935232 598 - 119751181 I
e proCoq1.NW_012149419v1       659186 227 -   2566024 I
e mm10.chr9                  55191918  0 + 124595110 C
e dasNov3.JH569975              60982 674 -   2180720 I
e canFam3.chr30                 62495  0 -  40214260 C
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=30657.000000
s hg38.chr15_KI270850v1_alt    201835 21 +    430880 t--------ttttttttttt-----ttttttttt---
s panTro5.chr15              18011524 16 -  83230942 -------------CTTTTTT-----TTTTTTTTT---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17237788 15 -  99763055 --------------CTTTTT-----TTTTTTTTT---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300454 29 +    378907 ttttgtttgtttgtttttgt-----ttttttttt---
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102155982 15 + 121039945 --------------TTTTTT-----ATTTTTTTA---
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107358624 20 - 171882078 ---------ttttttttttt-----ttttttttt---
i macFas5.chr7              I 4241 I 1
s chlSab2.chr29              21074197 20 -  24206276 ---------ttttttttttt-----ttttttttt---
i chlSab2.chr29             I 1 I 218
s colAng1.NW_012112253v1      7483612 20 -   9444221 ---------tttatttattt-----atttatttt---
i colAng1.NW_012112253v1    C 0 I 1
s calJac3.chr10              18025211 19 + 132174527 ----------TTTTTCAGTT-----TTAAttttt---
i calJac3.chr10             I 1 C 0
s saiBol1.JH378276             521464 19 -   3282555 ----------tttttttttt-----ttttttttt---
i saiBol1.JH378276          I 1 C 0
s cebCap1.NW_016107979v1       306700 19 -   1024465 ----------tttctttttt-----ttttttttt---
i cebCap1.NW_016107979v1    I 1 I 168
s aotNan1.NW_018511953v1       752499 24 -   3745603 ----------tttttcagtttttaattttttttt---
i aotNan1.NW_018511953v1    I 1 C 0
s otoGar3.GL873530            6776152 20 -  36342412 ---------tttgttttttt-----ttgtttttt---
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55191918  9 + 124595110 -------------------------TTTTTTTGT---
i mm10.chr9                 C 0 I 3
s canFam3.chr30                 62495 11 -  40214260 --------------------------TTCTCTTTGAT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 935232 598 - 119751181 I
e proCoq1.NW_012149419v1       659186 227 -   2566024 I
e dasNov3.JH569975              60982 674 -   2180720 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=364828.000000
s hg38.chr15_KI270850v1_alt    201856 141 +    430880 AGTTTAAAAAAattttttgtagagatgaggtctcactatgttgctctggctgttcttgaactcctgggctcaagtgatcctcccaccttgccctcccaaggtgctgggatgacaggcatga-gctgctgtgcctggGCTACG
s panTro5.chr15              18011540 140 -  83230942 AGTTT-AAAAAatgttttgtagagatgaggtctcactatgttgctctggctgttcttgaactcctgggctcaagtgatcctcccaccttgccctcccaaggtgctgggatgacaggcatga-gctgctgtgcctgggctaca
i panTro5.chr15             C 0 I 2
s panPan2.chr15              17237803 140 -  99763055 AGTTT-AAAAAattttttgtagagatgaggtctcactatgttgctctggctgttcttgaactcctgggctcaagtgatcctcccaccttgccctcccaaggtgctgggatgacaggcatga-gctgctgtgcctggGCTACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300483 141 +    378907 agtttAAAAAAattttttgtagagatgaggtctcactatgttgctctggctgttcttgaactcctgggctcaagtgatcctcccaccttgccctcccaaggtgctgggatgacaggcatga-gctgctgtgcctggGCTACA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102155997 141 + 121039945 AGTTTAAAAAAattttttgtagagatgaggtctcactatgttgctctggctgttcttgaactcctgagctcaagtgatcctcccaccttgccctcccaaggtgctgggatgacaggcgtga-gctgcagtgcctggGCTACT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107358645 138 - 171882078 AGTTTAAAAAttttttttatag-gattaagtctcactatgttgctctggctgttcttgaactcctgggttcaagcgatccacccaccttgccctcccaaagtgctgggatgacaggcatga-gcagctgtgcctggccTA--
i macFas5.chr7              I 1 C 0
s colAng1.NW_012112253v1      7483633 131 -   9444221 ----------atttttttatagagatgaggtctcactatgttgccctggctgttcttgaactgctgggctcaagcgatcctcccaccttgccctcccaaagtgctgggatgacaggcgtga-gctgctgtgtctggcttatt
i colAng1.NW_012112253v1    I 1 I 3
s calJac3.chr10              18025230 130 + 132174527 ------------tttttaatagagacaaggtttcactatgttgccctgactggtcttgaactcctgggctcaagcgatcctcccaccttggcctcccaaaatgctgggataacaggcatgaggctactgtgcctggccTACa
i calJac3.chr10             C 0 I 7
s saiBol1.JH378276             521483 129 -   3282555 ------------ttttaaatagagacaaggtttcactatgttgccctgactggtcttgaactcctaggctcaagcaatcctcccactttggcctcccaaagtgctgggattacaggcatgaggctactgtgcctggcATAC-
i saiBol1.JH378276          C 0 I 3
s aotNan1.NW_018511953v1       752523 119 -   3745603 ---------ttttttttttt----------tttcactatgttgccctgactggtcttgaactcctgggctcaagcgatcctcctacgttggcctcccaaagtgctgggatta----catgaggctactgtgcctggcctaca
i aotNan1.NW_018511953v1    C 0 I 5
s mm10.chr9                  55191930  64 + 124595110 ----------------------------------AGTATGTGTCAGAGTCCTTTGcagaact----gtctggagc----------------------------ctgggaggtcagg------attgctggacttga------
i mm10.chr9                 I 3 C 0
s canFam3.chr30                 62506  61 -  40214260 ------------------------------------agtgtgcatcagaatcatttgga------gggctag------------------------ctaaatgctagga-----ggcctag-aatgctgggct---------
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 935232 598 - 119751181 I
e proCoq1.NW_012149419v1       659186 227 -   2566024 I
e dasNov3.JH569975              60982 674 -   2180720 I
e cebCap1.NW_016107979v1       306719 168 -   1024465 I
e otoGar3.GL873530            6776172   1 -  36342412 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457   0 -   6271500 C
e rheMac8.chr7               60364078   0 + 169600520 C

a score=177618.000000
s hg38.chr15_KI270850v1_alt    201997 38 +    430880 TTTTTTTTTTT------AATATCgcgtgcaccagaa-tcatttgg
s panTro5.chr15              18011682 38 -  83230942 ttttttttttt------aatatagtgtgcaccagaa-tcatttgg
i panTro5.chr15             I 2 C 0
s panPan2.chr15              17237943 38 -  99763055 TTTTTTTTTTT------AATATagtgtgcaccagaa-tcatttgg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300624 38 +    378907 TTTTTTTTTTT------AATATagcgtgcaccagaa-tcatttgg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102156138 44 + 121039945 TTTTTTTgttttttttaaatatagtgtgcaccagag-tcatttgg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107358783 38 - 171882078 CATTTTTTTTT------AATACagtgtgcaccagaa-tcatttgg
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7483767 39 -   9444221 tattatttttt------GACACagtgtgcaccagaattcatttgg
i colAng1.NW_012112253v1    I 3 C 0
s calJac3.chr10              18025367 38 + 132174527 ttttttttttt------aatatagcgtgcaccagaa-tcatttgg
i calJac3.chr10             I 7 C 0
s saiBol1.JH378276             521615 38 -   3282555 TTTTTTTTTTA------AATATagcgtgcaccagaa-tcatttgg
i saiBol1.JH378276          I 3 C 0
s cebCap1.NW_016107979v1       306887 38 -   1024465 ttttttttttA------AATATagcgtgcaccagaa-tcatttgg
i cebCap1.NW_016107979v1    I 168 C 0
s aotNan1.NW_018511953v1       752647 38 -   3745603 ttttttttttA------AATACagagtgcaccagaa-tcatttgg
i aotNan1.NW_018511953v1    I 5 C 0
s otoGar3.GL873530            6776173 36 -  36342412 ttgtttttttt------AAta--gtgtgcagtagaa-tcgtttgg
i otoGar3.GL873530          I 1 C 0
e micMur3.chr3                 935232 598 - 119751181 I
e proCoq1.NW_012149419v1       659186 227 -   2566024 I
e mm10.chr9                  55191994  0 + 124595110 C
e dasNov3.JH569975              60982 674 -   2180720 I
e canFam3.chr30                 62567  0 -  40214260 C
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=276304.000000
s hg38.chr15_KI270850v1_alt    202035 51 +    430880 agagctagtcccagggtttctga-ttaagtaggcctgtggtgtt------gcctgagc
s panTro5.chr15              18011720 51 -  83230942 agagctagtcccagggtttcaga-ttcagtaggtctgtggtgtt------gcctgagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17237981 51 -  99763055 agagctagtcccagggtttcaga-ttcagtaggtctgtggtgtt------gcctgagc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300662 51 +    378907 agagctagtcccagggtttctga-ttcagtaggtctgtggtgtt------gcctgagc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102156182 51 + 121039945 agagctagtcccagggtttctga-ttcagaaggtctgtggtatt------gcctgagc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107358821 51 - 171882078 agagctagtcccagggtttctga-ttcagtaggtctatggtgtt------gcctgagc
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7483806 51 -   9444221 agagctagtcccagggtttctga-ttcagtaggtctgtggtggg------acctgacc
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18025405 52 + 132174527 agagttagtctcagtgtttgtgatttcagtaggtctgtggtggg------gcccaagt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             521653 52 -   3282555 agagctagtcccagggtttctaatttcagtaggtctgtggtggg------gcccaagg
i saiBol1.JH378276          C 0 I 311
s cebCap1.NW_016107979v1       306925 52 -   1024465 agagctagtcccagggtttctgatttcagtaggtctgtggtggg------gcccaagt
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       752685 52 -   3745603 agagctagtcccagggtttctgatttcagtaggtctgtggtggg------gcccaagt
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6776209 47 -  36342412 gaagttagtcccaggagttttga-tt---tagatctagggtg-g------gcctgaac
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55191994 39 + 124595110 ---------cacaggattttgtg-tcaggtaggt---tgaaggg------gcttgaga
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 62567 52 -  40214260 -----tcaccccaaggcttctaa-ttcactaggtctgggatgtgggaaaaggctgaga
i canFam3.chr30             C 0 I 7
s dasNov3.JH569975              61656 51 -   2180720 aggccttaccccagggtttcaga-ttcagtaggtctggggtgag------gcctgaga
i dasNov3.JH569975          I 674 C 0
e micMur3.chr3                 935232 598 - 119751181 I
e proCoq1.NW_012149419v1       659186 227 -   2566024 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=656065.000000
s hg38.chr15_KI270850v1_alt    202086 125 +    430880 atttacgtttttaagaagttcccaggtgaaactgatactgttgttctggggccta-catct--g-gaaccactgGTTATAAAGCATTATGTTGTTGATAGGTAGAGATTTTAGTG----Ttatatatatgcat
s panTro5.chr15              18011771 124 -  83230942 atttacatttttaagaagttcccaggtgaaactgatactgttgttctggggccta-catct--g-gaaccactgGTTATAAAGCATTATGTTGTTGATAGGTAGAGATTTTAGTG----Ttat-tatatgcat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238032 125 -  99763055 atttacatttttaagaagttcccaggtgaaactgatactgttgttctggggccta-catct--g-gaaccactgGTTATAAAGCATTATGTTGTTGATAGGTAGAGATTTTAGTG----Ttatatatatgcat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300713 124 +    378907 atttacgtttttaagaagttcccaggtgaaactgatactgttgttctggggccta-catct--g-gaaccactgGTTATAAAGCA-TATGTTGTTGATAGGTAGAGATTTTAGTG----Ttatatatatgcat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102156233 125 + 121039945 atttacatttttaagaagttcccaggtgaaactgataccgttgttctggggccta-cgtct--g-gaaccactgGTTATAAAGCATTATGTTGTTGATAGGTAGAGATTTTAGTG----Ttatatatatgtgt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107358872 113 - 171882078 atttacatttttaagaagttcccaggtgaagctgatgctgttgttctggggccca-catct--g-aaaccgttgGTTATAAATCATTATGTTGTTGATAGGTAGAGATTTTAGTG----------------at
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7483857 109 -   9444221 atttacattttttagaagttaccaggtgaagttgatgctattgatctggggccca-catct--g-gaacc----attATAAAGCATTATGTTGCTGATAGGTAGAGTTTTTAGTG----------------AC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18025457 117 + 132174527 gtttacattttgaagaagtttccaggtgaagttgatgctgttgttctggggccta-cgtct--g-gaaccattgGTTATAAAGCGTTATGTTGTTGATAGGTAGAGTTTTTAATG------------ATTCAT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522016 117 -   3282555 gtttacatttttaagaagtttccaagtgaacttgatgctgttgttctggggccta-catct--g-gaaccattACTTATAAAGCATTATGTTGTTGATAGGTAGAGTTTTTAATG------------ATTcat
i saiBol1.JH378276          I 311 C 0
s cebCap1.NW_016107979v1       306977 117 -   1024465 gtttacatttttaagaagtttccaggtgaagttgatgctattgttctggggccta-catct--g-gaaccattgCTTATAAAGCATTATGTTGTTGATAGGTAGAGTTTTTAATG------------ATTcat
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       752737 117 -   3745603 gtttacatttttgagaagtttccaggtgaagttgatgctgttgttctggggccta-catct--g-gaaccattgCTTATAAAGCATTATGTTGTTGATAGGTAGAGTTTTTAATG------------ATTCAT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6776256 116 -  36342412 -attacatttctaagtaattttcaagtgaaattgatgctatgggtctggggccta-tacta--g-aaaccattgGATACAAACTATTATGTTGTTTATAGGTGTAGTTTTTAAAA------------AATGGT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55192033 118 + 124595110 acttacctttctgagaagttctcaactgaaactgata------gtttggggtcca-cattc--a-caaccacAGG-TACAAATTAC----TTACTTATAAGCAGACATCCTAATGGAGTTTATTTATATGTGT
i mm10.chr9                 C 0 I 164
s canFam3.chr30                 62626 105 -  40214260 ttctacatttctaagatggtctcaggtgaagctgatgttgctagtttgggaaccatcattt--gagaaccattgGTTATGAACTATTATGTTATCAGTA-----AGAGTTTA---------------------
i canFam3.chr30             I 7 C 0
s dasNov3.JH569975              61707 111 -   2180720 atttgcatttctaacaagatcccagatgaa-ctgatgctgctggcccggcaccaa-gattttaa-gaatcattgG-TATAAACTATTATGTTGTTTAGAGGTGGAGTTTTTATTG------------------
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 935232 598 - 119751181 I
e proCoq1.NW_012149419v1       659186 227 -   2566024 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457   0 -   6271500 C
e rheMac8.chr7               60364078   0 + 169600520 C

a score=77434.000000
s hg38.chr15_KI270850v1_alt    202211 86 +    430880 atatacacatatatacacacacacacatatttatac--atacacacacacatatat-atattcatacatac-TTTTTTATCATAAAAA-CC
s panTro5.chr15              18011895 88 -  83230942 atatacatatatatatacacacacacatatttacacatatacacacacatatatat-atattcatacataC-TTTTTTATCATAAAAA-CC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238157 88 -  99763055 atatacacatatatatacacacacacatatttacacatatacacacacatatatat-atattcatacataC-TTTTTTATCATAAAAA-CC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300837 86 +    378907 atatacacatatatatacacacacacatatttacac--atacacacacacacatat-atatatatTCATAC-TTTTTTATCATAAAAA-CC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102156358 89 + 121039945 atatatatacatatgtacacacacacatatttacatgtacacacacacacatatat-atattcatacataCTTTTTTTATCATAAAAA-CC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107358985 78 - 171882078 atatgtgtatacacacacacacatatatatttacac--atacacacacacacatat-atacaca---------TTTTAATCATAAAAA-CC
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7483966 79 -   9444221 TCatatatatatatatacacacacaca----cacac--acacacacacctatatat-atacacataca----tTTTTTGTCGTAAGAA-CC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18025574 51 + 132174527 ACATACACATATTTATACATATACAC------------ACACAC-----------------------ATGC--TTTTTACCATTAAAA---
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522133 63 -   3282555 acatacacatatttatacatacatac------------acacaca--------------acacacataTGC--TTTTTACCGTAAAAAAAC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307094 75 -   1024465 acatacacatatttatacatacacac------------acacacacacatatatac-acacacacacaTGC--TTTTTACCATAAAAA-AC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       752854 64 -   3745603 ACATACACATATTTATacacacacac------------acacaca-------------cacacacacaGGT--GTTTTACCATAAAAATAC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6776372 34 -  36342412 TCCTGTTTATATTTCACCACAAAAAA------------CCCCAAAT---------------------------------------------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 62731 41 -  40214260 ------------------------------------------------TTATGTCTCCTGtttttatatat-tttaccattaaaaaaa-ac
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              61818 34 -   2180720 ----------------------------------------------------ACCT-CTATTTGTGTACGT-TCTATTATTAAAAAAC---
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 935232 598 - 119751181 I
e proCoq1.NW_012149419v1       659186 227 -   2566024 I
e mm10.chr9                  55192151 164 + 124595110 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=26935.000000
s hg38.chr15_KI270850v1_alt    202297 5 +    430880 AAAGG
s panTro5.chr15              18011983 5 -  83230942 AAAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238245 5 -  99763055 AAAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300923 5 +    378907 AAAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102156447 5 + 121039945 AAAGG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359063 5 - 171882078 AAAGG
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7484045 5 -   9444221 AAGTG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18025625 5 + 132174527 AAATG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522196 5 -   3282555 AAATG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307169 5 -   1024465 AAATG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       752918 5 -   3745603 AAATG
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  55192315 5 + 124595110 AAATG
i mm10.chr9                 I 164 C 0
s canFam3.chr30                 62772 5 -  40214260 aaatg
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              61852 5 -   2180720 CAGTG
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 935232 598 - 119751181 I
e proCoq1.NW_012149419v1       659186 227 -   2566024 I
e otoGar3.GL873530            6776406 0 -  36342412 C
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457 0 -   6271500 C
e rheMac8.chr7               60364078 0 + 169600520 C

a score=326686.000000
s hg38.chr15_KI270850v1_alt    202302 32 +    430880 TTTTTCAAATGTAAA--TTGTGATTGAAGGTTTA
s panTro5.chr15              18011988 32 -  83230942 TTTTTCAAATGTAAA--TTGTGATTGAAGGTTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238250 32 -  99763055 TTTTTCAAATGTAAA--TTGTGATTGAAGGTTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300928 32 +    378907 TTTTTCAAATATAAA--TTGTGATTGAAGGTTTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102156452 32 + 121039945 TTTTTCAAATGTAAA--TTGTGATTGAAGGTTTA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359068 32 - 171882078 TTTTTCAAACGTAAA--TTGTGACTGAAGGTTTA
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7484050 32 -   9444221 TTTTTCAAATGTAAA--TTGTGATTGAGGGTGTA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18025630 32 + 132174527 TTTTTCAAATGTAAA--TTGTGATTGAGGATTTA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522201 32 -   3282555 TTTTTCAAATGTAAA--TTGTGATTGAGGGTGTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307174 32 -   1024465 TTTTTCAAATGTAAA--TTGTGATTGAGGGTTTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       752923 32 -   3745603 TTTTTCAGATGTAAA--TTGTGATTGAGGGTTTA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 935830 32 - 119751181 TTTTTCAAATATAAA--TTGTGATTGAAGGTTTA
i micMur3.chr3              I 598 I 98
s proCoq1.NW_012149419v1       659413 32 -   2566024 TTTTTCAAATATAAA--TTGTGATTGAAGGTTTA
i proCoq1.NW_012149419v1    I 227 C 0
s otoGar3.GL873530            6776406 34 -  36342412 ATTTTCAAGTATAAATTTTGTGATTGAAGGTTTA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55192320 32 + 124595110 TTTTTCAAATATAAA--CCACGCTTGAGGATTTC
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 62777 32 -  40214260 tttttaaaatataaa--ttGTGATTGAGGATTTA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              61857 32 -   2180720 TTTTTCAAATATAAA--TTGTGGTGGCGTGTTTA
i dasNov3.JH569975          C 0 C 0
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=32970.000000
s hg38.chr15_KI270850v1_alt    202334 3 +    430880 GAG
s panTro5.chr15              18012020 3 -  83230942 GAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238282 3 -  99763055 GAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300960 3 +    378907 GAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102156484 3 + 121039945 GAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359100 3 - 171882078 GAG
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7484082 3 -   9444221 GAG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18025662 3 + 132174527 GAG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522233 3 -   3282555 GAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307206 3 -   1024465 GAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       752955 3 -   3745603 GAG
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       659445 3 -   2566024 GAG
i proCoq1.NW_012149419v1    C 0 I 88
s otoGar3.GL873530            6776440 3 -  36342412 GAG
i otoGar3.GL873530          C 0 I 2
s mm10.chr9                  55192352 2 + 124595110 -AG
i mm10.chr9                 C 0 I 1
s canFam3.chr30                 62809 3 -  40214260 GAG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              61889 3 -   2180720 GAG
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 935862 98 - 119751181 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457 0 -   6271500 C
e rheMac8.chr7               60364078 0 + 169600520 C

a score=569258.000000
s hg38.chr15_KI270850v1_alt    202337 104 +    430880 AATGTTATGATTACAGAGTGGTCCCCCCACATACCTGTAATCCTAATTAGTACTTCTAGGAATAATCATGGGAAATCCCATGGACCTATGGAGCTGG----CTAATTA
s panTro5.chr15              18012023 102 -  83230942 AATGTTATGATTACAGAGTGGT--CCCCACATACCTGTGATCCTAATTAGTACTTCTAGGAATAATCATGGGAAATCTCATGGACCTATGGAGCTGG----CTGATTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238285 102 -  99763055 AATGTTATGATTACAGAGTGGT--CCCCACATACCTGTGATCCTAATTAGTACTTCTAGGAATAATCATGGGAAATCTCATGGACCTATGGAGCTGG----CTGATTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       300963 103 +    378907 AATGTTATGATTACAGAGTGGT-CCCCCACATACCTGTAATCCTAATTAGTACTTCTAGGAATAATCATGGGAAATCTCATGGACCTATGGAGCTGG----CTAATTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102156487 102 + 121039945 AATGTTATGATTACAGAGTGGT--CCCCACATACCTGTGATCCTAATTAGTACTTCTAGGAATAGTCATGGGAAATCTCATGGACCTATGGAGCTGG----CTAATTA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359103 102 - 171882078 AATGTTACGATTACAGAGTGGT--CCCCACATGCCTGTGATCCTAACTGGTACTTCTAGGAATAATCATGGGAAGTCTCATGGACCTGTGGAGCTGG----CTAATTA
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7484085 101 -   9444221 AATGTTATGATTACAGAGTGGT--CCCCACATGCCTGTGACCCTAATT-ATACTTCTAGGAATAATTATGGGAAATCTCATAGATGTAAGGAGCTGG----CTAATTA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18025665 106 + 132174527 AATGTTATGATTAGAGAGTGGT--CCCCACATGCTTGTGATCCTATTTGGTACTTCTAGAAATAATCACAGGAAATCCCATGGACCTATGGAGCTGGCTGTCTAATTA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522236 106 -   3282555 AATGTTATGATTGGAGAGTGGT--CCCCACATCCTTGTGATTCTATTTGGTACTTCTAGAAATAATCACAGGAAATCCCATGGATCTGTGGAGCTGGCTGTCTAATTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307209 106 -   1024465 AATGTTATGATTAGAGAGTGGT--CCCCACGTGCTTGTGATCCTATTTGGTACTTCTAGAAATAATCACAGGAAATCCCATGGACCTATGGAGCTGGCTGTCTAATTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       752958 106 -   3745603 AATGTTATGCTTAGAGAGTGGT--CCCCACATGCTTGTGATCCTATTTGGTACTTCTAGAAATAATCACAGGAAATCCCATGGACCTATGGAGCTGGCTGTCTAATTA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6776445  98 -  36342412 AGTTTTATGATTAGAAAGCGAT--TCCCACATGCCTGTGATCCTAATTGCTATTTCTAGGTATAATCACAGGGAATCTCAGGATACTG----GCTGT----CTGATTC
i otoGar3.GL873530          I 2 C 0
s mm10.chr9                  55192355  90 + 124595110 AAAGTTTCCGTTAC--TGTGGT--TCTCACAGGCCTGTGATGCTGAGT-GTGGTCACAGTGATAATCC--GGTAACCCGAGGCAGCTGTGGAGCTCA-----------
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 62812  86 -  40214260 -----AAAGATTTGAGAATGAT--TCTCACAAGCCTG------------ATACCT---GGAATAATCACAGAAAATCTCATGGCCCTGTGGACCTGGCCATCTAATTC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              61892 105 -   2180720 AAATTTATAATTAGAGCATGAT--TTCCATATTTCTATGGTGCTAATTGTTACTTCTAGGAATAGCCAAAGAAGACCACATAGA-CTAAGGAAATGGTCTACTAATTC
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 935862  98 - 119751181 I
e proCoq1.NW_012149419v1       659448  88 -   2566024 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457   0 -   6271500 C
e rheMac8.chr7               60364078   0 + 169600520 C

a score=10035.000000
s hg38.chr15_KI270850v1_alt    202441 1 +    430880 C
s panTro5.chr15              18012125 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238387 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301066 1 +    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102156589 1 + 121039945 C
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359205 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7484186 1 -   9444221 C
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18025771 1 + 132174527 C
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522342 1 -   3282555 C
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307315 1 -   1024465 C
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       753064 1 -   3745603 C
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       659536 1 -   2566024 C
i proCoq1.NW_012149419v1    I 88 C 0
s otoGar3.GL873530            6776543 1 -  36342412 C
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55192445 1 + 124595110 T
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 62898 1 -  40214260 C
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              61997 1 -   2180720 C
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 935862 98 - 119751181 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457 0 -   6271500 C
e rheMac8.chr7               60364078 0 + 169600520 C

a score=490063.000000
s hg38.chr15_KI270850v1_alt    202442 56 +    430880 TTCTAGAGGTGATAGTTGCAGTGTAGTAGAATCAAATGGTAATTGTCATGCAGTTT
s panTro5.chr15              18012126 56 -  83230942 TTCTAGAGGTGATAGTTGCAGTGTAGTAGAATCAAATGGTAATTGTCATGCTGTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238388 56 -  99763055 TTCTAGAGGTGATAGTTGCAGTGTAGTAGAATCAAATGGTAATTGTCATGCTGTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301067 56 +    378907 TTCTAGAGGTGATAGTTGCAGTGTAGTAGAATCAAATGGTAATTGTCATGCAGTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102156590 56 + 121039945 TTCTAGAGGTGATAGTTGCAGTGTAGTAGAATCAAATGGTAATTATCATGCAGTTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359206 56 - 171882078 TTCTAGAGGTGATAGTTGCAGTGTAGTAGAATCAAATGGTAATTGTCATGCAGTTT
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7484187 56 -   9444221 TTCTAGAGGTGATAGTTGCAGTTTAGTAGAATCCAATGGTAATTGTCTTGCAGTTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18025772 56 + 132174527 TTCTAGAGGTAATAGTTGCAGTTTAGTAGAGTCAAATGGTAATTGTCATGCAATTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522343 56 -   3282555 TTCTAGAGGTAATAGTTGCAGTTTAGTAGAGTCAAATGGTAATTGTCATGCAATTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307316 56 -   1024465 TTCTAGAGGTAATAGTTGCAGTTTAGTAGAGTCAAATGGTAATTGTCATGCAATTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       753065 56 -   3745603 TTCTAGAGGTAATAGTTGCAGTTTAGTAGAGTCAAATGGTAATTGTCATGCAGTTT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 935960 56 - 119751181 TTCTAGAGGTAGTAGTTGCAGTTCAGTAGAATCAAATGGTAATTGTTATATAGTTT
i micMur3.chr3              I 98 C 0
s proCoq1.NW_012149419v1       659537 56 -   2566024 TTCTAGAGGTAGTAGTTGCAGTTCAGTAGAATCAAATGGTAATTGTCATGCAGTTT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6776544 56 -  36342412 ATCTGGAGGTAGTACTTGCAGTTCAGTAGAATCAAATGCTAATCAACATGCAGTAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55192446 52 + 124595110 CTCTGCATA-AATAGTTAC---TTAATACAATTGACTGGTGATTGTCATACATCCG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 62899 50 -  40214260 TTGCAAAGGTGGTGGTTTCAGTTTGGTAGAATCAA------ATTGTCTTGCATTTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              61998 55 -   2180720 TGCTAATGGTTGT-TTTGCAGTTTGGTAAAATCTAATGGTAATTGTTGTACAGTTT
i dasNov3.JH569975          C 0 C 0
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358457  0 -   6271500 C
e rheMac8.chr7               60364078  0 + 169600520 C

a score=531230.000000
s hg38.chr15_KI270850v1_alt    202498 70 +    430880 TACTGAAATTTGTATTGCTTCTTTTTTGTGATTGGAAGTCTTACAGAA-GTGGGGAAAAGATCACAGT---TTG
s panTro5.chr15              18012182 69 -  83230942 TACTGAAATTTGTATTGCTTCTTTTTTGTGATTGGAAGTCTTACAGAA-GTGGGGAAAAG-TCACAGT---TTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238444 69 -  99763055 TACTGAAATTTGTATTGCTTCTTTTTTGTGATTGGAAGTCTTACAGAA-GTGGGGAAAAG-TCACAGT---TTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301123 69 +    378907 TACTGAAATTTGTATTGCTTC-TTTTTGTGATTGGAAGTCTTACAGAA-GTGGGGAAAAGATCACAGT---TTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102156646 70 + 121039945 TACTGAAATTTGTATTGCTTCTTTTTTGTGATTGGAAGTCTTACAGAA-GTGGGGAAAGGTTCACAGT---TTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359262 70 - 171882078 TACTGAAATTTGTATTGCTTCTTTTTTGTGATTGAAAGTCTTACAGAA-GTGGGGAAAAGATCACGGT---TTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5358457 70 -   6271500 TACTGAAATTTGTATAGCTTCTTTTTTGTGATTGGAAGTCTTACAGAA-GTGGGGTAAAGGTCACAGT---ATG
i macNem1.NW_012011056v1    C 0 C 0
s colAng1.NW_012112253v1      7484243 70 -   9444221 TATTGAAGTTTGTATTGCTTCTTTTTTGTGGTTGGAAGTCTTACAGAC-GTGGGGAAAAGATCGCAGT---TTG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18025828 70 + 132174527 TACTAAAATTCATATTGCTTC-TTTTTATGGTTGGAAATCTTATAGAAGGTAGAGAAAAGATCACAAT---TTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522399 70 -   3282555 TACTAAAGTTCGTATTGCTTC-TTTTTATAGTTGAAAATCTTACAGAAGGTAGAGAAAAGATCACAAC---TTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307372 66 -   1024465 TACTAAAGTTTGTA----TTC-TTTTTATGGTTGGAAATCTTATAGAAGGTAGAGAAAAGATCACAAT---TTG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       753121 70 -   3745603 TACTAAAGTTCGTATTGCTTC-TTTTTATGGTTGGAAATCTTATAGAAGGTAGAGAAAAGATCACAAT---TCG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 936016 70 - 119751181 TACTGAAGTTTGTATTGATGCTTTTTTGGGATTAGAAGTCTTACGACG-GCGGGGAAAAGATCAGCAT---TTG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       659593 70 -   2566024 TACTGGAGTTCGTATTGATGCTTTTTTGTGATTGGAAGTCTTACAATG-GTGGGGAAAAGATCAGAAT---TTG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6776600 71 -  36342412 TATTGAAGTTTGTTTTGATGCTTTTTTGTGATTAGAAGTCTTAGGAAG-GTGAG--AAGGATCAGAATTTGTTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55192498 59 + 124595110 TACTGAATTTTGTCCTGCTTC-TTTTTGTAGTTATGAAGCTATGGGAG-GCATGACAAAGA-------------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 62949 68 -  40214260 TATTGAAGCTTGTATTGCT---TTTTTGTTATTAGAAGTCTTATGAAAGATGGCGAAAAGATCAGAAT---TGG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              62053 62 -   2180720 TATTGAAGCTTGTATTGTTTCTTTGCTGTCATGAGAAGTC---------ATGAGAAAATGATCAAACT---TCG
i dasNov3.JH569975          C 0 I 341
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=379358.000000
s hg38.chr15_KI270850v1_alt    202568 44 +    430880 ---CTAGGTTAGTTATGAAAT-------------------GTTCTGTAGACCCTC-AAAGTATGAGC
s panTro5.chr15              18012251 44 -  83230942 ---CTAGGTTAGTTATGAAAT-------------------GTTCTGTAGACCCTT-AAAGTATGAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238513 44 -  99763055 ---CTAGGTTAGTTATGAAAT-------------------GTTCTGTAGACCCTT-AAAGTATGAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301192 44 +    378907 ---CTAGGTTAGTTATGAAAT-------------------GTTCTGTAGACCCTC-AAAGTATGAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102156716 44 + 121039945 ---CTAGGTTAGTTATGAAAT-------------------GTTCCGTAGACCCTC-AAAGTATGAGC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359332 44 - 171882078 ---CTAGGTTAGTTGTGAAAT-------------------GTTCTGTAGACCCTG-AAAGTATGAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5358527 44 -   6271500 ---CTAGGTTAGTTATGAAAT-------------------GTTCTGTAGACCCTC-AAAATATGAGT
i macNem1.NW_012011056v1    C 0 C 0
s colAng1.NW_012112253v1      7484313 44 -   9444221 ---CTAGATTAGTTGTGAAAT-------------------GTTCTGTAGACCCTC-AGAGTATGAGC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18025898 44 + 132174527 ---TTAGGTTAGTTATGAAAT-------------------GTTCTGTAGACCCTC-AAAGTATGAAC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522469 44 -   3282555 ---TTAGGTTAATTATTAAAT-------------------GTTCTGTAAATCCTC-AAAGTATGATC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307438 64 -   1024465 ---TTAGGTTAGTTATGAAATGAATTTGTTAGTTACGAGGGTTCTGTAAACCCTCGAAAGTATGAGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       753191 44 -   3745603 ---TTAGGTTAGTTATGAAAT-------------------GTTCTGTAGACCCTC-AAAGTATGAGC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 936086 47 - 119751181 TACTCAGGTTAGTTATGAAAC-------------------GTTCTGTAGACCCTC-AGTGTAGGAGC
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       659663 47 -   2566024 TACTTAGGTTAGTTATGAAAT-------------------GTTCTGTAGATCCTC-AATTTAGGAGC
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6776671 40 -  36342412 TACTCAGATTAGTTATGA--------------------------TATAGATCCTC-AATGTAGGAGC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55192557 41 + 124595110 ---TCAAGTTAATTATGATAT-------------------ATTATACAATCCCCC-A---TATGGGC
i mm10.chr9                 C 0 I 585
s canFam3.chr30                 63017 47 -  40214260 TACCTAGGTTAGTTATTAAAT-------------------GTTCTGCAGGTCCTT-AAATTAGGAGC
i canFam3.chr30             C 0 C 0
e dasNov3.JH569975              62115 341 -   2180720 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=667299.000000
s hg38.chr15_KI270850v1_alt    202612 87 +    430880 AATTTAAAGTAACTTGAGGATTTTCAAACACTCAGCTGACTAATTCCATTATGTGACATAATCCACATTATGGTGATTAAAATCTAA
s panTro5.chr15              18012295 87 -  83230942 AATTTAAAGTAACTTGAGGATTTTCAAACACTCAGCTGACTAATTCCATTACGTGACATAATCCACCTTATGGTGATTAAAATCTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238557 87 -  99763055 AATTTAAAGTAACTTGAGGATTTTCAAACACTCAGCTGACTAATTCCATTACGTGACATAATCCACCTTATGGTGATTAAAATCTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301236 87 +    378907 AATTTAAAGTAACTTGAGGATTTTCAAACACTCAGCTGACTAATTCCATTATGTGACATAATCCACATTATGGTGATTAAAATCTAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102156760 87 + 121039945 AATTTAAAGTAACTTGAGGATTTTCAAACACTCAGCTGACTAATTCCATTATGTGACATAATCCACATTGTGGTGATTAAAATCTAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359376 85 - 171882078 AATTTAAAATAA--TGAGGATTTTCAAACACTCAGCTGACTAATTCCATTATGTGACATAATCCACATTATGGTGATTAAAATCTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5358571 87 -   6271500 AATTTAAAGTAACTTGAGGATTTTCAAACATTCAGCTGACTAATTCCATTATGTGACATAATCCACATTATGGTGATTAAAATCTAA
i macNem1.NW_012011056v1    C 0 I 1697
s colAng1.NW_012112253v1      7484357 87 -   9444221 AATTTAAAGTAACTTGAGGATTTTGAAACACTCAGTTGACTAATTCTATTATGTGATATAATCTACATTATGGTGATTAAAATCTAA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18025942 82 + 132174527 AGTTTAAA-----TTGAGAATTTTCGAACACTCAGCTGACTAATTCTATTATATGCCATAATCTATATTATGGTGATTAAAATCTAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522513 82 -   3282555 AGTTTAAA-----TTGAGAATTTTCAAACACTCAGCTGACTAATTCTATTATGTGCCATAATCTGTATTATGGTGATTAAAATCTAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307502 82 -   1024465 AGTTTAAA-----TTGAGAATTTTCAAACACTCAGCTGACTAATTCTATTATATGCCATAATCTATATTATGGTGATTAAAATCTAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       753235 82 -   3745603 AGTTTAAA-----TTGAGAATTTTCGAACACTCAGCTGACTAATTCTATTATATGCCATAATCTATATTATGGTGATTAAAATCTAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 936133 86 - 119751181 AA-TTAAACTAATTTGAGAATTTTCAAATACTCAGCTGACTAATTCCATTTTGTGAGATAATCCACATTATCATGATTAAAACCTAA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       659710 85 -   2566024 AA-TTAAACTAATTTGAGAATTTTCAAATACTTGGCTTACTAATTCCATTTTGTGAGATAATCCACATTATGATGATT-AAATCTAA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6776711 75 -  36342412 AG-TTAAACTA----GAAAATTTTCAAA----CAACTGACTAATTCCATTTTGTGAGATAATCCACGTT---ATGATTAAAATCTAA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 63064 84 -  40214260 -AATTAAACTAATTAGAGAATTGTGAAATTGTAAATTGACCAATTCAACCTTGTGAGGTAATCCATATTATGGTG--TAAGATCTAA
i canFam3.chr30             C 0 I 30
e mm10.chr9                  55192598 585 + 124595110 I
e dasNov3.JH569975              62115 341 -   2180720 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=530804.000000
s hg38.chr15_KI270850v1_alt    202699 69 +    430880 ATATCTCCAGCCCTTACTTTGATCATTTCTATGGTTGAGATAGTAATAGTT-GCATTTAGGGTAAAAATA
s panTro5.chr15              18012382 69 -  83230942 ATATCTCCAGCCCTTACTTTGATCATTTCTATGGTTGAGATAGTAATAGTT-GCATTTAGGGTAAAAATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238644 69 -  99763055 ATATCTCCAGCCCTTACTTTGATCATTTCTATGGTTGAGATAGTAATAGTT-GCATTTAGGGTAAAAATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301323 69 +    378907 ACATCTCCAGCCCTTACTTTGATCATTTCTATGGTTGAGATAGTAATAGTT-GCATTTAGGGTAAAAATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102156847 68 + 121039945 ATATCTGCAGCCCTTACTTTGAT-ATTTCTATGGTTGAGATAGTAATAGTT-GCATTTAGGGTAAAAATA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359461 69 - 171882078 ATATCTCCAGCCCTTACTTTGATCATTTCTATGGTTGAGATAGTAATAGTT-GCATTTAGGGTAAAAATA
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7484444 69 -   9444221 ATATATCCAGCCCTTATTTTGATGATTTCTATGGTTGAGATGGTAATAGTT-GCATTTATGGTAAAAATA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18026024 68 + 132174527 ATATATCCAGCCCTTACTTTGATCATTTCTATGGCTGAGATAGTAATAGTT-GCA-TTAGGGTAAAAATA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522595 69 -   3282555 ATATATCCAGCCCTTACTTTGATCATTTCTATGGCTGAGATAGTAATAGTT-GCATTTAGGGTAAAAATA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307584 69 -   1024465 ATATATCCAGCCCTTACTTTCATCATTTCTATGGCTGAGATAGTAATAGTT-GCATTTAGGGTAAAAATA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       753317 69 -   3745603 ATATATCCAGCCCTTACTTTGATCATTTCTATGGCTGAGATAGTAATAGTT-GCATTTAGGGTAAAAATA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 936219 69 - 119751181 AAATATGAAGACCTTCCTTTGATCATTTCTGCAGTTGAAATAGTCATAATT-ACATTTAGGGTGAAAATA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       659795 69 -   2566024 AAATATGCAGACCTTCCTTTGGTCATTTCTACAGTTGAGATAGTAATAATT-ACATTTAGGGTGAAAATA
i proCoq1.NW_012149419v1    C 0 I 227
s otoGar3.GL873530            6776786 70 -  36342412 AAATGTCCAGAGCTTACTTTAATCATTTGTACAGTTGAGATAGTAATAGTTAACATTTAGGGTAAAAATT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 63178 69 -  40214260 aaatCTTCAGTCCTTACTTTGATCATTGCTATTGTTGACATAGTAATAATT-TCATTTAGATAAAAAATA
i canFam3.chr30             I 30 C 0
e mm10.chr9                  55192598 585 + 124595110 I
e dasNov3.JH569975              62115 341 -   2180720 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=67111.000000
s hg38.chr15_KI270850v1_alt    202768 10 +    430880 TGAGTGACTA
s panTro5.chr15              18012451 10 -  83230942 TGAGTGACTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238713 10 -  99763055 TGAGTGACTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301392 10 +    378907 TGAGTGACTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102156915 10 + 121039945 TGAGTGACTA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359530 10 - 171882078 TGAGTGACTA
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7484513 10 -   9444221 TGAGTGACTA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18026092 10 + 132174527 TGAGTGACTA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522664 10 -   3282555 GGAGTGACTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307653 10 -   1024465 TGAGTGACTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       753386 10 -   3745603 TGGGTGACTA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 936288 10 - 119751181 TTGGTGACTA
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6776856 10 -  36342412 GGGGTGACTA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 63247 10 -  40214260 TAGATGGCTA
i canFam3.chr30             C 0 I 1
e proCoq1.NW_012149419v1       659864 227 -   2566024 I
e mm10.chr9                  55192598 585 + 124595110 I
e dasNov3.JH569975              62115 341 -   2180720 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=598776.000000
s hg38.chr15_KI270850v1_alt    202778 121 +    430880 CTT--CACACTTCAGAAC-TTTCTCCAGAAGAGCTTTGTTGCTACA---GTTATTTTTAGTTGTATTTGCTTTACATACTTA--------TGTATGTGTTTTGGG--------GGCTAAGATCCTGTTAAGAATCA---TTCTGCA
s panTro5.chr15              18012461 122 -  83230942 CTT--CAGACTTCAGAACTTTTCTCCAGAAGAGCTTTGTTGCTACA---GTTATTTTTAGTTGTATTTGCTTTACATACTTA--------TGTATGTGTTTTGGG--------GGCTAAGATCCTGTTAAGAATCA---TTCTGTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238723 122 -  99763055 CTT--CAGACTTCAGAACTTTTCTCCAGAAGAGCTTTGTTGCTACA---GTTATTTTTAGTTGTATTTGCTTTACATACTTA--------TGTATGTGTTTTGGG--------GGCTAAGATCCTGTTAAGAATCA---TTCTGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301402 122 +    378907 CTT--CAGACTTCAGAACTTTTCTCCAGAAGAGCTTTGTTGCTACA---GTTATTTTTAGTTGTATTTGCTTTACATACTTA--------TGTATGTGTTTTGGG--------GAATAAGATCCTGTTAAGAATCA---TTCTGCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102156925 121 + 121039945 CTT--CAGACTTCAGAAC-TTTCTCCAGAAGAGCTTTGTTGCTACA---GTTATTTTTAGTTGTATTTGCTTTACATACTTA--------TGTATGTGTTTTGGG--------GGCTAAGATCCTGTTAAGAATCA---CTCTGTA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359540 124 - 171882078 CTT--CTGACTTCAGAAC-TTTCTCCAGAAGAGCTTTGTTGCTACA---GTTATTTTTACTTGTATTTGAGGTACATGCTTA--------TGTATGTGTTTTGGG--------GGCTAAGATCCTGTTAAGAATCATTATTCTGTA
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7484523 117 -   9444221 TTT--CAGACTTCAGAAC-TTTCTCTAGAAGAGTTTTGTTCCTACA---GTTATTTTTAGTTGTGTTTGCTTTACATGCTTA--------TTTATGTGTTTTGGG--------GGCTAACATC-----AAGAATCAT--TTCTGTG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18026102 122 + 132174527 CTT--CAGACTTCACAAC-TTTCCCCAGAAGAGCTGTGTTCCTGCG---ATTATTTTTAGTTGTATTTGCTTTACATGCTTA--------TGTATGTGTTTTGGG--------GGCTAACATCCTGTTAAGAATTAT--TTCTGTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522674 122 -   3282555 CTT--CAGACTTCACAGC-TTTCTCCTGAAGAGCTGTGTTCCTACG---GTTATTTTTAGTTGTATTTGCTTTACATGCTTA--------TGTATGTGTTTTGGG--------GGCTAACATCATGTTAAGAGTTAT--TTCTGTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307663 118 -   1024465 CTT--CAGACTTCACAGC-TTTCTCCAGAAGAGCTGTGTTCCTACA---GTTATTTTTAGTTGTATTTGCTTTACATGCTTA--------TATATGTGTTTTGGG--------GGCTAACATCCTGTTAAG----AT--TTCTGTG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       753396 122 -   3745603 CTT--CAGACTTCACAAC-TTTCTCCAGAAGAGCTGTGTTCCTATG---GTTATTTTTAGTTGTATTTGCTTTACATGCTTA--------TATATGTGTTTTGGG--------GGCTAACATCCTGTTAAGAATTAT--TTCTGTG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 936298 126 - 119751181 TTT-AAAGACTTCAGAAT-TTTCTGCAGAAGTGGTTTGCTCCTGCACTTACTATTTTTAGTTATATTTGCTTTACATGCTTA--------TTTCTATGTTTTTTG--------GACTCAAATCTTATTAAGAATTGT--TTCTGTA
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6776866 137 -  36342412 TGTAAAAGACTTCAGAAC-TTTCTGAAGAAGTGGTTTGCT------CTTATTATTTTTAGTTATGTTTGCTTTATATGCTTCTGGTTTTTTTTTTTTGTTTTTGGAGGGGGGAGGGTCAGCACTTGTTAAGAACTGT--TTCTGTG
i otoGar3.GL873530          C 0 C 0
e proCoq1.NW_012149419v1       659864 227 -   2566024 I
e mm10.chr9                  55192598 585 + 124595110 I
e dasNov3.JH569975              62115 341 -   2180720 I
e canFam3.chr30                 63257   1 -  40214260 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078   0 + 169600520 C

a score=397195.000000
s hg38.chr15_KI270850v1_alt    202899 72 +    430880 TAATCAGAATACATATTAAC----TATGGTGCTGATACTACGGAATAGTTGTCTGGACATGATATCCATGTGTAA-A
s panTro5.chr15              18012583 72 -  83230942 TAATCAGAATACATATTAAC----TGTGGTGCTGATACTACGGAATAGTTGTCTGGACATGATATCCGTGTGTAA-A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238845 72 -  99763055 TAATCAGAATACATATTAAC----TGTGGTGCTGATACTACGGAATAGTTGTCTGGACATGATATCCGTGTGTAA-A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301524 72 +    378907 TAATCAGAATACATGTTAAC----TGTGGTGCTGATACTACGGAATAGTTGTCTGGACATGATATCCATGTGTAA-A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102157046 72 + 121039945 TGATCAGAACACATATTAAC----TGTGGTGTTGATACTACGGAATAGTTATCTGGACATGATATCCATGTGTAA-A
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359664 72 - 171882078 TAATCAAAATACATATTAAC----TGTGGTGTTGGTACTATAGAATACTTATCTGGACATGATATCCACCGGTAA-A
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7484640 72 -   9444221 TAATCAGAATGTGTATTAAC----TGTGGTGTCGATACTACAGAATAGTTATCTGGACATGATATCCATCTGTAA-A
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18026224 75 + 132174527 TAGTCAGAGGACATATTAACATTTTATGGTGTTGATACTACAGAATAGTTATTTGGGCATGATGTCCATCTGTAA--
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522796 75 -   3282555 TAGTCAGAGTACATACTAACATTCTGTGGTGTTGATACTACAGAATAGTTATTTGGGCATGATGTCCATCTGTAA--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307781 76 -   1024465 TAGTCAGAGTACATATTAACATTCTGTGGTGTTGATACTACAGAATAGTTATTTGGGCATGATGTCCATCTGTAAA-
i cebCap1.NW_016107979v1    C 0 I 67
s aotNan1.NW_018511953v1       753518 75 -   3745603 TATTCAGAGTACATATTAACATTCTGTGGTGTTGATACTACAGAATAGTTATTTGGGCATGATGTCCATCTGTAA--
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 936424 71 - 119751181 TAGTCAGAGTATGTATTCAC----TATAGTGTTGATACTACAGAATAGTTACTTGGGCATGGTATCTATGTGTAA--
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6777003 67 -  36342412 TTGTCAGAATATGTATTAAC----TGTGGTGTTGATACTATGGAATAGTTGTTTGGGCATGGTGTC----TGTGA--
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              62456 68 -   2180720 TAGTCAGAAATGTTATTAAC----TGTAGTCTTAATATTACAGAATAATTATTTGGACATTGTGTCTAAAAA-----
i dasNov3.JH569975          I 341 C 0
e proCoq1.NW_012149419v1       659864 227 -   2566024 I
e mm10.chr9                  55192598 585 + 124595110 I
e canFam3.chr30                 63257  1 -  40214260 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=76236.000000
s hg38.chr15_KI270850v1_alt    202971 21 +    430880 AGTTCAGAG-AAACAAGAAGT--------G
s panTro5.chr15              18012655 21 -  83230942 AGTTCAGAG-AAACAAGAAGT--------G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238917 21 -  99763055 AGTTCAGAG-AAACAAGAAGT--------G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301596 21 +    378907 AGTTCAGAG-AAACAAGAAGT--------G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102157118 21 + 121039945 AGCTCAGAG-AAACAAGAAGT--------G
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359736 15 - 171882078 -----AGAG-AAA-AAAAACT--------G
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7484712 21 -   9444221 AGCTCAGAG-AAACAAAAAGT--------G
i colAng1.NW_012112253v1    C 0 I 135
s calJac3.chr10              18026299 29 + 132174527 AGCTTAGGG-AAACAAAGAGCgtgtgtgtg
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522871 21 -   3282555 AGCTCAGGG-AAACAAAAAGA--------g
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       753593 21 -   3745603 AGCTCAGGG-AAACAAAAAgt--------g
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 936495 22 - 119751181 AGTTCAGGGTAAATAAAAAGC--------A
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6777070 18 -  36342412 AGTTCAGGG----TAAAAAGC--------T
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              62524 21 -   2180720 AGTGCCAGT-AAACAAAAAAT--------G
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       659864 227 -   2566024 I
e mm10.chr9                  55192598 585 + 124595110 I
e canFam3.chr30                 63257  1 -  40214260 I
e cebCap1.NW_016107979v1       307857 67 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=5466.000000
s hg38.chr15_KI270850v1_alt    202992 2 +    430880 TG
s panTro5.chr15              18012676 2 -  83230942 TG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238938 2 -  99763055 TG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301617 2 +    378907 TG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102157139 2 + 121039945 TG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359751 2 - 171882078 TG
i macFas5.chr7              C 0 C 0
s calJac3.chr10              18026328 2 + 132174527 tg
i calJac3.chr10             C 0 I 24
s saiBol1.JH378276             522892 2 -   3282555 tg
i saiBol1.JH378276          C 0 I 24
s aotNan1.NW_018511953v1       753614 2 -   3745603 tg
i aotNan1.NW_018511953v1    C 0 I 32
s micMur3.chr3                 936517 2 - 119751181 TG
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6777088 2 -  36342412 TA
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              62545 1 -   2180720 T-
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       659864 227 -   2566024 I
e mm10.chr9                  55192598 585 + 124595110 I
e canFam3.chr30                 63257 1 -  40214260 I
e cebCap1.NW_016107979v1       307857 67 -   1024465 I
e colAng1.NW_012112253v1      7484733 135 -   9444221 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078 0 + 169600520 C

a score=-7011.000000
s hg38.chr15_KI270850v1_alt    202994 10 +    430880 GGTTTAAAAA--
s panTro5.chr15              18012678  7 -  83230942 GGTTT---AA--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238940  6 -  99763055 GGTTT----A--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301619  7 +    378907 GGTTA---AA--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102157141  9 + 121039945 GGTTT-TAAA--
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359753  8 - 171882078 GGTTA--AAA--
i macFas5.chr7              C 0 C 0
s calJac3.chr10              18026354  5 + 132174527 tgtTT-------
i calJac3.chr10             I 24 C 0
s saiBol1.JH378276             522918  5 -   3282555 tgtTT-------
i saiBol1.JH378276          I 24 C 0
s micMur3.chr3                 936519  4 - 119751181 -GTTT-------
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6777090  8 -  36342412 -GTTT-TAAA--
i otoGar3.GL873530          C 0 I 2
s dasNov3.JH569975              62546 10 -   2180720 -CTTT-TAAAAA
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       659864 227 -   2566024 I
e aotNan1.NW_018511953v1       753616 32 -   3745603 I
e mm10.chr9                  55192598 585 + 124595110 I
e canFam3.chr30                 63257  1 -  40214260 I
e cebCap1.NW_016107979v1       307857 67 -   1024465 I
e colAng1.NW_012112253v1      7484733 135 -   9444221 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=26749.000000
s hg38.chr15_KI270850v1_alt    203004 13 +    430880 AAAAAAAACCTTA
s panTro5.chr15              18012685 13 -  83230942 AAAAAAAACCTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238946 13 -  99763055 AAAAAAAACCTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301626 13 +    378907 AAAAAAAACCTTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102157150 13 + 121039945 AAAAATAACCTTA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359761 13 - 171882078 AAAAAAAACCTTA
i macFas5.chr7              C 0 C 0
s calJac3.chr10              18026359  7 + 132174527 ------AATGTTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522923  7 -   3282555 ------AATGTTG
i saiBol1.JH378276          C 0 C 0
s micMur3.chr3                 936523 13 - 119751181 AAAAAAAAGTTTA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       660091 13 -   2566024 AAAAAAAAATTTA
i proCoq1.NW_012149419v1    I 227 C 0
s otoGar3.GL873530            6777100  8 -  36342412 -----AAAGTTTA
i otoGar3.GL873530          I 2 C 0
s dasNov3.JH569975              62556  5 -   2180720 --------ATTCA
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       753616 32 -   3745603 I
e mm10.chr9                  55192598 585 + 124595110 I
e canFam3.chr30                 63257  1 -  40214260 I
e cebCap1.NW_016107979v1       307857 67 -   1024465 I
e colAng1.NW_012112253v1      7484733 135 -   9444221 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=327729.000000
s hg38.chr15_KI270850v1_alt    203017 52 +    430880 GTATTACATGTGGATGTGCTGAGCTCATTTTGAGTTTCCCCACACAGTAAAG
s panTro5.chr15              18012698 52 -  83230942 GTATTACATGTGGATGTGCTGAGCTCATTTTGAGTTTCTCCACACAGTAAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17238959 52 -  99763055 GTATTACATGTGGATGTGCTGAGCTCATTTTGAATTTCTCCACACAGTAAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301639 52 +    378907 GTATTACATGTGGATGTGCTGAGCTCATTTGGAGTTTCCCCACACAGTAAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102157163 52 + 121039945 GTATTACATACGGATGTGCTGAGCTCATTTCGAGTTTCCCCACACAGTAAAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359774 52 - 171882078 GTATTACGTATGGATGTGCCAAGCTCATTTTGAGTTTCCCCACACAGGAAAT
i macFas5.chr7              C 0 C 0
s calJac3.chr10              18026366 52 + 132174527 GTATTACATATGGATATGCTGAGCTCATTTTGAGTTCTGCCACATGGTAAAG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522930 52 -   3282555 GTATTACGTATGGATATGCTGAGCTCATTTTGAGTTCTGCCACATGGTAAAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307924 52 -   1024465 GTATTACATATGGATATGCTGAGCTCATTTTGAGTTCTGCCACATGGTAAAG
i cebCap1.NW_016107979v1    I 67 C 0
s aotNan1.NW_018511953v1       753648 52 -   3745603 GTATTACATATGGATGTGCTGAGCTTATTTTGAGTTCTGCCACATGGTAAAG
i aotNan1.NW_018511953v1    I 32 C 0
s micMur3.chr3                 936536 52 - 119751181 ATATTACATATGGATGTGCTGAGCCCATTTTGAGTTCTGCAACACAGTAAAG
i micMur3.chr3              C 0 I 3082
s proCoq1.NW_012149419v1       660104 52 -   2566024 ATGTTACATATGGATGTGCTGAGCCCATTTTGAGTTCTGCAACACAGTAAAG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6777108 47 -  36342412 ATGTTACATATGGATGT-----GCCCATTTCAAGTTCTTCAATATAGTAAAG
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              62561 52 -   2180720 GTATTATATGTGGATTTGCTGAGTTCATTCTGAATGCTACAATACAGTTAAG
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55192598 585 + 124595110 I
e canFam3.chr30                 63257  1 -  40214260 I
e colAng1.NW_012112253v1      7484733 135 -   9444221 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=-3051.000000
s hg38.chr15_KI270850v1_alt    203069 1 +    430880 G
s panTro5.chr15              18012750 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17239011 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301691 1 +    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102157215 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359826 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s calJac3.chr10              18026418 1 + 132174527 C
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522982 1 -   3282555 C
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307976 1 -   1024465 C
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       753700 1 -   3745603 C
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       660156 1 -   2566024 T
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6777155 1 -  36342412 T
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              62613 1 -   2180720 T
i dasNov3.JH569975          C 0 I 9
e micMur3.chr3                 936588 3082 - 119751181 I
e mm10.chr9                  55192598 585 + 124595110 I
e canFam3.chr30                 63257 1 -  40214260 I
e colAng1.NW_012112253v1      7484733 135 -   9444221 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078 0 + 169600520 C

a score=54708.000000
s hg38.chr15_KI270850v1_alt    203070 12 +    430880 AATATTGGTTTT
s panTro5.chr15              18012751 12 -  83230942 AATATTGGTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17239012 12 -  99763055 AATATTGGTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301692 12 +    378907 AATATTGGTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102157216 12 + 121039945 AATATTGGTttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359827 12 - 171882078 AATATTGGTTTT
i macFas5.chr7              C 0 C 0
s calJac3.chr10              18026419 12 + 132174527 AATATTAttttt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             522983 12 -   3282555 AGTATTATTTTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307977 12 -   1024465 AATATTATTTTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       753701 12 -   3745603 AATATTAttttt
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       660157 12 -   2566024 AACATTGCTttt
i proCoq1.NW_012149419v1    C 0 I 2391
s otoGar3.GL873530            6777156 12 -  36342412 AATATTGCCCtt
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 936588 3082 - 119751181 I
e mm10.chr9                  55192598 585 + 124595110 I
e dasNov3.JH569975              62614  9 -   2180720 I
e canFam3.chr30                 63257  1 -  40214260 I
e colAng1.NW_012112253v1      7484733 135 -   9444221 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=7326.000000
s hg38.chr15_KI270850v1_alt    203082 3 +    430880 ATT-
s panTro5.chr15              18012763 3 -  83230942 ATT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17239024 3 -  99763055 ATT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301704 3 +    378907 ATT-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102157228 3 + 121039945 att-
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359839 3 - 171882078 ATT-
i macFas5.chr7              C 0 C 0
s saiBol1.JH378276             522995 3 -   3282555 ATT-
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307989 3 -   1024465 ATT-
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       753713 3 -   3745603 att-
i aotNan1.NW_018511953v1    C 0 I 1
s otoGar3.GL873530            6777168 3 -  36342412 -ttt
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 936588 3082 - 119751181 I
e proCoq1.NW_012149419v1       660169 2391 -   2566024 I
e mm10.chr9                  55192598 585 + 124595110 I
e calJac3.chr10              18026431 0 + 132174527 C
e dasNov3.JH569975              62614 9 -   2180720 I
e canFam3.chr30                 63257 1 -  40214260 I
e colAng1.NW_012112253v1      7484733 135 -   9444221 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078 0 + 169600520 C

a score=12021.000000
s hg38.chr15_KI270850v1_alt    203085 18 +    430880 ATTTAATTACTTAAtttt
s panTro5.chr15              18012766 18 -  83230942 ATTTAATTACTTAAtttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17239027 18 -  99763055 ATTTAATTACTTAAtttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301707 18 +    378907 ATTTAATTACTTAAtttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102157231 18 + 121039945 atttaattaattaatttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359842 18 - 171882078 ATTTAATTAATTAAtttt
i macFas5.chr7              C 0 C 0
s saiBol1.JH378276             522998  5 -   3282555 ------------GATTG-
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307992  5 -   1024465 ------------GATTC-
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530            6777171 11 -  36342412 ------tttttttcttt-
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 936588 3082 - 119751181 I
e proCoq1.NW_012149419v1       660169 2391 -   2566024 I
e aotNan1.NW_018511953v1       753716  1 -   3745603 I
e mm10.chr9                  55192598 585 + 124595110 I
e calJac3.chr10              18026431  0 + 132174527 C
e dasNov3.JH569975              62614  9 -   2180720 I
e canFam3.chr30                 63257  1 -  40214260 I
e colAng1.NW_012112253v1      7484733 135 -   9444221 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=95872.000000
s hg38.chr15_KI270850v1_alt    203103 26 +    430880 attgagacagggtctttgtctgttgc
s panTro5.chr15              18012784 26 -  83230942 attgagacggggtctttctctgttgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17239045 26 -  99763055 attgagacggggtctttctctgttgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301725 26 +    378907 attgagacagggtctttgtctgttgc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102157249 26 + 121039945 attgagacagggtctttctctgttgc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359860 26 - 171882078 attgagacagggtcttgctgtgttgc
i macFas5.chr7              C 0 C 0
s calJac3.chr10              18026431 25 + 132174527 attgagacagggtcttgctctgttg-
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             523003 25 -   3282555 Attgagacagggtcttgctctgttg-
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       307997 25 -   1024465 Attgagacagggtcttgctctgttg-
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       753717 25 -   3745603 attgagacagggtcttggtctgttg-
i aotNan1.NW_018511953v1    I 1 C 0
s otoGar3.GL873530            6777182 26 -  36342412 ttttagacagagtcttgctctgtcat
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 936588 3082 - 119751181 I
e proCoq1.NW_012149419v1       660169 2391 -   2566024 I
e mm10.chr9                  55192598 585 + 124595110 I
e dasNov3.JH569975              62614  9 -   2180720 I
e canFam3.chr30                 63257  1 -  40214260 I
e colAng1.NW_012112253v1      7484733 135 -   9444221 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=409186.000000
s hg38.chr15_KI270850v1_alt    203129 96 +    430880 cccaggctggagtg-agtggtgcaatcacagctcactgcaacctctgcctcccgggctcaagccatcctgccacctcagcctcctgagaagctggg--a
s panTro5.chr15              18012810 96 -  83230942 cccaggctggagtg-agtggtgcaatcacagctcactgcaacctctgcctcccgggctcaagccatcctgccacctcagcctcctgagaagctggg--a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17239071 96 -  99763055 cccaggctggagtg-agtggtgcaatcacagctcactgcaacctctgcctcccgggctcaagccatcctgccacctcagcctcctgagaagctggg--a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301751 96 +    378907 cccaggctggagtg-agtggtgcaatcacagctcactgcaacctctgcctcccgggctcaagccatcctgccacctcagcctcctgagaagctggg--a
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102157275 95 + 121039945 cccaggctggagtg-agtggtgcagtcacagctcactgcaacctctgcctcccgggctcaagccatcctcccacctcagcctcctgagaagct-gg--a
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359886 96 - 171882078 cccaggctggagtg-agtggtgcaatcacagctcactgcaacctctgccttccgggctcaaatcatcctcccacctcagcctcctgagtagctgga--a
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7484868 96 -   9444221 cccaggctgaagtg-agcggtacaatcacagctcactggaacctctgcctcccagccttaagccatccactcacctcatcctcctgagtagctgag--a
i colAng1.NW_012112253v1    I 135 C 0
s calJac3.chr10              18026456 96 + 132174527 cccaggctggaatacagtggtgcaatcatggctcactgcattctctgcctcctgggctcaggctgtcctcccacctcagcctcctgagtagctggg---
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             523028 83 -   3282555 cccaggctggaatacagtggtgcagtcatggctcactgcatcctcg-------------aagctgtcctcccacttcagcctcctgaggagctggg---
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       308022 97 -   1024465 cccaggctggaatacagtggtgcaatcatggctcactgcatcctttgcctcctgggctcaagctgtcatcccacctcagcctcctgagtagctggga--
i cebCap1.NW_016107979v1    C 0 I 228
s aotNan1.NW_018511953v1       753742 97 -   3745603 cccgggctggaatacagtggtgtaatcatggctcactgcatcctctgcctcctgggctcaagctgtcctcccacctcagcctcctgagtagcgggg-a-
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6777208 87 -  36342412 -ccagggtagagtg---------catcatagctcattgcagcctcaaactcctgggctaaaatgatcctcctgcctcagcctcttgaatagctggg--a
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 936588 3082 - 119751181 I
e proCoq1.NW_012149419v1       660169 2391 -   2566024 I
e mm10.chr9                  55192598 585 + 124595110 I
e dasNov3.JH569975              62614  9 -   2180720 I
e canFam3.chr30                 63257  1 -  40214260 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=697721.000000
s hg38.chr15_KI270850v1_alt    203225 241 +    430880 ctgcaggcatatgccagcacaccaagctaatttttgtatttttgatagagacagggtttcaccatgttgctca-tgttggtct-cgaactcccaggctaaagcgatccaccccactgagactgacaaagtattaggattatgggtctgagccactttgcccagccCAATGTTGTTTGTTAAAATttttt-atttatttacttatc-ttttgct------tttctgttttaatttttaaatttcta-tttttt
s panTro5.chr15              18012906 242 -  83230942 ctgcaggcgtatgccagcataccaagctaatttttgtatttttgatagagacagggtttcaccatgttgctca-tgttggtct-tgaactcccaggctaaagcgatccaccctgctgagactgacaaagtattaggattatgggtctgagccactttgcccagccCAATGTTGTTTGTTAAAatttttt-atttatttacttatc-ttttgct------tttctgttttaatttttaaatttctattttTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17239167 242 -  99763055 ctgcaggcgtatgccagcataccaagctaatttttgtatttttgatagagacagggtttcaccatgttgctca-tgttggtct-tgaactcccaggctaaagcgatccaccctgctgagactgacaaagtattaggattatgggtctgagccactttgcccagccCAATGTTGTTTGTTAAAatttttt-atttatttacttatc-ttttgct------tttctgttttaatttttaaatttctattttTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       301847 238 +    378907 ctgcaggcgtatgccagcacaccaagctaatttttgtatttttgatagagacagggtttcaccatgttgctca-tgttggtct-cgaactcccaggctaaagcgatccaccccactgagactgacaaagtattaggattatgggtctgagccactttgcccagccCAA---TGTTTGTTAAAATATTTT-Atttatttacttatc-ttttgct------tttctgttttaatttttaaatttcta-tttttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102157370 241 + 121039945 ctgcaggcctatgccaccacagcaagctaatttttgtatttttgacagagacagggtttcaccatgttgctca-tgttggtct-cgaactcccaggctaaagcgatccaccccgctgagactgacaaagtattaggattatgggtctgagccgctttgcccagcccaatgttgtttgttaaaatttttt-atttatttacttatc-ttttgct------tttctgttttaatttttaaatttcta-tttttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107359982 248 - 171882078 ccacaggtgtatgccaccaggccaagctaatttttgtatttttgatagagacagggtttcaccatgttgcttg-tgttggtct-tgaactcctaggctgaagcaatccaccccactcagactcaaaaagtattaagactatgggtctgagccactttgcccagccCAATATTGTTTGTTAAAATttttt-atttatttacttatc-ttttgcttttgtttttctgttttaatttttagatttctattttttt
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7484964 249 -   9444221 ccacaggcatatgccaccatgcccagctaatttttgtatttttgatagagacagagttttaccatgttgccca-tgttggtct-cgaattcctgagctaaagcaatccatcccactcagactcacaaagtattaggattatgggtctcagcaactttacccggcccaatattgtttgttaaaattttttaatttatttacttatc-ttttgattttctgtttttcttttaatttttaaatttctattttttt
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18026552 224 + 132174527 ----------atgccaccatgcccagctaagttttatatttttggtagagatggggttttgccatgttgcccagttttgttct-tgaactcctgggatgaagccattcacccacctcagccttgcaa--tactaggattacagctgtgagccaccgtgtctggccCAattttgttttttaaaatt-----atttatttacttatttttttgtt------tctgcttttttgttttttaattt----tatttt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             523111 222 -   3282555 ----------atgccaccatgcccggctaagttttatatttttggtagagatggggttttgccatgttgcccagttttgtttt-tgaactcctggggtgaagctattcacctgcctcagccttgcaaagtactaggattacaggtgtgagccactgcgtctggccCAATTTTGtttttaaaaatt-----atttatttaCT--TTGTTTTGTT------TCTGCTTTTTTGTTTTTTAATTT------TTTT
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       753839 224 -   3745603 -----------tgccaccatgcccagctgagttttatatttttggtagagatggggttttgccatgttgctcagttttgttct-tgaactcctggggtgaagccattcacctgcctcagccttgcaaagtactaggattacaggtgtgagccaccgtgtctggccCAATTTTGTTTTTAAAAAtt-----attgatttacTTATT-TTTTGTT------TCTGCTTTTTTGTTTTTTAATTT----TTTTTT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6777295 176 -  36342412 ctacaggtgtgcatcatgatgcctgacagatttttctgtgtttagtagagatgagatctcgc--tcttgctca-ggctggtctcttaactcctgagctcaagtgatcctcctgcctcagcctcccagagtgttaggattgtaggcgtgagccactgcaccgggcc-------------------------AGTAATACACCTTT------------------------------------------------
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 936588 3082 - 119751181 I
e proCoq1.NW_012149419v1       660169 2391 -   2566024 I
e mm10.chr9                  55192598 585 + 124595110 I
e dasNov3.JH569975              62614   9 -   2180720 I
e canFam3.chr30                 63257   1 -  40214260 I
e cebCap1.NW_016107979v1       308119 228 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078   0 + 169600520 C

a score=36878.000000
s hg38.chr15_KI270850v1_alt    203466 11 +    430880 cAATATTGTGT
s panTro5.chr15              18013148 11 -  83230942 CAATTTTGTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17239409 11 -  99763055 CAATTTTGTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       302085 11 +    378907 caatattgtgt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102157611 11 + 121039945 cAATATTGTGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107360230 11 - 171882078 caatattgtgt
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7485213 11 -   9444221 CAATATTGTTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18026776 11 + 132174527 cagttttgttt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             523333 11 -   3282555 TAATCTTATTT
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       754063 11 -   3745603 caatcttattt
i aotNan1.NW_018511953v1    C 0 C 0
s dasNov3.JH569975              62623 11 -   2180720 CAATATTGCTT
i dasNov3.JH569975          I 9 C 0
e micMur3.chr3                 936588 3082 - 119751181 I
e proCoq1.NW_012149419v1       660169 2391 -   2566024 I
e mm10.chr9                  55192598 585 + 124595110 I
e canFam3.chr30                 63257  1 -  40214260 I
e cebCap1.NW_016107979v1       308119 228 -   1024465 I
e otoGar3.GL873530            6777471  0 -  36342412 C
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=2739.000000
s hg38.chr15_KI270850v1_alt    203477 1 +    430880 T
s panTro5.chr15              18013159 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17239420 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       302096 1 +    378907 t
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102157622 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107360241 1 - 171882078 t
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7485224 1 -   9444221 T
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18026787 1 + 132174527 c
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             523344 1 -   3282555 C
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       754074 1 -   3745603 c
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  55193183 1 + 124595110 T
i mm10.chr9                 I 585 C 0
s dasNov3.JH569975              62634 1 -   2180720 T
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 936588 3082 - 119751181 I
e proCoq1.NW_012149419v1       660169 2391 -   2566024 I
e canFam3.chr30                 63257 1 -  40214260 I
e cebCap1.NW_016107979v1       308119 228 -   1024465 I
e otoGar3.GL873530            6777471 0 -  36342412 C
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078 0 + 169600520 C

a score=419712.000000
s hg38.chr15_KI270850v1_alt    203478 74 +    430880 TT----AAGAGTCTACTTACCCGACGCCTGCAGTCTAAT-CTTTGCCATATCTTCCCAAATGTTCTGTGAGTGCTAATA
s panTro5.chr15              18013160 74 -  83230942 TT----AAGAGTTTACTTACCTGACGCCTGCAGCCTAAT-CTTTGCCATATCTCCCCAAATGTTCTGTGAGTGCTAATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17239421 74 -  99763055 TT----AAGAGTTTACTTACCTGACGCCTGCAGCCTAAT-CTTTGCCATATCTCCCCAAATGTTCTGTGAGTGCTAATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       302097 78 +    378907 ttaaGAAAGAGTCTACTTACCCGACGCCTGCAGCCTAAT-CTTTGCCATATCTCCCCAAATGTTCTGTGAGTGCTAATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102157623 74 + 121039945 TT----AAGAGTTTACTTACCTGATGCCTGCAGCCTAAT-CTTTGGCATATCTCCCCAAATGTTCTGTGAGTGCTAATA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107360242 74 - 171882078 tT----AAGAGTTTACTTACCTGAGGCCTGCAGCCTAAT-CTTTGCCATATCTCCCCAAGTGTTCTGTGAGTGCTAATA
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7485225 74 -   9444221 TT----AAGAGTTTACTTACCTGACACCTGCAGCCTAAT-CTTTGCCATATTTCCCAAAATGTTCTGTGAGTGCCGATA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18026788 74 + 132174527 tT----AAGGGTTTACTTACCTGACACCTGTAGCCTAAT-CTTTGCCATATCCCCCAAAATATCCTGTGAGTGCTAATA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             523345 74 -   3282555 TT----AAGGATTTACTTACTTGACACCTGTAGCCTAAT-CTTTGCCATACCCCCGAAAATATTCTGTGAGTGCCAGTA
i saiBol1.JH378276          C 0 I 317
s cebCap1.NW_016107979v1       308347 74 -   1024465 TT----AAGGGTTTACTTATCTGACACCTGTAGCCTAAT-CTTTGCCATATTCCCCAAAATATTCTGTGAGTGCTAATA
i cebCap1.NW_016107979v1    I 228 C 0
s aotNan1.NW_018511953v1       754075 74 -   3745603 tt----AAGAGTTTACTTACCTGACACCTGTAGCCTAAT-CTTTGCCATATCCCCCAAAATATTCTGTGAGTGCTAATA
i aotNan1.NW_018511953v1    C 0 I 324
s otoGar3.GL873530            6777471 63 -  36342412 TT----AAGAGTTTGCTTACCTGATATCTGCAGC------------CACATCCCTCAGGATGTTCTGTGAGTACTTGTA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55193184 68 + 124595110 TT----AACAGATGACTTAGGTGGTCCCTGCAGCCTGCTCCTTTGTTACATCTTCCAGAAAGTTATGTG-------GTA
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              62635 75 -   2180720 TT----TAGAGTTTATTTACCTGATATCCACAGTCTTATCCTTTGTTGTATCTCCCATAATTTTCTGTGAGCACTGGAA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 936588 3082 - 119751181 I
e proCoq1.NW_012149419v1       660169 2391 -   2566024 I
e canFam3.chr30                 63257  1 -  40214260 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=39170.000000
s hg38.chr15_KI270850v1_alt    203552 6 +    430880 TAGTGG
s panTro5.chr15              18013234 6 -  83230942 TAGTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17239495 6 -  99763055 TAGTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       302175 6 +    378907 TAGTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102157697 6 + 121039945 TAGTGG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107360316 6 - 171882078 TAGTGG
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7485299 6 -   9444221 TAGTGG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18026862 6 + 132174527 TAGTGG
i calJac3.chr10             C 0 I 327
s saiBol1.JH378276             523736 6 -   3282555 TAGTGG
i saiBol1.JH378276          I 317 C 0
s cebCap1.NW_016107979v1       308421 6 -   1024465 TAGTGG
i cebCap1.NW_016107979v1    C 0 I 2599
s aotNan1.NW_018511953v1       754473 6 -   3745603 TAGTGG
i aotNan1.NW_018511953v1    I 324 C 0
s otoGar3.GL873530            6777534 6 -  36342412 CAATTG
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55193252 6 + 124595110 TATTAG
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              62710 6 -   2180720 CAATGG
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 936588 3082 - 119751181 I
e proCoq1.NW_012149419v1       660169 2391 -   2566024 I
e canFam3.chr30                 63257 1 -  40214260 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078 0 + 169600520 C

a score=1567476.000000
s hg38.chr15_KI270850v1_alt    203558 387 +    430880 TATGGTAATAGATATTTGTTTTGTGGAGATTGCAAGGTTTTGGGGAA--CCAGGTTCAA-AATGTCTTTTACCAAAG-----------------------------------GACT-TCTTGGAG-CCTTAATGCCATTTTC------------------------------------------TGTTTTTCCCAAATTTGTTTAT------TAGTGTT-----------------------CCTG----ACAGCATCTCAGAGGATGGTGTCCTCTGGCTTACTCTCTGGGAAATGCTGCTCTGTTGGAAATCCGGAGTTCTGAGTGATCCCCATGCGTTTTCTGCTGCAGAGCAGGACATGCTGAAGT---GATTCCTTCGTGAGCAGA-------------------------TGTTAGAGGT------CTCCCTTTGACAGCTTGTTACAAAGTTGATCACGAATATACTATTACGGTGAGT-GGAAGTCCCAGG----TTG----GGTGTG---AAGCAGAGTTGTTTAGAATTGTGTAC-----TAT
s panTro5.chr15              18013240 383 -  83230942 TATGGTAATAGATATTTGTTTTGTGGGGATTGCAAGGTTTTGGGGAA-GGCAGCTTCAA-AATGTCTTTTACCAAAG-----------------------------------GACT-TCTTGGAG-CCTTAATGCCATTTTC------------------------------------------TATTTTTCCCAAATTTGTTTAT------TAGTGTT-----------------------CCTG----A---CATCTCAGAGGATGGTGTCTTCTGGCTTA--CTCTGGGAAATGCTGCTCTGTTGGAAATCTGGAGTTCTAAGTGATCCCCATGCGTTTTCTGCTGCAGAGCAGGACATGCTGAAGT---GATTCCTTCGTGAGCAGA-------------------------TATCAGAGGT------CTCCCTTTGACAGCTTGTTACAAAGTTGATCACAAATATACTATTACGGGGAGT-GGAAGTCCCAGG----TTG----GGTGTG---AAGCAGAGTTGTTTAGAATTGTGTAC-----TAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17239501 383 -  99763055 TATGGTAATAGATATTTGTTTTGTGGGGATTGCAAGGTTTTGGGGAA-GGCAGCTTCAA-AATGTCTTTTACCAAAG-----------------------------------GACT-TCTTGGAG-CCTTAATGCCATTTTC------------------------------------------TATTTTTCCCAAATTTGTTTAT------TAGTGTT-----------------------CCTG----A---CATCTCAGAGGATGGTGTCTTCTGGCTTA--CTCTGGGAAATGCTGCTCTGTTGGAAATCTGGAGTTCTAAGTGATCCCCATGCGTTTTCTGCTGCAGAGCAGGACATGCTGAAGT---GATTCCTTCGTGAGCAGA-------------------------TGTCAGAGGT------CTCCCTTTGACAGCTTGTTACAAAGTTGATCACAAATATACTATTATGGGGAGT-GGAAGTCCCAGG----TTG----GGTGTG---AAGCAGAGTTGTTTAGAATTGTGTAC-----TAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       302181 387 +    378907 TATGGTAATAGATATTTGTTTTGTGGGGATTGCAAGGTTTTGGGGAA--CCAGGTTCAA-AATGTCTTTTACCAAAG-----------------------------------GGCT-TCTTGGAG-CCTTAATGCCATTTTC------------------------------------------TATTTTTCCCAAATTTGTTTAT------TAGTGTT-----------------------CCTG----ACAGCATCTCAGAGGATGGTGTCCTCTGGCTTACTCTCTGGGAAATGCTGCTCTGTTGGAAATCCGGAGTTCTGAGTGATCCCCATGTGTTTTCTGCTGCAGAGCAGGACATGCTGAAGT---GATTCCTTCGTGAGCAGA-------------------------TGTCAGAGGT------CTCCCTCTGACAGCTTGTTACAAAGTTGATCACGAATATACTGTTATGGTGAGT-TGAAGTCCCAGG----TTG----GGTGTG---AAGCAGAGTTGTTTAGAATTGTGTAC-----TAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102157703 388 + 121039945 TATGGTAATAGATATTTGTTTTGTGGGGATTGCAAGGTTTTGGGGAA-GCCAGCTTCAA-AATGTCTTTTACCAAAG-----------------------------------GACT-TCTTGGAG-CCTTAGTGCCATTTTC------------------------------------------TGTTTTTCCCAAATATGTTTAT------TAGTGTT-----------------------CCTG----ACAGCATCTCAGAAGATGGTGTCCTCTGGCTTACTCTCTGGGAAATGCTGCTCTGCTGGAAATCCGGAGTTCTGAGTGATCCCCATGCGTTTTCTGCTGCAGAGCAGGACATGCTGAAGT---GATTCCTTCCTGAGCAGA-------------------------TGTCAGAGGT------CTCCCTTTGACAGCTTGTTACAAAGTTGATCACAAATATACTATTACGGTGAGT-GGAAGTCCCAGG----TTG----GGTGTG---AAGCACAGTTGTTCAGAATTGTGTTC-----TAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107360322 393 - 171882078 TATGTTCATAGATATTTGTTTTGTGGGGATTGCAAGGATTTGGGGAA-GCCAGGTTCAA-AGTGTCTTTTACCAAAG-----------------------------------GACT-TCTTGGAAGCCTTAATGCCATTTTC------------------------------------------TGTTTTTCCCAAATTTGTTAAT------TAGTGCT-----------------------CCTG----ACAGCATCTCAGAGGACAATGCCCTCTGGCTTACTCTCTAGGAAATGCTGCTCTGTTGGAAATCCGGAGTTCTGAGTGATTCCCATGTGTTTTCTGCTGCACAGCAGGACATGCTGAAGT---GATTCCTTCATGAGCAGA-------------------------TGTTAGAGGT------CTCCTTTTGACAGCTTGTTACAAAATTGATCACAAATATACTATTA-GGTGAGT-GTAAGTCCCCGG----TTG----GGTGTG---AAGCAGAGTTGTTTAGAATTGTGTACTGTTTTAT
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7485305 427 -   9444221 TATGTTAATATATATTTGTTTTGTGGGGATTTCAAGGTTTAGGAAAA-GCCAGGTTCAA-AATGTCTTTTACCAAAATGTCTTTGGTAAAAGTCATTTGTCTTTTACCAAATGACT-TCTTGGAG--CCTAATGCTATTTTC------------------------------------------TATTTTTCCCAAATTTGTTTAA------TAATGTT-----------------------CCCG----ACAGCATCTCAGAGGATAGTGTCCTCTGGCTTACTCTCTGGGAAATGCTGCTCTGTTGGAAATCCAGAATTCTGAGTGATTCCCATGTGTTTTCTTCCGCAGAGTAGGAAATGCTGAAGT---GACCTCTTAGTGGGCAGA-------------------------TGTTACAGGT------CTCCTTTTGACAGGTTGTTACAAAGTTGATCACAAATATACTATTACAGTGAGT-GGCAGTCCCAGG----TTG----GGTGTG---AAGCAGAGTTGTTTAGAATTGTGTACTGTTTTAT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18027195 402 + 132174527 TTTGTTAATAGATGTTTGTTTTGAGGGGATTGCAAGGTTTTGGGAAA-GCCAGGTTCAA-AATATCTTTTACCAAAG-----------------------------------GACT-TCTAGGAG-ACTTAATGCTGttttc-----t--------------------------tttttttttttttttttttCAAATTTGTTTAA------TAATTTA-----------------------CATG----ATAGCTTCTCAGAGGATGGTGTGCTCTGGCTTACCCTCTGGGAAATGCTGCTCTGTTGGAAATTTCCAGTTTTGAGTGATTCCCACGTGTTTTCTGCTGCAGAGCAGGAAATGCTGAAGC----ATTCCCTCA-GAGCAGA-------------------------TGTTACAAGT------CTCCTTTTGACACGTTGTTACAGAGTTGATCACAAGTGTAGTATTACAGTGAGT-GGAAGTCCCAGG----TTG----GGTTTG---AAACAGAGTTGTTTAGAATTGTGTACAGTTTTAT
i calJac3.chr10             I 327 C 0
s saiBol1.JH378276             523742 401 -   3282555 TTTGTTAATAGATGTTTGTTTTGAGGGGATTGCAAGGTTTTGGGAAA-ACCAGGTTCAA-AATACCATTTACCAAAA-----------------------------------GACT-TCTTGGAG-ACTTAATGCTGttttc--------------------------------ttttcttttttttttttttcAAATTTGTTTAA------TAATTTA-----------------------CATG----ATAGCATCTCAGAGGATGGTGTGCTCTGGCATACTCTCTGGGAAATGCTGCTGTATTGGAAA-TTAGAGTTTTGAGTGATTCCCACGAGTTTTCTGCTGCAGAGCAGGAAATGCTAAAGT---GATTCCCTCA-GAGCAGA-------------------------TGTTACAAGT------TTCCTTTTGACAGGTTGTTACAGAGTTGATCACAAGTATACTATTACAGTGAGT-GGAAGTCCCTGG----TTG----GGCTTG---AAACAGAGTTGTTTAGGATTGTGAACAGTTTTAT
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       754479 398 -   3745603 TTTGTTAATAGATGTTTGTTTTGAGGGGATTGCAAGGTTTTGGGAAA-ACCAGGTTCAA-AATATCTTTTACCAAAG-----------------------------------GACT-TCTTGGAG-ACTTAATGCTGttttc-----t--------------------------ttttttttttttttttttCCAAATTTGTTTAA------TAATTTA-----------------------TGTG----ATAGCATCTCAGAGGATGGTGTGCTCTGGCTTACCCTCTGGGAAATGCTGCTGTGTTGGAAATCCGGAGTTTTGAGTGATTCCCACGTGTTTTCTGCT-----GCAGGAAATGCTGAAGT---GATTCCCTCA-GAGCAGA-------------------------TGTTACAAGT------CTCCTTTTGACAGGTTGTTACAGAGTTGATCACAAGTATACTATTACAGTGAGT-GGAAGTCCCAGG----TTG----GGTTTG---AAACAGAGTTGTTTAGAATTGTGTACAGTTTTAT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6777541 407 -  36342412 TATATTAATACATACTTGTTTTGAAAGGATTGTAGGATTTTCGGAAA--CCAGGCTCAA-ACTATTCTTTACAAAAG-----------------------------------GACTCTCTTGGAG-CCTTAATGTGACTTTCCAACAT--------------------------GATGGTAAACAGATTTTCCCAGATTTATCTAA--TTTGTAATTTT-----------------------TTTATCCCACAGCATGTCAGAGGATGCTGTCTTCTTGTTTTAGCTTT-GAAAATGCTACTGTGTTAGAAATCCAGAGTTCTGAGTGACTCCCATAGGTTTTCTGCTGGAGAGCAAGAAAAGCTGAAGTAATAATCCCTTAGTGAGCCAA-------------------------CTTCAG-GGT------CTTTTGTTGATAGGCTGTTATGGAGTTGATCACAAG-----------GATGAGT-GGAAGTCATAGGGTAATTG----AGCATG---AAACAAAGTTGTTTAA----GTGTAAAATTTCAT
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  55193258 378 + 124595110 ------------------------------------GCCTTATGAAC-ATCAAGCTCAATGATACTCATTCCAAAGG-----------------------------------GACT-TGTTGAAG-ACTTGGTGTGAATTTT-----TCCCCCCCACAAAGTCACTAAATAACAGCTCCTATTCTGTTTTCCACAAATCACTTAATAACTTCTAATTTTTTGT-----------------GGCCTG----TTGGCATCTCAGAAGATGGCATCCTCTGGTTTACTGTTTGGGAAATGTTGCTCTTTCAGAAACCCAAAATCTTGAGCGATCCTCA------------------GCAAG----GCTGAAGT---GATCCCTT-------AGA-------------------------CATCTTGCTT------CTGCTTTTGGCAAACAGTTACAACGCTGATCACAAA--TGCTGTTAGGCTGAGTGGGAAATCACACA----CTC----AGAGGGCACACACAAAGATGTTTCAAGTTGTCAAG--TTTCAT
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              62716 457 -   2180720 GGTGATCAGATGAGTTTTTTTTAAAAGGACTGCAGGGATTTGGGAAATGCCAGACTCAA-AATATTCTTTACTGAAG-----------------------------------AGCT-TCTTGGAG-TGTTAAAAGACTTTCC-------------------------AAAAGAACATATTAAACAGTTTCTCCCAAGTATATTTAA-----GTAATCTTTTTTTCCCTCTCCTATATTTGAACCCC----ACAGTTCCTAGGAGGATGCCATCCTCTGGTTTGCTTTTTGGGAAATGCTGTACTTTTGGAATTCTAGAATTCTGAGTGATTCCCATGTGCTTTCTACTGTAGAGCAAGAACAGCTGAAGC---AGTCCCCTTGTGGATAGACTCCCTGTGGGGGTCTGCAAACCCCTGCTAAAAATACTTGGTTCATTTTGACAAGCTATTACAAAGCTGATCACAAATATACTGT---AATGACT-GGATGTCACAGG----TTAACTTAGTAGG---AAACA-----GTTTAGAATTGTTCAAAGT-----
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 936588 3082 - 119751181 I
e proCoq1.NW_012149419v1       660169 2391 -   2566024 I
e canFam3.chr30                 63257   1 -  40214260 I
e cebCap1.NW_016107979v1       308427 2599 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078   0 + 169600520 C

a score=332948.000000
s hg38.chr15_KI270850v1_alt    203945 61 +    430880 ---TTT----GTTACCTTTAAAGCTTCTC-TAGGCTG-TTTTGGTTTTGGCAGTAAAATTGCTATAAAAA
s panTro5.chr15              18013623 61 -  83230942 ---TTT----GTTACCTTTAAATCTTTTC-TAGGCTG-TTTTGGTTTTGGCAGTAAAATTGCTATAAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17239884 61 -  99763055 ---TTT----GTTACCTTTAAATCTTTTC-TAGGCTG-TTTTGGTTTTGGCAGTAAAATTGCTATAAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       302568 61 +    378907 ---TTT----GTTACCTTTAAAGCTTCTC-TAGGCTG-TTTTGGTTTTGGCAGTAAAATTGCTATAAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158091 61 + 121039945 ---TTT----GTTACCTTTAAAGCTTCTC-TAGGCTG-TTTTGGTTTTGGCAGTGAGATTGCTTTAAAAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107360715 61 - 171882078 ---TTT----GTTACCTTTAAATCTTCTC-TGGGCTG-TTTTGGTTTCAGCAGTAAAATTGCTATAAAAA
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7485732 61 -   9444221 ---TTT----GTTACCTTTAGAGCTTCTC-TAGACTG-TTTTGGTTTAGGCAGTAAAATTGCTATAAAAA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18027597 62 + 132174527 ---TTT----GTTACCTTTAAAGCTTCCC-TATACTGTTTTTAGATTGGGCAGTAAAATTGCTATAAAAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             524143 62 -   3282555 ---TTT----GTTACCTTTAAAGCTTCCC-TATACTGTTTTTGGATTAGGCAGTAAAATTGCCATAAAAA
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       754877 62 -   3745603 ---TTT----GTTACCTTTAAAGCTTCCC-TATACTGTTTTTGGATTAGGCAGTAAAATTGCTATAAAAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 939670 61 - 119751181 ---TTT----GTTACCTTTAAGGCTGTCC-TAGACTG-TTTTGGATTAGGCAGTAAAAGTGTTATAAAAA
i micMur3.chr3              I 3082 I 144
s otoGar3.GL873530            6777948 61 -  36342412 ---TTT----GTTACTTCTAAGGCTTTCT-TGTACTG-TTTTGGATTAGGCAGTAAAAGTGCTGTAAAAA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55193636 48 + 124595110 ---TTC----GTTACCTTTAAACATTCCCGCATGC---TTCTGGGTTAGGCAGTGAAG------------
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              63173 68 -   2180720 TTCTTTGCAAGTTAACTTTAAAGCTTTAC-TAGGTTG-TTTTGGATTAGGAAATAAAGGTATTCTTTAGA
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       660169 2391 -   2566024 I
e canFam3.chr30                 63257  1 -  40214260 I
e cebCap1.NW_016107979v1       308427 2599 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=678376.000000
s hg38.chr15_KI270850v1_alt    204006 138 +    430880 GTACTTCTCTTGGCATACAACCTAATGGTCAGTTTTGGAAGTT-CAGTGTTAAGTAACCCAGCCAAATACTTACGTATACAAAATAAA----CACAAGAC-TGAAAAATAGTAA-ATGTTTAACCT---------TTGCTCAC-TACAGCAGGCT-
s panTro5.chr15              18013684 146 -  83230942 GTACTTCTCTTGGCATACAACCTAATGGTCAGTTTTGGAAGTT-CAGTGTTAGGTAACCCAGCCAAATACTTACGTATACAAAATAAA----CACAAGAC-TGAAAAATAGTAA-ATGTTTAACCTTTGTGTCTCTTGCTCAC-TACAGCA-GCC-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17239945 146 -  99763055 GTACTTCTCTTGGCATACAACCTAATGGTCAGTTTTGGAAGTT-CAGTGTTAGGTAACCCAGCCAAATACTTACGTATACAAAATAAA----CACAAGAC-TGAAAAATAGTAA-ATGTTTAACCTTTGTGTCTCTTGCTCAC-TACAGCA-GCC-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       302629 147 +    378907 GTACTTCTCTTGGCATAAAACCTCATGGTCAGTTTTGGAAGTT-CAGTGTTAGGTAACCCAGCCAAATACTTACGTATACAAAATAAA----CACAAGAC-TGAAAAATAGTAA-GTGTTTAACCTTTGTGTCTCTTGCTCAC-TACAGCAGGCT-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158152 146 + 121039945 GTACTTCTCTTGGCATAAAACCTAATGGTCAGTTTTGGAAGTT-CAGTGTTAGGTAACCCAGCCAAATACTTACATATACAAAATAAA----CACAAGAC-TGAAAAATAGTAA-ATGTTTAACCTTTGTGTCTCTTGCTCAC-TACCGCA-GCC-
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107360776 146 - 171882078 GTACTTCTCTTGGCATAAAACCTCATGGTCAGTTTTGGAAGTT-CAGTGTTAGGTAACCCAGCCAAATACTTACGTATACAAAATAAA----CACAAGAC-TGAAAAATAGCAA-ATGTTTAACCTTTGTGTCTCTTACTCAC-CATACCA-GCC-
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7485793 146 -   9444221 GTACTTCTCTTGACATAAAACCTCATGGTCGGTTTTGGAAGTT-GAATGTTAGGTAACCCAACCAAATACTTATGTATGCAAAATAAA----CACAAGAC-TGAAAAATACTAA-ATGTTTAACCTTTGTGTCTCTTGCTCAC-CACACCA-GCC-
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18027659 145 + 132174527 GTACTTCTTTTGTCATAAAACCTAATGAT-AGTTTTGGAAGTT-GAATGTTAGGTAACTCAGCCAAATATTTACATATACAAAATAAA----CCCAAGAC-TGAAAAATAGTAA-ATTTTTAACCTTTCTGTCTCTTGTTTAC-AACACCA-GCC-
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             524205 147 -   3282555 GTACTTCCCTTGTCATAAAACCTAATGATCAGTTTGGGAAGTT-GAATGTTAGGTAACTCAGCCAAGTATTTACATATACAAAATAAA----CCCAAGACTTGAAAACTAGTAA-ATTTTTAACTTTTCTGTCTCTTGTTCAC-AACACCA-GCC-
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       754939 146 -   3745603 GTACTTCTCTTGTCATAAAACCTAATGATCAGTTTTGGAAGTT-GAATGTTAGGTAACTCAGCCAAATATTTACATATACAAAATAAA----CCCAAGAC-TGAAAAATAGTAG-ATTTTTAACCTTTCTGTCTCTTGTTCAC-AACACCA-GCC-
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6778009 129 -  36342412 --------------CTAAAGC----TGATCAATTTTGGAAGCTGGAAAGTTAGATAACCTAGCCAAATATTTATATATGCAGAATTAA----CCCAGAAC-TGAAAAATGATAATTTTTTTAACCTTTGTGTCTCTTGCTTAG-C-TATCA-GCC-
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55193684 145 + 124595110 GTAGTTTTTCTATCATAAAGCCC-ATGGCTATTTTTGGAAGGA-GAATATTAGGTAACCTAGCCAAATATTTACATACACAAAATAAA----CATAGGGT-GGAAATATAGTGA-ATTTTAAACTTTTGTATCCCTTCCTCAG-AACACCA-GCC-
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              63241 143 -   2180720 GTACCTTCTCTACCATAAAGCCTCATGACAAATTTTGGAAGTT-----ATTAGATAATATGGC----TATTTACATGCTCAAAATAAAAATTCATATGAC-TGAAAAATGGTAA-ATTTTTAACCT-TGTGTTTCTTTCTCATGTATGGCA-TCCT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 939731 144 - 119751181 I
e proCoq1.NW_012149419v1       660169 2391 -   2566024 I
e canFam3.chr30                 63257   1 -  40214260 I
e cebCap1.NW_016107979v1       308427 2599 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078   0 + 169600520 C

a score=186644.000000
s hg38.chr15_KI270850v1_alt    204144 27 +    430880 TTTTACTAGCCA--CCAAGCCATAGTTCT
s panTro5.chr15              18013830 27 -  83230942 TTTAACTAGCCA--CCAAGCCATAGTTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240091 27 -  99763055 TTTAACTAGCCA--CCAAGCCATAGTTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       302776 27 +    378907 TTTTACTAGCCA--CCAAGCCATAGTTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158298 27 + 121039945 TTTTACTAGCCA--CCAAGCCATAGTTCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107360922 27 - 171882078 TTTTACTAGCCA--CCAAGCCATAGTTCT
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7485939 27 -   9444221 TTTTACTTGTTA--CCAGGCCATAGTTCT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18027804 27 + 132174527 TTTTACTAGCCA--CTAAGCCATAGTTCT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             524352 27 -   3282555 TTTTACTAACCA--CCAAGCCATAGTTCT
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       755085 27 -   3745603 TTTTACTAGTCA--CCAAGCCATAGTTCT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 939875 27 - 119751181 TTTTAGTAGCCA--CCAAGTTGTAGTTCT
i micMur3.chr3              I 144 C 0
s proCoq1.NW_012149419v1       662560 27 -   2566024 TTTTACTAGCCA--CCAAGTTGTAGTTCT
i proCoq1.NW_012149419v1    I 2391 C 0
s otoGar3.GL873530            6778139 25 -  36342412 --TTTCTAGCCA--CCAAGTCGTAGTTCT
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  55193829 29 + 124595110 CTTTCCTAGCCAAGTGTAACAACATTAAT
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              63384 27 -   2180720 TTTTCCTAGTCA--TCAAGCCATAATTCT
i dasNov3.JH569975          C 0 C 0
e canFam3.chr30                 63257  1 -  40214260 I
e cebCap1.NW_016107979v1       308427 2599 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5358658 1697 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=98874.000000
s hg38.chr15_KI270850v1_alt    204171 12 +    430880 TTTGTTTTTCAT
s panTro5.chr15              18013857 12 -  83230942 TTTGTTTGTCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240118 12 -  99763055 TTTGTTTGTCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       302803 12 +    378907 TTTGTTTTTCAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158325 12 + 121039945 TTTGTTTTTCAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107360949 12 - 171882078 TTTGTTTTTCAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5360355 12 -   6271500 TTTGTTTTTCAT
i macNem1.NW_012011056v1    I 1697 C 0
s colAng1.NW_012112253v1      7485966 12 -   9444221 TTTGTTTTTCAT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18027831 12 + 132174527 TAAGTTTTTCAT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             524379 12 -   3282555 TATGTTTTTCAT
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       755112 12 -   3745603 TATGTTTTTCAT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 939902 12 - 119751181 TGTGTTTTTCAT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       662587 12 -   2566024 TGTGTTTTTCAT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6778164 12 -  36342412 TATGTTTTTCAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55193858 10 + 124595110 --TTTTTTTTAC
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              63411 12 -   2180720 TACGTTTTTCAt
i dasNov3.JH569975          C 0 I 326
e canFam3.chr30                 63257  1 -  40214260 I
e cebCap1.NW_016107979v1       308427 2599 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=107880.000000
s hg38.chr15_KI270850v1_alt    204183 26 +    430880 AG--TTGAATGTTAAAAT-----GTC-TTTTTAA
s panTro5.chr15              18013869 26 -  83230942 AG--TTGAATTTCAAAAT-----GTC-TTTTTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240130 26 -  99763055 AG--TTGAATTTCAAAAT-----GTC-TTTTTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       302815 26 +    378907 AG--TTGAATGTTAAAAT-----GTC-TTTTTAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158337 26 + 121039945 AG--TTGAATGTTAAAAT-----GTC-TTTTTAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107360961 31 - 171882078 AG--TTGAATGTTAAAATGTAAGGGC-TTTTTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5360367 27 -   6271500 GGGTTTGAATGTTAAAAT------GC-CTTTTAA
i macNem1.NW_012011056v1    C 0 C 0
s colAng1.NW_012112253v1      7485978 25 -   9444221 AG--GTGAATGTCAAATG------TC-TTTTTAA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18027843 24 + 132174527 AG--TTTAATGTTAAAAT-----ATC---TTTAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             524391 24 -   3282555 AG--TTTAATGTTAAAAC-----ATC---TTTAA
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       755124 24 -   3745603 AG--TTTAATGTTAAAAT-----ATC---TTTAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 939914 26 - 119751181 TG--TTTCATGTGAAGAT-----ATC-TTTTTTA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       662599 26 -   2566024 TG--TTTTATGTTAAAAT-----ATC-TTTTTTG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6778176 27 -  36342412 CA--TTTCATGTTAAAAT-----ATTACTTTTTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55193868 26 + 124595110 AG--TTTAGTGTTGCTAT-----AAC-ATTGTAA
i mm10.chr9                 C 0 I 813
s dasNov3.JH569975              63749 26 -   2180720 AG--TTTAATTTTAAAAT-----TCC-TTTCCTT
i dasNov3.JH569975          I 326 C 0
e canFam3.chr30                 63257  1 -  40214260 I
e cebCap1.NW_016107979v1       308427 2599 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=205519.000000
s hg38.chr15_KI270850v1_alt    204209 37 +    430880 TGAAGCC-CTTACTG---ATTGGGGAGAAAG---GACATAAGTA
s panTro5.chr15              18013895 40 -  83230942 TGAAGCC-CTTCCTG---ATTGGGGAGAAAGGACGACATAAGTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240156 40 -  99763055 TGAAGCC-CTTCCTG---ATTGGGGAGAAAGGACGACATAAGTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       302841 37 +    378907 TGAGGCC-CTTACTG---ATTGGGGAGAAAG---GACATAAGTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158363 37 + 121039945 TGAAAGC-CTTACTG---ATTGGGGAGAAAA---GACATAAGTA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107360992 37 - 171882078 TGAAGCC-CTTACTG---ATTGGGGAGAAAA---GACATTAGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5360394 40 -   6271500 TGAAGCC-CTTACTGGAAAATGGTGAGAAAA---GACATAAGTA
i macNem1.NW_012011056v1    C 0 C 0
s colAng1.NW_012112253v1      7486003 37 -   9444221 TGAATCC-CTTACTG---ACTGGGGAGAAAA---GACATAAGTA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18027867 37 + 132174527 TGAAACC-TTTACTA---ATTGGGGAGAAAT---GACGTAACTA
i calJac3.chr10             C 0 I 324
s saiBol1.JH378276             524415 37 -   3282555 TGAAGCC-TTTACTA---ATTGGGGAAAAAC---AACATAACTA
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       755148 37 -   3745603 TGAAGCC-TTTACTA---ACTGGGGAGAAAT---GACATAACTA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 939940 34 - 119751181 TGAAGCC-TTTACTG---ATTGGGGAGAA-----GGCAT-ACTG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       662625 34 -   2566024 TGAAGCC-TTTACTG---ATTGGGGAGAA-----GACAT-ACTG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6778203 36 -  36342412 TAAAGCCTTTTACTG---ATTGGGGACAA-----GACATAATTG
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              63775 35 -   2180720 TGAAGCC-TTTATTG---ACTGCAGGGTA-----AAGATGACTA
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e canFam3.chr30                 63257  1 -  40214260 I
e cebCap1.NW_016107979v1       308427 2599 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=19447.000000
s hg38.chr15_KI270850v1_alt    204246 3 +    430880 TTG
s panTro5.chr15              18013935 3 -  83230942 TTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240196 3 -  99763055 TTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       302878 3 +    378907 TTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158400 3 + 121039945 TTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361029 3 - 171882078 TTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5360434 3 -   6271500 TTC
i macNem1.NW_012011056v1    C 0 C 0
s colAng1.NW_012112253v1      7486040 3 -   9444221 TTG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18028228 3 + 132174527 TTG
i calJac3.chr10             I 324 C 0
s saiBol1.JH378276             524452 3 -   3282555 TTG
i saiBol1.JH378276          C 0 I 328
s aotNan1.NW_018511953v1       755185 3 -   3745603 TTG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 939974 3 - 119751181 TGG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       662659 3 -   2566024 TGG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6778239 3 -  36342412 TTA
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              63810 3 -   2180720 TTG
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e canFam3.chr30                 63257 1 -  40214260 I
e cebCap1.NW_016107979v1       308427 2599 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e rheMac8.chr7               60364078 0 + 169600520 C

a score=30555.000000
s hg38.chr15_KI270850v1_alt    204249 3 +    430880 TGC
s panTro5.chr15              18013938 3 -  83230942 TGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240199 3 -  99763055 TGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       302881 3 +    378907 TGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158403 3 + 121039945 TGC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361032 3 - 171882078 TGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5360437 3 -   6271500 TGC
i macNem1.NW_012011056v1    C 0 C 0
s colAng1.NW_012112253v1      7486043 3 -   9444221 TGC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18028231 3 + 132174527 TGC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             524783 3 -   3282555 TGC
i saiBol1.JH378276          I 328 C 0
s aotNan1.NW_018511953v1       755188 3 -   3745603 TGC
i aotNan1.NW_018511953v1    C 0 I 328
s micMur3.chr3                 939977 3 - 119751181 TGC
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       662662 3 -   2566024 TGC
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6778242 3 -  36342412 TGC
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              63813 3 -   2180720 TGC
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e canFam3.chr30                 63257 1 -  40214260 I
e cebCap1.NW_016107979v1       308427 2599 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e rheMac8.chr7               60364078 0 + 169600520 C

a score=174386.000000
s hg38.chr15_KI270850v1_alt    204252 28 +    430880 ---TTTAGTTTTATG-TGCTGGTTTATAAAAT
s panTro5.chr15              18013941 28 -  83230942 ---TTTAGTTTTATT-TGCTGGTTTATAAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240202 28 -  99763055 ---TTTAGTTTTATT-TGCTGGTTTATAAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       302884 28 +    378907 ---TTTAGTTTTATG-TGCTGGTTTATAAAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158406 28 + 121039945 ---TTTAGTTTTATG-TGCTGGTTTATAAAAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361035 28 - 171882078 ---TTTAGTTTTATG-CACTGGTTTATAAAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5360440 29 -   6271500 ---TGTAGTTTTATGCCGCTGGTTTATAAAAT
i macNem1.NW_012011056v1    C 0 I 166
s colAng1.NW_012112253v1      7486046 27 -   9444221 ---TTTA-CTTTATG-TGGTGGTTTATACAAT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18028234 28 + 132174527 ---TTTAGTTTTATG-CACTTGTTTATAAAAT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             524786 28 -   3282555 ---TTTAGTTTTATG-CACTTGTTTATAAAAT
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       755519 28 -   3745603 ---TTTAGTTTTATG-AACTTGTTTATAAAAT
i aotNan1.NW_018511953v1    I 328 C 0
s micMur3.chr3                 939980 26 - 119751181 ---TTTAGTTTTGTG---CTTGTTCATAAAAT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       662665 26 -   2566024 ---TTCAGTTTTGTG---CTTGTTCATAAAAT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6778245 26 -  36342412 ---TTTAGTTTTAAG---CTTGTTTATAAAGT
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              63816 31 -   2180720 TTTTTTATTTATATG-CACTTGTTCATATAAT
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e canFam3.chr30                 63257  1 -  40214260 I
e cebCap1.NW_016107979v1       308427 2599 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=414374.000000
s hg38.chr15_KI270850v1_alt    204280 82 +    430880 TGTGT-ATGTTGACTCAATATCCCCATAAGCATAGGGAAAGGAAAACGGGTCA-TGTTTTGTTCAGAATCTTATTTGAG-A-AAAA
s panTro5.chr15              18013969 83 -  83230942 TGTGT-ATGTTGACTCAATATCCCCATAAGCATAGTGAAAGGAAAACAGGTCA-TTTTTTGTTCAGAATCTTATTTTAGAA-AAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240230 83 -  99763055 TGTGT-ATGTTGACTCAATATCCCCATAAGCATAGTGAAAGGAAAACAGGTCA-TTTTTTGTTCAGAATCTTATTTTAGAA-AAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       302912 82 +    378907 TGTGT-ATGTTGACTCAATATCCCCATAAGCATAGGGAAAGGAAAACGGGTCA-TTTTTTGTTCAGAATCTTATTTGAG-A-AAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158434 83 + 121039945 TGTGT-ATGTTGACTCAATATCCCCATAAGCATAGGGAAAGGAAAATGGGTCA-TTTTTTGTTCAGAATCTTATATGAGAA-AAAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361063 83 - 171882078 TGTGT-ATGTTGCCTCAATATTCCCATAAGCACAGG-AAAGGAAAATGGGTCATTTTTTTGTTCAGAATCTTACTTGAGGA-AAAA
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486073 83 -   9444221 TGTGT-ATGTTGAGTCAGTATTCCCATAAGCATGGGAAAAGGAAGGCAGGTTA-TTTTTTGTTCAGAATCCTATTTGAGAG-AAAA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18028262 84 + 132174527 TGTGT-GTGTTTACTCAGTATTCCCATAAACATGGGAAAAGGAAGGCAGGTCA-TTTTTTGTTCAAAATCTTATTTGAGAGAAAAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             524814 83 -   3282555 TGTAT-ATATTTACTCAGTATTCCCATAAACATGGGAAAAGGAAGGCAGGTCA-TTTTTTGTTCAAAATCTTATTTGAGAG-AAAA
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       755547 83 -   3745603 TGTGT-CTGTTTACTCAGTATTCTCATAAACATGGGATAAGGAAGGCAGGTCA-TTTTTTGTTCAAAATCTTATTTGAGAG-AAAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 940006 75 - 119751181 --CGT-ATGTTTACTCAAAATTCCCGTAAATATGGGAAAGGAAA----GGTTA-TTTTTTGTT--AAATCTTATTCAAGAG-AAAA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       662691 75 -   2566024 --CGT-ATGTTTACTCAAAATTCCCGTAAATATGGGAAAGGAAA----GGTTA-TTTTTTGTT--AAATCTTATTCAAAAG-AAAA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6778271 75 -  36342412 --TGTGATGTTTACTCAAAATTCCCATAAACATGTGAGCAGAAA----GGTTA--TTTTTGTT--CAATCTTATTCAAGAG-AAAA
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              63847 73 -   2180720 --TGT-ATGTTTAATTAGTATTCCTGTAAGCATGGGAAAAGGAAAG--------TTTTCTGATTAAAATCTTATTCAAAGA-AAA-
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e canFam3.chr30                 63257  1 -  40214260 I
e cebCap1.NW_016107979v1       308427 2599 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360469 166 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=313472.000000
s hg38.chr15_KI270850v1_alt    204362 50 +    430880 AAAA--GATCAAAGAAAAGATTTGGATAAAAATCTGCAA-ATTCAGGATAAAT
s panTro5.chr15              18014052 50 -  83230942 AAAA--GATCAAAGAAAAGATTTGCATAAAAATCTGCAA-ATTCAGGATAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240313 50 -  99763055 AAAT--GATCAAAGAAAAGATTTGCATAAAAATCTGCAA-ATTCAGGATAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       302994 50 +    378907 AAAT--GATCAAAGAAAAGATTTGGATAAAAATCTGCAA-ATTCAGGATAAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158517 50 + 121039945 AAAA--GATCAAAGAAAAGATTTGGATAAAAATCTGCAA-ATTCAGGATAAGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361146 52 - 171882078 AAAAATGATCAAGGAAAAGATTTGGATAAAAATCTGCAA-ATTCAGGATAAAT
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486156 50 -   9444221 AAAA--GATCAAGGAAAATATTTGGACAAAAATCTGTAA-ATTCAGGATAAAT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18028346 49 + 132174527 AAAT--GATCAAGGAAAAGATTTAGA-AGAAATTTACAA-ATTCAGAATAAAT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             524897 49 -   3282555 AAAT--GATCAAGGAAAAGATTTGGA-AGAAATTTACAA-ATTCAGAATAAAT
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       755630 49 -   3745603 AAAT--GATCAAGGAAAAGATTTGGA-AGAAATTTGCAA-ATTCAGAATAAAT
i aotNan1.NW_018511953v1    C 0 I 337
s micMur3.chr3                 940081 48 - 119751181 AAA---AATCAAGGAAAGGATTTGGA-AAAATTCTGTAA-ATTCAAGATAAAT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       662766 49 -   2566024 AAAT--AATCAAGGAAAGGATTTGGA-AAAAATCTGTAA-ATTCAAGATAAAT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6778346 49 -  36342412 ACAT--AATCAAGGAAAGGATTTGGA-AAAATTTTGTAA-ATTCAAGATAAAT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 63258 50 -  40214260 AAAT--GATTAAGGAAGAGATTTCAAAAAAATTTTGTCA-ATTCAGGATAAAT
i canFam3.chr30             I 1 C 0
s dasNov3.JH569975              63920 45 -   2180720 AAAT--G-----GGAAAAGAATTGGA-AATATTCTTTAATGTTTGatataaat
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e cebCap1.NW_016107979v1       308427 2599 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360469 166 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=40965.000000
s hg38.chr15_KI270850v1_alt    204412 7 +    430880 GTATGAA
s panTro5.chr15              18014102 7 -  83230942 GTATGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240363 7 -  99763055 GTATGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303044 7 +    378907 ATATGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158567 7 + 121039945 GTATGAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361198 7 - 171882078 GTATGAA
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486206 7 -   9444221 GTATGAA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18028395 7 + 132174527 ATATAAA
i calJac3.chr10             C 0 I 329
s saiBol1.JH378276             524946 7 -   3282555 ATATAAA
i saiBol1.JH378276          C 0 I 1104
s micMur3.chr3                 940129 7 - 119751181 GGATAAA
i micMur3.chr3              C 0 I 10
s proCoq1.NW_012149419v1       662815 7 -   2566024 GGATAAA
i proCoq1.NW_012149419v1    C 0 I 10
s otoGar3.GL873530            6778395 7 -  36342412 GGATAAA
i otoGar3.GL873530          C 0 I 10
s canFam3.chr30                 63308 7 -  40214260 GTATAAA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              63965 7 -   2180720 atataaa
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       755679 337 -   3745603 I
e mm10.chr9                  55193894 813 + 124595110 I
e cebCap1.NW_016107979v1       308427 2599 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360469 166 -   6271500 I
e rheMac8.chr7               60364078 0 + 169600520 C

a score=34428.000000
s hg38.chr15_KI270850v1_alt    204419 5 +    430880 AACAT-
s panTro5.chr15              18014109 5 -  83230942 AACAT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240370 5 -  99763055 AACAT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303051 5 +    378907 AACAT-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158574 5 + 121039945 AACAT-
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361205 5 - 171882078 AACAT-
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486213 5 -   9444221 AACAT-
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18028731 5 + 132174527 AACAT-
i calJac3.chr10             I 329 C 0
s saiBol1.JH378276             526057 5 -   3282555 AACAT-
i saiBol1.JH378276          I 1104 C 0
s aotNan1.NW_018511953v1       756016 5 -   3745603 AACAT-
i aotNan1.NW_018511953v1    I 337 C 0
s micMur3.chr3                 940146 5 - 119751181 AGCAT-
i micMur3.chr3              I 10 C 0
s proCoq1.NW_012149419v1       662832 5 -   2566024 AGCAT-
i proCoq1.NW_012149419v1    I 10 C 0
s otoGar3.GL873530            6778412 5 -  36342412 AACAT-
i otoGar3.GL873530          I 10 C 0
s canFam3.chr30                 63315 5 -  40214260 AATAT-
i canFam3.chr30             C 0 I 14
s dasNov3.JH569975              63972 5 -   2180720 -atatt
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e cebCap1.NW_016107979v1       308427 2599 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360469 166 -   6271500 I
e rheMac8.chr7               60364078 0 + 169600520 C

a score=23562.000000
s hg38.chr15_KI270850v1_alt    204424 3 +    430880 TTT
s panTro5.chr15              18014114 3 -  83230942 TTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240375 3 -  99763055 TTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303056 3 +    378907 TTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158579 3 + 121039945 TTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361210 3 - 171882078 TTG
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486218 3 -   9444221 TTA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18028736 3 + 132174527 TTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526062 3 -   3282555 TTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       311026 3 -   1024465 TTT
i cebCap1.NW_016107979v1    I 2599 C 0
s aotNan1.NW_018511953v1       756021 3 -   3745603 TTT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 940151 3 - 119751181 TTT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       662837 3 -   2566024 TTT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6778417 3 -  36342412 TAT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 63334 3 -  40214260 TTT
i canFam3.chr30             I 14 C 0
s dasNov3.JH569975              63977 3 -   2180720 ttt
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360469 166 -   6271500 I
e rheMac8.chr7               60364078 0 + 169600520 C

a score=46247.000000
s hg38.chr15_KI270850v1_alt    204427 5 +    430880 AAAAT
s panTro5.chr15              18014117 5 -  83230942 AAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240378 5 -  99763055 AAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303059 5 +    378907 AAAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158582 5 + 121039945 AAAAT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361213 5 - 171882078 AAAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5360635 5 -   6271500 AAAAT
i macNem1.NW_012011056v1    I 166 C 0
s colAng1.NW_012112253v1      7486221 5 -   9444221 AAAAT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18028739 5 + 132174527 AAAAT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526065 5 -   3282555 TAAAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       311029 5 -   1024465 AAAAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       756024 5 -   3745603 AAAAT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 940154 5 - 119751181 GAAAT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       662840 5 -   2566024 GAAAT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6778420 5 -  36342412 GAAAC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 63337 5 -  40214260 GAAAT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              63980 5 -   2180720 CAGAT
i dasNov3.JH569975          C 0 I 60
e mm10.chr9                  55193894 813 + 124595110 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e rheMac8.chr7               60364078 0 + 169600520 C

a score=374213.000000
s hg38.chr15_KI270850v1_alt    204432 48 +    430880 GTGATTATGAAATAGACCA--GTATAGCTTTTCAACATTTTGTTGTAAGA
s panTro5.chr15              18014122 48 -  83230942 GTGATTATAAAATAGACCA--GTATAGCTTTTCAACATTTGGTTGTAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240383 48 -  99763055 GTGATTATAAAATAGACCA--GTATAGCTTTTCAACATTTGGTTGTAAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303064 48 +    378907 GTGATTATGAAATAGACCA--GTATAGCTTTTCAACATTTTGTTGTAAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158587 48 + 121039945 GTGATTATAAAATAGACCC--ATATAGCTTTTCAACATTTTGTTGTAAGA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361218 48 - 171882078 GTGATTATACAATGGACCA--GTATAGCTTTTCAACATTTTGTTGTAAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5360640 50 -   6271500 GTGATTGTAAAATGGACCAGGGTATAGCTTTTCAACATTTTCTTGTAAGA
i macNem1.NW_012011056v1    C 0 I 90
s colAng1.NW_012112253v1      7486226 48 -   9444221 GTGATTATAAAATGGGCCA--GCATAGCTTTTCTACTTTTTGTGGTAAGA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18028744 47 + 132174527 GTGA-TATAGAATTGACCA--GTATAGCTTTTCAACATTTTATTGTAAGA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526070 48 -   3282555 GTGATTATAAAATTGACCA--GTGTAGCTTTTCAATATTTTATTGCAAGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       311034 48 -   1024465 GTGACTATAAAATTGACCA--GTATAGCTTTTCAACATTTTATTGTACGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       756029 48 -   3745603 GTGATTATAAAATTGACCA--GTATAGCTTTTTAACATTTTATTGTAAGA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 940159 48 - 119751181 CTGATTATAAAATTGACTA--GCATAGGTTTTTCACATTTTGTTGTGAGA
i micMur3.chr3              C 0 I 1
s proCoq1.NW_012149419v1       662845 48 -   2566024 CTGATTATAAAATTGACTA--GCATAGGTTTTTCACATTTTGTTGTGAGA
i proCoq1.NW_012149419v1    C 0 I 1
s otoGar3.GL873530            6778425 48 -  36342412 TTGATTATAAAATTGACTA--GCATAGGTTTTCTACACTTTGTTGTGAGA
i otoGar3.GL873530          C 0 I 1
s canFam3.chr30                 63342 47 -  40214260 CTGATC-TAACCTTGAATA--GCATAGATTTTTCATATTTTGTCATGAGA
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              63985 60 -   2180720 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=478266.000000
s hg38.chr15_KI270850v1_alt    204480 76 +    430880 -ATCCCAAGAATGT-AAG--TTTATGATCT----TAGTATAC---CACCTAG-AATCGAGACAAATACATGAAGTTATGAATCATGCC
s panTro5.chr15              18014170 76 -  83230942 -ATCCCAAGAATGT-AAG--TTTATGATCC----TGGTATAC---CACCTAG-AATCGAGACAAATACATGAGGTTATGAATCATGCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240431 76 -  99763055 -ATCCCAAGAATGT-AAG--TTTATGATCT----TGGTATAC---CACCTAG-AATCGAGACAAATACATGAGGTTATGAATCATGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303112 76 +    378907 -ATCCCAAGAATGT-AAG--TTTATGATGT----TAGTATAC---CACCTAG-AATCGAGACAAATACATGAAGTTATGAATCATGCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158635 76 + 121039945 -ATCCCAAGAATGT-AAG--TTTATGATCT----CAGTATAC---CACCTAG-AATCCAGACAAATACATGAAGTTATGAATCGTGCC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361266 76 - 171882078 -ATGCCAAGAATGT-AAG--TGTATGATCT----TCGTATAC---CACCTAG-AATCGAGACAAATACATGAAGTTATGAGTCATGCC
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486274 76 -   9444221 -ATCCCAAGAATGT-AAG--TTCGTGATCT----TAGTATAC---CATCTAG-AAGCGAGACAAATACATGAAGTTATGAATCATGCC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18028791 74 + 132174527 -ATTCCAAGAATTT---G--TTTATGACCT----TAGTTTAC---CACCTAG-AACAGAGACAAATACATGAAGTTATGAATAATGCC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526118 76 -   3282555 -ATTCCAAGAATTT-AAG--TTTATGACCT----TAGTTTAC---CACCTAG-AACAGAGACAAATACATGAACTTATGAATAATGCC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       311082 76 -   1024465 -ATTCCAAGAATTT-AAG--TTTATGACCT----TAGTTTAC---CACCTAG-AACAGAGACAAATACGTGAAGTTATGAATAATGCC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       756077 76 -   3745603 -ATTCCAAGAATTT-AAG--TTTATGACCT----TAGTTTAC---CACCTAG-AACAGAGACAAATACATGAAGTTATGAATAATGCC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 940208 85 - 119751181 -ATCCCAGGAATTTTAAG--TTTGTGATCTTAAATAGTTTACTATTTCCCAGTAGTAGAGACAAATACATGAACTTAGGAATAATTCC
i micMur3.chr3              I 1 C 0
s proCoq1.NW_012149419v1       662894 82 -   2566024 -ATCCCAGGAATTTTAAG--TTTGTGATTTTAAGTAGTTTAC---TTCCCAGTAGTAGAGACAAATACATGAACTTACAAATAATTCC
i proCoq1.NW_012149419v1    I 1 C 0
s otoGar3.GL873530            6778474 82 -  36342412 -ATCTCAGGAATTTTAAG--TTTGTGATCTTAAGTAGTGTAT---CTCCTAATAATAGAGACACATAGATGAACTTATGAATAATTCC
i otoGar3.GL873530          I 1 C 0
s canFam3.chr30                 63389 80 -  40214260 AATCCTAAGAAATTTAAGTATTTCTGATCTT---TAGTTTAC---CATCTAGTTGTGGAGACAAAGACATGAAGTT--GAATAATACC
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              63985 60 -   2180720 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360690 90 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=381818.000000
s hg38.chr15_KI270850v1_alt    204556  66 +    430880 ATTTTCAGTTTTAAAATCTGTTACATAGTT--TCTTCATTGAT-TCTTTTTTGCCACAGTG----TGT-----------------------------------------TATGG
s panTro5.chr15              18014246  66 -  83230942 ATTTTCAGTTTTAAAATCTGTTACATAGTT--TCTTCATTGAT-TCTTTTTTGCCACAGTG----TGT-----------------------------------------TATGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240507  66 -  99763055 ATTTTCAGTTTTAAAATCTGTTACATAGTT--TCTTCATTGAT-TCTTTTTTGCCACAGTG----TGT-----------------------------------------TATGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303188  66 +    378907 ATTTTCAGTTTTAAAATCTGTTACATAGTT--TCTTCATTGAT-TCTTTTTTGCCACAGTG----TGT-----------------------------------------TATGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158711  66 + 121039945 ATTTTCAGTTTTAAAATCTGTTACTTAGTT--TCTTCATTGAT-TCTTTTTTGCCACAGTG----TGT-----------------------------------------TATGG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361342  66 - 171882078 ATTTTCAGTTTTAAAATCTCTCACATAGTT--TCTTCAGTGAT-TCTTTTTTGCAACAGTG----TGT-----------------------------------------TATGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5360780  67 -   6271500 ATTTTCAGTTTTAAAATCGTTCACATGTTG--TCTTCATTGAT-TCTTTTTTGCCACAGTG---CTGT-----------------------------------------TATGG
i macNem1.NW_012011056v1    I 90 C 0
s colAng1.NW_012112253v1      7486350  66 -   9444221 ATTTTTAGTTTTAAAATCTGTTCCATGGTT--TCTTCATTGAT-TCTTTTTTGCCACAGTG----TGT-----------------------------------------TATGG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18028865  54 + 132174527 ATTTTCAGTTTTAAAATCTGTTACATAG------TT---TGAT-TCTTTTATGCCACAG------TGT-----------------------------------------TA---
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526194  58 -   3282555 GTTTTCAGTTCTAAAATCTGTTACATAGTT--TCTT---TGAT-TCTTTTATGCCACAG------TAT-----------------------------------------TA---
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       311158  58 -   1024465 ATTTTCAGTTTTAAAATGTGTTACATAGTT--TCTT---TGAT-TCTTTTATGCCGCAG------TAT-----------------------------------------TA---
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       756153  59 -   3745603 ATTTTCAGTTTTAAAATCTGTTACATAGTT--TCTT---TGAT-TCTTTTATGCCAGTGT-----TGT-----------------------------------------TA---
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 940293  69 - 119751181 ATTTTCAGTTTTAAAATCTGTTAAATAGCGTCTCTTCATTGAT-TGTTTTTTGCCATAATGGGGTTAT-----------------------------------------TA---
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       662976  68 -   2566024 ATTTTCAGTTTTAAAATCTGTTACATAGTTTCTCTTCATTGAT-TG-TTTTTGCCACAGTggggttat-----------------------------------------ta---
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6778556 110 -  36342412 ATTTTCAGTTTTAAAATCTTCTACATAGTTTCTCTTCATTGAT-TCTTTTTTAAAACAATAGAGttttgtttttttttttgagacagagcctcaagccgtccccctgggta---
i otoGar3.GL873530          C 0 I 130
s canFam3.chr30                 63469  67 -  40214260 AATTTCAGTTTAAAAATCTGTTACATAGTTTCTCTTCATTGCTGTCTTTTTCTTTTGGGTGT---TAT-----------------------------------------TA---
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              63985  60 -   2180720 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e rheMac8.chr7               60364078   0 + 169600520 C

a score=61946.000000
s hg38.chr15_KI270850v1_alt    204622 9 +    430880 TCCTCATTA
s panTro5.chr15              18014312 9 -  83230942 TCCTCATTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240573 9 -  99763055 TCCTCATTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303254 9 +    378907 TCCTCATTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158777 9 + 121039945 TCCTCATTA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361408 9 - 171882078 TCCTCATTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5360847 9 -   6271500 TTCTCATTA
i macNem1.NW_012011056v1    C 0 I 485
s colAng1.NW_012112253v1      7486416 9 -   9444221 TCCTTATTA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18028919 6 + 132174527 ---TCATTA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526252 6 -   3282555 ---TCATTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       311216 6 -   1024465 ---TCATTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       756212 6 -   3745603 ---TCATTA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 940362 9 - 119751181 TCCTCATTA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       663044 9 -   2566024 tccctatta
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6778796 9 -  36342412 tcattgttg
i otoGar3.GL873530          I 130 C 0
s canFam3.chr30                 63536 9 -  40214260 ATCCCATTA
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              63985 60 -   2180720 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e rheMac8.chr7               60364078 0 + 169600520 C

a score=24913.000000
s hg38.chr15_KI270850v1_alt    204631 5 +    430880 TTTGG
s panTro5.chr15              18014321 5 -  83230942 TTTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240582 5 -  99763055 TTTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303263 5 +    378907 TTTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158786 5 + 121039945 TTTGG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361417 5 - 171882078 TTTGG
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486425 5 -   9444221 TTTGA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18028925 5 + 132174527 TTCAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526258 5 -   3282555 TTCAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       311222 5 -   1024465 TTCAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       756218 5 -   3745603 TTCAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 940371 5 - 119751181 TTCAA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       663053 5 -   2566024 ttcaa
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6778805 5 -  36342412 tttgg
i otoGar3.GL873530          C 0 I 113
s canFam3.chr30                 63545 5 -  40214260 TACAA
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              63985 60 -   2180720 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I
e rheMac8.chr7               60364078 0 + 169600520 C

a score=272208.000000
s hg38.chr15_KI270850v1_alt    204636 32 +    430880 ATGAATAATTTGAATAATAAGTCAGCTTGTGA
s panTro5.chr15              18014326 32 -  83230942 ATGAATAATTTGAATAATAAGTCAGCTTGTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240587 32 -  99763055 ATGAATAATTTGAATAATAAGTCAGCTTGTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303268 32 +    378907 ATGAATAATTTGAATAATAAGTCAGCTTGTGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158791 32 + 121039945 ATGAATAATTTGAATAATAAGTCAGCTTGTGA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361422 32 - 171882078 ATAAATAATTTGAATAATAAGTCAGCTTGTGA
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486430 32 -   9444221 ATGAATAATTTGAATAATAAGTCAGCTTGTGA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18028930 32 + 132174527 ATGAATAATTTGAATAATAAATCAGCTTGTAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526263 32 -   3282555 ATGAATAATTTGAATAATAAATCAGCTTGTAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       311227 32 -   1024465 ATGAATAATTTGAATAATAAATCAGATTGTAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       756223 32 -   3745603 ATGAATAATTTGAATAATAAATCAGCTTGTAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 940376 32 - 119751181 ATGAAAAATCTGAGTAATAAGTCAGCTTGCGA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       663058 32 -   2566024 atgaaaaatctgagtaataagtcagcttgtga
i proCoq1.NW_012149419v1    C 0 I 28
s otoGar3.GL873530            6778923 32 -  36342412 ATGAAAAGTTTGAGTAATAAGTCAGCTTGTGA
i otoGar3.GL873530          I 113 C 0
s canFam3.chr30                 63550 32 -  40214260 ATGAATGATTTGAATAGTAAGTCAGCTTGTCA
i canFam3.chr30             C 0 I 1
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              63985 60 -   2180720 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=161204.000000
s hg38.chr15_KI270850v1_alt    204668 34 +    430880 CTTAGCCAAATAAATCTTCTGATTCCTAGTAAAG
s panTro5.chr15              18014358 34 -  83230942 CTTACCTAAATAAATCTTCTGATTCCTAGTAAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240619 34 -  99763055 CTTACCTAAATAAATCTTCTGATTCCTAGTAAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303300 34 +    378907 CTTAGCCAAATAAATCTTCTGATTCCTAGTAAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158823 34 + 121039945 CTTACCCAAATAAATCTTGTGATTCCTAGTAAAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361454 32 - 171882078 CCTACCCAAATAAATCT--TGATTCCTAATAAAG
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486462 34 -   9444221 CCTACCCAAATAAATCTTCTGATTCCTAGTAAAG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18028962 30 + 132174527 CCTACCC----AAATCTTCTGATCCCTAATAAAG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526295 30 -   3282555 CCTACCC----AAATCTTCTGATCCCTAATAAAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       311259 30 -   1024465 CCTACCC----AAATCTTCTGATCCCTAATAAAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       756255 30 -   3745603 CCTACCC----AAATCTTCTGATCCCTAATAAAG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 940408 31 - 119751181 TTAGTCCAAAT-AATCTTCTGATCCCTGAAAG--
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6778955 34 -  36342412 TTTATCCAAATAAATCTTTTGACTCCCAATAAAG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 63583 27 -  40214260 CTTACCCAAATAAACCTT-------CTAGTAAAA
i canFam3.chr30             I 1 C 0
e proCoq1.NW_012149419v1       663090 28 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              63985 60 -   2180720 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=223870.000000
s hg38.chr15_KI270850v1_alt    204702 27 +    430880 TG-TTTTTCATTATACGAAATGCCAGCT
s panTro5.chr15              18014392 27 -  83230942 TG-TTTTTCATTATATGAAATGCCAGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240653 27 -  99763055 TG-TTTTTCATTATATGAAATGCCAGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303334 27 +    378907 TG-TTTTTCATTATACGAAATGCCAGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158857 27 + 121039945 TG-TTTTTCATTATACGAAATGCCAGCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361486 27 - 171882078 TG-TTTTTCATTATACCAAATGCCAGCT
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486496 27 -   9444221 TG-TTTTTCATTATACCAAATGCCAGCT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18028992 27 + 132174527 TG-TTTTTCATTATATCAAATGCCAACT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526325 27 -   3282555 TG-TTTTTCATTATACCAAATGCCAACT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       311289 27 -   1024465 TG-TTTTTCATTATACCAAATGCCAGCT
i cebCap1.NW_016107979v1    C 0 I 6
s aotNan1.NW_018511953v1       756285 27 -   3745603 TG-TTTTTCATTATACCAAATGCCAACT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 940439 27 - 119751181 TG-TTTTCCATTATACCAAATGCCAGCT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       663118 27 -   2566024 TG-TTTTCCATTATACCAAATGCCAGCT
i proCoq1.NW_012149419v1    I 28 C 0
s otoGar3.GL873530            6778989 27 -  36342412 TG-TTTTCCATTATAGCAAATGCCAGCT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 63610 28 -  40214260 TGTTTTTTCATTACACCAAAAGCCAACA
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              63985 60 -   2180720 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=44983.000000
s hg38.chr15_KI270850v1_alt    204729 8 +    430880 ATGTAAGA
s panTro5.chr15              18014419 8 -  83230942 ATATAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240680 8 -  99763055 ATATAAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303361 8 +    378907 ATGTAAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158884 8 + 121039945 ATATAAGA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361513 8 - 171882078 ATATAAGA
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486523 8 -   9444221 ATATAAGA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18029019 8 + 132174527 ATATAAGG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526352 8 -   3282555 ATATAAGA
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       756312 8 -   3745603 ATATAAGA
i aotNan1.NW_018511953v1    C 0 I 99
s micMur3.chr3                 940466 8 - 119751181 GTATAAAA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       663145 8 -   2566024 ATATAAAA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6779016 8 -  36342412 TTATGAAA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 63638 7 -  40214260 -ACTAAAA
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              63985 60 -   2180720 I
e cebCap1.NW_016107979v1       311316 6 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I
e rheMac8.chr7               60364078 0 + 169600520 C

a score=34679.000000
s hg38.chr15_KI270850v1_alt    204737 9 +    430880 GGAGATTAA
s panTro5.chr15              18014427 9 -  83230942 GGAGATTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240688 9 -  99763055 GGAGATTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303369 9 +    378907 GGAGATTAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158892 9 + 121039945 GGAGATTAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361521 9 - 171882078 GGAGATTAA
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486531 9 -   9444221 GGAGATTAA
i colAng1.NW_012112253v1    C 0 C 0
s micMur3.chr3                 940474 9 - 119751181 GGGGATTAA
i micMur3.chr3              C 0 I 420
s proCoq1.NW_012149419v1       663153 9 -   2566024 GGGGGTTAA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6779024 7 -  36342412 AGGGATT--
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 63645 9 -  40214260 GGAGATTAA
i canFam3.chr30             C 0 C 0
e aotNan1.NW_018511953v1       756320 99 -   3745603 I
e mm10.chr9                  55193894 813 + 124595110 I
e calJac3.chr10              18029027 0 + 132174527 C
e dasNov3.JH569975              63985 60 -   2180720 I
e cebCap1.NW_016107979v1       311316 6 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I
e rheMac8.chr7               60364078 0 + 169600520 C
e saiBol1.JH378276             526360 0 -   3282555 C

a score=12970.000000
s hg38.chr15_KI270850v1_alt    204746 12 +    430880 AAGTA--------------CTAAGAA------------------
s panTro5.chr15              18014436 12 -  83230942 AAGTA--------------CTACGAA------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240697 12 -  99763055 AAGTA--------------CTACGAA------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303378 12 +    378907 AAGTA--------------CTAAGAA------------------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158901 12 + 121039945 AAGTA--------------CTAAGAA------------------
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361530 12 - 171882078 AAGTA--------------CTAAGAA------------------
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486540 12 -   9444221 AAGTA--------------CTAAGTA------------------
i colAng1.NW_012112253v1    C 0 C 0
s proCoq1.NW_012149419v1       663162 12 -   2566024 AAGCA--------------CTCAGAa------------------
i proCoq1.NW_012149419v1    C 0 I 764
s otoGar3.GL873530            6779031  6 -  36342412 --------------------TAAAAA------------------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 63654 44 -  40214260 AAGTAAGAAAATTAAAAGTCAAAAAAATAAAAGGAGATTAAAAG
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 940483 420 - 119751181 I
e aotNan1.NW_018511953v1       756320 99 -   3745603 I
e mm10.chr9                  55193894 813 + 124595110 I
e calJac3.chr10              18029027  0 + 132174527 C
e dasNov3.JH569975              63985 60 -   2180720 I
e cebCap1.NW_016107979v1       311316  6 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C
e saiBol1.JH378276             526360  0 -   3282555 C

a score=54496.000000
s hg38.chr15_KI270850v1_alt    204758 23 +    430880 CTGTAAGTACTGCATTGATTATC
s panTro5.chr15              18014448 15 -  83230942 CTGTAAGTTCCGCAT--------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240709 23 -  99763055 CTGTAAGTTCCGCGTTGATTATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303390 23 +    378907 CTGTAAGTACTGCATTGATTATC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158913 23 + 121039945 CTGTAAGTACCGCATTGATTGTC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361542 23 - 171882078 CTCTAAGTACCCTATTGATTATC
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486552 23 -   9444221 CTCTAAGTACTCCATTGATTATC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18029027 21 + 132174527 --TTAAGTACTTTGTTGATTGTC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526360 21 -   3282555 --TTAAATACTTCATTGATTGTC
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6779037 23 -  36342412 TATTAAGTATTCTTTTGAATGGC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 63698 23 -  40214260 CATTAAGTACTTCATTGATTTGC
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 940483 420 - 119751181 I
e proCoq1.NW_012149419v1       663174 764 -   2566024 I
e aotNan1.NW_018511953v1       756320 99 -   3745603 I
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              63985 60 -   2180720 I
e cebCap1.NW_016107979v1       311316  6 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C

a score=27496.000000
s hg38.chr15_KI270850v1_alt    204781 15 +    430880 ATATGCTAACCATGg
s panTro5.chr15              18014463  9 -  83230942 ------TAACCATGg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240732 15 -  99763055 ATATGCTAACCATGg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303413 15 +    378907 ATATGCTAACCATGg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158936 15 + 121039945 ATATGCTAACCGTGg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361565 15 - 171882078 ATATGCTACCCATAg
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486575 15 -   9444221 AAATGCTAACCATGg
i colAng1.NW_012112253v1    C 0 C 0
s otoGar3.GL873530            6779060 15 -  36342412 AAATGTTACTTATGA
i otoGar3.GL873530          C 0 I 269
s canFam3.chr30                 63721 15 -  40214260 AAATGTGAAGTGTGG
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 940483 420 - 119751181 I
e proCoq1.NW_012149419v1       663174 764 -   2566024 I
e aotNan1.NW_018511953v1       756320 99 -   3745603 I
e mm10.chr9                  55193894 813 + 124595110 I
e calJac3.chr10              18029048  0 + 132174527 C
e dasNov3.JH569975              63985 60 -   2180720 I
e cebCap1.NW_016107979v1       311316  6 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C
e saiBol1.JH378276             526381  0 -   3282555 C

a score=35519.000000
s hg38.chr15_KI270850v1_alt    204796 24 +    430880 gccaggcacggtggcacacaccta
s panTro5.chr15              18014472 24 -  83230942 gccaggcacggtggcacacaccta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240747 24 -  99763055 gccaggcacggtggcacacaccta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303428 24 +    378907 gccaggcacggtggcacacaccta
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158951 24 + 121039945 gccaggcacagtggcacacaccta
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107361580 24 - 171882078 gtcaggcatggtggcacacacctg
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486590 24 -   9444221 gccaggcacggtggttcatgcctg
i colAng1.NW_012112253v1    C 0 C 0
s canFam3.chr30                 63736  3 -  40214260 -------------------ACT--
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 940483 420 - 119751181 I
e proCoq1.NW_012149419v1       663174 764 -   2566024 I
e aotNan1.NW_018511953v1       756320 99 -   3745603 I
e mm10.chr9                  55193894 813 + 124595110 I
e calJac3.chr10              18029048  0 + 132174527 C
e dasNov3.JH569975              63985 60 -   2180720 I
e cebCap1.NW_016107979v1       311316  6 -   1024465 I
e otoGar3.GL873530            6779075 269 -  36342412 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I
e rheMac8.chr7               60364078  0 + 169600520 C
e saiBol1.JH378276             526381  0 -   3282555 C

a score=554854.000000
s hg38.chr15_KI270850v1_alt    204820 275 +    430880 taatcccagcactttgggaggctgaggcgggtggatcacttgaggtcaggagttcaagaccagcctggccaagatggtgaaacccctgtctctaccaaaaatacaaaaaatttgccagatgtggtggtgcatactggtaatcccagctactcaggaggctgagtcaggagaatcgcttgaactcgggaggcagaggttgcagtgagctgagatcgtgccactgcgctccagcctgggtgacaaagataaactccatct-gaacaaaaaagaaaaag
s panTro5.chr15              18014496 272 -  83230942 taatcccagcactttgggaagctgaggcgggtggatcacttgaggtcaggagttcaagaccagcctggccaagatggtgaaacccc-atctctaccaaaaatccaaaaa--ttgccagatgtggtggtgcatactggtaatcccagctactcaggaggctgagtcaggagaatcgcttgaactcgggaggtggagattgcagtgagctgagatcgtgccactgcgctccagcctgggtgacaaagataaactgcatct-gaacaaaaaagaaaaag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17240771 272 -  99763055 taatcccagcactttgggaagctgaggcgggtggatcacttgaggtcaggagttcaagaccagcctggccaagatggtgaaacccc-atctctaccaaaaatccaaaaa--ttgccagatgtggtggtgcatactggtaatcccagctactcaggaggctgagtcaggagaatcgcttgaactcgggaggtggagattgcagtgagctgagatcgtgccactgcgctccagcctgggtgacaaagataaactgcatct-gaacaaaaaagaaaaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303452 275 +    378907 taatcccagcactttgggaggctgaggcgggtggatcacttgaggtcaggagttcaagaccatcctggccaagatggtgaaacccccgtctctaccaaaaatacaaaaaatttgccagatgtggtggtgcatactggtaatcccagctactcaggaggctgagtcaggagaatcgcttgaactcgggaggcagaggttgcagtgagctgagatcgtgccactgcgctccagcctgggtgacaaagataaactccatct-gaacaaaaaagaaaaag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102158975 271 + 121039945 taaccccagcactttgggaggccgaggcgggtggatcacttgaggtcaggagttcgagaccagcctggccaagatggtgaaacccc-atctctaccaaaaatacaaaaaatttgccagat---gtggtgcatactggtaatcccagctactcaggaggctgaggcaggagaatcgcttgaactcgggaggcagaggttgcagtgagttgagatcgtgccactgcgccccagcctgggtgacaaagataaactccatct-gaacaaaaaagaaaaag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60364078 274 + 169600520 taatcctaacactttgggaggccgaggcgggcagatcacttgaggtcaggaatttgagatcaacctggccaagatggcaaaacccc-atctctacc-aaaatacaaaaacttaggcagatgtagtggcatgtaccagtaatcccagcttcttgggaggctgaggcaggagaatctcttgaactcaggaggtagaggttgcagtgagccgagatcacgccactgtgctccagcctgggtgacaaagataaactccatctaaaaaaaaaaagaaaaag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107361604 274 - 171882078 taatctcagcactttgggaggccgagggggatggatcacttgaggtcaggagttccagaccaggcttaccaagatggtgaaacctc-atctctaccaaaaatacaaaaaaattgccagatatggtggtgcgtactggtagtctcagctactcaggaggctgaggcaggagaatcgcttgaactcggggggcagaggttgcagtaagctgagattgcaccactgcactccagccttggtggcaaagataaactccatct-gaacaaaaaagaaaaag
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486614 273 -   9444221 taatcccagcactttgggaggcagaggtgggcagatcacttgaggtcaagagttcaagaccaccctggccaagatggcaaaacccc-atctccaccaaaaatacaaaaatttagccagatgtggtggtgcgtacctgtaatcccagctacttgggagtctgggacaggagaattacttgaactcaggaggcagaggttgcagcgagtcgagattgtgccactgcactccagcctgggtgacaaagataaactccatct--aaaaagaaagaaaaag
i colAng1.NW_012112253v1    C 0 C 0
s canFam3.chr30                 63739  73 -  40214260 -------------------------------TGAGTTCTTTGAGGTTA-------AAGA-----------AAAAGGGAGTTGCCTC------------------------------------------------------------------------------CAG------------------------------TATAGCGATCTGGGA-----------------AGACTGTGTCCCGCAGGT-----------------------------
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 940483 420 - 119751181 I
e proCoq1.NW_012149419v1       663174 764 -   2566024 I
e aotNan1.NW_018511953v1       756320  99 -   3745603 I
e mm10.chr9                  55193894 813 + 124595110 I
e calJac3.chr10              18029048   0 + 132174527 C
e dasNov3.JH569975              63985  60 -   2180720 I
e cebCap1.NW_016107979v1       311316   6 -   1024465 I
e otoGar3.GL873530            6779075 269 -  36342412 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I
e saiBol1.JH378276             526381   0 -   3282555 C

a score=12956.000000
s hg38.chr15_KI270850v1_alt    205095 4 +    430880 aaaa
s panTro5.chr15              18014768 4 -  83230942 aaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17241043 4 -  99763055 aaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303727 4 +    378907 aaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102159246 4 + 121039945 aaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60364352 4 + 169600520 aaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107361878 4 - 171882078 aaaa
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486887 4 -   9444221 aaaa
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18029048 4 + 132174527 AAAT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526381 4 -   3282555 AAAT
i saiBol1.JH378276          C 0 C 0
e micMur3.chr3                 940483 420 - 119751181 I
e proCoq1.NW_012149419v1       663174 764 -   2566024 I
e aotNan1.NW_018511953v1       756320 99 -   3745603 I
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              63985 60 -   2180720 I
e canFam3.chr30                 63812 0 -  40214260 C
e cebCap1.NW_016107979v1       311316 6 -   1024465 I
e otoGar3.GL873530            6779075 269 -  36342412 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=82678.000000
s hg38.chr15_KI270850v1_alt    205099 18 +    430880 GCTAAGCATGGACTTAAT
s panTro5.chr15              18014772 18 -  83230942 GCTAAGCATGGACTTAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17241047 18 -  99763055 GCTAAGCATGGACTTAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303731 18 +    378907 GCTAAGCATGGACTTAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102159250 18 + 121039945 GCTAAGCATGGACTTAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60364356 18 + 169600520 GCTAAGTATGGACTTAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107361882 18 - 171882078 GCTAAGCATGGACTTAAT
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486891 18 -   9444221 GCTAAGCATGGACTTAAT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18029052 18 + 132174527 GCTAAGCATGGACTTAAT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526385 18 -   3282555 ACTAAGCATGGACTTAAT
i saiBol1.JH378276          C 0 C 0
s dasNov3.JH569975              64045 18 -   2180720 GTCAAATACGGACTTAAA
i dasNov3.JH569975          I 60 C 0
e micMur3.chr3                 940483 420 - 119751181 I
e proCoq1.NW_012149419v1       663174 764 -   2566024 I
e aotNan1.NW_018511953v1       756320 99 -   3745603 I
e mm10.chr9                  55193894 813 + 124595110 I
e canFam3.chr30                 63812  0 -  40214260 C
e cebCap1.NW_016107979v1       311316  6 -   1024465 I
e otoGar3.GL873530            6779075 269 -  36342412 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=124494.000000
s hg38.chr15_KI270850v1_alt    205117 32 +    430880 TTCTCTGAGATTTAAAG-----CTGCAAAGAGTTGCT
s panTro5.chr15              18014790 32 -  83230942 TTCTCTGAGGTTTAAAG-----CTGCAAAGAGTTGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17241065 32 -  99763055 TTCTCTGAGGTTTAAAG-----CTGCAAAGAGTTGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303749 32 +    378907 TTCTCTGAGATTTAAAG-----CTGCAAAGAGTTGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102159268 32 + 121039945 TTCTCTGAGGTTTAAAG-----CTGCAAAGAGTTGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60364374 31 + 169600520 TTCTCTGAGGTTTAAAG-----CTGCAAAG-GTTGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107361900 32 - 171882078 TTCTCTGAGGTTTAAAG-----CTGCAAAGAGTTGCT
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486909 32 -   9444221 TTGTCTGAGGTTTAAAG-----CTGCAAAGAGTTGCT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18029070 30 + 132174527 TTATC--AGGTTTAAAG-----CAGCAAAGAGTTGCT
i calJac3.chr10             C 0 I 21
s saiBol1.JH378276             526403 32 -   3282555 TTATCAGAGGTTTAAAG-----CAGCAAAGAGTTGCT
i saiBol1.JH378276          C 0 I 21
s otoGar3.GL873530            6779344 37 -  36342412 TTTTCTGAAGTTTAAAGGAACTCTGACAGTAGTggcc
i otoGar3.GL873530          I 269 I 8
s canFam3.chr30                 63812 14 -  40214260 ------GGGATCTGGGG-----GTG------------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              64063 31 -   2180720 TACTCTGAG-CTTAAAG-----GAGAAAGGAGTTGTT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 940483 420 - 119751181 I
e proCoq1.NW_012149419v1       663174 764 -   2566024 I
e aotNan1.NW_018511953v1       756320 99 -   3745603 I
e mm10.chr9                  55193894 813 + 124595110 I
e cebCap1.NW_016107979v1       311316  6 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=454407.000000
s hg38.chr15_KI270850v1_alt    205149 78 +    430880 -----------------------CTTCA-TGAAGTAGATGGGATCTCAGCTGGGCAGTGAAATGTGAGTGGGGTTTGGTCAGCTGGTGGAGGTTGCAGGAAA
s panTro5.chr15              18014822 78 -  83230942 -----------------------cttca-tgaagtaggtgggatctcagctgggcagtgaaatgtgagtgggatttggtcagctggtggaggctgcaggaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17241097 78 -  99763055 -----------------------cttca-tgaagtaggtgagatctcagctgggcagtgaaatgtgagtggggtttggtcagctggtggaggctgcaggaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303781 78 +    378907 -----------------------cttca-tgaagtagatgggatctcagctgggcagtgaaatgtgagtggggtttggtcagctggtggaggttgcaggaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102159300 78 + 121039945 -----------------------CTTCA-TGAAGTAGATGGGATCTCAGCTGGGCAGTTAAATGTGAGTGGGGTTTGGTCAGCTGGTGGAGGTTGCAGGAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60364405 78 + 169600520 -----------------------cttca-tgaagtaggtgggatctcaggtgggcagtgaaatgtgagtggggtttggtcagctggtggaggttgaaggaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107361932 78 - 171882078 -----------------------CTTCA-TGAAGTAGGTGGGATCTCAGTTGGGCAGTGAAATGTGAGTGGGGTTTGGTCAGTTGGTGGAGGTTGCAGGAAG
i macFas5.chr7              C 0 C 0
s colAng1.NW_012112253v1      7486941 78 -   9444221 -----------------------cttca-tgaagtaggtgggatgccagctgggcagtgaaatgtgaatgggatttggtcagctggtggaggttgaaggaaa
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18029121 78 + 132174527 -----------------------CTTCA-TGAAGTAAGTGAGATCTCAGCTGGGCAGTGAAATGTGAGTGGGGTTTGGTCATCTGGTGGAGGTTGAAGGAAA
i calJac3.chr10             I 21 C 0
s saiBol1.JH378276             526456 78 -   3282555 -----------------------cttca-tgaagtaggtgggatctcagctgggcagtgaaatgtgagtggggtttggtcagttggtggaggttgaaggaaa
i saiBol1.JH378276          I 21 C 0
s aotNan1.NW_018511953v1       756419 78 -   3745603 -----------------------cttca-tgaagtaagtgggatctcagctgggcagtgaaatgggagtggggtttggtcagctggtggaggttgaaggaaa
i aotNan1.NW_018511953v1    I 99 C 0
s otoGar3.GL873530            6779389 79 -  36342412 -----------------------ttacagtgaagtcagtgagatttcaggtagtccttgaaatatgaatggggtttggtcagccggtggaggttgaaggaaa
i otoGar3.GL873530          I 8 C 0
s canFam3.chr30                 63826 58 -  40214260 ---------------------------------------GGGGTGAGGGGTGGGCATTGAAGTAAGAGTGAGTTTCG-----CTGGTGGAGGTTGAAGGAAA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              64094 95 -   2180720 TTTAGCAGTTGTGATCTGGAAGATTTCA-TGAGGTGGATGGGATTGCAGCTGGCCCTTGAAA-ACGTGTGGAATACAGTCAGGTGGTGGGAATTTAA-----
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 940483 420 - 119751181 I
e proCoq1.NW_012149419v1       663174 764 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e cebCap1.NW_016107979v1       311316  6 -   1024465 I
e manLeu1.NW_012105520v1       310329 5855 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=129347.000000
s hg38.chr15_KI270850v1_alt    205227 19 +    430880 ATTATTTACATAGGTGAAG
s panTro5.chr15              18014900 19 -  83230942 attatttacgtaggtgaag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17241175 19 -  99763055 attatttacgtaggtgaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303859 19 +    378907 attatttacagaggtgaag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102159378 19 + 121039945 ATTATTTACATAGGTGAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60364483 19 + 169600520 attatttacgtaggtgaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107362010 19 - 171882078 ATTATTTACATAGGTGAAA
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       316186 19 -   1458659 ATTATTTACATAGGTGAAA
i manLeu1.NW_012105520v1    M 5855 C 0
s colAng1.NW_012112253v1      7487019 19 -   9444221 attatttacataggtgaaa
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18029199 18 + 132174527 CTTATTTACATGGGTGAA-
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526534 18 -   3282555 attatttacataggagaa-
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       756497 18 -   3745603 attatttacataggtgaa-
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6779468 18 -  36342412 attatttacatagatgaa-
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 63884 19 -  40214260 ATTATCTACATAGGTGAAA
i canFam3.chr30             C 0 I 1
s dasNov3.JH569975              64189 16 -   2180720 ---ATTAACATCGGTGAAG
i dasNov3.JH569975          C 0 I 2
e micMur3.chr3                 940483 420 - 119751181 I
e proCoq1.NW_012149419v1       663174 764 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e cebCap1.NW_016107979v1       311316  6 -   1024465 I
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=1489135.000000
s hg38.chr15_KI270850v1_alt    205246 226 +    430880 AGTAAGCGCAATCAGGTATCT------------------------AGGAA--AGAATGAGGGGTTC-AGAGTATACGAAACC-----AATTTGAGCTATAACACAAGGAGGGTAGGATTCATGTAGAAGAGTTGTAGGAAATA-------TTGCTGATGTAAT-ATTTTGTACTCAAACAGTTCTGTGGATTGGTGACAGA----------------------------TTTTTTTT-----------------------TTCAGGTAAGTAAACTATTACCCCTGGAT-----ATTCA---TCTTTCTGTGTAGCTGGTTGAGA
s panTro5.chr15              18014919 229 -  83230942 agtaaacacaatcaggtatct------------------------aggaaagagaatgaggaattc-agagtatacgaaacc-----aatttgagctataacacaaggagggtaggattcatgtagaagagttgtaggaaata-------TTGCGGATGTAAT-ATTTTGTACTCAAACAGTTCTGTGGATTGGTGACAGA---------------------------TTTTTTTTT-----------------------TTCAGGTAAGTAAACTATTACCCCTGGAT-----ATTCA---TCTTTCTATGTAACTGGTTGAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17241194 228 -  99763055 agtaaacacaatcaggtatct------------------------aggaaagagaatgaggaattc-agagtatacgaaacc-----aatttgagctataacacaaggagggtaggattcatgtagaagagttgtaggaaata-------TTGCGGATGTAAT-ATTTTGTACTCAAACAGTTCTGTGGATTGGTGACAGA----------------------------TTTTTTTT-----------------------TTCAGGTAAGTAAACTATTACCCCTGGAT-----ATTCA---TCTTTCTATGTAACTGGTTGAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       303878 227 +    378907 agtaagcacaatcaggtatct------------------------aggaaagagaatgaggggttc-agagtatacgaaacc-----aatttgagctataacacaaggagggtaggattcatgtagaagagttgtaggaaata-------TTGCGGATGTAAT-ATTTTGTACTCGAACAGTTCTGTGGATTGGTGACAGA-----------------------------TTTTTTT-----------------------TTCAGGTAAGTAAACTATTACCCCTGGAT-----ATTCA---TCTTTCTATGTAGCTGGTTGAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102159397 228 + 121039945 AGTAAACACAATCAGCTATCT------------------------AGGAAAGAGAATGAGGGATTC-AGAGTATATGAAACC-----AATTTGAGCTACAACACAAGGAGGGTAGGATTCATGTAGACGAGTTGTAGGAAATA-------TTGCTGATGTAAT-ATTTTGTACTCAAACAGTTCTGTGGATTGGTGACAGA----------------------------TTTTTTTT-----------------------TTCAGGTAAGTGAACTATTACCCCTGGAT-----ATTCA---TCTTTCTGTGTAACTGCTTGATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60364502 226 + 169600520 aggaaacacaatcaggtatct------------------------aggaaagagaatgagagattc-agagtatacgagacc-----agtttgagctataacacaaggagggtaggattcatgtagaagagttgtaggaaata-------gtgctgATGTAATAATCTTGTACTCAAACAGTTCTGTGAATTGGTGACAGA------------------------------TTTTAT-----------------------TTCTAGTAAGTAAACTATTACCCC-AGAT-----ATTCA---TCTTTCTATGTAAGTGGTTGAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107362029 230 - 171882078 AGTAAACACAATCAGGTATCT------------------------AGGAAAGAGAATGAGAGATTC-AGAGTACACGAGACC-----AGTTTGAGCTATAACACAAGGAGGGTAGGATTCATGTAGAAGAGTTGTAGGAAATA-------TTGCCGATGTAAT-ATTTTGTACTGAAACATTTCTGTGAATTGGTGACAGA---------------------T-----TTTTTTTTT-----------------------TTCTAGTAAGTAAACTATTACCCCTGGAT-----ATTCA---TCTTGCTATGTAACTGGCTGAGA
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       316205 229 -   1458659 AGTAAACACAATCAGGTATCT------------------------AGGAAAGAGAATGAGAGATTC-AGAGTACACGAGACC-----AGTTTGAGCTATAACACAAGGAGGGTAGGATTCATGTAGAAGAGTTGTAGGAAATA-------TTGCTGATGTAAT-ATTTTGTACTGAAACATTTCTGTGAATTGGTGACAGA---------------------------TTTTTTTTT-----------------------TTCTAGTAAGTAAACTATTACCCCTGGAT-----ATTCA---TCTTGCTATGTAACTGGCTGAGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7487038 253 -   9444221 ggtaaacacaatcaggtagataaacacaatcaggtaaacacaatcaggaaagagaatgagggattc-agagtgtatgagacc-----agtttgagctatagcacaaggagggtaggattcatgtagaagatttgtaggaaata-------gtgctgACATAAT-ATCTTGTACTCAAATGGTTCTGTGGATTGGTGACGTA---------------------T-----CTTTCTTTT-----------------------TTCTGG-GAGTAAACTACTACCCCTGGAT-----ATTCC---TCTTTCTATGTGTCTGGTTGAGA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18029217 229 + 132174527 AGTAAACACAGTCATGTATCC------------------------AGGAAACATAATGAGGGATTC-TGAGTATATGAGACC-----AGTTTGAGCTATAACACAAGGAGGGTAGGATTCATGTAGAAGTGTTGTAGGAAGTA-------GTGCTGATGTAGT-AT-TTGTACTTAAGTGGTTTCGTGGATTGGTGATAGAT--------------------T-----TTTTTTTTT-----------------------TCCTGGTAAGTAAACTGTCA-CCCTGGAT-----AATCA---TCTTTCTGTATAACTGGTTGAGA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526552 227 -   3282555 agtgaacacaatgAGGTATCC------------------------AGGAAATAAAATGAAGGAATC-AGAGTATAGGAGACC-----AGTTTGAGCTATAACACAAGGAGAGTAGGATTCATGTAAAAGTGTTGTAGGAAGTA-------GTGCTGATGTAGT-ATCCTGTACTTAAATGGTTTTGTGGATTGGTGATAGA----------------------------TTTTTTTT-----------------------TCCTGGTAAGTAAACTGTTA-CCCTGGAT-----ATTCA---TCTTTCTGTATAACTGATTGAGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       311322 228 -   1024465 AGTAAACACAATCAGGTATCC------------------------AGGAAAGGTAATGAAGGATTC-AGAGAATACGAGACC-----AGTTTGAGCTATAACACAAGGAGGGTAGGATTCATGTAGAAGTGTTGTTGGAAGTA-------GTGCTGACGTAGT-ATCTTGTACTTAAATGGTTTTGTGGATTGGTGATAGA---------------------------TTTTTTTTT-----------------------TCCTGGTAAGTAAACTGTCA-CCCTGGAT-----ATTCA---TCTTTCTGTATAACTGGTTGAGA
i cebCap1.NW_016107979v1    I 6 C 0
s aotNan1.NW_018511953v1       756515 228 -   3745603 agtaaacacaatcaggtatcc------------------------aggaaagataatgagggattc-agagtatatgagacc-----agtttgagctgtaacacaaggagggtaggattcatgtagaagtgttgtaggaagta-------gtgctgACATAGT-ATCTTGTACTTAAATGGTTTCGTGGATTGGTGATAGA---------------------------TTTTTTTTT-----------------------TTCCTGTAAGTAAACTGTCA-CCCTGGAT-----ATTCA---TCTTTCTGTATAACTGGTTGAGA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6779486 188 -  36342412 agtaaacacaatcacatatct------------------------aggaaagaacaggatatattc-agagtataccacg-c-----agtttgggctctaacacaaagtgggtaggaTTCATATAGA---------------------------------AAC-A------------------CCATGGAGTAGTAAGACT---------------------T-----TTTTCTTTT-----------------------TCTTTGTAAGCAAACTATTACTCCTCGGTATTGAATTCA---TCTTTC--CTTAACTGGGGCAAG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 63904 242 -  40214260 AGTAAATATAATCACATATCT------------------------AGGAAAGAATGTGATGTATTC-ATAGCACACCAGACCAGACGAGTTTGAACTAGACAGCAAGGTGGGTAGAACTCCTATGGAAGAGTTACATGAAA---------------ATGTGGT-TTTT---------ATAGGACTGTGGAGTGGTGCAGGGCTTTTTGTTTTTTTGTTTTCAT-----TTTCTTTTT-----------------------TCCTGGTAAGCAAACTATGACCTGAGGGT-----ATTGAATTTCTCTCTCATTAGCTGGTTCAGG
i canFam3.chr30             I 1 C 0
s dasNov3.JH569975              64207 267 -   2180720 AGTAAACATGATCATATATAC------------------------AGAGAAGAGCCTGATGTATTCAAGAGTATAGCGGAAC-----AGTTTGAGCTAAAACTTCA-GAGGGTAGGATCCATATAGATGGGTTGTAAAATGCAAGGATGGGTCTTGACACAAA-AGCTTGTAGTTCTAGAGGAATATG-ATCAGTAGCAAA---------------------TAAGTCTTTTGTCTTATCTAATCTTATCTAATCTATCATCCTGGTAAGGAAACCATTACCCATGTGTATTGAATTCA---TCTTTC--TTTTGCTGGTTCCCA
i dasNov3.JH569975          I 2 C 0
e micMur3.chr3                 940483 420 - 119751181 I
e proCoq1.NW_012149419v1       663174 764 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=462347.000000
s hg38.chr15_KI270850v1_alt    205472 55 +    430880 AACAGGGGAGTAACAGTAAAGAAACTGTTTTAGA---ATAAATCTGGTGACAGCAGAA
s panTro5.chr15              18015148 53 -  83230942 AAT--GGGAGGAAGAGTAAAGAAACTGTTTTCGA---ATAAATCTGGTGACAGCAGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17241422 53 -  99763055 AAT--GGGAGGAAGAGTAAAGAAACTGTTTTCGA---ATAAATCTGGTGACAGCAGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       304105 55 +    378907 AACAGGGGAGTAACAGTAAAGAAACTGTTTTAGA---ATAAATCTGGTGACAGCAGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102159625 53 + 121039945 AAC--AGAAGTAACAGTAAAGAAACTGTTTTAGA---ATAAATCTGGCGACAGCAGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60364728 55 + 169600520 AACAGGGGAGTAACAGTAAAGAAACTGTTTTAGA---ATAAATCTGGTGACAGCGGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107362259 55 - 171882078 AACAGGGGAGTAACAGTAAAGAAACTGTTTTAGA---ATAAATCTGGTGACAGCGGAA
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       316434 55 -   1458659 AACAGGGGAGTAACAGTAAAGAAACTGTTTTAGA---ATAAATCTGGTGACAGCGGAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7487291 55 -   9444221 AACAGGGGAGTAGCAGTAAATAAACCGTTTTAGA---ATAAATCTGGTGACAGCAGAA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18029446 53 + 132174527 AAC--GGAAATAACAGTAAAGAAACTGTTGTAGA---GTAAATCTGGTGATAGCAGAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526779 55 -   3282555 AACAGGGAAATAACAGTAAAGAAACTGTTGTAGA---GTAAATCTGGTGACAGCAGAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       311550 55 -   1024465 AACAGAGAAATAACAGTAAAGAAACTGTTGTAGA---GTACATCTGGTGACAGCAGAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       756743 55 -   3745603 AACAGGGAAATAACAGTAAAGAAACTGTTGTAGA---GTAAATCTGGTGATAGCAGAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 940903 58 - 119751181 AACAAGGGAATAACAGTAAAGAAAATGTTTTAGAAAGATAAATCTGGTGGCAGTAGAA
i micMur3.chr3              I 420 I 898
s otoGar3.GL873530            6779674 58 -  36342412 AACAAGGGAATATCAGGAAAGAAAATGTTTTAGAAAGATAAAACTGGTGACAGTAGAA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 64146 55 -  40214260 AACAGGAAAATA-CAGGAAAGAGAATGTTTTAGAA--GGAAATATAACAATGGAAGAA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              64474 48 -   2180720 AACAGAGAAATAACAGTATAGAGA-------AAG---TTATATCTGGTGATAGTAGAA
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       663174 764 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=509345.000000
s hg38.chr15_KI270850v1_alt    205527 66 +    430880 GAGAATATGAGACACATTGTGCTCACAGAGCCTAGAAGAGTGTGACAGTAGTTGAGGG-C--------------------------------AC--CGCTG
s panTro5.chr15              18015201 66 -  83230942 GAGAATATGAGACACATTGTGCTCACAGAGCCTAGAAGAGTGTGACAGTAGTTGAGGG-C--------------------------------CA--TGCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17241475 66 -  99763055 GAGAATATGAGACACATTGTGCTCACAGAGCCTAGAAGAGTGTGACAGTAGTTGAGGG-C--------------------------------CA--TGCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       304160 66 +    378907 GAGAATATGAGACACATTGTGCTCACAGAGCCTAGAAGAGTGTGACAGTAGTTGAGGG-C--------------------------------AC--CGCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102159678 66 + 121039945 GAGAATATGAGATACATTGTGCTCACAGAGCCTAGAAGAGTGTGACAGTAGTTGAGGG-C--------------------------------CC--CGCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60364783 66 + 169600520 GAGAATATGAGACACACTGTGCTCACAGAGCCTAGAAGAGTGTGACAGTAGTTGAGGG-C--------------------------------CA--CGCCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107362314 66 - 171882078 GAGAATATGAGACACACTGTGCTCACAGAGCCTAGAAGAGTGTGACAGTGGTTGAGGG-C--------------------------------CA--CGCCG
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       316489 66 -   1458659 GAGAATATGAGACACACTGTGCTCACAGAGCCTAGAAGAGTGTGACAGTAGTTGAGGG-C--------------------------------CA--CGCCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7487346 66 -   9444221 GAGAATATGAGACACATTGTCCTCACAGAGCCTAGAAAAGTGTGACAGTAGTTGAGGG-C--------------------------------CA--CGCTG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18029499 66 + 132174527 GAGAATATGAGACACATTGTGCTCACAGAGCCTAGAAAGGTGTGACAGTAGTTGAGGG-C--------------------------------CA--CACTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526834 66 -   3282555 GAGAATATGAGACACATTGTGCTCACAGAGCCTAGAAAGGTGTGACAGTAGTTGAGGG-C--------------------------------CA--CGCTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       311605 66 -   1024465 GAGAATATGAGACACATTGTGCTCACAGAGCCTAGAAAGTTGTGACAGTAGTTGAGGA-C--------------------------------CA--TGCTG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       756798 66 -   3745603 GAGAATATGAGACACATTGTGCTCACGGAGCCTAGAAAGGTTTGACAGTAGTTGAGGG-C--------------------------------CA--CGCTG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6779732 62 -  36342412 GAGGCTACAAGACAAATTGTGCTCACAA-----AGAAGGATGTGATGCTACCTGAGAGCC--------------------------------CA--GGCTG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 64201 87 -  40214260 ----------GACA-ATGGTGTTCAGAAAGCCTAGAAGAATGCAAGGCTAGTTAAGAG-CTGATGGCCCTGTCTTggggcatctgagtggctca--ttctg
i canFam3.chr30             C 0 I 244
s dasNov3.JH569975              64522 67 -   2180720 GAGATTATAAGACAAATTATATTCACAATGCCTTGAAG-GCCTGAGGCTAGTTGAGAG-C--------------------------------TGTTTGCTG
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 940961 898 - 119751181 I
e proCoq1.NW_012149419v1       663174 764 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=309117.000000
s hg38.chr15_KI270850v1_alt    205593 46 +    430880 TTGTCTTAGAGTGAAGTGAGGAGAACCTACATTGGTGTGGTAGTCA
s panTro5.chr15              18015267 46 -  83230942 TTGTCTTAGAGTGAAGTGAGGAGAACTTACATTGGTGTGGTAGTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17241541 46 -  99763055 TTGTCTTAGAGTGAAGTGAGGAGAACTTACATTGGTGTGGTAGTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       304226 46 +    378907 TTGTCTTAGAGTGAAGTGAGGAGAACCTACATTGGTGTGGTAGTCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102159744 46 + 121039945 TTTTCTTAGAGTGAAGTGAGGAGAACCTACATTGGTGTGGTAGTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60364849 46 + 169600520 TCATCTTAGAGTGAAGTGAGGAGAACCTACGTTGGTTTGGTAGTCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107362380 46 - 171882078 TCATCTTAGAGTGAAGTGAGGAGAACCTATGTTGGTTTGGTAGTCC
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       316555 46 -   1458659 TCATCTTAGAGTGAAGTGAGGAGAACCTACGTTGCTTTGGTAGTCC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7487412 46 -   9444221 TTGTCTTAGAGTGAAGTGAGGAGGACCTACGATGGTTTGGTAGTCA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18029565 46 + 132174527 TTGTCTTAGAGTGAAGTGAGGAGAGCCTACATTGGTTTGGTAGTTC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526900 44 -   3282555 TTGTCTTAGAGTGC--TGAGGAGAGCCTCCATTGCTTTGGTAGTTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       311671 39 -   1024465 TTGTCTTAGAGTGAAGTGAGGA-------CATTGGTTTGGTAGTCG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       756864 46 -   3745603 TTGTCTTAGAGTGGAGTGAGGAGAACCTACATTGGTTTGGTAGTCG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6779794 46 -  36342412 CTGTCTGAGAGGGAAGGGATATGGCCCTAACCTGGTGCAGCAGTAA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 64532 40 -  40214260 CTGTCTTAGAGTAAAGTGAAGACACCCTAATTTGGTACCG------
i canFam3.chr30             I 244 C 0
s dasNov3.JH569975              64589 42 -   2180720 CTGTTGTAGAGTGAAGTGATGAGGACCTAAATCA----AGCAGTAA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 940961 898 - 119751181 I
e proCoq1.NW_012149419v1       663174 764 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1819673 1331 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=1483329.000000
s hg38.chr15_KI270850v1_alt    205639 160 +    430880 TGGGAGTGGAAGGAGGAATGAAATGTGAAAGCCCATTGGAGGCAGAATCAAAATGCCTTGGTCTTAATAGTCAACTATTA-------AGGAGAAATTATTGGCTGACTTAGGAAGAAGTGAAAAATG-----------TGAAATACCAATAAAACACCAGG-CTTGT-GATTTTAG--TCAG
s panTro5.chr15              18015313 167 -  83230942 TGGGAGTGGAAGGAGGAATGTAATGTGAAAGCTCATTGGAGGCAGAATCAAAATGGCTTGGTCTTCATAGTCAAATATTAAGTAAGGAGGAGGAATTATTGGCTGACTTAGGAAGAAGTAAAAAATG-----------TGAAATACCGATAAAACACCAGG-CTTGC-AATTTTAG--TCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17241587 167 -  99763055 TGGGAGTGGAAGGAGGAATGTAATGTGAAAGCTCATTGGAGGCAGAATCAAAATGGCTTGGTCTTCATAGTCAAATATTAAGTAAGGAGGAGGAATTATTGGCTGACTTAGGAAGAAGTAAAAAATG-----------TGAAATACCAATAAAACACCAGG-CTTGC-AATTTTAG--TCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       304272 164 +    378907 TGGGAGTGGAAGGAGGAATGAAATGTGAAAGCCCATTGGAGGCAGAATCAAAATGGCTTGGTCTTAATAGTCAACTATTAAGTA---AGGAGGAATTATTGGCTGACTTAGGAAGAAGTGAAAAATG-----------TGAAATACCAATAAAACACCAGG-CTTGC-AATTTTAG--TCAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102159790 167 + 121039945 TGGGGGTGGAAGGAGGAATGAAATGTGACAGCTCATTGGAGGCAGAATCCAAATGGCTTGGTCTTCATAGTCAACTATTAAGTGAGGAGGAGGAATTATTGGCTGACTTAGGAAGAAGTAAAAAATG-----------TGAAGTACCAATAAAACACCAGG-CGTGC-AATTTTAG--TCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60364895 167 + 169600520 TGGGAGTGGAAGGAGGAATGAAATGTGAAAGCTCATTGGAGGCAGAATCAAAATGGCTTGGTCTTCATAGTCAACTATTAAGTGAGGAGGAGGAATTATTGGCTGACTTAGGAAGAAGTAAATAATG-----------TGAAATGCCAATAAAACACAAAA-CTTGC-CATTTTAG--TCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107362426 167 - 171882078 TGGGAGTGGAAGGAGGAATGACATGTGAAAGCTCATTGGAGGCAGAATCAAAATGGCTTGGTCTTCATAGTCAACTATTAAGTGAGGAGGAGGAGTTATTGGCTGACTTAGGAAGAAGTAAAAAATG-----------TGAAATACCAACAAAACACCAAG-CTTGC-AATTTTAG--TCAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1821004 167 -   1987038 TGGGAGTGGAAGGAGGAATGACATGTGAAAGCTCATTGGAGGCAGAATCAAAATGGCTTGGTCTTCATAGTCAACTATTAAGTGAGGAGGAGGAATTATTGGCTGACTTAGGAAGAAGTAAATAATG-----------TGAAATGCCAATAAAACACAAAA-CTTGC-CATTTTAG--TCAG
i cerAty1.NW_012002657v1    I 1331 C 0
s manLeu1.NW_012105520v1       316601 167 -   1458659 TGGGAGTGGAAGGAGGAATGCCATGTGAAAGCTCATTGGAGGCAGAATCAAAATGGCTTGGTCTTCATAGTCAACTATTAAGTGAGGAGGAGGAGTTATTGGTTGACTTAGGAAGAAGTAAAAAATG-----------TGAAATACCGACAAAACACCAAG-CTTGC-AATTTTAG--TCAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7487458 167 -   9444221 TAGGAATGGAAAGAGGAATGAAATTTGAAAGCTCATTGGTGGCAGAATCAAAATGGCTTGGTCTTTGTAGTCAACTATTAAGTGAGGAGGAGGAATTATTGGCTGACTTAGGAAGAAGAAAAAAGTG-----------TTAAATACCGATAAGACACAAAG-CTTGC-AATTTTAG--TCAG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18029611 167 + 132174527 TGGGAATGGAAGGAGGAATGAAACGTAAAAGCTCATTGGAAGCAGAATCAAAATGGCTTGGTCTTCATAGTCAACTATCAAGTGAGGAGGAGGAATTACTGGCTGACTTGGCAAGAAGTAAAAGATG-----------TGAAATACTGATAAAACACAATT-CTGGC-CATCTCAG--TCAG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             526944 167 -   3282555 TGGGAGTGGAAGGAGGAATGAAATGTACAAGCTCATTGGAAGCAGAATCAAAATGGCTTGGTCTTCATAGTCAACAATCAAGTGAGGAGGAGGAATTACTGGCTGACTTGGGAAGAAGTAAGAAATG-----------TGAAATACTGATAAAACACAATT-CTGGC-CATCTCAG--TCAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       311710 167 -   1024465 TGGGAATGGAAGGAGGAATGAAATGTAAAAGCTCATTGGAAGCAAAATCAAAATGGCTTGGTCTTCATAGTCAACTATCAAGTGAGGAGGAGGAATTACTGGCTGACTTGGGAAGAAGTAAAAAATG-----------TGAAATACTCATAAAACGCAATT-CCAGC-CATCTCAG--TCAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       756910 167 -   3745603 TGGGAATGGAAGGAGGAATGAAATGTGAAAGCTCATTGGAAGCAGAATCAAAATGGCTTGGTCTTCATAGTCAACTCTCAAGTGAGGAGGAGGAATTACTGGCTGACTTGGGAAGAAGTAAAAAATG-----------TGAAATACTGATAAAACACAATT-CCGGC-CATCTCAG--TCAG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6779840 161 -  36342412 GGGGAGTGGGAAGAGCAGGTAAATGGAAAAGCTCAATTGAGGCAGAATCAAGATGACTTGTTCTTC--AGTCAACTATTCAGTGAAAAGGATGAGTTA---ACTAACTTGG--AGAACTAAAAGGTG-----------TGAAATACTGATGGAACTCAGAG-CTTGC-AATCTCAGAATTA-
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 64572 181 -  40214260 TGGAAGTGGAAAGATGAATGGAAGGTGAGCACTAATGTGAAGCAGAACCGCAGTGACTTGGTCTTCATAGTTCACTGTTACATGATGGGGAGGACTTACTGGCTGATGAGAGAAGAACTAAAAAAGGTGAAGGCCTGATGAAGGATTGATAAAACACAGAGCCTTGG-AACCTCAGGCTCAG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              64631 167 -   2180720 TGGGAATGGAGAGATGAATTAAATGTAAAAATTAATTTGAAGCAGAATCAAAATGACTTGGTCTTTTTAGCTCATTATTGAATGAGGAGGAAGAATT-TTGTCTGACAAAATAAGAACTAAAACATG-----------TGAAAG--TGATAAAATGCAGAA-CTTGCAAATCTCAGAATTTG
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 940961 898 - 119751181 I
e proCoq1.NW_012149419v1       663174 764 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=347624.000000
s hg38.chr15_KI270850v1_alt    205799 37 +    430880 GGTAAAGCTTAAGCATTGTGTGATTCTA-GATAGATTA
s panTro5.chr15              18015480 37 -  83230942 GGTAAAGCTTAAGCGTTGTGTGATTCTA-GATAGATTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17241754 37 -  99763055 GGTAAAGCTTAAGCGTTGTGTGATTCTA-GATAGATTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       304436 37 +    378907 GGTAAAGCTTAAGCATTGTGTGATTCTA-GATAGATTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102159957 37 + 121039945 GGTAAAGCTCAAGCATTGTGTGATTCTA-GATAGATTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60365062 37 + 169600520 GGTAAAACTTAAGCATTGTGTGATTCTA-GATAGACTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107362593 37 - 171882078 GGTAAAGCTTAACCGTTGTGTGATTCTA-GATAGATTA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1821171 37 -   1987038 GGTAAAACTTAAGCATTGTGTGATTCTA-GATAGACTA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       316768 37 -   1458659 GGTAAAGCTTAACCGTTGTGTGATTCTA-GATAGATTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7487625 37 -   9444221 GGTAAAGCTTAAGCATTGTGTGATTCTA-GATAGATTA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18029778 37 + 132174527 GGTAAAGCTGAAGCACTGTGTGATTCTA-GATAGATTA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             527111 38 -   3282555 GGTAAAGCTGAAGCACTGTGTGATCCTAGGGTAGATTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       311877 37 -   1024465 GGTAAAGCTGAAGCACTGTGTGATTCTA-GATAGATTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       757077 33 -   3745603 GGTAAAGCTGAAGTACTGTGTGATTCTA-----GATTA
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       663938 37 -   2566024 GGTAAAGTTTAAGCATTGTGTGATTCTG-GGTAGATTA
i proCoq1.NW_012149419v1    I 764 I 379
s otoGar3.GL873530            6780001 32 -  36342412 GGTGACATTTATGCATTGTGTGATTGAG-CGCA-----
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 64753 33 -  40214260 CCTAACACTTAAGCACTGAGT----CTG-ATGAGATTA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              64798 36 -   2180720 ACTAAAG-TTAAGCATTGCATGATTCTA-GACAGATTA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 940961 898 - 119751181 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=332250.000000
s hg38.chr15_KI270850v1_alt    205836 43 +    430880 CTGAGGAG---TTTTGTTCCATTTATTTTATGT-CCATATCTTTGAG
s panTro5.chr15              18015517 44 -  83230942 TTGAGCAG---TTTTGTTCCATATATTTTATATCCCATATCTTTGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17241791 44 -  99763055 TTGAGCAG---TTTTGTTCCATATATTTTATATCCCATATCTTTGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       304473 44 +    378907 CTGAGGAG---TTTTGTTCCATTTATTTTATATCCCATATCTTTGAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102159994 44 + 121039945 TTGAGCAG---TTTTGTTCCATTTATTTTATATCCCATATCTTTGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60365099 44 + 169600520 TTGAGCAG---TTTTCTTCCATTTATTTTATATCCCATATCTTTGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107362630 44 - 171882078 TTGAGCAG---TTTTGTTCCATTTATTTTATATCCCATATCTTTGAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1821208 44 -   1987038 TTGAGCAG---TTTTCTTCCATTTATTTTATATCCCATATCTTTGAG
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       316805 44 -   1458659 TTGAGCAG---TTTTGTTCCATTTATTTTATATCCCATATCTTTGAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7487662 44 -   9444221 TTAAGCAG---TTTTGTTCCATAAGTTTTATATCCCATATCTTCTAG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18029815 44 + 132174527 TTGATCAG---TTTTGTTCCATGTATTTTATATCCCATATCTTCTAG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             527149 44 -   3282555 TTGATCAG---TTTTGTTCCATGTATTTTATATCCCTTATCTTCTAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       311914 44 -   1024465 TTGATCAG---TTTTGTTCCATGTATTTTATATCCCATATCTTCTAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       757110 44 -   3745603 TTGATCAG---TTTTGTTCCATGTATTTTATATCCCATATCTTCTAG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6780033 13 -  36342412 ----------------------------------CAATGTCTTCTAG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 64786 45 -  40214260 TTGAGCTG--TTTTTGTCCTATATATGTTTTATCCTCCATCTTCTAG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              64834 44 -   2180720 TTGAGCAATGTTTTTGtttttttatatatatat---atatttttGGG
i dasNov3.JH569975          C 0 I 4010
e micMur3.chr3                 940961 898 - 119751181 I
e proCoq1.NW_012149419v1       663975 379 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=53146.000000
s hg38.chr15_KI270850v1_alt    205879 12 +    430880 CTATGATTCTAT-
s panTro5.chr15              18015561 12 -  83230942 CTATGATCCTAT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17241835 12 -  99763055 CTATGATCCTAT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       304517 12 +    378907 CTATGATCCTAT-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102160038 12 + 121039945 CTATGATCCTAT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60365143 12 + 169600520 CTATAATCCTAT-
i rheMac8.chr7              C 0 I 360
s macFas5.chr7              107362674 12 - 171882078 CTATGATCCTAT-
i macFas5.chr7              C 0 I 1
s cerAty1.NW_012002657v1      1821252 12 -   1987038 CTATAATCCTAT-
i cerAty1.NW_012002657v1    C 0 I 359
s manLeu1.NW_012105520v1       316849 12 -   1458659 CTATGATCCTAT-
i manLeu1.NW_012105520v1    C 0 I 1
s colAng1.NW_012112253v1      7487706 12 -   9444221 CTATGACCCTAT-
i colAng1.NW_012112253v1    C 0 I 1
s calJac3.chr10              18029859  9 + 132174527 CTGTGACCC----
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             527193  9 -   3282555 CTGTGACCC----
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       311958  9 -   1024465 CTGTGATCC----
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       757154  9 -   3745603 CTGTGACCC----
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6780046 11 -  36342412 TTGCTACCATA--
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 64831 13 -  40214260 CTATCATCCTCTT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 940961 898 - 119751181 I
e proCoq1.NW_012149419v1       663975 379 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              64878 4010 -   2180720 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=118065.000000
s hg38.chr15_KI270850v1_alt    205891 25 +    430880 CCTTTATTTCTTGACATACCCAAAC
s panTro5.chr15              18015573 25 -  83230942 TGTTTATTTCTTTACATACCCAAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17241847 25 -  99763055 TGTTTATTTCTTTACATACCCAAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       304529 25 +    378907 TCTTTATTTCTTGACATACCCAAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102160050 25 + 121039945 TCTTTATTTCTTGACATACCCAAAC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107362687 25 - 171882078 TCTTTATTTCTTGACATACCCAAAC
i macFas5.chr7              I 1 C 0
s manLeu1.NW_012105520v1       316862 25 -   1458659 TCTTTATTTCTTGATATACCCAAAC
i manLeu1.NW_012105520v1    I 1 C 0
s colAng1.NW_012112253v1      7487719 25 -   9444221 TCTTTATTTCTTGACACAGGCAAAC
i colAng1.NW_012112253v1    I 1 C 0
s calJac3.chr10              18029868 15 + 132174527 ----TAttttttgacatag------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             527202 21 -   3282555 ----TATTTTCTGACATAGCCAAAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       311967 21 -   1024465 ----TATTTTTTGACATAACCAAAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       757163 21 -   3745603 ----TATTTTTTGACATAGCCAAAT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6780057 23 -  36342412 --TTTATTTCTTGACATAGGCAATT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 64844 25 -  40214260 CCTCTGTTTCTTATCACAGCCAAAC
i canFam3.chr30             C 0 I 187
e micMur3.chr3                 940961 898 - 119751181 I
e proCoq1.NW_012149419v1       663975 379 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              64878 4010 -   2180720 I
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1821264 359 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I
e rheMac8.chr7               60365155 360 + 169600520 I

a score=47053.000000
s hg38.chr15_KI270850v1_alt    205916 10 +    430880 ATTTTTTAAA
s panTro5.chr15              18015598 10 -  83230942 ATTTTTTAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17241872 10 -  99763055 ATTTTTTAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       304554 10 +    378907 ATTTTTTAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102160075 10 + 121039945 ATTTTTTAAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107362712 10 - 171882078 ATTTTTGAAA
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       316887 10 -   1458659 ATTTTTGAAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7487744 10 -   9444221 ATtttttaaa
i colAng1.NW_012112253v1    C 0 I 9
s saiBol1.JH378276             527223 10 -   3282555 ATTTCtttaa
i saiBol1.JH378276          C 0 I 10
s cebCap1.NW_016107979v1       311988 10 -   1024465 ATTtttttaa
i cebCap1.NW_016107979v1    C 0 I 10
s aotNan1.NW_018511953v1       757184 10 -   3745603 ATtttttaaa
i aotNan1.NW_018511953v1    C 0 I 10
s otoGar3.GL873530            6780080  9 -  36342412 Ttttttaac-
i otoGar3.GL873530          C 0 I 9
s canFam3.chr30                 65056 10 -  40214260 Attttttaaa
i canFam3.chr30             I 187 C 0
e micMur3.chr3                 940961 898 - 119751181 I
e proCoq1.NW_012149419v1       663975 379 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e calJac3.chr10              18029883  0 + 132174527 C
e dasNov3.JH569975              64878 4010 -   2180720 I
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1821264 359 -   1987038 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I
e rheMac8.chr7               60365155 360 + 169600520 I

a score=934695.000000
s hg38.chr15_KI270850v1_alt    205926 127 +    430880 ----------------Ctattgtgatacagcttttatatgataagtctcactctttga-agtgtacagtttggtgg---tttttagtatatt--cagagttatgcagccattaccactacctaatttcagaaccttttcttc---tccccag-
s panTro5.chr15              18015608 127 -  83230942 ----------------Ctattgtgatacagcttttatatgataagcctcaccctttga-agtgtacagttcagtgg---tttttagtatatt--cagagttatgcagccattaccattagctaatttcagaaccttttcttc---tccccaa-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17241882 127 -  99763055 ----------------Ctattgtgatacagcttttatatgataagcctcaccctttga-agtgtacagttcagtgg---tttttagtatatt--cagagttatgcagccattaccattagctaatttcagaaccttttcttc---tccccaa-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       304564 127 +    378907 ----------------Ctattgtgatacagcttttatatgataagcctcactctttga-agtgtacagtttggtgg---tttttagtatatt--tagagttatgcagccattaccactacctaatttcagaaccttttcttc---tccccaa-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102160085 127 + 121039945 ----------------Ctattgtgatacagcttttatatgataagcctcaccctttga-agtgtacagttcagtga---tttttagtatatt--cagagttatgcagccattaccactacctcatttcagaaccttttcttg---tccccaa-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60365515 127 + 169600520 ----------------ctattgtgatacagttttcatatgataagcctcacccttcaa-agtgtacagttcagtag---tttttagtatatt--cagagttatgcagccattagcactacctaatttcagaaacttttcatc---tccccaa-
i rheMac8.chr7              I 360 C 0
s macFas5.chr7              107362722 127 - 171882078 ----------------CGATTGTGATACAGTTTTTAT---ATAAGTCAcaccctttta-agtgtacatttcagtagttttttttagcatatt--cagagttatgcagccattaccactacctaatttcagaaccttttcttc---tctccag-
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1821623 127 -   1987038 ----------------ctattgtgatacagttttcatatgataagcctcacccttcaa-agtgtacagttgagtag---tttttagtatatt--cagagttatgcagccattagcactacctaatttcagaaacttttcatc---tccccat-
i cerAty1.NW_012002657v1    I 359 C 0
s manLeu1.NW_012105520v1       316897 127 -   1458659 ----------------CGattgtgatacagtttttatatgataagtctcaccctttga-agtgtacatttcagtag--ttttttagcatatt--cag-tttatgcagccattaccactacctaatttcagaaccctttcttc---tcttcag-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7487763 126 -   9444221 ----------------ttattgtgatacagtttttatatgataagcctcagccttc-a-agtgtacagtttagtgg---tttttagtatatt--cagagttatgcaaccattaccactacctaattttggaacattttcatc---tctccaa-
i colAng1.NW_012112253v1    I 9 I 12233
s calJac3.chr10              18029883 121 + 132174527 ---------------------------cagtttatatatgataaagctcaccctttga-agtgtacaattcggtgg---tttttagtatattcgcagagttgtgcagccattaccactacctaatttcagaacattttcatcactttttcag-
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             527243 132 -   3282555 ----------------ttattgagatacagtttatatatgataaagctcaccttttga-aatgtacaattcggtgg---cttttagtatattcgcagagttgtgcagccattaccactacctaatttcagaacattttcatcactttttcag-
i saiBol1.JH378276          I 10 C 0
s cebCap1.NW_016107979v1       312008 132 -   1024465 ----------------ttattaagatatagtttatatatgataaagctcaccctttga-agtgtacaattcggtgg---tttttagtatattcacagagttgtgcagccattaccactacctaatttcagaacattttcatcactgtttcag-
i cebCap1.NW_016107979v1    I 10 C 0
s aotNan1.NW_018511953v1       757204 132 -   3745603 ----------------ttattgagatacagtttacatatgataaagctcaccctttga-agtgtacaatttggtgg---tttttaatatattcgcagagttgtgcagccattaccactacctaatttcagaacattttcatcactttttcag-
i aotNan1.NW_018511953v1    I 10 C 0
s otoGar3.GL873530            6780098 120 -  36342412 ----------------ttattatgatata---catatgtgctaaaactcactcttttatagtgtacagtccagtgg---tttatagta------tagagttgtgcagccatcatcacaagtt-atttcaaaacattttcatc---accccca-
i otoGar3.GL873530          I 9 C 0
s canFam3.chr30                 65066 147 -  40214260 taacagtttcattgcttcgttgtgatacaattcacatatgctaaaactcaacctttgaaagtgtacagttcagtgg---tttttggtatattcatagagttgtgtaaacatcaccactgtcttatttcaaaacattttcatt---actccctg
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 940961 898 - 119751181 I
e proCoq1.NW_012149419v1       663975 379 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              64878 4010 -   2180720 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=1255383.000000
s hg38.chr15_KI270850v1_alt    206053 163 +    430880 aaagaaaccccatgcccattagcagtcactctgtata--ctcgtc----tcccccaccgttgatcctggcgacctctgatctaatttc--tgtctctgtagatttgcctatcctggacatttcatataaatagaatcatacaaaatgtggcattttgtaattgacttttCT
s panTro5.chr15              18015735 163 -  83230942 aaagaaaccccatacccattagcagtcgctctgtgtg--ctcgtc----tcccccaccgttcatcctggcaacctctgatctaatttc--tgtctctgtagatttgcctatcctggatatttcatataaatagaatcaaacaaaatgtggcattttgtgactgacgtttct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17242009 163 -  99763055 aaagaaaccccatacccattagcagtcgctctgtgtg--cttgtc----tcccccaccgttcatcctggcaacctctgatctaatttc--tgtctctgtagatttgcctatcctggatatttcatataaatagaatcaaacaaaatgtggcattttgtgactgacttttCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       304691 163 +    378907 aaagaaaccccatgcccattagcagtcactctgtata--ctcgtc----tcccccaccgttgatcctggcgacctctgatctaatttc--tgtctctgtagatttgcctatcctggacatttcatataaatagaatcatacaaaatgtggcattttgtgattgacttttCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102160212 163 + 121039945 aaagaaaccccgtacccattagccgtcactccctata--cccatc----tcccctgccgttgatcctggcaacctctgatctaatttc--tgtctctgtagatttgcctatcctggacatttcatataaatagaatcatacaaaatgtggcattttgtgactgacttttCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60365642 163 + 169600520 aaagaaaccctgtacccattagcagtcactccctata--cccata----tcccccaccatggatcctggcaacctgtgatctaatttc--tatctctgtagatttgcctatcctggacatttcatacaaatagaatcatacaaaatgtggcattttgtgactgacttttCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107362849 163 - 171882078 aaagaaaccctgtacccattagcagtcactccctata--cacatt----tcccccaccattgatcctggcaatgtctgatctaatttc--tgtctctgtagatttgcctatcctggacatttcatataaatagaatcatacaaaatgtggcattttgtgactgacttttCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1821750 163 -   1987038 aaagaaaccctgtacccattagcagtcactccctata--cccata----tcccccaccgttgatcctggcaacctgtgatctaatttc--tatctctgtagatttgcctatcctggacatttcatacaaatagaatcatacaaaatgtggcattttgtgactgacttttct
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       317024 120 -   1458659 aaagaaaccctgtacccattagcagtcactccctata--cacatt----ttccccaccattgatcctggcaatgtctgatct---------------------------------------------aaatagaatcatacaaaatgtgacattttgtgactgacttttCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7500122 162 -   9444221 aaagaaaccccgtacccattagcagtcactccctgta--cctgta----tcccccaccgttgatcctggcaacctctgatctaatttc--tgtctctgtagatttgcctattctggacatttcatgtaaatagaatcatacaaaacgtggcattttgtgactggc-tttct
i colAng1.NW_012112253v1    I 12233 C 0
s calJac3.chr10              18030004 164 + 132174527 aaagaaaccctgtacccattagcagtcatttcctata--cccctc----tcccccaccattgatcctggcaacctctcatctaatttctatatctctgtagatttgcctatactggatatttcatataaatagaatcatacaaaatgtggctttttgcaactggtgttt-t
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             527375 162 -   3282555 aaagaaactctctacccattagcagtcatttcctata--cccctc----tccccagccattgatcctggcaacctctcttctaatttc--tgtctctgtagatttgcctatgctggacatttcatataaatagaatcatacaaaacgtggctttttgcgactggtgttt-t
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       312140 162 -   1024465 aaagaaaccctgtacccattagcagtcatttcctata--cccctt----tcccccaccattgatcctcgaaacctctcatctaatttc--tttctctgtagatttgcctatgccagacatttcatatgaatagaatcatacaaaatgtggctttttgtgactggtgttt-t
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       757336 161 -   3745603 aaagaaaccctgtacccattagcagtcatttcctata--ctcctc----tcccccaccattgatcctggcaacctctcatctagtttc--tctttctgtagatttgcctatgctggacctttcttgtaaatagaatcatacaaaatgtggctttttgcaactggcg-tt-t
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6780218 161 -  36342412 aaagaagccccatacccattagcagtcactccctatatccctatc----tttctcatctttggtcctggcaactactaatct---ttc--tgtctttctagatttgcctatcctggacattttagataaacagaatcatataaaatgttgc-ctttgtaactgaattcttt
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 65213 162 -  40214260 aaagaaatcccgtacccggtagcagtcatttctcatt--cccactgcagccccccacc-----cactgccaaccactaatctccattc--tgtctctaaggattttcctgtttggcacctttcatataagtgggaccatacaaaatgtagccttctatggctggcttcttt
i canFam3.chr30             C 0 I 6192
e micMur3.chr3                 940961 898 - 119751181 I
e proCoq1.NW_012149419v1       663975 379 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              64878 4010 -   2180720 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=113424.000000
s hg38.chr15_KI270850v1_alt    206216 19 +    430880 TTGAAG---------TGATTATAAAGCA
s panTro5.chr15              18015898 19 -  83230942 ttGAAG---------TGATTATAAAGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17242172 19 -  99763055 TTGAAG---------TGATTATAAAGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       304854 19 +    378907 TTGAAG---------TGATTATAAAGCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102160375 19 + 121039945 TTGAAG---------TGATTATAAAGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60365805 19 + 169600520 TTACAG---------TGATTAAAAATCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107363012 19 - 171882078 TTAAAG---------TGATTATAAAGCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1821913 19 -   1987038 TTACAG---------TGATTAAAAATCA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       317144 19 -   1458659 TTAAAG---------TGATTATAAAGCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7500284 19 -   9444221 ttacAG---------TGATTATAAGTCA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18030168 19 + 132174527 ttacAG---------TGATTTAAAATCA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             527537 19 -   3282555 ttacAG---------TGATTTCAAATCA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       312302 19 -   1024465 ttacAG---------TGATTTAAAATCA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       757497 28 -   3745603 ttACAGTTTAAAATTTGATTTAAAATCA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6780379 15 -  36342412 ----AA---------TAACTATAAATCA
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 940961 898 - 119751181 I
e proCoq1.NW_012149419v1       663975 379 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              64878 4010 -   2180720 I
e canFam3.chr30                 65375 6192 -  40214260 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=20010.000000
s hg38.chr15_KI270850v1_alt    206235 2 +    430880 AA
s panTro5.chr15              18015917 2 -  83230942 AA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17242191 2 -  99763055 AA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       304873 2 +    378907 AA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102160394 2 + 121039945 AA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60365824 2 + 169600520 AA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107363031 2 - 171882078 AA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1821932 2 -   1987038 AA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       317163 2 -   1458659 AA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7500303 2 -   9444221 AA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18030187 2 + 132174527 AA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             527556 2 -   3282555 AA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       312321 2 -   1024465 AA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       757525 2 -   3745603 AA
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       664354 2 -   2566024 AA
i proCoq1.NW_012149419v1    I 379 C 0
s otoGar3.GL873530            6780394 2 -  36342412 GA
i otoGar3.GL873530          C 0 C 0
e micMur3.chr3                 940961 898 - 119751181 I
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              64878 4010 -   2180720 I
e canFam3.chr30                 65375 6192 -  40214260 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=469224.000000
s hg38.chr15_KI270850v1_alt    206237 46 +    430880 TGCCTGAAGAGGCCAAGC-TTAGGATAGTGTTTGCTGTACAGCTTTG
s panTro5.chr15              18015919 46 -  83230942 TGCCTGAAGAGGCAAAGC-TTAGGATAGTGTTTGCTGTACAGCTTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17242193 46 -  99763055 TGCCTGAAGAGGCAAAGC-TTAGGATAGTGTTTGCTGTACAGCTTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       304875 46 +    378907 TGTCTGAAGAGGCCAAGC-TTAGGATAGTGTTTGCTGTACAGCTTTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102160396 46 + 121039945 TGCCTGAAGAGGCTAAGC-TTAGGATATTGTTTGCTGTACAGCTTTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60365826 46 + 169600520 TGCCTGAAGAGGCTAAGC-TTACCATAGTGTTTGCTGTACAACTTTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107363033 46 - 171882078 TGCCTGAAGAGGCTAAGC-TTAGGAGAGTGCTTGCTGTGCAACTTTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1821934 46 -   1987038 TGCCTGAAGAGGCTAAGC-TTACCATAGTGTTTGCTGTACAACTTTG
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       317165 46 -   1458659 TGCCTGAAGAGGCTAAGC-TTAGGAGAGTGTTTGCTGTACAACTTTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7500305 46 -   9444221 TGCCTGAAGAGGATAAGC-TTAGGACAGTGTTTGCTGTACAACTTTG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18030189 45 + 132174527 -TCCTGAAGAGGCTAAGC-TTAGGATAGTGTTTGCTGTACAACTTTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             527558 46 -   3282555 TTCCTGAAGAGGCTAAGC-TTAGGATAGTGTTTGCTGTACGACTTTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       312323 46 -   1024465 TTCCTGAAGAGGCTAAGC-TTAGGATAGTGTTTGCTGTACAACTTTG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       757527 46 -   3745603 TTCCTGAAGAGGCTAAGC-TTAGGATAGTGTTTGCTGTACAACTTTG
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       664356 46 -   2566024 TGCTTAAAGAGGCCGAGC-TTAGGATAGCACTTGCTACACAACTTTG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6780396 43 -  36342412 TGACTAAAGAGGCTGAAC-TTAGGGTAG---TTGCTTTACAACTTAG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 71567 47 -  40214260 TGCCTAAAGAGGCTAAGCTTTAGGATAGTGTTTGCTATGCAACTTTG
i canFam3.chr30             I 6192 I 527
e micMur3.chr3                 940961 898 - 119751181 I
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              64878 4010 -   2180720 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=71794.000000
s hg38.chr15_KI270850v1_alt    206283 11 +    430880 ACAACTGAATT
s panTro5.chr15              18015965 11 -  83230942 ATAACTGAATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17242239 10 -  99763055 ATAACTGAA-T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       304921 10 +    378907 ACAACTGAA-T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102160442 11 + 121039945 ACAACTGAATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60365872 11 + 169600520 ACAACTGAGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107363079 11 - 171882078 ACAACTGATTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1821980 11 -   1987038 ACAACTGAGCT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       317211 11 -   1458659 ACAACTGATTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7500351 11 -   9444221 ACAACTCAACT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18030234 11 + 132174527 GTACCTGAACT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             527604 11 -   3282555 GCACCTGAACT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       312369 11 -   1024465 GCACCTGAACT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       757573 11 -   3745603 GCACCTGAACT
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       664402 11 -   2566024 GCAACTGAAAT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6780439 11 -  36342412 CCAACTGAAAT
i otoGar3.GL873530          C 0 I 110
s canFam3.chr30                 72141 11 -  40214260 ACAACTGAGGT
i canFam3.chr30             I 527 C 0
e micMur3.chr3                 940961 898 - 119751181 I
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              64878 4010 -   2180720 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=51274.000000
s hg38.chr15_KI270850v1_alt    206294 5 +    430880 TTTTT
s panTro5.chr15              18015976 5 -  83230942 TTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17242249 5 -  99763055 TTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       304931 5 +    378907 TTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102160453 5 + 121039945 TTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60365883 5 + 169600520 TTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107363090 5 - 171882078 TTTTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1821991 5 -   1987038 TTTTT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       317222 5 -   1458659 TTTTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7500362 5 -   9444221 TTTTT
i colAng1.NW_012112253v1    C 0 I 1
s calJac3.chr10              18030245 5 + 132174527 TGTTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             527615 5 -   3282555 TGTTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       312380 5 -   1024465 TGTTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       757584 5 -   3745603 TGTTT
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       664413 5 -   2566024 TTTTT
i proCoq1.NW_012149419v1    C 0 I 104
s otoGar3.GL873530            6780560 5 -  36342412 TTTTT
i otoGar3.GL873530          I 110 C 0
s canFam3.chr30                 72152 5 -  40214260 TTTTT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 940961 898 - 119751181 I
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              64878 4010 -   2180720 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=847370.000000
s hg38.chr15_KI270850v1_alt    206299 113 +    430880 -TAAGTTGAAAA-----TATTACTGTGTCTGTATATGTGGCATATTATCCTTAGATGACCGTTACTTCAATTATTAG-AATTTTTT---------------TCCCTAGTATTCTT--G----AACTGTCTCAATATTCAGT
s panTro5.chr15              18015981 113 -  83230942 -TAAGTTGAAAA-----TATTACTGTGTCTGTATATGTGGCATATTATCCTTAGATGACCCTTACTTCAATTATTAG-AATTTTTT---------------TCCCTAGTATTCTT--G----AACTGTCTCAATATTCAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17242254 113 -  99763055 -TAAGTTGAAAA-----TATTACTGTGTCTGTATATGTGGCATATTATCCTTAGATGACCCTTACTTCAATTATTAG-AATTTTTT---------------TCCCTAGTATTCTT--G----AACTGTCTCAATATTCAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       304936 113 +    378907 -TCAGTTGAAAA-----TATTACTGTGTCTGTATATGTGGCATATTATCCTTAGATGACCGTTACTTCAGTTATTAG-AATTTTTT---------------TCCCTAGTATTCTT--G----AACTGTCTCAATATTCAGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102160458 113 + 121039945 -TAAGTTGAAAA-----TGTTACTGTGTCTGTATCTGTGGCATATTATCCTTAGATGACCCTTACTTCGGTTATTAG-AATTTTTT---------------TGCCTAGTATTCTT--G----AACTGTCTCAATATTGAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60365888 113 + 169600520 -AAACTTGAAAA-----TATTACTGTGTCTGTATATGTGGCATATTATACTTAGATGACCCTTACTTTGATTATTAA-AATTTTTT---------------TCCCTAGTATTCTT--G----AACTGTCTCAATATTTAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107363095 113 - 171882078 -TAAGTTGAAAA-----TATTACTGTGTCTGTATATGTGACATATTATCCTTAGATGACCCTTGCTTCAATTATTCA-AATTTTTT---------------CCCCTAGTATTCTT--G----AACTGTCTCAATATTCAGT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1821996 113 -   1987038 -AAACTTGAAAA-----TATTACTGTGTCTGTATATGTGGCATATTATACTTAGATGACCCTTACTTCGATTATTAA-AATTTTTT---------------TCCCTAGCATTCTT--G----AACTGTCTCAATATTTAGC
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       317227 112 -   1458659 --AAGTTGAAAA-----TATTACTGTGTCTGTATATGTGACATATTATCCTGAGATGACCCTTGCTTCAATTATTCA-AATTTTTT---------------TCCCTAGTATTCTT--G----AACTGTCTCAATATTCAGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7500368 113 -   9444221 -AAAGTTGAAAA-----TGTTACTGTGTCTGCATATGTAGCATATTAT-CTTAGATGACCCTTGCTTCAGTTATTAAGAATTTTTT---------------CCCCTAGTATTCTT--G----AACTGTCTCGGTATTCAGC
i colAng1.NW_012112253v1    I 1 C 0
s calJac3.chr10              18030250 117 + 132174527 -AAAGTTGAAAATATTATATTACTGTGTCCATATATGTGGCATATTATCCTTAGGTGACCCTTACTTAGATTATTAA-TATTTTAT----------------GCCTCGTATACTT--G----AACTGTCTCAGTATTCAGC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             527620 117 -   3282555 -AAAGTTGAAAATTTTCTATTACTGTGTCCATATATGTGGCATATTATCCTTAGATGACCCTTACTTAGATTATTAA-TATTTTTT----------------ACCTAGTATACTT--G----AACTGTCTCAGTATTCAGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       312385 119 -   1024465 -AAAGTTGAAAATATTATATTACTGTGTCCATATATGTGGCATATTATCCTTAGATGACCCTTACTTAGATTATTAA-TATTTTTT----------------CCCTAGTATACTTCGG----AACTGTCTCAGTATTCAGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       757589 117 -   3745603 -AAAGTTGAAAATATTATATTACTGTGTCCATATATGTGGCATATTATCCTTAGATGACCCTTACTTAGATTATTAA-TATTTTTT----------------CCTAAGTATACTT--G----AACTGTCTCAGTATTCAGC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6780565 105 -  36342412 -TAAGTTAAAAA-----TATTA---TGTTCGTGTGTGTG------------------------ACTTAGATTGTTAA-TGTTTTTTAATTTTTTTTTTTTCTGCCTAGTGTCCAT--GAACTAACTGTTTCACTATTCACT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 72157 112 -  40214260 TAAAATTGAAAC-----TATTACCATGCCC--ATATGTGGTATATTATCTTTAAGTGACCCTTA----GATTATTAT-TATTTTTC-----------CTTTTTTCTAATATTCTT--G----AATTGTCTCAATATTCAGC
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 940961 898 - 119751181 I
e proCoq1.NW_012149419v1       664418 104 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              64878 4010 -   2180720 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=539313.000000
s hg38.chr15_KI270850v1_alt    206412 45 +    430880 AGGAA---CCC----TTTGGAGACAAAGAGCAGTAAGAATTTGGAACACATA
s panTro5.chr15              18016094 48 -  83230942 AGGAACCCCCC----TTTGGAGACAAAGAGCAGTAAGAATTTGGAACACATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17242367 48 -  99763055 AGGAACCCCCC----TTTGGAGACAAAGAGCAGTAAGAATTTGGAACACATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       305049 45 +    378907 AGGAA---CCC----TTTGGAGACAAAGAGCAGTAAGAATTTGGAACACATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102160571 48 + 121039945 AGGAACCCCCC----TTTGGAGACAAAGAGCAGTAAGAATTTGGGACACATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60366001 45 + 169600520 AGGAA---CCC----TTTGGAGACAAAGAGCAGTAAGAATTTGGAACACATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107363208 45 - 171882078 AGGAT---CCC----TTTGGAGACAAAGAGCAGTAAGAATTTGGAACACATA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1822109 45 -   1987038 AGGAA---CCC----TTTGGAGACAAAGAGCCGTAAGAATTTGGAACACATA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       317339 45 -   1458659 AGGAT---CCC----TTTGGAGACAAAGAGCAGTAAGAATTTGGAACACATA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7500481 45 -   9444221 AGGAA---CCC----TTTAGGGACAAAGAGCAGTAAGAATTTGGAACACATA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18030367 45 + 132174527 AGGAA---CTC----TTTGGAGGCAAAGAGCAGTAAGAATTTGAAACACATA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             527737 45 -   3282555 AGGAA---CTC----TTTGGAGGCAAAGAGCAGTAAGAATTTGAAACACATA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       312504 45 -   1024465 AGGAA---CTC----TTTGGAGGCAAAGAGCAGTAAGAATTTGAAACACATA
i cebCap1.NW_016107979v1    C 0 I 4
s aotNan1.NW_018511953v1       757706 45 -   3745603 AGGAA---CTC----TTTGGAGGCAAAGAGCAGTAAGAATTTGAAACACATA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 941859 45 - 119751181 AGGAA---CTC----TTTGGAGGCAAAGAGCAATAAGAGTTTGGAACACATA
i micMur3.chr3              I 898 C 0
s proCoq1.NW_012149419v1       664522 45 -   2566024 AGGAA---CTC----TTTGGAGGCAAAGAGCAATAAGAGTTTGGAACACGTA
i proCoq1.NW_012149419v1    I 104 C 0
s otoGar3.GL873530            6780670 49 -  36342412 AGGAA---CTCTTTGTTTGGAGGCAAAGAGCCATAAGAATTTGTAACACACA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 72269 45 -  40214260 AGGAA---CTA----TTTGAAGGCAAAGAACAATAAGTATTTGGAGCATATA
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              64878 4010 -   2180720 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=45631.000000
s hg38.chr15_KI270850v1_alt    206457 4 +    430880 TTGA
s panTro5.chr15              18016142 4 -  83230942 TTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17242415 4 -  99763055 TTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       305094 4 +    378907 TTGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102160619 4 + 121039945 TTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60366046 4 + 169600520 TTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107363253 4 - 171882078 TTGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1822154 4 -   1987038 TTGA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       317384 4 -   1458659 TTGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7500526 4 -   9444221 TTGA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18030412 4 + 132174527 CTGA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             527782 4 -   3282555 CTGA
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       757751 4 -   3745603 CTGA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 941904 4 - 119751181 TTGA
i micMur3.chr3              C 0 I 316
s proCoq1.NW_012149419v1       664567 4 -   2566024 TTGA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6780719 4 -  36342412 TTGA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 72314 4 -  40214260 TTGA
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              64878 4010 -   2180720 I
e cebCap1.NW_016107979v1       312549 4 -   1024465 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=40057.000000
s hg38.chr15_KI270850v1_alt    206461 13 +    430880 CGAAATGAATGTC
s panTro5.chr15              18016146 13 -  83230942 CAAAATGAATGTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17242419 13 -  99763055 CAAAATGAATGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       305098 13 +    378907 CGAAATGAATGTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102160623 13 + 121039945 CAAAATGAATGTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60366050 13 + 169600520 CAAAATGAACGTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107363257 13 - 171882078 CAAAATGAATGTA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1822158 13 -   1987038 CAAAATGAACGTA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       317388 13 -   1458659 CAAAATGAATGTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7500530 13 -   9444221 CAAAATGAATGTA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18030416  1 + 132174527 C------------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             527786  1 -   3282555 C------------
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1       757755  4 -   3745603 CAAA---------
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       664571 11 -   2566024 TAAAATGAATA--
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6780723 13 -  36342412 TAAAATGAATGTA
i otoGar3.GL873530          C 0 I 326
s canFam3.chr30                 72318 13 -  40214260 TAGAGTGAATACA
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 941908 316 - 119751181 I
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              64878 4010 -   2180720 I
e cebCap1.NW_016107979v1       312549  4 -   1024465 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=41914.000000
s hg38.chr15_KI270850v1_alt    206474 7 +    430880 ATTTAAT
s panTro5.chr15              18016159 7 -  83230942 ATTTAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17242432 7 -  99763055 ATTTAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       305111 7 +    378907 ATTTAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102160636 7 + 121039945 ATTTAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60366063 7 + 169600520 ATTTAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107363270 7 - 171882078 ATTTAAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1822171 7 -   1987038 ATTTAAT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       317401 7 -   1458659 ATTTAAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7500543 7 -   9444221 ATTTAGT
i colAng1.NW_012112253v1    C 0 C 0
s proCoq1.NW_012149419v1       664582 7 -   2566024 ATTCAAT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6781062 7 -  36342412 ATTCAGT
i otoGar3.GL873530          I 326 C 0
s canFam3.chr30                 72331 7 -  40214260 ACTCAAT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 941908 316 - 119751181 I
e aotNan1.NW_018511953v1       757759 0 -   3745603 C
e mm10.chr9                  55193894 813 + 124595110 I
e calJac3.chr10              18030417 0 + 132174527 C
e dasNov3.JH569975              64878 4010 -   2180720 I
e cebCap1.NW_016107979v1       312549 4 -   1024465 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I
e saiBol1.JH378276             527787 0 -   3282555 C

a score=1654360.000000
s hg38.chr15_KI270850v1_alt    206481 192 +    430880 ACAGTAGTAGAGTCGA-----CCA---CTTTTA-GGTGTCAGTGCTGCTGGAAGTGTATATTAAGGAAAAGTTTACTTATCTT-ACTTATGTAGTGAAGGTACTAGAACTACTTCTGTCTTCTGTTTAGAT-TTCAACAAACATTTG-CATAGGTATTATGCGGTTGTACAAATGTACTGTCTTTTGACCTGAAAATGCAAAAA
s panTro5.chr15              18016166 192 -  83230942 ACAGTAGTAGAGTCGA-----CCA---CTTTTA-GGCGTCAACGCTGCTGAAAGTGTATATTAAGGAAAAGTTTACTTATCTT-ACTTATCTGGTGAAGGTACTAGAACTACTTCTGTCTTCTGTTTAGAT-TTCAACAAACATTTG-CATAGGTATTATGCGGTTGTACAAATGTACTGTCTTTTGACCTGAAAATGCAAAAA
i panTro5.chr15             C 0 I 4
s panPan2.chr15              17242439 192 -  99763055 ACAGTAGTAGAGTCGA-----CCA---CTTTTA-GGCGTCAACGCTGCTGAAAGTGTATATTAAGGAAAAGTTTACTTATCTT-ACTTATCTGGTGAAGGTACTAGAACTACTTCTGTCTTCTGTTTAGAT-TTCAACAAACATTTG-CATAGGTATTATGCGGTTGTACAAATGTACTGTCTTTTGACCTGAAAATGCAAAAA
i panPan2.chr15             C 0 I 4
s gorGor5.CYUI01015946v1       305118 192 +    378907 ACAGTAGTAGAGTCTA-----CCA---CTTTTA-GGTGTCAGTGCTGCTGGAAGTGTATATTAAGGAAAAGTTTACTTATCTT-ACTTATCTAGTGAAGGTACTAGAACTACTTCTGTCTTCTGTTTAGAT-TTCAACAAACATTTG-CATAGGTATTACGCGGTTGTACAAATGTACTGTCTTTTGACCTGAAAATGCAAAAA
i gorGor5.CYUI01015946v1    C 0 I 4
s nomLeu3.chr6              102160643 192 + 121039945 ACAGTAGTAGAGTCGA-----CCA---CTTTTA-GGTGTCAACGCTGCTGAAAGTGTATATTAAGGAAAAGTTTACTTATCTT-ACTTACCTAGTGAAGGTACTAGAACTACTTCTGTCTTCTGTTTAGAT-TTCAACAAACATTTG-CATAGGTATTATGTGGTTGTACAAACGTACTGTCTTTTGACCTGAAAATGCAAAAA
i nomLeu3.chr6              C 0 I 4
s rheMac8.chr7               60366070 190 + 169600520 ACAGTAGTAGAGTCAA-----CCA---CTTTTA-GGTGTTGATGCTGCTCATAGTGTATATTAAGGAAAAGTTTACTTATCTT-AGT--TTTTGTGGAAGTACTAGAACTACTTCTGTCTTGTGTTTAGAT-TTCAACAAACATTTG-CATAGGTATTATGTGGTTGTACAAATGTACTTTCTTTTGACCTGAAAATGCAAAAA
i rheMac8.chr7              C 0 I 4
s macFas5.chr7              107363277 190 - 171882078 ACAGTAGTAGAGTCAA-----CCA---CTTTTA-GGTGTCGATGCTGCTGGAAGTATGTATTAAGGAAAAGTTTACTTATCTT-ACT--TTTTGTGAAGGTACTAGAACTACTTCTGTCTTCTGTTTAGAT-TTCAACAAACATTTG-CATAGCTATTATGTGGTTGTACAAATGTACTTTCTTTTGACCTGAAAATGCAAAAT
i macFas5.chr7              C 0 I 4
s cerAty1.NW_012002657v1      1822178 190 -   1987038 ACAGTAGTAGAGTCAA-----CCA---CTTTTA-GGTGTTGATGCTGCTGATAGTGTATATTAAGGAAAAGTTTACTTATCTT-AGT--TTTTGTGGAAGTACTAGAACTACTTCTGTCTTGTGTTTAGAT-TTCAACAAACATTTG-CATAGGTATTATGTGGTTGTACAAATGTACTTTCCTTTGACCTGAAAATGCAAAAA
i cerAty1.NW_012002657v1    C 0 I 4
s manLeu1.NW_012105520v1       317408 190 -   1458659 ACAGTAGTAGAGTCAA-----CCA---CTTTTA-GGTGTCGATGCTGCTGAAAGTATGTATTAAGGAAGAGTTTACTTATCTT-ACT--TTTTGTGAAGGTACTAGAACTACTTCTGTCTTCTGTTTAGAT-TTCAACAAACATTTG-CATACCTATTATGTGGTTGTACAAATGTACTTTCTTTTGACCTGAAAATGCAAAAA
i manLeu1.NW_012105520v1    C 0 I 4
s colAng1.NW_012112253v1      7500550 189 -   9444221 ACAGTAGTAGAGTCGA-----CCA---CTTTTA-GGTGTTGATGCTGCTGAAAGTGTATATTAAGGAAAAGTTTACTTACCTT-AC---TTTTGGGTAAGTGCTAGAACTACTTCTGTTTTGTGTTTAGAT-TTCAACAAATCTTTG-CATAAGTATTATGTGGTTGTACAAATATACTTTCTTTTGACCTGAAAATACAAAAA
i colAng1.NW_012112253v1    C 0 I 4
s calJac3.chr10              18030417 184 + 132174527 --AGAAGTAGAATTGA-----CAA---CTTTTA-GGTAGAAATGCTGCTGATAGTGTATATTAAGGAAACGTTTACTTATCT-------TTTTGTGTAGGTACTAGAACTACTTCTGTCTTGTGTTTAGAC-TTCAAC-AATATTTGTTGTAGATATTATGTACTTGTACAAATGCACTTTCTTTTGTCCTGAAAACCCAAAAA
i calJac3.chr10             C 0 I 4
s saiBol1.JH378276             527787 181 -   3282555 ----AAGTAGAATTGA-----CAA---CTTTTA-GGTAGAAATGCTGCTGATAGTGTATATTAAGGAAACGTTTACTTATCT-------TTTTGTATAGGTACTAGAACTACTTCTGTCTTGTGTTTAGAC-TTCAAC-AGTATTTG-TGTAGGTATTATGTACTTGTACAAATGCATTTTATTTTGTCCTAAAAACCCAAAAA
i saiBol1.JH378276          C 0 I 4
s cebCap1.NW_016107979v1       312553 185 -   1024465 ACAGAAGTAGAATTGA-----CAA---CTTTTA-GGTAGAAATGCTGCCGATAGTGTATATTAAGGAAACATTTACTCATCT-------TTTTGTGTAGGTACTAGAACTACTTCTGTCTTGTGTTTAGAC-TTCAAC-AGTATTTG-TGTAGGTATTATGTACTTGTACAAATGCACTTTCTTTTGTCCTGAAAACTCAAAAA
i cebCap1.NW_016107979v1    I 4 C 0
s aotNan1.NW_018511953v1       757759 180 -   3745603 -----AGTAGAATTGA-----CAA---TTTTTAGGGTAGAAATGCTGCTGATAGTGTATATTAAGGAAACGTTTACTTATC--------TTTTGTGTAGGTACTAGAACTATTTCTGTCTTGTGTTTAGAC-TTCAAC-AATATTTG-TGTAGGTATTATGTACTTGTACAAATGCACTTTCTTTTGTCCTGAAAACCCGAAAA
i aotNan1.NW_018511953v1    C 0 I 4
s proCoq1.NW_012149419v1       664589 194 -   2566024 ACAGAAATAGAATCAC-----CCACTTCTTTTA-GGTGTAAATGCTGTTGATAGTGTATATTAAGGAAATGTTTACTTATCTC-ACT--TTTTATGTAGGTACTAGAACTACTTCTGTCTTGTGTTTAGACATCCAACAAACATTTG-TGTAGGTATCATGTGCTTGTACAAATGCACTTTCTTTTGACTTGGAAATGCAAAAA
i proCoq1.NW_012149419v1    C 0 I 41
s otoGar3.GL873530            6781069 195 -  36342412 GCAGAACTAGAACCAA-----CAGTTTCTTTTA-GGTGTAAGTGCTGGTGATAGCGTATATTAAGGAAAAGTTTACTTATCTTAACT--TTTTATGTGGGTACTAGAACTACTTCTATCTTGTGTTTAGACATCCAACAAATATTTG-TGTAGGTATCATGTGCTTATACACATGCACTTTCTTTTGACATGCAAATGCAAACA
i otoGar3.GL873530          C 0 I 4
s canFam3.chr30                 72338 188 -  40214260 GTGGAAGTAGAATCAATCTCTCCT---TTTATA-GGTGTAAATGCTACTAATAGTATGTGTTAAGGAAAAGTTTGCTTTCCTC-AC---TTTTATGTAGGTTCTAGAGCTGTTTC----TTGTGTTTAGAGATCCAACAAACATTTG-TGTAG---TTAAGGCCTTGTAGAAAATTAGTTTCTTTTGGCCCGTGAATACAAAAT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 941908 316 - 119751181 I
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              64878 4010 -   2180720 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=100118.000000
s hg38.chr15_KI270850v1_alt    206673 15 +    430880 ----CTTTCT------------------------TCCTACTTT
s panTro5.chr15              18016362 15 -  83230942 ----CTTTCT------------------------TCCCACTTT
i panTro5.chr15             I 4 C 0
s panPan2.chr15              17242635 15 -  99763055 ----CTTTCT------------------------TCCCACTTT
i panPan2.chr15             I 4 C 0
s gorGor5.CYUI01015946v1       305314 15 +    378907 ----CTTTCT------------------------TCCCACTTT
i gorGor5.CYUI01015946v1    I 4 C 0
s nomLeu3.chr6              102160839 15 + 121039945 ----CTTTCT------------------------TCCCACTTT
i nomLeu3.chr6              I 4 C 0
s rheMac8.chr7               60366264 15 + 169600520 ----CTTTCT------------------------TCCCACTTT
i rheMac8.chr7              I 4 C 0
s macFas5.chr7              107363471 15 - 171882078 ----TTTTCT------------------------TCCCACTAT
i macFas5.chr7              I 4 C 0
s cerAty1.NW_012002657v1      1822372 15 -   1987038 ----CTTTCT------------------------TCCCACTTT
i cerAty1.NW_012002657v1    I 4 C 0
s manLeu1.NW_012105520v1       317602 15 -   1458659 ----TTTTCT------------------------TCCCACTAT
i manLeu1.NW_012105520v1    I 4 C 0
s colAng1.NW_012112253v1      7500743 15 -   9444221 ----ATTTCT------------------------TCCCACTTT
i colAng1.NW_012112253v1    I 4 C 0
s calJac3.chr10              18030605 15 + 132174527 ----CTTTCT------------------------TCCCATCTC
i calJac3.chr10             I 4 C 0
s saiBol1.JH378276             527972 15 -   3282555 ----CTTTCT------------------------TCCTGACTC
i saiBol1.JH378276          I 4 C 0
s cebCap1.NW_016107979v1       312738 15 -   1024465 ----CTTTCT------------------------TCCCATCTC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       757943 15 -   3745603 ----CTTTCT------------------------TCCCATCTC
i aotNan1.NW_018511953v1    I 4 C 0
s otoGar3.GL873530            6781268 39 -  36342412 ----ctttctctctcttttttttttttaagatagtctcacttt
i otoGar3.GL873530          I 4 I 268
s canFam3.chr30                 72526 16 -  40214260 CTTGCCTTCT------------------------TCCCAC---
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 941908 316 - 119751181 I
e proCoq1.NW_012149419v1       664783 41 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              64878 4010 -   2180720 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=130721.000000
s hg38.chr15_KI270850v1_alt    206688 20 +    430880 CTG--AGA----CTCTGCAACCTTAA-
s panTro5.chr15              18016377 20 -  83230942 CTG--AGA----CTCTGCAACCTTAA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17242650 20 -  99763055 CTG--AGA----CTCTGCAACCTTAA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       305329 20 +    378907 CTG--AGA----CTCTGCAACCTTAA-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102160854 20 + 121039945 CTG--AGA----CTCTGCAACCTTAA-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60366279 20 + 169600520 CTG--AGA----CTCTGCAACTTTAA-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107363486 20 - 171882078 CTG--AGA----CTCTGCAACTTTAA-
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1822387 20 -   1987038 CTG--AGA----CTCTGCAACTTTAA-
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       317617 20 -   1458659 CTG--AGA----CTCTGCAACTTTAA-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7500758 20 -   9444221 GTG--AGA----CTCTGCAACCGTAA-
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18030620 20 + 132174527 CTG--AGA----CTCTGCACCCCCAA-
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             527987 20 -   3282555 CTG--AGA----CTCTGCACTCCCAA-
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       312753 24 -   1024465 CTG--AGACTCTCTCTGCACTCCCAA-
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       757958 18 -   3745603 CTG--AGA------CTGCACCCCCAA-
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6781575 20 -  36342412 CTG--AGA----CTATATTCCTCTGT-
i otoGar3.GL873530          I 268 C 0
s canFam3.chr30                 72542 23 -  40214260 CTGAAAGA----CTCTCCATGCCCAGA
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 941908 316 - 119751181 I
e proCoq1.NW_012149419v1       664783 41 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              64878 4010 -   2180720 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=552114.000000
s hg38.chr15_KI270850v1_alt    206708 66 +    430880 AGGAAGAGTGGGGTACTTTAAAGGAAAGGTGGTGTTGGTTGGATAATGGGTGAC--AATGTCTGCCAT
s panTro5.chr15              18016397 66 -  83230942 AGGAAGAGTGGGGTACTTTAAAGGAAAGGTGGTGATGGTTGGATAATGGGTGAC--AATGTCTACAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17242670 66 -  99763055 AGGAAGAGTGGGGTACTTTAAAGGAAAGGTGGTGATGGTTGGATAATGGGTGAC--AATGTCTACAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       305349 66 +    378907 AGGAAGAGTGGTGTACTTTAAAGGAAAGGTGGTGATGGTTGGATAATGGGTAAC--AATGTCTACAGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102160874 63 + 121039945 AGGAAGAGTGGGGTACTTTAAAGGAAA---GGTGATGGTTGGATAATGGGTAAC--AGTGTCTACCGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60366299 66 + 169600520 AGGAAGAGTGGGGTTCTTTAAAGGAAAGGTGGTGATGGTTGGATAATGGGTAAC--AATGTCTACCGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107363506 66 - 171882078 AGGAAGAGTGGGGTACTTTAAAGGAAAGGTGGTGATGGTTGGATAAGGGGTAAC--AATGTCTACCAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1822407 66 -   1987038 AGGAAGAGTGGGGTTCTTTAAAGGAAAGGTGGTGATGGTTGGATAATGGGTAAC--AATGTCTACAGT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       317637 66 -   1458659 AGGAAGAGTGGGGTACTTTAAAGGAAAGGTGGTGATGGTTGGATAATGGGTAAC--AATGTCTACCGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7500778 66 -   9444221 AGGAAGAGTGGGGTACTTTAAAGGAAAGGTGGTGGTGGTTGGGTAATGGGTAAC--AATGTCTACTGT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18030640 65 + 132174527 AGGAAGAGT-GGGTACCTTAAAGGAAAGGTGGTGATGGTTTGATAATGAGTAAC--AATGTCTGCTGT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             528007 57 -   3282555 AGGAAGAGTGGGGTACCTTAAAGGAAAAGTGGTGATGGTTTGATAATGGGTA-----------GCTGT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       312777 66 -   1024465 AGGAAGAGTGGGGTACCTTTAAGGAAAGGTGGTGATGGTTTGATAATGGGTAGC--AATGTCTACTGT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       757976 66 -   3745603 AGGAAGAGTGGGGTACCTTAAAGGAAAGGTGGTGATGGTTTGATAATGGGTAAC--AGTGTCTGCTGT
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       664824 64 -   2566024 AGGAAGAGTGGGGTAC-TTAAAGGAACAGTGG---TAGTTGGATAATGGGTAACTTAGTGTGTACTGG
i proCoq1.NW_012149419v1    I 41 C 0
s otoGar3.GL873530            6781595 64 -  36342412 AGGAGGGGTGGAGTAC-TTAAAGGAACAGTGG---TGGTTGGATAATGGGTTACTTGGGGTATACTAC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 72565 57 -  40214260 ATGAAGAGT-GGGTGC-TAAAAAGAAAGGTGG-------CAGGTAATTTGTAAC--TTGGGCTGGTCT
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 941908 316 - 119751181 I
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              64878 4010 -   2180720 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=2106560.000000
s hg38.chr15_KI270850v1_alt    206774 197 +    430880 ---ATACTTCCTTTTCCCAAAACA--------AGTTCCTGTCTACCATCAGCATCTCCAAAATTTGAAGATCAAGTGTGGTGTTAACTCATTAACTAAATGACTAGACTTTGAGCAGTT----GTGGAACC-AAAATCTGAGTGAGTGCCTGGATGTTCTAATTCTGTTAAATCAATGAGTG------------CACATTATATACA--ATACTCTCTTAGCCCAGT
s panTro5.chr15              18016463 196 -  83230942 ---ATACTTCCTTTTCCCAAAACA--------AGTTCCTGTCTACCATCAGCATCTCCAAAATTTGAAGATCAAGTGTGGTGTTAACTCATTAACT-TATGACTAGACTTTGAGCAGTT----GTGGAACC-AAAATCTGAGTGAGTGCCTGGATGTTCTAATTCTGTTAAATCAGTGAGTG------------CACATTATATACA--ATACTCTCTTAGCCCAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17242736 196 -  99763055 ---ATACTTCCTTTTCCCAAAACA--------AGTTCCTGTCTACCATCAGCATCTCCAAAATTTGAAGATCAAGTGTGGTGTTAACTCATTAACT-AATGACTAGACTTTGAGCAGTT----GTGGAACC-AAAATCTGAGTGAGTGCCTGGATGTTCTAATTCTGTTAAATCAGTGAGTG------------CACATTATATACA--ATACTCTCTTAGCCCAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       305415 197 +    378907 ---ATACTTCCTTTTCCCAAAACA--------AGTTCCTGTCTACCATCAGCATCTCCAAAATTTGAAGATCAAGTGTGGTGTTAACTCATTAACTAAATGACTAGACTTTGAGCAGTT----GTGGAACC-AAAATCTGAGTGAGTGCCTGGATGTTCTAATTCTGTTAAATCAGTGAGTG------------CACATTATATACA--ATACTCTCTTAGCCCAGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102160937 196 + 121039945 ---ATACTTCCTTTTCCCAAAACA--------AGTTCCTGTCTACCATCAGCATCTCCAAAATTTGAAGATCAAGTGTGGTGTTAACTCATTAACT-AATGACTAGACTTTGAGCAGTT----GTGGAACC-AAAATCTAAGTGAGTGCCTGGATGTTCTAATTCTGTTAAATCAATGAGTG------------CAGATTATATACA--ATACTCTCTTAGCCCAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60366365 196 + 169600520 ---ATGCTTTCTTTTCTCAAAACA--------AGTTCCCGTCTACCATCAGCATTTCCAAAATTTGAAGATCAAGTGTGGTATTAACTCATTAACT-AATGACTAGACTTTGAGCAGTT----GTGGAACC-AGAATCTCAGTGAGTGCCTGGATGTTCCAATTCTGTTAAATCAATGAGCG------------CACATTATATACA--ATACTCTCTTAGCCCAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107363572 196 - 171882078 ---ATGCTTCCTTTTGCCAAAACA--------AGTTCCTGTCTACCATCAGCATTTCCAAAATTTGAAGATTAAGTGTTGTGTTAACTCATTAACT-AATGAATAGACTTTGAGCAGTT----GTGGAATC-AAAATTTCAGTGAGTACCTGGATGTTCTAATTCTGTTAAATCAATGAGTA------------CACATTATGTGCA--ATATCCTCTTAGCCCAGT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1822473 196 -   1987038 ---ATGCTTTCTTTTCTCAAAACA--------AGTTCCCATCTACCATCAGCATTTCCAAAATTTGAAGATCAAGTGTGGTATTAACTCATTAACT-AATGACTAGACTTTGAGCAGTT----GTGGAACC-AGAATCTCAGTGAGTGCCTGGATGTTCCAATTCTGTTAAATCAATGAGCG------------CACATTATATACA--ATACTCTCTTAGCCCAGT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       317703 196 -   1458659 ---ATGCTTCCTTTTGCCAAAACA--------AGTTCCTGTCTACCATCAGCATTTCCAAAATTTGAAGATTAAGTGTTGTGTTAACTCATTAACT-AATGAATAGACTTGGAGCAGTT----GTGGAACC-AGAATCTCAGTGAGTACCTGGATGTTCTAATTCTGTTAAATCAATGAGTA------------CACATTATGTGCA--ATATCCTCTTAGCCCAGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7500844 196 -   9444221 ---ATACTTCCTTTTCCTAAAACA--------AGTCCCTGTCTACCGTCAGCATTTCCAAAATTTGAAGATCAAGTGTGGTGTTAACTCATTAACT-AATGACTAGACTTTGAGCGGTT----GTGGAAGC-AAAATCTCAGTGAGTGCCTGGATGTTCTAATTCTGTTAAATCAGTGAGTG------------CATATTCTATACA--ATACTCTGTTAGCCTAGT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18030705 196 + 132174527 ---ATACTTTCTTTTCCCAAAACA--------AGTTCCTGTCTACCATCAGCATTTCCAAAATTTGAAGATCATATGTGGTGTTAACTCATTAACC-AATTATTAGACTTTGAGCAGTT----GCAGAACC-AAAATCTAAATGAGTACCTGGATCTTCTAATTCTGTTAAGTCAGTTAGTG------------CACATTATGCATG--ATAATCCTTTAGCCCAGT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             528064 196 -   3282555 ---ATACTTCCTTTTCCCAAAACA--------AGTTCCTGTCTGCCATCAGCATTTCCAAAATTGGAAGATCACATGTGGTGTTAACTCATTAACC-AATTATTAGACTTTGATCAATT----GTGGAACC-AAAATCTAAATGAGTACCTGGATCTTGTAGTTCTGTTAAATCAGTGAGTG------------CACATTATGCACA--ATACTCTTTTAGCCCAGT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       312843 196 -   1024465 ---ATACTTCCTTTTCCCAAAACA--------AGTTCCTGTCTGCCATCAGCATTTCCAAAACTTGAAGATCATCTGTGGTGTTAACTCATTAACC-AATTATTAGACTTTGAGCAATT----GTGGAACC-AAAATCTGAATAAGTACCTGGATCTTCTAATTATGTTAAATCAGTGAGTA------------CACATTATGCACA--GTACTCTTTTAGCCCAGT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       758042 196 -   3745603 ---ATACTTCCTTTTCCCAAAACA--------AGTTCCTGTCTGCCATCAGCATTTCCAGAATTTGAAGATCATGTGTGGTGTTAACTCATTAACC-AATTATTAGACTTTGAGCAATT----GTGGAACC-AAAATCTAAATGAGTACCTGGATCTTCTAATTCTGTTAAATCAGTGAGTG------------CACATTATGCACA--ATACTCTTTTAGCCCAGT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 942224 199 - 119751181 ---ATACTTCCTTTTCCTAAAACA--------AGTCCCTATCTACCTTTAACTTTTCCAGAATGTATAGAACAAGTATAGTGTTAACTTGCTAACA-GATCACTATACTTTGAGCAGTT----GTGGAACCAAAAATCTAAATGAGAACCTAGATCTTCTAATTCTGTTAAATCAGGAAGTG------------CTCATTATATACAAGATACTCTTTTAGCTCAGT
i micMur3.chr3              I 316 I 71
s proCoq1.NW_012149419v1       664888 198 -   2566024 ---ATACTTCCTTTTCCTAAAACA--------AGTCCATATCTACCTTTAACTTTTCCAGAATGTATAGAACAAGTATGGTGTTAACTTGCTAACA-GGTTACTAGACTTTGAGCAGTT----GTGGAATC-AAAATCTAAATGAGAACCTATATCTTCTAATTCTGTTAAATCAGCAGGTG------------CTCATTATGTATAAGATATTCTTTTAGCCCAGT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6781659 197 -  36342412 ---ATACTTCCTTTTCCTAAAACA--------AGTCCCTACCTACCTTTAGCTTTTCCAAAATGTATAGATCGAGTATGGTGTTAACTTATTGACA-GATTACTAGGCTTTGAGCAATT----GTAGAACC-ACATTCTAAGTGAGAACCTAAATCTTCT-ATACTGTTAAATCAGCAAATG------------TTCATTATGTACCAGATACTCTTTTAGCCCAAT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 72622 223 -  40214260 ACACAACTCTTTTTTCCTAAGATAATAGTCTGAGTCCCTGTCTGTATTTAGCATTTCTGAAGTGTAAAGATCAGTAATAGTGTTAACTCATTAACA-GATGACTAGAGTTTGAGCAATTTATGGAGAAACC-AAAATTCAAATGAAAGCATGGATCTTCTAATTCTGTTAAATCAACAAGTGCTTATTTAAAGCCACTTTATACAAG--ATACTCTTTGAGCCCATT
i canFam3.chr30             C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              64878 4010 -   2180720 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=6734.000000
s hg38.chr15_KI270850v1_alt    206971 1 +    430880 G
s panTro5.chr15              18016659 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17242932 1 -  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       305612 1 +    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161133 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60366561 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107363768 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1822669 1 -   1987038 G
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       317899 1 -   1458659 G
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501040 1 -   9444221 G
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18030901 1 + 132174527 A
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             528260 1 -   3282555 A
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313039 1 -   1024465 A
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       758238 1 -   3745603 A
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       665086 1 -   2566024 G
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6781856 1 -  36342412 G
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 72845 1 -  40214260 G
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 942423 71 - 119751181 I
e mm10.chr9                  55193894 813 + 124595110 I
e dasNov3.JH569975              64878 4010 -   2180720 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=189640.000000
s hg38.chr15_KI270850v1_alt    206972 30 +    430880 GCAGATTTAA--GGAGT-GAGAGAGAGATTTCA
s panTro5.chr15              18016660 29 -  83230942 GCAGATTTAA--GGAGT-GAGAGATAGATTTC-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17242933 29 -  99763055 GCAGATTTAA--GGAGT-GAGAGATAGATTTC-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       305613 30 +    378907 GCAGATTTAA--GGAGT-GAGAGAGAGATTTCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161134 25 + 121039945 GCAGATTTAA--GGAGT-GGG----AGATTTC-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60366562 29 + 169600520 GCAGATTTAA--GGAGT-GAGAGATAGATTTC-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107363769 29 - 171882078 GCAGATTTAA--GGAGT-GAGAGATCAATTTC-
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1822670 29 -   1987038 GCAGATTTAA--GGAGT-GAGAGATAGATTTC-
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       317900 29 -   1458659 GCAGATTTAA--GGAGT-GAGAGATCAATTTC-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501041 29 -   9444221 GCAGATTTAA--GGAGT-GGGAGATAGATTTC-
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18030902 29 + 132174527 GGAGATTTAA--AGAGT-GGAGGATAGATTTC-
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             528261 29 -   3282555 GGGGATTTAA--AGAAT-GGAGGAGAGATTTC-
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313040 29 -   1024465 GGGGATTTAA--AGAGT-GGTAGATAGATTTC-
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       758239 29 -   3745603 GGAGATTTAA--AGAGT-GGATGATAGATTTC-
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       665087 28 -   2566024 GGAGATTCAC--AAAAT-TGGAGATAGATTT--
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6781857 30 -  36342412 GGAGATTCAG--AGAATATACAAAAAGCATTC-
i otoGar3.GL873530          C 0 I 306
s canFam3.chr30                 72846 26 -  40214260 GGAGATTCAG--ATGAT-TGGAGATGTCT----
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              68888 27 -   2180720 gcagaactaaatgaaat-agaaaatagg-----
i dasNov3.JH569975          I 4010 C 0
e micMur3.chr3                 942423 71 - 119751181 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=234348.000000
s hg38.chr15_KI270850v1_alt    207002 35 +    430880 AATGTTTCAGAAATC-----AAATACACAAAG---AATAAAAA--
s panTro5.chr15              18016689 35 -  83230942 TATGTTTCAGAAATC-----AAATACACAAAG---AATAAAAA--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17242962 35 -  99763055 TATGTTTCAGAAATC-----AAATACACAAAG---AATAAAAA--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       305643 35 +    378907 AATGTTTCAGAAATC-----AAATACACAAAG---AATAAAAA--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161159 35 + 121039945 TATGTTTCAGAAATC-----AAATACACAAAG---AATAAAAA--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60366591 35 + 169600520 TATGTTTCAGAAATC-----AAATATACAAAG---AATAAACA--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107363798 35 - 171882078 TATGTTTCAGAAATC-----AAATACACAAAG---AATAAAAA--
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1822699 35 -   1987038 TATGTTTCAGAAATC-----AAATATACAAAG---AATAAACA--
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       317929 35 -   1458659 TATGTTTCAGAAATC-----AAATACACAAAG---AATAAAAA--
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501070 35 -   9444221 TATGTTTCAGAAATC-----AAATACACAAAG---AATAAAAA--
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18030931 34 + 132174527 --TGTTTCAGAAATA-----GAATATACAAAG--AAAAAAAAA--
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             528290 36 -   3282555 --TGTTTCAGAAATA-----GAATACACAAAGAAAAAAAAAAA--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313069 33 -   1024465 --TGTTTCAGAAATA-----GAATACACAAAG---AAAAAAAA--
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       758268 33 -   3745603 --TGTTTCAGAAATA-----GAATACACAAAG---AAAAAAAA--
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       665115 20 -   2566024 ---GTTTCAGGAATA-------------CAAG---AGTA------
i proCoq1.NW_012149419v1    C 0 C 0
s canFam3.chr30                 72872 35 -  40214260 -GTGTTTTAGAGATCTAGGAGAATATACAAAC---AAGT------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              68915 35 -   2180720 aaagcactagaaa-------aaagaaacaaaa---caaagagatg
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 942423 71 - 119751181 I
e mm10.chr9                  55193894 813 + 124595110 I
e otoGar3.GL873530            6781887 306 -  36342412 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=35777.000000
s hg38.chr15_KI270850v1_alt    207037 5 +    430880 -TTTTT
s panTro5.chr15              18016724 5 -  83230942 -TTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17242997 5 -  99763055 -TTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       305678 5 +    378907 -TTTGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161194 5 + 121039945 -TTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60366626 5 + 169600520 -TTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107363833 5 - 171882078 -TTTTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1822734 5 -   1987038 -TTTTT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       317964 5 -   1458659 -TTTTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501105 5 -   9444221 -ATTTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18030965 5 + 132174527 -TTTTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             528326 5 -   3282555 -ttttt
i saiBol1.JH378276          C 0 I 305
s cebCap1.NW_016107979v1       313102 5 -   1024465 -TTTTT
i cebCap1.NW_016107979v1    C 0 I 1
s aotNan1.NW_018511953v1       758301 5 -   3745603 -TTTTT
i aotNan1.NW_018511953v1    C 0 I 1
s micMur3.chr3                 942494 5 - 119751181 -TTTTT
i micMur3.chr3              I 71 C 0
s canFam3.chr30                 72907 4 -  40214260 --TTGT
i canFam3.chr30             C 0 I 1
s dasNov3.JH569975              68950 5 -   2180720 gtttt-
i dasNov3.JH569975          C 0 I 11
e proCoq1.NW_012149419v1       665135 0 -   2566024 C
e mm10.chr9                  55193894 813 + 124595110 I
e otoGar3.GL873530            6781887 306 -  36342412 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=379471.000000
s hg38.chr15_KI270850v1_alt    207042 44 +    430880 AATCCCATGATTCTTTACCTGAGTTTAATTTTTCGGAGAGTTTT
s panTro5.chr15              18016729 44 -  83230942 AATCCCATGATTCTTTACCTGAGTTTAATTTTTTGGAGAGTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243002 44 -  99763055 AATCCCATGATTCTTTACCTGAGTTTAATTTTTTGGAGAGTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       305683 44 +    378907 AATCCCATGATTGTTTACCTGAGTGTAATTTTTCGGAGAGTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161199 44 + 121039945 AATCCCATGATTCTTTACCTGAGTGAAATTTTTTGGAGAGTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60366631 44 + 169600520 AATCCCGTGATTCTTTGCTCGAGTTTAATTTTTTGGAGTGTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107363838 44 - 171882078 AATCCCATGATTCTTTACCTGAGTTTAGTTTTTTGGAGAGTTTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1822739 44 -   1987038 AATCCCGTGATTCTTTGCTCGAGTTTAATTTTTTGGAGTGTTTT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       317969 44 -   1458659 AATCCCATGATTCTTTACCTGAGTTTAGTTTTTTGGAGAGTTTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501110 44 -   9444221 AATCCCATGATTCTTTACCCAAGTTTAATTTTTTGGAGAATTTA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18030970 41 + 132174527 AAGCCTATCATTCTTTACCCGATTTTAAATTTTTAGAGAGT---
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             528636 41 -   3282555 AATCCCATCTTTCTTCACCTGATTTTAAATTTTTGGAGAGT---
i saiBol1.JH378276          I 305 C 0
s cebCap1.NW_016107979v1       313108 41 -   1024465 AATCCCATCTTTCTTCATCTCATTTTAAATTTTTGGAGAGT---
i cebCap1.NW_016107979v1    I 1 C 0
s aotNan1.NW_018511953v1       758307 41 -   3745603 AAGCCCATCATTCTTCACCCGATTTTAAATTTTTGGAGAGT---
i aotNan1.NW_018511953v1    I 1 C 0
s micMur3.chr3                 942499 44 - 119751181 AATCCCATGATTCTTCACCCAAATTAAATTTTGGGGGGTGTTTT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       665135 42 -   2566024 --TCCCATGATTCTTCACCCAAATTAAATTTTGGGGGGTGTTTT
i proCoq1.NW_012149419v1    C 0 C 0
s canFam3.chr30                 72912 44 -  40214260 AATCTTCTGATTCTCTACCCAAATTTAGTGTTTTGAAGTGTTTT
i canFam3.chr30             I 1 C 0
s dasNov3.JH569975              68966 43 -   2180720 AATTTCATGGTTCTCCACCCAAATTTAATTTTGTGGAGTGTTT-
i dasNov3.JH569975          I 11 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e otoGar3.GL873530            6781887 306 -  36342412 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=3799258.000000
s hg38.chr15_KI270850v1_alt    207086 370 +    430880 TCTTTTAGA----TTTTCTTTTCCTTCCATTAAACTTTCACTTTGAAAGCTCCCAGGGTTTGGGCA-AAGCAAGTGGGAAAGACAC-TTGCTTGGATTCTCCAGGGCAAGGGAGTTAAAG------AGGGCTTCTTTCCCTCATTTTATTATTGAATAATGTCATGAAA---ACAATTATTAAGGTGAATGGTCTACAGTAGAAGTTTTTAGATGC----CTTCTCTGCAAAATAATTTGGTTTAGTCAATGCAAGGATGCCTTTGGTTAGCTGGAATGGAAGATGCGCAGGCTAGAGTGGTCTTGGCAAGTCTTCT--------GGGG---------------GGAAA-T-ACAGCATTTGGAAGGGTAGGAAGCAGAAGGAATCTCAAGCAAGGGAAAGGTGTGGGCAGAGC
s panTro5.chr15              18016773 370 -  83230942 TCTTTTAGA----TTTTCTTTTCCTTCCATTAAACTTTCACTTTGAAAGTTCCCAGGGTTTGGGCA-AAGCAAGTGGGAAAGATAC-TTGCTTGGATTCTCCAGGGCAAGGGAGTTAAAG------AAGACTTCTTTCCCTCATTTTATTATTGAATAATGTCATGAAA---ACAATTATTAAGGTGAATGGTCTACAGTAGAAGTTTTTAGATGC----CTTCTCTGCAAAATAATTTGGTTTAGTCAATGCAAGGATGCCTTTGGTTAGCTGGAATGGAAGATGTGCAGGCTAGAGTGGTCTTGGCAAGTCTTCT--------GGGG---------------GGAAA-T-ACagcatttggatgggtaggaagcagaaggaatctcaagcaagggaaaggtgtgggcagagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243046 370 -  99763055 TCTTTTAGA----TTTTCTCTTCCTTCCATTAAACTTTCACTTTGAAAGTTCCCAGGGTTTGGGCA-AAGCAAGTGGGAAAGACAC-TTGCTTGGATTCTCCAGGGCAAGGGAGTTAAAG------AAGACTTCTTTCCCTCATTTTATTATTGAATAATGTCATGAAA---ACAATTATTAAGGTGAATGGTCTACAGTAGAAGTTTTTAGATGC----CTTCTCTGCAAAATAATTTGGTTTAGTCAATGCAAGGATGCCTTTGGTTAGCTGGAATGGAAGATGTGCAGGCTAGAGTGGTCTTGGCAAGTCTTCT--------GGGG---------------GGAAA-T-ACAGCATTTGGATGGGTAGGAAGCAGAAGGAATCTCAAGCAAGGGAAAGGTGTGGGCAGAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       305727 369 +    378907 TCTTTTAGA----TTTTCTTTTCCTTCCATTAAACTTTCACTTTGAAAGTTCCCAGGGTTTGGGCA-AAGCAAGTGGGAAAGACAC-TTGCTTGGATTCTCCAGGGCAAGGGAGTTAAAG------AAGACTTCTTTCCCTCATTTTATTATTGAATAATGTCATGAAA---ACAATTATTAAGGTGAATGGTCTACAGTAGAAGTTTTTAGATGC----CTTCTCTGCAAAATAATTTGGTTTAGTCAATGCAAGGATGCCTTTGGTTAGCTGGAATGGAAGATGCGCAGGCTAGAGTGGTCTTGGCAAGTCTTCT--------GGGG---------------GGAAA-T-ACAGCATTTGGAAGGGTAGGAAGCAGAA-GAATCTCAAGCAAGGGAAAGGTGTGGGCAGAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161243 372 + 121039945 TCTTTTAGA----TTTTCTTTTCCTTCCATTAAACTTTCACTTTGAAAGGTCCCAGGGTTTGGGCA-AAGCAAGTGG----GACAC-TTGCTTGGATTCTCCAGGGCAAGGGAGTTAAGGTTAAACAGGACTTCTTTCCCTCATTTTATTATTGAATAATGTCATGATA---ACAATTATTAAGGTGAATAGTCTACAGTAGAAGTTTTTAGATGC----CTTCTCTGCAAAATAATTTGGTTTAGTCAATGCAAGGATGCCTTTGGTTAGCTGGAATGGAAGATGCGCAGGCTAGACTGGTCTTGGCAAGTCTTCT--------GGGG---------------GGAAG-T-ACAGCATGTGGAAGGGTAGGAAGCCGAAGGAATCTCAAGCAAGGGAAAGGTGTGGGCAGAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60366675 370 + 169600520 TCTTTCAGA----TTTTCTTTCCTTTCCATTAAACTTTCACTTTGAAAGCTCCCAGGGTTTGGGCA-AAGCAAATAGGAAAGACAC-TTGCTTGGATTCTCCAGGGTAATGGAGTTAAAG------AGGACTTCTTTCCCTCATTTTGTTATTGAATAATGTCATGATA---ACAATTATTAAGGTGAATGGTCTACAGTAGAAGTTTTTAGATGC----CTTTTCTGCAAAATAATTTGGGTTTGTGAATGCAAGGATGCCTTTGGTTATCTGGAATGGAAGATGTGCAGGCTACAG-GGTCTTGGCAAGTCTTCT--------GGGG---------------GGAAA-TAACAGTATTTGGAAGGGTAGGAAGCAGAAGGAATCTCAGGCAAGGGAAAGGTGTGGGCAGAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107363882 370 - 171882078 TCTTTTAGA----TTTTCTTTCCTTTCCATTAAACTTTCACTTTGAAAGGTCCCAGGGTTTGGTCA-AAGCAAGTGGGAAAGCCAC-TTGCTTGGATTCTCCAGGGCAAAGGAGTTAAAG------AGGACTTCTTTCCCTCATTTTGTTATTGAATAATGTCATGATA---ACAATTATTAAGCTGAATGGTCTACAGTAGAAGTTTTTAGATGC----CTTCTCTGCAAAACAATTTGGTTTAGTCAATGCAAGGATGCCTTTGGTTAGCTGAAATGGAAGATGTGCAGGCTAGAGTGGTCTTGGCAAGTCTTCT--------GGGG---------------GGAAA-T-ACAGCATTTGGAAGGGTAGGAAGCAAAAGGAATCTTAGGCAAGGGAAAGGTGTGGCCAGAGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1822783 371 -   1987038 TCTTTCAGA----TTTTCTTTCCTTTCCATTAAACTTTCACTTTGAAAGCTCCCAGGGTTTGGGCA-AAGCAAATGGGAAAGACAC-TTGCTTGGATTCTCCAGGGTAATGGAGTTAAAG------AGGACTTCTTTCCCTCATTTTGTTATTGAATAATGTCATGATT---ACAATTATTAAGGTGAATGGTCTACAGTAGAAGTTTTTAGATGC----CTTTTCTGCAAAATAATTTGGGTTAGTCAATGCAAGGATGCCTTTGGTTATCTGGAATGGAAGATGTGCAGGCTACAG-GGTCTTGGCAAGTCTTCTG-------GGGG---------------GGAAA-TAACAGTATTTGGAAGGGTAGGAAGCAGAAGGAATCTCAGGCAAGGGAAAGGTGTGGGCAGAGA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       318013 370 -   1458659 TCTTTTAGA----TTTTCTTTCCTTTCCATTAAACTTTCACTTTGAAAGGTCCCAGGGTTTGGTCA-AAGCAAGTGGGAAAGCCAC-TTGCTTGGATTCTCCAGGGCAAAGGAGTTAAAG------AGGACTTCTTTCCCTCATTTTGTTATTGAATAATGTCATGATA---ACAATTATTAAGCTGAATGGTCTACAGTAGAAGTTTTTAGATGC----TTTCTCTGCAGAACAATTTGGTTTAGTCAATGCAAGGATGCCTTTGGTTAGCTGAAATGGAAGATGTGCAGGCTAGAGTGGTCTTGGCAAGTCTTCT--------TGGG---------------GGAAA-T-ACAGCATTTGGAAGGGTAGGAAGCAAAAGGAATCTTAGGCAAGGGAAAGGTGTGGCCAGAGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501154 369 -   9444221 TCTTTTAGA----TTTTCTTTCC-TTCCATTAAACTTTTACTTTGAAAGTTCCCAGGGTTTGGGCA-AAACAAATGGGAAAGACAC-TTGCTTGGATTCTCCAGAATAAGGGAG-TGAAG------AGGACTTCTTTTCCTCATTTTATTATTGAATAAAATCACGATA---ACAATTATTAAGGTGAATGGTCTACAGTAGAAGTTTTTAGACAA----CTTCTCTGCAAAATAATTTGGTTTAGTTAACACAAGTGTGCCTTTGGTTAGCTGGAATGGAAGATGTGCAGGCTAGAGTGGTCTTGGCAAGTCTTCTG-------GGGG---------------GGAAA-T-ACAACATTTGGAAGGGTAGGAAGCAGAAGGAATCTCAGGCAAGGGAAAGGCACATGCAGAGC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031011 358 + 132174527 -------------TTTTCTTTCCCTTCCATCAATCTTTCTCTTTGAAAGGTTTCAGGGTTTGTGCA-AAGCAAATGGAAAAGACAC-TTGCTTGGATTCTTTGGGGTGGGGGAGTC--AG------AGGGCTTCTTTCCCTCATTTTATTATTAAATCATGTCACTATA---ACAATGATTAGTGTGAATGGTCTACAGCAGAAGTTTTTAGATGC----CTTCTCTGCAAATAAATTTG---------ATACAAGGATATCTTTGGTTATCTGGAATGGAAGATGTGCAGGCTAGAGTGGTCTT-GCAAGTCTTATGT------GGGGTGGAGG--------GGGGAA-G-ACGGCATTTGGAAGAGTAGGAAGCAGAAGGAATCTCAGGCAAGGGAAAGGTATGGGCAGAGC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             528677 375 -   3282555 -------------TTTTCTTTTCCTTCCATCAATCTTTCTCTTTGAAAGGTTTCAGGGTTTGGGCA-AAGCAAATGGAAAATACAC-TTGCTTGGATTCTTCAGGGTGGGGGAGTCAAAG------AGGGCTTCTTTCCCTCATTTTATTATTAAATGATGTCACTATA---ACAATTATTAATGTGAACGGTCTACAGCAGAAGTTTTTAGATGC----CTTCTCTGCAAATAAATTTG---------ACACAAGGATACCTTTGGTTATCTGGAATGGAAGATGTGCAGGCCAGAATGGTCTTGGCAAGTCTTATGTTGGCGGGGGGTGGAGGGGTGTGGTGGGAAA-G-AGAGCATTTGGACGAGTAGGAAGCAGAAGGAATCTCAGGCAAGGGAAAGGTGTGGGCAGAGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313149 355 -   1024465 -------------TTTTCTTTCCTTTCCATCAATCTTTCTCTTTGAAAGGTTTCAGGGTTTGGGCA-AAGCAAATGGAAAAGACAC-TTGCTTGGATTCTTCAGGGTTGAGGAGTCAAAG------AGGGCTTCTTTCCCTCATTTTATTATTAAATGATGTCACTATA---ACAATTATTAATGTGAATGGTCTACAGCAGAAGTTTTTAGATGC----ATTCTCTGCAAATAAATTTG---------ACACAAGGATATCTTTGGTTATCTggagtgggagatgtgcaggctagagtggtcttggcaagttgtatgt------agggt--------------gggaa-g-acagcatttggatgagtagaaagcagaaggaatctcaggcaaggaaaaggcgtgggcagagc
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       758348 355 -   3745603 -------------TTTTCTTTCCCTTCCATCAGTCTTTCTCTTTGAAAGGTTTCAGGGTTTGGGCA-AAGCAAATGGAAAAGACAC-TTGCTTGGATTCTTCAGGGTGGTGGAGTCAAAG------AGGGCTTCTTTCCCTCATTTTATTATTAAATGATGTCACTATA---ACAATTATTAATGTGAATGGTCTGCAGCAGAAGTTTTTAGATGC----CTTCTCTGCAAGTAAATTTG---------ACACAAAGATGTCTTTGGTTAACTggaatgtaagatttgcaggctagagtggtcttggcaagtcttacgt------ggcg--------------gggaaa-g-atggcatttggatgagtagaaagcagaaggaatctcaggcaagggaaaggtgtgggcagagc
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 942543 365 - 119751181 TC--TTAGG----TTTTCTTTCCCTACTATTAAACTTTCACTTTGAAAGGTCACAGGGTTTGGGCA-AGGCAAGTA--AGATATAC-TTGCTTGAATTCTCCAGGATGGGGGAGTTGAAG------AATACTTCTTTCTCTCTTTTCATTATTGAATAATTTCACTATA---ACAATTACTATTGTTAATGTTCTACAGTAGTAGTTTTTGGATTCCTTACTTCACTGCAAAGTAATTTGGTTTAGTCAACACGAGGATGCATTTGGTTA-GTGGAATGGAAGATTCACAGGCTAGAATGGTCTTGGCAGGTTTTAT--------GGGG---------------GGAAAGT-ATGGCATTTGGA-----AGGAAGCAGAAGGAATCTCTGGTAAGGGAAAGGCATGGGCAAAGC
i micMur3.chr3              C 0 I 24
s proCoq1.NW_012149419v1       665177 359 -   2566024 TCTTTTAGG----TTTTCTTTCCCTACTATTAAACTTTCACTTTGAAAGGTCACAGGGTTTGGGCA-AAGCAAGTAAGAGAGATAC-TTGCTTGAATTCTCCAGGATGGGGGAGTTGAAG------AGTA---------ATCTTTTCATCATTGAATAATTTCACTATA---ACAATTACTATTGTTAATGTTCTACAGTAGAAGTTTTTAGATTCCTTACTTCACTGCAAAGTAATTTGGTTTAGTCAACACGAGGATGCATTTGGTTA-GTGGAATGGAAGATTCACAGGCTAGAATGGTCTTGGCAGGTTTTGT--------GGGG---------------GGAAA-T-ACGTCATTTGGA-----AGGAAGCAGAGGGAATCTCTGGTAAGGGAATGGCATGGGCAGAGC
i proCoq1.NW_012149419v1    C 0 I 56
s otoGar3.GL873530            6782193 363 -  36342412 TTTTTTGGATCATTTTTCTTTCCCTCTCATTAAATTCTCACTTTGGAAGGTCACAGGATTTGGGCA-AAGCATCTA--GGAGATAT-ACAGTTGAATTCTCCAGGATGGAACAGTTATAG------AGTACTACTTTCTCTCCTTTCATTATTGAATCACTTCGCTATA---ACAATTACTATTGTTAATACTGCACAGTAGAAGTTTTCAGATTCCTTACTTTACTACAA---AAATTACTTTAGTCACCATGGG--------TGGCT--TTGGAATGGAAGATTCACAGGCTAGAATGTTCTTGGCAGGTTTTAT--------GGAG---------------GGAAAAT-ATGGCATTTGAAAGGGTAGGAAGCAGAAGGAATCTCCAGCAAGGGAAAGGGTTGGGCA-AGC
i otoGar3.GL873530          I 306 I 4
s canFam3.chr30                 72956 339 -  40214260 ----------------TCTTTCCCTCCTATA-----TTAACTGTGGAAGTTCCCAGAGTTTGGTGC-AGTCAGGTTAGGGAGACAC-TAGCTTAAATTCTCCAGGATGTGGGACTTACTG------AATA-----------AATTCCATTACTGAATAATTTTACTATA---AC---TAATAATGATAATGGTCTACAATAGAAGTTTTTAGATTCCTTACTTTTCTG-----TAATTTGGTTTAGTCAACACAAGGAGGCATTTGGGTAGCCAGAATGCAAAATCTGTATACTAGAATGGTCTTGGCAAGCTTTACT-------GGAG---------------AAAGA-T-ACGGCATTTGGAAAAGTAGGGAGCCAAAAGAATGTCAGGCAAGGGAAAGACATGGGCAGAAT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              69009 352 -   2180720 -ATTTTAGA----TTTGCT-TCCCTCCCATTATACTTTCACTTTGG-AGGTCCTAGAGTTTGGGAACAAGCAAGTAGGAGAGGCACGTGGCTTGGATTCTCCAGGATGGGGGAGTTGAAG------AGTACTTCTTTACACCATCCCATTATTGaataattttattatatattttattattaatGATAATGGTCTACAGTAGAAGCTTT-AGATTCCTGATTTCTTTGCCAAGTAATTTGGTTTAGTCAACACAAGGATACATTTGTTTGACCAGAATGGAAGATTT-----------------------GTGTTCTG-------GGGG---------------AAAAA-G-GTGACATGTGAAAGAGTAGGTAGCAGAAGGAATCTCA-GCAGGGGAAAGGTGTGGGCAGAAC
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=31079.000000
s hg38.chr15_KI270850v1_alt    207456 3 +    430880 CCC
s panTro5.chr15              18017143 3 -  83230942 ccc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243416 3 -  99763055 CCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306096 3 +    378907 CCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161615 3 + 121039945 CCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60367045 3 + 169600520 CCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107364252 3 - 171882078 CCC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1823154 3 -   1987038 CCT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       318383 3 -   1458659 CCC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501523 3 -   9444221 CCC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031369 3 + 132174527 CCT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529052 3 -   3282555 CCC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313504 3 -   1024465 ccc
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       758703 3 -   3745603 ccc
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6782560 3 -  36342412 CTC
i otoGar3.GL873530          I 4 C 0
s canFam3.chr30                 73295 3 -  40214260 TCC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              69361 3 -   2180720 CCC
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 942908 24 - 119751181 I
e proCoq1.NW_012149419v1       665536 56 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5360856 485 -   6271500 I

a score=180818.000000
s hg38.chr15_KI270850v1_alt    207459 17 +    430880 GGAGGACAGAACCGTTT
s panTro5.chr15              18017146 17 -  83230942 ggaggACAGAACAGTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243419 17 -  99763055 GGAGGACAGAACAGTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306099 17 +    378907 GGAGGACAGAACCGTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161618 17 + 121039945 AGAGGACAGAACAGTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60367048 17 + 169600520 GGAGGATAGAACAGTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107364255 17 - 171882078 AGAGGAGAGAACAGTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5361341 17 -   6271500 GGAGGACAGAACAGTTT
i macNem1.NW_012011056v1    I 485 C 0
s cerAty1.NW_012002657v1      1823157 17 -   1987038 GGAGGATAGAACAGTTC
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       318386 17 -   1458659 AGAGGAGAGAACAGTTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501526 17 -   9444221 GGAGGACAGAACAGGTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031372 17 + 132174527 GGAGGACAGAACAATTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529055 17 -   3282555 GGAGGACAGAACAGTTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313507 17 -   1024465 ggaggACAGAACAATTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       758706 17 -   3745603 ggaggACAGAACAATTT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6782563 17 -  36342412 AGAGGACAACACAGTTT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 73298 17 -  40214260 AGAGGACAAAAAAGTTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              69364 16 -   2180720 AGAGGA-AAAAAAGTCT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 942908 24 - 119751181 I
e proCoq1.NW_012149419v1       665536 56 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I

a score=146637.000000
s hg38.chr15_KI270850v1_alt    207476 10 +    430880 GTGGTGGACT
s panTro5.chr15              18017163 10 -  83230942 GTGATGGACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243436 10 -  99763055 GTGATGGACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306116 10 +    378907 GTGGTGGACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161635 10 + 121039945 GTGGTGGACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60367065 10 + 169600520 GTGGTGGACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107364272 10 - 171882078 GTGGTGGACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5361358 10 -   6271500 GTGGTGGACT
i macNem1.NW_012011056v1    C 0 I 163
s cerAty1.NW_012002657v1      1823174 10 -   1987038 GTGGTGGACT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       318403 10 -   1458659 GTGGTGGACT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501543 10 -   9444221 GTGTTGGACT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031389 10 + 132174527 GTGGTGGACT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529072 10 -   3282555 GTGGTGGACT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313524 10 -   1024465 GTGGTGGACT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       758723 10 -   3745603 GTGGTGGACT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 942932 10 - 119751181 GTGGTGGACT
i micMur3.chr3              I 24 C 0
s otoGar3.GL873530            6782580 10 -  36342412 GTGGTGAACT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 73315 10 -  40214260 GTAATGGCCT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              69380 10 -   2180720 GTGGTGGACT
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       665536 56 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I

a score=182006.000000
s hg38.chr15_KI270850v1_alt    207486 19 +    430880 TGGTGTCCACATAGATCTA
s panTro5.chr15              18017173 19 -  83230942 TGGTGTCCACATAGATCTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243446 19 -  99763055 TGGTGTCCACATAGATCTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306126 19 +    378907 TGGTGTCCACATAGATCTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161645 19 + 121039945 TGGTGTCCACATAGATCTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60367075 19 + 169600520 TAGTGTCCACATAGACCTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107364282 19 - 171882078 TGGTGTCCACGTAGATCCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1823184 19 -   1987038 TAGTGTCCACATAGACCTA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       318413 19 -   1458659 TGGTGTCCACGTAGATCCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501553 19 -   9444221 TGGTGTCCACATAGACCTA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031399 19 + 132174527 TGGTGTCCACATAGACTTA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529082 19 -   3282555 TGGTGTCCATATAGACCTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313534 19 -   1024465 TGGTGTCCACATAGACCTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       758733 19 -   3745603 TGGTGTCCACATAGACCTA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 942942 17 - 119751181 --CTGTTCACATAGACCTA
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6782590 17 -  36342412 --CTGTTCACATTGACCTA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 73325 10 -  40214260 TGGTGTTCAG---------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              69390 19 -   2180720 CAGTGTTTCCATGTATCTA
i dasNov3.JH569975          C 0 I 4
e proCoq1.NW_012149419v1       665536 56 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5361368 163 -   6271500 I

a score=676999.000000
s hg38.chr15_KI270850v1_alt    207505 62 +    430880 ATCAGTGGTCTTAGCTTTTG--TGCTTTCAAAATTACCACAGTTTTTGTTCTAAAACTATCATT
s panTro5.chr15              18017192 62 -  83230942 ATCAGTGGTCTTAGCTTTCG--TGTTTTCAAAATTACCACAGTTTTTGTTCTAAAACTATCATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243465 62 -  99763055 ATCAGTGGTCTTAGCTTTCG--TGTTTTCAAAATTACCACAGTTTTTGTTCTAAAACTATCATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306145 62 +    378907 ATCAGTGGTCTTAGCTTTTG--TGTTTTCAAAATTACCACAGTTTTTGTTCTAAAACTATCATT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161664 62 + 121039945 ATCAGTGGTCTTAGCTTTTG--TGTTTTCAAAATTACCACAGTTTTTGTTCTAAAACTATCATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60367094 62 + 169600520 ATCAGTGGTCTTAGCTTTCA--TGTTTTCAAAATTACCACAGTTTTTCTTCTAAAACTATCATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107364301 61 - 171882078 ATCAGT-GTCTTAGCTTTTG--TGTTTTCAAAATTACCACAGTTTTTGTTCTAAAACTATCATT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1823203 62 -   1987038 ATCAGTGGTCTTAGCTTTTG--TGTTTTCAAAATTACCACAGTTTTTGTTCTAAAACTATCATT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       318432 61 -   1458659 ATCAGT-GTCTTAGCTTTTG--TGTTTTCAAAATTACCACAGTTTTTGTTCTAAAACTATCATT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501572 62 -   9444221 ATGAGTGGTCTTAGCTTTTG--TGTTTTCAAAATTACCACAGTTTGTGTGGTAAAACTGTCATT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031418 62 + 132174527 ATCAGTAATCTTAGCTTTTG--TGTTTTCAAAATTGCCACAGTTTTTCTTCTTAAACTGTCAAC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529101 58 -   3282555 ATCAGTGATCTTAGCTTTTG--TGTTTTCAAAATTGCCACAGTT----TTCTTAAATTATCATC
i saiBol1.JH378276          C 0 I 201
s cebCap1.NW_016107979v1       313553 62 -   1024465 ATCAGTGATCTTAGCTTTTG--TGTTTTCAAAATTGCCACAGTTTTTCTTCTTAAACTATCATC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       758752 62 -   3745603 ATCAGTGATCTTAGCTTTTA--TGTTTTCAAAATTGCCACAGTTTTTCTTCTTAAACTATCATC
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 942959 62 - 119751181 ATCGGTGGTCATAACTTTTG--TGTTTTCAAAATTACCACAGTTTTTCTAATAAATTTATCATT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       665592 64 -   2566024 ATCGGTGGTCGTAGCTTTTGAATGTTTTCAAAATTACCACAGTTTTTCTAATAAAATTATCATT
i proCoq1.NW_012149419v1    I 56 C 0
s otoGar3.GL873530            6782607 48 -  36342412 ATCAATGGTCTTAGCTTTTG--TGTTTTCAAAAATACCACAGTTTTTCta--------------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 73335 54 -  40214260 ACTTGTGGTCTTAGCTTATG--TATTTTCAAGATTT-----ATCAGTCTTCTATAATTATT---
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              69413 62 -   2180720 ATCAGTGGTCTAAGCTTATG--TATTGTCAAGATTACTGCTGTTTTTCATCTAAAATTCTCATT
i dasNov3.JH569975          I 4 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5361368 163 -   6271500 I

a score=115051.000000
s hg38.chr15_KI270850v1_alt    207567 11 +    430880 CCCTTGATTTT
s panTro5.chr15              18017254 11 -  83230942 CCCTTGATTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243527 11 -  99763055 CCCTTGATTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306207 11 +    378907 CCCTTGATTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161726 11 + 121039945 CCCTTGATTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60367156 11 + 169600520 CCCTTGATTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107364362 11 - 171882078 CCTTTGATTTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1823265 11 -   1987038 CCCTTGATTTT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       318493 11 -   1458659 CCTTTGATTTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501634 11 -   9444221 CTCTTGATTTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031480 10 + 132174527 CTCTTGATTT-
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529360 10 -   3282555 CTCTTGATTT-
i saiBol1.JH378276          I 201 C 0
s cebCap1.NW_016107979v1       313615 10 -   1024465 CTCTTGATTT-
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       758814 10 -   3745603 CTCTTGATTT-
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 943021 11 - 119751181 CCTTTGATTTT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       665656 11 -   2566024 CCCTTGAtttt
i proCoq1.NW_012149419v1    C 0 I 346
s otoGar3.GL873530            6782655  5 -  36342412 ------atttt
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 73389 11 -  40214260 CCCTTGATTTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              69475 11 -   2180720 TCCTTGATTTT
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5361368 163 -   6271500 I

a score=164567.000000
s hg38.chr15_KI270850v1_alt    207578 24 +    430880 -ACTTTAGGCATGCTATCT---GTGTAT
s panTro5.chr15              18017265 24 -  83230942 -ACTTTAGGCATGCTATCT---GTGTAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243538 24 -  99763055 -ACTTTAGGCATGCTATCT---GTGTAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306218 24 +    378907 -ACTTTAGGCATGCTATCT---GTGTAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161737 24 + 121039945 -ACTTTAGGCATGCTATCT---GGGTAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60367167 24 + 169600520 -ATCTTAGGCATGCTATTT---GTGTAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107364373 24 - 171882078 -ATTTTAGGCATGCTATCT---GTGTAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1823276 24 -   1987038 -ATTTTAGGCATGCTATTT---GTGTAT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       318504 24 -   1458659 -ATTTTAGGCATGCTATCT---GTGTGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501645 24 -   9444221 -ATTTTAGGCATGCTATCT---GTGTAT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031490 21 + 132174527 ----TTAGGCATGATATTT---ATGTAT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529370 21 -   3282555 ----TTAGGCATGATACTT---ATGTAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313625 21 -   1024465 ----TTAGGCATGATATTT---ATGTAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       758824 21 -   3745603 ----TTAGGCGTGATATTT---ATGTAT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 943032 11 - 119751181 ---------------ATTT--AATGTAT
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6782660 25 -  36342412 -tttctaataaaattattt--aatGTAT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 73400 25 -  40214260 -ATTTTAGGCATGATATTT--AATATAT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              69486 28 -   2180720 GTTTTTAGGCATGATATATTTAATGTAT
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       665667 346 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5361368 163 -   6271500 I

a score=317113.000000
s hg38.chr15_KI270850v1_alt    207602 26 +    430880 TTTGAAATTTAAAATAACATTAAAGG
s panTro5.chr15              18017289 26 -  83230942 TTTGAAATTTAAAATAACATTAGAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243562 26 -  99763055 TTTGAAATTTAAAATAACATTAGAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306242 26 +    378907 TTTGAAATTTAAAATAGCATTAAAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161761 26 + 121039945 TTTGAAATTTAAAATAACATTAAAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60367191 26 + 169600520 Tttgaaatttaaaataacattaaagg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107364397 26 - 171882078 TTTGAAATTTAAAATAACATTAAGGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1823300 26 -   1987038 Tttgaaatttaaaataacattaaagg
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       318528 26 -   1458659 TTTGAAATTTAAAATAACAGTAAGGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501669 26 -   9444221 TTTGAAATTCAAAATAACATTAAAGG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031511 26 + 132174527 TTTGAAATTTAAAATAACATTAAAGG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529391 26 -   3282555 TTTGAAATTTAAAATAGCATTAAAGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313646 26 -   1024465 TTTGAAATTTAAAATAACATTAAAGG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       758845 21 -   3745603 TTTGAAATTTAA-----CATTAAAGG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 943043 25 - 119751181 TTTGAAATTTCAAGTAACATT-AGGG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       666013 26 -   2566024 TTTGAAGTTTCAAGTAACATTAAGGG
i proCoq1.NW_012149419v1    I 346 C 0
s otoGar3.GL873530            6782685 26 -  36342412 TATGAAGTTTCAAATAACATTAAGGG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 73425 26 -  40214260 TTTGAAGGTCAAAATAACATTAAAGG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              69514 26 -   2180720 TTTGAAGATTAAAATGACAGTGAAGG
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5361368 163 -   6271500 I

a score=579778.000000
s hg38.chr15_KI270850v1_alt    207628 49 +    430880 -AGAAATGAAATTATTTT-----GTTT---GAGAAAGAATTAAAAGGTTAAAA-CATCT
s panTro5.chr15              18017315 49 -  83230942 -AGAAATGAAATTATTTT-----GTTT---GAGAAGGAGTTAAAAGGTTAAAG-CATCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243588 46 -  99763055 -AGAAATGAAATTATTTT-----GTTT---GAG---GAGTTAAAAGGTTAAAG-CATCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306268 49 +    378907 -AGAAATGAAATTATTTT-----GTTT---GAGAAAGAATTAAAAGGTTAAAA-CATCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161787 47 + 121039945 -AGAAATGAAATTATTTT-----GTTT---GAGA--AAGTTAAAAGGTTAAAA-CATCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60367217 49 + 169600520 -agaattgaaattgTTTT-----GTTT---GAGAAAGAGTTAAAAGGTTAAAA-CATAT
i rheMac8.chr7              C 0 I 6182
s macFas5.chr7              107364423 49 - 171882078 -AGAAATGAAATGATTTT-----GTTT---GAGAAAGAGTTAAAAGGTTAAAA-CATCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5361531 53 -   6271500 -AGAAATGAAATTATTTT-----GTTTGGAGGGAAAGAGTTAAAAGGTTAAAAGTATCT
i macNem1.NW_012011056v1    I 163 C 0
s cerAty1.NW_012002657v1      1823326 49 -   1987038 -agaattgaaattgTTTT-----GTTT---GAGAAAGAGTTAAAAGGTTAAAA-CATAT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       318554 49 -   1458659 -AGAAATGAAATGATTTT-----GTTT---GAGAAAGAGTTAAAAGGTTAAAA-CATCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501695 49 -   9444221 -AGAAATGAAATTATTTT-----GTTT---GTGAAAGAGTCAAAAGGTTGAAA-CATCT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031537 49 + 132174527 -AGAAATGGAATTATTTT-----GTTT---GAGAAAGAGTTAAAAGGGTAAAA-AATTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529417 49 -   3282555 -AGAAATGAAATTATTTT-----GTTT---GAGAAAGAGTTAAAAGATTAAAA-AATTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313672 49 -   1024465 -AGAAATGAAATTATTTT-----GTTT---GAGCAAGAGTTAAAAGATTAAAA-CATTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       758866 49 -   3745603 -AGAAATGAAATTATTTT-----GTTT---GAGAAAGAGTTAAAAGATTAAAA-AAAAT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 943068 49 - 119751181 -AGAAATGAAATTATTTT-----GTTT---GAGAAAGGGTTAAAAGGCTGAAG-AATCT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       666039 48 -   2566024 -AGGAATGAAATTATTTT------TTT---GAGAAGGGGTTAAAAGGCTGAAG-AATCT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6782711 54 -  36342412 -GGGAATGAAGTTATTTTATTTTGTTT---GAGAAAGGTTTAAAACGTAGCAG-AATTT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 73451 49 -  40214260 -AGAAATGAAATTATTTT-----GTTT---GAGGAAGGGTTAAAAGGTTGAAT-AATCT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              69540 40 -   2180720 AGGCAATGAAATTATTTT-----GTTT---GTGAATGGTTTGGAATCT-----------
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I

a score=82450.000000
s hg38.chr15_KI270850v1_alt    207677 7 +    430880 T-GATCTA
s panTro5.chr15              18017364 7 -  83230942 T-GAGCTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243634 7 -  99763055 T-GAGCTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306317 7 +    378907 T-GATCTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161834 7 + 121039945 T-GATCTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60373448 7 + 169600520 T-GATCTA
i rheMac8.chr7              I 6182 C 0
s macFas5.chr7              107364472 7 - 171882078 T-GATCTA
i macFas5.chr7              C 0 I 317
s macNem1.NW_012011056v1      5361584 8 -   6271500 TCGATCTA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1823375 7 -   1987038 T-GATCTA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       318603 7 -   1458659 T-GATCTA
i manLeu1.NW_012105520v1    C 0 I 318
s colAng1.NW_012112253v1      7501744 7 -   9444221 T-GATCTA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031586 7 + 132174527 T-TATCTA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529466 7 -   3282555 T-TATCTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313721 7 -   1024465 T-TCTCTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       758915 7 -   3745603 T-TATCTA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 943117 7 - 119751181 T-GATCTA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       666087 7 -   2566024 T-GATCTA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6782765 6 -  36342412 T--ATCTA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 73500 7 -  40214260 T-GATCTA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              69580 7 -   2180720 T-GATCTA
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I

a score=73328.000000
s hg38.chr15_KI270850v1_alt    207684 6 +    430880 AATAAT---
s panTro5.chr15              18017371 6 -  83230942 AATAAT---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243641 6 -  99763055 AATAAT---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306324 6 +    378907 AATAAT---
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161841 6 + 121039945 AATAAT---
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60373455 6 + 169600520 AATAAT---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107364796 6 - 171882078 AATAAT---
i macFas5.chr7              I 317 C 0
s macNem1.NW_012011056v1      5361592 6 -   6271500 AATAAT---
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1823382 6 -   1987038 AATAAT---
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       318928 6 -   1458659 AATAAT---
i manLeu1.NW_012105520v1    I 318 C 0
s colAng1.NW_012112253v1      7501751 6 -   9444221 AATCAT---
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031593 6 + 132174527 AATGAT---
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529473 6 -   3282555 AATGAT---
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313728 6 -   1024465 AATGAT---
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       758922 6 -   3745603 AATGAT---
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 943124 6 - 119751181 AATAAT---
i micMur3.chr3              C 0 I 183
s proCoq1.NW_012149419v1       666094 6 -   2566024 AATAAT---
i proCoq1.NW_012149419v1    C 0 I 34
s otoGar3.GL873530            6782771 6 -  36342412 AACAAT---
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 73507 6 -  40214260 AATAAC---
i canFam3.chr30             C 0 I 2
s dasNov3.JH569975              69587 9 -   2180720 AATGTTGAT
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I

a score=327176.000000
s hg38.chr15_KI270850v1_alt    207690 31 +    430880 TTTCTAATGGGA---GATTTGG--TACATCCCCAGA
s panTro5.chr15              18017377 31 -  83230942 TTTCTAATGGGA---GATTTGG--TACACCCCCAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243647 31 -  99763055 TTTCTAATGGGA---GATTTGG--TACACCCCCAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306330 31 +    378907 TTTCTAATGGGA---GATTTGG--TACATCCCCAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161847 31 + 121039945 TTTCTAATGGGA---GATTTGG--TACATCCCCAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60373461 31 + 169600520 TTTCTAATGGGA---GATTTGG--TACATCCCTAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107364802 31 - 171882078 TTTCTAATGGGA---GATTTGG--TACATCCCCAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5361598 34 -   6271500 TTTCTAATGGGGAGCGATTTGG--TAAGTCCCCAGA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1823388 31 -   1987038 TTTCTAATGGGA---GATTTGG--TACATCCCTAGA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       318934 31 -   1458659 TTTCTAATGGGA---GATTTGG--TACATCCCCAGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501757 31 -   9444221 TTTCTAATGGGA---GATTTGG--TACATCCCCAGA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031599 33 + 132174527 TTCCTAATGGGA---GATTCGAGGTACATCCTTAGA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529479 31 -   3282555 TTCCTAATGGGA---GATCTGA--TACATCCCCAGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313734 31 -   1024465 TTCCTAATGGGA---GATTTGA--TACATCCCCAGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       758928 31 -   3745603 TTCCTAATGGGA---GATTTGA--TACATCCCCAGA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6782777 31 -  36342412 TTCCTAAAGGGA---GAGCTGG--GAGAGCCACAGG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 73515 31 -  40214260 TTTCCTAAGAGA---AATCTGG--GAGATTTCCAGA
i canFam3.chr30             I 2 C 0
s dasNov3.JH569975              69596 31 -   2180720 TTCCTATATGGA---GATCTGG--GATATCCCCAGA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 943130 183 - 119751181 I
e proCoq1.NW_012149419v1       666100 34 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I

a score=300818.000000
s hg38.chr15_KI270850v1_alt    207721 26 +    430880 AGTTGTCTTTGGTTCA-GAG---AACAGTC
s panTro5.chr15              18017408 26 -  83230942 AGTTGTCTTTGGTTCA-GAG---AACAGTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243678 26 -  99763055 AGTTGTCTTTGGTTCA-GAG---AACAGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306361 26 +    378907 AGTTGTCTTTGGTTCA-GAG---AACAGTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161878 26 + 121039945 TGTTGTCTTTGGTTCA-GAG---AACAGTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60373492 26 + 169600520 AGTTGTCTTTGGTTCA-GAG---AACAGTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107364833 26 - 171882078 AGTTGTCTTTGGTTCA-GAG---AACAGTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5361632 27 -   6271500 AGTTGTCTTTGATTCAGGAG---AACAGTC
i macNem1.NW_012011056v1    C 0 I 1
s cerAty1.NW_012002657v1      1823419 26 -   1987038 AGTTGTCTTTGGTTCA-GAG---AACAGTC
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       318965 26 -   1458659 AGTTGTCTTTGGTTCA-GAG---AACAGTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501788 26 -   9444221 AGTTGTCTTTGGTTCA-CAG---AATAATC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031632 26 + 132174527 ACTTGTCTTTGGTGCA-GAG---AGTAATC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529510 29 -   3282555 ACTTGTCTTTGGTGCA-GAGAGTAGTAATC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313765 26 -   1024465 ACTTGTCTTTGGTGCA-GAG---AGTAATC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       758959 26 -   3745603 ACTTGTCTTTGGTGCA-GAG---AGTAATC
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       666134 26 -   2566024 AGTTGTCTTTGGTTCA-GAG---AGCAGTC
i proCoq1.NW_012149419v1    I 34 I 122
s otoGar3.GL873530            6782808 26 -  36342412 AGTTGTCTTTAGTTCT-GAG---AGCAGTC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 73546 24 -  40214260 AGTTGTC--TGGTTCA-GAG---AACAGTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              69627 26 -   2180720 AGTTACCTTTTATTCA-GAA---ACTATTC
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 943130 183 - 119751181 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I

a score=894640.000000
s hg38.chr15_KI270850v1_alt    207747 108 +    430880 TTCAGACCT--AG-AA--AGGAC-TTGAGGAGTCCCAGAG-AGGAGCCACATGG-TGTGAACCATTCGATTCTCACAACAGAATGG------------ATAAGAACAATTTCAACCATG--AA---ACCGTGC
s panTro5.chr15              18017434 108 -  83230942 TTCAGACCT--AG-AA--AGGAC-TTGAGGAGTCCCAGAG-AGGAGCCGCATGG-TGTGAACCATTCGATTCTCACAACAGAATGG------------ATAAAAACAATTTGAACCATG--AA---ACCATGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243704 108 -  99763055 TTCAGACCT--AG-AA--AGGAC-TTGAGGAGTCCCAGAG-AGGAGCCGCATGG-TGTGAACCATTCGATTCTCACAACAGAATGG------------ATAAAAACAATTTGAACCATG--AA---ACCATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306387 108 +    378907 TTCAGACCT--AG-AA--AGGAC-TTGAGGAGTCCCAGAG-AGGAGCCGCATGG-TGTGAACCATTCGATTCTCACAACAGAATGG------------ATAAGAACAATTTCAACCATG--AA---ACCGTGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102161904 108 + 121039945 TTCAGACCT--AG-AA--AGGAC-TTGAGGAGTCCCAGAG-AGGAGCCTCATGG-TGTGAACCATTTGATTCTCACAACAGAATGG------------ATAAAAACAATTTGAACCACG--AA---ACCATGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60373518 108 + 169600520 TTCAGACTT--AG-AA--AGGAC-TTGAGGAGTCCCAGAG-AGGAACTGCATGG-TCTGAACCGTTTGATTCTCACAACAGAATGC------------ATAAAAACAATTTGAACCATG--AA---ACCATGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107364859 108 - 171882078 TTCAGTCTT--AG-AA--AGGAC-TTGAGGAGTCCCACAG-AGGAGCCACATGC-TGTGAACCATTTGATTCTCACAACAGAATGG------------ATAAAAATAATTTGAACCATG--AA---ACCATGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5361660 110 -   6271500 TTCAGACCT--AGAAA--AGGACATTGAGGATCCACA-GG-AGGAGCCACATGCTTGTGAACCTTTTGATTCTCACAACAGAATGG------------ATAAAAAAAATGTGAACCATG--AA---ACCATGC
i macNem1.NW_012011056v1    I 1 I 84
s cerAty1.NW_012002657v1      1823445 108 -   1987038 TTCAGACCT--AG-AA--AGGAC-TTGAGGAGTCCCAGAG-AGGAACTGCATGG-TGTGAACCGTTTGATTCTCACAACAGAATGC------------ATAAAAACAATTTGAACCATG--AA---ACCATGC
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       318991 108 -   1458659 TTCAGGCTT--AG-AA--AGGAC-TTGAGGAGTCCCACAG-AGGAGCCACATGC-TGTGAACCATTTGATTCTCACAACAGAATGG------------ATAAAAATAATTTGAACCATG--AA---ACCATGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501814 108 -   9444221 TTCAGACCT--AG-AA--AGGAC-TTGAGGAGTCCCAGAG-AGGAGCTGCATGG-TCTGAACCATTTGATTCTCACAACAGAATGG------------ACGAAAACAATTTGAACCATG--AA---ACCATGC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031658 108 + 132174527 TTAAAGTCT--AG-AA--AGAGC-TTGAGGAGTCTCAGAG-AGGAGATCCATGG-TCAGAACCATTTGATTCTCACAACAGAATGG------------ATAAAAACAATTTGAACCATA--AA---AGTATGC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529539  89 -   3282555 TTCAGGTCT--AG-AA--AGAGC-TTGAGGAGTCTCAGAG-AGGAGATCCCTGG-TCAGAACCATTTGATTCTCACAACA-------------------------------GAACCATA--AA---AGTGTGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313791  89 -   1024465 TTCAGGTCT--AG-AA--AGAGC-TTGAGGAGTCTCAGAG-AGGAGATCCATGG-TCAGAACCATTTGATTCTCACAACA-------------------------------GAACCATA--AA---AGTGTGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       758985 107 -   3745603 TTTAGGTCT--AG-AA--AGAGC-TTGAGGAGTCTCAGAG-AGGAGATCCATGG-TCAGAACCATTTGA-TCTCACAACAGAATGG------------ATAAAAACAATTTGAACCATA--AA---AGTATGC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6782834 104 -  36342412 CTTGAACCTTCAA-AG--AGAAA-CTGAG---TCTCAGAG-AAGGGCTTTGTGG-TCAGAACCATTTGATTTTGACAGCTGAGTGG------------GTAAAAAC---TTAACCCATA--AA---AACGTCC
i otoGar3.GL873530          C 0 I 3
s canFam3.chr30                 73570 114 -  40214260 CTCAGGATT--GG-AAAGAGAAA-TTGAGGAGTCCCAGAGAAGGGACTCTATGG-TGAGAACCACTTGATCCTCACAAAGAGATGG------------ATGAAAACAATTTAAACCACA--AAAATACCATGT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              69653  99 -   2180720 CTCAGGCCT--AC-AA----------------------AG-AGGAGACAC-----TCAGAGCCATTTGTTCCTTACAACAGAATGATATTTCAACCATAGTATACCAATTTAAATCATAGTAT---ACCATGC
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 943130 183 - 119751181 I
e proCoq1.NW_012149419v1       666160 122 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I

a score=139367.000000
s hg38.chr15_KI270850v1_alt    207855 17 +    430880 AGA-TGTTCA-TATTTTGA
s panTro5.chr15              18017542 17 -  83230942 AGA-TGTTCA-TATTTTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243812 17 -  99763055 AGA-TGTTCA-TATTTTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306495 17 +    378907 AGA-TGTTCA-TATTTTGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162012 17 + 121039945 AGA-TGTTCA-TATTTTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60373626 17 + 169600520 AGA-TGTTCA-TATTTTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107364967 17 - 171882078 AGA-TGTTCA-TATTTTGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1823553 17 -   1987038 AGA-TGTTCA-TATTTTGG
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       319099 17 -   1458659 AGA-TGTTCG-TATTTTGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501922 17 -   9444221 AGA-TGTTTA-TATTTTGG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031766 17 + 132174527 AGA-TGTTCA-TATTATGC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529628 17 -   3282555 AGA-TGTTCA-TATTATGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313880 17 -   1024465 AGA-TGTTCA-TATTATGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       759092 17 -   3745603 AGA-TGTTCG-TACTATGC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6782941 18 -  36342412 AGA-TACTCATTATTATGG
i otoGar3.GL873530          I 3 C 0
s canFam3.chr30                 73684 17 -  40214260 -CA-TGTTCATTATTACAG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              69752 19 -   2180720 AGATTGTTCATTATTGTGA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 943130 183 - 119751181 I
e proCoq1.NW_012149419v1       666160 122 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5361770 84 -   6271500 I

a score=11849.000000
s hg38.chr15_KI270850v1_alt    207872 1 +    430880 A
s panTro5.chr15              18017559 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243829 1 -  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306512 1 +    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162029 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60373643 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107364984 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1823570 1 -   1987038 G
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       319116 1 -   1458659 A
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501939 1 -   9444221 A
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031783 1 + 132174527 A
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529645 1 -   3282555 A
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313897 1 -   1024465 A
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       759109 1 -   3745603 A
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       666282 1 -   2566024 A
i proCoq1.NW_012149419v1    I 122 C 0
s otoGar3.GL873530            6782959 1 -  36342412 A
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 73701 1 -  40214260 A
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              69771 1 -   2180720 A
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 943130 183 - 119751181 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5361770 84 -   6271500 I

a score=452106.000000
s hg38.chr15_KI270850v1_alt    207873 41 +    430880 TAGGGTAAGATCGGTGCCATTGTCAGAGGAA----AAACTCCTGG
s panTro5.chr15              18017560 41 -  83230942 TAGGGTAGGGTCAGTGCCATTGTCAGAGGAA----AAACTCTTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243830 41 -  99763055 TAGGGTAGGGTCAGTGCCATTGTCAGAGGAA----AAACTCTTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306513 41 +    378907 TAGGGTAAGATCAGTGCCATTGTCAGAGGAA----AAACTCCTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162030 41 + 121039945 TAGGGTAGGGTCAGTGCCATCGTCAGAGGAA----AAACTCTTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60373644 41 + 169600520 TAGGGTAAGGTCAGTGCCATTGTCAGAGGAA----AAACTCTTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107364985 41 - 171882078 TAGGGTAAGGTCAGTGCCATTGTCAGAGGAA----AAACCCTTGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1823571 41 -   1987038 TAGGGTAAGGTCAGTGCCATTGTCAGAGGAA----AAACTCTTGG
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       319117 41 -   1458659 TAGGGTAAGGTCAGTGCCATTGTCAGAGGAA----AAACCCTTGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501940 41 -   9444221 TAGGGGAAGGTCAGTGCCATTGTCAGAGGAA----AAACTCTTGG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031784 41 + 132174527 TAGGATAAGGTCAATGCCATTGTCAGGGGAA----TAACTCTTGA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529646 41 -   3282555 TAGGATAAGTTCAATGCCATTGTCAGGGGAA----TAACTCTTGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313898 41 -   1024465 TAGGATAAGGTCAATGCCATTGTCAGGGGAA----TAACTCTTGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       759110 41 -   3745603 TAGGATAAGGTCAATGCCATTGTCAGGGGAA----TAACTCTTGA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 943313 41 - 119751181 TAGGGTAAGGTTGGTGCCACTGTTAGAGGAA----AAACTCTTGG
i micMur3.chr3              I 183 I 32
s proCoq1.NW_012149419v1       666283 41 -   2566024 TAGGGTAAGGTTGGTGCCATTGTTGGAGGAA----AAACTCTTGG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6782960 41 -  36342412 TGCAGTAAAGTTGCTGCCATAGTCAGAGGAA----AAACACTTGG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 73702 23 -  40214260 TGGGGCAAAACTGGTGTCATTGG----------------------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              69772 45 -   2180720 TAGAGAAAAATTGGTGTCACTGTCAAAGAAAGGATAAACTCTTGG
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5361770 84 -   6271500 I

a score=15300.000000
s hg38.chr15_KI270850v1_alt    207914 1 +    430880 C
s panTro5.chr15              18017601 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243871 1 -  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306554 1 +    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162071 1 + 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60373685 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107365026 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1823612 1 -   1987038 C
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       319158 1 -   1458659 C
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501981 1 -   9444221 C
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031825 1 + 132174527 C
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529687 1 -   3282555 C
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313939 1 -   1024465 C
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       759151 1 -   3745603 C
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       666324 1 -   2566024 C
i proCoq1.NW_012149419v1    C 0 I 49
s otoGar3.GL873530            6783001 1 -  36342412 C
i otoGar3.GL873530          C 0 I 2
s canFam3.chr30                 73725 1 -  40214260 C
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              69817 1 -   2180720 C
i dasNov3.JH569975          C 0 I 2
e micMur3.chr3                 943354 32 - 119751181 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5361770 84 -   6271500 I

a score=87970.000000
s hg38.chr15_KI270850v1_alt    207915 15 +    430880 CATCACAGGTTGGGA
s panTro5.chr15              18017602 15 -  83230942 CATCACAGGATGGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243872 15 -  99763055 CATCACAGGATGGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306555 15 +    378907 CATCACAGGTTGGGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162072 15 + 121039945 CATCACAGGATGGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60373686 15 + 169600520 CATCACAGGATGGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107365027 15 - 171882078 CATCACAGGATGGGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1823613 15 -   1987038 CATCACAGGATGGGA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       319159 15 -   1458659 CATCACAGGATGGGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501982 15 -   9444221 CATCACAGGATGGGA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031826  4 + 132174527 T-----------GTA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529688 15 -   3282555 TGTAACATGATGGTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313940 15 -   1024465 TGTAACATGATGGTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       759152 15 -   3745603 TGTAACATGATGGTA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6783004 15 -  36342412 AGTAACATGATGGTA
i otoGar3.GL873530          I 2 C 0
s canFam3.chr30                 73726 13 -  40214260 --TAACATAACTGTT
i canFam3.chr30             C 0 I 1
s dasNov3.JH569975              69820 15 -   2180720 TATAACACAATGGTA
i dasNov3.JH569975          I 2 C 0
e micMur3.chr3                 943354 32 - 119751181 I
e proCoq1.NW_012149419v1       666325 49 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5361770 84 -   6271500 I

a score=134521.000000
s hg38.chr15_KI270850v1_alt    207930 14 +    430880 GAGAAAGTTTCCAT
s panTro5.chr15              18017617 14 -  83230942 GAGAAAGTTTCCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243887 14 -  99763055 GAGAAAGTTTCCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306570 14 +    378907 GAGAAAGTTTCCAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162087 14 + 121039945 GAGAAAGTTTCCAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60373701 14 + 169600520 GAGAAAGTTTCCGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107365042 14 - 171882078 GAGAAAGTTTCCGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5361854 14 -   6271500 GAGAAAGTTTCCAT
i macNem1.NW_012011056v1    I 84 C 0
s cerAty1.NW_012002657v1      1823628 14 -   1987038 GAGAAAGTTTCCGT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       319174 14 -   1458659 GAGAAAGTTTCCGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7501997 14 -   9444221 GAGAAAGTTTCAGT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031830 14 + 132174527 GAGAAAGTTTCAGA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529703 14 -   3282555 GAGAAAGTTTCAGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313955 14 -   1024465 GAGAAAGTTTCAGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       759167 14 -   3745603 GGGAAAGTTTCAGA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6783019 14 -  36342412 GAGAAAGTTTCAGA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 73740 14 -  40214260 GAGAAATTTTCAGA
i canFam3.chr30             I 1 I 4
s dasNov3.JH569975              69835  7 -   2180720 GAGAAAT-------
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 943354 32 - 119751181 I
e proCoq1.NW_012149419v1       666325 49 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I

a score=101897.000000
s hg38.chr15_KI270850v1_alt    207944 9 +    430880 TGTAAAGAA
s panTro5.chr15              18017631 9 -  83230942 TGTAAAGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243901 9 -  99763055 TGTAAAGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306584 9 +    378907 TGTAAAGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162101 9 + 121039945 TGTCAAGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60373715 9 + 169600520 TGTAAAGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107365056 9 - 171882078 CGTAAAGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5361868 9 -   6271500 TGTAAAGAA
i macNem1.NW_012011056v1    C 0 I 410
s cerAty1.NW_012002657v1      1823642 9 -   1987038 TGTAAAGAA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       319188 9 -   1458659 CGTAAAGAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7502011 9 -   9444221 TGTAAAGAA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031844 9 + 132174527 TGTAAAGAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529717 9 -   3282555 CATAAAGAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313969 9 -   1024465 CGTAAAGAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       759181 9 -   3745603 TGTAAAGAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 943386 9 - 119751181 TGTAAAGAA
i micMur3.chr3              I 32 C 0
s otoGar3.GL873530            6783033 9 -  36342412 TGCAAAGAA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 73758 5 -  40214260 TGTAA----
i canFam3.chr30             I 4 C 0
s dasNov3.JH569975              69842 9 -   2180720 TGTCAAAGG
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       666325 49 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I

a score=35403.000000
s hg38.chr15_KI270850v1_alt    207953 6 +    430880 CACTCA
s panTro5.chr15              18017640 6 -  83230942 TACTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243910 6 -  99763055 TACTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306593 6 +    378907 CACTCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162110 6 + 121039945 TACTCG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60373724 6 + 169600520 TACTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107365065 4 - 171882078 TACT--
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1823651 6 -   1987038 TACTCA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       319197 6 -   1458659 TACTCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7502020 6 -   9444221 TACTTA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031853 6 + 132174527 CACTTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529726 6 -   3282555 CACTAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313978 6 -   1024465 CACTCG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       759190 6 -   3745603 CACTCG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 943395 6 - 119751181 CACTTG
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6783042 6 -  36342412 CACTTG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 73763 5 -  40214260 TACTC-
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              69851 6 -   2180720 CTCTTG
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       666325 49 -   2566024 I
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5361877 410 -   6271500 I

a score=94106.000000
s hg38.chr15_KI270850v1_alt    207959 8 +    430880 AATGCCAT
s panTro5.chr15              18017646 8 -  83230942 AATGCCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243916 8 -  99763055 AATGCCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306599 8 +    378907 AATGCCAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162116 8 + 121039945 AATGCCAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60373730 8 + 169600520 AATGCCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107365069 3 - 171882078 -----CAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1823657 8 -   1987038 AATGCCAT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       319203 8 -   1458659 AATATCAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7502026 8 -   9444221 AATGCCAT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031859 8 + 132174527 AATGCCAT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529732 8 -   3282555 AATGCCAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313984 8 -   1024465 AATGCCAT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       759196 8 -   3745603 AATGCCAT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 943401 8 - 119751181 AATGCCCT
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       666374 8 -   2566024 AATGCCAT
i proCoq1.NW_012149419v1    I 49 C 0
s otoGar3.GL873530            6783048 8 -  36342412 AATCCCAT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 73768 4 -  40214260 ----CCAT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              69857 8 -   2180720 AGTACCAT
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55193894 813 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5361877 410 -   6271500 I

a score=1056411.000000
s hg38.chr15_KI270850v1_alt    207967 95 +    430880 TTAAG---------GAAATGGGTTCTTCTGCCCTGATTCTTTGGAATATTTAGGGCCACGTTTTTAGTTTTTGACATCAT-AAAAATTTCAAAGTATTCTGTTCT
s panTro5.chr15              18017654 92 -  83230942 TTAAG---------GAAATGGGTTCTTCTGCCCCTATTCTTTGGAATATTTAGGGCCAAGTTCTTAGTTTTTGA---CAT-AAAAATTTTAAAGTATTCTGTTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17243924 92 -  99763055 TTAAG---------GAAATGGGTTCTTCTGCCCCTATTCTTTGGAATATTTAGGGCCAAGTTCTTAGTTTTTGA---CAT-AAAAATTTTAAAGTATTCTGTTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306607 95 +    378907 TTAAG---------GAAATGGGTTCTTCTGCCCTGATTCTTTGGAATATTTAGGGCCACGTTTTTAGTTTTTGACATCAT-AAAAATTTCAAAGTATTCTGTTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162124 95 + 121039945 TTAAG---------GAAATGGGTTCTTCTGCCCCTATTCTTTGGAGTATTTAGGGCCACGTTCTTAGTTTTTGACATCAT-AAAAATTTGAAAGTATTCTGTTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60373738 95 + 169600520 TTAAG---------GAAATGGGTTCTTCTGCCCCTATTCTTTGGAATATTTAGGGCCAAGTTCTTAGTTTTTGACATCAT-CAAAATTTCAAAGTATTCTGTTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107365072 95 - 171882078 TGAAG---------GAAACGGGTTCTTCTGCCCTTATTCTTTGGATTATTTAGGGCCAAGTTCTTAGTTTTTGACATCAT-CAAAATTTCAAAGTATTCTGTTCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1823665 95 -   1987038 TTAAG---------GAAATGGGTTCTTCTGCCCCTGTTCTTTGGAATATTTAGGGCCAAGTTCTTAGTTTTTGACATCAT-CAAAATTTCAAAGTATTCTGTTCT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       319211 95 -   1458659 TGAAG---------GAAACGGGTTCTTCTGCCCTTATTCTTTGGATTATTTAGGGCCATGATCTTAGTTTTTGACATCAT-CAAAATTTCAAAGTATTCTGTTCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7502034 94 -   9444221 TTAAA---------GAAACGGGTTCTTCTGCCCCTATTCTTTGGAATATTTAGGGTTAAGTTCTTAGTTTTCAACATCTT-AAAAATTTCAAAGTATT-TGTTCT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031867 96 + 132174527 TTAAG---------GAAACTGGTTTTTCTGCCCCTATTCTTTGGAATATTTAGGGCTAAATTCTTAGTTACTGACATCATAAAAAATCTGAAAGTATTCTGTCCT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529740 96 -   3282555 TTAAG---------GAAACTGGTTCTTCTGCCCCTATTCTTTGGAATATTTAGGGCTAAGTTCTTAGTTACTGACATCATAAAAAATCTGAAAGTATTCTGTCCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       313992 94 -   1024465 TTAAG---------GAAACTGGTTCTTCTGCCCCTATTCTTTGGAATATTTAGGGCTAAGTTCTTAGTTACTGACATCATAAAAAATC--AAAGTATTCAGTCCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       759204 95 -   3745603 TTAAG---------GAAACTGGTTCTTCTGCCCCTATTCTTTGGAATATTTAGGGCTAAGTTCTTAGTTACTGA-ATCATAAAAAATCTGAAAGTATTCTGTCCT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 943409 94 - 119751181 TTAAG---------AAAACTGGTTCTTCTGTCCC-ATTCTTTGGAATGTTTAGGGCTAAGTTATTAGTTTCTGGTATCAT-AGAAGTCTAAAAGTATTCTGTTCT
i micMur3.chr3              C 0 I 175
s proCoq1.NW_012149419v1       666382 94 -   2566024 TTAAG---------CAAACTGGTTCTTCTTTCCC-ATTCTTTGGAATATTTAGGGCTAAGTTATTAGTTTCTGGTATCAT-AGAAGTCTAAAAGTATTCTGTTCT
i proCoq1.NW_012149419v1    C 0 I 175
s otoGar3.GL873530            6783056 94 -  36342412 TTAAG---------AAAACTGGTTCTTCTGTCCC-ATTCTTCAGAATATTTAGGGCTAAGTTCTTAGTTTCTGATATTAT-AAAAGTCTAAAAGTATTCTGTTCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55194707 90 + 124595110 TTAAG---------AAAACAGATTCTTTTGCTCCTGTTCTCTGGGATGTTTGGAGCCAAGTTTTTAATTTTTGACATCAG-AAAAGTTT---AGTATTCTGTT--
i mm10.chr9                 I 813 C 0
s canFam3.chr30                 73772 63 -  40214260 -------------------------------------TTCCTGGGATATTCAGGAGTAAGTTCCTAGTTTCTGATATCCT-TAGATT----AAGTATTCTGTCTC
i canFam3.chr30             C 0 I 1
s dasNov3.JH569975              69865 96 -   2180720 TTAAGCATAGTATTCACACTCATTTTTCTGCTCCCATTCTCTGTGATATTTAGGGCTAAGTTCTTAGTTTCTGACATC-T-GGTGGTTATAAAGTATT-------
i dasNov3.JH569975          C 0 C 0
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5361877 410 -   6271500 I

a score=569712.000000
s hg38.chr15_KI270850v1_alt    208062 85 +    430880 GATTGCCATT-----TCAAACAATTGACTGGAATTT--------CAGAGCAATTTCATAAGAGTAATACC-------ATTAGAATTTTT--AAATTACCTATAATCC
s panTro5.chr15              18017746 85 -  83230942 GATTGCCGTT-----TCAAACAATTGACTAGAATTT--------CAGAGCAATTACATGAGAGTAATACC-------ATTAGAATTTTT--AAATTACCCATAGTCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17244016 85 -  99763055 GATTGCCGTT-----TCAAACAATTGACTAGAATTT--------CAGAGCAATTACATGAGAGTAATACC-------ATTAGAATTTTT--AAATTACCCATAGTCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306702 85 +    378907 GATTGCCATT-----TCAAACAATTGACTGGAATTT--------CAGAGCAATTATGTAAGAGTAATACC-------ATTAGAATTTTT--AAATTACCTATAGTCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162219 85 + 121039945 GATTGCCATT-----TCAAACAATTGACTAGAATTT--------CAGAGCAATTACAGAAGGGTAATACC-------ATTAGGATTTTT--AAATTACCCATAGTCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60373833 83 + 169600520 A--AGGCATT-----TCAAACAATTGACTAGAATTT--------CAGAGCAATTACATGAGAGTGATAAC-------ATGAGAATTTTT--AAATTACCCATAGTCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107365167 85 - 171882078 AGGAGCCATT-----TCAAACAATTAACTAGAATTT--------CAGAGCAATTACATGAGAGTAATACC-------ATTAGAATTTTT--AAATTATCCATAGTCC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1823760 83 -   1987038 A--AGCCATT-----TCAAACAATTGACTAGAATTT--------CAGAGCAATTACATGAGAGTGATAAC-------ATGAGAATTTTT--AAATTAGCCATAGTCC
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       319306 85 -   1458659 AGGAGCCATT-----TCAAACAATTAACTAGAATTT--------CAGAGCAATTACATGAGAGTAATACC-------ATTAGAATTTTT--AAATTATCCATAGTCC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7502128 85 -   9444221 AAGAGCCATT-----TCAAACAATTGACTAGAATTT--------CAGAGCAATTACATGAGAGTAATACC-------ATTAGAATTTTT--AAATTACCCATAGTCC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18031963 85 + 132174527 AAGAACCATT-----TGAAAACATTGACTAGAATTT--------CAGAGGTATGACATTAGTGTGCTAAT-------GTTAGAATTTTT--AAATTACCCGTAGTCC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529836 85 -   3282555 AAGAACCATT-----TGAAAACATTGACTAGAATTT--------TAGAGGTATGACATTAGTGTGCTAAC-------ATTAGAATTTTT--AAATTACCCGTAGTCC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       314086 85 -   1024465 AAGAACCATT-----TGAAAACATTGACTAGAATAT--------CAGAGGTATGACATTAGCGTGCTAAC-------ATTAGAATTTTT--AAATTACCCGTAGTCC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       759299 85 -   3745603 AAGAACCATT-----TGAAAACATTGACTAGAATTT--------CAGAGGTATGACATTAGCGTGCTAAT-------ATTAGAATTTTT--AAATTACCCGTAGTCC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6783150 74 -  36342412 AAGAACCATTAATACTTTAAGAATTAACTAGATGT------------------------AGAGTGATAAC-------ATTAAAATGTTT--AAATTACCTGTATTTC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55194797 66 + 124595110 --------------------CAACTTATTTGA------------CAAGTTGATTATATTAGAGTAATGAC-------TATAAACATTTG--AAATTGGCCGCAGTCT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 73836 73 -  40214260 AAGAACTATT-----T-------TTTTTTTTAATT----------AAGACAGTTAT---AAAGCAATGAC-------ATTAGAATTGTT--TAACTATCCTTAGTCC
i canFam3.chr30             I 1 C 0
s dasNov3.JH569975              69961 99 -   2180720 --TTGCTACT-----AAGAACCATTG-TTGGACttttttatatgtatatttttttaattaaGGCTTTATCAGAGCAAATTAGAATTTTTTGAAATCACCCACGGTCC
i dasNov3.JH569975          C 0 I 489
e micMur3.chr3                 943503 175 - 119751181 I
e proCoq1.NW_012149419v1       666476 175 -   2566024 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5361877 410 -   6271500 I

a score=818968.000000
s hg38.chr15_KI270850v1_alt    208147 107 +    430880 TATATGCCTAACAAGTATGTTCATGCT-TACGTGTTCTCTTCTTGTCTTTAC-TGTGTGCATACTTTCTTAATAATGCCAC-ATGGAAATTGTTTAAGCAGGAATACTTC
s panTro5.chr15              18017831 107 -  83230942 TATATGCCTAACAAGTATGTTCATGCT-TACGTGTTCTCTTCTTATCTTTAC-TGTGTGCCTACTTTCTTAATAATGCCAC-ATGGAAATTGTTTAAGCAGGAATACTCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17244101 107 -  99763055 TATATGCCTAACAAGTATGTTCATGCT-TACGTGTTCTCTTCTTATCTTTAC-TGTGTGCCTACTTTCTTAATAATGCCAC-ATGGAAATTGTTTAAGCAGGAATACTCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306787 107 +    378907 TATATGCCTAACAAGTATGTTCATGCT-TACATGTTCTCTTCTTGTCTTTAC-TGTGTGCATACTTTCTTAATAATGCCAC-ATGGAAATTGTTTAAGCAGGAATACTTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162304 102 + 121039945 TATATCCCTAACAAGTATGTTCATGCT-TGCGTG-----TTCTTATCTTTAC-TGTGTGCATACTTTCTTAATAATGCCAC-GTGGAAATTGCTTAAGCAGGAATAATTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60373916 106 + 169600520 TATATCCCTAACAAGTATGTTCATGCT-TGCATGTTCTCTTTTGATCTTTAC-TGTGTGCATACTTTCTTAGTAATGGCA--GTAGAACTTGTTTAAGCAGGAATAATTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107365252 107 - 171882078 TATATCCCTAACAAGTATGTTCATGCT-TGCATATTCTCTTCTTATCTTTAC-TTTGTGTGTACTTTCTTAATAATGGCAC-ATAGAAATTGTTTAAGCAGGAATAATTC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1823843 106 -   1987038 TATATCCCTAACAAGTATGTTCATGCT-TGCATGTTCTCTTCTGATCTTTAC-TGTGTGCATACTTTCTTAGTAATGGCA--GTAGAACTTGTTTAAGCAGGAATAATTC
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       319391 107 -   1458659 TATATCCTTAACAAGTATGTTCATGCT-TGCATATTCTCTTCTTATCTTTAC-TTTGTGCGTACTTTCTTAATAATGGCAC-ATAGAAATTGTTTAAGCAGGAATAACTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7502213 107 -   9444221 TATATCCCGAACAAGTATGTTCATGTT-TGCATGTTCTCTTCTCATCTTTAC-TGTGTGTATACTTCCTTAGTAATGGCAC-ATGGAAATTGTTTAAGCAAGGATAATTC
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18032048 108 + 132174527 TGTATCCCTAACAACTGTTTGCATGTT-TACATGGTATTTTCTCATCTTTACTTGTGTGTGTATTTTCTTAGTAATGGCAC-TTAGAAATTGTTTAAGGAAGAATAATTC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             529921 108 -   3282555 TGTATCCCTAAGAACTGTTTGCATGTT-TACATGGTATTTTCTCATCTTTACTTGTGTGCGTATTTTCTTAGTAATGGCAC-TTAGAAATTGTTTAAGGAAGAATAATTC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       314171 108 -   1024465 TGTATCCCTAACAACTGTTTGCATGTT-TACATGGTATTTTCTCATCTATACTTGTGTGCGTATTTTCTTAGTAATGGCAC-TTAGAAATTGTTTAAGGAAGAATAATTC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       759384 108 -   3745603 TGTATCCCTAACAACTGTTTGCATGTT-TACATGGTATTTTCTCATCTTTACTTGTGTGCGTATTTTCTTAGTAATGGCAC-TTAGAAATTGTTTAAGGAAGAATAATTC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6783224 108 -  36342412 TATATCCCTAACAGTAGTTTTCATTTTCTGCATGTTATCGTCTAATCTTTAC-TTAGC-TATACTTTCTAAGTAATGGCACTTTAAAAATGGTTGAAGAAAGAATATTGA
i otoGar3.GL873530          C 0 I 2
s mm10.chr9                  55194863  84 + 124595110 TATGTCTCTAACAACAGTTTTTATTTT-GGTATATTATCTTCTAATTT-----TGTGTGAGTACTGTCTTAGTAATG-TAC-TTAAGTATTT------------------
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 73909  99 -  40214260 TGGAACCCTAACCACTATTCTCATTTT-TGGATGTTATCTTCTAACCTTGACTTGTATGTA---TTCCTAAGTGGTGGTAC-TTTAAA------TAAAAAGGAACGCTGA
i canFam3.chr30             C 0 I 2
s dasNov3.JH569975              70549  98 -   2180720 TATAACCCTAAGAATGGTTTTCATTTT-TGCAT-----CTTCTGATCTTTACTTATAGGCATACTTTCTTAGTAAT------TTTAAAATTTAATAAGAAAGAATACATA
i dasNov3.JH569975          I 489 I 2
e micMur3.chr3                 943503 175 - 119751181 I
e proCoq1.NW_012149419v1       666476 175 -   2566024 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5361877 410 -   6271500 I

a score=1004611.000000
s hg38.chr15_KI270850v1_alt    208254  77 +    430880 TCAAG-------------------------ATAATTTTGTATG-TTTCCTTTTTTCTTTTT-AAGGTATGTATTGGGTGGAGGAGCATTATGTATGGAACCTCT
s panTro5.chr15              18017938  77 -  83230942 TCAAG-------------------------ATAATTTTGTATG-TTTCCTTTTTTCTTTTT-AAGGTATGTGTTGGGTGGAGGAGCATTATATATGGAACCTCT
i panTro5.chr15             C 0 I 9
s panPan2.chr15              17244208  77 -  99763055 TCAAG-------------------------ATAATTTTGTATG-TTTCCTTTTTTCTTTTT-AAGGTATGTGTTGGGTGGAGGAGCATTATATATGGAACCTCT
i panPan2.chr15             C 0 I 9
s gorGor5.CYUI01015946v1       306894  77 +    378907 TCAAG-------------------------ATAATTTTGTATG-TTTCCTTTTTTCTTTTT-AAGGTATGTATTGGGTGGAGGAGCATTATGTATGGAACCTCT
i gorGor5.CYUI01015946v1    C 0 I 9
s nomLeu3.chr6              102162406  77 + 121039945 TCAAG-------------------------ATAATTTTGTATG-TTTCCTTTTTTCTTTTT-AAGGTATGTGTTGGGTGGAGGAGCATTATGTATGGAACCTCT
i nomLeu3.chr6              C 0 I 9
s rheMac8.chr7               60374022  75 + 169600520 TTGAG-------------------------ATAATTT--TTTG-TTTCCTTTTTTCTTTTT-AAGGTATGTATTGGGTGGAGGAGCATTATATATGGAACTTCT
i rheMac8.chr7              C 0 I 9
s macFas5.chr7              107365359  77 - 171882078 TCAAG-------------------------ATAATTTTATATG-TTTCCTTTTTTCTTTTT-AAGGTATATATTGGGTGAAGGAGCATTATGTATGGAACCTCT
i macFas5.chr7              C 0 I 9
s cerAty1.NW_012002657v1      1823949  77 -   1987038 TCGAG-------------------------ATAATTTTGTATG-TTTCCTTTTTTCTTTTT-AAGGTATGTGTTGGGTGGAGGAGCATTATATATGGAACTTCT
i cerAty1.NW_012002657v1    C 0 I 9
s manLeu1.NW_012105520v1       319498 102 -   1458659 TCATGTTATTATATGAGAgtttatatgtttatatgtttatatg-tttCCTTTTTTCTTTTT-AAGGTATATATTGGGTGAAGGAGCATTATGTATGGAACCTCT
i manLeu1.NW_012105520v1    C 0 I 9
s colAng1.NW_012112253v1      7502320  77 -   9444221 TTGAG-------------------------ATAAATTTGTATG-TTTCCTTTTTTCTTTTT-AAGGTATGTATCGGGTAGAGGAGCATTATGTATGGAACGCTG
i colAng1.NW_012112253v1    C 0 I 9
s calJac3.chr10              18032156  75 + 132174527 TCAAG---------------------------AATTTCGTGTG-ATTACTTTTTTCTTTTT-AAGGTATGTATTGGGTGGAGGAGCATTATGTATGGAACTTCT
i calJac3.chr10             C 0 I 9
s saiBol1.JH378276             530029  75 -   3282555 TCAAG---------------------------AATTTCATGTG-ATTACTTTTTTCTTTTT-AAGGTATGTATTGGGTGGAGGAGCATTATGTATGGAACTTCT
i saiBol1.JH378276          C 0 I 9
s cebCap1.NW_016107979v1       314279  75 -   1024465 TCAAG---------------------------AATTTTGTGTG-ATTACTTTTTTCTTTTT-AAGGTATGTATTGGGTGGAGGAGCATTATGTATGGAACTTCT
i cebCap1.NW_016107979v1    C 0 I 9
s aotNan1.NW_018511953v1       759492  75 -   3745603 TCAAG---------------------------AATTTTGTGTG-ATTACTTTTTTCTTTTT-AAGGTATGTATTGGGTGGAGGAGCATTATGTATGGAACTTCT
i aotNan1.NW_018511953v1    C 0 I 9
s micMur3.chr3                 943678  76 - 119751181 TCAAG-------------------------AGAATTTTGTATG-ATT-CTTTTTTCTTTTT-AAGGTATGTGTTGGGTGGAGGAGCATTATGTATGGAACTTCT
i micMur3.chr3              I 175 I 163
s proCoq1.NW_012149419v1       666651  77 -   2566024 TCAAG-------------------------AGAATTTTGTATG-ATTCCTTTTTTCTTTTT-AAGGTACGTGTTGGGTGGAGGAGCATTATGTATGGAACTTCT
i proCoq1.NW_012149419v1    I 175 I 158
s otoGar3.GL873530            6783334  76 -  36342412 TAAAG-------------------------AGAAATTCATATG-GTC-CTTTTTTCTTTTT-AAGGTACGTCTTGGGTGGAGGAGCATTATGTATGGAACTTCT
i otoGar3.GL873530          I 2 I 9
s mm10.chr9                  55194947  78 + 124595110 TAAGG-------------------------AGGATTTTGTATG-CTTGCTTTCCTTTTTTTAAAGGTATGTGTTGGGTGGAGGAGCACTTTGTATGGAACTTCT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 74010  78 -  40214260 TTTAG-------------------------AGAATTAAATATGATTTCCTTTTCTCTTTTT-AAGGTATGTGTTGGGTGGTGGAGCACTATGTATGGAACTTCT
i canFam3.chr30             I 2 I 9
s dasNov3.JH569975              70649  74 -   2180720 TGTAG-------------------------AGAATTTTATATA-ATT---GTCTTCTTTTA-AAGGTACGTGTTGGGTGGAGGAGCATTATGTATGGAACTACT
i dasNov3.JH569975          I 2 I 9
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5361877 410 -   6271500 I

a score=63393.000000
s hg38.chr15_KI270850v1_alt    208331 5 +    430880 GGTGA
s panTro5.chr15              18018024 5 -  83230942 GGTGA
i panTro5.chr15             I 9 C 0
s panPan2.chr15              17244294 5 -  99763055 GGTGA
i panPan2.chr15             I 9 C 0
s gorGor5.CYUI01015946v1       306980 5 +    378907 GGTGA
i gorGor5.CYUI01015946v1    I 9 C 0
s nomLeu3.chr6              102162492 5 + 121039945 GGTGA
i nomLeu3.chr6              I 9 C 0
s rheMac8.chr7               60374106 5 + 169600520 GGTGA
i rheMac8.chr7              I 9 C 0
s macFas5.chr7              107365445 5 - 171882078 GGTGA
i macFas5.chr7              I 9 C 0
s cerAty1.NW_012002657v1      1824035 5 -   1987038 GGTGA
i cerAty1.NW_012002657v1    I 9 C 0
s manLeu1.NW_012105520v1       319609 5 -   1458659 GGTGA
i manLeu1.NW_012105520v1    I 9 C 0
s colAng1.NW_012112253v1      7502406 5 -   9444221 GGTGA
i colAng1.NW_012112253v1    I 9 C 0
s calJac3.chr10              18032240 5 + 132174527 GGTGA
i calJac3.chr10             I 9 C 0
s saiBol1.JH378276             530113 5 -   3282555 GGTGA
i saiBol1.JH378276          I 9 C 0
s cebCap1.NW_016107979v1       314363 5 -   1024465 GGTGA
i cebCap1.NW_016107979v1    I 9 C 0
s aotNan1.NW_018511953v1       759576 5 -   3745603 GGTGA
i aotNan1.NW_018511953v1    I 9 C 0
s otoGar3.GL873530            6783419 5 -  36342412 GGTGA
i otoGar3.GL873530          I 9 C 0
s mm10.chr9                  55195025 5 + 124595110 CACAA
i mm10.chr9                 C 0 I 1
s canFam3.chr30                 74097 5 -  40214260 GGTGA
i canFam3.chr30             I 9 I 1
s dasNov3.JH569975              70732 5 -   2180720 GGTGA
i dasNov3.JH569975          I 9 C 0
e micMur3.chr3                 943754 163 - 119751181 I
e proCoq1.NW_012149419v1       666728 158 -   2566024 I
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5361877 410 -   6271500 I

a score=608149.000000
s hg38.chr15_KI270850v1_alt    208336 69 +    430880 TTATTTTATTAT-TATACTCAA--TTTTCACCCT--CAATAGAGTGTTTTGATTATG-TAAGTTAGAT-----CGTAAGT
s panTro5.chr15              18018029 69 -  83230942 TTATTTTCTTAT-TATACTCAA--TTTTCACCCT--GAATAGAGTGTTTTGATTATG-TAAGTTAGAT-----CGTAAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17244299 69 -  99763055 TTATTTTCTTAT-TATACTCAA--TTTTCACCCT--GAATAGAGTGTTTTGATTATG-TAAGTTAGAT-----CGTAAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       306985 69 +    378907 TTATTTTATTAT-TATACTCAA--TTTTCACCCT--CAATAGAGTGTTTTGATTATG-TAAGTTAGAT-----CGTAAGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162497 69 + 121039945 TTATTTTCTTAT-CATACTCCA--TTTTTACTCT--CAATAGAGTGTTTTGATTATG-TAAGTTAGAT-----CGTAAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374111 69 + 169600520 TTATTTTCTTAT-AATACTCAA--TTTTCACCCT--CAATAGAGTGTTTTGATTATG-TAAGTTAGAT-----CATAAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107365450 69 - 171882078 TTATTTTCTTAT-AATACTCAG--TTTTCACACG--CAATAGAGTGTTTTGATTATG-TAAGTTAGAT-----GGTAAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5362287 74 -   6271500 TTATTTTCTTAT-AATACTCAA---TTTCACTCT--CAAGAGAGTGTTTTGATTATGCTAAGTTAGATCAATGAGTAGGG
i macNem1.NW_012011056v1    I 410 C 0
s cerAty1.NW_012002657v1      1824040 69 -   1987038 TTATTTTCTTAT-AATACTCAA--TTTTCACCCT--CAATAGAGTGTTTTGATTATG-TAAGTTAGAT-----CATAAGT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       319614 65 -   1458659 TTATTTTCTTAT-AATACTCAA--TTTTCACACG--CAAT--AGTGTTTTGATTATG-TAAGTTAGAT-----GGTAA--
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7502411 69 -   9444221 TTATTTTCTTAT-AATACTCAA--TTTTCACCCT--CAATAGAGTGTTTTGATTATG-TAAGTTAGAT-----TGTAAGT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18032245 67 + 132174527 --ATTTTCTTAC-GGTACTCCA--TTTTCACCCT--CAATTTAGTGTTTTGGTAATG-TAAATTAGAT-----TGTAAGT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             530118 67 -   3282555 --ATTTTCTTAT-GGTACTCCA--TTTTCACCCT--CAATTTAGTGTTTTGATAATG-TAAATTAGAT-----TGTAAGT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       314368 67 -   1024465 --ATTTTCTTAT-GGTACTCCA--TTTTAACCCT--CAATTTAGTGTTTTGATAATG-TAAATTAGAT-----CGTAAGT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       759581 67 -   3745603 --ATTTTCTTAT-GGTACTCCA--TTTTCACCCT--CAATTTAGTGTTTTGATAATG-TAAATTAGAT-----TGTAAGT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6783424 67 -  36342412 -TATTTTCTTATGGGTGCTCAG--TTGTCAATTT--CAAT--AATGTTTTGATTATG-TAAATTAGAG-----TCTAAAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55195031 68 + 124595110 ACAGGTAACTCT-TGTGTACAG--TTCTTAGCCT--TAGTGGACTATTTT-CCTAGA-TAAGATGGAT-----TCTAAGA
i mm10.chr9                 I 1 C 0
s canFam3.chr30                 74103 72 -  40214260 TGGTTTTCTTGT-GGTACTCCTGTTTTTCAATTT--CGGTGGAGTGTTTTGATGATGTTAAATTAGAT-----TCTGAGT
i canFam3.chr30             I 1 I 73
s dasNov3.JH569975              70737 71 -   2180720 CTGTTTTCTTAT-ATAAAACTG--TTTTTCTTATAGCATTCATTTATTTTGATTATA-TAAATTATAT-----ACTGAAT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 943754 163 - 119751181 I
e proCoq1.NW_012149419v1       666728 158 -   2566024 I
e chlSab2.chr29              21074217 218 -  24206276 I

a score=29149.000000
s hg38.chr15_KI270850v1_alt    208405 3 +    430880 AGA
s panTro5.chr15              18018098 3 -  83230942 AGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17244368 3 -  99763055 AGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       307054 3 +    378907 AGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162566 3 + 121039945 AGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374180 3 + 169600520 AGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107365519 3 - 171882078 AGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5362361 3 -   6271500 ACG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1824109 3 -   1987038 AGA
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7502480 3 -   9444221 AGA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18032312 3 + 132174527 AGA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             530185 3 -   3282555 AGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       314435 3 -   1024465 AGA
i cebCap1.NW_016107979v1    C 0 I 69
s aotNan1.NW_018511953v1       759648 3 -   3745603 AGA
i aotNan1.NW_018511953v1    C 0 I 69
s otoGar3.GL873530            6783491 3 -  36342412 AGA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55195099 3 + 124595110 GGA
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              70808 3 -   2180720 GGA
i dasNov3.JH569975          C 0 I 2
e micMur3.chr3                 943754 163 - 119751181 I
e proCoq1.NW_012149419v1       666728 158 -   2566024 I
e canFam3.chr30                 74175 73 -  40214260 I
e manLeu1.NW_012105520v1       319679 0 -   1458659 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=5753.000000
s hg38.chr15_KI270850v1_alt    208408  7 +    430880 CGGTT------------------CT
s panTro5.chr15              18018101  7 -  83230942 TGGCT------------------AT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17244371  7 -  99763055 TGGCT------------------CT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       307057  7 +    378907 CGGTT------------------CT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162569  7 + 121039945 CGGTT------------------CT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374183  7 + 169600520 AGGTT------------------CT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107365522  7 - 171882078 AGGTT------------------CT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5362364  7 -   6271500 GTGTA------------------TC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1824112  7 -   1987038 AGGTT------------------CT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       319679  5 -   1458659 --GTT------------------CT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7502483  7 -   9444221 AGGTT------------------CT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18032315 25 + 132174527 AAGTTCTTCTGTAATAGTTCCTACT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             530188 25 -   3282555 AAGTTCTTTTATAATAGCTCTTACT
i saiBol1.JH378276          C 0 C 0
s mm10.chr9                  55195102  7 + 124595110 AAGAT------------------CT
i mm10.chr9                 C 0 I 35
s dasNov3.JH569975              70813  7 -   2180720 AGGTG------------------TT
i dasNov3.JH569975          I 2 I 16
e micMur3.chr3                 943754 163 - 119751181 I
e proCoq1.NW_012149419v1       666728 158 -   2566024 I
e aotNan1.NW_018511953v1       759651 69 -   3745603 I
e canFam3.chr30                 74175 73 -  40214260 I
e cebCap1.NW_016107979v1       314438 69 -   1024465 I
e otoGar3.GL873530            6783494  0 -  36342412 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=77760.000000
s hg38.chr15_KI270850v1_alt    208415 23 +    430880 CTTAAAGACATTTTAGTG---TTTTT
s panTro5.chr15              18018108 23 -  83230942 CTTAAAGACATTTTAGTG---GTTtt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17244378 23 -  99763055 CTTAAAGACATTTTAGTG---GTTtt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       307064 23 +    378907 CTTAAAGACATTTTAGTG---TTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162576 22 + 121039945 CTTAAAGACA-TGTAGTG---gtttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374190 23 + 169600520 CTTAAAGACATTTTAGTG---TTTTT
i rheMac8.chr7              C 0 I 5
s macFas5.chr7              107365529 26 - 171882078 CTTAAAGACATTTTAGTGGGTTTTTT
i macFas5.chr7              C 0 I 13
s macNem1.NW_012011056v1      5362371 21 -   6271500 TCTAAAGACGTTTTAG-----TTTTT
i macNem1.NW_012011056v1    C 0 I 3
s cerAty1.NW_012002657v1      1824119 23 -   1987038 CTTAAAGACATTTTAGTG---TTttt
i cerAty1.NW_012002657v1    C 0 I 41
s manLeu1.NW_012105520v1       319684 25 -   1458659 CTTAAAGACATTTTAGTGGG-TTTTT
i manLeu1.NW_012105520v1    C 0 I 14
s colAng1.NW_012112253v1      7502490 18 -   9444221 CTTAAAGAAATTTTAGTG--------
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18032340 18 + 132174527 CTTAAAGAAATTTTAGTT--------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             530213 18 -   3282555 CTTAAAGAAATTTTAGTT--------
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6783494  4 -  36342412 ---AAAG-------------------
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              70836 15 -   2180720 CTTAAAACTATTTTA-----------
i dasNov3.JH569975          I 16 C 0
e micMur3.chr3                 943754 163 - 119751181 I
e proCoq1.NW_012149419v1       666728 158 -   2566024 I
e aotNan1.NW_018511953v1       759651 69 -   3745603 I
e mm10.chr9                  55195109 35 + 124595110 I
e canFam3.chr30                 74175 73 -  40214260 I
e cebCap1.NW_016107979v1       314438 69 -   1024465 I
e chlSab2.chr29              21074217 218 -  24206276 I

a score=111600.000000
s hg38.chr15_KI270850v1_alt    208438 30 +    430880 TT------------------TTTTTTTCGTAGCTCCTACTTTCAAGAA-
s panTro5.chr15              18018131 46 -  83230942 ttgtttgtt--ttgttttgcttttttctgtAGCTCCTACTTTCAAGAA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17244401 46 -  99763055 ttgtttgtt--ttgttttgcttttttctgtAGCTCCTACTTTCAAGAA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       307087 31 +    378907 TT-----------------TTTTTTTTCGTAGCTCCTACTTTCAAGAA-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162598 48 + 121039945 ttttttgtttgtttgtttttgttttttcgtAGCTCCTACTTTCAAGAA-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374218 28 + 169600520 ------------------TTTGTT--TTGTAGCTCCTACTTTCAAGAA-
i rheMac8.chr7              I 5 C 0
s macFas5.chr7              107365568 30 - 171882078 ------------------TTTTTTCTTCATAGCTCCTACTTTCAAGAA-
i macFas5.chr7              I 13 C 0
s macNem1.NW_012011056v1      5362395 30 -   6271500 ------------------TTTTTTCATAGGAGCTCCTACTTTCAAGAA-
i macNem1.NW_012011056v1    I 3 C 0
s manLeu1.NW_012105520v1       319723 30 -   1458659 ------------------TTTTTTCTTCATAGCTCCTACTTTCAAGAA-
i manLeu1.NW_012105520v1    I 14 C 0
s colAng1.NW_012112253v1      7502508 30 -   9444221 ------------------TTTTTTTTTCATAGCTCCTACTTTCAAGAA-
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18032358 30 + 132174527 ------------------TATTTTTTATATAGCTCCTACTTTCAAGAA-
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             530231 30 -   3282555 ------------------TATTTTTTAAATAGCTCCTACTTTCAAGAA-
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            6783498 30 -  36342412 ------------------TTCTTATGTAGTAGCACCTCCCTTAAAAAA-
i otoGar3.GL873530          C 0 I 30
s dasNov3.JH569975              70851 29 -   2180720 --------------------TTTTAAAAATAGCACCTGTTTTTTAATAA
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 943754 163 - 119751181 I
e proCoq1.NW_012149419v1       666728 158 -   2566024 I
e aotNan1.NW_018511953v1       759651 69 -   3745603 I
e mm10.chr9                  55195109 35 + 124595110 I
e canFam3.chr30                 74175 73 -  40214260 I
e cebCap1.NW_016107979v1       314438 69 -   1024465 I
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1824142 41 -   1987038 I

a score=62119.000000
s hg38.chr15_KI270850v1_alt    208468 10 +    430880 TGAAAAAGGT-
s panTro5.chr15              18018177 10 -  83230942 TGAAAAAGGT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17244447 10 -  99763055 TGAAAAAGGT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       307118 10 +    378907 TGAAAAAGGT-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162646 10 + 121039945 TGAAAAAGGT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374246 10 + 169600520 TGAAAAAGGT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107365598 10 - 171882078 TGAAAAAGGT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5362425 10 -   6271500 TGAAAAAGGT-
i macNem1.NW_012011056v1    C 0 C 0
s manLeu1.NW_012105520v1       319753 10 -   1458659 TGAAAAAGGT-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7502538 10 -   9444221 TGAAAAAAGT-
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18032388 10 + 132174527 TGAAAAAGGT-
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             530261 10 -   3282555 TGAAAAAGGT-
i saiBol1.JH378276          C 0 C 0
s dasNov3.JH569975              70880 10 -   2180720 -GGAAAAAGTT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 943754 163 - 119751181 I
e proCoq1.NW_012149419v1       666728 158 -   2566024 I
e aotNan1.NW_018511953v1       759651 69 -   3745603 I
e mm10.chr9                  55195109 35 + 124595110 I
e canFam3.chr30                 74175 73 -  40214260 I
e cebCap1.NW_016107979v1       314438 69 -   1024465 I
e otoGar3.GL873530            6783528 30 -  36342412 I
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1824142 41 -   1987038 I

a score=10152.000000
s hg38.chr15_KI270850v1_alt    208478 3 +    430880 atc
s panTro5.chr15              18018187 3 -  83230942 atc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17244457 3 -  99763055 atc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       307128 3 +    378907 atc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162656 3 + 121039945 atc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107365608 3 - 171882078 atc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5362435 3 -   6271500 atc
i macNem1.NW_012011056v1    C 0 C 0
s manLeu1.NW_012105520v1       319763 3 -   1458659 atc
i manLeu1.NW_012105520v1    C 0 C 0
s dasNov3.JH569975              70890 3 -   2180720 ATC
i dasNov3.JH569975          C 0 I 1
e micMur3.chr3                 943754 163 - 119751181 I
e proCoq1.NW_012149419v1       666728 158 -   2566024 I
e aotNan1.NW_018511953v1       759651 69 -   3745603 I
e mm10.chr9                  55195109 35 + 124595110 I
e calJac3.chr10              18032398 0 + 132174527 C
e canFam3.chr30                 74175 73 -  40214260 I
e cebCap1.NW_016107979v1       314438 69 -   1024465 I
e otoGar3.GL873530            6783528 30 -  36342412 I
e colAng1.NW_012112253v1      7502548 0 -   9444221 C
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1824142 41 -   1987038 I
e rheMac8.chr7               60374256 0 + 169600520 C
e saiBol1.JH378276             530271 0 -   3282555 C

a score=509841.000000
s hg38.chr15_KI270850v1_alt    208481 240 +    430880 ccagcagtttgggaggctgaggcaggcggatcacgaggtcaagagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaaatac--aaaaaaaatagccgggcgtgatggcgggtgactgtagtcccagcta--------------------------------cccgggaggctgaggcaggagaattgtgtgaacccgggaggcagagcttgcagtgagctgagatggtgccaccgcactccagcctgggtgacagagc
s panTro5.chr15              18018190 240 -  83230942 ccagcagtttgggaggctgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctttactaaaaaatac--aaaaaaattagccaggcgtgatggcgggcgactgtagtcccagcta--------------------------------ctcgggaggctgaggcaggagaatggcgtgaacccgggagacagagcttgcagtgagctgagatggtgccactgcactccagcctgggtgacagagt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17244460 239 -  99763055 ccagcagtttgggaggctgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctttgctaaaaaatac---aaaaaattagccaggcgtgatggcgggcgactgtagtcccagcta--------------------------------ctcgggaggctgaggcaggagaatggcgtgaacccgggaggcagagcttgcagtgagctgagatggtgccactgcactccagcctgggtgacagagt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       307131 240 +    378907 ccagcagtttgggaggctgaggcaggcagatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaaatac--aaaaaaaatagccgggcgtgatggcgggcgactgtagtcccagcta--------------------------------cccgggaggctgaggcaggagaatggtgtgaacccgggaggcagagcttgcagtgagctgagatggtgccaccgcactccagcctgggtgacagagc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162659 242 + 121039945 ccagcagtttgggaggctgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaaatacaaaaaaaaatcagccgggtgtgatggcgggcgcctgtagtcccagcta--------------------------------ctcaggaggctgaggcaggagaatggcgtgaacctgggaggcagagcttgcagtgagtggagatggcgccactgcactccagcctgggtgacagagt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107365611 274 - 171882078 ccagcactttgggaggccaaggtggatggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccgcgtctctactaaaaaaatagaaaaaaaattagctgggcgtgatggcagactcctgtagtcccagtagtagagtcaaccacttttaggcagccccccgtacttgggaggctgaggcaggagagtggcatgaacctgggagacagagcttgcagtgagctgagatggtaccactgcactccagcctgggcaactgagt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5362438 239 -   6271500 ccagcactttgggaggcccgggccggcagatcacaaggtcaggagatcgagaccatcctgaccaacatggcgaaaccccatctctactaaaaaaat---acaaaatttagctaggcatggtggcgggcgcctgtagtcccagcat--------------------------------ctcgggaggcttaggcaggagaatggcatgaacccaggaggtggagcttgcagagagccaacatggcgccactgcactgcagtctgggagacagagc
i macNem1.NW_012011056v1    C 0 I 18
s manLeu1.NW_012105520v1       319766 274 -   1458659 ccagcactttgggaggccaaggtggatggatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccacgtctctactaaaaaaatagaaaaaaaattagctgggcgtgatggcagactcctgtagtcccagtagtagagtcaaccacttttaggcagccccccgtacttgggaggctgaggcaggagagtggcatgaacctgggagacagagcttgcagtgagctgagatagtaccactgcactccagcctgggcaactgagt
i manLeu1.NW_012105520v1    C 0 C 0
e micMur3.chr3                 943754 163 - 119751181 I
e proCoq1.NW_012149419v1       666728 158 -   2566024 I
e aotNan1.NW_018511953v1       759651  69 -   3745603 I
e mm10.chr9                  55195109  35 + 124595110 I
e calJac3.chr10              18032398   0 + 132174527 C
e dasNov3.JH569975              70893   1 -   2180720 I
e canFam3.chr30                 74175  73 -  40214260 I
e cebCap1.NW_016107979v1       314438  69 -   1024465 I
e otoGar3.GL873530            6783528  30 -  36342412 I
e colAng1.NW_012112253v1      7502548   0 -   9444221 C
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1824142  41 -   1987038 I
e rheMac8.chr7               60374256   0 + 169600520 C
e saiBol1.JH378276             530271   0 -   3282555 C

a score=16626.000000
s hg38.chr15_KI270850v1_alt    208721 9 +    430880 aagactcca
s panTro5.chr15              18018430 9 -  83230942 gagactcca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17244699 9 -  99763055 gagactcca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       307371 9 +    378907 gagactcca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162901 9 + 121039945 gagactcca
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107365885 9 - 171882078 gagactcca
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       320040 9 -   1458659 gagactccg
i manLeu1.NW_012105520v1    C 0 C 0
e micMur3.chr3                 943754 163 - 119751181 I
e proCoq1.NW_012149419v1       666728 158 -   2566024 I
e aotNan1.NW_018511953v1       759651 69 -   3745603 I
e mm10.chr9                  55195109 35 + 124595110 I
e calJac3.chr10              18032398 0 + 132174527 C
e dasNov3.JH569975              70893 1 -   2180720 I
e canFam3.chr30                 74175 73 -  40214260 I
e cebCap1.NW_016107979v1       314438 69 -   1024465 I
e otoGar3.GL873530            6783528 30 -  36342412 I
e colAng1.NW_012112253v1      7502548 0 -   9444221 C
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1824142 41 -   1987038 I
e macNem1.NW_012011056v1      5362677 18 -   6271500 I
e rheMac8.chr7               60374256 0 + 169600520 C
e saiBol1.JH378276             530271 0 -   3282555 C

a score=9363.000000
s hg38.chr15_KI270850v1_alt    208730 36 +    430880 tctcaaaaaaacaaaacaaaacaaaacaaaaaaaac----
s panTro5.chr15              18018439 20 -  83230942 tctcaaaaaaa----------------aaaaaaaaa----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17244708 18 -  99763055 tct--acaaaa----------------aaaaaaaaa----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       307380 18 +    378907 tct--caaaaa----------------aaaaaaaac----
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162910 32 + 121039945 tctcaaaaaaa----aaaaaaaaaaaaaaaaaaaaa----
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107365894 20 - 171882078 tctcaaaataa----------------ataaataaa----
i macFas5.chr7              C 0 I 9
s manLeu1.NW_012105520v1       320049 20 -   1458659 tctcagaataa----------------ataaataaa----
i manLeu1.NW_012105520v1    C 0 I 5
s otoGar3.GL873530            6783558 24 -  36342412 TCTTAATGAAA----------------GAAAACTATTCAA
i otoGar3.GL873530          I 30 C 0
e micMur3.chr3                 943754 163 - 119751181 I
e proCoq1.NW_012149419v1       666728 158 -   2566024 I
e aotNan1.NW_018511953v1       759651 69 -   3745603 I
e mm10.chr9                  55195109 35 + 124595110 I
e calJac3.chr10              18032398  0 + 132174527 C
e dasNov3.JH569975              70893  1 -   2180720 I
e canFam3.chr30                 74175 73 -  40214260 I
e cebCap1.NW_016107979v1       314438 69 -   1024465 I
e colAng1.NW_012112253v1      7502548  0 -   9444221 C
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1824142 41 -   1987038 I
e macNem1.NW_012011056v1      5362677 18 -   6271500 I
e rheMac8.chr7               60374256  0 + 169600520 C
e saiBol1.JH378276             530271  0 -   3282555 C

a score=26395.000000
s hg38.chr15_KI270850v1_alt    208766 9 +    430880 aGAATGAAA
s panTro5.chr15              18018459 9 -  83230942 agaatgaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17244726 9 -  99763055 aagatgaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       307398 9 +    378907 agaatgaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162942 9 + 121039945 aaaaaGGAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107365923 9 - 171882078 aaaataaaA
i macFas5.chr7              I 9 C 0
s cerAty1.NW_012002657v1      1824183 9 -   1987038 AGAATGAAA
i cerAty1.NW_012002657v1    I 41 C 0
s manLeu1.NW_012105520v1       320074 9 -   1458659 aaaattaaa
i manLeu1.NW_012105520v1    I 5 C 0
s cebCap1.NW_016107979v1       314507 9 -   1024465 AGAACGAAA
i cebCap1.NW_016107979v1    I 69 C 0
s aotNan1.NW_018511953v1       759720 9 -   3745603 AGAATGAAA
i aotNan1.NW_018511953v1    I 69 C 0
e micMur3.chr3                 943754 163 - 119751181 I
e proCoq1.NW_012149419v1       666728 158 -   2566024 I
e mm10.chr9                  55195109 35 + 124595110 I
e calJac3.chr10              18032398 0 + 132174527 C
e dasNov3.JH569975              70893 1 -   2180720 I
e canFam3.chr30                 74175 73 -  40214260 I
e otoGar3.GL873530            6783582 0 -  36342412 C
e colAng1.NW_012112253v1      7502548 0 -   9444221 C
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5362677 18 -   6271500 I
e rheMac8.chr7               60374256 0 + 169600520 C
e saiBol1.JH378276             530271 0 -   3282555 C

a score=41236.000000
s hg38.chr15_KI270850v1_alt    208775 5 +    430880 AAGGC
s panTro5.chr15              18018468 5 -  83230942 aaGGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17244735 5 -  99763055 aaGGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       307407 5 +    378907 aaGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162951 5 + 121039945 AAGGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              107365932 5 - 171882078 AACAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1824192 5 -   1987038 AAGGT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       320083 5 -   1458659 aaGGT
i manLeu1.NW_012105520v1    C 0 C 0
s cebCap1.NW_016107979v1       314516 5 -   1024465 AAGGT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       759729 5 -   3745603 AAGGT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 943917 5 - 119751181 AAGGT
i micMur3.chr3              I 163 C 0
s proCoq1.NW_012149419v1       666886 5 -   2566024 AAGGT
i proCoq1.NW_012149419v1    I 158 C 0
s otoGar3.GL873530            6783582 3 -  36342412 --GGT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55195144 5 + 124595110 AAGGT
i mm10.chr9                 I 35 C 0
s canFam3.chr30                 74248 5 -  40214260 AAGGC
i canFam3.chr30             I 73 C 0
s dasNov3.JH569975              70894 5 -   2180720 AAAGT
i dasNov3.JH569975          I 1 C 0
e calJac3.chr10              18032398 0 + 132174527 C
e colAng1.NW_012112253v1      7502548 0 -   9444221 C
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5362677 18 -   6271500 I
e rheMac8.chr7               60374256 0 + 169600520 C
e saiBol1.JH378276             530271 0 -   3282555 C

a score=705066.000000
s hg38.chr15_KI270850v1_alt    208780 52 +    430880 AAACCAGTAAAATAACATTGTGCTTGGTGCTGAATTTATGCTAGGATAGGCG
s panTro5.chr15              18018473 52 -  83230942 AAACCAGTAAAATAACATTGTGCTTGGTGCTGAACCTATGCTAGTATTGGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17244740 52 -  99763055 AAACCAGTAAAATAACATTGTGCTTGGTGCTGAACCTATGCTAGTATTGGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       307412 52 +    378907 AAACCAGTAAAATAACATTGTACTTAGTGCTGAATTTATGCTAGGATAGGCG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102162956 52 + 121039945 AAACCAGTAAAATGACATTATACTTGGTACTGAATCTATGCTAGGATAGGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374256 52 + 169600520 AAACCAGTAAAATGACATCGTACTTGGTGCTGAATCTATGCTTGGATAGGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107365937 52 - 171882078 AAACCAGTAAAATGACATTGTACTTGGTGCTGAATCTATGCTAGGATAGGCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1824197 52 -   1987038 AAACCAGTAAAATGACATCGTACTTGGTGCTGAATCTATGCTTGGATAGGCA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       320088 52 -   1458659 AAACCAGTAAAATGACATTGTACTTGGTGCTGAATCTATGCTAGGATAGGCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7502548 52 -   9444221 AAACCAGTAAAATGACATTTTACTTGGTGCTGAGTCTATGCTAGGATAGACA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18032398 52 + 132174527 AAACCAGTAAAATGACATTGTACTTGGTGCTGAATCTATGCTAGGATAGGAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             530271 52 -   3282555 AAACCAGTAAAATGACATTGTACTTGGTGCTGAATCTATGCTAGGATAGGAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       314521 52 -   1024465 AAACCAGTAAAATGACATTGTACTTGGTGCTGAATCTATGCTAGGATAGGAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       759734 52 -   3745603 AAACCAGTAAAATGGCATTGTACTTGGTGCTGAATCTATGCTAGGATAGGAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 943922 52 - 119751181 AAACCAATAAAATGACATTGTACTTGGTGCTGAATCTGTGCTAGGATAGGCA
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       666891 52 -   2566024 AAACCAATAAAATGACATTGTACTTAGTGCTGAATCTATGCTAGGGTAGACA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6783585 52 -  36342412 AAACCAGTCAAATAACATTGTACTTCATGCTTAGTCTGTGCGAGAATAGGCA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55195149 52 + 124595110 AAAGTAGTAAGTTGTTGTTGTACTTGGAGCTTGTTCCATGCTGGAACAGCCA
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 74253 52 -  40214260 AAACCAATAAAATGACATTGTACTTGGTGCTTAATCTATGCAAGGATAGGTG
i canFam3.chr30             C 0 I 2
s dasNov3.JH569975              70899 51 -   2180720 TAACCAATAAAATGACATTGTACTTGGTGTTTAATCTAACCTATGCTAGGA-
i dasNov3.JH569975          C 0 C 0
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5362677 18 -   6271500 I

a score=4778204.000000
s hg38.chr15_KI270850v1_alt    208832 355 +    430880 TTAACAGTGACCTTTATTTAAGGTTTTAATTTGTTCATGTTGGGCACTTAGAACATTGG-TTTGT------------TG---TT-------TTTTTGTG---------------------------------------------------------------AGATTCTGGAAACGTTCCAATTTTACCTTTTCCCCTTGACTCCAGAC-TTTTTAACACTGGTCTGCTACTGTTAAGTT------ATATGCCATTTGGTTAGGCCTTCTCAAGTGGGAACCAGGAACGCTGCTGTGTTCTAGA----GATG--TTTTGTTCTTCCTGTAGGGCTGAAGCAGTGCCTACTCGATAGAATCAGTCATCATGCAAATAAAAGCCACCTGAGTCAAAGGCAAAGCCAGAGTGCAGCTTGGAGCAAAGAAGGTAATTTTATTAAGAATTTTACATAAA
s panTro5.chr15              18018525 358 -  83230942 TTAACACTGACCTTTATTTAAGGTTCTAATTTGTTCATGTTGGGCACTTAGAACATCGG-TTTGT------------TGTTTTT-------TTTTTGTG---------------------------------------------------------------AGATTCTGGAAACATTCCAATTTTACCTTTTCCCCTTGACTCCAGAC-TTTTTAACACTGGTCTGCTACTGTTAAGTT------GTATGCCATTTTGTTAGGCCTTCTCAAGTGGGAATCAGGAACGCTGCTGTGCTCTAGA----GATG--TTTTGTTCTTCCTGTAGGGCTGAAGCAGTGCCTACTCGATAGAATCAGTCATCATGCAAATAAAAGCCACCTGAGTCAAAGGCAAAGCCAGAGTGCAGCTTGGAGCAAAGAAGGTACTTTTATTAAGAATTTTACATAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17244792 356 -  99763055 TTAACACTGACCTTTATTTAAGGTTCTAATTTGTTCATGTTGGGCACTTAGAACATCGG-TTTGT------------TG--TTT-------TTTTTGTG---------------------------------------------------------------AGATTCTGGAAACATTCCAATTTTACCTTTTCCCCTTGACTCCAGAC-TTTTTAACACTGGTCTGCTACTGTTAAGTT------GTATGCCATTTTGTTAGGCCTTCTCAAGTGGGAATCAGGAACGCTGCTGTGCTCTAGA----GATG--TTTTGTTCTTCCTGTAGGGCTGAAGCAGTGCCTACTCGATAGAATCAGTCATCATGCAAATAAAAGCCACCTGAGTCAAAGGCAAAGCCAGAGTGCAGCTTGGAGCAAAGAAGGTACTTTTATTAAGAATTTTACATAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       307464 355 +    378907 TTAACAGTGACCTTTATTTAAGGTTCTAATTTGCTCATGTTGGGCACTTAGAACATTGG-TTTGT------------TG---TT-------TTTTTGTG---------------------------------------------------------------AGATTCTGGAAACATTCCAATTTTACCTTTTCCCCTTGACTCCAGAC-TTTTTAACATTGGTCTGCTACTGTGAAGTT------ATATGCCATTTGGTTAGGCCTTCTCAAGTGGGAACCAGGAACGCTGCTGTGCTCTAGA----GATG--TTTTGTTCTTCCTGTAGGGCTGAAGCAGTGCCTACTCGATAGAATCAGTCATCATGCAAATAAAAGCCACCTGAGTCAAAGGCAAAGCCAGAGTGCAGCTTGGAGCAAAGAAGGTACTTTTATTAAGAATTGTACATAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163008 355 + 121039945 TTAACAGTGATCTTTATTTAAGGATCTAATTTGCTCACGTTGGGCACTTAGAAAATCGG-TTTGT------------TG---TT-------TTCTTGTG---------------------------------------------------------------AGATTCTGGAAACGTTCCAATTTTACCTTTTCCCCTTGACTCCAGAC-TTTTTAACACTGGTCTGCTGCTGTTAAGTT------ATATGCCATTTTGTTAGGCCTTCTCAAGTGGGAATCAGGAATGCTGCTGTGTTCTAGG----GATG--TTTTGTTCTTCCTGTAGGGCTGAAGAAGTGCCTACTCGAAAGAATCAGTCATCATGCAAATAAATGCCACCTGAGTCAAAGGCAAAGCCAGAGTGTAGCTTGGAGCAAAGGAGGTACTTTTATTAAGAATTTTACATAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374308 354 + 169600520 TTAAGAGTGACCTTTATTTAAGGTTCTAACTTGTTCATGTTGAGCACTTAGAACATTGG-TTTAT------------TG----T-------TTTTTGTG---------------------------------------------------------------AGATTCTGGAAATGTTCCAATTTTACTTTTTCCCCTTGACTCCAGAC-TTTGTAACACTGGTCTGCTGCTGTTAAGTT------ATATGCCATTTTATTAGGGCTTCTGAAGTGGGAATCAGGAATGCTGCTGTGTTCTAGA----GATG--TTTTGTTCTTCCTGTAGGGCTGAAGCAGTGCCTACTCCATAGAATCAGTCATCATGCAAATAAATGCCACCTGAGTCAAAGGCAAAGCCAACGTGCAGCTTGGAGCAAAGAAGGTACTTCTATTAAGAATTTTATATAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107365989 354 - 171882078 TTAAGAGTGACCTTTATTTAAGGTTCTAATTTGCTCATGTTGGGCACTTAGAACATTGG-TTTGT------------TG----T-------TTTTTGTG---------------------------------------------------------------AGATTCTGGAAATGTTCCAATTTTACTGTTTCCCTTTGACTCCAGAC-TTTGTAACACTGGTCTGCTGCTGTTAAGTT------ACATGCCATTTTGTTAGGGCTTCTCAAGTGGGAATCAGGAATGCTGCGGTGTTCTAGA----GATG--TTTTGTTCTTCCTGTAGGGCTGAAGCAGTGCCTACTCCATAGAATCAGTCATCATGCAAATAAATGCCACCTGAGTCAAAGACAAAGCCAAAGTGCAGCTTGGAGCAAAGAAGGTACTTCTATTAAGAATTTTACATAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5362695 354 -   6271500 TTAACAGTAACCTTTATGTAAGGTTCTAATTTGGTCATGTTGGGCACTTAGAACATTGG-TTTGT------------TG----T-------TTTTTGTG---------------------------------------------------------------AGATTCTGGAAATGTTCCAATTTTACTTTTTCTCCTTTACTCCAGAC-TTTTTAACACTGATCTGCTGCTGTTAAGTT------ATATGCTATTTTGTTAGGCCTTCTCAAGTGGGAATCAGGAATGCTGCGGTGTTCTAGA----GATG--TTTTGTTCTTCCTCTAGGGCTGAAGCAGTGCCTACTCGATAGAATCAGTCATCATGCAAATAAATGCCACCTGAGTCAAAGGCAAAGCCAACGTGCAGCTTGGAGCAAAGAAGGTACTTTTATTAAGAATTTGACAGAAA
i macNem1.NW_012011056v1    I 18 C 0
s cerAty1.NW_012002657v1      1824249 354 -   1987038 TTAAGAGTGACCTTTATTTAAGGTTCTAATTTGTTCATGTTGAGCACTTAGAACATTGG-TTTAT------------TG----T-------TTTTTGTG---------------------------------------------------------------AGATTCTGGAAATGTTCCAATTTTACTTTTTCCCCTTGACTCCAGAC-TTTTTAACACTGATCTGCTGCTGTTAAGTT------ATATGCCATTTTATTAGGGCTTCTCAAGTGGGAATCAGGAATGCTGCTGTGTTCTAGA----GATG--TTTTGTTCTTCCTGTAGGGCTGAAACAGTGCCTACTCGATAGAATCAGTCATCATGCAAATAAATGCCACCTGAGTCAAAGGCAAAGCCAGTGTGCAGCTTGGAGCAAAGAAGTTACTTTTATTAAGAATTTTATATAAA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       320140 354 -   1458659 TTAAGAGTGACCTTTATTTAAGGTTCTAATTTGCTCATGTTGGGCACTTAGAACATGGG-TTTGT------------TG----T-------TTTTTGTG---------------------------------------------------------------AGATTCTGGAAATGTTTCAATTTTACTTTTTCCCCTTGACTCCAGAC-TTTGTAACACTGGTCTGCTGCTGTTAAGTT------ATATGCCATTTTGTTAGGGCTTCTCAAGTGGGAATCAGGAATGCTGCTGTGTTCTAGA----GATG--TTTTGTTCTTCCTGTAGGGCTGAAGCAGTGCCTACTCCATAGAATCAGTCATCATGCAAATAAATGCCACCTGAGTCAAAGGCAAAGCCAAAGTGCAGCTTGGAGCAAAGAAGGTACTTCTATTAAGAATTTTACATAAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7502600 354 -   9444221 TTAAGAGTGACCTTTATTTAAGGTTCTAATTTGCTTATGTTGGGCACTTACAACATTAG-TTTGT------------TG----T-------TTTTTGTG---------------------------------------------------------------AGATTCTGGAAATGGTCCAATTTTACTTTTTCCCCTTGACTCCAGAC-CTTTTAACACTGATCTGCTGCTGTTGAGGC------ATATGCCTTTTTGTTAGGCCTTCTCAAGTGGGAATCAGGAATGCTGCTGTGTTCTAGA----GAAG--TTTTGTTCTTCCAGTAGGGCTGAAGCAGTGCCTACTCAATAGAATCGGTCATTGTGCAAAGAAATGCCACCTGACTGAAAGGCAAAGCCAGAGTGCAGCTTGGAGCAAAGAAGGTACTTTTATTAAGAATTTTACAGAGA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18032450 402 + 132174527 TTAAGAATGACCTTTATTTAAGGTTCTAATTTGCTCATGTTGGGCACTTGGAACATAGG-TTTGT------------TG----T-------TGTTGTTG----------------TTTTGTGTGTGTGTGTgagagagagagagagagaatgagagagagagagaTTCTGGAAATGGGCCAATTTTACTTTTCCCCCTTGACTAGAGACTTTTTAAATATTGATTTGCTGCTGTTGAGTT------ACATGCCATTTTGTTAGGCTTTCTCAAGTGGGAATCAGAAATGCTGCCATATTTTAGA----GATG--TTTTGTTCTTCCTATAGGGCTGGAGCAGTGCCTACTCCATAGAATCGGTCATCATGCAAATAAATGCCACTTTAGTCAAAGGCAAAGCCAGAGTGCAGTTTGGAGCAAATAAGGTACTTTTATTAAGAATTTTACATAAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             530323 404 -   3282555 TTAAGAGTGACCTTTATTTAAGGTTTTAATTTGCTCATGTTGGGCACTTGGAACATAGG-TTTGT------------TG----CATGTGTGTGTGGGTGTGTGATTCTGGGCCAATTTTAtgtgtgtgtgtgtgtg--------------tgtgAGAGAGAGAGATTC------TGGGCCAATTTTACTTTTCCCACTTGGCTATAGAC-TTTTAAACACTGATTTGCTGCTATTGAGTT------ACATGCCATTTTGTTAGGCTTTCTCAAGTGGGAATCAGAAATGCTGCCATATTTTAGA----GATG--TTTTTTTCTTCCTGTAGGGCTGGAGCAGTGCCTACTCGATAGAATCGGTCATCATGCAGATAAATGCCACCTTAGTCAAAGGCAAAGCCAGAGTGCAGTTTGGAGCAAATAAGGTACTTTTATTAAGAATTTTACATAAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       314573 372 -   1024465 TTAAGAGTGACCTTTATTTACGGTTTTAATTTGCTCATGTTGGGCACTTGGAACTTAGg-tttgt------------tg----t-------tgtgtgtg---------------------tgtgtgtgtgtgtgtg------------------------AGATATTCTGGAAATGGGCCAATTTTACTTTTCCCCCTTGACTATAGAC-TTTTAAACACCGATTTGCTGCTGTTGAGTT------ACATGCCATTTTGTTAGGCTTTCTCAAGTGGGAATCAGAAATGCTGCCATATTTTAGA----GATG--TTTTGTTCTTTCTGTAGGGCTGGAGCAGTGCCTACTCAATAGAATCGGTCATCATGCAAATAAATGCCACCTTAGTCAAAGGCAAAGCCAGAGTGCAGTTTGGAGCAAATAAGGTACTTTTATTAAGAATTTTACATAAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       759786 377 -   3745603 TTAAGAGTGACCTTTGTTTAAGGTTCTAATTTGCTCATGTTGGGCACTTGGAACATAGg-tttgt------------tg----t-------tttgtttt----------------ttttgtgtgtgtatgtgtgtg------------------------tgtgATTCTGGAAATTGGCCAATTTTACTTTTCCCCCTTGACTATAGAC-TTTTAAACACTGATTTGCTGCTGTTGAGTT------ACATGCCATTTTGTTAGGCTTTCTCAAGTGGGAATCAGAAATGCTGCCATATTTTAGA----GATG--TTTTGTTCTTCCTGTAGGGCTGGAGCAGTGCCTACTCGATAGAATCGGTCATCATGCAAATAAATGCCACCTTAGTCAAAGGCAAAGCCAGAGTGCAGTTTGGAGCAAATAAGGTACTTTTATTAAGAATTCTACATAAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 943974 346 - 119751181 TTAAGAGTGATATTATTTTAAGGTTATAATTTGCTCATGGTAGGCCCTTAGAATGTAGG-TTTTT------------AT----T-------TTTTTGTG---------------------------------------------------------------AGATTCTGGAAATGGTCCAGTTTTACTTTGTTCCTTTGACTACAAAC-TTCTTAAAACCAATTTGCTATTGATGAGTTGTT---ATATGCCATTTCATTAGGCTTTTCCAAGTGGGAATGAAGAATATTACTGTG-----------------TTTTCTTCTTCCTGTAGGGCTGGAGCAGTGCCTACTCAATAGAATCCGTCATCATGCAAATAAATGCCACCTTAGTCAAAGGCAAAGCCAGAGTACAGTTTGGAGCAAATAAGGTACTTTTATTAAGAACTTTACATAAA
i micMur3.chr3              C 0 I 106
s proCoq1.NW_012149419v1       666943 372 -   2566024 TTAAGAGTGATGTTTATTTAAGGTT-TAATTTGCTCATGTTAGGCCCTTAGAATGTAGt-tttttaaattttttttaaa----t-------tttttGTG---------------------------------------------------------------AGATTCTGGAAATGGTCCAATTTTACTTTGTTCCCTTGACTACAAAC-TTCTTAAAATCAATTTGCTATTGTTGAGTTGTT---ATATGCCATTTCTTTAGGCTTTCCCAAGTGGAAATGGGGAATACTACTGTGTTTTATCAAGATGTA--TTTTCTTCTTCCTGTAGGGCTGGAGCAGTGCCTACTCAATAGAGTCCGTCATCATGCAGATAAATGCCACCTTAGTCAAAGGCAAAGCCAGAGTACAGTTTGGAGCAAATAAGGTAATTTTATTAAGAACTTTACATAAA
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6783637 361 -  36342412 TTAAGAGTGATGTTTAGTCAAGGTCATACTTTCCTCATGTTAGGCAATTGAAATGTAGG-TTTGT---------CTTAT----T-------TTTGTGTG---------------------------------------------------------------TGATTCTGGAAATGGTCCAATTTTACTTTGTCCCGTTGACTACCAAC-TTATTAACTCTGATTTGCTGTTGTGGAGTTGTTA--ATATGCCATTTTGTTAGGCTTTCCCAAGTGGGAATGGGGAACAGTACTGTTTCTGCTT----TGTG--TTTTCTTCTTCCTGTAGGGCTGGAGCAGTGCCTACTCAATAGAGTCTGTCATCATGCAAATAAATGCCACCTTAGTCAAAGGCAAAGCCAGAGTACAGTTTGGAGCAAATAAGGTACTTTTATTAAGAATTTTACATAGC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55195201 344 + 124595110 TTGAGAGTGATGTTAATCTGAAATTATAATCTCCTCA-GT--GGCATTTAGAACAGGG-------------------GG----T-------GGTTTGTG---------------------------------------------------------------AGATTATAGAAGTGGCCCAGTGT-----TTTTCCTGTCACTACAGAT-TTGTTAGCACTGATTTGCTGTTGTTGGGGTCCTCCTCTGTGATGTTTTACTAGGTTTTTCTGAATGGGAATTGTGAAGACTGCTGAGTT-TAGA----TGCA--CCTTGTTCTTCCCACAGGGCTGGAGCAGTGCCTACTCAATAGAATCTGTCATCATGCAGATCAATGCCACCTTAGTGAAAGGCAAAGCCCGGGTGCAGTTTGGAGCAAATAAGGTACTT-GACGAAGAACTCCACAGACG
i mm10.chr9                 C 0 I 2
s canFam3.chr30                 74307 352 -  40214260 CTGAGAGCGATGTTTCTATAAGGTTATAATTTGCTCATGTTTGATACTTAGAACATAGAttttgt------------tt----t-------tgtttttg----------------ttttACA----------------------------------------AGATTTTTAGAA-AGTCCAACTTTACTTTTTTCTCTTGTATACAGAC-TTCTTAACATTGTCTTGCTGTTGTCAAGCTGCT---ACGTGCCATTT---TAAGTTTTCCCAAGTGGGAATCAAGAGTACCACTGTGTT---------------TTTTCTTCTTCCTGTAGGGCTGGAGCAGTGCCTACTCAATAGAATCAGTCATCATGCAGATCAATGCCACCTTAGTGAAAGGCAAAGCCAGAGTGCAGTTTGGAGCAAATAAGGTACCTTTATTAAGAAGATCACATAAA
i canFam3.chr30             I 2 C 0
s dasNov3.JH569975              70950 356 -   2180720 TTATGAGTAGTGCTTATTTAAGATTATAATTT----ACATTAGGCCCTCAAAAGTTTTG-TGTGT------------GT----G-------TTTGAGAG-----------------------------------------------------------AGAGAGATCCTGGAAGTGTGTCAACTTTACTTTTTCCTCTTAGCTATCAAT-TTC---ACATTAATTTGCTGCTGTTAAGTTATT---ATATGCCATTTTGCTAAGCTTTCATAAGTGGGAATCAAGAACACCACCATGTTCTAGA----GAAGTCTTCTCTTTTTCCTATAGGGCTGGAGCAGTGCCTACTCAATAGAATCGGTCATCATGCAGATCAATGCCACCTTAGTCAAAGGCAAAGCCAGAGTGCAGTTTGGTGCAAATAAGGTAATTTTATTAAGACTTTTACACCAA
i dasNov3.JH569975          C 0 C 0
e chlSab2.chr29              21074217 218 -  24206276 I

a score=40600.000000
s hg38.chr15_KI270850v1_alt    209187 5 +    430880 CCATA
s panTro5.chr15              18018883 5 -  83230942 CCATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245148 5 -  99763055 CCATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       307819 5 +    378907 CCATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163363 5 + 121039945 CCATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374662 5 + 169600520 TTATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366343 5 - 171882078 CCATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363049 5 -   6271500 CCCTA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1824603 5 -   1987038 TTATA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       320494 5 -   1458659 CCGTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7502954 5 -   9444221 CCGTA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18032852 5 + 132174527 CCATA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             530727 5 -   3282555 CCATA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       314945 5 -   1024465 CCATA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       760163 5 -   3745603 CCATA
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       667315 5 -   2566024 CTATA
i proCoq1.NW_012149419v1    C 0 I 101
s otoGar3.GL873530            6783998 5 -  36342412 GTATA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55195547 3 + 124595110 CTG--
i mm10.chr9                 I 2 I 12
s canFam3.chr30                 74659 5 -  40214260 TGATA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              71306 5 -   2180720 CTATG
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 944320 106 - 119751181 I
e chlSab2.chr29              21074217 218 -  24206276 I

a score=355574.000000
s hg38.chr15_KI270850v1_alt    209192 41 +    430880 AGAT-ATATTTTATGCTACTTTGTGAGCCTTCTTCCTAT-----CTT
s panTro5.chr15              18018888 41 -  83230942 AGAT-ATATTTTATGCTACTTTGTGAGCCTTCTTCCTAT-----CTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245153 41 -  99763055 AGAT-ATATTTTATGCTACTTTGTGAGCCTTCTTCCTAT-----CTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       307824 41 +    378907 AGAT-ATATTTTATGCTACTTTGTGAGCCTTCTTCCTAT-----GTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163368 41 + 121039945 GGAT-ATATTTTATGTTAGTTTGTGAGCCTTCTTCCTGT-----CTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374667 41 + 169600520 AGAT-ATATTTTATATTACTTTGTGAACCTTCTTCCTGC-----CTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366348 41 - 171882078 AGAT-ACATTTTATATTACTTTGTGAGCCTACTTCCTGT-----CTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363054 37 -   6271500 AGAC-TTATTTTGTA----TTTGTGAGCCTTCTTTCTGT-----CTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1824608 41 -   1987038 AGAT-ATATTTTATATTACTTTGTGAACCTTCTTCCTGC-----CTT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       320499 41 -   1458659 AGAT-ACATTTTATATTACTTTGTGAGCCTACTTCCTGC-----CTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7502959 46 -   9444221 AGAT-ATATTTTATATTACTTTGTGAGCCTTCCTCCTGTCTTGACTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18032857 42 + 132174527 ATATAATACTTAATATTACTTTATGAGGCCTCTTCCTGT-----CTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             530732 41 -   3282555 AGAT-ATATTTAATATTACTTTATGAGGCTTCTTCCTGT-----CTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       314950 41 -   1024465 AGAT-ATATTTAATATTACTTTATGAGGCTTCTACCTGT-----CTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       760168 41 -   3745603 AACT-ATATTTAATATTACTTTATGAGGCTTCTTCCTGT-----CTT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6784003 34 -  36342412 AGAT-ATA----------CCTTAAGAGGGTTCTTTTTGTGTG--TTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55195562 35 + 124595110 TAGC-ATGCCTCACATC------TGAGGCATCTTCCTGT-----CTT
i mm10.chr9                 I 12 C 0
s canFam3.chr30                 74664 41 -  40214260 ATAC-ATGTTTTCTGTTACCTTATGAGACATCTTCTTGT-----TCT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              71311 41 -   2180720 AGAT-ATATTTCATGTTACCTTATGAGACAGCTTCTTCT-----CTT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 944320 106 - 119751181 I
e proCoq1.NW_012149419v1       667320 101 -   2566024 I
e chlSab2.chr29              21074217 218 -  24206276 I

a score=138484.000000
s hg38.chr15_KI270850v1_alt    209233 24 +    430880 AATTCTTTT-TGAGAGAAttcattt
s panTro5.chr15              18018929 24 -  83230942 AATTCTTTT-TGAGAGAAttcattt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245194 24 -  99763055 AATTCTTTT-TGAGAGAAttcattt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       307865 24 +    378907 AATTCTTTT-TGAGAGAAttcattt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163409 24 + 121039945 AATTCTTTT-TGAGAGAATTCATGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374708 24 + 169600520 AATTCTTTT-TGAGGTAATTCACTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366389 24 - 171882078 AATTCTTTC-TGAGAGAATTCATTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363091 18 -   6271500 AATTATTTT-T------ATTCATTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1824649 24 -   1987038 AATTCTTTT-TGAGGTAATTCATTT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       320540 24 -   1458659 AATTCTTTC-TGAGAGAAttcattt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7503005 24 -   9444221 AGTTCTTTT-TGAGAGAATTCATTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18032899 21 + 132174527 AATTCTTTTATTAGATAGTT----T
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             530773 21 -   3282555 AATTCTTTTATAAGATAGTT----T
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       314991 21 -   1024465 AATTCTTTTATGAGATAGTT----T
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       760209 21 -   3745603 AATTCTTTTATGACATAGTT----T
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6784037 15 -  36342412 ACTTCGTTA-TGAAG---------T
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55195597 23 + 124595110 GATTCTATT-TTTAA-AAtttattt
i mm10.chr9                 C 0 I 3487
s dasNov3.JH569975              71352 24 -   2180720 AATTATTTT-TGAGAGAATTTATTT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 944320 106 - 119751181 I
e proCoq1.NW_012149419v1       667320 101 -   2566024 I
e canFam3.chr30                 74705  0 -  40214260 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=510623.000000
s hg38.chr15_KI270850v1_alt    209257 56 +    430880 cattttcatttggtttgttttct---------------tttTGTTACAAAG-ATGATCTATAGAACATATAG--
s panTro5.chr15              18018953 56 -  83230942 cattttcatttggtttgttttct---------------tttTGTTACAAAG-ATGATCTATAGAACATATAG--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245218 56 -  99763055 cattttcatttggtttgttttct---------------tttTGTTACAAAG-ATGATCTATAGAACATATAG--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       307889 56 +    378907 cattttcatttggtttgttttct---------------tttTGTTACAAAG-ATGATCTATAGAACATATAG--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163433 56 + 121039945 CATTTTCATTTGGTTTGTTTTCT---------------TTTTGTTACAAAG-ATGATCTATAGAAAATATAG--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374732 56 + 169600520 CATTTTCATTTGGCTTGTTTTCT---------------TTTTGTTACAAAG-ATGATCTATAGAAAATATAG--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366413 56 - 171882078 CATTTTCATTTGGTTTGTTTTCT---------------CTTTGTTACAAAG-ATGATCTATAGAAAATATAG--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363109 56 -   6271500 CATTTTCATTCGGTTTGTTTTCT---------------TTCTGTTACAAAC-GTGATCTATAGAAAATATAG--
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1824673 56 -   1987038 CATTTTCATTTGGCTTGTTTTCT---------------TTTTGTTACAAAG-ATGATCTATAGAAAATATAG--
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       320564 56 -   1458659 cattttcatttggtttgttttct---------------tttTGTTACAAAG-ATGATCTATAGAAAATATAG--
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7503029 56 -   9444221 CATTTTCATTTGGTTTGTTTTCT---------------TCTTGTTGAAAAG-ATGATCTatagaaaatataa--
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18032920 54 + 132174527 CATTTTCATTTGGTTTGTTTTCT------------------TGTTACAAAATGTGATCTATAGAAAATATAG--
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             530794 54 -   3282555 CATTTTCATTTGGTTTGTTTTCT------------------TGTTACAAAATGTGATCTATAGAAAATATAG--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315012 54 -   1024465 CATTTTCATTTGGTTTGTTTTCT------------------TGTTACAAAATGTGATCTATAGCAAATATAG--
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       760230 54 -   3745603 CATTTTCATTTGGTTTGTTTTCT------------------TGTTACAAAATGTGATCTATAGAAAATACAG--
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6784052 45 -  36342412 CATTTTCATTTGGTTTGTTCT--------------------TGTTACAGAA-GTGATCTGTAGTAG--------
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              71376 73 -   2180720 AATTTTCATTTGGTTTATATTCTTAAAGGAATAAAACCTCCTGTTACAAAA-GTGATCAatagaatatacagag
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 944320 106 - 119751181 I
e proCoq1.NW_012149419v1       667320 101 -   2566024 I
e mm10.chr9                  55195620 3487 + 124595110 I
e canFam3.chr30                 74705  0 -  40214260 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=40565.000000
s hg38.chr15_KI270850v1_alt    209313 4 +    430880 AAGT
s panTro5.chr15              18019009 4 -  83230942 AAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245274 4 -  99763055 AAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       307945 4 +    378907 AAGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163489 4 + 121039945 AAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374788 4 + 169600520 AAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366469 4 - 171882078 AAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363165 4 -   6271500 AAGT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1824729 4 -   1987038 AAGT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       320620 4 -   1458659 AAGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7503085 4 -   9444221 aagt
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18032974 4 + 132174527 AAGT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             530848 4 -   3282555 AAGT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315066 4 -   1024465 AAGT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       760284 4 -   3745603 AAGT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 944426 4 - 119751181 AAGT
i micMur3.chr3              I 106 C 0
s otoGar3.GL873530            6784097 2 -  36342412 AC--
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              71449 4 -   2180720 aagc
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       667320 101 -   2566024 I
e mm10.chr9                  55195620 3487 + 124595110 I
e canFam3.chr30                 74705 0 -  40214260 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=557401.000000
s hg38.chr15_KI270850v1_alt    209317 51 +    430880 ATAAGAAAATTAAAG----TTACTAACTGATAATCACTTAATGA-TTTAGTATCTG
s panTro5.chr15              18019013 51 -  83230942 ATAAGAAAATTAAAG----TTACTAACTGATAATCACTTAATGA-TTTAGTATCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245278 51 -  99763055 ATAAGAAAATTAAAG----TTACTAACTGATAATCACTTAATGA-TTTAGTATCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       307949 51 +    378907 ATAAGAAAATTAAAG----TTACTAACTGATAATCACTTAATGA-TTTAGTATCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163493 49 + 121039945 ATAAGAAAATT--AG----TTACTAACTGATAATCACTTAATGA-TTTAGTATCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374792 51 + 169600520 ATAAGAAAATTAAAG----ATACTAACTGATAATTGCTTAATGA-TATAGTATCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366473 51 - 171882078 ATAAGAAAATTAAAG----ACACTGACTAATAATCACTTAATGA-TTTAGTATCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363169 51 -   6271500 ATAAGAAAATTAAGC----ATACTGACTGATAATCACTTAATGA-TTTAGTATCTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1824733 51 -   1987038 ATAAGAAAATTAAAG----ATACTAACTGATAATCGCTTAATGA-TATAGTATCTG
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       320624 51 -   1458659 ATAAGAAAATTAAAG----ATACTGACTAATAATCACTTAATGA-TTTAGTATCTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7503089 51 -   9444221 ataagaacattaaag----atactaacagataaTTGCCTCATGA-TTTAGTATCTG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18032978 47 + 132174527 ATAAGAAAATTAAAA----GTACT----GATAATTGCTTAATGA-TTTAGTATCTC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             530852 47 -   3282555 ATAAGAAAATTAAAG----GTACT----GATATTTGCTTAATGA-TTTAGTATCTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315070 45 -   1024465 ATAAGAAAATTAAAG----GTACT----GATAATTGCTTAATGA-TTTAGTATC--
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       760288 47 -   3745603 ATAAGAAAATTAAAG----GTACT----GATAATTGCTTAATGA-TTTAGTATCTG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 944430 51 - 119751181 ATAAGAAAATTGAAG----ATACTCATTGATAATCACTTAATTA-TTTAGTATCTG
i micMur3.chr3              C 0 I 1609
s proCoq1.NW_012149419v1       667421 51 -   2566024 ATAAGAAAATTGAAG----ATACTCATTGATAATCACTTAATTA-TTTAGTATCTG
i proCoq1.NW_012149419v1    I 101 C 0
s otoGar3.GL873530            6784099 47 -  36342412 ATAAGAAAATTGAAG----ATACTCACTGATAATC----AATTA-TATAGTATCTG
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              71453 56 -   2180720 taaagaaaattgaagttccattcctattgataatcacttaattattttggtatctc
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55195620 3487 + 124595110 I
e canFam3.chr30                 74705  0 -  40214260 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=9830.000000
s hg38.chr15_KI270850v1_alt    209368 4 +    430880 ATTG
s panTro5.chr15              18019064 4 -  83230942 ATTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245329 4 -  99763055 ATTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308000 4 +    378907 ATTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163542 4 + 121039945 ATTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374843 4 + 169600520 ATTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366524 4 - 171882078 TTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363220 4 -   6271500 ATTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1824784 4 -   1987038 ATTG
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       320675 4 -   1458659 TTTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7503140 4 -   9444221 CTTA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033025 4 + 132174527 TTCT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             530899 4 -   3282555 TTCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315115 4 -   1024465 TTCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       760335 4 -   3745603 TTCT
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       667472 4 -   2566024 TTTG
i proCoq1.NW_012149419v1    C 0 C 0
s dasNov3.JH569975              71509 4 -   2180720 ttct
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 944481 1609 - 119751181 I
e mm10.chr9                  55195620 3487 + 124595110 I
e canFam3.chr30                 74705 0 -  40214260 C
e otoGar3.GL873530            6784146 0 -  36342412 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=1841.000000
s hg38.chr15_KI270850v1_alt    209372 1 +    430880 -T
s panTro5.chr15              18019068 1 -  83230942 -T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245333 1 -  99763055 -T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308004 1 +    378907 -T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163546 1 + 121039945 -T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374847 1 + 169600520 -T
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1824788 1 -   1987038 -T
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503144 1 -   9444221 -T
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033029 1 + 132174527 -T
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             530903 1 -   3282555 -T
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315119 1 -   1024465 -T
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       760339 1 -   3745603 -T
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       667476 1 -   2566024 -T
i proCoq1.NW_012149419v1    C 0 I 1100
s canFam3.chr30                 74705 1 -  40214260 -T
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              71513 1 -   2180720 a-
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 944481 1609 - 119751181 I
e mm10.chr9                  55195620 3487 + 124595110 I
e otoGar3.GL873530            6784146 0 -  36342412 C
e manLeu1.NW_012105520v1       320679 0 -   1458659 C
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5363224 0 -   6271500 C
e macFas5.chr7              107366528 0 - 171882078 C

a score=250770.000000
s hg38.chr15_KI270850v1_alt    209373 26 +    430880 TTAGTCTTTGTTATATTTACTGTAGA
s panTro5.chr15              18019069 26 -  83230942 TTAGTCTTTGTTATATTTACTGTAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245334 26 -  99763055 TTAGTCTTTGTTATATTTACTGTAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308005 26 +    378907 TTAGTCTTTGTTATATTTACTGTAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163547 26 + 121039945 TTAGTCTTTCTTATATTTACTGTAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374848 26 + 169600520 TTCGTCTTTATTATATTTACTGCAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366528 23 - 171882078 ---GTCTTTGTTATATTTACTGTAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363224 23 -   6271500 ---GTCTTTGTAATATTTAGTGTAGA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1824789 26 -   1987038 TTCGTCTTTATTATATTTACTGTAGA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       320679 23 -   1458659 ---GTCTTTGTTATATTTACTGTAGA
i manLeu1.NW_012105520v1    C 0 M 978
s colAng1.NW_012112253v1      7503145 26 -   9444221 TTAGTCTTTGTTATATTTACTGTAGG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033030 20 + 132174527 ------TTTGTTATATTTGCTGTAGA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             530904 26 -   3282555 TTAGTCTTTGTTATATTTGCTGTAGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315120 26 -   1024465 TTAGTCTTTGTTATATTTGCTATAGA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       760340 26 -   3745603 TTAGTCTTTGTTATATTTGCTGTAGA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6784146 16 -  36342412 -------TTGCTGTATTTAGTAT---
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 74706 26 -  40214260 CTAGTCTTTGTTATTCTTACTATAGG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              71514 26 -   2180720 ttagtcttttttctatttattataga
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 944481 1609 - 119751181 I
e proCoq1.NW_012149419v1       667477 1100 -   2566024 I
e mm10.chr9                  55195620 3487 + 124595110 I
e chlSab2.chr29              21074217 218 -  24206276 I

a score=375481.000000
s hg38.chr15_KI270850v1_alt    209399 48 +    430880 GAAACATGTCTACAGTTGTAAATTTATTATTGTTATGTATACCATAG-----T
s panTro5.chr15              18019095 48 -  83230942 GAAACATGTCTACAGTTGTAAATTTATTATTGTTATGTATACCATAG-----T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245360 48 -  99763055 GAAACATGTCTACAGTTGTAAATTTATTATTGTTATGTATACCATAG-----T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308031 48 +    378907 GAAACATGTCTACAGTTGTAAATTTATTAATGTTATGTATACCATAG-----T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163573 48 + 121039945 GAAACATGTCTACAGTTGTAAATTTCTTATTGTTATGTGTACCGTAG-----T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374874 48 + 169600520 CAAACATGTCTACAGTAGTTAATTTATTATTGGTATGTATATTCTAG-----T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366551 48 - 171882078 CAAATATGTCTACAGTTGTAAATTTATTATTGGTATGTATACCCTAG-----T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363247 48 -   6271500 CAAACATGTCTACAGTTGTAAATTTATTATCCGTATGTATACCATAG-----T
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1824815 48 -   1987038 CAAACGTGTCTACAGTAGTTAATTTATTATTGGTATGTATATTCTAG-----T
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503171 53 -   9444221 CAAATATGTCTACAGTTGTAAATTAATTATTGGTCTGTATACCCTAGTAAGTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033050 53 + 132174527 TAAACATGTCTACAGTTGTAAATTTGTCATTGGTATGTATACCCAAATATGTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             530930 53 -   3282555 TAAACATGCCTACAGTTGTAAATTTGTTATTGGTCTGTATACCCTAATATGTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315146 53 -   1024465 TAAACATGTCTACAGTTGTAAATTTGTTATCAGTATGTATACCCTAATATGTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       760366 53 -   3745603 TAAACATGTCTACAGTTGTAAATTTGTTATTGGTATGTATACCCTAATATGTT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6784162 44 -  36342412 -AAACATATCTACAGTTTTAAAT---TTATTGGTTTGTATAGCATAG-----T
i otoGar3.GL873530          C 0 I 5
s canFam3.chr30                 74732 47 -  40214260 TAAACATGTCTATAATTTGAAGT------CTTGTATGTATATGCTAATGAGTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              71540 46 -   2180720 tatacatgtctataATTTTAAATTTATTATT--TATGTATATCCTAA-----T
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 944481 1609 - 119751181 I
e proCoq1.NW_012149419v1       667477 1100 -   2566024 I
e mm10.chr9                  55195620 3487 + 124595110 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=473153.000000
s hg38.chr15_KI270850v1_alt    209447 43 +    430880 ----AAAAGTTATATGTACTTTGAAGTTTTGCAAAATTGAGTTCATG
s panTro5.chr15              18019143 43 -  83230942 ----AAAAGTTATATGTACTTTGAAGTTTTGCAAAATTGAGTTCATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245408 43 -  99763055 ----AAAAGTTATATGTACTTTGAAGTTTTGCAAAATTGAGTTCATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308079 43 +    378907 ----AAAAGTTATATGTACTTTGAAGTATTGCAAAATTGAGTTCATG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163621 43 + 121039945 ----AAAAGTTATATGTACTTTGAAGTTTCACAAAATTGAGTTCATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374922 43 + 169600520 ----AAAAGTTATATGTACTTTGAAGTTTTACAAAATTGAGTTCATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366599 38 - 171882078 ----AAAAGTTATATGTACTTTGAAGTTTTGCAAA-----GTTCATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363295 43 -   6271500 ----AAAAGTTGTATGTACTTTGAAGTTTTGCAAAATTGTGTTCATG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1824863 43 -   1987038 ----AAAAGTTATATGTACTTTGAAGTTTTACAAAATTGAGTTCATG
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503224 43 -   9444221 ----AAAAGTTATATGTACTTTGAAGTTTTGCCAAATTGAGTTCATG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033103 43 + 132174527 ----AAAAATTATATGTACTTTGAAGTTTTAAAAAATTGAGTTCATG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             530983 43 -   3282555 ----AAAAATTAGATGTACTTTGGAGTTTTAAAAAATTGAGTTCATG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315199 43 -   1024465 ----AAAAATTATATGTACTTTGGAGTTTAAAAAAATTGAGTTCATG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       760419 43 -   3745603 ----AAAAATTATATGTACTTTGAAGTTTTAAAAAATTGAGTTCATG
i aotNan1.NW_018511953v1    C 0 I 449
s proCoq1.NW_012149419v1       668577 43 -   2566024 ----AAAAATTATACATACTTTGAAGTTTTGCAAAATTGAGATCATG
i proCoq1.NW_012149419v1    I 1100 C 0
s otoGar3.GL873530            6784211 43 -  36342412 ----AAAAATTATACATACTTTGAAGTCTTGCAAAATTAAGATCACA
i otoGar3.GL873530          I 5 C 0
s canFam3.chr30                 74779 43 -  40214260 ----AAAAATTATATGTACTTTAAAGATTGCCGAAATTGAGATCATG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              71586 47 -   2180720 AAATAGGAATTTTAGGTACTTTGAAGTTTCCCAAAATTGAAATCATT
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 944481 1609 - 119751181 I
e mm10.chr9                  55195620 3487 + 124595110 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=263442.000000
s hg38.chr15_KI270850v1_alt    209490 35 +    430880 -TTATAA-AAT--------TAATTCCTGATGAACTTTTATGTGCT
s panTro5.chr15              18019186 35 -  83230942 -TTATAA-AAT--------TAATTCCTGATGAACTTTTATGTGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245451 35 -  99763055 -TTATAA-AAT--------TAATTCCTGATGAACTTTTATGTGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308122 35 +    378907 -TTATAA-AAT--------TAATTCCTGATGAACTTTTATGTGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163664 35 + 121039945 -TTATAG-AAT--------TAATTCCTGATGAACTTGTATGTGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60374965 35 + 169600520 -TTATAG-AAT--------TAATTCATGATGAACTTTTATGTGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366637 35 - 171882078 -TTATAG-AAT--------TAATTCCTGATGAACTTTTATGTGCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363338 35 -   6271500 -TTATAG-AAT--------TAATTCCTGATGAATTTTTATGTGCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1824906 35 -   1987038 -TTATAG-AAT--------TAATTCATGATGAACTTTTATGTGCT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503267 35 -   9444221 -CTGTAG-ACT--------TAATTCCTGATGAACTTTTATGTGCT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033146 34 + 132174527 -TTATAG-AA---------TAATTCCTGGTAAGCTTTTATTTGCT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             531026 38 -   3282555 -TTATAG-AATAA-----CTAATTACTGGTAAGTTTTTATGTGCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315242 38 -   1024465 -TTGTAG-AATAA-----CTAATTCCTGATAAGCTTTTATGTGCT
i cebCap1.NW_016107979v1    C 0 C 0
s proCoq1.NW_012149419v1       668620 35 -   2566024 -TTataa-tat-------ttaattcctagtgagc-tttatgtgct
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6784254 43 -  36342412 -TTGTAA-TCCTATTGTGTTAATTCCTATTgtgcttttatgtgct
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 74822 36 -  40214260 -TTataatagt--------taattcccagtgagcatttatatgct
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              71633 36 -   2180720 TTAACat-agt--------taacatctaatgatcatatatgtgct
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 944481 1609 - 119751181 I
e aotNan1.NW_018511953v1       760462 449 -   3745603 I
e mm10.chr9                  55195620 3487 + 124595110 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=132733.000000
s hg38.chr15_KI270850v1_alt    209525 12 +    430880 AGGCACTAGTCT
s panTro5.chr15              18019221 12 -  83230942 AGGCACTAGTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245486 12 -  99763055 AGGCACTAGTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308157 12 +    378907 AGGCACTAGTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163699 12 + 121039945 AGGCACTAGTCt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375000 12 + 169600520 AGGCACTAGTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366672 12 - 171882078 AGACACTAGTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363373 12 -   6271500 AGACACTAGCCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1824941 12 -   1987038 AGGCACTAGTCT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503302 12 -   9444221 AGGCACTAGTGT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033180 12 + 132174527 AGGCTCTAGTCt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             531064 12 -   3282555 AGGCTCTAGtct
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315280 12 -   1024465 AGGCTCTAGTCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       760911 12 -   3745603 AGGCTCTAGTCT
i aotNan1.NW_018511953v1    I 449 C 0
s proCoq1.NW_012149419v1       668655 12 -   2566024 aggctctagtct
i proCoq1.NW_012149419v1    C 0 I 180
s otoGar3.GL873530            6784297 11 -  36342412 aggctctagtc-
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 74858 12 -  40214260 aggctctgatct
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              71669 12 -   2180720 aggctttagtct
i dasNov3.JH569975          C 0 I 3
e micMur3.chr3                 944481 1609 - 119751181 I
e mm10.chr9                  55195620 3487 + 124595110 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=33096.000000
s hg38.chr15_KI270850v1_alt    209537 4 +    430880 TTTT
s panTro5.chr15              18019233 4 -  83230942 TTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245498 4 -  99763055 TTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308169 4 +    378907 TTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163711 4 + 121039945 tttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375012 4 + 169600520 TTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366684 4 - 171882078 TTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363385 4 -   6271500 TTTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1824953 4 -   1987038 TTTT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503314 4 -   9444221 TTTT
i colAng1.NW_012112253v1    C 0 I 29
s calJac3.chr10              18033192 4 + 132174527 tttt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             531076 4 -   3282555 tttt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315292 4 -   1024465 TTTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       760923 4 -   3745603 Tttt
i aotNan1.NW_018511953v1    C 0 C 0
s dasNov3.JH569975              71684 4 -   2180720 ctct
i dasNov3.JH569975          I 3 C 0
e micMur3.chr3                 944481 1609 - 119751181 I
e proCoq1.NW_012149419v1       668667 180 -   2566024 I
e mm10.chr9                  55195620 3487 + 124595110 I
e canFam3.chr30                 74870 0 -  40214260 C
e otoGar3.GL873530            6784308 0 -  36342412 C
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=54818.000000
s hg38.chr15_KI270850v1_alt    209541 12 +    430880 ATTTACTTATTT
s panTro5.chr15              18019237 12 -  83230942 ATTTACTTATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245502 12 -  99763055 ATTTACTTATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308173 12 +    378907 ATTTACTTATTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163715 12 + 121039945 atttatttattt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375016 12 + 169600520 ATTTATTTATTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366688 12 - 171882078 ATTTATTTATTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363389 12 -   6271500 AATTACTTATTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1824957 12 -   1987038 ATTTATTTATTT
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chr10              18033196 12 + 132174527 atttatatgttt
i calJac3.chr10             C 0 I 1
s saiBol1.JH378276             531080  8 -   3282555 gtt----tgttt
i saiBol1.JH378276          C 0 I 1
s cebCap1.NW_016107979v1       315296 12 -   1024465 ATTTATTTGTTT
i cebCap1.NW_016107979v1    C 0 I 1
s aotNan1.NW_018511953v1       760927 12 -   3745603 atttatttgttt
i aotNan1.NW_018511953v1    C 0 I 1
s dasNov3.JH569975              71688  6 -   2180720 ----acttgc--
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 944481 1609 - 119751181 I
e proCoq1.NW_012149419v1       668667 180 -   2566024 I
e mm10.chr9                  55195620 3487 + 124595110 I
e canFam3.chr30                 74870  0 -  40214260 C
e otoGar3.GL873530            6784308  0 -  36342412 C
e colAng1.NW_012112253v1      7503318 29 -   9444221 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=178544.000000
s hg38.chr15_KI270850v1_alt    209553 44 +    430880 TTACTTTTTTTGTTTCCCTCTGTGCCTATGCTTACCAAGTCTTT
s panTro5.chr15              18019249 44 -  83230942 TTACTTTTTTTGTTTCCCTCTGTGCCTATGCTTACCAAGTCTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245514 43 -  99763055 TTAC-TTTTTTGTTTCCCTCTGTGCCTATGCTTACCAAGTCTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308185 44 +    378907 TTACTTTTTTTGTTTCCCTCTGTGCCTATGCTTACCAAGTCTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163727 44 + 121039945 ttactttttttcttttCCTCTGTGCCTATACTTATCAAGTCTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375028 32 + 169600520 TTACTTCTTTT--CCCCctctgtg----------ccaagtcttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366700 41 - 171882078 TTACTTTTTTT---CCCCTCTGTGCCTATGCTTACCAAGTCTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363401 42 -   6271500 TTACTTTTTTT--CCCCCTCTGTGCCTATGCTTACCAAGTCTTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1824969 42 -   1987038 TTACTTCTTTT--CCCCCTCTGTGCCTATGCTtaccaagtcttt
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503347 40 -   9444221 ttTTTTCTTTT--TTCCCTC--TGCCTATGCTTACCAAGTCTTT
i colAng1.NW_012112253v1    I 29 C 0
s calJac3.chr10              18033209 42 + 132174527 ttattactttttttt--ctttgtgcctatgcttaccaagatttt
i calJac3.chr10             I 1 I 3
s saiBol1.JH378276             531089 44 -   3282555 ttattgcttttttttccctctattcctatgcttaccaagatttt
i saiBol1.JH378276          I 1 I 290
s cebCap1.NW_016107979v1       315309 43 -   1024465 TTACTACTTTTTTTT-CCTCTGTGCctatgcttaccaagatttt
i cebCap1.NW_016107979v1    I 1 I 1
s aotNan1.NW_018511953v1       760940 43 -   3745603 ttattactttctttT-CCTCTGTGCCTATGCTTACCAAGATTTT
i aotNan1.NW_018511953v1    I 1 I 1
s otoGar3.GL873530            6784308  1 -  36342412 -------------------------------------------t
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 74870  2 -  40214260 ------------------------------------aa------
i canFam3.chr30             C 0 C 0
e micMur3.chr3                 944481 1609 - 119751181 I
e proCoq1.NW_012149419v1       668667 180 -   2566024 I
e mm10.chr9                  55195620 3487 + 124595110 I
e dasNov3.JH569975              71694  0 -   2180720 C
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=1260908.000000
s hg38.chr15_KI270850v1_alt    209597 150 +    430880 TTA-TTTTTtactttttattagctctt------------------------tcagtcctcttaataactttaaaaga-gggtattattaatatctgcattttatggatgagacaactgaagg----------taggtaacttgt----ccaaagt-cacaggtggcagagcaaggattggaaccagacagt
s panTro5.chr15              18019293 150 -  83230942 TTA-TTTTTtactttttattagctctt------------------------tcaatcctcttaataactttaaaaga-gggtattattaatatctgcattttatggatgaggcaactgaagg----------taggtaacttgt----ccagagt-cacaggtggcagagcaaggattggaaccagacagt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245557 150 -  99763055 TTA-TTTTTtactttttattagctctt------------------------tcaatcctcttaataactttaaaaga-gggtattattaatatctgcattttatggatgaggcaactgaagg----------taggtaacttgt----ccagagt-cacaggtggcagagcaaggattggaaccagacagt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308229 129 +    378907 TTA-TTTTTTACTTTTtattagctctt------------------------tcaatcctcttaataac----------------------tatctgcattttatggatgaggcaactgaagg----------taggtaactcgt----ccaaagt-cacaggtggcagagcaaggattggaaccagacagt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163771 151 + 121039945 TTATTTTTTTACTTTTtattacctctt------------------------tcaatcctcttaataactttaagaga-gggtattattaatatctgcattttatggatgaggcaactgaagg----------taggtaacttgt----ccaagat-cacaggtggcagagcagggattggaaccagacagt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375060 150 + 169600520 tta-ttttttactttttattaactatt------------------------tcaatcctcttaataacttaaaaata-gggtattattagtatcagcattttgtggatgaggcaactgaagg----------taggtaacttgt----ccaaggt-cacaggtggcagatcaaggattggagccagacagc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366741 150 - 171882078 TTA-TTTtttacttctcactagctctt------------------------tcaatcctcttaataacttaaaaaga-gggtattattaatatctgcattttatggatgaggcaactgaagg----------caggtaacttgt----ccaaggt-cacaggtggcagagcaaggattggaatgagacagc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363443 174 -   6271500 TTA-TTTCTTACATTTCATtagctcttgttttttactttttattagctctaccaatcctcttaataacttaaaaaga-gagtattattaatatctgcatcatatggatgaggcaactaaagg----------taggtaacttgt----ccaaggt-cacaggtaacagagtgaggattggaaccagacagc
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1825011 150 -   1987038 tta-ttttttactttttattaactatt------------------------tcaatcctcttaataacttaaaaata-gggtattattagtatcagcattttatggatgaggcaactgaagg----------taggtaacttgt----ccaaggt-cacaggtggcagatcaaggattggagccagacagc
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503387 149 -   9444221 TTA-TTTTTCACGTCTtattaactctt------------------------tcagttctcttagtgacttaaaaaga-gggtattactaatatctgcattctgtagatgaggtaactggggg----------taggtaatttgt----ccaaggt-ca-aggtggcagagcaaggattaaaaccagacagt
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033254 160 + 132174527 tta-tcttttattttttattaactctt------------------------tcaatcctcttaataacttaaaaagt-aggtactattgttatatgcattttgtagatgaggcaactgaaggatacagaagttagataacttgt----ctaaggt-cacaagtggcagagcaaggattggaaccatgcagt
i calJac3.chr10             I 3 C 0
s saiBol1.JH378276             531423 160 -   3282555 tca-tcttttattttttattaactctt------------------------tcaatcctcttaataacttaaaaagt-aggtactattgttatatgcattttgtagaagaggcaactgaagcatacacaagttagataacttgt----ctaaggt-cacaagtggcagagcaaggattggaaccaggcagt
i saiBol1.JH378276          I 290 C 0
s cebCap1.NW_016107979v1       315353 160 -   1024465 tta-tattttattttttattaactctc------------------------tcaatcctcttaataacttaaaaagt-aggtactattgttatatgcattttgtagatgaggcaactgaagcatacagatgttagataacttgt----ctaaggt-cacaagtggcagagcaaggattggaaccaggcagt
i cebCap1.NW_016107979v1    I 1 C 0
s aotNan1.NW_018511953v1       760984 160 -   3745603 TTA-TCTTTGATTTTTtattaactctt------------------------tcgatcctcttaataacttaaaaagt-aggtactattgttatatgcattttgtagatgaggcaactgaagcatacagaagttagataacttgt----ctaaggt-cacaagtggcagaacaaggattggaaccaggcagt
i aotNan1.NW_018511953v1    I 1 C 0
s otoGar3.GL873530            6784309 160 -  36342412 gaa-ttttttacttat-gttaactctt------------------------tcaaccctcttaataacctaaaaaggtaggtgctgttattgtccttgttttgtagatgaggaaactgaagcacacagaggttagataacttgt----ctaaggt-catgagtagctgagcaaggcttggaaccagacagt
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 74872 161 -  40214260 --a-ctttttacttgtaggta-ctatt------------------------tcagtccttttactgac-agaagagt-aggtaatattatcgtcctcattttgtggatgaggaaactgaagcacatggaggttagataacgcatgtaggtaaggtggacaggtggcagaatgaggattggaaccagacggc
i canFam3.chr30             C 0 I 1664
s dasNov3.JH569975              71694 144 -   2180720 -----------------attgactctt------------------------taaatcctcttaataacctaaacagt-agttactattattgtcctcattttgtagatgaggaaactgaagtacagagaagttaggtgacttga----ttaagct-cacaggtggcagagtgaggattggaaccagacagt
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 944481 1609 - 119751181 I
e proCoq1.NW_012149419v1       668667 180 -   2566024 I
e mm10.chr9                  55195620 3487 + 124595110 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=36152.000000
s hg38.chr15_KI270850v1_alt    209747 3 +    430880 ctg
s panTro5.chr15              18019443 3 -  83230942 ctg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245707 3 -  99763055 ctg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308358 3 +    378907 ctg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163922 3 + 121039945 ctg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375210 3 + 169600520 ctg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366891 3 - 171882078 ctg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363617 3 -   6271500 ctg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1825161 3 -   1987038 ctg
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503536 3 -   9444221 ctg
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033414 3 + 132174527 ctg
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             531583 3 -   3282555 ctg
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315513 3 -   1024465 ctg
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       761144 3 -   3745603 ctg
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6784469 3 -  36342412 ctg
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 76697 3 -  40214260 CTT
i canFam3.chr30             I 1664 C 0
s dasNov3.JH569975              71838 3 -   2180720 ctg
i dasNov3.JH569975          C 0 I 2890
e micMur3.chr3                 944481 1609 - 119751181 I
e proCoq1.NW_012149419v1       668667 180 -   2566024 I
e mm10.chr9                  55195620 3487 + 124595110 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=178633.000000
s hg38.chr15_KI270850v1_alt    209750 21 +    430880 actgccctaggccc--aaccaag
s panTro5.chr15              18019446 21 -  83230942 actgccctaggccc--aaccaag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245710 21 -  99763055 actgccctaggccc--aaccaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308361 21 +    378907 actgccctaggccc--agCCAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163925 21 + 121039945 actgccctaggccC--AACCACG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375213 21 + 169600520 actGCCCTAGGCCC--AACCAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366894 21 - 171882078 actgccctaggccc--tacCAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363620 21 -   6271500 gctgccctaggccc--aaccaag
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1825164 21 -   1987038 actGCCCTAGGCCC--AACCAAG
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503539 21 -   9444221 gctGCCCAACACCC--AACCAAG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033417 21 + 132174527 gctGCCCTAGCCCC--AGCCAAG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             531586 21 -   3282555 gctGCCCTGGCCCC--AACCAAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315516 21 -   1024465 gctgccctagcccc--aaccaag
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       761147 21 -   3745603 gctgccctagcccc--aaccaag
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6784472 21 -  36342412 gctTGCCTAGGCTC--AGCCAGC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 76700 21 -  40214260 GCTCTCGTAGGCTC--AGCCAGC
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              74731 23 -   2180720 GCTCCCCAAGGCTCAGAGTCAGC
i dasNov3.JH569975          I 2890 C 0
e micMur3.chr3                 944481 1609 - 119751181 I
e proCoq1.NW_012149419v1       668667 180 -   2566024 I
e mm10.chr9                  55195620 3487 + 124595110 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=1033936.000000
s hg38.chr15_KI270850v1_alt    209771 80 +    430880 AGGAGCTGAGAGCAAGCCACGGGG-CAGAAGGATGTTGG--AGGCTGGTTTTCTGTTCAGTTAACATGAAATGCAGGCTGTAA
s panTro5.chr15              18019467 80 -  83230942 AGGAGCTGAGAGCAAGCCACGGGG-CAGAAGGATGTTGG--AGGCTGGTTTTCTGTTCAGTTAACATGAAATGTAGGCTGTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245731 80 -  99763055 AGGAGCTGAGAGCAAGCCACGGGG-CAGAAGGATGTTGG--AGGCTGGTTTTCTGTTCAGTTAACATGAAATGTAGGCTGTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308382 80 +    378907 AGGAGCTGAGAGCAAGCCACGGGG-CAGAAGGATGTTGG--AGGCTGGTTTTCTGTTCAGTTAACATGAAATGCAGGCTGTAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102163946 80 + 121039945 AGGAGCTGAGAGAAAGCCATGGGG-CAGAAGGATGTTGG--AAGCTGGTTTTCTGTTCAGTTAACATGAAATGCAGGCTGTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375234 82 + 169600520 AGGAGCTGAGAGCAAGCCATGGGG-CAGAAGGATGTTGGTCAGGCTGGTTTTCTGTTCAGTTAACATGAAACGCAGGCTGTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366915 82 - 171882078 AGGAGCTGAGAGCAAGCCATGGGG-CAGAAGGATGTTGGTCAGGCTGGTTTTCTGTTTAGTTAACATGAAATGCAGGCTGTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363641 82 -   6271500 AGGAGCTGAGAGCAAGCCATGGGG-CAGAAGGATGTTGGTCAGGCTGGTTTTCTGTTTAGTTAACATGAAGTGCAGCCTGTAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1825185 82 -   1987038 AGGAGCTGAGAGCAAGCCATGGGG-CAGAAGGATGTTGGTCAGGCTGGTTTTCTGTTCAGTTAACATGAAACGCAGGCTGTAA
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503560 82 -   9444221 AGGAGCTGAGAGCAAGACACAGGG-CAGAATGATGTTGGTCAGGCTGGTTTTCTGTTCAGTTAACACGAAACGCAGGCTGTAA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033438 77 + 132174527 AGGAGCTGAGGGCAAGCCATGAGG-CATAAGAATGTTGGTCAGACTAATTTTCTGTTAA-----CGTGAAACATAGGTTGTAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             531607 63 -   3282555 AGGAGCTGAGAGCAAGCCATGGGG-CATAAGAATGTTGGTCAGACTGATTTTCTGTTCA-----------------GTTAT--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315537 82 -   1024465 AGGAGCTGAGAGCAAGCCATGGGG-CATAAGAATGTTGGTCAGACTGATTTTCTGTTCAGTTAACGTGAAACATAGGTTGTAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       761168 82 -   3745603 AGGAGCTGAGAGCAAGCCATGGGG-CATAAGAATGTTGGTCAGACTGATTTTCTGTTCAGTTAACGTGAAACATAGGTTGTAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 946090 82 - 119751181 AGGAGCTGAGAGCCAGCTATGAGG-TAGAAGGATATTGATCAGGCTGATTTTCTGTTCAGTTAACATGAACCACAGGGTGTAA
i micMur3.chr3              I 1609 C 0
s proCoq1.NW_012149419v1       668847 82 -   2566024 AGGAGCTGAGAGCCAGCCATGAGA-CAGAAGGATGTTGGTCAGGCTGGTTTTCTGTTCAGTTAACATGAAACACAGGGTGTAA
i proCoq1.NW_012149419v1    I 180 I 97
s otoGar3.GL873530            6784493 82 -  36342412 GGGAGCTGAGAGCCAGCCGTGGGG-CAGAAGGAAGTTGATCAGGCTGGTTTTCTGTTCAGTTAACATGAATCACAGGGTATTA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55199107 81 + 124595110 AGGAG-TGAGAACAAGTCATGGAGTTAGAAGGATGTAGGCCAGGGTG-TTTCCTGTTCAATTACTAGGAAATAAAGTCTGTAG
i mm10.chr9                 I 3487 C 0
s canFam3.chr30                 76721 82 -  40214260 AGGAGCTGAGAGTAAGCCATGGGG-CAGAAGGATGTCGGCCAGGCTGGTTTTCTGGTCAGTTAACATGGGCTACAGGCTGTAA
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              74754 82 -   2180720 AGAAGCTAACAGCAAGCCATGGGG-CAGAAGGATGCTCGCCAAGCTGATTTTCTGTTCCATTAACATGGAAAACAGGCAGTAA
i dasNov3.JH569975          C 0 C 0
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=362582.000000
s hg38.chr15_KI270850v1_alt    209851 38 +    430880 CCGTAATTCCAGGACAT--TACTGAGAAAGCCTTCCAAAG
s panTro5.chr15              18019547 38 -  83230942 CCTTAATTCCAGGACAT--TACTGAGAAAGCCTTCCAAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245811 38 -  99763055 CCTTAATTCCAGGACAT--TACTGAGAAAGCCTTCCAAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308462 38 +    378907 CCTTAATTCCAGGACAT--TACTGAGAAAGCCTTCCAAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102164026 38 + 121039945 CCTTAATTCTAGGACAT--TACTGAGAAAGCCTTCCAAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375316 38 + 169600520 TGTTAATTCTAGGACAT--TACTGAGAAAGCTTTCCAAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107366997 38 - 171882078 CCTTAATTCTAGGACAT--TACAGAGAAAGCCTTCCAAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363723 38 -   6271500 CCTGAATTCTAGGACAT--TACTGAGAAAGCCTTCCAAAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1825267 38 -   1987038 CGTTAACTCTAGGACAT--TACTGAGAAAGCTTTCCAAAG
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503642 38 -   9444221 CCCTAATTCTAGGACAT--TACTGAGAAAGGCTTCCAAAG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033515 38 + 132174527 CGTTAATTTTAGGACAT--TAGCAAGAAAGCCTTCCAAAG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             531670 36 -   3282555 --TTAATTTTAGGACAT--TAGCAAGAAAGCCTTCCAAAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315619 38 -   1024465 CATTAATTTTAGAACAT--TAGCAAGAAAGCCTTCCAAAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       761250 38 -   3745603 CGTTAATTTTAGGTCAT--TAGCAAGAAAGCCTTCCAAAG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 946172 40 - 119751181 CATCAACTCTAGGACATACTAGTGAGAAAGCCTTCCAAAG
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6784575 37 -  36342412 CATCAACTGTAGAACA---TAGTGAGGAAGCCTTCTAAAG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55199188 40 + 124595110 CATTAACTTGGGGCTATACAAATAATAAATTCTTTCAGAG
i mm10.chr9                 C 0 I 117
s canFam3.chr30                 76803 40 -  40214260 CATTAACTCCAGGCTGTAGTAATGAGAAAGCCTTCTAAAG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              74836 25 -   2180720 -ATTAGCTCCAGAAAAC--T------------CTCCAAAT
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       668929 97 -   2566024 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=3684.000000
s hg38.chr15_KI270850v1_alt    209889 1 +    430880 -C
s panTro5.chr15              18019585 1 -  83230942 -C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245849 1 -  99763055 -C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308500 1 +    378907 -C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102164064 1 + 121039945 -C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375354 1 + 169600520 -C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107367035 1 - 171882078 -C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363761 1 -   6271500 -C
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1825305 1 -   1987038 -C
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503680 1 -   9444221 -C
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033553 1 + 132174527 -C
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             531706 1 -   3282555 -C
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315657 1 -   1024465 -C
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       761288 1 -   3745603 -C
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 946212 1 - 119751181 -C
i micMur3.chr3              C 0 I 37
s otoGar3.GL873530            6784612 1 -  36342412 -C
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 76843 1 -  40214260 -T
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              74861 1 -   2180720 G-
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       668929 97 -   2566024 I
e mm10.chr9                  55199228 117 + 124595110 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=-44017.000000
s hg38.chr15_KI270850v1_alt    209890 40 +    430880 --CAGAGGGg------------ttttttttgttttgttttgttttgttttCCAT
s panTro5.chr15              18019586 40 -  83230942 --CAGAGGGg------------ttttttttgttttgttttgttttgttttCCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245850 40 -  99763055 --CAGAGGGg------------ttttttttgttttgttttgttttgttttCCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308501 40 +    378907 --CAGAGGGt------------tgtttttttgtttgttttgttttgtttTCCAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102164065 36 + 121039945 --CAGAGG----------------tttttttttttttttttttttttAAACCAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375355 51 + 169600520 --CAGAGGTG-TtttttgtttttgtttttgtttttgttttgtttttTTCACCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107367036 21 - 171882078 --CAGAGGTT---------------------TTCTTTTT----------ACCAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363762 31 -   6271500 --CAGAGGTG---------------------TTTTGTTTTGCTTTTTGAACCAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1825306 52 -   1987038 --CAGAGGTGtttttttgtttttttttttttttttttttttgtttttttACCAT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503681 23 -   9444221 --CGTAGGTT---------------------TTTTTTTTTT--------ACCAT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033554 12 + 132174527 --CAGATGTT---------------------TCTT-------------------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             531707 12 -   3282555 --CAGATGTT---------------------TCTC-------------------
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315658 12 -   1024465 --CAGATGTT---------------------TCTT-------------------
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       761289 12 -   3745603 --CAGATGTT---------------------TCTT-------------------
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6784613 11 -  36342412 ---AGAGGTC---------------------TGTT-------------------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 76844 11 -  40214260 ---AGAGTTC---------------------TTCT-------------------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              74862 13 -   2180720 GAATAAGGTC---------------------TAC--------------------
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 946213 37 - 119751181 I
e proCoq1.NW_012149419v1       668929 97 -   2566024 I
e mm10.chr9                  55199228 117 + 124595110 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=147055.000000
s hg38.chr15_KI270850v1_alt    209930 31 +    430880 GACCATGACTTTTGAGCAAAAATTTGGTTTT
s panTro5.chr15              18019626 31 -  83230942 GACCATGACTTTTGAGCAAAAATTTGGTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245890 31 -  99763055 GACCATGACTTTTGAGCAAAAATTTGGTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308541 31 +    378907 GACCATGACTTTTGAGCAAAAATTTGGTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102164101 31 + 121039945 AACTATGACTTTTGAGCAAAAATTTGGTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375406 31 + 169600520 GACCAAGACTTTTTAGCAAAAGTTTGATTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107367057 31 - 171882078 GACCATGACTTTTTAGCAAAAATATGATTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363793 30 -   6271500 GACCATGAC-TTTTAGCAAAAATTTGATTTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1825358 31 -   1987038 GACCAAGACTTTTTAGCAAAAGTTTGATTTT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503704 27 -   9444221 GATCCTGAC-TTTTAGCAAGAATTTG---TG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033566 28 + 132174527 -ACCATGAT-TTTTAGCAAGAATTTG-TAGT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             531719 28 -   3282555 -ACCATGAC-TTTTAGCAAGAATTTG-TGGT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315670 28 -   1024465 -ACCATGAC-TTTTAGCAAGAATTTG-TGGT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       761301 28 -   3745603 -ACCATGAC-TTTTAGCAAGAATTTG-TGGT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6784624 25 -  36342412 -GTCATGAC--TTTAATAGGAATTTTAG---
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55199345 29 + 124595110 gaccctatcttcaaaaCTAAAAACTGAAT--
i mm10.chr9                 I 117 C 0
s canFam3.chr30                 76855 24 -  40214260 -ATTATGAC---TTGGCAAGAATTTGGG---
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              74875 27 -   2180720 TATCATGGC-TTTTAGGAGGAATTTGGG---
i dasNov3.JH569975          C 0 C 0
e micMur3.chr3                 946213 37 - 119751181 I
e proCoq1.NW_012149419v1       668929 97 -   2566024 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=261624.000000
s hg38.chr15_KI270850v1_alt    209961 29 +    430880 GTTT--AAAGGCAATATGGTGCTCTAAGAAA
s panTro5.chr15              18019657 29 -  83230942 GTTT--AAAGGCAATATGGTGCTCTAAGAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245921 29 -  99763055 GTTT--AAAGGCAATATGGTGCTCTAAGAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308572 29 +    378907 GTTT--AAAGGCAATATGGTGCTCTAAGAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102164132 29 + 121039945 GTTT--AAAGGCAACATGGTGCTCTAAGAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375437 29 + 169600520 GTTT--AAAGGCAACATGGTGTTCTAAGAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107367088 29 - 171882078 GTTT--AAAGGCAACATGGTGTTCTAAGAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363823 29 -   6271500 GTTT--AAAGACAACATGGTGCTCTAAGATG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1825389 29 -   1987038 GTTT--AAAGGCAACATGGTGCTCTAAGAAG
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503731 29 -   9444221 ATTT--AAAGGCAACATGGTGCTCTAAGAAG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033594 29 + 132174527 TTTT--AAAGGCAAGATAGTGCTCTAAGAAG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             531747 29 -   3282555 TTTT--AATGGCAAGATGGTGCTCTAAGAAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315698 29 -   1024465 TTTT--AAAGGCAAGATGGTGCTCTGAGAAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       761329 29 -   3745603 TTTT--AAAGGCAAGATGGTGCTCTAAGAAG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 946250 29 - 119751181 GTTT--AAAGGCAAGATAGTGCTCAAAGAAG
i micMur3.chr3              I 37 C 0
s otoGar3.GL873530            6784649 29 -  36342412 GTTC--AAAGGCAAGATAGTGCTCTAAGAAG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55199374 21 + 124595110 -------AAAGCAAGCTAATGTGTTAAA---
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 76879 14 -  40214260 GTTTGGATAGGCAA-----------------
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              74902 20 -   2180720 GTTT--AGAGGCAAGATGGTAG---------
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       668929 97 -   2566024 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=342587.000000
s hg38.chr15_KI270850v1_alt    209990 36 +    430880 CTTCCACTCACA--CTTAT-GGAGGGAATGGTAGTTGAG
s panTro5.chr15              18019686 36 -  83230942 CTTCCACTCACA--CTTAT-GGAGGGAATGGTAGTTGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245950 36 -  99763055 CTTCCACTCACA--CTTAT-GGAGGGAATGGTAGTTGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308601 36 +    378907 CTTCCACTCACA--CTTAT-GGAGGGAATGGTAGTTGAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102164161 36 + 121039945 CTTCCACTCACA--CTTAT-GGAGGGAATAGTAGTTGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375466 38 + 169600520 CTTCCACTCACACTCTTGT-GGAGGGAATGGTAGTTGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107367117 38 - 171882078 CTTCCACTCACACTCTTGT-GGAGGGAATGGTAGTTGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363852 38 -   6271500 CTTCCATTCGCACTCTTGT-GGAGGGAATGGTAGTTGAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1825418 37 -   1987038 CTTCCATTCACACTCTTAT-GGAGGG-ATGGTAGTTGAG
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503760 36 -   9444221 CTTCCATTCT--TTCTTAT-GGAGGGACTGGTAGTTGAG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033623 33 + 132174527 CTTCCATTCAC-----TAT-GGAGGGAACGGTAGTTGAG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             531776 33 -   3282555 CTTCCATTCAC-----TAT-GAAGGGAATGGTAGTTGAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315727 33 -   1024465 CTTCCATTCAC-----TAT-GGAGGGAATGGTAGTTGAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       761358 33 -   3745603 CTTCCATTCAC-----TAT-GGAGGGAATGGTAATTGAG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 946279 36 - 119751181 CTTCCATTCACT--ATTAT-GGACAGAATGGTAGTTGAG
i micMur3.chr3              C 0 C 0
s proCoq1.NW_012149419v1       669026 36 -   2566024 CTTCCATTCACT--ATTAT-GGAGGGAATGGTAGTTGAG
i proCoq1.NW_012149419v1    I 97 I 49
s otoGar3.GL873530            6784678 37 -  36342412 CTTCCATTCACT--ATTATGGGAGGGAATGGTAGTTGAG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55199395 31 + 124595110 ----CATGCAT---GTTAC-AGAGGGACCATCTGTCAAT
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 76893 35 -  40214260 GGTTCATTCAC---CGCAT-AGAAGGCATGATAGTTGGG
i canFam3.chr30             C 0 I 4
s dasNov3.JH569975              74922 29 -   2180720 CTTCCATTCAC---TATAC-AGAAGGAATGATA------
i dasNov3.JH569975          C 0 C 0
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=694574.000000
s hg38.chr15_KI270850v1_alt    210026 70 +    430880 CTAAATAGTGAAATGCTGTAGCACA-CAGCCTTTA-GGGCAGCTTCTGACCTATTTCTATGGTCAGGAAAGA
s panTro5.chr15              18019722 70 -  83230942 CTAAATAGTGAAATGCTGTAGCACA-CAGCCTTTA-GGGCAGCTTCTGACCTATTTCTATGGTCAGGAAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17245986 70 -  99763055 CTAAATAGTGAAATGCTGTAGCACA-CAGCCTTTA-GGGCAGCTTCTGACCTATTTCTATGGTCAGGAAAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308637 70 +    378907 CTAAATAGTGAAATGCTGTAGCACA-CAGCCTTTA-GGGCAGCTTCTGACCTATTTCTATGGTCAGGAAAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102164197 70 + 121039945 CTAAATAGTGAAATGCTGTAGGACA-CAGCCTTTA-GGGCAGCTTCTGACCTATTTCTATGGTCAGGAAAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375504 70 + 169600520 CTAAATAGTGAAATGCTGTAGCACA-CAGCCTTTA-GGGCAGCTTCTGACCTATTTCTATGGTCAGGAGAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107367155 69 - 171882078 CTAAATAGTGAAATGCTGCAGCACA-TGGCCTTTA--GGCAGCTTCTGACCTATTTCTATGGTCAGGAAAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363890 70 -   6271500 CTAAAGAGTGAAATGCTGCAGCACA-CAGCCTTTA-GGGCAGCTTCTGACCTATTTCTATTTTCAGGAAAGA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1825455 70 -   1987038 CTAAATAGTGAAATGCTGTAGCACA-CAGCCTTTA-GGGCAGCTTCTGACCTATTTCTATGGTCAGGAAAGA
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503796 70 -   9444221 CTAAATAGTGAAATCCTGGAGCACA-CAGCCTTTA-GGGCAGCTTCTGACCTATTTCTATGGTCAGAAAAGA
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033656 70 + 132174527 TTAAATAGTGAAATGCTGGAGCACA-CAGCCTTTA-GGGCAGCTTCTGACCTCTTTCTGTGGTCAGGGAAGG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             531809 70 -   3282555 TTAAATAATGAAATGCTGGAGCACA-CAGCCTTTA-GGGCAGCTTCTGACCTCTTTCCATGGTCAGGAAAGG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315760 70 -   1024465 TTGAATAGTGAAATGCCGGAGCACA-CAGCCTTTA-GGGCAGCTTCTGACCTCTTTCTATTGTCAGGAAAGG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       761391 70 -   3745603 TTAAATAGTGAAATGCTGGAGCAGA-CAGCCTTTA-GGGCAGCTTGTGACCTCTTTCTATGGTCAGGAAAGG
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 946315 68 - 119751181 --TTACAGTGAAATCTTGGAGCACA-CAACCCTTG-GGGCAGCTCCTGACCTATTTCTCTAGTCAGGAAGGG
i micMur3.chr3              C 0 C 0
s otoGar3.GL873530            6784715 23 -  36342412 --TTATACTGAAATCTTAGAGAACA-----------------------------------------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55199426 66 + 124595110 ---GATAGTGAAGTCCTAGAACACA-CAGCC-TTG-GGGCAGTGCTGACCCTGTTTCTGCAATCAGGATAGG
i mm10.chr9                 C 0 C 0
s canFam3.chr30                 76932 71 -  40214260 ATAAATAGTCAAATCCTAGAGCACAGCAACTGTTG-GAGTAGCTCCTAAACTATTTCTACAATCAGGAAAGG
i canFam3.chr30             I 4 C 0
s dasNov3.JH569975              74951 66 -   2180720 ---AATGGTGAAATCTCAGAGCACA-TAGTCCTTGGGGGCAG--TCCTACCAATTTCTATAATCAGGAAAGG
i dasNov3.JH569975          C 0 C 0
e proCoq1.NW_012149419v1       669062 49 -   2566024 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=279654.000000
s hg38.chr15_KI270850v1_alt    210096 26 +    430880 CACC----TATCTTTGCCTGCTGCCCACAG
s panTro5.chr15              18019792 26 -  83230942 CACC----TATCTTTGCCTGCTGCCCACAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17246056 26 -  99763055 CACC----TATCTTTGCCTGCTGCCCACAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308707 26 +    378907 CACC----TATCTTTGCCTGCTGCCCACAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102164267 26 + 121039945 CACC----TATCTTTCCCTGCTGCCCACAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375574 26 + 169600520 CACC----TATCTTTCCCTGCTGCCCACAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107367224 26 - 171882078 CACC----CATCTTTCCCTGCTGCCCACAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363960 26 -   6271500 CACC----CATCTTTCCCTGCTGCCCACAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1825525 26 -   1987038 CACC----TATCTTTCCCTGCTGCCCACAG
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503866 26 -   9444221 CACT----TGTCTTTCGCTGCTGCCCATAG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033726 26 + 132174527 CACC----TATCTTTCCCTGCTGCCCATAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             531879 26 -   3282555 CCCC----TATCTTTCCCTGCTGCCCATAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315830 26 -   1024465 CACC----TATCTTTCCCTGCTGCCCATAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       761461 26 -   3745603 CACC----TATCTTTCCCTGCTGCCCATAA
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 946383 26 - 119751181 CACT----TACCTTCCCCCACTGCCTGCAG
i micMur3.chr3              C 0 I 1
s proCoq1.NW_012149419v1       669111 26 -   2566024 CACT----TATCTTTCCCCACTGCCCACAG
i proCoq1.NW_012149419v1    I 49 I 1
s otoGar3.GL873530            6784738 10 -  36342412 --------------------CTGCCCATAG
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  55199492 25 + 124595110 -AGC----CTTCTGTTGCTGCCACCTACTG
i mm10.chr9                 C 0 I 26
s canFam3.chr30                 77003 30 -  40214260 CACCAATAAATCATTCCCTGTTGCCCATAG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              75017 26 -   2180720 TGAC----TTTCTTTCCTTATTTCCTGTAG
i dasNov3.JH569975          C 0 I 1
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=43551.000000
s hg38.chr15_KI270850v1_alt    210122 3 +    430880 CCT
s panTro5.chr15              18019818 3 -  83230942 CCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17246082 3 -  99763055 CCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308733 3 +    378907 CCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102164293 3 + 121039945 CCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375600 3 + 169600520 CCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107367250 3 - 171882078 CCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363986 3 -   6271500 CCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1825551 3 -   1987038 CCT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503892 3 -   9444221 CCT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033752 3 + 132174527 CCT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             531905 3 -   3282555 CCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315856 3 -   1024465 CCT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       761487 3 -   3745603 CCT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 946410 3 - 119751181 CCT
i micMur3.chr3              I 1 C 0
s proCoq1.NW_012149419v1       669138 3 -   2566024 CCT
i proCoq1.NW_012149419v1    I 1 C 0
s otoGar3.GL873530            6784749 3 -  36342412 CCT
i otoGar3.GL873530          I 1 C 0
s canFam3.chr30                 77033 3 -  40214260 ACT
i canFam3.chr30             C 0 I 281
s dasNov3.JH569975              75044 3 -   2180720 CTT
i dasNov3.JH569975          I 1 C 0
e mm10.chr9                  55199517 26 + 124595110 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=683904.000000
s hg38.chr15_KI270850v1_alt    210125 67 +    430880 CTAGTTATTCACCTTCAGAATTTCCTAGTCTGTGATCACATTCAGAT--GAGAGATCCGTTTTG-TTTTT
s panTro5.chr15              18019821 67 -  83230942 CTAGTTATTCACCTTCAGAATTTCCTAGTCTGTGATCACATTCAGAT--GAGAGATCCGTTTTG-TTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17246085 67 -  99763055 CTAGTTATTCACCTTCAGAATTTCCTAGTCTGTGATCACATTCAGAT--GAGAGATCCGTTTTG-TTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308736 67 +    378907 CTAGTTATTCACCTTCAGAATTTCCTAGTCTGTGATCACATTCAGAT--GAGAGATCCGTTTTG-TTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102164296 67 + 121039945 CTAGTTATTCACCTTCAGAATTTCCTAGTCTGTGATCACATTCAGAT--GAGAGATCTGTTTTG-TTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375603 67 + 169600520 CCAGCTATTCACCTTCAGAATTTCTCAGTCTGTGATCACATTCCGAT--GAGAGATCTGCTTCG-TTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107367253 67 - 171882078 CCAGCTATTCACCTTCAGAATTTCCTAGTCTGTGATCACATTCCGAT--GAGAGATCTGCTTTG-TTTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5363989 67 -   6271500 CCAGTTATTCACCTTCAGAATTTCCTAGTCTGTGATCACATTCAGAT--GAAAGATCTGTTTTG-TTTCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1825554 67 -   1987038 CCAGCTATTCACCTTCAGAATTTCCTAGTCTGTGATCACATTCCGAT--GAGAGATCTGCTTTG-TTTTT
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503895 67 -   9444221 CCAGTTATTCACCTTCAGAATTTCCTAGACTATGATCACATTCAGAT--GAGAGATCTGTTTTG-TTTTT
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033755 66 + 132174527 CCAGTCATTCTCTTACAGAATCCCCTAGACTGTGATCATATTCAGAT--GAGAGATCTGTTTTG--TTTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             531908 66 -   3282555 CCAGTCATTCTCTTACAGAATCCCCTAGACTGTGATCATATTCAGAT--GAGAGAT-TGTTTTG-TTTTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315859 66 -   1024465 CCAGTCATG-TTTTACAGAATCCCCTAGACTGTGATCATATTCAGAT--GAGAGAT-TGTTTTGTTTTTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       761490 66 -   3745603 CCAGTCATTCTCTTACAGAATCCCCTAGAGTGTGATCATATTCAGAT--GAGAGATCTGTTTTG--TTTT
i aotNan1.NW_018511953v1    C 0 C 0
s micMur3.chr3                 946413 63 - 119751181 CCAGTGATTCACCTACATAATCCCCTAGTT----ATCACATTCAGGT--GAGAGATCTGTTTTG-TTTTT
i micMur3.chr3              C 0 N 0
s proCoq1.NW_012149419v1       669141 69 -   2566024 CCAGTGATTCAACTACAAAATCCCCTAGTTAGTGATCACATTCAGGTGAGAGAGATCTGTTTTG-TTCTT
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6784752 67 -  36342412 CCAGTGATTCACCTGTagaatcccctagtcagtgatcacattcaggt--gagagatctgtttta-ttttt
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              75047 66 -   2180720 CCAGTTATTCACTCACAGAAT-CCTTAGTAAGTAATCACATTCAGAT--GAGAGATCTTTTTTT-TTTTT
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55199517 26 + 124595110 I
e canFam3.chr30                 77036 281 -  40214260 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=89492.000000
s hg38.chr15_KI270850v1_alt    210192 10 +    430880 TCCAGGGTAG
s panTro5.chr15              18019888 10 -  83230942 TCCGGGGTAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17246152 10 -  99763055 TCCAGGGTAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308803 10 +    378907 TCCAGGGTAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102164363 10 + 121039945 TCCAGGGTAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375670 10 + 169600520 TCCAGGGTAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107367320 10 - 171882078 TCCAGGGTAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5364056 10 -   6271500 TCCAGGGTAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1825621 10 -   1987038 TCCAGGGTAG
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503962 10 -   9444221 TCCAGGGTAG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033821 10 + 132174527 TCCAGGGTAG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             531974 10 -   3282555 TCCAGGGTAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315925 10 -   1024465 TCCGGGGTAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       761556 10 -   3745603 TCCAGGGTAG
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       669210 10 -   2566024 TGCAAGGCAG
i proCoq1.NW_012149419v1    C 0 C 0
s otoGar3.GL873530            6784819 10 -  36342412 tcctaggcaa
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH569975              75113  2 -   2180720 TC--------
i dasNov3.JH569975          C 0 C 0
e mm10.chr9                  55199517 26 + 124595110 I
e canFam3.chr30                 77036 281 -  40214260 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=715715.000000
s hg38.chr15_KI270850v1_alt    210202 86 +    430880 CAGGAAGTGAGTCACCACCTATACTAAGCAGTCTAGTCTTCTGTGTATAAATGAGCAAGGGTGGGGAGCCAGATCTGAGAACCTTG
s panTro5.chr15              18019898 86 -  83230942 CAGGAAGTGAGTCACCACCTATACTAAGCAGTCTAGTCTTCTGTGTATAAATGAGCAAGGGTGGGGAGCCAGATCTGAGAACCTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17246162 86 -  99763055 CAGGAAGTGAGTCACCACCTATACTAAGCAGTCTAGTCTTCTGTGTATAAATGAGCAAGGGTGGGGAGCCAGATCTGAGAACCTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308813 81 +    378907 CAGGAAGTGAGTCACCACCTATACTAAGCAGTCTA-----CTGTGTATAAATGAGCAAGGGTGGGGAGCCAGATTGGAGAACCTTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102164373 86 + 121039945 CAGGAACTGAGTCACCACCTATACTAAGCAGTCTAGTCTTCTGTGTATAAATGAGCAAGGTTGGGGAGCCAGATTTGAGAACCTTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375680 86 + 169600520 CAGGAAGTGAGTCACCACCTGTACTAAACAGTCTAGTCTTCTGTGTATAAATGAGTAAGGTTGGGGAGCCAAATTTGAGAACCTTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107367330 86 - 171882078 CAGAAAGTGAGTCACCACCTGTACTAAGCAGTCTAGTCTTCTGCGTATAAATGAGCAAGGTTGGGGAGCCAAATTTGAGAACCTTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5364066 86 -   6271500 GAGGAAGGGAGTCACCACTTATACTAAGCAGTCTAGTCTTCTGTGTATAAATGAGCAAGGTTGGGGAGCCAAATTTGAGAACCTTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1825631 86 -   1987038 CAGGAAGTGAGTCACCACCTGTACTAAACAGTCTAGTCTTCTGTGTATAAATGAGCAAGGTTGGGGAGCCAAATTTGAGAACCTTG
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7503972 86 -   9444221 GAGGAAGTGAGTCACCACCTATACTAAGCTGTCTAGTCTTCTGTATATAAATGAGCAAGGTCGGGAAGCCAAATTTGAGAACCTTG
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033831 75 + 132174527 GAGGAAGTGAGTCACCACCTATGCTAAGCAGTCTAA---TCTGTG--TAGATGAGCAAGGTTGGGGAGCCAAATCT------CTTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             531984 78 -   3282555 GAGGAAGTGAGTCAACACCTATACTAAGCAGTCTAATCTTCTGTG--TAAATGAGCAAGGTTGAGGAGCCAGATCT------CTTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       315935 78 -   1024465 GAGGAAGTGAGTCACCACCTATACTAAGCAGTCTAATCTTCTGTG--TAAGTGAGCAAGGTTAGGGAGCCAAATTT------CTTG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       761566 78 -   3745603 GAGGAAGTGAGTCACCACCTATACTAAGCAGTCTAATCTTCTGTG--TAAATGAGCAAGGTTGGGGAGCCAAATCT------CTTG
i aotNan1.NW_018511953v1    C 0 C 0
s proCoq1.NW_012149419v1       669220 86 -   2566024 TGGGGAGCGAGTGGCTACCTACACTAAGCAGTCTAGTCTTCTCTTTGTAAAGTAGCAAGCTTGCAGAGCCAAATCTGAGAACCTTG
i proCoq1.NW_012149419v1    C 0 N 0
s otoGar3.GL873530            6784829 83 -  36342412 ggagaatcaagtggctacctataccaagcagtccagtcttttatttataaCAAAG--AGCTCAGGGACCCAAATCTGAGAACTTT-
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55199543 64 + 124595110 CGGGGAGTGACTAATC---------------CCTGGCCCTGTATTCATAAGTGAG-----TTGTGCTGCCAAATATAGGAGCCT--
i mm10.chr9                 I 26 C 0
s dasNov3.JH569975              75115 72 -   2180720 ------------CACTATCCATAATAAGCAGTTCAGATTTCCATTTATAAATGAGTAAGTCT--GGAGCCAAATCTGAGAACCTTG
i dasNov3.JH569975          C 0 C 0
e canFam3.chr30                 77036 281 -  40214260 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=1474450.000000
s hg38.chr15_KI270850v1_alt    210288 189 +    430880 TGTAATGCTGAGATGCTCCAAGAGAATCCAAGAGGATGTCAGGATTATGCATGGTGG-taaagtggtctcatgttagttgtacccacagctctcatcagaagcagacacagatactttttgtag--gaaaacatctctaacttaagcctgtaggattcccaaagattaaaagcaggcaaata-tgaatt--cagt
s panTro5.chr15              18019984 189 -  83230942 TGTAATGCTGAGATGCTCCAAGAGAATCCAAGAGGATGTCAAGATTATGCATGGTGG-taaagtggtctcatgttagttgtacccacagctctcatcagaagcagacacagatactttttgtag--gaaaacatctctaacttaagcctgtatgattcccaaagattaaaagcaggcaaata-tgaatt--cagt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17246248 189 -  99763055 TGTAATGCTGAGATGCTCCAAGAGAATCCAAGAGGATGTCAAGATTATGCATGGTGG-taaagtggtctcatgttagttgtacccacagctctcatcagaagcagacacagatactttttgtag--gaaaacatctctaacttaagcctgtatgattcccaaagattaaaagcaggcaaata-tgaatt--cagt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       308894 189 +    378907 TGTAATGCTGAGATGCTCCAAGAGAATCCAAGAGGATGTCAGGATTATGCATGGTGG-taaagtggtctcatgttagttgtacccacagctctcatcagaagcagacacagatactttttgtag--gaaaacatctctaacttaagcctgtaggattcccaaagattaaaagcaggcaaata-tgaatt--cagt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102164459 189 + 121039945 TGTAATGCTGAGATGCTCCAAGAGAATCCAAGGGAATGTCAGGATTATGTATGGTGG-TCTagtggtctcatgttagttgtacccagagttctcatcagaagcagacacagatactttttgtag--gaaagcatctctaacttaagcctgtaggattcccaaagattaaaagcaggcaaata-tgaatt--cagt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375766 189 + 169600520 TGTAATCCTGAGATTCTCCAGGAGAATCCAAGAGCATGTCAGGATTATGCATGGTGG-taaagtggtctcatgttagttgtatccacagctctcgtcagaagcagacacagatactttttgcaa--gaaggcatctctaacttaagcctgtaggattcccaaagattaaaagcaggcaatta-tgaatt--cagt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107367416 189 - 171882078 TGTAATCCTGAGATTCTCCAAGAGAATCCAAGAGCATGTCAGGATTATGCATGGTGG-taaagtggtctcatgttagttgtatccacagctctcatcagaagcagacacagatattttttgtag--gaaagcatctctaacttaagcctgtaggattcccgaagattaaaagcaggcaacta-tgaatt--cagt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5364152 189 -   6271500 TGTAATGCTGAGATTCTCCAAGAGAATCCAAGAGAATGTCAGGATTATGCATGGTGG-taaagtggtctcatgttagttgtgccgacagctctcatcagaagcagacacagatactttttgtag--gaaagcatctctaccttaagcctgtaggattcccaaagattaaaagcaggcaaata-tgaatt--caGT
i macNem1.NW_012011056v1    C 0 M 150
s cerAty1.NW_012002657v1      1825717 189 -   1987038 TGTAATCCTGAGATTCTCCAGGAGAATCCAAGAGCATGTCAGGATTATGCATGGTGG-taaagtggtctcatgttagttgtatccacagctctcgtcagaagcagacacagatactttttgcag--gaaggcatctctaacttaagcctgtaggattcccaaagattaaaagcaggcaatta-tgaatt--cagt
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7504058 189 -   9444221 TGTAATCCTGAGATTCTCCAAGAGAATCCAAGAGAATGTCAGGATTACGCATGGCGG-taaagtggtctcatgttagttgtctccacagctctcatcagaagcagacacagatactttttgtag--gaaagcatctctaacttaagcctgtaggattcccagtgattaagagcaggcaacta-tgaatt--cagt
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18033906 158 + 132174527 -------------------------------GAGAATCTCAGGATTATGCAAGATGG-taaagtagtctcatgttagtggtatctgcaacttttatcagaagcagacacagatgctttatatag--gaagggatctctaatttaagcctgtaggattcccagagtttagaagcaggcaaata-tgaatt--cagt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             532062 158 -   3282555 -------------------------------CAGAATCTCAGGATTATGCAAGATGG-taaagtagtctcatgttagaggtatctgcagctgttatcagaagcagacacagatgctttttgtag--gaaaggatctctaatttaagcctgtaggattcccagagattaaaagcaggcaaata-tgaatt--cagt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       316013 158 -   1024465 -------------------------------GAGAATCTCAGGATTATGCAAGATGG-taaagtagtctcatgttagtggtatctacaactgttatcagaagcagacacagatgctttttgtag--gaaaggatctctaatttaagcctgtaggattcccagagattaaaagcaggcaaata-tgaatt--cagt
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       761644 157 -   3745603 -------------------------------GAGAATCTCAGGATTATGCAATATGG-taaagtagtctcat-ttagtggtatctgcaacttttatcagaagcagacacagatgctttttgtag--gaaaggatctctaatttaagcctgtaggattcccagagattaaaagcaggcaaata-tgaatt--cagt
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6784912 160 -  36342412 CATAAAACTGAGATTCTCTAGGGG-------GCGAGT-------------------------GGGGTCTTATTTTAGTTGTAGCCACAGCTATCTTTagaagcaggcatggatactttctggaggagaaaacatctcttatttaagccttcaggattcccagagattaaagttaagcaagca-tgaatt--tagt
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55199607 145 + 124595110 ------------------------------------------GATTCTCCACAGGGGCTATTCTGATCCCATGTTAACTGTATTCTCAGCTCTCACCAGAAGCAGACTAA----TCCTCTAGAG--AAAAGTGTTTCTAACTGAAGCTTGTAGGCTTCCCAAGGATTAAAATCAAACAAATAGGGAGTT--CAGT
i mm10.chr9                 C 0 I 2
s dasNov3.JH569975              75187 144 -   2180720 CATAATCCTGAGACTCTCCA------------------------------ATGGGGC-TAAA-----------------ATATCCACAGCTCTCATTagaagcagacacaaatactctatggag--gaaagcatttctaatttaaacctgcaggatttccaaagaatgagataaatcaaata-tggatccacagt
i dasNov3.JH569975          C 0 C 0
e canFam3.chr30                 77036 281 -  40214260 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=1256117.000000
s hg38.chr15_KI270850v1_alt    210477 185 +    430880 --caaat--cat-agcattcaagtagtctcaaccca-acatatttgagaattgttagaaacaatga---------------atatgttt-cccaaagac----taggttttggaattatcagata-cagaacacagacttcaaatattagaatt---------gtgagaaaatagttacatgtcaaacctaatat----------a---aaagaaagatggac-tcattaaattg
s panTro5.chr15              18020173 185 -  83230942 --caaat--cat-agcattcaagtagtctcaaccca-acatatttgagaattgttagaaacaatga---------------atatgttt-cccaaagac----taggttttggaattatcagata-cagaacacagacttcaaatattagaatt---------gtgagaaaatagttacatgtcaaacctaatat----------a---aaagaaagatggac-tcattaaattg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17246437 185 -  99763055 --caaat--cat-agcattcaagtagtctcaaccca-acatatttgagaattgttagaaacaatga---------------atatgttt-cccaaagac----taggttttggaattatcagata-cagaacacagacttcaaatattagaatt---------gtgagaaaatagttacatgtcaaacctaatat----------a---aaagaaagatggac-tcattaaattg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       309083 185 +    378907 --caaat--cat-agcattcaagtagtctcaaccca-acatatttgagaattgttagaaacaatga---------------atatgttt-cccaaagac----taggttttggaattatcagata-cagaacacagacttcaaatattagaatt---------gtgagaaaatagttacatgtcaaacctaatat----------a---aaagaaagatggac-tcattaaattg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102164648 185 + 121039945 --caaat--cat-agcattcaagtagtctcaaccca-acatatttgagaattgttagaaacaatga---------------atatgttt-cccaaagac----taggttttggaattatcagata-cagaacacagacttcaaatattagaatt---------gtgagaaaatagttacatgtgaaacctaatat----------a---aaagaaagacggac-tcataaaattg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60375955 187 + 169600520 --caaat--cat-agcattcaaatag--tcaaccca-atgtatttgagaattgtcagaaacaatgaata------------atatgttt-cccaaagac--tgtagg-tttggaattatcagata-cagaacacagacttcaaatattagaatt---------gtgagaaaatagttacatgtgaaatctaatac----------a---aaaaaaagatgaag-tcataaaattg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107367605 190 - 171882078 --caaat--cat-agcattcaagtagtctcaaccca-acatatttgagaattgtcagaaacaatgaata------------atatgttt-cccaaagac--tgtaggttttggaattatcagata-cagaacacagacttcaaatattagaatg---------gtgagaaaatagttacatgtgaaacctaatat----------a---gaagaaagatggac-tcataaaattg
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1825906 187 -   1987038 --caaat--cat-agcattcaagtag--tcaaccca-atgtatttgagaattgtcagaaacaatgaata------------atatgttt-cccaaagac--tgtagg-tttgaaattatcagata-cagaatacagacttcaaatattagaatt---------gtgagaaaatagttacatgtgaaatctaatac----------a---aaaaaaagatgaag-tcataaaattg
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7504247 198 -   9444221 --gaaat--cac-agcattcaggtag--ttaaccca-acatattttagaattgtcagaaacaatgaatg------------atatgttt-cccaaagac--tataggttttggaatgatcagata-cagaacacagacttcaattattagaatt---------gtgagaaaatagttacttgtgaaatctaatatttatataaaaa---aaaaaaagatggac-ttataaaattg
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18034064 189 + 132174527 --caaat--cat-agcattc----ag--tcaaccca-gcatatttgagaattgtcagaaacaataaataata--------gttatgttt-cccaaagac--tgtaggttttagaattatcagata-cagaaca--gacttcagatactagaatt---------atgagaaaatagttacatgtgaaatctaatat----------aaagaaaaaaagatggaa-tcataaaattg
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             532220 196 -   3282555 --caaat--cat-agcgttcaagtag--tcaaccca-gcatatttgagaattgtcagaaacaataaataata--------gttatgtttccccaaagac--tgtaggttttagaattaccagcta-cagaacaccgacttcagatactagaatt---------gtgagaaaatagttacatgtgaaatctaatat----------aaagaaaaaaagatggaa-tcataaaattg
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       316171 196 -   1024465 --caaat--tat-agcattcaagtag--tcaaccca-gcatatttgacaattgtcagaaacaataaataata--------gttatgtttccccaaagac--tgcaggttttagaattatcagcta-cagaacacagacttcagatactagaatt---------gtgagaaaatagttacatgtgaagtctaatat----------aaagaaaaaaagatggag-tgataaaattg
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       761801 195 -   3745603 --caaat--cat-agcattcaagtag--tcaaccca-gcatatttgagaattgtcagaaacaataaataata--------gttatgttt-cccaaagac--tgtaggttttagaattatcagata-cagaacatagacttcagatactaggctt---------gtgagaaaatagttacatgtgaaatctaatat----------aaagaaaaaaaaatggaa-tcataaaattg
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6785072 207 -  36342412 --caaatactat-agcattcaagaag--gcaatcca-acagataggagaattggtagaaataataactattaattatggggacatgtatcctcaaagactgtgtacatttgggaattatcagatg-tagaacaGTGACATTGGATAGTAGAATT---------GTGAGAAAATAGTTTTATGTGAAATCTAATATT---------A---AAAAAAGGACGGAATTCATAAAAATG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  55199754 188 + 124595110 --AAGAT--CAC-AAC-------TAG--GCCACCCAGGCAC-----AGAAATGACAGAAAT-ATGAATGTTAT--------ATACATGTCCCCAAGGAC-----TGGTTCTTGAAATATCAGATCTCAAGATAGGGGTAAGGGATAgctgaggttgtagctgagtggtaaagtgcctacttagcatgtgttcaat----------c---cccagcgcctcaaa-GCACAAAGCAG
i mm10.chr9                 I 2 C 0
s dasNov3.JH569975              75331 195 -   2180720 catagat--cacaagcatgtaactag--gcaactca-acagaaaagagaattggcagaaacaatggatataa---------atatatattcccagagac--tgtaggttttggaattattggaca-cagcatagagacttcagatattatgact---------gtgagaaaataggtatatg--aaatttaatgt----------aaa-taaaaaagatggaa-tcataaagttg
i dasNov3.JH569975          C 0 C 0
e canFam3.chr30                 77036 281 -  40214260 I
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5364341 150 -   6271500 M

a score=520818.000000
s hg38.chr15_KI270850v1_alt    210662 86 +    430880 -agcaa-cagaaaggccaccaggaatgaggaggaggacctgaaaag----aaaatggatgaactagaacttacag----------aaataaaatatatagct
s panTro5.chr15              18020358 86 -  83230942 -agcaa-cagaaaggccaccaggaatgatgaggaggacctgaaaag----aaaatggatgaactagaacttacag----------aaataaaatatatagct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17246622 86 -  99763055 -agcaa-cagaaaggccaccaggaatgatgaggaggacctgaaaag----aaaatggatgaactagaacttacag----------aaataaaatatatagct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       309268 83 +    378907 -agcaa-cagaaaggccaccaggaatgat---gaggacctgaaaag----aaaatggatgaactagaacttacag----------aaataaaatatacagct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102164833 87 + 121039945 -agcaagcagtaagaccaccaggaatgatgaggaggacctgaaaag----aaaatggatgaaatagaacttacag----------aaataaaatatatagct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60376142 87 + 169600520 -agcaagcagtaagaccaccaaaaacgatgaggggtacctgaaaag----aaaatggatgaaatagaacttacag----------aaataaaatatatagct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107367795 97 - 171882078 -agcaaccagtaagaccaccaggaatgatgaggaggacctgaaaag----aaaatggatgaaatagaacttacagaaataaaataaaataaaatatatagct
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1826093 87 -   1987038 -agcaagcagtaagaccaccaaaaacgatgaggggtacctgaaaag----aaaatggatgaaatagaacttacag----------aaataaaatatatagct
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7504445 87 -   9444221 -agtgagcagtaagaccaccgggaatgatgaggaagacctgaaagg----aaaatggatgaaatagaacttacag----------aaataaaatatatagct
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18034253 85 + 132174527 -agcaagcagcaagcccatcaggaatgataaggaagacctgaaaag----aaaatggatgaaatatagcttacag----------aaataaactat--agct
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             532416 85 -   3282555 -agcaagcagtaagcccatcaggaatgatgaggaagacctgaaaag----aaaatggatgaaatataacttacag----------aaataaactat--agct
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       316367 85 -   1024465 -agcaagcagtaagcccatcagaagtgatgaggaagacctgaaaag----aaaatggatgaaatataacttacag----------aaataaactat--agct
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       761996 85 -   3745603 -agcaagcagtaagcccatcaggaacgatgaggaagacctgaaaag----aaaatgaatgaaatataacttacag----------aaataaactat--agct
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  55199942 72 + 124595110 -AACAA--AATAAAAACTGCAGTTAT-------------TGAAATGCAATAAAATAGTTATATGAAATGTCAGAG----------GAAGAAAAT----agct
i mm10.chr9                 C 0 C 0
s dasNov3.JH569975              75526 78 -   2180720 aaataagcaataagaccatcaggattgatgaggcagatctggaaaa----aaa--------aatagaactt--ag----------aattgaaaaataaaatt
i dasNov3.JH569975          C 0 C 0
e canFam3.chr30                 77036 281 -  40214260 I
e otoGar3.GL873530            6785279  0 -  36342412 C
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5364341 150 -   6271500 M

a score=701995.000000
s hg38.chr15_KI270850v1_alt    210748 163 +    430880 gggtctggtggctcacacctgtaat--cccagcactgtttgggaggccgaggtgggaggatggtatgagcccaggagttggggagacaagcctgggcaacatggtg------agaactcgtttctgt-aaaaaatacccc-aacacc--a----cc-aaaaaaaaaaaaaaa---aaaaaaag
s panTro5.chr15              18020444 164 -  83230942 gggtctggtggctcacacctgtaat--cccagcactgtttgggaggccgaggtgggaggatggtatgagcccaggagttggggagacaagcctgggcaacatggtg------agaactcgtttctgt-aaaaaatacccc-aacacc--a----ccaaaaaaaaaaaaaaaa---aaaaaaag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17246708 162 -  99763055 gggtctggtggctcacacctgtaat--cccagcactgtttgggaggccgaggtgggaggatggtatgagcccaggagttggggagacaagcctgggcaacatggtg------agaactcgtttctgt-aaaaaatacccc-aacacc--a----cc-aaaaaaaaaaaaaaa---aaaagta-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       309351 164 +    378907 gggtctggtggctcacacctgtaat--cccagcactgtttgggaggccgaggtgggaggatggtatgagcccaggagttggggagacaagcctgggcaacatggtg------agaactcatttctgt-aaaaaatacccc-aacacc--a----ccaaaaaaaaaaaaaaaa---aaaaaaag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102164920 159 + 121039945 ggatctggtggttcacacctgtaatcccccagcactctttgggaggctgaggtgggaggatggtatgagcccaggagttggggagacaagcctgggcaacatggtg------agaactcgtttctct-aaaaaataccctaaacacc--a----cc-aaaaaaaaaaaaaaa---a-------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60376229 158 + 169600520 ggatatggtgactcatacctgtaat--cccagcactctttgtgaggctgaggtgggaggacggtattagcccaggagtt--ggagatgagcctgggaaacatggtg------agaacccatttctacaaaaaaatacccc-accacc--a----cc-aaaaaaaaaaaaaaa---aaaa----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107367892 138 - 171882078 gagta-----------acctgtaat--cccagcactctttgggaggctgaggtgggaggatggtatgagcccaggagtt--ggagacaagcctgggcaacatggtg------agaactcatttctat-aaaaaatacccc-accacc--a----cc-aaaaaaaaaaa---------------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1826180 153 -   1987038 gggtatggtgactcatacctgtaat--cccaacactctttgtgaggctgaggtgggaggacggtattagcccaggagtt--ggagatgagcctgggaaacatggtg------agaacccatttctacaaaaaaatacccc-accacc--a----cc-aaaaaaaaaaaaaa------------
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7504532 155 -   9444221 gggtatgatggctcacacctgtaat--cccagaactttttgggaggctgaggtgggaagatggcatgagcccaggagtt--ggagatgagcctgggaaacatagtg------agaactcgtttctac-aaaaaatacccc-accacc--a----cc-acacacacacacaca---aa------
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18034338 143 + 132174527 gggtatggtagctcatgcctgtaat--cccagcac--tttgggaggccaaggcaggaggatggcttgagcccaggagtt--caagaccagcatgtgcaacatggtg------agaacttgtctctac-aaaaaatacccc----ctccaa----cc-aaaaaaat------------------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             532501 141 -   3282555 gggtatggtggctcatgcctgtaat--cccagcac--tttgggaggccgaggcaggaggatggcttgagcccaggagtt--caagaccagcctgtacaacatggtg------agaacttgtctctac-aaaaaataccac----ccc--a----cc-aaaaaaat------------------
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       316452 142 -   1024465 gggtatggtggcttatgcctgtaat--cccagcact-tttgggaggccgaggcaggaggatggcttgagctcaggagtt--ccagaccagcctgtgcaacatgatg------agaacttgtctctac-aaaaaataccgc----ccc--a----cc-aaaaaaat------------------
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       762081 141 -   3745603 gggtatggtggctcatgcctgtaat--ctcagcac--tgtgggaggccaaggcaggaggatggcttgagcccaggcgtt--caagaccagcctttgcaacatggtg------agaacttgtctctac-aaagaatacccc----ccg--a----cc-aaaaaaat------------------
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  55200014 159 + 124595110 aagtaaatggtcatatg-ttataac--ccctgcact-tagagaagatggagacagtaggat----------cagaagtt--caaggtaatgtttggctacatagtgggttcaaggccacagtggcct-aaacgagattct-atctca--aaaagcc-aaagaaaAGAAAACATTTAAAAA---
i mm10.chr9                 C 0 C 0
e dasNov3.JH569975              75604   0 -   2180720 C
e canFam3.chr30                 77036 281 -  40214260 I
e otoGar3.GL873530            6785279   0 -  36342412 C
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e macNem1.NW_012011056v1      5364341 150 -   6271500 M

a score=672959.000000
s hg38.chr15_KI270850v1_alt    210911 106 +    430880 ----------tagctgggtatgg-ggcacgtgtctgtagtcccagctagtcaggaggctgaggagggaggatcacttgagctcaggaggcaagggctgcat--------gtgcatgccactgcag
s panTro5.chr15              18020608 106 -  83230942 ----------tagctgggtatgg-ggcacgtgtctatagtcctagctagtcaggtggctgaggagggaggatcacttgagctcaggaggcaagggctgcac--------atgcatgccactgcag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17246870 105 -  99763055 -----------agctgggtatgg-ggcacgtgtctatagtcctagctagtcaggtggctgaggagggagaatcacttgagctcaggaggcaagggctgcac--------gtgcatgccactgcag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       309515 106 +    378907 ----------tagctgggtatgg-ggcacgtgtctatagtcctagctagtcaggaggctgaggagggaggatcacttgagctcaggaggcaagggctgcac--------gtgcatgccactgcag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102165079 106 + 121039945 ----------tagctgggtatgg-ggcacgtgtctatagtcctagctagtcaggaggctgaggagggaggatcacttgagctcaggaggcaaggtctgcac--------gtgcatgccgctgcag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60376387 106 + 169600520 ----------tagctgggtatgg-ggcacatgcctatagtcccagctagccaggaggctgaggtgggaggatagaccaagcccagaaagccaaggctgcaa--------gtttgtgccactgcag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107368030 105 - 171882078 -----------agctggatatgg-ggcatgtgcctatagttctagctagtcaggaggctgaggtgggaggatcacttgagcgcaggaggccaaggctacag--------gtacatgccactgcag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5364493 106 -   6271500 ----------tagctgggtgtgg-agcatgtgcctatagtcctagctagtcaggaggctgaggtgggaggatcgcttgagcttatgaggccaaggctccag--------gtgcatgccactgcag
i macNem1.NW_012011056v1    M 150 C 0
s cerAty1.NW_012002657v1      1826333 105 -   1987038 -----------agctgggtatgg-ggcacatgcctgtagtcccagctagccaggaggctgaggtgggaggatagaccaagcccaggaagccaaggctgcaa--------gtttgtgccactgcag
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012112253v1      7504687 105 -   9444221 -----------agctgggtattg-agcacctgcctatagtcccagctactcaggaggctgaggtgggaggatcacttgaggccaggaggccgaggctgcag--------gttcgtgcccctgcag
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18034481 114 + 132174527 ----------tagctgggtgtgg-ggtatatgcctatagttccagctactcaggaggctgagttgggaggatcacttgagcccaggaggccaaggctgcagtgaggcatgtttgtaccactgcac
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             532642 114 -   3282555 ----------tagctggatatgg-ggtatatacctatagttccagctactcaggaggctgagttgggaggatcacttaagcccaggaggccaaggctgcactgaggcatgtttgtactactgcac
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       316594 114 -   1024465 ----------tagctgggtatgg-ggtatatgcctatagttccagctactcatgaggctgagttgggaggatcacttgagcccaggaggtcaaggctgcactgaggcatgttcataccactgcac
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       762222 114 -   3745603 ----------tagctgggtatgg-ggtatatgcctatagttccagctactcaggaggctgagttgggaggatcacttgagcccaggaggccaaggctgcactgaggcatgttcgtaccactgcac
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  55200173 107 + 124595110 TGGAACCATGAagccaggcgtagtggtgcacgcctttaatcccagc-acttgggaggcagaggcaggcagatttc-tgagttc--gaggcca-gcctg-----------gtt--tacagttccag
i mm10.chr9                 C 0 C 0
e dasNov3.JH569975              75604   0 -   2180720 C
e canFam3.chr30                 77036 281 -  40214260 I
e otoGar3.GL873530            6785279   0 -  36342412 C
e manLeu1.NW_012105520v1       320702 978 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=514160.000000
s hg38.chr15_KI270850v1_alt    211017 69 +    430880 tccagcctgggtgacagagtgagactccgtctc---------agaataaaatgaaataaagaaata--aaaaatgtaatt
s panTro5.chr15              18020714 69 -  83230942 tccagcctgggtgacagagtgagactccgtctc---------agaataaaatgaaataaagaaata--aaaaatgtaatt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17246975 69 -  99763055 tccagcctgggtgacagagtgagactccgtctc---------agaataaaatgaaataaagaaata--aaaaatgtaatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       309621 69 +    378907 tccagcctgggtgacagagtgagactccgtctc---------agaataaaatgaaataaagaaata--aaaaatgtaatt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102165185 69 + 121039945 tccagcctgggtgacagagtgagactccgtctc---------agaataaaatgaaataaagaaata--aaaaatgtaatt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60376493 69 + 169600520 tccagcctgggtgacagagtgagactctgtttc---------agaatacaatgaaatgaagaaata--aaaaatgtgatt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107368135 69 - 171882078 tccagcctgggtgacagactgagactccatctc---------agaatgaaatgacataaagaaata--aaaaatgtaatt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5364599 69 -   6271500 tccagcctgggtgacagagtaagactctgtctc---------aaaataaaatgaaataaagaaata--gaaaaTGCaatt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1826438 69 -   1987038 tccagcctgggtgacagagtgagactctgtttc---------agaatacaatgaaatgaagaaata--aaaaatgtgatt
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       321684 69 -   1458659 tccagcctgggtgacagactgagactccatctc---------agaaTGAAATGACATAAAGAAATA--AAAAATGTAATT
i manLeu1.NW_012105520v1    M 978 C 0
s colAng1.NW_012112253v1      7504792 69 -   9444221 tccagcctgggtgacggagtgagactctatctc---------agaatagaatgaaataaggaaata--aaaaatgtaatt
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18034595 57 + 132174527 tccagcctgagtgacag--tgagactctgtctc---------a----------aaataaaaaaaga--aaaaatgtaacc
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             532756 57 -   3282555 tccagcctgggtgacag--tgagactctgtctc---------a----------aaataaagaaaga--aaaaatgtaact
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       316708 57 -   1024465 tccagcctgggtgacag--tgagactctgtctc---------a----------aaataaagaaaga--aaaaatgtaact
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       762336 57 -   3745603 tccagcctgggtaacag--taagactctgtctc---------a----------aaataaagaagga--aaaaatgtaacc
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  55200280 80 + 124595110 gacagccagggctacacagagaaaccctgtcttgaaaaaccaaaaAAAAAGTGGAACCATGAAAGACTGGAAATGAAGTT
i mm10.chr9                 C 0 C 0
e dasNov3.JH569975              75604  0 -   2180720 C
e canFam3.chr30                 77036 281 -  40214260 I
e otoGar3.GL873530            6785279  0 -  36342412 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=315387.000000
s hg38.chr15_KI270850v1_alt    211086 44 +    430880 gttgaaataaaaaactcagt---ggatggattagacatcagaagaaa
s panTro5.chr15              18020783 44 -  83230942 gttgaaataaaaaactcagt---ggatggattagacatcagaagaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17247044 44 -  99763055 gttgaaataaaaaactcagt---ggatggattagacatcagaagaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       309690 44 +    378907 gttgaaataaaaaactcagt---ggatggattagacatcagaagaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102165254 44 + 121039945 gttgaaataaaaaactcagt---ggatggattagacatcagaagaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60376562 44 + 169600520 gttgaaataagacactcagt---ggatggattagacatcagaagaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107368204 41 - 171882078 gttgaaat---aaactcagt---ggatggattagacatcagaagaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5364668 44 -   6271500 gttgaaataagaaactcaga---ggatggattagacatcagaagaaa
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1826507 44 -   1987038 gttgaaataagacactcagt---ggatggattagacatcagaagaaa
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       321753 41 -   1458659 GTTGAAAT---AAACTCAGT---GGATGGATTAGACATCAGAAGAAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7504861 44 -   9444221 gttgaaataagagactcagt---ggatggattagacaccagaagaaa
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18034652 36 + 132174527 actgaaataagaaactcagt---ag------tagacaccagaag--a
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             532813 38 -   3282555 gctgaaataagaaactcagt---ag----attagacactagaag--a
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       316765 38 -   1024465 gctgaaataagaaactcagt---ag----attagacactagaag--a
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       762393 38 -   3745603 actgaaataagaaactcagt---ag----attagacaccagaag--a
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  55200360 47 + 124595110 GAGAGATCTGAAGAATCCATACAGAATAGCTTAAAACTGGGGAGAAA
i mm10.chr9                 C 0 N 0
s dasNov3.JH569975              75604 43 -   2180720 gctgaaataagaaactcaat---ggatagagtatatatcattagaa-
i dasNov3.JH569975          C 0 C 0
e canFam3.chr30                 77036 281 -  40214260 I
e otoGar3.GL873530            6785279  0 -  36342412 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=2453852.000000
s hg38.chr15_KI270850v1_alt    211130 297 +    430880 gaattaattggttagacaatta-tctcccaa-aagtgagtcagtatgttacacagagagacatgaggatagatgatagggcagaagttggtggggttgtagggg----gagggagatcagaatgaggtctaaaatatgtcttagtggaatcccaggaggagaTATTAAAATTATATTAGAAAGTGAGAGAAATAGAAGTTCTAaaggcaatagaaggaagtccacataaatcagtcacaacaaatgtaaatggactaaagttaccagtt----------aggtggaactaataaaagaatatccagctgttt--t
s panTro5.chr15              18020827 297 -  83230942 gaattaattggttagacaatta-tctcccaa-aagtgagtcagtgtgttacacagagagacatgaggatagatgatagggcagaagttggtggggttgtagggg----gagggagatcagaatgaggtctaaaatatgtcttagtggaatcccaggaggagaTATTAAAATTATGTTAGAAAGTGAGAGAAATAGAAGTTCTAAAGGCgatagaaggaagtccacataaatcagtcacaacaaatgtaaatggactaaagttaccagtt----------aggtggaactaataaaagaatatccagctgttt--t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17247088 297 -  99763055 gaattaattggttagacaatta-tctcccaa-aagtgagtcagtgtgttacacagagagacatgaggatagatgatagggcagaagttggtggggttgtagggg----gagggagatcagaatgaggtctaaaatatgtcttagtggaatcccaggaggagaTATTAAAATTATATTAGAAAGTGAGAGAAATAGAAGTTCTAAAGGCgatagaaggaagtccacataaatcagtcacaacaaatgtaaatggactaaagttaccagtt----------aggtggaactaataaaagaatatccagctgttt--t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       309734 297 +    378907 gaattaattggttagacaatta-tctcccaa-aagtgagtcagtatgttacacagagagacatgaggatagatgatagggcagaagtcggtggggttgtagggg----gagggagatcagaatgaggtctaaaatatgtcttagtggaatcccaggaggagaTATTAAAATTATATTAGAAAGTGAGAGAAATAGAAGTTCTAAAGGtgatagaaggaagtccacataaatcagtcacaacaaatgtaaatggactaaagttaccagtt----------aggtggaactaataaaagaatatccagctgttt--t
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102165298 298 + 121039945 gaattaattggttagacaattattctcccaa-aagtaagtcagtatgttacat----agacatgaggatagatgatagggcagaagttggtggggttgtggggg----gagggagatcagaatgaggtctaaaatatgtcttagtggaatcccaggaggaTATATTAAAATTATATTAGAAAGTGAGAGAAATAGAAGTTCTAaaggtgataggaggaaatccacataaatcagtcacaacaaatgtaaatggactaaagttaccagttaga------gagatggaactaataaaagaatatccagctgttt--t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60376606 300 + 169600520 gaattaattggttagacaatta-tctcccaa-aagtaagtcagtatgttacacagagaggcatgaggatagatgatagggcagaagttggt-gggttgagaggg----gagggaaatcagaatgaggtctagaatatgtcttagtggaatctcaggaggagaTACTAAAATTATATTGGAAAGTGAGAGAAATGGAAGTTCTAaaggtgatagaaggaagtccacatcaatcagtcacaacaaatgtaaatggactaaagttaccagttaga------cagatggaactaataaaacaatatccaaccgttt--t
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107368245 301 - 171882078 gaattaattggttagacaatta-cctcccaa-aagtaagtcagtatgttacacagagagacatgaggatagataacagggcagaagttggtggggttgtgcagg----gagggagatcagaatgaggtctaaaatatgtcttagtggaatcccaggaggagaTATTAAAATTATATTAGAAAGTGAGAGAAATAGAAGTTCTAaaggtgatagaaggaagtccacatcaatcagtcacaacaaatgtaaatggactaaatttaccagttaga------cagatggaactaataaaacactatccagctgttt--t
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5364712 299 -   6271500 gaatcaattggatagacaatta-tctcccaa-aagtaagtcagtatgttgcacagagagacatgaggatagatgatagggcagaagttggtggggttgtgggag----gaggaagtccagaatgaggtctaaaatatgtcttagtggaatcctaggaggagaTATTAAAATTATATTAGAAAGTGAGAGAAATAGAAGTTCTAaagatgagagaaggaagtccacataaatcagtcacaacaaatgtaaatggccaaaagttactagttagc------cagatggaaccaaaaagaaa--atccagctgttt--t
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1826551 296 -   1987038 gaattaattggttagacaatta-tctcccaa-----aagtcagtatgttacacagagcggcatgaggatagatgatagggcagaagttggt-gggttgagaggg----gagggaaatcagaatgaggtctagaatatgtcttagtggaatcccaggaggagatactaaaATTATATTGGAAAGtgagagaaatagaagttctaaaggtgatagaaggaagtccacatcaatcagtcactacaaatgtaaatggactaaagttaccagttaga------cagatggaactaataaaacaatatccaactgttt--t
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       321794 301 -   1458659 GAATTAATTGGTTAGACAATTA-CCTCCCAA-AAGTAAGTCAGTATGTTACACAGAGAGACATGAGGATAGATGACAGGGCAGAAGTTGGTGGGGTTGTGCAGG----GAGGGAGATCAGAATGAGGTTTAAAATGTGTCTTAGTGGAATCCCAGGAGGAGATATTAAAATTATATTAGAAAGTGAGAGAAATAGAAGTTCTAaaggtgatagaaggaagtccacatcaatcagtcacaacaaatgtaaatggactaaagttacctgttaga------cagatggaactaataaaacattatccagctgttt--t
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7504905 303 -   9444221 aaattaattggttagatgatta-tctccaaa-aagtaagtcagtatgttacacagagagacatgggaataaatgatagggcagaagatagtgggattggggagggggagagggagatcagaatgaggtctaaaatatgtcttagatgaattctaggaggagatactaaaATTATATTAGAAAGTGAGAGaaatagaagttccaaag--gatagaaggaagtccacgtaagtcagtcacaacaaatgcaaatggactaaagttaccagttaga------cagatggaactaataaaacaatatccagctgttt--t
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18034688 298 + 132174527 gaattaattgattagatgatta-tctcccaacaaataagttagtatgttacatagagagacatgggaatagatgatagggcagaaattgctcaggtgggtaggg----gag--agatcagaatgaggtccaaaatatgtcttaggggaatcccaggagcagaTATTAGAATTATACTAGGAAGTGAGAGAAATAGAAGTTTTAAAGGTGATTTAAGCAAGTCTACATAAATCAGTCACAACAAATGTAAATGGACTAAAGGTACCAGTT----------AGGTTGAATTTATAAAAGAAAATCCAGCTGTTTTTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             532851 295 -   3282555 gaattaacagattagatgatta-tctccaaaaaaataagttagtatgttacacagagagacatgagaataggtgatagggcagaaattgctgaggtgggtcggg----gag--agatcagaatgaggtccaaaatatgtcttaggggaatcccaggagcagatattagaattatactagaaagtgagagaagcaGACGTTTTAaaggtgatagaagcaagtgtacataaatcagtcacaacaaatgtaaatggactaaaggtaccagtt----------gggttgaattaataaaagaaaatccagctgttt---
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       316803 296 -   1024465 gaattaattgattagatgatta-tctccaaaaaaataagttagtatgttacatagagagacatgagaatagatgatagggcagaaattgctgaggtgggttggg----gag--agatcagaatgaggtccaaaatatgtcttaggggaatcccaggagcagatattagaATTATACCAGAAAGTGAGAGAAATAGACGTTTTAaagatgatagaagcaagtgtgcataaatcagtcacaataaatgtaaatggactaaaggtaccagtt----------aggttgaattaataaaagaaaatccagctGTTT--T
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       762431 288 -   3745603 gaattaattgattagatgatta-tctccaaaaaaataagttagtatgttacacagagagacatgaaaatagatgatagggcagaaattgctgaggtgggtcggg----gag--agatcagaatgaggtccaaaatatgtcttaggggaatcccaggagcagatattagaATTATACTAGAAAGTGAGAGAAATAAAAGTTTTAaaggtgatagaagcaagtctacataaatcagtcacaacaaatgtaaatggacta--------agtt----------aggttgaattaacaaaagaaaatccagctGTTT--T
i aotNan1.NW_018511953v1    C 0 I 1159
s dasNov3.JH569975              75647 267 -   2180720 ---ttaattaattaga-aggta-tatccaaa-gag-aactcagTATTGTA---AGAGAATCATTAGTATAGAGTATATGGAAGAAGTTG----------TGTCA----GAGAGAGATCACAGCCAAGTCTAA--------------GAATCTCAGGAGAAGAT-----AATTATATTAAAAAGtgagagaaatagaaat---aaagatggtagaagcaagtccaaataaatcaattgcaacaaatgtaaatggactaaacttaccagttaagcattatcagattgaattaataaagcaaaatctccccattt--t
i dasNov3.JH569975          C 0 C 0
e canFam3.chr30                 77036 281 -  40214260 I
e otoGar3.GL873530            6785279   0 -  36342412 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=217.000000
s hg38.chr15_KI270850v1_alt    211427 4 +    430880 -aat-c
s panTro5.chr15              18021124 4 -  83230942 -aat-c
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17247385 4 -  99763055 -aat-c
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310031 4 +    378907 -aat-c
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102165596 4 + 121039945 -aat-c
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60376906 4 + 169600520 -aat-c
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107368546 4 - 171882078 -aat-c
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5365011 4 -   6271500 -aat-c
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1826847 4 -   1987038 -aat-c
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       322095 4 -   1458659 -aat-c
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7505208 4 -   9444221 -aat-c
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18034986 3 + 132174527 -AAT--
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276             533146 1 -   3282555 ---t--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       317099 4 -   1024465 -AATC-
i cebCap1.NW_016107979v1    C 0 I 219
s dasNov3.JH569975              75914 4 -   2180720 taat--
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       762719 1159 -   3745603 I
e canFam3.chr30                 77036 281 -  40214260 I
e otoGar3.GL873530            6785279 0 -  36342412 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=184600.000000
s hg38.chr15_KI270850v1_alt    211431 34 +    430880 catcatattt-aaaatataaggatatgagaagatt
s panTro5.chr15              18021128 34 -  83230942 catcatattt-aaaatataaggatatgagaagatt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17247389 34 -  99763055 catcatattt-aaaatataaggatatgagaagatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310035 34 +    378907 catcatattt-aaaatttaaggatatgagaagatt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102165600 34 + 121039945 catcatattt-aaaatataaggatatgagaagatt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60376910 35 + 169600520 ggtcatatttaaaaatatgaggatatgagaagatt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107368550 34 - 171882078 catcatattt-aaaatatgaggatatgagaagatt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5365015 34 -   6271500 catcatattt-aaactatgaagatatgagaagatt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1826851 34 -   1987038 ggtcatattt-aaaatatgaggatatgagaagatt
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       322099 34 -   1458659 catcatattt-aaaatatgaggatatgagaagatt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7505212 34 -   9444221 catcgtattt-aaaatatgaggatgtgaaaagatt
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18034989 29 + 132174527 CATTATATTT------TTAAAGATACAAAAAGATT
i calJac3.chr10             C 0 I 165
s saiBol1.JH378276             533147 29 -   3282555 aatcatattt------ataaagagacaAAAAGATT
i saiBol1.JH378276          C 0 C 0
s dasNov3.JH569975              75918 34 -   2180720 tatcataaat-ttgataaaaggtttgaaaaaaatt
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       762719 1159 -   3745603 I
e canFam3.chr30                 77036 281 -  40214260 I
e cebCap1.NW_016107979v1       317103 219 -   1024465 I
e otoGar3.GL873530            6785279  0 -  36342412 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=49061.000000
s hg38.chr15_KI270850v1_alt    211465 8 +    430880 gaaagttt-
s panTro5.chr15              18021162 8 -  83230942 gaaagttt-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17247423 8 -  99763055 gaaagttt-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310069 8 +    378907 gaaagttt-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102165634 8 + 121039945 gaaagttt-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60376945 8 + 169600520 gaaagttt-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107368584 8 - 171882078 gaaagatt-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5365049 8 -   6271500 gaaagttt-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1826885 8 -   1987038 gaaagttt-
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       322133 8 -   1458659 gaaagatt-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7505246 8 -   9444221 gaaagttt-
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18035183 8 + 132174527 gaaagttt-
i calJac3.chr10             I 165 C 0
s saiBol1.JH378276             533176 8 -   3282555 GAAAGTTT-
i saiBol1.JH378276          C 0 N 0
s dasNov3.JH569975              75952 4 -   2180720 -----tttt
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       762719 1159 -   3745603 I
e canFam3.chr30                 77036 281 -  40214260 I
e cebCap1.NW_016107979v1       317103 219 -   1024465 I
e otoGar3.GL873530            6785279 0 -  36342412 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=107527.000000
s hg38.chr15_KI270850v1_alt    211473 22 +    430880 ttataaaggagagaga--gtaatg
s panTro5.chr15              18021170 22 -  83230942 ttataaaggagagaga--gtaata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17247431 22 -  99763055 ttataaaggagagaga--gtaata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310077 22 +    378907 ttataaaggagagaga--gtaata
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102165642 22 + 121039945 ttataaacgagagaga--gtgata
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60376953 22 + 169600520 ttataaaggagagaga--gtgata
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107368592 22 - 171882078 ttataaaggagagaga--gtgata
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5365057 22 -   6271500 ttataaaggagagaga--gtgata
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1826893 22 -   1987038 ttataaaggagagaga--gtgata
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       322141 24 -   1458659 ttataaaggagagagagggtgata
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7505254 18 -   9444221 ttataaaggaga------gtgata
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18035191 18 + 132174527 ttataaatgaga------atgata
i calJac3.chr10             C 0 C 0
s dasNov3.JH569975              75956 22 -   2180720 aaataaatgatagaag--atgatt
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       762719 1159 -   3745603 I
e canFam3.chr30                 77036 281 -  40214260 I
e cebCap1.NW_016107979v1       317103 219 -   1024465 I
e otoGar3.GL873530            6785279  0 -  36342412 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=579087.000000
s hg38.chr15_KI270850v1_alt    211495 84 +    430880 aagatatggcagtatacattaacc-aaaaacaagtgatggagcttcagtat----caaaaaaggattttggaacagaaagcattagtaa
s panTro5.chr15              18021192 84 -  83230942 aagatatggcagtatacattaacc-aaaaacaagtgatggagcttcagtat----caaaaaaggattttggaacagaaagcattagtaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17247453 84 -  99763055 aagatatggcagtatacattaacc-aaaaacaagtgatggagcttcagtat----caaaaaaggattttggaacagaaagcattagtaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310099 84 +    378907 aagatatggcagtatacattaacc-aaaaacaagtgatggagcttcagtat----caaaaaaggattttggaacagaaagcattagtaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102165664 88 + 121039945 aagatatgccagtatacattaacc-aaaaacaagtgatggagcttcagtatcaaacaaaaaaggattttggaacagaaagcattagtaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60376975 88 + 169600520 aagatatgccagtatacattaacc-aaaaacaagtgatggagccttggtatcaaacaaaataggattttggaacagaaagcattagtaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107368614 88 - 171882078 aagatatgccagtatacattaatc-aaaaacaagtgatggagcttcagtatcaaacaaaaaaggattttagaacagaaagtgttagtaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5365079 88 -   6271500 aagatatgccagtgtacattaacc-aaaagcaagtgatggagcttcagtatcaaacaaaaagggattttggaacagaaagcattagtaa
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1826915 88 -   1987038 aagatatgccagtatacattaacc-aaaaacaagtgatggagctttggtatcaaacaaaataggattttggaacagaaagcattagtaa
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       322165 88 -   1458659 aagatatgccagtatacattaatc-aaaaacaagtgatggagcttcagtatcaaacaaaaagggattttagaacagaaagtgttagtaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7505272 88 -   9444221 aagatatgccagtatatattaacc-aaaaacaaatgatggaggttcagtatccaacaaaataggattttggtacagaaaccattagtaa
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18035209 89 + 132174527 aagatatgccagtatacattagccaaaaaacaagtgatggagttttagtatcaaacgaaataggattttggaacagaaagcattagtaa
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       317322 89 -   1024465 aagatatgccagtatacattagccaaaaaacaagtgatggagttttagtatcaaacgaaataggattttggaacagaaagcattagtaa
i cebCap1.NW_016107979v1    I 219 I 15
s dasNov3.JH569975              75978 82 -   2180720 aaga-aagctgacattccctaact-aaaaagaggtgatgtaattgcagtat-----taaataagattttggaatagaaagcattaataa
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       762719 1159 -   3745603 I
e canFam3.chr30                 77036 281 -  40214260 I
e otoGar3.GL873530            6785279  0 -  36342412 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=37267.000000
s hg38.chr15_KI270850v1_alt    211579 15 +    430880 gaaacttgatgc----tga
s panTro5.chr15              18021276 15 -  83230942 gaaacttgatgc----tga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17247537 15 -  99763055 gaaacttgatgc----tga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310183 15 +    378907 gaaacttgatgc----tga
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102165752 18 + 121039945 g-aacttgatgctaagtga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60377063 18 + 169600520 g-aacttgatgctaaatga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107368702 18 - 171882078 g-gacttgatgctaaatga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5365167 18 -   6271500 g-aacttgatgctaaatga
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1827003 18 -   1987038 g-aacttgatgctaaatga
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       322253 18 -   1458659 g-gacttgatgctaaaaga
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7505360 18 -   9444221 g-aatttgatgctaaatga
i colAng1.NW_012112253v1    C 0 C 0
s calJac3.chr10              18035298 11 + 132174527 ----cttgaggataa----
i calJac3.chr10             C 0 I 4
s dasNov3.JH569975              76060 14 -   2180720 -ctacttaatgataa----
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       762719 1159 -   3745603 I
e canFam3.chr30                 77036 281 -  40214260 I
e cebCap1.NW_016107979v1       317411 15 -   1024465 I
e otoGar3.GL873530            6785279  0 -  36342412 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=75721.000000
s hg38.chr15_KI270850v1_alt    211594 11 +    430880 ctgttaattag
s panTro5.chr15              18021291 11 -  83230942 ctgttaattag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17247552 11 -  99763055 ctgttaattag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310198 11 +    378907 ctgttaattag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102165770 11 + 121039945 ctgttaattag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60377081 11 + 169600520 ctgttaattag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107368720 11 - 171882078 ctgttaattag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5365185 11 -   6271500 ctgttaattag
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1827021 11 -   1987038 ctgttaattag
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       322271 11 -   1458659 ctgttaattag
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012112253v1      7505378 11 -   9444221 ttgttaattag
i colAng1.NW_012112253v1    C 0 n 0
s calJac3.chr10              18035313 11 + 132174527 ctgttaattaa
i calJac3.chr10             I 4 C 0
s cebCap1.NW_016107979v1       317426 11 -   1024465 ctgttaattaa
i cebCap1.NW_016107979v1    I 15 C 0
e aotNan1.NW_018511953v1       762719 1159 -   3745603 I
e dasNov3.JH569975              76074  0 -   2180720 C
e canFam3.chr30                 77036 281 -  40214260 I
e otoGar3.GL873530            6785279  0 -  36342412 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=372758.000000
s hg38.chr15_KI270850v1_alt    211605 61 +    430880 gaggatgtagcaattttcatattttatgtacctgtcaaaatagcctcaaaatgcaggagaa
s panTro5.chr15              18021302 61 -  83230942 gaggatgtagcaattttcatattttatgtacctgtcaaaatagcctcaaaatgcaggagaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17247563 61 -  99763055 gaggatgtagcaattttcatattttatgtacctgtcaaaatagcctcaaaatgcaggagaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310209 61 +    378907 gaggatgtagcaattttcatattttatgtacctgtcaaaatagcctcaaaatgcaggagaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102165781 61 + 121039945 gaggatgtagcaattttcatattttatgtacctgtcaaaatagcctcaaaatacagaagaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60377092 61 + 169600520 gaggacgtggcaagtttcatattttatgtacctgtcaaagtagcctcaaaatacagaggaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107368731 61 - 171882078 gaggatgtagcaattttcatattttatgtacctgtcaaaatagcctcaaaatacagaagaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5365196 61 -   6271500 gaggatgtagcaattttcatattttaggtacctgtaaaaataacctcaaaatacagaagaa
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1827032 61 -   1987038 gaggacgtggcaagtttcatattttatgtacctgtcaaagtagcctcaaaatacagaggaa
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       322282 61 -   1458659 gaggatgtagcaattttcatattttatgtacctgtcaaaatagcctcaaaatacagaagaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1          186 61 -   1784207 gaggatgtagcaattttcatattttaggtacctgtaaaaatagcctcaaaatacagaagaa
i colAng1.NW_012117110v1    n 0 C 0
s calJac3.chr10              18035324 57 + 132174527 gagaatgtaacaattttcatattttatgta----tcaaaatagcctcaaaatacagaggaa
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       317437 57 -   1024465 gaggatgtaacaattttcatattttatgta----tcaaagtagcctcaaaatacagaggaa
i cebCap1.NW_016107979v1    C 0 C 0
s dasNov3.JH569975              76074 23 -   2180720 -------------------------aagtatcagtcaatgtag------------gagga-
i dasNov3.JH569975          C 0 I 136
e aotNan1.NW_018511953v1       762719 1159 -   3745603 I
e canFam3.chr30                 77036 281 -  40214260 I
e otoGar3.GL873530            6785279  0 -  36342412 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=1578948.000000
s hg38.chr15_KI270850v1_alt    211666 270 +    430880 aaactgataaaaccacagggagaaattgacaagtctgccagcatatttggagatttcaccataccctgcttaccataagtaagttacacagaatgcccatatgtagatttgaataaccagtgaatggacatggtgtaatggacaaatataggcctttgtacccaataattaga-tattctatattcttctcaagcatatgtggactgtgggagaaacattaattatatattaattcgtaaagcaagtcagaagatttaaaaacaattggta
s panTro5.chr15              18021363 270 -  83230942 aaactgataaaaccacagggagaaattgacaagtctgccagcatatttggagatttcaccataccctgcttaccataagtaagttacacagaatgcccatatgtagatttgaataaccagtgaatggacatggtgtaatggacaaatatagacctttgtacccaataattaga-tattctatattcttctcaagcatatgtggactgtgggagaaacattaattatatattaattcataaagcaagtcagaagatttaaaaacaattggta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17247624 270 -  99763055 aaactgataaaaccacagggagaaattgacaagtctgccagcatatttggagatttcaccataccctgcttaccataagtaagttacacagaatgcccatatgtagatttgaataaccagtgaatggacatggtgtaatggacaaatatagacctttgtacccaataattaga-tattctatattcttctcaagcatatgtggactgtgggagaaacattaattatatattaattcataaagcaagtcagaagatttaaaaacaattggta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310270 270 +    378907 aaactgataaaaccacagggaaaaattgacaagtctgccagcatatttggagatttcaccataccctgcttaccataagtaagttacacggaatgcccatgtgtagatttgaataaccagtgaatggacatggtgtaatggacaaatatagacctttgtacccaataattaga-tattctatattcttctcaagcatatgtggactgtgggagaaacattaattatatattaattcataaagcaagtcagaagatttaaaaacaattggta
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102165842 267 + 121039945 aaactgataaaaccacagggagaaattgacaagtctgccgtcgtatttggagatttcaccataccctgcttactgtaagtaagttacacagaatgcccacatgtagatttgaataaccagtgaatggacgtggtgtaatggacaaatatagacctttgtacccaataattaga-tattctatattctt---aagcgtatgtggactgtgggagaaacatgaattatatattaattcataaagcaagtcagaagatttaaaaacaattggta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60377153 271 + 169600520 aaactgataaaaccagagggagaaattgacaagtctgccatcgtatttggagatttcagcataccctgcttaccataagtaagttacacagaatgcctatatgtagatttgaataaccagtgaaaggatgtggtataatggacaaatactgacctctgtacacaataattagatttttctatattcttctcaagcacatgtggactatgggagaaagattaattatatattaatccataaagcaagtcagaagatttaaaaacaattggta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107368792 266 - 171882078 aaactgataaaaccacagggagaaactgacaagtctgccattgtatttggagatttcaccataccctgcttaccataagtaagttacacagaatgcccacatgtagatttgaataaccactgaataaacatggtgtaatgggcaaatatagacctttgtacccaataattaga-tgttctatattattatcaagcatatgtggactgtgggagaaatattaattgtat----atttataaagcaaatcagaagatttaaaaactattggta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5365257 270 -   6271500 aaactgaataaaccacagggagaaactgacaagtctgccatcatatttggagacctcagcataccctgcttaccataagtaagttacacagaatgcccatatgtagatttgaataaccagtgaaagaacatggtataacagacaaatatagacctttgtacccaataattaga-tactctattttcttctcaagcatatgtggactgtgggagaaacattaattatatattaattcataaagcaagtcagaagatttaacaacaattggta
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1827093 271 -   1987038 aaactgataaaaccagagggagaaattgacaagtctgccatcgtatttggagatttcagcataccctgcttaccataagtaagttacacagaatgcctatatgtagatttgaatagccagtgaacggatgtggtataatggacaaatactgacctctgtacacaataattagatttttctatattcttctcaagcacatgtggactatgggagaaagattaattacatattaatccataaagcaagtcagaagatttaaaaacaattggta
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       322343 266 -   1458659 aaactgataaaaccacagggagaaactgacaagtctgccattgtatttggaggtttcaccataccctgcttaccataagtaagttacacagaatgcccacatgtagatttgaataaccactgaataaacatggtgtaatgggcaaatatagacctttgtacccaataattaga-tggtctatattattatcaagcatatgtggactgtgggagaaatattaattatat----atttataaagcaagtcagaagatttaaaaactattggta
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1          247 257 -   1784207 aaactgataaaaccacagggagaaattgacaagtctgccatcgtatttggagatttcagcatatgttgcttaccat-------------ggaatgcccatatgtggatttgaataaccagtgaacagacatggtgtaatggacaaatatagacctttgtacccaataattagg-tattctacattcttctgaagcacatgtggactgtaggagaaacattaattatatattaattcataaagcaagtcagaagatttaaaaaccattggta
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10              18035381 263 + 132174527 aaacagataaaaccacagggagaagttgacaagtccaccatcatagttggaaatttcagtgtactctgtttaccattagtaagataaacagaatgcccatatgtagatttgaataaccagtgaacaggaatggtattatggacaaatacagacctctgtacccaataattaga-ta---tagatccttttcaagtgtgtatagactatggaagaaaaatttattata----aatctacaaggcaattcagaatatttaaaaacaattggta
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       317494 263 -   1024465 aaatggataaaaccacagggagaagttgacaagtccaccatcatagttggagatttcagtgtaccctgtttactattagtaagataaacagaatgcccatatgtagatttgaataaccagtgaacaggcatggtatcatggacaaacacagacctctgtaccaaataattaga-ta---tagatccttttcaagtgtgtatggactatggaagaaaagtttattata----aatctacaaggcaagtcagaagatttaaaaacaattggta
i cebCap1.NW_016107979v1    C 0 C 0
e aotNan1.NW_018511953v1       762719 1159 -   3745603 I
e dasNov3.JH569975              76097 136 -   2180720 I
e canFam3.chr30                 77036 281 -  40214260 I
e otoGar3.GL873530            6785279   0 -  36342412 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=632169.000000
s hg38.chr15_KI270850v1_alt    211936  93 +    430880 ccatcca------caccatataatttataatttaaatatga------agcaattaaggttagaaggcaataatgaagagattaacaaaaagctacatgaatttgg
s panTro5.chr15              18021633  93 -  83230942 ccatcca------caccatataatttataatttaaatatga------agcaattaaggttagaaggcaataatgaagagattaacaaaaagctacatgaatttgg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17247894  93 -  99763055 ccatcca------caccatataatttataatttaaatatga------agcaattaaggttagaaggcaataatgaagagattaacaaaaagctacatgaatttgg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310540  93 +    378907 ccatcca------caccatataatttataatttaaatatga------agcaattaaggttagaaggcaataatgaagagattaacaaaaagctacatgaatttgg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102166109  93 + 121039945 ccatcca------caccatataatttataatttaaatatga------agcaattaaagttagaaggcaataatgaagagattaacaaaaagctacatgaatttgg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60377424  93 + 169600520 cgattca------cgccatgcaatttataatttaaatataa------agcaattaagattagaaggcaataatgaagagattaacaacaagctccattaatttgg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107369058  93 - 171882078 ccatcca------caccatataatttataatttaaatatga------agcaattaatgttagaaggcaataataaagagattaacaaaaagctacatgaatttgg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5365527  93 -   6271500 ccaccca------caccatataatttataatttaaatttga------agcagttaaggttagaaggcaataatgaagagattaacaaaaagctatgtgaatttgg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1827364  93 -   1987038 cgattca------cgccatgtaatttataatttaaatataa------agcaattaagattagaaggcaataatgaagagattaacaacaagctccattagtttgg
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       322609  93 -   1458659 ccatcca------caccatataatttataatttaaatatga------agcaattaatgttagaaggcaataataaagagattaacaaaaagctacatgaatttgg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1          504  86 -   1784207 ccatcca------tacca-------tataatttaaatatga------agcaattaaggttagaaggcagtaatgaagagattaacaaaaagctacatgaatttgg
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10              18035644  93 + 132174527 ccatcca------caccatataatttataatttaaatatga------agcagttaatgttagaaggcagtaatgaagagattaacaaaaatctatagacatttgg
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       317757  93 -   1024465 ccatcca------caccatataatttataatttaaatatga------agcagttaatgttagaaggcagtaatgaagaaattaacaaaaatctatagaaatttgg
i cebCap1.NW_016107979v1    C 0 C 0
s canFam3.chr30                 77317 104 -  40214260 ccatccaggGATCCCCCATA-AATTAATACTTAAAAAACAAGCccatagcagttaaggttagaagtcagtaatgaaaagattaatgaaaatccatatgaatttgt
i canFam3.chr30             I 281 C 0
e aotNan1.NW_018511953v1       762719 1159 -   3745603 I
e dasNov3.JH569975              76097 136 -   2180720 I
e otoGar3.GL873530            6785279   0 -  36342412 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=109465.000000
s hg38.chr15_KI270850v1_alt    212029 15 +    430880 aaattaaacaccctt
s panTro5.chr15              18021726 15 -  83230942 aaattaaacaccctt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17247987 15 -  99763055 aaattaaacaccctt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310633 15 +    378907 aaattaaacaccctt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102166202 15 + 121039945 aaattaaacaccctt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60377517 15 + 169600520 aaagtaaccaccctc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107369151 15 - 171882078 aaattaaacaccctt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5365620 15 -   6271500 aaatcaaacaccctt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1827457 15 -   1987038 aaagtaaccaccctc
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       322702 15 -   1458659 aaattaaacaccctt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1          590 15 -   1784207 aaattaaacaccctt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10              18035737 15 + 132174527 aagttaaacattctg
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       317850 15 -   1024465 aaattaaacaCCCTG
i cebCap1.NW_016107979v1    C 0 C 0
s canFam3.chr30                 77421 15 -  40214260 aaattaaacaccatt
i canFam3.chr30             C 0 I 124
s dasNov3.JH569975              76233 15 -   2180720 aaattaaacagacat
i dasNov3.JH569975          I 136 C 0
e aotNan1.NW_018511953v1       762719 1159 -   3745603 I
e otoGar3.GL873530            6785279  0 -  36342412 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=87249.000000
s hg38.chr15_KI270850v1_alt    212044 18 +    430880 gtaattcatgg-tataaaa
s panTro5.chr15              18021741 18 -  83230942 gtaattcatgg-tttaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17248002 18 -  99763055 gtaattcatgg-tttaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310648 18 +    378907 gtaattcatgg-tttaaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102166217 18 + 121039945 gtaattcatgg-ttgaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60377532 19 + 169600520 gtaatgcatggttttaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107369166 18 - 171882078 gtaattcatgg-tttgaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5365635 18 -   6271500 gttattcgtgg-tttaaga
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1827472 19 -   1987038 gtaatgcatggttttaaaa
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       322717 18 -   1458659 gtaattcatgg-tttaaaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1          605 18 -   1784207 gtaattcatgg-tttaaaa
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10              18035752 19 + 132174527 gtaaatcatgaatttaaaa
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       317865 19 -   1024465 GTAAATCATGGTTTTAAAA
i cebCap1.NW_016107979v1    C 0 C 0
s canFam3.chr30                 77560 18 -  40214260 ataaatcatgg-ttaaaga
i canFam3.chr30             I 124 C 0
s dasNov3.JH569975              76248  2 -   2180720 gc-----------------
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       762719 1159 -   3745603 I
e otoGar3.GL873530            6785279  0 -  36342412 C
e chlSab2.chr29              21074217 218 -  24206276 I

a score=171582.000000
s hg38.chr15_KI270850v1_alt    212062 30 +    430880 aactcaataca-attttag-aatgcttagaat
s panTro5.chr15              18021759 30 -  83230942 aactcaataca-attttag-aatgcttagaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17248020 30 -  99763055 aactcaataca-attttag-aatgcttagaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310666 30 +    378907 aactcaataca-attttag-aatgcttagaat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102166235 30 + 121039945 aactgcatgca-attttag-aatgcttagaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60377551 30 + 169600520 aagccaatgaa-attttag-aatgcttagaat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107369184 30 - 171882078 aactcaatgca-gttttag-aatgcttagaat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5365653 30 -   6271500 aactcaatgca-atttcag-aatgcttagaat
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1827491 30 -   1987038 aatccaatgaa-attttag-aatgcttagaat
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       322735 30 -   1458659 aactcagtgca-gttttag-aatgcttagaat
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1          623 30 -   1784207 aactcaatgca-attttag-aatgcttagaat
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10              18035771 27 + 132174527 agtaaaatgaa-attttag-aatgctcta---
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       317884 27 -   1024465 AGTAAAATGAA-ATTTAAG-AATGCTCTA---
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530            6785279 31 -  36342412 AATCAAATGAA-AATTTAGAAATACTTGGAAT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 77578 30 -  40214260 -atcttatgaatatttaaa-aatacttagaac
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              76250 25 -   2180720 ----caataaa-aatggag-aa-gatttgaat
i dasNov3.JH569975          C 0 C 0
e aotNan1.NW_018511953v1       762719 1159 -   3745603 I
e chlSab2.chr29              21074217 218 -  24206276 I

a score=1028744.000000
s hg38.chr15_KI270850v1_alt    212092 127 +    430880 tgaaccatagttaaaatatgaAACTtct--ctctgttc----ctgtctctctccct-----------------------ctccctctctct-------------------tccTATCTGGAACATTCAAGAAGCTAATCTTTTTCAATGAAGAACACCCCAAATACTGAAAAGTA
s panTro5.chr15              18021789 127 -  83230942 tgaaccatagttaaaatatgaAACTtct--ctctattc----ctctctctctccct-----------------------ctccctctctct-------------------tcctatctGGAACATTCAAGAAGCTAATCTTTTTCAATGAAGAACACCCCAAATACTGAAAAGTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17248050 127 -  99763055 tgaaccatagttaaaatatgaAACTtct--ctctattc----ctctctctctccct-----------------------ctccctctctct-------------------tcctatctGGAACATTCAAGAAGCTAATCTTTTTCAATGAAGAACACCCCAAATACTGAAAAGTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310696 127 +    378907 tgaaccataattaaaatacgaAACTTCT--CTCTATTC----CTCTCTCTCTCCCT-----------------------CTCCCTCTCTCT-------------------TCCTATCTGGAACATTCAAGAAGCTAATCTTTTTCAATGAAGAACACCCCAAATACTGAAAAGTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102166265 127 + 121039945 tgaaccataattaaaatatgaAACTtct--atctattc----ctctctctctccct-----------------------ctccctccctcc-------------------tcctgtctGGAACATTCAAGAAGCTAATCTTTTTCAATGAAGAACACCCCAAATACTGAAAAGTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60377581 127 + 169600520 tgaaccatagttaaaatacaaaacatcT--GTCTATTc----ctgtctctcgccct-----------------------ctccctccctct-------------------tcctctcTGGAGCATTCAAGAAGCTAATCTTTTTCAGTGAAGGACACCCCAAATACTGAAAAATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107369214 123 - 171882078 tgaaccatagttaaaatacgaAACTTCT--ATCTATTC--------CTCTCTCTCT-----------------------CTCCCTCCCACT-------------------TCCTTTCTGGAACATTCAAGAAGCTAATCTTTTTCAATGAAGAACACCCCAAATACTGAAAAGTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5365683 125 -   6271500 taaaccatagttaaaatacaaAACTtct--atctattc------gtctctctccct-----------------------ctccctctgtct-------------------tcctatctGGAACATTCAAGAAGCTACTCTTTTTCAATGAAGATCACCCCAAATACTGAAAGGTA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1827521 127 -   1987038 tgaaccatagttaaaatacaaAACTTCT--GTCTATTc----ctgtctctcgccct-----------------------ctccctccctct-------------------tcctatcTGGAGCATTCAAGAAGCTAATCTTTTTCAGTGAAGAACACCCCAAATACTGAAAAATA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       322765 123 -   1458659 tgaaccatagttaaaatacgaAACTTCT--ATCTATTC--------CTCTCTCTCT-----------------------CTCCCTCCCACT-------------------TCCTTTCTGGAACATTCAAGAAGCTAATCTTTTTCAATGAAGAACACCCCAAATACTGAAAAGTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1          653 127 -   1784207 tgaaccatagttaaaataggaAACTtct--atctattc----ctgtctctctccct-----------------------ctccctccctct-------------------tcctatctGGAACATTCAAGAAGCTAATCTTTTTCAATGAAGAACACCCCAAATGCTGAAAAGCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10              18035798 127 + 132174527 tgaaccataattaaaatacTAAAATTTT--GTCTGTTC----CTCTCTCCCCTCCT-----------------------CTCCTTCCCTCT-------------------TACTATCTGGAACATTCAAGAAGCTGATCTTTTTCAATGAACAACACCTCAAATACTGAAAAGTA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       317911 126 -   1024465 TGAACCATAATTAACATACTAAAATTCT--GTCTGTTC----CTCTCTCCCCTCCT-----------------------CTCCTTCCCTGT-------------------CACTATCTGGAACATTCAAGAAGCTGATC-TTTTCAGTGGACAACACCTCAAATACTGAAAAGTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1       763878 127 -   3745603 TGAACCATAATTAAAATACTAAAATTCT--GTCTGTTC----CTCTGTCCCCTCCT-----------------------CTCCTTCCCTCT-------------------TACTATCTGGAACATTCAAGAAGCTGATCTTTTTCAGTGAACACCACCTCAAATACTGAAAAGTA
i aotNan1.NW_018511953v1    I 1159 C 0
s otoGar3.GL873530            6785310 150 -  36342412 TGAACCATAATTAAAATACTAAAATTCT--GTCAGTTCTTCACTATCTCTCTCCTT-----------------------TTCCCTCCGTCTTAAATATTCTCACTCTCACTATTATCTGAAACAATCATGAAGCTAATTCTGTTCAGTGAAGAAAACCTCAAATTCTGGAAAGTA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 77608 152 -  40214260 tgaaccataatagaaatacTAAAGTtctccctctgtcc----ctctttccttctctatccctttatctatccttcctccctctctctctct-------------------ctctctttcAAACATTCATGAAACTAATCCTGTTCAGTGAAGAAAACTTCAAATTTTCGAAGTGG
i canFam3.chr30             C 0 C 0
s dasNov3.JH569975              76275  87 -   2180720 --------------------------------------------------------aacCAATGAG-------------CAGGCTTTATAT-------------------GTGTATGCGATACATTTGTGAAACTAATCCTGTTCATTGAAGAAAATCTCAGATTTTGAAAAGTA
i dasNov3.JH569975          C 0 N 0
e chlSab2.chr29              21074217 218 -  24206276 I

a score=9869.000000
s hg38.chr15_KI270850v1_alt    212219 5 +    430880 GGAA-A
s panTro5.chr15              18021916 5 -  83230942 GCAA-A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17248177 5 -  99763055 GCAA-A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310823 5 +    378907 GGAA-A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102166392 5 + 121039945 GAAA-A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60377708 5 + 169600520 GAAA-A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107369337 5 - 171882078 GAAA-A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5365808 5 -   6271500 GAAA-A
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1827648 5 -   1987038 GAAA-A
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       322888 5 -   1458659 GAAA-A
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1          780 5 -   1784207 GAAA-A
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10              18035925 4 + 132174527 GAAA--
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       318037 5 -   1024465 GAAAA-
i cebCap1.NW_016107979v1    C 0 N 0
s aotNan1.NW_018511953v1       764005 4 -   3745603 GAAA--
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6785460 4 -  36342412 GGAA--
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30                 77760 4 -  40214260 GAAA--
i canFam3.chr30             C 0 C 0
e chlSab2.chr29              21074217 218 -  24206276 I

a score=84123.000000
s hg38.chr15_KI270850v1_alt    212224 10 +    430880 AAGACAGATG
s panTro5.chr15              18021921 10 -  83230942 AAGACAGATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17248182 10 -  99763055 AAGACAGATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310828 10 +    378907 AAGACAGATG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102166397 10 + 121039945 AGGACAGATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60377713 10 + 169600520 AGAACAGATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107369342 10 - 171882078 AGTACAGATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5365813 10 -   6271500 AGGACAGATG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1827653 10 -   1987038 AGAACAGATG
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       322893 10 -   1458659 AGTACAGATG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1          785 10 -   1784207 AGGacagatg
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10              18035929 10 + 132174527 AGGACAGATG
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018511953v1       764009 10 -   3745603 AGGACAGATG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6785464 10 -  36342412 AGGACAGATG
i otoGar3.GL873530          C 0 T 68799
s canFam3.chr30                 77764 10 -  40214260 AGGATAGATG
i canFam3.chr30             C 0 C 0
e chlSab2.chr29              21074217 218 -  24206276 I

a score=15103.000000
s hg38.chr15_KI270850v1_alt    212234 3 +    430880 GCA
s panTro5.chr15              18021931 3 -  83230942 GCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17248192 3 -  99763055 GCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310838 3 +    378907 GCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102166407 3 + 121039945 GCA
i nomLeu3.chr6              C 0 I 4008
s rheMac8.chr7               60377723 3 + 169600520 TCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              107369352 3 - 171882078 GCA
i macFas5.chr7              C 0 n 0
s macNem1.NW_012011056v1      5365823 3 -   6271500 TCA
i macNem1.NW_012011056v1    C 0 I 5799
s cerAty1.NW_012002657v1      1827663 3 -   1987038 TCA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       322903 3 -   1458659 GCA
i manLeu1.NW_012105520v1    C 0 I 6080
s colAng1.NW_012117110v1          795 3 -   1784207 aca
i colAng1.NW_012117110v1    C 0 I 6235
s calJac3.chr10              18035939 3 + 132174527 TCA
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018511953v1       764019 3 -   3745603 TCA
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr30                 77774 3 -  40214260 TCA
i canFam3.chr30             C 0 C 0
e otoGar3.GL873530            6785474 68799 -  36342412 T
e chlSab2.chr29              21074217 218 -  24206276 I

a score=14976.000000
s hg38.chr15_KI270850v1_alt    212237 2 +    430880 TT
s panTro5.chr15              18021934 2 -  83230942 TT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17248195 2 -  99763055 TT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310841 2 +    378907 TT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               17168082 2 - 121039945 TT
i nomLeu3.chr6              n 4008 C 0
s rheMac8.chr7               60377726 2 + 169600520 TT
i rheMac8.chr7              C 0 I 4434
s macFas5.chr7              108378690 2 - 171882078 TT
i macFas5.chr7              n 0 C 0
s macNem1.NW_012011056v1      5371625 2 -   6271500 TT
i macNem1.NW_012011056v1    I 5799 C 0
s cerAty1.NW_012002657v1      1827666 2 -   1987038 TT
i cerAty1.NW_012002657v1    C 0 I 4428
s manLeu1.NW_012105520v1       328986 2 -   1458659 TT
i manLeu1.NW_012105520v1    I 6080 C 0
s colAng1.NW_012117110v1         7033 2 -   1784207 TT
i colAng1.NW_012117110v1    I 6235 C 0
s calJac3.chr10              18035942 2 + 132174527 tt
i calJac3.chr10             C 0 I 83844
s aotNan1.NW_018511953v1       764022 2 -   3745603 TT
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr30                 77777 2 -  40214260 TC
i canFam3.chr30             C 0 C 0
e otoGar3.GL873530            6785474 68799 -  36342412 T
e chlSab2.chr29              21074217 218 -  24206276 I

a score=1846.000000
s hg38.chr15_KI270850v1_alt    212239 1 +    430880 T
s panTro5.chr15              18021936 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17248197 1 -  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310843 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               17168084 1 - 121039945 G
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108378692 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5371627 1 -   6271500 T
i macNem1.NW_012011056v1    C 0 C 0
s manLeu1.NW_012105520v1       328988 1 -   1458659 T
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1         7035 1 -   1784207 T
i colAng1.NW_012117110v1    C 0 C 0
s aotNan1.NW_018511953v1       764024 1 -   3745603 T
i aotNan1.NW_018511953v1    C 0 N 0
s canFam3.chr30                 77779 1 -  40214260 C
i canFam3.chr30             C 0 C 0
e calJac3.chr10              18035944 83844 + 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1827668 4428 -   1987038 I
e rheMac8.chr7               60377728 4434 + 169600520 I

a score=20403.000000
s hg38.chr15_KI270850v1_alt    212240 6 +    430880 CATGGT
s panTro5.chr15              18021937 6 -  83230942 CATGGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17248198 6 -  99763055 CATGGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310844 6 +    378907 CATAGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               17168085 6 - 121039945 CATGGT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108378693 6 - 171882078 CATGGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5371628 6 -   6271500 CATGGT
i macNem1.NW_012011056v1    C 0 C 0
s manLeu1.NW_012105520v1       328989 6 -   1458659 CATGGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1         7036 6 -   1784207 CATGGT
i colAng1.NW_012117110v1    C 0 C 0
s canFam3.chr30                 77780 6 -  40214260 TCTGAT
i canFam3.chr30             C 0 N 0
e calJac3.chr10              18035944 83844 + 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1827668 4428 -   1987038 I
e rheMac8.chr7               60377728 4434 + 169600520 I

a score=1439438.000000
s hg38.chr15_KI270850v1_alt    212246 476 +    430880 AATCCCTTCCCCCAAGAGTGTAGAATGTTTCTTTAGCTTCTTTGATAGTTTGTTTACTtatttattaagtacttactataaaccagactctgctttaatttgtgatgaacaacctagagattaagtcctgccctatggattttatattagagtgagaaaaacagatagctaagtctggagctcaggggtgaggcccaggttggaattatagattCACTTGACCAAGGTGAAACCTGGTGTGCCCCCTCCTACTTCACATCCCCAGACATACTTCTGGAACATTTCTGTTCTATTCTTGTGTATAAACTCTTCCTTTTGAGCCTCTCTCCATTAATGCATGTCAACCTCTACTTGTCTTTTGTTGATTTTGAGGCCACTTGCCCATATAACTTGGAGGATATTGAAGAAGAATCATACC-GAcctggttctgctacctaccagctgagttactttggtcaagctcttggacttctgag
s panTro5.chr15              18021943 476 -  83230942 AATCCCTTCCCCCAAGAGTGTAGAATGTTTCTTTAGCTTCTTTGATAGTTTGTTTACTtatttattaagtacttactataaaccagactctgctttaatttgtgatgaacaacctagagattaagtcctgccctatggattttatattagagtgagaaaaacagatagctaagtctggagctcaggggtgaggcccaggttggaattatagattCACTTGACCAAGGTGAAACCTGGTGTGCCCCCTCCTACTTCACATCCCCAGACATACTTCTAGAACATTTCTGTTCTGTTCTTGTGTATAAACTCTTCCTTTTGAGCCTCTCTCCATTGATGCATGTCAACCTCTACTTGTCTTTTGTTGATTTTGAGGCCACTTGCCCATATAACTTGGAGGATATTGAAGAAGAATCATACC-GAcctggttctgctacctaacagctgagttactttggtcaagctcttggacttctgag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17248204 476 -  99763055 AATCCCTTCCCCCAAGAGTGTAGAATGTTTCTTTAGCTTCTTTGATAGTTTGTTTACTtatttattaagtacttactataaaccagactctgctttaatttgtgatgaacaacctagagattaagtcctgccctatggattttatattagagtgagaaaaacagatagctaagtctggagctcaggggtgaggcccaggttggaattatagattCACTTGACCAAGGTGAAACCTGGTGTGCCCCCTCCTACTTCACATCCCCAGACATACTTCTAGAACATTTCTGTTCTGTTCTTGTGTATAAACTCTTCCTTTTGAGCCTCTCTCCATTGATGCATGTCAACCTCTACTTGTCTTTTGTTGATTTTGAGGCCACTTGCCCATATAACTTGGAGGATATTGAAGAAGAATCATACC-GAcctggttctgctacctaacagctgagttactttggtcaagctcttggacttctgag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       310850 476 +    378907 AATCCCTTCCCCCAAGAGTGTAGAATGTTTCTTTAGCTTCTTCGATAGTTTGTTTACTtatttattaagtacttactataaaccagactctgctttaatttgtgatgaacaacctagagattaagtcctgccctatggattttatattagagtgagaaaaacagatagctaagtctggagctcaggggtgaggcccaggttggaattatagattCACTTGACCAAGGTGAAACCTGGTGTGCCCCCTCCTACTTCACATCCCCAGACATACTTCTAGAACATTTCTGTTCTATTCTTGTGTATAAACTCTTCCTTTTGAGCCTCTCTCCATTGATGCATGTCAACCTCTACTTGTCTTTTGTTGATTTT-AGGCCACTTGCCCATATAACTTGGAGGATATTGAAGAAGAATCATACCGGAcctggttctgctacctaacagctgagttactttggtcaagctcttggacttctgag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               17168091 476 - 121039945 AATCCCTTCCCCCAAGAGTGTGGAAAGTTTCTTTAGCTTCCTTGATAGTTTGTTTATTtatttattaagtacttactataaagcagactctgcattaatttgtggtgaacaagctagagattaagtcctgccctgtgaattttatattagagtgagaaaaacagatagctaagtctggagctcaggggtgaggcccaggttggaattacagattCACTTGACCAAGGTGAAACCTGGTGTGCTGCCTCCTACTTCACATCCCCAGACATACTTGCAGAACATTTCTGTTCTATTCTTGTGTATCAACTCTTCCTTTTGAGCCTCTCTCCATTGATGCATGTCAACCTCTACTTGTCTTTTGTTGATTTTGAGGCCACTTGCCCATGTAACTGGCAGGACATTGAAGAAGAATCATACT-GAcctggttcttctacctaacagctgagttactttggtcaagctcttggacttctgag
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108378699 472 - 171882078 AATCCCTTCCCACAAGAGTGTGGAATGTTTCTTTAGCTTCTTTGATA----GTTTATTtatttattaagtacttactatataccagactctgctttactttgtggtgaacaagctagagattaagtcctgccctgtgtattttatattagagtaagaaagacagatggctaagtctggagctcaggggtgaggctcaggttggaattacagattCACTTGACCGAGGTGAAACCTGGTGTGCCCCCTCCTACTTCACATCCACAGACATACTTCCAGAACATTTCTGTTCTCTTGTTGTGTATAAAGTCATCCTTTTGAGCCTCTCTCCATTGATGCATGTCAACCTCTACTTGTCTTTTGTTGATTTTGAGGCCACTTACCTATGTAACTGACAGGATATTGAAGAAGAATCATACC-AAcctggttctgctacctaacagctgagttacattggtcaagctcttggacttctgag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5371634 472 -   6271500 AATCCCTTCCCCCAAGAGTGTGGAATGTTTCTTTAGCTTCTTTGATA----GTTCATGtatttattaagtacttactataaaccagactgtgctttaatttgtggtgaacaacctagagattaagttctgccctgtggattttatattagagtaagaaaaacagataactaagactggagctcaggggtgaggcccaggttggaattatagattCACTTGACCAAGGTGAAACCTGGTGTGCCTCCTCCTACTTCACATCCCCAGAGATACTTCTCAAACATTTCTGTTCTATTCTTGTGTATAAACTCTTCCTTTACAGCCTCTCTCCATTGAAGCATGTCAATCTATACTTGTCCTTTGTTGATTTTGAGGCCACTTGACCAGGTAACTGGCAGGATATTGAAGAAGAATCATACC-GAcctggttctgctacctaacagctgagttactttggtcaagctcttggacttctagg
i macNem1.NW_012011056v1    C 0 C 0
s manLeu1.NW_012105520v1       328995 472 -   1458659 AATCCCTTCCCGCAAGAGTGTGGAATGTTTCTTTAGCTTCTTTGATA----GTTTATTtatttattaagtatttactatataccagactctgctttactttgtggtgaacaagctagagattaagtcctgccctgtgtattttatattagagtaagaaagacagatagctaagtctggagctcaggggtgaggctcaggttggaattacagattCACTTGACCGAGGTGAAACCTGGTGTGCCCCCTCCTACTTCACATCCACAGACATACTTCCAGAAAATTTCTGTTCTGTTGTTGTGTATAAAGTCATCCTTTTGAGCCTCTCTCCATTGATGCATGTCAACCTCTACTTGTCTTTTGTTGATTTTGAGGCCACTTACCTATGTAACTGACAGGATATTGAAGAAGAATCATACC-AAcctggttctgctacctaacagctgagttacattggtcaagctcttggacttctgag
i manLeu1.NW_012105520v1    C 0 M 1766
s colAng1.NW_012117110v1         7042 472 -   1784207 AATCCCTTCCCGCAAGAATGTGGAATGTTTCTTTAGCTTCTTTGATA----GTTTATTtatttattaagtgcttgctataaaccagactctgctttaatttgtggtgaacaagctagagattaagtcctgccctgtgtattttatattagaataagaaagacagatggctaagtctggagcttcggggcgaggcccaggttggaattataaattCACTTGACCAAGTTGAAACCTGGTGTGTCCCCTCCTACTTCACATCCCCAGACATACTTCCAGAATATTTCTGTTCTATTCTTGTGTATAAACTCTTCTTTTTGAGCCTCTCTCAATTGATGCATGTCAACCTCTACTTGTCTTTTGTTGATTTTGAGGCCACTTGCCCATGTAACTGACAGGATATTGAAGAAGAATCATACC-TAcctggttttgctacctaccagctgagttactttggtgaagttcttggacttctgag
i colAng1.NW_012117110v1    C 0 C 0
e calJac3.chr10              18035944 83844 + 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1827668 4428 -   1987038 I
e rheMac8.chr7               60377728 4434 + 169600520 I

a score=138064.000000
s hg38.chr15_KI270850v1_alt    212722 62 +    430880 gctgtttcctaatttcaaaagtgggtataTGATGTGTTAGGCCCTGGTGGGTTGCAAGGAAG
s panTro5.chr15              18022419 62 -  83230942 gctgtttcctaatttcaaaagtgggtataTGATGTGTTAGGCCCTGGTGGGTTGCAAGGAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17248680 62 -  99763055 gctgtttcctaatttcaaaagtgggtataTGATGTGTTAGGCCCTGGTGGGTTGCAAGGAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       311326 62 +    378907 gctgtttcctaatttcaaaagtgggtataTGATGTGTTAGGCCCTGGTGCGTTGCAAGGAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               17168567 61 - 121039945 cctgtttcctaaattcagaagtggggatatgatgtgtta-gccctggtgggttgccaggaag
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108379171 62 - 171882078 cctgtttcctaatttcaaaagtagtgatatgatatgttaggtcctggtgggttgcaaggaag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5372106 62 -   6271500 cctgtttcctaatttcaacagtggtgataTGATGTGTTAGGCCCTGGTGGGTTGCAAGGAAG
i macNem1.NW_012011056v1    C 0 C 0
s colAng1.NW_012117110v1         7514 61 -   1784207 cctgtttcct-atttcaaaagtggtgataTGATGTGTTAGGCCCTGGTGGGTTGCAAGGAAG
i colAng1.NW_012117110v1    C 0 C 0
e calJac3.chr10              18035944 83844 + 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e manLeu1.NW_012105520v1       329467 1766 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1827668 4428 -   1987038 I
e rheMac8.chr7               60377728 4434 + 169600520 I

a score=48796.000000
s hg38.chr15_KI270850v1_alt    212784 27 +    430880 AGGTACACACATACCACCTTTGATGAT
s panTro5.chr15              18022481 27 -  83230942 AGGTACACACATATCACCTTTGATGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17248742 27 -  99763055 AGGTACACACATATCACCTTTGATGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       311388 27 +    378907 AGGTACACACATATCACCTTTGATGAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               17168628 27 - 121039945 aGGTACACACATATCACCTTTGAGGAT
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      5372168 27 -   6271500 AGGCACACACATATCACCTTTGATGAT
i macNem1.NW_012011056v1    C 0 C 0
s colAng1.NW_012117110v1         7575 27 -   1784207 AGGCACACATGTATCACCTTTGATGAT
i colAng1.NW_012117110v1    C 0 I 321
e calJac3.chr10              18035944 83844 + 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e manLeu1.NW_012105520v1       329467 1766 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1827668 4428 -   1987038 I
e macFas5.chr7              108379233  0 - 171882078 C
e rheMac8.chr7               60377728 4434 + 169600520 I

a score=235435.000000
s hg38.chr15_KI270850v1_alt    212811 129 +    430880 GAGGGCCGAATGTTAACTTGGATGGAAAGTCATCCAAACAGCGATATTGTCTCTGGCCCTAGTAATTTCAAAACCTCACAGAATATTAATTTAGCAGTATTTAGGATAGGGTTTGAGCTCTGAAGacct
s panTro5.chr15              18022508 129 -  83230942 GAGGGCCGAATGTTAACTTGGATGGAAAGTCATCCAAACAGCGATATTGTCTCTGGCCCTAGTAATTTTGAAACCTCACAGAATATTAATTTAGCAGTATTTAGGATAGGGTTTGAGCTCTGAAGacct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17248769 129 -  99763055 GAGGGCCGAATGTTAACTTGGATGGAAAGTCATCCAAACAGCGATATTGTCTCTGGCCCTAGTAATTTCAAAACCTCACAGAATATTAATTTAGCAGTATTTAGGATAGGGTTTGAGCTCTGAAGacct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       311415 129 +    378907 GAGGGCCGAATGTTAACTTGGATGGAAAGTCATCCAAACAGCGATATTGTCTCTGGCCCTAGTAATTTCAAAACCTCACAGAATATTAATTTAGCAGTATTTAGGATAGGGTTTGAGCTCTGAAGacct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               17168655 129 - 121039945 GAGGGCCGAATGTTAACTTGGATGGAAAGTCATCCAAACAGCCATATCGTCTCTGGCCCTAGGACTTTCAAAACCTCACAGAATATTAATTTAGCAGTATTTAGGAGAGGGTTTGAGCTCTGAAGACct
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      5372195 129 -   6271500 GAGGGCCCAATGTTCACTTGGATGTAAATTCATCCTAACAGTGATATTGTCTCTGGCCCTAGTACTTTCAAAACCTCACAGAATATTAATTTAGCAGTATTTAGAATAGGGTTTGAGCTCTGAGGacct
i macNem1.NW_012011056v1    C 0 C 0
s colAng1.NW_012117110v1         7923 129 -   1784207 GAGGGCTGAATGTTAACTTGGATGGAAAGTCATCCAAACAGCCATATTGTCTCTGGCCCTAGTACTTTCAAGACCTCACAGAACATTAATTTAGCAGTATTTAGAATAGGGTTTGAGCTCTGAAGacct
i colAng1.NW_012117110v1    I 321 C 0
e calJac3.chr10              18035944 83844 + 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e manLeu1.NW_012105520v1       329467 1766 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1827668 4428 -   1987038 I
e macFas5.chr7              108379233   0 - 171882078 C
e rheMac8.chr7               60377728 4434 + 169600520 I

a score=1596155.000000
s hg38.chr15_KI270850v1_alt    212940 703 +    430880 acagtatggttatttgttcatatggctgttttccatactagaccatgaactccatgagggcagggtctacagtttcatctttgtctcctaggcactcagttcagtgcctgatacataataatagaggcacaaatgtttTAAGAGTTGAGGAATTTTCAACTCTTTCTGAAAGAATAGGAAGATATAAAGGCTTCTCAGAGACGGTATTATTTAAGCTGAttttg-------------------tttttgtttttgagatgaagtcttgctctctcgcccaagatggagtgcaatggcgtgatctcagctcactgcaacctctgcttaccaggttcaagtgattcttctgcctcagtctcctgagtagctgggattacaggcatccaccaccacacccagctattttttgtatttttagtaaagacgaggtttcaccatgttggccaggctagtctcaaactactgatctgaggtgatccgcccaccttggcctcccagagtgctgggattataggcatgagccaccatgcccggcTTatttaagctgattctttaagggtaagtagaaattttttccaggtgaataaaaccttgagctattattccaagcagagaccagtaggtgcaaagacacagggataTAGAGATGTTGAAGTTTACCAAACACTGCTAGattaaaaaaacaaaaaggaaactatcaaaatcaaaaattaaaattaaaa
s panTro5.chr15              18022637 703 -  83230942 acagtgtggttatttgttcatatggctgttttccatactagaccatgaactccatgagggcagggtctacagtttcatctttctatcctaggcactcagttcagtgcctgatacataataatagaggcacaaatgtttTAAGAGTTGAGGAATTTTCAACTCTTACTGAAAGAATAGGAAGATATAAAGGCTTCTCAGAGACGGTATTATTTAAGCTGAttttg-------------------tttttgtttttgagatgaagtctcactctgtcacccaagatggagtgcaatggcgtgatctcagctcactgcaacctctgcttgccaggttcaagtgattcttctgcctcagtctcccgagtagctgggattacaggcatccaccaccacacccagctattttttgtatttttagtaaagacgaggtttcaccatgttggccaggctagtctcaaactactgatctgaggtgatccacccaccttggcctcccaaagtgctgggattacaggcatgagccaccatgcccggcTTatttaagctgattctttaagggtaagtagaaattttttccaggtgaataaaaccttgagctattattccaagcagagaccagtaggtgcaaagacacagggataTAGAGATGTTGAAGTTTACCAAACACTGCTAGattaaaaaaacaaaaaggaaactatcaaaatcaaaaattaaaattaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17248898 702 -  99763055 acagtgtggttatttgttcatatggctgttttccatactagaccatgaactccatgagggcagggtctacagtttcatctttctatcctaggcactcagttcagtgcctgatacataataatagaggcacaaatgtttTAAGAGTTGAGGAATTTTCAACTCTTACTGAAAGAATAGGAAGATATAAAGGCTTCTCAGAGACGGTATTATTTAAGCTGAttttg--------------------ttttgtttttgagatgacgtctcactctgtcacccaagatggagtgcaatggcgtgatctcagctcactgcaacctctgcttgccaggttcaagtgattcttctgcctcagtctcccgagtagctgggattacaggcatccaccaccacacccagctattttttgtatttttagtaaagacgaggtttcaccatgttggccaggctagtctcaaactactgatctgaggtgatccacccaccttggcctcccaaagtgctgggattacaggcatgagccaccatgcccggcTTatttaagctgattctttaagggtaagtagaaattttttccaggtgaataaaaccttgagctattattccaagcagagaccagtaggtgcaaagacacagggataTAGAGATGTTGAAGTTTACCAAACACTGCTAGattaaaaaaacaaaaaggaaactatcaaaatcaaaaattaaaattaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       311544 703 +    378907 acagtgtggttatttgttcatatggctgttttccatactagaccatgaactccatgagggcagggtctacagtttcatctttctatcctaggcactcagttcagtgcctgatacataataatagaggcacaaatgtttTAAGAGTTGAGGAATTTTCAACTCTTACTGAAAGAATAGGAAGATATAAAAGCTTCTCAGAGACGGTATTATTTAAGCTGAttttg-------------------tttttgtttttgagatgaagtctcgttctgtcacccaagatggagtgcaatggcgtgatctcagctcactgcaacctctgcttgccaggttcaagtgattcttctgcctcagtctcccaagcagctgggattacaggcatccaccaccacacccagctattttttgtatttttagtaaagatgaggtttcaccatgttggccaggctagtctcaaactactgatctgaggtgatccgcccaccttggcctcccaaagtactgggattacaggcatgagccaccatgcccggcTTatttaagctgattctttacgggtaagtagaaattttttccaggtgaataaaaccttgagctattattccaagcagagaccagtaggtgcaaagacacagggataTAGAGATGTTGAAGTTTACCAAACACTGCTAGattaaaaaaacaaaaaggaaactatcaaaatcaaaaattaaaattaaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               17168784 721 - 121039945 aaggtgtggttatttgttcatatggctgttttccacactagaccatgagctccatgggggcagggcctacagtttcatctttctatcctaggcactcagttcagtgcctgatacacagtaatagaggcacaaatgtttCAAGAGTTGAGGAATTTTCAACTCTTACTGAAAGAATAGGAAGATATACaggcttctcagagaaggtattatttaagctgttttttgtttgtttgtttgtttgtttgtttgtttttgaggtgaagtctcactctgtcgcccaagatggagtgcaatggtgtgatctcagctcactgcaacctctgcttcccagattcaagcaattcttctgcctcaatctcccgagtagctgggattacaggcatccaccaccacgcccagctattttttgtatttttagtaaagacaaggtttcaccatgttggccaggctagtctcaaattactgacctgaggtgatccacccgccttggtctcccaaagtgctgggattacaggcgtgagccaccatgcccggcctatttaagctgattctttaagggtgagtagaaattttttccaggtgaataaaaccttgagatattattccaagcagagacaagtaggggcaaagacacagGAATATAGAGATGTTGAAGTTTACCAAACACTGCTAGatt-aaaaaccaaaaaggaaactatcaaaatcaaaaattaaaattaaaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108379233 697 - 171882078 atagtgtggttatttgttcatatggctattttccatattggaccatgagctctgtgagggcagggtctacagtttcatatttctatgctaggcactcagttcagtgactgatacacagtaatagaggcacaaatgtttCAAGAGTTGAGGAATTGTTAACTCTTACTGAAAGAATAGGAAGATATAaaggcttctcagagaagatattatttaag----------------------cttttttttttttttttgagatgaagtctcactctgtcacccaagatggagtgcaatggtgtgatctcagctccctgcaacctctgcttctgaggttcaagcgattcttctgcctcagtctactgagtagctgggattacaggcatcagccaccatgcccagctattttttgtatttttagtaaagacgaggtttcaccatgttggccaggctagtctcaaactattgacctca-gtgttgtgcccgccttggcctcccaaagtgctgggattacaggcatgagccaccacgcccagcctatttaaggtgattctttaagggtgagtagaaa-tttttccaggtgaataaaaccttgagatattattccaagcagagaccagtaggtgcaaagacacagggatatagaaaTGTTGAAGTTTACCAGACACTGCTAGATT-AAaaaacaaaaaggaaactttcaaaatcaaaaattaaaattaaaa
i macFas5.chr7              C 0 I 334
s macNem1.NW_012011056v1      5372324 713 -   6271500 gtagtgtggttatttgttcatatggctgttttccatgctagaccatgagttccataaacgcagggtctacatttccttctttctatcctacggactcagttcagtgactgacacatagtaatagaggcacaaatgtttCAAAAGTTGTGGAATTTTCAACTCTTACTGAAAGAATAGGAAGATATAaaggcttctcagagaaggtattatttaagttggttttt--------gttttttttgttttttttttttgagatgaagtctcgctctgtcgccaaagttggagtgcagtggtgtgatctcagctcactgcaacctctgcttcccaggtttgaacaattcttctgcctcactctactgagtagctgggattacagacatctgccaccatgaccagctatttcttgtaattttattaaagacgagatttcaccaagttggcaaagctagtctcaaactactgacctcaggtgatccaccccccttggcctcccaaagtgctgggattacaggcatgagccaccatgcctggcctaattaagctgactctttaaggatgagtagaaattttttccaggtgaataaaaccttgagatattattccaagcagagaccagtaggtgcaaagacacagggataTAGTGATGTTGAAG-TTACCAAACACTGCTAGATTAAAAAAACAAAAAGGAAACTATCAAACTCAAAAATTAGAATTAAAA
i macNem1.NW_012011056v1    C 0 C 0
s colAng1.NW_012117110v1         8052 710 -   1784207 ataatgtggtgatttgttcatatggctgttttccatactagaccatgagctccatgagggcatgatcttgagtttcatctttctatcctaggtgctcggttcagtgcctgatacatagtaatagaggcacaaatgtttCAGGAGTTGAGGAATTTTCAACTCTTATTGAAAGAATAGGAAGTTACAAATgcttctcagagaaagtattatttaagctgattttt--------g----tttgtttgtttgtttttaagatgaagtctcgctttgtcgcccaagatggagtacaatggtgtgatctcagttcactgcaacctctgtctcccaggttcaagctattctttggcctttgtctccagagtagctgggattacaggcatctgccaccatgcccagctattttttatatttttagtaaagatgaagtttcaccatgttggccaggctagtctcaaactattgacctcaggtgatgtgcccgccttggcctcccaaaatgctgggattacaggcatgagccaccacttccagcctatttaaggtgattctttaagggtgagtagaaattttttccaggtgaataaaaccttgaaatattattccaagtagagaccagtaggtgcaaagAAACAGGAATACAGAGATGTTGAAGTTTTCCCAACACTGCTAGATTAAaaaaacaaaaaggaaactatcaaaatcaaaaattaaaattaaaa
i colAng1.NW_012117110v1    C 0 C 0
e calJac3.chr10              18035944 83844 + 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e manLeu1.NW_012105520v1       329467 1766 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1827668 4428 -   1987038 I
e rheMac8.chr7               60377728 4434 + 169600520 I

a score=21140.000000
s hg38.chr15_KI270850v1_alt    213643 8 +    430880 atCACCTA
s panTro5.chr15              18023340 8 -  83230942 atCACCTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17249600 8 -  99763055 atCACCTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       312247 8 +    378907 atcaccta
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               17169505 8 - 121039945 atCACCTA
i nomLeu3.chr6              C 0 M 102
s macFas5.chr7              108380264 8 - 171882078 ATCACCTA
i macFas5.chr7              I 334 C 0
s macNem1.NW_012011056v1      5373037 8 -   6271500 ATCACCTA
i macNem1.NW_012011056v1    C 0 C 0
s colAng1.NW_012117110v1         8762 8 -   1784207 atcaccta
i colAng1.NW_012117110v1    C 0 C 0
e calJac3.chr10              18035944 83844 + 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e manLeu1.NW_012105520v1       329467 1766 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1827668 4428 -   1987038 I
e rheMac8.chr7               60377728 4434 + 169600520 I

a score=286406.000000
s hg38.chr15_KI270850v1_alt    213651 164 +    430880 TAATACAAGCTATGAATGGGCTTGGCCAGAGGTCAGATCGCAACTGAGTTAACTATGACCGTAGACACTCAGTAATCGATGGAAGTTTTAGGGAAAACACATAACATTCTCAGGTTGTTGGCAGAGTATCTGGAACAATTTACAAATACGGGCATTGAATTCTG
s panTro5.chr15              18023348 164 -  83230942 AAATACAAACTATGAATGGGCTTGGCCAGAGGTCACATCGCAACTGAGTTAACTATGACCGTAGACACTCAGTAATGGATGGAAGTTTTAGGGAAAACACATAACATTCTCAGGTTGTTGGCAGAGTATCTGGAACAATTTACAAATACGAGCATTGAATTCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17249608 164 -  99763055 AAATACAAACTATGAATGGGCTTGGCCAGAGGTCACATCGCAACTGAGTTAACTATGACCGTAGACACTCAGTAATGGATGGAAGTTTTAGGGAAAACACATAACATTCTCAGGTTGTTGGCAGAGTATCTGGAACAATTTACAAATACGAGCATTGAATTCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       312255 164 +    378907 aaatacaaactaTGAATGGGCTTGGCCAGAGGTCACGTCGCAACTGAGTTAACTATGACCGTAGACACTCAGTAATGGATGGAAGTTTTAGGGAAAACACATAACATTCTCAGGTTGTTGGCAGAGTATCTGGAACAATTTACAAATACGGGCATTGAATTCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              108380272 164 - 171882078 AAATAAAACCTATGAATGGGCTTGACCAGAGGTCACATCGCAATTGAGTTAACTATGACTGTAGACACTCAGTAATAGATGGAAATTTTAGGGAAAAAACATAACATTCTCAGGTTGTTGGCAGATTATCTGGAACAATTTACAAATATAGGCATTGAATTCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5373045 164 -   6271500 AACTAAAAACTATGAATGGGCTTGGCCAGAGGTCACATTGCAATTGAGTTAACTATGACTGTAGACACTCAGTAATGGATGGAAGTTTTAGGGAAAAAGCATAACATTCTCAGGTTGTTGGCAGAGTATCTAGAACAATTTATAAATACAGGCATTGAATTCTG
i macNem1.NW_012011056v1    C 0 C 0
s colAng1.NW_012117110v1         8770 162 -   1784207 aaataaaaaCTGTGAATGGGCTTGGTCAGAGGTCACCTCACAATTGAGTTAACTATGACAGTAGACACTCAGTAATGGATGAAAGTTTTAGGGAAAAAAC--AGCATTCTCAAGTTGTTGGCAGAGTATCTTGAACAATTTACAAACACTGGCATTGAATTCTG
i colAng1.NW_012117110v1    C 0 C 0
e calJac3.chr10              18035944 83844 + 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e manLeu1.NW_012105520v1       329467 1766 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1827668 4428 -   1987038 I
e rheMac8.chr7               60377728 4434 + 169600520 I
e nomLeu3.chr6               17169513 102 - 121039945 M

a score=215661.000000
s hg38.chr15_KI270850v1_alt    213815  96 +    430880 GGAATAATTACACTGTAGTGATATCATTTCCTTCTCTGCGTATGAAGCATGTATGTATTGCACACTGTTCAAGGTGCTGAAAATCAGACTCTTCT-----------C
s panTro5.chr15              18023512  96 -  83230942 GGAATAATTACACTGTAGTGATATCATTTCCTTCTCTGCGTATGAAGCATGTATGTATTGCACACTGTTCAAGGTGCTGAAAATCAGACTCTTCT-----------C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17249772  96 -  99763055 GGAATAATTACACTGTAGTGATATCATTTCCTTCTCTGCGTATGAAGCATGTATGTATTGCACACTGTTCAAGGTGCTGAAAATCAGACTCTTCT-----------C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       312419  96 +    378907 GGAATAATTACACTGTAGTGATATCATTTCCTTCTCTGCGTATGAAGCATGTATGTATTGCACACTGTTCAAGGTGCTGAAAATCAGACTCTTCT-----------C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               17169615 107 - 121039945 GGAATAATAACACTGTAGTGATATCATATCCTTCTCTGCGTATGAAGCATGTGTGTATTGCACACTTCTCCAGGTGCTGAAAATCACACTCTTCTGGAGGAGCTCAT
i nomLeu3.chr6              M 102 C 0
s macFas5.chr7              108380436  93 - 171882078 GGAATAATTACACTGTAGTGAT---ATTTCCTTCTCTGTGTATGAAGCATGTACGTGTTGCACACTTTTCAAGGTGCTGAAAATCAGActcttct-----------c
i macFas5.chr7              C 0 I 11
s macNem1.NW_012011056v1      5373209  96 -   6271500 GGAATGATAACATTATAGTGATATCATTTCCTTCTCTGCGTATGAAGCATATATGTATTGCACGTTTTTCAAGGTGCTGAAAATCAGACTCTTCT-----------C
i macNem1.NW_012011056v1    C 0 I 11
s colAng1.NW_012117110v1         8932  93 -   1784207 GGAATAATTACACTGTAGTGAT---ATTTTCTTCTCTGCGTATGAAGCATGTACATATTGCACACTTTTCAAGGTGCTGAAAATCAGActcttct-----------c
i colAng1.NW_012117110v1    C 0 I 11
e calJac3.chr10              18035944 83844 + 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e manLeu1.NW_012105520v1       329467 1766 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1827668 4428 -   1987038 I
e rheMac8.chr7               60377728 4434 + 169600520 I

a score=2036047.000000
s hg38.chr15_KI270850v1_alt    213911 595 +    430880 GAGCAATCAAGGGAGATGGATGGGTGAGCAACTGATTATCATGTGACAAGTGAGGTAACAGAGATATGACTAAGATGGTATCTAAACAAGAAGAAAGGAATTATTCATAATATAT----GGAGTTCTGGGGAAATATTTCTCAAATGAAGCCggccgggccggatggctcccacttgtaataccggcactttgggaggtggaagtgggaggatccaggaggatctaggagttcaagaccagcctggtcaacagagcaaagccctgcctGTTTCTATATTTG-----AAAAAAAAT-AAGTAA--------ATTTTTTTAATGAAATGATATTTGAGCACTCTGGAGCACCATACAAATATAGGACAGACTGAAGGAATGTACCTGGC-----TTGAGTTAACATTTATTGAAATTTTATATTGCAAAAATAGTACATATTCACTGTTTTGAAACTAGAAAG-------------------------------------------------------------------AATTGATAGGCAAGGAGGGCTGTCTACAAAGCACTCCATAGATCCACCATACTGAGACAATGCTTAATGCTTTGATGGATTTATTGTATACTATCTATGCATATGCATGTATTATATACATACATGTGCATGGTTAAATAGAAATATTTCTCCTTGG
s panTro5.chr15              18023608 595 -  83230942 GAGCAATCAAGGGAGATGGATGGGTGAGCAACTGATTATCATGTGACAAGTGAGGTAACAGAGATATGACTAAGATGGTATCTAAACAAGAAGAAAGGAATTATTCATAATATAT----GGAGTTCTGGGGAAATATTTCTCAAATGAAGCCggccgggccggatggctcccacttgtaataccggcactttgggaggtggaagtgggaggatccaggaggatctaggagttcaagaccagcctggtcaacagagcaaagccctgcctGTTTCTATATTTG-----AAAAAAAAT-AAGTAA--------ATTATTTTAATGAAATGATATTTGAGCACTCTGGAGCACCATACAAATATAGGACAGACTGAAGGAATGTATCTGGC-----TTGAGTTAACATTTATTGAAATTTTATATTGCAAAAATAGTACATATTCACTGTTTTGAAACTAGAAAG-------------------------------------------------------------------AATTGATAGGCAAGGAGGGCTGTCTACAAAGCACTCCATAGATCCACCATACTGAGACAATGCTTAATGCTTTGATGGATTTATTGTATACTATCtatgcatatgcatgtattatatacatacatatgcatGGTTAAATAGAAATATTTCTCCTTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17249868 595 -  99763055 GAGCAATCAAGGGAGATGGATGGGTGAGCAACTGATTATCATGTGACAAGTGAGGTAACAGAGATATGACTAAGATGGTATCTAAACAAGAAGAAAGGAATTATTCATAATATAT----GGAGTTCTGGGGAAATATTTCTCAAATGAAGCCggccgggccggatggctcccacttgtaataccggcactttgggaggtggaagtgggaggatccaggaggatctaggagttcaagaccagcctggtcaacagagcaaagccctgcctGTTTCTGTATTTG-----AAAAAAAAT-AAGTAA--------ATTATTTTAATGAAATGATATTTGAGCACTCTGGAGCACCATACAAATATAGGACAGACTGAAGGAATGTATCTGGC-----TTGAGTTAACATTTATTGAAATTTTATATTGCAAAAATAGTACATATTCACTGTTTTGAAACTAGAAAG-------------------------------------------------------------------AATTGATAGGCAAGGAGGGCTGTCTACAAAGCACTCCATAGATCCACCATACTGAGACAATGCTTAATGCTTTGATGGATTTATTGTATACTATCtatgcatatgcatgtattatatacatacatatgcatGGTTAAATAGAAATATTTCTCCTTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       312515 595 +    378907 GAGCAATCAAGGGAGATGGATGGGTGAGCAACTGATTATCATGTGACAAGTGAGGTAATAGAGATATGACTAAGATGGTATCTAAACAAGAAGAAAGGAATTATTCATAATATAT----GGAGTTCTGGGGAAATATTTCTCAAATGAAGCCggccgggccggatggctcccacttgtaataccggcactttgggaggtggaagtgggaggatcca-gaggatctaggagttcaagaccagcctggtcaacagagcaaagccctgcctGTTTCTATATTTG-----AAAAAAAATAAAATAA--------ATTTTTTAAATGAAATGATATTTGAGCACTCTGGAGCACCATACAAATATAGGACAGACTGAAGGAATGTATCTGGC-----TTGAGTTAACATTTATTGAAATTTTATATTGCAAAAATAGTACATATTCACTGTTTTGAAACTAGAAAG-------------------------------------------------------------------AATTGATAGGCAAGGAGGGCTGTCTACAAAGCACTCCATAGATCCACCATACTGAGACAATGCTTAATGCTTTGATGGATTTATTGTATACTATCTATGCATATGCATGTATTATATACATACATGTGCGTGGTTAAATAGAAATATTTCTCCTTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               17169722 595 - 121039945 GAGGAATCAAGGGAGACGGGTGGGTGAGCAACTGATTATCATGTGACAAGTGAGGTAATAGAGAGATGACTAAGATGCTATCTAAACAAGAAGGAAGGAATTATTCATAATATAT----GGAGTGCTGGGGAAAGATTTCTCAAATGAAGCCggccgggcgtgagggctcccacttgtaataccggcactttgggaggtggaggtggga-----caggaggatctaggagttcaagaccagcctggctaacagaggaagaccctgcctgtctctatatttg-----aaaaaaaaT-AGATAA--------ATTTTTTAAATGAAGTGATATTTGAGCACTCTGGAGCACCATACAAATACAGGCCAGACTGAAGGAATGTATCCAGCTTAATTTGAGTTAACAttttttgaaattttatattgcaaaaatagtacatattcactgttttgaaactagaaag-------------------------------------------------------------------aattgataggcaaggagggctttctacaaagcactccatagatccaccatactgagacaatgcttgatgctttgatggatttattgtatagtttctatgcatatgcatgtattatatacatacatgtgcatggttaaatagaaatggTTCTCCTTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60382162 580 + 169600520 GAGCAGTCAAGGGAGATGGATGGGTGAGCAAT---GTGACATGTGACAAGTGAGGTAATAGAGATATGACTAAGATGCTATCTAAACAAGAAGAAAGGAATTATTCGTAATATGTGGAGGGAGTGCTAGGGAAAGATTTCTCAAATGAAGCTggccgggcctgatggctcactcttgtaatactggcactttgggaggtggaagtgggaggacccaggaggatctagaATCT-------------GTCGAC-----------CTGCCTGTCTCTATATTTG--AAAAGAATCAAT-AAATAA--------AATGCTTAAATGAAGTGATATTTGAGCACTCTAGAGCACCATATAAATATAGGACAGACGAAAAGAATGTATCCTGCTCGATTTGAATTAACATTTTTTGAAATTTTATACTTCAAAAATAGTACATATTCACTGTTGTGAAATTAGAAAG-------------------------------------------------------------------AATTGATACACAAGGAGGGCGGTCTACAAAACACTCCATAGATCCACCATACTGAGACAATGCTTAATGCTTTGATGGATCTATTATATACTTTCTATGCATACACATGTATTATATACATACATGTACGTGGTTAAATAGAAATGTTTCTCCTTGG
i rheMac8.chr7              I 4434 I 5
s macFas5.chr7              108380540 592 - 171882078 gagcaatcaagggagatggatgggtgagcaactgattatcatgtgacaagtgaggtaacagagatatgactaagatgctatctaaacaagaagaaaggaattattcgtaatatat----ggagtgctggggaaagatttctCAAATGAAGCCAgccgagtgtgatggctcccacttgtaatactggcactttaggaggtggaagtgggaggatccaggaggatctaggaggtcaaggccagcctggtcaacagaggaagaccctgcctgtctctctacttgaaaaaaaaataaaT-TTTTAA---------------AAATGAAGTGATATTTGAGCACTCTGGAGCACCATACAAATGTCGGACAGACTGAAGGAATGTATCCGGCTTAAT-----TTAACATTTTTTGAAATTTTATATTGCAAAAATAGTACATATTCACTGTTTTGAAACTAGAAAG--------------------------------------------------------------------ATTGATAGGCAAGGAAGGCTGTCTACGAAGCACTCCATAGATCCACCATACTGAGACAATGCTTAATGCTTTGATGGATTTATTGTACGCTTTCTATGCATAAGTATGTATTATATACATACACGTGCATGGTTAAATAGAAATGTTTCTTCTTGG
i macFas5.chr7              I 11 I 5
s macNem1.NW_012011056v1      5373316 607 -   6271500 GAGCAATCAAGGGAGATGGATGGGTGAGCAACTGATTATCATGTGACAAGTGAGGTAATAGAGACATGACTAAGATGCTACCTAAACAAGAAGAAAGGAATTATTCATAATATAT----TGAATGCCGGGGAAAGATTTCTCAAATGAAGTTgactgggtatgatggctcccacttgtaatgtcgacactttgggaggtggaagtgggaggatccgggaggatctaggggttcaagacaagcctggtcaacagagcaagactctgcctgtctcta-----gataaaaaaataaaT-AAATAAAAAATAAAAAAAATTAAATGAAGTGATATTTGAGCAGTCTGGAGCACTATACAAATATAGGACAGACTGAAGGAATGTATCCAGCTTAATTTGAGTTAACATTTTTTGAAATTTTATGTTGCAAAAATAGTACATATTCAC-ATTTTGAAACTAAAAAG-------------------------------------------------------------------AATTGATAGGCAAGGAGGGCTGTCTACAAAGCACTCCATAGATCCACCATACTGAGACAATGCTTAATGCTTTGATGGATTTATTGTATACTTTCTATGTATATGCGTGTATTATACACATACATGTGCATGGTTAAATAGAAAGATTTCTCCTTGG
i macNem1.NW_012011056v1    I 11 I 5
s cerAty1.NW_012002657v1      1832096 580 -   1987038 GAGCAGTCAAGGGAGATGGATGGGTGAGCAAT---GTGACATGTGACAAGTGAGGTAATAGAGATATGACTAAGATGCTATCTAAACAAGAAGAAAGGAATTATTCGTAATATGTGGAGGGAGTGCTAGGGAAAGATTTCTCAAATGAAGCTggccgggcctgatggctcactcttgtaatactggcactttgggaggtggaagtgggaggacccaggaggatctagaatct-------------gtcgac-----------ctgcctgTCTCTATATTTG--AAAAGAATCAAT-AAATAA--------AATGCTTAAATGAAGTGATATTTGAGCACTCTAGAGCACCATATAAATATAGGACAGACCAAAAGAATGTATCCTGCTCGATTTGAATTAACATTTTTTGAAATTTTATACTTCAAAAATAGTACATATTCACTGTTGTGAAATTAGAAAG-------------------------------------------------------------------AATTGATACACAAGGAGGGCGGTCTACAAAACACTCCATAGATCCACCATACTGAGACAATGCTTAATGCTTTGATGGATCTATTATATACTTTCTATGCATACACATGTATTATATACATACATGTACGTGGTTAAATAGAAATGTTTCTCCTTGG
i cerAty1.NW_012002657v1    I 4428 I 5
s colAng1.NW_012117110v1         9036 667 -   1784207 gagcaatcgagggagacggatgggtgagcaactgattatcatgtgataagtgaggtaacagagatatgactaagatgctatctaaacaagaagaaaggaattattcgtaatatat----ggagtgctggggaaagatttctCAAATGAAGCCAgctgggcatgatgacttccacttgtaataccagcactttgggaggtggaagtgggaggatccaggaggatcttggagttcaaacccagcccggtcaacagagcaagaccctgcctgtctctctatttg----aaaaataaat-aaaTAA---------ATTTTTTAATGAAGTGATATTTGAACACTCTGGAGCACCATACAAATATTGGACAGACTGAAGAAATGTATCCGGCTTAATTTGAGTTAACATTTTTTGAAACTTTATATTGCAAAAATAGTACATATTCACTGTTTTGAAACTAGAAAGAACTGATAGGCAAGGAGGGCTGTCTATGAAGCATATAGTACATAGTCACTGTTTTGAAACTAGAAAGAATTGATAGGCAAGGAAGGCTGTCTATGAAGCACTCCATAGATCCACCATACTGAGACAATGCTTAATGCTTTGATGGATCTATTATATACTTTCTATGCATATGCATGTATTATATACATGCATGTGCATGGTTAAATAGAAATGTTTCTCCTTGG
i colAng1.NW_012117110v1    I 11 I 5
e calJac3.chr10              18035944 83844 + 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e manLeu1.NW_012105520v1       329467 1766 -   1458659 M
e chlSab2.chr29              21074217 218 -  24206276 I

a score=3710225.000000
s hg38.chr15_KI270850v1_alt    214506 846 +    430880 TGTTA-----ATCCATTTATTGTTATGCAGTAAATCCCCAAAGAGCACATTTGCTTTGCCCAAGGGAGTCTTTTGCTACATACTGC--TGTACATAATGAAAACTAAAAAATTGGCTAACTTTTCAGCCTTGTGACCTTGTGGTGATTCAAATAGAGGCTTCATCAAAGGCAGATTCAGAAATGAACTTG--GTATGTGGGTggttatgcttggcattattgtttgtaatagtatgatagggatgacttcagtgtccaccaacagggaactggttaagtaaactgtggtacatccaaacgatgaatactgtgcggttgtaaagaagaatgacaaagacctctgtactcatgtagaagaactcacatatat----tgtgtgtg-------ttttaagaggaacaaggaatggtatagtatgtatggtatgctactttttgtgttgagagagaagagtagaataagaatatacgtgtgtatttgcaaacataaattctgaaatgatatataagaaaccaattaaaagtgtttggctgtagaaggagaataagactgTGAATGGGATTTGGCCACATACTTTTATAGGTAGTTATATTTAAAAATTTTCTGAACCATGTGTTTGTACACATGACC-TTTTTAAAAATAAGTGAATGA-------AGGAATGAAGTAGGATTATGAGAAAGAGATAAGAACAAATGATCTAAGGGGCTGCCCATCTTTTTAGTACCCAGTGAATATTAATATATAACAATAGCAGCAAAAATTGGAAGAGTAGCCCCAGGAGGGTAGGGAGTCAGCCTTTCCTTTGTCTTTTCCTCAATTTCATATATTAAACAAAATAATCTGAGAACGATAAAACAATTTGAAATA
s panTro5.chr15              18024203 846 -  83230942 TGTTA-----ATCCATTTACTGTTATGCAGTAAATCCCCAAAGAGCACATTTGCTTTGCCCAAGGGAGTCTTTTGCTACATACTGC--TGTACATAATGAAAACTAAAAAATTGGCTAACTTTTCAGCCTTGTGACCTTGTGGTGATTCAAATAGAGGCTTCATCAAAGGCAGATTCAGAAATGAACTTG--GTGTGTGGGTggttatgcttggcattattgtttgtaatagtatgatagggatggcttcagtgtccaccaacagggaactggttaagtaaactgtggtacatccaaacgatgaatactgtgcggttgtaaagaagaatgacaaagacctctgtactcatgtagaagaactcacatatat----tgtgtgtg-------ttttaagaggaacaaggaatggtatagtatgtatggtatgctactttttgtgttgagagagaagagtagaataagaatatacgtgtgtatttgcaaagataaattctgaaatgatatataagaaaccaattaaaagtgtttggctgtagaaggagaataagactgtgaatgggatttggccacatacttttataggtagttatatttaaaaattttctgaaccatgtgtttgtacacatgacc-tttttaaaaattaGTGAATGA-------AGGAATGAAGTAGGATTATGAGAAAGAGATAAGAACAAAGGATCTAAGGGGCTGCCCATCTTTTTAGTACCCAGCGAATATTAATATATAACAATAGCAGCAAAAATTGGAAGAGTAGCCCCAGGAGGGTAGGGAGTCAGCCTTTCCTTTGTCTTTTCCTCAATTTCATATATTAAACAAAATAATCTGAGAATGATAAAACAATTTGAAATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17250463 846 -  99763055 TGTTA-----ATCCATTTACTGTTATGCAGTAAATCCCCAAAGAGCACATTTGCTTTGCCCAAGGGAGTCTTTTGCTACATACTGC--TGTACATAATGAAAACTAAAAAATTGGCTAACTTTTCAGCCTTGTGACCTTGTGGTGATTCAAATAGAGGCTTCATCAAAGGCAGATTCAGAAATGAACTTG--GTGTGTGGGTggttatgcttggcattattgtttgtaatagtatgatagggatgacttcagtgtccaccaacagggaactggttaagtaaactgtggtacatccaaacgatgaatactgtgcggttgtaaagaagaatgacaaagacctctgtactcatgtagaagaactcacatatat----tgtgtgtg-------ttttaagaggaacaaggaatggtatagtatgtatggtatgctactttttgtgttgagagagaagagtagaataagaatatacgtgtgtatttgcaaagataaattctgaaatgatatataagaaaccaattaaaagtgtttggctgtagaaggagaataagactgtgaaTGGGATTTGGCCACATACTTTTATAGGTAGTTATATTTAAAAATTTTCTGAACCATGTGTTTGTACACATGACC-TTTTTAAAAATTAGTGAATGA-------AGGAATGAAGTAGGATTATGAGAAAGAGATAAGAACAAAGGATCTAAGGGGCTGCCCATCTTTTTAGTACCCAGCGAATATTAATATATAACAATAGCAGCAAAAATTGGAAGAGTAGCCCCAGGAGGGTAGGGAGTCAGCCTTTCCTTTGTCTTTTCCTCAATTTCATATATTAAACAAAATAATCTGAGAATGATAAAACAATTTGAAATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       313110 846 +    378907 TGTTA-----ATCCATTTATTGTTATGCAGTAAATCCCCAAAGAGCACATTTGCTTTGCCCAAGGGAGTCTTTTGCTACATACTGC--TGTACATAATGAAAACTAAAAAATTGGCTAACTTTTCAGCCTTGTGACCTTGTGGTGATTCAAATAGAGGCTTCATCAAAGGCAGATTCAGAAATGAACTTG--GTGTGTGGGTAgttatgcttggcattattgtttgtaatagtatgatagggatgacttcagtgtccaccaacagggaactggttaagtaaactgtggtacatccaaacgatgaatactgtgcggttgtaaagaagaatgacaaagacctctgtactcatgtagaagaactcacatatat----tgtgtgtg-------ttttaagaggaacaaggaatggtatagtatgtatggtatgctactttttgtgttgagagagaagagtagaataagaatatacgtgtgtatttgcaaagataaattctgaaatgatatataagaaaccaattaaaagtgtttggctgtagaaagagaataagactgTGAATGGGATTTGGCCACATACTTTTATAGGCAGTTATATTTAAAAATTTTCTGAACCATGTGTTTGTACACATGACC-CTTTTAAAAATAAGTGAATGA-------AGGAATGAAGTAGGATTATGAGAAAGAGATAAGAACAAAGGATCTAAGGGGCTGCCCATCTTTTTAGTACCCAGCGAATATTAATATATAACAATAGCAGCAAAAATTGGAAGAGTAGCCCCAGGAGGGTAGGGAGTCAGCCTTTCCTTTGTCTTTTCCTCAATTTCATATATTAAACAAAATAATGTGAGAACGATAAAACAATTTGAAATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               17170317 858 - 121039945 TGTTCTGTTTATCCATTTATTTTTATGAAGTAAATTCCCAAAGAGCACATTTGCTTTGCCCAAGGGAGTCTTTTGCTGCATACTGCTGTGTACGTAATGAAAACTAAAAAAGGGGCTAACTATTCAGCCTAGTGACCTTGTGGTGATTCAAATAGAGGCTTCATCAAAGGCAGATTCGGAAATGAACTTGGTGTGTGTGGGTggttatgcttggcattattgtttgtaataggatgacagggatgacttcagagtccaccaacagggaactggttaagggaacggtggtacatccaaacaatgaatactgtgcagttgtaaagaagaatgagaaagacctctgtactcatgtggaagaactcacatatattgtgtgtgtgtg-------ttttaaaaggaacaaggaatggtatcgtatgcatggtatgctactttttgtgttgagagagaagagtagaataagaatatacatgtgtatttgcaaagataaattctgaaatgatatatacggaaccaattaaaagtgtttggctgtggaaggagaataagactgTGAATGGGATTTGGCCACATAATTTTATAGGTAGTTATATTTAAAATTTTTCTGAACTATGTATTTGTACACGTGACC-CTTTTAAAAATAAGTGAATGA-------AGGAATGAAGTAGGATTATGAGAAAGAGATAAGAACAAATGTTGTAAGGGGCTGCCCATCGTTTTAGTACCCAGTGAATATTAATACATAACAATAGCATTAAAAATTGGAAGAGTAGCCCCAGGAGGGTAGGGAGTCAGCCTTTCCTTTGTCTTTTCCTCAGTTTCATATATTAAACAAAATAATATGAGAACAATGAAACGATTTGAAAC-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60382747 850 + 169600520 TGTTT-----ATCCATTTATTGTTATGAAGTAAATCCCCAAAGAGTACATTTGCTTTGCCCAAGGGAGTCTTTTGCTACATACTGC--TGTATATAGTGAAAACTAAAAAAGGGGCTAACTTTTCAGCCTTGTGACCTTGCGGTGATTCAAACAGAGGCTTCATCAAAGGCAGATTCAGAAATGAACTTGGTGTGTGTGGGTggttatgcttggcattgttgtttgtaatagtatgatagggatgacttcagtgtccaccaacagggaactggttaagtaaactgtggtatatccaaacgatgaatactgtgcagttgtaaagaagaatgagaaagacctatgtactcatgtggaagaactcggatatat----tgtgtgtg---tttttttttaaaggaacaaggaatggtatagtatgtattgtacgccactttttatgttgagggagaagagtaaaataaagacatgtatgt--atttgcaaagataaattctgaaatgatatataagaaaccaatgaaaagtttttggctatggaaggagagtaagactgTGAATGGGATTTTGCCACATACTTTTATAAATAGCTGTATTTAAAAATTTTCTGAACTATGTATTTGTACATATGACCTTTTTTAAAAAAAAACGAATGA-------AAGAATGAAGTAGGATTATGAGAAAGAGATAAGAAAAAAGGATCTAAGGGGCTGCCCATGTTTTTAGTACCCAGTGAATATTAATACATAACAATAGCAGCAAAAATTGGAAGAGTGGCCCCAGGAGGGTAGGGAGTCAGCCTTTCCTTTGTCTTTTCCTCAATTTCATATATTTAAAAAAGTACTCTGAGAACAATAAAACAATTTGAAAC-
i rheMac8.chr7              I 5 C 0
s macFas5.chr7              108381137 841 - 171882078 TGTTT-----ATCCATTTATTGTTATGAAGTAAATCCCCAAAGAGCACATTTGCTTTGCCCAAGGGAGTCTTTGGCTACATACTGC--TGTATATAGTGAAAACTAAAAAAGGGGCTAACTTTTCAGCCATATGACCTTATGGTGATTCAAATAGAGGCTTCATCAAAGGCAGATTCAGAAATGAACTTGGTGTGTGTGGGTGGTTATGCTTGgc---attgtttgtaatagtatgatatggatgacttcagtgtccaccaacaggaaactggttaagtaaactgtggtacatccaaacaatgaatactgtgcagttgtaaagaagaatgagaaagacctatgtactca--tgcaaaagaacacatatat----tgtgtgtg-----tttttaaaaaggaacaaagaatggtatagtatgtattgtatgctactgtttgtgttgctagaaaagagtaaaataagaatataaatgtgcatttgcaaagataaattctgaaatgacatataagaaaccaatTAAAA----GTGGCTGTGGAAGGAGAATAAGACTGTGAATGGGATTTTGCCACATACTTTTATAGATA----TATTT-AAAATTTTCTGAACTATGTATTTGTACACATGACC-CTTTTAAAAATAAGTGAATGAAGGAATGAGGAATGAAGTAGGATTATGACAAAGAGATAAGAACAAAGGATCTAAGGGGCTGCCCATCTTTTTGGTACCCAGTGAATATTAATACATAACAATAGCAGCAAAAATTGGAAGAGTGGCCCTAGGAGGGTAGGGAGTCAGCCTTTCCTTTGTCTTTTCCTCAATTTCATACAT-AAAAAAAATAACCTGAGAACAATCAAACAATTTGAAAC-
i macFas5.chr7              I 5 C 0
s macNem1.NW_012011056v1      5373928 833 -   6271500 TGTTT-----ATCCATTTATTGTT-TGAAGTAAATCCCCAAGGAGCACATTTGCTTTGCCCAGGGGAGTCTTTTGCTACATACTGC--TGTACATAATGAAAACTAAAAATGGGGCTAACTATTCAGCCTTGTGACCTTGTGGTGATTCAAATAGAGGCTTCATCAAAGGCAGATCCAGAAATGAACTtggcatgtgtaggtggttttccttggcattattgtttgtaagagtatgatagtgatgacttcagtgtccaccaacagggaactggttaagtaaactgtggtatatcctaacgatgaatactgtgcagttgtaaagaagaataagaaagacctctgta--------gaaaaactcacatatat----tgtgtgtg-----tgttttaaaaggaacaaggattggcatcgtatgaatggtatgctactttttgtgttgagagagaagagtagaataagaatatacatgtgtatttgcaaagataaattctgaaatgatatataagaaaccaattaaaattgtttggctgtggaaggagaataagactgTGAATGGGATTTTGTCACATACATTCATAGTTA----TATTTAAAAATTTTCTGAACGATGTATTTGTACACATGACC-CTTTTAAAAATAAGTGAATGA-------GGAAATGAAGTAGGATTATGAGAAAGAGATAGGAACAAAGGATCTAAGGGGCTGCCCATCTTTTTAGTACCCAGTGAATATTAATATATAACAATAGCAGCAAAAATTGGAAGAGTAGCCCCAGGAGGGTAGGGAGTCAGCCTTTCCTTTGTCTTTTCCTCAATTTCATATGT--TAAAAAATAA-CTGAGAACAAGAAAACAATTTGAAAT-
i macNem1.NW_012011056v1    I 5 C 0
s cerAty1.NW_012002657v1      1832681 848 -   1987038 TGTTT-----ATCCATTTATTGTTATGAAGTAAATCCCCAAAGAGCACATTTGCTTTGCCCAAGGGAGTCTTTTGCTACATACTGC--TGTATATAGTGAAAACTAAAAAAGGGGCTAACTTTTCAGCCTTGTGACCTTGCAGTGATTCAAACAGAGGCTTCATCAAAGGCAGATTCAGAAATGAACTtggtgtgtgtgggtggttatgcttggcattgttgtttgtaatagtatgatagggatgacttcagtgtccaccaacagggaactggttaagtaaactgtggtatatccaaacgatgaatactgtgcagttgtaaagaagaatgagaaagacctatgtactcatgtggaagaactcggatatat----tgtgtgtgtgttttttttttaaaggaacaaggaatggtatagtatgtattgtacgccactttttatgttgagggagaagagtagaataaagacatgtatgt--atttgcaaagataaattctgaaatgatatataagaaaccaatgaaaagtttttgtctatggaaggagagtaagactgtgaatgggattttgccacatacttttataaatagctgtatttaaaaattttctgaactatgtatttgtacatatgacc-tttttaaaaa----tgaatga-------aAGAATGAAGTAGGATTATGAGAAAGAGATAAGAAAAAAGGATCTAAGGGGCTGCCCATGTTTTTAGTACCCAGTGAATATTAATACATAACAATAGCAGCAAAAATGGGAAGAGTAGCCCCAGGAGGGTAGGGAGTCAGCCTTTCCTTTGTCTTTTCCTCAATTTCATATATTTAAAAAAGTACTCTGAGAACAATAAAACAATTTGAAAC-
i cerAty1.NW_012002657v1    I 5 C 0
s manLeu1.NW_012105520v1       331237 845 -   1458659 TGTTT-----ATCCATTTATTGTTTTGAAGTAAATCCCCAAAGAGCACATTTGCTTTGCCCAAGGGAGTCTTTGGCTACATACTGC--TGTATATAGTGAAAACTAAAAAAGGGGCTAACTTTTCAGCCATATGACCTTATGGTGATTCAAATGGAGGCTTCATCAAAGGCAGATTCAGACATGAACTTGGTGTGTGTGGGTggttatgcttggc---attgtttgtaatagtatgatacggatgacttcagtgtccaccaacaggaaactggttaagtaaactgtggtacatccaaacaatgaatactgtgcagttgtaaagaagaatgagaaagacctatgtactca--tgcaaaagaacacatatat----tgtgtgtg-----tttttaaaaaggaacaaagaatggtatagtatgtattgtatgctactgtttgtgttgctagaaaagagtagaataagaatataaatgtgcatttgcaaagataaattctgaaatgacatataagaaaccaattaaaagtgtttggctgtggaagaagaaTAAGACTGTGAATGGGATTTTGCCACATACTTTTATAGATA----TATTT-AAAATTTTCTGAACTATGTATTTGTACAAATGACC-CTTTTAAAAATAAGTGAATGAAGGAATGAGGAATGAAGTTGGATTATGACAAAGAGATAAGAACAAAGGATCTAAGGGGCTGCCCATCTTTTTGGTACCCAGTGAATATTAATACATAACAATAGCAGCAAAAATTGGAAGAGTAGCCCCAGGAGGGTAGGGAGTCAGCCTTTCCTTTGTCTTTTCCTCAATTTCATGCAT-AAAAAAAATAACCTGAGAACAATAAAACAATTTGAAAC-
i manLeu1.NW_012105520v1    M 1766 C 0
s colAng1.NW_012117110v1         9708 850 -   1784207 TGTTT-----ATCCATTTATTGTTATGAAGTAAATCCCCAAAGAGTACATTTGCTTTGCCCAAGGGAGTCTTTGGCTACATACTGC--TGTATATAGTGAAAACTAAAAAAGGGGCTAACTTTTCAGCCTTGTGACCTTGTGGTGATTCAAACAGAGGCTTCATTGAAGGCAGATTCAGAAATGAACTTGGTGTGTGTGGGTggttatgcttggcattgttgtttgtaatagtatgatagggatgacttcagtgtccaccaacagggaactggttaagtaaactgtggtacatcctaacgatgaatactgtgcagttgtaaagaagaatgagaaagacctatgtactcatgtggaagaactcagatatat----tgtgtgtg-----tttttaaaaaggaacaaggaatggtatagtatgtattgtacactactgtttg-gttgctggagaagaatagaataagaacatgtatgt--atttgcaaagataaattctgaaatgatatataagaaaccaattaaaagtgtttggctgtggaaggagaaTAAGACTGTGAATGGGATTTTGCCACATACTTTTATAGATAGTTATATTTAAAAATTTTCTGAACTATGTATTTGTACACATGACC-CTATTAAAaataagtgaatgaaggaatgaggaatgaaGTGGGATTATGAGAAAGAGATAAGAACAAAGGATCTAAGAGGCTGCCCATCTTTTTAGTACC--GTGAATATTAATACATAACAATAGCAGCAAAAATTGGAGGAATAGCCCCAGGAGGGTAGGGAGTCAGCCTTTCCTTTGTCTGTTCCTCAATTTCATACAT-AAAAAAAATAACCTGAGAACAATAAAACAATTTGAAAC-
i colAng1.NW_012117110v1    I 5 C 0
e calJac3.chr10              18035944 83844 + 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e chlSab2.chr29              21074217 218 -  24206276 I

a score=1266789.000000
s hg38.chr15_KI270850v1_alt    215352 247 +    430880 AAAAATGTCTCCAGATCTCTTA-----AAAGGAAGCTGGGGCAGCTTTCTGTAGCGCACTTCCCAAAAATGGGCTGATTTACCTCAAGAGGCAGGGATTCTAGCCTACATGGGATACATACAGGag-aaaacaaaatcagaaaaagaaaagagatttaaatataaataAATGAAAATAACAATTCTCCCTCATTATAAAGGAAATC--AT-TCTTTTTGTAATAATTTGGATGACAAATATTAAGAAAAATCTTTA
s panTro5.chr15              18025049 247 -  83230942 AAAAATGTCTCCAGATCTCTTA-----AAAGGAAGCTGGGGCAGCTTTCTGTAGCGCACTTCCCAAAAATGGGCTGATTTACCTCAAGAGGCAGGGATTCTAACCTACATGGGATACATACAGGAG-AAAACAAAATCAGAAAAAGAAAAGAGATTTAAATATAAATAAATGAAAATAACAATTCTCCCTCATTATAAAGGAAATC--AT-TCTTTTTGTAATAATTTGGATGACAAGTATTAAGAAAAATCTTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17251309 247 -  99763055 AAAAATGTCTCCAGATCTCTTA-----AAAGGAAGCTGGGGCAGCTTTCTGTAGCGCACTTCCCAAAAATGGGCTGATTTACCTCAAGAGGCAGGGATTCTAGCCTACATGGGATACATACAGGAG-AAAACAAAATCAGAAAAAGAAAAGAGATTTAAATATAAATAAATGAAAATAACAATTCTCCCTCATTATAAAGGAAATA--AT-TCTTTTTGTAATAATTTGGATGACAAATATTAAGAAAAATCTTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       313956 247 +    378907 AAAAATGTCTCCAGATCTCTTA-----AAAGGAAGCTGGGGCAGCTTTCTGTAGCGCACTTCCCAAAAATGGGCTGATTTACCTCAAGAGGCAGGGATTCTAGCCTACATGGGATACATACAGGag-aaaaaaaaatcagaaaaagaaaagagatttaaatataaataAATGAAAATAACAATTCTCCCTCATTATAAAGGAAATC--AT-TCTTTTTGTAATAATTTGGATGACAAATATTAAGAAAAATCTTTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               17171175 246 - 121039945 AAAAATGTGTCCAGATCTCTTA-----AAAGGAAGTTGGGGCAGGTTTCTGTAGTGCACTTCCCAAAAACAGGCTGATTTACCTCAAGAGGCAGGGATTCTAGCCTACATGGGATACATACAGGAG-GAAA-AAAATCAGAAAAAGAAAAAAGATTTAAATATAAATAAATGAAAATAACAATTCTCCCTGATTATAAAGGAAATC--AT-TCTTTTTGTAATAATTTGGGTGACAAATATTAAGAAAAATCTTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60383597 250 + 169600520 AAAAATGTCTCCAGATCTCTTAAAGT-AAAGGAGGATGGGGCAGCTTTATGTAGTGCACTTCCCAACAACGGGCTGATTTACCTCAAGAGGCAGGGATTCTAGCCTACATGGGatacaaacaggaa-aa---aaaataagaaaaagaaaagagatttaaatataaataAATGAAAATAACACTTCTCCCTGATTATAAAGGAAATCATAT-TCTTTTCATGATAATTTGGATGACAAATATTAAGAAAAATCTTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108381978 248 - 171882078 AAAAATGTCTCCAGATCTCTTAAAGT-AAAGGAGGATGGGGCAGCTTTATGTAGTGCACTTCCCAACAATGGGCTGATTTACCTCAAGAGGCAGGGATTCCAGCCTACATGGGATACATACAGGAG-AA---AAAATAAGAAAAAGAAAAGAGATTTAAATACAAATACATGCAAATAACAAttctccctgattataaaggaaatc--at-tctttttgtaataatttgcatgacaaatattaggaaaaatcttta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5374761 245 -   6271500 AAAAATGTCTCCAGATCTCTTA-----AAAGGAAGATGGGGCAGTGTTATGTAGTGCACTTCCCAAAAATGGGCTGATCTACATCAAGAGGCAGGGATTCTGACCTACACGGGAAACATACAGGagaaa---aaaataagaaaaagaaaagagatttaaatacaaataCATGAAAATAGCAATTCTCCCTGATTGTATAGGAAATG--AT-CCCTTTTGTAATTGTTTGGATGACAAATATTAAGAAAAATCTTTA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1833529 250 -   1987038 AAAAATGTCTCCAGATCTCTTAAAGT-AAAGGAGGATGGGGCAGCTTTATGTAGTGCACTTCCCAACAATGGGCTGATTTACCTCAAGAGGCAGGGATTCCAGCCTACATGGGatacaaacaggaa-aa---aaaataagaaaaagaaaagagatttaaatataaataAATGAAAATAACACTTCTCCCTGATTATAAAGGAAATCATAT-TCTTTTCATGATAATTTGGATGACAAATATTAAGAAAAATCTTTA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       332082 248 -   1458659 AAAAATGTCTCCAGATCTCTTAAAGT-AAAGGAGGATGGGGCGGCTTTATGTAGTGCACTTCCCAACAATGGGCTGATTTACCTCAAGAGGCAGGGATTCCAGCCTACATGGGATACATACAGGAG-AA---AAAATAAGAAAAAGAAAAGAGATTTAAATACAAATACATGCAAATAACAATTCTCCCTGATTATAAAGGAAATC--AT-TCTTTTTGTAATAATTTGGATGACAAATATTAGGAAAAATCTTTA
i manLeu1.NW_012105520v1    C 0 I 340
s colAng1.NW_012117110v1        10558 248 -   1784207 AAAAATGTCTCCAGATCTCTTAAAGT-AAAGGAGGATGGGGCAGCTTTATGTAATGCACTTCCCAACAACGGGCTGATTTACCTCAAGAGGCAGGGATTCCAGCCTACATGGGATACATACAGGAG-AA---AAAATAAGAAAAAGAAAAGAGATTTAAATACAGATACATGAAAATAGCAATTCTCCCTGATTGTATAGGAAGTC--AT-TCCTTTTGTAATAATTTGAATGACAAATATTAAGAAAAAGCTTTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             113854865 244 - 132174527 AAAAATGTGTCCAGATCTGTTGAAACACAAGGAAGATGGGGCAGCTTCATGTAGGGCACTTGCCAAAAATGGGCTGATTTACCTCAAGAGGCAGGGATTCTAGCCTACATGGGATACATACAGGAG-AAA--AAAATAAGAAAAAG-----AGATTTAAATATAAATAAATGAAAATAAC--TTCTTTCTGATTACAAAGGAAATC--ACATCTCTTTGTAATACTTTGGATGACAAATATTAGGAAAAAGCTTTA
i calJac3.chr10             n 83844 C 0
e otoGar3.GL873530            6785474 68799 -  36342412 T
e chlSab2.chr29              21074217 218 -  24206276 I

a score=755127.000000
s hg38.chr15_KI270850v1_alt    215599 145 +    430880 ATTTGCCACTCAAAACATTGTGGTTTGTTGCTTTTTATACGTTTTTATGCACATAAACCTTTTAAAAAGTAGAATCGTAGTATGTAGTCTTTTGTCACTTACTATATTTTGGGCATATTTCTGTGGCAGTAAATATATCCTGGCA
s panTro5.chr15              18025296 145 -  83230942 ATTTGCCACTCAAAACACGGTGGTTTGTTGCTTTTTATACGTTTTTATGCACATAAACCTTTTAAAAAGTAGAATCGTAATATGTAGTCTTTTGTCACTTACTATATTTTGGGCATATTTCTGTGGCAGTAAATATATCCTGGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17251556 145 -  99763055 ATTTGCCACTCAAAACACGGTGGTTTGTTGCTTTTTATACGTTTTTATGCACATAAACCTTTTAAAAAGTAGAATCGTAATATGTAGTCTTTTGTCACTTACTATATTTTGGGCATATTTCTGTGGCAGTAAATATATCCTGGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       314203 145 +    378907 ATTTGCCACTCAAAACATTGTGGTTTGTTGCTTTTTATACGTTTTTATGCACATAAACCTTTTAAAAAGTAGAATCGTAATATGTAGTCTTTTGTCCCTTACTATATTTTGGGCATATTTCTGTGGCAGTAAATATATCCTGGCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               17171421 145 - 121039945 ATTTGCCACTCAAAGCATTCTGGTTTGTTGCTTTTTAGATGTTTTTATGCATATAAACCTTTTAAAAAGTAGAATTGTAATATATAGTCTTTTGTCACTTACTATATTTTGGGCACATTTCTGTGGCAGTAAATATATCCTGGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60383847 145 + 169600520 ATTTGCCACTGAAAGCATTCTGGTTTGTTGCTTTACATACTTTTTTATGCATATAAACCTTTTAAAAAGCAGAATCGTAATATATAGTCTTTTGTCACTTACTATATTTTGGGCATATTTCTGTGGCAGTAAATATATCCTGGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108382226 145 - 171882078 atttgtcactcagagcattctggtttgttgctttttatatgtttttatgcatataaaccttttaaaaagtagaatcataatatatagtcttttgtcacttagtatattttgagtatatttctgtggcagtaaatatatcctggca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5375006 139 -   6271500 ATTTGCCACTCAAAACATTCTGGTTTGTTACTTTTTATATGTTTTTATGCATATAAACCTTTTAAAAAGTAGAATCATAATA------CTTTTGTCACGTAGTATATTTTGGGCATATTTCTGTGGCAGTCGATATATCCTGGCA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1833779 145 -   1987038 ATTTGCCATTCAAAGCATTCTGGTTTGTTGCTTTACATACTTTTTTATGCATATAAACCTTTTAAAAAGCAGAATCGTAATATATAGTCTTTTGTCACTTACTACATTTTGGGCATATTTCTGTGGCAGTAAATATATCCTGGCA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       332670 139 -   1458659 ATTTGCCACTCAAAACATTCTAGTTTGTTGCTTTTTATATGTTTTTATGCATATAAACCTTTTTAAAAGTAGAATCATAATA------CTTTTGTCACATACTATATTTTGGGCATATTTCTGTGGCAGTCAATATATTCTGGCA
i manLeu1.NW_012105520v1    I 340 C 0
s colAng1.NW_012117110v1        10806 145 -   1784207 ATTTGCCACTCAAAACATTCTGGTTTGTTGCTTTTTATATGTTTTTATGCATATAAACCTTTTAaaaagtagaataataatatatagtcttttgtcacttagtatattttgggcatatttctgtggcagtaaatatatcctgaca
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             113855109 144 - 132174527 ATTCTGCACTCAAaacattctggtttgttgctttttatacttttttatgcatataaacatttt-aaaagttgaatcataatatacagtcttttgtcatttactatattttgtgcatatttctgtggcagtaaatacatcccggca
i calJac3.chr10             C 0 I 2596
e otoGar3.GL873530            6785474 68799 -  36342412 T
e chlSab2.chr29              21074217 218 -  24206276 I

a score=248531.000000
s hg38.chr15_KI270850v1_alt    215744 55 +    430880 TCATCATTTTTAATAGCTGGATGTATATTAAGTTAATCACTGCCACCCCAGAGGt
s panTro5.chr15              18025441 55 -  83230942 TCATCATTTTTAATAGCTGGATGTATATTAAATTAATCACTGCCACCCCAGAggt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17251701 55 -  99763055 TCATCATTTTTAATAGCTGGATGTATATTAAGTTAATCACTGCCACCCCAGAGGt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       314348 55 +    378907 TCATCATTTTTAATAGCTGGATGTATATTAAGTTAATCACTGCCACCCCAGAGGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               17171566 55 - 121039945 TCATCATTTTTAATAGCTGGATGTATATTAAGTTAATCACTACCACCCCAGAggt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60383992 53 + 169600520 TCATCATTTTTAATAGCTGGATGTATATT--GTTAATCATTGTGACGCCAGAGGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108382371 55 - 171882078 tcatcatttttaatagctgggtgtatattAAGTTAACCATTGCCACCCCAGAGGT
i macFas5.chr7              C 0 I 305
s macNem1.NW_012011056v1      5375145 55 -   6271500 TCATCATTTTTAACAGCTGGATGTATATTAAGTTAATCATTGCCACCCCAGAGGT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1833924 53 -   1987038 TCATCATTTTTAATAGCTGGATGTATATT--GTTAATCATTGCGACGCCAGAGGt
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       332809 55 -   1458659 TCATCATTTTTAACAGCTGGATGTATATTAAGTTAATCATTGCCAGCCCAGAGGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        10951 55 -   1784207 tcatcatttttaatagctgGGTGTATATTAAGTTAACCATTGCCACCCCAGAGGt
i colAng1.NW_012117110v1    C 0 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e chlSab2.chr29              21074217 218 -  24206276 I

a score=1674508.000000
s hg38.chr15_KI270850v1_alt    215799 379 +    430880 gaattttcttatacacacattttaatgggctcgagcaaacatttttggactgaattcatagaagtagaatttctggaggaaaataatttttagggtttttaatagaaattttcaaatcattctccaggaaaagtgactcaggttatactcccaccaacaaggacagagctccaggttcccctttccatttgtcatctttcctgcctttatacagaaaatctcattgttttcatgacatttctttgatttcttgtgcttttgaatc-tttgtatatgcc-attggccatttttattcttgtgagaagtgccagtttctccattgcccattttcggttgaaaatcatttgt--------ttttttttctcagtaattttaaagatttcttt
s panTro5.chr15              18025496 378 -  83230942 gaattttcttatacatacattttaatgggcttgagcaaacatttttggactgaattcatagaagtagaatttctggaggaaaataatttttagggtttttaatagaaattttcaaatcattctccaggaaaagtgactccggttatactcccaccaacaaggacagagctccaggttcccctttccatttgtcatctttcctgcctttatacagaaaatctcattgttttcatgacatttctttgatttcttgtgcttttgaatc-tttgtatatgcc-attggccatttttattcttgtgagaagtgccagtttctccattgcccattttcggttgaaaatcatttg---------ttttttttctcagtaattttaaagatttcttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17251756 378 -  99763055 gaattttcttatacatacattttaatgggcttgagcaaacatttttggactgaattcatagaagtagaatttctggaggaaaataatttttagggtttttaatagaaattttcaaatcattctccaggaaaagtgactccggttatactcccaccaacaaggacagagctccaggttccccTTTCCATTTGTCATCTTTCCTGCCTTTATACAGAAAatctcattgttttcatgacatttctttgatttcttgtgcttttgaatc-tttgtatatgcc-attggccatttttattcttgtgagaagtgccagtttctccattgcccattttcggttgaaaatcatttg---------ttttttatctcagtaattttaaagatttcttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       314403 377 +    378907 GAATTTTCTTATACATACATTTTAATGGGCTCGAGCAAACATTTTTGGACTGAATTCAtagaagtagaatttctggaggaaaataatttttagagtttttaatagaaattttcaaatcattctccaggaaaagtgactccggttatactcccaccaacaaggacagagctccaggttctcctttccatttgtcatctttcctgcctttctacagaaaatctgattgttttcatgacatttctttgatttcttgtgcttttgaatc-tttgtatatgcc-attggccatttttattcttgtgagaaatgccagtttctccattgcccattttcggttgaaaatcatttg----------tttttttctcagtaattttaaagatttcttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               17171621 379 - 121039945 gaattttcttatacatacattttaatgggctcaagcaaacatttttggactgaattcatagaagtagaatttctggaggaaaataatttttagggtttttaatagaaattttcaaattattctccaggaaaagtgactcaggttttactcccaccaacaaggacagagctccaggttcccctttccatttgtcatctttgctgcctttatacagaaaatctcattgttttcatgacattgctttgatttcttgtgcttttgaatc-tttttatatgcc-attggccatttttattcttgtgagaagtgccagtttctccaatgcccattttcggttgaaaatcatttgt--------ttttttttctaagtaattttaaagatttcttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60384045 382 + 169600520 GAATTTTCTTCTATACACGTTTTAATGGACTCAAGCAAGCATTTTTGGACTAAATTCATAGAAGTAGAATTTCTGGAGGAAAATAATTTTTAGGGTTTTTAATAGAAATTTTCCAATTATCCTCCAGGAAAAGTGACTCAGGTTATACTCCCACCAACAAGGACAAAGCTCCAGGTTCCCCCTTCCATTTGTCATCTTTGTTGCCTTTATACAGAAAatctcattgttttcatcacatttctttgatttctagtgcttttgaatcttttctatatgcctattggccatttttattcttgagagaagtgcctgtttctcccttgccaattgtctgttgaaaatcacttgtt-------ttttttttctgagtaattttaaaaatttcttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108382731 380 - 171882078 gaattttcttatatatacattttaatggactcgagcaagcatttttggactgaattcacagaagtagaatttctggaggaaaataatttttagggtttttcattgaaattttcaaattatcctccaggaaaagtgacccaggttatactcccactaacaaggaaagagctccaggttcccccttccatttatcatctttcctgcctttatacagaaaatctcaccgttttcatgacaattttttgatttctagtgcttttgaatc-tttctatatgcc-attggccatttttattcttgtgagaagcgccagtttctccattgcccattattagttgaaattcatttgtt-------tttcttttcttaataattttaaagatttcttt
i macFas5.chr7              I 305 C 0
s macNem1.NW_012011056v1      5375200 379 -   6271500 GAATTTTCTTATATATACGTTTTAATGGAGTTGACCAAACATTTTTGGACTGGATTCATAGAAGTAGAATTTCTGGAGGAAAATAATTTTTAGGGTTTTTCATTGAAATTTTCAAATTATCCTCCAGGAAAAGTGACTCAGGTTATACTCCCACTAACAAGGACAGAGCTCCAGGTACCCCCTTCCATTTGTCATCTTTTGTGCCTTTATACAGAAAatctcaccgttttcatgat-ttttttttatttttagtgcttttgaatc-tttctatatgcc-attggccatttttattcttgtgagaagtgccagtttctccattgcccattattagttgaaattcatttgtt-------tttcttttcttaataattttaaagatttcttt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1833977 382 -   1987038 gaattttcttctatacacgttttaatggactcgagcaagcatttttggactaaattcatagaagtagaatttctggaggaaaataatttttagagtttttaatagaaattttccaattatcctccaggaaaagtgactcaggttatactcccaccaacaaggacagagctccaggttcccctttccatttgtcatctttgttgcctttatacagaaaatctcattgttttcatcacatttctttgatttctagtgcttttgaatcttttctatatgcctattggccgtttttattcttgagagaagtgcctgtttctcccttgccaattgtctgttgaaaatcacttggt-------ttttttttctgagtaatttaaaaaatttcttt
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       332864 377 -   1458659 GAATTTTCTTATACACACATTTTAATGGACTTGAGCAAACATTTTTGGACTGAATTCGTAGAAGTAGAATTTCTGGAGGAAAATAATTTTTAGGGTTTTTAATCAAAATTTTCAAATTATCCTCCAGCAAAAGTGACTCAGGTTATACTCCCACTAACAAGGACAGAGCTCCAGGTTCCCCCTTCCGTTTGTCATCTTTCTTGCCTTTATACAGAAAATCTCACCGTTTTCATGAcatttttttgatttctagtgcttttgaatc-tttctatatgcc-attggccatttttattcttgtgagaagtgccagtttctccattgcccattattagttgaaattcatttgtt-------tttctttt---aataattttaaagatttcttt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        11006 387 -   1784207 gaattttcttatatatacattttaatggactcgtgtaagcatttttggactgaattcatagaagtagaatttctggaggaaaataatttttagggtttttaatagaaattttcaaattatcctccaggaaaaatgactcaggttatacttgcgccaacaaggacagagctccaggttcccccttccatttgtcatattttctgcctttatacaccaaatctcattgttttcatgagatttctttgatttctagtgcttttgaatc-tttttatgtgtc-attggccatttttattcttgtaagaagtgccaatttctccattgcccatttttggttgaaaatcatttgttttgtttgttttttttcttagtaattttaaagatttcttt
i colAng1.NW_012117110v1    C 0 I 606
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e chlSab2.chr29              21074217 218 -  24206276 I

a score=141783.000000
s hg38.chr15_KI270850v1_alt    216178 37 +    430880 atagtctaaggatacaagccttttatctgtcattgag
s panTro5.chr15              18025874 37 -  83230942 atagactaaggatgcaagccttttatctgtcattgag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17252134 37 -  99763055 atagactaaggatgcaagccttttatctgtcattgag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       314780 37 +    378907 atagactaaggatgcaagccttttatctgtcattgag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               17172000 37 - 121039945 ataggctaaggatacaaaCCTTTTATCTGTCATTGAG
i nomLeu3.chr6              C 0 n 0
s rheMac8.chr7               60384427 37 + 169600520 acagactgaggatacaaaccttttatctgtcattgag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108383111 37 - 171882078 atagactgaggatacaaaccttttatctgtcattgag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5375579 37 -   6271500 atagactaaggatacaaaccttttatctgtcattgag
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1834359 37 -   1987038 acaggctgaggatacaaaccttttatctgtcattgag
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       333241 37 -   1458659 atagactaaggatacaaaccttttacctgtcattgag
i manLeu1.NW_012105520v1    C 0 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e colAng1.NW_012117110v1        11393 606 -   1784207 I
e chlSab2.chr29              21074217 218 -  24206276 I

a score=155817.000000
s hg38.chr15_KI270850v1_alt    216215 45 +    430880 gtgac-aaaactttctcccagtaagt-aatttgtcatttcatttttt
s panTro5.chr15              18025911 46 -  83230942 gttacaaaaactttctcccagtaagt-aatttgtcatttcatttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17252171 45 -  99763055 gttac-aaaactttctcccagtaagt-aatttgtcatttcatttttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       314817 46 +    378907 gttacaaaaactttctcccagtaagt-aatttctcatttcatttttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102170418 46 + 121039945 gttaaaaaaactttctcccagtaagt-aatttgtcacttcatttttt
i nomLeu3.chr6              I 4008 C 0
s rheMac8.chr7               60384464 47 + 169600520 gttacaaaaactttctcccagtaagtgggtttgtcatttcacttttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108383148 46 - 171882078 gttacaaaaactttctcccattaagt-aatttgtcatttcatttttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5375616 46 -   6271500 gttacaaaaactctctcccattaagt-aacttgtcatttcatttttt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1834396 46 -   1987038 gttacaaaaactttctcccagtaagt-agtttgtcatttcacttttt
i cerAty1.NW_012002657v1    C 0 I 116
s manLeu1.NW_012105520v1       333278 42 -   1458659 gttacaaaaactttctccc----agt-aatttgtcatttcatttttt
i manLeu1.NW_012105520v1    C 0 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e colAng1.NW_012117110v1        11393 606 -   1784207 I
e chlSab2.chr29              21074217 218 -  24206276 I

a score=7941.000000
s hg38.chr15_KI270850v1_alt    216260  6 +    430880 C---------ttctt
s panTro5.chr15              18025957  6 -  83230942 c---------ttctt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17252216  6 -  99763055 C---------TTCCt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       314863  6 +    378907 C---------ATCTt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102170464 15 + 121039945 Cttccttcttttctt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60384511  6 + 169600520 t---------cttct
i rheMac8.chr7              C 0 I 238
s macFas5.chr7              108383194  6 - 171882078 c---------ttcct
i macFas5.chr7              C 0 I 4
s macNem1.NW_012011056v1      5375662  6 -   6271500 c---------ttcct
i macNem1.NW_012011056v1    C 0 I 4
s manLeu1.NW_012105520v1       333320  6 -   1458659 c---------ttcct
i manLeu1.NW_012105520v1    C 0 I 4
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e colAng1.NW_012117110v1        11393 606 -   1784207 I
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1834442 116 -   1987038 I

a score=18368.000000
s hg38.chr15_KI270850v1_alt    216266 15 +    430880 ttctttttcctttc-------------c
s panTro5.chr15              18025963 28 -  83230942 tttcctttcctttccctttctttctttc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              17252222 14 -  99763055 tctttttcctttcc--------------
i panPan2.chr15             C 0 N 0
s gorGor5.CYUI01015946v1       314869 15 +    378907 ttctttttcctttc-------------c
i gorGor5.CYUI01015946v1    C 0 I 14
s nomLeu3.chr6              102170479 15 + 121039945 ttctttttcctttc-------------c
i nomLeu3.chr6              C 0 I 15
s macFas5.chr7              108383204 15 - 171882078 ttcccttccctttc-------------c
i macFas5.chr7              I 4 C 0
s macNem1.NW_012011056v1      5375672 15 -   6271500 ttcccttcccttcc-------------c
i macNem1.NW_012011056v1    I 4 C 0
s manLeu1.NW_012105520v1       333330 15 -   1458659 ttcccttctccttc-------------c
i manLeu1.NW_012105520v1    I 4 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e colAng1.NW_012117110v1        11393 606 -   1784207 I
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1834442 116 -   1987038 I
e rheMac8.chr7               60384517 238 + 169600520 I

a score=211292.000000
s hg38.chr15_KI270850v1_alt    216281 194 +    430880 tttccc--tttc-----tttcttttccttgtttctttct---ttcttcttcttccttcctt-gctttccttttctttcttgctttccattcttactttcttttcttttccctccctccctccctc------------------------tctttctttc---ctctttctttttc--tt-------------tctctctttttctttc-----ttctttccctctctctctttcttcctttcctttctttct
s panTro5.chr15              18025991 190 -  83230942 tttctctttttc-----tttcttttccttgtttctttctttcttcttcttcttccttcctt-gctttccttttctttcttgctttccgttcttactttcttttcttttccctccctccctctct-------------------------------tttt---ctctttttctttc-----------------tctctctttttctttc-----ttctttccctctctctctttcttcctttcctttctttct
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       314898 191 +    378907 tttctc--tttt-----tttcttttccttgtttctttctttcttcttcttcttccttcctt-gctttccttttctttcttgctttccgttcttactttcttttcttttccctccctccctcttt------------------------------ctttc---ctcttttttctcttttt-------------tttctctttttctttc-----ttctttcc--ctctctctttcttcctttcctttctttct
i gorGor5.CYUI01015946v1    I 14 C 0
s nomLeu3.chr6              102170509 220 + 121039945 tttctt--tttc-----tttcttttccttgtttctttctttcttcttcttctaccttccttcactttcattttctttcttggtttccgttcttactttcttttcttttccctccctccctctctctttctctttctttc---------ttctttctttc---ctctttcattttctctt-------------tttctttctttctctctctttttctttccgtctctctctttcttcctttcttttctcttt
i nomLeu3.chr6              I 15 C 0
s macFas5.chr7              108383219 228 - 171882078 tttcct--ctcc-----tttcttttccttctttctttct---------ttctgcattcttt--ctttctccttcttccttccttgccattcttactttgctttttcctccctttttccctctttctctcccttccttcctttttttctttctttctttctttctctttctttctttctttcctattctttcctctctctttctttct------ttctctctctctctctctttcatcctttcctttctttct
i macFas5.chr7              C 0 I 20
s macNem1.NW_012011056v1      5375687 217 -   6271500 tttcct--ctcctttcttttcttttccttctttctttct---------ttttgcattcttt--ctttctccttcttccttccttgccattcttactttggttttttctccctttttccctctttctctccctttctttctttctttttctttttctttc---ctctgtctttctctctt-------------tctttctctttttct------ttctttccctctctctctttcatcccttcctttctttct
i macNem1.NW_012011056v1    C 0 I 20
s manLeu1.NW_012105520v1       333345 180 -   1458659 tttcct--ctct-----tttcttttccttctttctttct---------ttctgca----tt--ctttctccttcttccttccttgccattcttactttgctttttcctccctttttcc--ctttctctccctttctttc-----------------------ctctttc------tctt-------------tctttctctttttct------ttctttccctctctctctttcatcctttcctttctttct
i manLeu1.NW_012105520v1    C 0 I 16
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e colAng1.NW_012117110v1        11393 606 -   1784207 I
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1834442 116 -   1987038 I
e rheMac8.chr7               60384517 238 + 169600520 I

a score=46616.000000
s hg38.chr15_KI270850v1_alt    216475 27 +    430880 ctttattccctccctccctccttcttc
s panTro5.chr15              18026181 27 -  83230942 ctttgttccctcctttcctccttcttt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       315089 27 +    378907 ctttgttccctccctccctccttcttc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102170729 27 + 121039945 ctttgttccctccctccctccttcctt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60384755 27 + 169600520 ccttctttccttccttccttcttcctt
i rheMac8.chr7              I 238 C 0
s macFas5.chr7              108383467 27 - 171882078 cctccctccctcccttcctccttcctt
i macFas5.chr7              I 20 C 0
s macNem1.NW_012011056v1      5375924 27 -   6271500 cctcccttcctccttgcttcgttactt
i macNem1.NW_012011056v1    I 20 C 0
s manLeu1.NW_012105520v1       333541 27 -   1458659 tctccctccctcccttcctccttcctt
i manLeu1.NW_012105520v1    I 16 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e colAng1.NW_012117110v1        11393 606 -   1784207 I
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1834442 116 -   1987038 I

a score=-18156.000000
s hg38.chr15_KI270850v1_alt    216502  7 +    430880 cc----------------ttttt
s panTro5.chr15              18026208  6 -  83230942 cc-----------------tttt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       315116  7 +    378907 cc----------------ttttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102170756 15 + 121039945 cctttcttcc--------ttttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60384782  7 + 169600520 ----tct-----------tttc-
i rheMac8.chr7              C 0 I 2
s macFas5.chr7              108383494 18 - 171882078 ----ccttcctcccttcttttc-
i macFas5.chr7              C 0 I 12
s macNem1.NW_012011056v1      5375951  9 -   6271500 ----ccttc---------tttc-
i macNem1.NW_012011056v1    C 0 I 16
s manLeu1.NW_012105520v1       333568 15 -   1458659 ----ccttcctccct---tttc-
i manLeu1.NW_012105520v1    C 0 I 12
s colAng1.NW_012117110v1        11999  6 -   1784207 ----------------cctttc-
i colAng1.NW_012117110v1    I 606 I 1
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e chlSab2.chr29              21074217 218 -  24206276 I
e cerAty1.NW_012002657v1      1834442 116 -   1987038 I

a score=34169.000000
s hg38.chr15_KI270850v1_alt    216509 11 +    430880 tttctttcttt
s panTro5.chr15              18026214 11 -  83230942 tttctttcttt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       315123 11 +    378907 tttctttcttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102170771 11 + 121039945 ttactttcttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60384791  8 + 169600520 ttcctttc---
i rheMac8.chr7              I 2 C 0
s macFas5.chr7              108383524 11 - 171882078 tttctttcttt
i macFas5.chr7              I 12 C 0
s macNem1.NW_012011056v1      5375976 11 -   6271500 tttctttcttt
i macNem1.NW_012011056v1    I 16 C 0
s chlSab2.chr29              21074435 11 -  24206276 tttctttcttt
i chlSab2.chr29             I 218 C 0
s manLeu1.NW_012105520v1       333595 11 -   1458659 tttctttcttt
i manLeu1.NW_012105520v1    I 12 C 0
s colAng1.NW_012117110v1        12006 11 -   1784207 tttctttattt
i colAng1.NW_012117110v1    I 1 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e cerAty1.NW_012002657v1      1834442 116 -   1987038 I

a score=27270.000000
s hg38.chr15_KI270850v1_alt    216520 6 +    430880 ctttcA
s panTro5.chr15              18026225 6 -  83230942 ctttcA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       315134 6 +    378907 ctttcA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102170782 6 + 121039945 ccttcA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60384799 6 + 169600520 ctttcA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108383535 6 - 171882078 ctttcA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5375987 6 -   6271500 ctttcA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1834558 6 -   1987038 ctttcA
i cerAty1.NW_012002657v1    I 116 C 0
s chlSab2.chr29              21074446 6 -  24206276 ctttcA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       333606 6 -   1458659 ctttcA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        12017 6 -   1784207 ctttTG
i colAng1.NW_012117110v1    C 0 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T

a score=4975376.000000
s hg38.chr15_KI270850v1_alt    216526 953 +    430880 CTAGCCAAGCTCCAAAGTCACATTTCACTTAATTTTTATCCTGCCAAATTTGAAAGCCTTTTAACTTCGTGATTTTAGTGTAAACA-GGAGCAGGAGAAAATGTAATTATCTAAgtctcgctgtgtcacccagactggagtgcagtgccataatcatagctactgcagccttgaactcctcgcctcaagcaattttcccacctcagcctgccaagtagctaggactacagctgtgtgccaccacacccagctaatgttcaaaaatttttgtggagatgtgaattctttatgctgcccaggctagtcttgaactcctgacttcaagtaatcctcccacctcggcttgccaaagtgctgggattacaggtgtcagctactgctcctgacTGAGAGTTTAGTTTTGTTTGCTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGTTTTG-GGCTAGTGCTGAAGTATTACACTCACCATTCGAGGTCTACAGGACTTTTGGTTTAATATTGAACAGATGGAACTGTTTAGTTCTGCATCTTTGCAGGTATACAGAATGTGCCTACCAGGAATCTGCTTTATATCCATTGAAAGCA---AGAAATAATACAGTAAAACTTTGCCTGGCGAGAGGCTTTGAAAGAATGGCGTATTCTGGTTTAATTCTATTACTTTGG----AAGTATAAAGGTG-AAA-AAAATTCAAAACTTAAATTTCCTGTTGAATGCAATTTGAAAATATAGCCAATGATTCCACTTTTCTTCTCTAGTAAGGTTGGACATTCTGATCTACTTGGTGTTTTATTATAGAACTGCTAGTGTGCGTGAGTCTTACATTGTGAAGATACTTTTTTAAAACTTGAGATGTAAGAGGATGTAAACGGTTTTGTAGGAGATCAGGCTGGATGAGAATGGACACTTGTAAACATACTTTTTAGACTAAATCTCTGATTGCCGCTTGTTTT
s panTro5.chr15              18026231 953 -  83230942 CTAGCCAAGCTCCAAAGTCACATTTCACTTAATTTTTATCCTGCCAAATTTGAAAGCCTTTTAACTTCGTGATTTTAGTGTAAACA-GGAGCAGGAGAAAATGTAATTATCTAAgtctcgctctgtcacccagactggagtgcagtgccataatcatagctactgcagccttgaactcctcgcctcaagcaattttcccacctcaacctgccaagtagctaggactacagctgtgtgccaccacacccagctaatgtttaaaaatttttgtggagatgtgaattctctatgctgcccaggctagtcttgaactcctgacttcaagtaatcctcccacctcggcttgccaaagtgctgggattacaggtgtcagctactgctcctgaccGAGAGTTTAGTTTTGTTTGCTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGTTTTG-GGCTAGTGCTGAAGTATTACACTCACCACCCGAGGTCTACAGGACTTTTGGTTTAATATTGAACAGATGGAACTGTTTAGTTCTGCATCTTTGCAGGTATACAGAATGTGCCTACCAGGAATCTGCTTTATATCCATTGAAAGCA---AGAAATAATACAGTAAAACTTTGCCTGGCTTGAGGCTTTGAAAGAATGGCGTATTCTGGTTTAATTCTATTACTTTGG----AAGTATGAAGGTG-AAA-AAAATTCAAAACTTAAATTTCCTGTTGAATGCAATTTGAAAATATAGCCAATGATTCCACTTTTCTTCTCTAGTAAGGTTGGACATTCTGATCTACTTGGTGTTTTATTATAGAACTGCTAGTGTGCTTGAGTCTTACATTGTGAAGATACTTTTTTAAAACTTGAGATGTAAGAGGATGTAAATGGTTTTGTAGGAGATGAGGCTGGATGAGAACGGACACTTGTAAACATACTTTTTAGACTAAATCTCCGATTGCCGCTTGTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76614428 948 +  99763055 CTAGCCAAGCTCCAAAGTCACATTTCACTTAATTTTCATCCTGCCAAATTTGAAAACATTTTAACTTAGTGATTTTAGTGTAAACA-GGAGCAGGAGAGAGTG----TATTTAAgtctcgttctgtcacccaggctggagtacagtgccataatcatagctactgcaggcttaaactcctgggctcaagcaattttcccacctcagcatgccaaatagctaggactacaagtgtgcaccaccatgcccagctaattttaaattttttttgtggagatgtgaattcgctatgctgaccagcctggtcttgaactcctgacttcaagtaatcctcccaccttggcttgccaaagtgctgggattacaggtgtgaactactgctcccggcTGAGAGTTTAGTTTTGTTTGCTAGTGGCGATCTTGGTATCTTTTCATATTTGAGGCTTTGTTGCTAGTGCTGAAGTATTACACTCACCATCCAAGGTTTAAAGGACTTTCGTTTTAATATTGAACAGATGGAACTGTTTAGTTCTGCATCTTTGCATGTATACAAAATGTGCCTAGCAGGACTCTGCTTTATATCCTTTGAAAGCA---AGAAGTAATACAGTAAAACTTTGCCTGGCTAGAGGCTTTGAAAGAATGGAGTATTCTGATTTAATTCTATTAATTTGG----AAGTATGAAAGTC-AAA-ATAATTCAAAACTTATATTTCCTGTTCAATGCAATTTGAAAATAGAGTCAATGATTCCACTTTTCTTCTCTAGTAAGTTTGGACGTTCTGATCTACTTGGTGTTTTATTACAGAACTGCTAGTGTGCCTGAGACTTACATTGTGAAGATACTTTTTT-AAACTTGAGAGGTAAGAGGGTGTAAATGGTATTGTATGAGATCAGGCTGGATGAGAACTGACTCTTGTAAATATACTTTTTAGACTGAATTTCTGATTGCCATCTG-TTT
i panPan2.chr15             N 0 C 0
s gorGor5.CYUI01015946v1       315140 950 +    378907 CTAGCCAAGCTCCAAAGTCACGTTTCACTTAATTTTTATCCTGCCAAATTTGAAAGCCTTTTAACTTCGTGATTTTAGTGTAAACA-GGAGCAGCAGAAAATGTAATTATCTAAgtctcgctctgtcacccagactggagtgcagtgccataatcatagctactgcagtcttgaactcctggcctcaagcaattttcccacctcagcctgccaagtagctaggactacagctgtgtgccaccacacccagctaatgttcaaaaatttttgtggagatgtgaattctctatgctgcccaggctagtcttgaactcctgacttcaagtaatcctcccacctcggcttgccaaagtgctgggattacaggtgtcagctactgctcctgaccGAGAGTTTAGTTTTGTTTGCTAGTGGTGTTCTTGGCATCTTTTCATATTTGAGGTTTTG-GGCTAGTGCTGAAGTATTACACTCACCATCCGAGGTCTACAGGACTTTTGGTTTAATATTGAACAGATGGAACTGTTTAGTTCTGCATCTTTGCAGGTATACAGAATGTGCCTACCAGGAATCTGCTTTATATCCATTGAAAGCA---AGAAATAATACAGTAAAACTTTGCCTGGCTAGAGGCTTTGAAAGAATGGCGTATTCTGGTTTAATTCTATTACTTTGG----AAGTATGAAGGTG-AAA-AAAATTCAAAACTTAAATTTCCTGTTGAATGCAATTTGAAAATATGGCCAATGATTCCACTTTTCTTCTCTAGTAAGGTTGGACATTCTGATCTACTTGGTGTTTTATTATAGAACTGCTAGTGTGCTTGAGTCTTACATTGTGAAGATACTTTTTTAAAACTTGAGATGTAAGAGGATGTAAATGGTTTTGT---AGATCAGGCTGGATGAGAACGGACACTTGTAAACATACTTTTTAGACTAAATCTCTGATTGCCGCTTGTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102170788 952 + 121039945 CTAGCCAAGCTCCAAAGTAACATTTCACTTAATTTTTATCCTGCCAAATTTGAAAGCCTTTTAACTTAGTGATTTTAGTGTAAACA-GGAGCAGGAGAAAATGTAATTATCTAAgtcttgctctgtcacccaggctggagtgtagtgccataatcatagctactgcagccttgaattcctggcctcaagcaattttcccacctcagcctgccaagtagctaggactacagctg-gtgccaccacacccagctaatttttaaaaatgtttgtggagatgtgaattcgctctgctgcccaggctagtcttgaactcttgacttcaagtaatcctcccaccttggcttgccaaagtgctgggattacaggcgtgagctactgctcctggccGAGAGTTTAGTTTTGTTTGCTAGTGGTGTTCTTGGTATCTTCTCATATTTGAGGCTTTG-GGCCAGTGCTGAAGTATTACACTCACCATCTGAGGTTTACAGGACTTTTGGGTTAATATTGAACAGATGGAACTGTTTAGTTCTGCATCTTTGCAGGTATACAGAATGTGCCTACCAGGAACCTGCTTTATATCCATTGAAAGCA---AGAAATAATACAGTAAAACTTTGCCTGGCTAGAGGCTTTGAAAGAATGGCATATTCTGATTTAATTCTATTAACTTGG----AAGTATGAAGGTGAAAA-AAAATTCAAAACTTAAATTTCCTGTTGAATGCAATTTGAAAATATAGCCAACGATTCCACTTTTCTTCTCTAGTAAGGTTGGACATTCTGATTTACTTGGTGTTTTATTATAGAACTGCTAGTAAGCCTGAGTCTTACATTGTGAAGATACTTTTTTAAAACTTGAGATGTAAGAGGATGTAAATGGTTTTGTAGGAGATCAGGCTGGATGAGAACGGACACTTGTAAACATACTTTTTAGACTAAATCTCTGATTGCCACTTG-TTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60384805 949 + 169600520 CTAGCCAAGCTCCAGAGTCACATTTCACTTAATTTTTAT-CTGCCAAATTTGAAAGCATTTTAACTTAGTGATTTTAGTGTAAACA-GGAGCAGGAGAGAATG----TATTTAAgtctctctctgccactcaggctggagtgtggtgccataatcatagctactgcagcctcgaactcctgggctcaagcaattttcccacctcagcct-ccaagtagctaggactacaggtgtgtgccaccacgcccagctaatttttaaaattttttgtggagatgtgaattcgctatgctgcccaggctagtcttgaactcctgacttcaagtaattctcctaccttggcttgccaaagtgctgggattacagctatgaactactgctcctggcTGAGGGTTTAGTTTTGTTTGCTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGCTTTGGTGCTAGTGTTGAAGTATTTCACTCACCATCTGAGGTTTACAGGACTTTTGTTTTAAAATTGAACAGATGGAACTGTTTAGTTCTGCATCTTCGCAGGTACACAAAATGTGCCTACTGGGAATCTGCTTCATATCCAAATAAATAATACAGAAATAATACACCAAAACTTTGCCT-------GGCTTTGAAAGAATGGTGTATTCTGATTTAATTCTATGAACTTGGTGAAAAAAATGAAGGTG-AAAAAAATTTCAAAACTTAAACTTCCTGTTGAATGCAATTTGAAAATATTGCCAGTGATTCCACTTTTCTTCTCTAGTAAGTTTGGACATTCTGATCTACTTGGTGTTTTATTATAGAACTGCTAGTGTGCCTGAGACTTACATTGTGAAGACACTTTTTAAAAACTTGAGATGTAAGAGGCTGTAAATGGTTTTGTATGAGATCAGATTGGATGAGAACTGATAATTGTAAATATACATTTTAGACTTAATCTCTGCTTGTCACTTGTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108383541 946 - 171882078 CTAGCCAAGCTCCAAAGTCACTTTTCACTTAATTTTTATCCTGCCAAATTTGAAAGCCTTTTAACTGAGGGATTTCAGTGTAAACA-GGAGCAGGAGAAAATGTAATTATCTAAgtttcactctgtcacccaggctggagtgcagtgccataatcatagctactgcagcctcgaactcctgcgctcaagcaattttcccacctcagcctgcaaagtagctaggactacagctgtgtgccaccaggcccagctaatttttaaaattttttgtggagacgtgaatttgctatgctgcccaggttaatcttgaactcctgacttcaagtaatcctcccaccttagtttgccaaagtgctgggattacaggcatgaactactgctcctagtcGAGAGTTTAGTTTTGATTGCTAGTGGCGTTCTTGGTATC-TTTCATATTTGAGGCTTTGGGGCTAATGCTGAAGTATTGCACTCACCATCTGAGGTTTACAGGACTTTTGTTTCAATGTTGAACAGGTGGAACTGTTTAGTTCTGCATCTTTGCAGGTATACAAAATGTGCCTACCAGGAATCTGCTTTATATCCATGGAAAGCA---AGAAATAATATGGTAAAACTTTGCCTGGCTAGAGGCTTTGAAAGAATGGCGTATTCTGGTTTAATTCTATTAAATTGG----AAGTATGAAGGTG-AAA--------AAAACTCAAATTTCCTGTTGAATGCAATTTGGAAATATAACCAGTGATTCCACTTTTCTTCTCTAGTAAGGTTGGACATTCCAATCTACTTGGTGTTTTATGATAGAACTGCTAGTGTGCCTGAGTCTCACATTGTGAAGATACATTTTTCAAACTTGAGGTGTAAGAGGACGTAAATGGTTTTGTATGAGATCAGGCTGGATGAGAACTGACACTTGTAAATATATATTTTAGACTAAATCTCTGATTGCCACTTGTTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5375993 948 -   6271500 CTAGCCAAGCTCCAAAGTCACATTTCACTTAATTTTTATCCTACCAAATTTGAAAGCCTTTTAACTGAGTGATTTTAGTGTAAACAGGGAGCAGGAGAAAATGTAATTATCTAAgtttcactctgacacccaggctggagtacagtgccgtaatcatagctactgcagcctcgaactcctgggctcaagcaattttcccacctcagcctgccaagtagctaggactacagctgtgtgccaccacggccagataatttttaaatttttttgtggagacgtcaattcgctatgctgcccaggctaatcttgaattcctgacttcaagtaatcctcccaccttggtttgccaaaatgctgggattacaggcatgaactactgctcctggTGGAGAGTTTAGTTTTGATTGGTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGCTTTGGGGCTAATGCTGAAGTATTGCACTCACCATTCGAGGTTTACAGGACTTTTGTTTCAATGTTGAACAGATGGAACTTTTTGGTTCTGCATCTTTGCAGGTATACAAAATGTGCCTACCAGGAATCTGCTTTATATTCATGGAAAGCA---AGAAATAATACAGTAAAACTTTGCCTGGCTAGAGGCTTTGAAAGAATGGTGTATTCTGGTTTAATTCTATTAAATTGG----AAGTATGAAGGTG-AAA--------AAAACTCAAATTTCCTGTTGAATGCAATTTGGAAATATAGCCAGTGATTCCACTCTTCTTCTCTAGTAAGGTTGGACATTCCAATCTACTTGGTGTTTTATGATAGAACTGCTAGTGTGCCTGAGTCTCACATTGTGAAGATACATTTTTCAAACTTGAGGTGTAAGAGGATGTAAATGGTTTTGTATGAGATCAGGCTGGATGAGAACTGACACTTGTAAATATATATTTTAGACTAAATCTCTGATTGCCACTTGTTTT
i macNem1.NW_012011056v1    C 0 I 6
s cerAty1.NW_012002657v1      1834564 950 -   1987038 CTAGCCAAGCTCCAGAGTCACATTTCACTTAATTTTTAT-CTGCCAAATTTGAAAACATTTTAACTTAGTGATTTTAGTGTAAACA-GGAGCAGGAGAGAATG----TATTTAAgtctcgctctgccactcaggatggagtgcggtgccataatcatagctactgcagcctcgaactcctgggctcaagcaattttcccacctcaacctgccaagtagctaggactacaggtgtgtgccaccacgcccagctaatttttaaaattttttgtggagatgtgaattcgctatgctgcccaggctagtcttgaactcctgacttcaagtaattctcccaccttggcttgccaaagtgctgggattacagctatgaactactgctcctggccGAGGGTTTAGTTTTGTTTGCTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGCTTTGGTGCTAGTGTTGAAGTATTTCACTCACCATCTGAGGTTTACAGGACTTTTGTTTTAAAATTGAACAGATGGAACTGTTTAGTTCTGCATCTTCGCAGGTACACAAAATGTGCCTACTGGGAATCTGCTTCATATCCAAATAAATAATACAGAAATAATACACCAAAACTTTGCCT-------GGCTTTGAAAGAATGGTGTATTCTGGTTTAATTCTATGAACTTGGTGAAAAAAATGAAGGTG-AAAAAAATTTCAAAACTTAAACTTCCTGTTGAATGCAATTTGAAAATATTGCCAGTGATTCCACTTTTCTTCTCTAGTAAGTTTGGGCATTCTGATCTACTTGGTGTTTTATTATAGAACTGCTAGTGTGCCTGAGACTTACATTGTGAAGACACTTTTTAAAAACTTGAGATGTAAGAGGCTGTAAATGGTTTTGTATGAGATCAGGTTGGATGAGAACTGATAATTGTAAATATACATTTTAGACTTAATCTCTGCTTGCCACTTGTTTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21074452 943 -  24206276 CTAGCCAAGCTCCAAAGTCACTTTTCACTTAATTTTTATCCTGCCAAATTTGAAAGCCTTTTAACTGAGTGATTTCAGTGTAAACA-GGAGCAGGAGAAAATGTAATTATCTAAgtttcgctctgtcacccaggctggagtgcagtgccataatcatagctactgcagcctcgaactcctgcactcaagcaattttcccacctcagcctgcaaagtagctaggactacagctgtgtgccaccacgcccagctaa-ttttaaaattttttgtggagacgtgaattcgctatgctgcccaggttaatcttgaactcctgacttcaagtaatcctcccaccttagtttgccaaagtgctgggattacaggcatgaactactactccTAGTTGAGAGTTTAGTTTTGATTGCTAGTGGCGTTCTTGGTATCTTTTCATATTTGAGGCTTTGGGGCTAATGCTGAAGTATTGCACTCACCATCCGAGGTTTACAGGACTTTTGTTTCAATGCTGAACAGATGGAACTGTTTAGTCCTGCATCTTTGCAGGTATACAAAATGTGCCTACCAGGAATCTGCTTTATATCCATGGAAAGCA---AGAAATAATACAGTAAAAC--TGCCTGGCTAGAGGCTTTGAAAGAATGGTGTATTCTGGTTTAATTCTATTAAATTGG----CAGTATGAAGGTG-AAA--------AAAACTCAAATTTCTTGTTGAATGCAATTTGGAAATATAGCCAGTGATTCCACTCTTCTTCTCTAGTAAGGTTGGACATTCCAATCTACTTGTTGTTTTATGATAGAACTGCTAGTGTGCCTGAGTCTCACATTGTGAAGATACATTTTTCAAACTTGAGGTGTAAGAGTACGTAAATGGTTTTGTATGAGATCAGGCTGGATGAGAACTGACACTTGTAAATATATATTTTAGACTAAATCTCTGATTGCCACTTGTTT-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       333612 946 -   1458659 CTAGCCAAGCTCCAAAGTCACTTTTCACTTAATTTTTATCCTGCCAAATTTGAAAGCCTTTTAACTGAGTGATTTCAGTGTAAACA-GGAGCAGAAGAAAATGTAATTATCTAAgtttcgctctgtcacccaggctggagtgcagtgccataatcatagctactgcagcctcgaactcctgcgctcaagcaattttcccacctcagcctgccaagtagctaggacaacagctgtgtgccaccaggcccagctaatttttaaaattttttgtggagacgtgaattcgctatgctgcccaggttaatcttgaactcctgacttcaggtaatcctcccaccttagtttgccaaagtgctgggattacaggcatgaactactgcccctagtcGAGAGTTTAGTTTTGATTGCTAGTGGCGTTCTTGGTATCTTTTCATATTTGAAGCTTTGGGGCTAAAGCTGAAGTATTGCGCTCACCATCCGAGGTTTACAGGACTTTTGTTTCAATGTTGAACAGATGGAACTGTTTAGTCCTGCATCTTTGCAGGTATACAAAATGTGCCTACCAGGAATCTGCTTTATATCCATGGAAAGCA---AGAAATAATACAGTAAAACTTTGCCTGGCTAGAGGCTTTGAAAGAATGGCGTATTCTGGTTTAATTCTATTAAATTGG----AAGTATGAAGGTG-GAA--------AAAACTCAAATTTCCTGTTGAATACAATTTGGAAATATAGCCAGTGATTCCACTTTTCTTCTCTAGTAAGGTTGGATATTCCAATCTACTTGGTGTTTTATGATAGAACTGCTAGTGTGCCTGAGTCTCACATTGTGAAGATACATTTTTCAAACTTGAGGTGTAAGAGGACGTAAATGGTTTTGTATGAGATCAGGCTGGATGAGAAGTGACACTTGTAAATATATATTTTAGACTAAATCTCTGATTGCCACTTGTTT-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        12023 953 -   1784207 CTAGCCAAGCTCCAAAGTCACATTTCACTAAATTTTTATCCTGCCAAATTTGGAAGCCTTTTACCTTAGTGATTTTAGTG--ATTT-AGAGCAGGAGAAAATGTAATTATCCAAgtttcgctctgtcacccaggctggagtgcagtgccataatcatagctactgcagcctcgaactcctgggctcaagcaattttcccacctcagcctcccaagtagctaggactacagctgtgtgccaccatgcccagctaatttttaaaattttttgtggagatgtgaattcgctatgctgcccagccttctcttgaactcctgacttcaagtaatcctcccaccttggcttgtcaaagtgctgggattacaggcatgaactactgctcctggccAAGAGTTTAGTTTCTATTGCTAGTGATGTTCTTGGTATCTTTTCATATTTGAGGCTTTGGTGCTAGTGCTGAAGTATTGCACTCACCATCCAAGGTTTACAGGACTTTTGTTTTAATATTGAACAGATGGAACTGTTTCATTCTGCATCTTTGCAGGTATACAAAATGTGCCTACCAGGAGTCTGCTTTATATCCATTGATAGCA---AGAAATAATACAGCAAAACTTTGCCTGGCTAGAGGCTTTGAAAGAATGGCATATTCTGGTTTAATTCTATTAACTTGG----AAGTATGAAGGTG-ACAAAAAATTCAAAACTTAAATTTCCTGTGGAATGCAATTTGAAAATATAGCCAATGATTCCACTTTTCTTCTCTAGTAAGGTTGGACATTCCGATCTACTTGGTGTTTTATTATAGAACTGCTAGTGTGCCTGAGTCTTGCATTGTGAAGATACTTTTTTAAAACTTGAGATGTAAGAGGGTGTAAATGGTTTTGTATGAGATAAGACTGGATGAGAACTGCCACTTGTAAATATACGTTTTAGACTAAATCTCTGATTGCCACTTGTTTT
i colAng1.NW_012117110v1    C 0 I 1
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T

a score=23497.000000
s hg38.chr15_KI270850v1_alt    217479 8 +    430880 TCTTATGG
s panTro5.chr15              18027184 8 -  83230942 TCTTATGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76615376 8 +  99763055 TCTTATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       316090 8 +    378907 TCTTATGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102171740 8 + 121039945 TCTTATTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60385754 7 + 169600520 -CTTACTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108384487 7 - 171882078 -CTAATTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1835514 7 -   1987038 -CTTACTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21075395 8 -  24206276 TCTAATTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       334558 8 -   1458659 TCTAATTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        12977 8 -   1784207 TCTTATTG
i colAng1.NW_012117110v1    I 1 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e macNem1.NW_012011056v1      5376941 6 -   6271500 I

a score=1086944.000000
s hg38.chr15_KI270850v1_alt    217487 204 +    430880 AACTCATACAAATAAAACACATTGGATGGAGGGTGCGAGTAGGAAGGAGATTCTGGTCTTTTAATTGCATGTCATTGTTTCATAACAAGGCAGAACATATGGTAACCCTGGCTTTGGACCTACAGAAGGAAACACATTTTTCTACCTGCTGTATGCCAGAGGTTCTTGAAcacttggagggattactgcagcacagattgctga
s panTro5.chr15              18027192 204 -  83230942 AACTCATACAAATAAAACACATTGGATGGAGGGTGCGAGTAGGAAGGAGATTCTTGTCTTTTAATTGCATGTCATTGTTTCATAACAAGGCAGAACATATGGTAACCCTGGCTTTGGACGTACAGAAGGAAACACATTTTACTACCTGCTGTATGCCAGAGGTTCTTGAAcacttggagggattactgcagcacagattgctga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76615384 204 +  99763055 AACTCATAAAAATAAAACATATTGGATGGAGGGTGGGGGTAGGAAAGAGATTTATGTCTTTTAATTGCATGTCATTGTTTCATATCAAGACAGAACATATGGTATCCCTGGCTTTGGACCTACAGAAGGAAACACATTTTTCTACCTGCTGTATGCCAGAGGTTCTTGAAcacctgcagggatgaccacagcacagattgctga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       316098 204 +    378907 AACTCATACAAATAAAACACATTGGATGGAGGGTGCGAGTAGGAAGGAGATTCTTGTCTTTTAATTGCATGTCATTGTTTCATAACAAGGCAGAACATATGGTAACCCTGGCTTTGGACCTACAGAAGGAAACACATTTTACTACCTGCTGTATGCCAGAGGTTCTTGAAcacttggagggatgactgcagcacagattgctga
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102171748 204 + 121039945 AACTCATAAAAATAAAACACATCAGATGGAGGGTGGGAGTAGGAAGGAGATTTATGTCTTTTAATTGCATGTCATTGTTTCATAACAAGGCAGAACATATGGTAACCCTGGCTTTGGACCTACAGAAGGAAACACATTTTACTACCTGCTGTATGCCAAAGGTTCTTGAAcacctgcagggattactgcagcacagattgctga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60385761 201 + 169600520 AACTCATAAAAATAAAACACACTGGATGGAGGGT--GAGTAGGAAGGAGATTTATGGGTTTTAATTGCATGTCATTGTTTCATATCAAGACAGAACATATGGTATCCCTGGCTTTGGATCTACAGAAGGAAACACATTTTTCTACCTGCTGTATGCCAGAGGTTCTTGAGcacctggagggattactgcag-acagattgctga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108384494 203 - 171882078 AACTCATAAAAATAAAACACGTTGGATGGAGGGTGGGAGTAGGAAGGAGATTTATGTCTTTTAATTGCATGTCATTGTTGTATAACAAGGCAGAACATATGGTATCCCTGGC-TTGGACCTACAGAAGGAAACATATTTTTCTGCCTGCCGTATGCCAGAGGTTCTTGAAcacctggagggactactgcagcacagactgctga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5376947 203 -   6271500 AACTCATAAAAATAAAACACGTTGGATGGAGGGTGGGAGTAGGAAGGAGATTTATGTCTTTTAATTGCATGTCATTGTTGCATAACAAGGCAAAACATATGGTATCCCTGGC-TTGGACCTACAGAAGGAAACATATTTTTCTACCTGCTGTATGCCAGAGGTTCTTGAAcacctggagggactactgcagcacagactgctga
i macNem1.NW_012011056v1    I 6 C 0
s cerAty1.NW_012002657v1      1835521 201 -   1987038 AACTCATAAAAATAAAACACACTGGATGGAGGGT--GAGTAGGAAGGAGATTTATGGGTTTTAATTGCATGTCATTGTTTCATATCAAGATAGAACATATGGTATCCCTGGCTTTGGATCTACAGAAGGAAACACATTTTTCTACCTGCTGTATGCCAGAGGTTCTTGAAcacctggagggattactgcag-acagattgctga
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21075403 203 -  24206276 AACTCATAAAAATAAAACACGTTGGATGGAGGGTGGGAGTAGGAAGGAGATTTATGTCTTTTAATTGCATGTCATTGTTGTATAACAAGGCAGAACACATGGTATCCCTGGC-TTGGACCTACAGAAGGAAACATATTTTTCTGCCTGCTGTATGCCAGAGGTTCTTGAAcacctggagggactactgcagcacagacttctga
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       334566 203 -   1458659 TACTCATAAAAATAAAACACATTGGATGGAGGGTGGGAGTAGGAAGGAGATTTATGTCTTTTAATTGCATGTCATTGTTGTATAACAAGGCAGAACATATGGTATCCTTGGC-TTGGACTTTCAGAAGGAAACATATTTTTCTGCCTGCCGTATGCCAGAGGTTCTTGAACACCTGGAGGGACTACTGCAGCACAGACTGCTGA
i manLeu1.NW_012105520v1    C 0 M 978
s colAng1.NW_012117110v1        12985 204 -   1784207 AACTTATAAAAATAAGACATATTAGATGGAGGGTGGGAGGAGGAAGGAGATTTATGTCTTTTAATTGCATGTCATTGTTTCATATCAAGACAGAACATATGGTATCCCTGGCTTTGGACCTACAGAAGGAAACACATGTTACTACCTGCTGTATGCCAGAGGTTCTTGAAcacctggaggcattaccgcagcatagattgctga
i colAng1.NW_012117110v1    C 0 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T

a score=625858.000000
s hg38.chr15_KI270850v1_alt    217691 150 +    430880 accctactccagagtttc-tgattcaccaggtccagggtggggcctgagaatttgcacttataaaaaggtctcaggtgctgctggtgctgctagtccatagactaca-tt-ttgagaaccactCTTGTCTATTAAGTGTAAATTGTAGAACTC
s panTro5.chr15              18027396 149 -  83230942 accctactccaggg-ttc-tgattcaccaggtccagggtggggcctgagagtttgcacttataaaaaggtctcaggtgctgctggtgctgctagtccatagactaca-tt-ttgagaaccactCTTGTCTATTAAGTGTAAATTGTAGAACTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76615588 152 +  99763055 gccctactccagagtttcttgattcaccaggtccagggtggggcctgagaatttgcacttataaaaagttctcaggttctgctggtgctgctagtccagagactacattt-ttgagaacccctCTTGTCTACTAACTGTGAATTGTAGAACTC
i panPan2.chr15             C 0 I 5983
s gorGor5.CYUI01015946v1       316302 150 +    378907 gccctactccagagtttc-tgattcaccaggtccagggtggggcctgagaatttgcacttataaaaaggtctcaggtgctgctggagctgctagtccatagactaca-tt-ttgagaaccactCTTGTCTATTAAGTGTAAATTGTAGAACTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102171952 150 + 121039945 accctaatctagagtttc-tgattcaccaggtccagggtgggacctgagaattcgtacttataaaaaggtctcaggtgctgctggtgctgctagtccatagactaca-tt-ttgaggaccactCTTGTCTATTAACTGTAAATTGTAGAACTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60385962 148 + 169600520 gccctacgccagagtttc-tgattcaccaggtccagggtgggacctgagaatttgtactttt---aaggtctcaggtgctactagtgctgctagtccagagactaca-ttactgagaaccactCTTGTCTATTAACTGTAAATCATAGAACTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108384697 150 - 171882078 gccctactccagagtttc-cgattcaccaggcccagggtgggacctgagaatgtgcacttataaaaagatctcaggtgctgctggtgctgttagtccatagactaca-tt-ttgaaaaccactCTTGTCTATTAACTGTAAACTGTAGAATTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5377150 150 -   6271500 gccctactccagagtttc-cgattcaccaggcccaggatgggacctgagaatttgcacttataaaaagatttcaggtgttgctggtgctgctagtctatagactaca-tt-ttgaaaaccactCTTGTCTATTAACTGTAGACTGTAGAATTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1835722 148 -   1987038 gccctacgccagagtttc-tgattcaccaggtccagggtgggacctgagaatttgtactttt---aaggtctcaggtgctactggtgctgctagtccagagactaca-ttactgagaaccactCTTGTCTATTAACTGTAAATTATAGGACTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21075606 148 -  24206276 gccctactccagagtttc-cgattcaccaggtccagggtgggacctgagaatttgcacttatgaaaagatctcaggtgctgctggtgctgttagtccatagactaca-tt-ttgaaaaccactC--GTCTATTAACTGTAAATTGTAGAATTC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        13189 135 -   1784207 ---------------gtt-cgattcaccaggtccagggtggagcctgagaatttgcacttataaaaaggtctcaggtgctgccattgttcctagtccatagactaca-tt-ttgagaaccactCTTGTCTATTAACTGTAAATTGTAGAACTC
i colAng1.NW_012117110v1    C 0 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e manLeu1.NW_012105520v1       334769 978 -   1458659 M

a score=232219.000000
s hg38.chr15_KI270850v1_alt    217841 51 +    430880 TAGAAAAAAGCTTAGTTCAGTCTGGGATAAGAAGCACACAGGTTATGGAGA
s panTro5.chr15              18027545 51 -  83230942 TAGAAAAAAGCTTAGTTCGGTCTGGGATAAGAAGCACACAGGTTATGGAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76621723 51 +  99763055 TAGAAAAAAGCTTAGTTTGGTGTGGGAAAAGAAGCTCACAGGTTATGGAGC
i panPan2.chr15             I 5983 C 0
s gorGor5.CYUI01015946v1       316452 51 +    378907 TAGAAAAAAGCTTAGTTCGGTCTGAGATAAGAAGCACACAGGTTATGGAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102172102 51 + 121039945 TAGAAAAAAGCTTAGTTTGGTCTGGGATAGGAAGCACACAGGTTATGAAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60386110 51 + 169600520 TAGAAAAAAGCTTAGTTTGGTGTGGGATGAGAAGCACACGGGTTATGGAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108384847 51 - 171882078 TAGAAAAAAACTTAGTTTGGTCTGGGATAAGAAGCACACAGGTTATGGAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5377300 51 -   6271500 TAGAAAAAAACTTAGTTTGGTCTGGGATAAGAAGCACACAGGTTATGGAGA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1835870 51 -   1987038 TAGAAAAAAGCTTAGTTTGGTGTCGGATGAGAAGCACACGGGTTATGGAGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21075754 51 -  24206276 TAGAAAAAAACGTAGTTTGGTCTGGGATAAGAAGCACACAGGTTATGGAGA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        13324 51 -   1784207 TAGAAAAAAGTTTAGTTTGGTCTGGGATAAGAAGCACACAGGTTATGGAGA
i colAng1.NW_012117110v1    C 0 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e manLeu1.NW_012105520v1       334769 978 -   1458659 M

a score=861881.000000
s hg38.chr15_KI270850v1_alt    217892 165 +    430880 AAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGATTTCAGGTAACAAGCAGTACACAGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAGGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCCTAGAGAGGCCTGGTGAT
s panTro5.chr15              18027596 164 -  83230942 AAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGATTTCAGGTAACAAGCAGTACACAGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAGGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCTTAGAGAGG-CTGGTGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76621774 165 +  99763055 AAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGAATTCAAGTAACAAGCAATACACAGTGACGTAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAAGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCTTAGAGAGGCCAGGTGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       316503 165 +    378907 AAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGATTTCAGGTAACAAGCAGTACACAGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCACAGCCAGGTATCAAGTGAGGAATTCAGTTTCATTTGCAAGGCTTAGAGAGGCCTGGTGAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102172153 165 + 121039945 AAATCATGAAAGATTCAACCCTTGATGCCAGCCTAGTGTGGATTTCAGATAATAAGCAGTACACAGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAGGTATCAAGTGAGAAATTCCATTTCATTTGCAAGGCTTAGAGAGGCCAGGTGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60386161 165 + 169600520 AAATCATGAAAGATTCAACCCTTGATCCCAGCCTATTATGGAATTCAGGTAACAAGCAATACACAGTGACATAACACAGTTCTTAGTTTTCATGGTTGCAAGTCACAGCCAAGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCTTAGAGAGGCCAGGTGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108384898 160 - 171882078 AAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGAATTCAGGTAACAAGCAGTACACAGTG-----ACATAATTCTCGGTTTTCATGATTGCAAATCATAGCCAAGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCTTAGAGAGGTCAGGTGAT
i macFas5.chr7              C 0 n 0
s macNem1.NW_012011056v1      5377351 165 -   6271500 AAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGAATTCAGGTAACAAGCAGTACACAGTGACATAACATAATTCTCGGTTTTCATGATTGCAAATCATAGCCAAGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCTTAGAGAGGTCAGGTGAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1835921 165 -   1987038 AAATCATGAAAGAGTCAACCCTTGATCCCAGCCTATTATGGAATTCAGGTAACAAGCAATACACAGTGACATAACACAGTTCTTAGTTTTCATGGTTGCAAGTCACAGCCAAGTATCAATTGAGAAATTCAGTTTCATTTGCAAGGCTTAGAGAGGCCAGGTGAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21075805 153 -  24206276 AAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGAATTCAGGTAACAAGCAGTG------------ACATAATTCTTGGTTTTCATGATTGCAAATCATAGCCAAGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCTTAGAGAGGTCAGGTGAT
i chlSab2.chr29             C 0 n 0
s colAng1.NW_012117110v1        13375 165 -   1784207 AAATCATGAAAGATTCAACTCTTGAACACAGCCTAGTGTGGAATTCAGGTAATAAGCAATACACAGTGACATAACACAATTCTTGGTTTTCATGATTGCCAGTCATAGCCAAGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCATAGAGAGGCCAGGTGAT
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108            5008883 160 -  54856640 AAATCAGAAAAGATTCAACCCTTTATAGCAGCCTACTGTGGAATTCAGGTAACAAGCAGTACACAGTGACAAAACAGAATCCTTGGTTTTTATGATTGCAAGTCATAGCCAAGTATCAACTGAGAAATT-AGATTTATTTGCAAGGCTT----AGGCCAGTTGAT
i saiBol1.JH378108          N 0 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e manLeu1.NW_012105520v1       334769 978 -   1458659 M

a score=317750.000000
s hg38.chr15_KI270850v1_alt    218057 76 +    430880 TCTAGAAAAATGGGCCTTGTATTTGTTTTAAACCAGTAAAGAGCTTTAAGTGCTTATTAAATTGTAAGTTTTGTGT
s panTro5.chr15              18027760 76 -  83230942 TCTAGAAAAATGGGCCTTGTATTTGTTTTAAACCAGTAAAGAGCTTTAAGTGCTTATTAAATTGGAAGTTTTGTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76621939 76 +  99763055 TCTAGAAAAATAGGCCTTGTATATGCTTTAAACCAGTGAAGAGCTTTGAGTGCTTATTAAATTGAAAGCTTTGTGt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       316668 76 +    378907 TCTAGAAAAATGGGCCTTGTATTTGTTTTAAACCAGTAAAGAGCTTTAAGTGCTTATTAAATTGGAAGTTTTGTGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102172318 76 + 121039945 TCTAGAAAAATGGGCCTTGTGTTTGTTTTAAACCAGTAAAGAGCTTTAAGTGCTTATTAAATTGAAAGCTTTGTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60386326 76 + 169600520 TCTAGAAAAATGGGCCTTGTGTTCATTTTAAATTGGTAAAGAGCTTTAAGTGCTCATTAAGTTGAAAGCTTTCTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65321243 76 + 171882078 TCTAGAATACTGGGACTTGTATTTCTCTTAAACAAGTAGAGAGTTTTAAGTGCTTATTAAATTGAAAGCTTTGTGT
i macFas5.chr7              I 77144 C 0
s macNem1.NW_012011056v1      5377516 76 -   6271500 TCTAGAATACTGGGACTTATATTTCTCTTAAACAAGTAGAGAGTTTTAAGTGCTTATTAAATTGAAAGCTTTGTGT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1836086 76 -   1987038 TCTAGAAAAATGGGCCTTGTATTCATTTTAAATTGGTAAAGAGCTTTAAGTGCTCATTAAGTTGAAAGCtttctgt
i cerAty1.NW_012002657v1    C 0 C 0
s colAng1.NW_012117110v1        13540 76 -   1784207 TCTAGAAAAATGGGTCTTGTATTTGTTTTAAACCAGTAAAGAGCTTTAAGTGCTTATTAAATTGAAAGCTTTGTGT
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108            5009043 76 -  54856640 TCTAGAAAAATGGGCCTTGTATTTGTTTCAAGCCAGTAAAGAGCTTTGAGTGTTTATTAAATTGAAATCACTGTGt
i saiBol1.JH378108          C 0 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e manLeu1.NW_012105520v1       334769 978 -   1458659 M
e chlSab2.chr29              21075958  0 -  24206276 I

a score=1654630.000000
s hg38.chr15_KI270850v1_alt    218133 545 +    430880 TCCTAC----------------------TTATTTTGTA-----------------------------------------------------------tcttattttgtt---ttattttatttc-ttttgagatggagtcttgctctgtcacccaggctggagtgcagtggcatgagcttggctcactgcaacctccatctcctgggttcaagtgattctcctgcctc-agcctcccaaatagctgggattacaagcacccaccaccacacctggttggtttttgtatttttagtagagacagggtttcttcatgttggccaggctggtctcgaactcctgacctcaggtcatccacccacctcggcctcccaaagtgatggcattacaggggtgagccaccgcacctggccCAAAAGCTTTGTGTTTTTAAAGATATTAGACATGTTTCTTGTTTTTAAA--AGAAATCTTAACAATAATGTAGGAGAATAAGACAAACATTTTTCCAAAAAAGAGAAATTGTTGTGATTATTCTCTGTTATTGGAATGTCGGATACTATAGTCAGCTTCATTAATCATCAAGAATGCTATGGATTTTCCATTTTTATAGGGTCTATATCTCAGTTAAGGTA
s panTro5.chr15              18027836 546 -  83230942 TCCTAC----------------------TTATTTTGTA-----------------------------------------------------------TCttattttatt---ttattttattttattttgagatggagtcttgctgtgtcgcccaggctggactgcagtggcatgagcttggctcactgcaacctccatctcctgggttcaagtgattctcctgcctc-agcctcccaaatagctgggattacaggcacccaccaccacacctggctagtttttgtatttttagtagagacagggtttcttcatgttggccaggctggtctcgaattcctgacctcaggcaatccacccacctcggcctcccaaagtgatggcattacaggcgtgagccaccgcacccggccCAAAAGCTTTGTGTTTTTAAAGATATTAGACATGTTTCTTGTTTTTAAA--AGAAATCTTAACAATAATGTACGAGAATAAGACAAACATTTTTCCAAAAAAGAGAAATCCTTGTGATTATTTTCTGTTATTGGAATGTCGGATACTATAGTCGGCTTCATTAATCATCAAGAATGCTATGGATTTTCCATTTTTATAGGATCTATATCTCAGTTAAGGTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76622015 518 +  99763055 ttttat----------------------taattt-----------------------------------------------------------------ttactttttt---tttttttgt---------agatggagtctcagtctgtcacccaggctgcagtgcagtggtgtgaccttggctcactgcaa-cttcggcttccaggttcaagtgattctcctgcttc-agtctcccgagtagctgggattgcaggtacccatgaccacacctggctagtttttgtatttttagtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacctaaggtgatccacccgcctaggcctcccaaagtgctgggattatgggagtgagccactgcacccggcACAAAAGCTTTGTGTTTTTAAAGATATTAGACATGT---TTATTTTTTAA--AAAAATCTT---AATAATGCAGGAGATTAAGAGAAAC-TTTTTCCAAAAAAAAGAATTCATTGTGATTATC-----TTATTGGAATGTTGGATAATATAGTCCACTTCATTAAACATCAAGCATGCTATGGATTTTCCATTTTTATAGGAGTTGTATCTCAATTGAGGTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       316744 535 +    378907 TCCTAC----------------------TTATTTTGTA-----------------------------------------------------------TCTTAttttatt---ttattttattta-ttttgagatggagtcttgctgtgtcacccaggctggagtgcagtggcatgagcttggctcactgcaacctccatctcctgggttcaagtgattctcctgcctc-agcctcccaaatagctgggattacaggcacccaccaccacacctggctagtttttgtatttttagtagagacagggtttcttcatgttggccaggctggtctcgaactcctgacctcaggcgatccgcccacctcggcctcccaaagtgatggcattacgggggtgagccactgcacccggccCAAAAGCTTTGTGTTTTTAAAGGTGTTAGACATGTTTCTTGTTTTTAAA--AGAAATCTTAACAATAATATAGA----------CAACATTTTTCCAAAAAAGAGAAATCATTGTGATTATTTTCTGTTATTGGAATGTCGGATACTATAGTTGGCTTCATTAATCATCAAGCATGCTATGGATTTTCCATTTTTATAGGATCTATATCTCAGTTAAGGTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102172394 515 + 121039945 TCTTAC----------------------T------------------------------------------------------------------------------TT---GTAttttatttc-ttttgagatggagtcttgctctgccacccaggctggagtgcagtggtgtgagcttggctcactgcaacctctgtctcctgggttcaagtgattctcctgcctcaagcctcccaaatagctgggattacaggcacccaccaccacgcctggctagcttttgtatttttagtagagacagggtttcttcatgttggccaggctggtctcaaactcctgacctcaggcaatccgcccacctcggccttccaaagtgatggcattacaggcgtgagccactccacccggccCAAAAGCTTTGTGTTTTTAAAGATACAAGAAA--------GTTTTTAAA--AGAAATCTTAACAATAATGTAGGGGAATAAGACAAACATCTTTCCAAAAAAGAGAAATCATTGTGCTTATTTTGTCTTATTGTGATGTTGGATACTATATTCGGCTTCATTAATCATCAAGCATGCTATGGATTTTCCATTTTTATAGCATC----TCCCAGTTAAGGTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60386402 552 + 169600520 TCTTACT---------ttttattttattttattttatt-------------------------------------------------------------ttattttatt---ttattttatttc-ttttgagatggagtcttgctctgtcgcccaggctggagtgcagtggcgtgagcttggctcactgcaaactccatcttctgggttcaagtgattctcctgcctc-agcctcccaaaaagctggaattacaggcacccactaccacacctggctaatttttgtatttttagtagaagtggggtttcttcatgttggctaggctggtcttgaactcctgacctgagacaatccacccacctcggcctcccaaagtgatgggattacaggtgtgagccactgcactgggccCAAAAGCTTTGTGTTTTTAAAGATATTAGACATGTTTCTTATTTTTTA---AAAAATCTT---AATAATGTAGGAGAATAAGAGAAACGTTTTTTCAAAAAAGAGAAATCATTGTGATTATTTTATCTTATTAGAATGTTGGATATTATAGTCTGCTTCATTAATCATCAAGCATGCTATGGATTTTCCATTTTTATAGGGTCGGTATCTCAGTTAAGGTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65321319 537 + 171882078 TCTTAC----------------------TTAttttgtg----------------------------------------------------------------ttttatt---ttattttatttc-ttttgagatggagtcttgctctgttgcccaggctgaagtgcaggggcgtgagcttggctcactgcaacctccgtctcctgggttcaggtaattctcctgcctc-agccgaccaaatagctgggattacaggcacccaccaccacgcctggctagtttttgtatttttagtacagacagggtttcatcatgttggccatgttggtcttgaactcctgacctcaggcgatccacccacctcggcctcccaaagtgatggcattacaggtgtgaaccaccgcacctggccCAAAAGCTTTGTGTTTTTAAAGATATTAGACATGTTTATCATT--AAAAAGAAAAATCTT---CATAATGTAGGAGAATAAGAGAAATGTTCTTCCAAAAAAGAGAGATCATTGTGATTATTTTGTCTTATTGGAATGTTGGATACTATAGTCTACTTCCTTAATCATCAAGCATGCTATGAATTTTCCATTTTTATAGGACCTGTATCTCAGTTAAGGTG
i macFas5.chr7              C 0 I 276
s macNem1.NW_012011056v1      5377592 534 -   6271500 TCTTAC----------------------TTAttttgtg---------------------------------------------------------------------tt---ttattttatttc-ttttgagatggagtcttactctgttgcccaggctgaagcgcaggggcgtgagcttggctcactgcaacctccgtctcctgggttcaggtaattctcctgcctc-agccgaccaaatagctgggattacaggcacccaccaccacgcctggctagtttttgtatttttggtacagacagggtttcatcatgttggccatgttggtcttgaactcctgacctcaggcgatccacccacctcggcctcccaaagtgatggcattacaggcgtgaaccaccacacccggccCAAAAGCTTTGTGTTTTTAAAGATATTAGACATGTTTATCATTTAAAAAAAAAAAAACTT---CGTAATGTAGGAGAATAAGAGAAACGTTCTTCCAAAAAAGAGAAATCATTGTGATTATTTTGTCTTATTGGAATGTTGGATACTATAGTCTACTTCATTAATCATCAAGCATGCTATGAATTTTCCATTGTTATAGGACCTGTATCTCAGTGAAGGTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1836162 625 -   1987038 tcttacttattttgtattttattttattttattttattattttattttattttatattttattttattttattttattttatattttatttattttattttattttattttattattttatttc-ttttgagatgaagtcttgctctgtcgcccaggctggagtgcagtggcgtcagcttggctcactgcaaactccatcttctgggttcaagtgattctcctgcctc-agcctcccaaaaagctggaattacaggcacccactaccacacctggctaatttttgtatttttagtagaagtggggtttcttcatgttgtctaggctggtcttgaactcctgacctgagacaatccacccacctcggccttccaaagtgatgggattacagatgtgagccactgcactgggccCAAAAGCTTTGTGTTTTTAAAAATATTAGACATGTTTCTTATTTTTTA---AAAAAACTT---AATAATGTAGAAGAATAAGAGAAACGTTTTTCCAAAAAAGAGAAATCATTGTGATTATTTTATCTTATTGGAATGTTGGATATTATAGTCTGCTTCATTAATCATCAAGCATGCTATGGATTTTCCATTTTTATAGGGTTGGTATCTCAGTTAAGGTA
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5009119 529 -  54856640 -ttttt----------------------gtattttgta----------------------------------------------------------------ttttatt---ttattttatttc-ttttgagatggagtctcactctgccgctcaggctggagtgctgtggcatgatcttggctcactacaacctccatctcctgggttcaggtgattctcttgcctt-agcctcctgagtaggtatgattacaggcacccaccaacacgactggctactttttgcgttcttagtagagacggtgttttaccatgttggccaggctggtgtggagctccagacctcaggtgatccacccatctaggcctctcaaagtgctgggattacaggtgtgagccactgcacct-gCCAAAAAGCTTTGTGTTTTTAAAGATGTTAGACATGTTTCTTATTGAAAA---AAATATCTGAACAATAATGCAGGAG--------AAACGTTTTTCCAAAAAAGGTAAATCATTGTGATTATTTTATCTTGCTGGAATGTTGGGTAACGTAGTCTGCTTAATGAATCATCAGACATGCTATGGATTTTCCATTTTTATAGGTTTTGTATCTTTGTTAAGGTA
i saiBol1.JH378108          C 0 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       334769 978 -   1458659 M
e chlSab2.chr29              21075958   0 -  24206276 I

a score=241747.000000
s hg38.chr15_KI270850v1_alt    218678 69 +    430880 ATACTTGTAATTCTTGTGCTCCATTTGAAGATGAAAAAT-ATAGGCCAAAATCATAGACTTTGCATAGAA
s panTro5.chr15              18028382 69 -  83230942 ATATTGGTAATTCTTGTGCTCCATTTGAAGATGAAAAAT-ACAGGCCAAAATCATAGACTTTGCATAGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76622533 69 +  99763055 ACACTGGTAATTCTTGTACTTCATTTGAAGATGAAAAAT-GTAGGCCAAAATCATAGACCTTGCGTAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       317279 69 +    378907 ATACTGGTAAATCTCGTGCTCCACTTGAAGATGAAAAAT-ATAGGCCAAAATCATAGACTTTGCATAGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102172909 69 + 121039945 ATACTGGTAATTCTTGTGCTCCATTTGAAGATGAAAAAT-ATAGGCCAAAATCACAGATTTTGCATAGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60386954 69 + 169600520 ATACTGGTAATTGTTGTATTCCATTTGAAGATGAAAAAT-ATAGGCCAAAATCATAGACCTTGCATAGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65322132 69 + 171882078 ATACTGGTAATTCTTATACTCCATTTGAAGATGAAAAAT-ATAGTCCAAAATCATAGACTTTGCATAGAA
i macFas5.chr7              I 276 C 0
s macNem1.NW_012011056v1      5378126 69 -   6271500 ATACTGGTAATTCTTGTACTCCATTTGAAGATGAAAAAT-ATAGGCCAAACTCATAGACTTTGCATAGAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1836787 66 -   1987038 ATACTGGTAA---TTGTATTCCTTTTGAAGATGAAAAAT-ATAGGCCAAAATCATAGACCTTGCATAGAA
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5009648 70 -  54856640 ATACTGGTAATTCTTGTACTCCATTTGAAGATGAAAAATAAGAGTCCGAAATCATAGACTTTGCATTGAA
i saiBol1.JH378108          C 0 C 0
e calJac3.chr10             113855253 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       334769 978 -   1458659 M
e chlSab2.chr29              21075958  0 -  24206276 I

a score=199717.000000
s hg38.chr15_KI270850v1_alt    218747 57 +    430880 GCTGCATAATGAAGACAGCTCTGGAGGAACACATAG----ATACACACAGACACACATATA
s panTro5.chr15              18028451 57 -  83230942 GCTGGATAATGAAGACAGCTCTGGAGGAACACATAG----ATACACAAAGACACACATATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76622602 61 +  99763055 GCTGGATAATGAAGACAGCTCTGGTGGAACATGTAGACATATGCACACTGATACACATATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       317348 57 +    378907 GCTGCATAATGAAGACAGCTCTGGAGGAACACATAG----GTACACACAGACACACATATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102172978 55 + 121039945 GCTGGATAATGAAGACCGCTCTGGAGGAacacat------acacacacacacacaTATATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60387023 61 + 169600520 GCTGGATAATGAAGACAGCTCTGGAAGAacacatagatacacacacacagacacacaTATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65322201 61 + 171882078 GCTGGATAATGAAGACAGCTCTGGAGGAACGCATAGATacacacacacagacacacaTATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5378195 61 -   6271500 GCTGGATAATGAAGACAGCTCTGGAGGAACGCATAGATGCACACACATGGACACACATATA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1836853 61 -   1987038 GCTGGATAATGAAGACAGCTCTGGAAGAacacatagatacacacacacagacacacaTATG
i cerAty1.NW_012002657v1    C 0 C 0
s calJac3.chr10             113857849 49 - 132174527 ACTGGATAATGAAGACAGCTTTTAAGACACACACAG----ATAC------ACAGATATA--
i calJac3.chr10             I 2596 n 2596
s saiBol1.JH378108            5009718 55 -  54856640 GCTGGGTAATGAAGACAGCTTTGAAGGCACACATAG----ATACACACAGACAGATACA--
i saiBol1.JH378108          C 0 I 8
e otoGar3.GL873530            6785474 68799 -  36342412 T
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       334769 978 -   1458659 M
e chlSab2.chr29              21075958  0 -  24206276 I

a score=28051.000000
s hg38.chr15_KI270850v1_alt    218804 12 +    430880 T--AAAGTATATAC
s panTro5.chr15              18028508 12 -  83230942 T--AAAGTATGCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76622663 14 +  99763055 TAAAAAGTATAAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       317405 12 +    378907 T--AAAGTATACAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102173033 12 + 121039945 T--AAAGTATACAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60387084 14 + 169600520 TATAAAGTGTACCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65322262 14 + 171882078 TATAAAGTATACAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5378256 14 -   6271500 TATAAAGTATACAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1836914 14 -   1987038 TATAAAGTGTACCC
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5009781 12 -  54856640 --taaagtatacat
i saiBol1.JH378108          I 8 I 324
e calJac3.chr10             113857898 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       334769 978 -   1458659 M
e chlSab2.chr29              21075958  0 -  24206276 I

a score=18288.000000
s hg38.chr15_KI270850v1_alt    218816 9 +    430880 ACATATATT
s panTro5.chr15              18028520 9 -  83230942 ACATATATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76622677 9 +  99763055 ACATATATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       317417 9 +    378907 ACATATATT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102173045 5 + 121039945 AC----CTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60387098 9 + 169600520 ACATATATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65322276 9 + 171882078 ATGTATACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5378270 9 -   6271500 ATGTATACA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1836928 9 -   1987038 ACATATATT
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5010117 9 -  54856640 ACATATATT
i saiBol1.JH378108          I 324 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       334769 978 -   1458659 M
e chlSab2.chr29              21075958 0 -  24206276 I

a score=143741.000000
s hg38.chr15_KI270850v1_alt    218825 37 +    430880 TTTTAAAGTTTA-TTTTTAACAGTTTTAAAGCTTTTAA
s panTro5.chr15              18028529 37 -  83230942 TTTTAAAGTTTA-TTTTTTACAGTTTTAAAGCTTTTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76622686 36 +  99763055 TTTTAAAGTTTA-TTTTTAA-AGTTTTAAAGCTTTTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       317426 38 +    378907 TTTTAAAGTTTATTTTTTTACAGTTTTAAAGCTTTTAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102173050 37 + 121039945 TCTTAAAGTTTA-CTTTTTACAGTTTAAAAGCTTTTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60387107 37 + 169600520 TTTTAAAGTTTA-TTTTTTACAGTTTTAAAGTTTTTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65322285 37 + 171882078 TTTTTAAGTTTA-TTTTTTACAGTTTTAAAGCTTTTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5378279 37 -   6271500 TTTTTAAGTTTA-TTTTTTACAGTTTTAAAGCTTTTAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1836937 37 -   1987038 TTTTAAAATTTA-TTTTTTACAGTTTTAAAGTTTTTAA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       335750 37 -   1458659 TTTTTAAGTTTA-TTTTTTACAGTTTGAAAGCTTTTAA
i manLeu1.NW_012105520v1    M 978 C 0
s saiBol1.JH378108            5010126 29 -  54856640 TTTTAAAGTTCA-TTTTTTA--------AGGCTTTTAA
i saiBol1.JH378108          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e otoGar3.GL873530            6785474 68799 -  36342412 T
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I

a score=6006.000000
s hg38.chr15_KI270850v1_alt    218862 1 +    430880 A
s panTro5.chr15              18028566 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76622722 1 +  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       317464 1 +    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102173087 1 + 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60387144 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65322322 1 + 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5378316 1 -   6271500 A
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1836974 1 -   1987038 A
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       335787 1 -   1458659 A
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378108            5010155 1 -  54856640 A
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             410266 1 -  31380117 A
i otoGar3.GL873533          n 68799 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e chlSab2.chr29              21075958 0 -  24206276 I

a score=59523.000000
s hg38.chr15_KI270850v1_alt    218863 10 +    430880 GCAAAAGCCA
s panTro5.chr15              18028567 10 -  83230942 GCAAAAGCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76622723 10 +  99763055 GCAAAAGCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       317465 10 +    378907 GCAAAAGCCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102173088 10 + 121039945 GTAAAAGCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60387145 10 + 169600520 GCAAAAGCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65322323 10 + 171882078 GCTAAAGCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5378317 10 -   6271500 GCAAAAGGCA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1836975 10 -   1987038 GCAAAAGCCA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       335788 10 -   1458659 GCAAAAGCCA
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378108            5010156 10 -  54856640 GGAAAAGTCG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       639311 10 -   3745603 GCAAAAGCCG
i aotNan1.NW_018511953v1    N 0 C 0
s otoGar3.GL873533             410267 10 -  31380117 GCAAGAGCCA
i otoGar3.GL873533          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I

a score=78966.000000
s hg38.chr15_KI270850v1_alt    218873 25 +    430880 GCCCCTCCCCTCTCCCAGA-GTGGGC
s panTro5.chr15              18028577 25 -  83230942 GCCCCTCCCCTCTCCCAGA-GTGGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76622733 25 +  99763055 GCCCCTCCCCTCTCCTGGA-GTGGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       317475 25 +    378907 GCCCCTCCCCTCTCACAGA-GTGGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102173098  4 + 121039945 GCCC----------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60387155 25 + 169600520 GCCCGTCCCCTCTCCCAGA-GTAGGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65322333 25 + 171882078 GACCCTTGCCTCTCCCAGA-GTGGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5378327 25 -   6271500 GACCCTTGCCTCTCCCAGA-GTGGGC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1836985 25 -   1987038 GCCCGTCCCCTCTCCCAGA-GTGGGT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       335798 23 -   1458659 GCCCCTCCCCTCTCC--GA-GTGGGC
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378108            5010166 25 -  54856640 ACCCCTCCCCACTCCCGGA-GTGGGC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       639321 25 -   3745603 GCCCTTCCGCTCTCCCGGA-GTGGGT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             410277  5 -  31380117 GCCCC---------------------
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958             166817 26 +    584178 GCCTAGCCCCGCCCCCTGACGTGGGC
i dasNov3.JH564958          N 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I

a score=940676.000000
s hg38.chr15_KI270850v1_alt    218898 166 +    430880 ---------GGCCTCT---------------------------CCCCTCTCTCT-GAGT-GGGCGGGGACAGCGGTTG----CATGGGCAGCTTT--CCTTATGATGCTACAGGTCCCTCTGGA-CATGCT----GC-GCCTGGCCACGCCTCCTTTCCCTTTCATCTTTCTCACTGACCAATGGGCTTGGAACATTAAGGCCACGCCCCTATTCT
s panTro5.chr15              18028602 167 -  83230942 ---------GGCCCCT---------------------------CCCCTCTCTCT-TAGT-GGGCGGGGACAGCAGTTG----CATGGGCAGCTTT--CCTTATGATGCCACAGGTCCCTCTGGA-CATGCT----GCTGCCTGGCCACACCTCCTTTCCCTTTCATCTTTCTCACTGACCAATGGGCTTGGAGCATTAAGGCCACGCCCCTATTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76622758 193 +  99763055 ---------AGCCCCTCCCTGCTCCTGGAGTAGGCAGGCCCCGCCCCTCTCCCC-AAGT-GGGTGGGGACAGCAGTTG----CATGGGCAGCTTT--CCTTGTGATGCCACAGGTTCCTCTGGA-CACACT----GCTGCCTGGCCACGCCTCCTTTCCCTTTCATCTTTCTCATTGACCAATGGGCTTGGAGCATTAAGGCCCCGCCCC-ATTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       317500 167 +    378907 ---------AGCCCCT---------------------------CCCCTCTCTCT-TAGT-GGGCGGGGACAGCAGTTG----CATGGGCAGCTTG--CCTTATGATGCCACAGGTCCCTCTGGA-CATGCT----GCTGCCTGGCCACGCCTCCTTTCCCTTTCATCTTTCTCACTGACCAATGGGCTTGGAGCATTAAGGCCACGCCCCTATTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102173102 160 + 121039945 -------------------------------------------CTCCCCTCTCT-GAGT-GGGCTGGGACAGCGGTTG----CATGGGCTGCTTT--CCTTATGATGCCACAGGTCCCTCTGGA-CATGCT----GCTGCCTGGCCACGCCTCCTTTCCCTTTCATCTTTGTCACTGACCAATGGGCTTGGAGCATTAAGGCCACGCCCCTATTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60387180 169 + 169600520 ---------GGCCCTG---------------------------CCCCTCTCTCC-GAGT-GGGTGGGGACAGTGGTTG----CATGGGCAACTTTAGCATTGTGATGCCACAGGTCCCTCTGGA-CACACT----GCTGCTTGACCATGCCTCCTTTCCCTCTCATCTTTCTCACTGACCAATGGGCTTGGAACATTAAGGCCACGCCCCTATTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65322358 159 + 171882078 ---------GGCCCCT---------------------------CCCCTCCTTCT-GAGT---------AGAGCGGTTG----AATGGGCAGCTTT--CCTTGTGATGCCACAGGTCCCTCTGGA-CACCCT----GCTGCCTGGCCACGCTTCCTTTCCCTTTCATCTTTCTCACTGACCAATGGGCTTGGAGCATTAAGGCCACGCCCCTCTTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5378352 168 -   6271500 ---------GGCCCCT---------------------------CCCCTCCTTCT-GAGTAGAGCGGAGAGAGCGGTTG----CATGGGCAGCTTT--CCTTGTGATGCCACAGGTCCCTCTGGA-CATGCT----GCCGCCTGGCCATGCTTCCTTTCCCTTTCATCTTTCTCACTGACCAATGGGCTTGGAGCATTAAGGCCACACCCCTCTTCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1837010 169 -   1987038 ---------GGCCCTG---------------------------CCCCACTCTCC-GAGT-GGGTGGGGACAGTGGTTG----CATGGGCAGCTTTAGCATTGTGATGCCACAGGTCCCTCTGGA-CACACT----GCTGCTTGACCACGCCTCCTTTCCCTCTCATCTTTCTCAGTGACCAATGGGCTTGGAACATTAAGGCCACGCCCCTATTCT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       335821 166 -   1458659 ---------AGCCCCT---------------------------CCAGTCTCTCT-GAGT-GGGCGGGAACAGCAGCTG----CATGGGCAGCTTT--CCTTGTGATGGCACAGGTCCCTCTGGA-CAC-CT----GCCACCTGGCCACACCTCCTTTTCCTTTCATTTTTCTCACTGACCAATGGGCTTGGAGCATTAAGGCCACGCCCCTCTTCT
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378108            5010191 125 -  54856640 ---------AGCCCCT---------------------------CCCCTCTCTCG-GAGT-GGGCGGGGACAGCAGTTG----CACGTGCGGCTTT--CCTTGTGA-----------------------------------------------CACCTCCCCTTCATCTTTCTGATTGACCAATGGGCTTGGAGCATTAAGGCCACGCCCCCATTCT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       639346 165 -   3745603 ---------GGCCCTT---------------------------CCC--CTCTCA-GAGT-GGGCGGGGACAGGAGTTG----GAGGGGCAGCTGT--CCTTGGGAGGCCACAGGTCCCTCCGGA-GTGGTT----GCTGCCTGGCCACGCCTCCCTTCCCTTTCGTCTTTCTCATTGACCAATGGGATTGCAGCATGAAGGCCACGCCCCTATTCT
i aotNan1.NW_018511953v1    C 0 I 223
s otoGar3.GL873533             410282 158 -  31380117 -------------------------------------------CTCGTCTCCCCAAAGT-GGGCAGGGACAGCGGCTGCGCACGTGCGCAGCTGA--CGTGGTGACTTGA------CCTCTGGGTCCCACC----GCTCCCTGGCCACGCC-CCTTTTCCTTTCATCGTTCTCATTGACCAACGGGCCGGGAGCATTGGGGCCACGCCCACATTT-
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55234593 157 +  61074082 ---------GGTCCCG---------------------------CCCCCGCCCCG-AAGT-GGGCGGGGCCAGAGGCTG----CGCGCGCAGCTTT--CATTGTCACTCCACCTG-----------CTCGCG----GCAACCTGACCACGCCCATTCCCCCGTTCATCTTTCTCACCAGCCAATAGAATTGGAGCATTGAGGCCACGCCCACCAGCT
i canFam3.chr9              N 0 C 0
s dasNov3.JH564958             166843 175 +    584178 GGAGAAACCGCCTTTG---------------------------CCCCTCCCCCA-ATGT-GGGCGGTGACAGCGGCTG----CGCGCGCAGCCTG--CATTGTGACTCCAC----CCTTCTGGT-CACCCTCACAGCTGTCTGACCTCGCCCCCTTTT-CTTTCATCTTTCTCGTTGCCCAATGAGCTGGGAGCATTTAGGCCACGCCCACATTCT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I

a score=195814.000000
s hg38.chr15_KI270850v1_alt    219064 44 +    430880 GCGTTCCATTGGT---GCCCT--GGTTACG-CCACCTGTGGCTCAGTTGC
s panTro5.chr15              18028769 44 -  83230942 GCGTTCCATTGGT---GCCCT--GGTTACG-CCACCTGTGGCTCAGTTGC
i panTro5.chr15             C 0 I 113
s panPan2.chr15              76622951 44 +  99763055 GCATTACAGTGTG---GCCCT--GGTTACA-CCTCCTCTGGCTCAGTCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       317667 44 +    378907 GCGTTCCATTGGT---GCCCT--GGTTACG-CCACCTGTGGCTCAGTCAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102173262 44 + 121039945 GTGTTCTAGTGGG---GCCCT--GGTTACA-CCTCCTGTGGCTCAGTCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60387349 43 + 169600520 GCATTCTCCTGGG---GCCCT--GGTTACA-TCT-CTCTGGCTCAGTCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65322517 44 + 171882078 GAGTTCTAGTGGG---GCCCT--GGTTACG-CCTCCTCTGGCTCAGTTGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5378520 44 -   6271500 GAGTTCTAGTGGG---GCCCT--GGTTACG-CCTCCTCTGGCTCAGTTGC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1837179 43 -   1987038 GCATTCTCCTGGG---GCCCT--GGTTACA-CCT-CTCTGGCTCAGTCGC
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       335987 44 -   1458659 GAGTTCTACTGGG---GCCCT--GGTTACG-CCTCCTCTGGCTCAGTTGC
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378108            5010316 44 -  54856640 AGGTTCTAGTGCT---GCCCT--GGTTACG-CCTCCCCTGGCTCAGTCAC
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             410440 47 -  31380117 ATGTTTCCCTAGGCTCGCCTT--GGTCCCG-CCTGTTCTGGCTCAGTTGC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55234750 44 +  61074082 --GCTACCTAGAA---ACTCTAGGGTCCCT-CCCTTTCTGGCTCAGTCGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             167018 47 +    584178 GTGTTGCCTAGGA-CCGCCCT--GGTCCCTCCCTTCCCTGGCTCAGACCC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       639511 223 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I

a score=924598.000000
s hg38.chr15_KI270850v1_alt    219108 174 +    430880 ACAGCTGCCTGGTAGGTGACTGGAGGCATTGAGCAGTGCTCACTGGTATTTCGCTGATGTGGCCCCA---ACCCCGC---CT--CCCTCCCCACCCCGCGATGTCA------GAAAAAACACAACAGGGGAAATTGGCCGCAGCCAAGAAAAAGGTAAAACACACCAGGTCATGG-CCCCCAACCCAGC
s panTro5.chr15              18028926 174 -  83230942 ACAGCTGCCTGGTAGGTGACTGGAGGCATTGAGCAGCGCTCACTGGTATTTCGCTGATGTGGCCCCA---ACCCCGC---CT--CCCTCCCCACCCCGCGATGTCA------GAAAAAACACAACAGGGGAAATTGGCCGCAGCCAAGAAAAAGGTAAAACACACCAGGTCATGG-CCCCCAACCCAGC
i panTro5.chr15             I 113 C 0
s panPan2.chr15              76622995 154 +  99763055 ACAGCTGCCTGGTAGGTGACTGGAGGTG---------------------TTCGCTGATGTGGCCCTA---ACCCTGC---CT--CCCTCCCCACCCCACGATGTTA------GAAGAAACTCAACAGAGTAAACTGGACGCAGCCAAGAAAAAAGTAAAACGCATCAGATCATGGCCCCCCAACCCAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       317711 173 +    378907 ACAGCTGCCTTGTAGGTGACTGGAGGCATTCAGCAGTGCTCACTGGGATTTTGCTGATGTGGCCCCA---ACCCCGC---CT--CCCTCCCCA-CCCGCGATGTCA------GAAAAAACACAACAGGGGAAATTGGCCGCAGCCAAGAAAAAGGTAAAACGCACCAGGTCATGG-CCCCCAACCCAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102173306 174 + 121039945 ACAGCTGCCTGGTAGGTGACTGGAGGCATTCAGCAGTGCTCACTGGGACTTCACTGAGGTGGCCCCA---ACCCTGC---CT--CCCTCTGCACCCTGCGATGTCA------GAAAAAACACAACAGAGGAGAGTGGCCGCAGCCAAGAAAAAGGTGAAATGCCCCAGGTCATGG-CCCCCAACCCAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60387392 174 + 169600520 ATAGCTGCCAGGTAGGTAACTGGAGGCATTCAGCAGTGCTCACTGGGATTTTGCTGATGTGGCCCCA---ACCCCGC---CT--CCCTCCCCACCCTGCGATGTCA------GAAAAAACACGACAGGACAAATTGGCTGCAGCCAAGAAAAAGGTAAAGCGCACCAGGTCATGG-CCCCCAACCCAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65322561 174 + 171882078 ACAGCGGCCTGGTAGGTGACTGGAGGCATTCAGCCGTGCTCACTGGGATTTCGCTGATGTGACCCCA---ACCCCGC---CT--CCCTCCGCACCCCATGATGTCA------GAAAAAACACGACAGGGAAAATTCACCACAGCCAAGAAAAAGGTAAAATGCACCAGGTCATAG-CCCCCAACCCAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5378564 174 -   6271500 ACAGCGGCCTGGTAGGTGACTGGAGGCATTCAGCCGTGCTCACTGAGATTTCGCTGATGTGACCCCA---ACCCCGC---CT--CCCTCCGCACCCCATGATGTCA------GAAAAAACACGACAGGGAAAATTCACCACAGCCAAGAAAAAGGTAAAATGCACCAGGTCATAG-CCCCCAACGCAGC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1837222 174 -   1987038 ATAGCTGCCAGGTAGGTAACTGGAGGCATTCAGCAGTGCTTACTGGGATTTTGCTGATGTGGCCCCA---ACCCCGC---CT--CCCTCCCCACCTTGCGATGTCA------GAAAAAACACGACAGGATAAATGGGCTGCAGCCAAGCAAAAGGTAAAGCGCACCAGGTCATGG-CCCTCAACCCAAC
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       336031 174 -   1458659 ACAGCGGCCTGGTAAGTGACTGGAAGCATTCAGCCCTGCTCACTGGGATTTCGCTGATGTGACCCCA---ACCCCGC---CT--CCCTCCGCACCCCATGATGTCA------GAAAAAACACGACAGGGAAAATTCACCGCAGCCAAGAAAAAGGTAAAACACACCAGGTCATAG-CCCCCAACCCAGT
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378108            5010360 180 -  54856640 ACAGCTGCCTGCTAGGTGACTGGAGCTGTTTACCAGTGCTGGCCTG-ATTTTGCTGATGTGACCCCA---ACCCCGC---CT--CCCTCCCCACCCCGCGATGTCAACGTCCACAGAGTCTCGAGAGAGCAAATTGGCAGCAGCCAAAAAAAAGGTAAAACGTACTAGGTCATGGCCCCCCAACCCAGC
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             410487 180 -  31380117 ACTTCTGCGCGGTAGCAAGCGGAAGCAATTTCGCGGGGGTTGCCGGGATCTC-TTGAAGAGTTCCCGTATATCCCGCTCTCC--CCCTCCCCCCCACGGGATGTCG------GAAGAAACCCGACAGCAAAAATTGGCCTCGGCCAGGAAAAAGGTAAAACACGCCGGGTCGCGGCTCCCCGACCCAGC
i otoGar3.GL873533          C 0 I 1
s canFam3.chr9               55234794 174 +  61074082 ACACCGGCGCGGTGACTGCCGGAAGTGATGCCGCGGTGGTTGCCGGGATCGCGGTGATGTGGCC------ACCCCCC---TTACCCCTCCCCGTCCCGGGATGTCG------GAAGAAACCCGACAGAGCAAATTGGCTGCGGCCAAGAAAAAGGTAAAACGTGCCGGGTCGCGGCTCCCTGACCCAGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             167065 171 +    584178 GCATCGGCGCGGTAACGAGCGGAAGCAATTGCGAAGTGTCTGCCGGGATCGCGGTGATGTGGCC------CCCCCTT---AC--CCCGCCCCTTTCCGCGATGTCG------GAAGAAACCCGAAAGAGCAAATTGGCTGCAGCGAAGAAAAAGGTAAAGCGCGCTGGGTCGAGG-CTCCCGACCCAGC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       639511 223 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I

a score=739079.000000
s hg38.chr15_KI270850v1_alt    219282 136 +    430880 -CACAGATCCCCTCCGATGACAAGACCGGTGCCAGAGTCCATACCACTCCTGAGGCATACCAGATGGGGC---CCCCCAACCCCAGCCCCTCTGGGCT-CCCCCAA-CCAAAGCCTAGTCAGTCAGCCCCACCCCTTCAGCA
s panTro5.chr15              18029100 136 -  83230942 -CACAGATCCCCTCCGATGACAAGACTGGTGCCAGAGTCCATACCACTCCTGAGGCATACCAGATGGGGC---CCCCCAACCCCAGCCCCTCTGGGCT-CCCCCAA-CCAAAGCCTAGTCAGTCAGCCCCACGCCTTCAGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76623149 137 +  99763055 -CACAGATCCCCTTTGATGGCAAGACCACTGCCAGAGTCCATACCAGCCTTTAGGCACACCGGGCTGGGT---CCCCCCACACTGGCACCTCTGTGCTCCCCCCAA-CCAAAGTCTTGTCAGTCAGTCCCGCCCCTTCAGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       317884 136 +    378907 -CACAGATCCCCTCCGATGACAAGACCGGTGGCAGAGTCCATACCACTCCTGAGGCATACCAGACTAGGC---CCCCCAACCCCAGCGCCTCTGGGCT-CCCCCCA-CCAAAGTCTTGTCAGTCAGCCCCACCCCTTCAGCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102173480 136 + 121039945 -CACAGACGCCCTCTGATGACAAGACTGGTGCCAGAGTCCATACCAGTCCTGAGGCATACCAGACTGGGC---CCCCCAACCCCAGCGCCTCTGGGCT-CCCCTGA-CCAAAGTCTTGTCAGCCAGCCCCACCCCTTCAGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60387566 136 + 169600520 -CACAGATCCCCTCCGACAACAAGACCGTTGCCAGAGTCCATACCACTCCTGAGGCACACCAGACTGTGC---CCCCCAACCCCTGTGCCTCTGGGCT-CCCCCAA-CCAAAGTGTTGTCAGTCAGCCCCACACCTTCAGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65322735 136 + 171882078 -CACAGATCCTCTCCGATGACAAGACCATTGCCAGAGCCCATACTATTCCTCAGGCATACTGGAATGGGA---CCCCCAACACCAGCGACTCTGGGCT-CCCCCCA-CCAAATTCTTGTCAGTCAGCCCCACCCCTTCAGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5378738 136 -   6271500 -CACAGATCCTCTCCGATGACAAGACCATGGCCAGAGCCCATACTATTCCTCAGGCATAGCGGAATGGGA---CCCCCAACACCAGCGACTCTGGGTT-CCCCCCA-CCAAATTCTTGTCAGTCAGCCCCACCCCTTCAGCA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1837396 136 -   1987038 -CATAGATCCCCTCCGACAACAAGACCGTTGCCAGAGTCCATACCACTCCTGAGGCACACCAGACTGTGC---CCCCCAACCCCTGCGCCTCTGGGCT-CCCCCAA-CCAAAGTGTTGTCAGTCAGCCCCACACCTTCAGCA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       336205 136 -   1458659 -CACAGATCCCCTCCGACGACAAGACCATTGCCAGAGTCCAAACTACTCCTGAGACATATCGGAATGGGA---CCCCCAACACCAGCGACTCTGGGCT-CCCCCCA-CCAAATTCTTGTCAGTCAGCCCCACCCCTTCAGCA
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378108            5010540 136 -  54856640 -CGCAGATCCCCTCCAGTGGCAAAACTGCTGCCAGAGTCCAAACCAGTCCTGAGGCACACGGGACTGGGC---CCCACAACCTTGGAGTCTCTGAGCT-CCCCCTA-CCAAAATCTTGTCAGTCAACCCCATCCTTTCAGCA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       639734 137 -   3745603 -CACAGATCCCCTCCGACGGCAAGACCGCTGCCAGAGTCCATTACACTTCTGAG--ACACCAGACTGGGTGGGCCCCCAACCCCAGTGCCTCTGGGCT-CCCCCTA-CCAACGTCTTTTCAGTGAGTCCCACCCTTTCGGCA
i aotNan1.NW_018511953v1    I 223 C 0
s otoGar3.GL873533             410668 129 -  31380117 -CGAGGCTCCCCTCCCACGGTAGGACTATGGCCACAGTCTGTGCTACTCCTGAGACACGTAGAGCTAGCC---GCACC-------GCGTCGCTTGGCT-TCTCTCA-CCAAAGTCTTTTCAGCCAGCCCCGCCCCCTCAGTA
i otoGar3.GL873533          I 1 C 0
s canFam3.chr9               55234968 124 +  61074082 -CAAAGG-CCCCTCGGACGGCCGGGCCGTGGCCAGAATCTTTGCTGCCCCTGAGGCACACGGGGCTAGCC---CCG-------TGACGCCCCTTGGCG-CCCCCCACCCCAAGTCGTCTCAGCCAGTcccgcccccc-----
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             167236 123 +    584178 CCCGACGCCCCCTCCAACCCCCTCACCGTGACCAGAGTCTGAGCCGCCCCTGAGGCACTGGGGA----GA---ACCCCA----TGGCTCTCCTTGGCG-CCCACCT-----GGTCTTCTCAACCAGTCCCGCCCCCCTCG--
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I

a score=613720.000000
s hg38.chr15_KI270850v1_alt    219418 104 +    430880 AGCAGCCCAGTCCCTGCCCTTGCCAATC---ACCCCAGGGTGACTTTGGGCAGGTGACTCCTGGGGCTC----CCTGCTCCATAATCAGCCCTCACCTCCTGCCACCCCAA
s panTro5.chr15              18029236 104 -  83230942 AGCAGCCCAGTCCTTGCCCTTGCCAATC---ACCCCAGGGTGACTTTGGGCAGGTGACTCCTGGGGCTC----CCTGCTCCATAATCAGCCCTCACCTCCTGCCACCCCAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76623286 104 +  99763055 AGCAGCTCAGGCCCTGCCCTCACCAATC---ACCCCAGGGTGACTTTGGGCGAGTGACTTCTGGGGCTC----CCGGCTCCATACTCAGCCTTCACATCCTGCCACCCCAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       318020 104 +    378907 AGGAGCCCAGTCCCTGCCCTTGCCATTC---ACCCCAGGGTGACTTTGGGTGGGTGACTCCTGGGGCTC----CCTGCTCCATACTCGGCCCTCACCTCCTGCCACCCCAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102173616 104 + 121039945 AGGAGCCCAGTCCCTGCCCTTGCCAATC---ACCCCAGGGTGACTTTGGGCAGGTGATTCCTGGGGCTC----CCTGCTCCATACTCGGCCCTCACCTCCTATTGCCCCAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60387702 104 + 169600520 AGCAGCCCAGTCCCTGCCCTTGCCAATC---ACCCCAGCATGTCTTTGGGTGGGTGACTCCTGGGGCTT----CCCGCTCCATACTCAGCCCTAACCTCCTGCCGCCCCAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65322871 107 + 171882078 AGCAGCCCAATCCCTGCCCTTGCCGATCTTTACCCCAGGGTGACTTTGGGCGGGTGACTCCTGGGGCTC----CCCACTCCATACTTGGCCCTCACCTCCTGCTGCCCCAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5378874 107 -   6271500 AGCAGCCGAATCCCTGCCCTTGCCGATCTTTACCCCAGGGTGACTTTGGGTTGGTGACTCCTGGGGCTC----CCCGCTCCATACTTGGCCCTCACCTCCTGCTGCCCCAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1837532 104 -   1987038 AGCAGCCCAGTCCCTGCCCTTGCCAATC---ACCTCAGCATGACTTTGGGTGGGTGACTCCTGGGACTT----CCCGCTCCATACTCAGCCCTAACCTCCTGCCGCCCCAA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       336341 106 -   1458659 AGCAGCCCAGTCCCT-CCCTTGCCAATCTTTACCCCAGGGTGGCTTTTGGCGGGCGGCTTCTGGGGCTC----TCCGCTCCATACTCGGCCCTCACCTCCTGCTGCCCCAA
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378108            5010676 104 -  54856640 AGCAGCTCCGTCCTTGCCATCGCCAATC---ACCCCAGAGTGACTTTGGGCGGGTGACTCGTGGGACTC----CCCACTCCATACGTGGCCCTCACCTCCTGCCTCCCCAA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       639871 104 -   3745603 AGGAGCCCAGCCCCTGCCCTTGCCAATC---ACCCCAGGGTGACTTTGGATGTGTAACTCCTGAGGCTC----CCCGCTCCCTACGTGGGCCTCACCTTTTGCTGCTCCAT
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9               55235092 103 +  61074082 ggctgcccagcccccgccctcgcccgcc---gcccccg-gTGACTTTGGGCTGGTGACTCCCCGGGCTC----CCTGCTCCAGGTTTGGCCCTAGCCTTCTGCCACCCAGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             167359 107 +    584178 -GCCGCCCAGCCCTCGCCCTAGCCGGTC---GCTCCCAGGTGACTTTGGGCTCTTGACCCCGGGGCACCGGCACCGGCACCGGGAGCAGCCCTCGCCCCCTGCCGCCCAGA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e otoGar3.GL873533             410797   0 -  31380117 C
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I

a score=282947.000000
s hg38.chr15_KI270850v1_alt    219522 67 +    430880 GCCCAACCTCCCTGGGCTCTTTGGGCTTGCGTCTCCCAGGACCTGGGTCCCCCAGCCCCAGGCCCTG
s panTro5.chr15              18029340 67 -  83230942 GCCCAACCTCCCTGGGCTCTTTGGGCTTGCGTCTCCCAGGACCTGGGTCCCCCAGCCCCAGGCCCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76623390 67 +  99763055 GCCCGACCTCCCTGAGTTCTTTGGGCTCACCTCTCCAAGGACCTGGGTCCCCCAGCCCCAGGCCCCA
i panPan2.chr15             C 0 I 1
s gorGor5.CYUI01015946v1       318124 67 +    378907 GCCCAACCTCCCTGGGCTCTTCGGGCTTGTGTCTCCCAGGACCTGGGTCCCCCAGCCCCCAGCCCCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102173720 67 + 121039945 GCCCAACCTCCCTGGGCTCTCTGGGCTTGCGTCTCCCAGGACCTGGGTCCTCCAGCCCCAAGCCCCG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60387806 67 + 169600520 GCCCGACCTCCCTGGGCTCTTTGGGCTTGTGTCTCCCAAGACCTGGGCCCCCCAGCCCAAGGCCCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65322978 67 + 171882078 GCCTGACCTTCCTGGGCTCTTCGGGCTTGCGTCTCCCAGGACCTGGGTACTCCATCCCCAGGCCCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5378981 67 -   6271500 GCCTGACCTTCCTGGACTCTTTGTGCTTGTGTCTCCCAGGACCTGGGTACCCCAGCCCCAGACCCCA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1837636 67 -   1987038 GCCCGACCTTCCTGGGCTCTTTGGGCTTGTGTCTCCCAAGACCTGGGTCCCCCAGCCCAAGGCCCCA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       336447 67 -   1458659 GCCCGATCTCCCTGGGCTCTTTGGGCCTCCATCTCCCAGGACCTGGGTCCCCTAGCCCCAGGCCCCA
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378108            5010780 67 -  54856640 GATCAACCCCCCTGGGCTCTTTGGGCTTGTGTCTCTAAGGACCAGGGGTCCCCAGTCCTAGGCCCCA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       639975 61 -   3745603 GTCTGAGCTCCCTGGGCTCTGTGGGCTCATGTCTCTAAGGACGTGGGTCTCCCAGC------CCCCG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             410797 12 -  31380117 GCCCAAC-------------------------------------------------------CCCTG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55235195 33 +  61074082 --------------------------------AGCGGAGGACCTGGGCTCTCCAGGCC--GGTCCCG
i canFam3.chr9              C 0 T 120
s dasNov3.JH564958             167466 19 +    584178 ACCGGGCCACCTTGGGCTC------------------------------------------------
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I

a score=476138.000000
s hg38.chr15_KI270850v1_alt    219589 82 +    430880 C-CCTCACCAGTCATCCCTGGGTGGCTTTGGGCTGGTGACTCCCGGGGCTCCCTACTGCAGACTCTGCCCTCCCCTCCTGCTG
s panTro5.chr15              18029407 82 -  83230942 C-CCTCACCAGTCATCCCTAGGTGGCTTTGGGCTGGTGACTCCCGGGGCTCCCTACTGCAGACTCTGCCCTCCCCTCCTGCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76623458 82 +  99763055 C-CCTCACCAGTCATCCCTGGGTGACTTTGGGCTGGTGACTCCTGGGGCTTCCTGCTGCAGACTCTGCTCTCCCCTCCTGCTG
i panPan2.chr15             I 1 C 0
s gorGor5.CYUI01015946v1       318191 77 +    378907 C-CCTGGCCAGTCATCCCTGGGTGACTT-----TGGTGACTCCTGGGGCTCCCTACTGCAGACTCCACCCTCCCTTCTTGCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102173787 69 + 121039945 C-CCTTGCCAGTCATCCCTGGGTGACTTTGGGCTGGTGACTCCTGGGGCTCCCTACTGCAAACTCTGCC-------------G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60387873 83 + 169600520 CTCTTCACCAGTCGTCCCTGGGTGACTTTGGGCTGGTGACTTCTGGGGCTCCCTACTGCAGACTCTGCCCTCCCCTCCTGCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65323045 82 + 171882078 C-CGTTGCCAGTCGTCCTTGGGTGACTTTAGGCTGGTGATTCCCGGGGCTCCCTACTGCGGACTCTGCCCTCCCCTCCTGCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5379048 82 -   6271500 C-CGTCGCCAGTCGTCCTTGGGTGACTTTTGGCTGGTGATTCCTGGGGCTCCCTACTGCGGACTCTGCCCTCCCCTCCTGCTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1837703 83 -   1987038 CTCTTCACCAGTCGTCCCTGGGTGACTTTGGGCTGGTGACTTCTGGGGCTCCCTACTGCAGACTCTGCCCTCCCCTCCTGCTG
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       336514 82 -   1458659 C-CCTCGCCAGTTGTCCCTGGGTGACTTTAGGCTGGTGACTCCCGGGGCTCCCTACTGCAGACTCTGCCCTCCCTTCCTGCTG
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378108            5010847 82 -  54856640 C-CCTCACCAGCCATCCCCGGGTGACTTTGGGCTGGTGACTCCTGGGGCTCCCTGCTGCAGGCTCTGCGCTCCCCTCCTGCTG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       640036 82 -   3745603 C-CCTCATCAGTCATTTCTGGGTGACTTTGGGCTGGTGATTCCTGGGAATCCCTGCTGCAGACTCTGCCCTTCCCTCCTGCTC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             410809 82 -  31380117 C-CCTCGCCAGTTGCCCCTGGGTGACTTTGGACTGATGACTCCAGGGGGTCCTTGCTCTGAACTCAGTCCTAGCTTCCCACTG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55235108 81 +  61074082 c-cctcgcccgccgccccc-ggTGACTTTGGGCTGGTGACTCCCCGGGCTCCCTGCTCCAGGTTTGGCCCTAGCCTTCTGCCA
i canFam3.chr9              T 120 I 39
s dasNov3.JH564958             167485 16 +    584178 -----------------CCGGCCAACTT-----------------GGGCT---------------------------------
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I

a score=32816.000000
s hg38.chr15_KI270850v1_alt    219671 5 +    430880 CCCCA
s panTro5.chr15              18029489 5 -  83230942 CCCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76623540 5 +  99763055 ACCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       318268 5 +    378907 CCCCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102173856 5 + 121039945 CCCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60387956 5 + 169600520 CCCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65323127 5 + 171882078 CCCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5379130 5 -   6271500 CCCCA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1837786 5 -   1987038 CCCCA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       336596 5 -   1458659 TCCCG
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378108            5010929 5 -  54856640 CCCCA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       640118 5 -   3745603 CCCCA
i aotNan1.NW_018511953v1    C 0 I 14
s otoGar3.GL873533             410891 5 -  31380117 CCCCA
i otoGar3.GL873533          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             167501 0 +    584178 C
e canFam3.chr9               55235189 39 +  61074082 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e chlSab2.chr29              21075958 0 -  24206276 I

a score=126318.000000
s hg38.chr15_KI270850v1_alt    219676 31 +    430880 AGCTCGACCTCCCTAGGCTTCTTGGGCTGGC
s panTro5.chr15              18029494 31 -  83230942 AGCTCGACCTCCCTAGGCTTCTTGGGCTGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76623545 31 +  99763055 AGCCCGACCTCCCTGGGCTCTTTGGGCTGGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       318273 31 +    378907 AGCTCGACCTCCCTGGGCTTCTTGGACTGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102173861 31 + 121039945 AGCTCGACCTCCCTGGGCTTCTTGGGCTGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60387961 31 + 169600520 AGCTTGACCTCCCTGGGCTTCTTGGGCTGGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65323132 31 + 171882078 AGCTCCACCTCCCTGGGCTCCTTGGGCTGGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5379135 31 -   6271500 AGCTCGACCTCCCTGGGATCCTTCGGCTGGT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1837791 31 -   1987038 AGCTCGACCTCCCTGGGCTTCTTGGGCTGGT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       336601 31 -   1458659 AGCTCCACCTCCCTGGGCTCCTTGGGCTGGT
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378108            5010934 30 -  54856640 ACCTCCACCTCCCAGGGTTATTTCAGCTG-C
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             410896 31 -  31380117 AATTGCCTCTTCCTGAGCTCTGTGGGCTCCC
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958             167501 11 +    584178 --CCCGATCTCCC------------------
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       640123 14 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55235189 39 +  61074082 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I

a score=229896.000000
s hg38.chr15_KI270850v1_alt    219707 41 +    430880 GTCTCTGAGGACCTGGGTCGAAACCGTGTGTTTCCCTCCCC
s panTro5.chr15              18029525 41 -  83230942 GTCTCTGAGGACCTGGGACGAAACCGTGTGTGTCCCTCCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76623576 41 +  99763055 GTCTCCGTGGACCTGGGTCCCAGCCCTACATCCCCCTGCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       318304 41 +    378907 GTCTCCGAGGACCTGGGTCAAAACCCTGTGTTTCCCTCCCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102173892 41 + 121039945 GTCTCCGAGGACCTGGGTCAAAACCCTGTGTTTCCCTCCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60387992 41 + 169600520 GTCTCCAAGGACCTGGGTCCCAACCCTGTGTTTTCCTCCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65323163 40 + 171882078 GTCTCCAAGGACCTGGGT-TGATCCCTGTGTTTCCCTCCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5379166 41 -   6271500 GTCTCCAAGGACCTGGGTCTGAACCCTGTGTTTCCCTCCCC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1837822 41 -   1987038 GTCTCCAAGGACCTGGGTCCCAACCCTGTGTTTTCCTCCCC
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       336632 41 -   1458659 GTCTCCAAAGACCTGGGTCTGAACCCTGTGTTTCCCTCCCC
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378108            5010964 41 -  54856640 ATCTCCAAAGGCCTGGGTCCCAACCCTGTGTTTCCCTCCCC
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             410927 41 -  31380117 ATCTTCAAGGACCTGGATCCCGGCCCTAGGTTCCCCTCCCC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55235228 41 +  61074082 GTGTCCAGGGACCTCGGTCCCAGCCCTGCTTTCCCCTCCCC
i canFam3.chr9              I 39 C 0
s dasNov3.JH564958             167512 34 +    584178 -------GGGACCTCGGTACGGGCGCTGCGCTGCCCTCCCC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       640123 14 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I

a score=184111.000000
s hg38.chr15_KI270850v1_alt    219748 46 +    430880 CATCGTGGAGCAGCGACTCGGGCATCGCG-----CTGATGTGGT----CCCCTCC
s panTro5.chr15              18029566 46 -  83230942 CATCGTGGAGCAGCGACTCTGGCTTCGCG-----CTGATGTGGT----CCCCTCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76623617 50 +  99763055 CATTGTGAATCGGTGACTCAGCCATCACA-----CTGATGTTGTTCCCTCCCTCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       318345 46 +    378907 CATCGTGGAGCGGCGACTTGGGCATCAAG-----CCGATGTGGT----CCCCTCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102173933 46 + 121039945 CATCGTGGAGCGGTTACTCGGGCATCGCG-----CTGATGTGGT----CCCCTCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60388033 46 + 169600520 CATCCTGGAGTAGCAACTCGGGCATCGCA-----CTGATGTGGT----CCCCTCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65323203 46 + 171882078 CATCATGGAGTGGTGACTCGGGCATCATG-----CTGATGTGGT----CCCCTCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5379207 46 -   6271500 CATCATGGATTGGTGACTTGGGCATCACA-----CTGATGTGGT----CCCCTCC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1837863 46 -   1987038 CATCCTGGAGTAGCAACTCGGGCATCGCA-----CTGATGTGGT----CCCCTCC
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       336673 51 -   1458659 CATCATGGAGTGGTGACTCGGGCATCGCATCGCGTTGATGTGAT----CCCCTCC
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378108            5011005 46 -  54856640 CATCATGGAGCAGCACCTTGGACGTGCCA-----CTCATGTGGT----CCCCTCC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       640137 46 -   3745603 CATCATGGAGCAGTGACTCAGGCATCTCC-----TTGATGTGGT----CCCCTCC
i aotNan1.NW_018511953v1    I 14 I 5
s otoGar3.GL873533             410968 30 -  31380117 CATCGCGGAGCAGAGAGTGGGTCGTAGGT-----A--------------------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55235269 30 +  61074082 CACCGCGGAGCGGCGACTCGGGCGTTGGT-----A--------------------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             167546 30 +    584178 CACCGCGGAGAGGCGACTCGACGGTGGGT-----C--------------------
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I

a score=185075.000000
s hg38.chr15_KI270850v1_alt    219794 34 +    430880 CCTGGGAGGAGTGGAATGCAATGATGTCACAGCG
s panTro5.chr15              18029612 34 -  83230942 CCTGGGAGGAGTGGAATGCAATGATGTCACAGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76623667 34 +  99763055 CCTAGGAGGAGTGGAATGTAGTGATGTCACAGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       318391 34 +    378907 CCTGGGAGGAGTGGAATGTAGTGATGTCACAGTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102173979 34 + 121039945 CCTGGGAGGAGTGGAATGTAGTGATGTCACAGTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60388079 34 + 169600520 CCTGGGAGGAGTGGAATCTAGTGATGTCACAGTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65323249 34 + 171882078 CCTGGGTGGAATGGAATGTAGTGACGTCACAGTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5379253 34 -   6271500 ACTGGGAGGAATGGAATGTAGTGATGTCACAGTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1837909 34 -   1987038 CCTGGGAGGAGTGGAATCTAGTGATGTCACAGTC
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       336724 34 -   1458659 CCTGGGAGGAGTGGAATGTGGTGATGTCACAGTC
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378108            5011051 31 -  54856640 CCTAGGAGGA---GAATGTAGTGATGCCACAGTC
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             410998 31 -  31380117 ---GGGTGGAGTGCAGTGTAGTTACCTCGCAGTC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55235299 31 +  61074082 ---GGGAGGAGGGGAATGTAGTTACGTCACAATC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             167576 25 +    584178 ---AGGAGAGACGGAAAGCACTTACGTC------
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       640183  5 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I

a score=3538950.000000
s hg38.chr15_KI270850v1_alt    219828 571 +    430880 CCCCTAGGAACTGTCATTACTGCTGCAAG-ACCAGCCTTTGATCTTACAACCCAGTCCCCTAAGTTTTCTCACCCCATTTCTGGTTCCTCTGGTTGCAGCACAAATTTCCAGCTGGAAGGGGAGTGGAGACTATGGGACCTAGGAGCAACAGGTTTCAGGCTGCCTTACT----------CC--------CTTAA--CATAGAC--ATTGACAGTGGGAAAAGCCTACACTTCCCCTGT-GAGCTCAAAATGTTCACAGTATCTCTGGGTGGCAAT-GGGAGA----ATGGG-----TTTGGTTTGGTTTTTTCCCAGGCTTCTACTTTCCAGAGAGACTTTAACAT-TTTTTTCTGAGTTCTCCAC--------------------GGTTCTGGGACCAGA--------------CTGCCCTTCAGTCAGTGGCCTCTGAAGTGAGATTTGCTCATCTTCTGTGGAATAGATCTTGGGAAACTGAACTTGACAGC-T-TGAATCTTCCTCA---TATCG---TCTC-AACCTggggtac-ttt---gagtgccacaggataaatgcgggacatctttctgaagcatcattttcccttgaTTCTCTT----GA-----GAAAATG------------CATTAATGTACTTGGGGATGACAGACACATAGGTTTC
s panTro5.chr15              18029646 571 -  83230942 CCCCTAGGAACTGTCATTACTGCTGCAAG-ACCGGCCTTTGATCGTACAACCCAGTCCCCTAAGTTTTCTCACCCCATTTCTGGTTCCTCTGGTTGCAGCACAAATTTCCAGCTGGAAGGGGAGTGGAGACTATGGGACCTAGGAGCAAGAGGTTTCAGGCTGCCTTACT----------CC--------CTTCA--CATAGAC--ATTGACAGTGGGAAAAGCCTACACTTCCCCTGT-GAGCTCAAAATGTTCACAGTATCTCTGGGTGGCAAT-GGAAGA----ATGGG-----TTTGGTTTGGTTTTTTCCCAGGCTTCTACTTTCCAGAGAGATTTTAACAT-TTTTTTCTGAGTTCTCCAC--------------------GGTTCTGGGACCAGA--------------CTGCCCTTCAGTCAGTGGCCTCTGAAGTGAGATTTGCTCATCTTCTGTGGAATAGATCTTGGGAAACTGAACTTGACAGC-T-TGAATCTTCCTCA---TATCG---TCTC-AACCTGGGGTAC-TTT---GAGTgccacaggataaatgtgggacatctttctgaagcatcattttcccttgaTTCTCTT----GA-----GAAAATG------------CATTAATGTACTTAGGGATGACAGACACATAGGTTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76623701 592 +  99763055 TCCCCAGGAATTGTCATTACTGCTTCAAA-ACCGGCCTTTGATCTTACAACCCAGTCCCCTAAGCATTCTCACCCCATTTCTGGTTCCTCTGGTCACAGCACAAATTTCCAGCTGGAAGGG--GTGGGGACTATGGGACCTAGGGGCAAGAGGTTTCAGGCTGCCTTACT----------CC--------CTTCA--CATAGAC--ATTGACAGCGTGAAAAGCCTCCAATTCCCC-GT-GAGCTCAAAACATTGACAGTATCTCTGGGTGGCAAT-GGGAGA----ACAGG-----TTTGGTTTGATTTTCTCCCAGGCTTCTACTCTCCAGAGAGACTTTAACAT-TATTTTCTCAGTTCTCCACCTCATATTCTAATTCTTCATGGTTCTGGGACCAGA--------------CTGCCCTTCAGTCAATGGTCGCTGGAGTGAGATTTGCTCATCTTCTGTGGAATAGATCTTGGGAAATTGAACTTGACAGC-T-TGAATCTTCCTCA---TATCA---TCCC-AATCTggggtac-tgt---gagtgccacaggataaatgtgggagatctttctgaagcatcaatttcccttgaTTCCCTTGAGAGA-----GAAAAAG------------CATTAATGTACTTAGGGAAGACAGTCACATAGGTTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       318425 572 +    378907 CCACGAGGAACTGTCATTACTGCTGCAAG-ACCGGCCTTTGATCTTACAACCCAGTCCCCTAAGTTTTCTCCCCCCATTTCTGGTTCCTCTTGTTGCAGCACAAATTTCCAGCCGGAAGGGGAGTGGAGACTATGGGACCTCTGAGCAAGAAGTTTCAGGCTGCTTTACT----------CC--------CTGAA--CAATGTCTAATTCACAGTGTGAAAAGCCTACACTTCCCCTGT-GAGCTCAAAACATTGACAGTATCTCTGGGTGGCAGT-GGGAGA----ATGGA-----TTTGGTTTGGTTTTCTCCCAGGCTTCTACTTTCCAGAGAGACTTTAACA--TATTTTCTGAGTTCTCCAC--------------------GGTTCTGGGACCAGA--------------CTGACCTTCAGTCAGTGGCCTCTGAAGTGAGATTTGCTCATCTTCTGTGGAATAGATCTTGGGAAACTGAACTTGACAGC-T-TGAATCTTCCTCA---TATCA---TCTC-AACCTGGGGTAC-TTT---GAGTgccacaggataaatgtgggacatctttctgaagcatcattttcccttgaTTCTCTT----GA-----GAAAAAA------------CATTAATGTACTTAGGGATGACAGACACAGAGGTTTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102174013 570 + 121039945 CCCCTAGGAACTGTCATTACTGCTGCAAG-ACCGGCCTTTGGTCTTACAACCCAGTCCCCTAAGTTTTCTCACCCCATTTCTGGTTCCTCTGGTTGCAGCATAAATTTCCAGCTGGAAGGGGAGTGGGGACTATGGGGCCTAGGAGCAAGAGGTTTCAGGCTGCCTTACT----------CC--------CTTCA--CATAGAC--GTTGACAGTGGGAAAAGCCTCCACTTCCCCTGT-GAGCTGAAAACATTGACAGTATCTCTGGGTGGCAAT-GGGAGA----ATGGG-----TTTGG-TTGGTTTTCTCCCAGGCTTCTACTTTCCAGAGAGACTTTAACAT-TTTTTTCTGAGTTCTCCAC--------------------GCTTCTGGGACCAGA--------------CTGCCCTTCAGTCAGTGGTCTCTGAGGTGAGATTTGCCCATCTTCTGTGGAATAGATCTTGGGAAACTGAACTTGACAGC-T-TGAATCTTCCTCA---TATCA---TCTC-AACCTGGGGTAC-CTT---GAGTgccacaggataaatgtgggacatctttctgaagcatcattttcccttgaTTCTCTT----GA-----GAAAAAT------------CATTAACGTACTTAGAGATGACAGACACATAGGTTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60388113 574 + 169600520 CCCCTAGGAACTGTCATTACTGCTGCAAG-ACTGGCCTTTGATCTTATGCCCCAGTCCC-TAAGTGTTCTCACCCCATTTCTGGTTCCTCTGGTCACAGCACAGATTTCCAGCTGGAAGGAGAATGGGGATTATGGGACCTAGGAGCAGTAGGTTTCAGGCTGCCTTACT----------CC--------CTTAA--CGTAGAC--ATTGACAGTGGGAAAAGCCTACACTTCCCCCAT-GAACTCAAAATGTTGACAGTATCTCAGGGCGGCAAT-GGGAGA----ACGGG-----TTTGGTTTGGTTTTCTCCCAGGCTTCTACTTTCCAGAGAGACTTTAACAT-TTTTTTCTGAGTTCTCCAC--------------------AGTTCTGGGACCAAA--------------CTGCCCTTCAGTCAGTGGTCTCTGAAGTGAGATTTGCTCATCTTCTGTAGAACAGATCTTGGGAAACTGAACTTGACAGC-T-TGAATCTTCCTCA---TATCA---TCTC-AACTTggggtac-ttt---gagtgccacaggataaatgtgggagatctttctgaagcatccgtttccctcaattctctt----aa-----gagagaa-aaat-------cattaATGTACTTAGAGATGACAGTCACATAGGTGTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65323283 571 + 171882078 CCCCTAGGAACTGCCATTGCTGCTACAAG-ACCAGCCGTTGATCTTACAACCCAGTCCCATAAATTTTCTCACCCCATTTCTGGATCCTCTGGTCACAGCACAAATTTCCAGTTGGAAGGGGAATGGGGACTATGGGACCCAGGAGCAGGAGGTTTCAGGCTGCCTTACT----------CC--------CTTCA--CATAGAC--ATTGACAGTGGGAAAAGCCTGCACTTCCCCTGT-GTGCTCAAAACCTTGACAGTATCTCTGGGTGGCCAT-GGGAGA----ACGGG-----TTTGGTTTGGTTTTCTCCCAGGCTTCTACTTTGCAGAGAGACTTTAACAT-TCTTTTCTGAGTTCTCCAC--------------------GGTTCTGGGACCAGA--------------TGGTCCTTCAGTCAGTGGTCTCTGAAGTGAGATTTGCTCATCTTCAGTGGAATAGATCTTGGGAAGCTGAACTAGATAGC-T-TGACTCTTCCTCA---TATCA---TCTC-AACCTGGGGTAC-TTT---GAGTGCCACAGGATGAATGTGGGACATCTTTCTGAAGTGTCATTTTCCCTTGATTCTCTT----CA-----GATCAAA------------CATTAATGTCCTTAGGGATGACAGTCACATAGGTTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5379287 571 -   6271500 CCCCTAGGAACTGTCATTACTGCTGCAAG-ACCAGCCTTTCATCTTACAACCCAGTCCCCTAAGTTTTCTCACCCCATTTCCGGATCCTCTGGTCACAGCACAAATTTCCAGTTGGAAGGGGAATGGGGACTATGGGACCCAGGAGCAAGAGGTTTCAGGGTGCCTTACT----------CC--------CTTCA--CATAGAC--ATTGACAGTAGGAAAAGCCTGCACTTCCCCTGT-GTGCTCAAAACGTTGACAGTATCTCTGGGTGGCCAT-GGGAGA----ACGGG-----TTTGGTTTGGTTTTCTCCCAGGCTTCTACTTTGCAGAGAGACTTTAACAT-TCTTTTCTGAGTTCTCCAT--------------------GGTTCTGGGACCAGA--------------CCGCCCTTCAGTCAGTGGTCTCTGAAGTGAGATTTGCTCATCTTCAGTGGAGTAGATCTTGGGAAGCTGAACTAGATAGC-T-TGAATCTTCCTCA---TATCA---TCTC-AACCTGGGGTAC-TTT---GAGTgccacaggatgaatgtgggacatctttctgaagcatcattttcccttgaTTCTCTT----CA-----GATCAAA------------CATTAATGTCCTTAGGGATGACAGTCACATAGGTTTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1837943 573 -   1987038 CCCCTAGGAACTGTCATTACTGCTGCAAG-ACTGGCCTTTGATCTTATGCCCCAGTCCC-TAAGTGTTCTCACCCCATTTCTGGCT-CTCTGGTCACAGCGCAGATTTCCAGCTGGAAGGAGAATGGGGATTATGGGACCTAGGAGCAGGAGGTTTCAGGCTGCCTTACT----------CC--------CTTAA--CGTAGAC--ATTGACAGTGGGAAAAGCCTACACTTCCCCCAT-AAACTCAAAATGTTGACAGTATCTCAGGGCGGCAAT-GGGAGA----ACGCG-----TTTGGTTTGGTTTTATCCCAGGCTTCTACTTTCCAGAGAGACTTTAACAT-TTTTTTCTGAGTTCTCCAC--------------------AGTTCTGGGACCAAA--------------CTGCCCTTCAGTCAGTGGTCTCTGAAGTGAGATTTGCTCATCTTCTGTAGAACAGATCTTGGGAAACTGAACTTGACAGC-T-TGAATCTTCCTCA---TATCA---TCTC-AACTTGGGGTAC-TTT---GAGTgccacaggataaatgtgggagatctttctgaagcatccgtttccctcaattctctt----aa-----gagagaa-aaat-------cattaATGTACTTAGAGATGACAGTCACATAGGTTTC
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       336758 571 -   1458659 CCCCTAGGAACTGTCATAACTGCTGCAAG-ACCAGCCTTTCATCTTACAACCCCATTCCCTAAGTTTTCTCACCCCATTTCCCGTTCCTTTGGTCACAGCACAAATTTCCAGTTGGAAGGGGAATGGGGACTATGGGACCCAGGAACAAGAGGTTTCAGGCCGCCTTACT----------CC--------TTTCA--CAGAGAC--ATTGACAGTGGGAAAAGCCTGCACTTCCCCTGT-GTGCTCAAAACGTTGACAGTATCTCTGGGTGGCCAT-GGGAGA----ACGGG-----TTTGGTTTGGTTTTCTCCCAGGCTTCCACTTTGCTGAGAGACTTTAACAT-TCTTTTCTGAGTTCTCCAC--------------------GGTTCTGGGACCAGA--------------TGGCCCTTCAGTCAGTGGTCTCTGAAGTGAGATTAGTTCATCTTCAGTAGAGTAGATCTTGGAAAACTAAACT-GACAGC-T-TGAATCTTGCTCA---TATCA---TCTCAAACCTGGGGTAC-TTT---GAGTgccacaggatgaatgtgggacatctttctgaagcatcagtttcccttgaTTCTCTT----CA-----GATCAAA------------CATTAATGTCCTTAGGGATGACAGTCACATAGGTTTC
i manLeu1.NW_012105520v1    C 0 I 50
s saiBol1.JH378108            5011082 573 -  54856640 CCTCCATGAACTGTCATTACTGTTGCAAG-GCCTGACCTTGATCTTACAACCCGGTCCCCTAAGCGTTCTGATCCCATTTCTGGTTCCTCTGGTCACACAACACATTTCCAGCTGGAAGGGGAATGGATAATATGGGAC---------------------CTGCCTCACT----------CC--------CTTAA--CATAGAC--ATTGACAGGGTGAGAAGCCTACACTTCCCCTGT-GAGCTCAAAATGTTATCAGTATCTCT-GGTGCCAAT-GGAAGA----ATGGG-----TTGGGCTTGGTTTTCTTCCAGGCTTCTACTCTCCAGAGAGACTTTAACAT-TTTTTTCTGAGTTCTCCACCTCATATTCGAATTCTCCATAGCTCTGGGACCA-A--------------CCGTCCTTCAGTCAGTGGTCTCTGGAATGAGGTCTCCTCGTCTTCTATTGAATAGATCTTGGGAAACT-CACTTGACAGC-T-TGGATCTTCCTCA---TATCA---CCTC-AACCTGGGGTACTTTT---GAGTGCCACAGGAAAATTATGGGACATCTTTCTGAAGAGTCAGTTTCCCTGGAGTCTCTC----GAGAGAGGAAAAAA------------CAATAATGTACTTAGGGATGATGGTCACATGGGTTTC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       640188 590 -   3745603 CCCCTAGGAACCATCATTACTGCTGCAAG-ACCAGCCTTTGATCTTAGGACCCAGTCCCCTAAGCATTCTCATCCCATTTCTGGCTCCTCTGGTCGCAGCACAAATTTTCAGCTGGATGGGGAATGGGGACTGTGGGACCTAGGAGCGAGAGGTTTCAGGCTGCCTCACT----------CA--------TTTAA--CATAGAC--ATTGACAGCGTGAAAAGCCTACACTTCCCCCGT-GAGCTCAAAACGTTGACACTGTCTCTGGGCAGCAAT-GGGAGA----ACGGG-----TTTGGTTTGGTTTTCTCCCAGGCTTCTACTCTCCAGAGAGACTTTCACGT-TTCTTTCTGAGTTCTCCACCTCATATTGTAATTCTCCATGCTTCTGGGACCAGA--------------CTGCCCTTCAGTCAGTGGCCTCTGGAGTGAGATCTGCTCATCTTCTGTGGAACAGATCTTGGGAAATTGAAATTGGCAGC-T-TGAATCTTCCGCA---TATCA---TCTC-AACCTGGGCTAC-TTT---GAATgccatgggataaacatggggcatctttctgaagcatcag-ttCCCTTGATTCTCTT----GA-----GAAAAAA------------CATTAATGTACTTAGGGATGACAGTCACATAGGTTTC
i aotNan1.NW_018511953v1    I 5 C 0
s otoGar3.GL873533             411029 560 -  31380117 CCCCTCGGAGCTGTCATTACTGTCGAGAG-CCTGGCCTTTGATCTTAAGACCCAATACCCCGAGTGTTC--ATTCCATTTCTGGTTTCTCTGGTCAAGGCACAGATTTCTAATTGGAAGGGGACTAAGAACTATGGAATTTAAGACCGAGAGGTTTCAGGCT-CCTTATT----------CC--------CTTAA--CTTAAAT--ATTGGCAGTGCGA-AAGCCTACACTTCACCAGTAGAGCTGGAAACCTTGACAGTATCTCTGGGTTGCAAT-GGGAGA----ACGGG-----TTGGGTTTGCTTTTCTCCCAGGTTTCTACGCTCCAGAGAGAC--TAAAAT-TTTTTACTGAGTTCTCTAC-------------------------------------------------CTCATATTCACTTAGTGCTCTGTGGAATGAGGTCTACTTCTCTTCTGTAGAACAGATCCTGGGAAACTGAACTTCACCGCTT-TGAATCTTCCCCA---CATTACCTTCTC-AACATGAGGTTC-TCT---GAGTGCCACAGGATTACTATGGGAGAGCTTTCCAAAGATTCAGTTTTGCTTGATTCTCTG----GA-----GAGAGAAAAAAA-------CATGAATATACTTAGGGATGACATTTGCATATACTTG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55235330 607 +  61074082 CCCCTCGGAACTGTCATTAGCGCCAGGAGCCCCGGTGTTTGGTCTTACTACCCAGTCTCCC-AGTGTTTTCATACCCTTTCCGGTTTCTCCGGTCGCGGCGCAAATTTCCAGCTTGAAGGGGACTGGGGACTATGGGACCTAGGTGGGAGAGGTTTCAGGAGCCCTTACTCTAGACTGTACC--------CCATC--CTTAAAC--ATTGAC------------------TACACCAGT-GATCATGGAACATTGGTAACACCTT--GGTGACAATGGGGAGA----GTGTGTTTTCTTTGGTATGGTTTCCTTTTAGGTTTCTACTGTCCAGAAAGACTTTCACATATTAAATCTGAATTCTCTACCTCACATTTTAATTCCTTATGATTCT-GGACCAGAGTCCCCCCCGCCTCCCCCCCATCAATCAGTGCTCTTTGGAGTGAGATCTGCTTATCCTCTGTGGAACTGATCTCTGGAACCTGAATTTCATAGG-TGGGAATCTTCCCCAAATCATCA---TCTC-AACATGGAGTGT-TCT---GAGGGCCACAGGAT-AATATAGAA-------CTGAAGCATCAATTGTGCTTGATTCTTTT----GA-----GAAAGAA-AAATCCTTTTATAGTAATGTAC-TAGGGATGACATTTGTGTAGATTTG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             167601 477 +    584178 ------GTAACTATCATAATCGCCGCAGG-ACCAGCCTTTGATCTTCCGACCCAGACCCCT-TGTGTGTTCATCCC-CTTCCGGTTTCTGTGGTCGTCCCGCAGGTTTTCAGCCTGAAGGGGCCTCTGGACTATGGGGCATAGGCCC-AGAGGTTTCCAACTTCCATATG----------CTGGTCTGTACTGCATCCTCAGAC--ATTGACAGGTTGAAAAGCCCAAATTTCACCCGT-GATCTTGAAACGTTTACAACATCACTGGGTGACAGTGGGGAGAGCCTATTTG-----TTTGCTTTGGTTTTCTCCCAGGTTTCTACTCTCCAGAGAGACTTTCAAA--AATTTTTTAAGTTCTCTGCCTCACGTTCTAATTCCCTGTGATTCTGGGACCAGA--------------ACTCCCCTCAATCAGTGCTCTTTAAAGTGAGATTTGCTAATCT---GTGGAAGAGATCCTGGGAAACTGA-----------A-TGAA------------TTTCA---CCTA-------GGGTAC-TCCGAAGAGTGCT------------TGGGA-------------------------------------------------------------------------------------------------------
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I

a score=1544920.000000
s hg38.chr15_KI270850v1_alt    220399 314 +    430880 CA--AGCGTATACCAGACTTTGCTCTGAAATGAGGCTTGG-------GTTGTCCTCTTTCTGATAAATTCCCAGATTTAATAGAAA---------AG--------CTGCCTTCTGCCATGAGGACACATTGATATGAAAGTGTGAGAGGTACTGGTACGCTTCTTCACGCTAGCAGACCTGTGAGGA----------TGTATGA-CTCTAAACCACACGGCCTACAGTTCCTGCCTGCTTAATGTGTGC-TTTTCTACCTCTGCCCCTGGTTTTGGTCCCTGGAAGCTGCTGA-TTCATGGCAAAACCCCAGAGCGTGGAGTCAGAGGAC---TGAGTTTAAGTTCCAGTATTGC-----C
s panTro5.chr15              18030217 314 -  83230942 CA--AGCGTATACCAGACTTCGCTCTGAAATGAGGCTTGG-------GTTGTCCTCTTTCTGATAAATTCCCGGATTTAATAGAAA---------AG--------CTGCCTTCTGCCATGAGGACACATTGATACGAAAGTGTGAGAGGTACTGGTGCGCTTCTTCACGCTAGCAGACCTGTGAGGA----------TGTGTGA-CTCTAAACCACACGGCCTACAGTTCCTGCCTGCTTCATGTTTAC-TTTTCTACCTCTGCCCCTGGTTTTGGTCCCTCgcagctgctga-ttcatggcaaaaccccagagcttggagtcagaggac---tgagtttaagttccagtattgc-----c
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76624293 314 +  99763055 TA--ACAGTATATCAGACTTCTCTCTGAAATGAGACTTGA-------GTTGTCCTCTTTTGGATAAATTCCCAGATTTAACAAAAA---------AG--------CTGCCTTCTGCCATGAGGACACATTGATATAAAAGTTTAAGAGGTACTGGTGCACTTCTTCACACTAACAGACATGTGAGGA----------TGTATGA-CTGTAACCCACACAGAGTGCAGTTCCTGTCTACTTAATGTTTAC-TTTTCTACCTCTGCCTCTAGTTTTGGTCCCTggcagctgctga-ttcatggcaaaaccccagagcttggagtcagaagac---tgagtttaagttcCATTATTGC-----C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       318997 314 +    378907 CA--AGCGTATACCAGACTTCTCTCTGAAATGAGGCTTGG-------GTTGTCCTCTTTCTGATAAATTCCCAGATTTAACAGAAA---------AG--------CTGCCTTCTGCCATGAGGACACATTGATATGAAAGTGTGAGAGGTACTGGTGCGCTTCTTCACACTAGCAGACCTGTGAGGA----------TGTATGA-CTCTAAGCCACACGGCCTACAGTTCCTGCCTGCTTAATGTTTAC-TTTTCTACCTCTGCCCCTGGTTTTGGTCCCTGGCAGCTGCTGA-TTCATGGCAAAACCCCAGAGCTTGGAGGCAGAGGAC---TGAGTTTAAGTTCCAGTTTTGA-----C
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102174583 314 + 121039945 CA--AGCATATACCAGACTTCTCTCAGAAATGAGGCTTGG-------GTTGCCCTCTTTCTGATAAATTCCCAGATTTAACAGAAA---------AG--------CTGCCTTCTGCCATGAGGACACGTTGATATGAAAGTATGAGAGGTACTGGTGCACTTCTTCACACTAACAGACGTGTGAGGA----------TGTATGA-CTCTAAACCACATGGCCTACAGTTCCTGCCTGCTTAATGTTTAC-TTTTCTACCTCTGCCCCTGGTTTTGGTCCCTGGCAGCTGCTGA-TTCATGGCAAAACCCCAGAGCTTGGAGTCAGAGGAC---TGAGTTTAAGTTCCAGTATTGC-----C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60388687 318 + 169600520 TAAGAGAGTATACCAGACTTCTCTCTGAAATGAGACTTGG-------ATTATCATCTTTCTGATAAATTCCTGGGTTTAACAAAGA---------AG--------CTGCCTTCTGCCATGAGGACACATTGATATAAAAGTTTGAGAGGTACTGGTGCACTTCTTTA-ACTACCAGACATGTGAGGA----------TGTATGA-CTCTAAACCACACAGAGTGCGGTTCCTGCCTACTTAATGTTTAC-TTTTCTACCTCTGCCTCTGGTTTTGGTCCCTGGCAGATGCTGA-TTCATGGCAAAACCCCAGAGCTTGGAGTCAGAAGACAAATGAGTTTAAGTTCCATTATTGT-----C
i rheMac8.chr7              C 0 I 48
s macFas5.chr7               65323854 314 + 171882078 TA--AGCATATACCAGACTTCTCTCTGAAATCAGGCTTGG-------GTTGTCCTCTTTCTGAAAAATTCCCAGATTTAACAGAAA---------AG--------CTGCCTTCTGCCATGAGGACACATTGATATGAAAGTGTGAGAGGTACTGGTGCACTTCTTCACACTAACGGACATGTGAGGA----------TGTATGA-CTCTAAACCACACGGCATACAGTTCCTGCCTCCTTCATGTTTAC-TGTTCTAACTCCGCCCCTGGTTTTGGTCCCTGGCAGCTGCTGA-TTCATGGCAAAACCCCAGACCTTGGAGTCAGAAGAC---GGAGCTTAAGTTCCAGTATTAA-----C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5379858 314 -   6271500 GA--AGCATATACCAGACTTCTCTCTGAAATCAGGCTTGA-------GTTGTCCTCTTTCTGAAAAATTCCCAGATTTAACAGAAA---------AG--------CTGCCTTCTGCCATGAGGACACATTGACATGAAAGTGTGAGAGGTACTGGTGCACTTCTTCACACTAACGGACATGTGAGGA----------TGTATGA-CTCTAAACCACATGGCATACAGTTCCTGCCTGCTTCATGTTTAC-TGTTCTAACTCCGCCCCTGGTTTTGGTCCCTGGAAGCTGCTGA-TTCATGGCAAAACCCCAGAGCTTGGAGTCAGAAGAC---TGAGCTTAAGTTCCAGTATTAA-----C
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1838516 318 -   1987038 TAAGAGAGTATACCAGACTTCTCTCTGAAATGAGACTTGG-------ATTATCCTCTTTCTGATAAATTCCTGGATTTAACAGAGA---------AG--------CTGCCTTCTGCCATGAGGACACATTGATATAAAAGTTTGAGAGGTACTGGTGCACTTCTTCA-ACTACCAGACATGTGAGGA----------TGTATGA-CTCTAAACCACACAGAGTGCGGTTCCTGCCTACTTAATGTTTAC-TTTTCTACCTCTGCCTCTGGTTTTGGTCCCTGGCAGATACTGA-TTCATGGCAAAACCCCAGAGCTTGGAGTCAGAAGACAAATGAGTTTAAGTTCCATTATTGT-----C
i cerAty1.NW_012002657v1    C 0 I 48
s saiBol1.JH378108            5011655 314 -  54856640 TA--AGAGTGTACCAGACTTCTCTCTGAAATGAGGCTTGG-------GTTGTCATCTTGCTGATAAATCCCCAGATTTAACAGAAA---------TG--------CTGCCTTCTGCCATGACGACACATCGATATAAAAGTGAGAGCGGTACTGGCGCACTTCTTAACACCAACAGAGGTGTGAGGA----------TGTGTGA-CTGTAAA-CATACAGCGAACAGGTCCTGTCTACTGAATGTTGACGTTTTCTACCTCTGCCTCTGGTTTTGCTCCctggaagctgctga-ttcatagaaaaatcccagagcttagagtcagaagac---tgagtttaagttccagtattgc-----c
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       640778 317 -   3745603 TA--AGAGTATACCAGACT--TCTCTGAAATGAGACTTGG-------GTTGTCCTCTTTCTGATGAATTCCCAGATTTAACAGAAA---------GG--------CTGCCTTCTGCCAGGAGGACACATTGATATAGAAGTGTGAGAGGTGCTGGTGCTCTTCTTAACACTAACAGACATGTGAGGC----------TGTGTGA-CTCTAAGCCACACGGTGTACAGTTCCTGCCTACTTCATGTTGAC-TTTTCTACCTCTGCCTGTGGTTTTGCTCTCTGGAAGTTGCTGA-TTTGTGGCAAAACCCCGAAGCTTGGAGTTAGAGGAA---TGAGTTTAAGTTCTAGTATTGCtttatc
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             411589 316 -  31380117 TA--AGATTACAATAGACCTTTCTCTGAAATGATGCTTGGCTTGTCCCTTGTCCTTTTTCTGTTAGTTTCCTAAGTTCACTAGGGATATACTTTCAC--------TACCCTCCTGCCATTAGGGCACATTGACTTACATTTTTAAGACGTACTGGTGTGCAGCT-----CTCACAGATGTTTAAGGAAGGGCCCCACTGCCTGA-CTCTGAGCCACACAATGCACAGCTCCTGCCTACTAGATGCTTCC-TT---------------TGGTTTTGCCCCAC----ACTGCAGA-TTCATGGCTAAACCCCAGAGCTTAGAGTTGGAAGAC---TGAATTTAAATTGCATTATTGC-----C
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55235937 309 +  61074082 TA--AGATTATGATAGACTTCTCTCTGAAATGGTGCTTGG-------ATTGTCCTCTTTCTGTTAGGTTTCCACATTCACTAGGTG---------TGTGCCTTTACTGCCTTCTGCCATCAGGATACGTTGATATAAAAGTTTGATAAATACCAATGTGCAGCTT-----TAACAGATTTGTAGGAA----------AG---GA-CTCTAAAGT-CAGATTACTCAGATGTTATTTTTCCCAC-----C-TTTTCCACCTCCACCTCTGGTTTTGCCTTTTGGCACCTGCTGATTTCATGGCATAACCCCAGAACTCAGAGTCAGAAGAC---TAAGTTTAAATTCCATTATTGC-----C
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             168078 179 +    584178 ------------------------------------------------------------TATAAAGTACAGATATTTAAGAAAGA---------GT--------C---------------------------------------------CTGG------------------------------------------TATCTGATTTCTAAATCTCACGATGTATTGGTCTTTACCAGTTAACGTT-AC-TTTTTTATGTATATCTCTTGTTTTG-CCCCTGACAGTGACTGA-TTTATAGCAGAATTCCAGAGCCTGGAGTTA---------GAAGTTTAAATTCCATTATTGC-----C
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337329  50 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I

a score=4664.000000
s hg38.chr15_KI270850v1_alt    220713 1 +    430880 t
s panTro5.chr15              18030531 1 -  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76624607 1 +  99763055 C
i panPan2.chr15             C 0 I 13
s gorGor5.CYUI01015946v1       319311 1 +    378907 t
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102174897 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65324168 1 + 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5380172 1 -   6271500 T
i macNem1.NW_012011056v1    C 0 C 0
s saiBol1.JH378108            5011969 1 -  54856640 t
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       641095 1 -   3745603 t
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             411905 1 -  31380117 T
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55236246 1 +  61074082 T
i canFam3.chr9              C 0 I 7
s dasNov3.JH564958             168257 1 +    584178 T
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1838834 48 -   1987038 I
e rheMac8.chr7               60389005 48 + 169600520 I

a score=-3165.000000
s hg38.chr15_KI270850v1_alt    220714 27 +    430880 tttttgatctttc------tttttttttttttC-
s panTro5.chr15              18030532 25 -  83230942 TTTTTGATCTTTC--------TTTTTTTTTTTC-
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       319312 19 +    378907 --------ttttc------tttttttttttttC-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102174898 13 + 121039945 --------------------TTTCTTTTTTTTC-
i nomLeu3.chr6              C 0 I 1
s macFas5.chr7               65324169 27 + 171882078 ------ATTTCTTTTGTTTTTTTGGTTTTTTTC-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5380173 15 -   6271500 ------ATTTCTT------------TTTTTTTC-
i macNem1.NW_012011056v1    C 0 C 0
s saiBol1.JH378108            5011970 26 -  54856640 -ttcttttttttt------tttttttttttttt-
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       641096 26 -   3745603 -ttctcttttctt------tctttctttttttt-
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             411906  5 -  31380117 ----------------------------TTTTA-
i otoGar3.GL873533          C 0 I 4
s canFam3.chr9               55236254 26 +  61074082 AATTCCATTATTG------CCTTTTCTTTTCT--
i canFam3.chr9              I 7 C 0
s dasNov3.JH564958             168258 16 +    584178 ------------------TTTTTTTTTTTTTTTA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76624608 13 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1838834 48 -   1987038 I
e rheMac8.chr7               60389005 48 + 169600520 I

a score=75798.000000
s hg38.chr15_KI270850v1_alt    220741 29 +    430880 TATCCATGATATGAAT-----CCCTCT---CAGTCAC
s panTro5.chr15              18030557 29 -  83230942 TATCCATGATATCAAT-----CCCTCT---CAGTCAC
i panTro5.chr15             C 0 I 4
s panPan2.chr15              76624621 29 +  99763055 TAGCTATAATATCCAT-----CCCTCT---CTGTCAC
i panPan2.chr15             I 13 I 4
s gorGor5.CYUI01015946v1       319331 28 +    378907 TATCCATGATATCAAT-----CCCTCT---CAATCG-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102174912 29 + 121039945 TATCCATGGTATCAAT-----CCCTCT---CAGTCAC
i nomLeu3.chr6              I 1 I 4
s macFas5.chr7               65324196 29 + 171882078 TAGCCATGATATCAAT-----CCCTCT---CAGTCAC
i macFas5.chr7              C 0 I 16540
s macNem1.NW_012011056v1      5380188 29 -   6271500 TATCCATGATATCAAT-----TCCTCT---CAGTCAC
i macNem1.NW_012011056v1    C 0 I 4
s saiBol1.JH378108            5011996 25 -  54856640 tGCC----ATATCAGT-----CCCTCT---CAGTCAC
i saiBol1.JH378108          C 0 I 4
s aotNan1.NW_018511953v1       641122 29 -   3745603 tCCCCATGACATCAAT-----CCCTCT---CAGTCAC
i aotNan1.NW_018511953v1    C 0 I 4
s otoGar3.GL873533             411915 29 -  31380117 AAGCCATGTTAACAGT-----CTATTT---TAGTCAC
i otoGar3.GL873533          I 4 I 4
s canFam3.chr9               55236280 32 +  61074082 TAGTCATGTTATCAGT-----CTATTTCTGCAGTCAC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             168274 33 +    584178 AAGCCATGTTACATGTCATGGCATTTT---TAAAAA-
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1838834 48 -   1987038 I
e rheMac8.chr7               60389005 48 + 169600520 I

a score=478391.000000
s hg38.chr15_KI270850v1_alt    220770  97 +    430880 TGATTGTGACAACaccttgtacagttgttggtggcattacatcagatggt--atata-agggtattttgtcaaaactgtaaaggag-------------------------------------gatgtggctgtagg
s panTro5.chr15              18030590  97 -  83230942 TGATTGTGACAACACCTTGTACAGTTGTTGGTGGCATTACATCAGATGGT--ATATA-AGGGTATTTTGTCAAAACTGTAAAGGAG-------------------------------------GATGTGGCCGTAGG
i panTro5.chr15             I 4 C 0
s panPan2.chr15              76624654  95 +  99763055 TGATCGTGACAACACCTTGT--AGTTGTTGGTGGCATTAAATCAGATAGT--TTATA-AGAGTATTTTGCAAAAACTGTAAAGGAG-------------------------------------AATGTGGCTGTAGA
i panPan2.chr15             I 4 C 0
s gorGor5.CYUI01015946v1       319359  92 +    378907 -----GTGACAACACCTTGTCCAATTGTTGGTGGCATTAAACCAGATGAT--ATATA-AGGGTATTTTGTCAAAACTGTAAAGGAG-------------------------------------GATGTGGCTGTAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102174945  97 + 121039945 TGATTGTGACAGCACCTTGTACAGTTGCTGGTGGCATTAAATCAGATGGT--GTATA-AGAGTATTTTGTCAAAACTGTAAAGGAG-------------------------------------GATGTGGCTATAGG
i nomLeu3.chr6              I 4 C 0
s rheMac8.chr7               60389053  97 + 169600520 TGATTGTGACAACaccttatacagttgtaggtggcattaaatcagatggt--gtata-agagtattttgcaaaaactgtaaaggag-------------------------------------gatgtgcctgtagg
i rheMac8.chr7              I 48 C 0
s macFas5.chr7               65340765  97 + 171882078 TGATTGTGACAACACCATGTACAGTTGGTGGTGGCATTAAATCAGATGGT--GTATA-AGAGTATTTTGTCAAAACTGTGAAGGAG-------------------------------------GGTGTGGCTGTAGG
i macFas5.chr7              I 16540 C 0
s macNem1.NW_012011056v1      5380221  97 -   6271500 GGATTGTGACAACACCTTGTACAGTTGGTGGTGGCGTTAAATCAGATGGT--GTATA-AGAGTATTTTGTGAAAACTGTAAAGGAG-------------------------------------GATGTGGCTGTAGG
i macNem1.NW_012011056v1    I 4 C 0
s cerAty1.NW_012002657v1      1838882  97 -   1987038 TGATTGTGACAACACCTTGTACAGTTGTAGGTGGCATTAAATCAGATGGT--GTATA-AGAGTATTTTGCAAAAACTGTAAAGGAG-------------------------------------GATGTGCCTGTAGG
i cerAty1.NW_012002657v1    I 48 C 0
s saiBol1.JH378108            5012025  97 -  54856640 TGACTGCAGCAACAACTTGTACAGTTGTTGGTGGCATTAAATCAGACAAT--GTATA-AGACTGTATGGTAAAAACTTTAAAGGGG-------------------------------------GATGTGGCTGTCGG
i saiBol1.JH378108          I 4 M 361
s aotNan1.NW_018511953v1       641155  97 -   3745603 TGATTGTGACAACaccttatagagttgttggtggcattaaatcagatggt--gtata-acggtattttgtaaaaactgtaaagtag-------------------------------------gttgtgactgtagg
i aotNan1.NW_018511953v1    I 4 C 0
s otoGar3.GL873533             411948 131 -  31380117 TGGTTGTTACAATCATTTG----GTTGTTGGTGGCATTAAATCAGACATT--GTACACAATATATTTTGTAAAAACTGTAAAGTAAAAAATAAAGCAAAAAAGACCCCTCCCACATGAAGTATGATGTAATCATATG
i otoGar3.GL873533          I 4 C 0
s canFam3.chr9               55236312  97 +  61074082 TGAGAATTACAACaccttgtagggctgttggtggcattaagtcagatggcgagtatg-ggagtatattgt--aaactacaaagttg-------------------------------------gacatgaatacagg
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             168307  56 +    584178 TGAGAATTATAACA-CTTGTAGGGTTGGTGGTGGCATTAAATCAGATGGC--GTATA-GG-----------------------------------------------------------------------------
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337329  50 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I

a score=833578.000000
s hg38.chr15_KI270850v1_alt    220867 183 +    430880 ggctgatcattCTCATGAGTGTTACTGCTCTTCTTTCCCACAGTTA-----------------------------AAAGCATATTGGCAGAGGAAGAGCCCTGGCATTCCAGCAGGAGCTAACAGGAAAAAGAAAGT---CAATGGCAGTAGCCCTGACACAGCCACTTCTGGTGGTTACCACTCACCTGGGGATGTGAGTCTCGGCGGGCCAGG
s panTro5.chr15              18030687 183 -  83230942 GGCTGATCATTCTCATGAGTGTTACTGCTCTTCTTTCCCACAGTTA-----------------------------AAAGCATATTGGCAGAGGAAGAGCCCTGGCATTCCAGCAGGAGCTAACAGGAAAAAGAAAAT---CAATGGCAGTAGCCCTGACACAGCCACTTCTGGTGGTTACCACTCACCTGGGGATGTGAGTCTCGGCGGGCCAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76624749 183 +  99763055 GGCTGGAAGTTCTCATGTGTATTACTGCTCTTCTTTCCCACAGCTA-----------------------------AAAGAATATCAGCAGAGGAACAGCCCTGGTGTTCCAGCAGGAGCGAAGACAAAAAAGAAAAA---AACTGGCAGTAGCCCTGAGACAACCACTTCTGGTGGTTGCCACTCACCTGGGGATGTGAGTCTTGGCTGGCCTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       319451 183 +    378907 GGCTGATCATTCTCATGAGTGTTACTGCTCTTCTTTCCCACAGTTA-----------------------------AAAGAATATTGGCAGAGGAAGAGCCCTGGCATTCCAGAAGGAGCTAACAGGAAAAAGAAAAT---CAATGGCAGTAGCCCTGACACAGCCACTTCTGGTGGTTACCACTCACCTGGGGATGTGAGTCTCGGCGGGCCAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175042 180 + 121039945 GGCCGATAGTTCTCATGAGTGTTACTGCTCTTTTTTCCCACAGTTA-----------------------------AA---ATATTGGCAGAGGAAGAGCCCTGGCACTCCAGCAGGAGCTAACGTGAAAAAGAAAAT---CAATGGCAGTAGCCCTGATACAGCCACATCTGGTGGTTACCACTCACCTGGGGATGTGAGTCTTGGCTGGCCAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60389150 183 + 169600520 ggCTGGTGGTTCTCATGAGTATTACTGCTCTTCTTTCCCATAGCTG-----------------------------AAAGAGTATCAGCAGAGTAAAAGCCCTGGTGTTCCGGCAGGAGCGAAGACAAAGAAGAAAAA---AACTGGAAGTAGCCTTGAGACAACCACTTCTGGTGGTTGCCACTCACCTGAGGATGTGAGTCTTGGCTGACCAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65340862 212 + 171882078 GGCTGATAGTTCTCATGAGTGTCACTGCTCTTCTTTCCCACAGTTAAAAGAATATTGGCAGAGGAAGAGCCCTGGAAAGAATATTGGCAGAGGAAGAGCCCTGGCGTTCCAGCAGGAGCTAACAGGAAAAAGAAAAT---CAATGGCAGTAGCCCTGACACTGCCGCTTCTGGTGGTCACCGCTCACCTGCGGATGTGAGTCTTGGCTGACCAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5380318 183 -   6271500 GGCTGATAGTTCTCATGAGTGTTACTGCTCTTTTTTCCCACAGTTA-----------------------------AAAGAATATTGGCAGAGGAAGAGCCCTGGCGTTCCAGCAGGAGCTAACAGGAAAAAGAAAAT---CAATGGCAGTAGCCCTGACACAGCCACTTCTGGTGGTCACCGCTCACCTGTGGATGTGAGTCTTGGCTGGCCAGG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1838979 180 -   1987038 GGCTGGTGGTTCTCATGAGTATTACTGCTCTTCTTTCCCACAGCTG-----------------------------AAAGAGTATCAGCAGAGGAACAGCCCTGGTGTTCCGGCAGGAGTGAAGACGAAGAAAAAA------ACTGGAAGTAGCCCTGAGACAACCACTTCTGGTGGTTGCCACTCACCTGAGGATGTGAGTCTTGGCTGACCAGG
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       641252 183 -   3745603 ggttCGTAGTTCTCATGAGTATTACTGCTGCTTTTTCCCACAGTTA-----------------------------AAAGAATTTCAACAAAGAAACAGCCCTGCTGTTCCATCACGAGTGAGAAGATGAAATAAAAG---AAACAACAGTAGCCGTGAGATAGCTCCTTCTGATGCTTGCCAGTCACCGTGCCATGTGAGTCTTGGCTGGCCAGG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             412079 183 -  31380117 GGCTTATAATTTTCATGAATCTTACTGCTTTTCCTTTCCACAGTTG-----------------------------CTAGAATTTCAGCGGAAGCACAATCTACCATCTTCTTATACAAAGAAGAAGAAGAAAGTAAA---AAATGATGGTAGCTCTGAGTCAACTACTTCTGATGATTGCCACTCACCTGAGGACGTGAGTCATGGTTTGCCAGG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55236409 180 +  61074082 ggtttatagttCTCATGAGCCCCACTGATTTTCCTTTCTGTAGTTG-----------------------------AGGGAGTATCAGCAGAAGAACAGCCCTGGTGT------AGGAGCAAAGAAGAAAAGGAAGATTAAAAATGGCAGTAGCCCTGAGACTACCACTTCCAATGATTGTCACTCTCCTGAGGATGTGAGTACTGGCTGGCCAGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             168363 179 +    584178 GGCTTAGACTTCTCATGAGTGTC----TTTTTCCTTTCTGCAGTTA-----------------------------AGAGAATTTCAGCAGAGGAACAGCCCTGGTGTTCCTGCAGGAGCCAAAAAGAAAAGAAAGATCAAAAATAGCAGTAGCCCGGAGATACCAACTTCTGGTGG---CCACTCGCCTGAGGATGTGAGTCTTGGCTGGTCAGC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337329  50 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e saiBol1.JH378108            5012122 361 -  54856640 M

a score=265038.000000
s hg38.chr15_KI270850v1_alt    221050 80 +    430880 -CTCCTGGGGACAGGGG-GCCCAAGGGGCAGTAGAGGGTAATTGTTAAGATTGTAGATG---GACTGTTGGGtactggttaagaa
s panTro5.chr15              18030870 80 -  83230942 -GTCCTGGGGACAGGGG-GCCCAAGGGGCAGTAGAGGGTAATTGTTAAGATTGTAGATG---GACTGTTGGGTACTGGTTAAGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76624932 69 +  99763055 -CTCCTGGGGACAGGGG-GCCCAaggggcagtggagggtaattgttaagct--------------tgctgggtactggttaagaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       319634 80 +    378907 -CTCCTGGGGACAGGGG-GCCCAaggggcagtagagggtaattgttaagattgtggatg---gactgttgggtactggttaagaa
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60389333 69 + 169600520 -CTCCTGGGGACAGGAG-TCCCAAGGGGcagtaaaggataattgttgaga--------------ttgctgggtactggtagagaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65341074 79 + 171882078 -CTCCTGGGGACAGGGG-GCCCAAGGGGcagtagaggataattgttaaga-tgtgaatg---gactgttgggtactggttaagaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5380501 80 -   6271500 -CTCCTGGGGACAGGGG-ACCCAaggggcagtagaggataattgtaaagattgtggatg---gactgttgggtactggttaagaa
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1839159 69 -   1987038 -CTCCTGGGGACAGGAG-TCCCAAGGGGcagtaaaggataattgttgaga--------------ttgctgggtactggtagagaa
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       641435 80 -   3745603 -CTTCTGGGGAAAAGGG-GCCCACGGGGCAGTAGAGGGTCATTGTTAAGATTgtggaag---aacttccgggtactggttaggaa
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             412262 79 -  31380117 -CCCTTGGGGATAGGGG-GCTTA-GGAGAAGTAAGGAGAACTGGTTAAGATTgtggaaa---aagtgttgggtactgggtaagag
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55236589 71 +  61074082 -TTCCTGGGGCCAGGGGTGTTTGAGGGGCAGTAGAGGGTGGTGGTTGATACTGTGGAGG---AGATGTCAGGTAC----------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             168542 84 +    584178 CTCCCTGGGATCGGGAT-GCTGAAGGTGcagtagagggtactggtttagactgtggaagagaaagtatcaagtactggttaagaa
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e nomLeu3.chr6              102175222  0 + 121039945 C
e saiBol1.JH378108            5012122 361 -  54856640 M

a score=170700.000000
s hg38.chr15_KI270850v1_alt    221130 31 +    430880 ttctggatttgaatcctgcctctccgtctgc
s panTro5.chr15              18030950 31 -  83230942 TTCTGGATTTGAATCCTACCTCTCCGTCTGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76625001 31 +  99763055 ttctgggtttgaatcctgcctctccatcttc
i panPan2.chr15             C 0 I 8
s gorGor5.CYUI01015946v1       319714 31 +    378907 ttctgggtttgaatcctgcctctctatctgc
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60389402 31 + 169600520 ttgtgggtttgaatcctgcctctccgtctgc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65341153 31 + 171882078 ttctgggtttgaatcctgcctctccatctgc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5380581 31 -   6271500 ttctgggtttgaatcctgcctctccatctgc
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1839228 31 -   1987038 ttctgggtttgaatcctgcctctccatctgc
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5012483 31 -  54856640 TTctgggtttgaatcctgcctctccatctgc
i saiBol1.JH378108          M 361 C 0
s aotNan1.NW_018511953v1       641515 31 -   3745603 ttctgggtttgaatcctgcctctccatctgc
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             412341 31 -  31380117 tactgagtttgaattctacctttcccactgc
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55236660 27 +  61074082 ----GGATTTGAATCCTACCTCTCCCTCTGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             168626 22 +    584178 ttctggctttg---------tcttcctctgc
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e nomLeu3.chr6              102175222  0 + 121039945 C

a score=-11060.000000
s hg38.chr15_KI270850v1_alt    221161 29 +    430880 taagaattgattagggat--------------tgattagcata
s panTro5.chr15              18030981 29 -  83230942 TAAGGATTGATTTGGGat--------------tgattagcata
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       319745 29 +    378907 taaggattgattagggat--------------tgattagcata
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60389433  8 + 169600520 ta-----------------------------------ggcatc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65341184 29 + 171882078 taatgattgattagagat--------------taattaggata
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5380612 29 -   6271500 taatgattgattagggat--------------taattaggata
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1839259  8 -   1987038 ta-----------------------------------ggcatc
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5012514  8 -  54856640 -----------------------------------tagggata
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       641546  8 -   3745603 -----------------------------------tagggata
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             412372  8 -  31380117 -----------------------------------tagggata
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55236687 32 +  61074082 -----------TGGGAATATGCCCCATCAATAAAGTTGGGGTA
i canFam3.chr9              C 0 I 4
s dasNov3.JH564958             168648  8 +    584178 -----------------------------------taggggta
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76625032  8 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e nomLeu3.chr6              102175222  0 + 121039945 C

a score=1073444.000000
s hg38.chr15_KI270850v1_alt    221190 262 +    430880 tgattta---------------gggcaagttgcttgaggtctttgggcctctcttttca-----catctgt-------ataatagaggtgg---------------------------------------------------------tattttttgacttccatttgt-gaagtttaaat------------------------------------------------------gagattcgtta---ttgttgcttttatgtgaa-tccttagtacatggcctgctgca-aacacccaggacaccgaggaaatggtcgttgctgtt----------------TGATTTTCCTCATCCCCAGTCTCA-AGGGGAAGCCAGGCCAATGAGAAGAGCCACTTGCCATCAGGCTGTCCCTTTAGG
s panTro5.chr15              18031010 262 -  83230942 tgattta---------------cggcaagttgcttgaggtctttgggcctctcttttca-----catctgt-------ataatagaggtgg---------------------------------------------------------tattttttgacttccatttgt-gaagtttaaat------------------------------------------------------gagattcgtta---ttgttgcttttatgtgaa-tccttagtacatggcctgctgca-aacacccaggacaccgaggaaatggtcgttgctgtt----------------TGATTTTCCTCATCCCCAGTCTCA-AGGGGAAGCCAGGCCAATGAGAAGAGCCACTTGCCATCAGGCTGTCCCTTTAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76625040 262 +  99763055 tgattta---------------cggcaaactgcttgagctctttgggcctctcttttca-----catctgt-------aaaatagggggag---------------------------------------------------------tattgtttgacttccatttgt-gaagtttaaat------------------------------------------------------gagatTCCTTA---TGGTTGTTTTTATGTTAA-CCCCTAGTATGTGGCCTGCTGTA-AACACCCAGGATACCCAGGAAATGGTCATTGCTGTT----------------TGATTTTCCTGATCCGCATTCTCA-AGGGGAAGCTGGGCCAATGAGTACAGCCACTTGCCATCAGGCTGTCCCTATAGG
i panPan2.chr15             I 8 C 0
s gorGor5.CYUI01015946v1       319774 261 +    378907 tgattta---------------gggtaagtt-cttgaggtcttttggcctctcttttca-----catctgt-------ataatagaggtgg---------------------------------------------------------tattttttgacttccgtttgt-gaaatttaaat------------------------------------------------------cagatttgtta---ttgttgcttttatgtgaa-tccttagtacatggcctgctgca-aacacccaggacacccagaaaatggtCATTGCTGTT----------------TGATTTTCCTCATCCCCAGTCTCA-AGGGGAAGCCAGGCCAATGAGAAGAGCCACTTGCCATCAGGCTGTCCCTTTAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60389441 262 + 169600520 tgactta---------------tggcaaattgcttgagctctttgagcctgtcttttca-----catctgt-------aaaataggggtag---------------------------------------------------------tagtgtttgacttccatttgt-gaagtttaaat------------------------------------------------------gagattcctta---ttattgtttttatgttaa-tccttagtacatggcctgctgta-aacagccagtatactcaggaaatggtcattgctgtt----------------TGATTTTCCTCATCCCCAGTCTCA-AGGGGAAGCTGGGCCAATGAGTACAGCCACTTGCCATCAGGCTGTCCCTTTAGG
i rheMac8.chr7              C 0 I 1269
s macFas5.chr7               65341213 259 + 171882078 tgattta---------------gggcaagttgcttgaggtcttcaggcctctcttctca-----catctgt-------ataatagaggtgg---------------------------------------------------------tattttttgacttccatttgt-gaagttgtaat------------------------------------------------------gagatttgtta------tcgcttttatgtgaa-tccttagtacatggcctgCTTTA-AACACCCAGGACACCGAGGAAATGGTCATTGCTGTT----------------TGATTTTCCTCATCCCCAGTCTCA-AGGGGAAGCCAGACCAAAGAGAAGAGCCACTTGCCATCAGGCTGTCCCTTTAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5380641 262 -   6271500 tgattta---------------gggcaagttgcttgaggtcttcgggtctctcttttca-----catctgt-------ataatagaggtgg---------------------------------------------------------gatttttttacatctatttgt-gaagtttaaat------------------------------------------------------gagatTTGTTA---TTGTTGTTTTTATGAGAA-TCCTTAGTACATGGCCTGCTGTA-AACACCCAGGACACCCACGAAATGGTCACTGCAGTT----------------TGATTTTTCTCATTCCCAGTCTCA-AGGGGAAGCCAGACCAATGAGAAGAGTCACTTGCCATCAGGCTGTCCCTTTAGG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1839267 265 -   1987038 tgattta---------------tggcaaattgcttgagctctttgagcctgtcttttca-----catctgt-------aaaagaggggtag---------------------------------------------------------tagtgtttgacttccatttgt-gaagtttaaat------------------------------------------------------gagattccttattattgttgtttttatgttaa-tccttagtacatggcctgctgta-aacaaccagtatactcaggaaatggtCATTGCTGTT----------------TGATTTTCCTCATCCCCAGTCTCA-AGGGGAAGTTGGGCCAATGAGTACAGCCACTTGCCGTCAGGCTGTCCCTTTAGG
i cerAty1.NW_012002657v1    C 0 I 1217
s saiBol1.JH378108            5012522 265 -  54856640 cgattta---------------gggcaagtttcttgagctctttgggcctcacttttca-----cagctgt-------aaaatagaagtgg---------------------------------------------------------tattgtttgaattctattttt-gaagtttaaat------------------------------------------------------gagatTTGTGATTGTTGTTGTTGTTATGTGAA-TCTCTAGTACATGGCCTGCTGTA-AGTAGCCAGGACACCCAGGAAACGGTCGTTGCTGTC----------------TGATTTTCCTTATCCCCAGTCTCA-AGGGGAAGCCAGGCCAGTGAGAACAGCCACTTCCCATCAGCCTGTCCCTTCAGC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       641554 265 -   3745603 tgattta---------------gggcaagttgctggagctttttgggcctctcctttca-----catctgt-------aaaatagagatgg---------------------------------------------------------tattgtctgacttccatttgt-gaaggtgaaat------------------------------------------------------gagatTCGTTATTGCTGTTGCTTTTTTGTCAA-TCCCTAGTACGTGGCCCGCTGTA-AACACCCAGGGCACCCAGGAAATGGTCCTTGCTGTT----------------TGGTTTTCCTCATCCCCAGTCTCA-AGGGGAAGCCAGCCCAATGAGAACAGCCATTTGCTGTCAGGCTGTCCCTTTGGG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             412380 249 -  31380117 tgattta---------------gggcaaattgtttg--------gggcttctcttttca-----cacgtgt-------aaaataggggtaa---------------------------------------------------------tactgttttacttatacttatagaagtttaaat------------------------------------------------------gaggtttttgg---ttgctgtttttatattaa-ttctcagtaca-ggcatggtatagaata-----aacattccataaatggtagtcgctatt----------------TGATTTTTCTCATCTCCAGCCTC--AGGGGAAGTAAGGCCAGTGAGAATGGCCGCTTGCCATTAGGCTTTCCCTTTAAg
i otoGar3.GL873533          C 0 I 5
s canFam3.chr9               55236723 407 +  61074082 TGTCTTAACACTGGTGACACTGGAATGAGATGGTTGATTTTTTTTG---tttcttttaagggtttatttatttgagagagagcagggggaggggcaaaggaagagggagagagaatcctcaagcagactccctgctgagcacggagcctgatgtctggctggatcccat-gactctgagatcatgacctgagccggaagaactcaggagtcggacacttaaccaactaagctgtccagatgccccATTGATGTTGTTTTTATATTAA-TCCCT----TAGGGCCTGGTGTGGGATA-----AGCATTCAGTCAAGGGTAGTC-CTATTTGACATACTGACCTGGTGACTTTCCTCATCCCTGGCTTCAGGGGGGAAGCCAGG-CAGTGAGAATAGCCATCTGCCATCACACTGTCCCTATAGG
i canFam3.chr9              I 4 C 0
s dasNov3.JH564958             168656 263 +    584178 tgatttt---------------ggagaaattgtttaagatctttaggcctctgtttaca-----tgtctgt-------aaaacaggga------------------------------------------------------------taatgttttatttacacttgt-gaagtttaaag------------------------------------------------------gagtttctgta---------tttatatataaagtccttagtagagggtctgggacagagta-----aacattcagtaaatggtagttcctattTTAGCTATTGCCTAGGTGATTTTGCTCATTCCCAGCCTCA-AGGAGAAGCCAAGC---TGCTAACTGGCACTTGCCATCATTTTCTCCCTTTAGG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337329  50 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e nomLeu3.chr6              102175222   0 + 121039945 C

a score=47981.000000
s hg38.chr15_KI270850v1_alt    221452 19 +    430880 AGTCACTG---AAAGGGCCCCA
s panTro5.chr15              18031272 19 -  83230942 AGTCACTG---AAAGGGCCCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76625302 19 +  99763055 AGTCACTG---AAGGGGGCCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       320035 19 +    378907 AGTCACTG---AAAGGGCCCCA
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65341472 19 + 171882078 AGTTACTG---AAAGGACCCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5380903 19 -   6271500 AGTCACTG---AAAGTGCCCCA
i macNem1.NW_012011056v1    C 0 C 0
s saiBol1.JH378108            5012787 19 -  54856640 AGTCACTG---AAAGAGCCCCA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       641819 19 -   3745603 AGTCACTG---AAAGGGCCTCA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             412634 22 -  31380117 gggtatggtgcagagaaccctg
i otoGar3.GL873533          I 5 I 7428
s canFam3.chr9               55237130 19 +  61074082 AAGCACCA---AAAGAGACCCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             168919 18 +    584178 AAGTCTCA---AAAGAGCCca-
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1839532 1217 -   1987038 I
e rheMac8.chr7               60389703 1269 + 169600520 I
e nomLeu3.chr6              102175222  0 + 121039945 C

a score=14865.000000
s hg38.chr15_KI270850v1_alt    221471 4 +    430880 GGGT
s panTro5.chr15              18031291 4 -  83230942 GGGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76625321 4 +  99763055 Gggt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       320054 4 +    378907 GGGT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65341491 4 + 171882078 GGGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5380922 4 -   6271500 GGGT
i macNem1.NW_012011056v1    C 0 C 0
s saiBol1.JH378108            5012806 4 -  54856640 GCGT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       641838 4 -   3745603 GGCT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             420084 4 -  31380117 GGGA
i otoGar3.GL873533          I 7428 C 0
s canFam3.chr9               55237149 4 +  61074082 GGGT
i canFam3.chr9              C 0 I 4609
s dasNov3.JH564958             168937 4 +    584178 gggt
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1839532 1217 -   1987038 I
e rheMac8.chr7               60389703 1269 + 169600520 I
e nomLeu3.chr6              102175222 0 + 121039945 C

a score=3360.000000
s hg38.chr15_KI270850v1_alt    221475 1 +    430880 G
s panTro5.chr15              18031295 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76625325 1 +  99763055 g
i panPan2.chr15             C 0 I 1268
s gorGor5.CYUI01015946v1       320058 1 +    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65341495 1 + 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5380926 1 -   6271500 G
i macNem1.NW_012011056v1    C 0 C 0
s saiBol1.JH378108            5012810 1 -  54856640 T
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       641842 1 -   3745603 G
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             420088 1 -  31380117 G
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55241762 1 +  61074082 G
i canFam3.chr9              I 4609 I 7
s dasNov3.JH564958             168941 1 +    584178 g
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1839532 1217 -   1987038 I
e rheMac8.chr7               60389703 1269 + 169600520 I
e nomLeu3.chr6              102175222 0 + 121039945 C

a score=11912.000000
s hg38.chr15_KI270850v1_alt    221476 4 +    430880 GGAT
s panTro5.chr15              18031296 4 -  83230942 GGAT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       320059 4 +    378907 GGAT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65341496 4 + 171882078 GGAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5380927 4 -   6271500 GGAT
i macNem1.NW_012011056v1    C 0 C 0
s saiBol1.JH378108            5012811 4 -  54856640 GGAG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       641843 4 -   3745603 GGAT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             420089 4 -  31380117 GGAT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55241770 4 +  61074082 TGAT
i canFam3.chr9              I 7 C 0
s dasNov3.JH564958             168942 4 +    584178 tgat
i dasNov3.JH564958          C 0 I 3819
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76625326 1268 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1839532 1217 -   1987038 I
e rheMac8.chr7               60389703 1269 + 169600520 I
e nomLeu3.chr6              102175222 0 + 121039945 C

a score=418701.000000
s hg38.chr15_KI270850v1_alt    221480 201 +    430880 GGTGGGGAGATAAGAACCACGAGAGAAGTTGGCACAAAGGAGTTATGGGAAAAAGGGTCCAAGATAGGCAGAAAAGAAGCTTT-------TGCCAGTTGATGGGGGAAGAAAGGAAGTCAGAGGGCTTAGACAGTGAGGGGGGAC--AG-A--ACAT-CTCCATGT--GCA-CTCTC---ATCTCTTGGAGTCAGCAACAGGT-ATCTA-CGGGGAGGGCCG
s panTro5.chr15              18031300 204 -  83230942 GGTGGGGAGGTAAGAACCACGAGAGAAGTTGGCACAAAGGAGTTATGGGAAAAAGGGTCCAAGATAGGCAGAAAAGAAGCTTT-------TGCAGTTTGATGGAGG-AGAAA-GAAGTCAGAGCGCTTAGACAGTGAGGGGGGAC--AGTG--ACATCCTCCATGTG-GCACCTCTC---ATCTCTTGCAGTCAGCAA-AGGTAATCTATCGGGGAGGGCCG
i panTro5.chr15             C 0 I 1
s gorGor5.CYUI01015946v1       320063 201 +    378907 GGTGGGGAGATAAGAACCACGAGAGAAGTTGGCACAAAGGAGTTATGGGAAAAAGGGTCCAAGATAGGCAGAAAAGAAGCTTT-------TGCCAGTTGATGGGGGAAGAAAGGAAGTCAGAGGGCTTAGACAGTGAGGGGGGAC--AG-A--ACAT-CTCCATGT--GCA-CTCTC---ATCTCCTGCAGTCAGCAACAGGT-ATCTA-CGGGGAGGGCCG
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65341500 199 + 171882078 CGTGGGGAGATAAAAACCATGAGAGACGTTGGCACAAAGGAGTTATGGGACAAAGGGTGCAAGATAGGCAGAAAAGAAACTTT-------TGTCAGTTGATGGAGA-AGAAAGGAAGTCAGAGGGCTTAGACACTGAGGGG-GAC--AG-A--ACAT-CTCCATGT--GCA-CTCTC---ATCTCTTGTAGTCAGCAACAGGT-GTCTA-CGGGGAGGGCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5380931 200 -   6271500 GGTGGGGTGATAAAAACCATGAGAGAAGTTGGCACAAAGGAGTTATGGGACAACTGGTCCAAGATAGGTAGAAAAGAAATGTT-------TGTCAGTTGATGGGGA-AGAAAGGAAGTCAGAGGGCTTAGACACTGAGGGGCGAC--AG-A--ACAT-CTCCATGT--GCC-CTCTC---ATCTCTTGTAGTCAGCAACAGGT-GTCTA-TAGGGAGGGCCC
i macNem1.NW_012011056v1    C 0 C 0
s saiBol1.JH378108            5012815 198 -  54856640 GGTGGGGAGATAAGAACCATGAGAAAAGCCGGCACAAAGGGGTTATGGGACAAAGGGTCCGAGACAGGCAGAAGAGAAAATTT-------TGCCAGTTGATGGGGA-AGAAAGGAAGTCAGAGGGCTTAGAGACCGAGGGG-GAC--AG-A--ACAT-CT-CACGT--ACA-CTCTC---ATCTCTTGTAGTCAGAAACAGGT-GTTCA-CGCGGAGGGCCC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       641847 197 -   3745603 GGT-GGGAGATAAGAACCATGAGAGGAGCTGGCACAAAGCAGTTATGGGACAAAGGGTCTGAGAGAGGCAGAACAGAAAATGC-------TGCCAGCTGATGGGGA-AGAAAGGAAGTCAGA-GGCTTGGACACTGAGGGG-GAC--AG-A--ACAT-CTCCATGT--GCA-CTCTC---ATCTCTTGTAGTCAGCAGCAGGT-GGTCA-CAAGGAGGGCCC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             420093 202 -  31380117 GATGGAGAGATAAGAATGCTGAGA--AGTTGGTAGGAAGGGATTATGAGAGGAGGGGTCCAAGTTAGCCAGAAAAAAAAATTGATAGGGAAGAAAGTTGATGGGGA-AGAAAGGAAGTCACAGGGCTTAG---CTGTGAGGAGAC--AG-A--GCAT-CACTGAGT--AGA-CCCTC---ATCTCTTTTAGTCTACGTCCTAT-GTCAA-TGGAACAAGCCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55241774 180 +  61074082 GACGGGGGGCTAAGAACCAGGAGGAG---TGGCACAAAGGAG------------GGGTT--AGTTAGGCAGAAAAG------T-------TTGCAGCTGATGGGCA-GGATGAGGAGTCAGAGGGCTTAGGTACTGGGGCG-GGC--AG-AGTGCGC-CTCCATGTGAGCC-CTTTC---GTGTCTCCTAGTCTTCATCCTAC-ATCAA-TGGGGAGGGCCT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             172765 201 +    584178 GATAGGACGATAAGAACCACGGAA--AGGTGGCATAAGGGA-TTGTAAGAAGATAGGCCCAAATTTGGCATAAAATAAACTCT-------TGCCAGTTGGTGGGGA-AAAAAGGAAGTCAAACAGCTCAGGTGCTTTTGGG-GACAAAG-A--GCAT-CTCCATGT--GAG-ATCTTTCAATCTCTTCTAGTCTTCATCCTAC-TTCAA-TGGTGAGGGCCT
i dasNov3.JH564958          I 3819 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76625326 1268 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337329  50 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1839532 1217 -   1987038 I
e rheMac8.chr7               60389703 1269 + 169600520 I
e nomLeu3.chr6              102175222   0 + 121039945 C

a score=702482.000000
s hg38.chr15_KI270850v1_alt    221681 163 +    430880 TGCATCCTCTACTA--CCCTGCA-GGATCTGGAGGTAAGAGGCCCTGGGCCGAGGTGCAGTGACCC-TGCAGGCCAGCC-CTC-CAACCTCCTCCCACA-GCAGGGGCTTGTTGCCCCTCTGCCAGCTGAGGCAGCC------CACACACCCC---CACCAGCCCTAATGATTATTCTC
s panTro5.chr15              18031505 163 -  83230942 TGCATCCTCTGCTATCCCCTGGACGGATCTGGA---AAGA-GCCCTGGGCCGAGGTGCAG-GACCC-TGCAGGCCAGCCGCTCGCAACCTCCTCCAGCAGGCAGGGGCTTGTTGCCCCTCTG-CAGCTGA-GCAGCC-----GCACACACCCC---CACATCCGCTAATGATTATTCTC
i panTro5.chr15             I 1 C 0
s panPan2.chr15              76626594 169 +  99763055 TGCATCATCTGTTA--CCCTGAA-GGATCTGGAGGTAAGAGGCCCTGGGTCAAGGTGCAGTGACCC-TGCAGGCCAGCC-CTC-CAACCTCCTCTCACA-GCAGGGGCCGGGTGCCCCTCTGCCAGCTGAGACAGCCCGACAGCCCACACACA---CCCCAGCCCTAATGATTGTTCTT
i panPan2.chr15             I 1268 C 0
s gorGor5.CYUI01015946v1       320264 163 +    378907 TGCATCCTCTGCTA--CCCTGGA-GGATCCGGAGGTAAGAGGCCCTTGGCTGAGGTGCAGTGACCC-TGCAGGCCAGCC-CTC-CAACCTCCTCCCACA-GCAGGGGCTTGTTGCCCCTCTGCCAGCTGAGGCAGCC------CACACACCCC---CACCAGCCCTAATGATTGTTTTC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60390972 161 + 169600520 TGCATCATCTGTTA--CCCTGAA-GGATCTGGAGGTAAGAGGCCCTGGGCCGAGGTGCGGTGACCC-TGCAGGCCAGCC-CTC-CAACCTCCTCTCACA-GCAGAGGCTGGGTGCCCCTCTACCAGCTGAGACAACC------CCCACACA-----CCCCAGCCCTAATGATTGTTCTC
i rheMac8.chr7              I 1269 C 0
s macFas5.chr7               65341699 153 + 171882078 TGTGTCATCTTCTA--CCCTGAA-AGATCTAGAGGTAAGAGGCCCTGGGCCGAGGTTCAGTGACCC-TG---------------CAACCTCCTCCCACA-GCAGGGGCTGGTTGCCCCTCTGCCAGCTGAGACAGCC------CAGACACACCCCTCCCCAGCCCTAATGACTCTTCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5381131 166 -   6271500 TGTGTCATCTACTA--CCCTGAA-AGATCTAGAGGTAAGAGGCCCTGGGCCGAGGTTCAGTGACCC-TGCAGGCCAGCC-CTC-CAAGCTCCTCCCACA-GTAGGGGCTGGTTGCCTCTCTGCCAGCTGAGACAGCC------CAGACACACCCCTCCCCAGCCCCAATGATTGTTCTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1840749 161 -   1987038 TGCATCATCTGTTA--CCCTGAA-GGATCTGGAGGTAAGAGGCCCTGGGCCGAGGTGCGGTGACCC-TGCAGGCCAGCC-CTC-CAACCTCCTCTCACA-GCAGAGGCTGGGTGCCCCTCTACCAGCTGAGACAACC------CCCACACA-----CCCCAGCCCTAATGATTGTTCTC
i cerAty1.NW_012002657v1    I 1217 C 0
s saiBol1.JH378108            5013013 160 -  54856640 TGCGTCACGTACTG--CTCTGAA-AGATCTGCAGGTAAGAGGCCCTGCATCGAGGTGCAGTGATCC-TGCAGGCCAGCC-CTC-CAGCCT-CTTCCACA-GCAGAGGCTGGGTGCCCTTCTGCCAGCTGAGACAGGC------CCCATACG-----ACACAGCCCTAATGACTGTTCTC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       642044 161 -   3745603 AGCGCCATGTGTCA--CCTTGAA-AGATCCAGAGGTAAGAGGCCCTGAGCTGAGGTACAGTGACCC-TGCAGGCCAGCC-CTC-CACCCTCCTCCCACA-GTGGTGGCTGGGTGCCCCTCTGCCAGATGAGGCAGCC------CCCACACA-----CCCCAACCCTAATGATTGTTCTC
i aotNan1.NW_018511953v1    C 0 I 113
s otoGar3.GL873533             420295 157 -  31380117 TTCATCGTCCATTA--ACCTGAA-GGATTTGGAGGTAAATGGCCCTGAACTATGGCCCAGTGACCC-TGCAGGCCAGCC-CCC-TGAC---TTCCCACA-GTAGGGGCTGAGTTCCCCTCTGGCAGTTGAGATAGCC------CTTAGAT------CCTTAACCCTAATGATTGCTCTC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55241954 150 +  61074082 GGCATCTTCTGCTA--ACATAAA-GGATCTAGAGGTAAGTGGCACTAGACCATGGTCTCAGGACCC-TGCAGGCCAGCC-CCC---ATCTCCTCCCACA-GCGGGGGCTGGGTGCCCCGCTGCCAGCCCAGACAGCC--------------------CCCAACCCTAATGACTGCTCTC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             172966 162 +    584178 ---AACATCTGTTA--ACATGAA-GCATCTGGAGGTAAGTGGCCCTGGACTGTGGCCTGGTGACCCTTGCAGGCCAGTC-CCC-CCACCTCCTCCCACA-GTGGGGGCTGGGTGCCCCACTGCCAGTTGAGACAGCC------CAGACACACCC--CCCCAACCTTAACGATTGCTCTC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337329  50 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e nomLeu3.chr6              102175222   0 + 121039945 C

a score=455696.000000
s hg38.chr15_KI270850v1_alt    221844 121 +    430880 TCTACCCCTCCCCACAATCTTTCTC-CAACTCCTTCT----------CTCTGCATGCACCTCAGAGCCA-GTACCAAGAACTAGCAGTAGCCCTGGATTCAAG-CTCCGCAATAATCAGTCAACTC--ACTG-AAAA
s panTro5.chr15              18031668 123 -  83230942 CTTA-CCCTCCCC-CAATCTTCCTCGCAACTCCTTCT----------CTCTGCATGCCCTCAAGAGCCATGTACGAAGAACTAGCAGTGGCCCTGGATTCAAG-CTCCGC-ATAATCAGTCAACTCCAGCTGTAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76626763 121 +  99763055 TTTACCTCTCCCCACAATCCTCCTC-CAACTCCTCCT----------CTCTGCATGCGCCTCAGAGCCG-GTACCAAGAACTGGAAGTAGCCCTGGACTCAAG-CTCCATGACAGTCAATCAACTA--AATG-AAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       320427 121 +    378907 TCTACCCCTCCCCACAATCTTCCTC-CAACTCCTTCT----------CTCTGCATGCACCTCAGAGCCA-GTACCAAGAACTAGCAGTGGCCCTGGATTCAAG-CTCCGCAATAATCAGTCAACTC--ACTG-AAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60391133 121 + 169600520 TCCACCTCTCCCTGCAGTCCTCCTC-CAACTCATCCT----------CTCTATATGCGCCTCAGAGCCG-GTACCAAGAACTAGCAGTAGCCCTGGACTCAAA-CTCTGCGACAATCAATCACCTT--AATG-AAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65341852 122 + 171882078 TCTACCCCTCCCCGCAATCCTCCTC-CAACTCCTCCT----------CTCTGCATGCACCTCAGAGCCA-GTACCAAGAACTAGCAGGAGCCCCGGACTCAAAGCTCCACAATAATCAGTCAACTC--AGTG-GAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5381297 122 -   6271500 TCTACCGCTCCCCGCAATCCTCCTC-CAACTCCTCCT----------CTCTGCATGCACCTCAGAGCCA-GTATCAAGAACTAGCAGGAGCCCCGGACTCAAAGCTCCACAATAATCAGTCAACCC--AGTG-AAAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1840910 121 -   1987038 TCCACCTCTCCCTGCAGTCCTCCTC-CAACTCATCCT----------CTCTATATGCGCCTCAGAGCCG-GTACCAAGAACTAGCAGTAGCCCTGGACTTAAA-CTCTGCGACAATCAATCACCTT--AATG-AAAA
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5013173 119 -  54856640 TCTGCCTCCCCC--AAATCCTCCTC-CAACTCCTCCT----------CTCTGCATGCACCTCAGAGGCG-CTACCAAGAAACAGCAGTGACCCTGGAATGGAG-CTCCAGAACAGTCAGTCAACTG--AATG-ACAC
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             420452 118 -  31380117 TCTACCTCTCCCCCCACCCCTCCTC-CAAC---TGCT----------CTCTGCATGCGCCTCAGAGCCG-GTACCACGAGCTAGCAGTAGCCCTGGACTCCAG-CTATCTAACAAACAAACAACTC--AGTA-GCAA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55242104 129 +  61074082 TCTACCTCTCCC--CAACCCTCGTC-CAActcctcctcctcctcctcctcTGCATGCGCCTCAGAGCCG-GTACCAAGAGCTATCACTAGCCCTGGACTCCAG-CAATCTAACAAACAAACAACTC--AGTA-GCAA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             173128 123 +    584178 TCTACCTCTCCCC-CAACTCTCTTC-CCACTCCTCCTCCT-------CTCTGCATGCGCCTCAGAGCCG-ATACCAAGAGCTATCAGTAGCCCTGGATTCCAG-CAATCTAACAAACAATCAACTC--ATTA-ACAA
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       642205 113 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337329  50 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e nomLeu3.chr6              102175222   0 + 121039945 C

a score=312250.000000
s hg38.chr15_KI270850v1_alt    221965 77 +    430880 CATCAATTCACTGGTAAGAG-TCCAGT-GGGGTCCCCTGATTACA-GCTGGTCAATCCTGGACTCCAGTTTCCTCTTGGG
s panTro5.chr15              18031791 75 -  83230942 CAT-AATTCACTGGTAAGAGTTCCATT-GGGGTCCCCTGATTACA-GCT-GTCAATCCC-GACTCCAGTTTCCTCTTGGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76626884 76 +  99763055 CATAGAATCATTGATAAGAG-TCCAGT-GGGGTCCCGTGATTCCACGCT-GCAAATCCTGGGCTTTAG-TTCCCCTTGGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       320548 76 +    378907 CATCAATTCACTGGTAAGAG-TCCAGT-GGGGTCCCCTGTTTCCA-GCCGGTCAATCCTGGACTCCAGTTTCCTCTT-GG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60391254 77 + 169600520 TATAGAATCATTGGTAAGAG-TCCAGT-GGGGTCCCCTGATTCCATGCT-GCCAATCCTAGTCTTTAGTTTACCCATGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65341974 75 + 171882078 CATCCATTCACTGGGAAGAG-TCCAGT-GGCGTCCTCTGATTCCACGCT-GCCAATCCTGGACTC--GTTTCCCCTTGGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5381419 75 -   6271500 CATCCATTCACTGGGAAGAG-TCCAGT-GGCGTCCTCTGATTCCACGCT-GCCAATCCTGTATTC--GTTTCCCCTTGGG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1841031 75 -   1987038 CATAGAATCATTGGTAAGAG-TCCAGT-GGGGTCCCCTGATTCCATGCT-GCCAATCCTAGTCTT--GTTTACCCATGGG
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5013292 77 -  54856640 CATTCAGTTATTGGTAAGAG-TCCAGT-GGGATCCCCTGATGCCACACT-GCTGATCCTGGGCTCCAGTTTCCCCTAGGG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       642318 75 -   3745603 CATCAACTTATTGGTAAGAG-TCCAGT-GGGGT-CCCTGATTCCACGCT-GC-AATCCTGGGCTCCAGTTTCCCCTTGGG
i aotNan1.NW_018511953v1    I 113 I 1463
s otoGar3.GL873533             420570 78 -  31380117 AGTAGAGGAATTGGTAAGAG-TCCAGTGGGGGTCCCCTAATGCCATGTC-GCCCATCCTGGGCTGCACTTTTCCCTTGGG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55242233 77 +  61074082 GATAGAGGAATTGGTAAGAG-TCCAGT-GGGGTCCCCTGATTCCACACT-GCCAATCTGGGGCTCCAGTTTTTCCCTGGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             173251 77 +    584178 GATAGAGGAATTGGTAAGAG-TCCAGT-GGGGTCCCCTGAGTCCATGCT-GCCAATCCTGGGCTCCAATTTCCCCTTGGG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e nomLeu3.chr6              102175222  0 + 121039945 C

a score=1564227.000000
s hg38.chr15_KI270850v1_alt    222042 485 +    430880 GCCCTGAAGAA-AGGGGCTAGGGGCCCCTGATGCCAAGGGCAAA-TGGGGAGCT----GGGCACCCAGGTCTCACCTGGAGGGAC-CCCAGAGCACAGAACATGCAGCAT-GGCTC-TTCTG-CACTGCCCTCTTTGCTGACTCTCTCT-TCTCCAGACACCCCTGCTCTAGTCCTTGCCACA----CATGCCCTGGGGTTGTCA-CCTCTCTG-GGAAGCACTAGCCTgactggttgttagggg-tccatattcct--gccctgcctcagtccctaatttgct-----ttttgagtctggacaagccatctctcctctttatgctcgtgtttctgg--aggaggt-agaga-------gtat-caaaggtctcggttagctctgaaagtcagagattTAAAGGcccc-tagaatggaaagctcaggg--cgaagggctcctgtctgtcctttgctgttttatatctctgc-tatgaagaactgtacctggcctg-ta---------------catgctcagtaaatgtttg-ttgaatgaa
s panTro5.chr15              18031866 487 -  83230942 GCCCTGAAGAATAGGGGCTAGGGGCCCCTGATGCCAAGGGCAAATTGGGGAGCT-----GGCACCCAGGTCTCGCCTGGAGGGACGCCCCCAGCACAGAACATGCAGCATAGGCTC-TTCTG-CACTG-CCTCTTTGCTGAAACTCTCTCTCTCCAGACACACCCGCTCTAGTCCTTGCCACA---TCATGCCCTGGGG-TGTCA--CTTTCCG-GGAAGCACTAGCCTGACTGGTTGTCAGGGG-TCCATATTTCTGGGCTCTG-CTCAGT-CCTATTTTGGC-----TTTTTGGTCTGGACAAGTCATCTCTCCTCTTATGGCTCGTGTTTCTGGTAGGGAGGC-AGAGA-------GTAA-TCAAGGTCTCGGTTAGCTCTG-AAGTCAGAGATT--AAGGcccc-tagaatggaaa-ctcaggc--ccaagggctcctgtctgtcctttgctgttttatatctctgcttatgaagaactgtacctggcctgtta---------------catgctc-gtaaatgtttgtttgaatgaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76626960 478 +  99763055 GCCCTGAAGAA-AGGAGCTGGGGGCCCCTGGTGCCAAGGACAAA-TGGGGAGCTG---GAGCACCCAGGCCTCACCTGGAGGGAC-CCCAGAGCAAGGAGCATGCAGCAT-GGCTC-TTCTGTCACTGCCCTCTTTGCCGA--CTCTCT-TCTCCAG--ACCCCCACTCCAATCCTTGCCACA----CATGCCCTGGGGTTGTCA-CCTCTCAG-GGAAGCACTAGCCTgactggttgtcaggggccccgtatttct--gccctgactcggtccctaatttgc-------tttgagtctggaaaagccacctctcctccttgggctcatatttctgg--aggaggt---aaa-------gcat-caaaggtctctgttagctctgaaagtctgagattTAAAGGcccc-tagaatggaaacctcaggg--ccaagggctcctgtctgtccttttccatcctata--tctgc-tgtgaagaaccataactgtcctg-ta---------------tgtgctcagtaactgtttg-tggaatgaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       320624 483 +    378907 GCCCTGAAGAA-AGGGGCTAGGGGCCCCTGATGCCAAGGACCAA-TGGGGAGCTG---GGGCACCCAGGCCTCACCTGGAGGGA--CCCAGAGCACAGAACATGCAGCAT-GGCTC-TTCTG-CACTGCCCTCTTTGCTGA--CTCTCT-TCTCCAGACACCCCTGCTCTAGTCCTTGCCACA----CATGCCCTGGGTTTGTCG-CCTCTCCG-GGAAGCACTAGCCTgactggttgtcagggg-cctgtatttct--gccctgcctcagtccctaatttgct-----ttttgagtctggacaagccatctctcctccttaggctcgtgtttctgg--aggaggttagaga-------gtat-caaaggtctcggttagctctgaaagtcAGAGATTTAAAGG-CCc-tagaatggaaacctcaggg--ccaagggctcctgtctgtcctttgctgtcttatatctctgc-tatgaagatctgttcctggcctg-ta---------------catgctcagtaaatgtttg-ttgaatgaa
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60391331 484 + 169600520 GCCCTGAAGAA-AGGGGCTGGGGGCCCCTGGTACCAAGGGCAAG-TGGGAAGCTG---GAGCACCCAGGCCTCACCTGGAGGGAC-TCCAGAGCAAGGAGCATGTAGCAT-GGCTC-TTCTGTCGCTGCCCTCTTTGCCGACTCTCTGT-TCTCCAGACACCTCTGCTCCAGTCCTTGCCACA----CACACCCTAGGGTTGTCA-CCTCTCAG-GGAAGCACTAGCCTgactggttgtcaggggccccgtatttct--gccctgactcagtcctgaatttgct-----ctttgagtctggacaagtcacctctcctccttgggctcatgtttctgg--aggaggt---aga-------gcat-caaaggcctctgttagctctgagagtctgagattTAAAGGcccc-tagaatggaaacctcatgg--ccaagggctcctgtctgtccttttccatcctatattt--gc-catggagaaccatacctggcccg-ta---------------tgtgctcagtaagtgtttg-ttgaatgaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65342049 479 + 171882078 GCCCTGAGGAA-AGGGGCT-GGGGCCCCTGGTGCCATGGGAAAA-TGGGGAGCTG---GGGCACCCAGGCCTCACCTGGATGGAC-CCCAGAGCACAGAACGTGCAGCAT-GGCTC-TTCTG-CACTGCCCTCTTTGCTGACTCTCTCT-TCTCCAGACACCCCTGCTCGAGTCCTTGCCACA----CACGCCCTGGGGTTCTTC-CCTCTCAG-GGAAGCACTAGCCTGTT----TGTCAGGGT-CCCGTATTTCT--GTCCTGACTCAGTCCCTAATTTGCT------TTTGAGTCTGGACAAGCCTTCTCTCCTCCTTGGGCTCGTGTTTCTGG--AGGAGGT---AGA-------GAGTATCAAGGTCTCTGTTCGCTCTGGGAGTCCGAGATTTAAAGGcccc-tagaatggaaacctcaggg--ccaagggctcctgtctgtccttttctgtcttctatctccgc-tgtgaagaaccacacctggcctg-ta---------------ggtgctcagcacatgtttg-ttgaatgaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5381494 473 -   6271500 GCCCTGAGTAA-AGGGGCTAGGGGCCCCTGGTGCCATGGGAAAA-TGGGGAGCTG---GGGCACGCAGGCCTCACCTGGATGGAC-CCCAGAGCACAGAACGTGCAGCAT-GGCTC-TTCTG-CACTGCTCTCTCTGCTGA-------T-TCTCCAGACACCCCTGCTTGAGTCCTTGCCACA----CACGCCCTGGGGTTGTTG-CCTCTcag-ggaggcactagcctgac----tgtcagggg-cctgtatttct--accctgactcagtccctaatttgct------tttgagtctggacaagccttctctcctccttgggctcgtgtttcTGG--AGGAGGT---AGA-------GAGTATCAAGGTCTCTGTTAGCTCTGGGAGTCCGAGATTTAAAAGcccc-tagaatggaaacctcaggg--ccaagggctcctgtctgttcttttctgtcttttatctccgc-tgtgaagaaccatacctggcctg-ta---------------ggtgctcagtagatgtttg-ttgaatgaa
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1841106 484 -   1987038 GCCCTGAAGAA-AGGGGCTGGGGGCCCCTGGTACCAAGAGCAAA-TGGGAAGCTG---GAGCACCCAGGCCTCACCTGGAGGGAC-TCCAGGGCAAGGAGCATGTAGCAT-GTCTC-TTCTGTCGCTACCCTCTTTGCCGACTCTCTGT-TCTCCAGACACCTCTGCTCCAGTCCTTGCCACA----TACACCCTAGGGTTGTCA-CCTCTCAG-GGAAGCACTAGCCTgactggttgtcaggggccccgtatttct--gccctgactcagtcctgaatttgct-----ctttgagtctggacaagtcacctctcctccttgggctcgtgtttctgg--aggaggt---aga-------gcat-caaaggcctctgttagctctgagagtctgagattTAAAGGcccc-tagaatggaaacctcatgg--ccaagggctcctgtctgtccttttccatcctgtattt--gc-catggagaaccgtacctggcccg-ta---------------tgtgctcagtaagtgtttg-ttgaatgaa
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5013369 477 -  54856640 GCCCTGTATAA-ATGGGATAGTGGACCCTGGTGCCAAGGGCAAA-TGGGGAGCTG---GGGCACCCAGGCCTCACCTGGAGGGA--CCCACAACA-GGGACATGCAGCAT-GGCTC-TTCTGTTGCTGCCCTCTTTGCCGA----CTCT-TCTCCAGACACCCCTGCTCAGGTCTTTGGCACA----CATGCTGTGGGGCTGTCG-CCTCTCAG-GGAATTGCTAGCCTgactggtggtcaggggccctgtattcct--gctgtgactcggtccctaatttgct-----atttgactctgaacgagccgcctctcctccttgggctcctgtttccac--aggaggt---aga-------aaat-cagaggtctctgtcagctctgagagtcggagattTAAAGGccccttagaatggaaacctcaggg--ccaagggctcctgtc----ctttgctgtcctgcatctctgc-tgtgaagaaccgtacctggccca-ta---------------tctgctccgtaaatattta-tggaatgaa
i saiBol1.JH378108          C 0 M 3869
s otoGar3.GL873533             420648 449 -  31380117 GCTGTGAAGAA-AGAAGCTGGGGTCCCCTGGTGTCAAGGGAGAA-TGGGT-GCTGGGTGGGTGGCTAGGCTTCAGCTGGAGGCGA-CCCTGAGTACAGAGCATGCCGCAT-GGCTC-TT----------------TGCCTACTCTCTCT-TCTCCAGATGCCCCTGCTTGGGTCCTTACAACA----CTAGCCCCGGGGTTGTTAACCTCTTGG-GGAAAAACTAGCTTAAC---TTGTAAGAGGCCCTATGTTTTT---------CTCTGTC-----------------TTtgattttagataagtcatctctcctcct-gggcttgagtttccta--agaaggt---gga-------attagcaaaggtctcttttagctctgaaaatcaaagattTCTAGGccca-c----tagaaacaacaggg--taaagggat-ttatctgtccttttcatttctgtgtccctgt-gattaagagtagtagcaggcctg-tagtc------------tgtgctcagtaaatatgtg-ttgaatgaa
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55242310 440 +  61074082 GCTCTGAAGAA-AGGGGCTGGGGGACCCTGGTGCTAAGGGAGAA-TGGGGTGTCG---GGGGGTTTGAGTCTCAGGTGGAGGGAC-CCCAGAGCA-------TGCGGCAT-GGCTC--TCTGTGGCTGCCTTCTTTGCCTC-CTTCTGT-TCTCCGGACACCCCTGCTTGAGTCCTTTCCATA----CTTGCCCCAGGGCTGTAG-CCTCTGga-ggaagcactggcttggctggt-------------gtgctcct--gccctgacccaacccctaatttgctccat-ctttgaacttggatgagtcacctttcctctctgggcttcagtctcctg--aggaggt---agaattagaggtgt-ccaaggtcccctttagctcagagaatcAG-----------------------------------------------------gtccttctcattcctgtatccctgc-tattaagaacagaacctggcctg-tgggtacttaggcccagggtgctcagtaaatacttg-ttgaatgaa
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             173328 486 +    584178 GCTCTGAAGAA-AGGGGCTGGGGGTCCCTGGTACCAAGGGAGAG-TGGAGTGCC----GGGGGCCTACGTCTCAGCTGGAGGGAC-CCCAGAGCACTGAGCACGCAGCCT-GGTGCTTTCTCTTGCTGCTCTCCTGACCCA--CTGTCT-TTTCCAG-TGGCACTGCTC----TCCTGACCCACTGTCTTGCCCTGGCGCTGTGG-CCTCTCAATAGAAGCCCTAGCCTGCctggttgtcaggagccctgtgtctca--gccctgacttagtgcctaatttgttgcttggtttcactttggacaagtcacttctcttcactggccttcagttgcctg--aaggagt---aga-------a----ttacggtatctttgagctcTAAAAAGCAAAGACTGAAAGGTCTGTtagaatg------ttagggaatgtggggatcttgtctatcctttgcattcctctgtccctgc-tagtaagaatagtacccagccca-tagta------------tatgctcagtaaatctttg-ctgaatgaa
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       642393 1463 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337329  50 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e nomLeu3.chr6              102175222   0 + 121039945 C

a score=172014.000000
s hg38.chr15_KI270850v1_alt    222527 64 +    430880 tgCA-CGTTTCTAAATCA----CAAACTGGCAGAA-GGGGGGTGG----GCC----TTTC----TCAAACTCTGTCTCTGGA
s panTro5.chr15              18032353 64 -  83230942 tgcatCGTTTCTAAATCA---GCAAACTGGCAGAA-GGGGGG-GG----GCT----TTTC----T-AAACTCTGTCTCTAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76627438 61 +  99763055 GGCA-CCTTTCTAAATCA----CAAGCAGGCAGAA-GGGT---GG----GCC----TTTC----TGAGTCTCCGTCTCTAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321107 64 +    378907 tgCA-CCTTTCTAAATCA----CAAGCTGGCAGAA-GGGAGGTGG----GAC----TTTC----TCAAACTCTGTCTCTAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60391815 61 + 169600520 cgCA-CCTTTCTAAATAA----CAAGCTGGCAGAA-GGGT---GG----GCT----TTTC----TCAGACTCCGTCTCTGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65342528 62 + 171882078 cgCA-CCTTTCTAAATCA----CAAGCTGGCAGGACGGGG---GG----GCC----TTCC----TCAAACTCTGTCTCTAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5381967 62 -   6271500 cgCA-CCTTTCTAAATCA----CAAGCTGGCAGGACGGGG---GG----GCC----TTCC----TCAAACTCTGTCTCTAGA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1841590 61 -   1987038 cgCA-CCTTTCTAAATAA----CAAGCTGGCAGAA-GGGT---GG----GCT----TTTC----TCAGACTCCGTCTCTGGA
i cerAty1.NW_012002657v1    C 0 C 0
s otoGar3.GL873533             421097 65 -  31380117 tgTA-CCCTCCTAAATCA----CAAGCTGGCAGAA-GGGT---AGTCTTTCT----TTCC----TCAAACTCTATTTCAAGA
i otoGar3.GL873533          C 0 I 6282
s canFam3.chr9               55242750 65 +  61074082 AGCA-CCCTTCCAAATCA----CGAGCTACCAGAA-GGGT---AG----TCTCTTGCTTC----TCAACTCCTGTTTCTGGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             173814 69 +    584178 tgCG-CCCTTTCAAATCGTGAGTGAGCTGGCAGGT-GGGT---TG----TCT----TTCCCTTTTCAGACTCCGTTTCTAGA
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       642393 1463 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e nomLeu3.chr6              102175222  0 + 121039945 C
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=4500.000000
s hg38.chr15_KI270850v1_alt    222591 1 +    430880 G
s panTro5.chr15              18032417 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76627499 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321171 1 +    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60391876 1 + 169600520 G
i rheMac8.chr7              C 0 I 2358
s macFas5.chr7               65342590 1 + 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5382029 1 -   6271500 G
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1841651 1 -   1987038 G
i cerAty1.NW_012002657v1    C 0 I 2338
s canFam3.chr9               55242815 1 +  61074082 G
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             173883 1 +    584178 G
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       642393 1463 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e otoGar3.GL873533             421162 6282 -  31380117 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e nomLeu3.chr6              102175222 0 + 121039945 C
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=2800.000000
s hg38.chr15_KI270850v1_alt    222592 1 +    430880 G
s panTro5.chr15              18032418 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76627500 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321172 1 +    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65342591 1 + 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5382030 1 -   6271500 G
i macNem1.NW_012011056v1    C 0 C 0
s canFam3.chr9               55242816 1 +  61074082 G
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             173884 1 +    584178 G
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       642393 1463 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e otoGar3.GL873533             421162 6282 -  31380117 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1841652 2338 -   1987038 I
e rheMac8.chr7               60391877 2358 + 169600520 I
e nomLeu3.chr6              102175222 0 + 121039945 C
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=5576.000000
s hg38.chr15_KI270850v1_alt    222593 2 +    430880 TT
s panTro5.chr15              18032419 2 -  83230942 TT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76627501 2 +  99763055 TT
i panPan2.chr15             C 0 I 2449
s gorGor5.CYUI01015946v1       321173 2 +    378907 TT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65342592 2 + 171882078 TT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5382031 2 -   6271500 TT
i macNem1.NW_012011056v1    C 0 C 0
s otoGar3.GL873533             427444 2 -  31380117 TC
i otoGar3.GL873533          I 6282 C 0
s canFam3.chr9               55242817 2 +  61074082 TT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             173885 2 +    584178 TT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       642393 1463 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1841652 2338 -   1987038 I
e rheMac8.chr7               60391877 2358 + 169600520 I
e nomLeu3.chr6              102175222 0 + 121039945 C
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=4491.000000
s hg38.chr15_KI270850v1_alt    222595 2 +    430880 CA
s panTro5.chr15              18032421 2 -  83230942 CA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76629952 2 +  99763055 CA
i panPan2.chr15             I 2449 C 0
s gorGor5.CYUI01015946v1       321175 2 +    378907 CA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60394235 2 + 169600520 CA
i rheMac8.chr7              I 2358 C 0
s macNem1.NW_012011056v1      5382033 2 -   6271500 TA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1843990 2 -   1987038 CA
i cerAty1.NW_012002657v1    I 2338 C 0
s otoGar3.GL873533             427446 2 -  31380117 TA
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958             173887 2 +    584178 TA
i dasNov3.JH564958          C 0 I 5287
e aotNan1.NW_018511953v1       642393 1463 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55242819 0 +  61074082 C
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e macFas5.chr7               65342594 0 + 171882078 C
e nomLeu3.chr6              102175222 0 + 121039945 C
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=7395.000000
s hg38.chr15_KI270850v1_alt    222597 4 +    430880 C--CAG
s panTro5.chr15              18032423 6 -  83230942 CGGCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76629954 4 +  99763055 C--CAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321177 4 +    378907 G--CAG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60394237 4 + 169600520 C--CAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65342594 3 + 171882078 ---CAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5382035 4 -   6271500 C--CAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1843992 4 -   1987038 C--CAG
i cerAty1.NW_012002657v1    C 0 C 0
s otoGar3.GL873533             427448 4 -  31380117 C--CAG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55242819 3 +  61074082 ---TAT
i canFam3.chr9              C 0 C 0
e aotNan1.NW_018511953v1       642393 1463 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             173889 5287 +    584178 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e nomLeu3.chr6              102175222 0 + 121039945 C
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=5500.000000
s hg38.chr15_KI270850v1_alt    222601 1 +    430880 C
s panTro5.chr15              18032429 1 -  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76629958 1 +  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321181 1 +    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60394241 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65342597 1 + 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5382039 1 -   6271500 C
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1843996 1 -   1987038 C
i cerAty1.NW_012002657v1    C 0 C 0
s otoGar3.GL873533             427452 1 -  31380117 C
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55242822 1 +  61074082 C
i canFam3.chr9              C 0 I 4004
s dasNov3.JH564958             179176 1 +    584178 C
i dasNov3.JH564958          I 5287 C 0
e aotNan1.NW_018511953v1       642393 1463 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e nomLeu3.chr6              102175222 0 + 121039945 C
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=286723.000000
s hg38.chr15_KI270850v1_alt    222602 114 +    430880 CC-CTCCCTCCAGGACC--------CTTTTCCCCCTTTGCTTTGGGCAGGTTCG--CAC-ATCTAAGGAGGAGAAGAAGCATGAGATACATCTGGTACAGAAGCTTGGGAGGAGCTTGTTCAAACT
s panTro5.chr15              18032430 109 -  83230942 CCGCTCCCTCC---GCC--------CTT---CCCCCTTGCTTT-GGCAGGTTCGGCGACTATCTAAGATGGAGAAG-AGCATGAGATACATCGGGTACAG-AGCTTGGAGGCAGCTTGTCATAACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76629959 112 +  99763055 CC-CTCTCTCCAGGGCC--------CTTT--CCCCTGTGCTTTCGGCAGGCTCG--CAC-ATTGAAGGAAGAGAAGAAGCGTGACATACATCGGATACAGGAGCTGGAGAGAAGCTTTTCTGAACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321182 104 +    378907 CC-CTCTCTCCAGGGCC--------CTCTCCCCCCTGTGCTTTGGGCAGGTTCG--CAC-ATCAAAGGAGGAGAAGAAGCATGAGATACATCGGGTACAGAAGCTTGGGGGGTACC----------
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60394242 110 + 169600520 CC-CTCTCTCCAGGGCC--------CTTCC-CCTCTGTGCTTTGGGCAGGCTTG--CAC-ATTGAAGGAGG---AGAAGCGTGACATACATCGGATACAGGAGCTGGAGAGGAGCTTGTCCGAACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65342598 113 + 171882078 CC-CTATCACCAGGGCC--------CTTTC-GCCCTGTGCTTTGGGCAGGTTCA--CAC-ATTGAAGGAGGAGAAGAAGCGTGAGATACATCGGGTACAGAAGCTTGGGAGGAGCTTGTTCAAACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5382040 113 -   6271500 CC-CTATCACCAGGGCC--------CTTTC-ACCCTGTGCTTTGGGCAGGTTCG--CAC-ATTGAAGGAGGAGAAGAAGCGTGAGATACATCGGGTACAGAAGCTTGGGAGGAGCTTGTTCAAACT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1843997 110 -   1987038 CC-CTCTCTCCAGGGCC--------CTTCC-CTTCTGTGCTTTGGGCAGGCTTG--CAC-ATTGAAGGAGG---AGAAGCGTGACATACATCGGATACAGGAGCTGGAGAGGAGCTTGTCCGAACT
i cerAty1.NW_012002657v1    C 0 C 0
s otoGar3.GL873533             427453 112 -  31380117 CC-CTCTCTCTGTGGTT--------CTTT--GCCCTGTGCTCTGAACAGATGCG--CAT-ATTGAAGGAGGAGAAGGAGCAGAGTGTGACTCAGGTGCGGGAGCTAGAGACCAGCTTGGCTGAACT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55246827 113 +  61074082 CC-CCCACCCATGTACC--------CATCC-CCCCTGTGATTTGGGCAGATGCA--CAG-ATTGAGGGAAGAGAAGGAGCACAGCATGAGTCAGGTGCAGGAGTTGGAGGCCAACTTGGCTGAACT
i canFam3.chr9              I 4004 C 0
s dasNov3.JH564958             179177 121 +    584178 CC-CTTTCCTCAATATCCATATATTCCTTC-TCCCTGTGCTTTGGACAGATGCA--AAC-ACTGAGGGAGGAGAAGGAGCATAGCATGTGTCAGGTGCAGGAACTGGAGACCAGTTTGGCTAAACT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       642393 1463 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337329  50 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e nomLeu3.chr6              102175222   0 + 121039945 C
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=300490.000000
s hg38.chr15_KI270850v1_alt    222716 79 +    430880 CAAAAACCAGACGGGTAA-GA-TGGGGCTGGCATGACCTGGCAGCTGGACTGGCATTAGAGGGCT-GTGGGGGTGACTTAGA
s panTro5.chr15              18032539 81 -  83230942 CAAAACCAGGACGGGTAATGATTGGGGCTGGCATGACCTGGCAGCAGGACTGGCATTAGAGGGCT-GTGAGGGTGACTTAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76630071 79 +  99763055 GCAAAACCAGATGGGTAA-GA-TGGGACTGGTGTGACCTGGGAGCAGGACTGGCATCAGAGGTCT-GTGGGGGTGGCTTAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321286 77 +    378907 --AAAACCAGACGGGTAA-GA-TGGGGCTGGCATGACCTGGGAGAAGGACTGGCATCAGAGGGCT-GTGGGGGTGACTTAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175222 79 + 121039945 CAAAAACTAGATGGGTAA-GA-TGGGACTGGTGTGACCTGGGAGCAAGACTGGCATCAGAGGGCT-GTGGGGGTGACTTAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60394352 79 + 169600520 CAAACCCCAGATGGGTAA-AA-TGGGGCTGGTGTGACGTGGGAGCAGGACCAGCATCAGAGGACT-GTGGGGGTGGCTTAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65342711 79 + 171882078 CAAACACCAGAGGGGTAA-GA-TGGGGCTGGCGTGACCTGGGAGCAGGACCGGCATCAGAGGGCT-GTGGGGGTGGCTTAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5382153 79 -   6271500 CAAACACCAGAGGGGTAA-GA-TGGGGCTGGCATGACCTGGGAGCAGGACTGGCATCAGAGGACT-GTGGGGGTGGCTTAGA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1844107 79 -   1987038 CAAACCGCAGATTGGTAA-AA-TGGGGCTGGTGTGACGTGGGAGCAGGACCAGCATCAGAGGACT-GTGGGGGTGGCTTAGA
i cerAty1.NW_012002657v1    C 0 C 0
s otoGar3.GL873533             427565 77 -  31380117 GAGGAACCAGACAGGTAA-GC-TGGGGTTCAGGGGACCTGGGAGGAGGATT-GTGTCGGAGCACT-GTGA-GGTGGCTAGGA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55246940 79 +  61074082 GAAGAACCAGATAGGTAA-GC-TGAGGCAGGAG-GATCTGGGAGCAGGATTGGTGCCAGAGGGCTGGTGAGGATGCCTTCAA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179298 80 +    584178 GAAGAATGAGACAGGTAT-GC-TGGGTCTGGAGTAATCTGAGAGCAGAAGTGGTGTCAGAGGGCTGGTGAGGATGGCTTAGA
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       642393 1463 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=192391.000000
s hg38.chr15_KI270850v1_alt    222795 42 +    430880 ATGCCCCAGGGAGGTGGGTG-GATGGAAGGGCTTTGA-GGCAGA-
s panTro5.chr15              18032620 43 -  83230942 ATG-CCCAGGGAGGTGGGTGTGATGGAAGGGCTTTGAGGGCAGA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76630150 42 +  99763055 ATGCCCCAGGGAGGTGGGTG-GATGGAAGGGCTTTGA-GGCAGA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321363 42 +    378907 ATGCCCCAGGGAGGTGGGTG-GATGGAAGGGCTTTGA-GGCAGA-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175301 42 + 121039945 ATCCCCCAGGGAGGTGGGTG-GGTGGAAGGGCTTTGA-GGCAGA-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60394431 42 + 169600520 ATGCCCCAGGGAGGTGGGTG-GATGGAAGGGCTTTGA-GGCAGA-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65342790 42 + 171882078 ATGCCCCAGGGAGGTGGGTG-GATGGAAGGGCTTTGA-GGCAGA-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5382232 42 -   6271500 ACGCCCCAGGGAGGTGGGTG-GATGGAAGGGCTTTGA-GGCAGA-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1844186 42 -   1987038 ATGCCCCAGGGAGGTGGGTG-GATGGAAGGGCTTTGA-GGCAGA-
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       643856 41 -   3745603 ATGCCCCA-GGAGGTGGGTG-GCTGGAAGGTCTTTGA-GGCAGA-
i aotNan1.NW_018511953v1    I 1463 I 102
s otoGar3.GL873533             427642 42 -  31380117 ATGCCCTCAGGAGGTAGAAA-AATAGCAGAGCTTTGG-GGCAAA-
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247019 42 +  61074082 ATGCCCTAAGGATGTGGGTG-GATGGAAGGGGACTGT-GGCCCA-
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179378 31 +    584178 ATGTCTGTGAGAGGTGGTGA-------------TTAT-GGCCAAG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=112300.000000
s hg38.chr15_KI270850v1_alt    222837 25 +    430880 GGGAAAGAGGTCTGT-GCCAGGGGA-g
s panTro5.chr15              18032663 23 -  83230942 -GGAAAGAGGTCTGT--CCAGGGGA-G
i panTro5.chr15             C 0 I 18
s panPan2.chr15              76630192 25 +  99763055 GGGAAAGAGGTCTGT-GCCAGCAGA-T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321405 25 +    378907 GAGAAAGAGGTCTGt-gccaggaga-c
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175343 25 + 121039945 GGGAAAGAGGTCTGT-GCCAGGAGA-C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60394473 25 + 169600520 GGGAAAGAGGTCTGt-gccaggaga-c
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65342832 25 + 171882078 GGGAGAGAGGTCTGT-GCCAGGAGA-C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5382274 26 -   6271500 GGGAGAGAGGTCTGT-GCCAGGAGAGC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1844228 25 -   1987038 GGGAAAGAGGTCTGt-gccaggaga-c
i cerAty1.NW_012002657v1    C 0 C 0
s otoGar3.GL873533             427684 25 -  31380117 GGGAAAGAGGTCTGT-GCTAGGAGG-T
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247061 25 +  61074082 GGGAAAGAGGTCCGT-ACTAGGAGT-T
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179409 26 +    584178 GGGAAAgagttctgttaccaggagt-t
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       643897 102 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=27914.000000
s hg38.chr15_KI270850v1_alt    222862 14 +    430880 -------------------------gacaagtcttgtca
s panPan2.chr15              76630217 14 +  99763055 -------------------------GGCAAGTTTTGTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321430 14 +    378907 -------------------------ggcaagtgttgtca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175368 14 + 121039945 -------------------------ggcaagtcttgtca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60394498 14 + 169600520 -------------------------tgcaagttttgtca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65342857 14 + 171882078 -------------------------TGCAAGCCTTGTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5382300 14 -   6271500 -------------------------TGCAGGCCTTGTCA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1844253 14 -   1987038 -------------------------tgcaagttttgtca
i cerAty1.NW_012002657v1    C 0 C 0
s otoGar3.GL873533             427709 14 -  31380117 -------------------------GGCAAGTCTCGTGT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247086  9 +  61074082 -------------------------GGCCAGGTT-----
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179435 39 +    584178 ggcactgacttactatgtgacctttggcaagtcttataa
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       643897 102 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M
e panTro5.chr15              18032686 18 -  83230942 I

a score=192839.000000
s hg38.chr15_KI270850v1_alt    222876 60 +    430880 tctccatg-agcctcagtgtccccatcagtaaagaggga--gGAGTGCCC-ATTGTCACCCACC
s panTro5.chr15              18032704 60 -  83230942 CCTCCATGCAGCCTCAGTGTCCCCATCAGTAAAGTGG----CGAGTGCCCTATTGTCCGCCACC
i panTro5.chr15             I 18 C 0
s panPan2.chr15              76630231 59 +  99763055 TCTCCAT--AGCCTCAGGGTCCCCATAAGCAAAAAGGGA--GGAGTGCTC-GTTGTCAGCCACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321444 60 +    378907 tctccatg-agcctcagtgtccccatcagtaaagaggga--gGAGTGCCC-ATTGTCAGCCACC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175382 60 + 121039945 tctccatg-agcctcagtgtccccatcagtaaagaggga--gGAATGCCC-GTTGTCAGCCACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60394512 60 + 169600520 tctccatg-agcctcagggtccccatcagcaaagaggga--ggagtgCCC-ATTGTCAGCCACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65342871 60 + 171882078 TCTGCTTG-AGCCTTGGTGTCCCCATCAGCAAAGAGGGA--GGAGTGCCC-ATTGTCAGCCACC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5382314 60 -   6271500 TCTGCTTG-AGCCTTGGTGTCCCCATCAGCAAAGAGGGA--GGAGTGCCC-ATTGTCAGCCACC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1844267 60 -   1987038 tctccatg-agcctcagggtccccatcagcaaagaggga--ggagtgCCC-ATTGTCAGCCACC
i cerAty1.NW_012002657v1    C 0 C 0
s otoGar3.GL873533             427723 57 -  31380117 CTCCCTTG-AGACTCTGTGTCCACATT--TACAGAGGGA---GAATGCCC-ATCCACAATTGTC
i otoGar3.GL873533          C 0 I 5
s canFam3.chr9               55247095 26 +  61074082 -----------------------------------GGGC--AGTGTGCCC-GCTGGCAACCACT
i canFam3.chr9              C 0 I 15
s dasNov3.JH564958             179474 62 +    584178 tttctctg-agtttcattgtctccatctgcaaaaaggggatggagtaccc-actgtcaaccatc
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       643897 102 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=396311.000000
s hg38.chr15_KI270850v1_alt    222936 130 +    430880 CACAGTGCT--------CTCTA---------TCTGAAAGTG---------------------------------------------------------ACTTGGAAGATTGTCT--ACCATC-CGGGTGTGAGGAGTCATTAGCAGTGAGGCCA--AGTTT-------GGGAAGCCTGAGAGGAGGAGCTGTGCACCAAAGGGAG-GA---ttttttttt
s panTro5.chr15              18032764 132 -  83230942 CACAGTGCT--------CTCTA---------TCTGAAAGTG---------------------------------------------------------ACTTGGAAGATTGGCTCAGCCATCTCGGGTGTG-GGAGTC-TTAGCAGTGAGGCC---AGTTT-------GGGAAGCCTGAGAGAAGGA-CTGTGCACCGAAGGGAG-GAGttttttttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76630290 127 +  99763055 CACAGTGCT--------CTCTA---------TGTGAAAGTG---------------------------------------------------------GCTTGGAA-ACTGGCT--ACCAT--CGGGTGTGAGGAATCATTAGCAGTGAGGCCATGGCCAT-------GGGAAGCCTGAGAGGAG---CTGTGCATCAAGAGGAG-GG---TTTTTTTTT
i panPan2.chr15             C 0 I 24
s gorGor5.CYUI01015946v1       321504 130 +    378907 CACAGTGCT--------CTCTA---------TCTGAAAGTG---------------------------------------------------------ACTTGGAAGATTGGCT--GCCATC-CGAGTGTGAGGAGTCATTAGCAGTGAGGCCA--AGTTT-------GGGAAGCCTGAGAGGAGGAGCTGTCCACCAAAGGGAG-GA---TTTTTTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175442 130 + 121039945 CACAGTGCT--------CTCTA---------GCTGAAAGTG---------------------------------------------------------ACTTGGAAGACTGGCT--ACCATC-CGGGTGTGAGGAATCATTATCAGTGAGGCCA--AGTTT-------GGGAAGCCTGAGAGGAGGAGCTGTGCACCAAAGGGTG-GA---TTTTTTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60394572 125 + 169600520 CACAGTGCT--------CTCTA---------TCTGAAAGTG---------------------------------------------------------GCTTAGAA-ATTGGCT--ACTATC--AGGTGCAAGGAATCATTAGCAGTGAGGCCA--AGTTT-------GGGAAGCCTGA---GAGGAGCTGTGCATCAAGAGGAG-GG---TTTTATTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65342931 129 + 171882078 CACAGTGCT--------CTCCA---------T-TGAAAGTG---------------------------------------------------------GCTTGGAAGATTGGCT--ACCACC-TGGGTGCGAGGAATCCTTAGCAGTGAGGCCA--AGTTT-------GGGAAGCCTGAGAGGAGGAGCTCTGCACCAATGGGAG-GA---ttttttttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5382374 126 -   6271500 CACAGTGCT--------CTCCA---------T-TGAAAGTG---------------------------------------------------------GCTTGGAAGATTAGCT--ACCATC-TGGGTGCGAGGAATCCTTAGCAGTGAGG-CA--AGTTT-------GGGAAGCCTGAGAGGAGGAGCTCTGCACCAATGG--A-GA---TTTTTTTTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1844327 125 -   1987038 CACAGTGCT--------CTCTA---------TCTGAAAGTG---------------------------------------------------------GCTTGGAA-ATTGGCT--ACCATC--AAGTGCAAGGAATCATTAGCAGTGAGGCCA--AGTTT-------GGGAAGCCTGA---GAGGAGCTGTGCATCAAGAGGAG-GG---TTTTATTTT
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       643999 125 -   3745603 CACAGTGCT--------CTCTA---------TCTGAAAGTG----------------------------------------------------------CTTGGAAGA-TGGCT--ACCTTT--GGGTGCGAGGAATCATTAGCAGTGAGGCCA--GGTTT-------GGGGAGCTTCA---GAGGAGCTGTGCACCAAGAAGAGTGG---TTTTTGTTT
i aotNan1.NW_018511953v1    I 102 C 0
s otoGar3.GL873533             427785 124 -  31380117 CACAATAATG-TAAAAACACTA---------TTTGAAAGTG---------------------------------------------------------GCTTGAAAGAGTGACC--ATCATA-GGAATGTGAGGAATACTTATCCAAGAAGCCA--AGATT---------------TGGGGTGAAGAGCTTTAGACCATAAAGAG-GG---TTTT-----
i otoGar3.GL873533          I 5 C 0
s canFam3.chr9               55247136 141 +  61074082 CATAAAAATATTAAAAACTCTT---------TTCAAAAGTG---------------------------------------------------------TCTTGAAAGAGTGCAT--ATCCCC-TGAGGGTGAGGGATTGTGAGCCAGGAAGCCA--AGGTTTGGGGCGAGGAGGCCCAG--TTAGGAGCTGTGGATCAAGAAGAG-GG---CTTTTTT--
i canFam3.chr9              I 15 C 0
s dasNov3.JH564958             179536 198 +    584178 cagaattgt--------cttgagtatagaaCTATAAAAGAACTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTGGAATATTGAAC--ATCATA-TGGGTGTGAGGAATTATTAGCAAGGAAAGCA--GGACTTGGGGT-GAGGAGCATGA-ATTAGGAGCTGTGGACCAAGAAGAG-AG---TTTTTA---
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337329  50 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=6089.000000
s hg38.chr15_KI270850v1_alt    223066 4 +    430880 tttt
s panTro5.chr15              18032896 4 -  83230942 tttt
i panTro5.chr15             C 0 C 0
s rheMac8.chr7               60394697 4 + 169600520 TTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65343060 4 + 171882078 tttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5382500 4 -   6271500 TTTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1844452 4 -   1987038 TTCT
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       644124 4 -   3745603 TGTT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             427909 4 -  31380117 TTGT
i otoGar3.GL873533          C 0 I 531
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             179734 0 +    584178 C
e canFam3.chr9               55247277 0 +  61074082 C
e panPan2.chr15              76630417 24 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e nomLeu3.chr6              102175572 0 + 121039945 C
e saiBol1.JH378108            5013846 3869 -  54856640 M
e gorGor5.CYUI01015946v1       321634 0 +    378907 C

a score=4095.000000
s hg38.chr15_KI270850v1_alt    223070 1 +    430880 t
s panTro5.chr15              18032900 1 -  83230942 t
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321634 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175572 1 + 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60394701 1 + 169600520 T
i rheMac8.chr7              C 0 I 20
s macFas5.chr7               65343064 1 + 171882078 t
i macFas5.chr7              C 0 I 3
s macNem1.NW_012011056v1      5382504 1 -   6271500 T
i macNem1.NW_012011056v1    C 0 I 140
s cerAty1.NW_012002657v1      1844456 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 I 20
s aotNan1.NW_018511953v1       644128 1 -   3745603 T
i aotNan1.NW_018511953v1    C 0 I 6
s otoGar3.GL873533             428444 1 -  31380117 T
i otoGar3.GL873533          I 531 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             179734 0 +    584178 C
e canFam3.chr9               55247277 0 +  61074082 C
e panPan2.chr15              76630417 24 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=9886.000000
s hg38.chr15_KI270850v1_alt    223071 6 +    430880 tttGAG
s panTro5.chr15              18032901 6 -  83230942 ttGGTG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321635 6 +    378907 TTTGAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175573 6 + 121039945 TAAGGG
i nomLeu3.chr6              C 0 I 4
s rheMac8.chr7               60394722 6 + 169600520 TTGGGG
i rheMac8.chr7              I 20 C 0
s macFas5.chr7               65343068 6 + 171882078 tttGAG
i macFas5.chr7              I 3 C 0
s cerAty1.NW_012002657v1      1844477 6 -   1987038 TTGGGG
i cerAty1.NW_012002657v1    I 20 C 0
s aotNan1.NW_018511953v1       644135 6 -   3745603 ATTGAG
i aotNan1.NW_018511953v1    I 6 C 0
s otoGar3.GL873533             428445 6 -  31380117 TTTGAG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247277 4 +  61074082 --GAAG
i canFam3.chr9              C 0 I 6
s dasNov3.JH564958             179734 3 +    584178 ---GAG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76630417 24 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e macNem1.NW_012011056v1      5382505 140 -   6271500 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=152951.000000
s hg38.chr15_KI270850v1_alt    223077 45 +    430880 -------AA--TCCAGA-GGCC--CTTATTCTCTGCTT-GCTTTCT-----------CAGCTGAACCCC
s panTro5.chr15              18032907 51 -  83230942 -------TACCTCTAGATGGCCGGCTTATTGTCTGCTTCCCTTTCT-----------CAGCTAAACCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76630441 45 +  99763055 -------AA--TCCAGA-GGCT--CTTATTGCCTGCTT-CATTTCT-----------CAGCTGAGCCCC
i panPan2.chr15             I 24 C 0
s gorGor5.CYUI01015946v1       321641 45 +    378907 -------AA--TCCAGA-GGTC--CTTATTGTCTGCTT-CCTTTCT-----------CAGCTGAACCCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175583 41 + 121039945 -------AA--TCCAGA-GGCC--CTTATTTTCTGCTT-CCTTTCT-----------CGGCTGAA----
i nomLeu3.chr6              I 4 C 0
s rheMac8.chr7               60394728 45 + 169600520 -------AA--TCCAGA-GGCC--CTTATTGTCTGTTT-CCTTTCT-----------CAGCTGAGCCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65343074 45 + 171882078 -------AA--TCCAGA-GAAC--CTTATTGTCTGCTT-CCTTTCT-----------CAGCTGAACCCC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1844483 45 -   1987038 -------AA--TCCAGA-GGCC--CTTATTGTCTGTTT-CCTTTCT-----------CAGCTGAGCCCC
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       644141 45 -   3745603 -------AA--TCCAGA-GGCC--CTTATTGTCTGCTT-CCTTTCT-----------CAGCTGAACCCC
i aotNan1.NW_018511953v1    C 0 I 112
s otoGar3.GL873533             428451 45 -  31380117 -------AA--TCCAGA-GGCC--CTTAACCATGCTCT-TCTTCCT-----------CAGCTGAAGCCC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247287 56 +  61074082 -------AG--GTGAGA-GGCC--CCTAGCGTGTGTCC-CCCTCCCCCTGCTCCCCACAGTGGTGCCCC
i canFam3.chr9              I 6 C 0
s dasNov3.JH564958             179737 52 +    584178 AACACAGAA--GTGAGA-AGCC--TTTATTATGTGCTT-CCTTTCT-----------CAGCTGTACCCC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e macNem1.NW_012011056v1      5382505 140 -   6271500 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=197821.000000
s hg38.chr15_KI270850v1_alt    223122 73 +    430880 TGGCCCCACAGCCCCCAGCAGGGCCATCTAAGGTGG---AGCA------GCT-ACAAGATGAGAC-CAACCACCTAAGGAAGGA
s panTro5.chr15              18032958 73 -  83230942 TGGCCTCAGAG-CCCCAGCAGGGCATCCTAAGGTGG---AGCA------GCTAACAAGATGAGACGCAAACCACTAAGG-CGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76630486 73 +  99763055 AGTCCCCGGCACCCCCAGCAGGGACCTCTGAGTTGG---AGCA------GCT-ACAAGATGAGGC-CAAACAGCTGAGGAAGGA
i panPan2.chr15             C 0 I 343
s gorGor5.CYUI01015946v1       321686 73 +    378907 TGGCCCCAGAGCCCCCAGCAGGGCCATCTAAGGTGG---AGCA------GCT-ACAAGATGAGAC-CAACCACCTAAGGAAGGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175624 61 + 121039945 ------------CCCCAGCAGGGCCCTCTGAGGTGG---AGCA------GCT-ACAAGATGAGAC-CAACCACCTAAGGAAGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60394773 73 + 169600520 TGTCCCCAGCACCCCCAGCAGGGACTTCTGAGGTGA---AGCA------GCT-ACAAGATGAGGC-CAGGCACCTGAGGAAGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65343119 73 + 171882078 GGGCCCCAGATCCCCCAGCAGGGCCCTCTGAGGTGG---AGCA------GCT-ACAAGATGAGAA-CAAACACCTAAGGAAGGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1844528 73 -   1987038 TGTCCCCAGCACCCCCAGCAGGGACTTCTGAGGTGA---AGCA------GCT-ACAAGATGAGGC-CAGGCACCTGAGGAAGGA
i cerAty1.NW_012002657v1    C 0 C 0
s otoGar3.GL873533             428496 76 -  31380117 CATCCCCAGCGCCCCCTGCAGGGCCCTCGGAGGTGGAACAGCG------GCT-GCAAGCAGAAGC-GGAGCAGCTGCAAAAGCA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247343 79 +  61074082 CAGCCCAGGAGCCCCCAGCCAGGCCCTTGGAGGAGG---AGCAGCAGCGGCT-GCACGCCGAGAC-TGAACAACTACAGAAGGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179789 76 +    584178 CACCCCAGGAGCCCCCGGCTGGGTACTCTGAGGTGGAACAGCA------GCT-GCAAGCAGAGGC-TGAAAAGCTGCAGAAGGA
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       644186 112 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e macNem1.NW_012011056v1      5382505 140 -   6271500 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=22107.000000
s hg38.chr15_KI270850v1_alt    223195 11 +    430880 GCTAGAGAGTG
s panTro5.chr15              18033031 10 -  83230942 GC-AGAGAGTG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321759 11 +    378907 GCTGGAGAGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175685 11 + 121039945 GCTGGAGAGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60394846 11 + 169600520 GGTGGAACGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65343192 11 + 171882078 GCTGGAGAGTC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1844601 11 -   1987038 GGTGGAAAGTT
i cerAty1.NW_012002657v1    C 0 C 0
s otoGar3.GL873533             428572 11 -  31380117 GCTGGAAAGCC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247422 11 +  61074082 GCTGGAGAGCC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179865 11 +    584178 GCTAGAGAACC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       644186 112 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76630559 343 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e macNem1.NW_012011056v1      5382505 140 -   6271500 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=139827.000000
s hg38.chr15_KI270850v1_alt    223206 54 +    430880 TGGGAAGACA-GCTCCAGGCTGAGGTGGAAAACAATCA-GATGTTGAGTCT-CCTGA
s panTro5.chr15              18033041 53 -  83230942 TGGGAAGACA-GCTCCA-GCTGAGGTGGAAAAC-ATCA-GATGTTGAGTCTCCCTGA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321770 54 +    378907 TGGGAAGACA-GCTCCAGGCTGAGGTGGAAAACAATCA-GATGTTGAGTCT-CCTGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175696 54 + 121039945 TGGGAAGACA-GCTCGAGGCCGAGGTAGAAAACAATCA-GATGCTGATTCT-CCTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60394857 54 + 169600520 TGGAGGGAAA-GCTGCAATCCCAGGTGGAAAACAATCA-GGCCTTGAGTCT-CCTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65343203 54 + 171882078 TGGGAAGACA-GCTCCAGGCCGAGGTGGAAAACAATCA-GATGTTGAGTCT-CCTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5382645 54 -   6271500 TGGGAAGACAGGCTCCAGGCCGA-GTGGAAAACAATCAGGATGTTGAGTCT-CCTG-
i macNem1.NW_012011056v1    I 140 C 0
s cerAty1.NW_012002657v1      1844612 54 -   1987038 TGGAGGGAAA-GCTGCAATCCCAGGTGGAAAACAATCA-GGCCTTGAGTCT-CCTGA
i cerAty1.NW_012002657v1    C 0 I 135
s otoGar3.GL873533             428583 54 -  31380117 TGGCAGGACA-GCTGCGTGACCAGGTGCAAGACAATGA-GGGTTTGATTCG-CCTGA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247433 54 +  61074082 TGGCCGAGCA-GGTGCAGGCCCAAGTGAAAGACAACGA-AGGTTTGAGTCG-CCTGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179876 54 +    584178 TAGCAGAGCG-ACTGCAGGCTCAGGTACATGACAACGA-GGGCCTGAGTCG-CCTGA
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       644186 112 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76630559 343 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=16932.000000
s hg38.chr15_KI270850v1_alt    223260 12 +    430880 ACAGGAGACA---GG
s panTro5.chr15              18033094 10 -  83230942 ACAGGAA--A---GG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321824 12 +    378907 ACAGGAGACA---GG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175750 12 + 121039945 ACAAGAGGCA---GG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60394911 12 + 169600520 GCAAGGAACA---AA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65343257 12 + 171882078 ACAGGAGACA---GG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5382699 15 -   6271500 ACAGGAGAGGCACGG
i macNem1.NW_012011056v1    C 0 C 0
s otoGar3.GL873533             428637 12 -  31380117 ACCTGGAGCA---GG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247487 12 +  61074082 ACCGGGAGCA---GG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179930 12 +    584178 ATCAGGAGCA---GG
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       644186 112 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76630559 343 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1844666 135 -   1987038 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=30656.000000
s hg38.chr15_KI270850v1_alt    223272 23 +    430880 AGGAGA-GGCTACGTGAACAGGAG
s panTro5.chr15              18033104  9 -  83230942 CGGAGA-GGC--------------
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321836  8 +    378907 AGGAGA-CG---------------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175762 23 + 121039945 AGGAGA-GTCTGTATGAACAGGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60394923 23 + 169600520 AGGAGA-GCTTTCGGGATCAGGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65343269 23 + 171882078 AGGAGA-GGCTACGTGAGCAGGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5382714 24 -   6271500 AGGAGAGGGCTACGTGAGCAGGAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1844801 23 -   1987038 AGGAGA-GGCTGCGGGAGCAGGGT
i cerAty1.NW_012002657v1    I 135 C 0
s otoGar3.GL873533             428649 23 -  31380117 GGCAGC-GGCTACGGGAGCTGGAG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247499 23 +  61074082 AGCAGC-GGCTGCTGGAGCTGGAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179942 23 +    584178 AGCAGC-GGCTGCTGGAGCTCGAG
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       644186 112 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76630559 343 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=450.000000
s hg38.chr15_KI270850v1_alt    223295 1 +    430880 G
s nomLeu3.chr6              102175785 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60394946 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65343292 1 + 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5382738 1 -   6271500 G
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1844824 1 -   1987038 G
i cerAty1.NW_012002657v1    C 0 C 0
s otoGar3.GL873533             428672 1 -  31380117 C
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958             179965 1 +    584178 A
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       644186 112 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55247522 0 +  61074082 C
e panPan2.chr15              76630559 343 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M
e gorGor5.CYUI01015946v1       321844 0 +    378907 C
e panTro5.chr15              18033113 0 -  83230942 C

a score=20292.000000
s hg38.chr15_KI270850v1_alt    223296 22 +    430880 AGAGGCTACGTGAACAGGAGGA
s panTro5.chr15              18033113 15 -  83230942 -----CTAC-TAAACAGGA-GA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321844 17 +    378907 -----CTAAGTGAACAGGAGGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175786 22 + 121039945 AGAGGATACGTGAACAGGAGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60394947 22 + 169600520 AGAGGCTCTGAGAGCAGGAGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65343293 22 + 171882078 AGAAGATACATGAGCAGGAGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5382739 22 -   6271500 AGAGGCTATCTGGGCAGGAGGA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1844825 22 -   1987038 AGAGGCTGCGAAAGCAGGAGGA
i cerAty1.NW_012002657v1    C 0 C 0
s otoGar3.GL873533             428673 10 -  31380117 AGG--------AAGCAGA----
i otoGar3.GL873533          C 0 C 0
e aotNan1.NW_018511953v1       644186 112 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             179966  0 +    584178 C
e canFam3.chr9               55247522  0 +  61074082 C
e panPan2.chr15              76630559 343 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=1421.000000
s hg38.chr15_KI270850v1_alt    223318 4 +    430880 GAGG-
s panTro5.chr15              18033128 3 -  83230942 GA-G-
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321861 4 +    378907 GAGG-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175808 4 + 121039945 CATG-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60394969 4 + 169600520 GAGG-
i rheMac8.chr7              C 0 I 305
s macFas5.chr7               65343315 4 + 171882078 GAGG-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5382761 4 -   6271500 GAGG-
i macNem1.NW_012011056v1    C 0 I 668
s cerAty1.NW_012002657v1      1844847 4 -   1987038 GAGG-
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       644298 4 -   3745603 GAGG-
i aotNan1.NW_018511953v1    I 112 C 0
s otoGar3.GL873533             428683 4 -  31380117 -AATC
i otoGar3.GL873533          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             179966 0 +    584178 C
e canFam3.chr9               55247522 0 +  61074082 C
e panPan2.chr15              76630559 343 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=9610.000000
s hg38.chr15_KI270850v1_alt    223322 10 +    430880 CTGTGTGAAC
s panTro5.chr15              18033131 10 -  83230942 CTGTGTGAAC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321865 10 +    378907 CTACGTGAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175812 10 + 121039945 CTCTGTGAAC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65343319 10 + 171882078 CTATCTGGGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1844851 10 -   1987038 CTGTGAAAGC
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       644302 10 -   3745603 CTCTGGGAGC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             428687 10 -  31380117 TGGGGTGACC
i otoGar3.GL873533          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             179966  0 +    584178 C
e canFam3.chr9               55247522  0 +  61074082 C
e panPan2.chr15              76630559 343 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e macNem1.NW_012011056v1      5382765 668 -   6271500 I
e rheMac8.chr7               60394973 305 + 169600520 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=20580.000000
s hg38.chr15_KI270850v1_alt    223332 8 +    430880 AGGAGGAG
s panTro5.chr15              18033141 8 -  83230942 AGGAGGAG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321875 8 +    378907 AGCAGGAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175822 8 + 121039945 AAGAGGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60395278 8 + 169600520 AGGAGGAG
i rheMac8.chr7              I 305 C 0
s macFas5.chr7               65343329 8 + 171882078 AGGAGGAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1844861 8 -   1987038 AGGAGGAG
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       644312 8 -   3745603 AGGAGGTG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             428697 8 -  31380117 AGGCGGAA
i otoGar3.GL873533          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             179966 0 +    584178 C
e canFam3.chr9               55247522 0 +  61074082 C
e panPan2.chr15              76630559 343 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e macNem1.NW_012011056v1      5382765 668 -   6271500 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=27480.000000
s hg38.chr15_KI270850v1_alt    223340 40 +    430880 AGGCTGTGTGAACAGGAGGAGAGGCTACGTGAACAGGAGG
s panTro5.chr15              18033149 20 -  83230942 AGGCTGTGTGAAT--------------------CAGGAGG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321883 19 +    378907 AGGCTACGTGAA---------------------CAGGAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175830 19 + 121039945 AGGCTATTTGAA---------------------AAGGAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60395286 40 + 169600520 AGGCTGTGAAAGCAGGAGGAGAGGCTGTGGGATCAGGAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65343337 40 + 171882078 AGGATACGTGAGCAGGAGGAGAGGATACGTGAGCAGGAGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1844869 39 -   1987038 AGGCTGTGGGATC-GGGGGAGAGGCTGTGGGATCAGGAGG
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       644320 40 -   3745603 AGGCTGAGAGAACAGGAGGAGAGGCTTCTTGAGCAGGAGG
i aotNan1.NW_018511953v1    C 0 I 17
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             179966  0 +    584178 C
e canFam3.chr9               55247522  0 +  61074082 C
e otoGar3.GL873533             428705  0 -  31380117 C
e panPan2.chr15              76630559 343 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e macNem1.NW_012011056v1      5382765 668 -   6271500 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=5922.000000
s hg38.chr15_KI270850v1_alt    223380 3 +    430880 AGA
s panTro5.chr15              18033169 3 -  83230942 AGA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321902 3 +    378907 AGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175849 3 + 121039945 AGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60395326 3 + 169600520 AGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65343377 3 + 171882078 AGA
i macFas5.chr7              C 0 I 231
s cerAty1.NW_012002657v1      1844908 3 -   1987038 AGA
i cerAty1.NW_012002657v1    C 0 C 0
e aotNan1.NW_018511953v1       644360 17 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             179966 0 +    584178 C
e canFam3.chr9               55247522 0 +  61074082 C
e otoGar3.GL873533             428705 0 -  31380117 C
e panPan2.chr15              76630559 343 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e macNem1.NW_012011056v1      5382765 668 -   6271500 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=6927.000000
s hg38.chr15_KI270850v1_alt    223383 4 +    430880 GGCT
s panTro5.chr15              18033172 4 -  83230942 GGCT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321905 4 +    378907 GGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175852 4 + 121039945 GGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60395329 4 + 169600520 GGCT
i rheMac8.chr7              C 0 I 29
s macFas5.chr7               65343611 4 + 171882078 GTCT
i macFas5.chr7              I 231 C 0
s cerAty1.NW_012002657v1      1844911 4 -   1987038 GGCT
i cerAty1.NW_012002657v1    C 0 C 0
e aotNan1.NW_018511953v1       644360 17 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             179966 0 +    584178 C
e canFam3.chr9               55247522 0 +  61074082 C
e otoGar3.GL873533             428705 0 -  31380117 C
e panPan2.chr15              76630559 343 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e macNem1.NW_012011056v1      5382765 668 -   6271500 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=-616.000000
s hg38.chr15_KI270850v1_alt    223387 3 +    430880 G-TG
s panTro5.chr15              18033176 4 -  83230942 GATG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321909 3 +    378907 G-TG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175856 3 + 121039945 G-TG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65343615 3 + 171882078 -ATG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1844915 3 -   1987038 -GTG
i cerAty1.NW_012002657v1    C 0 I 68
e aotNan1.NW_018511953v1       644360 17 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             179966 0 +    584178 C
e canFam3.chr9               55247522 0 +  61074082 C
e otoGar3.GL873533             428705 0 -  31380117 C
e panPan2.chr15              76630559 343 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e macNem1.NW_012011056v1      5382765 668 -   6271500 I
e rheMac8.chr7               60395333 29 + 169600520 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=3124.000000
s hg38.chr15_KI270850v1_alt    223390 7 +    430880 TGAA-CAG
s panTro5.chr15              18033180 8 -  83230942 TGAAGCGG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321912 7 +    378907 TGAA-CAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175859 7 + 121039945 TGAA-CAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65343618 7 + 171882078 GGAG-CAG
i macFas5.chr7              C 0 C 0
e aotNan1.NW_018511953v1       644360 17 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             179966 0 +    584178 C
e canFam3.chr9               55247522 0 +  61074082 C
e otoGar3.GL873533             428705 0 -  31380117 C
e panPan2.chr15              76630559 343 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1844918 68 -   1987038 I
e macNem1.NW_012011056v1      5382765 668 -   6271500 I
e rheMac8.chr7               60395333 29 + 169600520 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=6182.000000
s hg38.chr15_KI270850v1_alt    223397 11 +    430880 GAGAAGCT-GCC
s panTro5.chr15              18033188 12 -  83230942 GAGAAGCTGGCC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321919 11 +    378907 GAGAAGCT-GCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175866 11 + 121039945 AAAAAGCC-GCC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65343625 11 + 171882078 GAGTGGCT-GCC
i macFas5.chr7              C 0 C 0
s dasNov3.JH564958             179966  9 +    584178 GAGCAGCT-G--
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       644360 17 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55247522  0 +  61074082 C
e otoGar3.GL873533             428705  0 -  31380117 C
e panPan2.chr15              76630559 343 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1844918 68 -   1987038 I
e macNem1.NW_012011056v1      5382765 668 -   6271500 I
e rheMac8.chr7               60395333 29 + 169600520 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=20667.000000
s hg38.chr15_KI270850v1_alt    223408 45 +    430880 AGGGCA-GGAGAGGCTGCTGGAA--GAGGTGGAGAAGCTGTTAAAACA
s panTro5.chr15              18033200 47 -  83230942 AGGGCAGGGAGAGGC-GCTGGAACCGAGGTGGAGAAGCTGTTAGAACA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321930 45 +    378907 AGGGCA-GGAGAGGCTGCTGGAA--GAGGTGGCGAAGCTGTTAGAAca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175877 45 + 121039945 AGGGCA-GGAGAGGCTGCTGGAA--GAGGTGGAGAAGCTGTTAGAACA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65343636 45 + 171882078 AGAGCA-GGAGAGGCTGCTGGAG--GAGGTGAAAAAGCTGTTGGAACA
i macFas5.chr7              C 0 I 296
s canFam3.chr9               55247522 18 +  61074082 CGGGCA-GCCGAG--TGCTGG---------------------------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179975 15 +    584178 AGCGCT-GGGGAGA--GC------------------------------
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       644360 17 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e otoGar3.GL873533             428705  0 -  31380117 C
e panPan2.chr15              76630559 343 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1844918 68 -   1987038 I
e macNem1.NW_012011056v1      5382765 668 -   6271500 I
e rheMac8.chr7               60395333 29 + 169600520 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=39103.000000
s hg38.chr15_KI270850v1_alt    223453 104 +    430880 GGAGAGGCGGC---------------------AGGAGGAGCAGGAGAGGCTGCTGGAGA---GGGAGAGGCTGCTGGA-CGAGGTGGAGGAGCTCCTGGAGCAG-GAGAGGCTTCGGCAACAGGATGAGA
s panTro5.chr15              18033247 103 -  83230942 GGAAGGGCGGCA--------------------AGGAGGA-CA-GAGAGGCTGCTGGAGA---GGGAG-GGCTGCTGGACCGAGGTGGAGGAGCTCCTGGAGCAGAGAGAGGC-TCGCAAGAAGGATGAGA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       321975 125 +    378907 ggagaggcagcaggaggagcaggagaggcggcaggaggagcaggagaggctgctggaga---ggGAGAGGCTGCTGGA-CGAGGTGGAGGAGCTGCTGGAACAG-GAGAGGCTTCGGGAGCAGGATGAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102175922 107 + 121039945 GGAGAGGCGGC---------------------AGGAGGAGCAGGAGAGGCGGCAGGAGGAGCAGGAGAGGCTGGTTGT-CGAGGTGGAGGAGCTGCTAGAACAG-CAGAGGCTTCGGGAGCAGGATGAGA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65343977 104 + 171882078 GGAGAGGCGAT---------------------AGGAGGAGCAGAAGAGGCTGCTGGAGG---AGGAGCAGCTGCTGGA-CCAAGTGGAGGAGATGCTGGAACAG-GAGAGGCTGCGGGAGCAGGATCAGA
i macFas5.chr7              I 296 C 0
s canFam3.chr9               55247540  62 +  61074082 -GGGGAGCAGG---------------------CAGAGGAACGCAAGCAGATTCTGGAGA---GCATG------------CAGAGCGATCGCACCACCAT-------------------------------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179990  55 +    584178 ----AGGCGGC-------------------------CGAGCGGGAACAGATTCTGGAGA---GCATG------------CAGAGCGACCGCACCACCAT-------------------------------
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       644360  17 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e otoGar3.GL873533             428705   0 -  31380117 C
e panPan2.chr15              76630559 343 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337329  50 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1844918  68 -   1987038 I
e macNem1.NW_012011056v1      5382765 668 -   6271500 I
e rheMac8.chr7               60395333  29 + 169600520 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=24592.000000
s hg38.chr15_KI270850v1_alt    223557 44 +    430880 GGCTGTGGCAGCAGGAGACTCT--gcgggagctggagaggtt-gcgg
s panTro5.chr15              18033350 47 -  83230942 GGCTGTGGCAGCAGGAGACTCTGGGCAGGAGCTGGAGAGGCTGGCGG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       322100 44 +    378907 GGCTGTGGCAGCAGGAGACTCT--GCAGGAGCTGGAGAGGCT-GTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102176029 44 + 121039945 GGCTGTGGCAGCAGGACACTCT--GCGGGAGCTGGAGAGGAT-GCTG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65344081 26 + 171882078 GGCTGTGGGAGCAGGAGACA--------------------CT-GCGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5383433 44 -   6271500 GGCTGTGGGAGCAGGAGACACT--gcgggagctggagaggct-gcgg
i macNem1.NW_012011056v1    I 668 C 0
s canFam3.chr9               55247602 25 +  61074082 --------CAGCCGTGCGCTCT--CCCAGAACCGC------------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             180045 25 +    584178 --------CAGCCGCGCACTCT--CCCAGAACCGC------------
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       644360 17 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e otoGar3.GL873533             428705  0 -  31380117 C
e panPan2.chr15              76630559 343 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1844918 68 -   1987038 I
e rheMac8.chr7               60395333 29 + 169600520 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=4955.000000
s hg38.chr15_KI270850v1_alt    223601 43 +    430880 gagctggagaggatgctggagctggGGTGGGAAGCCCTGTACG
s panTro5.chr15              18033397 38 -  83230942 GAGCTGGAGGAG----CGGA-CTGGGGTGGGAAGCCTCTAGCG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       322144 42 +    378907 GAGCTGGAGAGGATGCTGGAGCT-GGGTGGGAAGCCCTCTATG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102176073  1 + 121039945 C------------------------------------------
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65344107 43 + 171882078 GAGCTGGAGAGGATGCTGGAGCTGGGGTGGGAAGCCCTCTACG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5383477 43 -   6271500 gagctggagaggatgctggagctggGGTGGGAAGCCCTCTACG
i macNem1.NW_012011056v1    C 0 C 0
s otoGar3.GL873533             428705 43 -  31380117 GAGCGCAAGAAGATTCTGGAGACCATGCAGAATGACCGTGCCA
i otoGar3.GL873533          C 0 I 39
s canFam3.chr9               55247627 10 +  61074082 GAGCTCAAGG---------------------------------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             180070 10 +    584178 GAGCTCAAGG---------------------------------
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       644360 17 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76630559 343 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1844918 68 -   1987038 I
e rheMac8.chr7               60395333 29 + 169600520 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=104844.000000
s hg38.chr15_KI270850v1_alt    223644 29 +    430880 AGCAGCGGGCCGAGCCACGCAGCGGCTTC
s panTro5.chr15              18033435 27 -  83230942 AGCAGC-GGCCGAGTCACGCAGCGG-TTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76630902 29 +  99763055 AGCAGCTGGCCGAGCCACAGTGTGGCTTC
i panPan2.chr15             I 343 C 0
s gorGor5.CYUI01015946v1       322186 29 +    378907 AGCAGTGGGCGGAGTCACACAGCGGCTTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102176074 29 + 121039945 AGCAGCGGGCCGAGCCACACAGCGGCTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60395362 29 + 169600520 AGCAGCTGGCCGAGCCACATTGCAACTTC
i rheMac8.chr7              I 29 C 0
s macFas5.chr7               65344150 29 + 171882078 AGCAGCAGGCGGAGCCACACAGCAGCTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5383520 29 -   6271500 AGCAGCAGGCGGAGCCACACAGCAGCTTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1844986 29 -   1987038 AGCAGCTGGCCGAGCCACATTGCAGCTTC
i cerAty1.NW_012002657v1    I 68 C 0
s otoGar3.GL873533             428787 29 -  31380117 ACCAGCTGGCGGAGTTGCAGGATGGCTTT
i otoGar3.GL873533          I 39 C 0
s canFam3.chr9               55247637 29 +  61074082 AGCAGCTGGTTGAGCTGCAGAACGGCTTC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             180080 29 +    584178 AGCAACTGGTCGAGTTGCAGAATGGCTTT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       644360 17 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=72022.000000
s hg38.chr15_KI270850v1_alt    223673 20 +    430880 GAGGAGCTGGTACGTTGCCC
s panTro5.chr15              18033462 18 -  83230942 GAGGAGCTGGTGCGTT--CC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76630931 20 +  99763055 GAGGATCTGGTGGGTTGCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       322215 20 +    378907 GAGGAGCTGGTGCGTTTCCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102176103 20 + 121039945 GAGGCGCTGGCGCGTTGCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60395391 20 + 169600520 GAGGATCTGGTGTGTTGCCc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65344179 20 + 171882078 GAGGAGCTGGTGGGTTCCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5383549 20 -   6271500 GAGGAGCTGGTGGGTTGCCC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1845015 20 -   1987038 GAGGATCTGGTGGGGTGCCC
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       644377 19 -   3745603 GAGGAGCTGGTGCATTG-CC
i aotNan1.NW_018511953v1    I 17 C 0
s otoGar3.GL873533             428816 20 -  31380117 ATCAAGCTGGTGTGTGTCCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247666 20 +  61074082 GTCAAGCTGGTGTGTAGCCC
i canFam3.chr9              C 0 I 45
s dasNov3.JH564958             180109 20 +    584178 ATCAGGCTGGTGCGCAGCGC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=85583.000000
s hg38.chr15_KI270850v1_alt    223693 28 +    430880 CACCTG-GGGAGGCTGCCCTCTTCcctag-------------------------------------
s panTro5.chr15              18033480 28 -  83230942 AACCTCTGGGAGGCTG-CCTCTCCCTAAT-------------------------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76630951 28 +  99763055 CACCTG-GGGAGCCTGCCCTCATCCCTGT-------------------------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       322235 28 +    378907 CACCTG-GGGAGGCTGCCCTCTTCcctag-------------------------------------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102176123 28 + 121039945 CACCTG-GGGAGGCTGCCCTCTTCCCTAG-------------------------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60395411 28 + 169600520 tacctg-tggagcctgccctcatccctaa-------------------------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65344199 28 + 171882078 CACCTG-GGGAGTCTGCCCTCTTCcctag-------------------------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5383569 28 -   6271500 CACCTG-GGGAGCCTGCCCTCTTCcctag-------------------------------------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1845035 28 -   1987038 TACCTG-TGGAGCCTGCCCTCATCcctaa-------------------------------------
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       644396 28 -   3745603 CACCTG-GGGAGCCTGCCCTCCTCCCcag-------------------------------------
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             428836 28 -  31380117 CGCCTA-ACTAGCCTGCCCTCCTCACTGG-------------------------------------
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958             180129 64 +    584178 -CCCTg-gctaacctgccctcattcctcacttgccatgtcctttggtgtagaataaggcacttgaa
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55247686 45 +  61074082 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=1131251.000000
s hg38.chr15_KI270850v1_alt    223721 278 +    430880 ccctcaaggcctttgtttccccacctgtaaaatggggCATTGTA---GCCTTCACATG---AAATGGTACTTCTAAAGGCA-TCTGTGAGCCAGA---------GCCCTGCTCTG--ATGGCTGTGGGAGAGAGGGGATA-TTTTTCTAACCTGCCTCCACCCTTCCCGGTGCCATGGGAGGCAGAC-ACTAAGTTCTGGGGTCTCCAGTTTTAGTGGGTGG-CCACTGATTGCT--TCTCTCTGTCCAGAACAACGAGAACAA-G---------AGCACACT-GCAGT-TGGAGCAGCAAGTAAAG---GAGCT---G------------------------
s panTro5.chr15              18033508 273 -  83230942 CCCTCAAGGCCTTTGTTTCCCCCACCGTAAAATGGGGCATTGTA---GCCTTCA-ATG---TAAATGTACTTCTAAAGGCA-TCTGTCGGCGCAA---------GCACTGC-CTG--ATTGCTG-GGGAGAGAGGGGATA----TTCTAACCTGCCTCCAACCTTCCCGGTGGCATGGGAGGCAGACGACTAAGTTCT--CGTCTCCAG-TTTAG-GGGTGGCCCACTGATTGCTTCTCTCTCTGTCCAG-ACAACGAGAACAAGG---------AGCACACTGGCAGTCTGGAGCAGCAAGTAAA----GAGCT---G------------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76630979 286 +  99763055 ccctccaggcctttgtttccccacctgtaaaatggggCAGTGCA---GCCCTCACATG---AAATGGTACTTCTAAAGGCA-CCTGTGAGCCAGAGCTCATCAGGCCCTCCTCTG--ATGGCTGTGGGGGAGAGGGGATGATTTTTCTAACCTGCCTCCA-CCTTTCCAGTGACATGTGAGGCAGAC-ACCAAGTTCAGGGGTCTCCAGCTGCAGTGGATGG-CCACTGATTGCT------TCTGTCCAGAACAACGAGAACAA-G---------AGCACACT-GCAGT-TGGAGAAGCAAGTAAAG---GAGCTGAAG------------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       322263 279 +    378907 ccctcaaggcctttgtttccccacctgtaaaatggggcattgTA---GCCTTCACATG---AAATGGTACTTCTAAAGGCA-CCTGTGAGCCAGA---------GCCCTGCTCTG--ATGGCTGTGGGAGAGAGGGGATGATTTTTCTAACCTGCCTCCACCCTTCCCGGTGCCATGGGAGGCAGAC-ACTAAGTTCTGGGGTCTCCAGTTTTAGTGGGTGG-CCACTGATTGTT--TCTCTCTGTCCAGAACAACGAGAACAA-G---------AGCGCACT-GCAGT-TGGAGGAACAAGTAAAG---GAGCT---G------------------------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102176151 267 + 121039945 CCCTCAAGGCCTTTGTTTCCCCACCTGTAAAATGGGGCATTGTA---GCCTTCACATG---AAATGGTACTTCTAAAGGTA-CCTGTGAGCCAGA---------GCCCTGCTCTG--ATGGCTGTGGGAGAGAGGGGATGATTTTTCTAACCTGCCTCCACCCTCCCCAGTGCCATGGGAGGCAGAC-GCCAAGTTCTGGGGTCTCCAGTTTTAGTGGGTGG-CCACTGATTGCT--TCTCTCTGTCCAG---------AACAA-G---------ACCCTACA-GCTGG-TGGAGCAGAAAGTAAAG---GA------G------------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60395439 291 + 169600520 ccctccaggcctttgtttccccacctgtaaaatggggcagtgta---gcccttacatg---acatggtacttctaaagGCA-CCTGTGAGCCAGAGCTCATCAGGCCCTGCTCTG--ATGGCTGTTGGGGAGAGGGGATGATTTTTCTAACCTGCCTCCACCCTTCCCGGTGACATGAGAGGCAGAC-ACCAAGTTCTGGGGTCTCCACCTGTAGTGGGTGG-CCAATGATTGCT--TCTCTCTGTCCAGAACAATGAGAACAA-G---------AGCGCACT-GCAGT-TGGAGCAGCAAGTAAAG---GAACTGCAG------------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65344227 279 + 171882078 ccctccaggcctttgtttccccacctgtaaaatggggCATTGTA---GCCCTCACATG---AAATGGTACTTCTAAAGGCA-CCTGTGAGCCAGA---------GCCCTGCTCTG--ATGGCTGTGGGAGAGAGGGGATGATTTTTCTTACCTGCCTCCACCCTTCCCGGTGCTATGGGAGGCAGAC-ACCAAGTTCTGGGGTCTCCAGCTATAGTGGGTGG-CCAATGATTGCT--TCTCTCTGTCCAGAACAATGAGAACAA-G---------AGCGCACT-GCAGT-TGGAGCCGCAAGTAAAG---GAGCT---G------------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5383597 279 -   6271500 ccctccaggcctttgtttccccacctgtaaaatggggaATTGTA---GCCCTCACATG---AAATGGTACTTCTAAAGGCA-CCTGTGAGCCAGA---------GCCCTGCTCTG--ATGGCTGTGGGAGAGAGGGAATGATTTTTCTAACCTGCCTCTACCCTTCCCGGTGCTATGGGAGGCAGAC-ACCAAATTCTGGGGTCTCCAGCTATAGTGGGTGG-CCAATGATTGCT--TCTCTCTGTCCAGAACAACGAGAACAA-G---------AGTGCACT-GCAGT-TGGAGCCGCAAGTAAAG---GAGCT---G------------------------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1845063 291 -   1987038 ccctccaggcctttgtttccccacctgtaaaatggggcagtgta---gcccttacatg---acatggtacttctaaagGCA-CCTGTGAGCCAGAGCTCATCAGGCCCTGCTCTG--ATGGCTGTTGGGGAGAGGGGCTGATTTTTCTAACCTGCCTCCACCCTTCCCGGTGACATGGGAGGCAGAC-ACCAAGTTCTGGGGTCTCCAGCTGTAGTGGGTGG-CCAATGATTGCT--TCTCTCTGTCCAGAACAATGAGAACAA-G---------AGCGCACT-GCAGT-TGGAGCAGCAAGTAAAG---GAACTGCAG------------------------
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       644424 270 -   3745603 ccctccaggcctttgttttcccgcctgtgaaatgggggagtAT------------ATG---AAATGGGGCTTCTAAAGGCA-CCTGTGAGCCACA---------GCCCTGCTCTG--ATGGCTGTGGGAGAAAGGAGACAATTTTTCTAACCTGCCTCCACCCTTCCCGGTGCCATGGGAGGCAGAC-ACCAGGTTCTGGGGTCTCCAGCTGCAGTGGGTGG-CCGCTGATTGCT--TCTCTCTGTCTAGGACAATGAGATCAG-G---------AGCGCACT-GCATT-TCGAGCAGGAAGGAAAG---GAGCT---G------------------------
i aotNan1.NW_018511953v1    C 0 I 19
s otoGar3.GL873533             428864 249 -  31380117 CCCTCTGGGACTTTGATTTCCCACCTGTAAAACTGGGTGGGCTA---GAGCTCATGTG---AAATGGTA---------------------CCAGA---------GTCCCACTCCAGTGTGTCTGTGGGGAG------------TTTCCAACCTGCCTCCACCCATCCCTGCACCTTGGGAGGTGAGC-ATCAAGTTCTGGAGTCTCCAG--------------CTGCTGATTACT-TTTTCTCTGTCCAGAGCAATGACAATAT-GGAAATTTCCAATGCACT-ACAGT-CTGAGCAGCATGTGAAGAAAGAACT---G------------------------
i otoGar3.GL873533          C 0 I 24
s canFam3.chr9               55247731 276 +  61074082 ccctctaggcctttgtctccccacgtgtaaatgggggaAGGGTGTATGCACCCA-ATGTGAAAATGGTGCCCTTGAAGGCACCCTGTGAGCCGGAGA-------GCCCTGCTGAG--ATGA--GTGGGGCAGAGGTGGTGAGGAC----ACCTGCCTCCACTCTTCCCTGCACTGTGGGAGGTAGAC-TCCATGTTCTG-----------------GGGTGG-CCACTGACTCCT--CTTCTCTCTCCAGTCCAACGAGAACAT-GGAGATTACTACCGCACT-GCAGT-CGGAGCAGCATGTCAAGAAGGAGCT---G------------------------
i canFam3.chr9              I 45 I 24
s dasNov3.JH564958             180193 299 +    584178 ccctctgggccttggttttcccacctataaagtggggTGTGCCG---ACCTCCAGGTG---CAGTGGTGCC-----------CATGTGAG----A---------TCCATGCTCAG--ATGTGAGTGGG-GTGAGGGGGCGTATTTTCCAACTTGTCTTCACCCTTAACTGAGCTGTG-GAGGGGGAC-ACCAAGTTCTGGGGTCTTTGGCTGCATTGGGTAG-TTGCTGATTACT--TCTCTCTGTTCAGAGCAATGAGAATAT-GGAGATGACCAGTGCCCT-GCAGT-CAGAACAGTATGTTAAGAAAGAGCT---GGCCAAGAAGCTGGAACAGCTGCAG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337329  50 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=71418.000000
s hg38.chr15_KI270850v1_alt    223999 19 +    430880 GAGAAGTCGGGTGAGCTGA
s panTro5.chr15              18033781 17 -  83230942 AAGAAGTC-GGTG-GCTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76631265 19 +  99763055 GAGAAGCCAGGCGAGGTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       322542 19 +    378907 AAGAAGCCGGGTGAGCTGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102176418 19 + 121039945 AAGAAGCCGGGTGAGCTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60395730 19 + 169600520 GAGAAGCTGGGTGAGGTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65344506 19 + 171882078 AAGAAGCTGGGCGAGCTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5383876 19 -   6271500 AAGAAGCTGGGCGAGCTGA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1845354 19 -   1987038 GAGAAGCTGGGCGAGGTGA
i cerAty1.NW_012002657v1    C 0 C 0
s otoGar3.GL873533             429137 19 -  31380117 GAAGAGCTGGGCGAGATGA
i otoGar3.GL873533          I 24 C 0
s canFam3.chr9               55248031 19 +  61074082 GAGAAGCTGGGAGAGCTAA
i canFam3.chr9              I 24 C 0
s dasNov3.JH564958             180492 19 +    584178 GAAAAGCTGGCAGAGCTCA
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       644694 19 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=756415.000000
s hg38.chr15_KI270850v1_alt    224018 218 +    430880 AAGAGA-CTGTAACCTCCGA--------------CCCAT-----CCAAGAAGATG-TGGGAGGCGGGC--ACCAGCCTCTGGG-----------------------------------------------GAGGGGAGGTGCCAGGCC--------A-CAG-----GCA-GCTGCAG-CCT----GG--GGACAGGTGACCCCAGCACCCTC-CGGGGCAGTCCTAT------GACTGTTTCTTGCTTCCTGCCCTC-TGACTTTTAGAGGTGGGTAGCCCTGGGGTCCTCCCAGGTCTGGACA-TCA-TCATCCCAGCT
s panTro5.chr15              18033798 234 -  83230942 AAGAGACCTGTAACCTCCGACCCGTGTTTTGCGTCCCAT-----CCAAGAAGATG-TGGGAGGC-GGC--ACCAGCCTCTGGG-----------------------------------------------GAGGGGAGGT--CAGGCC--------AGCAG-----GCAGGCTGCAGCCCT----GG--GGACAGGTGACCCCAGCACCCTCACGGGGCAGTCCTAT------GACTGTTTATTGCTTCCTGCCCTCTTGACTTTTAGAGGTGGGTAGCCCT-GGGTCCTCCCCGGTCTGGACACTCACTCATCC--ACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76631284 218 +  99763055 AGGATA-TGGTAACCTCCAC--------------CCCAT-----CCAAGAAGGGC-TGGGAGGCGGGC--ATCAGCCTCTGGG-----------------------------------------------GAAGGGAGGTGCCAGGCC--------A-AAG-----GCA-GCTCCAG-CTG----GG--GGGCAGGTGACCCCAGCACCCTC-CAGGGCAGCCCTAT------GACTGTTTCTTGCTTCCTGCCCTC-TGACTTTTAGAGGTGGGTAGCCCTGGGCTCCTCCCAGGTCTGGACA-TCA-TCATCCCAGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       322561 217 +    378907 AAGAGA-CTGTAATCTCCGA--------------CCCAT-----CCAAGAAGACG-TGGGAGGCAGAC--ACCAGCCTCTGGG-----------------------------------------------GAGGGGAGGTGCCAGGCC--------A-GAG-----GCA-GCTGCAG-CCT----GA--GGGCAGGTGACCCCAGCACCCTC-CAGGGCAGTCCTAT------GACTGTTTC-TGCTTCCGGCCCTC-TGACTTTTAGAGGTGGGTAGCCCTGGGGTCCTCCCAGGTCTGGACA-TCA-TCATCCCAGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102176437 209 + 121039945 AAGAGA-TGGTAACCTCTGA--------------CCCAC-----CCAAGAAGGGC-TGGGAGGCGGGC--ACCATCCTCTGAG-----------------------------------------------GAGGGGAGATGCCAGGCC--------A-GAG-----GCA-GCTGCAG-CCT----GG--GGGCAGGTGACCCCAGCACCCTC-CAGGGCAGTCCTAT------GACTGTTTCTTGCTTCCTGCCCTC-TGACTTTTAG--------AGCCCT-AGCTCCTCCCAGGTCTGGACA-TCA-TCATCCCAGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60395749 218 + 169600520 AGGAGA-CGGTAACCTCTGC--------------CCCAT-----CCAAGAAGGGC-TGGGAGGTGGGC--ACCAGCCTCTGGG-----------------------------------------------GAGGGGAGGTGCCAGGCC--------A-AAG-----GCA-GCTCCAA-CTG----GG--GGGTAGGTGACCCCAGCACCCTC-CAGGGCAGCCCTAT------GACTGTTTCTTGCTTCCTGCCCTC-TGACTTTTAGAGGTAGGTAGCCCTGGGTTCCTCCCAGCTCTGGACA-TCA-TCATCCCAGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65344525 208 + 171882078 AAGACA-CGGTAACCTCTGA--------------CCCAT-----CCAAGAAGGGC-TGGGAGGCGGGC--ACCAGCCTCTGGG-----------------------------------------------GAAGGGAGGTGCCAGGCC--------A-GAG-----GCA-GCTGCAG-CCT----GC--GAGCAGGTGACC----------C-TGGGGCAGTCCTAT------TACTGTTTCTTGCATCTTTCCCTC-TGACTTTTAGAGGTGGGGAGCCCTGGGCTCCCCCCAGGTCTGGATA-TCG-TCATCCCAGCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5383895 198 -   6271500 AAGACA-CGGTAACCTCTGA--------------CCCAT-----CCAAGAAGGGC-TGAGAGGT---------------------------------------------------------------------GGGAGGTGCCAGGCC--------A-GAG-----GCA-GCTGCAG-CCT----GG--GAGCTGGTGACCCCAGCACTCTC-CAGGGCAGTCCTAT------GACTGTTTCCTGCTTCCTGCCCTC-TGAGTTTTAGAGGTGGGGAGCGCTGGGCTCCCCCCAGGTCTGGAAA-TCA-TCATCCCAGCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1845373 218 -   1987038 AGGAGA-CGGTAACCTCTGC--------------CCCAT-----CCAAGAAGGGC-TGGGAGGTGGGC--ACCAGCCTCTGGG-----------------------------------------------GAGGGGAGGTACCAGGCC--------A-AAG-----GCA-GCTCCAA-CTG----GG--GGGTAGGTGACCCCAGCACCCTC-CGGGGCAGCCCTAT------AACTGTTTCTTGCTTCCTGCCCTC-TGACTTTTAGAGGTAGGTAGCCCTGGGTTCCTCCCAGCTCTGGACA-TCA-TCATCCCAGCT
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       644713 215 -   3745603 AGGAGA-CGGTAACTTCTGC--------------CCCAT------CAAGGAGGGC-TGGGAGGCAGGC--ACCGGCCTCTTGG-----------------------------------------------GA-GGGAGGTGCAAGGCC--------A-CAG-----GCA-GCTCCAC-TCT----GG--GGGCAGGTGACCCCA-CACCCTC-CAGGGCAGTCCTGT------GACCGTTTCTTGCTTCCTGCCCTC-TGAGTTTTAGAGGTGGGTAGCCCTGGGCTCCTCCCAGGCCTGGACA-TCA-TCATCCCAGCT
i aotNan1.NW_018511953v1    I 19 C 0
s otoGar3.GL873533             429156 174 -  31380117 AGGAGA-CGGTAACCAGTGT--------------TCCAT-----CTGAGAA------------------------------AG-----------------------------------------------GAGGGGCGGTGCCAGGCC--------A-GGGCAGACGCA-GCTCTAGACTG----AG--GGATACATGACCTCAGAGACCTG-CAGAACAGGTCTGT------GACT----------TATCACTCCC-TG-------------GGTAGTCCTGGGTTTCTCCGAGGTCTGGAAA-TGA-TCATCCTAGCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55248050 223 +  61074082 AGGAGA-TGGTAACTTACCC--------------CCCACACCAGCTGAGGAAGCC-TGGAGGACAAACCTACCTGCTCGGAGG-----------------------------------------------GTGGGAGGTTGCCCAGGA--------T-GGT-----GCA-GCTCCAG-CCTGTGGGG--GGACACCTGACTCCAGAGTCCTT-CCAATCCTGCCTGTGGTGCAGGCCCCTTGTCACTCCCAGCTGTC-TGACTCTACAGAGTGGGTATCCCTGGG------------CTGAAGG-TCC-TCGTCCTGGCT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             180511 259 +    584178 AAGAGA-CGGTAACCCCTGT--------------CCCAC-----TGGCAAAGGGCTTAGGAGACAGGC--ACAATCCTCTGGGCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTGCAACAGGGATGAAATTGGATTCTAGGCCCAGGTCAGA-GAG-----CCA-GCTCTGG-CCT----GGGAGGACAGGTGACCCTAGAGTCCTG-C----CAAGCCTGT------GACTATTCCTTACTCCCTGCTCTC-TGACTCTTAGA-GTAGGTAGCCTTGGG------------CCATAGG-TCA-TTTTCCTGGCT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337329  50 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=145611.000000
s hg38.chr15_KI270850v1_alt    224236 40 +    430880 AGAGGCATGGAGCCCCCCAATCACAGAGGAAGAGAC--AGTG
s panTro5.chr15              18034032 39 -  83230942 AGAGGCATGGAGCCCCCCAATCGCAGCGGAAGAGAC--AGT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76631502 40 +  99763055 AGAGGCATGGATTCCCCCAGTCACAGGGGAAGAGAC--AGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       322778 40 +    378907 AGAGGCATGGAGCCCCCCAATCACAGAGGAAGAGAC--AGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102176646 40 + 121039945 AGAGGCATGGAGCCCCCCAATCACAGAGGAAGAGAC--AGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60395967 40 + 169600520 AGAGGCATGGATTCCCCCAATCACAGAGGAAGAGAC--AGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65344733 39 + 171882078 AGAGCCATGGAGCCCCC-AGTCACAGGGGAAGAGAC--AGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5384093 40 -   6271500 AGAGGCATGGAGCCCTCGAGTCACAGGGGAAGAGAC--AGTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1845591 40 -   1987038 AGAGGCATGGATTCCCCCAATCACAGAGGAAGAGAT--AGTG
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       644928 40 -   3745603 AGAGGCATGGAGCCCCCCAGTCATAGGGCAAGAGAC--AGTG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             429330 42 -  31380117 AGAGGTACTGAGCACCCCTATCACATCATGATCACCTGAGTG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55248273 37 +  61074082 AGAGAGCTCAGGCCCCTAACG---Aggtcaagagat--ggtg
i canFam3.chr9              C 0 I 297
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             180770  0 +    584178 C
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=17561.000000
s hg38.chr15_KI270850v1_alt    224276  7 +    430880 GTATAAG------
s panTro5.chr15              18034071  6 -  83230942 GTAT-AG------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76631542  7 +  99763055 GTACAAG------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       322818  7 +    378907 GTATAAG------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102176686  7 + 121039945 GTATAAG------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60396007  7 + 169600520 GTATGAG------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65344772  7 + 171882078 GTATAAG------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5384133  7 -   6271500 GTATAAG------
i macNem1.NW_012011056v1    C 0 I 294
s cerAty1.NW_012002657v1      1845631  7 -   1987038 GTATGAG------
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       644968  7 -   3745603 GTGTGAG------
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             429372 13 -  31380117 GTATGATTAAGTG
i otoGar3.GL873533          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             180770  0 +    584178 C
e canFam3.chr9               55248310 297 +  61074082 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=177306.000000
s hg38.chr15_KI270850v1_alt    224283  57 +    430880 AGGCTCCTTA---------------------------------------------------------Tgtcgggtgt-ggtggctcacgcct-gcaatcccagcactttgggaggc
s panTro5.chr15              18034077  58 -  83230942 AGGCTCCTTA---------------------------------------------------------TGTC-GGTGTAAgtggctcacgcctggcaatcccagcactttgggagtc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76631549  57 +  99763055 AGGCTCCTTA---------------------------------------------------------Tgcggggcac-attggctcgcacct-gtaatcccagcactttgggaggc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       322825  57 +    378907 AGGCTCCTTA---------------------------------------------------------TGTTgggtgt-ggtggctcacacct-gtaatcccagcactttgggaggc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102176693  57 + 121039945 AGGCTCCTTA---------------------------------------------------------Tgtcgggtgt-ggtggctcacacct-gtaatcccagcactttgggaggc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60396014  52 + 169600520 AGGCTCCTTA---------------------------------------------------------Tgccaggcaa-ggtggctcatgcgt-gtaatcccagaactttgg-----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65344779  57 + 171882078 AGGCTCCTTA---------------------------------------------------------Tgtcgggtgt-ggtggctgacgcct-gtagtcccaccactttgggaggc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5384434  57 -   6271500 aGGCTCCTTA---------------------------------------------------------Tgtcgggtgt-ggtggctcatgcct-gtaatcccagcactttgggaggc
i macNem1.NW_012011056v1    I 294 C 0
s cerAty1.NW_012002657v1      1845638  52 -   1987038 AGGCTCCTTA---------------------------------------------------------Tgccaggcaa-ggtggctcatgcgt-gtaatcccagaactttgg-----
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       644975  57 -   3745603 AGGCTCTTTA---------------------------------------------------------Cgctgggtgc-ggtggctcacacct-gtaatcccagcactttgggaggc
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             429385 114 -  31380117 AGGATCCTTGGATTTAGACTGGATTCTGGTCTCGGCTCCACTGGTTGTTTTCAAATACTTAACATCTggctggccac-agtggcttacccct-gtcatcccagcactttgggagac
i otoGar3.GL873533          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             180770   0 +    584178 C
e canFam3.chr9               55248310 297 +  61074082 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337329  50 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=198844.000000
s hg38.chr15_KI270850v1_alt    224340 78 +    430880 tgaggcag-gacaatcacttgaggtcaggagtttgagaccaacatggccaacatggtgaaagctcatctcta--ctaaaat
s panTro5.chr15              18034135 69 -  83230942 tgaagcagcgacaat--cctgaggtcagga-tttga---------ggcccacatggtgaaagctcatctctaccctaaaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76631606 78 +  99763055 tgaggcag-gagaagcacttgaggtcaagagtttgagaccagcctggccaacatggcaaaacctcatctcta--cgaaaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       322882 78 +    378907 tgaggcag-gacaatcacttgaggtcaggagtttgagatcagcgtggccaacatggcgaaacctcatctcta--ctaaaat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102176750 78 + 121039945 tgaggcag-aacaatcacttgaggtcaggagtttgagaccagcgtggccaacatggcaaaagctcatctcta--ctaaaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60396066 59 + 169600520 --------------------gaggtcaggagtttcagaccagcctggccaacagggcaaaacctcatctcta--ctaaaat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65344836 78 + 171882078 tgaggcag-gagaatcacttgaggtcaggagtttgagaccagcctggctgacatggcaaaacctcatctcta--ctaaaat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5384491 78 -   6271500 tgaggcaa-gagaaacacttgaggtcaggagtttgggaccagcctggccaacatggcaaaacctcatctcta--ctacaat
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1845690 59 -   1987038 --------------------gaggtcaggagtttgagaccagcctggccaacagggcaaaacctcatctcta--ctaaaat
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       645032 59 -   3745603 tgaggcag--------------------gagtttgagatcagcctggccaacatggtgaagcctcatctcta--ttaaaat
i aotNan1.NW_018511953v1    C 0 I 20
s otoGar3.GL873533             429499 78 -  31380117 tgagacag-gacgattgcttgaagctaggaatttaagaacagcatgggcaatgtagcaagatataatctcta--caaaaat
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958             180770 29 +    584178 -------------------TGAGGC------ATTGAGCCCAAT--------TATAGGGAAAG-------------------
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55248310 297 +  61074082 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=-17210.000000
s hg38.chr15_KI270850v1_alt    224418 20 +    430880 taaaaat-aataataataa-tt
s panTro5.chr15              18034204 19 -  83230942 taataat-aataataagaa--t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76631684 20 +  99763055 taa-aac-aacaataaaaaatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       322960 20 +    378907 ttttttt-aaaaaaaataa-tt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102176828 16 + 121039945 taa-----aaaaaaaataa-tt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60396125 20 + 169600520 tacaaca-acaacaaaaaa-tt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65344914 18 + 171882078 ttcaaaa---aaaaaataa-tt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5384569 21 -   6271500 ttcaaaaaacaaaaaataa-tt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1845749 20 -   1987038 tacaaca-acaacaaaaaa-tt
i cerAty1.NW_012002657v1    C 0 C 0
s otoGar3.GL873533             429577 10 -  31380117 -----------ttgaaaaa-tt
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958             180799 11 +    584178 -------AGATAGTGATA----
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       645091 20 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55248310 297 +  61074082 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=8255.000000
s hg38.chr15_KI270850v1_alt    224438 2 +    430880 ag
s panTro5.chr15              18034223 2 -  83230942 ag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76631704 2 +  99763055 ag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       322980 2 +    378907 ag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102176844 2 + 121039945 ag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60396145 2 + 169600520 ag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65344932 2 + 171882078 ac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5384590 2 -   6271500 ag
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1845769 2 -   1987038 ag
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       645111 2 -   3745603 ag
i aotNan1.NW_018511953v1    I 20 C 0
s otoGar3.GL873533             429587 2 -  31380117 ag
i otoGar3.GL873533          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             180810 0 +    584178 C
e canFam3.chr9               55248310 297 +  61074082 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e saiBol1.JH378108            5013846 3869 -  54856640 M

a score=217180.000000
s hg38.chr15_KI270850v1_alt    224440 50 +    430880 ccaggcctggtggtgcatgcctgtaatcccagctactcaggaggctgag-a
s panTro5.chr15              18034225 49 -  83230942 ccggggctggtggtgcatgcctgtaat--cagctactcgggaggctgagta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76631706 50 +  99763055 ccaggcatggtggcacatgcctgtaatcccagctactcaggaggctgag-g
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       322982 50 +    378907 ccgggcctggtggtgcatgcctgtaatcccagctactcggcaggctgag-a
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102176846 50 + 121039945 ccgggcctggtggtgcatgcctgtaatcccagctactctggaggctgag-a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60396147 50 + 169600520 ccaggcatgatggcacatgcctgtaatcccagctacttgggaggctgag-g
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65344934 50 + 171882078 ctaggcttggtggtgcatgcctatcatcccagctactcaggaggctgag-a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5384592 50 -   6271500 ccaggcctggtggtgcatgcctgtaatcccagttactcaggaggctgag-a
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1845771 50 -   1987038 ccaggcatgatggcacatgcctgtcatcccagctactgaggaggctgag-g
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5017715 49 -  54856640 ctaggcatggtggcacatgcctgtaatcccagctactcggtaggctga--g
i saiBol1.JH378108          M 3869 C 0
s aotNan1.NW_018511953v1       645113 50 -   3745603 ctgggtgtggtggtgcacaccagtaatcccagctactcagggggctgag-g
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             429589 50 -  31380117 ccagccgtggtggcccatgactgtagtcccagctactcaggaggctgag-g
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958             180810  8 +    584178 ------------------------------------------GGATGGG-A
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55248310 297 +  61074082 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I

a score=269227.000000
s hg38.chr15_KI270850v1_alt    224490 63 +    430880 cacgagaatcacttgag----cccgggag-atgaaggttgcagtgagctgagattgcacc-actgcact
s panTro5.chr15              18034274 68 -  83230942 cacgagagacacttgggggccgcggggagcgtgaaggttgcagtgagctgagattgcaccaactg-act
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76631756 63 +  99763055 catgagaatcgcttgag----cccgggag-gtggaggttgcagtgagctgagattgcacc-actgcact
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       323032 63 +    378907 cacgagaatcacttgag----cccgggag-gtgaaggttgcagtgagctgagattgcacc-actgcact
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102176896 62 + 121039945 cac-agaatcacttgag----cccgggag-gtgaaggttacagtgagctgagatcgcacc-actgcact
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60396197 63 + 169600520 catgagaatctcttgag----cccgggag-gtggaggttgcagtgagctggcattgcacc-actgcact
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65344984 63 + 171882078 cacgagaatcatttgag----cctgggag-gtagaggttgcagtgagctgagatcacacc-actggact
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5384642 63 -   6271500 catgagaatcatttgag----cccaggag-gtggaggttgcagtgagctgagatcacacc-actgcact
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1845821 63 -   1987038 catgagaatcttttgag----cccgggag-gtggaggttgcagtgagctggcattgcacc-actgcact
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5017764 63 -  54856640 cacaggaatcccttgag----cccaggag-gtgaaggctgcagtgagcggagattgcacc-actgccct
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       645163 63 -   3745603 catgagcgtcgcttgag----cccgggag-ctggaggttgcggtgaactgagtttgcacc-acgactct
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             429639 63 -  31380117 ctggaggttcacttgag----cccaggag-tttgaggttgaagtgagctatggttgagcc-attgcact
i otoGar3.GL873533          C 0 I 445
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             180818  0 +    584178 C
e canFam3.chr9               55248310 297 +  61074082 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I

a score=107185.000000
s hg38.chr15_KI270850v1_alt    224553 59 +    430880 gca-gcctgggacacagagtg-acact--ctctcaaaacaaaacaaaacaga----aaaacaaa---aaa
s panTro5.chr15              18034342 64 -  83230942 gcaggcctgggacacagagtgaacact---tctcaaaacaaaacaaaacaaacagcaaaacaaa---aaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76631819 56 +  99763055 cca-gcctgggccacagagtg-acact--GTCTcaaaacaaaacaaaac-------aaaacaaa---aAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       323095 50 +    378907 cca-gcctgggacacagagtg-acact--gtctcaaaacaaaacaga---------aaaaC-------Aa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102176958 60 + 121039945 cca-gcctgggacacagagtg-acact--gtccccaaacaaaacaaaacagaa---aaaaaaaa---aaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60396260 47 + 169600520 cca-gcctgggccacgcatggcactct--gtctcaaaacaaaaca-----------------aa---aaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65345047 59 + 171882078 cca-gcccgggacacagagtg-acact--gtctcaaaacaaaacaaaacaca----aaaaccaa---aaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5384705 59 -   6271500 cca-gcctgggacacagagtg-acact--gtctcaaaacaaaaccaaacgga----aaaaccaa---aaa
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1845884 45 -   1987038 cca-gcctgggccacgcatgg--cact--ctctcaaaacaaaaca-----------------aa---aaa
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5017827 39 -  54856640 cca-g---agcatccagagtg-atactctgtctcaca-----------------------caaa---aaa
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       645226 56 -   3745603 cca-gcctgggccacagagtg-acactctgtctcaaaacaaaac------------aaaTCAAATCGAAA
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             180818  0 +    584178 C
e canFam3.chr9               55248310 297 +  61074082 I
e otoGar3.GL873533             429702 445 -  31380117 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I

a score=441800.000000
s hg38.chr15_KI270850v1_alt    224612 112 +    430880 GACTCCTTAGATTCAAAC-TGGATTC-CGGCCTCGGTTCCACTGGTCATAATTCAACT-actttgcatctctaa-gtctctgtttctttaa-cttcaaaaggaagttagcctttt-cc-
s panTro5.chr15              18034406 113 -  83230942 GACT-TTAAGATTCAAAC-TGGATTCGCGGCCTC-GTTCCCCTGGTCATAATTCAACTCCCTTTGCATCTCTAATGTCTCTGTTTCTTTAAGCTTC--AAGGATGTTAGCCTTTTCCC-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76631875 113 +  99763055 GCCTCCTTAGATTCAAAC-TGGATTC-CGACCTCGGTTCCACTGGTCACCattcaact-acttttcatctctta-gtctctgtttctgtaaacttcaaaaggaagttagcctttt-cc-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       323145 112 +    378907 gactccttagattcaaac-tggattc-cggccttggttccactggtcataattcaact-actttgcatctctaa-gtctctgtttctttaa-cttcaaaaggaagttagcctttt-cc-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177018 112 + 121039945 GACTCCTTAGATTCAAAC-TGGATTC-TGACCTCGGTTCCACTGGTCATAATTCAACT-actttgcatctctaa-gtctctgtttctttaa-cttcaaaaggaagttagcctttt-cc-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60396307 112 + 169600520 GCCTCCTTGGATTCAAAC-TGGATTC-CAGCCTCCATTCCACTGGTCACCATTCAACT-acttttcatctctaa-gtctctgtttctttaa-cttcaaaaggaagttagcatttt-cc-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65345106 111 + 171882078 G-TTCCTTAGATTCAAAC-TGGTTTC-TGGACTCAGTTCTACTGGTTATCATTCAACT-actttgcatttctaa-gtctctgtttctttaa-cttcaaaaggaagttagcatttt-ct-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5384764 112 -   6271500 GACTCCTTACATTCGAAC-TGGATTT-CGGCCTCAGTTCCACTGGTTATCATTcaagt-accttgcatctctac-atctctgtttccttaa-cttcaaaaggaagttagcgtttt-cc-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1845929 112 -   1987038 GCCTCCTTGGATTCAAAC-TGGATTC-CAGCCTCCATTCCACTGGTCACCATTCaact-acttttcatctctaa-gtctctgtttctttaa-cttcaaaaggaagttagcatttt-cc-
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5017866 112 -  54856640 GGCTTCTTAGACTCAAAC-TGGATTC-TGGCGTCGCTTCCGCTCGTCACCACTGAACT-Tctttacatctctaa-gcctctgtttctttca-tttcaaaaggaagttagtatttt-cc-
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       645282 110 -   3745603 GTCTCCTTAGA-TCCAAC-TGGATTC-CGGCCTTGATTCCGCTGGTCACCATTCGACT-actttgcatctctac--tctctgtttctttaa-cttccaaaggcagttagcatttt-cc-
i aotNan1.NW_018511953v1    C 0 C 0
s dasNov3.JH564958             180818 105 +    584178 GGCTCCTTGGATTCCAACTTGAATTC-TCCTTTTGGCTGCACTGGTCACTATTCA----------CATCTCTAA-GCATCATTTTCTTTAA-CTTGACAAGGAGATTAGCATTTT-TCC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55248310 297 +  61074082 I
e otoGar3.GL873533             429702 445 -  31380117 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337329  50 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I

a score=137949.000000
s hg38.chr15_KI270850v1_alt    224724 36 +    430880 ttgcagag-gtgctgaggatt-aaatgagata-atacgt
s panTro5.chr15              18034519 38 -  83230942 TTGCAGAGAGTACTGAGGATTAAAATGAGATT-ACTCGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76631988 36 +  99763055 ttgcagag-gtgctgaggatt-gaatgagaga-atacct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       323257 36 +    378907 ttgcagag-gtgctgaggatt-aaatgagata-atacgt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177130 36 + 121039945 ttgcagag-ctgctgaggatt-acatgagata-atacgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60396419 36 + 169600520 ttacggag-gtgctgaggatt-aaatgagaga-atacat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65345217 36 + 171882078 ttgcagag-gtgctgaggatt-aaatgagata-acacac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5384876 36 -   6271500 ttgcagag-gtgctgaggatt-aaatgagata-acacat
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1846041 36 -   1987038 ttacggag-gtgccgaggatt-aaatgagaga-atacat
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5017978 36 -  54856640 ttgtggag-gtgctgagcatt-aaatgtgatg-ctatgt
i saiBol1.JH378108          C 0 I 1
s aotNan1.NW_018511953v1       645392 36 -   3745603 ttgcgcgg-gtgctgaggatt-aaatgagatg-ctgcgt
i aotNan1.NW_018511953v1    C 0 I 1
s canFam3.chr9               55248607 37 +  61074082 ctgcccag-gtgtcaagaatt-aaatgagaagcatgcct
i canFam3.chr9              I 297 C 0
s dasNov3.JH564958             180923 19 +    584178 ---------TCACAGAGGATT-A----------ATGCAT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e otoGar3.GL873533             429702 445 -  31380117 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337329 50 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I

a score=427832.000000
s hg38.chr15_KI270850v1_alt    224760 88 +    430880 ggaaa-cattaggcatgta--gcacacttagcagatggtGGTTGGCTCCGCCTGCTTTTCCACCAGTCTGTGGCCTACAGTTTACATGCTG
s panTro5.chr15              18034557 84 -  83230942 GGAAA-CATT-GGCATGTG--GCA-ACGTAGCAGATGGT-GTTGGCTCCG-CTGCTTTTCCACCAGTCTGTGGCCTACAGTTTAAATGCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76632024 89 +  99763055 ggaaagcattaggcatata--gcacacttagcagatggtggttGGCTCCCTCTGCTTTTCCACCAGTCTGTGGCCTACAGTTTAAATGGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       323293 88 +    378907 ggaaa-cattaggcatgta--gcacacttagcagatggtggttGGCTCCCCCTGCTTTTCCACCAGTCTGTGGTCTACAGTTTAAATGCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177166 88 + 121039945 ggaac-cattaggcatgta--gcacacttagcagatggtGGTTGGCTCCCCCTGCTTTTCCATCAGTCTGTGGCCTACAGTTTAAATGCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60396455 88 + 169600520 ggaaa-cattaggcatgta--gcacacttagcagatggtGGTTGGCTCCCTTTGCTTTTCCACCAGTCTGTGGCCTACAGTTTAAACGGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65345253 87 + 171882078 ggaaa-gagtaggcatgta--gtacacttagcagatggtggttGGCTCCCCCTGTT-TTCCACCAGTCTGTGGCCTACAGTTTAAATGATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5384912 88 -   6271500 ggaaa-cagtaggcatgta--gtacacttagcagatggtggttGGCTCTCCTTGCTATTCCACCAGTCCGTGGCCTACAGTTTAAATGGTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1846077 88 -   1987038 ggaaa-cattaggtatgta--gcacacttagcagatggtggttGGCTCCCTCTGCTTTTCCACCAGTCTGTGGCCTACAGTTTAAATGGTG
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       337379 87 -   1458659 GGAAA-CATTAGGCATGTA--GTACACTTAGCAGATGCTGGTTGGCTGACCCTGTT-TTCCACTAGTCCGTGGCCTACAGTTTAAATGATA
i manLeu1.NW_012105520v1    I 50 C 0
s saiBol1.JH378108            5018015 88 -  54856640 gaaag-cattaggtgcgca--gcacacTTAGCAGACGGTGGTTGGCTCCCTCTGCTTTTCCACCAGTCTGTGGCCTGTAGTTTAAATGGTG
i saiBol1.JH378108          I 1 C 0
s aotNan1.NW_018511953v1       645429 88 -   3745603 gaaag-cattagttatgta--gcacacttggcagatggtGGTTGGCTCCCTCTGCTCGTCCACCAGTCTGTGGCCTACAGTTTAAATGGTG
i aotNan1.NW_018511953v1    I 1 C 0
s canFam3.chr9               55248644 71 +  61074082 -gtaG-TGTGAGGCATTCAGGGCGCACT---CAGATGTCCATGGGCGCACTTTGCTTTTCCA------------CTAAAGTGAAAATA---
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             180942 55 +    584178 ------------------------GTCAAGGCATATGGT-GTTGGTT----CTGCTTTTCCACCAGTCTCTGGCCTAAAAGTTA-------
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e otoGar3.GL873533             429702 445 -  31380117 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I

a score=57577.000000
s hg38.chr15_KI270850v1_alt    224848 12 +    430880 GGAAAAAGGACG
s panTro5.chr15              18034641 11 -  83230942 GG-AAAAGGACG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76632113 12 +  99763055 GGAAGAAGGACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       323381 12 +    378907 GGAAAAAGGACG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177254 12 + 121039945 GGAAAAAGGACG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60396543 12 + 169600520 GGAAGAAGGAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65345340 12 + 171882078 GGGAAAAGCATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5385000 12 -   6271500 GGGAAAAGGATG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1846165 12 -   1987038 GGAAGAAGGAGA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       337466 12 -   1458659 GGGAAAAGGATG
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378108            5018103 12 -  54856640 GGAAGAAGGACG
i saiBol1.JH378108          C 0 I 1838
s aotNan1.NW_018511953v1       645517 12 -   3745603 GAAGGAAGGACA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             430147 12 -  31380117 GAAAAAAGGTTA
i otoGar3.GL873533          I 445 C 0
s canFam3.chr9               55248715 11 +  61074082 -GAAGGTGGTCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             180997  8 +    584178 ----AAAGGATG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I

a score=410656.000000
s hg38.chr15_KI270850v1_alt    224860 95 +    430880 TGAGATT-TGAT-GCTAGG-GAAGGAGGCATGGGGTTCTAAGCAAGGGAGACAGTCTCTTAGG-CCTGGAGCAAGG-GGCCAGGGGCCTGGGCAGGCCAC
s panTro5.chr15              18034652 94 -  83230942 TGAGATTCTGCTGGCTAGGTGAAGGA-GCATGGGGTTCTAGAC-AGGGAGCCAGTCTCTTAGG-CCT-GAGCAAGG-GGCCAGGGGCCTGGGCA-GCCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76632125 95 +  99763055 TGAGATT-TGAG-GCTGGG-GAAGGAGGTATGGGGTTCTAGGCAAGGGAGGAAGTCTCTTAGG-CCTGGAGCAAGG-GACCAGGGTCCTGGGCAGGTGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       323393 94 +    378907 TGAGATT-TGAG-GCTGGG-GAAGGAGGCATGGGGTTCTAGTCAAGGGAGGCAGTCTCTTAGG-GCTGGAGCAAGG-GGCCACGG-CCTGGGCAGGCCAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177266 95 + 121039945 TGAGATT-TAAG-GCTAGG-GAAGGAGGCATGGGGTTCTAGGCACGGGAGGCAGTCTCTTAGG-CCTGGAGCAAGG-GGGCAGGGGCCTGGGCAGGCCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60396555 95 + 169600520 TGAGATT-TGAG-GCTGGG-GGAAGAGGCATGGGGTTCTTGGCAAGGGAGGCAGTCTCTTAGG-CCTGGAGCAAGG-GGCCAGGGGCCTGGGCAGGTGAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65345352 95 + 171882078 TGAGATT-TGAG-GCTGGG-GAAGGATGCACTGGGTTCCAGGCAAAGGAGGCAGTCTCTTAGG-CCTGGAGCAAGG-GACCAGGGGCCTGGGTAGGCCAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5385012 95 -   6271500 TGAGATT-TGAG-GCTGGG-GAAGGACGCATGGGGTTCTAGGCAACGGAGGCAGTCTCTTAGG-CCTGGAGCAAGG-GACCAGGGGCCTAGGGAGGCCAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1846177 95 -   1987038 TGAGATT-TGAT-GCTGGG-GGAAGAGGCATGGGGTTCTTGGCAAGGGAGGCAGTCTCTTAGG-CCTGGAGCAAGG-GGCCAGGGGCCTGGGCAGGTGAC
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       337478 95 -   1458659 TGAGATT-TGAG-GCTGGG-GAAGGATGCATTGGGTTGCAGGCAAGGGAGGCAGGCTCTTAGG-CCTGGAGCAAGG-GACCAGGGGCCTGGGGAGGCAAC
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       645529 94 -   3745603 TGAGATT-TGAG-GCTGGG-GAAGGAGGCATGGGGTTCTAGGCAAGGGAGGCCGTCTCTTAGG--CTGGAGCCAGG-GTCCAGGCGCCTGGGCAGGCCAC
i aotNan1.NW_018511953v1    C 0 I 1023
s otoGar3.GL873533             430159 72 -  31380117 TGGGGTC-TGAG-GTTGAGTGAGGCAGGAACAGGGCTCTGTGCAAGGGAGATGGCCAGTCAGG-CCTGGAGCAAG-------------------------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55248726 97 +  61074082 TGAGGCA-TGAG-GAAGGGTAAGGGAAGTGTGGGTCCCTGGATATAGG-GGCAGTCACTGAAGTCCTAGAGCGAGGAAGCCAGGGGCCTGGGCGGGCCGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             181005 67 +    584178 ---------------AGAG-AAAAGAGTTGTGAGGTGTGAGGCTAGGG----------------CCTTATGCAAGG-AGGCCAGGGCCTGGGCAGGCAGC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5018115 1838 -  54856640 I

a score=657692.000000
s hg38.chr15_KI270850v1_alt    224955 144 +    430880 AGAGCCCCACAGTGCC----------------------CTCGCTACCCTATTAATGGGCCAGGAAT-CTGGAAGCCAGCCACCACATG-TCCTCATGCCCAGGGTCTTCCGGCAGGTGG--AGCTGAAGAGCCAAGAGGCTCCGAGTCTGCA-GCAGCAGCCAGACCAGTA
s panTro5.chr15              18034746 142 -  83230942 AGAGCCCCACAGTGCC----------------------CT--GTACCGTATTAATGGGCCAGGAATCCTGGAAGCCAGCCACCACATGTTCCTCA-GCCCA-GGTCTTCC-GCAGGTGGTAGGCTGAAG-GCCAAGA-GCTCCCAGTCTGCAGGCAGCAGCCAGACCACTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76632220 144 +  99763055 AGAGCCCCACAGTGCC----------------------CTAGCTACCCTATTAATGGGCCCAGAAC-CTGGAAGCCAGCCACCATGTG-CCCTCATGCCCAGGGTCTTCCTGCAGGTGG--AGATGAAGAGCCAAGAGTCTCAGAGTCTGCA-GCAGCAGCGAGACTAGTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       323487 144 +    378907 AGAGCCCCAAAGTGCC----------------------CTCGCTACCCTATTAATGGGCCAGGAAT-CTGGAAGCCAGCCACCACATG-CCCTCATGCCCAGGGTCTTCCGGCAGGTGG--AGCTGAAGAGCCAAGAGGCTCCAAGTCTGCA-GCAGCAGCAGGACCAGTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177361 144 + 121039945 AGATCCCCACAGTGCC----------------------CTCGCTACCCTATTAATGGGCCAGGAAT-CTGGAAACCAGCCACCACATG-TCCTCATGCCCAGGGTCTTCCTGCAGGTGG--AGCTGAAGAGTCAAGAGGCTCAGAGTCTGCA-GCAGCAGCCAGACCAGTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60396650 144 + 169600520 AGAGCCCCACAGTTCC----------------------CTTGCTACCCTATTAATGGGGCCAGAAT-CTGGAAGCCAGCCACCACGTG-CCCTCATGCCCAGGGTCTTCCTGCAGGTGG--AGCTGAAGAGCCAAGAGTCTCAGAGTCTGCA-GCAGAAGTGAGACTAGTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65345447 144 + 171882078 AGAGCACCACAGTGCC----------------------CTTGCTACCCTATTAATGGGCCAGGAAT-CCGGAAGCCAGCTAGTAAATG-CCCTCATGCCCAGGATCATCCTGCAGGTGG--AGCTGAAGAGCCAAGAGGCTCAGAGTCTGCA-GCAGCAGGGAGACCAGTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5385107 144 -   6271500 AGAGCCCCACAGTGCC----------------------CTTGCTACCCTATTAATGGGCCAGGAAT-CCGGAAGCCAGCTAGCAAATG-CCCTCATGCCCAGGGTCTTCCTGCAGGTGG--AGCTGAAGAGCCAAGAGGCTCAGAGTCTGCA-GCAGCAGGGAGACCAGTA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1846272 144 -   1987038 AGAGCCCCACAGTTCC----------------------CTTGCTACCCTATTAATGGGCCCAGAAT-CTGGAAGCCAGCCACCACGTG-CCCTCATGCCCAGGGTCTTCCTGCAGGTGG--AGCTGAAGAGCCAAGAGTCTCAGAGTCTGCG-GCAGAAGTGAGACTAGTA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       337573 144 -   1458659 AGAGCCCCACAGTGCC----------------------CTTGCTACCCTATTAATGGGCCAGGAAT-CCGGAAGCCAGCTAGTAAACG-CCCTCATGCCCAAGGTCTTCCTGCAGGTGG--AGCTGAAGAGCCAAGAGGCTCAGAGTCTGCA-GCAGCAGGGAGACCAGTA
i manLeu1.NW_012105520v1    C 0 C 0
s otoGar3.GL873533             430231 132 -  31380117 ----CCCCACAGTGCC----------------------CCCACTAC--------TGGGCTTAGAGT-CTGGAAGTAGGCTACCACCTT-CCCTCACGTCCAGGGTCTTCCTGCAGGTGG--AACTGAAGAATGAAGAGGCGAAGAGTCTACA-GCAGGAGAGAGATCAGTA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55248823 113 +  61074082 AGAGCCTCCCGCTTTC----------------------CTCTC--------------------AGC-ACGGGTGCCA------------GCCTTAGTCCCTGGGTCTTCCCACAGGTGG--AGCTGAAGAGCCAGGAGGCTCAGAATCTACA-GCAGCAGCGGGACCAGTA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             181072 164 +    584178 AGAGCCTTACCATTTCTGCACTGAGCAGACTTCTGTATCCCCCTTCCCTCTCG--GGGCGCAGAGT-CTGGAAGCAGTCCACGGCTCA-CCCTCACTTCCAGGGTCTTCCCGCAGGTGG--AGCTAAAGAGCAAAGAGGCTCAGGGTCTGCA-GGAGCAGCGGGACCAGTA
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       645623 1023 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e saiBol1.JH378108            5018115 1838 -  54856640 I

a score=25283.000000
s hg38.chr15_KI270850v1_alt    225099 4 +    430880 CCTG
s panTro5.chr15              18034888 4 -  83230942 TCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76632364 4 +  99763055 CCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       323631 4 +    378907 CCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177505 4 + 121039945 CTTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60396794 4 + 169600520 CCTG
i rheMac8.chr7              C 0 I 1932
s macFas5.chr7               65345591 4 + 171882078 CCTG
i macFas5.chr7              C 0 I 1383
s macNem1.NW_012011056v1      5385251 4 -   6271500 CCTG
i macNem1.NW_012011056v1    C 0 I 1868
s cerAty1.NW_012002657v1      1846416 4 -   1987038 CCTG
i cerAty1.NW_012002657v1    C 0 I 1926
s manLeu1.NW_012105520v1       337717 4 -   1458659 CCTG
i manLeu1.NW_012105520v1    C 0 I 1637
s saiBol1.JH378108            5019953 4 -  54856640 CCAG
i saiBol1.JH378108          I 1838 C 0
s otoGar3.GL873533             430363 4 -  31380117 TCTG
i otoGar3.GL873533          C 0 I 1561
s canFam3.chr9               55248936 4 +  61074082 CATG
i canFam3.chr9              C 0 I 1663
s dasNov3.JH564958             181236 4 +    584178 CCTG
i dasNov3.JH564958          C 0 I 1726
e aotNan1.NW_018511953v1       645623 1023 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e chlSab2.chr29              21075958 0 -  24206276 I

a score=-880.000000
s hg38.chr15_KI270850v1_alt    225103 1 +    430880 G
s panTro5.chr15              18034892 1 -  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76632368 1 +  99763055 G
i panPan2.chr15             C 0 I 142
s gorGor5.CYUI01015946v1       323635 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 I 13
s nomLeu3.chr6              102177509 1 + 121039945 T
i nomLeu3.chr6              C 0 I 13
s saiBol1.JH378108            5019957 1 -  54856640 G
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             431928 1 -  31380117 A
i otoGar3.GL873533          I 1561 C 0
e aotNan1.NW_018511953v1       645623 1023 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             181240 1726 +    584178 I
e canFam3.chr9               55248940 1663 +  61074082 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1846420 1926 -   1987038 I
e macNem1.NW_012011056v1      5385255 1868 -   6271500 I
e macFas5.chr7               65345595 1383 + 171882078 I
e rheMac8.chr7               60396798 1932 + 169600520 I

a score=519.000000
s hg38.chr15_KI270850v1_alt    225104 2 +    430880 -AG
s panTro5.chr15              18034893 2 -  83230942 -GG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       323649 2 +    378907 -AG
i gorGor5.CYUI01015946v1    I 13 C 0
s nomLeu3.chr6              102177523 2 + 121039945 -AG
i nomLeu3.chr6              I 13 C 0
s saiBol1.JH378108            5019958 2 -  54856640 -GG
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             431929 3 -  31380117 AGC
i otoGar3.GL873533          C 0 C 0
e aotNan1.NW_018511953v1       645623 1023 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             181240 1726 +    584178 I
e canFam3.chr9               55248940 1663 +  61074082 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1846420 1926 -   1987038 I
e macNem1.NW_012011056v1      5385255 1868 -   6271500 I
e macFas5.chr7               65345595 1383 + 171882078 I
e rheMac8.chr7               60396798 1932 + 169600520 I

a score=7056.000000
s hg38.chr15_KI270850v1_alt    225106 14 +    430880 C-CCCAGTCCCACAA
s panTro5.chr15              18034895 14 -  83230942 CACACAGT-CCACAG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       323651 14 +    378907 C-CCCGATCCCACAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177525 14 + 121039945 C-CCCAATCCCACAG
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378108            5019960 13 -  54856640 C-CCCAGCCCCCCA-
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             431932 13 -  31380117 C-CACAGCCCCCCA-
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55250603 10 +  61074082 C-CCCAGCCCA----
i canFam3.chr9              I 1663 C 0
s dasNov3.JH564958             182966 13 +    584178 C-CCCAGCCCCTCA-
i dasNov3.JH564958          I 1726 C 0
e aotNan1.NW_018511953v1       645623 1023 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1846420 1926 -   1987038 I
e macNem1.NW_012011056v1      5385255 1868 -   6271500 I
e macFas5.chr7               65345595 1383 + 171882078 I
e rheMac8.chr7               60396798 1932 + 169600520 I

a score=16558.000000
s hg38.chr15_KI270850v1_alt    225120 18 +    430880 GGAGCTTG-GATG-TGCGGA
s panTro5.chr15              18034909 19 -  83230942 GCAGGCTGTGGTG-TGCGGA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       323665 17 +    378907 G-AGCTTG-GGTG-TGCGGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177539 18 + 121039945 G-AGCTGG-GGTGTTGCTGA
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      5387123 18 -   6271500 GGAGCTTG-GGTG-TGCTGA
i macNem1.NW_012011056v1    I 1868 C 0
s saiBol1.JH378108            5019973 18 -  54856640 GCAGCTTG-GGAC-TGTCAA
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             431945 18 -  31380117 GGAGCTTG-GAGC-TACCAA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55250613 18 +  61074082 AGAGCTTG-GTGC-TGCCAA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             182979 18 +    584178 GGAGCTTG-GAGC-TGGCAA
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       645623 1023 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1846420 1926 -   1987038 I
e macFas5.chr7               65345595 1383 + 171882078 I
e rheMac8.chr7               60396798 1932 + 169600520 I

a score=10501.000000
s hg38.chr15_KI270850v1_alt    225138 5 +    430880 CAAGC-
s panTro5.chr15              18034928 5 -  83230942 CAAGC-
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       323682 4 +    378907 -AAGC-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177557 5 + 121039945 CAAGC-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60398730 5 + 169600520 CAAGC-
i rheMac8.chr7              I 1932 C 0
s macNem1.NW_012011056v1      5387141 5 -   6271500 CAAGC-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1848346 5 -   1987038 CAAGG-
i cerAty1.NW_012002657v1    I 1926 C 0
s saiBol1.JH378108            5019991 5 -  54856640 CAAGC-
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             431963 5 -  31380117 CAAGC-
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55250631 4 +  61074082 -TGGC-
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958             182997 5 +    584178 -TGGCC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       645623 1023 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e macFas5.chr7               65345595 1383 + 171882078 I

a score=269808.000000
s hg38.chr15_KI270850v1_alt    225143 86 +    430880 AGGGTGGTGAGTAGAGCCCTC-----AGGCGGGGTGGGCAGGC-AGGAGCAGGGGAGGCTCGCAC-----TGTGCCCAGATTCCCACCCC-CTCCCTC
s panTro5.chr15              18034933 84 -  83230942 AGAGTGATGAGTAAAGCCCTC-----AGGGCGGGT-GGCAGGCAAGGAGCA-GGGAGGCTCGCAC-----TGTGCTCAGA-TGCCACCCC-CTCCCTC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       323686 87 +    378907 AGGGTGGTGAGTAGAGCCCTC-----AGGCGGGGTGGGCAGGC-AGGAGCAGGGGAGGCTTGCAC-----TGTGCTCAGATTCCCACCCCTCTCCGTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177562 87 + 121039945 AGGGTGGTGGGTTGAGCCCTC-----AGGTGGGGTGGGCAGTC-AGGAGCAGGGGAGGCTCCCAC-----TGTGCTCAGATTCCCACCCCCCTCCCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60398735 83 + 169600520 AGGGTGGTGAGTAGAGCCCTC-----AGGTGGGGTGGGCAGGC-AGGAGCAGGGGAAGCTGGCCC-----TGCACTGAGATCCCTGC----CTCCCTC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5387146 83 -   6271500 AGGGTGGTGGGTAGAGCGCTC-----AGGCGGGGTGGGCGGGC-AGGAGCAGGGGAGGCTCGCAC-----TGACCTCAGATCCCCTC----CTCCCTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1848351 83 -   1987038 AGGGTGGTGAGTAGAGCCCTC-----AGGTGGGGTGGGCAGGC-AGGAGCAGGGGAGGCTGGCCC-----TGCACTGAGATCCCTGC----CTCCGTC
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5019996 83 -  54856640 AGGGTGGTGAGTGGAGCCCTC-----AGGCAGGGTGGGCAGGC-GGGAGCAGGGGAGACTCACCC-----TGAGCTGAGATCCCCA---C-CTCCCTC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       646646 87 -   3745603 AGGGTGGTGAGTAGAGCCCTC-----AGGCGGGGTGGGCAGGCAGGAAGCAGGGGAGGCTGGCAC-----TGTGCTCAGATCCCCACTCC-CTCTCTC
i aotNan1.NW_018511953v1    I 1023 I 846
s otoGar3.GL873533             431968 78 -  31380117 AGGGTGGTGAGTAGAGCCCTT-----GGGCAGGGTGG---GGC-AGGAGCAGGGGAAGGCTACAA-----GTGGCTCAGAGCCCTGCTC--CTC----
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55250636 78 +  61074082 AGGGTGGTGAGTAGAGCCCTC-----AGGGTGGGTGGG----------GCGGGGAGAGCTCGCAC-----AGCACTCAGAGCCCTGTTTCTTTCTCTC
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958             183002 87 +    584178 ---AGGGTGAGTAGAGCCCTCTCAGAAAGGTGGAAAGGCAGGT-AGAAGCAGGGGAGA---GCACAGAAGGGTGCTCAGAGCCCTGC----CTTTCTC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e macFas5.chr7               65345595 1383 + 171882078 I

a score=366532.000000
s hg38.chr15_KI270850v1_alt    225229 154 +    430880 TCTCTG-------AA-GATCTTAGTGAGCTGAGCCT------CACTGATAGCTTGGAGGCTGCACCGGGAGAGGACAGGGAGGGTTC---TCCCCCATGACAAC-CCCACTG-CACAGCAGAT-CCAGCAGCTGCTTCCTCTAATGCAGGACTCCCCAGGAGCA-CCCAGGCTTG
s panTro5.chr15              18035017 152 -  83230942 TCTCTG-------AAGGATCTTAGTGA-CT----CT------CACTGATAGCATGGAGGCTC--CCGGGAGAGGACAGGGAGGGTTC---TCCGCCATGACAACAGCCACTGTCACAGTAGATGCCAGCAGCTGCTTCCTCTAATGCAGGACTCCCCAGGAGCAGCCCAGGCTTG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       323773 153 +    378907 TCTCTG-------AA-GATCTTAGTGAGGTGAGCCT------CACTGATAGCGTGGAGGCGGCACCAGGAGAGGACAGGGAGGGTTC---TCC-CCATGACAAC-CCCACTG-CACAGCAGAT-CCAGCAGCTGCTTCCTCTAATGCAGGACTCCCCAGGAGCA-CCCAGGCTTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177649 153 + 121039945 TCTCTG-------AA-GATCTTTATGAGGTGAGCCT------CACTGATAGCGTGGAGCCTGCACCAGGAGAGGACAGGGGGGGTTC---TCC-CCATGACAAC-CCCACTG-CACAGCAGAT-CCAGCAGCTGCTTTCTGTAATGCAGGACTCCCCAGGAGCA-CCCAGGCTTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60398818 152 + 169600520 TCTCTG-------AA-GATTTTTCTGAGGTGAGCCT------GGACAACAGCGTGGAGCCCACACCAGGAGAGGCCAGGAAGGGTTC---TCC-CCATGACAAC-CCCACTG-CAGAGCAGAT-CGTGCACCTGCTTCCTGTAATGCAGGAC-ACCCAGGAGCA-CCCAGGCTTG
i rheMac8.chr7              C 0 I 11
s macNem1.NW_012011056v1      5387229 151 -   6271500 TGTCTG-------AA-GATCTTCGTG-GCTGAGCCT------CACTGACAGCGTGGAGCCTGCACCAGGAGAGGCCAGAGAAGGTTC---TCC-CCACGACAAC-CCCACTG-CACAGCAGGT-CGTGCAGCTGCTTCCTCTGACGCAGGACTCCCCAGGAGCA-CCGAGGCTT-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1848434 152 -   1987038 TCTCTG-------AA-GATTTTTATGAGGTGAGCCT------GGACAACAGCGTGGAGCCCGCACCAGGAGAGGCCAGGAATGGTTC---TCC-CCATGACAAC-CCCACTG-CAGAGCAGAT-CGTGCACCTGTTTCCTGTAATGCAGGAC-ACCCAGGAGCA-CCCAGGCTTG
i cerAty1.NW_012002657v1    C 0 I 11
s saiBol1.JH378108            5020079 149 -  54856640 TCTCCA-------AA-GATCTTTGTGAGGTGAGCCT------CGCAGACAGCATGGAGCCTG---CAAGAGACGCCAGGGAGCGTTC---TGC-CCAGGGCAAC-CCCACTG-TAGGAAACAT-CGTGCAGCCGCCTTGTGAAATG-AAGACCTTCCAGGAGCA-CCCAGGCTTG
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             432046 153 -  31380117 TCTCCA-------AAAGATTTTTATGAGGTGAGCCT------CAGTGATAACATGGAACCTGCACGAGGAGAGGCCAGGGAGGTGTC---TCC-GCCTGAGGAC-CCCACTA-CTCAGCAGAT-CATGCAACTGCTCCGTGAAATCCAGAAC-CCGCAGGAGCG-CCCAGGCTTG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55250714 167 +  61074082 TCCCTGACCCACAAA-GATCTTCGAGAGGTGAGCCTGGCTGACAATGATAATGTGGCACCTCCTCAGGGAGAGGCCCTACCAGGCCACAGTGC-CCCTGAGAAC-CCCACTG-CACAGCAAAT-CATGCAGCTTCTGCAGGAGATGCAGAAT-CCCCAGCCATA-CCTAGGTTT-
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             183089 131 +    584178 TCTCCT-------CA-GACCTTCACGAGGTGAATTT------GGCAGATGATGGGGAACCTGTAAAAGGAG---------------C----------TGAGAAT-CCCACTG-CCCAGCAAAT-TATGCAACTGCTACGTGAGATTCAAAAC-CCCCAGAATCA-CCCAGGCCTG
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       646733 846 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macFas5.chr7               65345595 1383 + 171882078 I

a score=2134.000000
s hg38.chr15_KI270850v1_alt    225383 5 +    430880 AGTGG
s panTro5.chr15              18035169 4 -  83230942 -GTGG
i panTro5.chr15             C 0 I 1
s gorGor5.CYUI01015946v1       323926 5 +    378907 GGTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177802 5 + 121039945 GCTGG
i nomLeu3.chr6              C 0 C 0
s otoGar3.GL873533             432199 5 -  31380117 GGCAG
i otoGar3.GL873533          C 0 I 78
s dasNov3.JH564958             183220 2 +    584178 ---GG
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       646733 846 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55250881 0 +  61074082 C
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1848586 11 -   1987038 I
e macNem1.NW_012011056v1      5387380 0 -   6271500 C
e macFas5.chr7               65345595 1383 + 171882078 I
e rheMac8.chr7               60398970 11 + 169600520 I
e saiBol1.JH378108            5020228 0 -  54856640 C

a score=-37487.000000
s hg38.chr15_KI270850v1_alt    225388 44 +    430880 AGAA--GCTG-TTGGTACAGGAGAGGCGGCAGG-AGGA-GCAGGAG-AGG
s panTro5.chr15              18035174 49 -  83230942 AGAATGGCTGTTTGGTA-AGGAGAGGCGGCAGGCAGGAGGCAGGAGAAGG
i panTro5.chr15             I 1 C 0
s gorGor5.CYUI01015946v1       323931 44 +    378907 AGAA--GCTG-TTGGTACAGGAGAGGCGGCAGG-AGGA-GCAGGAG-AGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177807 44 + 121039945 AGAA--GCTG-TTGGTACAGGAGAGGCGGCAGG-AGGA-GCAGGAG-AGG
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      5387380 12 -   6271500 --------------------GCGCAGCAACCC------------------
i macNem1.NW_012011056v1    C 0 C 0
s saiBol1.JH378108            5020228 11 -  54856640 ------------------GGCAGAAACCC---------------------
i saiBol1.JH378108          C 0 C 0
s canFam3.chr9               55250881 12 +  61074082 ----------------AAGCAAGAATCC----------------------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             183222  9 +    584178 -------------------CAACAGCCC----------------------
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       646733 846 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1848586 11 -   1987038 I
e macFas5.chr7               65345595 1383 + 171882078 I
e rheMac8.chr7               60398970 11 + 169600520 I

a score=139413.000000
s hg38.chr15_KI270850v1_alt    225432 56 +    430880 CTGCATGCCATTCTTTT--CGGGCTGCCGAGAA-CAGGGAGCTAAA-CATCACCATCATC
s panTro5.chr15              18035223 56 -  83230942 CTGCATGCGATTTCTTT--TCGGCTGCCGAGAAGCAGGGAGATAAG-CATCACCATCAT-
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       323975 56 +    378907 CTGCATGCCATTCTTTT--CGGGCTGCCGAGAA-CAGGGAGATAAA-CATCACCATCATC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177851 56 + 121039945 CTGCATGCCATTCTTTT--CGGGCTGCCGAGAA-CAGGGAGATAAA-CATCACCATCATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60398981 58 + 169600520 CTGCATGCCATTCTTTTACCGGGCATCCGAGAA-CAGGGAGATAAA-CATCATCATCATC
i rheMac8.chr7              I 11 C 0
s macNem1.NW_012011056v1      5387392 57 -   6271500 CTGCATGCTATTCTTTT--CGGGCTGCCAAGAA-CAGGGAGATAAACCATCACTATCATC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1848597 58 -   1987038 CTGCATGCCATTCTTCTACCGGGCATCCGAGAA-CAGGGAGATAAA-CATCATCATCATC
i cerAty1.NW_012002657v1    I 11 C 0
s saiBol1.JH378108            5020239 58 -  54856640 CTATGTGCCATTTTTTTACCAGTCTGCCAAGAA-CAGGGAGATCAG-CATCACCATCTTC
i saiBol1.JH378108          C 0 C 0
s canFam3.chr9               55250893 58 +  61074082 CTGCGTCCCCTTCTTCTACCGGGCTGATGACAA-TGACGAGGTGAA-GATCCTGGTGATC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             183231 58 +    584178 CTGCATCCCATTCTTTTACCGGGCTGATGAGAA-CGAACAAGTGAA-GATTATCATCATC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       646733 846 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e macFas5.chr7               65345595 1383 + 171882078 I

a score=17184.000000
s hg38.chr15_KI270850v1_alt    225488 7 +    430880 TAAGA-GC
s panTro5.chr15              18035279 8 -  83230942 TAAGAGGC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       324031 7 +    378907 TAAGA-GC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177907 7 + 121039945 GAAGA-GC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60399039 7 + 169600520 TAAGA-GC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5387449 7 -   6271500 TAAGA-GC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1848655 7 -   1987038 TAAGC-GC
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5020297 7 -  54856640 TAAGA-GC
i saiBol1.JH378108          C 0 C 0
s canFam3.chr9               55250951 7 +  61074082 TAAGA-GC
i canFam3.chr9              C 0 I 2
e aotNan1.NW_018511953v1       646733 846 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289 0 +    584178 C
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e macFas5.chr7               65345595 1383 + 171882078 I

a score=137459.000000
s hg38.chr15_KI270850v1_alt    225495 89 +    430880 GGGTCAAGAAATTGAAAAAAAAAAA----CAAAACATTTAAGGGGTTAATATCCTACACAATTCATTTACTTCATTTG--AATGTTAGAGCCACT
s panTro5.chr15              18035287 87 -  83230942 GGGTCAAGAAATTTAAAAAAAACAA----CAAA--CTTTAAGGGGTTAATATCCTACACAATTCA-TTACTTCATTTGACAATGTTAGA-CCACT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       324038 84 +    378907 TGGTCAAGAAATTAAAAAAAAAA-------AAA--AGTTAAGGGGTTAATCTCCCACACAATTCATTTACTTCATTTG--AATGTTAGAGCCACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177914 85 + 121039945 TGGTCAAGAAATTAAAAAAAAAAA------AAA--AGTTAAGGGGCTAATCTCCTACACAATTCATTTACTTCATTTG--AAAGTTAGAGCCACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60399046 91 + 169600520 TGGTCAAGAAATTGAAAAACAACAACAACAAAA--AGTTATGGCGTTAATCTCGTACACGATTCATTTACTTCATCTG--AATGTTAGAGCCACT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5387456 83 -   6271500 TGGTCAAGAA----AAAAAAAATAA----AAAA--ACTTAAGGGGTTAATCTCCTACACAATTCATTTACTTCATTTG--AATGTTAGAGCCACT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1848662 91 -   1987038 TGGTCAAGAAATTGAAAAACAACAACAACAAAA--AGTTATGGCGTTAATCTCGTACACAATTCATTTACTTCATCTG--AATGTTAGAGCCACT
i cerAty1.NW_012002657v1    C 0 I 7
s saiBol1.JH378108            5020304 82 -  54856640 TGGGCAAGAAATTTAAAAACCAAA------ACA--ACTTTTGGTGTTAATCT---ACACAATTCGTTAACTTTATCTG--GATGTTAGAGCCACT
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018511953v1       646733 846 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958  2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e macFas5.chr7               65345595 1383 + 171882078 I

a score=2385.000000
s hg38.chr15_KI270850v1_alt    225584 2 +    430880 TA
s panTro5.chr15              18035374 2 -  83230942 TA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       324122 2 +    378907 TA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102177999 2 + 121039945 TA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60399137 2 + 169600520 CA
i rheMac8.chr7              C 0 I 3
s macNem1.NW_012011056v1      5387539 2 -   6271500 CA
i macNem1.NW_012011056v1    C 0 I 1
s saiBol1.JH378108            5020386 2 -  54856640 CA
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018511953v1       646733 846 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289 0 +    584178 C
e canFam3.chr9               55250958 2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1848753 7 -   1987038 I
e macFas5.chr7               65345595 1383 + 171882078 I

a score=-4346.000000
s hg38.chr15_KI270850v1_alt    225586 4 +    430880 ---TGTT
s panTro5.chr15              18035376 3 -  83230942 ---TGC-
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       324124 2 +    378907 ---TG--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102178001 2 + 121039945 ---TG--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60399142 1 + 169600520 ---T---
i rheMac8.chr7              I 3 I 1
s saiBol1.JH378108            5020388 4 -  54856640 TGAT---
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018511953v1       646733 846 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289 0 +    584178 C
e canFam3.chr9               55250958 2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1848753 7 -   1987038 I
e macNem1.NW_012011056v1      5387541 1 -   6271500 I
e macFas5.chr7               65345595 1383 + 171882078 I

a score=19279.000000
s hg38.chr15_KI270850v1_alt    225590 111 +    430880 TGTGTTTCTaatttatagtttaaatttatttgtgtttctaatttatagtttaaatttatt--tgtttctaatttatagtttaaatttatttgtgtttctaatttatagtttaa
s panTro5.chr15              18035379  58 -  83230942 ------------------------TTTATTTG---------------------------T--TGTTTCTAA-TTATAGTTTAAATTTATTTGTGTTTCTAATGTATAG-TTAA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       324126  87 +    378907 ------------------------TTTATTTGTGTTTCTAATTTATAGTTTAAATTTATTTGTGTTTCTAATTTATAGTTTAAATTTATT--TGTTTCTAATTTATTGTTTAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102178003  59 + 121039945 ------------------------TTTATTTG------------------------------TGTTTCCAATTTATAGTTTAAATTTATTTGTGTTTCTAATTTACAGTTTAA
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378108            5020392  44 -  54856640 --------------------------TCTTTG------------------------------TGTTTCTCATTTA-----TACATTTCTT--TGTTTATAA------GTTTAG
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018511953v1       646733 846 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289   0 +    584178 C
e canFam3.chr9               55250958   2 +  61074082 I
e otoGar3.GL873533             432204  78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1848753   7 -   1987038 I
e macNem1.NW_012011056v1      5387541   1 -   6271500 I
e macFas5.chr7               65345595 1383 + 171882078 I
e rheMac8.chr7               60399143   1 + 169600520 I

a score=2705.000000
s hg38.chr15_KI270850v1_alt    225701 4 +    430880 -attt
s panTro5.chr15              18035437 4 -  83230942 -ATTT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       324213 4 +    378907 -ATTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102178062 4 + 121039945 -ATTT
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      5387542 4 -   6271500 -ATTT
i macNem1.NW_012011056v1    I 1 C 0
s saiBol1.JH378108            5020436 4 -  54856640 CATT-
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018511953v1       646733 846 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289 0 +    584178 C
e canFam3.chr9               55250958 2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1848753 7 -   1987038 I
e macFas5.chr7               65345595 1383 + 171882078 I
e rheMac8.chr7               60399143 1 + 169600520 I

a score=579379.000000
s hg38.chr15_KI270850v1_alt    225705 355 +    430880 atttgtg--tttctaatttataatttaaattt-atttgtaaaAAGTTAAATGAGAGTGGGTCTTTCTCTCATGTTCACTCTGGCATCTTTTAGCATT----TTTTTAA-TTTGATAATTATAGGACGTTAGCATGCATATCGAGTTTGCCCTTATGTGGTGGGAGTTCAAACACACAAAGACCCACTGTA--TGCACACAACTGTTCTTGCTGGTTTGGGATAGGCTGCCATGCTT-TTT-TAA-TGTTAGTACAGCCT--GTATATTCATTACGGAATTCAGATAAAATTTCCTTATG-TTCTGCTGTTATGTTTGATCGAATCCTAATCACAGTGAGCTCTTCATT--AGCTCAATATGTGGTTTGCCCTC
s panTro5.chr15              18035441 355 -  83230942 A-TTGTG---TTCTAAGTTATAATTTTAATTTAATTTGTAAAAAGTT-AATGAGAGTGGGTCTTTCCCTCATGTTCACTCTGGCATCCTTTAGCATT----TTTTAAACTTTGATAATTATAGGAGCT--GCATGCATATCGAGTTTGCCCTTATGTGGT-GGAGTTCAAACACACAAAGA-CCACTGTAATCGCACACAACTGTTC-TGCTGGTTT-GGATAGGCTGCCTGGCCTGTTT-TAACTGTTAGTACAGCCTTGTTATATTCATT-CGGAA-TCAGATAAAATTTCCTTATGTTTCTGCTGTTATGTTTGATCGAATCCTAATCACAGGAGCCTCTTCATGTAAGCTCAATATGTGGTTTGCCCTC
i panTro5.chr15             C 0 I 79
s gorGor5.CYUI01015946v1       324217 351 +    378907 ATTTG-----TTTTTATTTATAGTTTAAATTT-ATTTGTAAAAGGTTAAATGAGAGTGGGTCTTTCTCTCATGTTCACTCTGGCATCTTTTAGCATT----TTTTAAAATTTGATAATTATAAGCGTT-AGCATGCATATCAAGTTTGCCCTTATGTGGTGGGAGTTCAAACACACAAAGACCCACTATA--TGCACACAACTGTTT-TGCTGGTTTGGGATAGGCTGCCATGCTT-TTT-TAA-TGTTAGTACAGCAT--GTATATTCATTACAGAATTCAGATAAAATTTCCTTATG-TTCTGCTGTTATGTTTGATCGAATCCTAATCACAGTGAGCTCTTCATT--AGCTCAACATGTGGTTTGCCCTC
i gorGor5.CYUI01015946v1    C 0 I 65
s nomLeu3.chr6              102178066 357 + 121039945 ACTTGTG--TTTCTAATTTATAGTTTAAATTT-ATTTGTGTTTCTATAAAGGAGAGTGGGTCTTTCCCTCGTGTTCACTCTGGCATCCTTTAGCATT----TTTTTAAATTTGATAATTATAGGACGTTAGCATGCATATCGAGTTTGCCCTTATGTGGTGGGAGTTCAAACACACAAAGACCCACTATA--TGCACTCAACTGTTCTTGCTGGTTTGGGATAGGCTGCCATGCTTTTTT-TAA-TGTTAGTGCAGCAT--GTATATTCATTACGGAATTCAGATAAAATTTGCTTATG-TTCTGCTGTTATGTTTGATCGAATCCTAATCACAGTGAGCTCTTCATT--AGCTCAATATGTGGTTTGCCCTC
i nomLeu3.chr6              C 0 I 73
s rheMac8.chr7               60399144 360 + 169600520 ATTTGTG--TTTCTAATTTACAGTTTAAATTT-ATTTGTAGAAAATT-AGGGAGAGTGGATCTTTCCCTGATGTTCACTCTCGCATCCTTTAGCATTTTTGTTTTTTAATTTGATAATTGTAAGTCGTTAGCTCGCATATCGAGTTTGCCTTTACCTGGTAGGAGTTCAAGCACACAAAGACCCACTATT--TGCGCAAAATTATTCTTGCTGGTTTGGAATAGGCTGCCATGGTT-TTTAAAA-TGTTTTTGCAGCAT--GTATGTTCATTACAGAATTCAGATAAAATTTGCTTATG-TTCTGATATTATGTTTGCTCGAATCCTAATCACAGCGAGCTCTTCATT--AGCTCAATATATGGTTTGCCCTC
i rheMac8.chr7              I 1 I 75
s macNem1.NW_012011056v1      5387546 359 -   6271500 ATTTGTGTTTTTCTAATTTATAGTTTAAATTT-ATTTGTAAAAAGTTAAAGGAGAGTGGGTCTTTCCCTCATGTTCACTGTGACATCCTTTAGCACCTTTTTTTT---ATTTTATAACTGTAGGTTATTAGCATGCATATCGAGTTCGCCCTTAGGTGGTGGGAGTTCAAACACGCAAAGACCCACTATT--TGCACAAAACTGTTCTTGCAGGTTTGGAATAGGCTGCCATGTTT-TTT-TAA-TGTTATTGCAGCAT--GTATATTCATTACGGAATTCAGATAAAATTTGCCTATG-TTCTGCTAGTATGCTTGATCCACTCCTAATCACAGTGAGCTCTTCATT--AGCTCAATGTGTGGTTTGCCCTC
i macNem1.NW_012011056v1    C 0 I 73
s cerAty1.NW_012002657v1      1848760 360 -   1987038 ATTTGTG--TTTCTAATTTACAGTTTAAATTT-TTTTGTAGAAAATT-AGGGAGAGTGGATCTTTCCCTGATGTTCACTCTCGCATCCTTTAGCATTTTTGTTTTTTAATTTGATAATTGTAAGTCGTTAGCTCGCATATCGAGTTTGCCTTTACCTGGTGGGAGTTCAAGCACACAAAGACCCACTATT--TGCGCAAAATTATTCTTGCTGGTTTGGAATAGGCTGCCATGGTT-TTTAAAA-TGTTTTTGCAGCAT--GTATGTTCATTACAGAATTCAGATAAAATTTGCTTATG-TTCTGATATTATGTTTGATCGAATCCTAATCACAGCGAGCTCTTCATT--AGCTCAATATATGGTTTGCCCTC
i cerAty1.NW_012002657v1    I 7 I 75
s saiBol1.JH378108            5020440 277 -  54856640 ----------------------------AATT-ATTATTAA-----------------------------------------------TTTAGCAT-----TTTTCTGTTTTGATAATTGTAGGTGAATAGCATGCATATCGAGTTTGGCCTTACATGGTGGGAGTTCAAACACACAAAGACCCACTCTT--TGCACCAAACTCTTT-TGCTGGTTTGGAATAGGATGCCATGCTT-TTT-AAA-TGTTATTGCCGCAT--GTATACTTATTACGGAATTCAGATACAA----CTGATG-TTCTGCTATCACAGTTGGTCCGATCCTAATCACAGCGAGCTCTGAATT--AGCTCAATACGTGGTTTGCCCTC
i saiBol1.JH378108          C 0 I 75
e aotNan1.NW_018511953v1       646733 846 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289   0 +    584178 C
e canFam3.chr9               55250958   2 +  61074082 I
e otoGar3.GL873533             432204  78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macFas5.chr7               65345595 1383 + 171882078 I

a score=13581.000000
s hg38.chr15_KI270850v1_alt    226060 10 +    430880 TGGA-------AACAGC
s gorGor5.CYUI01015946v1       324633 17 +    378907 TGGAGCACTGAAACAGC
i gorGor5.CYUI01015946v1    I 65 C 0
s nomLeu3.chr6              102178496 10 + 121039945 TGGA-------AACAGC
i nomLeu3.chr6              I 73 C 0
s rheMac8.chr7               60399579 10 + 169600520 TGGA-------AACAGC
i rheMac8.chr7              I 75 C 0
s macNem1.NW_012011056v1      5387978 10 -   6271500 TGGA-------GAGAGC
i macNem1.NW_012011056v1    I 73 C 0
s cerAty1.NW_012002657v1      1849195 10 -   1987038 TGGA-------AGCAGC
i cerAty1.NW_012002657v1    I 75 C 0
s saiBol1.JH378108            5020792 10 -  54856640 TGGA-------AACAGC
i saiBol1.JH378108          I 75 C 0
e aotNan1.NW_018511953v1       646733 846 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958  2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e macFas5.chr7               65345595 1383 + 171882078 I
e panTro5.chr15              18035796 79 -  83230942 I

a score=372215.000000
s hg38.chr15_KI270850v1_alt    226070 177 +    430880 CTTTC--CCCCTTTTTCTGTGTATTGGGGATGGGAGTAATAACATTTTGGGGAGGTTTTTAAATCTCCCAGAAGAGGAAAGTGGCCTGCTTTGGCAGGTGTGTGCAG---GATAGAATATGTTTCATTTGTTCCGGTGCCAAGAATGAGCGCTGTACTACGGTAGTTCCCTTAGGATTTGTA
s panTro5.chr15              18035875 179 -  83230942 CTTTCCGCGCCTTTCTCTGTGTATTGGGGATGGGAGTAATAACATTTTGGGGAGCTTTTTAAATCTCCCAGAAGAGGAAAGTGGCCTGCTCTGGCAGGTGTGTGCAG---GATAGAATATGTTTCATTTGTTCTGGTGCCAAGAATGAGCACTGTACTACGGTAGTTCCCTTAGGATTTGCA
i panTro5.chr15             I 79 C 0
s gorGor5.CYUI01015946v1       324650 177 +    378907 CTTTC--CCCCTTTTTCTGTGTATTGGGGATGGGAGTAATAACATTTTGGGGAGGTTTTTAAATCTCCCAGAAGAGGAAAGTAGCCTGCTCTGGCAGGTGTGTGCAG---GATAGAATATGTTTCATTTGTTCCGGTGCCAAGAATGAGCACTGTACTATGGTAGTTCCCTTAGGATTTGTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102178506 177 + 121039945 CTTTC--CCCCTTTTTCTGTGTACTGGGGATGCGAGTAATAACATTTTGGGGAGCTTTTTAAATCTCCCAGAAGAGGAGAGTGGCCTGCTCTGGCAGGTGTGTGCAG---GATAGAATATGTTTCATTTGTTCCGGTGCCAAGAACGAGCACTGTACTATGGTAGTGCCCCTAGGATTTGTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60399589 177 + 169600520 CTTTC--CTCTATTTTCTATGTATTGGGGATGGGTGTAATAACATTTGGGGGAGCTTTTTAAATCTCACAGAAGAGGAAAGTGGCCTGCTTTGGCAGGTGCCTGCAG---GATACAGTGTGTTTCCTTCGTTCTGGTGCCAAGAATGAGCGCGGTACTATGGTAGTTCCCTTAGGATTTGTA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5387988 177 -   6271500 CTTTC--CCCCTTTTTCTGTGCATTGGGAATGGGAGGAGTAACACTTTGGGGAGCTTTTTAAATCTCCCAAAAGAGGAAAGTGGCCTGCTCTGGCAGGTGTGTACAG---GATAGAATATGTTTCACTTGTTCTGGTACCAACAATGAGTGTGGTACTATGGTAGTTCCCTTAGGATTTGTA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1849205 177 -   1987038 CTTTC--CTCTATTTTCTGTGTATTGGGGATGGGTGTAATAACATTTGGGGGAGCTTTTTAAATCTCACAGAAGAGGAAAGTGGCCTGCTTTGGCAGGTGCGTGCAG---GATACAGTGTGTTTCCTTCGTTCTGGTGCCAAGAATGAGCGCGGTACTATGGTAGTTCCCTTAGGATTTGTA
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5020802 177 -  54856640 CTTTC--CCCTGTTTTCTGTGTCTTTGGGATGGGAGTAATAACATTTTGGGGAGCTTTTTAAATTTCACAGGA---GAAAGTGGCCTACTCTGGCACTTGTGTGCAGAATAATAGAGTGTGCTTCATCGGTTCCCCAGCCAAGAATGAGCGCTGTACTATGGTAGTTCCCTTAGGGTTTTCC
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018511953v1       646733 846 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289   0 +    584178 C
e canFam3.chr9               55250958   2 +  61074082 I
e otoGar3.GL873533             432204  78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macFas5.chr7               65345595 1383 + 171882078 I

a score=246908.000000
s hg38.chr15_KI270850v1_alt    226247 95 +    430880 TGTGCTCTAGGCTCATG-AAGATACTGCCTCATGAGCTGTGGCAGTTGTACTCTTTTTTGATGACCTGAAAAGGGATTATTTCTGAGGAATGAAAG
s panTro5.chr15              18036054 95 -  83230942 TGTGCTCTGGGCTCATG-AAGATATTGCATCATGAGCTGTGGCAGTTGTACTCTTTTTTGACGACCTGAAAAGGGATTATTTCTGAGGAATGAAAG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       324827 95 +    378907 TGTGCTCTGGGATCATG-AAGATACTGCCTCATGAGCTGTGGCAGTTGTCCTCTTTTTTGACGACCTGAAAAGGGATTATTTCTGAGGAATGAAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102178683 95 + 121039945 TGTGCTCTGGGCTCATG-AAGATATTGCATCATGAGCTGTGGCAGTTGTACTCTTTTTTGACGACCTAAAAAGGGATTATTTCTGAGGAATGAAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60399766 95 + 169600520 TGTGCTCTGGGATCATG-AAGATACTGCATCATGAGCTGTGGCCTTTGTACTCTTTCTCAATGACCTAAAAAGGGATTATTTCTGAGGAAGGAAAG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5388165 95 -   6271500 TGTGCTCTGGGCTCATG-AAGATATTACATCATGAGCTGGGGCAGTTGTACTCTTTTTTGATGACCTAAAAAGGGGTTATTTCTGAGGAATGAAAG
i macNem1.NW_012011056v1    C 0 I 28
s cerAty1.NW_012002657v1      1849382 95 -   1987038 TGTGCTCTGGGCTCATG-AAGATATTGCATCATGAGCTGTGGCCGTTGTACTCTTTCTCAATGACCTAAAAAGGGATTATTTCTGAGGAGGGAAAG
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5020979 95 -  54856640 TGTGCTCTCGGCTCTTG-AAGATACTGCATCATGGGCTGCAGCAGCTGTACTCATTTTCAATGACCTACAAAGGGATGATTTCTGAGGAATCAAAG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       647579 90 -   3745603 TGTGCTCTGGGCTTATGAAAGATACTGCATCATGAGCTGTGGCAGC-GTAT---CTTTTTATGACCT--AAAAGAATGATTTCTGAGGACTAAAAG
i aotNan1.NW_018511953v1    I 846 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958  2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e macFas5.chr7               65345595 1383 + 171882078 I

a score=35195.000000
s hg38.chr15_KI270850v1_alt    226342 17 +    430880 GCTCCCATCA-TGACTGT
s panTro5.chr15              18036149 17 -  83230942 GCTCCCATCA-TGACTGT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       324922 17 +    378907 GCTCCCATCA-TGACTGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102178778 17 + 121039945 GCTCCCATCA-TGACTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60399861 18 + 169600520 GCTCCCATCATTGACTGT
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1849477 18 -   1987038 GCTCCCATCATTGACTGT
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5021074 18 -  54856640 GCTCCTATCGTTGACTAT
i saiBol1.JH378108          C 0 I 6
s aotNan1.NW_018511953v1       647669 18 -   3745603 GCTCCCATCTTTGACTGT
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958  2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e macNem1.NW_012011056v1      5388260 28 -   6271500 I
e macFas5.chr7               65345595 1383 + 171882078 I

a score=183214.000000
s hg38.chr15_KI270850v1_alt    226359 124 +    430880 GGATGTGGAAAACCTTTTCTAGCTGAGAGCATTTATATC-TACAATACATTTTAAAGTCAGAGTTCATGTTCC-CTGTTTTAATCACATGACTACATGTCCCAGTACACAAAAGGGCACTGGTTGG
s panTro5.chr15              18036166 124 -  83230942 GGATGTGGAAAACCTTTTCTAGCTGAGAGCATTTATATC-TACAATACATTTTAAAGTCAGAGTTCATGTTCC-CTGTTTTAATCACATGACTACATGTCCCAGTACACAAAAGGGCACTGGTTGG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       324939 124 +    378907 GGATGTGGAAAACCTTTTCTAGCTGAGAGCATTTATATC-TACAATACATTTTAAAGTCAGAGTTCGTGTTCC-CTGTTTTAATCACATGACTACATGTCCCAGTACACAAAAGGGCACTGGTTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102178795 124 + 121039945 GGATGTGGAAAACCTTTTCTAGCTTAGAGCATTTGTATC-TACAATACATTTTAAAGTCAGAGTTCATGTTCC-CTGTTTTAGTCACATGACTACATGTCCCAGTACACAAAAGGGCACTGGTTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60399879 122 + 169600520 GGATAGGGAAAACCTTTTCTAGCTTAGCGCA--AATATA-TACAATACATTTTAAAATCAGAGTCCATGTTAC-CTATTTCAATCACATGACTACAGGTCCCATCACACAAAAGGGCACTGGTTGG
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1849495 122 -   1987038 GGATAGGGAAAACCTTTTCTAGCTTAGCGCA--AATATA-TACAATACATTTTAAAATCAGAGTCCACGTTAC-CTATTTCAATCACATGACTACAGGTCCCATCACACAAAAGGGCACTGGTTGG
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       647687 123 -   3745603 GGATGTGG-AAACCTCTCCTAGCTTAGAGCATTTATAGCTTATAATACA-TGTAAAGTCAGAGTTCATGTTACGCTGTTTTA-TTACATGATCCAAGTCTCTAGTACACAAAAGGGCACTGGTTGG
i aotNan1.NW_018511953v1    C 0 I 865
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289   0 +    584178 C
e canFam3.chr9               55250958   2 +  61074082 I
e otoGar3.GL873533             432204  78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macNem1.NW_012011056v1      5388260  28 -   6271500 I
e macFas5.chr7               65345595 1383 + 171882078 I
e saiBol1.JH378108            5021092   6 -  54856640 I

a score=57400.000000
s hg38.chr15_KI270850v1_alt    226483 48 +    430880 CGTTCTCCTTAATGTATTTAGTAAAGATCAGAAGAAATCCTTTAAGAG
s panTro5.chr15              18036290 48 -  83230942 CATTCTCCTTAATGTATTTAGTAAAGATCAGAAGAAATCCTTTAAGAG
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       325063 48 +    378907 CATTCTCCTTAATGTATTTAGTAAAGATCAGAAGAAATCCTTTAAGAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102178919 48 + 121039945 CATTCTTCATGATGTATTTAGTAAAGATCAGAAGAAATCCTTTAAGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60400001 48 + 169600520 CATTCTTCTTTATGTAATTAGTAAAGATCATAAGAAATCCTTTCAGAG
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1849617 48 -   1987038 CATTCTTCTTTATGTAATTAGTAAAGATCATAAGAAATCCTTTCAGAG
i cerAty1.NW_012002657v1    C 0 C 0
e aotNan1.NW_018511953v1       647810 865 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958  2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e macNem1.NW_012011056v1      5388260 28 -   6271500 I
e macFas5.chr7               65345595 1383 + 171882078 I
e saiBol1.JH378108            5021092  6 -  54856640 I

a score=611902.000000
s hg38.chr15_KI270850v1_alt    226531 390 +    430880 TTTAAATGCCCCTGGAACAGGCATATACAGGCTCTAGTCAAGAATGAATTCGAGTGAAGGAAAGCTGTGTGACACCTGGCATTCCTCTGTGTTCATGGAGCTTATTTGAGGCTAGAAGATGGATTTTACCATCTAGACCTCTCTGGCTAATAGCTAGTCTTCAACCA----------TCTGACATAGGAATTTACTTCTTTTCCTTGAATGGAGAACACTTTAAAAATAATAACAAACATTATTATAAACTAATATATGTGAGAGTACTTAGTTGAAACAAAAAGGAGTTTTAGTAGACAGTATTATA---CTACATTTGAAAATCAAGGAGCAGTTTATGCAACGTAAAACGTTTACAAACTGCAGCACAATCTACTGTTCGTGAATGTCAAAGTGTCATGA
s panTro5.chr15              18036338 388 -  83230942 TTTAAATGTCCCTGGAACAGGC--ATACAGGCTCTAGTCAAGAATGAATTCGAGTGAAGGAAAGCTGCGTGACACCTGGCATTCCTCTATGTTCATGGAGCTTATTTGAGGCTAGAAGATGGATTTTACCATCTAGACCTCTCTGGCTAATAGCTAGTCTTCAACCA----------TCTGACATAGGAATTTACTTCTTTTCCTTGAATGGAGAACACTTTAAAAATAATAACAAACATTATTATAAACTAATATCTGTGAGAGTACTTAGTTGAAACAAAAAGGAGTTTTAGTAGACAGTATTATA---CTACATTTGAAAATCAAGGAGCAGTTTATGCAACTTAAAATGTTTACAAACTGCAGCGCAATCTACTGTTTGTGAATGTCAAAGTGTCATAA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       325111 390 +    378907 TTTAAATGTCCCTGGAACAGGCATATACAGGCTCTAGTCAAGAATGAATTTGAGTGAAGGAAAGCTGTGTGACACCTGGCATTCCTCTATGTTCATGGAGCTTATTTGAGGCTAGAAGATGGATTTTACCATCTAGACCTCTCTGGCTAATAGCTAGTCTTCAACCA----------TCTGACACTGGAATTTACTTCTTTTCCTTGAATGGAGAACACTTTAAAAATAATAACAAACATTATTATAAACTAATATATGTGAGAGTACCTAGTTGAAACAAAAAGGAGTTTTAGTAGACAGCATTATA---CTACATTTGAAAATCAAGGAGCAGTTTATGCAACTTAAAATGTTTACAAACTGCAGCGCAATCTACTGTTTGTGACTGTCAAAGTGTCATGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102178967 363 + 121039945 TTTAAATGTCCCTGGAACAGGC--ATACAGGCTCTAGTCAAGAATGAATTCGAGTGAAGGAAAGCTGTGTGACACCTGGCCTTCCTCTATGTTCATGGAGCTTATTTGAGGCTGGAAGATGGATTTTACCATCTAGACCTCTCTGGCTAATGCCTAGTCTTCAACCA----------TCTGACATAGGAATTTACTTCTTCTCCTTGAATGGA-AACACTTTAAAAATAATAAGAAACGTTACTATAAACTAATATATGTGACAGTACTTAGTTGAAACAAAAAGGAGTTTTAG---------------------------AAATCAAGGAGAAGTTTATGCAACTTAAAATGTTTACAAACTGCAGCGCAATCTACTGTTTGTGAATGTCAAAGTGTTATGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60400049 395 + 169600520 TTTTAATGTCCCTGGAACAGGC--ATACAGGCTTTAGTCAAGAATTAATTCTAGTGAAGGAAAGCTGTGTGACACCTGGCATTCCTCTATGTTCATGGAGCTTTTTTGAGACTAGAATATTGATTTTACCATCTAGACCTCTCTGGCTAATACCTTTTCTTCAACCACATAGGTTACTCTCACATAGGAATTTACTTCTTTTCCTTGAATGGAAAACACTTAAAAAATAACAAC---CATTATTATAAACCAATATATGTGAGAGTACTTAGTTGAAACAAAAAGAAGTTTTAGTAGACAGTATTCTA---CTACATTTGAAAATCAAGGAGATGTTTATGCAACTTAAAATGTGTACAAACTGCAGTGCAATCTACTGTTTGTGAATGTCAGAGTATTTTGA
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1849665 395 -   1987038 TTTAAATGTCCCTGGAACAGGC--ATACAGGCTTTAGTCAAGAATGAATTCTAGTGAAGGAAAGCTGTGTGACACCTGGCATTCCTCTATGTTCATGGAGCTTTTTTGAGGCTAGAATATTGATTTTACCATCTAGACCTCTCTGGCTAATACCTTTTCTTCAACCACATAGGTTACTCTCACATAGGAATTTACTTCTTTTCCTTAAATGGAAAACACTTAAAAAATAACAAC---CATTATTATAAACCAATATACGTGAGAGTACTTAGTTGAAACAAAAAGAAGTTTTAGTAGACAGTATTCTA---CTACATTTGAAAATCAAGGAGATGTTTATGCAACTTAAAATGTGTACAAACTGCAGTGCAATCTACTGTTTGTGAATGTCAGAGTATTTTGA
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       648675 395 -   3745603 TTTAAATGTCCCTGGAACAGAC--ATACAGGTTCTAGTCAAGAATGAATTAGAGTGCAGGAAAGCCATGTGACACCTGGCATCCCTCTCTGTTCATGGAGCTTCTTTGAGGCTAGAAGATTGATTTGACCATCCAGACTTCTCTGGCTAATACCTATTCTTCAACCACCTTGATTACTCTGACATAGGAATTGCCTTCTTTTTCTTGAATAGAAGGACTTTAAACAATAATCACAAACATTATTATAAACTAATATATGTGAGAGTACTTGGCTGAAACAAAAAGGAGTTTCAGTAGACAGAATTGTACTTCTATATTTGAAATTCAA------GTTTATGCAACTTAAAGTGTTCATAGACTGCAGTGCCATCTACTGTTTGTGAATGTCAAAGTATTATCA
i aotNan1.NW_018511953v1    I 865 I 1
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289   0 +    584178 C
e canFam3.chr9               55250958   2 +  61074082 I
e otoGar3.GL873533             432204  78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macNem1.NW_012011056v1      5388260  28 -   6271500 I
e macFas5.chr7               65345595 1383 + 171882078 I
e saiBol1.JH378108            5021092   6 -  54856640 I

a score=234758.000000
s hg38.chr15_KI270850v1_alt    226921 116 +    430880 GG-AAAGTGTCTATACAATCACAG-AGTTATATTTCCTCACAAAGTTCTTTACAAAGAGTGAAATATG------------TTTTTATACCTCTCAGTTTCAGTTAGAGGCATATTTTGTGTAATATTTAT
s panTro5.chr15              18036726 116 -  83230942 GG-CAAGTGTCTATACAATCACGG-AGTTATATTTCCTCACGAAGTTCTTTACGAAGATTGAAATATG------------TTTTTATACCTCTCAGTTTCAGTTAGAGGCATATTTTATGTAATATTTAT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       325501 116 +    378907 GG-AAAGTGTCTATACAATCACAG-AGTTATATTTCCTCACAAAGTTCTTTACGTAGAGTGAAATATG------------TTTTTATACCTCTCAGTTTCAGTTAGAGGCATATTTTGTGTAATATTTAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102179330 117 + 121039945 GGAAAAGTGTCTATACAATTTCAG-AGTTACATTTCCTCACAAAGTTCTTTACGAAGAGTGAAATATG------------TTTTTATGCCTCTCGGTTTCAGTTAGAGGCATATTTTGTGTAATATTTAT
i nomLeu3.chr6              C 0 I 459
s rheMac8.chr7               60400444 117 + 169600520 GGAAAAGTATCTATACAATTACAG-AGTTATATTTCCTCACAAAGTTCTTTATGAAGAGTGAAATATG------------TTCTTATACCTCTCAGTTTCAGTTAGAGGCATATTTTGTGTCATACTTAT
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1850060 117 -   1987038 GGAAAAGTGTCTATACAATTACAG-AGTTATATTTCCTCACAAAGTTCTTTATGAAGAGTGAAATATG------------TTCTTATACCTCTCAGTTTCAGTTAGAGGCATATTTTGTGTCATACTTAT
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5021098 129 -  54856640 -GAAAAGTGTCTATGCAATCACAAGACTTCTGCCTCCTCCCCAAATTCTTTATGAAGAGTTAAATATGTTTTTAAATATCTTTTTATATCTCTTGGTTTTAGTTAGAGGCATATTTTGTGCAATATTTAT
i saiBol1.JH378108          I 6 C 0
s aotNan1.NW_018511953v1       649071 114 -   3745603 -CAAAAGTGTCTGTACAATTACAG---TTTTATTTCCTCATCAAGTTCTTTACAAACAGTGAAATATG------------TTTTTATACCTTTCGGTTTCAGTTAGAGGCATATTTTGTGCAAGATTTAT
i aotNan1.NW_018511953v1    I 1 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289   0 +    584178 C
e canFam3.chr9               55250958   2 +  61074082 I
e otoGar3.GL873533             432204  78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macNem1.NW_012011056v1      5388260  28 -   6271500 I
e macFas5.chr7               65345595 1383 + 171882078 I

a score=2800.000000
s hg38.chr15_KI270850v1_alt    227037 1 +    430880 G
s panTro5.chr15              18036842 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       325617 1 +    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102179906 1 + 121039945 G
i nomLeu3.chr6              I 459 C 0
s rheMac8.chr7               60400561 1 + 169600520 G
i rheMac8.chr7              C 0 I 508
s cerAty1.NW_012002657v1      1850177 1 -   1987038 G
i cerAty1.NW_012002657v1    C 0 I 515
s saiBol1.JH378108            5021227 1 -  54856640 G
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018511953v1       649185 1 -   3745603 G
i aotNan1.NW_018511953v1    C 0 I 1848
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289 0 +    584178 C
e canFam3.chr9               55250958 2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e macNem1.NW_012011056v1      5388260 28 -   6271500 I
e macFas5.chr7               65345595 1383 + 171882078 I

a score=1000.000000
s hg38.chr15_KI270850v1_alt    227038 1 +    430880 G
s panTro5.chr15              18036843 1 -  83230942 G
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       325618 1 +    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102179907 1 + 121039945 G
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378108            5021228 1 -  54856640 G
i saiBol1.JH378108          C 0 I 1050
e aotNan1.NW_018511953v1       649186 1848 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289 0 +    584178 C
e canFam3.chr9               55250958 2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1850178 515 -   1987038 I
e macNem1.NW_012011056v1      5388260 28 -   6271500 I
e macFas5.chr7               65345595 1383 + 171882078 I
e rheMac8.chr7               60400562 508 + 169600520 I

a score=15351.000000
s hg38.chr15_KI270850v1_alt    227039 34 +    430880 CTTAAAATGGACTAAAGGTCCTGTTCTTGCC-----TTG
s panTro5.chr15              18036844 34 -  83230942 CTTAAAATGGACTACAGGTCCTGTTCTTGCC-----TTT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       325619 34 +    378907 CTTAAAATGGACTAAAGGTCCTGTTCTTGCC-----TTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102179908 39 + 121039945 TTTAAAATGGACTTAAGGTCCTGTTCTTGCCTTCTATTT
i nomLeu3.chr6              C 0 C 0
e aotNan1.NW_018511953v1       649186 1848 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958  2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1850178 515 -   1987038 I
e macNem1.NW_012011056v1      5388260 28 -   6271500 I
e macFas5.chr7               65345595 1383 + 171882078 I
e rheMac8.chr7               60400562 508 + 169600520 I
e saiBol1.JH378108            5021229 1050 -  54856640 I

a score=1010.000000
s hg38.chr15_KI270850v1_alt    227073 2 +    430880 TC
s panTro5.chr15              18036878 2 -  83230942 TC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       325653 2 +    378907 TC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102179947 2 + 121039945 TG
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      5388288 2 -   6271500 TC
i macNem1.NW_012011056v1    I 28 C 0
e aotNan1.NW_018511953v1       649186 1848 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289 0 +    584178 C
e canFam3.chr9               55250958 2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1850178 515 -   1987038 I
e macFas5.chr7               65345595 1383 + 171882078 I
e rheMac8.chr7               60400562 508 + 169600520 I
e saiBol1.JH378108            5021229 1050 -  54856640 I

a score=78891.000000
s hg38.chr15_KI270850v1_alt    227075 46 +    430880 TGAACTTGCCGCTTTTGCATTCTTTGAGTTCAGTTTAAAGACAGTT
s panTro5.chr15              18036880 46 -  83230942 TGAACTTGCCGCTTTTGCATTCTTTGAGTTCAGTTTAAAGACACTT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       325655 46 +    378907 TGAACTTGCCGCTTTTGCATTCTTTGAGTTCAGTTTAAAGACACTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102179949 46 + 121039945 TGAACTTGCCACTTTTGCATTATTTGAGTTCACTTGAAAGACAGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60401070 46 + 169600520 TGAACTTGCCGCTTTTGCATTATTTGAGTTCACTTGAAAGACAGTT
i rheMac8.chr7              I 508 C 0
s macNem1.NW_012011056v1      5388290 46 -   6271500 TGAACTTGCCGCTTTTGCATTCCTTGAGTTCAGTTTAAAGGCAGTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1850693 46 -   1987038 TGAACTTGCCGCTTTTGCATTATTTGAGTTCACTTGAAAGACAGTT
i cerAty1.NW_012002657v1    I 515 C 0
e aotNan1.NW_018511953v1       649186 1848 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958  2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e macFas5.chr7               65345595 1383 + 171882078 I
e saiBol1.JH378108            5021229 1050 -  54856640 I

a score=151886.000000
s hg38.chr15_KI270850v1_alt    227121 67 +    430880 ACTTTAAGCCCATTTTAAACCCTCAGGCTAGAAATCGTACCACTGTTAATTAGCCACATTATTTGGT
s panTro5.chr15              18036926 67 -  83230942 ACTTTAACTCCATTTTAAACCCTCGGGCTAGAAATTGTACCACTGTTAATTAGCCACGTTATTTGGT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       325701 67 +    378907 ACTTTAACTCCATTTTAAACCCTCGGGCTAGAAATCGTACCACTGTTAATTAGCCACGTTATTTGGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102179995 67 + 121039945 ACTTTAAGTCCATTTTAAACCCTTGGGCTAGAAATTGTACCACTGTTAATTAGCCACATTATTTGGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60401116 67 + 169600520 ACTTTAAGTCCATTTAAAACCCTCGGGCTAGAAATCGTACCAGTGTTAATTAGCCACATTATTTGGT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5388336 67 -   6271500 ACTTTAAGTCCATTTTAAACTCTCGGGCTAGAAATCGTACCACTGTTAATTAGCCACATTATTTGGT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1850739 67 -   1987038 ACTTTAAGTCCATTTTAAACCCTCGGGCTAGAAATCGTACCACTGTTAATTAGCCACATTATTTGGT
i cerAty1.NW_012002657v1    C 0 C 0
s saiBol1.JH378108            5022279 67 -  54856640 ACTTTACGTCCATGTGGAAACATCGGGCTAGAAATCCTACCACTCTTAATCAGCCACATTACTTGGT
i saiBol1.JH378108          I 1050 C 0
e aotNan1.NW_018511953v1       649186 1848 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958  2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e macFas5.chr7               65345595 1383 + 171882078 I

a score=130454.000000
s hg38.chr15_KI270850v1_alt    227188 77 +    430880 CTAACA-------GTTTATCATTCTGAAACTGAGCTTACCTAATACATTGATAAATTATTTCAAAGGTATTTTTATAGTTCAAA
s panTro5.chr15              18036993 83 -  83230942 CTAACAGTTTTT-GTTTATCATTCTGAAACTGAGCTTATCTAATACATTGATAAATTATTTCAAAGGTATTTTTATAGTTCAAA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       325768 84 +    378907 CTAACAGTTTTTCTTTTATCATTGTGAAACTGAGCTTATCTAATACATTGATAAATTATTTCCAAGGTATTTTTATAGTTCAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102180062 83 + 121039945 CTAACAGTTTTT-CTTTATCATTCTGAAACTGGGTTTACCTAATACATTGATAAATTATTTCAAGGGTATTTTTATAGTTCAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60401183 83 + 169600520 CTAACAGTTTTT-CTTTATCATTCTGAAACTGGGTTTACCTAATACATTGATAAATTATTTTGAAGGAATTTTTATAGTTCCAG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      5388403 83 -   6271500 CTAACATTTTTT-CTTTACAATTCTGAAACTGGGTTTATCTAACACATTGATAAATTATTTCAAAGGTATTTTTGTAGTTCAAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1850806 83 -   1987038 CTAACAGTTTTT-CTTTATCATTCTGAAACTGGGTTTACCTAATACATTGATAAATTATTTTGAAGGAATTTTTATAGTTCCAG
i cerAty1.NW_012002657v1    C 0 C 0
e aotNan1.NW_018511953v1       649186 1848 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958  2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e macFas5.chr7               65345595 1383 + 171882078 I
e saiBol1.JH378108            5022346  0 -  54856640 C

a score=881995.000000
s hg38.chr15_KI270850v1_alt    227265 406 +    430880 TCGCTTCACTTTTACCCTGACACGTATAAATGACTAGGAATGACCTTCAGATAGCGTTTAGCAACTGTAACCAATCTGACAATAATGTGTTCATCAGGTACCTGTGGATTAAATCACATACTGGCATATTTAAGCTGAATGTCAGTCTGAAAAATAAATGTACTATATTAACTCAAATACCACTCTCTGTGTAGG-TATTTTGTCATATGTTTAAGAAAAAGCTAAAGAGAATGGAAATCctatgacaataactatgacaataactatgacaaGTCTTTCTTCAAAGTGCATGCAGTCTTTTGCAGTACCTCATTCAGCCAAGTATTTGTTCTCTACCTCATTCAGTATAAGGCAGCCTTTAATTTGCTTAGAAGGCAACATTAGAAGGTTAGAGTTCAGCAGGAAC
s panTro5.chr15              18037076 390 -  83230942 TCGCTTCACTTTTACCCTGACACGTATAAATGACTAGGAATGACCTTCAGATGGCGTTTAGCAACTGTAACCAATCTGACAATAATGTGTTCATCAGGTACCTGTGGATTAAATCACATACTGGCATATTTAAGATGAATGCCAGTCTGAAAAATAAATATACTATATTAATTCAAATATGACTCTTTGTGTAGG-TATTTTGTCATATGTTTAAGAAAAAGCTAAAGAGGATGGAAATCCTATGACAATAACT----------------CAAGTCTTTCTTCAAAGTGCATGCAGTCTTTTGCAGTACCTCATTCAGCCAAGTATTTGTTCTCTACCTCATTCAGTATAAGGCAGCCTTTAATTTGCTTAGACGGCAACATTAGAAGGTTAGAGTTCAGCAGGAAC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       325852 390 +    378907 TCGCTTCACTTTTACCCTGACACATATAAATGACTAGGAATGACCTTCAGATAGCGTTTAGCACCTGTAACCAATCTGACAATAATGTGTTCATCAGGCACCTGTGGATTAAATCACATACTGGCATATTTAAGCTGAATGTCAGTCTGAAAAATAAATGTACTATATTAACTCAAATACCACTCTCTGTGTAGG-TATTTTGTCATATGTTTAAGAAAAAGCTAAAGAGAATGGAAATCCTATGACAATAACT----------------CAAGTCTTTCTTCAAAGTGCGTGCAGTCTCTTGCAGTACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGGATAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAGAGTTCAGCAGAAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102180145 385 + 121039945 TCACTTCACTTTTACCCTGACACATATAAATGACTAGGAATGACCTTCAGATAGCCTTTAGCATCTGTAACCAATCTGACAATAATGTGTTCATCAGGTACCTATGGATTAAATCACATACGGGCATATTTAAGCTCAATGTCAGTCTGAA----AAATGTACCATATTAACTGAAATACCACTCTTTGTGTAGG-TATTTTGTCATATGTTTAA-AAAAAGCTAAAGAGAACGGAAATCGTGTGACAATAACT----------------TAAGTCTTTCTTCAAAGTGCATGCAGTCTTTTGCAATACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTAAAAGGCAGCTTTCAATTTGCTTCGAAGGCAACATTAGAAGGTTAGAGATCATCAGAAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60401266 385 + 169600520 TCACTTCACTTTTACCCTGACACATATAAATGACTA-----GACCTTCAGATCGCATTTAGCATCTGTAACCAATCTGACAATAATGTGTTCATCAGGGACCTATGGATTAAATCACATACTGGCATATTTAAGCTGAATATCAGCCTGGAAAATAAATGTACTATATTAACTGAAATACCACTCTTTGTGTAGG-TATTTTGTCATATGTTTAAGACAAAGCTAAAAAGAATGGAAATCATATCACAATAACT----------------TAAGTCTTTCTTCAAAGTGCATGCAGTCTTTTGCAATACCTCATTCAGCCAAGTATTTGTTCTCTTCTTCATTCAGTATAAGGCAGCTTTCAGTTTGCTTAGAAGGCAACATTAGAAGGTTAGAGTTCATCAGAAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65346978 389 + 171882078 TCACTTCACTTTTA-CCTGACACATATAAATGACTAGGAATGACCTTCAGATAGTGTTTAGCATCTGTAACCTATCTGGCAATAATGTGTTCATCAGGGACCTCTGGATTAAATCACATACTGGCATATTTAAGCTGAATGTCAGTCTGAAAAATAAATGTGCTATATTACCTGAAATACCACTCTTTGTGTAGG-AATTTTGTCATATGTTTAAGAAAAAGCTAAAAAGAATGGAAATCCTGTGACAATAACT----------------TAAGTCTTTCTTCAAAGTGCATGCAGTCGTTTGCAATACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTATAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAGAGTTCAGCAGAAAC
i macFas5.chr7              I 1383 C 0
s macNem1.NW_012011056v1      5388486 390 -   6271500 TCACTTCACTTTTACCCTGACACATATAAATGACTAGGAATGACCTTCAGATCGTGTTTAGCATCTGTAACCTATCTGATAATAATGTGTTCATCAGGTACCTATGGATTAAATCACATACTGGCATATTTAAGCTGAATGTCAGTCTG-GAAATAAATTTACCATATTAACTGAAATACCACTGTTTGTGTAGGTATTTTTGTCATATATTTAAGAAAAAGCTAACAAGGATGGAAATCATATTACAATAACT----------------TAAGTCTTTCTTCAAAGTGTGTGCAGTCTTTTGCAATACCTCATTCGGCCAAGTATTTGTTCTCTTTCTCATTCAGTATAAGGCAGCTTTCAATTTGCTTAGCAGGCAACATTAGAAGGTTAGAGTTCAGCAGAAAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1850889 389 -   1987038 TCACTTCACTTTTACCCTGACACATATAAATGACTAGGAATGACCTTCAGATCGCATTTAGCATCTGTAACCAATCTGACAATAATGTGTTCATCAGGGACCTATGGATTAAATCACATACTGGCATATTTAAGCTGAATATCAGCCTGGAAAATAAATGTACTATATTAACTGAAATACCACTCTTTGTGTAGG-TATTTTGTCATATGTTTAAGACAAAGCTAAAAAGAATGGAAATCATATCACAATAACT----------------TAAGTCTTTCTTCAAAGTGCATGCAGTCTTTTGCAATACCTCATTCAG-CAAGTATTTGTTCTCTTCTTCATTCAGTATAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAGAGTTCATCAGAAAT
i cerAty1.NW_012002657v1    C 0 C 0
e aotNan1.NW_018511953v1       649186 1848 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289   0 +    584178 C
e canFam3.chr9               55250958   2 +  61074082 I
e otoGar3.GL873533             432204  78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e saiBol1.JH378108            5022346   0 -  54856640 C

a score=187095.000000
s hg38.chr15_KI270850v1_alt    227671 75 +    430880 ATAGAATTTTAAAATGTGACTTC-AACTGAATAAATTTGAATTTCTGTAGGGAGTAAAGAATCAAAACA----CCTATTT
s panTro5.chr15              18037466 75 -  83230942 ACAGAATTTTAAAATGTGACTTC-AACTGAATAAATTTGAATTTCTGTAGGGAGTAAAGAATCAAAACA----CCTATTT
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       326242 74 +    378907 ATAGAA-TTTAAAATGTGACTTC-AACTGAATAAATTTGAATTTCTTTAGGGAGTAAAGAATCAAAACA----CCTATTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102180530 73 + 121039945 --AGAATTTTAAAATGTGAGTTT-AACTGAATAAATGTGAATTTCTGTAGGAAGTAAAGAATCAAAGCA----CCTATCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60401651 75 + 169600520 ACATAATTTTAAAATGTGAGTTC-AACTGAATAAATTTTAATTTCTGTAGGAAATAAAGAATCAAAATA----CCTGTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65347367 74 + 171882078 --AGAATTTTAAAATGTGAGTTCAAACTGAATAAATGTGAATTTCTGTAGGAAGTAAAGAATCAAAATA----TCAATTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5388876 79 -   6271500 ATAGAATTTTAAAATGTGAGTTC-AACCGAATAAATTTGAATTTTTGTAGGAGGTAAAGAATCAAAATACTTGTATATTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1851278 76 -   1987038 ACATAATTTTAAAATGTGAGTTCAAACTGAATAAATGTGAATTTCTGTAGGAAGTGAAGAATCAAAATA----TCAATTT
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       651034 70 -   3745603 ATAGAGTTTTAAAATGTGAGTTC-AACTGAATAAATTTGAATTTCTGTAGG-----AAGAATCAAAATA----CCTATTT
i aotNan1.NW_018511953v1    I 1848 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958  2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       337721 1637 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5022346  0 -  54856640 C

a score=660309.000000
s hg38.chr15_KI270850v1_alt    227746 225 +    430880 AAAGACTGCAAAATATGATAATTATTTTTAAAGTAATTGATTAAACCTGGTAGGTTTTCCCAAAATGAAAAACAATCAGTTCTAAAACCAAAGCTGATTTTTAGAAAATGTGAAAATGTAAATCAA-----CCCTATCCATAATAG--A--TTCTCTAAAACTTTATCTTAC--AGTCACTTT-CAA-----ATAACTATTCAAAAATGTAACTGCTATATTAACGTCTTAAAATAATTTAA
s panTro5.chr15              18037541 225 -  83230942 AAAGACTGCAAAATATGATAATTATTTTTAAAGTAATTGATTAAACCTGGTAGGTTTTCCCAAAATGAAAAACAGTCAGTTCTAAAACCAAAGGTGATTTTTAGAAAATGTGAAAATGTAAGTCAA-----CCCTATCCATAATAG--A--TTCTCTAAAACTTTATCTTAC--AGTCACTTT-CAA-----ATAACTATTCAAAAATGTAACTGCTATATTAACGTCTTAAAATAATTTAA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       326316 225 +    378907 AAAGACTGCAAAATATGATAATTATTTTTAAAGTAATTGATTAAACCTGGTAGGTTTTCCCAAAATGAAAAACAATCAGTTCTAAAACCAAAGCTGATTTTTAGAAAATGTGAAAATGTAAGTCAA-----CCCTATCCATAATAG--A--TTCTCTAAAACCTTATCTTAC--AGTCACTTT-CAA-----GTAACTATTCAAAAATGTAACTGCTATATTAATGTCTTAAAATAATTTAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102180603 229 + 121039945 AAAGACTGCAATATAGGATAATTATTTTTAAAGTATTTGATTAAACCTGATAGGTTTTCTCGAAATGAAAAA-AATCAGTTCTAAAACCAAAGGTAATTTTTTGAAAATGTGAAAATGTAAATCAG-----CCCTATCCATAATAT--AATTTCTCTAAAACTTTATCTT----AGTCATTTT-AAAATAATATAACCATTCAAAAATGTAACTGCTATCTTCATGTTTTGAAATAAGTTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60401726 231 + 169600520 AAAGATTGCAATATATGATAATTATTTTTAAAGTATCTGGCTAAACCTGATAGATTTTCTGGAAATGAATAA-AATCAGTTCTAAAACCAAAGCTGATTTTTAGAAAATGTGAAAATATAAATCAG-----CCCTATCCATAATAG--T--TTCTCCAAAACTTTATCTTACAGAGTTACTTTAAAA-TAATATAACTATTCAAAAATGTAACTGCTATGTTAATGTTTTGAAATAAGTTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65347441 221 + 171882078 AAAGACTGCAATATATCATAATTATTTTTAAACTATTTGATTAAACCTGATAGGTTTCCCTGAAATGAAAAA-AATCAGTTCTAAAACCAAAGCTGAGTTTTATACAACATGAAAATGTAAATCAG-----CCCTATCCATAATAC--T--TTCTCTAAAACTTTATCTTAC--AGTCACTTT-CAA-----ATAACTATTCAAAAACATAACTGCTA---TAATATCTTGAAATAAGTTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5388955 217 -   6271500 AAAGATTGCAGTATATGATAATCATTTTGAAG-TATTTGATTAAAACTAATAGGTTTTCCAGAAATTAAAAA-AAACAATTTTAAAACCAAAGCAGATTTCTAGAAAATATGAAAATGTAAATCAG-----CCCTATCCGGAATATAGT--TTCTGTAAAACTT----------AGTCATTTTACAA-TAGTATAACTATTAAAAAATGTAACTGCTATTTTAATGTTTTGAAA-----TAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1851354 229 -   1987038 AAAGACTGCAATATATGATAATTATTTTTAAAGTATCTGGCTAAACCTGATAGATTTTCTGGAAATGAATAA-AATCAGTTCTAAAACCAAAGCTGATTTTTAGAAAATGTGAAAATATAAATCAG-----CCCTATCCATAATAG--T--TTCTCCAAAACTTTATCTTAC--AGTTACTTTAAAA-TAATATAACTATTCAAAAATGTAACTGCTATGTTAATGTTTTGAAATAAGTTAA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       339358 223 -   1458659 AAAGACTGCAATATATGAAAATTATTTTTAAACTATTTGATTAAACCTGATAGGTTTTCCCAAAATGAAAAA-ACTCAGTTCTAAAACCGAAGCTGCTTTCTACAAAACATGAAAATGTAAATCA------CCCCATCCATAATAG--C--TTCTCTAAAACTTTATCTTAC--AGTCACTTT-CAA-----ATAACTATTCAAAAACATAACTGCTATAATAATATCTTGAAATAAGTTAA
i manLeu1.NW_012105520v1    I 1637 C 0
s aotNan1.NW_018511953v1       651104 235 -   3745603 AAAGAGTGCAATACATGATAATCATTTTCAAAGGATTTTATTAAACCTGATAGATTTTCCAGAAATGAATAAAAATCAGTTCTGAAACCAAAGCTGATTTTAAGAAAATTTGAAAATGTAAATCAGTTCTATCCTATCCATAATATAGC--TTCTCCAAAACTTTATCTTAAAGAGTCATTTT-CAA----GATAACTATTCAAACATGTAACTACTATCTTAATGTTTTGAAATTACTTAA
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289   0 +    584178 C
e canFam3.chr9               55250958   2 +  61074082 I
e otoGar3.GL873533             432204  78 -  31380117 I
e panPan2.chr15              76632369 142 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e saiBol1.JH378108            5022346   0 -  54856640 C

a score=1357546.000000
s hg38.chr15_KI270850v1_alt    227971 362 +    430880 AACATTTTAAAATATGAATACTGTAGTTTAAAACAAAGAATCTAGGGGAAGGAAAAGTAGACaaagaaatgccaattccagtccaaagctgtatttgccaagttttcttagaatgacttttaccgatttatgaattcttatacacagaatgcataatggaaatact----g----atttttgtctaaagtggcattattgactgctgctgtgatG--CTACTATAATGTAATACATTATTAAATTGTTTCAAGGTGCTG-TTTTGCCTAAAAA-----TTTTGTGTGTCTTGAAAACTATAGTACT--GGGTATTGAGACTCTGCAAATTCTCGGCATGCTTGGCATGAGGTAATCGGTTTTTATTCTTACAAAAT-----TGTA
s panTro5.chr15              18037766 362 -  83230942 AACATTTTAAAATATGAATACTGTAGTTTCAAACAAAGAATCTAGGGGAAGGAAAAGTAGACaaagaaatgccaattccagtccacagctgtatttgccaagttttcttagaatgacttttaccgatttatgaattcttatacacataatgcataatggaaatact----g----atttttgtctaaagtggcATTATTGACTGCTTCTGTGATG--CTACTATAATGTAATACATTATTAAATTGTTTCAAGGTGCTG-TTTTGCCTAAAAT-----TTTTGTGTGTCTTGAAAACTATAGTATT--GGGTATTGAGACTCTGCAAATTCTCGGCATGCTTGGCATGAGGTAATCGGTTTTTATTCTTACAAAAT-----TGTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76632511 373 +  99763055 AACATTTTAAAATATGAATACAGTAGTTTAAAACAAAGAAACTGGAGGAAGGAAAAGTAGAGAAAGAGATGCCAATTCCAGTCCaaaccttt-tttgccaagttttcttagaatgacttttaccaattgatgaattcctgtaaacagaatgtataatggaaataca----gaaacactgttgcctaaagtggGATTATTCACTGCTACTGTGATG--CTACTGTAATGTAATAAATTATTAAATTGTTGCAAAGTGCTGTTTTTGCCTTAAAA-----TTTTATATGTCTTGAAAACTATAGTATTAAGAGTATTGAGACTGTGAAAATGCTGGGGACACTTGGCATGAGATAATCAGTTTTTATTTTTATGAAATTGTAATGTA
i panPan2.chr15             I 142 C 0
s gorGor5.CYUI01015946v1       326541 362 +    378907 AACATTTTAAAATATGAATACTGTAGTTTAAAACAAAGAATCTAGGGGAAGGAAAAGTAGACaaagaaatgccaattccagtccaaagctgtatttgccaagttttcttagaatgacttttaccgatttatgaattcttatacacagaatgcatgatggaaatact----g----atttttgtctaaagtggcattattgactgcttctgtgatG--CTACTGTAATGTAATACATTATTAAATTGTTTCAAGGTGCTG-TTTTGCCTAAAAA-----TTTTGTGTGTCTTGAAAACTATAGTATT--GGGTATTGAGACTCTGCAAATTCTGGGCATGCTTGGCATGAGGTAATCGGTTTTTATTCTTACAAAAT-----TGTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102180832 356 + 121039945 AACATTTT-AAATATGAATACTGTAGTTTAAAAGAAAGAAACCAGGGGAAGGAAAAGTAGAGAAAGAAATGCCAATTCCAGTCCAAAGCTTTATTTGCCAAGTTTTCTTAGAATGACTTTTACCTATTTATGAATTCTTACAAACAGAATGTATAATGGAAATACT----G----ACTTTTGCCTAAAGTGGCATTGTTGACTG---CTGTGATG--TTACTGTAATGTAATAAATTATTAAATTGTTGCAAAGTGCTGTTTTTGCCTTAAAA-----TTTTGTGTGTCGTGAAAACTATAGTATT--AAATACT-ATAGCGTGCAAATAATGGGCACGCTTGGCATGAGAGAATC--TTTTTATTTTTACAAAAT-----TGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60401957 357 + 169600520 AACATTTTAAAATATGAATACTGTAGTTTAAAACAAAGAAACTGGGGGAAGGAAAAGTAGAGAAATAA-----------AGTccaaagctttatttgccaagttttcttagaatgacttttaccaatttatgaattcttattaacagaatgtataatggaaatactgaaag----acttttgtctaaagtggcattattg---actgctatcatgataTACTGTAATGTAATAAATTATGAAATTGTTGCAAAGTGTTGTTTTTGCCTTAAAA-----TTTTGTGTGTCTTGAAAACTATAGCATTAAAGGTATTGAGACTGTGCAAATGCTGAGCACACTTGGCATGAGATCATCGGTTTTTATTTTTACAAAAT-----TGTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65347662 362 + 171882078 AACATTTTAAAATATGAACACTGTAGTGTAAAACCAAGAATCTAGGGGAAGGAAAAGTAGAGACagaaatgccaattccagtccaaagctttatttgccaagttttcttagaatgacttttaccaacttacgatttcttgtaaacagaatgtataatggaaatact----g----acttttgtctaaagtggcATTATTG---ACTTCTGTGATG--CTACTATAATGTAATAAATTATGAAATTGTTGCAAGGTGCTGTTTTTGCCTTAAAT-----TTTTGTGTGTCTTGAAAACTATAGTATTAAAGGTATTGAGACTGTGCAAATGTTGGGCACGCTTGTCATGAGATAATCGGTTTTTATTCTCACAAAAT-----TGTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5389172 364 -   6271500 AACATTTTAAAATATGAATACTGTAGCTTAAAAGAAAGAAATT-GGAGAAGGAAAAGTAGAGaaagaaatgccaattccagtccaaaactttatttgccaggttttcttatgatgacttttaccaatttatgaattattgtaaacagaatctat-atggaaatactgaaag----acttttgcctaaagtggc-TTATTGAATACTGCTATGATG--CTACTGTAATGTCATAAATT-----ATTGTTACAAAGTGCTGTTTTTGCCTTAAGTTTTTATTTTGTGTGTCTTGAAAACTATAGTATTAAAGGTATTAAGATTGTGCAAATGCTGGGCACACTTGGCATTAAATAAT--GTTTTTATTTTTACAAAAT-----TGTA
i macNem1.NW_012011056v1    C 0 I 290
s cerAty1.NW_012002657v1      1851583 357 -   1987038 AGTATTTTAAAATATGAATACTGTAATTTAAAACAAAGAAACTGGGGGAAGGAAAAGTAGAGAAATAA-----------AGTccaaagctttatttgccaagttttcttagaatgacttttaccaatttatgaattcttattaacagaatgtataatggaaatactgaaag----acttttgtctaaagtggcattattg---actgctatcatgataTACTGTAATGTAATAAATTATGAAATTGTTGCAAAGTGTTGTTTTTGCCTTAAAA-----TTTTGTGTGTCTTGAAAACTATAGCATTAAAGGTATTGAGACTGTGCAAATGCTGAGCACACTTGGCATGAGATCATCGGTTTTTATTTTTACAAAAT-----TGTA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       339581 364 -   1458659 AACATTTTAAAATATGAACACCATAGTTTAAAAGAAAGAATCTAGGGGAAGGAAAAGTAGAGaaagaaatgccagttccagtccaaagctttatttgccaagttttcttagactcacttttaccaacttatgatttcttgtaaacagaatgtataatagaaatact----g----acTTTTGCCTAACGTGGCATTCTTGACTGCTTCTGTGATG--CTACTATAATGTAATAAATTATGAAATTCTTGCAAGGTGCTGTTTTTGCCTTAAAA-----TTTTGTGTGTCTTGAAAATTCTAGTATTAAAGGTATTGAGACTGTGCAAATGCCGGGAACA-TTGGCATGAGATAATCAGTTTTTATTCTCACAAAAT-----TGTA
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       651339 363 -   3745603 AACATTTTAAAATATGAATGTCATAGTTTAA----AAGAAACCGGGAGAAGGAAAAGTAGAGaaagaaatgccaattccagtccaaagctttatttgccaagtttcctaagaatgacttttaccaatgtatgaacacttgtgaacagaacgtaagatggaaatcctga--g----ccttttgtctaaagcggcattattgactgctgctgtgatG--CTCCCGTAATGTAATAAATTATTCAATTGCTGCAAAGTGCTGTTTTTGCCTTAAAA-----TTTTGTGTGTCTTAACAACTATAGTATTAAAGGTATTGAGACTCTGCAAATGCTGGGCACACTTGGCATGAGATACTCTGTTTTTGTTTTTACAAAAT-----TGTA
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289   0 +    584178 C
e canFam3.chr9               55250958   2 +  61074082 I
e otoGar3.GL873533             432204  78 -  31380117 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e saiBol1.JH378108            5022346   0 -  54856640 C

a score=32105.000000
s hg38.chr15_KI270850v1_alt    228333 11 +    430880 -----ACTATGTAAGT
s panTro5.chr15              18038128 11 -  83230942 -----ACTATGTAAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76632884 11 +  99763055 -----ACTATGCAAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       326903 11 +    378907 -----ACTATGTAAGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102181188  9 + 121039945 -----ACTATATAA--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60402314 11 + 169600520 -----TCTATGCAAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65348024 11 + 171882078 -----ACTATGTAAGT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1851940 11 -   1987038 -----ACTATGCAAGT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       339945 11 -   1458659 -----ACTATGTAAGT
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       651702 16 -   3745603 ATATAGCTATGCAAGT
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958  2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I
e macNem1.NW_012011056v1      5389536 290 -   6271500 I
e saiBol1.JH378108            5022346  0 -  54856640 C

a score=67289.000000
s hg38.chr15_KI270850v1_alt    228344 16 +    430880 GTGTTTATTAAAAGAA
s panTro5.chr15              18038139 16 -  83230942 GTGTTTATTAAAAGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76632895 15 +  99763055 GTGTTTATTAAAGGA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       326914 16 +    378907 GTGTTTATTAAAAGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102181197 15 + 121039945 GTGTTTATTAAAAGA-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60402325 16 + 169600520 GTATTTATTAAAAGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65348035 16 + 171882078 GTGTTTATTAAAAGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5389826 16 -   6271500 GTGTTTATCAAAAGAA
i macNem1.NW_012011056v1    I 290 C 0
s cerAty1.NW_012002657v1      1851951 16 -   1987038 GTATTTATTAAAAGAA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       339956 16 -   1458659 GTGTTTATTAAAAGAA
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       651718 16 -   3745603 GTGTTTATTAAAAGAA
i aotNan1.NW_018511953v1    C 0 I 9
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958  2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5022346  0 -  54856640 C

a score=35935.000000
s hg38.chr15_KI270850v1_alt    228360 14 +    430880 CACAAACTAAAA--AA
s panTro5.chr15              18038155 14 -  83230942 CACAAACTAAAA--AA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76632910 15 +  99763055 -ACAAACTAAAAAGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       326930 14 +    378907 CACAAACTAAAA--AA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60402341 14 + 169600520 CACAAACTGAAA--AG
i rheMac8.chr7              C 0 I 2
s macFas5.chr7               65348051 14 + 171882078 CATAAACTAAAA--AA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5389842 14 -   6271500 CACAAACTGAAA--AA
i macNem1.NW_012011056v1    C 0 I 913
s cerAty1.NW_012002657v1      1851967 14 -   1987038 CACAAACTGAAA--AG
i cerAty1.NW_012002657v1    C 0 I 2
s manLeu1.NW_012105520v1       339972 14 -   1458659 CATAAACTAAAA--AG
i manLeu1.NW_012105520v1    C 0 C 0
e aotNan1.NW_018511953v1       651734  9 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958  2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I
e nomLeu3.chr6              102181212  0 + 121039945 C
e saiBol1.JH378108            5022346  0 -  54856640 C

a score=-2883.000000
s hg38.chr15_KI270850v1_alt    228374 4 +    430880 GTTA-
s panTro5.chr15              18038169 3 -  83230942 GTT--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76632925 3 +  99763055 GTT--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       326944 3 +    378907 GTG--
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60402357 4 + 169600520 GTT-A
i rheMac8.chr7              I 2 I 24
s macFas5.chr7               65348065 4 + 171882078 GTT-A
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1851983 4 -   1987038 GTT-A
i cerAty1.NW_012002657v1    I 2 I 24
s manLeu1.NW_012105520v1       339986 4 -   1458659 GTT-A
i manLeu1.NW_012105520v1    C 0 C 0
e aotNan1.NW_018511953v1       651734 9 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289 0 +    584178 C
e canFam3.chr9               55250958 2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e chlSab2.chr29              21075958 0 -  24206276 I
e macNem1.NW_012011056v1      5389856 913 -   6271500 I
e nomLeu3.chr6              102181212 0 + 121039945 C
e saiBol1.JH378108            5022346 0 -  54856640 C

a score=4489.000000
s hg38.chr15_KI270850v1_alt    228378 11 +    430880 ACAGGAATT----AA
s panTro5.chr15              18038172 11 -  83230942 ACAGAAATT----AA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76632928 15 +  99763055 ACGGGAATTTTTAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       326947 15 +    378907 ACAGGAATTAAAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102181212  6 + 121039945 ACAA---------AC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65348069 11 + 171882078 -CAGGAATTA---AA
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       339990 11 -   1458659 -CAGGAATTA---AA
i manLeu1.NW_012105520v1    C 0 C 0
e aotNan1.NW_018511953v1       651734  9 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958  2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1851987 24 -   1987038 I
e macNem1.NW_012011056v1      5389856 913 -   6271500 I
e rheMac8.chr7               60402361 24 + 169600520 I
e saiBol1.JH378108            5022346  0 -  54856640 C

a score=27819.000000
s hg38.chr15_KI270850v1_alt    228389 12 +    430880 AGTTGTGGGATG
s panTro5.chr15              18038183 12 -  83230942 AGTTGTGGGATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76632943 12 +  99763055 AGTTGTGGGATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       326962 12 +    378907 AGTTGTGGGATG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102181218 12 + 121039945 AGTTATGGGATG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65348080 12 + 171882078 AGTTGTGGGATG
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       340001 12 -   1458659 AGTCGTGGAATG
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       651743 12 -   3745603 AGTTATGGGATA
i aotNan1.NW_018511953v1    I 9 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958  2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1851987 24 -   1987038 I
e macNem1.NW_012011056v1      5389856 913 -   6271500 I
e rheMac8.chr7               60402361 24 + 169600520 I
e saiBol1.JH378108            5022346  0 -  54856640 C

a score=168490.000000
s hg38.chr15_KI270850v1_alt    228401 86 +    430880 AAAAAGTTACAGGATAAAAAAATACTGTGGAAAAGTGGCA--AAAAAA-AGTTGTGGAAAAAAAGT-AAAAAAAAACTTTTATGAAAAGT
s panTro5.chr15              18038195 87 -  83230942 AAAAAGTTACAGGATAAAAATATACCATGGAAAAGTGGCA--AAAAAA-AGTTGTGGAAAAAAAGTAAAAAAAAAAGTTTTATGAAAAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76632955 85 +  99763055 AAAAAGTTATGGGATAAAAA-ATGCTGTGGAAAAGTTGTGGCAAAAGA-AGTTGT-GAAAAAAAGT--AGAAAAATGTTTTATGAAAAGT
i panPan2.chr15             C 0 I 42
s gorGor5.CYUI01015946v1       326974 86 +    378907 AAAAAGTTACGGGATAAAAA-ATACTGTGGACAAGTTGTGGCAAAAAA-CATTGTGGAAAAAAAGT--AAAAAAAAGTTTTATGAAAAGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102181230 68 + 121039945 AAAGAGTTATGGGATAAAAA-AT---GTGGAAAAGTG---------------TGT-CAAAAAAAGT--AGAAAAAAGTTGTATGAAAAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60402385 73 + 169600520 AAAAAGTTATGAGATAAAAA-ATGCTGTGGAGAAGTTGTGGCAA-------------AAAAAAAGT--AGAAAAAAGTTGTATG-AAATT
i rheMac8.chr7              I 24 C 0
s macFas5.chr7               65348092 83 + 171882078 GAAAAGTTATGGGATAAAAA-ATATGGTGGAAAAATTGTGGCAAAAA------GTCCAAAAAAAGTAAAAAAAAAAGTTGCCTGAAAAGT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1852011 73 -   1987038 AAAAAGTTATGAGATAAAAA-ATGCTGTGGAGAAGTTGTGGCA--------------AAAAAAAGT--AGAAAAAAGTTGTATGAAAAAT
i cerAty1.NW_012002657v1    I 24 C 0
s manLeu1.NW_012105520v1       340013 85 -   1458659 AAAAAGTTATGGGATAAAAA-ATGCGGTGGAAAAGTTGTGGCAAAAAA--GTTGTGAAAAAAAGTT--AAAAAAAAGTTTTATGCAAAGT
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       651755 82 -   3745603 AAAAAGTCCTCAGATAAAAA-AT---GTGGAAAAGTTGTGGCAAAAAAAAATTGTGGATAAAAAGT--AGAAAAA--TTTTATGAAAAGT
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958  2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I
e macNem1.NW_012011056v1      5389856 913 -   6271500 I
e saiBol1.JH378108            5022346  0 -  54856640 C

a score=-5690.000000
s hg38.chr15_KI270850v1_alt    228487 2 +    430880 -TA
s panTro5.chr15              18038282 2 -  83230942 -TA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       327060 2 +    378907 -AT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102181298 1 + 121039945 --T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60402458 2 + 169600520 -TT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65348175 2 + 171882078 -TT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1852084 2 -   1987038 -TT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       340098 2 -   1458659 -TT
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       651837 2 -   3745603 GT-
i aotNan1.NW_018511953v1    C 0 I 42
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289 0 +    584178 C
e canFam3.chr9               55250958 2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76633040 42 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e chlSab2.chr29              21075958 0 -  24206276 I
e macNem1.NW_012011056v1      5389856 913 -   6271500 I
e saiBol1.JH378108            5022346 0 -  54856640 C

a score=62312.000000
s hg38.chr15_KI270850v1_alt    228489 40 +    430880 TTTTAAAAAGTTATGAAAAATTAGTTACAGGATTTAAAAA-
s panTro5.chr15              18038284 40 -  83230942 TTTTAAAAAGTTATGAAAAAGAAGTTACAGGATTTAAAAA-
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       327062 40 +    378907 TTTTAAAACATTCTGAAAAAGAAGTTACGGGACTTAAAAA-
i gorGor5.CYUI01015946v1    C 0 I 1
s nomLeu3.chr6              102181299 40 + 121039945 ATTTAAAAAGTTATGAAAAAGAAGTTATGGGATTAAAAAA-
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr7               60402460 41 + 169600520 TTTTTAAAAGTTATGAAAAACAAGTTATGGAATTTCAAAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65348177 34 + 171882078 TTTTAAAAAGTTATGAGGAAGAAGTTATGG-------GAAA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1852086 41 -   1987038 TTTTTAAAAGTTATGAAAAACAAGTTATGGAATTTCAAAAA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       340100 41 -   1458659 TTTTTAAAAGTTATGAAAAAGAAGTTACTGGATTTAAAAAA
i manLeu1.NW_012105520v1    C 0 C 0
e aotNan1.NW_018511953v1       651839 42 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958  2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e panPan2.chr15              76633040 42 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I
e macNem1.NW_012011056v1      5389856 913 -   6271500 I
e saiBol1.JH378108            5022346  0 -  54856640 C

a score=2994.000000
s hg38.chr15_KI270850v1_alt    228529 3 +    430880 AAG
s panTro5.chr15              18038324 3 -  83230942 AAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76633082 3 +  99763055 AAG
i panPan2.chr15             I 42 C 0
s gorGor5.CYUI01015946v1       327103 3 +    378907 ACA
i gorGor5.CYUI01015946v1    I 1 C 0
s nomLeu3.chr6              102181340 3 + 121039945 ATG
i nomLeu3.chr6              I 1 C 0
s rheMac8.chr7               60402501 3 + 169600520 ACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65348211 3 + 171882078 AAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1852127 3 -   1987038 ACA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       340141 3 -   1458659 AAA
i manLeu1.NW_012105520v1    C 0 C 0
e aotNan1.NW_018511953v1       651839 42 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289 0 +    584178 C
e canFam3.chr9               55250958 2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e chlSab2.chr29              21075958 0 -  24206276 I
e macNem1.NW_012011056v1      5389856 913 -   6271500 I
e saiBol1.JH378108            5022346 0 -  54856640 C

a score=58423.000000
s hg38.chr15_KI270850v1_alt    228532 24 +    430880 TCAT-GGGATAAAAATAAAAATAAA
s panTro5.chr15              18038327 24 -  83230942 TCAT-GGGATAAAAATAAAAATAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76633085 14 +  99763055 TCAT-GGGATAA----------AAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       327106 24 +    378907 TCAT-GGGATAAAAATAAAAATAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102181343 24 + 121039945 TCAC-GGGATATAAATAAAAATAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60402504 24 + 169600520 TCAT-GGGATAAAAATAAAAATAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65348214 20 + 171882078 TCAT-GGGATAAAAATAAATA----
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1852130 24 -   1987038 TCAT-GGGATAAAAATAAAAATAAA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       340144 20 -   1458659 TCAT-GGAATAAAAATAAATA----
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       651881 25 -   3745603 TCATAGGGATAAATATAAAAATAAA
i aotNan1.NW_018511953v1    I 42 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958  2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I
e macNem1.NW_012011056v1      5389856 913 -   6271500 I
e saiBol1.JH378108            5022346  0 -  54856640 C

a score=6552.000000
s hg38.chr15_KI270850v1_alt    228556 2 +    430880 TA
s panTro5.chr15              18038351 2 -  83230942 TA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76633099 2 +  99763055 TA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       327130 2 +    378907 TA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102181367 2 + 121039945 TA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60402528 2 + 169600520 TA
i rheMac8.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1852154 2 -   1987038 TA
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       651906 2 -   3745603 TA
i aotNan1.NW_018511953v1    C 0 C 0
s dasNov3.JH564958             183289 2 +    584178 TA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55250958 2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       340164 0 -   1458659 C
e chlSab2.chr29              21075958 0 -  24206276 I
e macNem1.NW_012011056v1      5389856 913 -   6271500 I
e macFas5.chr7               65348234 0 + 171882078 C
e saiBol1.JH378108            5022346 0 -  54856640 C

a score=32714.000000
s hg38.chr15_KI270850v1_alt    228558 6 +    430880 AAAGCA
s panTro5.chr15              18038353 6 -  83230942 AAAGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76633101 6 +  99763055 AAAGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       327132 6 +    378907 AAAGCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102181369 6 + 121039945 AAAGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60402530 6 + 169600520 AAAGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65348234 6 + 171882078 AAAGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5390769 6 -   6271500 AAAGCA
i macNem1.NW_012011056v1    I 913 C 0
s cerAty1.NW_012002657v1      1852156 6 -   1987038 AAAGCA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       340164 6 -   1458659 AAAGCA
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       651908 6 -   3745603 ACAGCA
i aotNan1.NW_018511953v1    C 0 C 0
s dasNov3.JH564958             183291 6 +    584178 AAAGCC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e canFam3.chr9               55250958 2 +  61074082 I
e otoGar3.GL873533             432204 78 -  31380117 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e chlSab2.chr29              21075958 0 -  24206276 I
e saiBol1.JH378108            5022346 0 -  54856640 C

a score=24335.000000
s hg38.chr15_KI270850v1_alt    228564 6 +    430880 -GGCCCC
s panTro5.chr15              18038359 6 -  83230942 -GGCCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76633107 6 +  99763055 -GGCCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       327138 6 +    378907 -GGCCCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102181375 6 + 121039945 -GGCCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60402536 6 + 169600520 -GGCCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65348240 6 + 171882078 -GGCCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5390775 6 -   6271500 -GGACCC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1852162 6 -   1987038 -GGCCCC
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       340170 6 -   1458659 -GGCCCC
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       651914 6 -   3745603 -TGCTCC
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9               55250960 6 +  61074082 -GACACC
i canFam3.chr9              I 2 C 0
s dasNov3.JH564958             183297 6 +    584178 TGATGC-
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e otoGar3.GL873533             432204 78 -  31380117 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e chlSab2.chr29              21075958 0 -  24206276 I
e saiBol1.JH378108            5022346 0 -  54856640 C

a score=540516.000000
s hg38.chr15_KI270850v1_alt    228570 109 +    430880 TGTCAGCATAAGCCTGGAGAAGTGGGTCTGGAGTCTTCACCCCCACCATGTCCCTACAACC--------CCTCCCCAGTCA-----CCCCTTTACCATTAGGGTAGCAAGACAAGACCCTTG
s panTro5.chr15              18038365  96 -  83230942 TGTCAGCATAAGCCTGGAGAAGTGGGTCTGGAGTCTTCACCCCCACCATGTCCCTACAA---------------------A-----GCCCTTTACCATTAGGGTAGCAAGACAAGACCCTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76633113 109 +  99763055 TGTCAGCATAAGCCTGGAGAAGCGGGGCTGGAGTCTCCGTCGCTACCATATACCAACCACC--------CCTTCCCAGTCA-----CCCCTTTACCATTAGGGTAGCAAGACAAGACCCCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       327144 109 +    378907 TGTCAGCATAAGCCGGGAGAAGTGGGTCTGGAGTCTTCACCCCCACCATGTCCCTACAACC--------CCTTCCCAGTCA-----CCCCTTTACCATTAGGGTAGCAAGACAAGACCCCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102181381 114 + 121039945 TGTCTGCATAAGCCTGGAGAAGTGGGTCTGGGGTCTCCGCCCCCACCATGTCCCTACAACC--------CCTTCCCAGTCACCATTCCCCTTTACCATTAGGGTAGCAAGACAAGACCCCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60402542 109 + 169600520 TATCAGCATAAGCCTGGAGAAGTGGGTCTGGAGTCTTCACCCCCACCATGTACCAACCAGC--------CCTTCCCAGTAA-----CCCCTTTAACATTAGGGTAGCAAGACAAGACCCCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65348246 108 + 171882078 TGTCAGCATGAGCCTGGAGAAGTGAGTCTGGAGTCTTCACCCCCACCATGTCCCTACAACG--------CCTTCCCAGTCA-----CCTTTTTACCATTAG-GTAGCAACACAAGACCCCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5390781 108 -   6271500 TGTCAGCA-AAGCTTGGAGAAGTGGGGCCGGAGGCTCCATCCCCACCATGTCCCTATCACC--------CCTTCCCAGTCA-----CTCCTTTACCATTTGAGTAGCAAGACAAGACCCCTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1852168 109 -   1987038 TATCAGCATAAGCCTGGAGAAGTGGGTCTGGAGTCTTCACCCCCACCATGTACCAACCAAC--------CCTTCCCAGTTA-----CCCCTTTAACATTAGGGTAGCAAGACAAGACACCTG
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       340176 108 -   1458659 TGTCAGCATAAGCCTGGGGAAGTGGGTCTGCAGTCTTCGCCCACACTATGTCCCTACAACC--------CCTTCCCAGTCA-----CCCCTTTACCATTAG-GTAGCAACACAAGACCCCTG
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       651920 103 -   3745603 TGTCAGCA-AGGCCTGGAGAAGGGGGGCTGGAGTCTCCGCCCCCACCGTGTCCCT-----C--------CCCTCCCAGTCA-----CGCCTTTATTATTAGCCTAGCAAGACAAGACCCCTG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             432282  95 -  31380117 TGTCAACA-AGGTGTGGAGAAGTGGCGCTG---------CCCCTACGCCATCTCTGCCAC------------TCCCAGTCA-----CCCCTTTCTCCATAGATTAGCAAGATAAGACCCCTG
i otoGar3.GL873533          I 78 C 0
s canFam3.chr9               55250966 116 +  61074082 AGCAAGCA-AAACCTGGAGAAGTGGGGCCGGGGGCTCTGCTCCCACCCTGTCCCTGCCACCCTATCATTCCTTCCCAGTTA-----CCCTTTTATCCCTAAACTAGCAAGATAAGACCCCTG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             183303 106 +    584178 TGGCAGGCAAAGCCCAGAGACACGGGACCGGGGGCTCTGCCCCCACTTCTTCCTCTC--CT--------CCTTCCCTGCCA------CCCTTTATCCCTAGAATAGCAACATGGGGCCCCTG
i dasNov3.JH564958          C 0 I 1800
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e saiBol1.JH378108            5022346   0 -  54856640 C

a score=270300.000000
s hg38.chr15_KI270850v1_alt    228679 52 +    430880 -------------------TCTAATGGAGGGAGACAA------ACAGACCCTTTACCACCTTGACCAAGGCTGAGTC
s panTro5.chr15              18038461 52 -  83230942 -------------------TCTAATGGAGGGAGACAA------ACAGACCCTTTACCACCTTGACCAAGGCTGAGTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76633222 52 +  99763055 -------------------TCTAATGGGGGGAGAAAA------ACAGACCCTTTGGCACCTTGACCAGGGCTGAGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       327253 52 +    378907 -------------------TCTAATGGAGGGAGACAA------AGAGACCCTTTACCACCTTGACCAAGGCTGAGTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102181495 48 + 121039945 -------------------TCTAATGGGGGGAGAC----------AGACCCTTTGCCACGTTGACCAGGGCTGAGTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60402651 52 + 169600520 -------------------TCTAATGGAGGGAGACAA------ACAGACCCTTTCCCACGCTGACCAGGGCTGAGTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65348354 52 + 171882078 -------------------TCTAATGAAGAGAGAAAA------ACAGACCCTTTACCACCTTGACCAAGGCTGAGTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5390889 52 -   6271500 -------------------TCTAATGGGGAGAAACAA------ACAGACCCTTTGCCACCTTGGCCAGGGCTGAGTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1852277 52 -   1987038 -------------------TCTAATGGAGGGAGGCAA------ACAGACCCTTTCCCATGCTGACCAGGGCTGAGTC
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       340284 52 -   1458659 -------------------TCTAATGGAGGGAGAAAA------ACAGACCCTTTACCACCTTGACCAAGGCTGAGTC
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       652023 52 -   3745603 -------------------TCTAATGGGGGGAGACAA------ACAGACCCTTTGCCACCTTGACCAGGGCTGAGTC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             432377 58 -  31380117 -------------------TTTGATGTGGGAAGATAAGCCAATGCAGACCTTTTGCCATCTAGACCAGGACTAAATC
i otoGar3.GL873533          C 0 I 3691
s canFam3.chr9               55251082 77 +  61074082 AGAGGGGTGTGAAAAGCCTCCTAATTGGGGGAGACAAATAGGTGCAGACCTCTTGCCACCTTGGCAAGGGCTGTGTC
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183409 1800 +    584178 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5022346  0 -  54856640 C

a score=121783.000000
s hg38.chr15_KI270850v1_alt    228731 33 +    430880 CTTACATTTCTGGATGATGATGTTTGTTATTTA----------
s panTro5.chr15              18038513 33 -  83230942 CTTACATTTCTGGATGATGATGTTTGTTATTTA----------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76633274 33 +  99763055 CTTAAATTTCTGGATGATGATGATTGTTATTTA----------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       327305 29 +    378907 CTTACATTTCTGGATGATGA----TGTTATTTA----------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102181543 33 + 121039945 CTTAAATTTCTGGACGATGACGCCTATTATTTA----------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60402703 33 + 169600520 CTTACATTTCTGGATGGTGATGTTTGTTATTTA----------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65348406 33 + 171882078 CTTACATTTCTGGATGATGATGTTTGTTATTTA----------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5390941 32 -   6271500 CTTAAATTTCTGG-TGATGATGATTGTGATTTA----------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1852329 33 -   1987038 CTTACATTTCTGGATGGTGATGTTTGTTATTTA----------
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       340336 33 -   1458659 CTCACATTTCTGGATGATGATGTTTGTTATTTA----------
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       652075 33 -   3745603 CTCAAATTTCTGGATGATGATGGTTGTTATTTA----------
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr9               55251159 34 +  61074082 TTTA----TCTGGAC-----TACTCATCGTTCCAGAAAAACAA
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183409 1800 +    584178 I
e otoGar3.GL873533             432435 3691 -  31380117 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5022346  0 -  54856640 C

a score=881884.000000
s hg38.chr15_KI270850v1_alt    228764 220 +    430880 AGAGCCAGAGGTT---GGTGGAGTTGGTTTGTTT-------GGAGG-------------------AGG-----TCT-----------GATGGCCTTCTTA-------CTCTCACCAAAGCAACTTTTCCCTCA---------G-GGGGGCTCC--CATCTTCTTACTCAGAG-------------------------------------------AGGCAG------CTGAGGC---GGGACAG-TGGAGTTAACTGTAGACCAGGCCAG--GGCACAGGCTGCT-GGGGGTGGCCC-CC-CTTCCCCCG----------TGTACATACTGTAGCTGTGTAACATT-----------------------------CTGTA------------------------T
s panTro5.chr15              18038546 229 -  83230942 AGAGCCAGAGGTT---GGTGGAGTTGGTTTGTTT-------GGAGG-------------------AGG-----TCT-----------GACGGCCTTCTTA-------CTCTCACCAAAGCAACTTTTCCCTCACGGGGGGGGG-GGGGGCTCC--CATATTCTTAATCAGAG-------------------------------------------AGGCAG------CTGAGGC---GGGACAG-TGGAGTTAACTGTAGACCAGGCCAG--GGCACAGGCTGCT-GGGGGTGGCCC-CT-CTTCCCCCG----------TGTACATACTGTAGCTGCGTAACATT-----------------------------CTGTA------------------------T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76633307 244 +  99763055 AGAGCCAGAGGCT---GGTAGAGCTGGTTTGTTT-------GGAGG-------------------AGG-----CCT-----------GATGGCCTCCCTA-------CTCTCACCAAAGCAACTTTTCCCTCA-----------GGGGGCTCC--CA---TCTTATTCAGAG-------------------------------------------AGGCAG------CTGGGGC---AGGACAG-TGGGGCTAACCGTAGAGCAGGCAAG--GGCATGGGCTGCT--GGGGTGGCCC-CC-CTTCCCCAG----------TGTACATATAGTATCTGTGTAACATTTTGTATATTCCGGGGGGTAAGGCCACCCCTTGTA------------------------T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       327334 219 +    378907 AGAGCCAGAGGTT---GGTGGAGTTGGTTTGTTT-------GGAGG-------------------AGG-----TCT-----------GACGGCCTCCTTA-------CTCTCACCAAAGCAACTTTTCCCTCA---------G-CGGGGCTCC--CATCTTCTTACTCAGAG-------------------------------------------AGGCAG------CTGAGGC---GGGACAG-TGGAGTTAACTGTAGACCAGGCCAG--GGCACAGGCTGCT--GGGGTGGCCC-CC-CTTCCCCCT----------TGTACATACTGTATCTGTGTAACGTT-----------------------------CTGTA------------------------T
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102181576 245 + 121039945 AGAGCCAGAGGTT---GGTGGAGTTGGTTTGTTT-------GGAGG-------------------AGG-----TCT-----------GATGGCCTCCTTA-------CTCTCACCAAAGCAACTTTTCCCTCA---------G-GGAGGCTCC--CATCTTCTTATTCAGAA-------------------------------------------AGGCAG------CTGAGGC---GGGACAG-TGGGGCTGAC---AGACCAGGTGAG--GGCACGGGCTGCT--GGGGTGACCC-CCGCTTCCCCAG----------TGTATATATTGTATCTGCGTAACATTTTGTGTATTCTGGGGGGTGGGGCCGCCC-CTCTA------------------------T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60402736 217 + 169600520 GGAGCCAGAGGCT---GGTGGAGCTGGTTTGTTT-------GGAGG-------------------TGG-----TCT-----------GATGGCCTCTCTA-------CTCTCACCAAAGGAAATTTTCCCTCA---------GGGGGGGCTCC-----CATCTTATTCACAG-------------------------------------------AGGCAG------CTGAGGC---AGGACAA-TGGGGCTAACTGTGGACCAGGCAAG--GGCACAGGCTGCT--GGGGTGGCCC-CC-CTTCCCCAG----------TGTACATACAGTATCTGTGTAACATT-----------------------------TTGTA------------------------T
i rheMac8.chr7              C 0 I 30
s macFas5.chr7               65348439 220 + 171882078 AGAGCCAGAGGTT---GATGGAGTTGGTTTCTTT-------GGAGG-------------------AGG-----TGC-----------GATGGCCTCCTTA-------CTCTCACCGAGGCAACTTTTCTCACG---------G--GGTGCTCC--CATCATCTTACTCAGAG-------------------------------------------AGGCAT------CTGAGGC---GGGACAG-TGGAGCTAACTGTAGACCAGGCGAG--GGCACGGGCTGCT-AGGGGTGACCCGCC-CTTCCCCCA----------TGTACATACTGTATCTGTGTAACATT-----------------------------CTGTA------------------------T
i macFas5.chr7              C 0 I 4
s macNem1.NW_012011056v1      5390973 244 -   6271500 AGAGGCAGAGGCT---GATGGAGTTGGTTTGTTT-------AGAGG-------------------AGG-----CCT-----------GATGGCCTCCTTA-------CTCTCACCAAAGCAATTTTTCCCTCA---------G-CGAAGCTCG--TGTCTTCTTACTCGGAG-------------------------------------------AGGCAG------ATGAGGC---AGGACAG-TGGGACTAACTGTAGACCAGGCGAG--GGCACGGACTGCT-GGGGGTGGCCC-CC-CTTCCCCCA----------TGTACATATTGTTTCTGTGTAACGTT-----------------------------TTGTATATTCCGGGGGGTAGGGCTGCCCCT
i macNem1.NW_012011056v1    C 0 I 4
s cerAty1.NW_012002657v1      1852362 216 -   1987038 GGAGCCAGAGGCT---GGTGGAGCTGGTTTGTTT-------GGAGG-------------------TGG-----TCT-----------GATGGCCTCTCTA-------TTCTCACCAAAGGAACTTTTCCCTCA---------G-GGGGGCTCC-----CATCTTATTCACAG-------------------------------------------AGGCAG------CTGAGGC---AGGACAA-TGGGGCTAACTGTGGACCAGGCAAG--GGCACAGGCTGCT--GGGGTGGCCC-CC-CTTCCCCAG----------TGTACATACAGTATCTGTGTAACATT-----------------------------TTGTA------------------------T
i cerAty1.NW_012002657v1    C 0 I 30
s manLeu1.NW_012105520v1       340369 206 -   1458659 AGAGCCAGAGGTT---GATGGAGTTGGTTTGTTT-------GGAGG-------------------AGG-----TGT-----------GATGGCCTCCTTA-------C---------------TTTTTCCTCA---------G-GGGTGCTCC--CATCTTCTTACTCAGAG-------------------------------------------AGGCAT------CTGAGGC---GAGACAG-TGGAGCTAACTGTAGACCAGGCGAG--GGCACGGGCTGCT-AGGGGTGACCCGCC-CTTCCCCCA----------TATACATACTGTATCTGTGTAACATT-----------------------------CTGTA------------------------T
i manLeu1.NW_012105520v1    C 0 I 4
s aotNan1.NW_018511953v1       652108 246 -   3745603 GAAGCCAGAGGCT---GCTGGAGTTGGTTGGTTT-------GGAGG-------------------AGC-----CCT-----------GATGGCCTCCTTC-------CTCTCACCAAAGCAACTTTTCCCTCA---------G--GGGGCTCC--CATCTTCTTATTCAGAG-------------------------------------------AGGCAG------CTAAGGC---AGGACGG-TGGCGCTAACTGTGGACCAGGCGAG--GGCACGGGCTGCT--GGGG-GACCC-CC-CTTCCCCAG----------TGTACATATTGTATCTGTGTAACATGTTGTATATTTTAGGGGTCTGGGGTGCCCCGTGTA------------------------T
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             436126 247 -  31380117 AAAGCCAGAGGCT---TATAAATTTATTTTCTTTTTTTTAAGGAAG-------------------CTG-----CCTCTGGGAACAAGAAAGGGCTCCTTAGTGCCCCCTTACCCCAAAGCAGTCCTTCCCTCA---------G-G-------C--CATCTATCCTCTCTAAG-------------------------------------------AGGGAT------TTGGGGC---AGGACAG-TGGGGCAGCGCCTTGTCCAGCTTTGCTGGGCTGGGCCG----GGCCTAACTC-AA-CCTGGCCAGGACATAGGCCTGTATATATTGTATCTGTGTAGTATT-----------------------------TTGTA------------------------T
i otoGar3.GL873533          I 3691 I 10
s canFam3.chr9               55251193 296 +  61074082 AGAGCCAGAGGCTCAATAAAAACATAGTTTATTT-------AGAGGGCTCCCTTTCTTGGGGGGCAGGGGCTCCCT-----------GGTGGCCTCCTCA-------CCCCCACC-AAGCAG----TCCTTCA---------G-AGGGGCTCAGGCATCCTC-TATTCAGAGGCACTTTGGGGAACAAGTGCTCCCCCTGTCCAGCTCAATGACTGGGCAGCACTCTCCCAGGCCTTAGGACAGTTGGGGCTAACC-CAGGCCAGGCAAA--GGCATAAGCTGGTGGGGGGGGGGCC-TC-CCTCCCCAG----------TGTATATACTGTACCTGTGTAACATT-----------------------------TTGTA------------------------T
i canFam3.chr9              C 0 I 23
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183409 1800 +    584178 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e saiBol1.JH378108            5022346   0 -  54856640 C

a score=25691.000000
s hg38.chr15_KI270850v1_alt    228984  9 +    430880 CGTACC-TAG
s panTro5.chr15              18038775  9 -  83230942 CGTACC-TAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76633551  9 +  99763055 CGTACC-TAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       327553  9 +    378907 CGTACC-TAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102181821  9 + 121039945 CGTACC-TAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65348663  9 + 171882078 CGTACC-TAG
i macFas5.chr7              I 4 C 0
s macNem1.NW_012011056v1      5391221  9 -   6271500 TGTTCC-TAG
i macNem1.NW_012011056v1    I 4 C 0
s manLeu1.NW_012105520v1       340579  9 -   1458659 CCTACC-TAG
i manLeu1.NW_012105520v1    I 4 C 0
s aotNan1.NW_018511953v1       652354  9 -   3745603 CGTACC-TAG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             436383  9 -  31380117 CGCTCC-ATG
i otoGar3.GL873533          I 10 I 6
s canFam3.chr9               55251512 10 +  61074082 TGTATCATAG
i canFam3.chr9              I 23 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183409 1800 +    584178 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1852578 30 -   1987038 I
e rheMac8.chr7               60402953 30 + 169600520 I
e saiBol1.JH378108            5022346  0 -  54856640 C

a score=842102.000000
s hg38.chr15_KI270850v1_alt    228993 188 +    430880 CGGAGGTTGCAGCTGGCATATG---------------------------------------AGGAAGAGGTTCTTATAATTATTCGCGGCTG-GGAAACTTATTTATTGCTAGCATAGGAGCGAGGAAGGAGGCGGGGATGGGGTCATGGCTGCC-TGGTGA--TGGGACTCCTGttttttgttttttgttttttgcttttgattttGGAATAAATGGATTTAGCCATACT
s panTro5.chr15              18038784 187 -  83230942 CGGAGGTTGCAGCTGGCATATG---------------------------------------AGGAAGAGGTTCTTATAATTATTCGCGGCTG-GGAAACTTATTTATTGCTAGCATAGGAGTGAGGAAGGAGGCGGGGATGGGGTCATGGCTGCC-TGGTGA--TGGGACTCCTG-tttttgtttttttttttttgcttttgattttGGAATAAATGGATTTAGCCATACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76633560 177 +  99763055 CAGAGACTGGAGCTGGAATATG---------------------------------------AGGAGGAGATTCTAATCATTATTTACGGCTG-GGAAACTTATTTATTGATAGCATAGGACAGAGGAAGGAGGATGGGATGGGGTCCTGGCTGCCTTGGTGA--TGCGACTCCTG------------TTTATTTTGCTTTCCATTTTGGAATAAAGGGATTTAGCCAGACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       327562 186 +    378907 CGGAGGTTGCAGCTGGCATATG---------------------------------------AGGAAGAGGTTCTTATAATTATTCGCTGCTG-GGAAACTTATTTATTGCTAGCATAGGAGCGAGGAAGGAGGCGGGGATGGGGTCATGGCTCCC-TGGTGA--TGGGACTCCTGttttttgttt--ttttttttgcttttgattttGGAATAAATGGATTTAGCCATACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102181830 177 + 121039945 TGGAGGTTGGAGCTGGCATATG---------------------------------------GGGAGGAGGTTCTAATAATTATTTGCATCTG-GGAAACGTATTTATTGCTAGCATAGGACAGAGGAAGGAGGTGGAGATGGGGTCCTGGCTCCCTTGGTGA--TGCGACTCCTG------------TTTATTTTGCTTCTGATTTTGGAATAAATGGATTTAGCCATACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60402983 166 + 169600520 TGGAGGTTGGAGCTGGCATATG---------------------------------------AGGAGAAGGTTC---TAAGCATTTGTGGCTG-GGAAACTTATTTATTGCTAGCATAGTACAGAGGAAGGAGGCAGGGATGGGGTTGTG--------GGTGA--TGCGACTCCTG------------TTTTTTTTGCTTTTCATTTTGGAATAAATGGATTTGGCCATACT
i rheMac8.chr7              I 30 C 0
s macFas5.chr7               65348672 176 + 171882078 CGGAGGTTGCAGCTGGCATATG---------------------------------------AAGAAGAGGTTCTGATAGTTATTTGCAGCTG-GGAAACTTATTTATTGCTAGCATAGGAGCGAGGAAGGAGGCGGGGATGGAGTCATGGCTCCC-TGGTGA--TGGGACTCCTG------------TTTTCTTTGCTTTTTATTTGGGAATAAATGGATTTAGCTATACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5391230 191 -   6271500 TGGAGATTGGAGCTGGCACGGGGGAGTGGGGGATGGAAGC---------------------AGGGGAAGGTTCTAATAATTATTCGCAGCTG-GGGAACTTAT---TTGATAGCATAGGACAGAGGAAGGAGGCGGGGTTGGGTTCGTGGCTTCC-TGGCGA--TGCGACTCCTG------------TTTATTTTGCTTTTTATTTGGGAATAAATGGATTTAACCATACT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1852608 166 -   1987038 TGGAGGTTGGAGCTGGCATATG---------------------------------------AGGAGAAGGTTC---TAAGCATTTGTGGCTG-GGAAACTTATTTATTGCTAGCATAGTACAGAGGAAGGAGGCAGGGATGGGGTTGTG--------GGTGA--TGCGACTCCTG------------TTTTTTTTGCTTTTCATTTTGGAATAAATGGATTTGGCCATACT
i cerAty1.NW_012002657v1    I 30 C 0
s manLeu1.NW_012105520v1       340588 175 -   1458659 CGGAGGTTGCAGCTGGCATATG---------------------------------------AAGAAGAGGTTCTGATAGTTATTTGCAGCTG-GGAAACTTATTTATTGCTAGCATAGGAGCGAGGAAGGAGGCGGGGATGGAGTCATGGCTCGC-TAGTGA--CGGGACTCCCA------------TTTTC-TCGTTTTTTATTTGGGAATAAATGGATTTAGCCATACT
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       652363 176 -   3745603 CAGAGGTTGGAGCTGGCACATG---------------------------------------GGGAGGAGGATTCAATAATTATTTGCAGCTG-GGAAACTTATTTATTGATAGCAGAGGACAGAGGAAGGAGGCGGGGATGGGGTCGTGGCTCCC-TGGTGA--TGCAACTCCTG------------TTTATTTTGCTTTTTATTTTGGAATAAATGGGTTCAGTCACACT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             436398 210 -  31380117 CGGAGGTTGGAGCTGGCAGATGGGGAAGGGGTCTGGAACTATGATGACCTTTAAAAAAATGGGGAGGAGTTTCTAATAATTATTTGGGGCTG-GGAAACTTATTTATTG-----ATAGTAGAGAGGAAGGCTGTGGGGAGGTGGTTGTGGCACCC-TGGTGA--TGCGGCTCCTG------------TTTATCTCACTTCTTATTTCGGAATAAATGGATTTAGCCATACT
i otoGar3.GL873533          I 6 C 0
s canFam3.chr9               55251522 171 +  61074082 CAGAGGTTGGAACTGGCAAATG---------------------------------------GGGAGGAAGTTCTATTAAATATTTGGGGATGAGGAAACTTATTTATTGATAGCATAGGACAGAGGAAGGAGGCGGGGACGGGGTTCCG---CCC-AGGTGACTCACAACTTCTG-----------------TTTGCTTTTTATTTCGGAATAAATGGATTTAGCCATACT
i canFam3.chr9              C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             183409 1800 +    584178 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e saiBol1.JH378108            5022346   0 -  54856640 C

a score=1177948.000000
s hg38.chr15_KI270850v1_alt    229181 247 +    430880 GCTCGGCCTGTTATGTTCCCATTTCC-C-----TCACTG-------GGTCCTGCAGTTTGTCC------CACTGAATGAG------------------------------------------GAGCCCCAGAGTGTCTCAGCATGTCCAG----CTGGGCTGTTGGGGACCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTGGTGGATTTTATGGGGACTGCCATG---GCGCCTACAGAGTACACTCTGGCCCTGACAGCCAACTGGTT---------GAGAAGCCTGATCTAGCTGT--GG--CAGGGAAGACA-GATA-
s panTro5.chr15              18038971 247 -  83230942 GCTCAGCCTGTTATGTTCCCATTTCC-C-----TCACTG-------GGTCCTGCAGTTTGTCC------CACTGAATGAG------------------------------------------GAGCCCCAGAGTGTCTCAGCATGTCCAG----CTGGGCTGTTGGGGACCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTGGTGGATTTCATGGGGACTGCCATG---GTGCCTACGGAGTACACTCTGGCCCTGACAGCCAACTGGTT---------GAGAAGCCTGATCTAGCTGT--GG--CAGGGAAGACA-GATA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76633737 243 +  99763055 GCTCAGCGTGGTGGGTTCCCATTTCC-C-----TCACTG-------GGTCCTGGAGTTTGCGC------CACTGAATGAA------------------------------------------GAGCCCCAGAGTG----AGCATGTCCAG----CTGGGCTGTTGGGGACCTTCCAGGCCTATTACCTGTATGCTGCCTGGTGACACCTGGTAGATTGCATGGGGATTGCTATG---GCGCCTATGGGGCACAGTCCGGCCCTGACAGCCAACAGGCT---------CAGAAGCCTGATCTAGCGGT--GG--CCGGGAAGGCA-GATA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       327748 247 +    378907 GCTCGGCCTGGCATGTTCCCGTTTCC-C-----TCACTG-------GGTCCTGCAGTTTGTCC------CACTGAATGAG------------------------------------------GAGCCCCAGAGTGTCTCAGCATGTCCAG----CTGGGCTGTTGGGGACCTTCCAGGCCTGTTACCTATATGCTGCCTGGTGACACCTGGTGGATTTCATGGGGACTGCCATG---GCGCCTACGGAGTACAGTCTGGCCCTGACAGCCAACTGGTT---------GAGAAGCCTGATCTAGCTGT--GG--CAGGGAAGACA-GATA-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102182007 247 + 121039945 GCTCAGCCTGGTGTGTTCCCGTTTCC-T-----TCACTG-------GGTCCTGGAGTTTGTCC------CACTGAATGAG------------------------------------------GAGCCCCAGAGTGTCCGAGCATGTCCAG----CTGGGCTGTTGGGGATCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTGGTGGACGTCACGGGGACTGCCATG---GCACCTATGGGGCACAGTCCGGCCCTGACAGCCAACAGGCT---------CAGAAGCCTGATCTAGCAGT--GG--CCGGGAAGACA-GATA-
i nomLeu3.chr6              C 0 I 12312
s rheMac8.chr7               60403149 247 + 169600520 GCTCGGCCTGGTGTGTTCCCATTTCC-C-----TCACTG-------GGTCCTGCAGTTTGTCC------CACTGAACGAG------------------------------------------GAGCCCCAGAGTGTCTGAGCATGTCCAG----CTGGGCTGTTGGGGACCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTGGTGGATTTCACGGGGACTGCCATG---GTGCCTATGGGGCACAGTCCAGCCCTGACAGCCAACAGGCT---------CAGAAGCCTGATCTAGTGGT--AG--CCGGGAAGACA-GATT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65348848 246 + 171882078 GCTCAGCCTGGTATGTTCCCGTTTCC-C-----TCAGTG-------GGTCCTGCAGTTTGTCC------CATTGAAAGAG------------------------------------------GAGCCCCAGAGGGTCTGAGCATGCCCAG----TTGGGCTGTTGGGAATCTTCCAGGCCTGTTGTCTGGATGCTGCCTGGTGACACCTGGTGGATTTCACGGGGACTGCCATG---GTGCCTAATGGGCACAGTGCAGCCCTGACGGCCAACAGGTT---------CAGAAGACTGATCTAGCTGT--GG--CCGGGAAGACA--ACA-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5391421 235 -   6271500 GCT-AGCCCGGCATGTTTCTGTTTCC-C-----TCACTG-------GGTCCTGGAGTTTGCGC------CACTGAACGAG------------------------------------------GAGCCCCAGAGTGTCTGAGCATGTCCAA----CTGGGCTGTTGGGGACCTCCCAGGCCTGTTACCTGTATGCTGCCTGATGACGCCTGGGGGATT------------CCACG---GCACCTATGGGGCACAGTCCGGCCCTGACGGCCAACAGGCT---------CAGAAGCCTCCTCTAGCGGT--GG--CTGGGAAGGCAGGATG-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1      1852774 247 -   1987038 GCTCGGCCTGGCGTGTTCCCATTTCC-C-----TCACTG-------GGTCCTGCAGTTTGTCC------CACTGAACGAG------------------------------------------GAGCCCCAGAGTGTCTGAGCATGTCCAG----CTGGGCTGTTGGGGACCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACATCTGGTGGATTTCACGGGGACTGCCATG---GTGCCTATGGGGCACAGTCCAGCCCTGACAGCCAACAGGCT---------CAGAAGCCTGATCTAGCGGT--AG--CCAGGAAGACA-GATT-
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       340763 247 -   1458659 GCTCAGCCTGGTATGTTCCCGTTTCC-C-----TCAGTG-------GGTCCTGCAGTTTGTCC------CATTGAAAGAG------------------------------------------GAGCCCCAGAGCGTCTAAGCATGTCCAG----TTGGGCTGCTGGGGATCTTCCAGGCCTGTTGCCTGTATGCTGCCTGGTGACACCTGGTAGATTTCACAGGGACTGCCATG---GCGCCTAATGGGCACAGCGCAGCCCTGACGGCCAACAGGTT---------CAGAAGACTGATCTAGCTGT--GG--CCAGGAAGATA-GATA-
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       652539 234 -   3745603 GCTCGGCCTGGTATATTCCCGTTTCC-C-----TCACTG-------GGTCCTGGAGTTTATGG------CACAGAACGAA------------------------------------------GAGCCCCAGAGTGTCT-AGCATGTCCAG----CTGGGCTGTTGGGGACCTTCCAGGCCTGTTACCTGTGTGCTGCCTGGTGACACCTGGGGGATTTTACAGGGACTGCCATG---GCAC------------GTCCGGCCCTGACAGCCAGCAGGCT---------CAGAAGCCTGATCTAGCGGT--GG--CCAGGAAGGCA-GGTA-
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             436608 224 -  31380117 GCTC-------TGTGTTCCTTTTTCT-G-----TCACTG-------GGTCCTGGGATCTGTGC------CACTGAGCAGG-------------CAGCAGAGGGCAGACTTCTGG-TTGTTCAGAGCCCTAGAGTG--------------------GGGACTTTGGGGGACCTTCAAGGCCAGTCACTGGGGTACTGCTTGGTGAAGCCTAGAAGATTCTAGGGGGACTGCTATA---GTGGGTATGGGAAGC------------------------------------AGGAGCCTGACCTAACAGT--GG--GAGGGACAACG-GGC--
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55251693 311 +  61074082 GTTTAGCCTTGTGTGTGCCTGTTTCCAG-----TCACTGGCCCCTAGGTCCTGGAGTCTGCACTGTGGGCATTGAACAGGGAGCAGATCCTGCCAGCAGAGGGCAGACTTCTGGATTGTGCAAAGCCCCAGTGTCTCTGAGCCTGCCTAGCAAACAGAGCTGTTGGAGATGATCCAGGCCTGTCACCCCCATGCTGCTTGGGGAAGCCTGGGGGATCCCAGGGCCCCTGCCATGCATGGGACTCTAAGGAGCACTCCTGTCTTAATGGTCCAAAGGCT---------CAG-AGCCTGATCTAATCCT--GGGTTGGGGAAAGCA-GGGT-
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958             185209 259 +    584178 GCTTGGCCTTGTTTGTTCCTGCCATC-CACCGGTCACTG-------GATCCTGTGTTCCAGGT-GTGGGTACCTAGCCAG----------------------------------ATACCCTAGAACCCCAGTGTGTCTGTACACATTCAG-----TGGGCTGCTAGGGATCTTCCAGGCCTGTCATCTG-----------------CTAGGGGGATTCCACAGGGACTGCCATG---GGGCTTCTAGGGGACAGAGCTGTCATAATGACCAACAGCCTCACACTTGACAGTGGAATTCTCTAAATCTTGGG--GAGGGAAAGCA-GGGTG
i dasNov3.JH564958          I 1800 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e saiBol1.JH378108            5022346   0 -  54856640 C

a score=1838878.000000
s hg38.chr15_KI270850v1_alt    229428 379 +    430880 CCAGTGCCCAAGGGCACTGACTTCCATCCACCCCACGTGTCTT-CCATTCCGTCCCCCTGCCTC-CCTCTCCTGTCTGCACCGGGTGGC-----CTG-----TCTGTCCCTCCAGAGTGCCGGCT----GCCCCGCAGGTTCCCTCCAGGCTGAGTTCAGGGC---CCTG-CCCCTAGTGGCCAGAGCTGGCTTCACAGGGTAAGAGCCAGCTAAGCTCCAGGGACTTTCCAGGAAAAGTGTCCCTTGAAAAGGGTGTGAC--CTTTTCACTGCTCCCAACAACACCCTAAAAATGGCTTGG----------CCTTTTCCA-----------------------------------TCCCCTGAGCTCCATAGAGAAC-AC-AGCCAGCAGAGG----ACACATTCT--CTGTCATCCAGAAATGGGT----TTCTCAGTCAAGGGACAGCAGGACTG
s panTro5.chr15              18039218 380 -  83230942 CCAGTGCCCAAGGGCACTGACTTCCATCCACCCCAGGTGTCTT-CCGTTCTGTCCCCCTGCCTC-CCTCTCCTGTCTGCACCGGGTGGC-----CTG-----TCTGTCCCTCCGGAGTGCCGGCT----GCCCCGCAGGTTCCCTCCAGGTTGAGTTCAGGGC---CCTGTCCCCTAGTGGCCAGAGCTGGCTTCACAGGGTAAGAGCCAGCTAAGCTCCAGGGACTTTCCAGGAAAAGTGTCCCTTGAAAAGGGTGTGAC--CTTTTCACTGCTCCCAACAACACCCTAAAAATGGCTTGG----------CCTTTTCCA-----------------------------------TCCCCTGAGCTCCATAGAGAAC-AC-AGCCAGCAGAGG----ACACATTCT--CTGTCATCCAGAAATGGGT----TTCTCAGCCGAGGGACAGCAGGACTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76633980 388 +  99763055 CGAGCACCCAAGGCCACTGACTTCCATGCACCCCAGTCGTCTT-CGGTTCCGTCCCCTTGCCTC-CCTCTCCTGTCTGCACAGGGTGGCCTGTTCTG-----TCTGGCCCTCTAGAGTGTCAGCT----GCCCCGCAGGCT-CCTCCAGTCTGAGTTCATGGT---CCTGCCCCCTAGTGGCCAGAGTTGGCTTCACAGGATAAGAGCCAGCTAAGCTCCAGGGGCTTTCCAGGAAAAGTGTCCCTTGGAAAGGGTGTGGC--CTTTTCACCGCTCCCAGCAGCACCCTAGAAATGGCTTGG----------CTTTTTCCC-----------------------------------TCCCCTCAGCTCCACAGAGAAC-AC-AGCCAGCAGAGG----ACATATTCC--CCGTCATCCAGAAATGGGTTTGATTCTCAGCCAAGGGACAGGAGGACTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       327995 380 +    378907 CCAGCGCCCAAGGGCACTGACTTCCATCCACCCCAGGTGTCTT-CCGTTCTGTCCCCCTGCCTC-CCTGTCCTGTCTGCACCAGGTGGC-----CTG-----TCTGTCCCTCCAGAGTGCCGGCT----GCCCCGCAGGTTCCCTCCAGGCTGAGTTCAGGGC---CCTGTCCCCTAGTGGCCAGAGCTGGCTTCACAGGGTAAGAGCCAGCTAAGCTCCAGGGACTTTCCAGGAAAAGTGTCCCTTGAAAAGGGTGTGAC--CTTTTCACTGCTCCCAACAACACCCTAAAAATGGCTTGG----------CCTTTTCCC-----------------------------------TCCCCTGAGCTCCATAGAGAAC-AC-AGCCAGCAGAGG----ACACATTCT--CTGTCATCCAGAAATGGGT----TTCTCAGCCGAGGGACAGCAGGACTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18833421 362 - 121039945 CCAGCGCCCAAGGGCACTGACTTCCATCCACCCCAGGTGTCTT-CCGTTCTGTCCCCCTGCCTC-CCTC------------------GC-----CTG-----TCTGTCCCTCCAGAGTGCTGGCT----GCCCCACAGGCTCCCTCCAGGCTGAGTTCACGGC---CCTGTCCCCTAGTGGCCAGAGCCAGCTTCACAGGATAAGAGCCAGCTAAGCTCTAGGGACTTTCCAGGAAAAGTGTCCCTTGAAAAGGGTATGAC--CTTTTCACCACTCCCAACAGCACCCTAAAAATGGCTTGG----------CCTTTTGCC-----------------------------------TCCCGAGAGCTCCATAGAGAAC-AC-AGCCAGCAGAGG----ACACATTCT--CTGTCATCCAGAAATGGGT----TTTTCAGCTGAGGGACAGCAGGACTG
i nomLeu3.chr6              n 12312 C 0
s rheMac8.chr7               60403396 387 + 169600520 CCAGCACCCAAGGCCACTGACTTCCATCCACCCCAGGCATCTT-CCTTTCTGTCCCCTTGCCTC-CCTCTCCTGTCTGCACCTGGTAGC-----CTGTTGTGTCTGTCCCTGCAGAGTGCTGGCT----ACCCCGCAGGCT-CCTCCAGGCTGAGTTCATGGC---CATGCCTGCTAATGGCCAGAGTCAGCTTCACAGGATAAGAGTCAGCTAAGCTCCAGGGGCTTTCCAGG--AAGTGTCCCTTGGAAAGGCTGTGGC--CTTTTCACTGCTCCCAACAGCATTCTAGAAATGGCTTGG----------CCTTTTCCC-----------------------------------TCCCCTGAGCTGCACAGAGAACAAC-AGCCAGCACAGG----CCACATTCC--CTGTCATCCAGAAACAGGTTTGATTCTCAGCTGACGGACAGCAGGACTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65349094 384 + 171882078 CCAGCACCCGAGGGCACTGACTTTCACCCACCCCAGGTGTCTT-CCATTCCGTCCCCCTGCCTC-CCTCTCCTGTCTGCACCGGGTGGC-----CTG-----TCTGTCCCTCCAGAGTGCAGGCT----GCCCCGCAGGCTCCCTCCAGGTTGAGTTCACGGC---CCTGCCCCCTAGTGGCCAGATCCGGCTTCACAGGATAAGAACCCGCTAAGCTCCAGGGACTTTCTAGGAAAAGTGTCCCTTGGAAAGGGTGTGAC--CTTTTCACCGCTCCCAAAAGCACCCTAAAAATGGCTTGG----------ACTTTTCCC-----------------------------------TCCCCTGAGCTCCACAGAGAAC-AC-AGCCAGCAGAGG----ACACATTCT--CTGTCATCCAGAAATGGGTTGGAGTCTCAGCCGAGGGACAGCAGGACTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      5391656 382 -   6271500 CCAGCACCCAAGGGCATTGACTTCCATGCACATGAGGCGGCTT-CCTTTCGGCCACCCTGCCTC-CCTCGCCTGTCTGCACCTAGTGGC-----TTAT--TCTCTGTCCCTCCAGAGTGCCGAC-----GCCGCTCACCCTCCCTCCAGGCTGAGTTCATGGC---CCTGCCCCCTAGTGGCCAGAACCGGCTTCACAGGATGAGAG-CCGCTAAGCTCCAGGGGCTTTCCAGGAAAAGTGTCCCTTGGAAAGTATGTGGC--CTCTTCACTGCTCCCAA---TACCCTAGTAATGGCTTGG----------CCTTTCCCC-----------------------------------TCCGCTCAACTCCACAGACAAC-AC-AGCCAGGAGAGG----ACACATTCC--CTGTCATCCAGAAATGGGTTTGCTTGTCAGCCAAGGGACAGCAGGACTG
i macNem1.NW_012011056v1    C 0 N 0
s cerAty1.NW_012002657v1      1853021 386 -   1987038 CCAGCACCCAAGGCCACTAACTTCCATCCACCCCAGGCATCTT-CCTTTCTGTCCCCTTGCCTC-CCTCTCCTGTCTGCACCTGGTAGC-----CTGTTGTGTCTGTCCCTGCAGAGTGCTGGCT----ACCCCCCAGGCT-CCTCCAGGCTGAGTTCATGGC---CATGCCTGCTAATGGCCAGAGTCAGCTTCACAGGATAAGAGTCAGCTAAGCTCCAGGGGCTTTCCAGG--AAGTGTCCCTTGGAAAGGCTGTGGC--CTTTTCACTGCTCCCAACAGCATCCTAGAAATGGCTTGG----------CCTTTTCCC-----------------------------------TCCCCTGAGCTGCACAGAGAAC-AC-AGCCAGCAGAGG----CCACATTCC--CTGTCATCCAGAAACAGGTTTGATTCTCAGCTGACGGACAGCAGGACTG
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       341010 367 -   1458659 CCAGCAC----------TGACTTTCACTCACCCCAGGTGTCTT-CCATTCCGTCCTCCTGCCTC-CTTCTCCTGTCTGCACCAGGTGGG-----CTG-----TCTGTC----CAGAGTGCCTGCT----GCCCCGCAGGCTCCCTCCAGGTTGAGTTCACGGC---CCTGCCCCCTAGTGGCCAGAGCGGGCGTCACAGGATAAGAGCCAGCTAAGCTCCAGGGACTTTCCAGGAAAAGAGTCCCTTGGAAAGGGTGTGAC--CTTTTCACCACTCCCAAAAGCA---TAAAAATGGCTTGG----------ACTTTTCCC-----------------------------------TCCCCTGAGCTCCACAGAAAAC-AC-AGCCAGCAGAGG----ACACATTCT--CTGTCATCCAGAAATGAGTTGGATTCTCAGCCGAGGGACAGCAGGACTG
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       652773 388 -   3745603 CCAGTACCCAAGGGCACTGACTTCCATCCACCCCAGGCGTCTT-TCTTCCA--CCCCCTGCCTC-CCTCTCCTGTCTGCCCCCGGTGGC-----CTGTTCTGTCTGTCTCTCCAGAG-GCCGGCC----GCCCCGCAGGCTCCCTCCAGGCTGAGTTCGTGGCACTCCTGCCCCCTAGTGGCCAGAGCCAGCTTCACAGGATAAGA-CCAGCTAAGCTCCAGGGACTTTCCAGGAACAGTGTCCCTTGGAAAGGGTGAGGC--CTTTTCACCGCTCCCAACAGCACCCCAGAAATGGCTTGG----------CCTTTCCTC-----------------------------------TCCTCTGAGCTCCACAGAGAAC-AC-AGTCCACAGAGG----ACACATCCC--CCGTCATCCAGAAATGGGTTTGACTCTCCTCCGAGGAACAGCAGGACTG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             436832 390 -  31380117 ----TGCCCTGGGGT-----------------CCAGGCAGCTT-CCATTCCATTC-----CTTC-ATTCCCCTGTGTGGACCTGGTGGC-----CTG-----TTCTTCCCTCTGGGGAACCAGTC-TCAGCCCTGTGTCAT-TCTCC---CTGAGCTCATGGT---CCTGTTCCCCAGTGGTCAGGATGGGGTTCACAGGATGGAGATGAGCTAAGCTCTGGGTGCTTTCCAAGGAGG-----CCCTGGGAAGGATGTGGC--CTCTTCACCACTCTGGATAGCACCGTAGCAATGGCTGGG----------CCCTTCCCCATCCCTTTTCCCTAATGTTTAAAAAACTTTTACTTCCCACTGAGCTCCAGAGAAGAC-ACAAACCAGCAGAGG----ACACAATGTTGCCGTCATCCAGAAGTGGGTTTTATTCTCAGCTGAGAGACAGCAAGACTG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55252005 401 +  61074082 CTCGCAC-CAAGAGTGCTGCCTTCCAGT----TCAGGCACTTTGCCCTCTCATCACCCTGGCCC-TCT---------------GGTGGC-----CTGTTGT-CCTTCCCCTGCACAGTGCGTGCCAGGGGCCCCCAATCCTCCTTCTGGGCTGAGTTGGTGCC---CCTGCCCCCTAGTGGGCAGAGCAGGCTTCCCAGAAAGATAACCCATGAATCCGCAGGTGCTTTCCCAGTAGG-----CCCTGGAAAGGACAGGACCTCTCTTCGCCACTCATCCCAACACCCTAGCAATGGTGGGG----------CCCTTCCCCACCGCTTCATCCCAAGGTTGAAGCCTTCCCCT---TCCCCTGAACTCCACA-AAAAC-ACAAGCCAGCAGAGG----ACA-GTCTC--CCATCGTCCAGAAATGGGTTTTATTCTCAGCCAAGAGACAGCAAGACTG
i canFam3.chr9              I 1 I 3
s dasNov3.JH564958             185468 364 +    584178 CCAGAACCCAAGAAAGCC--------TTCATTCTAGGC-TTTT-TCATCCCAGCATACTGCCCCATCTTACCTCTATGTACCT-GTAGT-----CTATTCCTCATATCCTTCCAGAGTGCAGGCT----GA-----------GTCCCAGGCTAAATTCATGAT---CCTGCCCCGCAGTGGCCAGAGCAAAGCTTACAG----ACGACAAGCTGACCTCCAGGTGCTTTCCAAGTAGG------CTTAGAAATGAAGGGGT--CTTCT-GCCACTCCTCCCAGTGTCTTAGCAATGGCTGGGCCCTCCCTCACCCTTCCCC-----------------------------------ACCCCTTAGCTCCACAGAGAAT-AC-AGCCAGCAGAGAAGACACACGTTCT--C---CATCCAGAAATGGGTTTTATTCTCAGCCAGAATAAAACAG-----
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e saiBol1.JH378108            5022346   0 -  54856640 C

a score=197066.000000
s hg38.chr15_KI270850v1_alt    229807 53 +    430880 GT-AGAGACTGTCAGGCCACACAGCTGCCTGCACAGCACCGCC--ATGCTTG--GCCA
s panTro5.chr15              18039598 53 -  83230942 GT-AGAGACTGTCAGGCCACACAGCTGCCTGCAGAGCACCGCC--ATGCTTG--GCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              76634368 51 +  99763055 GT-AGAGACTGTCAGGCCACACAGCTGCCTGCACAGCACCCCC--ATGCTTG--GT--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       328375 54 +    378907 GTAAGAGACTGTCAGGCCACACAGCTGCCTGCAGAGCACCGCC--ATGCTTG--GCCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18833783 53 - 121039945 GT-AGAGACTGTCAGGCCACACAGCTGCCTGCACAGCGCTGCC--ATGCTTG--GCCA
i nomLeu3.chr6              C 0 I 244
s rheMac8.chr7               60403783 51 + 169600520 GT-AGAGACTGTCAGGCCACACGGCTGCCTGCACAGCACCCCC--ATGCTTG--GT--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65349478 50 + 171882078 ---GAAGACTGTCAGTCCACACAGCTGCCTGCACAGCACCCCC--ATGCTTG-CCC--
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1853407 51 -   1987038 GT-AGAGACTGTCAGGCCACACGGCTGCCTGCACAGCACCCCC--ATGCTTG--GT--
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       341377 51 -   1458659 ---GAAGACTGTCAGTCCACAGAGCTGCCCACACAGCACCCCC--ATGCTTGCCCA--
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       653161 51 -   3745603 GT-AGAGACTGTCAGGCCACAGGGCTGCCTGCACAGCACCCCC--ATGCTTG--GC--
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             437222 47 -  31380117 GT-AG----CATCAGACCACACGGCAGCCTGGACAGCACCCCC--ATGCTTC--CA--
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55252409 44 +  61074082 GC-AGAG-------GACCACACAGCTGCCAGTACAGCGCCCCCCTGTGCTCG------
i canFam3.chr9              I 3 C 0
s dasNov3.JH564958             185832 39 +    584178 -----AGAC-------CCACACGGCCGCCAGGGCAGCACCCCC--TTGTTCT--G---
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5022346  0 -  54856640 C

a score=333220.000000
s hg38.chr15_KI270850v1_alt    229860  74 +    430880 GAAGGGCGGGAGGGATGGC-----------------------------------GGGGGCTGGCTGTCCACAGGCCGCGCATGTCCCGGAAGCTCACTGGAGGTGGTGC
s panTro5.chr15              18039651  74 -  83230942 GAAGGGCCGGAGGGATGGC-----------------------------------GGGGGCTGGCTGTCCACGGGCCGCGCATGTCCCGGAAGCTCACTGGAGGTGGTGC
i panTro5.chr15             C 0 N 0
s panPan2.chr15              76634419 109 +  99763055 GGGGGGTGGGAGGGATGGCGGGGGGTGGGACGGCGGGGGGTGGGTCGGATGGCGGGGGGCTGGCTGTCCACAGGCTGGGCATGACAGGCAGGCTCACTGGAGGTGGCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       328429  74 +    378907 GAAGGGCGGGAGGGATGGC-----------------------------------GGGGGCTGGCTGTCCACAGGCCGTGCATGTCCCGGAAGCTCACTGGAGGTGGTGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102194566  71 + 121039945 GGGGGGTGGGAGGGATGGC--------------------------------------GTCTGGCTGTCCACAGGCTGGGCATGACAGGGAGGCTCACTGGAAGTGGCGC
i nomLeu3.chr6              I 12312 C 0
s rheMac8.chr7               60403834  74 + 169600520 GGAGGGTGGGAGGGATGGC-----------------------------------GGGGGTTGGCTGTCCACAGGCTGGGCATGACAGGGAGGCTCACTGGAGGTGGCGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65349528  74 + 171882078 AGGAGGCGGGAAGGATGGC-----------------------------------GGGGGCTGGCTGTCCACAGGCCGGGCATGACAGGGAGGCTCCCTGGAGGTGGTGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1853458  74 -   1987038 GGAGGGTGGGAGGGATGGC-----------------------------------GGGGGCTGGCTGTCTACAGGCTGGGCATGACAGGGAGGCTCACTGGAGGTGGCGG
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       341428  74 -   1458659 GAAGGGCGGGAAGGATGGC-----------------------------------GGGGACTGGCTGTCCACAGGCCGGGCATGACAGGGAGGCTCCCTGGAGGTGGTGC
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       653212  56 -   3745603 -AGGGGTGGGAGGGATGGC-----------------------------------GGGGCCTGG-----------------GTGACAGAGAGGCTCACTGGAGGTGGCGC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             437269  67 -  31380117 ------GGGGAGGGGTGG------------------------------------GAGGGCTAGCAGTCCAGGGGCTGGACATGACAGGAAGGCTCACTGGCGGTGGCAC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55252453  70 +  61074082 --AGCGGGGGAGGGACGGA-----------------------------------AGAG--TGGCCGTCCACAGGCCGGGCATGACAGGGAGGCTCATCGGAGGTGGCAC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             185871  83 +    584178 --AGGGGGAGAGGGATGGGGGTCCGTCAGA------------------------GGGGTCTGGCTATCCACAGGCTGGGCATGACAGAGAGGCTCACTGGAAGTGGAAC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e saiBol1.JH378108            5022346   0 -  54856640 C

a score=494665.000000
s hg38.chr15_KI270850v1_alt    229934  98 +    430880 ACTTTGGAG-----GGGCGATGTCAGGA-GACAGCTTCCTCTT---GCTGGTCTACAAGACTCCACAAGCACAGCACGGGGACTGATTCCCAGTGCTAGAGGTGAGG
s panTro5.chrY               25691622  98 -  26350515 ACGTTGGAG-----GGGCGATGTCAGGA-GACAGCTTCCTCTT---GCTGGTCTACAAGACTCCACAAGCACAGCACGGGGACTGATTCCCAGTGCTAGAGGTGAGG
i panTro5.chrY              N 0 C 0
s panPan2.chr15              76634528  98 +  99763055 ACTTTGGAG-----GGGCAGTGTCAGGG-GAGACCTTCCTCTT---GTTGGGCCACAAGACTCCACAAGGACAGCACGGTGACTGATTCCCAGTGCTAGAGGCGAGG
i panPan2.chr15             C 0 I 182
s gorGor5.CYUI01015946v1       328503  98 +    378907 ACTTTGGAG-----GGGCGATGTCAGGA-GACAGCTTCCTCTT---GCTGGTCTACAAGACTCCACAAGCACAGCACGGGGACTGATTCCCAGTTCTAGAGGTGAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102194637  98 + 121039945 ACTTTGGAG-----GGGCAATGTCAGGG-GAGAGCTTCCTCTT---GTTGGGCCACAAGACTCCACAAGGACAGCACAGTGACTGATTCCCAGTGCTAGAGGTGAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60403908  98 + 169600520 ACTTTGGAG-----GGGCGATGTCGGGG-GATAGCTTTCTCTT---CTTTGGCCACAAGACTTCAAAAGGACAGCACGGGGACTGATTCCTAGTGCTAGAAGGAAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65349602 103 + 171882078 CCTTTCGAGGGGCAGGGCAATGTCAGGA-GACAGCTTCCTCTT---GTTGGGCCACAAGACTCCACAAGGACAGCACGAGGACTGATTCCCAGTGCTAGAGGCCAGG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1853532  98 -   1987038 ACTTTGGAG-----GGGCGATGTCGCGG-GATAGCTTTCTCTT---CTTTGGCCACAAGACTTCAAAAGGACAGCACGGGGACTGATTCCTAGTGCTAGAAGCAAGG
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       341502  98 -   1458659 CCTTTCGAG-----GGGCAATGTCAGGA-GACAGCTTCCTCTT---GTTGGGCCACAAGTCTCCGCAAGGACAGCACGAGGACTGATTCCCAGTGCTAGAGGCCAGG
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       653268  98 -   3745603 ACTTTGGAA-----GGGCAGTGTCAGGG-GACAGCTTTCTCTT---GCTGGGCCACAAGACCCCACAGGGACAGCACGGTGACTGACTCCCAATGCCAGAGGCGAGG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             437336 101 -  31380117 ACTTTGAAG-----CCAGGATGTCAGGG-GACAGCGTTCCCTGATAGTTGGGCCACGAGACTCCACAAGGACAGCACGGTGATTGATTGCCAGCACTGGAGGTGAGG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55252523 103 +  61074082 ACTTTGGAG----AGGGGGATGTCAGGGTGACAGTGTTCCCCTGTAGTTGGACCACAAGACTCCTCAAGGACAGCGTGGTGATTGGTTCCCAACACTAGAGGCGAGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             185954 101 +    584178 ACTTTGGAG-----GGG-GATGTCAGGGTGACGGCATTTCCTTGTAGTTGGGCCACAAGACTCCACAGGGACTGCACGGTGCTTGATTCCCAACACTAGAGGCAAGG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e saiBol1.JH378108            5022346   0 -  54856640 C

a score=11153.000000
s hg38.chr15_KI270850v1_alt    230032 4 +    430880 CAGT
s panTro5.chrY               25691720 4 -  26350515 CAGT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       328601 4 +    378907 CAGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102194735 4 + 121039945 CAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60404006 4 + 169600520 TGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65349705 4 + 171882078 CAGT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1853630 4 -   1987038 TGAT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       341600 4 -   1458659 CAGT
i manLeu1.NW_012105520v1    C 0 M 685
s aotNan1.NW_018511953v1       653366 4 -   3745603 CGGT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             437437 4 -  31380117 CTGT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55252626 4 +  61074082 CTGT
i canFam3.chr9              C 0 I 2
s dasNov3.JH564958             186055 4 +    584178 CTGT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76634626 182 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e chlSab2.chr29              21075958 0 -  24206276 I
e saiBol1.JH378108            5022346 0 -  54856640 C

a score=52798.000000
s hg38.chr15_KI270850v1_alt    230036 43 +    430880 --TGGCCACg----------tgtatatatgtatatgtgtgtgtgtgtgtgtgtgt
s panTro5.chrY               25691724 39 -  26350515 --TGGCCACG----------TATATATAtgtata----tatgtgtgtgtgtgtgt
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       328605 39 +    378907 --TGGCCACa----------tatatatatgtata----tatgtgtgtgtgtgtgt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102194739 39 + 121039945 --CGGCCCtg----------tgtaggtgtatgtg----tgtgtgtgtgtgtgtat
i nomLeu3.chr6              C 0 I 5706
s rheMac8.chr7               60404010 27 + 169600520 --CGGCCACg----------------------tg----tgtgtgtgtgtgtatat
i rheMac8.chr7              C 0 I 6
s macFas5.chr7               65349709 49 + 171882078 --TGGCCACgtgtgtgtgtgtgtgtgtgtgtttg----tgtgtgtgtgtgtgtgt
i macFas5.chr7              C 0 I 6
s cerAty1.NW_012002657v1      1853634 25 -   1987038 --TGGCCACG----------------------------TGTGTGTGTGTGTATAT
i cerAty1.NW_012002657v1    C 0 I 6
s aotNan1.NW_018511953v1       653370 29 -   3745603 --CAGCCACG----------TGTAGGCGTGTATA----TATATGT----------
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             437441 31 -  31380117 --CAGCCata----------tatatgtatatata----tatatgaat--------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55252632 33 +  61074082 --CAGCCATA----------TAtgtatgtgtgtg----tgtgtgtgtgt------
i canFam3.chr9              I 2 C 0
s dasNov3.JH564958             186059 37 +    584178 GTCTGCCata----------tatatatgtatgta----tacatatgtgagt----
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76634626 182 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       341604 685 -   1458659 M
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5022346  0 -  54856640 C

a score=-2186.000000
s hg38.chr15_KI270850v1_alt    230079 12 +    430880 gtgAGAGAGAGA
s panTro5.chrY               25691763 12 -  26350515 gtgAGAGAGAGA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       328644  6 +    378907 gtgAGA------
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18834080  6 - 121039945 atgaga------
i nomLeu3.chr6              I 244 C 0
s rheMac8.chr7               60404043  6 + 169600520 ATTACT------
i rheMac8.chr7              I 6 C 0
s macFas5.chr7               65349764  6 + 171882078 gtgAGA------
i macFas5.chr7              I 6 C 0
s cerAty1.NW_012002657v1      1853665  6 -   1987038 ATTACT------
i cerAty1.NW_012002657v1    I 6 C 0
s aotNan1.NW_018511953v1       653399  4 -   3745603 --GAGT------
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             186096  0 +    584178 C
e canFam3.chr9               55252665  0 +  61074082 C
e otoGar3.GL873533             437472  0 -  31380117 C
e panPan2.chr15              76634626 182 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       341604 685 -   1458659 M
e chlSab2.chr29              21075958  0 -  24206276 I
e saiBol1.JH378108            5022346  0 -  54856640 C

a score=638676.000000
s hg38.chr15_KI270850v1_alt    230091 139 +    430880 ATTTATAGCTATTTATAGAACAGGGCAGGGGC-ATACCACAGAGGGGGCACAAG-TTTCAGCAATGGTCACACCTGGACGTGTCAGCTCACCGCTACAACAGACTAAGTCACAGAAGAAGGGGGCTGGCTTTGGAGCTGGG
s panTro5.chrY               25691775 140 -  26350515 ATTTATAGCTATTTATAGAACAGGGCAGGGGC-ATACCACAGAGGAGGCACAAGTTTTCAGCAACGGTCACACCTGGACATGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAAGGTGGCTGGCTTTGGGGCTAGG
i panTro5.chrY              C 0 C 0
s panPan2.chr15              76634808 139 +  99763055 ATTTATAGCTATTTATAGAACAGGGCAGGGGC-ATACCACAGAGGGGCCACAAGTTTTCAGCAATGGTCAAACCTGGATGTGTCAGCTCACCACTACAACAGACTAAGTCACCGATGAAGGGTGCTGGCTTTGGGGCT-GG
i panPan2.chr15             I 182 C 0
s gorGor5.CYUI01015946v1       328650 140 +    378907 ATTTATAGCTATTTATAGAACAGGGCAGGGGC-ATACCACAGAGGGGGCACAAGTTTTCAGCAACGGTCACACCTGGACGTGTCAGCTCACCGCTACAACAGACTAAGTCACAGATGAAGGGGGCTGGCTTTGGGGCTGGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18834086 140 - 121039945 atttatagctatttataGAACAGGGCAGGGGC-ATACCACAGAGGGGGCACAAGTTTTCAGCAACGGTCACACCTGGATGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAAGGGGGCTGGCTTTGGGGCTGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60404049 132 + 169600520 ATTTATAGCTATTTACAGAACAGGGCAGGGGC-ATACCACAGAGGGGGCACAAGTTTTCAGCAACAGTCACAGCTGGAAGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAA-------GGCTTTGGGAGTG-G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65349770 140 + 171882078 ATTTATAGCTATTTATAGAACAGGGCAGGGGC-ATACCACAGAGGGGGCACAAGTTTTCAGCAACGGTCACAGCTGGATGTGGCAGCTCACCACTACAACAGACTAAGTCACAGATGAAGGGGGCTGGCTCTGGGGCTGCG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1853671 132 -   1987038 ATTTATAGCTATTTATAGAACAAGGCAGGGGC-ATACCACAGAGGGGGCACAAGTTTTCAGCAACGGTCACACCTGGAAGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAA-------GGCTTTGGGAGTG-G
i cerAty1.NW_012002657v1    C 0 C 0
s aotNan1.NW_018511953v1       653403 125 -   3745603 ATTTATAGATATTTCTAGAACAGGGCAGGGGC-GTGCCACAGAGGGGG---------------ATGGTCACACCTGGATGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAAGGGGGCTGCCTTTGGGGCTGGG
i aotNan1.NW_018511953v1    C 0 I 19268
s otoGar3.GL873533             437472 136 -  31380117 atttatagatatttataGAAT--GGCAGGAGCGATACCACAGAGGGG-CACAAGTTTTCACCAGCA-TCACACCTGGATGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAAGGGGGC-GGCTTTGGGGCTGGG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55252665 138 +  61074082 ATTTATAGTTATTTATAGAATGGGATAGGAGCAATACCACAGAGGGG-CACAAGTTTTCACCAATA-TCACGCCTGGATGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAAGGGGGA-GGCTTTGGGGCTGGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             186096 137 +    584178 atttatagatatttataGAACAGGGCAGGAGCAGTAC--CAGAGGGGGCACAAGTTTTCACCAACA-TCACGCCTGGATGTGTCAGCTCACCTCTACAACAGACTAAGTCACAGAAGAAGGCAGA-AGTTTGGGGGGTAGG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       341604 685 -   1458659 M
e chlSab2.chr29              21075958   0 -  24206276 I
e saiBol1.JH378108            5022346   0 -  54856640 C

a score=1595789.000000
s hg38.chr15_KI270850v1_alt    230230 496 +    430880 GGAGCCACTGTCAAGTCACAGGACACCCGCCCAGGCAGGCTTGGAAAGGGAGGTCTCTGA-GAA---GAGGGATCTGTTTAGAGGTCGAAGTGGGGCCTGGGGCTCTCAGGATGGGATGGACTTGCCTGACCCGATCAGCTGGCAGTTGGAGAGAAAGCAGAGAGAAAACGGGTTAGAGA--AAAGCC-----AGAGCTGGTGAGGCAAGTGCAGA-GTATGGGTGCGCTGC--AGCAGCTGT-GGAGGGCCGGGGA----GGGGAGGGCGTAGG-TGTGGGCAT---GGC-AAGGTTCCTGGAAAagag--gggctggaagggaaagg------gga------ggga---gatggagggag---------------aagccagagCTT-CATAGGTAGT---GCCTGGGGACTGCGGCGGCCCTCCCTACCCCACACACGCTGGCCTGTCTCATGGAACCCAGGCAATCCACCCATCCACCCACAGTT-CAGACCA-ATGC-CAGCTCCCTCGGGCT-----------TCCCTCTTCTGTGGTCCCCATGTCTTCCAACCCACTGGCCC
s panTro5.chrY               25691915 500 -  26350515 GGAGCCACTGTCAAGTCACAGGACACCCACCCAGGCAGGCTTGGAAAGGGAGGTCTCTGA-GAAGAGGAGGAATATGTTTAGAGGTCAAAGTGGGGCCTGGGGCTCTCAGGATGGGATGGACTTGCCTGACCCGATCAGCTGGCAGTTGGAGAGAAAGCAGAGAGAAAATGGGTTAGAGA--AAAGCC-----AGAGCTGGTGAGGCAAGTGCAGA-GTATAGGTGCGCTGC--AGAAGCTGTGGGAGGGCCGGGGA----GGGGAGGGCATACC-TGTGGGCAT---GGC-AAGGTTCCTGGAAAAGAG--GGGCTGGAAAGGAAAGG------GGA------GGAA---GATGGAGGGAG---------------AAGCCAGAGCTT-CATCGGTAGT---GCCTGGGGACTGTGGCGGCCCTCCCCACCCCACACATGCTAGCCTCTCTCATGGCACCCAGGCAATCCACCCATCCACCCACAGTT-CAGACCA-ATGC-CAGCCCCCTCGGGCT-----------TCCCTCTTCTGTGGTCCCCATGTCTTCCAACCCACTGGCCC
i panTro5.chrY              C 0 C 0
s panPan2.chr15              76634947 496 +  99763055 GGAGCCACTGTCAAGTCACAGGACACCCGCCCAGGCAGGCTTGGAAAGGGAGGTCTCTGA-GAAGAGGAGG-ATCTCTTTAGAGGTTGAAGTGGGG-CTGGAGCTCTCAGGATGGGATGGACTTGCCTGACCCAATCAGTTGGCAGTTGGAGAG-AAGCAGAGAGAAAATAGGAGAGAGA--AAAGCAAGCAGAGAGCTGGTGATGCAAGCGCAGA-GCACGGGCATGTCAC--AGCAGCTGTGGGAGGGCCGGGGA----GGGGAGCGCGCAGG-TGCGGGTGT---AGCAAAGGTTCCTGGAAAACAG--GGACTGGAAGGGAAAGG------GGA------GGAA---GATGGAGGGAG---------------AAGCCAGAGCTT-CACATGTAGT---GCCTGGGGGCTGCGGCAGCCCTCCCCAGCTCACACACACTGGCCTCTCCCATGGCACCCAGGCA--------GTGCACCCACACTT-CAGACCA-ATGCTCAGCCGCTTTGGGCT-----------TCTCTCTTCTCTGGTCACCCTGCCTTCCAACCCACTGGCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       328790 499 +    378907 GGAGCCACTGTCAAGTCACAGGACACCCACCCAGGCAGGCTTGGAAAGGGAGGTCTCTGA-GAAGAGGAGGAATCTGTTTAGAGGTCGAAGTGGGGCCTGGGGCTCTCAGGACAGGATGGACTTGCCTGATTCGATCAGCTGGCAGTTGGAGAGAAAGCAGAGAGAAAACGGGTTAGAGA--AAAGCC-----AGAGCTGCTGAGGCAAGTGCAGA-GTATGGGTGCGCTGC--AGCAGCTGTGGGAGGGCCGGGGA----GGGGAGGGCGTAGG-TGTGGGCAT---GGC-AAGGTTCCTGGAAAAGAG--GGGCTGGAAAGGAAAGG------GGA------GGAA---GATGGAGGGAG---------------AAGCCAGAGCTT-CATAGGTAGT---GCCTGGGGACGGCGGC-GCCCTCCCTACCCCACACATGCTGGCCTGTCTCACGGAACCCAGGCAATCCACCCATCCACCCACAGTT-CAGACCA-ACGC-CAGCCCCCTCGGGCT-----------TCCCTCTTCTGTGGTCCCCATGTCTTCCAACCCACTGGCCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18834226 497 - 121039945 GGAGCCACTGTCAAGTCACAGGACACCTGCCCAGGCAGGCTTGGAAAGGGAGGTCTCTGA-GAAGAGGAGGGATCTGTTTAGAGGTCGAAGGGGAGCCTGGGGCTCTCAGGATGGGATGGACTTGCCTGACCCGATCAGCTGGCAGTTGGAGAGAAAGCAGAGAGAAAACGGGTTAGAGA--AAAGCC-----AGAGCTGGTGAGGCAAGTGCAGA-GTATGGGTGCGCTGC--AGCAGCTGTGGGAGGGCCGGGGA----GGGGAGGTCATAGG-TGTGGGCAT---GGC-AAGATTCCTAGAAAA-----GGGCTGGAAGGGAAAGG------GGA------GGAA---GATGGAGGGAG---------------AAGCCAGAGCTT-CACAGGTAGT---GCCTGGGGGGCGTGACGGCCCTCCCCACCCCACACACGCTGGCCTCTCTCATGGCACCCAGGCAATCCACCCATCCACCCACAGTT-CAGACCA-ATGC-CAGCCCCCTCGGACT-----------TCGCTCTTCTCTGGTCACCTTGTCTTCCAACCCACTGGCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60404181 491 + 169600520 GGATCCACTGTCAAGTCACAGGACACCCGCACAGGCAGGCTTGGAAAGGGAGGCCTCCGA-GAAGAG--AGGATCTGTTTAGAGGTCAAAGTGGGGCCTGGGGCTTTTAGGACGGGATGGACTTGCCTGACCCGTTCAGCGGGCAGTTGGAAAGAAAGCAGAGAGAAAACGGATTAAAGA--AAAGCC-----AGAGCTGGTGAGGCAAGCGCAAA-GCAGTGGTATGCTGC--AGCAGCTGTGGGAGGGCTGGAGA----GGGAAGGGCGCAGGTTGCGGGTGT---GGC-AAGGTTCCTGGAACACAA--GGACTGGAAGGGAAAGG------GGA------GGAA---GATAGAGGGAG---------------AAGCTGAAGCTT-CTTAGGCGGT---GCCTGGGGGCTGTGGCAGCCATCTCCACCCCACACACGCTGGCCTCTCCCAAGGCACCCAGGCA--------GTGCACCCATAGTT-CAGACCA-ATGCTCAGCCCTCTTGGGTT-----------TCTCCCTTCTCTGGTCACCCTGTCTTCCAACCCAC-GGCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65349910 488 + 171882078 GGAGCCACTGTCAAGTCACAGGACACCCGCCCAGGCAGCCTTGGAAAGGGAAATCTCTGA-GAAGAGGAGGGATCTGTTCAGAGGTCGAAGGGGGACCTGGGGCTCTCAGGACGGGATGGACTTGCCTGACCCAATCAGCTGGCA-TTGGAGAGAACGCAGAGAGAAAACAGGTTAGAGA--AAAGCC-----AGAGCTGGTGAGGCAAGTGCAGA-GCATGGGTGCACCGT--AGCAGCTGCGAGAGGGCCGGGAA----GGGGAGAGTGTAAG-TGTGGGCAT---GGC-AAGGTTCCTGGAAAAGAG--AGGCTGGAAGGGAAAGG------GGA------GGAA---GATGGAGGGAG---------------AAGCCAGAGCTT-CATAGGAAGT---GCCCGGGGGCTGCGGCGGCCCTCCCCACCCCACACACGCTGACCTCTCTCATGGCACCCAGGCA--------GTCCACCCACAGTT-CAGACCA-ATGC-CAGCCC-CCAGGACT-----------TCCCTCTTCCCTGGTCACC--GTCTTCCAACCCACTGGCCC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1853803 491 -   1987038 GGATCCACTGTCAAGTCACAGGACACCCGCCCAGGCAAGCTTGGAAAGGGAGGCCTCCGA-GAAGAG--AGGATCTGTTTAGAGGTCAAAGTGGGGCCTGGGGCTTTTAGGACGGGATGGACTTGCCTGACCCGTTCAGCGGGCAGTTGGAAAGAAAGCAGAGAGAAAACGGATTAAAGA--AAAGCC-----AGAGCTGGTGAGGCAAGCGCAAA-GCAGTGGTATGCTGC--AGCAGCTGTGGGAGGGCTGGAGA----GGGAAGGGCGCAGGTTGCGGGTGT---GGC-AAGGTTCCTGGAACACAG--GGACTGGAAGGGAAAGG------GGA------GGAA---GATAGAGGGAG---------------AAGCTGAAGCTT-CTTAGGCGGT---GCCTGGGGGCTGTGGCAGCCATCTCCACCCCACACATGCTGGCCTCTCCCAAGGCACCCAGGCA--------GTGCACCCGTAGTT-CAGACCA-ATGCTCAGCCCTCTTGGGTT-----------TCTCCCTTCTCTGGTCACCCTGTCTTCCAACCCAC-GGCTC
i cerAty1.NW_012002657v1    C 0 C 0
s otoGar3.GL873533             437608 497 -  31380117 -----------TTAGTCACAGAACAGCCGTCCAGGCAGGCTTGGAAAGGGAGGTCTCCGAGGAAGAGGAGGGATCTGGTTAGAGTTCGAAGGGGGGCCTGGGGCTCTCAGGACGGGATGGACTTGCCTGACCCGATCGGCTGGCAGTTGGAGAGAAAGCAAAGAGAAAACAGGAGAGAAAGCAAGGAG-----AGAGCTGGTAAGGCAAGCACAGCTGCCCAGCCTTGCTGCCAGGCAGTGGAGGGAAGG--GATGG----GGGAAAGATGCAGG-GGTGGGTGTGTGGGC-GAAGTTCCTGGGAAAGAG--GGGACAGACTGGAAAAG------GGAGGAAGGGGAA---GATGGAGGGAGGCACAGGAGTCATGTGGGCCAGAGCTT-CATAGATA------CCTGGAAGGGG-----------CCCCCACCATGCACACTAGCCTCTCACACATCACTCAGGCA--------GTGCACCCACAGTTCCACACTC-AGGCTCAGCCCCTTTGGGCT-----------TCCCTCTTCTCTGGTCACCCTGTCTTCCAACCCCCTGGCCC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55252803 492 +  61074082 -GAGCCACTGTCAAGTCACAGAACAGCCGTCCAGGCAGGCTTGGAAAGGGAGGTCTCCGA-GGAATAGAGGGATCTGGTTAGAGGTCGAAGGGGGGCCTGGGGCTCTCAGGACGGGACGGACTTGCCTGACCCGATCGGCTGGCAGTTGGAGAGAAAGCAAAAAGAGAACGGAGAGAAGG--AGGAAG-----AGAACTGGTAAGGCAAGGGCAGC----CAAGCCCGGTGG--GGTAGGAG-GGGAGGACAGGG------GGCGAAAACAAAGC-TGAGGGTGT--GGGC-AAGGGTTCTGGAATGGAG--GAGAGAGAAAGGGAAGGT----AGGA------GGAACTGGAGGTGGGTGG---------------GGGCCACAGCTTCCAGGGGTCTT---GGATGGAGGCCGGGGCGGCCCTCCCTCTGCCACGCACGCCGGTCTCTCATACACCAC-CAGGCA--------GTGCACCCACAGCTCCAGGCAC-ATGCTCGGCCC-CTCTGCCT-----------TCCCTCTTTTCTGGCCCCCATGTCTTCCAATGTACTGGCCC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             186233 518 +    584178 GGAGCCACTGTCAAGTCACAGAACAGCCATCCAGGCAGGCTTGAAAAGGGAGGTCTCCGAGGAATAGGAGGGGTCTGGTTAGAGGTCGAAGGGGGGCCTGGGGCTCTCAGGACGGGATGGACTTGCCTGACCCGATCGGCTGGCAGTTGGAGAGAAAGTGAAAAGGGAAGAGAGAAAAGG--GGAG-------AGAGCTGGTAAGGCAAGAGCAGC--------CAAGCTAC--GGCGGTGGTGAGAGGGGATGGGAATGGGAAGAAGACACAGG-TGCGGGTGT-GAGGC-AAAGTTTCAGGAAAAAAGATAGACAAGAAAGGGAAGATGGAGAGGA------GGAGCTGGAGATGGGCAG---------------GGGCCAGAGCTT-CACAGGGAATCTGGGGTGGAGGTTGGTTTGGCCCCTCCACCACCACGCACACCAGTCTCTCACACACCACCCAGGCA--------GTGCACCCACTGCTCCAGAACACATGCTCTGCCCCCTCTGGCTTCCCTCCTGGCTCCCTCTTCTCTGACCACCATGTCTTCCGATCCACTGGCCC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       653528 19268 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       341604 685 -   1458659 M
e chlSab2.chr29              21075958   0 -  24206276 I
e saiBol1.JH378108            5022346   0 -  54856640 C

a score=1310160.000000
s hg38.chr15_KI270850v1_alt    230726 310 +    430880 AGGGCCACCTCTTGC-TTGGAG---------------A-------------GCCCCATCCAACAGCCACCAGACCTGAT-----------AGAGAA-------GGAACACTGATTGAACCAAAATGGTGGAGCTATAA-GGGATGGCTGGCTGGAGTGAATGCC-AGAGGCCCCTCTGGGCCATCAGAAAGCCCA-GGGTCCTCTG-A-GGGACCCTGGGGAAGGCAGGGAGGGCAGGT-AGCCGGATGCCATTGGCCATAGACTTCTAATTCTAAC-AGGGGAGCCTCAACTGGTTG------GCGG-GGGGCTGCAGGTTACATAGGTGAGGCTGGGCCCTTCCTGCT-GGGAAAAGCAGAAGAGGGAGA
s panTro5.chrY               25692415 308 -  26350515 AGGGCCACCTCTTGC-TTGGAG---------------A-------------GCCCCATCCAACAGCCACCAGACCTGAT-----------AGAGAA-------GGAACACTGATTGAACCAAAATGGTGGAGCTATAA-GGGATGGCTGGCTGGAGTGAATGCC-AGAGGCTCCTCTTGGCCATCAGAAAGCCCA-GGGTCCTCTG-A-GGGAACCTGGGGAAGCCAGGGAGGGCAGGT-AGTTGGATGCCATTGGCTATAGACTTCTAAGTCTAAC---GGGAGCCTCAACTGGTTG------GCGG-GGGGCTGCAGGTTACATAGGTGTGTCTGGGCCCTTCCTGCT-GGGAAAAGCAGAGGAGGGAGA
i panTro5.chrY              C 0 C 0
s panPan2.chr15              76635443 312 +  99763055 AGGGCCACCTCTTGC-TTGGGG---------------A-------------GCCCCACCCAACAGCCACCTGGCCTGAT---------------AA-------GGAACACTGCTTGAACCAAAATGGTGAAGCTATAA-GGGATGGATGGCTGGAGTGAGTGCC-AGAGGCCCCTCT-GGTGGTGAGAATGTCCA-GGGTCCTCTGAA-GGGACCCTGGGGAAGGCAGGGAGGGCAGGT-AGCTGGATGCCACTGGCCATAGACTTATAAGTCTAAG-AGGGGAGCCTCAGCTGGTTGCGGGGTGAGG-GGGGCTGCAAGTTTCATAGCTGAGGCTGGGTCCTTCCTGCT-GGGAAAAGCAGAAGAGGGAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       329289 310 +    378907 AGGGCCACCTCTTGC-TTGGAG---------------A-------------GCCCCATCCAACAGCCACCAGACCTGAT-----------AGAGAA-------GGAACACTGATTGAACCAAAATGGTGGAGCTATAA-GGGATGGCTGGCTGGAGTGAATGCC-AGAGGCCCCTCTGGGCCATCAGAAACCCCA-GGGTCCTCTG-A-GGGACCCTGGGGAAGGCAGGGAGGGCAGGT-AGCCGGATGCCATTGGCCATAGACTTCTAAGTCTAAC-AGGGGAGCCTCAACTGGTTG------GCGG-GGGGCTGCAGGTTACATAGGTGAGGCTGGGCCCTTCCTGCT-GGGAAAAGCAGAAGAGGGAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18834723 316 - 121039945 AGGGCCACCTCTTGC-TTGGAG---------------A-------------GCCCCACCCAACAGCCACCAGACCTGAT-----------AGAGAA-------GGAACACTGCTTGAACCAAAATGGTGGAGCTATAA-GGGATGGCTGGCTGGAGTGAGCGCC-AGAGGCCCCTCTGGGTGGTCAGAAAGCCCA-GGGTCCTCTG-A-GGGACCCTGGGGAAGGCAGGGAGGGCTGGT-AGCCGCATGCCACTGGCCATAGACTTCTAAGTCTAAG-AGGGGAGCCTCAACTGGTTGGCGGTGGGGG-GGGGCTGCAGGTTGCATAGGTGAGGCTGGGCCCTTCCTGCT-GGGAAAAGCAGAAGAGGGAga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60404672 312 + 169600520 TGGGCCACCTCTTGC-TTGGGG---------------A-------------GCCCCACCCAACAGCCACCAGGCTTGTT-----------AGAGAA-------GGGGTGCTGCTTGGACCAAAATGGCGAAGCTATAA-GGGATGGATGACTGGAGTGAGCGCC-AGAGGCCCCTCTGTGTGGTCTGAAAGCCCA-GGGTCCTCTG-AGGGGACACTGGGGAAGGCAGGGAGGGCAGGC-AGCCAGATGCCACTGGCCATAGACTTATAAGTCTAAG-AGGGGAGCCTCGACTGGTTG------GTGGAGGGGCTGCAGGTTGCATAGGTGAGGCTAGGCCCTTCCTGCT-GGGAAAAGCAGAAGAGGGAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65350398 311 + 171882078 AGGGCCACCTCTTGC-TTGGGG---------------A-------------GCCCCACCCAACAGCCACCACTCCTCAT-----------AGAGAA-------GGAACACTGCTTGAAACAAAATAGTGAAGCTATAAGGGGATGGCTGGCTGGAGTGAGCACC-AGAGGTCCCTCTGGGTGGGCAGAAAGCTCA-GGGTCCTCTG-A-AGGACCCTGGGGAAGGCTGGGAGGGCAGGT-AGCTGGATGCCACCGGCCATACAGTTATAAGCCCAAA-AGGGGAGCCTCAACTGGTAG------GCAG-GGGGCTGCAGGTTGCATAGGTGACGCTGGGCCCTTTATGAT-GGGAAAAGCAGAAGAGGGAGA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1854294 313 -   1987038 TGGGCCACCTCTTGC-TTGGGG---------------A-------------GCCCCACCCAAGAGCCACCAGGCTTGTT-----------AGAGAA-------GGAGTGCTGCTTGGACCAAAATGGTGAAGCTATAA-GGGATGGATGACTAGAGTGAGCGCC-AGAGGCCCCTCTGTGTGGTCTGAAAGCCCA-GGGTCCTCTG-AGGGGACACTGGGGAAGGCAGGGAGGGCAGGC-AGCCAGATGCCACTGGCCATAGACTTATAAGTCTAAGAAGGGGAGCCTCGACTGGTTG------GTGGAGGGGCTGCACGTTGCGTAGATGAGGCTAGGCCCTTCCTGCT-GGGAAAAGCAGAAGAGGGAGA
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       342289 311 -   1458659 AGGGCCACCTCTTGC-TTGGGG---------------A-------------GCGCCACCCAACAGCCACCACTCCTCAT-----------AGAGAA-------GGAACACTGCTTGAAACAAAATAGTGAAGCTATAAGGGGATGGCTGGCTGGAGTGAGCATC-AGAGGTCCCTCTGGGTGGGCAGAAAGCTCA-GGGTCCTCTG-A-AGGACCCTGGGGAAGGCTGGGAGGGCAGGT-AGCCGGATGCCACCGGCCATACAGTTATAAGTCCAAA-AGGGGAGCCTCAACTGGTAG------GCAG-GGGGCTGCAGGTTGCATAGGTGAGGCTGGGCCCTTTATGAT-GGGAAAAGCAGAAGAGGGAGA
i manLeu1.NW_012105520v1    M 685 C 0
s otoGar3.GL873533             438105 305 -  31380117 AGGGCCACCTCTACCTTTAGGG---------------A-------------GCCCTACAC-ACAGCCACCAGGCCCAAT-----------GGAGAA-------AGAAGACTGCTTGAACCAGGAGGGTGAAGCTAACA-GAGATGG----CTGGAGGAAGGGCT-GGAGGCCCCTCTGGGCAGTAAGAAAACCTAGGGGCCCTCTG-ACAGGACTCCGGGAGAGGAAAGGAGGGCAGGT-AGCCGGATGCCAGTGGCCACAGACTTATAAGTCTAAG-AGGGGAGCCTCAGCTGGTCG---------G-GGGACTGCAGGTCGCGTAGGTGAGGCTGGGCCCTTCCTGCT-GGGAAAAGCAGAAGAGTGAGA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55253295 329 +  61074082 AGGACCAGCCCTAGT-CTCGGA---------------ATGTGGGTCCTGATGCCCCATGCCACAGCCACCAGTCCTCGTGGAGAGAGACAGGAGAA-------AGAACAGTGTTTGAACCAGGAGGGCAAAGCTAAAA------GGATGGCTGGAGGGGGCACCTGGAGGCCCCTCTGGGTGGGCAGAAAGCCCG-GAGTCCTCAG-AAGGGACCCTGGGG-AGGCAGGGAGGTCAGGCAAGCCGGATGCCAGCGGCCACAGGCTTATAAGTCTAAG-AGGGGAGCCTCAGCTGGCCG---------G-GGGACCACAGGTCGCGTAGGTGAGGCTGGGCCCTTCCTGCTGGGGAAAAGCAGAAGAGTGAGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             186751 322 +    584178 AGGGCCACCCCTAGC-CTCAGGGAGTATGGGATCACAA-------------GGCCCATGCAACAG-CACCAGGCCTGAT-----------GGAGAAAGGCAGGAGAACACTGCTTGAACT-GGAGGGCGAAGCTAAAA-GGGATGG----CTGGAGGGAGCGCT-GGAGGCCCCTCTTGGTGGTCAGAAGGCCCAGGGGTCCTCAG-AAGGGACCCTGGAG-AGGCAAGGAGGACAAGC-AGCC-GATGTCAGTGGCCACA--CTTATAAGTCTAAG-AGGGGAGCCTCAGCTGGTCG---------G-GGGACTGCAGGTCGCGTAGGTGAGGCTGGGCCCTTCCTGCTGGGGAAAAGCAGAAGAGCAAGA
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       653528 19268 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e saiBol1.JH378108            5022346   0 -  54856640 C

a score=392486.000000
s hg38.chr15_KI270850v1_alt    231036 140 +    430880 CTCCGCGGCAG-----GAAAGGGAAGTGAGCT---------------------CTCT-----------------------AGGTGGAGCTCAG---------------CTGGGCCAGCA-GCACTA--------TTGGCTGAATAGCACAGGCGACCCCTAGAAGCAACAGGCCAAGGTGCGTGAGCCTGCTGGCCAGC-AGTAGTGCTTCAGC
s panTro5.chrY               25692723 149 -  26350515 CTCCGTTGCAG-----GAAAGGGAAGTGAGCT---------------------CTCT-----------------------AGGTGGAGCTCAG---------------CTGAGCCAGCATGCACTGTGGTCCCCTTGGCTGAATAGCACTGGCGGCCCCTAGAAGCAACAGGCCAATGTGCGTGAGCCTGCTGGCCAGC-AGTAGTGCTTCAGC
i panTro5.chrY              C 0 C 0
s panPan2.chr15              76635755 149 +  99763055 GTCTGTGGCAG-----GAGAGGCAGGTGGGCT---------------------CACT-----------------------AGGCAGAGCTCAG---------------CTGGGCCAGCAGGCACTGTGGTCCCCTTGGCTGAATAGCACAGGCGACCCCTAGGAGCAACAGGCCAAGGTGCCTGAGCCCGCTGGCCGGC-GATAGTGCTTCAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       329599 148 +    378907 CTCCGTGGCAG-----GAAAGGGAAGTGAGCT---------------------CTCT-----------------------AGGCGGAGCTCAG---------------CTGGGCCAGCATGCACTGTGGTCCCCTTGGCTGAATAGCACAGGCGACCCCTAGAAGCAACAGGCCAAGGTGCGTGAGCCTGCTGGCCA-C-AGTAGTGCTTCAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60404984 149 + 169600520 GTCCATGGCAG-----GACAGGCAGGTGAGTT---------------------CACT-----------------------AGGTGGAGCTCAG---------------CTGGGCCAGCAGGCACTGTGGTCTCCTTGGCTGAATAGCACAGGCGACCTCTAGGAGCAACAGACCAAGGTGTGTGAGCCCACTGGCCAGT-GGTAATGCTTCAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65350709 149 + 171882078 GTCCGTGGCAG-----GACAGGCAGGTGGGCT---------------------CGCT-----------------------AGGCAGGATTTGG---------------CTGGGCCAGGAGGCACTGTGGTCTCCTTGGATGAATAGCACAGGAGACCCCTAGGAGCAACAGGCCAAGGTGAGTGAGCCTGCTGGTCGGC-GGTAGTGCTTCAGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1854607 149 -   1987038 GTCCATGGCAG-----GAAAGGCAGGTGAATT---------------------CACT-----------------------AGGTGGAGCTCAG---------------CTGGGCCAGCAGGCACTGTGGTCTCCTTGGCTGAATAGCACAGGCGACCTCTAGGAGCAATAGACCAAGGTGTGTGAGCCCACTGGCCAGT-GGTAATGCTTCAGT
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012105520v1       342600 149 -   1458659 GTCCGTGGCAG-----GACAGGCAGGTGGGCT---------------------CGCT-----------------------AGGCAGGATTTGG---------------CTGGGCCAGCAGGCACTGTGGTCTCCTTGGCTGAATAGCACAGGAGACCCCTAGGAGCAACAGGCCAAGGTGAGTGAGCCTGCTGGTCGGC-GGTAGTGCTTCAGC
i manLeu1.NW_012105520v1    C 0 C 0
s otoGar3.GL873533             438410 136 -  31380117 GTCAGTGGCCA-----GAGAAG--AGTGGT---------------------------------------------------GGCTGGGTTCA-----------------CAGGCCAGCAGACACTGTTGTCCCTT--GCTAGAAAGTATGGGTCAGCCTGAAGAGTAACAGGCCAAGGTGGGTGAGCTCGAGGCCTGGC-TATGGTGCTTCAAC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55253624 189 +  61074082 GTCAGCGGCAGGGACAGAGTGGCAGGTGGGTTGCTGGGCGCATGTGCGGCCCAACCA-----------------------GGGTGGGACTCAGA-AAAGCTGATTTGCCTAGATTGGTGGACACTGTCGTCCCCTTGGCTGAAAAGTGTAGGTCACCCC-AGGAGCACCAGGCCTAGGCCCGGGAGCCTGAGGGCTGGCTTACGGTGCTTCATC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             187073 190 +    584178 GTCAGTGGCAGGGGCAGAGGGGCAAATGGCTT---------------------AGCTGGGTGGATTCTGTGGCCCAGCTGGGGCAGAACTCAGAGAAAGGTGACGTGCCCAGGTCAGCAGACATGGTCGTCCAGTTGGCTGAAAAGCGTAGGTCACCCCTAGG-GCAACAG-CCAAAGTCCAGGAGCCTGCTGGCTGGT-GGTGGTGCTTCACT
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       653528 19268 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e nomLeu3.chr6               18835039   0 - 121039945 C
e saiBol1.JH378108            5022346   0 -  54856640 C

a score=1025635.000000
s hg38.chr15_KI270850v1_alt    231176 315 +    430880 AGGGGCCAGGGACCCTGCCTTCAGTCGCACGCTAGCAGCTATCATGGTACCTGGGAGGGAGGGAAGGGGGCTGTGTGTCCTTCCATGGCCTATGAAGTGTGTTGTGGGATGACC----ACGTGTATAGGACTCTCA--------------------------------GGCTTTTATCCTAGATCACCACTGG---ATTGCT-GACA-GATAGAGGACGTGGGACCGTGACTATCACCCCTAATCTGCAGTGGATTTGGCTCTTGGCACTCCC--------AGGCTGGGAGCTGGATA-CCTGCCCTGGCAGCATGACTCAGACTGCATGACAGGTACGGCG-TGTCCAGGATGATGTGCCCAGGC
s panTro5.chrY               25692872 315 -  26350515 AGGGGCCAGGGACCCTGCCTTCAGTCGCACGCTAGCAGCTATCATGGTACCTGGGAGGGAGGGAAGGGGGCTGTGTGTCCTTCCATGGCCTATGAAGTGTGTTGTGGGATGACC----GCGTGTACAGGACTCTCA--------------------------------GGCTTTTATCCTAGATCACCACTGG---ATTGCT-GACA-GATAGAGGATGTGGGACCCTGACTACCACCCCTAGTCTGCAGTGGATTTGGCTCTCGGCACTCCC--------AGGCTGGCAGCTGGATA-CCTGCCCTGGCAGCATGACTCAGACTGCATGACAGGTACGGCG-TGTCCAGGATGATGTTCCCAGGC
i panTro5.chrY              C 0 C 0
s panPan2.chr15              76635904 315 +  99763055 GGGGGCCAGGGACCCTGCCTTCAGTCACACGCTAGCAGCTGCGGTGGTACCTGGCAGGGAGGGAAGCGGGCTGTGTGTCCCTGCCTGGCCTGTGAAGTGTGTTGTGGGATGACT----GTGTGTATGGGACTCTTA--------------------------------AGGTTTTATCCTAGATCACCA-GGG---ATTGCC-AACA-GATAGAGGAGGTGGGACCCTGACTATCACCCCTCCTCTGCAGTGGGTTTGACTCTTGACACTCCC--------AGGCTGGGATCTGGATACCCTGACCTGGCAGCATGACTCAGACTGCACGACAGGTACGGCG-TGCCCAGGATGACGTTCCTAGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       329747 315 +    378907 AGGGGCCAGGGACCCTGCCTTCAGTCGCACGCTAGCAGCTATCATGGTACCTGGGAGGGAGGGAAGGGGGCTGTGTGTCCTTCCATGGCCTATGAAGTGTGTTGTGGGATGACC----GCGTGTATAGGACTCTCA--------------------------------GGCTTTTATCCTAGATCACCACTAG---ATTGCT-GACA-GATAGAGGAGGTGGGACCCTGACTATCACCCCTAATCTGCAGTGGATTTGGCTCTCGGCACTCCC--------AGGCTGGGAGCTGGATA-CCTGCCCTGGCAGCATGACTCAGGCTGCATGACAGGTACGGCG-TGCCCAGGATGATGTGCCCAGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               60405133 311 + 169600520 GGGGGCCAGGGACCGTGCCTTTGGTCACACGCTAGCAGCTATGATGGTACCTGGGAGAGAGGGAAGGGGGCTGTGTGTCCTTACCTGGCCTGTGGAGTGTGTTGTGGGATGACC----GTGTGCATGGGACTCTCA-----------------------------------------CCTAGATCGCCACTGG---AGTGCC-AACA-GATAGAGAAGGTGGGACCCTGACAATCACCCTTGCTCTGCAGTGGATTCGGCTTTCGGCACTCCCAGG----GAGGCTGGGAGCTGGATACCCTGCCCTGGCAGCTTGACTCAGACTGCACGACAAGTATGGCA-TGCCCAGGATGATGTTCCTAGGC
i rheMac8.chr7              C 0 N 0
s macFas5.chr7               65350858 314 + 171882078 GGGGGCCAGGGACCCTGTCTTCAGTC-CACACGAGCAGCTATGATGGTACCTGGGAGGGAGGGAACGGGGCTGTGTGTCCTTGCCCGGTCTGTGAAGTGTGTTGTGGGATGACC----GTGTGTATGGGACTCTCA--------------------------------GGCTTTTATCCTCGATCACCACTGG---ATTGCT-GACA-GTTGGAGGATGTGGGACCCTAACTATCATCCTTAATCTGCAGTGGATTTGGCTCTCAGCACTCCC--------AGCCTGGGAGCTGGATA-CCTGCCCTGGCAGCATGACCCAGACTGCATGACAGGTACAGCG-TGCCCAGGATGATGTGCCTAGAC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1      1854756 311 -   1987038 GGGAGCCAGGGCCCCTGCATTTGGTCACACGCTAGCAGCTATGATGGTACCTGGGAGAGGGGGAAGGGGGCTGTGTGTCCTTACCTGGCCTGTGGAGTGTGTTGTGGGATGACC----GTGTGCATGGGACTCTCA-----------------------------------------CCTAGATCGCCACTGG---AGTGCC-GACA-GATAGAGAAGGTGGGACCCTGACAATCACCCTTGCTCTGCAGTGGATTCGGCTTTCGGCACTCCCAGG----GAGGCTGGGAGCTGGATACCCTTCCCTGGCAGCTTGACTCAGACTGCACGACAAGTACGGCA-TGCCCAGGATGATGTTCCTAGGC
i cerAty1.NW_012002657v1    C 0 n 0
s manLeu1.NW_012105520v1       342749 315 -   1458659 GGGGGCCAGGGACCCTGCCTTCAGTC-CACACTAGCAGCTATGATGGTACCTGGGAGGGAGGGAAGGGGGCTGTGTGTCCCTGCCCGGTCTGTGAAGTGTGTTGTGGGATGACC----GTGTGTATGGGACTCTCA--------------------------------GGCTTTTATCCTCGATCACCACTGG---ATTGCT-GACA-GTTAGAGGATGTGGGACCCTAACTATCACCCTTAATCTGCAGTGGATTTGGCTCTCAGCACTCCC--------AGGCTGGGAGCTGGATACCCTGCCCTGGCAGCATGACCCAGACTGCATGACAGGTACAGCG-TGCCCAGGATGATGTGCCTAGAC
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378108            5022346 315 -  54856640 GGGGGCCAGGGACC-TGCATTCAGTCGCACACTGGCAGCCATGATGGCACCCGGGAGGGAGGGAAGGGAGCCGTGTGTCC-TGCCTGGCCTGTGAGGTGTGTGGTGGGATGACT----GTGTGTATGGGACTCTCC--------------------------------AGCTTTTACCCGAGATCACCACTGGATTATTACC-AGCA-GATAGAGGAGGTGGGACCCTGACTAGCACCC--GCTCTGCAGTGGATTTGGCTCTCGGCACTCCA--------AGGCCGGGAGCTGGATGCCCTGCACTGGCAGCATGACTCAGAATGCACGACAGGCACAGCG-TGCCCAGGAGGACGTTCCTGGGC
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             438546 316 -  31380117 TGGGGCCAAAGACACCATCTTCAGTCACACATGAGTA--TATG-TGACACTGATGAGGTAGGGAAGGGG---GTGTGTCCCTGTCTCGCCTGTGAGCTGTTGCATGAGCTGACA----GTGTGAACAGGACTATCCTTCCAGGCTTTCAGAAATTCTC----AACCAGAGCCTCTGCCCCCGATCACTGCTCG---ATGGCCAGGCT-GATTGAGGGGGCAGGACCCTGACCACGTCCCCTGCTCTAC---------------CAGATCACCC--------AGGTCCAGAGCTGTGTC-CCTGCCCTAGCAGCATGGCTCAGACTGGGCAACCAGTGCAACA-TGCCTGAGTTCAAGGT-------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55253813 318 +  61074082 TGGGGCAGAGGACACTGTCGTTTGTAGTGCCATCACAAGCATGACCATACC-AGGAGGGAGAGGAACAGGCTGCGTGATCCTACCTCGCCCGT------------------ACA----CTGTGGACAGGGCCCTCC-----AGCTTTCAGAAATCAGCA---AACCAGAGCCTTCGCCCCAAATTGCTGCTCA---ACTGCT-GGCACCATAGAGGAGGTGGGGCTGTGAC---CTCCTCTGCCCTATCATGGCCTCGGTTCCCAGCGCTCCT--------GAGCTGGGAGCTGGCTGCCCTGCCCCGACAGCTTGGCTCAGGTTGGACAATGAGTGTGGCACCCCCCAGGACAAAGTTCCAAG--
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             187263 341 +    584178 GGGGGCTGAGGACGCTGCCTTCAGTCACACACCCCCAGGT-TGACAATAACAAGGAAATAGGGGAAGGGGCGGTCTGTCC---------AGGTGAGGCGTGTTATGGGCCGATCGATGGTGTGCACAGAACCCTTA-----GGCTTTCAGAAATCATCAACCAACCAGTGCCGTCCCCTCAGATAACTGTTGG----TTGCT-GGCATGATAGCGGAGGAGGGACTCTGACTG---CTCCTGCCCTACAGTGGATTTGGCTCCCAGGCCTCCCAGGCTCCCAGGCTGGGAGAAGGATGTCCTGCCC-GGCAGCATGGTGTGGATTAGGGGATGGGTGTGGCA-CCCCCAAGATGAACTTCAAAGGC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       653528 19268 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e nomLeu3.chr6               18835039   0 - 121039945 C

a score=2079850.000000
s hg38.chr15_KI270850v1_alt    231491 580 +    430880 CTCTGGCCGCCT--GAGTCCAGCCCCCCACACAACCCCCTCCAAGCTCCCAGCCCCTACACCATAAACCATGAGCTCTGTGCCCTCTCTGATGGTT-----------CCACATCTGCCACCTTGGGCATGGAGCCTGTTGTAAGAGC-CCCCAGGCTCAGCCATGGAGACCTTGAGCAGTGGCACTGAGTCCCGTGGCTCACAGGG-AGCAAAGTGAGACAACCAGC-AGCA-CAAGGACAGAAAGAGGAAAGAGCAAGTCTGCAGCTCCAGAAGGGAG-GGGCAGGGAGCCTGGCTCTGAGACTCCAGGCATGCCCCCT-GTGTGGAGCTGGGGCAGC------------GGGGCGGGCAGACCATTCATGCAGCAGGCAGTGAGACTTGT----ACCTACCATGGCTGACGCTCCTCAGGGGCCACTGATAGTGATTCTGAAAGACAGCATCAAATC-ACATGGCAGGTCCCATGCATGGGTGGGGCAGGCCT-GGGGGTGG------CAGACACACGCACATGCCAGATTGTGCACACACATGCTGTGAGGCCC---------CACGG-CCCGCATGCACACTCTA--ACAGATGCCCACAAACAACACGC---ATACGTCGCC------------CTCTCCGCCAC
s panTro5.chrY               25693187 586 -  26350515 CTCTGGCCGCCT--GAGTCCAGCCCCACACACAAACCCCTCCAAGCTCCCAGCCTCCACACCATAAACCATGAGCTCTGTGCCCTCTCTGATGGTT-----------CCACATCTCCCACCTTGGGCATGAAGCCTGTTGTAAGAGC-CCCCAGGCTCAGCCATGGAGACCTTGAGCAGTGGCACTGAGTCCCGTGGCTCACAGGG-AGCAAAGTGTGACAGCCAGC-AGCA-CAAGGACAGAAAGAGGAAAGAGCAAGTCTGCAGCTCCAGAAGGGAG-GGGCAGGGAGCCTGGCTCTCAGGCTCCAGGTATGCCCCCT-GTGTGGAGCTGGGGCAGC------------GGGGCGGGCAGACCATTCATGCAGCAGGCAGCGAGACATGT----ACCTACCATGGCTGACGCTCCTCAGGGGCCACTGGTAGTGATTCTGAAAGACAGCTTCAAATC-ACATGGCAGGTCACATGCATGGGTGGGGCAGGCCT-GGGGGTGGGGG--ACACACACACGCACACACCGGAGTGTGCACACACATGCTGTGAGGCCC---------CACGG-CCCACATGCACACGCTAACACACATGCCCACAAACAACACGC---ATACGTCGCC------------CTCCCCGCCAC
i panTro5.chrY              C 0 C 0
s panPan2.chr15              76636219 603 +  99763055 CTCTAGCTGCCTCAGAGTCCAGCCGCACACACAACCCTGTCCAAGCTCCCAGCCCCTACACCATAAATCATGAGCTCTCTGCCCTCTCTGATGACTACAGAGAGCACCCATGTCTGCCAGCTTGGGCATGGAGACTGTTCCAACAGC-CCCCAGGCTCAGCCATGGAGGCCTTGGGCAGTGGCGCTGAGTCCCATGGCTTGCAGGGAAGGGAGGTGAGAGAGCCAGC-AGCA-CCAGGACAGAAAGAGGAAAGAGCAAATCTGCAGCTCCAGAAGGGAG-GGGCAGGGAGCCTGGATCTGAGGTCCCAGGTGCGCCCCC--GTGTGGAGCCGGTGCAGC------------GGGGCGGGAACACCATTCATGCAGCAGGCGGTGAGGCATGT----ACCTACCATGGCTGATGCTCCTCAGGGACCATTGATAGTGATTCTGAA----AGCATCAGATCAACATGGCAGGTCACACGCATGGGTAGGGCAGGCCT-GGGGTTGGGGGACACACACACACGCACATGCCGGGGTGTGCACACACATGCTATGAGGCCCCACAGCATGCACAG-CCGGCATGCACACGCTAACACACATGTCC----ACAACACGC---ATACGCCTCC------------TTCCCCGCCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       330062 586 +    378907 CTCTGGCCGCCT--GAGTCCAGCCCCACACACAACCCCCTCCAAGCTCCCAGCCCCCATACCATAAACCATGAGCTCTGTGCCCTCTCTGATGGTT-----------CCACATCTGCCACCTTGGGCATGGAGCCTGTTGTAAGAGC-CCCCAGGCTCAGCCGTGGAGACCTTGAGTAGTGGCCCTGAGTCCCGTGGCTCACAGGG-AGCAAAGTGAGACAGCCAAC-AGCA-CAAGGACAGAAAGAGGACAGAGCAAGTCTGCAGCTCCAGAAGGGAG-GGGCAGGGAGCCTGGCTCTGAGGCTCCAGGTATGCCCCCT-GTGTGGAGCTGGGGCAGT------------GGGAAGGGCAGACCATTCATGCAGCAGGCAGCGAGACATGT----ACCTACCATGGCTGACGCTCCTCAGGGGCCACTGATAGTGATTCTGAAAGACAGCTTCAAATC-ACATGGCAGGTCACATGCATGGGTGGGGCAGGCCT-GGGGGTGGGGG--ACACACACACGCACATGCAGGAGTGTGCACACACATGCTGTGAGGCCC---------CACGG-CCCGCATGCACACGCTAACACACATGCCCACATACAACATGC---ATACGTCACC------------CTCTCCGCCAC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              106990006 580 - 169600520 CTCTGACCGCCTCAGATTCCAGCCCCACACACAACCCCCTCCAAGCTCCCAGCCCCTACACCATAAACCACAAGCTCTGTGTCCTCTCTGATGGCT-----------CCACATCTGCCAGCTTGGGCATGGAGCCTGTTCTAAGAGC-CCCCAGGCTCAGCCATGGAGACCTGGAGCAGTGACACTGAGTCCCATGGCTCGCAGGG-AGAGAAGTGAGACAGCCAGC-AGCA-CAAAGACAGAAAGAGCAAAGAGCAAGTCTGCAGCTCCAGAAGGGAG-GGGCAGGGAGCCTGGCTCTGAAGTCCCAGGTAGGCCCCCC-ATGTGGGGCTGGGGCAGC------------GGGGCAGGCAGACCTTTCATGCAGCAGGCAGCAAAGCATGT----ACCTACCAAGGCTGACGCTCCTCAGGGAACACCGATAGTGATTCTGAAAGACAGCATCAAATC-ACATGGCAGGTCACACGCAT-GGTGGGGCA-GCCT-GAGGGTGGGGG----ACACACACGCACACGCCGGAGTGTGCACACACATGCTGTGAGGCCC---------CACTG-CCTGCATGCACACACTAACACACATGCCCACAAAAAACACGC---ATACGCTGCC------------TTCCCCG----
i rheMac8.chr7              N 0 C 0
s macFas5.chr7               65351172 580 + 171882078 CTCTGACCGCCTCAGATTCCAGCCCCACACACAACCCCCTCCAAGCTCCCAGCCCCTACACCATAAACCACGAGCTCTGTGTCCTCTCTGATGGCT-----------CCACATCTGCCAGCTTGGGCATGGAGCCTGTTCTAAGAGC-CCCCAGGCTCAGCCATGGAGACCTGGAGCAGTGACACTGAGTCCCATGGCTCGCAGGG-AGAGAAGTGAGACAGCCAGC-AGCA-CAAAGACAGAAAGAGCAAAGAGCAAGTCTGCAGCTCCAGAAGGGAG-GGGCAGGGAGCCTGGCTCTGAGGTCCCAGGTAGGCCCCCC-ATGTGGGGCTGGGGCAGC------------GGGGCAGGCAGACCTTTCATGCAGCAGGCAGCAAAGCATGT----ACCTACCAAGGCTGACGCTCCTCAGGGAACACCGATAGTGATTCTGAAAGACAGCATCAAATC-ACATGGCAGGTCACATGCAT-GGTGGGGCA-GCCT-GAGGGTGGGGG----ACACACACGCACACGCCGGAGTGTGCACACACATGCTGTGAGGCCC---------CACTG-CCTGCATGCACACACTAACACACATGCCCACAAAAAACACGC---ATACGCTGCC------------TTCCCCG----
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       343064 580 -   1458659 CTCTGACTGCCTCAGATTCCAGCCCCACACACAACCCCCTCCAAGCTCCCAGCCCCTACACCATAAACCACGAGCTCTGTGTCCTCTCTGATGGCT-----------CCACATCTGCCAGCTTGGGCATGGAGCCTGTTCTAAGAGC-CCCCAGGCTCAGCCATGGAGGCCTTGAGCAGTGACACTGAGTCCCATGGCTCGCAGGG-AGGGAGGTGAGACAGCCAGC-AGCA-CAAAGACAGAAAGAGCAAAGAGCAAGTCTGCAGCTCCAGAAGGGAG-GGGCAGGGAGCCTGGCTCTGAGGTCCCCGGTATGCCCCCC-ATGTGGGGCTGGGGCAGC------------GGGGCAGGCAGACCTTTCATGCAGCAGGCAGCAAAGCATGT----ACCTACCAAGGCTGACGCTCCTCAGGTAACACCGATAGTGATTCTGAAAGACAGCATCAAATC-ACATGGCAGGTCACACGCAT-GGTGGGGCG-GCCT-GAGGGTGGGGG----ACACACACGCACACGCCGGAGTGTGCACACACATGCTGTGAGGCCC---------CACTG-CCTGCATACACACACTAACACACATGCCCACAAAAAACACGC---ATACGCTGCC------------TTCCCCG----
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378108            5022661 553 -  54856640 -TCTGGATGCCT----------------------------CCAAGCTCCCGGCCCCGACACCATAAACCACGAGCTCTCTGCCCACTGTCATGGCTCCGGAGAGCACCCACATCTGCCAGCTTGAGCACGGAGCCTGTTCCAAGAG--CCCCAGGCTCAGCCATGGAGGCCCTGGGCAGTGGCACTGAGTGCCGAGGCTCACAGAGAAGGGAGGTGAGAGAGACAAC-AGCA-TGAGGACAGAAAAAGGAAAGAGAAAGTCTGCAGCTCCAGAAGGGAG-GCGCCGGGAGCCCAGCTCTTAGGTCCCAGGTTTGCCCCCT-GGGTGGAGCTGGTGCAGC------------GGGGCAGCCACACCATTCACACAGCAGGCGGCGAGGCGTGT----GCCTGCCATGGCTGAAGCTCCTCAGAGGTCACTGATAGTGATTCTGAAAGACAGCATGAAACCAACATGACAGCTCCCACGCATGGGTGGGGCAGGCCT------------------------GCAAACATCCAGGTGTGCACAGACACGCCGTGAGGCCA---------CATGG-CTCGCATGCACACACTAACACACGTGCCCACAAATACTACAAACGACACCCCTCC------------TTCCCCTCTAC
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             438862 566 -  31380117 CTCTGGTCACTTCTGAGTCCTGCCTCAT--------------------------------CCATAAACCACAAGTTCCCCATCCTCTCTGACAGCTCTAGAGAGCACCTATGTCTGGCAGCTTGGGTGCGGAGCCTGTCCCAAGAGC-CCCTTGGCTCAGCCATGGAGGCCTTGGGTAGTGGCACTGAGTCCCGAGGCTCACTGGA-AAGGGAG-GAGAGAGCCAGCTGGCA-TGAGGACATAGAGAAGAAAGAAGAAGTCTGGAGCTGCAGAAGGGAG-GGGC-GGGAGCCTGGCTCTGAGGT-CCAGCTGTGCCCCCCAGTGTGGAGCTGGTGCAGC------------GGGGCAA-CACACCATTCATGCAGCAAGCAGAGAGGCATGT----ACCTACCATGGCTGACGCTCCTCAGGGGTCACTGATAGTGATTCTGAAAGACAGCACGAAATCAACATGGCAGTTCACACGCACGGGTGGGGCAGGCCT-GGGGGTGGGGG--ATACGCGCACACACACGCCTGGGCGTGCACACACATGCTGTGAGGCCC---------CACGG-CCCGCATGCACACGCTAACACACATGCTCACAAACAACACAC---ATACACCTTC------------CTCCCTTGCAC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55254131 614 +  61074082 -CCTGGCTGGCT--GAGTTCAGCCCCACGCACAACCCCCTCCAAGGTTCCTGCCTCTACACCATAAACCATGAGCCCTCTGTCCTCTCTGATGGCTCCAGAGAGCACCTGTGTCTGCCAGCTCGGGCGCGGAGCCTGTCCCAAGAGCTCCCCAGGCTCAGCCATGGAGATCTTGAGCAGTGGCACTGAGTCCCGAGGCTCGCTGAG-AGGGAGGTGAGAGAGCCAGCTGGCAGCGAGGACAGAAAGAGGAAAGAATAAGTCTGGAGCTGCAGAAGGGAGAGGGAGGGGAGCCTGGCTCTGAGGTCCCAGGTGCGCCCCCCAGTGTGGAGCTGGTGCAGCGGCGGGGGGCGGGGGGCAGACACACTGTTCATGCAGCAGGCAGAGAGGCATGTATGCACCTACCGTGGCTGACGCTCCTCAGGGGTCACTGATAGTGATTCTGAAAGACAGCACGAGATCAACATGGCAGTTCACACGCACAGACAGGGCAGGCCTGGGGGGTGGGGG--TCACGCACACGCACACGCCCGGGCGTGCACACACATGCTGGGAGGCCC---------CACGGCCCCGCATGCACACACTGACACACATGCCCACAGACAACACGC---ATACACCTCC------------CCCAC------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             187604 619 +    584178 CTGTGGCCTCCTCAGAGTCAAGCCCCACACACAACCTCCTCCAAGCTCCTAGCCTCTGCATCATACACCATGAGCTCACTGTCCTCTCTGATGGCTCCAGAGAGCACCCATGTCTACCAGTTTGGGCATGGAGCCTGTCCCAAGAGCCCCCCAGGCTTAGCCAGGGAGGTCCTGGGCAGTGTCACTGAGTCCCGAGGCTCACTGGGAAGGGAGGTGAGACAGCCAGCTGGTGGCAAGGACAGAAAGAGGAAAGATTAAGTCTGGAGCTGCAGAAGGGAGAGGGAGGGGAGCCTTGTTCTGAGGCCCCAGGTATGCCCCCCAGTGTGGAGCTGGTGCAGC----------AGGGGGCAGACACACC--TCATGCAGCAGGCAGAGAGGCATGT----ACCTACCGTGGCTGACGCTCCTCAGGGGTCACTGATAGTGATTCTGAAAGACAGCACGAAATCAACATGGCAGTTCACACGCACGGATGGGGCAGGCCA-GGGGTTGGGGG--ATACGCACACGCACACGCCTGGGCGTGCACACACATGCTGTGAGGCCC---------CATGGCCCTGCATGCACACGCTAACACACATGCCCACAAACAACACGC---ATACACTCCCATTGCCCTCCATTCCCCCAACCC
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       653528 19268 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e nomLeu3.chr6               18835039   0 - 121039945 C

a score=748969.000000
s hg38.chr15_KI270850v1_alt    232071 159 +    430880 CTCCCGGTG-CCCAGCACCCTCACCGGCCGGCACGTGCCGCATGGATCTGGGGCGTGCAGCCACACGGCACACTGAAGCACATGCGTGGGCAGAGTCACAACACAGATGCTCACCCGCACACA-G-AGGCATTTGCACCAGCTCCCTGCACACTCGTGCCTG
s panTro5.chrY               25693773 159 -  26350515 CTCCCGGTG-CCCAGCACCCTCACCGGCCGGCACGTGCTGCATGGATCTGGGGCATGCAGCCACTCGGCATATGGAAGCACATGCGTGGGCAGAGTCACAACACAGATGCTTACCCACACACA-G-AGGCATTTGCACCAGCTCCCTGCACACTCCTGCCTG
i panTro5.chrY              C 0 C 0
s panPan2.chr15              76636822 159 +  99763055 CTCCCGGTA-CCCAGCACCCTCACTGGCTGGCACGTGCAGCACAGATCTGGGGTGTGCAGCCACTTGGCACACTGAAGCACACATGTGAGCAGAGTCACAACACAGAAGCTCACCCAAACACA-G-AGGCATTTGCACCAGCTCCCTGCACACTCATGCCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015946v1       330648 159 +    378907 CTCCCGGTG-CCCAGCACCCTCACTGGCCGGCACGTGCCGCATGGATCTGGGGTGTGCAGCCACTCGGCACACTGAAGCACATGCGTGGGCAGAGTCACAACACAGATGCTCACCCGCACACA-G-AGGCATTTGCACCAGCTCCCTGCACACTCGTGCCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              106990586 150 - 169600520 ----------CCCAGCACCCTCATTGGCCAGCATGTGCCACAAGGATCTGGGACATGCAGCCACTCGGCACACTGAAGCACATGCGTGGGCAGAGTCACAACACAGATGCTCGCCCGCACACA-G-AGGCATTTGCACCAGCTCCCTGCACACTCGTGCCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65351752 150 + 171882078 ----------CCCAGCACCCTCATTGGCCGGCCTGTGCCACAAGGATCTGGGACATGCAGCCACTCGGCACACTGAAGCACATGCGTGGGCAGAGTCACAACACAGATGCTCGCCCGCACACA-G-AGGCATTTGCACCAGCTCCCTGCACACTCGTGCCTG
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       343644 150 -   1458659 ----------CCCAGCACCCTCATTGGCCGGCCTGTGTCATAAGGATCTGGGACATGCAGCCACTCGGCACACTGAAGCACATGCATGGACAGAGTCACAACACAGATGCTCGCCCGCACACA-G-AGGCATTTCCATCAGCTCCCTGTACACTTGTCCCTG
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378108            5023214 159 -  54856640 CTCGTGGTG-CCCAGCACCCTCACTGGCCGGCACATGCAACACGGGTCATGGATGTGCAGCTACTCAGCACACTGAAGCACACACGTGGGCAGAGTCACAGCACAGAAGCTCACCCACACACA-G-AGGCATTTGCACCAGCTGGCTGCCCACGCGTGCCTG
i saiBol1.JH378108          C 0 N 0
s aotNan1.NW_018511953v1       672796 159 -   3745603 CTCCCAGTG-CCTGGCACCCTCACTGGCAGGCACGTGCAGCACAGATCTGGGGTGTGCAGCCACTCGGCACACTGAAGCACACACATGGGCAGTGCCACAACATAGAAGCTCACCTGCACACA-G-AGGCATTTGCACCAGCTCCCTGCACAGTCATGCCTG
i aotNan1.NW_018511953v1    I 19268 C 0
s otoGar3.GL873533             439428 149 -  31380117 CTCCCAGTG-CCCCGCACCCTCACTGGCTGGCACGTGCAGCATGGATCTGGGGCATGCAGCCACTCGGCACACTGAAGCA----------CTGAGTCACAACACAGAAGCTCTCCCGCACACA-G-AGGCATTTGCACCAGCTCCCTGCACACTCGTGGCTG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55254745 159 +  61074082 CTCCCGCTG-CCCAGCACCCTCACTGGCTGGCACGTGCAGCACGGATC-GGGGCATGCAGCCACTCGGCACATTGAAGCACACGCGTGGGCTGAGTCACGACACAGAAGCTCGCCCATACACAGG-AGGCATTTGCACCAGCTCCCTGCACATTCGTGCCTG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             188223 159 +    584178 CACCCCGTACCCCGGCACCCTC-CTGGCTGGCACGTGCAGCACAGATCTGGGGCATGCAGCCACTCAGTACACTGAAGCACACGCGTGGGCTGAGTCACAACACAGAAGCTCGCCCGCACACA-GAAGGCATTTGCACCAGCTCCCTGCACACACGT-CCTG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e nomLeu3.chr6               18835039   0 - 121039945 C

a score=568849.000000
s hg38.chr15_KI270850v1_alt    232230 181 +    430880 GCGTGCTCAGAGGACCACCCATGCTGC-TCA--GGGAGACAGGGCTTGCTCACT--AATGTCCGGCTGTCATTTCT------------------------CCACCTAAGAGCCTTCCATGGCTCCCTACTGCCTACAGCGTTGAATCCCAACAAGTCATA----CTTTT---TGGACTTTGAAGGTTCTCCACCCTGTGCCCCACCCTCCCCACAGA--
s panTro5.chrY               25693932 181 -  26350515 GCGTGCTCAGAGGACCACCCATGCTGC-TCA--GGGAGACAGGGCTTGCTCACT--AATGTCCAGCTGTCATTTCT------------------------CCACCTAAGAGCCTTCCATGGCTCCCTACTTCCTACAGCATTGAATCCCAACAAGTCATA----CTTTT---TGGACTTTGAAGGTTCTCCACCCTGTGTCCCACCCTCCCCACAGA--
i panTro5.chrY              C 0 C 0
s panPan2.chr15              76636981 204 +  99763055 GCATGCTCAGAGGACCACCGGTGCTGC-TCA--TGGAGACAGGGCTTGCTCACT--AATGTCCAGCTGTCATTTATTTACCTCAGGTCAGAGAGTCTGACCCACCTAAGAGCCTTCCATGGCTCCCTATGGCCTGCAGCATTGAGCCCCAA-AAGTCAAA----CTCTT---CAGACTTTGAAGGTTCTCCACCCTATGCCCCACCCTCCCCACAGA--
i panPan2.chr15             C 0 I 24711
s gorGor5.CYUI01015946v1       330807 181 +    378907 GCGTGCTCAGAGGACCACCCATGCTGC-TCA--GGGAGACAGGGCTTGCTCACT--AATGTCCAGCTGTCATTTCT------------------------CCACCTAAGAGCCTTCCATGGCTCCCTACTGCCTACAGCGTTGAATCCCAACAAGTCATA----CTTTT---TGGACTTTGAAGGTTCTCCACCCTGTGCCCCACCCTCCCCACAGA--
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              106990736 181 - 169600520 GTGTGCTCAGAGGACCACCCACGCTGC-TCA--TGGAGACAGGGATTGCTCACC--AATGTCCAGCTGTCATTTCT------------------------CCACCTGAGAGCCTTCCATGGCTCCCTACTGCCTACAGCACTGAACCCCAACAAGTCATA----CTCTT---CAGACTTTGAAGGTTCTCCACCGTATGCCCCACCTTCCCCACAGA--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65351902 181 + 171882078 GTGTGCTCAGAGGACCACCCACGCTGC-TCA--TGGAGACAGGGCTTGCTCACC--AATGTCCAGCTGTCATTTCT------------------------CCACCTAAGAGCCTTCCATGGCTCCCTACTGCCTACAGCACTGAACCCCAACAAGTCACA----CTCTT---CAGACTTTGAAGGTTCTCCACCCTACGCCCCACCTTCCCCACAGA--
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       343794 181 -   1458659 GTGTGCTCAGAGGACCACCTACGCTGC-TCA--TGGAGACAGGGCTTGCTCAAC--AATGTCCAGCTGTCATTTCT------------------------CCACCTAAGAGCCTTCCATGGCTCCCTACTGCCTACAGCATTGAACCCCAACAAGTCATA----CTCTT---CGGACTTTGAAGGTTCTCCACCCTATGCCCCACTTTCCCCACAGA--
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       672955 164 -   3745603 ----------TGGACCACCCATGCTGC-TCA--TGGAGACAGGGCTTGCTCACT--AATCTCCAGC---AATTTCT------------------------CCACCTAAGAGCCTTCCATGGCTCCCTACTGCCCATAGCACTGAGCCCCAACAAGTCAAA----CTCTT---CAGAC--TGAAGGTTCTCCACCCTATG-CCCACCCT-CCTACAGA--
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             439577 174 -  31380117 GCGTGCTCAGAGGACCACATGTGTTGCTTCA--TAGAAACAGCCCTTGCTTACT--AGGGTCCCACTGTCATTTCT------------------------CTGCCCCAGAGCATTCCATGACTCTCTACTACCTGCAGCATTGAGCCCCAACAAGTCAAA----CTTTTCTGCGGGCTTTAAAAGCT-----------GCCCCACTCTACCAACGGA--
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55254904 168 +  61074082 GAGTGCTCAGAGGGCCACCTGCAATGC-TCCATAAGGGACAGGACTTGCTTTCTC-AGGGTCCAGCTGTCATTTCT------------------------CTGCCCGAGAACCTTCCATGGCTCCCTAGTCCCCATAGCATTGAGTCCCA----------------------AGAATTTTTAAGGTTCTGCAGCCTGC-CCCCACTGTACCCACGGC--
i canFam3.chr9              C 0 I 11
s dasNov3.JH564958             188382 175 +    584178 GCATGCTCGGAGGGCCA-----------TAA----GGGGCAACACTTGCTTTCTTGGGGGTCCAGCTGTCCTTTCT------------------------CAGCTTGAGAGCCTTCGATGGCTCCCTGTTGCCCGCAGCACTGAGACCCAACAAATCAAAACTCCTCTG---CGGACTTTAAGGATCCCCCAACCTA--CCCCACCCTACCCAGGGCAA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e nomLeu3.chr6               18835039   0 - 121039945 C

a score=580788.000000
s hg38.chr15_KI270850v1_alt    232411 238 +    430880 GCTCTTCCTCATTCTGTCTCTGTTCCCTG-----CTTTGGCCAGTGGCTATCCGCGATGTGACCCACACT-ACACCTCTGCCCACA---------CTGCAGCTCTTTACCCAGTTACCCTCC-AGTTCCTCACCACGTATGCC-TACCTCAGTCATGCCCCGGACTGCATTGAAGCCAGGCTGCCTTGAAGAAGCTCTCCCAGACTGCCCTTTTCCCCAAGGCAGGGTCATGATTTGCCAAAGGTTTCGTGTGTG
s panTro5.chrY               25694113 238 -  26350515 GCTCTTCCTCATTCTGTCTCTGTTCCCTG-----CTTTGGCCAGTGGCTATCCTCAATGTGACCCACACT-ACACCTCTGCCCACA---------CTGCAGCTCTTTACTCAGTTACCCTCC-AGTTGCTCGCCACATATCCC-TATCTCAGTCATGCCCCAGACTGCATTGAAGCCAGGCTGCCTTGAAGAAGCTCTCCCAGACTGCCCTTTTCCCCAAGGCAGGGTCATGATTTGCCAAAGGTTTCGTGTGTG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       330988 238 +    378907 GCTCTTCCTCATTCTGTCTCTGTTCCCTG-----CTTTGGCCAGTGGCTATCCTCAATGTGACCCACACT-ACACCTCTGCCCACA---------CTGCAGCTCTTTACCCAGTGACCCTCC-AGTTCCTCACCACGTATGCC-TATCTCAGTCATGCCCCGGACTGCATTGAAGCCAGGCTGCCTTGAAGAAGCTCTCCCAGACTGCCCTTTTCCCCAAGGCAGGGTCATGATTTGCCAAAGGTTTCGTGTGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              106990917 236 - 169600520 GCTCTTCCTCATTCTGTCTGTGTTCCCTG-----CTTTGGCCGGGGGCTATCCTCGATGCGACCCACACT-ACACCTCTGCCCATG-----------GCAGCTTTTTACCCAGTTATCCTCC-AATTCCTCACCACATAAGCC-TATCTCAGTCATGCCCCGGACTGCATTGAAGCCAGCCTGCCTTGAAGAAGCTCTCCCAGACTGCCCTTTTCCCCAAGGTAGGGTCAGGATTTGTCAAATGTTTAGCGTGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65352083 236 + 171882078 GCTCTTCCTCATTCTGTCTGTGTTCCCTG-----CTTTGGCCAGGGGCTATCCTCGATGCGACCCACACT-ACACCTCTGCCCATG-----------GCAGCTTTTTACCCAGTTATCCTCC-AATTCCTCACCACATAAGCC-TATCTCAGTCATGCCCCGGACTGCATTGAAGCCAGCCTGCCTTGAAGAAGCTCTCCCAGACTGCCCTTTTCCCCAAGGTAAGGTCAGGATTTGTCAAATGTTTAGCGTGTG
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       343975 236 -   1458659 GCTCTTCCTCATTCTGTCTCTGTTCCCTG-----CTTTGGCCAGGGGCTATCCTCGATGTGACCCACACT-ACACCTCTGCCCATG-----------GCAGCTTTTTACCCAGTTATCCTCC-AATTCCTCACCACGTAAGCC-TATCTCAGTCATGCCCCGGACTTCACTGAAGCCAGCCTGCCTTGAAGAAGCTCTCCCAGACTGCCCTTTTCCCCAAGGCAGGGTCATGATTTGTCAAATGTTTAGTGTGTG
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       673119 243 -   3745603 GCTCTTCCTCATTCTGTCTCTGTTCCCTG-----CTTTGGCCAGTGGCTGTCCTTGGTGCAGCCCACACT-ACACCTCTGCCCACACTGCCCACACTGCAGCTCTTTACCCAGATACCCTCC-AATTTCTCGCCATGTAAGC-----CTCAGTCATGCCCCGGACCACAGTGAAGTCAGGCTGCCTTGAAGAAGCTCTCCCAGACTGCTCTTTTCCCCAAGGCAGGGCCATGAGTTGCCAAATGTCTCCTGGGTG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873533             439751 234 -  31380117 ACTCTTCCTCATTCCATTTACA--CCCTG-----CTCTGGCTGGCGGCTCTCCTCAGTGCAGCCTACACT-ACTCTTTTGCCTACA---------CTGCAGCCCACTACCCACATGCCCTCCTGAATCCTGTCCACCTGAGCCTTATCTCAATCACGTCCTAGAACTCATTGAAGACAGGGAG----GAAGAAGCTCCTCAAGACTGCTCTCTTCCCTAAGGCAGGGCCATAACTTGCTCAATGTTTCCCACGTG
i otoGar3.GL873533          C 0 I 593
s canFam3.chr9               55255083 230 +  61074082 ATTCTTCCTCATTCTATCTGCA--CTCTT-----CTCTGGCCAGTGGCTCTCCTCAATGCATCCCAAGCT-AAACCTTTGCCTTCA---------TTGCTGCTCCATACCGACG---CCCCT-GACTCCTCATCACCTGAGTCTTATCTCAATCAGCCCCCAGACCTCCCCTAGGTCAATCTGTCTTGAAGCA----TCCCAGACTGTTCTCTTCCCCGAGGCAAGGCGATGACTTGCCAAGCATTTCCTGTATG
i canFam3.chr9              I 11 C 0
s dasNov3.JH564958             188557 217 +    584178 CCTCCCTCTTATTCCTCCTTGCTCTCCTGGTCTCCTCTGGCTGGCGGCTCTTCTCCATGAAGCCCACATGAAAACCTTTTCCCAGG---------CTGCTGCTCCCTGCC-------CCTCC-T--------------------CACCTTCATCATCTACCAGACCTCAGGGAAGTCAATTTGCTTTTAAGAAGCACCATCAGATTGCTCCCTTCTTCAAGGCAAGGCTG-GACTCAGCAAAACTTTCCAGTGTG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e nomLeu3.chr6               18835039   0 - 121039945 C

a score=518323.000000
s hg38.chr15_KI270850v1_alt    232649 185 +    430880 TTAGCAAGACTGGAGTCGGAGCAGGCGTCAAACTTTA--CA--TCCCATATGTCACACCTCACCATAGATCTGGG-----TGCCAAATAGCCTGAAGAGTCTGAACTCACGTTGGAAGTTAGCAAAGTGCTCCTACAGCCGCAtctgcagtt----------------aacatag---------tatccctatggccactgtctcccttgatccccaca
s panTro5.chrY               25694351 185 -  26350515 TCAGCAAGACTGGAGTCAGAGCAGGCATCAAACTTTA--CA--TCCCATATATCACTCCTCACCATAGATCTGGG-----TGCCAAATAGCCTGAAGAGTCTGAACTCACATTGGAATTTAGCAAAGTGCTCCtacagccacatctgcagtt----------------aacatag---------tatccctatggccactgtctcccttgatccccaca
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       331226 185 +    378907 TTAGCAAGCCTGGAGTCAGAGCAGGCATCAAACTTTA--CA--TCCCATATGTCACACCTCACCATAGATCTGGG-----TGCCAAATAGCCTGAAGAGTCTGAACTCACGTTGGAAGTTAGCAAAGTGCTCCTACAGCCGCAtctgcagtt----------------aacatag---------tatccctatggccactgtctcccttgatccccaca
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              106991153 185 - 169600520 TTAGCAAGACTGGAGTCGGAGCAGGCATCAAACCTTA--CA--TCCCACATGTCACACCTCACCACAGACCTGGG-----TGCCAAATAGCTTGAAGAGTCTGAACTCACGTTGGCCGTTAGCAAAGGGCCCCTATGGCTGCAtctgcagtt----------------aacatag---------catctctatggccactgtctccctggatctccaca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65352319 185 + 171882078 TTAGCAAGACTGGAGTCGGAGCAGGCAtcaaacctta--ca--tcccacatgtcacacctcaccacacacctGGG-----TGCCAAATAGCTTGAAGAGTCTGAACTCACGTTGGCAGTTAGCAAAGGGCTCCTATGGCTGCAtctgcagtt----------------aacatag---------catccctatggccactgcctcccgggatctccaca
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       344211 185 -   1458659 TTAGCAAGACTGGAGTCGGAGCAGGCATCAAACCTTA--CA--TCCCACATGTCACACCTCACCATAGACCTGGG-----TGCCAAATAGCCTGAAGAGTCTGAACTCACGTTGGCAGTTAGCAAAGTGCTCCTACGGCTGCAtctgcagtt----------------aatatag---------catttctatggccactgcctccctggatctccaca
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       673362 185 -   3745603 TCAGTGAGACTGGAGTTGGAGCAGGCATCAAACCTTA--CC--TCCCATATATCACACCTCACCATAGACCTGGG-----CGCCAAATACCCTGAGGAGTCTGAACTCACATTGGCAGTTAGCACAGTGCCCCTACGGCTGCATCTGCAGTT----------------AACACAG---------GATCCCTGTGGCCACTGTCTGCCTTGATCCCCACA
i aotNan1.NW_018511953v1    C 0 I 10557
s otoGar3.GL873533             440578 183 -  31380117 TTAGCAAGACTGAAGTTAGAGCATGTACCAGGTCTTA--TG--GTTC------TATACCTCACCATAGACTTGGACATGTTGAATAATATCCTTAAGAGTCTAAA-TCACATTAGCAGTTAGCAGAGTGCttctctagccacatctgcagtt----------------aacacaa---------catccctatagccactgtctcccttgattcccaca
i otoGar3.GL873533          I 593 C 0
s canFam3.chr9               55255313 202 +  61074082 TTAGTGAGACTGGAGTTAGAGCAGGTGCCAAATCTTCCTCT--TCCCATATGTCACACCTGGGCA---------------TGTCAAATACCCTTAAGAATCTCGACTCACAAGAGAAGTTAGCAAAGTGCTCCTATAGCCACATCTGCAGTTTGTGGCTACAGTCTGAACTGTAGAACTGCAGACAGttctacagtcactgtctcccttgatcctcaca
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             188774 183 +    584178 CTAGCAAGACTGGAGCTAGAGCAGGTACCAGATCTTG--CAGTTCCCTTATATCGCGCTT------AGACCAGGGCAGG-TGT-AAATAGCCTTAGTAATCTGAACTCACGTTGGCAGTTAGCAAAGT-CTCCtacagccacatctgcagct----------------aatgcag---------cacccctatagccattgtccaccttgattcccaca
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e nomLeu3.chr6               18835039   0 - 121039945 C

a score=257776.000000
s hg38.chr15_KI270850v1_alt    232834 109 +    430880 gccatcctaggagaaaggcagaa-------cgtcatttgctagaagggatgctgaggctctgggagggaaagggacttgcctaaagccccaGGGTGAAGCAGCATCTCTGGACTCT
s panTro5.chrY               25694536 109 -  26350515 gccatcctaggagaaaggcagaa-------cgtcatttgctagaagggatgctgaggctctgggagggaaagggacttgcctaaagccccagggtgaagcagcatctctggactct
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       331411 109 +    378907 gccatcctaggagaaaggcagaa-------cgtcatttgctagaagggatgctgaggctctgggagggaaagggacttgcctaaagccccaGGGTGAAGCAGCATCTCTGGACTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              106991338 112 - 169600520 gccatcctaggagaaaggcagaacat----catcatttgatagaagggatactgaagctctgggaggaaaagggacttgcctaaagccccaggatgaagcagcaaatctggactct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65352504 112 + 171882078 gccatcctaggagaaaggcagaacat----catcatttgatagaagggatactgaagctctgggaggaaaagggacttgcctaaagccccaggatgaagcagcaaatctggactcT
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       344396 112 -   1458659 gccatcctaggagaaaggcagaacat----catcatttgatagaagggatactggagctctgggaggaaaggggacttgcctaaagccccaggatgaagcagcaaatctggactct
i manLeu1.NW_012105520v1    C 0 C 0
s otoGar3.GL873533             440761 108 -  31380117 -ccaacctgggagaaagacagaa-------tgttatttgggagaagggaaagtgaaaccctaggaggaaaaataacttgcctaagtgccctgagtgaaccagcatctttagactct
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55255515 115 +  61074082 ccaaccctgggagaaaggcagaatgttaaatatcatgtggtagaagggaaactaaggccctggaagagaaagtgacttgccgaaag-cccagggtgaaccagaacatctggactcc
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             188957 110 +    584178 ctaaccctgggagaaaggtagaacat----tatcatttggtagaatgaaaactgaggccc--agaagggaagtgatttgcctaaggacccaaggtaaaccagcatctctggactcc
i dasNov3.JH564958          C 0 C 0
e aotNan1.NW_018511953v1       673547 10557 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e nomLeu3.chr6               18835039   0 - 121039945 C

a score=7425.000000
s hg38.chr15_KI270850v1_alt    232943 2 +    430880 CA
s panTro5.chrY               25694645 2 -  26350515 ca
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       331520 2 +    378907 CA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              106991450 2 - 169600520 ca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65352616 2 + 171882078 CA
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       344508 2 -   1458659 ca
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       684104 2 -   3745603 CA
i aotNan1.NW_018511953v1    I 10557 C 0
s otoGar3.GL873533             440869 2 -  31380117 ca
i otoGar3.GL873533          C 0 T 30596
s canFam3.chr9               55255630 1 +  61074082 -a
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958             189067 2 +    584178 ca
i dasNov3.JH564958          C 0 T 22252
e calJac3.chr10             113857898 2596 - 132174527 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1855067 0 -   1987038 I
e nomLeu3.chr6               18835039 0 - 121039945 C

a score=890.000000
s hg38.chr15_KI270850v1_alt    232945 1 +    430880 T
s panTro5.chrY               25694647 1 -  26350515 t
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       331522 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              106991452 1 - 169600520 c
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65352618 1 + 171882078 C
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       344510 1 -   1458659 c
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       684106 1 -   3745603 T
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6716675 1 -  36342412 C
i otoGar3.GL873530          T 68799 C 0
s canFam3.chr9               55255632 1 +  61074082 t
i canFam3.chr9              I 1 T 21040
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1855067 0 -   1987038 I
e nomLeu3.chr6               18835039 0 - 121039945 C

a score=564115.000000
s hg38.chr15_KI270850v1_alt    232946 278 +    430880 AGACAGCCTAGAGCTGCCAGCACTCCCTTAGGATCTGTGCCCTCAGGCCTGGCTTAATTTTTTCCTCTGCAAAGAGCCATCTGTAGGGCCAGAGGCTGGCAA-----AGCCTGACTCATTACTGGACGCCAGTTCCTTTGCCTGACATTCAGTGATTTCTGCCTTACCCTGGGGTTTTATGTTGCTTGTCTCAACACTGTCACTTCTCATTCCTCCACAAGTTGAATTGCTCACTCCAGCCACTTGAAGCATGCTCTTCTTAACACAGTTAGCTCTAGGCACA
s panTro5.chrY               25694648 274 -  26350515 ----agcctagagctgccagcattcccttaggatctgtgcccttGGGCCTGGCTTAATTTTTTCCTCTGCAAAGAGCCATCTGTAGGGCTAGAGGCTGGCAA-----AGCCTGACTCATTACTGGACGCCAGTTCCTTTGCTTGACTTTCAGTGATTTCTACCTTACCCTCGGGTTTTATGTTGCTTGTCTCAACACTATCACTTCTCATTCCTCCACAAGTTGAATTGCTCACTCCAGCCACTTGAAGCATGCTGTTCTTAACACAGTTAGCTCTAGGCACA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       331523 278 +    378907 AGACAGCCTAGAGCTGCCAGCATTCCCTTAGGATCTGTGCCCTCGGGCCTGGCTTAATTTTTTCCTCTGCAAAGAGCCATCTGTAGGGCCAGAGGCTGGCAA-----AGCCTGACTCATTACTGGACGCCAGTTCCTCTGCCTGACTTTCAGTGATTTCTACCTTACCCTGGGGTTTTATGTTGCTTGTCTCAACACTGTCACTTCTCATTCCTCCACAAGTTGAATTGCTCACTCCAGCCACTTGAAGCATGCTCTTCTTAACACAGTTAGCTCCAGGCACA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              106991453 277 - 169600520 agacagcccagagctgccggcatttccttacaatctgcgccctcGGGTCTGACTTAATTTTTTCCTCTCCAAAGGGCCACGTGTAGGGCCAGAGGTTGGCAA-----AGCCTGACTCATTTCTGGATGCCAGTTCCTTTGCCTGACTTTCAGTGATTCCTACCTTACCCT-GGGTTTTGTGTTTCTTGTCTCAACACTATCATTTCTCATTCCTCCACAAGTTGAACTGCTCACTCCAGCCACCTGAAGCATGCTCTTCTTGACACAGTTAACTCTAGGCACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65352619 277 + 171882078 AGACAGCCCAGAGCTGCCGGCATTTCCTTACAATCTGCGCCCTCGGGTCTGACTTAATTTTTTCCTCTCCAAAGGGCCACGTGTAGGGCCAGAGGTTGGCAA-----AGCCTGACTCATTTCTGGATGCCAGTTCCTTTGCCTGACTTTCAGTGATTCCTACCTTACCCT-GGGTTTTGTGTTTCTTGTCTCAACACTATCATTTCTCATTCCTCCACAAGTTGAACTGCTCACTCCAGCCACCTGAAGCATGCTCTTCTTGACACAGTTAACTCTAGGCACA
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       344511 277 -   1458659 agacagcccagagctgccggcattccctcaggatctgtgccctCGGGTCTGACTTAATTTTTTCCTCTCCAAAGAGCCATCTGTAGGGCCAGAGGCTGGCAA-----AGCCTGACTCATCACTGGATGCCAGTTCCTTTGCCTGACTTTCAGTGATTCCTACCTTACCCT-GGGTTTTGTGTTTCTTGTCTCTACACTATCATTTCTCATTCCTCCACAGGTTGAACTGCTCACTGCAGCCACCTGAAGCATGCTCTTCTTGACACAGTTAGCTCTAGGCACA
i manLeu1.NW_012105520v1    C 0 I 1082
s aotNan1.NW_018511953v1       684107 278 -   3745603 AGATAGCCTAGAGCTGCCAGCAGTCCCTTAGGATCTGTGGCCTTAGGCCCAGCTGAATTTTTTCCTCTCCAAAGAGCTGTCTGTAGGGCCAGAGGCCAGCAA-----AGCCTAACTCATTACTGGACGCCAGTTCCTTTGCCTGACTTTCAGTGATTCCTACCTTACCCTGGGGTTTTATGCTTCCTGTCTTAACACTATCATTTCTCATTTCTCCACAAGTTGAATTGCTCACTCCAGCCAATTGAAGCATGCTCTTCTTGACACAGATAGCTCTAGGCACA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6716676 278 -  36342412 AGAGAGCCTAGAGCTGCAGGCCGTCCCTTAGGATCTGTGGCCTCAGGCCTG-TTGAA---TGTCCTCTCCAAAGAGCCATCTGTAGGACCAGCAGATGGCCGGTTTTGTCCTAACTCATTACCAGACCCTAATTCCTTTTCCCGACATTCAGAGATTCCCTGCATCCCCTGGGTGTTTCTTCTCTTTATTCCAACACTCTCATTTCTCATTCTTCC-CCGGCTGGACTGCTCCCTCCAGCCTAGTGAAGCGTGCTCTTCATGACATAGACAGCTTTCGGCATG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e nomLeu3.chr6               18835039   0 - 121039945 C

a score=13347.000000
s hg38.chr15_KI270850v1_alt    233224 7 +    430880 TGGTTGG
s panTro5.chrY               25694922 7 -  26350515 TGGTTGG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       331801 7 +    378907 TGGTTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              106991730 7 - 169600520 TGGTTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65352896 7 + 171882078 TGGTTGG
i macFas5.chr7              C 0 C 0
s aotNan1.NW_018511953v1       684385 7 -   3745603 TGATTGG
i aotNan1.NW_018511953v1    C 0 I 10
s otoGar3.GL873530            6716954 7 -  36342412 TGGTTGG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       344788 1082 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1855067 0 -   1987038 I
e nomLeu3.chr6               18835039 0 - 121039945 C

a score=11333.000000
s hg38.chr15_KI270850v1_alt    233231 20 +    430880 TGCTAAAAAGG----AAAAAAAAA
s panTro5.chrY               25694929 22 -  26350515 TGCTAAAAAGG--AAAAAAAAAAA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       331808 24 +    378907 TGCTAAAAAGGAAAAAAAAAAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              106991737 14 - 169600520 TGCTTAAAAGA----------AAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65352903 14 + 171882078 TGCTTAAAAGA----------AAA
i macFas5.chr7              C 0 C 0
s otoGar3.GL873530            6716961 18 -  36342412 TGCTCAAAAGA------AAAAAAA
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1       684392 10 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       344788 1082 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e nomLeu3.chr6               18835039  0 - 121039945 C

a score=378689.000000
s hg38.chr15_KI270850v1_alt    233251 284 +    430880 GAAGAACGTTATGTCAATTTCATTGATTAACAAAAGCGATGGCTCCACTGCAAAGCAAAGTTGACACT-CCTGGGTCTCTGAGTTCAAGAGCC-TTTAGAAAAATGGCTCTGAGCTAAAACATGATCATGCACGCATATGCATCTGTCTCGGTCTGATGAGATAATCTGGATACTTGCTTGTTATCCTTGAGCATTTTCCTGCCTCATTAATGTATGTGTAGCCACCACAATAATAATCATAGCTAATAATGGCTACAGCTGAGGGCTTTCCTGAACCAGGCAGTG
s panTro5.chrY               25694951 276 -  26350515 AAAGAGTGTTATGTCAATTTCATTGATTAACAAAAGCGATGGCTCCACTACAAAGCAAAGTTGATACT-CCTGG--------GTTCAAGAGCCTTTTAGACAAATGGCTCTGAGCTAAAACATGATCATGCACTCATATGCATCTGTCTCGGTCTGATGAGATAATCTGGATACTTGGTGGTTATCCTTGAGCATTTTCCTGCCTCATTAATGCGTGTGTAGCCAGCACAATAATAATAATAGCTAATAATGGCTACAGCTGAGGGCTTTCCTGAACCAGGC-GTG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       331832 285 +    378907 GAAGAGCGTTATGTCAATTTCATTGATTAACAAAAGCGATGGCTCCACTGCAAAGCAAAGTTGATCCT-CCTGGGCCTCTGAGTTCAAGAGCCTTTTAGACAAATGGCTCTGAGCTAAAACATGAGCATGCACGCATATGCATCTGTCTCGGTCTGATGAGATAATCTGGATACTTGGTTGTTATCCTTGAGCATTTTCCTGCCTCATTAATGCATGTGTAGCCAGCACAATAATAATCATAGCTAATAATGGCTACAGCTGAGGGCTTTCCTGAACCAGGCAGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              106991751 284 - 169600520 AAAGAGCGTTATGTCAATTTCATTGATTAACAAAACTGATGGTTCCACTACAAAGTAAAGTAGATACTGCCTGGGCCTCTGAGTTCAACAGCCTTTTAGACAAATGGCTCCGAGCTAAAACATGAGCATGCATATATATGTATCTGTCTCGGTCTGATGAGATAATCTGGATGCTTAGTTGTTATCCTTGAGCATTTTCCTGCCTCATTAATGCATGTGTAGCCAGCACAACAATAATG--TGCTAATAATGGCTAAAGCTGAGGGCTTTCCTGAGCCAGGCAGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65352917 284 + 171882078 AAAGAGCGTTATGTCAATTTCATTGATTAACAAAACTGATGGTTCCACTACAAAGTAAAGTAGATACTGCCTGGGCCTCTGAGTTCAACAGCCTTTTAGACAAATGGCTCTGAGCTAAAACATGAGCATGCATGTATATGTATCTGTCTCGGTCTGATGAGATAATCTGGATGCTTAGTTGTTATCCTTGAGCATTTTCCTGCCTCATTAATGCATGTGTAGCCAGCACAACAATAATG--TGCTAATAATGGCTAAAGCTGAGGGCTTTCCTGAGCCAGGCAGTG
i macFas5.chr7              C 0 C 0
s aotNan1.NW_018511953v1       684402 286 -   3745603 GAAGAGCATTCTGTCAATTTCATTGATCTACAAAAGTGATGGCTCCACTGCAAAGTAAACTTGATACTGCCTGAGCCTCTGAGTTCAAGAGCCTTCTAGACAAAGGGCTTTGAGCTGAAACACGAGCATGCACACGTATGCATCTCTCTCGGTCTGATGAGATAATGGGGATACTTGGTTGTTACCCTTGAGCATTTTCTTGTCTCATTAATGCACATGTAGCCAGCACAATTGTAATCATAGCTAATAATAGTTAAAGCTGAGGACCTTCCTGAGCCAGGCAGTG
i aotNan1.NW_018511953v1    I 10 I 3
s otoGar3.GL873530            6716979 260 -  36342412 CGAGGGCATTATGTCAATTTCATTCATCAGCAGAAAAGATGGCTCCACTGTGCAGT-AACTGGCTACTGCCTGGGCCTCTGAGTTTAGG----------------GGCTTTGAACTAAAGCACAGGTATAAGCACACACGCGCCTCTC-CTATGTGCTGAGGAAAT--GAGCGCTCCGTGGTTGGGTGTGAGCATTTTCCTAGCTCATTAACGCACACGCAGTAGGCGTGGTGACAATCAGAGGGAATAACGGT------TGAGGACTTCCCTGACCCAGGCAGTG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       344788 1082 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e nomLeu3.chr6               18835039   0 - 121039945 C

a score=33708.000000
s hg38.chr15_KI270850v1_alt    233535 63 +    430880 GT--------------------TTTAAAAACTTTAACCCCTAAAGCTGAGGACTTTCCTAAGCTAGATAGTGGCTTTGAAAAC
s panTro5.chrY               25695227 63 -  26350515 GT--------------------TTTAAAAACTTTAACCCCTAAAGCTGAGGACTTTCCTAAGTTAGATAGTGGCTTTGAAAAC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       332117 63 +    378907 GT--------------------TTTAAAAACTTTTACCCCTAAAGCTGAGGACTTCCCTAAGCTAGATAGTGGCTTTGAAAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              106992035 83 - 169600520 GCTTGAAACACTTTAAAGTGGCCTTTAAAACTTTAACCCCTAAAGCTGAGGACTTTCCTGAGCCAGATAGTGGCTGTAAAAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65353201 82 + 171882078 GC-TGAAACACTTTAAAGTGGCCTTTAAAACTTTAACCCCTAAAGCTGAGGACTTTCCTGAGCCAGATAGTGGCTGTAAAAAC
i macFas5.chr7              C 0 C 0
s otoGar3.GL873530            6717239  6 -  36342412 --------------------------------------------------------------------------TGTGTG---
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1       684688  3 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       344788 1082 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e nomLeu3.chr6               18835039  0 - 121039945 C

a score=624294.000000
s hg38.chr15_KI270850v1_alt    233598 457 +    430880 TTTAAAGTTTTCACATAG--ACTGTCACTGAATAATTTCTGTTTTTCAGATCAAGAAACTGAGACTTACTATCATATTTGGGATTAAGCT--------------------------------------------------------------------aaaaaaaaaaaaaaagaaaCagaggctgaacgc-g----tcaagtatttcacagccagcagg-----aaatcagaacttgaacccaggcagtctagccctgggatcctttcc----ccttacccattatCCAGTGTTGGCTACACAAAACTAATGAGTACATATTTTCAACTATAG-TTTAAGTGGGTGACATATTTTTCACTATATTTTATGTAGGTGACTTTCAGTTTGGGGGTATTCTACTTACACAATCTATTGAGCTGGATATTAACTGAGAGCAAACAGAAACTAATGAACTCTGAAAAACATAAAACATGAGCAACATGACATCACTGCAAGAGACAAAACAGCACATAGCCTTCTTGTGACTGTAT-TTTGCTGACA
s panTro5.chrY               25695290 473 -  26350515 TTTAAAGTTTTCACATAG--ACTGTCATTGAATAATTTCTGTTTTTCAGATCAAGAAACTGAGACTTACTATCACATTTGGGATTAAGCTaaacaaa------------------------------------------------------aaaaaaaaaaaaaaaaagaaaagaaaCagaggctgaacgctc----tcaagtatttcacagccagcagg-----aaatcagaacttgaacccaggcagtctagccctgggatcctttgc----ccttacccattatCCAGTGTTGGCTACACAAAACTAATGAGTACATATTTTCAACTACAGTTTtaagtgggtgacatatttttcactatattttatgtaggtgactttcagtttgggggtattctacttacacaatctattgagctggatattaactgagagcaaacagaaactaatgaactctgaaaaacataaaacatgagcaacatgacgtcactgcaagagacaaaacagcacatagccttcttgtgactgtat-tttgctgacA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       332180 467 +    378907 TTTAAAGTTTTCACATAG--ACTGTCATTGAATAATTTCTGTTTTTCAGATCAAGAAACTGAGACTTACTATCACATTTGGGATTAAGCT---------------------------------------------------------------aaaaaaaaaaaaagagaaaagaaaCAGAGGCTGAACGCTG----TCAAGTATTTcacagccagcagg-----aaatcggaacttgaacccaggcagtctagccctgggatcctgtgcccttccttacccattatCCAGTGTTGGCTACACAAAACTAATGAGTACATATTTTCaactatag-tttaagtgggtgacatatttttcactatattttatgtaggtgactttcagtttgggggtattctacttacacaatctgttgagctggatattaactgagagcaaacagaaactaatgaactctgaaaaacataaaacatgaacaacatgacgtcactgcaagagacaaaacagcacatagccttcttgtgactgtat-tttgctgacA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              106992118 460 - 169600520 --TAAAGTTTTTACATAG--ACTCTCACTGAATAATTTCTGTTTTTCAGATCAAGAAACTGAGACTTACTATCACATTTGGGATTAAGTT----------------------------------------------------------------------AAAAAAaaattaacaaattgaggcttaaagttg----tcaagcatttcaaagccagcaagtggctaaatcagaacttgaacccaggcagtctagccctgggatcctgtgc----ccttacccagtatCCAGTGTTGGCTACACAAAACTAACGAGTACATGTTTTCaactatac-tttaagtgggtgacatatttttcactatattttacgtaggtgactttcagtttgggagtattctacttacacaatctattgagctggatattaactgagaacaaacagaaactaatgaactctgaaaaacataaaaggtgagcaacatgatgtcactgcaaaagACAAAACAGCCCATAGTCTTTTGGTGACTGTATCTTTGCTGACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65353283 459 + 171882078 --TAAAGTTTTTACATAG--ACTCTCATTGAATAATTTCTGTTTTTCAGATCAAGAAACTGAGACTTACTATCACATTTGGGATTAAGTT----------------------------------------------------------------------AAAaaaaaattaacaaattgaggcttaaagttg----tcaagcatttcaaagccagcaagtggctaaatcagaacttgaacccaggaagtctagccctgggatcctgtgc----ccttacccagtatCCAGTGTTGGCTACACAAAACTAATGAGTACATGTTTTCAACTATAC-TTTAAGTGGGTGACATATTTTTCACTATATTTTATGTAGGTGACTTTCAGTTTGGGAGTATTCTACTTACACAATCTATTGAGCTGGATATTAACTGAGAACAAACAGAAACTAATGAACTCTGAAAAACATAAAAGGTGAGCAACATGATGTCACTGCAAAAGACAAAACAGCCCATAGTCTTTTGGTGACTGTAT-TTTGCTGACA
i macFas5.chr7              C 0 C 0
s aotNan1.NW_018511953v1       684691 528 -   3745603 TTTAAAGTTTTCACATAG--ACTGTCATTGAATAATTTCTATTTTTCAGATCAAGAAACTGAG----GCTATCACCTTTGGGATGAagaaaaagaaagagagagagaaagagagaaagaGaggaaggaaagaaggaaggaaggaaggaaggaaggaaaaaggaaggagggaaAgaaactgaggcttaaagctgtatttcaagcatttcacagcctgcaagtggctaagttggaacttgaacccaggcagtctcgctctgggatcctgtgc----ccttacccattatCCAGTGTTGGCTACAAAAAATTAATGTGTACACATTTTCAACTGTAT-TTTAAGTGGGTGACATA-ttttaactatattttaagtgggtgactttcagtttgggggtattctacttacatagtctattgagctggatattaaccgagaacaaaaagaaactaatgaactctgaaaaacataaaacatgagcaacatga--tcactgcaaaagacaaaacagcacatagccttcttgtgaatgtgt-tttgctgaca
i aotNan1.NW_018511953v1    I 3 I 25940
s otoGar3.GL873530            6717245 378 -  36342412 --TAAAGTTTTCATAtaggtgctctcatttaataatttctatttttcaaat----------------------------------------------------------------------------------------------------------------------gaaataaagtgagatttaaagctg----ttaagtatttcacaggtagcaactggcagagtcagcatttgaacccaggcagtccagctccaagctccagtgc----ccttagcc---atccagtgtcagccacacAAAAAGAACATGCGCATATTTCCAACTGTAT-TTTAAGTG------------------------------GGTAAATTTGAGTTTGGGAGTAATCTGCTGATGCAATCCATGGAGCTGGATATTAAATGAGAGCAAATAAAAACTGATGAACTCTGAAAACCATGAAACATGATCAACACGATGTCGCTGCAAGAGACAAAACTGCAC--CGCTCCCTTATGAATGTAT-TCTGCTGGCA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       344788 1082 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e nomLeu3.chr6               18835039   0 - 121039945 C

a score=60347.000000
s hg38.chr15_KI270850v1_alt    234055 64 +    430880 GTCCATGAGATGAT----AGCCTGAACTCAGCAGTGCTGTTCCCTTGGGAGacacac----------acacacacaca
s panTro5.chrY               25695763 64 -  26350515 GTCCATGAGCTGAT----AGCCTGAACTCAGCAGTGCTGTTCCCTTGGGacacacac----------acacacacaca
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       332647 64 +    378907 GTCCATGAGCTGAT----AGCCTGAACTCAGCAGTGCTGTTCCCTTGGGAGacacac----------acacacacaca
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              106992578 68 - 169600520 GTCCATGAGTTAATACTCAAGCTGAACTCAGCACTGCTGTTCCCTTGGGAGACAGac----------acacacacaca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65353742 78 + 171882078 GTCCATGAGTTAATACTCAAGCTGAACTCAGCACTGCTGTTCCCTTGGGAGACAGACAGACAGACAGacacacacaca
i macFas5.chr7              C 0 C 0
s otoGar3.GL873530            6717623 68 -  36342412 GACCACGAGCTGATAACCAGCCTGAACTCAGCAGCGCCCGGCTCCTGCAGGACACAT----------TTGCACACATA
i otoGar3.GL873530          C 0 I 17893
e aotNan1.NW_018511953v1       685219 25940 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       344788 1082 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e nomLeu3.chr6               18835039  0 - 121039945 C

a score=22010.000000
s hg38.chr15_KI270850v1_alt    234119 23 +    430880 cacacacacacacacacacacac
s panTro5.chrY               25695827 23 -  26350515 cacacacacacacacacacacac
i panTro5.chrY              C 0 I 34
s gorGor5.CYUI01015946v1       332711 23 +    378907 cacacacacacacacacacacac
i gorGor5.CYUI01015946v1    C 0 I 49
s rheMac8.chr7              106992646 23 - 169600520 cacacacacacacacacacacac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65353820 23 + 171882078 cacacacacacacacacacacac
i macFas5.chr7              C 0 C 0
e aotNan1.NW_018511953v1       685219 25940 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6717691 17893 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       344788 1082 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e nomLeu3.chr6               18835039  0 - 121039945 C

a score=11500.000000
s hg38.chr15_KI270850v1_alt    234142 10 +    430880 acacacacac
s panTro5.chrY               25695884 10 -  26350515 ACACACACAC
i panTro5.chrY              I 34 C 0
s gorGor5.CYUI01015946v1       332783 10 +    378907 ACACACACAC
i gorGor5.CYUI01015946v1    I 49 C 0
s rheMac8.chr7              106992669 10 - 169600520 acacacacac
i rheMac8.chr7              C 0 I 57
s macFas5.chr7               65353843 10 + 171882078 acacacacaG
i macFas5.chr7              C 0 I 39
s manLeu1.NW_012105520v1       345870 10 -   1458659 ACACACACCG
i manLeu1.NW_012105520v1    I 1082 C 0
e aotNan1.NW_018511953v1       685219 25940 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6717691 17893 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e nomLeu3.chr6               18835039  0 - 121039945 C

a score=4036.000000
s hg38.chr15_KI270850v1_alt    234152 7 +    430880 GAGTTGG
s panTro5.chrY               25695894 7 -  26350515 GGGTTGG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       332793 7 +    378907 GAGTTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65353892 7 + 171882078 GAGTTTC
i macFas5.chr7              I 39 C 0
s manLeu1.NW_012105520v1       345880 7 -   1458659 GAGTTGC
i manLeu1.NW_012105520v1    C 0 C 0
e aotNan1.NW_018511953v1       685219 25940 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6717691 17893 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1855067 0 -   1987038 I
e rheMac8.chr7              106992679 57 - 169600520 I
e nomLeu3.chr6               18835039 0 - 121039945 C

a score=14325.000000
s hg38.chr15_KI270850v1_alt    234159 10 +    430880 TGGTTGTGCT
s panTro5.chrY               25695901 10 -  26350515 TGGTTGTGCT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       332800 10 +    378907 TGGTTGTGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              106992736 10 - 169600520 TGGTTGTGCT
i rheMac8.chr7              I 57 C 0
s macFas5.chr7               65353899 10 + 171882078 TGGTTGTGCT
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       345887 10 -   1458659 TGGTTGTGCT
i manLeu1.NW_012105520v1    C 0 C 0
e aotNan1.NW_018511953v1       685219 25940 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6717691 17893 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e nomLeu3.chr6               18835039  0 - 121039945 C

a score=17810.000000
s hg38.chr15_KI270850v1_alt    234169 10 +    430880 GCCCGGAGCC
s panTro5.chrY               25695911 10 -  26350515 GCCCGGAGCC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       332810 10 +    378907 GCCCGGAGCC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              106992746 10 - 169600520 GCCCAGAGCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65353909 10 + 171882078 GCCCAGAGCC
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       345897 10 -   1458659 GCCCCGAGCC
i manLeu1.NW_012105520v1    C 0 C 0
s otoGar3.GL873530            6735584 10 -  36342412 GCCCCGAGCC
i otoGar3.GL873530          I 17893 C 0
e aotNan1.NW_018511953v1       685219 25940 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e nomLeu3.chr6               18835039  0 - 121039945 C

a score=150558.000000
s hg38.chr15_KI270850v1_alt    234179 74 +    430880 TCCAGTCCGCGAGTGTGAAGAACGGACCAGATGGGTCCAGCA-----GTGCTGGGTCAAGGCGAGGAGGGGGCAGCCGG
s panTro5.chrY               25695921 74 -  26350515 TCCAGTCCGCGAGTGTGAAGAACGGACCAGATGGGTCCAACA-----GTGCTGGGTCAAGGCGAGGAGGGGGCAGCCGG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       332820 74 +    378907 TCCAGTCCGCGAGTGTGAAGAACGAACCAGATGGGTCCAACA-----GTGCTGGGTCAAGGCGAGGAGGGGGCAGCCGG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              106992756 72 - 169600520 TCCAGTCCGTGA--GTGAGGAACGGACCACATGGGTCCAGCA-----GTGCTGGGTCAAGGCAAGGAGGGGGCAGCCGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65353919 72 + 171882078 TCCAGTCCGTGA--GTGAGGAACGGACCACATGGGTCCAGCA-----GTGCTGGGTCAAGGCGAGGAGGGGGCAGCCGG
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       345907 74 -   1458659 TCCAGTCCGTGAGTGTGAGGAACGGACCACATGGGTCCAGCA-----GTGCTGGGTCAAGGAGAGGAGGGGGCAGCCGG
i manLeu1.NW_012105520v1    C 0 C 0
s aotNan1.NW_018511953v1       711159 79 -   3745603 TCCAGTCCGCGGGTGAGAGGAACGGAGCAGATGGGTCGGGCAGAAGGGAGCTGGGTCAAGGCGAGGAGGGGGCGGCCGG
i aotNan1.NW_018511953v1    I 25940 I 97
s otoGar3.GL873530            6735594 79 -  36342412 TCCAGTCCGCTGGGGCGAGGAGCTGAGCAGATGGGCCGGGCTGAAGGGGGCTGGGTCACGACGAGGAgggggcggccgg
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e nomLeu3.chr6               18835039  0 - 121039945 C

a score=28137.000000
s hg38.chr15_KI270850v1_alt    234253 19 +    430880 AAGCGCGCGCATGCTCTGG
s panTro5.chrY               25695995 19 -  26350515 AAGCGCGCGCATGCTCTGG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       332894 19 +    378907 AAGCGCGCACATGCTCTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              106992828 19 - 169600520 AAGCGCGCACATGCTCTGG
i rheMac8.chr7              C 0 I 25808
s macFas5.chr7               65353991 19 + 171882078 AAGCGCGCACATGCTCTGG
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       345981 19 -   1458659 AAGCGCGTGCATGCTCTGG
i manLeu1.NW_012105520v1    C 0 I 18928
s otoGar3.GL873530            6735673 19 -  36342412 gcgcgctcgcgcgccacga
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1       711238 97 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e nomLeu3.chr6               18835039  0 - 121039945 C

a score=34601.000000
s hg38.chr15_KI270850v1_alt    234272 87 +    430880 ACTC-CTGCAGCCGCCAAAACGGGTGCGCAGGGTGCACGCgggttgaggggtgaggggcgacgggtgtgaggggcgagagggacggga
s panTro5.chrY               25696014 87 -  26350515 ACTC-CTGCAGCCGCCGAAACAGGTGCGCAGGGGGCGCGCGGTTtgaggggtgaggggtgacgggtgtgaggggcgagagggacggga
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       332913 87 +    378907 ACTC-CTGCAGCCGCCGAAATGAGTGCGCAGGGGGCGCGCgggttgaggggtgaggggtgacgggtgtgaggggcgagagggacggga
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65354010 72 + 171882078 TCTCGTTGCACCAGCCGAAATGGGTGTGCACGGGGCGCGC------AGGGATGAGGG---------GTGAGGGGTGAGAGGGACAGG-
i macFas5.chr7              C 0 C 0
s otoGar3.GL873530            6735692 54 -  36342412 -------gcacgcgccggcacgggggcgcgcggggtgcgc------cgggATGGGGA---------------------GGGGATGGGG
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1       711238 97 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e rheMac8.chr7              106992847 25808 - 169600520 I
e nomLeu3.chr6               18835039  0 - 121039945 C

a score=34693.000000
s hg38.chr15_KI270850v1_alt    234359 34 +    430880 gcggggtaggggCAGCCCTTTCCCAGGCGGTAGC
s panTro5.chrY               25696101 33 -  26350515 gcggggt-ggggCAGCCCTTTCCCAGGCGGTAGC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       333000 33 +    378907 gcgggtg-ggggCAGCCCTTTCCCAGGCGGTAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65354082 33 + 171882078 GCGGGAT-GGTGACAGCCTTTCCcaggcggtaac
i macFas5.chr7              C 0 I 18636
s aotNan1.NW_018511953v1       711335 34 -   3745603 gcggggtggggGCAGCCCTTTCCCAGGCGGTGGC
i aotNan1.NW_018511953v1    I 97 C 0
s otoGar3.GL873530            6735746 34 -  36342412 GCGGAGTGGGGGCAGCCCTTTCCCAGGCGGTAAC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e rheMac8.chr7              106992847 25808 - 169600520 I
e nomLeu3.chr6               18835039  0 - 121039945 C

a score=98369.000000
s hg38.chr15_KI270850v1_alt    234393 144 +    430880 GGGGGCTGTGGTGCTGTTGCCCTTTTAAGCTGCGGCTTGACAGGAGCAGCGTCTCCTGTCGGTGGAGTCTGTTACAAGGGGAGCAGCCGCCCAGGCCGCCACACAGCTCCCCGCAGAGGCCTCGGTGCCCCTTGCCATTTTCCA
s panTro5.chrY               25696134 144 -  26350515 GGGGGCTGTGGTGCTGTTGCCCTTTTAAGCTGCGGCTTGACAGGAGCAGCGCCTCCTCTCGGTGGAGTCTGTTAGAAGGGGAGCAGCCGCCCAGGCCGCCACACAGCTCCCCGCAGAGGCCTTGGTGCCCCTTGCCATTTTCCA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       333033 144 +    378907 GGGGGCTGTGGTGCTGTTGCCCTTTTAAGCTGCGGCTTGACAGGAGCAGCGCCTCCTGTCGGTGGAGTCTGTTACAAGGGGAGCAGCCGCCCAGGCCGCCACACAGCTCCCCGCAGAGGCCTCGGTGCCCCTTGCCATTTTCCA
i gorGor5.CYUI01015946v1    C 0 C 0
s aotNan1.NW_018511953v1       711369 136 -   3745603 GGGGGCGGCGTCGCTGTTGCCCTTTTAAGCCG--------CCGGGCCGCCGCCTCCTGCCGCTGCAGTGGGTTACAAAGGGAGCAGCAGCCCAGGCCGCCTCACAGCTACCCGCCGAGGCTTCCGCGCCCCTCGCCATTTTCCA
i aotNan1.NW_018511953v1    C 0 I 52
s otoGar3.GL873530            6735780 136 -  36342412 GGGGGCGGCGTCGCAGTTACCCTTTTAAGCCG--------GCGGGCCGCCGCCTCCTGCCGGTGGAGTCGGTTACAAAGGGAGCGGCCGCCTAGGCCACTGCACTGCTGCCCGCCGAGGCCTCCGTGCCCCTCGCCATTTTTCA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I
e rheMac8.chr7              106992847 25808 - 169600520 I
e nomLeu3.chr6               18835039   0 - 121039945 C

a score=28728.000000
s hg38.chr15_KI270850v1_alt    234537 70 +    430880 GCCCTACTCCGACTAGAGTTGAGGCAGCAGGGAGAGGCGGAGCTGGGAGAGCGCCGCCGAGA--GGTCCCGC
s panTro5.chrY               25696278 70 -  26350515 GCCCTACTCTGACTAAAGTTGAGGCAGCAGGGAGAGGCGGAGCTGGGAGAGTGCCGCCGAGA--GGTCCCGC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       333177 70 +    378907 GCCCTACTCCGACTAGAGTTGAGGCAGCAGGGAGAGGCGGAGCTGGGAGAGCGCCGCCGAGA--GGTCCCGC
i gorGor5.CYUI01015946v1    C 0 C 0
s otoGar3.GL873530            6735916 72 -  36342412 gccgcgcgccgacgcgggtcgcagcggcggggggaggcggagccgcgagagcgcggcccgggccggccccgc
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1       711505 52 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I
e rheMac8.chr7              106992847 25808 - 169600520 I
e nomLeu3.chr6               18835039  0 - 121039945 C

a score=97673.000000
s hg38.chr15_KI270850v1_alt    234607 141 +    430880 -GGGTGGTTGCGGCCGTGACAGCGGCTCCCGA-CGGGCTCACCTTCCGCGCCCCTCCCGCCAGAGGTGAGAGTAAAATGTCCGTGTGAGGGTTCAAGGCCAAGCTGAGGTTGTTGGCCTCTATCTTCCACAAGAACCAGGAGC---------------------------------------------------------------------------------------
s panTro5.chrY               25696348 141 -  26350515 -GGGTGGTTGCGGCCGTGACAGCGGCTCCCGA-CGGGCTCACCTTCCGCGCCCCACCTGCCAGAGGTGAGAGTAAAATGTCCCTGTGAGGGTTCAAGGCCAAGCTGAAGTTGTTGGCCTCTATCTTCCACAAGAACCAGGAGC---------------------------------------------------------------------------------------
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       333247 141 +    378907 -GGGTGGTTGCGGCCGTGACAGCGGCTCCCGA-CGGGCTCACCTTCCGCGCCCCTCCCGCCAGAGGTGAGAGTAAAATGTCCGTGTGAGGGTTCAAGGCCAAGCTGAAGTTGTTGGCGTCTATCTTCCACAAGAACCAGGAGC---------------------------------------------------------------------------------------
i gorGor5.CYUI01015946v1    C 0 C 0
s aotNan1.NW_018511953v1       711557 142 -   3745603 -GGGCGGTCGCGGCCGTGACGGCGGCTCCGGGCCCGGCTCCCCTTCCGCGCCCCTCCCGCCGGAGATGAGGGGAAGATGTCCGTGTCAGGGCTCAAGGCCGAGCTGAAGTTCCTGGCGTCCATCTTCCACAAGAACCACGAGC---------------------------------------------------------------------------------------
i aotNan1.NW_018511953v1    I 52 I 80
s otoGar3.GL873530            6735988 230 -  36342412 ggggcggtcgcggccgtgacggcggctccgggccgggcTCCCCTTCCGCACCCCTCCTGCTGGAGATGAGGGGAAGATGTCCGTGTCAGGGCTCAAGGCCGAGCTGAAGTTCCTGGCGTCCATCTTCGACAAGAACCACGAGCGATTCCGCATCGTCAGCTGGAAGCTGGACGAGCTGCATTGCCAGTTCCTGGTgcctccgccggcgtcgccaggcggcccccgctcgc
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I
e rheMac8.chr7              106992847 25808 - 169600520 I
e nomLeu3.chr6               18835039   0 - 121039945 C

a score=525.000000
s hg38.chr15_KI270850v1_alt    234748 2 +    430880 CC
s panTro5.chrY               25696489 2 -  26350515 CG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       333388 2 +    378907 CG
i gorGor5.CYUI01015946v1    C 0 C 0
s otoGar3.GL873530            6736218 2 -  36342412 cg
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1       711699 80 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1855067 0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I
e rheMac8.chr7              106992847 25808 - 169600520 I
e nomLeu3.chr6               18835039 0 - 121039945 C

a score=87172.000000
s hg38.chr15_KI270850v1_alt    234750 117 +    430880 CCGCCACAGCTCACGCTCCACTGCAACATCACGGTGAGGCGCCCAGTGGCGGCCTCACGGGCCAGGGCGAGGGCGGAGAGGAGGCGCCCAGAGTCCCGGGACAAAGGGGAGCCTGCC
s panTro5.chrY               25696491 116 -  26350515 CTGCCGCAGCTCATGCTCCACTGCAACATCACGCTGAGGCGCCCAGTGGCGGCCTCACGGG-CAGGGCAAGGGCGGAGAGGAGGCGCCCAGAGTCCCGGGACAAAGGGGAGCCTGCC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       333390 117 +    378907 CCGCCGCAGCTCACGCTCCACTGCAACATCACGGTGAGGCGCCCAGTGGCGGCCTCACGCGGCAGGGCGAGGGCGGAGAGGAGGCGCCCAGAGTCCCGGGACAAAGGGGAACCTGCC
i gorGor5.CYUI01015946v1    C 0 C 0
s aotNan1.NW_018511953v1       711779 112 -   3745603 ccgccgccgcTCACGCTCCACTGCAACATCACGGTGAGGCGCCCGGCCGCGACCCCG-----CAGGGCCAGGGCGGAGAGGGGGCGCCCCGCGTCCCGGGACAAAGGGGAGCCTGCC
i aotNan1.NW_018511953v1    I 80 I 49
s otoGar3.GL873530            6736220 111 -  36342412 ccgccgccgcTCACACTCCACTGCAACATCACGGTGAggcgcccggccgcggccccg-----gcgggcgggggcggAAAGGGGGCGCCCTGAGT-CCGGGACAAAGGGGAGCCTgcc
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I
e rheMac8.chr7              106992847 25808 - 169600520 I
e nomLeu3.chr6               18835039   0 - 121039945 C

a score=26579.000000
s hg38.chr15_KI270850v1_alt    234867 66 +    430880 -CGGGAGAGGCCCCGGTTCCCCAGGCGGGGCGAGCGCGCCCCTTTCTCCCGCGTCTGGCCCGCCCCG-------------
s panTro5.chrY               25696607 66 -  26350515 -CGGGAGAGGCCCCGGTTCCCCAGGCGGGGCAAGCGCGCCCCTTTCTCCCGCGACTGGCCCGCCCCG-------------
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       333507 66 +    378907 -CGGGAGAGGCCCCGGTTCCCCGGGCGGGGCGAGCGCGCCCCTTTCTCCCGCGACTGGCCCACCCCG-------------
i gorGor5.CYUI01015946v1    C 0 C 0
s otoGar3.GL873530            6736331 79 -  36342412 ccggaggggcccccggctccccgggcggggccggcccgccccTTTC-CCGGCTCGTGGCCCGCCCCAGGCCCCGCTGGGA
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1       711891 49 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I
e rheMac8.chr7              106992847 25808 - 169600520 I
e nomLeu3.chr6               18835039  0 - 121039945 C

a score=36114.000000
s hg38.chr15_KI270850v1_alt    234933 44 +    430880 CTGTGTGAGGCTTGCGTGGGAGGAGGGGGAGGGCGCGTCTCTCT
s panTro5.chrY               25696673 44 -  26350515 CTGCGTGAGGCTTGCGTGGGAGGAGGGGGAGGGCGCGTCTCTCT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       333573 44 +    378907 CTGCGTGAGGCTTGCGTGGGAGGAGGGGGAGGGCGCGTCTCTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s aotNan1.NW_018511953v1       711940 44 -   3745603 CTGTGCGAGGCTTGGGTGGGAGGGGGCGGAGGGCGCGTGTCTCT
i aotNan1.NW_018511953v1    I 49 I 272
s otoGar3.GL873530            6736410 44 -  36342412 CTGCGCGAGGCTTGGGTGGGAGGAGGTGGAGGACGCGTCTCTCC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I
e rheMac8.chr7              106992847 25808 - 169600520 I
e nomLeu3.chr6               18835039  0 - 121039945 C

a score=84288.000000
s hg38.chr15_KI270850v1_alt    234977 225 +    430880 GGCTCCTTGCCGCGGGGCTGGCTTGGGGGCTGCCGGCACCTCTC-GCCCCAGTCGCTGCGCCCTGAGGTGGGAGCCCGCGTCGCCCGCAGACCTGTTGGGGC-CCATGATCGCCCTCAGTCAGCTAGCCTGCTCCCCTGGACCGCGACGGGGCGTGGCAGGGCGGCTCCCGCTGTTGTTTGAGCCCAGTGAGGGAAGGGGAAAGGCCTTTAAGATTTTCGGTTTTTT
s panTro5.chrY               25696717 225 -  26350515 GGCTCCTTGCTGCGGGGCTGGCTTGGGGGCTGCCGGCACCTCTG-GCCCCAGTCGCTGCGCCCTGAGGTGGGAGCCCGCGTCGCCCGCAGCCCTTTTGGGGC-CCATGATCGCCCTCAGTCAGCTAGCCTGCTCCCCTGGACCGCGACGGGGCGTGGCAGGGTGGCTCCAGCTGTTGTTTGAGCCCAGTGAGGGAAGGGGAAAGGCCTTTAAGATTTTCGGTTTTTT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       333617 225 +    378907 GGCTCCTTGCCGCGGGGCTGGCTTGGGGGCTGCCGGCACCTCTC-GCCCCAGTCGCTGCGCCCTGAGGTGGGAGCCCGCGTCGCCCGCAGCCCTTTTGGGGC-CCATGATCTCCCTCAGTCAGCTAGCCTGCTCCCCTGGACCGCGACGGGGCGTGGCAGGGCGGCTCCCGCTGTTGTTTGAGCCCAGTGAGGGAAGGGGAAAGGCCTTTAAGATTTTCGGTTTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s otoGar3.GL873530            6736454 201 -  36342412 GGCTCTTCGC-GCGAGGCTGGCTTTGGGGCTGTGGGTCCCTCTCGGCCCCCGTCGCCGCGTCCCGGGGTGGGAGACCGCCGTGGCCCCAGCCTCTCCGGGTCGCCATGGCCGCCCGCAGCC-----GCCCG------------GCGGCCAGGCGCGTCGTGTC--------CGGCTGTTTGAGCCTGGGCGGGGAAGGCAAAAGGCCTTTAAGTTCCtttttttctt
i otoGar3.GL873530          C 0 I 36
e aotNan1.NW_018511953v1       711984 272 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I
e rheMac8.chr7              106992847 25808 - 169600520 I
e nomLeu3.chr6               18835039   0 - 121039945 C

a score=87214.000000
s hg38.chr15_KI270850v1_alt    235202 316 +    430880 ggccgggcgcagtgctcattcctgtaatcccagcactatgggagactgaggcagctggatctcctgaggtcaggagttctagaccagcctggccaacatggtaaaaccctgtctctactaaaaatacaaaaattagccgggcatggtggcaggcgcttcttgagatggagtctcactctgtcgcccaggctggagtgcagtggagcgatctcggcatactgcagcctccatctcttgacagtctgtgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacgggcgcccgccaccacgcctgg
s panTro5.chrY               25696942 316 -  26350515 ggccgggcgcagtgctcattcctgtaatcccagcactatgggagactgaggcagctggatctcctgaggtcaggagttctacaccagcctggccaacatggtaaaaccccgtctctactaaaaatacaaaaattagccgggcatggtggcAGGAGCttcttgagatggagtctcactctgtcgcccaggctggagtgcagtggggcgatctcggcatactgcagcctccatctcttgacagtccgtgtgttcaagcgattctcctgcctcagcctcccgagtagctgggattacgggcgcccgccaccacgcctgg
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       333842 316 +    378907 ggccgggcgcagtgctcattcctgtaatcccagcactatgggagactgaggcagctggatctcctgaggtcaggagttctagagcagcctggccaacatggtaaaaccctgtctctactaaaaatacaaaaattagccgggcatggtggcAGACGCttgttgagatggagtctcactctgtcgtccaggctggagtgcagtggggcgatctcggtatactgcagcctccatctcttgacagtccgtgggttcaagcaattctcctgcctcagcctcccgagtagctgggattacgggcgcccgccaccacgcctgg
i gorGor5.CYUI01015946v1    C 0 C 0
e aotNan1.NW_018511953v1       711984 272 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6736655  36 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I
e rheMac8.chr7              106992847 25808 - 169600520 I
e nomLeu3.chr6               18835039   0 - 121039945 C

a score=72162.000000
s hg38.chr15_KI270850v1_alt    235518 140 +    430880 ctaagttttgtgttgtttagtagagatggggtttcatcatgttggccaggctggtctcgaactcctgacctcaaatgacccatctctgcctcccagagttctgggattacaggcctgagccaccgcgcccagATCCAAGG
s panTro5.chrY               25697258 140 -  26350515 ctaacttttgtgttgtttagtagagacggggtttcatcatgttggccaggctggtctcgaactcctgacctcaaatgacccatctctgccgcccagagttctgggattacaggcctgagccaccgcgcccggATCCAAGG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       334158 140 +    378907 ctaacttttgtgttgtttagtagagacggggtttcatcatgttggccaggctggtctcgaactcctgacctcaaatgacccctctctgcctcccagagttctgggattacaggcctgagccaccgcgcccggATCCAAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18835039 140 - 121039945 ctaacttttgtgttgtttactagagactgggtttcaccatgttagccaggctggtctcaaactcctgacctctaatgacccaactctgcctcccaaagctctgggattacaggcctgagccaccacacctggATCCAAGG
i nomLeu3.chr6              C 0 C 0
e aotNan1.NW_018511953v1       711984 272 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6736655  36 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I
e rheMac8.chr7              106992847 25808 - 169600520 I

a score=45843.000000
s hg38.chr15_KI270850v1_alt    235658 66 +    430880 CCCTTAAG-CTTAAATGCCTCGTTCTTC---AGTCAGGTTTTCCTTGTTCCCGCATGTTCAGCCAATCGT
s panTro5.chrY               25697398 66 -  26350515 CCCTTAAG-CTTAAATGCCTCGTTCTTC---AGTCAGGTTTTCCTTGTTCCCGCATGTTCAGCCAATCGT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       334298 65 +    378907 -CCTTAAG-CTTAAATGCCTCGTTCTTC---AGTCAGGTTTTCCTTGTTCCCGCATGTTCAGCCAATCGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18835179 66 - 121039945 CCCTTAAG-CTTAAACGCCTTATTCTTC---AGTCAGGTTTTCCTTGTTCCCGCGTGTTCAGCCAATCGT
i nomLeu3.chr6              C 0 C 0
s otoGar3.GL873530            6736691 70 -  36342412 CTTTTAAGTTTTAAACGCTTCATTCCTCTTTAGTCAGGTTTCCCTCGTTGCCTGTTGTTGAACCAGTTCT
i otoGar3.GL873530          I 36 I 6
e aotNan1.NW_018511953v1       711984 272 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I
e rheMac8.chr7              106992847 25808 - 169600520 I

a score=96938.000000
s hg38.chr15_KI270850v1_alt    235724 88 +    430880 GTTTAAGGAGAAACTAACAATGAAAACGGACTCGTTGATGGAGGAAAAG--TTGGAATGCAGCCTCTGGTGCTGTTTGAGCGATCCCTCT
s panTro5.chrY               25697464 88 -  26350515 GTTTAAGGAGAAACTAACAATGAAAACGGACTCGTTGATGGAGGAAAAG--TTGGAATGCAGCCTCTGGTGCTGTTTGAGCGATCCCTCT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       334363 88 +    378907 GTTTAAGGAGAAACTAACAATGAAAACGGACTCGTTGATGGAGGAAAAG--TTGGAATGCAGCCTCTGGTGCTGTTTGAGCGATCTCTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18835245 87 - 121039945 TTTTAAGGAGAAACTAACAATGAAAACGGACTCGTTGAC-GAGGAAAAG--TTGGAATGCAGCCTCTGGTGCTGTTTGAGCGATCCCTCT
i nomLeu3.chr6              C 0 C 0
s aotNan1.NW_018511953v1       712256 88 -   3745603 GTTTAAGGAGAAACTGACAACGAAAACGGACTCGTTGACGGAGGAAAAG--TTGGAATGCGGCCCCTGGTGCTGTTGGAGCGACCCCTCT
i aotNan1.NW_018511953v1    I 272 I 3511
s otoGar3.GL873530            6736767 90 -  36342412 GTTTAAGGACAAACTAACATTGAAAACGCACTCATTTAAGGAAAAAAAAGTTTCCAGTGCAGTCCCTAGTGCTGTATGATTTATCCCTTT
i otoGar3.GL873530          I 6 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I
e rheMac8.chr7              106992847 25808 - 169600520 I

a score=37980.000000
s hg38.chr15_KI270850v1_alt    235812 56 +    430880 ACCCCGGGTCGCTGCTGTGTTCTGGAAAGGCGCATTGTACCCTGGATGCAGCAGGT
s panTro5.chrY               25697552 56 -  26350515 ATCCCGGGTCGCTGCTGTGTTCTGGAAAGGCGCATTGTACCCTGGATGCAGCAGGT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       334451 56 +    378907 ATCCCGGGTCGCTGCTGTGTTCTGGAAAGGCGCATTGTACCCTGGATGCAGCAGGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18835332 56 - 121039945 CCCCCGGGCCGCTGCTGTGTTCTGGAAAGGTGCATTGTACCGTGGATGCAGCAGGT
i nomLeu3.chr6              C 0 C 0
s otoGar3.GL873530            6736857 51 -  36342412 --TCCG---CGCTGAAGTGTTTCTGAAAGGCGTATAGTACCTTCCCTGCGGCAGGT
i otoGar3.GL873530          C 0 I 2577
e aotNan1.NW_018511953v1       712344 3511 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I
e rheMac8.chr7              106992847 25808 - 169600520 I

a score=7110.000000
s hg38.chr15_KI270850v1_alt    235868 13 +    430880 AAGAGTCCTGTCC
s panTro5.chrY               25697608 13 -  26350515 AAGAGTCCTGCCC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       334507 13 +    378907 AAGAGTCCTGTCC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18835388 13 - 121039945 AAGAGTCCTGTCC
i nomLeu3.chr6              C 0 C 0
e aotNan1.NW_018511953v1       712344 3511 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6736908 2577 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I
e rheMac8.chr7              106992847 25808 - 169600520 I

a score=334125.000000
s hg38.chr15_KI270850v1_alt    235881 514 +    430880 AGGTGCTCTGCCCGCTTTTCCTTTCAGGCTTCTGTATCAGCTGTTTTTCCCCTGTAGAATGTGCCCCTGACAGCCACCCCCTAACCCT------ACCCAATTTGTCTTT---ACGTGTCTGACCATCAAGGCTCTTCTGGGTCATATTTAATTCATGCTGATATTTCCCCTTCCTCCCCTCTTTAGTC----CTATTTTTGCTTTGGTTATG----TTATGCTATATTCTG-----------------TAAGGC--------------TTTAAAAAAA-TTTTTATGGTGGCAGGGGAG----------------------------------------------------------------------AATGTTTTATAATTA-----------------------------------------------TGCTTT-------------------------------------------------------------------GTGCTTTTTAT----------------------------CTTCCACTCAATAAATGCTTGGTAAATATTTGTTTTATTGAATGTATGACCCTATTCTAGCTATATTGTGC-TTGAACAAAAACCTTAACTGCCTAGTAAGTTAACTGCTAAGAATTTGTCAGAAGTGCAGACATAACATCAAGAACTTGTCATGGATAGTACAAAAACGTCACTTAAGGGCTTGGTGGAAGCCTGTAAATTGACTTCCTATGAAAGAGAGTGTAAGAAGTGA
s panTro5.chrY               25697621 517 -  26350515 AAGTGCTCTGCCCGCTTTTCCTTTCAGGCTTCTGTATCAGCTGTTTTTCCCCTGTAGAATGTGCCCCTGACAGCCACCCCATAACCCT------ACCCAATTTGTCTTT---ACGTGTCTGACCATCAAGGCTCTTCTGGGTCATATTTAATTCATGCTGATATTTCCCCTTCCTCCCCTCTTTAGTCCTCACTATTTTTGCTTTGGTTATG----TTATGCTGTATTCTG-----------------TAAGGC--------------TTTAAAAAAA-ATTTTATGGTGGCAGGGGAG----------------------------------------------------------------------AATGTTTTATAATTA-----------------------------------------------TACTTT-------------------------------------------------------------------GTGCTTTTTAT----------------------------CTTCCACTCAATAAATCCTTGGTAAATATTTGTTTTATTGGATGGATGAGCCTATTCTAGCTATATTGTGC-TTGAAAAAAAATCTTAACTGCCTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTGCAGACATAACATCAAGAACTTGTCATGGATAGTACAAAAAGGTCTC-TAAGGGCTTGATGGAAGCCTGTAAATTGACTTCCTATGAAAGAGAGTGTAAGAAGTGA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       334520 513 +    378907 AGGTGCTCTGCCCGCTTTTCCTTTCAGGCTTCTGTATCAGCTGTTTTTCCCCTGTAGAATGTGCCCCTGACAGCCACCGCCTAACCCT------ACCCAATTTGTCTTT---ACGTGTCTGACCATCAAGGCTCTTCTGGGTCATATTTAATTCATGCTGATATTTCCCCTTCCTCCCCTCTTTAGTC----CTATTTTTGCTTTGGTTATG----TTATGCTGTATTCTG-----------------TAAGGC--------------TTTAAAAAAA-TTTTTATGGTGGCAGGGGAG----------------------------------------------------------------------AATGTTTTATAATTA-----------------------------------------------TGCTTT-------------------------------------------------------------------GTGCTTTTTAT----------------------------CTTCCACTCAATAAATGCTTGGTAAATATTTGTTTTATTGAATGTATTACCCTATTCTGGCTATATTGTGC-TTCAAAAAAAATCTTAACTGCCTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTGCAGACATAACATCAAGAACTTGTCACGGATAGTACAAAAAGGTCTC-TAAGGGCTTGATGGAGGCCTGTAAATTGACTTCCTATGAAAGAGAGTGTAAGAAGTGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18835401 518 - 121039945 AGGTGCTCTGCCCGCTTTTCCTTTCAGGCTTCTATATCAGCTGTTTTTCCCCTGTAGAATGTGCCCCTGACAGCCACCCCCTAACCCT------ACCCAATTTGTCTTT---ACGCGCCTGACCATCAAGGCTCTTCTGGGTCATATTTAGTTTGTGCTGATGTTTCCCCTTCCTCCCCTCTTTAGTCCTCACTATTTTTGCTTTGGTCATG----TTATGCTGTATTCTG-----------------TAAGGC--------------TTAAAAAAACTTTTTTATGGTGGCAGGGGAG----------------------------------------------------------------------AATGTTTTATAAGTA-----------------------------------------------TGCTTT-------------------------------------------------------------------GTGCTTTTTAT----------------------------CTTCCACTCAATAAATGCTTGGTAAATGTTTGTTTTATTGAATGTATGACCCTATTCTAGCTATATTGTGC-TTGAACAAAAATCTTAACTGCTTTGTAAGTTAACTGCTAAGAATTTGTCAAAAGTGCAGACATAACTTCAAGAACTTGTCATGGATAGTACAAAAAGGTCTC-TAAGGGCTTGATGGAAGTCTGTAAATTGACTCCCTATGAAAGAGAGTGTAAGAAGTGA
i nomLeu3.chr6              C 0 C 0
s otoGar3.GL873530            6739485 765 -  36342412 AGACACTGTGTCCCCTTTTTCTTTCAGGCTTCTGTATCAGCTGTTGTTCCCATGAGGAATGTGCCTCCAAC-----TTCTCTAACCCTTACCAGACCCAGCCTATCTTTCAAATCTGACTATCCCTCAAGGCCTTTCTGGGTCATACGTAGTCCATGCTGATATTTCCCCTTGCTCC---CTTTAGTCCTTACTATTTCTATCTTGGTTATGTTTTTTATACTGTATTCTATTACAGTTTGGGGTGTTTAAGCCTTTTtttttttttttttaattaaa-tttttttttttgtagagatggagtctcactgtgttacccccaggctactctcactcctgatctcaagtgatcctcctgccttggcgtctcaaagtcttagaattagaggtgtcagctactacatctagccTTGTATCTtttttatttttatttgcttttattatttttattttttaatttttgttATATTTATTATGTTTTTTAGCCTTATGTCTTTTTTAAAAGGTTTTTTTTATGGCAGCAAGGGAGAAAATTTTCATTCAccttctactcagtaaatgctcagtaaatatttgttTTACTGACTATATGGCCTCATTCTAGCTATATTCTACTTTGAACAGAAATCTTAACTACCTTGTGGGTTTGCTGCCAAGAGGTTGTAAAAATTGCAGAGATAATACCAAGAATAT-TCGTGGACAGTATGAAAAGGTCAT-TGAAGGCTTATAGGAAATCTGTACATTGACTTCATATGAAAGACAGTGTAAGAAATGG
i otoGar3.GL873530          I 2577 C 0
e aotNan1.NW_018511953v1       712344 3511 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I
e rheMac8.chr7              106992847 25808 - 169600520 I

a score=6790.000000
s hg38.chr15_KI270850v1_alt    236395 3 +    430880 AAA
s panTro5.chrY               25698138 3 -  26350515 AAA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       335033 3 +    378907 AAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18835919 3 - 121039945 AAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62573823 3 + 169600520 AAA
i rheMac8.chr7              n 25808 C 0
s macNem1.NW_012011056v1      6233780 3 -   6271500 AAA
i macNem1.NW_012011056v1    N 0 C 0
s aotNan1.NW_018511953v1       715855 3 -   3745603 AAA
i aotNan1.NW_018511953v1    I 3511 C 0
s otoGar3.GL873530            6740250 3 -  36342412 GAA
i otoGar3.GL873530          C 0 I 1362
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1855067 0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I

a score=4011.000000
s hg38.chr15_KI270850v1_alt    236398 2 +    430880 TG
s panTro5.chrY               25698141 2 -  26350515 TG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       335036 2 +    378907 TG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18835922 2 - 121039945 TG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62573826 2 + 169600520 TG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      6233783 2 -   6271500 TG
i macNem1.NW_012011056v1    C 0 C 0
s aotNan1.NW_018511953v1       715858 2 -   3745603 TG
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6740253 1362 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616 0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012002657v1      1855067 0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I

a score=122522.000000
s hg38.chr15_KI270850v1_alt    236400 76 +    430880 TAAAGCATGACTGGAGAGCCAGAGTGATGAAGCCAGGGTCCCTTTCTCCAGATCCTTTGTAACAGTGTTATGTGAT
s panTro5.chrY               25698143 76 -  26350515 TAAAGCATGGGTGGAGAGCCAGAGTGATGAAGCCAGGGTCCCTTTCTCCAGATCCTTTGTAACACTGTTATGTGAT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       335038 76 +    378907 TAAAGCATGACTGGAGAGCCACAGTGATGAAGCCAGGGTCCCTTTCTCCAGATCCTTTGTAACAGTGTTATGTGAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18835924 26 - 121039945 TAAAGCATGACTGGAGACCCAGAGTG--------------------------------------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62573828 76 + 169600520 TAAAGCATGCCTGGAGAGCCAGAGTGATGAAGCCAGGGTCCCTTTCTCCAGAGCCTTTGTAACAGTGTTATGTGAT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      6233785 76 -   6271500 TAAAGCATGACTGGAGAGCCAGAGTGATGAAGCCAGGGTCCCTTTCTTCAGATCCTTTGTAACAGTGTTATGTGAT
i macNem1.NW_012011056v1    C 0 C 0
s aotNan1.NW_018511953v1       715860 75 -   3745603 TAAAGCATGACTGGAGAACTGGAGTGATAAAGCAAGGGTCCCCAT-TCCAGATCCTTTGTAACAGTGTTATGTGAT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6741615 76 -  36342412 TAAAGCACTCCTGGAGAGCCAGAGTGATAAAGGATGGGTCCTTTTCCCCAAGTCCTTTCTAACAGTGTTAAGTGAT
i otoGar3.GL873530          I 1362 I 240
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I

a score=915655.000000
s hg38.chr15_KI270850v1_alt    236476 489 +    430880 CTCTTCTAGAAGATCGTTCTGAAAGATAATGCCAACTCGGAACCTAGGAAACCATCCAGTGGGTTTCTGCAGCTTAGGTGTTTCAAATCCTCATCAGCACGTTTGTTTTCTCTGCCTCAGTTTGCTTACAATGATGTTCTCAGTAGCTACAA-TTG----CTGTCTTTGAATACGTAAGCA-------TTTTTTTTTAGGTGACAGGG-ATATATGTGCATTTTTATTTTACCAAGTGTTAGAATTTTGACTCTGCTTTTGTGGGCTCTGGGTTAGCTACTTGGTT-----GTTGTAAAATGATTAGCAGGGAAAGC---------------tgtgtgtgtgtgtgtgtatgtgtgtgtgtTATAAGTTTCTTT---TGTTGTCAGAGGACTTAGAATTTTATT------TTATATGGTAATTCTGTCAATTTACTTTATTCTCCACCCCACATTTATTGAACAGCAAATTATGAAAGTAATGTGTCCCATAAGCAGCCTTCAGAAGAATT-ACAACTGCTGTATATCTGAA
s panTro5.chrY               25698219 496 -  26350515 CTCTTCTAGAAGATCGTTCTGAAAGATAATGCCAACTCGGAACCTAGGAAACCATCCAATGGGTTTCTGCAGCTTAGGTGTTTCAAATCCTCATCAGCACGTTTGTTTTCTCTGCCTCAGTTTGCTTACAATGATGTTCTCAGTAGCTACAA-TTGCTGTCTGTCTTTGAATACTTAAGCA--------TTTTTTTTAGATGACAGGG-ATAAATGTGCATTTTTATTTTACTGAGTGTTAGAATTTTTACTCTGCTTTTGTGGGCTCTAGGTTAGCTACTTGGTT-----GTTGTAAAATGATTAGCAGGGAAAGCTCt-----------gtgtgtgtgtctgtgtgtgtgtgtgtgtgtTTTAAGTTTCTTT---TGTTGTCAGAGGACTTAGAATTTTATT------TTATATGGTAATTCTTTCAATTTACTTTATTCTCCACCCCACATTTATTGAACAGCAAAGTATGAAAGTAATGTGTCCCATAAGCAGCCTTCAGAAGAATT-ACAACTGCTGTATATCTGAA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       335114 506 +    378907 CTCTTCTAGAAGATCGTTCTGAAAGATAATGCCAACTAGGAACCTAGGAAACCATCCAGTGGGTTTCTGCAGCTTAGGTGTTTC-AATCCTCATCAGCACGTTTGTTTTCTCTGCCTCAGTTTGCTTACAATGATGTTGTCAGTAGCTACAA-TTGCTGTCTGTCTTTGAATACTTAAGCA--------TTTTTTTTAGATGACAGGG-ATATATGTGCATTTTTATTTTACCAAGTGTTAGAATTTTTACTCTGCTTTTGTGGGCTCTGGGTTAGCTACTTGGTT-----GTTGTAAAATGATTAGCAGGGAAAGCTCtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTTAAGTTTCTTT---TGTTGTCAGAGGACTTCGATTTTTATT------TTATATGGTAATTCTGTCAACTTACTTTATTCTCCACCCCACATTTATTGAACAGCAAAGTATGAAAGTAACGTGTCCCATAAGCAGCCTTCAGAAGAATT-ACAACTGCTGTATATCTGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18835950 486 - 121039945 ---TTCTAGAAGATCGTTCTGAAAGATAATGCCTACTCGGGACCTAGGAAACCATCTAGTGGGTTTCTGCAGCTTAGGTGGTTCAAATCCTCATCAGCACCTTTGTTTTCTCTGCCTCAGTTTGCTTACAGTGATGTTCTCAGTAGCTGTAA-TTGCTGTCTGTCTTTGAATACTTAAGCA---------TATTTTTAGATGACAGGG-ATATATGTGCATTTTTATTTTACCAAGTGTTAGAATTTTTACTCTGCTTTTGTGGTCTCTGGGTTAGCTACTTGGTT-----GTTGTAAAATGATTAGCAGGGAAAAC-----------------tgtgcgtgtgtgtgtgtatgtgtgtATTTTAAGTTTCTTT---TGTTGTCGGAGGACTTCGAATTTTATT------TTATATGGTAATTCTGCCAATTTGCTTTATTCTCCATCCCACATTTATTGAACAGCAAAGTATGAAAGTAATGTGTTCCATAAGCAGCCTTCAGAAGAATT-ACAACTGCTGTATATCAGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62573904 494 + 169600520 CTCTTCTAGAAGATCGTTCTGAAAGATAATGCCAGCTCGGAACCTAGGAAACCATCCAGCGGGTTTCTGCAGCTTAGGTGGTTCAAATCCTCTTCAGCATGTTGGTTTTCTCTGCCTCAGTTTGCTTCCAATGATGTTCTCAGTAGCTGTAA-TTGCTGTCTGTCTTTGAATACTCAAGCtttttttttttttttttAGCTCACACAG-GTATGTATGCATTTTTATTTTACCAAGTGTTAGAACTTTGACCCTCCTTTTGTGGGCTCTGGGTCAGCAACTTGGTTGTTTAGTTGTAAAATGGTTAGCAGGGAAAAA---------------------CAtgtgtgtgtgtgtgtctgtATTTTAAGTTGATTT---TGTTGTCAGAGCACTTAGA-----ATT------TTATATGGAAATTCTGTCAGTTTACTTGCTTCTCCACCCCACATTTATTGAACAGCAAAGTTTGAAAGTAATGTGTCCCATAACCAGCCTTCAGAAGAATC-ACAACTGCTTTATCTCTGAA
i rheMac8.chr7              C 0 I 47
s macNem1.NW_012011056v1      6233861 491 -   6271500 CTCTTCTAGAAGATCGTTCTGAAAGATAATGCCAGCTCGGAACCTAGGAAACCATCCAGCGGGTTTCTGCAGCTTAGGTGGTTCAAATCCTCTTCAGCATGTTGGTTTTCTCTGTCTCAGTTTGCTTCCAATGATGTTCTCAGTAGCTGTAA-TTGCTGTCTGTCTTTGAATACTCAAGC---TTTTTTTTTTTTTTAGCTCACACAG-GTATGTATGCATTTTTATTTTACCAAGTGTTAGAACTTTGACCCTCCTTTTGTGGGCTCTGGGTCAGCAACTTGGTTGTTTAGTTGTAAAATGGTTAGCAGGGAAAAA---------------------CAtgtgtgtgtgtgtgtctgtATTTTAAGTTGATTT---TGTTGTCAGAGCACTTAGA-----ATT------TTATATGGAAATTCTGTCAGTTTACTTGCTTCTCCACCCCACATTTATTGAACAGCAAAGTTTGAAAGTAATGTGTCCCATAACCAGCCTTCAGAAGAATC-ACAACTGCTTTATCTCTGAA
i macNem1.NW_012011056v1    C 0 I 6
s aotNan1.NW_018511953v1       715935 485 -   3745603 CTCTTCTAGAAGATCGTTCTGAAAGATAATGCCAACTCGGAACCTAGGAAACCATCCAGTGGGTTTCTGCAGCTTAGGTGGTTCATATCGTCATCAGCACATTTGTTTTCTCTGCCTCAGTTTGCTTATAATGATGTTCTCAGTAGCTGAAATTTGCTGCTTGTGTTTGATTACTGAAGCA-------TTTTCTTTT---TGTCATGG-GTATATAAACATTTTTATTTTAACAAGTGTTAGAATTTTTCCTCTGCTTTTGTGGGCTCTACCTTAGCTACTTGGTTGTCTATTTATAAAATGATTAGCAGGGAACAG-------------------------------TGTGTGTGCACATTTTAAGTATCTTT---TGTTGTCAGAGCAGTTAGAATTTTATTAAGGCATTATATGCTAATTCTGTCAATTTACTTCATTCTCCA-CCCACATTTATTGAACAGCAAAGTATGAAAGTAATGTGTCCCATAACTGGCCTTCAGGAGAATT-ATAACTGCTGTATCTCTGAA
i aotNan1.NW_018511953v1    C 0 I 51
s otoGar3.GL873530            6741931 486 -  36342412 CTGTTCTAGATGATCATTCTGAGA-----------CTCAGAACCAAAGAAACTATCCAGTGGGTTTCTGCAGCTCAGGTGGTTCAAATCCTCTCTAGCACCTTTGTTTTCTCTGCCTCAGTTCACTTAGAGTGATGTTCTGAGTAGCTGTAATTTGTTGCCTGTGTTTGGATACTTAAGCA---------TTTTTTTAAATCATAGGGTATATTTATGCATTTTTCTTTAACCAAGTGTTAATACTTTTACTCAGATTTTGTGGGTTCTGGGTTAGGTACTTGATTGCTTACTTGTAAAATGATTAGCAAGGAATAG-----------------------TATATAGTTCTGTATATATATTTTTAGTGATTTTTAATATGGTCAGAGCACTTAGAATTTTATTAAGGTAGTATATAGTAATTTTGCCAGTTTACTTCATTCTTCATCTC-CATTTATTGAACAGCAAAGTGTGAAAGTA--TTGTTCTATAATTGGTCTCCAGAAGAATTAACAACTGCTGTGTCTCTGAA
i otoGar3.GL873530          I 240 I 66
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I

a score=160231.000000
s hg38.chr15_KI270850v1_alt    236965 315 +    430880 Attctt--------ttttttattttttattttgagatggagtctcactctatcacccaagctggagtacagtggtgcaatcttggctcactggaacctctgctgcccaggttcaagcaattctcctgcctcagcctcctgagtggctgggattacaggcacctgccaccacacctggctaatttttgtagctttagtagagacaggtttcaccatgttggccaggctggtcttgaattcctgacctcgtgatctgcctgcctcagcctcccaaagtgctgggattacaggtgtgagctaccgcacctggcTGAACTTTCAAGG
s panTro5.chrY               25698715 323 -  26350515 ATTCtttatttttattttttattttttattttgagatggagtctcactatatcacccaggccagagtacagtggtgcaatcttggctcactggaacctctgcttcccagattcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcacctgccaccgcacctggctaatttttgtagctttagtagagacaggtttcaccatgttggccaggctggtcttgaattcctgacctcgtgatctgcctgcctcagcctcccaaagtgctgagattacaggtgtgagctaccgcacctggcTGAACTTTCAAGA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       335620 312 +    378907 Attctt--------ttttttattttttattttgagatggagtctcactctatcacccaagctggagtacagtggtgcaatcttggctcactggaacctctgctgcccaggttcaagcaattctcctgcctcagcctcctgagtaggtgggattacaggcacctgccaccacacctggctaatttttgtagctttagtagagacaggtttcaccatgttggccaggctggtcttgaattcctgacctcgtgatctgcctgcctcagcctcccaaagtgctgggattacaggtgtgagctaccgcacctggcTGAACTTTCA---
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18836436 309 - 121039945 Attttt--------t------ttttttatttttagatggagtctcattctatcacccaggccggagtacactggtgcgatcttgcctcactggaacctgtgccgcccaggttcaagcgattttcctgcctcagcctcctgagtagctgggattacaggcacctgccaccacacctggctaatttttgtagttttagtagagacaggtttcaccatgttggccaggctggtcttgaattcctgacctcgtgatctgcctgcctcggcctcccaaagtgctgggattacaggtgtgagctaccacgcccggcTGAACTTTCCAGA
i nomLeu3.chr6              C 0 C 0
e aotNan1.NW_018511953v1       716420  51 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6742417  66 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e macNem1.NW_012011056v1      6234352   6 -   6271500 I
e macFas5.chr7               65354115 18636 + 171882078 I
e rheMac8.chr7               62574398  47 + 169600520 I

a score=23470.000000
s hg38.chr15_KI270850v1_alt    237280 25 +    430880 AGAAGTTTGTGCATCAGTTTTCAAA
s panTro5.chrY               25699038 25 -  26350515 AGAAGTTTGTGCATCAGTTTTCAAA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       335932 25 +    378907 AGAAGTTTGTGCATCAGTTTTCAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18836745 25 - 121039945 AGAAGTTTGTGCATCAGTTTTCAAA
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      6234358 25 -   6271500 AGAAGTTTGTGCATCAGTTTTCAAA
i macNem1.NW_012011056v1    I 6 I 16
e aotNan1.NW_018511953v1       716420 51 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6742417 66 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I
e rheMac8.chr7               62574398 47 + 169600520 I

a score=7656.000000
s hg38.chr15_KI270850v1_alt    237305 15 +    430880 AAATTATGATATCAA
s panTro5.chrY               25699063 15 -  26350515 AAATTATGATATCAA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       335957 15 +    378907 AAATTATGATATCAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18836770 15 - 121039945 AAATTATGTTATCAA
i nomLeu3.chr6              C 0 C 0
e aotNan1.NW_018511953v1       716420 51 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6742417 66 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e macNem1.NW_012011056v1      6234383 16 -   6271500 I
e macFas5.chr7               65354115 18636 + 171882078 I
e rheMac8.chr7               62574398 47 + 169600520 I

a score=29220.000000
s hg38.chr15_KI270850v1_alt    237320 17 +    430880 AAGATAGCTGTGCCCTA
s panTro5.chrY               25699078 17 -  26350515 AAGATAGCTGTGCCCTA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       335972 17 +    378907 AAGATAGCTGTGCCCTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18836785 16 - 121039945 AA-ATAGCTGTGCCCTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62574445 17 + 169600520 AAGATAGCTGTGTCCTA
i rheMac8.chr7              I 47 C 0
s macNem1.NW_012011056v1      6234399 17 -   6271500 AAGATAGCTGTGTCCTA
i macNem1.NW_012011056v1    I 16 C 0
s aotNan1.NW_018511953v1       716471 17 -   3745603 AAGATAGCTGTGTCCTA
i aotNan1.NW_018511953v1    I 51 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6742417 66 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616  0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012002657v1      1855067  0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I

a score=347325.000000
s hg38.chr15_KI270850v1_alt    237337 175 +    430880 CATTTGGAAAGATACAAAAACTGAACATACTGGCAGGCAGTTTTGCTTGCTGGTGCTTGAGATAGAGGCACACATTGGTCTC--AGTGGAATT-ATGGAGAAAAATAGAT----AAAGTTATTTCTAAATAAGAC-----CAAAAAATCCTTTTCTTAAGCAGTGACAGGTAAAGAGGTTGTCTTGG
s panTro5.chrY               25699095 175 -  26350515 CATTTGGAAAGATACAAAAACTGAACATACTGGCAGGCAGTTTTGCTTGCTGGTGCTTGAGATAGAGGCACACATTGGTCTC--AGTGGAATT-ATGGAGAAAAATAGAT----AAAGTTATTTCTAAATAAGAC-----CAAAAAATCCTTTTCTTAAGCAGTGACAGGTAAAGAGGTTGTCTTGA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       335989 176 +    378907 CATTTGGAAAGATGCAAAAACTGAACATACTGGCAGGCAGTTTTGCTTGCTGGTGCTTGAGATAGAGCCACACATTGGTCTC--AGTGGAATTAATGGAGAAAAATAGAT----AAAGTTATTTCTAAATAAGAC-----CAAAAAATCCTTTTCTTAAGCAGTGACAGGTAAAGAGGTTGTCTTGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18836801 179 - 121039945 CATTTGGAAAGATACAAAAACTGAACATACTGGCAGGCAGTTTTGCTTGCTGGTGCTTGAGATAGAGGCACACATTGGTCTC--AGTGGATTT-ATGGAGAAAAATAGATACAGAAAGTTATTTCTAAATAAGAC-----CCAAAAATCCTTTTCTTAAGCAGTGACAGGTAAAGAGGTTGTCTTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62574462 178 + 169600520 TATTTGGAAAGATACAAAAACTGAACATTCTAGCAGGCAGTTTTGCTTGCTGATGCTCGAGATAGAGCCACACATTGATCTC--AGTGGATTT-ATGGAGAAAAATAGATACAGAAAGTTACTTCTAAATAAGAC-----CAAAAAATCCTTTTCTTAAACAGTGACAGGTAAAGAGGTTGCCTTG-
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      6234416 178 -   6271500 TATTTGGAAAGATACAAAAACTGAACATTCTAGCAGGCAGTTTTGCTTGCTGATGCTCGAGATAGAGCCACACATTGATCTC--AGTGGATTT-ATGGAGAAAAATAGATGCAGAAAGTTACTTCTAAATAAGAC-----CCAAAAATCCTTTTCTTAAACAGTGACAGGTAAAGAGGTTGCCTTG-
i macNem1.NW_012011056v1    C 0 C 0
s aotNan1.NW_018511953v1       716488 180 -   3745603 CATTTGGGAAGATACAAAAACTGACCATTCTGGCAGGAAGTTTTGCTTGCTGGTGCTTGAGACAGAGCCACACAATGGTCTC--AGTGGATTT-ATGGAGAAAAATAGATACAGAAAGTTATTTCTAAATAAGACAACAACAAAAAAATC----CTTAAGCAGTGACAGGTAAAGAGGTTGGCTTGG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6742483 149 -  36342412 CATTTGGAAAGACAGTAAAACTGAGCATTCTGTCAAGCAGTTTTGCTGGCTGATGCTTGAG--AGAGCCACACATTGGTCTCTTAGTGGATTT-ATGTAGAAAAATATAG----AAATTTATTT-------------------------------TTAAGCAGTCACAGGCAAAGAAGTTGGCTTGA
i otoGar3.GL873530          I 66 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012117110v1        13616   0 -   1784207 C
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I

a score=1160607.000000
s hg38.chr15_KI270850v1_alt    237512 454 +    430880 CTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGTGGGA-TGGTAGTGGTGATAAACTTGCTGGAAATTTGTCTGCTTATAGTAACCTTTGTGGTAGCTGTCACAGACAACTTCATCCTCACAGGCCTTGAAATTAGTATAAAACTAAC---AGAATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTCTGT-------------------GTTTTCATTACTG------GTGAAAAAGAGCAGTATTAGAAGCACTTACACATTCTATAGAAGGAACACTGCCTGAATTTATATTGCGATTTTTGAGCACCATTAACTGTATAAAAAC--------AGGCATATT-GTAGGTAA----TATTTTAAAGACA-AACA----GAAAATTTATCTTTTCAAGATGGATCTAAAA----------CTTATCAAAATTACAAAATTTAAAAC--GTGATTGA---AAAATATTAATGTATAGGTTTAAATATTGG
s panTro5.chrY               25699270 463 -  26350515 CTAACCTTCAATTGTGTTGCCCTTGCTTGAGACAGTTTTATGGTGGGA-TGGTAGTGGTGATAAACTTGCTGGAAATTTGTCTGCTTATAGTAACCTTTGTGGTAGCTGTCACAGACAACTTCATCCTCACAGGCCTTGAAATTAGTATAAAACTAAC---AGAATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTCTGT-------------------GTTTTCATAACTG------GTGAAAAAGAGCAGTATTAGAAGCACTTACACATTCTATGTAAGGAACACTGCCTGAATTTATATTGCG-CTTTTGAGCACCATTAACTGTTTAAAAACAATATTTAAAAAATATT-GTAGGTAA----TATTTTAAAGACA-AACA----GAAAATTTCTATTTTCAAGATGGATCTAAAA----------CTTATCAAAATTACAAAATTTAAAACATGTGATTGA---AAAATATTAATGCATAGGTTTAAATATTGG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       336165 455 +    378907 CTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGTGGGGTTGGTAGTGGTGATAAACTTGCTGGAAATTTGTCTGCTTATAGTAACCTTTGTGGTAGCTGTCACAGACAACTTCATCCTCACAGGCCTTGAAATTAGTATAAAACTAAC---AGAATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTCTGT-------------------GTTTTCATAACTG------GTGAAAAAGAGCAGTATTAGAAGCACTTACACATTCTATATAAGGAACACTGCCTGAATTTATATTGCGATTTTTGAGCACCATTAACTGTTTAAAAAC--------AGGCATATT-GTAGGTAA----TATTTTAAAGACA-AACA----GAAAATTTATCTTTTCAAGATGGATCTAAAA----------CCTATCAAAATTACAAAATTTAAAAC--GTGATTGA---AAAATATTAATGCATAGGTTTAAATATTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18836980 459 - 121039945 CTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGTGGGGATGGTAGTGGTGATAAACTTGTTGGAAATTTGTCTGCTTATAGTAACCTTTGTGGTAGCTGTCACAGACAACTTCATCCTCACAGGCCTTGAAATTAGTATAAAACTAAC---AGAATAGAGGAGAAACAAAGGTCCTGAATAATTAGATGCTTAGATAATTGTTCTGT-------------------GTTTTCATAACCA------GTGAAAAAGAGCAGTATTAGAAGC----ACACATTCTATGTAAGGAACACTGCCTGAATTTATATTGCAATTTTTGAGCACCATTCACTGTTTAAAAAC--------AGGCATATT-GTAGGTAA----TATTTTAAAGACA-AATA----GAAAATTTATCTTTTCAAGATGGATCTAAAGT----TTAACCTTATCAAAATTACAAAATTTAAAGCATGTGATTGA---AAAATATTAATGCATAGGTTTAAATATTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62574640 461 + 169600520 CTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGTGGGGATGGTAGCGGTGATAAACTTATTTGAAATTTGTCTGCTTATAGTAACCTTTGTGGTAGCTGTCACAGACAACTTCATCCTCACAGGCCTTAAAATTACTATAAAACTAAT---AGAATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTC--T-------------------GTTTTTATAACCG------GTGAAAAAGAGCAGTATTAGAAGCAATTACACATCCTATGTAAGGAACACTGCCTGAATTTATATTGCGATTTTTGAGCACCATTCACTGTTTGAAAGC--------TGGCATATT-GTAGGTCA----TATTTTAAAGACA-AATA----AAACACTTATCTTTTCAAGATGGATCTAAAGC----TTAACCTTATCAAAATTACAAAATTTAAAGCATGTGATTGA---AAAATATTAATGCATAGATTTAAATATTGG
i rheMac8.chr7              C 0 I 3
s macNem1.NW_012011056v1      6234594 461 -   6271500 CTAACCTTGAATTGTGTTGCCCTTGATTGAGACAGTTTTATGGTGGGGATGGTAGCGGTGATAAACTTATTTGAAATTTGTCTGCTTACAGTAACCTTTGTGGTAGCTGTCACAGACAACTTCATCCTCACAGGCCTTAAAATTACTATAAAACTAAT---AGAATGGAGGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTC--T-------------------GTTTTCATAACCG------GTGAAAAAGAGCAGTATTAGAAGCAATTACACATCCTATGTAAGGAACACTGCCTGAATTTATATTGCGATTTTTGAGCACCATTCACTGTTTGAAAGC--------TGGCATATT-GTAGGTCA----TATTTTAAAGACA-AATA----AAACACTTATCTTTTCAAGATGGATCTAAAGC----TTAACCTTATCAAAATTACAAAATTTAAAGCATGTGATTGA---AAAATATTAATGCATAGGTTTAAATATTGG
i macNem1.NW_012011056v1    C 0 I 3
s colAng1.NW_012116021v1       297322 463 +   4111199 CTAACCTTGAATTATGTTGCCCTTGATTGAGACAGTTTTGTGGTGGGGATGGTAGTGGTGATAACCTTGTTTGAAATTTGTCTGCTTATAGTAACCTTGGTGGTGGCTGTCACAGACAACTTCATCCTCACAGGCCTTAAAATTACTATAAAACTAAT---AGAATGGAAGAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTCTGT-------------------GTTTTCATAACTG------GTGAAAAAGAGCAGTATTAAAAGCAATTACACACTCTATGTAAGGAACACTGCCTGAATTTATATTGCGATTTTTGAGCACCGTTCACTGTTTAAAAGC--------TGGCATATT-GTAGGTCA----TATTTTAAAGACA-AATA----GAACACTTATCTTTTCAAGATGGATCTAAAGC----TTAACCTTATCAAAATTACAAAATTTAAAGCATGTGATTGA---AAAATATTAATGCATAGGTTTAAATATTGG
i colAng1.NW_012116021v1    C 0 I 3
s aotNan1.NW_018511953v1       716668 465 -   3745603 TTAGCCTTGAGTCGTATTCCCCTCGATTAAGACAGTTTTATGGTGGGGATGGTAGCAGTGATGAACTTGCTTGAAATTTGTCCACTTACAATAATCTTTATGGTAGCTGTCACAGACAACTTCATCCTCACAGTACTTACAATTACTATAAAACTAAT---AGAATGGAGAAGAAACAAAGGACCTGAATAATTAGATGCTTAGATAATTGTTCTGT-------------------GTTTTCATAACTG------TGGTGAAAGAGCAGTGCTAGAAGCACTTAAACATTGTATGTGTGGAAAACTGCCTGAATTTATATTGGAATTTTGGAGCACCATT----------AAAC--------TGGCATATT-GTAGGTCATATTTATTTTAAAGAGC-AATAGTAGGAAAACTTATCTTTTCGAGATGGATATAAAGCTTAGTTAACCTTATCAAAATTACAAAACTTAAAGCATGTGAATTG---AAAATATTAATGCATAGGTTTAAATATTAG
i aotNan1.NW_018511953v1    C 0 I 3
s otoGar3.GL873530            6742632 483 -  36342412 TGAACTTTGAGCTGTGTTGCCCCATGTTAGGACAAGTTTATGGTGGGGATGG---------TGAACTTGTTTGAAG-TTGTCTGTTTACAGTAACCTTTATGTTGGCTGTCATGGACAACTTCATCCT-GCAAGCCTTAAAATCATTGCTAAACTAATAGAAGAATGGAGTAGAAACAAAGGACCTAAATAATTAGATGCTTGGACAATTTTTTTGTATGTACTTAAGTCTTTAAAATTTTCAAAACTGTGGTTTTTAAAAAAGAGCTGTGTTAGAAGC----AAACATCCTGT-TAAGGAAAACTGCCTG-ACTCCTATTGGGATTTTTGAGCATCATTTAATGTTTAAAAAT--------TGGCATATTAACAGGTCA----TTTAAAAAAGCCATAGTA----AGAAAACTATCTTTTCAAGATAGATACAAAGCCCAGTTAACCTTATAAAAATCAGAAAACTTGAAGTGTATGAAAGATTGAAAATATTAATATATAGGTTTAAGAATTGG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       346000 18928 -   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012002657v1      1855067   0 -   1987038 I
e macFas5.chr7               65354115 18636 + 171882078 I

a score=155530.000000
s hg38.chr15_KI270850v1_alt    237966 38 +    430880 TCATTTTAAATGTCTTTCAAAA-----TAGATTGTCTCTTA----AA
s panTro5.chrY               25699733 38 -  26350515 TCATTTTAAATGTCCTTCAAAA-----TAGATTGTCTCTTA----AA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       336620 38 +    378907 TCATTTTAAATGTCTTTCAAAA-----TAGATTGTCTCTTA----AA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18837439 38 - 121039945 TCATTTTAGATGTCTTTCAAAA-----TAGATTGTCTCTTA----AA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62575104 36 + 169600520 TCATTTTAAATGTCTTTCAAAA-----TAGGTTGACTCTTA------
i rheMac8.chr7              I 3 C 0
s macFas5.chr7              106508229 36 - 171882078 TCATTTTAAATGTCTTTCAAAA-----TAGGTTGACTCTTA------
i macFas5.chr7              n 18636 C 0
s macNem1.NW_012011056v1      6235058 38 -   6271500 TCATTTTAAATGTCTTTCAAAA-----TAGGTTGACTCTTAAA----
i macNem1.NW_012011056v1    I 3 I 2012
s cerAty1.NW_012001384v1      5129187 36 +   5160157 TCATTTTAAATGTCTTTCAAAA-----TAGGTTGACTGTTA------
i cerAty1.NW_012001384v1    I 8871 C 0
s manLeu1.NW_012105520v1      1092755 36 +   1458659 TCATTTTAAATGTCTTTCAAAA-----TAGATTGACTGTTA------
i manLeu1.NW_012105520v1    I 8981 C 0
s colAng1.NW_012116021v1       297788 38 +   4111199 TCATTTTAAATGTCTTTCAAAA-----TAGATTGACTCTTA--AA--
i colAng1.NW_012116021v1    I 3 C 0
s aotNan1.NW_018511953v1       717136 38 -   3745603 TCATTTAAGATGTCTTTCCAGG-----TAGATTGTCTCTTA----AA
i aotNan1.NW_018511953v1    I 3 C 0
s otoGar3.GL873530            6743115 41 -  36342412 TCATTTTAAA--TCTTTCAAAATACTGTAGATTGTCTTTTA----AA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              21075958  0 -  24206276 I

a score=503648.000000
s hg38.chr15_KI270850v1_alt    238004 149 +    430880 TATTCAACTGAACAAACTTTGAACATGTTGTAGAGTTTGTGCCGAAGGTTAAATTTCCTGGGGTGATGG--ATAttttgtaatatggaaaacaaaaccttcttattttaagaaatttagaaaacttttaggcaaaact---agaaaatattacc
s panTro5.chrY               25699771 149 -  26350515 TATTAAACTGAACAAACTTTGAACATGTTGTAGAGTTTGTGCCGAAGGTTAAATTTCCTGGGGTGATGG--ATATTTTGTAATATGGACAACAAAACCTTCTTATTTTAAGAAATTTAGAAAACTTTTAGGCAAAACT---AGAAAATATTACC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       336658 149 +    378907 TATTAAACTGGACAAACTTTGAACATGTTGTAGAGTTTGTGCCGAAGGTTAAATTTCCTGGGGTGATGG--ATATTTTGTAATATGGAAAACAAAACCTTCTTATTTTAAGAAATTTAGAAAACTTTTAGGCAAAACT---AGAAAATATTACC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18837477 146 - 121039945 TATTAAACTGAACAAACTTTGAACATAATGTTGAGTTTGTGCTGAAGGTTAAATTTCCTGGGGTGATGG--ATATTTTATAATATGTAAAACAAAGC---CTTATTTTAAGAAATTTAGAAAACTTTTAGGCAAAACT---AGAAAATATTACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62575140 139 + 169600520 -----AACTGAACAAATTTTGAACACTATGTAGAGTTTGTGCTGAAGGCTAAATTTCCCGGGGTGATGG--CTATTTTATAATATGGAAAGCAAAACCTTC-----TTAAGAAATTTAGCAATTTTTTAGGCAAAACT---AGAAAATACTACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106508265 139 - 171882078 -----AACTTAACAAATTTTGAACACTATGTAGAGTTTGTGCTGAAGGCTAAATTTCCCGGGGTGATGG--CTATTTTATAATATGGAAAGCAAAACCTTC-----TTAAGAAATTCAGCAATTTTTTAGGCAAAACT---AGAAAATATTACC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5129223 137 +   5160157 -----AACTGAACAAATTTTGAACACTATGTAGAGTTTGTGCTGAAGGTTACATTTCCTGGGGTGATAG--CTATTTTATAATAAG--AAGCAAAATCTTC-----TTAAGAAATTTAGCAATTTTTTAGGCAAAACT---AGAAAATATTACC
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1092791 139 +   1458659 -----AACTGAACAAATTTTGAATACTATGGAGAGTTTGTGCTGAAGGTTAAATTTCCTGGGGTGATAG--CTATTTTATAATACAGAAAGCAAAACCTTT-----TTAAGAAATTCAGCAATTTTTTAGGCAAAACT---AGAAAATATTACC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       297826 137 +   4111199 -------CTGAACAAATTTTGAACACTATGTAGAGTTTGTGCTGAAGGTTAAATTTCCTGGGGTGATGG--CTATTTTATAATATAGAAAGCAAAACCTTC-----TTAAGAAATTTAGCAATTTTTTAGGCAAAACT---AGAAAATATTACC
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1       717174 148 -   3745603 TATTAAACTGAACAAACTTTGAACAAGATGTAGAGTTTGTGGTGAAGGTTAAGTTTCCTGGGGTGGTGG--GTATTTTATAATATGGAAAACAAAACCTTCTTATTTTAAGAAAGTAAAAAAAA-TTTAGTCAAAACT---AGGAAATATTACC
i aotNan1.NW_018511953v1    C 0 I 348
s otoGar3.GL873530            6743156 144 -  36342412 TATT-AAGTGAACAAAC-CTGAACA---TGGAGAGTTTGT---GAAGATTAAGTTTCCAGGGGTAGTGGTAGAAATATATAATATAGAACACAAGACATTCTTAC-GTAAGGAATTTAGAAATC-TGTaagaagaactgaagaaaaaaatcacc
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macNem1.NW_012011056v1      6235096 2012 -   6271500 I

a score=1639396.000000
s hg38.chr15_KI270850v1_alt    238153 539 +    430880 tatgtaattctaccactcagaaggtgccactgtcagaaatttg-----tatctttcc-agtcatctgctcacctcttttctcctgtgcttgtgtatgtttcctctccctt----aaaaatcagatatttgtttgtaatctgctttttcactcaacagtatTGTAGATCCATGTTATAA---CTTACTCCTCTACATTGCCTTCAGTTATTGTGTGCTTTCTGTTGGATGACTTTACCATGTAGTCAGTCATGTTTTCTGGTACTGAATACATACGGgtatgt--------------------------------------------------------------------------------gtgtgtgtgcgtgcgcgtgtgtgtgcgtATTTTTTTGTAACTTAACTAATGCTTTAGACATCAGTAGGTAGACGTAA----------------------ATCCTTGAAACCTTCC---ACGTGGTGACTTTCAGTTCTCATTGCTGAATTTGTTTCCAGAGATGGAAGAAATTATATTGTATGGGAAc---tttttttttc---ttttttttttctttttttttttgagatgaagtcttgttcttgtcacccaggctggagtgcaatggcgtgat-----ctcactgcaacctccacctcctgggt
s panTro5.chrY               25699920 527 -  26350515 TATGTAATTATACCACTCAGCAGGTGCCACTGTCAGAAATTTG-----TATCTTTCC-AGTCATCTG-----CTCTTTTCTCCTGTGCTTGTATATGTTTCCTCTCCCTT----AAAAGTCAGATATTTGTTTGTAATCTGCTTTTTCACTCAACAGTATTGTAGATCCATGTTATAA---CTTACTCCTCTACATTGCCTTCAGTTATTGTGTGCTTTCTGTTGGATGACTGTACCATGTAGTCAGTCATGTTTTCTGGTACTGAATACATACGGgtatgt--------------------------------------------------------------------------------gtgtgtgtgcgtgcgcttgtgtgtgCATATTTTTTTGTAACTTAACTAATGCTTTAGACATGAGTAGGTAGACCTAA----------------------ATCCTTGAAACCTTCC---ACGTGGTGACTTTCAGTTCTCATTGCTGAATTTGTTTCCAGAGATGGAAGAAATTATATTTTATGGGAAC-----tttttttc---tttttt-----tttttttttttgagttgaagtcttgttcttgttgcccaggctggagtgcaatggcgtgat-----ctcattgcaacctccacctcctgggt
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       336807 526 +    378907 TATGTAATTCTACCACTCAGAAGGTGCCACTGTCAGAAATTTG-----TATCTTTCC-AGTCATCTGCTCACCTCTTTTCTCCTGTGCTTGTATATGTTTCCTCTCCCTT----AAAAATCAGATATTTGTTTGTAATCTGCTTTTTCACTCAACAGTATTGTAGATCCATGTTATAA---CTTACTCCTCTACATTGCCTTCAGTTATTGTGTGCTTTCTGTTGGATGACTGTACCATGTAGTCAGTCATGTTTTCTGGTACTGAATACACACGGgtatgt--------------------------------------------------------------------------------gtgtgtgtgcgtgcgcgtgtgtgtgcgtATTTTTTTGTAACTTAACTAATGCTTTAGACATCAGTAGGTAGACCTAA----------------------ATCCTTGAAACCTTCC---ACGTGGTGACTTTCAGTTCTCATTGCTGAATTTGTTTCCAGAGATGGAAGAAATTATATTGTATGGGAAC---tttttttttc---tttttt-------------tttgagatgaagtcttgttcttgtcgcccaggctggagtgcaatggcgtgat-----ctcactgcaacctccacctcctgggt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18837623 547 - 121039945 TATATAATTCTACCACTCAGAAAGTTCCACTGTCAGAAATTTG-----TATCTTTCC-AGTCAGCTGCTCATCTCTTTTCTCCTATGCTTGTATATGTTTCCTCTCCCTT----AAAAATCAGATATTTGTTTGTAATCTGCTTTTTCACTCAGCAGTATTGTAGATCCATGCTATAA---CTTACTCCTCTCCATTGCCTTCAGTTAGTGTGTGCTTTCTGTTGGATGACTGTACCATGTAGTCCGTCATGTTTTCTGGTACTGAATACAtatgggtatgt--------------------------------------------------------------------------------gtacgtgtgtgtgcgtgcgtgtatgtatATTTCTTTCTACGTTAACTAATGCTTTAGATATCAATAGGTAGACCTAA----------------------ATCCTTGAAACCTTCC---ACGTGGTGACTTTCAGTTCTCATTGCTGAATTTGTTTCTAGAGATGGGAGAAATTATATTGTATGGGAACtttttttcttttc---ttttttttttttttttttttttgagatgaagtcttgttcttgtcgcccaggctggagtgcaatggcatgatctcagctcactgcaacctccacctcctgggt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62575279 548 + 169600520 TATATAATTCTACCACTCAGAAGGTGCCACTATTAGAAATTTG-----TATCTTTCCAAGTCATCTGCTCATCTCTTTTCTCCTATGCTTGTGTATGTTTCCTCTCCCTT----AAAAATCAGATTTTTGTTTGTAATCTGCTTTTTCACTCAACAATATTGTAGATCCACGTCATAA-------CTTCTCTACATTGGCTTCAGTTATTGTGTGCTTTCTGTTGGATGACTGTACCATGTAGTCAGTCATGTTTCCTGGTACTGAATACATAGGGgtatgtgtgtgtgtgcgtgt----------------------------------------------------------------gcgtgtgtgtgcgtgcgcgtgtgtgtgcgtAGTTTTTTCTAACTTAACTAATGATTTAGACATCAATAGGTAGACCTAC----------------------ATCCTTGAAACCTTCC---ACATGGTGACTTTCAATTCTCATTGCTGAATTTGTTTCCAGAGATGGAAGAAATTATATTGTATGGGAAC---ttttttttccctttttttt------------ttttgagatgaagtcttgttcttgtctcccaggctggagtgcaatggcgtgatcacagcttactgcaacctccgcctcttgggt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106508404 533 - 171882078 TATATAATTCTACCACTCAGAAGGTGCCACTATCAGAAATTTG-----TATCTTTCCAAGTCATCTGCTCATCTCTTTTCTCCTATGCTTGTGTATGTTTCCTCTCCCTT----AAAAATCAGATTTTTGTTTGTAATCTGCTTTTTCACTCAACAATATTGTAGATCCACGTCATAA---CTTGCTTCTCTACATTGGCTTCAGTTATTGTGTGCTTTCTGTTGGATGACTGTACCATGCAGTCAGTCATGTTTCCTGGTACTGAATACATAGGGgtatgt--------------------------------------------------------------------------------gtgtgtgtgcgtgcgcgtgtgtgCGCGTATTTTTTTCTAACTTAACTAATGCTTTAGACATCAATAGGTAGACCTAA----------------------ATCCTTGAAACCTTCC---ACGTGGTGACTTTCAATTCTCATTGCTGAATTTGTTTCCAGAGATGGAAGAAATTATATTGTATGGGAAC---ttttttttcc---tttttt------------ttttgagatgaagtcttgttcttgtctcccaggctggagtgcaatggcgtgatcacagctcactgcaacctccgcctcccgggt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5129360 546 +   5160157 TATATAATTCTACCACTCAGAAGGTGCCACTATTAGAAATTTG-----TATCTTTCCAAGTCATCTGCTCATCTCTTTTCTCCTATGCTTGTGTATGTTTCCTCTCCCTT----AAAAATCAGATTTTTGTTTGTAATCTGCTTTTTCACTCAACAATATTGTAGATCCACGTCATAA-------CTTCTCTACATTGGCTTCAGTTATTGTGTGCTTTCTGTTGGATGACTGTACCATGTAGTCAGTCATGTTTCCTGGTACTGAATACATAGGGgtatgtgtgtgtgtgcgtgt----------------------------------------------------------------gcgtgtgtgtgcgtgcgcgtgtgtgtgcgtAGTTTTTTCTAACTTAACTAATGCTTTAGACATCAATAGGTAGACCTAC----------------------ATCCTTGAAACCTTCC---ACATGGTGACTTTCAATTCTCATTGCTGAATTTGTTTCCAGAGATGGAAGAAATTATATTGTATGGGAAC---ttttttttccc--tttttt------------ttttgagatgaagtcttgttcttgtctcccaggctggagtgcaatggcgtgatcacagcttactgcaaccttcgcctcttgggt
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1092930 613 +   1458659 TATATAATTCTACCACTCAGAAGGTGCCACTATTAGAAATTTG-----TATCTTTCCAAGTCATCTGCTCATCTCTTTTCTCCTTTGCTTGTGTATGTTTCCTCTCCCTT----AAAAATCAGATTTTTGTTTGTAATCTGCTTTTTCACTCAATAATATTGTAGATCCACGTCATAA---CTTACTTCTCTACATTGGCTTCAGTTATTGTGTGCTTTCTGTTGGATGACTGTACCATGTAGTCAGTCATGTTTCCTGGTACTGAATACATAGGGGTATGTGTGTGTGTGCGTGTGCGTGTGTGTGCGTGCGCGTGTGTGTGCGTGCGCGTGTGTGTGCGTGTGCGTGTGTGTGCGTGCGCGTGTGTGTGCGTGCGCGTGTGTGTGCGTATTTTTTTCTAACTTAACTAATGCTTTAGACATCAATAGGTAGACCTAA----------------------ATCCTTGAAACCTTCC---ACGTGGTGACTTTAAATTCTCATTGCTGAATTTGTTTTCAGAGATGGAAGAAATTATATTGTATGGGAAC---ttttttttcc---tttttt------------ttttgagatgaagtcttgttcttgtttcccaggctggagtgcaatggcgtgatcacagctcactgcaacctccgcctcccgggt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       297963 535 +   4111199 TATATAATTCTACCACTCAGAAGGTGCCACTATCAGAAATTTG-----TATCTTTCCAAGTCATCTGCTCATCTCTTTTCTCCTATGCTTGTGTATGTTTCCTCTCCCTT----AAAAATCAGATTTTTGTTTGTAATCTGCCTTTTCACTCAACAATATTGTAGATCCATGTCATAA---CTTACTTCTCTACATTGCCTTCAGTTATTGTGTACTTTCTGTTGAATGACTGTACCATGTAGTCAGTCATGTTTCCTGGTACTGAATACATAGGGATAtgt--------------------------------------------------------------------------------gtgtgtgtgcgtgcgcgtgtgtgtgcgtATTTTTTTCTAACTTAACTAATGCTTTGGACATCAATAGGTAGACCTAA----------------------ATCCTTGAAACCTTCC---ACGTGGTGACTTTCAATTCTCATTGCTGAATTTGTTTCCAGAGATGGAAGAAATTATATTGTATGGGAAC---ttcttttttccc-tttttt------------ttttgagacgaagtcttgttcttgtctcccaggctggagtgcaatggtgtgatcacagctcactgcaacctccacctcccgggt
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530            6743300 420 -  36342412 --tgtcatcttaccactcagaagataccactctc--aattttggtatatatctttt--agctgtct---------ctttctcttacacttatatttacTCCCTCCCTCTTCTTAAAAGATCAGATTAT--TTTGTAATCT---TTCTTACTGCACAATATTGTAGGTTTGTGTCATTAGCACACCGTCCTGTACAGTGGCTCCAATTGTTGT--------------ATGAGTGTACTATCTAGTCAGTCTTGTCTCCTAGTACTGCACATATAA----ATGT----------------------------------------------------------------------------------------------------GTTTGGGTTTTTTTTTCTGTCATAAATAATGCTTTGAACATTAATAGCTAGAGCTAATTACTTGTGAATGTAGATCATGTTCTTTGAAACCTTCCTAGAAGTGGTGACTTTAATTTCTTATTGCTGAATTGGTCTCT---------AGAAATTATATTGTATAGGAAT---T------------GTTTTT--------------------------------------------------------------------------------------CCTTCTAGGT
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1       717322 348 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macNem1.NW_012011056v1      6235096 2012 -   6271500 I

a score=17028.000000
s hg38.chr15_KI270850v1_alt    238692 5 +    430880 tcaag
s panTro5.chrY               25700447 5 -  26350515 tcaag
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       337333 5 +    378907 tcaag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18838170 5 - 121039945 tcaag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62575827 5 + 169600520 tcaag
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              106508937 5 - 171882078 tcaag
i macFas5.chr7              C 0 I 1
s cerAty1.NW_012001384v1      5129906 5 +   5160157 tcaag
i cerAty1.NW_012001384v1    C 0 I 1
s manLeu1.NW_012105520v1      1093543 5 +   1458659 tcaag
i manLeu1.NW_012105520v1    C 0 I 1
s colAng1.NW_012116021v1       298498 5 +   4111199 tcaag
i colAng1.NW_012116021v1    C 0 I 1
e aotNan1.NW_018511953v1       717322 348 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6743720 0 -  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              21075958 0 -  24206276 I
e macNem1.NW_012011056v1      6235096 2012 -   6271500 I

a score=600.000000
s hg38.chr15_KI270850v1_alt    238697 1 +    430880 c
s panTro5.chrY               25700452 1 -  26350515 c
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       337338 1 +    378907 c
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18838175 1 - 121039945 c
i nomLeu3.chr6              C 0 C 0
e aotNan1.NW_018511953v1       717322 348 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6743720 0 -  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       298503 1 +   4111199 I
e manLeu1.NW_012105520v1      1093548 1 +   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e cerAty1.NW_012001384v1      5129911 1 +   5160157 I
e macNem1.NW_012011056v1      6235096 2012 -   6271500 I
e macFas5.chr7              106508942 1 - 171882078 I
e rheMac8.chr7               62575832 1 + 169600520 I

a score=110477.000000
s hg38.chr15_KI270850v1_alt    238698 60 +    430880 aattctcctgcctcagcctcccgagtagctgagattacaggcgcatgccaccatgcctgg
s panTro5.chrY               25700453 60 -  26350515 aattctcctgcctcagcctcccgagtagctgagattataggtgcatgccaccatgcctgg
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       337339 60 +    378907 aattctcctgcctcagcctcccgagtagctgagattacaggcgcatgccaccatgcctgg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18838176 60 - 121039945 aattctcctgcctcagcctcccaagtagctgagattacaggcgcatgccaccatgcctgg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62575833 60 + 169600520 gattctcctgcctcggcctcccaagtagctgggattacaggcacgtgccaccatgcctgg
i rheMac8.chr7              I 1 I 306
s cerAty1.NW_012001384v1      5129912 60 +   5160157 gattctcctgcctcggcctcccaagtagctgggattacaggcacgtgccaccatgcctgg
i cerAty1.NW_012001384v1    I 1 I 306
s colAng1.NW_012116021v1       298504 60 +   4111199 gattctcctgcctcggcctcccaagtagctgggattacaggtgcgtgccaccatgcctgg
i colAng1.NW_012116021v1    I 1 C 0
e aotNan1.NW_018511953v1       717322 348 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6743720  0 -  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548  1 +   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e macNem1.NW_012011056v1      6235096 2012 -   6271500 I
e macFas5.chr7              106508942  1 - 171882078 I

a score=2100.000000
s hg38.chr15_KI270850v1_alt    238758 1 +    430880 c
s panTro5.chrY               25700513 1 -  26350515 c
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       337399 1 +    378907 c
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18838236 1 - 121039945 c
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62576199 1 + 169600520 c
i rheMac8.chr7              I 306 C 0
s cerAty1.NW_012001384v1      5130278 1 +   5160157 c
i cerAty1.NW_012001384v1    I 306 C 0
s colAng1.NW_012116021v1       298564 1 +   4111199 c
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1       717322 348 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6743720 0 -  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548 1 +   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e macNem1.NW_012011056v1      6235096 2012 -   6271500 I
e macFas5.chr7              106508942 1 - 171882078 I

a score=305281.000000
s hg38.chr15_KI270850v1_alt    238759 129 +    430880 taatttttgtatttttagtagaaacggagtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatttgcccacttcagcctcccaaagtgttgggaatacaggtgtgagccgctgtg-
s panTro5.chrY               25700514 129 -  26350515 taatttttgtatttttagtagagacggagtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatttgcccacttcagcctcccaaagtgttgggaatacaggtgtgagccactgtg-
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       337400 129 +    378907 taatttttgtatttttagcagagacggagtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatttgcccacttcagcctcccaaagtgtttggaatacaggtgtgagccactgtg-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18838237 130 - 121039945 taatttttgtatttttagtaaagacggagtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatttggccacctcggcctcccaaagtattgggattacaggtgtgagccactgtac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62576200 129 + 169600520 taatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacttcaggtgattttcccacctcagcctcccaaagtgttgggattacaggcgtgagcctctgtg-
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      6237108 129 -   6271500 taatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacttcaggtgattttcccacctcagcctcccaaagtgttgggattacaggcgtgagcctctgtg-
i macNem1.NW_012011056v1    I 2012 C 0
s cerAty1.NW_012001384v1      5130279 129 +   5160157 taatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcaaactcctgacttcaggtgattttcccacctcagcctcccaaagtgttgggattacaggcgtgagtctctgtg-
i cerAty1.NW_012001384v1    C 0 C 0
s colAng1.NW_012116021v1       298565 129 +   4111199 taatttttgtatttttagtagagacgggctttcaccatgttggccaggctggtcttgaactcctgactttaggtgattttcccacctcagcctcccaaagtgttgggattacaggcgtgagcctctgtg-
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1       717322 348 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6743720   0 -  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548   1 +   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macFas5.chr7              106508942   1 - 171882078 I

a score=436557.000000
s hg38.chr15_KI270850v1_alt    238888 160 +    430880 cccagcc-TTTTTTTCATCTCAGTACCAGCTTTTATTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAATGAAATGGGCATTCTTACAGTCATGGCAAAAAATATAATTATCTTTGACTTTCTAGAAAGTAGTTTGGCTTTCTAGAAACTTGTTTGAAT
s panTro5.chrY               25700643 161 -  26350515 cccagccTTTTTTTTCATCTCAGTACCAGCTTTTATTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAATGAAATGGGCATTCTTACAGTCATGGCAAAAAATATAATTATCTTTGACTTTCTAGAAAGTAGTTTGGCTTTCTAGAAACTTGTTTGAAT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       337529 160 +    378907 cccggcc-TTTTTTTCATCTCAGTACCAGCTTTTAGTTATCAGGTTGGTAAAAATGTTAGAAAGTGTGCAATGAAATGGGCATTCTTACAGTCATGGCAAAAAATATAATTATCTTTGACTTTCTAGAAAGTAGTTTGGCTTTCTAGAAACTTGTTTGAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18838367 160 - 121039945 ccCAGCA-TTTTTTTCATCTCAGTACCAGCTTTTATTTATCAGATTGGTAAAAATGTTAGAAAGTATGCAATGAAATGGGCATTCTTACAGTCATGGCAAAAAATATAATTATCTTTGACTTTCTAGAAAGTAGTTTGGCTTTCTAGAAACTTGTCTGAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62576329 160 + 169600520 cccagcc-TTTTTTCCTTCTTAGTACCAGCTTTTATTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAATGAAATGGGCATTCTTACAGTCATGGCAAAAAATATAATTATCTTTGACTTTCCAGAAAGTAGTTTGGCTTTCTAGAAACTTGTCTGAAC
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      6237237 160 -   6271500 cccagcc-TTTTTTCCTTCTCAGTACCAGCTTTTATTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAATGAAATGGGCATTCTTACAGTCATGGCAAAAAATATAATTATCTTTGACTTTCCAGAAAGTAGTTTGGCTTTCTAGAAACTTGTCTGAAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5130408 160 +   5160157 cccaacc-TTTTTTTCTTCTCAGTACCAGCTTTTATTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAATGAAATGGGCATTCTTACAGTCATGGCAAAAAATATAATTATCTTTGACTTTCCAGAAAGTAGTTTGGCTTTCTAGAAACTTGTCTGAAC
i cerAty1.NW_012001384v1    C 0 C 0
s colAng1.NW_012116021v1       298694 160 +   4111199 cccagcc-TTTTTTTCTTCTCAGTACCAGCTTTTATTTATCAGATTGGTAAAAATGTTAGAAAGTGTGCAGTGAAATTGGCATTCTTACAGTCATGGCAAAAAATATAATTATCTTTGACTTTCCAGAAAGTAGTTTGGCTTTCTAGAAACTTGTCTGAAC
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530            6743720 124 -  36342412 ------------------------ACCAGCTT----TTATCAGATTGGAAAAAATGTTAGCAAGTGTGCAGTGAAGTGGGTGTTCTCATAGCCATGGCAGGAAGTATACTT-TTTATGACTTTTTAGAAAGTGATTTG--TCTCCATATACTGGC------
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1       717322 348 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548   1 +   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macFas5.chr7              106508942   1 - 171882078 I

a score=1571826.000000
s hg38.chr15_KI270850v1_alt    239048 457 +    430880 TCTCCCTGTTTAGGCAGGATGAATTCTCACTACCCCAAGGTGGCCAACCTTGTCCCTGTGATTCCATCTCTCCCAGAAAGAGAG--GTCTAGTCTCAGGGAAAACCCAGATTTGTTTGGCTTAGCCCATCTGACAGCTAATCACTGGAAATGGGGTAGGCTGGTAGAATGCTTTGGTCAGGTTT---TGTGTT--GAGAGAGAGGTGGAAAGATGGGAGGGAGGTAGCAAAACTTGCCTCAGTGGAACTATG-TAAGTTAATATAGAATGGCAAAGGGATGTTTCTTCCAAGGAAGAAATTCTAGAGAAGGAA-GAAAGTGGAGGGGAAGGcagcagttctccaag-ttttggggtcaggattcctttacactcttaaaaatacattgaggtcccaaggagctttggtttatgtagggtatatctattggtatttatcactagaaattaaatcagaaatatttaaaa
s panTro5.chrY               25700804 457 -  26350515 TCTCCCTGTTTAGGCAGGATGAATTCTCACTACCACAAGGTGGCCAACCTTGTCTCTGTGATTCCATCTCTCCCAGAAAGAGAG--GTCTAGACTCAGGGAAAACCCAGATTTGTTTGGCTTAGCCCACCTGACAGCTAATCACTGGACATGGGGTGGGCTGGTAGAATCCTTTGGTCAGGCTT---TGTGTT--GAGAGAGAGGTGGAAAGATGGGAGGGAGGTAGCAAAACTTGCCTCATTGGAACTATG-TAAGTTAATATAGAATGGCAAAGGGATGTTTCTTCCAAGGAAGAGATTCTAGGTAAGGAA-GAAAGTGGAGGGGAAGGcagcagttctccaag-tttttgggtcagtattcctttacactcttaaaaatacattgagggcccaaggagctttggtttatgtagggtatatctattggtatttatcactagaaattaaatcagaaatatttaaaa
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       337689 457 +    378907 TCTCCCTGTTTAGGCAGAATGAATTCTCACTACCCCAAGGTGGCCAACCTTGTCCCTGTGATTCCATCTCTCCCAGAAAGAGAG--GTCTAGTCTCAGGGAAAACCCAGATTTGTTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATGGGGTGGGCCGGTAGAATCCTTTGGTCAGGCTT---TGTGTT--GAGAGAGAGGTGGAAAGATGGGAGGGAGGTAGCAAAACTTGCCTCAGTGGAACTATG-TAAGTTAATATAGAATGGCAAAAGGATGTTTCTTCCAAGGAAGAAATTCTAGGGAAGGAA-GAAAGTGGAGGGGAAGGcagcagttctccaag-ttttggggtcaggattcctttacactcttaaaaatacattgagggcccaaggagctttggtttatgtagggtatatctattggtatttatcactagaaattaaatcagaaatatttaaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18838527 458 - 121039945 TCTCCCTGTTTAGGCAGGATGAATTCTCACTACCCCAAGGTGGCCAACCTTGTCTCTGTGATTCCATCTCTCCCAGAAAGAGAG--GTCTAGTCTCAGGGAAAACCCAGATTTGCTTCACTTAGCACACCTGACAGCTAATCACTGGAAATGGGGTGGGCTGGTAGAATCCTTTGGTCAGGTTT---TATGTT--GAGAGAGAGGTGTAAAGATGGGAGGGAGGTAGCAAAACTGGCCTCAATGGAACTATG-TAAGTTAATATAGAATGGCAAAGGGATGTTTCTTCCAAGGAAGAAATTCTagggaaggaaggaaagtggaggggaaggcagcagttctcctag-ttttggggtcaggattcctttacactcttaaaaatatattgagggcccaaggagctttggtttatgtaggttatatctattggtatttatcactagaaattaaatcagaaatatttaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62576489 458 + 169600520 TCTCCCTGATTAGGCAGGATGAATTCTGACTGCCCCAAGGTGGCCAGCCTTGTCCCTGTGATTCCAGATCTCCCAAAAAGAGAG--GTCTAGTCTCAGGGAAAACCCAGATTTGCTTGGCTTAGCCCACCTGGCAACTAATCACTGGAAATGGGGTGGGCTGGTAGAGTCCTTTGCTCAGGTTT---TGTGTT--GAGAGAGAGGTGGAAAGATGGGAGGGAGGTAGCAAAACTGGCCTCAATGGAACTCTA-TAAGTTAATATAGAATGGCAGAGGGATGCTTCTTCCAAGGAAGAAATTCTAGAGAAGGAAGGAAACTGGAAGGGAAGGcagcagttctcaaag-ttttggggtcaggattcctttacactcttaaaaatatattgagggcccaaggagctttggtttatgtagggcatatctattgttatttatcactagaaattaaatcagaaatatttaaaa
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      6237397 458 -   6271500 TCTCCCTGATTAGGCAGGATGAATTCTGACTGCCCCAAGGTGGCCAGCCTTGTCCCTGTGATTCCAGATCTCCCAAAAAGAGAG--GTCTAGTCTCAGGGAAAACCCAGATTTGCTTGGCTTAGCCCACCTGGCAACTAATCACTGGAAATGGGGTGGGCTGGTAGAGTCCTTTGCTCAGGTTT---TGTGTT--GAGAGAGAGGTGGAAAGATGGGAGGGAGGTAGCAAAACTGGCCTCAATGGAACTCTA-TAAGTTAATATAGAATGGCAGAGGGATGCTTCTTCCAAGGAAGAAATTCTAGAGAAGGAAGGAAACTGGAAGGGAAGGcagcagttctcaaag-ttttggggtcaggattcctttacactcttaaaaatatattgagggcccaaggagctttggtttatgtagggcatatctattgttatttatcactagaaattaaatcagaaatatttaaaa
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5130568 458 +   5160157 TCTCCCTGATTGGGCAGGATGAATTCTGACTGCCCCAAGGTGGCCAGCCTTGTCCCTGTGATTCCAGATCTCCCAAAAAGAGAG--GTCTAGTCTCAGGGAAAACCCAGATTTGCTTGGCTTAGCCCACCTGGCAACTAATCACTGGAAATGGGGTGGGCTGGTAGAGTCCTTTGCTCAGGTTT---TGTGTT--GAGAGAGAGGTGGAAAGATGGGAGGGAGGTAGCAAAACTGGCCTCAATGGAACTCTA-TAAGTTAATATAGAATGGCAGAGGGATGCTTCTTCCAAGGAAGAAATTCTagggaaggaaggaaactggaagggaaggcagcagttctcaaag-ttttggggtcaggattcctttacactcttaaaaatatattgagggcccaaggagctttggtttatgtagggcatatctattgttatttatcactagaaattaaatcagaaatatttaaaa
i cerAty1.NW_012001384v1    C 0 C 0
s colAng1.NW_012116021v1       298854 458 +   4111199 TCTCCCTGTTTAGGCAGGATGAATTCTGACTGCCCCAAGGTGGCCAGCCTTGTCCCTGTGATTCCAGATCTCCTAGAAAGAGAG--GTCTAGTCTCAGGGAAAACCCAGATTTGCTTGGCTTAGCCCACCTGACAGCTAATCACTGGAAATGGGGTGGGCTGGTAGAGTCCTTTGCTCAGGTTT---TGTGTT--GAGAGAGAGGTGGAAAGATGGGAAGGAGGTAGCAAAACTGGCCTCAATGGAACTATG-TAAGTTAATATAGAATGGCAAAGGGATGTTTCTTCCCAGGAAGAAATTCTagggaagcaaggaaagtggaagggaaggcagcagttctcaaag-ttttggggtcaggattcctttacactcttaaaaatatattgagggtccaaggagctttggtttatatagggcatatctattggtatttatcactagaaattaaatcagaaatatttaaaa
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1       717670 460 -   3745603 TCTTCCTGTTTAGGCAAGATGAATTTTGACTACCCCAA-GTGGCTAGCCTTGTCCCTGTGATTCCAGATCTCCTAGAAAGAGAG--GTCTAGCCTTAGGGAAAACTCAGATTTTCTTGGTTTAGCCCACCTGATAGCTAATCTCTGGAAATGGGGTATGCTGGTAGAGTCCTTTGGTCAGATTT---TGTGTCAAGAGAGGGAGGTGGAAGGATGGGAGGGAGGTAGCAAAACTGGCCTCAGTGGAACTATATTAAGTTAATATAGAATGGCAAAGGGATCTTTCTTCCACGGAATAAATACTagggaaggaaggaaagtggaggggaaggcagaagttctcaaac-ttttagtgtctggacttctttacactcttaaaaatatattgagggcccaaggagcttttgtttatgtaggatatatctattggtatttaccactagaagttaaatcagaaatatttaaaa
i aotNan1.NW_018511953v1    I 348 I 2969
s otoGar3.GL873530            6743844 431 -  36342412 --------TCTACGCCTGATGTATATTGACTACCCCAGATAGGCCAACATTATCCTTGAGACTCCAGGTCTCCCAGAAAGAGAGCTCTCTAGCCTCAAGAAAGGCCTGAATTTTCCTGGCTTAGTCCACCTGACAGATA--------AGGTGGAGTGGGCTGTCAG--TCTTTTGGTCAGGTGTTAATGTCAT--GGGAGGGAAGGAAAAAGATGGGATGGAGGTAGCAAAACTAGTCCCAGTGGAGCTACA-AAGGTTCGTAAAGAATGATAAAAGGATGTTTCTTCCAAGGAAGAAATTCTAGTTGAGGGGAGAAAATAGAGGGAAAGGcagcagttcgcaaagtttttgaagtcagggttcctttacactc---aaaatatattgaggtttcaaggagcctttgtttatataggttttatctgttgatatttatc------------attagaaatatttagaa
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548   1 +   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macFas5.chr7              106508942   1 - 171882078 I

a score=886749.000000
s hg38.chr15_KI270850v1_alt    239505 416 +    430880 tattg-tttaaaagctcac--cacatattgttataaatgcttttatgaaaagaaaa-----tttctaaacccaa----------------agtagtacagtcttacatcttttgcaaa-ttattttgatgtttgatatgtcatttgcatgatg------------tttgatatgtcattagcaaattgatatgtcagtttgcttctgcattcaatttattgtgtgatattttcttgaaaaaatgtgaacaaaggccagtctcatacagataaccattttagatcattgtggatatatatatat--ttttttgagatgaggtcttgccctgttgcccaggctggaaggtagtggtatgatcatagctcactgcagcctcagtctccagggactcaggtgatcctcccacctcagcctccagagtagctgggactacaggtgtgtaccaccatactt
s panTro5.chrY               25701261 416 -  26350515 tattc-tttaaaagctcac--cacatattgttataaatgcttttatgaaaagaaaa-----tttctaaacccaa----------------agtagtacaatcttacatcttttgcaaattttttttgatgtttgatatgtcatttgcatgatg------------tttgacatgtcattagcaaattgatatgtcagtttgcttctgcattcaatttattgtgtgatattttcttgaaaaaatgtgaacaaaggccaatctcatacagataaccattttagatcattgtggatatatatata---ttttttgagatgaggtcttgccctgttgcccaggctggaaggtagtggtgtgatcacagctcactgcagcctcagtctccggggactcaggtgatcctcccacctcagcctccagagtagctgggactacaggtgtgtaccaccacactt
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       338146 415 +    378907 tattc-tttaaaagctcac--cacatattgttataaatgcttttatgaaaagaaaa-----tttctaaacccaa----------------agtagtacaatcttacatcttttgcaaa-tttttttgatgtttgatatgtcatttgcatgatg------------tttgacatgtcattagcaaattgatatgtcagtttgcttctgcattcaatttattgtgtgatattttcttgaaaaaatgtgaacaaaggccagtctcatacagataACCATTTTAGACCATTGTGGATATATATATA---ttttttgagatgaggtcttgccctgttgcccaggctggaaggtagtggtgtgatcacagctcactgcagcctcagtctccagggactcaggtgatcctcccacctcagcctccagagtagctgggactacaggtgtgtaccaccacactt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18838985 423 - 121039945 tattc-tttaaaagctcac--cacatattgttataaatgcttttatgaaaagaaaa-----tttctaaacccaa----------------agtagtacaatcttacatcttttgcaaa-tttctttgatgtt-----tgtcatttgcatgatgtctgatatgtcatttgatatgtcattagcaaattgatatgtcaatttgcttctgcattcaatttattgtgtgatattttcttgaaaaaatgtgaacaaaggccaacctcatacagatagccattttagatcattgtggatatatatatata-tttattgagatggggtcttg-cctgttgcccaggctggaaggcagtggtttgatcacagctcactgcagcctcagtctctggggactcaggtgatcctcccacctcagcctccagagtagttgggactacaggtgtgtaccaccacactt
i nomLeu3.chr6              C 0 I 182
s rheMac8.chr7               62576947 375 + 169600520 tattc-tttaaaagctcac--cacatattgttataaatgcttttatgaaaagaaaa-----tttctaaacccaa----------------agtagtacagtcttgcatcttttgcaaa-tttctttgatgtttgATATGCCATTTG-----TG--------------------------------------------------TCTGCGTTCAATTTCTTGTGTGATATTTCCTTGAAAAAATGTGAACAAAGGCCAATCTCATACAGATAACCATTTTAGATCATTGTGGATGTATGTGTATATAtttttgagatggagtcttgccctgtcgcccaggctagaatgcagtggtgtgatcatggctcactgcagcctgagtctccggggacttgggtgatcctcccacctcagcctccagagtagttgggactacaggtgtgtaccaccacacct
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      6237855 375 -   6271500 tattc-tttaaaagctcac--cacatattgttataaatgcttttatgaaaagaaaa-----tttctaaacccaa----------------agtagtacagtcttgcatcttttgcaaa-tttctttgatgtttgATATGCCATTTG-----TG--------------------------------------------------TCTGCGTTCAATTTCTTGTGTGATATTTCCTTGAAAAAATGTGAACAAAGGCTAATCTCATACAGATAACCATTTTAGATCATTGTGGATGTATGTGTATATAtttttgagatggagtcttgccctgtcgcccaggctagaatgcagtggtgtgatcatggctcactgcagcctgagtctccggggacttgggtgatcctcccacctcagccttcagagtagttgggactacaggtgtgtaccaccacacct
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5131026 375 +   5160157 tattc-tttaaaagctcac--cacatattgttataaatgcttttatgaaaagaaaa-----tttctaaacccaa----------------agtagtacagtcttgcatcttttgcaga-tttctttgatgtttgATATGCCATTTG-----TG--------------------------------------------------TCTGCGTTCAATTTCTTGTGTGATATTTCCTTGAAAAAATGTGAACAAAGGCCAATCTCATACAGATAACCATTTTAGATCATTGTGGATGTATGTGTATATAtttttgagatggagtcttgccctgtcgcccaggctagaatgcagtggtgtgatcatggctcactgcagcctgagtctccggggacttgggtgatcctcccacctcagcctccagagtagttgggactacaggtgtgtaccaccacacct
i cerAty1.NW_012001384v1    C 0 C 0
s colAng1.NW_012116021v1       299312 375 +   4111199 tattc-tttaaaagctcac--cacatattgttataaatgcttttatgaaaagaaaa-----tttctaaacccaa----------------agtagtacagtcttgcatcttttgcaaa-tttctttgatgtttgatatgccatttg-----tg--------------------------------------------------tctgcattcaatttattgtgtgatatttgcttgaaaaaatgtgaacaaaggccaatctcatacagctagccattttagatcattgtggatgtatatgtatatatttttgagatggagtcttgccctgtcgcccagtctagaatgcagtggtgtgatcatggctcactgcagcctcagtctccggggacttgggtgatcctcccacctcagcctccagagtagttgggactacaggtgtgtaccaccacacct
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530            6744275 254 -  36342412 cattcattaaaaaacttactacatatattattataaatggctttatgaagagtaaccatattttctaaagtaaaagaattcagtgagagtagtaggacagtcttaacatttttgcaga-tctctttgatatttggtctgtcatcta----------------------------------------------------------ctgcattcaatttgttttgtgttttttggttgaaataatgtaaacaaaatccagtctc--ccagatatctggttcaaa------------------------------------------------------------aaaaggaatattttaatagcagttttcgataac--------------------------------------------------------------------------------
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1       718130 2969 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548   1 +   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macFas5.chr7              106508942   1 - 171882078 I

a score=1484403.000000
s hg38.chr15_KI270850v1_alt    239921 621 +    430880 ggctaa----------------------------------------------------------------------------ctttttgta-----ttttttgtagagacagggttttgcca---tgttgcctaggcttcttttttgatactccatcaaatcttggtttttcttgaactt----tggatcttccacccttgcatgatattacaacatcgtgcattggtcacttat-aaaacagtggttcactaagatcttctacatgttgatacat-----ttgtacagtatcaaaatacattcatcagtaccaccatcaatctcatcagaatacttttggaaag------------cgatggtgggcataagttttctaaaattctaattttttgttcaaaagcttgaattttattagtaattttgttattgaattttattatagcctgtctgttgttttccttgaaatgacagaat--------ctcatgttttgagaaaatatctgccagaaatgcgagttaaaataa-cattttttgtcagtcagcctttcaagtaaaaatggtattccattaaagtggttaattcacttcatgacttagccactcaag-gg-tttttcctcaggcagcctgtaggaatgctcatgtatacttcccatttcatcacttgaaatattaaaaagatatattcaatgatttagatatagtaaa---atattcactgcttcatcatagac-a
s panTro5.chrY               25701677 626 -  26350515 ggctaa----------------------------------------------------------------------------ctttttgta-----ttttttgtagagacagggttttgcca---tgttgcctaggcttcttttttgatactccatcaaatcttggtttttcttgaactt----tggatcttccacccttgcatgatattacaacatcgtgcattggtcacttat-aaaatagtggttcactaagatcttctacatattgatacat-ttgattgtacagtatcaaaatacattcatcaataccaccatcaatcaaatcagaatacttttggaaag------------tgatggtggacataagttttctaaaattctaattttttcttcaaaagcttgaattttattagtaattttgttattgaattttattatagcctgtctgttgttttccttgaaatgacagaat--------ctcattttttgaaaaaatatctgccagaaatgcaagttaaaacaa-cattttttgtcagtcagcctttcaagtaaaaatggtattccgttaaagtggttaattcacttcatgacttagtcactcaaatgt-ttttttctcaggcagcctgtaggaatgctcatgtatacttcccatttcatcacttgaaatattaaaaagatatattcaatgatttagatatagtaaa---atattcactgattcatcatagac-a
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       338561 624 +    378907 ggctaa----------------------------------------------------------------------------ctttttgta-----ttttttgtagagacagggttttgcca---tgttgcctaggctTCTTTTTTGAtattccatcaaatcttggtttttcttgaactt----tggatcttccacccttgcatgatattacaacatcgtgcattggtcacttat-aaaatagtggttcactaagatcttctacatgttgatacat-ttgattgtacagtatcaaaatacattcatcaataccaccatcaatctcatcagaatacttttggaaag------------cgatggtggacataagttttctaaaattctaattttttgttcaaaagcttgaattttattagtaattttgttattgaattttattatagcctgtctgttgttttccttgaaatgacagaat--------ctcat-ttttgagaaaatatctgccagaaatgcgagttaaaataa-cattttttgtcagtcagcctttcaagtaaaaatggtattccattaaagtggttaattcacttcatgacttagtcactcaag-gg-ttttttctcaggcagcctgtaggaatgctcatgtatacttcccatttcatcacttgaaatattaaaaagatctattcaaggatttagatatagtaaa---atattcactgcttcatcatagac-a
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18839590 700 - 121039945 ggctaattttttgtatttttagtagagacggagtttcactgtggtctcgatctcctgacctcgtgatccgcccgcctcgtccttttttgta-----ttttttgtagagacagggttttgccatgttgttgcctaggcttcttttttgataatccatcaaagcttggtttttcttgaactt----tggatcttccacccttgcaagatattataacatcgtgcattggtcatttat-aaaatagtggttcactaagatcttctacatgttgatacat-ttgattgtacagtatcagaatacattcatcaatatcaccatcaatctcatcagaaaacttttggaaag------------caatggtggatataagttttctaaaataataattttttgttcaaaagcttgaattttattagtaattttattattgaatcttattatggcctgtc----gttttccttgaaatgaaagaat--------ctcattttttgagaaaatatctgccagaaatgcaagttaaaataa-cattttttgtcagtcagcctttcaagtaaaaatggtattccattaaagtggttaattcacttcatgacttagtcactcaag-gg-ttttttttcaggcagcctgtaggaatgctcatgtatacttcgcatttcatcacttgaaatattaaaaagatatattcaaggatttagatgtagtaaa---atattcactgcttcatcatagac-a
i nomLeu3.chr6              I 182 C 0
s rheMac8.chr7               62577322 625 + 169600520 ggctaa----------------------------------------------------------------------------ctttttgtatttttttttttgtagagacagggttttgcca---tgttgcctaggctTCTTttttgatactccatcgaaacttggtttttcttgaactt----tggatctttcacccttgcatgatattataacatcatgcattggtcatttgtaaaaaaaatggttcactgaga---tctacatgttgatacaa-ttgattgtacagtatcaaaatacattaatcagtaccaacatcaatctcatcagaatacttttggaaag------------cgatggtggatataagttttctaaaattctatttttttgttcaaaagcttgaattttattagcaattttattattgaattttattatggcctgtc---tgttttccttgaaatgacagaat--------ctgat-tttttagaaaatgtctgccagaaactcaagttgaaataa-cattgtttgccagtcatcctttcaagtaaaaatggtgttccattaaagtggttaattctcttcatgacttagtcactcaag-ggtttttttctcaggcagcctgtaggaatgctcgtgtatacttcccatttcatcatttgaaatattaagaagatatattcaaggattaaagtgcagtaaa---atattcactgcgtcatcataaac-t
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      6238230 616 -   6271500 ggctaa----------------------------------------------------------------------------ctttttgta-ttttttttttgtagagacagggttttgcca---tgttgcctaggctTCTTttttgatactccatcgaaacttggtttttcttgaactt----tggatctttcacccttgcatgatattataacatcatgcattggtcatttataaaaaaaatggttcactgaga---tctacatgttgatacaa-ttgattgtacagtatcaaaatacattaatcagtaccaacatcaatctcatcagaatacttttggaaag------------cgatggtggatataagttttctaaaattctatttttttgttcaaaagcttgaattttattagc---------tttgaattttattatggcctgtc---tgttttccttgaaatgacagaat--------ctgat-tttttagaaaatgtctgccagaaactcaagttgaaataa-cattgtttgccagtcatcctttcaagtaaaaatggttttccattaaagtggttaattctcttcatgacttagtcactcaag-ggtttttttctcaggcagcctgtaggaatgctcgtgtatacttcccatttcatcatttgaaatattaagaagatatattcaaggattaaagtgcagtaaa---atattcactgcgtcatcataaacat
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5131401 618 +   5160157 ggctaa----------------------------------------------------------------------------ctttttgta---ttttttttgtagagacagggttttgcca---tgttgcctaggctTCTTttttgatactccatcgaaacttggtttttcttgaactt----tggatctttcacccttgcatgatattataacatcatgcattggtcatttattaaaaaaatggttcactgaga---tctacatgttgatacaa-ttgattgtacagtatcaaaatacattaatcagtaccaacatcaatctcatcagaatacttttggaaag------------cgatggtggatataagttttctaaaattctatttttttgttcaaaagcttgaattttattagcaattttattattgaattttattatggc----c---tgttttccttgaaatgacagaat--------ctgat-tttttagaaaatgtctgccagaaactcaagttgaaataa-cattgtttgccagtcatcctttcaagtaaaaatggttttccattaaagtggttaattctcttcatgacttagtcactcaag-ggtttttttctcaggcagcctgtaggaatgctcgtgtatacttcccatttcatcatttgaaatattaagaagatatattcaaggattaaggtgcagtaaa---atattcactgcgtcatcataaac-a
i cerAty1.NW_012001384v1    C 0 C 0
s colAng1.NW_012116021v1       299687 607 +   4111199 ggctaa----------------------------------------------------------------------------ctttttgta----tttttttgtagagacagggttttgcca---tgttgcctaggcttcttttttgatactccatcgaagcttggtttttcttgaactt----tggatctttcacccttgcatgatattataacatcaggccttggtcatttataaaaaaaatggttcactgagatcttctacatgttgatacaa-ttgattgtacagtatcaaaatacattaatcagtaccaacatcaatctcatcagaatacttttggaaag------------cgatggtgggtataagttttctaaaattctatttttttgttcaaaagcttgaattttattagc-------------aattttattatggcctgtc---tgttttccttgaaatgacagaat--------ctgat-tttttagaaaatgtctgccagaaactcaagttgaaataa-cattgtttgccagtcatcctttcaagtaaaaatggttttccattaaagtggttaatccacttcatgacttagtcactcaag-gg-ttttttctcaggcagcctgtaggaatgctcgtgtatgcttcccatttcatcatttgaaatattaagaagatatattcaaggattaagat---gtaaa---atattcactgcttcatcataaac-a
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530            6744529 528 -  36342412 ------------------------------------------------------------------------------------------------------------------------------------tgtggatattccttgatactccattaaaacctaatctgtttgcaactttgaatgaatcttttcccct------------------------ttgg---------aaaatactggttcactgaga---cctaaatgttgatacatttttattatacaatatcaaaaca---taattcatattgccctcaatcttatgagaatactcttaggaagatgtctagttcatggtggtgggtacaagttttcaaacattctaa----ctgctcaaaagctcgaattttattggcaa-------------------taggcacagtcctttgttttccttgaaatgacaagattctcttcattcat-tgttgaggaaacatctgccagaaatccaagatggaataaccgttgtttggcattcatttttgagggtaataatgttgctccattgaggtggttagttcacctcaag--tcagtcacataag-tg-ctttttctcaggtaatctgtaagagtgctcagatatacatcacatttcat-actggcaa-------------tatcccaggatcgtgatttagtaaattcatttttactgcttcatcatagac-a
i otoGar3.GL873530          C 0 I 180
e aotNan1.NW_018511953v1       718130 2969 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548   1 +   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macFas5.chr7              106508942   1 - 171882078 I

a score=617788.000000
s hg38.chr15_KI270850v1_alt    240542 245 +    430880 ---ttcttttttttttttttaattttcgagacagggccttgttctgtcacccaggctggagtgcagtagcgtgatcacagctcactgcagcctcaactttctgggttcagtcaatcctcctgcctcagccttccaagacgctgggactacaggcatgcagccactgtgttcagctaatttttgtattttttgtaaagatgaggtttca--ccaggttgcccaggcaggtcttgaactcccgggctcaagg-
s panTro5.chrY               25702303 243 -  26350515 ---ttc--ttttttctttttaatttttgagatagggacttgttctgtcactgaggctggagtgcagtagcgtgatcacagctcactgcagcctcaactttcttggttcagccaatcctcctgcctcagccttccaagacgctgggactacaggcatgcagccactgtgttcagctaatttttgtattttttgtagagatgaggtttca--ccaggttgcccatgcaggtcttgaactcccaggctcaaat-
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       339185 242 +    378907 ---ttc---tttttttttttaattttcgagacagggccttgttctgtcaccgaggctggagtgcagtagcgtgatcacagctcactgcagcctcaactttctgggttcagtcaatcctcctgcctcagccttccaagacgctgggactacaggcatgcagccactgtgttcagctaatttttgtattttttgtagagatgaggtttca--ccaggttgcccatgcaggtcttgaactcccgggctcaagt-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18840290 241 - 121039945 ---ttc----ttttttttttaatctttgagacagggccttgttctgttacccaggctggagtgcagtagcatgatcacagctcactgcagcctcaactttctgggttcagtcaatccttctacctcggccttccaagaagctgggactacaggcatgcagccactgtgttcagctaatttttgtattttttgtagagatgaggtttca--ccaggttgcccaggcaggtcttgaactcccgggctcaagt-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62577947 242 + 169600520 ---ttt---tttttttttttaatttttgagacagggccttgttctgtcacccaggctgaagtgcagtagtgtgatcagagctcactgcagcctcaactttctgggctcaatcaatcctcctgcctcagccttccaagtatgtgggactacaggcatgcagccactgtgttcagctaatttttgtattttttgtggagatggggtttca--ccaggctgcccaggcaggtcttgatctcctgggctcaagt-
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      6238846 242 -   6271500 ---ttt---ttttttttttaaatttttgagacagggccttgttctgtcacccaggctgaagtgcagtagtgtgatcacagctcactgcagcctcaactttctgggctcaatcaatcctcctgcctcagccttccaagtatgtgggactacaggcatgcagccactgtgttcagctaatttttgtattttttgtggagatggggtttca--ccaggctgcccaggcaggtcttgatctcctgggctcaagt-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5132019 242 +   5160157 ---ttt---ttttttttttaaatttttgagacagggccttgttctgtcacccaggctgaagtgcagtagtgtgatcacagctcactgcagcctcaactttctgggctcaatcaatcctcctgcctcagccttccaagtatctgggactacaggcatgcagccactgtgttcagctaatttttgtattttttgtggagatggggtttca--ccaggctgcccaggcaggtcttgatctcctgggctcaagt-
i cerAty1.NW_012001384v1    C 0 C 0
s colAng1.NW_012116021v1       300294 242 +   4111199 ---ttt---tttttgtttttaatttttgagacagggccttgttctgtcatccaggctgaagtgcagtagtgtgatcacagctcactgcagcctcaactttctgggctcagtcaatccttctgcctcagccttccaagtatctgggactacaggcctgcagccactgtgttcagctaatttttgtattttttgtggagatggggtttca--ccaggctgcctaggcaggtcttgacctcctgggctcaagt-
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530            6745237 236 -  36342412 TTTTtt---ttcttcttctttttttttgagacagagtc---tcttgttgcccttggtagagtgctgtggtg---tcacagttcacagcaacctcaaactcttgggcttaagtgatactcttgccacagcctcccaagtaggtgggactacaggtac-ctgccacaacacccagctatttt-----tttgttgcagttgtcattgttcgttttagctggcctgggctgggttcgaacctgccagcctcagtg
i otoGar3.GL873530          I 180 I 500
e aotNan1.NW_018511953v1       718130 2969 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548   1 +   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macFas5.chr7              106508942   1 - 171882078 I

a score=983204.000000
s hg38.chr15_KI270850v1_alt    240787 411 +    430880 gatccccctgcctgggccttccaaagtgctggaattacagacatgagccaaaattcccaaacttatcatagacattcttaaatgaaactgaccttttgttgcccttcctttttatttttatttttggagacggagttttgctctgttgcccagtctggagttacataggtgcaatttcagctcaaggcaacctctgcctcccaggttcaagtgattctcctgcctcagcctcctaagtatttggtaatacaggcatgcaccaccacaccgagctaatttttgtatttttagtagagatggggtttcaccatgttggccaagctcgtctcaaactcctgaccttaagtgatccgtctacctcagcctcccaaagcactgggattactggtgtaggccaccatgtcccaccca
s panTro5.chrY               25702546 411 -  26350515 gatccccctgcctgggccttccaaactgctggaattatagacatgagccaaaattcccaaccttagcatagacattcttaaatgaaactgaccttttgttgcccttcctttttatttttatttctggagacggagttttgctctgttgcccagtctggagttacataggtgcaatttcagctcaaggcaacctctgcctcccaggttcaagtgattctcctgcctcagcctcctaagtatttgggaatacaggcatgcaccaccacactgagctaatttttgtatttttagtagagatgcggtttcaccatgttggccaagctggtctcaaactcctgaccttaggtgaaccgtctacctcagcctcccaaagcactgggattacagaagtaggccaccatgccccacctg
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       339427 411 +    378907 gatccccctgcctgggccttccaaagtgctggaattatagacatgagccaaaattcccaaccttatcatagacattcttaaatgaaactgaccttttgttgcccttcctttttatttttatttttggagacggagttttgctctgttgcccagtctggagttacataggtgcaatttcagctcaaggcaacctctgcctcccaggttcaagtgattctcctgcctcagcctcctaaatatttgggaatacaggcatgcaccaccacaccgagctaatttttgtatttttagtagagatggggtttcaccatgttggccaagctggtctcaaactcctgaccttaggtgatccgtctacctcagcctcccaaagcactgggattacaggcgtaggccaccatgccccacccg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18840531 411 - 121039945 gatccccctgcctgggccttccaaagtgctggaattatagacatgagccaaaattcccgaccttatcatagacattcttaaatgaaactgaccttttgttgcccttcctttttatttttatttttggagatggagttttgctctgttgcccagtctggaattacataggcacaatttcagctcaaggcaacctctgcctcccaggttcaagtgattctcctgcctcagcctcccaagtgtctgggactacaggcatgcaccaccacactgagctaatttttgtatttttagtagagatggggtttcaccatgttggcgaagctggtctcaaactcctgacctcaggtgatctgtctgcctcagcctcccaaagcactgggattacaggtgtgagccaccgtgccccaccca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62578189 411 + 169600520 gatccccctgcctgggccttccaaagtgctggaattatagacatgagccaaaattcccaaccttatcatagatgttcttaaatgaaactgaccttttgttgctcttcctttttctttttctttttggagatggagttttgctctgttgcccagtctggagttacataggtgcgatttcagctcaaggcaacctctgcctcccaggttcaagtgattctcctgcctcagcctcccaagtagctggaactacaggcacgcatcaccacaacgagttaatttttgtatttttagtagagatggggtttcaccatgttggccaagctggtctcaaactcctaacctcaggtaatccatctgtctcagccttccgaagcactgggattacaggcgtgagccaccctgccccacctg
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      6239088 411 -   6271500 gatccccctgcctgggccttccaaagtgctggaattatagacatgagccaaaattcccaaccttatcatagatgttcttaaatgaaactgaccttttgttgctcttcctttttctttttctttttggagatggagttttgctctgttgcccagtctggagttacataggtgcgatttcagctcaaggcaacctctgcctcccaggttcaagtgattctcctgcctcagcctcccaagtagctggaactacaggcacgcaccaccacaacgagctaatttttgtatttttagtagagatggggtttcaccatgttggccaagctggtctcaaactcctaacctcaggtaatccatctgtctcagccttccgaagcactgggattacaggcgtgagccaccctgccccacccg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5132261 401 +   5160157 gatgcccctgcctgggccttccaaagtgctggaattatagacatgagccaaaattcccaaccttatcatagacgttcttaaatgaaactgaccttttgttgctcttcctttttctttttctttttggagatggagttttgctctgttgcccagtctggagttacataggcgcgatttcagctcaaggcaacctctgcctcccaggttcaagtgattctcctgcctcagcctcccaagtagctggaactacaggcacgcaccaccacaacgagctaatttttgtatttttagtagagatggggtttcaccatgttggccaagctggtctcaaactcctgacctcaggtaatccatctgtctc----------agcactgggattacaggcgtgagccaccctgccccacccg
i cerAty1.NW_012001384v1    C 0 C 0
s colAng1.NW_012116021v1       300536 411 +   4111199 gatccccctgcctgggccttccaaaatgctggaattatagacatgagccaaaattcccagccttatcatagacgttcttaaatgaaactggccttttattgctcttcctttctctttttctttttggagatggagttttgctctgttgcccagtctagagttacataggcacgatttcaggtcaaggcaacctctgcctcccaggttcaagtgattctcctgcctcagcctcccaagtagctgggactacaggcacgcaccaccacaccgagctaatttttatatttttagtagagatggggtttcaccacgttggccaagctggtctcaaactcctgacctcaagtaatctgtctgcctcagcctcccaaagcactgggattacaggcgtgagccaccctgccccgcctg
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1       718130 2969 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6745473 500 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548   1 +   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macFas5.chr7              106508942   1 - 171882078 I

a score=389655.000000
s hg38.chr15_KI270850v1_alt    241198 127 +    430880 cccttcctttttaaacctttcctgtgcctaatgaagaataccatgactactagtagtttggtgttactgcttttgtttgtgctaaagtaccagcatttttacccaccattgtatttgcacacttaca
s panTro5.chrY               25702957 127 -  26350515 cccttcctttttaaatctttcctgtgcatagtgaagaataccatgactactagtagtttggtgttactgcctttgtttgtgctaaagtaccaacatttttacccaccattgtatttgcatacttaca
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       339838 126 +    378907 cccttcctttttaaacctttcctgtgcatagtgaagaataccatgactactagtactttggtgttactgcctttgtttgtgctaaagtaccagcatttttacccaccattgtatttgcacac-taca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18840942 127 - 121039945 cccttcctttttaaacctttcctgtgcataatgaagaataccatgactactagtagtttggtgttactgcctttgtttgtgctaaagtaccagcatttttacccaccattgtatttgcacgcttaca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62578600 127 + 169600520 cccttcctttttaaacatttcctgtgcatggtgaagaataccatgactactagtagtttggtgttactgcctttgtttgtgctaaagtaccagtatttttacccaccattgtatttgcatgcttaca
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      6239499 127 -   6271500 cccttcctttttaaacatttcctgtgcatggtgaagaataccatgactactagtagtttggtgttactgcctttgtttgtgctaaagtaccagtatttttacccaccattgtatttgcatgcttaca
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5132662 127 +   5160157 cccttcctttttaaacatttcctgtgcatggtgaagaataccatgactactagtagtttggtgttactgcctttgtttgtgctaaagtaccagtatttttacccaccattgtatttgcatgcttaca
i cerAty1.NW_012001384v1    C 0 C 0
s colAng1.NW_012116021v1       300947 127 +   4111199 cccttcctttttaaacatttcctgtgcatggtgaagaataccatgactactagtagtttggtgttactgcttttgtttgtgctaaagtaccagtatttttacccaccattgtatttgcatgcttaca
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1       721099 127 -   3745603 cccttcctttttaaacctttcctgtgcatagtgaagaatactttgaatactagtagtttggtgttactgcctttatttttgctaaagaaccagcatttttacccaccattttatctgcaccctttca
i aotNan1.NW_018511953v1    I 2969 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6745473 500 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548   1 +   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macFas5.chr7              106508942   1 - 171882078 I

a score=1279974.000000
s hg38.chr15_KI270850v1_alt    241325 411 +    430880 gcaaatgtc-----------accatgttagtattcctgtcaaaat---------------------------------agtttggacttgggggtctgagggccgcactttgggaacca-ttgAAATAGGTACTTAGACGTACTAGATATCATATCTTTTCATCTACAAGGTTTTTAAAAACTTG----------------ATTTCAGTTAA-TTTTTTTTTTGTAACTTTTAAAATATGGTTTTGAGGGGTTTCAGTCCAGAGCAACAACACGTATTTTATTTTGCTTATGCTGAAGTTTACTAGA-AAATACTAACCTAACAGAATGAAGTCCTAAATCTAATTGCAATTTCCTT---AGCCAAAAGAAAAAAAAACG---AAAATTAAAAGTGTAAAAATAGTCCATATGGTGTATTCTCAGTGTATGCTGAAGAATTTATAGAAGAAAATGCAATACTCAGTAACTGGTGTTCTTT
s panTro5.chrY               25703084 414 -  26350515 gcaaatgtc-----------accatgttagtattcctgtcaaaat---------------------------------agtttggacttgggggtctgagggcctcactttgggaacca-ttgAAAAAGGTACTTAGATGTACTAGATATCATATCTTTTCATCTACAAGGTTTTTAAAAACTTG----------------ATTTCAGTTAA--TTTTTTTTTGTAATTTTTAAAATATGGTTTTGAGGGGTTTCAGTCCAGAGCAACAACACATATTTTATTTTGCTTATGCTGAAGTTTACTAGACAAATACTAACCTAACAGAATGAAGTCCTAAATCTAATTGCAATTTCCTT---AGCCaaaagaaaaaaaaaaacacaaaattaaaaGCGTAAAAATAGTCCATATGGTGTATTCTCAGTGTATGCTGAAGAATTTATAGAAGAAAATGCAATACTCAGTAAGTGGTGTTCTTT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       339964 411 +    378907 gcaaatgtc-----------accatgttagtattcctgtcaaaat---------------------------------agtttggacttGGGGGTCTGAGGGCTGCACTTTGGGAACCA-TTGAAATAGGTACTTAGATGTACTAGATATCATATCTTTTCATCTACAAGGTTTTTAAAAACTTG----------------ATTTCAGTTAA--TTTTTTTTTGTAATTTTTAAAATATGGTTTTGAGGGGTTTCAGTCCAGAGCAACAACACGTATTTTATTTTGCTTATGCTGAAGTTTACTAGACAAATACTAACCTAACAGAATGAAGTCCTAAATCTAATTGCAATTTCCTT---AGCCAAAAGAAAAAAAAACG---AAAATTAAAAGCGTAAAAATAGTCCATATGGTGTATTCTCAGTGTATGCTGAAGAATTTATAGAAGAAAATGCAATACTCAGTAAGTGGTGTTCTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18841069 407 - 121039945 gcaaatgtc-----------accatgttagtactcctgtcaaaat---------------------------------agtttggacttgggggtctgagggccacactttgggaacca-ttgAAATAGGTACTTAGACCTACTATATATCATATCTTTTCATCTACAAGGTTTTTAAAAACTTG----------------ATTTCAGTTAA---TTTTTTTTGTAATTTTTAAAATGTGGTTTTGAGGGGTTTCAGTCCAGAGAAACAACACGTATTTTATTTTGCTTATGCTGAAGTTTACTAGACAAATACTAACCTAACAGAATGAGGTCCTAAATCTAATTGCAATTTCCTT---AGCCAAAAG---AAAACCCC---AAAATTAAAATCGTAAAAATTGTCCATATGGTGTATTCTCAGTGTATGCTGAAGAATTTATAGAAGAAAATGCAATACTCAGTAAGTGGTGTTCTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62578727 411 + 169600520 gctagtgtc-----------accatgttgttACTCCTGTCACAAT---------------------------------AGTTTGGACCTGGGGGTCTGAGGGCCGCGCTTTGGGAACCA-CTGAAATAGGTACTTAGACCTAGTATATATTGTATGTTTTCGTCTTCAAGGGTTTTAAAAACTTG----------------ATTTCAGTTAA--TTTTTTTTTGTAATTTTTAAAATATGGTTTTGAGGGGTTTCAGTCCAGAGCAACAATACGTATTTTATTTTGCTTATGCTGAAGTTTACTAGACAAATACTAACCTAACAGAATGAGGTCCTAAATCTAATTGCAATTTCGTT---AGCCAAAATAAAAAAGCCCC---AAAATTAAAAGCGTAAAAATGGTCCATATGGTGTATTCTCAGTGTATGCTGAAGAATTTATAGAAGAAAATGCAATACTCAGTAAGTGGTGTTCTTT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      6239626 411 -   6271500 gctagtgtc-----------accatgttgttACTCCTGTCACAAT---------------------------------AGTTTGGACCTGGGGGTCTGAGGGCCGCGCTTTGGGAACCA-CTGAAATAGGTACTTAGACCTAGTATGTATTGTATGTTTTCATCTTCAAGGGTTTTAAAAACTTA----------------ATTTCAGTTAA--TTTTTTTTTGTAATTTTTAAAATATGGTTTTGAGGGGTTTCAGTCCAGAGCAACAATACGTATTTTATTTTGCTTATGCTGAAGTTTACTAGACAAATACTAACCTAACAGAATGAGGTCCTAAATCTAATTGCAATTTCGTT---AGCCAAAATAAAAAAGCCCC---AAAATTAAAAGCATAAAAATGGTCCATATGGTGTATTCTCAGTGTATGCTGAAGAATTTATAGAAGAAAATGCAATACTCAGTAAGTGGTGTTCTTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5132789 411 +   5160157 gctagtgtc-----------accatgttgttACTCCTGTCACAAT---------------------------------AGTTTGGACCTGGGGGTCTGAGGGCCGCGCTTTGGGAACCA-CTGAAATAGGTACTTAGACCTAGTATATATTGTATGTTTTCATCTTCAAGGGTTTTAAAAACTTG----------------ATTTCAGTTAA--TTTTTTTTTGTAATTTTTAAAATGTGGTTTTGAGGGGTTTCAGTCCAGAGCAACAATATGTATTTTATTTTGCTTATGCTGAAGTTTACTAGACAAATACTAACCTAACAGAATGAGGTCCTAAATCTAATTGCAATTTCGTT---AGCCAAAATAAAAAAGCCCC---AAAATTAAAGGCGTAAAAATGGTCCATATGGTGTATTCTCAGTGTATGCTGAAGAATTTATAGAAGAAAATGCAATACTCAGTAAGTGGTGTTCTTT
i cerAty1.NW_012001384v1    C 0 C 0
s colAng1.NW_012116021v1       301074 413 +   4111199 gctaatgtc-----------accatgttattattcctgtcacaat---------------------------------agtttggacctgggggtctgagggcggcactttgggaacca-ctgAAATAGGTACTTAGACCTACTATATATCGTATCTTTTCATCTTCAAAGCTTTTAAAAACTTG----------------ATTTCAGTTAATTTTTTTTTTTGTAATTTTTAAAATATGGTTTTGAGGGGTTTCAGTCCAGAGCAACAAGACGTATTTTATTTTGCTTATGCTGAAGTTTACTAGACAAATACTAACCTAACAGAATGAGGTCCTAAATCTAACTGCAATTTCGTT---AGCCAAAATAAAAAAGCCCC---AAAATCAAAAGCGTAAAAATGGTCCATATGGTGTATTCTCAGTGTATGCTGAAGTATTTATAGAAGAAAATGCAATACTCAGTAAGTGGTGTTCTTT
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1       721226 406 -   3745603 tcatatgtc-----------aacttgttagtattcttgtaaaaat---------------------------------agtttggacctgggggtctgagggtcccactttgggaaccA-TTAAAATAGGTACTTAGACCTACTATATATCATATCTTTGCATCTACAGGA---TTAAAAAAATA----------------GTTTCA--TAA---TTGTTTTTGTAATTTTTAAAATATGGTTTTGAGGGATTTCAGTTCAGAGCAAGAGCATGTGTGTTTCTTGGCTTCTGCTGAAGTTTACTAGACAAATATTAAGCTAATAGAATGAGGTCCTAAATCTAGTTGCAGTTTCTTT---AGCCTAAGGAAAAAGAAACCTA-AAAACTAAAACAGTAAAAATGGTCCAGATGGTGTATTCCCAATGCGTG-TGGAGAATTTGAAGAAGAAAATGCAACACTCAATAAGTGGTGTTCTTT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6745973 451 -  36342412 gcagatgtccttgtgataaaattattttttttcttctgggtaaatacctagtaatgcgattgtgggatcaaGAAATGCAGTTTGGACTTAGAGGGTTGAGGGCCCC-CTTCGGGAACCATTTGAAAAAGGTACTCAGACCTATTATATATCATATTTTCTCATGTTCAGAA--TTGAAAAACATGTCTGAGGTAGTAACATAATTCAGTTAA----TGTTTCTTCAGTTCTCTTAATATG-----------TTTCAGGCCATAGCAACAATGTATATTTTATTTTGCTTATGCAGAAGTTTATTAGAC-AACACTAATCT-ATAGAATGAAATCCTAAATCTAGTTTTTTTTTTCTTTTAAGGCTAAAGAAAATA----C---AAAACTAAAACAGTAAAAATGATCTAGATGATATGTTCCCAAAGTAGGTTGAAGAG--TGAAGAGGAAAATGTAATATTCAATAAATGGTTTTCTTG
i otoGar3.GL873530          I 500 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548   1 +   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macFas5.chr7              106508942   1 - 171882078 I

a score=41168.000000
s hg38.chr15_KI270850v1_alt    241736 16 +    430880 AAGAATAGGGTTggct
s panTro5.chrY               25703498 16 -  26350515 AAGAATAGGATTggct
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       340375 16 +    378907 AAGAACAGAATTggct
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18841476 16 - 121039945 AAGAATAGGATTggct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62579138 16 + 169600520 AAGAGTAGGATTggct
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      6240037 16 -   6271500 AAGAGTAGGATTggct
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5133200 16 +   5160157 AAGAGTAAGATTggct
i cerAty1.NW_012001384v1    C 0 C 0
s colAng1.NW_012116021v1       301487 16 +   4111199 AAGAGTAGGATTggct
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530            6746424 16 -  36342412 AGAAATAGTATTAATT
i otoGar3.GL873530          C 0 I 497
e aotNan1.NW_018511953v1       721632  0 -   3745603 C
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548  1 +   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e macFas5.chr7              106508942  1 - 171882078 I

a score=633506.000000
s hg38.chr15_KI270850v1_alt    241752 303 +    430880 gggcgcggtggctcatgcctgtaatcccaacactttgggaggccgaggtgggtggatcatctgagattaggggttcgagaccagcctgaccaacatagagaaaccccgtctctactaaaaatacaaaattagtggggcatgatggcaca----tgcctgtaatcccagctactcaggaaggctgaggcaggagaattgcttgaacctgggaggtggaggttgtgatgagctgagatcgtgccactgcgctccagcctgggcaacaagagcgaaactcggtctcaaaaaaaa-aacaaa--------------aaagaaaaaa
s panTro5.chrY               25703514 321 -  26350515 gggtgcggtggctcatacctgtaatcccaacactttggaaggctgaggtggggggatcatctgagattaggggttcgagaccagcctgaccaacatggagaaaccctgtctctactaaaaatacaaaattagtggggcatgatggcacatgcctgcctgtaatcccagctactcaggaatgctgagtcaggagaattgcttgaacccgggaggtggaggttgtgatgagctgagatcgtgccactgcactccagcctgggcaacaagagcaaaattcggtctcaaaaaaaa-aagaaaaaaaagaaaaaaagaaagaaaaaa
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       340391 299 +    378907 gggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcggatcatctgagattaggggttcgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagtggggcctgatggcaca----tgcctgtaatcccagctactcaggaaggctgaggcaggagaattgcttgaacccgggaggtggaagttgtgatgagctgagatcgtgccactgcactccagcctgggcaacaagagcgaaactcggtctcaaaaaaaa-ac------------------aaaaaaagaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18841492 300 - 121039945 gggcgaggtggctcacacctgtaatcccaacactttgggaggccgaggtgggcggatcatctgagactgggggttcaagaccagcctgaccaacatggagaaaccccgtctctactaaaaatacaaagttagccaggcgtgatggcaca----tgcctgtaatcccagctacttaagaaggctgaggcaggagaattgcttgaacccaggaggtggaggttgtggtgagctgagatcgtaccactgcactccagcctgggcaacaagagcgaaactcggtctcaaaaaaaa-aac-----------------aaagaagaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62579154 285 + 169600520 gggcacggtggctcgcgcctgtaatcccaacactttgggaggccgaggtgggcggatcgtctgagactgggagttctagaccggcctgaccaacatggagaaaccccgtctctcctaaaaatgcaaaattagccgggcgtgatg-----------------------gctactcaggaaggctgaggcaggagaattgcttgaacctgggaggtgcaggttgtggtgagctgagattgtgccactgcactccagcctgggcagcaagagcgaaactcggtctcaaaaaaaacccaaaa--------------aaagaaaaaa
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      6240053 284 -   6271500 gggcacggtggctcgcgcctgtaatcccaacactttgggaggccgaggtgggcggatcgtctgagactgggagttctagaccagcctgaccaacatggagaaaccccgtctctcctaaaaatgcaaaattagccgggcgtgatg-----------------------gctactcaggaaggctgaggcaggagaattgcttgaacctgggaggtgcaggttgtggtgagctgagattgtgccactgcactccagcctgggcagcaagagcgaaactcggtctcaaaaaaaa-ccaaaa--------------aaagaaaaaa
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5133216 280 +   5160157 gggcacggtggctcgtgcctgtaatcccaacactttgggaggccgaggtgggcggatcgtctgagactgggagttctagaccagcctgaccaacatggagaaaccccgtctctcctaaaaatgcaaaattagccgggcgtgatg-----------------------gctactcaggaaggctgaggcaggagaattgcttgaacctgggaggtgcaggttgtggtgagctgagattgtgccactgcactccagcctgggcagcaagagtgaaactcggtctcaaaaaaaa-ccaaaa--------------aaag----aa
i cerAty1.NW_012001384v1    C 0 C 0
s colAng1.NW_012116021v1       301503 287 +   4111199 gggcgcggtggctcacgcctgtaatcccaacactttgggaggccgaggtgggcggatcgtctgagattgggagttctagaccagcctgaccaacatggagaaaccctgtctctactaaaaatacaaaattagccgggcgtggtggcaca----tgtgtgtaatcctagctactcaggaaggctgaagcaggagaattgcttgaacctgggaggtgcaggttgtggttagctgagatcgtgccactgcactccagcctgggcaacaagagcgaaactcggtctgaaaaaaaa-------------------------------
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1       721632   0 -   3745603 C
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6746440 497 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548   1 +   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macFas5.chr7              106508942   1 - 171882078 I

a score=419155.000000
s hg38.chr15_KI270850v1_alt    242055 146 +    430880 aagaaTAGGAGTAATTCTGAAGAGTTTCTTT--TAGCCTGTAAAGAGATTTGGAACACAGTAAGAGAGGAATGAGAAGAATGAGAATAGTAAAATAAACCATTATTGAAGAGATATGCTGTTAATGATGTCCTCCATCAATACAACtt
s panTro5.chrY               25703835 146 -  26350515 aagaatagaaGTAATTCTGAAGAGCTTCTTT--TAGCCTGTAAAGAGATTTGGAACACAGTAAGAGAGGAATGAGAAGAATGAGAATAGTAAAATAAACCATTATTGAAGAGATATACTGTTAATGATGTCCTCCATCAATACAACtt
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       340690 146 +    378907 aagaaTAGGAGTAATTCTGAAGAGTTTATTT--TAGCCTGTAAAGAGATTTGGAACACAGTAAGAGAGGAATGAGAAGAATGAGAATAGTAAAATAAACCATTATTGAAGAGATATACTGTTAATGATGTCCTCCATCAACACAACTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18841792 146 - 121039945 aagaaTAGGAGTAATTCTGAAGAGTTTCTTT--TAGCCTGTAAAGAGATTTGGAACACAGTAAGAGAGGAATGAGAAGAATGAGAATAGTAAAATAAACCATTATTGAAGAGATAGACTGTTAATGATGTCCTCCTTCAATACAACTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62579439 146 + 169600520 aagaaTAGGATTAATTCTGAAGGCTTTCTTT--TAGCCTGTAGAGAGATTTGGAACACAGTAAGAGAGGAATGAGAGGAATGATAATAGTAAAATAAATCATTATTGAAGAGAGATACTGTTAATGATGGTCTCCTTCAATACAACTT
i rheMac8.chr7              C 0 I 643
s macNem1.NW_012011056v1      6240337 146 -   6271500 aagaaTAGGATTAATTCTGAAGGCTTTCTTT--TAGCCTGTAGAGAGATTTGGAACACAGTAAGAGAGGAATGAGAGGAATGATAATAGTAAAATAAATCATTATTGAAGAGAGATACTGTTAATGATGGTCTCCTTCAATACAACTT
i macNem1.NW_012011056v1    C 0 I 4
s cerAty1.NW_012001384v1      5133496 146 +   5160157 aagaaTAGGATTAATTCTGAAGGCTTTCTTT--TAGCCTGTAGAGAGATTTGGAACACAATAAGAGAGGAATGAGAAGAATGATAATAGTAAAATAAATCATTATTGAAGAGAGATACTGTTAATGATGGTCTCCTTCAATACAACTT
i cerAty1.NW_012001384v1    C 0 I 2
s colAng1.NW_012116021v1       301790 144 +   4111199 --GAGTAGGATTAATTCTGAAGACTTTCTTT--TAGCCTGTAAAGAGATTTGGAACACAGTAAGAGAGGAATGAGAAGAATGATAATAGTAAAATAAATCATTATTGAAGAGATATACTGTTAATGATGTTCTCCTTCAATACAACTT
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1       721632 143 -   3745603 AAGAACAGGATTAATTCTAAAGAGTTTCTCTTATAGCCTGTAAAGAGATTTGGGACACAGTAAGAG-----TTAGAGGAATGAGAATAGTAAGATAACCCATTATTGACTAGGTATACTATTAATGATGTCCTCCTTCAATACAGCTT
i aotNan1.NW_018511953v1    C 0 I 41
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6746440 497 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548   1 +   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macFas5.chr7              106508942   1 - 171882078 I

a score=10428.000000
s hg38.chr15_KI270850v1_alt    242201 7 +    430880 gtttctc
s panTro5.chrY               25703981 7 -  26350515 gtttttc
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       340836 7 +    378907 Gtttttc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18841938 7 - 121039945 Gtttttc
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1      6240487 7 -   6271500 TTTTTTC
i macNem1.NW_012011056v1    I 4 C 0
s cerAty1.NW_012001384v1      5133644 7 +   5160157 TTTTTTC
i cerAty1.NW_012001384v1    I 2 C 0
s colAng1.NW_012116021v1       301934 7 +   4111199 TTTTTTC
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018511953v1       721775 41 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6746440 497 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548 1 +   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e macFas5.chr7              106508942 1 - 171882078 I
e rheMac8.chr7               62579585 643 + 169600520 I

a score=159113.000000
s hg38.chr15_KI270850v1_alt    242208 108 +    430880 tt--------------tttgtt-tgtttg--ttttttgagatggagtcttgctct----atcgcca-gcctggagtgcagtgg-acatctcagcccactgaaacctctgcctcccgggttcaagtgattcc
s panTro5.chrY               25703988 119 -  26350515 ttttttttgtttg---tttgtt-tttttg--ttttttgagatggagtcttgctct----atcgcca-gcctggagtgcagtgg-acatctcagcccactgaaacctctgcctcccaggttcaagtgattcc
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       340843 110 +    378907 ttt-------------tttgttgttgttg--ttttttgagatggagtcttgctct----atcgcca-gcctggagtgcagtgg-acatctcagcccactgaaacctctgcctcccgggttcaagtgattcc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18841945 104 - 121039945 ttt--------------------tttttg--ttttttgagacagagtcttgctct----atcgcca-ggctggagtgcagtggcgcatctcagctcactgaaacctctgcctcctgggttcaagcgattcc
i nomLeu3.chr6              C 0 I 321
s macNem1.NW_012011056v1      6240494 110 -   6271500 tttttcttttgat---tttatt-tattta---tttttgagacagaatcttgctctgtccatcgcca-ggctggagtgcagtggcacatctca-------------tctgcctcccgggttcaagtgattcc
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5133651 110 +   5160157 tttttcttttgat---tttatt-tattta---tttttgagacagaatcttgctctgtctatcgcca-ggctggagtgcagtggcacatctca-------------tctgcctcccgggttcaagtgattcc
i cerAty1.NW_012001384v1    C 0 C 0
s colAng1.NW_012116021v1       301941 126 +   4111199 Tttttctttgattttatttatt-tattta---tttttgagacagaatcttgctctatctatcgcca-cgctggagtgcagtggcacatctcagctcactgaaacctctgcctcccgggttcaagcaattcc
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530            6746937 110 -  36342412 --------------Cttttgtt-tttttggtttttttgagacagagcctcaagct----atccccctgggtagagtgccatgg--catcacagctcacagcaatctccaactcctgggctcaagcgagtct
i otoGar3.GL873530          I 497 C 0
e aotNan1.NW_018511953v1       721775  41 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548   1 +   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macFas5.chr7              106508942   1 - 171882078 I
e rheMac8.chr7               62579585 643 + 169600520 I

a score=83817.000000
s hg38.chr15_KI270850v1_alt    242316 34 +    430880 cctgcctcagcctcctgagtagctgggactacag
s panTro5.chrY               25704107 34 -  26350515 cctgcctcagcctcctgagtagctgggactaaag
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       340953 34 +    378907 cctgcctcagcctcctgagtagctgggactacag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18842370 34 - 121039945 cctgcctcagcctcctgagtagctgggactacag
i nomLeu3.chr6              I 321 C 0
s macNem1.NW_012011056v1      6240604 34 -   6271500 cctgcctcagcctcctgagtagctgaaactacag
i macNem1.NW_012011056v1    C 0 I 811
s cerAty1.NW_012001384v1      5133761 34 +   5160157 cctgcctcagcctcctgagtagctgaaactacag
i cerAty1.NW_012001384v1    C 0 I 487
s colAng1.NW_012116021v1       302067 34 +   4111199 cctgcctcagcctcctgagtagctgaaactacag
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530            6747047 34 -  36342412 cctgcctcagcctcccaagtagctgggaccacag
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018511953v1       721775 41 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548  1 +   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e macFas5.chr7              106508942  1 - 171882078 I
e rheMac8.chr7               62579585 643 + 169600520 I

a score=25797.000000
s hg38.chr15_KI270850v1_alt    242350 33 +    430880 gcacccgccagcgcgcccagctaa--tttttttgt
s panTro5.chrY               25704141 35 -  26350515 gcatccgccagtgcgcctagctaatttttttttgt
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       340987 33 +    378907 gcacccgccagcgtgcccagctaa--tttttttgt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18842404 33 - 121039945 gcacctgccaccgcgcccagctaa--tttttttgt
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012116021v1       302101 35 +   4111199 gtgtgtgccaccacacctggctattatttttttaa
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530            6747081 33 -  36342412 gcgcctgccacaacgcccggccat--ttttttggt
i otoGar3.GL873530          C 0 I 1213
e aotNan1.NW_018511953v1       721775 41 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548  1 +   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012001384v1      5133795 487 +   5160157 I
e macNem1.NW_012011056v1      6240638 811 -   6271500 I
e macFas5.chr7              106508942  1 - 171882078 I
e rheMac8.chr7               62579585 643 + 169600520 I

a score=72646.000000
s hg38.chr15_KI270850v1_alt    242383 93 +    430880 atttttttagtagagatggggtttctccgtgttagccaggacggtctcgatctcctgacctcgtgatccgcccacctcggcctcccaaagtgc
s panTro5.chrY               25704176 93 -  26350515 atttttttagtagagatggggtttctctgtgttagccaggacggtctcaatctcctgtcctcgtgatgcgcccacctcggcctcccaaagtgc
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       341020 93 +    378907 atttttttagtagagatggggtttctccatgttagccaggacagtctccatctcctgacctcgtgatccgcccacctcggcctcccaaggtgc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18842437 93 - 121039945 atttttttagtagagatgaggtttctctgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccacctcagcctcccaaagtgc
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012116021v1       302136 90 +   4111199 a---ttttagtagagacggagtttcaccatgttggccaggatggtctcgatctcctgaccttgtggtccacccgccttgggctcccaaggtgc
i colAng1.NW_012116021v1    C 0 I 366
e aotNan1.NW_018511953v1       721775 41 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6747114 1213 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548  1 +   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012001384v1      5133795 487 +   5160157 I
e macNem1.NW_012011056v1      6240638 811 -   6271500 I
e macFas5.chr7              106508942  1 - 171882078 I
e rheMac8.chr7               62579585 643 + 169600520 I

a score=39121.000000
s hg38.chr15_KI270850v1_alt    242476 74 +    430880 tgagattagaggcgcgagccaccgtgcccggccCATCTTGCTTTTCTTAAAAAGGAACCTTCAGTAAATATTTG
s panTro5.chrY               25704269 74 -  26350515 tgagattagaggcacgagccaccatgcccggccCATCTTGTTTTTCTTAAAAAGGAACCTTCAGTAAATATTTG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       341113 74 +    378907 tgagattagaggcgcgagccaccgtgcccggccCATCTTGTTTTTCTTAAAAAGGAACCTTCAGTAAATATTTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18842530 74 - 121039945 tgggattacaggcgtgagccaccatgcccagccCATCTTGTTTTTCTTAAAAAGGAACCTTCAGTAAATATTTG
i nomLeu3.chr6              C 0 C 0
e aotNan1.NW_018511953v1       721775 41 -   3745603 I
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6747114 1213 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       302226 366 +   4111199 I
e manLeu1.NW_012105520v1      1093548  1 +   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012001384v1      5133795 487 +   5160157 I
e macNem1.NW_012011056v1      6240638 811 -   6271500 I
e macFas5.chr7              106508942  1 - 171882078 I
e rheMac8.chr7               62579585 643 + 169600520 I

a score=20533.000000
s hg38.chr15_KI270850v1_alt    242550 25 +    430880 GTTTCTGTGGCTTCAGCTTTAACTC
s panTro5.chrY               25704343 25 -  26350515 GTTTCTGTGGCTTCAGCTTTAATTC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       341187 25 +    378907 GTTTCTGTGGCTTCAGCTTTAATTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18842604 25 - 121039945 GTTTCTGTGGCTTCAACTTTAATTC
i nomLeu3.chr6              C 0 C 0
s aotNan1.NW_018511953v1       721816 25 -   3745603 GTTTCTGTGGCTTCAGCTATAAATT
i aotNan1.NW_018511953v1    I 41 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6747114 1213 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       302226 366 +   4111199 I
e manLeu1.NW_012105520v1      1093548  1 +   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012001384v1      5133795 487 +   5160157 I
e macNem1.NW_012011056v1      6240638 811 -   6271500 I
e macFas5.chr7              106508942  1 - 171882078 I
e rheMac8.chr7               62579585 643 + 169600520 I

a score=29425.000000
s hg38.chr15_KI270850v1_alt    242575 29 +    430880 AGATTACAGTTTTCAAAGCACTGTTGCCT
s panTro5.chrY               25704368 29 -  26350515 AGATTACAGTTTTCAAAGCAGTGTTGCCT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       341212 29 +    378907 AGATTACAGTTTTCAAAGCAGTGTTGCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18842629 29 - 121039945 AGATTACAGTTTTCAAAGCAGTGTTGCCT
i nomLeu3.chr6              C 0 C 0
s aotNan1.NW_018511953v1       721841 29 -   3745603 AGATTATAGTCCTCAGAGcagtgtttcct
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6748327 23 -  36342412 AGATTATAATTCTCAAAGCAGTG------
i otoGar3.GL873530          I 1213 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       302226 366 +   4111199 I
e manLeu1.NW_012105520v1      1093548  1 +   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e cerAty1.NW_012001384v1      5133795 487 +   5160157 I
e macNem1.NW_012011056v1      6240638 811 -   6271500 I
e macFas5.chr7              106508942  1 - 171882078 I
e rheMac8.chr7               62579585 643 + 169600520 I

a score=488001.000000
s hg38.chr15_KI270850v1_alt    242604 149 +    430880 AAAGTTGTTTGTGCAAAATTGTTTTCTGTGACTTGAACCTAGTTATTCTGAAACTAATATATAATAATAATGGTTTTTCCCCAATTTATAATAGAGAACAGTACAAAGTAACAGCGGGAACGTCTGTTAGTGGGTGAAAGCACATAATG
s panTro5.chrY               25704397 149 -  26350515 AAAGTTGTTTGTGCAAAATTGTTTTCTGTGACTTGAACCTAGTTATTCTGAAGCTAATATATAAGAATAATGGTTTTTCCCCAATTTATAATAGAGAACAGTACAAAGTAACAGTGGGAATGTCTGTTAGTTGGTGAAAGCACATAATG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       341241 149 +    378907 AAAGTTGTTTGTGCAAAATTGTTTTCTGTGACTTGAACCTAGTTATTCTGAAGCTAATATATAATAATAATGGTTTTTCCCCAATTTATAATAGAGAACAGTACAAAGTAACAGCGGGAACGTCTGTTAGTGGGTGAAAGCACATAATG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18842658 149 - 121039945 AAAGTTGTTTGTGCAAAATTGTTTTCCATGACTTGAACCTAGTTATTCTGAAGCTAATATATAATAATAATGGTTTTCCCCCAATTTATAATAGAGAACAGTACAAAGTAACAGGGGGAATGTCTGTTAGTGGGTGAAAGCACATAATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62580228 149 + 169600520 AAAGTTGTTTGTGCAAAATTGTTTTCCATGACTTGAACCTAGTTATTCTGAAGCTAATAGATAATAATAATGGCTTTTCCCCAATTTATAATAGAAAACAGTACAACGTAACAGAGGGAATGTTTGTTAGTGGGTGAAAGCACATGATG
i rheMac8.chr7              I 643 C 0
s macNem1.NW_012011056v1      6241449 149 -   6271500 AAAGTTGTTTGTGCAAAATTGTTTTCCATGACTTGAACCTGGTTATTCTGAAGCTAATAGATAATAATAATGGCTTTTCCCCAATTTATAATAGAAAACAGTACAACGTAACAGAGGGAATGTTTGTTAGTGGGTGAAAGCACATGATG
i macNem1.NW_012011056v1    I 811 C 0
s cerAty1.NW_012001384v1      5134282 149 +   5160157 AAAGTTGTTTGTGCAAAATTGTTTTCCATGACTTGAACCTAGTTATTCTGAAGCTAATAGATAATAATAATGGCTTTTCCCCAATTTGTAATAGAAAACAGTACAACGTAACAGAGGGAATGTTTGTTAGTGGGTGAAAGCACATGATG
i cerAty1.NW_012001384v1    I 487 I 3
s colAng1.NW_012116021v1       302592 149 +   4111199 AAAGTTGTTTGTGCAAGGTTGTTTTCCATGACTTGAACCTAGTTATTCTGAAGCTAATAGATAATAATACTGGCTTTTCCCCAATTTATAATAGAAAACAGTACAACGTAACAGAGGGAATGTTTGTTAGTGGGTGAAAGCACATAATG
i colAng1.NW_012116021v1    I 366 C 0
s aotNan1.NW_018511953v1       721870 149 -   3745603 aaaattgtttgtgcgaaattgttttccatgacttgaacttagttgttctgaagcttatatatgataataatggcttttccccaatttacaaaagaaaACCATACAAAGTAACAGAGCAAATGTCTATTAGTGGGTGAAAGCACATGACG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6748350 115 -  36342412 -------------------------CTTTAACTTGAACCTAG---TTCAGCACCTAAAAGCTAGTAATAAT--CTTTTCCCCAACTCATAATAGGAAACAGCACAAATGAACAAAGTAAA----TGTTAATGGATGAAAGCACATAATG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548   1 +   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macFas5.chr7              106508942   1 - 171882078 I

a score=234083.000000
s hg38.chr15_KI270850v1_alt    242753 104 +    430880 ---CATAGTTCATTAGCTTTTT---TAAAAAATCACATGTAATTGTGTTACA-AAAATA-TATGTATAGTAATGGCATTTACTTGGTATTACCTGGTTTGTGTGATAGAATA
s panTro5.chrY               25704546 104 -  26350515 ---CATAGTTCATTAGCTTTTT---TAAAAAATCACATGTAATTGTGTTACA-AAAATA-TATGTATACTAATGGCATTTACTTGGGATTACTTGGTTTGTGTGATAGAATA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       341390 104 +    378907 ---CATAGTTCATTAGCTTTTT---TAAAAAATCACATGTAATTGTGTTACA-AAAATA-TATGTATGGTAATGGCATTTACTTGGTATTACTTGGTTTGTGTGATAGAATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18842807 104 - 121039945 ---TGTAGTTCATTAGCTTTTT---AAAAAAATCACATGTAATTGTGTTCCA-AAAATA-TATGTATAGTAATGGCATTTACTTGGTATTACTTGGTTTGTGTGATAGAATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62580377 104 + 169600520 ---CTTAGTTCATTAGCTGTTT---AAAAAAATCACATGTAATTGTATTCCA-AAAATATTATGTATAGTAATGGCATTTA-TTGGTATTACTTGGTTCATGTGATAGAATA
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      6241598 104 -   6271500 ---CTTAGTTCATTAGCTTTTT---AAAAAAATCACATGTAATTGTATTCCA-AAAATATTATGTATAGTAATGGCATTTA-TTGGTATTACTTGGTTCATGTGATAGAATA
i macNem1.NW_012011056v1    C 0 C 0
s colAng1.NW_012116021v1       302741 106 +   4111199 ---CTTAGTTCATTAGCTTTTT-TAAAAAAAATCACATGTAATTGTATTCTA-AAAATATTATGGATAGTAATGGCATTTA-TTGGTATTACTTGGTTCATGTGATAGAATA
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1       722019 100 -   3745603 ---CTTAGTTTATTAACTTTTTTTTAAAAAAATCACATGTAATTGTGTTTAA-AAAAAA-------TAGCAATGGCATTTC-TTGGTAGTACTTGGTTTGTGTGATAGATAA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6748465 103 -  36342412 CTTATTAGTTCATTACCTTTTT-------AATCAACACATAATTGTGTTTAAGAAAATA-TGTATGTGTTGATAGCATTTT-ATGGTAGTATTCAGTTCATGTGGTGGAATA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548   1 +   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e cerAty1.NW_012001384v1      5134431   3 +   5160157 I
e macFas5.chr7              106508942   1 - 171882078 I

a score=1783215.000000
s hg38.chr15_KI270850v1_alt    242857 561 +    430880 AAATATTAGAATTTTATGGTGTTTGAGttagttatctattgctctgtaacaaactgagcagcttaaaataacaaacattatct--cagtttctgtgggtcaggattc--tgtccag-tttaccttgggttcactggctt--ggcctctcaccaggcagtgaaggtgtt--ggtggtggctgtgatcatcccaaggcaggatagggagagaatctgtctccaagctcag----------gttggcaggattcatc---tcagaggctgctggactggg--cctccgtttctagatggctattggtcagaggctttttacaataccttgtcacgtgggcctctccatagggcacctcatcacatggcaactggcttccatcagagggagcaatggaaagagcaggagaagggtgaccaaggcaggcat--cgtagtctccttgtagcctcacctcagaagcgatg-----ttacttttgctgtattctctttgttagaagtgagtcactaggtccaggggtgg-aattttacaagggtgtgaatggcaggaggtgagggtgatcagggcca-ttt-agaggctgcctac--caGTGTTG
s panTro5.chrY               25704650 561 -  26350515 AACTATTAGAATTTTATGGTGTTTGAGttagttatctattgctctgtaacaaatttagcagcttaaaataacaaacattatct--cagtttctgtgggtcaggattc--tgtccag-tttaccttgggttcactggctt--ggcctctcaccaggcagtgaagatgct--ggtggcggctgtgatcatctcaaggcaggatagggagagaatctgtctccaagctcag----------gttggcaggattcatc---tcagaggctgctggactagg--cctctgtttctagatggctattggtcagaggccttttacaataccttgtcatgtgggcccctccatagggcacctcatcacatggcaactggcttccatcagagggagcaatggaaagagcaggagaagggtgaccaaggcaggcat--cgtagtctcttcgtagcctcacctcagaagtgatg-----ttacttttgctgtattctctttgttagaagtgagtcactaggtccaggagtgg-aattttacaagggtgtgaatggcaggaggtgagggtgatcagggcca-ttt-agaggctgcctac--caTTCTTG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       341494 561 +    378907 AAATATTAGAATTTTATGGTGTTTGAGttagttatctattgctctgtaacaaattgagcagcttaaaataacaaacattatct--cagtttctgtgggtcaggattc--tgtccag-tttaccttgggttcactggctt--ggcctctcaccaggcagtgaaggtgtt--gatggcggctgtgatcatcccaaggcaggatagggagagaatctgtctccaagcttag----------gttggcaggattcacc---tcagaggctgttggactggg--cctccgtttctaggtggctattggtcagaggccttttacaataccttgtcacgtgggcctctccatagggcacctcatcacatggcaactggcttccatcagagggagcaatggaaagagcaggagaagggtgaccaaggcaggcat--cgtagtctccttgtagcctcacctcagaagcgatg-----ttacttttgctgtattctctttgttagaagtgagtcactaggtccaggtgtgg-aattttacaagggtgtgaatggcaggaggtgagggtgatcagggcca-ttt-agaggctgcctgc--caGTGTTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18842911 556 - 121039945 AAATGTTAGAATTTTATGGTGTTtgaattagttatctattgctctgtaacaaatttagcagcttaaaacaacaaacattatctcacagtttctgtgggtcaggattc--tgtgcag-tttaccttgggttcactggctt--ggcctctgaccaggcagtgaaggtgtt--ggtggcggctgtgatcatcccaaggcaggatagggagagaatccgtctccaagctcat----------gttggcaggattcatc---tcagaggctgttggactggg--cctccgtttctagatggctgttggtcagaggtcttttacaataccttgccatgtggacctctccatagggcacctcatcacatggcaactggcttccatcagagggagcagtggaaagagcaggtgaagggtgaccaaggcaggcat--cgtagtctccttgtagcctcatctcagaagtgatgtt--attactttggctgtattctctttgttagaagtgagtcactaggtccaggggtgg-aattttacaagggtgtgaatggcaggaggtgagggtgatc------------agaggctgcctac--caGTGTTG
i nomLeu3.chr6              C 0 I 315
s rheMac8.chr7               62580481 566 + 169600520 AAATGTTAGAATTTTATGGTGTTtgaattacttatctattgctctgtaacacatttagcagcttaaaacaataaatgttatgtcacagtttctgtgggtcaggagtc--tctgcag-tttaccttggattcactggctt--ggcctctcaccaggcagtgaaggtgtt--ggaggtggctg-gatcatcccaaggcaggatagggagataatccacctccgagctcac----------gttggcaggattcatc---tcagaggctgttggactggg--cctccttttctagatggctactggtcagaggctttttgcaataccttgccatgtgggcctctccatagggcacctcatcacatggcaactggcttccatcagagggagcaatggagagagcaggagaagggtgaccaaggcaggcat--catagtctccttgtagcctcacctcagaagtgatgtt--attacttttgctgtatactccttggtagaagtgagtcactaggtccagggatgggaattttacaaaggtgtgaatggcaggaggtgagggtgatcgggccca-ttt-agaggctgcctac--caGTGTTG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      6241702 566 -   6271500 AAATGTTAGAATTTTATGGTGTTtgaattacttatctattgctctgtaacacatttagcagcttaaaacaataaatgttatgtcacagttcctgtgggtcaggagtc--tgtgcag-tttaccttggattcactggctt--ggcctctcaccaggcagtgaaggtgtt--ggaggtggctg-gatcatcccaaggcaggatagggagagaatccgtctccaagctcac----------gttggcaggattcatc---tcagaggctgttggactggg--cctccttttctagatggctactggtcagaggctttttacaataccttgccatgtgggcctctccatagggcacctcatcacatggcaactggcttccatcagagggagcaatggagagagcaggagaagggtgaccaaggcaggcat--catagtctccatgtagcctcacctcagaagtgatgtt--attacttttgctgcattctctttgttagaagtgagtcactaggtccagggatgggaattttacagaggtgtgaatggcaggaggtgagggtgatcgggccca-ttt-agaggctgcctac--caGTGTTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5134434 566 +   5160157 AAATGTTAGAATTTTATGGTGTTtgaattacttatctattggtctgtaacacatttagcagcttaaaacaataaatgttatgtcatagtttctgtgggtcaggagtc--tgtgcag-tttaccttggattcactggctt--ggcctctcaccaggcagtgaaggtgtt--ggaggtggctg-gatcatcccaaggcaggatagggagagaatccgtctccaagctcac----------gttggcaggattcatc---tcagaggctgttggactggg--cctccttttctagatggctactggtcagaggctttttgcaataccttgccatgtgggcctctccatagggcacctcatcacatggcaactggcttccatcagaaggagcaatggagagagcaggggaagggtgaccaaggcaggcat--cgtagtctccttgtagcctcacctcagaagtgatgtt--attacttttgctgtatactccttggtagaagtgagtcactaggtccagggatgggaattttacaaaggtgtgaatggcaggaggtgagggtgatcgggccca-ttt-agaggctgcctac--caGTGTTG
i cerAty1.NW_012001384v1    I 3 C 0
s colAng1.NW_012116021v1       302847 568 +   4111199 AAATGTTAGAATTTTATGGTGTTTAAattacttatctattgctctgtaacacatttagcagcttaaaacaataaatgttatctcatagtttctgtgggtcaggagtc--tgtgcag-tttaccttggattcactggctt--ggcctctcaccaggcagtgaaggtgtt--ggaggtggctgtgatcattccaaggcaggatagggagagaatccgtctccaagctcac----------gttggcaggattcatc---tcagaggctgttggactggg--cctccttttctagatggctactggtcagaggtcttttgcaataccttgccatgtgggcctctccatagggcacctcatcacatggctactggcttccatcagagggagcaatggagagaacaggagaagggtgaccaaggcaggcat--catagtctccttgtagcctcacctcagaagtgatgtt--attatttttgctgtattctctttgttagaagtgagtcactaggtccaggggtggaagttttacaagggtgtgaatggcaggaggtgagggtgatcagggccatttt-agaggctgcctac--caGTGTTG
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1       722119 483 -   3745603 AAATATTAGAATTTTATGGTATGTGAATTA---atctattgctctgtaacaaatttagcagcttaaagcaacaaacattatctcacagtt-ctgtgggtcaggattc--tgtgcag-tttaccttgggttcactggctt--ggcctctcaccaggcagtgaaggtatt--ggtggcagcagtgatcatcccaaggcaggata-ggagagaatccgtctccgagctcactcgtgtagatgttggcaggattcatc---tcacaggctgttggaccggg--tctctgtttcta-atggctgttggtcaagggccttttacaataccct-----gtgg--------atagggcacctcatcacatggc-----------------------------------------------------------------------------agcctaatctcagaagtgatgtt--atgacttttgctgtattctctttgttagaagtgagtcactaggtccaggggaaggaattttacaagtatgtgaatgccaggaggtgagggtgatcggggcca-ttt-agaggctgcctgc--caGTGTTG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6748568 571 -  36342412 -AATACT-GGATTTCATGATGTTtgaattagttatctactgccctgtaacaaatgtagcagcttaaaactataaacattatca--cagtttctgtgggtcaggtgtcagtgtgcagttttacctcaagtatgctgggtcagggtctctcact------taaaggtatttaggtggaggctgcagtcacctcaggattggacggggagagaatctgtctct-agctcactcacaca---gttggcaggattcatctcttcacaggctgttggactgagaccctcatttgctagctgactattggtcagaagtctttttcaattctttgccatgtgggcctctccatagggcagctcaccacttggcagccaacttccactggaggaagcaatagaaagagcaggagagagtcagc--aggcagacgttctatactctttttgcaacctactcatagaggtgacattccattacttttcctgtattc----tgtcaaaggt--gtcagtaggtccaggggagg-aattttacaagggtgtgaatatgtggaggtgaggattattgggtcca-tttgagaggctgcctactgcaGTGC--
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548   1 +   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macFas5.chr7              106508942   1 - 171882078 I

a score=278537.000000
s hg38.chr15_KI270850v1_alt    243418 81 +    430880 AAGAAAATTGTTGACTTCTATGAGCTGTAGCA-GCAGACAGT-GCTATGCAAGGAGAATGGCTGTCTCAGAAGTCCAGCTCCT
s panTro5.chrY               25705211 81 -  26350515 AAGAAAATTGTTGACTTCTATGAGCTGTAGCA-GCAGTCAGT-GCTATGCAAGGAGAATGGCTGTCTCAGAAGTCCAGCTCCT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       342055 81 +    378907 AAGAAAATTGTTGACTTCTATGAGCTGTAGCA-GCAGATAGT-GCTATGCAAGGAGGATGGCTGTTTCAGAAGTCCAGCTCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18843782 81 - 121039945 aagaaaATTGTTGACTTCTATGAGCTGTAGCA-GCAGACAGT-GCTATGCAAGGAGAATGGCTATCTCAGAAGTCCAGCTCCT
i nomLeu3.chr6              I 315 C 0
s rheMac8.chr7               62581047 81 + 169600520 AAGAAAATTGTTGACTTCTATGAGCTGTAGCA-GCAGACAGT-GCTGTGCAAGGAGAATGGCTGTCTGAGAAGTCCAGCGCCT
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      6242268 81 -   6271500 AAGAAAATTGTTGACTTCTATGAGCTGTAGCA-GCAGACAGT-GCTGTGCAAGGAGAATGGCTGTCTGAGAAGTCCAGCGCCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5135000 81 +   5160157 AAGAAAATTGTTGACTTCTATGAGCTGTAGCA-GCAGACAGT-GCTATGCAAAGAGAATGACTGTCTGAGAAGTCCAGCGCCT
i cerAty1.NW_012001384v1    C 0 C 0
s colAng1.NW_012116021v1       303415 81 +   4111199 AAGAAAATTGTTGACTTCTATGAGCTGTAGCA-GCAGACAGT-GCTATGCAAGGAGAATGGTTGTCTCAGAAGTCCAGCGCCT
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1       722602 79 -   3745603 AAGAAAATTGTTGACTTGTATGAGCTGTAGCA-GCAGACAGT-GCTATGCGAGGAGAATGAC--TCTTAGAAGTCCAGCTCCT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6749139 82 -  36342412 AAGAACATCATTGA-TGCGAGGAGCTGTGGCACACAGACCATGGGTATGCAAGGAGAATGGTTGTCTCAAAAGTCTAACTGCT
i otoGar3.GL873530          C 0 I 522
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548  1 +   1458659 I
e chlSab2.chr29              21075958  0 -  24206276 I
e macFas5.chr7              106508942  1 - 171882078 I

a score=25154.000000
s hg38.chr15_KI270850v1_alt    243499 8 +    430880 CACATGGG
s panTro5.chrY               25705292 8 -  26350515 CACATGGG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       342136 8 +    378907 CACATGGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18843863 8 - 121039945 CACATGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62581128 8 + 169600520 CATATGGG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      6242349 8 -   6271500 CATATGGG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5135081 8 +   5160157 CATATGGG
i cerAty1.NW_012001384v1    C 0 C 0
s colAng1.NW_012116021v1       303496 8 +   4111199 CATATGGG
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1       722681 8 -   3745603 CACATGGG
i aotNan1.NW_018511953v1    C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6749221 522 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548 1 +   1458659 I
e chlSab2.chr29              21075958 0 -  24206276 I
e macFas5.chr7              106508942 1 - 171882078 I

a score=1901368.000000
s hg38.chr15_KI270850v1_alt    243507 551 +    430880 TTTAAACGTGTTGCCTTTTCCCCC-TGATACATTTTGTTTAAATCCATGGTCATCTTGCCATTTAGTGGTGTGGTTTAATTGCATATTTGGGTTAGTCTGTATGTAAA--CATTTAACATAGGTGTCTCTGGGTTAAACAGGAATCCTATTCATCTTCTTCACCGATATGGTCTGTGGACTCTGATGAGCCAAATCTGACATCAGTTCTGGAACATCTAGAAGATACTAAGGAGAA---CAGTTCAGTAAGGAAAGAAACCAAGCTATTTTCTCTTTTCCTCATGa--acattatatttagaaattaaatgttaagtgataatattatataaaaacatgattaataact-----ataatcttaGAGGAATTAAAGTCTGGG--------TATTTTAAGTCCTCCAAATCTTATTTACTACCTGGTTTCT-CTTTATTATTTCCCACATGTATAATCTTAGTTTAGATTAGCAATTCGGGATCTCTTTTTCCCTGAATTCTAACCATTAAGCCAAGCAAGCATTTTGGGTGGAGACCACTAGCCAAGGTGGGAAGTAGAAAGAAGACCAAGGTG
s panTro5.chrY               25705300 552 -  26350515 TTTTAATGTGTTGCCTTTTCCCCC---ATACATTTTGTTTCAATCCATGGTCATCTTGCCATTTAGTGGTGTGATTTAATTGCATATTTGGGTTAGTCTGTATGTAAA--CATTTAACATAGGTGTCTCTGGGTTAAACAGGAATCCTATTCATCTTCTTCACCGATATGGTCTGTGGACTCTGATGAGCCAAATCTGACATCAGTTATGGAACGTCTAGAAGATACTAAGGACAACAGCAGTTTGGTGAGGAAAGAAACCAAGCTATTTTCTCTTTTTCTCATGA--ACATTATATTTAGAAATTAAATGTTAAGTGATAATATAATATAAAACCATGATTAAAAACT-----ATAATCTTAGAGGAATTAAAGTCTGGA--------TATTTTAAGTCCTCCAAATCTTATTTACTACCTGGTTTCT-CTTTATTATTTCCCACATGTATAATCTTAGTTTAGATTAGCAATTCGGGATCTCTTTTTCCCTGAATTCTAACCATTAAGCCAAGCAAGCATTTTGGGTGGAGACCACTAGCCAAGGTGGGAAGTAGAAAGAAGACCAAGGTG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       342144 549 +    378907 TTTAAACGTGTTGCCTTTTCCCCC---ATACATTTTGTTTCAATCCATGGTCATCTTGCCATTTAGTGGTGTGGTTTAATTGCATATTTGGGTTAGGCTGTATGTAAA--CATTTAACATAGGTGTCTCTGGGTTAAACAGGAATCCTATTCATCTTCTTCACCGATATGGTCTGTGGACTCTGATGAGCCAAATCTGACATCAGTTCTGGAACGTCTAGAAGATACTAAGGACAA---CAGTTCAGTGAGGGAAGAAACCAAGCTATTTTCTCTTTTCCTCATGa--acattatatttagaaattaaatgttaagtgataatattatataaaaacatgattaataact-----ataatcttaGAGGAATTAAAGTCTGGG--------TATTTTAAGTCCTCCAAATCTTATTTACTACCTGGTTTCT-CTTTATTATTTCCCACATGTATAATCTTAGTTTAGATTAGCAATTCGGGATCTCTTTTTCCCTGAATTCTAACCATTAGGCCAAGCAGGCATTTTGGGTGGAGACCACTAGCCAAGGTGGGAAGTAGAAAGAAGACCAAGGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18843871 553 - 121039945 TTTTAATGTGTTGCCTTTTCCCCC-TGATACATTTTGTTTAAATCCATGGTCATCTTACCATTTAGTGGTGTGGTTTAATTGCATATTTGGGTTAGTCTGTATGTAAA--CATTTAACATAGGTGTCTCTGGGTTAAACAGGAATCCTATTCATCTTCTTCACCGATATGGTTTGTGGACTCTGATGAGCCAAATCTGACATCAGTTCTGGAATGTCTAGAAGATACTAAGGACAA---CAGTTCAGTGAGGAAAGAAGCCAAGCTATTTTCTCTTTTCCTCATGAatatattatatttagaaattaaatgttaagtgataattttatataAAAGCATGATTAATGACT-----ATAATCTTAGAGGAATTAAAGTCTGGG--------TATTTTAAGTCCTCCAAATCTTACTTACTACCTGGATTCT-CTTTATTATTTCCCACATGTATAACCTTAGTTTAGATTAGGAATTCGGGATCACTTTTTCCCTGAATTCTAACCATTAAGCCAAGCAAGCATTTTGGGTGGAGACCACTAGCCAAGGTGGGAATTAGAAAAAAGACCAAGGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62581136 551 + 169600520 TTTTAATGTGTTACCTTTTCCCCC-TGATACATTTTGTTTAAATCCATGGTCATCTTGCCATTTAGTGGTGTGGTTTAATTATATATTTGGGTTAGTCTGTATGTAAA--CGTTTAACACAGGTGTCTCTGTGCTGAACAGGAATCCTATTCATCTTCTTCACCAATATGATTTGTGGACTCTGATGAGCCAAATCTGACATCAGTTCTGGAATATCTAGAAGATACTAAGAACAA---CAATTCGGTGAGGAAAAAAGCCAAGCTATTTTCTCTTTTCCTCATGA--ACATTATATTTACAAATTAAATGTTAAGTGATAATATGATATAAAAGCATGATTAATAACT-----ATAATCTTAGAGGAATTAAAGTCTGGG--------TATTTTAAGTCCTCCAAATCTTATTTACTACCTGGTTTCT-CTTTATTATTTCCCACATGTATAACCTTAGTTTAGATTAGGAATTCAGGGTCTCTTTTTCCCTGAGTTCTAACCATTAAGCCAACCAAGCATTTTGGGTAGCGACCAGTAGCCAAGGTGGGAAGTAGAAAAAAGACCAAGGTG
i rheMac8.chr7              C 0 C 0
s macNem1.NW_012011056v1      6242357 551 -   6271500 TTTTAATGTGTTGCCTTTTCCCCC-TGATACATTTTGTTTAAATCCATGGTCATCTTGCCATTTAGTGGTGTGGCTTAATTGCATATTTGGGTTAGTCTGTATGTAAA--CGTTTAACACAGGTGTCTCTGTGCTAAACAGGAATCCTATTCATCTTCTTCACCAATATGGTTTGTGGACTCTGATGAGCCAAATCTGACATCAGTTCTGGAATATCTAGAAGATACTAAGAACAA---CAATTCGGTGAGGAAAAAAGCCAAGCTATTTTCTCTTTTCCTCATGA--ACATTATATTTACAAATTAAATGTTAAGTGATAATATGATATAAAAGCATGATTAATAACT-----ATAATCTTAGAGGAATTAAAGTCTGGG--------TATTTTAAGTCCTCCAAATCTTATTTACTACCTGGTTTCT-CTTTATTATTTCCCACATGTATAACCTTAGTTTAGATGAGGAATTCAGGGTCTCTTTTTCCCTGAATTCTAACCATTAAGCCAAGCAAGCGTTTTGGGTAGTGACCACTAGCCAAGGTGGGAAGTAGAAAAAAGACCAAGGTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5135089 545 +   5160157 TTTTAAT------CCTTTTCCCCC-TGATACATTTTGTTTAAATCCATGGTCATCTTGCCATTTAGTGGTGTGGTTTAATTGCATATTTGGGTTAGTCTGTATGTAAA--CGTTTAACACAGGTGTCTCTGTGCTGAACAGGAATCCTATTCATCTTCTTCACCAATATGGTTTGTGGACTCTGATGAGCCAAATCTGACATCAGTTCTGGAATATCTAGAAGATACTAAGAACAA---CAATTCGGTGAGGAAAAAAGCCAAGCTATTTTCTCTTTTCCTCATGA--ACATTATATTTACAAATTAAATGTTAAGTGATAATATGATATAAAAGCATGATGAATAACT-----ATAATCTTAGAGGAATTAAAGTCTGGG--------TATTTTAAGTCCTCCAAATCTTATTTACTACCTGATTTCT-CTTTATTATTTCCCACATGTATAACCTTAGTTTAGATTAGGAATTCAGGGTCTCTTTTTCCCTGAATTCTAACCATTAAGCCAACCAAGCATTTTGGATAGCGACCACTAGCCAAGGTGGGAAGTAGAAAAAAGACCAAGGTG
i cerAty1.NW_012001384v1    C 0 C 0
s colAng1.NW_012116021v1       303504 550 +   4111199 TTTTAATGTGTTGCCTTTTCCCCC-TGATACATTTTGTTTAAATCCATGGTCATCTTGCCACTTAGTGGTGTGGTTTAATTGCATATTTGGGTTAGTATGTATGTAAA--TGTTTAACACAGGTGTCTCTGTGCTAAACAGGAATCCTATTCATCTTCTTCACCACTATGGTTTGTGGACTCTGATGAGCCAAATCTGACATCAGTTCTGGAATGTCTAGAAGATACTAAGAACAA---CAATTCGGTGAGGAAAAAAGCCAAGCTATTTTCTCTTTTCCTCATGA--ACATTATATTTACAAATTAAATGTTAAGTGATAATATGATATAAAAGCATGATTAATAACT-----ATAATCTTAGAGGAATTAAAGTCTGGG--------TATTTTAAGTCCTGCAAATCTTATTTACTACCTGGTTTCT-CTTTATTATTTCCCACATCTA-AACCTTAGTTTAGATTAGGAGTTCAGGATCTCTTTTTCCCTGAATTCTAACCGTTAAGCCAACCAAGTGTTTTGGGTAGCGACCAGTAGCCAAGGTGGGAAGTAGAAAAAAGACCAAGGTG
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1       722689 552 -   3745603 TTTTCATGTGTTGCCTCCCCGCCC---ATACATTTTGTTTAAATCCATGGTCATCTTGCCATTTAGTGGTGTGGTTTAATTGCATATTTAGGTTAATCTGTATGTAAA--TGTTTAACATAGGTGTTTCTGTTTTAAACAGGAATCCTATCCATCTTCTTCACCAATATGGTTTGTGGACTCTGATGACCCAAATCTGACATCAGTTCTGGAACGTATAGAAGATACTAAGAACAA---CAATTCGGTAAGAAAATAAGCCAAGCTATTTTCTCTTTTCCTCCTGA--ACATTATATTTAGAAATTAAATGTTAAGCGATACTATGATTTAAAAGCATGATTAATGATT-----ATAATCTTGGAGGAATTAAAGACTAGG-----TTTTTTTTTAATTTCTTCAAATTCTATTTACTACCTGGTTTCT-CTTTCTTATTTCCAACACATATAACCTTAATTTAGATTCCAAATTAAGGATCTCTTTTTCCCTGAATTCTAACCATTAAACCAAGCAAGCTTTTTTGGTGGAGACCACTAGCCAAGGTGGAAAGTAGAAAAAAGACTGTGGTG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6749743 549 -  36342412 TCTTAATGTGTTGCTTTTTCCCCTCTGATAAG--TTACTTAAATCCATGATCCTCTTGCCATTTAGTGATGTGGTTTCATTATAACT----GTCAGGCTGTATGTAAATGTGTTTAACATAGATGTTTCTAT----AACAGGAATCCTATCCATCTTCTTCACCCATATGGTTTGTGGACTCTGATGACCCCAATCTGACATCAGTTCTGGAACGTCTAGAAGATACTAAGAACAA---CAATTCGGTGAGAAAATAAGCCAAGCTACATTTTTTTTTTT---AGA--ACATTTTATAC---AATTAAGTATTAAGAGATAATGTGCTATAAAAGCATGATTAATGATTATTTGATAATATTAGAGGGGTTAAAACCAGGGGGTGTGTGTTTTTTAAGTCTTTCAAATTCTCTTTATTACTTAGTCTCTCCTTTTTCATTTCCCACATGTATAGCCTTAATTTAGATTAGGAATCATCGGTCTC-TTTTCCCTGAGTTCTAACCACTAAAGTGAGCAAACATTTTGGG-AGAGACCACTAGCCAAGGTGGGAAGT-GGAAGAAGACCAAGGTA
i otoGar3.GL873530          I 522 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1093548   1 +   1458659 I
e chlSab2.chr29              21075958   0 -  24206276 I
e macFas5.chr7              106508942   1 - 171882078 I

a score=1670354.000000
s hg38.chr15_KI270850v1_alt    244058 360 +    430880 GAAGTGAAGG----GAGAGATGGGGAGAATGACACCAGAACTAGTGGGAGGGAATTGCCTTTTCTTTCAAGGGTCTGTAAGTCTGCAGTAAAAGTCAAAGGTATTCAAATAGGAAGTTTTGTTTTTGTCTTTAGTATATAAAGAAGCATAACTTTCCATTTTGC-AAAAACTTTAGAAAtc-tt--ttttcttgattataaaacttataagcaaccattattgagaagattagtaa----aatat---------------aaaaaaataaaaatctcacataatttctctacctaata-taagtactgttgacatgatagctagtttctatcagtatgtattgcttctt------tgttatcaaagtacttatacccttacagatatgtttaaa
s panTro5.chrY               25705852 357 -  26350515 GAAGTGAAGG----GAGAGATGGGGAGAATGA-ACCAGAACTAGTGGGAGGGAATTGCCTTTTCTTTCAAGGGTCTGTAAGTCTGCAGTAAAAGTCAAAGGTATTCAAATAGGAAGTTTTGTTTTTGTCTTTAGTATATAAAGAAGCATAACTTTCCATTTTGC-AAAAACTTTAGAAACC-TG--TTTTCTTGATTATAAAACTTATAAGCAACCATTATTGAGAAGATTAGTAA----AATAT-------------TAAAAAAAATAAAAATCTCACATAATTTCT----CTAATA-TAACCACTGTTAACATTATAGCTAGTTTCTATCAGTATGTATTGCTTCTT------TGTTATCAAAGTACTTATACCCTTACAGATATGTTTAAG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       342693 363 +    378907 GAAGTGAAGGGAGAGAGAGATGGGGAGAATGACACCAGAACTAGTGGGAGGGAATTGCCTTTTCTTTCAAGGGTCTGTAAGTCTGCAGTAAAAGTCAAAGGTATTCAAATAGGAAGTTTTGCTTTTGTCTTTAGTATATAAAGAAGCATAACTTTCCATTTTGC-AAAAACTTTAGAAACC-TT--TTTTCTTGATTATAAAACTTATAAGCAACCATTATTGAGAAGATTAGTAA----AATAT---------------AAAAAAA-AAAAATCTCACATAATTTCTCTACCTAATA-TAACTACTGTTGACATGATAGCTAGTTTCTATCAGTATGTATTGCTTCTT------TGTTATCAAAGTACTTATACCCTTACAGATATGTTTAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18844424 357 - 121039945 GAAGTGAAGG----GAGAGATGGGGAGAATAACACCAGAACTGGTGGGAGGGAATTGCCTTTTCTTTAAAGGGTCTGTAAGTCTGCAGTAAAAGTCAAAGGTATTCAAATAGGAAGTTTTGTTTTTGTCTTTAGTATATAAAGAAGTATGACTTTCCATTTTGC-AAAAACTTTAGAAAAC-tt--ttttcttgattataaaacttataagcaaccattattg---agattagtaa----aatat---------------aaaaaaataaaaatctcacataatttctctacctaata-taaccactgttgacatAATAGCTGGTTTCTATCAGTATGTATTGCTTCTT------TGTTATCAAAGTACTTATACCCTTACAGatatgtttaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62581687 365 + 169600520 GAAGTGAAGG----CAGAGAT-GGGAGAATGACACCAGAACTAGTGGGAGGGAATTGCCTTTTCTTTCAGGGGTCTGTAAGTCTGCAGTAAAAGTCAAAGGTATTCAAATAGGAAGTTTTGTTTTTGTCTTTAGTATATAAAGAAATATAACTTCCCATTTTGC-AAAAACTTTAGAAACC-TTTGTTTTCTTGATTATAAAACTTATAAAGAACCATTATTGCGATCAGTAGTAA----AATAT---------------AAAAAAATTAAAATCTCACATAATTTCTCTACCTAATA-TAACTACTGTTGACATGATGGCTAGTTTCTATCAGTATGTATTTTTTTTT--TTTTTGTTATCAAAGTACATATACCCTTACAGATATGTTTAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106508943 363 - 171882078 gaAATGAAGG----CAGAGATGGGGAGAATGACACCAGAACTAGTGGGAGGGAATTGCCTTTTCTTTCAAGGGTCTGTAAGTCTGCAGTAAAAGTCAAAGGTATTCAAATAGGAAGTTTTGTTTTTATCTTTAGTATATAAAGAAGTATAACTTCCCATTTTGC-AAAAACTTTAGAAACC-ttttttttcttgattataaaacttgtaaagaaccattattgagaccagtagtaa----aatat---------------aaaaaaattaaaatctcacataatttctctacctaata-taaccactgttgacatgatggctagtttctatcagtatgtattttgtttt-----ttgttatcaaagtacatatacccttacagatatttttaaa
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011056v1      6242908 367 -   6271500 GAAGTGAAGG----CAGAGAT-GGGAGCATGACACCAGAACTAGTGGGAGGGAATTGCCTTTTCTTTCAGGGGTCTGTAAGTCTGCAGTAAAAGTCAAAGGTATTCAAATAGGAAGTTTTGTTTTTGTCTTTAGTATATAAAGAAATATAACTTCCCATTTTGC-AAAAACTTTAGAAACC-TTTGTTTTCTTGATTATAAAACTTATAAAGAACCATTATTGCGATCAGTAGTAA----AATAT---------------AAAAAAATTAAAATCTCACATAATTTCTCTACCTAATA-TAACTACTGTTGACATGATGGCTAGTTTCTATCAGTATGTATTTTTTTTTTGTTGTTGTTATCAAAGTACATATACCCTTACAGATATGTTTAAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5135634 362 +   5160157 GAAGTGAAGG----CAGAGAT-GGGAGAATGACACCAGAACTAGTGGGAGGGAATTCCCTTTTCTTTCAGGGGTCTGTAAGTCTGCAGTAAAAGTCAAAGGTATTCAAATAGGAAGTTTTGTTTTTGTCTTTAGTATATAAAGAAATATAACTTCCCATTTTGC-AAAAACTTTAGAAACCTTTTTTTTTCTTGATTATAAAACTTATAAAGAACCATTATTGAGATCAGTAGTAA----AATAT---------------AAAAAAATTAAAATCTCACATAATTTCTCTACCTAATA-TAACTACTGTTGACATGATGGCTAGTT----TCAGTATGTATTTTTTTTT--TTTTTGTTATCAAAGTACATATACCCTTACAGATATATTTAAA
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1093549 367 +   1458659 gaAATGAAGG----CAGAGAT-GGGAGAATGACACCAGAACTAGTGGGAGGGAATTGCCTTTTCTTTCAAGGGTCTGTAAGTCTGCAGTAAAAGTCAAAGGTATTCAAATAGGAAGTTTTGTTTTTATCTTTAGTATATAAAGAAGTATAACTTCCCATTTTGC-AAAAACTTTAGAAACC-TTTTTTTTCTTGATTATAAAACTTGTAAAGAACCATTATTGAGACCAGTAGTAA----AATAT---------------AAAATAATTAAAATCTCACATAATTTCTCTACCTAATA-TAACCACTGTTGACATGATGGCTAGTTTCTATCAGTATGTATTTTTTTTTGTTTTTTGTTATCAAAGTACATATACCCTTACAGATATGTTTAAA
i manLeu1.NW_012105520v1    I 1 C 0
s colAng1.NW_012116021v1       304054 363 +   4111199 GAAGTGAAGG----CAGAGATGGAGAGAATGACACCAGAACTAGTGGGAGGGAATTGCCTTTTCTTTCAAGGGTCTGTAAGTCTGCAGTAAAAGTCCAAGGTATTCAAATAGGAAGTTTTGTTTTTTTCTTTAGTATATAAAGAAGTATAACTTCCCATTTTTCAAAAAACTTTAGAAACC-TTT-TTTTCATGATTATAAAACTTATAAAGAACCATTATTGAGACCAGTAGTAA----AATAT---------------AAAAAAATTAAAATCTCACGTAATTTCTCTACCTAATA-TAACCACTGTTGACATGATGACTAGTTTCTATCAGTATGTTTTTTTTTTT-----TTGTTATCAAAGTACATATACCCTTACAGATATGTTTAAA
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1       723241 376 -   3745603 AAAGTGAAGG----GAGAGAAGAGTAGAATGACACCAGAACTAGTGTTAGGGAATCGCCTTTTCTTTCAAGGGTGTGTGAGTCTGCAGTAAAAGTCAAAGGTATTCAAACACAAAGTTTTATTTTTGTTTTTAGTATTTAAAGAAATATGAGTTTCCATTTTGC-AAATATTTTTAAAACC-ttt-ttttcttgattataaaactcatgtgcaaccattgtaaagaaaattagtaa----actacagaaaggaaaaaagaagaaaaattaaaatctcccataatttatttacctcata-caaccactgttgacacgatggctattttctaccagtatatattttttctt------tgctagtaaaatacatacacctttatacatatgtttaaa
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            6750292 344 -  36342412 GATGAGAAGG------GAAATTGATAGAATGACACCTGTACTAATGTTAGGGAATGTTCTTT--CTTCAAGGAT-TGTAAGTCTGTAGTAAGTGCCAAAAATGtttaaataga-----------ttttttttaatatataaaGAAATGTAACTTACCATTTTAC-AAAAATTTTGAACACC-TGT-TTTCTTTGGTTATAAAACTT----TAAGCCATTGT-GAgaaaactagaaaagccaaaag---------------aaaaaaattaaaatctcccacagtttctctacataaaagtaaccactgttgacatgacagctgttttctactagtat-tttttttCCTG------TACAAGTAAAATACATAATCCCTTACACGTATGTTTAAA
i otoGar3.GL873530          C 0 n 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              21075958   0 -  24206276 I

a score=1320503.000000
s hg38.chr15_KI270850v1_alt    244418 308 +    430880 tagttgaggtcatattctataaataTCTATA-----------------AATAgctgggtgctgtggctcacacctgtaatcccagcactttgggaggccgaggcaggcagatcac--aaggtcaggagtttgagaccagcctggccaatatggtgaaacctcatctctactaaaaatacaaaaattagcccggtgtggtggcaggtgactgtagtcccagctactcggcaggctgaggcaggagaattgcttgaacccaggaggcagaggtttcagtgagtcgagatcgcaccactgaggtccagcctgggtggcagagcaagactc
s panTro5.chrY               25706209 308 -  26350515 TAGTTGAGGTCatattctataaatatctgta-----------------aatagctgggtgctgtggctcacacctgtaatcccagcactttgggaggccgaggcaggcagatcac--aaggtcaggagtttgagaccagcctggccaatatggtgaaacctcatctctactaaaaatacaaaaattagccaaatgtggtggcaggtgactgtagtcccagctactcggcaggctgaggcaggagaattgcttgaacccaggtggcagaggtttcagtgagtcgagattgcgccactgcactccagcctgggcaacagagcaagactc
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       343056 308 +    378907 TAGTTGAGGTCatattctataaatatctata-----------------aatagctgggtgctgtggctcacacctgtaatcccagcactttgggaggccgaggcaggcagatcac--aaggtcaggagtttgagaccagcctggccaatatggtgaaacctcatctctactaaaaatacaaaaattagcccggtgtggtggcaggtgactgtagtcccagctactcggcaggctgaggcaggagaattgcttgaacccaggaggcagaggtttcagtgagtcgagattgcgccactgcactccagcctgggcaacagagcaagactc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18844781 308 - 121039945 tagtttaggtaatattctgtaaatatctata-----------------aatagccaggtgctgtggctcacacctgtaatcccatcattgtgggaggccgaggcaggcagatcac--aaggtcaggagtttgagaccagcctggccaatatggtgaaacctcatctctactaaaaatacaaaaattagccagacgtggtggcaggtgactgtagtcccagctactcggcaggctgaggcaggagaattgcttgaacccaggaggcagaggtttcagtgagtcgagatcacgccactgcactccagcctgggtgacagagcaagactc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62582052 298 + 169600520 TAGTTGAGGTCATAT----------TCTATA-----------------AATAgccgggtgctgtggctcatgcctgtaatcctagcactttgggaggccgaggcaggcagatcac--aaggtcaggagtttgagaccagcctcgccaatatggtgaaacctcatctctactaaaaatacaaaaagcagccggcagtggtggtgggtgcctgtagtcccagctacttggcaggctggggcaggagcattgcttgaacccaggagtcagaggtttcagtgagccgagatcgcgccactgtactccagcctgggggacagagcaagactc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106509306 298 - 171882078 tagttgaggtcatat----------tctata-----------------aatagccgggtgctgtggctcacgcctgtaatcctagcactttgggaggccgaggcaggcagatcac--aaggtcaggagtttgagaccagcctcgccaatatggtgaaacctcatctctactaaaaatacaaaaagcaaccggtagtggtggcgggtgcctgtagtcccagctacttggcaggctggggcaggagcatcgcttgaacccaggaggcagaggtttcagtttgccgagatcgcgccactgcactccagcctgggggacagagcaagactc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6243275 298 -   6271500 TAGTTGAGGTCATAT----------TCTATA-----------------AATAgccgggtgctgtggctcacgcctgtaatcctagcactttgggaggccgaggcaggcagatcac--aaggtcaggagtttgagaccagcctcgccaatatggtgaaacctcatctctactaaaaatacaaaaagcagccgagagtggtggtgggtgcctgtagtcccagctacttggcaggctggggcaggagcattgcttgaacccaggagtcagaggtttcagtgagccgagatcgcgccactgcactccagcctgggggacagagcaagactc
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5135996 298 +   5160157 TAGTTGAGGTCATAT----------TCTATA-----------------AATAgccgggtgctgtggctcacgcctgtaatcctagcactttgggaggccgaggcaggcagatcac--aaggtcaggagtttgagaccagcctcgccaatatggtgaaacttcatctctactaaaaatacaaaaagcagctgggagtggtggcgggtgcctgtagtcccagctacttggcaggctggggcaggagcatcgcttgaacccaggaggcagaggtttcagtgagccgagatcacgccactgcactccagcctgggggacagagcaagactc
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1093916 298 +   1458659 TAGTTGAGGTCATGT----------TCTATA-----------------AATAgccgggtgctgtggctcacgcctgtaatcctagcactttgggaggccaaggcaggcagatcac--aaggtcaggagtttgagaccagcctcgccaatatggtgaaacctcatctctactaaaaatataaaaagcagccggtagtggtggcaggtgcctgtagtcccagctacttggcaggctggggcaggagcatcgcttgaacccaggaggcagaggtttcagtttgccgagatcgcgccactgcactccagcctgggggacagagcaagactc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       304417 298 +   4111199 TAGTTGAGGTCATAT----------TCTATA-----------------AATAgccgggtgctgtggctcacgcttgtactcttagcactttgggaggccaaggcaggcagatcac--gaggtcaggagtttgagaccagcctcgccaatatggtgaaacctcatctctactaaaaatacgaaaagcagccagtagtggtggtgggtgcctgtagtcccagctacttggcaggctggggcaggagcatcgcttgaacccaggaggcagaggtttcagtgagccgagatcgcgccactgtactccagcctgggggacagagcaagactc
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018511953v1       723617 327 -   3745603 tagttgaggtcatattctgtatacttttgtatcattttcaaaacatttaccggccaggtgccatggctcacgcctgcaatcccagcacttttggaacctgaggcgagtggatcacctgaaaccaggagttcaagatcagcctagccaacatgttgaagccccatctctactgaaaatacaaaaattaaccaggcatggtggtgcatgcttgtaatcccagctacttgggaggctgaggtaggagaattgcttgaacatgggaggcggaggttgtggtgagtcgagatcacaccactgctttccagcctggacaacagagcaagactc
i aotNan1.NW_018511953v1    C 0 N 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6750636   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              21075958   0 -  24206276 I

a score=899286.000000
s hg38.chr15_KI270850v1_alt    244726 304 +    430880 catctaaataaataaaT-----TATGTATacacacacatacacacaccctcatatatatatacacacaTATGTGTGTGTATATacacacacacacacacacacacacacacacacCTACACATGACCGATTGCCTCGCCTCTAGCATTGGGAATCAGTCACCGTGCTGTCCTTGTGGAGTCTTGTGGCCCAACAAGAGGAAGCTCTCCCCTGACATTGCCCCTCCAAAGTGCGCCACTTCCAGTGCGCCCCACTGTCATGCCCGGCCTGTGGACAGCCAGACCCTGCCATCCCTCCCACCCCCGACCAA
s panTro5.chrY               25706517 296 -  26350515 catctaaataaataaat-----tatatatatacacac--acacacaccctcatatatatatatacacatatgtctgtgtatat------agacacacacacacacacacatacacctacacGTGGCCGATTGCCTTGCCTCTAGCACTGGGAATCAGTCACCGTGCTGTCCTTGTGGAGTCTTGTGGCCCAACAAGAGGAAGCTCTCCCCTGACATTGCCCCACCAAAGTGCGCCACTTCCAGTGAGCCTCCCTGTCATGCCCGGCCTGTAGACAGCCAGCCCCCGCCATCTCTCCCACCCCTCACCAA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       343364 298 +    378907 catctaaataaataaat-----tatatatacacacacatacacacaccctcgtatatatatacacatatatgtgtgtgtatat------aGacacacacacacacacacatacacctacacaTGGCCGATTGCCTCGCCTCTAGCACTGGGAATCAGTCACCGTGCTGTCCTTGTGGAGTCTTGTGGCCCAACAAGAGGAAGCTCTCCCCTGACATTGCCCCTCCAAAGTGCGCCACTTCCAGTGAGCCTCCCTGTCATGCCCGGCCTGTGGACAGCCAGCCCCCGCCATCCCTCCCACCCCCCACCAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18845089 295 - 121039945 catctaaataaataaat-----tatatatacacacacatacacacaccctcatatatatatacacatatatgtgtgtgtatat------atacacacacacacacacacatacacctacacaGGGCCGATTGCCTCACCTCTAGCACTGGGAATCAGTCACTGTGCTGTCCTTGTGGAGTCTTGTGGCCCAACAAGAGGAAGCTCTCCCCTGACATTGCCCCTCCAAAGTGCGCCACTTCCAGTGAGCCTCCCTGTCATGCCCAGCCTGTGGACAGCCAGAC---GCCATCCCTCCCACCCCCCACCAA
i nomLeu3.chr6              C 0 M 5913
s rheMac8.chr7               62582350 271 + 169600520 catctaaataaataaaTacacacacacacacacacacgcacacacac--------------------------------acac------acacacacacacacacacaTATACACCTACACGTGGCCGATTGCCTCGCCTCTAGTGCTGGGAATCAGTCACTGTGCTGTCCTTGTGGAGTCTTGTGGCCCAAGAAGAGGAAGCGCTCCCCTGACTTTGTCCCTCCAAAGTGCGCCACCTCTGGTGAGCCTCCCTGTCATGTCTGGCCTGTGGACAGCCAGCCCCTGCCATCCCCCTCACCCCTCACCAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106509604 253 - 171882078 catctaaataaataaat------------------aaaTacacatat--------------------------------atat------acacacacacacacatagatatacacctacacGTGGCCGATTGCCTCGCCTCTAGCGCTGGGAATCAGTCACTGTGCTGTCCTTGTGGAGTCTTGTGGCCCAACAAGAGGAAGCTCTCCCCTGACTTTGTCCCTCCAAAGTGCGCCACCTCTGGTGAGCCTCCCTGTCATGTCTGGCCTGTGGACAGCCAGCCCCCGCCATCCCCCTCACCCCTCACCAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6243573 265 -   6271500 catctaaataaataaaT------acacacacacacacacacacacac--------------------------------acac------acacacacacacacacaGATATACACCTACACGTGGCCGATTGCCTCGCCTCTAGTGCTGGGAATCAGTCACTGTGCTGTCCTTGTGGAGTCTTGTGGCCCAACAAGAGGAAGCTCTCCCCTGACTTTGTCCCTCCAAAGTGCGCCACCTCTGGTGAGCCTCCCTGTCATGTCTGGCCTGTGGACAGCCAGCCCCTGCCATCCCCCTCACCTCTCACCAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5136294 263 +   5160157 catctaaataaataaat--------aaacacacacacacacacacac--------------------------------acac------acaTGCAGACACACATAGATATACACCTACACGTGGCCGATTGCCTCGCCTCTAGTGCTGGGAATCAGTCACTGTGCTGTCCTTGTGGAGTCTTGTGGCCCAACAAGAGGAAGCTCTCCCCTGACTTTGTCCCTCCAAAGTACGCCACCTCTGGTGAGCCTCCCTGTCATGTCTGGCCTGTGGACAGCCAGCCCCTGCCATCCCCCTCACCCCTCACCAA
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1094214 247 +   1458659 catctaaataaataaat------------------------aaaTac--------------------------------acat------atacacacacacacatagatatacacctacacGTGGCCGATTGCCTCGCCTCTAGCGCTGGAAATCAGTCACTCTGCTGTCCTTGTGGAGTCTTGTGGCCCAACAAGAGGAAGCTCTCCCCTGACTTTGTCCCTCCAAAGTGCGCCACCTCTGGTGAGCCTCACTGTCATGTCTGGCCTGTGGACAGCCAGCCCCCGCCATCCCCCTCACCCCTCACCAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       304715 248 +   4111199 catctaaataaataaat----------------------aaaTacac--------------------------------atac------acacacacacacacatagatatacacctacacaTGGCTGATCGCCTCGCCTCTAGCGCTGGGAATCAGTCACCGTGCTGTCCTTCTGGAGTCTTGTGGCCCAACAAGAGGAAGCTCTCCCCTGACTTTGTCCCTCCAAAGTGTGCCACCTCCGATGAGCCTCCCTATCATGTTTAGCCTGTGGACAGCCAGCCACCGCCATCCCCCTCACTCGCC-CCAA
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6750636   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              21075958   0 -  24206276 I

a score=786579.000000
s hg38.chr15_KI270850v1_alt    245030 258 +    430880 GCATGGGGGTGCTCTGTAGGTAGCTGTGTGGCCTGACAGTCTCTACCAGTCCTGCTGTCCCTCAGCTGAGAATCAAACCCATTTCTGGATGACAGGGAATGTGTCTTCTGCTGGCTGTGTTCTCTGTGGAGCTCAGGGGAGGGAAAAGGCCAAGCTATTTCTAGGGTGCTGTCAGGACCGATGAAAAGGTCACACCCTTTCCAAGAGACACTTTTCCTGGAAAGCCCCTGGAGCTTAGCTGGCTCTTATCCTGTGATA
s panTro5.chrY               25706813 258 -  26350515 GCATGGGGGTGCTGTGTAGGCAGCTGTGTGGCCTGACAGTCTCTACCAGTCCTGCTGTCCCTTGGCTGAGAATCAAACCCATTTCTGGATGACAGGGAATGTGTCCTCTGCTGGCTGTGTTCTCTGTGGAGCTCAGGGGAGGGAGAAGACCAAGCCATTTCTAGGGTGCTGTCAGGACCGATGAAAAGGTCACACCCTTTCCAAGAGACACTTTTCCTGGAAAGCCTCTGGAGCTTAGCTGGCTCTTATCCTGTGATA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       343662 258 +    378907 GTATGGGGGTGCTGTGTAGGCAGCTGTGTGGCCTGACAGTCTCTACCAGTCCTGCTGTCCCTCGGCTGAGAATCAAACCCATTTCTGGATGACAGGGAATGTGTCCTCTGCTGGCTGTGTTCTCTGTGGAGCTCAGGGGAGGGAAAAGACCAAGCCATTTCTAGGGTGCTGTCAGGACCGATGAAAAGGTCACACCCTTTCCAAGAGACACTTTTCCTGGAAAGCCCCTGGAGCTTAGCTGGCTCTTGTCCTGTGATA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62582621 255 + 169600520 GCATGGGGGTGCTGTGCAGGCAGCCGTGTGGCCTGACAGTCTCTACCAGTCCTGCTGTCCCTTGATTGAGAATCAGATCCATTTCTGGATGACAGATAATGTGTCCTCTGCTGGCTGTGTTCTCTGTGGAACTT--GGGAGGGGAAAGGCCAAACCATTTCTAGGGTGCTGTTGGGAGCGGTGAAAAGGTCACACCTTTTGCAAGGGATACTTTTCTTGGAAAG-CCCTGGAGCTTAGCTGGCTCTTATCCTGTGATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106509857 255 - 171882078 GCATGGGGGTGCTGTGCAGGCAGCCGTGTGGCCTGACAGTCTCTACCAGTCCTGCTGTCCCTTGATTGAGAATCAGATCCATTTCTGGATGACAGATAATGTGTCCTCTGCTGGCTGTGTTCTCTGTGGAACTC--GGGAGGGGAAAGGCCAAACCATTTCTAGGGTGCTGTTGGGAGCGGTGAAAAGGTCACACCCTTTCCAAGTGACACTTTTCCTGGAAAG-CCCTGGAGCTTAGCTGGCTCTTATCCTGTGATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6243838 255 -   6271500 GCATGGGGGTGCTGTGCAGGCAGCCGTGTGGCCTGACAGTCTCTACCAGTCCTGCTGTCCCTTGATTGAGAATCAGATCCGTTTCTGGATGACAGATAATGTGTCCTCTGCTGGCTGTGTTCTCTGTGGAACTC--GGGAGGGGAAAGGCCAAACCATTTCTAGGGTGCTGTTGGGAGCGGTGAAAAGGTCACACCTTTTGCAAGGGATACTTTTCTTGGAAAG-CCCTGGAGCTTAGCTGGCTCTTATCCTGTGATA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5136557 255 +   5160157 GCATGGGGGTGCTGTGCAGGCAGCCGTGTGGCCTGACAGTGTCTACCAGTCCTGCTGTCCCTTGATTGAGAATCAGACCCATTTCTGGATGACAGATAATGTGTCCTCTGCTGGCTGTGTTCTCTGTGAAACTT--GGGAGGGGAAAGGCCAAACCATTTCTAGGGTGCTGTTGGGAGTGGTGAAAAGGTCACACCCTTTCCAAGTGACACTTTTCCTGGAAAG-CCCTGGAGCTTAGCTGGCTCTTATCCTGTGATA
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1094461 255 +   1458659 GCATGGGGGTGCTGTGCAGGCAGCCGTATGGCCTGACAGTCTCTACCAGTCCTGCGGTCCCTTGATTGAGAATCAGACCCATTTCTGGATGACAGATAATGTGTCCTCTGCTGGCTGTGTTCTCTGTGGAACAC--GGGAGGGGAAAGGCCAAACCATTTCTAGGGTGCTGTTGGGAGCGGTGAAAAGGTCACACCCTTTCCAAGTGACACTTTTCCTGGAAAG-CCCTGGAGCTTAGCTGGCTCTTATCCTGTGATA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       304963 256 +   4111199 GCATGGGGGTGCTGTGCAGGCAGCCGTGTGGCCTGACAGTCTCTACCAGTCCTGCTGTCCCTTGATTGAGAATCAGACCCATTTCTGGATGACAGATAATGTGTCCTCTGCTGGCTGTGTTCTCTGTGGAACTT--GGGAGGGGAAAGGCCAAACCATTTCTAGGGTGCTGTTGGGAGCGGTGAAAAGGTCACACCCTTTCCAAGGGACGCTTTTCCTGGAAAGCCCCTGGAGCTTAGCTGGCTCTTATCCTGTGATA
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10             113857898 2596 - 132174527 I
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6750636   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              21075958   0 -  24206276 I
e nomLeu3.chr6               18845384 5913 - 121039945 M

a score=14898.000000
s hg38.chr15_KI270850v1_alt    245288 2 +    430880 AG
s panTro5.chrY               25707071 2 -  26350515 AG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       343920 2 +    378907 AG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62582876 2 + 169600520 AG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106510112 2 - 171882078 AG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6244093 2 -   6271500 AG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5136812 2 +   5160157 AG
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1094716 2 +   1458659 AG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       305219 2 +   4111199 AG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114223356 2 - 132174527 AG
i calJac3.chr10             n 2596 C 0
s saiBol1.JH378276            2880016 2 +   3282555 AG
i saiBol1.JH378276          N 0 C 0
s cebCap1.NW_016107979v1       832472 2 +   1024465 AG
i cebCap1.NW_016107979v1    N 0 C 0
s aotNan1.NW_018511953v1      2752304 2 -   3745603 AG
i aotNan1.NW_018511953v1    N 0 C 0
e dasNov3.JH564958             189069 22252 +    584178 T
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6750636 0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              21075958 0 -  24206276 I
e nomLeu3.chr6               18845384 5913 - 121039945 M

a score=9100.000000
s hg38.chr15_KI270850v1_alt    245290 1 +    430880 C
s panTro5.chrY               25707073 1 -  26350515 C
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       343922 1 +    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62582878 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106510114 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6244095 1 -   6271500 C
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5136814 1 +   5160157 C
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1094718 1 +   1458659 C
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       305221 1 +   4111199 C
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114223358 1 - 132174527 C
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2880018 1 +   3282555 C
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       832474 1 +   1024465 C
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2752306 1 -   3745603 C
i aotNan1.NW_018511953v1    C 0 C 0
s dasNov3.JH572216             197413 1 -   1040364 C
i dasNov3.JH572216          n 22252 C 0
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6750636 0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              21075958 0 -  24206276 I
e nomLeu3.chr6               18845384 5913 - 121039945 M

a score=10500.000000
s hg38.chr15_KI270850v1_alt    245291 1 +    430880 C
s panTro5.chrY               25707074 1 -  26350515 C
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       343923 1 +    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62582879 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106510115 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6244096 1 -   6271500 C
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5136815 1 +   5160157 C
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7705641 1 +  58131712 C
i chlSab2.chr26             n 0 C 0
s manLeu1.NW_012105520v1      1094719 1 +   1458659 C
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       305222 1 +   4111199 C
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114223359 1 - 132174527 C
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2880019 1 +   3282555 C
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       832475 1 +   1024465 C
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2752307 1 -   3745603 C
i aotNan1.NW_018511953v1    C 0 C 0
s dasNov3.JH572216             197414 1 -   1040364 C
i dasNov3.JH572216          C 0 C 0
e canFam3.chr9               55255633 21040 +  61074082 T
e otoGar3.GL873530            6750636 0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18845384 5913 - 121039945 M

a score=69413.000000
s hg38.chr15_KI270850v1_alt    245292 8 +    430880 AGAGGCTC
s panTro5.chrY               25707075 8 -  26350515 AGAGGCTC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       343924 8 +    378907 AGAGGCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62582880 8 + 169600520 AGAGGCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106510116 8 - 171882078 AGAGGCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6244097 8 -   6271500 AGAGGCTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5136816 8 +   5160157 AGAGGCTC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7705642 8 +  58131712 AGAGGCTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1094720 8 +   1458659 AGAGGCTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       305223 8 +   4111199 AGAGGCTC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114223360 8 - 132174527 AGATACTC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2880020 8 +   3282555 AGATGCTC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       832476 8 +   1024465 AGATGCTC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2752308 8 -   3745603 AGATGCTC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8723375 8 -  36342412 AGAGCATC
i otoGar3.GL873530          n 0 C 0
s dasNov3.JH572216             197415 8 -   1040364 AGAGCCCC
i dasNov3.JH572216          C 0 C 0
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18845384 5913 - 121039945 M

a score=184553.000000
s hg38.chr15_KI270850v1_alt    245300 21 +    430880 TGGGGGGTGAGGGAGCAGAAA
s panTro5.chrY               25707083 21 -  26350515 TGCAGGGTGAGGGAGCAGAAA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       343932 21 +    378907 TTCGGGGTGAGGGAGCAGAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62582888 21 + 169600520 TAGGGGGTGAGGGAGCAGAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106510124 21 - 171882078 TAGGGGGTGAGGGAGCAGAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6244105 21 -   6271500 TAGGGGGTGAGGGAGCAGAAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5136824 21 +   5160157 TAGGGGGTGAGGGAGCAGAAA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7705650 21 +  58131712 TACGGAGTGAGGGAGGAGAAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1094728 21 +   1458659 TAGGGGGTGAGGGAGCAGAAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       305231 21 +   4111199 TAGTGGGTGAGGGAGCAGAAA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114223368 21 - 132174527 TCGGAGGTGAGGGAGCAGAAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2880028 21 +   3282555 TCGGAGGTGAGGGAGCAGAAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       832484 21 +   1024465 TCGGAGGTGAGGGAGCAGACA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2752316 21 -   3745603 TCGGAGGTGAGGGAGCAGAAA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8723383 21 -  36342412 AGGAGGGTAAAGGGACAGAGC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56881343 21 + 124595110 TAAGGGGCATGGGAACAGAAA
i mm10.chr9                 N 0 C 0
s dasNov3.JH572216             197423 21 -   1040364 CAGGGCATGAGGGGGTAGAAC
i dasNov3.JH572216          C 0 C 0
e canFam3.chr9               55255633 21040 +  61074082 T
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18845384 5913 - 121039945 M

a score=1612790.000000
s hg38.chr15_KI270850v1_alt    245321 181 +    430880 --CCCTCCTC--ACCCCAGCCAAC-GGGGACCTGTATACCTCTGC--CAG-TCTCTCACTTGGCCTTGCTGCTGTCCTCTGAGACTGCCTGTTCCTCCCTC--TCTGTGA--CTCTACACCACCATCACCTCCTCCAGGAAGTCCTCT-G-G-ATTGACTCCTAGCTTATTACCTCTTTATTGTGCAGACCCTCTC
s panTro5.chrY               25707104 180 -  26350515 --CCCTCTTC--ACCCCACCCAAC-GGGGACCTGT-TACCTCTGC--CAG-TCTCTCACTTGGCCTTGCTGCTGTCCTCTGAGACTGCCTATTCCTCCCTC--TCTGTGA--CTCTACACCACCATCACCTCCTCCAGGAAGTCCTCT-G-G-ATTGACTCCTAGCTTATTACATCTTTATTGTGCAGACCCTCTC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       343953 181 +    378907 --CCCTCTTC--ACCCCACCCAAC-GGGGACCTGTATATCTCTGC--CAG-TCTCTCACTTGGCCTTGCTGCTGTCCTCTGAGACTGCCTATTCCTCCCTC--TCCGTGA--CTCTACACCACCATCACCTCCTCCAGGAAGTCCTCT-G-G-ATTGACTCCTAGCTTACTACATCTTTATTGTGCAGACCCTCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62582909 181 + 169600520 --CCCTCCTC--ACCCCACCCAGT-GGGGTCCTGTACACCTCTGC--CAG-TCTCTCACTTGGACTTGCTGCTGTCCTCTGAGACTGCCTATTCCTCCCTC--TCTGTGA--CTCTACACCACCATCACCTCCTCCAGGAAGTCTTCT-G-G-ATTGACTCCTAGGTTATTAAATCTTTATCCTGCAGACCCTCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106510145 181 - 171882078 --CCCTCCTC--ACCCCACCCAGT-GGGGTCCTGTACACCTCTGC--CAG-TCTCTCACTTGGACTTGCTGCTGTCCTCTGAGACTGCCTATTCCTCCCTC--TCTGTGA--CTCTACACCACCATCACCTCCTCCAGGAAGTCTTCT-G-G-ATTGACTCCTAGCTTATTAAATCTTTATCCTGCAGACCCTCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6244126 181 -   6271500 --CCCTCCTC--ACCCCACCCAGT-GGGGTCCTGTACACCTCTGC--CAG-TCTCTCACTTGGACTTGCTGCTGTCCTCTGAGACTGCCTATTCCTCCCTC--TCTGTGA--CTCTACACCACCATCACCTCCTCCAGGAAGTCTTCT-G-G-ATTGACTCCTAGCTTATTAAATCTTTATCCTGCAGACCCTCTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5136845 181 +   5160157 --CCCTCCTC--ACCCCACCCAGT-GGGGTCCTGTATACCTCTGC--CAG-TCTCTCACTTGGACTTGCTGCTGTCCTCTGAGACTGCCTATTCCTCCCTC--TCTGTGA--CTCTACACCACCATCACCTCCTCCAGGAAGTCTTCT-G-G-ATTGACTCCTAGCTTATTAAATCTTTATCCTGCAGACCCTCTC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7705671 180 +  58131712 --CCCTCCTT--GCCCC-CACAAG-GGGGACCTGTGTACCCCTGC--CAG-TCTCTCACTTGGCCTTGCTGCTGTCCTCAGAGACTGCTGCTTCCTCCCTC--TCTGTGA--CTGTACACCACCGTCACCTCCTCCAGGAAGTCTTCT-G-G-ATTGACTTCTAGCTTATTACGTCTTTATCCGGCACATCATCTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1094749 181 +   1458659 --CCCTCCTC--ACCCCACCCAGT-GGGGTCCTGTATACCTCTGC--CAG-TCTCTCACTTGGACTTGCTGCTGTCCTCTGAGACTGCCTATTCCTCCCTC--TCTGTGA--CTCTACACCACCATCACCTCCTCCAGGAAGTCTTCT-G-G-ATTGACTCCTAGCTTATTAAATATTTATCCTGCACACCCTCTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       305252 167 +   4111199 --CCCTCCTC--AC-------------GGTCCTGTATACCTCTGC--CAG-TCTCTCACTTGGACTTGCTGCTGTCCTCTGAGACTGCCTATTCCTCCCTC--TC--TGA--CTCTACACCACCATCACCTCCTCCAGGAAGTCTTCT-G-G-ATTGACTCCTAGCTTATTAAATCTTTATCCTGCAGACCCTCTC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114223389 181 - 132174527 --CCCTCCTT--GCCCCACCCAAG-GGGGACCTGTGTACCCCTGC--TAG-TCTCTCACTCGGCCTTGCTGCTGTCCTCTGAGACTGCCTATTCCTCCCTC--TCTGTGA--TGCTACAGCACTGTCACCTCCTCCAGGAAGTCCTCT-G-G-ATTGACTCCTAAGTTATCACATCTTTATCCCACACACCCTCTC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2880049 180 +   3282555 --CCCTCCTT--GCCCCACCCAAG-GGGGACCTGT-TACCTCTGC--TAG-TCTCTCACTTGGCCTTGCTGCTGTCCTCTGAGACTGCCTATTCCTCCCTC--TTTGTGA--TGCTACGCCACTGTCACCTCCTCCAGGAAGTCCTCT-G-G-ATTGACTCCTAACTTATCACATCTTTATCCTGCACACCCTCTC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       832505 178 +   1024465 --CCCTCCTT--GCCCCACCCAAG-AGGGACCTGC-TACCCCTGC--TAG-TCTCTCACTTGGTCTTGCTGCTGTCCTCTGAGACTGCCTATTCCTCCCTC--TCTGTGA--TGCTACACCACTGTCACCGCCTCCAGGAAGTCCTCT-G-A-ATTGACTCCTAAC--ATCACATCTTTATCCTGCACACCCTCTC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2752337 180 -   3745603 --CCCTCCTT--GCCCCACCCAAG-GGGGACCTGT-TACCCCTGC--TAG-TCTCTCACTTGGCCTTGCTGCGGTCCTCTGAGACTGCCTATTCCTCCCTC--TCTGTGA--TGCTACACCACTGTCACCTCCTCCAGGAAGTCCTCT-G-G-ATTGACTCCTAACTTATCATATCTTTATCCTGCACACCCTCTC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8723404 170 -  36342412 --CCTCCTCT--GTCTCACCCAAG-GGGAACCTGTGTATCCCTGC--TAG-TCTCTTACTTGGCCTTGCAG-----CCCTGAGACT-CCTATTCCCCTCCC--TCTCTG---CTTTATACCAGTCTCACCTCCTCCAAGAAGTCCTCCAG-G-ATTGACTCTTATCTCATTA----TTTATCCTACAC-CCCTCTC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56881364 151 + 124595110 --CCTCCATT--GC----------------------TA-----GC--CGA-CCTTCCACCGATCCTT-------CTCCCTGAGATCATTTATTCCTCTTCC--TCTGTGATGCTTTATGCCGCCCTCACCTCCTCCAGGATGTCCTCCGG-G-ATTGACTTCTGGCTTGTTATTTCTTCATCCTGCACCCTCTTTA
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1730896 170 -  40214260 --CCCTCCTCTGGCTCCAGCTGTTCCAGAGCCCGCACATCTCTGCTTCAG-TCTGTCACTTGGCCTTGCTGC---CCTTTGAAACCCCCGCCTGCTC---------------CTCTCTCCCAGCGTCACCTCCCCAAGGAAGCCCTCT-G-GAACTGACTCCTAGC---TCACGGCTTCGTCCTGCCCTGCCTCCC
i canFam3.chr30             n 21040 C 0
s dasNov3.JH572216             197444 177 -   1040364 TGCCCTGTTG----CCCACGCAGG-GGAGACCTGTGAACCCCTGC--CAGTTCTCTCACTCGGCCTTGCTGCTCTCCACTGAGAATGCCCATTCCCTTCCCAGTCTGCTC--CTCTATTCCAACCTCACCTCCCCCTAGAAGCCCTCT-GCG-ATTGACTCCTGGCTCATTCCTGCTTCCTCCTGTAC--------
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18845384 5913 - 121039945 M

a score=4117097.000000
s hg38.chr15_KI270850v1_alt    245502 372 +    430880 CATTCAAAGCCCCTCTTCAACTG-CCCCC------CCCCC-CCACTACCTCCAAGACAGAGATTCTGGGTTCTTGCAACTGCAGCCCCTCAGAGAGTGTAAGAGGGGCAGAAA-A-AGGAGATCAGGAG----GTGAGGGAAGCAGCGCTGTCAGAGTTTCCAAAGCCCCGGCCAGCAAGGCCTCAGAGGCCTCTGTTGGAGTG-GGGGCCTCCCTGG-CTAT-GCGC-T-CCAGCTGCACAAGGCAGCCTCTGTGAGCCTCTCCC-ACTCAGCCCTACAGGAAGCAGCAGGGCCCAG--CCTCAATGGACCCATTCAGACCCCAGCGCTCCGGAAAGTACCTCTGCTTCCTGCCACCATTCCACTCT--------------GGCCAAACAGGCT-CTACTCTCTTCTG
s panTro5.chrY               25707284 378 -  26350515 CATTCAAAGCCCCTCTTCAACTG-CCCCCCACCCTCCGCC-CCACCACCTCCAAGACAGAGATTCTGGGTTCCTGCAACTGCAGCCCCTCAGAGAGTGTATGAGGGGCAGAAA-A-AGGAGATCAGGAA----ATGAGGGAAGCAGTGCTGTCAGAGTTTCCAAAGCCCTGGCCAGCAAGGCCTCAGAGGCCTCTGTTGGGGTG-GGGGCCTCCCTGG-CTAT-GCGC-T-CCAGCAGCAAAAGGCAGCCTCTGTGAGCTTCTCCC-GCTCAGCCCTACAGGAAGCAGGAGGGCCTAG--CCTCAATGGACTGATTCAGACCCCAGCGCTCCAGAAAGTACCTCTGCTTCCTGCCACCATTCCACTCT--------------GGCCAAACAGCCT-CTACTCTCTTCTG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       344134 379 +    378907 CATTCAAAGCCCCTCTTCAACTG-CCCCCCCCCCCCCGCCACCACCACCTCCAAGACAGAGATTCTGGGTTCTTGCAACTGCAGCCCCTCAGAGAGTGTAAGAGGGGCAGAAA-A-AGGAGATCAGGAG----GTGAGGGAAGCAGCGCTGTCAGAGTTTCCAAAGCCCTGGCCAGCAAGGCCTCAGAGGCCTCTGTTGGAGTG-GGAGCCTCTCTGG-CTAT-GCAC-T-CCAGCAGCACAAGGCAGCCTCTGTGAGCTTCTCCC-GCTCAGCCCTACAGGAAGCAGGAGGGCCCAG--CCTCAATGGACTGATTCAGACCCCTGCGCTCCGGAAAGTACCTCTGCTTCCTGCCACCATTCCACTCT--------------GGCCAAACAGCCT-CTACTCTGTTCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18851304 377 - 121039945 CATTAAAAGCCCCTCTTCAACTG-CCGCC---CCCCCCCC-CCACCACCTCCAAGACAGATATTCTGGGTTCTTGCAACTGCAGCCCCTCAGAGAGTGTAAGAGGGGCAGAAA-A-AGGAGATAAGGAGGT--GTGGGGGAAGCAGCGCTGTCAGAGTTTCCAAAGCCCTGGCCAGCCAGGCCTCAGAGGCCTCTGTTGGGGTG-GGGGCCTCCCTGG-CTAT-GCGC-T-TCAGCAGCACAAGGCAGCCTCTATGAGCTTCTCCT-GCTCAGCCCTACAGGAAGCAGCAGGGCCCAG--CCTCAATGGACCCATTCAGACCCCAGCGCTCCGGAAAGTACCTCTGCTTCCTGCCACCATTCCACTCT--------------GGCCAAACAGGCT-CTACTGTCTTctg
i nomLeu3.chr6              M 5913 I 10347
s rheMac8.chr7               62583090 370 + 169600520 CATTCAAAGCCCCTCTTCAACTG-CCCCC------GCCCC-TCACCACCTCCAAGACAGAGATTCTGGGTTCTTGCAACTGCAGCCCCTCAGAGAGTGTAAGAGGGGCAGACA-A-AGGAGATCAGAAG----GTGGGGGAAGCGGCGCTGTC--AGTTTCCAAAGCCCTGGCCAGCAAGGCCTCAGAGGCCTC--TTGGTGTG-GGGTCCTGACTGG-CTAT-GCAA-T-CCAGCAGCACAAGGCAGCCTCTGTGAGCCCCTCCC-GCTCAGCCCCACAGGAAGCAGCAGGGCCCAGCCCCTCAGTGGACCCATTCAGACCCCAGCGCTCTGGAAAGTACCTCTGTTTCTTGCCACCGTTCCACTCT--------------GGCCAAACAGGCT-CTTCTCTCTTCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106510326 372 - 171882078 CATTCAAAGCCCCTCTTCAACTG-CCCCC------GCCCC-TCACCACCTCCAAGACACAGATTCTGGGTTCTTGCAACTGCAGCCCCTCAGAGAGTGTAAGAGGGGCAGACA-A-AGGAGATCAGAAG----GTGGGGGAAGCGGCGCTGTCAGAGTTTCCAAAGCCCTGGCCAGCAAGGCCTCAGAGGCCTCTGTTGGGGTG-GGGTCCTGACTGG-CTAT-GCAA-T-CCAGCAGCACAAGGCAGCCTC--TGAGCCCCTCCC-GCTCAGCCCCACAGGAAGCAGCAGGGCCCAGCCCCTCAGTGGACCCATTCAGACCTCAGCGCTCTGGAAAGTACCTCTGTTTCTTGCCACCGTTCCACTCT--------------GGCCAAACAGGCT-CTTCTCTCTTCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6244307 370 -   6271500 CATTCAAAGCCCCTCTTCAACTG-CCCCC------GCCCC-TCACCACCTCCAAGACAGAGATTCTGGATTCTTGCAACTGCAGCCCCTCAGAGAGTGTAAGAGGGGCAGACA-A-AGGAGATCAGAAG----GTGGGGGAAGCGGCGCTGTC--AGTTTCCAAAGCCCTGGCCAGCAAGGCCTCAGAGGCCTC--TTGGTGTG-GGGTCCTGACTGG-CTAT-GCAA-T-CCAGCAGCACAAGGCAGCCTCTGTGAGCCCCTCCT-GCTCAGCCCCACAGGAAGCAGCAGGGCCCAGCCCCTCAGTGGACCCATTCAGACCCCAGCGCTCTGGAAAGTACCTCTGTTTCTTGCCACCGTTCCACTCT--------------GGCCAAACAGGCT-CTTCTCTCTTCTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5137026 373 +   5160157 CATTCAAAGCCCCTCTTCAACTG-CCCCC------GCCCC-TCACCACCTCCAAGACAGAGATTCTGGGTTCTTGCAACTGCAGCCCCTCAGAGAGTATAAGAGGGGCAGACA-A-AGGAGATCAGAAG----GT-GGGGAAGCGGCGCTGTCAGAGTTTCCAAAGCCCTGGACAGCAAGGCCTCAGAGGCCTCTGTTGGGGTG-GGGTCCTGACTGG-CTAT-GCAA-T-CCAGCAGCACAAGGCAGCCTCTGTGAGCCCCTCCC-GCTCAGCCCCACAGGAAGCAGCAGGGCCCAGCCCCTCAGTGGACCCATTCAGACCCCAGCGCTCTGGAAAGTACCTCTGTTTCTTGCCACCGTTCCACTCT--------------GGCCAAACAGGCT-CTTCTCTCTTCTG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7705851 376 +  58131712 CATTCAAAGCCCCTCTTCAAATGCCCCCC------ATCCC-CCACCACCTCCAAGACAGGGATTCTGGGTTTTTGCAACTGCAGCCCCTCAGAGAGTGTAAAAGGGGCAGAAA-AATGGAGACTGGGAG----GTGGGTGAAGTGGTGCTGTCTGAGTTTCCAAAGCCGTGGCCAGCAAGGCCTCAGAGGCCTCTGTTGGGATG-GGGGGCTGCCTGG-CTAT-GCGC-T-CCAGCAGCACAAGACAGCCTGTGTGAGCCCCTTCC-ACTCAGCCCCACAGGAAGTAGGAGGGTCCAGCCCCTCAATGGACCCATTCAGACCCCAGCACTCTGGAAAGTACCTCTGCTTCCTGCCACCCTCCCACTCT--------------AGCCAAACAGGCT-CTACTGTCTTCTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1094930 370 +   1458659 CATTCAAAGCCCCTCTTCAACTG-CCCCC------GCCCC-TCACCACCTCCACGACAGAGATTCTGGGTTCTTGCAACTGCAGCCCCTCAGAGAGTGTAAGAGGGGCAGACA-A----AGATCAGAAG----GTGGGGGAAGCGGCGCTGTCAGAGTTTCCAAAGCCCTGGCCAGCAAGGCCTCAGAGGCCTCTGTTGGTGTG-GGGTCCTGACTGG-CTAT-GCAA-T-CCAGCAGCACAAGGCAGCCTCTGTGAGCCCCTGCC-GCTCAGCCCCACAGGAAGCAGCAGGGCCCAGCCCCTCAGTGGACCCATTCAGACCCCAGC-CTCTGGAAAGTACCTCTGTTTCTTGCCACCGTTCCACTCT--------------GGCCAAACAGGCT-CTTCTCTCTTCTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       305419 374 +   4111199 CATTCAAAGCCCCTCTTCAACTG-CCCCC------GCCCC-TCACCACCTCCAAGACAGAGATTCTGGGTTCTTGCAACTGCAGCCCCTCAGAGGGTGTAAGAGGGGCAGAAA-A-AGGAGATCAGAAG----GTGGGGGAAGCGGCGCTGTCAGAGTTTCCAAAGTCCTGGCCAGCAAGGCCTCAGAGGCCTCTGTTGGGGTG-GGGTCCTGACGGG-CTAT-GCAA-T-CCAGCAGCACAAAGCAGCCTCTGTGAGCCCCTCCC-GCTCAGCCCCACGGGAAGCAGCAGGGCCCAGCCCCTCAGTGGACCCATTCAGACCCCAGCGCTCTGGAAAGTACCTCTGTTTCTTGCCACCGTTCCACTCT--------------GGCCAAACAGGCT-CTTCTCTCTTCTG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114223570 363 - 132174527 CATATGAAGCCCCTCTTCAACTG-CCCCC-------------CACCACCTCCAAG----GGATTCTGGGTTCTTGCAACTGCAGTCCCTCAGAGACAGTAAGAAGGGCAGAAA-A-AGGAGACCAGGAA----A-GAGGGGAGTAGCACTGTCAGAGTTTCCAAAGCTCTGGCCAGCAAGGCCTCAGAGGCCTCTGTTGGGATG-GGGGGCTGCCTGG-CTAT-GCAC-T-CCAGCAGCACAAGGCAGCCTGTGTGAGCCCCTCCC-GCTCAGCCCCACAGGAAGCAGCAGGGCCCAGCCCCTCAATGGACCCATTCAGACGCCAGCACTGTGGAGAGTACCTCTGCTTCCTGCCACCCTCCCACTCT--------------GACCAAACAGGCT-CTACTCTCTCCCG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2880229 366 +   3282555 CATGTGAAGCCTCTCTTCAACTG-CCCCC-------------CGCGACCTCCAAG----GGATTCTGGGTTCTTGCAACTGCAGTCCCTCAGAGACAGTAAGAGGGGCAGAAA-A-AGGAGACCAGGAAGTGGG-GTGGGGAGTGGCACTGTCAGAGTTTCCAAAGCTCTGGCCAGCAAAGCCTCAGAGGCCTCTGTTGGGAT--GGGGGCTGCCTGG-CTAT-GCAC-T-CCAGCAGCACAAGGCAGCCTGTGTGAGCCCCTCCC-GCTCAGCCCCACAGGAAGCAGCAGGGCCCAGCCCCTCAATGGACCCATTCAGACCCCCGCACTCTGGAGAGTACCTCTGCTTCCTGCCACCCTCCCACTCT--------------GGCCAAACAGGCT-CTACTCTCTCCTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       832683 363 +   1024465 CATATGAAGCCCCTCTTCAACTG-CCCCC-------------CACCACCTCCAAG----GGATTCTGGGTTCTTGCAACTGCACTCCCTCAGAGGCAGTAAGAGGGGCAGAAA-A-AGGAGACGAGGAA----G-GGGGAGAGTAGCACTGTCAGAGTTTCCAAAGCTCTGGCCAGCAAAGCCTCAGAGGCCTCTGTTGGGATG-GGGGGCTGCCTGG-CTAT-GCAC-T-CCAGCAGCACAAGGCAGCCTGTGTGAGCCCCTCCC-GCTCAGCCCCACAGGAAGCAGCAGGGCCCAGCCCCTCAATGGACCCATTCAGACCCCAGCACTCTGGAGAGTACCTCTGCTTCCTGCCACCCTCCCACTCT--------------GACCAAGCAGGCT-CTACTCTCTCCCG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2752517 363 -   3745603 CATATGAAGCCCCTCTTCAACTG-CCCCA-------------CACCACCTCCAAG----GGATTCTGGGTTCTTGCAACTGCAGTCCCTCAGAGACAGTAAGAGGGGCAGAAA-A-AGGAGACCAGGAA----G-AGGGGGAGTAGCACTGTCAGAGTTTCCAAAGCTCTGGCCAGCAAGGCCTCAGAGGCCTCTGTTGGGATG-GGGGGCTGCCTGG-CTAT-GCAC-T-CCAGCAGCACAAGGCAGCCTGTGTGAGCCCCTCCC-GCTCAGCCCCACAGGAAGCAGCAGGGCCCAGCCCCTCAATGGACCCATTCAGACCCCAGGACTCTGGAGAGTACCTCTGCTTCCTGCCACCCTCCCACTCT--------------GGCCAAACAGGCT-CTACTCTCTCCTG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8723574 367 -  36342412 CATTTGAAACCCCTCTCCAATTG-CTTCC------------CCA-AACTTCTAGGACAGAGATTCTAGGTTCTTGCAACTACAGCCCATCAAAGAGAGTAA-AGGGGGAGAAA-A-AGGAGATCAGGAG----AT---TCAGTTGGTGCTCTCAGAGTTTCCAAAGCCCTGGCCAGCAAAGCTTCAGAGGCCTGAGTTGGGGTGAGGGGGCTGCCTGG-CCCTCACAC-T-GCAGCAGCACAAGGCAGCCTGTGTGAGCGGTCTCT-GCTCAACCCCACAGGAAGCAGCAGGGCCCAGCCCCTCAATGGGCCCATTCAGACCCCAGCTCTCTGGAAAGTACCTCTACTTCCTGCCACCCTCCCATTCT--------------GGCCAAACAGGCTGCTGCTCTCTCCTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56881515 340 + 124595110 TATTTGAAGGTCCTCTCCAACTG-CCCCC----------------TACCTA-ATGACAGCAATTCTG----------AATGCATCCTGTCAGA-AGGGTGAGTGGAGCACAAGTA-TGGAGGT---GAG----GTGGGG------GTACTGTCAGAGTTTCCAAAGCCCCAGCCAGCTTGGCTTCAGAGGCCTCTGTTCTGACAAGGGGGCTGCCTGGCCTGC-ACAC-T-CCAACAACACAAGGCAGCCAGTGTGAGTGCCTCT--------CCACACAGGAAACAGCAGGGCCCAGTCCCTCAAAGGGCTCATTCAGACCCCAGCTCTCTGGAAAGTACCTCTGCTTCCTGCCACCCTCCCACT-T--------------AGTCAAACAGGCTGCTGCTCTCTCCTG
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1731066 373 -  40214260 CACTCACAGCTCGTCTCCAGCTG-TCTCC----------------------CAGGACCGGGGTTCTGGGTCCTTGCAGCTGCGGCCCATCAGAGACGGC--GAGGGGCAGCAG-C-AGGAGACCGGGAC----GTGGGGGGAACGGCGCTGTCAGAGTTTCCAGAACCCTGGCCAGCGAGGCCTCAGAGGCCTCTGTTAGGACGAGGGGGCCGCCTGGCCTGT-GCACTT-CCAGCCGCACAAGGCGGCTTGTGTGAGCGCGTCCCTGCCCAGGCCCACAGGAAACGGCAGGGCCCAGCCCCTCAATAGGCTCATTCAGACCCCAGCTCTCTGGAAAGTACCTCTACTTCCTGCCACCCTCCCACTCC-GCCTGGAGGACAAGGCTAAACAGGC--CGGCCCTCTCCTC
i canFam3.chr30             C 0 I 2
s dasNov3.JH572216             197621 363 -   1040364 ---------CTCCTCCCCAACTT-TCCTC-------------------CCCCCAAACAGGACTTCTGGGTTCTTGTAACTACAACCCCTCAGAGAC----AAGCGAGAATCAG-A-AGGAGA-CAGGAG----GT-AGGGGAGTGGCACTGTCAGCGTTTCCAAAGCCGGGGCTAGGAGAGCCTCCCAGACCTCTGCTGGGGTGAGGGGGCTGCCCGG-CCCG-CCGC-TCCCGGCCGCACAAGGCAGCCTGTGTGCGCCCCTCCC-GCCCAGCCCCACAGGAAGCAGCA-GGCCCAGCCCCTCAATGGGCCCATTCAGACCCCAGCTCTCTGGAAAGTACCTCTGCTTCCTGCCACCCTCCCACTCCGGCCTCGTGAACCAGGCCAAACAGATTGCTACTCTCCCTCC
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I

a score=913779.000000
s hg38.chr15_KI270850v1_alt    245874 94 +    430880 -ATGGGAGGAGGCCGCAGGCAGGTGGTTCAGTGGTTAGGGCCAACCATCTACTTCAGTTCCTGTCTGGCCCAGATCTCTGACCT----TGACCATGCCC
s panTro5.chrY               25707662 94 -  26350515 -CTGGGAGGGGGCCGCAGGCAGGTGGTTCAGTGGTTAGGGCCAACCATCTACTTCAGTTCCTGTCTGGCCCAGATCCCTGATGT----TGACCATGCCT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       344513 94 +    378907 -CTGGGAGGGGGCCGCAGGCAGGTGGTTCAGTGGTTAGGGCCAACCATCTACTTCAGTTCCTGTCTGGCCCAGATCCCTGATGT----TGACCATGCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62583460 94 + 169600520 -CTGGGAGGGGGCTGCAGACAGATGGTTCAGTGGTTACAGCCAACCGTCTCCTTCAGTTCCTGTTTGGCCCAGATTCCTGACGT----TGACCATGCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106510698 94 - 171882078 -CTGGGAGGGGGCTGCAGGCAGATGGTTCAGTGGTTAGAGCCAACCACCTCCTTCAGTTCCTGTTTGGCCTAGATTCCTGACGT----TGACCATGCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6244677 94 -   6271500 -CTGGGAGGGGGCTGCAGGCAGATGGTTCAGTGGTTAGAGCCAACCGTCTCCTTCAGTTCCTGTTTGGCCCAGATTCCTGACGT----TGACCATGCCC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5137399 94 +   5160157 -CTGGGAGGGGGCTGCAGGCAGATGGTTCAGTGGTTACAGCCAACCGTCTCCTTCAGTTCCTGTTTGGCCCAGATTCCTGACGT----TGACCATGCCC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7706227 94 +  58131712 -CTGGAAGGGGGCTGCAGGCAGGTGGTTCAGTGGTTAGGGCCAACCATCTAGTTCCTTCCTGGCCTGGCCCAGAGCCCTGACAT----TGACCAAGCCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1095300 94 +   1458659 -CTAGGAGGGGGCTGCAGGCAGATGGTTCAGTGGTTACAGCCAACCGTCTCCTTCAGTTCCTGTTTGGCCCAGATTCCTGACGT----TGACCATGCCC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       305793 94 +   4111199 -CTGGGAGGGGGCTGCAGGCAGATGGTTCAGTGGTTAGAGCCAACCGTCTCCTTCAGTTCCCGTTTGGCCCAGATTCCTGACGT----TGACCATGCCC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114223933 94 - 132174527 -CTGGGAGGGGGTTGCGGGCAGGTGGTTCAGTGGTTAGGGCCAACCAGCTACTTCAGTTCCTGTCTGGTCCAGAGTCCTGACAT----TGGCCATGTCC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2880595 94 +   3282555 -CTGGGAGGGGGTTGCGGGCAGGTGGTTCCGTGGTTAGGGCCAACCAGCTACTTCAGTTCCTGCCTGGCCCAGAGTCCTGACGT----TGGCCATGTCC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       833046 94 +   1024465 -CTGGGAGGGGGTTGCAGGCAGGTGATTCAGTGGTTAGGGCCAACCAGCTACTTCAGTTCCTGCCTGGCCAAGAGTCCTGACAT----TGGCCATGTCC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2752880 94 -   3745603 -CTGGGAGGGGGTTGCGGGCAGGTGGTTCAGTGGTTAGGGCCAACCAGCTACTTCAGTTCCTGTCTGGCCCAGAGTCCTGACAT----TGGCCAGGTCC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8723941 93 -  36342412 -CTGGGAGG-GGCTGCAGGCAGGCAGGTCAGTGGTTAGGGCCAGCCATCTAGTTCAGTTCCTGCCCAGCCCAAAGTTTTAACTC----TGACCATGCCC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56881855 84 + 124595110 -TGGGAAGGGAGCAAGAGGCAGGTGGTTCAGTGGTTAGGGCCAGCCGTGCACCTTAGT----GCCTGACCCAGAGCCC----------TGCCTAACACT
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1731441 97 -  40214260 -CTGCGAGGGGGCTAGGGGCAGGTGGTTCAGGGGTTAGAGCCAGCCAGCGCCTTCACTTCCGGCCTGGTAC-GGGCCCTGAGGCCCTATGACGATGTCC
i canFam3.chr30             I 2 I 63
s dasNov3.JH572216             197984 92 -   1040364 ACTGGGAGGGGCCTG-AGACAAGTAGTTCAGTGGTTAGGACAGGCCACCTGGTGCAGT-CCTGTCTGGTC-AGACCCCGGAGCT----TGACCGTGCCC
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=240189.000000
s hg38.chr15_KI270850v1_alt    245968 30 +    430880 TAGT--GGGTGTATGTATACCTTTAGTGCAAG
s panTro5.chrY               25707756 30 -  26350515 TAGT--GGGTGTATGTATACCTTTAGTGCAAG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       344607 30 +    378907 TAGT--GGGTGTATGTATACCTTTAGTACAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62583554 30 + 169600520 TAGT--GGGTGTACATATACATTTAGTGCAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106510792 30 - 171882078 TAGT--GGGTGTACATATACCTTTAGTGCAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6244771 30 -   6271500 TAGT--GGGTGTACATATACCTTTAGTGCAAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5137493 30 +   5160157 TAGT--GGGTGTACATATACCTTTAGTGCAAG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7706321 30 +  58131712 TGGC--TGGTCTACATATGCCTTTAGCACAAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1095394 30 +   1458659 TAGT--GGGTGTACATACACCTTTAGTGCAAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       305887 30 +   4111199 TAGT--GGGTGTACGTATACCTGTAGTGCAAG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114224027 30 - 132174527 TGGA--GGGTCTACATATACCTTTAGTTCAAG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2880689 30 +   3282555 TGGA--GGGTCTACATATACCTTTAGTTCAAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       833140 30 +   1024465 TGGA--GGGTCTACATATACCTTTAGTTCAAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2752974 30 -   3745603 TGGA--GGGTCTATATATACCTTTAGTTCAAG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8724034 32 -  36342412 CGGCAGGGGGGTACGTATACCTGTAGTGCAAG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56881939 20 + 124595110 TAGC------------ATACCTTCTGGGCAAG
i mm10.chr9                 C 0 C 0
s dasNov3.JH572216             198076 30 -   1040364 CAAC--AGGTTTATATGCACCCCTGGTGCAAG
i dasNov3.JH572216          C 0 C 0
e canFam3.chr30               1731538 63 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=23791.000000
s hg38.chr15_KI270850v1_alt    245998 5 +    430880 GGTGG---
s panTro5.chrY               25707786 5 -  26350515 GGTGG---
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       344637 5 +    378907 GGTGG---
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62583584 5 + 169600520 GGTGG---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106510822 5 - 171882078 GGTGG---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6244801 5 -   6271500 GGTGG---
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5137523 5 +   5160157 GGTGG---
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7706351 5 +  58131712 GGTGG---
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1095424 5 +   1458659 GGTGG---
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       305917 5 +   4111199 GGTGG---
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530            8724066 5 -  36342412 GGTGG---
i otoGar3.GL873530          C 0 I 13
s mm10.chr9                  56881959 4 + 124595110 -GGGG---
i mm10.chr9                 C 0 C 0
s dasNov3.JH572216             198106 5 -   1040364 ---GGGAT
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1      2753004 0 -   3745603 C
e calJac3.chr10             114224057 0 - 132174527 C
e canFam3.chr30               1731538 63 -  40214260 I
e cebCap1.NW_016107979v1       833170 0 +   1024465 C
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2880719 0 +   3282555 C

a score=13201.000000
s hg38.chr15_KI270850v1_alt    246003 4 +    430880 tgtg-
s panTro5.chrY               25707791 4 -  26350515 tgtg-
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       344642 4 +    378907 tgtg-
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62583589 4 + 169600520 tgtg-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106510827 4 - 171882078 tgtg-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6244806 4 -   6271500 tgtg-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5137528 4 +   5160157 TCtg-
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7706356 4 +  58131712 tgtg-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1095429 4 +   1458659 tgtg-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       305922 4 +   4111199 Cgtg-
i colAng1.NW_012116021v1    C 0 C 0
s mm10.chr9                  56881963 4 + 124595110 TGTG-
i mm10.chr9                 C 0 I 19
s dasNov3.JH572216             198111 4 -   1040364 -GGGG
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1      2753004 0 -   3745603 C
e calJac3.chr10             114224057 0 - 132174527 C
e canFam3.chr30               1731538 63 -  40214260 I
e cebCap1.NW_016107979v1       833170 0 +   1024465 C
e otoGar3.GL873530            8724071 13 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2880719 0 +   3282555 C

a score=53319.000000
s hg38.chr15_KI270850v1_alt    246007 13 +    430880 acagttaatactg
s panTro5.chrY               25707795 13 -  26350515 atggttaatactg
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       344646 13 +    378907 acggttaatactg
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62583593 13 + 169600520 atggttaatactg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106510831 13 - 171882078 atggttaatactg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6244810 13 -   6271500 atggttaatactg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5137532 13 +   5160157 atggttaatactg
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7706360 13 +  58131712 atagttaatactg
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1095433 13 +   1458659 atggttaatactg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       305926 13 +   4111199 atggttaatactg
i colAng1.NW_012116021v1    C 0 C 0
s dasNov3.JH572216             198115 13 -   1040364 GGAGTCACTCCTG
i dasNov3.JH572216          C 0 I 9
e aotNan1.NW_018511953v1      2753004  0 -   3745603 C
e mm10.chr9                  56881967 19 + 124595110 I
e calJac3.chr10             114224057  0 - 132174527 C
e canFam3.chr30               1731538 63 -  40214260 I
e cebCap1.NW_016107979v1       833170  0 +   1024465 C
e otoGar3.GL873530            8724071 13 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2880719  0 +   3282555 C

a score=1343801.000000
s hg38.chr15_KI270850v1_alt    246020 379 +    430880 agtgtcaacttgattgggttgaaggctgcaaagtattgacctactggaagtgtctgtgagggcattgtaaaaggagataaacatttgagtcagtgggctggggaaggcagacccacctttaatactggtgggtaccatctttctaatcagctgctagcgaatataaagcaggcagaaaaacatgaaaaggtaagattggcctagcttcccagcctacatctttctcccatgctggacacttcctgccctctaacatcggactccaggttcttcagttttgagactcggattggctctccttgctcctcaaacttgcagacagcctattgtgggaccttgtgattgtgtaagttaatacttcataaactcccc--------------tttatat
s panTro5.chrY               25707808 379 -  26350515 agtgtcaacttgattcggttgaaggctgcaaagtattgatctcctgggtgtgtctgtgagggcgttgtaaaaggagattaacatttgagccagtgggctggggaaggcagacccacccttaatactggtgggcaccatctttctaatcagttgctagtgaatataaagcaggcagaaaaatgtgaaaaggcaagactggcctagcctcccagcctacgtctttctctcacactggacacttgctgccctctagcatcggactccaagttcttcagttttgagactcaaattgtctctccttgcacctcaaacttgcagacagcctattgtgggaccttgtgattgtgtaagttaatacttgataaactcccc--------------tttatat
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       344659 379 +    378907 agtgtcaacttgattcggttgaaggctgcaaagtattgatctcctgggtgtgtctgtgagggctttgtaaaaggagattaatatttgagccagtgggctggggaaggcagactcacccttaatactggtgggcaccatctttctaatcagttgctagcgaatataaagcaggcagaaaaacgtgaaaaggcaagactggcctagcctcccagcctacatctttctcccatgctggacgcttgctgccctctagcatcggactccaagttcttcagttttgagactcggattgtctctccttgctcctcaaacttgcagacagcctattgtgggaccttgtgattgtgtaagttaatacttgataaactcccc--------------tttatac
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62583606 368 + 169600520 agtgtcaacttgattgggttgaaggctgcaaagtattgatcccttgggtgtgtctgtgagggtgttgtaaaaggagactaacatttgagtcagtgggctggggaaggcaaacccacccttaatactggtgggcacca----tctaatgagctgccagtgaatataaagcaggcagaaaaatgtgaaaaggcaagactggagcagcctcccagcctacatctttctcccctgctggatgcttcctgccctttaacatcggactccaagttcttgagttttgagactcggactggctcctcttgctcctcaaacttgcagacagcttattgtgggaccgtgtgattgtgtaagttaatatttaataagctcccc---------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106510844 368 - 171882078 agtgtcaacttgattgggttgaaggctgcaaagtattgatcccttgggtgtgtctgtgagggtgttgtaaaaggagactaacatttgagtcagtgggctggggaaggcaaacccacccttaatactggtgggcacca----tctaatgagctgccagtgaatataaagcaggcagaaaaatgtgaaaaggcaagactggaccagcctcccagcctacatctttctcccctgctggatgcttcctgccctctaacatcggactccaagttcttgagttttgagactccgactggctcttcttgctcctcaaacttgcagacagcctattgtgggactgtgtaattgtgtaagttaatatttaataaactcccc---------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6244823 368 -   6271500 agtgtcaacttgattgggttgaaggttgcaaagtattgatcccttgggtgtgtctgtgagggtgttgtaaaaggagactaacatttgagtcagtgggctggggaaggcaaacccacccttaatactggtgggtacca----tctactgagctgccagtgaatataaagcaggcagaaaaatgtgaaaaggcaagactggagcagcctcccagcctacatctttctcccctgctggatgcttcctgccctctaacatcggactccaagttcttgagttttgagactcggactggctcttcttgctcctcaaacttgcagacagcctattgtgggactgtgtgattgtgtaagttaatatttaataagctcccc---------------------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5137545 367 +   5160157 agtgtcaacttgattgggttgaaggctgcaaagtattgatcccttgggtgtgtctgtgagggtgttgtaaaaggagactaacatttgagtcagtgggctggggaaggcaaacccacccttaatactggtgggcact-----tctaatgagctgccagtgaatataaagcaggcagaaaaatgtgaaaaggcaagactggagcagcctcccagcctacatctttctcccctgctggatgcttcctgccctctaacatcggactccaagttcttgagttttgagactcggactggctcttcttgctcctcaaacttgcagacagcctattgtgggaccgtgtgattgtgtaagttaatatttaataaactcccc---------------------
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7706373 373 +  58131712 actgtcaacttgattgggttgaagggtgcaaagtattgatcc--tgggtgtgtctgcgagggtgttgccaaaggagattaacatttgactcagtgggctggggaaggcagacccacccttcatactggtgggcacca----tctgatcatctgtcagcaaatataaagcaggcagaaaaatgtgaaaatgcgagactggcccagcctcccagcctacatctttctcccatgctggacatgtcctcccctctaacattggactcgaagttcttcagttttgggactcagactgggtctccttgctcctcaagcttgcagacagcctattgagggaccttgtgattgttcaagttagtacttaataaattcccctttatat--------------
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1095446 368 +   1458659 agtgtcaacttgattgggctgaaggctgcaaagtattgatcccttgggtgtgtctgtgagggtgttgtaaaaggagactaacatttgagtcagtgggctgggaaaggcaaacccacccttaatactggtgggcacca----tctaatgagctgccagtgaatataaagcaggcagaaaaatgtgaaaaggcaagactggagcagcctcccagcctacatctttctcccctgctggatgcttcctgccctctaacatcggactccaagttcttgagttttgagactcggactggctcttcttgctcctcaaacttgcagacagcctattgtgggaccgtgtgattgtgtaagttaatatttaataaactcccc---------------------
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       305939 374 +   4111199 agtgtcaacttgattgggttgaaggctgcaaagtattgatcccttgggtgtgtctgtgagggtgttgtaaaaggagattaacatttgagtcagtgggctggggaaggcaaacccacccttaatactggtgggcacca----tctaatgagctgccagtgaatataaagcgggcagaaaaatgtgaaaaggcaagagtggaccagcctcccagcctacatctttctcccctgctggatgcttcctgccctctaa-atcggactccaagttcttgagttttgagactcgggctgggtcttcttgctgctcaaacttgcagacagcctattgtgggaccatgtgattgtgtaagttaatatttaataaacttccc-------tttctat-------
i colAng1.NW_012116021v1    C 0 I 21
e aotNan1.NW_018511953v1      2753004   0 -   3745603 C
e mm10.chr9                  56881967  19 + 124595110 I
e calJac3.chr10             114224057   0 - 132174527 C
e dasNov3.JH572216             198128   9 -   1040364 I
e canFam3.chr30               1731538  63 -  40214260 I
e cebCap1.NW_016107979v1       833170   0 +   1024465 C
e otoGar3.GL873530            8724071  13 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2880719   0 +   3282555 C

a score=-1866.000000
s hg38.chr15_KI270850v1_alt    246399 28 +    430880 atctatctatatctatatctattatcta-----
s panTro5.chrY               25708187  6 -  26350515 atccat---------------------------
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       345038  6 +    378907 atctat---------------------------
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26               7706746 11 +  58131712 atctat----------------------atcta
i chlSab2.chr26             C 0 C 0
e aotNan1.NW_018511953v1      2753004  0 -   3745603 C
e mm10.chr9                  56881967 19 + 124595110 I
e calJac3.chr10             114224057  0 - 132174527 C
e dasNov3.JH572216             198128  9 -   1040364 I
e canFam3.chr30               1731538 63 -  40214260 I
e cebCap1.NW_016107979v1       833170  0 +   1024465 C
e otoGar3.GL873530            8724071 13 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       306313 21 +   4111199 I
e manLeu1.NW_012105520v1      1095814  0 +   1458659 C
e cerAty1.NW_012001384v1      5137912  0 +   5160157 C
e macNem1.NW_012011056v1      6245191  0 -   6271500 C
e macFas5.chr7              106511212  0 - 171882078 C
e rheMac8.chr7               62583974  0 + 169600520 C
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2880719  0 +   3282555 C

a score=201810.000000
s hg38.chr15_KI270850v1_alt    246427 146 +    430880 ---------tatctatatctatatctattatctatatctatatctatatctatatctatatctatatctatatctatatcta--------------tatctatatctatatctatatctgtctatatctcctattagttctgtccctctagggaaccctgattaacaca
s panTro5.chrY               25708193  74 -  26350515 ---------------------------------------------------------------------------------a--------------tatctatatttatatctatatctgtctatatctcctattagttctgtccctctagggaaccctgactaacaca
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       345044  76 +    378907 -----------------------------------------------------------------------atctat----a--------------tatctatatttatatctatatctgtctatatctcctattagttctgttcctctagggaaccc----taacACA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62583974  87 + 169600520 --------tt------------------------------------------------------tctatctatctatatatc--------------tatctatatctatacctatatctatatatctctt------attctatccctctagggaaccctgactagcaca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106511212 107 - 171882078 --------tt----------------------------------tctatctatctatctatctatctatctatctatctatc--------------tatctatatctatacctatatctatatatctctt------attctatccctctagggaaccctgactagcaca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6245191  87 -   6271500 --------tt------------------------------------------------------tctatctatctatatatc--------------tatctatatctatacctatatctatatatctctt------attctatccctctagggaaccctgactagcaca
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5137912  87 +   5160157 --------tt------------------------------------------------------tctatctatctatgtatc--------------tatctatatctatacctatatctatatatatctt------attctatccctctagggaaccctgactagcaca
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7706757 115 +  58131712 tatctatatc------------------------------------------------------tatatctatatctgtatctgtatctatatctatatctacatctatatctatatctatatctatctcctataacttctgtccctctagggaaccctgattaacaca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1095814  87 +   1458659 --------tc------------------------------------------------------tctatctatctatgtatc--------------tatctatatctatacctatatctatatatatctt------attctatccctctagggaaccctgactagcaca
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       306334  91 +   4111199 ----------------------------------------------------------tatctatctatctatctatttatc--------------tatctatatctatacctatttctatatatctctt------attctgtccctctagggaaccctgactaacaca
i colAng1.NW_012116021v1    I 21 C 0
e aotNan1.NW_018511953v1      2753004   0 -   3745603 C
e mm10.chr9                  56881967  19 + 124595110 I
e calJac3.chr10             114224057   0 - 132174527 C
e dasNov3.JH572216             198128   9 -   1040364 I
e canFam3.chr30               1731538  63 -  40214260 I
e cebCap1.NW_016107979v1       833170   0 +   1024465 C
e otoGar3.GL873530            8724071  13 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2880719   0 +   3282555 C

a score=68757.000000
s hg38.chr15_KI270850v1_alt    246573 8 +    430880 GGTGGGTA
s panTro5.chrY               25708267 8 -  26350515 GGTGGGTA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       345120 8 +    378907 GGTGGGTA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62584061 8 + 169600520 GGTGGGTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106511319 8 - 171882078 GGTGGGTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6245278 8 -   6271500 GGTGGGTA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5137999 8 +   5160157 GGTGGGTA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7706872 8 +  58131712 GGTGGGTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1095901 8 +   1458659 GGTGGGTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       306425 8 +   4111199 GGTGGGTG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114224057 8 - 132174527 GGTGGGTA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2880719 8 +   3282555 GGTGGGTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       833170 8 +   1024465 GGTGGGTA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2753004 8 -   3745603 GGTGGGTA
i aotNan1.NW_018511953v1    C 0 C 0
e mm10.chr9                  56881967 19 + 124595110 I
e dasNov3.JH572216             198128 9 -   1040364 I
e canFam3.chr30               1731538 63 -  40214260 I
e otoGar3.GL873530            8724071 13 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=27121.000000
s hg38.chr15_KI270850v1_alt    246581 5 +    430880 GGCAC
s panTro5.chrY               25708275 5 -  26350515 GGCAC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       345128 5 +    378907 GGCAC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62584069 5 + 169600520 GGCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106511327 5 - 171882078 GGCAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6245286 5 -   6271500 GGCAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5138007 5 +   5160157 GGCAC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7706880 5 +  58131712 GGCTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1095909 5 +   1458659 GGCAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       306433 5 +   4111199 GGCAC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114224065 5 - 132174527 GGGGC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2880727 5 +   3282555 GGGGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       833178 5 +   1024465 GAGGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2753012 5 -   3745603 GGAGC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8724084 5 -  36342412 GGGAG
i otoGar3.GL873530          I 13 C 0
e mm10.chr9                  56881967 19 + 124595110 I
e dasNov3.JH572216             198128 9 -   1040364 I
e canFam3.chr30               1731538 63 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=16152.000000
s hg38.chr15_KI270850v1_alt    246586 2 +    430880 AG
s panTro5.chrY               25708280 2 -  26350515 AG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       345133 2 +    378907 AG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62584074 2 + 169600520 AG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106511332 2 - 171882078 AG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6245291 2 -   6271500 AG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5138012 2 +   5160157 AG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7706885 2 +  58131712 AG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1095914 2 +   1458659 AG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       306438 2 +   4111199 AC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114224070 2 - 132174527 AG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2880732 2 +   3282555 AG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       833183 2 +   1024465 AG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2753017 2 -   3745603 AG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8724089 2 -  36342412 AA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56881986 2 + 124595110 AA
i mm10.chr9                 I 19 C 0
e dasNov3.JH572216             198128 9 -   1040364 I
e canFam3.chr30               1731538 63 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=13600.000000
s hg38.chr15_KI270850v1_alt    246588 1 +    430880 G
s panTro5.chrY               25708282 1 -  26350515 G
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       345135 1 +    378907 G
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62584076 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106511334 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6245293 1 -   6271500 G
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5138014 1 +   5160157 G
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7706887 1 +  58131712 G
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1095916 1 +   1458659 G
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       306440 1 +   4111199 G
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114224072 1 - 132174527 G
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2880734 1 +   3282555 G
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       833185 1 +   1024465 G
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2753019 1 -   3745603 G
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8724091 1 -  36342412 G
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56881988 1 + 124595110 G
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1731601 1 -  40214260 G
i canFam3.chr30             I 63 C 0
e dasNov3.JH572216             198128 9 -   1040364 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=2534229.000000
s hg38.chr15_KI270850v1_alt    246589 268 +    430880 GAGATGTGCCCCCTTCCCCGTGGgtgctgggtaggtaaatgtttcgcaaagggctttgttggggagagggaaccctgattttcagtatttgc--ctcttttcctggtataaatattcccactgtgggcagtatcacctgcctctcaaaattcctgaaaattcaacagttggctcctggc---------agctgctgtgagccg-ttccagcCGGTGACTGTGGTGGCTCCATCCTGCA-GGGCCATGTGCCCCCACCCCTTGTGCTATGGCCTCCCTCACT
s panTro5.chrY               25708283 268 -  26350515 GAGATGTGCCCCCTTCCCTGTGGgtgctgggtaggtaaatgtttagcaatgggctttcttggggagagggaaccctgattttcagtatttgc--ctcttttcctggtataaatattcccactgtgggcagtatcaCATggctctcaaaattcctgaaaattcaacagttggctcctggc---------cactgctgtgagccg-ttccagcTGGTGACTGTGGTGGCTCCATCCTGCA-GGGCCATGTGTCCCCACCCCTTGTGCTATGGCCTCCCTCACT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       345136 268 +    378907 GAGATGTGCCCCCTTCCCTGTGGgtgctgggtaggtaaatgtttagcaatgggctttcttggggagagggaaccctgattttcagtatttgc--ctcttttcctggtataaatattcccactgtgggcagtatcacctggctctcaaaattcctgaaaattcagcagttggctcctggc---------tgctgctgtgagcca-ttccagcTGGTGACTGTGGTGGCTCCATCCTGCA-GGGCCATGTGTCCCCACCCCTTGTGCTATGGCCTCCCTCACT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62584077 268 + 169600520 GAGATGTGTCCCCTTCCCCATGGgtgctgggtaggtaaatgtttagcagtgggctttcttggggagagggaaccctgattttcagtatttgc--ctctttgcctggtgtaaatattcccactgtgggcagtctcacctggctctcaaaattcctgaaaatgcaacagtcggctcctggc---------agctgctgtgagcta-ttccagcCGGTGACGGTGGTGGCTCCATCCTGCA-GGGCCATGTGCCCCCACCCCTTGTGCTATGGCCTCCCTCCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106511335 268 - 171882078 GAGATGTGTCCCCTTCCCCATGGgtgctgggtaggtaaatgtttagcagtgggctttcttggggagagggaaccctgattttcagtatttgc--ctctttgcctggtgtaaatattcccactgtgggcagtctcacctggctctcaaaattcctgaaaatgcaacagttggctcctggc---------agctgctgtgagcta-ttccagcCGGTGACGGTGGTGGCTCCATCCTGCA-GGGCCATGTGCCCCCACCCCTTGTGCTATGGCCTCCCTCCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6245294 268 -   6271500 GAGATGTGTCCCCTTCCCCATGGgtgctgggtaggtaaatgtttagcagtgggctttcttggggagagggaaccctgattttcagtatttgc--ctctttgcctggtgtaaatattcccactgtgggcagtctcacctggctctcaaaattcctgaaaatgcaacagtcggctcctggc---------agctgctgtgagcta-ttccagcCGGTGACGGTGGTGGCTCCATCCTGCA-GGGCCATGTGCCCCCACCCCTTGTGCTATGGCCTCCCTCCCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5138015 268 +   5160157 GAGATGTGTCCCCTTCCCCATGGgtgctgggtaggtaaatgtttagcagtgggctttcttggggagagggaaccctgattttcagtatttgc--ctctttgcctggtataaatattcccactgtgggcagtctcacctggctctcaaaattcctgaaaatgcaacagttggctcctggc---------agctgctgtgagcta-ttccagcCAGTGACGGTGGTGGCTCCATCCTGCA-GGGCCATGTGCCCCCACCCCTTGTGCTATGGCCTCCCTCCCT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7706888 268 +  58131712 GAGACGTGCCCTCTTCCCCGTGGgtgctgggtaggtaaatgtttagcaatgggctttcttggggagggggaacccttatttacagtgtttgc--ctcttttcctggtataaatattctcactatgggcagtatcacccggctctcaaaattcctgaacattcaacagttggctcctggc---------agctgctgtgagccg-ctccagcCGGTGGCAGTGGTAGCTCCATCCTGCA-GGGCCGTGTGCCCCCACCCCTTGTGCTATGGCCTCCCTCACT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1095917 268 +   1458659 GAGATGTGTCCCCTTCCCCATGGgtgctgggtaggtaaatgtttagcagtgggctttcttggggagagggaaccctgattttcagtatttgc--ctctttgcctggtataaatattcccactgtgggcagtgtcacctggctctcaaaattcctgaaaatgcaacagtcggctcctggc---------agctgctgtgagcta-ttccagcTGGTGACGGTGGTGGCTCCATCCTGCA-GGGCCATGTGCCCCCACCCCTTGTGCTATGGCCTCCCTCCCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       306441 268 +   4111199 GAGATGTGTCCCCTTCCCTGTGGgtgctgggtaggtaaatgtttagcagtgggctttcttggggagagggaaccctgattttcagtatttgc--ctctttgcctggtataaatattcccgctgtgggcagtatcacctggctctcaaaattcctgaaaatgcaacagttggcttctggc---------agctgctgtgagcta-ttccagcCAGTGACGGTGGTGGCTCCATCCTGCA-GGGCCACGTGCCCCCACCCCTTGTGCACGTGCCCCCACCCCT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114224073 269 - 132174527 GACATGTGCCCCCTTCCCCGTGGGCGCtgggcaggtaaatgtttagaagtgggctattggggagagggggatccctgatttgcaatatttgc--ctcttttcctggcataaatattctcactgtggGCAGtaccacctgactctcaaaattcctgaaaattcaacagtgggctcctggc---------acctgctgtgagccg-ctccagcCGGTGCCAGGGGTGGCTCCATCCTGCAGGGGCCATGTGCCCCCACCCCCTGTGTGACGGCCTCCCTCACT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2880735 268 +   3282555 GACGTGTGCCCCCTTCCCTGTGGGCACtgggcaggtaaatgtttagcaatgggctatttgggggaggcggatccctgatttgtactatttgc--ctcttttcctggcataaatattctcactgtggGCAGtaccacctgactctcaaaattcctgaaaattcaagagtgggctcctggc---------agctgctgtgagccg-ctccagcCGGTGCC-GGGGTGGCTCCATCCTGCAGGGGCCATGTGCCCCCACCCCTTGTGCGACGGCCTCCCTCACT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       833186 268 +   1024465 GACATGTGTCCCCTTCCCTGTGagtgctgggcaggtaaatgtttagcaatgggctatttgggggagggggatccctgatttgcagtatttgc--ctcttttcctggcataaatattctcactgtgCGCAGtaccacctgactctcaaaattcctgaaaattcaacagtgggctcctggc---------agctgctgcgagctg-ctctagcCGGTGCC-GGGGTGGCTCCATCTTGCAGGGGCCATGTGCCCCCACCCCTTGTGTGACATCCTCCCTCACT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2753020 269 -   3745603 GACATGTGCCCCCTTCCCTGTGGGCGCtgggcaggtaaatgtttagcaatgggctatttgggggagggggatccctgatttgcaatatttgc--ctcttttcctgacataaatattctcattgtggGCAGtaccacctgactctcaaaattcctgaaaattcaacagtgggctcctggc---------agctgctgtgagccg-ctccagcCGGTGCCAGGGGTGGCTCCATCCTGCAGGGGCCATGTGCTCCCACCCCTTGTGCGACAGCCTCCCTCACT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8724092 264 -  36342412 GAAATGTGCCCCATTCCACATGGgtgctgggcaggtgaatgtttagcagtgggctttctgggggag-gagaaccctgatttatactgtttgc--ctcttcccattatataattattctcactatgggca---tgacctggctcacaatgtt-ctgaaaattcaatagttagctcctgcc---------agctgccatgagcca-ctccagcccaccGTGGTAGTGGCTCCATCCTGTAGGGGCCACATGCCCCCACCCTCTATGCTATAGCTACCCTCAGT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56881989 224 + 124595110 GGACTGTGCCCTCTTCCTTGTGGGTGGTGAGCAGCCCAG---------------------------------CCCCGGGTTGAAATGTTTAC--CTCTTTGCGGGATATAAATATTCTCAGAGTGGGCAGTATCACCTGGCCCACAAAATCCCTG-----------TTCGGCTCTTGCC---------AGCTGCTCCAAGCCA-CTCCAGCCCACCAGGGTGGTGGCTCCATCCTGTGGGGGTCGTGTG-CCCCACCCTCTGTTCCGTGGCTGCCCGTGGT
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1731602 259 -  40214260 GAGAGGAGCCCC--TCCCCGTGCACCCT-AACAggtaaaggttgagcaacaggctttctgggagaaagggaaccccgatttgtagcacttgc--ctcttc-cagggtataaatactgccac--cCGGCCACATCGCCCGGAGGgccaaactcctgcaaagttaacactcagctcttgcc---------agccgctgtgagc----TCCGGCCTGCCCTGGTGAT-GCTCCATCCTGAGGAGGCCACGCGTCCTCCCCTTCTGTCCTGGGGCTGCCCTCAGT
i canFam3.chr30             C 0 I 225
s dasNov3.JH572216             198137 256 -   1040364 GGGGCGTGCCCCCTTCCCCATGGGTGGAAGGTAAGTAAATGCTTAACATCAGTCTTTCATGGGGGCGTGGGGCCCTGGTCTGTTGTGTTTTCCTCTCTTTGGGTGGTGTAAATATTCCCGCTAC-GGCAAAGGcacctggctcacaaaattcctgaacattcagccatcggctcttgccccagtaatgagcGCCCGTGAGCCAGCTGCAGCCTCCCTGGGCGGTGGC-CCGCCCTGCA-GGGCC---------------------TGAGGCAGCCCTCGG-
i dasNov3.JH572216          I 9 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=12376.000000
s hg38.chr15_KI270850v1_alt    246857 1 +    430880 T
s panTro5.chrY               25708551 1 -  26350515 T
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       345404 1 +    378907 T
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62584345 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106511603 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6245562 1 -   6271500 T
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5138283 1 +   5160157 T
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7707156 1 +  58131712 T
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1096185 1 +   1458659 T
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       306709 1 +   4111199 T
i colAng1.NW_012116021v1    C 0 I 19
s calJac3.chr10             114224342 1 - 132174527 T
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2881003 1 +   3282555 T
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       833454 1 +   1024465 T
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2753289 1 -   3745603 T
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8724356 1 -  36342412 T
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56882213 1 + 124595110 T
i mm10.chr9                 C 0 C 0
s dasNov3.JH572216             198393 1 -   1040364 T
i dasNov3.JH572216          C 0 C 0
e canFam3.chr30               1731861 225 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=22131.000000
s hg38.chr15_KI270850v1_alt    246858 7 +    430880 TAGTGTG
s panTro5.chrY               25708552 7 -  26350515 TAGTCTG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       345405 7 +    378907 TAGTGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62584346 7 + 169600520 TAGTGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106511604 7 - 171882078 TAGTGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6245563 7 -   6271500 TAGTGTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5138284 7 +   5160157 TAGTGTG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7707157 7 +  58131712 TAGTGTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1096186 7 +   1458659 TAGTGTC
i manLeu1.NW_012105520v1    C 0 C 0
s calJac3.chr10             114224343 2 - 132174527 -----TG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2881004 2 +   3282555 -----CG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       833455 2 +   1024465 -----TG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2753290 2 -   3745603 -----TG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8724357 7 -  36342412 TAGCATA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56882214 7 + 124595110 TGGCCTC
i mm10.chr9                 C 0 C 0
s dasNov3.JH572216             198394 7 -   1040364 GACCGTG
i dasNov3.JH572216          C 0 C 0
e canFam3.chr30               1731861 225 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       306710 19 +   4111199 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=130133.000000
s hg38.chr15_KI270850v1_alt    246865 15 +    430880 CTGTGTTTTGCTCTT
s panTro5.chrY               25708559 15 -  26350515 CTGTGTTTTGCTCTT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       345412 15 +    378907 CTGTGTTTTGCTCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62584353 15 + 169600520 CTGTGTTTCGCTCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106511611 15 - 171882078 CTGTGTTTCGCTCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6245570 15 -   6271500 CTGTGTTTCGCTCTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5138291 15 +   5160157 CTGTGTTTCGCTCTG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7707164 15 +  58131712 CTGTGTTTTGCTCTA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1096193 15 +   1458659 CTGTGTTTCGCTCTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       306729 15 +   4111199 CTGTGTTTCGCTCTT
i colAng1.NW_012116021v1    I 19 C 0
s calJac3.chr10             114224345 15 - 132174527 CTGTGTTTTGCTCTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2881006 15 +   3282555 CTATGTTTTGCTCTT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       833457 15 +   1024465 CTGTGTTTTACTCTT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2753292 15 -   3745603 CTGTGTTTTGCTCTT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8724364 15 -  36342412 ATGTGTTTTActcct
i otoGar3.GL873530          C 0 I 914
s mm10.chr9                  56882221 13 + 124595110 CTGCATTTTGCTC--
i mm10.chr9                 C 0 C 0
s dasNov3.JH572216             198401 15 -   1040364 CAGGGCTGAGCCCTT
i dasNov3.JH572216          C 0 C 0
e canFam3.chr30               1731861 225 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=2120078.000000
s hg38.chr15_KI270850v1_alt    246880 276 +    430880 AGGAATCAATGTCTTTGCAGATAAGGCACCCC-AGTAGCTGGCCGCCACCTGC-----AGTTCCCTGGTCTGTCTCTTGCTGGCACCAA---------------------------------------------------------------------------------GCTGTGCTGTGCCTGCTGAGACTGCTGGGCCACCCCCGTGCAGATGG-TCTGCGGGGCTTGCTTGATTCCCTTAGCTTCCCAGCCAAGGTGCTGGTGTTGCCAG-CAGTG----CTGGCAGGAGGAGGGGATAACTAGAGGGGATTT-AACTCAACCCGAGGGGCTCTTACGGG----ATCTTTCCTGGATATCCCTCC-----AGGTG
s panTro5.chrY               25708574 273 -  26350515 AGGAATCAATGTCTTTGCAGATAAGGCACACC-AGTA---GGCCACCACCTGC-----AGTTCCCTGGTCTGTCTCTTGCTGGCACCAA---------------------------------------------------------------------------------GCTGTGCTGTGCCTGCTGAGACTGCTGGGCCACCCCCACGCAGATGG-TCTGCGAGGCTTGCTTGATTCCCTTAGCTTCCCAGCCAAGGTGCTGGTGTTGCCAG-CAGTG----CTGGCAGGAGGAGGGGATAACTAGAGGGGATTT-AACTCAACCTGAGGGGCTCTTACAGG----ATCTTTCCTTGATATCCCTCC-----AGGTG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       345427 273 +    378907 AGGAATCAATGTCTTTGCAGATAAGGCACCCC-AGTA---GGCCGCCACCTGC-----AGTTCCCTGGTCTGTCTCTTGCTGGCACCAA---------------------------------------------------------------------------------GCTGTGCTGTGCCTGCTGAGACTGCTGGGCCACCCCCGCACAGATGG-TCTGCGGGGCTTGCTTGATTCCCTTAGCTTCCCAGCCAAGGTGCTGGTGTTGCCAG-CAGTG----CTGGCAGGAGGAGGGGATAACTAGAGGGGATTT-AACTCAACCCGAGGGGCTCTTACGGG----ATCTTTCCTTGATATCCCTCC-----AGGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62584368 263 + 169600520 AGGAATCAATGTCTTTGCAGATAAGGCACCCC-AGTAGGTGGCCGCCACCTGC-----AGTTCCCTGGTCTGTCTCTTGCTGGCACCAA---------------------------------------------------------------------------------GCTGTGCTGTGCCTGCTGAGCCTGCCGCGC--------------TGT-TCTGCGGGGCTTACTTGATTCCCTTAGCTTCCCAGACATGG---TGGTGTTGCCAG-CAGTGCCCACCGGCAGGAGGAGGGGATAACTACAGGGGATTT-AACTCAGCCCGAGGGGCTCTTACGGG----ATCTTTCCTGGACATCTCTCC-----AGGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106511626 277 - 171882078 AGGAATCAATGTCTTTGCAGATAAGGCACCCC-AGTAGGTGGCCGCCACCTGC-----AGTTCCCTGGTCTGTCTCTTGCTGGCACCAA---------------------------------------------------------------------------------gctgtgctgtgcttgctgagcctgctgcgcCGCCCCCACGCAGATGG-TCTGCGGGGCTTACTTGATTCCCTTAGCTTCCCAGACATGG---TGGTGTTGCCAG-CAGTGCCCACCGGCAGGAGGAGGGGATAACTACAGGGGATTT-AACTCAGCCCGAGGGGCTCTTACGGG----ATCTTTCCTGGACATCTCTCT-----AGGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6245585 277 -   6271500 AGGAATCAATGTCTTTGCAGATAAGGCACCCC-AGTAGGTGGCCGCCACCTGC-----AGTTCCCTGGTCTGTCTCTTGCTGGCACCAA---------------------------------------------------------------------------------gctgtgctgtgcttgctgagcctgctgcgcCGCCCCCACGCAGATGG-TCTGCGGGGCTTACTTGATTCCCTTAGCTTCCCAGACATGG---TGGTGTTGCCAG-CAGTGCCCACCGGCAGGAGGAGGGGATAACTACAGGGGATTT-AACTCAGCCCGAGGGGCTCTTACGGG----ATCTTTCCTGGACATCTCTCC-----AGGGG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5138306 273 +   5160157 AGGAATCAATGTCTTTGCAGATAAGGCACCCC-AGTAGGTGGCCACCACCTGC-----AGTTCCCTGGTCTGTCTCTTGCTGGCACCAA---------------------------------------------------------------------------------GCTGTGCTGTGCCTGCTGAGCCTGCCGCGCTGCCCCCATGCAGATGG-TCTGCGGGG----CTTGATTCCCTTAGCTTCCCAGACACGG---TGGTGTTGCCAG-CAGTGCCCACCGGCAGGAGGAGGGGATAACTACAGGGGATTT-AACTCAGCCCGAGGGGCTCTTATGGA----ATCTTTCCTGGACATCTCTCC-----AGGGG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7707179 272 +  58131712 AGGAATCAATGTCTTTGCAGATAAGGCACCCC-GGTAGGTGGCCGCCACCTGC-----AGTTCCGTGGTCTGTCCCTTGCTGGTACCGA---------------------------------------------------------------------------------GCTGTGCTGGGCCTGCTGAGCCTGCTGGGCCACCTCCATGCAGATGG-TCTGCAGGGCTCTCTTGATTCCCTTAGCTTCCCAGACAAGGTGCTGGTGTTGCCAG-CAGTG----CTGGCAGGAGGA---GATAACTAGAGGGGATTT-AACTCAGCCCAAGGGGTTTTTAC-GG----ATCTTTCTTGGACATCCTTCC-----TGGTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1096208 277 +   1458659 AGGAATCAATGTCTTTGCAGATAAGGCACCCC-AGTAGGTGGCCGCCACCTGC-----AGTTCCCTGGTCTGTCTCTTGCTGGCACCAA---------------------------------------------------------------------------------GCTGTGCTGTGCCTGCTGAGCCTGCCGCGCCGCCCCCACGCAGATGG-TCTGCGGGGCTTACTTGATTCCCTTAGCTTCCCAGACACGG---TGGTGTTGCCAG-CAGTGCCCACCGGCAGGAGGAGGGGATAACTACAGGGGATTT-AACTCAGCCCGAGGGGCTCTTATGGG----ATCTTTCCTGGACATCTCTCT-----AGATG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       306744 275 +   4111199 AGGAAACAATGTCTTTGCAGATAAGGCACCCC-AGTAGGTGGCCACCACCTGC-----AGTTCCCTGGTCTGTCTCTTGCTGGCACCAA---------------------------------------------------------------------------------GCTGTGCTGTGCCTGCTGAGCCTGCTGGGCCGCCCCTGTGCAGATGG-TCTGCGGGGCTTACTTGATTCCCTTAGCTTCCCAGACAAGGTGCTGGTGTTGCCAG-CAGTG----CTGGCAGGAGGAGGGGATAACTACAGGGGATTT-AACTCAGCCAG-GGGGCTCTTAGGTG----ATCTTTCCTGGACATCTGTCC-----AGGTG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114224360 268 - 132174527 AGGAATCAATGTCTTTGCAGATAAGGCACCCC-TGTAGGTGGCCACCACCTGC-----AGTTCCCTGGTCTGTCCCTTGCTGGCACCGA---------------------------------------------------------------------------------GCTGTGCGGGGCCTGCTGAGCCTGCTGGGCCGCCCCCAGGCAGATGG-GCTGCAGTGCTCGCTCAATCCCCTTCGCTCCCTAGACAGGGTGCTGGTGCCGCCAG-CAGTG----CTTGCAGGAGGA---GATAACTAGAGGGGACTT-AACTCAGCCCAGGGGGTTCTTACAGG----ATCTTTCCTGGACATCTCTCT----------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2881021 258 +   3282555 AGGAATCAATGTCTTTGCAGATAAGGCACCCC-TGTAGGTGGCCACCAGCTGC-----AGTTCCCTGGTCTGTGCCTTGCTGGCACCGA---------------------------------------------------------------------------------GCTGTGCGAGGCCTGTTGAGCCTGCTGGGCTGCCCCCGGGCAGACGG-GCTGCAGTGCTGGCTTGAGTCCCTTAGCTCCCTAGACAGGGTGCTGATGTCACCAG-CAGTG----CCAGCAGAAGGA---GATAACTAGAGGGGATTT-AACTCAGCCCAGGGGAC--------------TCTTTCCTGGACATCCCTCC----------
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       833472 272 +   1024465 AGGAATCAATGTCTTTGCAGATAAGACACACC-TGTAGGTGGCCACCAGCTGC-----AGTTCCCTGGTCTGTCCCTTGCTGGCCCCGA---------------------------------------------------------------------------------GCTGTGCAGGGCCTGCTGAGCCTGCTGGTCTG-CCCCGGGCAGATGG-GCTGCAGCGCTTGCTTGACTCCCTTAGCTCTCTAGACAGGGTGCTGGTGTCACCAG-CAGTG----CCAGCAGGAGGA---GATAACTAGAGGGGACTT-AACTTAGCCCAAGGGACTCTTACGGG----ATCTTTCCTAGACATCCCTCTGGGTG-----
i cebCap1.NW_016107979v1    C 0 I 7
s aotNan1.NW_018511953v1      2753307 268 -   3745603 AGGAATCAATGTCTTTGCAGATAAGACACCCC-TGTAGGTGGCCGCCACCTGC-----AGTTACCTGGTCTGCCCCTTGCTGGCACCGA---------------------------------------------------------------------------------GCTGTGCAGGGCCTGCTGAGCCTGCTGGGCCGTCCCCGGGCAGATGG-GCTGCAGTGCTCACTGGATTCCCTTAGCTCCCTAGACAGGGTGCTGGTGTCACCAG-CAATG----CTGGCAGGAGGA---CCTAACTAGAGGGGACTT-CACTCAGCCCAGGGGGCTCTTACGGG----ATCTTTCCTGGACATCCCTCC----------
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8725293 264 -  36342412 AAGAATCAATGTCCTTGCAGTTAAGGTGCTGT--GCAGGTGCCCAATATGTGCT----AGCCCCCTGGTCTGTCCCTTGCTGGCACTGA---------------------------------------------------------------------------------AGTG---------TGTTTGGCCTCCTGGGCCATACCTGCCTAGAAGGTTTTGCAGATCTCACTTGATTCCTGTAGCTTCCCAGAAAAGGTTTTGGTGTTGCCAG-TAGTG----CTGGCAAAAGGA---GGTAACTAAGGGGAGTCT-GGTTCAGGCCGAGGGG-----AAGAGCATTATCTTTCCTGGACATCCCTCC-----CATCA
i otoGar3.GL873530          I 914 C 0
s mm10.chr9                  56882234 204 + 124595110 -------AA-------GCAGACACGGCACCCCCTACAAGCTCCTACTGCTTGCTGAGCAGTGTCCCGGTCTGAGGTTCCACGACAC-AA---------------------------------------------------------------------------------GATGTGCTGGGCCCACAGAG-------------CCCTGGGCAAGTGG-CTTT--GTGCTCATGACATCCTTTTAACT------------------------CAG-GAGTC-----------------------ACTAGGGAGGATTTCAGCTCAGCCCTGAGAAC---AGCATT----ATCTTTCTTGGCCATCTCTCC-----TG---
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1732086 335 -  40214260 AGGAATCAATGCTTTTGCAGATGAGGTGCCCA-----------CCCCATATCC-----A-TTCTCTGGTCTGCCCCTCACTGGCACCGAGGTctgctgggcctggtggttctgctgggcctggtggttctgctgggtctgctgggcctgctgggtctgctgggcctggtggttctgctgggcctgccgggcctgctggCCCATACCCACCCAGACGGTTTTGTAGCTCTCATTCGATTCCTTTACCCTGTCAGACCAGGTTCTGGCGTCGCCAGCCACTG----CTGGCCAGAGG----GCTAACTGGAGGGATTTC-AGCTCAGCCCAAAAGGA-AGAGCATG----ATCTTTCTTGGCCATCCC-------------
i canFam3.chr30             I 225 C 0
s dasNov3.JH572216             198416 259 -   1040364 AAGAACCCACGCCCCTGCC-ATCAGGCGCCCC--CTACGCGCCTGCCGCTTGCC----CACTCCCCCGCCTGTCCCTC----GCACCCG---------------------------------------------------------------------------------AGGGTGCCGGGCCC----------CTGGGCCGTACCCACCCAGATGGTTCTGCAGGTCTCATTTGATTCCTTTAGTTTCCCAGGCAAGGTTCTGGTATGGCCAGCCAGTG----CTGGCAAGAGAC---GATAACCAGAGGGGATTTCAGCTCCGTCCAGGGGGA--AAGCATT----ATCTTTCTTGGACATCCTTCC-----CAGTG
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=118646.000000
s hg38.chr15_KI270850v1_alt    247156 28 +    430880 GGACTGGCTGCCCTGAGGGTATACAAAC
s panTro5.chrY               25708847 28 -  26350515 GGGCTGGCTGCCCTTAAGGCATAGAAAC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       345700 28 +    378907 GGGCTGGCTGCCCTTAGGGCATACAAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62584631 28 + 169600520 GGGCTGGCTGCCCTTAGGGCGTAGAAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106511903 28 - 171882078 GGGTCGGCTGCCCTTAGGGCGTAGAAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6245862 28 -   6271500 GGGCTGGCTGCCCTTAGGGCGTAGAAAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5138579 28 +   5160157 GTGCTGGCTGCCCTTAGGGCGTAGAAAT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7707451 28 +  58131712 GGGCTGGCTGCCCTTAGGGTGTACAAAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1096485 28 +   1458659 GGGCTGGCTGCCCTTAGGGCGTAGAAAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       307019 28 +   4111199 GGGCCGGCTGCCCTTAGGGCGTAGAAAT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114224628 12 - 132174527 ----------------GGGCACACGAGT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2881279 12 +   3282555 ----------------GGGCGTACGAGT
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1      2753575 12 -   3745603 ----------------GGGCATACAAGT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8725557 28 -  36342412 GTGTTGGCTGCCCTTAGGATGTGCAGGT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56882438 12 + 124595110 ----------------GGACAGAAAAGG
i mm10.chr9                 C 0 I 4
s canFam3.chr30               1732421  4 -  40214260 ---CTGG---------------------
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             198675 28 -   1040364 GTGTTTGCTGCCCTGAGGCCATACAAGT
i dasNov3.JH572216          C 0 C 0
e cebCap1.NW_016107979v1       833744  7 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=1196401.000000
s hg38.chr15_KI270850v1_alt    247184 141 +    430880 CTCCAACTCCTCCAATGGCTGAAGCTACTTCCTCGAGCAGATGGCAGCTGGCTCAGGCTG-GCTAGGGACCAGTGCATGTGAGGTCGGTGCTGGATCA-CCCCATCAAGGCCATCAGCCTGTGCTT-GTT--CTTGGGGTTTGAGG
s panTro5.chrY               25708875 141 -  26350515 CTCCAACTCCTCCAATGGCTGAAGCTACTTCCTCGAGCAGATGGCAGCTGGCTCAGGCTG-GCTAGGGACCAGTGCATGTGAGATCGGTGCTGGATCA-CCCCATCAAGGCCATCAGCCTGTGCTT-GTT--CTTGGGGTTTGAGG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       345728 141 +    378907 CTCCAACTCCTCCAATGGCTGAAGCTACTTCCTCGAGCAGATGGCAGCTGGCTCAGGCTG-GCTAGGGACCAGTGCATGTGAGGCCGGTGCTGGATCA-CCCCATCAAGGCCATCAGCCTGTGCTT-GTT--CTTGGGGTTTGAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62584659 141 + 169600520 CTCCAACTCTTCCAATGGCTGAAGCTACTTCCTGGAACAGATGACAGCTGGCTCAGGCTG-GCCAGGGACCAGCACATGTGAGGCCAGTACTGGATCA-CCCTATCAAGGCCATCAGCCTGTGCTT-GTT--CTTGGGGTTTGAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106511931 141 - 171882078 CTCCAGCTCCTCCAATGGCTGAAGCTACTTCCTGGAACAGATGACAGCTGGCTCAGGCTG-GCCAGGGACCAGCACATGTGAGGCCAGTACTGGATCA-CCCTATCAAGGCCATCAGCCTGTGCTT-GTT--CTTGGGGTTTGAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6245890 141 -   6271500 CTCCAACTCTTCCAATGGCTGAAGCTACTTCCTGGAACAGATGACAGCTGGCTCAGGCTG-GCCAGGGACCAGCACATGTGAGGCCAGTACTGGATCA-CCCTATCAAGGCCATCAGCCTGTGCTT-GTT--CTTGGGGTTTGAGG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5138607 141 +   5160157 CTCCAACTCTTCCAATGGCTGAAGCTACTTCCTCGAACGGATGACAGCTGGCTCAGGCTG-GCCAGGGACCAGCACATGTGAGGCCAGTACTGGATCA-CCCTATCAAGGCCATCAGCCTGTGCTT-GTT--CTTGGGGTTTGAGG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7707479 141 +  58131712 CTCCGACTCCTCCAATGGCTGAAGCTGCTATCTCAGGCCGATGGCAGCTGGCTCAGGCTG-GCCAGGGACGAGCCCATGTGGGGCGGGTGCTGGACCA-CCCCATCAAGGCCGTCAGCCTGTGCTT-GCT--CTCGGGGTTTGAGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1096513 141 +   1458659 CTCCAGCTCCTCCAATGGCTGAAGCTACTTCCTCGAACAGATGACAGCTGACTCAGGCTG-GCCAGGGACCAGCACATGTGAGGCCAGTACTGGATCA-CCCTATCAAGGCCATCAGCCTGTGCTT-GTT--CTTGGGGTTTGAGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       307047 141 +   4111199 CTCCAACTCCTCCAATGGCTGAAGCTACTCCCTCGAACAGATGGCAGCTGGCTTAGGCTG-GCCAGGGACCAGCACATGTGAGGCCAGTACTGGATCA-CCCTGTCAAGGCCATCAGCCTGTGCTT-GTT--CTTGGGGTTTGAGG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114224640 142 - 132174527 CTCCAACTTCTGCAATGGCTGAAGCTACTTCCTGGGGCGGATGGCAGCTGGCTCAGGCCG-GCCAGGGACCAGCACATGTGGGGCCAGGGCCAGACCACCCCTATCAAGGCCATCAGCCTTTGCTC-GCT--CTGGGGGTTTGAGG
i calJac3.chr10             C 0 M 1212
s saiBol1.JH378276            2881291 142 +   3282555 CTCCAACTTCTCCCATGGCTGAAGCTACTTCCTGGGGCGGATGGCAGCTGGCTCAGGCTG-GCCAGGGACCAGCACATGTGGGGCCAGGGCCAGATCACCCCTATCAAGGCTGTCAGCCTCTGCTC-GCT--GTGGGGGTTTGAGG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       833751 142 +   1024465 CTCCGACTTCTCCAATGGCTGAAGCTACTTCCTGGAGCGGATGGCAGCTGGCTCAGGCTG-GCCCGGGACCAGCACATGTGGGGCCAGGGCTAGATCACCCCTATCAAGGCCGTCAGCCTTTGCTC-GCC--CTGGGGGTTTGAGG
i cebCap1.NW_016107979v1    I 7 C 0
s aotNan1.NW_018511953v1      2753587 135 -   3745603 CTCTGACTTCTCCAATGGCTGAAGCTACTTCCTGGGGCAGATGGCAGCTGGCTCAGGCTG-GCCACGGACCAGCACATGTGGGGCCAGGGCCAGATCACCCCTATCAAGGCCGTCA-------CTC-GCT--CTGGGAGTTTGAGG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8725585 142 -  36342412 CTCAGGCTCTTCCAGTGGCTGATGCTGCTGCCTCAGGCAGATATCTGCTGGCTCAGGCTG-CTTGGGGACTAACTTATGTGTGACTAGCACCAGATTGTCCCTATCAAGGCCATCAATCTTTGCTT-GCT--CACATGGTGTAAGG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56882454 131 + 124595110 ----GACCCCTGCAGTGGCTGATGCTGCTCTGTC------ATGTCAGCTGGCTTGGGCTG-GCCGGGGCCCAGCACTAGTGTGACTGATGCCAGAACATCTTTGTCAGAGCCATCAGCCTGACTGT-CCT--CTGCAATTTCAAA-
i mm10.chr9                 I 4 C 0
s canFam3.chr30               1732425 110 -  40214260 -----AATCCTCCGGTGGCAGCCAGTGCCGCCTC-----------------CTCAGGC-----CAGGGACCAGTGCGAATGTGGCTGGCGCCAGGTCATCCCCAGCAAGGCCATCAGCCTACACACAGTG--CTCAGGG-------
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             198703 102 -   1040364 ---------CTCAGATG-------CTGCTTCCTCCTGGTAGTGTCAGCTGGCTCTAGCTGCGCCGGAG---------TGTGTGGCC-----------------ACCAAGGCCATC-GCTGTTGCTT-ACTCACATGGGGTTTAGGG
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=217647.000000
s hg38.chr15_KI270850v1_alt    247325 23 +    430880 GAAACCCAACAGGGATGAATCAC
s panTro5.chrY               25709016 23 -  26350515 GAAACCCAACAGGGATGAATCAC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       345869 23 +    378907 GAAACCCAACAGGGATGAATCAC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62584800 23 + 169600520 GAAACTCAACAGGGATGAATCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106512072 23 - 171882078 GAAACTCAACAGGGATGAATCAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6246031 23 -   6271500 GAAACTCAACAGGGATGAATCAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5138748 23 +   5160157 GAAACTCAACAGGGATGAATCAC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7707620 23 +  58131712 GAAACCCAACAGGGATGAATCAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1096654 23 +   1458659 GAAACTCAACAGGGATGAATCAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       307188 23 +   4111199 GAAACTCAACAGGGATGAATCAT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2881433 23 +   3282555 GAAACCCGTCAGGGACGAGTCAC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       833893 23 +   1024465 GAAACCCAACAGGGATGAATCAC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2753722 23 -   3745603 GAAACCCAACAGGGATGAAACAC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8725727 23 -  36342412 GAAGCCCAACAGAGATGAATCAC
i otoGar3.GL873530          C 0 I 264
s mm10.chr9                  56882585 23 + 124595110 GAGGCCTGACTGGGATGAGTCTC
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1732535 23 -  40214260 GAAGCCCCACAGAGACGAATCAC
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             198805 22 -   1040364 GGAGCAGGAATGGGACGGATCA-
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             114224782 1212 - 132174527 M
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=2064877.000000
s hg38.chr15_KI270850v1_alt    247348 252 +    430880 AGTTTTTAACCTGTGTTTGTCTG-CCCCCC-----AGCCCTGGACATCT-GC-AGGCAAAGTTAAAGTTATATTTGGCTCTTATCACCGCAAAAGGCATAGACCAGAAATTATG--GCATCGGGTTGGAAGTCAGG-G-AGGCTAATTTGGGGAAACTGCCTGGAGGAAGC---AGCAACTCAAAA-GAGGAGGAGTCCCAGTGTGGGACAGAACAGGCCCTGCATAA-GAACCACTAATCCCAGGCAAGCCCAGACATGGCCTTCTGC
s panTro5.chrY               25709039 253 -  26350515 GGTTTTTAACCTGTGTTTGTCTGCCCCCCC-----AGCCCTGGACATCT-GC-AGGCAAAGTCAAAGTTATATCTGGCTCTTGTCACCACAAAAGGCATAGACCAGAAATTATG--GCAGTGGGTTGGAAGTCAGG-G-AGGCTAATTTGGGGAAACTGCCTGGAGGAAGC---AGCAACTCAAAA-GAGGAGGAGTCCCAGTGTGGGACAGAACGGGCCTTGCATAA-GAACCACTAACCCCAGGCAAGCCCAGACATGGCCTTCTGC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       345892 252 +    378907 GGTTTTTAACCTGTGTTTGTCTG-CCCCCC-----AGCCCTGGACATCT-GC-AGGCAAAGTCAAAGTTATATTTGGCTCTTGTCACCACAAAAGGCATAGACCAGAAATTATG--GCAGTGGGTTGGAAGTCAGG-G-AGGCTAATTTGGGGAAACTGCCTGGAGGAAGC---AGCAACTCAAAA-GAGGAGGAATCCCAGTGTGGGACAGAACGGGCCTTGCATAA-GAACCACTAACCCCAGGCAAGCCCAGACATGGCCTTCTGC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62584823 252 + 169600520 GGTTTTTAACCTGTGTTTTTCTG-CCCCCT-----AGCCCTGGACATCT-GC-AGGCAAAGTCAAAGTTGTATTTGGCTCTTATCACCACAAAAGGCATAGACCAGAAATTATG--GCAGCAGGTTGGAAGTCAGG-G-AGGCTGATTTGGGGAAACTGCCTGGAGGAAGC---AGCAACTCAAAA-GAGGAGGAGTCCCAGTGTGGGACAGAACAGGCCTTGCATGG-GAACCACTAACCCCAGGCAACCCCAGACATGGCCTTCTGC
i rheMac8.chr7              C 0 I 6883
s macFas5.chr7              106512095 255 - 171882078 GGTTTTTAACCTGTGTTTTTCTG-CCCCCT-----AGCCCTGGACATCT-GC-AGGCAAAGTCAAAGTTGTATTTGGCTCTTATCACCACAAAAGGCATAGACCAGAAATTATG--GCAGCAGGTTGGAAGTCAGG-G-AGGCTGATTTGGGGAAACTGCCTGGAGGAGGAAGCAGCAACTCAAAA-GAGGAGGAGTCCCAGTGTGGGACAGAACAGGCCTTGCATGG-GAACCACTAACCCCAGGCAACCCCAGACATGGCCTTCTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6246054 252 -   6271500 GGTTTTTAACCTGTGTTTTTCTG-CCCCCT-----AGCCCTGGACATCT-GC-AGGCAAAGTCAAAGTTGTATTTGGCTCTTATCACCACAAAAGGCATAGACCAGAAATTATG--GCAGCAGGTTGGAAGTCAGG-G-AGGCTGATTTGGGGAAACTGCCTGGAGGAAGA---AGCAACTCAAAA-GAGGAAGAGTCCCAGTGTGGGACAGAACAGGCCTTGTATGG-GAACCACTAACCCCAGGCAACCCCAGACATGGCCTTCTGC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5138771 252 +   5160157 GGTTTTTAACCTGTGTTTTTCTG-CCCCCT-----AGCCCTGGACATCT-GC-AGGCAAAGTCAAAGTTGTATTTGGCTCTTATCACCACAAAAGGCATAGACCAGAAATTATG--GCAGCAGGTTGGAAGTCAGG-G-AGGCTGATTCGGGGAAACTGCCTGGAGGAAGC---AGCAACTCAAAA-GAGGAGGAGTCCCAGTGTGGGACAGAACAGGCCTTGCATGG-GAACCACTAACCCCAGGCAACCCCAGACATGGCCTTCTGC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7707643 252 +  58131712 CGTTTTTAACCCGTGTTTGTCTG-TCCCCG-----AGCCCTGGACATCT-GC-AGGCAAAGTCAAAGTTATATTTGGCTCTTATCACCACAAAAGGCATAGACCAGAAATTGTG--GCAGCGGGTTGGAAGTCAGG-G-AGGCTAATCTGGGGAAACTGCCTGGAGGAAGC---AGCAATTCAAAA-GAGGAGGAGTCCCGGTGTGGGACAGAATGGGCCCTGTATAA-GAACCACTAACCCCAGGCAAGCCCAGGCATGGCCTTCTGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1096677 252 +   1458659 GGTTTTTAACCTGTGTTTTTCTG-CCCCCT-----AGCCCTGGACATCT-GC-AGGCAAAGTCAAAGTTGTATTTGGCTCTTATCACCACAAAAGGCATAGACCAGAAATTATG--GCAGCAGGTTGGAAGCCAGG-G-AGGCTGATTTGGGGAAACTGCCTGGAGGAAGC---AGCAACTCAAAA-GAGGAGGAGTCCCAGTGTGGGACAGAACAGGCCTTGCATGG-GAACCACTAACCCCAGGCAACCCCAGACATGGCCTTCTGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       307211 252 +   4111199 GGTTTTTAACCTGTGTTTGTCTG-CCCTCT-----AGCCCTGGACATCT-GC-AGGCAAAGTCAAAGTTGTATTTGGCTCTTATCACCACAAAAGGCATAGACCAGAAATTATG--GCAGCAGGTTGGAAGTCAGG-G-AGGCTGATTTGGGGAAACTGCCTGGAGGAAGC---AGCAACTCAAAA-GAGGAGGAGTCCCAGTGTGGGACAGAACGGGCCTTGCATGG-GAACCACTAACCCCAGGCAACCCCAGACATGGCCTTCTGC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2881456 250 +   3282555 CATTTTTAACCTGTGTTTGTCCG-CCCTGC-----AGCCCTGGACATCT-GC-AGGCAAAGTCAAAGTTGTCTTTGGTTCTTATCACCACAAAAGGCATGGACCGGAAGTTGTG--GCAGCAGGTGGGAAGTCAGG-G-AGGCTAATCTGGGGAGACTGCCTGGAGGAAGC---AGCAACTC--TA-GAGGAGGAGTCCCGGTGTGGGACAGAACGGGACCCACGTAG-GAATCACTGACCCCAGGCAAGCCCAGCCCTGGCCTTCTGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       833916 250 +   1024465 CATTTTTAACCTGTGTTTGCCTG-CCCTGC-----AGCCCTGGACATCT-GT-AGGCAAAGTCAAAGTTGTATTTGGTTCTTATCACCACAAAAGGCATGGACCGGAAGTTGTG--GCAGCAGGTTGGAAGTCAGG-G-AGGCTAATTTGGGGAGACTGCCTGGAGGAAAC---AGCAACTC--TA-GAGGAGGAGTCCTGGTGTGGGACAGAACGGGACCCACACAG-GAATCACTGACCCCAGGCAAGCCCAGCCCTGGCCTTCTGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2753745 249 -   3745603 CATTTTTAACCTGTGTTTGTCTG-TCCTGC-----AGCCCTGGACATCT-GC-AGGCAAAGTCAAAGTTGTATTTGGTTCTTATCACCACAAAAGGCATGGACCGGAAGTTGTG--GCAGCAGGTTGGAAGTCAGG-G-AGGCTAATCTGGGGAGACTGCCTGGAGGAAGC---AGCAACTC--TA-GAGGAGGAGTCCCGGTGTGGGACAGAACGGGA-CCGCACGG-GAATCACTGACCCCAGGCAAGCCCAGCCCTGGCCTTCTGC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8726014 228 -  36342412 CCTTTTTAATCCATTTTTGTCCG-TCCCTC-----AGCCCTGGACATCT-GT-GAACAAAGTCAAAGTTATATTTGGCTCCAATCACTGCAAAAGGAATGGACCAGAACTTGTG--GCTGCAGGCTGGAGGTTGAG-G--------TTTGGGGAAACTGCCCGGAGGATGT---GGCAACTTAAAAGGAGGAGGTTCCCCAGAATGGGACAGATGGAGCCCTCCATAG--------TGACTCTGGACAATCTCAGATA-----------
i otoGar3.GL873530          I 264 C 0
s mm10.chr9                  56882608 212 + 124595110 --CTTTTCTCCTGCCATCT-----TTCCCC-----AACACTGGATATCT-GC-ATGC--AGTCGA----------GGTTCTAACCACCACAAGA---ATGGGTCAGAAATGGTGGAGAAACTGCTGGAGACTGAAG-A-AAGCTAATATTAGGGAACTGCCTGAAGGAGGA---GGT-------------------TCCCACTGTGGTCCAAAGTGG--CCTGCACAG-TGCTCACCAACCCTGGGTAGAC-CGTATCTGTCCTGATGC
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1732558 237 -  40214260 -CTTTTTAACCCATTCCAGTCTC-CCGTCTTTACGAGTCCCGGACCTCTAGG-GGACCGAGTCAAAGTTATAATTGGCCCTAATCTCTGCAAAAGGAACAAACCAGAAGTTGTG--GCAGCTGGTCTGAGGTCAAGAG-AGGCTAATTTGGGGAAACTGTCTGGAGGATGT---GGCCTCTTAAAAAGAGGTAGTGTCCTGGGGTGGGACCAAAGGGGCCCTGCACAG-CCACCACCAGCCACGGAC----------------------
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             198827 230 -   1040364 GCTTTTTAACTCCTTCCTGTCTT-CCTCCG-----AGGCCTGGACATCT-ACGGGGCAGAGTCAAGGTTGTATTTGGCCTTAACTTCTGCAAAAAGAATGGACCA-----------GCAGCAGATTGGAGGACAAG-GAAGGCTAATTTGGGGAAACGGCCTGAAGGAGGT---GGCAGCTTAAAA-GGAGA------CCAGTGTGGGACAAAAAGGGCCCTGCATAGTAAACCACTGCCCCTGGGCAAAC----------CCTGCTGC
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             114224782 1212 - 132174527 M
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=3899897.000000
s hg38.chr15_KI270850v1_alt    247600 474 +    430880 CTGGGGAGGCCCTCTTTGGCCTGCTCAGCAGACCCTCAGCCCCTTCTAGGCCCTGTCTT------CAGCCTCAGACTGAGTGGTGGCCTGGGGAGGTTGGGAGCTGAGCTGTTCTCATCCCTGGTTCCTTGGCCACG-GTGGAAACAATGGGGCCGGATCTGACTGCTCAGCGGGGACTGTGAATAGCTCTCTAGCAGGAAGCAACAGCAGGGGTAGTGGAGGAAGTGTGGGCCCACTTT-G-GTTTGACACTGCATATGGTCCCCATCTGGCCTGAGAGCC-TT--TACTCCTTGGCAAACTCAGGCCAATAAGCTCCTGC------CCCCACCCTCAATGGCAGCTGGAAGAATGGCCTGAGGGAGAAGCAGGGATAGGTGGGCTGCA----C----TGACATCACCCCCAGATCCCAGCCGTGGCCCCAGCCAACCCATGGAGGTGGGGCATGG-CACGGCAGG-----TGCTGCACAGGAGCCCAAGCACAAGGGCACTTAG
s panTro5.chrY               25709292 474 -  26350515 CTGGGGAGGCCCTCTTTGGCCTGCCCAGCAGACCCTCAGCCCCTCCTAGGCCCTGTCTT------CAGCCTCAGACTGAGTGGCGGCCTGGGGAAGTTGGGAGCTCAGCTGTTCTCATCCCTGGTTCCTTGGCCAAG-GTGGAAACAATGGGGCCGGATCCGACTGCCCAGTGGGGACTGTGAATAGCTCTCTAGCAGGAAGCAACAGCAGGGGTAATGGAGGAAGTGTGGGCCCACTTT-G-GTTTGACACTGCATATGGTCCCCATCTGGCCTCAGAGCC-TT--TACTCCTTGGCAAACTCAGGCCAATAAGCTCCAGC------CCCCACCCTCAATGGCAGCTGGAAGAATGGCCTGAGGGAGAAGTGGGGATAGGTGGGCCACA----C----TGACATCACCCCCAGATCCCAGCCGTGGCCCCAGCCAATGCATGGAGGCGAGGCATGG-CACGGCAGG-----TGCTGCACAGGAGCCCAAGCACAAGGGCACTTAG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       346144 474 +    378907 CTGGGGAGGCCCTCTTTGGCCTGCCCAGCAGACCCTCAGCCCCTCCTAGGCCCTGTCTT------CAGCCTCAGACTGAGTGGTGGCCTGGGGAAGTTGGGAGCTCAGCTGTTCTCATCCCTGGTTCCTTGGCCACG-GTGGAAACCATGGGGCTGGATCTGACTGCTCAGCGGGGACTGTGAATAGCTCTCCAGCAGGAAGCAACAGCAGGGGTAATGGAGGAAGTGTGGGCCCACTTT-G-GTTTGACACTGCATATGGTCCCCATCTGGCCTCAGAGCC-TT--TACTCCTTGGCAAACTCAGGCCAATAAGCTCCCGC------CCCCACCCTCAATGGCAGCTGGAAGAATGGCCTGAGGGAGAAGTGGGGATAGGTGGGCCACA----C----TGACACCACCCCCAGATCCCAGCCGTGGCCCCAGCCAATGCATGGAGGTGAGGCATGG-CACGGCAGG-----TGCTGCACAGGAGCCCAAGCACAAGGGCACTTAG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62591958 474 + 169600520 CTGGTGAGGCCTTCTCTGGCCTGCCCTGCAGACCCTCAGCCCCTCCTAGGCCCTGTCTT------CAGCCTCAGCCTGAGTGGTGGCCTGGGGCAGTTGGGAGCTCAGCTGTTCTCATTCCTGGTTCTTTGGCCATG-GTGGAAACAATGGGGCTGGATCTGACTGCTCAGCAGGGACTGTGAATAGCTCTCCAGCAGAAAGCAGTAGCAGGGTTAATGGAGGAAGTGTGGGCCCACTTT-G-GTTTGACACTGCATATGGTCCCCATCTGGCCTCAGAGCC-TT--TGCTCCTTGGCAAACTGAGGCCAATAAGCTCCCAC------CCCCACCCTCAATGGCAGCTGAAAGAATGACCTGATAGAGGAGCGGGGATAGGTGGGCTCCA----C----TGAAACCATCCCCAGATCCCAGCCATGGCCCCAGCCAATCCATGGAGGCAGGGCATGG-CACGGCAGG-----TGCTGCACAGGAGCCCAAGCACAAGGGCACTTAG
i rheMac8.chr7              I 6883 C 0
s macFas5.chr7              106512350 474 - 171882078 CTGGTGAGGCCTTCTCTGGCCTGCCCTGCAGACCCTCAGCCCCTCCTAGGCCCTGTCTT------CAGCCTCAGCCTGAGTGGTGGCCTGGGGCAGTTGGGAGCTCAGCTGTTCTCATTCCTGGTTCTTTGGCCATG-GTGGAAACAATGGGGCTGGATCTGACTGCTCAGCAGGGACTGTGAATAGCTCTCCAGCAGAAAGCAGTAGCAGGGTTAATGGAGGAAGTGTGGGCCCACTTT-G-GTTTGACACTGCATATGGTCCCCATCTGGCCTCAGAGCC-TT--TGCTCCTTGGCAAACTGAGGCCAATAAGCTCCCAC------CCCCACCCTCAATGGCAGCTGAAAGAATGACCTGATAGAGGAGCGGGGATAGGTGGGCTCCA----C----TGAAACCATCCCCAGATCCCAGCCATGGCCCCAGCCAATCCATGGAGGCAGGGCATGG-CACGGCAGG-----TGCTGCACAGGAGCCCAAGCACAAGGGCACTTAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6246306 474 -   6271500 CTGGTGAGGCCTTCTCTGGCCTGCCCTGCAGACCCTCAGCCCCTCCTAGGCCCTGTCTT------CAGCCTCAGCCTGAGTGGTGGCCTGGGGCAGTTGGGAGCTCAGCTGTTCTCATTCCTGGTTCTTTGGCCATG-GTGGAAACAATGGGGCTGGATCTGGCTGCTCAGCAGCGACTGTGAATAGCTCTCCAGCAGAAAGCAGTAGCAGGGTTAATGGAGGAAGTGTGGGCCCACTTT-G-GTTTGACACTGCATATGGTCCCCATCTGGCCTCAGAGCC-TT--TGCTCCTTGGCAAACTGAGGCCAATAAGCTCCCGC------CCCCACCCTCAATGGCAGCTGAAAGAATGACCTGATAGAGGAGCGGGGATAGGTGGGCTCCA----C----TGAAACCATCCCCAGATCCCAGCCATGGCCCCAGCCAATCCATGGAGGCAGGGCATGG-CACGGCAGG-----TGCTGCACAGGAGCCCAAGCACAAGGGCACTTAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5139023 474 +   5160157 CTGGTGAGGCCTTCTCTGGCCTGCCCTGCAGACCCTCAGCCCCTCCTAGGCCTTGTCTT------CAGCCTCAGCCTGAGTGGTGGCCTGCGGCAGTTGGGAGCTCAGCTGTTCTCATTCCTGGTTCCTTGGCCATG-GTGGAGACAATGGGGCTGGATCTGGCTGCTCAGCGGCGACTGTGAATAGCTCTCCAGCAGAAAGCAGTAGCAGGGTTAATGGAGGAAGTATGGGCCCACTTT-G-GTTTGACACTGCATATGGTCCCCATCTGGCCTCAGAGCC-TT--TGCTCCTTGGCAAACTGAGGCCAATAAGCTGCCAC------CCCCACCCTCAATGGCAGCTGAAAGAATGACCTGATAGAGGAGCGGGGATAGGTGGGCTCCA----C----TGAAACCATCCCCAGATCCCAGCCATGGCCCCAGCGAATCCATGGAGGCAGGGCATGG-CACGGCAGG-----TGCTGCACAGGAGCCCAAGCACAAGGGCACTTAG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7707895 473 +  58131712 CTGGTGAGGCCCTCTTTGGCCTGCCCAGCAGACCCTCAGCCGTTCCCAGGCCCTGTCTT------CAGCCTCCGCCTGCGTGGTGGCCTGGGGAAGTTGGGAGCTCAGCTGTTCTCATCCCTGGTTCCTTGGCCATG-GTGGAAACAATGGGGCTGGATCTGACTGCTCATCGGGGACTGTGAATAGCTCTCCAGCAGGAAGCAATAGCAGGG-TAATGGAGGAAGTGTGGGCCCACTTT-G-GTTTGACCCTACACATGGTCTCCATCTGGCCTCAGAGCC-TT--TGCTCCTTGGCAGACTCAGGCTAATAAGCTCCCGC------CCTCACCCTCAGTGGCAGGTGGAAGAATGGCCTGAGAGAGAACTGGGGATAGGTGGGCCATG----C----TGACACCTCCACCAGATCCCAGCCGTGGCCCCAGCCAACCCATGGATGCGGGGCATGG-CACGGCGGG-----CACTGCACAGAAGCCCAAGCACAAGGGCACTTAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1096929 474 +   1458659 CTGGTGAGGCCTTCTCTGGCCTGCCCTGCAGACCCTCAGCCCCTCCTAGGCCCTGTCTT------CTGCCTCAGCCTGAGTGGTGGCCTGGGGCAGTTGGGAGCCCAGCTGTTCTCATTCCTGGTTCCTTGGCCATG-GTGGAAACAATGGGGCTGGATCTGGCTACTCAGCTGCGACTGTGAATAGCTCTCTAGCAGAAAGCAGTAGCAGGGTTAATGGAGGAAGTGTGGGCCCACTTT-G-GCTTGACACTGCATATGGTCCCCATCTGGCCTCAGAGCC-TT--TGCTCCTTGGCAAACTGAGGCCAATAAGCTGCCGC------CCCCACCCTCAATGGCAGCTGAAAGAATGACCTGATAGAGGAGCGGGGATAGGTGGGCTCCA----C----TGAAATCATCCCCAGATCCCAGCCATGGCCCCAGCCAATCCATGGAGGCAGGGCATGG-CACGGCAGG-----TGCTGCACAAGAGCCCAAGCACAAGGGCACTTAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       307463 473 +   4111199 CTAGTGAGACCCTCTCTGGCCTGCCCTGCAGACCCTCAGCCCCTCCTAGGCCCTGTCTT------CAGCCTCAGCCTGAGTGGTGGCCTGGGGCAGTTGGGAGCTCAGCTGTTCTCATTCCTGGTTCCTTGGCCATG-GTGGAAACAATAGGGCTGGATCTGACTGCTCAGCGGGGACTGTGAATAGCTCTTCAGCAGAAAGCAGTAGCAGGGTTAATGGAGGAAGTGTGGGCCCACTTT-G-GTTTGACACTGCATATGGTCCCCATCTGGCCTCAGAGCC-TT--TGCTCCTTGGCAAACGGAGGCCAATAAGCTCCCGC------CCCCACCCTCAATGGCAGCTGAAAGAATGACCTGATAGAGAAGTGGGGATAGGTGGGCTGCA----C----TGAAACCATCCCCAGATCCCAGCCATGG-CCCAGCCAATCCATGGAGGCAGGGCATGG-CACGGCAGG-----TGCTGCACAGGAGCCCAAGCACAAGGGCACTTAG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2881706 468 +   3282555 CTGGGGAGGCCCTCTTTGGCCTGCCCAGCAGCCCCTCAGCCCCTCCCGGGTCCTGTCTT------CAGCCTCGGCTTGAGTGGTGGCCTGGGGAAGTTGAGGACTCAGCTGTTCTCATCCCTGATTCCTCGGCCACG-GTGGAAACAATGGGGCCGGATCTGACTGCTCAGCGGGGAGTGTGACTGGCCCTCCAGCAGGAAGCAATAGC-GGGGTCATGGAGGAAGTGTGGGTCCACTTT-G-GTCTGACACTGCACATGGTCTCCATCTGGCCTCAGAGCCTTT--TGCTCCTTGGCAGACTCAGGCCAGTAAACTCCCGC------CCCCACCCTCAATGGCAGCTGGAAGAATGGCCTGAGAGAGAAGCGAGAATAGATGGGCCACA----C----TGACACCACCACCAGATCCCAGCTGTGGCCTCGGCCAACCCGTGGAGGTGGGGCATGG-CACGGCGAG-----CGCAGCACAGG------AGCCCACGGACATGTAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       834166 460 +   1024465 CTGGGGAGGCTCTCTTTGGCCTGCCCAGCAGCCCCTCAGCCCCTCCCAGGCCCTGTCTT------CAGCCTCAGCTTGAGTGGTGGCCTGGGGAAGTTGGGAACTCAGCTGTTCTCATCCCTGATTCCTTGGCCACG-GTGGAAACAATGGGGCCGGATCTGACTGCTCATCGGGGAGTGTGAATAGCTCTCCAGCAGGAAGCAATAGCTGGGGTCATGGAGGAAGTTTGGGTCCACTTT-G-GTCTGACACTGCACATGGTCTCCATCTGGCCTCACAGCC-TT--TGCTCCTTGGCAGACTCAGGCCAATAAACTCCCGC------CCCCACCCTCAATGGCGGCTGGAAGAATGGCTTGAGAGAGAAGCGGGAATAGATGGGCCATG----C----TGACACCACCACCAGATCCCAGCTGTGGCCTCGGCCAACCCGTGGAGGTGGGGCAT-G-CACGGTGAG-----CCCA-------------AGCACAAGGACATGAAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2753994 474 -   3745603 CTGGGGAGGCCCTCTTTGGCCTGCCCAGCAGCCCTTCAGCCCCTCCCAGGCCCTGTCTT------CAGCCTCAGCTTGAGTGGTTGCCTGGGGAAGTTGGGAACTCAGCTGTTCTCATCCCTGATTCCTTGGCCGCA-GTGGAAACAATGGGGCCGGATCTGACTGCTCATCGGGGAGTGTGAATAGCTCTCCAGCAGGAAGCTATAGCGGGGGTCATGGAGGAAGTTTGAGCCCACTTT-G-GTCTGACACTGCACATGGTCTCCATCTGGCCTCAGAGCC-TT--TGCTCCTTGGCAGACTCAGGCCAATAAACTCCCGC------CCCCACCCTCACTGGCAGCTGGAAGAATGGCCTGAGAGAGAAGCGGGAATAGATGGGCCACG----C----TGACACCACCACCAGATCCCAGCTGTGGCCTCGGCCAACCCGTGGAGGTGGGGCATGG-CACGGCAAG-----CGCTGCACAGGAGCCCAAGCGCAAGGACATGTAT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8726242 462 -  36342412 -----------------GGCCTGCCCAGCAGAGCCTCCCCCCTTCCCAGGCCCTGTCTT------CAGCCTCAGCCCAAGGCTTGGCCTGGGGGAAGTGGGAGCTCAGATGTTCTCATCCCCAGCTTCTTGGCCATG-ATAGAAACAATGAGACCGGATCTGAATGCTCACCCGGGACTGTTAATAGCACCACGGCAGGAAGCAATAGCAGGGGTAATGGAGGAAGTTTTGGCCCATTTTGG-GTCTGACACTGCACATGCTTACCATCTGGCCTCAGAGCC-TT--TGCTCTTTGGCAGATGTAGACCAATATACTGTCAC------CCCCTCCCCCAAAAGCAGCTGGGAGAATGGCCTGAGAGAGGAAGTGGAGGGGGTGGGCTGC-----C----CAACAGCACTACCAGGCACCAACCATGGCCACAGCCAACCCATGGAAGTCGGGCATGG-CATGGCATGGCCATCATTGCCTGGGAGCCTAAGCATAAGGGCAGTTAA
i otoGar3.GL873530          C 0 I 138
s mm10.chr9                  56882820 420 + 124595110 CTGAGGAGACCCTC-------------GCAGGCCTGTAGTGCGTCCCCAGCCTTGTATTTGGAGACATCCCTGGCTTGGGT-------TAGGGAAG--GGGATCTCTGCTGCTGTCTTCCCTGGCTCCTTAGGCATGTTTGGAAACAGAGAGGCCGGATGTGAGTACTCACCAGGGACCCGTGGTGGTGCTGAGGCAGGAAGCAATTGC-GGAGTGGTGGAGCACAGTTTGGCCGGCTTT-GAGTCTGACACCGCACGTGCTTCCCATC-GGCCTGGGAGCC-TT--TGCTCCTTGGCAGGCTCTGAGCAATAAACGGCCCCACCCCACCCCGTCCCTACAGGCA-CTAAGAAAAT--------AGAGAA---GAAATGACCTGCCTGCA---------TACCACCACCATCAGGCTCCA----------CAGCAAA-ACACAGAGATAAAGTGCGGTCGTGGCAAG---------------GAGCCCA--CCCTAG---------
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1732795 432 -  40214260 ----GGAGGCCCTC--TGGCCCTCTCAGCAAACCTCCCACCC-TCCCAGGCCTTGTCTC------TAGCTACAGACCCAG-----GCTGGGAAAAG--------CCAGCTGTAGTCGGCTATGGCTCCCCAGCCATC-GTGGGAACAACAGGGCCGGATCTGACTGCCCCCCAGGGACAATCAGCAGCCTTGCGGCAGGAAGCAATAC--GGCGTGATGCAGGAAGCTGGGGCCCATTTG-G-GGTC----CAGTACGTGGTCTCCATCTGGCCTCAGCGCC-TT--CGCTCTTTGGTGGACTCGGGCTGGCGA--CTGCAC------CCTTACTC-CAAAGACAGCTGGG-------------AGAGAAGTGGGGACGGGTGGGCTGCCTGTTT----CAGCACCACCGCCAGGCCCCGGCCGTGGCCCCAGCCTACCCACAGAGGGAGGGCATGG-CATGGAAAG-----CGTTGTCCGAGAACCAAAGCATG-GGGCACT---
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             199057 454 -   1040364 CCTGAGAGACCCTCTCTGCCCTGCCTAGCAGGCCCTCAGCCCCTCCCAGGCCCTGTCTC------CAGTCTTAGGC----------CCTGGGGGAGGCAGGGGCTCAGC-ATTCTCATCCTTGGCTCCTTGGCCCTG-ATGGAAACAATGGGGCCGGATCTGACCACTCATGGGGGACCATTCATAACTCTACAGCTGGAAGCAATTT--GGACCATTGGAGGAAGTTGTGGCACATTCTGG-GTCCAGCACTGCACATGTTCTCCATCGGGCCTCAGAGCC-TTTCTGCTCC----CACGTTCAGGCCGACCAGCTGCCAG------CCTCATTCCTGAGAGCAGCTGGGTGCACGGCTGG--AGAGAAGTGAGGGTGGATGGGCTGCC----CGTCTCCACACAAACTCTGGGCACCAGCCATGGCTCCCGCCAACCCATGGAGGTT-GGCATGG-CATGGCAAG-----GGCTGCTCAGGAGC-------CAAGTGCAGTTAG
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             114224782 1212 - 132174527 M
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=3012833.000000
s hg38.chr15_KI270850v1_alt    248074 377 +    430880 GAGAAGGAATCTGAGCAGGGATCGATCTGGCCTGGTGGTGATTCTCCAGAAACTCCATTCCTCAGGGCTGTGACCACCAAGCCAGGTGATCAGGCCAGTGAT-GTTTCCCTTTGGGCCAGGTCGGGGAG---CCAGACCTGGGAGGGAGACTCCTCTGGGGCCCAGGGGAGGTGAGTCAGAGCTGGCAGAGGCCTCTGGCTCCAGGAACCTCCAAGGAGGAGACCTGAGTTGCTGGGAATTTCTGGGTCTGACCTCCTGCCAAGTCAAGGTCTGGGCTGGACACAAGGTGAGGCTGTGCCTTCT---GGTGCCAGGACC----AAGGAAATGCTGGGATCTGGGCAGTGCTCAGA-GGCAGCACCGTATGGCAGAACCATGAGGGTGCA
s panTro5.chrY               25709766 377 -  26350515 GAGAAGGAATCTGAGCAGGGATCAATCTGGCCTGGGGGTGATTCTCCAGAAACTCCATTCCTCAGGGCTGTGACCACCAAGCCAGGTGATCAGACCAGTGAT-GTTTCCCTTTCAGCCAGGTCGGGGAG---CCAGACCTGGGAGGGAGACTCCCCTGGGGCCCAGGGGATGCAAGTCAGAGCTGGCAGAGGCCTCTGGCTCCAGGAACCTCCAAGGAGGAGACCTGAGTTGCTGCAAATTTCTGGGTCTGACCTCCTGCAAAGTCAAGGTCTGGGCTGGACACAAGGTGAGGCTGTGCCTTCT---GGTGCCAGGACC----AAGGAAATGTGGGGATCTGGGCAGTGCTCAGA-GGCAGCATCATATAGCAGAACCATGAGGGTGCA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       346618 375 +    378907 GAGAAGGAATCTGAGCAGGGATCAATCTGGCCTGGGGGTGATTCTCCAGAAACTCCATTCCTCAGGGCTGTGACCACCAAGCCAGGTGATCAGGCCAGTGAT-GTTTCCCTTTGGGCCAGGTCGGGGAG---TCAGACCTGGGAGGGAGACTCCTCT-GGGCCCAGGGGAGGTGAGTCAGAGCTGGCAGAGGCCTCTGGCTCCAGGAACCTCCAAGGAAGAGACCTGAGTTGCTGGGAATTTCTGGGTCTGACCTCCTGCCAAGTCAAGGTCTGGGCTGGACACAAGGTGAGGCTGTGCCTTCT---AGTGCCA-GACC----AAGGAAATGCTGGGATCTGGGCAGTGCTCAGA-GGCAGCATCATATAGCAGAACCATGAGGGTGCA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62592432 377 + 169600520 GAGAAGGAATATCAGCAGGAATCAGTCTGGACTGGGGGTGATTCTCCAGAAACTCCATTCCTCGGGGCTGTGACCACCAAGCCAGGTGATCAGGCCAGTGAT-GTTTCCCTTTGGGCTGGGTCAGGGAG---CCAGACCTGGGAGGGAGACTCCTCTGGGGCCCAGGGGAGGTGAGTCAGAGCTGGCGGAGGCCTCTGGCTCCAGGAATCTCTAAGGAGGAGACCTGAGTTGCTGGGAATTTCTGGGTCTGACCTCCTGCAGAGTCAAGGTCTGGACTGGATACAAGGTGAGGCTGTGCCTTCT---GGTGCCAGGACC----AAGGAAATGCTGGGATCTGGGCAGTGCTCAGA-GGTAGCACCATATAGCAGAACCATGAGGGTGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106512824 377 - 171882078 GAGAAGGAATATCAGCAGGAATCAGTCTGGACTGGGGGTGATTCTCCAGAAACTCCATTCCTCGGGGCTGTGACCACCAAGCCAGGTGATCAGGCCAGTGAT-GTTTCCCTTTGGGCTGGGTCAGGGAG---CCAGACCTGGGAGGGAGACTCCTCTGGGGCCCAGGGGAGGTGAGTCAGAGCTGGCGGAGGCCTCTGGCTCCAGGAATCTCTAAGGAGGAGACCTGAGTTGCTGGGAATTTCTGGGTCTGACCTCCTGCAGAGTCAAGGTCTGGACTGGATACAAGGTGAGGCTGTGCCTTCT---GGTGCCAGGACC----AAGGAAATGCTGGGATCTGGGCAGTGCTCAGA-GGTAGCACCATATAGCAGAACCATGAGGGTGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6246780 376 -   6271500 GAGAAGGAATCTGAGCAGGGATCAGTCTGGACTGGGGGTGATTCTCCAGAAACTCCATTCCTTGGGGCTGAG-CCACCAAGCCAGGTGATCAGGCCAGTGAT-GTTTCCCTTTGGGCTGGGTCAGGGAG---CCAGACCTGGGAGGGAGACTCCTCTGGGGCCCAGGGGAGGTGAGTCAGAGCTGGCGGAGGCCTCTGGCTCCAGGAATCTCTAAGGAGGAGACCTGAGTTGCTGGGAATTTCTGGGTCTGACCTCCTGCAAAGTCAAGGTCTGGACTGGACACAAGGTGAGGCTGTGCCTTCT---GGTGCCAGGACC----AAGGAAATGCTGGGATCTGGGCAGTGCTCAGA-GGCAGCACCATATAGCAGAACCATGAGGGTGCA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5139497 377 +   5160157 GAGAAGGAATATCAGCAGGAATCAGCCTGGACTGGGGGTGATTCTCCAGAAACTCCATTCCTCGGGGCTGTGACCACCAAGCCAGGTGATCAGGCCAGTGAT-GTTTCCCTTTGGGCTGGGTCAGGGAG---CCAGACCTGAGAGGGAGACTCCTCTGGGGCCCAGGGGAGGTGAGTCAGAGCTGGCGGAGGCCTCTGGCTCCAGGAATCTCTAAGGAGGAGACCTGAGTTGCTGGGAATTTCTGGGTCTGACCTCCTGCAAAGTCAAGGTCTGGACTGGACACAAGGTGAGGCTGTGCCTTCT---GGTGCCAGGACC----AAGGAAATGCTGGGATCTGGGCAGTGCTCAGA-GGTAGCACCATATAGCAGAACCATGAGGGTGCA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7708368 375 +  58131712 GAGAAGGAATCTGAGCAGGGATCAGTCTGGACTGGGGATGATTCTCCAGAAACTCCATTCCTCGGGGCTGTGACCACCAAGCCAGGTGATCAGGCCAGTGAT-GTTTCCCTTTGAG-GGGGTAGGGGAC---CCAGACCCGGGAGGAAGACTCCTCTGGGGCCCAGGGGAGGTGAGTCAGAGCTGGCAATGGCCTCCGGCTCCAGGAACCTCCAAGGAGGAGACCTGAGTTGCTGGGAATTTCTGGGTCTGACCTCCTGCAAAGTCAAGGTCTGG-CTGGACACAAGGTGAGGCTGTGCCTTCT---GGTGCCAGGACG----AAGAAGATGCTGGGATCCAGACAGTACTCACA-GACAGCACCATATAGCAGAACCATGAGGGTGCG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1097403 377 +   1458659 GAGAAGGAATATGAGCAGGAATCAGCCTAGACTGGGGGTGATTCTCCAGAAACTCCATTCCTCGGGGCTGTGACCACCAAGCCAGGTGATCAGGCCAGTGAT-GTTTCCCTTTGGGCTGGGTCAGGGAG---CCAGACCTGGGAGGGAGACTCCTCTGGGGCCCAGGGGAGGTGAGTCAGAGCTGGCGGAGGCCTCTGGCTCCAGGAATCTCTAAGGAGGAGACCTGAGTTGCTGGGAATTTCTGGGTCTGACCTCCTGCAAAGTCAAGGTCTGGACTGGACACAAGGTGAGGCTGTGCCTTCT---GGTGCCAGGACC----AAGGAAATGCTGGGATCTGGGCAGTGCTCAGA-GGTAGCACCATATAGCAGAACCATGAGGGTGCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       307936 377 +   4111199 GAGAAGGAATATCAGCAGGAATCTGTCTGGACTGGGGGTGATTCTCCAGAAACTCCATTCCTCGGGGCTGTGACCACCAAGCCAGGTGATCAGGCCAGTGAT-GTTTCCCTTTGGGCTGGGTCAGGGAG---CCAGACCTGGGAGGGAGACTCCTCTGGGGCCCAGGGGAGGTGAGTCAGAGCTGGCGGAGGCCTCTGGCTCCAGGAATCTCTAAGGAGGAGAACTGAGTTGCTGGGAATTTCTGGGTCTGACCTCCTGCAAAGTCAAGATCTGGACTGGACACAAGGTGAGGCTGTGCCTTCT---GGTGCCAGGACC----AAGGAAATGCTGGGATCTGGGCAGTGCTCAGA-GGCAGCACCATATAGCAGAACCATGAGGGTGCA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2882174 381 +   3282555 GAGAAGGAATCTGAGCAGGGATCAGTCTGGATTGGAGGTGGTTCTTTAGAAACTCCATTCCTCGGGGCTGTGACCACCAAGCCAGGTGATTAGGCCAGTGAT-GTTTTCCTTTGGAGCCGGTAGGGGAG---CCAGACGTGGGAGAGAGACGCCGCTGGGGCCCAGGGGAGGTGAGTCAGAGCTGGCAGAAGCCTCTGGCTCCAGGAACCTCCAAGGAGGAGACCTGAGTTGCTGGGAATTTCTGGGTCTGGCCTCCTGCAAAGTCAAGGTCTGGGCTGGACACAAGGCGAGGCTGTGCCTTCTTCCGGTGCCAGGACCGAGAAAGAAGATGCTGGGATCTGGGCAGTGCTCAGA-GGCAGCACCATATA---GAACCATGAGGGCGCG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       834626 384 +   1024465 GAGAAGGAATCTGAGCAGGGATCAGTCTGGATTGGAGGTGGTTCTTTAGAAACTCCATTCCTCGGGGCTGTGACCACCAAGCCAGGTGATTAGGCCAGTGAT-GTTTTCCTTTGGAGCCGGTAGGGGAG---CCAGACGTGGGAGAGAGACGCCGCTGGGGCCCAGGGGAGGTGAGTCAGAGCTGGCAGAAACCTCTGGCTCCAGGAGCCTCCAAGGAGGAGACCTGAGTTGCTGGGAATTTCTGGGTCTGGCCTCCTGCAAAGTCAAGGTCTGGGCTGGACACAAGGCGAGTCTGTGCCTTCTTCCGGTGCCAGGACCGAGAAAGAAGATGCTGGGATCTGGGCAGTGCTCAGA-GGCAGCACCATACAGGGGAACCATGAGGGTGCG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2754468 384 -   3745603 GAGAAGGAATTTGAGCAGGGATCAGTCTGGATTGGAGGTGGTTCTTTAGAAACTCCATTCCTCGGGGCTGTGACCACCAAGCCAGGTGATTAGGCCAGTGAT-GTTTTCCTTTGGAGCGGGTAGGGGAG---CCAGACGTGGGAGAGAGACGCCGCTGGGGCCCAGGGGAGGTGAGTCAGCGCTGGCAGGAGCCTCTGGCTCCAGGAACCTCCAAGGAGGAGACCTGAGTTGCTGGGAATTTCTGGGTCTGGCCTCCTGCAAAGTCAAGGTCTGGGCTGGACACAAGGCGAGGCTGTGCCTTCTTCCGGTGCCAGGACTGAGAAAGAAGATGCTGGGATCTGGGCAGTGCTCAGA-GGCAGCACCATATAGGAAAACCGTGAGCGTGCG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8726842 350 -  36342412 GAAAAGGAATTTGAGCAGGAATCAATTCAATTTGAG---------TCAGGGGCG--GTTCCTGGGGGCTGTCACCATCAAGCTACGTGATCAGGCCAGTGATGGTTTCCCTTTGGACCAGA--GAAGCC---CCAGATCTAAGATAGAGTTTCCTCTTGGA----------GAGAGCCAGAGCTGGCAGAGGCCTCTGGCCTCAGGATTCTCCAAAGGGGACACATGAGTTGCTGGAAATTTCTGGGTCTGGCCTCCTTCCAACTCAAGGTCTGAG-GGGACTTGAGGTGAGGCTGTGCCTTCT---GGGTCCAGGACC----AAACAGAGGCTGGGGTCTGGCTCATGTTCACA-GGCAGCACCATGCAGGAGAACCATTGAGG----
i otoGar3.GL873530          I 138 C 0
s mm10.chr9                  56883240 208 + 124595110 GAGAA-GACTGTGGTCAGGGATCAGCCTTCATTGTGAGAGT--------------------------------CCCCCCCACCAGATGATCATGACAA-GAT---------------------AGGGAGAGACCAGATCCAGGATGGACATT-CGCTGGGGCCCAAAGG--------------TGGCGGGAACCTGTGGCTTCAGGAACCC-----AAGCAAACTTGAATAG-TGGGAATCTTAA----CGAGCCCCT--------------------------------AGGCTGTGCCACAT---AGAGCCA---------TGGGGCATG---------------------------------------------------------
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1733227 334 -  40214260 ---------------CAGGCATCCGTTTGGGGTAGGGATGATCCTCCTGGAATCCCATTCCTGGGGGCAAAGACCACCAGGCCAGGTGACCCGGCCAGGGATGGTTTTCCATTAGGCCCAA--GAGGAA---CTCGGCCCAGGATGGAGAATCCTCTGGGGCCCCGGGGAGGAGAGCCAGAGCTGTCAGAGGGCCCAGGCCCCAGGAACTCCTGAGGAGGAAACCTG-GTTGCTTGGAAT----AGGTCTGGCCTCCTTTGGAGCTAAGGCCTGGGATACACACAAGGTGAGACTGCACCTTCC---GGCACCAGGACT----GGACAGGTGAGGG------GGCAGTGC--------CAGC---------CAGGACCGTGAAGCTGCG
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             199511 344 -   1040364 GAGAAAGAAT-TCAGGGGAGTTCAGCCTTGGGTGGGGGTGGTTCTCCTGGAGCTCCAGTCCT-GGAGAGGTGA-CACCAGGTCAGGTGGTCAAGTCAGTGAT-GGTTTCATTTGGGGCCAGAAAGGGA----CCAGATCCCGAATGGAGATTCCACTGGGGTCCAGCGGAGGAGAGCCAGAGCTGGCAG--------------AGGAAACTCCCCGAAGGAGACCTGTGTTTCTGGGAATTGCTGGGTTC---------------CAAGGTCCAGGCTGGACACAAAGTTAGGGCATGCCTTCT---GGTGCCAGAACC----AAGAGGTTCAGGGGACCTGGCTGATGTCCACAGGGCAGCCCCACATAGGAGAGCGA-AAGGGTGGG
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             114224782 1212 - 132174527 M
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=7343192.000000
s hg38.chr15_KI270850v1_alt    248451 802 +    430880 CCAGCACGGA-------CCCCTTTCTGCAA-CCCAC-CCA-TCCCTCCCTGCAGCACCTCGCCTCCTCCAGGCAAGAATCTGAGCCTTGACCACAGCTCCCTCTCTCACACAGCTTCCTTCTTTGGTTAGAACCACCCGGAGGTGACTGTGGCCATGGCTCTGACTGACATAGACCTGCAGCTGCAGTTCTCCATGTCCCAACCCGAAGCCCTCCTTCTCCTGGCAGCAGGCCCAGCTGACCACCTCCTGCTGCAGCTCTACTCTGGACACCTGCAGGTGAGTGACGT--CCCCctggga------------ttggggc--gagattccttgtctagctttgagtgaaccccagctggctgt-tgaccttgt--gta-----------agtcac--ttt--tcttgg-ggtctcaagttctccactgtgggatggg---CAGCAGCAGCTCAGAAATGGTAAATCcttcatgaactggctctgcccaccggctccttccaaccatgttt----cccaccacaagccctcactggccctttgtgctc-tgactgcactgaactgctttc-agttcctggccatcttatggtcacttgctgccaggcctt--tggtcatcacact-cctcctgccaggtgtgtgacccac---ccattccctgtacctgccgaactctagtctctccttgaagtttcagtgtgggcat--cccctcct----------------------------cctcggcgagacccc---------c--tcct----------------------------------------g--ggcccccatg----acCCCTGC--GCATCCTGGTGGCACTGCACCAATTTATCTGCAGCACCACTGT-CTGTCCATGAGAGTAACAGCACCAGTACTGCCT-----CAGCt---tcattt--ttccatttcatccttcaagaca
s panTro5.chrY               25710143 786 -  26350515 CCAGCACGGA-------CCCCTTTCTGCAA-CCCAC-CCA-TCCCTCCCTGCAGCACCTCACCTCCTCCAGGCAAGAATCTGAGCCTTGACCACAGCTCCCTCTCTCATACAGCTTCGTTCTTTGGTGAGAACCACCTGGAGGTGACTGTGGCCGTGGCTCTGACTGACATAGACCTGTAGCTGCGGTTCTCCATGTCCCAACCCGAAACCCTCCTTCTCCTGGCAGCAGGCCCAGCTGACCACCTCTTGCTGCAGCTCTACTCTAGACACCTGCAGGTGAGTGA------------------------------GGGC--GAGATTCCTTGTCTAGCTTTGAGTGAACCccagctggctgtgtgaccttgt--gta-----------agtcac--ctt--tcttgg-ggtctcaagttctccactgtgggatggg---CAGCAGCAGCTCAGAAATGGTAAATCcttcatgaactggctctgctcaccagctccctccaaccatgttt----cccaccacaagccctcactgg-cctttgtgctc-tgactgcactgaactgctttc-agttcctggccatcttatggtcacttgctgccaggcctt--tggtcatcacact-cctcctgccaggtgtgtgccccac---ccattccctgcacctgcctaactctagcctctccttgaagtttcagtgtgggcat--cccctcct----------------------------cctgggcaaggcccc---------c--tcct----------------------------------------g--ggcccccatg----acCCCTGT--GCATCCCGGTGGCACTGCACCAATTTCTCTGCAGCACCACTGT-CTGTCCATGACAGTAACAGCACCAGTACTGCCT-----CAGCt---tcattt--ttccatttcatcctccaagaca
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       346993 803 +    378907 CCAGCACGGA-------CCCCTTTCTGCAA-CCCAC-CCA-TCCCTCCCTGCAGCACCTCGCCTCCTCCAGGCAAGAATCTGAGCCTTGACCACAGCTCCCTCTCTCACACAGCTTCCTTCTTTGGTGAGAACCACCTGGAGGTGACTGTGGCCATGGTTCTGACTGACATAGACCTGCAGCTGCAGTTCTCCACGTCCCAACCAGAAGCCCTCCTTCTCCTGGCAGCAGGCCCAGCTGACCACCTCCTGCTGCAGCTCTACCCTGGACACCTGCAGGTGAGTAACAT--CCCCCTGgga------------ttggggc--gagattccttgtctagctttgactaaaccccagctggctgtgtgaccttgt--gta-----------agtcac--ctt--tcttgg-ggtctcaagttctccactatgggatggg---CAGCAGCAGCTCAGAAATGGTAAATCcttcatgaactggctctgcccaccggctccctccaaccatgttt----cccaccacaagccctcactggccctttgtgctc-tgactgcactgaactgctttc-agttcctggccatcttgtggtcacttgctgccaggcctt--tggtcaccacact-cctcctgccaggtgtgcaccccac---ccattccctgcacctgcctaactctagcctctccttgaagtttcagtgtgggcat--cccctcct----------------------------cctgggagaggcccc---------c--tcct----------------------------------------g--ggcccccatg----acCCCTGC--GCATCCCGGTGGCACTGCACCAATTTCTCTGCAGCACCACTGT-CTGTCCACGACAGTAACAGCACCAGTACTGCCT-----CAGCt---tcattt--ttccatttcatccttcaagaca
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62592809 801 + 169600520 CCAGCATGAA-------CCCCTTTCTGCAA-CCCAC-CCG-TCCCTCTCTATGGCACCTCACCTCCTCCAGGCAAGAATCTGAGCCTTGACCAGAGCTCCCTCTCTCACACAGCTTCCTTCTTCGGTGAGAACCACCTGGAGGTGCCTGTGGCCACGGCTCTGACCAACATAGACCTACAGCTGCAGTTCTGCACCTCCCAACCTGAAGCCCTCCTTCTCCTGGCAGCAGGCCCAGCTGACCACCTCCTGCTGCAGCTCTACTCTGGATGCCTGCAGGTGAGTGATAT--CCCCctggga------------tgggggt--gagattccttctctagctt----tgaaccccagctggctgtgtgaccttgt--gta-----------agtcac--ttttatcttgg-gtcctcaagttctccaccatgggatggg---CAGCAGCAGCCCGGAAATGGTAAATCcttcctgaattggctctgcccaccagctccctccaaccatgttt----cccaccacaagccctccctggccatttgtgctc-tgactgcactgaactgctttc-agttcctggccatcttatggtcacttgctgccaggcctt--tggtcactacact-gcttctgccaggtgcgtgcctcac---tcattccgtgcacctgcctaactctagcctgtccttgaagtttcagagtgagcgt--cccctcct----------------------------cctgggcgaggcccc---------c--tcct----------------------------------------g--agcccccatg----acccctgt--gcatccctgtggcactgcaccaatttctctgcactaccactgt-CTGTCCACGACAGTAACAGCACCAGTACTGCCT-----CAGCt---tcattt--ttccatttcatccttcaagaca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106513201 801 - 171882078 CCAGCATGAA-------CCCCTTTCTGCAA-CCCAC-CCG-TCCCTCTCTATGGCACCTCGCCTCCTCCAGGCAAGAATCTGAGCCTTGACCAGAGCTCCCTCTCTCACACAGCTTCCTTCTTCGGTGAGAACCACCTGGAGGTGCCTGTGGCCACGGCTCTGACCAACATAGACCTACAGCTGCAGTTCTGCACCTCCCAACCTGAAGCCCTCCTTCTCCTGGCAGCAGGCCCAGCTGACCACCTCCTGCTGCAGCTCTACTCTGGATGCCTGCAGGTGAGTGATAT--CCCCctggga------------tgggggt--gagattccttctctagctt----tgaaccccagctggctgtgtgaccttgt--gta-----------agtcac--ttttatcttgg-ggtctcaagttctccaccatgggatggg---CAGCAGCAGCCCAGAAATGGTAAATCcttcctgaactggctctgcccaccagctccctccaaccatgttt----cccaccacaagccctccctggccatttgtgctc-tgactgcactgaactgctttc-agttcctggccatcttatggtcacttgctgccaggcctt--tggtcactacact-gcttctgccaggtgcatgcctcac---tcattccctgcacctgcctaactctagcctgtccttgaagtttcagagtgagcgt--cccctcct----------------------------cctgggcgaggcccc---------c--tcct----------------------------------------g--agcccccatg----acCCCTGT--GCATCCCTGTGGCACTGCACCAATTTCTCTGCACTACCACTGT-CTGTCCACGACAGTAACAGCACCAGTACTGCCT-----CAGCt---tcattt--ttccatttcatccttcaagaca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6247156 801 -   6271500 CCAGCATGAA-------CCCCTTTCTGCAA-CCCAC-CCA-TCCCTCTCTATGGCACCTCGCCTCCTCCAGGCAAGAATCTGAGCCTTGACCAGAGCTCCCTCTCTCACACAGCTTCCTTCTTCGGTGAGAACCACCTGGAGGTGTCCGTGGCCACGGCTCTGACCGACATAGACCTACAGCTGCAGTTCTGCACGTCCCAACCTGAAGCCCTCCTTCTCCTGGCAGCAGGCCCAGCTGACCACCTCCTGCTGCAGCTCTACTCCGGACGCCTGCAGGTGAGTGACAT--CCCCctggga------------tgtgggt--gagattccttctctagctt----tgaaccccagctggctgtgtgaccttgt--gta-----------agtcac--ttttatcttgg-ggtctcaagttcttcaccatgggatggg---CAGCAGCAGCCCAGAAATGGTAAATCcttcctgaactggctctgcccaccagctccctccaaccatgttt----cccaccacaagccctccctggccatttgtgctc-tgactgcactgaactgccttc-agttcctggccatcttatggtcacttgctgccaggcctt--tagtcactacact-gcttctgccaggtgcgtgcctcac---tcattccctgcacctgcctaactctagcctctccttgaagtttcagagtgagcgt--cccctcct----------------------------cctgggcgaggcccc---------c--tcct----------------------------------------g--agcccccatg----acccctgt--gcatccctgtggcactgcaccaatttctctgcactaccactgt-CTGTCCACGGCAGTAACAgtaccagtactgcct-----cagct---tcattt--ttccatttcatccttcaagaca
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5139874 801 +   5160157 CCAGCATGAA-------CCCCTTACTGCAA-CCCAC-CCG-TCCCTCTCTATGGCACCTCGCCTCCTCCAGGCAAGAATCTGAGCCTTGACCAGAGCTCCCTCTCTCACACAGCTTCCTTCTTCGGTGAGAACCACCTGGAGGTGTCCGTGGCCACGGCTCTGACCGACATAGACCTACAGCTGCAGTTCTCCACCTCCCAACCTGAAGCCCTCCTTCTCCTGGTAGCAGGCCCAGCTGACCACCACCTGCTGCAGCTCTACTCCGGACGCCTGCAGGTGAGTGACAT--CCCCctggga------------tgggggt--gagattccttctctagctt----tgaaccccagctggctgtgtgaccttgt--gta-----------agtcac--ttttatcttgg-ggtctcaagttcttcatcatgggatggg---CAGCAGCAGCCCAGAAATGGTAAATCcttcctgaactggctctgcccaccagctccctccaaccgtgttt----cccatcacaagccctccctggccatttgtgctc-tgactgcactgaactgccttc-agttcctggccatcttatggtcacttgctgccaggcctt--tagtcactacact-gcttctgccaggtgcatgcctcac---tcattccctgcacctgcctaactctagcctctccttgaagtttcagagtgagcgt--cccctcct----------------------------cctgggcgaggcccc---------c--tcct----------------------------------------g--agcccccatg----acccctgt--gcatccctgtggcaccgcaccagtttctctgcactaccactgt-CTGTCCACAGCAGTAACAGCACCAGTACTGCCT-----CAGCt---tcattt--ttccatttcatctttcaagaca
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7708743 812 +  58131712 CCAGCATGGA-------CCCCTTTCTTCAA-CCCAC-CGG-TACCTCTTTGTGGCACCTCACCTCCTCCAGGCAAGCATCTGAGCCTGGACCACAGCTCCCTCTCTCATACAGCTTCCTTCTTCGGTGAGAACCACCTGGAGGTGCCTGTGGCCACAGCTCTGACCGACATAGACCTACAGCTGCAGTTCTCCACGTCCCAGCCCGAAGCCCTCCTTCTCCTGGCAGCAGGCCCAGCTGACCACCTTTTGCTGCAGCTCTACTCTGGACGCCTGCAGGTCAGTGACGT--CCCCCTGGGATCTGGGTGGGATTCAGGGT--GGGATTCCTTCTCTAGCTTTGAGTGAACCCCAGCTGGCTGTGGGACCTTGT--G---------------------TTTTATCTTAG-GGTCTCAAGTTCTCCACTGTGGGATGGG---CAGcagcagcctagaaatggtaaatccttcatgaactggctctgcccactggctccctccaaccacgttt----cccaccacaagcccttgctggccctttgtgctc-tgaccgcactgaactgctttc-agttcccggccatcttacagtcgcttgatgccaggcctt--tggtcactacact-ccttctgccaggtgcgtgcctcac---ccattccctgcacatgcctaactccagcctctccttgaagtctcagtgtggacat--cccctcct----------------------------cctgggtgaggcccc---------c--tcct----------------------------------------g--ggtccccagg----acCCCTGT--GCATCCCTGTGGCACTACACCAATTTCTCTGCAGCACCACTGC-CTGTCCACGACAGTAACAgcaccagtactgcct-----cagcttcctccttt--ttccatttcatccttcaagaca
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1097780 801 +   1458659 CCAGCATGAA-------CCCCTTTCTGCAA-CCCAC-CCG-TCCCTCTCTATGGCACCTCGCCTCCTCCAGGCAAGAATCTGAGCCTTGACCAGAGCTCCCTCTCTCACACAGCTTCCTTCTTCGGTGAGAACCACCTGGAGGTGCCTGTGGCCACGGCTCTGACCGACATAGACCTACAGCTGCAGTTCTCCACCTCCCAACCTGAAGCCCTCCTTCTCCTGGCAGCAGGCCCAGCTGACCACCTCCTGCTGCAGCTGTACTCCGGACGCCTGCAGGTGAATGACAT--CCCccggga-------------tgggggt--gagattccttctctagctt----tgaaccccagctggctgtgtgaccttgt--gta-----------agtcac--ttttatcttgg-ggcctcaagttctccaccgtgggatggg---CAGCAGCAGCCCAGAAATGGTAAATCcttcctgaactggctctgcccaccggctccctccaaccatgttt----cccaccacaagccctccctggccatttgtgctcttgactgcactgaactgctttc-agttcctggccatcttatggtcacttgctgccaggcctt--tagtcactacact-gcttctgccaggtgcgtgcctcac---tcattccctgcacctgcctaactctagcctctccttgaagtttcagagtgagcat--cccctcct----------------------------cctgggcgaggcccc---------c--tcct----------------------------------------g--agcccccatg----acccctgt--gcatccctgtggcactgcaccagtttctctgcactaccactgt-CTGTCCACAGCAGTAACAGCACCAGTACTGCCT-----CAGCt---tcattt--ttccatttcatccttcaagaca
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       308313 798 +   4111199 CCAGCACGAA-------CCCCTTTCTGCAA-CCCAC-CCG-TCCCTCTCTATGGCACCTCGCCTCCTCCAGGCAAGAATCTGAACCTTGACCAGAGCTCCCTCTCTCACACAGCTTCCTTCTTTGGTGAGAACCACCTGGAGGTGTCTGTGGCCACGGCTCTGACCGACATAGACCTACAGCTGCAGTTCTCCACATCCCAGCCTGAAGCCCTCCTTCTCCTGGCAGCAGGCCCAGCTGACCACCTCCTGCTGCAGCTCTACTCCGGACGCCTGCAGGTGAGTGACAT--CCCCctggga------------tgggggt--gagattccttctctagctt----tgaaccccagctagctgtgtgactttgt--gta-----------agtcac--ttttatcttgg-ggtctcaagttctccaccatgggatggg---CAGCAGCAGCCCAGAAATGGTAAATCcttcctgaactggctctgcccatcggctccctccaatcatgttt----cccaccagaagccctccctggccatttgtgctc-tgactgcactgaactgctttc-agttcctggccatcttatggtcacttgctgccaggcctt--tggtcactacact-gcttctgccagctgcatgcctcac---tcattccctgcacctgcctaactctagcctctccttgaagtttcagtgtgagcat--cc---cct----------------------------cctgggcgaggcccc---------c--tcct----------------------------------------g--agcccccatg----acccctgt--gcatccctatggcactgcaccagcttctctgcactaccactgt-CTGTCCACGACAGTAACAGCACCAGTACTGCCT-----CAGCt---tcattt--ttccatttcatccttcaagaca
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114225994 812 - 132174527 CCAGCATGGA------CCCCCTCCTTGCAATTCCAT-TCGTTCCCTCTCCGCAGCACTTGG-CTCCTCCAGGCAAGAGTCTGAGCCTTGACCACAGCGCCCTCTCTCATACAGCTTCCTTCTTCGGTGAGAACCACCTGGAGGTGCCTGTGGCCACGGCTCTCACCGACATAGA-CTACAGCTGCAGTTCTCCACGTCCCAGCCCGAAGCCCT-CTTCTTTTGGCAGCAGGCCCAGCTGACCACCTCCTGCTGCAGCTCTACTCTGGACGCCTGCAGGTCAGTGACAT--CCCCctggga------------tcaggat--aggtttctttttctagctttgagtgaaccacagctggctgtatgaccttgt--gta-----------ggtcac--ttttatcttggcggtctcaagttctccactgtgagatggg---CAGCAGCATCCCAGAAATGGTAAATCcttcatgaactggctctgcccgccggctcc-tccagccatgtttcccacccaccacaagccctcgctggccctttgtgctc-tgactgcactgaactgctttc-agtttctggccatcttacagtcacttgctgccaggcctt--tggtcgccacact-tcttctgtcaggtgcatgcctcac---ccattccctgcacctgcctaactcctgcctctccttgaagtctcagtgtgagcat--ccactcct----------------------------cctgggctaggtcac---------c--tcct----------------------------------------g--ggcccccaCT----ACCCCCGT--GCATCCTGGTGACACTGCACCAATGTCTCTGCAGCACCACTGT-CTGTCCATGACGGTAACAGCACCAGTACTGCCT-----CGGCTTCCTCATtt--ccccatttcatccttcaagaca
i calJac3.chr10             M 1212 C 0
s saiBol1.JH378276            2882555 831 +   3282555 CCAGCATGGA-------CCCCTCCCTGCAA-CCCAC-CCG-TCCCTCTCTGCGGCACCTGGCCTCCTCCGGGCAAGAGTCTGAGCCTTGACCACAGCGCCGTCTCTCATACAGCTTCCTTCTTCGGTGAGAACCACCTGGAGCTGCCAGTGGCCGCGGCTCTCAGCGACATAGACCTACAGCTGCAGTTCTCCACGTCCCAGCCCGACGCCCTCCTTCTCCTGGCAGCAGGCCCAGCTGACCACCTCCTGCTGCAGCTCTACTCTGGACGCCTGCAGGTCAGTGACGT--CCCCctggga------------tcggggt--aggtttctttctctagctttgagtgaaccgcagctggctgtgtgaccttgt--gta-----------ggtcac--ttatatcttgggggtctcgagttctccactgtgagatggg---CAGCAGCATCCCAGACATGGTAAACCcttcacgaactggctctgcccgccggctac-tccagccatgtttcctacccaccacaagccctcgctggccctttgtgctc-tgactgcactg-actgctttc-agtttctggccatcttacagccgcttgttgccaggcctc--tagtcaccacacc-acttccgccaggtgcacgcctcac---ccattccctgcacctgcctaactccagcctctccttgaagtctcagtgtgagcat--cccctcct----------------------------cctgggctaggtccc---------c--tcctcctgggctaggtcccttcctcctgagctAGGTCCCCTCCCG--GGCCTCCACT----ACCCCCGT--GCATCTCGGTGGCATGGCACCAATTTC---------------------CCATGACAGTAACAgcaccagcaccgcct-----cagcttcctcattt--ccccgtttcatccttcaagaca
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       835010 811 +   1024465 CCAGCATGGA-------CCCCTCCCTGCAA-CCCAC-CCG-TCCCTCTCCGGAGCACCTGGCCTCCTCCAGGCAAGAGTCTGAGCCTTGACCACAGCGCCCTCTCTCATACAGCTTCCTTCTTCGGTGAGAACCACCTGGAGGTGCCTGTGGCCACGGCTGTCACCGACATAGACCTACAGCTGCAGTTCTCCACGTCCCAGCCCGAAGCCCTCCTTCTCCTGGCAGCAGGCCCAGCTGACCACCTCCTGCTGCAGCTCTACTCTGGACGCCTGCAGGTCAGTGACAT--CTCCCTGGGA------------TCGGGGT--AGGTTTCTTTCTCTAGCTTTGAGTGAACTGCAGctggctgtctgaccttgt--gta------------gtcac--ttttatcttgggggtctcaagttctccactgtgagatggg---CAGCAGCATCCCAAAAATGGTAAATCcttcatgaactggctctgcccgccggctcc-tccagccatgtttcctaccccccccaagccctcgctggccctttgtgctc-tgactgcactgaactgctttc-agtttctggccatcttacagtcgcttgctgccaggcctt--tggtcaccacacc-acttctgccaggtgcatgcctcac---ccattccctgcacctgcctaactccagcctctctttgaagtctcagtgtgagcat--cccctcct----------------------------cctgggctaggtccc---------c--tcct----------------------------------------g--ggcccccaCT----ACCCCCGT--GCATCCCTGTGGCACTGCACCAATTTCTCTGTAGCACCACTGT-CTGTCCATGACAGTAACAgcaccagtactgcct-----cagcttcctcattt--ccccatttcatccttcaagaca
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2754852 812 -   3745603 CCAGCATGGA-------CCCCTCCCTGCAA-CCCAC-CTG-TCCTTCTCCACAGCACCTGGCCTCCTCCAGGCAACAGTCTGAGCCTTGACCACAGCACCCTCTCTCATACAGCTTCCTTCTTCGGTGAGAACCACCTGGAGGTGCCTGTGGCCACCGCTCTCACTGACATAGACCTACAGCTGCAGTTCTCCACGTCCCAGCCCGAAGCCCTCCTTCTCCTGGCAGCAGGCCCAGCTGACCACCTCCTGCTGCAGCTCTACTCTGGACGCCTGCAGGTCAGTGACGT--CCCCctggga------------tcggggt--aggtttctttctctagctttgagtgaaccacagctggctgtgtgacctcgt--gta-----------ggtcac--ttttatcttgggggtctcaagttctccattgtgaaatggg---CAGCAGCATCCCAGAAATGGTAAATCcttcatgaactggctctgcccgccggctcc-tccagccatgtttcccacccaccacaagccctcactggttctttgtgctc-agactgcactgaactgctttc-agtttctggccatcttacagtcgcttgctgccaggcctt--tggtcgccacact-tcttctgccaggtgcgtgcctcac---ccattccctgcacctgcctaactccagcctctccttgaagtctcagtgcgagcat--cccctcct----------------------------cctgggctaggtccc---------c--tcct----------------------------------------g--ggcccccaCT----ACCCCTGT--GCATCCCGGTGGCACTGCACCAATTTCTCTGCCGCACCACTGT-CTGTCCATGACAGTAATAGCACCAGTGCTGCCT-----CGGcttcctcattt--ccccatttcatccttcaagaca
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8727192 792 -  36342412 --------------------------GCAT-GCCA------TCCAACTCTTCAGCAGCTGGCCACCTCTAGGCAAGAGTCTGAGCCTTAACCACAGCTGCCTCTCTCACACAGCCTCCTTTTTTGGGGAGAACCACCTGGAGGTGCCTGTGGCCACAGCTCTGACCGATATAGACATACAGCTCCAGTTTGCCACATCCCAGCCTGAAGCCCTACTTCTCCTGGCAGCAGGTCCGGCTGACCACCTCCTGCTGCAACTCTACTCTGGACGCCTGCAGGTCAGTGACAT--C-CCCTGGGA------------TTGTGGG--GAGAGTCCTTCTCTATCTTTAAGTGAATCCCAACTGGCTGTGTGACATTGT--ACAGTCACTGTACAAGTCACTGTTTTACCTTGG-GGTCT---------CACTGTGGGATCAG---CAGTAGCCTCCCAGAAAGCATGAAGCtctcatgaactggctgtgcccaccggctctttccaagttcattt----cttaccac-atccccagctagcc-tttgtcctc-tgaccacactgaactgctttc-agttcctggccatcttgtggtcacttgatggcagg-ctt--tgctaactacact-ccctctgcctgatgtatgcctcac---ccattccacacacctgcctgactctagcctctctctgaagtctcagtatggttgc--cccttcctccaggaaatat---tcccctggtgcttgcctggaatggaccac---------c--tctt----------------------------------------gtcagctctccca----atcccaGG--GCTTCCCTCTGGCATTGAATCAATCATTCAGCATCACCACTAT-CTAttc-------------------tgtttttt-----ttgtt---ttgttttgttttgttttgttttttgagaca
i otoGar3.GL873530          C 0 I 424
s mm10.chr9                  56883448 791 + 124595110 TCAACATAGAAGCCCTTCCCTCCCCTGTAG-CCCAT-CTG-TCTGTCTCTACGGTCCCTAACCTCCTCCTGGCCGGAGCCTGA-CCTTGACCACAGCTCCCTCTCTCAC-CAGCCTCCTTCTTCGGGGAGAACCACCTGGAGGTGCCCGTGCCCTCAGCTCTGACCAGAGTAGACCTGCTGCTCCAGTTCTCCACATCCCAGCCCGAAGCCCTGCTCCTCTTGGCAGCAGGCCAAGATGACCATCTCTTGCTCCAGCTCCACTCAGGATGCCTCCAGGTGAGTGGCAC--ACCC--GGGA------------ACAGGGCTAGAGATCCCTTCTGCAGGTTGGGAGGCCTCGCCTTTGGCTGTGCAACCTCAT--GCA-----------AGTCAC--CTCTGCCCTTG-GGTCTTGGTTTGTCTGCCATGGG-TGGC---TAGCAACTTCCCAGA----GTGAGCTCCTGGTGCAGTGGCTCTGCCTACGAGCTGTCTCGGGTCTCACTT----CTCTTCGTCGCCCCTAGTTGACCATCTGGACTG-AGCTTTCTCTG-------TCC-A--------CCTCCTCGTAGTATCTGACTAACAGGCTTTCCTCACTACTACCCTGGCTTTTCTCTTTTGCCTGCCTTTCTTTCTCTTCCCCATGCCTGACCAGTCC---CCTCTCCTTGACATCTATGTGTGAGGAGTATCCCTGCT----------------------------CCCAGGTAGTATCCCTGTTCTACTC--ACCT----------------------------------------G--A----CTAGG----ACTCCCCC--TCCCCCCG----------------TCCTCTGTAATAAGGTggtacaatctgagatagtaacaatgcctttatcatctaccaccaccc---tcttttgctcttattgcatgctttaagac-
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1733561 698 -  40214260 CCAGCACAAA-------------------A-CCCGCATCG-TCC------GCAGCACCTCTCCTCCTCCAGGCAAGGGACTGACCC--------AGCTCCGTCTCTCACACAGCCTCCTTCTTTGGGGAGAACCACCTGCAGGTGCCGGTGACCACAGCTCTGAGCAACATAGACCTCCGGCTACAATTCTCCACGTCCCAGCCCGAAGCCCTGCTCCTCCTGGCAGCAGGCCAGGCTGACCACCTCCTCCTGCAGCTCCACTCCGGATACCTGCAGGTCAGTGGCCT--CTCCCTG---------------CTGGACC-----------CCTCTAGCTTGGCACGGCCCCCAGCCGG-----TGACTTTGT--GTG-----------AGCCCC--TTTCGCCCCGA-GGTCTCTAGGTCCCTGCCACGAGGTGAA---GGACAGCGTCTCCCAAGGTGTGACTCCCTGGTGCGCCGGCTGTGCCCCGCAGCCC--TCCACCCACACTG----CCCACCACCAGCCCTGGCCGCCCC------CCC-TCACTGC------------------------------------------------GGCCTG-----------CGCT-GGTCCAGCCAGG---------CTC---TCGCTCCCCGCACGCCCC--------GCCTCGccttcaagtcccagcgtagacat--cccttcccccaggaggtacctaccccctggcactcccctgggctgggtgct---------ctatcct----------------------------------------g--ggcc-ctgca----gcccctgtgagcctcctgctga----gcaccggtcaCCCC-----------AT-CTGTCCGTGATGGTAACG--accagtatcgcca-----aagcctctccattt--tcccatttcgtcctgccagcc-
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             199855 823 -   1040364 CCGGCATGGA------GCCCCTGCCTGCAG-CCTAC-CCG-GCCATCTCCGAGGTGTCCATCCTCCTCCACACAAGAGGCCGAGCCTCGACCACA-CTCCCTCTCTCACACAGCCTCCTTCTTCGGTGGGAGCCATCTGGAGGTGCCTGTGGCCACGACCCTGACTGACATCGACCTCCGGCTGCAGTTCTCCACGGCCCAGCCCGAAGCTTTCCTGCTCTTGGCAGCGGGCCCAGCTGACCACCTCCTGCTGCAGCTCTTCTCTGGACGCCTGCAGGTCAGTGACATTCCCCCCAGGGT------------CAAGGAC--AGGATCTCTTCTCTGGCTTTGAATGGCCCCCCACT-GCTGTGGGACCTTATTCGAA-----------AGTCCC--TGTCACCTTGG-GCTCTCGAGTTCGCACCTGTGAAATGGACACCACCAGCACCCCATAAAGTGTGAATcc-tcatgaactggctcagctctcctgtgcgcctcaacctccctt----ctca-cacaa-ccccagctggccccttttgctc-tgaccacgctgagccaccttctgggccctgggcatctcggggtctctggccacca-gcctt--ggctcact-tact-ccccctgcc-----------tcat---gggttccgtcca-----ctggctccagcctc-ccctgagatctccctgtgggtgt--cccttcct-ccaggaagtgtcctcacctggcactcacctggatggggccct---------c--tcct----------------------------------------g--ggctctgcttacacacacccag--gcatccctctggcagagcaccagtcaccctgaattgccattat-ctgtCGATGATAGTGGCAGCACCCGtaaagcca-----cagcgtccttctct--ttccatttgctcactc-agcca
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=1064277.000000
s hg38.chr15_KI270850v1_alt    249253 127 +    430880 ccacaagctttattatcaaggagtcttgtggctcctacttgagtcttaccccataccaggaagagtttaagaacccagggtcttagtccaaatttggggcaggctgggtgcagtggcttatgcctat
s panTro5.chrY               25710929 127 -  26350515 ccacaagctttattatcaaggagtcttgtggctccttcttgagtcttccccaatcccataaagagtttaagaacccagggtcttagtgcaaatttggggcaggctgggtgcagtggctcatgcctat
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       347796 127 +    378907 ccacaagctttattatcaaggagtcttgtggctccttcttgagtcttcccccataccaggaagagtttaagaacccagggtcttagtccaaatttggggcaggctgggtgcagtggctcatgcctat
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62593610 127 + 169600520 ccacaagctttattatcaaggagtcttgtggctccttcttgagtcttcccccataccatgaagagtttaagaacccagggtcttagtccaaatttggggcaggctgggtgcagtgactcatgcccat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106514002 127 - 171882078 ccacaagctttattatcaaggagtcttgtggctccttcttgagtcttcccccataccatgaagagtttaagaacccagggtcttagtccaaatttggggcaggctgggtgcagtgactcatgcctat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6247957 127 -   6271500 ccacaagctttattatcaaggagttttgtggctccttcttgagtcttcccccataccatgaagagtttaagaacccagggtcttagtccaaatttggggcaggctgggtacagtgactcatgcccat
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5140675 127 +   5160157 ccacaagctttattatcaaggagttttgtggctccttcttgagtcttcccccataccatgaagagtttaagaacccagggtcttagtccaaatttggggcaggctgggtacagtgactcatgcctat
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7709555 126 +  58131712 ccacaagctttgttagtgaggagtcttgtggctctttcttgagtcttctcccaaaccatgaagag-ttaagaacccagggtcttattccaaatttgtgccaggctgagtgcagtggctcatgcctat
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1098581 127 +   1458659 ccacaagctttattatcaaggagttttgtggctccttcttgagtcttcccccataccgtgaagagtttaagaatccagggtcttagtccaaatttggggcaggctgggtgcagtgactcatgcctat
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       309111 127 +   4111199 ccacaagctttattatcaaggagtcttgtggctcgttcttgagtcttcccccataccgtgaagagtttaagaacccagggtcttagtccaaaTTTGGGGCAggctgggtgcagtgactcatgcctat
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114226806 126 - 132174527 ccacaagctttgttagcaaggagtcttgtggctctttcttgagtcttcccccaaaccatg-agggtttaagaacccagggtcttactcCAAATCTGGGGCAggctgggtgcagtggctcacacctat
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2883386 127 +   3282555 ccacaagctttgttagcaaggagtcttgtggctctttcttgagtcttcccccaaaccatgaagagtttaagaacccagggtcttagtccacatttggggcaggctgggtgcagtggctcatacctat
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       835821 127 +   1024465 ccacaagctttgtcagcaaggagtcttgtggctctttcttgagtcttcccccaaaccatgaagagtttaagaacccagggtcttagtccaaatttggagcaggcagggtgcagtggctcacacctat
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2755664 127 -   3745603 ccacaggctttgttagcaatgagtcttgtggctctttcttgagtcttccctcacaccatgaagagtttaagaacccagggtcttagtccaaatttggggcaggctgggtgcagtggctcacacctat
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  56884239  82 + 124595110 ----------------caaggggtcatttagctgtctcttgagtcttccccctaatcataaaatgtttaggaatccaggatctta-----------------------------ggcttagacccat
i mm10.chr9                 C 0 I 519
s canFam3.chr30               1734259 108 -  40214260 ccgctagctttatcagcaaggagcctcctggctcc--cctgaggctcccccttaaccataacgaatttgagaacctgaggtctccgtccaaattcggga-aagccggctgc----------------
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             200678  66 -   1040364 ccacaag---------caaggagttttctggttctgtctggaggattaccgc---tcatgaggtctttgagaaccctg-------------------------------------------------
i dasNov3.JH572216          C 0 C 0
e otoGar3.GL873530            8727984 424 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=1295713.000000
s hg38.chr15_KI270850v1_alt    249380 198 +    430880 aatcccaccactttgggagaccaaggtggaaagatcacttgagcctaggagttcaagactggcctgagccacacaatgagaccccatctctattttagaaggaaaaaaaaaacaa--attaacaaatttggggcagccatctctttccacaccccagtgggaagaggactagggcttggtcagtctgctgc-tgtcattgc
s panTro5.chrY               25711056 193 -  26350515 aatcccaccactttgggagaccaaggtgggaagatcacttgagcctaggagttcaagactggcctgagccacacaatgagacctcatatctattttagaaagaaaaaa-----aa--attaacaaatttggggcagccatctccttccacaccccagtgggaagaggactagggcttggtcagtctgctgc-tgtcattgc
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       347923 194 +    378907 aatcccaccactttgggagaccaaggtgggaagatcacttgagcctaggagttcaagactggcctgagccacacaatgagaccccatctctattttagaaagaaaaaaa----aa--attgacaaatttggggcagccatctccttccacaccccagtgggaagaggactagggcttggtcagtctgctgc-tgtcattgc
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62593737 195 + 169600520 aatcccaccactttggcaggccaagatgggaagatcacttgagcctaggagttcaagactggtctgagtcacacaatgagaccccgtctctattttagaaagaaaaaaac---aa--aaagtcaaatttggggcaaccatctccttccacaccccagtgagaagagaactagggcttggtcagtctgctgc-tgtcattgc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106514129 195 - 171882078 aatcccaccactttggcaggccaagatgggaagatcacttgagcctaggagttcaagactggtctgagtcacacaatgagaccccgtctctattttagaaagaaaaaaac---aa--aaagtcaaatttggggcaaccatctccttccacaccccagtgagaagagaactagggcttggtcagtctgctgc-tgtcattgc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6248084 195 -   6271500 aatcccacgactttggcaggccaaggtgggaagatcacttgagcctaggagttcaagactggtctgagtcacacaatgagaccccgtctctattttagaaagaaaaaacc---aa--aaagtcaaatttggggcaaccatctccttccacaccccagtgagaagagaactagggcttggtcagtctgctgc-tgtcattgc
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5140802 195 +   5160157 aatcccacgactttggcaggccaaggtgggaagatcacttgagcctaggagttcaagactggtttgagtcacacaatgagaccccgtctctattttagaaagaaaaaacc---aa--aaagtcaaatttggggcaaccatctccttccacaccccagtgagaagaggactagggcttggtcagtctgctgc-tgtcattgc
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7709681 184 +  58131712 aatcccaccactttgggaggccaaggtgggaagatcacttgagcctgagagttcaaggctggcctgagccacacaatgagaccccatctctatttttaagagaaaaa----------------aaatttgggtaagccatctccttccacaccccagtggggagaggactagggcttggccagtctgctgc-tgtcattgc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1098708 195 +   1458659 aatcccaccactttggcaggccaagatgggaagatcacttgagcctaggagttcaagactggtctgagtcacacaatgagaccccgtctctattttagaaagaaaaaaac---aa--aaagtcaaatttggggcaaccatctccttccacaccccagtgagaagaggactagggcttggtcagtctgctgc-tgtcattgc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       309238 195 +   4111199 aatcccaccactttggcaggccaaggtgggaagatcacttgagcctaggagttcaagactggtctgagtcacacaatgagaccccatctctattttagaaagaaaaaaaC---AA--AAAAACAAATTTGGGGCAACCATctccttccacaccccagtgagaagaggactagggctttgtcagtctgctgc-tgtcattgc
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114226932 183 - 132174527 aatcccaccactttgagaggccaaggtgggaagatgacttgagcctaggatttcaagactggtctgagcgacacaatgaaaccccatctctattttt----------------aa--aaaaatGAATTTGGGGCAGCCATCTCcttccacaccccagtggggagaggactagtgcttggtcagtctgctgcttgtcattgc
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2883513 183 +   3282555 aatcccaccactttgggaggccaaggtgggaagatgccttgagcctaggatttcaagactggcctgagccacacaatgagaccccatctctattttt----------------ta--aaaaatgaatttggggcagccatctccttccacacccccgtgggcagaggacgagtgcttggtcagtctgctgcttgtcattgc
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       835948 179 +   1024465 aatcccaccactttgggaggccaaggtgggaagatcacttgagcctaggatttcaagactggcctgagccacacaatgagaccccatctctattttt----------------aa--aaaaatgaatttggggcagccatctccttccacaccccagtggggagaggactagcgcttg----gtctgctgcttgtcattgc
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2755791 185 -   3745603 aatcccaccactttgggaggccaaggtgagaagatcacttgagtctaggatttcaaaactggcctgagccacacaatgagacaccatctctatttaa----------------aaagaaaaatgaatttggggcagccgtctccttccacaccccggtagggagaggactagtgcttggtcagtctgctgcttgtcattgc
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr30               1734367  74 -  40214260 --ttccaca--cttggggggttcgggggagaggacgggcggggcct-------------------------------------------------------------------ga---------------gggcgac----------------------------------------ggtccacctgccgc-tgccatggc
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             200744  91 -   1040364 -----------------------------------------------------------------aggtcata----------------------------------------ca--tagtacaaatttgggg-atccatctgcttccacaccccaatggggattcaactgtggcctcatca-cctgctgc-tgccattgc
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  56884321 519 + 124595110 I
e otoGar3.GL873530            8727984 424 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=403768.000000
s hg38.chr15_KI270850v1_alt    249578 59 +    430880 tgctcattgccacaaggtgtcactgttgaacacctatgtggtgcagtctggtgctgatg
s panTro5.chrY               25711249 58 -  26350515 tgctcactgccacaa-gtgtcactgttgaacacctatgtggtacagtctggccctgatg
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       348117 58 +    378907 tgctcactgccacaa-gtgtcactgttgaacacctatgtggtgcagtctggtgctgatg
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62593932 59 + 169600520 tgctcactgccacatggtgtcactgttgaacactaatGTGGTACAGTCTGGCACTGATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106514324 59 - 171882078 tgctcactgccacatggtgtcactgttgaacactaatgtggtacagtctggcactgatg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6248279 59 -   6271500 tgctcactgccacatggtgtcactgttgaacactaatGTGGTACAGTCTGGCACTGATG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5140997 59 +   5160157 tgctcactgccacgtggtgtcactgttgaacactaatGTGGTACAGTCTGGCACTGATG
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1098903 59 +   1458659 tgctcactgccacatggtgtcactgttgaacactaatGTGGTGCAGTCTGGCACTGATG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       309433 59 +   4111199 tgctcactgccacaaggtgtcactgttgaacaccagtgtggtgcagtctggCACTGATG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114227115 59 - 132174527 ttctcactgccacaaggtgtcactgttgaacacCAGCATGGTGCAGTCTGGCACTGATA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2883696 59 +   3282555 ttctcactgccacaaagtgtcactgttgaaCGCCAGCGTGGTGCAGTCTGGCGCTGAGA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       836127 59 +   1024465 gtctcactgccacaaggtgtcactgttgaacaccagcgtggtgcagtctggcgctgata
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2755976 59 -   3745603 ttcttattgccacaaggtgtcactgttgaacaccagcgtggtgcagtctggcgctgata
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr30               1734441 58 -  40214260 ttctctctgccaataggcggcactgttgaGCGGGGCCCGGGTGCAGCCTGGGGCCGGA-
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             200835 58 -   1040364 ttctc-ccaccacaaggggtcactgtaggaggctggcccagggcagcctggcactgatg
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  56884321 519 + 124595110 I
e otoGar3.GL873530            8727984 424 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7709865  0 +  58131712 C
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=1682519.000000
s hg38.chr15_KI270850v1_alt    249637 237 +    430880 gctgttgagctctg--------------caggt--agtgatgccacatccctacagagatgcaccatac----------caggactccaagatcatggttcttagtgttctgcctctgcagttcccatactctgccatcacctattctagc-----atc------tgggagcaccataccagagccatttcttgtgtcaatgtcatggtgacagaac----tatgtccttcatctctcc-ttgagatattcctccaccacaggtcaggcagcttttttt
s panTro5.chrY               25711307 239 -  26350515 gcggttgagctctg--------------tgggtacagtggtgccacatccctacagagatgcaccatac----------caggactccaagatcatggttcttagtgttctggttctgcagttcccgtactctgccatcacctattctagc-----atc------tgggagcaccacaccagagccatttcttgtgtcaatgtcatggtgacagaac----tatgtccttcatctctcc-ttgagatcttcctccaccacaggacagggagcttttttt
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       348175 239 +    378907 gctgttgagctctg--------------caggtacagtgatgccacacccctacagagatgcaccatac----------caggactccaagatcatggttcttagtGTTCTGGTTCTGCAGTTCCCATACTCTGCCATCACCTATTCTAGC-----ATC------TGGGAGCACCATACCAGAGCCATTTCTTGTGTCAATGTCATGGTGACAGAAC----TATGTCCTTCATCTCTCC-TTAAGATCTTCCTCCACCACAGGACAGGGAGCTTTTTGT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62593991 238 + 169600520 GCTGCTGAGCTCTG--------------CGGGTACAGTGATGCCACACCCCTACAGAGATGCACCGTAC----------CAGGACTCCAAGATCATGGCTCTTATTGTTCTGGTTTTGCAGTTCCCATAGTCTGCCA-CACCTGTTCTAGC-----ATC------TGGGAGCACCATACCAGAGCCATTTCTGGTGTCATTGTCATGGTGACAGAAC----TATGTCCTTGATCTGTCC-CTGAGATCTCCCTCCACCACAGGTCAGGGAGCTTTTCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106514383 238 - 171882078 gctgctgagctctg--------------cgggtacagtgatgccacacccctacagagatgcaccgtac----------caggactccaagatcatggctcttattgttcTGGTTTTGCAGTTCCCATAGTCTGCCA-CACCTGTTCTAGC-----ATC------TGGGAGCACCATACCAGAGCCATTTCTGGTGTCATTGTCATGGTTACAGAAC----TATGTCCTTGATCTGTCC-CTGAGATCTCCCTCCACCACAGGTCAGGGAGCTTTTCTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6248338 239 -   6271500 GCTGCTGAGCTCTG--------------CGGGTACAGTGATGCCACACCCCTACAGAGATGCACCGTAC----------CAGGACTCCAAGATCATGGCTCTTATTGTTCTGGTTTTGCAGTTCCCATACTCTGCCACCACCTGTTCTAGC-----ATC------TGGGAGCACCATACCAGAGCCATTTCTGATGTCATTGTCATGGTGACAGAAC----TATGTCCTTGATCTGTCC-CTGAGATCTCCCTCCACCACAGGTCAGGGAGCTTTTCTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5141056 239 +   5160157 GCTGCTGAGCTCTG--------------CGGGTACAGTGATGCCACACCCCTACAGAGATGCACTGTAC----------CAGGACTACAAGATCATGGCTCTTATTGTTCTGGTTTTGCAGTTCCCATACTCTGCCACCACCTGTTCTAGC-----ATC------TGGGAGCACCATACCAGAGCCATTTCTGGTGTCATTGTCATGGTGACAGAAC----TATGTCTTTGATCTGTCC-CTGAGATCTCCCTCCACCACAGGTCAGGGAGCTTTTCTT
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1098962 239 +   1458659 GCTGCTGAGCTCTG--------------CGGGTACAGTGATGCCACACCCCTACAGAGATGCACTGTAC----------CAggactccaagatcatggctcttattgttctggttttgcagttcccatactctgccaccacctgttctagc-----atc------tgggagcaccataccagagccatttctggtgtcattgtcatggtgacagaac----tatgtccttgatctgtcc-ctgagatctccctccaccacaggtcagggagcttttctt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       309492 239 +   4111199 GCTGCTGAGCTCTG--------------TGGGTACAGTGATGCCACACCCCTAcagagatgcaccatac----------caggactccaagatcatggctcttattgttctggttttgcagttcccatactctgccaccacctgttctagc-----atc------tgggagcgccataccagctccatttctggtgtcattgtcatagtgacagaac----tatgtccttcatctgtcc-ctgagatctccctccaccacaggtcagggagcttttgtt
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114227174 238 - 132174527 GCTGTTCAGTTTTG--------------TGGGTCCAACGATGCCACACCCC-ATGGAgatgctccatac----------cagaactccaaaattacagttcttagtgctctggttctacagtccccatactctgccacctcccattctacc-----atg------tgggagcactgtcccagagccatttctggtgtcaatgtcatggagacagaac----aatgtccttcatctctcc-ccaagATTTCCATCTACCCCAGGTCAGGGAGCTGTTTTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2883755 237 +   3282555 GCTGTTCAGTTTTG--------------TAGGTACGACGATGCCACACCCCTccagagatgctccaaac----------cagaactccaaaattacacgtcttagtgctctggttctgcacttcccatactctgccacctctcattctacc-----agg------tgggagcactgtaccagagccatttctggtgtca--gtcatggggatggaac----aacgtccttcatgtctcc-ccaagacttccctctaccccaggtcacggagctgttttt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       836186 238 +   1024465 gctgttcagttttg--------------tgggtacaacgatgccacacccctacagagatgcaccatac----------cagaactccagaattacagctcttagtgctctggttctacagttcccattctctgccacctcccattccacc-----atg------tgggagcactgtaccagagccatttctggtgtcaatgtcatgcggacggaaa----aatgtccttcatctct-c-ccaagacttccctctaccccaggtcagggagctgttttt
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2756035 239 -   3745603 gctgttcagttttg--------------tgggtacaacgatgccacacccctacagagatgctccatac----------cagaactccaaaattacagttcttagtgctctggttctgcagttcccatactctgccacctcccattctacc-----atg------tgggagcactgtaccagagccatttctggtgtcaatgtcatggggacgaaac----aatgtccttcatctctcc-ccaagacttccctctaccccaggtcggggagctgttttt
i aotNan1.NW_018511953v1    C 0 I 38
s otoGar3.GL873530            8728408 241 -  36342412 AGTGTTCAGCTCTGC-------------CAGGCA---------CACACTCCTAcagagatgccccatac----------ttgaactccaaggtcatggttcttagtgctctgcttcctcagttcccatgctcttccaccatccattctgctgtctgata------tggtagcaccacaccaaagccagttctggtgtcagtgtcatggagacagagctatgtatgtcctttgtctttccacaaagatctctctccaacacaggccagggagcttttctt
i otoGar3.GL873530          I 424 C 0
s canFam3.chr30               1734499 235 -  40214260 GCCCTTCCGCCCGACAGGTGTGACGGGACAGGTAGGGCGATGCCACAGCCC---GGGGA--------GC----------TGGGCTCCCAAGGCCGCCGTGCCCAGGGCTCTGCTC------TTCCCGTACTCTGCCTCCACCCATCCTGCC-----GTCCAGTAGTGGCAAGGCCACCCCAGGCCCAGTTCTGGTGCCAAAGTCCTAGAGACAGAAC----AG-----TTCTCCTCTCC-CCGCGG-CTCCCTC-ACCCCAGGTCAGGGAGCTTTTCTT
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             200893 242 -   1040364 -cggctccactgc---------------taggcataccagggccatgcccttgagggagtgctgcacacgtggcatgcatggacgcccaaggtcatactgcctcatgctctgctccttcagttcccacgctctgccaccacccaggcttcc-----atcaggctgtgggaacaccatgccaga----------gagccagtgtcacggagatagaac----cacatccctcttctcacc-ccggggatccccgcc-cctcaggtcagggagcttttctc
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  56884321 519 + 124595110 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7709865   0 +  58131712 C
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=-21188.000000
s hg38.chr15_KI270850v1_alt    249874 7 +    430880 ttttttt-----
s panTro5.chrY               25711546 3 -  26350515 ttt---------
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       348414 3 +    378907 TTT---------
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62594229 1 + 169600520 T-----------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106514621 1 - 171882078 T-----------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6248577 1 -   6271500 T-----------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5141295 1 +   5160157 T-----------
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1099201 1 +   1458659 t-----------
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       309731 1 +   4111199 t-----------
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530            8728649 2 -  36342412 -----ta-----
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30               1734734 2 -  40214260 -----TA-----
i canFam3.chr30             C 0 I 5
s dasNov3.JH572216             201135 7 -   1040364 -----tattaaa
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1      2756274 38 -   3745603 I
e mm10.chr9                  56884321 519 + 124595110 I
e calJac3.chr10             114227412 0 - 132174527 C
e cebCap1.NW_016107979v1       836424 0 +   1024465 C
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7709865 0 +  58131712 C
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2883992 0 +   3282555 C

a score=107426.000000
s hg38.chr15_KI270850v1_alt    249881 26 +    430880 ttttttcc-----cagaacacagagcatctg
s panTro5.chrY               25711549 18 -  26350515 -------------CAGAACACAGAGCATCTG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       348417 18 +    378907 -------------CAGAACACAGAGCATCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62594230 18 + 169600520 -------------CCGAACACAGAGCATCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106514622 18 - 171882078 -------------CCGAACACAGAGCATCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6248578 18 -   6271500 -------------CCGAACACAGAGCATCTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5141296 18 +   5160157 -------------CTGAACACAGAGCATCTG
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1099202 18 +   1458659 -------------ctgaacACAGAGCATCTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       309732 18 +   4111199 -------------ccgaacACAGAGCATCTT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114227412 18 - 132174527 -------------CGGAACACAGGGCATTTA
i calJac3.chr10             C 0 I 3
s saiBol1.JH378276            2883992 18 +   3282555 -------------cagaacacagggcattta
i saiBol1.JH378276          C 0 I 3
s cebCap1.NW_016107979v1       836424 18 +   1024465 -------------cagaacacagggcattta
i cebCap1.NW_016107979v1    C 0 I 20
s otoGar3.GL873530            8728651 26 -  36342412 caaacttt-----cagaatgcagaagatcta
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56884840 26 + 124595110 -----TTCAAAAGGAGAACACAGACCATCTC
i mm10.chr9                 I 519 C 0
s canFam3.chr30               1734741 20 -  40214260 ------CC-----CTCAAAACAGAGCATCTG
i canFam3.chr30             I 5 I 2
s dasNov3.JH572216             201142 21 -   1040364 ----cctt-----caaaacacag-gcctctg
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1      2756274 38 -   3745603 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7709865  0 +  58131712 C
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=46526.000000
s hg38.chr15_KI270850v1_alt    249907 8 +    430880 cctgggct
s panTro5.chrY               25711567 8 -  26350515 CCTGGGTT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       348435 8 +    378907 CCTGGGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62594248 8 + 169600520 CCTGGGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106514640 8 - 171882078 CCTGGGCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6248596 8 -   6271500 CCTGGGCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5141314 8 +   5160157 CCTGGGCT
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1099220 8 +   1458659 CCTGGGCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       309750 8 +   4111199 CCTGGGCT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114227433 8 - 132174527 TCTAATTT
i calJac3.chr10             I 3 I 9
s saiBol1.JH378276            2884013 8 +   3282555 tctaattt
i saiBol1.JH378276          I 3 I 9
s otoGar3.GL873530            8728677 8 -  36342412 cttgggct
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56884866 8 + 124595110 TCTGGGTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1734763 8 -  40214260 ATCGGGCT
i canFam3.chr30             I 2 C 0
s dasNov3.JH572216             201163 8 -   1040364 attaGGCT
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1      2756274 38 -   3745603 I
e cebCap1.NW_016107979v1       836442 20 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7709865 0 +  58131712 C
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=1080.000000
s hg38.chr15_KI270850v1_alt    249915 1 +    430880 -c
s panTro5.chrY               25711575 1 -  26350515 -C
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       348443 1 +    378907 -C
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62594256 1 + 169600520 -C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106514648 1 - 171882078 -C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6248604 1 -   6271500 -C
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5141322 1 +   5160157 -C
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1099228 1 +   1458659 -C
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       309758 1 +   4111199 -C
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530            8728685 1 -  36342412 -c
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56884874 1 + 124595110 -C
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1734771 1 -  40214260 -C
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             201171 1 -   1040364 A-
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1      2756274 38 -   3745603 I
e calJac3.chr10             114227441 9 - 132174527 I
e cebCap1.NW_016107979v1       836442 20 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7709865 0 +  58131712 C
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2884021 9 +   3282555 I

a score=536388.000000
s hg38.chr15_KI270850v1_alt    249916 78 +    430880 cctgtccctgaacagttagcctggcttccttcagtgacctcgagaaactttgccaaacttagggggactgatcaacgg
s panTro5.chrY               25711576 78 -  26350515 CCTATCCCTGAACAGTTAGCCTggcttccttcagtgacctcaagaaactttgccaaacttaggggggctgatcaaggg
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       348444 78 +    378907 CCTATCCCTGAGCAGTTAGCCTggcttccttcagtgacctcgagaaactttgccaaacttagggggactgatcaaggg
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62594257 78 + 169600520 CCTATCCCTGAGCAGTTAGCCTGGCTTCCCTCAGTGACCTTGAAAAACTTTGCCAAACTTAGGGGGACTGATCAAGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106514649 78 - 171882078 CCTATCCCTGAGCAGTTAGCCTGGCTTCCCTCAGTGACCTTGAAAAACTTTGCCAAACTTAGGGGGACTGATCAAGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6248605 78 -   6271500 TCTATCCCTGAACAGTTAGCCTGGCTTCCTTCAGTGACCTCAAGAAACTTTGCCAAACTTAGGGGGACTGATCAAGGG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5141323 78 +   5160157 TCTATCCCTGAACAGTTAGCCTGGCTTCCCTCGGTGACCTTGAAAAACTTTGCCAAACTTAGGGGAACTGATCAAGGG
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1099229 78 +   1458659 CCTATCCCTGAGCAGCTAGCCTGGCTTCCCTCAGTGACCTTGAAAAACTTTGCCAAACTTAGGGGGACTGATCAAGGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       309759 78 +   4111199 CCTATCCCTGAACAGTTAGCCTGGCTTCCCTCAGTGACCTTGAAAAACTTTGCCAAACTTAGGGGGACTGATCAAGGG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114227450 78 - 132174527 CCTATCCCTGAACAGTGAGCCTGGCTGCCTTCAGTGACCCCAAGAAACTTTGCCCTGTTGAGGGGAACTGATCAAGGG
i calJac3.chr10             I 9 C 0
s saiBol1.JH378276            2884030 78 +   3282555 cctatccctgaacagggagcctggctgccttcagtgacctcaagaaactttgccttgttgagagggactgatcaaggg
i saiBol1.JH378276          I 9 C 0
s cebCap1.NW_016107979v1       836462 78 +   1024465 cctatccctgaacagtgaacctggctgccttcagtgaccccaagaaactttgccctgttgaggggcactgatcaaggg
i cebCap1.NW_016107979v1    I 20 C 0
s aotNan1.NW_018511953v1      2756312 78 -   3745603 TCTATCCCTGAACAGTGAGCCTggctgccttcagtgatcccaagaaactttgccctgttgagggggactgatcaaggg
i aotNan1.NW_018511953v1    I 38 C 0
s otoGar3.GL873530            8728686 77 -  36342412 cccattcctgaacagtgagcctGGCTACCTTCA-TGACCTCAACATGCTTTGTCCTGCTTAGAGGGACTCCTCAGAGA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56884875 53 + 124595110 -TTAGCCT---ACAGTGAGCCAAGCT--------------------ACTTTTGCGTACTAAGGGGG-TTCATTGGGGG
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1734772 32 -  40214260 -----CCC---GCCATGAGCCTAGCTGCCC-CGGTGACCCC-------------------------------------
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             201172 62 -   1040364 CCTGTCCC-------------Tggctgccctcagtgaccccaaggggctgtggccaactcgggccaac---tctggga
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7709865  0 +  58131712 C
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=471527.000000
s hg38.chr15_KI270850v1_alt    249994 56 +    430880 attctcagttacccattattcc-aggggtga---a---atctagattccaagacaatatttct
s panTro5.chrY               25711654 56 -  26350515 attctcagttacccattattcc-cggggtga---a---atctagattccaagacaatatttct
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       348522 56 +    378907 attctcagttacccattattcc-aggggtga---a---atctagattccaagacaatatttct
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62594335 55 + 169600520 ATTCTTAGTTACCCATTATTCC--GGGGTGA---A---ATCTAgattccaagacagtatttct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106514727 55 - 171882078 ATTCTTAGTTACCCATTATTCT--GGGGTGA---A---ATCTAgattccaagacagtatttct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6248683 56 -   6271500 ATTCTTAGTTACCCTTTATTCC-AGGGGTGA---A---ATCTAgattccaagacagtatttct
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5141401 56 +   5160157 ATTCTTAGTTACCCTTTATTCC-AGGGGTGA---A---ATCTAgattccaagacagtatttct
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7709865 56 +  58131712 ATTCCCAGTTACCTATTTTTCT-AGGGGTGA---A---ATCTAGATTCCAAGACAATATTTCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1099307 55 +   1458659 ATTCTTAGTTACCCATTATTCC--GGGGTGA---A---ATCTAgattccaagacagtatttct
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       309837 56 +   4111199 ATTCTTAGTTACCCATTATCCC-AGGGGTGA---A---ATCTAgattccaagacagtatttct
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114227528 56 - 132174527 ATTCCCAGTTACCCATTATTCC-AGGGTTGA---A---ATCCAGATTACAAAAAAATATTTCT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2884108 56 +   3282555 attcccggttacccattattcc-agggttga---a---atccagattccaagacaatatttct
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       836540 56 +   1024465 attcccaggtccccattattct-agggttga---a---atccagattccaagacaatatttct
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2756390 56 -   3745603 attcccagttacccattattcc-agggttga---a---atccagattacaagacaatatttct
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8728763 59 -  36342412 ATTCCCAGCTGTCCATTATTCC-AGGGATGAATTA---TTTTGGATTTAAAGGTGATTTTTCT
i otoGar3.GL873530          C 0 I 916
s mm10.chr9                  56884928 59 + 124595110 ATCCCAGAGTGCACATTACTCCCAGAGGTAG-TTT---TTCTAGAGCCCACAGTAGGTTTTCT
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1734804 51 -  40214260 ------AGATGCCCTCTATGCC-CAGAGTGA---A-TCTTCTGGAGGTCAAGGTGGT-TGTCT
i canFam3.chr30             C 0 I 3
s dasNov3.JH572216             201234 58 -   1040364 attcccaggtgcccgttattcc-agcggggg---agtcttcttgattccaaggcaatcttct-
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=325077.000000
s hg38.chr15_KI270850v1_alt    250050 40 +    430880 ggtgcttctcactcaaggaaagaggaggagaatttaaaaa
s panTro5.chrY               25711710 40 -  26350515 ggtgcttctctctcaaggaaagaggaggagaatttaaaaa
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       348578 40 +    378907 ggtgcttctcactcaaggaaagaggaggagaatttaaaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62594390 40 + 169600520 ggcacctctccctcaaggaaagagaaggagaatttaaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106514782 40 - 171882078 ggcacctctccctcaaggaaagagaaggagaatttaaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6248739 40 -   6271500 ggcacctctcactcaaggaaagagaaggagaatttaaaaa
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5141457 40 +   5160157 ggcacttctcactcaaggaaagagaaggagaattttaaaa
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7709921 40 +  58131712 GGCACCTCTCACTCGAGGAAAGAGGAGGAGAATTTAAAAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1099362 40 +   1458659 ggcacctctccctcaaggaaagagaaggagaatttaaaaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       309893 40 +   4111199 ggcgcctctcactcaaggaaagagaaggagaatttaaaaa
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114227584 40 - 132174527 GGCATCTCTCACTCAAGGAAAGAAGGGAAGAATTTAAAAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2884164 40 +   3282555 ggcatctctcactcaaggaaagaggggaagaatttaaaaa
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       836596 40 +   1024465 ggcatgtctcactcaaggaaagatgggaagaatttaaaAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2756446 40 -   3745603 ggcatctctcactcaaggaaagagaggaagaatttaaaaa
i aotNan1.NW_018511953v1    C 0 C 0
s mm10.chr9                  56884987 40 + 124595110 GGCACTGCTCACTGGAGAGAAGAGAGGAAGAAGGAGACCA
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1734858 37 -  40214260 GGCCCTGCCCCGTC--GGAAAGCTGGCGAGGGTAAAACA-
i canFam3.chr30             I 3 C 0
s dasNov3.JH572216             201292 37 -   1040364 ggcacttctcgcccaaggagaggggaagaaga---aaagg
i dasNov3.JH572216          C 0 C 0
e otoGar3.GL873530            8728822 916 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=1291922.000000
s hg38.chr15_KI270850v1_alt    250090 152 +    430880 tacaggttgggtttctagaagagcatcttgctatatg---tcagttccttgtgggcaaggaccacatctgattcacaccagggtccccagagcccatccaggcctggcccagagtttcctttggtgagtgtttggaggatgaataaaGAGATGGC
s panTro5.chrY               25711750 152 -  26350515 tacaggttgggtttctagaagagcatcttgctatatg---tcagttcattgtgggcaaggaccacatctgattcacatcagggtccccagagcccatccaggcctggcccagagtttcctttggtgagtgtttggaggatgaataaaGAGATGGC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       348618 152 +    378907 tacaggttgggtttctagaagagcatcttgctatatg---tcagttccttgtgggcaaggaccacatctgattcacaccagggtccccagagcccatccaggcctggcccagagtttcctttggtgagtgtttggaggatgaataaaGAGATGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62594430 152 + 169600520 tacaggttgggtttctagaagagcatcttgctatatg---tcagttccttgtgggcaaggagcacatctgattcacatcagggtccccagagcccattcaggcctggcccagagtttcctttggtgagtgtttggaggatgaataaaGAGATGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106514822 152 - 171882078 tacaggttgggtttctagaagagcatcttgctatatg---tcagttccttgtgggcaaggagcacatctgattcacatcagggtccccagagcccattcaggcctggcccagagtttcctttggtgagtgtttggaggatgaataaaGAGATGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6248779 152 -   6271500 tacaggttgggtttctagaagagcatcctgctatatg---tcagttccttgtgggcaaggagcacatctgattcacatcagggtccccagagcccattcaggcctggcccagagtttcctttggtgagtgtttggaggatgaataaaGAGATGGC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5141497 152 +   5160157 tacaggttgggtttctagaagagcatcttgctaTGtg---tcagttccttgtgggcaaggagcacatctgattcacatcagggtccccagagcccattcaggcctggcccagagtttcctttggtgagtgtttggaggatgaataaaGAGATGGC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7709961 150 +  58131712 T-CAGTTTGGATTTCTAGGAGAGCATcttactgtatg---tcagttccttgtgggccaggatcacatctgattcacatcacggtccccagagcccatccaggcctggcccagag-tccctttggtgagtgtttggaggatgagtaaaGAGATGGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1099402 152 +   1458659 tacagattgggtttctagaagagcatcttgctatatg---tcagttccttgtgggcaaggagcacatctgattcacatcagggtccccagagcccattcaggcctggcccagagtttcctttgatgactgtttggaggatgaataaaGAGATGGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       309933 152 +   4111199 tacaggttgggtttctagaagagcatcttgctaTGtg---tcagttccttgtgggcaaggagcacatctgattcacatcagggtccccagagcccattcaagcctggcccagagtttcctttggtgagtgtctggaggatgaataaaGAGATGGC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114227624 151 - 132174527 TACAGGTTGGATTTCTAGGAGAGCAccttgctgtatg---tcagttccttgtgggtg-ggaccacatctgattcacatcaggatccccagagcccatccaggcgtgacccagagttccctttggtgagtgtttggaggataagtaaaGAGATGGC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2884204 152 +   3282555 tacaggttggaatgctaggagagtatcttgctGTACG---TCATTTCCTTGTGGGTGAGGACCACATCCAATTCACATCAGGACCCCCGGAGCCCATCCAGGCCTGACCCAGAGTTCCCTTTAGTGAGTGTCTGGAGGAGAAGTAAAGAGATGGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       836636 155 +   1024465 TACAGGTTGGAATGCTAGGAGAGTATCTTGCTGTATGTCATCAGTTCCTTGTGGGCAAGGACCACATCTGATTCACATCAGGACCCCCAGAGCCCATCCAGGCCTGACCCAGAGTTCCTTTTGGTGAGTGTTTGGAGGATAAGTAAAGAGATGGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2756486 140 -   3745603 tacaggttggatttctaggagagcatcttgctGTATG---TCAGTTCCTTGTGGGCG-GGACCACATCCGATTCACATCAGGACCCCCAGACCCCATCCAGGCCTGACCCAGAGTTCCCTTTGGTGAGT-----------AAGTAAAGAGACGGC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8729738 152 -  36342412 TATAAGTTGATTTTCTAAGGGAGCATCTTACCATAtg---tcagttccttgtgggcagggaccacgtgtgattcacatgggggtccccagagtgtacccagaccaggcccaaggttcattttggtgagtgtttaggggaagaataaaGAGATGAC
i otoGar3.GL873530          I 916 C 0
s mm10.chr9                  56885027 105 + 124595110 GGCAAAGTATTGCTTCAGGGGAGAACCTTGCTTTGTG---TAAATCCCCAG-GGTCAGGGACAGTCTCTGAGCGACACTGG------------------------GGCCTTGACTCTCCCCAGTTGA--------------AACAAT--------
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1734895 109 -  40214260 TACAGACTGAATCCCTAGGAGAGCATCTTGCTCT--G---TCACTTC-------------------TCTGATTCACATCAGGGACCCCAGAGCCCATCTGGACCCG----------------------TGTTTGGGGGATAAGTAAAGAGGTGGC
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             201329  68 -   1040364 cctaagtggaatctcctggagggcgtcttgctaAATA---GCAGTTGCCTG-----------------------------------------------------------GGAGGTGCCTTGGG-------------------------GATGGC
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=113436.000000
s hg38.chr15_KI270850v1_alt    250242 11 +    430880 AGGAAGGCAAG
s gorGor5.CYUI01015946v1       348770 11 +    378907 AGGAAGGCAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62594582 11 + 169600520 AGGAAAGCAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106514974 11 - 171882078 AGGAAGGCAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6248931 11 -   6271500 AGGAAGGCAAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5141649 11 +   5160157 AGGAAGGCAAG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7710111 11 +  58131712 AGGATGGCAAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1099554 11 +   1458659 AGGAAGGCAAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       310085 11 +   4111199 AGGAAGGCAAG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114227775 11 - 132174527 AGGAAGGCAAG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2884356 11 +   3282555 AGGAAGGCAAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       836791 11 +   1024465 AGGAAGGCAAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2756626 11 -   3745603 AGGAAGGCAAG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8729890 10 -  36342412 -AGAAAGCAAG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56885132 11 + 124595110 AGGGAGCTAAG
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1735004 11 -  40214260 AGGAAGGAggg
i canFam3.chr30             C 0 I 188
s dasNov3.JH572216             201397 11 -   1040364 AGGAAGGCGAA
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=3905557.000000
s hg38.chr15_KI270850v1_alt    250253 425 +    430880 AGGAGTGGCACCAGAGGCCCTTGTCCTAGGTTTTCTGCTCTGGGGCCCC--CTGTGGGGAACCCACTGTGC-TTTTATAAGGGAAATGATGGATTCAAAGTGCTG-CCCCCCATCTCCCATTCC-CC--GTCTCTCCTCAGGTCAGGCTTGTCCTGGGCCAGGAGGAGCTGAGGCTGCAGACCCCAGCAGAAATTCTACTGAGTGGCTCCGTCCCCCACACCACAGTTCTGACTGTCTCAGAGGACTGGCCCACATTGTCAGTCAATGGGTTTCTGAATGCCTCCTCTGTAGTCCTGGGAG---CCCCCCTAGAAGTCCCCTATGGGCTCTTTGTTGGGAGCACTGGGAGACTTGGCCTGCCCTACCTGAGGGGAACCAGCCATCCCCTGAGGGGTTGCCTCCATGCAGCCGCTCTCAATGGCCGCAGACTCCTC
s gorGor5.CYUI01015946v1       348781 424 +    378907 AGGAGTGGCACCAGAGGTCCTTGTCCTAGGTTTTATGCTCTGGGGCCCC--CTGTGGGGAACCCACTGTGC-TTT-ATAAGGGAAATGATGGATTCAAAGTGCTG-CCCCCCATCTCCCATTCC-CT--GTCTCTCCTCAGGTCAGGCTTGTCCTGGGCCAGGAGGAGCTGAGGCTGCAGACCCCAGCAGAAATTCTACTGAGTGACTCCGTCCCCCACACTACAGTTCTGACTGTCTCAGAGGACTGGCCCACATTGTCAGTCAATGGGTTTCTGAATGCCTCCTCTGTAGTCCTGGGAG---CCCCCCTAGAAGTCCCCTATGGGCTCTTTGTTGGGAGCACTGGGAGACTTGGCCTGCCCTACCTGAGGGGAACCAGCCATCCCCTGAGGGGTTGCCTCCATGCAGCCGCTCTCAATGGCTGCAGACTCCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62594593 427 + 169600520 AGGAGTGGCACCAGAGGCCCTTGTCCTAGGTTTTCTGCTCTGGGGCCCCAACTGTGGGGAACCCACTGTGCGTTTTATAAGGGAAATGATGGATTCAAAGTGCTG-CCCCCCATCTCCCATTCC-CC--GTCTCTCCTCAGGTGAGACTTGTCCTGGGCCAGGAGGAGCTGAGGCTGCAGACCCCAGCAGAAATGCTGCTGAGCGACTCCATCCCCCACACTACGGTGCTGACTGTCTCAGAGGGCTGGGCCACATTGTCAGTTGATGGGTTTCTGAACGCCTCCTCTGCAGTCCTGGGAG----CCCCGTAGAAGTCCCCTGTGGGCTCTTCGTTGGGAGCATTGGGAGCCTTGGCCTGCCCTACCTGAGGGGAACCAGCTATGCCCTGAGAGATTGCCCCTATGCAGCCACCCTCAATGGCTGCAGCCTCCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106514985 427 - 171882078 AGGAGTGGCACCAGAGGCCCTTGTCCTAGGTTTTCTGCTCTGGGGCCCCAACTGTGGGGAACCCACTGTGCGTTTTATAAGGGAAATGATGGATTCAAAGTGCTG-CCCCCCATCTCCCATTCC-CC--GTCTCTCCTCAGGTGAGACTTGTCCTGGGCCAGGAGGAGCTGAGGCTGCAGACCCCAGCAGAAATGCTGCTGAGCGACTCCATCCCCCACACTATGGTGCTGACTGTCTCAGAGGGCTGGGCCACATTGTCAGTTGATGGGTTTCTGAACGCCTCCTCTGCAGTCCTGGGAG----CCCCGTAGAAGTCCCCTGTGGGCTCTTCGTTGGGAGCATTGGGAGCCTTGGCCTGCCCTACCTGAGGGGAACCAGCTATGCCCTGAGAGATTGCCCCTATGCAGCCACCCTCAATGGCTGCAGCCTCCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6248942 427 -   6271500 AGGAGTGGCACCAGAGGCCCTTGTCCTAGGTTTTCTGCTCTGGGGCCCCAACTGTGGGGAACCCACTGTGCGTTTTATAAGGGAAATGATGGATTCAAAGTGCTG-CTCCCCATCTCCCATTCC-CC--GTCTCTCCTCAGGTCAGACTTGTCCTGGGCCAGGAGGAGCTGAGGCTGCAGACCCCAGTAGAAATGCTGCTGAGCGACTTCGTGCCCCACACTACAGTGCTGACTGTCTCAGAGGGCTGGGCCACAGTGTCAGTTGATGGGTTTCTCAATGCCTCCTCTGCAGTCCTGGGAG----CCCCGTAGAAGTCCCCTGTGGGCTCTTCGTTGGGAGCATTGGGAGCCTTGGCCTGCCCTACCTGAGGGGACCCAGCTATCCCCTGAGAGATTGCCCCTATGCAGCCACTCTCAATGGCTGCAGCCTCCTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5141660 427 +   5160157 AGGAGTGGCACCAGAGGCCCTTGTCCTAGGTTTTCTGCTCTGGGGCCCCAACTGTGGGGAACCCACTGTGCGTTTTATAAGGGAAATGATGGATTCAAAGTGCTG-CCCCCCATCTCCCATTCC-CC--GTTTCTCCTCAGGTGAGACTTGTCCTGGGCCAGGAGGAGCTGAGGCTGCAGACCCCAGCAGAAATGCTGCTGAGCGACTCCATCCCCTACACTACAGTGCTGACTGTCTCAGAGGGCTGGGCCACACTGTCAGTTGATGGGTTTCTGAACGCCTCCTCTGCAGTCCTGGGAG----CCCCGTAGAGGTCCCCTGTGGGCTCTTCGTTGGGAGCATTGGGAGCCTTGGCCTGCCCTACCTGAGGGGAACCAGCTATCCCCTGAGAGATTGCCCCTATGCAGCCACCCTCAATGGCTGCAGCCTCCTC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7710122 427 +  58131712 AGGAGTGGCACCAGAGGCCCTCGTCCTAGGTTTTCCACTCTGGGGCCCCAAGTGTGGGGAATGCACTATGC-TTTTATAAGGGAAATGATGGATTCAAAATTCTG-TTCCCCATCTCCCACTCC-CC--ATCTCTCTTAAGGTCAGATTTGTCCTGAGCCAGGAGGAGCTGAAGCTACAGACCCCAGCAGAGAAGCTGCTGAGTAACTCCTTTGCCCATACTATGGTGCTGATTGTCGTAGAGGGCTGGGCCACATTGTCAGTTGATGGGTTTCTGAACGCCTCCTGTACAGTCGCAGGAG---CCCCCATAGAGGTCCCCTATGGGCTCTTTGTTGGGGGCACTGGGAGCCTTGGCCTGCCCTACCTGAGGGGAAGCAGCCGACCCCTGAGGGGTTGCCTCCATGCAGCCACCCTCAATGACTGCAGCCTCCTC
i chlSab2.chr26             C 0 I 10
s manLeu1.NW_012105520v1      1099565 427 +   1458659 AGGAGTGGCACCAGAGGCCCTTGTCCTAGGTTTTCTGCTCTGGGGCCCCAACTGTGGGGAACCCACTGTGTGTTTTATAAGGGAAATGATGGATTCAAAGTGCTG-CCCCCCATCTCCCATTCC-CC--GTTTCTCCTCAGGTGAGACTTGTCCTGGGCCAGGAGGAGCTGAGGCTGCAGACCCCAGCAGAAATGCTGCTGAGCGACTCCATCCCCCGCACTATGGTGCTGAATGTCTCAGAGGGCTGGGCCACACTGTCAGTTGATGGGTTTCTGAATGCCTCCTCTGCAGTCCTGGGAG----CCCCATAGAAGTCCCCTGTGGGCTCTTTGTTGGGAGCATTGGGAGCCTTGGCCTGCCCTACCTGAGGGGAACCAGCTATCCCCTGAGAGATTGCCCCTATGCAGCCACCCTCAATGGCTGCAGCCTCCTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       310096 427 +   4111199 AGGAGTGGCACCAGAGGCCCTTGTCCTAGGTTTTCTGCTCTGGGGCCCCAACTGTGGGGAACCCACTGTATGTTTTATAAGGGAAATGATGGATTCAAAGTGCTG-CCCCCCATCTCCCATTCC-CA--GTCTCTCCTCAGGTGAGACTTGTCCTGGGCCAGGAGGAGCTGAGGCTGCAGACCCCAGCAGAAATGCTGCTGAGCAACTCCATCCCCCACACTACCATGCTGACTGTCTCAGAGGGCTGGGCCACATTGTCAGTTGATGGGTTTCCGAACGCCTCCTCTGCAGTCCTGGGAG----CCCCCTAGAGGTCCCCTGTGGGCTCTTCGTTGGGAGCATTGGGAGCCTTGGCCTGCCCTATCTGAGGGGAATCAGCTATCCCCTGAGAGATTGCCCCTATGCAGCCACCCTCAATGGCTGCAGCCTCCTC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114227786 427 - 132174527 AGGAGTGGCACCAGAGGCCCTTGTCCTAGGTTTTCTGCTCTGGGGCTCCAACTGTGGGGAACCCACTATGC-TTTTATAAGGGAAATGATGGATTCAAAGTGCTG-TCCCCCATCTCCCATTCC-CT--GTCTCTCCTCAGGTCAGACTTGTCCTCAGCCAGGAGGAGCTGAGGCTGCAGACCCCAACAGAGATGCTGCTGAGTGACTCCATCCCCCACACTGCGGTGCTGACTGTCTCAGAGGGCTGGGCCACGTTGTCGGTTGATGGGCTTCTAAACGCCTCCTCTGCAGTCCCAGAAG---CCCCCCTAGAGGTCCCCTATGGGCTCTTTGTTGGGGGCACTGGGAGTCTTGGCCTGTCATACCTGAGGGGAACCAGCCGACCCCTGAGGGGATGCCTCCATGCAGCCACCCTCAATGGCCGCAGCCTCCTC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2884367 427 +   3282555 AGGAGTGACACCAGAGGCCCTTGTCCTGGGTTTTCCGCTCTGGGGCCCCAACTGTGGGGAACCCACTCTGC-TTTTATAAGGGAAATGATGGATTCAAAGTGCTG-TCTCCCGTCTCCCATTCC-CT--GTCTCTCCTCAGGTCAGACTCGTCCTCGGCCAGGAGGAGCTGAGGCTGCAGACCCCTGCAGAGACGCTGCTGAGTGACTCCCTCCCCCACACTGCGGTGCTGACCGTCTCAGACGGCTGGGCCACGCTGTCGGTCGACGGGCTTCTAAACGCCTCCTCTGCAGTCCCGGAAG---CCCCCCTAGAGGTCCCCTATGGGCTCTTCGTTGGGGGCACTGGGAGTCTTGGCCTGTCGTACCTGAGGGGAGCCAGCCGACCCCTGAGGGGGTGCCTCCATGCAGCCACCCTCAATGGCCGCAGCCTCCTC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       836802 426 +   1024465 AGGAGTGGCACCAGAGGCCCTTGTCCTA-CTTTTCCACTCTGGGGCCTCGACTGTGGGGAACCCACTACGC-TTTTATAAGGGAAATGATGGATTCAAAGTGCTG-TCCCCCATCGCCCATTCC-CT--GTCTCTCCTCAGGTCAGACTTGTCCTCGGCCAGGAGGAGCTGAGGCTGCAGACCCCAGCAGGGGTGCTGCTGAGTGACTCCATCCCCCACACTGCGGTGCTGACTATCTCAGAGGGCTGGGCCACGCTGTCGGTCGATGGGCTTCTAAACGCCTCCTCTGCAGTCCCAGAAG---CCCCCCTAGAGGTCCCCTACGGGCTCTTCGTTGGGGGCACTGGGAGTCTTGGCCTTTCGTACCTGAGGGGAGCCAGCCGGCCCCTGAGGGGGTGCCTCCATGCAGCCACCCTCAATGGCCGCAGCCTCCTC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2756637 427 -   3745603 AGGAGTGGCACCTGAGGCCCTTGTCCTGGGTTTTCTGCTCTGGGGCCCCAACTGTGAGGAACCCACTATGC-TTTTATAAGGGAAATGATGGATTCAAAGTGCTG-TCCCCCATCTGCCATTCC-CT--GTCTCTCCTCAGGTCAGACTTGTCCTTGGCCAGGAGGAGCTGAGGCTGCAGACACCAGCAGAGACACCGCTGAGTGACTCTATCCCCCACACTGCAGTGCTGACTGTCTCAGAGGGCTGGGCCACGTTGTCAGTCGATGGGCTTCTAAACGCCTCCTCTGCAGTCCCGGAAG---CCCCCCTAGAGGTCCCCTACGGGCTCTTTGTTGGGGGCACTGGGAGTCTTGGCCTGTCGTACCTGAGGGGAACCAGCCGACCCCTGAGGGGGTGCCTCCATGCAGCCACCCTCAATGGCCGCAGCCTCCTC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8729900 407 -  36342412 AGGGGTG----------------------GTTCTTTGCTCTGGCACTCCAAGGGTAGGG-ACCCACTATGC-TTTTATAAGGGAAGTTAGGGCTTTAATGTGCTATTCCCCCATCCCCCATTCC-CCTTATCTTTCCTCAGGTCAGATTGGTCCTGGGCCAAGAGGAGCTGAGGCTGCAGACCCCCGCAGAGACACTGCTAAGCGACTCCATCCCCCACACTGTGGTACTAACTGTTTCAGATAGCTGGGCCATGCTGTCAGTTGATGGGCTTCTGAACGCCTCTGCCCCAGTCCCAAAAG---TCCCCCTAAAGGTCCCCTATGGGCTCTTTGTGGGAGGCACTGGGAGTCTGGGCCTGCCCTACCTGAGGGGGACCAGCCGGCCCCTGAGAGGTTGCCTCCATGCAGCCACCCTCAATAGCCGCAGCCTCCTC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56885143 385 + 124595110 GG-------------------TGTCCCAG---------TCCGGGTT-----CTGAAGGGGGCTCAGTGTGG---------GGTAGACAGAAGTGTCA----GCCA-CTCCCACCCCTGACCTCT-CT--GTCTCTCTTCAGGTCAGACTTGCCCTGGGACAGAAGGAGCTAAAGCTGCAGACGCCAGCAGACACCGTGCTGAGTGACTCTGCCCCCCACACTGTAGTGCTCACTGTCTCCGACAGCTGGGCTGTGCTGTCTGTTGACGGAGTGTTGAACACCTCTGCTCCCATCCCAAGAGCATCCCACCTCAAGGCCACCTACGGGCTCTTCGTGGGCTCCTCTGGAAGCCTTGACCTGCCTTACCTGAAGGGAATCAGCCGACCCCTAAGGGGCTGCCTCCACTCAGCCATTCTCAATGGCCGCAACCTCCTC
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1735203 426 -  40214260 AGGGGTGGCATGAGAAACCTTTGTCCCAGGACGTCTGCTCTGGGGACTCCAATGTGGCCGACCAACTATGT-TCTTACAGGAGAAGCAGATCGTCCGAAGTGCTG-TCCCCA--CTCCCATCCCTCC--GTCTCTCCCCAGGTCAGACTCACCCTGGGCCAGGAGGAGCTGAGGCTGCAGACCCCAGCTGAGACTCCGCTGAGCGACTCCGCCGTCCACTCCGTGGAGCTGACTGTGTCAGACAGCGAGGCCTCGTTGTCCGTCGATGGGCTGCTGAACGCCTCAGCCCCCGTCCTGGGAG---CTCCCCTGGAGGTCCCCTATGGGATCTTCCTGGGGGGCACTGGGAGCCTGAGCCTGTCCTACCTGATGGGAGCCAGCCGGCCCCTGAGGGGCTGCCTGCACGCCGCCACCGTCAACGGCCGCAACCTCCTC
i canFam3.chr30             I 188 C 0
s dasNov3.JH572216             201408 389 -   1040364 AAGGGTGCCCTGCGGAGCCTTTGCCCTAGGTCCTT--CCCTGGGGATCCACGT---AGGAGACCGCTGTGC--------------------------------TG-ACCCCA--CCCCGACTCC-CC--GTCTCTCCCCAGGTCCGGCTCGTCCTGGGCCAGGAGGAGCTGAGGCTGCAGACCCCGGCGGAGACCCCGCTCAGCGACTCCGTCCCCCACGCTGTGGTCCTGTCCATGACAGACGGCTGGGCCACGCTGTCAGTGGATGGGCTCCTGAACAGCTCAGCCCCAGCCCCGGGGG---CCCCCCTGGACGTCCCCTATGGGCTCTTCGTGGGGGGCACCGGGAGCCTTGGTCTGCCCTATCTGAGGGGGGCCAGCCGGCCCCTGAGAGGTTGCCTCCATGCCGCCACCCTCAATGGCCGCAGCCTCCTC
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=5508794.000000
s hg38.chr15_KI270850v1_alt    250678 593 +    430880 CAGCCTCTGACCCCCAATAAGCATGAGGGCTGTGCTGAAGAGTTTTCTGCCAATGATGATGTGGCCCTGGGCTTCTCTGGGTCCCACTCTCTGGCTGCCTTGCCTGCCTGGGGCACTCAGGATGAAGGAACCCTGGAGTTTACACTCACCACACAGAGCTGGCAGGCACCCTTGGCCTTCCAGGCAGCAGGCTGGCATGGGGACTTCATCCATGTGGACATATTTGAGGGCCACCTGTGGTCCATGGTTGAGAAGGGCCAGGGTACTGTATTGCTCCTCAACAGTGTGCCTGTGACTGACGCACAGCCCCACAAGGTCAGCATCCACATCAACATTCACCAGCTAGAAATCTCCATGGACCAGTA-CCCCACACG-------AACTGAGGAGTCCTCAGCTACCTGGAGCCACGTGACAGTCTCCTTCTTGGGGAGCTGGTTGCAGAGGCCTCTCATCACCTCCAGGAACACCGCTCAGGCCTGACACCAGGGGCTGCCAATGCCTCCCTGCTGGGCTGGCTGCATGGAAGACCTCAGTGTCAATGGCTAGAGGCAGGGGCTGTGGGAAGCCTTGCTGACGCACAACATGGTGGCTGGCTG
s gorGor5.CYUI01015946v1       349205 600 +    378907 CGGCCTCTGACCCCCAATAAGCATGAGGGCTGTGCTGAAGAGTTTTCTGCCAATGACGATGTGGCCCTGGGCTTCTCTGGGCCCCACTCTCTGGCTGCCTTCCCTGCCTGGGGCACTCAGGATGAAGGAACCCTGGAGTTTACACTCACCACACAGAGCTGGCAGGCACCCTTGGCCTTCCAGGCAGCGGGCTGGCATGGGGACTTCATCCATGTGGACATATTTGAGGGCCACCTGTGGTCCATGGTTGAGAAGGGCCAGGGTACTGTATTGCTCCTCAACAGTGTGCCTGTGGCTGACGCACAGCCCCACAAGGTCAGCATCCACATCAACACTCACCAGCTAGAAATCTCCATGGACCAGTA-CCCCACACGTACTTTGAACCGAGGAATCCTCAGCTACCTGGAGCCACGTGACAGTCTCCTTCTTGGGGAGCTGGTTGCAGAGGCCTCTCATCACCTCCAGGAACACCGCTCAGGCCTGACACCAGGGGCTGCCAATGCCTCCCTGCTGGGCTGGCTGCATGGAAGACCTCAGTGTCAATGGCTAGAGGCGGGGGCTGTGGGAAGCCTTGCTGACGCACAACATGGTGGCTGGCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62595020 601 + 169600520 CGGCCTCTGACCCCCGAGGTGCGTGAGGGCTGTGCTGAAGAGTTTTCTGCCAGTGAGGATGTGGCACTGGGCTTCTCTGGGCCCCACTCTTTAGCTGCCATCCCTGCCTGGGGCACTCAGGATGAAGGAACCCTGGAGTTGACACTCACCACACAGAGCCAGCAGGCACCCTTGGCCTTCCAGGCAGGGGACCCGCATGGGGACTTCATCCATGTGGACATATTTGAGGGCCACCTGTGGGCCATGGTCGAGAAGGGCCAGGGTACTGCATTGCTCCTCAGCAGTGTGCCTGTGGCTGACAGGCAGCCCCACAAGGTCAGTGTCCACATCAACATTCACCAGCTGGAAATCTCCATGGACCAGTACCCCCACGTGTACTTCGAACCGAGGAGTCCTCAGCTACCTGGAGCCACGTGGCAGTCTCCTTCTTTGGGGGCTGGTTGCAGAGGCCTCTTGTCTCCTCCAGGAATACCGCCCAGACCTGACACGAGGAGCCGCCAATGCCTCACTGCTGGGATGGCTGCATGGAAGACCTCAGTGTCAATGGCCAGAGGCGGGGGCTGCGGGAAGCCTTGTTGACGCACAACATGGCGGCTggctg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106515412 601 - 171882078 CGGCCTCTGACCCCCGAGGTGCGTGAGGGCTGTGCTGAAGAGTTTTCTGCCAGTGAGGATGTGGCACTGGGCTTCTCTGGGCCCCACTCTTTAGCTGCCATCCCTGCCTGGGGCACTCAGGATGAAGGAACCCTGGAGTTGACACTCACCACACAGAGCCAGCAGGCACCCTTGGCCTTCCAGGCAGGGGACCCGCATGGGGACTTCATCCATGTGGACATATTTGAGGGCCACCTGTGGGCCATGGTCGAGAAGGGCCAGGGTACTGCATTGCTCCTCAGCAGTGTGCCTGTGGCTGACAGGCAGCCCCACAAGGTCAGTGTCCACATCAACATTCACCAGCTGGAAATCTCCATGGACCAGTACCCCCACGTGTACTTCGAACCGAGGAGTCCTCAGCTACCTGGAGCCACGTGGCAGTCTCCTTCTTGGGGGGCTGGTTGCAGAAGCCTCTTGTCACCTCCAGGAATACCGCCCAGACCTGACACGAGGAGCCGCCAATGCCTCACTGCTGGGATGGCTGCATGGAAGACCTCAGTGTCAATGGCCAGAGGCGGGGGCTGCGGGAAGCCTTGTTGACGCACAACATGGCGGCTGGCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6249369 601 -   6271500 CGGCCTCTGACCCCCGAGGTGCGTGAGGGCTGTGCTGAAGAGTTTTCTGCCAGTGAGGATGTGGCACTGGGCTTCTCTGGGCCCCACTCTTTAGCTGCCGTCCCTGCCTGGGGCACTCAGGATGAAGGAACCCTGGAGTTGACACTCACCACACAGAGCCAGCAGGCACCCTTGGCCTTCCAGGCAGGGGACCCGCATGGGGACTTCATCCATGTGGACATATTTGAGGGCCACCTGTGGGCCATGGTCGAGAAGGGCCAGGGTACTGCATTGCTCCTCAGCAGTGTGCCTGTGGCTGACAGGCAGCCCCACAAGGTCAGTGTCCACATCAACATTCACCAGCTGGAAATCTCCATGGACCAGTACCCCCACGTGTACTTCGAACCGAGGAGTCCTCAGCTACCTGGAGCCACGTGGCAGTCTCCTCCTTTGGGGGCTGGTTGCAGAGGCCTCTTGTCTCCTCCAGGAATACCGCCCAGACCTGACACGAGGAGCCGCCAATGCCTCCCTGCTGGGATGGCTGCATGGAAGACCTCAGTGTCAATGGCCAGAGGCGGGGGCTGCGGGAAGCCTTGTTGACGCACAACATGGCGGCTGGCTG
i macNem1.NW_012011056v1    C 0 I 446
s cerAty1.NW_012001384v1      5142087 600 +   5160157 CGGCCTCTGACCCCCGAGGTGCGTGAGGGCTGTGCTGAAGAGTTTTCTGCCAGTGAGGATGTGGCACTGGGCTTCTGTGGGCCCAACTCTTTAGCTGCCGTCCCTGCCTGGGGCACTCAGGATGAAGGAACCCTGGAGCTGACACTCACCACACAGTGCCAGCAGGCACCCTTGGCCTTCCAGGCAGGGGACCCGCATGGGGACTTCATCCATTTGGACATATTTGAGGGCCACCTGTGGGCCATGGTCGAGAAGGGCCAGGGTACTGCATTGCTCCTCAGCAGTGTGCCTGTGGCTGACAGGCAGCCCCACAAGGTCAGTGTTCACATCAACATTCACCAGCTGGAAATCTCCATGGACCAGTA-CTCCACATGTACTTTGAACTGAGGAGTCCTCAGCTACCTGGAGCCACGTGGCAGTCTTCTTCTTTGGGGCCTGGTTGCAGAGGCCTCTTGTCACCTCCAGGAATACCGCCCAGACCTGACACGAGGAGCCGCCAATGCCTCACTGCTGGGATGGCTGCATGGAAGACCTCAGTGTCAATGGCCAGAGGCGGGGGCTGCGGGAAGCCTTGTTGACGCACAACATGGCGGCTGGCTG
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1099992 601 +   1458659 CAGCCTCTGACCCCCGAGGTGCATGAGGGCTGTGCTGAAGAGTTTTCTGCCAGTGAGGATGTGGCACTGGGCTTCTGTGGGCCCCACTCTTTAGCTGCCGTCCCTGCCTGGGGCACTCAGGATGAAGGAACCCTGGAGTTGACACTCACCACACAGAGCCAGCAGGCACCCTTGGCCTTCCAGGCAGGGGACCCACATGGGGACTTCATCCATGTGGACATATTTGAGGGCCACCTGTGGGCCATGGTCGAGAAGGGCCAGGGTACTGCATTGCTCCTCAGCAGTGTGCCTTTGGCTGACAGGCAGCCCCACAAGGTCAGTGTCCACATCAACATTCACCAGCTGGAAATCTCCATGGACCAGTACCCCCACGTGTACTTCGAACCGAGGAGTCCTCAGCTACCTGGAGCCACGTGGCAGTCTCCTTCTTGGGGGGCTGGTTGCAGAGGCCTCTTGTCACCTCCAGGAATACCGCCCAGACCTGACACGAGGAGCCACCAATGCCTCCCTGCTGGGATGGCTGCATGGAAGACCTCAGTGTCAATGGCCAGAGGCGGGGGCTGCGGGAAGCCTTGTTGACGCACAACATGGCGGCTGGCTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       310523 592 +   4111199 TGGCCTCTGACCCCCGACATGCGTGAGGGCTGTGCTGAAGAGTTTTCTGCCGGTGAGGATGTGGCCCTGGGCTTCTCTGGGCCCAACTCTTTAGCTGCCGTCCCTGCCTGGGGCACTCAGGATGAAGGAATCCTGGAGTTGACACT-----CACAGGGCCAGCAGGCACCCTTGGCCTTCCAGGCAGGGGACCCGCATGGGGACTTCATCCATGTGGACATATTTGAGGGCCACCTGTGGGCCATGGTCGAGAAGGGCCAGGGTACTGCATTGCTCCTCAGCAGTGTGCCTGTGGCTGACAGGCAGCCCCACAAGATCAGTGTCCACATCAACATTCACCAGCTGGAAATCTCCATGGACCAGTA-CCCCACATGTACTTCGAACCGAGGAGTCCTCAGCTACCTGGAGCCACGTGGCAGTCTTCTTCTTGGGGGGCTGGTTGCAGAGGCCTCTTGTCACCTCCAGGAATACCGCCTAGACCTGACAC---GAGCCGCCAATGCCTCCCTGCTGGGATGGCTGCATGGAAGACCTCAGTGTCAATGGCCAGAGGCAGGGGCTGCGGGAAGCCTTATTGACACACAACATGGCGGCTGGCTG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114228213 596 - 132174527 CAGCCTCTGACGCCTGACGTGCATGAAGGCTGTGCTGAAGAGTTTTCTGCTGGTGATGATGTGGCCCTGGGCTTCTCCGGGCCCCACTCTCTGGCTGCCTTCCCTGCGTGGGGCACTCAGGATGAAGGAACCCTGGAGTTTATACTCACTACACGGAGCCGGCAGGCACCCTTGGCCTTCCAGGCAGGCGGCCGGCATGGGGACTTCATCTATGTGGACATATTTGAGGGCCACCTGCGGGCCGTGGTTGAGAAGGGCCAGGGTACCATACTGCTACACAACAGTGTACCTGTGGCCGATGGGCAGCCCCACGAGGTCAGTGTCCACATCAATGCTCACCAGCTGGAAATCTCTGTGGACCAGTA-CCCGACACGTACTTCGAACCGTGGCGTCCTCAGCTACCTGGAGCCACGCGGCAGTCTCATTCTTGGGGGGCTGGATGCAGAGGCCTCTCATCACCTCCAGGAACACCGCCTGGGCCTGACGCCAGGGGCCACCAATGCCTCCCTCCTG----GGCTGCATGGAAGACCTCAGTGTCAATGGCCAGAGGTGAGGGCTGCGGGAAGCATTGCTGACACGTGACATGGCAGCTGGCTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2884794 596 +   3282555 CGGCCTCTGACCCCCGACGTGCATGAGGGCTGTGCTGAAGAGTTTTCTGCTGGTGATGATGTGACCCTGGGCTTCTCCGGGCCCCACTCTCTGGCTGCCTTCCCTGCATGGAGCACTCAGGATGAAGGAACCCTGGAGTTCATACTCACCACACGGAGCCGGCAGGCTCCCTTGGCCTTCCAGGCAGGGGGCAGGCATGGGGACTTCATCTATGTGGACATATTTGAGGGCCACCTGCGGGCTGTGGTCGAGAAGGGCCAGGGTACCGTACTGCTCCACAACAGTGTACCTGTGGCCGATGGGCAGCCCCATGAGGTCAGCGTCCACATCAATGCTCAGCAGCTGGAAATCTCCGTGGACCAGTA-CCCCACGCGTACTTCGAACCGTGGGGTCCTCAGCTACCTGGAGCCACGCGGCAGTCTCCTCCTCGGGGGGCTGGATGCAGAGGCCTCTCGTCACCTCCAGGAACACCGCCTGGGCCTGACGCCAAGCGCCACCAATGCCTCCCTCCTG----GGCTGCATGGAAGACCTCAGTGTCAATGGCCAGAGGTGGGGGCTGCGGGAAGCCGTGCTGACCCGTGACATGGCGGCCGGCTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       837228 596 +   1024465 CGGCCTCTGACCCCCGACGTGCATGAGGGCTGTGCTGAAGAGTTTTCTGCTGGTGATGATGTGGCCCTGGGCTTCTCCGGGCCCCACTCTCTGGCTGCCTTCCCTGCGTGGGGCACTCAGGATGAAGGAACCCTGGAGTTTATACTCACCACACGGAGCCGGCAGGCACCCTTGGCCTTCCAGGCAGGGGGCCGGCATGGGGACTTCATCTATGTGGATGTATTTGAGGGCCACCTGCGGGCTGTGGTCGAGAAGGGCCAGGGTACCGTACTGCTCCACAACAGCGTACCTGTGGCCGATGGGCAGCCCCACGAGGTCAGTGTCCACATCAATGCTCACCAGCTGGAAATTTCCGTGGACCAGTA-CCCCACGCGTACTTCAAACCGCGGTGTCCTCAGCTACCTGGAGCCACGTGGCAGTCTCCTTCTTGGGGGGCTGGATGCAGAGGCCTCTCGTCACCTCCAGGAACACCGCCTGGGCCTGACGCCAGGGGCCACCAATGCCTCCCTCCTG----GGCTGCATGGAAGACCTCAGTGTCAATGGCCAGAGGTGGGGGCTGCGGGAAGCTGTGCTGACACGTGACATGGCGGCCGGCTG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2757064 596 -   3745603 CAGCCTCTGACCCCCGACGTGCATGAGGGCTGTGCTGAAGAGTTTTCTGCTGGTGATGATGTGGCCCTGGGCTTCTCCGGGCCCCACTCTCTGGCTGCCTTCCCTGCATGGGGCACTCAGGATGAAGGAACCCTGGAGTTTATACTCACCACACGGAGCCGGCAGGCACCCTTGGCCTTCCAGGCAGGGGGCCGGCATGGGGACTTCATCTATGTGGACATATTTGAGGGCCACCTGCGGGCTGTGGTTGAGAAGGGCCAGGGTACCGTACTGCTCCACAACAGTGTACCTGTGGCCGACGGGCAGCCCCACGAGGTCAGTGTCCACATCAATGCTCACCAGCTGGAAATCTCCGTGGACCAGTA-CCCCACGCGTACTTCGAACCGTGGCGTCCTCAGCTACCTGGAGCCACGCGGCAGTCTCCTTCTCGGGGGGCTGGATGCAGAGGCCTCTCATCACCTCCAGGAACACCGCCTGGGCCTGACACCAGGGGCCGCCAATGCCTCCCTCCTG----GGCTGCATGGAAGACCTCAATGTCAATGGCCAGAGGTGGGGGCTGCGGGAAGCCTTGCTGACACGTGACATGGCGGCTGGCTG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8730307 596 -  36342412 CGGCCACTGACCCCAGATGTGCATGAGGGATGTGCCGAAGAGTTTTCTGCTGGTGATGATGTGGCCCTTGGCTTCTCCGGTCCCCACTCTCTGGCTGCCTTCCCTGCGTGGGCCACTCAAGACGAAGGCACCCTGGAGTTTATACTCACGACACGGAGCCAGCAGGCACCCTTGGCCTTCCAGGCAGGGGGCCGGCATGGGGACTTCATCTATGTGGACATATTTGAAGGCCATCTGCGGGCTGTGGTTGAGAAGGGCCAAGGTACTGTGCTGCTCCACAACAGTGTGCCTGTGGCTGATGGACAGCCCCATGAGGTCACCGTCCACATAGATGCTCACCAGCTGGAAATCTCTGTGGACCAGTA-CCCCACACGTACTTCTAACCGTGGGGTCCTCAGCCACCTGGAGCCACGTGGCAGCCTTCTCCTCGGGGGGCTGGATGCAGAGGCCGCTCGTCACCTCCAGGAACACCGCTTGGGCCTGACTCCAGAGGCTGCCAACGCCTCCCTCCTG----GGCTGCATGGAAGACCTCAGCATCAACGGCCAGAGGAAGGGGCTCCGGGAAGCCTTATTGACTCGTGACATGGCTGCCGGCTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56885528 596 + 124595110 CGTCCGCTGACCTCCGATGTTCATGAAGGTTGTGCTGAAGAATTCTCTGCTGGTGATGAAGTGGGCCTGGGCTTCTCTGGGCCCCACTCACTGGCTGCCTTCCCTGCCTGGAGCACTCGGGAGGAAGGCACCCTGGAGTTTACGCTCACCACTCGGAGTCAGCAAGCACCCCTGGCCTTCCAAGCAGGGGACAAGCGTGGCAACTTTATCTACGTGGACATATTTGAGGGCCACTTGCGGGCTGTGGTTGAGAAAGGCCAAGGTACCATGCTACTCCGCAACAGCGTGCCTGTGGCTGATGGGCAGCCCCACGAGGTCAGCGTACACATAGATGTTCACCGGCTGGAAATCTCTGTAGACCAATA-CCCTACGCGTACTTTCAACCGTGGGGTCCTCAGCTACCTGGAGCCACGTGGCAGTCTCCTCCTTGGGGGTCTGGACACAGAAGCCTCTCGCCACCTCCAAGAGCACCGTCTGGGCCTGGCACCGGGGGCTGCCAATATCTCCCTGGTA----GGCTGCATAGAAGATTTCAGTGTTAATGGCAGGAGGCAGGGCCTCCGGGATGCCTGGCTGACCCGTGACATGTCAGCAGGATG
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1735629 596 -  40214260 CGACCACTGACCCCTGACGTGCACGAGGGCTGCGCTGAAGAGTTTTCTGCTGATGACAGCGTGGCTCTGGGCTTCTCTGGGCCCCACTCGCTGGCTGCCTTCCCTGCCTGGAACACTCGGGAGGAGGGCACCCTGGCGTTCATACTCACCACTCGGAGCCGACAGGCGCCCCTGGCTTTCCAGGCGGGCGGCCGGCACGGGGATTTCATCTACGTGGACATATTTGAGGGCCACCTGCGGGCTGTGGTGGAGAAGGGCCAGGGCACCGTGTTGCTCCACAACAGCGTGCCCGTGGCTGACGGGCTACCCCATGAGGTCAGTGTCCACGTGGATGCTCACCAGCTGGAAATCTCCGTGGACCAGTA-CCCCACACGGACTTCCAACCGTGGGATCCTCAGCTACCTGGAACCCCGCGGCAGTCTCCTCCTGGGGGGGCTGGACACAGAGGCCTCCCGCCACCTCCAGGAACACCGCCTGGGCCTGGCCTCGGGGGCCGTCAACGTCTCCCTCCTG----GGCTGCATGGAGGATCTCAGCATCAACGGCCAGAGGCAGGGGCTCCGGGAAGCCTCGCTGACTCGCAGCATGGTGGCCGGCTG
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             201797 596 -   1040364 CAGCCACTGACCGCAGACGTGCTTGAGGGCTGTGCCGAAGAGTTTTCTGCCAGTGCCAACGTGGCCCTGGGCTTCCCGGGGCCCCACTCCCTGGCTGCCTTCCCTGCCTGGAGCACCCGGGACGAGGGCACCCTGGAGTTTACGCTCACCACCAGGAGCCGGCAGGCGCCCCTGGCCTTCCAGGCGGGGGGCCGGCGCGGGGACTTCATCTACGTGGACATCTTCGAGGGTCACCTGCGGGCCGTGGTCGAGAAGGGCCAGGGCACAGTACTGCTGCACAACAGCGTGCCCGTGGCCGACGGGCAGCCCCACGAGGTCAGCATCCACGTGGACACCCACCGGCTGGAAATCTCCGTGGACCAGTA-CCCCACACGTACATCCAACCGGGGGGTCCTCAGCTACCTGGAGCCACGGGGCAGTCTCCTCCTTGGGGGCCTGGACGCAGAGGCCTCTCGCCACCTCCAGGACCACCGCCTGGGCCTGGCCCCTGGGGTCACCAACGCCTCCCTGCTG----GGCTGCATGGAGGACCTCAGCGTCAACGGCCAAAGGCAGGGGCTCCGGGAAGCCGTGCTGACGCGCGACATGGCAGCCGGCTG
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7710549  10 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=1865573.000000
s hg38.chr15_KI270850v1_alt    251271 240 +    430880 CAGACTGGAGGAGGTAGA------------CAATGCCTATGGCCATTATGAAGCTTTCTCCACCCTGGCTCCCAAGGCTTGGCTGTCCGTGGAGCTAGCTGAGCCATGCGTGCCTGAGCCAGGGCTACCTCCTGTCTTTGCCAATTTCATCCAGCTG----CTATCAGCGCAGTGGTGGTGACCGAGGGTGGCACAGCCTGGCTTGAGTGGTGGCATGTGCAGCCCATGCTGGCACTGATGGAGGCTGAACTGCGT
s gorGor5.CYUI01015946v1       349805 251 +    378907 CAGACTggaggaggtggaggagtatgaggaCAATGCCTATGGCCATTATGAAGCTTTCTCCACCCTGGCTCCCGAGGCTTGGCTGTCCGTGGAGCTAGCTGAGCCATGCGTGCCTGAGCCAGG-CTACCTCCTGTCTTTGCCAATTTCATCCAGCTG----CTATCAGCGCAGTGGTGGTGACCAAGGGTGGCACAGACTGGCTTGAGTGGTGGCATGTGCAGCCCATGCTGGCACTGATGGAGGCTGAACTGTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62595621 253 + 169600520 -agggtggaggaggtggaggagtatgaggatgaTGCCTGTGACCATTATGAAGCTTTCTCCATGCTGGCCCCCAAGAGTTGGCTGGCCATGGAGCTAGCTGAGCCATGAGTGCCTGAGCTAGGGCTGCACCCTGTC--TGCTAATTTCACCCAGCTGTTGACTGTCTGCCCACTGGTGGTGGCTGAGGGTGGCACAGCCTGGCTTGAGTGGCAGCACGTGCAACCCATGCTGGCCCTGATGGAGGCTGAGCTGCGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106516013 253 - 171882078 -AGggtggaggaggtggaggagtatgaggatgaTGCCTGTGACCATTATGAAGCTTTCTCCATGCTGGCCCCCAAGACTTGGCTGGCCATGGAGCTAGCTGAGCCATGAGTGCCTGAGCTAGGGCTGCACCCTGTC--TGCTAATTTCACCCAGCTGTTGACTGTCTGCCCACTGGTGGTGGCTGAGGGTGGCACAGCCTGGCTTGAGTGGCAGCACGTGCAACCCATGCTGGCCCTGATGGAGGCTGAGCTGCGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5142687 254 +   5160157 AAGGCTggaggaggtggaggagtatgaggatgaTGCCTGTGACCATTATGAAGCTTTCTCCATGCTGGCCCCCAAGACTTGGCTGGCCATGGAGCTAGCTGAGCCATGAGTGCCTGAGCTAGGGCTGCACCCTGTC--TGCTAATTTCACCCAGCTGTTGACTATCTGCCCACTGGTGGTGGCTGAGGGTGGCACAGCCTGGCTTGAGTGGCAGCACGTGCAACCCATGCTGGCCCTGATGGAGGCTGAGCTGCAC
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1100593 254 +   1458659 AGGGCTggaggaggtggaggagtatgaggacgaTGCCTGTGACCGTTACGAAGCTTTCTCCATGCTGGCCCCCAAGGCTTGGCTGGCCATGGAGCTAGCTGAGCCATGCGTGCCTAAGCTAGGGCTGCACCCTGTC--TGCTAATTTCACCCAGCTGTTGACTGTCTGCCCACTGGTGGTGGCTGAGGGTGGCACAGCCTGGCTTGAGTGGCAGCACGTGCAACCCATGCTGGCCCTGATGGAGGCTGAGCTGCGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       311115 254 +   4111199 AAGGCTggaggaggtggaggagtatgaggatgaTGCCTGTGACCATGATGAAGCTTTCTCCATGCTGGCCACCAAGGCTTGGCTGGCCATGGAGCTAGCTGAGCCATGCGTGCCTGAGCTAGGGCTGTACCCTGTC--TGCTAATTTCACCCAGCTGTTGACTATCTGCCCACTAGTGGTGGCTGAGGGTGGCCCAGCCTGGCTTGAGCGGCAGCATGTGCAACCCATGCTGGCCCTGATAGAGGCTGAGCTGCGC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114228809 253 - 132174527 CAGGCTAGAGGAG---GAGGAGTACGAGGACGATGCCTATGGCCATTATGAAGCTTTCTCCACCCTGGCCCCCGAGGCTTGGCCGGCCATGGAGCTGCCTGAGCCATGTGTGCCTGAGCCTGGGCTGCCTCCTGTTTTTGCCAATTTCACCCAGCTTCTGACCATCAGCCCACTGGTAGTGGCCGAGGGCGGCACAGCCTGGCTTGAGTGGCGACACGTGCAGCCCACGCTGGACCTGATGGAGGCTGACCTGCGC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2885390 253 +   3282555 CAGGCTGGAGGAG---GAGGAGTATGAGGACGATGCCTACGGCCATTACGAAGCTTTCTCCACCCTGGCCCCCGAGGCTTGGCCGGCCATGGAGCTGCCTGAGCCATGTGTGCCTGAGCCTGGGCTGCCTCCTGTTTTTGCCAATTTCACTCAGCTGCTGACCGTCAGCCCGCTGGTAGTGGCCGAGGGCGGCACAGCCTGGCTTGAGTGGCGACACGTGCAGCCCACGCTGGACCTGATAGAGGCTGAGCTGCGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       837824 253 +   1024465 CAGGCTggaggag---gaggagtatgaggacgaTGCCTACGGCCATTATGAAGCTTTCTCCACCCTGGCCCCCGAGGCTTGGCCGGCCCTGGAGCTGCCTGAACCGTGTGTGCCTGAGCCTGGGCTGCCTCCTGTTTTTGCCAATTTCACCCAGCTGCTGACCATCAGCCCACTGGTCGTGGCCGAGGGCGGCATAGCCTGGCTTGAGTGGCGACACGTGCAGCCCACGCTGGACTTGATGGAGGCTGAGCTGCGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2757660 253 -   3745603 CAGGCTggaggag---gaggagtacgaggacgaTGCCTACGGCCATTATGAAGCTTTCTCCACCCTGGCCCCCGAGGCTTGGCCGGCCATGGAGCTGCCTGAGCCATGTGTGCCTGAGCCTGGGCTGCCTCCTGTTTTTGCCAATTTCACCCAGCTGCTGACCATCAGCCCACTGGTAGTGGCCGAGGGCGGCACAGCCTGGCTTGAGTGGCGACATGTGCAACCCACGCTGGACCTGATGGAGGCTGAGCTGCGC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8730903 253 -  36342412 CAAGCTGGAGGAA---GAGGAGTATGAGGAGGACGTCTATGGCCTTTATGAAGCTTTCTCCACTCTGGCCCCCGAGGCTTGGCCAGCTATGGAGCTGCCTGAGCCATGTGTGCCTGAGCCAGGGCTGCCTCCTATCTTTGCCAATTTCACCCAGCTGCTGACCATCAACCCACTAGTGGTAGCTGAGGGTGGCACAGCCTGGCTTGAGTGGCGGCACGTGCAGCCCACACTGGACCTGACCGAGGCCGAGCTGCGC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56886124 253 + 124595110 CAGGCCTGAGGAG---GATGAATATGAAGAAGAGGTCTATGGCCCATATGAAACTTTCTCCACCCTGGCACCAGAAGCTTGGCCAGCCATGGAACTGCCAGAGCCATGTATTCCTGAGCCGGGACTGCCTGCTGTCTTTGCAAACTTCACCCAGCTGCTTACCATCAGCCCCCTGGTGGTGGCCGAGGGTGGCACGGCCTGGCTTGAGTGGCGGCACGTGCAGCCCACCCTGGACCTGACAGAGGCAGAGCTGCGC
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1736225 253 -  40214260 CAGCCTGGAGGAA---GACGAGTACGAGGAGGACACCTACGGCACCTATGAAGCTCTCTCCACCCTGGCACCGGAGGCCTGGTCCGCCGTGGAGCTGCCCGAGCCCTGCGTGCCCGAACCGGGGCTGCCTCCCGTCTTTGCCAACTTCACCCAACTGCTGACTGTCAGCCCGCTGGTGGTGGCCGAGGGGGGCACAGCCTGGCTTGAGTGGCGGCACCTGCAGCCCACGCTGGACCTGAGCGAGGCCGAGCTGCGT
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             202393 253 -   1040364 CGGGCTGGAGGAA---GACGAGTACGAGGAGGACGCCTACGGCCCGTATGAAGCGCTCTCCACCCTGGCGACTGAGGCCTGGCCAGCCGTGAAACTGCCTGAGCCCTGCGTGCCTGAACCGGGGCTGCCTCCCATCTTTGCCAATTTCACCCAACTGCTGACCATCAGCCCCCTGGTGGTGGCTGAGGGTGGCACAGTCTGGCTGGAGTGGCGCCACGTGCAGCCCACGCTGGACCTGAGCGAGGCAGCGCTGCGC
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7710549  10 +  58131712 I
e macNem1.NW_012011056v1      6249970 446 -   6271500 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=1752743.000000
s hg38.chr15_KI270850v1_alt    251511 193 +    430880 AAATCCCAGGTGCTG-----------------TTCAGCGTGACCTGAGGGGCACACTACAGCGAGCTCGAGCTGGATGTCCTGGGTGCCCAGGCATGAAAAATGTTCACCCTCCTGGACGTGGTGAACTGCAAGGCCCGCTTCATCCACGATGGCCCTGAGGACACCTCTGACCAGCTGGTGCTGGAGGTGTCAGTGATGGCTTGGTTGC
s gorGor5.CYUI01015946v1       350056 210 +    378907 ATTTCCCAGGTGCTGGGATTTCCCAGGTGCTGTTCAGCGTGACCTGAGGGGCACACTACAGCAAGCTCGAGCTGGATGTCCTGGGTGCCCAGGCATGAAAAATGTTCACCCTCCTGGACATGGTGAACTGCAAGGCCCGCTTCATCCACGATGGCCCTGAGGACACCTCTGACCAGCTGGTGCTGGAGGTGTCAGTGATGGCTTGGGTGC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62595874 193 + 169600520 ACATCCCAGGTGCTG-----------------TTCAGCGTGACCTGAGGGGCATGCTAGGGCGAGGTTGAACTGGACATCCCGGGTGCCCAGGCATGAAATATGTTCACCCTCCTGGACATGGTGAACCACAAGGCCTGCTTCATCCACGATGGCCCTGAGGACACCTCTGACCAGCTGGTGCTAGAGGTGTCAGTGATGGCTCTGGTGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106516266 193 - 171882078 ACATCCCAGGTGCTG-----------------TTCAGCGTGACCTGAGGGGCATGCTAGGGCGAGGTTGAACTGGACATCCCGGGTGCCCAGGCATGAAAAATGTTCACCCTCCTGGACATGGTGAACCACAAGGCCTGCTTCATCCACGATGGCCCTGAGGACACCTCTGACCAGCTGGTGCTAGAGGTGTCAGTGACGGCTCTGGTGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      5142941 193 +   5160157 ACATCCCAGGTGCTG-----------------TTCAGCGTGACCTGAAGGGCATGCTAGGGCGAGGTTGAACTGGACATCCCGGGTGCCCAGGCATGAAAAATGTTCACCCTCCTGGACATGGTGAACCACAAGGCCTGCTTCATCCACGATGGCCCTGAGGACACCTCTGACCAGCTGGTGCTAGAGGTGTCAGTGACGGCTCTGGTGC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7710559 185 +  58131712 AAATCCCAGCTGCTG-----------------TTCAGCGTGACCCAAGGGGCACGTGACGGTGAGCTCAAG--------CCCGGGCGCCCAGGCACAAAAAATATTCACCCTCCTGGACGTGGTGAACCGCAAGGCCCGCTTCATCCACGATGGCTCTGAGGACACCTCCGACCAGCTGGTGCTGGAGGTGTCAGTGATGGCTCGGGTGC
i chlSab2.chr26             I 10 C 0
s manLeu1.NW_012105520v1      1100847 193 +   1458659 ACATCCCAGGTGCTG-----------------TTCAGCGTGACCTGAGGGGCATGCTAGGGTGAGGTAGAACTGGACATCCCGGGTGCCCAGGCATGAAATATGTTCACCCTCCTGGACATGGTGAACCGCAAGGCCTGCTTCATCCATGATGGCCCTGAGGACAGCTCTGACCAGCTGGTGCTAGAGGTGTCAGTGATGGCTCTGGTGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       311369 193 +   4111199 ACATCCCAGGTGCTG-----------------TTCAGCGTGACCTGAGGGGCATGCTAGGGCGAGCTTGAACTGGACATCCCGGGTGCCCAGGCATGAAAAATGTTCACCCTCCTGGACATGGTGAATTGCAAGGCCTGCTTCATCCACGATGGCCCTGAGGACACCTCTGACCAGCTGGTGCTAGAGGTGTCTGTGACGGCTCTGGTGC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114229062 193 - 132174527 AAGTCTCAGGTACTG-----------------TTCAGTGTGACCCGAGGAGCACGCCACGGCGAGCTCGAGCTGGACATCCCGGGTGCTCAGGCACGAAAAATGTTCACCCTGCTGGACGTGGTGAACCGCAAGGCCCGCTTCATCCACGATGGCTCTGAGGACACCTCCGACCAGCTGGTGCTGGAGGTGTCAGTGACGGCTCGGGTGC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2885643 193 +   3282555 AAGTCTCAGGTGCTG-----------------CTCAGTGTGACCCGAGGGGCGCGTCACGGCGAGCTCGAGCTGGACATCCCGGGCGCTCAGGCACGAAAAACGTTCACCCTCCTGGACGTGGTGAACCGCAAGGCCCGCTTCATCCACGACGGCTCGGAGGACACCTCCGACCAGCTGGTGCTGGAGGTGTCAGTGACGGCTCGGGTGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       838077 193 +   1024465 AAGTCTCAGGTGCTG-----------------TTCAGTGTGACCCGAGGAGCACGCCACGGCGAGCTTGAGCTGGACATTCCGGGCGCTCACGCACGAAAAATGTTCACCCTCCTGGACGTGGTGAACCGCAAGGCCCGCTTCATCCACGACGGCTCTGAGGACACCTCCGACCAGCTGGTGATAGAGGTGTCAGTGACGGCTCGGGTGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2757913 193 -   3745603 AAGTCTCAGGTGCTG-----------------TTCAGTGTGACCCGAGGAGCACGTCACGGCGAGCTCGAGCTGGACATCCCGGGCGCTCAGGCACGAAAAATGTTCACCCTCCTGGACGTGGTGAACCGCAAGGTCCGCTTCATCCACGACGGCTCTGAGGACACCTCCGACCAGCTGGTGCTGGAGGTGTCAGTGACGGCTCGGGTGC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8731156 193 -  36342412 AAGTCCCAGGTGCTA-----------------TTCAGCGTGAGCCGAGGGGCACGCCATGGTGAGCTAGAGCTGGACATCCCAGGTGCCCAAGCACGGAAAATGTTCACCCTCCTGGATGTGGTGAATCGGAAGGCCCGCTTTGTCCACGATGGCTCTGAGGACACCTCTGACCAGCTGGTGCTGGAGGTGTCAGTGACGGCTCGAGTGC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56886377 193 + 124595110 AAGTCCCAGGTGCTG-----------------TTCAGCGTGAGCCAGAGTGCACGACATGGTGACCTGGAGCTAGACATCCTGGGAGCCCAAACCCGGAAAATGTTTACCCTGTTGGACGTGGTGAACCGTAAGGCCCGCTTTGTTCACGATGGCTCTGAAGACACCTCTGACCAGCTGATGCTGGAGGTGTCTGTGACTGCTCGGGCAC
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1736478 193 -  40214260 AAATCCCAGGTGCTG-----------------TTCAGCGTGAGCCGTGGGGCCCGCCACGGGGAGCTCGAGCTGGACGTCCCGGGAGCCCAGGCACGGAAAATGTTCACCCTCCTGGACGTGGTGAACCGCAAGGCCCGCTTCGTCCACGATGGCTCGGAGGAGACCTCCGACCAGCTGATGCTGGAGGTGTCCGTGACCGCCAGGGGCC
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             202646 193 -   1040364 AAATCCCAGGTGCTG-----------------TTCAGCGTGAGCCGCGGGGCGCACCACGGCGAGCTCGAGCTGGACATCCCAGGCGCCCAGGTGCGGAAAATGTTCACCCTCCTGGACGTGGTGAACCGCAAGGCACGCTTCGTCCACGACGGCTCCGAGGCCACCTCCGACCAGCTGGTGCTGGAGGTGTCGGTGACGGCTCGGGCGT
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e macNem1.NW_012011056v1      6249970 446 -   6271500 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=18465952.000000
s hg38.chr15_KI270850v1_alt    251704 1770 +    430880 CCATGCCCTCATGCCTGCGGAGGGGCCAAACAGACCTCCTGCCCATCCAGGTCAACCCTGTCAATGACCCACCCCACATCATCTTCCCACATGGCAGCCTTATGGTGATCCTGGAACACACACAGAAGCCTCTGGGGCCTGAGGTTCTCCAGGCCTATGACCTGGACTCTGCCTGTGAGGGCCTCACCTTCCAGCTCCTTGGCACCCCCTCTGGCCTCCCCGTGGAGCACCGAGAC-------CAGCCTGGGGAGCCGGTGACTGAGTTCTCCTGCTGGGAGTTGGAGGCCGGCAGCCTAGTCTATGTCCACTGTGGTGGCCCTACACAGGACTTGACATTCCGGGTCAGCAATGGACTGCAGGCCAGCC---CCCCGGCCATGCTGAAGGTGGTGGCTGTCCAGCTGGCCATACAAATCCACCGCAGCACAGGGCTGCATCTGGCCCAGGGCTCTGCCATGCCCATCTTGCCTACCAACCTGTTGGTGGAGACCAGCGCCGTGGGGCAGGATGTGACCGTGCTGTTCCGTGTCACCGGAGGCCTGCCGTTCAGGGAGCTGCAGAAGCAGGGGGCTGGTGGGGTGGAGGATGCTGAGTGGTGGGTCACACAGGCGTTCCACCAGCAGGATGTGGAGCAGGGCCACGTGAGGTACCTGAGCACTGACCCACAGCACTACACCGAGGACACCGTGGAGAACCTGGATCTGCAGGTGCAGGTGAGCTGGGAAATCCTGAGCAATCTGTCCTTCCTAGTGACCATCCAGAGAGCCACTGTGTGGATGCTGCAGCTGGAGCCACTGCACACTCAGAACACCCAGCAGGAGGCCCTCACCACAGCCCACCTGGAGGCCACCCTGGAG------------GA---GGCAGGCCCAAG---CCCCCCAACCTTCCACTGTGAGGTGGTTCAGGCTCCCAGGAAAGGCAACTTTCAACTACAGGGCACGATGCTGTCAGACGGTCAGGGCTTCACCCAGGATGACGTACAGGCTGCAGAGGTGACCTATGGGGCCATGGCACATGCCTCAGTGGCAGTGGAGGACACCTTCTGTTTCCATGTCACAGCTCCACCATATTTCTCCCCACTCTGTACCTTCTCCATCCATATTGGCGGTGACCCAGACATGCCTG---------------TCCTCGTGGTGCCCGAGGGTGGTGGGTGTGTCCTCTCTGCTGACCAGCTCTTCATCAAGAGTCTCAACAGTGCCAGGTACCTCTATGAGGTCATGGAGCAG-CCCCGCCATGGGAGGTTGACTTGGCGTGGGACACAGGACAAGATCACTATGGTGACATCCTTCACCAATGGAGACCTGATGCATGGCCAGCTGGTCTAGCAGCATGATGACTCCGAGATCACAGAAGATGATATCCCATTTCCTGCTG-CCATCAGGACCAGAGCAGTGGTGACGTGGCCTGGGAGGAGGTATGGGGTGTCTTCTGAGTGGCCATCCAGCCTGTGAATGACCACGCCCCTATGCAGACCATCAGCTGCGTCTTCCACGTGGCCTGGGGTAGGTGGCGGCTGCTGACTACAGACAACATGGCCTTCAGCAATGCTGATTCGGGCTTTGCTGAGGCCCAGCTGGTGCTGACCCACCAGGACCTCCTCTCTGGCAGTATCATGGCCACGGATGAGCCCATGCAGCCCATCTGCCGCTTCATCC-AGGAGGGGCCTCAGGAAGAGGCGAGTCCTGTTCACACACT--CAGGCTGACCACGGCTGGATCCCGCTGCAG--GTGTCCGATGGGCAGCACCAGGCCATCACGGTGCTGGAGGTGC-AGGCCTTGGAG
s gorGor5.CYUI01015946v1       350266 1767 +    378907 CTATGCCCTCATGCCTGCGGAGGGGCCAAACAGACCTCCTGCCCATCCAGGTCAACCCTGTCAATGACCCACCCCACATCATCTTCCCACATGGCAGCCTTATGGTGATCCTGGAACACACACAGAAGCCTCTGGGGCCTGAGGTTCTCCAGGCCTGTGACCTGGACTCTGCCTGTGAGGGCCTCGCCTTCCAGCTCCTTGGCACCCCCTCTGGCCTCCCCGTGGAGCACCGAGAC-------CAGCCTGGGGAGCCGGTGACTGAGTTCTCCTGCTGGGAGTTGGAGGCCGGCAGCCTAGTCTATGTCCACTGCGGTGGCCCTACACAGGACTTGACATTCCGGGTCAGCAATGGACTGCAGGCCAGCC---CCCCGGCCGTGCTGAAGGTGGTGACTGTCCAGCCGGCCATTCAAATCCACCACAGCACAGGGCTGCATCTGGCCCAGGGCTCTGCCATGCCCATCTTGCCTACCAACCTGTTGGTAGAGACCAGCGCCATGGGGCAGGATGTGACCGTGCTGTTCCGTGTCACCGGAGGCCTGCAGTTCAGGGAGCTGCAGAAGCAGGGGGCTGGTGGGGTGGAGGATGCTGAGTGGTGGGCCACACAGGCGTTCCACCAGCAGGATGTGGAGCAGGGCCACATGAGGTACCTGAGCACTGACCCACAGCACTACACCGAGGACACCGTGGAGAACCTGGATCTGCAGGTGCAGGTGAGCTGGGAAATCCTGAGCAATCTGTCCTTCCTAGTGACCATCCAGAGAGCCACTGTGTGGATGCTGCAGCTGGAGCCACTGCACACTCAGAACACCCAGCAGGAGGCCCTCACCACAGCCCACCTGGAGGCCACCCTGGAG------------GA---GGCAGGCCCAAG---CCCCCCAACCTTCCACTGTGAGGTGGTTCAGGCTCCCAGGAAAGGCAACCTTCAACTACAGGGCACGATGATGTCAGACGGTCAGGGCTTCACCCAGGATGACGTACAGGCTGGAGAGGTGACCTATGGGGCCATGGCACGTGCCTCAGTGGCAGTGGAGGACACCTTCTGTTTCCATGTCACAGCTCCACCATATTTCTCCCCACTCTGTACCTTCTCCATCCATATTGGCGGTGACCCAGACATGCCTG---------------TCCTCGTGGTGCCCGAGGGTGGTGAGTGTGTCCTCTCTGCTGACCAGCTCTTCATCAAGAGTCTCAACAGTGCCAGGTACCTCTATGAGGTCATGGAGCAG-CCCCGCCATGGGAGGTTGACTTGGCGTGGGACACAGGACAAGATCACTATGGTGACATCCTTCACCAATGGAGACCTGATGCATGGCCAGCTGGTCTAGCA---TGATGACTCCGAGATCACAGAAGATGATATCCCATTTCCTGCTG-CCACCAGGACCAGAGCAGTGGTGACGTGGCCTGGGAGGAGGTATGGGGTGTCTTCTGAGTGGCCATCCAGCCTGTGAATGACCACGCCCCTATGCAGACCATCAGCTGCGTCTTCCATGTGGCCTGGGGTAGGTGGCAGCTGCTGACTACAGACAACATGGCCTTCAGCAATGCTGATTCGGGCTTTGCTGAGGCCTAGCTGGTGCTGACCCACCAGGACCTCCTCTCTGGCAGTATCATGGCCACGGATGAGCCCATGCAGCCCATCTGCCGCTTCATCC-AGGAGGGGCCTCAGGAAGAGGCGAGTCCTGTTCACACACT--CAGGCTGACCACGGCTGGATCCCGCTGCAG--GTGTCCGATGGGCAGCACCAGGCCATCACGGTGCTGGAGGTGC-AGGCCTTGGAG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62596067 1790 + 169600520 CCATGCCCTCATCCCTACAGAGGGGCCAAAATGACCTTCTGCCCTTCCAGGTTCACCCTGTCAGTGACCCACGAGGCATCATCTTTCCACGTGGCAGCCTCATGGTGTTCCTGGAACACATGCAGAAGCCACTGGGGCCTGAGGTTTTCCAGGCCTATGACCCAGACTCTGCCTGTGAGGGCCTCGCCTTCTAGCTCCTTGGTGCCCCCTCTGGCCTCCCCATGGAGCACTGAGACCATGGAGCAGCCTGGGGAGTCGGTGACCGAATTCTCCTCCTGGGAGTTGGAGGCCGGCAGCCTAGTCTATGACCACCGCGGTGGCCCTGCACAGCACTTGATTTTCTGGATCAGCGATGGACTGCAGGCCACCCCCCCCTCGGCCACGCTGAAGGTGGTGGCTGTCCAGCTGTTCATACAGATCCACCACAGCACAGGACTGTGCCTGGCCCAGGGCTCTGCCATGCCCATCTTGCCCACCAACCTGTCGGTGGAGACCAGCGCCGTGTGGCGGGATGTGAGCGTGCTGTTCCGCATCGCTGGAGCCCTGCAGTTCAGGGAGCTGCAGAAGCAGGGGGCTAGTGGGGTGGAGGGTGCTGAGTGGTGGGCCACACAGGCATTCCACCAGCCGGACGTGGAGTAGGGCCGCGTGAGGTACCCGAGCACCGACCCACAGCACCACGTTGAGGACACCGTGGAGAGCCTGGATCTGGAGGTGCAGGTGGGCTGGGAAATCCTGAGCAATCTGTCCTTCCCAGTGACCATCCAGAGAGCCACAGTGTGGATGCTACGGCTGGAGCCACTGCACACTCAGGACACCCAGCATGACACCCTCACCACAGCCCACCTGGAGGCCACTCTGGAG------------GA---GGCAGACCCAAG---CCCTCCAACCTTCCACTATGAGGTGGTTCAGGCTCCCAGGAAAGGCAGCCTTCAACTACAGGGCACGAGGCTGTCAGGCGGCCAGGGCTTCACCCAGGATGATGTACAGGCTGGCCAGGTGACCTGTGGGGCCACGGCACGCACCTCAGTGGCAGTGGAGGACACCTTCTGTTTCTGTGTCACAGCTCCACCATATTTCTGCCTGCTCTGTACCTTCTCCATCCATACTGGCGGTGACCCAGACATGCCTGTCCTCACCAATG---TCCTCGTGGTGCCTGAGGATGATGAGGGTGTCCTGTCTACTGACCAGCTCT---TCCAGAGTCTCAACAGTGCCGGTTACCTCTATGAGGTCATGGAGTGGCCCCCGCCATGGGAGGTTGACTTGGCATGGGACACAGGACAAGACCACTGTGGTGACATCCTTCACCAATGGAGACCTGTTGTGTGGCCGGCTGGTCTACCAGCATGATGATTCTGAGGTCACAGAAGGTGATACCCCATTTGTTGCTACCCGCCAGGATGAGAGCAGTGGTGACATGGCCTGGGAGGAGGTACGGGGTGTCTTCCAAGTGGCCATCCAGCCCGTGAATGACCACGCCCCTATGCAGATCATCAGCCACGTCTTCCATGTGGCCCGGGGTAGGTGGCGGCTGCTGACTACAGTCGACGTGGCCTTCAGCAGTGCTGATTCGGGCTTTGCTGATGCCCAGCTGGTGCTGACCCGCAAGGACCTCCTCTTTGGCAGTATCATGGCTGTGGATGAGCCCATGCAGCCCATCTACTGCTTCATCC-AGGAGGGACCTCAGGAAGAGGTGAGTCCTGTTTGCACACT--GGGGCTGACCAC-GCTGGATCCAGCTGCAG--GCGTCTGATGGGCAGCACCAGGCCACCACTCTGCTGGAGGTGC-AGGCCTTGGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106516459 1790 - 171882078 CCATGCCCTCATCCCTACAGAGGGGCCAAAATGACCTTCTGCCCTTCCAGGTTCACCCTGTCAGTGACCCACGAGGCATCATCTTTCCACGTGGCAGCCTCATGGTGTTCCTGGAACACATGCAGAAGCCACTGGGGCCTGAGGTTTTCCAGGCCTATGACCCGGACTCTGCCTGTGAGGGCCTCGCCTTCTAGCTCCTTGGCGCCCCCTCTGGCCTCCCCGTGGAGCACTGAGACCATGGAGCAGCCTGGGGAGCCGGTGACCGAATTCTCCTCCTGGGAGTTGGAGGCTGGCAGCCTAGTCTATGACCACCGCGGTGGCCCTGCACAGCACTTGACTTTCTGGATCAGCGATGGACTGCAGGCCACCCCCCCCTCGGCCACGCTGAAGGTGGTGGCTGTCCAGCTGTTCATACAGATCCACCACAGCACAGGACTGTGCCTGGCCCAGGGCTCTGCCATGCCCATCTTGCCCACCAACCTGTCGGTGGAGACCAGCGCCGTGTGGCGGGATGTGAGCGTGCTGTTCCGCATCGCTGGAGCCCTGCAGTTCAGGGAGCTGCAGAAGCAGGGGGCTAGTGGGGTGGAGGGTGCTGAGTGGTGGGCCACACAGGCATTCCACCAGCCGGACGTGGAGTAGGGCCGCGTGAGGTACCCGAGCACCGACCCACAGCACCACGTTGAGGACACTGTGGAGAACCTGGATCTGGAGGTGCAGGTGGGCTGGGAAATCCTGAGCAATCTGTCCTTCCCAGTGACCATCCAGAGAGCCACAGTGTGGATGCTACGGCTGGAGCCACTGCACACTCAGGACACCCAGCATGACACCCTCACCACAGCCCACCTGGAGGCCACTCTGGAG------------GA---GGCAGGCCCAAG---CCCTCCAACCTTCCACTATGAGGTGGTTCAGGCTCCCAGGAAAGGCAGCCTTCAACTACAGGGCACGAGGCTGTCAGGCGGCCAGGGCTTCACCCAGGATGATGTACAGGCTGGCCAGGTGACCTGTGGGGCCACGGCACGCACCTCAGTGGCAGTGGAGGACACCTTCTGTTTCTGTGTCACAGCTCCACCATATTTCTGCCTGCTCTGTACCTTCTCCATCCATACTGGCGGTGACCCAGACATGCCTGTCCTCACCAATG---TCCTCGTGGTGCCTGAGGATGATGAGGGTGTCCTGTCTACTGACCAGCTCT---TCCAGAGTCTCAACAGTGCCGGCTACCTCTATGAGGTCATGGAGTGGCCCCCGCCATGGGAGGTTGACTTGGCATGGGACACAGGACAAGACCACTGTGGTGACATCCTTCACCAATGGAGACCTGTTGTGTGGCCGGCTGGTCTACCAGCATGATGATTCTGAGGTCACAGAAGGTGATACCCCATTTGTTGCTACCCGCCAGGATGAGAGCAGTGGTGACATGGCCTGGGAGGAGGTACGGGGTGTCTTCCAAGTGGCCATCCAGCCCGTGAATGACCACGCCCCTATGCAGATCATCAGCCACGTCTTCCATGTGGCCCGGGGTAGGTGGCGGCTGCTGACTACAGTCGACGTGGCCTTCAGCAGTGCTGATTCGGGCTTTGCTGATGCCCAGCTGGTGCTGACCCGCAAGGACCTCCTCTTTGGCAGTATCATGGCTGTGGATGAGCCCATGCAGCCCATCTACTGCTTCATCC-AGGAGGGACCTCAGGAAGAGGTGAGTCCTGTTTGCACACT--GGGGCTGACCAC-GCTGGATCCAGCTGTAG--GCGTCTGATGGGCAGCACCAGGCCACCACTCTGCTGGAGGTGC-AGGCCTTGGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6250416 1790 -   6271500 CCATGCCCTCATGCTTACGGAGGGGCCAAAATTACCTTCTGCCCTTCCAGGTTCACCCTGTCAGTGACCCACGTGGCATCATCTTTCCACGTGGCAGCCTCATGGTGTTCCTGGAACACATGCAGAAGCCACTGGGGCCTGAGGTTTTCCAGGCCTATGACCCGGACTCTGCCTGTGAGGGCCTCGCCTTCTAGCTCCTTGGCGCCCCCTCTGGCCTCCCCGTGGAGCACTGAGACCGTGGAGCAGCCTGGGGAGCCGGTGACCGAGTTCTCCTGCTGGGAGTTGGAGGCCGGCAGCCTAGTCTATGACCACCGCGGTGGCCCTGCACAGCACTTGATTTTCTGGATCAGCGATGGACTGCAGGCCACGCCGCCCTCGGCCATGCTGAAGGTGGTGGCTGTCCAGCTGTTCATACAGATCCACCACAGCACAGGACTGTGCCTGGCCCAGGGCTCTGCCATGCCCATCTTGCCCACCAACCTGTCGGTGGAGACCAGCGCCGTGTGGCGGGATGTGAGCGTGCTGTTCCGCATCGCGGGAGCCCTGCAGTTCAGGGAGCTGCAGAAGCAGGGGGCTAGTGGGGTGGAGGGTGCTGAGTGGTGGGCCACACAGGCATTCCACCAGCCGGACGTGGAGTAGGGCCACGTGAGGTAGCTGAGCACCGACCCACAGCACCACATCGAGGACACCGTGGAGAGCCTGGATCTGGAGGTGCAGGTGGGCTGGGAAATCCTGAGCAATCTGTCCTTCCCAGTGACCATCCAGAGAGCCACAGTGTGGATGCTACAGCTGGAGCCACTGCACACTCAGGACACCCAGCAGGACACCCTCATCACAGCCCACCTGGAGGCCACTCTGGAG------------GA---GGCAGGCCCAAG---CCCTCCAACCTTCCACTATGAGGTGGTTCAGGCTCCCAGGAAAGGCAGCCTTCAACTACAGGGCATGAGGCTGTCAGGCGGCCAGGGCTTCACCCAGGATGATGTACAGGCTGGCCAGGTGACCTGTGGGGCCACGGCACGCACCTCAGTGGCAGTGGAGGACACCTTCTGTTTCTGTGTCACAGCTCCACCATATTTCTCCCTGCTCTGTACCTTCTCCATCCATACTGGCGGTGACCCAGACATGCCTGTCCTCACCAATG---TCCTCGTGGTACCTGAGGATGATGAGGGTGTCCTCTCTACTGACCAGCTCT---TCCAGAGTCTCAACAGTGCCGGTTACCTCTATGAGGTCATGGAGCGGCCCCCGCCATGGGAGGTTGACTTGGCATGGGACACAGGACAAGACCACTATGGTGACATCCTTCACCAATGGAGACCTGTTGTGTGGCCGGCTGGTCTACCAGCATGATGATTCTGAGGTCACAGAAGGTGATACCCCATTTGTTGCTAGCCGCCAGGATGAGAGCAGTGGTGACATGGCCTGGGAGGAGGTACGGGGTGTCTTCCAAGTGGCCATCCAGCCCGTGAATGACCACGCCCCTATGCAGATCATCAGCCACGTCTTCCATGTGGCCCGGGGTAGGTGGCGGCTGCTGACTACAGTCGACGTGGCCTTCAGCAGTGCTGATTCGGGCTTTGCTGATGCCCAGCTGGTGCTGACCCGCAAGGACCTCCTCTTTGGCAGTATCATGGCTGTGGATGAGCCCATGCAGCCCATCTACTGCTTCATCC-GTGAGGGACCTCAGGAAGAGGTGAGTCCTGTTTGCACACT--GGGGCTGACCAC-GCTGGATCCAGCTGCAG--GCGTCTGATGGGCAGCACCAGGCCACCACTCTGCTGGAGGTGC-AGGCCTCGGAG
i macNem1.NW_012011056v1    I 446 C 0
s cerAty1.NW_012001384v1      5143134 1790 +   5160157 CCATGCCCTCATGCCTACAGAGGGGCCAAAATGACCTCCTGCCCTTCCAGGTTCACCCTGTCAGTGACCCACGCGACATCATCTTTCCACGTGGCAGCCTCATGGTGTTTCTGGAACACATGCAGAAGCCACTGGGGCCTGAGGTTTTCCAGGCCTATGACCCGGACTCTGCCTGTGAGGGCCTCGCCTTCTAGCTCCTTGGTGCCCCCTCTGGCCTCCCCGTGGAGCACTGAGACCGTGGAGCAGCCTGGGGAGCCGGTGACCGAGTTCTCCTGCTGGGAGTTGGAGGCCGGCAGCCTAGTCTATGACCACGGCGGTGGCCCTGCACAGCACTTGATTTTCTGGATCAGCGATGGACTGCAGGCCACCCCGCCCTCAGCCACGCTGAAGGTGGTGGCTGTCCAGCTCTTCATACAGATCCACCACAGCACAGGACTGTGCCTGGCCCAGGGCTCTGCCATGCCCATCTTGCCCACCAACCTGTCGGTGGAGACCAGCGCCGTGTGGCAGGATGTGAGCGTGCTGTTCCGCATCGCTGGAGCCCTGCGGTTCAGGGAGCTGCAGAAGCAGGGGGCTAGTGGGGTGGAGGGTGCTGAGTGGTGGGCCACACAGGCATTCCACCAGCAGGACGTGGAGTAGGGCCGCGTGAGGTACCCGAGCACCGACCCACAGCACCACGTTGAGGACACTGTGGAGAACCTGGATCTGGAGGTGCAGGTGGGCTGGGAAATCCTGAGCAATCTGTCCTTCCCAGTGACCATCCAGAGAGCCACAGTGTGGATGCTACAGCTGGAGCCACTGCACACTCAGGACACCCAGCAGGACACCCTCATCACAGCCCACCTGGAAGCCACTCTGGAG------------GA---GGCAGGCCCAAG---CCCTCCAACCTTCCACTATGAGGTGGTTCAGGCTCCCAGGAAAGGCAGCCTTCAACTACAGGGCACGAGGCTGTCAGGCGGCCAGGGCTTCACCCAGGATGATGTACAGGCTGGCCAGGTGACCTGTGGGGCCACGGCACGCACCTCAGTGGCAGTGGAGGACACCTTCTGTTTCTGTGTCACAGCTCCACCATATTTCTCCCTGCTCTGTACCTTCTCCATCCATACTGGCGGTGACCCAGACATGCCTGTCCTCACCAATG---TCCTCGTGGTGCCTGAGGATGATGAGGGTGTCCTCTCTACTGACAAGCTCT---TCCAGAGTCTCAACAGTGCCGGCTACCTCTATGAGGTCATGGAGTGGCCCCCGCCATGGGAGGTTGACTTGGCATGGGACACAGGACAAGACCACTATGGTGACATCCTTCACCAATGGAGACCTGTTGTGTGGCCGGCTGGTCTACCAGCATGATGACTCCGAGACCACAGAAGATGATAACCCATTTGTTGCTACCCGCCAGGATGAGAGCAGTGGTGACATGGCCTGGGAGGAGGTACGGGGTGTCTTCCAAGTGGCCATCCAGCCCGTGAATGACCACGCCCCTATGCAGATCATCAGCCACGTCTTCCATGTGGCCCAGGGTAGGTGGCGGCTGCTGACTACAGTCGACGTGGCCTTCAGCAGTGCTGATTCGGGCTTTGCTGATGCCCAGCTGGTGCTGACCCACAAGGACCTCCTCTTTGGCAGTATCGTAGTCGTGGATGAGCCCATGCAGCCCATCTACTGCTTCATCC-GTGAGGGACCTCAGGAAGAGGTGAGTCCTGTTTGCACACT--GGGGCTGACAAC-GCTGGATCCAGCTGCAG--GTGTCTGATGGGCAGCACCAGGCCACCACTCTGCTGGAGGTGC-AGGCCTTGGAG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7710744 1779 +  58131712 CTATGCCCCCATGCCTGCGGAGGGGCCAAACTTACCACCTGCCCATCCAGGTCAACCCTGTCAATGACCCACCCCACATCATCTTCCCACATGGCAGCCTCATGGTGATCCTGGAACACACACAGAAGCCGCTGGGGCCCGAGGTTTTCCAGGCCTATGACCCAGACTCTGCCTGTGAGGGCCTCACTTTCCAGTTCCTTGGCGCCCCCTCTGGCTTCCCCGTGCAGCGCCGAGAC-------CAGCCTGGGGAGCCGGCAACCGAGTTCTCCTGCCGGGAGTTGGAGGCCGGCAGCCTAGTCTATGTCCACCGCAGTGGCCCTGCACAGGACTTGACATTCCGGGTCAGCGATGGACTGCAGGCCAGCC---CCCCGGCCACGCTGAAGGTGGTGGCCGTCCGGCCGGCCATACAGATCCACCGCAGCACAGGGCTGCGCCTGGCCCAAGGCTCTGCCATGCCCATCTTGCCCGCCAACCTGTCGGTGGAGACCAATGCCGTGGGGCAGGATGTGAGCGTGCTGTTCCGCGTCACCGGAGCCCTGCAGTTCGGGGAGCTGCAGAAGCAGGGGGCAGGTGGGGTGGAGGGTGCTGAGTGGTGGGCCACACAGGCGTTCCACCAGCGGGATGTGGAGCAGGGCCGCGTGAGGTACCTGAGCACCGACCCACAGCACCGTACCGAGGACACCGTGGAGAACCTAGCCCTGGAGGTGCAGGTGGGCCAGGAGATCCTGAGCAATCTGTCCTTCCCAGTGACCATCCAGAGAGCCACCGTGTGGATGCTGCGGCTGGAGCCACTGCACACTCAGAACACCCAGCAGGAGACCCTCACCACAGTCCACCTGGAGGCCACCCTGGAG------------GA---GGCAGGCCCAAG---CCCCCCAACCTTCCACTATGAGGTGGTTCAGGCTCCCAGGAAAGGCAACCTTCAACTACAGGGCACGAGGCTGTCAGACGGTCAGGGCTTCACCCAGGATGACATACAGGGTGGCCGGGTGACCTATGGGGCCACAGCACGTGCCTCGGAGGCAGTCGAGGACACCTTCCATTTCCGTGTCACAGCTCCGCCATATTTCTCCCCGCTCTATACCTTCCCCATCCACATTGGTGGTGACCCAGAGGCGCCCGTCCTCACCAATGTCCTCCTCGTGGTGCCTGAGGGTGGTGAGGGTGTCCTCTCTGCTGACCACCTCTTTGTCAAGAGTCTCAATAGTGCCAGCTACCTCTATGAGGTCATGGAGCGG-CCCCGCCATGGGAGGTTGGCTTGGCGTGGGACACCGGACAAGACCACTATGGTGACATCCTTCACCAATGAAGACCTGTTGCGTGGCCGGCTGGTCTACCAGCATGATGACTCCGAGACCACAGAAGATGATATCCCATTTGTTGCTACCCGCCAGGGTGAGAGCAGTGGTGACATGGCCTGGGAGGAGGTACGGGGTGTCTTCCGGGTGGCCATCCAACCCGTGAATGACCACGCCCCTGTGCAGACCATCAGCCGCGTCTTCCATGTGGCCCGGGGTGGGTGGCGGCTGCTGACTACAGACGACGTGGCCTTCA--------GACTCGGACTTTGCTGACGCCCAGCTGGTGCTGACCCGCAAGGACCTCCTCTTTGGCAGTATCGTGGCCGTGGATGAGCCCACGTGGCCCATCTACCGCTTCACCC-AGGA-GGACCTCAGAAAGAGGCGAGTCCTGTTCATGCACT--TGGGCTGATCATGGCTGGATCCAGCTGCAGGTGTGTCCGATGGGCAACACCAGGCCACTGTGCTGCTGGAGGTGC-AGGCCTCGGAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1101040 1784 +   1458659 CCATGCCCTCATGCTTACGGAAGGGCCAAAATGACCTTCTGCCCTTCCAGGTTCACCCTGTCAGTGACCCACGTGGCATCATCTTCCCACGTGGCAGCCTCATGGTGTTCCTGGAACACATGCAGAAGCCACTGGGACCTGAGGTTTTCCAGGCCTATGACCCGGACTCTGCCTGTGAGGGCCTCGCCTTCTAGCTCCTTGGCGCCCCCTCTGGCCTCCCCATGGAGCACTGAGACCGTGGAGCAGCCTGGGGAGCTGGTGACCGAATTCTCCTCCTGGGAGTTGGAGACCGGCAGCCTAGTCTATGACCACCGCGGTGGCCCTGCACAGCACTTGACTTTCTGGATCAGTGATGGACTGCAGGCCACCCCCACCTCGGCCACGCTGAAGGTGGTGGCTGTCCAGCTGGCCATACAGATCCACCACAGCACAGGACTGTGCCTGGCCCAGGGCTCTGCCATGCCCATCTTGCCCACCAACCTGTCGGTGGAGACCAGCGCCATGTGGCAGGATGTGAGTGTGCTGTTTGGCATCGCTGGAGCCCTGCAGTTCAGGGAGCTGCAGAAGCAGGGGGCTAGTGGGGTGGAGGGTGCTGAGTGGTGGGCCACACAGGCATTCCACCAGCAGGACGTGGAGTAGGGCCGCGTGAGGTACCCGAGCACCGACCCACAGCACCACGTTGAGGACACTGTGGAGAACCTGGATCTGGAGGTGCAGGTGGGCTGGGAAATCCTGAGCAATCTGTCCTTCCCAGTGACCATCCAGAGAGCCACAGTGTGGATGCTACGGCTGGAGCCACTGCACACTCAGGACACCCAGCATGACACCCTCACCACAGCCCACCTGGAGGCCACTCT---------------------GGCAGGCCCAAG---CCCTCCAACCTTCCACTATGAGGTGGTTCAGGCTCCCAGGAAAGGCAGCCTTCAACTACAGGGCACGAGGCTGTCAGGCGGCCAGGGCTTCACCCAGGATGATGTACAGGCTGGCCAGGTGACCTGTGGGGCCACGGCACGCACCTCAGTGGCAGTGGAGGACACCTTCTGTTTCTGTGTCACAGCTCCACCATATTTCTCCCTGCTCTGTACCTTCTCCATCCATACTGGCGGTGACCCAGACATGCCTGTCCTCACCAATG---TCCTCGTGGTGCCTGAGGATGATGAGGGTGTCCTCTCTACTGACAAGCTCT---TCCACAGTCTCAACAGTGCCGGCTACCTCTATGAGGTCATGGAGTGGCCCCCGCCATGGGAGGTTGACTTGGCATGGGACACAGGACAAGACCACTATGGTGACATCCTTCACCAATGGAGACCTGTTGTGTGGCCGGCTGGTCTACCAGCATGATGATTCTGAGGTCACAGAAGGTGATACCCCATTTGTTGCTACCCGCCAGGATGAGAGCAGTGGTGACATGGCCTGGGAGGAGGTACGGGGTGTCTTCCAAGTGGCCATCCAGCCCGTGAATGACCACGCCCCTATGCAGATCATCAGCCACGTCTTCCATGTGGCCCGGGGTAGGTGGCGGCTGCTGACTACAGTCGACGTGGTCTTCAGCAGTGCTGATTTGGGCTTTGCTGATGCCCAGCTGGTGCTGACCCACAAGGACTTCCTCTTTGGCAGTATCATGGATGTGGATGAGCCCATGCAGCCCATCTACTGCTTCATCC-ATGAGGGACCTCAGGAAGAGGTGAGTCCTGTTTGCACACT--GGGGCTGACCAC-GCTGGATCCAGCTGCAG--GTGTCTGATGGGCAGCACCAGGCCACCACTCTGCTGGAGGTGC-AGGCCTTGGAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       311562 1785 +   4111199 CCATGCCCTCATGCCTACGGAGGGGCCAAAATGACCTCCTGCCCTTCCAGGTTCACCCTGTCAGTGACCCACCCAGCATCATCTTCCCACGTGGCAGCCTCATGGTGTTCCTGGAACACACACAGAAGCCACTGGGGCCTGAGGTTTTCCAGGCCTATGACCTGGACTCTGCCTGTGAGAGCCTCTCCTTCTAGCTCCTTGGTACCCCCTCTGGCCTCCCTGTGGAACACTGAGACCGTGGAGCAGCCTGGGGAGCCGGTGACCGAGTTCTCCTGCCGGGAGTTGGAGGCCGGCAGCCTAGTCTATGACCGCTGTGGAGGCCCTGCACAGCACTTGACTTTCTGGATCAGCGATGGACTGCA---CCCCCACCACCCGGCCCTGCTGAAGGTGGTGGCTGTCCAGCTGCCCATACAGATCCACCACAGCACAGGACTGTGCCTGGCCCCGGGCTCTGCCATGCCCATCTTACCCACCAACCTGTCGGTGGAGAGCAGCGCCGTGTGGCAGGATGTGAGTGTGCTGTTCCGCATCGCTGGAGCCCTGTAGTTCAGGGAGCTGCAGAAGCAGGGGGCTAGTGGGGTGGAGGGTGCTGAGTGGTGGGCCACACAGGCATTCCACCAGCAGGATGTGGAGTAGGGCCGCGTGAGGTACCTGAGCACCGACCCACAGCACCACGTCGAGGACACCGTGGAGAACCTGGATCTGGAGGTGCAGGTGGGCTGGGAAATCCTGAGCAATCTACCCTTCTCAGTGACCATCCAGAGAGCCACAGTGTGGATGCTGCAGCTGGAGCCACTGCACACTCAGGACACCGAGCAGGACACCCTCACCACAGCCCACCTGGAGGCCACTCTGGAG------------GA---GGCAGGCCCAAG---CCCTCCAACCTTCCACTGTGAGGTGGTTCAGGCTCCCAGGAAAGGCAG-CTTCAACTACAGGGCACGAGGCTCTCAGGCGGCCAGGGCTTTACCCAGGATGATGTACAGGCTGGCCAGGTGACCTGTGGGGCCACGGCACGCACCTCAGTGGCAGTGGAGGACACCTTCTGTTTCTGTGTCACAGCTCCACCATATTTCTCCCTGCTCTGTACCTTCTCCATCCATACTGGCGGTGACCCAGACATGCCTGTCCTCACCAATG---TCCTCGTGGTGGCTGAGGATGATGAGGGTGTCCTCTCTACTGACCAGCTCT---TCCAGAGTCTCAACAGTGCCAGGTACCTCTATAAGGTCATGGAGTGGCTCCCGCCATGGGAGGTTGACTTGGCATGGGACACAGGACAAGACTACTATGGTGACATCCTTCACCAATGGAGACCTGTTGTGTGGCCGGCTGGTCTACCAGCATGATGATTCTGAGATCACAGAAGGTGATATCCCATTTGTTGCTACCCGCCAGGATGAGAGCAGTGGTGACATGGCCTGGGAGGAGGTACAGGGTGTCTTCCAAGTGGTCATCCAGCCCGTGAATGACCACGCCCC-ATGCAGATCATCAGCCACGTCTTCCATGTGGCCCGGGGTAGGTGGCGGCTGCTGACTACAGTCGACGTGGCCTTCAGCAGTGCTGATTTGGGCTTTGCTGATGCCCAGCTGGTGCTGACCCACAAGGACCTCCTCTTTGGCAGTATCATGGCCGTGGATGAGCCCATGCAACTCATCTACTGCTTCATCC-ATGTGGGGCCTCAGGAAGAGGTGAGTCCTGTTTGCGTACT--CAGGCTGACCAT-GCTGGATCCAGCTGCAG--GTGTCTGATGGGCAGCACCAGGCCACCACTCTGCTGGAGGTGC-AGGCCTTGGAG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114229255 1785 - 132174527 CCATGCCCTCGTGCCTGCGGAGGGGCCAAACTTACCTCCTGCCCATCCAGGTCAACCCTGTCAATGACCCGCCCCACATCATCTTCCCACATGGCAGCCTCATGGTGATCCTGGAACACACGCAGAAGCCACTGGGGCCCGAGGTTTTCCAGGCTTATGACCCGGATTCTGCCTGCGAGGGCCTCACCTTCCAGCTCCTTGGTGCCCCCTCAGGCCTCCCTGTGGAGCGCCGAGAC-------CAGCCTGGGGAGCCAGCGACCGAGTTCTCCTGCCGGGAGTTGGAGGACGGGAACCTAGTGTATGTCCACCACAGTGGCCCAGCACAGGACTTGACGTTCCGGGTCAGTGATGGACTGCAGGCCAGCC---CCCCAGCCACACTGAAGGTGGTGGCTGTCCGACCAACTATACAGATCCGCCGCAGCACAGGGCTGCGCCTGGCCCAGGGCTCCGCCATGCCCATCTTGCCCGCCAACCTGTCAGTGGAGACCAACGCCGTGGGGCAGGATGTGAGCGTGCTGTTCCGCATCCCCGGAGCCCTGCAGTTTGGGGAGCTGCAGAAGCAGGGCGCAGGTGGGGTGGAGGGTGCTGAGTGGTGGGCCACACAGGCGTTCCACCAGCGGGACGTGGAGCAGGGCCGTGTGAGGTACCTGAGCACCGACCCACAGCACCACACTGAGGACACCATGGAGAACCTGGCCCTGGAGGTGCAGGTGGGCCAGGAGATCCTGAGCAATCTGTCCTTCCCAGTGATCATCCAGAGAGCCACTGTGTGGATGCTGCGGCTGGAGCCACTGCACACTCAGAACACCCAGCAGGAGGCCCTCACCACAGCCCACCTGGAGGCCACCCTGGAG------------GA---GACAGGCCCAAG---CCCCCCAACCTTCCACTATGAGGTGGTTCAGGCTCCCAGGAAAGGCAATCTTCAACTACAGGGCACGAGGCTGTCAGATGGTCAGGGCTTCACCCAAGATGACCTTCAGGCTGGCCGGGTGACCTATGCGGCCACAGCACGTGCCTCGGAGGCAGTCGAGGACACCTTCCGTTTCCGTGTCACAGCTCCACCATATTTCTCCCCGCTCTATACCTTCCCCATCCACATTGGCGGTGACCCAGACGCACCTGTCCTCACCAACGTCCTCCTTGTGGTGCCTGAGGGTGGTGAGGGTGTCCTTTCTGCTGACCACCTCTTTGTCAAGAGTCTCAACAGTGCCAGCTACCTCTATGAGGTCATGGAGCGG-CCCCGCCATGGGAGGTTGGCTTGGCGTGGGACACAGGACAAGACCACTGTGGTGACATCCTTCACCAATGAAGATCTGTTGCGTGGCCGGCTGGTCTACCAGCATGATGACTCCGAGACCACAGAAGATGATATCCCGTTTGTTGCTACCCGCCAGGGCGAGAGCAGTGGTGACATGGCCTGGGAGGAGGTACGAGGTGTCTTCAGAGTGGCTATCCAGCCCGTGAATGACCACGCCCCTGTGCAGACCATCAGCCGCGTCTTCCATGTGGCCCGGGGTGGGCGGCGGCTGCTGACGACTGATGACGTGGCCTTCAGCGACGCTGACTCAGGCTTTGCTGACGCCCAGCTAGTGCTGACCCGC-AAGACCTCCTCTTTGGCAGTATCGTGGCCGTGGATGAGCCCACGCGACCCATCTACCGCTTCACCCAAGGA-GGACCTCATGAAGAGGCAAGTCCTGTTTGTGCACTCAGGGGCTGA-CGATGCTGGATCCAGCTGCA---GTGT-CGACGGACAGCACAAGGCAACCGCGCTGCTGGAGGTGCAAGGCCTCAGAG
i calJac3.chr10             C 0 M 1176
s saiBol1.JH378276            2885836 1787 +   3282555 CCATGCCCTCGTGCCTGCGGAGGGGCCAAACGTACCTCCTGCCCATCCAGGTCAACCCTGTCAACGACCCGCCCCGCATCATCTTCCCACACGGCAGCCTCATGGTGATCCTGGAACACACGCAGAAGCCGCTGGGGCCCGAGGTGTTCCGGGCCTATGACCCGGACTCTGCCTGCGAGGGCCTCACCTTCCAGCTCCTTGGTGCCCCCTCGGGCCGCCCCGTGGAGCGCCGAGAC-------CAGCCTGGGGAGCCGGCGACCGAGTTCTCCTGCCGCGAGTTGGAGGACGGGAACCTAGTGTATGTCCACCACGGTGGCCCAGCCCAGGACTTGACGTTCTGGGTCAGTGACGGACTGCAGGCCAGCC---CCCCCGCCACACTGAAGGTGGTGGCCGTCCGACCGGCTATACAGGTCCGCCGCAGCACGGGGCTGCGCCTGGCCCAGGGCTCCGCCATGCCCATCTTGCCCGCCAACCTGTCAGTGGAGACCAACGCCGTGGGGCAGGATGTGAGCGTGCTGTTCCGCGTCCCCGGAGCCCTGCAATTCGGGGAGCTGCAGAAGCAGGGCGCAGGTGGGGTGGAGGGTGCCGAGTGGTGGGCCACGCAGGCTTTCCACCAGCGGGACGTGGAGCAGGGCCGCGTGAGGTACCTGAGCACCGACCCGCGGCACCGCGCTGAGGACACCGTGGAGAATCTGGCCCTGGAGGTGCAGGTGGGCCAGGAGATCCTGAGCAATCTCTCCTTCCCAGTGACCATCCAGAGAGCCACGGTGTGGATGCTGCGGCTGGAGCCACTGCACACTCAGAACACCCAGCAGGAGGCCCTCACCACGGCCCACCTGGAGGCCACCCTGGAG------------GA---GGCAGGCCCAAG---CCCCCCAACCTTCCACTACGAGGTAGTTCAGGCTCCCAGGAAAGGCAACCTTCAGCTACAGGGCACGAGGCTGTCAGACGGACAGGGCTTCACCCAGGACGACCTGCAGGCTGGCCGGGTGACCTATGCGGCCACGGCACGCGTCTCGGAGGCAGTCGAGGACACCTTCCGTTTCCGTGTCACAGCCCCACCATATTTCTCCCCTCTCTATACCTTCCCCATCCACATCGGCGGCGACCCGGACGCGCCCGTCCTCACCAACGTCCTCCTTGTTGTGCCTGAGGGTGGTGAGGGTGTCCTCTCTGCTGACCACCTCTTCGTCAAGAGTCTCAACAGTGCCAGCTACCTCTATGAGGTCATGGAGCGG-CCCCGCCACGGGAGGTTGGCTTGGCGTGGGACACAGGACAAGACCACTATGGTGACATCCTTCACCAATGAAGATCTGTTGCGTGGCCGGCTGGTCTACCAGCATGATGACTCCGAGACCACAGAAGACGATATCCCATTTGTTGCTACCCGCCAGGGCGAGAGCAGTGGTGACATGGCCTGGGAGGAGGTGCGGGGTGTCTTCAGAGTGGCCATCCAGCCCGTGAATGACCACGCCCCTGTGCAGACCATCAGCCGCGTCTTCCATGTGGCCCGGGGTGGGCGGCGGCTGCTGACGACTGACGACGTGGCCTTCAGCGACGCTGACTCGGGCTTTGCTGACGCCCAGCTGGTGCTGACCCGCAAAGACCTCCTCTTTGGCAGTATCGTGGCCGTGGATGAGCCCACGCGGCCCATCTACCGCTTCACCC-AGGA-GGACCTCAGGAAGAGGCGAGTCCTGTTCGTGCACTCGGGGGCTGACCGAGGCTGGATCCAGCTGCAG--GTGTCCGACGGGCAGCACCAGGCCACCGCGCTGCTGGAGGTGC-AGGCCTCAGAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       838270 1787 +   1024465 CCATGCCCTCGTGCCTGCGGAGGGGCCAAACTTACCTCTTGCCCATCCAGGTCAACCCTGTCAACGACCCGCCCCGCATCATCTTCCCACATGGCAGCCTCATGGTGATCCTGGAACACACGCAGAAGCCGCTGGGGCCCGAGGTTTTCCAGGCCTATGACCCGGACTCTGCCTGCGAGGGCCTCACCTTCCAGCTCCTTGGTACCCCCTCGGGTCTCCCCGTGGAGCGCCGAGAC-------CAGCCTGGGGAGCCGGCGACTGAGTTCTCCTGCCGGGAGTTGGAGGACGGGAACCTAGTGTATGTCCACCGCAGTGGCCCAGCACAGGACTTGACGTTCCGGGTCAGTGACGGACTGCAGGCCAGCC---CCCCAGCCACACTGAAGGTGGTGGCTGTCCGACCGGCTATACAGATCCGCCGCAGCACAGGGCTGCGCCTGGCCCAGGGCTCCGCCATGCCCATCTTGCCTGCCAACCTGTCAGTGGAGACCAACGCCGTGGGGCAGGATGTGAGCGTGCTGTTCCGCGTCCCCGGAGCCCTGCAGTTCGGGGAGCTGCAGAAGCAGGGCGCAGGTGGGGTGGAGGGTGCTGAGTGGTGGGCCACGCAGGCGTTCCACCAGCGGGACGTGGAGCAGGGCCGCGTGAGGTACCTGAGCACCGACCCAGAGCACCACGCTGAGGACACCGTAGAGAACCTGGCCCTGGAGGTGCAGGTGGGCCAGGAGATCCTGAGCAATCTGTCCTTCCCAGTGACCATCCAGAGAGCCACGGTGTGGATGCTGCGGCTGGAGCCACTGCACACTCAGAACACCCAGCAGGAGGCCCTCACCACAGCCCACCTGGAGGCCACCCTAGAG------------GA---GGCAGGCCCAAG---CCCCCCGACCTTCCACTATGAGGTAGTTCAGGCTCCCAGGAAAGGCAACCTTCAACTAAAGGGCATGAGGCTGTCAGACGGGCAGGGCTTCACCCAGGACGACCTACAGGCTGGCCGGGTGACCTATGCGGCCACGGCACGTGCCTCAGAGGCAGTCGAGGACACCTTCCGTTTCCGTGTCACAGCTCCACCATATTTCTCCCCGCTCTATACCTTCCCCATCCACATCGGCGGTGACCCAGACGCGCCCGTCCTCACCAACGTCCTCCTTGTGGTGCCTGAGGGTGGTGAGGGTGTCCTCTCTGCTGACCACCTCTTCGTCAAGAGTCTCAACAGTGCCAGCTACCTCTATGAGGTCATGGAGCGG-CCCCGCCATGGGAGGTTGGCTTGGCGTGGGACACAGGACAAGACCACTATGGTGACATCCTTCACCAATGAAGATCTGTTGCGTGGCCGGCTGGTCTACCAGCATGATGACTCTGAGACCACAGAAGATGATATCCCATTTGTTGCTACCCGCCAGGGCGAGAGCAGTGGTGACATGGCCTGGGAGGAGGTCCGGGGTGTCTTCAGAGTGGCCATCCAGCCCGTGAATGACCATGCCCCTGTGCAGACCATCAGCCGCATCTTCCATGTGGCCCGGGGTGGGCGGCGGCTGCTGACGACTGATGACGTGGCCTTCAGCGACGCTGACTCGGGCTTTGCTGACGCCCAGCTGGTGCTGACCCGCAAAGACCTCCTCTTTGGCAGTATCGTGGCCGTGGATGAGCCCACGCGGCCCATCTACCGTTTCACCC-AGGA-GGACCTCAGGAAGAGGCGCGTCCTGTTCGTGCACTCAGGGGCTGACCGAGGCTGGATCCAGCTGCAG--GTGTCCGACGGGCAGCACCAGGCCACCGCGCTGCTGGAGGTGC-AGGCCTCAGAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2758106 1787 -   3745603 CCATGCCCTCGTGTCTGCGGAGGGGTCAAACTTACCTCCTGCCCATCCAGGTCAACCCTGTCAATGACCCGCCCCGCATCATCTTCCCACATGGCAGTCTCATGGTGATCCTGGAACACACACAGAAGCCGCTGGGGCCCGAGGTTTTCCAGGCCTATGACCCAGACTCTGCCTGCGAGGGCCTCACCTTCCAGCTCCTTGGTGCTCCCTTGGGTCTCCCCGTGGAGCGCCGAGAC-------CAGCCTGGGGAGCTGGCAACCGAGTTCTCCTGCCGGGAGTTGGAGGACGGGAACCTGGTGTATGTCCACCACAGTGGCCCAGCACAGGACCTGACGTTCCGGGTCAGTGATGGACTGCAGGCCAGCC---CCCCAGCCACACTGAAGGTGGTGGCTGTCCGACCGGCTATACAGATCCGCCGCAGCACAGGGCTGCACCTGGCCCAGGGCTCCGCCATGCCCATCTTGCCCTCCAACCTGTCCGTGGAGACCAATGCCGTGGGGCAGGATGTGAGCGTGCTGTTCCGCGTCCCCGGAGCCCTACAGTTCGGGGAGCTGCAGAAGCAGGGTGCTGGTGGGGTGGAGGGTGCTGAGTGGTGGGCCACGCAGGCGTTCCACCAGCGCGACGTGGAGCAGGGCCGCGTGAGGTACCTGAGCACCGACCCACAGCACCACGCTGAGGACACCGTGGAGAACCTGGCCCTGGAGGTGCAGGTGGGCCAGGAGATCCTGAGCAATCTGTCCTTCCCAGTGACCATCCAGAGAGCCACTGTGTGGATGCTGCGGCTGGAGCCACTGCACACTCAAAACACCCAGCAGGAGGCCCTCACCACAGCCCATCTGGAGGCCACCCTGGAG------------GA---GGCAGGCCCAAG---CCCCCCAACCTTCCACTATGAGGTGGTTCAGGCTCCCAGGAAAGGCAACCTTCAACTACAGGGCATGAGGCTGTCAGACGGTCAGGGTTTCACCCAGGACGACCTACAGGCTGGCCGGGTGACCTATGCGGCCACGGCACGTGCCTCGGAGGCAGTCGAGGACACCTTCCGTTTCCGTGTCACAGCTCCACCATATTTCTCCCCGCTCTATACCTTCCCCATCCACATCGGTGGTGACCCAGACGCACCCATCCTCACCAACGTCCTCCTTGTGGTGCCTGAGGGTGGTGAGGGTGTCCTCTCTGCTGACCACCTCTTTGTCAAGAGTCTCAACAGTGCCAGCTACCTCTATGAGGTCATGGAGCGG-CCCCGCCATGGGAGGTTGGCTTGGCGTGGGACACAGGACAAGACCACTATGGTGACATCCTTCACCAATGAAGATCTGTTGCATGGCCGGCTGGTCTACCAGCATGATGACTCCGAGACCACAGAAGATGATATCCCATTTGTTGCTACCCGCCAGGGCGAGAGCAGTGGTGACATGGCCTGGGAGGAGGTACGGGGTGTCTTCAGAGTGGCCATCCAGCCCGTGAATGACCACGCCCCTGTGCAGACCATCAGCCGTGTCTTCCATGTGGCCCGGGGTGGGCGGAGGCTGCTGACGACTGATGACGTGGCCTTCAGCGACGCTGACTCGGGCTTTGCTGACGCCCAGCTGGTGCTGACCCGCAAGGACCTCCTCTTTGGCAGTATTGTGGCTGTGGATGAACCCACGCGGCCCATCTACCGCTTCACCC-AGGA-GGACCTCAGGAAGAGGCGAGTCCTGTTCGTGCACTCAGGGGCCGACCGCGGCTGGATCCAGCTGCAG--GTGTCCGACGGGCAACACCAGGCCACCGCGCTGCTGGAGGTGC-AGGCCTCAGAG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8731349 1790 -  36342412 CTGTGCCTTCATGCCTGCGGAGGGGCCAAACTTACATCCTGCCAATACAGATAAACCCTGTCAATGACCCACCCCGTATCATCTTCCCTCACGGCAGCCTCATGGTGATTCTGGAACACACACAGAAGCCACTGGGCCCTGAAGTTTTCCAGGCCTATGACCCAGACTCTGCCTGTGAGGGCCTCACCTTCCAATTCCTCGGTGCCCCCACTGGTCTCCCCGTGGAACGCCGAGAC-------CAGCCTGGGGAGCTGGTGACTGAATTCTCCTGCCAGGAGCTGGAGGCAGGCAGCCTTGTCTATGTCCATCAGGGTGGCCCTGCACAGGACTTGACATTCCGGGTCAGTGATGGGCTGCAGGCCAGCC---CCCCGGCCACACTGAAGGTGGTGGCTGTCCAGCCAGCCATACAGATCCGCCGCAGCACAGGACTCCATGTGGCTCAGGGCTCTGCGGCACCTATCTTTCCCGCCAACCTGTCGGTGGAGACCAATGCCGTGGGGCAGGATGTGAGCGTGCTGTTCCGAGTCACCACCGCCCTGCAGTTTGGCGAGCTGCAGAAGCAAGGAGCAGGTGGGGTGGAGGGTGCTGAGTGGTGGGCCACGCAGGCGTTCCACCAGCAGGATGTGGAGCAGGGCCGTGTGAGATATCTGAGCACTGACCCACAGCACCGCATGGAGGACACCATGGAGAACCTGGCCCTGGAGGTGCAGGTGGGCCAGGAGACCCTGAGCAATGTGTCTTTCCCAGTGACCATCCAGAGAGCCATGGTGTGGATGTTGCGACTAGAGCCACTGCACACACACAACACCCAGCAGGAGGCCCTCACCACAGCCCACCTAGAAGCCACCCTAGAG------------GA---AGTAGGCCCCAGCCCCCCCCCCACCTTCCACTATGAGGTAGTTCAGGCTCCAAGGAAAGGAAACCTTCAGCTACAAGGGGCACGGTTGTCAGATGGTCAAAGCTTCACCCAAGATGACGTACAGGCTGGCCGGGTGACCTATGGGGCCACAGCACGTGCCTCAGAGGCAGTTGAGGACAGCTTCCGTTTCCGTGTCATAGCCCCACCGTACTTCTCCCCATTGTATACCTTCCCCATCCATATTGGCGGTGACCCAGATGCTCCCGTCCTCACCAATGTCCTGCTCGTGGTGCCCGAGGGTGGTGAAGGTGTCCTCTCTGCTGACCACCTCTTTGTCAAGAGTCTCAATAGTGCCAACTACCTCTATGAGGTCATGGAGCGA-CCCCGTCATGGAAGGTTGGCTTGGCAGGAAACACCAGACAAGACCACTGTGGTGACATCCTTCACCAATGAAGATCTGCTCCATGGCCGGCTGGTCTACCAGCATGATGACTCTGAGACCACGGAAGATGATATCCCATTTGTGGCTACCCGCCAGGGTGAGAGCAGTGGTGACATGGCCTGGGAGGAAGTACGGGGTGTCTTCCGAGTGGCCATCCAGCCTGTGAATGACCACGCCCCTGTGCAGACCATCAGCCGTGTCTTCCATGTGGCCCGGGGTGGGCAGCGGCTGCTGACTACAGATGATGTGGCCTTCAGTGATGCTGACTCAGGCTTTGCTGACGCCCAGCTGGTGCTGACCCGCAAGGACCTCCTCTTTGGCAGTATCGTGGCTGCAGATGAGCCCATGCGGGCCATCTACCGCTTCACCC-AGGA-GGATCTCAGGAAGAGGCGAGTGCTGTTTGTGCACTCAGGGGCCGACCGTGGCTGGATCCAGCTGCAG--GTGTCTGATGGGCAGCACCAGGCCACTGCGTTGCTGGAGGTGC-AGGCCTCAGAG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56886570 1799 + 124595110 CTGTGCCCTCCTGCCTGCGGAGGGGCCAAATTTACATCCTGCCCATCCAGGTCAATCCTGTCAACGATCCACCTCGCATCATCTTCCCCCACGGCAGCCTCATGGTGATCCTGGAACACACACAGAAGCCTCTGGGACCGGAGATTTTCCAGGCCTACGACCCGGACTCTGCCTGTGAGGGTCTCACCTTCCAGCTCCTTGGCGTCTCCTCTGGTGTCCCTGTGGAACACCGAGAC-------CAGCCAGGAGAGCCAGCAACTGAGTTTTCCTGTCGGGAACTGGAGGTGGGCGACATAGTCTATGTCCACCGTGGTGGGCCTGCACAGGACCTAACATTCCGGGTCAGTGATGGGATGCAGGCCAGTG---CTCCAGCGACACTGAAGGTAGTGGCCGTCCGGCCAGCCATACAGATCCTCCACAACACAGGGCTGCACCTGGCCCAGGGCTCTGCCGCAGCCATCTTGCCTGCCAACCTGTCAGTAGAAACGAACGCGGTGGGACAGGATGTGAGCGTGCTGTTCCGAGTCACTGGTACCTTGCAATTCGGGGAGCTGCAGAAGCAGGGGGCCGGAGGGGTCGAGGGCACCGAGTGGTGGGACACACTGGCCTTCCACCAGCGCGATGTGGAGCAAGGCCGAGTGAGGTACCTGAGCACTGACCCACAGCACCACACCCAAGACACAGTGGAGGACCTGATCTTAGAGGTGCAGGTGGGCCAGGAGACACTGAGCAATCTGTCTTTCCCAGTGACCATCCAGAGGGCCACAGTATGGATGCTGAGGCTTGAACCTCTGCATACACAGAACCCTCATCAGGAGACCCTCACCCCAGCCCACCTAGAGGCATCCCTGGAGGAAGAGGAGGAAGA---GGGAAGCCCACA---ACCTCATACCTTCCACTATGAGTTGGTTCAGGCCCCCAGAAGAGGCAACCTCCTGCTTCAGGGTACAAGGCTGTCAGACGGCGAGAGCTTCAGCCAGAGTGACCTGCAGGCCGGTCGGGTGACCTACAGGGCCACAATGCGGACCTCTGAGGCAGCCGATGACTCCTTCCGTTTCCGGGTCACATCCCCACCCCATTTCTCCCCGCTCTACACATTCCCCATCCACATTGGTGGTGACCCAAATGCTCCCGTCCTCACTAACGTCCTTCTCATGGTCCCCGAGGGAGGGGAGGGCGTGCTGTCTGCCGACCACCTCTTCGTCAAGAGTCTCAACAGCGCCAGCTATCTCTATGAGGTGATGGAGCAG-CCTCACCATGGCAAGTTGGCTTGGAGGGACCCAAAGGGGAAGTCCACCCCAGTGACATCCTTCACTAATGAGGACCTACTTCATGGCCGACTGGTCTACCAGCACGATGACTCTGAGACCATAGAGGATGATATCCCGTTTGTGGCCACACGCCAGGGAGAGGGCAGTGGTGACATGGCCTGGGAGGAGGTGCGTGGTGTCTTCCGAGTGGCCATCCAGCCTGTGAATGACCACGCCCCTGTGCAGACCATTAGCCGTGTCTTCCACGTGGCCCGGGGTGGACAGCGACTGCTGACTACAGATGATGTAGCCTTCAGCGATGCTGATTCAGGGTTCAGTGATGCGCAACTGGTGCTGACCCGCAAGGACCTCCTCTTTGGCAGCATTGTGGCTATGGAGGAGCCCACGAGGCCCATCTACCGGTTCACCC-AAGA-GGATCTCAGGAAGAAGCAAGTCCTGTTTGTGCACTCGGGGGCCGACCACGGCTGGCTCCAGCTGCAG--GTGTCTGATGGGCAGCACCAGGCTACTGCCATGCTGGAGGTCC-AAGCCTCAGAA
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1736671 1790 -  40214260 CTGTGCCCTCCTGCCTCCGGAGGGGCCAGACTTACATCCTGCCCATCCAGATAAACCCGGTCAACGACCCACCCCAAATCATCTTCCCCCACGGCAGCCTCATGGTGATCCTGGAACACACACAGAAGCCCCTGGGGCCCGAGGTCTTCCAGGCCTACGACCCAGACTCTGCCTGCGAGGGCCTCACCTTCCAGCTCCTTGGCACCGCCCCGGGCCTGCCGGTGGAGCGCCAGGAG-------CAGCCCGGGGAGCCAGCCACCGAGTTCTCCTGCCGGGAGCTGGAGGCGGGCGGCCTGGTCTACGTGCACCGGAGCGGGCCCGCCCAGGACCTGACGTTCCGCGTCAGCGACGGGCTGCAGGCCAGCG---CTCCGGCCACGCTGCAGGTGGTGGCGGTCCGGCCCAGCATCCGGGTCCGCCACAACACGGGGCTGCGCCTGGCCCAGGGCTCCGCCGCCCCGGTGCTGCCCGCCAATCTGTCGGTGGAGACCAACGCGGTGGGGCAGGATGTGAGCGTGCTGTTCCGGGTCGCCGCGGCCCTGCGGTTCGGGGAGCTGCAGAAGCAGGGCGCGGGGGGCGCCGAGGGCGCGGAGTGGCGCCCGGTGCAGGCCTTCCAGCAGCGGGACGTGGAGCAGGGCCGCGTGAGGTACCTGAGCACCGACCCGCAGCACCGCACGGAGGACGCCGTGGAGCGCGTGGCCCTGGAGGTTCAGGTGGGCCAGGAGACCCTGAGCAATCTGTCCTTCCTGGTGACGATCCAGAGAGCCACCGTGCGGCTGCTGCGGCTCGAGCCCCTGCGCACCCACACCACGCGGCAGGAGGCGCTCACCGGCGCGCACCTGGAGGCCGCTCTGGAG------------GAGGGGGCGGGCCCCAG---CCCCACCACCTTCCACTACGAGCTGGTTCAGGCCCCCAGGAAGGGTAACCTCAGGCTGCAGGGCGCCCGGCTGTCCGAGGGGCAGGGCTTCACCCAGGATGACCTGCAGGCCGGCCGGGTGACCTACGGGGCCACGGCGCGCACCTCGGAGACCGTGGAGGACGCCTTCCGTTTCCGCGTCACGGCTCCGCCACATTTCTCCCCGCTCTACACCTTCCCCATCCACATCGGGGGTGACCCCGACGCCCCCGTCCTCACCAACGTCCTCCTCTCCGTGCCCGAGGGAGGCGAGGGCGTCCTCTCCGCGGAACACCTGTTCGTCAAGAGCCTCAACAGCGCCAGCTACCTCTATGAGGTCATGGAGCGG-CCCCGCCACGGGCGGCTGGTCTGGAGGGGGGCGCAGGACGAGGCCACCGCGGTGACGTCCTTCACCAACGAGGACCTGCTGCAGGGCCGGCTGGTCTACCAGCATGACAACTCCGAGACCACGGAAGACGACATCCCCTTCGTGGCAACCCGCCAGAGTGAGGGCAGCGGCGGCCTGGCCTGGGAGGAGGTCCGGGGCGTCTTCCGCGTGGCCATCCAGCCCGTGAACGACCACGCTCCCGTGCAGACCGTCAGCCGCGTCTTCCACGTGGCCCGGGGCGGGCGGCGGCTGCTGACGACCGACGACGTGGCCTTCAGTGACGCCGACTCCGGCTTCGCCGACGCGCAGCTGGTGCTGACCCGCAAGGACCTTCTCTTCGGCAGCATCGTGGCCGCGGACGAGCCCACGCGGCCCATCTACCGCTTCTCCC-AGGA-GGACCTCCGGAAGAGGCGCGTCCTGTTCGTGCACTCCGGGGCCGACCGCGGCTGGATCCAGCTGCAG--GTGTCCGACGGGCGGCACCAGGCCACCGCGCTGCTTGAAGTGC-AGGCATCCGAG
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             202839 1787 -   1040364 CCGTGCCCTCGTGCCTGCGGAGGGGCCAGACTTACATCCTGCCCATCCAGGTGAACCCCGTCAATGACCCGCCCCGCGTCGTCTTCCCCCACGGCAGCCTCATGATCGTCCTGGAGCACACGCAGAAGCCCCTGGGGCCCGACGTCTTCCAGGCTTACGACCCAGACTCTGCCTGCGAGAGCCTCACCTTCCAGCTCCTCGGCACCCCTGCCGGCCTCCCCGTGGAGCGCCCAGAG-------CAGCCCGGCGAGCCAGCGGCCGAGTTCTCCTGCCGCGAGCTGGAGGCGGGCGGCCTGGTCTACACCCACCGCGGCGGCCCCGCGCAGGACCTGACGTTCCGGGTCAGCGACGGGCTGCAGGCCAGCC---CCCCGGCCACGCTGAAGGTGGTGGCTGTCCGGCCGGCCATGCAGATCCGCCGTAACACGGGGCTGCGCCTGGCCCAGGGCTCGGCTGCGCCCATCTCGCCCGCCAACCTGTCGGTAGAGACCAACGCCGTGGGGCAGGACGTGAGCGTGCTTTTCCGCGTCGCCGGCGCCCCGCGGTTCGGGGAGCTGCAGAAGCAGGGGGCCGGCGGGGCAGAGGGCACCGAGTGGTGGCCCGTGCAGGCCTTCCACCAGCGGGACGTGGAGCAGGGCCGTGTGCGCTTCCTGAGCACGGACCCGCAGCGCCACATCGAGGACACCGTGGAGAACCTGGCTCTGGAGGTGCAGGTGGGCCAGGAGACCCTGAGCAACCTCTCCTTCCCAGTGACCGTCCAGAGAGCCACAGTGTGGATGCTGCGGCTGGAACCTCTGCACACGCACAACACCCGGCAGGAGGCTCTCACCACGGCCCACCTGGAGGCCGCCCTGGAA------------GA---GGCAGGCTCAAG---CCCCGCCACCTTCCACTACGAAGTGGTTCAGGCCCCCCGGAAGGGAAACCTTCGGCTGCAAGGCATGCGGTTGTCCGACGGCCAGGGCTTCACCCAGGACGACCTGCAAGCCGGCCGGGTGACCTATGGGGCCACGGCGCGAGCCTTGGAGGCGGCGGAGGATGCCTTCCGCTTCCGCGTCTCGGCCCCGCCCCACTTCTCCCCACTCTACACCTTCCCCATCCACATCAGCGGGGACCCCGACGCCCCTGTCCTCACCAACGTCCTCCTCTCGGTGCCCGAGGGCGGCGAGGGCGTCATCTCTGCTGACCACCTCTTCGTCAAGAGTCTCAACAGCGCCAGCTACCTCTACGAGGTCATGGAGAGG-CCCCGCCACGGGAGGTTGGCGTGGCGAGGGGCACGGGACGAGACCGCCACGGTGACCTCCTTCACCAACGAGGACCTGCTGGATGGCCGGCTGGTCTACCAGCACGACGGCTCCGAGACCACGGAGGACGACATCCCGTTCGTGGCGACCCGCCAGGGCGAGGGCAGCGGCGGCATGGCCTGGGAGGAGGTGCGCGGCGTCTTCCGCCTGGCCATCCAGCCTGTGAACGACCATGCCCCCGTGCAGACCGTCAGCCGCGTCTTCCACGTGGTCCGCGGCGGGCAGCGGCTGCTGACCACCGATGACGTGGCCTTCAGCGACGCCGACCTGGGCTTCGCCGACGACCAGCTGGTGCTGACCCGCAAGGACCTCCTGTTCGGCAGCATCGTGGCCGTGGACGAGCCCGCGCGGCCCATCTACCGCTTCACCC-AGGA-GGACCTCAGGAAGAGGCGGGTCCTGTTCGTGCACTCGGGCGCCGACCGTGGCTGGATCCAGCTGCAG--GTCTCCGACGGACAGCACCAGGCCACTGCGCTGCTCGAGGTGC-AGGCCTCGGAG
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902    0 -  26350515 C

a score=1661143.000000
s hg38.chr15_KI270850v1_alt    253474 186 +    430880 CCTTACCTCTGTGTGGCCAATGGCTCCGGCCTCATGGTTCCTCAAGGAGGCCAGGGTACCATCAACATGGCCGAGCTCCACCTGGGCACCAACCTCAACATCTGCAGTAGGGATGAGGCCCACTACCACGTCACAGACAGCCCTCACTGGGGACAGTTGCTCCAAGCCACTCAGCCAGCCACAGCC
s gorGor5.CYUI01015946v1       352033 186 +    378907 CCTTACCTCTGTGTGGCCAATGGCTCCGGCCTCATGGTTCCTCAAGGAGGCCAGGGTACCATCAACATGGCTGAGCTCCACCTGGGCACCAACCTCAACATCTGCAGTGGGGATGAGGCCCACTACCACGTCACAGACAGCCCTCACTGGGGACAGTTGCTCCAAGCCACTCAGCCAGCCACAGCC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62597857 186 + 169600520 CCCTACCTCTCTGTGGCCAGTGGTTCCGGCCTCATGATCCCTCAAGGAGGCCAGGGTACCATCAACACGGCCGAGCTCCACCTGGACACCAACCTCGACATCCACAGTGGGGATGAGATCCACTACCACGTCACAGAGTGTCCTCGCTAGGGACAATTGCTCCGGGCCACTCAGCCAGCCACAGTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106518249 186 - 171882078 CCCTACCTCTCTGTGGCCAGTGGTTCCGGCCTCATGATCCCTCAAGGAGGCCAGGGTACCATCAACACGGCCGAGCTCCACCTGGACACCAACCTTGACATCCACAGTGGGGATGAGATCCACTACCACGTCACAGAGTGTCCTCGCTAGGGACAATTGCTCCGGGCCACTCAGCCAGCCACAGTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6252206 186 -   6271500 CCCTACCTCTCTGTGGCCAGTGGTTCCGGCCTCATGATACCTCAAGGAGGCCAGGGTACCATCAACACGGCTGAGCTCCACCTGGACACCAACCTCGACATCCACAGTGGGGATGAGATCCACTACCACGTCACAGAGTGTCCTCGCTAGGGACAATTGCTCCGGGCCACTCAGCCAGCCACAGTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5144924 186 +   5160157 CCCTACCTCTGTGTGGCCAGTGGCTCTGGCCTCATGGTCCCTCAAGGAGGCCAGGGTACCGTCAACACGGCCGAGCTCCACCTGGACACCAACCTCGACATCCACAGTGGGGATGAGATCCACTACCACGTCACAGAGTGTCCTCGCTAGGGACAATTGCTCCGGGCCACTGAGCCAGCCACAGTC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7712523 186 +  58131712 CCCTACCTCCGTGTGGCCAACGGCTCTGGCCTTGTGGTCCCTCAAGGAGGTCAGGGCACCATTGACACAGCTGAGCTCCACCTGGACACCAACCTTGACATCCGCAGTGGGGATGAGGTGCACTACCATGTCACAGCCGGCCGTCGCTGGGGGCAGTTGCTCTGGGCCACTCAGTCAGTCACAGCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1102824 186 +   1458659 CCCTACCTCTGTGTGGCCAGTGGCTCTGGCCTCACAGTCCCTCAAGGAGGCCAGGGTACCATCAACACGGCCGAGCTCCACCTGGGCACCAACCTCGACATCCGCAGTGGGGATGAGGTCCACTACCACGTCACAGAGTGTCGTCGCTAGGGACAATTGCTCCGGGCCACTCAGCCAGCCACAGTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       313347 186 +   4111199 CCCTACCTCTGTGTGGCCAATGGCTGTGGCCTCATGGTCCCTCAAAGAGGCCAGGGTACCATCAACATGGCTGAGCTCCACCTGGACACCAACCTTGACATCCGCAGAGGGGATGAGGTCCACTACCACGTCACAGAGTGTCCTCGCTAGGGACAATTGCCCCGGGCCACTCAACCAGCCACAGTC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2887623 186 +   3282555 CCCTACCTCCGTGTGGCCAACGGCTCCAGCCTCGTGGTCCCTCAAGGAGGCCAGGGCACCATCGACACGGCCGTGCTCCACCTGGACACCAATCTCGACATCCGCAATGGGGATGAGGTCCACTACCACGTCACAGCCGGCCCTCGCTGGGGACAGCTGCTCCGGGCCGGTCAGCCAGCCACGGCC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       840057 186 +   1024465 CCCTACCTCCGTGTGGCCAACAGCTCCGGCCTTGTGGTCCCTCAAGGAGGCCAGGGCACCATCGACACGGCCGTGCTCCACCTGGACACCAACCTCGACATCCGCAATGGGGATGAGGTCCACTACCACGTCACAACCGGCCCTCGCTGGGGACAGCTGCTCCGGGCTGGTCAGCCAGCCACAGCC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2759893 186 -   3745603 CCCTACCTCCGTGTGGCCAACGGCTCCAGCCTCATGGTCCCTCAAGGAGGCCAGGGCACCATTGACACGGCCGTGCTCCACCTGGACACCAACCTCGACATCCGCAGTGGGGATGAGGTCCACTACCACGTCACAGTCGGCCCTCGCTGGGGACAGCTGCTCCGGGCCGGTCAGCCAGCCACAACC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8733139 186 -  36342412 CCTTATCTCCGTGTGGTCAATGGCTCTAGCCTTGTGGTCCCTCAGGGAGGCCAGGGCACTATCGACACAGCTGTGCTCCACCTGGACACCAACCTTGACATCCGCAGTGGGGATGAGGTCTTCTACCATGTCACTGCTGGCCCTCGCTGGGGGCAGCTGCTCCGGGCCAACCAACCAACCACAGCC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56888369 186 + 124595110 CCCTATCTTCACGTAGCCAATAGTTCTAGTCTCGTGGTTCCTCAAGGAGGCCAGGGCACCATTGACACTGCTGTGCTCCAGCTGGACACCAACCTGGACATACGAAGTGGAAATGAGGTCCACTACCATGTAACCGCTGGTCCTCAGTGGGGGCAGCTGCTCCGGGATGGCCAGTCAGTCACCTCC
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1738461 186 -  40214260 CCCTATCTCCGCGTGGCCAATGGCTCCAGCCTCGTGGTCCCTCAGGGGGGCCAGGGCACCATCGACACAGCCGTGCTCCGCCTGGACACCAACCTAGACATTCGCAGCGGGGATGAGGTCCGCTACCGTGTCACAGCCGGCCCGCACTGGGGGCAGCTGCTCCGGGCCGGCCAGCCGGCCACAGCC
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             204626 186 -   1040364 CCCTACCTCCACGTGGCCGATGGCGCCAGCCTCGTGGTTGCTCAAGGGGGCCAGGGCACCATCGATGCAGCCGTGCTCCCCCTGGACACCAACCTAGACATCCGCAGCGGGGACGAGGTCAGCTACCACGTCACCGCCGGCCCGCGCTGGGGACAGCTGCTCCGGGCCGGCCAGCCAGCCAGAGCC
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             114231040 1176 - 132174527 M
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=7791592.000000
s hg38.chr15_KI270850v1_alt    253660 1041 +    430880 TTCTCTCAGCAGGACCTGCTGGTTGGGGCTGTTTTCTATGGCCACAATGGCAGCCTCAGCTCCCGCAACACCCTGGCCTTCTCAATGGATGTGGGACCAGTGCACACAGATGCCACCCTACAAGTGACCATTGCCCTAGAGGGCCCAGTAGCCCCACTGAAGCTGGCCCAGCACAAGGAGATCTACATCTTCCAGGGAGAGGCAGCTGAGATCAGAAGGGACCAGCTGGAGGTGAGGAGCTGGAGGTGGTGAGCGGG-GT-GTGGACCAGGTAGAGGG----CCTTCCTC-------CCAGCCTCCATGCCGGGAACAC--ATGTG-ACTTGGGCTGTACCTGTGGTGGTCCC-AGCTTGTGTGTGTGCACGTGCCTCAGATGTGCTCCCATATATGTTGTGTTCCCAAGAGTTTCTGGGGAGCTTGCTGTACACCCATCCTCCTGGGAGTGGT-GTGTGCCTCTAGAGCTGGTGTCCACTCATGTCCATGGCATGGCTGAGCATGcagattcctgga--cgccacccagccctacagaatctctgaagtggagcccgagaatctgcattgcagtca----gttccctggGAGGGCATCACGGGTCCTGAACTTTTGGGATTGCTGGCCGTGGAGACAGGC--CGCTGCCTCTCAGACCCCTGTGTACCCCGCTCTCTTCTCAGAGCCCAGACCAGGACCAGGAGGGTCTGTC----AAGGGCTTCTGCTCACCCAGGAACCCCACAGAGCAGCCACGGGCCTTCCAGAGATCT-----------GACATGCCCTGTGACCTCAGGCCAGT-CCTTGCCCGCTCTCAGCCTTACTCTTCCACACTGCTTATTTCGGAGACCCTTCTGG-TCTGCA--TCTGGAGCTTggggcccatggtgagccagcagatctggc--------atcaggaa--ggcct--cat--gggaggaggcagtgtttgggccgggctctgaagagtacaggccattaggagcagagaatggggagtggtattccacgcaaaaggaaca---ttccg--gccgaaggcacaaaa-caggaatgtgagtttggAGGCAGT--TT--AGCCTCTTGTGGATGGCCCA
s gorGor5.CYUI01015946v1       352219 1041 +    378907 TTCTCTCAGCAGGACCTGCTGGTTGGGGCTGTTCTCTATGGCCACAATGGCAGCCTCAGCTCCCGCAACACCCTGGCCTTCTCAATGGATGTGGGACCAGTGCACACAGATGCCACCCTACAAGTGACCATTGCCCTAGAGGGCCCAGTAGCCCCACTGAAGCTGGCCCAGCACAAGAAGATCTACATCTTCCAGGGAGAGGCAGCTGAGATCAGAAGGGACCAGCTGGAGGTGAGGAGCTGGAGGTGGTGAGCGGG-GT-GTGGACCAGGTAGAGGG----CCTTCCTC-------CCAGCCTCCATGCCGGGAACAC--ATGTG-ACTTGGGCTGTACCTGTGGTGGTCCC-AGCTTGCGTGTGTGCACGTGCCTCAGATGTGCTCCCATATATGTTGTGTTCCCAAGAGTTTCTGGGGAGCTTGCTGTACACCCATCCTCCTGGGAGTTGT-GTGTGCCTCTAGAGCTGGTGTCCACTCATGTCCATGGCATGGCTGAGCATGcagattcctgga--cgccacccagccctacagaatctctgaagtggagcccgagaatctgcattgcagtca----gttccctggGAGGGCATCGCAGGTCCTGAACTTTTGGGATTGCTGGCCGTGGAGACAGGC--CGCTGCCTCTCAGACCCCTGTGTAGCCTGCTCTCTTCTCAGAGCCCAGACCAGGACCAGGAGGGTCTGTC----AAGGGCTTCTGCTTACCCAGGAACCCCACAGAGCAGCCACAGGCCTTCCAGAGATCT-----------GACATGCCCTGTGACCTCAGGCCAGT-CCTTGCCCGCTCTCAGCCTTACTCTTCCACACTGCTTATTTCGGAGACCCTTCTGG-TCTGCA--TCTGGAGCTTggggcccatggtgagccagcagatctggc--------atcaggaa--ggcct--cat--gggaggaggcagtgtttgggctgggctctgaagagtacaggccattaggagcagagaatggggagtggtattccaggcaaaaggaaca---ttccg--gccaaaggcacaaaa-caggaatgtgagtttggaggcagt--tt--agcctcttgtggatggccca
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62598043 1048 + 169600520 GTCTCCCAGCAGTACTTGCTGCATGGGGCCATTCTCTACGGCCACAATGGCAGCCTCAGACCCCGCAACACCCTGGCCTTCTCAATGGAAGCAGGGCCAGTGCACACAGATGCCACACTACAAGTGACTGTTGCCCTAGAGGGCCCACTAGCCCCACTGAAGCTGGCCCGGCACAAGAAGATCTACATCTTCCAGGGAGAGGCAGCTGAGATCAGAAGAGACCAGCTGGAGGTGAGGAGCTGGAGGTGGTGAGCGGG-GTAGTGGACCAGGTAGAGGG----CCTCCCGC-------CCAGCCTCCATGCCAGGTACAC--ATGTG-ACTTGGGCTGTGGCTGTGGTGGTCCC-AGATTGTGTGTGTGCATGTGTCTCAGATGTGCTACTGTATATGTTGTGTTCCCAAGAGTTTTTGGGGAGCCTGCTGTACACCCATCCTCCTGGGAGTTGT-GTGTGCCTCTAGAGGTCGTGTCCACTCGTGTCCATGGCGTGGCTGAGCatgcagattcctgca--ccccactcaggcctgcagaatctctgaagtggagcccgagaatctgcattgcagtca----gttccctggGAGGGCATCACGGGTCCTGAACTTTGGGGATGGCTGGCCGTGGAGACAGGC--CACTGCGCCTCAGACCCCCATGTATCCCGCTCTCTTCTCGGAGCCCAGACCAGGACTAGGAGGGTCTGTC----AAGGGCTTCTGCCCACCCAGGAACCCCACAGAGCAGCCACGGGCCCTCCAGCGAGCTCACT-------GACATGCCCTGTGACCTCAGGCCAGT-TCTTGCCTGCTCTCAGCCTTATTCTCCTACACTGCTCATTTCGGGGACCCTTCTGG-TCTGCATGTCTGGAGCTTggggcccacggcaagccagcagatctggc--------atcaggaa--ggcct--cat--gggaggaggcagtgtttgggccgggctctgaagagcacaggccattgggagcagagaatggggagtggtattccaggcaaaaggaaca---ttccg--ggcaaaggcacagaa-caggaatgtgagtttgggggtggt--tt--agcctcttgtggatggccca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106518435 1048 - 171882078 GTCTCCCAGCAGTACTTGCTGCATGGGGCCATTCTCTACGGCCACAATGGCAGCCTCAGACCCCGCAGCACCCTGGCCTTCTCAATGGAAGTAGGGCCAGTGCACACAGATGCCACACTACAAGTGACTGTTGCCCTAGAGGGCCCACTAGCCTCACTGAAGCTGGCCCGGCACAAGAAGATCTACATCTTCCAGGGAGAGGCAGCTGAGATCAGAAGAGACCAGCTGGAGGTGAGGAGCTGGAGGTGGTGAGCGGG-GTAGTGGACCAGGTAGAGGG----CCTCCCGC-------CCAGCCTCCATGCCAGGTACAC--ATGTG-ACTTGGACTGTGGCTGTGGTGGTCCC-AGATTGTGTGTGTGCATGTGTCTCAGATGTGCTACTGTATATGTTGTGTTCCCAAGAGTTTTTGGGGAGCCTGCTGTACACCCATCCTCCTGGGAGTTGT-GTGTGCCTCTAGAGGTTGTGTCCACTCGTGTCCATGGCGTGGCTGAGCATGcagattcctgca--ccccacccaggcctgcagaatctctgaagtggagcccgagaatctgcattgcagtca----gttccctggGAGGGCATCACGGGTCCTGAACTTTGGGGATGGCTGGCCGTGGAGACAGGC--CACTGCGCCTCAGACCCCCATGTATCCCGCTCTCTTCTCGGAGCCCAGACCAGGACTAGGAGGGTCTGTC----AAGGGCTTCTGCCCACCCAGGAACCCCACAGAGCAGCCACGGGCCCTCCAGCGAGCTCACT-------GACATGCCCTGTGACCTCAGGCCAGT-TCTTGCCTGCTCTCAGCCTTATTCTCCTACACTGCTCATTTCGGGGACCCTTCTGG-TCTGCATGTCTGGAGCTTggggcccacggcaagccagcagatctggc--------atcaggaa--ggcct--cat--gggaggaggctgtgtttgggccgggctctgaagagcacaggccattgggagcagagaatggggagtggtattccaggcaaaaggaaca---ttccg--ggcaaaggcacagaa-caggaatgtgagtttggGGGTGGT--TT--AGCCTCTTGTGGATGGCCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6252392 1048 -   6271500 GTCTCCCAGCAGTACTTGCTGCATGGGGCCATTCTCTACAGCCACAATGGCAGCCTCAGACCCCGCAGCACCCTGGCCTTCTCAATGGAAGCAGGGCCAGTGCACACAGATGCCACACTACAAGTGACTGTTGCCCTAGAGGGCCCACTAGCCCCACTGAAGCTGGCCCGGCACAAGAAGATCTACATCTTCCAGGGAGAGGCAGCTGAGATCAGAAGAGACCAGCTGGAGGTGAGGAGCTGGAGGTGGTGAGCGGG-GTAGTGGACCAGGTAGAGGG----CCTCCCGC-------CCAGCCTCCATGCCAGGTACAC--ATGTG-ACTTGGGCTGTGGCTGTGGTGGTCCC-AGATTGTGTGTGTGCACGTGTCTCAGATGTGCTCCTGTATATGTTGTGTTCCCAAGAGTTTTTGGGGAGCCTGCTGTACACCCATCCTCCTGGGAGTTGT-GTGTGCCTCTAGAGGTCGTGTCCACTCGTGTCCATGGCGTGGCTGAGCatgcagattcctgga--ccccactcagccctacagaatctctgaagtgaagcccaagaatctgcattgcagtca----gttccctgggAGGGCATCACGGGTCCTGAACTTTGGGGATAGCTGGCCGTGGAGACAGGC--CACTGCGCCTCAGACCCCCATGTATCCCGCTCTCTTCTCGGAGCCCAGACCAGGACTAGGAGGGTCTGTC----AAGGGCTTCTGCCCACCCAGGAACCCCACAGAGCAGCCACGGGCCCTGCAGCGAGCTCACT-------GACGTGCCCTGTGACCTCAGGCCAGT-TCTTGCCTGCTCTTGGCCTTATTCTCCTACACTGCTCATTTCGGGGACCCTTCTGG-TCTGCATGTCTGGAGCTTggggcccacggcaagccagcagatctggc--------atcaggaa--ggcct--cat--gggaggaggccgtgtttgggctgggctctgaagagcacaggccattgggagcagagaatggggagtggtattccaggcaaaaggaaca---ttccg--ggcaaaggcacagaa-caggaatgtgagtttgggggtggt--tt--agcctcttgtggatggccca
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5145110 1048 +   5160157 GTCTCCCAGCAGTACTTGCTGCATGGGGCCATTCTCTACGGCCACGATGGCAGCCTCAGACCCCACAGCACCCTGGCCTTCTCAATGGAAGCAGGGCCAGTGCACACAGATGCCACACTACAAGTGACTGTTGCCCTAGAGGGCCCACTAGCCCCACTGAAGCTGGCCCGGCACAAGAAGATCTACATCTTCCAGGGAGAGGCAGCTGAGATCAGAAAGGACCAGATGGAGGTGAGGAGCTGGAGGTGGTGAGCGGG-GTAGTGGACCAGGTAGAGGG----CCTCCCGC-------CCAGCCTCCATGCCAGGTACAC--ATGTG-ACTTGGGCTGTGGCTGTGGTGGTCCC-AGATTCTGTGTGTGCACATGTCTCAGATGTGCTCCTGTATATGTTGTGTTCCCAAGAGTTTTTGGGGAGCCTGCTGTACACCCATCCTCCTGGGAGTTGT-GTGTGCCTCTAGAGGTCGTGTCCACTCGTGTCCATGGCGTGGCTGAGCatgcagattcctgga--ccccacccagccctacagaatctctgaagtgaagcccaagaatctgcattgcagtca----gttccctgggAGGGCATCACGGGTCCTGAACTTTGGGGATGGTTGGCTGTGGAGACAGGC--CACTGCGCCTCAGACCCCCATGTATCCCGCTCTCTTCTCGGAGCCCAGACCAGGACTAGGAGGGTCTGTC----AAGGCCTTCTGCCCACCCAGGAACCGCACAGAGCAGCCACGGGCCCTGCCGCGAGCTCACT-------GACATGCCCTGTGACCTCAGGCCAGT-TCTTGCCCGCTCTTGGCCTTACTCTCCTACACTGCTCATTTCGGGGACCCTTCTGG-TCTGCATGTCTGGAGCTTggggcccacggcaagccagcagatctggc--------atcaggaa--ggcct--cat--gggaggagacagtgtttgggccgggctctgaagagcacaggccattgggagcggagaatggggagtggtattccaggcaaaaggaaca---ttccg--ggcaaaggcacagaa-caggaatgtgagtttgggggtggt--tt--agcctcttgtggatggccca
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7712709 1038 +  58131712 TTCTCCCAGGAGGACCTGCTAGACGGGGCCATTCTCTACCGCCTCAATGGCAGCCTCAGAACCCGTGACACCCTGATCTTCTCAATGGAAATGGGGCCTGTGCACACGGATGCCACGCTACAAGTGACCGTTGCCCTAGAGGGCCCACTGGCCCCACTGAAGCTGGTCCGGCACAAGAAGATCTATGTCTTCCAGGGAGAGGCAGCTCAGATCAGAAGGGGCC--------------AGCTGGAGGTGGTGAGCGGG-GGTGTGGGCCAGGTAGAGGG----CCTCCCCC-------TCAGCCTCCATGCCAGGTACAC--ATGTG-ACTTGGGCTGTGGCTGTGGTGGTCCC-AG-TTGCATGTGTGCAGGGGTCTCAGATGTGCTCCCGTATATGTTGTGCTCCCAAGAGTTTCTGGGGAGCTTGCTGTACACCCATCCTCCTGGGAGTTGT-GTGTGCCTCCAGAGGTCGTGTCCACTCATGTCCATGGCGTGGCTGAGCatgcagattcctggg--ccccaccaagccctactgaatctctgaagtggagcccaagaatctgcgttGCAGTCA----GTTTCCTGGGAGGGCATCATGGGTCCTGAACTTTGGGGATTGCTGGCCATGGAGACAGGT--GGCTGCTCTTTAGATCCACATATTCCCTGCTATTTTCTCAGAGCCCAGACCAGGACTAGGAGGGTCTGTC----AAGGGCTTCTACCCACCCAGGAACCCCGCCGAGCAGCCACGGGCCCTCCAGCAGGCTCACTCCAGCAGGACTTGCCCTGTGACCTCAGGCCAGT-CCTTGCCCGCTC--AGCCTTACTCTCCCACACTACTTATTTCGGAGATCCTTCTGG-TCTGCATGTCTGGAGCTTGGGGCCGACAGTGAGCCAGCAGATCTggc--------atcaggaa--ggcct--tgc--ggaaggaggcagtgtttgggccaggctctgaagagcacaggccatcggtagcagaaaatggggagtggtattccaggcaggaggaaca---ttcca--gggaaaggcatagaa-caggaatgtgagtttgAGGGTGGT--TT--AGCCTCTTGTGATTGGCCCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1103010 1048 +   1458659 GTCTCCCAGCAGTACTTGCTGCATGGGGCCATTCTCTACGGCCACAATGGCAGCCTCAGACCCCGCAGCACCCTGGCCTTCTCAATGGAAGCAGGGCCAGTGCACACAGATGCCACACTACAAGTGACTGTTGCCCTAGAGGGCCCACTAGCCCCACTGAAGCTGGCCCGGCACAAGAAGATCTACATCTTCCAGGGAGAGGCAGCTGAGATCAGAAAAGACCAGCTGGAGGCGAGGAGCTGGAGGTGGTGAGCGGG-GTAGTGGACCAGGTAGAGGG----CCTCCCGC-------CCAGCCTCCATGCCAGGTACAC--ATGTG-ACTTGGGCTGTGGCTGTGGTGGTCCC-AGATTCTGTGTGTACACATGTCTCAGATGTGCTCCTGTATATGTTGTGTTCCCAAGAGTTTTTGGGGAGCCTGCTGTACACCCATCCTCCTGGGAGTTGT-GTGTGCCTCTAGAGATCTTGTCCACTCGTGTCCATGGCGTGGCTGAGCatgcagattcctgga--ccgcacccagccctacagaatctctgaagtggagcccgagaatctgcattgcagtca----gttccctggGAGGGCATCACGGGTCCTGAACTTTGGGGATTGCTGGCCGTGGAGACAGGC--CACTGCGCCTCAGACCCCCATGTATCCCGCTCTCTTCTCGGAGCCCAGACCAGGACTAGGAGGGTCTGTC----AAGGGCTTCTGCCCACCCAGGAACCGCACAGAGCAGCCACGGGCCCTGCAGTGAGCTCACT-------GACATGCCCTGTGACCTCAGGCCAGT-TCTTGCCCGCTCTTGGCCTTACTCTCCTACACTGCTCATTTCGGGGACCCTTCTGG-TCTGCATGTCTGGAGCTTggggcccacggcaagccagcagatctggc--------atcaggaa--ggcct--cat--gggaggagacaatgtttgggccgggctctgaagagcacaggccattgggagcagagaatggggagtggtattccaggcaaaaggaaca---ttccg--ggcaaaggcacagaa-caggaatgtgagtttgggggtggt--tt--agcctcttgtggatggccca
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       313533 1036 +   4111199 GTCTCCCAGCAGCACTTGCTGAATGGGGCCGTTCTCTACGGCCACAATGGCAGCCTCAGACCCCACAGCACCCTGGCCTTCTCAATGGAAGCAGGGCCAGTGCACACACATGCCACACTACAAGTGACTGTTGCCCTAGAGGGCCCACTAGCCCCACTGAAGCTGGCCCGGCACAAGAAGATCTACATCTTCCAGGGAGAGGCAGCTGAGATCACAAGGGACC--------------AGCTGGAGGTGGTGAGCGGG-GTAGTGGACCAGGTAGAGGG----CCTCCCGC-------CCAGCCTCCATGCCAGGTACAC--ATGTG-ACTTGGGCTGTGGCTGTGGTGGTCCC-AGGTTGTGTGTGTGCACGTGTCTCAGATGTGCTCCTGTGTATGTTGTGTTCCCAAGAGTTTTTGGGGAGCCTGCTGTACACCCATCCTCCTGGGAGTTGG-GTGTGCCTCTAGAGGTCGTGTCCACTCGTGTCCATGGCATGGCTGAGCAGGcagattcctgga--ccccacccagccgtacagaatctctgaagtgaagcccaagaatctgcattgcagtga----gttccctgggagagc-tcacgggtcctgaactttggggattgctgGCCATGGAGACAGGC--CACTGCGCCTCAGACCCCCGTGTATCCCGCTCTCTTCTCGGAGCCCAGACCAGGACTAGGAGGGTCTGTC----AAGGGCTTCTGCCCACCCAGGAACCCCACAGAGCAGCCACGGGCCCTCCAGCGAGCTCACT-------GACATGCCCTGTGACCTCAGGCCATT-TCTTGCCCGCTCTTGGCCTTACTCTTCTACACTGCTTATTTCGGAGACCCT------TCTGCATGTCTGGAGCTTggggcccatggcaagccagcagatctggtatcaggaaatcaggaa--ggcct--cat--gggaggaggcagtgtttgggccgggctctgaagagcacaggccattgggagcagagtatggggagtggtattccaggcaaaagagaca---ttccg--ggcaaaggcacagaa-cgggagtgtgagtttggGGGTGAT--TT--AGCCTCTTGTGGATGGCCCA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114232219 1004 - 132174527 TTTTCCCAGCAGGACTTGCTTGACGGGTCCA-TCTCTACAGCCACAATGGCAG-CTCAGCCCCCGAGACACCTG---CTTCTCCGT-GAAGCGGGTCCAGTGCACACGGATG-CACCCTACAAGTGACCATTGCCCTGGAGAGCCCACTGGCCCCACTGAAGCTGGTCCGGCACAAGAAGATCTACGTCTTCCAGGGAGAGGCAGCTGAGATCAGAAGGGACCAGCTGGAGGTAAGGAGCTAGGGGCAGTGAGCGGG-GGTGTGGGCCAGGTAGA-GG----CCTTCCTC-------CCAGCCTCCATGCCAGGTACAC--ACATG-ACTTGGGCTGTGGCTGTGGCGGCTCC-AGGTTGC--GTGTGCAGAGGCCTCGGATGTGCTCCTGTCTGTGTTGTGTTCCTAAGAATTTCTGGGGAGCTTGCTGTAC-CCCATCCTCCTGGGGGTTAT-GCATGCCTCCGGAGGTCGTG-------------ATGGTGTGGCTGAGCatgcagattcctggg---tcctcccagccccacagaatctctgaggtggagcccgagaatctgcattgcagtca----gtttcctgggaaggtatcacaggtcctgagctttggggattgctgACCGTGGAGACAGGC--CACTGCCCCTCAGACCTCCATGTCCCCCACTCTTTTCTCAGAGCCCAGACTGGGTCCAGGAGGGTCTATG----AAGGGCTTCTGCCCACCCAGGAACCCCACAGAGCAGCCACGGGCCCTCCAGCGGGGTCAC--------AACTTGCGCTGTGACCTCAGGCCGGT-CCCTGCCCGCTCGCGGCCTCACTCTCCTACACTCT-------------CCTTCTGG-TCTGCACATCTggagcttggggcagatggc-agccagcagatctggt--------gtcaggat--gggct--cct--gggatgaggcagcatttgggccgagctctgaagagcacaggccatctg-agcagaggataggaagtggtatttcaggcagaaggagca---ttccg--ggcaaaggcacagag-caggaatgtg---tttggggtagt--tt--agcctcttgtggctgaccca
i calJac3.chr10             M 1176 C 0
s saiBol1.JH378276            2887809  991 +   3282555 TTCTCCCAGCAGGACCTGCTGGATGGGGCCATTCTCTACAGCCACAATGGCAGCCTCAGCCCCCGAGACACCCTGGCCTTCTCCGTGGAAGCGGGGCCAGTGCACACAGATGCCACCCTACAAGTGACCATTGCCCTGGAGAGCCCACTGGCCCCACTGAAGCTGGTCCAGCACAGGAAGATCTACGTCTTCCAGGGAGAGGCAGCTGAGATCAGAAGGGACCAGCTGGAGGTGAGAAGCTGGGGGCGGTGAGCGGG-GGCGTGGGCCAGATAGA-GG----CCTTCCTC-------CCAGCCTCAGTGCCGGGTACAC--GCATG-ACCTG------GGCTGCGGCGGCTCC-AGGTTGCATGTGTGCACGGGCCTCACATGTGCTCCCGTCTGTGTTGTGTTCCTAAGACTTTCTGGGGAGCTTGCTGTAC-CCCATCCTCCTGGGAGTTGT-GTGTGCCTCCAGAGGTCGTG-------------ATGGCGTGGCTGAGCGTGcagattcctgggccccccccccagccccacagaatctctgaggtggagcccaagaatctgcactg----ca----gtttcctggGAAGGTATCA-GGGTCCTGAGCTTTGGGGATTGCTGACCGTGGAGACAGGC--CGCTGCCCCTCAGACCCTCATGTCCCCCGCTCTTTTCTCAGAGCCCAGACTGGCTCTGGGAGGGTCTATC----AAGGGCTTCTGCCCACCCAGGAACCCCACAGAGCAGCCACGGGCCCTCCAGAGGGCTCAC--------AACTTGCGCTGTGACCTCAGGCCGGT-CCCTGCCCGCCCGCGGCCTCACTGTCCTACACTGT----------------------------CATCTGGAGCTTGGGGCggacggc-agccagcagatctggc--------atcaggat--gggct--cgt--gggatgaggcagcgtttgggccgagctctgaagagcacaggccgtctg-agcagagaatgggaagtggtattccaggcagaaggaaca---ttccg--ggcaaaggcacagag-taggaacgtg---tttggggtagt--tc--ggcctcttgtggctgaccca
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       840243 1004 +   1024465 TTCTCCCAGCAGGACCTGCTGGATGGGGCCATTCTCTATAGCCACAATGGCAGCCTCAGCCCCCGAGACACCCTGGCCTTCTCTGTGGAAGCGGGGCCAGTGCACACGGATGCCATCCTACAAGTGACCATTGCCCTGGAGAGCCCACCGGCCCCACTGAAGCTGGTCCAGCACAAGAAGATCTACGTCTTCCAGGGAGAGGCAGCTGAGATCAGAAGGGACCAGCTGGAGGTGAGGAGCTGGGGGTGGTGAG-GGG-GGTGTGGGCCAGGTAGA-GG----CCTTCCTC-------CCAGCCTCCATGCCGGGTACAC--GCACG-ACCTG------GGCTGTGGCGGCTCC-AGGTTGA-TGTGTGCACGGGCCTCAGATGTGCTCCCATCTATGTTGTGTTCCTAAGACTTTCTGGGGAGCTTGCTGTAC-CCCATCTTCCTGGGAGTTGT-GTGTGCCTCCAGAGGTTGTG-------------ATGGCATGGCTGAGCacgcagattcctggg---cccccccagccccacagaatctctgaggtggagcccgagaatctgcattgcagtca----gtttcctggGAAGGTATCACAGGTCCTGAGCTTTGGGGATGGCTGACCGTGGAGACAGGC--CGCTGCCCTTCAGACCCCCGTGTCCCCCGCTCTTTTCTCAGAGCCCGGACTGGCTCTAGGAGGGTCTATC----AAGGGCTTCTGCCCACCCGGGAACCCCATAGAGCAGCCACGGGCCCTCCAGCGGGCTCAC--------AACTTGCGCTGTGACCTCAGGCCGGT-CCCTGCCCGCTCTCGGCCTCACGCTCCTGCACTGT--------------CCTCTGG-TCTGTACGTCTGGAGCTTGGGGCggatggc-agccagcagttctggc--------gtcaggat--gggct--cgc--gggatgaggcagcgtttgggccgagctctgaagaacacaggccgtctg-agcagagaatgggaagtggtattccaggcagaaagaaca---ttccg--ggcaaaggcacagag-caggaatgtg---tttggggtagt--tt--agcctcttgtggctgACCCC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2760079 1000 -   3745603 TTCTCCCAGCAGGACCTGCTGGACGGGGCCATTCTCTATAGCCACAATGGCAGCTTCAGCCCCCGAGACACCCTGGCCTTCTCCGTGGAAGGGGGGCCAGTGCACACGGATGCCACCCTACAAGTGACCATTGCCCTGGAGAGCCCACTGGCCCCACTGAAGCTGGTCCGGCACAAGAAGATCTACGTCTTCCAGGGAGAGGCAGCTGAGATCAGAAGGGACCAGCTGGAGGTGAGGAGCTGGGGGCGGTGAGCGGG-GGTGTGGGCCAGGTAGA-GG----CCTTCCTC-------CCAGCCTCCATGCCGGGTACAC--ACATG-ACCTG------GGCTGTGGCGGCTCC-AGGTTGCATGTGTGCACAGGTCTCAGATGTGCTCCCGTCTATGTTGTGTTCCTAAGACTTTCTGGGGAGCTTGCTGTAC-CCCATCCTCCTGGAAGTTGT-GTG------CAGAGGTCATG-------------ATGGCGTGGCTGAGCatgcagattcctggg----ccccccagccccacagaatctctgaggtggagcccgagaatctgcattgcagtca----gtttcctgggaaggcatcatgggtcctgagctttgggcattgctgACCGTGGAGACAGGC--CGCTGCCCTTCAGACCCCCATGTTCCCCGCTCTTTTCTCAGAGCCCAGACTGGGTCCAGGAGGGTCTATC----AAGGGCTTCTGCCCACCCGGGAACCCCACAGAGCAGCCACGGGCCCTCCAGCAGGCTCAC--------AACTTGCGCTGTGACCTCAGGCTGGT-CCCTGCCCGCTCGCGGCCTCACTCTCCTAAGCTCT-------------CTTTCTGG-TCTGCACGTCTGGAGCTTGGGGCggatggc-agccagcagttctggc--------cgcaggtt--gggct--cgc--gggatgaggcagcgtttgggccaagctctgaagagcacaggccgtctg-agcagagtatgggaagtggtattccaggcagaaggaacg---ttccg--ggcaaaggcacagag-caggaatgtg---tttggggtagt--tt--agcctcttgtggctgaccca
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8733325 1058 -  36342412 TTCTCCCAGCAGGACCTGCTAGATGGGGCCGTTCTTTACAGCCACAATGGTAGCCTTAGCCCCCATGACACCCTGGCCTTCTCTGTGGAAGCAGGGCCAGTGCGCACAGATGCCACCCTACAGGTGACCATTGCCCTAGAGGGGCCACTGGCCCCACTGCAGCTGGTCCAGCACAAGAAGATCTATGTCTTCCAAGGAGAAGCCACTGAGATCAGAAGGGACCAGCTACAAGTAAGGAGCTGGAGGTGGGAGGCAAG-GGTATGGGCCAG-TAGAGGG-GCCCTTCCATC-------CCAGGCTTCATGCTGAGTGTGCTTGTATG-ATTCCAAATGTGACCATGGTGGCTCCTGGGTTGAGTGTTTGAACA---CTTGGGTGTGTACCTGTGCATGTCACATTCCCAAGAGTTTCTGTGGAGTTTGTTGTACATACATCTGTCTGTGAGTTAT-GTGTCCCTTCAGATGTCATTTCCACACATGTACATACCGTGgctagccatgtggattcctggg--ccccacctagactcacagattctctaaagtggggcctgagaatctgtattctagtaa----gttccttgggagagtatcatgggtactgagctttgaggattgctgACCATGGAGATGGACTTCACTGCCACTCAGGTCCCCATGTCCTCAGCTCTTTTCTTGGACCAAAGGCCAGGACTAAGAGGGTCTGTCTATTAAGGGCTGCTGTTCATTCGGGGACCTCACAGAACAAACAAA---CAACCAGCAGGCTcaat-------gacttgctgtgtgacctcaggcctgtcccttgctctctcttgaccttattctcctACACTCCTAATTTCTGAGACCCTTCTGGTTCTGGATGTCTGGACTTGGGGGAAGACTATGAGCAAACAAATCTGGT--------Cttaggaa--ggcct--tgttctggaggaggcagcatttgagccaggctttgaagaatgtggagtgtcaatagcagagaagaggggatggtattgcaggcaggaggaaca---ctcca--agcaaagggaaagaattaggaaTGTGAG-TTGGGGGTGAT-CTT--AGCTATTTGTGGTTCAACCA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56888555  890 + 124595110 TTCTCCCAACGGGACTTGCTCGATGGGGCCATCCTCTACAGCCACAATGGCAGCCTCAGCCCCCAAGACACCCTGGCGTTTTCTGTGGCAGCAGGGCCAGTACACACTAACACCTTCCTACAAGTGACCATTGCCCTCGAGGGTCCCCTGGCCCCACTGCAACTGGTGCAGCACAAAAAGATCTACGTCTTCCAGGGGGAAGCGGCTGAGATCAGAAGGGACCAGCTAGAGGTAA---------GGCAGTGCACGAG----GCCTGCCAAGCTGAGGG----T-----------------ACTTCCATGAGGGGGGCGT-------------------TCCTGTGG-GGATGC-AGGTCTTAGGAGTATTACAGCTTCAGTAGT-CACCTGTATGTGTTGTAGTTCTGCATGTGTCTAGGA----------ACATACACCTACCTGTTAAGTGTCACGCACCTCCAGAGATCACATATACATGTGTCCTTGCTATGGATAGCCGTGTAAAAT-CTGGG--TTCCAGCCAGATCCACAGAATCTCTGAAGCAGAGACCAAGAGTGTATATCCTGTCAC----AGTCCCTATGAGGTTACCATGAGGGGTGACCTTTAGGAG-----------------------CGCTGCCCCTCAGATCCACAGGTCCTTAGCTCTTTCCCTAGACTCCACAACAGAACTGTGAGGGCCTGT-----GATGGTGTCTGTTAACTCAGGGAGCTCACAGCGCAAT-----GCTGACCAGCTGGCTCACT-------GCCTTAC--TGTGA---------AGG-CCCAG----------------------------------TTTTGAGGCCCTTCCAGTTCTGAGTGTTTGGACTTTGAGAAAGACCATGACTAAACA-------T--------GTCAGGAAGTGTCCA--CAC--CAGAGGAGGCAGCATATGaaccaagctttggtg-gtgcacacctttaa----------------------tcccag----------ca---ctcaggaggcagaggca-ggca-gagctctttgaattcaaggccaac--ct--ggtctattaagagagttcca
i mm10.chr9                 C 0 I 537
s canFam3.chr30               1738647  821 -  40214260 TTCTCCCAACAGGACCTGCTGGACGGGGCCGTCCTCTACAGCCACAACGGCAGCCTGAGCCCGCAGGACACCCTGGCCTTCTCCGTGGAGGCAGGGCCTGTGCTCACGGATGCCACCCTGCAGGTGACCATTGCCTTGGAGGGGCCATTGGCCCCACTGCATCTGGTCCAGAACAAGAAGATCTACGTCTTCCAGGGGGAGGCAGCTGAGATCAGAAAGGATCAGCTGGAGGTAAAAGGCCGAGGG--GCGAGTGGAAGTCATAGGCCAGAGAAGGGG-GCCCCTTCCAT-------CCAGCCTTCACGCCCTGTGTGC--GTGGACGTTTGGGGGGTACCGGTGGGGACTCCTGGGTTGGGTG-GTGTCCGCGCTTTGGGGATGTGCCTG-----------------ACGGTCTCCGGGGAGTTTG---------------CCTCAGAGTTAT-GGGGGCCTCCACCTGTCAGGTGCACACATGTGCGTGC------------TACGGATTC--GGA-----------------------------------------GAATCTGTTTTCTAATAAATTCGTTCCCTGGGGGATTCTCCTGGGC-----ACCTTGAGGAC---------------CGGGC--CTC---------------------------------------------------------AGGACCTGGG----GAGAGCCGCTGACCATCCAGGAA--TCAGAGAGCAACCA--------------GGCCTACT-------GACTCG----GTGGCACACGGCCGAT-TTCTG---------------------------------------AGCCCCTGGTGGGTCCAGCTGCCTGGA-TTTGGGGCAGACGGTGGCTGGCCCTGTCTGGC--------ATCAGAAA--GGCTTGGCCT--TGACGGAGGCGGCACTGGAGTCCGGCTTTGCAGAGTCTGGGGTTTCAGTAGCAGGGGATG--------------------AAAGGACACCCCTCCA--GGCAGAGGCACAGGATCAGGGATGTGAG-CTGGGGGTGGTGTGT--GGCCTCCTGCAGCCGGGCCA
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             204812  966 -   1040364 TTCTCCCAGCAGGATCTGCTGGACGGGGCTGTTCTCTACAGCCACAACGGCAGCCTTAGCCCCCGCGACACCCTGGCCTTCTCCGTGGAGGCCGGGCCCGTGCACACAAATGCCACCCTACATGTGACCCTTGCCCTGGAAGGCCCGCTGGCCCCACTGCGCCTGGTCCAGCACAAGAAGATCTACGTCTTCCAGGGGGAGGCGGCCGAGATCAGAAGGGACCAGCTGGAGGTAAGGGGCTGGGGGTAACGTGCGGG-GGTATGGCCCAGGGAGAGGGGGCCCTGTCTGCACCGGCACCGGCCTTCGTGCC----------GTATG-TTCTGGGCTGTGACAATGGCTGCTCGGGGAGCAGGTGTGTGCACATGTCTTGGGTGTGAGCTTAAACATG------------GACATGCGGATCTGTATGTTGTAA-CACATTTGCCCGTGAGGGGT-GTGTGACTCT-------GTGTCC---TGTGTACGTGCTGTGGCTCAGCatgcagattccaggg---cccacccaggcacatggaatctctgaagtggagcctaagactctgtactcaaatac----gttcactagaatattgttgtgggtgctaagctttgaggactgctgGCCACGGAGACGGGCTCAGCTGTCCCACACACCTCCCGATAGTCAGCTCT-TTCCCAGACCTCAGAA------------------------AGGGGCTGCTGGCCACCCAGGAA--------------------CCATCCAGCAGGCccact-------gacctgctgtgtggccacagccctgtcccttgccctctctgggccttattctcctccactgtcaagtTCTGAGGCCCTTTGGGTTCTGGCTATCTGGACTTTGGGGCAAACTGA-------------------------GGCTAAAA---------TGc--tagaggaagcagcatttgagcc-agctttgaagagtctggggggtcgatagcagggt---gggggtggtattccaggca-aagggact---gtccc--tgcaaaggctgagaaccaggagtgcgagtttggggctggt--gtgcagcct-tcgtggctgggtca
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902    0 -  26350515 C

a score=1882580.000000
s hg38.chr15_KI270850v1_alt    254701 411 +    430880 TCAGGTGAGGGAGCCCAT-GTGGCCTTTGGGGTGT----GAGCTCTGTAGGGCCTGTGCTGGGGGTGCCTGTGCCTCTAGGAGGGGTGGG---GTGGGGTGGGGCAGGGCACCCTCTGATGGTCCTGGGTGGTAATAGCAGGGGTTGGGGAGGATGCTGCCAGCAAACCAGCCA---CAGGCCTGAACAGATCCTGAGCAGG-G-GGC-CTGTGTGCGTGTG--C--------------------ACACACGCATGTGTACCTGTACCTGTGTGA--CTGCGTCAGCATCTGATGAACTCATATGTCTGTGTCACTGAGTCTGGGGACATGTGATTATGCACCTCCCTGAGGGAGTGCATCTCAAGCTGT-TGACCGACACCCCGTAACCATGTGTGGGGTGGGTATTAAC--ATGT---gaccagctgg-ggcaacccagtgaaaccccatctct
s gorGor5.CYUI01015946v1       353260 414 +    378907 tcaggtgagggagCCCAT-GTGGCCTTTGGGGTGT----GAGCTCTGTAGGGCCTGTGCTGGGGGTGCCTGTGCCTCTAGGAGGGGTGGG---GTGGGGTGGGGCAGGGCACCCTCTGATGGTCCTGGGTGGTAATAGCAGGGGTTGGGGAGGATGCTGCCAGCAAACCAGCCA---CAGGCCTGAACAGATCCTGAGCAGG-G-GGC-CTGTGTGCGTGTGTGC--------------------ACACACGCATGTGTACCTGTACCTGTGTGA--CTGTGTCAGCATCTGATGAACTCATATGTCTGTGTCACTGAGTCTGGGGACATGTGATTATGCACTTCCCTGAGGGAGTGCATCTCAAGCTGTGTGACCGACACCCCGTAACCATGTGTGGGGTGGGTATTAAC--ATGT---gaccagctgg-ggcaacccagtgaaaccccatctct
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62599091 395 + 169600520 tcaggtgagggagCCCAT-GTGGCCTTTGGGGCAT----GAGCTCTGTAGGGCCTGTGTTGGGGGCACCTGTGCCTCTAGGAGGGGTGGG---GCGGGGCGGGGC-------------ATGATCCTGGGTGGTAATAGCAGGGGTTGGGGAAGACACTGCCAGCAAACCAGCCA---CAGGCCTGAACAGATCCTGAGCAGGGG-GGC-CTGTGTGTGTACATGT--------------------GCACACGCGCATG----TGGACATGTGTGA--CTGCGTCAGT---TGATGAACTCGTGTGTCTGTGTCACTGAGTCTGGGGACGTGTGATTACGCACCTCCCCGAGGGAGTGCATCTCAAGCTGTGTGACCAACCCCCTGGAACCGTGTGTGGGGTGGGTA-TAAC--GTGT--CCAGcagccgg-ggcaacccagtgaaaccccgtgtct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106519483 398 - 171882078 TCAGGTGAGGGAGCCCAT-GTGGCCTTTGGGGCAT----GAGCTCTGTAGGGCCTGTGTTGGGGGCACCTGTGCCTCTAGGAGGGGTGGG---GCGGGGCGGGGC-------------ATGATCCTGGGTGGTAATAGCAGGGGTTGGGGAAGACACTGCCAGCAAACCAGCCA---CAGGCCTGAACAGATCCTGAGCAGGGG-GGC-CTGTGTGTGTACATGT--------------------GCACACGCGCATG----TGGACATGtgtga--ctgcgtcagtgtctgatgaactcgtgtgtctgtgtcactgagtctgGGGACATGTGATTATGCACCTCCCCGAGGGAGTGCATCTCAAGCTGTGTGACCAACCCCCTGGAACCGTGTGTGGGGTGGGTA-TAAC--GTGT--CCAGcagccgg-ggcaacccagtgaaaccccgtgtct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6253440 413 -   6271500 tcaggtgagggagCCCAT-GTGGCCTTTGGGGCAT----GAGCTCTGTAGGGCCTGTGTTGGGGGCGCCTGTGCCTCTAggaggggtggg---gtggggcggggcagggcATGCTCTGATGGTCCTGGGTGGTAATAGCAGGGGTTGGGGAAGACACTGCCAGCAAACCAGCCA---CAGGCCTGAACAGATCCTGAGCAGGGG-GGC-CTGTGTGTGTGCGTGT--------------------GCACACATGCATG----TGGATATGTGTGA--CTGCATCAGTGTCTGATGAACTCGTGTGTCTGTGTCACTGAGTCTGGGGACGTGTGATTACGCACCTCCCCAAGGGAGTGCATCTCAAGCTGTGTGACCAACCCCCTGTAACCGTGTGTGGCGTGGGTA-TAACATGTGT--CCAGcagccgg-ggcaacccagtgaaaccccatctct
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5146158 413 +   5160157 tcaggtgagggagCCCGT-GTGGCCTTTGGGGCAT----GAGCTCTGTAGGGCCTGTGTTGGGGGCGCCTGTGCCTCTAggaggggtggg---gtggggcggggcggggcATGCTCTGATGGTCCTGGGTGGTAATAGCAGGGGTTGGGGAAGACACTGCCAGCAAACCAGCCA---CAGGCCTGAACAGATCCTGAGCAGAGG-GGC-CTGTGTGTGTGCGTGT--------------------TCACACACGCATG----TGGATATGTGTAA--ctgtgtcagtgtctgatgaactcgtgtgtctgtgtcactgagtctgGGGACATGTGATTACGCACCTCCCCGAGGGAGTGCATCTCAAGCTGTGTGACCAACCCCCTGTAACTGTGTGTGGCGTGGGTA-TAACATGTGT--CCAGcagctgg-ggcaacccagtgaaaccccgtctct
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7713747 425 +  58131712 TCAGGTGAGGGAGCCCAT-GTGGCCTTTGGGGCTT----GAGCTCCATAGGGCCTGGGCTGAAGGGGGCTGTGCCTCCAGGAGGGGTG-------GGGGCAGGGC-----GCCCTCTGACAGTCCTGGGTGGTAATAACAGGGGCTGGGG-AGGCACTGCCTGCAAACCAGCCA---CAGACCTGAACAGATCCTGAGCAGGGG-GGC-CtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgcgcgcgcgcATA----TGTACATGTGTGA--CTGCATCAGCGTATGATGAACTTGCGTGTCTGTGTCACTGAGTCTGGGGATATGTGATTATCCACCTCCCCGGGGGAGTGCATCTCAAGCTGTGTGACTGATCCTCTGTAACCGTGTTTGGGGTGGGTATTAAC--ATGTGACCAGcagccagcggcaacccagtgaaaccccatctct
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1104058 402 +   1458659 tcaggtgagggagCCCAT-GTGGCCTTTGGGGCAT----GAGCTCTGTAGGGCCTGTGTTGGGGGCACCTGTGCCTCTAGGAGGGGTGGG---GCGGGGCGGGGC-----ATGCTCCGATGATCCTGGGTGGTAATAGCAGGGGTTGGGGAAGACACTGCCAGCAAACCAGCCA---CAGGCCTGAACAGATCCTGAGCAGGGG-GGC-CTGTGTGTGTACATGT--------------------GCACACGCACATG----TGGACATGTGTGA--CTGC----GTGTCTGATGAACTCGTGTGTCTGTGTCACTGAGTCTGGGGACATGTGATTATGCACCTCCCCGAGGGAGTGCATCTCAAGCTGTGTGACCAACCCCCTGGAACCGTGTGTGGGGTGGGTA-TAAC--GTGT--TCAGcagccgg-ggcaacccagtgaaaccccgtgtct
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       314569 411 +   4111199 TCAGGTGAGGGAGCCCGT-GTGGCCTTTGGGGCAT----GAGCTCTGTAGGGCCTGTGTTGGGGGCGCCTGTGCCTCTAGGAGGGATGGG---G-GTGGCGAGGC-----ATGCTCTGATGGTCCTGGGTGGTGATAGCAGGAGTTGGGGAAGACGCTGCCAGCAAACCAGCCA---CAGGCCTGAACAGATCCTGAGCAGGCG-GGC-Ctgtgtgtgtgtgtgtgtgt----------------gCACACGCGCATG----TGAACGTGTGTGA--CTGCGTCAGTGTCTGATGAAGTCGTGTGTCGGTGTCACTGAGTCTGGGGACATGTGATTATGCACCTCCCCAAGGGAGTGCATCTCAAGCTGTGTGACCAACCCCCTGGAACCGTGTGTGGGGTGGGTA-TAACACGTGT--CCAGcagctgg-ggcaaccgagtgaaaccccgtctct
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114233223 370 - 132174527 tCAGCTGAGGGAGCCCGT-GTGGCCTTGGAGGCGT----GAGCCCTGTAGGGCCTGTGCTGGAGGTGCCTGTGCCTCCAGGAGGGG-------GTGGGGCGGGGC-----GCCCTCTGATGGTCCTGGGTAGTAATAGCAAGGGCTGGGGAGGATGCTGCCTGCAAACCAGCTG---CAGGCCTGAAGAGGGCCTGAGCA--------------------------------------------------------TG----TGTACATGTGCGA--AGGCGTCAGCGT-TGATGAACTCACATGTCTGTGTCCCTGAGTCTGGGGACATGTGATTATGCACCTCTCAGAAAGAGTGCATCTCAGGCTGTGTGACCGA-ACCCTGTAACTGGGTGTGGGGTGGGTATTAAC--ATGTGACCAGCAGCCAGgggcaacccagtgaaaccctacctct
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2888800 333 +   3282555 tcaggtgagggagCCTGT-GTGGC-------------------------------------------CCTGTGCCTCCCGGAGGGGTGGGGGTGGGGGGCGGGAC-----GTCGTCCGATGGTCCTGGGGGGTAATAGCGAGTGCTGGGGAGGATGCTGCCTGCAAACCAGCCG---CAGGCCTGAACAGAGCCTCAGCA--------------------------------------------------------TG----TGTACATGTGTGA--CCGTGTCAGCGTATGATGGACTCACATGTCTATGTCC------CTGGGGACATGTGATTATGCACCTCTCCGAAAGAGTGCATCTCAAGCTGTGCAACCGA-TCCCTGTAACTGGGTGCGGGGTGGGTATTAAC--ATGTGACCAGCAGCCAGgggcaacccagtgaaaccccatctct
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       841247 349 +   1024465 TCAGGTGAGGGAGCCCGT-GTGGCCTTCGGGGCGT----GAGCCCTGCAGGGCCCGTGCTGGAGGTGCCTGTGCCTCCAGGAGGGG-------ATGGAGCGGGGC-----GCCCTCTGATGGTCCTGGGTGGTAATAGCAAGGGCTGGGGAGGATGCTGCCTGCAAACCA---------------------GTCTGAGCA--------------------------------------------------------TG----TGTAC--GTGTGA--CCGTGTCAGCGTATGATGAACTCAC--GTCTGTGTCCCTGAGTCTGGGGACATGTGATTATGCACCTCTCCGAAAGAGTGCATCTCAAGCTGTGTGACCGA-TCCCTGTAACCGGGTGTGGGGTGGGTATTAAC--ATGTGACCAGCAGCCGGgggcaacccagtgaaaccccatctct
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2761079 368 -   3745603 tcaggtgagggagCCCAT-GTGGCCTTCGGGGCAT----GAGCCCTGTAGGGCCTGTGCTGGAGGTGCCCGCGCGTCCAGGAGGGG-------GTGGGGCGGGGC-----GCCCTCTGATGGTCCTGGGTGGTAATAGCAAGGGCTGGGGACGATGCTGCCTGCAAACCAGCCG---CAGGCCTGAACAGAGCCTGAGCA--------------------------------------------------------TG----TGTACAGGTGTGA--CCGTGTCAGCGTATGATGAACTCACATATCTGTGTCCCTGAGTCTGGGGACATGTGATTATGCACCTCTCCGAAAGAGTGCATCTCAAGCTGTGTGACTGA-ACCCTGTAACCGGGTGTGGGGTGGGTAT---A--ATGTGACCAGCAGCCAGgggcaacccagtgaaaccccatctct
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8734383 305 -  36342412 CTAGGACAGGGAACAAACAGCAGCCTTCAGGAGGTCTGAGGGCTCAGTGTGGTCTCCAGTGTAGGAG-CTGTGCCTCTGGGAAGGGTGGG---GT---------------GCCCTCTGATGGTCAGAGATGGTGGTAGCATGGACAGGGAAAGGAGGCTCCAGGTCACCAGCC--------------TGGGCCCTGAGTC--------------------------------------------------------CA----TGCAA--------------GTCAGCATATCATGAAGTTGTATGTCTGTGTCACTAAGTCTGGAGA--TGTGACTGTGTACCCCTCAGAGGGAGCATATTCCGGGCTGT--GACTGTC---------CCATATACGGGAT-GGTGTTAAT--GCAT-----GTAGCC-----------------------TCTCT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30               1739468 279 -  40214260 TCAGGTG-GGGGGCGCG--GCGGTCCTCG-----C----GGGCCC--CAGGCCCTGTGTGCGGAG----TCTGCCTCCCGAAGGGACGGA---GC---------------GCCCTCTGGTGGTGAGCAGTggcccccgcggaggccggg------------------cggcccg---cgggcATGGGC-------GAGCGGGCG-GGTACAGGGTGCG---------------------------ACACCCGTGA-GG----CCTACGTGTGTGGATCCACATCAGTGTGTAGAGAAATTGTGCATCTGAGTCACCGAGTCTGGAGG--TGTGACCGCGTACACCTCTTGGGGAGTG----------TGCACGA------------------GTGAGCAGCGGGTG--------------------------------------------------
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             205778 240 -   1040364 tCAGGTGCAGGGGC-----GC-------------T----GGGC-----AGGGCCTC--CCCGAGGAGCCTGCACCTCTA--AGGAGAAGG---G----------------GCCCTCTGGTGGTGAGGGGTGGCAACAGCAGGGGCTGGCG--GGAGCTCCAGGCAAACCATCCGGGTTGAGCGACAACACGGCCCCAGCAGGGGCAGC-CTCTGGGCGTGTGCCT--------------------GTGTGCACACGTT----GGTACGTGTGTGA--C----------------GAGCACGTGTGTGTCAGCCCACACGTCAGGG----TGCGGT---------------GAGA------------------------------------------------------------------------------------------------------
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  56889445 537 + 124595110 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=525309.000000
s hg38.chr15_KI270850v1_alt    255112 120 +    430880 acacaaaaca--tttaaaaattagccaggcatggtggcacatgactgtggtccccagctacttgggaggctgag----------cccttgagcctaggacgttgaggctgcagggagctgtgatcacaccac
s gorGor5.CYUI01015946v1       353674 119 +    378907 acacaaaaaa--tttaaaaattagccaggcatggtggcacatgactgtggtccc-agctacttgggaggctgag----------cccttgagcctaggaagttgaggctgcagggagctgtgatcacaccac
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62599486 127 + 169600520 acaaaaaaaatgtttttaa-ttagccgggcatggtggctcatgcctgtggtccc-agctacttgggaggctgaggtgggag---cccttgagcctaggaggttgaggctgcagggagctgtgattgcaccac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106519881 127 - 171882078 acaaaaaaaatgtttttaa-ttagccgggcatggtggctcatgcctgtggtccc-agctacttgggaggctgaggtgggag---cccttgagcctaggaggttgaggctgcagggagctgtgattacaccac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6253853 128 -   6271500 acaaaaaaacttttttaaatttagccgggcatggtggctcatgcctgtggtccc-agctacttgggaggctgaggtgggag---cccttgaacctaggaggttgaggctgcagggagctgtgattgcaccac
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5146571 128 +   5160157 acaaaaaaacttttttaaaattagccgggcatggtggctcatgcctgtggtccc-agctacttgggaggctgaggtgggag---cccttgaacctaggaggttgaggctgcagggagctgtgattgcaccac
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7714172 128 +  58131712 acacaaaaaa--tttaaaa-ttagctgggcatggaagcatgtgcctgtggtcac-agctacttggaaggctgaggtgggaggatcccttgagcctgggaggttgaggctgcagagagccgtgattgcaccac
i chlSab2.chr26             C 0 I 3899
s manLeu1.NW_012105520v1      1104460 127 +   1458659 acaaaaaaaatttttttaa-ttagccgggcatggtggctcatgcctgtggtccc-agctacttgggaggctgaggtgggag---cccttgagcctaggaggttgagcctgtagggagctgtgattgcaccac
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       314980 127 +   4111199 acaaaaaaaaatttttaaa-tgagctgggcatggtggctcatgcctgtggtccc-agctacttgggaggctgaggtgggag---cccttgagcctaggaggttgaggctgcagggagctgtgattgcaccac
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114233593 115 - 132174527 acagaaaaa---tttaaaaatcagccaggcatggtagcacctgcctgtggtccc-a------------gctgaggtgggaggatccagtgagcctggga-gttgaggctgcaaggagccatgatcacaccac
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2889133 116 +   3282555 acagaaaaa---tttaaaattcaaccgggcatggtggctcgtgcctgtggcccc-a------------gctgaggtgggaggatcccgtgagcctgggaggttgaggctgcaaggagccatgatcgcaccac
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       841596 116 +   1024465 acagaaaaa---tttaaaattcaacagggcatggtggctcgtgcctgtggtccc-a------------gctgaggtgggaggatcccgtgagcctgggaggctggggctgcaaggagccatgaccgcaccac
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2761447 116 -   3745603 acagaaaaa---tttaaaaatcagccgggcatggtggcacatgcctgttgtccc-a------------gctgaggtgggaggatcccgtgagcctgggaggttgaggctgcaaagagccatgatcacaccac
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr30               1739747  21 -  40214260 ---------------------------------------------------------------GGGAGGCCCAG----------CC-------------------GGCTGCAT-------------------
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             206018  52 -   1040364 --------------------------------------------------------------TGGTCGGTGGGATTGTGTG---TCTCAGAGGCTGTGGCCTCGTGGCTGT-----GCTGTG----------
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  56889445 537 + 124595110 I
e otoGar3.GL873530            8734688   0 -  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=258904.000000
s hg38.chr15_KI270850v1_alt    255232 59 +    430880 agcactccagcctgggtgacagagtgagaccctgtctcaaaaaaacaaaaaaTGTGACC
s gorGor5.CYUI01015946v1       353793 59 +    378907 agcactccagcctgggtgacagagtgagaccctgtctcaaaaaaacaaaaaaTGTGACC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62599613 58 + 169600520 tgcactccagtctcggtgacagagtgagaccctgtctt-aaaaaacaaaaaaTGTGAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106520008 58 - 171882078 tgcactccagtctcggtgacagagtgagaccctgtctt-aaaaaacaaaaaaTGTGAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6253981 58 -   6271500 tgcactccagcctcggtgacagagtgagaccctgtctt-aaaaaacaaaaaaTGTGAAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5146699 51 +   5160157 tgcactccagcctgggtgacagggtgagaccctgtctt--------aaaaaaTGTGAAC
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1104587 58 +   1458659 tgcactccagcctcggtgacagagtgagaccctgtctt-aaaaaacaaaaaaTGTGAAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       315107 58 +   4111199 tgcactccagcctgggtgacagagtgagaccctgtctt-aaaaaacagaaaaTGTGAAC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114233708 58 - 132174527 tgcactccagcctggctgacagagtgagaccctgtctc-aaacaacaaaaaaTGTGACC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2889249 56 +   3282555 tgcactcccgcctggctgac--agtgagaccctgtctc-aaacagcaaaaaaCGTGACG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       841712 56 +   1024465 tgcactccagcctggctgac--agtgagaccctgcctc-aaacaacaaaaaaTGTGACC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2761563 58 -   3745603 tgcactccagcctggctgacagagtgagaccctgtctc-aaacaacaaaaaaTGTGACC
i aotNan1.NW_018511953v1    C 0 C 0
s canFam3.chr30               1739768 20 -  40214260 ---------GTCTGGGTGTCTGAGTGAGC------------------------------
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             206070 22 -   1040364 --------GGCCTGGGTGTCTG--------CCCGTCTC---------------------
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  56889445 537 + 124595110 I
e otoGar3.GL873530            8734688  0 -  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7714300 3899 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=182105.000000
s hg38.chr15_KI270850v1_alt    255291 35 +    430880 AGCTGCATGTCTGGCTGCTGTGTGTGTGAACCCA----C
s gorGor5.CYUI01015946v1       353852 35 +    378907 AGCTGCATGTCTGGCTGCTGTGTGTGTGAACCCA----C
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62599671 37 + 169600520 AGCTGCATGTCTGGCTGCTGTGTGTGTAAACCCA--CGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106520066 37 - 171882078 AGCTGCATGTCTGGCTGCTGTGTGTGTAAACCCA--CGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6254039 39 -   6271500 AGCTGCATGTCTGGCTGCTGTGTGTGTAAACCCAtgtgt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5146750 35 +   5160157 AGCTGCATGTCTGGCTGCTGTGTGTGTGAACCCA----C
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1104645 36 +   1458659 AGCTGCATGTCTGGCTGCTGTGTGTGTGAA-CCA--CGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       315165 34 +   4111199 AGCTGCATATCTGGCTGCTGTGTGTGTGAACCCA-----
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114233766 35 - 132174527 AGCTACATGTCTGGCTGCTGTGTGTGTGAACTCA----C
i calJac3.chr10             C 0 M 1939
s saiBol1.JH378276            2889305 35 +   3282555 AGCGGCATGTCTGGCTGCTGTGTGTGTGAACTCG----C
i saiBol1.JH378276          C 0 I 2
s cebCap1.NW_016107979v1       841768 35 +   1024465 AGCTGCATGTCTGGCTGCTGTGTGTGTGAGCTCA----C
i cebCap1.NW_016107979v1    C 0 I 2
s aotNan1.NW_018511953v1      2761621 35 -   3745603 AGCTGCATGTCTGGCTGCTGTGTGTGTGAACTTA----C
i aotNan1.NW_018511953v1    C 0 I 2
s otoGar3.GL873530            8734688 35 -  36342412 GGCTGCATGTCTGAGTGGGGCATGTGTGAATCCA----C
i otoGar3.GL873530          C 0 I 2
s canFam3.chr30               1739788 19 -  40214260 ---------------AGGGGTGTCCGGGGCCCTC-----
i canFam3.chr30             C 0 C 0
e mm10.chr9                  56889445 537 + 124595110 I
e dasNov3.JH572216             206092  0 -   1040364 C
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7714300 3899 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=184242.000000
s hg38.chr15_KI270850v1_alt    255326 53 +    430880 ATGTGTGTGTGTCACTAAATGAGCAGTGGTATCTGGGGAAATAAGTGGAGCAA
s gorGor5.CYUI01015946v1       353887 53 +    378907 ATGTGTGTGTGTCACTAAATGAGCAGTGGTATCTGGGGAAATAAGTGGAGCAA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62599708 43 + 169600520 GTGTGTTTGTGTGACTAAATGAGCAGTGGTATCTGG----------TGAGCAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106520103 43 - 171882078 GTGTGTGTGTGTGACTAAATGAGCAGTGGTATCTGG----------TGAGCAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6254078 43 -   6271500 gtgtgtgtgtgtgACTAAATGAGCAGTGGTATCTGG----------TGAGCAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5146785 43 +   5160157 GTGTGTTTGTGTGACTAAATGAGCAGTGGTATCTGG----------TGAGCAA
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1104681 43 +   1458659 GTGTGTTTGTGTGACTAAATGAGCAGTGGTATCTGG----------TGAGCAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       315199 42 +   4111199 -CGTGTGTGTGTGACTAAATGAGCAGTGGTATCTGG----------TCAGCAA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2889342 53 +   3282555 GTGTGTTTGGGTGTCTAAATGAGCAACGGTATCTGGGGGAAGCAGGGGGGCAA
i saiBol1.JH378276          I 2 C 0
s cebCap1.NW_016107979v1       841805 53 +   1024465 GTGTGTTTGTGTGTCTAAATGAGCAATGGTATCTGGGAGAATGAGGGGGGCAA
i cebCap1.NW_016107979v1    I 2 C 0
s aotNan1.NW_018511953v1      2761658 53 -   3745603 GTGTGTTTGTGTGTCTAAATGAGCAGTGGTATCTGGGGGAATCAGGGGGGCAA
i aotNan1.NW_018511953v1    I 2 C 0
s otoGar3.GL873530            8734725 49 -  36342412 GTGTGTTTGTGTGTCTAAGTGAGCAGTAGTGCCTTGGGGGAG----TGAGGAG
i otoGar3.GL873530          I 2 C 0
s canFam3.chr30               1739807 23 -  40214260 ------------------CTGGGCGGGGGG--CTGG----------GGGGCAC
i canFam3.chr30             C 0 I 2
s dasNov3.JH572216             206092 19 -   1040364 -----------------AGTGAGCAGTGGCGTCCGA-----------------
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  56889445 537 + 124595110 I
e calJac3.chr10             114233801 1939 - 132174527 M
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7714300 3899 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=2781298.000000
s hg38.chr15_KI270850v1_alt    255379 393 +    430880 GA--------TCAAGGCTGTTCTGGCTGCTTAGGGCCACAGT-GGGCCCCTCTGAGACCC--------CTCTGCATTC--CCTTGTGAGTCCTCATGA-CCTCTGT-TAACCAGGTAGCCCAGGAGGCAGTGCCGCCAGCAGACATCGTTTTCTCAGTGAAGAGCCCACCGAGTGCCGGCTACCTGGTGATGGTGCTGCGTGGCATCTTGGCAGATGAGCCACCCAGCCTGGACCCCGTGCAGAGCTTCTCCCAAGAGGCAGTGGACACAGGCAGGATCCTCTACCTGCACTCCCGCCCTGAGGC--------ATGCCTTCTCGCTGGATGTGGCCTCG-GCCTGGGTGCTCCCCTTGAGGACGTCA-CGTGGAGCTGGAGGTGCTGCCTGCTGTCATCCCCACTGGGGGCACAAAACTTCAGC
s gorGor5.CYUI01015946v1       353940 401 +    378907 GA--------TCAAGGCTGTTCCGGCTGCTTAGGGCCACAGT-GGGCCCCTCTGAGACTC--------CTCTGCATTC--CCTTGTGAGTCCTCATGA-CCTCTGT-TAACCAGGTAGCCCAGGAGGCAGTGCCGCCAGCAGACATCGTTTTCTCAGTGAAGAGCCCACCGAGTGCCGGCTACCTGGTGATGGTGCTGCGTGGCATCTTGGCAGATGAGCCACCCAGCCTGGACCCCATGCAGAGCTTCTCCCCAGAGGCAGTGGACACAGGCAGGATCCTCTACCTGTACTCCCGCCCTGAGGCCTGGAGCCATGCCTTCTCGCTGGATGTGGCCTCA-GCCTGGGTGCTCCCCTTGAGGACGTCA-CGTGAAGCTGGAGGTGCTGCCTGCTGTCATCCCCACTGGGGGCACAAAACTTCAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62599751 401 + 169600520 GA--------TCAAGCCTGTTCTGGCTGCCTAGGGGCACAGT-GGGCCCCTCTGAGACCC--------ATCTGTGTTC--CCTTGTTGGTCCTCATGA-CCTCTGT-TAACCaggcagcccaggaggcagcccagaaggcagACATCGTTTTCTCAGTGAAGAGCCCACTGAGTGCCAGCTACCTGGTGATGGTTTCGCCTGGCGCCTTGGCAGGTGAGCCACCCAGCCTGGACCCCATGCAGAGCTTCTCTCAAGAGGCGGTGGACGCAGGCAGGATCCTGTACCTGCACTTCTGCCCTGAGGCCTGGAGCGATGCCTTCTTGCTGGTTGTGGCCTCA-GCCTGGGTGCTCCCCTTGAGGACGTAT-CGTAGAGCTGGAGGTGCTGCCCACTGTCATCCCCACCGGGAGTGCAAAACTTCAGC
i rheMac8.chr7              C 0 I 10
s macFas5.chr7              106520146 401 - 171882078 GA--------TCAAGCCTGTTCTGGCTGCCTAGGGGCACAGT-GGGCCCCTCTGAGACCC--------ATCTGTGTTC--CCTTGTTGGTCCTCATGA-CCTCTGT-TAACCaggcagcccaggaggcagcccagaaggcagACATCGTTTTCTCAGTGAAGAGCCCACTGAGTGCCAGCTACCTGGTGATGGTTTCGCCTGGCGCCTTGGCAGGTGAGCCACCCAGCCTGGACCCCATGCAGAGCTTCTCTCAAGAGGCGGTGGACGCAGGCAGGATCCTGTACCTGCACTTCTGCCCTGAGGCCTGGAGCGATGCCTTCTTGCTGGTTGTGGCCTCA-GCCTGGGTGCTCCCCTTGAGGACGTAT-CGTAGAGCTGGAGGTGCTGCCCACTGTCATCCCCACCGGGAGTGCAAAACTTCAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6254121 401 -   6271500 GA--------TCAAGCCTGTTCTGGCTGCCTAGGGGCACAGT-GGGCCCCTCTGAGACCC--------ATCTGTGTTC--CCTTGTTAGTCCTCATGA-CCTCTGT-TAACCaggcagcccaggaggcagcccagaaggcagACATCGTTTTCTCAGTGAAGAGCCCACTGAGTGCCAGCTACCTGGTGATGGTTTCGCCTGGCGCCTTGGCAGATGAGCCACCCAGCCTGGACCCCATGCAGAGCTTCTCCCAAGAGGCGGTGGACGCAGGCAGGATCCTGTACCTGCACTTCTGCCCTGAGGCCTGGAGCGATGCCTTCTTGCTGGTTGTGGCCTCA-GCCTGGGTGCTCCCCTTGAGGACGTAT-CGTAGAGCTGGAGGTGCTGCCCACTGTCATCCCCACCGGGAGTGCAAAACTTCAGC
i macNem1.NW_012011056v1    C 0 I 10
s cerAty1.NW_012001384v1      5146828 401 +   5160157 GA--------TCAAGCCTGTTCTGGCTGCCTAGGGCCACAGT-GGGCCCCTCTGAGACCC--------ATCTGTGTTC--CCTTGTTGGTCCTCATGA-CCTCTGT-TAACCaggcagcccaggaggcagcccagaaggcagACATCGTTTTCTCAGTGAAGAGCCCACTGAGTGCCAGCTACCTGGTGATGGTTTCACCTGGCGCCTTGGCAGATGAGCCACCCAGCCTGGACCCCATGCAGTGCTTCTCCCAAGAGGCGGTGGACGCAGGCAGGATCCTGTACCTGCACTCCTGCCCTGAGGCCTGGAGCGATGCCTTCTTGCTGGTTGTGGCCTCA-GCCTGGGTGCTCCCCTCGAGGATGTAT-CGTAGAGCTGGAGGTGCTGCCCACTGTCATCCCCACCGGGAGTGCAAAACTTCAGC
i cerAty1.NW_012001384v1    C 0 I 10
s manLeu1.NW_012105520v1      1104724 398 +   1458659 GA--------TCAAGCCTGTTCTGGCTGCCTAGGGGCACAGT-GGGCCCCTCTGAGACCC--------ATCTGTGTTC--CCTTGTTAGTCCTCATGA-CCTCTGT-TAACCaggcagcccaggaggcagcccagaaggcagACATCGTTTTCTCAGTGAAGAG-CCACTGAGTGCCAACTACCTGGTGATGGTTTCGCGTGGTGTCTTGGCAGGTGAGCCACCCAGCCTGGACCCCATGCAGAGCTTCTCTCAAGAGGCAGTGGACACAGACAGGATCCTGTACCTGCACTCCTGCTC--AGGCCTGGAGCGATGCCTTCTTGCTGGATGTGGCCTCA-GCCTGGGTGCTCCCCTTGAGGACGTAT-CGTAGAACTGGAGGTGCTGCCCACTGTCATCCCTACCGGGAGTGCAAAACTTCAGC
i manLeu1.NW_012105520v1    C 0 I 10
s colAng1.NW_012116021v1       315241 401 +   4111199 GA--------TCGAGCCTGTTCTGGCTGCCTAGGGCCACAGT-GGGCCCCTCTGAGACCC--------ATCTGTGTTC--CCTTGTTAGTCCTCATGA-CCTCTGT-TAACCAGGCAGCCCAGGCGGCAGCCCAGAAGGCAGACATCGTTTTCTCAGTGAAGAGCCCACTGAGTGCCAGCTCAGTGGTGATGGTTTCGCCTGGCGCCTTGGCAGATGAGCCACCCAGCCTGGACCCCATGCAGAGCTTCTCTCAATAGGCGGTGGACGCAGGCAGGATCCTGTACCTGCACTCCTGCCCTGAGGCCTGGAGCGATGCCTTCTCGCTGGTTGTGGCCTCA-GCCTGGGCGCTCCCCTTGATGACGTAT-CGTAGAGCTGGAGGTGTTGCCCACTGTCATCCCCACCGGGAGTGCAAAACTTCAGC
i colAng1.NW_012116021v1    C 0 I 10
s saiBol1.JH378276            2889395 403 +   3282555 GA--------TCAAGCCTGTTTTGGCTGCTTAGGGCCACAGT-GGCCCGCTCTGTGACCC-------TCTCTGGGGCC--CCCTGTGAGTCCTCATGA-CCTCTGT-CAACCAGGCAGCCCAGGAGGCAGTGCCGCCCGCAGACATCACATTCTCAGTGAAGAGCCCACCGAGTGCCGGCTACCTGGTGATGGTGTCGCACGGCGCCTTGGCAGATGAGCCACCCAGCCTGGACCCCGTGCAGAGCTTCTCCCAGGAGGCGGTGGACGCGGGCAGGGTCCTGTACCTGCACTCCCGCCCTGAGGCCTGGAGCGACGCCTTCTCGCTGGACGTGGCCTCGGGCCTGGGCGCCCCCCTTGAGGGTGTCCGTGTGGAGCTGCAGGTGCTGCCCGCTGCCATCCC-ACTGGAGGCGCAAAACTTCAGC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       841858 403 +   1024465 GA--------TCAAGCCTGTTTTGGCTGCTTAGGGCCACAGT-GGCCCCCTCTGTGACTC-------TCTCTGTGGCC--CCCTGTGAGTCCTCATGA-CCTCTAT-TAACCAGGCAGCCCAGGAGGCAGTGCCGCCAGCAGACATCACATTCTCAGTGAAGAGCCCACCGAGTGCCGGCTACCTGGTGATGGTGTCGCATGGTGCCTTGGCAGATGAGCCACCCAGCCTGGACCCTGTGCAGAGCTTCTCCCAGGAGGCGGTGGATGCGGGCAGGGTCCTGTACCTGCACTCCCGCCCTGAGGCCTGGAGCGATGCCTTCTCGCTGGATGTGGACTCAGGCCTGGGTGCTCCCCTTGAGGGTGTCCGTGTGGAGCTGGAGGTGCTGCCTGCTGCCATCCC-ACTGGAGGTGCAAAACTTCAGC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2761711 403 -   3745603 GA--------TCAAGCCTGTTTTGGCTGCTTAGGGCCACAGT-GGCCCCCTCTGTGACCC-------CCTCTGTAGCC--CCCTGTGAGTCCTCATGA-CCTCTGT-TAACCAGGCAGCCCAGGAGGCAGTGCCGCCCGCAGACATCACATTCTCAGTGAAGAGCCCACCGAGTGCCGGCTACCTGGTGATGGTGTCGCATGGAGCCTTGGCAGATGAGCCACCCAGCCTGGATCCCGTGCAAAACTTCTCCCAGGAGGCGGTGGACGCGGGCAGGGTCCTGTACCTGCACTCCCGCCCTGAGGCCTGGAGCGACGCCTTCTCGCTGGATGTGGCCTCGGGCCTGGGTGCTCCCCTTGAGGGCGTCCGCGTGGAGCTGGAGGTGCTGCCTGCTGCCATCCC-ACTGGAGGCGCAAAACTTCAGC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8734774 423 -  36342412 GATATGGAGCTTGAGCCCGTTCTGACTGCTCAGGGCCACAGCAGGTCCTCTCTGTGATCCCCGTGACTACCTGTGACCTTCCCACTGAATGTCGATGACCCTCTGTCTGACCAGGCAGCCCAGGAGGCAGTGTCACCAGCAGACATCATGTTCTTAGTGAAGAGCCCACCAAGCGCCGGCTACCTGGTGATGGTGTCCCACAGCACCTCGGCAGATAAGCCACCCAGCCTGGACCCCGTGCAGAGCTTCTCCCAGGAGGCGGTGGATTCCGGCAGGATCCTATACCTGCACTCCCACCCTGAAGCCTGGAGTGATGCCTTCTCACTGGATGTGGCCTCAGGCCTGGGTGCTCCCCTTGAGGGCATCCAAGTGGAACTGCAGGTGCTGCCTGCTGCCATCCC-ACTGGAGGCACAGAACTTCAGC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56889982 384 + 124595110 GA--------CCGAGCCTGTTCTGCCACCTGAGGTCCACAAC-AG-----CCTGTGACCC--------------------C---GTTTGTCCCCATCG-TCTCTGT-TGACTAGGTGGTCCAGGAGGCAGTGCTGCCTGCCGACATCATGTTCTCGTTGAGAAGCCCCCCGAACGCCGGCTACCTGGTGATGGTGTCCCACGGCGCTTCAGCAGAGGAGCCGCCCAGCCTGGACCCTGTGCAGAGCTTCTCCCAGGAGGCAGTGAATTCAGGCCGGGTTCTCTACCTGCACTCTCGCCCTGGAGCCTGGAGTGATTCCTTCTCCCTGGATGTGGCCTCGGGCCTGGGTGATCCTCTTGAAGGCATCTCTGTGGAGCTGGAGGTGCTGCCCACAGTCATCCC-CCTGGATGTTCAAAACTTCAGC
i mm10.chr9                 I 537 C 0
s canFam3.chr30               1739832 372 -  40214260 --------CGCTGAGCCTGCTCTGGCCGCTTGGGGGC-CGGC-GG-------------CC----------------TC--CCT---------CCATGACCCTGTGT-CACGCAGGCAGCGCAGGAGGCAGTGCCGCCCGCCCAAATTGTGTTCTCGGTGAAGACCCCGCCGCGGGCCGGCTACCTGGTGATGCTGTCCCGCGGCGCCTCCGTGGCCGGGCCGCCCAGCTGGGACCCCGTGCAGAGCTTCTCCCAGGAGGCGGTGGACGCCGGCAGGGTCCTGTACCTCCACTCCCGCCCCGAGGCCTGGAGTGACTCCTTCTCCCTAGACGTGGGCTCAGGCCTGGGTGCGCCCCTCGAGGGCGTCCGCGTGGAGCTGGAGGTGCTGCCCGCCACCATCCC-ACTGGAGGCACAGAACTTCAGC
i canFam3.chr30             I 2 C 0
s dasNov3.JH572216             206111 390 -   1040364 ------TGCCCTGGGCCCTTCCTGG--GCGTGGGGGGCGAGG-AGAC--------AGCCC------------GTTCCG--CCCCGTGAGTCTCGGCAC-CCTCTGT-CAACCAGGCAGCCCAGGAAGCAGTGCCACCCGCAGACATCGTGTTCTCAGTGAAGTCCCCACCCAGCGCCGGCTACCTGGTGACCGTGTCCCCCGGCGCCGCAGCGGACGAGCCGCCCCGCCTGGACCCCGTGCAGAGCTTCTCCCAGGAGGCGGTGGACGCGGGCAGGGTCCTGTACCTGCACTCCCGCCCCGAGGCCCAGAGCGACACCTTCTCCCTGGACGTGGCCTCGGGCCTGGGCGCCCCCCTCGAGGGCATCCGGGTGGAGCTGGAGGTGCTGCCCGCCGCCGTCCC-GCTGGAGGCTCAGAACTTCAGT
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             114233801 1939 - 132174527 M
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7714300 3899 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=17513.000000
s hg38.chr15_KI270850v1_alt    255772 15 +    430880 AGTAGAGGGGGCACA
s gorGor5.CYUI01015946v1       354341 15 +    378907 AGTAGAGGGGGCACA
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106520547 10 - 171882078 -GTCCCCGAGG----
i macFas5.chr7              C 0 C 0
s saiBol1.JH378276            2889798 13 +   3282555 -GTCCCCGAGG-GCG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       842261 13 +   1024465 -GTCCCTGAGG-GCG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2762114 13 -   3745603 -GTCCCCGAGG-GCG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8735197 13 -  36342412 -ATCCCTGAAG-GTG
i otoGar3.GL873530          C 0 I 4
s mm10.chr9                  56890366 13 + 124595110 -GTTCCCGAGG-GCG
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1740204 13 -  40214260 -GTCCCCGAGG-GCG
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             206501 13 -   1040364 -GTCGCCGAGG-GCG
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             114233801 1939 - 132174527 M
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       315642 10 +   4111199 I
e manLeu1.NW_012105520v1      1105122 10 +   1458659 I
e chlSab2.chr26               7714300 3899 +  58131712 I
e cerAty1.NW_012001384v1      5147229 10 +   5160157 I
e macNem1.NW_012011056v1      6254522 10 -   6271500 I
e rheMac8.chr7               62600152 10 + 169600520 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=1250332.000000
s hg38.chr15_KI270850v1_alt    255787 170 +    430880 GTCGCAGCTGCACCCTGGCCCCTCCACTGCTCCGCGTTGCCAGGTCCTGCTTCCCCACTCTCCCGGGCCTTGGCCTGCAGGTGCTGGAGCCACCCCGGCATGGGGCCCTGCAGAAGGAGGATGGGCCTCAAGCCAGGACCCTCAGCACCTTCTGCTGGAGAGAGGTACGG
s gorGor5.CYUI01015946v1       354356 170 +    378907 GTGGCAGCTGCACCCTGGCCCCTCCACTGCTCCGCGTTGCCAGGTCCTATTTCCCCACTCTCCCGGGCCTTGGCCTGCAGGTGCTGGAGCCACCCCGGCATGGGGCCCTGCAGAAGGAGGATGGGCCTCAAGCCAGGACCCTCAGCACCTTCTGCTGGAGAGAGGTACGG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62600162 170 + 169600520 GTGGCAGCCACACCTTGGTCCCTCCACTGCTCTGCGTCACCGGGCCCTACTTCCCCACTCTCCCGGGCCTTGGCCTGCAGGTTCTGGAGCCATCCTGGCATGGGGCCCTGCAGAAGGAAGATGGGCCTCATGCCAAGACCCTCAGCGCCTTCTGCTGGAGAGAGGTATGG
i rheMac8.chr7              I 10 C 0
s macFas5.chr7              106520557 170 - 171882078 GTGGCAGCCACACCTTGGTCCCTCCACTGCTCTGTGTCACCGGGCCCTACTTCCCCACTCTCCCGGGCCTTGGCCTGCAGGTTCTGGAGCCATCCTGGCATGGGGCCCTGCAGAAGGAAGATGGGCCTCATGCCAAGACCCTCAGCGCCTTCTGCTGGAGAGAGGTATGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6254532 170 -   6271500 GTGGCAGCCACACCTTGGTCCCTCCACTGCTCTGCGTCACCGGGCCCTACTTCCCCACTCTCCCGGGCCTTGGCCTGCAGGTTCTGGAGCCATCCTGGCACGGAGCCCTGCAGAAGGAAGATGGGCCTCATGCCAAGACCCTCAGCGCCTTCTGCTGGAGAGAGGTATGG
i macNem1.NW_012011056v1    I 10 C 0
s cerAty1.NW_012001384v1      5147239 170 +   5160157 GTGGCAGCCACACCTTGGTCCCTCCACTGCTCTGCGTCACCGGGCCCTACTTCCCCAGTCTCCCGGGCCTTGGCCTGCAGGTTCTGGAGCCATCCTGGCATGGAGCCCTGCAGAAGGAAGATGGGCCTCATGCCAAGACCCTCAGCGCCTTCTGCTGGAGAGAGGTATGG
i cerAty1.NW_012001384v1    I 10 C 0
s manLeu1.NW_012105520v1      1105132 170 +   1458659 GTGGCAGCCACACCTTGGTCCCTCCACTGCGCTGCGTCACCGGGCCCTACTTCCCCACTCTCCCGGGCCTTGGCCTGCAGGTTCTGGAGCCATCCTGGCATGGGGCCCTGCAGAAGGAAGATGGGCCTCATGCCAAGACCCTCAGCGCCTTCTGCTGGAGAGAGGTATGG
i manLeu1.NW_012105520v1    I 10 C 0
s colAng1.NW_012116021v1       315652 170 +   4111199 GTGGCAGCCACACCTTGGTCCCTCCACTGCTCCGCATCACTGGGCCCTACTTCTCCACTCTCCCAGGCCTTGGCCTGTAGGTTCTGGAGCCATCCTGGCATGGGGCCCTGCAGAAGGAAGATGGGCCTCATGCCAAGACCCTCAGCGCCTTCTGCTGGAGAGAGGTATGG
i colAng1.NW_012116021v1    I 10 C 0
s saiBol1.JH378276            2889811 167 +   3282555 ---GCAGCCGCACGCTGACCCCTGCGCTGCTCCGCGTCACCGGGCCCTACTTCCCCACTCTGCCTGGTCTTAGCCTGCAGGTGCTGGAGCCGCCCCAGCACGGGGCCCTGCAGAAGGAGGACGGACCTCAAGCCGGGACCCTCCGCGCCTTCTCCTGGAGAGAGGTACGG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       842274 167 +   1024465 ---GCAGCCGCACGCTGGCCCCTCCGCTGCTCCGCGTCGCCGGGCCCTACTTCCCCACTCTGCCTGGCATTAGCCTGCAGGTGCTGGAGCCGCCCCGGCACGGGGCCCTGAAGAAGGAGGACGGGTCTCAAGCCAGGACCCTCAGCGCCTTCTCCTGGAGAGAGGTACGG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2762127 167 -   3745603 ---GCAGCCGCACGCTGGCCCCTCCGCTGCTCCGCGTCGCCGGGCCCTACTTCCCAACTCTGCCTGGCCTTAGCCTGCAGGTGCTGGCGCCGCCCCGGCACGGGGTCCTGCAGAAGGAGGACGGACCTCAAGCCGGGACCCTCAGCGCCTTCTCCTGGAGAGAGGTACGG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8735214 163 -  36342412 -------TTACACCCTGGCCCCTCCACTAATCCGTGTCACTGGGCCTTACTTCCCCACACTGCCAGGCCTCAACCTGCAGGTACTGGAGCCACCCCAGCATGGGGCCCTGCAGCGAGAGGAAGGACCTCAAGATGGGACCCTCAGCACCTTCTCCTGGAGAGAGGTACGG
i otoGar3.GL873530          I 4 C 0
s mm10.chr9                  56890379 167 + 124595110 ---GCACCCGGACGCTGGCCCCTCCTCTGGTCCAGATCACTGGGCCTTACTTCCCCACGCTGCCAGGCCTTGTCCTGCAGGTGCTAGAGCCACCGCAGCACGGGGCCCTGCAGAAGGAGGATCATTCTCAAGATGGGAGCCTCAGCACCTTCTCCTGGAGAGAGGTACCG
i mm10.chr9                 C 0 I 223
s canFam3.chr30               1740217 167 -  40214260 ---GCAGCCGCGTGCTGGCCCCCCCGCTGCTCCAGGTCGCCGGGCCCTACTTCCCTGCACTGCCCGGCCTCGAACTGCGGGTCCTCGAGCAGCCCCTGCACGGGGCCCTGCGGAGAGAGGAGGCCCCTCAAGCGGGGACCCTCAGCGCTTTCTCCTGGAAAGAGGTACTG
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             206514 167 -   1040364 ---GCGTCCGCACCCTGGCCCCTCCGCTGCTCCGCGTCGCCGGCCCCTACTTCCCCACGCTGGCAGGCCTCCGCCTGCAGGTGCTGCAGCCGCCCCGGCACGGCACCCTGCGCAGAGAGGAAGGACCTCAAGACGGGAGCCTGGAGGGCTTCTCCTGGAGAGAGGTAGGG
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             114233801 1939 - 132174527 M
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7714300 3899 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=220298.000000
s hg38.chr15_KI270850v1_alt    255957 61 +    430880 CTGTGAGAGAGGCCCAGGGGCTGCAGCCCAGCTCTGGGGGCAGAGTGGAGGGAGCCCCGG-G
s gorGor5.CYUI01015946v1       354526 61 +    378907 CTGTGAGAGAGGCCCAGGGGCTGCAGCCCAGCTCTGGGGGCAGAGTGGAGGGAGCCCCGG-G
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62600332 61 + 169600520 CTGTGAGAGAGGCCCAGGGGCTGCAGCCCAGCTCTGGGGGCAGAGTGGAGGGAGCTCCAG-G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106520727 61 - 171882078 CTGTGAGAGAGGCCCAGGGGCTGCAGCCCAGCTCTGGGGGCAGAGTGGAGGGAGCTCCAG-G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6254702 59 -   6271500 CTGT--GAGAGGCCCAGGGGCTGCAGCCCAGCTCTGGGGGTAGAGTGGAGGGAGCTCCAG-G
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5147409 59 +   5160157 CTGT--GAGAGGCCCAGAGGCTGCAGCCCAGCTCTGGGGGCAGAGTGGAGGGAGCTCCAG-G
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1105302 61 +   1458659 CTGTGAGAGAGGCCCAGGGGCTGCAGCCCAGCTCTGGGGGCAGAGTGGAGGGAGCTCCAG-G
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       315822 61 +   4111199 CTGTGAGAGAGGCCCAGGGGCTGCAGCCCAGCTCTGGGGGCAGAGTGGAGGGAGCTCCAG-G
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2889978 55 +   3282555 CTGT--GACAGGCCCAG-GGCTGCAG-CCAGCTCCGGGCGC-CGGTGACGGGAGCCCCGG--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       842441 55 +   1024465 CTGT--GAGAGGCCCAG-GGCTGCAG-CCAGCTCTGGGCG--CAGTGAAGGGAGCCCCGGG-
i cebCap1.NW_016107979v1    C 0 I 127
s aotNan1.NW_018511953v1      2762294 57 -   3745603 CTGTGAGAGAGGCCCAG-GGCTGCAG-CCAGCTCCGGGCAC-AAGTGAAGGGCGCCCCGG--
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8735377 42 -  36342412 CTGTCAGGGAGGCC-------------------TTGGGGGAAGAGTGGGGGAAGCCATGG-G
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30               1740384 36 -  40214260 -----------CTCTCGGGACT---------CGCTGGGGGCCG---GGGGGCAGCTGGG---
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             206681 58 -   1040364 CCAGCAGGGAGGCCCCGGGGGTGCGGCCCAG--CCGGGGCCAGGGTAG-GGGAGCCCCAA-G
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  56890546 223 + 124595110 I
e calJac3.chr10             114233801 1939 - 132174527 M
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7714300 3899 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=68791.000000
s hg38.chr15_KI270850v1_alt    256018 21 +    430880 GACTCCCAGTCCAGGGG-TTAT--
s gorGor5.CYUI01015946v1       354587 21 +    378907 GACTCCCAGTCCAGGGG-TTAT--
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62600393 22 + 169600520 GACTCCCAGTCCGGGGGGTTAT--
i rheMac8.chr7              C 0 I 2
s macFas5.chr7              106520788 22 - 171882078 GACTCCCAGTCCAGGGGGTTAT--
i macFas5.chr7              C 0 I 2
s macNem1.NW_012011056v1      6254761 22 -   6271500 GACTCTCAGTCCGGGGGGTTAT--
i macNem1.NW_012011056v1    C 0 I 2
s cerAty1.NW_012001384v1      5147468 22 +   5160157 GACTCCCAGTCCGGGGGGTTAT--
i cerAty1.NW_012001384v1    C 0 I 2
s manLeu1.NW_012105520v1      1105363 22 +   1458659 GACTCCCAGTCCAGGGGGTTAT--
i manLeu1.NW_012105520v1    C 0 I 2
s colAng1.NW_012116021v1       315883 22 +   4111199 GACTCCCAGTCCAGGGGATTAT--
i colAng1.NW_012116021v1    C 0 I 2
s saiBol1.JH378276            2890033 20 +   3282555 GACCCCCA--TCTGGGGTTTGC--
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1      2762351 20 -   3745603 GACTCCCA--TCCGGGGTTTAC--
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8735419 22 -  36342412 GCCTCCGAACCCTGGGGTATGC--
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30               1740420 22 -  40214260 GGCTCTACGGCTGGGGGCGTCC--
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             206739 21 -   1040364 GACTCCCAGTCTGGGG---TACAT
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  56890546 223 + 124595110 I
e calJac3.chr10             114233801 1939 - 132174527 M
e cebCap1.NW_016107979v1       842496 127 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7714300 3899 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=154989.000000
s hg38.chr15_KI270850v1_alt    256039 32 +    430880 ACAGAGAGGAGACA-GGGA-GTCACATTTCAGAA
s gorGor5.CYUI01015946v1       354608 32 +    378907 ACAGAGAGGAGACA-GGGA-GTCACATTTCAGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62600417 32 + 169600520 ACAGAGAGGAGACA-GGGA-ATCACATTTCAGAA
i rheMac8.chr7              I 2 C 0
s macFas5.chr7              106520812 32 - 171882078 ACAGAGAGGAGACA-GGGA-GTCACATTTCAGAA
i macFas5.chr7              I 2 C 0
s macNem1.NW_012011056v1      6254785 32 -   6271500 ACAGAGAGGAGACA-GGGA-GTCACATTTCAGAA
i macNem1.NW_012011056v1    I 2 C 0
s cerAty1.NW_012001384v1      5147492 32 +   5160157 ACAGAGAGGAGACA-GGGA-GTCACATTTCAGAA
i cerAty1.NW_012001384v1    I 2 C 0
s chlSab2.chr26               7718199 32 +  58131712 ACAGAGAGGAGATG-GGGA-GTCACATTTCAGAA
i chlSab2.chr26             I 3899 C 0
s manLeu1.NW_012105520v1      1105387 32 +   1458659 ACAGAGAAGAGACA-GGGA-ATCACATTTCAGAA
i manLeu1.NW_012105520v1    I 2 C 0
s colAng1.NW_012116021v1       315907 33 +   4111199 ACGGAGAGGAGACAGGGGA-Gtcacatttcagaa
i colAng1.NW_012116021v1    I 2 C 0
s saiBol1.JH378276            2890053 29 +   3282555 GC--AGAGGAGTC--GGGA-GCCGCATGTCGGAA
i saiBol1.JH378276          C 0 C 0
s aotNan1.NW_018511953v1      2762371 31 -   3745603 ACAGAGAGGAGTC--GGGA-GTCGCATTTCGGAA
i aotNan1.NW_018511953v1    C 0 I 89
s otoGar3.GL873530            8735441 32 -  36342412 ACAGAGAACAGACA-GGGA-GCCACAtttggaaa
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30               1740442 32 -  40214260 ACCCAGAGGAAGCA-GGGAGGTCGCGGTCGGGG-
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             206760 19 -   1040364 GCAGAGAGGAGGCG-GGGA-G-------------
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  56890546 223 + 124595110 I
e calJac3.chr10             114233801 1939 - 132174527 M
e cebCap1.NW_016107979v1       842496 127 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=64043.000000
s hg38.chr15_KI270850v1_alt    256071 13 +    430880 AGACCTATgcttt
s gorGor5.CYUI01015946v1       354640 13 +    378907 AGACCTATgcttt
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62600449 13 + 169600520 GCACCTATGCTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106520844 13 - 171882078 GCACCTATGCTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6254817 13 -   6271500 GCACCTATGCTTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5147524 13 +   5160157 GCACCTATGCTTT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7718231 13 +  58131712 GCACCTgtgcttt
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1105419 13 +   1458659 GCACCTATGCTTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       315940 13 +   4111199 gcacctatgcttt
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2890082 13 +   3282555 GCACCTCTgcttt
i saiBol1.JH378276          C 0 I 14
s otoGar3.GL873530            8735473 13 -  36342412 gcacctctgcttt
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30               1740474 13 -  40214260 AGGCCTCTGCTCT
i canFam3.chr30             C 0 I 1
s dasNov3.JH572216             206779 10 -   1040364 ---CTGATGTTTA
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1      2762402 89 -   3745603 I
e mm10.chr9                  56890546 223 + 124595110 I
e calJac3.chr10             114233801 1939 - 132174527 M
e cebCap1.NW_016107979v1       842496 127 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=-5290.000000
s hg38.chr15_KI270850v1_alt    256084 1 +    430880 -a
s gorGor5.CYUI01015946v1       354653 1 +    378907 -a
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62600462 1 + 169600520 -C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106520857 1 - 171882078 -c
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6254830 1 -   6271500 -C
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5147537 1 +   5160157 -C
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7718244 1 +  58131712 -a
i chlSab2.chr26             C 0 I 7
s manLeu1.NW_012105520v1      1105432 1 +   1458659 -C
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       315953 1 +   4111199 -c
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530            8735486 1 -  36342412 -a
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH572216             206789 1 -   1040364 G-
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1      2762402 89 -   3745603 I
e mm10.chr9                  56890546 223 + 124595110 I
e calJac3.chr10             114233801 1939 - 132174527 M
e canFam3.chr30               1740487 1 -  40214260 I
e cebCap1.NW_016107979v1       842496 127 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2890095 14 +   3282555 I
e panTro5.chrY               25711902 0 -  26350515 C

a score=21518.000000
s hg38.chr15_KI270850v1_alt    256085 13 +    430880 gatgctgtatctc
s gorGor5.CYUI01015946v1       354654 13 +    378907 gatgctgtatctc
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62600463 13 + 169600520 ACTACTGTATCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106520858 13 - 171882078 actactgtagctc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6254831 13 -   6271500 AATACTGTATCTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5147538 13 +   5160157 AATACTGTATCTT
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1105433 13 +   1458659 ACTACTGTATCTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       315954 13 +   4111199 aatactgtatctc
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530            8735487 13 -  36342412 aatacctgacctc
i otoGar3.GL873530          C 0 I 20
s canFam3.chr30               1740488  6 -  40214260 GGTGCC-------
i canFam3.chr30             I 1 C 0
s dasNov3.JH572216             206790  9 -   1040364 GGAgctgta----
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1      2762402 89 -   3745603 I
e mm10.chr9                  56890546 223 + 124595110 I
e calJac3.chr10             114233801 1939 - 132174527 M
e cebCap1.NW_016107979v1       842496 127 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7718245  7 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2890095 14 +   3282555 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=27837.000000
s hg38.chr15_KI270850v1_alt    256098 25 +    430880 gggctgggcgctgtggctcatgcct
s gorGor5.CYUI01015946v1       354667 25 +    378907 aggctgggcgctgtggctcatgcct
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62600476 25 + 169600520 Aggccaggctcggtggctgacgcct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106520871 25 - 171882078 aggccaggctcggtggctcacgcct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6254844  3 -   6271500 AGG----------------------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5147551 25 +   5160157 Aggccaggctcggtggctgacgcct
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1105446 25 +   1458659 Aggctaggctcggtggctgacgcct
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       315967 25 +   4111199 aggccaggctcagtggctgacgcct
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr30               1740494  8 -  40214260 -----------------TGCTGCCG
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             206799 19 -   1040364 ------agcgccttatctcatctcc
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1      2762402 89 -   3745603 I
e mm10.chr9                  56890546 223 + 124595110 I
e calJac3.chr10             114233801 1939 - 132174527 M
e cebCap1.NW_016107979v1       842496 127 +   1024465 I
e otoGar3.GL873530            8735500 20 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7718245  7 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2890095 14 +   3282555 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=297618.000000
s hg38.chr15_KI270850v1_alt    256123 138 +    430880 gtaattccaggactttgggaggccgaggtgggcagatcaggaggtcaggagatcaagaccatcctggctaacacggtgaaaccctgtttctactaaaaatacaaaaaattagccgggtgtggtggcccgcacctgtag
s gorGor5.CYUI01015946v1       354692 138 +    378907 gtaattccaggactttgggaggccaaggtgggcagatcaggaggtcaggagatcaagaccatcctggctaacacggtgaaaccctgtttctactaaaaatacaaaaaattagccgggtgtggtggcccgcacctgtag
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62600501 137 + 169600520 gtaatcccagcactttgggaggctgaggtgggcggatcatgaggtcaggagatcaagaccatcctggctatcatgatgaaaccctgtctctactaaaaatacaaaaaatta-cagggtgtggtggcacgcgcctgtag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106520896 137 - 171882078 gtaatcccagcactttgggaggctgaggtgggcggatcatgaggtcaggagatcaagaccatcctggctatcatgatgaaaccctgtctctactaaaaatacaaaaaatta-cagggtgtggtggcacgtgcctgtag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6254847 131 -   6271500 ------ccagcgctttgggtggctgaggtgggcggatcatgaggtcaggagatcaagaccatcctggctatcatgatgaaaccctgtctctactaaaaatacaaaaaatta-cagggtgtggtggcacgcgcctgtag
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5147576 137 +   5160157 gtaatcccagcgctttgggtggctgaggtgggcggatcatgaggtcaggagatcaagaccatcctggctatcatgatgaaaccctgtctctactaaaaatacaaaaaatta-cagggtgtggtggcatgcgcctgtag
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1105471 137 +   1458659 gtaatcccagcactttgggaggctgaggtgggcggatcatgaggtcaggagatcaagaccatcctggctatcatgatgaaaccctgtctctactaaaaatacaaaaaatta-cagggtgtggtggcacgcgcctgtag
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       315992 137 +   4111199 gtaatcccagcactttgggaggctgagatgggtggatcatgaggtcaggaaatcaagaccatctgggctatcacgatgaaaccctgtctctactaaaaatacaaaaaatta-cagggtatggtggcacgtgcctgtag
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr30               1740502  53 -  40214260 TTCCTTCCC---CTCCGGGCAGTC-----------------------GGAGGACAGCCCCAT-------------------TCCCGTTCCT----------------------------------------CCTGCGG
i canFam3.chr30             C 0 C 0
e aotNan1.NW_018511953v1      2762402  89 -   3745603 I
e mm10.chr9                  56890546 223 + 124595110 I
e calJac3.chr10             114233801 1939 - 132174527 M
e dasNov3.JH572216             206818   0 -   1040364 C
e cebCap1.NW_016107979v1       842496 127 +   1024465 I
e otoGar3.GL873530            8735500  20 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7718245   7 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2890095  14 +   3282555 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=45167.000000
s hg38.chr15_KI270850v1_alt    256261 20 +    430880 tcccagctactcaggaggct
s gorGor5.CYUI01015946v1       354830 20 +    378907 tcccagctattcaggaggct
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62600638 20 + 169600520 tcccagcttctcaggaggct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106521033 20 - 171882078 tcccagctactcaggaggct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6254978 20 -   6271500 tcccagctactcaggaggct
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5147713 20 +   5160157 tcccagctactcaggaggct
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1105608 20 +   1458659 tcccagctactcaggaggct
i manLeu1.NW_012105520v1    C 0 M 733
s colAng1.NW_012116021v1       316129 20 +   4111199 tcccagctactcaggaggct
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr30               1740555  2 -  40214260 CC------------------
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             206818 15 -   1040364 tcccaagtaccctgg-----
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1      2762402 89 -   3745603 I
e mm10.chr9                  56890546 223 + 124595110 I
e calJac3.chr10             114233801 1939 - 132174527 M
e cebCap1.NW_016107979v1       842496 127 +   1024465 I
e otoGar3.GL873530            8735500 20 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7718245  7 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2890095 14 +   3282555 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=60982.000000
s hg38.chr15_KI270850v1_alt    256281 32 +    430880 gaggcaggagaatcgcttgaatctgggaggca
s gorGor5.CYUI01015946v1       354850 32 +    378907 gaggcaggagaatcgcttgaatctgggaggca
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62600658 32 + 169600520 gaggcaggagaatcgcttgaacctgggagaca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106521053 32 - 171882078 aaggcaggagaatcgcttgaacctgggagaca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6254998 32 -   6271500 gaggcaggagaatcgcttgaacctgggagaca
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5147733 32 +   5160157 gaggcaggagaatcgcttgaacctgggagaca
i cerAty1.NW_012001384v1    C 0 C 0
s colAng1.NW_012116021v1       316149 32 +   4111199 gaggcaggagaatcgcttgaacctgggagaca
i colAng1.NW_012116021v1    C 0 C 0
s canFam3.chr30               1740557 17 -  40214260 ---------------CTTCAGCCTGGGAGGAG
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             206833 10 -   1040364 gaggcaggaa----------------------
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1      2762402 89 -   3745603 I
e mm10.chr9                  56890546 223 + 124595110 I
e calJac3.chr10             114233801 1939 - 132174527 M
e cebCap1.NW_016107979v1       842496 127 +   1024465 I
e otoGar3.GL873530            8735500 20 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1105628 733 +   1458659 M
e chlSab2.chr26               7718245  7 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2890095 14 +   3282555 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=14795.000000
s hg38.chr15_KI270850v1_alt    256313 5 +    430880 gaggt
s gorGor5.CYUI01015946v1       354882 5 +    378907 gaggt
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62600690 5 + 169600520 gaggt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106521085 5 - 171882078 gaggt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6255030 5 -   6271500 gaggt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5147765 5 +   5160157 gaggt
i cerAty1.NW_012001384v1    C 0 C 0
s colAng1.NW_012116021v1       316181 5 +   4111199 gaggt
i colAng1.NW_012116021v1    C 0 C 0
s mm10.chr9                  56890769 5 + 124595110 gtggt
i mm10.chr9                 I 223 C 0
s canFam3.chr30               1740574 5 -  40214260 GGGGT
i canFam3.chr30             C 0 C 0
e aotNan1.NW_018511953v1      2762402 89 -   3745603 I
e calJac3.chr10             114233801 1939 - 132174527 M
e dasNov3.JH572216             206843 0 -   1040364 C
e cebCap1.NW_016107979v1       842496 127 +   1024465 I
e otoGar3.GL873530            8735500 20 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1105628 733 +   1458659 M
e chlSab2.chr26               7718245 7 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2890095 14 +   3282555 I
e panTro5.chrY               25711902 0 -  26350515 C

a score=90798.000000
s hg38.chr15_KI270850v1_alt    256318 78 +    430880 tgcagtgagccgagatcacaccactgcactccagcctgggcaa-cagagcgagagactctgtctc-aaaataaaataaaa
s gorGor5.CYUI01015946v1       354887 75 +    378907 tgcagtgagccgagatcacaccactgcactccagcctgggcaa-cagagtgagagactctgtctc-aaaataaaata---
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62600695 75 + 169600520 tgcagtgagccgaaatcgcgccactatactccagcctgggcaa-cagagcgaga----ctgtctcaaaaataaaataaaa
i rheMac8.chr7              C 0 I 14
s macFas5.chr7              106521090 75 - 171882078 tgcagtgagccgaaatcgcgccactatactccagcctgggcaa-cagagcgaga----ctgtctcaaaaataaaataaaa
i macFas5.chr7              C 0 I 14
s macNem1.NW_012011056v1      6255035 77 -   6271500 tgcagtgagccaaaatcgcgccactatactccagcctgggcaa-cagagtgaga--ctctgtctcaaaaataaaataaaa
i macNem1.NW_012011056v1    C 0 I 14
s cerAty1.NW_012001384v1      5147770 77 +   5160157 tgcagtgagccaaaatcgcgccactatactccagcctgggcaa-cagagcgaga--ctctgtctcaaaaataaaataaaa
i cerAty1.NW_012001384v1    C 0 I 14
s colAng1.NW_012116021v1       316186 77 +   4111199 tgcaatgagccgaaatcgcgccactgtactccagcctgggcaa-cagagtgaga--ctctgtctcaaaaataaaataaaa
i colAng1.NW_012116021v1    C 0 I 9
s mm10.chr9                  56890774 43 + 124595110 tgcagggaattgaactcagg-------acctctggaagagcagtcagtgc------------------------------
i mm10.chr9                 C 0 C 0
s dasNov3.JH572216             206843  5 -   1040364 -------------------------gcact--------------------------------------------------
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1      2762402 89 -   3745603 I
e calJac3.chr10             114233801 1939 - 132174527 M
e canFam3.chr30               1740579  0 -  40214260 C
e cebCap1.NW_016107979v1       842496 127 +   1024465 I
e otoGar3.GL873530            8735500 20 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1105628 733 +   1458659 M
e chlSab2.chr26               7718245  7 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2890095 14 +   3282555 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=11726.000000
s hg38.chr15_KI270850v1_alt    256396 6 +    430880 tatccc
s gorGor5.CYUI01015946v1       354962 4 +    378907 --tccc
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62600784 6 + 169600520 tatctc
i rheMac8.chr7              I 14 C 0
s macFas5.chr7              106521179 6 - 171882078 tatctt
i macFas5.chr7              I 14 C 0
s macNem1.NW_012011056v1      6255126 6 -   6271500 tatctc
i macNem1.NW_012011056v1    I 14 C 0
s cerAty1.NW_012001384v1      5147861 6 +   5160157 tatctc
i cerAty1.NW_012001384v1    I 14 C 0
s chlSab2.chr26               7718252 6 +  58131712 tatctc
i chlSab2.chr26             I 7 C 0
s colAng1.NW_012116021v1       316272 6 +   4111199 tatctc
i colAng1.NW_012116021v1    I 9 C 0
e aotNan1.NW_018511953v1      2762402 89 -   3745603 I
e mm10.chr9                  56890817 0 + 124595110 C
e calJac3.chr10             114233801 1939 - 132174527 M
e dasNov3.JH572216             206848 0 -   1040364 C
e canFam3.chr30               1740579 0 -  40214260 C
e cebCap1.NW_016107979v1       842496 127 +   1024465 I
e otoGar3.GL873530            8735500 20 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1105628 733 +   1458659 M
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2890095 14 +   3282555 I
e panTro5.chrY               25711902 0 -  26350515 C

a score=58150.000000
s hg38.chr15_KI270850v1_alt    256402 20 +    430880 ctttcttcctcacaactcct
s gorGor5.CYUI01015946v1       354966 20 +    378907 ctttcttcctcacaactcct
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62600790 20 + 169600520 ctttcttccccacaactcct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106521185 20 - 171882078 ctttcttccccacaactctt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6255132 20 -   6271500 ctttcttccccacaactcct
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5147867 20 +   5160157 ctttcttccccacgactctt
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7718258 20 +  58131712 ctttcttcctcacagctcct
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1       316278 20 +   4111199 ctttcttccccacaactctt
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2890109 20 +   3282555 ctttcttccgcacaactcct
i saiBol1.JH378276          I 14 C 0
s mm10.chr9                  56890817 11 + 124595110 ------tcttaaccact---
i mm10.chr9                 C 0 C 0
e aotNan1.NW_018511953v1      2762402 89 -   3745603 I
e calJac3.chr10             114233801 1939 - 132174527 M
e dasNov3.JH572216             206848  0 -   1040364 C
e canFam3.chr30               1740579  0 -  40214260 C
e cebCap1.NW_016107979v1       842496 127 +   1024465 I
e otoGar3.GL873530            8735500 20 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1105628 733 +   1458659 M
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=59959.000000
s hg38.chr15_KI270850v1_alt    256422 19 +    430880 ctgggaaccagaacttatg
s gorGor5.CYUI01015946v1       354986 19 +    378907 ctgggaaccagaacttatg
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62600810 19 + 169600520 ctgggagccagaacttatg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106521205 19 - 171882078 ctgggagccagaacttatg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6255152 19 -   6271500 ctgggagccagagcttatg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5147887 19 +   5160157 ctgggagccagaacttatg
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7718278 19 +  58131712 ctgggagccagaacttatg
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1       316298 19 +   4111199 ctgggagccagaacttatg
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2890129 19 +   3282555 ccgggagctggagcccgtt
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            8735520 19 -  36342412 ctgggagataaaaattatt
i otoGar3.GL873530          I 20 C 0
s mm10.chr9                  56890828 15 + 124595110 ----gagccatctctccaC
i mm10.chr9                 C 0 C 0
e aotNan1.NW_018511953v1      2762402 89 -   3745603 I
e calJac3.chr10             114233801 1939 - 132174527 M
e dasNov3.JH572216             206848  0 -   1040364 C
e canFam3.chr30               1740579  0 -  40214260 C
e cebCap1.NW_016107979v1       842496 127 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1105628 733 +   1458659 M
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=67819.000000
s hg38.chr15_KI270850v1_alt    256441 15 +    430880 gtccccattttccac
s gorGor5.CYUI01015946v1       355005 15 +    378907 gtccccattttccac
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62600829 15 + 169600520 atccccgttttccac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106521224 15 - 171882078 atccccgttttccac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6255171 15 -   6271500 atccccgttttccac
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5147906 15 +   5160157 atccccgttttccac
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7718297 15 +  58131712 gtccccattttccac
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1       316317 15 +   4111199 atccccgttttccac
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2890148 14 +   3282555 ctcccca-tttccac
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530            8735539 15 -  36342412 gtccccattttccac
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56890843 15 + 124595110 ATACACACTTCTTAC
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1740579 14 -  40214260 GTCCCCG-TCTCCAC
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             206848 13 -   1040364 gtccccattttcc--
i dasNov3.JH572216          C 0 C 0
e aotNan1.NW_018511953v1      2762402 89 -   3745603 I
e calJac3.chr10             114233801 1939 - 132174527 M
e cebCap1.NW_016107979v1       842496 127 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1105628 733 +   1458659 M
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=44089.000000
s hg38.chr15_KI270850v1_alt    256456 11 +    430880 caatggaagct
s gorGor5.CYUI01015946v1       355020 11 +    378907 caatggaaact
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62600844 11 + 169600520 caatggaagct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106521239 11 - 171882078 caatggaagct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6255186 11 -   6271500 caatggaagct
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5147921 11 +   5160157 caatggaagct
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7718312 11 +  58131712 caatggaagct
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1       316332 11 +   4111199 cagtggaagct
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2890162 10 +   3282555 -agtggaaacg
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       842623 11 +   1024465 caatggaaacg
i cebCap1.NW_016107979v1    I 127 C 0
s otoGar3.GL873530            8735554 11 -  36342412 ggatggaaact
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56890858 10 + 124595110 CTGTGGAAAT-
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1740593 11 -  40214260 CTGCGGGAATG
i canFam3.chr30             C 0 C 0
e aotNan1.NW_018511953v1      2762402 89 -   3745603 I
e calJac3.chr10             114233801 1939 - 132174527 M
e dasNov3.JH572216             206861  0 -   1040364 C
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1105628 733 +   1458659 M
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=1859193.000000
s hg38.chr15_KI270850v1_alt    256467 281 +    430880 gaggccctaaaagggtcagtctcttcctgcacccaaaggcaGAACATGAAGGG--TACT-----------------------------------------GCTGGGGCCTGACTGCCAGCCCTGGGCCTGCCCCTAGGTGGAAGAGCATCTGATCCAGTACCTGCACGATGGGAGCAAGACACT----GACGGTTTTGTCCTGATGGCTAATGCCTCTGAGATGGACCGCCAGAGCCATCCTGTGGCCTTCACTGTCACCATCCTGCCTGTCAATGGCCAA-CCCCCGACCTCA-TACAAACTCAGGCCTGCAGGTGAGCATATTCCTGG
s gorGor5.CYUI01015946v1       355031 281 +    378907 gaggccctaaaagggtcagtCTCTTCCTGCACCCAAAGGCAGAACATGAAGGG--TGCT-----------------------------------------GCTGGGGCCTGACTGCCAGCCCTGGGCCTGCCCCTAGGTGGAAGAGCATCTGATCCAGTACCTGCACGATGGGAGCAAGACACT----GACGGTTTTGTCCTGATGGCTAATGCCTCTGAGATGGACCGCCAGAGCCATCCTGTGGCCTTCACTGTCACCATCCTGCCTGTCAATGGCCAA-CCCCCGACCTCA-TACAAACTCAGGCCTGCAGGTGAGCATATTCCTGG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62600855 285 + 169600520 gaagccctgaa--agTCAGTCTCCTCCTGCACCCAAAGGCAGGGCATGAAGGG--TGCT-----------------------------------------GCTGGGTCCTGACTGCCAGCCCTGGGCCTGCCCCTCGGTGGAAGAGCAGCTGATCTGCTATGTGCACGAGGGGAGCGAGACACTGACAGACAGTTTTGTCCTGATGGCTAATGTCTCGGAGATGGACCGCCAGAGCCATCCTGTGGCCTTCACTGTCACCATCCTGCCTGTCAATGGCCAACCCCCCGACCTCACCACAAACTCAGGCCTGCAGGTGAGCGTATTCCTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106521250 285 - 171882078 gaagccctgaa--agTCAGTCTCCTCCTGCACCCAAAGGCAGGGCATGAAGGG--TGCT-----------------------------------------GCTGGGTCCTGACTGCCAGCCCTGGGCCTGCCCCTCGGTGGAAGAGCAGCTGATCTGCTATGTGCACGAGGGGAGCGAGACACTGACAGACAGTTTTGTCCTGATGGCTAATGTCTCGGAGATGGACCGCCAGAGCCATCCTGTGGCCTTCACTGTCACCATCCTGCCTGTCAATGGCCAACCCCCCGACCTCACCACAAACTCAGGCCTGCAGGTGAGCGTATTCCTGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6255197 224 -   6271500 gaagccctgaa--agTCAGTCTCCTCCTGCACCCAAAGGCAGGGCATGAAGGG--TGCT-----------------------------------------GCTGGGTCCTGACTGCCAGCCCTGGGCCTGCCCCTCGGTGGAAGAGCAGCTGATCTGCTGTGTGCACGAGGGGAGCGAGACACTGACAGACAGTTTTGTCCTGATGGCTAATGTCTCGGAGATGGACCGCCAGAGCCATCCTGTGGCCTTCACTGTCACCATCCTGCCT-------------------------------------------------------------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5147932 285 +   5160157 gaagccctgaa--agTCAGTCTCCTCCTGCACCCAAAGGCAGGGCATGAAGGG--TGCT-----------------------------------------GCTGGGTCCTGACTGCCAGCCCTGGGCCTGCCCCTCGGTGAAAGAGCAGCTGATCTGCTATGTGCACGAGGGGAGCGAGACACTGACAGACAGTTTTGTCCTGATGGCTAATGTCTCGGAGATGGACCGCCAGAGCCATCCTGTGGCCTTCACTGTCACCATCCTGCCTGTCAATGGCCAACCCCCCAACCTCACCACAAACTCAGGCCTGCAGGTGAGCGTATTCCTGG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7718323 284 +  58131712 gaagccctaaaagagtcagtCTCCTCCTGCACCCAAAGGCAGGACATGAAGGG--TGCT-----------------------------------------GCTGGGGCCTGACT---AGCCCTGGGCCTGCCCATAGGTGGAAGAGCAGCTGATCCGCTACGTGCACGACGGGAGCGAGACACTGACAGACAGTTTTGTCCTGATGACTGACACCTCCGAGATGGGCTGCCAGAGCCATACTGTGGCCTTCACTGTCACCGTCCTGCGTGTCAATGACCAACCCCCCGTCCTCACTACAAACACAGGCCTGCAGGTGAGAGTATTCCTGG
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1       316343 274 +   4111199 gaagccctgaa--agTCAGTCTCCTCATGCACCCAAAAGCAGGGCAT------------------------------------------------------CTGGGTCCTGACTGCCAGCCATGGGCCTGCCCCTCGGTGGAAGAGCAGCTGATCTGCTGTGTGCACGAGGGGAGCGAGACACTGACAGACAGTTTTGTCCTGATGGCTAACGTCTCGGAGATGGACCGCCAGAGCCATCCTGTGGCCTTCACTGTCACCATCCTGCCTGTCAATGGCCAACCCCCCAACCTCACCACAAACTCAGGCCTGCAGGTGAGCTTATTCCTGG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2890172 283 +   3282555 ggggccctgaaagagtcagtctcctgc--c-cCCAAAGGCAGGACACGGA-GG--TGCC-----------------------------------------GCTGGGGCCTGACCGCCAGCCCTGGGCCTGCCCCTAGGTGGAAGAGCAGCTCGTCCGCTACGTGCACGACGGGAGCGAAACACTGACGGACAGTTTCGTCCTGATGGCGAACGCCTCCGAGATGGACCGCCAGAGCCATCCTGTGGCCTTCACTGTCACCATCCGGCCTGTCAACGACCAACCCCCCGTCCTCACCACAAACACTGGCCTGCAGGTGAGAGCATCCCTGG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       842634 286 +   1024465 gaggccctgaaagagtcagtCTCCTCCTGC-ACCAAAGGCAGGACATGGAGGG--TGCT-----------------------------------------GCTGGGGCCTGACCGCCAGCCCTGGGCCTGCCCCTAGGTGGAAGAGCAGCTCATCCGCTACGTGCACGACGGGAGCGAGACACTGACAGACGGTTTTGTCCTGATGGCGAACGCCTCCGAGTCGGACCGCCAGAGCCATCCTGTGGCCTTCACTGTCACCGTCCTGCCTGTCAACGACCAACCCCCCATCCTCACCACAAACACCGGCCTGCAGGTGAGAGCATCCCTGG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2762491 287 -   3745603 gaggccccgaaagggtcagtCTCCTCCTGCACCCAAAGGCAGGACACGGAGGG--TGCT-----------------------------------------GCTGGGGCCTGACCGCCAGCCCTGGGCCTGCCTCTAGGTGGAAGAGCAGCTCATCCGCTACGTGCACGACGGGAGCGAGACACTGACAGACGGTTTTGTCCTGATGGCGAACGCCTCCGAGACGGACCGCCAGAGCCATCCTGTGGCCTTCACTGTCACCGTCCTGCCTGTCAACGACCAACCCCCGGTCCTCACCACAAACACCGGCCTGCAGGTGAGAGCATCCCTGG
i aotNan1.NW_018511953v1    I 89 C 0
s otoGar3.GL873530            8735565 289 -  36342412 gaagttttgaaagactcagtgttttccagcacctacaggcagggtgcacagggtatgct-----------------------------------------gccagggcctgaccaccagccctctgcctgcctttaggtgcaagagcagctgatccactacatcCATGACGGGAGCGAGACACAGACAGACAGATTCGTCCTGGTGGCTAATGCCTCCGAGATGGACCGCCAGAGCCAGCCTGTGGCCTTCACCATCACCATCCTGCCTGTTAACGACCAGCCCCCAATGCTCACCTCAAACACAGGCCTGCGGGTAAGCGCATCCCTGG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56890868 314 + 124595110 -GTGTTCTAAAGGGATCTGTCTCCT---GTACCTAACAATGGGACGTTAAGGG--TGCTGGTCCCAAG----------ATCCCTGTTGAGTCTTGGGCTAGCTGAAGCCTGACAACCAATCCTGGGTCTCCTCATAGGTGGAAGAGCAGCTGATCCGCTACGTGCATGATGGAAGTGAGACACAGACAGACGCCTTTGTTCTGCTAGCTAATGCCTCAGAGATGGACCGCCAGAGCCAGCCCGTGGCCTTCACGATCACCATCCTTCCTGTTAATGACCAACCCCCTGTTCTCACCACAAACACAGGCCTGCAAGTGAGTTCACTCCTGA
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1740604 314 -  40214260 GAAGCGCGGAGGGAGCCCGTC-CCTCCCACACCCAGAGGCAGAGCACGAGGGG--TGCCGGGGTGGAG-----CCCGCGCCGCCCTCAGGCCT-------GCCAGGGCCTGGCCTTCAGCCTCGGGCCTGCCCACAGGTAGAACAGCAGCAGATCCGCTATGTGCACGACGGGAGTGAGACGCTGACAGACAGCTTCACCCTAGTGGCTAACGCCTCCGAGCTGGACCGCCAGAGCCACCCTGTGGCCTTCACCATCACCGTCCTGCCCGTCAATGACCAACCGCCCATCCTCACCGCAAACACAGGCCTAACGGTGAGAGCAGCCTGG-
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             206861 283 -   1040364 ----------------------------gcacccaaaggcagagcagggaggG--TGCTGGGCCTGAGACCCACCCGCGTGCCT----------------GCTGGGGCCTGCCCGCCGGCCACCGGCCTGC-TGTAGGTGGAGCAGCAGCTGATCCGCTACGTGCACGACGGGAGCGAGACGCTGACAGACGGCTTCGTCCTCCTGGCCAATGCCTCGGAGATTGACCGCCAGAGCCAGCCCGTGACCTTGACCGTCACCGTCCTGCCTGTCAACGACCAGCCCCCCGTCCTCTCCATGAACACAGGCCTACAGGTGAGCGCATCCCTGA
i dasNov3.JH572216          C 0 C 0
e calJac3.chr10             114233801 1939 - 132174527 M
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1105628 733 +   1458659 M
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=1177765.000000
s hg38.chr15_KI270850v1_alt    256748 224 +    430880 ---GACCA-CCCCCCATGTCTGCTTTGAGAAAGAGGCCA-ATGTCCCCTACTTCCCGGCACAGAT--ctcccccactc------tgagcctcagtttcctcctctgcaaaatgaggacactactgtgtgcctcacgcagttgttggaaggagagatgtgagattgtgcTG-AAATAGAACACAGGTGGGAGGTTTTGTTATTGGACATTTGCAAGTACGGTAGGCAGACTTCTGAGCA
s gorGor5.CYUI01015946v1       355312 224 +    378907 ---GACCA-CGCCCCATGTCTGCTTTGAGAAAGTGGCCA-ATGTCCCCTACTTCCCGGCACAGAT--ctccccctctc------tgagcctcagtttcctcctctgcaaaatgaggacactactgtgtgcctcacgcagttgttggaaggagagatgtgagattgtgcTG-AAATAGAACACAGGTGGGAGGTTTTGTTATTGGACATTTGCAAGTACGGTAGGCAGACTTCTGAGCA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62601140 221 + 169600520 ---GAC---CCCCCCATGTCTGCTTTGAGAAAGAGGCCA-GCGTCCCCTACTTCCTACCGCAGAT--ctcccccattc------tgagcctcagtatcctcctctgcaaaatggggccactaccgtgtgcctcacgcagttgttggaaggagagatgtgagattgtgctg-aaatagaacactGGTGGGAGGTTTTGTTACTGGACGTTTGCAA-TACTGTAGGCGGACTTCTGAGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106521535 223 - 171882078 ---GACCA-CCCCCCATGTCTGCTTTGAGAAAGAGGCCA-GCATCCCCTACTTCCTACCGCAGAT--ctcccccattc------tgagcctcagtatcctcctctgcaaaatggggccactaccgtgtgcctcacgcagttgttggagggagagatgtgagattgtgcTG-AAATAGAACACCGGTGGGAGGTTTTGTTACTGGACGTTTGCAA-TACGGTAGGCGGACTTCTGAGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6255421 193 -   6271500 -------------------------------AGAGGCCA-GCGTCCCCTACTTCCTACCGCAGAT--ctcccccattc------tgagcctcagtatcctcctctgcaaaatgtggccactaccgtgtgcctcacgca---gttggaaggagagatgtgagattgtgctg-aaatagaacactGGTGGGAGGTTTTGTTACTGGACGTTTGCAA-TACTGTAGGCGGACTTCTGAGCA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5148217 220 +   5160157 ---GACCA-CCCCCCATGTCTGCTTTGAGAAAGAGGCCA-GCGTCCCCTACTTCCTACTGCAGAT--ctccccctctc------tgagcctcagtatcctcctctgcaaaatggggccactactgtgtgcctcatgca---gttggaaggagagatgtgacattgtgctg-aaaTAGAACACTGGTGGGAGGTTTTGTTACTGGACGTTTGCAA-TACTGTAGGCGGACTTCTGAGCA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7718607 223 +  58131712 ---CACCA-TCCCCCATGTCTGCTTCAAGAAAGAGGCCA-GCATCCCCTACTTCCCAGCACAGAG--ctccccctgtc------tgagcctcagtttcctcctatgcaaaatggggacgctgccgcatgcctcatggggttgttggaaggagagttgtgagattgtgctg-aaatggaacacaggtgggaggttttgtta-tGGACACTTGCAAGTAAGGTAGGCAGACTTCTGAGCA
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1       316617 205 +   4111199 ---GAT---CACCCCATGTCTGCTTTGAGAAAGAGGCCA-GTGTCCCCTACTTCCTGCCACAGAT--ctccccctctc------tgagcctcagtatcctcgtctgcaaaatggg-------------gCCTCATGCA---GTTGGAAGGAGAGATGTGAGATTGTGCTG-AAATAGAACACTGGTGGGAGGTTTTGTTATTGGACGTTTGCAA-TACTGTAGGCAGACTTCTGAGCA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114235740 223 - 132174527 ---GACCA--CCCCCAT-TCTGCTTCAAGAAAGAGGCCA-GCGTCCCCTCCCTcctggtacagagctctccccctctc------tgagcctcagtttcctcctctgcaaat-gggggcgctgctgcacgcctcacgcggtggctggaaggagagatgtgagattgtgctg-aaacagagcacagGCGGGAGGTTTTGCTGCTGGACGCTCGCAGGTAAGGCAGGCAGACTTCTGAGCG
i calJac3.chr10             M 1939 C 0
s saiBol1.JH378276            2890455 220 +   3282555 ---GACCA--CCCCCATGGCTGCTTCGAGAAAGAGGCCA-GCGTCGCCTCCCTCCCGGCGCAGAG--CTCCCcttctc------tgagcctcagtttcctcctctgcgaac--ggggcgctgccacgtgcctcacgcagtggctggaaggagcgatgtgagaCGGCGCCG-AAACGGAACG-GGGCGGGAGGTTCTGCTGCTGGGCGCTCGCGGGCACGGCGGGCGGACTCCTGGGCA
i saiBol1.JH378276          C 0 M 688
s cebCap1.NW_016107979v1       842920 219 +   1024465 ---GACCA--CCCCCATGTCTGCTTCGAGAAAGAGGCCA-GCGTCCCCTCCC-CCTGGCACAGAG--ctccccctctc------tgagcctcagtttcctcctctgcaaat--ggggcagtgctgtgtgcctcacgcggtggctggaaggagagatgtgagattgtgcTG-AAACAGAGCA-AGGCGGGAGGTTTTGCTGTTGGACGCTCGCAGGTACGGCAGGCTGACTTCTGAGCG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2762778 222 -   3745603 ---GACCA-CCCCCCATGTCTGCTTCGAGAAAGAGGCCA-GCGTCCCCTCCCTCCTGACACAGAG--ctccccctctc------tgagccccagtttcctcctctgcaaat--ggggcgctgccgcatgcctcacgcggtggctggaaggaaagatattagattgtgctg-aaaCAGAACACAGGCGGGAGGTTTTGCTGTTGGACGCTCGCAGGTACGGCAGGCAGACTTCTGAGCG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8735854 216 -  36342412 -----------GACCATCTCTGCTCCTAAAAAGAGGCCAGGAGCTCCCTACTCCCTTGTATAGAG--CTCCCATtctc------taagcctcagtttcctcttctgcaaaatggggacactgccacatgcctcacaaggtcatgggaaggaaaggtgtgatattgcatagaaaacagaacacagA-AAGAGGTTTTGTTCTTAGGCACTTAGGAGTGCAGCAGGCAG--TTCTAAATG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56891182 182 + 124595110 ----ACCT--ATCCCATCTCTGGTCCCAGAAAGAGACTA-Gagtccctt------------------ctctct--------------ggctcagtgtcatcctctgtgaaatgggttcactaccacaaac------------ttggaaggagagatgtgaTACAGTGCTGAAAACAAAACGCAGTTGTGAGGTTTTGTTACTGGGCAGTCTTGG-TTTAGAAAGACCATCCTTG----
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1740918 200 -  40214260 ---GATCA-CCTCCCACCTCC-CGCCCAAAGAGAGGCCC-----------------AGCACAGAG--CTCCCCGCCCCCACCCATGAGCCC--GTCGCTTTCTCT---AAGTGTGGACCGTGCCACATGCCTCTAG--GTGGTGGGGAAGAGCTATG-------GCACTGAAAGTAGGGCACAGGTGTGAGACTTGGTTGTTGAACACTTAGAAGTGCGGCAGGCAGTCTCGCGAATG
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             207144 219 -   1040364 AAACACCATCTCCCCAT-----CCCGGAGAGAGAG-CCA-GGATCCCCCCCTTCCCAGCGGAAGA--GTCCCcctttc------t---tctcaatttcctcctctgtaaagtggggacaCGGCCATATGCCTTAGCACATTAGCAGGAGGAGAGAGGAGGCAGTGCTCTGAAAGTGGAATAGCTGTGTGAGGCTTTGTTGTTGGACACTTATAAGTG-AGTGGATAGCCTTGTGAATG
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1105628 733 +   1458659 M
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=114100.000000
s hg38.chr15_KI270850v1_alt    256972 26 +    430880 GC--CATGGGTGGCTCTG-------CTGTTC----------CTTC------------------------
s gorGor5.CYUI01015946v1       355536 26 +    378907 GC--CATGGGTGGCTCTG-------CTGTTC----------CTTC------------------------
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62601361 26 + 169600520 GC--GACGGGTGGCTCTG-------CTGTTC----------CTTT------------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106521758 26 - 171882078 GC--CACGGGTGGCTCTG-------CTGTTC----------TTTC------------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6255614 26 -   6271500 GC--GACGGGTGGCTCTG-------CTGTTC----------CTTT------------------------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5148437 26 +   5160157 GC--CACGGGTGGCTCTG-------CTGTTC----------CTTT------------------------
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7718830 26 +  58131712 GC--CACAGGTGGCTCTG-------CTGTTC----------CTTC------------------------
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1       316822 26 +   4111199 GC--CACGGGTGGCTCTG-------CTGTTC----------CTCT------------------------
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114235963 26 - 132174527 GC--CACGCGTGGCTCTG-------CAGTTT----------CTTC------------------------
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       843139 26 +   1024465 GC--CACGCGTGGCTCTG-------CTGTTT----------CTTC------------------------
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2763000 26 -   3745603 GC--CACGCGTGGCTCTG-------CTGTTT----------CTTC------------------------
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8736070 28 -  36342412 GCTGCACACTTGGCTCTC-------CTGGTC----------CCTG------------------------
i otoGar3.GL873530          C 0 I 24
s mm10.chr9                  56891364 43 + 124595110 AC--CTTGCCTGTCCTTGGACCCACCTGTTCACAGAAAGGTTTTC------------------------
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1741118 26 -  40214260 GC--CATCCTTGGCCCTG-------CCCTTC----------CCTG------------------------
i canFam3.chr30             C 0 I 24
s dasNov3.JH572216             207363 50 -   1040364 GC--TGTGCTGGACCCTC-------CTCTTT----------CCTAGACTCATCCACAGCAGGACACTTT
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1105628 733 +   1458659 M
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2890675 688 +   3282555 M
e panTro5.chrY               25711902  0 -  26350515 C

a score=605816.000000
s hg38.chr15_KI270850v1_alt    256998 91 +    430880 TCCTGTGGCTTAGGACCAGAACACCTGAAAGAATCACTTACAAGCCCTTA-AGGGCTGGCGTCAGGGT-GGGA--CCGTTAAGCTTCCCACCTTC
s gorGor5.CYUI01015946v1       355562 89 +    378907 TCCTGTGGCTTAGGACCAGAACACCTGAAAGAATCAC--ACAAGCCCTTA-AGGGCTGGCATCAGGGT-GGGA--CCGTTAAGCTTCCCACCTTC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62601387 91 + 169600520 TCCTGTGGCTTAGGACCAGAACACCTGACAGAATCACTTACAAGCCCTTA-AGGGCAGACGTCAGGGT-GGGA--CCATTAAGCTTCCCACCTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106521784 91 - 171882078 TCCTGTGGCTTAGGACCAGAACACCTGACAGAATCACTTACAAGCCCTTA-AGGGCAGACGTCAGGGT-GGGA--CCATTAAGCTTCCCACCTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6255640 91 -   6271500 TCCTGTGGCTTAGGACCAGAACACCTGACAGAATCACTTACAAGCCCTTA-AGGGCAGACGTCAGGGT-GGGA--CCATTAAGCTTCCCACCTTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5148463 91 +   5160157 TCCTGTGGCTTAGGACCAGAACACCTGACAGAATCACTTACAAGCCCTTA-AGGGCAGACGTCAGGGT-GGGA--CCATTAAGCTTCCCACCTTC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7718856 92 +  58131712 TCCTGTGGCTCAGGACCAGAACTCCCGACAGAATCACTTACAAGCCTGTA-AGGGCAGGTGTCAGGGCAGGAG--CCAATAAGCTTCCCACCTTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1106361 91 +   1458659 TCCTGTGGCTTAGGACCAGAACACCTGACAGAATCACTTACAAGCCCTTA-AGGGCAGACGTCAGGGT-GGAA--CCATTAAGCTTCCCACCTTC
i manLeu1.NW_012105520v1    M 733 C 0
s colAng1.NW_012116021v1       316848 87 +   4111199 TCCTGTGGCTTAGGACCAGAACACCTGACAGAATC----ACAAGCCTTTA-AGGGCAGATGTCAGGGT-GGGA--CCATTAAGCTTCCCACCTTC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114235989 93 - 132174527 TCCTGTGGCTCAGGACCAGAACACCTGCCAGAATCACTTACAAGCCCTTACAAGGCAGGCGTCAGGAC-TGAA-GCCATTAAGCTTCCCACCTTC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       843165 92 +   1024465 TCCTGCGGCTCAGGACCAGAACACCTGCCAGAATCACTTACAAGCCCTTA-AGGGCAGGCGTCAGGGC-GGGA-GCTGTTAAGCTCCCCACCTTC
i cebCap1.NW_016107979v1    C 0 I 390
s aotNan1.NW_018511953v1      2763026 92 -   3745603 TCCTGCGGCTCAGGACCAGAACACCTGCCAGAATCACTTACAAGCCCTTA-AGGGCAGGCGTCAGGGT-GGGA-GCCGTTAAGCTTCCCACCTTC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8736122 92 -  36342412 CCCTGGGGCTCAGGGCCAGAGTACTGGACAGAATTTCTTACCTGCCCTTA-TGCATGGACTGCAGGTA-GGGG-GCAGTTAAGCTTCCCACCTCC
i otoGar3.GL873530          I 24 I 1
s mm10.chr9                  56891407 81 + 124595110 CCTCATGTCTCAGGCCCAAAATACCTAAAGAAATGTATTATAAGTCCTGT-ATTGTGGGCTGCAGGTT-GGGA--GCTCGAGGGT----------
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1741168 91 -  40214260 TTCTGTGGCTCCGGACCAGACCTCCTGAAGAAAGTTCTTTCAGGCCCTAA-AGGGCGGA--TCCAGGT-GGAGCGTGGTTAAGCTCCCCGCTTCC
i canFam3.chr30             I 24 I 1
s dasNov3.JH572216             207413 91 -   1040364 TTCTCCAGCTCAGGACCAGAACTCCCGCAGAAAGTTATTGCA-GCCCTCG-ACGGTGGGCTCCGGGTG-GGCA-GCACTTAAGCTCCTCGCTCCC
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2890675 688 +   3282555 M
e panTro5.chrY               25711902  0 -  26350515 C

a score=573387.000000
s hg38.chr15_KI270850v1_alt    257089 108 +    430880 -ACCCCAGCAAGTGGAGGCCTCAGCTTGGCTTCCCAAACTCCTG-CCCCT----TGTCCACAgcagagcagg---gcccccatttggcaaaggtggaagttgaggcccagagatggg
s gorGor5.CYUI01015946v1       355651 108 +    378907 -ACCCCAGCAAGTGAAGGCCTCAGCTTGGCTTCCCAAACTCCTG-CCCCT----TGTCCACAGCAGAGCAGG---Gcccccgtttggcaaaggtggaagttgaggcccagacatggg
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62601478 108 + 169600520 -ACCCCAGCACGTGAAGGCCACGGCTTGGCTCCCCAAACTCCTG-Ccctt----gtgccacagcagagcagg---gcccccatttggcagaggtggaagttgaggcccagacatggg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106521875 108 - 171882078 -ACCCCAGCACGTGAAGGCCACGGCTTGGCTCCCCAAACTCCTG-CCCTT----GTGCCACAGCAGAGCAGG---Gcccccatttggcagaggtggaagttgaggcccagacatggg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6255731 108 -   6271500 -ACCCCAGCATGTGAAGGCCACGGCTTGGCTCCCCAAACTCCTG-TTCTT----GTGCCACAgcagagcagg---gcccccatttggcagaggtggaagttgaggcccagacatggg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5148554 108 +   5160157 -ACCCCAGCACGTGAAGGCCACGGCTTGGCTCCCCAAACTCCTG-TTCTT----GTGCCACAgcagagcagg---gcccccatttggcagaggtggaagttgaggcccagacatggg
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7718948 104 +  58131712 -ACCCCAGCAAGTGAAGGCCACGGCTTGGCTCCCCAAACTCCTGCCCCTT----GTGCCACAGCAGAGCAGG---GCCCCCGTTTGGCA-----GGAACCCAGGGCCCAGACATGGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1106452 108 +   1458659 -ACCCCAGCACGTGAAGGCCACGGCTTGGCTCCCCAAACTCCTG-Ccctt----gtgccacagcagagcagg---gcccccatttggcagaggtggaagttgaggcccagagatggg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       316935 108 +   4111199 -ACCCCAGCACGTGAAGGCCACGGCTTGGCTCCCCAAACTCCTG-Ccctt----gtgccacagcagagcagg---gcccccatttggcagaggtggaagttgaggcccagacatgga
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114236082 109 - 132174527 -ACCCCAGCAAGTGAAGGACACGGCCTGGCTCCCCAAACTCCTGCCCCTT----GTGCCACAGCAGAGCAGG---Gcccccattcggcaggggtggaagtggaggcccagacatggg
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018511953v1      2763118 108 -   3745603 --ACCCAGCAAGTGAAGGCCACGGCCTGGCTCCCCAAACTCCCGCCCCTT----GTGCCACAGCAGAGCAGG---GCCCCCATTCGGCAGGGCTGGAAGTGGAGGCCCAGACGTGGG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8736215 112 -  36342412 -CCTCCAGTAAGCCAAGTCCACAGCTTGGCTCCCTGAGCTCCTGCCCCTT----TTGTCATAGCAGAGCAGAGGTGCCCCCAGCCATCAGAGGCAGAAATTGAGTCCCAGACAGGGG
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  56891488  42 + 124595110 ---CACAGCAAATAAAGATCACAACGAAGCTTCCCTATATATAG-G-----------------------------------------------------------------------
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1741260 112 -  40214260 -CCCACAGCAAGGGAGGGCCACAGCTTGGCTTCCCGAGCCCCTG-CCCCTCACATCGCCCCAGAATGGTGGC---Gccgtcactcagcagaagccaaagctgaggcccagcccggtc
i canFam3.chr30             I 1 C 0
s dasNov3.JH572216             207504  81 -   1040364 ACCCCCAGCAAGGAAAGGCCACAGCTTAGTTCCC-----------ACTCT-------------------------GTCccccctcagcagaggtagaagctgaggcccagggaggtg
i dasNov3.JH572216          C 0 C 0
e cebCap1.NW_016107979v1       843257 390 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2890675 688 +   3282555 M
e panTro5.chrY               25711902   0 -  26350515 C

a score=632739.000000
s hg38.chr15_KI270850v1_alt    257197 127 +    430880 atggaacttctccatgattgcaaaagtagtt-ctggtggaacagaaaGGGCATGGCTTTACTAAGCCCACGTGGCAGGGCTTTGAAC---------------CCCAGCTTCTGGGGCGCGTCCTCCCCAGTCAGCAGAAGCCA
s gorGor5.CYUI01015946v1       355759 127 +    378907 atggaacttctccatgattgcaaaagtagtt-ctggtggaacagaaatggCATGGGTTTACTAAGCCCACATGGCAGGGCTTTGAAC---------------ACCAGCTTCTGGGATGCGTCCTCCCCAGTCAGCAGAAGCCA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62601586 127 + 169600520 atgggacttctccatggttgcagaagtagtt-ctggtggaacAGAAAGGGCATGGCTTTACTAAGCCCACATGGCAGGGCTTTGAAC---------------GCCAGCTTCTGGGGTGCGTCCTCCCCAGTCAGCAGGAGTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106521983 127 - 171882078 atgggacttctccatggttgcagaagtagtt-ctggtggaacagaaaGGGCATGGCTTTACTAAGCCCACATGGCAGGGCTTTGAAC---------------GCCAGCTTCTGGGGTGCGTCCTCCCCAGTCAGCAGGAGTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6255839 127 -   6271500 atgggacttctccatggttgcagaagtagtt-ctggtggaacAGAAAGGGCACGGCTTTACTAAGCCCACATGGCAGGGCTTTGAAC---------------GCCAGCTTCTGGGGTGCGTCCTCCCCAGTCAGCAGGAGTCA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5148662 127 +   5160157 atggaacgtctccatggttgcagaagtagtt-ctggtggaacAGAAAGGGCATGGCTTTACTAAGCCCGCATGGCAGGGCTTTGAAC---------------GCCAGCTTCTGGGGTGCATCCTCCCCAGTCAGCAGGAGTCA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7719052 127 +  58131712 GTGGAACTTCTCCATGCTTGTGAAAGTAGTT-CTGGTAGAACAGAAAGGGCATGGCTTCACTAAGCCCACATGGCAGGGCTTTGAAT---------------GCCGGCTTCTGGGGTGCGTCCTCCTGGGTCAGCAAGAGTCA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1106560 127 +   1458659 atggaacttctccatggttgcagaagtagtt-ctggtggaacAGAAAGGGCATGGCTTTACTAAGCCCGCATGGCAGGGCTTTGAAC---------------GCCAGCTTCTGGGGTACGTCCTCCCCAGTCAGCAGGAGTCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       317043 127 +   4111199 atgggacttctccatggttgcagaagtagtt-ctggtggaacAGAAAGGGCATGGCTTTACTAAGCCCACATGGCAGGGCTTTGAAC---------------GCCAGCTTCTGGGGTGCGTCCTCCCCAGTCAGCAGGAGTCA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114236191 123 - 132174527 ctggaacctct-catggttgcacaggtagtt-CTGCTGGAACAGAAAGGGCGTGCGCTTACTAAGCCCACGTGGCAGGGCTTTGAAC---------------GCCAGCTTCCAGGGGGCATCCTCCCTGGTCAG---GAGCCA
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018511953v1      2763226 123 -   3745603 CTGGAACCTCT-CATGGCTACACAGGTAGTT-CTGCTGGAACAGAAAGGGCGTGCGTTTACTAAGCCCACGTGGCAGGGTTTTGAAT---------------GCCAGCTTCTGGGGGGCATCCTTCCCGGTCAG---GAGCCA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8736327 103 -  36342412 ATAAAACTTCATCATGGTTACAAGAGTAGTTACTGGAGGAACAGAAGGGATGTGGC-------------------------TTGAAT---------------TCCAGCGTGGCAGGTTCATTCTCCCCCATCAACAGGAGCCA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr30               1741372  68 -  40214260 acagcatttctccacggtcacagaagtagtt-aCGGGGGAACAGAAAGGGCACGGCGTGGCCAAGATCA--------------------------------------------------------------------------
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             207585 141 -   1040364 acagaacttctccacggtcacaaaagttgtcactgatgaaacA-AAAGGGTGTGGCTAGA-GGTGCCCACACAGCACGATGGTGGATGCGCAGGGCTCACAGGCTGGACTTTGGGGTGTGCGCTCCTGGGTCAGCAGGAGCCA
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  56891530   0 + 124595110 C
e cebCap1.NW_016107979v1       843257 390 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2890675 688 +   3282555 M
e panTro5.chrY               25711902   0 -  26350515 C

a score=197929.000000
s hg38.chr15_KI270850v1_alt    257324 36 +    430880 CTGAAGGTTCCGCAAGAGGGCTGACTTGGGCTGTCT
s gorGor5.CYUI01015946v1       355886 36 +    378907 CTGAAGGTTCCGCAAGAGGGCTGACTTGGGCTGTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62601713 36 + 169600520 CTGAAGGTTCCACAAGAGGGCTGACTTGGGCTGTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106522110 36 - 171882078 CTGAAGGTTCCACAAGAGGGCTGACTTGGGCTGTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6255966 36 -   6271500 CTGAAGGTTCCACAAGAGGGCTGACTTGGGCTGTCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5148789 36 +   5160157 CTGAAGGTTCCACAAGAGGGCTGACTTGCGCTGTCT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7719179 36 +  58131712 CTGAAGGTTCCACAGGAGAGCTGACTTGGGCTGTCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1106687 36 +   1458659 CTGAAGGTTCCACAAGAGGGCTGACTTGGGCTGTCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       317170 36 +   4111199 CTGAAGGTTCCACAAGAGGGCTGACTTGCGCTGTCT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114236314 35 - 132174527 CTGAAGTTTCCACA-GAGGGCTGACTTGGTCTGTCT
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018511953v1      2763349 35 -   3745603 CTGAAGGTTCCACA-GAGGGCTGACTTGGGCTGTCT
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8736430 36 -  36342412 TAGAAAGTCCCAGAAGAGAGTTAATATGGGCTGTCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56891530 29 + 124595110 CTGAGGGT----CTAGATAACTAA---GGGATGCCT
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1741440 24 -  40214260 ----------CACGAGATGGTGGAC--GGGCAGGGC
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             207726 33 -   1040364 TGCAAGGTTTCAAAGGAGGA-TGAC--GGGCTGTCT
i dasNov3.JH572216          C 0 C 0
e cebCap1.NW_016107979v1       843257 390 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2890675 688 +   3282555 M
e panTro5.chrY               25711902  0 -  26350515 C

a score=366444.000000
s hg38.chr15_KI270850v1_alt    257360 79 +    430880 CTGACATGGGGCAC--CGGGGGG--CTTTGGTGGTCTAGGATGTGCCTGTAGGGGGTGGCCTCATGGTGCGGACGCCACAGAA
s gorGor5.CYUI01015946v1       355922 78 +    378907 CTGACATGGGGCAC--CGGGGG---CTTTGGTGGTCTAGGATGTGCCTGTAGGGGGTGGCCTCATGGTGTGGAGGCCACAGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62601749 79 + 169600520 CTGACATGGGGCAC--TGGGGGG--CTTTGGTGGTCTAGGATGTGCCTGTAGGGGGTGGCCTCATGATGCGGAGGCCACAGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106522146 79 - 171882078 CTGACATGGGGCAC--TGGGGGG--CTTTGGTGGTCTAGGATGTGCCTGTAGGGGGTGGCCTCATGATGCGGAGGCCACAGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6256002 81 -   6271500 CTGACATGAGACACCGCGGGGGG--CTTTGGTGGTCTAGGATGTGCCTGTAGGGGGTGGCCTCGTGGTGTGGAGGCCACAGAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5148825 81 +   5160157 CTGACATGGGGCACCGCGGGGGG--CTTTGGTGGTCTAGGATGTGCCTCTAGGGGGTGGCCTCGTGGTGTGGAGGCCACAGAT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7719215 81 +  58131712 CTGACATGGGGCGCTGAGTGGGG--CTTTGGTGGTCTAGGATGTGCCCATAGGGGGTGGCCTCATGGTGCGGAGGTCACAGGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1106723 80 +   1458659 CTGACATGGGGCACCGCGGGGGG--CTTTCGTGGTCTAGGCTGTGCCTGTA-GGGGTGGCCTCATGATGTGGAGGCCACAGAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       317206 81 +   4111199 CTGACATGGGGCACCGTGGGGGG--CTTTGGTGGTCTAGGATGTGCCTGTAGAGGGTGGCCTCGTGGTGCGGAGGCCACAGAA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114236349 80 - 132174527 GTGATGT-GGGCAC--TGGGGGGGACTTTGGTGGTCTAGGATGTGCCCGTAGAGGGCGGCCTGGTGGTGGGGAGGCCAATGAA
i calJac3.chr10             C 0 I 4
s aotNan1.NW_018511953v1      2763384 79 -   3745603 CTGATGTGGGGCGC--TGGGGGG--CTTTGGTGGTCTAGGATGTGCCCATAGAGGGCGGCCTGGTGGTGGGGAGGCCGCTGAA
i aotNan1.NW_018511953v1    C 0 I 4
s otoGar3.GL873530            8736466 66 -  36342412 CTGGCATGGGGCAA--AGGAAGG--CTTTTATGG-------------AATAAGGGCCAGCCTGGCAGTGGGGAGGCCAGCAAA
i otoGar3.GL873530          C 0 I 1
s canFam3.chr30               1741464 76 -  40214260 CTGAT---GGACAC--CGGACGC--CTTTGATGGCAGAGGCTGTGGCTGTGGGGAGTGGTCCAGGGGTGGGGCGGCCGCAGAG
i canFam3.chr30             C 0 I 6
s dasNov3.JH572216             207759 42 -   1040364 CTGACATGGGACGC--TGGGAAT--CGTC--------AGGATGTGCCTATGGCG-----------------------------
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  56891559  0 + 124595110 C
e cebCap1.NW_016107979v1       843257 390 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2890675 688 +   3282555 M
e panTro5.chrY               25711902  0 -  26350515 C

a score=137187.000000
s hg38.chr15_KI270850v1_alt    257439 27 +    430880 GAGTGGGACACAG-------CAC--CCTGGAACCAC
s gorGor5.CYUI01015946v1       356000 27 +    378907 GAGTGGGACACAG-------CAC--CCTGGAACCAC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62601828 27 + 169600520 GAGTGGGACACAG-------CGT--CGTGGAACCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106522225 27 - 171882078 GAGTGGGACACAG-------CGT--CGTGGAACCAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6256083 27 -   6271500 GAGTGGTACACAG-------CGT--TGTGGAACCAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5148906 27 +   5160157 GAGTGGGACACAG-------CGT--CGTGGAACCAC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7719296 27 +  58131712 GAGCTTAACACAG-------TGC--TCTGGAACCAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1106803 27 +   1458659 AAGTGGTACACAG-------CGT--CGTGGAACCAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       317287 27 +   4111199 GAATGGGACACAG-------CGT--CGTGGAACCAC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114236433 27 - 132174527 GAGTGGGACACAG-------CGC--TCCGGAACCAC
i calJac3.chr10             I 4 C 0
s cebCap1.NW_016107979v1       843647 27 +   1024465 GAGTGGGACACAG-------CGC--TCAGGAACCAC
i cebCap1.NW_016107979v1    I 390 C 0
s aotNan1.NW_018511953v1      2763467 27 -   3745603 GAGTGGGACACAG-------CGC--TCAGGAACCAC
i aotNan1.NW_018511953v1    I 4 C 0
s otoGar3.GL873530            8736533 34 -  36342412 GAATGGGACATGGACTAGGACCC--CTCTAGACCAC
i otoGar3.GL873530          I 1 C 0
s canFam3.chr30               1741546 29 -  40214260 GGGTGCGGCTCGG-------GGCTGCCCGGAACCAC
i canFam3.chr30             I 6 C 0
s dasNov3.JH572216             207801 13 -   1040364 ----AGGACCCAG-------CAA--C----------
i dasNov3.JH572216          C 0 C 0
e mm10.chr9                  56891559  0 + 124595110 C
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2890675 688 +   3282555 M
e panTro5.chrY               25711902  0 -  26350515 C

a score=689951.000000
s hg38.chr15_KI270850v1_alt    257466 107 +    430880 AGGCTGGGATGGCTGTGTGGCAGTGCGGCCACCAGGTGGTGCCATCTACCCGTGTTTG-TTCCGGGAGCCCAGTGATGGGGCC------CTGCCTCCCACAGTATGGCCCCTCT
s gorGor5.CYUI01015946v1       356027 107 +    378907 AGGCTGGGATGGCTGTGTGGCAGTGCGGCCACCAGGTGGTGCCATCTACCCGCGTTTG-TTCCGGGAGCCCAGTGATGGGGCC------CTGCCTCCCACAGTATGGCCCCTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62601855 107 + 169600520 AGGGCGGGATGGCTGTGTGGCAGCGTGGCCACCAGATGGGACCATCCCCCTGTGTTTG-CTCCGGGAGCCCAGCGATGGGGCC------CTGCCCCCGACACTATGGCCCCTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106522252 107 - 171882078 AGGGCGGGATGGCTGTGTGGCAGCGTGGCCACCAGATGGGACCATCCCCCTGTGTTTG-CTCCGGGAGCCCAGCGATGGGGCC------CTGCCCCCGACACTATGGCCCCTCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6256110 107 -   6271500 AGGGCGGGATGGCTGTGTGGCAGTGTGGCCACCAGGTGGGACCATCCCCCTGTGTTTG-CTCCGGGAGCCCAGAGATGGGGCC------CTGCCCCCGACACTATGGCCCCTCC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5148933 107 +   5160157 AGGGCGGGATGGCTGTGTGGCAGTGTGGCCACCAGGTGGGACCATCCCCCTGTGTTTG-CTCCGGGAGCCCAGCGATGGGGCT------CTGCCCCCGACACTATGGCCCCTCC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7719323 107 +  58131712 AGGCCAGGACGGCTGTGTGGCAGCACGGCCACCAGGTGGTGCCATCCACCCATGTTTG-CTCCGGGAGCCCTGCGATGGGGCC------CTGCTCCCCACATTATGGCCCCTCC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1106830 107 +   1458659 AGGGCGGGATGGCTGTGTGGCAGTGTGGCCACCAGGTGGGACCATCCCCCTGTGTTTG-CTCCGGGAGCCCAGCGATGGGGCT------TTGCCCCCGACACTATGGCCCCTTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       317314 107 +   4111199 GGAGTGGGATAGCTGTGTGGCAGCATGGCCACCAGGTGGGACCATCCCCCTGTATTTG-CTCCGGGAGACCATTGATGGGGCC------CTGCCCCCCACACTATGGCCCCTCC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114236460 107 - 132174527 AGGCCGGGACGGCTGTGTGGCAGCGTGGCCACCAGGTGGGGCCATCCACCCGTGTTTG-TTCCAGGAGCCCAACTCTCCGGCC------CTGCCCCCCACATTAAGGCCCCTCC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1       843674 107 +   1024465 AGGCCGGGACGGCTGTGTGGCAGCGCGGCCACCAGGTGGGGCCATCCACCCGTGCTTG-CTCCAGGAGCCCAGCGCTGGGGCC------CTGCCCCCCACATTAAGGCCCCTCA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2763494 106 -   3745603 AGGCCGGGACGACTGTGTGGCAGCACGGCCACCAGGTGGGGCCATCCACCCGTGTTTG-CTCCAGGAGCCCAGCGCTGGGGCC------CTG-CCCCCACATTAAGGCCCCTCC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8736567 106 -  36342412 AGGCCAGGACTGCTATGTGACAGCTCACCCACCAGATGGTGCCATTGCCCCATGTTTA-TTCCAGGAACTTAGTGAT-AAGCT------CTGCCCCACACATGAGAGTGCCTCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56891559  83 + 124595110 AAGTTGGAAATGATGTGTGGTAAATTGGCCACTAGGTGGCAATATCCACCCATGTTAGCCCCCTGGAGTCCAACACTGGTTTT-------------------------------
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1741575 109 -  40214260 AGGCCGGTGCTGCTGTGTGGCCCCTTGGCCACCAGGTGATGCTGTCC-TCAGCGTTTG-CGCAGG---CCCCGCGCTGAAGCCCCATCTCTGCGCACCGCACCGTGCTCCCCCT
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             207814  81 -   1040364 -------------------------GGTCCACCAGGTGGCGCCATCCACCCATGTTTG-CTCCAGGAGCCCAGGGCTAAAGTC------TCA-CCCGTACATTGTGGCCCCTCC
i dasNov3.JH572216          C 0 C 0
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e saiBol1.JH378276            2890675 688 +   3282555 M
e panTro5.chrY               25711902   0 -  26350515 C

a score=4054700.000000
s hg38.chr15_KI270850v1_alt    257573 613 +    430880 TGCCAAGGCTCGGCCTGAGGGCTCCCTGCGGCCAGGGGAGGAAGCCCAGGAATGCCAGAGGG--CTGTTTTCTGGGCATGTGAGTCCCACTGCAGCACTGCCCACAAGTAATTGACCCAGC--AAGAGTGGTAC-CAGGACCTCAGGAACGGGTGCCTGTTCTGCTTGCTAGTGGGAGGCC----TGAAAAGGGGCCCCCTTTGCCC----------------------------------AACACGAGGAGGGCCCGTAACTGCTCTGGAAGCACCTGGGCCCATCCCA-GCACTGCTTCTGTGCTGCAGGACAGTGCCAACCATCAGGCT-TCAGCTCTCTGCGCCTCCCACCCCTCCCTTAGCTGGAAGGAGTGCTCGTTT-----------------CTA-------------------AA------------------ATCACTGTTCCCACC----TGTGCCCAGCCCCT--GCCA---GGCACA---C-ATGGAGG-GTCTGAAAGGAGACTGCTGCCCCACCAGTGAGC------TAGATTAAGGAGCACTGTTGGTCAGCGCTGGGGGTTTCT-G-GGGGTGAGAACTTGGTGACGG--------TAAGAGCTAGGGCCTTCCTGGGTTGG-GT-ACACAAGCTGGTCTTGAGGGACACACAGGACTAGGACAGATGAAGAGCAGGGATGCTGGGCCTGGAGGGT------------GGCCTTCCC-------------TGGGGTGACA-GGGAA-GGTGAA
s gorGor5.CYUI01015946v1       356134 613 +    378907 TGCCAAGGCTCGGCCTGAGGGCTCCCTGCGGCCAGGGGAGGAAGCCCAGGAATGCCAGAGGG--CTGTTTTCTGGGCATGTGAGTCCCACTGCAGCACTGCCCACAAGTAATTGACCCAGC--AAGACTGGTAC-CAGGACCTCAGGAACGGGTGCCTGCTCTGCTTGCTAGTGGGAGGCC----TGAAAAGGGGCCCCCTTTGCCC----------------------------------AACACGAGGAGGGCCCGTAACTGCTCTGGAAGCACCTGGACCCATCCCA-GCACTGCTTCTGTGCTGCAGGACAGTGCCAACCATCAGGCT-TCAGCTCTCTGCGCCTCCCACCCCTCCCTTAGCTGGAAGGAGTGCTCGTTT-----------------CTA-------------------AA------------------ATCACTGTTCCCACC----TGTGCCCAGCCCCT--GCCA---GGCACA---C-ATGGAGG-GTCTGAAAGGAGACTGCTGCCCCACCAGTGAGA------CAGATTAAGGAGCACTGTTGGTCAGCGTTGGGGGTTTCT-G-GGGGTGAGAACTTGGTGAGGG--------TAAGAGCTAGGGCCTTCCTGGGTTGG-GT-ACACAAGCTGGTCTTGAGGGACACACAGGACTAAGACAGATGAAGAGCAGGGATGCTGGGCCTGGAGGGT------------GGCCTTCCC-------------TGGGGTGACA-GGGAA-GGTGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62601962 605 + 169600520 TGCCAAGGCTTGGCCTGAGGGCTCCCTAGGGCCGGGGGAGGAAGCCCAGAAATGGCAGAGGG--CTGTTTTCCGGGCATGTGAGTCCCCCTGTAGCACTGCCCACAAGTAATTGACCCAGC--AAGACTGGTAC-CAGGACCTCAGGAACAGGCGCCTGCTCTGCTTGCAAGTGGGAGGCC----TGGAAAGGGGTCCCCTTTGCCC----------------------------------AACACGAGGAGGGCCCGTAACTGCTCTGGAA--------GCCCATCCCA-GCACTGCTTCTGTGCTACGGGACAGCGTCAACCATCAGCCC-CCAACTCTCTGCACCTCCCACCCCTCCCTCAGCTGGAAGGAGGGCCCATTT-----------------CT--------------------AA------------------ATCACCATTCCCACC----TGTGCCCAGCCCCT--GCCA---GGCATA---C-ATGGAGG-GTCTGAAAGGAGACCCCTGTCCCACGAGTGAGA------CTGATTAAGGAGCACCGTTGGTCAGCGTTGGGGGTTTCTGG-GGGGTGAGAACTTGGTGAGGG--------TAAGAACTGGGGCCTTCCTGGGTAGG-GG-ACACAAGCTGGTCTTGAGGGACACACAGGACTAGGGCAGATGAAGAGCAGGGAGGCTGGACCTGGAGGGT------------GGCCTTCCC-------------TGGGGTGACA-GGGAA-GGTGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106522359 605 - 171882078 TGCCAAGGCTTGGCCTGAGGGCTCCCTAGGGCCGGGGGAGGAAGCCCAGGAATGGCAGAGGG--CTGTTTTCCGGGCATGTGAGTCCCCCTGTAGCACTGCCCACAAGTAATTGACCCAGC--AAGACTGGTAC-CAGGACCTCAGGAACAGGCGCCTGCTCTGCTTGCAAGTGGGAGGCC----TGGAAAGGGGTCCCCTTTGCCC----------------------------------AACACGAGGAGGGCCCGTAACTGCTCTGGAA--------GCCCATCCCA-GCACTGCTTCTGTGCTACGGGACAGCGTCAACCATCAGCCC-CCAACTCTCTGCACCTCCCACCCCTCCCTCAGCTGGAAGGAGGGCCCATTT-----------------CT--------------------AA------------------ATCACCATTCCCACC----TGTGCCCAGCCCCT--GCCA---GGCATA---C-ATGGAGG-GTCTGAAAGGAGACCCCTGTCCCACGAGTGAGA------CTGATTAAGGAGCACCGTTGGTCAGCGTTGGGGGTTTCTGG-GGGGTGAGAACTTGGTGAGGG--------TAAGAACTGGGGCCTTCCTGGATAGG-GG-ACACAAGCTGGTCTTGAGGGACACACAGGACTAGGGCAGATGAAGAGCAGGGAGGCTGGACCTGGAGGGT------------GGCCTTCCC-------------TGGGGTGACA-GGGAA-GGTGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6256217 616 -   6271500 TGCCAAGGCTTGGCCTCAGGGCTCCCTGGGGCCAGGGGAGGAAGCCCAGGAATGGCAGAGGG--CTGTTTTCCGGGCATGTGAGTCCCCCTGTAGCACTGCCCGCAAGTAATTGACCCAGC--AAGACTGGTAC-CAGGACCTCAGGAACAGGCACCTGCTCTGCTTGCAAGTGGGAGGCCTGCTTGCAAGTGGGTCCCCTTTGCCC----------------------------------AACACGAGGAGGGCCCGTAACTGCTCTGGAAGCCCCTGGGCCCATCCCA-GCACTGTTTCTGTGCTGCAGGACGGTACCAACCATCAGGCC-CCAACTCTCCGTGCCTCCCACCCCTCCGTCAGCTGGAAGGAGGGCCCATTT-----------------CT--------------------AA------------------ATCACCATTCCCACC----TATGCCCAGCCCCT--TCCA---GGCACA---C-ATGGAGG-GTCTGAAAGGAGACCCCTGTCCCACGAATGAGA------CAGATTAAGGAGCACTGTTGGTCAGCGTTGGGGGTTTCT-G-GGGGTGAGAACTTGCTGAGGG--------TAAGAACTGGGGCCTTCCTGGGTAGG-GG-ACACAAGCTAGTCTTGAGGGACACACAGGACTAGGGCAGATGAAGAGCAGGGAGGCTGGCCCTGGAGGGT------------GGCCTTCCC-------------TGGGGTGACA-GGGAA-GGTGAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5149040 612 +   5160157 TGCCAAGGCTTGGCCTCAGGGCTCCCTGGGGCCAGGGGAGGAAGCCCAGGAATGGCAGAGGG--CTGTTTTCCGGGCATGTGAATCCCCCTGTAGCACTGCCCGCAAGTAATTGACCCAGC--AAGACTGGTAC-CAGGACCTCAGGAACAGGCGCCTGTTCTGCTTGCAAGTGGGAGGCC----TGGAAAGGGGTCCCCTTTGCCC----------------------------------AACACGAGGAGGGCCCGTAACTGCTCTGGAAGCCCCTGGGCCCATCCCA-GCACTGCTTCTGTGCTGCCGGACGGTACCAACCATCAGGCC-CCAACTCTCCGTGCCTCCCACCCCTCCGTCAGCTGGAAGGAGGGCCCATTT-----------------CT--------------------AA------------------ATCACCATTCCCACC----TATGCCCAGCCCCT--TCCA---GGCACA---C-ATGGAGG-GTCTGAAAGGAGACCCCTGTCCCACGAATGAGA------CAGATTAAGGAGCACTGTTGGTCAGCATTGGGGGTTTCT-G-GGGGTGAGAACTTGCTGAGGG--------TAAGAACTGGGGCCTTCCTGGGTAGA-GG-ACACAAGCTAGTCTTGAGGGACACATAGGACTAGGGCAGATGAAGAGCAGGGAGGCTGGGCCTGGAGGGT------------GGCCTTCCC-------------TGGGGTGACA-GGGAA-GGTGAA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7719430 625 +  58131712 TGCCAAGGCTCAGCCTGAGGGCTCCCTGGGGCCGGGGGAGGGAGTCCAGGAATGCCAGAAAGCTCTGTTTCCCGGGCATGTGAGTCCCACTGCAACTCTGCCTGCAAGTAATTGACCCAGC--AAGACTGGTAC-CAGGACCTCAGGAACAGGCGCCTGCTCTGCTTGCAAGTGGGAGGCC----TGAAAAGGGGTCCCCTTCGCCC----------------------------------AACATGAGGAGGGCCCGTAACTGCTCTGGAAGCACCTGGGCCCATCGCA-GCGCTGATTCTGTGCTGCAGAACA-TGCCAACCATCAGCCC-CCCACTCTCCGCACC-ACCACCCCTCCCTCAGCTGGAAGGAGGGCCCGTTT-----------------CTA-------------------AA------------------ATCACCATTCCCACC----TGTGCCCGGCCCTG--GCCA---GGCACA---C-ACGGAGG-CTCTGAAAGGAGACCCCTGCCCCACCAGTGAGA------CAGATTAAGGAGCACTGTTGGTCGGCGTTGGGGGTTTCT-G-GGGCTGAGAACTTGGTGAGGG--------TAAGAACAGGGGCCTTCCTGGGTAGG-GG-ACACAAGCTGGCCTTGAGGGACACGCAGGACTAGGGCAGATGGAGAGCAAGGAGGCTGGGCCTGGAGGGTGACCTTCCCTGGGGCCTTCCC-------------TGGGGTGACA-GGGAA-GGTGAA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1106937 605 +   1458659 TGCCAAGGCTTGGCCTGAGGGCTCCCTAGGGCCGGGGGAGGAAGCCCAGGAATGCCAGAGGG--CTGTTTTCCGGGCATGGGAGTCCCCCTGTAGCACTGCCCTCAAGTAATTGACCCAGC--AAGACTGGTAC-CAGGACCTCAGGAACAGGCGCCTGCTCTGCTTGCAAGTGGGAGGCC----TGGAAAGGGGTCCCCTTTGCCC----------------------------------AACACGAGGAGGGCCCGTAACTGCTCTGGAA--------GCCCATCCCA-GCACTGCTTCTGTGCTAGGGGACAGCGCCAACCATCAGCCC-CCAACTCTCTGCACCTCCCACCCCTCACTCAGCTGGAAGGAGGGCCCATTT-----------------CTA-------------------AA------------------ATCACCATTCCCACC----TGTGCCCAGCCCCT--GCCA---GGCATA---C-ATGGAGG-GTCTGAAAGGAGACCCCTGTCCCACGAGTGAGA------CAGATTAAGGAGCACCGTTGGTCAGCGTTGGGGGTTTCT-G-GGGGTGAGAACTTGCTGAGGG--------TAAGAACTGGGGCCTTCCTGGGTAGG-GG-ACACAAGCTGGTCTTGAGGGACACACAGGACTAGGGCAGATGAAGAGCAGGGAGGCTGGGCCTGGAGGGT------------GGCCTTCCC-------------TGGGGTGACA-GGGAA-GGTGAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       317421 613 +   4111199 TGCCAAGGCTTGGCCTGAGGGCTCCCTAGGGCCAGGGGAGGAAGCCCAGGAATGCCAGAGGG--CTGTTTTCCGGGCATGTGAGTCCCACTGTAGCGCTGCCCGCAAGTAATTGACCCAGC--AAGACTGGTAC-CAGGACCTTAGGAATAGGAGCGTGCTCTGCTTGCAAGTGGGAGGCC----TGGAAAGGGGTCCCCTTTGCCC----------------------------------AACACAAGGAGGGCCCGTAACTGCTCTGGAAGCCCCTGGGCCCATCCCA-GCACTGCTTCTGTGCTGCAGGACAGTGCCAACCATCAGGCC-CCAACTCTCCATGCTTCCCACCCCTCCCTCAGCTGGAAGGAGGGCCCATTT-----------------CTA-------------------AA------------------ATCACCATTCCCACC----TGTGCCCAGCCCCT--TCCA---GGCACA---C-ATGGAGG-GTCTGAAAGGAGACCCCTGTCCCACGAGTGAGA------CAGATTAAGGAGCACTGTTGGTCAGCGTTGGGGGTTTCT-G-GGGGTGAGAACTTGGTGAAGG--------TAAGAACTGGGGCCTTCCTGGGTAGG-GG-ACACAAGCTGGTCTTGAGGGACACGCAGGACTAGGGCAGATGAAGAGCAGGGAGGCTGGGCCTGGAGGGT------------CGCCTTCCC-------------TGGGGTGACA-GGGAA-AGTGAA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114236567 626 - 132174527 TACCAGAGCTGGGCCCGAGGGCTCCCTGGGGCCGGGGGAGAGGGCCCAGGAATGCCAGAGGGCTCCATTTTCCCGGCATGTGAGCCCCACACCGGCATTGCCCACAAGTAATTGACCCAGC--AAGACCAGACCTCAGGACCTCAGGAACCGGCGCCTGCTCTGCTTGCAGGTGGGAGGCC----TGAAGAGGGGTCCCCTTCGCCC----------------------------------AGCATGAGCAGGGCCAGGAACTGCTCTGGAAGCACCTG-GCCCGTCCCA-GCACTGCTTCTGTGCTGCAGGACACTGCCAGCCACCAGCCCACCCACTCTCTGGGAATCCCAGCCCTCCCTCAGCTGGAAGGAGGGCCCATTT-----------------CCA-------------------AA------------------ATCACCGTTCCCACT-----GTGCACAGCCCTT--GCCA---GACACA---C-ATGAAGG-GCCTGAAAGGAGACCCCGGCCCCATCAGTGAGG------CAAATTAGGGAGCACTGTTGGTCAGGGTAGGGGGTTTTG-G-GGAGTGAGAACTTGGTGAGGG--------TAAGAGCTGGGGCATTCCTGGGCAGG-GG-ACACAGGCTGGCCTTGAGGGACATGTGGAACTAGGGCAGAGG-AAAGCAGGGAGGCTGGGCCTAGAGGGT------------GGCCTTCCC-TGGGGCGTTCCCTGGGGTGACA-GGGAA-GGTGAA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2891390 624 +   3282555 TGCCAGGGCTGGGCCTGAGGGCTCCCTGGGGCCAGGGGAGAGGGCCCAGGACTGCCAAAGGGCTCCATTTTCCGGGCATGTGAGCCCCATGCCAGCTCTGCCCACAAATAATGGGCCCAGC--AAGACCAGCCCTCAGGAGCTCAGGAACCGGCGCCGGCTCTGCTTGCACGTGGGAGGCC----TGAAGCGGGGTCCCCTTCGCCC----------------------------------AGCATGAGCAGGGCCCAGAACTGCTCTGGAAGCACCTG-GCCCGTCCCA-GCGCTGCTTCTGGGCCG-AGGACACTGCCAGCCATCGGCC--CCCACTCTCCGCGCGTCCCACCCCTCCCTCAGCTGGAAGGAGGGCCCATTT-----------------CCA-------------------AA------------------ATCACTGTTCCCACC-----ATGCCCAGCCCCT--GCCA---GACACA---C-ATGGAGG-GCCTCAAAGGAGACCCCGGCGCCATCAGCGAGG------CAAATTAGGGGGCACTGTTGGTCAGGGTCGGGGGTTTCT-G-GGGGTGAGAACTTGGTGAGGG--------TGAGAGCTGGGGCCTTCCTGGGCAGG-GG-ACACAAGCTGGCCTTGAGGGACACACGG-ACTAGGCTGGATGCAGAGCAGGGAGGCTGGGCCTGGAGGGT------------GGTCTTCCCTTGGGGCCTTCCCTGGGGTGACA-GGGAA-GGTGAA
i saiBol1.JH378276          M 688 C 0
s cebCap1.NW_016107979v1       843781 625 +   1024465 TGCCATGGCTGGGCCTGAGGGCTTCCTGGGGCCGGGGAAGAGGGCCCAGGAATGCCAGAGGGCTCCATTTTCTGGGCATGTGAGCCCCACGCCAGCACTGCCTGCAAATAATCGGCCCAGC--AAGACCAGACCTCAGGACCTCAGGAACCGGCACCTGCTCTGCTGGCCGGTGGGAGGCC----TGAAGAGGGGTCCCCTTCGCCC----------------------------------AGCATGAGCAGGCCCCGGAACCGCTCTGGAAGCACCTG-GCCCGTCCCA-GCACTGCTTCTGTGCCGCAGGACACTGCCAGCCATCAGCCCACCCAGTTT--GCACGTCCCACCCCTCCCTCAGCTGGAAGGAGGGCTCATTT-----------------CCA-------------------AA------------------ATCACCGTTCCCACC-----GTGCCCAGCCCCT--GCCA---GACACA---C-ATGGAGG-GCCTGAAAGGAGACCCCGGCCCCATCAGCGAGG------CAAATTAGGGAGCACTGTTGGTCAGGGTCGGGGGTTTCT-G-GGGGTGAGAACTTGGTGAGGG--------TAAGAGCTGGGGCCTTCCTGGGCAGG-GG-ACACAAGCTGGCCTTGAGGGACACATGGGACTAGGGCAGATGGAGAGCAGGGAGGCTGGGCCTGGAGGGC------------Agccttccc-tggggccttccctggggTGACA-GGGAA-GGTGAA
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2763600 613 -   3745603 TGCCAGGGCT-GGCCTGAGGGCTCCCTGGGGCCGGGGGAGAGGGCCCAGGAATGCCAGAGGGCTCCATTTTCCGGGCATGTGAGCCCCATGCCAGCACTGCCCGCAAATAATTGGCCCAGC--AAGACCAGACCTCAGGACCTCAGGAACTGGCACCTGCTCTGCTTGCC-GTGGGAGGCC----TGAAGAGGGGTCCCCTTCGCCC----------------------------------AGCATGAGCAGGGCCCGGAACTGCTCTGGAAGCACCTG-GCCCGTCCCA-GCGCTGCTTCTGTGCTGCAGGACACTGCCAGCCCTCAGCCCACCCACTCTCTGCGTGTCCCACCCCTCCCTCAGCTGGAAGGAGGGCCCATTT-----------------CCA-------------------AA------------------ATCACCATTCCCAAC-----GTGCCCAGCCCCT--GCCA---GACACA---C-ATGGAGG-GCCTGAAGGGAGACCCTGGCCCCATCAGTGAGG------CAAATTAGGGAGCACTGTTGGTCAGAGTCAGGGGTTTCT-G-GGGGTGAGAACCTGGTGAGGG--------TAAGAGCTGGGGCCTTCCTGGGCAGG-GG-ACACAAGCTGGCCTTGAGGGACACTTGGGACTAGGGCAGATGGAGAGCAGGGAGGCTGGGCCTGGAGGGT------------GGCCTTCCC-------------TGGGGTGACA-GGGAA-GGTGAA
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8736673 536 -  36342412 TTCCAGGGCTCAGCTTAGGCTCTGCCGGGGCCTAGGGGAGAAGGCCCAGGGATGACAGAGGGCTCTGTCTTCCAGTTAGTGTAGCCTATTCCCAACAGTGCCCATAAGTAACTGACCCAGC--AAGATTTGTCC-CAGGACCACAGGAA-------------------------AGGGGAC----TTGAGGGGGATGACCTTCAC--------------------------------------------------------------------------------TCCAT-GTGCTGCCTCCATGCTATGGGACATGGGCCAGTGCCAGCCTCCCTGCCTTCCCTGCCTCCC-CCTCCCCCACTGCTGGAAAGA--GCCCATTT-----------------CTAAGTATCCTGGGCAAGCCAGAA------------------ATCAGCATCCTGCCC----TATGCCCAGCCCCT--GCCC---AGCAT----C-ATGGACG--TCTGAAGGGAGACCCC--CCCCACCAGCAAGACAGAGCCAGATCTAGTAGCACTGTTGCTCAGGGCTAGGGGACTCT-GCAGAGAGGGAACTTGGGGAGGG--------TAAGAACTGGGGCCTTCTCAGGTAAG-GGCGCACAAGCTGGTCTTGA-GGATAAGCAAGATTGGGACAAATGAAGAAGAAGGATCCTGGGCCTGGAGGGC-------------------CC------------------------------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56891642 530 + 124595110 ------AACTTACTCTCGGA---CTCTGGGA--GGGAGAAGCAGCTCCTGGGTTTTAGAAGG--ACGTTTTCTGAG-ATGAGGGCCTCGTACCCAGAATGGCCTC-AGTGACTGGCCCTGT--GCCACATGGAA-CAGGG-CTCTGGAAGAAGACCTTGCCCTGCGTG--GGTGGGTAGCC----T---ATGGGGCCTCCCCTGCAC----------------------------------TGCACGGGTGGATTCCT----------------------AGCCGATTCA-GC---------------TAGGA----ATCAGGAATCAGCTC-TCCGCTCTC--CGCCTCCCTCCCGAGCTTCAACTGGCAGGAGAGCCTATTT-----------------CTA-------------------AGTGTTCTGCG---CTGGCCAACACCATTGCCTCTGTCCTGTGCCCA-CCCGC--GCCAGATGGTATATGCC-ATGGCAG-GAGGAAAGGGAAGGCCC--CCCCACCAGGGAGA------C----CCGGCAGCACCTTTGGTCAGGGACAGGGATCTCT---GAAGTAAGGACC--------------------AAACAGGAACATTTCTAGGCAGGAGG-TTGTGGTCTGGCTTTGAGGTACAATTAAGATCAGGGCTGGTGGAGA-------------------AGGAA--------------------C-------------CTGCGTGACA-GAAAA-GGAGAA
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1741684 605 -  40214260 -TCCAGGGCTC--CCCGGGGGTTAGCCTGGGACTGAGAAGGT--CCCTGGGATCCCAGAGGGCTCGGTTTTCCGGGGCTGGGAGCCCCTCCCTAAGGCAGCC--CAAGGTCCTGACCCAGCTGGGGCCATGTAA-CAGGATCCCAGAAACGGGATCCTGCCCTGCTGGCAGGTGGGAGGCC----CGACAGGGACTCCTCTTCCCTCTGAGCCTGGGGTGGGGCTGCCCGCACCCCTCCCTGACCTGGGTGGGCCTCGTGACCACGCTGGAAACACACGAGCCTTCGTCACGTGCTGCTTCCAGGCCACGGACAGGGGCCAAGCATCAGCCT-TTCCCACCCCGAGCCTCCCGTCCTTCCCTCACCTGGAAAGGGAGTGTGTTT-----------------ATC-------------------AGCGTCTTGGGGACGCGACCCTCACCATTCCCGTA---GTGTGCCCAGCCCGTC-CCCA---GACCCA---C-GTGC-----CCAGGAGGCAGGGCC--------------AGA------CGGTCGCGGTGCTGCCGCGGGTCGGGGCTGGGGGCTCTGCG-GCGGGGAGAGCCTGGTGAGGG--------AA-----------------GAGCGGG-GG-------GCTGGCCTCGCAGGACAAGCAGGATCAGGGC----GGAGAGAAGGGAGCCTGGG-----------------------------CC-------------CGGGGTGGCAGGGGAA-GGTCAC
i canFam3.chr30             C 0 C 0
s dasNov3.JH572216             207895 569 -   1040364 CTCTAGAGCTCTACCGCAGG-------------------TAGAGCCCAGGAATCCCAGCAGACTCTGTTCTGGGGGCATGGGAGTCCCTCCA-AACACTGTTCGCAAGTTGTTGACCCGGG--AGGATGG-----CTGGGACACGGGATCCTGT-CCTGCTGAGCATGGGGAGGGGCTGTC----TGCAAGCAGGCACCCCTCGCCC-----------------------------------CCCTGCCTGGGACCCAAGACTATGCTGGGAACACCTGGCCCTCACCCA-GAGCTGCCTTAGTGCTGCATGACG----------CCAGGCT-TTCAGTC-------------------------CTGAAAGGGCAGATATTTTAACTATATTGGACAGGGCAA-------------------AA------------------ACCAACATTGCCACC---ATGTGCCCAGCCCCCTGCCCA---GATGTG---CTGTGGAGGGGTCCGAGGAGA----CCAGGCCTACCAGGAAGACACAGCCAGATTAAGCAGCACTGTCGTTCAGGGT-GGGAGTTTCTGG-GGAGCAAGCACTTGTGGGGGGGGGGCATTTAAGAGCTGGGGC-TTCCTGAGGAGG-GG--CCTGAGCTGGCCTGGAGGGACCGGCAGCACTGGGGTACATGGAAAGGAGGGGTTCTGGG----------------------G------CC-------------TGAGGTCACA-GGGAACGGTGAA
i dasNov3.JH572216          C 0 n 0
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=7268802.000000
s hg38.chr15_KI270850v1_alt    258186 944 +    430880 TGCA-GGGAGG-CCATTTGTGCAGGGGAG-CCACAGCAGCGCCAGCCTTGATGCCACCTGAGGGCCTGAGCC-TCAGTG-GGGTTGGAGCCCTGGTGGCAGCCCAGGGCCGGGGAGGAA-GGGGTGGGTAAGTGTGGC-A------GGG-CAGAACCTTCACAGGCCTGTGTCCCCAGATGTGGGAGGGGGCCACCGTGCCCATCCCTACAGAGGCTCTGAGGAGCATGGATGGTTACTCTGGGCCC--AAGGACCTGGTGTACACCATTAAGCAGCCCAGCAATGGGTGGGTAGTGCAGTGGGCGGTGCCGGGCACTGAGGTGCGCAGCTTCAAGCAGACCCAGCTGGATGGTGGGCTCGTGCTGTTCTCACACAGAGGTGGGTGCTGAGGGCCGAGCCCC-AGGTTTCTGCTGCCCACGGGGGCACCCTGAGG-TG-GGGAGCCAGTTCAGGCCAGCTGGACCCAA-------CAC------CCTTGTCCCCAGGGGCCCTGGACGGAGGCATCCACTTTGGCCTCTCTGACGGTGAACATACTTCCTCCAGACACTTAGCTTCT---GAGTGACGGCCCAGAAGCAAGTGCTTCACTCGCTGGAGGGCAGCCGGACACT----GACTGCCC----AGGTGGGTGTGCTGATTGTGGGCGTTCCTGG--GTGCGGG-GGGCTGGGGCAGAGCTGAGGGTGGCATGCCAGG---GTCACACTGCCTCTCTGCAGCCACA-GGCCTCGGCCTGGATCA----CAAAGGCTGAT-GGCCCCTTTTGCCTCTGGCAGAGTCCGTCCAGCCACTCAGCAGCCAGAGCCTCAGAGCCA--------GCAGGCACCGACCCCCAGCTCCTGCTC-TACCATGTGGTGCGGGGCCTCCAGCTAGGCCGGCTCTTCCACGCCCAGCATGACAGCACAGGGGAGGACCTGGTGAACTTCACTCAGGCAGAGGTAAGGGCCCCACTCTGCAGCCACCACTCAGATGCG--CCCAGCCTC
s gorGor5.CYUI01015946v1       356747 941 +    378907 TGCA-GGGAGG-CCATTGGTGCAGGGGAG-CCACAGCAGCGCCAGCCTTGATGCCACCTGAGGGCCTGAGCC-TCAGTG-GGGTTGGAGCCCTGGTGGCAGCCCAGGGCCGGGGAGGAA-GGGGTGGGTAAGTGTGGC-A------GGG-CAGAACCTTCACAGGCCTGTGTCCCCAGATGTGGGAGGGG-CCACTGTGCCCATCCCTACAGAGGCTCTGAGGAGCATGGATGGTTACTCTGGGCCC--AAGGACCTGGTGTACACCATTAAGCAGCCCAGCAATGGGTGGGTAGTGTGGTGGGCGGTGCCAGGCACTGAGGTGCGCAGCTTCATGCAGACCCAGCTGGATGGCGGGCTCGTGCTCTTCTCACACAGAGGTGGGTGCTGAGGGCCGAGCCCC-AGGTTTCTGCTGCCCACAGGGGCACCCTGAGG-TG-GGGAGCCAACTCAGGCCAGCTGGACCCAA-------CAC------CCTTGTCCCCAGGAGCCCTGGACGGAGGCATCCACTTTGG--TCTCTGACGGTGAACATACTTCCTCCAGACACTTAGCTTCT---GAGTGACGGCCCAGAAGCAAGTGCTTCACTCGCTGGAGGGCAGCCGGACACT----GACTGCCC----AGGTGGGTTTGCTGATTGTGGGCGTTCCTGG--GTGCGGG-GGGCTGGGGCAGAGCTGAGGGTGGCATGCCAGG---GTCACACTGCCTCTCTGCAGCCACA-GGCCTCGGCCTGGATCA----CAAAGGCTGAT-GGCCCCTTTTGCCTCTGGCAGAGTCCGTCCAGCCACTCAGCAGCCAGAGCCTCAGAGCCA--------GCAGGCACCAACCCCCAGCTCCTGCTC-TACCATGTGGTGCGGGGCCTCCAGCTAGGCCGGCTCTTCCACGCCCAGCATGACAGCACAGGGGAGGACCTGGTGAACTTCACTCAGGCAGAGGTAAGGGCCCCACTCTGCAGCCACCACTCAGATGCG--TCCAGCCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62602567 927 + 169600520 TGCG-GGGAGGTCCTTTTGTGCAGGGGAG-CCAGAGCAGTGCCAGACTCGATGCCACCTGAGGGCCTGAGCT-GCAG-------------------GGCAGCCTAGGGCCGGGGAGGAA-GGGGTGGGTGAGTGTGGC-A------GGG-CAGAACCTTCACAGGCCTGTGTCCCCAGATGTGGGAGGAGGCCACTGTTCCCATCCCAACAGAGGCTCTGAGGAGCATGGATGGTTACTCTGGGCCC--AAGGACCTGGTCTGGACCATTGAGCAGCCCAGCAATGGGCGGGTAGTGCTGTGGGCGGTGCCAGGCACCGAGGTGTGCAGCTTCACGCAGGCCCAGCTGGACGGCAGGCTTGTGCTGTTCTCACACAGAGGTGGGCGCTGAGGGCCAAGCCCC-GGGTTCCTGCTGCCCGCAGGAGCACCCCGAGG-TG-GGGAGCCAGCTCAGGTCAGTCAGACCCAA-------TGC------CCCTGTCGCCAGAAGCCCTGGACGGAGGCATCCACTTTGGCCTCTCTGACGGTGAGCACACTTCCTCTAGACA-----CTTCT---GAGTGACGGCCCAGAAGCAAGTGCTCCTCTCGCTGGAGGGCAGCCGGACACT----GTCTGTCT----TGGTGGGTGTGCTGATTGTGGGCATTCCTGG--GTGCTGG-GGGCTAGGGCAGAGCTGAGAGTGGCATGCCAGG---GTCACGCTGCCTCTCTGCAGCCACA-GGCCTGGGCCTGGATCA----CAAAGGCTGAT-GGCCCCTTTTGCCTCTGGCAGGGTCCGTCCAGCCACTCAGCAGCCAGAGCCTCAGAGCCAGCTCCAGTGCAGGCACCAACCTCCAGCTTCTGCTCTT----TGTGGTGCGGGGCCCCCAGCTAGGTCGGCTCTTCCATGCCCAGCATGACAGCACAGGGGAGGACCTGGTGAACTTCACTCAGCCAGAGGTAAGGGCCCCACTCTGCAGCCACCGCTCAGATGCC--CCCAGCCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106522964 927 - 171882078 TGCG-GGGAGGTCCTTTTGTGCAGGGGAG-CCAGAGCAGTGCCAGACTCGATGCCACCTGAGGGCCTGAGCT-GCAG-------------------GGCAGCCTAGGGCCGGGGAGGAA-GGGGTGGGTGAGTGTGGC-A------GGG-CAGAACCTTCACAGGCCTGTGTCCCCAGATGTGGGAGGGGGCCACTGTTCCCATCCCAACAGAGGCTCTGAGGAGCATGGATGGTTACTCTGGGCCC--AAGGACCTGGTCTGGACCATTGAGCAGCCCAGCAATGGGCGGGTAGTGCTGTGGGCGGTGCCAGGCACCGAGGTGTGCAGCTTCACGCAGGCCCAGCTGGACGGCAGGCTTGTGCTGTTCTCACACAGAGATGGGCGCTGAGGGCCAAGCCCC-GGGTTCCTGGTGCCCGCAGGAGCACCCCGAGG-TG-GGGAGCCAGCTCAGGTCAGTCAGACCCAA-------TGC------CCCTGTCGCCAGAAGCCCTGGACGGAGGCATCCACTTTGGCCTCTCTGACGGTGAGCACACTTCCTCTAGACA-----CTTCT---GAGTGACGGCCCAGAAGCAAGTGCTCCTCTCGCTGGAGGGCAGCCGGACACT----GTCTGTCT----TGGTGGGTGTGCTGATTGTGGGCATTCCTGG--GTGCTGG-GGGCTAGGGCAGAGCTGAGAGTGGGATGCCAGG---GTCACGCTGCCTCTCTGCAGCCACA-GGCCTGGGCCTGGATCA----CAAAGGCTGAT-GGCCCCTTTTGCCTCTGGCAGGGTCCGTCCAGCCACTCAGCAGCCAGAGCCTCAGAGCCAGCTCCAGTGCAGGCACCAACCTCCAGCTTCTGCTCTT----TGTGGTGCGGGGCCCCCAGCTAGGTCGGCTCTTCCATGCCCAGCATGACAGCACAGGGGAGGACCTGGTGAACTTCACTCAGCCAGAGGTAAGGGCCCCACTCTGCAGCCACCGCTCAGATGCC--CCCAGCCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6256833 931 -   6271500 TGCG-GGGAGGTCCTTTTGTGCAGGGGAG-CCAGAGCAGAGCCAAACTCGATGCCACTTGAGGACCTGAGCT-gcag-------------------ggcagcctagggccggggaggaa-ggggtgggtgagcatggc-a------ggg-cagAACCTTCACAGGCCTGTGTCCCCACATGTGGGAGGAGGCCACTGTGCCCATCCCAACAGAGGCTCTGAGGAGCATGGATGGTTACTCTGGGCCC--AAGGACCTGGTCTAGACCATTGAGCAGCCCAGCAATGGGCGGGTAGTGCTGTGGGCGGTGCCAGGCACCGAGGTGTGCAGCTTCACGCAGGCCCAGCTGGACGGCAGGCTTGTGCTGTTCTCACACAGAGGTGGGTGCTGAGGGCCAAGCCCC-GGGTTCCTGCTGCCCACAGGAGCACCCCGAGG-TG-GGGAGCCAGCTCAGGTCAGTCAGACGCAA-------TGC------CCCTGTCGCCAGAAGCCCTGGACGGAGGCATCCACTTTGGCCTCTCTGACGGTGAGCACACTTCCTCTAGACA-----CTTCT---GAGTGACGGCCCAGAAGCAAGTGCTCCTCTCGCTGGAGGGCAGCCGGACGCT----GTCTGTCT----TGGTTGGTGTGCTGATTGTGGGCATTCCTGG--GTGCTGG-GGGCTAGGGCAGAGCTGAGAGTGGGATGCCAGG---GTCACGCTGCCTCTCTGCAGCCACA-GGCCTGGGCCTGGATCA----CAAAGGCTGAT-GGCCCCTTTTGCCTCTGGCAGGGTCCGTCCAGCCACTCAGCAGCCAGAGCCTCAGAGCCAGCTCCAGTGCAGGCACCAACCTCCAGCTTCTGCTCTTACTGTGTGGTGCGGGGCCCCCAGCTAGGTCGGCTCTTCCATGCCTAGCATGACAGCACAGGGGAGGACCTGGTGAACTTCACTCAGCCAGAGGTAAGGGCCCCACTCTGCAGCCACCGCTCAGATGCC--CCCAGCCTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5149652 931 +   5160157 TGCG-GGGAGGTCCTTTTGTGCAGGGGAG-CCAGAGCAGAGCCAAACTCGATGCCACTTGAGGGCCTGAGCT-gcag-------------------ggcagcctagggccggggaggaa-ggggtgggtgagcgtggc-a------ggg-cagAACCTTCACAGGCCTGTGTCCCCAGATGTGGGAGGAGGCCACTGTGCCCATCCCAACAGAGGCTCTGAGGAGCATGGATGGTTACTCTGGGCCC--AAGGACCTGGTCTAGACCATTGAGCAGCCCAGCAATGGGCGGGTAGTGCTGTGGGCGGTGCCAGGCACCGAGGTGGGCACCTTCACGCAGGCCCAGCTGGACGGTAGGCTTGTGCTGTTCTCACACAGAGGTGGGTGCTGAGGGCCAAGCCCC-GGGTTCCTGCTGCCCGCAGGAGCACCCCGAGG-TG-GGGAGCCAGCTCAGGTCAGTCAGACCCAA-------TGC------CCCTGTCGCCAGAAGCCCTGGACGGAGGCATCCACTTTGGCCTCTCTGACGGTGAGCACACTTCCTCTAGACA-----CTTCT---GAGTGACGGCCCAGAAGCAAGTGCTCCTCTCGCTGGAGGGCAGCCGGACACT----GTCTGTCT----TGGTGGGTGTGCTGATTGTGGGCATTCCTGG--GTGCTGG-GGGCTAGGGCAGAGCTGAGAGTGGCATGCCAGG---GTCACGCTGCCTCTCTGCAGCCACA-GGCCTGGGCCTGGATCA----CAAAGGCTGAT-GGCCCCTTTTGCCTCTGGCAGGGTCCGTCCAGCCACTCAGCAGCCAGAGCCTCAGAGCCAGCTCCAGTGCAGGCACCAACCTCCAGCTTCTGCTCTTAATGTGTGATGCGGGGCCCCCAGCTAGGTCGGCTCTTCCATGCCCAGCATGACAGCACAGGGGAGGACCTGGTGAACTTCACTCAGCCAGAGGTAAGGGCCCCACTCTGCAGCCACCGCTCAGATGCC--CCCAGCCTC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7720055 957 +  58131712 TGTG-GGGAGGGCCCTTTGTGCAGGGGAG-CCAGAGCAGTACCAGCCTCGATGCCACCTGAGGGCCTGAGCCAGCAG----AGTTGGAACCCTGGTggcagcccagggctggggaggaa-ggggtgggtgagcagggc-a------agg-cagAACCTTCACAGGCCTGTGTCCCCAGATGTGGGAGGGGGCCACTGCGCCCATCCCTGCGGAGGCCCTGAGGAGCATGGACAGTTACTCTGGGCCCCTGAGCATCTGGTTTACGCCATTGAGCAGCCCAGCAAAGGGCGGATAGTGCTGTGGGCAGCGCCGGGCACCGAGGTGCACAGCTTCGTGCAGGCCCAGCTGGACGGCAGGCTCGTGCTGTTCTCACACAGAGGTGGGTGCTGAGGGCCGGGCCCT-GGGTTCCTGCTGCCTGAAGAGGTGCCCTGAGA-TG-AGGAGCCAGCTCAGGCCAGCCAGACCCAA-------TGA------CTCTGTCCTCAGGAGCCCTGGACGGAGGCATCCACTTCAGCTTCTCTGATGACAAGCACACTTCCTCCAGACA-----CTTCTTCCGAGTGGCGGCCCAGAAGCAAGTGCTCCTCTCACTGGAGGGCAGCCAGACGCT----GACTGTCTGCCCGGATGGGTGTGCTGATTGTGGGCATTCCGGGGTGTGCCAG-GAGCTGGGGCAGAGCTGAGGGTGGTGTGCCAGG---GTCACACTGCCTCTCTGCAGACACA-GGCCTGGGCCTGGATCT----CAGAGGATGAT-GGCCCCTTTTGCATCTGGAAGGGTCCGTCCAGCCACTCAGCAACCAGAGCCTCAGAGccagctccagcgcaggcaccgacccccagctcctgctc-TACGGTGTGGTCCTGGGCCTCCAGCTAGGCCAGCTGTTCCACGCCTAGCAGGACAGCACAGGGGAGGCCCTGGTGAACTTCATTCAGGCAGAGGTAAGGTCCCCACTCTGCAGCCACCACTCAGACACC--CCCAGCCTC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1107542 931 +   1458659 TGCG-GGGAGGTCCTTTTGTGCAGGGGAG-CCAGAGCAGAGCCAAACTCGATGCCACCTGAGGGCCTGAGCT-gcag-------------------ggcagcctagggccggggaggaa-ggggtgggtgaacatggc-a------ggg-cagAACCTTCACAGGCCTGTGTCCCCAGATGTGGGAGGAGGCCACTGTGCCCATCCCAACAGAGGCTCTGAGGAGCATGGATGGTTACTCTGGGCCC--AAGGACCTGGTCTAGACCATTGAGCAGCCCAGCAATGGGCGGGTAGTGCTGTGGGCGGTGCCAGGCACCGAGGTGGGCAGCTTCACGCAGGCCCAGCTGGACGGCAGGCTTGTGCTGTTCTCACACAGAGGTGGGCGCTGAGGGCCAAGCCCC-GGGTTCCTGCTGCCCGCAGGAGCACCCCGAGG-TG-GGGAGCCAGCTCAGGTCAGTCAGACCCAA-------TGC------CCCTGTCGCCAGAAGCCCTGGACGGAGGCATCCACTTTGGCCTCTCTGACGGTGAGCACACTTCCTCTAGACA-----CTTCT---GAGTGATGGCCCAGAAGCAAGTGCTCCTCTCGCTGGAGGGCAGCTGGACGCT----GTCTGTCT----TGGTGGGTGTGCTGATTGTGGGCATTCCTGG--GTGCTGG-GGGCTAGGGCAGAGCTGAGAGTGGCATGCCAGG---GTCACGCTGCCTCTCTGCAGCCACA-GGCCTGGGCCTGGATCA----CAAAGGCTGAT-GGCCCCTTTTGCCTCTGGCAGGGTCTGTCCAGCCACTCAGCATCCAGAGCCTCAGAGCCAGCTCCAGTGCAGGCACCAACCTCCAGCTTCTGCTCTTAATGTGTGGTGCGGGGCCCCCAACTAGGTCGGCTCTTCCATGCCCAGCATGACAGCACAGGGGAGGACCTGGTGAACTTCACTCAGCCAGAGGTAAGGGCCCCACTCTGCAGCCACCGCTCAGATGCC--CCCAGCCTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       318034 929 +   4111199 TGTG-GAGAGGTCCTTTTGTGCAGGGGAG-CCAGAGCAGCGCCAGACTCGATGCCACCTGAGGGCCTGAGCT-TCAG-------------------GGCAGCCTAGGGCCGGGGAGGAA-GGGGTGGGTGAGCGTGGC-A------GGG-CAGAACCTTCACAGGCCTGTGTCCCCAGATGTCAGAGGGGGCCACTGTGCCCATCCCAACAGAGGCTCTGAGGAGCATGGATGGTTACTCTGGGTCC--AAGGACCTGGTCTAGACCATTGAGCAGCCCAGCAATGGGTGGGTAGTGCTGTGGGTGGTGCCAGGCACCGAGGTGTGCAGCTTCACGCAGGCCCAGCTGGACGGCAGGCTTGTGCTGTTCTCACACAAAGGTGGGTGCTGAGGGCCAAACCTC-GGGTTCCTGGTGCCTGCAGGAGCACCCCGAGG-TG-GGGAGCCAGCTCAGGTCAGTCAGACCCAA-------TGC------CCCTGTCGCCAGAAGCCCTGGACGGAGGCATCCACTTTGGCCTCTCTGACGGTGAGCACACTTCCTCTAGACA-----CTTCT---GAGTGACGGCCCAGAAGCAAGTGCTCCTCTCGCTGGAGGGCAGCCAGACACT----GTCTGTCT----TAGTGGGTGTGCTGATTGTGGGCATTCCTGG--GTG-TGG-GGGCTAGGGCAGAGCTGAGAGTGGCATGCCAGG---GTCACGCTGCCTCTCTGCAGCCACA-GGCCTGGGCCTGGATCA----CAAAGGCTGAT-GGCCCCTTTTGCCTCTGGCAGGGTCCGTCCAGCCACTCAGCAGCCAGAGCCTCAGAGCCAGCTCCAGTGCAGGCACCAACCTCCAGCTTCTGCTCTTACTGTGTGGTGCGGGGTCCCCAGCTAGGTCGGCTCTTCCATACGCAGCATGACAGCACAGGGGAGGACCTGGTGAACTTCACTCAACCAGA-GTAAGGGCCCCACTCTGCAGCCACCGCTCAGATGCC--CCCAGCCTC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114237193 948 - 132174527 TGCA-AGGAGGGCCCTTTGTGCAGGGGAG-CCAGAGCGGTGCCAGCCTCGATGC---CTGAGG-CCTGAGCT-GCAGTG-GGGTTGGAGCCCTGGTGGCCATGCA-GGCCGGGGAGGAA-GGGGTGGGTGAGCGTGGC-A------GGG-CAGGACCTTCACAGGCCTGTGTCCCCAGATGTGGGAGGGGACCACGGCACCTATCCCTGCGGAGGCTCTGAGGGGCACTGACGGCGACTCCAGGCCT--GAGGACCTGGTCTACACCATCGAGCAGCCCAGCAACGGGCGGGTGGTGCTGCGGGCGGCGCCGGGCACTGAGGTGCGCAGCTTCACACAGGCCCAGTTGGATGGCGGGCTCGTGCTGTTCTCACACAGAGGTAGGTCCTGAGGGCCTGGCCCC-GGGTTCCTGCTGCCC-CTGGGGAGCCCCGAGG-TG-GGGAGCCAGCTCCGGCCAG-TGGACTCAA-------TGC------CCCCATCCCCAGGAGCCCTGGACGGAGGCTTCCGCTTCAGCCTCTCTGACGGCGAGCACGCTTCCTCCGGACA-----CTTCTTCCGAGTGACAGCCCAGAAGCAGGTGCTCCTCTCGCTGGAGGGCAGCCGGACACTGACCATCTGCCC----AGGTGCGTGTGCTGGCCATGGGCATTCCTGG--TTGCTGG-GAGCCCGGGAGGAGCTGAAGGTTGCACGCCAGG---GTGACACTGCCTCCCTGCAGCCACA-GGCCTGGGCCTGGATCC----CAAAGGCTGAT-GGTCTCTTTTGCTTCTGACAGGGTCCGTGCAGCCACTCAGCAGCCAGAGCCTCAGAGCCAGCTCCAGCGCTGGGGCCGACCCCCAGTTCCTGCTC-TACCGTGTGGTGCAGGGCCCCCAGCTGGGCCGACTGTTCCACGCCCAGCAGGACAGCGTGGGAGAGGCCCTGGTGAACTTCACTCAGGCAGAGGTAAGGGCCCCACTCTGTAGCCACCACTCAGACACC--TCCAGCCTC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2892014 898 +   3282555 TTCG-GGGAGGGCCCTTTGTGCAGGGGAG-CCGGAGCGGTGCCAGCCT-------------------------------------------------------CA-GGCTGGGGATGAG-GGGGTGGGTGAGCGTGGC-A------GGG-CAGAACCGTCACAGGCCCGTGTCCCCAGATGTGGGAGGGGGCCACGGCGCCCATCCCTGCGGAGGCTCTGAGGAGCACAGACGGCGACTCCGGGCCT--GAGGACCTGGTCTACACCATCGAGCAGCCCAGCAACGGGCAGGTGGCGCTGCGGGCGGCGCCGGGCACCGAGGTGCGCAGCTTCACACAGGCCCAGCTGGACGGCGGGCTCGTGCTGTTCTCACACAGAGGTGGGTGCTGAGGG-CGGGCCCC-GGGTTCCTGCTGCCCACGGGGGAGCCCCAGGG-TG-GGGAGCCAGCTCGGGCCAG-CGGACCCAA-------TGC------CCCCGTCCCCAGGAGCCCTGGACGGAGGCTTCCGCTTCGGCCTCCCTGACGGCGAGCACGCTTCCTCCGGACA-----CTTCTTCCGAGTGACAGCCCAGAAGCAGGTGCTCCTCTCGCTGGAGGGCAGCCGGACCCTCACCGTCTGCCC----AGGTGCGTGTGCTGACCCTGGGT-TTCCTGG--CTGCTGG-GAGCCCGGGAGGAGCTGAAGGTCGCATGCCAGG---GTGACGCTGCCTCTCTGCAGCCACA-GGCCTGGGTCTGGGTCC----CAAAGGCTGAT-GGTCTCTTCTGCCTCCGGCAGGGTCCGTGCAGCCACTCAGCAGCCAGAGCCTCAGAGCCAGCTCCAGCGCCGGGACCGAGCCCCAGCTCCTGCTC-TACCGTGTGCTGCGGGGCCCCCAGCTGGGCCGGCTGTTCCACGCCCAGCAGGACAGCGTGGGAGAGGCCCTGGTGAACTTCACTCAGGCAGAGGTAAGGGCCCCACTCTGCAGCCACCACTCAGACGCC--TCCAGCCTC
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       844406 952 +   1024465 TGCG-GGGAGAGCCCTTTGTGCAGGGGAG-CCAGAGCGGCGCCAGCCTCAATGCCAGCTGAGG-CCTGAGCT-GCAGTG-GGGTTGGAGCCCTGGTGGCCGCCCA-GGCCGGGGACGAA-GGGGTGGGTGAGCGTGGC-A------GGG-CAGGACCTTCACAGGCCCGTGTCCCCAGATGTGGGAGGGGGCCACGGCGCCCATCCCTGCGGAGGCTCTGAGGAGCACGGACGGCGACTCCGGGCCA--GAGGACCTGGTCTACACCATCGAGCAGCCCAGCAACGGGCGGGTAGCGCTGCGGGCGGCGCCGGGCACCGAGGTGCGCAGCTTCACGCAGGCCCAGCTGGACGGCGGGCTCGTGCTGTTCTCACACAGAGGTGGGTGCTGAGGGCCGGTCCCC-GGGTTCCTGCTGCCCACGGGGGAGCCCTGAGG-CG-GGGAGCCAGCTCGGGCCAG-CGGACCCAA-------TGT------CCCCGTCCCCAGGAGCCCTGGACGGAGGCTTCCGCTTCGGCCTCTCTGACGGCGAGCACGCTTCCTCCGGACA-----CTTCTTCCGAGTGACAGCCCAGAAGCAGGTGCTCCTCTCGCTGGAGGGCAGCCGGACCCTCACCGTCTGCCC----AGGTGCGTGTGCTGACTGTGGGCGTTCCTGG--TTGCTGG-GAGCCCGGGAGGAGCTGAAGGTCGCACGCCAGT---GTGACGCTGCCTCTCTGCAGCCACA-GGCCTGGGCCTGGATCC----CAAAGGCTGAT-GGTGTCTTTTGCCTCCGGCAGGGTCCGTGCAGCCACTcagcagccagagcctcagagccagctccagcgccggcgccgacccccagctcctgcTC-TACCGTGTGGTGCGGGGCCCCCAGCTGGGCCGGCTGTTCCATGCCCAGCAGGACAGCATGGGAGAGACCCTGGTGAACTTCACTCAGGCAGAGGTAAGGGCCCCACTCTGCAGCCACCACTCAGACGCC--TCCAGCCTC
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2764213 952 -   3745603 TTCG-GGGAGGGACCTTTGTGCAGGGGAG-CCAGAGCGGCGCCAGCCTCGATGCCAGCTGAGG-CCTGAGCT-GCAGTG-GGGTTGGAGCCCTGGTGGCCACCCA-GGACGGGAAGGAA-GGGGTGAGTGAGTGTGGC-A------GGG-CAGGACCTTCACAGGCCCGTGTTCCCAGATGTGGGAGGGGGCCACGGCGCCCATCCCTGCGGAGGCTCTGAGGAGCACGGACGGCGACTCCGGGCCT--GAGGACCTGGTCTACACCATCGAGCAGCCCAGCAATGGGCGGGTAGTGCTGCGGGCGGCGCCGGGCACCGAGGTGCGCAGCTTCACGCAGGCCCAGCTGGACGGCGGGCTCGTGCTGTTCTCACACAGAGGTGGGTGCTGAGGGCCGGGCCCC-GGGTTCCTGCTGCCCACAGGGGAGCCCCGAGG-TG-GGGAGCCAGCTCGGGCCAG-AAGACCCAA-------TGC------CCTCGTCCCCAGGAGCCCTGGATGGAGGCTTCCGCTTCGGCCTCTCTGATGGTGAGCACGCTTCCTCTGGACA-----CTTCTTCCGAGTGACAGCCCAGAAGCAGGTGCTCCTCTCGCTGGAGGGCAGCCGGACACTCACCGTCTGCCC----AGGTGTGTGTGCTGACCGTGGGTATTCCTGG--TTGCTGG-GAGCCCGGGAGGAGCTGAAGTTTGCACGCCAGG---GTGACGCTGCCTCTCTGCAGCCACA-GGCCTGGGCCTTGATCC----CAAAGGCTGAT-GGTTTCTTTTGCCTCTGACAGGGTCTGTGCAGCCACTcagcagccagagcctcagagccagctccagcgccggggccaacccccagctcctgctc-TACCGTGTGGTACGGGGCCCCCAGCTGGGCCGGCTGTTCCACGCCCAGCAGGACAGCGTGGGAGAGGCCCTGGTGACCTTCACTCAGGCAGAGGTAAGGGCCCCACTCTGCAGCCACCACTCAGATGCC--TCCAGCCTC
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8737209 922 -  36342412 ---------------TTAGTACAGGGGAGCCCAGACTGGCCCTGGCCTCGGTGCTGGTTGAATGCCTGAGCC-ACAGTA-GGGTTGG-GCCCTGATGGAGGCCCTAGACCAGGGAGGAAGGGGGTGGGTAAATATCATGG------GGG-CAGAACCTTCACA-GCCTGTGTCCCTAGATGTGGGAGGGGGCCACTGTCCCCATACCCAAAGAAGCCCTTGGGAGCACAGACGGCGACTCTGGGCCT--GAGGACCTGGTCTACACCATTGAGCAGCCCAGCAACGGGCGGGTAGTTTTACGGGCGGCACCAAGCACCGAGATCCACAGCTTCACACAGGCCCAGCTGGATGGCAGTCTCGTGCTTTTCTCTCACAGAGGTGGGTACTGAGAGGTGGACCCCTGGGTTCCTGTGGCCCCTGGAGTTGCCCTAAGGATG-GGGAGCTCTCTTTGACCAGGGGGACCCAACTCTGCCTGC------CTCCATCCTCAGGAGCCCTGGACGGAGGCTTCCAATTCAGCCTCTCTGACGGCAAACACCTTTCCCCTGGACA-----CTTCTTCCAAGTGATGGCCCAGAAGCAGGTGTTCCTCTCGCTGGAGGGCAGCCGGACACTGCTTGTCTGCCC----AGGTGGGTCTGCAAA------GCATGCCAGG--G-----------------------------AGCACCCCAGG---ATCAAACTGCCTCTCTGCAGTTGTA-CCCCGTGCCCTGGCTGCTGGTCACTGGCTGACAGGCCCCTTTTGCCTCTTGCAGGGTCTGTCCAGGTGCTCAGCAGCGAGAGCCTGAGAGCCAGCTCCAGTGCAGGCACTGACCCCCACCACCTGCAC-TACCACGTGGTGCGGGGCCCCCAGCTGGGACGGCTGTTGCATGCCCAGCAGGATAGCACAGAGAAGGCCCTGGTGAACTTCACTCAGGCTGAGGTAAGGGCCCAACTCTGTGGCCATCACTCTAACTCC--CTCCAGCTC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56892172 896 + 124595110 TGAG-AA---------------AGAAGGC-TCAGAATGGCACAGGTGTCCATGACAGCCGG------------GCAGAGCAGGTTGGGGGCCTGGTGAAAGTCCAAGGGCCAGGAGGAA-AGGGATGGAAAG---GAC-ACAATGTGGA-CAGGACTTTCAC-GGTCTGTGTCCCTAGATCTGGGAGGGGGCCATTGTGCCCATCCCTCCTGAGGCCCTCAGGGGAACAGACAATGATTCGGGCCCA--GAAGACTTGGTCTACACCATCGAGCAGCCCAGCAACGGACGGATCGCCTTGAGGGTGGCACCAGACACCGAGGTCCACCGCTTCACACAGGCCCAGCTGGACAGTGGGCTTGTGCTGTTCTCACACAGAGGTGGGTGCTGAGAG-GGTTCTCC-AGCCTCCTGGGG----TGGGGGTACCTTGAGG-GGAGGGAGCTACCTTGGGCCAACAGGACCCAG-------CTCCACCCACCCTGTGCTCAGGAGCCCTGGAAGGAGGCTTCCACTTCGACCTCTCTGACGGCGCACACACTTCTCCTGGACA-----TTTCTTCCGAGTGGTGGCCCAGAAGCAGGCACTCCTCTCCTTGGAGGGCACCCGGAAGTTGACCGTCTGTCC----AGGTAGGTCTGC---------------------ATGCTGGCTAGCCGAGGCAGAATGGAGGATGGTAGCCCAGG---ACC--------------------CT-TGTCTGGGCTCCTGT------CAAAAGCTAAC-AGGCTCCTCCATGCTTCACAGAGTCTGTGCAGCCGCTCAGCAGCCAGAGCCTGAGCGCCAGTTCCAGCACAGGCGCTGACCCTCGTCACCTGCTC-TACCGGGTGGTAAGAGGCCCCCAGCTTGGCCGACTCCTCCATGCCCAGCAAGGAAGTGCAGAGGAGGTCTTGGTGAACTTCACCCAGGCTGAGGTAAGGGCCTCACTCCTCAGCCACCACACAGACCCCAACCTTACCTC
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1742289 875 -  40214260 TGGGCTGGAGGGGCCCTTGGGAGGGGGAGCCCAGGAGGACGCGGGCCTCGGTGACCGCCCAAGGCCTGAGCT-G--------------------------------AGCCAGT-------GGGAGTGCTCCGCTCGGC-G------GGGACGGAACCCTCACGGGCCTGTGTCCCCAGATGTGGGAGGGGGCCACCGTGCCCTTCCCTCCGGAGGCCCTGAGGGGTGCGGACAGCGACTCGGGCCCG--GAGGACCTGGTCTACACCATCGAGCGGCCCAGCAACGGGCAGGTGGTGCTGCGGGCGGCGCCAGGCACCGAGGTGCACAGCTTCACGCAGGCCCAGCTGGACGACGGGCTCGTGCTGTTCTCACACAGAGGTGGGTACCG-----------CC-GG--------------CTGGGGCGCCTGCGGA-CG-GGGA-CCCGCGGGGGCCAGCGAGACCCAC-----TCTAC------GCCCGTCCTCAGGAGCCCTGGACGGAGGCTTCCGCTTCAGCCTGTCCGACGGCGAGCACGCTTCCCCCGGACA-----CTTCTTCCGCGTGACGGCCCAGAAGCAGCTGCTCCTCTCCCTGGAGGGCAGCCGGACGCTGACCGTGTGCCC----AGGTGGGTCCGCC--CGGCGCGCTTGCCTCG--T-------GGGCCCGGG------------------GCCCGGCCCGTCACGCTGC--CCCCGCAGGCGCACGGCCTCGCCCTGCCTCCTGGTCCGAGGCCAGCGGGGCCCTGATGTGTCTCGCAGGGTCGGTCCAGCCGCTCAGCAGCCAGAGCCTGAGAGCCAGCTCCAGTGCCGGCACCGATCCGCAGCACCTGCTC-TACCGGGTGGTGCAGGGCCCCCGGCTGGGCCGCCTGCTCCGCGCCCAGCAGGGCGGCACCGGGGAGGTCCTGGTGAACTTCACGCAAGCCGAGGTAGGGCCCCACCTCTACAGCCGCCACT---AGACT--CCCTGCGTC
i canFam3.chr30             C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=2884448.000000
s hg38.chr15_KI270850v1_alt    259130 436 +    430880 AGGTGGCC----ACTGTGCC-ATGGACAT-CATGTGGACA-----TGGGCACCAGCTCCAGCATCACCGGCAGCAGACACTCCCAGGCCTGCCATGGTCCAGGACCTGGTGTCCTGCCCTCTAGGAGTCATCAGGCTGGCAGGGCAAGTTCATGTTCCCAG-AAGGAGGGAGAAGAATGCAGGAAGTCGGGGATACAGGGCCCCAGAGCAGGGCTGGGGTCTTGGGGTGTGGCTTCCCGAAGGAAGCTAGAGCTGGACCCAAGGGTCTGGAGAGGGAGAACCATGTAGGGGC-ACTAGTGGCACCCCAGCAGC-TGGT---GAGGGGCAGTGCTTGGT---GGGGGATGGAGTCGGAGGTGAAGCAGCTGCTGGGGCCTGTGGGCAGAGGTGTGAGCCTCGGGCTCAGA-TCA-GGTGCCAGCCAG---AGGAAGAGTGGATCCTAGGAGCAGATGAGCTG
s gorGor5.CYUI01015946v1       357688 436 +    378907 AGGTGGCC----ACTGTGCC-ATGGACAT-CATGTGGACA-----TGGGCACCAGCTCCAGCATCACTGGCAGCAGACACTCCCAGGCCTGCCATGGTCCAGGACCTGGTGTCCTGCCCTCTAGGAGTCATCAGGCTGGCAGGGCAAGTTCATGTTCCCAG-AAGGAGGGAGAAGAATGCAGGAAGTCGGGGATACAGGGCCCTAGAGCAGGGCTGGGGTCTTGGGGTGTGGCTTCCCGAAGGAAGCTAGAGCTGGACCCGAGGGTCTGGAGAGGGAGAACCATGTAGGGGC-ACTAGTGGCACCCCAGTAGC-TGGT---GAGGGGCAGTGCTTGGT---GGGGGATGGAGTCGGAGGTGAAGCAGCTGCTGGGGCCTGTGGGCAGAGGTGTGAGCCTCGGGCTCAGA-TCA-GGTGCCAGCCAG---AGGCAGAGTGGATCCTAGGAGCAGATGAGCTG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62603494 435 + 169600520 AGGTGGCC----GCTGTGCC-ATGGACAT-CATGTGGACA-----TGGGCACCAGCTCCAGCATCACTGTCAGCAGACACTGCCAGGCCTACCATGGTCCAGGCCCTGGTGTCCTGCCCTACAGGAGCTATCTGGCTGGCAGGGCAAGTTCATCTTCCCAG-AATGAGGGAGAAGGATGCGGGAAGTTGGGGATACAGGGCCCTAGAGCAGGGCTGGGGTCTTGGGGTGTGGCTTCCAAAAGGAAGCTACAGCTGGACCCGAGGGTCTGGAGAGGGAGCACCATGTAGGGGT-ACTAGTGGCACCCAAGTAGC-TGGT---GAGCGGCAGTGCTTGGT---GGAGGAGGGAGTTGAAGGTGAAGCAGCTGCT-GGGCCTGTGGGCAGAGGTGTGAGCCTGGGATTCAGA-TCA-GGTGCCAGCCAG---AGGCAGAGTGGATCCTAGGAGCAGATGAGCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106523891 435 - 171882078 AGGTGGCC----GCTGTGCC-ATGGACAT-CATGTGGACA-----TGGGCACCAGCTCCAGCATCACTGTCAGCAGACACTGCTGGCCCTACCATGGTCCAGGCCCTGGTGTCCTGCCCTACAGGAGCTATCTGGCTGGCAGGGCAAGTTCATCTTCCCAG-AATGAGGGAGAAGGATGCAGGAAGTTGGGGATACAGGGCCCTAGAGCAGGGCTGGGGTCTTGGGGTGTGGCTTCCAAAAGGAAGCTACAGCTGGACCCGAGGGTCTGGAGAGGGAGCACCATGTAGGGGT-ACTAGTGGCACCCCAGTAGC-TGGT---GAGCGGCAGTGCTTGGT---GGAGGAGGGAGTTGAAGGTGAAGCAGCTGCT-GGGCCTGTGGGCAGAGGTGTGAGCCTGGGATTCAGA-TCA-GGTGCCAGCCAG---AGGCAGAGTGGATCCTAGGAGCAGATGAGCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6257764 435 -   6271500 AGGTGGCC----GCTGTGCC-ATGGACGT-CATGTGGACA-----TGGGCACCAGCTCCAGCATCACTGTCAGCAGACACTGCCAGGCCTACCATGGTCCAGGCCCTGGTGTCCTGCCCTACAGGAGCTATCTGGCTGGCAGGGCAAGTTCATCTTCCCAG-AATGAGGGAGAAGGATGCGGGAAGTTGGGGATACAGGGCCCTAGAGCAGGGCTGGGGTCTTGGGGTGTGTCTTCCAAAAGGAAGCTACAGCTGGACCCGAGGGTCTGGAGAGGGAGCACCATGTAGGGGT-ACTAGTGGCACCCCAGTAGC-TGGT---GAGCGGCAGTGCTTGGT---GGAGGAGGGAGTTGAAGGTGAAGCAGCTGCT-GGGCCTGTGGGCAGAGTTGTGAGCCTGGGATTCAGA-TCA-GGTGCCAGCCAG---AGGCAGAGTGGATCCTAGGAGCAGATGAGCTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5150583 435 +   5160157 AGGTGGCC----ACTGTGTC-ATGGACGT-CATGTGGACA-----TGGGCACCAGCTCCAGCATCACTGTCAGCAGACACTGCCAGGCCTACCATGGTCCAGGCCCTGGTGTCCTGCCCTACAGGAGCTGTCTGGCTGGCAGGGCAAGTTCATCTTCCCAG-AATGAGGGAGAAGGATGCGGGAAGTTGGGGATACAGGGACCTAGAGCAGGGCTGGGGTCTTGGGGTGTGGCTTCCAAAAGGAAGCTACAGCTGGACCCGAGGGTCTGGAGAGGGAGCACCATGTAGGGGT-ACTAGTGGCACCCCAGTAGC-TGGT---GAGGGGCAGTGCTTGGT---GGAGGAGGGAGTTGAAGGTGAAGCAGCTGCT-GGGCCTGTGGGCAGAGGTGTGAGCCTGGGATTCAGA-TCA-GGTGCCAGCCAG---AGGCAGAGTGGATCCTAGGAGCAGATGAGCTG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7721012 436 +  58131712 AAATGGCC----ACTGTGCC-ATGGACAT-CACGTGGACA-----TGGGTGCGGGCTCCAGCATCACTAGCAGCAGATGCTCCCGGTCCTGCCATGGTCCAGGCCCAGG------CTCCTCTAGGAGCCACCAGGCTGGCAGGGCAAGTTCATGTTCCCAG-AAGGAGGGAGAAGGATGCAGAAAGTCAGGGATACAGGGCCCTAGAGCAGGGCTGGGGTTTTGGAGTGTGTCTTCCAGAAGGAAGCTACAGCCGGACCCAAGGATCCCGAGAGGGGGCACCATGTGGGGGC-ACTAGTGGCACCCCAGTAGCTTGGTCCAGAGAGGCAGTGCTTGGTCAAGAGGGATGGAGTTGGAGGTGAAGTAGCTGCT-GGGCCTGTGGGCAGAGGCGTGAGCCTGGGGCTCGGG-TCA-GGTGCCAGCCAG---AGGCAGAGTGGATCCTAGGGGCAGATGAGCTG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1108473 435 +   1458659 AGGTGGCC----ACTGTGCC-ATGGACGT-CATGTGGACA-----TGGGCACCAGCTCCAGCATCACTGTCAGCAGACACTGCCAGGCCTACCATGGTCCAGGCCCTGGTGTTCTCCCCTCCAGGAGCTATCTGGCTGGCAGGGCAAGTTCATCTTCCCAG-AATGAGGGAGAAGGATGCGGGAAGTTGGGGATACAGGGCCCTAGAGCAGGGCTGGGTTCTTGGGGTGTGGCTTCCAAAAGGAAGCTACAGCTGGACCCGAGGGTCTGGAGAGGGAGCCCCATGTAGGGGT-ACTAGTGGCACCCCAGTAGC-TGGT---GAGGGGCAGTGCTTGGT---GGGGGAGGGAGTTGAAGGTGAAGCAGCTGCT-GGGCCTGTGGGCAGAGGTGTGAGCCTGGGATTCAGA-TCA-GGTGCCAGCCAG---AGGCAGAGTGGATCCTAGGAGCAGATGAGCTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       318963 435 +   4111199 AGGTGGCC----GCTGTGCC-ATGGACAT-GATGTGGACA-----TGGGCACCAGCTCCAGCATCACTGTCAGCAGACACTCCCGGGCCTACCATGGTCCAGGCCCTGGTGTCCTGCCCTCCAGGAGCTATCTGGCTGGCAGGGCAAGTTCATCTTCCCAG-AATGAGGGAGAAGGATGCAGGAAGTTGGGGATACAGGGCCCTAGAGCAGGGCTGGTGTCTTGGGGTGTGGCTTCCAAAAGAAAGCTATAGCTGGACCTGAGGGTCTGGAGAGGGAGCACCATGTAGGGGC-ACTAGTGGCACCCCAGTAGC-TGGT---GAGGGGCAGTGCTTGGT---GGGGGAAGGAGTTGAAGGTGAAGCAGCTGCT-GGGCCTGTGGGCAGAGGTGTGAGCCTGGGATTCAGA-TCA-GGTGCCAGCCAG---AGGCAGAGTGGATCCTAGGAGCAGATGAGCTG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114238141 442 - 132174527 AGGTGGCC----ACTGTGCC-ATGGACAT-CATGTGGACATTATGTGGATGCCAGCTCCAGCGTCCCTGGCAGCAGACACTCCCGGGTCTGTCACAGTCCAGGCCCTGGTGTCCTGCCCTCCAGGAGCTGCCAGGCTGGCAGGGCAAGTTCATATTCCCAG-AAGGAGGGAGAAGGATGCAGGAGGTTGGGG---CAGGGCCCTAGAGCAGGGCTGGGGTCTTGG-ATGTGGCTTCCAGAAGGAAGCTACGGCCAGACCCGAGGGGCTGGAGACGGGGCACCATGTTGGGGGCACTAGTGGCACCCCAGTAGC-TGGT---GAGGGGCAGTGCTTGGTCCAGGGGGATGCAGTTGGAGGTGAAGCAGCTACT-GGGCCTGTGGGCAGAGGTGTGAGCCTGGGGCTCAGGTTCAGGGTGCCAGCCAG---AGGCAGAGTGGATCCTAGGAGCAGATGAGCTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2892912 429 +   3282555 AGGTGGCC----GCTGTGCC-ATGGACAT-CATGTGGACA-----------CCAGCTCCAGCATCGCTGGCAGCAGACACTCTCGGGTCTGTCACGGTCCAGGCCCTGGTGCCCTGCCCTCCAGGAGCTGCCAGCCTGGCAGGGCAAGTTCATATTCCCAG-AAGGAGGGAGAAGGATGCGGGAGGTTGGGG---CAGGGCCCTAGAGCAGGGCTGGGGTCTTGG-GTGTGGCTTCCAGAAGGAAGCTACAGCCAGACCCGAGGGGCTGGAGAAGGGGCACCATGTGGAGGG-ACTAGTGGCACCCTAGTAGC-TGGT---GAGAGGCAGTGCTTGGTCCAGAGGGATGGAGTTGGAGGTGAAGCAGCTGCT-GGGCCTGTGGGCAGAGGTGTGAGCCTGGGGCTTAGATTCA-GGTGTCAGCCAG---AGGCAGAGTGGATCCTAGGAGCAGATGAGCTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       845358 435 +   1024465 AGGTGGCC----ACTGTGCC-ATGGACAT-CACATGGACA-----TGGGCGCCAGCTCCAGCATCGCTGGCAGCAGACACTCCCAGGACTGTCACGGTCCAGGCCCTGGTGTCCTGCCCTCCAGGAGCTGCCAGGCTGGCAGGGCAAGTTCATATTCCCAG-AAGGAGGGAGAAGGATGCAGGATGTTGGGG---CAGGGCCCTAGAGCAGGGCTGGGGTCTTGG-GTGTGGCTTCCAGAAGGAAGCTACAGCCAGACCCGAGGGGCTGGAGAGGGGGCACCATGTGGGGGC-ACTAGTGGCACCCCAACAGC-TGGT---GAGGGGCAGTGCTTGGTCCAGGAGGATGGAGTTGGAGGTGAAGCAGCTGCT-GGGCCTGTGGGCAGAGATGTGAACCTGGGACTCAGGTTCA-GGTGCCAGCCAG---AGGCAGAGTGGATCCTAGGAGCAGATGggctg
i cebCap1.NW_016107979v1    C 0 I 358
s aotNan1.NW_018511953v1      2765165 434 -   3745603 AGGCGGCC----GCTGTGCC-ACGGACAT-CATGTGGACG-----TGGGCGCCAGCTCCGGCATCGCTGGCAGCAGACACTCCTGGGTCTGTCATGGTCCAGGCCCTGATGTCCTGCCCTCCAGGAGCTGCCAGGCTGGCAGGGCAAGTTCATATTCCCAG-AAGGAGGGAGAAGGATGCAGGAGGTTGGGG---CAGGGCCCTAGAGCAGGGCTGCGGTCTTGG-GTGTGGCTTCCAGAAGAAAGTTACAGCCAGACCCGAGGGGCTGGAGAGGGGGCACCATGTGGGGGC-ACTAGTGGCACCCCAGTAGC-TGGT---GAGGGGCAGTGCTTGGTCTAGGGGGATGGAGTTGGAGGTGAAGCAGCTGCT-GGTCCTGTAGGCAGAGGTGTGAGCCTGGGGCTCAGGTTCA-GGTGCCAGCCAG---AGGTAGAGTGGATCCTAGGAG-AGATGAGCTG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8738131 388 -  36342412 AGGGGCCT----GCTGTGCTGATGGACATCCAGGTGAACA-----CAGGCACCAGCTCCAGCATGGCTGGC-----ACACTCCCCGGGCAGCCA-----------CATGTGTGCTTCCCTCCAGGAGCTGCCAGGCTGGTAGCACAATTGGCAGTTCCAAGTGGGGAAGGAAAAGGATGCAAGAGGTCAGGGCCACAGGGG-CTAGAGCAGGGATCAGGGCCCAAGACATGTCTTCTAGAAGAAGCCTGCAGCCAAGCTGAAAGGGC-------ACACCACCATGTGGAGGC-ACTAGGGGCACCCCAGGGGC-TGGT---AACGCGCAGTGTTTGGTTCAGGAAGATGAAACTGAAAA--------------GG----------------GTGAGCCTGGGCCTCAGG-TTG-GGTGCTAGCAAG---AGGCAGAACAGGTCCAGGGATCAGGTGGGCAG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56893068 254 + 124595110 AGGTGGCTGCCAGCTGGAGC-ATCCACCT-CAC------------TGGCAGCTAGCTTC--------------------------------------TCTGGATCCTG-----------------------------------------------TCCCAG-----------------------------------------------------------CTCAGGGTTAGGCCTCCAGAAGGAAGCCACAGCTGGATCCCAGAGGCTGACAAGGG---CCCAGGAAGGAGG-GCCAGAGGCACCCCAGCGGC-TGGT---GAGGGCATGAGCTCACT---TAGG-------------------------CT-GGACAGTTTGGGATAAAGTTGAGCTTGGGACTCAGG-AAA-GATGCCAGAGAATGTAAGCAAGCTGGAT-------GCAGATGAG---
i mm10.chr9                 C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743164   0 -  40214260 C
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=15684.000000
s hg38.chr15_KI270850v1_alt    259566 3 +    430880 ATG
s gorGor5.CYUI01015946v1       358124 3 +    378907 ATG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62603929 3 + 169600520 ATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106524326 3 - 171882078 ATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6258199 3 -   6271500 ATG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5151018 3 +   5160157 ATG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7721448 3 +  58131712 ATG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1108908 3 +   1458659 ATG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       319398 3 +   4111199 ATG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114238583 3 - 132174527 ATG
i calJac3.chr10             C 0 I 306
s saiBol1.JH378276            2893341 3 +   3282555 ACC
i saiBol1.JH378276          C 0 I 307
s aotNan1.NW_018511953v1      2765599 3 -   3745603 ATG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8738519 3 -  36342412 ATA
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56893322 2 + 124595110 -TC
i mm10.chr9                 C 0 C 0
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743164 0 -  40214260 C
e cebCap1.NW_016107979v1       845793 358 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902 0 -  26350515 C

a score=25916.000000
s hg38.chr15_KI270850v1_alt    259569 4 +    430880 AAAG
s gorGor5.CYUI01015946v1       358127 4 +    378907 AAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62603932 4 + 169600520 AAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106524329 4 - 171882078 AAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6258202 4 -   6271500 AAAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5151021 4 +   5160157 AAAG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7721451 4 +  58131712 AAAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1108911 4 +   1458659 AAAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       319401 4 +   4111199 AAAG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114238892 4 - 132174527 aaaG
i calJac3.chr10             I 306 C 0
s saiBol1.JH378276            2893651 4 +   3282555 aaaG
i saiBol1.JH378276          I 307 C 0
s aotNan1.NW_018511953v1      2765602 4 -   3745603 GAAG
i aotNan1.NW_018511953v1    C 0 I 308
s otoGar3.GL873530            8738522 4 -  36342412 GAAG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56893324 4 + 124595110 CCAG
i mm10.chr9                 C 0 C 0
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743164 0 -  40214260 C
e cebCap1.NW_016107979v1       845793 358 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902 0 -  26350515 C

a score=339183.000000
s hg38.chr15_KI270850v1_alt    259573 57 +    430880 GCAGCTGAGTCGGCCAA---AAGGGGGAAGCCACTGTTCATCTGTCCTGGTGG-------------CTTCAGA--------
s gorGor5.CYUI01015946v1       358131 57 +    378907 GCAGCTGAGTCGGCCAA---AAGGGGGAAGCCACTGTTCATCTGTCCTGGTGG-------------CTTCAGA--------
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62603936 57 + 169600520 GCAACTGAGTCGGCCAA---GAGGATGAAGCTGCCATTCATCCATCCTGGTGG-------------CTTCAGA--------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106524333 57 - 171882078 GCAACTGAGTCGGCCAA---GAGGATGAAGCTGCCATTCATCCATCCTGGTGG-------------CTTCAGA--------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6258206 57 -   6271500 GCAACTGAGTCGGCCAA---GAGGATGAAGCTGCCATTCATCCATCCTGGTGG-------------CTTCAGA--------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5151025 57 +   5160157 GCAACTGAGTCAGCCAA---GAGGATGAAGCTGCCATTCATCCATCCTGGTGG-------------CTTCAGA--------
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7721455 57 +  58131712 GCAGCTGAGTCGGCCAA---GAGGGTGAAGCCACGGTTCATCCGTCCTGGTGG-------------CTTCAGA--------
i chlSab2.chr26             C 0 I 9
s manLeu1.NW_012105520v1      1108915 57 +   1458659 GCAACTGAGTCAGCCAA---GAGGATGAAGCTGCCATTCATCCATCCTGGTGG-------------CTTCAGA--------
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       319405 57 +   4111199 GCAACTGAGTCGGCCAA---GAGGATGAAGCTGCCATTCATCCATCCTGGTGG-------------CTTCAGA--------
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114238896 57 - 132174527 GCAGCTGAGTAGGTCAA---AAGGGTGAAGCTGCCATTCATCCATCCTGGTAG-------------CTTCAGA--------
i calJac3.chr10             C 0 I 9
s saiBol1.JH378276            2893655 57 +   3282555 GCAGCTGAGTAGGTCAA---AAGGGTGAAGCTGCCATTCATCTGTCCTGGTAG-------------CTTCAGA--------
i saiBol1.JH378276          C 0 I 9
s aotNan1.NW_018511953v1      2765914 57 -   3745603 GCAGCTGAGTAGGTCAA---AAGGGTGAAGCTGCCATTCATCCGTCCTGGTAG-------------CTTCAGA--------
i aotNan1.NW_018511953v1    I 308 I 9
s otoGar3.GL873530            8738526 57 -  36342412 GCAGCTGAGTAGGCCAA---GGGGATGAAGCCACCGTTCATCCATCATGGAGG-------------CTTCAGG--------
i otoGar3.GL873530          C 0 I 35
s mm10.chr9                  56893328 76 + 124595110 ---GCAGAGTGGGCCAGTCTGAGG--GACACTGAGATCTACTCTTCGGAGCAGAGTCCCTAGGGCACACCAGGACCACCGA
i mm10.chr9                 C 0 C 0
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743164  0 -  40214260 C
e cebCap1.NW_016107979v1       845793 358 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=787700.000000
s hg38.chr15_KI270850v1_alt    259630 144 +    430880 GAAGAACTAGAGCTCTCAGCCATGGGTAGTGGCAGA------------------------CTCTCTGTGGTAACTGTGCCACGGGGGCCAGCCCACTCATGGTT-TAAATGAACACCTC----------------------------------------TCCCCAAAGGCAGAATGGGAGTTGTTCCAT--------------------AGCAGGGCAGGGCAGGGCAG
s gorGor5.CYUI01015946v1       358188 135 +    378907 GAAGAACCAGAGCTCTCAGCCATGGGTAGTGGCAGA------------------------CTCTCTGTGGTAATTGTGCCATGGGGGCCAGCCCAGTCATCGTT-TAAATGAACACCTC----------------------------------------TCCCCAAAGGCAGAATGGGAGTTGTTCCAT--------------------AGCAGGGCAGG---------
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62603993 144 + 169600520 GAAGAACTGGAGCTCTCAGCCATGGATAGCAGCAGA------------------------CTCTGTGTAGTAGCTGTGCCATGGGGGCCAGCCCAGTCATCGTT-TAAACGAACACCTC----------------------------------------TCCCCAAAGGCAGAACAGGAGTTGTTCCAT--------------------AGCAAGGCAGAGCAGGGCAG
i rheMac8.chr7              C 0 I 34
s macFas5.chr7              106524390 144 - 171882078 GAAGAACTGGAGCTCTCAGCCATGGATAGCAGCAGA------------------------CTCTGTGTAGTAGCTGTGCCATGGGGGCCAGCCCAGTCATCGTT-TAAATGAACACCTC----------------------------------------TCCCCAAAGGCAGAACAGGAGTAGTTCCAT--------------------AGCAAGGCAGAGCAGGGCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6258263 144 -   6271500 GAAGAACTGGAGCTCTCAGCCATGGATAGCAGCAGA------------------------CTCTGTGTGGTAGCTGTGCCATGGGGGCCAGCCCAGTCATCGTT-TAAATGAACACCTC----------------------------------------TCCCCAAAGGCAGAACAGGAGTTGTTCCAT--------------------AGCAAGGCAGAGCAGGGCAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5151082 144 +   5160157 GAAGAACTGGAGCTCTCAGCCATGGATAGCGGCAGA------------------------CTCTCTGTGGTAGCTGTGCCATGGGGGCCAGCCCAGTCATCGTT-TAAATGAACACCTC----------------------------------------TCCCCAAAGGCAGAACAGGAGTTGTTCCAT--------------------AGCAAGGCAGAGCAGGGCAG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7721521 142 +  58131712 GAAGAACTAGAGCTCTCAGCCATGGGTAGCAGCAGA--------------------------CTCTGTGATCACTGTGCCATGGGGGCCAGCCCAGTTATCGCT-TAAACGAACACCTC----------------------------------------TTCCCAAAGGCAGAACAGGGGTTGTTCCAT--------------------AGCAGGGCAGAGTGGCGCAG
i chlSab2.chr26             I 9 C 0
s manLeu1.NW_012105520v1      1108972 144 +   1458659 GAAGAACTGGAGCTCTCAGCCATGGATAGTGGCAGA------------------------CTCTCTGTGGTAGCTGTGCCATGGGGGCCAGCCCAGTCATCGTT-TAAATGAACACCTC----------------------------------------TCCCCAAAGGCAGAACAGGAGTTGTTCCAT--------------------AGCAAGGCAGAGCAGGGCAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       319462 139 +   4111199 GAAGAACTAGAGCTCTCAGCCATGGATAGCGGCAGA------------------------CTCTCTGTGGTAGCTGTGCCATGGGGGCCAGCCCAGTCATCGCT-GAAATGAACACCTC----------------------------------------TCCCCAAAGGCAGAACAGGAGTTGTTCCAT--------------------AGCAGGGCAGAGCAG-----
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114238962 135 - 132174527 GAAGAACTGGAGCTCTCAGCCATGGGCAGCAGTAGA--------------------------CTCTCTGGTAACTGTGCCGTGGAGCCCAG--CAGCCATTGCT-TAAATGAACACCTC----------------------------------------TTCCCGAAGGCAGAACAGGAGTTGCTGCAT--------------------AGCAGGGCAGAGCAG-----
i calJac3.chr10             I 9 C 0
s saiBol1.JH378276            2893721 113 +   3282555 GAAGAATTACAACTCTCAGCCATGGGTAGCAGCAGA----------------------------CCGTGGCAACTGTGCTATGGGG-----------------------TGAACACCTC----------------------------------------TTCCCAAAGGCAGAACAGGAGTTGCTGCAT--------------------AGCAGGGCAGAGCAG-----
i saiBol1.JH378276          I 9 C 0
s cebCap1.NW_016107979v1       846151 137 +   1024465 GAAGAACCAGAGCTCTCAGCCACGGGCAGCAGCAGA------------------------CTCTCTGTGGTAACCGTGCCATGGGGCCCAG--CAGCCGCTGCT-TAAATGAACACCTC----------------------------------------TTCCCGAAGGCAGAACAGGAGTTGCTGCAT--------------------AGCAGGGCAGAGCAG-----
i cebCap1.NW_016107979v1    I 358 C 0
s aotNan1.NW_018511953v1      2765980 156 -   3745603 GAAGAACTAGAGCTCTCAGCCATGGGCAGCAGCAGA------------------------CTCTCTGTGGTAACTGTGCCATGGGG-CCAG--CAGCCATTGCT-TAAATGAACACCTC----------------------------------------TTCCCGAAGGCAGAACAGGAGTTGCTGCATagcagggcagagcagggcagagcagggcagagcag-----
i aotNan1.NW_018511953v1    I 9 C 0
s otoGar3.GL873530            8738618 191 -  36342412 GGGAAATTAGAGCTTCCAGCCCTGAGCAGAGGTAGACTACTATCTGCTG-GATCACAGGGCTCTCTATGCTAACTGTGCTGAGGAG-CCAG--CAGCCGTCACT-TAAATGAACACCTCTTCTAAGTACAGACGGTGCCCTAATTGCCAGGACAACCTTTCCCTGAAGGCAGAGCTGGAGTTATTCCAG--------------------AACAGGG-------------
i otoGar3.GL873530          I 35 C 0
s mm10.chr9                  56893404 134 + 124595110 TCAAAATTATAATTTCCAGCCGCATGTTGAGGCTGA--CTGAGCGGCTGAGATGCCAGGGCTGTCGGTGCTAACTA----GTGTGAGCCAG--CAGTCATCACTCTTCACGGATTGGTC----------------------------------------CCCACAGGG----------------TCTAA--------------------GGCACTGTG-----------
i mm10.chr9                 C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743164   0 -  40214260 C
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=25695.000000
s hg38.chr15_KI270850v1_alt    259774 9 +    430880 GGCAGACTC
s gorGor5.CYUI01015946v1       358323 4 +    378907 -----ACTC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106524534 4 - 171882078 -----ACTC
i macFas5.chr7              C 0 I 2
s macNem1.NW_012011056v1      6258407 4 -   6271500 -----ACTC
i macNem1.NW_012011056v1    C 0 I 2
s cerAty1.NW_012001384v1      5151226 4 +   5160157 -----ACTC
i cerAty1.NW_012001384v1    C 0 I 2
s chlSab2.chr26               7721663 4 +  58131712 -----ACTC
i chlSab2.chr26             C 0 I 2
s manLeu1.NW_012105520v1      1109116 4 +   1458659 -----ACTC
i manLeu1.NW_012105520v1    C 0 I 2
s colAng1.NW_012116021v1       319601 9 +   4111199 GGCAGACTC
i colAng1.NW_012116021v1    C 0 I 1143
s calJac3.chr10             114239097 9 - 132174527 GGCAGACTT
i calJac3.chr10             C 0 I 2
s saiBol1.JH378276            2893834 9 +   3282555 GGCGGACTC
i saiBol1.JH378276          C 0 I 2
s cebCap1.NW_016107979v1       846288 9 +   1024465 GGCAGACTC
i cebCap1.NW_016107979v1    C 0 I 2
s aotNan1.NW_018511953v1      2766136 9 -   3745603 ggcagaCTC
i aotNan1.NW_018511953v1    C 0 I 2
s otoGar3.GL873530            8738809 3 -  36342412 ------CTC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56893538 8 + 124595110 AGCA-GCTC
i mm10.chr9                 C 0 C 0
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743164 0 -  40214260 C
e panPan2.chr15              76637185 24711 +  99763055 I
e rheMac8.chr7               62604137 34 + 169600520 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902 0 -  26350515 C

a score=70325.000000
s hg38.chr15_KI270850v1_alt    259783 17 +    430880 TTGTGGGCCGCCCTGGG-
s gorGor5.CYUI01015946v1       358327 17 +    378907 TTGTGGGCCATCCTGGG-
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106524540 17 - 171882078 TTGTAGGCCGTCCTGGG-
i macFas5.chr7              I 2 C 0
s macNem1.NW_012011056v1      6258413 17 -   6271500 TTGTAGGCCGTCCTGGG-
i macNem1.NW_012011056v1    I 2 C 0
s cerAty1.NW_012001384v1      5151232 17 +   5160157 TTGTAGGCCGTCCTGGG-
i cerAty1.NW_012001384v1    I 2 C 0
s chlSab2.chr26               7721669 17 +  58131712 CCGTGGGCCGTCCTGGG-
i chlSab2.chr26             I 2 C 0
s manLeu1.NW_012105520v1      1109122 17 +   1458659 TTGTAGGCCGTCCTGGG-
i manLeu1.NW_012105520v1    I 2 C 0
s calJac3.chr10             114239108 17 - 132174527 CTGTGGGCTGCCCTGGG-
i calJac3.chr10             I 2 C 0
s saiBol1.JH378276            2893845 17 +   3282555 CCATGGGCCGCCCTGGG-
i saiBol1.JH378276          I 2 C 0
s cebCap1.NW_016107979v1       846299 17 +   1024465 CCATGGGCCGCCCTGGG-
i cebCap1.NW_016107979v1    I 2 C 0
s aotNan1.NW_018511953v1      2766147 17 -   3745603 CCATGGGCCGCCCTGGG-
i aotNan1.NW_018511953v1    I 2 C 0
s otoGar3.GL873530            8738812  7 -  36342412 ----------TCCTGAG-
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56893546 18 + 124595110 CTCTGGGCTACGGTAGAG
i mm10.chr9                 C 0 C 0
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743164  0 -  40214260 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       319610 1143 +   4111199 I
e rheMac8.chr7               62604137 34 + 169600520 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=27400.000000
s hg38.chr15_KI270850v1_alt    259800 7 +    430880 CAGGCAG
s gorGor5.CYUI01015946v1       358344 7 +    378907 CAGGCAG
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106524557 7 - 171882078 CCTACAG
i macFas5.chr7              C 0 I 4
s macNem1.NW_012011056v1      6258430 7 -   6271500 CCTACAG
i macNem1.NW_012011056v1    C 0 I 4
s cerAty1.NW_012001384v1      5151249 7 +   5160157 CCTACAG
i cerAty1.NW_012001384v1    C 0 I 4
s chlSab2.chr26               7721686 7 +  58131712 CAGATGG
i chlSab2.chr26             C 0 I 1
s manLeu1.NW_012105520v1      1109139 7 +   1458659 CCTACAG
i manLeu1.NW_012105520v1    C 0 I 4
s colAng1.NW_012116021v1       320753 3 +   4111199 ----CAG
i colAng1.NW_012116021v1    I 1143 I 4
s calJac3.chr10             114239125 7 - 132174527 CAGGCAG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2893862 7 +   3282555 CAGGCAG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       846316 7 +   1024465 CAGGCAG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2766164 7 -   3745603 CAGGCAG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8738819 7 -  36342412 CAGGCAC
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56893564 7 + 124595110 CAAACAG
i mm10.chr9                 C 0 C 0
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743164 0 -  40214260 C
e panPan2.chr15              76637185 24711 +  99763055 I
e rheMac8.chr7               62604137 34 + 169600520 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902 0 -  26350515 C

a score=2499367.000000
s hg38.chr15_KI270850v1_alt    259807 432 +    430880 CACACCTGATGCTCCCATCAGGAGGCTGCGTGAGCATCTGGACCCAGCACATGATCACAGTGAGTTCTCGGCAGGGAGCGGTCTTGTGGGGCGCAGAGCTGACTCTGTCACTCAGGAGCCACGGCA-CAC-AGCACTGCCCCAAGTACCTCC--AGAGGGG-ATCCCTGTCAGCCCTTGAAAATGGCAGAG---CCCAC-CCCAGCCCCCTTTTCAAGCTCCCTTGCTTCGGCAAGGACCTCC------------------------------------------TGAGCCTGGCGCTC--------------------------TC--------------------------CCTCCTGAGAGGTGCAGATGGTACTCAGC------AAGTGCAAAGC-------------------------------------------------------------------------CGAGG------------------------------------------------TTTCTTG----------GGCCTCTCACATC-AGC--------ACCTCCCAGACCTCGGTTCTGTATTTCC---CTGGAGCTCCACTCCTGCTATGGT----------GCCCTTCCCACAATGAGATATTCATCAGGCTGGTGTCTACAGCTGCTGCGTACCCTCAGTTG
s gorGor5.CYUI01015946v1       358351 431 +    378907 CACACCTGATGCTCCCATCAGGAGGCTGCGTGAGCATCTGGACCCAGCACATGATCACAGTGAGTTCTGGGCAGGGAGCGGTCTTGTGGGGCGCAGAGCTGACTCTGTCACTCAGGAGCCACGGCA-TGC-AGCACTGCCCCAAGTACCTCC--AGAGGGG-ACCCCTGTCAGCCCTTGAAAATGGCAGAG---CCCAC-CCCA-CCCCCTTTTCAAGCTCCCTTGCTTCGGCAAGGACCTCC------------------------------------------TGAGCCTGGCGCTC--------------------------TC--------------------------CCTCCTGAGAGGTGCAGATAGTACTCAGC------AAGTGCAAAGC-------------------------------------------------------------------------CGAGG------------------------------------------------TTTCTTG----------GGCCTCTCACATC-AGC--------ACCTCCCAGACCTCGGTTCTGTATTTCC---CTGGAGCTCCACTCCTGCTATGGC----------GCCCTCCCCACAATGAGATATTCATCAGGCTGGTGTCTACAGCTGCTGCGTACCCTCAGTTG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62604171 431 + 169600520 CACACCTGGTGCTCCCACCAGGAGACTGTGTGGGCATCTGAACCCAGCACATGATCACAGTGAGTTCTGGATAGGGAACAGTCTTGTGGGGTGCAGAGCTGACTCTGTCACTCAGAACCCATGGCA-TGC-GGTACTGCTCCAAGTACCTCC--AGAGGGGCCCCCCTGCCAGCCCTTGAAAATGGCAGAG---CCCACCCCTAGCCCCCTTTCTAAGCTCCCTTGCTTGGGCAAGGACCTCC------------------------------------------TGAGCCTGGCATTC--------------------------TC--------------------------CCTCCTGAGAGGTGCAGATGGTATCCAGC------AAGTGCAAAGC-------------------------------------------------------------------------TGAGG------------------------------------------------TTTCTTG----------GGTCTGTCACATC-AGC--------ACCTCTGAAGCCTGGGTTCTGTATTTCC---CTGGAGCCCCACTCCTGCTATGGC----------CCCCTCCCCACAATGAGATATTCATTGGGCTGCTGTCTACAGCTGCTGCTTA---GCAGTTG
i rheMac8.chr7              I 34 C 0
s macFas5.chr7              106524568 431 - 171882078 CACACCTGGTGCTCCCACCAGGAGACTGTGTGGGCATCTGAACCCAGCACATGATCACAGTGAGTTCTGGATAGGGAACAGTCTTGTGGGGTGCAGAGCTGACTCTGTCACTCAGAAGCCATGGCA-TGC-GGTACTGCTCCAAGTACCTCC--AGAGGGGCCCCCCTGCCAGCCCTTGAAAATGGCAGAG---CCCACCCCTAGCCCCCTTTCTAAGCTCCCTTGCTTGGGCAAGGACCTCC------------------------------------------TGAGCCTGGCATTC--------------------------TC--------------------------CCTCCTGAGAGGTGCAGATGGTATCCAGC------AAGTGCAAAGC-------------------------------------------------------------------------TGAGG------------------------------------------------TTTCTTG----------GGTCTGTCACATC-AGC--------ACCTCTGAGGCCTGGGTTCTGTATTTCC---CTGGAGCCCCACTCCTGCTATGGC----------CCCCTCCCCACAATGAGATATTCATTGGGCTGCTGTCTACAGCTGCTGCTTA---GCAGTTG
i macFas5.chr7              I 4 C 0
s macNem1.NW_012011056v1      6258441 429 -   6271500 CACACCTGGTGCTCCCACCAGGAGACTGTGTGGGCATCTGAACCCAGCACATGATCACAGTGAGTTCTGGATAGGGAACAGTCTTGTGGGGTGCAGAGCTGACTCTGTCACTCAGAAGCCATGGCA-TGC-GGTACTGCTCCAAGTACCTCC--AGAGGGGCCCCCCTGCCAGCCCTTGAAAATGGCAGAG---CCCACCCCTAGCCCCCTTTCTAAGCTCCCTTGCTTGGGCAAGGACCTCC------------------------------------------TGAGCCTGGCATTC--------------------------TC--------------------------CCTCCTGAGAGGTGCAGATGGTATCCAGC------AAGTGCAAAGC-------------------------------------------------------------------------TGAGG------------------------------------------------TTTCTTG----------GGTC--TCACATC-AGC--------ACCTCTGAGGCCTGGGTTCTGTATTTCC---CTGGAGCCCCACTCCTGCTATGGT----------CCCCTCCCCACAATGAGATATTCATTGGGCTGCTGTCTACAGCTGCTGCTTA---GCAGTCG
i macNem1.NW_012011056v1    I 4 C 0
s cerAty1.NW_012001384v1      5151260 431 +   5160157 CACACCTGGTGCTCCCACCAGGAGACTGTGTGGGCATCTGAACCCAGCACATGATCACAGTGAGTTCTGGATAGGGAACAGTCTCGTGGGGCGCAGAGCTGACTCTGTCACTCAGAAGCCATGGCA-TGC-GGTACTGCTCCAAGTACCTCC--AGAGGGGTCCCCCTGCCAGCCCTTGAAAATGGCAGAG---CCCACCCCTAGCCCCCTTTCTAAGCTCCCTTGCTTGGGCAAGGACCTCC------------------------------------------TGGGCCTGGCATTC--------------------------TC--------------------------CCTCTTGAGAGATGCAGATGGTATCCAGC------AAGTGCAAAGC-------------------------------------------------------------------------TGAGG------------------------------------------------TTTCTTG----------GGTCTCTCACATC-AGC--------ACCTCTGAGGCCTGGGTTCTGTATTTCC---CTGGAGCCCCACTCCTGCTATGGC----------CCCCTCCCCACAGTGAGATATTCATTGGGCTGCTGTCTACAGCTGCTGCTTA---GCAGTTG
i cerAty1.NW_012001384v1    I 4 C 0
s chlSab2.chr26               7721694 432 +  58131712 -GCAACTGATGCTCCCGCCAGGAGGCTGCATGGGCATCTGGACCCAGCATATGATCACAGTGAGTTCTGGGTAGGGAGTGGTCTTGTGGGGTGCAGAGCTGACTCTGTCACTCAGGAGCCATGGCA-TGC-TGTACTGCCCCAAGTACCTCC--AGAGGGGTCCCCCTGCCAGCCCTCAAAAATGGCAAAG---CATAC-CCCAGCCCCCTTTCCAAGCTCCCTTGCTTGGGCAGGGACCTCC------------------------------------------TGAGCCTGGCACTC--------------------------TC--------------------------CCTCCTGAGAGGCGCAGATGGTATTCAGC------AAGTGCAAAGC-------------------------------------------------------------------------CGAGG------------------------------------------------TTTCTTG----------GGCCTCTCACATC-AAC--------ACCTCCCAGTCCCAGGTTCTGTATTTCC---CTGGAGCCCCACTCCTGCTATGGC----------CCCCTCCCCACAATGAGATATTCATCAGGCTGGTGTCTACAGCTGCTGTGTACTCTCGGTTG
i chlSab2.chr26             I 1 C 0
s manLeu1.NW_012105520v1      1109150 431 +   1458659 CACACCTGGTGCTCCCACCAGGAGACTGTGTGGGCATCTGAACCCAGTACATGATCACAGTGAGTTCTGGATAGGGAGCAGTCTTGTGGGGCGCAGAGCTGACTCTGTCACTCAGAAGCCACGGCA-TGT-GGTACTGCTCCAAGTACCTCC--AGAGGGGTCCCCCTGCCAGCCCTTGAAAATGGCAGAG---CCCACTCCTAGCCCCCTTTCTAAGCTCCCTTGCTTGGGCAAGGACCTCC------------------------------------------TGAGCCTGGCATTC--------------------------TC--------------------------CCTCGTGAGAGGTGCAGATGGTATCCAGC------AAGTGCAAAGC-------------------------------------------------------------------------TGAGG------------------------------------------------TTTGTTG----------GGTCTCTCACATC-AGC--------ACCTCTCAGGCCTGGGTTCTGTATTTCC---CTGGAGCCCCACTCCTGCTATGGC----------CCCCTCCCCACAATGAGATATTCATCGGGCTGCTGTCTACAGCTGCTGCTTA---GCAGTTG
i manLeu1.NW_012105520v1    I 4 C 0
s colAng1.NW_012116021v1       320760 455 +   4111199 CACCGCTGGTGCTCCCACCAGGAGACTGCATGGGCATCTGAACCCAGCACATGATCACAGTGAGTTCTGGATAGGGAGCAGTCTTGTGGGGTGCAGAGCTGACTC--TCACTCAGAAGCCACGGCA-TGC-GGTACTGCTCCAAGTACCTCC--AGAGGGGTCCCCCTGCCAGCCCTTGAAAATGGCAGAG---CCAAG----------------GACCTCCTGAGCCTGGCGCTCTCCCTCCTGAGAGGTGCAGATGGTATTCAGCAAGCGCAAAGCTGCCTCCTGAGCCTGGCACTC--------------------------TC--------------------------CCTCCTGAGAGGCGCAGATGGTATTCAGC------AAGTGCAAAGC-------------------------------------------------------------------------TGAGG------------------------------------------------TTTCTTG----------GGTCTCTCACATC-AGC--------ACCTCTGAGGCCTGGGTTCTGTATTTCC---CTGGAGCCCCACTCCTGCTATGGC----------CCCCTCCCCACAATGAGATATTCATCAGGCTGGTGTCTACAGCTGCTGCTTA---CTCGTTG
i colAng1.NW_012116021v1    I 4 C 0
s calJac3.chr10             114239132 507 - 132174527 CGCACCTGATGCTCCCACCAGGAGGCTGCATGGGCATCTGGACCCAGCACTTGATGCCAGTGAGTTCTAGGTAGAGAGAGGTCTTGTGGGGTGCAGAGCTGACTCTGTCACTCAGAAGCCATGGCG-CAC-AGGACTGCCCCAAGTACCT-----CAAGGGTTCCCCTGCCAGCCCTTGAAAATGGCAGAG--CTCCCCTCCCAGCCCCCTTTCCAAGCTCCCTTGCTTGGGCAAGGACCTCC------------------------------------------TGAGCCTGACAGTC--------------------------TC--------------------------CCTCCTGAGAGGTGCAGATGGTGTTCAGC------AAGTGGAAAGC-------TGAGGTCCCCACCCAGCAAGTGGCTCA-----------------GATGGGGAGCCGTTGGGCATCTGGAAG--------------------GAGGTGGCCTTCACAGTGTGGAATAAGGTTTCTTG----------GGCCTCTTACATC-AAT--------ACCTCCCAGGCCTGGGATC--TATTTTC---CTGAAGCCCCACTCCTGCTATGGC----------CCCCTCCCCACAATTAGATATTCAGCAGGCTGGTGGCAACAGCAGCTGTGTACCCTCAGTTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2893869 514 +   3282555 CGCACCTGATGCTCCCGCCAGGAGGCTGCGTGGGCATCTGGACCCAGCATGTGATGCCAATGAGTTCTGGGTAGAGAGAGGTCTTGTGGGGTGCAGAGCTGACTCTGTCACTCAGAAGCCACGGCA-CCC-AGGACTGCCCCAAGTACCTCC--ACAGGCGTTCCCCCACCAGTCCTTGAAAATGGCAGAGCCCTCCGCCCCCAGCCCCCTTTCCAAGCTCCCTTGCTTGGGCGAGGACCTCC------------------------------------------TGAGCCTGACAGTC--------------------------TC--------------------------CCTCCTGAGAGGTGCGGATGGTGTTCAGC------AAGTGGAAGGG-------CTAGGTCCCCACCCAGCAAGTGGCTCAGATGGGGAGCCTTTGGGCATCT-----------------GGAAG--------------------GAGTTGGTCTTCACAGCATGGAAGAAGGTTTCTTG----------GGCCTCTGACATC-AAC--------ACCTCCCAGGCCTGGGATCTGTGTTTTC---CTGGAGCCCCACTCCTGCTATGAC----------CCCCTCCCCACAATTAGATATTCAGCAGGCTGGTGGCAACAGCAGCTGTGTACCCTCAGTTG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       846323 505 +   1024465 CACACCTGATGCTCCCGCCAGGAGGCTGCATGGGCATCTGGACGCAGCACGTGATGCCAGTGAGTTCTGGATAGAGAGAGGTCTTGTGGGGCGCAGAGCTGACTCTGTCACTCAGAAGCCATGGCA-CAC-AGGACTGCCCCAAGTACCTCC--ATAGGGGTTCCCCTGCCAGCTCCTGAAAATGGCAGAG--CCACCCCCCCAGCCCCCTTTCTAAGCTCCCTTGCTTGGGCAAGGACCTCC------------------------------------------TGAACCTGAGAGTC--------------------------TC--------------------------CCTCCTGAGATTTGCAGATGGTGTTCAGC------AAGTGGAAAGT-------TGAGGTCCCCACCCAGCAAGTGGCTCAGATGGGGAGCCTTTGGGCATT------------------GGAAG--------------------GAGGTGGCCATCACAGTGTGGAATAAGGTTTCTTG----------GGCCTCTT-------GG--------ACCTCCCAGGCCTGGGATCTGTGTTTTC---CTGGAGCCCCACTCCTGCTATGGG----------CCCCTCCCCATCATTAGATATTCAGCAGGCTGGTGGCAACAGCAGCTGTGTACCCTCAGTTG
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2766171 507 -   3745603 CGCACCTGATGCTCCCACCAGGAGGCTGCATGGGCATCTGGACCCAGCACGTGATGCCAGTGAGTTCTGGGTAGAGAGGGGTCTTGTGGGGCGCAGAGCTGA--CTATCACTCAGAAGCCATGGCA-CAC-AGGACTGCCCCAAGTACATCC--ACAGGAGTTCCCCTGCCAGCCCTTGAAAATGGCAGAG---CACCCCCACAACCCCCTTTCCAAGCTCCCTTGCTTGGGCAAGGACCTCC------------------------------------------TGAGCCTGACAGTC--------------------------TC--------------------------CCTCCTGAGAGGTGCAGATGGTGTTCAGC------AAGTGGAAAGC-------CAAGGTCCCCACCCAGCAAGTGGCTCAGA-------------------------------------TGGGGAGCCTGTGGGCATCTGGAAGGAGGTGGCCTTCACAGCGTGGAATAAGGTTTCTTG----------GGC--CTTACATC-AAC--------ACCTCCCAGGCCTGGGATCTGTGTTTTC---CTGGAGCCCCACTCCTGCTATGGC----------CCCCTCCCCACAATTACATATTCAGCAGGCTGGTGGCAACAGCAGCTGTGTACCCTCAGTTG
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8738826 410 -  36342412 TGCACCTGATGCTCCAGCTGAAAGGCTGTGTGGATGGCAAAACC-------------CACTTAGTTCAG------------------AGGGCACAGAGCTGA--CTGCCCCTCAGGAGACTCCACA-CTCTGGTACTGCCT------------------GGGTCCCTTTCCAACCTT-----------------CCCTCTCCC-----------------------------CAGAGATCTCC------------------------------------------TGAGCCTGGCACCCTCCTCCCCCTACCCCAGGGTACATGGTC--------------------------CCTCCTGAGA---GCAGGGGGCACTCAGC------AAGTGCAAAGC-------CAAAGTCCTCACCCAGCAGGTGGCTCAGAC------------------------------------TGAGT------------------------------------------------GTGCAGGCTGGGAAGGAGGCGGCTTTGACC-AGGGTGGAATAGTTTCTCAGGCCTGGGTTCTATGTTCTCCTTCTTTGGCCC----CCTGCT---GT----------CCCCTCCCTGCAATGAAATATTCAGCAGGCTGGTGGCTATAGCAGCTGTGCACCCTGAGGTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56893571 505 + 124595110 CATGCTTGGTGCTCCCACCTAGAGGCCACGTGGTCA--------CAGCA--TGACCCCTATTCTTTCTACAT---GAGCAGGATCCAAGAGAACATGGCTGGCCCTGCCACT--GGATCTGCAGCACTAT-GGTGCTGCTCCAAGAACTTTCCAACAGGGCTTACCCTG---ACCCTTGAAAAGGGCAGGA---CCCACCTCCGGGTCCCTTTCC-AGCACT----------CAGAGGCCTCC------------------------------------------TGGGCCCCACAAGT--------------------------TCCTTTCTACCCCATCAGGGTGTGCGCTCCTCCTGAGAAGTAC---TGGAACACAGAGGGGGGAGGTGCGGGGTGTGGGGGAGCAGCTCCCACCCAGCAGGTAGCTCAGA-------------------------------------GGAGG--------------------AAGCTGCCTTAAAGAGGGTCAAGTAAGATTCCTCA----------GACCCTGCACTTCTTTT--------GCTTCTTTGGCTTCTGTTCTCACTTCTC---CCAGGCCCTAGCATCTACCATAGCCCCTTTCTGACCCCTCCCCACAATGAAATCT-------GCCAGTGGCTAGGGCAGCTGTATGTCCTGAGTCA
i mm10.chr9                 C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743164   0 -  40214260 C
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=151080.000000
s hg38.chr15_KI270850v1_alt    260239 20 +    430880 CTGGGAGCC-T--TTGTCAAGAA-
s gorGor5.CYUI01015946v1       358782 20 +    378907 CTGGGAGCC-T--TTGTCAAGAA-
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62604602 20 + 169600520 TTGGGAGCC-T--TTGTCAGGAA-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106524999 20 - 171882078 TTGGGAGCC-T--TTGTCAGGAA-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6258870 20 -   6271500 TTGGGAGCC-T--TTGTCAGGAA-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5151691 20 +   5160157 TTGGGAGCC-T--TTGTCAGGAA-
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7722126 20 +  58131712 CTGGGAGAC-T--TTGTCAAGAA-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1109581 20 +   1458659 TTGGGAGCC-T--TTGTCAGGAA-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       321215 21 +   4111199 CTGGGAGCCTT--TTGTCAGGAA-
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114239639 20 - 132174527 CCGGGAGCC-T--TTGTCAAGAA-
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2894383 20 +   3282555 CCGGGAGCC-T--TTGTCAAGAA-
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       846828 20 +   1024465 CTGGGAGCC-T--TTGTCAAGAA-
i cebCap1.NW_016107979v1    C 0 I 5
s aotNan1.NW_018511953v1      2766678 20 -   3745603 TTGGGAGCC-T--TTGTCAAGAA-
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8739236 20 -  36342412 CTGGGAGTC-T--TTGTCATCCA-
i otoGar3.GL873530          C 0 I 1
s mm10.chr9                  56894076 19 + 124595110 CTGGGAGCC-TTGTTATCAG----
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1743164 21 -  40214260 CTGGGAGCC-A--CTGTCATCGGA
i canFam3.chr30             C 0 C 0
e dasNov3.JH572216             208464  0 -   1040364 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=163039.000000
s hg38.chr15_KI270850v1_alt    260259 27 +    430880 TGCCCAGGAATGAGGAGGGCACAGGAC
s gorGor5.CYUI01015946v1       358802 27 +    378907 TGCCCAGGAATGAGGAGGGCACAGGAC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62604622 27 + 169600520 TGCCCAGGAATGAGGAAGGGACGGGAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106525019 27 - 171882078 TGCCCAGGAATGAGGAAGGGACGGGAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6258890 27 -   6271500 TGCCCAGGAATGAGGAAGGGACGGGAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5151711 27 +   5160157 TGCCCAGGAATGAGGAAGGGACGGGAC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7722146 27 +  58131712 TGCACAGGAATGGGGAGGGCACGGGAC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1109601 27 +   1458659 TGCCCAGGAATGAGGAAGGGACAGGGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       321236 27 +   4111199 TGTCCAGGAATGAGGAAGGGACAGGAC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114239659 26 - 132174527 TGCCCAGGAAGGGAGAGGGCACAGAA-
i calJac3.chr10             C 0 I 1
s saiBol1.JH378276            2894403 26 +   3282555 TGCCCAGGAAGGGAGAGGGCACAGGA-
i saiBol1.JH378276          C 0 I 1
s aotNan1.NW_018511953v1      2766698 26 -   3745603 TGCCCAGGAAGGGAGAGGGCACAGGA-
i aotNan1.NW_018511953v1    C 0 I 1
s otoGar3.GL873530            8739257 26 -  36342412 TGCCCGGAAAGGGGGAGGGTACAGGA-
i otoGar3.GL873530          I 1 I 1
s mm10.chr9                  56894095 26 + 124595110 AGTCCTGGAAGGAGGAGAGGCTGGGA-
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1743185 26 -  40214260 TGCCCGGGAG-GGGGAGGGGACAGGAC
i canFam3.chr30             C 0 C 0
e dasNov3.JH572216             208464  0 -   1040364 I
e cebCap1.NW_016107979v1       846848  5 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902  0 -  26350515 C

a score=1863126.000000
s hg38.chr15_KI270850v1_alt    260286 240 +    430880 CCA-GACCATCAGCAACCCTCTTGCACTCTATAGTCCCATGTT-ACTCAGAGCTTCC-C-CATGCTCCAGCAAGATGAAGG--ACTAGATTGAATGGGCACCAGG--------CTGGCAGTGCCACCCAGGAAAGCT-GGGAAGAGGCTACATG-----G--GCTACCTGGCCCACTCAGGGAGG-AGGGCAGGACTGGGTATTGtctt----gacagcaaccctgtcccacaaca--ctgaactgggcagggaaggggtcaggtgtcc
s gorGor5.CYUI01015946v1       358829 247 +    378907 C-A-GACCATCAGCAACCCTCTTGCACCCTACAGTCCCATGTT-ACTCAGAGCTTCC-C-CATGCTCCAGCAAGATGAAGG--ACTAGATTGAATGGGCACCAGGGGGCCAGGCTGGCAGTGCCACCCAGGAAAGCC-GGGAAGAGGCTACATG-----G--GCTACCTGGCCCACTCAGGGAGG-AGGGCAGGACTGGGTATTGTCTT----GACAGCAACTCTGTCCCacaaca--ctgaactgggcagggaaggggtcaggtgtcc
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62604649 247 + 169600520 C-A-GACCATCAGCAACCGTCTCGCACTCTATAGTCTCATGTT-ACTCAGAGCTTCC-C-CGTTCTCCAGCAATATGAAGG--ACCAGATTGAATGGGCACCAGGGGGCCAGGCTGGCAGTGTCACCCAGGAAAGCC-TGGAAGAGGCTACATG-----G--GCTACCTGGCCCACTCGGGGAGG-AGGCCAGGACTGAGTCTTGTTTT----AACAGCAGCCCTGTGCCacaaca--ctgaactgggcagggaaagggtcaggtgtcc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106525046 247 - 171882078 C-A-GACCATCAGCAACCGTCTCGCACTCTATAGTCTCATGTT-ACTCAGAGCTTCC-C-CGTTTTCCAGCAATATGAAGG--ACCAGATTGAATGGGCACCAGGGGGCCAGGCTGGCAGTGTCACCCAGGAAAGCC-TGGAAGAGGCTACATG-----G--GCTACCTGGCCCACTCGGGGAGG-AGGCCAGGACTGAGTCTTGTTTT----AACAGCAGCCCTGTGCCacaaca--ctgaactgggcagggaaagggtcaggtgtcc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6258917 247 -   6271500 C-A-GACCATCAGCAACCGTCTCGCACTCTATAGTCTCATGTT-ACTCAGAGCTTCC-C-CGTTCTCCAGCAATATGAAGG--ACCAGATTGAATGGGCACCAGGGGGCCAGGCTGGCAGTGTCACCCAGGAAAGCC-TGGAAGAGGCTACATG-----G--GCTACCTGGCCCACTTGGGGAGG-AGGCCAGGACTGAGTCTTGTTTT----AACAGCAGCCCTGTGCCacaaca--ctgaactgggcagggaaagggtcaggtgtcc
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5151738 247 +   5160157 C-A-GACCATCAGCAACCGTCTCGCACTCTATAGTCTCATGTT-ACTCAGAGCTTCC-C-CATTCTCCAGCAATATGAAGG--ACTAGATTGAATGGGCACCAGGGGGCCAGGCTGGCAGTGTCACCCAGGAAAGCC-TGGAAGAGGCTACATG-----G--GCTACCTGGCCCACTCGGGGAGG-AGGCCAGGACTGAGTCTTGTTTT----GACAGCAGCCCTGTGCCacaaca--ctgaactgggcagggaaagggtcaggtgtcc
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7722173 247 +  58131712 C-C-GGCCATCAGCAACCCTCGCACACTCTATAGTCCCACATT-ACTCAGAGCTTCC-C-CATGCCCCAGCAGTATGAAGG--ACTAGACTGAATGGGCACCAGGGTACCAGGCTGGCAGTGCCACACAGGCAAGTG-GGGAAGAGGCTACATG-----G--GCTAACTGGCCCACTCAGGGAGG-AGGGCAGGACTGGGGATTGTCTT----GACAGCAGCCCTGTCCCACAACA--CTGAACTGGGCAGGGAAGGGGTCAGGTGTCC
i chlSab2.chr26             C 0 I 32488
s manLeu1.NW_012105520v1      1109628 248 +   1458659 C-CAGACCATCAGCAACCCTCTCACACCCTATAGTCCCATGTT-ACTCAGAGCTTCC-C-CGTGCCCCAGCAATAGGAAGG--ACTAGATTGAATAGGCACCAGGGGGCCAGGCTGGCAGTGTCACCCAGGAAAGCC-TGGAAGAGGCTACATG-----G--GCTACCTGGCCCACTCGGGGAGG-AGGCCAGGACTGAGTCTTGTCTT----GACAGCAGCCCTGTGCCacaaca--ctgaactgggcaggaaaggggtcaggtgtcc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       321263 247 +   4111199 C-A-GACCATCAGCAACCGTCTCGCACTCTATAGTCTCATGTT-ACTCAGAGCTTCC-C-CGTTCTCCAGCAATATGAAGG--ACTAGATTGAATGGGCACCAGGGGGCCAGGCTGGCAGTGTCACCCAGGAAAGCC-TGGAAGAGGCTACATG-----G--GCTACCTGGCCCAGTTGGGGAGG-AGGCCAGGACTGAGTCTTGtctt----gacagcagccctgtgcgacagca--ctgaactgggcagggaaggggtcaggtgtcc
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114239686 245 - 132174527 C-A-GGCCCCCAGTGACCCTCTCGCACTCTACAGCCTCATGTG-ACTCAGAGCTGCC-C-TGCACCCCAGCAATATGAAGG--ACTAGACTGAATGGCCACCA-GGGGCCAGGCCGGCAGTGCCACCCAGGAAAGCC-GAGAAGAGGCTACGTG-----G--GCTACCTGGCCCATTTGGGGAGG-AAGGCAGGACTGGGTATTGTCTT----GACAGCAGGCCTGTCCCacaaca--ctgaa-tgggcagagaaggggtcaggtgtcc
i calJac3.chr10             I 1 C 0
s saiBol1.JH378276            2894430 246 +   3282555 C-A-GGCCATCAGCGACCCTGTCACACTCTACAGCCCCACGTG-ACTCAGAGCTGCC-C-CGCGCCCCAGCAATATGAAGG--ACTAGACTGAATGGCCACCAGGGGGCCAGGCTGGCAGTGCCACCCAGGAAAGCC-GGGAAGAGGCTGCATG-----G--GCTACCTGGCCCATCTGGGGAGG-AAGGCAGGACTGGGTATTGTCTT----GACAGCAGCCCTGTCCCacaaca--ctgaa-tgggcagggaaggggtcaggtgtcc
i saiBol1.JH378276          I 1 C 0
s cebCap1.NW_016107979v1       846853 245 +   1024465 C-A-GGCCATCAGCGACCCTCTCGCACTCTACAGCCTCATGTG-ACTCAGAGCTGCC-C-CACGCCCCAGCAATATGAAGG--ACTAGACTGAATGGCCACCG-GGGACCAGGCTGGCAGTGCCACCCAGGAAAGCC-GGGAAGAGGCTACGTG-----G--GCTACCTGGTCCACTTGGGGAGG-AAGGCAGGACTGGGTGTTGTCTT----GACAGCAGCCCTGTCCCCcaaca--ctgaa-tgggcagggaaggggtcaggtgtcc
i cebCap1.NW_016107979v1    I 5 C 0
s aotNan1.NW_018511953v1      2766725 245 -   3745603 C-A-GGCCATCAGCGACCCTCTCGCACTCTACAGCCTCATATG-ACTCAGAGCTGCC-C-CACACCCCAGCAATATGAAGG--ACTAGACTGAATGGCCACCA-GGGTCCAGGCTGGCAGTGCCACCCAGGAAAGCC-GGGAAGAGGCTACATG-----G--GCTACCTGGCCCACTTGGGGAGG-AAGACAGGACTGGGTATTGTCTT----GACAGCAGCCCTGTCCCGcaaca--ctgaa-tgggcagggaaggggtcaggtgtcc
i aotNan1.NW_018511953v1    I 1 C 0
s otoGar3.GL873530            8739284 254 -  36342412 T-A-GGCTGTCAGTGACCCTCCCACTCCTAACTGTACCACATTAACTCAGAGCTTCCTC-CACACCCCAGCAGTGTAAAGG--CATAGACTGAATGGCCACCAGGGGGCCAGGCTGGCAGTGCCACCCAGGGAAGCTGGGGGAAAGGCTACGTGG--CAG--ACACCCTCCCCTACTCAGGGA-G-AGACCAGGACTGGGCAATGTCTT----GACAGTGCCACTGTCCCacaacactctgaactgggcagggcagggatcaggtgtcc
i otoGar3.GL873530          I 1 C 0
s mm10.chr9                  56894121 249 + 124595110 C-A-AAGCCACGGTGCCCCTCCCCCACCCAGCAG-CACAC----ACACACCCCCCCC-C-CATGCTCCAGTAACACGAAGGACACAAGGCTG--TGGCCACCAGGGGGCCAGACTGGCAGTGCCACCCAAGAAGGCT-GGAAAGAGGCTACGTGGCACAG--ACACCCTCCTCCCCTGGCAGAGGTCAGGCAGCAGTAGGCAGTGGATTGACAGACAGTACCACTGCCCTTCAAGA--C---ACTGGGC-TAGAAGGGCTCAGGTAACC
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1743211 229 -  40214260 C-A-GGCCTTTGGGGTTCCTCCC------------CCCAC----CCACGGAGCTTTC-CGCGCACCCCAACAAGATG--GG--ATGAAAGGGAGTGGCCAGCAGGGGGCCAGGCTGGCAGTGCCACCCAGGGAAGCT-GGGAAATGGCTTCGTG-----GCAGAGACTTTGTCC----TGGCTTG-GGGGCAGGACTGGGTAGTGTCTC----GACAGCACCACTGTCCTGCCGTA--Ttgagttgggtggggcagggatcgggtgtcc
i canFam3.chr30             C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=705507.000000
s hg38.chr15_KI270850v1_alt    260526 107 +    430880 tcatttttcagataagaaaactgaagctcccagagggca-ggtaaatgtattcagagcacatggcgagtaagaggcaaatc------------ttctgccag---caagtccaggattttttt
s gorGor5.CYUI01015946v1       359076 107 +    378907 tcatttttcagataagaaaactgaagctcctggagggca-ggtaaatgtattcagagcacatggcgagtaagaggcaaaac------------ttctgccag---caagtccaggattttttt
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62604896 107 + 169600520 ccacttttcagataaggaaactgaagctcatggagggca-ggtaactgtattcagagcacatggtgagtaagagacacaac------------ttctgcctg---caagtctaggatttcctt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106525293 107 - 171882078 ccacttttcagataaggaaactgaagctcatggagggca-ggtaactgtattcagagcacatggtgagtaagagacacaac------------ttctgcctg---caagtctaggatttcctT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6259164 107 -   6271500 ccacttttcagataaggaaactaaagctcatggagggca-ggtaactgtattcagagcacatggtgagtaagagacacaac------------ttctgcctg---caagtctaggatttcctT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5151985 107 +   5160157 ccacttttcagataaggaaactaaagctcatggagggca-ggtaactgtattcagagcacatggtgagtaagagacacaac------------ttctgcctg---caagtctaggatttcctt
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7754908 108 +  58131712 ccatttttcagataaggaaacggaggctcttggagggcagggtaactttatttagaacacatggcgagtaagaggcaaaac------------ttctgcctg---cgagtccaggatttcctT
i chlSab2.chr26             I 32488 C 0
s manLeu1.NW_012105520v1      1109876 107 +   1458659 ccacttttcagataaggaaactgaagctcatggagggca-ggtaactgtattcagagcacatggccggtaagaggcacaac------------ttctgcctg---ccagtctacgatttcctt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       321510 107 +   4111199 ccacttttcacataaggaaactgaagctcatggagggca-agtaactgtattcagagcacatggcgagtaagaggcacaac------------ttctgcctg---caagtctaggatttcctt
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114239931  95 - 132174527 ccatttttcagatacagaaatggaggctcatggagggca-agtgcct------------catggtaagtaagaggcaaaac------------ttctgcctg---caagtctaggatgtcctt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2894676 107 +   3282555 ccatttttcagatacagaaatggaggctcgtggagggca-ggtaacgttactcagagcacatggtgagtaacaggcaaaac------------ttctgcctg---caagtctaggatttcctt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       847098 107 +   1024465 ccatttttcagatacagaaatggaggcttgtggagggca-agtaacgttattcagagcacatggtgagtaagaggcaaaac------------ttctgcctg---caagtccaggatttcctT
i cebCap1.NW_016107979v1    C 0 C 0
s aotNan1.NW_018511953v1      2766970 103 -   3745603 ccatttttcagatacagaaatggaggctcgcggaaggca-ggtaacgttattcagagcacatg----gtaagaggcaaaac------------ttctgccta---caagtctaggatttcctt
i aotNan1.NW_018511953v1    C 0 C 0
s otoGar3.GL873530            8739538  80 -  36342412 ccattgtgcaaagaaggaaaccaaggaccacagaggtca-ggtaactttattcagagcacacagctaataagaggcaaagc------------------------------------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56894370  99 + 124595110 TCAGTTTGTAGATAAAGAAGT----GCATATGCAGTCTG-GTGACTTTTATTCAGTAT-CATGGCTCGTAAGAAGCAAGAC------------------CAGGATTAAGCCTTGAGTTCCCTT
i mm10.chr9                 C 0 C 0
s canFam3.chr30               1743440 116 -  40214260 -cgttttgcagataaggaaactgaggcttacggaggtca-ggcgaccgt--ccagagcatgtggtcggtaagaggcaaaaccaggattccggctgctaacta---ctagtccagGCCtttttt
i canFam3.chr30             C 0 n 0
e dasNov3.JH572216             208464   0 -   1040364 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=680146.000000
s hg38.chr15_KI270850v1_alt    260633 107 +    430880 caccagaggacattgcttGGTCCCCAGAGCTCAGGACCCTGTGTTTTGTCTCACTC----------CCACCCACA-GAGCTCC----TGTATCCAGGCATCA-----ACTCCAACTCCcactcctgg
s gorGor5.CYUI01015946v1       359183 107 +    378907 caccagaggacattgcttGCTCCCCAGAGCTCAGGACCCTGTGTTTTGTCTCACTC----------CCACCCACA-GAGCTCC----TGTATCCAGGCATCA-----ACTCCAACTCCcactcctgg
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62605003 107 + 169600520 caccagaggacactgcttGCTCCCCAGAGCTCAGGACCCTGTGTTTTGTTTCACTC----------CCACCCACA-GAGCTCC----CGTATCCAGGCATCA-----GCTCCAACTCCcactcctgg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106525400 107 - 171882078 CACCAGAGGACACTGCTTGCTCCCCAGAGCTCAGGACCCTGTGTTTTGTTTCACTC----------CCACCCACA-GAGCTCC----CGTATCCAGGCATCA-----GCTCCAACTCCcactcctgg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6259271 107 -   6271500 CACCAGAGGACACTTCTTGCTCCCCAGAGCTCAGGACCCTGTGTTTTGTTTCACTC----------CCACCCACA-GAGCTCC----CGTATCCAGGCATCA-----GCTCCAACTCCcactcctgg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5152092 107 +   5160157 caccagaggacactgcttGCTCCCCAGAGCTCAGGACCCTGTGTTTTGTTTCACTC----------CCACCCACA-GAGCTCC----CGTATCCAGGCATCA-----GCTCCAACTCCcactcctgg
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7755016 107 +  58131712 CACCGGAGGACACTGCTTGCTCCCCAGAGCTCAGGACCCTGTGTTTTGTCTCACTC----------CCACCCACA-GAGCTCC----TGTATCCAGGCATCA-----GCTCCCACTCCCACTCCTGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1109983 107 +   1458659 caccagaggacactgcttgctccccaGAGCTCAGGACCCTGTGTTTTGTTTCACTC----------CCATCCACA-GAGCTCC----CGTATCCAGGCATCA-----GCTCCAACTCCcactcctgg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       321617 107 +   4111199 caccagaggacactgcttGCTCCCTGGAGCTCAGGACCCTGTGTTTTGTTTCACTC----------CCACCCACA-GGGCTCC----TGTATCCAGGCATCA-----GCTCCAACTCCcactcctgg
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114240026 106 - 132174527 caccggaggacactgcttGCTCCC-GGAGCTCAGGACCCTGTGTTGTGTCTCACTC----------CCACCCGCA-GAGCTCC----TGTATCCAGGCATCA-----GCTCCCACTCCCACTCCTGG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2894783 106 +   3282555 cgccagaggacactgctcactccC-GGAGCTCAGGACCCTGTGTTGTGTCTCACTC----------CCACCCACA-GAACTCC----TGTATCCAGGCATCG-----GCTCCCACTCCCACTCCCGG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       847205 106 +   1024465 CGCCGGAGGACACTGTTCGCTCCC-AGAGCTCAGGACCCTGTGCTGTGTCTCACTC----------CCACCCACA-GAGCTCC----TGTATCCAGGCATCA-----GCTCCCACTCCCACTCCTGG
i cebCap1.NW_016107979v1    C 0 I 51150
s aotNan1.NW_018511953v1      2767073 106 -   3745603 cgccggaggacactgcttGCTCCC-AGAGCTCAGGACCCTGTGTTGTGTCTCACTC----------CCACCCACA-GAGCTCC----TGTATCCAGGCATCA-----GCTCCCACTCCCACTCCTGG
i aotNan1.NW_018511953v1    C 0 N 0
s otoGar3.GL873530            8739618  34 -  36342412 ----------caaggtttggtgcctgtagctcag-----tgagt------------------------------a-gggc-----------------------------------------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56894469 120 + 124595110 CACCTAAGGATACTG-----TCCCCGCACCT--GGCCCGAGTTTTGCCTTTTGCTCGCTAGGGCCTTCTCGTACAGGAGCACCAACAGGCAGCCAGGTGTCACGCTGACCTCCACCACCACTGCTGG
i mm10.chr9                 C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=15836.000000
s hg38.chr15_KI270850v1_alt    260740 3 +    430880 agg
s gorGor5.CYUI01015946v1       359290 3 +    378907 agg
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62605110 3 + 169600520 agg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106525507 3 - 171882078 agg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6259378 3 -   6271500 agg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5152199 3 +   5160157 agg
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7755123 3 +  58131712 GGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1110090 3 +   1458659 agg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       321724 3 +   4111199 agg
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114240132 3 - 132174527 GGG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378276            2894889 3 +   3282555 GGG
i saiBol1.JH378276          C 0 N 0
s otoGar3.GL873530            8739652 1 -  36342412 --g
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56894589 3 + 124595110 GGG
i mm10.chr9                 C 0 C 0
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       847311 51150 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902 0 -  26350515 C

a score=6228.000000
s hg38.chr15_KI270850v1_alt    260743 1 +    430880 c
s gorGor5.CYUI01015946v1       359293 1 +    378907 c
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62605113 1 + 169600520 c
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106525510 1 - 171882078 c
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6259381 1 -   6271500 c
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5152202 1 +   5160157 c
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7755126 1 +  58131712 C
i chlSab2.chr26             C 0 T 32700
s manLeu1.NW_012105520v1      1110093 1 +   1458659 c
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       321727 1 +   4111199 t
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10             114240135 1 - 132174527 C
i calJac3.chr10             C 0 I 61784
s saiBol1.JH378235            5626366 1 -   6062622 c
i saiBol1.JH378235          N 0 C 0
s otoGar3.GL873530            8739653 1 -  36342412 c
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56894592 1 + 124595110 C
i mm10.chr9                 C 0 C 0
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       847311 51150 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902 0 -  26350515 C

a score=25677.000000
s hg38.chr15_KI270850v1_alt    260744 9 +    430880 cgaggcagg
s gorGor5.CYUI01015946v1       359294 9 +    378907 cgaggcagg
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62605114 9 + 169600520 ggaggtggg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106525511 9 - 171882078 ggaggtggg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6259382 9 -   6271500 ggaggtggg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5152203 9 +   5160157 ggaggtggg
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1110094 9 +   1458659 ggaggtggg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       321728 9 +   4111199 ggaggtggg
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5626367 9 -   6062622 tgaggtggg
i saiBol1.JH378235          C 0 C 0
s otoGar3.GL873530            8739654 6 -  36342412 ---catggc
i otoGar3.GL873530          C 0 C 0
s mm10.chr9                  56894593 9 + 124595110 AGGGGAGGG
i mm10.chr9                 C 0 N 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       847311 51150 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7755127 32700 +  58131712 T
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902 0 -  26350515 C

a score=702049.000000
s hg38.chr15_KI270850v1_alt    260753 226 +    430880 aggatcacttgagcccaggagttcgagaccagcctgggccacatagtgagaccttgtctccacacaaaaattttaaa-aatagctgggcttggtggtggcatgtgcctgtagtcctagctactcgagaggctgacgttggaggatcactttgagcccaggaggtggaggctgcagtgagcagtcat-----cactgtactccagcc-tggtgacagagcgagaccctatcACC
s gorGor5.CYUI01015946v1       359303 224 +    378907 aggatcacttgagcccaggagttcgagaccagcctgggccacatagtgagacc--gtctccacacaaaaatttaaaa-aatagctgggcttggtggtggcatgtgcctgtagtcctagctactcgagaggctgacgttggaggatcactttgagcccaggaggtggaggctgcaatgagcagtcat-----cactgtactccagcc-tggtgacagagcgagaccctatcACC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62605123 226 + 169600520 aggatcacttgagcccaggagttccataccatcctcggcaacatagtgagaccttgtctctacacaaaaattttaaa-aatagctgggcttggtggtggcacgtgactgtagtccgagctactcgagaggctgacatgggaggatcactttgatcccaggaggttgaggctgcagtgagcagtgat-----cactgtactccagcc-tggtgacagagcgagaccctatcACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106525520 226 - 171882078 aggatcacttgagcccaggagttccataccatcctcggcaacatagtgagaccttgtctctacacaaaaattttaaa-aatagctgggcttgatggtggcacgtgactgtagtccgagctacttgagaggctgacattggaggatcactttgatcccaggaggttgaggctgcagtgagcagtgat-----cactgtactccagcc-tggtgacagagcgagaccctatcACC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6259391 226 -   6271500 aggatcacttgagcccaggagttccataccatcctcggcaacatagtgagaccttgtctctacacaaaaattttaaa-aatagctgggcttggtggtggcacgtgactgtagtccgagctactcgagaggctgacatgggagggtcactttgatcccaggaggttgaggctgcagtgagcagtgat-----cactgtactccagcc-tggtgacagagcgagaccctatcACC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5152212 226 +   5160157 agaatcacttgagcccaggagttccataccatccttggcaacatagtgaaaccttgtctctacacaaaaattttaaa-aatagctgggcttggtggtggcacgtgactgtagtccgagctactcgagaggctgacattggaggatcactttgatcccaggaggttgaggctgcagtgagcagtgat-----cactgtactccagcc-tggtgacagagggagaccctatcACC
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1110103 226 +   1458659 aggatcacttgagcctaggagttccataccagccttggcaacatagtgagaccttgtctgtacacaaaacttttaaa-aatagctgggcttgatggtggcacgtgactgtagtccgagctactcgagaggctgacattggaggatcactttgagcccaggaggttgaggctgtagtgagcagtgat-----cactgtactccagcc-tggtgacagagcgagaccctatcACC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       321737 226 +   4111199 aggatcacttgagcccaggagttccatgccaccctcggcaagatagtgagaccttgtctctacacaaaaaatttaaa-aatagctgggcttggtggtggcacgtgactgtagtcctagctactcgagaggctgacattggaggatcactttgagcccaagaggttgaggctgcggtgagccgtgat-----cactgtactccagcc-tggtgacagagcgagaccctatcACC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5626376 227 -   6062622 aggatcacttgagcccaggagttcaagactattctgggcaacacagtgagactttgtctctacataaatattttaaagaatagctgggcttggtagtagcacgtgcctgtagtcctagctactggagaggctgacattggaagatcactttgagcccaggaagttgaagat--agtaagtggtcatgtcgccactgtactccagcc-tggcgacagagggagaccctatc---
i saiBol1.JH378235          C 0 C 0
s otoGar3.GL873530            8739660 200 -  36342412 aggtttgagtctggcctggacttgttaaaca-----------atagtgacaact---------gcaacca----aaa-aatagccaggc---attgtggcaggcgcctgtagtcccacctacttgagaggctgaggcaagagaatcgc-ttgagcccaa-aagttgaggttgctgtaagctgtgat---gccacaacactctacccagggtgacagcttgagactctgtctcc
i otoGar3.GL873530          C 0 n 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       847311 51150 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7755127 32700 +  58131712 T
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=1986861.000000
s hg38.chr15_KI270850v1_alt    260979 758 +    430880 GCCCCCCGCCCCACCAAAAAA---AA------A-CTGAGTAGACAGGTGTCCTCTTGGCATGATAAGTCTTAAGTCCCCTCCCAGATCtgtgacatttgacaggtgtcttttcctctgga-cctcggtgtccccatctgagtgagaaaa-ggcagtgggGAGGTGGATCTTCCAGTCGAAGCGGTATAGAAGCCC-GTGTGAAAAGCCATACTCCAAGGGGCTCCAAGTCCAGCGCACAGTCCCAGAAGGGCCCAGCAAGGCAGCCAGGGCGGCACAGGCACC----AGGTCCCAACCTTCTTCCCTGTTTGCCCACTCTCAGACCCCGGAGTTCATCATCTCGGAGCCGCTGGCCAATATGTACTCATGTGGGAACCAGAACACACTGATGGAGGAGTTGGCAGAGCAGGCACAGCAGCATGACGAGATGCTGCACATGCACCACGCGCTGAAGGAGGCGCTCAGCATCATCGGTGACATCAACAGGACCACTGTCACCATGCCCATGCCCCCGCCCGTGGACGACACCTGGTTGT-----CAGAGCATCCCTGACGAACACAGGTACCAAAGACTGCCCCCCACGGCCCCAAAATCCCCCA-CCCGGGATGC-CCAGAGGAGTGCCCTGG--GGGCAAGTGGCACACCC-CCTCACCGGGGTGGCTCCCACCTGGAGTGACGGGGGGA---------------------------------GCTTGACAAGGAGCACTGGCTGCCGGGGGGGGGGGGGGTGTGTGGAGCTGGGATGTTCTCGCTGCTGGGGGCGGGGCTTAAGCTCTGGCAACCGC
s gorGor5.CYUI01015946v1       359527 754 +    378907 GCCCCCCGCCCTGCCAAAAAA---AA------AACTGAGTAGACAGGTGTCCTCTTGGCGTGATAGGTCTTAAGTCCCCTCCCAGATCTGTGACATTTGACAGGTGTCTTTTCCTCTGGA-CCTCGGTGTCCCCATCTGAGTGAGAAAA-GGCAGTGGGGAGGTGGATCTTCCAGTCGAAGCGGTATAGAAGCCC-GTGTGAAAAGCCATACTCCAAGGGGCTCCAAGTCCAGTGCACAGTCCCAGAAGGGCCCAGCAAGGCAGCCAGGGCGGCACAGGCACC----AGGTCCCAACCTTCTTCCCTGTTTGCCCACTCTCAGATCCCGGAGTTCATCATCTCGGAGCCGCTGGCCAATAAGTACTCGTGTGGGAACCAGAACACACTGATGGAGGAGTTGGCAGAGCAGGCACAGCAGCACGACGAGATGCTGCACATGCACCACGCGCTGAAGGAGGCGCTCAGCATCATCGGTGACATCAACAGGACCACTGTCACCATGCCCATGCCCCCGCCCGTGGACGACACCTGGTTGCAGGTGCAGAGCATCCCGGACGAACACAGGTACCAGAGACTGCCCCCCACGGCCCCAAAATCCCCCA-CCCGGGATGC-CCAGAGGAGTGCCCTGG--GGGCAAGTGGCACACCC-CCTCACCGGGGTGGCTCCCACCTGGAGTGACGGGGGGA---------------------------------GCTTGACAAGGAGCACTGGCTGCGGGGCGGGG----------TGGAGCTGGGATGTTCTCGCCGCTGGGGGCGGGGCTTAAGCTCCGGCAACCGC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62605349 752 + 169600520 ACCCCCACCCCGGCCAAACAA---AACAAC--AACTGAAAAGACAAGTTTCCTATTGGCATGATAGGTCCTGAGTCCCCTCCCAGATCAGTAACGTGGGACAGGTGTCTTTTCCTCTGGACCTTCGGTGTCCCCATCTGAGTGAGAAAA-GGCAGTGGGGAGGTGGATCTTCCAGTTGAAGCGGTGTA-AAGCCG-GTGTGAAAAGTCATACTACAAGGGGCTCCAAGTCCAGCGCACCGTCCCAACAGGGCCCAGCACGGCAGCCAGTGCGGCACAGGCATC----AGGTCCCGACCTTCTTCCCCGATTGCCCACTCTCAGACCACGGAGT---TCATATTGGAGCTGCTGGCCAGTCTGTACTCATGTGGGGCCCAGAACACACTGGTGGAGCAGTTGGCAGAAGAGGCACAGCGGCGCGACGAGATGCTGCGCATGCACCACATGCTGAAGGAGGTACTCACCATCATCAGGGACATCAACAAGACCACCGTCAGCCTGCCCCTAAGCCTGCATGTGGACGACTCCTGGCTGCAGGTGCAGAGCCTCCCGGACGAACGCAGAGACCAGGGCCGG--CCCCACGGTCCCAAAGTCCCCCAGCCTGGGCCGC-CCAGAGGAGTGCCAAGG--GGGC-AGTGGCGTGGTC-CCTCACCAGGGTGGCTGCTACCTGGAGTGAGGGGCGGA---------------------------------GCTTGCCGAGGAGCACTggctgcggggcgggg----------tggagctgggctgttggtgctgct-ggggcggggctTAAACTCTGGCGACCAC
i rheMac8.chr7              C 0 I 33
s macFas5.chr7              106525746 755 - 171882078 ACCCCCACCCCGGCCAAACAA---AACAAC--AACTGAAAAGACAAGTTTCCTATTGGCATGATAGGTCCTGAGTCCCCTCCCAGATCAGTAACGTGGGACAGGTGTCTTTTCCTCTGGA-CTTCGGTGTCCCCATCTGAGTGAGAAAA-GGCAGTGGGGAGGTGGATCTTCCAGTTGAAGCGGTGTAGAAGCCA-GTGTGAAAAGCCATACTACAAGGGGCTCCAAGTCCAGCGCACCGTCCCAACAGGGCCCAGCACGGCAGCCAGTGCGGCACAGGCATC----AGGTCCCGACCTTCTTCCCCGATTGCCCACTCTCAGACCACGGAGTTCATCATCTTGGAGCTGCTGGCCAGTCTGTACTCATGTGGGGACCAGAACACACTGGTGGAGCAGTTGGCAGAAGAGGCACAGCGGCGCGACGAGATGCTGCGCATACACCACATGCTGAAGGAGGTACTCACCATCATCGGGGACATCAACAAGACCACCGTCAGCCTGCCCCTAAGCCTGCATGTGGACGACTCATGGCTGCAGGTGCAGAGCCTCCCGGACGAACGCAGAGACCAGGGCCGG--CCCCACGGTCCCAAAGTCCCCCAGCCTGGGCCGC-CCAGAGGACTGCCAAGG--GGGC-AGTGGCGTGGTC-CCTCACCAGGGTGGCTGCTACCTGGAGTGAGGGGCGGA---------------------------------GCTTGCTGAGGAGCACTGGCTGCGGGGCGGGG----------TGGAGCTGGGCTGTTGGTGCTGCT-GGGGCGGGGCTTAAACTCTGGCGACCAC
i macFas5.chr7              C 0 I 2
s macNem1.NW_012011056v1      6259617 752 -   6271500 ACCCCCACCCCGGCCAAACAA---AACAAC--AACTGAAAAGACAAGTTTCCTATTGGCATGATAGGTCCTGAGTCCCCTCCCAGATCAGTAACGTGGGACAGGTGTCTTTTCCTCTGGA-CTTCGGTGTCCCCATCTGAGTGAGAAAA-GGCAGTGGGGAGGTGGATCTTCCAGTTGAAGCGGTGTAGAAGCCA-GTGTGAAAAGCCATACTACAAGGGGCTCCAAGTCCAGCGCACCGTCCCAGCAGGGCCCAGGACGGCAGCCAGTGCGGCACAGGCATC----AGGTCCCGACCTTCTTCCCCGATTGCCCACTCTCAGACCACGGAGT---TCATATTGGAGCTGCTGGCCAGTCTGTACTCATGTGGGGCCCAGAACACACTGGTGGAGCAGTTGGCAGAAGAGGCACAGCGGCGCGACGAGATGCTGCGCATGCACCACATGCTGAAGGAGGTACTCACCATCATCAGGGACATCAACACGACCACCGTCAGCCTGCGCCTAAGCCTGCATGTGGACGACTCCTGGCTGCAGGTGCAGAGCCTCCCGGACGAACGCAGAGACCAGGGCCGG--CCCCACGGTCCCAAAGTCCCCCAGCCTGGGCCGC-CCAGAGGAGTGCCAAGG--GGGC-AGTGGCGTGGTC-CCTCACCAGGGTGGCTGCTACCTGGAGTGAGGGGCGGA---------------------------------GCTTGCCGAGGAGCACTGGCTGCGGGGCGGGG----------TGGAGCTGGGCTGTTGGTGCTGCT-GGGGCGGGGCTTAAACTCTGGCGACCAC
i macNem1.NW_012011056v1    C 0 I 33
s cerAty1.NW_012001384v1      5152438 748 +   5160157 ACCCCCACCCCTGCCAAACAA---AACAAC--AACTGAAAAGACAAGTTTCCTATTGGCATGATAGGTCCTGAGTCCCCTCCCAGATCAGTAACGTGGGACAGGTGTCTTTTCCTCTGGA-CCTCGGTGTCCCCATCTGAGTGAGAAAA-GGCAGTGGGGAGGTGGATCTTCCAGTTGAAGCGGTGTAGAAGCAG-TTGTGAAAAGCCATACTCCAAGGGGCTCCAAGTCCAGCACACTGTCCCAGCAGGGCCCAGCACGGCAGCCAGTGCCGCACAGGCATC----AGGTCCCGACCTTCCTCCCCGATTGCCCACTCTCAGACCACGGAGT---TCATATTGGAGCTGCTGGCCAGTCTGTACTCATGTGGGGACCAGAACACACTGGTGGAGCAGTTGGCAGAAGAGGCACAGCGGTGCGACGAGATGCTGCGCATGCACCACATGCTGAAGGAGGT----ACCATCATCAGGGACATCAACACGACCACCGTCAGCCTGCCCCTAAGCCTGCATGTGGACGACTCCTGGCTGCAGGTGCAGAGCCTCCCGGACGAACGCAGAGACCAGGGCCGG--CCCCACGGCCCCAAAGTCCCCCAGCCTGGGCCGC-CCAGAGGAGTGCCAAGG--GGGC-AGTGGCGTGGTC-CCTCACCAGGGTGGCTGCTACCTGGAGTGAGGGGCGGA---------------------------------GCTTGCCGAGGAGCACTggctgcggcgcgggg----------tggagctgggctgttggtgctgct-ggggcggggctTAAACTCTGGCGACCAC
i cerAty1.NW_012001384v1    C 0 I 8
s manLeu1.NW_012105520v1      1110329 756 +   1458659 ACCCCCACCCCCGCCAAACAA---AACAAC--AACTGAATAGACAAGTATCCTATTGGCATGATAGGTCCTGAGTCCCCTCGCAGATCAGTCACATGGTACAGGTGTCTTTTCCTCTGGA-CCTCGGTGTCCCCATCTGAGTGAGAAAA-GGCAGTGGGGAGGTGGATCTTCCAGTTGAAACGGTGTAGAAGCCG-GTGTGAAAAGCCATACTACAAGGGGCTCCAAGTCCAGCGCACCGTCCCAGCAGGGCCCAGCATGGCAGCCAGTGCGGCACAGGCATC----AGGTCCCGACCTTCTTCCCCGATTGCCCACTCTCAGACCACGGAGTTCATCATCTTGGAGCTGCTGGCCAGTCTGTACTCATGTGGGGACCAGAACACACTGGTGGAGCAGTTGGCAGAAGAGGCACAGCGGCGCGACGAGATGCTGCGCATACACCACATGCTGAAGGAGGTACTCACCATCATCGGGGACATCAACAAGACCACCGTCAGCCTGCCCGTGAGCCTACATGTGGACGACTCCTGGCTGCAGGTGCAGAGCGTCCCGGACGAACGCAGATACCGGGGCCGG-CCCCCACGGCCCCAAAATCCCCCAACCTGGGCCTC-CGAGAGGAGTGCCAAGG--GGGC-AGTGGCGTGGCC-CCTCACCAGGGTGGCTGCCACCTGGAGTGAGAGGCGGA---------------------------------GCTTGCCGAGGAGCAGTGGCTGCGGGGCGGGG----------TGGAGCTGGGCTGTTGGTGCTGCT-GGGGCGGGGCTTAAACTCTGGCGACCAC
i manLeu1.NW_012105520v1    C 0 I 2
s colAng1.NW_012116021v1       321963 757 +   4111199 ACCCCCACCCCCGCCAAACAAAACAACAAC--AACTGAATAGACAAGTATCCTATTGGCGTGATAGGTCCTGAGTCCCCTCTCAGATCAgtaacattggacaggtgtcttttcctctgga-cctcggtgtccccatctgAGTGCGAAAA-GGCAGTGGGGAGATGCATCTTCCCATTGAAGTGATGTAGAAGCCG-GAGTGAAAAGCCATACTCCAAGGGGCTCCAAGTCCAGC-CACCGTCCCAGCAGGGTCCAGCACGGCAGCCAGTGCGGCACAGGCATC----AGGTCCCCACCTTATTCCCCGATTGCCCACTCTCAGACCACAGAGTTCATCATCTTGGAGCTGCTGGCCAGTCTGTACTCATGTGGGGACCAGAACACACTGGTGGAGCAGTTGGCAGAAGAGGCACAGCGGCGCGACGAGATGCTGCGCATGCACCACATGCTGAAGGAGGTGCTCACCATCATCTGGGACATCAGCACGACCACCATCAGCCTGCCGGTGAACCTGCATGTGGACAACTGCTGGCTGCAGGTGCAGAGCGTCCCAGACGAACGCAGATACCAGGGCCGG-CCCCCACGGCCCCAAAGTCCCCCAGCCT-GGCCGC-CGAGAGGAGTGCCAAGG--GGGC-AGTGGCGTGGCC-CCTCACCAGGGTGGCTCCCACCTGGAGTGAGAGGCGGA---------------------------------GCTTGCCAAGGAGCACTggctgcggggcgggg----------tggagctgggctgttggtgctgct-ggggcggggctTAAACTCTGGCGACCTC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5626603 768 -   6062622 -------------tcaaagga---aaaaacaaaactgagtagacaggtggtctggtggcatgataggtcctaagtcccctcccagatctgtgacctaggtcaggtgacttttcctctgga-cctcagtgtacccatctgaatgagaaaagggcggtggGGAGTCAGATCTTCCAGTCTAAGCAGTGTAGGAGCCGCGTCTGAAAAGCCATACTCT---GGGCTTCAAGTCCAGCGCA-----------------GTCGGGGCGGCCAGGGCGGCACAAGGGATGGGGAGGTCCCACCTTCCTTCCCTCTTTGCCCACTCGCAGACCAAGGAGTTCATCTTCTCGGAGCTGCTGGCCAACCTGTACTCATGTGGGGACCAGAACACGCTCATGGAGGAGTCGGCGGAGCAGGCACAGCGGCGCGATGAGATGCTGCGCATGTACCACGCGCTGAAGGAGGCGCTCAGCATCATCGGCGACATCAATACGACCACCGTCAGCACGCCTATGCCCCCGCCCGTGGACGACTCCTGGCTGCAGGTGCAGAGCGTACCGGCCGGACGCAGGTACCAGGGCCGG-CCCCCACGGCCCCAAAGCCCCCCAGCCCGGGGCCCGCGGGATGAGTTCCGGGACCGGGC-AGTGGCGCGCCCGCGTCACCGGGGTGGCTCCCACCTGGAGCGAggggcggagcttagagagggcggggcttgctgcggggcggggcttgccgtggagcgctggctgcggggcgggg----------tggagctgggacg-tggcgccgctgggggcagggcTTAAGCTCCGGCGACCGC
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       847311 51150 +   1024465 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7755127 32700 +  58131712 T
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=437.000000
s hg38.chr15_KI270850v1_alt    261737 4 +    430880 CTTG
s gorGor5.CYUI01015946v1       360281 4 +    378907 CTTG
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106526503 2 - 171882078 --CA
i macFas5.chr7              I 2 I 29
s cerAty1.NW_012001384v1      5153194 2 +   5160157 --CT
i cerAty1.NW_012001384v1    I 8 I 23
s manLeu1.NW_012105520v1      1111087 2 +   1458659 --CG
i manLeu1.NW_012105520v1    I 2 I 29
s colAng1.NW_012116021v1       322720 4 +   4111199 ATTG
i colAng1.NW_012116021v1    C 0 I 29
s saiBol1.JH378235            5627371 4 -   6062622 CTCG
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       847311 51150 +   1024465 I
e otoGar3.GL873530            8739860 0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7755127 32700 +  58131712 T
e macNem1.NW_012011056v1      6260369 33 -   6271500 I
e rheMac8.chr7               62606101 33 + 169600520 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902 0 -  26350515 C

a score=266808.000000
s hg38.chr15_KI270850v1_alt    261741 100 +    430880 -----------------------------GGGTGTGGC-----------------------------CGGCACTGCGCT--------------------GGGGCGGGGTCGCCCATCTCTCCCCTCCCTGTG---------------CCTCCCAGGTCGCCCAAGTCCAGCGTCAGG-----ATGCCCAGG--CCCTGCC
s gorGor5.CYUI01015946v1       360285 129 +    378907 -----------------------------GGGTGTGGCAGGGAGGAGCTTCGGTGCATGGGTGTGGCCGGCACTGCGCT--------------------GGGGCGGGGCCGCCCATCTCTCCCCTCCCTGTG---------------CCTCCCAGGTGGCCCAAGTCCAGCCCCAGG-----ATGCCCAGG--CCCTGCC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62606134 130 + 169600520 -----------------------------GGGCGTGGC-----------------------------CGGCACTGGGCTGTGGCGGCGCCTCAG-----GGGGCGGAACCGCCTATGTCTCCTGTCCCTGTGCCTTGCTGCCTGTCGCCTTGCAGGTCGCCCAAGTCCAGCCCCGGG-----ATGCCCAGC--CCCCGCC
i rheMac8.chr7              I 33 C 0
s macFas5.chr7              106526534 130 - 171882078 -----------------------------GGGCGTGGC-----------------------------CGGCACTGGGCTGGGGCGGCGCCTCAG-----GGGGCGGAACCGCCTATGTCTCCTGTCCCTGTGCCTTGCTGCCTGTCGCCTTGCAGGTCGCCCAAGTCCAGCCCCGGG-----ATGCCCAGC--CCCCGCC
i macFas5.chr7              I 29 C 0
s macNem1.NW_012011056v1      6260402 130 -   6271500 -----------------------------GGGCGTGGC-----------------------------CGGCACTGGGCTGGGGCGGCGCCTCAG-----GGGGCGGAACCGCCTATGTCTCCTGTCCCTGTGCCTTGCTGCCTGTCGCCTTGCAGGTCGCCCAAGTCCAGCCCCGGG-----ATGCCCAGC--CCCCGCC
i macNem1.NW_012011056v1    I 33 C 0
s cerAty1.NW_012001384v1      5153219 128 +   5160157 -----------------------------GGGCGTGGC-----------------------------CGGCCCTGGGCTGGGGCGGCGCCT--G-----GGGGCGGAACCCCCCATGTCTCCTGTCCCTGTGCCTTGCTGCCTGTCGCCTTGCAGGTCGCCCAAGTCCAGCCCCGGG-----ATGCCCAGC--CCCCGCC
i cerAty1.NW_012001384v1    I 23 C 0
s manLeu1.NW_012105520v1      1111118 135 +   1458659 -----------------------------GGTCCTGGC-----------------------------CGGCACTGGGCTGGGACGGGGCCTCAGGGGGCGGGGCGGAGCCGCCCATTTCTCCTGTCCCTGTGCCTTGATACCTGTCGCCTTGCAGGTCGCCCAAGTCCAGCCCCGGG-----ATGCCCAGC--CCCCGCC
i manLeu1.NW_012105520v1    I 29 C 0
s colAng1.NW_012116021v1       322753 130 +   4111199 -----------------------------GGGCGTGGC-----------------------------CGGCACTGGACTGGGGCGGGGCCTC-------GGGGCGGAGCCGCCCATTTCTCCTGTCCCCGTGCCTTGCTGCCTGTCACCTTGCAGGTCGCCCAAGTCCAGCCCCGGG-----GTGCCCAGCCACCCTCCC
i colAng1.NW_012116021v1    I 29 C 0
s saiBol1.JH378235            5627375 165 -   6062622 GGGCGCGGTAGGGAGGGGCTTGCGTGCATGGGCGTGGC-----------------------------CTGCACTGGGCTGGGGCGGGGCCTCGGGG---TGGGCGGAGCCGCTCATCTGGCCTCTCCTTGTTCCTTGCTCCCTGTCGCCCT-CAGGTCGCCCACGTCCAGCCCCACGCCGCAGCGCCGAGC--CCCTGCC
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       847311 51150 +   1024465 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7755127 32700 +  58131712 T
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25711902   0 -  26350515 C

a score=89163.000000
s hg38.chr15_KI270850v1_alt    261841 54 +    430880 ATGTCCCTAGCCCGGCCTGGGTGGCAGGGCCCAGCTCCTGGGCGGCAGGACCCA-----------
s panTro5.chrY               25711902 32 -  26350515 ATGTCCCTAGCCCGGCCTGGGTGGCA----------------------GACCCA-----------
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       360414 33 +    378907 ATGTCCCTAGCCCGGCCTGGGTGGCA---------------------GGGCCCA-----------
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62606264 32 + 169600520 ATGTCCCCAGCCCAGCCTGGGTTGCG----------------------GGCCCG-----------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106526664 32 - 171882078 ATGTCCCCAGCCCAGCCTGGGTTGCG----------------------GGCCCG-----------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6260532 32 -   6271500 ATGTCCCCAGCCCAGCCTGGGTTGCG----------------------GGCCCG-----------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5153347 32 +   5160157 ATGTCCCCAGCCCAGCCTGGGTTGCG----------------------GGCCCG-----------
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1111253 31 +   1458659 ATGTCCCCAGCCCAGCCTGGGTTGCG----------------------GG-CTG-----------
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       322883 32 +   4111199 ATGTCCCCAGCCCAGCCTGGGTTGCG----------------------GGCCCG-----------
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5627540 43 -   6062622 GTGCCCCCAGCCCGGCCCGGATCGCG----------------------GGGCCCTGCTCCTGGGC
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       847311 51150 +   1024465 I
e otoGar3.GL873530            8739860  0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7755127 32700 +  58131712 T
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=707996.000000
s hg38.chr15_KI270850v1_alt    261895 188 +    430880 GCTCCTGGGCTTCCTCCTGCCGGGTCCGCCCTTGGGGAAGCG-TGCCCCATACCCTCCAGGCCAGAGGCTTCCCCTGATCCCTTTGGGCCCTA-CCCCCCT-GGTGCTCT-----------CGTGCCCCAGCCGGGGTCCCCAGGTAAGTAGGGGCTGAATGCGGCTGAAGAGGCCGCTGGACAGGCGTGGCCAGGAAGGAA
s panTro5.chrY               25711934 189 -  26350515 GCTCTTGGGCTTCCTCTTGCCAAGTCCACCCTTGGGGAAGCG-TGCCCTGTACCCTCCAGGCTAGAGGCTTCCCCTGATCCCTTCGGCCCCTA-CCCCGCTAGGTGCACT-----------CATGCCCCACCCGGGGTCTCCAGGTGAGTAGGGGCTGAATGCGGCCAAAGAGGCTGCTGGACGGGCGTGGCCGGGATGGAA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       360447 188 +    378907 GCTCCTGGGCTTCCTCCTGCCGGGTCCGCCCTTGGGGAAGCG-TGCCCCATACCCTCCAGGCCAGAGGCTTCCCCTGATCCCTTTGGGCCCTA-CCCCTCT-GGTGCTCT-----------CGTGCCCCAGCCGGGGTCCCCAGGTAAGTAGGGGCTGAATGCGGACGAAGAGGCCGCTGGACAGGCGTGGCCAGGAAGGAA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62606296 188 + 169600520 GCTTCTGGGCTTCCTCCTGCTGGGTCCGCCCTTGGGGAAGTGCCACCCCGTATCCTCCAGACCAGAGGCTTCCCCTGATCCCTTCGG-CCCTA-CTCGCCA-GGTGCTCT-----------CATGCCCCACTAGGGATCACCAAGTAAGTAGGAGCTGAAAGCAGCCAAAGAGGCCGCTGGAGGGGTGTGGCCGGGAAGGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106526696 188 - 171882078 GCTTCTGGGCTTCCTGCTGCTGGGTGCGCCCTTGGGGAAGTGCCACCCCGTATCCTCCAGACCAGAGGCTTCCCCTGATCCCTTCGG-CCCTA-CTCGCCA-GGTGCTCT-----------CATGCCCCACTAGGGATCACCAAGTAAGTAGGAGCTGAAAGCAGCCAAAGAGGCCGCTGGAGGGGTGTGGCCGGGAAGGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6260564 188 -   6271500 GCTTCTGGGCTTCCTGCTGCTGGGTGCGCCCTTGGGGAAGTGCCACCCTGTATCCTCCAGACCAGAGGCTTCCCCTGATCCCTTCGG-CCCTA-CTCGCCA-GGTGCTCT-----------CATGCCCCACTAGGGATCACCAAGTAAGTAGGAGCTGAAAGCAGCCAAAGAGGCCGCTGGAGGGGTGTGGCCGGGAAGGAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5153379 188 +   5160157 GCTTCTGGGCTTCCTGCTGCTGGGTGCGCCCTTGGGGAAGTGCCACCCCGTATCCTCCAGACCAGAGGCTTCCCCTGATCCCTTCGG-CCCTA-CTCGCCA-GGTGCTCT-----------CATGCCCCACTCGGGATCACCAAGTAAGTAGGGGCTGAAAGCAGCCAAAGAGGCCGCTGGAGGGGTGTGGCCGGGAAGGAA
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1      1111284 188 +   1458659 GCTTCTGGGCTTCCTCCTGCTGGGTCCGCCCTTGGGGAAGTGCCACCCCATATCCTCCAGACCAGAGGCTTCCCCTGATCCCTTCGG-CCCTA-CTCGCCA-GGTGCTCT-----------CATGCCCCACTCGGGATCACCAAGTAAGTAGGGGCTGAAAGCAGCCAAAGAGGCCGCTGGACTGGTGTGGCCGGGAAGGAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       322915 187 +   4111199 GCTTCTGGGCTTCCTCCTGCT-GGTCTGCCCTTGGGGAAGTGCCACCCCATATCCTCCAGACCAGAGACTTTCCCTGATCCCTTTGA-CCCTA-CTCCCCA-GGTGCTCT-----------CATGCCCCACTCGGGATCACCAAGTAAGTAGGGGCTGAAAGCAGCCAAAGAGGCCGCTGGACGGGTGTGGCCGGGAAGGAA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5627583 188 -   6062622 ----------CTCCGCCTGCTGGGTCCGCCCTGGGGGGGGCG-CCCCCCGTGCCCTCCAGGCCGGGGGCTTCCCCTGATCCCTTCGG-CCCTC-CCCCTCA-GGTGCCCTCGCGCCCCAACCGCGCCCCACCTGGGGTCCCCAGGTGAGTAGGGCCTGAATGCGGCGGCAGAGGCCGCCGGACGGGCGTGGCCGGGAGGGAA
i saiBol1.JH378235          C 0 C 0
s cebCap1.NW_016107979v1       898461 185 +   1024465 GCTCCTGGGCCTCTGCCTGCTGGGTCTGCCTTGGGGGAAGCG--CCCCTGTACCCTCCAGGCC-AGGGCTTCCCCTGACCCCTTTGG-CCCTCTCTCCACA-GGTGCCCT-----------CACACCCCGCCTGCGGTCCCCATGTGCGTAGAGGCTGAATGT-GTGGGAGAGGCTGGTGGACTGGCATGGCCAGGAGGGAA
i cebCap1.NW_016107979v1    I 51150 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7755127 32700 +  58131712 T
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=1439464.000000
s hg38.chr15_KI270850v1_alt    262083 304 +    430880 ATGGGACTGGATTCCAGAGCACCACATCTGGCCGCCAGAACTGGCCGTCTCCATCCAAGGCACTGGGACCATGGGTGCCGGA-----GCCACGTGTGGCCGAGGGCTGGCAGAGCCTGCCCCCCAGGGATCACTGAGTCCTGGAGGTGGTCGTTTTTGAGGAGGGGGCTGTGGGGCTCGTCCCACCTGCCGCCTTCTGTCCAGCACTTGCATGACACTTCCCTCTATTTTCACTCTTGGCGGCTG-CCCACACGTTGCATTTCTCTTCCTTTCTTCT---CGCTGT------------CCTCCATCCTCCATTCCGTCCAACTCC
s panTro5.chrY               25712123 290 -  26350515 ATGGGACTGGATTCCAGAGCATCAGACCTGGCCACC-------------TCCATCCAAGGCACTGGGACCATGGGTGCTGGA-----GCCATGTGTGGCCAAGGGCTGGCGGAGCCTGCCCCCCAGGGAGCACTGACTCCTGGAAGTGGTCGTTTTTGAGG---GGGCTGTGGGGCTTGTCCCACCTGCCCCCTTCTGTCCAGTACGTGCATGGTACTTCCATCTATTTTCACTCTTGGCAGCTG-CC-ACACTTTGCATTTCTCTTCCTTTCTTCTTCTCACTGT------------CCTCCATCCTCCATTCCGTCCAACTCC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       360635 316 +    378907 ATGGGACTGGATTCCAGAGCACCACATCTGGCCGCCAGAACTGGCCGTCTCCATCCAAGGCACTGGGACCATGGGTGCCGGA-----GCCACGTGTGGCCGAGGGCTGGCAGAGCCTGCCCCCCGGGGAGCACTGAGTCCTGGAGGTGGTCGTTTTTGAGGAGGGGGCTGTGGGGCTCGTCCCACCTGCCGCCTTCTGTCCAGCACTTGCATGACACTTCCCTCTATTTTCACTCTTGGCGGCCG-TCCACACTTTGCATTTCTCTTCCTTTCTTCT---CGCTGTCCTCCATCCTCCCCTCCATCCTCCATTCTGTCCAACTTC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62606484 302 + 169600520 ATGGGACTGGATTCCAGATCATCGGACCTGGCGGCAAGAACTGGCCGTCACCATCCAAGAAAC--GGACCGTGGCTGCCAGA-----GTCACGTATGGCCGAGGGCTGGCGGAGCCTGTCCCCCAGGGAGGGCTGAGTCCTGGAGGTAGTCGTTTTTGCGGAGAGGGCTGTGGGGCTCCTCCCACCTGCCCCCTTCTTTCCAGCACTTAGGTGGCACTTCCCTCTATTTTCACTCTTGGCGGCTG-CCCCCACGTTGCATCCCTCATCCTTTCTTCT---CGCCCT------------CCTCCATTCTCCATTCTGTGCAACTCC
i rheMac8.chr7              C 0 I 33
s macFas5.chr7              106526884 304 - 171882078 ATGGGACTGGATTCCAGAGCATCCGACCTGGCCGCAAGAACTGGCCGTCTCCATCCAAGAAACTGGGACCATGGCTGCCAGA-----GTCACGTGTGGCCGAGGGCTGGCGGAGCCTGTCCCCCAGGGAGGGCTGAGTCCTGGAGGTAGTCGTTTTTGAGGAGAGGGCTGTGGGGCTCGTCCCACCTGCCCCCTTCTTTCCAGCACTTAGGTGGCACTTCCCTCTATTTTCACTCTTGGTGGCCG-CCCACACGTTGCATCCCTCATCCTTTCTTCT---CGCCGT------------CCTCCATTCTCCGTTCTGTCCAACTCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6260752 303 -   6271500 ATGGGACTGGATTCCAGATCATCGGACCTGGCGGCAAGAACTGGCCGTCTCCATCCAAGAAACTGGGACCGTGGCTGCC-GA-----GTCACGTATGGCCGAGGGCTGGCGGAGCCTGTCCCCCAGGGAGGGCTGAGTCCTGGAGGTAGTCGTTTTTGCGGAGAGGGCTGTGGGGCTCCTCCCACCTGCCCCCTTCTTTCCAGCACTTAGGTGGCACTTCCCTCTATTTTCACTCTTGGCGGCTG-CCCCCACGTTGCATCCCTCATCCTTTCTTCT---CGCCCT------------CCTCCATTCTCCATTCTGTGCAACTCC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5153567 303 +   5160157 ATGGGACTGGATTCCAGAGCATCGGACCTGGCGGCAAGAACTGGCCGTCTCCATCCAAGAAACTGGGACCGTGGCTGCC-GA-----GTCACGTATGGCCGAGGGCTGGCGGAGCCTGTCCCCCAGGGAGGGCTGAGTCCTGGAGGTAGTCGTTTTTGCAGAGAGGGTTGTGGGGCTCCTCCCACCTGCCCCCTTCTTTCCAGCACTTAGGTGGCACTTCCCTCTATTTTCACTCTTGGCGGCCG-CCCACACGTTGCATCCCTCATCCTTTCTTCT---CGCCGT------------CCTCCATTCTCCATTCTGTGCAACTCC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7722427 290 +  58131712 ATGGGACTGGATTCCAGAGCACGGGGCCTGGCTGCCAGAACCGGCCCTCTCCTTCCAAGGCACTGGGACCCTGGATGCCGGA-----GCCGCGTG-----------TGGTGGAGCCTGCCCCTCAGGGAGCTCTGAGTCCCGGAGGTGGTCGTTTTTAGGGAGGGGGCTATGGGGCTCGTCCCACCTACCCCCTTCTTTCCAGCACTTACATGGTGCTTCCCTCTATTTTCACTCTTGGCGGCCGCCCCACACATTGCATtcctcctc----cttct---cgctgt------------cctccatcctccattccctccaactcc
i chlSab2.chr26             T 32700 C 0
s manLeu1.NW_012105520v1      1111472 304 +   1458659 ATGGGACTGGATTCCAGAGCATCCGACCTGGCTGCAAGAACTGGCCGTCTCCAGCCAAGACACTGGGACCATGGCTGCCGGA-----GTCACGTGTGGCCGAGGGCTGGCAGAGCCTGTCCCCCAGGGAGGGCTGAGTCCTGGAGGTAGTCGTTTTTGAGGAGAGGGCTATGGGGCTCGTCCCACCTGCCCCCTTCTTTCCAGCACTTAGGTGGCACTTCCCTCTATTTTCACTCTTAGTGGCCG-CCCACACGTTGCATCCCTCATCCTTTCTTCT---CGCCGT------------CCTCCATTCTCCATTGTGTCCAACTCC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       323102 303 +   4111199 ATGGGACTGGATTCCAGAGCATCGGACCTGGCCGCCAGAACTGGCCATCTCCATCCAAGAAACTGGGACCTTGGCTGCCGGA-----GTCACGTGTGGCTGAGGGCTGGCGGAGCCTGTCCCCCAGGGAGGGCTGAGTCTTGGA-GTAGTCGTTTTTGAGGAAAGGGCTGTGGGGCTCGTCCCACCTGCCCCCTTCTTTCCAGCACTTAGGTGGCACTTCCCTCTATTTTCACTCTTGGCGGCTG-TCCACACGTTGCATCCCTCATCCTTTCTTCT---CACCGT------------CCTCCATTCTCCATTCTGTCCAACTCC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5627771 305 -   6062622 ATGGGGCTGGATTCCAGAGCATCGGACCTGGCCGCCAGAACCGGCCGTTTCCATCCCAAGCAATCGGACTCTGGGTGCCGGAGCCACGCCACGTGTGGCCGAGGGCTGGCGGAGCCTGCCTCC---AGAGCGCTGAGTCCCGGAGGTGGTCGTTTCTGGGGA-GGGGCTGTGGGGCTCGTCCCACCTGCCCCCTTCTTTCCAGCACTTGCATGGCGCTTCCCTCTATTTTCACTCTTGGCGGCCG-CCCACACGTTGCATTCCTCCTCCTTTCTTCT---CGCTGT------------CCTCCATCCTCCATTCCGTCCAATTCC
i saiBol1.JH378235          C 0 C 0
s cebCap1.NW_016107979v1       898646 300 +   1024465 ATGGTGCTGGATTCCAGAGCATCGGACCTGGCCGCCAGAACCCGCCGTCTCCATCCCAGGCACTCGGACCCTGGGTACTGGA-----ACCACATGTGGCTGAGGGCTGTAGGATCCTGCCCCCCAGGGAGCGCTGAGT-CCGGAGG-GGTCGTTTCTGCAGAGGGGGCCGTGGGGCTCGTCCCACCTG-CCCCTTCTGTCCAGCACTTG-ATGGCGTTTCCCCCTATTTTCACTCTTGGTGGCTG-CCCACACGTTGCTCtcctcctcctttcttct---tgcttt------------cttccatcttccattccgtccaactcc
i cebCap1.NW_016107979v1    C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=108054.000000
s hg38.chr15_KI270850v1_alt    262387 48 +    430880 TAGCCCAGTCCC--------GGGGGCGCCTACTTCAGGTCTGAGAGTCTGAACTCC
s panTro5.chrY               25712413 42 -  26350515 TATCCCAGCCCC--------TGGCGAGCCTACCTCAGGTCTGAGAGTCTG------
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       360951 48 +    378907 TAGCCCAGTCCC--------GGGGGCGCCTACTTCAGGTCTGAGAGTCTGAACTCC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106527188 33 - 171882078 --------TCTC--------TGCGAAACCTAGCTCAGGTCTGAGAGTCT-------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6261055 40 -   6271500 --------TCCC--------TGGGAAACCTAGCTCAGGTCTGAGAGTCTGAACCCC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5153870 40 +   5160157 --------TCCC--------TGGGAAACCTAGCTCAGGTCTGAGAGTCTGAACCCC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7722717 48 +  58131712 --------tctccCAGCCCATGGGGTGCCTACCTCAGGTCAGAGAGTCTGAACCCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1111776 33 +   1458659 --------TCTC--------TGCGAAACCTAGCTCAGGTCTGAGAGT-------CT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       323405 40 +   4111199 --------TCCC--------TGGGAAACCTACCTCAGGTCTGAGAGTCTGAAACCC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5628076 46 -   6062622 TCTCCCAGCCCC--------TGGGAAACCTACCTGAGGTC--TGAGTCTAAACCCC
i saiBol1.JH378235          C 0 C 0
s cebCap1.NW_016107979v1       898946 48 +   1024465 cctctGAGCCCC--------GGGGGAGCCTACCTCAGGTCAGAGAGTCTGAACCCC
i cebCap1.NW_016107979v1    C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873530            8739860  0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e rheMac8.chr7               62606786 33 + 169600520 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=797821.000000
s hg38.chr15_KI270850v1_alt    262435 156 +    430880 GAGATGCTCTGGGTGTGTGGATTTCCTTCAGCTACCCTGATGTCCCCACTTCCAAGTCCTGACTCCTTTGAGCCATCCCAGGGGGTGTCCGGCCACTGGACCACAGGAGCAGAGGCGAGTCTGTGACTGTGTGACCAGCAAGGTG-----TGTGATGTGTG
s panTro5.chrY               25712455 145 -  26350515 -----------GGTGTGTGGATTTCCTTCAGCTACCCGGATGTCCCCACTTCCAAGTCCTGACTCCTTTGAGCCATCCCAGGGGGTGTCCTGCCACTAGACCACAGGAGTAGAGGCCAGGCTGTGACTGTGTGGCCAGCAAGGTG-----TGTGATGTGTG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       360999 156 +    378907 GAGATGCTCTGGGTGTGTGGATTTCCTTCAGCTACCCTGATGTCCCCACTTCCAAGTCCTGACTCCTTTGAGCCATCCCAGGGGGTGTCCGGCCACTGGACCACAGGAGCAGAGGCGAGTCTGTGACTGTGTGACCAGCAAGGTG-----TGTGATGTGTG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62606819 161 + 169600520 GAGATGCTCTGGGTGTGTGGATTTCTTTTTGCTACCCTGATGTCCCCACATCCAAGTCCTGACTCCTTTGAGCCATCCCTGGGGGTATCGGGCCACTTGACCATGGGAGCAGAGGCCAGGCTGTGACTCTGTGACCAACAAGATGTGTGATGTGATGTGTG
i rheMac8.chr7              I 33 C 0
s macFas5.chr7              106527221 156 - 171882078 GAGATGCTCTGGGTGTGTGGATTTCTTTTTGCTACCCTGATGTCCCCACATCCAAGTCCTGACTCCTTTGAGCCATCCCTGGGGGTATCGGGCCACTTGACCATGGGAGCAGAGGCCAGGCTGTGACTCTGTGACCAACAAGATG-----TGTGATGTGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6261095 161 -   6271500 GAGATGCTCTGGGTGTGTAGATTTCCTTCTGCTACCCTGATGTCCCCACATCCAAGTCCTGACTCCTTTGAGCCATCCCTGGGGGTATCGGGCCACTTGACCATGGGAGCAGAGGCCAGGCTGTGACTGTGTGACCAACAAGATGTGTGATGTGATGTGTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5153910 159 +   5160157 GAGATGCTCTGGGTGTGTAGATTTCCTTCTGCTACCCTGATGTCCCCACATCCAAGTCCTGACTCCTTTGAGCCATCCCTGGGGGTATCGGGCCACTTGACCACGGGAGCAGAGGCCAGGCTGTGAC--TGCAACCAACAAGATGTGTGATGTGATGTGTG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7722765 156 +  58131712 GAGATACGCTGGGTGTGTGGATTTCCTTCAGCTACCCTGATGTCCCCACTTCCAAGTCCTGACTCCTTTGAGCCATCCCAGGGGGTGTCCAGCCACTGGACCTCAGGAGCAGAGACGAGGCTGTGACTGTGTGACCATCAAGGTT-----TGTGATGTGTG
i chlSab2.chr26             C 0 I 28
s manLeu1.NW_012105520v1      1111809 154 +   1458659 GAGATGCTCTGGGTGTGTGGATTTCCTTTTGCTACCCTGATGTCCCCACATCCAAGTCCTGACTCCTTTGAGCCATCCCTGGGGGTATCGGGCCACTTGACCATGGGAGCAGAGGCCAGGCTGTGAC--TCCAACCAACAAGATG-----TGTGATGTGTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       323445 156 +   4111199 GAGATGCTCTGGGTGTGTTGATTTCCTTCTGCTACCCTGATGTCCCCACATCCAACTCCTGACTCCTTTAAGCCATCCCTGGGGGTATCGGGCCACTTGACCACGGGAGCAGAGGCCAGGCTGTGACTGTGTGACCAACAAGCTG-----TGTGATGTGTG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5628122 156 -   6062622 GATCTGCTCTGGGTGTGTGGATTTCCTTCAGCTACCCTGATGTCCCCACTTCCCAGTCCTGACTCCTTTGAGCCATCCCAGGGGGTGTCCTGCCACTGGCCCACAGGAGCAGAGGCCAGGCTGTGACTGTGTGACTAGCAAGGTG-----TGTGATGTGTG
i saiBol1.JH378235          C 0 C 0
s cebCap1.NW_016107979v1       898994 156 +   1024465 GATCTGCTCTGGGCGTGTGGATTTCCCTCAGCTACCCTGATGGCCCCACTTCCAAGTCCTGACCCCTTTGAGCCATCCCAGGGGGTGTCCGGCCACGGGCCCACAGGAGCACAGGCCGGGCTGTGACTGTGTGACCATCAAGgtg-----tgtgatgtgtg
i cebCap1.NW_016107979v1    C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=69743.000000
s hg38.chr15_KI270850v1_alt    262591 23 +    430880 CGTGAGCGAGCACACGAGTGTAA-------
s panTro5.chrY               25712600 23 -  26350515 CAGGTGCAAGCACACGACTGTGA-------
i panTro5.chrY              C 0 I 7
s gorGor5.CYUI01015946v1       361155 22 +    378907 CGTGAGCGAGCACACGAGTGTA--------
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62606980 23 + 169600520 TACAGGTGAGCACACGAGTGTGA-------
i rheMac8.chr7              C 0 I 7
s macFas5.chr7              106527377 23 - 171882078 TACAGGTGAGCACACGAGTGTGA-------
i macFas5.chr7              C 0 I 7
s macNem1.NW_012011056v1      6261256 23 -   6271500 TACGGGTGAGCACACGAGTGTGA-------
i macNem1.NW_012011056v1    C 0 I 7
s cerAty1.NW_012001384v1      5154069 23 +   5160157 TATGGGTGAGCACACGAGTGTGA-------
i cerAty1.NW_012001384v1    C 0 I 7
s manLeu1.NW_012105520v1      1111963 23 +   1458659 TACAGGTGAGCACACGAGTGTGA-------
i manLeu1.NW_012105520v1    C 0 I 7
s colAng1.NW_012116021v1       323601 23 +   4111199 TATGGGTGAGCACACGAGTGTGA-------
i colAng1.NW_012116021v1    C 0 I 7
s saiBol1.JH378235            5628278 30 -   6062622 TGTGGGCGTGCACACGAGTGTGAGAGTGTA
i saiBol1.JH378235          C 0 C 0
s cebCap1.NW_016107979v1       899150 30 +   1024465 tgtgggtgtgCACAGGAGCATGAGAGTGTA
i cebCap1.NW_016107979v1    C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873530            8739860  0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7722921 28 +  58131712 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=393652.000000
s hg38.chr15_KI270850v1_alt    262614  91 +    430880 AGAATGGCACCCAGACCTGAGCTAGGACAGAGG------------GAGCCTGGGGGCCACAGGCAAGCTCATTTCTTCTCCACACCC------CTCC---C--CG----------------CCCGACCCT
s panTro5.chrY               25712630 115 -  26350515 AGAATGGCACCCAGGCCTCAGCTAGGACAGAAGCAGCTGGGGAAGGAGCCTGGGGGCCACAGGCAATCTGATTTTTTCTCCACACCCAGACCCCTCC---C--CCTCTAT----------CCCTAACCCT
i panTro5.chrY              I 7 C 0
s gorGor5.CYUI01015946v1       361177 103 +    378907 AGAATGGCACCCAGACCTGAGCTAGGACAGAAG------------GAGCCTGGGGGCCACAGGCAAGCTCATTTCTTCTCCACAcccctccccgccc---c--ccccccc----------ccccGACCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62607010 106 + 169600520 AGAGTGGCACCCAGGCCTGAGCTAGGACAGAAGCAACTGGGGAAGGAGCCCAGGGGCCACAGGCAGTCTGATTTTTTCTCCGCATCT---------C---C--CCCTACC----------CCCTGACCCT
i rheMac8.chr7              I 7 C 0
s macFas5.chr7              106527407 102 - 171882078 AGAGTGGCACCCAGGCCTAAGCTAGGACAGAAGCAACTGGGGAAGGAGCCCGGGGGCCACAGGCAGTCTGATTTTTTCTCCACAT------------------CCCCACC----------CCCTGACCCT
i macFas5.chr7              I 7 C 0
s macNem1.NW_012011056v1      6261286 106 -   6271500 AGAGTGGCACCCAGGCCTGAGCTAGGACAGAAGCAACTGGGGAAGGAGCCCAGGGGCCACAGGCAGTCTGATTTTTTCTCCGCATCT---------C---C--CCCCACC----------CCCTGACCCT
i macNem1.NW_012011056v1    I 7 C 0
s cerAty1.NW_012001384v1      5154099 106 +   5160157 AGAGTGGCACCCAGGCCTGAGCTAGGACAGAAGCAACTGGGGAAGGAGCCCAGGGGCCACAGGCAGTCTGATTTTTTCTCCGCATCT---------C---C--CCCCACC----------CCCTGACCCT
i cerAty1.NW_012001384v1    I 7 C 0
s chlSab2.chr26               7722949 107 +  58131712 AGAATGGCA-CCAAGCCTGGGCTAGGACAGAAGCAGCTGGGGAAGGAGCCTGGGGGCCATGAGCAATCTGATTTTTTATCCACCTCC---------C---CCGCCCCGCC----------ACCTTACCCA
i chlSab2.chr26             I 28 C 0
s manLeu1.NW_012105520v1      1111993 102 +   1458659 AGAGTGGCACCCAGGCCTGAGCTAGGACAGAAGCAACTGGGGAAGGAGCCCGGGGTCCATAGGCAGTCTGATTTTTTCTCCACAT------------------CCCCACC----------CCCTGACCCT
i manLeu1.NW_012105520v1    I 7 C 0
s colAng1.NW_012116021v1       323631 106 +   4111199 AGAGGGGCACCCAGGCCTGAGCTAGGACAGAAGCAACTGGGGAAGGAGCCCGGGGGCCACAGGCAGTCTGATTTTTTCTCCACATCT---------C---C--CCCCACC----------CCCTGACCCT
i colAng1.NW_012116021v1    I 7 C 0
s saiBol1.JH378235            5628308 115 -   6062622 AGAATGGCACCCAGGCCTCGGCTAGGACAGGAGCAGGTGAGGAAGGAGCCTG-GGGCCATGGGCAATCTGATGGCTCCCCCTCCCCC---------A---G--GCCCCCCGGAACTTCTGGCACTACCCA
i saiBol1.JH378235          C 0 C 0
s cebCap1.NW_016107979v1       899180 109 +   1024465 AGAATGGCTTCCGGGCCTGGGCTAGGACAGAAGCAGCTGGGGAAGGAGCCTGAGGGCCATAGGCAAGCTGATTTTTCCTccaccccc---------accca--gcccccc----------accccaccct
i cebCap1.NW_016107979v1    C 0 I 24
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=77415.000000
s hg38.chr15_KI270850v1_alt    262705 20 +    430880 GTCTAAACTAATGGGGTAGT
s panTro5.chrY               25712745 20 -  26350515 GTCTAAACTAATGGGGTAGT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       361280 20 +    378907 GTCTAAACTAATGGGGTAGT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62607116 20 + 169600520 GTCTAAACTAATGGGGTAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106527509 20 - 171882078 GTCTAAACTAATGTGGTAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6261392 20 -   6271500 GTCCAAACTAATGGGGTAGT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5154205 20 +   5160157 GTCCAAACTAATGGGGTAGT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7723056 20 +  58131712 GTCTAAACCAATGTGGTAAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1112095 20 +   1458659 GTCTAAACTAATGTGGTAGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       323737 20 +   4111199 GTCTAAACTAATGGGGTAGT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5628423 19 -   6062622 CTCTAAACCAATGTGCAGG-
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       899289 24 +   1024465 I
e otoGar3.GL873530            8739860  0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=1817177.000000
s hg38.chr15_KI270850v1_alt    262725 356 +    430880 GGTAGCCGCGAGGGCAGGGATGGGAGTGGCTGAAGCCTACTTCACTCCCAAAGATTTCTAAGGAAAATGGTTCTACTGCATCCTTTGGCTGGGCCTTGTTGACCCGTGACCCTCTTTCAAGAACATTCACTCTGATTTCCAGTGTGCC--GTCTCCACTGGCCACGTTCTCTAAGGA----------AGAACAATAGCATCTGTTTTTGTTTCCAAATGGCTGGAGAGTGGGGCTGTGGGACCAGCGCCCATATATAAAAATGAAGCAGGGATTGGGGCTTGCCCTGTGATGTGCTGTTGACCAAGTTAGAGGGGTAtaggcaagcagcaaagtattgggcaagatcactggactgggagtccagaga
s panTro5.chrY               25712765 358 -  26350515 GGTAGCTGCAAGGGCAGGGATGAGAGTGGCTGAAGACTACTTCACTCTCAAAGATTTATAAGGAAAATGGTTCTACCGTATCCTTTGGCTTGGCCTGGTTGACCCATGACCCTCTTTCAAGAACATTCACTCTGATTTCCAGTGTGCCCTGTTTCCACTGGCCATGTTCTCTAAGGA----------AGAACAATAGCATCTGTTTTTGTTTCCAAATGGCTGGACAGTGGGGCTGTAGGTCCAGCGCCCATACACAAAAATGAAGCAGGGACTGGGGCTTGCCCTATGACGTGCTGATGACCAAGTTAGATGGGTAGaggcaagctgcatagtattgggcaagatcactggactgggagtccagaga
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       361300 358 +    378907 GGTAGCCGCAAGGGCAGGGATGGGAGTGGCTGAAGCCTACTTCACTCCCAAAGATTTCTAAGGAAAATGGTTCTACTGCATCCTTTGGCTGGGCCTTGTTAACCCGTGACCCTCTTTCAAGAACATTCACTCTGATTTCCAGTGTGCCCTGTCTCCACTGGCCACATTCTCTAAGGA----------AGAACAATAGCATCTGTTTTTGTTTCCAAATGGCTGGAGAGTGGGGCTGTGCGACCAGCGCCCATATATAAAAATGAAGCAGGGATTGGGGCTTGCCCTGTGATGTGCTGTTGACCAAGTTAGAGGGGTAtaggcaagcagcaaagtattgggcaagatcactggactgggagtccagaga
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62607136 358 + 169600520 GGCAGCTGCAGGGGCAGGGATGGGAGTGACTGAAGCCTACTTCACTCCCAAAGATTTCTAAGGAAGAGCATTCTACTGCAACCTTTGGCTTGGCCTTGTTGACCCATGACCCTCTTTCAAGGACATTCACTCTGATTTCCAGTGTGCCCTGTTTCCACTGGCCATGTTCTCTAAGGT----------AGAACAATAGCATCTGTTTTTGTGTCCAAATGGCTGGAGAGTGGGGCTGTGGGTCCAGCGCCCATATACAAAAGCAAAGTAGGGATTGGGACTTGCCCTATGACGTGCTGTTGACCAAGTTACATGGGTAAAGGCAAGCAgcagagtactgggcaagagcgctggactgggagtccagaga
i rheMac8.chr7              C 0 I 1588
s macFas5.chr7              106527529 358 - 171882078 GGCAGCTGCAGGGGCAGGGATGAGAGTGACTGAAGCCTACTTCACTCCCAAAGATTTCTAAGGAAGAGCATTCTACTGCAACCTTTGGCTTGGCCTTGTTGACCTATGACCCTCTTTCAACGACATTCACTCTGATTTCCAGTGTGCCCTGTTTCCACTGGCCACGTTCTCTAAGGA----------AGAACAATAGCATCTGTTTTTGTGTCCAAATGGCTGGAGAGTGGGGCTGTGGGTCCAGCGCCCATATACAAAAGCAAAGTAGGGATTGGGGCTTGCCCTATGACGTGCTGATGACCAAGTTACATGGGTAAAGGCAAGCAgcagagtattgggcaagagcgctggactgggagtccagaga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6261412 358 -   6271500 GGCAGCTGCAGGGGCAGGGATGGGAGTGACTGAGTCCTACTTCACTCCCAAAGATTTCTAAGGAAGAGCGTTCTACTGCAACCTTTGGCTTGGCCTTGTTGACCCATGACCCTCTTTCAAGGACATTCACTCTGATTTCCAGTGTGCCCTGTTTCCACTGGCCATGTTCTCTAAGGT----------AGAACAATAGCATCTGTTTTTGTGTCCAAATGGCTGGAGAGTGGGGCTGTGGGTCCAGCGCCCATATACAAAAGCAAAGTAGGGATTGGGGCTTGCCCTATGACGTGCTGTTGACCAAGTTACATGGATAAAGGCAAGCAgcagagtactgggcaagaacactggactgggagtccagaga
i macNem1.NW_012011056v1    C 0 I 1579
s cerAty1.NW_012001384v1      5154225 358 +   5160157 GGCAGCTGCAGGGGCAGGGATGGGAGTAACTGAGTCCTACTTCACTCCCAAAGATTTCTAAGGAAGAGCGTTCTACTGCAACCTTTGGCTTGGCCTTGTTGACCCATGACCCTCTTTCAAGGACATTCACTCTGATTTCCAGTGTGCCCTGTTTCCACTGGCCATGTTCTCTAAGGT----------AGAACAATAGCATCTGTTTTTGTGTCCAAATGGCTGGAGAGTGGGGCTGTGGGTCCAGCGCCCATATACAAAAGCGAAGTAGGGATTGGGGCTTGCCCTATGACGTGCTGTTGACCAAGTTACATGAATAAAGGCAAGCAgcagagtactgggcaagaacactggactgggagtccagaga
i cerAty1.NW_012001384v1    C 0 I 1591
s chlSab2.chr26               7723076 346 +  58131712 GGTGGCTGCCGGGGAAGGGATAGGAGTGTCTGAAGCCTACTTCACTCCCAAAGATTTCTAAGGAAAAGCATT---CTGCATCCTCTGGCTTGGACTTGTTGACCCATGGCCCTCTTTCAAGGACATTCACTCTGATTCCCAGTGTGCCCTGTTTACACTGGCCACGTTCTCTAAGGA----------A-AACAATAGCATATGTTTTTGTTTCCAAATGGCTGGAGAGTGGGGCTGTGGGTCCAGCGCCCATAAACCAAAATGAGGCAGGGATTGGGGCTTGCCCTAGGATGTGGTAATGACCAACCGAGATGGGTAGAGGCAAGCAGCGTGGTATTGGCCAA--------GACTGGGAGTCCAGAGA
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1112115 358 +   1458659 GGCAGCTGCAGGGGCAGGGATGAGAGTGACTGAATCCTACTTTACTCCCAAAGATTTCTAAGGAAGAGCATTCTACTGCAACCTTTGGCTTGGCCTTGTTGACCTATGACCCTCTTTCAAGGACATTCACTCTGATTTCCAGTGTGCCCTGTTTCCACTGGCCACGTTCTCTAAGGA----------AGAACAATAGCATCTGTTTTTGTGTCCAAATGGCTGGAGAGTGGGGCTGTGGGTCCAATGCCCATATACAAAAATGAAGTAGGGATTGAGGCTTGCCCTATGACGTGCTGATGACCAAGTTACATGGGTAAAGGCAAGCAgcagagtattgggcaagagcactggactgggagtccagaga
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       323757 358 +   4111199 GGCAGCTGCAGGGGCAGGGATGGGAGTGACTGAATCCTACTTCACTCCCAAAGATTTCTAAGGAAGAGTGTTCTATTGCAACCTTTGGCTTGGCCTTGTTGACCCATGACCCTCTTTCAAGGACATTCACTCTGATTTCCAGTGTGCCCTGTTTCCACTGGCCATGTTCTTTAAGGA----------AGAACAATAGCATCTGTTTTTGTGTCCAAATGGCTGGAGAGGGGGGCTGTGGGTCCAGCACCCGTATACAAAAACGAAGTAGGGATTGGGGCTTGCCCTATGACGTGCTGATGACCAAGTTACATGGGTAAaggcaagcagcagagtattgggcaagagcactggactgggagtccagaga
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5628442 366 -   6062622 GGTGGCAGCAGGGGCAGGGATGGGAGTGACTGAAGCCTGCCTCATTCCTAGAGATTTCTAGGGAAAAGCTTTCTACTACATCCTTTGGCTTGACCTTCTTGAACCATGACCCTCTTTCAGGGAAGTTCCCTCAGATTCCCAGTCTGCTCTGTTTCCACTGGCCAGGTTCTCTAAGGAATAACACACCAGAACCATAGCGTCTGTTTTTGTTTCCACATGGCTGGAGGGTAGGGCTGTAGGTCTAG--CACATAAACAAAAATGAGGTAGGGATTGGGGCTTGCCCTATGATGCTCTGATGACcaaagcagatgggtagaggcaagcagcatgatattgggtaagagcactggactggaagtccagaga
i saiBol1.JH378235          C 0 C 0
s cebCap1.NW_016107979v1       899313 345 +   1024465 GGTGGCTGCAGGGGCAGGGATGGGACTGGCTGAAGCCTGCTTCACTCCCAAAGATTTCTCGGGAAAAGCGTTCTACTGCATCCTTTGGCTTGGCCTTGCTGACCCATGGCCCTCCTTCAAGGACGTTCACTCCGACTCCCAGTGTGTCCTGTTTCCACTGGCCACATTCTCTAAGGA----------AGAACAATGGCATCTGTTTTTGTCTCCAGATGACTGGAGGGTAGGGCTGTGGGTCCAGATCCCATAAACCAAAATGAGGCAGGGATTGGGGCTTGCCCTATGACCCGCTGATGACC-------------AGTGGCaggcagcacggtattgggcaagagcactggactgggagtccagaga
i cebCap1.NW_016107979v1    I 24 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=274305.000000
s hg38.chr15_KI270850v1_alt    263081 49 +    430880 tgctgcttcaccctggggctttaggcaagtccctttccctcccagagcc
s panTro5.chrY               25713123 49 -  26350515 tgctgcttcaccctgtggctttaagcaagtccctttccctcccagagcc
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       361658 49 +    378907 tgctgcttcaccctggggctttaggcaagtccctttccctcccagaccc
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62609082 49 + 169600520 tgctgcttcatcctggggctttaggcaagtcccttttcctcccagagct
i rheMac8.chr7              I 1588 C 0
s macFas5.chr7              106527887 49 - 171882078 tgcttcttcaccctggggctttaggcaagtccctttccctcccagagcc
i macFas5.chr7              C 0 I 1587
s macNem1.NW_012011056v1      6263349 49 -   6271500 tgctgcttcatcctggggctttaggcaagtcccttttcctcccagagct
i macNem1.NW_012011056v1    I 1579 C 0
s cerAty1.NW_012001384v1      5156174 49 +   5160157 tgctgcttcatcctggggctttaggcaagtccctttccctccgagagcc
i cerAty1.NW_012001384v1    I 1591 C 0
s chlSab2.chr26               7723422 49 +  58131712 TGCTGCTTCACCCTTGgacttcaggcaagtccctttcccttccagagcc
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1112473 49 +   1458659 tgcttcttcaccctggggctttaggcaagtccctttccctcccagagcc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       324115 49 +   4111199 tgctgcttcaccctggggctttaggcaagtccctttccctcccagagcc
i colAng1.NW_012116021v1    C 0 I 1552
s saiBol1.JH378235            5628808 49 -   6062622 tgctgcttcaccgtgggcctttaggcaagtccctttccctcccagagcc
i saiBol1.JH378235          C 0 C 0
s cebCap1.NW_016107979v1       899658 49 +   1024465 tgctgcctcaccctgggcctctaggcaagtccctttccctcccagagcc
i cebCap1.NW_016107979v1    C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873530            8739860  0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=4664.000000
s hg38.chr15_KI270850v1_alt    263130 1 +    430880 t
s panTro5.chrY               25713172 1 -  26350515 t
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       361707 1 +    378907 t
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62609131 1 + 169600520 t
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106529523 1 - 171882078 t
i macFas5.chr7              I 1587 C 0
s macNem1.NW_012011056v1      6263398 1 -   6271500 t
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5156223 1 +   5160157 c
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7723471 1 +  58131712 t
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1112522 1 +   1458659 t
i manLeu1.NW_012105520v1    C 0 I 1690
s colAng1.NW_012116021v1       325716 1 +   4111199 t
i colAng1.NW_012116021v1    I 1552 C 0
s saiBol1.JH378235            5628857 1 -   6062622 t
i saiBol1.JH378235          C 0 C 0
s cebCap1.NW_016107979v1       899707 1 +   1024465 t
i cebCap1.NW_016107979v1    C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873530            8739860 0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=2166018.000000
s hg38.chr15_KI270850v1_alt    263131 418 +    430880 cagcatcccttttagcaaattatgacattctgcctttctcctaggatggctgtggggatcaagggagacagtggc-catagggatgctatgttaaccgcagaTGCGGCTGTAGGAGCACTTTGCTAACTGCCAACG-TGAGTTCAGACTCTTCAGGCTATTTGGCACCCAGGTCTATGGTGAGGTGTGACATATGGGATGTAAAGTTTGATGCCTGCTCTGACTCCAGTCTTGCTAACACACACACGAAACCTTTGGCAAATCATGACCCTGCCTTGGGGAAAAGGGCAGTCTGGGAGAGCTTCTTCAAGGCAGCCTGGCTTCAATGCAGTCCGGGGCATGACTGAGATAGGCATACGTTGTGAGGAA-CTGGAGGGTAACTGGGTAAAGAGCTGCAGTGTGGGCAGAGGTGTAGTGTGGG
s panTro5.chrY               25713173 416 -  26350515 cagcatcccttctatgaaatgatgacgttctgcctttctcctaggatggctgtggggatcaagggagacagtggc-catagggatactatgttaactgcagatgtggctgtaGGAGCACTTTGCTAACTGCCAACA-TGAGTTCAGACTCTTCAGGCTATTTGGCACCCAGGTCTATGGTGAGGTGTGACATATGGGATGTAAAGTTTGATGCCTGCTCTGACTCCAGTCTTGCTAACACACAC--GAAACCTTTGGCAAATCATGACCCTGCCTTGGGGAAAAGGGCAGTCTGGGAGAGTTTCTTCAAGGCAGCCTGGCTTCAATGCAGTCTGGGGCATGACTGAGATAGGCATATGTTGTGAGGAA-CTGGAGGGTAACTGGGTAAAGAGCTGCAGTGTGGGCAGAGGTGTAGTGTGGG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       361708 418 +    378907 cagcatcccttttagcaaattatgacattctgcctttctcctaggatggctgtggggatcaagggagacagtggc-catagggatgctatgttaactgcagaTGCGGCTGTAGGAGCACTTTCCTAACTGCCAACG-TGAGTTCAGACTCTTCAGGCTATTTGGCACCCAGGTATATGGTGAGATGTGACATATGGGATGTAAAGTTTGATGCCTGCTCTGACTCCAGGCTTGCTAACACACACACGAAACCTTTCGCAAATCATGACCCTGCCTTGGGGAAAAGGGCAGTCTGGGAGAGCTTCTTCAAGGCAGCCTGGCTTCAATGCAGTCCGGGGCATGACTGAGATAGGCATATGTGGCGAGCAA-CTGGAGGGTAACTGGGTAAAGAGCTGCAGTGTGGGCAGAGGTGTAGTGTGGG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62609132 414 + 169600520 cagtatcccttctatcaaatgatgatgttctgcctttctcctaggatggctgtggagatccagggagacagtggc-catagagatgctatgttaactgcagaTGCAGCCATAGGGGCCCTTTGCTAACGGCCAACG-TGAGTTCAGACTCTTCAAGCTATTTGGCACCCAGGTCTGTGGTGAGGTGTGACATGTGGGATGTAAGGTTTGATGCCTGCTCCGACTCCAGTCTTGCTAACACACGC--TAAACATTTGACAAATCCTGACCCTACCTTGGGGAAAAGGGCAGTCTGGGAGAGCTTCTTCAAGGCAGGCTGGCTTCAATGCAGTCCGGGGCATGACTGAGATAGGCTTATGTGGTGAGGAA-TTGGAGGATAACTGGGTAAAAAGCTGC--CATGGGCAGAGGTGTAGTGTGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106529524 414 - 171882078 cagtatcccttctatcaaatgatgatgttctgcctttctcctaggatggctgtggagatcccgggaggcagtggc-catagggatgctatgttaactgcagaTGCAGCCATAGGAGCCCTTTGCTAACTGCCAACG-TGAGTTCAGACTCTTCAAGCTATTTGGCACCCaggtgtgtggtgaggtgtgacatgtgggatgtaaggtttgaTGCCTGCTCCGACTCCAGTCTTGCTAACACACGC--TAAACATTTGACAAATCCTGACCTTACCTTGGGGAAAAGGGCAGTCTGGGAGAGCTTCTTCAAGGCAGGCTGGCTTCAATGCAGTCCGGGGCATGACTGAGATAGGCTTATGTGGTGAGGAA-TTGGAGGATAACTGGGTAAAAAGCTGC--CATGGGCAGAGGTGTAGTGTGGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6263399 414 -   6271500 cagtatcccttctatcaaatgatgatgttctgcctttctcctaggatggctgtggagatcccgggaggcagtggc-catagggatgctatgttaactgcagaTGCAGCCATAGGAGCCCTTTGCTAACTGCCAACG-TGAGTTCAGACTCTTCAAGCTATTTGGCACCCAGGTCTATGGTGAGGTGTGACATGTGGGATGTAAGGTTTGATGCCTGCTCCGACTCCGGTCTTGCTAACACACGC--TAAACATTTGACAAATCCTGACCCTACCTTGGGGAAAAGGGCAGTCTGGGAGAGCTTCTTCAAGGCAGATTGGCTTCAATGCAGTCCGGGGCATGACTGAGATAGGCTTACGTGGTGAGGAA-TTGGAGGATAACTGGGTAAAAAGCTGC--CATGGGCGGAGGTGTAGTGTGGG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5156224 414 +   5160157 cagtatctcctctatcaaatgatgatgttctgcctttctcctaggatggctgtggagatcctgggaggcagtggc-catagggatgctatgttaactgcagaTGCAGCCATAGGAGCCCTTTGCTAACTGCCAACG-TGAGTTCAGACTCTTCAAGCTATTTGGCACCCAGGTGTGTGGTAAGGTGTGACATGTGGGATGTAAGGTTTGATGCCTGCTCCGACTCCGGTCTTGCTAACACACAC--TAAACATTTGACAAATCCTGACCCTACCTTGGGGAAAAGGGCAGTCTGGGAGAGCTTCTTCAAGGCAGATTGGCTTCAATGCAGTCCGGGGCATGACTGAGATAGGCTTACGTGGTGAGGAA-TTGGGGGATAACTGGGTAAAGAGCTGC--CATGGGCAGAGGTGTAGTGTGGG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr26               7723472 416 +  58131712 cagcatcctttctatcaaatgatttctttctgcctttctcccagggtggctgtggggattaagggagacagtggt-catagggatgctgtgttaactgcagaTGCGGCTGTAGGAGCACTTTGCTAACTACCAACG-TGAGTTGAGACTCTTCAGGGTATTTGGCACCCAGGTCTGTGGTGAGGTGTGACATATGGGATGTAAGGTTTGATGCCTGCTCCAACTCTAGTCTTACTAATGCAAGC--AAAACATTTGGCAAGTCATGACCCTGCCTTGGGGAAAAGGGCAGTCTGGGAGAGCTTCTTCAAGGCAGCCTGGCTTCAATGGAGTCCAGGGTATGACTGAGATAGGCTTATGTGACGAGGAA-TTGGAGGGTATCTGGGTAAAGAGCTGCAGTGTGGACAGAGGTTTAGTGTGGG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1114213 414 +   1458659 cagtatcccttctatcaaatgatgatgttctgcctttctcctaggatggctgtggagatccagggaggcagtggc-catagaaatgctatattaactgcagaTGCAGCCGTAGGAGCACTTTGCTAACTGCCAACG-TGAGTTCAGACTCTTCAGGCTATTTGGCACCCAGGTCTATGGTGAGGTGTGACATGTGGGATGTAAGGTTTGATGCCTGCTCCGACTCCAGTCTTGCTAACACACAC--TAAACATTTGACAAATCATGACCCTGCCTTGGGGAAAAGGGCAGTCTGGGAGAGCTTCTTCAAGGCAGGCTGGCTTCAGTGAAGTCCGGGGCATGACTGAGATAGGCTTACGTGGTGAGGAA-TTGGAGGATAACTGGGTAAAAAGCTGC--CATGGGCAGAGGTGTAGTGTGGG
i manLeu1.NW_012105520v1    I 1690 C 0
s colAng1.NW_012116021v1       325717 397 +   4111199 cagtatcccttctatcaaatgatgatgttctgcctttctcctaggatggctgtggagatccagggagacagtggc-catagggatgctatgttaactgcagaTGCAGCCGTAGGAGCACTTTGCTAACTGCCAACG-TGAGTTCAGACTCTTCAGGCTATTTGGCACCCAGGTCTGTGGTGAGGTGTGACATGTGGGATGTAAGGTTTGATGCCTGCTCCGACTCCGGTCTTGCTAACACCCGC--TAAACATTTGGCAAATCATGACCCTACCTTGGGGAAAAGGGCAGTCTGGGAGAGCTCCTTCAAGG-----------------AGCTCGGGGCATGACTGAGATAGGCTTACGTGGTGAGGAA-TTGGAGGGTAACTGGGTAAAAAGCTGC--CATGGGCAGAGGTGTAGTGTGGG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5628858 419 -   6062622 cagcagcccttctatcaaatgatgaccttctgcctttctacctaggtggttgtggggatcgagggagacagtggcttatagggatgctatgttaactgtagaTGCGACCGTAGGAGCACTTTGCTAACTGCCAACGTTGAGTTCAGACTCTTCAGGGTATTTGGCACTCAGGTCTGTGGTGTGGTGTGCCATATGGGATGTAAGGTTTGATGCCTGCTCTGACTCCAGTCTTGCTAACACATGC--AAAACATTGGGCAAATCATGGACCTGCCTTGGGGAAAAGAGTAGTCTGGGAGAGCTTCTTCAAGGTAACCTGACTTCAGTGCAGTCCGAAGCATGACTGAGATAGGCTTATGTGGCAAGGAATCGGGAGGGTATCTGGGTAAAGAGCTGCAGTGTGGGCAGAGATGTAGTGTGGA
i saiBol1.JH378235          C 0 C 0
s cebCap1.NW_016107979v1       899708 412 +   1024465 cagcatcccttctatcagatgatgacgttctgcctttctcccagggtggttgtggggatcaagggagacagtggc-cacaggggtgctgtgttaactgcagaTGCAGCCGTAGGGGCACCATGCTAACTGCCAATG-TGAGTTCAGACTCTTCAGGGCATTTGGCGCCCAGGTCTATGATGAGGTGTGACATATGGCAGGTAAGGTTTGATGCCTGCTCCGACTCCAGTCTCACTGACACCCAG--GAGACATGTGGCAAATCATGACCCTGCCTTGGGGAAAAGAGCAGTCTGGGAGAGCTTCCTCAAGGCAGCCTGACTTCACTGTGGTCCGGGGCATGACTG----AGGCTTACGTGGCGAGGAA-CTGGAGGGTATCTGGGTAAAGAGCTGCAGTGTGGGCAGAGGTGTAGTGTGGG
i cebCap1.NW_016107979v1    C 0 I 8194
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=-1831.000000
s hg38.chr15_KI270850v1_alt    263549 2 +    430880 TC-
s panTro5.chrY               25713589 2 -  26350515 TC-
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       362126 2 +    378907 TC-
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62609546 2 + 169600520 TC-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106529938 2 - 171882078 TC-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6263813 2 -   6271500 TC-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5156638 2 +   5160157 TC-
i cerAty1.NW_012001384v1    C 0 M 977
s chlSab2.chr26               7723888 2 +  58131712 AC-
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1114627 2 +   1458659 TC-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       326114 1 +   4111199 T--
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5629277 2 -   6062622 -CT
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       900120 8194 +   1024465 I
e otoGar3.GL873530            8739860 0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=1365830.000000
s hg38.chr15_KI270850v1_alt    263551 370 +    430880 ACATTGAGGATAGCCACTGGCCAAAGCAGGGAACAGAGACAGAATGAGGAAGAGCTCTGTGGGGAGGGTGGGGCACAGGGTGGAGAACCTTCAAAGTCCAAAGAGTATGACTTGTTGGGATTCAACGCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTTAGGTGGAGAAATGACAGCCGGACATTAGTGAGCAAGCCCTGTCTCCCTGAGCAGGATGGGTGGTCCTCTGAGCACGCCAGGCACGAGTGTGCAGGGAGCTGGTGCAAATGCCTCTGTGTGCGGGTGAGCATCTGTGTTGTGACTCTGCCCACGCATGTGCTTCAGTGTGCCGAGTGGCTGCACGCCCCAGATCCATGCGGCACGTGCCGGC
s panTro5.chrY               25713591 367 -  26350515 ACATTGAGGATAGCCACTGGCCAAAGCAGGGAACAGAGACAGAATGAGGAAGAGCTCTGTGGGGAAGGTGGGGCACAGGGTGGAGAACCTTCAAAGTCCAAAGAGTATGACTTGTTGGGATTCAATGCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTTAGGTGGAGAAATGACAGCTGGACATTAGTGAGCAAGCCCTGTCTCCCTGAGCAGCAT-GGTGGTCCTCTGAGCACACCAGGCATGAGTGTGCAGGGAGCTGGTGCAAATGCCTCTGTGT--GGGTAAGCATCTGTGTTGTGACTCTGCCTATGCACGTGCTTCAGTGTGCCAAGTGGCTGCATGCCCCAGATCCATGCGGCACATGCCGGC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       362128 369 +    378907 ACATTGAGGATAGCCACTGGCCAAAGCAGGGAACAGGGACAGAATGAGGAAGAGCTCTGTGGGGAGGGTGGGGCACAGGGTGGAGAACCTTCGAAGTCCAGAGAGTATGACTTGTTGGGATTCAACGCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTTAGGTGGAGAAATGACAGCTGGACATTAGTGAGCAAGCCCTGTCTCCCTGAGCAGCATGGGTGGTCCTCTGAGCACGCCAGGCACGAGTGTGCAGGGAGCTGGTGCAAATGCCTCTGTGTGCGGGTGAGCATCTGTGTTGTGACTCTGCCCACGCATGTGCTTCAGTGTGCCGAGTGGCTGCACGCCCCAGATCCATGCGGCACGTG-CGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62609548 370 + 169600520 GCATCGAGGATAGCCCCCGGCCAAAGCAGGGAACACAGACAGAATGAGGAAGAGCTCTGTGGGGAAGGTGGGGCATACGGTGGAGAACCTTCAAAGTCTGAAGAGTATGACTTGTTGGGGTTCAGTGCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTCAGGTGGAGAAATGACAGCTGGACATTGGTGAGCAATCCCTGTCTCCATGAGCAGCGTGGGTGGTCCTCTGAGCACACCAGGCACGAGTGTGCAGGGAGCTGGTGCAAATGCCTCTGTGTGCGGGCGAGCATCTGTGTTGTGACTCTGCCCACGCATGTGCTTCAGTGTGCCGAGTGGCTGCATGTCCCAGATCCTTGTGGCACATGCTGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106529940 370 - 171882078 GCATCGAGGATAGCCCCTGGCCAAAGCAGGGAACACAGACAGAATGAGGAAGAGCTCTGTGGGGAAGGTGGGGCGTAGGGTGGAGAACCTTCAAAGTCTGAAGAGTGTGACTTGTTGGGGTTCAGTGCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTTAGGTGGAGAAATGACAGCTGGACATTGGTGAGCAAGCCCTGTCTCCATGAGCAGCGTGGGTGGTCCTCTGAGCACACCAGGCACGAGTGTGCAGGGAGCTGGTGCAAATGCCTCTGTGTGCGGGCGAGCATCTGTGTTGTGACTCTGCCCACGCATGTGCTTCAGTGTGCCGAGTGGCTGCATGTCCCAGATCCTTGTGGCACAGGCCGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6263815 370 -   6271500 GCATCGAGGATAGCCCCCGGCCAAAGCAGGGAACACAGACAGAATGAGGAAGAGCTCTGTGGGGAAGGTGGGGCATACGGTGGAGAACCTTCAAAGTCTGAAGAGTATGACTTGTTGGGGTTCAATGCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTCAGGTGGAGAAATGACAGCTGGACATTAGTGGGCAAGCCCCGTCTCCATGAGCAGCATGGGTGGTCCTCTGAGCACACCAGGCACGAGTGTGCAGGGAGCTGGTGCAAATGCCTCTGTGTGTGGGCGAGCATCTGTGTTGTGACTCTGCCCACACATGTGCTTCAGTGTGCTGTGTGGCTGCATGTCCCAGATCCATGTGGCATATCCCGGC
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr26               7723890 368 +  58131712 TCACTGAGGACAGCCGCTGGCCAAAGCAGGGAACAGAGACAGAATGAGAAAGAGCTCTGTGGGGAGGGTGGGGCATAGGGTGGAGAA-CTTCAAAGTCCGAAGAGTATGACTTGTTGGGGCTCAAAGCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTTAGGTAGAGAAATGGCAGCTGAACATTAGCAAGCAAGCACTGTCTCCATGAGCAGCATGGATGGTCCTCTGAGCATGCCA-GCATGGGTGTGCAGGGAGCTGGTGCAAATGCCTCTGTGTGTGGGTGAGCTTCTGTGTTGTGACTCTGCCCATGTGTGTGCTTCAGTGTGCCAAGTGGCTGCACGCCCCAGATCTGTGCTGCACGTGCCAGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1114629 370 +   1458659 ACATCGAGGATAGCCCCTGGCCAAAGCAGGGAACAGAGACAGAATGAGGAAGAGCTCTGTGGGGAAAGTGGGGCATAGGGTGGAGAACCTTCAAAGTCCGAAGAGTATGACTTGTTGGGGTTCAATGCTGTAGGCAGTAGGGAGCCATGGAAGGCTCTTAGGTGGAGAAATGACAGCTGGACATTGTTGAGCAAGCCCTGTCTCCATGAGCAGCGTAGGTGGTCCTCTGAGCACACCAGGGACAAGTGTACAGGGAGCTGATGGAAATGCCTCTGTGTGCGGGCGAGCATCTGTGTTGTGACTCTGTCCATGCATGTGCTTCAGTGTGCCGAGTGGCTGCATGTCCCAGATCCTTATGACACAGGCCGGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       326115 361 +   4111199 ------AGGATAGCCCCTGGCCAAAGCAGGGAACAGAGACAGAATGAGGAAGAGCTGTGTGGGGAAGGTGGGGCATAGGGTGGAGAACCTTCAAAGTCTGAAGAGTGTGACTTGTTGGGGTTCAATGCTGTAGGCAGTAGGGAGCCATGGAAGGCTGTTAGGTGGAGAAATGACAGCTGCACGTTAGTGAGCAAGCCCTGTCTCCATGAGCAGCGTGGGGGGACCTCTGAGCACACCAGGCAGGAGTGTGCAGGGAGCTGGTGCAAATGCCTGTGTGC---GGCGAGCATCTGTGTTGTGACTCTGCCCACGCATGTGCTTCAGTGTGCCGACTGGCTGCACGTCCCAGATCCATGTGGCACATGCCGGC
i colAng1.NW_012116021v1    C 0 M 1445
s saiBol1.JH378235            5629279 370 -   6062622 GCATCGAGGACAGCCACTGGCCAAAGCAGAGAACAGAGACAGAATGAGGAAGAGCTCTGTGGGGAGGGTGGGGCAAGAGGTGGAGAACCTTCAAAGTCCGAAGAGTTCGCCTTGTTGGGGCTCAATGCTGTAGGCAGTAGGGAGCCACGGAAGGCTCTTAGGTGGAGAAATGACAGCTGGACATTAGCAAGCAAGCCCTGTCTCCATGAGCAGCACGGGTGGTCCTCTAAGCACACCAGGCACAAGTGTGCAAGGAGCTGGTGCAAATGCCTCTGTGTGCGGGCGAGCTTCTGTGTTGTGACTCTGCCCACGTGTGTGCTTCAGTGTGCCGGGTGGCTGCATGCCCCAGATCCATGCTGCACGCGCCGGC
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       900120 8194 +   1024465 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1      5156640 977 +   5160157 M
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=352029.000000
s hg38.chr15_KI270850v1_alt    263921 148 +    430880 TGGTGAGGGTGTTGGGCACCGGGAGGTGGCGGAGAGGGCGACGTATGCGTGTTGTTTGTGGGCA--TGTGTTAGAGTGTGCATGCGGGCCGTGGGGCCTCACAGCATGTGTGTGCACAATCTGGCGTGTGC----------GTGTGTCCGCCACCCCCAG
s panTro5.chrY               25713958 150 -  26350515 CGGTGAGGGTGCTGGGCACCGGGAGGTGGTGGGGAAGGTGGCGTATACGTGTTGTTTGTGGGCA--TGTGTTAGAGTGTGCATGCAGGCCATGGGGCCTCACAGCATGTGTGTGCACACTCCGGCATGTGC--------TTGTGTGTCCCCCACCCCCAG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       362497 145 +    378907 CGGTGAGGGTGCTGGGCACCGGGAGGTGGCGGGGAGGGCGACGTATGCGTGTTGTTTGTGGGCA--TGTGTTAGAGTGTTA--GAGGGCCGTGGGGCCTCACAGCACGTGTGTGCACAATCTGGCGTGTGT----------GTGTGTCCCCCACCCCAG-
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62609918 139 + 169600520 CAATGAGGGTGCTG-------------GGCGGGGAAGGCAGCGTATGCGTGTTTTTTGTGGGCATGTGTGTTAGTGTGTGCATGCAGGCAGTGGGGCCTCACAGCATGTGTGTGCACACTCCGGCGTGTGC--------GTGTGTGTCCCCCACCCTCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106530310 139 - 171882078 CAATGAGGGTGCTG-------------GGCGGGGAAGGCAGCGTATGCGTGTTTTTTGTGGGCATGTGTGTTAGTGTGTGCATGCAGGCAGTGGGGCCTCACAGCATGTGTGTGCACACTCCGGCGTGTGC--------GTGTGTGTCCCCCACCCTCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6264185 139 -   6271500 CAATGAGGGTGCTG-------------GGCGGGGAAGGCATCGTATGCGTGTTGTTTGTGGGCATGTGTGTTAGTGTGTGCATGCAGGCCGTGGGGCCTCACAGTATGTGTGTGCACACTCCGGTGTGTGC--------GTGTGTGTCCCCCACCCTCAG
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr26               7724258 150 +  58131712 CAGTGAGGATGCTGGGCACTGGGAGGTGGCAGGGAAGGAGGCGTATGCGTG----TTGTGGGTATGTGTGTTAGTGTGGCCATGCCAGCAGTGGGGCCTCATAGCATGTGTGTGCGCACCCCAGCATGTGC------GTGTGTGTGTCCCCCAACCCCAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1114999 139 +   1458659 CAATGAGGGTGCTG-------------GGCGGGGAAGGCAGCGTATGCGTGTTTTTTGTGGGCATGTGTGTTAGTGTGTGTATGCAGGCAGTGGGGCCTCACAGCATGTGTGTGCACACTCCGGCGTGTGC--------GTGTGTGTCCCCCACCCTCAG
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378235            5629649 160 -   6062622 CGGTGAGGGTGCTGGGCACCGGGAGGTGGCGGGGAAGGAGGCGTATGCGTGTTGTTTGTGGGCATGTGTGTTAGCGTGTGCATGCAGGCCATGGGGCCTCACAGCATGTGTGTGCACGCCCAGGCgtgtgtgtgtgtgtgtgtgtgtgtCCCACCCCCAG
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       900120 8194 +   1024465 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       326476 1445 +   4111199 M
e cerAty1.NW_012001384v1      5156640 977 +   5160157 M
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=399582.000000
s hg38.chr15_KI270850v1_alt    264069 187 +    430880 GCCT-GCCCCACCCATGCATGGGACCTGCCATG-TGATTTGATGCTGTCTTTCAGAATCACTATCAGTGGCCCCTGAGGAGCATCAGCCATGGTAGGTACATGCCTCACTGCCTGCTGCATGAATGGTCTGCCCGCCCCGCTGCCCCAGCTCCACACAGGGGGCATACCTGGAGCCTCAGAGCCAGGCT
s gorGor5.CYUI01015946v1       362642 187 +    378907 GCCT-GCCCCACCCATGCATGTGACCTGCCATG-TGATTTGAAGCTGTCTTTCAGAATCACTATCAGTGGCCCCTGAGGAGCATCAGCCATGGTAGGTACATGCCTCACTGCCTGCTGCATGAATGGTCTGCCTGCCCCGCTGCCCCAGCTCCACACAGGGGGCATACCTGGAGCCTCAGAGCCAGGCT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62610057 185 + 169600520 G-CT-GCCCCA-CCATGCGTGTGACCTGCCATG-TGATTTGATGCTGTCTTTCAGAATCACTATCGGTGTTCCCTGAGGAGCGTCAGCCTTGGTAGGTACATGCTTTGCTGCCTGCTGCATGAAAGGTCTGCCTGCCCCGCTGCCCCAGCCCCACATGGGGGGCCTACCTGGGACTTCAGAGCCAGGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106530449 185 - 171882078 G-CT-GCCCCA-CCATGCATGTGACCTGCCATG-TGATTTGATGCTGTCTTTCAGAATCACTATCGGTGTTCCCTGAGGAGCGTCAGCCTTGGTAGGTACATGCTTTGCTGCCTGCTGCATGAAAGGTCTGCCTGCCCCGCTGCCCCAGCCCCACATGGGGGGCCTACCTGGGACCTCAGAGCCAGGCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6264324 187 -   6271500 GCCT-GCCCCACCCATGCGTGTGACTTGCCATG-TGATTTGATGCTGTCTTTCAGAATCATTATCGGTGTTCCCTGAGGAGCGTCAGCCTTGGTAGGTACATGCCTTGCTGCCTACTGCATGAAAGGTCTGCCCGCCCCGCTGCCCCAGCTCCACAGGGGGGGCACACCTGGGACCTCAGAACCAGGCT
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr26               7724408 187 +  58131712 G-CCTGCCCCACCCATGCATGTGAGCTGCCATGTTGATTTGATGCTGTCTTTCAGAATCACTATCAGTGGCCCCTGAGGAGCATCAGCCATGGTAGGTACATGGCTTGCCGCCTGCTGCATGAATGGTGTTCCCGCCCCACTGCACCAGCTCCACAC-GGGGGCACACCTGGGACCTCAGATCCAGGAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1115138 185 +   1458659 G-CC-GCCCCA-CCATGCGTGTGACCTGCCATG-TGATTTGATGCTGTCTTTCAGAATCACTATCGGTGTTACCTGAGGAGCGTCAGCCTTGGTAGGTACATGCTTTGCTGCCTGCTGCATGAAAGGTCTGCCTGCCCCGCTGCCCCAGCCCCACATGGGGGGCATACCGGGGACCTCAGAGCCAGGCT
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378235            5629809 188 -   6062622 GCCT-GCCCCACCCGTGCGTGTGAACTGCCATGTTGATTTCGTGCTGTCTTTCAGAATCACTATCAGTGACCCCTGAGGAGCGTCAGCCATGGTAGGTACATGCCTCACCGCCTGCTGCATGAATGGTGTGTCTGCCCCGCTGCACCAGCTCCACAAGGGGCACGCACCTGGGACCTCAGAGCCAGGCT
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       900120 8194 +   1024465 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       326476 1445 +   4111199 M
e cerAty1.NW_012001384v1      5156640 977 +   5160157 M
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25714108   0 -  26350515 C

a score=485680.000000
s hg38.chr15_KI270850v1_alt    264256 182 +    430880 GCCTGCCCCTCCCTTCTAGAGCTGCAGCCTTGCTCTTTCCTCTTTCTGTCCTTGTGCTGCTGGCTGTCTCACTTCCC-TCCCTGCCAGCCACAGGACTCAGTGCCACTGCTCAAGGTCTCCATGGCTGAGCCTGGGGGCTCTTACAACAGGCTCCATGCCGAAGGTGGCAGA-----------TGTGGAACCAT--
s panTro5.chrY               25714108 169 -  26350515 GCCTGCCCCTTCCTTCTGGAGCTGCAGACTTGCTTTTTCCTTTTTCTGTCCTTGTGCTGCTGGCTGTCTCACTTCCC-TCCTTGTGAGCCATGGGACTCAGTGCCACTGCTCAAGGTCTCCATGGCTGAGCCTGGGGGCTC-------------CATGCCCAACCTGGCAGA-----------CATGGAACCAT--
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       362829 182 +    378907 GCCTGCCCCTCCCTTCTAGAGCTGCAGACTTGCTCTTTCCTCTTTCTGTCCTTGTGCTGCTGGCTGTCTCACTTCCC-TCCCTGCCAGCCACAGGACTCAGTGCCACTGCTCAAGGTCTCCATGGCTGAGCCTGGGGGCTCTTACAACAGGCTCCATGCCCAAGGTGGCAGA-----------TGTGGAACCAT--
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62610242 182 + 169600520 CCCTGCCCCTCCCTTCTGGAGCTGCAGACTTGCTCTTTGCTCTTTCTGTCTTTGTGCTGCTGGCTGTCTCACTTCTC-TCCCTGCGAGCCATGGGACTCAGTGTCACTGCTCCAGGTCTCCATGGCTGAGCCTGGGGGCTCTTAGAACAGGCTCCATGCCCAAGCTGGCAGA-----------TGTGGAGCCAT--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106530634 182 - 171882078 CCCTGCCCCTCCCTTCTGGAGCTGCAGACTTGCTCTTTGCTCTTTCTGTCTTTGTGCTGCTGGCTGTCTCACTTCTC-TCCCTGCGAGCCATGGGACTCAGTGTCACTGCTCCAGGTCTCCATGGCTGAGCCTGGGGGCTCTTAGAACAGGCTCCATGCCCAAGCTGGCAGA-----------TGTGGAGCCAT--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6264511 182 -   6271500 CCCTGCCCCTCCCTTCTGGAGCTGCAGACTTGCTCTTTCCTCTTTCTGTCCTTGTGCTGCTGGTTGTCTCACTTCCC-TCCCTGCGAGCCACGGGACTCAGTGCCACTGCTCAAGGCCTCCATGGCTGAGCCTGGGGGCTCTTAGAATAGGCTCCATGGCCAAGCTGGTAGA-----------TGTGGAACCAT--
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr26               7724595 193 +  58131712 CCCTGCCCCTCCTTTCTGGAGCTGCAGATTTGCTCTTTCCTCTTTCTGTCCTCATGCTG-TGGCTCTGTCACCTCCCTTCCCTGTGAGCCATGGGACTCAGCACCACTGCCCATGGCCTCCATGGCTGAGCCTGGGTGCTCTTGGAACAGGCTCCATGCCCAAACTGGCAGACATGGGTGCTCTCTGGAGCCAT--
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1115323 182 +   1458659 CCCTGCCCCTCCCTTCTGGAGCTGCAGACTTGCTCTTTGCTCTTTCTGTCTTTGTGCTGCTGGCTGTCTCACCTCCC-TCCCTGCGAGCCATGGGACTCAGTGTCACTGCTCAAGGCCTCCATGGCTGAGCCTGGGGGCTCTTAGAACAGGCTCCATGCCCAAGCTGGCAGA-----------TGTGGAGCCAT--
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378235            5629997 183 -   6062622 CCCCACCCTTCCCTTCTGCAGCTGCAGACTTGCTCTTTTCTCTTTCTGTCCTTGCGCCACTGGC--TCTCACCTCCCTTCCCAGCGAGCCTCGGGACTCAGTGCCACTGCCCAGGGCCTCCATGGCTGAGCCTAGGGGCCCTTGGAACAGGCTCCGCACTCAACCTGGCAGA-----------CATGGGTGCTCTC
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       900120 8194 +   1024465 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       326476 1445 +   4111199 M
e cerAty1.NW_012001384v1      5156640 977 +   5160157 M
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=1354892.000000
s hg38.chr15_KI270850v1_alt    264438 372 +    430880 CAGAGAGGGCACAGAGCTCATGGTTTATGGTGTAGGGGCTGGGAGCTTGGAGGGGGTTGTGTGGGGGGCTGGACTC---AGGCGGCCAGAGGCCTGGGCACATCATCCTGGGCACGCCGTACCTGTCATGCAGTCTGAGTCATGCTGCCAGGGCA-GGTATCCAGCTCCCAGCCTGGGAGTGCCGAGAGCCAAATCCACTGCAGATTAGGGGTGATAGTCACGGTCCCACGTCCTCTATCTGTCAGCAATCCAGTGGTGATCTAGGATAAAAGCCTGAGAGTCCTATACACGCGGTCATCCCACAACACACTTCATAGGCCATGCAAGGACACACAGCCCCCTTCCCTCCCTCCCAGGTACCATCACAGCTGCTAG
s panTro5.chrY               25714277 372 -  26350515 CAGAGAGGGCACAGAGCTCATGGTTTATGGTGTAGGGGCTGGGAGCTTGGAGGGGGTTGTGTGGGGGGCTGGACTC---AGGTGGCCAGAGACCTGGGAACATCATACTGGGCACGCTGTACCTGTCGTGCAGTCTGAGTCATGCTGCCAGGGCA-GGGATCCAGCTGCCAGCCTGGGAGTGCCAAGAGCCAAATCCACTGCAGATTAGGGGTGGTAGTCAGGGTCCCACGTCCTCTATCTGTCAGCAATCCAGTGGTGATCTAGGATAAAAGCCTGAGAGTCCTATACACACGGTCATCCCACAACACACTTCATAGGCCATGGAAGGACACACAGCCCCCTTCCCTCCTTCCCAGGTACCATGATAGCTGCTAG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       363011 374 +    378907 CAGAGAGGGCACAGAGCTCATGGTTTATGGTATGGGGGCTGGGAGCTTGGAGGGGGTTGTGTGTGGGGCTGGACTC-TGAGGCGGCCAGAGGCCTGGGCACATCATCCTGGGCACGCCGTACCTGTCATGCTGTCTGAGCCATGCTGCCAGGGCA-GGTATCCAGCTCCCAGCCTGGGAGTGCCGAGAGCCAAATCCACTGCAGATTAGGGGTGATAGTCAGGGTCCCACCTCCTCTATCTGTCAGCAATCCAGTGGTGATCTAGGATAAAAGCCTGAGAGTCCAATACACACGGTTATCCCACAACACACTTCATAGGCCATGCAAGGACACACAGCCCCCTTCCCTCCCTCCCAGGTACCATCACAGCTGCTAG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62610424 374 + 169600520 CAGAGAGGACACAGAGCTTGTGGTTTATGGTGTAGGGGCTGGGAGCTTGGAGGGGGTTGTGTGTGGGGCTGGAATC-TGAGGCGGTCAGAGGTCTAGGCACATCATCCTGGGCACGCTGTACCTGTCATGCAGTCTGGGTCATGCTGCCAGGGCA-GGTATCCAGCTCCCAGGCTGGGAGTGCTGAGAGCCAAATCCACTGCAGATTAAGGATGATAGTTAGGGTCCCACATCCTCCAACTGTCAGCAATCCAGTGGTGATCGAGGATAAAAGCCTGAGAGTCCCATACACACGGTCATCCCACAACACACTTCACAGACCGGGCAAGGACACACAGCCCCGTTCCCTCCCTCCCAGGTACCATCATAGCTGCTCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106530816 374 - 171882078 CAGAGAGGACACAGAGCTCGTGGTTTATGGTGTAGGGGCTGGGAGCTTGGAGGGGGTTGTGTGTGGGGCTGGAATC-TGAGGCGGTCAGAGGTCTAGGCACATCATCCTGGGCACGCTGTACCTGTCATGCAGTCTGGGTCATGCTGCCAGGGCA-GGTATCCAGCTCCCAGGCTGGGAGTGCTGAGAGCCAAATCCACTGCAGATTAAGGATGATAGTTAGGGTCCCACATCCTCCAACTGTCAGCAATCCAGTGGTGATCGAGGATAAAAGCCTGAGAGTCCCATACACACGGTCATCCCACAACACACTTCACAGACCGGGCAAGGACACACAGCCCCGTTCCCTCCCTCCCAGGTACCATCATAGCTGCTCG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6264693 374 -   6271500 CAGAGAGGACACAGAGCTCATGGTTTATGGTGTAGGGGCTGGGAGCTTGGAGCGGGTTGTGTGTAGGGCTGGACTC-TGAGGCGGTCAGAGGCCTAGGAACATCATCCTGGGCACGCTGTACCTGTCATGCAGTCTGAGTCATGCTGCCAGGGCA-GGTATCCAGCTCCCAGCCTGGGAGTGCTGAGAGCCAAATCCACTGCAGATTCAGGGTGATAGTTAGGGTCCCACGTCCTCCAACTGTCAGCAATCCAGTGGTGATCTAGGATAAAAGCCTGAGAGTCCTATATACACAGTCGTCCCACAACACACTTCACAGACGAGGCAGGGACACACAACCCCCTTCCCTCCCTCCCAGGTACCATCATAGCTGCTAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1      5157617 374 +   5160157 CAGAGAGGACACAGAGCTCATGGTTTATGGTGTAGGGGCTGGGAGCTCGGAGGGGGTTGTGTGTAGTGCTGGACTC-TGAGGCGGTCAGAGGCCTAAGCACATCATCCTGGGCACGCTGTACCTGTCATGCAGTCTGAGTCATGCTGCCAGGGCA-GGTATCCAGCTCCCAGCCTGGGAGTGGCGAGAGCCAAATCTACTGCAGATTAACGGTGATAGTTAGGGTCCCACGTCCTCCAACTGTCAGCAATCCAGTGGTGATCGAGGATAAAAGTCTGAGAGTCCTATATACACAGTCATCCCACAACACACTTCACAGACCAGGCAGGGACACACAACCCCCTTCCCTCCCTCCCAGGTACCATCATAGCTGCTAG
i cerAty1.NW_012001384v1    M 977 N 0
s chlSab2.chr26               7724788 373 +  58131712 CAGAGAGGGCATAGAGCTCATGGTTTATGGTGTAGGGGCTGGGAGCTTGGAGGGCGT--TGTGTGGGGCTGGACTC-TGAGGAGGCCAGAGGTCTAGGAACGTCATCCTGGACACGCCATACCGGTCGTGCAGTCTGAGTCATGCTGCCAGGGCAGGGCATCCAGCTCCCAGCCTGGGAGTGCCGAGAGCCGAATCCACTGCAGAGCAGGGGTGATAGTCAGGGTCCCACCTCCTCTATCTGTCAGCAATCCAGTGATGATCTAGGATAAAACCTTAAGAGTCCCATACACATGGTCATCCCACAACACACCTCACAGGCCAGGCAGGGACACACAGCCCACTTCCCATCCTCCCGGGTACCATCATAGCTGCTAG
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1115505 375 +   1458659 CAGAGAGGACACAGAGCTCGTGGTTTATGGTGTAGGGGCTGGGAGCTTGGAGGGGGTTGTGTGTGGGGCTGGAATC-TGAGGCAGTCAGAGGTCTAGGCACATCATCCTGGGCACGCTGTACCTGTCATGCAGTCTGGGTCATGCTGCCAGGGCAGGGTATCCAGCTCCCAGCCTGGGAGTGCTGAGAGCCAAATCCACTGCAGATTAAGGGTGATAGTTAGGGTCCCACATCCTCTAACTGTCAGCAATCCAGTGGTGATCGAGGATAAAAGCCTGAGAGTCCCATACACACGGTCATCCCACAACACACTTCACAGACCGGGCAGGGACACACAGCCCCCTTCCCTCCCTCCCAGGTACCATCATAGCTGCTAG
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378235            5630180 370 -   6062622 TGGAGAGGGCAGAGAGCTCATGGTTTACGGTGTAAGGGCTGGGAGCTTGGAGGCGGTTGTGTGTGGGGCTGGACTCTTGAGGCGGCCAGAGGCCTAGGAATATCATCCTGGGCATGCTGTGCCTGTTGTGCAGTCTGAGTTATGCTGCCGGGACAGGGCATCCAGCTCCCAGCCTGGGAGCGTCGAGAACCAAATCCACTGCAGAGCAGGGGTGATAG----AGTCCCAC--CCTCTATCTGCAGACAATCCAGTGGTGATCTAGGGTAAAAGCTTTAAAGTCCCATATACACGGTCATTCCACGACACATCTCACAGGCCAGGCAGGGACACACAGCCCCCTTCCCTCCCTCCTAGGTACCGTCATAGCTGCTAG
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       900120 8194 +   1024465 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       326476 1445 +   4111199 M
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=1039534.000000
s hg38.chr15_KI270850v1_alt    264810 409 +    430880 CATGTGACTGAAGGCTGGGTCCCTGGCCAGCACTACTGAAGCACTACTGCCAGCCAGC----AGGCTCACGGACCTTGGCCTGTT--GCTCCTAGGGGTCACCTGTGCTATTCAGCCAAGGAGACCACAGTGCTTGCTGGCCCAGCTGAGCTCCGCCTAGCGAGCCCA--CCTGCCTTTCCTGCCGCGGAGTCTCCCTCTTCTGCTTTTCCCAGCAGGAAGGGCCCAGCCTCACCTATGCAACCTGCAG-----CCCCCCGCCAACCAGTTGAGGTTCCCCTCTT-AGACTTATAAGTCTATGGGCAGTGGCATCTAGCTACCTGCCCTCCCTGCCTTCCCCAGGGTCCCTTCAGTGGACCCTGGGCTTTCTGACTGCCCAGAGAGGGGCCTCTGGCGCTCACTCCAGCCAGCCAT-CCCTTAC
s panTro5.chrY               25714649 403 -  26350515 CATGCGACTGAAGGCAGGGTCCCTGGC---CCCTGCTGAAGCACTACTGCTGGTCAGC----AGGCTCACACACCTTGGCCTGTT--GCTTCTAGGGGTCACCTGTGCTATTCAGCCAAGGGGACCACAGTGCATGCTGGCCCAGCTGAGCTCCGCCTAGAGAGCTCA--CTTCCCTTCCCTGCCACGGAGTCTTCCTCTTCTGCTTTTCCCAGCAGGAGGGGCCCAGCCTCACCTATGCAACCTTCAG-----CCCTCCACCAACCAGTTGAGGCTCCCCTGTT-AGACTTAGAAGTCTATGGCCAATGGCATCAAGCTACCTGCCCTTCCTGCCTTCCCCAGGGTTCC-TCAGAAGACCCTGGGCTTTCAGATGGCCC--AGAGGGGCCTCTGGTACTCACTCCAGCCAGCCAT-CCCTTAT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       363385 409 +    378907 CGTGTGACTGAAGGCTGGGTCCCTGGCCAGCACTACTGAAGCACTACTGCCAGCCAGC----AGGCTCACGGACCTTGGCCTGTT--GCTCCTAGGGGTCACCTGTGCTATTCAGCCAAGGAGACCACAGTGCTTGCTGGCCCAGCTGAGCTCCGCCTAGCGAGCCCA--CCTGCCTTTCCTGCCACGGAGTCTCCCTCTTCTGCTTTTCCCAGCAGGAAGGGCCCAGCCTCACCTATGCAACCTGCAG-----CCCCCCGCCAACCAGTTGAGGCTCCCCTCTT-AGACTTATAAGTCTATGGCCAGTGGCATCTAGCTACCTGCCCTCCCTGCCTTCCCCAGGGTCCCTTCAGTGGACCCTGGGCTTTCTGACTGCCCAGAGAGGGGCCTCTGGCGCTCACTCCAGCCAGCCAT-CCCTTAT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62610798 403 + 169600520 TGTG-GACTGAAGACAGGGTCCCTGGC---CCCCGCTGAAGCACTACCGCTGACCAGC----AGGCTCACTCACCTTGGCCTGTT--GCTCCTAGGGGTCTCCTGTGCTATTCATCCAAGGAGACCACAGTGCCTCCTGGCCCAGCCAAATCCTGCCTAGCGAGCCCA--CCTGCCTGTCCTGCCACGGACTCTCCCTCTTCTGCTTTTCCCATCATAAAGGGCCCAGCGTCACCTATGCAACCTGTAG-----CCCCCTGCCTACCAGTTGAGGCTCCCCTTTT-GGACTTATAACTGTATGGCTGGTGGCATCCAGCTACCTGCCCTCCCAGCCTTCCCCAGGGT-CCTTCAGAGGACCCTGAGCTTTCTGCCCACCC--AGAGGGACCTCTGGTGCTCACTCCAGCCAGCCATCCCCTTAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106531190 403 - 171882078 TGTG-GACTGAAGACAGGGTCCCTGGC---CCCCGCTGAAGCACTACCGCCGACCAGC----AGGCTCACTCACCTTGGCCTGTT--GCTCCTAGGGGTCTCCTGTGCTATTCATCCAAGGAGACCACAGTGCCTCCTGGCCCAGCCAAATCCTGCCTAGCGAGCCCA--CCTGCCTGTCCTGCCACGGACTCTCCCTCTTCTGCTTTTCCCATCATAAAGGGCCCAGCGTCACCTATGCAACCTGCAG-----CCCCCTGCCTACCAGTTGAGGCTCCCCTTTT-GGGCTTATAACTGTATGGCCGGTGGCATCCAGCTACCTGCCCTCCCAGCCTTCCCCAGGGT-CCTTCAGAGGACCCTGAGCTTTCTGCCCACCC--AGAGGGACCTCTGGTGCTCACTCCAGCCAGCCATCCCCTTAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6265067 393 -   6271500 TGTG-GACTGAAGACAGGGCCTGTGGC---CCCCGCTGAAGCACTACCGCCGACCAGCCAGTGGGCTCACTCACCTTGGCCTGTT--GCTCCTAGGGGTCGCCTGTGCTATTCAGCCAAGGAGACCACAGTGCCTGTTGGCCCAGCCGAGCTCCGCCTAGCGAGCCCA--CCTGCCTGTCCTGCCACGGACTCTCCCTCTTCTGCTTTTCCCATCATACAGGGCCCAGCCTCACCTATGCAACCTGCAG-----CCCCCTGCCTA--------------CCTTTT-GGACTTATAACTGTATGGCCAGTGGCATCAGGCTACCTGCCCTCCCAGCGTTCCCCAGGGT-CCTTCAGAGGACCCTGAGCTTTCTGCCCACCC--AGAGGGGCCTCTGGTGCTCACTCCAGCCAGCCATCCCCTTAT
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr26               7725161 410 +  58131712 CATGTGACCAAAGGCAGGGTCCCTGGC---CCCCGCTGAAGCATTACCACAGGCCAGC----GGGCTCACACAACTTGGCCTGTT--GCTTCTAGGGGTCTCCTGTGCTATTCAGCCAAGGGGACCACAGTGCCTGCTGGCCCAGCTGACCTCCGCCTAGCGAGCCCA--CCTGCCTCTCCTGCCATGGACTCTCCCTCTTCTGCTTTTCCCAGCAGGAAGGGCCCAGCCTCACCTACGAAACTTGTAGCATTCCCACCTGGCAACCAGCTGAGGCTCCCCTCTTAAGACTTACAAGTCTATGGCCAGTGGCATCCAGCTACCTGCCCTCCCTGCCTTCCCCAGGCTCCCTTCAGAGGACCCTGGTCTTTCTGACCACCC--AGAGGGGCCTCTGGCACACACTCCAGCCATCCAT-CCCTTAT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1115880 403 +   1458659 TGTG-GACTGAAGGCAGGGTCCCTGGC---CCCCGCTGAAGCACTACCGCCGACCAGC----AGGCTCACTCACCTTGGCCTGTT--GCTCCTAGGGGTCTCCTGTGCTATTCAGCCAAGGAGACCACAGTGCCTGCTGGCCCAGCCAAATCCTGCCTAGCGAGCCCA--CCTGCCTGTCCTGCCACGGACTCTCCCTCTTCTGCTTTTCCCATCATAAAGGGCCCAGCCTCACCTATGCAACCTGCAG-----CCCCCTGCCTACCAGTTGAGGCTCCCCTTTT-GGACTTATAACTGTATGGCCGGTGGCATCCGGCTACCTGCCCTCCCAGCCTTCCCCAGGGT-CCTTCAGAGGACCCTGAGCTTTCTGCCCACCC--AGAGGGACCTCTGATGCTCACTCCAGCCAGCCATCCCCTTAT
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378235            5630550 393 -   6062622 GGTGTGACTGAAGGCAGTGTCCCTGAC---CCCAGCTGAAGCACCATAGCCAGCCAGC----GGATTCACACACCTTGGCCTGTTACACTCCTAGG--------GTGCCATTCAGCCAAGGGGACAACTGTGCCTGCTGGCCGGGCTGAGCTCCGCCCAGCAATCCCACCCCCACTTCTCCTGCCACTGACTCTCACTCTTCTGCTTTTCCCAGCAGGAAGGGCCCAGCCTCACCTACGCGACCTGCAG-----CCCCCCG---ACCAGCTGAGGCTCCCCTCTT-AGACTTATAAGTCTATGGCTACTGGCATCCAGCTGCCTGCCCTCCCTGCCTCCCCCAGGGTCCCTTCAGAGGGTCCTGGGTTTTCTGATCACCC--AGAGGGGCCTCCAGTGCTCCCTCCAGCCAT-----CCCTTTT
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       900120 8194 +   1024465 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       326476 1445 +   4111199 M
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=284063.000000
s hg38.chr15_KI270850v1_alt    265219 85 +    430880 AGCTTCACCATTTTGGTTCAAGCAGTGTTCCT--TCTGTCAGGCTT-GGTGGCTGTTGGGTGGGGCTCCCC-AAGCAAGAGGTGGCCCT
s panTro5.chrY               25715052 85 -  26350515 AGCTTCACCATTTTGGTTCAAGCAGTGTTCCT--TCTGTCAGGCTT-GGTGGCTGTTGGGTGGGGCTCCCC-AAGCAAGAGGTGGCCCT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       363794 85 +    378907 AGCTTCACCATTTTGGTTCAAGCAGTGTTCCT--TCTGTCAGGCTT-GGTGGCTGTTGGGTGGGGCTCCCC-AAGCAAGAGGTGGCCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62611201 87 + 169600520 AGCTTCACTATTTTGTTTCAAGCAGTGTTCCTTCTCTATGAGGAGT-GGTGGCTGTTGGGTGGGGCTCCCC-AAGCAAGAGGTGGCCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106531593 87 - 171882078 AGCTTCACTATTTTGTTTCAAGCAGTGTTCCTTCTCTATGAGGAGT-GGTGGCTGTTGGGTGGGGCTCCCC-AAGCAAGAGGTGGCCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6265460 87 -   6271500 AGCTTTAATATTTTGTTTCAAGCAGTGTTCCTTCTCTATGAGGAGT-GGTGGCTGTTGAGTGGCGCTCCCC-AAGCAAGAGGTGGCCCT
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr26               7725571 83 +  58131712 AGCTTCACCATTTTGGTTCAAGCAGTGTTCCTTATC----AGGCCA-GGTGGCAGTTGGGTGGGGCTCCCC-AAGCAAGAGGTAGCCCT
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1116283 87 +   1458659 AGCTTCACTATTTTGTTTCAAGCAGTGTTCCTTCTCTATGAGGAGT-GGTGGCTGTTGGGTGGCGCTCCCC-AAGCAAGAGGTGGCCCT
i manLeu1.NW_012105520v1    C 0 I 3583
s colAng1.NW_012116021v1       327942 88 +   4111199 AGCTTCACCATTTTGTTTCAAGCAGTGTTCCTTCTCTATCAAGCCTGGGTGGCTGTTGGATGGGGCTCCCC-AAGCAAGAGGTGGCCCT
i colAng1.NW_012116021v1    M 1445 C 0
s saiBol1.JH378235            5630943 88 -   6062622 AGCTTCGTCCTCCTGGTTCAAGCAGTGTTCTTTCCGCATCAGGCCT-GATGGCTGTTGTGTGGGGCGCCCCAAAGCAAGGGGTGGCCCC
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       900120 8194 +   1024465 I
e otoGar3.GL873530            8739860  0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=241063.000000
s hg38.chr15_KI270850v1_alt    265304 92 +    430880 GGGCCAGTGGGTTGGAAGATGGGGTGACCACAGAAGAGGGAAGCCG-GGGGA-GTTGAGCATTGGTCTGAACTGTGGGTGGACTGCCTGGGTGC
s panTro5.chrY               25715137 91 -  26350515 GGGCCAGTGGGTTGGAAGAT--GGTGACCAGAGAGGAGGGAACCCT-GAGGAGGTTGAGCATTGGTCTGAACTGTGGGTGGACTGCCTGGGTGC
i panTro5.chrY              C 0 I 9
s gorGor5.CYUI01015946v1       363879 92 +    378907 GGGCCAGTGGGTTGGAAGATGGGGTGACCAGAGAAGAGGGAAGCCG-GGGGG-GTTGAGCATTGGTCTGAACTGTGGGTGGACTGCCTGGGTGC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62611288 89 + 169600520 GGGCCAGTGGGTTGGAAGAC--GGTGACCAGGGAAGAGGGAAGTCC-TGGGG-GCTG-GCATTGGTCTGAACTGTGGGTGGACTGCCTGGGTGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106531680 89 - 171882078 GGGCCAGTGGGTTGGAAGAC--GGTGACCAGGGAAGAGGGAAGTCC-TGGGG-GCTG-GCATTGGTCTGAACTGTGGGTGGACTGCCTGGGTGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6265547 91 -   6271500 GGGCCAGTGGGTTGGAAGACAGGGTGACCAGAGAAGAGGGAAGTCC-TGGGG-GCTG-GCATTGGTCTGAACTGTGGGTGGACTGCCTGGGTGC
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr26               7725654 92 +  58131712 -GGCCAGTGGGTTGGAAGACAGGGTGACCAGAGAAGAGAGAAGCCCAAGGGG-GCTGAGCATTGGTCTGAACTGTGGGTGCACTGCCTGGGTGC
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1       328030 92 +   4111199 GGGCCAGTGGGTTGGAAGACAGGGTGACCAGAGAAGAGGGAAACCCAAGTGG-GCTG-GCATTGGTCTGAACTGTGGGTGGACTGCCTGGGTGC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5631031 93 -   6062622 AGGCCAGTGGGTTGGAAGACAGGGTGACCAGAAAAGAGGGAAGCTCGAGGGG-GCCGAGCATCAGCCTCAACTGCAGGTGCACTGCCTGGGTGC
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       900120 8194 +   1024465 I
e otoGar3.GL873530            8739860  0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e nomLeu3.chr6               18851681 10347 - 121039945 I

a score=339043.000000
s hg38.chr15_KI270850v1_alt    265396 156 +    430880 CATGAGAGAGGCCAGTGTGTGTGGGGTGGGGA-GGACCGCCACAGCCCCCAGGCACTACCTATGAAGCTCTAGCTTCTCCCTCCATCTTCCTCCCCTTTCCCTTCCAGCCCCTCTTTTCCAGGAACC-TTGCCACGCCCACACCTACGCCTTCCCCTT
s gorGor5.CYUI01015946v1       363971 156 +    378907 CATGAGAGAGGCCAGTGTGTGTGGGGTGGGGA-GGGCCGCCACAGCCCCCAGGCACTACCTATGAAGCTCCAGCTTCTCCCTCCATCTTCCTCCCCTTTCCCTTCCAGCTCCTCTTTTCCAGGAACC-TTGCCACGCCCACACCTACGCCTTCCCCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62611377 156 + 169600520 CATGAGAGAGGTCAGCGTGGGTGGGGTGGGGA-GGGCCGCCGCAGCCCCCGGGCACTTCCTATGAAGCTCTGGCTTCTCCCTCCATCTTCCTCCCCTTTCCCTTCCAGCCTCTCTTTTCCAGGAACC-TTGCCATGCCCACACTTACACTCTCCCCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106531769 156 - 171882078 CATGAGAGAGGTCAGCGTGTGTGGGGTGGGGA-GGGCCGCCGCAGCCCCCGGGCACTTCCTATGAAGCTCTGGCTTCTCCCTCCATCTTCCTCCCCTTTCCCTTCCAGCCTCTCTTTTCCAGGAACC-TTGCCATGCCCACACTTACACTCTCCCCTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1      6265638 156 -   6271500 CATGAGAGAGGTCAGCGTGTGTGGGGTGGGGA-GGGCCGCCACAGCCCCCGGGCACTACCTATGAAGCTCTGGCTTCTCCCTCCATCTTCCTCCCCTTTCCCTTCCAGCCTCTCTTTTCCAGGAACC-TTGCCATGCCCACACTTACACCCTCCCCTT
i macNem1.NW_012011056v1    C 0 N 0
s chlSab2.chr26               7725746 156 +  58131712 CATGGGTGAGGCCAGCGTGTGTGGGCTGGGGAGGGGCCACCGCAGTCCACAGGCACTACCTGTGAAGCTCCGGCTCCTCCCTCCATCTTCCTCCCCTTTCCCTTCCAGC--CCCTTTTCCAGGAACCTTTGCCACACCCGCACCTGCGCCCTCCCCTC
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1       328122 156 +   4111199 CATGAGAGAAGCCAGCGTGTGTGGCGTGGGGA-GGGCCGCCACAGCCCCCGGGCACTACCTATGAAGCTCTGGCTTCTCCCTCCATCTTCCTCCCCTTTCCCTTCCAGCCTGTCTTTTCCAGGAGCC-TTGCCATGCCCACACTTACACCCTCCCCTT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5631124 150 -   6062622 CGTGTGAGAGGCCAGTGTGTGTGGGGTGGGGA-GGGCCGCAGCAGCCCCCAGGCACTACCTGTGAAGCTCCGCCTCCTCCCTCCATCTTCCCCCCCTTTCCCTTCCAGTTCCTCTTTTCCAGGAATC-T---CACACCCTCCCCT---CCCCCACCTT
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       900120 8194 +   1024465 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25715228   9 -  26350515 I

a score=2100.000000
s hg38.chr15_KI270850v1_alt    265552 1 +    430880 C
s gorGor5.CYUI01015946v1       364127 1 +    378907 C
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62611533 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106531925 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7725902 1 +  58131712 C
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1       328278 1 +   4111199 C
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5631274 1 -   6062622 C
i saiBol1.JH378235          C 0 I 2503
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       900120 8194 +   1024465 I
e otoGar3.GL873530            8739860 0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e nomLeu3.chr6               18851681 10347 - 121039945 I
e panTro5.chrY               25715228 9 -  26350515 I

a score=16980.000000
s hg38.chr15_KI270850v1_alt    265553 9 +    430880 CCGGCTCTC
s gorGor5.CYUI01015946v1       364128 9 +    378907 CTGGCTCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18862028 9 - 121039945 CCAGCTCTT
i nomLeu3.chr6              I 10347 C 0
s rheMac8.chr7               62611534 9 + 169600520 CCGGCCCTC
i rheMac8.chr7              C 0 I 3291
s macFas5.chr7              106531926 9 - 171882078 CCGGCCCTC
i macFas5.chr7              C 0 I 3165
s chlSab2.chr26               7725903 9 +  58131712 CCAGCCCTC
i chlSab2.chr26             C 0 I 1556
s colAng1.NW_012116021v1       328279 9 +   4111199 CCGGCCCTC
i colAng1.NW_012116021v1    C 0 I 4105
s saiBol1.JH378235            5633778 9 -   6062622 CCAGCTTTT
i saiBol1.JH378235          I 2503 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       900120 8194 +   1024465 I
e otoGar3.GL873530            8739860 0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e panTro5.chrY               25715228 9 -  26350515 I

a score=13374.000000
s hg38.chr15_KI270850v1_alt    265562 42 +    430880 AGATGATGGTGGTGTTTATCTCCCTGTTCTTGGGAGCCCAAA--
s gorGor5.CYUI01015946v1       364137 42 +    378907 AGATGATGATGGTGGTTATCTCCCTGTTCTTGGGAGCCCAAA--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18862037 42 - 121039945 CGATGATGGTGATGTTTATCTCCCTGTTCTCGGCAGCCCGAA--
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378235            5633787 44 -   6062622 AAATAATGGTGATCTTCACCTCATCGTTCTCGTCAGCCCGGTAA
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       900120 8194 +   1024465 I
e otoGar3.GL873530            8739860  0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       328288 4105 +   4111199 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e chlSab2.chr26               7725912 1556 +  58131712 I
e macFas5.chr7              106531935 3165 - 171882078 I
e rheMac8.chr7               62611543 3291 + 169600520 I
e panTro5.chrY               25715228  9 -  26350515 I

a score=73638.000000
s hg38.chr15_KI270850v1_alt    265604 108 +    430880 AAGAATGGCATGCAGGGGTTGCTGC--------------------------------------CCATGCCTGGGTGCTCCTGGGGAGTCCTGCATTACAGGAAGCAGCTGCTGGATCTGCTGTGCAGTGGGGTTGTCGTGGGGAGA
s gorGor5.CYUI01015946v1       364179 108 +    378907 AAGAATGGCATGCAGGGGTTGCTGC--------------------------------------CCATGCCTGGGTGCTCCTGGGGAGTCCTGCATTACAGGAAGCAGCTGCTGGATCTGCTGTGCAGTGGGGTTGTCGTGGGGAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18862079 146 - 121039945 AAGAATGGCATGCAGCCTCTCCTGCTCCTCCTGCCGCCTCTCCTGTACCAACAGCTTCTCCAGCCAAGCCTGGGTGCTCCTGGGGAGTCCTGCATTACAGAAAGCAGCTGCTGGATCTGCTGTGCAGTGGGGTTGTCATGGGGAGA
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012116021v1       332393 108 +   4111199 AAGAATGGCATGCAGGGATTGCTGC--------------------------------------CCAAGCCTCGGTGCTCCTGGAGAGTCCTGCGTTAGAGGAAGCAGCTGCACGATACGCTGTGCAGTGGGGTTGTCGTGGGGAGA
i colAng1.NW_012116021v1    I 4105 C 0
s saiBol1.JH378235            5633831 107 -   6062622 AAAAAAGGAATGCAGGGGTTGCTGC--------------------------------------CCAAGCCTGGGCGCTCCCGGGG-GTTCTGCATCTCACGAAGCAGCTGCATTATCTGCTGTGCAGTGGGGTTGTCTCGAGGAGA
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       900120 8194 +   1024465 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e chlSab2.chr26               7725912 1556 +  58131712 I
e macFas5.chr7              106531935 3165 - 171882078 I
e rheMac8.chr7               62611543 3291 + 169600520 I
e panTro5.chrY               25715228   9 -  26350515 I

a score=89959.000000
s hg38.chr15_KI270850v1_alt    265712 78 +    430880 ACCCTCCCTGTCCTCTCCTGGTGCAGCCTCCACGCTATCAGTGAGGCTCACCTCACAAAGATCTTCAGAGAGAGGGAG
s panTro5.chrY               25715237 78 -  26350515 ACCCTCCCTGTCCTCTCCTGGTGCAGCCTCCATGCTATCAGTGAGGCTCACCTCACAAAGATCTTCAGAGAGAGGGAG
i panTro5.chrY              I 9 C 0
s gorGor5.CYUI01015946v1       364287 78 +    378907 ACCCTCCCTGTCCTCTCCTGGTGCAGCCTCCACGCTATCAGTGAGGCTCACCTCACAAAGATCTTCAGAGAGAGGGAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18862225 78 - 121039945 ACCCCCCCTGTCCTCTCCTGGTGCAGGCTCCACGCTATCAGTGAGGCTCACCTCATAAAGATCTTCAGAGAGAGGGAG
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012116021v1       332501 78 +   4111199 ACCCTCTCTGGCCTCTCCTGGTGCAGGCTCCACACTGTCAGTGAGGCTCACCTCACGAAGATCTTCAGACAGAGAAAG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5633938 75 -   6062622 ACCCTCTCCAGTCTCTCCTTGGGCAGGCTC---GCTGCCGGCGAGGCTCACCTCACAAAGATCTTTGGAGAGAGAGAG
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       900120 8194 +   1024465 I
e otoGar3.GL873530            8739860  0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e chlSab2.chr26               7725912 1556 +  58131712 I
e macFas5.chr7              106531935 3165 - 171882078 I
e rheMac8.chr7               62611543 3291 + 169600520 I

a score=113305.000000
s hg38.chr15_KI270850v1_alt    265790 81 +    430880 GGGGGGTGGGAATCTGAGCACAGTGTGAG-CCTCCCCTGCTCCTGCCTGCCCACCCCGCCTGAGGGCTC-TACTCACCACCCT
s panTro5.chrY               25715315 80 -  26350515 GGGAG-TGGGAATCTGAGCACAGTGCGAG-CCTCCCCGGTTCCTGCCTGCCTACCCCGCCTGAGGGCTC-TACTCACCACCCT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       364365 81 +    378907 GGGGGGTGGGAATCTGAGCACAGTGCGAG-CCTCCCCTGCTCCTGCCTGCCCACCCCGCCTGAGGGCTC-TACTCACCACCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18862303 80 - 121039945 GGGGG-TGGGAATCTGAGCACAGTGGGAG-CCTCCCCTGCTCCTGACTGCCCACCCCACCTGAGGGCTC-AACCCACCACCCT
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012116021v1       332579 76 +   4111199 GAGGG-----GATCTGAGCTCAGTGCGAG-CCGCCCCTGCTCCTGCCTGCCCACCCCGCCTGAGCGCTC-TACTCACCACCCT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5634013 78 -   6062622 -----GCAGGGCTCTGAGCGCCACGTGAGCCCTCCCTTGCTCCTGCCTGCCCACACCTCCCGAGGGTTCTTACTCACCACCCT
i saiBol1.JH378235          C 0 C 0
s cebCap1.NW_016107979v1       908314 81 +   1024465 GGGAGGTGGGGATCTGAGTACAATGCCAG-CCTCCCCTGCTCCTGAATGCCCACCCCGCCTGAGGGCTC-TACTCACCATCCT
i cebCap1.NW_016107979v1    I 8194 I 97
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873530            8739860  0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e chlSab2.chr26               7725912 1556 +  58131712 I
e macFas5.chr7              106531935 3165 - 171882078 I
e rheMac8.chr7               62611543 3291 + 169600520 I

a score=49322.000000
s hg38.chr15_KI270850v1_alt    265871 48 +    430880 GCTCGTCAGC-ACACCCAAGCTCCTGGGCTATTGGGGCTCCTAGAGTGG
s panTro5.chrY               25715395 48 -  26350515 GCTTGTCAGC-ACACCCAAGCTCCTGGGCGATTGGGGCTCCTAGATCGG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       364446 48 +    378907 GCTTGTCAGC-ACACCCAAGCTCCTGGGCGATTGGGGCTCCTAGAGCAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18862383 49 - 121039945 GCTTGTCAGCAACACCCCAGCTCCTGTGGGATTGGGGCTCCTAGAGCAG
i nomLeu3.chr6              C 0 I 45709
s colAng1.NW_012116021v1       332655 48 +   4111199 GCTTGTCAGC-ACACCCAAGCTCCTGGGGGATGGGGGCTCCTAGAGCAG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5634091 48 -   6062622 GCTGGTTGGC-AGCCCCAAGCTCCTGGGGGGCTGGGGTCCCTGGATTGG
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       908395 97 +   1024465 I
e otoGar3.GL873530            8739860  0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e chlSab2.chr26               7725912 1556 +  58131712 I
e macFas5.chr7              106531935 3165 - 171882078 I
e rheMac8.chr7               62611543 3291 + 169600520 I

a score=53707.000000
s hg38.chr15_KI270850v1_alt    265919 77 +    430880 GCTCATCAGCAGGGTTCTGGGCAATGGTCA-GAATTTGCCATGCCCCTCCTTGTGGTCTCCCACAAGCTGCAACACCT
s panTro5.chrY               25715443 77 -  26350515 GCTTATCAGCAATGTTCTGGACAATGGTCA-GAATTTGCCATGCCGCTCGTTGTGGTCGCCCACAAGCTGCAACACCT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       364494 77 +    378907 GCTCATCAGCAATGTTCTGGGCAATGGTCA-GAATTTGCCATGCCCCTCCTTGTGGTCGCCCACAAGCTGCAACACCT
i gorGor5.CYUI01015946v1    C 0 C 0
s colAng1.NW_012116021v1       332703 78 +   4111199 GCTCATCAGCAGGACTCTGGGCAGTGGTCAGGAATTTGTCGTGCCCCTCGTTGTGGTCGCTCACAAGCTGCAACACCT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5634139 78 -   6062622 GCTCATCTGCAGGGTTCTGGGCAACTGCTAGGAATCTGCTATGCCACTCATTGCGGTCATTCACAAGCCGTAACACCA
i saiBol1.JH378235          C 0 I 1
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       908395 97 +   1024465 I
e otoGar3.GL873530            8739860  0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e chlSab2.chr26               7725912 1556 +  58131712 I
e macFas5.chr7              106531935 3165 - 171882078 I
e rheMac8.chr7               62611543 3291 + 169600520 I
e nomLeu3.chr6               18862432 45709 - 121039945 I

a score=113217.000000
s hg38.chr15_KI270850v1_alt    265996 130 +    430880 GCCCC-GCAGCTCCTGCAGGTTCACCTGGAGGAAGGGGTG-TTAGCTGCCATGCCGGTGCCAGCACGCACGTTCACACCCACCCCCACCCTC-----CCCCACCGAGATGTTGCACACCCTACCTTCATCTCCTCCT
s panTro5.chrY               25715520 121 -  26350515 GCCCCTGCAGCTCCAGCAGGTTCACCTGGAGGAAGGGGTG-TTAGCTGCCATGCCGGTGCCAGCACCCACATTCACTCCCACCCCCACA---------------GAGATGTTGCACACCCTACCTTCATCTCCTCCT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       364571 126 +    378907 GCCCC-GCAGCTCCAGCAGGTTCACCTGGAGGAAGGGGTG-TTAGCTGCCATGCCGGTGCCGGCACCCACGTTCACCCCCACCCCCACC---------CCCACAGAGATGTTGCACACCCTACCTTCATCTCCTCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s colAng1.NW_012116021v1       332781 128 +   4111199 GCCCCTGCAGCTCCAGCAGGTTCACCTGGAGGGAGGGGTGCTTAGCAGCCATGCCAGTGCCAGTGCCCAAGTTCACCCTCACCCCCACC---------CCCGCAGACATGTTGCACACCGTACCTTCATCTCCTCCT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5634218 108 -   6062622 -CTCCTGCAGCTCCAGCAGCTTCACCTGGAGGGAGGGGTGTTCAGCTGCCACATCCGTGCCTGTGCCCA----------------------------CCCCACAGATATGTTCCATGCCGTACCTTCATCTCCTCCT
i saiBol1.JH378235          I 1 C 0
s cebCap1.NW_016107979v1       908492 136 +   1024465 -GCCCTGCAGCTCCAGCAGCTTCACCTTGAGATAGGGGTGCTCAGCTACAATGCCGGTGCCGGCAcccacgctcacgcccacccccatccccctcacccCAGCAGAGATGTTGTACACCTTACCTTCATCCCCTCCT
i cebCap1.NW_016107979v1    I 97 I 208
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e chlSab2.chr26               7725912 1556 +  58131712 I
e macFas5.chr7              106531935 3165 - 171882078 I
e rheMac8.chr7               62611543 3291 + 169600520 I
e nomLeu3.chr6               18862432 45709 - 121039945 I

a score=116163.000000
s hg38.chr15_KI270850v1_alt    266126 179 +    430880 GGTCCTGGGCCAGCCTGACGATGTCCTCCTC----TCCCAGTGCTGCGTCTCTGACACTGCCCCCTGGCT------------GATGTACTTTCCTGCAGGAGGACATGGCTCAGATGCTGGGGCCCCTCAGACGGCCTGGCAG---CTCCCCCCAGCGGTGCCCTAGCCTCTCACTCCCT-ATGGTGTCTGTCTGTCCT
s panTro5.chrY               25715641 179 -  26350515 GGTCCTGGGCCAGCCTGACGATGTCCTCCTC----TCCCAGTGCTGCGTCTTTGGCACTGCCCCCTGGCT------------GATGTACTTTCCTGCAGGAGGACACGGCTCAGATGCTGGGGCCCCTCGGATGGCCCTGCAG---CTCCCCCT-GCCATGCCCTGGCCTCTCGTTTACTCATGGTGTCTGTCTGTCCT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       364697 170 +    378907 GGTCCTGGGCCAGCCTGACGATGTCCTCCTC----TCCCAGTGCTGCGTCTCTGACACTGCCTCCTGGCT------------GAAGTACTTTCCTG--------CATGGCTCAGATGCTGGGGCCCCTTGGACGGCCTGGCAG---CTCCCCCA-GCGGTGCCCTAGCCTCTCGCTCACT-ATGGTGTCTGTCTGTCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s colAng1.NW_012116021v1       332909 190 +   4111199 GGTCCTGGGCCAGCCTGATGATGTCCTCCTC----TCCCAGTGCCGCATCTTTGGCACTGCCCCCTGGCTCCCATCTGGGGCGATGTACTTTCCTGCGGGAGGACA-GGCTCAGATGCTGGGGCCTCTCTGACAGCTCTGCAG---CTCCCCCT-GCAGTGCCCTGGCCTCCCGCTCACTCATGGTGTCTGTCTTTCCT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5634326 198 -   6062622 TGTCCTGGGCCAGCCTGCTGATGTACTCCTCCTTTTCCCGGTGCCGCTCCTTCAGCACTGCCCTCTGGCTCTGGTACAGTGCGATGTACTCTCCTGCAGGAGAACAGGGCTCAGATGCTGGGTTCCCTCCGATGGCTGTACAGCACCTCCTCCT-GCTGTGTCGTGCCCTCCCACTCACCAATGGTGTCTGTCTCTCCA
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       908628 208 +   1024465 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e chlSab2.chr26               7725912 1556 +  58131712 I
e macFas5.chr7              106531935 3165 - 171882078 I
e rheMac8.chr7               62611543 3291 + 169600520 I
e nomLeu3.chr6               18862432 45709 - 121039945 I

a score=15738.000000
s hg38.chr15_KI270850v1_alt    266305 17 +    430880 GAGAGGTGGATGAATTG
s panTro5.chrY               25715820 17 -  26350515 GAGAGGTGGACGAATTG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       364867 17 +    378907 GAGAGGTGGACGAATCG
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26               7727468 17 +  58131712 GAGAGATGGATGAATCC
i chlSab2.chr26             I 1556 C 0
s colAng1.NW_012116021v1       333099 17 +   4111199 GAGAGGTGGATGAATCC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5634524 17 -   6062622 GACAGCTGGATGCAACG
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       908628 208 +   1024465 I
e otoGar3.GL873530            8739860  0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e macFas5.chr7              106531935 3165 - 171882078 I
e rheMac8.chr7               62611543 3291 + 169600520 I
e nomLeu3.chr6               18862432 45709 - 121039945 I

a score=5952.000000
s hg38.chr15_KI270850v1_alt    266322 4 +    430880 AAGC
s panTro5.chrY               25715837 4 -  26350515 AAGC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       364884 4 +    378907 AAGC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106535100 4 - 171882078 AAGC
i macFas5.chr7              I 3165 C 0
s chlSab2.chr26               7727485 4 +  58131712 AAGC
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1       333116 4 +   4111199 AAGC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5634541 4 -   6062622 ATGT
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       908628 208 +   1024465 I
e otoGar3.GL873530            8739860 0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e rheMac8.chr7               62611543 3291 + 169600520 I
e nomLeu3.chr6               18862432 45709 - 121039945 I

a score=154430.000000
s hg38.chr15_KI270850v1_alt    266326 80 +    430880 TCTAGTTTCTCTACCCGCTCCTTCAGGTCCACCTTCTCCTTC--------CATAAAGTCGCTGTGGAGCCAAAATAATGGGGTCACAT
s panTro5.chrY               25715841 80 -  26350515 TCTAGTTTCTCCACCGGCTCCTTCAGGTCCACCTTCTCCTTC--------CATAAAGTTGCTGTGGAGCCAAAATAATGGGGTCATAT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       364888 80 +    378907 TCTAGTTTCTCTACCCGCTCCTTCAGGTCCACCTTCTCCTTC--------CATAAAGTCACTGTGGAGCCAACATAATGGGGTCACAT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106535104 79 - 171882078 TCTAGTTTCTCCACATGCTCCTTCATGTCCACCTTCTCCTCC---------ATAAAGTCGCCCTGAAGCCAAAATAATGTGGTCACAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7727489 88 +  58131712 TCTAGTTTCTCCACCTGCTGCTTCCCGTCCACCTTCTCCCTCGGGAGGGCGATAAAGCCACTCTGGAACCAAAATAATAGGGTCACAT
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1       333120 88 +   4111199 TCTAGTTTCTCCACCCACTCCTTCAGGTCCACCTTCTCCTTCAGGAGCTCCATAAAGCCGCTCTGGAGCCAAAACAATGGGGTCACAT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5634545 88 -   6062622 TCCAGTTCCTCTACCCTCTCCTTCAGGTCCGCCTTCTCCTGCATGAGCTCCATAAATCGGCTCTGGAGCCAAAATAATGGGGTCAGAT
i saiBol1.JH378235          C 0 C 0
s cebCap1.NW_016107979v1       908836 88 +   1024465 TCTAGTTTTTCCACCCGCTCCTTCAGGTCCGCATTTTCCTTCACGAGGGCCATGAAGTCATTCTGGAGCCGAAATAATGGGGTCACAT
i cebCap1.NW_016107979v1    I 208 I 32
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873530            8739860  0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e rheMac8.chr7               62611543 3291 + 169600520 I
e nomLeu3.chr6               18862432 45709 - 121039945 I

a score=21561.000000
s hg38.chr15_KI270850v1_alt    266406 43 +    430880 GTCAGGAGTCACCTGCCTTGTCCTGCCCCCCC------GCCCCCCTTGT
s panTro5.chrY               25715921 38 -  26350515 GTCAGGAGTCACCTGCCTTGTCCCGACCCCAC-----------CCTTGT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       364968 49 +    378907 GTCAGGAATCACCTGCCTTGTCCTGCCACCCCCCCTCCGCCCCGCTTGT
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106535183 36 - 171882078 CTCAGGAACCACCTGCCTTGCCCCACCCACAC-----------CGTT--
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7727577 38 +  58131712 CATGGGAGTGACCTGTCCTGCCCCACCCCCAC-----------TTTTCT
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1       333208 34 +   4111199 CTCAGAAGCCACTT----TGCCCCGCCCCCAC-----------CCTTCT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5634633 30 -   6062622 CTCGGCAGCGACC-----TGCCCCACCCCCGC-----------CCT---
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       908924 32 +   1024465 I
e otoGar3.GL873530            8739860  0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e rheMac8.chr7               62611543 3291 + 169600520 I
e nomLeu3.chr6               18862432 45709 - 121039945 I

a score=55209.000000
s hg38.chr15_KI270850v1_alt    266449 36 +    430880 TGGCCCATGCCAG----GACCTACTCACCTGCAGCTTCTC
s panTro5.chrY               25715959 35 -  26350515 TGGCCCATGCCAG----GAC-TACTCACCTGCAGCTTCTC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       365017 36 +    378907 TGGCCCATGCCAG----GACCTACTCACCTGCAGCTTCTC
i gorGor5.CYUI01015946v1    C 0 C 0
s chlSab2.chr26               7727615 36 +  58131712 TGGCCCATGCCAG----GACTCACTCACCTTCACCTTCTC
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1       333242 36 +   4111199 TGGCCCATGCCAG----GATCTACTCACCTGCAGCTTCTC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5634663 40 -   6062622 TGGCCCATGCTAGGAGAGACTCATTCACCTGCAGCTTCTC
i saiBol1.JH378235          C 0 C 0
s cebCap1.NW_016107979v1       908956 36 +   1024465 TGGCCCCTGCCAG----GACTCACTCACCTGCAGCTTGGC
i cebCap1.NW_016107979v1    I 32 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873530            8739860  0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e macFas5.chr7              106535219  0 - 171882078 C
e rheMac8.chr7               62611543 3291 + 169600520 I
e nomLeu3.chr6               18862432 45709 - 121039945 I

a score=95056.000000
s hg38.chr15_KI270850v1_alt    266485 34 +    430880 CATGGCCCCCTGCAGGGCCCGGTGGGTCTCCCCA
s panTro5.chrY               25715994 34 -  26350515 CATGGCCTCCTGCAGGGCCCAGTGGGTGTCCCCA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       365053 34 +    378907 CATGGCCCCCTGCAGGGCCCGGTGGGTCTCCCCA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62614834 34 + 169600520 CATGGCCCCCTGCAGGGCTCGGTGGGTCTCCCCA
i rheMac8.chr7              I 3291 C 0
s macFas5.chr7              106535219 34 - 171882078 CATGGCCCCCTGCAGGGCTCGGTGGGTCTCCCCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7727651 34 +  58131712 CATGGCCTCCTACAGGGCCCGGTAGCTCTCCCCA
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1       333278 33 +   4111199 CATGGCCCACTGCAGGGCT-GGTGGGTCTCCCCA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5634703 34 -   6062622 CATGGCCTTCTGTAGGGCCCGGTGGGTCTCCCCA
i saiBol1.JH378235          C 0 C 0
s cebCap1.NW_016107979v1       908992 34 +   1024465 GATGGCACCCTGCAGGGCCCGCTGGGTCTCCCCA
i cebCap1.NW_016107979v1    C 0 I 132
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873530            8739860  0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e nomLeu3.chr6               18862432 45709 - 121039945 I

a score=155231.000000
s hg38.chr15_KI270850v1_alt    266519 102 +    430880 AACACAGACTCACCCCCACTCTCTGGGGCTGGGGCCGCTACCTCTGGCTTTTTCTGGGACGAGGCCACTGGGTGAGCCAGGGGCTGGCAGCACACCCTT------------------------------TGT
s panTro5.chrY               25716028 102 -  26350515 CACACTGATTCACCCCCAGTCTCTGGGGCTGGGGCCGCTGCCTCTGGCTTTTTCTGGGACGAGGCCACTGGGTGAGCCAGGGGCTGGCAGCACACGCTT------------------------------TGC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       365087 102 +    378907 AACACAGACTCACCCCCACTCTCTGGGGCTGGGGCCGCTGCCTCTGGCTTTTTCTGGGACGAGGCCACTGGGTGAACCAGGGGCTGGCAGCACACCCTT------------------------------TGT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62614868  81 + 169600520 CACACAGACTCACCCCCAGTCCCTGGGG---------------------TCCTCTGGGATGCAGCCACCGGGTGAGCCAGGGGCTGGCAGCACACCCTT------------------------------TGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106535253  81 - 171882078 CACACAGACTCACCCCCAGTCCCTGAGG---------------------TCCTCTGGGATGAAGCCACCGGTTGAGCCAGGGGCTGGCAGCACACCCTT------------------------------TGG
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7727685 132 +  58131712 CACACAAACTCACCCCCAGTCCCTGGGGCCGGGGCCTCTGCCTCTGGCTCCTTCCAGGCCGAGGCCACCAGGTGAGCCAGGTGCAGGCAGCACAGCCTTCACACCTTCCGCTGCCCACATAGCTGTGCCTGC
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1       333311  81 +   4111199 CACACAGACTCACCCCCAGTCCCTGGGG---------------------TCCTCTGGGATGAAGCCACTGGGTGAGCCAGGGGCTGGCAGCACATCCTT------------------------------TGC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5634737  99 -   6062622 CACACAGAATCACCCCCAGTCCCTGGGGGTGGGGCTGCCGCCTCAG---GCTCCTGGGCAGAGGCCAGCAAGTAAGCCAGGCGCCGGCAGCGCACCCTT------------------------------TGC
i saiBol1.JH378235          C 0 I 30
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       909026 132 +   1024465 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e nomLeu3.chr6               18862432 45709 - 121039945 I

a score=372306.000000
s hg38.chr15_KI270850v1_alt    266621 154 +    430880 TCCTCCTGGGCATTGGCTCCAGCGGAGTTGAAAAATGCCACCTGAAGACAAGAGGTGAGTATTCTTGTAGGGGTATACACATAACAACTGG----GGCAGGCAGATGGAGCATAGCCCCTTCATTTCGGGCCTCACAGAGTGCACCTGTTGGTCACAG
s panTro5.chrY               25716130 154 -  26350515 TCCTCCTGGGCACTGGCTCCAGCGGAGTTGAAAAATGCCACCTGAAGACAAGAGGTGAGTATTTTTGTAGGGGTATACACATAACAACCAG----GGCAGGGAGATGGAGCACAGCCCCTTCCTTTCGGGCCTCACAGAGTGCACCTGTTGGTCACAG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       365189 158 +    378907 TCTTCCTGGGCACTGGCTCCAGCGGAGTTGAAAAATGCCACCTGAAGACAAGAGGTGAGTATTCTTGTAGGGGCATATACAGAACAACAGGGGCAGGCAGGGAGGTGGAGCACAGCCCCTTCCTTTCAGGCCTCACAGAGTGCACCTGTTGGTCACAG
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62614949 153 + 169600520 TATTCCTGGGCATTGGCTCCAGCGTCGTTCAAAAATGCCACCTGAAGGCAAGAGGTGACTATTCTTGTAGGGACATACACAGAACCACCAG----GGCAAGGAGGTGGAGTGCAGCCCCTTCCCTTGGGG-CTCAGAGTGTGCACCTGTTGGTCACAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106535334 152 - 171882078 TATTCCTGGGCATTGGCTCCAGCGTCGTTCAAAAATGCCACCTGAAGGCAAGAGGTGACTATTCTTGTAGGGACATACACAGAACAACCGG----GGCAGGGAGATGGAGCGCAGCCACTTCCCTTGGGG-CTCAGAGTGAGCACCTGTTGGTCACA-
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7727817 154 +  58131712 TCCTCCTGGAAACTGGCTCCAGCGGAGTTGAAAAATGCCACTTGAAGGCAAGAGCTGAGTATTCTTGTAGGGGCATACACAGAACAAATGG----GGCTGGGAGGTGGAGCACAGTCCCTTCCCTTGGGGCCTCAGAGAGTGCACCTGTGGGTCACAG
i chlSab2.chr26             C 0 C 0
s colAng1.NW_012116021v1       333392 153 +   4111199 TCCTACTGGGCACTGGCTCCAGCGAAGTTGAAAAATGCCACCTGAAGGCAAGAGGTGAGTATTCTTGTAGGGACATACACAGAACAACCGG----GGCAGGGAGGTGGAGCGCAGCCCCTTCCCTTGGGG-CTCAGAGTGTGCACCTGTTGGTCACAG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5634866 153 -   6062622 TCCTCCTCGGCACTGGCTACAGCCGAGTTGAAAAATGCCACCTGCAGGCAAGAGAGGTGCATTCTTGGATGGGGATACACAGGATGAACAA----GGCAGGGAAGTGGACAGCAGCC-CTTCCCTGGGGGCCTCAGAGGCTGCACCTGTTGGTCACAG
i saiBol1.JH378235          I 30 C 0
s cebCap1.NW_016107979v1       909158 152 +   1024465 TCCTCCTGGGCACCGGCTCCAGCAGCTTTCAGAAATGGCACCTGAAGGCAAGAGGGGAGCATTCTTGTAGGGGTATACACAGGACAGACGG----GGCGGGGAGGGGGAGCGCAGCCTCTGCCCTTGGGGCCTCACAGAGTGCACCTGTCAGTCAC--
i cebCap1.NW_016107979v1    I 132 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1      1116370 3583 +   1458659 I
e nomLeu3.chr6               18862432 45709 - 121039945 I

a score=388583.000000
s hg38.chr15_KI270850v1_alt    266775 113 +    430880 GTGAAATGGTGTCTGACCACTGGCTCCC--AGAAGCAGAGAAAGTCCACAGAAGTCAGAAGGCGGGGAAACCAAGAACATAAGGGGGTTTCGGAGGGACCACAGAGGAAGGTGGC
s panTro5.chrY               25716284 113 -  26350515 GTGAAATGGTGTCTGACCACTGGCTCCC--AGAAGGAGAGAAAGTCCACAGAAGTCAGAAGGCAGGGAAACCAAGAACATAAGGGGGTTTTGGAGGGACTACAGAGGAAGGTGGC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       365347 113 +    378907 GTGAAATGGTGTCTGACCACTGGCTCCC--AGAAGGAGTGAAAGTCCACAGAAATCAGAAGGCGGGGAAACCAAGAACATAAGGGGGTTTCGGAGGGACCACAGAGGAAGGTGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62615102 113 + 169600520 GTGAAATGGTGTTTGACCACTGGCTCCC--AGAAGGAGTGAAAGTCCACAGAAATCAGAAGGCAGGGAAACCAAGAACATAAGGGGATCTGGGAGGGACCACCGGGGAAGGTGAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106535486 113 - 171882078 GTGAAATGGTGTTTGACCACTGGCTCCC--AGAAGGAGTGAAAGTCCACAGAAATCAGAAGGCAGGGAAACCAAGAACATAAGGGGATCTGGGAGGGACCACCAAGGAAGGTGAC
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7727971 113 +  58131712 GTGAAGTGGTGTCTGACCACTGGCTCCC--GGAAGGGGTGAAGGTCCAGAGAAATCAGAAGGCGGGGAAAGCAAGAGCATAACGGGGTCTTGGAGGGACCACAGAGGAAGGTGGC
i chlSab2.chr26             C 0 C 0
s manLeu1.NW_012105520v1      1119953 113 +   1458659 GTGAAATGGTGTTTGACCACTGGCTCCC--GGAAGGAGTGAAAGTCCACAGAAATCAGAAGGCAGGGAAACCAAGAACATAAGGGGATCTGGGAGGGACCAGCGAGGAAGGTGAC
i manLeu1.NW_012105520v1    I 3583 C 0
s colAng1.NW_012116021v1       333545 113 +   4111199 GTGAAATGGTGTCTGACCACTGGCTCCC--GGAAGGAGTGAAAGTCCACAGAAATCAGAAGGCAGGGAAACCAAGAGCATAAGGGGATCTGGGAGGGACCACCGAGGAAGGTGAC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5635019 112 -   6062622 GGGAAATGGTGTCTGATCACTGGCTCCCAGGGAAGGGGTGTGGGTCCAGAGAACTCAGAAGGCCAGGAAACCAAGAG---AAGAGGGTCTGGGAGGGACCACAAAGGGAGGCAGC
i saiBol1.JH378235          C 0 C 0
s cebCap1.NW_016107979v1       909310 109 +   1024465 ----GATGGTGTCTGAACACCGGCTCCC--GGAAGGGGTGAGGGTCCAGAGGAATCAGAAGGCAGAGAAACCAAGAGCATAAGGAGGTCTCGGAGGGACCACAGAGGAAGGTGGC
i cebCap1.NW_016107979v1    C 0 N 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18862432 45709 - 121039945 I

a score=1140083.000000
s hg38.chr15_KI270850v1_alt    266888 437 +    430880 AAAGTAGGGGCAGGGAAAGTCAGGCTCACCATGGCCTCCCGGCTCTCCAGGTCCCCTGGGATGTTCGGCATGGGCCGAAGCGC---CTCCTGCTCACTGTCCAGATGTCCTCCTCCATCTCCTGTGGGG-GGTGGCCAGAGGGGTCCTCAGACAACCCAACAAGGGAGGTACAGTGGGCCCGCCTCTGCCCCCACACTCACTGTGTAACCTTGAGCCAGCCCCTCCCCAGAGGGGAATG---AGCTGttctttattt--tga---------attttaagaaccaagatcttgctatattgcccaggcacagtcccactaccgattggtgcaggaattctgacctgctccctttctgacctgggccagttctcccatccttaggcaagccgat-gacct--gttcccaggaggtcaccatactgatactgaacttagtgcggacaccttgtcggcataA
s panTro5.chrY               25716397 431 -  26350515 AAAGTAGGGGCAGGGAAAGTCAGGCTCACCATGGCCTCCCGGCTCTCCGGGTCCCCTGGGATGTTCAGCATGGGCCGAGGTGC---CTGCTCCTCATTGTCCAGATGTCCTCCTCCATATCCTGTGGGG-GGTGGCCAGAGGGGTCCTCAGACAACCCAACAAGGGAGGTACAGTGGGCCCATCTCTGCCCCCACACTCACTGTGTAACCTTGCGCCAGCCCCTCCCCAGA-GGGAATG---CGCTGTTCTTTAT-----------------TTTTAAGAACCAAAATCTTGCTATATTGCCcaggcacagtcccactaccgactggtgcaggaattctgacctgctccctttctgacctgggccagttctcccatccttaggcaacccgatagcccc--gttcccaggaggtcaccatactgataccgaacttagtacggacacccggttggcataA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       365460 437 +    378907 AAAGTAGGGGCAGGGAAAGTCAGGCTCACCATGGCCTCCCGGCTCTCCAGGTCCCCTGGGATGTTCGGCATGGGCCGAGGCGC---CTCCTGCTCACTGTCCAGATGTCCTCCTCCATCTCCTGTGGGG-GGTGGCCAGAGGGGTCCTCAGACAACCCAACAAGGGAGGTACAGTGGGCC---CTCTGCCCCCACACTCACCGTGTAACCTTGAGCCAGCCCCTCCCCAGAGGGGAATG---AGCTGTTCTTTATTT--TGA---------ATTTTAAGAACCAAGATCTTGCTATATTGCCcaggcacagtcccactaccgattggtgcaggaattctgacctgctccccttctgacctgggccagttctcccatccttaagcaacccgatggccccctgttcccaggaggtcaccatactgataccgaacttagtgcggacaccttgtcggcataA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62615215 442 + 169600520 AAAGTAGGGGCAGGGAAAGTCAGGCTTACC-TGACCTCCCAGCTCTCCCGGTTCTCTGGGATGTTCTGCATGGGCTGAGGTGCCTCCTCCTCCTCACTGTCCAGATGTCCTCCTCCATCTCTTCTAGGG-AGTGGCCAGAAGGGTCCTCAGACAACCCAACAAGGGAAGTACTGGGGGTCCACCTCTGCCCCCACCCTCAGTGTGTAGCCCTGAGCCAGCCCATTCCCAGAGGGGAATG---AGCTGTTCTGTATTA--TTA---------CTTTTAAGAACCAAGATCTTGCTATACTGCCcaggcacagtcccactaccgattggtgcgggagtcctgacctgctccctttctgacctgggccagttctcccatccttaggcaacctgatggcctcctgctcccaggaggtcaccatattgataccgaacttagcgtggacacccggtcggcataA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106535599 442 - 171882078 AAAGTAGGGGCAGGGAAAGTCAGGCTCACC-TGACCTCCCGGCTCTCCCGGTTCTCTGGGATGTTCTGCATGGGCTGAGGTGCCTCCTCCTCCTCACTGCCCAGATGTCCTCCTCCATCTCTTCTAGGG-AGTGGCCAGAAGGGTCCTCAGACAACCCAACAAGGGAAGTACTGGGGGTCCACCTCTGCCCCCACCCTCACTGTGTAGCCCTGAGCCAGCCCATTCCCAGAGGGGAATG---AGCTATTCTGTATTA--TTA---------CTTTTAAGAACCAAGATCTTGCTATACTGCCcaggcacagtcccactaccgattggtgcgggagacctgacctgctccctttctgacctgggccagttctcccatccttaggcaacctgatggcctcctgctcccaggaggtcaccatattgataccgaacttagcgcggacacccggtcggcataA
i macFas5.chr7              C 0 C 0
s chlSab2.chr26               7728084 445 +  58131712 AAAGCGGGCACAGGGAAAGTCAGACTCACCATGGCCTCCTGGCTCTCCAGGTCCCCTGGGACACTAGGCATAGGCCGAGGCACCTTCTCCTCCTCAGTGTCCAGATGTCCTCCTCCATCTCCTGTGGGGAGGTGGCCAGAGGGGTCCTCAGAAAACCCAACAAGGGAAGTACCGTGGGCCCACCTCTGTCCCCACCCTCACTGTGTAACCCTGAGCCAGCCCCTCCCCAGAGGGGAATG---ACCTGCTGTTCTTTAGTTTT---------CCTATAAGATCCAAGATCTT-CTATATTGCCcaggcacagtcacactaccagttggtgcaggagttctgacctgctccctttctgatctgggccagttcactcatccttaggcaacctggtggccgcctgctcctgggaggtcatcatattgatgccgaacttagtacagacacccggttggcataa
i chlSab2.chr26             C 0 n 0
s manLeu1.NW_012105520v1      1120066 439 +   1458659 AAAGTAGGGGCAGGGAAAGTGAGGCTCACC-TGACCTTCCGGCTCTCCCGGTCCTCTGGGATGTCCTGCATGGGCCGAGGTGCCTCCTCCTCCTCACTGTCCAGATGTCCTCCTCCATCTCCTCTAGGG-GGTGACCAGAGGGGTCCTCAGACAACCCAACAAGGGAAGT---GGGGGCCCACCTCTGCCCCCACCCTCACTGTGTAGCCCTGAGCCAGCCTATTCCCAGAGGGGAATG---AGCTGTTCTGTCTTA--TTA---------CTTTTAAGAACCAAGATCTTGCTATACTGCCcaggcacagtcccactactgattggtgcaggagtcctgacctggtccctttctgacctgggccagttctcccgtctttaggcaacctgatggcctcctgctcccaggaggtcaccatattgataccgaacttagcgcagacacccggtcggcataA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       333658 438 +   4111199 AAAGTAGGGGCAGGGAAAGTCAGGCTCACC-TGGCCTCCAGGCTCTCCAGGTCCCCTGGGATGTTCGGCATGGGCCGAGGCGCCTCCTCCTCCTCACTGTCCAGATGTCCTCCTCCATCTCCTCTAGGG-GGTGGCCAGAGGGGTCCTCAGACAACCCAACAAGGGAAGTATTGGGGGCCCACCTCTGCCCCCACCCTCA-TGTGTAACCCTGAATCAGCCCATTCCCAGAGGAGAATG---AGCTGTTCTGTATTT--TTA---------CTTTTAAGAACCAAGATCTTGCTATATTGCCcaggaacagtcccactaccgattggtgcgggagtcctgacctggtccctttctgacctgggccagttct---gtcctcaggcaacctgatggcctcctgctcccaggaggccaccatattgataccaaacttagcgtggacacctggtcggcataA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5635131 451 -   6062622 AAAGGTGGGGCAGGAGTCGTCAGCCTCACCATGGCCTCCCGGCTCTCCAGGTCCTCTGGGATGCTCGGCATGGGCCAAGGCGCCTCCTCCTCCTCGTCGTCCTCCCTGTCCAGTCCATCTCCTATTGCG-GGTGGCCAGAGGGGTCATCAGACAACCCAACAAGG---GTACAGTGGGCTCAACTCTGCCCCCACCCTCACTGTGTAACCCTGAGCCAGCCCCTCCCCAGA-GGGAATGAGCAGCTGTCCTTAAttt--ttattttattccttttgaagagccacggtctcgctatgttgcccaggtgcagccccactacccatcagcacaggagttctaacctgtgccatttctgacctgggccagtccacccatccttaggcaacctggtagtcccctgctcccaggaagtcactatattgatgcccaacttagtgtggacagccggtgagcataA
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               18862432 45709 - 121039945 I

a score=7896.000000
s hg38.chr15_KI270850v1_alt    267325 3 +    430880 TGA
s panTro5.chrY               25716828 3 -  26350515 TGA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       365897 3 +    378907 TGA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62615657 3 + 169600520 TGA
i rheMac8.chr7              C 0 I 65691
s macFas5.chr7              106536041 3 - 171882078 TGA
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1      1120505 3 +   1458659 TGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1       334096 3 +   4111199 TGA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378235            5635582 3 -   6062622 TGA
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873530            8739860 0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7728529 0 +  58131712 I
e nomLeu3.chr6               18862432 45709 - 121039945 I

a score=4200.000000
s hg38.chr15_KI270850v1_alt    267328 2 +    430880 CC
s panTro5.chrY               25716831 2 -  26350515 CC
i panTro5.chrY              C 0 I 18788
s gorGor5.CYUI01015946v1       365900 2 +    378907 CC
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106536044 2 - 171882078 CC
i macFas5.chr7              C 0 I 1
s manLeu1.NW_012105520v1      1120508 2 +   1458659 CC
i manLeu1.NW_012105520v1    C 0 I 53197
s colAng1.NW_012116021v1       334099 2 +   4111199 CC
i colAng1.NW_012116021v1    C 0 n 0
s saiBol1.JH378235            5635585 2 -   6062622 CC
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873530            8739860 0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr26               7728529 0 +  58131712 I
e rheMac8.chr7               62615660 65691 + 169600520 I
e nomLeu3.chr6               18862432 45709 - 121039945 I

a score=-1119.000000
s hg38.chr15_KI270850v1_alt    267330 2 +    430880 -GA
s gorGor5.CYUI01015946v1       365902 2 +    378907 -GA
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7              106536047 1 - 171882078 -G-
i macFas5.chr7              I 1 I 86169
s saiBol1.JH378235            5635587 2 -   6062622 AG-
i saiBol1.JH378235          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873530            8739860 0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e manLeu1.NW_012105520v1      1120510 53197 +   1458659 I
e chlSab2.chr26               7728529 0 +  58131712 I
e rheMac8.chr7               62615660 65691 + 169600520 I
e nomLeu3.chr6               18862432 45709 - 121039945 I
e panTro5.chrY               25716833 18788 -  26350515 I

a score=19665.000000
s hg38.chr15_KI270850v1_alt    267332 19 +    430880 cacaaaatgcttaaaaggt
s gorGor5.CYUI01015946v1       365904 19 +    378907 cacaaaatgcttaaaaggt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18908141 19 - 121039945 cacaaaatgcttaaaaggt
i nomLeu3.chr6              I 45709 C 0
s rheMac8.chr7               62681351 19 + 169600520 cacaaaatgcttaaaaggt
i rheMac8.chr7              I 65691 C 0
s macFas5.chr7              106622217 19 - 171882078 cacaaaatgcttaaaaggt
i macFas5.chr7              I 86169 C 0
s saiBol1.JH378235            5635589 13 -   6062622 ------CTGTTCTAAAGGT
i saiBol1.JH378235          C 0 N 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873530            8739860  0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e manLeu1.NW_012105520v1      1120510 53197 +   1458659 I
e chlSab2.chr26               7728529  0 +  58131712 I
e panTro5.chrY               25716833 18788 -  26350515 I

a score=95097.000000
s hg38.chr15_KI270850v1_alt    267351 116 +    430880 aacctgactctttgttcagggctcagtcctttagatgttaatctgactgggccggtgcaccta---aataatatatatcct--------cctcagtctctctgattcctaaattatGCTGCTGTACG
s gorGor5.CYUI01015946v1       365923 116 +    378907 aacctgactctttgttcagggctcagtcctttagatgttactctgactgggccggtgaaccta---aataatatatatcct--------cctcagtctcgctgattcctaaattatGCTGCTGTACG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18908160 127 - 121039945 aacctgactctttgttcagggctcagtcctttagatgttaatttgactgggccggtgctcctaaataataatatatatcctcctcaacccctcagtctctctgattcctaaattatcccATTGCAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62681370 127 + 169600520 aacctgactctttgttcagggctcagtcctttagatgttaatctgactgggccagggcacctaaataataatatatatcctcctcaacccctcagtctctctgattcctaaattatcccACTGCAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106622236 127 - 171882078 aacctgactctttgttcagggctcagtcctttagatgttaatctgactgggccagggcacctaaataataatatatatcctcctcaacccctcagtctctctgattcctaaattatcccGCTGCAGG
i macFas5.chr7              C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873530            8739860   0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e manLeu1.NW_012105520v1      1120510 53197 +   1458659 I
e chlSab2.chr26               7728529   0 +  58131712 I
e panTro5.chrY               25716833 18788 -  26350515 I

a score=7425.000000
s hg38.chr15_KI270850v1_alt    267467 4 +    430880 GGGA
s gorGor5.CYUI01015946v1       366039 4 +    378907 GGGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18908287 4 - 121039945 GGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62681497 4 + 169600520 GGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106622363 4 - 171882078 GGGA
i macFas5.chr7              C 0 C 0
s saiBol1.JH378276            2786563 4 +   3282555 GGGA
i saiBol1.JH378276          N 0 C 0
s cebCap1.NW_016107979v1       743855 4 +   1024465 GGGA
i cebCap1.NW_016107979v1    N 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873530            8739860 0 -  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e manLeu1.NW_012105520v1      1120510 53197 +   1458659 I
e chlSab2.chr26               7728529 0 +  58131712 I
e panTro5.chrY               25716833 18788 -  26350515 I

a score=77113.000000
s hg38.chr15_KI270850v1_alt    267471 34 +    430880 GAGAGGCAGCAGGGTAGTGGAGTCATACCAAGCA
s gorGor5.CYUI01015946v1       366043 34 +    378907 GAGAGGCAGCAGGGTAGTGGAGTCATACCAAGCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18908291 34 - 121039945 GACAGGCAGCAGGGTAGTGGAGTCATACCAAGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62681501 34 + 169600520 GAGAGGCAGCAGGGTAGTGGAGTCATACCAAGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106622367 34 - 171882078 GAGAGGCAGCAGGGTAGTAGAGTCATACCAAGCA
i macFas5.chr7              C 0 C 0
s saiBol1.JH378276            2786567 34 +   3282555 GAGAGTCATCAGGGTAGTGGACTCATACCAAGCA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       743859 34 +   1024465 GAGAGGCATCAGGGTAGTGGACTCATACCAAGCA
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530           29588751 34 +  36342412 GAGAGGCAGTGGTGTGGTGGAGTCATACCAAACA
i otoGar3.GL873530          n 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e manLeu1.NW_012105520v1      1120510 53197 +   1458659 I
e chlSab2.chr26               7728529  0 +  58131712 I
e panTro5.chrY               25716833 18788 -  26350515 I

a score=4011.000000
s hg38.chr15_KI270850v1_alt    267505 2 +    430880 AC
s gorGor5.CYUI01015946v1       366077 2 +    378907 AC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18908325 2 - 121039945 AC
i nomLeu3.chr6              C 0 I 4
s rheMac8.chr7               62681535 2 + 169600520 AC
i rheMac8.chr7              C 0 I 4
s macFas5.chr7              106622401 2 - 171882078 AC
i macFas5.chr7              C 0 I 4
s saiBol1.JH378276            2786601 2 +   3282555 AC
i saiBol1.JH378276          C 0 I 1
s cebCap1.NW_016107979v1       743893 2 +   1024465 AC
i cebCap1.NW_016107979v1    C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873530           29588785 0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e manLeu1.NW_012105520v1      1120510 53197 +   1458659 I
e chlSab2.chr26               7728529 0 +  58131712 I
e panTro5.chrY               25716833 18788 -  26350515 I

a score=5595.000000
s hg38.chr15_KI270850v1_alt    267507 4 +    430880 AAGA
s gorGor5.CYUI01015946v1       366079 4 +    378907 AAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18908331 4 - 121039945 AAGA
i nomLeu3.chr6              I 4 C 0
s rheMac8.chr7               62681541 4 + 169600520 AAGA
i rheMac8.chr7              I 4 C 0
s macFas5.chr7              106622407 4 - 171882078 AAGA
i macFas5.chr7              I 4 C 0
s cebCap1.NW_016107979v1       743895 4 +   1024465 AAGA
i cebCap1.NW_016107979v1    C 0 I 49
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873530           29588785 0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e manLeu1.NW_012105520v1      1120510 53197 +   1458659 I
e chlSab2.chr26               7728529 0 +  58131712 I
e saiBol1.JH378276            2786603 1 +   3282555 I
e panTro5.chrY               25716833 18788 -  26350515 I

a score=232083.000000
s hg38.chr15_KI270850v1_alt    267511 288 +    430880 CAGGGTAGTggccaggcatggtggctcacacctgtaatcccagcaatttgggaggccaaggcgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatgatgaaaccccatctctactaaaaacacaaaaattagctgggcatggtggcaggtgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacccaggagatggaagttgcagtaagccaagattgtgccattgcactccagccagggggacaagagggagacttca
s gorGor5.CYUI01015946v1       366083 287 +    378907 CAGGGTAATggccaggcatggtggctcacacctgtaatcccagcaatttgggaggccaaggcaggtggatcacctgaggtcaggagttcgagaccagcctggccaacatgatgaaaccccgtctctactaaaaacacaaaaattagctgggcatggtggcaggtgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacccaggagatggaggttgcagtaagccaagattgtgccattgca-tccagccagggggacaagagggagacttca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18908335 285 - 121039945 CAGGGTAGTggccaggcacggtggctcacacctgtaatcccagcaatttgggaggccgaggtgggcggatcacctgaggttaggagtttgagaccagcctggccaac---atgaaacctcatctctactaaaaatacaaaaattagctgggcatggtggcagatgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacctgggaggcggaggttgcggtgagctgagattgcgccattgtactccagcctgggcaacaagagcgaaactccg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62681545 287 + 169600520 CAGGGTAGTggctgggcacggtgactcacacctgtaatcccagcaatttgggaggccgaggcaggcacatcatctgaggtcaggagct-gagaccagcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcatggtgacaggtgcttgtaatcccagctactcaggaggctgagccaggagaattgcttgaacctgggaggtggaggttgcagtaaggcaaaattgcaccattgcactgcagcctgggggacaagagtgagagttca
i rheMac8.chr7              C 0 I 129
s macFas5.chr7              106622411 287 - 171882078 CAGGGTAGTggctgggcacggtgactcacacctgtaatcccagcaatttgggaggccgaggcaggcacatcatctgaggtcaggagct-gagaccagcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcatggtgacaggtgcctgtaatcccagctactcaggaggctgagccaggagaattgcttgaacctgggaggtggaggttgcagtaaggcaaaattgcaccattgcactgcagcctgggggacaagagtgagagttca
i macFas5.chr7              C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       743899  49 +   1024465 I
e otoGar3.GL873530           29588785   0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e manLeu1.NW_012105520v1      1120510 53197 +   1458659 I
e chlSab2.chr26               7728529   0 +  58131712 I
e saiBol1.JH378276            2786603   1 +   3282555 I
e panTro5.chrY               25716833 18788 -  26350515 I

a score=1304.000000
s hg38.chr15_KI270850v1_alt    267799 4 +    430880 cctc
s gorGor5.CYUI01015946v1       366370 4 +    378907 cctc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18908620 4 - 121039945 tctc
i nomLeu3.chr6              C 0 I 431
s macFas5.chr7              106622698 2 - 171882078 --tc
i macFas5.chr7              C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       743899 49 +   1024465 I
e otoGar3.GL873530           29588785 0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e manLeu1.NW_012105520v1      1120510 53197 +   1458659 I
e chlSab2.chr26               7728529 0 +  58131712 I
e rheMac8.chr7               62681832 129 + 169600520 I
e saiBol1.JH378276            2786603 1 +   3282555 I
e panTro5.chrY               25716833 18788 -  26350515 I

a score=2838.000000
s hg38.chr15_KI270850v1_alt    267803 5 +    430880 gaaag
s gorGor5.CYUI01015946v1       366374 5 +    378907 gaaag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18909055 5 - 121039945 gaaag
i nomLeu3.chr6              I 431 C 0
s macFas5.chr7              106622700 5 - 171882078 gaaag
i macFas5.chr7              C 0 I 120
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       743899 49 +   1024465 I
e otoGar3.GL873530           29588785 0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e manLeu1.NW_012105520v1      1120510 53197 +   1458659 I
e chlSab2.chr26               7728529 0 +  58131712 I
e rheMac8.chr7               62681832 129 + 169600520 I
e saiBol1.JH378276            2786603 1 +   3282555 I
e panTro5.chrY               25716833 18788 -  26350515 I

a score=111.000000
s hg38.chr15_KI270850v1_alt    267808 2 +    430880 aC
s gorGor5.CYUI01015946v1       366379 2 +    378907 aa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18909060 2 - 121039945 ga
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106622825 2 - 171882078 aa
i macFas5.chr7              I 120 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       743899 49 +   1024465 I
e otoGar3.GL873530           29588785 0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e manLeu1.NW_012105520v1      1120510 53197 +   1458659 I
e chlSab2.chr26               7728529 0 +  58131712 I
e rheMac8.chr7               62681832 129 + 169600520 I
e saiBol1.JH378276            2786603 1 +   3282555 I
e panTro5.chrY               25716833 18788 -  26350515 I

a score=60170.000000
s hg38.chr15_KI270850v1_alt    267810 34 +    430880 AGACAGACAGGCTAGTACGTTTTCCACAAATTTC
s gorGor5.CYUI01015946v1       366381 34 +    378907 aGACAGGCAGGCTAGTATATTTTCCACAAATTTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18909062 34 - 121039945 agaaagaCAGGGTAGTACATTATCCGCGAATTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62681961 34 + 169600520 aGACAGACAGGGTAGTACATTTTCCATGAATTTC
i rheMac8.chr7              I 129 C 0
s macFas5.chr7              106622827 34 - 171882078 aGACAGACAGGGTAGTACATTTTCCATGAATTTC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        34109 34 +    759272 AGACAGACAGGGTAGTACATTTTCCATGAATTTC
i cerAty1.NW_012003658v1    N 0 C 0
s saiBol1.JH378276            2786604 34 +   3282555 AGAAAGACAGGGTAGTCCATTTTCCAGGAATTTC
i saiBol1.JH378276          I 1 C 0
s otoGar3.GL873530           29588785 31 +  36342412 AGAAAAAGAAGGTAGTACATGT---AGAAATTTA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       743899 49 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e manLeu1.NW_012105520v1      1120510 53197 +   1458659 I
e chlSab2.chr26               7728529  0 +  58131712 I
e panTro5.chrY               25716833 18788 -  26350515 I

a score=39594.000000
s hg38.chr15_KI270850v1_alt    267844 29 +    430880 AATTTTACTCTCTTCCCCcaccacacaca--
s panTro5.chrY               25735621 29 -  26350515 AATTTTACTCTCTTCCCCACCCCCCCCCC--
i panTro5.chrY              I 18788 C 0
s gorGor5.CYUI01015946v1       366415 22 +    378907 AATTTTACTCTCTTCCCca-------cca--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18909096 23 - 121039945 AATTTTACTCCCTTCCCCCA------CCA--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62681995 23 + 169600520 AATTTTACTCTCTTCCCCCA------CCA--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106622861 23 - 171882078 AATTTTACTCTCTTCCCCCA------CCA--
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        34143 23 +    759272 AATTTTACTCTCTTCCCCCA------CCA--
i cerAty1.NW_012003658v1    C 0 C 0
s saiBol1.JH378276            2786638 21 +   3282555 CATTTTACTCCCTTCCCCCA------C----
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530           29588816 25 +  36342412 AATATTATGTTCTTGCCCCC------CCAAA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       743899 49 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e manLeu1.NW_012105520v1      1120510 53197 +   1458659 I
e chlSab2.chr26               7728529  0 +  58131712 I

a score=33178.000000
s hg38.chr15_KI270850v1_alt    267873 17 +    430880 cacacacacacaAAGCA
s panTro5.chrY               25735650 17 -  26350515 CACACACACACAAAGCA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       366437 17 +    378907 cacacacacacacaGCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18909119 17 - 121039945 CACACACACAAAAAGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62682018 16 + 169600520 CACAAACACA-AAAGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106622884 16 - 171882078 CACAAACACA-AAAGCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        34166 16 +    759272 CACAAACACA-AAAGCA
i cerAty1.NW_012003658v1    C 0 C 0
s saiBol1.JH378276            2786659 14 +   3282555 ---GCACAAAAAAAGTA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       743948 17 +   1024465 CACACACAAAAAAAGTA
i cebCap1.NW_016107979v1    I 49 C 0
s otoGar3.GL873530           29588841 10 +  36342412 -------AGAAAAAGTA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e manLeu1.NW_012105520v1      1120510 53197 +   1458659 I
e chlSab2.chr26               7728529  0 +  58131712 I

a score=295897.000000
s hg38.chr15_KI270850v1_alt    267890 75 +    430880 TTTGAGGGATGGGAGG-AAGAAACTGAGATCACAGGGAAAATTGTAAGAGACATTCAGAAGGACAGGTCTTAGAAA
s panTro5.chrY               25735667 75 -  26350515 TTTGAGGGATGGGAGG-AAGAAACTGAGATCACAGGGCAAATATTAAGAGACATTCAGAAGGACAGGTCTGAGAAA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       366454 75 +    378907 TTTGAGGGATGGGAGG-AAGAAACTGAGATCACAGGGAAAATTGTAAGAGACATTCAGAAGGACAGGTCTTAGAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18909136 75 - 121039945 TCTGAGGGATGGGAAG-AAGAAACTGAGATCACAGGGAAAATAATAAGAGACATTCAGAAGGACAGGTCTTAGAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62682034 75 + 169600520 TTTGAGGGATGGGAGG-AAGAAAGTGAGATCACAGGGAAAATAGTAAGAGACATTCAGAAGGACAGGTCTTAGAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106622900 75 - 171882078 TTTGAGGGATGGGAGG-AAGAAAGTGAGATCACAGGGAAAATAGTAAGAGACATTCAGAAGGACAGGTCTTAGAAA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        34182 75 +    759272 TTTGAGGGATGGGAGG-AAGAAAGTGAGATCACAGGGAAAATAGTAAGGGACATTCAGAAGGACAGGTCTTAGAAA
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1173707 75 +   1458659 TTTGAGGGATGGGAGA-AAGAAACTGAGATCACAAGGAAAATAGTAAGAGACATTCAGAAGGACAGGTCTTAGAAA
i manLeu1.NW_012105520v1    I 53197 C 0
s saiBol1.JH378276            2786673 75 +   3282555 TTTGAGCAATGGGAGG-AAGAAACTGAGATCACAGGAAAAATAGTAAAAGACATTCAGAAGGACGGGTCTTAGAAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       743965 75 +   1024465 TTTGAGCAATGGGAGG-AAGAAACTGAGATCACAGGAAAAGTAGTAAAAGACATTCAGAAGGACAGGTCTTAGAAA
i cebCap1.NW_016107979v1    C 0 I 23
s otoGar3.GL873530           29588851 45 +  36342412 TATGAGGGATAGGGGGTTAGAAAGT-------------------------------AGTTGGACAAGTCTTAGAAA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e chlSab2.chr26               7728529  0 +  58131712 I

a score=30271.000000
s hg38.chr15_KI270850v1_alt    267965 21 +    430880 TTTACTAG------TTTGGGGGGG-AGG
s panTro5.chrY               25735742 18 -  26350515 TTTACTAG------TTTGGGGGTG----
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       366529 22 +    378907 TTTACTAG------TTTGGGGGGGGGGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18909211 19 - 121039945 TTTACTAG------TTTGGGGGGG---G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62682109 21 + 169600520 TTTACTAG------TTTCGGGGGG-AGG
i rheMac8.chr7              C 0 I 7
s macFas5.chr7              106622975 21 - 171882078 TTTACTAG------TTTCGGGGGG-AGG
i macFas5.chr7              C 0 I 7
s cerAty1.NW_012003658v1        34257 21 +    759272 TTTACTAG------TTTCGGGGGG-AGG
i cerAty1.NW_012003658v1    C 0 I 7
s manLeu1.NW_012105520v1      1173782 21 +   1458659 TTTACTAG------TTTCGGGGGG-AGG
i manLeu1.NW_012105520v1    C 0 I 20
s saiBol1.JH378276            2786748 10 +   3282555 -------A------TCTGGGGGT-----
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530           29588896 23 +  36342412 CTTAGTAGATAGTTCTTAGGGGG-----
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       744040 23 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e chlSab2.chr26               7728529  0 +  58131712 I

a score=20428.000000
s hg38.chr15_KI270850v1_alt    267986 11 +    430880 TCAGA--ACAGGT
s panTro5.chrY               25735760 13 -  26350515 TCAGAGAACAGTT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       366551 11 +    378907 TCAGA--ACAGGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18909230 13 - 121039945 TCAGAGAACAGTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62682137 13 + 169600520 TCAGAGAGCAGTA
i rheMac8.chr7              I 7 C 0
s macFas5.chr7              106623003 13 - 171882078 TCAGAGAGCAGTA
i macFas5.chr7              I 7 C 0
s cerAty1.NW_012003658v1        34285 13 +    759272 TCAGAGAGCAGTA
i cerAty1.NW_012003658v1    I 7 C 0
s saiBol1.JH378276            2786758 13 +   3282555 TCAGGGAATAGTA
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530           29588919 11 +  36342412 TCAGA--ACAGTG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       744040 23 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e manLeu1.NW_012105520v1      1173803 20 +   1458659 I
e chlSab2.chr26               7728529  0 +  58131712 I

a score=172364.000000
s hg38.chr15_KI270850v1_alt    267997 40 +    430880 GTATATAAAAGAATATTAAGACAGTTCCCAGGTTTAGGCA
s panTro5.chrY               25735773 40 -  26350515 GTATATAAAAGAACGCTAAGACAGTTCTCAGGTTTAGGCA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       366562 40 +    378907 GTATATAAAAGAATATTAAGACAGTTCCCAGGTTTAGGCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18909243 40 - 121039945 GCATATAAAAGAACGCTAAGACAGTTCCCAGGTTTAGGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62682150 40 + 169600520 GTATATAAAAGAATGCTAGGACAGTTCCCAGGTTTAGGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106623016 40 - 171882078 GTATATAAAAGAATGCTAGGACAGTTCCCAGGTTTAGGCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        34298 40 +    759272 GTATATAAAAGAATGCTAGGACAGTTCCCAGGTTTAGGCA
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1173823 40 +   1458659 GTATATAAAAGAATGCTAGGACAGTTCCCAGGTTTGCGCA
i manLeu1.NW_012105520v1    I 20 C 0
s saiBol1.JH378276            2786771 40 +   3282555 GTATATAAAAGAACGCTAAGACAGTTCCCAGGTTTAGGCA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       744063 40 +   1024465 GTATATAAAAGAACGCTAAGACAGTTCCCAGGTTTAGGCA
i cebCap1.NW_016107979v1    I 23 I 107
s otoGar3.GL873530           29588930 40 +  36342412 CTGTAAAAAAGAACTAGATGACAGTTCCCACATTTGGGCA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e chlSab2.chr26               7728529  0 +  58131712 I

a score=113450.000000
s hg38.chr15_KI270850v1_alt    268037  38 +    430880 TATGTGACTA--------------------------------------------------------------------------------------------------GATAGAGTGCTAGGAGATGGATACGTGA----
s panTro5.chrY               25735813  38 -  26350515 TATGTGACTA--------------------------------------------------------------------------------------------------GATAGAGTGCTAGGAGGTGGATACATGA----
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       366602  38 +    378907 TATGTGACTA--------------------------------------------------------------------------------------------------GATAGAGTGCTAGGAGGTGGATACATGA----
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18909283 107 - 121039945 TGGGTGACTGGTTTGATTATTTCATTTTGTCCCACTCACAATGACAAGGAG--------------------A---------ATTATTGATGGAACACATGATGTGGCTGATAGAGTGCTATAAGGTGAATACATGA----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62682190 107 + 169600520 TGGGTGACTAGTTTGATTATTTCATTTTGTCCCACTCGCAGTTACAAGGAG--------------------A---------ATTATTGATGGAACACATGATAGGGCTGATAGAGTGCTAGGAAGCGGATACATGA----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106623056 107 - 171882078 TGGGTGACTAGTTTGATTATTTCATTTTGTCCCACTCGCAGTTACAAGGAG--------------------A---------ATTATTGATGGAACACATGATAGGGCTGATAGAGTGCTAGGAAGCGGATACATGA----
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        34338 107 +    759272 TGGGTGACTAGTTTGATTATTTCATTTTGTCCTACTCACA---------ATTACAAGGAG-----------A---------ATTATTGATGGAACACATGATAGGGCTGATAGAGTGCTAGGAAGTGGATACACGA----
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1173863 107 +   1458659 TGGGTGACTAGTTTGATTATTTCATTTTGTCCCACCCACAATGACAAGGAG--------------------A---------ATTGTTGATGGAACACATGATGGGACTGATACAGTGCTAAGAGGTAGATACATGA----
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2786811 107 +   3282555 CGGGTGACTAGTTTAATTATTTCATTTTGTCCCACACACA--------------------CTCACAAGGAGA---------ATTACTGAGGAAACACATGATGGGGCTGATACAGTGCTAGAAGGTGGGTAAATGC----
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530           29588970 105 +  36342412 TGAGTGACTAGTTTCATTATTGCATTCTGT-CTGCCCACA-------------------------------ACACAAAAAGATTTGCtgaggaaaacatgataagggtggtggagtgctaggaggcagat---tgagtgg
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       744103 107 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e chlSab2.chr26               7728529   0 +  58131712 I

a score=995153.000000
s hg38.chr15_KI270850v1_alt    268075 251 +    430880 AAAtttaaatatcatcattttgaacacccatgtcac-tccaagtgagattccc-taa-atatatgatatacagacagatatatgggtttgaaactctggagatgaat-------------acaaatttaggagtccctggaacacaggtcatgacttaagtaatgggagt--caaagattactcagagaaagcacagaatgagaagagaagaa----gtaggacAAGGAAGAAGAGATCGGAGGAGACCAAGAAAGGGTGATAAGATCAAAAC
s panTro5.chrY               25735851 256 -  26350515 AAATTTAAATATCATCATTTTGAACACCCATGTCAC-TCCAAGTGAGATTCCC-TAACATATATGATATACAGACAGTTATATGGGTTTGAAACTCCGGAGATGAAT-------------ACAAATTTAGGAATCCCTGCAACACAGGTCATGACTTAAGTAATGGGAGC--CAAAGATTACTCAGAGAAAGCACGGAATGagaagagaagaaagaagtaggacaaggaagaagaGATCGGAGGAGACCAAGGCAGGGTGATAAGATCAAAAC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       366640 247 +    378907 AAATTTAAAT---ATCATTTTGAACACCCATGTCAC-TCCAAGTGAGATTCCC-TAA-ATATATGATATGCAGACAGATATATGGGTTTGAAACTCTGGAGATGAAT-------------ACGGATTTAGGAGTCCCTGGAACACAGGTCATGACTTAAGTAATGGGAGT--CAAAGATTACTCAGAGAAAGCACAGAATGAGAAGA-AAGAA----GTAGGCCAAGGAAGAAGAGATCGGAGGAGACCAAGAAAGGGTGATAAGATCAAAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18909390 253 - 121039945 AAATTTAAAT---ATCATTTTGAACACGCATGTCAC-ACCAAGTGAGATTCCC-TAACATATATGACATGCAGACAGATATATGGGTTTGAAACTCTGGAGACGCAC-------------ACGGATTTAGGAATCCCTGGAACACAGGTCATGACTTAAGTAATACGAGT--CAAAGATTACTCAGAGAAAGCACAGAATGAGAAGAGAAGAAAGAAGTAGGCCAAGGAAGAAGAGACCGGAGGAGACCAAGGCAGGGTGATAAGATCAAAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62682297 256 + 169600520 AAATTTAAATATCATCATTTTGAACACCCATGTTAC-TCCAAGTGAGATTCCC-TAACATATATGATATACAGACAGATATATGGGCTTGAAACTCTGGAGATGAAT-------------ACAGATTTAGGAATCCCTGGAACACAGGTCATGACTTAAGTAATGGGAGT--CAAAGATTGCTCAGAGAAAACACAGGATGAAAAGAGAAGAAAGAAGTAGGCCAACGAAGAAGAGATCGGAGGAGACCAAGGCAGGGTGATAAGATCAAAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106623163 256 - 171882078 AAATTTAAATATCATCATTTTGAACACCCATGTTAC-TCCAAGTGAGATTCCC-TAACATATATGATATACAGACAGATATATGGGCTTGAAACTCTGGAGATGAAT-------------ACAGATTTAGGAATCCCTGGAACACAGGTCATGACTTAAGTAATGGGAGT--CAAAGATTACTCAGAGAAAACACAGGATGAAAAGAGAAGAAAGAAGTAGGCCAACGAAGAAGAGATCGGAGGAGACCAAGGCAGGGTGATAAGATCAAAAC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        34445 255 +    759272 AAATTTAAATATCATCATTTTGAACACCCATGTTAC-TCCAAGTGAGATTCCC-TAACATATATGATATACAGACAGATATATGGGCTTGAAACTCTGGAGATGAAT-------------ATGGATTTAGGAATCCCTGGAACACAGGTCATGACTTAAGTAATGGGAGT--CAAAGATTACTCAGAGAAAACACAGAATGAAAAGAGAAGAAAGAAGTAGGCCAAGGAAGAAGAGATCAGAGGAGACCAAGGCA-GGTGATAAGATCAAAAC
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1173970 253 +   1458659 AGATTTAAATATCATCATTTTGAACACCCATGTTAC-TCCAAGTGAGATTCCC-TAACATATATGATATACAGACAGATATATGGGTTTGAAAGTC--GAAATGAAT-------------ATGGATTTAGGAATCCCTGGAACACAGGTCATGACTTAAGTAATGGGAGT--CAAAGATTACTCAGAGAAAGCACAGAATGAAAAGAGAAGAAAGAAGTAGGCCAAGGAAGAAGAGATCAGAGGAGACCAAGGCA-GATGATAAGATCAAAAC
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2786918 248 +   3282555 AAATTTAAATGTCATCATTTTGAATACCCATGGCAC-TCCAAGTAAGACTCCC-TAACATGTATGATATACAGACAGATATATGGGTTT-AAACTCTGGAAATGAAT-------------GCAGATTTAGGAATCCCTAGAACAGAGGTCATGACTAAAGTCATGGGAGT--AAAGGATTATTC----AAAGCACTGAATGAGAAAAGAAGAAAGAAGTAGGCCAAAGAAGAACAGGTCA---GAGACCCAGGAAGGTTGGTAAGATAAAAAT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       744210 248 +   1024465 AAATTTAAATGTCATCATTTTGAACACCCATGGCAC-TCCAAGTGAGACTCCC-TAACAGGTATGACATACAGACAGATATATGGGTTT-AAACTCTGGAAATGAAT-------------GCGGATTTAGGAATCCCTAGAACAGAGGTCATGACTAAAGTAATGGGAGT--AAAGGATTATTC----AAAGCACTGAATGAGAAAAGAAGAAAGAAGTAGGCCAAGGAAGAACAGGTCA---GAGACCCAAGAAGGGTGATAAGATAAAAAT
i cebCap1.NW_016107979v1    I 107 I 112
s otoGar3.GL873530           29589075 265 +  36342412 aaatttaaatgtcgttatttggaa-agccatggcacatccaagtgatattcccttaacatatataatacatagacagatatatgggtttgaaactc--aagataaattttagctagatacacagatttaggaatccctgaaatataggtcatgacttaagtaatgggaatagaagagattactcagagaaagcagagactaaaaagagaagag----gcggaccaa-gaaGAAGAGATCAGAGCAAAGCAAGGCAGAGTGATAAGATAAAAAC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e chlSab2.chr26               7728529   0 +  58131712 I

a score=341664.000000
s hg38.chr15_KI270850v1_alt    268326 120 +    430880 AGGAGAAAAGAATCCGACAGAAGTCTCATTTGATTATCATGTCCCTTCCCAGAGGACAGGGACATGT----CTTTTTT-----------GTCTTTTATAC---CCAATTATCACAGGTCCTGGTGCAGCAGACACACA
s panTro5.chrY               25736107 120 -  26350515 AGGAGAAAAGAATCCGATAGAAGTCTCATTCGATTATCATGTCCCTTCCCAGAGGACAGGGACATGC----CTTTTTT-----------GTCTTTTATAC---CCAATTATCACAGGTCCTGGTGCAGAAGACACACA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       366887 118 +    378907 AGGAGAAAAGAATCCGATAGAAGTCTCATTTGATTATCATGTCCCTTCCCAGAGGACAAGGACATGT----CTTTTTT-----------GTCTTCTATAC---CCAATTATCACAGGTCCTGGTGCAGCAG--ATACA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18909643 120 - 121039945 AGGAGAAAAGAATCCAATAAACGTCCCATTCAATTATCATGTCCCTTCCCAGAGGACAGGGACATGC----CTTTTTT-----------GTCTTTTATAC---CCAATTACCACAGGTCCTGGCACAGAAGCCACACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62682553 131 + 169600520 AGGAGAAAAGAATCCGATAGAAGTCCCATTCGATTATCATGTCCCTTCCCAGAGGACATGGACATGC----tttttttttttttttttaatcttttATAC---CCAATTATCACAGGTCCTGGCACAGAAGCCACACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106623419 131 - 171882078 AGGAGAAAAGAATCCGATAGAAGTCCCATTCGATTATCATGTCCCTTCCCAGAGGACATGGACATGC----tttttttttttttttttaatcttttATAC---CCAATTATCACAGGTCCTGGCACAGAAGCCACACA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        34700 135 +    759272 AGGAGAAAAGAATCCGATAGAAGTCCCATTCGATTATCATGTCCCTTCCCAGAGGACATGGACATGCCtttttttttttttttttttttatcttttATAC---CCAATTATCACAGGTCCTGGCACAGAAGCCCCACA
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1174223 119 +   1458659 AGGAGAAAAGAATCCGATAGAAGTCCCATTCGATTATCATGTCCCTTCCCAGAGGACATGGAGATGC----CTTTTT------------ATCTTTTATAC---CCAATTATCACAGGTCCTGGCACAGAAGCCACACA
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2787166 108 +   3282555 --GACACGGTAATCCAATGGAAGTCCCATCAGCTTATCGG-----TTCACAGAGGACAGGGATATGC----CTAATTT-----------GTCTTTGACAC---TCAATTATCACAGAGCCTGGCACAGAAGCC-----
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530           29589340 118 +  36342412 AGGAGGCAGTCATCTGATGGGAGTcccattagattatcag-----ttcccagaggacagggatgtgt----cttattt-----------gtttttaataccaaccactcatcatggagtctggcatagaatccaatga
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       744458 112 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e chlSab2.chr26               7728529   0 +  58131712 I

a score=382783.000000
s hg38.chr15_KI270850v1_alt    268446 123 +    430880 G-TTTTTTTTTTTTTAA----------TTGTGTTGTACTACTCACAGTTTCCTGTATTCACCAGGGGAGAAAAAAGTAAGTATAAAGAAGCACAGACACAGATGTTTTTACACTGTGTACTAAAGGGGTcagat
s panTro5.chrY               25736227 121 -  26350515 G-TTTTTTTTTTT--AA----------TTGTGTTGTACTATTCACAGTTTCCTGTATCCACCAGGGGAGGAAAAAGTAAGtataaacaagtacagacatagatgtttttacactgtatgctaaaggggtcagat
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       367005 123 +    378907 G-TTTTTTTTTTTTTAA----------TTGTGTTGTACTATTCACAGTTTCCTGTACTCACCAGGGGAGAAAAAAGTAAGTATAAAGAAGCACAGACACAGATGTTTTTACACTGTGTACTAAAGGGGTcagat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18909763 117 - 121039945 G-TCTTTTTT-----AA----------TTGTGTTCTACCATTCACAGTTTCCTATATCCACC-GGGGAGAAAAAAgcaagtataaactagcacagacatagatttttttacactgtatactaaaggggtcagat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62682684 116 + 169600520 G-TTTTTTTT-----AA----------TTGTGTTCTACTATT--CAGTTTCCCGTATCCACCAGGGGAGAAAAAAGTAAGtataaacaagcacagacatagatttttttacactgtatactaaaggggtcagat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106623550 116 - 171882078 G-TTTTTTTA-----AA----------TTGTGTTCTACTATT--CAGTTTCCCGTATCCACCAGGGGAGAAAAAAGTAAGtataaacaagcacagacatagatttttttacactgtatactaaaggggtcagat
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        34835 116 +    759272 T-TTTTTTTT-----AA----------TTGTGTTCTACTATT--CAGTTTCCTGTATCCACCAGGGGAGAAAAAAGTAAGtataaacaagcacagacatagatttttttacactgtatactaaaggggtcagat
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1174342 117 +   1458659 GTTTTTTTTT-----AA----------TTGTGTTCTACTATT--CAGTTTCCTGTATCCACCAGGGGAGAAAAAAGTAAGtataaacaagcacagacatagatttttttacactgtatactaaaggggtcagat
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2787274 114 +   3282555 --TTTTTTGTTTTTTAA----------TTGTGTCctactattaacagtttcctgtacccaccag----aaaaaaaagaggtataaacaagc----atatagatttttttacactgtatactaaaggggtcggat
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       744570 108 +   1024465 -ttttttttttttttAA----------TTGTGTCCTACTATTAACAGTTTCCTGTAGCCACCAG----AAAAGAAAGAGGTATAAACA-----------AGAtttttttacactgtatactaaaagggtcagat
i cebCap1.NW_016107979v1    I 112 C 0
s otoGar3.GL873530           29589458 119 +  36342412 ---atttttC-----AAAAATACTTTTCTGTGTTCTATTATTAACAGTTTTCTGTATCCACCCAGAAGGGAAAAACCAAGTATAAAAAAGCATTGAgggcagtgc-------ctgtggctcaaaggagtagggc
i otoGar3.GL873530          C 0 I 154
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e chlSab2.chr26               7728529   0 +  58131712 I

a score=295639.000000
s hg38.chr15_KI270850v1_alt    268569 86 +    430880 tatacacaatattttatgccttacttttttacttaatatatcttagaagtttgcacgtgctcttatggaaagactggctgca--tttt
s panTro5.chrY               25736348 86 -  26350515 tatacacaatactttatgccttacttttttacctaatatatcttagaagtttgcacatgctcttatggaaagactggccgca--tttt
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       367128 86 +    378907 tatacacaatattttatgccttacttttttacttaatatatcttagaagtttgcacatgctcttatggaaagactggctgca--tttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18909880 88 - 121039945 tatatacaatattttatgccttacttttttacttaatatatcttagaagtttgcacatgcttttatggaaagactggctgcatttttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62682800 87 + 169600520 tatacacaatattttatgcctcacttttttacctaatatatattagaagtttgtacatgttcttatggaaagactggctgca-ttttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106623666 87 - 171882078 tatacacaatattttatgcctcactttttaacctaatatatattagaagtttgtacatgttcttatggaaagactggctgca-ttttt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        34951 87 +    759272 tatacacaatattttatgcctcacttttttacttaatatatcttagaagtttgtacatgttcttatggaaagactggctgca-ttttt
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1174459 86 +   1458659 tatacacaatattttatgcctcacttttttacttaatatatcttagaagtttgcacatgctcttatgaaaagactacttgca--tttt
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2787388 84 +   3282555 tat--acaatattttatgccttgctttttcacttaatgtatcttagaactttgcaaatgctcttgtggaaagactggctgcc--tttt
i saiBol1.JH378276          C 0 I 4
s cebCap1.NW_016107979v1       744678 86 +   1024465 tatacacaatattttacgccttgctttttcacttaatgtatcttagaactttgcaaatgctcttgtggaaagattagttgct--tttt
i cebCap1.NW_016107979v1    C 0 I 24
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873530           29589577 154 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e chlSab2.chr26               7728529  0 +  58131712 I

a score=28899.000000
s hg38.chr15_KI270850v1_alt    268655 24 +    430880 ttggtccacaacagaacaacagaa-----
s panTro5.chrY               25736434 24 -  26350515 ttggtccacaacagaacaacagaa-----
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       367214 24 +    378907 ttggtccacaacagaacaacagaa-----
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18909968 16 - 121039945 ttggtct--------acaacagaa-----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62682887 16 + 169600520 ttgttct--------acaacagaa-----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106623753 16 - 171882078 ttgttct--------acaacagaa-----
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        35038 16 +    759272 ttggtct--------acaacagaa-----
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1174545 16 +   1458659 ttggtct--------acaacagaa-----
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2787476 20 +   3282555 ttggctt---------ccacagaatattc
i saiBol1.JH378276          I 4 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       744764 24 +   1024465 I
e otoGar3.GL873530           29589577 154 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e chlSab2.chr26               7728529  0 +  58131712 I

a score=106040.000000
s hg38.chr15_KI270850v1_alt    268679 29 +    430880 tatt-----ataaaacggtacactataattttta
s panTro5.chrY               25736458 34 -  26350515 tattctattataaaactgtacactataattttta
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       367238 34 +    378907 tattctattataaaacggtacactataattttta
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18909984 34 - 121039945 tattctattataaaactgtacactataattttta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62682903 34 + 169600520 tattctattataaaactgtacactataattttta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106623769 34 - 171882078 tattctattataaaactgtacactataattttta
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        35054 34 +    759272 tattctattataaaactgtaccctataattttta
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1174561 32 +   1458659 tattctattataaaac--tacactataatcttta
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2787496 29 +   3282555 -----tattataaaaccgtatactgtaattttta
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       744788 29 +   1024465 -----tattataaaaccgtatactataattttta
i cebCap1.NW_016107979v1    I 24 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873530           29589577 154 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e chlSab2.chr26               7728529  0 +  58131712 I

a score=1255087.000000
s hg38.chr15_KI270850v1_alt    268708 299 +    430880 tttaaccaactctttattggtggacattaaga-----------atgGAGGaatgtttcaacaaaggaacaatcaacagtatcaaaatactgcagaggggacaatttggggactaagaggggagccactggatttgacaactaggagataaattttagtgcaacgatgaaggcagaatccagagtataatgagctcagtgaaaaaaggtgaagaCATGTAGCTTATTCTCTCAAGAAACTAGGCTATGATAAACTGGC-----AGAGGCTCTAAG----AGTGGGAGGTGAGTTGTTTTCTCCTTCATGTAAATATATTT
s panTro5.chrY               25736492 299 -  26350515 tttaaccaactctttattggtggacattaaga-----------atggaggaatgtttcaacaaaggaacaatcaacagtatcaaaatactgcagaggggtccatttggggactaataggggagccactggatttggcaactaggagataaattttagcgcaatgatgaaggcagaatccagatcataatgagctcagtgaaaaaaggtgaagaCATGTAGCTTATTCTCTCAAGAAACTAGGCTATGATAAACTGGC-----AGAGGCTGTAAG----AGTAGGAGGTGAGTTGTTTTCTCCTTCATGTAAATATATTT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       367272 299 +    378907 tttaaccaactctttattggtggacattaaga-----------atggaggaatgtttcaacaaaggaacaatcaacagtatcaaaatactgcagaggggtcaatttggggactaagaggggagccactggatttgacaactaggagataaattttagtgcaacgatgaaggcagaatccagattataatgagctcagtgaaaaaaggtgaagaCATGTAGCTTATTCTCTCAAGAAACTAGGCTATGATAAACTGGC-----AGAGGCTCTAAG----AGTGGGAGGTGAGTTGTTTTCTCCTTCATGTAAATATATTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18910018 298 - 121039945 tttaaccaactctttactggtggacattaaga-----------atggaggaatgtttcaagaagggaacaatcaacaatatcaaaatactgcaga-gggtcaatttggggactaagagggaagtcactggatttggcaactaggagataaattttagcacaatgatgaaggcagaatccagattataatgagctcagtgaaaaaaggtgaagacatgtagcttattctctcaagaaactaggctatgataaactggc-----agaggctgtaag----agtgggaggtgagTTGTTTTCTCCTTCATGTAAATATATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62682937 299 + 169600520 tttaaccagctctttattggcggatattaaga-----------atggaggaatgtttcaacaagggaacaatcaacagtatcaaaatactgcagaggggtcaacttggggactaagaggggagccactggatttggcaactaggagataaattttagcacaatgatgaaggcagaatccacattataatgagctcagtgaaaaaaggtgaagacatatagcttattctcttaagaaactacgctacggtaaactggc-----agaggctgtaag----agtgggcagtgagTTGTTTTCTCCTTCATGTAAATATATTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106623803 299 - 171882078 tttaaccagctctttattggcggatattaaga-----------atggaggaatgtttcaacaagggaacaatcaacagtatcagaatactgcagaggggtcaatttggggactaagaggggagccactggatttggcaactaggagatAAATTTTAGCACAATGATGAAGGCAGAATCCACATTATAATGAGTTCAGTGAAAAAAGGTGAAGACATATAGCTTATTCTCTTAAGAAACTACGCTACGGTAAACTGGC-----AGAGGCTGTAAG----AGTGGGCAGTGAGTTGTTTTCTCCTTCATGTAAATATATTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        35088 299 +    759272 tttaaccagctctttattggtggatattaaga-----------atggaggaatgtttcaacaagggaacaatcaacagtatcaaaatactgcagaggggtcaatttggggactaagaggggagccactggatttggcaactaggagataaattttagcacaatgatgaaggcagaatccagattataatgagctcagtgaaaaaaggtgaagacatatagcttattctctcaagaaactacgctatggtaaactggc-----agaggctgtaag----agtgggcagtgagTTGTTTTCTCCTTCATGTAAATATATTT
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1174593 299 +   1458659 tttaaccagctctttattggtggacatCAAGa-----------atggaggaatgtttcaacaagggaacaatccacagtatcaaaatactacagaggggtcaatttggggactaagaggggagccactagatttggcaactaagaggtaaattttagcgcaacgatgaaggcagaatccagattataatgagctcaatgagaaaaggtgaagaCCTGTAGCTTATTCTCTCAATAAACTAGGTTATGATAAACCGGC-----AGAGGCTGTAAG----AGTAGGAGGTGAGTTGTTTTCTCCTTCATGTAAATATATTT
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2787525 298 +   3282555 tttaaccaactctttattggtacacattaaga-----------atggaggaatggttcaacaagggaacaatcaacagtatcagaatcctgcagaggggtcaatttgggg-ctaagagaggagcccctggatttggcaactaggagatacattTTAGTGCAAGAATGAAGGCAGAGTCTAGATTATAATGAGTTCAGTGAAAAAAGGTGAAGACATATAGCTTATTCTCTCAAGATACTAGGCTATGATAAATTGGC-----AGAGACTATAAA----AGTGGGAGGTGAGTTGTTTTCTCCTCCATGTAAATATACTT
i saiBol1.JH378276          C 0 M 556
s cebCap1.NW_016107979v1       744817 298 +   1024465 tttaaccaactctttattggtacacattaaga-----------atggaggaatgtttcaaaaagggaataatcaacagtatcaaaatcctgcagaggggtcaatttgggg-ctgagagaggagccactggatttgccaactaggagatacattTTAGTGCAAGAATGAAGGCAGAATCAAGATTATAATGAGTTCAGTGAAAAAAGGTGAATACATATAGCTTGTTCTCTCAAGATACTAGGCTATGATAAACTGGC-----AGAGACTATAGA----AGTGGGAGGTGAGTTGTTTTCTCCTCCATGTAAATATACTT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530           29589731 303 +  36342412 TTTAATCAATTCTTTATCAGTGAACATTAATAAATGTTTGTTGATAGGGAAATATTTCAACAAGAG----ATCAACAGTGTCAAAAGGCTGGA-AGGGGTCAATTTTGGA---AAGAAAAAAGCCACTGGATTTGGCAACTAAGAGATAAATTTTAATGCAACAATGAAGGCAGAATCCAGATTATAATGAGTTAAGTGAA-----TTAAAGATAAATAGATTATTTCCTCAAAAAACTAGACT--GAGAAACTGGCCAAAAGGTGGCTATAAGATACAGTAGGAGGTGAACTATTTT-TCCTTAATGCATATATATTT
i otoGar3.GL873530          I 154 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e chlSab2.chr26               7728529   0 +  58131712 I

a score=752393.000000
s hg38.chr15_KI270850v1_alt    269007 256 +    430880 ACCTTTT-AAACACTAGGCCCAATTTTATATCCTATTTCATTTAACTTtatgaacatatttatgtatgtatgcatgtatgtatgtatctcatgtGGTGTTTTAGACACTGAAAAATA-----ACTCATTTCT---ATTATAAAACTGATATCTTTAGATGTTCAGAAGCAACTTCCTAAAAGGAGGTAGCAG-TAATGGAGCTATGTCTATCATTCTTTCCCATCAACCCCCTTGATGGAGA-TGTAAACATGTGTCCATCAAGCCT
s panTro5.chrY               25736791 259 -  26350515 ACTTTTTTAAACACTAGGCCCAATTTTATATCCTACTTCATTTAACTTTATGAACATACTtatgtatgtatgcatgtatgtatgtatgtcatgtGATATTTTAGACACTGAAAAATA-----ACTCATTTCTGCTATTATAAAACTGATATCTTTAGATGTTCAGATGCAACTTCCTAAAAGGAGGTAGCAG-TAATGGAGCTATGTCTATCATTCTTTCC-ATCAACCCCCTTGCTGGAGA-TGTAAACATGTGTCCATCAAGCCT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       367571 256 +    378907 ACCTTTT-AAACACTAGGCCCAATTTTATATCCTATTTCATTTAACTTtatgaacatatttatgtatgtatgcatgtatgtatgtatctcatgtgatgtTTTAGACACTGAAAAATA-----ACTCATTTCT---ATTATAAAACTGATATCTTTAGATGTTCAGAAGCAACTTCCTAAAAGGAGGTAGCAG-TAATGGAGCTATGTCTATCAGTCTTTCCCATCAACCCCCTTGCTGGAGA-TGTAAACATGTGTCCATCAAGCCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18910316 246 - 121039945 ACTTTTTTAAACACTAGGCCCAATTTTATATCCTGCTTCATTTAACTTT-TGAAtatgtttatgtatgtatgtatg------------ttatgtaatgtTTTAGACACTGAAAAAAA-----CCTCATTTCTGCTATTATAAAACTGTTATCTTTAGATATTCAGAAGCAACTTCCTAAAAGGAGGTAGCAG-TAATGGAGCTACGTCTATCATTCTTTCC-ATCAATCCCCTTGCTGGAGA-TGTAAACATGTGTCCATCAAGCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62683236 255 + 169600520 ACTTTTTTAAACACTAGGCCCAATTTTATACCCAACTTCA-TTAATTTTATGAACATGTTtatgtaagtatgtatatatgtatg----ttatgtaatgtTTTAGACACTGAAAAATA-----ACTCATTTCTGCTATTATAAAACTGTTATCTTTAGATGTTCAGAAGCAACTCCCTAAAACTAGGTAGCAG-TAATGGAGCTATGTCTATCATTCTTTCCCATCAACCTCCTTGCTGGAAA-TGTAAACATGTGTCCATCAAGCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106624102 255 - 171882078 ACTTTTTTAAACACTAGGCCCAATTTTATACCCAACTTCA-TTAATTTTACGAACATGTTtatgtaagtatgtatatatgtatg----ttatgtaatgtTTTAGACACTGAAAAATA-----ACTCATTTCTGCTATTATAAAACTGTTATCTTTAGATGTTCAGAAGCAACTCCCTAAAACTAGGTAGCAG-TAATGGAGCTATGTCTATCATTCTTTCCCATCAACCCCCTTGCTGGAAA-TGTAAACATGTGTCCATCAAGCCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        35387 255 +    759272 ACTTTTTTAAACACTAGGCCCAATTTTATACCCAACTTCA-TTAATTTTACAAACATGTTtatgtaagtatgtatatatgtatg----ttatgtaatgtTTTAGACACTGAAAAATA-----ACTCATTTCTGCTATTATAAAACTGTTATCTTTAGATGTTCAGAAGCAACTCCCTAAAACTAGGTAGCAG-TAATGGAGCTATGTCTATCATTCTTTCCCATCAACCCCCTTGCTGGAAA-TGTAAACATGTGTCCATCAAGCCT
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1174892 251 +   1458659 A-TTTTTTAAACACTGGGCCCCATTTTATATCCTACTTCATTTAACTTTATGAACATGTTtat----gtatgtatgtatgtatg----ttatataatgtTTTAGACACTGAAAAATA-----ACTCATTTCTGCTCTTATAAAACTGTTATCTTTAGATGTTCAGAAGCAACTCCCTAAAAGGAGGTAGCAG-TAATGGAGCTATGTCTATCATTCTTTCCCATCAACCCCCTTGCTGGAGA-TGTAAACATGTGTTCATCAAATCT
i manLeu1.NW_012105520v1    C 0 C 0
s cebCap1.NW_016107979v1       745115 230 +   1024465 -AATTTTTAAAAACTAGGCCCGATTTTATATCCTACTTCATTTAACCTTATGAACATAT-----------------------------TTATGTAATATTTTAGACACTGAAAAATA-----ACTCATTTCTGCTATTATAAAACTGTTATCTTTAGATCTTCAGAAACAACATCCTAAAAGGAGGTAGCAA-TAACAGTGCTATGTCTATCATTCTTTCCCATCAACCCCCTTGTTGGATA-TGTGAACATTCATCCATCTAGCTT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530           29590034 230 +  36342412 ACCTTTTATAAAGTTAGGCCCAATTTTATATCCTAT-----TTAACTTTAAGAGCCTTT-----------------------------TTATATAATATTTTAGACACTAAAAAATAATTTGATTCATTTCTGCTATTTTAAAACTGGTGTCTTTAGATCTTTAGAGGCGACCTCCCAAAATGACACGGCAGTTAATGGCGCCGTATCTGTC--TCTTTCTCATTATCCCTC-TGCTGGAGAGTGGGAACATATGTCTGTATAGCTT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e chlSab2.chr26               7728529   0 +  58131712 I
e saiBol1.JH378276            2787823 556 +   3282555 M

a score=163719.000000
s hg38.chr15_KI270850v1_alt    269263 36 +    430880 TTAATTTTTACCTCTTATCTTCATGGCTCTCCATAT
s panTro5.chrY               25737050 36 -  26350515 TTAATTTTTACCTCTTATCTTCATGGCTCTCCATAT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       367827 36 +    378907 TTAATTTTTACCTCTTATCTTCATGGCTCTCCATAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18910562 36 - 121039945 TTAATTTTTACCTCTTATCTTCATGGCTCTCCATAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62683491 36 + 169600520 TTAATTTTTACATCTCATCTTTATGGCTCTCCATAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106624357 36 - 171882078 TTAATTTTTACATCTCATCTTTATGGCTCTCCATAC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        35642 36 +    759272 TTAATTTTTACATCTGATCTTTATGGCTCTCCATAC
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1175143 36 +   1458659 TTAATTTTTACCTCTTATCTTCATGGCTCTCCATAC
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2788379 36 +   3282555 TTAATTTTTACCTCTTACCTTCATGGCTCTCCATAC
i saiBol1.JH378276          M 556 C 0
s cebCap1.NW_016107979v1       745345 36 +   1024465 TTAATTTTTACCTCTTACCTTCATGGCTCTCCATAC
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530           29590264 36 +  36342412 TTAATTTTTATTTCTTACCTTCATGACTCTCCATGC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e chlSab2.chr26               7728529  0 +  58131712 I

a score=39092.000000
s hg38.chr15_KI270850v1_alt    269299 28 +    430880 AAAACT----TAACTCTTTTTTTTTtctattt--
s panTro5.chrY               25737086 27 -  26350515 AAAGCT----TAACTCTtttatttt-ctattt--
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       367863 26 +    378907 AAAACT----TAACTCTTTTTTTT--Ctattt--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18910598 25 - 121039945 AAAACT----TAACTCTTTTTTt---gtatct--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62683527 24 + 169600520 AAAACT----TAACCTTTTTTTT---GT-TTT--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106624393 24 - 171882078 AAAACT----TAACCTTTTTTTT---GT-TTT--
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        35678 25 +    759272 AAAACT----TAACCTTTTTTTT---Gtattt--
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1175179 24 +   1458659 AAACCT----TAA-CTCTTTTTt---gtactt--
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2788415 30 +   3282555 GAATCTTAACTAACTCTTTTATTt--gtgtgt--
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       745381 28 +   1024465 AAATCT----TAACTCTTTTATTT--GTGTGTGT
i cebCap1.NW_016107979v1    C 0 I 59
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873530           29590300  0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e chlSab2.chr26               7728529  0 +  58131712 I

a score=70412.000000
s hg38.chr15_KI270850v1_alt    269327 28 +    430880 gtatacgtatatttatatgtatatctat
s panTro5.chrY               25737113 28 -  26350515 gtatatgtatatttacatgtatatctat
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       367889 27 +    378907 gtatatgtata-ttatatgtatctctat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18910623 28 - 121039945 gtatatgtgtatttatatgtatatctat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62683551 28 + 169600520 Gtatatgtatatttatatgtatatctat
i rheMac8.chr7              C 0 I 210
s macFas5.chr7              106624417 28 - 171882078 Gtatatgtatatttatatgtatatctat
i macFas5.chr7              C 0 I 50
s cerAty1.NW_012003658v1        35703 28 +    759272 gtatatgtatatttatatgtatgtatat
i cerAty1.NW_012003658v1    C 0 I 24
s manLeu1.NW_012105520v1      1175203 28 +   1458659 gtatatgtatatttatatgtatatctat
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2788445 28 +   3282555 gtgtgtgtgtgtgtgtgtgtgtgtgtgt
i saiBol1.JH378276          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       745409 59 +   1024465 I
e otoGar3.GL873530           29590300  0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e chlSab2.chr26               7728529  0 +  58131712 I

a score=-3187.000000
s hg38.chr15_KI270850v1_alt    269355 3 +    430880 --------atc
s panTro5.chrY               25737141 3 -  26350515 --------atT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       367916 3 +    378907 --------atC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18910651 3 - 121039945 --------atc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106624495 3 - 171882078 --------aga
i macFas5.chr7              I 50 C 0
s cerAty1.NW_012003658v1        35755 3 +    759272 --------aga
i cerAty1.NW_012003658v1    I 24 C 0
s saiBol1.JH378276            2788473 9 +   3282555 gtgtgtgga--
i saiBol1.JH378276          C 0 I 4
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       745409 59 +   1024465 I
e otoGar3.GL873530           29590300 0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e manLeu1.NW_012105520v1      1175231 0 +   1458659 C
e chlSab2.chr26               7728529 0 +  58131712 I
e rheMac8.chr7               62683579 210 + 169600520 I

a score=361791.000000
s hg38.chr15_KI270850v1_alt    269358 131 +    430880 GAGAGAGAGA-----GAGagagaaaga------gtcttgctatgttgcccaggctgatctcaaactcctgggctcaagcaatcctcccaccttggcctcgcaaagtgctgggattacaggcgtgaaccactgtgcccagccT
s panTro5.chrY               25737144 131 -  26350515 GAGAGAGAGA-----GAGagagaaaga------gtcttgctatgttgcccagactgatctcaaactcctgggctcaagcaatcctcccaccttggcctcgcaaagtgctgggattacaggcatgaaccactgtgcccagccT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       367919 127 +    378907 ----GAGAGA-----GAGagagaaaga------gtcttgctatgttgcccaggctgatctcaaactcctgggctcaagcaatcctcccaccttggcctcgcaaagtgctgggattacaggcgtgaaccactgtgcccagccT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18910654 124 - 121039945 ------taGA-----GAGagagagaga------gtcttgctatgttgcccaggctgatctcaaactcctgggctcaagcaatcctcccaccttggccttg-aaactgctgggattacaagtgtgaatcactgtgcccagccT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106624498 136 - 171882078 gagagagagagTCTTGAGagagagaga------gtcttgctatgttgcccaggctgatctcaaactcctgggctcaagcaatcctcccaccttggcctcacaaagtgctgggattaaaggcgtgaaccactgtgcccagccT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        35758 131 +    759272 gagagagaga-----gagagagagaga------gtcctgctatattgctcaggctgatctcaaactcctggactcaagcaatccttccaccttggccttgcaaagtgctgggattacaggcatgaaccactgtgcccagccT
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1175231 130 +   1458659 -atctaGAGA-----GAGagagagaga------gtcttgctatgttgctcaggctgatctcaaactcctgggctcaagcaatcctcccatcttggcctcgaaaagtcctgggattacaggcatgaaccactgtgcgcagccT
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2788486 137 +   3282555 gagagagaga-----gagagagagagaCTGACTGActtgctacatttcccaggctgatctcaaactcctaggctcaagcacttctcccacttcagtctcccaaagtgctgggattacaggtgtgaaccactgcaaccagccT
i saiBol1.JH378276          I 4 C 0
s cebCap1.NW_016107979v1       745468 131 +   1024465 gagagagaga-----gagagagagaga------gacttgctacatttcccaggctgatctcaaactcccaggctcaagcacttctcccacttcagtctcccaaagtgctgggattacaggcgtgaaccactgcgaccagccT
i cebCap1.NW_016107979v1    I 59 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873530           29590300   0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e chlSab2.chr26               7728529   0 +  58131712 I
e rheMac8.chr7               62683579 210 + 169600520 I

a score=66168.000000
s hg38.chr15_KI270850v1_alt    269489 17 +    430880 CAGCCTTAACTCTTAAA
s panTro5.chrY               25737275 17 -  26350515 CAGCCTTAACTCTTAAA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       368046 17 +    378907 CAGCCTTAACTCTTAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18910778 17 - 121039945 CAGCCTTAACTCTTAAA
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106624634 17 - 171882078 CATCCTTAACTCTTAAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        35889 17 +    759272 CAGGCTTAACTCTTAAA
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1175361 17 +   1458659 CAGCCTTAACTCTTAAA
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2788623 17 +   3282555 CAGCCTTAACTCTTAAA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       745599 17 +   1024465 CAGCCTTAACTCTTAAA
i cebCap1.NW_016107979v1    C 0 I 323
s otoGar3.GL873530           29590300 17 +  36342412 CAGCCTTAACTCTTAAA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e chlSab2.chr26               7728529  0 +  58131712 I
e rheMac8.chr7               62683579 210 + 169600520 I

a score=17880.000000
s hg38.chr15_KI270850v1_alt    269506 7 +    430880 ATATCTT
s panTro5.chrY               25737292 7 -  26350515 ATATCTT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       368063 7 +    378907 ATATCTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18910795 7 - 121039945 ATATCTT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106624651 7 - 171882078 ATATCTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        35906 7 +    759272 ATATCTT
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1175378 7 +   1458659 ATATCAT
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2788640 7 +   3282555 GTGTCtt
i saiBol1.JH378276          C 0 I 292
s otoGar3.GL873530           29590317 7 +  36342412 ATATATT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       745616 323 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e chlSab2.chr26               7728529 0 +  58131712 I
e rheMac8.chr7               62683579 210 + 169600520 I

a score=22855.000000
s hg38.chr15_KI270850v1_alt    269513 14 +    430880 CAAACCAATATTCT
s panTro5.chrY               25737299 14 -  26350515 CAAACCAATATCCT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       368070 14 +    378907 CAAACCAATAGTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18910802 14 - 121039945 CAGACCGATGTTCT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106624658 14 - 171882078 CAGACTGATGTTCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        35913 14 +    759272 CAAACTGATGTTCT
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1175385 14 +   1458659 CCAACTGAAGTTCT
i manLeu1.NW_012105520v1    C 0 C 0
s otoGar3.GL873530           29590324 14 +  36342412 CAAATTGATGTCCT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       745616 323 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e chlSab2.chr26               7728529  0 +  58131712 I
e rheMac8.chr7               62683579 210 + 169600520 I
e saiBol1.JH378276            2788647 292 +   3282555 I

a score=65105.000000
s hg38.chr15_KI270850v1_alt    269527 26 +    430880 TCTGTTCTAATTTTTAAGAATAGATG
s panTro5.chrY               25737313 26 -  26350515 TCTGTTCTAAATTTTAATAATAGATG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       368084 26 +    378907 TCTGTTCTAATTTTTAAGAATAGATG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18910816 26 - 121039945 TCTGTTCTAATTTTTAAGAATAGATG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106624672 26 - 171882078 TCTGTTCTAATTTTTAAGAATAGATG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        35927 26 +    759272 TCTGTTCTAATTTTTAAGTATAGATG
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1175399 26 +   1458659 TCTCTTCTAATATTTAAGAATAGATG
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2788939 26 +   3282555 TCTGTTCTTACTTTTAAAACTAGATG
i saiBol1.JH378276          I 292 C 0
s otoGar3.GL873530           29590338 20 +  36342412 TCTGTTC------TTAAGAATAGATG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       745616 323 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e chlSab2.chr26               7728529  0 +  58131712 I
e rheMac8.chr7               62683579 210 + 169600520 I

a score=227266.000000
s hg38.chr15_KI270850v1_alt    269553 76 +    430880 TGTTTAAACCAA-CT--AACTTATTTTGACAAAAAT-TGGAGTTAAGAC-TCAGACTTCCTCAAAT----AGTTCTCCTAAAACC
s panTro5.chrY               25737339 78 -  26350515 TGTTTAAACCAA-CTGTAACTTATTTTGACAAAAAT-TGGAGTTAAGAC-TCAAACTTCCTCAAAT----AGTTATCCTAAAACC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       368110 78 +    378907 TGTTTAAACCAA-CTGTAACTTATTTTGACAAAAAT-TGGAGTTAAGAC-TCAGACTTCCTCAAAT----AGTTCTCCTAAAATC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18910842 82 - 121039945 TGTTTAAACCAA-TTACAACTTATTTTGACGAAAAT-TGAAGTTAAGAC-TCAAACTTCCTCAAATGGCCAGTTCTCCTAAAACT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              106624698 82 - 171882078 TGTTTAAACCAA-CTCTAACTTATTTTGACAAAAAC-TGGAGTTAAGAC-TCAAACTTCCTCAAATTGTCAGTTTTCCTAAAACC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        35953 82 +    759272 TGTTTAAACCAA-CTATAACTTATTTTGACAAAAAT-TGGAGTTAAGAC-TCAAACTTCCTCAGATGGTCAGTTCTCATAAAACT
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1175425 82 +   1458659 TGTTTAAACTAA-CTATAACTTATTTTGACAAAAAC-TGAAGTTAAGAC-TCAAACTTCCACAAATGGCCAGTTCTCCTAAAACT
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2788965 80 +   3282555 TGTTTAAACCAA-CTGCAACTTATTTTGACAAAAAT-CAGAGTT--GAC-TCAAACGTCCTCAAATGGTCGGTTCTCCTAAGACT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       745939 80 +   1024465 TGTTTAAACCAA-CTGCAACTTATTTTGACAAAAAT-CAGAGTT--GAC-TCAAAAATCCTCAAACGGTCGGTTCTCCTAAGACT
i cebCap1.NW_016107979v1    I 323 C 0
s otoGar3.GL873530           29590358 84 +  36342412 TGTTTAAAACAACCTATAACATATTTTGACAAAAATCTTGAGTTCAGACTTTTAACGTTCCCAAATGGCCAGTGCTCTCCAACT-
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e chlSab2.chr26               7728529  0 +  58131712 I
e rheMac8.chr7               62683579 210 + 169600520 I

a score=620627.000000
s hg38.chr15_KI270850v1_alt    269629 163 +    430880 ATTTACAGAATAATCTATCTTTTCAGTATTAAGTTAAAATACCACCTTTTCCTTA--------------------------------------------------------------------------------------------TACTAAATTCTCGTTTGCATGACTCTGGTTCTAAACTTCCATTGCCTTTATCTGTCTGGCCCAGGGATAGTCCACAA---------TATTTTATTTACTATCTGGTTGAAAGAGTCT
s panTro5.chrY               25737417 163 -  26350515 ATTTACAGAATAATCTCTCTTTTCAGTATTAAGTTAAAATACCACCTTTTCCTTA--------------------------------------------------------------------------------------------CAATAAATTCTCATTTGCATGACTCTGGCTCTAAACTTCCATTGCCTTTATCTGTCTGGCGCAGGGCTAGTTCACAA---------TATTTTATTTAATATCTGGTTGAAAGAGTCT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       368188 162 +    378907 ATTTACAGAATAATCTATCTTTTCAGTATTAAGTTAAAATACCACCTTTTCCTTA--------------------------------------------------------------------------------------------TACTAAATTCTCGTTTGCATGACTCTGGTTCTAAACTTCCATTGCCTTTATCTGTCTGGCCCAGGGATAGTCCACAA---------TATTTTA-TTACTATCTGGTTGAAAGAGTCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18910924 163 - 121039945 ATTTACAGAATAATCTGTCTTTTCACTATTAAGTTAAAATACCACCTTTTCCTTA--------------------------------------------------------------------------------------------TACTAAATTCTCATTTGCATGACTCTGGCTTTAAACTTCCATTGCCTTTATCTGTCTGACCCAGGGCTAGTCCACAA---------TATTTTATTTAATATCTGATTGAAAGAGTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62683789 163 + 169600520 ATTTACAGAATAATCTATCCTTTCACTGTTAAGTTAAAATACCACCTTTTCCTTA--------------------------------------------------------------------------------------------CACTAAATTCTCATTTGCATGACTCTGGTTCTAAACTTCCATTGCCTTTATCTGTCTGGCCCAGGGCTAGTCTACAA---------TATTTTATTTAATATCTGATTGAAAGAGTCT
i rheMac8.chr7              I 210 C 0
s macFas5.chr7              106624780 163 - 171882078 ATTTACAGAATAATCTATCTTTTCACTATTAAGTTAAAATACCACCTTTTCCTTA--------------------------------------------------------------------------------------------CACTAAATTCTCATTTGCATGACTCTGGTTCTAAACTTCCATTGCCTTTATCTGTCTGGCCCAGGGCTAGTCTACAA---------TATTTTATTTAATATCTGATTGAAAGAGTCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        36035 163 +    759272 ATTTACAGAACAATCTATCCTTTCACTGTTAAGTTAAAATACCACCTTTTCCTTA--------------------------------------------------------------------------------------------CACTAAATTCTCATTTGCATGACTCTGGTTCTAAACTTCCATTGCCTTTATCTGTCTGGCCCAGGGCTAGTCTACAA---------TATTTTATTTAATATCTGATTGAAAGAGTCT
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1175507 163 +   1458659 ATTAACAGAATAATCTATCTTTTCACTATGAAGGTAAAATACCACCTTTTCCTTA--------------------------------------------------------------------------------------------TATTAAATTCTCATTTGCATGACTCTGGTTCTAAACTTCCATTGCCTTTATCTGTCTGGCCCAGGGCTAGTCTACAA---------TATTTTATTTAATATCTAGTTGAAAGAGTCT
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2789045 159 +   3282555 ATTTACAGAATAATCTATCCTTTTCTTATTAAGTTAAAATACCACCTTTACCTTA--------------------------------------------------------------------------------------------TACTAAATTCTCATTTGCATGACTCTGTTTCTAAATTTTCATTGCCTGTATATGTCTGGGCCAGG----GTACGCAA---------CATTTTATTTAACACCTGGTTGAACAAGTCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       746019 159 +   1024465 ATTTATAGAATAATCTATCCTTTTCTTATTAAGTTAAAATACCACCTTTACCTTA--------------------------------------------------------------------------------------------TACTAAATTCTCATTTGCATGACTCTGTTTCTAAATTTTCATTGCCTGTATATGTCTGGGCCAGG----GTACACAA---------CATTTTATTTAACACCTGGTTGAACAAGTCT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530           29590442 259 +  36342412 ATTTACGGAATAATCTATTCTT----TATTGAATTAAAATACC-CCTTTACTTTATTCtaaatcagtggttctcaaccttcctaatgccagaaccctttaatacagttcctgtgggtcgcaacccacaggttgagtgagaaccgctgttCTAAATTCTCATTTGCATGACTCTAGTTCTAAACTTCTATTGCCTTTATTGGTCTGGTGCAGGACGAGTACATAAGTTTTCCTTTttttttttttttttttttttgagaccgtct
i otoGar3.GL873530          C 0 I 252
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e chlSab2.chr26               7728529   0 +  58131712 I

a score=313247.000000
s hg38.chr15_KI270850v1_alt    269792 98 +    430880 ATACTTTATTACTTTTTATTACTTATTCTTCTAAACAAATTTTAGAGTCG-TTTTGTCAAGTGTCAAAAATAAATCTGCCAGAATTTGTACTGAAATTT
s panTro5.chrY               25737580 99 -  26350515 ATACTTTATTAATTTTTATTATTTATTCTTCTAAACTAACTTTAGAGTCGTTTTTGTCAAGTGTCAAAAATAAATCTCCTGGAATTTGTACTGAAATTT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       368350 98 +    378907 ATACTTTATTAATTATTATTGTTTATTCTTCTAAACAAATTTTAGAGTCG-TTTTGTCAAGTGTCAAAAATAAATCTGCCAGAATTTGTACTGAAATTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18911087 95 - 121039945 ATActttattattttttattatttactcttctaa---aattttagagtca-ttttggcaagtgccaaaaataaatctgctggaatttctactgagattT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62683952 93 + 169600520 ATActttattattttttattatttactcttctaaacaaactttagagtca-ttttgtcaagtgccaaaaataaatctgctggaatttGT-----AAATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106624943 93 - 171882078 ATACTTTATTATTTTTTATTAtttactcttctaaacaaactttagagtca-ttttgtcaagtgccaaaaataaatctgctggaatttGT-----AAATT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        36198 98 +    759272 ATActttattattttttattatttactcttctaaacaaactttagagtca-ttttgtcaagtgccaaaaataaatctgctggaatttgtactgaaattT
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1175670 98 +   1458659 ATActtgattattttttattatttactcttctaaacaaattttagaattg-ttttgtcaagtgccaaaaataaatctgctggaatttgtactgaaattT
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2789204 98 +   3282555 ATtctttattattttttattatttatttttttaaacaaacgttcaagtca-ctttgtcaagttccagaaataaatctgctaggctttgtactgaaattt
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       746178 98 +   1024465 ATtctttattattttttattatttactcttttaaacaaacgttcgagtca-ctttgtcaagttccagaaataaatctgctaggctttgtgctgaaattt
i cebCap1.NW_016107979v1    C 0 I 1046
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873530           29590701 252 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e chlSab2.chr26               7728529  0 +  58131712 I

a score=5459.000000
s hg38.chr15_KI270850v1_alt    269890 24 +    430880 GTGTGTGTGTGtata-----tatatataa
s panTro5.chrY               25737679 29 -  26350515 GTGtatatgtatatacacactatatataa
i panTro5.chrY              C 0 I 30
s gorGor5.CYUI01015946v1       368448 23 +    378907 GTGTGTGTGTGtata-----tatatata-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18911182 13 - 121039945 Gtatatatacaca----------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62684045 17 + 169600520 GTGtatgtgtatata-----ta-------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106625036 17 - 171882078 GTGTGTGtatatata-----ta-------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        36296 24 +    759272 Gtaaatatatatata-----tatgtaaat
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1175768 24 +   1458659 Gtatgtatgtatata-----tatatatat
i manLeu1.NW_012105520v1    C 0 I 1
s saiBol1.JH378276            2789302  2 +   3282555 ----------at-----------------
i saiBol1.JH378276          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       746276 1046 +   1024465 I
e otoGar3.GL873530           29590701 252 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e chlSab2.chr26               7728529  0 +  58131712 I

a score=3311.000000
s hg38.chr15_KI270850v1_alt    269914 9 +    430880 tacacacac
s gorGor5.CYUI01015946v1       368471 2 +    378907 ta-------
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62684062 9 + 169600520 tgtatacac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106625053 9 - 171882078 tatacacac
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        36320 9 +    759272 tgtatatac
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1175793 9 +   1458659 tacacacac
i manLeu1.NW_012105520v1    I 1 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       746276 1046 +   1024465 I
e otoGar3.GL873530           29590701 252 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e chlSab2.chr26               7728529 0 +  58131712 I
e nomLeu3.chr6               18911195 0 - 121039945 C
e saiBol1.JH378276            2789304 0 +   3282555 C
e panTro5.chrY               25737708 30 -  26350515 I

a score=-1373.000000
s hg38.chr15_KI270850v1_alt    269923 3 +    430880 act
s panTro5.chrY               25737738 3 -  26350515 agt
i panTro5.chrY              I 30 C 0
s gorGor5.CYUI01015946v1       368473 3 +    378907 act
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7               62684071 3 + 169600520 act
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106625062 2 - 171882078 ac-
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        36329 3 +    759272 att
i cerAty1.NW_012003658v1    C 0 I 65
s manLeu1.NW_012105520v1      1175802 2 +   1458659 ac-
i manLeu1.NW_012105520v1    C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       746276 1046 +   1024465 I
e otoGar3.GL873530           29590701 252 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e chlSab2.chr26               7728529 0 +  58131712 I
e nomLeu3.chr6               18911195 0 - 121039945 C
e saiBol1.JH378276            2789304 0 +   3282555 C

a score=21712.000000
s hg38.chr15_KI270850v1_alt    269926 71 +    430880 atatataaaatataaaatgtatatatacaatttatatatataaatatttataaaatatgaaatatatatat
s panTro5.chrY               25737741 71 -  26350515 atatatataatacgaaatgtatatatacaatttatatataaatatatatataaaatgtgaaatgtatatac
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       368476 65 +    378907 atatataaaatataaaatgtatatatacaatttatat------atatttataaaatatgaaatatatatat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18911195 54 - 121039945 ------tacatacaaaatttatatatataaat-----------atatatataaaatataaaatgtgtatat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62684074 44 + 169600520 --------------atatatatatatatga-------------atagatataaaatataaaaaatatatat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106625064 43 - 171882078 ---------------aatatatatatatga-------------atagatataaaatataaaaaatatatat
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1      1175804 30 +   1458659 ----------------acaca-aaatgtgt-------------atatatataaa-----------atatat
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2789304  7 +   3282555 ----------------------------------------------------------------tttacat
i saiBol1.JH378276          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       746276 1046 +   1024465 I
e otoGar3.GL873530           29590701 252 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e chlSab2.chr26               7728529  0 +  58131712 I
e cerAty1.NW_012003658v1        36332 65 +    759272 I

a score=6043.000000
s hg38.chr15_KI270850v1_alt    269997 4 +    430880 ataC
s panTro5.chrY               25737812 4 -  26350515 atac
i panTro5.chrY              C 0 I 30
s gorGor5.CYUI01015946v1       368541 4 +    378907 ataC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18911249 4 - 121039945 ataC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62684118 4 + 169600520 aCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106625107 4 - 171882078 aCAC
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1      1175834 4 +   1458659 aCAC
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2789311 3 +   3282555 ata-
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530           29590953 4 +  36342412 GTAC
i otoGar3.GL873530          I 252 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       746276 1046 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e chlSab2.chr26               7728529 0 +  58131712 I
e cerAty1.NW_012003658v1        36332 65 +    759272 I

a score=-6814.000000
s hg38.chr15_KI270850v1_alt    270001 20 +    430880 ACACACACTTTTCTAGTTTt
s gorGor5.CYUI01015946v1       368545 18 +    378907 ACACACACTTTTCTAG--Tt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18911253 18 - 121039945 --ACACGCttttttttcttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62684122  8 + 169600520 ACACACAC------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106625111  8 - 171882078 ACACACAC------------
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1      1175838 20 +   1458659 ACTTTTTTTTTCTCTCTCTT
i manLeu1.NW_012105520v1    C 0 I 2
s saiBol1.JH378276            2789314  7 +   3282555 -------------tggtttt
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530           29590957 20 +  36342412 ACATCTGCTTGAGCAAGTCT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       746276 1046 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e chlSab2.chr26               7728529  0 +  58131712 I
e cerAty1.NW_012003658v1        36332 65 +    759272 I
e panTro5.chrY               25737816 30 -  26350515 I

a score=2036.000000
s hg38.chr15_KI270850v1_alt    270021 3 +    430880 ttt
s gorGor5.CYUI01015946v1       368563 3 +    378907 tgt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18911271 3 - 121039945 tct
i nomLeu3.chr6              C 0 I 4
s macFas5.chr7              106625119 1 - 171882078 --t
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        36397 3 +    759272 ctt
i cerAty1.NW_012003658v1    I 65 C 0
s manLeu1.NW_012105520v1      1175860 3 +   1458659 ttt
i manLeu1.NW_012105520v1    I 2 C 0
s saiBol1.JH378276            2789321 2 +   3282555 -tt
i saiBol1.JH378276          C 0 I 3
s otoGar3.GL873530           29590977 3 +  36342412 CTT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       746276 1046 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e chlSab2.chr26               7728529 0 +  58131712 I
e rheMac8.chr7               62684130 0 + 169600520 C
e panTro5.chrY               25737816 30 -  26350515 I

a score=443712.000000
s hg38.chr15_KI270850v1_alt    270024 150 +    430880 -tttttttt---tttttttt-----gagacagggtctcactctgtcacctaggctggagttcagaggcatgatctcggctcactgcaacctctgcctcccaggctcaagtgctcctcccacctcagcctcagaagtagttggaaatacaagtgtgtgcc
s panTro5.chrY               25737846 149 -  26350515 -Cttttttt---tttttttt-----gagacagggtctcactctgtcacctaggctggagttcagaggcatgatcttggctcactgcaacctctgcctcccaggctcaagtgatcc-cccacctcagcctcataagtatttggaactacaagtgtgtgcc
i panTro5.chrY              I 30 C 0
s gorGor5.CYUI01015946v1       368566 150 +    378907 -tttttttt---tttttttt-----gagacagggtctcactctgtcacctaggctggagttcagaggcatgatctcagctcactgcaacctctgcctcccaggctcaagtgctcctcccacctcagcctcagaagtagttggaaatacaagtgtgtgcc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18911278 150 - 121039945 -tttttttt---tttttttt-----gagacagggtcttactctgtcacctaggctggagttcagaggaatgatctcggctcactgcaacctctgcctcccaggctcaagggatcctcccgccttagcctcaggagtggttggaactacaagtgtgtgcc
i nomLeu3.chr6              I 4 C 0
s rheMac8.chr7               62684130 149 + 169600520 --ttttttt---tttttttt-----gagacaggatctcactctgtcatgtaggctggagttcagaggcatgatcttggctcactgcaacctctgccttccaggctcaagtgatcctcctgcctcaacctcaggagtagttggaactacaggtgtgtgcc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106625120 150 - 171882078 -tttttttt---tttttttt-----gagacaggatctcactctgtcatgtaggctggagttcagaggcatgatctcggctcactgcaacctctgccttccaggctcaagagatcctcctgcctcaacctcaggagtagttggaactacaggtgtgtgcc
i macFas5.chr7              C 0 I 7673
s cerAty1.NW_012003658v1        36400 150 +    759272 -tttttctt---tttttttt-----gagacagggtctcactctgtcatgtaggctggagttcagaggcatgatctcggctcactgcaacctctgccttccaggctcaagtgatcctcctgcctcaacctcaggagtagttggaactacaggtgtgtgcc
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1175863 124 +   1458659 -tttttttt---tttttttg-----gagacacgatctcactctgtca--------------------------cttagctcactgcaacctctgcctcccaggttcatgtgatcctcctgcctcagcctcaggagtagttggaactacaagtgtgtgcc
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2789326 150 +   3282555 -ttttgggg---tttttttt-----gagacaaggtctcactctgtcacctaggctggagttcagaggcacaatctagacttagtgcaagctctgcctcccaggctcaagtgatcctcaaacctcagcctcctgagtagctggcattacaaatatgtgcc
i saiBol1.JH378276          I 3 C 0
s otoGar3.GL873530           29590980 156 +  36342412 ACtttttttaaactttttttggggggagacagagtgtcactttgttgccctcagtagagtgccatggtgt---cttagctcatagcaacctccaactcttagactcaagcaatcctcttgcctcagcctccaaagtagctaggactataggtacccacc
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       746276 1046 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e chlSab2.chr26               7728529   0 +  58131712 I

a score=1432477.000000
s hg38.chr15_KI270850v1_alt    270174 489 +    430880 acagacacccagctaatt-----------------------------------------------------------------------------------gtcatctacccgcctcagcttcccaaactgtttggattacaggtatgagccactgtgcccag------------------------------------------------------------cAGAAATTA-----------------------------CATTTACAAATTAATATGAAGACAtggtgataactaacatatttataacatgaaatctgctcatccaggaacatagaatgcaaatctttcattccactcagcaaaattttgtcctgtccttgataaaagtcctgcacatc-taagtttattcctaggcatttaatttttgctgaaat---------acctg-aaaaaatac-ttcatcactatatcttctatgtgattatagctaacattggggaaggctattgatttttatataaaagaacttttaaccagtaatcttaaaaattgttttttctcagttggttcctttgga----tatttttag-gtaaacaatcatgtcaactgaaaataatga---ttattttTCTATAAAGAC--TATGACATCACAGGAAAATACAGTAA----ATACTTT
s panTro5.chrY               25737995 491 -  26350515 acagacacccaactaatt-----------------------------------------------------------------------------------gtcatctacctgcctcagctttccaaacttttgggattacaggtatgagccacggtgcccag------------------------------------------------------------cAGAAATTA-----------------------------CATTTACAAATTAATATGAAGACAtggtgataactaacatatttataacatgaaatctgctcatccaggaacatagaatgcaaatctttcattccactcagcaaaattttgtcatgtccttgataaaagtcctgcacatc-taagtttattcctaggtatttaatttttgctgaaat---------acctg-aaaaaatac-ttcatcactgtatcttctatgtgattataaataacatttaggaaggctattgatttttatataaaagagcttttaaccagtaatcttaaaaattgtttttt-tcagttggttcctttgga----tatttttag-gtaaacaatcatgtaaactgaaaataattattgttatttttctATATAGAC--TATGACATCATGGGAAAATACAGTCG----ATACTTT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       368716 488 +    378907 acagacacccagctaatt-----------------------------------------------------------------------------------gtcatctacccgcctctgcttcccaaactgtttggattacaggtatgagccactgtgcccag------------------------------------------------------------cAGAAATTA-----------------------------CATTTACAAATTAATATGAAGACAtggtgataactcacatatttataacatgaaatctgctcatccaggaacatagaatgcaaatctttcattccactcagcaaaattttgtcctgtccttgataaaagtcctgcacatc-taagtttattcctaggtatttaattttttctgaaat---------acctg-aaaaaatac-ttcatcactatatcttctatgtgattatagctaacattggggaaggctattgatttttatataaaagaacttttaaccagtaatcttaaaaattgtttttc-tcagttggttcctttgga----tatttttag-gtaaacaatcatgtcaactgaaaataatga---ttatttttctataaagac--tatgacatcacaggaaaatacagtaa----atacttt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18911428 484 - 121039945 acagacacccagttaatt-----------------------------------------------------------------------------------gtcatctaccctcctcagcttcccaaactcttcggataacacgtatgagccaccgtgcccag------------------------------------------------------------cAGAAATTA-----------------------------CATTTATAA---AATATGAAGACAtggtgataactaacgtatttataacatgaaatctgctcatccaggaacatagaatgcaaatctttcattcctctcagcaaaattttgtcatgtccttgataaaagtcctgcacatc-taagtttattcctaggtatttaatttttgctgaaat---------acctg-aaaaaatac-ttcatcattatatcttctatgtgattatagctaacattggggaaggctattgatttttatataaaagaacttttaaccagtaatcttaaaaa---tttttt-tcagttggttcc-ttggc----tatttttag-gtaaacaatcacgtcaactgaaaataatgattgttatttttctATAAAGAC--TATGACATCATGGGAAAATACAGTAA----ATACTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62684279 491 + 169600520 acagacacccagctaatt-----------------------------------------------------------------------------------gtcatctactcacctcagcttcccaaactttcgggattacaggtatgagccactgtgcccag------------------------------------------------------------cAGAAatta-----------------------------catttataaattaatatgaagacatgttgataactaacatatttataacatgaaatctgctcatccaggaacatagaatgcaaatctttcattccactcagcaaaattttgtcatgtccttgataaaagtcctgcacatc-taagtttattcctagatatttaatttttgctgaaat---------acatg-aaaaaatac-ttcatcactatatcttctaagtgattatagccaacattggggaaggctaatgatttttatataaaagagcttttaaccagtaatcttaaatattgtttttt-tcagttagttcctttgga----tatttttag-gtaaacaatcacatcaactgaaaataatgattgttatttttctATAAGGAC--TATGACATCATGGGAAAATACAGTAA----ATACTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106632943 491 - 171882078 ACAGACACCCAGCTAAtt-----------------------------------------------------------------------------------gtcatctactcacctcagcttcccaaactttcgggattacaggtatgagccactgtgcccag------------------------------------------------------------cAGAAatta-----------------------------catttataaattaatatgaagacatgttgataactaacatatttataacatgaaatctgctcatccaggaacatagaatgcaaatctttcattccactcagcaaaattttgtcatgtccttgataaaagtcctgcacatc-taagtttattcctagatatttaatttttgctgaaat---------acatg-aaaaaatac-ttcatcactatatcttctaagtgattatagccaacattggggaaggctaatgatttttatataaaagagcttttaaccagtaatcttaaatattgtttttt-tcagttagttcctttgga----tatttttag-gtaaacaatcacgtcaactgaaaataatgattgttatttttcttTAAAGAC--TATGACATCATGGGAAAATACAGTAA----ATACTTC
i macFas5.chr7              I 7673 C 0
s cerAty1.NW_012003658v1        36550 441 +    759272 acagacacccagctaatt-----------------------------------------------------------------------------------gtcatctactcacctcagcttcccaaacttttggggttacaggtatgagccactgtgcccaa------------------------------------------------------------cAGAAATTA-----------------------------CATTTATAAATTAATATGAAGA--------------------------------------------------ATAGAATGCAAAtctttcattccactcagcaaaattttgtcatgtccttgataaaagtcctgcacatc-taagtttattcctagatatttaatttttgctgaaat---------acatg-aaaaaatac-ttcatcactatatcttctatgtgattatacccaacattggggaaggctgatgatttttatataaaagagcttttaaccagtaatcttaaaaattgtttttt-tcagttggttcctttgga----tatttttag-gtaaacaatcacgtcaactgaaaataatgattgttatttttctATAAAGAC--TATGACATCATGGGAAAATACAGTAA----ATACTTC
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1175987 498 +   1458659 acagacacgcagctaatt-----------------------------------------------------------------------------------gtcatctactcacctcagcttcccaaacttttgggattacaggtatgagccactgtgcccag------------------------------------------------------------cAGAAATTA-----------------------------CATTTATAAATTAATATGAAGACAtggtgataactaacatatttatagcatgaaatctgctcatccaggaacatagaatgcaaatctttcatttcactcagcaaaattttgtcatgtccttgataaaagtcctgcacatc-taagtttattcctagatatttaatttttgctgaaacacctgaaaaacctg-aaaaaatac-tgcaccactatatcttctatgtgattatagctagcattggggaaggatattgatttttatat-aaagagcttttagccactaatcttaaaaattg-ttttt-tcagttggttcctttgga----tattttcag-gtaaacaatcatgtcaactaaaaataatgattgttatttttATATAAAGAC--TATGACATCATGAGGAAATACAGTAA----ATACTTT
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2789476 569 +   3282555 acc-acacccatctcatttttttttttttttatttttttttttttttttgacacagggtttcaccatgttgcccagactggtcttgaactcatgagctcaagtgacctgcccacctcagcttcccaaagttatggaattacaggcatgagccactgcgcccag------------------------------------------------------------cagaaatta-----------------------------cagtt---tatgaatataaagacatcgtgataactgatatatttatattattaaatctgctcatccaggaacatagaatgcaaatctttcattccactcagcaaaa--tcatcctgttcttgacaaaagtcctgcacatcttaagtttattcctaggtatgtaatttttgttaaaat---------acttgaaaaaaatac-tttatccctatatcttctgtgtgattatagctaaaattgtggaatgcttctgatttttatgt-taacagcttttaactggtaatcttaagaactttttttt-tgagttggttcctctgaa----tatttttag-gtaaacaatcatgtcagctgaaaataatgatggttatttttctATAAAGAC--TTTGTTATCATGGGAAAATACAGTAA----ttttttt
i saiBol1.JH378276          C 0 I 314
s otoGar3.GL873530           29591136 615 +  36342412 aca-acgcccagctattt------------------------------ttagagacaaagtctcactctggctcaggctggtttcaaacttctgagctcaggcaatccatctgctgaggcctcccagagtgctaggattacaggcatgaactactgtgcccagccTTTTCCATTTTATTTTTTATTTACTCTTTTAAGCaaattttagagtcatttcgagttccaaaaataagtctggtggaatttgtactagaattgcactatttataaattaatatgaagacatgaagataactgatatgtt--taatatggagttcgcccatctcggaacacagtattcaagtctttcattccacttagaaaattttcatagttttcctgatataaacccagcacatc-------tATTTCTGGCT-----ATTTTTATTGTGAC---------TGTCA-ATAAAATACTTTTATCACTATATCATC----TGATTATAGCTGAAATTTGGGAAAACTGCTGATTCGTATATAACAGAGCTTTTA-CAAGTCATCTTCA-------CTTTT-TCAGTTGGTTCCTTGGGATTTTTCTTTTTAGTATGAACAATCATGTCACCTGGaaataattattttaattttttGACAGGACCTTTGTGACAT----GGGAAATACAATAATGTTAAATTTC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       746276 1046 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e chlSab2.chr26               7728529   0 +  58131712 I

a score=27120.000000
s hg38.chr15_KI270850v1_alt    270663 9 +    430880 TTAAAAGAA
s panTro5.chrY               25738486 9 -  26350515 TTAAAagaa
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       369204 9 +    378907 ttaaaagaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18911912 9 - 121039945 TTAAAAGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62684770 9 + 169600520 TTAAAAGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106633434 9 - 171882078 TTAAAagaa
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        36991 9 +    759272 TTAAAAGAA
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1176485 9 +   1458659 TTAAAAGAA
i manLeu1.NW_012105520v1    C 0 C 0
s otoGar3.GL873530           29591751 9 +  36342412 TTAAGATAA
i otoGar3.GL873530          C 0 I 5240
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       746276 1046 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e chlSab2.chr26               7728529 0 +  58131712 I
e saiBol1.JH378276            2790045 314 +   3282555 I

a score=291357.000000
s hg38.chr15_KI270850v1_alt    270672 133 +    430880 TATAAAAGggccaggcacagtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagaccatgaggtcaggagatcgagaccatcctggctaacacggtggaaccccatctctactaaaaaat
s panTro5.chrY               25738495 133 -  26350515 tataaaagggctgggcacactggctcacgcctgtaatcccaacactttgggaggctgaggcgggaggatcacgaggtcaggagattgagaccatcgtggctaacatggtgaaaccccatctctactaaaaaat
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       369213 133 +    378907 tataaaagggccaggcacagtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagaccatgaggtcaggagatccagaccatcctggctaacacggtgaaaccccatctctactaaaaaat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18911921 133 - 121039945 TATAAGACAgccaggcgcagtggctcacacctgtaatcccagcattttggaaggccagggtgggcggatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccacctctactaaaaaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62684779 132 + 169600520 TATAAAAGggccgggtgcagtggctca-gcctatgatcccagcactttgggaggccgaggcgggcagatcacgaggtcaggaggtcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaaat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106633443 132 - 171882078 tataaaagggccgggtgcagtggctca-gcctatgatgccagcactttgggaggccgaggcgggcagatcacgaggtcaggaggtcgagaccatcctggctaacatggtgaaaccccgtctctattaaaaaat
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        37000 133 +    759272 TATAAAAGggccgggtgcagtggctcatgcctatgatcccaggactttgggaggccgaggcgggcagatcacgaggtcaggaggtcgagaccatcctggctaacatggtgaaaccccgtctgtattaaaaaat
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1176494 133 +   1458659 TATAAAAGggccgggcacagtggctgacacctgtaatcccagcactttgggaggccgaggcaggcagaacatgagatcaggagatcgagaccatcctgactaaaatggtgaaccctcatctctactaaaaaat
i manLeu1.NW_012105520v1    C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       746276 1046 +   1024465 I
e otoGar3.GL873530           29591760 5240 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e chlSab2.chr26               7728529   0 +  58131712 I
e saiBol1.JH378276            2790045 314 +   3282555 I

a score=415646.000000
s hg38.chr15_KI270850v1_alt    270805 161 +    430880 acaaaaaattagccgggaatggtggcgggcgcctgtagtcccagctactggggaggctgaggcaggagaatggtgggaacccaggaggtggagcttgcagtgagccgagaccacggcactgcactccagcctgggtgacagagcaagactctgtctcaaaa
s panTro5.chrY               25738628 161 -  26350515 ataaaaaattagccaggcatggtggtgggcacctgtagtcccagctactggggaggctgaggcagtagaatggtgtgaacctgggagggggagcctgcagtgagccgagattatgccactgcactccagtctgggtgacagagcaagactctgtctcaaaa
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       369346 161 +    378907 acaaaaaattagccgggaatggtggcgggcgcctgtagtcccagctactggggaggctgaggcaggagaatggtgggaacccaggaggtggagcttccagtgagccgagatcgcggcactgcactccagcctgggtgacagaccgagactctgtctcaaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18912054 161 - 121039945 acagaaagttatccgggcatggtggcgggcgcctgtagtcccagctactggggaggctgaggcaggagaatggtgtgaacccaggaggtggagcttgcagtgagctgagatcatgccactgcactccagcctgggtgacagagagagactctgtctcaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62684911 161 + 169600520 acaaaaaattagccgggtatggtggtgggcacctgcagtcccagctactggggaggctgaggcaggagaatggtgtgaacccaggaggtggagcttgcagtgagtccagattgcaccactgcactccagccttggcaacagagcaagactccatctcgaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106633575 161 - 171882078 acaaaaaattagccgagtatggtggtgggcacctgcagtcccagctactggggaggctgaggcaggagaatggtgtgaacccaggaggtggagcttgcagtgagtccagattgcaccactgcactccagccttggcaacagagcaagactccatctcgaaa
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        37133 161 +    759272 acaaaaaattagccgggtatggtggtgggcacctgcagtcccagctactggggaggctgaggtaggagaatggtgtgaacccaggaggtggagcttgcagtgagtccagattgcaccactgcactccagccttggcaacagagcaagactccatctcgaaa
i cerAty1.NW_012003658v1    C 0 C 0
s manLeu1.NW_012105520v1      1176627 160 +   1458659 ac-aaaaattagctgggcatggtggtgggcacctgtagtcccagctactggggaggctgaggcaggagaatgatgtgaacccgggaggcggagcttgtagtgagcgcagatcatgccactgcactccagcctgggcaacagagcaagacttcgtcttaaaa
i manLeu1.NW_012105520v1    C 0 n 0
s otoGar3.GL873530           29597000 155 +  36342412 acaaaaaaatagctgggtgttgtggcaggtacctgtagtcccacctacttgggaggctgtggcaagagtatcacttaagcccaagagtttgaggttgctgtgaactgtga---caccacagcactctaccaagggcaacaa---gagactctgtctcaaaa
i otoGar3.GL873530          I 5240 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       746276 1046 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e chlSab2.chr26               7728529   0 +  58131712 I
e saiBol1.JH378276            2790045 314 +   3282555 I

a score=-1833.000000
s hg38.chr15_KI270850v1_alt    270966 18 +    430880 ------aaaaaaaaa-aaaaaaaaa
s panTro5.chrY               25738789 17 -  26350515 ------aaaaaaaaa-agagaaga-
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       369507 18 +    378907 ------aaaaaaaaa-aaaaaaaaa
i gorGor5.CYUI01015946v1    C 0 I 5
s nomLeu3.chr6               18912215 13 - 121039945 ------aaaaaaaaa-agaa-----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62685072  9 + 169600520 ---------aaaaaa-ata------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106633736 10 - 171882078 ---------aaaaaatata------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        37294  6 +    759272 ---------aaaaaa----------
i cerAty1.NW_012003658v1    C 0 C 0
s otoGar3.GL873530           29597155 23 +  36342412 aaaaagaagaagaaa-aAAAAGAA-
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       746276 1046 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e manLeu1.NW_012105520v1      1176787  0 +   1458659 I
e chlSab2.chr26               7728529  0 +  58131712 I
e saiBol1.JH378276            2790045 314 +   3282555 I

a score=6957.000000
s hg38.chr15_KI270850v1_alt    270984 17 +    430880 tatatatatatatatat
s rheMac8.chr7               62685081 17 + 169600520 tatatatatatatatat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106633746 17 - 171882078 tatatatatatatatat
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        37300  9 +    759272 --------TATATATAT
i cerAty1.NW_012003658v1    C 0 C 0
s otoGar3.GL873530           29597178 17 +  36342412 TACGAAGAtgttgacat
i otoGar3.GL873530          C 0 I 663
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       746276 1046 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e manLeu1.NW_012105520v1      1176787  0 +   1458659 I
e chlSab2.chr26               7728529  0 +  58131712 I
e nomLeu3.chr6               18912228  0 - 121039945 C
e saiBol1.JH378276            2790045 314 +   3282555 I
e gorGor5.CYUI01015946v1       369525  5 +    378907 I
e panTro5.chrY               25738806  0 -  26350515 C

a score=1092.000000
s hg38.chr15_KI270850v1_alt    271001 2 +    430880 at
s rheMac8.chr7               62685098 2 + 169600520 at
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106633763 2 - 171882078 at
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        37309 2 +    759272 AT
i cerAty1.NW_012003658v1    C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       746276 1046 +   1024465 I
e otoGar3.GL873530           29597195 663 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e manLeu1.NW_012105520v1      1176787 0 +   1458659 I
e chlSab2.chr26               7728529 0 +  58131712 I
e nomLeu3.chr6               18912228 0 - 121039945 C
e saiBol1.JH378276            2790045 314 +   3282555 I
e gorGor5.CYUI01015946v1       369525 5 +    378907 I
e panTro5.chrY               25738806 0 -  26350515 C

a score=26832.000000
s hg38.chr15_KI270850v1_alt    271003 11 +    430880 atataaaacta
s panTro5.chrY               25738806 11 -  26350515 atataaaacta
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       369530 11 +    378907 atataaaacta
i gorGor5.CYUI01015946v1    I 5 C 0
s nomLeu3.chr6               18912228 10 - 121039945 -tataaaacta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62685100 11 + 169600520 atataAAACTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106633765 11 - 171882078 atTAAAAActt
i macFas5.chr7              C 0 I 4107
s cerAty1.NW_012003658v1        37311 11 +    759272 ATAAAAAACTT
i cerAty1.NW_012003658v1    C 0 C 0
s saiBol1.JH378276            2790359 11 +   3282555 atataaaacta
i saiBol1.JH378276          I 314 C 0
s cebCap1.NW_016107979v1       747322 11 +   1024465 atataaaacta
i cebCap1.NW_016107979v1    I 1046 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873530           29597195 663 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e manLeu1.NW_012105520v1      1176787  0 +   1458659 I
e chlSab2.chr26               7728529  0 +  58131712 I

a score=499112.000000
s hg38.chr15_KI270850v1_alt    271014 215 +    430880 tagagaatatgacctcaacta-ttaagcatatgtgtaagggt-tatgtattttaatagcaaag-aa-aaaatatatactggtagaaaatgaccatcatgtcaacagtcaatagtggttatattagatagagaaattatgggagactttaa-tttttttcttttatcttttctgtactttaccaa---ttttctcaacaat--------------ggttgcttatgagttttaaaatt
s panTro5.chrY               25738817 215 -  26350515 tagagaatacgacctcaactatttaaacatatgtataagggt-tatgtattttactagcaaag-aa-aaaatatatactggtagaaaatggccatcatgtcaactgtcaatagtggttatattaggtagagaaattatgggagactaatt-tttttttctttttgcttttctgtactttactaa---ttttctcaacaat--------------ggttgcttgtgagttttataa-t
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       369541 215 +    378907 tagggaatatgacctcaactatttaaacatatgtgtaagggt-tatgtattttaatagcaaag-aa-aaaatatatactggtagaaaatggccatcatgtcaacagtcaatagtggttatattagatagagaaattatgggagactttaa--ttttttcttttatcttttctgtactttaccaa---ttttctcaacaat--------------ggttgcttatgagttttataatt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18912238 215 - 121039945 tagagaatatgacctcaactatttaaacacatgtataagggt-tatgcattttactagcaaag-aa-aaaatatacactggtagaaaatggccatcaggtcaactgtc-atagtggttatattaggtagagaaattatgggagactttaa-tttttttcttttctcttttctgtactttactaa---ttttctcaacaat--------------ggttgcttatgagttttataatt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62685111 229 + 169600520 TAGAGaatatgacctcaactatggaaacatatgtgtaagggt-tatgtattttactagcaaag-aa-aaaatatatactggtagaaaatggccatgatgtcaactgtcaatagtggttatattaagtagagaaattatgggagacttgaa--ttttttcttttttcttttctgtactttactaa---ttttctTAGTAATTATGAGAATTATGAAGTTGCTTATGAGTTTTAGATTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65372751 197 + 171882078 tatagaatatgacctcaactatttaaaaatatctgtaagggtatatgtactttgataacaaaa-aacaaaatacatactgatagaaactagccatcatgtcaac-------agtggttatattaggtagagaaattatgtgagattttaa--tttttt-------------tatattttactac---tggtctcaataat--------------ggttctttacaagttttataatc
i macFas5.chr7              I 18636 C 0
s cerAty1.NW_012003658v1        37322 229 +    759272 TAGAGaatatgacctcaactattgaaacatatgtataagtgt-tatgtattttactagcaaag-aa-agaatatatactggtagaaaatggccatgatgtcaactgtcaatagtggttatattaggtagagaaattatgggagacttgaa--ttttttcttttttcttttctgtactttactaa---ttttctTAGTAATTATGAGAATTATGAAGTTGCTTATGAGTTTTAGATTT
i cerAty1.NW_012003658v1    C 0 C 0
s saiBol1.JH378276            2790370 213 +   3282555 tatagaatatgacctcaactatttaaacatatgtacaaatgtgtatgtattttactagcaaagaaa-aaaatatatactggtagaaaacagccatcatgtcaac-------agtggttgtactaggtagagaaattacgggagactttaattttctttcttttttcctttctatagtttactcatttttttttttacaat--------------ggttgcac--gagttttataatc
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       747333 211 +   1024465 tatagaatatgacctcaactatttaaacatatgtataaaggtgtatgtattttactagcaaag-aa-aaaatatatactggtagaaaacagccatcatgtcaac-------agtggttgtgttaggtagagaaattatgggagattttaattttctttcttttttcctttctacagtttactca---ttttcttcacaat--------------ggttgcacatgagttttataatc
i cebCap1.NW_016107979v1    C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873530           29597195 663 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e manLeu1.NW_012105520v1      1176787   0 +   1458659 I
e chlSab2.chr26               7728529   0 +  58131712 I

a score=10421.000000
s hg38.chr15_KI270850v1_alt    271229 4 +    430880 aaaa
s panTro5.chrY               25739032 4 -  26350515 aaaa
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       369756 4 +    378907 aaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18912453 4 - 121039945 aaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62685340 4 + 169600520 TAAA
i rheMac8.chr7              C 0 I 7410
s macFas5.chr7               65372948 4 + 171882078 aaga
i macFas5.chr7              C 0 I 4
s cerAty1.NW_012003658v1        37551 4 +    759272 TAAA
i cerAty1.NW_012003658v1    C 0 I 1
s manLeu1.NW_012105520v1       364928 4 -   1458659 AAAA
i manLeu1.NW_012105520v1    I 18928 C 0
s saiBol1.JH378276            2790583 4 +   3282555 aaga
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       747544 4 +   1024465 aaga
i cebCap1.NW_016107979v1    C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873530           29597195 663 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e chlSab2.chr26               7728529 0 +  58131712 I

a score=237735.000000
s hg38.chr15_KI270850v1_alt    271233 81 +    430880 --aaaG-GTTTTAAAAATTTTTCCAACATGGAAAGTTATATTTCTTTATATACT-AAAACAAAAACAAAACTTTCTATTTGAATA
s panTro5.chrY               25739036 81 -  26350515 --aaaG-GTTTT-AAAATTTTTCCAACATGGAAAGTTATATGTCTTTATAAACTAAAAACAAAAACAAAACTTCCTATTTGAATA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       369760 81 +    378907 --aaaG-GTTTTAAAAATTTTTCCAACATGGAAAGTTATATTTCTTTATATACT-AAAACAAAAACAAAACTTTCTATTTGAATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18912457 56 - 121039945 --aaaG-GTTTTTAAAGTT-------------------------TTTATATACT-AAAACAAAAACAAAACTTTCTATTTGAATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107018655 82 - 169600520 --AAAG-GTTTCTAAAGTTTTTGCAAAATGGGAAGTTATATTTCTTTATATACTAAAGACAAAAACAAAACTTCCTATTTGAATA
i rheMac8.chr7              I 25808 C 0
s macFas5.chr7               65372956 82 + 171882078 --aaaG-GTTTCTAAAGTTTTTGCAAAATGGGAAGTTATACTTCTTTATATACTAAAGATAAAAACAAAACTTCCTATTTGAATA
i macFas5.chr7              I 4 C 0
s cerAty1.NW_012003658v1        37556 82 +    759272 --AAAG-GTTTTTAAAATTTTTCCAACATGGAAAGTTATATTTCTTTATATACTAAAAACAAAAACAAAACTTTCTATTTGAATA
i cerAty1.NW_012003658v1    I 1 I 3772
s manLeu1.NW_012105520v1       364932 82 -   1458659 --AAAG-GTTTCTAAAGTTTTTGCAAAATGGGAAGTTATACTTCTTTATATACTAAAGATAAAAACAAAACTTCCTATTTGAATA
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2790587 84 +   3282555 aaaaaC-GTTTTAAAAATTTGTGCAAAATGGAAACTTGTATTTCTTTAAATACTAAAAACAAAAATAAAACTTTGTATTTGAATA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       747548 85 +   1024465 aaaaaaGGTTTTAAAAATTTTTGCAAAATGGAAACTTGTATTTCTTTAAATACTAAAAACAAAAATAAAACTTTGTATTTGAATA
i cebCap1.NW_016107979v1    C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873530           29597195 663 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e chlSab2.chr26               7728529  0 +  58131712 I

a score=9428.000000
s hg38.chr15_KI270850v1_alt    271314 3 +    430880 CCT
s panTro5.chrY               25739117 3 -  26350515 CCT
i panTro5.chrY              C 0 I 3770
s gorGor5.CYUI01015946v1       369841 3 +    378907 CCT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18912513 3 - 121039945 CCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107018737 3 - 169600520 CCT
i rheMac8.chr7              C 0 I 4411
s macFas5.chr7               65373038 3 + 171882078 CCT
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012105520v1       365014 3 -   1458659 CCT
i manLeu1.NW_012105520v1    C 0 I 91
s saiBol1.JH378276            2790671 3 +   3282555 TCT
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       747633 3 +   1024465 CCT
i cebCap1.NW_016107979v1    C 0 I 3695
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873530           29597195 663 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e chlSab2.chr26               7728529 0 +  58131712 I
e cerAty1.NW_012003658v1        37638 3772 +    759272 I

a score=5328.000000
s hg38.chr15_KI270850v1_alt    271317 3 +    430880 atg
s panTro5.chrY               25742890 3 -  26350515 atg
i panTro5.chrY              I 3770 C 0
s gorGor5.CYUI01015946v1       369844 3 +    378907 atg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               18912516 3 - 121039945 atg
i nomLeu3.chr6              C 0 n 0
s rheMac8.chr7              107023151 3 - 169600520 atg
i rheMac8.chr7              I 4411 C 0
s macFas5.chr7               65373041 3 + 171882078 TTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        41410 3 +    759272 atg
i cerAty1.NW_012003658v1    I 3772 C 0
s saiBol1.JH378276            2790674 3 +   3282555 TTG
i saiBol1.JH378276          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       747636 3695 +   1024465 I
e otoGar3.GL873530           29597195 663 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e manLeu1.NW_012105520v1       365017 91 -   1458659 I
e chlSab2.chr26               7728529 0 +  58131712 I

a score=4019.000000
s hg38.chr15_KI270850v1_alt    271320 2 +    430880 gc
s panTro5.chrY               25742893 2 -  26350515 gc
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       369847 2 +    378907 gc
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102200484 2 + 121039945 gc
i nomLeu3.chr6              I 5706 C 0
s rheMac8.chr7              107023154 2 - 169600520 gc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65373044 2 + 171882078 AC
i macFas5.chr7              C 0 I 87
s cerAty1.NW_012003658v1        41413 2 +    759272 gc
i cerAty1.NW_012003658v1    C 0 C 0
s saiBol1.JH378276            2790677 2 +   3282555 AC
i saiBol1.JH378276          C 0 I 5917
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       747636 3695 +   1024465 I
e otoGar3.GL873530           29597195 663 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e manLeu1.NW_012105520v1       365017 91 -   1458659 I
e chlSab2.chr26               7728529 0 +  58131712 I

a score=294337.000000
s hg38.chr15_KI270850v1_alt    271322 203 +    430880 aaaaccctatctctac-----aaaaaatacaaaaaa--------------ttagcaaggtggggtagtacacacctgtagtcccagctactctagaggctgaggtgggaggatcacctgagtccccagagaatgaggctccagtgagccgtgatcatagcactgcattccagcctgggagacagagaaagaccccatctcaaaaaaaaaaaaaaaagaaaga
s panTro5.chrY               25742895 203 -  26350515 aaaaccctgtctctac-----aaaaaatacaaacaa--------------ttagctaggtgggatagtacacatctgtagtcccagctactctggaggctgaggtgggaggatcacctgagtccccagacactgaggctccagtgagctgtgatcatactactgcattccagcctgggagacagagaaagacccaatctcaaaaaaaaaaaaaaaaaaaaaa
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       369849 203 +    378907 aaaaccctatctctac-----caaaaatacaaaaaa--------------ttagcaaggtgggatagtacacacctgtagtcccagctactctggaggctgaggtgggaggatcacctgagtccccagagaatgaggctccagtgagccgtgatcatagcactgcattccagcctgggagacagagaaagaccccatctcaaaaaaaaaaaaaaaaaaaaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102200486 206 + 121039945 aagactctgtctcaaa-----aaaaaaaaaaaaaaaaaaaaaaaaaaaagtttgccaagtgtggtggtacacacctgtagtcccaactactctggaggctgaggtgggaggatcacctgagtccccagagactgaggctgcagtgagctgtgatcaaaccactgccttccagcctgggcaacag-gcaagaccccatctcaataaatatata----------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107023156 199 - 169600520 aaaaccctgtctctacaaaaaaaaaaatacaaaaag--------------ttagccaggtgtggtggtacacacctgtagtcccaactactctggaggctgaggtgggaggatcacccaagtccccggagactcaggctgcagtgagccatgatcacaccactgcattctagcctgggcgacagggcaagactccatctcaa-------aaaTATATACA--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106637883 201 - 171882078 aaaaccctgtctctac-----gaaaaatacaaaaaa--------------gtagctaggtgtggtagcacacacctgtagtcccaactactgtggaggctaaggtgggaggatcacctgagtccccagagactgaggctccagtgatccatgaccataccactgcattccagcctgggcaacagagcaaaaccccatctcaaaaaaaagaaaaagaaaaa--
i macFas5.chr7              I 4107 C 0
s cerAty1.NW_012003658v1        41415 201 +    759272 aaaaccctgtctctac-----gaaaaatacaaaaaa--------------atagctaggtgtggtagtacacacctgtagtcccaactactgtggaggctaaggtaggaggatcacctgagtccccagagactgaggctccagtgatccatgaccataccactgcattccagcctgggcaacagagcaaaaccccatctcaaaaaaaagaaaaagaaaaa--
i cerAty1.NW_012003658v1    C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       747636 3695 +   1024465 I
e otoGar3.GL873530           29597195 663 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e manLeu1.NW_012105520v1       365017  91 -   1458659 I
e chlSab2.chr26               7728529   0 +  58131712 I
e saiBol1.JH378276            2790679 5917 +   3282555 I

a score=505131.000000
s hg38.chr15_KI270850v1_alt    271525 292 +    430880 aagaaaGaaaaaa-----------------gaaatatccacaatgatctgaaatgcctatc---------------------------tgtatgagactgtcctttgttcaca-ttttttcaagcaaatatcacacaataaattgaatgcagg--------------------------------tacaaatgacatat------------------caaacatcaaagaaatttgcaaaagatgtaagactgtacta----------------cCTTGGGTTTAGAAA-----TTTTCTTATCATAAAAGCATTTATAACAATATTTT--GTGAG-CTTttaaggaatattttaagtatttctgatttaatttctagtgataaataccaatagatataacccacatacac
s panTro5.chrY               25743098 309 -  26350515 aaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGAAATATCCATAATGATCTAAAATGGCtgtc---------------------------tgtatcagattggcctttgttcaca-ttttttcaagcaaatatcacacaataaatttaatggaaa--------------------------------ttcaaatgacgtat------------------caaacatcaacaaaatttgcaaaaggtgtaacattgtacta----------------ctttgggtttagaaa-----ttttcttttcataaaagcatttataacaaaatttg--gtgag-cttttaaagaatattctaaatatttctgatttaatttctagtgataaataccaatagatataacctatatacag
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       370052 297 +    378907 aaagaaagaaagaaaaaa------------GAAATATCCATAATGATCTGAAATGCCTATC---------------------------TGTATGAGACTGTCCTTTGTTCACA-TTTTTTCAAGCAAATATCACACAATAAATTGAATGCAGG--------------------------------TACAAATGACATAT------------------CAAACATCAAAGAAATTTGCAAAAGATGTAAGACTGTACTA----------------CCTTGGGTTTAGAAA-----TTTTCTTATCATAAAAGCATTTATAACAATATTTT--GTGAG-CTTttaaggaatattttaagtatttctgatttaatttctagtgataaataccaatagatataacctacataaac
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102200692 329 + 121039945 ------------------------------tatatatccacaatgatctaaaatggctatc---------------------------tgtatgaggttggcctttgttcaca-ttttttcaagaaaatatcacacaataaattgaatgcagaagcaaattgacatatcaatttgctaatgacatatcaaatgacatatcagacatcatgcaaatgacaaacatcaaagaaatttgcaaaagatgtaagattgtacta----------------ctttgggtttagaaa-----ttttcttttcataaaagcatttataacaatatgtg--gtgag-cttttaaagaatattttaaatatttctgatttaatttctagtgataaataccaatagatataacctacataaac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107023355 279 - 169600520 ------------------------------CATACATCCACAATGATCTAAAATGGTTATC---------------------------TGTATGAGATTGGCCTTTGTTCACA-TTTTTTCAAGGAAATATCACACAAGAAATTGAACGCAGA--------------------------------CACAAATGGCATAT------------------caaacatcaaagaaatttgcaaaagatgcaagactgtacta----------------ctttgggtttagaaa-----ttttcttttcataaaagcatttataacaatatgtg--gtgag-cttttaaagaatattttaaatatttctgatttaatttctagtgataaataacaatagatatgccctacataaac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106638084 279 - 171882078 ------------------------------gaaaTATCCACAATGATCTAAAATGGCtatc---------------------------tgtatgacattggcctttgttcaaatttttttcaagcaaatatcacacaataaattgaatgcaga--------------------------------cacaaatgacatac------------------caaacaccaaagaaatttgcaaaagat-taagattgtacta----------------ctttgggtttagaaa-----ttttcttttcataaaagcatttataacaatatttg--gtgaa-cctttaaagaatattttgaatatttctgatttaatttctagtgataaataccagtagatatcacctacatacac
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        41616 279 +    759272 ------------------------------gaaaTATCCACAATGATCTAAAATGGCTATC---------------------------TGTATGACATTGGCCTTTGTTCAAATTTTTTTCAAGCAAATATCACACAATAAATTGAATGCAGA--------------------------------CACAAATGACATAC------------------CAAACACCAAAGAAATTTGCAAAAGAT-TAAGATTGTACTA----------------CTTTGGGTTTAGAAA-----TTTTCTTTTCATAAAAGCATTTATAACAATATTTG--GTGAA-CCTttaaagaatattttgaatatttctgatttaatttctagtgataaataccagcagatatcacctacatacac
i cerAty1.NW_012003658v1    C 0 C 0
s otoGar3.GL873530           29597858 328 +  36342412 aatggagtatcaa-----------------ggaatatccacagttatcgaaaactgctattaaaatattcctttttttgaaccagatatctgggagactggattttgtttaca-ttatttcaaccaaaaaacacaaaacaaattgaatgcagt-----------------------------------agatgacagac------------------caaatatcaaagagatctgcaaaaatgttaagactgtcctactactctcactgaattcttttactttagaaaatatggttactcttcataaagccatttataataatatatgtagtaagttttttaatgaatgttctaaat------------atttctaatgataaatatcaacagataaaacctatataaac
i otoGar3.GL873530          I 663 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       747636 3695 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e manLeu1.NW_012105520v1       365017  91 -   1458659 I
e chlSab2.chr26               7728529   0 +  58131712 I
e saiBol1.JH378276            2790679 5917 +   3282555 I

a score=933899.000000
s hg38.chr15_KI270850v1_alt    271817 350 +    430880 aaaagctccttgggccctcaatatacttttaagagtgtaaaggaatcctgacccc-aaaactttgagaactgctgCCTTCCCCTCTACTTT-ATTCCTTC-CCTAGAATTTCTTCCTTGGAAGAAACATTCCTTTGCCATTCTATGTTAACTTACACAGTTCCATTGAGGCCAGTTTTGCTACCTCTCTCCCATCTTTCCACATCCCTCTCTTGACA-CAAAACCTGACCAAAGGACTCTACCGGCCCGCCCCATTTCCAGTGATTAGCTGTCAGGTGGGCTAAGCCAAGAAAATCTGGGTTTTCCCTGAGACT--AGACCTCTCTTTCTGGGAGATACGGAATCACAGGGACAAG
s panTro5.chrY               25743407 350 -  26350515 aaaagctccttgggccctcaatatacttttaagagtgtaaaggaatcctgacccc-aaaactttgagaactgctgCCTTCCCCTCCACTTT-CTTCCTTC-CCTAGAATTTCTTCCTTGGAAGAAACATTCCTTTGCCATTCTATGTTAACTTACATAGTTCCATTGAGGCCAGTTTTGCTACCTCTCTCCCATCTTTCCACATCCCGCTCTTGACA-CAAAACCTGACCAAAGGACTCTACTGGCCCACCCCATTTCCAGTGATTAGCTCTCAGGTGGGCTAAGCCAAGAAAATCTGGGTTTTCCCTGAGACT--AGACCTCTCTTTCTGGGAGATATGGAATCACAGGGACAAG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       370349 350 +    378907 aaaagctccttgggccctcaatatacttttaagagtgtaaaggaatcctgacccc-aaaacttggagaactgctgCCTTCCCCTCCACTTT-CTTCCTTC-CCTAGAATTTCTTCCTTGGAAGAAACATTCCTTTGCCATTCTATGTTAACTTACATAGTTCCATTGAGGCCAGTTTTGCTACCTCCCTCCCATCTTTCCACATCCCTCTCTTGACA-CAAAACCTGACCAAAGGACTCTACCGGCCCACCCCATTTCCAGTGATTAGCTGTCAGGTGGGCTAAGCCAAGAAAATCTGGGTTTTCCCTGAAACT--AGACCTCTCTTTCTGGGAGATACGGAATCACAGGGACAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102201021 349 + 121039945 caaagctccttgggccctcaatatatttttaagagtgtaaaggaatcctgacccc-aaaactaggagaactgctgccttcccctccactttccttccttc-cctAGAATTTCTTCCTTGGAAGAAACATCCCTTTGCCATTCTATATTAACTTACATAGTTCCATTGAGGCCAGTTTTGCTACCTCCCTCCCATCTTT--ACACCTCTCTCTCAACA-TAAAACCTGACCAAAGGATTCTACCAGCCCACCCCATTTCCAGTGATTAGCTGTCAGGTGTGCTAAGTGAAGCAAATCTGGGTTTTCCCTGAGACT--AGACCTCTCTTTCTGGGAGAGATGGAATCACAGAGACAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107023634 349 - 169600520 caaagctccttgggccctcaatatatttttaagagtgtaaaggaatcctgacccc-aaaactttgagaactgctgCCTTCCCTTCCAGTTTCCTTCCTTC-TCTAGAATTTCTTCCTTGGAAGAAGCATCCCTCTGCCATTCTATATTAACTTATAGAGTTCCATTGAGGCCAGTTTTGCTACCTCCCTCCCATCTTTCCACCTC--TCTCTCAACA-CAAAACCTGAGCAAAGGACTCTACCAGCCCACCCCATTTCCAGTGATTAGTTGCCAGGTGGGCTAAGCCAAGCAAATCTGGGTTTTCCCTGAGACT--AGACCTCTCTTTTTGGGAGATCTGGAATCACAGGGACAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106638363 349 - 171882078 aaaagctccttgggccctcaatatatttttaagagtgtaaaggtatcctgacccc-aaaactttgagaactgctgTCTTCCCCTCCACTTT-CTTCCTTC-CCTTGAATTTCTTCCTTGGAA-AAACATTCCTTTGCCATTCTACGTTAACTTATTTAGTTCAATTGAGGCCAGTTTTGCTACCTCTCTCCCGTCTTTCCACATCCTTCTCTTGACA-CAAAACCTGACCAAAGGAGTCTACCAGCCCACCCCATTTCCAGTGATTAGCTGTCAGGTGGGCTAAGCCAAGCAAATCTGAGTTTTCCCTGAGACT--AGACCTCTCTTTCTGGGAGATATGGAACCACAAGGACAAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        41895 350 +    759272 aaaagctccttgggccctcaatatatttttaagagtgtaaaggaatcctgacccc-aaaactttgagaactgctgTCTTCCCCTCCACTTT-CTTCCTTC-CCTTGAATTTCTTCCTTGGAAGAAACATCCCTTTGCCATTCTACATTAACTTACTTAGTTCCATTGAGGCCAGTTTTGCTACCTCTCTCCCATCTTTCCACATCCCTCTCTTGACA-CAAAACCTGACCAAAGGAGTCTACCAGCCCACCCCATTTCCAGTGATTAGCTGTCAGGTGGGCTAAGCCAAGCAAATCTGAGTTTTCCCTGAGACT--AGACCTCTCTTTCTGGGAGATATGGAACCACAGGGACAAG
i cerAty1.NW_012003658v1    C 0 C 0
s cebCap1.NW_016107979v1       751331 345 +   1024465 aaaagctccttgggccctcaatatatttttaagagtgtaaaggagtccagacact-aaaagtttaagaacttctgccttcccctccactttccttccttc-cctAGTATTTCTTCCGTGGAAGAAATATCCCTTTGCCATTTTATATTAATTTATACAGTTCCATTGAGGCCAGTTTTGCTACCTCCCTCCCATCCTTCCACCTCCCTCTCTTGACA-CAAAATCTGACCAAAGGACTCTACCAGCATACCCCATTTCCAGAGATTAGCTATCAGGTGGGCTAAACAAAGAAAATCTGAGTTTTCCCTAAGG--------CTCTCTTTCTAGGAGATCTGGAATCACAGGGACAAG
i cebCap1.NW_016107979v1    I 3695 I 76
s otoGar3.GL873530           29598186 342 +  36342412 aaaggctccttgaaacctcaatatatttt---gagtgtaaaggaaccctgacttcaaaaactttgcgaactgctgCCTTTCCCTCTATTTT-CTCCCCTCAACTAGAATTTCTTCCTTGGAAGAAACATCCTTTTATCATTCTTTACGAACCTTTGTAGCTCCACTGGGACTAGTTTTGCTACCTCCATCCCATCTTTTTCCTTCCCTCCCATGACATTAACACCTGACCAAAAGA--CTGACAGCCCACTCCACC--------TTATCTGTCAGGTGGACTAAGCCAGGAAAATTCAGGCCTTTCTTGAGGCTAGAGAGCTCTCTTTCTGGGAGACCTGGAGTCTCAAGGATAAT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e manLeu1.NW_012105520v1       365017  91 -   1458659 I
e chlSab2.chr26               7728529   0 +  58131712 I
e saiBol1.JH378276            2790679 5917 +   3282555 I

a score=342304.000000
s hg38.chr15_KI270850v1_alt    272167 176 +    430880 GCTGGCC--CT-------GTCAGAATTCATCTTGTCTAAATGGGAAGAGGTTAGGCAAGTTTCTAGAATGCCAGACTGCTTTCTAGAAAGTCAAAGATAATTATACTTTCTGCCACGACTGTGAAAATGCCCATTTCATTGCACGCTTTCTAACATTTATACCAATCTGATAAATAAAAGCTGGT
s panTro5.chrY               25743757 184 -  26350515 ATTGGCCACCTAGGGATAGTCAGAATTCATCTTACCTAAATGGAAAGAGGTTAGGCAAGTTTCTAGAATGCCAGACTGCTTTCTAGAAAGTCAAAGATAATTATACTTTCTGCCACGACTGTGAGAATGCCCATTTCATTGCACACTTTCTGACATTTTTACCAATCTGAAAAATAAAA-CTAGT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       370699 176 +    378907 GCTGGCC--CT-------GTCAGAATTCATCTTGTCTAAATGGGAAGAGGTTAGGCAAGTTTCTAGAATGCCAGACTGCTTTCTAGAAAGTCAAAGATAATTATACTTTCTGCCACGACTGTGAAAATGCCCATTTCATTGCACACTTTCTAACATTTTTACCAATCTGATAAATAAAAGCTGGT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102201370 185 + 121039945 GTTGGCCACCTTGGGGTAGTGAGAATTCATCCTGCCTAAACAGGGAGAATTCAGACAAGTTTCTAGAAAGCCAAACTACTTTCTAGAAAGTCAAAGATAATTATATTTTTTGCCATGACTGTAAGAATGCCCATTTCATTGCATACTTTCTAACATTTTTACCAATCTGATAAATAAAAGCTGGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107023983 185 - 169600520 GCTGGCCACCTTGGGGCAGTCAGAATTCATCCTGCCTAATCAGGGAGAGTTCAGACAAGTTTCTAGAAAGCCAAACTACTTTCTGGAAAGTCAAAGATAATTATATTTTTTGCCATGACTGTAAGAATGCCCATTTCATTGCACACTTTCTAACATTTTTACCAATCTGATAAATAAAAGCTGGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106638712 185 - 171882078 ATGGGCCACCTTGGGGTAGTCAGAATTCATCTTGCCTAAATGGGAAGAGGTTAGGCAAGTTTCTAGAAAGCCAAACTGCTTTCTGGAAAGTCAAAGATAATTATACTTTCTGCCATGACTGTGAGAATGCACATTTCATTGCACACTTTCTAGTATTTTTACCAATCTGATAAGTAAAAGCTGGT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        42245 185 +    759272 ATGGGCCACCTTGGGGTAGTCAGAATTCATCTTGCCTAAATGGGAAGAGGTTAGGCAAGTTTCTAGAAAGCCAAACTGCTTTCTGGAAAGTCAAAGATAATTATACTTTCTGCCATGACTGTGAGAATGCCCATTTCATTGCACACTTTCCAATATTTTTACCAATCTGATAAGTAAAAGCTGGT
i cerAty1.NW_012003658v1    C 0 C 0
s otoGar3.GL873530           29598528 164 +  36342412 GTTGGCCTATCTGGGGTAGTCAATATACATCAGGCGTAGA--------------GCCAGTATATGGA--GACAAATCACTTTCTAAAAAGTCATAAA-AAGTATACTTCCTGCCATGGCTATGAGAACACCCACTTCACTGCACACTTGCTAACATTTTTTCCAATCTGA----TAAAAGCTGGT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       751676  76 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e manLeu1.NW_012105520v1       365017  91 -   1458659 I
e chlSab2.chr26               7728529   0 +  58131712 I
e saiBol1.JH378276            2790679 5917 +   3282555 I

a score=212286.000000
s hg38.chr15_KI270850v1_alt    272343 136 +    430880 ACCTAGAAGAAAAAAAggct-gggtatggtggctcatgcctgtaatcccagtactttgggagaccaaggtgagtggatcacctgaggtcaggagttcgagacaagcctggccaacatgatgaaaccccatctctagt
s panTro5.chrY               25743941 136 -  26350515 ACCTAGAAGAAAAAAAggct-gggtgtggtggctcatgcctgtaatcccagcaccttgggaggccaaggtgagtggatcacccaaggtcaggagttccagaccagcctggccaacatggtgaaaccccatccctact
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       370875 136 +    378907 ACCTAGAAGAAAAAAAggct-gggtatggtggctcatgcctgtaatcccagtactttgggagaccaaggtgagtggatcacctgaggtcaggagttcgagacaagcctggccaacatgatgaaaccccatctctagt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102201555 137 + 121039945 ACTGAGATGAAAAAAATGCTGgggtacagtggctcacacctgtaatcccaatactttgggaggccgaggtggccaaatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaactccgtctttact
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107024168 136 - 169600520 ACTAAGAAGGAAAAAAggct-gggcacagaggctcacgcctgtaatcccaacactttgggaggctgaggtgggaaaatcacctgaagtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctact
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              106638897 136 - 171882078 ACCTAGAAGAAAAAAAggcc-gggtgtggtggctcatgcctgtaatcccagcactttgggaggccaaggtgagtggatcacccaaggtcaggagctccagaccagcccggccaacatgatgaaaccccatctctact
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        42430 135 +    759272 ACCTAGAAGAAAAAAAggcc-aggtgtggtggctcatacctg-aatcccagcactttcagagaccaaggagagtggatcacccaaggtcaggagctccagaccagcccggccaacatgatgaaaccccatctctact
i cerAty1.NW_012003658v1    C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       751676  76 +   1024465 I
e otoGar3.GL873530           29598692   0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e manLeu1.NW_012105520v1       365017  91 -   1458659 I
e chlSab2.chr26               7728529   0 +  58131712 I
e saiBol1.JH378276            2790679 5917 +   3282555 I

a score=23315.000000
s hg38.chr15_KI270850v1_alt    272479 12 +    430880 aaaaacacaaac
s panTro5.chrY               25744077 12 -  26350515 aaaaatagaacc
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       371011 12 +    378907 aaaaacacaaac
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102201692 12 + 121039945 aaaaatacaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107024304 12 - 169600520 aaaaatacaaaa
i rheMac8.chr7              C 0 I 306
s macFas5.chr7              106639033 12 - 171882078 aaaaatacaaaa
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        42565 12 +    759272 aaaaatacaaaa
i cerAty1.NW_012003658v1    C 0 C 0
s chlSab2.chr29               3871282 12 +  24206276 aaaaatacaaaa
i chlSab2.chr29             I 51482 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       751676 76 +   1024465 I
e otoGar3.GL873530           29598692  0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e manLeu1.NW_012105520v1       365017 91 -   1458659 I
e saiBol1.JH378276            2790679 5917 +   3282555 I

a score=137416.000000
s hg38.chr15_KI270850v1_alt    272491 63 +    430880 attagccgggcatggtggcaggcccctgtaatc-ccaactactcgggaggctgaggcaagagga
s panTro5.chrY               25744089 63 -  26350515 attagccaggcatggtggcagccacctgtaatc-ccaactactcaggaggctgaggcaggagaa
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       371023 63 +    378907 attagccgggcatggtggcaggccgctgtaatc-ccaactactcgggaggctgaggcaagagaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102201704 63 + 121039945 attagccaggcatggtggcatgcgcctgtaatc-tcagctacttgggaggctgaggcaggagaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107024622 63 - 169600520 attagccaggcatggtggcacgtgcctgtaatc-ccagctacttgggaggccgaggcaggagaa
i rheMac8.chr7              I 306 C 0
s macFas5.chr7              106639045 63 - 171882078 attagccaggcatggtggcaggctcctgtaatc-cctgctactcgggaggctgaggcaggagaa
i macFas5.chr7              C 0 I 2310
s cerAty1.NW_012003658v1        42577 63 +    759272 attagccaggcatggtggcaggctcctgtaatc-cctgctactcgggaggctgaggcaggagaa
i cerAty1.NW_012003658v1    C 0 C 0
s chlSab2.chr29               3871294 64 +  24206276 attagccaggcatggtggcacgcacctgcacgcaccagctacttgggaggccgaggcaggagaa
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       751676 76 +   1024465 I
e otoGar3.GL873530           29598692  0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e manLeu1.NW_012105520v1       365017 91 -   1458659 I
e saiBol1.JH378276            2790679 5917 +   3282555 I

a score=22633.000000
s hg38.chr15_KI270850v1_alt    272554 8 +    430880 tcacttga
s panTro5.chrY               25744152 8 -  26350515 tcagttga
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       371086 8 +    378907 tcacttga
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102201767 8 + 121039945 ttgcttga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107024685 8 - 169600520 tcacttga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65373133 8 + 171882078 tcacttga
i macFas5.chr7              I 87 C 0
s cerAty1.NW_012003658v1        42640 8 +    759272 tcacttga
i cerAty1.NW_012003658v1    C 0 C 0
s chlSab2.chr29               3871358 8 +  24206276 tcgcttga
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       365108 8 -   1458659 tcacttga
i manLeu1.NW_012105520v1    I 91 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       751676 76 +   1024465 I
e otoGar3.GL873530           29598692 0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e saiBol1.JH378276            2790679 5917 +   3282555 I

a score=164573.000000
s hg38.chr15_KI270850v1_alt    272562 64 +    430880 acctgggaggtggaggttttagtgagccaagatcatgccattgccctccagcctgggtgacaag
s panTro5.chrY               25744160 64 -  26350515 acctgggaggtggaggttttagtgagccaagatcacgccattgcactccagcctgggtgacaag
i panTro5.chrY              C 0 I 26
s gorGor5.CYUI01015946v1       371094 64 +    378907 acctgggaggtggaggttttagtgagccaagatcatgccattgccctccagcctgggtgacaag
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102201775 64 + 121039945 acccaggaggtggaggttgcagtgagctgagatcatgccattgcactccagcctgggcgacaag
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr7              107024693 64 - 169600520 acccaagaggcggaggttgcagtaagctgtgatcacgccattgcactccagcctgggagacaag
i rheMac8.chr7              C 0 I 1
s macFas5.chr7               65373141 64 + 171882078 acccgggaggcggaggttgcagtgagctgtgatcacgccattgcactccagcctgggagacaag
i macFas5.chr7              C 0 I 1
s cerAty1.NW_012003658v1        42648 64 +    759272 atctgggaggtggtggttgtagtgagccaggatcatgcctttgcactccagcctgggtgacaag
i cerAty1.NW_012003658v1    C 0 I 1
s chlSab2.chr29               3871366 64 +  24206276 acccaggaggcagaggttccagtaagctgtgatcacaccattgcactccagcctgggagacaag
i chlSab2.chr29             C 0 I 1
s manLeu1.NW_012105520v1       365116 64 -   1458659 acccgggaggcggaggttgcagtgagctgtgatcacgccattgcactccagcctgggaaacaag
i manLeu1.NW_012105520v1    C 0 I 1
s otoGar3.GL873530           29598692 10 +  36342412 ACCTAGAAGG------------------------------------------------------
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       751676 76 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e saiBol1.JH378276            2790679 5917 +   3282555 I

a score=30617.000000
s hg38.chr15_KI270850v1_alt    272626 37 +    430880 ctgagactttgtctcaaaaaaaaaa---aaaaaaaaaaaa
s gorGor5.CYUI01015946v1       371158 27 +    378907 gtgagactttgtctc-------------aaaaaaaaaaaa
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102201840 37 + 121039945 acaagacttcatctcaaaaaaaaaa---aaaaaaaaaaaa
i nomLeu3.chr6              I 1 I 13
s rheMac8.chr7              107024758 38 - 169600520 acaagacttcatctcaaaaaaaaaaaagggaaaaaaaa--
i rheMac8.chr7              I 1 C 0
s macFas5.chr7               65373206 35 + 171882078 acaagacttcatctcaaaaaaaaaa---ggaaaaaaaa--
i macFas5.chr7              I 1 C 0
s cerAty1.NW_012003658v1        42713 25 +    759272 gcgagactttatctcaaaaaataaa---------------
i cerAty1.NW_012003658v1    I 1 C 0
s chlSab2.chr29               3871431 32 +  24206276 acaagacttcacctcaaaaaaaa------ggaaaaaaa--
i chlSab2.chr29             I 1 C 0
s manLeu1.NW_012105520v1       365181 35 -   1458659 acaagacttcatctcaaaaaaaaaa---ggaaaaaaaa--
i manLeu1.NW_012105520v1    I 1 C 0
s otoGar3.GL873530           29598702  7 +  36342412 ----------------AAAAACA-----------------
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       751676 76 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e saiBol1.JH378276            2790679 5917 +   3282555 I
e panTro5.chrY               25744224 26 -  26350515 I

a score=377244.000000
s hg38.chr15_KI270850v1_alt    272663 134 +    430880 GTTTCCATACAATATAATTTGTTCCATCTCTAAAAACCAATTCAGCAAT---AACTGAAAGCCACCACTT---GGAAGGTTTCAAGG----------------------ATTTAGCTCTACCTGTTGATGATGTCCAAAGCATTAGTTAAGGTA-G---AAAAAA-A-
s panTro5.chrY               25744250 134 -  26350515 TTTTCCATACAATATAATTGGTTCCATCTCTAGAAACCAATTCAGCAATGAGAACTGGAAGCCACCACAT---GGAAGGTTTCAAGG----------------------ATTTAGCTCTAGCTATTGATG---TCTAAAGCATTAGTTAAGGTA-G---AAAaca-c-
i panTro5.chrY              I 26 C 0
s gorGor5.CYUI01015946v1       371185 132 +    378907 GTTTCCATACAATATAATTTGTTCCATCTCTAAAAACCAATTCAGCAAT---AACTGAAAGCCACCACTT---GGAAGGTTTCAAGG----------------------ATTTAGCTCTACCTGTTGATG---TCCAAAGCATTAGTTAAGGTAGG---AAAAAA-A-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102201890 133 + 121039945 GTTCCCATACAATATAATTTCTCCCATCTCTAGAAACAAATTCAGCAATGAGAACTGAAAGTCACCACGT---GGAAGGTTTCAAGG----------------------ATTTAGGTCTACCTATTGATA---TCTAAAGCATTAGTTAACGTA-G---AAAG-A-A-
i nomLeu3.chr6              I 13 C 0
s rheMac8.chr7              107024796 133 - 169600520 GTTCCCATACAATATAATTTCTTCCATCTCTGGAAACAAATTCAGCAATGAGAATTGAAAGTCACCATGT---GGAAGGTTTCAAGG----------------------ATGTAGGTCTACCTATTGATG---TCTAAATCATTAGTTAAGTTA-G---AAAAAA---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65373241 133 + 171882078 GTTCCCATACAATATAATTTCTTCCATCTCTGGAAACAAATTCAGCAATGAGAATTGAAAGTCACCACGT---GGAAGGTTTCAAGG----------------------ATTTAGGTCTACCTATTGATG---TCTAAAGCATTAGTTAAGTTA-G---AAAAAA---
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        42738 134 +    759272 TTTTCCATACAATATAATTTGCTCCATGTCTAGAAACCAATTCAGCAATGAGAACTGAAAGCC-CCACTT---GGAAGGTTTCAAGG----------------------ATTTAGCTCTACCTATGGATG---TCCAAA-CATTAGTTAAGGTA-GAAAAAAAAA---
i cerAty1.NW_012003658v1    C 0 C 0
s chlSab2.chr29               3871463 134 +  24206276 GTTCCCATACAACATAATTTCTTCCATCTCTGGAAACAAATTCAGCAATGAGAACTGAAAGTCACCATGT---GGAAGGTTTCAAGG----------------------ATGTAGGTCTACCTACTGATG---TCTAAAGCACTAGTTAAGTTA-G---AAAAAAC--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       365216 134 -   1458659 GTTCCCATACAATATAATTTCTTCCATCTCTGAAAACAAATTCAGCAATGAGAATTTAAAGTCACCACGT---GGAAGGTTTCAAGG----------------------ATTTAGGTCTACCTATTGATG---TCTAAAGCATTAGTTAAGTTA-G---AAAAAAA--
i manLeu1.NW_012105520v1    C 0 I 84
s otoGar3.GL873530           29598709 150 +  36342412 ATTCCTATACAATATAATT---------TCTAGAGACCAATTCAGCAATAAGAAATTAAAGTCACCACTTCTAGGAAGGTTTCAAAGAACATGATCTACATTCACAAGTAATTAGCTCTAGCTATTAATG---TTCAAAGCATTATTTATGACA-G---AAAAAA--A
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       751676  76 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e saiBol1.JH378276            2790679 5917 +   3282555 I

a score=1804.000000
s hg38.chr15_KI270850v1_alt    272797 5 +    430880 ATaca
s panTro5.chrY               25744384 5 -  26350515 acgtg
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       371317 5 +    378907 ATaca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102202023 5 + 121039945 ATata
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107024929 5 - 169600520 CTacg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65373374 5 + 171882078 ATACG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        42872 5 +    759272 ATaca
i cerAty1.NW_012003658v1    C 0 C 0
s chlSab2.chr29               3871597 4 +  24206276 -Tacg
i chlSab2.chr29             C 0 C 0
s otoGar3.GL873530           29598859 1 +  36342412 --A--
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       751676 76 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e manLeu1.NW_012105520v1       365350 84 -   1458659 I
e saiBol1.JH378276            2790679 5917 +   3282555 I

a score=382260.000000
s hg38.chr15_KI270850v1_alt    272802 151 +    430880 c-acacacacaca----------------cacacacacacacaca----------cacTCACCCCTATGTAGTCAGTACCAGGAAACACGAAAGACTAGAT-GGTACAGTCATCCAACACAAAGCACACAATAACTGAAGGCACTGTAGAGGA--GTAACTT-ATGACACAGATCTACAATA
s panTro5.chrY               25744389 161 -  26350515 c-acacacacaca----------------cacacacagaaacacaaacactcactcactcacCCCTATGTATTCAGTGCCAGAAAACGTGAATGACTAGAT-GGTATAGTCATCCAACACAAAGCACACAATAACTGAACACACTGTAGAGGA--GTAACTT-ATGACACGGATCTACAATA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       371322 153 +    378907 caacacacacaca----------------cacacacacacacaca----------cacTCACCCCTATGTAGTCAGTACCAGGAAACATGAAAGACTAGATAGGTACAGTCATCCAACACAAAGCACACAATAACTGAAGGCACTGTAGAGGA--GTAACGT-ATGACACAAATCTACAATA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102202028 147 + 121039945 c-atacacgcacg----------------cacacacacgtacaca--------------tacccataTGTATTCAGTACCAGAAAACATGACGGACTACAT-GGTACAGTCATCCAACAGAAAGCACACACTAACTGAAGGCAATGGAGAGGA--GTAAGTT-ATAGCATGGATCTACAATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107024934 159 - 169600520 c-acacacacgcgcacgcacacacacgcacacgcacacacacaca--------------tacCCCTATGTATTCAGTACCAGGAAACATGACTGACTACAT-GGTACAGTCATCCAACAGAAAGCACACAATAACTGAAGCCAATGTAGAG------AAGTT-ATGACGTGGATCTACAATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65373379 147 + 171882078 C-Gcacacacgcg----------------cacgcacacacacaca--------------tacCCCTATGTATTCAGTACCAGGAAACATGACTGACTGCAT-GGTACAGTCATCCAACAGAAAGCACACAATAACTGAAGCCAATGTAGAGAA--GCAAGTT-ATGACGTGGATCTACAATA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        42877 152 +    759272 c-acacacacaca----------cacacacacacacacacacacT--------------CACCCCTATGTATTCAGTACCAGGAAACACAA-TGACTAGAC-GGTACAGTCATCCAACACAAAGCACACAATAACTGAAGGCACTGTAGAGGA--GTAACTT-CTGACACAGATCTACAATA
i cerAty1.NW_012003658v1    C 0 C 0
s chlSab2.chr29               3871601 143 +  24206276 c-acacacacgcg----------------cacgcacacacacaca--------------cacCCCTATGTATTCAGTACCAGGAAACATGACTGACTACAC-GGTACAGTCATCCAACAGAAAGCACACAATAACTGAAGCCAATGGAGAG------AAATT-ATGATGTGGATCTACAATA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       365434 147 -   1458659 C-ACACACACGCA----------------CACGCACACACACACA--------------TACCCCTATGTATTCAGTACCAGGAAACATGACTGACTACAT-GGTACAGTCATCCAACAGAAAGCACACAATAACTGAAGCCAATGTAGAGAA--GTAAGTT-ATGACGTGGATCTACAATA
i manLeu1.NW_012105520v1    I 84 C 0
s otoGar3.GL873530           29598860 115 +  36342412 ----------------------------------ACCCAAACACA------------------TTTATATGTGCAGTACTAGGAGACAAGACTGACTAGAT-AGTACACTCAT--------------ACAACAATTGGAGCCACTGTACAGGACGGTGTGCTAATGACACAAACCTACAATA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       751676  76 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e saiBol1.JH378276            2790679 5917 +   3282555 I

a score=489271.000000
s hg38.chr15_KI270850v1_alt    272953 139 +    430880 TTG---AGTGAAAATGCAGATTAC---AAAAAAAAAATCTGATTTTT-T----AAGGGAGAGGGAACACATACAAGCAAAGGAGAAAAGAGATGAGCAGATGAC-TG-AAAGATACAAAATTCTGATAGTGGTACATTCTGAGTGGTAGAAT
s panTro5.chrY               25744550 142 -  26350515 TTGTTGAGTGAAAAAGCAGATTAC---AAAAAAAAA-TCTGATTTTT-T----AAGGGAGAGGGAACACATACAAGCAAAGGAGAAAAGAGGTGAGCAGATGAT-GGGAAAGATACAAAATTCTGACAGTGGTACATTCTGAGTGGTAGAAT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       371475 140 +    378907 TTGTCGAGTGAAAATGCAGATTAC---AAAAAAAA--TCTGATTTTT-T----AAGGGAGAGGGAACACATACAAGCAAAGGAGAAAAGAGATGAGCAGATGAC-TG-AAAGATACAAAATTCTGATAGTGGTACATTGTGAGTGGTAGAAT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102202175 141 + 121039945 CTGCTGAGTGAAAAAGCAGATTAC---AAACAAATA-TCTGA-TTTT-T----AAGGGAGAGGAAACATATACAAGCATAGGAGAAAAGAGATGAGCAGCTGAC-TGGAAAGATACAAATTTCTGACAGTGGAACTTTCTGAGTGGTAGAAT
i nomLeu3.chr6              C 0 I 2
s rheMac8.chr7              107025093 142 - 169600520 TTGTTGAGTGAAAAAGCAGATTAC---AAACAAAAA-TCTGA-TTTT-T----AAGGGAGAGGAAACATACACAAGCATAGGAGAAAAGAGATGAGCAGATGACTTGGAAAGATACAAATTTCTAATAGTGGCACCTTCTGAGTGGTAGAAT
i rheMac8.chr7              C 0 I 2
s macFas5.chr7               65373526 142 + 171882078 TTGTTGAGTGAAAAAGCAGATTAC---AAACAAAAA-TCTGA-TTTT-T----AAGGGAGAGGAAACATACACAAGCATAGGAGAAAAGAGATGAGCAGATGACTTGGAAAGATACAAATTTCTGATAGTGGCACCTTCTGAGTGGTAGAAT
i macFas5.chr7              C 0 I 2
s cerAty1.NW_012003658v1        43029 145 +    759272 TTGTTGAGTGAAAAAGCAGATTACAAAAAAAAAAAA-TCTGA-TTTTGT----AAGGGAGAGGGAACACATACAAGCACAGGAGAAAAGAGATGAGCAGAGGAC-TGGAAAAATACAAAATTCTCATGGTGACACATTCTGAGTGGTAGAAC
i cerAty1.NW_012003658v1    C 0 C 0
s chlSab2.chr29               3871744 141 +  24206276 TTGTTGAGTGAAAAAGCAGATTAC---AAACAAAAA-TCTGA-TTTT-T----AAGGGAGAGGAAACATACACGAGCATAGGAGAAAAGAGATGAGCAGATGACTTGGAAAGATACAAATTTCTGAT-GCGGCACCTTCTGAGTGATAGAAT
i chlSab2.chr29             C 0 I 2
s manLeu1.NW_012105520v1       365581 142 -   1458659 TTATTGAGTGAAAAAGCAGATTAC---AAACAAAAA-TCTGA-TTTT-T----AAGGGAGAGGAAACATACACAAGCAAAGGAGAAAAGAGATGAGCAGATGACTTGGAAAGATACAAATTTCTAATAGTGGCACCTTCTGAGTGGTAGAAT
i manLeu1.NW_012105520v1    C 0 I 2
s cebCap1.NW_016107979v1       751752 139 +   1024465 ---TTGAGTGAAAAAGCACATTAC---AAAAAAAAA-GCTGATTTTT-T----AAGGAAGAAGGAACATATATAAGCATTGGAGAAAAGAGATGAGCAGATGAC-CAGAAAGATACAAAATTCTGATAGTGGTATCTTCTGAGTGGTAGAAT
i cebCap1.NW_016107979v1    I 76 I 239
s otoGar3.GL873530           29598975 133 +  36342412 TTGTGCAGTAAGAA---AGATTAC---AAAATAA---TCTGA-TCTT-TTAAGAAGAGGGAGGGAgtaaatataagtgtaagag-aaagagacagctaaaagat------atataccaaaat-tgagagtggtatcttctgagtggtaagat
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I
e saiBol1.JH378276            2790679 5917 +   3282555 I

a score=138837.000000
s hg38.chr15_KI270850v1_alt    273092 54 +    430880 TATCAGTATTATTT---TCTAGTTTTGCCTAAAAATTTTCTAAATTTCT-----TAA-----GAACT
s panTro5.chrY               25744692 59 -  26350515 TACTGGTATTATGT---TCTAGTTTTGCCTAAAAATTTTCTAAATTTCT-----TAAAATAAGAAGT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       371615 54 +    378907 TATCAGTATTATTT---TCTAGTTTTGCCTAAAAATTTTCTAAATTTCT-----TAA-----GAACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102202318 56 + 121039945 TATAGGTAATATTT---TCTAGTTTTGCCTAAAAGTTTTCTAAATTTCT-----TAA---AATAAGG
i nomLeu3.chr6              I 2 C 0
s rheMac8.chr7              107025237 54 - 169600520 TATAGGTAGTATTT---TCTAGTTTTGCCTAAAAAATTGCTAAATTTCT-----TAA-----GAAGG
i rheMac8.chr7              I 2 C 0
s macFas5.chr7               65373670 54 + 171882078 TATAGGTAATATTT---TCTAGTTTTGCCTAAAAAATTGCTGAATTTCT-----TAA-----GAAGG
i macFas5.chr7              I 2 C 0
s cerAty1.NW_012003658v1        43174 59 +    759272 TATTGGTATGATTT---TCTAGTTTTGCCTAAAAATTTTCTAAACTTCTTAAAATAA-----GAAGT
i cerAty1.NW_012003658v1    C 0 C 0
s chlSab2.chr29               3871887 54 +  24206276 TATAGGTAATATTT---TCTAGTTTTGCCTAAAAAATTGCTAAATTTCT-----TAA-----GAAGG
i chlSab2.chr29             I 2 C 0
s manLeu1.NW_012105520v1       365725 54 -   1458659 TATAGGTAATATTT---TCTAGTTTTGCCTAAAAAATTGCTGAATTTCT-----TAA-----AAAGG
i manLeu1.NW_012105520v1    I 2 C 0
s otoGar3.GL873530           29599108 60 +  36342412 gacaggtgatttttttcttcagttcttcttACAGA-TTTCTAAATTCCTTACG-TAA-----GAATG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       751891 239 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e saiBol1.JH378276            2790679 5917 +   3282555 I

a score=207252.000000
s hg38.chr15_KI270850v1_alt    273146 55 +    430880 TTTTGTTATCCATATTATCAAATAT--CCATCACCCCAGGAAACTTAACCTTGAGCA
s panTro5.chrY               25744751 55 -  26350515 TTTTGTTATCCATATTATAAAATAT--CCATCACCCCAGGAAACTTAACCTTGAGCA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       371669 55 +    378907 TTTTGTTATCCATATTATCAAATAT--CCATCACCCCAGGAAACTTAACCTTGAGCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102202374 55 + 121039945 CTTTGTTTTACATATTATAAAATAT--CCATCACCCCAGGAAATTTAACCTTCAGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107025291 55 - 169600520 TTTTGCTTTCCATATTATAAAATAG--CCATCACCCCGGGAAATTTAGCCTTCAGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65373724 55 + 171882078 TTTTGCTTTCCATATTATAAAATAG--CCATCACCCCGGGAAATTTAGCCTTCAGCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        43233 55 +    759272 TTTTGTTATCCATATTATAAAATAT--CCATCACCCCAGGAAATTTAACCTTGAGCA
i cerAty1.NW_012003658v1    C 0 I 28
s chlSab2.chr29               3871941 55 +  24206276 TTTTGCTTTCCATATTATAAAATAG--CTATCACCCCAGGAAATGTAACCTTCAGCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       365779 55 -   1458659 TTTTGCTTTCTGTATTATAAAATAG--CTATCACCCCAGGAAATTTAACCTTCAGCA
i manLeu1.NW_012105520v1    C 0 C 0
s cebCap1.NW_016107979v1       752130 55 +   1024465 TTTTGTTTTCCATATTATAAAATAC--CCACCACCCCAGGAAACTTAACCTTCACCA
i cebCap1.NW_016107979v1    I 239 C 0
s otoGar3.GL873530           29599168 54 +  36342412 TCTTGTGTTCTATATTATATATTTCTACCACTACCCCTGGAAACTTAATCTTCA---
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e saiBol1.JH378276            2790679 5917 +   3282555 I

a score=57926.000000
s hg38.chr15_KI270850v1_alt    273201 21 +    430880 CAAACTCTACAACAAGTTCAA
s panTro5.chrY               25744806 21 -  26350515 CAAACTCTACAACATGTTCAA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       371724 21 +    378907 CAAACTCTACAACAAGTTCAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102202429 21 + 121039945 CAAACTCAACATTATGTTCAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107025346 21 - 169600520 CAAACTCTACATAGTGTTCAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65373779 21 + 171882078 CAAACTCTACATAGTGTTCAA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3871996 21 +  24206276 CAAACTCTACATAGTGTTCAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       365834 21 -   1458659 CAAACTCTCCATAGTATTCAA
i manLeu1.NW_012105520v1    C 0 C 0
s cebCap1.NW_016107979v1       752185 21 +   1024465 AAAACTCTACATCATGTTCAA
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530           29599222 18 +  36342412 CAAACTCTCCA---TGTTCAG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e cerAty1.NW_012003658v1        43288 28 +    759272 I
e saiBol1.JH378276            2790679 5917 +   3282555 I

a score=12859.000000
s hg38.chr15_KI270850v1_alt    273222 18 +    430880 TGTTTGTTCAGTT--TAA--TA
s panTro5.chrY               25744827 16 -  26350515 TGTTT--TCAGTT--TAA--TA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       371745 18 +    378907 TGTTTGTTCAGTT--TAA--TA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102202450 18 + 121039945 AGTTTGTTCAGTT--TAA--TA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107025367 16 - 169600520 AATTTGTTCAGTT--TAA----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65373800 16 + 171882078 AATTTGTTAAGTT--TAA----
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012003658v1        43316 18 +    759272 TGTTTGTTCAGTT--TAATA--
i cerAty1.NW_012003658v1    I 28 C 0
s chlSab2.chr29               3872017 11 +  24206276 AATTTGTTCAG-----------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       365855 11 -   1458659 AATTTGTTCAG-----------
i manLeu1.NW_012105520v1    C 0 C 0
s cebCap1.NW_016107979v1       752206 18 +   1024465 AGTTTGTTCAGTT--TAA--TA
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530           29599240 16 +  36342412 -GTTTGTTCACTTAATA-----
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I
e saiBol1.JH378276            2790679 5917 +   3282555 I

a score=9828.000000
s hg38.chr15_KI270850v1_alt    273240 3 +    430880 TTT
s panTro5.chrY               25744843 3 -  26350515 TTT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       371763 3 +    378907 TTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102202468 3 + 121039945 TTT
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011056v1        36404 3 +   6271500 TTT
i macNem1.NW_012011056v1    N 0 C 0
s chlSab2.chr29               3872028 3 +  24206276 TTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       365866 3 -   1458659 TTT
i manLeu1.NW_012105520v1    C 0 C 0
s cebCap1.NW_016107979v1       752224 3 +   1024465 TTT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530           29599256 3 +  36342412 TTT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101 0 +   4111199 I
e cerAty1.NW_012003658v1        43334 0 +    759272 C
e macFas5.chr7               65373816 0 + 171882078 C
e rheMac8.chr7              107025383 0 - 169600520 C
e saiBol1.JH378276            2790679 5917 +   3282555 I

a score=1114641.000000
s hg38.chr15_KI270850v1_alt    273243 208 +    430880 AAGAGACAACC-----TATTTTGAAAGACATCTAAAATGATGACCAATATTTAAACCTATGCATTAATATTTT---TCAATCATATCCTTCACATTTTGTAATTTTGATAAGGT----TAA----GCTTTAGATCCATCTTGAAAAGATAAGCTTT----CTGTT-TGTCTTTAAAA----TATGACCCA-CAATATGCCTG-TTTTTAAACAGTGAATGATGCTCTAAAATCAC
s panTro5.chrY               25744846 208 -  26350515 AAGAGACAATG-----TATTTTGAAAGACATCTAAAATGATGACCAATATTTAAACCTATGCATTAATATTTT---TCAATCGTATGCTTTACATTTTGTAATTTTGATAAGGT----TAA----GTTTTAGATCCATCTTGAAAAGATAAGTTTT----CTATT-TGTCTTTAAAA----TATTACCTA-CAATATGCCTG-TTTTTAAACAGTGAATGATGTTCAAAAATCAC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       371766 209 +    378907 AAGAGACAACC-----TACTTTGAAAGACATCTAAAATGATGACCAATATTTAAACCTATGCATTAATATTTT---TCAATCGTATCCTTCACATTTTGTAATTTTGATAAGGT----TAA----GCTTTAGATCCATCTTGAAAAGATAAGTTTT----CTGTT-TGTCTTTAAAA----TATGACCCA-CAATATGCCTGTTTTTTAAACAGTGAATGATGCTCTAAAATCAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102202471 205 + 121039945 AAGAGACAATC-----TATTTTGAAAGACATCTAAA---ATGACCAATATTTAAACCTATGCATTAATATTTT---TCAATCACATGCTTTAAATTTTGTAATTTTGATAAGGT----TAA----ACTTTAGATCCATCTTGAAAAGATAAATTTT----CTATT-TGTCTTTAAAA----TATTACCTA-CAATATGCCTG-TTTTTAAACAGTGAATGGTGCTCAAAAATTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107025383 206 - 169600520 --GAGTCAACC-----TATTTTGAAAGACATTTAAAATGATGACCAATATTTAAATCTATGCATTAATATTTT---TCAATCACATGCTTTAAATTTTGTAATTTTGATAAGGT----TAA----GCTTTAGATCCATCTTGAAAAGATAAGTGTT----TTATT-TGTCTTTAAAA----TATGACCTA-CAATATGCCAG-CTTTCAAACAGTGAATGGTGCTCAAAAATCGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65373816 206 + 171882078 --GAGTCAACC-----TATTTTGAAAGACATTTAAAATGATGACCAATATTTAAACCTATGCATTAATATTTT---TCAATCACATGCTTTAAATTTTGTAATTTTGATAAGGT----TAA----GCTTTAGATCCATCTTGAAAAGATAAGTGTT----CTATT-TGTCTTTAAAA----TATGACCTA-CAATATGCCAG-CTTTTAAACAGTGAATGGTGCTCAAAAATCGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        36407 208 +   6271500 AAGAGTCAACC-----TATTTTGAAAGACATTTAAAATGATGACCAATATTTAAACCTATGCATTAATATTTT---TCAATCACATGCTTTAAATTTTGTAATTTTGATAAGGT----TAA----GCTTTAGATCCATCTTGAAAAGATAAGTGTT----TTATT-TGTCTTTAAAA----TATGACCTA-CAATATGCCAG-CTTTCAAACAGTGAATGGTGCTCAAAAATCGC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012003658v1        43334 196 +    759272 -----------------TTTAAGAAAGACATCTAAAATGATGACTAATATTTAAACCTATGCATTAATATTTT---TCAATAATATGCTTTATATTTTGTAATTTTGATAAGGT----TAA----ACTTTATATCCATCTTGAAAAGATAAGTTTT----CTATT-TGTCTTTAAAA----TATGACCCA-CAATATGCCTG-TTTTTAAACAGTGAATGATGCTCAAAAATCGC
i cerAty1.NW_012003658v1    C 0 I 145
s chlSab2.chr29               3872031 208 +  24206276 AAGAGTCAACC-----TATTTTGAAAGACATTTAAAATGATGACCAATATTTAAACCTATGCATTAATATTTT---TCAATCACATGCTTTACATTTTGTAATTTTGATAAGGT----TAA----GCTTTATATCCATCTTGAAAAGATATGTGTT----CTATT-TGTCTTTAAAA----TATGACCTA-CAATATGTCAG-CTTTCAAACAGTGAATGGTGCTCAAAAATCGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       365869 208 -   1458659 AACAGTCAATC-----TATTTTGAAAGACATTTAAAATGATGACCAATATTTAAACCTATGCATTAATATTTT---TCAATCACATGCTTTAAATTTTGTAATTTTGATAAGGT----TAA----GCTTTAGATCCATCTTGAAAAGATAAGTGTT----CTATT-TGTCTTTAAAA----TATGACCTA-CAATATGCCAG-CTTTTAAACAGTGAATGGTGCTCAAAAATCGC
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2796596 210 +   3282555 aaaagacaaTC-----TACCTGGAAAGACATCTAAAATGATGCCTAATATTTAAACCTATGCATTAATAGTTT---CAATTCACATCCTTTAAGTTTTGTAATTTTGATAAGGTTAACTAA----GCTTTATATCCATCTTGAAAAGATAAGTTTTCCTACTATT-TCTCTTTAAAATAATTATGACCTA-CAATATGCCAG-TTT----------AATGGTGCTCTAAAATCCC
i saiBol1.JH378276          I 5917 C 0
s cebCap1.NW_016107979v1       752227 210 +   1024465 AGGAGACAATC-----TACTTGGAAAGACATCTAAAATGATGCCTAATATTTAAACCTATGCATTAATATTTT---CAATTCACATGCTTTAAGTTTTGTAATTTTGATAAGGTTAAATAA----GCTTTATATCCACCTTGAAAAGATAAGTTTTCCTACTATT-TCTCTTTAAAATAAATATGACCTA-CAATATGCCAG-TTT----------AATGGTGCTCCAAAATCCC
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530           29599259 217 +  36342412 AAAAGACAATCTACAGTATTTTGAAAG--ATTTAAA---ATGACCAATTCTTAAACCTATATATTAATATTTTCAATCTTTCATACACTTCAAGTTTTCTGATTTTTATAAGGT----TAACTGGGCTTTGTATCTATCTTGAAAAGATAGTTTTC----TTACTATGGCTTTTTTA----AATGACCTGTTAATATGCCAA-TTTTTAAACATTAAATGATGCTCAAAAATCCC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I

a score=1550213.000000
s hg38.chr15_KI270850v1_alt    273451 273 +    430880 AATATAAATTCAGGCAGTGCTCCTTACATGGAAAGTTTAAGTACTTCTAACACTGC-TCTTTTTCA------CTTGTTATGAAA-------------------ACACAGAACAATTATCTAAGCATCTAATTATTCAGGTCCTTTGTTTCTCCTCCA---ATCTATTAGTTTTATAGTAATTTTAGGGCCTGTGAGGATGAAGCTGTCTGTGACAGCTACCACAAAGGTTACTATAGGTGGACAAATTTCAAACAAGTTTATCACCACTACCATCCCCACCATAAAACTGTCTCAATCAAGG
s panTro5.chrY               25745054 273 -  26350515 AATATAAATTCAGGCAGTGTTCCTTCCATGGAATGTTTAAGTGTTCCTAACACTGT-TCTTTTTCA------TTGGTTATGAAA-------------------ACACAGAACAATTATCTAAGCATCTAATTATTCAGGTCCTTTGTTTCTCCTCCA---TTCTGTTAGTTTTATACTAATTTCAAGGCCTGTGAGGATGAAGTTGTCTGTGACAGCTACCACAAAGGTTACCATTAGCAGACAAGTTTCCAACAAGTTTATCACCACTGCCATCCCCACCATAAAACTGTCTCAATCAAGG
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       371975 273 +    378907 AATATAAATTCAGGCAGTGCTCCCTACATGGAATGTTTAAGTACTTCTAACACTGC-TCTTTTTCA------CTTGTTATGAAA-------------------ACACAGAACAATTATCTAAGCATCTAATTATTCAGGTCCTTTGTTTCTCCTCCA---TTCTATTAGTTTTATAGTAATTTTAGGGCCTGTGAGGATGAAGCTGTCTGTGACAGCTACCACAAAGGTTACTATAGGTGGACAAATTTCAAACAAGTTTATCACCACTACCATCCCCACCATAAAACTGTCTCAATCAAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102202676 269 + 121039945 AATATAAATTCAGGCAGTGTTCCTTACATAGAATGT----GTGCTTCTAATACTGC-TCTTTTTCA------CTGGTTATGAAA-------------------ACACAGAACAATTATCTAAGCATCTAATTATTCAGGACCTTTGTTTCTCCTCTA---TTCTGTTAGTTTTATACTAATTTCAAGGCCTGTGAGGATGAAGTTGTCTGTGACAGCTACCACAAAGGTTACTATAAGCAGACAAATTTCCAACAAGTTTATCACCACTACCATCCCCACCATAAAACTGTCTCAATCAAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107025589 271 - 169600520 AATATAAATTCAGGCAGTGTTCCTTACATAGGATGTGTAATTGCTTCTAATACTGC-TCTTTTTCA------CCGGTTATAAAA---------------------ACAGAACAATTATCTAAGCATCTAATTATTCAGGTCCTTTGTTTCTCCTCCA---TTCTATTAGTTTTATAGTAATTTTAAGGCCTGTGAGGATGAAGTTGTCTGTGACAGCTACCACAAAGGTTACTATAAGCAGACAAATTTCAAATAAGTTTATCACCGCTACCATCCCCACCATAAAACTGTCTCAATCAAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65374022 272 + 171882078 AATATAAATTCAGGCAGTATTCCTTACATAGAATGTGTAATTGCTTCTAATACTGCTTTTTTTTCA------CCAGTTATGAAA---------------------ACAGAACAATTATCTAAGCATCTAATTATTCAGGTCCTTTGTTTCTTCTCCA---TTCTGTTAGTTTTATAGTAATTTTAAGGCCTGTGAGGATGAAGTTGTCTGTGACAGTTACCACAAAGGTTACTATAAGCAGACAAATTTCAAACAAGTTTATCACCGCTACCATCCCCACCATAAAACTGTCTTAATCAAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        36615 271 +   6271500 AATATAAATTCAGGCAGTGTTCCTTACATAGGATGTGTAATTGCTTCTAATACTGC-TCTTTTTCA------CCGGTTATGAAA---------------------ACAGAACAATTATCTAAGCATCTAATTATTCAGGTCCTTTGTTTCTCCTCCA---TTCTATTAGTTTTATAGTAATTTTAAGGCCTGTGAGGATGAAGTTGTCTGTGACAGCTACCACAAAGGTTACTGTAAGCAGACAAATTTCAAATAAGTTTATCACCGCTACCATCCCCACCATAAAACTGTCTCAATCAAGG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012003658v1        43675 270 +    759272 AATATAAATTCAGGCAGTGTTCCTTACATGGAATGTTTAAGGGTTTCTAACACTGT-TCTTTTTCA------CCGGTTATGAAA-------------------ACACAGAACAATTATCTACACATCTAATTATTCAGGTCCTTTGTTTCTCCTCCA---TTCTATTAGTTTTATAGTAATTTTAAGGCCTGTGAGGATGAAGTTGTCTGTG--AGTTACCACAAAGGTTACTATAAGCAGACAAATTTCAAACAGG-TTATCACCACTACCATCCCCACCATACAACTGTCTCAATCAAGG
i cerAty1.NW_012003658v1    I 145 N 0
s chlSab2.chr29               3872239 271 +  24206276 AATATAAATTCAGGCAGTGTTCCTTACATAGAATGTGTAATTGCTTCTAATACTGC-TCTTTTTCA------CCAGTTATGAAA---------------------ACAGAACAATTATCTAAGCATCTAATTATTCAGGTCCTTTGTTTCTCCTCCA---TTCTATTAGTTTTATAGTAATTTTAAGGCCTGTGAGGATGAAGTTGTCTGTGACAGTTACCACAAAGGTTACTATAAGCAGACAAATTTCAAACAAGTTTGTCACCGCTACCATCCACACCATAAAACTGTCTCAATCAAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       366077 271 -   1458659 AATATAAATTCAGGCAGTATTCCTTACATAGAATGTGTAATTGCTTCTAATACTGC-TCTTTTTCA------CCGGTTATGAAA---------------------ACAGAACAATTATTTAAGCATCTAATTATTCAGGTCCTTTGTTTCGCCTCCA---TTCTGTTAGTTTTATAGTAATTTTAAGGCCTGTGAGGATGAAGTTGTCTGTGACAGTTACCACAAAGGTGACCATAAGCAGACAAATTTCAAACAAGTTTATCACCGCTACCATCCCCACCATAAAACTGTCTCAATCAAGG
i manLeu1.NW_012105520v1    C 0 C 0
s saiBol1.JH378276            2796806 270 +   3282555 AATAGAAATTCAGGCAGTTTTCCACACATACAATGTTTACGTGCTTCTAGCACTGC-TCTTTCACC------ACAGTTAGGAAA-------------------ACACAGAACAATTATCTAAGCGTCTAATTATTCGGGTCCTTTGTTCCTCCTCCA---TTCTATTAGTTTTATAGTAATTGTAAGTCCTGTGAGGATGAAGTTGTCTGTGACAGCTACCATAAAGATTACTGTAAGTGGACAAATTTCAAGCAAGTTCATCACTGCTACCATCCCCACCATAAAACCGTCTTAATC---G
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       752437 267 +   1024465 AATATAAATTCAGGCAGTTTTCCAGACATACAATGTTTAAGTGCTTCTAGCACTGC-TCTTTCACC------ACAGTTATGAAA-------------------ACACAGAACAATTATCTAAGCATCTAATTATTCAGGTCCTTTGTTTCTCCTCCA---TTCTATTAGTTTTATA------GTAAGTCCTGTGAGGATGAAGTTGTCTGTGACAGCTACCATAAAGATTACTGTAAGTGGACAAACTTCAAGCAAGTTCATCACTGCTACCATCCCCACCATAAAACTGTCTTAATCGAGG
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530           29599476 284 +  36342412 AATAGGAG-TCAGGCAGTTTTCCTTA-ACAGGATGT----TTGCTTCTAACACAGC-TCTTTTTTAAAAACCACAGTTTTGAAAATTTTAAAGACTTAAGTACATACAAAAAAATTGTCCAAGCATCTAATTATTTAGGTCCTTTGTTTCTACTCCATTCTTCTATTAGTTTAGCAATGATTTTAAGGCTTGC-AGGATGAAGTTGTCCATGACAGCCAACATAAAGGTTACTGTAAACAGACAA-CTTCAAACAAGTTC---------ACCATCCCCACCATAAACTTGTCCTAACATGGG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101   0 +   4111199 I

a score=287700.000000
s hg38.chr15_KI270850v1_alt    273724 65 +    430880 GCAACACAATTCAATATTAGCCAAGACAACCT-CTTTACCTGTCACTGCTTAAGAAAAGGA-TTTTT
s panTro5.chrY               25745327 66 -  26350515 GCAACACAATTCAAGGTTAGCCAAGACAACCT-CTTTACCTGTCACTGCTTAAGAAAGGGATTTTTT
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       372248 65 +    378907 GCAACACAATTCAAGGTTAGCCAAGACAACCT-CTTTACCTGTCACTGCTTAAGAAAAGGA-TTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102202945 66 + 121039945 GCAACACAATTCAAGGTTAGCCAAGACAACCT-CTTTACCTGTCACTGCTTAAGAAAAGGATTTTTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107025860 64 - 169600520 GCAACACAATTCAAGGTTAG-CAAGGCAACCT-CTTTACCTGTCACTGTTTAAGAAAAGGA-TTTTT
i rheMac8.chr7              C 0 I 1
s macFas5.chr7               65374294 65 + 171882078 GCAACACAATTCAAGGTTAGCCAAGACAACCT-CTTTACCTGTCACTGTTTAAGAAAAGGA-TTTTT
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011056v1        36886 64 +   6271500 GCAACACAATTCAAGGTTAG-CAAGGCAACCT-CTTTACCTGTCACTGTTTAAGAAAAGGA-TTTTT
i macNem1.NW_012011056v1    C 0 I 1
s chlSab2.chr29               3872510 65 +  24206276 GCAACACAATTCAAGGTTAGCCAAGACAACCT-CTTTACCTGTCACTGTTTAAGAAAAGGA-TTTTT
i chlSab2.chr29             C 0 I 1
s manLeu1.NW_012105520v1       366348 66 -   1458659 GCAACACAATTCAAGGTTAGCCAAGACAACCTACTTTACCTGTCACTGTTTAAGAAAAGGA-TTTTT
i manLeu1.NW_012105520v1    C 0 I 1
s saiBol1.JH378276            2797076 60 +   3282555 AGAACACGACTCAAGGCTAACCAAGCCAACCT-CTTTATCTGTCACTGCTTAA-----GGA-TTTTT
i saiBol1.JH378276          C 0 I 8
s cebCap1.NW_016107979v1       752704 60 +   1024465 AGAACACGACTCAAGGCTAACCAAGCCAACCT-CTTTACCTGTCACTGCTTAA-----GGA-TTTTT
i cebCap1.NW_016107979v1    C 0 I 8
s otoGar3.GL873530           29599760 52 +  36342412 GCAACACAGCTCAAAGTTCATCAAGCCAACTT-CTTTGCCTGTGACTGCTTAA--------------
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1       334101  0 +   4111199 I

a score=1337945.000000
s hg38.chr15_KI270850v1_alt    273789 198 +    430880 GGTCTTATTTAGAAATAACTTTCCGTACCTATTTTTCTCCATAAATCCACT--GAGACCAATGTGTGGCTCTATCGCAAGCACCAGCAAGCAAAACTGCCTGCTAGAAGGTTCAGTTTTTGTATCTTTCCAAAT-GTAGAACACAGCTATCTTCAAGGATTTCATAAT------TTTTTGAAAATTGATGCACAAA---CTTCTT---GAAAG
s panTro5.chrY               25745393 196 -  26350515 GGTCTTATTTAGAAATAACTTTCTGTATCTATTTTTCTCCATAAATCCACT--GAGACCAATGTGTGCCTCTATCTCAAGCACCAGCAAGCAAAACTGCCTGTCAGTATGTTCAGTTTTTGTATCTTTCCAAAT-GTAGGGCACAGCTATCTTT--TGATATCATAAT------TTTTTGAAAACTGACACACAAA---CTTCTG---GAAAG
i panTro5.chrY              C 0 I 306
s gorGor5.CYUI01015946v1       372313 198 +    378907 GGTCTTATTTAGAAATAACTTTCTGTACCTATTTTTCTCCATAAATCCACT--GAGACCAATGTGTGGCTCTATCTCAAGCACCAGCAAGCAAAACTGCCTGCTAGAAGGTTCAGTTTTTGTATCTTTCCAAAT-GTAGAACACAGCTATCTTCAGAGATTTCATAAT------TTTTTGAAAATTGATGCACAAA---CTTCTT---GAAAG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102203011 198 + 121039945 GGTCTTATTTAGAAATAACTTTCTGTATCTATTTTTCTCCATAAATCCACT--GAGACCAATGTGTGCCTCTATCTCAAGCACCAGCAAGCAAAACTGCCTGCCAGTATGTTCAGTTTTTGTATCTTTCCAAAT-GTAGGGCACAGCTATTTTT---GATAACATAAT------TTTTTGAAAACTGATGCACAAA---CTTCTTCTGGAAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107025925 197 - 169600520 GGTCTTATTTAGAAGTAACTTTCTGTATCTATTTTTCTCCATAAATCCACT--GAGATCAATGTGTGGCTCTATCTCGAGCATCAGCAAGCAAAACTGCCTGCTAGAATGTTCAGTTTTTGTATCTTTCCAAAT-ATAGGACACAGCTATCTTCAGGGATTTCGT-AT------TATTTGAAAACTGATGCACAAA---CTTCTT---GAAAG
i rheMac8.chr7              I 1 C 0
s macFas5.chr7               65374360 197 + 171882078 GGTCTTATTTAGAAGTAACTTTCTGTATCTATTTTTCTCCATAAATCCACT--GAGATCAATGTGTGGCTCTATCTCGAGCATCAGCAAGCAAAACTGCCTGCTAGAATGTTCAGTTTTTGTATCTTTCCAAAT-ATAAGACACAGCTATCTTCAGGGATTTCGT-AT------TATTTGAAAACTGATGCACAAA---CTTCTT---GAAAG
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011056v1        36951 197 +   6271500 GGTCTTATTTAGAAGTAACTTTCTGCATCTATTTTTCTCCATAAATCCACT--GAGATCAATGTGTGGCTCTATCTCGAGCATCAGCAAGCAAAACTGCCTGCTAGAATGTTCAGTTTTTGTATCTTTCCAAAT-ATAGGACACAGCTATCTTCAGGGATTTCGT-AT------TATTTGAAAACTGATGCACAAA---CTTCTT---GAAAG
i macNem1.NW_012011056v1    I 1 C 0
s cerAty1.NW_012001384v1        31479 200 -   5160157 GGTCTTATTTAGAAGTAACTTTCTGTATCTATTTTTCTCCATAAATCCACT--GAGATCAATGTGTGGCTCTATCTCGAGCATCAGCAAGCAAAACTGCCTGCTAGAATGTTCAGTTTTTGTATCTTTCCAAAC-ATAGGACACAGCTATCTTCAGGGATTTCGT-AT------TATCTGAAAACTGATGCACAAACTTCTTCTT---GAAAG
i cerAty1.NW_012001384v1    N 0 C 0
s chlSab2.chr29               3872576 200 +  24206276 GGTCTTATTTAGAAGTAACTTTCTGTATCTATTTTCCTCCATAAATCCACT--GAGATCAATGTGTGGCTCTATCTCGAGCATCAGCAAGCAAAACTGCCTGCTAGAATGTTCAGTTTTTGTATCTTTCCAAAT-ATAGGACACAGCTATCTTCAGGGATTTCGT-AT------TATTTGAAAACTGATGCACAAACTTCTTCTT---GAAAG
i chlSab2.chr29             I 1 C 0
s manLeu1.NW_012105520v1       366415 200 -   1458659 GGTCTTATTTAGAAGTAACTTTCTGTATCTATTTTTCTCCATAAATCCACT--GAGATCAATGTGTGGCTCTATCTCGAGCATCAGCAAGCAAAACTGCCTGCTAGAATGTTCAGTTTTTGTATCTTTCCAAAC-ATAGGACACAGCTATCTTCAGGGATTTCGT-AT------TATTTGAAAACTGATGCACAAACTACTTCTT---GAAAG
i manLeu1.NW_012105520v1    I 1 C 0
s colAng1.NW_012116021v1      3813922 197 -   4111199 GGTCTTATTTAGAAGTAACTTTCTGTATCTATTTTTCTCCATAAATCCACT--GAGATCAATGTGTGGCTCTATCTCAAGCATCAGCAAGCAAAACTGCTTGCTAGAATGTTCAGTTTTTGTATCTTTCCAAAT-GTAGGACATAGCTATCTTCAGGGATTTCGT-AT------TATTTGAAAATTGATGCACAAA---CTTCTT---GAAAG
i colAng1.NW_012116021v1    n 0 C 0
s saiBol1.JH378276            2797144 203 +   3282555 TGTCTTATTTAGAAATAACTTTCTGTATCTATTTTTCTCCATAAATCCACT--GAGACCATTATGTGGCTCTATCTCAAGCACCAGCAAGCAAAACTGCCTGCCAGAATGGTCAGTTTTTGTATCTTTCCAAAT-GTAGGACACAGCTATCTTCAGGGATTTTGT-GATTTTTTTTTTTTTTAATTGATGCACAAA---CTTCTT---GTTGA
i saiBol1.JH378276          I 8 I 3
s cebCap1.NW_016107979v1       752772 197 +   1024465 TGTCTCATTTAGAAATAACTTTCTGTATCTATTTTTCTCCATAAATCCACT--GAGACCATTGTGTGGCTCTATCTGAAGCACCAGCAAGCAAAACTGCCTGCCAGAATGGTCAGTTTTTGTATCTTCCCAAAT-GTAGGACACAGCCATCTTCAGGGATTTCGT-GA------TTTTTTTAAATTGATGCACAAA---CTTCTT---GTCAA
i cebCap1.NW_016107979v1    I 8 I 3
s otoGar3.GL873530           29599812 183 +  36342412 ------------AAATAAATTTCTA----TATTTTTCTACATAAATCCACTAAGAGACCAATGTGTGGCTC--TCTCAAGCATCAGCCAGCAAAACTGCTTGACAGAATGCTCAGTTTTACTGTCTTTCCAAATGGTAGGACACAGCTATCTCCAGGGATTTC---AT------AATTTGGAAATTTTTGCACATA---CTTCTTGTTGAAGG
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=33943.000000
s hg38.chr15_KI270850v1_alt    273987 4 +    430880 TTCA
s panTro5.chrY               25745895 4 -  26350515 TTCA
i panTro5.chrY              I 306 C 0
s gorGor5.CYUI01015946v1       372511 4 +    378907 TTCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102203209 4 + 121039945 TTCA
i nomLeu3.chr6              C 0 I 300
s rheMac8.chr7              107026122 4 - 169600520 TTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65374557 4 + 171882078 TTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        37148 4 +   6271500 TTCA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        31679 4 -   5160157 TTCA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3872776 4 +  24206276 TTCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       366615 4 -   1458659 TTCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3814119 4 -   4111199 TTCA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2797350 4 +   3282555 TTCA
i saiBol1.JH378276          I 3 C 0
s cebCap1.NW_016107979v1       752972 4 +   1024465 TTCA
i cebCap1.NW_016107979v1    I 3 C 0
s otoGar3.GL873530           29599995 4 +  36342412 TTCA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=401315.000000
s hg38.chr15_KI270850v1_alt    273991 58 +    430880 GAGACACAGCAGCTG-TAATTATTCTGAAGGCTGGTTACGGGACACATTACCTTCATAC
s panTro5.chrY               25745899 58 -  26350515 GATATACAGCAGTTG-TAATTCTTCTGAAGGCTGCTTATGGGACACATTACTTTCATAC
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       372515 58 +    378907 GAGATACAGCAGCTG-TAATTCTTCTGAAGGCTGGTTATGGGACGCATTACCTTCATAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102203513 58 + 121039945 GATATACAGCAGTTG-TAATTCTTCTGAAGGCTGCTTATGGAACACATTACTTTCATAC
i nomLeu3.chr6              I 300 C 0
s rheMac8.chr7              107026126 58 - 169600520 GAGATAAAGCAGTTG-TGATTCTTCTGAAGGCTGGTTATGGGACACATTACTTTCAAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65374561 58 + 171882078 GAGATAAAGCAGTTA-TGATTCTTCTGAAGGCTGGTTATGGGACACATTACTTTCAAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        37152 58 +   6271500 GAGATAAAGCAGTTG-TGATTCTTCTGAAGGCTGGTTATGGGACACATTACTTTCAAAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        31683 58 -   5160157 GAGATAAAGCAGTTG-TGATTCTTCTGAAGGCTGGTTATGGGACACATTACTTTCAAAC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3872780 58 +  24206276 GAGATAAAGCAGTTG-TGATTCTTCTGAAGGCTGGTTATGGGACACATTACTTTCAAAC
i chlSab2.chr29             C 0 I 13
s manLeu1.NW_012105520v1       366619 58 -   1458659 GAGATAAAGCAGTTG-TGATTCTTCTGAAGGCTGGTTATGGGACACATTACTTTCAAAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3814123 58 -   4111199 GAGATAAAGCAGTTG-TGATTCTTCTGAAGGCTGGTTATGGGACACATTACTTTCAAAC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2797354 58 +   3282555 GAGATACAGCAGTTA-TAATTTTCCTGAAGGCCAGTTATGGGACACATTACTTTCATAC
i saiBol1.JH378276          C 0 I 1
s cebCap1.NW_016107979v1       752976 58 +   1024465 GAGATACAGCAGTTA-TAATTCTCCTGAAGGCCAGTTATGGGACACGTTACTTTCATAC
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530           29599999 57 +  36342412 GAGACACAGCAGTTGTTAATTCTTCTGGAGACCAATTATAGAACAA--TACTTTCACAC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=91157.000000
s hg38.chr15_KI270850v1_alt    274049 14 +    430880 TTTGCTGTTTAAGA
s panTro5.chrY               25745957 14 -  26350515 TTTGCTGTTCAATA
i panTro5.chrY              C 0 C 0
s gorGor5.CYUI01015946v1       372573 14 +    378907 TTTGCTGTTCAAGA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102203571 14 + 121039945 TTTGCTGTTCAATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107026184 14 - 169600520 TTTGCTGTTCAATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65374619 14 + 171882078 TTTGCTGTTCAATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        37210 14 +   6271500 TTTGCTGTTCAATA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        31741 14 -   5160157 TTTGCTCTTCAATA
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1       366677 14 -   1458659 TTTGCTGTTCAATA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3814181 14 -   4111199 TTTGCTCTTCAATA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2797413 14 +   3282555 TTTGCTGTTCAATA
i saiBol1.JH378276          I 1 C 0
s cebCap1.NW_016107979v1       753034 14 +   1024465 TTTGCTGTTCAATA
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530           29600056 14 +  36342412 TTTGCTGTTCAATA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29               3872838 13 +  24206276 I

a score=533011.000000
s hg38.chr15_KI270850v1_alt    274063 116 +    430880 AATGTGGGGTGGAGAATCAAGTAAACTGATAGAATTTCCAT-----------ATAAAATTCTAAGTGCTCTGAGAA---CAAAAGAAACTTAAAAT----------acac----acacacacacacac------acacacacacacacac
s panTro5.chrY               25745971 121 -  26350515 AATGTGGGCTGGAGAATAAAGTAAATTGAAAGAATTACCATATAA------AATAAAATTCTAAGTCCTCTGACAA---CAAAAGAAACTTAAAAT----------acac----acacacacacacac------acacacacacacacac
i panTro5.chrY              C 0 N 0
s gorGor5.CYUI01015946v1       372587 116 +    378907 AATGTGGGGTGGGGAATCAAGTAAACTGATAGAATTTCCAT-----------ATAAAATTCTAAGTGCTCTGAGAA---CAAAAGAAACTTAAAAT----------acac----acacacacacacac------acacacacacacacac
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102203585 112 + 121039945 AATGTGGGATGGAGAATAAAGCAAATTGGCAGAATTACCATATAA------AATAAAATTCGAAGTCCTCCGACAA---CAAAAGAAACTTAAAAT----------acac----acatacacacacac------acgcaca---------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107026198 102 - 169600520 AATGTGGGGTGGAGAAGCAAGTAAACTGACAGAATTTCCAT-----------ATAAAATTCTAAGTGCTCTGACAA---CAAAATCAACTTAAAAT----------acag----acacacacacacac------aT--------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65374633 112 + 171882078 AACGTGGGGTGGAGAATCAAGTAAACTGACAGAATTTCCAT-----------ATAAAATTCTAAGTGCTCTGACAA---CAAAATCAACTTAAAATacacacacacacac----acacacacacacac------ac--------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        37224 102 +   6271500 AATGTGGGGTGGAGAAGCAAGTAAACTGACAGAATTTCCAT-----------ATAAAATTCTAAGTGCTCTGACAA---CAAAATCAACTTAAAAT----------acag----acacacacacacac------aT--------------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        31755 100 -   5160157 AATGTGGGGTGGAGAAGCAAGTAAACTGACAGAATTTCCAT-----------ATAAAATTCTAAGTGCTCTGACAA---CAAAATCAACTTAAAAT----------ACAG----ACACACACACACAC----------------------
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3872851 106 +  24206276 AATGTGGGGTGGAGAAGCAAATAAACTGACAGAATTTCCAT-----------ATAAAATTCTAAGTGCTCTGACAA---CAAAATCAACTTAAAAT----------acagacacacacacacacacac------ac--------------
i chlSab2.chr29             I 13 C 0
s manLeu1.NW_012105520v1       366691 102 -   1458659 AACGTGGGGTGGAGAATCAAGTAAACTGACAGAATTTCCAT-----------ATAAAATTCTAAGTGCTCTGAAAA---CAAAATCAACTTAAAAT----------acag----acacacacacacac------ac--------------
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3814195 108 -   4111199 AATGTGGGGTGGAGAATCAAGTAAACTGACAGAATTTCCAT-----------ATAAAATTCTAAGTGCTCTAACAA---CAAAATCAACTTAAAAT----------acag----acacacacacacacacacgcac--------------
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2797427 103 +   3282555 AATGTGGG-TGAAGAATGAAGTAAATTGACAGAATTAGCATATAATGCCTTAAAAAAATTCTAACTGCTCTAGCAA---CAAAGGATACTTAAAAT----------GTGC----ACACAGG-----------------------------
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       753048 103 +   1024465 AATGTGGG-TGAAGAATGAAGTAAATTGACAGAATTAGCATATAATGCCTTAATAAAATTCTAACTGCTCTGACAA---CAAAAGATACTTAAAAT----------GTGC----ACACACG-----------------------------
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530           29600070 115 +  36342412 AATG-GAGATGAAGAATGAAGTAAACTGGCAAAATTACTATATACTACCTTAATAAAATTCTAAGTGCTCTGACCATATTAAAAATCACTAAAAAT----------ATAT----ATACAGAACTATAT------AC--------------
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=1611265.000000
s hg38.chr15_KI270850v1_alt    274179 291 +    430880 GGTTTTCCCTACTAATCATTTTA-AACTAAACAACCAAGTTGCTAAACCAGAGCCCACAAAAGCAGAGTCAAAGTTCTAACACTTGGTAAAAGAAAAATGCACACATAC-CCCTGTGAGCT------AAAAAAAAAATGCTTAAGTATTCAA----AGACAGC-AATTACAGCTACTGAGAACATCAC--TGTAAGCAAACTGAGGCAGAGAAAACAAACGTGCTGATGAGGATTTGAACCACCTAAGCTGCAGAAACCCACTGGATGGTTTCCTAGGTTCCGAG--TTGGCATTATCTTTCAGAACA
s gorGor5.CYUI01015946v1       372703 291 +    378907 GGTTTTCCCTACTAATCATTTTACAACTAAACAACCAAGTTGCTAAACCAGAGCCCACAAAAGCAGAGTCAAAGTTCTAACACTTGGTAAAAGAAAAATGCACACATAC-CCCTGTGAGCT------AAAAAAAAAATGCTTAAGTATTCAA----AGACAGC-AATTACAGCTACTGAGAACATCAC--TGTAAGCAAACTGAGGCAGAGAAAACAAACGTGCTGATGAGGATTTGAACCACCTAAGCTGCAGAAACCCACTGGATGGTTTCCTAGGTTCCGAG--TTGGCATTATCTTTCAGAAC-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102203697 287 + 121039945 -GTTTTCCCTGCTAATCATTTTA-----CAACAACCAAGTAGCTAACCCAGAGACCACAAAAGCAGAGTAAAAATTCTAACACTTGGTAAAATAAAAATGCACATATAT-CCCTGTCATCT---------AAAAATATGCTTAAGTATTCAAAGACAGACAGC-AATTACAGCTACTGAGAACATCAC--TGTAAGCAAACTGAGGCAGAGAAAACAAAGGTGCTGATGAGGATTTGAACCACCTAAGCTGCAGAAACCCACTAGATGGTTTCCTAGGTCCCGAG--TAGGCATTATCTTTCAGAACG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107026300 302 - 169600520 GTTTTTCCCTGCTAACCATTTTACAACTAAACAACCAAGTTGCTGACCCAGAGCCCACAAAAGGAGGGTCAAAGTTCTAACACTTGGTAAAATAAAAATGCATACATAC-CTGTGTGAGCTaaaaaaaaaaaaaaaaaGCTTGAGTATTCAAAGACAGACAGC-AATTACAGCTACTGAGAACATCAT--TGGAAGCAAACTGAGGCAGAGAAAACCAACATGCTGAAGAGGATTTGAACCACCTAAGCTGCAGAAACCCGCTGGATGGTTTCCTAGGTTCCGAG--CTGGCATTATCTTTCAGAACG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65374745 297 + 171882078 GTTTTTCCCTGCTAACCATTTTACAACTAAACAACCAAGTTGCTGACCCAGAGCCCACAAAAGGAGGGTCAAAGTTCTAACACTTGGTAAAATTAAAATGCATACATAC-CTGTGTGAGCT-----AAAAAAAAAAAAGCTTAAGTATTCAAAGACAGACAGC-AATTACAGCTACTGAGAACATCAT--TGTAAGCAAACTGAGGCAGAGAAAACCAACATGCTGAAGAGGATTTGAACCACCTAAGCTGCAGAAACCCGCTGGATGGTTTCCTAGGTTCCGAG--CTGGCATTATCTTTCGGGATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        37326 299 +   6271500 GTTTTTCCCTGCTAACCATTTTACAACTAAACAACCAAGTTGCTGACCCAGAGCCCACAAAAGGAGGGTCAAAGTTCTAACACTTGGTAAAATAAAAATGCATACATAC-CTGTGTGAGCT---AAAAAAAAAAAAAAGCTTGAGTATTCAAAGACAGACAGC-AATTACAGCTACTGAGAACATCAT--TGGAAGCAAACTGAGACAGAGAAAACCAACATGCTGAAGAGGATTTGAACCACCTAAGCTGCAGAAACCCGCTGGATGGTTTCCTAGGTTCCGAG--CTGGCATTATCTTTCAGAACG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        31855 292 -   5160157 GTTTTTCCCTGCTAACCATTTTACAACTAAACAACCAAGTTGCTGACCCAGAGCCCACAAAAGGAGGGTCAAAGTTCTAACACTTGGTAAAATAAAAATGCATACATAC-CTGTGTGAGCT----------AAAAAAAGCTTGAGTATTCAAAGACAGACAGC-AATTACAGCTACTGAGAACATCAT--TGGAAGCAAACTGAGGCAGAGAAAACCAACATGCTGAAGAGGATTTGAACCACCTAACCTGCAGAAACCCGCTGGATGGTTTCCTAGGTTCCAAG--CTGGCATTATCTTTCAGAACG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3872957 294 +  24206276 GTTTTGCCCTGCTAACCATTTTACAACTAAACAACCAAGTTGCTGACCCAGAGCCCACAAAAGAAGGGTCAAAGTTCTAACACTTGGTAAAATAAAAATGCATACATAC-CTGTGTGAGCT--------AAAAGAAATGCTTAAGTATTCAAAGACAGACAGC-AATTACTGCTACTGAGAACATCAT--TGGAAGCAAACTGAGGCAGAGAAAACCAACATGCTGAAGAGGAGTTGAACCACCTAACCTGCAGAAACCCACTGGATGGTTTCCTAGGTTCCGAG--CTGGCATTATCTTTCGGGATG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       366793 294 -   1458659 GTTTTTCCCTACTAACCATTTTACAACTAAACAACCAAGTTGCTGACCCAGAGCCCACAAAAGGAGGGTCAAAGTTCTAACACTTGGTAAAATAAAAATGCATACATAC-CTGTGTGAGCT--------AAAAAAAATGCTTAAGTATTCAAAGACAGACAGC-AATTACAGCTACTGAGAACATCAT--TGTAAGCAAACTGAGGCAGAGAAAACCAATATGCTGAAGAGGATTTGAACCACCTAAGCTGCAGAAACCCGCTGGATGGTTTCCTAGGTTCCGAG--CTGGCATTATCTTTTGGGATG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3814303 293 -   4111199 GTTTTTCCCTGCTAATCATTTTACAACTAAACAACCAAGTTGCTAACCCAGAGCCCACAAAAGGAGGGTC-AAGTTCTAAGACTTGGTAAAATAAAAATGCATACATAC-CCGTGTGGGCT--------AAAAAAAATGCTTAAGTATTCAAAGACAGACAGC-AATTACAGCTACTGAGAACATCAT--TGTAAGCAAACTGAGGCAGAGAAAACCAACATGCTGAAGAGGATTTGAACCACCTAACCTGCAGAAACCCGCTGGATGGTTTCCTAGGTTCCGAG--TTGGCATTATCTTTCAGGATG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2797530 289 +   3282555 ---GTTCCCTGTTAATCACTTTATAAATAGACAACCAAGTAAATAAGGTAGAGCCGACAAAAGCAGAGGAAAAATTCTAACACTTA-TAAAATAAAAATGTTTATATAC-CCATG----AT------AAAAAGAAAATGCTTCAGTAGTCAAACACAAGCAGCAAATTTCAGCTACTGAGAAAATGAT--TATAAGCAAACCGAGGCAGAGAAAACAAATGTGCTGATGACGATTTGAACCACCTAAGCTGCAGAAACCCACTGGATGGTTTCCTGGGTTCCAAG--TTGGCATTATCTTTCAGAACG
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       753151 290 +   1024465 ---GTTCCCTGCTAATCATTTTATAAATAGACAACCAAGCAGCTAAGGTAGAGCCGACAAAAGCAGAGGAAAAATTCTAACACTTGTTAAAATAAAAATGTTTATATAC-CCATG----AT------AAAAAGAAAATGCTTCGGTAGTCAAACACAAGCAGCAAATTTCAGCTACTGAGAACACCATTATATAAGCAAA--GAAGTAGAGAAAACAAATGTGCTGATGACGATTTGAACCACCTAAGCTGCAGAAACCCTCTGTATGGTTTCCTAGGTTCCGAG--TTGGCATTATCTTTCAGAACG
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530           29600185 295 +  36342412 --TATTCCTTGCTAATCATTTTACAAGTAAGCAATCAAGTACCTAACCCAGAACCCACAAAATCTGAGTAAAAGTATTAACACTTGGTTAAAGAAAAATGCATAAATATACCCTATGATTT---------AAAAAAATGCTTAAGTATCCAAACACAGGCAACAAATTACAGCTACTCAGAACATCAC--TCTAAGTGAACTGAGGCAGAGAAAACAAAGGTGCTAGAGAGGATTTGAACCACCTGAGCTGCAGAAACCCACTGGATAGTTTCTTTGGTTCTGAGTCTCAGAATGATCATCTAGAACA
i otoGar3.GL873530          C 0 I 142
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=461788.000000
s hg38.chr15_KI270850v1_alt    274470  92 +    430880 ATCT-------------------------------------------------------------------------------------TCTAGAAGAGATCACATAACACTGTTACAAAGGATCTGGAGAAAGGGACCCTGGCTTCATCACTGTGGCTCTCCAGTCATGCTTTACA
s gorGor5.CYUI01015946v1       372994  92 +    378907 ATCT-------------------------------------------------------------------------------------TCTAGAAGAGATCACGTAACACTGTTACAAAGGATCTGGAGAAAGGGACCCTGGCTTCATCACTCTGGCTCTCCAGTCATGCTTTACA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102203984  39 + 121039945 ATCT-------------------------------------------------------------------------------------TCTAGAA-----------------------------------------------------CACTCTGGGTCTCCAGTCATGCTTTACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107026602  92 - 169600520 ATCT-------------------------------------------------------------------------------------TCTAGAAGAGATCACATAACACTGTTACAAAGGCTCTGGAGAAAGGGACCCTGGCTTCATCACTCTGGCTCTCCAGGCATGCTTTACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65375042  92 + 171882078 ATCT-------------------------------------------------------------------------------------TCTAGAAGAGATCACATAACACTGTTACAAAGGCTCTGGAGAAAGGGACCCTGGCTTCATCACTCTGGCTCTCCAGGCATGCTTTACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        37625  92 +   6271500 ATCT-------------------------------------------------------------------------------------TCTAGAAGAGATCACATAACACTGTTACAAAGGATCTGAAGAAAGGGACCCTGGCTTCATCACTCTGGCTCTCCAGTCATGCTTTACA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        32147  92 -   5160157 ATCT-------------------------------------------------------------------------------------TCTAGAAGAGATCACATAACACTGTTACAAAGGATCTGAAGAAAGGGACCCTGGCTTCATGACTCTGGCTCTCCAGTCATGCTTTACA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3873251  92 +  24206276 ATCT-------------------------------------------------------------------------------------TCTAGAAGAGATCACATAACACTGTTACAAAGGATCTGAAGAAAGGGACCCTGGCTTTATCACTCTGGCTCTCCAGTCATGCTTTACA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       367087  92 -   1458659 ATCT-------------------------------------------------------------------------------------TCTAGAAGAGATCACATAACACTGTTACAAAGGATCTGGAGAAAGGGACCCTGGCTTCATCACTCTGGCTCTCCAGGCATGCTTTACA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3814596  92 -   4111199 ATCT-------------------------------------------------------------------------------------TCTAGAAGAGATCACATAACACTGTTACAAAGGATCTGAAGAGAGGGACCCTGGCTTCATCACTCTGGTTCTCCAGTCATGCTTTACA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2797819  90 +   3282555 ATCT-------------------------------------------------------------------------------------TCTACAAGAGATCACATGACACTGTTACAAAGGATCTGGAAT--GGGACCCTTGCTTTATCACTCTGGCTCTCCAGTCATGCTTTACA
i saiBol1.JH378276          C 0 C 0
s cebCap1.NW_016107979v1       753441  91 +   1024465 ATCT-------------------------------------------------------------------------------------TCTAGAAGAGAACACATAACACTGTTACAAAGGATCTGGAATG-GGGACCCTTGCTTTAAGACTGTGGCTCTCCAGTCATGCTTTACA
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873530           29600622 175 +  36342412 ATCTAGaacagtggttctcaacgtgtgggttgtgacccacaggaattgtattacagggctgtggcattaggaaggtagagaaccactgatctaGAAGAAATCACTTAACACTGTTAGAAAGGACTTGGGGAAAAGGACCCATCCTTTATCACTCTGGCTCTCCAGGAGTGCTTTA--
i otoGar3.GL873530          I 142 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=713333.000000
s hg38.chr15_KI270850v1_alt    274562 161 +    430880 TTTGGCAGTGACTATCTCCATTCAACTCAATTCCCTAACCCTGAACTAGCTGACATTTATCAAATACTGCCCTTTACCAGGTCTAAGTAAGTTTAACTCCCCCCACCCCCACCAA-AA-AAAAATCAAGATACTAAGGGATATACTATTCACAAAAGGGAAAC
s gorGor5.CYUI01015946v1       373086 161 +    378907 TTTGGCAGTGACTATCTCCATTCAACTCAATTCCCTAACCCTAAACTAGCTGACATTTATCAAATACTGCCCTTTACCAGGTCTAAGTAAGTTTAACTCCCCCCACCCCCACCAA-AA-AAAAATCAAGATACTAAGGGATATACCATTCACAAAAGGGAAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              107026694 161 - 169600520 TTTGGCAGTGACTATCTCCAGTCAACTCAATTCCCTACCCCTCAACTAGCTGACATTTATTAAATACTGCCCTTTATCAAGTCTAAGTAAGTTTAACCGCACCC-CCCACACTAAGAA-AAAAATCAAGATACTAAGGGATATACTATTCACAAAAGGGAAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65375134 161 + 171882078 TTTGGCAGTGACTATCTCCAGTCAACTCAATTCCCTACCCCTCAACTAGCTGACATTTATCAAATACTGCCCTTTATCAAGTCTAAGTAAGTTTAACTGTGCCC-CCCACACTAAGAA-AAAAATCAAGATACTAAGGGATATACTATTCACAAAAGGGAAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        37717 161 +   6271500 TTTGGCAGTGACTATCTCCAGTCAACTCAATTCCCTACCCCTCAACTAGCTGACATTTATTAAATACTGCCCTTTATCAAGTCTAAGTAAGTTTAACCGCACCC-CCCACACTAAGAA-AAAAATCAAGATACTAAGGGATATACTATTCACAAAAGGGAAAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        32239 161 -   5160157 TATGGCAGTGACTACCTCCAGTCAACTCAATTCCCTACCCCTCAACTAGCTGACATTTATTAAATACTGCCCTTTATCAAGTCTAAGTAAGTTTAACCGCACCC-CCCACACTAAGAA-AAAAATCAAGATACTAAGGGATATACTATTCACAAAAGGGAAAC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3873343 160 +  24206276 TTTGGCAGTGACTATCTCCGGTCAACTCAATTCCCTACCCCTCAACTAGCTGACA-TTATCAAATACTGCCCTTTATCAAGTCTAAGTAAGTTTATCTGTGCCC-CCCACACTAAGAA-AAAAATCAAGATACTAAGGGATATACTATTCACAAAAGGGAAAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       367179 161 -   1458659 TTTGGCAGTGACTATCCCCAGTCAACTCAATTCCCTACCCCTCAACTAGCTGACATTTATCAAATACTGCCCTTTATCAAGTCTAAGTAAGTTTAACTGTGCCC-CCCACACTAAGAA-AAAAATCAAGATACTAAGGGATATACTATTCACAAAAGGGAAAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3814688 161 -   4111199 TTTGGCAGTGACTATCTCCAGTCAACTCTATTCCCTACTCCTCAACTAGCTGACATGTATCAAATACTGCCCTTTATCAAGTCTAAGTAAGTTTAACCGCGCCC-CCCACACTAAGAA-AAAAATCAAGATACTAAGGGATATACTATTCACAAAAGGGAAAC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2797909 138 +   3282555 TTTGGCAGTGACTATCTTCATTCAACTCAATTCCCCACCCCTCAACTAGCCG----------------ACCCTTTTCCAAGTCTAAGTAAGTTTA--------A-CCACCACCAGCAACAAAAATCAAGATACTAAGGGATATACTATTCACAAAAGGGAAAC
i saiBol1.JH378276          C 0 I 3
s cebCap1.NW_016107979v1       753532 157 +   1024465 TTTGGCAGTGACTATCTTCATTCAACTCAATTCTCCACCCCTCAACTAGCTGACATTTATCAAACACTACCCTTTTCCAAGTCTAAGTAAGTTTAA-----CCA-CCACCACCAACAACAAAAATCAAGATACTAAGGGATATACTATTCACAAAAGGGAAAC
i cebCap1.NW_016107979v1    C 0 I 105
s otoGar3.GL873530           29600797 133 +  36342412 --------TGGCT-------TGCAATTCATTTGCCCACTCCTCAATGAGCTGACATTCACC--TTACTACTCTTT------TCCATCTAAGATTAACCCCCCCA-CCTCACCCCCCAA-AAAAGT-----TATTGAGGGATATACCATTCACCAAAGAGAAAC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6              102204023   0 + 121039945 C

a score=-4888.000000
s hg38.chr15_KI270850v1_alt    274723 2 +    430880 CT--
s gorGor5.CYUI01015946v1       373247 2 +    378907 CT--
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              107026855 2 - 169600520 AT--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65375295 2 + 171882078 AT--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        37878 2 +   6271500 AT--
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        32400 2 -   5160157 AT--
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3873503 2 +  24206276 AT--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       367340 2 -   1458659 AT--
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3814849 2 -   4111199 CT--
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2798050 1 +   3282555 A---
i saiBol1.JH378276          I 3 C 0
s otoGar3.GL873530           29600930 3 +  36342412 -TAA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       753689 105 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6              102204023 0 + 121039945 C

a score=553017.000000
s hg38.chr15_KI270850v1_alt    274725 116 +    430880 GTCTCCTCTTCATATACCTGTTCCTTTCAAGGAAGGGTATAAAAATGGGGA---TGAGGGAGGAT----AACCACTAGGAATTTGACCCTATATTATAAATTGGTCAGATAAATGAA---A---ATAAT----
s gorGor5.CYUI01015946v1       373249 116 +    378907 GTCTCCTCTTCATATACCTGTTCCTTTCAAGGAAGGGTATAAAAATGGGGA---TGAGGGAGGAT----AACCACTAGGAATTTGACTCTATATTATAAATTGGTCAGATAAATGAA---A---ATAAT----
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              107026857 120 - 169600520 GTATCTTCTTCATATATATGTTTCTTTCAAGGAAGGGTACAAAAATGGGGA---TGAGGGAGGATAGACAACCACCATGAATTTGACCCTGTATTATAAGTCAGTCAGATAAATGAA---A---ACGAT----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65375297 120 + 171882078 GTATCTTCTTCATATATATGTTCCTTTCAAGGAAGGGTACAAAAATGGGGA---TGAGGGAGGATAGACAACCACTATGAATTTGACCCTATATTATAAATCGGTCAGATAAATGAA---A---ACGAT----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        37880 120 +   6271500 GTATCTTCTTCATATATATGTTCCTTTCAAGGAAGGGTACAAAAATGGGGA---TGAGGGAGGATAGACAACCACCATGAATTTGACCCTATATTATAAATCAATCAGATAAATGAA---A---ACGAT----
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        32402 121 -   5160157 GTATCTTCTTCATATATATGT--CTTTCAAGGAAGGGTACACAAATGGGGA---TGAGGGAGGATAGACAACCACCATGAATTTGACCCTGTATTATAAATCAGTCAGATAAATGAAAACA---ACGAT----
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3873505 123 +  24206276 GTATCTTCTTCATATATATGTTTCTTTCAAGGAAGGGTACAAAAATGGGGA---TGAGGGAGGATAGACAACCACTATGAATTTGACCCTATATTATAAATCGGTCAGATAAATGAA---AACGACGAT----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       367342 120 -   1458659 GTATCTTCTTCATATATATGTTCCTTTCAAGGAAGGGTACAAAAATGGGGA---TGAGGGAGGACAGACAACCACTATGAATTTGACCCTATATTATAAATCGGTCAGATAAATGAA---A---ACGAT----
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3814851 122 -   4111199 GTATCTTCTTCATATATATGTTCCTTTCAAGGAAGGGTACAAAAATGGGGA---TGAGGGAGGATAGACAACCACTATGAATTTGACCCTATATTATAAATCGGTCAGATAAATGAA-ACA---ATGAT----
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2798051 114 +   3282555 GTCTCCTCTTCAGGTATCTGTTCCTTTCAAGGAAGGGTATAAAA------A---TGAGAGAAGATAGATAACCACTAAGGCTTTGACCCTATATTATAAATTGGTCAGATAAATGAA---A---ACAAT----
i saiBol1.JH378276          C 0 I 3
s cebCap1.NW_016107979v1       753794 114 +   1024465 GTCTCCTCTTCAGGTATCTGTTCCTTTCAAGGAAGGGTATAAAA------A---TGAGAGAAGATAGATAATCATTAAGAATTTGACCCTATATTATAAATTGGTCAGATAAATGAA---A---ACAAT----
i cebCap1.NW_016107979v1    I 105 I 22
s otoGar3.GL873530           29600933 122 +  36342412 GGGTCCTCTTCATATATTTGTTCCTTTCAAGGAAGGGCATAAAAATGGGGACCCTGCGGCAAGATAGATAAGCACTAGGATTTTGAC-----ATTATAAACTAGCCAGATAAATGAA---A---ACAACGATT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6              102204023   0 + 121039945 C

a score=39294.000000
s hg38.chr15_KI270850v1_alt    274841 10 +    430880 TCCTCTGGAC
s gorGor5.CYUI01015946v1       373365 10 +    378907 TCCTCTGGAC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              107026977 10 - 169600520 TCCTCGGAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65375417 10 + 171882078 TCCTCTGGAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        38000 10 +   6271500 TCCTCGGAAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        32523 10 -   5160157 TCCTCGGGAC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3873628 10 +  24206276 TCCTCGGGAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       367462 10 -   1458659 TCCTCTGGAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3814973 10 -   4111199 TCCTCTGGAC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2798168 10 +   3282555 CCTTCTGGAC
i saiBol1.JH378276          I 3 C 0
s otoGar3.GL873530           29601055 10 +  36342412 TCTTCCAGAC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       753908 22 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6              102204023  0 + 121039945 C

a score=181731.000000
s hg38.chr15_KI270850v1_alt    274851 66 +    430880 TCAAAGtgatatggctctgaaaacgggagaaacatcggggtcctttgtctcacgccagttaaacga
s gorGor5.CYUI01015946v1       373375 66 +    378907 TCAAAGtgatatggctctgaaaacgggagaaacatcggggtcctttgtctcatgccagttaaacga
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              107026987 66 - 169600520 TGAAATtgatatggctctgatgactggagaaacatcggggtcctctggctcacatcagttaaacaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65375427 66 + 171882078 TGAAATtgatatggctctgatgactggagaaacatcagggtccttgggctcacatcagttaaacaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        38010 66 +   6271500 TGAAATtgatatggctctgatgactggagaaacatcagggtcctcgggctcacatcagttaaacaa
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        32533 66 -   5160157 TGAAATtgatatggctctgatgactggagaaacatcggggtcctttggctcatatcagctaaacaa
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3873638 66 +  24206276 TGAAATtgatatggctctgatgactggagaaacatcggggtccttcggctcacaccagttaaacga
i chlSab2.chr29             C 0 I 1402
s manLeu1.NW_012105520v1       367472 65 -   1458659 TGAAATtgatatggctctgatgactggagaaacat-ggggtccttcggctcacacctgttaaacaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3814983 66 -   4111199 TGAAAGtgatatggctctgatgactagagaaacatcgggatccttcagctcacaccagttaaacaa
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       753908 22 +   1024465 I
e otoGar3.GL873530           29601065  0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6              102204023  0 + 121039945 C
e saiBol1.JH378276            2798178  0 +   3282555 C

a score=1523833.000000
s hg38.chr15_KI270850v1_alt    274917 655 +    430880 catggacacacaggagtggttttaaggagcagaaagtttaatagacaagaaagaagaaagg--ctccctgcggtacagaaaaa--gggggtctgaacagagaaaaagccccgtgtgtggcagaacagtactcggttatattgggaggctggaggaggtggtgtctgatttgcacagggcccagggcattggtttgaccaggcaggtcattcatgtagcccgagaaaaacgtggccctcccaccctagccttttaatatgcaaatgtaggtcaccatgttgtcctgcacacatggggtcatctggaggtgtcaccttgaggtggtgactagaagaagagggtgggaatctccatgttgaatggacacagtttctaagcgctggcatttgcatatcaaagcttgGCAgcctgtagtcccagctactcaggag----gctgaggcaggagattcacttgaacctgggaggcagaggctgcagtgagctgagatcacaccactgcactccagcctgggtgacagagcgagattccgtctcc--aaaaaaaagataaaaagaaaagaaaaagaaatgtttctggagttgtttctattaaaagggaaagccttactgaggcctccttaccctctctatctgcctagtataatttctgaataactcctCTAT
s gorGor5.CYUI01015946v1       373441 657 +    378907 catggacacacaggagaggttttaaggagcagaaagtttaataggcaagaaagaagaaagg--ctccctgtggtacagaaaaagggggggtctgaacagagaaaaagccccgtgtgtggcagaacagtactcggttatattgggaggctggaggaggtggtgtctgatttgcacagggcccagggcattggtttgaccaggcaggtcattcatgtagcccgaggaaaacgtggccctcccaccctagccttttaatatgcaaatgtaggtcaccatgttgtcctgcacacgtggggtcatctggaggtgtcaccttgaggtggtgactagaagaagagggtgggaatctccatgttgaatggacacagtttctaagcgctggcatttgcatatcaaagcttgGCAgcctgtagtcccagctactcaggag----gctgaggcaggagattcacttgaacctgggaggcagaggctgcagtgagctgagatcacaccactgcactccagcctgggtgacagagcgagactccgtctcc--aaaaaaaagataaaaagaaaagaaaaagaaatgtttctggagttgtttctactaaaagggaaagccttactgaggcctccttaccctctctatctgcctagtataatttctgaataactcctCTAT
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              107027053 652 - 169600520 cttggacgcagaggagtggttttaaggagcagaaagtttaataggcaagaaagaagaaagg--cttccccttgtacagagaaagcggggctccgaacagagaaaaagccccgtgtgcagcagaacagtacttggttatattgggaggctggaggaggtggtgtctgatttgcatagggcccagggaattggtttgaccaggcatgtcattcatgtagcccaagaaaaacgtggccctcccactctagccttttaatttgcaaatgtaggtcaccatattgtcctgcacaca--gggtcttctggaggtgtcaccttgaggcggtgacttgaagaagagggcgggaattttcatgttgaatggactcagtttccaagtgctgacatttgcatattaaagcttgGCAgcctggagtcccagctactcaagagtccagctgaggcaggagatgcaactgtacctgggaggaggaggttgcagtgagccgagatcacatcactgcactaaagcctggtcgacagagtgagactccgtttccaaaaaaaaaag---------aaaagaaaagaaatgtttcgggagttgtttctattaaaagggaaagccttactgaggactcctttccctctctatctgcctaatataatttctgaataactcctCTAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65375493 647 + 171882078 catggatgcagaggagtggttttaaggagcagaaagtttaataggcaagaaagaagaaagg--ctcccccctgtacagagaaagcagggctccgaacagagaaaaagccccatgtgcagcagaaaagtacttggttatattgggaggctggaggaggtggtgtctgatttgcattgggcccagggaatcggtttgaccaggcatgtcattcatgtagcccaagaaaaacgtggccctcccactctagccttttaatttgcaaatgtaggtcaccatattgtcctgcacaca--gggtcttctggaggtgtcaccttgaggcggtgactagaagaagagggcgggaattttcatgttgaatggactcagtttccaagtgctgacatttgcatattaaagctcgGCAgcctgcagtcccagctactcaggag----gctgaggcaggagatgcaactataactgggaggaggaggttgcagtgagccgagatcacatcactgcactaaagcctggtctacagagtgagactccgtctcc-aaaaaaaaag---------aaaagaaaagaaatgtttcaggagttgtttctattaaaagggaaagccttactgaggactcctttccctctctatctgcctaatataatttctgagtaactcctCTAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        38076 651 +   6271500 catggacgcagaggagtggttttaaggagcagaaagtttaataggcaagaaagaagaaagg--ctcccccctgtacagagaaagcggggctccgaacagagaaaaagccccatgtgcagcagaaaagtacttggttatattgggaggctggaggaggtggtgtctgatttgcatagggcccagggaatcggtttgaccaggcatgtcattcatgtagcccaagaaaaacgtggccctcccactctagccttttaatttgcaaatgtaggtcaccatattgtcctgcacaca--gggtcttctggaggtgtcaccttgaggcggtgactagaagaagagggcgggaattttcatgttgaatggactcagtttccaagtgctgacatttgcatattaaagcttgGCAgcctggagtcccagctactcaagagtccagctgaggcaggagatgcaactgtacctgggaggaggaggttgcagtgagccgagatcacatcactgcactaaagcctggtctacagagtgagactccgtttcc-aaaaaaaaag---------aaaagaaaagaaatgtttcgggagttgtttctattaaaagggaaagccttactgaggactcctttccctctctatctgcctaatataatttctgaataactcctCTAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        32599 650 -   5160157 catggacacagaggagtggttttaaggagcagaaagtttaataggcaagaaagaagaaagg--cttccccttgtacagagaaagcggggctcagaacagagaaaaagccccgtgtgcagcagaaaagtacttggttatattgggaggctggaggaggtggtgtctgatttgcatagggcccagggaattggtttgaccaggcatgtcattcatgtagcccaagaaaaacgtggccctcccactctagccttttaatttgcaaatgtaggtcaccatattgtcctgcacaca--gggtcttctggaggtgtcaccttgaggcggtgacttgaagaagagggcgggaattttcatgttgaatggactcagtttccaagtgctgacatttgcatattaaagcttgGCAgcctggagtcccagctactcaagagtccagctgaggcaggagatgcaactgtacctgggaggaggaggttgcagtgagccgagatcacatcactgcactaaagcctggttgacagagtgagactccgtctcc--aaaaaaaag---------aaaagaaaagaaatgtttcaggagttgtttctattaaaagggaaagccttactgaggactcctttccctctctatctgcctaatataatttctgaataactcctCTAT
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1       367537 645 -   1458659 catggatgcagaggagtggttttaaggagcagaaagtttaataggcaagaaagaagaaagg--ctcccccctgtacagagaaagcggggctccgaacagacaaaaagccccgtgtgcagcagaaaagtacttggttatattgggaggctggaggaggtggtgtctgatttgcattgggcccagggaatcagtttgaccaggcatgtcattcatgtagcccaagaaaaacgtggccctcccactctagccttttaatttgcaaatataggtcaccatattgtcctgcacaca--gggtcttctggaggtgtcaccttgaggcggtgactagaagaagagggcgggaattttcatgttgaatggactcagtttccaagtgctgacatttgcatattaaagctcgGCAgcctgcagtcccagctactcaggag----gctgaggcaggagatgcaactatacctgggaggaggaggttgcagtgagctgagatcacatcactgcactaaagcctggtcgacagagtaagactccgtctcc---aaaaaaag---------aaaagaaaagaaatgttttgggagttgtttctattaaaagggaaagccttactgaggactcctttccctctctatctgcctaatataatttctgagtaactcctCTAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3815049 645 -   4111199 catggatgcagaggagtggttttaaggagcagaaagtttaataggcaagaaagaagaaaggcccccccccctgtacagagaaagcagggctccgaacagagaaaaagccctgtgtgcagcagaaaagtacttggttatattgggaggctgaaggaggtggtgtctgatttgcacagggcccagggaatcggtttgaccaggcatgtcattcatgtagcccaagaaaaacgtggccctcccaccctagcattttaatttgcaaatgtaggtcactatattgtcctgcacaca--gggtcttctggaggtgtcaccttgaggtggtgact---agaagagggcgggaattttcatgttgaatggactcagtttccaagtgctgccatttgcatattaaagcttgGCAgcctggaatcccagctactcaggag----gctgaggcaggagatgcaactgtacctgggaggaagaggttgcagtgagctgagatcacatcactgcactaaagcctggtcgacagagtgagactccgtctcc--aaaaaaaag---------aaaagaagagaaatgtttcaggagttgtttctattaaaagggaaagccttactgaggactccttaccgtctctatctgcctaatataatttctgaataactcctCTAT
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       753908  22 +   1024465 I
e otoGar3.GL873530           29601065   0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29               3873704 1402 +  24206276 I
e nomLeu3.chr6              102204023   0 + 121039945 C
e saiBol1.JH378276            2798178   0 +   3282555 C

a score=20545.000000
s hg38.chr15_KI270850v1_alt    275572  9 +    430880 TA-AAAGTAC
s gorGor5.CYUI01015946v1       374098  9 +    378907 TA-AAAGTAC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              107027705 10 - 169600520 AATAAAGTAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65376140  9 + 171882078 TA-AAAGTAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        38727 10 +   6271500 AATAAAGTAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        33249 10 -   5160157 AATAAAGTAC
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1       368182  9 -   1458659 TA-AAAGTAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3815694  9 -   4111199 TA-AAAGTAC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2798178  9 +   3282555 TG-AATGTAC
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530           29601065  9 +  36342412 TG-AAAGTAC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       753908 22 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29               3873704 1402 +  24206276 I
e nomLeu3.chr6              102204023  0 + 121039945 C

a score=1024708.000000
s hg38.chr15_KI270850v1_alt    275581 250 +    430880 CACTGAGGTGCTTAATATGACATTTCTGATATTTCCCAATGCTCCTCCACAAATTCAATTTGGAAAGGTAATCTGTTCCAGGAGGGCAAACCAAAGAAAAAGTCCTAGGCTCCTGAGTCAAGGCTTGTTTCT--TTCCTTTGTACAAGCT----------------GACTACTTTTTAATCATAGTAAAAATGAGAAAAATGCAAGATGAAGTTAACAGCATTGCTTTATTTCCCATGAAAAGCTGTTATAAAGCATTCTCAAAATAA
s gorGor5.CYUI01015946v1       374107 250 +    378907 CACTGAGGTGCTTAATATGACATTTCTGATATTTCCCAATGCTCCTCCACAAATTCAATTTGGAAAGGTAATCTGTTCCAGGAGGGCAAACCAAAGAAAAAGTCCTAGGCTCCTGAGTCAAGGTTTGTTTCT--TTCCTTTGTACAAGCT----------------GACTACTTTTTAATCATAGTAAAAATGAGAAAAATGCAAGATGAAGTTAACAGCATTGCTTTATTTCCCATGAAAAGCTGTTATAAAGCATTCTCAAAATAA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              107027715 256 - 169600520 CACTTAGGTGCTTCATATGACAGTTCTGATATTTCCCAATGCTCCTCCACAAATTAAATTTGGAAAGGTAATCCGTCCCAGGAGGGCAAACCAAAGAAAAAGTCCTAGGCTCCTGAGTCAAGGTTTGTTTAT--TTCCTTTCTACAGGTT----------TGACTGGACTACTTTTTAATCACAGTAAAAATGACAAAAATGCAAGATGAAGTTAACAGCATACATTTATTTCCCATGAAAAGCTGTTATAAAGCATTCTCAAAATAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65376149 255 + 171882078 CACTTAGGTGCTTCATATGACAGTTCTGATATTTCCCAATGCTCCTCCACAAATTAAATTTGGAAAGGTAATCCGTCCCAGGAGGGCAAACCAAAGAAAAAGTCCTAGGCTCCTGAGTCAAGGTTTGTTCA---TTCCTTTCTACAGGTT----------TGACTGGACTACTTTTTAATCACAGTAAAAATGACAAAAATGCAAGATGAAGTTAACAGCATAGATTTATTTCCCATGAAAAGCTGTTATAAAGCATTCTCAAAATAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        38737 255 +   6271500 CACTTAGGTGCTTCATATGACAGTTCTAATATTTCCCAATGCTCCTCCACAAATTAAATTTGGAAAGGTAATCCGTCCCAGGAGGGCAAACCAAAGAAAAAGTCCTAGGCTCCTGAGTCAAGGTTTGTTCA---TTCCTTTCTACAGGTT----------TGACTGGACTACTTTTTAATCACAGTAAAAATGACAAAAATGCAAGATGAAGTTAACAGCATACATTTATTTCCCATGAAAAGCTGTTATAAAGCATTCTCAAAATAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        33259 254 -   5160157 CACTTAGGTGCTTCATATGACAGTTCTGGTATTTCCCAATGCTCCTCCACAAATTAAATTTGGAAAGGTAATCCGTCCCAGGAGGGCAAACCAAAGAAAAAGTCCTAGGCTCCTGAGTCAAGGTTTGTTTAT--TTCCTTTCTACAGGTT----------TGACTGGACTACTTTTTCATCAC--TAAAAATGACAAAAATGGAAGATGAAGTTAACAGCATACATTTATTTCCCATGAAAAGCTGTTATAAAGCATTCTCAAAATAA
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1       368191 256 -   1458659 CACTTAGGTGCTTCATATGACAGTTCTGATATTTCCCAATGCTCCTCCACAAATTAAATTTGGAAAGGTAATCCATCCCAGGAGGGCAAACCAAAGAAAAAGTCCTAGGCTCCTGAGTCAAGGTTTGTTCAT--TTCCTTTCTACAGGTT----------TGACTGGACTACTTTTTAATCACAGTAAAAATGACAAAAATGCAAGATGAAGTTAACAGCATAGATTTATTTCCCATGAAAAGCTGTTATAAAGCATTCTCAAAATAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3815703 252 -   4111199 CACTTAGGTGCTTAATATGACAGTTCTGGTATTTCCCAATGCTCCTCCACAAATTAAATTTGGAAAGGTAATCTGTCCCAGGAGGGTAAACCAAAGAAAAAGTCCTAGGCTCCTGAATCAAGGTTTAT------TTCCTTTGTACAAGTT----------TGACTGGACTACTTTTTAATCATAGCAAAAATGAGAAAAATGCAAGATGAAGTTAACAGTATAGATTTATTTCCCATGAAAAGCTGTTATAAAGCATTCTCAAAACAA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2798187 254 +   3282555 CACTTAGGTGCTTAACATGACAGTTCTGATATTTCCAAATGGTTCTCCACGAATTCAGTTTGGAAAGGTAATCTGTCCCAGGAGGGCAAACCAAAGAGAAAGTCTTAGGCTCCTTAGTCCAGGTTTGTTTAT--TTCCATTGTACGACTT----------TGACTGGACTACTTTTTAATCACAGTAAAGACTAGAAAAATGCAAGATGAAGTTAACAGCATTGCTTTGTTTCCCATGAAAAGCTGT--TAAAGCATTTTCAAAATGA
i saiBol1.JH378276          C 0 I 1046
s cebCap1.NW_016107979v1       753930 254 +   1024465 CACTTAGGTGCTTAACATGACAGTTCTGATATTTCCAAATGGTTCTCCACGAATTCAATTTGGAAAGGTAATCTGTCCCAGGAGGGCAAACCAAAGAGAAAGTCTTAGGCTCTTTAGTCCAGGTTTGTTTAT--TTCCATTGTACAACTT----------TGACTGGACTACTTTTTAATCACAGTAAAGACTAGAAAAATGCAAGATGAAGTTAACAGCATTGCCTTGTTTCCCATGAAAAGCTGT--TAAATCATTTTCAAAATGA
i cebCap1.NW_016107979v1    I 22 C 0
s otoGar3.GL873530           29601074 249 +  36342412 TACTTAGGTGTTCACCATGACAGTTGTGATATTTCCAAATGTTTCTCCATATGTTCAGTTTGGGAAAATAATCTGTCCCATGAGGGCAAACCAAAGAGAAGGCCTTCAGTTCCTCAGTCAAGATTTGTTCATTATTTCCTTGTACAACTTTGTCTGGATTTGTCTGGACTACTTTTT-ATCAAGGTAAAGACTATAAAA-------ATGAAGTTAAGAGCACTGCCTCATTTCCCATGAAAAG-----------CATTTTCAAAATAA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29               3873704 1402 +  24206276 I
e nomLeu3.chr6              102204023   0 + 121039945 C

a score=60804.000000
s hg38.chr15_KI270850v1_alt    275831 16 +    430880 ACTGTTATTCAGCCAC
s gorGor5.CYUI01015946v1       374357 16 +    378907 ACTGTTATTCAGCCAC
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              107027971 16 - 169600520 AGTGTTATTCAGCCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65376404 16 + 171882078 AGTGTTATTCAGCCAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        38992 16 +   6271500 AGTGTTATTCAGCCAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        33513 16 -   5160157 AGTGTTATTCAGCCAC
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1       368447 16 -   1458659 AGTGTTATTCAGCCAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3815955 16 -   4111199 AGTGTTATTCAGCCAC
i colAng1.NW_012116021v1    C 0 C 0
s cebCap1.NW_016107979v1       754184 16 +   1024465 AGTGTTATTGAGCCAC
i cebCap1.NW_016107979v1    C 0 I 297
s otoGar3.GL873530           29601323 16 +  36342412 TGTGTTATTCAGCCAC
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29               3873704 1402 +  24206276 I
e nomLeu3.chr6              102204023  0 + 121039945 C
e saiBol1.JH378276            2798441 1046 +   3282555 I

a score=3276.000000
s hg38.chr15_KI270850v1_alt    275847 1 +    430880 A
s gorGor5.CYUI01015946v1       374373 1 +    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              107027987 1 - 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65376420 1 + 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        39008 1 +   6271500 A
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        33529 1 -   5160157 A
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1       368463 1 -   1458659 A
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3815971 1 -   4111199 A
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873530           29601339 1 +  36342412 A
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       754200 297 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29               3873704 1402 +  24206276 I
e nomLeu3.chr6              102204023 0 + 121039945 C
e saiBol1.JH378276            2798441 1046 +   3282555 I

a score=1112775.000000
s hg38.chr15_KI270850v1_alt    275848 279 +    430880 AATGACACCATCACTTTTTTATTCATAGGGCACAGTATCGC--TGCCAAAGAGCTTTCCTCTATATGCTCTCTTGCAGGGCAAAAAATATTATCTATGTTATACAGAAACACAGT-AAAAAAAGTGATTTACTTAAGGTCCTAACTACTAAATAAAAGCTAAACTACTCACTTCCTCCTAGATTCAGAGAGAGCTCCAACATTTTCTAAAATTTGGTATCTTGTTGTT-GGGGTAGGCACTTTTTGGCAATAATGAATAGACATTTAATTAGCCAATC----AAAAA
s gorGor5.CYUI01015946v1       374374 280 +    378907 AATGACACCATCACTTTTTTATTCATAGGGCACAGTATCGC--TGCCAAAGAGCTTTCCTCTATATGCTCTCTTGCAGGGCAAAAAATATTATCTATGTTATACAGAAACACAGT-AAAAAAAGTGATTTACTTAAGGTCCTAACTACTAAATAAAAGCTAAACTACTCACTTCCTCCTAGATTCAGAGAGAGCTCCAACATTTTCTAAAATTTGGTATCTTGTTGTT-GGGGTAGGCACTTTTTGGCAATAATGAATAGACATTTAATTAGCCAATC---AAAAAA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              107027988 282 - 169600520 AATGACATCATCACTTTTTTATTCATAGGGCACAGTATCAT--TGCCAAAGAGTTTTCCTCTATATGTTCTCTTGCAGGGCAAAAAATATTATCTATTTTATACAGAAACACAGT-AAAAAAAGTGATTTACTTAAGGTCCTAACTACTAAATAAAAGCTAAACTATTCACTTCCTCCTAGATTCAGAGAGAGCTCCAACATTTTCTAAAATTTAGTATCTTGTCATT-GGGGTAGGCACTCTTTGGCAAAAATGAATAGACATTTAATTAGTCAACC-AAAAAAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65376421 279 + 171882078 AATGACATCATCACTTTTTTATTCATAGGGCACAGTATCGT--TGCCAAAGAGCTTTCCTCTATATGTTCTCTTGCAGGGCAAAAAA---TATCTATTTTATACAGAAACACAGT-AAAAAAAGTGATTTACTTAAGGTCCTAACTACTAAATAAAAGCTAAACTATTCACTTCCTCCTAGATTCAGAGAGGGCTCCAACATTTTCTAAATTTTAGTATCTTGTCATT-GGGGTAGGCACTTTTTGGCAAAAATGAATAGACATTTAATTAGTCAACC-AAAAAAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        39009 282 +   6271500 AATGACATCATCACTTTTTTATTCATAGGGCACAGTATCAT--TGCCAAAGAGTTTTCCTCTATATGTTCTCTTGCAGGGCAAAAAATATTATCTATTTTATACAGAAACACAGT-AAAAAAAGTGATTTACTTAAGGTCCTAACTACTAAATAAAAGCTAAACTATTCACTTCCTCCTAGATTCAGAGAGAGCTCCAACATTTTCTAAAATTTAGTATCTTGTCATT-GGGGTAGGCACTCTTTGGCAAAAATGAATAGACATTTAATTAGTCAACC-AAAAAAAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        33530 283 -   5160157 AATGACATCATCACTTTTTTATTCATAGGGTACAGTATCAT--TGCCAAAGAGTTTTCCTCTATATGTTCTCTTGCAGGGCAAAAAATATTATCTATTTTATACAGAAACACAGT-TAACAAAGTGATTTACTTAAGGTCCTAACTACTAAATAAAAGCTAAACTATTCACTTCCTCCTAGATTCAGAGAGAGCTCCAACATTTTCTAAAATTTAGTATCTTGTCGTT-GGGGTAGGCACTCTTTGGCAAAAATGAATAGACATTTAATTAGTCAACCAAAAAAAAA
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1       368464 279 -   1458659 AATGACATCATCACTTTTTTATTCATAGGGCACAGTATCAT--TGCCAAAGAGCTTTCCTCTATATGTTCTCTTGCAGGGCAAAAAA---TATCTATTTTATACAGAAACACAGT-AAAAAAAGTGATTTACTTAAGGTCCTAACTACTAAATAAAAGCTAAACTATTCACTTCCTCCTAGATTCAGAGAGAGCTCCAACATTTTCTAAAATTTAGTATCTTGTCATT-GGGGTAGGCACTTTTTGGCAAAAATGAATAGACATTTAATTAGTCAACC-AAAAAAAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3815972 283 -   4111199 AATGACATCATCACTTTTTTATTCATAGGGCACAGTATCGT--TGCCAAAGAGCTTTCCTCTGTATGTTCTCTTGTAGGGCAAAAAATATTATCTATTTTATACAGAAACACAGTAAAAAAAAGTGATTTACTTAAGGTCCTAACTACTAAATAAAAGCTAAACTATTCACTTCCTCCTAGATTCAGAGAGAGCTCCAACATTTTCTAAAATTTAGTATCTTGTCGTT-GGGGTAGGCACTTTTTGGCAAAAATGAATAGACATTTAATTAGTAAATC-AAAAAAAA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378276            2799487 268 +   3282555 AATGACACCATCACTTTAATATCTGTAGGACACAGTATCAT--TTCCAAAGAGCTTTCCTCTTCATGCTCTCTTGCAGGGCAAAAAATACTATCTATTGTACACAGAACCACAGT-AAAAGAAGCAATTTACTTAAGGTCCTAATTACTAAATAAAAGCTAAATTTCTCACTTCCTCCTAGATTCAGA----GCTCCAACATTTT-TAAAATTTAGTATCTTGCTTTTGGGGGTAGGCGCTTTTTGGC-------AACAGAAATTTAATTAGCCAATC-CAAAA---
i saiBol1.JH378276          I 1046 C 0
s cebCap1.NW_016107979v1       754497 268 +   1024465 AATGACACCATCACTTTAATATCTGTGGGACACAGTATCAT--TTCCAAGGAGCTTTCCTCTTTATCCTCTCTTGCAGGGCAAAAAATATTATCTATTGTATACAGAAACACAGT-AAAAGAAGCAATTTACTTAAGGTCCTAATTACTAAATAAAAGCTAAATTTCTCACTTCCTCCTAGATTCAGA----GCTCCAACATTTT-TAAAATTTAGTATCTTGCTGTTGGGGGTAGGCACTTTTTGGC-------AACAGAAATTTAATTAGCCAATC-AAAAA---
i cebCap1.NW_016107979v1    I 297 C 0
s otoGar3.GL873530           29601340 267 +  36342412 AATGACCCCACCACTATTCTATTTGTA---CACAGCAGAATGGTGCCAAAGAGTTTTC--CTATATGGTCTCTTGCAGGGCAAAAAGTATCACCTATTTTATACAGAAACATAAT----AGAAGTGGTTTGCTTCAAGTCCTAACTG-TAAGTAAAAGCTAAACCTCTCTCTTTCTCCTAGATTCAGA----GTTCCAACATCTTT--AAATTTAGTATCTTGCTGCTGGGAAAAGGAACTTTCTGGCAATGACGAACAGGAATTTAATTAGCTCACC-AAAAA---
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29               3873704 1402 +  24206276 I
e nomLeu3.chr6              102204023   0 + 121039945 C

a score=640.000000
s hg38.chr15_KI270850v1_alt    276127 2 +    430880 AA
s gorGor5.CYUI01015946v1       374654 2 +    378907 AA
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              107028270 2 - 169600520 AA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65376700 2 + 171882078 AC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        39291 2 +   6271500 AA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        33813 2 -   5160157 AA
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1       368743 2 -   1458659 AC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3816255 1 -   4111199 A-
i colAng1.NW_012116021v1    C 0 C 0
s cebCap1.NW_016107979v1       754765 2 +   1024465 AA
i cebCap1.NW_016107979v1    C 0 I 33
s otoGar3.GL873530           29601607 2 +  36342412 AA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29               3873704 1402 +  24206276 I
e nomLeu3.chr6              102204023 0 + 121039945 C
e saiBol1.JH378276            2799755 0 +   3282555 C

a score=1015499.000000
s hg38.chr15_KI270850v1_alt    276129 440 +    430880 CTtattaggtacagtaagttcctcttcaaaggtttaacctgttcaacttccttgttctttgttcctaagaacaatttccctgtaccttctcacccctatttacctgcttagttatctgctcagttacctgccttgtaaacaactcttcccatcagtcccaacctgtaactcacattccctctcccttccttattagggagaatattcgcgatagcaaatcaagtctgcttagattgtgtagtccgactccagcccatgtgggaatgacagagaggtagggactgcgttagggat-ataaactcctgctctat------cccgctcggtgtgctcttgcattcgtgactaatgcaaacagcagtcttttgcagaagtaagttgtcttgctgagaaaact-ttttttcctgagtgctggttcttccttgcagcactgatcatttgtttct
s gorGor5.CYUI01015946v1       374656 440 +    378907 CTtattaggtacagtaagttcctcttcaaaggtttaacctgttcaacttccttgttctttgttcctaagaacaatttccctgtaccttctcacccctatttacctgcttagttatctgctcagttacctgccttgtaaacaactcttcccatcagtcccaacctgtaactcacattccctctcccttccttattagggagaatattcgcgatagcaaatcaggtctgcttagattgtgtagtccgactccagcccatgtgggaatgacagagagttagggactgcgttagggat-ataaactcctgctctat------cccgctcggtgtgctcttgcattcgtgactaatgcaaacagcactcttttgcagaagtaagttgtcttgctgagaaaact-ttttttcctgagtgctggttcttccttgcagcactgatcatttgtttct
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              107028272 440 - 169600520 CTTATTAGGTACAGTAAgt---tcttcaaaagcttaacttgttcaaattccttgttctttgttcctaagaacaatttccctgtaccttctcgcccctacttacctgcttagttatctgctcagttacctgccttgtaaacaactcttcccatcagtctcaacctgtaactcacattccctctcccttccttatcagggaaaatactcgcgatagcaaatcaggtccgattagatcgtgaggtccgatcccagcccatgggggaatgacacagaagtagggactgtgttagggat-taaaacccctgctctagagagaacccactcgatgtgctcttgcaattgtgactaacccaagcagcactcttttgcag----aagttgtcttgctgagaaaaccgtttttgcctgagtgctggttcttccttgtggcactgatcatttgtttct
i rheMac8.chr7              C 0 I 6179
s macFas5.chr7               65376702 441 + 171882078 CTtattaggtacagtaagt---tcttcaaaagtttaacttgttcaacttccttgttctttgttcctaagaacaatttccctgtaccttctcggccctacttacctgattagttatctgctcagttacctgcctggtaaacaactcttcccatcagtatcaacctgtaactcacattccctctcccttccttattagggaaaatactcgcgatagcaaatcaggtccgattagatcgtgaggtccgaccccagcccatgggggaatgacacagaagtagggactgcgttagggataaaaaacccctgctctagagagaacccactcggtgtgctcttgcaattgtgaccaacccaagcagcactcttttgcag----aagttgtcttgctgagaaaaccgtttttgcctgagtgctggttcttccttgtggcactgatcatttgtttct
i macFas5.chr7              C 0 I 19321
s macNem1.NW_012011056v1        39293 440 +   6271500 CTTATTAGGTACAGTAAgt---tcttcaaaagcttaacttgttcaaattccttgttctttgttcctaagaacaatttccctgtaccttctcgcccctacttacctgcttagttatctgctcagttacctgccttgtaaacaactcttcccatcagtctcaacctgtaactcacattccctctcccttccttatcagggaaaatactcgcgatagcaaaccaggtccaattagatcgtgaggtccaaccccagcccatgggggaatgacacagaagtagggactgtgttagggat-taaaacccctgctctagagagaacccactcgatgtgctcttgcaattatgactaacccaagcagcactcttttgcag----aagttgtcttgctgagaaaaccgtttttgcctgagtgctggttcttccttgtggcactgatcatttgtttct
i macNem1.NW_012011056v1    C 0 I 5516
s cerAty1.NW_012001384v1        33815 429 -   5160157 CTtattaggtacagtaagt---tcttcaaaagtttaacttgttcaacttccttggtctttgttcctaagaacaatttccctgtaccttctcgcccctacttac------------ctgctcagttacctgccttgtaaacaactcttcccgtcagtctctacctgtaactcacattccctctcccttccttatcagggaaaatactcgcgatagcaaatcaggtccaattagatcgtgagatccgaacccagcccatgggggaatgacacagaagtagggactgcgttagggataaaaaacccctgctctagagagaacccactcggtgtgctcttgcaattgtgactaacccaagcagcactcttttgcag----aagttgtcttgctgagaaaaccgtttttgcctgagtgctggttcttccttgtggcactgatcatttgtttct
i cerAty1.NW_012001384v1    C 0 I 5597
s manLeu1.NW_012105520v1       368745 441 -   1458659 CTTACTaggtacagtaagt---tcttcaaaagtttaacttgttcaacttccttgttctttgttcctaagaacaatttccctgtatcttctcggccctacttacctgattagttatctgctcagttacctgccttgtaaacaactcttcccgtcagtctcaacctgtaactcacattccctctcccttccttatcagggaaaatactcgcgatagcaaatcaggtccgattagatcgtgaggtccgaccccagcccatgggggaatgacacagaagtagggactgcgttagggataaaaaacccctgctctagagagaacccactcggtgtgctcttgcaattgtgactaacccaagcagcactcttttgcag----aagttgtcttgctgagaaaaccgtttttgcctgagtgctggttcttccttgtggcactgatcatttgtttct
i manLeu1.NW_012105520v1    C 0 I 5699
s colAng1.NW_012116021v1      3816256 440 -   4111199 CTtattaggtacagtaagt---tcttcaaaagtttaacttgttcaacttccttgttctttgttcctaagaacaatttccctgtaccttctcgcccctacttacctgcttagttatctgctcagttacctgccttgtaaacaactcttcccgtcagtctcaacctgtaactcacattccctctcccttccttattagggaaaatactcgcgatagcaaatcaggtccaattagatcgtgtggtccgatcccagcccatgggggaatgacacagaagtagggactacattagggat-aaaaactcctgctctagagagaacccactcggtgtgctcttgcaattgtgactaacccaaggagcacttttttgcag----aagttgtcttgctaagaaaataatttttgcctgagtgctggttcttccttgcggcactgatcatttctttct
i colAng1.NW_012116021v1    C 0 I 4915
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       754767  33 +   1024465 I
e otoGar3.GL873530           29601609   0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29               3873704 1402 +  24206276 I
e nomLeu3.chr6              102204023   0 + 121039945 C
e saiBol1.JH378276            2799755   0 +   3282555 C

a score=80944.000000
s hg38.chr15_KI270850v1_alt    276569 885 +    430880 tttttctttctttttttttttttttttgagacagagtttcgctctgttgcccagggtggagcacagtggcttgatctcagctcactgcaagctccacctcccaggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcacccaccactgcgcccagctaatttttttgtatttttttttttttagtagagacggcatttcaccatgttagccaggatggtctcgatctcctgacttcatgatccgcccacctcggcctcccaaagtgctgggattacaggggcgagccactgcgcccagcctgatcatttgtttctaacaATCTGGGGGCTCGTCCGGAATTCCcattctcctctgagaaaagggtctccagtcaccaatagtgaggagaagcatcccactgcctcattgaggtggcctcatggtgagggatcaggacccacccagtgtgatgaataaacccggactctcagcagtctggaaaggaacagaccaacaacttaagagaaaaggatcctcacataccatggtgaccaggtaactatgtgcacagaccaacgtaagaaacatcacaagagcgacaaagtattttcttggtggttgggatatcttggagattgaaagtgtgtgttgagactcacaattgagtgcaaagcaagtgttcagtccagatctgcagttctgtggtcaccttatacagcttaaggtagcccttctgtaaaggagtctgggtcaggggtttctactgaaacagccattgctaagaggaaaccaacgttcccgtgagggaagcagccagagaaggatgaagcgaaaggagaaaagtgcaagaaacctccagcaggggggttgagcctc--ggaaaggaaagg
s gorGor5.CYUI01015946v1       375096 880 +    378907 tttttctttc-------ttttttttttgagacagagttttgctctgtcgcccagggtggagcacagtggcttgatctcagctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcacccaccactgcgcccagctaatttttttgtatttttttttttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgacttcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggggcgagccactgcgcccagccTGATCATTTGTTTCTAACAatatgggggctcgtccggaatccccattctcctctgagaaaagggtctccagtcaccaatagtgaggagaagcatcccactgcctcattgaggtggcctcatggtgagggatcaggacccacccagtgtgatgaataaacccggactctcagcagtctggaaaggaacagaccaacaacttaagagaaaaggatcctcacataccatggtgaccaggtaactatgtgcacagaccaacataagaaacatcacaagagcgacaaagtattttcttggtggttgggatatcttggagattgaaagtgtgtgttgagactcacaattgagtgcaaagcaagtgttcagtccagatctgcagttctgtggtcaccttatacagcttaaggcagcccttctgtaaaggagtctgggtcaggggtttctactgaaacagccattgctaagaggaaaccaacgttcccgtgagggaagtagccagagaaggacgaagcgaaaggagaaaagtgcaagaaacctccagcaggggggttgagcctctaggaaaggaaagg
i gorGor5.CYUI01015946v1    C 0 N 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       754767  33 +   1024465 I
e otoGar3.GL873530           29601609   0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3816696 4915 -   4111199 I
e manLeu1.NW_012105520v1       369186 5699 -   1458659 I
e chlSab2.chr29               3873704 1402 +  24206276 I
e cerAty1.NW_012001384v1        34244 5597 -   5160157 I
e macNem1.NW_012011056v1        39733 5516 +   6271500 I
e macFas5.chr7               65377143 19321 + 171882078 I
e rheMac8.chr7              107028712 6179 - 169600520 I
e nomLeu3.chr6              102204023   0 + 121039945 C
e saiBol1.JH378276            2799755   0 +   3282555 C

a score=0.000000
s hg38.chr15_KI270850v1_alt    277454 344 +    430880 gaaaggaaagggaaagggaaagggaaaggaaaggaaagggaaaggaaaggaaaggaaagggaaaggaaaggaaagggaaaggaaaggaaagggaaagggaagggaaagggaagggaaagagaagggaaagggaagggaagggaagggaagggaagggaagggaagggaagggaagggaaggaaaggaaaggtgagaaatctccagtaggagaggttgagccttatacaaacctctcgtaactgggaagaaatttctagtaggggaaattgagcctcaccccaatcccttttcaagatgggaaatacctcaagtaatgcaggggagaaaaaggataaagctagca
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       754767  33 +   1024465 I
e otoGar3.GL873530           29601609   0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3816696 4915 -   4111199 I
e manLeu1.NW_012105520v1       369186 5699 -   1458659 I
e chlSab2.chr29               3873704 1402 +  24206276 I
e cerAty1.NW_012001384v1        34244 5597 -   5160157 I
e macNem1.NW_012011056v1        39733 5516 +   6271500 I
e macFas5.chr7               65377143 19321 + 171882078 I
e rheMac8.chr7              107028712 6179 - 169600520 I
e nomLeu3.chr6              102204023   0 + 121039945 C
e saiBol1.JH378276            2799755   0 +   3282555 C

a score=664781.000000
s hg38.chr15_KI270850v1_alt    277798 7335 +    430880 [encoded data, 7345 characters]
s gorGor5.CYUI01015946v1       110222 7315 -    378907 [encoded data, 7345 characters]
i gorGor5.CYUI01015946v1    N 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464    0 -   1040364 I
e canFam3.chr30               1743556    0 -  40214260 I
e cebCap1.NW_016107979v1       754767   33 +   1024465 I
e otoGar3.GL873530           29601609    0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3816696 4915 -   4111199 I
e manLeu1.NW_012105520v1       369186 5699 -   1458659 I
e chlSab2.chr29               3873704 1402 +  24206276 I
e cerAty1.NW_012001384v1        34244 5597 -   5160157 I
e macNem1.NW_012011056v1        39733 5516 +   6271500 I
e macFas5.chr7               65377143 19321 + 171882078 I
e rheMac8.chr7              107028712 6179 - 169600520 I
e nomLeu3.chr6              102204023    0 + 121039945 C
e saiBol1.JH378276            2799755    0 +   3282555 C

a score=418.000000
s hg38.chr15_KI270850v1_alt    285133 3 +    430880 aAC
s gorGor5.CYUI01015946v1       117537 3 -    378907 aAC
i gorGor5.CYUI01015946v1    C 0 C 0
s saiBol1.JH378276            2799755 3 +   3282555 AAA
i saiBol1.JH378276          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       754767 33 +   1024465 I
e otoGar3.GL873530           29601609 0 +  36342412 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3816696 4915 -   4111199 I
e manLeu1.NW_012105520v1       369186 5699 -   1458659 I
e chlSab2.chr29               3873704 1402 +  24206276 I
e cerAty1.NW_012001384v1        34244 5597 -   5160157 I
e macNem1.NW_012011056v1        39733 5516 +   6271500 I
e macFas5.chr7               65377143 19321 + 171882078 I
e rheMac8.chr7              107028712 6179 - 169600520 I
e nomLeu3.chr6              102204023 0 + 121039945 C

a score=9406.000000
s hg38.chr15_KI270850v1_alt    285136 26 +    430880 AATCTCGCTAaaagcagcctagaaag
s gorGor5.CYUI01015946v1       117540 26 -    378907 AATCTCGCTAAAAGcagcctagaaag
i gorGor5.CYUI01015946v1    C 0 C 0
s saiBol1.JH378276            2799758 26 +   3282555 AGTCTCACTCATAACAGCCTAGCAAG
i saiBol1.JH378276          C 0 I 4
s otoGar3.GL873530           29601609 26 +  36342412 AGTTCCACCAAAAGTAGCCTAGCAAA
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       754767 33 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3816696 4915 -   4111199 I
e manLeu1.NW_012105520v1       369186 5699 -   1458659 I
e chlSab2.chr29               3873704 1402 +  24206276 I
e cerAty1.NW_012001384v1        34244 5597 -   5160157 I
e macNem1.NW_012011056v1        39733 5516 +   6271500 I
e macFas5.chr7               65377143 19321 + 171882078 I
e rheMac8.chr7              107028712 6179 - 169600520 I
e nomLeu3.chr6              102204023  0 + 121039945 C

a score=300507.000000
s hg38.chr15_KI270850v1_alt    285162 518 +    430880 cagccacttatgcag-aaagagtaataatttatgctctacaagtcatataaaaa-------atgaagtttcatttgtttaccggctaatttacttcctgggagaCATTTTTCATTCTAAAAcagtgattccctaccaagagttcatagatgccaagaagtccataaaaggcgtaatggaattgccaaattatgttaaatacttcaaaaggactc----aaagccatatactagttcccaataggcctgcacaagttattagaacaagctgctttgcattCTTGTGTGATCA-GAACCAGTA---------ACTAGATGGCAATCAGGTCTG-TTACTGAAGATGGAAAAACTATACTTAAGTTTGTATAACAATCTTTCATAACATGGCTTCACAGAAAAGAAGT-ATAAAAAGGATTCCTT--GGTTGAAAAAGAGTGCTCTTTTCCCTTCATTATTTAAGATTAGGACAAAT---TTATAAAACAGGAAAAAAA-------TAGCACAAATCCCTTGGCAAACAGAGTAAAACATCTACTCT--GTTTTGCTTT
s gorGor5.CYUI01015946v1       117566 518 -    378907 cagccacttatgcag-aaagagtaataatttatgctctacaagtcatataaaaa-------atgaagtttcatttgtttaccggctaatttacttcctgggAGACATTTTTCATTCTAAAACAGTGATTCCCTACCAAGAGTTCATAGATGCCAAGAAGTCCACAAAAGGAGTAATGGAATTGCCAAATTATGTTAAATACTTCAAAAGGACTC----AAAGCCATATACTAGTTCCCAATAGGCCTGCATAAGTTATTAGAACAAGCTGCTTTGCATTTTGGGGTGATCA-GAACCAGTA---------ACTGGATGGCAATCAGGTCTG-TTACTGAAGATGGAAAAACTACACTTAAGTTTGTATAACAATCTTTCATAACATGGCTTCACAGAAAAGAAGT-ATAAAAAGGATTCCTT--GGTTGAAAAAGAGTGCTCTTTTCCCTTCATTATTTAAGATTAGGACAAAT---TTATAAAACAGGAAAAAAA-------CAGCACAAATCCCTTGGCAAACAGAGTAAAACATCTACTCT--GTTTTGCTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s saiBol1.JH378276            2799788 524 +   3282555 CAGCCACTCATGCAGAAAAGAGAAATAATTTATGCTCTACAAGTCATACAGAAAA------ATGAAGTTTCATTTGTTTA-CAGCTAATTCACTTCCTGGGGGAGAGTTTTCATTCTAAAAcagtgattccctaccaagagttcccagatgccaagaattccataaaaggaataatagagttgcc--attatgtcaaatacttcaaaaggtctaaaagaaagtcatatactagctcccaataaggctgcacaagttactgaaacaagctgcttttcgtttcggtgtgattg-taaccactA---------ATTAGATGGCAATCAGGTTAGTTTACTGAAGATGGAAAAGCTGTACTTAAGTTTGTGTAACAATCTCTCGTAACTTGGCTTC-----ACAGAAGTAATAAAAATGATTCCTTGAGGATGGAACAGAGTGCTC-TTTCCCTTCATT-TTTAAGAGTAGGACAAAT---TTATAAAACAGAAAAATAATTACAATTAGCTCAATTCCCTTGGCCTATAGAGTAAAACATCTACTGT--TTTTTTTTT-
i saiBol1.JH378276          I 4 C 0
s cebCap1.NW_016107979v1       754800 532 +   1024465 CAGCCACTCACGCAG-AAAGAGCAATAATTTATGCTCTACAAGTCATATAGAAAAATGAAGATGAAGTTTCATTCGTTTA-CAGCTAATTCCCTTCCTGGGGGAGATTTTTCATTCTAAAAcagtgattccctaccaagagttcccagatgccaagaattccataaaaggaataacggagttgcc--attatgttaaatacttcaaagggactaaaagaaagctatatactagctcccaataaggctgcacaggttactgaaacaagctgctttgcgtttcggtgTGATCGTTAACAACTA---------ATTAGATGGCAATCAGGTTAGTTTACTGAAGATGGAAAAACTATACTTAAGTTTGTGTAACAATCTCTCAGAACTTGGCTTCACAGAACAGAAGTAATAAAAATGATTCCTTGAGGTTGAAAAAGAGTGCTCTTTTCCCTTCATT-TTTAAGAGTAGGACAAAT---TTATAAAACAGAAAAAGAATTACAATTAGCTCAATTCCCTTGGCTTATAGCGTAAAGCAGCTACTG------TTTTTT-
i cebCap1.NW_016107979v1    I 33 C 0
s otoGar3.GL873530           29601635 522 +  36342412 CAGGCACTCACGCAG-AAA-AGGAATGATTTATGCTATACAAATAACATAAAAA-------ATGATGTTTCGTCTGTTTACCAGGTAATTTACTTT-------AGATTTTTTGCTCTAACATTGCAAttctctaccaagagtccccatatgccaagaagtccataaaaggagtaatggagttgccaagttaggtaaaatacttcaaaaggactaaaagaaagctatatactagcttccaataaggctgcacaggtcattaaaacaaggtgttttgcttttaggtgtgatca-caacaactggatgtTAGCGCTCACTGGCAATTTCACTGT-TTACTAAAAATAATAAAACCGTACTTAAG-TTGTATAGC---TTGAAGTATTATAACTTCACAGAAGACA----ATAAAAAGAACTCCTTCAGATTTTAAAAAAGCATTCTTTTCCCTTCATA-TTTAAGATCAGGGCAAATGTGTGATTAAACAGAGCGGAAA------TTAGCTCAATTCCCTTGGCTTAGAGAGTAAGACATCTACGTTTGGATGGGTTT-
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3816696 4915 -   4111199 I
e manLeu1.NW_012105520v1       369186 5699 -   1458659 I
e chlSab2.chr29               3873704 1402 +  24206276 I
e cerAty1.NW_012001384v1        34244 5597 -   5160157 I
e macNem1.NW_012011056v1        39733 5516 +   6271500 I
e macFas5.chr7               65377143 19321 + 171882078 I
e rheMac8.chr7              107028712 6179 - 169600520 I
e nomLeu3.chr6              102204023   0 + 121039945 C

a score=1000267.000000
s hg38.chr15_KI270850v1_alt    285680 464 +    430880 --TTTTCACTTCTTACACTCTCTTTCATAGGAAGTCAATTTACAGACTTCCATCAAGCCCTTAGAGACC-TTTTTGTACTATCCATGACAAGCTCTTGATGTTATCTCTGCACTTTTGACAAATTCTTAGCAGTTAACTTACAAGGCAGTTAAGATTTTTGTTC-AAGCACAATATAGCTAGAATAGGCTCATACATTCAATAAAACAAATATTTACCAAGCATTTATTGAGTGGAAGAT--------------------------------------------AAAAAGCACAAAGC-----------ATAATTATA--AAATATT----------------------------------------------------------------TTCCCCT-------------------GCCA------------------------------------------------------------CCAT---------------------------AAAAAAA-----TTAAACAGGCTT-----------------ACAGAATACAGTGTAAGAAAACATGACCAAAGCAAAAATAGTAAGGACTAAAGAAGGGAGGAAGGGGAAATATCAACATGGACTGAATATGACCCAAAAGAGCCTTGATGGATGGTCAGAC--ATGTAAAGGCAAATTGGTT------AGGGTTAAGG--GGTGGAGGTCA-GGG
s gorGor5.CYUI01015946v1       118084 464 -    378907 --TTTTCACTTCTTACACTCTCTTTCACAGGAAGTCAATTTACAGACTTCCATCAAGCCCTTAGAGACC-TTTTTGTACTATCCATGACAAGCTCTTGATGTTATCTCTGCACTTTTGACAAATTCTTAGCAGTTAACTTACAAGGCAGTTAAGATTTTTGTTC-AAGCACAATATAGCTAGAATAGGCTCACACATTCAATAAAACAAATATTTACCAAGCATTTATTGAGTGGAAGAT--------------------------------------------AAAAAGCACAAAGC-----------ATAATTATA--AAATATT----------------------------------------------------------------TTCCCCT-------------------GCCA------------------------------------------------------------CCAT---------------------------AAAAAAA-----TTAAACAGGCTT-----------------ACAGAATACAGCGTAAGAAAACATGACCAAAGCAAAAATAGTAAGGACTAAAGAAGGGAGGAAGGGGAAATATCAACATGGACTGAATATGACCCAGAAGAGCCTTGATGGATGGTCAGAC--ATGTGAAGGCAAATCGGTT------AGGGTTAAGG--GGTGGAGGTCA-GGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102204023 458 + 121039945 --TTTTCACTTCTTACACTCTCTTTCATAGGGAGTCAATTTACAGACTTCCATCAAGCCCTTAGAGACC-TTTTTGTACTATCCATGACAAGTTCTTGAAGTTATGTCTGCACTTTTGACAAATTCTTAGCAGTTAACTTACAAAGCAGTTAAGATTTTTGTTC-AAGCACAATATAGCTAGAATAGGGTCATACATTCAATAAAACAAACATTTACCAAGCATTTATTGAGTGGAAGAT--------------------------------------------AAAAAGCACAAAGC-----------ATACTTATA--AAACATT----------------------------------------------------------------CTCCCCT-------------------GCCA------------------------------------------------------------CCAT---------------------------AAAAAAGTTTTTTTAAGC---CTT-----------------ACAGAATACAGCAT-----AACATGACCAAAGCAAAAATAGTGAGGACTAAAGAGGGGAGGAAGGGGAAACATCAGCACAAACTAAATATGACCCAGAAGAGCCTT----GATGGTCAGGC--GCGTAAAGACAAATTGGGT------AGGGTTAGGG--GGTGGCTGTCAGGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62692754 459 + 169600520 --TTTTCACTTCTTACACTCTCTTTCATATGAAGTCAATTTACAGACTTCTATCAAGCCCTTAGAGACC-TTTTTGTACTATCCATGACGAGTTCTTGATGTTATCTCTGCACTTTTGACACATTCTTAGCAGTTAACTTACAAGGCAGTTAAGATTTTTGTTC-AAGCACAATGTAGTGACAATAGAATCACACACTTAATAAAACAAATATTTACCAAGCATTTATTCAGTGGAAGAT--------------------------------------------GAAAAGCACAAAGT-----------ATAATTATA--AAATATT----------------------------------------------------------------CTCCCCT-------------------GCCA------------------------------------------------------------CCATTT------------------------TAAAAAAA-----GTAAAAAGGCTT-----------------ACAGAATACAGCAT-----AACATGACCAAAGCAAAAATAGTAAGGACTAAAGAGGGTAGGAAGGTGATATATCAGCATGAACAAAATATGACCCAGAAGAGCCTT----GGTGGTCAGAC--ATGTAAAGACAAATTGGGT------AGGGTTAGTG--GGTGGCTGTCAGGGG
i rheMac8.chr7              I 7410 C 0
s macFas5.chr7              106641418 459 - 171882078 --TTTTCACTTCTTACACTCTCTTTCATATGAAGTCAATTTACAGACTTCTATCAAGCCCTTAGAGACC-TTTTTGTACTATCCATGACGAGTTCTTGATGTTATCTCTGCACTTTTGACACATTCTTAGCAGTTAACTTACAAGGCAGTTAAGATTTTTGTTC-AAGCACAATGTAGTGACAATAGAATCACACACTTAATAAAACAAATATTTACCAAGCATTTATTCAGTGGAAGAT--------------------------------------------GAAAAGCACAAAGT-----------ATAATTATA--AAATATT----------------------------------------------------------------CTCCCCT-------------------GCCA------------------------------------------------------------CCATTT------------------------TAAAAAAA-----GTAAAAAGGCTT-----------------ACAGAATACAGCAT-----AACATGACCAAAGCAAAAATAGTAAGGACTAAAGAGGGTAGGAAGGTGATATATCAGCATGAACAAAATATGACCCAGAAGAGCCTT----GGTGGTCAGAC--ATGTAAAGACAAATTGGGT------AGGGTTAGTG--GGTGGCTGTCAGGGG
i macFas5.chr7              I 2310 C 0
s chlSab2.chr29              20390302 459 -  24206276 --TTTTCACTTCTTACACTCTCTTTCATATGAAGTCAATTTACAGACTTCCATCAAGCCCTTAGAGACC-TTTTTGTACTATCCATGACGAGTTCTTGATGTTATCTCTGCACTTTTGACACATTCTTAGCAGTTAACTTACAAGGCAGTTAAGATTTTTGTTC-AAGCACAATATAGTGACAATAGGATCACACACTTAATAAAACAAATATTTACCAAGCATTTATTCAGTGGAAGAT--------------------------------------------GAAAAGCACAAAGT-----------ATAATTATA--AAATATT----------------------------------------------------------------CTCCCCT-------------------GCCA------------------------------------------------------------CCATTT------------------------AAAAAAAA-----GTAAAAAGGCTT-----------------ACAGAATACAGCAT-----AACATGACCAAAGCAAAAATAGTAAGGACTAAAGAGGGGAGGAAGGTGACATATCAGCATGAACAAAATATGACCCAGAAGAGCCTT----GGTGGTCAGAC--ATGTAAAGACAAATTGGGT------AGGGTTAGGG--GGCGGCTGTCAGGGG
i chlSab2.chr29             n 1402 C 0
s saiBol1.JH378276            2800312 445 +   3282555 --TTTTCAATTCTTATA--CTCTTTCATATTAAGTCAATTTACAGACT--CATCAAGCCCTTATTGACC-TTTTTGTACTACCCATGACAAGTTCTTGATCTTATCTCTAAACTTTTGACAAATTCTTAGCAGTTAACTTACAAGGCAGTTAAGATTTTTGTTC-AAATACAATATAGCTAGAATAGGGTCACAT---------AATAAATATTTACGAAGCATTTATTGAGTGGAAGAT--------------------------------------------AAAAAGAACAAAGC-----------ATAATTAT-------ATT----------------------------------------------------------------CTCCCCT-------------------GCCA------------------------------------------------------------TCAT---------------------------AAAAAA------AAATTAAGGCTT-----------------ACAGAATACTGCATAAGAAAACATAACCAACCCAAAAAGAGTAATGTCTCAAGAGGGGAAGAAGGGGAAATATCAGCATGAACTGAGTAGGACCCAGAAGAGCCTTGAGGGATGATCAGGC--ATATAAAGACAAATTGGGT------AGGGTTAAGG--GGTGGGGCTCAGGG-
i saiBol1.JH378276          C 0 I 1
s cebCap1.NW_016107979v1       755332 452 +   1024465 --TTTTCACTTCCTATA--CTCTTTCATATTAAGTCAATTTACAGACT--CATCAAGCCCTTATTGACCTTTTTTGTACTACCCATGACAAGTTCTTGATCTTATCTCTAAACTTTTGACAAATTCTTAGCAGTTAACTTACAAGGTAGCTAAGATTTTTGTTC-AAATACAATATACCTAGAATAGGGTCATATACTC-----AGTAAATATTTCCGAAGCATTTATTGAGTGGAAGAT--------------------------------------------AAAAGGCACGAAGC-----------ATAATTAT-------ATT----------------------------------------------------------------CTCCCCT-------------------GCCA------------------------------------------------------------CCAT---------------------------AAAAAAA---TTATTTTAAGGCTT-----------------ACAGAATACTGCATAAGAAAACATAACCAAACCAAAAATAGTAATATCTAAAGAGAG---GAAGGGGAATTATCAGCATGAACTGAATATGACCCAGAAGAGCCTTGAGGGATGATCAGGCATATATAAAGACAAATTGGGT------AGGGTTAAGG--GGTGGGGGTCAGGG-
i cebCap1.NW_016107979v1    C 0 I 615
s otoGar3.GL873530           29602157 707 +  36342412 TTTTCCCATTTCTTACACTGTCTTTCATATGAAGTCAATGTACAGATTTCCTATAAGCCTTCAATGACC-TTTTCATACTGTCCACGA-ATATTCTTGGTATTATCTCTGCAATTTTTACAACCTCTTGGCAGCAAACCCACAAGGTAGTTAAGATTTCTGTTCAAAGTAGAATATAGCTAGAATGAGGCCATATAGTCAGTAAaacaaatatttactgagcatttactgagtagaaggTGAATGAAAATTTTCTCCCTTGCTGCCATAAAAAAAACCTTTTAAAAAAGACATAAGGCTAAAAAACATAATAAATATaacaaaaattaaaaaataaaaataataaaagcaaataaaaataaaaaAGATACAAggctagatgtagtagctgacacctctaattctaagactttgagacgccaaggcaggaggatcacttgagatcaggagtgagagtagcctgggggtaacacagtgagactccatctctacaaaaaaaaaaatttaattaaaaaaaaaa-----aaaAAAAGGCTTAAACACCCCAAACTGTAATAGAATACAGTAT-AAAAAACATAACCAAGATAGAAATAGTAAGGACTAAAG---GGAGCAAGGGGAAATATCAGCATGGACTACGTATGACCCAGAAAGGCCTTGAGGGATAGTCAGAT--TTG-AAAGATAGGCTGGGTCTGGTAAGGGTTAGAGAAGTTGGAGG-------
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3816696 4915 -   4111199 I
e manLeu1.NW_012105520v1       369186 5699 -   1458659 I
e cerAty1.NW_012001384v1        34244 5597 -   5160157 I
e macNem1.NW_012011056v1        39733 5516 +   6271500 I

a score=141442.000000
s hg38.chr15_KI270850v1_alt    286144 73 +    430880 CACGTTCTATAGGGAAACG---GCAGCTGATACAGAAGCCTGAAAGGAAAAGCGGGCAGAGCACCTGGACAGGACT
s gorGor5.CYUI01015946v1       118548 73 -    378907 CACATTCTATAGGGAAACG---GCAGCTGATACAGAAGCCTGAAAGGAAAAGCGGGCAGAGCACGTGGACAGGACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102204481 73 + 121039945 CACATTCTACAGGGGAAAA---ACAGCTGATATAGAAGCCTGAAAGGAAAAGCGGGCAGAGCACCTGGACAGGACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               62693213 73 + 169600520 CACATTCTACAGGGGAAAA---ATAGCTGATACAGAAGCCTGAAAGGAAAAGCGGGCAGAGCGCCTGTACAGGACT
i rheMac8.chr7              C 0 n 0
s macFas5.chr7              106641877 73 - 171882078 CACATTCTACAGGGGAAAA---ATAGCTGATACAGAAGCCTGAAAGGAAAAGCGGGCAGAGCGCCTGTACAGGACT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              20390761 73 -  24206276 CACATTCTACAGGGGAAAA---ACAGCTGATACAGAAGCCTGAAAGGAAAAGCGGGCAGATCACCTGTACAGGACT
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378276            2800758 76 +   3282555 CACATTCTACAAGGGGAAGCCTGTAGCTGACACAAAAGTCTGAAAGGAAAAGCCTGCAGAGTACCTCTATATGACT
i saiBol1.JH378276          I 1 C 0
s otoGar3.GL873530           29602864 73 +  36342412 CACATTCCTCATGGGAACA---ACAGCTGATACAGAAGCCTGAAAGAAAAAGGGGACACAGTGTCTTTAGGGCATT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       755784 615 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3816696 4915 -   4111199 I
e manLeu1.NW_012105520v1       369186 5699 -   1458659 I
e cerAty1.NW_012001384v1        34244 5597 -   5160157 I
e macNem1.NW_012011056v1        39733 5516 +   6271500 I

a score=3596.000000
s hg38.chr15_KI270850v1_alt    286217 3 +    430880 CTT
s gorGor5.CYUI01015946v1       118621 3 -    378907 CTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6              102204554 3 + 121039945 CTT
i nomLeu3.chr6              C 0 N 0
s macFas5.chr7              106641950 3 - 171882078 GTT
i macFas5.chr7              C 0 n 0
s chlSab2.chr29              20390834 3 -  24206276 CTT
i chlSab2.chr29             C 0 n 0
s saiBol1.JH378276            2800834 3 +   3282555 CTT
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530           29602937 3 +  36342412 ATT
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       755784 615 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3816696 4915 -   4111199 I
e manLeu1.NW_012105520v1       369186 5699 -   1458659 I
e cerAty1.NW_012001384v1        34244 5597 -   5160157 I
e macNem1.NW_012011056v1        39733 5516 +   6271500 I
e rheMac8.chr7               62693286 0 + 169600520 I

a score=112431.000000
s hg38.chr15_KI270850v1_alt    286220 189 +    430880 CAGGAACGAGCACGCACGTGCGTGAAAAACAACTTAGTGAGGTAC-CGTTCACCCAAACATTAGAGAAACCGCG-TAAAAATGCTTCTTGG---TAAGCATGAAGAAGGCAGGGCTCGCCCTGTAGAAGAACTCAATAAACATTTGAACTGTCTAAAGAGTAAAAGTTAATGAATAGGCCAAACTCACTCCTTT
s gorGor5.CYUI01015946v1       118624 189 -    378907 CAGGAACCAGCACGCACGTGCGTGAAAAACAACTTAGTGAGGTAC-CGTTCACCCAAACATTAGAGAAACCGCA-TAAAAATGCTTCTTGG---TAAGCATGAAGAAGGCAGGGCTCGGCCTGTAGAAGAACTCAATAAACATTTGAACTGTCTAAAGAGGAAAAGTTAATGAATAGGCCAAACTCACTCCTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19246909 189 - 121039945 CAGGAACTAGCACGCACATGTGTGAAAAACAACTTAGTGAGGTAC-CATTCACCCAAACATTAGAGAAACCGCA-TAAAAATGCTTCTTGG---TAAGCATGAAGAAGGCAGGGCCTGGCTTGTAGAAGAACTCAATAAACATTTGAACTGTCTGAAGAGGAAAAGTTAATGAATAGACCAAACTCACTCCTTT
i nomLeu3.chr6              N 0 C 0
s saiBol1.JH378276            2800837 181 +   3282555 CAGGAACTAGCATCCATGTGTGTAAAAGACAACCGAG------------TTTCCCAAACATTAGAGAAATTCCATTAAGGATGCTTCTTGGTAATAAGCATAAAGAAGacagggcctggcatgtagaggaactcaataaatatttAAACTGTCTAAAGAGGAAAA-TTAAAGAATAGGTCAAACTCACTGCttt
i saiBol1.JH378276          C 0 C 0
s otoGar3.GL873530           29602940 184 +  36342412 CAGAAACTAACTAACACGCATGTTACAAAGGAC------AAGTACTTATTCACTCAAACATGACAGAAACTACA-TAAGGATGCTTCTAGG---TGGACATGAAGAACACACGGCCCACCATGTAGAGGAGCTAAATAAATACCTGAGTAGTCTAAAAAGGAAAAGTTAAAGAATAGGTCAAACTTATTACCTT
i otoGar3.GL873530          C 0 I 142
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e cebCap1.NW_016107979v1       755784 615 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3816696 4915 -   4111199 I
e manLeu1.NW_012105520v1       369186 5699 -   1458659 I
e chlSab2.chr29              20390837   0 -  24206276 I
e cerAty1.NW_012001384v1        34244 5597 -   5160157 I
e macNem1.NW_012011056v1        39733 5516 +   6271500 I
e macFas5.chr7              106641953   0 - 171882078 I
e rheMac8.chr7               62693286   0 + 169600520 I

a score=2559.000000
s hg38.chr15_KI270850v1_alt    286409 9 +    430880 CTTTGTTTT
s gorGor5.CYUI01015946v1       118813 9 -    378907 CTTTGTTTT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19247098 4 - 121039945 C-----TTT
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378276            2801018 9 +   3282555 ttttttttt
i saiBol1.JH378276          C 0 N 0
s otoGar3.GL873530           29603266 9 +  36342412 cCTTTTTTT
i otoGar3.GL873530          I 142 I 5
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e cebCap1.NW_016107979v1       755784 615 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3816696 4915 -   4111199 I
e manLeu1.NW_012105520v1       369186 5699 -   1458659 I
e chlSab2.chr29              20390837 0 -  24206276 I
e cerAty1.NW_012001384v1        34244 5597 -   5160157 I
e macNem1.NW_012011056v1        39733 5516 +   6271500 I
e macFas5.chr7              106641953 0 - 171882078 I
e rheMac8.chr7               62693286 0 + 169600520 I

a score=27223.000000
s hg38.chr15_KI270850v1_alt    286418 55 +    430880 AAGAGCTACAAC--TTTAGAGAATAACAAATCACAAACCCAGTAGACAGGTCCTGGC
s gorGor5.CYUI01015946v1       118822 55 -    378907 AAGAGCTACAAC--TTTAGAGAATAACAAATCACAAACCCAGTAGACAGGTCCTGGC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19247102 55 - 121039945 AAGAGTTACAAC--TTTAGAGAATAACAAATCACAAACCCAGTAGACAGGTCCTGGC
i nomLeu3.chr6              C 0 C 0
s otoGar3.GL873530           29603280 57 +  36342412 AAGAGTTATAACTTTTTAGAGAATAACAAATCACAAACCCAGTAAACAGCTCCTGCC
i otoGar3.GL873530          I 5 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e cebCap1.NW_016107979v1       755784 615 +   1024465 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3816696 4915 -   4111199 I
e manLeu1.NW_012105520v1       369186 5699 -   1458659 I
e chlSab2.chr29              20390837  0 -  24206276 I
e cerAty1.NW_012001384v1        34244 5597 -   5160157 I
e macNem1.NW_012011056v1        39733 5516 +   6271500 I
e macFas5.chr7              106641953  0 - 171882078 I
e rheMac8.chr7               62693286  0 + 169600520 I

a score=80445.000000
s hg38.chr15_KI270850v1_alt    286473 117 +    430880 ATTTCAAATCCAACCCCATTTTTCCCTTAATCTTTCCCCTCTGAGCAAATGGTATCGACATGAACAAGCCATGTTGATTTGATCAAGACACTCAACCATGGttaaaagagtctttac
s gorGor5.CYUI01015946v1       118877 117 -    378907 ATTTGAAATCCAACCCCATTTTTCCCTTAATCTTTCCCCTCTGAGCAAATGGTATCGACATGAACAAGCCATGTTGATTTGATCAAGACACTCATCCATGGttaaaagagtctttac
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19247157 117 - 121039945 ATTTGAAATCCAACCCTTTTTTTCCCTTGATCTTTCCCCTCTGAGCAAATGGTATCGACATGAACAAGCCATGTTGATTTGATCAAAACACTCATCCATGGttaaaatagtctttac
i nomLeu3.chr6              C 0 C 0
s cebCap1.NW_016107979v1       756399 117 +   1024465 ATTTGAAATCCAACCCCATTTTCCCTTTGATCTTTCCCTTCTAAACAAATGGTACGGCCATGCACAAGCCATGTTGATTTTATCAAAACACTCATCCACGTTTAGAAGAGTCTTTAC
i cebCap1.NW_016107979v1    I 615 N 0
s otoGar3.GL873530           29603337 114 +  36342412 ATCTGAAATGCAACTGTACTTTGCCTT---GCTCTTCTTTCTAAGTACATGGTATCAACATGAACAAGCCATGTGGATTTTATCAAAACACTCATCCATAtttaaaagaatcattat
i otoGar3.GL873530          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3816696 4915 -   4111199 I
e manLeu1.NW_012105520v1       369186 5699 -   1458659 I
e chlSab2.chr29              20390837   0 -  24206276 I
e cerAty1.NW_012001384v1        34244 5597 -   5160157 I
e macNem1.NW_012011056v1        39733 5516 +   6271500 I
e macFas5.chr7              106641953   0 - 171882078 I
e rheMac8.chr7               62693286   0 + 169600520 I

a score=49724.000000
s hg38.chr15_KI270850v1_alt    286590 130 +    430880 cttcaagagatacaaacagaaatattgacagatgaagtgatctgtctggaatctgcttcaaaataatccaaagt-------------ggagtataaatgaaataagattagccaaaagtttatc---attgttgagggtggCTACA
s gorGor5.CYUI01015946v1       118994 130 -    378907 cttcaagagatacaaacagaaatatttacagatgaagtgatctgtctggaatctgcttcaaaataatccaaagt-------------ggagtataaatgaaataagattagccaaaagtttatc---attgttgagggtggCTACA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19247274 130 - 121039945 cttcaagagatacaaacagaaatatttacagatgaagtgatctgtctgcaatctgcgtcaaaagaatccaaagt-------------ggagtataaatgaaataagattagccaaaagtttatc---attgttgaggctggCTACA
i nomLeu3.chr6              C 0 C 0
s otoGar3.GL873530           29603451 142 +  36342412 cttctaga-acacatcctgaaa-atttacagataaagtagtatgtctggaatttactt--aaatcatctacaatttgctataaaaaaagagtatagatgaaacaagattagccagaactttattaaaactgttgaggttgggtaca
i otoGar3.GL873530          C 0 n 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3816696 4915 -   4111199 I
e manLeu1.NW_012105520v1       369186 5699 -   1458659 I
e chlSab2.chr29              20390837   0 -  24206276 I
e cerAty1.NW_012001384v1        34244 5597 -   5160157 I
e macNem1.NW_012011056v1        39733 5516 +   6271500 I
e macFas5.chr7              106641953   0 - 171882078 I
e rheMac8.chr7               62693286   0 + 169600520 I

a score=6658.000000
s hg38.chr15_KI270850v1_alt    286720 25 +    430880 GTACATAGTTCAACTTTTGTTGAgg
s gorGor5.CYUI01015946v1       119124 25 -    378907 GTACATAGTTCAACTTTTGTTGAgg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19247404 25 - 121039945 GTACCTAGTTCAACTTTTGTTGAgg
i nomLeu3.chr6              C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873530           29603593  0 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3816696 4915 -   4111199 I
e manLeu1.NW_012105520v1       369186 5699 -   1458659 I
e chlSab2.chr29              20390837  0 -  24206276 I
e cerAty1.NW_012001384v1        34244 5597 -   5160157 I
e macNem1.NW_012011056v1        39733 5516 +   6271500 I
e macFas5.chr7              106641953  0 - 171882078 I
e rheMac8.chr7               62693286  0 + 169600520 I

a score=123310.000000
s hg38.chr15_KI270850v1_alt    286745 172 +    430880 ccaggcatggtggctcacacctgtaatcccaacactttgtgaagtggaggcagaaggatcacttagcccaggagttcgagaccagcccgggaaacacagggagacaccgtctctcc-------aaaaaaaaaaaaaaaaaaaaaaaaaattagccac-catgatggtgagtgctacttgt
s gorGor5.CYUI01015946v1       119149 164 -    378907 ccaggcatggtggctcacacctgtaatcccaacactttgtgaagtggaggcagaaggatcacttagcccaggagttcgagaccagcctgggaaacacagggagacaccgtctctcc---------------aaaaaaaaaaaaaaaaaattagccac-catgatggtgagtgctacttgt
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19247429 169 - 121039945 cc-ggcatggtggctcacacctgtaatcccaacactttgtgaagtggaggcagaaggatcacttagcccaggagttcgagaccagcctgggaaacatagggagacatcatctctcc---------aaaaaaaaaaaaaaaaaaaaaaaattagccac-catgaaggtgagtgctacttgt
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378108           49573595 180 +  54856640 ccaggcatggtggctcgtgcctgtaactgcaacagtttgcgaaatggaggcggaaggatcacttagcctgggagttcaagaccagcctgggcaacacaggaagatatcatctctaccaaaaaaaaaaaaaaagaaagaaaggaaaaagaaaatccactcatgatggtgagtggtacttgg
i saiBol1.JH378108          N 0 C 0
s aotNan1.NW_018505940v1     39813421 171 +  42888418 ccaggcatggtggctcgcgcctgtaattccaacactttgagaagtggaggcagaaggatcacttagcccgggagttcgagaccagcctgggcgacacagggagacatcatctctac---------aaaaaaagaaagaaagaaaaaagaaaatccactcatgatggtgagtggtacttgg
i aotNan1.NW_018505940v1    N 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873530           29603593   0 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3816696 4915 -   4111199 I
e manLeu1.NW_012105520v1       369186 5699 -   1458659 I
e chlSab2.chr29              20390837   0 -  24206276 I
e cerAty1.NW_012001384v1        34244 5597 -   5160157 I
e macNem1.NW_012011056v1        39733 5516 +   6271500 I
e macFas5.chr7              106641953   0 - 171882078 I
e rheMac8.chr7               62693286   0 + 169600520 I

a score=608534.000000
s hg38.chr15_KI270850v1_alt    286917 120 +    430880 gaggctgaggtagaaggatcacttgagcctgggaggtcaaggctgcactaagctgtgattgtgccactgc-acttcagcctggacaaaagagtgagactctgtctc---------aaaacaaaaaacaaa
s gorGor5.CYUI01015946v1       119313 117 -    378907 gaggctgaggtagaaggatcacttgagcctgggaggtcaaagctgcactaagctgtgattgtgccactgc-acttcagcctggacaaaagagtgagactctgtctc---------aaaacaaaa---aca
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19247598 114 - 121039945 gaggctgaggtagaaggatcacttgagcctgggaggtcaaggctgcactaagctgtgattgtgccactgc-acttcagcctggacaaaagagtgagactctgcctc---------aaaacaaca------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107034891 117 - 169600520 gaggctgaaggagaaggatcacttgagcctgggaggtcaaggctacactaagctgtgactgtgccactgc-acttcagtctggacaaaagagtgacactctgtctc---------aaaacaaaa---aca
i rheMac8.chr7              I 6179 C 0
s macFas5.chr7               65396464 117 + 171882078 gaggctgaagtagaaggatcacttgagcctgggaggtcaaggctacactaagctgtgactgtgccactgc-acttcagtctggacaaaagagtggcactctgtctc---------aaaacaaaa---aca
i macFas5.chr7              I 19321 C 0
s macNem1.NW_012011056v1        45249 117 +   6271500 gaggctgaaggagaaggatcacttgagcctgggaggtcaaggctacaccaagctgtgactgtgccactgc-acttcagtctggacaaaagagtgacactctgtctc---------aaaacaaaa---aca
i macNem1.NW_012011056v1    I 5516 C 0
s cerAty1.NW_012001384v1        39841 117 -   5160157 gaggctgaagtagaaggatcacttgagcctgggaggtcaaggctacactaagctgtgactgtgccactgc-acttcagtctggacaaaagagtgacactctgtctc---------aaaacaaaa---aca
i cerAty1.NW_012001384v1    I 5597 C 0
s chlSab2.chr29               3875106 117 +  24206276 gaggctgaagtagaaggatcacttgagcctgggaggtcaaggctacactaagttgtgattgtgccactgc-acttcagtctggacaaaagagtgacactctgtctc---------aaaacaaaa---aca
i chlSab2.chr29             I 1402 C 0
s manLeu1.NW_012105520v1       374885 117 -   1458659 gaggctgaagtagaaggatcacttgagcctgggaggtcaaggctacactaagctgtgactgtgccactgc-acttcagtctggacaaaagagtgacactctgtctc---------aaaacaaaa---aca
i manLeu1.NW_012105520v1    I 5699 C 0
s colAng1.NW_012116021v1      3821611 117 -   4111199 gaggctgaagtagaaggatcacttgagcctgggaggtcaaggctacactaagctgtgattgtgccactgc-acttcagtctggacaaaagagtgagactctgtctc---------aaaacaaaa---aca
i colAng1.NW_012116021v1    I 4915 C 0
s saiBol1.JH378108           49573775 127 +  54856640 gagggtgaggtagaaagatcatttaagcctgggaggtcaaggctgcagtgagctttgattgtgccactctaactttagcctggacaaaagagtaagacTTTTTTTTTTTTTTTTAAAGACAGAG---AGA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39813592 117 +  42888418 gagggtgaggaagaaggatcacttgagcctgggaggtcaaggctgcagtgagctatgattgcaccactgtaactttagcctggacaaaagagtaagactctgtctt----------aaaaaaaa---aaa
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873530           29603593   0 +  36342412 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=856745.000000
s hg38.chr15_KI270850v1_alt    287037 165 +    430880 aaaaaaaaaaaaaaGAAAGATGGAACATATTATAACTGTCAGACCATTTGTTGCAACCTGGGCTGCAATCTTTTTCTTTAAACCCAAAAGAACTTCTGACCAGGTAAATGTAGTCTTTTTTTCTTTTTT-AATGACAAATCTACTTTATAAAGTACCTTCCCTTAT-
s gorGor5.CYUI01015946v1       119430 164 -    378907 acaacaacaaaaaaGACAGATGTAACATATTATAACTGTCAGA-CATTTGTTGCAACCTGGGCTGCAATCTTTTTCTTTAAACCCAAAAGAACTTCTGACCAGGTAAATGTAGTCTTTTTTTCTTTTTT-AATGACAAATCTACTTTATAAAGTACCTTCCCTTAT-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19247712 157 - 121039945 --------aaaaaagaaaGATGTAACATATTATAACTGTCAGACCATTTGTTGCAACCTGGGCTGCAATTTTTTTCCTTAAACCCAAAAGAACTTCTGACCAGGTAAATGTAGTCTTTTTTTCTTTTTT-AACGAAAAATCTACTTTATAAAGTACCTTCCCTTAT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107035008 164 - 169600520 aacaaacaaac-aaaaaaGATGTAACACATTATAACTGTCAGACCATTTGTTGCAACCTGGGCTACAATTTTTTTCTTTAAACCCAAAAGAACTTCTGACCAGGTAAATATAGTCTTTTTTTCTCTTTT-AATGAAGAATCTACTTTATAAAGTACCTTCCCTTAT-
i rheMac8.chr7              C 0 I 6041
s macFas5.chr7               65396581 159 + 171882078 aacaaacaaac-aaaaaaGATGTAACACATTATAACTGTCAGACCATTTGTTGCAACCTGGGCTGCAATTTTTTTCTTTAAACCCAAAAGAACTTCTGACCAGGTAAATATAGTCTTTTT-----TTTT-AATGAAGAATCTACTTTATAAAGTACCTTCCCTTAC-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        45366 159 +   6271500 aacaaacaaac-aaaaaaGATGTAACACATTATAACTGTCAGACCATTTGTTGCAACCTGGGCTACAATTTTTTTCTTTAAACCCAAAAGAACTTCTGACCAGGTAAATATAGTCTTTTT-----TTTT-AATGAAGAATCTACTTTATTAAGTACCTTCCCTTAC-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        39958 165 -   5160157 aacaaacaaacgaaaaaaGATGTAACATATTATAACTGTCAGACCATTTGTTGCAACCTGGGCTACAATTTTTTTCTTTAAACCCAAAAGAACTTCTGACCAGGTAAATATAGTCTTTTTTTCTTTTTT-AATGAAGAATCTACTTTATAAAGTACCTTCCCTTAT-
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3875223 160 +  24206276 aacaaac-----aaaaaaGATGTAACACATTATAACTGTCAGACCATTTGTAGCAACCTAGGCTACAATTTTTTTCTTTAAACCCAAAAGAACTTCTGACCAGGTAAATATAGTCTTTTTTTCTTTTTT-AATGAAGAATCTACTTTATAAAGTACCTTCCCTTAT-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       375002 165 -   1458659 aacaaacaaacaaaaaaaGATGTAACATATTATAACTGTCAGACCATTTGTTGCAACCTGGGCTACAATTTTTTTCTTTAAACCCAAAAGAACTTCTGACCAGGTAAATATAGTCTTTTTTTCTCTTTT-AATGAAGAATCTACTTTATAAAGTACCTTCCCTTAT-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3821728 160 -   4111199 aacaaac-----aaacaaGATGTAACACATTATAACTATCAGACCATTTGTTGCAACCTGGGCTACAATTTTTTTCTTTAAACCCAAAACAACTTCTGACTAGGTAAATATAGTCTTTTTTTCTTTTTT-AATGAAGAATCTACTTTATAAAGTACCTTCCCTTAT-
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49573902 150 +  54856640 GAGAAAGAGAAAAATAAAAACATAAAATACTATAACTGTCAGACCATTTGCTGCAACCTGGGCTGCAAATTCTTCCTTTAAACCCAAAAG-------AATCAGGTAAATGTATTCTT--------TTTT-AATGACAAATCTACTTTATAAAGTACCTTCCCTTAT-
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39813709 156 +  42888418 aagaaagagaaaaataaaGACGTAACATATTATAACTGTCAGACCATTTGTTGCAAACTGGGCTGCAAATTTTTCCTTTAAACCCGAAAGAACTTCTAATCAGATAAATGTCTTCTT--------TTTT-AATGACAAATCTACTTTA-AAAGTACCTTCCCTTAT-
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9371065 165 -  19069880 AAATCACAAGAAAGGAAAGACACATCAGGCTGTAACTACAGGACCGTTTGTTGAGATCTGGGCTGCAATTTTTTA--TTAAACCCAAAAGTACTTCTGATAACAGAAATGTCCTTTTTTCTTTTCTTTTAAATGACAAACCTACTTTATATAGTACTTTTCCCTTTT
i otoGar3.GL873548          n 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=1161572.000000
s hg38.chr15_KI270850v1_alt    287202 187 +    430880 CAGTGAGAAA------GAAAATATAAAAGAGCTGAGTCAAATCTGGAGTCAATAAAGGTTTGTAGTTCT----TCAAACAAGAACCCTTGCTCTGAATTCTAAAAGTAAATAACAGACATGCTGAAAAAATATTTCATTTTATGAAAGGTTCTGCACCAAAGCCTTTTACAAAAACAGTCTACAAAACCTACTAAAC
s gorGor5.CYUI01015946v1       119594 193 -    378907 CAGTGAGAAAGAAAAGGAAAATATAAAAGAGCTGAGTCAAATCTGGAGTCAATAAAGGTTTGTAGTTCT----TCAAACAAGAACCCTTGCTCTGAATTCTAAAAGTAAATAACAGACATGCTGAAAAAATATTTCATTTTATGAAAGGTTCTGCACCAAAGCCTTCTACAAAAACAGTATACAAAACCTACTAAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19247869 193 - 121039945 CACTGAGAAAGAAAAGGAAAATATAAAAGAGTTGAGTCAAATCTGGAGTCAATAAAGGTTTGTAGTTCT----TCAAACAAGAACCCTTGCTGTGAATTCTAAAAGTAAGTAACAGATATGCTGAAAAAAGATTTCATTTTATGAAAGATTCTGCACCAAAGCCTTTTACAAAAATAGTATACAAAACCCATTAAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107041213 193 - 169600520 CAGTGAGAAAGAAAATGAAAATACAAAAGAGCTGAGTCAAATCTGGAGTCAATAAAGGTTTGCAGCTCT----TCAGACAAGAACCCTTTCCACGAATTCTAAAAGTAAATAACAGGCATGTTGAAAAAAGATTTCATTTTATGAAAGATTCTGCATCAAAACCTTTTACAAAAATAGTATACAAAACCCACTAAAC
i rheMac8.chr7              I 6041 C 0
s macFas5.chr7               65396740 193 + 171882078 CAGTGAGAAAGAAAAGGAAAATACAAAAGAGCTGAGTCAAATCTGGAGTCAATAAAGGTTTGCAGCTCT----TCAGACAAGAACCCTTTCCACGAATTCTAAAAGTAAATAACAGGCATGTTGAAAAAAGATTTCATTTTATGAAAGATTCTGCATCAAAACCTTTTACAAAAATAGTATACAAAACCCACTAAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        45525 193 +   6271500 CAGTGAGAAAGAAAAGGAAAATACAAAAGAGCTGAGTCAAGTCTGGAGTCAATAAAGGTTTGTAGCTCT----TCAGACAAGAACCCTTTCCACGAATTCTAAAAGTAAATAACAGGCATGTTGAAAAAAGATTTCATTTTATGAAAGATTCTGCATCAAAACCTTTTACAAAAATAGTATACAAAACCCACTAAAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        40123 193 -   5160157 CAGTGAGAAAGAAAAGGAAAATACAAAAGAGCTGAGTCAAATCTGGAGTCAATAAAGGTTTGTAGCTCT----TCAGACAAGAACCCTTTCCACGAATTCTAAAAGTAAATAACAGGCATGTTGAAAAAAGATTTCATTTTATGAAAGATTCTGCATCAAAACCTTTTACAAAAATAGTATACAAAACCCACTAAAC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3875383 193 +  24206276 CAGTGAGAAAGAAAAGGAAAACACAAAAGAGCTGAGTCTAATTTGGAGTCAATAAAGGTTTGTAGCTCT----TCAGACAAGAACCCTTTCCACGAATTCTAAAAGTAAATAACAGGCATGTTGAAAAAAGATTTCATTTTATGAAAGATTCTGCATCAAAACCTTTTACAAAAATAGTATACAAAACCCACTAAAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       375167 193 -   1458659 CAGTGAGAAAGAAAAGGAAAATACAAAAGAGCTGAGTCAAATTTGGAGTCAATAAAGGTTTGTAGCTCT----TCAGACAAGAACCCTTTCCATGAATTCTAAAAGTAAATAACAGGCATGTTAAAAAAAGATTTCATTTTATGAAAGATTCTGCATCAAAACCTTTTACAAAAATAGTATACAAAACCCACTGAAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3821888 193 -   4111199 CAGTGAGAAAGAAAAGGAAAATATAAAAGAGCTGAGTCAAATTTGGAGTCAGTAAAGGTTTCTAGTTCT----TCAGACAAGAATCCTTTCCATGAATTCTAAAAGTAAATAACAGGCATGTTGAAAAAAGATTTCATTTTATGAAAGATTCTGCATCAAAACCTTTTACAAAAATAGTATACAAAACCCACTAAAC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49574052 192 +  54856640 CAGTGAGAAAGAAAAGGAAAATATAAAAGAGCTGAGTCAAATTTGGAGTCAATAAACGCTTGTAGTTCT----TTAAACAAGAACCCTCTA-GTGAATTCTAAAAATAAATAACAGATGTGCTGAAAAAAGATTTCATTCTATGAAAGATTCTGCACCAAAGCCTTTTACAAAAATAGTATACAAAAATCACTAAAC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39813865 192 +  42888418 CAGTGAGAAAGAAAAGGAAAATATAAAAGAGCTGAGTCAAATTTGGAGTCAATAAAGGTTTGTAGTTCT----TCAAACAAGAACCCTCTC-GTGAATTCTAAAAATAAATAACAGATGTGCTGAAAAAATTTTTCATTTTATGAAAGATTCTGCACCAAAGTATTTTACAAAAATAGTACACAAAAATCACTAAAC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9371230 192 -  19069880 ----GAGTGACAGAAGAAAAACACAAAAGAGCTGAGTCAAATTTTAGGTCTCTGAAGGTTTGTCGTTTTCCTGTCAAACTAGAACACTTGCTGTGTGCTCTAAAAATAAATCACAGACATCCTG-AAAAAGATTTCATTTTATGAAAGATTCTACACCAAAGCCTTTCACAAAAATAGTGTGCAAAAACGACTCAAT
i otoGar3.GL873548          C 0 I 1234
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=1328784.000000
s hg38.chr15_KI270850v1_alt    287389 226 +    430880 ATCCTGTTCCATCTTCCACTTTGAAATCAC---TTGCTTGGTCTAAATT--CAGTTTCATTAATAAAAATGAACACAATAAAACAGTACTCTATGCCCCCATTCCACCCCAACAATTATCTTCAAAGGATGTCCAGATTTCTGTACGCTATTTGCCAATCCTACCTACATATTAAAAAAACAAATCTCAGCTT------TAGAGGAAAATCACTGGTTAATTAAAATGTCATTTAGG
s gorGor5.CYUI01015946v1       119787 225 -    378907 ATCCTGTTCCATCTTCCACTTTGAAATCAC----TGCTTGGTCTAAATT--CAGTTTCATTAATAAAAATGAACACAATAAAACAGTACTCTATGCCCCCATTCCACCCCAACAATTATCTTCAAAGGATGTCCAGATTTCTGTACGCTATTTGCCAATCCTACCTACATATTAAAAAAACAAATCTCAGCTT------TAGAGGAAAATCACTGGTTAATTAAAATGTCATGTAGG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19248062 227 - 121039945 ACCCTGTTCCATCTTCCATTCTGAAATCAC----TGCTTGGTCTAAATTCACAGTTTCTTTAATAAAAATGAACAGAATAAAACAGTACTCTATGCCCCCATCCCACCCCAACAATTACTTTCAAAGGATGTCCAGATTTTTGTACACTATTTGCCAATCCTACCTACGTCTTAAAAAAACAAATCTCAGCTT------TAGAGGAAAATCACTGGTTAATTAAAATGTCATTTAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107041406 225 - 169600520 ATCCTGTTCCATCTTCCACTCTGAAATCAC----TACTTGGTCTAAATTCACAGTTTCATTAATAAAAATGAACACAGTAAAACAGTACTCTATGCCTCCATCCCACCCAAACAATTATCTTCAAATGATGTCCAGATTTCTGTACACTATTTGCGAATCCTACCTAGGTCTTAAAAAAAC--ATCTCAGCTT------TAGAGGAAAATCACTGGTTAATTAAAATGTCATTTAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65396933 225 + 171882078 ATCCTGTTCCATCTTCCACTCTGAAATCAC----TACTTGGTCTAAATTCACAGTTTCATTAATAAAAATGAACACAGTAAAACAGTACTCTATGCCTCCATCCCACCCAAACAATTATCTTCAAATGATGTCCAGATTTCTGTACACTATTTGTGAATCCTACCTAGGTCTTAAAAAAAC--ATCTCAGCTT------TAGAGGAAAATCACTGGTTAATTAAAATGTCATTTAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        45718 225 +   6271500 ATCCTGTTCCATCTTCCACTTTGAAATCAC----TACTTGGTCTAAATTCACAGTTTCATTAATAAAAATGAACACAGTAAAACAGTACTCTATGCCTCCATCCCACCCAAACAATTATCTTCAAATGATGTCCAGATTTCTGTACACTATTTGCGAATCCTACCTAGGTCTTAAAAAAAC--ATCTCAGCTT------TAGAGGAAAATCACTGGTTAATTAAAATGTCATTTAGG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        40316 225 -   5160157 ATCCTGTTCCATCTTCCACTCTGAAATCAC----TACTTGGTCTAAATTCACAGTTTCATTAATAAAAATGAACACAGTAAAACAGTACTCTATGCCTCCATCCCACCCAAACAATTATCTTCAAATGATGTCCAGATTTCTGTACACTATTTGCCAATCCTACCTAGGTCTTAAAAAAAC--ATCTCAGCTT------TAGAGGAAAATCACTGGTTAATTAAAATGTCATTTAGG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3875576 225 +  24206276 ATCCTGTTCCATCTTCCACTCTGAAATCAT----TACTTGGTCTAAATTCACAGTTTCATTAATAAAAATGAACACAATAAAACAGTACTCTATGCCTCCATCCCACCCAAACAATTATCTTCAAATGATGTCCAGATTTCGGTACACTATTTGCCAATCCTACCTAGGTCTTAAAAAAAC--ATCTCAGCTT------TAGAGGAAAATCACTGGTTAATTAAAATGTCATTTAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       375360 225 -   1458659 ATCCTGTTTCATCTTCCACTCTGAAATCAC----TACTTGGTCTAAATTCACAGTTTCATTAATAAAAATGAACACAATAAAACAGTACTCTATGCCTCCATCCCACCCAAACAATTATCTTCAAATGATGTCCAGATTTCTGTACACTATTTGCCAATCCTACGTAGGTCTTAAAAAAAC--ATCTCAGCTT------TAGAGGAAAATCACTGGTTAATTAAAATGTCATTTAGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3822081 225 -   4111199 ATCTTGTTCCATCTTCCACTCTGAAATCAC----TACTTGGTCTAAATTCACAGTTTCATTAATAAAAATGAACACAGTAAAACTGTACTCTATGTCTCTATCCCACCCAAACAATTATCTTCAAATGATGTCCAGATTTCTGTACACTATTTGCCAATCCTACCTAGGTCTTAAAAAAAC--ATCTCAGCTT------TAGAGGAAAATCACTGGTTAATTAAAATGTCATTTAGG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49574244 235 +  54856640 ATCCTGTTCCATCTTTCATTCTGAAATCACTACTTGCTTGGTCTAAATT--CAGTTTCATTAATAAAAATGAACACAATAAAACAGTACTCTATGCCCGCATCCCACCCCAACAATTATATTGAAAGGATGTCCACATTTCTGTATGCTATTTGACAATCCTACCTAGATTTTAAAAAAACAAATCTCAGCTTTACCTCTAGAGGAAAATCACTGGTTAATGAAAATGTTATTTAGG
i saiBol1.JH378108          C 0 I 325
s aotNan1.NW_018505940v1     39814057 227 +  42888418 ATCCTGTTCCATCTTTC--------ATCACTACTTGCTTGGTCTAAATT--CAGTTTCATTAATAAAAATGAACACAATAAAACAGTACTCTATGCCCGCATCCCACCCCAACAATTATATTAAAAGGATGTCCAGATTTCTGTATGCTATTTGCCAATCCTACCTAGGTCTTAAAAAAACAAATCTCAGCTTTACCTCTAGAGGAAAATCACTGGTTAATGAAAACGTCATTTAGG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9372656 219 -  19069880 ATCCTGTTCCAT-TTTCATTCAGCAATTAATGTTTACTTGGTCTAAATTCACATTTCCATTAATTAAAGTGAACACCATAAAACAGTACTCTATA-----GTCTCACCCCAAGAATT-----------GTGCTCAAATTTCTTTACACTATTTGCCAATCTTACATAGGTCTCAAAAAAAT-AATTGCAGCTTCATCTCTAGAGGAAAATCATCAGTTAATTAAAATGAGATTTAGA
i otoGar3.GL873548          I 1234 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=26652.000000
s hg38.chr15_KI270850v1_alt    287615 4 +    430880 GTTG
s gorGor5.CYUI01015946v1       120012 4 -    378907 GTTG
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19248289 4 - 121039945 GTTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107041631 4 - 169600520 GTTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65397158 4 + 171882078 GTTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        45943 4 +   6271500 GTTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        40541 4 -   5160157 GTTG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3875801 4 +  24206276 GTTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       375585 4 -   1458659 GTTG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3822306 4 -   4111199 GTTG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49574804 4 +  54856640 GTTG
i saiBol1.JH378108          I 325 C 0
s aotNan1.NW_018505940v1     39814284 4 +  42888418 GTTG
i aotNan1.NW_018505940v1    C 0 I 324
s otoGar3.GL873548            9372875 4 -  19069880 ATTA
i otoGar3.GL873548          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=2379072.000000
s hg38.chr15_KI270850v1_alt    287619 434 +    430880 TATTTGTTTTCTATGAAGGGATAATAATGGGATATTTTATTTTCATTTATTACTAAAGCAACACCTTTCATTATTAGAAATGTATTTCCATTTCAAGCTACGTTTCAAAGCAA--ATTATATTCTTCAACTAGCCACTTTCATAGGTATTTTGAATGCAATATTTTATTATAAAGCCTTGGCTGGCCTCCAGTGTTAATTAGCACAAAAAGATGGGTTTATTTTCAAAAGACA-----------------------------------------------------------------------------------GGACATTCTTTTCAGCCTTCAAAATGTTTTCATCAAAAATTA--CTATGTACCATAAAAATAACACGCTCACTGTAAA-CATTTAAGCGATTCAA----AGA--T----AAAGTAGAAAGTCAAAGTCTCCACC--TACCTGCCCTCTAAGATGTTAATACTTATGCTTAACATATTTTA-TTTTTTAAAAGGAGGGGAAATCACAT-CATA---ACTACTTT-
s gorGor5.CYUI01015946v1       120016 434 -    378907 TATTTGTTTTCTATGAAGGGATAATAATGGGATATTTTATTTTCATTTATTACTAAAGCAACACCTTTCATTATTAGAAATGTATTTCCATTTCAAGCTACGTTTCAAAGCAA--ATTATATTCTTCATCGAGTCACTTTCATAGGTATTTTGAATGCAATATTTTATTATAAAGCCTTGGCTGGCCTCCAGTGTTAATTAGCACAAAAAGATGGGTTTATTTTCAAAAGACA-----------------------------------------------------------------------------------GGACATTCTTTTCAGCCTTCAAAATGTTTTCATCAAAAATTA--CTATGTACCATAAAAATAACATGCTCACTGTAAA-CATTTAAGCGATTCAA----AGA--T----AAAGTAGAAAGTCAAAGTCTCCACC--TACCTGCCCTCTAAGATGTTAATACTTATGCTTAACATATTTTA-TTTTTTAAAAGGAGGGGAAATCACAT-CATA---ACTACTTT-
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19248293 428 - 121039945 TATTTGCTTTCTATGAAGGGATAATAATGGGATATTTTATTTTCATTTATTACTAAAGCAACACCTTTCATTATTAGAAATATATTTCCATTTCAAGCTACGTTTCAAAGCAA--ATTATATTCTTCAACTAGCTACTTTCATAGTTGTTTGGAATGCAATATTTTATTATAAAGCCTTGGCTGGCCTCCAGTGTTAATTAGCAC--AAAGATGGGTTTATTTTCAAAAGACA-----------------------------------------------------------------------------------GGACATTCTTTTCGGCCTTCAGAATGTTTTCATCAAAAATTA--CTATGTATTATACAAATCACATGCTCACTGTAAA-CATTTAAGAGATTCAAAGATAGA--T----AAAGTAGAAAGTCAAAGTCTCCATC--TACCTGCCCTCTAAGATGTTAATACTTAGGCTTAACATATTTTA-TTTTTTAAAAGGAGGGGAAATCACAT-CA-----------TT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107041635 432 - 169600520 TATTTGTTTTCTATGAAGGGACAATAATGGGATATTTTATTTTCATTTATTACTAAAACAACATCTTTCATTATTAGAAATATACTTCCATTTCAAGATATATTTCAAAGCAA--ATTATATTCTTCAACTAGCCACTTTCATAGGTGTTTTGAATGCAATATTTTATTATAAAGCCTTGGCTGACCTCCAGTGTTAATTAGCAC--AAAGATAGGTTTATTCTCAAAAGACA-----------------------------------------------------------------------------------CGACATTCTTTTCAGCCTTCAAAGTGTTTTCATCAAAAATTA--CTATGTATCATACAAATAATATGCTCACTGTAAA-CATTTAAACCATTCAA----AGA--T----AAAGTAGAAAGTCAAAGTCTCCACC--TATCTGCCCTCTAAGATGTTACTACTTATGCTTAACATATTTTA-TTTTTAAAAAGGAGGGGAAACCACAT-CATA---ACTACTTT-
i rheMac8.chr7              C 0 I 315
s macFas5.chr7               65397162 432 + 171882078 TATTTGTTTTCTATGAAGGGATAATAACGGGATATTTTATTTTCATTTATTACTAAAACAACATCTTTCATTATTAGAAATATACTTCCATTTCAAGATATATTTCAAAGCAA--ATTATATTCTTCAACTAGCCACTTTCATAGGTGTTTTGAATGCAATATTTTATTATAAAGCCTTGGCTGGCCTCCAGAGTTAATTAGCAC--CAAAATGGGTTTATTTTCAAAAGACA-----------------------------------------------------------------------------------GGACATTCTTTTCAGCCTTCAAAATGTTTTCATCAAAAATTACTCTATGTATCATACAAATAATATGCTCACTGTAAA-CATTTAAACGATTCAA----AGA--T----AAAGTAGAAAGTC--AGTCTCCACC--TACCTGCCCTCTAAGATGTCACTACTTATGCTTAACATATTTTA-TTTTTAAAAAGGAGGGGAAACCACAT-CATA---ACTACTTT-
i macFas5.chr7              C 0 I 266
s macNem1.NW_012011056v1        45947 434 +   6271500 TATTTGTTTTCTATGAAGGGATAATAATGGGATATTTTATTTTCATTTATTACTAAAACAACATCTTTCATTATTAGAAATATACTTCCATTTCAAGATATATTTCAAAGCAA--ATTATATTCTTCAACTAGCCACTTTCATAGGTGTTTTGAATGCAATATTTTATTATAAAGCCTTGGCTGACCTCCAGTGTTAATTAGCAC--AAAGATAGGTTTATTCTCAAAAGACA-----------------------------------------------------------------------------------CGACATTCTTTTCAGCCTTCAAAGTGTTTTCATCAAAAATTA--CTATGTATCATACAAATAATATGCTCACTGTAAA-CATTTAAACGATTCAA----AAA--T----AAAGCAGAAAGTCAAAGTCTCCACC--TATCTGCCCTCTAAGATGTTACTACTTATGCTTAACATATTTTA-TTTTTAAAAAGGAGGGGAAACCACATCCATA--TACTACTTT-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        40545 432 -   5160157 TATTTGTTTTCTATGAAGGGATAATAATGGGATATTTTATTTTCATTTATTACTAAAACAACATCTTTCATTATTAGAAATATACTCCCATTTCAAGATATGTTTCAAAGCAA--ATTATATTCTTCAACTAGCCACTTTCATAGGTGTTTTGAATGCAATATTTTATTATAAAGCCTTGGCTGACCTCCAGTGTTAATTAGCAC--AAAGATAGGTTTATTCTCAAAAGACA-----------------------------------------------------------------------------------CGACATTCTTTTCAGCCTTCAAAATGTTTTCATCAAAAATTA--CTATGTATCATACAAATAATATGCTCACTGTAAA-CATTTAAACGATTCAA----AGA--T----AAAGTAGAAAGTCAAAGTCTCCACC--TATCTGCCCTCTAAGATGTTACTACTTATGCTTAACATATTTTA-TTTTTAAAAAGGAGGGGAAACCACAT-CATA---ACTACTTT-
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3875805 425 +  24206276 TATTTGTTTTCTATGAAGGGATAATAATGGGATATTTTATTTTCATTTATTACTAAAACAACACCTTTCATTGTTAGAAATATACTTCCATTTCAAGACAGATTTCAAAGCAA--ATTATATCCTTCAACTAGCCACTTTCATAGGTGTTTTGAATGCAATATATTATTATAAAGCCTTGGCTGACCTCCAGTGTTAATTAGCAC--CAAGATAGGTTTATTCTCAAAAGACA-----------------------------------------------------------------------------------CGACATTCTTTTCGGCCTTCAAAATGTTTTCATCAAAAATTA--CTATGTATTATACAAATAATATGCTCACTGTAAA-CATTTAAACGATTCAA----AGA--T----AAAGTAGAAAGTC--AGTCTCCACC--TACCTGCCCTCTAAGATGTTACTACTTATGCTTAACATA------TTTTTTAAAAGGAGGGGAAATCACAT-CATA---ACTACTTT-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       375589 514 -   1458659 TATTTGTTTTCTATGAAGGGATAATAATGGGATATTTTATTTTCATTTATTACTAAAACAACACCTTTCATTGTTAGAAATATACTCCCATTTCAAGATATGTTTCAAAGCAA--ATTATATTCTTCAACTAGCCACTTTCATAGGTGTTTTGAATGCAATATTTTATTATAAAGCCTTGGCTGACCTCCAGTGTTAATTAGCAC--AAAGATAGGTTTATTCTCAAAAGACAGGACATTCTTTTCAGCCTTCAAAATGTTTTCATCAAAAATTACTATGTATCATACAAATAATATGTCTAGATGTGTATAAGAGAGACATTCTTTTCAGCCTTCAAAATGTTTTCATCAAAAATTA--CTATGTATCATACAAATAATATGCTCACTGTAAA-CATTTAAACGATTCAA----AGA--T----AAAGTAGAAAGTC--AGTCTCCACC--TATCTGCCCTCTAAGATGTTACTACTTATGCTTAACATATTTTATTTTTTAAAAAGGAGGGGAAACCGCAT-CATA---ACTACTTT-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3822310 431 -   4111199 TATTTGTTTTCTATGAAGGGATAATAATGGAATATTTTATTTTCATTTATTACTAAATCAACACCTTTCATTATTAGAAATATACTTCCATTTCAAGATATGTTTCAAAGCAA--ATTATATTCTTCAACTAGCCACTTTCATAGGTGTTTTGAATGCAATATTTTATTATAAAGCCTTGGCTGACCTCCAGTGTTAATTAGCAC--AAAGATAGGTTTATTCTCAAAAGACA-----------------------------------------------------------------------------------CCACATTCTTTTCAGCCTTCAAAATGTTTT-ATCAAAAATTA--CTATGCATCATACAAATAATATGCTCACTGTAAA-CATTTAAAGGATTCAA----AGA--T----AAAGTAGAAAGTCAAAGTCTCCACC--TATCTGCCCTCTAAGATGTTACTACTTATGCTTAACATATTTTA-TTTTTTAAAAGGAGGGGAAATCACAT-CATA---ATTACTTT-
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49574808 441 +  54856640 TATTTGTTTACTATGAAGGGGCAATAATGGAAAATTTTATTTTCATTTATTACTAAGGCAGTGCC-TTCATTATTAGAAGTATAACTCCATTTCAAGCTATGTTTCAAAGAAATTATTATATTCTTGAACTGGCCGCTTTCATAGGTGTTTTGAAAGTAACATTTTATTATAAAGCCTTGGTTGGCCTCCAGTATTAATCAGCAC--AAAGATGGATTTATTTTCAAAAGAGA-----------------------------------------------------------------------------------GGACATTCTTTTCAGCCTTCAAAATATTTTCATCGAAAATGA--CTACGCATCATACTAATAACATACTCAGTGTAAA-CATTTAAACAATTCAA----AGACTTAGAAAAAGTAGAAAGTCAAAGTCCACCTCTTTACTTGCCCTCTAACATGTTACCACTTATGCTTAATCTATTTTA-TTTTTTAAAAGGAGGGGAAATCATAT-CCTA---ACAACTTT-
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39814612 436 +  42888418 TATTTGTTTACTATGAAGGGGCAATAATGGAAAATTTTATTTTCATTTATTACTAAGGCAATACC-TTCATTATTATAAGTATAATTCCATTTCAAGCTATGTTTCAAAGAA---ATTATATTCTTGAACTGGCCACTTTCATAGGTGTTTTGAAAGTAACATTTTATTATAAAGCCTTGGTTGGCCTCCAGTATTAATCAGCAC--AAAGATGGATTTATTTTCAAAAGAGA-----------------------------------------------------------------------------------GGACATTCTTTTCAGCCTCCAAAATGTTTTCATCGAAAATTA--CTATGCATCATACAAATAACATGCTCAGTGTAAA-CACTTAAACGATCCAA----AGA--TAGAAAAAGTAGAAAGTCAAAGTCCACTTCTTTACTTGCCCTCTAACATGTTACCACTTATGCTTAATCTATTTTA-TTTTTAAAACGGAGGGGAAATCATAT-CATA---ACGACTTT-
i aotNan1.NW_018505940v1    I 324 C 0
s otoGar3.GL873548            9372879 395 -  19069880 GACCTGTCTTCTGTGAAGAGACAAAAGCAACACTGTT-----------------------ACACTGTTCATTATTTGAGATAT--TCCCCTTTCGAGCAATGCCTCAAAGTTA--ATTATATTCTTGAACTCGTTAC-TTCATAGGTGTGCTGAAGGTGATACTTTGTCATAAAACTT--GCTGGT-----GTGT-------CAC--AAAGATGGATTTATTTTCAGAAGAGA-----------------------------------------------------------------------------------GAAGGTTATTTTCAACCTTCAAAACATTTTTACCAAAAATTA--CTA------ATATAAGTAACATGCTTGCTGTAAAGCATTCGAACAATTCAAATGCAGA--T----AAAGTAGAAAACCCAAGTCTTCACC--TACCTGTCCCCTAAGATATTATTACTTATTCTTAACACACTTTA-TTAAGAAAAGAGAAAGAGAATCTTAT-CCCATCTACAACCTTC
i otoGar3.GL873548          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=73776.000000
s hg38.chr15_KI270850v1_alt    288053 12 +    430880 -------AAAAGGC-----------CTTTA
s gorGor5.CYUI01015946v1       120450 12 -    378907 -------AAAAGGC-----------CTTTA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19248721 12 - 121039945 -------AAAAGGC-----------CTTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107042382 12 - 169600520 -------aaaaGGC-----------CTTTA
i rheMac8.chr7              I 315 C 0
s macFas5.chr7               65397860 12 + 171882078 -------aaaaGGC-----------CTTTA
i macFas5.chr7              I 266 C 0
s macNem1.NW_012011056v1        46381 12 +   6271500 -------AAAAGGC-----------CTTTA
i macNem1.NW_012011056v1    C 0 I 452
s cerAty1.NW_012001384v1        40977 12 -   5160157 -------AAAAGGC-----------CTTTA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3876230 12 +  24206276 -------AAAAGGC-----------CTTTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       376103 12 -   1458659 -------AAAAGGC-----------CTTTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3822741 12 -   4111199 -------AAAAGGC-----------CTTTA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49575249 12 +  54856640 -------AAAAGGC-----------CTTTA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39815048 12 +  42888418 -------AAAAGGC-----------CTTTA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9373274 30 -  19069880 AATGGTAGGAAGGCAAGAAAGATCACTTTA
i otoGar3.GL873548          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=16698.000000
s hg38.chr15_KI270850v1_alt    288065 4 +    430880 -CAAC
s gorGor5.CYUI01015946v1       120462 4 -    378907 -CAAC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19248733 4 - 121039945 -CAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107042394 4 - 169600520 -CAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65397872 4 + 171882078 -CAAC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1        40989 4 -   5160157 -CAAC
i cerAty1.NW_012001384v1    C 0 I 426
s chlSab2.chr29               3876242 4 +  24206276 -CAAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       376115 4 -   1458659 -CAAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3822753 4 -   4111199 -CAAC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49575261 4 +  54856640 -CAAC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39815060 4 +  42888418 -CAAC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9373304 4 -  19069880 AAAA-
i otoGar3.GL873548          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e macNem1.NW_012011056v1        46393 452 +   6271500 I

a score=247995.000000
s hg38.chr15_KI270850v1_alt    288069 112 +    430880 TTCTTTGTAATTacacacacacacacacacacacacacaca-cacacacacagagtggggaaggagagggagggggtggggga------------aggagggagggaCAGACAGACACAT-ACACT
s gorGor5.CYUI01015946v1       120466 108 -    378907 TTCTTTGTAATT----acacacacacacacacacacacaca-cacacacacagagtggggaaggagagggagggggtggggga------------aggagggagggaCAGACAGACACAT-ACACT
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19248737 108 - 121039945 TTCTTTGTAATG----acacacacacacacacacacacaca-cacacaTACAgagtggggaaggagagggagggggtggggga------------aggagggagtgaCAGACAGACACAT-ACACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107042398 102 - 169600520 TTCTTTGTAATT----------acacacacacagagacaca-cacacacacaGAGTGGGGAAGGAGAGGGCGGGGTCGGGGGA------------AAGAGGGAAGGACAGACAGACACAT-ACACT
i rheMac8.chr7              C 0 I 30
s macFas5.chr7               65397876 102 + 171882078 TTCTTTGTAATT----------acacacacacagagacaca-cacacacacaGAGTGGGGAAGGAGAGGGCGGGGTCGGGGGA------------AAGAGGGAAGGACAGACAGACACAT-ACACT
i macFas5.chr7              C 0 I 30
s chlSab2.chr29               3876246 116 +  24206276 TTCTTTGTAATT--------acacacacacagagacacaca-cacacacacaGAGTGGGGAAGGAGAAGGCGGGGTCGGGGGAAAGAGGGGGGGGAAGAGGGAAGGACAGACAGACACAT-ACACT
i chlSab2.chr29             C 0 I 30
s manLeu1.NW_012105520v1       376119 102 -   1458659 TTCTTTGTAATT----------acacacacagagagacaca-cagacacacaGAGTGGGGAAGGAGAGGGTGGGGTCGGGGGA------------AAGAGGGAAGGACAGACAGACACAT-ACACT
i manLeu1.NW_012105520v1    C 0 I 30
s colAng1.NW_012116021v1      3822757 102 -   4111199 TTCTTTGTAATT----------acacacacagagacacaca-cacacactcaGAGTGGGGAAGGAGAGGGAGGGGTTGGGGGA------------AAGAGGGAAGGACAGACAGACACAT-ACACT
i colAng1.NW_012116021v1    C 0 I 30
s saiBol1.JH378108           49575265  98 +  54856640 TTCTTTGTACTT----------ACACACAGACACAGACGGGGCGGGGGCAGTGGTGGGGGAA-GGGAGGGCGGG---GAGGGG------------CAAAGACAAGGACAGACAG--ACATAATACT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39815064  90 +  42888418 TTCTTTGTACTT----------ACACACAGACACACACGGG-----------GGCGGGGGAAGGGGAGGGCGGG---GAGGGG------------CAAAGACAGGGACAGACAGACACATAACACT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9373308  27 -  19069880 GCCTTTATAATT----------ATACACACATATACT-----------------------------------------------------------------------------------------
i otoGar3.GL873548          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        40993 426 -   5160157 I
e macNem1.NW_012011056v1        46393 452 +   6271500 I

a score=1524980.000000
s hg38.chr15_KI270850v1_alt    288181 276 +    430880 TCAATGT-AAGGCTTATTATAAAACGTACAAAAAAGG-CGAGAAAACAGAGATGGGTGGGAGACGGGCCTGC-AATTTCAATATCTGAAGTC-AAAACAACTTATTAGGAGATAATTTAGAATG-CTTCCTGTCAACCCTATTTGGGGAAAATATTGATTTGATAAAAGGTTACGGACTGAAATCAAAAAGTAGCTGCCTTTTGAAGGTCAATTAATCCTTTGGTTTTAGGATAAACTAAAATGTTACAAAACAC------ACACAGTGAAACACACAGAGAACTCA
s gorGor5.CYUI01015946v1       120574 276 -    378907 TCAATGT-AAGGCTTATTATAAAACGTACAAAAAAGG-TGAGAAAACAGAGATGGGTGGGAGACGGGCCTGC-AATTTCAATATCTGAAGTC-AAAACAACTTATTAGGAGATAATTTAGAATG-CTTCTTGTCAACCCTATTTGGGGAAAATATTGATTTGATAAAAGGTTACGGACTAAAATCAAAAAGTAGCTGCCTTTTGAAGGTCAATTAATCCTTTGGTTTTAGGAAAAACTAAAATGTTACAAAACAC------ACACAGTGAAACATACAGAGAACTCA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19248845 276 - 121039945 TCAATGT-AAGACTTATTATAAAACATACAAAAACGG-TGAGAAAACAGAGATGGGTGGGAGATGGGCCTGC-AATTTCAATATCCGAAGTC-AAAACAACTTATTAGGAGATTATTTAGAACG-CTTCTTGTCAACCCTATTTGGGGAAAATATTGATTTGATAAAAGGTTACAGACTAATATCAAAAAGTAGCTGCCTTTTGAAGGTCAATCAATCCTTTGGTTTTAGGAAAAACTAAAATGTTACAAAACAC------ACACAGTGAAACATACAGAGAACGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107042530 277 - 169600520 TCAATGT-AAGACTTATTATTAAACATACCAAAAAAG-TGAGAAAACAGAGATGGGTGGGAGATGGGCCTGC-AATTTCAACATCCGAGGTC-AAAACAACTTATTAGGAGATAATTTAGAATGTCTTCTTGTCAACCCTATTTGGGGAAAATATTGCTTTGATAAAAGGTTACAGACTAACATCAAAAAGGAGCCGCCTTTTGAAGGTCAATCAATCCTTTGGTTTTAGGAAAAACTAAAATCTTACAAAACAC------TGACAGTAAAACATACAGAGAACTCA
i rheMac8.chr7              I 30 C 0
s macFas5.chr7               65398008 277 + 171882078 TCAATGT-AAGACTTATTATTAAACATACCAAAAAAG-TGAGAAAACAGAGATGGGTGGGAGATGGGCCTGC-AATTTCAACATCCGAGGTC-AAAACAACTTATTAGGAGATAATTTAGAATGTCTTCTTGTCAACCCTATTTGGGGAAAATATTGCTTTGATAAAAGGTTACAGACTAACATCAAAAAGGAGCCGCCTTTTGAAGGTCAATCAATCCTTTGGTTTTAGGAAAAACTAAAATCTTACAAAACAC------TGACAGTAAAACATACAGAGAACTCA
i macFas5.chr7              I 30 C 0
s macNem1.NW_012011056v1        46845 277 +   6271500 TCAATGT-AAGACTTATTATTAAACATACCAAAAAAG-TGAGAAAACAGAGATGGGTGGGAGATGGGCCTGC-AATTTCAACATCCGAGGTC-AAAACAACTTATTAGGAGATAATTTAGAATGTCTTCTTGTCAACCCTATTTGGGGAAAATATTGCTTTGATAAAAGGTTACAGACTAACATCAAAAAGGAGCCGCCTTTTGAAGGTCAATCAATCCTTTGGTTTTAGGAAAAACTAAAATCTTACAAAACAC------TGACAGTAAAACATACAGAGAACTCA
i macNem1.NW_012011056v1    I 452 C 0
s cerAty1.NW_012001384v1        41419 277 -   5160157 TCAATGT-AAGACTTATTATTAAACATACCAAAAAAG-TGAGAAAACAGAGATGGGTGGGAGATGGGCCTGC-AATTTCAACATCCGAGGTC-AAAACAACTTATTAGGAGATAATTTAGAATGTCTTCTTGTCAACCCTATTTGGGGAAAATATTGCTTTGATAAAAGGTTACAGACTAACATCAAAAAGGAGCTGCCTTTTGAAGGTCAATCAATCCTTTGGTTTTAGGAAAAACTAAAATCTTACAAAACAC------TGACAGTAAAACATACAGAGAACTCA
i cerAty1.NW_012001384v1    I 426 C 0
s chlSab2.chr29               3876392 277 +  24206276 TCAATGT-AAGACTTATTATTAAACATACCAAAAAAG-TGAGAAAACAGAGATGGGTGGGAGATGGGCCTGC-AATTTCAACATCTGAGGTC-AAAACAACTTATTAGGAGATAATTTAGAATGTCTTCTTGCCAACCCTATTTGGGGAAAATATTGCTTTGATAAAAGGTTACAGACTAACATCAAAAAGGAGCTGCCTTTTGAAGGTCAATCAATCCTTTGGTTTTAGGAAAAACTAAAATGTTACAAAACAC------TGACAGTAAAACATACAGAGAACTCA
i chlSab2.chr29             I 30 C 0
s manLeu1.NW_012105520v1       376251 283 -   1458659 TCAATGT-AAGACTTATTATTAAACATACCAAAAAAG-TGAGAAAACAGAGATGGGTGGGAGATGGGCCTGC-AATTTCAACATCCGAGGTC-AAAACAACTTATTAGGAGATAATTTAGAATGTCTTCTTGTCAACCCTATTTGGGGAAAATATTGCTTTGATAAAAGGTTACAGACTAACATCAAAAAGGAGCTGCCTTTTGAAGGTCAATCAATCCTTTGGTTTTAGGAAAAACTAAAATATTACAAAACATACTGTATGACAGTAAAACATACAGAGAACTCA
i manLeu1.NW_012105520v1    I 30 C 0
s colAng1.NW_012116021v1      3822889 276 -   4111199 TCAATGT-AAGACTTATTATAAAACATA-AAAAAAGG-TGAGAAAACAGAGATGGGTGGGAGATGGGCCTGC-AATTTCAACATCCGAAGTC-AAAACAACTTATTAGGAGATAATTTAGAATGTCTTCTTGTCAACCCTATTTGGGGAAAATATTGCTTTGATAAAAGGTTACAGACTAACATCAAAAAGGAGCTGCCTTTTGAAGGTCAATCAATCCTTTGGTTTTAGGAAAAACTAAAATGTTACAAAACAC------TGACAGTAAAACATACAAAGAACTCA
i colAng1.NW_012116021v1    I 30 C 0
s saiBol1.JH378108           49575363 275 +  54856640 TCAATGTAAAGACTTATTAGAAAACAT-TTTTAAAAA-AG--AAAAC--AGACGGGTGGGAGATGGGCCTGCAAATTGCAATATCCAAAGTTAAAAAAAAATTATTATGAGATAATTTAGATTGTCTACTTATTAACCCTATTTGGGGAAAATATTGATTTGATAAAAGGTTACAGACTAACATCAAAAAGTAGCTGCCTTTTGAAAGTCAATCAATTTTTTGGTTTTACGAAAAACTAAAATGCTACAAAACAC------TGACAGTGAAACATAAAGAGAACTTA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39815154 273 +  42888418 TCAATGTAAAGACTTATTAGAAAACAT-TAAAAAAAA-TGACAAAAC--AGATGGGTGGGAGATGGGCCTGC-AATTTCAATATCCAAAGTC-AAAAAAATTTATTAGGATATAATTTAGAATATCTACTTGTCAACCCTATTTGGGGAAAATATTAATTTGATAAAAGGTTACAGACTAACATCAAAAAGTAGCTGCCTTTTGAAAGTCAATCAATTTTTTGGTTTTACGAAAAAC--AAATGCTACAAAACAC------TGACAGTGAAACATACAGAGAACTTA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9373335 181 -  19069880 TCAACAT-AAGA-TTATTAGAAAACATGCAAAAAAAGATGAGAAAATTTAAA--AACCGGAGATGTGACTCC-ACTTTCAATACCTGAAGGC-----------------------------------------------------------------------------------------------AAAGGGGCTGCCTTTTGAAGGTCAATCAATCATCTGGTTTCAGTAAAACCTAATATATTACAAAATAT------TGACAGTGAAACATACAGAGAACTCA
i otoGar3.GL873548          C 0 I 26257
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=7098.000000
s hg38.chr15_KI270850v1_alt    288457 1 +    430880 A
s gorGor5.CYUI01015946v1       120850 1 -    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19249121 1 - 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107042807 1 - 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65398285 1 + 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        47122 1 +   6271500 A
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        41696 1 -   5160157 A
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3876669 1 +  24206276 A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       376534 1 -   1458659 A
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3823165 1 -   4111199 A
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49575638 1 +  54856640 A
i saiBol1.JH378108          C 0 I 38561
s aotNan1.NW_018505940v1     39815427 1 +  42888418 A
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9399773 1 -  19069880 A
i otoGar3.GL873548          I 26257 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=6006.000000
s hg38.chr15_KI270850v1_alt    288458 1 +    430880 A
s gorGor5.CYUI01015946v1       120851 1 -    378907 A
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19249122 1 - 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107042808 1 - 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65398286 1 + 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        47123 1 +   6271500 A
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        41697 1 -   5160157 A
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3876670 1 +  24206276 A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       376535 1 -   1458659 A
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3823166 1 -   4111199 A
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1     39815428 1 +  42888418 A
i aotNan1.NW_018505940v1    C 0 I 38799
s otoGar3.GL873548            9399774 1 -  19069880 A
i otoGar3.GL873548          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e saiBol1.JH378108           49575639 38561 +  54856640 I

a score=648956.000000
s hg38.chr15_KI270850v1_alt    288459 157 +    430880 CTGACCTAACTACATTTATCCTCTCCTTCCCAATTATCCTT----TATCACTAATTTCCCCAAACTACTACTCtattagtttcctattgctgttaacaacaaattatcacaaactcagtggcttaagacaacacaaatttattatcatgttatcatttctg
s gorGor5.CYUI01015946v1       120852 157 -    378907 CTGACCTAACTACATTTATCCTCTCCTTCCCAATTATCCTT----TATCACTAATTTCCCCAAACTACTACTCtattagtttcctattgctgttaacaacaaatgatcacaaactcagtggcttaagacaacacaaatttattatcatgttatcatttctg
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19249123 156 - 121039945 CTGATCTAACTGCATTTATCCTCTCCTTCCCAATTATCCTT----TATCACTAATTTCCCCAAACTACTACTCCatta-tttcctattgctgttaacaacaaatcatcacaaactcagtggcttaagacaacacaaatttattatcatattatcatttctg
i nomLeu3.chr6              C 0 I 3143
s rheMac8.chr7              107042809 156 - 169600520 CTGATCTAACTGCACTTATCCTCTCCTTGCCAATTATTCTT----TATCACTAATTTTCCCAAACTACCATTCtattagtttcacattgctgtt-acaacaaattatcacaaactcagcggcttaagacaacacaaatttattatcatattatcatttctg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65398287 156 + 171882078 CTGATCTAACTGCACTTATCCTCTCCTTGCCAATTATTCTT----TATCACTAATTTTCCCAAACTACCATTCtattagtttcacattgctgtt-acaacaaattatcacaaactcagtggcttaagacaacacaaatttattatcatattatcatttctg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        47124 156 +   6271500 CTGATCTAACTGCACTTATCTTCTCCTTGCCAATTATTCTT----TATCACTAATTTTCCCAAACTACCATTCtattagtttcacattgctgtt-acaacaaattatcacaaactcagtggcttaagacaacacaaatttattatcatattatcatttctg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        41698 156 -   5160157 CTGATCTAACTGCACTTATCCTCTCCTTGCCAATTATTCTT----TATCACTAATTTTCCCAAACTACCATTCtattagtttcacattgctgtt-acaacaaattatcacaaactcagtggcttaagacaacacaaatttattatcatattatcatttctg
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3876671 156 +  24206276 CTGATCTAACTGCACTTATCCTCTCCTTCCCAATTATCCTT----TATCACTAATTTTCCCAAACTACTATTCtattagtttcatattgctgtt-acaacaaattatcacaaactcagtggcttaagacaacacaaatgtattaccacattatcatttctg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       376536 156 -   1458659 CTGATCTAACTGCACTTATCCTCTCCTTGCCAATTATCCTT----TATCACTAATTTTCCCACTCTACTATTCtattagtttcatattgctgtt-acaacaaattatcacaaactcagtggcttaagacaacacaaatgtattatcatattatcatttctg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3823167 156 -   4111199 CTGATCCAACTGCACTTATCCTCTCCTTGCCAATTATCCTT----TATCACTAATTTTCCCAAACTACTATTCtattagtttcatattgctgtt-acaacaaattattacaaactcagtggcttaagacaacacaaatttattatcatattatcatttctg
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873548            9399775 127 -  19069880 CTGGCCTATCTACATCTACCCTCTCCTTCCCCATTATCCCTCTCCTAGCACTCATtttcc------------------------tattgctgtt------aaattaccacaaactcagcggcttaaaacaacacaaatttatt---ctatta-caattcta
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39815429 38799 +  42888418 I
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e saiBol1.JH378108           49575639 38561 +  54856640 I

a score=608904.000000
s hg38.chr15_KI270850v1_alt    288616 182 +    430880 gaagtcaaaagtccaaaatgactttcacttgtttaaaaatcaaagtgccagcagggctgtgttccttctagagtctctatgtggagaaagtgttcttttgctatttccagcttctagagctgcattctgtggctcatgggctccttcctccatgttctaagccagcagtgtagcatcttcaa
s gorGor5.CYUI01015946v1       121009 182 -    378907 gaagtcaaaagtccaaaatgactttcacttgtttaaaaatcaaggtgccagcagggctgtgttccttctagagtctctatgtggagaaagtgttcttttgctatttccagcttctagagctgcattctgtggctcatgggctccttcctccatgttctaagccagcagtgtAGCATCTTCaa
i gorGor5.CYUI01015946v1    C 0 C 0
s rheMac8.chr7              107042965 180 - 169600520 gaagtcagaagtccgaaatgactttcatttgtttaaaattcaaggcgctggcagggctgtgttccttctagagtc--tgtgtggagaaagtgttcttttgccatttccagcttctagagctgcattccgtggctcatggcctccttcttccatgttctaagccagcagtgtagcatcttcaa
i rheMac8.chr7              C 0 I 2634
s macFas5.chr7               65398443 180 + 171882078 gaagtcagaagtccgaaatgactttcatttgtttaaaattcaaggcgctggcagggctgtgttccttctagagtc--tgtgtggagaaagtgttcttttgccatttccagcttctagagctgcattccgtggctcatggcctccttcttccatgttctaagccagcagtgtagcatcctcaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        47280 180 +   6271500 gaagtcagaagtccgaaatgactttcatttgtttaaaattcaaggcgctggcagggctgtgttccttctagagtc--tgtgtggagaaagtgttcctttgccatttccagcttctagagctgcattccgtggctcatggcctccttcttccatgtcctaagccagcagtgtagcatcctcaa
i macNem1.NW_012011056v1    C 0 I 2636
s cerAty1.NW_012001384v1        41854 180 -   5160157 gaagtcagaagtccgaaatgactttcatttgtttaaaattcaaggcgctggcagggctgtgttccttctagagtc--tgtgtggagaaagtgttcttttgccatttccagcttctagagctgcattccgtggctcatggcctccttcttccatgttctaagccagcagtgtagcatcctcaa
i cerAty1.NW_012001384v1    C 0 I 2639
s chlSab2.chr29               3876827 182 +  24206276 gaagtcagaagtccgaaatgactttcatttgtttaaaattcaaggcgctggcagggctgtgttccttctagagtctttgtgtggagaaagtgttcttttgccatttccagcttctagagctgcattccgtggctcatggcctccttcttccatgttctaagccagcagtgtagcatcctcaa
i chlSab2.chr29             C 0 I 2647
s manLeu1.NW_012105520v1       376692 180 -   1458659 gaagtcagaagtccgaaatgactttcatttgtttaaaattcaaggcgctggcagggctgtgttccttctagagtc--tgtgtggagaaagtgttcttttgccatttccagcttctagagctgcattccgtggctcatggcctccttcttccatgttctaagccagcagtgtagcatcctcaa
i manLeu1.NW_012105520v1    C 0 I 2700
s colAng1.NW_012116021v1      3823323 182 -   4111199 gaagtcagaagtccgaaatgactttcatttgtttaaaattcacggcgctgacagggctgtgttccttctagagtctctgtgtggagaaagtgttcttttgccatttccagcttctagagctgcattccattgctcatggtctccttcttccatgttctaagccagcagtgtagcatcctcaa
i colAng1.NW_012116021v1    C 0 I 2615
s otoGar3.GL873548            9399902 131 -  19069880 gagatcctagatctgaaataacttt-acttggctaaaaatcaaagtatcagcaaggctgcattc-------------------------------------------------caggagctgcattccttggttcatggtcccctcctt-tatctttaaagccagcaatgtatcatcaacaa
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39815429 38799 +  42888418 I
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               19249279 3143 - 121039945 I
e saiBol1.JH378108           49575639 38561 +  54856640 I

a score=2451.000000
s hg38.chr15_KI270850v1_alt    288798 9 +    430880 tcacctgac
s gorGor5.CYUI01015946v1       121191 9 -    378907 tcacctgac
i gorGor5.CYUI01015946v1    C 0 C 0
s macFas5.chr7               65398623 9 + 171882078 atctctgac
i macFas5.chr7              C 0 I 2606
s otoGar3.GL873548            9400033 9 -  19069880 atctctgac
i otoGar3.GL873548          C 0 I 991
e aotNan1.NW_018505940v1     39815429 38799 +  42888418 I
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3823505 2615 -   4111199 I
e manLeu1.NW_012105520v1       376872 2700 -   1458659 I
e chlSab2.chr29               3877009 2647 +  24206276 I
e cerAty1.NW_012001384v1        42034 2639 -   5160157 I
e macNem1.NW_012011056v1        47460 2636 +   6271500 I
e rheMac8.chr7              107043145 2634 - 169600520 I
e nomLeu3.chr6               19249279 3143 - 121039945 I
e saiBol1.JH378108           49575639 38561 +  54856640 I

a score=167197.000000
s hg38.chr15_KI270850v1_alt    288807 1930 +    430880 aaaatccaacacgttttcatcataaaaatggtcaaagtaggaatagaagggaacgtcctcatctaacaaaaggtacctgtgaaaaacccacacctaacaacatcatacttaatggggaaagcttggatgctttctctttcagatcagtagcaagacaaggatgtttgtgctcaccacttctattcaatgttgtaccagagatgcttctcagggcgattaggcaagaaaaagaaataaaaggcatccagattggaaaggaagaaaacgatctccaactacttcatcctgtacatagaaaatcctaaggcatccacttaagagctgttgccaaacaaacaagccagattatagtctataattgacctctgaaacaaggctacagtttcagagaccggtatgcaaaaatcaatagtatttctatatataatcaatgaacaatcaaaaactgaacaattaagataacaaaattaacaatcgcatcaaaatgaataaaatcataagcaacaaatttcaagaaagtaccaagtttatacaatgaacactacaaaacactgttgaaagaaatcaaagacaacctaaatgaaaggaatcaaattcagcatccagaaaaaattcctcacatttatgatcaatttcaacaacgatgcccaagacaattcaattggggaaagaacagtcttttcaacaaatgcttctggaacatctagagatccacatgcaaaagaaaaaagttggactcttcccttacaaaacacacaaaaatgaactctcacattacatacctaaatgtaagagctaaacctataaaatttctagaagaaaacataggagtaaatctctgtgactctgggttaggcaaagaattgttcttagatatgatgccaaaaaaaaatcaacaacagaacattatcaaaactgaaaattttgcttgaaaggatagcatcaaggaagtgaaatgacaacccacagaatgagagataatttttgcaaatcatgtatctgataagggacctgtagtcagaatatgcaaagaacccttacaattcaataagacaacccaatttaaaaacaggcaaaggatgtgaataggcatttctccaaagatacggaaaaacggccaataagcacataaaaagatgctcaaaatcatttgccatttgggaaatgcaatcaaaaccacaatgaggtatcacttcacgcccattagggtggctatagatcagaaagtcagataacatgtgttggcaagcacatggaaacactgaagtccttacacactgctggtaggaatgtaaaatggtgcagccactgtggaaaacagttttccaatttctcaaaatgttaaacacagttatcatacacccaagcaattctactcttaggtatatacccaagagaaatgaaaacatatgtcttcaccagaacttgctgttcacagcagcattatgcataatagaccaaaagtggaaacaactcaactgcccatcaactggtgaatggataagtaaaatgtgatgtaaccagtcattggactgtcattcattaataaaaagaacaaggtactgattcatgttctaacatgagtgaatcttgaaaacactatgctaaattaaagaagccagtcacaaaaggccgtgtattgcatgattttatatatacatgaacttt--tatatatatataattatatata-----ttatatataattttatatatataaatttct---atatataa-------atatataaaatcatatatatgatatatattttttcatatacatcatatatatttacaaaaattatatatcatatatcatatgatatatgagatatatat--catgatatatatgatatatgatatatatcatatgagatatatgatatcatgagatatatgatatcatatgatatatatgatata-gatatcatatgatatatat
s gorGor5.CYUI01015946v1       121200 1922 -    378907 aaaatccaacacgttttcatcataaaaatggtcaaagtaggaatagaagggaacgtcctcatctaacaaaaggtacctgtgaaaaacccacacctaacaacctcatacttaatggtgaaagcttggatgctttctctttaagatcagtagcaagacaaggatgtttgcgctcaccacttctattcaatgttgtaccagagatgcttctcagggcgattaggcaagaaaaagaaataaaaggcatccagattggaaaggaagaaaacgatctccaactacttcatcctgtacatagaaaatcctaaggcatccacttaagagctgttgccaaacaaacaagccagattatagtctataattgacctctgaaacaaggctacagtttcagagaccggtatgcaaaaatcaatagtatttctacatataatcaatgaacaatcaaaaactgaaccattaagataacaaaattaacaatcgcatcaaaatgaataaaatcataagcaacaaatttcaagaaagtaccaagtttatacaatgaacactacaaaacactgttgaaagaaatcaaagacaacctaaatgaaaggaatcaaattcagcatccagaaaaaattcctcacatttatgatcaatttcaacaacgatgcccaagacaattcaattggggaaagaatagtcttttcaacaaatgcttctggaacatctagagatccacatgcaaaagaaaaaagttggactcttcccttacaaaacacacaaaaatgaactctcacattacatacctaaatgtaagagctaaacctataaaatttctagaagaaaacataggagtaaatctctgtgactctgggttaggcaaagaattgttcttagatatgatgccaaaaaaaaatcaacaacagaacattatcaaaactgaaaattttgcttgaaaggatagcatcaaggaagtgaaatgacaacccacagaatgagagataacttttgcaaatcatgtatctgataagggacctgtagtcagaatatacaaagaacccttacaattcaataagacaacccaatttaaaaacaggcaaaggatgtgaataggcattcctccaaagataaggaaaaacggccaataagcacacaaaaagatgctcaaaatcattagccatttgggaaatgcaatcaaaaccacaatgaggtatcacttcacgcccattagggtggctatagatcagaaagtcagataacatgtgttggcaagcacatggaaacactgaagtccttatacactgctggtaggaatgtaaaatggtgtagccactgtggaaaacagttttccaatttctcaaaatgttaaacacagttatcatacacccaagcaattctactcttaggtatatacccaagagaaatgaaaacatatgtcttcaccagaacttgctgttcacagcagcattatgcataatagaccaaaagtggaaacaactcaactgcccatcaactggtgaatggataagtaaaatgtgatgtatccagtcactggactgtcattcattaataaaaagaacaaggtactgatccatgttctaacatgagtgaatcttgaaaacactatgctaaattaaagaagccagtcacaaaaggccgtgtagtgcatgattttatatataCATGAACTTTtatatatatatataattatatatataaatttatatataa------atatataaaattatatcatatatgatttttttatttat---atcatatatcaaatatatat-------gatatatcatatatatttgcaaaaattatatatcatatatcatatgatatatgagatatatatgatatgatatatatgatatatg----atatcatatgatatatat-at-------gatatatgatatcatatgatatatatgatatatgatatcatatgatatatat
i gorGor5.CYUI01015946v1    C 0 I 82
e aotNan1.NW_018505940v1     39815429 38799 +  42888418 I
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464    0 -   1040364 I
e canFam3.chr30               1743556    0 -  40214260 I
e otoGar3.GL873548            9400042  991 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3823505 2615 -   4111199 I
e manLeu1.NW_012105520v1       376872 2700 -   1458659 I
e chlSab2.chr29               3877009 2647 +  24206276 I
e cerAty1.NW_012001384v1        42034 2639 -   5160157 I
e macNem1.NW_012011056v1        47460 2636 +   6271500 I
e macFas5.chr7               65398632 2606 + 171882078 I
e rheMac8.chr7              107043145 2634 - 169600520 I
e nomLeu3.chr6               19249279 3143 - 121039945 I
e saiBol1.JH378108           49575639 38561 +  54856640 I

a score=0.000000
s hg38.chr15_KI270850v1_alt    290737 436 +    430880 ataatatatatatgatagatatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatatcatattatatatgatagatatgatagatat
e aotNan1.NW_018505940v1     39815429 38799 +  42888418 I
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873548            9400042 991 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3823505 2615 -   4111199 I
e manLeu1.NW_012105520v1       376872 2700 -   1458659 I
e chlSab2.chr29               3877009 2647 +  24206276 I
e cerAty1.NW_012001384v1        42034 2639 -   5160157 I
e macNem1.NW_012011056v1        47460 2636 +   6271500 I
e macFas5.chr7               65398632 2606 + 171882078 I
e rheMac8.chr7              107043145 2634 - 169600520 I
e nomLeu3.chr6               19249279 3143 - 121039945 I
e saiBol1.JH378108           49575639 38561 +  54856640 I
e gorGor5.CYUI01015946v1       123122  82 -    378907 I

a score=890.000000
s hg38.chr15_KI270850v1_alt    291173 22 +    430880 catattatatatgatatcatat
s nomLeu3.chr6               19252422 22 - 121039945 catgtattgcatgattttatat
i nomLeu3.chr6              I 3143 C 0
e aotNan1.NW_018505940v1     39815429 38799 +  42888418 I
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9400042 991 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3823505 2615 -   4111199 I
e manLeu1.NW_012105520v1       376872 2700 -   1458659 I
e chlSab2.chr29               3877009 2647 +  24206276 I
e cerAty1.NW_012001384v1        42034 2639 -   5160157 I
e macNem1.NW_012011056v1        47460 2636 +   6271500 I
e macFas5.chr7               65398632 2606 + 171882078 I
e rheMac8.chr7              107043145 2634 - 169600520 I
e saiBol1.JH378108           49575639 38561 +  54856640 I
e gorGor5.CYUI01015946v1       123122 82 -    378907 I

a score=778.000000
s hg38.chr15_KI270850v1_alt    291195 20 +    430880 atataccacat-acatcatat
s nomLeu3.chr6               19252444 20 - 121039945 atacatgaact-tttacatat
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378108           49614200 21 +  54856640 atgtattgcatgactacatat
i saiBol1.JH378108          I 38561 C 0
e aotNan1.NW_018505940v1     39815429 38799 +  42888418 I
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9400042 991 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3823505 2615 -   4111199 I
e manLeu1.NW_012105520v1       376872 2700 -   1458659 I
e chlSab2.chr29               3877009 2647 +  24206276 I
e cerAty1.NW_012001384v1        42034 2639 -   5160157 I
e macNem1.NW_012011056v1        47460 2636 +   6271500 I
e macFas5.chr7               65398632 2606 + 171882078 I
e rheMac8.chr7              107043145 2634 - 169600520 I
e gorGor5.CYUI01015946v1       123122 82 -    378907 I

a score=1636.000000
s hg38.chr15_KI270850v1_alt    291215 5 +    430880 ataca
s gorGor5.CYUI01015946v1       123204 5 -    378907 ataca
i gorGor5.CYUI01015946v1    I 82 C 0
s nomLeu3.chr6               19252464 5 - 121039945 atata
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378108           49614221 5 +  54856640 atcta
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018505940v1     39815429 38799 +  42888418 I
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873548            9400042 991 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3823505 2615 -   4111199 I
e manLeu1.NW_012105520v1       376872 2700 -   1458659 I
e chlSab2.chr29               3877009 2647 +  24206276 I
e cerAty1.NW_012001384v1        42034 2639 -   5160157 I
e macNem1.NW_012011056v1        47460 2636 +   6271500 I
e macFas5.chr7               65398632 2606 + 171882078 I
e rheMac8.chr7              107043145 2634 - 169600520 I

a score=3643.000000
s hg38.chr15_KI270850v1_alt    291220 17 +    430880 tc-------atatatacatcatat
s gorGor5.CYUI01015946v1       123209 17 -    378907 tc-------atatatacatcatat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19252469 15 - 121039945 t--------atatatatat-atat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65401238 17 + 171882078 tt-------atatatacatgaact
i macFas5.chr7              I 2606 C 0
s saiBol1.JH378108           49614226 23 +  54856640 tcgatatagatatagatat-agat
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018505940v1     39815429 38799 +  42888418 I
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9400042 991 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3823505 2615 -   4111199 I
e manLeu1.NW_012105520v1       376872 2700 -   1458659 I
e chlSab2.chr29               3877009 2647 +  24206276 I
e cerAty1.NW_012001384v1        42034 2639 -   5160157 I
e macNem1.NW_012011056v1        47460 2636 +   6271500 I
e rheMac8.chr7              107043145 2634 - 169600520 I

a score=-4402.000000
s hg38.chr15_KI270850v1_alt    291237 5 +    430880 atatc--
s gorGor5.CYUI01015946v1       123226 5 -    378907 atatc--
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19252484 4 - 121039945 atat---
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7               65401255 2 + 171882078 tt-----
i macFas5.chr7              C 0 C 0
s saiBol1.JH378108           49614249 3 +  54856640 ata----
i saiBol1.JH378108          C 0 I 1
s otoGar3.GL873548            9401033 5 -  19069880 --attcc
i otoGar3.GL873548          I 991 C 0
e aotNan1.NW_018505940v1     39815429 38799 +  42888418 I
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3823505 2615 -   4111199 I
e manLeu1.NW_012105520v1       376872 2700 -   1458659 I
e chlSab2.chr29               3877009 2647 +  24206276 I
e cerAty1.NW_012001384v1        42034 2639 -   5160157 I
e macNem1.NW_012011056v1        47460 2636 +   6271500 I
e rheMac8.chr7              107043145 2634 - 169600520 I

a score=17833.000000
s hg38.chr15_KI270850v1_alt    291242 4 +    430880 atac
s gorGor5.CYUI01015946v1       123231 4 -    378907 atat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19252488 4 - 121039945 atat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107045779 4 - 169600520 atat
i rheMac8.chr7              I 2634 C 0
s macFas5.chr7               65401257 4 + 171882078 atat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        50096 4 +   6271500 atat
i macNem1.NW_012011056v1    I 2636 C 0
s cerAty1.NW_012001384v1        44673 4 -   5160157 atac
i cerAty1.NW_012001384v1    I 2639 C 0
s manLeu1.NW_012105520v1       379572 4 -   1458659 atat
i manLeu1.NW_012105520v1    I 2700 C 0
s colAng1.NW_012116021v1      3826120 4 -   4111199 atat
i colAng1.NW_012116021v1    I 2615 C 0
s saiBol1.JH378108           49614253 4 +  54856640 atat
i saiBol1.JH378108          I 1 C 0
s otoGar3.GL873548            9401038 4 -  19069880 atat
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39815429 38799 +  42888418 I
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29               3877009 2647 +  24206276 I

a score=30085.000000
s hg38.chr15_KI270850v1_alt    291246 6 +    430880 atatat
s gorGor5.CYUI01015946v1       123235 6 -    378907 atatat
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19252492 6 - 121039945 atatat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107045783 6 - 169600520 atatat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65401261 6 + 171882078 atatat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        50100 6 +   6271500 atatat
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        44677 6 -   5160157 atatat
i cerAty1.NW_012001384v1    C 0 C 0
s manLeu1.NW_012105520v1       379576 6 -   1458659 atatat
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3826124 6 -   4111199 atatat
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49614257 6 +  54856640 ataaat
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39854228 6 +  42888418 atatat
i aotNan1.NW_018505940v1    I 38799 C 0
s otoGar3.GL873548            9401042 6 -  19069880 acatag
i otoGar3.GL873548          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29               3877009 2647 +  24206276 I

a score=1952946.000000
s hg38.chr15_KI270850v1_alt    291252 355 +    430880 ---atgaactttccagaataggtatatcaataaagacaggaagtatacaagtggttgccacagcctgagaggagcagggaatggtgagtgactgctaatggatatggcactttttttggggggtgatgaaaatgttctg--gtcagacaatggcaat---tacaaaac----tgtatacacacgaaaaaccaaagaatcacacactttaaaagggaggatttagctcggcatggtggcatgcgcctgtactcccagttactcgggaggctgaagcaggactgcttagagcccaggacttcaagg-------------------ctgcagcgagctatgatcgctccactgcactccaacaaggatgacagtgcgagacccGTTTTC
s gorGor5.CYUI01015946v1       123241 354 -    378907 ---atgaactttccagaataggtatatcaataaagacaggaagtatacaagtggttgccacaggctgagaggagcagggaatggtgagtgactgctaatggatatggcactttttttggggggtgatgaaaatgttctg--gtcagacaatggcaat---tacaaaac----tgtatacacacgaaaaaccaaagaatcacacactttaaaagggagaatttagctcggcatggtggcatgcgcctgtactcccagttactcgggaggctgaagcaggactgcttagagcccaggacttcaagg-------------------ctgcagcgagctatgatcgctccactgcactccaacaaggatgacagtg-gagacccGTTTTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19252498 354 - 121039945 ---atgaactttccagaataggtatatcaataaagacaggaagtatgtaagtggttgccacaggctgagaggagcagggaatggtgagtgactgctaatgggtatggcaccttttttgggggctgatgaaaatgttctg--gtcagacaatggtaat---tgcaaaac----tgtacacacacgaaaaaccaaacaatcacacactttaaaagggagaatttAgctcggcatagtggcatgcgcctgtactcccagttactcaggaggctgaagcaggactgctt-gagcccaggacttcaagg-------------------ctgcagcgagctatgatcactccaccgcactccaacaaggatgacagagtgagaccAGTTTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107045789 372 - 169600520 ---atgaactttccggaataggtatgtcaataaagacaagaagtatataagtggttgtcacaggctgagaggatcagggaatggcgagtgactgctaatgggtatggcactttattt-gggggtgatgaaaatgttctg--gtcagacaatggtgat---tgcaaaac----tgtatacacacaaaaaaccaaagaatcacacgcttctaaagggaaaatttagctcggcatggtggcatgcacctgtactcccatttactcgggaggctgaagcaggactgctt-gagcccaggacttcaaggctgcagcgagctatgatcactgcagcgagctatgatcgctccactgcactccaatgaggatgacagtgcaagacccgttctc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65401267 372 + 171882078 ---atgaactttccggaataggtatgtcaataaagacaagaagtatataagtggttgtcacaggctgagaggatcagggaatggcgagtgactgctaatgggtatggcactttattt-gggggtgatgaaaatgttctg--gtcagacaatggtgat---tgcaaaac----tgtatacacacaaaaaaccaaagaatcacacgcttctaaagggaaaatttagctcggcatggtggcatgcacctgtactcccagttactcgggaggctgaagcaggactgctt-gagcccaggacttcaaggctgcagcgagctatgatcactgcagcgagctatgatcgctccaccgcactccaatgaggatgacagcgcaagacccgttctc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        50106 372 +   6271500 ---atgaactttccggaataggtatgtcaataaagacaagaagtatataagtggttgtcacaggctgagaggatcagggaatggcgagtgactgctaatgggtatggcactttattt-gggggtgatgaaaatgttctg--gtcagacaatggtgat---tgcaaaac----tgtatacacacaaaaaaccaaagaatcacacgcttctaaagggaaaatttagctcggcatggtggcatgcacctgtactcccatttactcgggaggctgaagcaggactgctt-gagcccaggacttcaaggctgcagcgagctatgatcactgcagcgagctatgatcgctccactgcactccaatgaggatgacagcgcaagacccgttctc
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        44683 373 -   5160157 ---atgaactttccagaataggtatgtcaataaagacaggaagtatataagtggttgccacaggctgagaggagcaaggaacggtgagtgactgttaatgggtatggcacttttttcggggggtgatgaaaatgttctg--gtcagacaatggtgat---tgcaaaac----cgtatacacacaaaaaaccaaagaatcacacgcttctaaagggaaaatttagctcggcatggtggcatgcacctgtactcccagttactcgggaggctgaagcaggactgctt-gagcccaggacttcaaggctgcagcgagctatgatcactgcagcaagctatgatcgctccactgcactccaatgagcatgacagcgcaagacccgttctc
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3879656 372 +  24206276 ---atgaactttccagaataggtatgtcaataaagacaggaagtatataagtggttgtcacaggctgagtggatcagggaatggcaagtgactgctaatgggtatggcactttattt-gggggtgatgaaaatgttctg--gtcagacaatggtgat---tgcaaaac----tgtatacacatgaaaaaccaaagaatcacacgcttctaaagggaaaatttagctcggcgtggtggcatgcacctgtactcccagttactcaggaggctgaagcaggactgctt-gagcccaggacttcaaggctgcagcgagctatgatcactgcagcgagctatgatcgctccaccgcactccaatgaggatgacagcgcaagacccgttctc
i chlSab2.chr29             I 2647 C 0
s manLeu1.NW_012105520v1       379582 372 -   1458659 ---atgaactttccagaataggtatgtcaataaagacaggaagtatataagtggttgtcacaggctgagaggatcagggaatggcaagtgactgctaatgggtatggcactttattt-gggggtgatgaaaatgtactg--gtcagacaatggtgat---tgcaaaac----tgtatacatacgaaaaaccaaagaatcacacgcttctaaagggaaaatttagctcattgtggtggcatgcacctgtactcccagttacttgggaggctgaagcaggactgctt-gagcccaggacttcaaggctgcagcaagctatgatcactgcagcgagctatgatcgctccaccgcactccaatgaggatgacagcgcaagacccgttctc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3826130 354 -   4111199 ---ataaactttccagaataggtatgtcaacaaagacaggaagtatataagtggttgtcacaggctgagaggatcagggaatggagagtgactgctaatgggtatggcacttttttcggggggtgatgaaaatgttctg--gtcagacaatggtgat---tgcaaaac----tgtatacacacaaaaaaccaaagaatcacacgcttttaaagggAGaatttagctcagcgtggtggcatgcacctgtactcccagtcactcgggaggctgaagcaggactgctt-gagcccaggacttcaagg-------------------ctgcagtgagccatgatcgctccaccgcactccaacgaggatgacagcgcaagacccgttctc
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49614263 358 +  54856640 ---atgaactttccagaataggtatatcaataaagacagaaagcatttaagtggttgcctcaggctgaaaggagcagggaatagtaagtgactgctgatgtatatggtgcttttttg-gggtgtgatgaaaatgttctgaagtcagagattggtgatgactgcacaac----tgtatacatactaaaagccaaagaatcacacactttaaaagggagaatttAgctcggcatggtggcatatacctgtactcccagttactcaagaggctaaggcaggattgcct-gagcccaggactgcgaag-------------------ctatagtcagctataatcactccattgcattccaacaaggatgacaatgcaagaccTGTTTTC
i saiBol1.JH378108          C 0 I 3
s aotNan1.NW_018505940v1     39854234 358 +  42888418 ---atgaactttccagaataggtatatcaataaagacagaaagtatgtaagtggttgccacaggctgaaaggagcagggaatagtaagtgactgccaatgggtatggtgcttttttg-gggggtgatgaaaatgttctgaagtcagataatggtgatgattgcacaac----tgtacacatactaaaaaccaaagaatcacacattttaaaagggagaatttAgctcggcatggtggcatacgcctgtattcccagttactcaagagaccaaggcagcattgcct-gagcccaggacttcaaag-------------------ctatagtgagctatgatcactccacagcactccaacaaggatgacaatgcaagacccgttttc
i aotNan1.NW_018505940v1    C 0 I 39
s otoGar3.GL873548            9401048 254 -  19069880 attttgaaatatccagaataggcaaatcaataaatgcagaaagtaggtaagtggttgccatgggttgagaggaacaggaaatggtgagtgactgctaggagggatggcatttctttt-tgggaagatgaaaatgttccaaagttagacaatggtgatgattactcatctctgtgtatatatattaaaaaccactgtatcatacaccttaaaggggaaaattt-----------gtggcatgt-----taatcatatct-------------caataaagctgtt------------------------------------------------------------------------------------------------------
i otoGar3.GL873548          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=148217.000000
s hg38.chr15_KI270850v1_alt    291607 49 +    430880 TAaataataataataataataa--taataaATAACCCAAGGTACCCAGTTC
s gorGor5.CYUI01015946v1       123595 49 -    378907 TAaataataataataataataa--taataaATAACCCAAGGTACTCAGTTC
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19252852 48 - 121039945 TCaa-aaaaaaaaaaaaaaaaa--aaaaaaaaaCCCCAAGGTACTCAGTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107046161 40 - 169600520 tcaa---------aaaaaataa--aaataaaTAACCCAAGGTACTCAGTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65401639 40 + 171882078 tcaa---------aaaaaataa--aaataaaTAACCCAAGGTACTCAGTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        50478 40 +   6271500 tcaa---------aaaaaataa--aaataaataaCCCAAGGTACTCAGTTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        45056 40 -   5160157 tcaa---------aaaaaataa--aaataaataaCCCAAGGTACTCAGTTC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3880028 40 +  24206276 tcaa---------aaaaattaa--aaataaaTAACCCAAGGTACTCAGTTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       379954 40 -   1458659 tcaa---------aaaaaataa--aaataaataaCCCAAGGTACTCAGTTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3826484 40 -   4111199 tcaa---------aaaaaataa--aaataaataaCCCAAGGTACTCAGTTC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49614624 51 +  54856640 TAAAaagcaaacaaacaaacaaacaaaaaaacCACCCAAGGTACTCAGTTC
i saiBol1.JH378108          I 3 C 0
s otoGar3.GL873548            9401302 25 -  19069880 ------------------------CAAAAAAT--TCTATGGTACTCAGTTC
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39854592 39 +  42888418 I
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=3774610.000000
s hg38.chr15_KI270850v1_alt    291656 657 +    430880 ACATGCAAAACCACTGGTAAACATAAATTATCTCCAAGTAATCTAGAAAGAAAATGAGCACATAAGACGTCTTCTAAAAACACACATATATTTCTTTACATGTTACATTTAACGTAAAAATCAGCTATGCAGA--AGTTACATGAACATTTTATGTTGGAAAGGTAAATGACTATTATTAATACAGAATGGTTAAGTACATTTATGTTTTTATGTACAAACGCATAAAAGGAAAAGCATCCTTAAAATAAACACCATCAATGGCTCCTCGGTGGTCACAAAACAAAATCCTCACACCTTT-GTCTTCCTTCACAATTGAGCTTTATCCACCTTTTCAGGCTTATCTCCCATTATTACCTGACACAAACTTGGGTGGGCCAGAGTTTCCACTGACCATCCCCCGACTATTCATCCAACACTATGTTCACTGCCTCCCATTC--CTGACCATTTGCCTTTTGTCTTCAACTAATTCTGGGGACGTTTTGTCCAAATAAATGATCCATATTCTTGAAGGCTGGAATCAAGTCCTATTACAAATATATTTTCTCACCCTCTCCAGAGCATAGCAACCCAGCATCTACTGGCCTCTCACAGCTCTAACCATCCACAACCCTAA-GCTGGCTTCTCATCAAACGGGTACTTTTCACCACCCAAATTCAA
s gorGor5.CYUI01015946v1       123644 655 -    378907 ACATGCAAAACCACTGGTAAACATAAATTATCTCCAAGTAATCTAGAAAGAAAATGAGCACATAAGACGTCTTCTAAAAACACACATATATTTCTTTACATGTTACATTTAACGTAAAAATCAGCTAT-CAGA--AGTTACATGAACATTTTATGTTGGAAAGGTAAATGACTATTATTAATACAGAA-GGTTAAGTACATTTATGTTTTTATGTACAAATGCATAAAAGGAAAAGCATCCTTAAAATAAACACCATCAATGGCTCCTCGGTGGTCACAAAACAAAATCCTCACACCTTT-GTCTTCcttcacaattgagctttatccaccttttcaggcttatctcccattattacctgacacaaacttgggtgggccagagtttccactgaccatcccccgaCTATTCATCCAACACTATGTTCACTGCCTCCCATTC--CTGACCATTTGCCTTTTGTCTTCAACTAATTCTGGGGACGTTTTGTCCAAATAAATGATCCATATTCTTGAAGGCTGGAATCAAGTCCTATTACAAATACATGTTCTCACCCTCTCCAGAGCATAGCAACCCAGCATCTACTGGCCTCTCACAGCTCTAACCATCCACAACCCTAA-GCTGGCTTCTCATCAAACGGGTACTTTTCACCACCCAAATTCAA
i gorGor5.CYUI01015946v1    C 0 C 0
s nomLeu3.chr6               19252900 655 - 121039945 ACATGCAAAACCACTGGTAAACATAAATTATCTCCAAGTAATCTAGAAAGAAAATGTGCACATAAGACATCTTCTAAAAACACAC--ATATTTCTTTACATGTTACATTTAACATAAAAATCAGCTATGCAGA--AGTTACATAAACATTTTATGTTGGAAAGGTAAATGACTATTATTAATACAGAATGGTTAAGTACATTTATGTATTTATGTATAAATGCATAAAAGGAAAAGCATCCTTAAAATAAACACCATCAATGGCTCCTTGGTGGTCACAAAACAAAATCCTCACATCTTT-GTCTTCCTTCACAATTGAGCTTTACCCATCTTTTCAGGCTTATCTCCCATTATTACCTGACACAAACTTGGGTGGGCCAGAGTTTCCACTGACCATCCCCCCACTATTCATCCAACACTATGTTTACTGCCTCCCATTC--CTGACCATTTGCCTTTTGTCTTCAACTAATTTGGGGGACGTTTTGTCCAACTAAATGATCCATATTCTTCAAGGCTGGAATCAAGTCCTATTACAAATATATTTTCTCACCCTCTCCAGAGCATAGCAACCCAGCATCTACTGGCCTCTCATAGCTCTAACCATCCACAACCCTAA-GCTGGCTTCTCATCAAACGGGCACTTTTCACCACCCAAATTCAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107046201 650 - 169600520 ATATGCAAACCCGCTGGTAAACACAAACTATCTCCAAGTAGTCTAGAAAGAAAATGAGCACATAAGACAACTTCTAAAAAGGCACATATATTTCTTGACATGTTACATTCAACATAAAAATCAGCTATGCAGA--AGTTACATTAACATTTTATGTCAGAAAGGTAAATGACTATTATTAATACAGCA-------GTATATTTATGTATTTATGTATAAATGCATAAAAGGAAAAGCATCCTCAAAATAAACACCATCAATGGCTCCTCGGTGGTCACAAAACAAAATCCTCACACTTTT-GTCTTCcttcacaattgagcttcatccatcttttcaggcgtatctcccatcattacctgacacaaacTTGGGTGGGCCAGAGTTTCCACTGACCATCCCCTCACTATTCATCCAACACTATGTTCACTGCCTCCCATTC--CTGATCATTTACCTTTTGTCTTCAACTAATTCTGGGGACGTTGTGTCCAACTAAATGATCCATATTCTTCAAGGCCGGAATCAAGTCCTATTACAAAGATATTCTCTCACCCTCTCCAGAGCATAGCAACCCAGCAACTACTGGCCTCTCATAGCCCTAACCATCCACAACCCGAA-GCTGGCTTCTCATCAAACGGGCACTTTTCATCACCCAAATTCAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65401679 650 + 171882078 ATATGCAAACCCGCTGGTAAACATAAACTATCTCCAAGTAGTCTAGAAAGAAAATGAGCACATAAGACAACTTCTAAAAAGGCACATATATTTCTTGACATGTTACATTCAACATAAAAATCAGCTATGCAGA--AGTTACATTAACATTTTATGTTGGAAAGGTAAATGACTATTATTAATACAGCA-------GTATAATTATGTATTTATGTATAAATGCATAAAAGGAAAAGCATCCTCAAAATAAACACCATCAATGGCTCCTCGGTGGTCACAAAACAAAATCCTCACACTTTT-GTCTTCCTTCACAATTGAGCTTCATCCATCTTTTCAGGCGTATCTCCCATCATTACCTGACACAAACTTGGGTGGGCCAGAGTTTCCACTGACCATCCCCTCACTATTCATCCAACACTATGTTCACTGCCTCCCATTC--CTGACCATTTACCTTTTGTCTTCAACTAATTCTGGGGACGTTGTGTCCAACTAAATGATCCATATTCTTCAAGGCCGGAATCAAGTCCTATTACAAAGATATTCTCTCACCCTCTCCAGAGCATAGCAACCCAGCAACTACTGGCCTCTCATAGCCCTAACCATCCACAACCCGAA-GCTGGCTTCTCATCAAACGGGCACTTTTCATCACCCAAATTCAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        50518 648 +   6271500 ATATGCAAACCTGCTGGTAAACACAAACTATCTCCAAGTAGTCTAGAAAGAAAATGAACACATAAGACAACTTCTAAAAAGGCACATATATTTCTTGACAAGTTACATTCAACATAAAAATCAGCTATGCAGA--AGTTACATGAACATTTTATGTCAGAAAGGTAAATGACTATTATTAATACAGCA-------GTATATTTATGTATTTATGTATAAATGCATAAAAGGAAAAGCATCCTCAAAATAAACACCATCAATGGCTCCTCGGTGGTCACAAAACAAAATCCTCACACTTTT-GTCTTCcttcacaattgagcttcatccatcttttcaggcttatctcccattattacctgacacaaacttgggtgggcc--agtttccactgaccatccccccactattcatccaacactatgttcactgcctcccattc--ctgaccatttgccttttgtcttcaactaattctggggacgttgtgtccaactaaatgatccatattcttcaaggccggaatcaagtcctattacaaagatattctctcaccctctccagAGCATAGCAACCCAGCAACTACTGGCCTCTCATAGCCCTAACCATCCACAACCCGAA-GCTGGCTTCTCATCAAACAGGCACTTTTCACCACCCAAATTCAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        45096 648 -   5160157 ATATGCAAACCCGCTGGTAAACATAAACTATCTCCAAGTAGTCTAGAAAGAAAATGAGCACATAAGACAACTTCTAAAAAGGCACATATATTTCTTGACATGTTACATTCAACATAAAAATCAGCTATGCAGA--AGTTACATGAACATTTTATGTTGGAAAGGTAAATGACTATTATTAATACAGCA-------GTATATTTATGTATTTATGTATAAATGCATAAAAGGAAAAGCATCCTCAAAATAAACACCATCAATGGCTCCTCGGTGGTCACAAAACAAAATCCTCACACTTTT-GTCTTCcttcacaattgagcttcatccatcttttcaggcttatctcccattattacctgacacaaacttgggtgggcc--agtttccactgaccatctccccactattcatccaacactatgttcactgcctcccattc--ctgaccatttgccttttgtcttcaactaattctggggacattttgtccaactaaatgatccatattcctcaaggccagaatcaagtcctattacaaagatattctctcaccctctccagAGCATAGCAACCCAGCAACTACTGGCCTCTCATAGCCCTAACCATCCACAACCCGAA-GCTGGCTTCTCATCAAACGGGCACTTTTCACCACCCAAATTCAA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3880068 648 +  24206276 ATATGCAAACCCGCTGGTAAACATAAACTATCTCCAAGTAGTCTAGAAAGAAAATGAGCACATAAGACAACTTCTAAAAACACACATATATTTCTAGACATGTTACATTTAACATAAAAATCAGCTATGCAGA--AGTTACATCAACATTTTATGTTGGAAAGGTAAATGACTATTATTAATATAGCA-------GTATATTTATGTATTTATGTATAAATGCATAAAAGGAAAAGCATCCTCAAAATAAACACCATCAATGGCTCCTCAGAGGTCACAAAACAAAATCCTCACACTTTT-GTCTTCCTTCACAATTGAGCTTCATCCATCTTTTCAGGCTTATCTCCCATTATTACCTGACACGAACTTGGGTGGGCC--AGTTTCCACTGACCATCCCCCCACTATTCACCCAACACTATGTTCACTGCCTCCCACTC--CTGACCATTTACCTTTTGTCTTCAACTAATTCTGGGGACATTTTGTCCAACTAAATGATCCATATTCTTCAAGGCCGGAATCAAGTCCTATTACAAATATATTCTCTCACCCTCTCCAGAGCATAGCAACCCAGCAACTACTGGCCTCTCATAGCCCTAACCATCCACAACCCGAA-GCTGGCTTCTCATCAAACGGGCACTTTTCACCACCCAAATTCAA
i chlSab2.chr29             C 0 I 5626
s manLeu1.NW_012105520v1       379994 650 -   1458659 ATGTGCAAACCCGCTGGTAAACATAAACTATCTCCAAGTAGTCTAGAAAGAAAATGAGCACATAAGACAACTTCTAAAAACACACATATATTTCTAGACATGTTACATTTAACATAAAAATCAGCTATGCAGA--AGTTACATTAACATTTTATGTTGGAAAGGTAAATGACTATTATTAATACAGCA-------GTATATTTATGTATTTATGTATAAATGCATAAAAGGAAAAGCATCCTCAAAATAAACACCATCAATGGCTCCTCGGTGGTCACAAAACAAAATCCTCACACTTTT-GTCTTCcttcacaattgagcttcatccatcttttcaggcgtatctcccatcattacctgacacaaacTTGGGTGGGCCAGAGTTTCCACTGACCATCCCCTCACTATTCATCCAACACTATGTTCACTGCCTCCCATTC--CTGACCATTTACCTTTTGTCTTCAACTAATTCTGGGGACGTTGTGTCCAACTAAATGATCCATATTCTTCAAGGCCGGTATCAAGTCCTATTACAAATATATTTTCTCACCCTCTCCAGAGCATAGCAACCCAGCAACTACTGGCCTCTCATAGCCCTAACCATCCACAACCCGAA-GCTGGCTTCTCATCAAATGGGCACTTTTCACCACCCAAATTCAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3826524 647 -   4111199 ATATGCAAACC-GCTGGTAAACATAAACTATCTCCAAGTAGTCTAGAAAGAAAATGAGCACATAAGACAACTTCTAAAAACACACATATATTTCTTGACATGTTACATTTAACATAAAAATCACCTGTGCAGA--AGTTACATGAACATTTTATGTTGGAAAGGTAAATGACTATTATTAATACAGCA-------GTATATTTATGTATTTATGTATAAATGCATAAAACGAAAAGCATCCTCAAAATAAACACCATCAATGGCTCCTCAGTGGTCACAAAACAAAATCCTCACACTTTT-GTCTTCcttcacaattgagctttatccatcttttcaggcttttctcccattattacctgacacaaacttgggtgggcc--agtttccactgaccatcccccgactactcatccaacactatgttcactgcctcccattc--ctgaccatttgccttttgtcttcaactaattctggggacattttgtccaactaaatgatccatattcttcaaggccggaatcaagtcctaTTACAAATATATTTTCTCACCCTCTCCAGAGCATAGCAACCCAGCAACTACTGGCCTCTCATAGCTCTAATCATCCACAACCCGAA-GCTGGCTTCTCATCAAACGGGCACTTTTCACCACCCAAATTCAA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49614675 643 +  54856640 ACATGCAAACCCACTGGTGAACAT-AATAATCTCCAGGTCGTCTAGAAAGAAAATGAATACATAAAACCTCT--TAAGAA--CACGTATTTTTCTTTACATGTTACGTTTAATATAAAAATCAGCTATGCAGA--AGTTACATGAACATTTTATGTTAGAAAGGTAAATGACTATTATTAATACAGCATGGTCCAATATATTTATGTATTT--------ATACATAAAAGGAAAAGCATCTTTAAAACAAACATCATCAATGACTCCTTGGTGATCACAAAACAAAATCCCCACACCTTT-GTCTTCCTTTACAACTGAGCTTTATCCATCTTTTTAGGCTTATCTCCCATTATTCCCTGACACAAATTTGGGTGGGCTAGAGTTTCCACTGACCAACCCCC-ACTATTCATCCAACACTATGTTAACTGCCTCCCATTCC-CTGACCATTTGCCTTTTGTCTTCAACTAATTCTGGGAACGTTGTGGGCAAGTAAATGATCCTTATTCTTCAAGACCTGATTCAAGTCCTATTACAAATAAATTTTCTCACCCCTTCCAGAACATAGCAACCCAACATCTACGGGCCTCTCATAGCCCT-ACCATCCACAACACTAA-GCTGGCTTCTCATCAAACAGGCAATTTTCGCCACCCAAATTCAA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39854631 655 +  42888418 ACATGCAAACCCACTGGTGAACAT-AATAATCTCCAGGTTGTCTAGAAAGAAAATGAATACATAAAATCTCTTCTAAGAA--CACGTATTTTTCTTTACATGTTACATGTAACATAAAAATCAGCTATGCAGA--AGTTACATGAACATTTTGTGTTAGAAAGGTAAATGTCTATTATTAATACAGCATGGTCCAGTACATTTATGTATTTATATATAAATACATAAAAGGAAAAGCATCTTTAAAATAAACACCATCAATGGCTCCTTGGTCATCACAATACAAAATCCCCACACCTTC-GTCTTCcttcacaactgagttttatccatctttttaggcttacctcccattattccctgacacaaaTTTGGGTGGGCCAGAGTTTCCACTGACCAACCCCC-ACTATTCATGCAACACTATGTTCACTGCCACCCATTTCACTGACCATTTGCCTTTTGTCTTCAACTAATTCTGGGGATGTTTTGTGCAAGTAAATGATCCTTATTTTTCAAGACCTGATTCAAGTCCTATTACAAATAAATTTTCTCACCCTTTCCAGAACATAGCAACCCAACATCTACAGGCCTCTCATAGTCCT-ACCATCCACAACCCTAAGGCTGGCTTCTCATCAGACAGGTACTCTTCACCACCCAAATTCAA
i aotNan1.NW_018505940v1    I 39 C 0
s otoGar3.GL873548            9401327 577 -  19069880 ACATGTAAAACTACTGGTAAACATAATTTATCTCCAGGTAGTCTAGAGAGAAAATAAGTATATATGATATCTTCTAAGAA--CATACATTTTTCTTTG-----TATATTTAACAGAAGCATCAACTACTCAGAAGAGCTGTATGAATGTTCTTTGTTGGAAAGGTAAATGACTATTATCA------CA-------ACATGCTGAAAAATTAAT-----AATACACAAAAGGAACTGTAACTTGAAAATCAACA-CATGGATGGCTCCTTAGTGGGCACAAAACAAAATCTCCACGCCTTTAGTCTTCCTTTGAAACTTAGTCTCATCCATCCTTTGAGACTCAGCCCCCATTACC-CCCAGCACAAAGTCAGGCAGGCAGGCATTTCCACCACCCACCCTCCCACCACTTG-GCAGCACCATGCTCACTGCTTCCCATCCT-CATACCATCTGCTTTCTGCCTTCAACAAATGCTAGGGACGTTTTGCCCAACCAAGTGGTCCTTACTCTTCAGGGCGTGACTTAAGTCCTACCA-----------------------CAGAGTGTGGCAACCCAACATCCTCTGGTC-----------------TCCACAAC----A---------CTCGTTAGAGAG----TTTTCACCACCCCAATGCAA
i otoGar3.GL873548          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=1462451.000000
s hg38.chr15_KI270850v1_alt    292313 262 +    430880 TTAATTCACTCTTACAATAATGAA---GAATAGTCGCCTACAGCCTACCTTTTCCAGCCTTGATTCAATCATTTATC-----------------------AATTTTATCTTCAAAGTCCCTCACTTCAGGGAGATGATATATCAGCTTTCACCCAGAGT-CCTAAAGAAAACAGCACTCTTGCC-AATGACATAGTGCCACCTAGTGGCAACATAAGGTAAATCACAGTGGCAGTAGAAGGATCTCCACACTACTTTTACAGGAATGCACTGCAGGTAAAAAATAAGAAG
s gorGor5.CYUI01015946v1       124299 257 -    378907 TTAATTCACTCTTACAATAATAAA---GAATAGTCGCCCACAGCCTACCTTTTCCAGCCTTGATTCAATCATTTATC-----------------------AATTT-ATCTTCAAAGTCC-TCACTTCAGGGAGACGATATATCAGCTTTCACC-AGAGT-CCTAAAGAAA-CAGCACTCTTGCC-AATGACATAGTGCCACCTAGTG-CAATATAAGGTAAATCACAGTGGCAGTAGGAGGATCTCCACACTACTTTTACAGGAATGCACTGCAGGTAAAAAATAAGAAG
i gorGor5.CYUI01015946v1    C 0 N 0
s nomLeu3.chr6               19253555 242 - 121039945 TTAATTCACTCTTAGAATAATAAA---CAATAGTCGCCTACCGCCTACCTTTTCCAGCCTTGATTCAATCATTTATC-----------------------AATTTTATCTTCAAAGTCCCTCACTTTAGGGAGA--------------------TGAGT-CCTAAAGAAAACAGCACTCTTGCC-AATGACACAGTGCCACCTAGTTGCAACATAAGGTAAATCACAGTGGCAGTAGGAGGATCTCCACACCACTTTTACAGAAATGAACTGCAGGTAAAAAATAAGAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107046851 261 - 169600520 CTAATTCACTCTTACCATAATAAA---GAATAGTCACCTACAGCCTACCTTTTCCAGCCTTGATTCAATCATTCATC-----------------------AATTTTATCTTTAAAGTCCCTCACTTTAGGGAGATGATATATCAGCTTTCACCCAGAGT--CTAAAGAAAACAGCCCTCTTGCC-AATGACATAGTGCCATCTAGTTGCAACAAAAGGTAAATCACAGTGGCAGTAGGAGGATCTCCACACTACTTTTACAGGAATGCACTGCAGGTAAAAAATAAGAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65402329 261 + 171882078 CTAATTCACTCTTACCATAATAAA---GAATAGTCACCTACAGCCTACCTTTTCCAGCCTTGATTCAATCATTCATC-----------------------AATTTTATCTTTAAAGTCCCTCACTTTAGGGAGATGATATATCAGCTTTCACCCAGAGT--CTAAAGAAAACAGCCCTCTTGCC-AATGACATAGTGCCATCTAGTTGCAACAAAAGGTAAATCACAGTGGCAGTAGGAGGATCTCCACACTACTTTTACAGGAATGCACTGCAGGTAAAAAATAAGAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        51166 261 +   6271500 CTAATTCACTCTTACCATAATAAA---GAATAGTCGCCTACAGCCTACCTTTTCCAGCCTTGATTCAATCATTCATC-----------------------AATTTTATCTTTAAAGTCCCTCACTTTAGGGAGATGATATATCAGCTTTCACCCAGAGT--CTAAAGAAAACAGCACTCTTGCC-AATGACATAGTGCCACCTACTTGCAACAAAAGGTAAATCACAATGGCAGTAGGAGGATCTCCACACTACTTTTACAGGAATGCACTGCAGGTAAAAAATAAGAAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        45744 261 -   5160157 CTAATTCACTCTTACCATAATAAA---GAATAGTCGCCTACAGCCTACCTTTTCCAGCCTTGACTCAATCATTCATC-----------------------AATTTTATCTTTAAAGTCCCTCACTTTAGGGAGATGATATATCAGCTTTCACCCAGAGT--CTAAAGAAAACAGCACTCTTGCC-AATGACATAGTGCCATCTAGTTGCAACATAAGGTAAATCACAATGGCAGTAGGAGGATCTCCACACTACTTTTACAGGAATGCACTGCAGGTAAAAAATAAGAAG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3886342 284 +  24206276 CTAATTCACTCTTACCATAATAAA---GAATAGTCGCCTACAGCCTACCTTTTCCAGCCttgattcaatcattcatcaattttgtcttcaatcattcattaattTTGTCTTCAAAGTCCCTCA-TTTAGGGAGATGATATATCAGCTTTCACCCAGAGT-CCTAAAGAAAACAGCACTCTTGCC-AATGACATAGTGCCATCTAGTTGCAACATAAGGTAAATCACAATGGCAGTAGGAGGATCTCCACACTACTTTTACAGGAATGCACTGCAGGTAAAAAATAAGAAG
i chlSab2.chr29             I 5626 C 0
s manLeu1.NW_012105520v1       380644 257 -   1458659 CTAATTCACTCTTACCATAATAAA---GAATAGTCGCCTACAGCCTACCTTTCCCAGCCTTGATTCAATCATTCATC-----------------------AATTTTATCTTTAAAGTCCCTCACTTTAGGGAGATGATATATCAGCTTTCACCCAGAGT--CTAAAGAAAACAGCACTCTTGCC-AATGACACAGTTCCACCTACTTGCA----AAGGTAAATCACAATGGCAGTAGGAGGATCTCCACACTACTTTTACAGGAATGCACTGCAGGTAAAAAATAAGAAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3827171 261 -   4111199 CTAATTCACTCTTACAATAATAAA---GAATAGTCACCTACAGCCTACCTTTTCCAGCCTTGATTCAATCATTCATC-----------------------AATTTTACCTTCAAAGTCCCTCACTTTAGGGAGATGATATATCAGCTTTCACCCAGAGT--CTAAAGAAAACAGCACTCTTGCC-AATGACATAGTTCCACCTACTTGCAACATAACGTAAATCACAGTGGCAGCAGGAGGATCTCCACACTACTTTTACAGGAATGCACTGCAGGTAAAAAATAAGAAG
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49615318 262 +  54856640 CTAATTCACTCTTACAATAATAAA---GAATCGTTGCCTAGAGCTTACCTTTTCCAGCCTTGATTCAATCATTCATC-----------------------AGTTTTATCTTCTAAGTCCCTCACTTTACAGAAATGATATACCAGTTTTCACTCAAAAGTCCTAAAGAAAACAGCACTCTTGCC-AAAGACATAGTGCCACCTAGTTGCAACATAAGGTAAATCACGGTGGCAGTAGGAGGATCTCCACACTACTTTTTCAGGAATGCAGTGCAGGT-AAAAACAAGGAG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39855286 259 +  42888418 CTAATTCACTCTTAC---AATAAA---GAATAGTCGCCCAGAGCTTACCTTTTCCAGCCTTGATTCAATCATTCATC-----------------------AGTTTTATCTTCTAAGTCCCTCACTTTAGAGAAATGATATACCAGCTTTCACCCAGAGTCCTAAAAAAAAACAGCACTCTTGCC-AATGACATAGTGCCACCTAGCTGCAACATAAGGTAAATCACAGTGGCAGTAGAAGGATCTCCACACTACTTTTACAGGAATGCAGTGCAGGT-AAAACTAAGAAG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9401904 239 -  19069880 GTAATTCATTCTTACAACAATAAGAATGAAGGGTCCTGTACACGTTCCCTTTTATGGCC------------CTTTTC-----------------------CATTTCATTTCATAATTCCCTCACTTTAAGGAGATGATACAACAGCTTCCACCCAGAGT-CTGGAAGAAGAGAACATTCTTGCCAAATGACAGAGTGCCACCTAGTTGCAACTTGGGGTAACTCCCAGTGGCACTAGGAGGGAA--------------ACAGAAACACACTGCAGGT-AAAAATAAGAAG
i otoGar3.GL873548          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=153470.000000
s hg38.chr15_KI270850v1_alt    292575 25 +    430880 CTACAGTACTGTTTGGCAGGACAAT
s gorGor5.CYUI01015556v1            0 24 -   1709092 CTACAGTA-TGTTTGGCAGGACAAT
i gorGor5.CYUI01015556v1    N 0 C 0
s nomLeu3.chr6               19253797 25 - 121039945 CTACAGTACTGTTTGGCAGGACAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107047112 25 - 169600520 CTACAGTACTGTTTTGCAGGACAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65402590 25 + 171882078 CTACAGTACTGTTTTGCAGGACAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        51427 25 +   6271500 CTACAGTACTGTTTTGCAGGACAAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        46005 25 -   5160157 CTACAGTACTGTTTTGCAGGACAAT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3886626 25 +  24206276 CTACAGTACTGTTTTGGAAGACAAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       380901 25 -   1458659 CTACAGTACTGTTTTGCAGGACAAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3827432 25 -   4111199 CTACAGTACTGTTTTGCAGGACAAT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49615580 25 +  54856640 CTACAGTACTGTTTTGCAGGACAAT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39855545 25 +  42888418 CTACAGTACTGTTTAGCAGGACAAT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9402143 25 -  19069880 TTACTGTACCACCTCGCAGGGCAAT
i otoGar3.GL873548          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=6006.000000
s hg38.chr15_KI270850v1_alt    292600 1 +    430880 T
s gorGor5.CYUI01015556v1           24 1 -   1709092 T
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19253822 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107047137 1 - 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65402615 1 + 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        51452 1 +   6271500 T
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        46030 1 -   5160157 T
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3886651 1 +  24206276 T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       380926 1 -   1458659 T
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3827457 1 -   4111199 T
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1     39855570 1 +  42888418 T
i aotNan1.NW_018505940v1    C 0 I 1
s otoGar3.GL873548            9402168 1 -  19069880 T
i otoGar3.GL873548          C 0 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e saiBol1.JH378108           49615605 0 +  54856640 C

a score=771298.000000
s hg38.chr15_KI270850v1_alt    292601 184 +    430880 ----TGTTTCATACGTGCATACTATCGCCCTG-ACTAAATTAACTCGCAAGTCTTACAGGTA-TTA-TTTGTTTTCAGTTCCATGCAC--AGATTAGCCATT-TAGTACTTACTAAATCAAACTCAATTTCTGAAGTGTCTTACACCAATATATTCATGCACATATGGTTAAAAT-TTTCCTTGAGGATCTATCA---------
s gorGor5.CYUI01015556v1           25 184 -   1709092 ----TGTTTCATACGTGCATACTATCGCCCTG-ACTAAATTAACTCTCAAGTCTTACAGGTAATTA-TTTGTTTTCAGTTCCA-GCATCGAGATTAGACATCGTAGTACTTACCAA-TCAAACTCAATTTTTGAAGTGTCTTACACCAATATATC--TGCACATATGGTTAAAATATTTCCTTGAGGATC-ATCA---------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19253823 184 - 121039945 ----TGTTTCATACGTGCATACTATCGCCCTG-ACTAAATTAACTCTCGAGTCTTACAGGTA-TTA-TTTGTTTTCAGTTCCATGCAC--AGATCAGCCATT-TAGTATTCACTAAATCAAACTCAATTTCTGAAGTGTCTTACACCAATATATTCATGCATATATGGTTAAAAT-TTTCCTTGAGAATCTATCA---------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107047138 184 - 169600520 ----TGCTTCATATGTGCATACTATCGCCCTG-ACTAAATTAACTCTCAAGTCTTACAGGTA-TTA-TTTGTTTTCAGTTCCATGCAC--AGATTAGCCATT-TAGTATTTACTAAATCAAACTCAATTTCTGAAGTGTCTTACATCAATGTATTCATGCATATATGGTTAAAAT-TTTCCTTGAGAATCTATCA---------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65402616 184 + 171882078 ----TGTTTCATATGTGCATACTATCGCCCTG-ACTAAATTAACTCTCAAGTCTTACAGGTA-TTA-TTTGTTTTCAGTTCCATGCAC--AGATTAGCCATT-TAGTATTTACTAAATCAAACTCAATTTCTGAAGTGTCTTACATCAATGTATTCATGCATATATGGTTAAAAT-TTTCCTTGAGAATCTATCA---------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        51453 184 +   6271500 ----TGTTTCATATGTGCATACTATCACCCTC-ACTAAATTAACTCTCAAGTCTTACAGGTA-TTA-TTTGTTTTCAGTTCCATGCAC--AGATTAGCCATT-TAGTATTTACTAAATCAAACTCAATTTCTGAAGTGTCTTACATCAATATATTCATGCATATATGGTTAAAAT-TTTCCTTGAGAATCTATCA---------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        46031 184 -   5160157 ----TGTTTCATATGTGTATACTATCGCCCTG-ACTAAATTAACTCTCAAGTCTTACAGGCA-TTA-TTTGTTTTCAGTTCCATGCAC--AGATTAGCCATT-TAGTATTTACTAAATCAAACTCAATTTCTGAAGTGTCTTACATCAATATATTCATGCATATATGGTTAAAAT-TTTCCTTGAGAATCTATCA---------
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3886652 185 +  24206276 ----TGCTTCATATGTGCATACTATCGCCCTG-ACTAAATTAACTCTCAAGTCTTACAGGTA-TTATTTTGTTTTCAGTTCCATGCAC--AGATTAGCCATT-TAGTATTTACTAAATCAAACTCAATTTCTGAAGTGTCTTACACAAATATATTCATGGATACATGGTTAAAAT-TTTCCTTGAGAATCTATCA---------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       380927 184 -   1458659 ----TGTTTCATATGTGTATACTATCACCCTC-ACTAAATTAACTCTCAAGTCTTACAGGTA-TTA-TTTGTTTTCAGTTCCATGCAC--AGATTAGCCATT-TAGTATTTACTAAATCAAACTCAATTTCTGAAGTGTCTTACATCAATATATTCATGCATATATGGTTAAAAT-TTTCCTTGAGAATCTATCA---------
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3827458 185 -   4111199 ----TGTTTCATATGCGCATACTATCGCCCTGAACTAAATTAACTCTCAAGTCTTACAGGTA-TTA-TTTGTTTTCAGTTCCATGCAC--AGATTAGCCATT-CAGTATTTACTAAATCAAACTCAATTTCTGAAGTGTCTTACATCAATATATTCATGCATATATGGTTAAAAT-TTTCCTTGAGAATCTATCA---------
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873548            9402169 190 -  19069880 TAATTTTTTCATATGTGCATCCTATTGCCCCA-ACTACACTACTTCACAAGTCTGACAGACA-TTA-TTTGTTT-------CATGCAT--ACATTAGTCATT-TAGTATTTACTAAATCAAACTTAATTTCTGAAGGGTCTTACCAAAATAAATTCCTGTGTAGATGTTTGAATT-TTTCCTTAATAACATGATAGATTTATGG
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39855571   1 +  42888418 I
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e saiBol1.JH378108           49615605   0 +  54856640 C

a score=11865.000000
s hg38.chr15_KI270850v1_alt    292785 3 +    430880 TGT
s gorGor5.CYUI01015556v1          209 3 -   1709092 TGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19254007 3 - 121039945 TGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107047322 3 - 169600520 CGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65402800 3 + 171882078 CGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        51637 3 +   6271500 CGT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        46215 3 -   5160157 CGT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3886837 3 +  24206276 CGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       381111 3 -   1458659 CGT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3827643 3 -   4111199 CGT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49615605 1 +  54856640 --T
i saiBol1.JH378108          C 0 I 2
s otoGar3.GL873548            9402359 3 -  19069880 CAT
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39855571 1 +  42888418 I
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=4281113.000000
s hg38.chr15_KI270850v1_alt    292788 746 +    430880 GAGAGTGTG-GCTTATTATAACAA-GTAAAC-------------------------AGAACAAATAAATACAAAATGAAAAGAAATCGT----ATGATTTACTCGCATATAAGGGAGCTTGTTGTGGATTAAGTTTCATGACCCAGGACACTGAAACAGAAATGG----AATAAATGAGAATAAAATTAAAAGTTGTCATCAAAAATATAGAAGCCATCTAAAGACCTAGGTGTCAAGCATAGC-TC-TATGAGTACAATCCCG--TGCCTGAGATTACCATATGCCCAGCTGTATG-CTATACACTAAGAGATTTAGGAAGGAAGCGGGGTCAGGGATTG-------------ACCCCAGACTCCATCTTTTCAAGTGGGGAAGAAAGA-TCTTCCG-ATTGAAAAATAAAGGC------------AAAAAAGGCTTC-ACCGTC-ACAGAAGTTTCAACAACCAACAGGATATTTAAAACAG-TTATCAAAGCAAAACCATTGTATGTTCACTT-ACATTTTT-ACATAGTCC-CT-CAAACTCACAAA-ATGCTGTTTACTCAGGGACTTCTTCCGGTCTTACTAGGGAGCCTGGAAAGTGACGGGAGGATTGCAAGG-GACCACT-AGAA-CCCTCTTCCTCAAT-TCCCCTTCT-CTGAGAAGGGAGGCTACAGCTTGCCTCTCTAACCACTAAAAGGCATGACCCTCCTCAAAGTTAATAGCCGGATTCCCTGA---TAGATATTTTCACTAAATGAATTCTCATAAAACTCTCACTAAGATTTAGAGAAGGCTTCCAGGGTTG-------AATTCCTGAACATTAAGAA
s gorGor5.CYUI01015556v1          212 758 -   1709092 GAGAGTGTG-GCTTATTATAACAAAGTAAAC-------------------------AGAACAAATAAATACAAAATGAAAAGAAATCGCTGTCATGATTTACTCGCATATAAGGGAGCTTGTTTGGGATTTAGTTTCATGACCCAGGACACTGAAACAGAAATGG----AATAAATGAGAATAAAATTAAAAGTTGTCATCAAAAATATATAAGCCA-CTAAAGTCCTAGGTGTCAAGCATAGCCTC-TATGAGTACAATCCCGGATGCCTGAGATTACCATATGCCCAGCTGTATGACTATA-ACTAAGAGATTTAGGAAGGAAGCGGGGTCAGGGATTG-------------ACCCCAGACTCAGTCTTTTCAAGTGGGGAAGATAGAATCTTCCGCATTGACAAATAA--GA------------CAAAAAGGCTTCTACTGTC-ACAGAAGTTTCAACAACCAACAGGATATTTAAAACAGATTATCAAAGCAAAACCATTGTATGTTCACTT-ACATTTTTTACATAGTCC-CTGCAAACTCACAAACATGCTGTTTACTCAGGACTTCCTTCCAGTCTTAC-AGGGAACCTGGAAAGTGAGGGGAGGATTGCAAGGAGACCACTTAGAAACTCTCTTCCTCA-T-TCCCCTTCTGTTGAGAAGGGAGGCTACAGCTTGCCTCTCTAACCACTAAAAGGCATGACCCTCCTCAAAGTTAATAGCTGGATTCC-TGA---TAGATATTTTCACTAAATGAATTCTCATAAAACTCTCATTAA-ATTTAGAGAAGGCTTCCAGGGTTG-------AATTCCTGAACATTAAGAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19254010 744 - 121039945 GAGAGTGTG-GCTTATTATAACAA-GTAAAC-------------------------AGAACAGATAAATACAAAATAATAAGAAATCTC----ATGATTTACTGACACATAAGGGAGCTTGTTGTGGATTAAGTTTCATGACCCAGGACACTGAAACAGAAATGG----AATAAATGAGAATAAAATTAAAAGTTGTCATCGAAAATATATAAGCTACCTAAAGTCCTAGGTGTCAAGCATAGC-TC-TATGAGTACAATCCCG--TGCTCGAGATTATGATATGCCCAGCTGTATG-CTATACACTAAGAGACTTAGGAAGGAAGCGGGGTCAGGGATTG-------------ACCCCAGACTCAATCTTTTCAAGTGGGGAAGAAAGA-TCTTCCA-ATTGAAAAATAA--AG------------ACAAAAAGCTTC-ACTGTC-ACAGAAGTTTCAACAACCAACAGGATATTTAAAACAG-TTATCCAAGCAAAACCACTGTATGTTCACTT-ACATTTTT-ACATAGTCC-CT-CAAACTCACAAA-ATGCTGTTTACTCAGGGACTTCTTACGGTCTTACTAGGGAGCCTGGAAAGTAAGGGGAGGATTGCAAGG-GACCACT-AGAA-CGCTCTTCCTCAAT-TCCCCTTCT-CTGAGCAGGGAGGCTACAGCTTGCCTCTCTAACCACTAAAAGGCACGACCCTCCTCAAAGTTAATAGCTGGATTCCCTGA---TTGTTATGTTCACTAAATGAATTCTCATAAAAATCTCATTAAGATTTAGAGAAGGCTTCCAGGGTTG-------AATTCCTGAACGTTAAGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107047325 744 - 169600520 GAGAGTGTG-ACTTATTATAACAA-GTAAAC-------------------------AGAACAGATAAATACAAAATGAAAAGAAATCTC----ATGATTTGCTCACATATAAGGGAGCTTGTTGTGGATTAAGTTTCATGACCCAAGACACTGAAACAGAAATGG----AATAAATGAGAATAAAATCAAAAGTTGTCATCAAAAATACATGAGCCACCTAAAGTCCTAGGTGTCAAGCATAGC-TC-TATGAGTACAATCCCG--TCCCCGAGATTACCATATGCCCAGCTGTATG-CCATACACTAAGAGATTCAGGAAGGAAGTGGGGTCAGGGATTG-------------ATCCCAAACTCAATCTTTTCAAGTGGGGCAGAAAGA-TCTTCCA-ATTGAAAAATAA--GG------------ACAAAAGGTTTC-ACTGTC-ACAGAAGTTTCAACAACCAAAAGGATATTTAAA--AG-TTATCAAAGGAAAACCATTGTATGTTCACTT-ACGTTTTT-ACCTAGTCC-CT-CAAACTCACAAA-ACGCTGTTTACTCAGGGACTTCTTCCAGTCTTACTAGGGAGCCTGGAAAGTGAGGGGAGGATTGCAAG--GGCCACT-AGAA-ATCTCTTCCTCAAT-TCCCCTTCT-CTAAGAAGGGAGGCTACAGCTTGCCTCTCTAACCACTAAAAGGCATAACCCTCCTCAGAGTTAATACCTGGATTCCCTGATTGTTGTTATTTTCACTAAATGAATTCTCATAAAAATCTCATTAAGATTTAGAGAAGGCTTCCAGGGTTG-------AATTCCTGAACATTAAGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65402803 744 + 171882078 GAGAGTGTG-GCTTATTATAACAA-GTAAAC-------------------------AGAACAGATAAATACAAAATGAAAAGAAATCTC----ATGATTTGCTCACATATAAGGGAGCTTGTTGTGGATTAAGTTTCATGACCCAAGACACTGAAACAGAAATGG----AATAAATGAGAATAAAATCAAAAGTTGTCATCAAAAATACATGAGCCACCTAAAGTCCTAGGTGTCAAGCATAGC-TC-TATGAGTACAATCCCG--TCCCCGAGCTCACCATATGCCCAGCTGTATG-CCATACACTAAGAGATTCAGGAAGGAAGTGGGGTCAGGGATTG-------------ATCCCAAACTCAATCTTTTCAAGTGGGGCAGAAAGA-TCTTCCA-ATTGAAAAATAA--GG------------ACAAAAGGTTTC-ACTGTC-ACAGAAGTTTCAACAACCAAAAGGATATTTAAA--AG-TTATCAAAGGAAAACCATTGTATGTTCACTT-ACGTTTTT-ACCTAGTCC-CT-CAAACTCACAAA-ACGCTGTTTACTCAGGGACTTCTTCCAGTCTTACTAGGGAGCCTGGAAAGTGAGGGGAGGATTGCAAG--GGCCACT-AGAA-ATCTCTTCCTCAAT-TCCCCTTCT-CTAAGAAGGGAGGCTACAGCTTGCCTCTCTAACCACTAAAAGGCATGACCCTCCTCAGAGTTAATACCTGGATTCCCTGATTGTTGTTATTTTCACTAAATGAATTCTCATAAAAATCTCATTAAGATTTAGAGAAGGCTTCCAGGGTTG-------AATTCCTGAACATTAAGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        51640 746 +   6271500 GAGAGTGTGAGCTTATTATAACAA-GTAAAC-------------------------AGAACAGATAAATACAAAATGAAAAGAAATCTC----ATGATTTGCTCACATATAAGGGAGACTGTTGTGGATTCAGTTTCATGACCCAAGACACTGAAACAGAAATGG----AATAAATGAGAATAAAATGAAAAGTTGTCATCAAAAATACATGAGCCACCTAAAGTCCTAGGTGTCAAGCATAGC-TC-TATGAGTACAATCCCG--TCCCCGAGCTTACCATATGCCCAGCTGTATG-CCATACACTAAGAGATTCAGGAAGGAAGTGGGGTCAGGGATTG-------------GTCCCAAACTCAATCTTTTCAAGTGGGGAAGAAAGA-TCTTCCA-ATTGAAAAATAA--GG------------ACAAAAGGTTTC-ACTGTC-ACAGAAGTTTCAACAACCAAAAGGATATTTAAA--AG-TTATCAAAGCAAAACCATTGTATGTTCACTTAATGTTTTT-ACCTAGTCC-CT-CAAACTCACAAA-ACGCTGTTTACTCAGGGACTTCTTCCAGTCTTACTAGGGAGCCTGGAAAGTGAGGGGAGGATTGTAAG--GGCCACT-AGAA-ATCTCTTCCTCAAT-TCCCCTTCT-CTAAGAAGGAAGGCTACAGCTTGCCTCTCTAACCACTAAAAGGCATGACCCTCCTCAGAGTTAATACCTGGATTCCCTGATTGTTGTTATTTTCACTAAATGAATTCTCATAAAAATCTCATTAAGATTTAGAGAAGGCTTCCAGGGTTG-------AATTCCTGAACATTAAGAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        46218 747 -   5160157 GAGAGTGTGAGCTTATTATAACAA-GTAAAC-------------------------AGAACAGATAAATACAAAATGAAAAGAAATCTC----ATGATTTGCTCACATATAAGGGAGATTGTTGTGGATTAAGTTTCATGACCCAAGACACTGAAACAGAAATGG----AATAAACGAGAATAAAATGAAAAGTTGTCGTCAAAAATACATGAGCCACCTAAAGTCCTAGGTGTCAAGCATAGC-TC-TATGAGTACAATCCCG--TCCCCGAGATTACCATATGCCCAGCTGTATG-CCATACACTAAGAGATTCAGGAAGGAAGTGGGGTCAGGGATTG-------------GTCCCAAACTCAATCTTTTCAAGTGGGCAAGAAAGA-TCTTCCA-ATTGAAAAATAA--GG------------ACAAAAGGTTTC-ACTGTCAACAGAAGTTTCAACAACCAAAAGGATATTTAAA--AG-TTATCAAAGCAAAACCATTGTATGTTCACTTAACGTTTTT-ACCTAGTCC-CT-CAAACTCACAAA-ACGCTGTTTACTCAGGGACTTCTTCCAGTCTTACTAGGGAGCCTGGAAAGTGAGGGGAGGATTGTAAG--GGCCACT-AGAA-ATCTCTTCCTCAAT-TCCCCTTCT-CTAAGAAGGGAGGCTACAGCTTGCCTCTCTAACCACTAAAAGGCATGACCCTCCTCAGAGTTAATACCTGGATTCCCTGATTGTTGTTATTTTCACTAAATGAATTCTCATAAAAATCTCATTAAGATTTAGAGAAGGCTTCCAGGGTTG-------AATTCCTGAACATTAAGAA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3886840 742 +  24206276 GAGAGTGTG-GCTTATTATAACAA-GTAAAC-------------------------AGAACAGATAAATACCAAATGAAAAGAAATCTC----ATGATTTGCTCACATATAAGGGAGATTGTTGTGGATTAAGTTTCATGACCCAAGACACTGAAACAGAAATGG----AATAAATGAGAATAAAATCAAAAGTTGTCATCAAAAATACATGAGCCACCTAAAGTCCTAGGTGTCAAGCATAGC-TC-TATGAGTACACTCCCG--TGCCTGAGATTACCATATGCCCAGCTGTATG-CCATACACTAAGAGATTCAGGAAGGAAGTGGGGTCAGGGATTG-------------ATCCCAAACTCAATCTTTTCAAGTGGGGAAGAAAGA-TCTTCCA-ATTGAAAAATAA--GG------------ACAAAAGGTTTC-ACTGTC-ACAGAAGTTTCAACAACCAACAGGATATTTAAA--AG-TTATCAAAGGAAAACCATTGTAGGTTCACTT-ACGTTTTT-ACCTAGTCC-CT-CAAACTCACAAA-ATGCTGTTTACTCAGGGACTTCTTC--GTCTTACTAGGGAGCCTGGAAAGTGAGGGGAGGATTGCAAG--GGCCACA-AGAA-CTCTCTTCCTTAAT-TCCCCTTCT-CTAAGAAGGGAGGCTACAGCTTGCCTCTCTAACCACTAAAAGGCATGACCCTCCTCAGAGTTAATAGCTGGATTCCCTGATTGTTGTTATTTTCACTAAATGAATTCTCATAAAAATCCCATTACGATTTAGAGAAGGCTTCCAGGGTTG-------ACTTCCTGAACATTAAGAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       381114 769 -   1458659 GAGAGTGTG-GCTTATTATAACAA-GTaaacagaacagataaatacaaaatgaaaaagaacagataaatacaaaatgaaaagaaatCTC----ATGATTTACTCACATATAAGGGAGCTTGTTGTGGATTAAGTTTCATGACCCAGGACACTGAAACAGAAATGG----AATAAATGAGAATAAAATCAAAAGTTGTCATCAAAAATATATAAGCCACTGAAAGTCCTAGGTGTTAAGCATAGC-TC-TATGAGTACAATCCCG--TCCCTGAGATTACCATATGCCCAGCTGTATG-CCATACACTAAGAGATTCAGGAAGGAAGTGGGGTCAGGGATTG-------------GTCCCAAACTCAATCTTTTCAAGTGGGGAAGAAAGA-TCTTCCA-ATTGAAAAATAA--GG------------ACAAAAGGTTTC-ACTGTC-ACAGAAGTTTCAACAACCAAAAGGATATTTAAA--AG-TTATCAAAGGAAAACCATTGTATGTTCACTT-ACGTTTTT-ACCTAGTCC-CT-CAAACTCACAAA-ACGCTGTTTACTCAGGGACTTCTTCCAGTCTTACTAGGGAGCCTGGAAAGTGAGGGGAGGATTGCAAG--GGCCACG-AGAA-ATCTCTTCCTCAAT-TCCCCTTCT-CTAAGAAGGGAGGTTACAGCTTGCCTCTCTAACCACTAAAAGGCATGACCCTCCTCAGAGTTAATAGCTGGATTCCCTGATTGTTGTTATTTTCACTAAATGAATTCTCATAAAAATCCCATTAAGATTTAGAGAAGGCTTCCAGGGTTG-------ACTTCCTGAACATTAAGAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3827646 742 -   4111199 GAGAGTGTGAGCTTATTATAACAA-GTAAAC-------------------------AGAACAGATAAATACAAAATGAAAAGAAATCTC----ATGATTTGCTCACATATAAGGGAGATTGTTGTGGATTAAGTTTCATGACCCAAGACACTGAAACAGAAATGG----AATAAATGAGAATAAAATCAAAAGTTGTCATCAAAAATACGTAAGTCACCTAAAGTCCTAGGCGTCAAGCATAGC-TC-TATGAGTACAATCCCG--TCCCTGAGATTACCATATGCCCAGCTGTATG-CTATACACTAAGAGATTCAGGAAGGAAGCGGGGTCAGGGATTG-------------ATCCCAGACTCAGTCTTTTCAAGTGGGCAAGAAAGA-TCTTCCA-ATTGAAAAATAA--GG------------ACAAAAGCTTTC-ACTGTC-ACAGAAGTTTCAACAACCAACAGGATATTTAAA--AG-TTATCAAAGCAAAACCATTGTACGTTCACGT-ATGTTTTT-ACCTAGTCC-CT-CAAACTCACAAA-ATGCTGTTTACTCAGGGACTTCTTCCAGTCTTACTAGGGAGCCTGGAAAGTGAGGGGAGGATTGCAAG--GGCCACT-AGAA-ATCTCTTCCTCAAC-TCCCCTTCT-CTGAGAAGGGAGGCTACAGCTTGCCTCTCTAACCACTAAAAGGCATGACCCTCCTCAGAGTTAATAGCTGGATTCCCTGA---TTGTTATTTTCACTAAATGAATTCTCATAAAAATCTCATTAAGATTTAGAGAAGGCTTACAGGCTTG-------AATTGCTGAACATTAAGAA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49615608 755 +  54856640 GAGAGTGTGAGCTTATTAGAACAA-GTAAAC-------------------------AGAACAGATAAATACAAAATTTTTTAAAATCTC----AGAATTTACTCACATATAAGGGAGCTTGTTGTGGAGTAAGTTTCATGACCCAGGACACTGAAACAGAAATGAAATAAATAAATGAGAATAAAATTAAAAGCTGTCATCAAAAATATATAAGCCACCTAAAGTCCTAGATGTCAAGCATAGC-TC---TGAGTACAATCCCA--TGCTAGATATTACTATATGCCCAGCTGTATA-CTATACACTAAGAGATTTAGGAAGGAGATGGGGTGAGGGATTG-------------ATCCCAGACTCAATCTTTTCAAGTGGGGAAGAAAGA-CTTTTGG-ATTGAAAAATAA--AGataaaatgcttcataaaatgcttc-aCTGTC-ACAGAAGTTTCAACCACCAACAGGATATTTAAAGCAG-TTATCAAAATAAAACTACTGCATGTTCACTT-ACATTTTT-ACGTAGTCC-CT-CAAACTCCCAAA-ATGCTGTTTGCTCAGGGACTTCTTCCAGTCTTACCAAGAAGCCTGGAAAGTGAAAGGAGGATTGCAAGG-GACCCCT-AGAA---CTCTTTCTTAAT-ACACCTTCT-CTGAGAAGGGAGGCTACAACTTGCCCCTTTAACCACTAAAAGTCATGACCCTCCTCAAAATTAATAGCTGGATTCCCCGA---TGGTTATTTTCACTAAACGAATCCTCATAAGAATCTCATTAAAACT--GAGAAGGCTTCCAGGGTTG-------AATTCCTCGATATTAAGAA
i saiBol1.JH378108          I 2 C 0
s aotNan1.NW_018505940v1     39855572 746 +  42888418 GAGAGTGTGAGCTTATTATAACAA-GTAAAC-------------------------AGAACAGATAAATACAAAA-TTTAAAAAATCTC----AGAATTTACTCACATATAAGGGAGCTTGTTGTGGAGTAAGTTTCATGACCCAGGACACTGAAACAGAAATGGAATAAATAAATGAGAATAAAATTAAAAGCTGTCATCAAAAATACATAAGCCACCTAAAGTCCTAGATGTCAAGCATAGC-TC---TGAGTACAATCCCA--CACTAGAGATTACTATATGGCCAGTTGTATA-CTATACACTAAGAGATTTAGGAAGGAGATGGGGTGAGGGATTG-------------ATCCCAGATTCAATCTTTTCAAGCGGGGAAGAAAGA-TTTTCGG-ATTGAAAAATAA--AG------------ATAAAATGCTTC-ACTGTC-ACAGAAGTTTCAACAACCAACAGGATATTTAAAGCAG-TTATCAAAATAAAACTACTGCATGTTCACTT-ACATTTTT-ATGTAGTCC-CT-CAAACTCTCAAA-ACGCTGTTTGCTCAGGGACTTCTTCCAGTTTTACCAAGAAGCCTGGAAAGTGAAAGGAGGATTGCAAGG-GACCCCT-AGAA-CTCTCTCTCTTAAT-ACACCTTCT-CTGAGAAGGGAGGCTACAGCTTGCCCCTCTAATCACTAAAAGTCATGACCCTCCTCAAAATTAATAGCTGGATTCCCTGA---TTGTTATTTTCACTAAATGAATTCTCATAAGAATCTCATTAAGATTTAGAGAAGGCTTCCAGGGTTG-------AATTCCTGAATATTAAGAA
i aotNan1.NW_018505940v1    I 1 C 0
s otoGar3.GL873548            9402362 745 -  19069880 CAGAGTGTGAGTTTATTACAAGAA------C-------------------------A----AGACAAGTACAAGATAAAAAGAAAGCT-----ATGATTTACTCACATATAATGGAGCTTGCTGTGGATTAAGTTTCATGACCCAGGACACTGTAACAGAAATGG----AAGAAATAAG--TGAGATTAAAAGTTGTTGCCAAAAATATAAACACCAACTACAGTCCCAAATGTCAAGCACAGC-TCTTTTGAGTACAATCCCA--TTTCTGAGATTACTGCATACTCAACTGTATA-TTGTATACTAAGAGATTTGGGGAACAAGGGAGGTCAAGGATTGCAGAATTCCCTGTATCCCAGACTCAAATCTCTCAAGTGAGG-AGAAAAC-CTTTCCA-ATTGAAAAATAA--AG------------ATAAATAGCTTC-ACTGTC-ACAGAAGTTTCAACAATAAACAGGATATTTAAAGCAT-TTACCAAAGCAAAATCATTGTATGTTCAATT-ACACTTTT-ACGTAACACGCC-AAAACTCACAAA-ATGCTGCTT-CCCAGGTACTCCCTCTAGTCTCACTAGGGAACTTGG------GGGAGGGGGCAGGAAGAGGACCACT-ACTG-CTCTCTTCCGTGCTGTCCCTCTCT-CAGGCAAGGAAGGCAACAGTTTGC--CTGTAGCAAGTCAAAGTCATCACCCTCCTCAAAATTAATAGCTGAATTTCCTGA---TGATTATTTTCACTAAATGAATTCTCACAAA--TCTTATTAAGAACTTTAGAAAAGTTCCAGGATTGTATAATACATTCTTAAACATTAAGAA
i otoGar3.GL873548          C 0 I 989
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=40222.000000
s hg38.chr15_KI270850v1_alt    293534 9 +    430880 CAGCATGTT-
s gorGor5.CYUI01015556v1          970 9 -   1709092 CAGCATGTT-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19254754 8 - 121039945 TAGCATG-T-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107048069 8 - 169600520 TAGCATG-T-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65403547 8 + 171882078 TAGCATG-T-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        52386 8 +   6271500 TAGCATG-T-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        46965 8 -   5160157 TAGCATG-T-
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3887582 8 +  24206276 TAGCATG-T-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       381883 8 -   1458659 TAGCATG-T-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3828388 8 -   4111199 TAGCATG-T-
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49616363 8 +  54856640 TAGCATG-T-
i saiBol1.JH378108          C 0 I 1
s aotNan1.NW_018505940v1     39856318 8 +  42888418 TAGCATG-T-
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9404096 9 -  19069880 TAGCATG-CA
i otoGar3.GL873548          I 989 C 0
e calJac3.chr10             114240136 61784 - 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=13924.000000
s hg38.chr15_KI270850v1_alt    293543 3 +    430880 TTT-
s gorGor5.CYUI01015556v1          979 3 -   1709092 TTT-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19254762 3 - 121039945 TCT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107048077 3 - 169600520 TCT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65403555 3 + 171882078 TCT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        52394 3 +   6271500 TCT-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        46973 3 -   5160157 TCT-
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3887590 3 +  24206276 TCT-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       381891 3 -   1458659 TCT-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3828396 3 -   4111199 TCT-
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18119788 3 + 132174527 TCT-
i calJac3.chr10             I 83844 C 0
s saiBol1.JH378108           49616372 2 +  54856640 -CT-
i saiBol1.JH378108          I 1 I 374
s aotNan1.NW_018505940v1     39856326 3 +  42888418 TCT-
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9404105 3 -  19069880 -CTT
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=6006.000000
s hg38.chr15_KI270850v1_alt    293546 1 +    430880 T
s gorGor5.CYUI01015556v1          982 1 -   1709092 T
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19254765 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107048080 1 - 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65403558 1 + 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        52397 1 +   6271500 T
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        46976 1 -   5160157 T
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3887593 1 +  24206276 T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       381894 1 -   1458659 T
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3828399 1 -   4111199 T
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18119791 1 + 132174527 T
i calJac3.chr10             C 0 C 0
s aotNan1.NW_018505940v1     39856329 1 +  42888418 T
i aotNan1.NW_018505940v1    C 0 C 0
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873548            9404108 0 -  19069880 C
e panPan2.chr15              76637185 24711 +  99763055 I
e saiBol1.JH378108           49616374 374 +  54856640 I

a score=4246409.000000
s hg38.chr15_KI270850v1_alt    293547 644 +    430880 AAAAGTTTAAC-TTGGTGATTGGACCAGGACTTCATCTAGGCTATGAA---------TG---------CTCAGAATGGTAGGTCCTTTACCAAACAGCTTGAGTTTGTGTATAAAGTGATCTCATCCT--------------------------------------------------CTTAAGAGTCAGAG----AAACAGAACCAA--GCGACT-----------------------TCACTATAATTTGATCTGAGGAAGTTTCTTACTCACAATAGGTAAATGAAGGCACATACTAACCAGCAATATAAACAACAATATCAAGTGTCATTCACACATG-----------------CAAAAAACAGACAAAATCCCAAACTCT-------GTGTTCTAACAAATCGCAAAAACCTCACTAACAATAAATTGA-----------------------------AATGACCAAATG-TTTGGACTGAAAAGCAATGCCTTGGTAGCCTAGCC--------AT-GCCTAACTCAAATAACAGAA-CCATCTCGATGTTAAAATCCT-----------CACAGATCAAGCTGTGTATGTCTCGGGTCAAGACTTCGCCAAAAAGCAGTGAGCACACACTTAAGAGGGAAAAAATCTACCTCAGCCTCCTAAATGC-AATCATCTCTACACGAGTTGCAGGCCCCAAGCTTCAACGTGTTCTGC-TGGACAAC-GCAGTAGAAAGCTGACAAGC-AGGTGGCCTTCCCACACTGACTGAACCACCTC------CATG-CCCATGTCCATTCATTTTCTTGCCCACCCCATG-------
s gorGor5.CYUI01015556v1          983 640 -   1709092 AAAAGTTTAAC-TTGGTGATTGGACCAGGACTTCATCTAGGCTATGAA---------TG---------CTCAGAATGGTAGGTCCTTTAC-AAACAGCTTGAGTTTGTGTATAAAGTGAT-TCATCCT--------------------------------------------------CTTAAGAGTCAGAG----AAACAGAACCAA--GCGACT-----------------------TCACTATAATTTGATCTGAGGAAGTTTCTTACTCA--ATAGGTAAATGAAGGCACATACTAACCAGCAATATAAACAACAATATCAAGTGTCATTCACACATG-----------------CAAAAAACAGACAAAATCC-AAACTCT-------GTGTTCTAACAAATCGCAAAAACCTCACTAACAATAAATGGA-----------------------------AATGACCAAATG-TTTGGACTGAAAAGCAATGCCT-GGTAGCCTAGCC--------AT-GCCTAACTCAAATAACAGAAACCATCTCGACGTTAAAATCCT-----------CACAGATCAAGCTGTGTATGTCTCGGGTCAAGACTTCGCCAAAAAGCAGTGAGCACACACTTAAGAGGGAAAAAATCTACCTCAGCCTCCTAAATGC-AATCATCTCTACACGAGTTGCAGGCCCCAAGCTTCAACGTGTTCTGCCTGGACAGC-GCAGTAGAAAGCTGACAAGCCAGGTGGCCT-CCCACCCTGACTGAACCACCTC------CATGGCCCATGTCCATTCATTTTCTTGTCCACCC-ATG-------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19254766 644 - 121039945 AAAAGTTTCAC-TTGGTGATTGGACCAGGACCTCATCTAGGCTCTAAA---------CG---------CTCAGAATGGTAGGTCCTTTACCAAACACCCTGAGTTTGAGTATAAAGTGATCTCATGCT--------------------------------------------------CTTAAGAGTCAGAG----AAACAGAACCAA--GTGACT-----------------------TCACTATAATTTAATCTGAGGAAGTTTCTTACTCACAATAGGTAAATGAAGGCACATACTAACCAGCAATATCAACAACAGTATAAAGTGTCATTCATATACG-----------------CAAAAAACAGACAAAATCCCAAACTCT-------GTGTTCTAACAAATCACAAAAGCCTCACTAACAATACATTGA-----------------------------AATGACCAAATG-TTTGGACTGAAAAGTAATGCCTTGGTAGCCCAGCC--------AT-GCCTAACTCAAATAACAGAA-CCATCTCGATGTTAAAATCCT-----------CACAGATCAAGCTGTGTATGTCTCGGATCAAGACTTCACCAAAAAGCAGTGAGCACACACTTAAGAGGGAAAAAATCTACATCAGCCTCCTAAATGC-AATCATCTCCACACCAGTTGCAGGTCCCAAGCTTCAGTGTGTTCTGC-TGGACAAC-GTAGTAGAAAGCTGACAAGC-AGGTGGCTTTCCCACACTGACTGAACCACCTC------CATG-CCCATGCCCATTCATTCTCTGGTCCACCCCATG-------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107048081 678 - 169600520 AAAAGTTGAAC-TTGGAGATTGGGCCAGGACTTCATCTAGGCTATAAA---------TG---------CTCACAATGGTAGGTCCTTTACCAAACATCCTGAATTAGAGTATAAAGTGATCTCATCCT--------------------------------------------------CTTAAGAGTCAGAG----AAACAGAACCAA--GTGACTGTTTCTATAATCACTTGGTTCTGTTTCTATAATTTGATCTGAGGAAGTTTCTTACTCACAATAGGTAAATGAAGACACATACTAACCAGCAATAAAAACGACAGTATAAAGTGTCATTCATACATG-----------------CAAAAAACAGACAAAATCCCAAACTCT-------GTGTTCTAACAAATCACAAAAGCCTCATTAACAATAAATTGA-----------------------------AATGACCAAATG-TTTGGACTGAAAAGCAATGCCTTGGTAGCCTAGCT--------AT-GCCTAACTCAAATAACAGAA-CCCTCTCGATATTAAAATCCTCACAGATCTGCCACAGATCAAGCTGTGTATGTCTCAGATCAAGACTTTGCCAAAAAGCAGTTAACACACGCTTAAGAGGGAAAAAATCTACATCAGCCTCCTAAATGC-AATCACCTCCACACCAGTTGCAGGCCCCAAGCTTCAATGTGTTCTGC-TGGACAAC-GCAGTAGAAAGCTGACAAGC-AGGTGGCTTTCCCACACTGACTGAACCACCTC------CGGG-CCCATGCCCATTCATTCTCTGGTCCACCCCATG-------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65403559 678 + 171882078 AAAAGTTGAAC-TTGGAGATTGGGCCAGGACTTCATCTAGGCTATAAA---------TG---------CTCACAATGGTAGGTCCTTTACCAAACATCCTGAATTAGAGTATAAAGTGATCTCATCCT--------------------------------------------------CTTAAGAGTCAGAG----AAACAGAACCAG--GTGACTGTTTCTATAATCACTTGGTTCTGTTTCTATAATTTGATCTGAGGAAGTTTCTTACTCACAATAGGTAAATGAAGACACATACTAACCAGCAATAAAAACGACAGTATAAAGTGTCATTCATACATG-----------------CAAAAAACAGACAAAATCCCAAACTCT-------GTGTTCTAACAAATCACAAAAGCCTCATTAACAATAAATTGA-----------------------------AATGACCAAATG-TTTGGACTGAAAAGCAATGCCTTGGTAGCCTAGCT--------AT-GCCTAACTCAAATAACAGAA-CCCTCTCGATATTAAAATCCTCACAGATCTGCCACAGATCAAGCTGTGTATGTCTCAGATCAAGACTTTGCCAAAAAGCAGTTAACACACACTTAAGAGGGAAAAAATCTACATCAGCCTCCTAAATGC-AATCACCTCCACACCAGTTGCAGGTCCCAAGCTTCAATGTGTTCTGC-TGGACAAC-GCAGTAGAAAGCTGACAAGC-AGGTGGCTTTCCCACACTGACTGAACCACCTC------CGGG-CCCATGCCCATTCATTCTCTGGTCCACCCCATG-------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        52398 680 +   6271500 AAAAGTTGAAC-TTGGAGATTGGGCCAGGACTTCATCTAGGCTATAAA---------TG---------CTCACAATGGTAGGTCCTTTACCAAACACCCTGAATTACAGTATAAAGTGATCCCATCCT--------------------------------------------------CTTAAGAGTCAGAG----AAACAGAACCAAGTGTGACTGTTTCTATAGTCACTTGGTTCTGTTTCTATAATTTGATCTGAGGAAGCTTCTTACTCACAATAGGTAAATGAAGGCACAAACTAACCAGCAATATAAGCGACAGTATAAAGTGTCATTCATACATG-----------------CAAAAAACAGACAAAATCCCAAACTCT-------GTGTTCTAACAAATCACAAAAGCCTCATTAACAATAAATTGA-----------------------------AATGACCAAATG-TTTGGACTGAAAAGCAATGCCTTGGTAGCCTAGCT--------AT-GCCTAACTCAAATAACAGAA-CCCTCTCGATATTAAAATCCTCACAGATCTGCCACAGACCAAGCTGTGTATGTCTCAGATCAAGACTTTGCCAAAAAGCAGTTAACACACACTTAAGAGGGAAAAAATCTACATCAGCCTCCTAAATGC-AATCATCTCCACACCAGTTGCAGGTCCCAAGCttcaatgtgttctgc-tggacaac-gcagtagaaagctgacaagc-aggTGGCTTTCCCACACTGACTGAACCACCTC------CGGG-CCCATGCCCATTCATTCTCTGGTCCACCCCATG-------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        46977 678 -   5160157 AAAAGTTGAAC-TTGGAGATTGGGCCAGGACTTCATCTAGGCTATAAA---------TG---------CTCACAATGGTAGGTCCTTTACCAAACATCCTGAATTAGAGTATAAAGTGATCTCATCCT--------------------------------------------------CTTAAGAGTCAGAG----AAACAGAACCAA--GTGACTGTTTCTATAGTCACTTGGTTCTGTTTCTATAATTTGATCTGAGGAAGTTTCTTACTCACAATAGGTAAATGAAGACACATACTAACCAGCAATAAAAGCGACAGTATAAAGTGTCATTCATACATG-----------------CAAAAAACAGACAAAATCCCAAACTCT-------GTGTTCTAACAAATCACAAAAGCCTCACTAACAATAAACTGA-----------------------------TATGACCAAATG-TTTGGACTGAAAAGCAATGCCTTGGTAGCCTAGTC--------AT-GCCCAACTCAAATAACAGAA-CCCTCTCGATATTAAAATCCTCACAGATCTGCCACAGATCAAGCTGTGTATGTCTCAGATCAAGACTTTGCCAAAAAGCAGTTAACACACACTTAAGAGGGAAAAAATCTACATCAGCCTCCTAAATGC-AATCATCTCCACACCAGTTGCAGGTCCCAAGCttcaatgtgttctgc-tggacaac-gcagtagaaagctgacaagg-aggTGGCTTTCCCACACTGACTGAACCACCTC------CGGG-CCCATGCCCATTCATTCTCTGGTCCACCCCATG-------
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3887594 680 +  24206276 AAAAGTTGAAC-TTGGAGATTGGGCCAGGACTTCATCTAGGCTATAAA---------TG---------CTCACAATGGTAGGTCCTTCACCAAACACCCTGAATTAGAGTATAAAGTGATCTCATCCT--------------------------------------------------CTTAAGAGTCAGAG----AAACAGAACCAAGTGTGACTGTTTCTATAGTCACTTGGTTCTGTTTCTATAATTTGATCTAAGGAAGTTTCTTACTCACAATAGGTAAATGAAGGCACATACTAACCAGCAATATAAGGGACAGTATAAAGTGTCATTCATACATG-----------------CAAAAAACAGACAAAATCCCAAACTCT-------GTGTTCTAACAAATCACAAAAGCCTCACTAACAACAAATTGA-----------------------------AATGACCAAATG-TTTGGACTGAAAAGCAATGCCTTGGTAGCCTAGCT--------AT-GCCTAACTCAAATAACAGAA-CCCTCTCGATATTAAAATCCTCACAGACCTGCCACAGATCAAGCTGTGTATGTCTCAGATCAAGACTTTGCCAAAAAGCAGTTAACACACACTTAAGAGGGAAAAAATCTACATCAGCCTCCTAAATGC-AATCATCTCCACACCAGTTGCAGGTCCCAAGCTTCAATGTGTTCTGC-TGGACAAC-GCAGTAGAAAGCTGACAAGC-AGGTGGCTTTCCCACACTGACTGAACCACCTC------CATG-CTCATGCCCATTCATTCTCTGGTCCACCCCATG-------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       381895 680 -   1458659 AAAAGTTGAAC-TTGGAGATTGGGCCAGGACTTCATCTAGGCTATAAA---------TG---------CTCACAATGGTAGGTCCTTTACCAAACACCCTGAATTAGAGTATAAAGTGATCTCATCCT--------------------------------------------------CTTAAGAGTCAGAG----AAACAGAACCAAGTGTGACTGTTTCTATAGTCACTTGGTTCTGCTTCTATAATTTGATCTGAGGAAGTTTCTTACTCACAATAGGTAAATGAAGACATGTACTAACCAGCAATAAAAGCGACAGTATAAAGTGTCATTCATACATG-----------------CAAAAAACAGACAAAATCCCAAACTCC-------GTGTTCTAACAAGTCACAAAAGCCTCACTAACAATAAATTGA-----------------------------AATGACCAAATG-TTTGGACTGAAAAGCAATGCCTTGGTAGCCTAGCT--------AT-GCCTAACTCAAATAACAGAA-CCCTCTCGATATTAAAATCCTCACAGATCTGCCACAGATCAAGCTGTGTATGTCTCAGATCAAGACTTTGCCAAAAAGCAGTTAACACACGCTTAAGAGGGAAAAAATCTACATCAGCCTCCTAAATGC-AATCACCTCCACACCAGTTGCAGGTCCGAAGCttcaatgtgttctgc-tggacaac-gcagtagaaagctgacaagc-aggTGGCTTTCCCACACTGACTGAACCACCTC------CATG-CTCATGCCCATTCATTCTCTGGTCCACCCCATG-------
i manLeu1.NW_012105520v1    C 0 M 670
s colAng1.NW_012116021v1      3828400 728 -   4111199 AAAAGTTGAAC-TTGGAGATTGGGCCAGGACTTCATTTAGGCTATAAA---------TG---------CTCATAATGGTAGGTCCTTTACCAAACACCCTGAATTAGAGTATAAAGTGATCTCATACTAAAGAGTCAGAGAAACATATTAAAGAAACATATTAAACATAAGAAACATATTAAAGAGTCAGAG----AAACAGAACCAA--GTGACTGTTTCTATAGTCACTTGGTTCTGTTTCTATAATTTGATCTGAGGAAGTTTCTTACTCACAATAGGTAAATGAAGGCACATACTAACCAGCAATATAAGCAGCAGTATAAAGTGTCATTCATACATG-----------------CAAAAAACAGACAAAATCCCAAACTCT-------GTGTTTTAACAAATCACAAAAGCCTCACTAACAATAAATTGA-----------------------------AATGACCAAATG-TTTGGACTGAAAAGCAATGCCTTGGTAGCCTAGTC--------AT-GCCTAACTCAAATAACAGAA-CCCTCTCGATATTAAAATCCTCACAGATCTGCCACAGATCAAGCTGTGTATGTCTCAGATCAAGACTTTGCCAAAAAGCAGTTAACATACACTTAAGAGGGAAAAAATCTACATCAGCCTCCTAAATGC-AATCATCTCCACACCAGTTGCAGGTCCCAAGCTTCAGTGTGTTCTGC-TGAACAAC-GCAGTAGAAAGCTGACAAGC-AGGTGGCTTTCCCACGCTGACTGAACCACCTC------CGGG-CCCATGCCCATTCATTCTCCGGTCCACCCCATG-------
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18119792 663 + 132174527 AAAAGTTTAAC-TTGGTGATTTGA-CAGGACTTCAACTAGGCTATAAA---------TG---------CTCTGAATGGTAGGTCC-TTACCAACTACCCTGAATTTGAGTATAAAGTGATTTCGTCCT--------------------------------------------------CTTAAGAGTCAGAG----AAACAGACCAAA--GTGACT-----------------------TCACTATAATTTGATCTGAAGAAGTTTCTTATTCACAATAGGTAAATGAAAGCATATACTGACCAGCAATACAAACAT---------GTATCATTCAGACATGGaaaaaaaaaaaaaaaaaaaaaaaCAGACAAAATCCCAAACTGT-------GTGTTCTAACAAATCACAAAAGCCTCACTAACAATAAATTGA-----------------------------AATGACCAAATG-TTTGGAATGAAAAGCAATGCCTTGGTAGC-----T--------AT-GCATAACTCAAATAACAGAA-CTCTCTTATTATTAAAATCCTCACAGGTCTGCCACAGATCAAGCTGTGTATGTCTCAGATCAAGACTTGGCCAAAGAGCAGTTAACACACACTTAGAGGGAAAATAATCTACATCAGCCTCCTAAATGCAAATAATCTCCACACCAGTCGCAAGCCCCAACCTAGAATGTGTTCTGC-TGAACAAC-ACAGTAGGAAGGTGACACAC-AGGTGGCTTTCTTACACTGACTGAACCAACTCCATCCTCGTG-TCCATGCCCATTCGTTTTCTGGTTCACTCGATA-------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49616748 662 +  54856640 AAAAGTTTAAC-TTGGTGATTTGACCAGGACTTCATCTAGTCTATAAA---------TG---------CTCTGAATGGTACGTCCTTTACCAAGTACCTTGAATTTGAGTATAAAGTGATTTCATCCT--------------------------------------------------CTTAAGAGTCAGAG----AAACAGACCAAA--GTGACT-----------------------TCACTATAATTTGATCTGAGGAAGTTTCTTTTTCACAAGAGGTAAATGAAGGCACATACTAACCAGCAATACAAACAG---TATAAAATGTTATTAATACACG---------CAAAAAAAAAAAAAGCAGACAAAATCCCAAACTTT-------GTGTTCTAACAAATCACAAAAGCCTCACTAACAATAAATTGA-----------------------------AATTACCAAATG-TTTGGAATGAAAAGCAATGCCTTGGTAGC-----T--------GT-ATATAACTCAAATAACAGAA-TGCTCTTTATACTAAAATCCTCACAGGTCTGCCACAGATCAAGCTGTTTATGTCTCGGATCAAGACTTGGCCAAAAAGCAGTTAACACACACTTAGAGGGAAAATAATCTACATCAGCCTCCTAAATGCAAATAATCTCCACACAAGTTGCAAGCCCACAAGTTCAATGTGTTCTGC-TGGACAAT-GCAGTAGGAAGGTGACACAC-AGGTGGCTTTCTCACACTGACTGAACCAACTCCATCCTCATG-TCCATGCCCATTCATTTTCTGGTTCACTCCATA-------
i saiBol1.JH378108          I 374 C 0
s aotNan1.NW_018505940v1     39856330 667 +  42888418 AAAAGTTTAACTTTGGTGATTTGACCAGGACTTCATCTAGGCTATAAA---------TG---------CTCCGAATGGTAGGTCCTTTACCAAGTACCCTGAATTTGAGTATAAAGTTATTTCATCCT--------------------------------------------------CTTAAGAGTCAGAG----AAACAGACCAAA--GTGACT-----------------------TCATTATAATTTGATCTGAGGAAGTTTCTTATTCACAATAGGCAAATGAAGACACATACTGACCAGCAATACAAACAACAGTATAAAATGTCATTCATACATG--------aaaaaaaaaaaaaaaacagacaaaaTCCCAAACTTT-------GTGTTCCAACAAATCACAAAAGCCTCACTAACAATAAATTGA-----------------------------AATGACCAAATG-TTTGGAATGAAAAGCAATGCCTTGGTAGC-----T--------GT-GCATAGCTCAAATAACAGAA-CCCTCTTTATATTGAAATCCTCACAGGTCTGCCACAGATCAAGCTGTGTATGTCTCAGATCAAGACTTGGCCAAAAAGCAGTTCACACACACTTAGAGGGAAAATAATCTACATGAGCCCCCTAAATGCAAATAATCTCCACACCAGTTGTAAGCCCCAACCTTCAATGTGTTCTGC-TGGACAAT-GCAGTAGGAAGGTGACACAC-AGGTGGCTTTCTCACACTGACTGAACCAACTCCATCCTCATG-TCCATGCCCATTCATTTTCTGGTTCACTCCATA-------
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9404108 684 -  19069880 AGAAGTTTAAC-TTGATGATTTGATGAGGCCTTCATGGAGGCTAAAAAACTATGGTTTGGAATCAGACTTCACAATGGTGGGTCCTTAGCCAAACATTCTGAATTTGAGTATTAGGTGATTTCAACCT--------------------------------------------------CATAAGAGTCAGAGAAGAAAACAAACCCAA--GTAATT-----------------------TAATTATAATTTAATCT-AAGAGATTTCTTATTCATAATAGGTAAATTAAGGTGCCAACCAGCCAGCAATATAAACAACACTAT---------TTCATACATG-----------------AAAAAAAAGGGGGGGATAC---ACTGTACTGCACGCATTCTGTCAGATCACAGAAACCTCACTAACAATGAACTGAAATCCAAACAACACAAATTGGAAGTTATTAATGACCTAATGTTTTAGACTAAAAAGCAATACCTTAGTGGCCAGGCCTAACTTAAATAACCTAACTTAAATAACAGAA-CCTTCTCAATATTAAAATATTCACAG-------------------------------GATCAAGATTCAGAAAAAAAGCAGCTAGCTCACA--GAGGGGAAAAAAAATCTATACTAGCCTACTTAAACC-CATCATCTCCA-ATGAACTCCAGGCCCCAGTTTTGGATATGTTCCAC-CAGACAAAGGCAATAGGAAGGTGACAGGG-AGGTAGCATCTCCATGTTGACTAATCCACCTC------CATG-CCCATCCCTATTCATTCTCTGGCCCACCCTACACAGTGTA
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=156144.000000
s hg38.chr15_KI270850v1_alt    294191 36 +    430880 TGCTATAACAGACCTCCT-----------------GGCTCAGGGCACTCTTTC
s gorGor5.CYUI01015556v1         1623 36 -   1709092 TGCTATAACAGACCTCCT-----------------GGCTCAGGGCACTCTTTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19255410 36 - 121039945 CGCTACAACAGACCTCCT-----------------GGCTCAGGGTACTCTTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107048759 36 - 169600520 CTTTATAACAGACCTCCT-----------------GGCTCAGGGTACTCTTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65404237 36 + 171882078 CTTTATAACAGACCTCGT-----------------GGCTCAGGGTACTCTTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        53078 35 +   6271500 CGCTATAGCAGACCTCCT------------------GCTCAGGGTACTCTTTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        47655 35 -   5160157 TGCTATAGCAGACCTCCT------------------GCTCAGGGTACTCTTTC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3888274 35 +  24206276 CGCTGTAACAGACCTCCT------------------GCTCAGGGTACTCTTTC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3829128 36 -   4111199 CGCTATAGCAGACCTCCT-----------------GGCTCAGGGTACTCTTTC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18120455 36 + 132174527 CCCCATAACAGACCTCCT-----------------GGCTAGGAGTACTCTTTC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49617410 33 +  54856640 CCCAGTAACAGA---CCT-----------------GGCTAGGGGTACTCTTTC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39856997 36 +  42888418 CCCCATAACAGACCTCCT-----------------GGCTAGGGGTACTCCTTC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9404792 53 -  19069880 GACTCTACcaggggtcctcaaactttttaaacagggggccagttcactgtccc
i otoGar3.GL873548          C 0 I 155
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       382575 670 -   1458659 M

a score=2363510.000000
s hg38.chr15_KI270850v1_alt    294227 422 +    430880 CTTCCTGACTGCCTTCACTTAATGACTTTGTACTTTT-AGGTGCAAAAATTATCTGCAGAAATCCACACTGAAAACC-AAGCTTGAGAAAGGCAGCAAT----AACCAACATTTTTACAAGAAGAAC--A-AGGTCAATATCAAGCCCATCAGATTCAAATAGCAAGCATGGATGAAAATGAAAGATTGAAAGGCT-TGAGTGCC-TTCTTAATGTATTAAATATCCATTTAATTT-ACAATTAAGCTCACTGTGCTCACTGGCCTTTTAATCAGCTTTCCAGGTCCTGCTCAGACTTGCCTAGGACATGGGAATGAAAGAACCTATACATTTATGGACCAATCTACCTTAACTAACTTGTCAAGTGTTCCTGCAT--CAAGCAGAA-GAAACATCAGTGAAACTGATACAGGAATTAACCCCTTGTTAATCCATAA
s gorGor5.CYUI01015556v1         1659 419 -   1709092 CTTCCTGACTGCCTTCACTTAATGACTTTGTACTTTTTAGGTGCAAAA-TTATCTGCAGAAATCCACACTGAAAACC-AAGCTTGAGAAAGGCAGCAAT----AACCAACATTTTTACAAGAAGAAC--A-AGGTCAATTTCAAGCCCATCAGATTCAAATAGCAAGCATGGATGAAAATGAAAGATTGAAAGGCT-TGAGTGC--TTCT-AATGTATTAAATATCCATTTAATTT-ACAATTAAGCTCACTGTGCTCACTGGCCTTTTAATCAGCTTTCCAGGTC-TGCTCAGACTTGCCTAGGACATGGGAATGAAAGAACCTATAAATTTATG-ACCAATCTACCTTAACTAACTTGTCAAGTGTTCCTGCAT--CAAGCAGAAAGAAACATCAGTGAAACTGATACAGGAATTAACCCCTTGTTAATCCATAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19255446 422 - 121039945 CTTCCTGACTGCCGTCACTTAATGACTTTGTACTTTT-AGGTGCAAATATTATCTGCAGAAATCCACACTGAAAACC-AAACTTGGGAAAGACAGCAAT----AACCAACGTTTTTACAAGAAGAAC--A-AGATCAATTTCAAGCCCATCAGATTCAAATAGCAAGCATGGATGAAAATGAAAGATTGAAAGGCC-TGAGTGCC-TTCTCAATGTATTACATATCTATTTAATTT-ACAATTAAGCTCACTGTGTTCACTGGCCTTTTAATCAGCTTTCCAGGTCCTGCTCAGACTTGCCTAGGACATGGGAATGAAAGCACCTATAAATTTATGGACCAGTCTACCTTAACTAACTTGTCAAGTGTTCCTGCAT--CAAGTAGAA-GAAACATCAGTGAAACTGATACAGGAATTAACACCTTGTTAATCCATAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107048795 424 - 169600520 CTTCCTGACTGCCTTCACTTAATGACTTTGTAACTTT-AGGTGTAAAAATTATCTGCAGAAATCCACACTGAAAACC-AAGCTTGCGAAAGGCAGCAATAACCAACCAACATTTTTACAAGAAGAAC--A---GTCAATTTCAAGCCCATCAGATTCAAATAGCAAGCATGGATGAAAATGAAAGATTGAAAGGTT-TGAGGACC-TTATCAATGTATTAAATATCCATTTAATTT-ACAATTAAGCTCACTGTGCTCACTGGCCTTTTAATCAGCTTTCCAGGTCCTGCTCAGACTTGCCTGGGACATGGGAATGAAAGAACCCATAAATGTATGGACCAATCTACCTTAACTAACTTGTCAAGTGTTCCTGCAT--CAAGCAGAA-GAAATATCAGTGAAACTGATACAGGAATTAACACCTTGTTAATCCATAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65404273 424 + 171882078 CTTCCTGACTGCCTTCACTTAATGACTTTGTAACTTT-AGGTGTAAAAATTATCTGCAGAAATCCACACTGAAAACC-AAGCTTGCGAAAGGCAGCAATAACCAACCAACATTTTTACAAGAAGAAC--A---GTCAATTTCAAGCCCATCAGATTCAAATAGCAAGCATGGATGAAAATGAAAGATTGAAAGGTT-TGAGGACC-TTATCAATGTATTAAATATCCATTTAATTT-ACAATTAAGCTCACTGTGCTCACTGGCCTTTTAATCAGCTTTCCAGGTCCTGCTCAGACTTGCCTGGGACATGGGAATGAAAGAACCCATAAATGTATGGACCAATCTACCTTAACTAACTTGTCAAGTGTTCCTGCAT--CAAGCAGAA-GAAATATCAGTGAAACTGATACAGGAATTAACACCTTGTTAATCCATAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        53113 424 +   6271500 CTTCCTTACTGCCTTCACTTAATGACTTTGTACTTTT-TGCTGCAAAAATTATCTGCAGAAATCCACACTGAAAAGC-AAGCTTGAGAAAGGCAGCAATAACCAACCAACATTTTTACAAGAAGAAC--A---GTCAATTTCAAGCCCATCAGATTCAAATAGCAAGCATGGATGAAAATGAAAGATTGAAAGGTT-TGAGTACC-TTCTCGATGTATTAAATATCCATTTAATTT-ACAATTAAGCTCACTGTGCTCACTGGCCTTTTAATCAGCTTTCCAGGTCCTGCTCAGACTTGCGTAGGACATGGAAATGAAAGAACCCATAAATTTATGGACCAATCTACCTTAACTAACTTGTCAAGTGTTCCTGCAT--CAAGCAGAA-GAAATATCAGTGAAACTGATACAGGAATTAACACCTTGTTAATCCATAA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        47690 424 -   5160157 CTTCCTTACTGCCTTCACTTAGTGACTTTGTACTTTT-TGCTGCAAAAATTATCTGCAGAAATCCACACTGAAAACC-AAGCTTGAGAAAGGCAGCAATAACCAACCAACATTTTTACAAGAAGAAC--A---GTCAATTTCAAGCCCATCAGATTCAAATAGCAAGCATGGATGAAAATGAAAGATTGAAAGGTT-TGAGTACC-TTCTCGATGTATTAAATATCCATTTAATTT-ACAATTAAGCTCACTGTGCTCACTGGCCTTTTAATCAGCTTTCCAGGTCCTGCTCAGACTTGCGTAGGACATGGAAATGAAAGAACCCATAAATTTATGGACCAATCTACCTTAACTAACTTGTCAAGTGTTCCTGCAT--CAAGCAGAA-GAAATATCAGTGAAACTGATACAGGAATTAACACCTTGTTAATCCATAA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3888309 424 +  24206276 CTTCCTTACTGCCTTCACTTAATGACTTTGTACTTTT-TGCTGCAAAAATTATCTGCAGAAATCCACACTGAAAACC-AAGCTTGAAAAAGGCAGCAATAACCAACCAACATTTTTACAAGAAGAAC--A---GTCAATTTCAAGCCCATCAGATTCAAACAGTAAGCATGGATGAAAATGAAAGATTGAAAGGTT-TGAGGACC-TTATCAATGTATTAAATATCCATTTAATTT-ACAATTAAGCTCACTGTGCTCACTGGCCTTTTAATCAGCTTTCCAGGTCCTGCTCAGACTTGCCTAGGACATGGAAATGAAAGAACCCATAAATGTATGGACCAATCTACCTTAACTAACTAGTCAAGTGTTCCTGCAT--CAAGCAGAA-GAAATATCAGTGAAACTGATACAGGAATTAACACCTTGTTAATCCATAA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3829164 423 -   4111199 CTTCCTGACTGCTTTCACTTAATGACTTTGTACTTTT-TGGTGCAAAAATTATCTGCAGAAATCCACACTGAAAACC-AAGCTTGAGAAAGGCAGCAATAACCAACCAACATTTTTACAAGAAGAAC--A---GTCCATTTCAAGCCCATCAGATTCAAATAGCAAGCATGGATGAAAATGAAAGATTGAAAGGTT-TGAGGACT-TTCTCAATGTATTAAATATCCATGTAATTT-ACAATTAAGCTCACTGTG-TCACTGGCCTTTTAATCAGCTTTCCAGGTCCTGCTCAGACTTGCGTAGGACATGGAAATGAAAGAACCCATAAATTTATGGACCAATCTACCTTAACTAACTTGTCAAGTGTTCCTGCAT--CAAGCAGAA-GAAATATCAGTGAAACTGATACAGGAATTAACACCTTGTTAAGCCATAA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18120491 369 + 132174527 CTTTCTAACTGCCTTCACTTAATGACTCTGTACTTTA-AGGTGCAAAAATTATCTGCAGGAATCCACACTGAAACCC-AAGCTTGAGAAACGTAGCAATAACAAA-AAACATTTTTAGAAAAAGAAC--A---GTCAATTTCAAGCCCATCAGATTCAAACAGCAAGCATGAATGAAAAAGAAAGATCGAAAAGCT-TGAGTACCTTTCTCAATGTATTAAATATCCATTTAATTT-AAAATTAA---------GCTCACTGGCCTTTGAATGAGCTTTCCAGATCCTGCTCAGACTTGCCTATGACATAGGAATGAAAGAACCTATGAATTTATGAACTAATCTACCTTAACTAACTTGTCAAGTGTTCCTGCAT--CAAGCAGAA-G----------------------------------------------AA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49617443 380 +  54856640 CTTTCTAACTGCCTTCACTTAATGACTCTGTACTTTT-AGGTGCAAAAATCATTTGCAGAAATCCACACTGAAAACC-AAGCTTGCGAAAGGTAGCAATAACAAACCAACATTTTTAGAAGAAGAACAAA---GTCAATTTCAAGCCCATCAGATTCAAACAGCAAACATGAATGAAAAAGAAAGATTGAAAAGCT-TAAGTACC-TTCTCAATGTATTAAATATCCGTTTAATTT-AAAATTAACCTCACTGTGCTCACTGGCCTTTGAATGAGCTTTCCAGATCCTGCTCAGACTTGCCTATGACATAGGAATGAAAGAACCCATAAATTTATGAACTAATCTACCTTAACTAACTTGTCAAGTGTTCCTGCAT--CAAGCAGAA-G----------------------------------------------AA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39857033 378 +  42888418 CTTTCTAACTGCCTTCACTTAATGACTCTGTGCTTTT-AGGTGCAAAAATTATCTGCAGAAATCCACACTGAAAACC-AAGCTTGAGAAAGGTAGCAATAACAAACCAACATTTTTAGAAGAACAA---A---GTCAATTTCAAGCCCATCAGATTCAAACAGCAAGCATGAATGAAAAAGAAAGATTGAAAAGCT-TGAGTACC-TTCTCAATGTATTAAATACCCATTTAATTTAAAAATTAAGCTCACTGTGCTCAATGGCCTTTGAACGAGCTTTCCAGATCCTGCTCAGACTTGCCTATGACATAGGAATGAAAGAACCTATAAATTTATGAACCAATCTACCTTAACTAACTTGTTAAGTGTTCCTGCAT--CAAGCAGAA-G----------------------------------------------AA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9405000 417 -  19069880 CTTTCTGCATACTTTGATTTAATGACTTCCTACCCTC-AGGTATTAAAATCACCTGCAGAAATCCACACTGAAAACCTGAGCTTGAGAAATGTAGCAAT----AACTAACCCCTTGAGCAGAAAAAT--AAAACTTGAGTTCAAGCCCATCAGATTCAAATAGCAAGCCTGGATGAAAGAGAAAGACTGAAAGATTCCAAGTACT-TTCTCAATGTATTAAATATCCATTTAATTT-TAAATTAA---------GCTCACTGGCCTTATAATCACCTTTCCAG-TCCTGTTCAGACTTGCCCGGGAAAAAGGATTAAAAGAACCTATAAATTTATGACCCAATCTGCCCTAATTAACTTCTGAAGTGTTCCTGCATCACAAGCAGAA-AAAATATCAGTGAAACTGATACAGGAATTAACACCTTGGTAATCCATAA
i otoGar3.GL873548          I 155 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       382575 670 -   1458659 M

a score=366474.000000
s hg38.chr15_KI270850v1_alt    294649 84 +    430880 AACTTAAAGGagcgggatccaatcttctggcttccctgggccacgctg---gaag------aagaattgtcttgcgccacacataaaatacac
s gorGor5.CYUI01015556v1         2078 81 -   1709092 AACTTAAAGGAGCGG-Atccaatcttctggcttccctgg-ccacgctg----aag------aagaactgtcttgcgccacacataaaatacac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19255868 87 - 121039945 AAATTAAAGGagtggtatccaatcttctggcttccctgggccacactggaagaag------aagaattgtgttgtgccacacataaaatacac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107049219 81 - 169600520 AAATTAAAGGagcggtatccaatcttctggcttccctgggccacactg------g------aagaactgtcttgcaccacacataaaatacac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65404697 81 + 171882078 AAATTAAAGGagcggtatccaatcttctggcttccctgggccacactg------g------aagaactgtcttgcaccacacataaaatacac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        53537 80 +   6271500 AAATTAAAGGagcggtatccaatcttct-gcttccctgggccacactg------g------aagaactgtcttgcaccacacataaaatacac
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        48114 80 -   5160157 AAATTAAAGGAGCTgtatccaatcttct-gcttccctgggccacactg------g------aagaactgtcttgcaccacacataaaatacac
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3888733 81 +  24206276 AAATTAAAGGagtggtatccaatcgtctggcttcccttggccacactg------g------aagaactgtcttgcaccacacataaaatacac
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3829587 73 -   4111199 AAATTAAAGGAGCAGTA--------tctggcttccctgggccacactg------g------aagaactaacttgcaccacacataaaatacac
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18120860 84 + 132174527 AAATTAAAGGAGCAgtgtccaatcttctggcttccctgggccacactg------g---aaaaagaattgtctttggccacataaaaaatacac
i calJac3.chr10             C 0 I 1515
s saiBol1.JH378108           49617823 83 +  54856640 AAATTAAAGGATCAgtgtccaatcttctggcttccctgggccacactg------g----aaaagaactgtctttggccatataaaaaataaac
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39857411 87 +  42888418 AAATTAAAGGAGCAgtgtcccatcttctggcttccctgggccacactg------gaaaaagaagaagtgtctgtggccatataaaaaatacac
i aotNan1.NW_018505940v1    C 0 C 0
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9405417  0 -  19069880 C
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       382575 670 -   1458659 M

a score=132400.000000
s hg38.chr15_KI270850v1_alt    294733 34 +    430880 gaacactaataatagctgctaagcttt----aaaaaaa-
s gorGor5.CYUI01015556v1         2159 34 -   1709092 taacactaataatagctgctaagcttt----aaaaaaa-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19255955 34 - 121039945 taacactagtaatagctgctaagcttt----aaaaaaa-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107049300 34 - 169600520 taacactaataatagccgctaagcttt----aaaaaaa-
i rheMac8.chr7              C 0 I 4
s macFas5.chr7               65404778 34 + 171882078 taacactaataatagccgctaagcttt----aaaaaaa-
i macFas5.chr7              C 0 I 4
s macNem1.NW_012011056v1        53617 38 +   6271500 taacactaataatagccgctaagctttaaaaaaaaaaa-
i macNem1.NW_012011056v1    C 0 I 4
s cerAty1.NW_012001384v1        48194 34 -   5160157 taacactaataatagccgctaagcttt----aaaaaaa-
i cerAty1.NW_012001384v1    C 0 M 540
s chlSab2.chr29               3888814 34 +  24206276 taacactaataatagccgctaagcttt----aaaaaaa-
i chlSab2.chr29             C 0 I 9
s colAng1.NW_012116021v1      3829660 34 -   4111199 taacactaataatagccgctaagcttt----aaaaaaa-
i colAng1.NW_012116021v1    C 0 I 3
s saiBol1.JH378108           49617906 32 +  54856640 taatac---taataaccgataagcttt----aaaaaaaa
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39857498 32 +  42888418 taacac---taatagctgataagcttt----taaaaaaa
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18120944 1515 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9405417  0 -  19069880 C
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       382575 670 -   1458659 M

a score=59362.000000
s hg38.chr15_KI270850v1_alt    294767 25 +    430880 ttgcaaaaaag-gaaaatctca-taat
s gorGor5.CYUI01015556v1         2193 26 -   1709092 ttgcaaaaaaaagaaaatctca-taat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19255989 26 - 121039945 ttgcaaaaaaa-gaaaatctcattaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107049338 25 - 169600520 ttgcaaaaaaa-gaaaatctca-caat
i rheMac8.chr7              I 4 C 0
s macFas5.chr7               65404816 25 + 171882078 ttgcaaaaaaa-gaaaatctca-caat
i macFas5.chr7              I 4 C 0
s macNem1.NW_012011056v1        53659 25 +   6271500 gtgcaaaaaca-gataatctca-caat
i macNem1.NW_012011056v1    I 4 C 0
s chlSab2.chr29               3888857 25 +  24206276 ttgcaaaaaaa-gaaaatctca-caat
i chlSab2.chr29             I 9 C 0
s colAng1.NW_012116021v1      3829697 25 -   4111199 ttccaaaaaaa-gaaaatctca-caat
i colAng1.NW_012116021v1    I 3 C 0
s saiBol1.JH378108           49617938 25 +  54856640 ttacaaaaaaa-caaaaatctc-aaat
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39857530 25 +  42888418 ttacaaaaaac-aaaaacaaac-aaag
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18120944 1515 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9405417  0 -  19069880 C
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       382575 670 -   1458659 M
e cerAty1.NW_012001384v1        48228 540 -   5160157 M

a score=15002.000000
s hg38.chr15_KI270850v1_alt    294792 12 +    430880 ----tt----tttg---tttgtt
s gorGor5.CYUI01015556v1         2219 11 -   1709092 ----tt----tttg---tttgt-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19256015 12 - 121039945 ----tt----tttg---tttgtt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107049363 16 - 169600520 ----tttttgtttg---tttgtt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65404841 16 + 171882078 ----tttttgtttg---tttgtt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        53684 12 +   6271500 ----tt----tttg---tttgtt
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29               3888882 12 +  24206276 ----tt----tttG---TTTGTT
i chlSab2.chr29             C 0 I 1365
s colAng1.NW_012116021v1      3829722 12 -   4111199 ----tt----tttg---tttgtt
i colAng1.NW_012116021v1    C 0 I 1
s calJac3.chr10              18122459  9 + 132174527 ----TC----tttg---ttt---
i calJac3.chr10             I 1515 C 0
s saiBol1.JH378108           49617963 13 +  54856640 ggttgg----tttg---ttt---
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39857555 12 +  42888418 ----ca----tttgagattt---
i aotNan1.NW_018505940v1    C 0 C 0
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9405417  0 -  19069880 C
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       382575 670 -   1458659 M
e cerAty1.NW_012001384v1        48228 540 -   5160157 M

a score=-854.000000
s hg38.chr15_KI270850v1_alt    294804 6 +    430880 g--tgagg
s gorGor5.CYUI01015556v1         2230 6 -   1709092 g--tgagg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19256027 6 - 121039945 t--tgaga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107049379 5 - 169600520 ---tggaa
i rheMac8.chr7              C 0 I 1
s macFas5.chr7               65404857 5 + 171882078 ---tggaa
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011056v1        53696 5 +   6271500 ---tggaa
i macNem1.NW_012011056v1    C 0 I 1
s colAng1.NW_012116021v1      3829735 8 -   4111199 gtttggaa
i colAng1.NW_012116021v1    I 1 I 1
s calJac3.chr10              18122468 6 + 132174527 --ttaaga
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49617976 6 +  54856640 --ttaaga
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39857567 6 +  42888418 --acaaga
i aotNan1.NW_018505940v1    C 0 C 0
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873548            9405417 0 -  19069880 C
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       382575 670 -   1458659 M
e chlSab2.chr29               3888894 1365 +  24206276 I
e cerAty1.NW_012001384v1        48228 540 -   5160157 M

a score=391279.000000
s hg38.chr15_KI270850v1_alt    294810 92 +    430880 tggagcctcactctgtcacccaggccggagtgcagtggcaccatcttggctcactgcaacctctgcctcctgggttcaag-ccattctcctgc
s gorGor5.CYUI01015556v1         2236 91 -   1709092 tggagcctcactctgtcacccaggctggagtgcagtggcaccatcttggctcactgcaacctctgcctcctgggttcaag-cgattctc-tgc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19256033 92 - 121039945 tggagtctcactctgtcacccaggctggagtgcagtggcaccatcttggctcactgcaacctctgccgcctgggttcaag-tgattctcctgc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107049385 92 - 169600520 tggagtctcactctgtcacccaggctggagtgcagtggcatgatcctggctcactgcaacctctgcctcctgggttcaag-cgattctcctgc
i rheMac8.chr7              I 1 C 0
s macFas5.chr7               65404863 92 + 171882078 tggagtctcactctgtcacccaggctggagtgcagtggcatgatcctggctcactgcaacctctgcctcctgggttcaag-cgattctcctgc
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011056v1        53702 91 +   6271500 tggagtctcactctgccacccaggctggagtgcagtggcatgatcctggctcactgcaacctctgcctcctgggttcaagccgat--ttctgc
i macNem1.NW_012011056v1    I 1 C 0
s manLeu1.NW_012105520v1       383265 92 -   1458659 tggagtctcactctgtcacccaggctggagtgcagtggcatgatcctggctcactgcaacctctgcctcctgggttcaag-cgagtctcctgc
i manLeu1.NW_012105520v1    M 670 C 0
s colAng1.NW_012116021v1      3829744 92 -   4111199 tggagtctcactctgtcacccaggatggagtgcagtggcatgatcctggctcactgcaacctctgcctcctgggttcaag-caattctcccgc
i colAng1.NW_012116021v1    I 1 C 0
s calJac3.chr10              18122474 85 + 132174527 cagagtctcaccctgttgcccaggctttagtgcagtagtataatcttggctta-------ctctgcctcctggattcaag-caattctcctgc
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49617982 92 +  54856640 cagagtctcactctgttgcccaggctgtagtgcagtagcataatcttggctcactgcaacctctgtctcctgggtccatg-caattctcccgc
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39857573 92 +  42888418 cagagtctcactctgtcgcccaggctgtagtgcagtagcataatcttggctcactgcaacctctgcctcctgggttcaag-caattctcctgc
i aotNan1.NW_018505940v1    C 0 C 0
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9405417  0 -  19069880 C
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29               3888894 1365 +  24206276 I
e cerAty1.NW_012001384v1        48228 540 -   5160157 M

a score=868047.000000
s hg38.chr15_KI270850v1_alt    294902 194 +    430880 ctcagcctcccgagtagct-gggatgataggcgtgtgccaccatgcccagctaattttcgtatttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctg-----------------acctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccaccgtgcccggccaatgtttt
s gorGor5.CYUI01015556v1         2327 192 -   1709092 -tcagcctcccgagtagct-gggatgataggcgtgtgccaccatgcccagctaattttcgt-tttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctg-----------------acctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccaccgtgcctggccaatgtttt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19256125 194 - 121039945 ctcagcctcccgagtagct-gggattataggcgcgtgccaccacgcccagctaatttttgtacttttagtagagacggggtttcaccatgttggccaggctggtctcgaactcctg-----------------acctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccaccatgcccggccaatgtttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107049477 180 - 169600520 ctcagcctcccaagtagct-gggattataggcgcatgccaccacgcccagctaatttttgtatttttagtagag-------------atgctggccaggctggtctcgaactcctg------------------cctcaggtgatccacccgcctcggcctcctaaagtgctaggattacaggcgtgagccaccatgcccggccaatgtttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65404955 180 + 171882078 ctcagcctcccaagtagct-gggattataggcgcatgccaccacgcccagctaatttttgtatttttagtagag-------------atgctggccaggctggtctcgaactcctg------------------cctcaggtgatccacccgcctcggcctcctaaagtgctaggattacaggcgtgagccaccatgcccggccaatgtttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        53793 174 +   6271500 ctcagcctcccgagtagctggggattataggc-catgccacc-cg-ccagctaatttttata-ttttagtagag-------------atgtt-gccaggctggtctcgaactcctg------------------cctcaggtgatccacccgcctcgg-ctcctaaagtgctaggagtacaagc-tgagccaccatgcccggccaatctttt
i macNem1.NW_012011056v1    C 0 I 161
s chlSab2.chr29               3890259 180 +  24206276 ctcagcctcccgagtagct-gggattataggcgcatgccaccacacccagttaatttttgtatttttagtagag-------------atgttggccaggctggtctcgaactcctg------------------cctcaggtgatccacccgcctcagcctcctaaagtgctaggattacacgtgtgagccaccatgcccggccCatgtttt
i chlSab2.chr29             I 1365 C 0
s manLeu1.NW_012105520v1       383357 180 -   1458659 ctcagcctcccgagtagct-gggattataggcgcatgccaccacgcccagctaatttttgtatttttagtagag-------------atgctggccaggctggtctcgaactcctg------------------cctcaggtgatccacccacctcagtctcctaaagtgctaggattacaggcgtgagccaccatgcccggccaatgtttt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3829836 198 -   4111199 ctcagcctcccaagtagct-gggattataggcgcgtgccaccacgcccagctaatttttgtatttttagtaaag-------------atgttggccaggctggtctcgaactcctgcctcaggtgatccacccacctcaggtgatccacccgcctcagcctcctaaagtgctaggattacaggcgtcagccaccatgcccggccaatgtttt
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18122559 188 + 132174527 ctcagcctcccaagtagct-gggattacaggctcccatcaccatgcccagttaatt------ttttaagtagagaaagggtttcaccatgttggacagactggtctcaaactcctg-----------------acctcaggtgatctacctgccttggcttcccaaagttctgggattacaggtatgagccaccgggcacagccaatgtttt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49618074 188 +  54856640 ctcagcctcccaagtagct-gggattacaggctcccgccaccatgcccagttaatt------ttttaagtagagatagggtttcatcatgttggacaggctggtctctaactcctg-----------------acctcaggtgatctacctgccttggcctcccaaagttctgggattacaggcataagccaccgggcacagccaatgtttt
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39857665 193 +  42888418 ctcagcctcccaagtagct-gggattacaggctcccgcccccatgcccagttaattttt-tattttaagtagagacagggtttcaccatgttgtacaggctggtctcgaactcctg-----------------acctcaggtgatctatctgccttggcctcccaaagttctgggattacaggcatgagccaccgggcacagccaacgtttt
i aotNan1.NW_018505940v1    C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873548            9405417   0 -  19069880 C
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        48228 540 -   5160157 M

a score=437901.000000
s hg38.chr15_KI270850v1_alt    295096 84 +    430880 aagaacgtttacgaatttgtattgggccacattcaaagccttcacaggctgcatgcagcctgcaggccgcggttggacaagctt
s gorGor5.CYUI01015556v1         2519 83 -   1709092 aagaacgtttacgaatttgtattgggccacattcaaagccttcacaggctgcatgcagc-tgcaggccgcggttggacaagctt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19256319 84 - 121039945 aagaaagtttacgaatttgtattgggccacattcaaagccttcacaggctgcatgcagcctgcaggccgcggttggacaagctt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107049657 84 - 169600520 aagaaagtttgtgaatttgtgttgggccacattcaaagccttcacaggctgcatgcagcctgcaggacgcagttggacaagctt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65405135 84 + 171882078 aagaaagtttgtgaatttgtgttgggccacattcaaagccttcacaggctgcatgcagcctgcaggacgcagttggacaagctt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        54128 84 +   6271500 aagaaagtttgtgaatttgtgttgggccacattcaaagccttcacaggctgcatgcaccctgcaggacgcagttggacaaactt
i macNem1.NW_012011056v1    I 161 C 0
s chlSab2.chr29               3890439 84 +  24206276 aagaaagtttgtgaatttgtgttgggccacattcaaagccttcacaggctgcatgcagcctgcaggacgcagttggacaagctt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       383537 84 -   1458659 aagaaagtttgtgaatttgtgttgggccacattcaaagccttcacaggctgcatgcagcctgcaggacgcagttggacaagctt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3830034 84 -   4111199 aagaaagtttacgaatttgtgttgggccacattcaaagccttcacaggctgcgtgcagcctgcaggacacggttggacaagctt
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18122747 66 + 132174527 cagaaagtttatgaacttgtgttgggccacattcaaagcctt------------------tgcaggctgcggctggacaagctt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49618262 84 +  54856640 cagaaagtttatgaacttgtgttgggccacattcaatgcctttgcaggctgcatgcagcctgcaggctgcggctggacaagctt
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39857858 84 +  42888418 cagaaagtttatgaacttgtgttgggccacattcaaagcctttgcaggctgcatgcagcctacaggccgcggttggacaagctt
i aotNan1.NW_018505940v1    C 0 C 0
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9405417  0 -  19069880 C
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        48228 540 -   5160157 M

a score=2976859.000000
s hg38.chr15_KI270850v1_alt    295180 483 +    430880 gGATTAGAGAAATCTACAGAGACAAACTAGTGACTTAGTAGCCCTCTGATAGCTCATGATTTG-CAAGAAACTTAGGATGACTATGTGTAAAGACCACAAACATCAATTTAACTGAATGGTTCCCGCCACACTGGAATGAGGAAGCTGAGCAAACTCAGAGGACTCTAAGAAAGGGCTGATGTCATCTGAACTGTTCGGAATTATAAACTCCTCTAAACATGTTTCAAAGCCAGAACTTGTAGGAGTTGTTCTGATACACGGATTAAAAGAGGGATGACAAA--GTGTCTGTCC-CCCACACTGGTCAAAGGGACAGGTCATTGTTATGCTGGCAATGCAGGCTGCTGAAAAGAATGTATCTGTCAAAAGTAATCAAAGTAATGACCCCAGAAGGCTCCAGAAACAGACTGGTAAATTCAGGTTGCTTTCAGACTTCCACAATGCTGGCACACAAGGGGAAAGACAAAACTAACATTTACagagcat
s gorGor5.CYUI01015556v1         2602 479 -   1709092 gGATTAGAGAAATCTACAGAGACAAACTAGTGACTTAGTAGCCCTCTGATCTCTCACGATTTG-CAAGAAACTTAGGATGACTATGTGTAAAGACCACAAACATCAATTTAACTGAATGGTTCCCGCCACACTGGAATGAGGAAGCTGAGCAAACT-AGAGGACTCTA-GAAAGGGCTGATGTCATCTGAACTGTTCGGAATTATAAACTCCTCTAAACATGTTTCAAAGCCAGAACTCGTAAGAGTTGTTCTGATACACGGATTAAA-GAGGGATGACAAA--GTGTCTGTCC-CCCACACTGGTCAAAGGGACAGGTCATTGTTATGCTGGCAATGCAGGCTGCTGAAAAGAATGTATCTGTCAAAAGTAATCAAAGTAATGACCCCAGAAGGCTCCAGAAACAGACTGGTAAATTCAGGTTGCTTTCAGACTTCCACAATGCTGGCACACAAGGG-AAAGACAAAACTAACATTGACagagcat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19256403 483 - 121039945 gGATTAGAGAAATCTACAGAGACAAACTAGTGACTTAGTAGCCCTCTGATGTTTCGTGATTTG-CAAGAAACTTAGGATGACTATGTGTAAAGACCACAGACATCAATTTAACTGAATGGTTCCCACCACACTGGAATGAGGAAGCTGAGCAAACTCAGAGGACTCTAAGAAAGGGCTGATGTCATCTGAACTGTTTGGAATTATAAACTCCTCTAAACATGTTTCAAAGCCAGAACTCGTAAGAGTTGTTCTGATACACGGATTAAAAGAGGGATGACAAA--GTGTCTGTCC-CTCACACTGGTCAAAGGGACAGGTCACTGTTATGCTGGCAATACAGACTGCTGAAAAGAATGTATCTGTCAAAAGTAATCAAAGTAATGACCCCAGAAGGCTCCAGAAACAGACTGGTAAATTCAGGTTGCTTTCAAACTTCCACAATGCTGGCACACAAGGGGAAAGACAAAACTAACATTTACagagcat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107049741 483 - 169600520 gGATTAGAGAAATCTACAAAGACAAACTAGTGACCTAGCAGCCCTCTGATCTTTCGTGATTTG-CAAGAAACTTAGGATGACTATGCATAAAGATGACAAACATCAATTTAACTGAATGGTTCCCACCACATTGGAATGAGGAAGCTGAGCAAACTCAGAGGACTATAAGAAAGGGCTGATGTCATCTGAACTGTTTGAAATTATAAACTCCTCTAAATATATTTCAAAGCCAGAACTCATAAGAGTTGTTCTGACACACGGATTAAAAAAGGGATGACAAA--GTGTCTGTCC-CCCACACTGGTCAAAGGGACAGGACATTGTTATGCTGGCAACACAAGCTGCTGAAAAGAATGTATCTGTCAAAAGGAATCAAAGTAATGACCCCAGAAGGCTCCAGAAACAGACTGGTAAATGCAGGTTGCTTTTAGACTTCCACAATGCTGGCACACAAGGAGAAAGACAAAACTAACATTCACAGAGCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65405219 483 + 171882078 gGATTAGAGAAATCTACAAAGACAAACTAGTGACCTAGCAGCCCTCTGATCTTTCGTGATTTG-CAAGAAACTTAGGATGACTATGCATAAAGACGACAAACATCAATTTAACTGAATGGTTCCCACCACATTGGAATGAGGAAGCTGAGCAAACTCAGAGGACTATAAGAAAGGGCTGATGTCATCTGAACTGTTTGAAATTATAAACTCCTCTAAATATATTTCAAAGCCAGAACTCATAAGAGTTGTTCTGACACACGGATTAAAAAAGGGATGACAAA--GTGTCTGTCC-CCCACACTGGTCAAAGGGACAGGACATTGTTATGCTGGCAACACAAGCTGCTGAAAAGAATGTATCTGTCAAAAGGAATCAAAGTAATGACCCCAGAAGGCTCCAGAAACAGACTGGTAAATGCAGGTTGCTTTTAGACTTCCACAATGCTGGCACACAAGGAGAAAGACAAAACTAACATTCACAGAGCAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        54212 483 +   6271500 gGATTAGAGAAATCTACAAAGACAAACTAGTGACCTAGCAGCCCTCTGATCTTTCGTGATTTG-CAAGAAACTTAGGATGACTATGCATAAAGACGACAAACATCAATTTAACTGAAAGGTTCCCACCACATTGGAATGAGGAAGCTGAGCGAACTCAGAGGACTATAAGAAAGGGCTGATGTCATCTGAACTGTTTGAAATTATAAACTCCTCTAAATATATTTCAAAGCCAGAACTCATAAGAGTTGTTCTGACACACGGATTAAAAGAGGGATGACAAA--GTGTCTGTCC-CCTACACTGGTCAAAGGGACAGGACATTGTTATGCTGGCAACACAGGCTGCTGAAAAGAATTTATCTGTCAAAAGGAATCAAAGTAATGACCCCAGAAGGCTCCAGAAACAGACTGGTAAATTCAGGTTGCTTTTAGACTTCCACAATGCTGGTACACAAGGAGAAAGAAAAAACTAACATTCACagagcat
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29               3890523 479 +  24206276 gGATTAGAGAAATCTACACAGACAAACTAGTGACCTAGCAGCCCTCTGATCTTTCGTGATTTG-CAAGAAACTTAGGATGACGATGTGGAAAGACGACAAACATCAATTTAACTGAAAGGTTCCCACCACATTGGAATGAGGAAGCTGAGCAAACTCAGAGGACTAT----AAGGGCTGATGTCATCTGAACTGTTTGAAATTATAAACTCCTCTAAATATATTTCAAAGCCAGAACTCATAAGAGTTGTTCTGATACACGGATTAAAAGAGGGATGACAAA--GTGTCTGTCC-CCCACACTGGTCAAAGGGACAGGACATTGTTATGCTGGCAACACAGGCTGCTGAAAAGAATTTATCTGTCAAAAGGAATCAGAGTAATGACCCCAGAAGGCTCCAGAAACAGACTGGTAAATTTAGGTTGCTTTTAGACTTCCACAATGCTGGCACACAAGGAGAAAGAAAAAACTAACATTCACAGAGCAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       383621 483 -   1458659 gGATTAGAGAAATCTACAAAGACAAACTAGTGACCTAGCAGCCCTCTGATCTTTCGTGATTTG-CAAGAAACTTAGGATGACTATGCATAAAGACGACAAACATCAATTTAACTGAATGGTTCCCACCACATTGGAATAAGGAAGCTGAGCAAACTCAGAGGACTATAAGAAAGGGCTGATGTCATCTGAACTGTTTGAAATTATAAACTCCTCTAAATATATTTCAAAGCCAGAACTCATAAGAGTTGTTCTGATACATGGATTAAAAGAGGGATGACAAA--GTGTCTGTCC-CCCGCACTGGTCAAAGGGACAGGACATTGTTATGCTGGCAACACAAGCTGCTGAAAAGAATGTATCTGTCAAAAGGAATCAAAGTAATGACCCCAGGAGGCTCCAGAAACAGACTGGTAAATGCAGGTTGCTTTTAGACTTCCACAATGCTGACACACAAGGAGAAAGAAAAAACTAACATTCACagagcat
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3830118 483 -   4111199 gGATTAGAGAAATCTACAACGACAAACTAGTGACCTAGCAGCCCTCTGATCTTTCGTGATTTG-CAAGAAACTTAGGATGACTATGCGTAAAGACGACAAACATCAATTTAACTGAATGGTTCCCACCACAATGGAACGAGGAAGCTGAGCAAACTCAGAGGACTATAAGAAAGGGCTGATGTCATCTGAACTGTTTGAAATTATAAACTCCTCTAAATATATTTCAAAGCCAGAATTCCTAAGAGTTGCTCTGATACACGGATTAAAAGAGGGATGACAAA--GTGTCTGTCC-CCCACACTGGTCAAAGGGACAGGACATTGTTATGCTGGCAACACAGGCTGCTGAAAAGAATTTATCTGTCAAAAGGAATCAAAGTAATGACTCCAGAAGGTTCCAGAAACAGACTGGTAAATTCAGGTTGCTTTTAGACTTCCCCAATGCTGGCATGAAAGGAGAAAGTAAAAACTAACATTTACagagcat
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18122813 483 + 132174527 gGATTAGAAAAATCTACAGAGACAAACCAATGACTTAGCAGACCTCTGATGTTTCATGATCTG-CAAGAAACTTAGGATGACTATGCGTAAAGACCACAGACTTCAATTTAACTAAATGGTTCCCACCGCATTGGAATGAGGAAACTGAGCAAACTCAGAGGACTCTAAAGAAGAGCTGATGTCATCTGAACTGTTTGGAATTATAAACTCCTCTAAACATATTTCAAAGCCAGAACTCTTAAGAGTTGTTCTGATACATGGATTAAAAGAGGGATGACAAA--CTGTCTGTCCTCCCACACTGGTCAAAGGTACAGGTCATTGTTACGTTGGCAACATAGGCTGCTGAAAAGAATGTATCTGTCAAAAGTAATC-AAGTAATGACCCCAGAGCGCTCCAGAAAGAAACTGGTAAGTTCAGGTTGCTTTTAGACTTTTACAATGCTGGCACATAAGGGGAAAGACAAAACTAACAtgtacagagcat
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49618346 477 +  54856640 gGATTAGAAAAATCT------ACAAACTAGAGACTTAGCAGACCTCTGATGTTTCATGATCTG-CAAGAAACTTAGGACGACTATGTGTAAAGACCACAAACATCAATTTAACTGAATGGTTCCCACCACATTGGAATGAGGAAGCTGAGCAAACTCAGAGGACTCTAAGGAAGAGCTGATGTCATCTGAACTGTTTGGAATTATAAACTCCTCTAAACATATTTCAAAGCCACAACTCTTAAGAGTTGTTCTGATACATGGATTAAAAGAGGGATGACAAA--GTGTCTGTCCTCCCACACTGGTCAGAGGGGCAGGTCACCGTTATGTTGGCAACACAGGCTGCTGAAAAGAATGTATCTGTCAAAAGTAATC-AAGTAATGACCCCAGAACGCTCCAGAAACAAACTGGTAAATTCAGGTTGCTTTTAGACTTTCACAATGCTGGCACATAAGGGGAAAGATAAAACTAACATGTACAGATCAT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39857942 484 +  42888418 gAATTAGAGAAATCTACAGAGACAAACTAGTGACTTAGCAGACCTCTGATGTTTCACGATTTG-CAAAAAACTTAGGATGACTATGTGTAAAGACCACAAACATCAATTTAACTGAATGGTTCCCACCGCATTGGAATGAGGAAGCTGAGCAAACTCAGAGGACTCTAAGGAAGGGCTGATGTCATCTGAACTGTTTGGAATTATAAACTCCTCTATACATATTTCAAAGCCAGAACTCTTAAGAGTTGTTCTGATACATGGATTAAAAGAGGGATGACAAA--GTATCTGTCCTCCCACACTGGTCAAAGGGACAGGTCATTGTTATGTTGGCAACACAGGCTGCTGAAAAGAATGTATCTGTCAAAAGTAATCAAAGTAATGACCCCAGAACGCTCCAGAAACAAACTGGTAAATTCAGGTTGCTTTTAGATTTCTACAATGCTGGCACATAAGGGGAAAGACAAAACTAACAtgtgcagagcat
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9405417 468 -  19069880 GGATTAGAGAAATCCATGGAAACAAATGAGTGACTTACCAGTCCCCTGATGTTTCATGATTTGCCAAGAAACTTAGAATGAC-------------CACAAATATCAATTTACCTGAATGGTCCCCA-TGCACTTGAGTGAGAAAGCCAGTGAAACACAGATGGCTCTGAGCAAAGGCCAGTATCATCTGAACTGTTTAAAATTATGAACTCATCTAAACATATTTCAAAGCCAGAACCCGTAGGAGTTGTTCTGATACAAGAATCAGAAGAGGGATAATGAAGTGTGTCTGTCTTCTAGCACTGGTCAAAGGGACACGTCATTGTTATGGTGGCAACACACACTTCTGAAAAGAATGTATCTGACAAAAGTAATCAAAGTAATGACCCCAGAACGGACCAGAAATGGACTAGTAAATTCAGGTTGCTTTTAGACTTCTCC-ATGCCGGTACACAAGAGGAAAGATGAAACTAACATTT----AGTAT
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        48228 540 -   5160157 M

a score=3048001.000000
s hg38.chr15_KI270850v1_alt    295663 505 +    430880 tatatttgatattacatttaatccccattaaaaagatactatttccc--gtttcactagtg-aaaaagttga-tctttcaaaggttaaattatttaacaccaaggtc-aaagggtaagttggagagaccagattcaaacccagtctgacattaaaacatgtgttttc-cccc-cacatc--------GTCTCCTGC----TAATAACCTCAAATCTAAAAACTGACTTG-CCCTACACCTTGAG-CCCCATCCTACAAACTCTCCCTGACGTTATT-----AATTCAGCTGtcactgtgcacctacaacgtgccagacaccatactcctcaacactctgtaggcacagaaggaacagataaaaatccctaccttcatagatattatt-c----------------------------------------------------------------------taggggt-------aacacaggtaaata-----------------------aaacatta------------------------------------------------aaatagttttcacatagtagcaaattccatatagcaaaataaaac--agaagaaggaa-tagcaaatgagggagatgccctcttaaacatggtgctgagggaaggcctccctgagaa
s gorGor5.CYUI01015556v1         3081 502 -   1709092 tatatttgatattacatttaatccccattaaaaagatactatttccc--gtttcactagtg-aaaaagttga-tctttcaaaggttaaattatttaacaccaaggtc-aaagg-taagttggagagaccagattcaaacc-agtctgacattaaaacatgtgttttc-cccc--acatc--------GTCTCCTGC----TAATAACCTCAAATCTAAAAACTGACTTG-CCCTACACCTTGAG-CCC-ATCCTACAAACTCTCCCTGACGttatt-----aattcagctgtcactgtgcacctacaacgtgccagacaccatactcctcaagactctgtaggcacagaaggaacagataaaaatccctaccttcatagatattatttc----------------------------------------------------------------------taggggt-------aacacaggtaaata-----------------------aaacatta------------------------------------------------aaatagttttcacatagtagcaaattccatatagcaaaataaa-c--agaagaaggaaatagcaaatgagggaggtgccctcttaaacatggtgctgagggaaggcctccctgagaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19256886 494 - 121039945 tatatttgatattacacttaatccccattaaaaagatactatttcccctatttcactagtg-aaaaaattga-tctttcaaaggttaaatcatttaacaccaaggtc-aaagggtaagttggagagaccagattcaaacccagtctgacgttaaaacatgggttttt-ccctccacatcaTAAGAAGATTTCCTGC----TAATGACCTCAAATCTAAAAATTGA---------------------------CTACAAACTCTCCCTGACATTGTT-----AATTCAGCTGtcattgtgcacctacaatgtgccagacaccatactcctcaagactctgcaggcacagaaggaacagacaaaaatccctaccttcatagatattatt-c----------------------------------------------------------------------taggggt-------aacacagataaata-----------------------aaacatta--------------------------------------------aaataaatagttttcacatagtaacaaattctatagagaaaaataaaac--agaagaaggaa-tagcaaatgagggagacgccattttaaacatggtgctgagggaagacctccctga-aa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107050224 516 - 169600520 TATATTTTAtattacatttaatccccattaaaaagatagtatttcccctacttcaccactg-aaaaaactga-tctttcaaaggttacattatttaacaccaaggtc-aaagggtaagttggagagaccagatccaaacccagtctgatgttaaaacatgtgttttt-cccc-cacatcaTAAGAGGATCTCCTGC----TAATGACCTCAAATCTAAAAACTGACTTG-CCCTACACCTCGAGCCCCCATCCTACAAACTCTCCCTGAAGTTGTT-----AATTCAGCTGtcattgtgcacccacaatgtgccagacaccatactcctcaagattctgtaggtacagaaggaacagacaaaaatctctacctccatagatattatt-c----------------------------------------------------------------------taggggt--------acacaggtaaata-----------------------aaacatta--------------------------------------------aaataaatagctttcacacagtaacaaattctatagagaaaaataaaac-----acaaggaa-tagcaaatgaaggagatgccattttaaacatggtgctgagggaaggccaccctgagaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65405702 516 + 171882078 TATATTTTAtattacatttaatccccattaaaaagatagtatttcccctacttcaccactg-aaaaaactga-tctttcaaaggttacattatttaacaccaaggtc-aaagggtaagttggagagaccagatccaaacccagtctgatgttaaaacatgtgttttt-cccc-cacatcaTAAGAGGATCTCCTGC----TAATGACCTCAAATCTAAAAACTGACTTG-CCCTACACCTCGAGCCCCCATCCTACAAACTCTCCCTGAAGTTGTT-----AAATCAGCTGtcattgtgcacccacaatgtgccagacaccatactcctcaagattctgtagggacagaaggaacagacaaaaatctctacctccatagatattatt-c----------------------------------------------------------------------taggggt--------acacaggtaaata-----------------------aaacatta--------------------------------------------aaataaatagctttcacacagtaacaaattctatagagaaaaataaaac-----acaaggaa-tagcaaatgaaggagatgccattttaaacatggtgctgagggaaggccaccctgagaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        54695 498 +   6271500 tatattttatattacatttaatctccattaaaaagatactatttcccctacttcaccactg-aaaaaactga-tctttcaaaggttaaattatttaacaccaaggtc-aaagggtaagttggagag---------------AGTCTGATGTTAAAACATGTGTTTTT-CCCC-CACATCATAAGAGGATCTCCTGC----TAATGACCTCAAATCTAAAAACTGACTTG-CCCTACATCTCGAGCCCCCATCCTACAAACTCTCCCTGAA---GTT-----AATTCAGCTGtcattgtgcacctacaatgtgccagacaccataatcctcaagattctgtagggatagaaggaacagacaaaaatctctacctccacagatattatt-c----------------------------------------------------------------------taggggt--------acacaggtaaata-----------------------aaacatta--------------------------------------------aaataaatagctttcacacagtaacaaattctatagagaaaaataaaac-----acaaggaa-tagcaaacaaaggagatgccattttaaacatggtgctgagggaaggcctcgctgagaa
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        48774 516 -   5160157 TATATTTTAtattacatttaatctccattaaaaagatactatttcccctacttcaccactg-aaaaaactga-tctttcaaaggttacattatttaataccaaggtc-aaagggtaagttggagagaccagatccaaacccagtttgatgttaaaacgtgtgttttt-cccc-cacatcaTAAGAGGATCTCCTGC----TAATGACCTCAAATCTAAAAACTGACTTG-CCCTACACCTCGAGTCCCCATCCTACAAACTCTCCCTGATGTTGTT-----AATTCAGGTGtcattgtgcacccacaatgtgccagacaccatactcctcaagattctgtagggacagaaggaacagacaaaaatccctaccttcatagatattatt-c----------------------------------------------------------------------taggggt--------acacaggtaaata-----------------------aaacatta--------------------------------------------aaataaagagctttcacatagtaacaaattctatagagaaaaataaaac-----acaaggaa-tagcaaatgaaggagatgccattttaaacatggtactgagggaaggccaccctgagaa
i cerAty1.NW_012001384v1    M 540 C 0
s chlSab2.chr29               3891002 516 +  24206276 TATATTTTAtattacatttaatccccattaaaaagatactatttcccctacttcaccactgaaaaaaactga-tctttcaaaggttacattatttaacaccaaggtc-aaagggtaagttggagagaccagatccaaacccagtctgatgttaaaacatgtgttttt-cccc-cacatcaTAAGAGGATCTCCTGC----TAATGACCTCAAATCTAAAAACTGACTTG-CCCTACACCTCCAG-CCCCATCCTACAAACTCTCCCTGAAGTTGTT-----AATTCAGCTGtcattgtgcacccacaatgtgccagacaccatactcctcaagattctgtaggtacagaaggaacagacaaaaatcgctacctccatagagactatt-c----------------------------------------------------------------------taggggt--------acacaggtaaata-----------------------aaacatta--------------------------------------------aaataaatagctttcacacagtaacaaattctatagagaaaaataaaac-----acaaggaa-tagcaaatgaaggagatgccattttaaacatggtgctgagggaaggccaccctgagaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       384104 516 -   1458659 tatattttatattacatttaatctccattaaaaagatactatttcccctacttcaccactg-aaaaaactga-tctttcaaaggttacattatttaacaccaaggtc-aaagggtaagttggagagaccagatccaaacccagtctgatgttaaaacatgtgttttt-cccc-cacatcaTAAGAGGATCTCCTGC----TAATGACCTCAAATCTAAAAACTGACTTG-CCCTACACCTCGAGTCCCCATCCTACAAACTCTCCCTGATGTTGTT-----AATTCAGGTGtcattgtgcacccacaatgtgccagacaccatactcctcaagattctgtagggacagaaggaacagacaaaaatccctaccttcatagatattatt-c----------------------------------------------------------------------taggggt--------acacaggtaaata-----------------------aaacatta--------------------------------------------aaataaagagctttcacatagtaacaaattctatagagaaaaataaaac-----acaaggaa-tagcaaatgaaggagatgccattttaaacatggtgctgagggaaggccaccctgagaa
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3830601 519 -   4111199 tatattttatactacatttaatccccattaaaaagatactatttcccctacttcaccactg-aaaaaactga-tctttcaaaggttaaattatttaacaccaaggtc-aaagggtaagttggagagaccagattcaaacccagtctgatgttaaaacatgtgtttttccccc-catatcaTAAGATGATCTCCTGC----TAATGACCTCAAATCTAAAAATTGACTTG-CCCTACACCTCGAG-CCCCAGCCTACAAACTCTCCCTGAAGTTGTT-----AATTCAGCTGtcattgtgcacctacaatgtgccagacaccataatcctcaagattctgtaggtacagaaggaacagacaaaaatctctacctccatagatattatt-c----------------------------------------------------------------------taggggt--------acacaggtaaata-----------------------aaacatta--------------------------------------------aaataaatagctttcacacagtaacaaattctatagagaaaaataaaac--agaagaaggaa-tagcaaatgaaggagatgccattttaaacatggtgctgacggaaggcctccctgagaa
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18123296 494 + 132174527 tatgtttgatattacatttaatcctcattaaaaaga---tatttcccccatttcactcgtg-aaaaaactga-tctttcaaaggttaaattatttaacaccaacgtc-aaagggtaagttgaaga-accagattcaaacccagtctgacactaaaacatgtgttttt-cccttcacatcaTAAGACAATCTCCTGC----TAACAACCTCAAATCTAA------ACTTG-CCCTACACCTCTAG-CTCCATTCTACAAACTCTCCATGACATTGtt-----aattcagc-attattgtgcatctacagtgt-------accaca---ctcgaagctctgcaggtacagaaggatccgagaaaaatccctaccttcgtagatattatt-c----------------------------------------------------------------------taggggt-------aacacaagtaaata-----------------------aaacatt-------------------------------------------------gaatagttttcagatagtaacaaattctgtagagaaaaataaaac--agaagaagaaa-tagcaaatgagggggatggcaatttaaacatggtgctgagggaaggcctccctgagaa
i calJac3.chr10             C 0 I 1
s saiBol1.JH378108           49618823 492 +  54856640 TATGTTGGAtattacatttaatcctcattaaaaagatactatttcccctatttcactagtg-aaaaaactga-tctttcaaaggttaaattatttaacaccaaggtc-aaagggtaagttgaaga-accagattcaaacccagtctgacgttaaaac--gtgttttt-cccttcacatcGTAAGATGATCTCCTGC----TAACAACCTCCAATCTAA------ACTTG-CCCTACACTTCTAG-TTCCATTCTACCAACTCTGCCTGACATTGTG-----AACTCAGC-Atcattgtgcacctccagtgt-------accacactcctcaaggctctgcaggtacagaaggatcagacaaaaatccctaccttcataggtattatt-c----------------------------------------------------------------------taggggt-------aacacaggtaaata-----------------------aaacact-------------------------------------------------gaatagttttcagatagtaacaaattctgtag------ataaaac--agaagaagaaa-tagcaaatgagggggatggcaatttaaacatggtgctgagggaaggcctccctgagaa
i saiBol1.JH378108          C 0 I 1
s aotNan1.NW_018505940v1     39858426 495 +  42888418 tatgttggatattacatttaatcctcattaaaaagatactatttcccctatttcactagtg-aaaaaactga-tctttcaaaggttaaattatgtaacaccaaggtc-aaagggtaagttgaaga-accagattcaaacccagtctgacattaaaacatgtgttttt-cccttcacatcaTAAGACGATCTCCTGC----TAACAACCTCAAATCTAA------ACTTG-CCCTACACCTCTAG-CTCCATTCTACAAACTCTCCCTGATATTGtt-----aattcagc-atcattgtgcacttacagtgt-------accacactcctcaaggctctgcaggtacagaaggatcagacaaaaatccctaccttcatagatattatt-c----------------------------------------------------------------------taggggt-------aacacaggtaaata-----------------------aaacatt-------------------------------------------------gaataattttcagatagtaacaaattctgtagagaaaaataaaac-------aagaca-tagcaaatgaaggggatggcaatttaaatatggtgctgagggaaggcctccctgagaa
i aotNan1.NW_018505940v1    C 0 I 18
s otoGar3.GL873548            9405885 620 -  19069880 ------------------------------AAAATATGCTATTTCTTCCATTTCACTGGTG-AAAATTTTAAGTCTTTCAAAGGT---------TAACATCAAAGTTGAAAAATTAAGTGGGAGGGCCCAATTTCAAGACCAGTCTGA---------ACGTGTTTTT-CTCC-CACATCATAAGGGGCTCTCCTGCAAATTAACAAGCTCAAATTTAAAAAGTGACTTGCCCCTCTACCTCT---CACTCTCCTACCAATTCTCCCTGACTTTGTTGTTACAATTCAACTATCACTGTGTACCTACCATGTGCCCTGTGCAA-GCTCCTCGATGCTGTCAGGGTGCAGAAGGAACAGAC-----TTTCTACCTTCGCAAACCTTATT-CAAATCAATTAAACGTGGAAATAAATGTTTTTCACACACCTTATGTGTGAAAGTGGCTCTACCTAACAAAACAGGGACTCTACTTAACAAAATCAAATATTTTGACCTGGTTGTTGGTACCCTAACATTAACCTGAAATAAATTTGCTTTGcaaaaaaaaaaaaaaaaagaaagaaagaaatgtttgtcagatagtactaagttctacagacaaaaataaaacaaagaaggaggaa-cagcaaatgaaggaaaaaccatgttaaacaggatgctgagggacagacaccttgaaa-
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=75433.000000
s hg38.chr15_KI270850v1_alt    296168 22 +    430880 agata----tcatttaccccaaaaat
s gorGor5.CYUI01015556v1         3583 21 -   1709092 agata----tcatttaccccaaaa-t
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19257380 22 - 121039945 agata----tcatttaccccaaaaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107050740 22 - 169600520 agata----tcatttacctcaaaaat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65406218 22 + 171882078 agata----tcatttacctcaaaaat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        55193 22 +   6271500 agata----tcatttaccccaaaaat
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        49290 22 -   5160157 agata----tcattCACCCCAAAAAT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3891518 22 +  24206276 agata----tcatttaccccaaaaat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       384620 22 -   1458659 agata----tcatttaccccaaaaat
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3831120 22 -   4111199 agata----ccatttaccccaaaaat
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18123791 15 + 132174527 AGTTA-----CCGCCCCCCC------
i calJac3.chr10             I 1 C 0
s saiBol1.JH378108           49619316 20 +  54856640 AGTTACCCACCCCCCACCCC------
i saiBol1.JH378108          I 1 C 0
s otoGar3.GL873548            9406505 22 -  19069880 aggtg----acattcatccccaatga
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39858921 18 +  42888418 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=633775.000000
s hg38.chr15_KI270850v1_alt    296190 107 +    430880 aaaaaagcaagtaatag-aaaaaacaggtaaaaggtgttcta------------------------------------------------------------gacaCTT-AAACCTGCC---ACATTGAGAACTC-AGGGTTCTGATGCAAAACCTCGCTGCATAGAATGCAT
s gorGor5.CYUI01015556v1         3604 107 -   1709092 aaaaaagcaagtaatag-aaaaaacaggtaaaaggtgttcta------------------------------------------------------------gacaCTT-AAACCTGCC---ACACTGAGAACTC-AGGGTTCTGATGCAAAACCTCGCTGCATATAATGCAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19257402 108 - 121039945 aaaaaagcaagtaatag-aaataacaggtgaaaggtgttcta------------------------------------------------------------gacaCTT-AAACCTGCCACAACACTGAGAACTC---GGTTCTGATGCAAAACCTCGCTGCATATAATGGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107050762 170 - 169600520 aaaaaagcaagtaagag-aAAAATCAGGTAAAAGATGTTTTACCTTTTAACATCTTTAAGTGTTTTACCTTTAAGTGTCACCTTACTTTAAAAGTAAAAGGTGACACTT-AAACCTGCCACAACATTGAGAACTC-AGGGTTCTGATGTGAAACCTCACTGCATATAATGCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65406240 170 + 171882078 aaaaaagcaagtaagag-aAAAATCAGGTAAAAGATGTTTTACCTTTTAACATCTTTAAGTGTTTTACCTTTAAGTGTCACCTTACTTTAAAAGTAAAAGGTGACACTT-AAACCTGCCACAACATTGAGAACTC-AGGGTTCTGATGTGAAACCTCACTGCATATAATGCAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        55215 146 +   6271500 aaaaaagcaagtaagagaAAAAAACAGGTAAAA-ATGTTTTACCTTTTAAAA-------------CACCTT-----------TTCCTTTAAAAGTAAAAGGTGACACTT-AAACTGGCCACAACATTGAGAACTC-AGGGTTCTGATGCAAAACCTCGCtgcatataatgcat
i macNem1.NW_012011056v1    C 0 I 20
s cerAty1.NW_012001384v1        49312 169 -   5160157 AAAAAAACAAGTAAGAG-AAAAATCAGGTAAAG-ATGTTTTACCTTTTAACATCTTTAAGTGTTTTACCTTTAAGGGTCACCTTACTTTAAAAGTAAAAGGTGACACTT-AAACTGGCCACAACATTGAGAACTC-AGGGTTCTGATGCGAAACCTCGCTGCATATAATGCAT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3891540 170 +  24206276 aaaaaagcaagtaagag-aAAAATCAGGTAAAAGATGTTTTACCTTTTAACATCTTTAAGTGTTTTACCTTTAAGTGTCACCTTACTTTAAAAGTAAGAGGTGACACTT-AAACCTGCCACAACATTGAGAACTC-AGGGTTCTGATGCAAAACCTCACTGCATATAATGCGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       384642 170 -   1458659 aaaaaaacaagtaagag-aAAAATCAGGTAAAAGATGTTTTACCTTTTTACATCTTTAAGTGTTTTACCTTTAAGTGTCACCTTACTTTAAAAGTAAAAGGTGACACTT-AAACTGGCCACAACATTGAGAACTC-AGGGTTCTGATGCGAAACCTCACTGCATATAATGCAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3831142 146 -   4111199 aaaaaagcaagtaagag-aAAAAACAGGTAAAAGATGTTTTACCTTTTAAAA-------------CACTTT-----------TTACTTTAAAAGTAAAAGGTGACACTT-AAACTGGCCACAACATTGAGAACTC-AGGGTTCTGATGCAAAACCTCGCTGCATATAATGCGT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18123806 110 + 132174527 TCAAAAATAGGTAACAG-AAATAACAGGTAAAAAGTGTTCTG------------------------------------------------------------CACACTTAAAACTTGCCACAACATTGAGAACTC-AGGGTTCG-ATGCAAAACTTTGCTGCATATAATGCAT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49619336 109 +  54856640 CCAAAAAAAGGTAAAAG-AAATAACAGGTAAAAGGTGTTCTA------------------------------------------------------------CACACTT-AAACTTGCCGCAACACTGAGAACTC-AGGGTTCT-ATGTAAAACTTCACTGCATATAATGCAC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39858939 106 +  42888418 ---AAAAAAGGTAACAG-AAATAACAGGTAAAAGGTGTTCTA------------------------------------------------------------CACACTT-AAACTTGACACAACATTGAAAACTC-AGGGTTCT-ATGCAAAACTTCGCTGCATATAATGCAT
i aotNan1.NW_018505940v1    I 18 C 0
s otoGar3.GL873548            9406527 110 -  19069880 cacaaagcaagtagtag-ggaTAACAGGAAAAAGG-GTTCTC------------------------------------------------------------AACCCGT-AAGCCTGCTGCAACATTGAGAACTCAAGAGTTTGGGGGCAAAACCTTGCTGCATATAGAGCAG
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=12495.000000
s hg38.chr15_KI270850v1_alt    296297 8 +    430880 TAACTTA--T-
s gorGor5.CYUI01015556v1         3711 8 -   1709092 TAACTTA--T-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19257510 8 - 121039945 TAACTTA--T-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107050932 7 - 169600520 TAACTTA----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65406410 7 + 171882078 TAACTTA----
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1        49481 8 -   5160157 TAACTTAT---
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3891710 7 +  24206276 TAACTTA----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       384812 7 -   1458659 TAACTTA----
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3831288 8 -   4111199 TCACTTA-T--
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18123916 7 + 132174527 TCACTTA----
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49619445 7 +  54856640 TCACTTA----
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39859045 7 +  42888418 TCACTTA----
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9406637 8 -  19069880 TAACTGA---T
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e macNem1.NW_012011056v1        55361 20 +   6271500 I

a score=997155.000000
s hg38.chr15_KI270850v1_alt    296305 161 +    430880 -----------TTTTATACATTTAAACAAACAAACTC----TACTTAAGAACTGTGTTCTAAAGGAAGGAGCATATTACAG-GAAGGCAATTTTT-GGTCAGAGTAGACACACTTAAAAACTAAACCTATTGAAAGACCAAGAACAACTG-AAAGTCTTTGCTTTGTC---AGATTTTTGAC----------
s gorGor5.CYUI01015556v1         3719 162 -   1709092 -----------TCTTATACATTTAAACAAACAAACTC----TACTTAAGAACTGTGTTCTAAAGGAAGGAGCATATTACAG-GAAGGCAGTTTTTTGGTCAGAGTAAACACACTTAAAAACTAAACCTATTGAAAGACCAAGAACAACTG-AAAGTCTTTGCTTTGTC---AGATTTTTGAC----------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19257518 154 - 121039945 -----------T-TTATACATTTAAACAAACAAACTC----TACTTAAGAACTGTGTTCTAAAGGAAGGAGCATATTACAG-GAAGGCAGTTTTT-GGTCAGAGTAAACACACTGAAAAACTAAACCTATTGAAAGACCAAGACCAATTG-AAAGTCTTTGCT---------GATTTTTGAC----------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107050939 157 - 169600520 -----------TTTTATACATTT----AAACAAACTC----TACTTAAGAACTGTGTTCTAAAGGAAGGAGCATATTACAG-GAAGGCAGTTTTC-GGTCAGAGTAAACACACTTAAAAACTAAACCTATTGAAAGACCAAGACCCACTG-AAAGTCTTTGCTTTGTC---AGATTTTTGAC----------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65406417 157 + 171882078 -----------TTTTATACATTT----AAACAAACTC----TACTTAAGAACTGTGTTCTAAAGGAAGGAGCATATTACAG-GAAGGCAGTTTTC-GGTCAGAGTAAACACACTTAAAAACTAAATCTATTGAAAGACCAAGACCCACTG-AAAGTCTTTGCTTTGTC---AGATTTTTGAC----------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        55381 157 +   6271500 -----------TTTTATACATTT----AAACAAACTC----TACTTAAGAACTGTGTTCTAAAGGAAGGAGTATATTACAG-GAAGGCAGTTTTC-GGTCAGAACAAACACGCTTAAAAACTAAACCTATTGAAAGACCAAGACCCACTG-AAAGTCTTTGCTTTGTC---AGATTTTTTAC----------
i macNem1.NW_012011056v1    I 20 C 0
s cerAty1.NW_012001384v1        49489 156 -   5160157 ------------TTTATACATTT----AAACAAACTC----TACTTAAGAACAGTTTTCTAAAGGAAGGAGCATATTACAG-GAAGGCAGTTTTC-AGTCAGAGTAAACACACTTAAAAACTAAATCTATTGAAAGACCAAGACCCACTG-AAAGTCTTTGCTTTGTC---AGATTTTTGAC----------
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3891717 157 +  24206276 -----------TTTTATACATTG----AAACAAACTC----TACTTAAGAACTGTGTTCTAAAGGAAGGAGCATATTACAG-GAAGGCAGTTTTC-GGTCAGAGTAAACACACTTAAAAACTAAACCTATTGAAAGACCAAGACCCACTG-AAAGTCTTTGCTTTGTC---AGATTTTTGAC----------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       384819 157 -   1458659 -----------TTTTATACATTT----AAACAAACTC----TACTTAAGAACTGTTTTCTAAAGGAAGGAGCATATTACAG-GAAGGCAGTTTTC-AGTCAGAGTAAACACACTTAAAAACTAAACCTATTGAAAGACCAAGACCCACTG-AAAGTCTTTGCTTTGTC---AGATTTTTGAC----------
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3831296 155 -   4111199 ------------TTTATACATTT----AAACAAACTC----TA-TTAAGAACTGTGTTCTAAAGGAAGGAGTCTATTACAG-GAAGGCAGTTTTC-GGTCAGAGTAAACACACTTAAAAACTAAACCTATTGAAAGACCAAGACCCACTG-AAAGTCTTTGCTGTGTC---AGATTTTTGAC----------
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18123923 162 + 132174527 -----------TTTTACACATTT----AAACAAACTCACTCTACTTAAGAACTGTGTTCTAAAGGAAGGAGCATATTACAAAGAAGGCAGGTTTT-GGTCAGAGTAAACATACTTAATAACTAAACATATTGAAAGACCAAGACCAACTG-AAAGTCTTTGCTTTGTC---AGATTTTTGAC----------
i calJac3.chr10             C 0 I 10
s saiBol1.JH378108           49619452 153 +  54856640 -----------TTTTACACATTT----AAACAAACTCACC---------AACTGTGTTCTAAAGGAAGGAGTATATTACAGAGAAGGTAGTTTTT-GGTCAGAGTAAACACACTTAATAACTAAACATATTGAAAGACTAAGACCAACTG-AAAGTCTTTGCTTTGTC---AGATTTTGGAC----------
i saiBol1.JH378108          C 0 I 10
s aotNan1.NW_018505940v1     39859052 163 +  42888418 -----------TTTTACACATTT----AAACAAACTCATTCTACTTAAGAACTGTGTTCTAAAGGAAGGAGCATATTACAAAGAAGGCAGTTTTT-GGTCAGAGTAAACACACTTAATAACTAAACATATTGAAAGACCAAGACCAACTGAAAAGTCTTTGCTTTGTC---AGATTTTTGAC----------
i aotNan1.NW_018505940v1    C 0 I 57
s otoGar3.GL873548            9406645 168 -  19069880 GTGCACGTTTAATTTAAACATTT----AAACACATTT------GTTGAGACCTGAGCTCT-AAGGAAGAAGCACATCACAG-GAAGGCAGCCTGT-GAT--GAGCAAACACACTTGG-AGCCAGACCTAC----ATGCCAA---CAACTG-GAAGGCTTGGCTTTGGCAAGAGATTTTTGATCATGCCTTTC
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=115572.000000
s hg38.chr15_KI270850v1_alt    296466 23 +    430880 CAAAAGGAAAATTAAAGA-----------AACAC
s gorGor5.CYUI01015556v1         3881 22 -   1709092 CAAA-GGAAAATTAAAGA-----------AACAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19257672 23 - 121039945 CAAAAGGAAAATTAAAGA-----------AACAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107051096 23 - 169600520 CAAAAGGAAAATTAAAGA-----------AACAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65406574 23 + 171882078 CAAAAGGAAAATTAAAGA-----------AACAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        55538 23 +   6271500 CAAAAGGAAAATTAAAGA-----------AACAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        49645 23 -   5160157 CAAAAGGAAAATTAAAGA-----------AACAC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3891874 23 +  24206276 CAAAAGGAAAATTAAACA-----------AACAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       384976 23 -   1458659 CAAAAGGAAAATTAAAGA-----------AACAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3831451 23 -   4111199 CAAAAGGAAAATTAAAGA-----------AACAC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18124095 34 + 132174527 CAAAAGGAAAATTTTTAATTTTCCTTTTTAAAAT
i calJac3.chr10             I 10 I 13
s saiBol1.JH378108           49619615 34 +  54856640 CAAACGGAAAATTTTAAATTTTCCTTTTTAAAAC
i saiBol1.JH378108          I 10 I 13
s otoGar3.GL873548            9406813 23 -  19069880 CAAAAAGAAAATTAAAGA-----------AAAGC
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39859215 57 +  42888418 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=281501.000000
s hg38.chr15_KI270850v1_alt    296489 36 +    430880 ACCGTGCCCATCCAATGATTTCACCAAGGAATTTTA
s gorGor5.CYUI01015556v1         3903 36 -   1709092 ACCATGCCCATCCAATGATTTCACCAAGGAATTTTA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19257695 36 - 121039945 ACCATGCCCATCCAATGATTTCACCAAGGAATTTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107051119 36 - 169600520 ACCATGCCCATCCAATGATTTCACCAAGGAATTTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65406597 36 + 171882078 ACCATGCCCATCCAGTGATTTCACCAAGGAATTTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        55561 36 +   6271500 ACCATGCCCATCCAATGATTTCACCAAGGAATTTTA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        49668 36 -   5160157 ACCATGCCCATCCAACGATTTCACCAAGGAATTTTA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3891897 36 +  24206276 ACCATGCCCATCCAATGATTTCACCAAGGAATTTTA
i chlSab2.chr29             C 0 I 10
s manLeu1.NW_012105520v1       384999 36 -   1458659 ACCATGCCCATCCAATGATTTCACCAAAGAATTTTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3831474 36 -   4111199 ACCATGTCCATCCAATGATTTCACCAAGGAATTTTA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18124142 36 + 132174527 ACCATGCCCATCCAATGATTTCACCAAGGAATTTTA
i calJac3.chr10             I 13 C 0
s saiBol1.JH378108           49619662 36 +  54856640 ACCATGCCCATCCAATAATTTCGCCAAGAAATTTTA
i saiBol1.JH378108          I 13 C 0
s aotNan1.NW_018505940v1     39859272 36 +  42888418 ACCATGCCCATCTAATGATTTCAACAAGGAATTTTA
i aotNan1.NW_018505940v1    I 57 C 0
s otoGar3.GL873548            9406836 36 -  19069880 ACTACATCCAGCCAGTGATTTCACCAAGGAATTTTA
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=182278.000000
s hg38.chr15_KI270850v1_alt    296525 24 +    430880 AGAGAGAAAATCCTAC---TTCTTCCT
s gorGor5.CYUI01015556v1         3939 23 -   1709092 GAAGA-AAAATCCTAC---TTCTTCCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19257731 24 - 121039945 AGAGAGAAGATCCTAC---TTCTTCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107051155 24 - 169600520 AGAGAGAAAATCCTAC---TTCTTCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65406633 24 + 171882078 AGAGAGAAAATCCTAC---TTCTTCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        55597 24 +   6271500 AGAGAGAAAATCCTAC---TTCTTCCT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        49704 24 -   5160157 AGAGAGAAAATCCTAC---TTCTTCCT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20103177 24 -  24206276 AGAGAGAAAATCCTAC---TTCTTCCT
i chlSab2.chr29             n 10 C 0
s manLeu1.NW_012105520v1       385035 24 -   1458659 AGAGAGAAAATCCTAC---TTCTTCCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3831510 24 -   4111199 AGAGAGAAAATCCTAC---TTCTTCCT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18124178 24 + 132174527 AGGGAGAAAATCCTAC---TTCTTCCT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49619698 24 +  54856640 AGGGAGAAAATCCTAC---TTCTTCCT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39859308 24 +  42888418 AGGGAGAAAATCCTAC---TTCTTCCT
i aotNan1.NW_018505940v1    C 0 I 2
s otoGar3.GL873548            9406872 27 -  19069880 AGAAAGAAAATCCTACAATTTCTTCCT
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=654460.000000
s hg38.chr15_KI270850v1_alt    296549 106 +    430880 CACCCAGTAGCCAGTGAAATGACTGAGCAAATT--CACAAGTTCACTGGGGCTGCTTTCATGTAACACAGGGACAACACATGACAGACACAGTGGAACCCTACAGGTT
s gorGor5.CYUI01015556v1         3962 105 -   1709092 CACC-AGTAGCCAGTGAAATGACTGAGCAAATT--CACAAGTTCACTGGGGCTGCTTTCATGTAACACAGGGACAACACATGACAGACACAGTGGAACCCTACAGGTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19257755 104 - 121039945 CACCCAGTAGCCAGTGAAATGACTGAGCAAATT--CACAAGTTCACTGGGGCTGCTTTCATGTAACACAGGGACAGTACATGACAG--ACAGTGGAACCCTACAGGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107051179 106 - 169600520 CACCCAGTAGCCAGTGAAATGACTGAGGAAATT--CACAAGTTCACTGGGGCTGTTTTCATGTAACACAGGGACAACACATGACAGAGACAGTGGAACCCTACAGGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65406657 106 + 171882078 CACCCAGTAGCCAGTGAAATGACTGAGCAAATT--CACAAGTTCACTGGGGCTGTTTTCATGTAACACAGGGACAACACACGACAGAGACAGTGGAACCCTACAGGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        55621 106 +   6271500 CACCCAGTAGCCAGTGAAACGACTGAACAAATT--CACAAGTTCACTGGGGCTGCTTTCATGTAACACAGGGACAATACATGACAGAGACAGTGGAACCCTATAGGTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        49728 106 -   5160157 CACCCAGTAGCCAGTGAAATGACTGAGCAAATT--CACAAGTTCACTGGGGCTGCTTTCATGTAACACAGGGACAACACATGACAGAGACAGTGGAACTCTACAGGTT
i cerAty1.NW_012001384v1    C 0 I 1582
s chlSab2.chr29              20103201 106 -  24206276 CACCCAGTAGCCAGTGAAATGACTGAGCAAATT--CACAAGTTCACTGGGGCTGCTTTCATGTAACACAGGGACAACACATGACAGACACAATGGAACCCTACAGGTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       385059 106 -   1458659 TACCCAGTAGCCAGTGAAATGACTGAGCAAATT--CACAAGTTCACTGGGGCTGCTTTCATGTAACACAGGGACAACACATGACAGAGACAGTGGAACCCTACAGGTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3831534 106 -   4111199 CACCCAGTAGCCAGTGAAATGACTGAACAAATT--CACAAGTTCACTGGGGCTGCTTTCATGTAACACAGGGACAATACATGACAGAGACAGTGGAATCCTACAGGTT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18124202 106 + 132174527 TACCCTGTAACCAGTGAAATGACTGAGCAAATT--CACAAGGTCACTGGGGCTACTTTCATGTAACACAGAAACAGTACATGACAGACACAGTGGCACAGCACAGGTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49619722 106 +  54856640 TACCCATTAACCAGTGAAATGACTGAGCAAATT--CACAACATCACTGGGGCTGCTTTCACGTAACACAGAAACAATACATGACAGACACAGTGGAACAGCACAGGTT
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873548            9406899 107 -  19069880 TATCCAGCAACCAG-GGAATGACTGAGCAAATTCACACAAGTTCGCCAGGGCTGCTTTCCTGTAACTCAAGGACAATACATGACCAACACAGTGGGACTGTAAAGCTT
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39859332   2 +  42888418 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=593126.000000
s hg38.chr15_KI270850v1_alt    296655 122 +    430880 GCCTAGTATTTGAAAGACTGTGAAGAGGAGGAGA--TGTCAAAATTCAAAGTCTTAAATGATGTAGTTTTAAGTATGTTCAGCAATTTCACCACTCAGTAGTAAAGCCAGCTACAGTTGAAAGC
s gorGor5.CYUI01015556v1         4067 122 -   1709092 GCCTAGTATTTGAAAGACTGTGAAGAGGAGGAGA--TGTCAAAATTCAAAGTCTTAAATGATGTGGTTTTAAGTATGTTCAGCAATTTCACCACTCAGTAGTAAAGCCAGCTACAGTTGAAAGG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19257859 120 - 121039945 GCCTAGTATTTGAAAGAC--TGAAGAGGAGAAAA--TGTCAAAATTCAAAGTCTTAAATGATGTGGTTTTAAGTATGTTCATCAATTTCAGCACTCAGTAGTAAAGCCAGCTACAGTTGTAAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107051285 122 - 169600520 GCCTAGTATTTGAAAGAATGTGAAGAGGAGGAAA--TGTCAAAATGCAAAGTCTTAAATGATGTGGTTTTAAGTATGTTCATCAATTTCACCACTCAGGAGTAAAGCCAGCTATAGTTGTAAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65406763 122 + 171882078 GCCTAGTATTTGAAAGAATGTGAAGAGGAGGAAA--TGTCAAAATGCAAAGTCTTAAATGATGTGGTTTTAAGTATGTTCATCAATTTCACCACTCAGGAGTAAAGCCAGCTATAGTTGTAAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        55727 122 +   6271500 GCCTAGTATTTGAAAGACTGTGAAGAGGAGGAAA--TGTCAAAATTCAAAGTCTTAAATGATGTGCTTTTAAGTATGTTCATCAATTTCACCACTCAGGAGTAAAGCCAGCTATAGTTGTAAGG
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20103307 122 -  24206276 GCCTAGTATTTGAAAGACTGTGAAGAGGAGGAAA--TGTCAAAATTCAAAGTCTTAAATGATGTGCTTTTAAGTATGTTCATCAATTTCACCACTCAGGAGTAAAGCCAGCTATAGTTGTAAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       385165 122 -   1458659 GCCTAGTATTTGAAAGACTGTGAAGAGGAGGAAA--TGTCAAAATTCAAAGTCTTAAATGATGTGCTTTTAAGTATGTTCATCAATTTCACCACTCAGGAGTAAAGCCAGCTGTAGTTGTAAGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3831640 122 -   4111199 GCCTAGTATTTGAAAGACTGTGAAGAGGAGGAAA--TGTCAAAATTCAAACTCTTAAATGATGTGGTTTTAAGTATGTTCATCAATTTCACCACTCAGGAGTAAAGCCAGCTATAGTTGTAAGG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18124308 124 + 132174527 GCCTACTATTTGAAAGACTGTCAAGAGGAGGAAATATGTCAAAATTCAAAGTCTTAAATGATATGGTTTTAACTATGTTCATCAATTTTACCACTCAGTAGTAAAGTCAACTACAGTTATAAGG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49619828 122 +  54856640 GCCTACTATTTGAAAGAC--TTAAGAGGAGGAAATGTGTCAAAATTCAAAGTCTTAAATGATGTAGTTTTAAGTATGTTCATCAATTTTACCACTCAGTAGTAAAGTCAGCTACAGTTGTAAGG
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873548            9407006  91 -  19069880 GCCGAGT-----AAAGACTATGACGAGGAGGAAA--TATCAAAATTCAAAGACTTAAATGATGTGGTT--------------------------TCAGTATAAAAACCAGCTAGTGTCGTGAGG
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39859332   2 +  42888418 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        49834 1582 -   5160157 I

a score=191679.000000
s hg38.chr15_KI270850v1_alt    296777 30 +    430880 AATCAGAAATTTGAGGGGTGTG---AAATAAGC
s gorGor5.CYUI01015556v1         4189 30 -   1709092 AATCAGAAATTTGAGGGGTGTG---AAATAAGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19257979 30 - 121039945 AATCAGAAATTTGAGTGGTGGG---AAATAAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107051407 30 - 169600520 AATCAGAAATATGAGGGGTGTG---AAATAAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65406885 30 + 171882078 AATCAGAAATATGAGGGGTGTG---AAATAAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        55849 30 +   6271500 AATCAGAAATATGAGGGGTGTG---AAATAAGC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        51416 30 -   5160157 AATCAGAAATATGAGGGGTGTG---AAATAAGC
i cerAty1.NW_012001384v1    I 1582 C 0
s chlSab2.chr29              20103429 30 -  24206276 AATCAGAAATTTGAGGGGTGTG---AAATAAGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       385287 30 -   1458659 AATCAGAAATATGAGGGGTGTG---AAATAAGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3831762 30 -   4111199 AATCAGAAATTTGAGGGGTGTG---AAATAAGC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18124432 30 + 132174527 AATCAGAAATTTGAGGGGTATG---AAATAAGC
i calJac3.chr10             C 0 I 180
s saiBol1.JH378108           49619950 30 +  54856640 AATCAGAAATTTGAGGGGTGTG---AAATAAGC
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873548            9407097 33 -  19069880 AGTCACAAAGTTGAGGGGTATGAATAAATAAGC
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39859332  2 +  42888418 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=62391.000000
s hg38.chr15_KI270850v1_alt    296807 15 +    430880 AGAAGCACAGAAGTT
s gorGor5.CYUI01015556v1         4219 15 -   1709092 AGAAGCACAGAAGTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19258009 15 - 121039945 AGAAGCACAGTAGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107051437 15 - 169600520 AGAAGCACACTAGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65406915 15 + 171882078 AGAAGCACACTAGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        55879 15 +   6271500 AGAAGCACAGTAGTT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        51446 15 -   5160157 AGAAGCACACTAGTT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20103459 15 -  24206276 AGAAGCATACTAGTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       385317 15 -   1458659 AGAAGCACACTAGTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3831792 15 -   4111199 AAAAGCACAGTAGTT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49619980 15 +  54856640 AGAAGGACAGTAGTT
i saiBol1.JH378108          C 0 I 216
s otoGar3.GL873548            9407130 11 -  19069880 AGAAATATAGT----
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39859332  2 +  42888418 I
e calJac3.chr10              18124462 180 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=91675.000000
s hg38.chr15_KI270850v1_alt    296822 17 +    430880 AAGGATTTGTATTCTTC
s gorGor5.CYUI01015556v1         4234 17 -   1709092 AAGGATTTGTATTCTTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19258024 17 - 121039945 AAGGATTTGTATTCTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107051452 17 - 169600520 AAGGACTTGTATTCTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65406930 17 + 171882078 AAGGACTTGTATTCTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        55894 17 +   6271500 AAGGATTTGTATTCTTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        51461 17 -   5160157 AAGGATTTGTATTCTTC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20103474 17 -  24206276 AAGGATTTGTATTCTTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       385332 17 -   1458659 AAGGATTTGTATTCTTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3831807 17 -   4111199 AAGGATTTGTATTCTTC
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49620211 17 +  54856640 aagaaTCTGTATTCTTC
i saiBol1.JH378108          I 216 C 0
s otoGar3.GL873548            9407141 17 -  19069880 AAGTATTTTTCCTCTTC
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39859332  2 +  42888418 I
e calJac3.chr10              18124462 180 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=511063.000000
s hg38.chr15_KI270850v1_alt    296839 94 +    430880 CCACATTTTCCACTTTATTTTATACTGCTGAG-AAAAAACAAATTTAATAGTTTTCTGCTGTATAAGAGAGACACATTCACTTTATGTCACAGTA
s gorGor5.CYUI01015556v1         4251 94 -   1709092 CCACATTTTCCACTTTATTTTATACTGCTGAG-AAAAAACAAATTTAATAGTTTTCTGCTGTATAAGAGAGACACATTCACTTTATGTCACAGTA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19258041 94 - 121039945 CCACATTTTCCACTTTATTTTATACTGATGAG-AAAAAACAAATTTAGTAGTTTTCTGCTGTATAAAAGAGACACATTCACTTTATGTCAAAATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107051469 94 - 169600520 CCACATTTTCCACTTTGTTTTATAATGCTGAG-AAAAAACACATCTAATAGTTTTCTGCTGTATAAAAGAGACACATTCACTTTATGTCAAAATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65406947 94 + 171882078 CCACATTTTCCACTTTATTTTATAATGCTGAG-AAAAAACACATTTAATAGTTTTCTGCTGTATAAAAGAGACACATTCACTTTATGTCAAAATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        55911 95 +   6271500 CCACATTTTCCACTTTATTTTATAATGCTGAGAAAAAAACAAATTTAATAGTTTTCTGCTGTATAAAAGAGACACATTCACTTTATGTCAAAATA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        51478 95 -   5160157 CCACATTTTCCACTTTATTTTATAACGCTGAGAAAAAAACACATTTAATAGTTTTCTGCTGTATAAAAGAGACACATTCACTTTATGTCAAAATA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              20103491 94 -  24206276 CCACATTTTCCACTTTATTTTATAATGCTGAG-AAAAAACACATCTAATAGTTTCCTGCTGTATAAAAGAGACACATTCACTTTATGTCAAAATA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       385349 95 -   1458659 CCACATTTTCCACTTTATTTTATAGTGCTGAGAAAAAAACACATTTAATAGTTTTCTGCTGTATAAAAGAGACACATTCACTTTATGTCAAAATA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3831824 94 -   4111199 CCACATTTTCCACTTTATTTTATAATGCTGAG-AAAAACCAAATTTAATAGTTTTCTGCTGTATAAAAGAGACACATTCACTTTATGTCAAAATA
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49620228 90 +  54856640 CCACATTTTCCAC----TTTTATAATGCTGAG-AAAAAACAAATTTAATAGTTTTCTGCTGTATAAAAGAGACACATTCACTTTATGTCAAAAAA
i saiBol1.JH378108          C 0 I 2
s aotNan1.NW_018505940v1     39859334 86 +  42888418 CCACATTTTCCAC----TTTTATAACGCTGAG-AAAAAACAAATTTACTAGTTTTCTGCTGTAT----GAGACAAATTCACTTTATGTAAAAATA
i aotNan1.NW_018505940v1    I 2 C 0
s otoGar3.GL873548            9407158 72 -  19069880 CCTCA-TTTCAACTTTAT--------ACTGAA-AAAAA----AATTAATATTTTACTGCTAT--------GACACATTCATTTCATGTCCAACA-
i otoGar3.GL873548          C 0 C 0
e calJac3.chr10              18124462 180 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=1121693.000000
s hg38.chr15_KI270850v1_alt    296933 165 +    430880 AGAGTCACTCAATTTTAATACAACTATCTCAATG-TATAAATTAACATTCTCCCCC-CTGCCCACACATAGTAAGTCTCTTATGATGTTGCTGATTAGAGAAGCAAAAGTTGCCGCTACAATTCTCTTCCTGCATTTTAATATAAACAATCATCAGTC-TTTTCTTCA
s gorGor5.CYUI01015556v1         4345 164 -   1709092 AGAGTCACTCAATTTTAATACAACTATCTCAATG-TATAAATTAACATTCTCCCCC-TTGCCCACACACAGTAAGTCTCTTATGATGTTGCTGATTAGAGAAGCAAAAGTTGCCGCTACAATTCTCTTCCTGCATTTTAATATAA-CAATAATCAGTC-TTTTCTTCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19258135 162 - 121039945 AGAGTCACTCAATTTTAATACAACTATCTCAATT-TATAAATTAACATTCTCCCCCATTGACCACACACAGTAAGTCTCTTATGGTGGTGTTGATTAGAGAAGGAAAAGTTGCTGCTACAATTCTCTTCCTACATTTTAATATAA----TCATCAGTC-TTCTCTTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107051563 161 - 169600520 --AGTCACTCGATTTTAATACAACTATCTCAATT-TATAAATTAACATTCTCCCCCACTGCCCACACATAGTAAGTCTTTTACAGTGT---TGATTAGAAAAGCAAAAGTTGCTGCTACAATTCTCTTCCTGCATTTTAATATAAACAATCATCAGTC-TTTTCTTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65407041 161 + 171882078 --AGTCACTCGATTTTAATACAACTATCTCAATT-TATAAATTAACATTCTCCCCCACTGCCCACACATAGTAAGTCTTTTACAGTGT---TGATTAGAAAAGCAAAAGTTGCTGCTACAATTCTCTTCCTGCATTTTAATATAAACAATCATCAGTC-TTTTCTTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        56006 163 +   6271500 AGAGTCACTCGATTTTAATACAACTATCTCAATT-TATAAATTAACATTCTCCCCCACTGCCCACACATAGTAAGTCTTTTACAGTGT---TGATTAGAGAAGCAAAAGTTGCTGCTACAATTCTCTTCCTGCATTTTAATATAAACAATCATCAGTC-TTTTCTTCA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        51573 163 -   5160157 AGAGTCACTCGATTTTAATACAACTATCTCAATT-TATAAATTAACATTCTCCCCCACTGCCCACACATAGTAAGTCTTTTACAGTGT---TGATTAGAGAAGCAAAAGTTGCTGCTACAATTCTCTTCCTGCATTTTAATATAAACAATCATCAGTC-TTTTCTTCA
i cerAty1.NW_012001384v1    C 0 I 2445
s chlSab2.chr29              20103585 163 -  24206276 AGAGTCACTCGATTTTAATACAACTATCTCAATT-TATAAATTAACATTCTCCCCCACTGCCCACACATAGTAAGTCTTTTACAGTGT---TGATTAGAGAAGCAAAAGTTGCTGCTACAATTCTCTTCCTGCATTTTAATACAAACAATCATCAGTC-TTTTCTTCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       385444 161 -   1458659 --AGTCACTCGATTTTAATACAACTATCTCAATT-TATAAATTAACATTCTCCCCCACTGCCCACACATAGTAAGTCTTTTACAGTGT---TGATTAGAGAAGCAAAAGTTGCTGCTACAATTCTCTTCCTGCATTTTAATATAAACAATCATCAGTC-TTTTCTTCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3831918 163 -   4111199 AGAGTCACTCAATTTTAATACAACTATCTCAATT-TATAAATTAACATTCTCCCCCACTGCCCACACATAGTAAGTCTTTTACGGTGT---TGATTAGAGAAGCAAAAGTTGCTGCTACAATTCTCTTCCTGCATTTTAATATAAACAATCATCAGTC-TTTTCTTCA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18124642 166 + 132174527 agactcATTCAATTTTAATACAACTATCTCAATT-TATAAATTAACATTCTCCCACACTGCCCACATATATTAAGTCTCTTATGGTGTTCCCGATTAGAGAAGCAAAACTTGTGGCTACAATTCTCTTCCTGCATTTTAATATAAACAATCATCAGTC-TTTTCTTCA
i calJac3.chr10             I 180 C 0
s saiBol1.JH378108           49620320 166 +  54856640 AGACTCATTCAATTTTCATACAACTATCTCAATT-TATAAATTAACATTCTCCCACACTGCCCACACATATTAAGTCTCTTATGGTGTTCCTGATTAGAGAAGCAAAACTTGTGGCTACAATTCTCTTCCTGCATTTTAATATAAACAATCATCAGTC-TTTTCTTCA
i saiBol1.JH378108          I 2 C 0
s aotNan1.NW_018505940v1     39859420 166 +  42888418 AGACTCATTCAATTTTAATACAACTATCTCAATT-TATAAATTAACATTCTCCCGCACTGCCCACCCATATTAAATCTCTTATGGTGTTCCTGATTAGAGAAGCAAAACTTGTGGCTACAATTCTCTTCCTGCATTTTAATATAAACAATCATCAGTC-TTTTCTTCA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9407230 160 -  19069880 GGACTCACCTAGTTTTAATGCAATTATTTCATTTATATAAATTAACACTATCCCTCAATGCCTACCCACAGCAAATCTGTTATAGCGC---TGATTAAAATAACAA---CTGTGGCCACAA-TCTCCTGCTGCACTTTAATATAGA-GATTATCAGCCTTTTTCTTCA
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I

a score=1495894.000000
s hg38.chr15_KI270850v1_alt    297098 276 +    430880 TAGAGTGCAGTGTGGGCACTATCATCAGAATGTACCAGCACTGGGTGTGCAAAGTTTACAAAGATTAG-CAAGAGCAAAAGTGTTGAGATTTTTGAAATTCATGCTG-CTGCAAAGAAGTATGTAAAAACTCACTCACCATAGAGGACCACACAGAAACTCAGGCATGAAGTTATATGGCTGTGTGAGTGGTTTGGGAGAAGGAACGGAAAGCACTTCCACCAACCTAT-ATGCCTGAGC-AAATTAATGCAAAACCTCAGAAGCTACAAAAAAGTTTAT
s gorGor5.CYUI01015556v1         4509 274 -   1709092 TAGAGTGCAGTGTGGACACCATCATCAGAACGTACCAGCACTGGGTGTGCAAAGTTTACAAAGATTAG-CAAGAGCAAAAGTGTTGAGATTTT-GAAATTCATGCTG-CTGCAAAGAAGTATGTAAAAACTCACTCACTATAGAGGACCACACAGAAACTCAGGCATGAAGTTATATGGCTGTGTGATTGGTTTGGGAGAAGGAACGGAAAGCACTTCCACCAACCTAT-ATGCCTGAGC-AAATTAATGCAAA-CCTCAGAAGCTACAAAAAAGTTTAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19258297 276 - 121039945 TAGAGTGCAGTGTGGACACCATCATCAGAATGTACCAGCGCTGGGTGTGCAAAGTTTACAAAGATTAG-CAATAGCAAAA-TTTGGAGATTTTTGAAATTCATGCTGCCTGCAAAGAACTATGTAAAAACTCAATCACTATAGAGGACCACACAGAAACTCAGGCATGAAGTTATATGGCTGTGTGATTGGTTTGGGAGAAGGAACAGAAAGCACTTCCACCAACCTAT-ATGCCTGAGC-AAATAAATGCAAAACCTCAGAAGCTACAAAAAAGTTTAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107051724 276 - 169600520 TAGAGTGCAGTGTAGACACCATCATCAGAATGTACCAGCGCTGGGTATGCAAAGTTCACAAAGATTAG-CAATAGCAAAAGTTTGGAGATTTTTGAAATGTATGCTGCCTGCAAAGAACTATGTAAAAACTCAATCTCTATAGGGGACCACACAGAAACTCAGGCATGAAGTTACATGGTTGTGTGATTGG-TTGGGAGAAGGAACAGAAAGCACTTCCACCAACCCAT-ATGTCTGAGC-AAATGACTGCAAAACCTTGGAAGCTACAAAACAGTTTAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65407202 273 + 171882078 TAGAGTGCAGTGTGGACAC---CATCAGAATGTACCAGCGCTGGGTATGCAAAGTTCACAAAGATTAG-CAATAGCAAAAGTTTGGAGATTTTTGAAATGTATGCTGCCTGCAAAGAACTATGTAAAAACTCAGTCTCTATAGGGGACCACACAGAAACTCAGGCATGAAGTTACATGGTTGTGTGATTGG-TTGGGAGAAGGAACAGAAAGCACTTCCACCAACCCAT-ATGTCTGAGC-AAATGACTGCAAAACCTTGGAAGCTACAAAACAGTTTAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        56169 278 +   6271500 TAGAGTGCAGTGTGGACACCATCATCAGAATGTACCAGCGCTGAGTGTGCAAAGTTTACAAAGATTAG-CAATATCAAAAGTTTGGAGATTTTTGAAATTCATGCTGCCTGCAAAGAACTATGTAAAAACTCAATCACTATAGAGGACCACACAGTAACTCCGGCATGAAGTTACATGGTTGTGTGATTGGTTTGGGAGAAGGAACAGAAAGCACTTCCGCCATCCTAT-ATGCCTGAGCAAAATTAATGCAAAACCTCAGAAGCTACAAAAAAGTTTAT
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20103748 274 -  24206276 TAGAGTGCAGTGTGGACAC---CATCAGAATGTACCAGTGCTGGGTATGCAAAGTTCACAAAGATTAG-CAATAGCAAAAGTTTGGAGATTTTTGAAATGTATGCTGCCTGCAAAGAACTATGTAAAAACTCAATCACTATAGAGGACCACACAGAAACTCAGGCATGAAGTTACATGGTTGTGTGATTGG-TTGGGAGAAGGAACAGAAAGCATTTCCACCAACTCATAATGTCTGAGC-AAATGACTGCAAAACTTCAGAAGCTATGAAAATGTTTAT
i chlSab2.chr29             C 0 I 2
s manLeu1.NW_012105520v1       385605 273 -   1458659 TAGAGTGCAGTGTAGACAC---CATCAGAATGTACCAGCGCTGGGTATGCAAAGTTCACAAAGATTAG-CAATAGCAAATGTTTGGAGATTTTTGAAATGTATGCTGCCTGCAAAGAACTATGTAAAAACCCAATCTCTATAGGGGACCACACAGAAACTCAGGCATGAAGTTACATGGTTGTGTGATTGG-TTGGGAGAAGGAACAAAAAGCACTTCCACCAACCCAT-ATGTCTGAGC-AAATGACTGCAAAACCTTGGAAGCTACAAAACAGTTTAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3832081 278 -   4111199 TAGAGTGCAGTGTGGACACCATCATCAGAATGTACCAGCGCTGAGTATGCAAAGTTCACAAAGATTAG-CAATATCAAAAGTTTGGAGATTTTTGAAATTCATGCTGCCTGCAAAGAACTATGTAAAAACTCAATCACTATAGAGGACCACACAGTAATTCAGGCATGAAGTTACATGGTTGTGTGATTGGTTTGGGAGAAGGAACAGAAAGCACTTCCACCAACCTAG-ATGCCTGAGCAAAATTAATGCAAAACCTCAGAAGCTACAAAAAAGTTTAT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18124808 267 + 132174527 CAGAATGTAGTGTGAACACCATCATCAGAATGCACCAGC-CTAGGTGTGC-AAGTTTACAAAGATTAG-CAATAGCAAAAGTTTTGGGATTTCTTAAGTTCAAGCTGCCTGCAAAGAACTATGTAAAAACTCAATCACTAGAGAGGACCACACAGAAACTCAGCCATGAAGTTACATCGCTGTGGA------TTGGGAGA--TAACAGAAAGCATCTCCACCAACCCAT-ATGCCTGAGC-AAATGAATACAAAACCTCAAAAGCTACAGAAATGTTAAT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49620486 269 +  54856640 TAGAATGCAGTGTGAGCATCATCATCAGAATGCACCAGC-CTGGGTGTGC-AAGTTTACAAAGACTAG-CAATAGCGAAAATTTTGGGATTTCTGAAGTTCAAGCTGCCTCCAAAGAACTATGTAAAAACTCAATCACTACAGAGGACCACACAGAAACTCAGGCGTGAAGTTACATCGCTGTGGA------TTAGGAGAAGGAACAGAAAGCACCTCCACCAACCCAT-ATGCCTGAGC-AAATGAATACAAAACCTCAAAAGCTACAAAAATGTTTAT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39859586 269 +  42888418 TAGAATGCAGTGTGAACACCATCATCAGAATGGACCAGC-CTGGGTGTGC-AAGTTTACAAAGATTAG-CAATAGCAAAAGTTTTGGGATTTCTGAAATTCATGCTGCCTGCAAAGAACTACGTAAAAACTCAATTGCCACAGAGGACCACACAGAAACTCAGGCATGAAGTTATAGCACTGTGGA------TTGGAAGAAGGAACAGAAAGCACCTCCACCAACCCGT-ATGCCTGAGC-AAATGAATACAAAACCTCAAAAGCTACAAAAATGTTTAT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9407390 274 -  19069880 TAGCATACACTGCAGACACCATCACAACAATGTACCAACACTGTGTGTGTAAGACCTATAAAGATCAGTTAAGAGCAAAAGTTTTGAAATTTTTGAAATTCATGCCACCTGCAAAAGAGTCTGTAGAAACTTAATTACTACGCAGGACCACACAGAAACTCAGACATGAAGTTATATGACT---TGTCTGGGGAGAAGGAAGGAACAGAAAGCAATTCCACAAGCCAGT-ATGCCTGAGC-AAACAAATGCAAAACCTTAGCAGCTACTAAAAAGATAA-
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I

a score=997203.000000
s hg38.chr15_KI270850v1_alt    297374 216 +    430880 CTACCTAAATTAAAATTGGTGTCCACAGcagtagccagcaaaatgcctgcgaagcgcaaagtgg-taaatattttagggtctgtaggtcatatggtctctgttaaacaatatgtaaatgaatgggtgtggctgtgttccaataaaacttcatttataaaaagaggcagcatggtacatccagtcagcaagctataatgtaccaacccccgGTCTAAC
s gorGor5.CYUI01015556v1         4783 215 -   1709092 CTACCTAAATTAAAATTGGTGTCCACAGCAGTAGCCAGCAAAATGCctgcgaagcgcaaagtgc-taaatattttagggtctgtaggtcatatggtctctgttaaacaatatgtaaatga-tgggtgtggccgtgtcccaataaaacttcatttataaaaagaggcagcatggtacatccagtcagcaagctataatgtaccaacccccgGTCTAAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19258573 216 - 121039945 ATACCTAAATTAAAATTGGTGCCCACAGcagtggtcagcaaagtgcctgtgaagcgcaaattgg-taaatgttttaggctctgtaggtactatgatctctgttaaacaatatgtaaatgaatgggtgtggctgtgttccaataaaactttatttataaaaagaggcagcatgttacatccagtcaacaagctataatgtaccaacccctgGTCTAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107052000 211 - 169600520 ATACCT-----AAAATTGGTGTCCACAGcagtggtcagcaaagtgcctgtgaagcgcaaatggg-taaatattttaggctctgcaggtcatatggtctctgttaaacaatatgtaaatgaatgggtgtggctgtgttccaataaagatttatttataaaaagaggcagcatgttaaatccagtcagcaagctataatgtaccaacccctgCTCTAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65407475 211 + 171882078 ATACCT-----AAAATTGGTGTCCACAGcagtggtcagcaaagtgcctgtgaagcgcaaatggg-taaatattttaggctctgcaggtcatatggtctctgttaaacaatatgtaaatgaatgggtgtggctgtgttccaataaagatttatttataaaaagaggcagcatgttaaatccagtcagcaagctataatgtaccaacccctgCTCTAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        56447 216 +   6271500 ATACCTAAATCAAAATTGGTGTCCACAGcagtgctcagcaaagtgcctgtggagcgcaaattgg-taaatattttacgctgtgcaggtcatatggtctctgttaaacaatatgtaaatgaatgggtgtggctgtgttccaataaagatttatttataaaaagaggcagcatgttaaatccagtcagcaagctataatgtaccaacccctgGTCTAAC
i macNem1.NW_012011056v1    C 0 C 0
s manLeu1.NW_012105520v1       385878 211 -   1458659 ATACCT-----AAAATTGGTGTCCACAGcagtggtcagcaaagtgcctgtgaagcgcaaatggg-taaatattttaggctctgcaggtcatatggtctctgttaaacaatatgtaaatgaatgggtgtggctgtgttccaataaagatttatttataaaaagaggcagcatgttaaatccagtcagcaagctataatgtaccaacccctgGTCTAAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3832359 216 -   4111199 ATACCTAAATTAAAATTGGCGTCCACAGcagtggtcagcaaagtgcctgtggagcgcaaattgg-taaatattttaggctctgcaggtcatatggtctctgttaaacaacatgtacatgaatgggtgtggctgtgttccaataaagatttatttataaaaagaggcagcatgttaaatccagtcagcaagctataatgtaccaacccctgGTCTAAC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18125075 210 + 132174527 ATACCTAAATTAAAACTGGTGTCCACAGcagtggtcagcaaagtgcctgagaagcgcaaactgg-taagtattttaggctctgaaggtcatatggtctctgttaaacaacatgtaaatgagtaggtgtgactgtgttccaacaaaac----tttata--aaaaggcagcaagttacatccagtcagcaaggtataacataccaacctctgGTCTAAC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49620755 212 +  54856640 ATACCTAAATTAAAACTGGTGTCCACAGTagtggtcagcaaagtgcctgtgaagcacaaattgg-taagtattttaggctctgaaggtcatacggtctctgttaaacaatatgtaaatgagtaggtgtgactgtgttccaataaaac----ttcgtaagaagaggcatcaagttataaccagtcagcaaggtatagtgtaccaacctctgGTCTAAT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39859855 213 +  42888418 ATACCTAAATTAAAACTGGTGTCCACAGcagtggtcagcaaagtgcctgtgaagcgcaaattggttaagtattttaggctctgaaggtcacatggtctctgttaaacaatatgtaaatgagcaggtgtgactgtgttccaataaaac----tgtataaaaagaggcagcaagttatatccagtcagcaaggtataacgtaccaacctctgGTCTAAC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9407664 202 -  19069880 -CACCTCAATCAAAACTGGTATCC-CAGCAGCATTCGGC--AGTTTCTGAACAGAGCCAGATGG-CAAATACTTCAAGTTTTGCAGG--------TCTCTGTtaaacaatatgaaaatgagtgggtatggca--gtttcaataaaacttaatttacaaaaagcagcagcatggtagaatgagccaacaggcaatcacgtgccaatccctgACTAGAT
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              20104022   2 -  24206276 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I

a score=173653.000000
s hg38.chr15_KI270850v1_alt    297590 43 +    430880 ACTAACCAAAT----ACCTCTTAATAAGCCAAAGAAAC---TGTGTCCTC
s gorGor5.CYUI01015556v1         4998 43 -   1709092 ACTAACCAAAT----ACCTCTTAATAAGCCAAAGAAAC---TGTGTCCTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19258789 45 - 121039945 ACTAACCAAAT----ACCTCTTAATAAGCCAAAGAAACAG-TGTGTCCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107052211 44 - 169600520 ACTAACCAAAT----ACCTCTTAATAAGCC-AAGAAACAG-TGTGTCCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65407686 44 + 171882078 ACTAACCAAAT----ACCTCTTAATAAGCC-AAGAAACAG-TGTGTCCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        56663 44 +   6271500 ACTAACCAAAT----ACCTCTTAATAAGCC-AAGAAACAG-TGTGTCCTC
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20104024 45 -  24206276 ACTAACCAAAT----GCCCCTTAATAAGCCAAAGAAACAC-TGTGTCCCC
i chlSab2.chr29             I 2 C 0
s manLeu1.NW_012105520v1       386089 44 -   1458659 ACTAACCAAAT----ACCTCTTAATAAGCC-AAGAAACAG-TGTGTCCTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3832575 44 -   4111199 ACTAACCAAAT----ATCTCTTAATAAGCC-AAGAAACAG-TGTGTCCTC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18125285 32 + 132174527 ACTAACCAAAT----ACCTCTTAATAAGCCAAAGAA--------------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49620967 32 +  54856640 ATTAACCAAAA----ACCTCTTAATAAGCCAAAGAG--------------
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39860068 32 +  42888418 GCTAACCAAAT----ACCTCTTAATAAGCCAAAGAA--------------
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9407866 50 -  19069880 ATTAAGAAAATCATAGATACCAAAACAGCCAAAGAAGCAGTTATGTCCCC
i otoGar3.GL873548          C 0 I 260
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I

a score=260404.000000
s hg38.chr15_KI270850v1_alt    297633 59 +    430880 TTAggccgg-aagcggtggctcacacctataatcccagcattttgggaggccgag-------gcggg
s gorGor5.CYUI01015556v1         5041 59 -   1709092 TTAggccgggaagtggtggctcacacctataatcc-agcattttgggaggccgag-------gcggg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19258834 65 - 121039945 TTAGG-cgg-atgtggtggctcacacctataatcccagcattttgggaggccgaaatcacctgcggg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107052255 59 - 169600520 TTGggccag-aagcggtggctcacgcctgtaatcccagcattttgggaggctgag-------gcggg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65407730 59 + 171882078 TTGggccag-aagcggtggctcacgcctgtaatcccagcattttgggaggctgag-------gcggg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        56707 59 +   6271500 TTGggccag-aagcggtggctcacgcctgtaatcccagcattttgggaggctgag-------gcggg
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20104069 59 -  24206276 TTAggttgg-atgctgtggcacatacctgtaatcccagaattttgggaggccaag-------gcagg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       386133 59 -   1458659 TTGggccag-aagcattggctcacgcctgtaatcccagcattttgggaggctgag-------gcggg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3832619 59 -   4111199 TTGggccag-aagcagtggctcacgccggtaatcccagcattttgggaggctgag-------gcggg
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18125317 56 + 132174527 ---ggctgg-gcacagtggctcacacctgtaatcctagcactttaggaggccaag-------gtggg
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49620999 56 +  54856640 ---ggttgg-gcacggtggctcacacctgtaatcctagcactttaggaggccaag-------gtggg
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39860100 56 +  42888418 ---ggctgg-ccgcggtggctcacacctgaaatcctagcactttaggaggccaag-------gcggg
i aotNan1.NW_018505940v1    C 0 C 0
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9407916 260 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I

a score=1035795.000000
s hg38.chr15_KI270850v1_alt    297692 204 +    430880 gagat-cacctgaggtcaggag-tttgagaccatcctggccaa--catggtgaaa-ccctatttctactaaaaa-tac-aaaaattagccaggcgtgctggcgggcgcctgtaatgccaactactggggaggctgaagcacgagaatcgcttgaacccaggaggcagaggttgcagcgagcctagatcacgccattgcactccagcctggg
s gorGor5.CYUI01015556v1         5100 205 -   1709092 gagat-cacctgaggtcaggag-tttgagaccatcctggccaa--catggtgaaaaccctatttctaccaaaaa-tac-aaaaattagccaggcgtggtggcgggcgcctgtaatgccaactactggggaggctgaagcacgagaatcgcttgaacccaggaggcagaggttgcagcgagcctagatcacgccattgcactccagcctggg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19258899 204 - 121039945 gagat-cacctgaggtcaggag-tttgagaccatcctggccaa--catggtgaaa-ccctatttctactaaaaa-tac-aaaaattagccaggcatggtggcaggcgcctgtaatcccagctactgggaaggctgaagcatgaggactgcttgaacccaggaggcagaggttgcagtgagccgagatcacgccattgcactccagcctggg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107052314 204 - 169600520 cagat-cacctgaggtcaggag-tttgagaccatcctggccaa--catggtgaaa-ccctgtttctactaaaaa-tac-aaaaattagccaggcgtggtagcaggcgcctgtaatcccagctaatggggaggctgaagcacgagaatcacttgaacccaggaggcagaggttgcagtgagatgagatcacgccattgcactccagcctggg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65407789 204 + 171882078 cagat-cacctgaggtcaggag-tttgagaccatcctggccaa--catggtgaaa-ccctgtttctactaaaaa-tac-aaaaattagccaggcgtggtagcaggcgcctgtaatcccagctaatggggaggctgaagcacgagaatcacttgaacccaggaggcagaggttgcagtgagatgagatcacaccattgcattccagcctggg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        56766 203 +   6271500 cagat-cacctgaggtcaggag-tttgagaccatcctggccaa--catggtgaaa-ccctgtttctactaaaaa-tac-aaacattagccaggcgtggtagcaggcgcctgtaatcccagctaacggggaggctgaagcacgag-atcacttgaaaccaggaggcagaggttgcagtgagatgagatcgcgccattgcactccagcctggg
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20104128 203 -  24206276 tacat-cacct-cagtcaggag-tttgagaccatcctggccaa--catggtgaaa-ccccatctctataaaaaa-tac-aaaaattagccgagtgtggtggcaggcacctgtaatcccagttactggggaggctgaagcatgagaatcatttgaacctgggaggcagaggttgcagtgagcccagatggcaccattgcactccagcctggg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       386192 194 -   1458659 ca-----------ggtcaggag-tttgagaccatcctggccaa--cacggtgaaa-ccctgtttctactaaaaa-tac-aaaaattagccaggcgtggtagcaggcacctgtaatcccagctaatggggaggctgaagcacgagaatcacttgaacccaggaggcagaggttgcagtgagatgagatcacgccattgcactccagcctggg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3832678 204 -   4111199 cagat-cacctgaggtcaggag-tttgagaccatcctggccaa--catggtgaaa-ccctgtttctactaaaaa-tac-aaaaattagccaggcgtggtagcaggcgcctgtaatcccagctaatggggaggctgaagcatgagaatcacttgaacccaggaggcagaggttgcagtgagacgagatcgcaccattgcactccagcctggg
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18125373 207 + 132174527 tagat-tgcctgagctcaggagtttcgagactagcctgggcaa--cacagtgaaa-ctccgcctctactaaaaactacaaaaaattagccaggcgtggcggcatgcacctgtagtcccagctactcaggaggctgaggcaggagaattccaagaacccaggaggcggaggttgcagtgagccaagatcatgccactgcactccagtctggg
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49621055 206 +  54856640 tggat-tgcctgagctcaggag-ttcgagaccagcctgggcaa--cacggtgaaa-ccccgcctctactaaaaattacaaaaaattagccaggcatggcggcatgtgcctgtagtcccagcttctcaggaggctgaggcaggagaattccaagaacccaggaggcggaggtcacaatgagctgagatcatgccactgcactccagtctgga
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39860156 206 +  42888418 tggat-tgcctgagctcaggaa-ttcgagaccagcctgggcaa--cacggtgaaa-ccccgcctctactaaaacctacaaaaaattagcagggcgtggaagcatgcgactgtagtcccagctactcaggaggctgaggcaggagaactccaagaacccaggaggcggaggttgcagtgagccgagatcatgccactgcactccagtctggg
i aotNan1.NW_018505940v1    C 0 I 88558
s otoGar3.GL873548            9408176 195 -  19069880 -aaatacaccaaagctgggggg-tttgag-----cctggcccaggcctgctaaac-aacaatgacaactgtaac---c-aaaatatagccaggcattgtggcaggtg-ctgtagacccagctactcagaaggctgaggcaagagaatcacttaagcccaagagtttgaggttgctatgagctgtga---catcatggcaccctaccgagga
i otoGar3.GL873548          I 260 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I

a score=46606.000000
s hg38.chr15_KI270850v1_alt    297896 17 +    430880 caacaagagagaaactc
s gorGor5.CYUI01015556v1         5305 17 -   1709092 caacaagagagaaactc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19259103 15 - 121039945 caacaagagagaaa--c
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107052518 17 - 169600520 caacaagagagaaactg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65407993 17 + 171882078 caacaagagagaaactg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        56969 15 +   6271500 caac--gagagaaactg
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20104331 17 -  24206276 caacaagagagaaactc
i chlSab2.chr29             C 0 I 87699
s manLeu1.NW_012105520v1       386386 17 -   1458659 caacaagagagaaactg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3832882 17 -   4111199 caacaagagagaaactg
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18125580 16 + 132174527 -tggcaaagtgagactc
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49621261 16 +  54856640 -tgggaaagtgagactc
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873548            9408371 16 -  19069880 -tgacatagtgagactc
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39860362 88558 +  42888418 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I

a score=31827.000000
s hg38.chr15_KI270850v1_alt    297913 22 +    430880 cgtctcaa------------aaaaaaaaaaggaa-
s gorGor5.CYUI01015556v1         5322 21 -   1709092 cgtctcaa------------aaacaaaaa-ggaa-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19259118 21 - 121039945 cattaaaa------------aaaaaaaaa-aaaa-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107052535 30 - 169600520 cgtctcag---gaaaaaaaaaaaaagaaa-gaaa-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65408010 28 + 171882078 cgtctcag-----aaaaaaaaaaaagaaa-gaaa-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        56984 29 +   6271500 cgtctcag----aaaaaaaaaaaaaaaaa-ggaa-
i macNem1.NW_012011056v1    C 0 C 0
s manLeu1.NW_012105520v1       386403 33 -   1458659 cgtctcagaaaaaaaaaaaaagaaagaaa-gaaa-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3832899 20 -   4111199 cgtctcag-------------aaaaaaaa-gaaa-
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18125596 21 + 132174527 catctcca------------aaaaaaaTG-TCAA-
i calJac3.chr10             C 0 I 97545
s saiBol1.JH378108           49621277 21 +  54856640 catctcca------------aaacaaaaa-acaa-
i saiBol1.JH378108          C 0 I 1
s otoGar3.GL873548            9408387 22 -  19069880 tgtctcaa------------aaaTaacaa-caaca
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39860362 88558 +  42888418 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              20104348 87699 -  24206276 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I

a score=4095.000000
s hg38.chr15_KI270850v1_alt    297935 1 +    430880 a
s gorGor5.CYUI01015556v1         5343 1 -   1709092 a
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19259139 1 - 121039945 a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107052565 1 - 169600520 a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65408038 1 + 171882078 a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        57013 1 +   6271500 a
i macNem1.NW_012011056v1    C 0 C 0
s manLeu1.NW_012105520v1       386436 1 -   1458659 a
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3832919 1 -   4111199 a
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49621299 1 +  54856640 a
i saiBol1.JH378108          I 1 I 92771
s otoGar3.GL873548            9408409 1 -  19069880 a
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39860362 88558 +  42888418 I
e calJac3.chr10              18125617 97545 + 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              20104348 87699 -  24206276 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I

a score=18356.000000
s hg38.chr15_KI270850v1_alt    297936 8 +    430880 taaaagta
s gorGor5.CYUI01015556v1         5344 8 -   1709092 taaaagta
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19259140 8 - 121039945 aaaaaGca
i nomLeu3.chr6              C 0 I 7475
s rheMac8.chr7              107052566 8 - 169600520 taaaagta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65408039 8 + 171882078 taaaagta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        57014 8 +   6271500 taaaagta
i macNem1.NW_012011056v1    C 0 C 0
s manLeu1.NW_012105520v1       386437 8 -   1458659 Taaaagta
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3832920 8 -   4111199 gaaaagta
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873548            9408410 8 -  19069880 caacaaca
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39860362 88558 +  42888418 I
e calJac3.chr10              18125617 97545 + 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              20104348 87699 -  24206276 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e saiBol1.JH378108           49621300 92771 +  54856640 I

a score=27255.000000
s hg38.chr15_KI270850v1_alt    297944 16 +    430880 tacaaagtgaaaacaa---
s gorGor5.CYUI01015556v1         5352 16 -   1709092 tacaaagtgaaaacaa---
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107052574 16 - 169600520 tacaaagtgaaaatga---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65408047 16 + 171882078 tacaaagtgaaaatga---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        57022 16 +   6271500 tacaaagtgaaaatga---
i macNem1.NW_012011056v1    C 0 C 0
s manLeu1.NW_012105520v1       386445 16 -   1458659 tacaaagtgaaaatga---
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3832928 16 -   4111199 tacaaagtgaaaatga---
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873548            9408418 16 -  19069880 ---agaacaataataataa
i otoGar3.GL873548          C 0 I 71521
e aotNan1.NW_018505940v1     39860362 88558 +  42888418 I
e calJac3.chr10              18125617 97545 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              20104348 87699 -  24206276 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I
e saiBol1.JH378108           49621300 92771 +  54856640 I

a score=1149496.000000
s hg38.chr15_KI270850v1_alt    297960 646 +    430880 agaaattaaactgccctt--atttgccagtgacattactgtctatgcacaaaattccaaaaatctacaaaaaagcttctagtactaaaaatgagtttagcaaggttgtagaatccaaggtcagcatataacataaaatcaccttcctatatactagcaatcaccaactggaaattgagaagtatcattcacaacagtaccacaa-acatgaaataaatgtgtaagatttcaaaatacaagcaagatccaactgctaaaaactacaaaacactgacgaaaaatctaagaaggtctaaataaatagatataccatgttcatggctcattattaaaatgtcagttgcctcctaactgatttccagtttcaatgcaatgtcaatcaaaaaccccagcaggct-------------ctcacgcctgtaa-gccctacactttgggagaccatggtgggaggattgcttcatcccgggagtttgagaccaggctgggcaacatagagagaccctgtctctacaaaaataaaaaaattagccaggcatggcggtgcatgcatgtgatcccagctacttgggaggctgaggtgggataatcgcttggttcaaggctgcagtgagcagtgatcctgccactgcgtttcagcctgggcaactgagtgggacac-
s gorGor5.CYUI01015556v1         5368 653 -   1709092 agaaattaa-ctgccctt--atttgccagtgacattactgtctatgcacaaaattccaaaa-tctacaaaaa-gcttctagtactaaaaatgagtttagcaaggttgtagaatccaaggtcagcatataacataaaatcatcttcctatatactagcaatcaccaactggaaattgagaagtatcattcacaacagtaccacaa-acatgaaataaatgtgtaagattacaaaatacaagcaagatccaactgctaaaaactacaaaacactgacgaaaaatctaagaaggtctaaa--aatagatataccatgttcatggctcattattaaaatgtcagttgcctcctaactgatttccagtttcaatgcaatgtcaatcaaaaaccccagcaggctgggcatggtggctctcacgcctgtaaagccctacactttgggagaccatggtgggag-attgcttcatcccgggagtttgagaccaggctgggcaacatagagagaccctgtctctacaaaaataaaaaaattagccaggcatggcggtgcatgcatgtgatcccagctacttgggaggctgaggtgggataatcgcttggttcaaggctgcagtgagcagtgatcctgccactgcgtttcagcctgggcaactgagtgggac-c-
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107052590 656 - 169600520 agaaattaaactgcccttaaatttggcagtgacattactgtccatgcacaaaattccaaaaatttacaaaaaagcttctagcactaaaaatgagtttagcaaggttgtagaatccaaggtcagcatgtaacataaaatcatcttcctatagcctagcaacaaccaactggaaattgaaaagtatcattcacaacagcatcacaacccatgaaataaatatataagattacaaaatacatgcaagatccaattgctaaaaactacaaaatactgatgaaaaatctaaaaaggtctaaataaatagatataccatgctcatggctcgttattaaaacgtcaattgcctc----ctgatttccagcttcaatgcaatgccaatcaaaaaccccagcaggctgagcatggtgg--ctcacacctgtaa-gccctacactttgggagttcacggtgagaggatcacttcatccaaggagtttaagagcagcctgggcaacatagagagatcctctctctataaaaacaaaaaaattagccaggcatggtggtgcatgcatgtgagcccagttacttgggaggctgaggtgggataatcacttgggtcaaggctgcagtgagcagtgatcctgccactgcgtttcagcctgggcaactgagtgggac-cc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65408063 656 + 171882078 agaaattaaactgcccttaaatttggcagtgacattactgtccatgcacaaaattccaaaaatttacaaaaaagcttctagcactaaaaatgagtttagcaaggttgtagaatccaaggtcagcatgtaacataaaatcatcttcctatagcctagcaacgaccaactggaaattgaaaagtatcattcacaacagcatcacaacccatgaaataaatatataagattacaaaatacatgcaagatccaattgctaaaaactacaaaatactgatgaaaaatctaaaaaggtctaaataaatagatataccatgctcatggctcgttattaaaacgtcaattgcctc----ctgatttccagcttcaatgcaatgccaatcaaaaaccccagcaggctgagcatggtgg--ctcacacctgtaa-gccctacactttgggagttcacggtgagaggatcacttcatccaaggagtttaagagcagcctgggcaacatagagagatcctctctctacaaaaacaaaaaaattagccaggcatggtggtgcatgcatgtgagcccagttacttgggaggctgaggtgggataatcacttgggtcaaggctgcagtgagcagtgatcctgccactgcgtttcagcctgggcaactgagtgggac-cc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        57038 654 +   6271500 agaaattaaactgcccttaaatttggca--gacattactgtctagacacaaaattccaaaaatctacaaaaaagcttctagtactaaaaatgagtttagcaaggttgtagaatccaaggtcagcatgtaacataaaatcatcttcctatatcctagcaatgaccaactggaaattgaaaagtatcattcacaacagcatcacaacccatgaaataaatatataagattacaaaaaacatgcaagatccaattgctaaaaactacaaaacacggatgaaaaatctaagaaggtctaaataaatagatataccatgctcatggctcattattaaaatgtcaattgcctc----ctgatttccagcttcaatgcaatgccaatcaaaaaccccagcaggctgagcatggtgg--ctcacacctgtaa-gccctacactttgggagttcacggtgagaggatcacttcatccaaggagtttaagaccagcctggacaacatagagagatcctctctccacaaaaacaaaaaaattagccaggcatggtggtgcatgcatgtgagcccagttacttgggaggctgaggtgggataatcacttgggtcaaggctgcagtgagcagtgatcctgccactgcgtttcagcctgggcaactgagtgggac-cc
i macNem1.NW_012011056v1    C 0 C 0
s manLeu1.NW_012105520v1       386461 656 -   1458659 agaaattaaactgcccttaaatttggcagtgacattactgtccatgcacaaaattccaaaaatctacaaaaaggcttctagtactaaaaatgagtttagcaaggttgtagaatccaaggtcagcatgtaacataaaatcatcttcctatagcctagcaacgaccaactggaaattgaaaagtatcattcacaacagcatcacaacccatgaaataaatatataagattacaaaatacatgcaagatccaattgctaaaaactacaaaatactgatgaaaaatctaagaaggtctaaataaatagatatactatgctcatggctcgttattaaaacgtcaattgcctc----ctgatttccagcttcaatgcgacgccaatcaaaaacccCAGAAggctgagcatggtgg--ctcacacctgtaa-gccctacactttgggagttcacggtgagaggatcacttcatccaaggagtttaagaccagcctgggcaacatagagagatcctctctctacaaaaacaaaaaaattagccaggcatggtggtgcatgcatgtgagcccagttacttgggaggctgaggtgggataatcacttgggtcaaggctgcagtgagcagtgatcctgccactgcgtttcagcctgggcaactgagtgggac-cc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3832944 654 -   4111199 agaaattaaactgccctt--atttggcagtgacattactgtctatgcacaaaattccaaaaatctacagaaaagcttctagtactaaaaatgagtttagcaaggttgtagaatccaaggtcagcatgtaacataaaatcatcttcctatatcctagcaatgaccaactggaaatcgaaaagtatcattcgcaacagcaccacaacacatgaaataaatatataagattacaaaatacatgcaagatccaattgctaaaaactacaaaacactgatgaaaaatctaagaaggtctaaataaatagatacaccatggccatggctcgttattaaaatgttaattgcctc----ctgatttccagcttcaatgcaacgccaatcaaaaaccccagcaggctgagcatggtgg--ctcacacctgtaa-gccctacactttgggagttcacggtgagaggatcacttcatcccaggagtttgagaccagcctgggcaacatagagagatcctctctctacaaaaacaaaaaaattagccaggcatggtggtgcatgcatgtgagcccagttacttgggaggctgaggtgggataatcacttgggtcaaggctgcagtgagcagtgatcctgccactgcgtttcagcctgggcaactgagtgggac-cc
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018505940v1     39860362 88558 +  42888418 I
e calJac3.chr10              18125617 97545 + 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873548            9408434 71521 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              20104348 87699 -  24206276 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I
e saiBol1.JH378108           49621300 92771 +  54856640 I

a score=1773.000000
s hg38.chr15_KI270850v1_alt    298606 4 +    430880 tttt
s gorGor5.CYUI01015556v1         6021 4 -   1709092 cttt
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107053246 1 - 169600520 ---t
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65408719 1 + 171882078 ---t
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        57692 1 +   6271500 ---t
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20192047 4 -  24206276 tttt
i chlSab2.chr29             I 87699 C 0
s manLeu1.NW_012105520v1       387117 1 -   1458659 ---t
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3833598 1 -   4111199 ---t
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018505940v1     39860362 88558 +  42888418 I
e calJac3.chr10              18125617 97545 + 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873548            9408434 71521 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I
e saiBol1.JH378108           49621300 92771 +  54856640 I

a score=7886.000000
s hg38.chr15_KI270850v1_alt    298610 7 +    430880 -ttttttt
s gorGor5.CYUI01015556v1         6025 7 -   1709092 -ttttttt
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107053247 7 - 169600520 -acctttc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65408720 7 + 171882078 -atctttc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        57693 7 +   6271500 -atctttc
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20192051 7 -  24206276 -ttttttt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       387118 7 -   1458659 -atctttc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3833599 7 -   4111199 -atctttc
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49714071 7 +  54856640 TTACttt-
i saiBol1.JH378108          I 92771 C 0
e aotNan1.NW_018505940v1     39860362 88558 +  42888418 I
e calJac3.chr10              18125617 97545 + 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873548            9408434 71521 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=12285.000000
s hg38.chr15_KI270850v1_alt    298617 3 +    430880 ttt
s gorGor5.CYUI01015556v1         6032 3 -   1709092 ttt
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107053254 3 - 169600520 ttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65408727 3 + 171882078 ttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        57700 3 +   6271500 ttt
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20192058 3 -  24206276 ttt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       387125 3 -   1458659 ttt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3833606 3 -   4111199 ttt
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49714078 3 +  54856640 ttt
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39948920 3 +  42888418 ttt
i aotNan1.NW_018505940v1    I 88558 C 0
e calJac3.chr10              18125617 97545 + 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873548            9408434 71521 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=1169785.000000
s hg38.chr15_KI270850v1_alt    298620 291 +    430880 ttttttttttgagacaaggtctcgctctgtcgaccaggctggagtgaagtggtgcaatctcggctcactgcaacctccatctcctgggtt-caagtgattctcctgcctcagcctcccaagtagctgggattacaggtgcccgccaccatgcccagctaatttttctgtttttagtagaaacggggtttcaccatgttggccaggctggtcttgaactcctgaactcaagtgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgcaccaggc
s gorGor5.CYUI01015556v1         6035 290 -   1709092 ttttttttttgagacaaggtctcgctctgttgaccaggctggagtgaagtggtgcaatctcggctcactgcaacctccatctcctgggtt-caagtgattctcctgcctcagcctcccaagtagctgggattacaggtgcccgccaccatgcccagctaatttttctgtttttagtagaaacggggtttcaccatgttggccaggctggtcttgaactcctgaactcaagtgatccacc-gcctcggcctcccaaagtgctgggattacaggcatgagccaccgcaccaggc
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107053257 291 - 169600520 cttcttttttgagacgaggtcttgctctgtccaccaggctgaagaaaagtggtgcaatctcagctcactgcaacctccactgaccgggtt-caagtaattctcctgcctcagcctcccaagcagctgagattacaggtgaccgccaccatgcccagctaatttttctatttttagtagagacggggtttcgccatgttggccaggctggtcttgaactcctgaactcaagtgacccacccacctcggcctcccaaagtgctgggattacaggcatcagccaccacgccaggc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65408730 291 + 171882078 cttcttttttgagacgaggtcttgctctgtccaccaggctgaagaaaagtggtgcaatctcagctcactgcaacctccactgaccgggtt-caagtaattctcctgcctcagcctcccaagcagctgagattacaggtgaccgccaccatgcccagctaatttttctatttttagtagagacggggtttcgccatgttggccaggctggtcttgaactcctgaactcaagtgacccacccacctcggcctcccaaagtgctgggattacaggcatcagccaccacgccaggc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        57703 291 +   6271500 cttcttttttgagacgaggtcttgctctgttgaccaggcttaagtgaagtggtgcaatcttagctcactgcaacctccatcgaccgggtt-caagcaattctcctgcctcagcctcccaagtagctgagattacaggtgcccgccaccatgcccagctaatatttctatttttagtagagacggggtttcgccatgttggccaggctggtcttgaacttctgaactcaggtgatccgcccgcctcagcctcccaaaatgctgggattacaggcatgagccaccgtgccaggc
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20192061 291 -  24206276 ttttttttttgagatggagtctcactctgttgcccaggctggagtgcagtggcatgatctcggctcactgcaacctccacctcccgggtt-caagtgattctcctgcctcagcctcccaagtagctgggattaaaggcatccgccaccctgctggggtagtttctgtatttttagtagagatggggtttcaccatgatggccaggctggtcttgatctcctgacctcaactgatctgcccgcctcggcctcccaaagtgctgggattacaggcatcagccactgcgccaggc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       387128 291 -   1458659 gttcttttttgagatgaggtcttgctctgtccaccaggctgaagtgaagtggtgcaatctcagctcactgcaacctccactgaccgggtt-caagcaattctcctgcctcagcctcccaagtagctgagattacaggtgaccgccatcatgcccggctaatttttctatttttagtagagacggggtttcgccatgttggccaggctggtcttgaacttctggactcaagtgatccacccacctcagcctcccaaaatgctgggattacaagcatcagccactgtgccaggc
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3833609 291 -   4111199 cttcttttttgagacgaggtcttgctctgttgaccaggctgaagtgaagtggtgtaatctcagctcactgcaacctccatcgactgggtt-caagcaattctcctgcctcagcctcccaagtagctgagattacaggtgcccgccaccatgcccagctaatttttctatttttagtagagacggggtttcgccatgttggccaggctggtcttcaacgtctgaactcaagtgatccactcacctcagcctcccaaaatgctgggattacaggcatgacccaccgtgccaggc
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18223162 291 + 132174527 TTCCttttttgaaatagagtcacactctgtcacataggctggagtgcagtggcgtgatctcggctcactgcaaccttcacctcccaagttggaagcgattttcctgcctcagcctccccagtagccaggattaca-ccgtctgccacaacgcctggctaatttttgtattttcagtagagacagggtttcgccatgttgcccaggcgggtcttgaattcctgacctcaagtgatccgctgacctcggcctcccaaaatgctgcaattacaggcgtgagccactgagccaggc
i calJac3.chr10             I 97545 C 0
s saiBol1.JH378108           49714081 290 +  54856640 tttttttttcgagacagagtcatactctgtcacataggctggagtgcagtggtgtgatctcagttcactgcaatattcacctcccaagtt-gaagcgattttcctgcctcagcctcctgagtagccgggattaca-ccacctatcacaacacctggctaatttttgtattttcagtagagacggggtttcgtcatgttgaccaggctggtcttgaactcctgacctcaagtgatccgcccacctcggcctcccaaaatgctgcaattacaggcgtgagccactgagccaggc
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39948923 289 +  42888418 ttttttttttgagacagagtcacactctgtcacataggctggagtgcagtggcgtgatctcagctcactgcaaccttcacctcccaagtt-gaagtgattttcctgcctcagcctcccgagtagccaggattaca-ccacctgacataacgcctggctaatttttgtattttcagtagagacagggtttcgccatgttgaccaggctggtcttgaactcctgacctcaagtgat-cacccacctcggcctcccaaaatgctgcgattacaggcgtgagccactgagccaggc
i aotNan1.NW_018505940v1    C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873548            9408434 71521 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=975875.000000
s hg38.chr15_KI270850v1_alt    298911 190 +    430880 cATGAAAC--ACTTTCTTCCACCCACGGCTTTCTCTTCTCTCCCCATTTACAGCAGTAAGACAGCCTAACCTGGGAAAG----AGAGAGAG--AGGGAAGCTACTTCCAAATGGATGCCTGTCCCCATCAGTAATAACCAAGTCTATTCAAGTGC---TAGATGTTAACTTTAAAAGAAGGAAACATC-AAAAGTCCAAGTT
s gorGor5.CYUI01015556v1         6325 190 -   1709092 cATGAAAC--ACTTTCTTCCACCCACGGCTTTCTCTTCTCTCCCCATTTACAGCAGTAAGACAGCCTAACCTGGGAAAG----AGAGAGAG--AGGGAAGCTACTTCCAAATGGATGCCTGTCCCCATCAGTAATAACCAAGTCTATTCAAGTGC---TAGATGTTAACTTTAAAAGAAGGAAACATC-AAAAGTCCAAGTT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107053548 194 - 169600520 TATGAAACAAACTTTCTTCCACCCACAGCTTTCTCTTCTCTCCCCATTTACAGCAGTAAGACAGCCTAACGTGGGAAAGAC--AGAGAGAG--AGGAGAGCTACTTTCAAATGGATGTCTGTCCCCATCAGTAATAACCAAGTCTATTCAAGTGC---TAGATGTTAACTTTAAAAGAAGGGAACATC-AAAAGTCCAAGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65409021 194 + 171882078 TATGAAACAAACTTTCTTCCACCCACAGCTTTCTCTTCTCTCCCCATTTACAGCAGTAAGACAGCCTAACCTGGGAAAGAC--AGAGAGAG--AGGAAAGCTACTTCCAAATGGATGTCTGTCCCCATCAGTAATAACCAAGTCTATTCAAGTGC---TAGATGTTAACTTTAAAAGAAGGGAACATC-AAAAGTCCAAGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        57994 196 +   6271500 cATGAAACAAACTTTCTTCCACCCACAGCTTTCTCTTCTCTCCCCATTTACAGCAGTAAGACAGCCTAACCTGGGAAAGACAGAGAGAGAG--AGGGAAGCTACTTCCAAATGGACGCCTGTCCCCATCAGTAATAACCAAGTCTATTCAAGTGC---CAGATGTTAACTTTAAAAGAAGGGAACATC-AAAAGTCCAAGTT
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20192352 194 -  24206276 TATGAAACAAACTTTCTTCCACCCACAGCTTTCTCCTCTCTCCCCATTTACAGCAGTAAGACAGCCTAACCTGGGAAAGAC--AGAGAGAG--AGGGAAGCTACTTCCAAATGGACGCCTGTCCCCATCAGTAATAACCAAGTCTATTCAAGTGC---TAGATGTTAACTTTAAAAGAAGGGAACATC-AAAAGTCCAAGTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       387419 194 -   1458659 TATGAAACAAACTTTCTTCCACCCACAGCTTTCTCCTCTCTCCCCATTTACAGCAGTAAGACAGCCTAACCTGGGAAAGAC--AGAGAGAG--AGGGAAGCTACTTCCAAATGGATGTCTGTCCCCATCAGTAATAACCAAGTCTATTCAAGTGC---TAGATGTTAACTTTAAAAGAAGGAAACATC-AAAAGTCCAAGTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3833900 196 -   4111199 cATGAAACAAACTTTCTTCCACACACAGCTTTCTCTTCTCTCCCCATTTACAGCAGTAAGACAGCCTAACCTGGGAAAGAC--AGAGAGAGACAGGGAAGCTACTTTCAAATGGACGCCTGTCCCCATCAGTAATAGCCAAGTCTATTCAAGTGC---TAGATGTTAACTTTAAAAGAAGGGAACATC-AAAAGTCCAAGTT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18223453 194 + 132174527 cATGAAACAAACTTTCTTCCACCAACAGCTTTCTCCTCTCTCCCCATTTACAGCAGTAAGACAGCCTAACCTGGGAGAGAG--AGTGAGAG--AGGGAAGCTACTTCCAAATGGACGCCTGTCCCCCTCAGTAATAACCAAGTCTATTCAAGTGC---TAGATGTTAACGTTAAATGAAGGGAACATC-AAAAGTCCAAGTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49714371 191 +  54856640 cACGAAACAAACTTTCTTCCACCAACGGCTTTCTCCTCTCTCCCCATTTACAGCACTAAGACAGCCTAACCTGG--GAAAC--AGTGAGAC--AGGAAAGCTACTTCCAAATGGATGCC-GTCCCCATCAGTAATAACCAAGTCTATTCAAGGGC---TAGATGCTAACTTTAAATGAAGGGAACATC-AAGAGTCCAAGTT
i saiBol1.JH378108          C 0 I 154
s aotNan1.NW_018505940v1     39949212 194 +  42888418 cATGAAACAAACTTTCTTCCACCAACAGCTTTCTCCTGTCTCCCCATTTACAGCAGTAAGACAGCCTAACCTGGGAAACAG--AGTGAGAG--AGGGAAGCTACTTCCAAATGGATGCTTGTCCTCATCAATAATAACCAAGTCTATTCAAGTGC---TAGATGTTAACTTTAAATGAAGGGAACATC-AAGAGTCCAAGTT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9479955 172 -  19069880 CAAGAAACAAACTTCCTCCCATTAACAACTTAGTCCTCTCTCTCCATTCACGGTGGT--------------------------GGAGAAGA--AGGCA--CCATTTTCAAATGATTACTTGTCCTCATCACTAATAACTACGTCTATCCAAGTGCACTTAGATGTTAACTTTAAAAGAAAGGAACATCAAAAAGTCCAAGTT
i otoGar3.GL873548          I 71521 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=4095.000000
s hg38.chr15_KI270850v1_alt    299101 1 +    430880 T
s gorGor5.CYUI01015556v1         6515 1 -   1709092 T
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107053742 1 - 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65409215 1 + 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        58190 1 +   6271500 T
i macNem1.NW_012011056v1    C 0 C 0
s manLeu1.NW_012105520v1       387613 1 -   1458659 T
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3834096 1 -   4111199 T
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18223647 1 + 132174527 T
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49714716 1 +  54856640 T
i saiBol1.JH378108          I 154 C 0
s otoGar3.GL873548            9480127 1 -  19069880 T
i otoGar3.GL873548          C 0 I 160
e aotNan1.NW_018505940v1     39949406 0 +  42888418 C
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              20192546 0 -  24206276 C
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=3321.000000
s hg38.chr15_KI270850v1_alt    299102 1 +    430880 C
s gorGor5.CYUI01015556v1         6516 1 -   1709092 C
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107053743 1 - 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65409216 1 + 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        58191 1 +   6271500 C
i macNem1.NW_012011056v1    C 0 C 0
s manLeu1.NW_012105520v1       387614 1 -   1458659 C
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3834097 1 -   4111199 C
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18223648 1 + 132174527 C
i calJac3.chr10             C 0 I 31
s saiBol1.JH378108           49714717 1 +  54856640 C
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873548            9480288 1 -  19069880 t
i otoGar3.GL873548          I 160 C 0
e aotNan1.NW_018505940v1     39949406 0 +  42888418 C
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              20192546 0 -  24206276 C
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=270006.000000
s hg38.chr15_KI270850v1_alt    299103 112 +    430880 Agccgggtgcagtggctcatgcctgtaatcccagcactttaggaggctgaggcgggtggatcac----aaggtcaggagttcaaga----------------------------ccagcctggtcaatatggtgaaaccccgtc
s gorGor5.CYUI01015556v1         6517 112 -   1709092 ggccgggtgcagtggctcatgcctgtaatcccagcactttaggaggctgaggtgggtggatcac----gaggtcaggagttcaaga----------------------------ccagcctggtcaatatggtgaaaccccgtc
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107053744 112 - 169600520 AGAcaggcgcggtggctcatgcctgtaatcccagcactttcggaggccaaggcggggggatcac----gaggtcaggagttcgaga----------------------------ccatcctggccaatatggtgaaaccccagc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65409217 112 + 171882078 AGAcaggcgcggtggctcatgcctgtaatcccagcactttcggaggccaaggcggggggatcac----gaggtcaggagttcaaga----------------------------ccatcctggccaatatggtgaaaccccagc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        58192 112 +   6271500 AGAcaggtgcggtggctcacgcctgtaatcccagcacttttggaggccgaggcggggggatcac----gaggtcaggagttcaaga----------------------------ccatcctggccaatatgatgaaaccccatc
i macNem1.NW_012011056v1    C 0 C 0
s manLeu1.NW_012105520v1       387615 112 -   1458659 AGAcaggcacggtggctcatgcctgtaatcccagcactttcggaggccaaggcggggggatcac----gaggtcaggagttcgaga----------------------------ccatcctggccaatatggtgaaaccccagg
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3834098 112 -   4111199 AGAcaggcgtggtggctcacacctgtaatcccagcactttcggaggccgaggcgggtggatcac----gaggtcaggagttcgaga----------------------------ccatcctggccaatatggtgaaaccccatc
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49714718 112 +  54856640 Agccgggcgtggtggctcaagcctgtaatcccagaactttgggaggccgaggcgggtggatcgc----gaggtcaagagatcgaga----------------------------ctgtcttggtcaacatggtgaaactccgtc
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873548            9480289 144 -  19069880 agccaggcattgtggcgggcacctatagtcccagctacttgggaggctaaggccagagaattgcttaaaagcacaagagtctgaggttgctgtgagctatgatgctatagcactctacctagggtgacatagtgagactctgtt
i otoGar3.GL873548          C 0 I 118
e aotNan1.NW_018505940v1     39949406   0 +  42888418 C
e calJac3.chr10              18223649  31 + 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              20192546   0 -  24206276 C
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=387568.000000
s hg38.chr15_KI270850v1_alt    299215 154 +    430880 tctactaaa----aata-------------aaaaattagtcaggcatggtggcgtgtgcctgtagtcccagctactcggga----gaggcagaagattcgcttcaaccggggaagcagaggttgcagtgagccaagatcgtgctactgcactccagcctgggtgac-agagcgaga
s gorGor5.CYUI01015556v1         6629 155 -   1709092 tctactaaa----aata-----------c-aaaaattagtcaggcatggtggcgtgtgcctgtagtcccagctactcggga----gaggcagaagattcgcttcaactggggaagcagaggttgcagtgagccaagatcgtgctactgcactccagcctgggtgac-agagcgaga
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107053856 155 - 169600520 tctactaaa----aata-----------c-aaaagttagcaagacatggtggtgcgtgcctatagtcccagctactcggca----gaggcagaagattcgcttgaacccgggaggcagaggttgcagtgaaccaagatcgcaccactgcactccagcctgggtgac-agagtgaga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65409329 155 + 171882078 tctactaaa----aata-----------c-aaaagttagcaagacatggtggtgcgtgcctatagtcccagctactcggca----gaggcagaagattcgcttgaacccgggaggcagaggttgcagtgaaccaagatcgcaccactgcactccagcctgggtgac-agagtgaga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        58304 155 +   6271500 tctactaaa----aata-----------c-aaaagttagcaagacatggtggtgcgtgcctgtagtcccagctactcggca----gaggcagaagattcgcttgaacccgggaggcggaagttgcagtgagccaagatcacaccactgcactccagcctgggtgac-agagtgaga
i macNem1.NW_012011056v1    C 0 C 0
s manLeu1.NW_012105520v1       387727 155 -   1458659 tctactaaa----aata-----------c-aaaagttagcaagacacggtggtgtgtgcctgtagtcccagctactcggca----gaggcagaagattcgcttgaacccgggaggcagaagttgcagtgaaccaagatcgcaccactgcactccagcctgggtgac-agagtgaga
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3834210 154 -   4111199 tctactaaa----aata-----------c-aaaagttagcaagacatggtggtgcatgcctgtagtcccagctactcgg-a----gaggcagaagattcgcttgaacctgggaggtggaggttgcagtgagccaagatcacaccactgcactccagcctgggtgac-agagtgaga
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108           49714830 160 +  54856640 ttt-ctaaa----aata-----------caaaaaattagctgggcatggtggcatgtgcctgtaatcccagctactcaggaggctgaggcaggagaattgcctgaacccaggaggcggaggttgcggtgagccgagatcgtgccattgcactccagcctgggtaacaagagcgaaa
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873548            9480551 171 -  19069880 cccactaaacaacaatgacggctacaacc-aaaaaacagccgggcattgtggcgggtgcctgtagtcccaggtatttgagaggtagaggcaagagaatcacttgaacccaggagttggaggttgctgtgagctgtgat---gccacagcactctacccagggtgac-agcttgagg
i otoGar3.GL873548          I 118 C 0
e aotNan1.NW_018505940v1     39949406   0 +  42888418 C
e calJac3.chr10              18223649  31 + 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              20192546   0 -  24206276 C
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=44095.000000
s hg38.chr15_KI270850v1_alt    299369 32 +    430880 ctccgtctcaaaaaaaaaaa---------aaa-GTCCAAGTG
s gorGor5.CYUI01015556v1         6784 33 -   1709092 ctccgtctcaaaaaaaaaaa---------aaaaGTCCAAGTG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107054011 38 - 169600520 ttccttctcaaaaaaaaaaa---aaaaacaaa-TTCCAAGTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65409484 41 + 171882078 ttccttctcaaaaaaaaaaaaacaaaaacaaa-TTCCAAGTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        58459 28 +   6271500 ttccttctcaaaaaaaaaaG--------------TCCAAGTC
i macNem1.NW_012011056v1    C 0 C 0
s manLeu1.NW_012105520v1       387882 31 -   1458659 ttccttctcaaaaaaaaaaa----------aa-TTCCAAGTC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3834364 37 -   4111199 ttccttctcaaaaagaaaaa----aagaaaCA-GTCCAACTC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18223680 38 + 132174527 CTCAATCTCAAAAGTGTGGA----ACATCAAAAGTCCAAGTT
i calJac3.chr10             I 31 C 0
s saiBol1.JH378108           49714990 28 +  54856640 ctccgtctaaaaaaaaaaaa----aaaaaaaa----------
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873548            9480722 35 -  19069880 ctctgtctcaataacaaaaa------aagaaa-tgataaatg
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39949406  0 +  42888418 C
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              20192546  0 -  24206276 C
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=218589.000000
s hg38.chr15_KI270850v1_alt    299401 66 +    430880 ---------------------TCTTCGCCTAGCTTTGTCAG------GAATGTTTTTACC-----------CTCAGTCTG--TAAGTGTGACCAAATATATTTTTT
s gorGor5.CYUI01015556v1         6817 66 -   1709092 ---------------------TCTTCGCCTAGCTTTGTCAG------GAATGTTTTTACC-----------CTCAGTCTG--TAAGTGTGACCAAATATATTTTTT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107054049 68 - 169600520 ---------------------TCTTTGCCTAGCTTTGTCAG------GAATGTTTTTACC-----------CCAACTCTGTATAAGTGTCACCAAATATAATTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65409525 68 + 171882078 ---------------------TCTTTGCCTAGCTTTGTCAG------GAATGTTTTTACC-----------CTAACTCTGTATAAGTGTCACCAAATATAATTTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        58487 66 +   6271500 ---------------------TCTTTGCCTAGCTTGGTCAG------GAATGTTTTTACC-----------CTCACTCTG--TAAGGGTCACCAAATATAATTTTT
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20192546 66 -  24206276 ---------------------TCTTCGCCTAGCTTTGTCAG------GAATGTTTTTACC-----------CTCAATCTG--TAAGTGTGATCAAATATAATTTTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       387913 66 -   1458659 ---------------------TCTTTGCCTAGCTTGGTCAG------GAATGTTTTTACC-----------CTCACTCTG--TAAGGGTCACCAAATATAATTTTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3834401 66 -   4111199 ---------------------TCTTTGCCTAGCTTTGTCAG------GAATGTTTTTACC-----------CTCACTCTG--TAAGTGTCACCAAATATAAttttt
i colAng1.NW_012116021v1    C 0 I 347
s calJac3.chr10              18223718 66 + 132174527 ---------------------TCTTCGCCTAGCTTTGTCAG------GAATGTCTTTACC-----------CTTAATCTC--AAAGTGTGATCAAATATAATATTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49715018 39 +  54856640 ------------------------------------------------------TTTATC-----------CTCAATCTC--TAAGTGTGATCGAATATAATTTTT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39949406 66 +  42888418 ---------------------TCTTCGCCTAGCTTTGTCAG------GAATGTTTTTACC-----------CTCAATCTC--AAAGGGTGATCAAATATAATATTT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9480757 97 -  19069880 cctgaggtgatgtaataccccaattaccctgatttgattaatacactgtatgcttctatcaaaacatcacacgcaccctg--taaat---aatatatacaac----
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=60187.000000
s hg38.chr15_KI270850v1_alt    299467 21 +    430880 AAAGGT----------------------------------------TTACCCTCAATCTGT
s gorGor5.CYUI01015556v1         6883 21 -   1709092 AAAGGT----------------------------------------TTACCCTCAATCTGT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107054117 21 - 169600520 AAAGGT----------------------------------------TTAACCTCAATCTAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65409593 21 + 171882078 AAAGGT----------------------------------------TTAACCTCAATCTAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        58553 21 +   6271500 AAAGGT----------------------------------------TTACCCTCAATCTAT
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20192612 21 -  24206276 AAAGGT----------------------------------------TTACCCTCAATCTGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       387979 21 -   1458659 AAAGGT----------------------------------------TTAACCTCAATCCAT
i manLeu1.NW_012105520v1    C 0 C 0
s calJac3.chr10              18223784 61 + 132174527 AAAGGTTTACCCTCAATCTGTAAGTTTGTTCAAATTTTTAATGTTTTTACCCTCAATCTGT
i calJac3.chr10             C 0 I 12
s saiBol1.JH378108           49715057 21 +  54856640 AAAGAT----------------------------------------TTCTCCTCAATCTGT
i saiBol1.JH378108          C 0 I 12
s aotNan1.NW_018505940v1     39949472 21 +  42888418 AAAGGT----------------------------------------TTACCCTCAATCTGT
i aotNan1.NW_018505940v1    C 0 I 104
s otoGar3.GL873548            9480854 21 -  19069880 tataat----------------------------------------gtacccataaCTTTA
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3834467 347 -   4111199 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=-3753.000000
s hg38.chr15_KI270850v1_alt    299488 3 +    430880 -TAA
s gorGor5.CYUI01015556v1         6904 3 -   1709092 -TAA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107054138 3 - 169600520 -AAG
i rheMac8.chr7              C 0 I 16
s macFas5.chr7               65409614 3 + 171882078 -AAG
i macFas5.chr7              C 0 I 16
s macNem1.NW_012011056v1        58574 3 +   6271500 -AAG
i macNem1.NW_012011056v1    C 0 I 16
s chlSab2.chr29              20192633 3 -  24206276 -AAG
i chlSab2.chr29             C 0 I 16
s manLeu1.NW_012105520v1       388000 3 -   1458659 -AAG
i manLeu1.NW_012105520v1    C 0 I 16
s calJac3.chr10              18223857 2 + 132174527 -AA-
i calJac3.chr10             I 12 I 1
s saiBol1.JH378108           49715090 2 +  54856640 -AA-
i saiBol1.JH378108          I 12 I 1
s otoGar3.GL873548            9480875 3 -  19069880 AAA-
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39949493 104 +  42888418 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3834467 347 -   4111199 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=10158.000000
s hg38.chr15_KI270850v1_alt    299491 4 +    430880 GTTC
s gorGor5.CYUI01015556v1         6907 4 -   1709092 GTTC
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107054157 4 - 169600520 GTTT
i rheMac8.chr7              I 16 C 0
s macFas5.chr7               65409633 4 + 171882078 GTTT
i macFas5.chr7              I 16 C 0
s macNem1.NW_012011056v1        58593 4 +   6271500 GTTT
i macNem1.NW_012011056v1    I 16 C 0
s chlSab2.chr29              20192652 4 -  24206276 TTTT
i chlSab2.chr29             I 16 C 0
s manLeu1.NW_012105520v1       388019 4 -   1458659 GTTT
i manLeu1.NW_012105520v1    I 16 C 0
s colAng1.NW_012116021v1      3834814 4 -   4111199 GTTT
i colAng1.NW_012116021v1    I 347 C 0
s calJac3.chr10              18223860 3 + 132174527 -TTT
i calJac3.chr10             I 1 I 1
s saiBol1.JH378108           49715093 3 +  54856640 -TTT
i saiBol1.JH378108          I 1 I 1
s otoGar3.GL873548            9480878 4 -  19069880 GTAA
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39949493 104 +  42888418 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=361877.000000
s hg38.chr15_KI270850v1_alt    299495 71 +    430880 ---------------AAAGGTTTACTATAATCTCTTCATAAGAAAACTATTGGAAAGATGGAATAAAATACACAG-AAATGTCCTTA
s gorGor5.CYUI01015556v1         6911 71 -   1709092 ---------------AAAGGTTTACTATAATCTCTTCATAAGAAAACTATTGGAAAGATGGAATAAAATACACAG-AAATGTCCTTA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107054161 72 - 169600520 ---------------AAAGGTTTACTATAATCTCTTCATAAGAAAACTATTGGAAAGATGGAATAAAATATACAGAAAATGTCCTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65409637 72 + 171882078 ---------------AAAGGTTTACTATAATCTCTTCATAAGAAAACTATTGGAAAGATGGAATAAAATATACAGAAAATGTCCTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        58597 72 +   6271500 ---------------AAAGGTTTACTATAATCTCTTCATAAGAAAACTATTGGAAAGATGGAATAAAATATACAGAAAATGTCCTTA
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20192656 71 -  24206276 ---------------AAAGGTTTACTACAATCTCTTCATCAGAAAACTAATGGAAAAATGGAATAAAATCTATAG-AAATGTCCTTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       388023 72 -   1458659 ---------------AAAGGTTTACTATAATCTCTTCATAAGAAAACTATTGGAAAGATGGAATAAAATATACAGAAAATGTCCTTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3834818 72 -   4111199 ---------------AAAGGTTTACTATAATCTCTTCATAAGAAAACTATTGGAAAGATGGAATAAAATATACAGAAAATGTCCTTA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18223864 71 + 132174527 ---------------AAAGGTTCACTATAATCTCTTCATACAAAAACTAATGAACAGATGAAATAAAATATATAG-AAATGTCCTTA
i calJac3.chr10             I 1 C 0
s saiBol1.JH378108           49715097 71 +  54856640 ---------------AAAGGTTCACTATAATCTCTTCATACAAAAACTAATGGAAAGATGGAATAAAATATACAG-AAATGTCCTTA
i saiBol1.JH378108          I 1 C 0
s aotNan1.NW_018505940v1     39949597 71 +  42888418 ---------------AAAGGTTCACTATAATCTCTTCATACAAAAACTAATGGAAAGACGGAATAAAATATACAG-AAATGTCCTTA
i aotNan1.NW_018505940v1    I 104 C 0
s otoGar3.GL873548            9480882 86 -  19069880 ATAAAAAATAAAAAGAAAAGTTTACTGTAATTTCTTTATAAGAAACCTAATGGAAAGATGGAATTCAATACACAG-AAACATCCTCA
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=35966.000000
s hg38.chr15_KI270850v1_alt    299566 16 +    430880 ACAGGTAAATATTTAT
s gorGor5.CYUI01015556v1         6982 16 -   1709092 ACGGGTAAATATTTAT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107054233 16 - 169600520 ACAGGTAAATATTTAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65409709 16 + 171882078 ACAGGTAAATATTTAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        58669 16 +   6271500 ACAGGTAAATATTTAT
i macNem1.NW_012011056v1    C 0 C 0
s manLeu1.NW_012105520v1       388095 16 -   1458659 ACAGGTAAATATTTAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3834890 16 -   4111199 ACAGGTAAATATTTAT
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873548            9480968 16 -  19069880 ACAATTAAACATTTCT
i otoGar3.GL873548          C 0 I 84
e aotNan1.NW_018505940v1     39949668  0 +  42888418 C
e calJac3.chr10              18223935  0 + 132174527 C
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              20192727  0 -  24206276 C
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I
e saiBol1.JH378108           49715168  0 +  54856640 C

a score=132281.000000
s hg38.chr15_KI270850v1_alt    299582 75 +    430880 Ttttc-tttcttattattatactttaagttctggggtatatgtgcagaacgtgcaggtttgttgcataggtacaca
s gorGor5.CYUI01015556v1         6998 75 -   1709092 Ttttc-tttcttattattatactttaagttctggggtatatgtgcagaacgtgcaggtttgttgcataggtacaca
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107054249 76 - 169600520 TTttctttttttattattatactttaagttctggcgtacatgtgcagaacgtgcaggtttgttgcataggtacaca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65409725 76 + 171882078 TTttctttttttattattatactttaagttctggcgtacatgtgcagaacgtgcaggtttgttgcataggtacaca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        58685 76 +   6271500 TTttctttttttattattatactttaagttctggcgtacatgtgcagaacgtgcaggtttgttgcataggtacaca
i macNem1.NW_012011056v1    C 0 C 0
s manLeu1.NW_012105520v1       388111 76 -   1458659 TTttctttttttattattatactttaagttctggcgtacatgtgcagaacgtgcaggtttgttgcataggtacaca
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3834906 75 -   4111199 TTttctttttttattgttacactttaagttct-acatacatgtgcaaaatgtgcaggtttgttgcataggtacaca
i colAng1.NW_012116021v1    C 0 C 0
e aotNan1.NW_018505940v1     39949668  0 +  42888418 C
e calJac3.chr10              18223935  0 + 132174527 C
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9480984 84 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              20192727  0 -  24206276 C
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I
e saiBol1.JH378108           49715168  0 +  54856640 C

a score=269305.000000
s hg38.chr15_KI270850v1_alt    299657 157 +    430880 cgtgccatggtggtttgctgcacccatcaactcgtcatctacactaggtatttctcctaatgctatccctcccctagcc---cccca---acccccaacaggccccagtgtgtgatgttcccccctccctgtgtccgtgtgttctcactgtt------------caactc----------ccact---
s gorGor5.CYUI01015556v1         7073 156 -   1709092 cgtgccatggtggtttgctgcacccatcagctcgtcatctacactaggtatttctcctaatgctatccctcccctagcc---cccca---acccccaacaggccccagtgtgtgatgttccccc-tccctgtgtccgtgtgttctcactgtt------------caactc----------ccact---
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107054325 153 - 169600520 cgtgccacagtggtttgctgcacccatcaacttgtcatctacactaggtatttctcctaatgctatcccgcccctagcc---ccaca---ccccgcaacaggccccagtgtgtgatgttcccc--tc--tgtgtctatgtgttctcactgtt------------caactc----------ccact---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65409801 153 + 171882078 cgtgccacagtggtttgctgcacccatcaacttgtcatctacactaggtatttctcctaatgctatcccgcccctagcc---ccaca---ccccgcaacaggccccagtgtgtgatgttcccc--tc--tgtgtccatgtgttctcactgtt------------caactc----------ccact---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        58761 154 +   6271500 cgtgccacagtggtttgctgcacccatcaacttgtcatctatattaggtatttctcctaatgctatccctcccctagcc---cccaa---cccc-caacaggccccagtgtgtgatgttcccc--tctgtgtgtccatgtgttctcattgtt------------caactc----------ccact---
i macNem1.NW_012011056v1    C 0 C 0
s manLeu1.NW_012105520v1       388187 155 -   1458659 cgtgccacagtggtttgctgcacccatcaacttgtcatctacactaggtatttctcctaatgctatcccgcccctagcc---ccaca---ccccacaacaggccccagtgtgtgatgttcccc--tctgtgtgtccatgtgttctcattgtt------------caactc----------ccact---
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3834981 155 -   4111199 cgcgccacggtggtttgctgcacccatcaacttgtcatctacattaggtatttctcctaatgctatccctcccctagcc---cccca---acccccaacaggccccagtgtgtgatgttcccc--tctgtgtgtccatgtgttctcattgtt------------caactc----------ccact---
i colAng1.NW_012116021v1    C 0 C 0
s otoGar3.GL873548            9481068 180 -  19069880 catgccatcacagctcacagcaacctaaaactcgtggtct----taagcgattctcttgcctcagcctcccaaatagctggactacaggcacccatcacaatgcccagc-tgttttgttttc---tttctgtagttgtctgtttctgttgttgtttagcaggcccaggccgggtttgaatccaccagc
i otoGar3.GL873548          I 84 C 0
e aotNan1.NW_018505940v1     39949668   0 +  42888418 C
e calJac3.chr10              18223935   0 + 132174527 C
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e chlSab2.chr29              20192727   0 -  24206276 C
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I
e saiBol1.JH378108           49715168   0 +  54856640 C

a score=798874.000000
s hg38.chr15_KI270850v1_alt    299814 166 +    430880 ACAGGTAAATATTTCTAGAA---------------TGTATCTACTCCATCAGCTAGTGT-AAGTATTCTAAACTGTGCTAGTATAGCTGCTTTAAATCACTGCTTTCTTCTGCAAATGGTGGCACCTTT-AAAGTGTTATCTTGAAGGGGAAGTGAGTGATTTGCTCATGTCTC--TACTGAACT
s gorGor5.CYUI01015556v1         7229 167 -   1709092 ACAGGTAAATATTTCTAGAA---------------TGTATCTACTCCATCAGGTAGTGTTAAGTATTCTAAACTGTGCTAGTATAGCTGCTTTAAATCACTGCTTTCTTCTGCAAATGGTGGCACCTTT-AAAGTGTTATCTTGAAGGGGAAGTGAGTGATTTGCTCATGTCTC--TACTGAACT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107054478 168 - 169600520 ACAGGTAAATATTTCTAGAA---------------TGTATCTACTCCATCGGGTGCTGT-AAGTATTCTAAACTATGCTGGTATAGCTGCTTTAAATCACTGCTTTCTTCTGTAAATGGTGGCAGGTTT-AAAGTGTTATCTTGAAGGGGAAGTGAGTGATTTGCTCATGTCTCTGTACTGAACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65409954 168 + 171882078 ACAGGTAAATATTTCTAGAA---------------TGTATCTACTCCATAGGGTACTGT-AAGTATTCTAAACTGTGCTGGTATAGCTGCTTTAAATCACTGTTTTCTTCTGTAAATGGTGGCAGGTTT-AAAGTGTTATCTTGAAGGGGAAGTGAGTGATTTGCTCATGTCTCTGTACTGAACC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        58915 168 +   6271500 ACAGGTAAATATTTCTAGAA---------------TGTATCTACTCCATCAGGTACTGT-AAGTATTCTAAACTGTGCTGGTATAGCCACTTTAAATCACTGCTTTCTTCTGTAAATGGTGGCACCTTT-AAAGTGTTATCTTGAAGGGGAAGTGAGTGATTTGCTTATGTCTCTGTACTGAACC
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              20192727 168 -  24206276 ACAGGTAAATATTTCTAGAA---------------TGTATCTATTCCATCTGGTACTAT-AAGTATTCTAAGCTTTGCTAATATAACTGATTTAAATCACAGCTTTCTTCTGTAAATGGTGGTACCTTT-AAAGTGTTATCTTGAAGGGGAAGTGAGTGATTTGCTCATGTCTCTGTACTGAACT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       388342 168 -   1458659 ACAGGTAAATATTTCTAGAA---------------TGTATCTACTCCATCAGGTACTGT-AAGTATTCTAAACTGTGCTGGTATAGCTGCTTTAAATCACTGTTTTCTTCTGTAAATGGTGGCAGGTTT-AAAGTGTTATCTTGAAGGGGAAGTGAGTGATTTGCTCATGTCTCTGTACTGAACC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3835136 168 -   4111199 ACAGGTAAATATTTCTAGAA---------------TGTATCTACTCCATCGGGTACTGT-AAGTATTCTAAACTGTGCTGGTATAGCCGCTTTAAATCACTGCTTTCTTCTGTAAATGGTGGCACCTTT-AAAGTGTTATCTTGAAGGGGAAGTGAGTGATTTGCTCATGTCTCTGTACTGAACC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18223935 168 + 132174527 ACAGATAAGTATTTCTAGAA---------------TGTATCTACTCCATCTCGTACTGT-AAGTATTCTAAACTGTACTAGTATAACTGATTTAAATCGCTGCTTTTTTCTGTAAACGGTGGCACCTTT-AAAGTGTTATCTTGAAAGGGAAAGAAGTGACTCGCTCATGTCTATGTACTGAACT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49715168 169 +  54856640 ACAGGTAAATATTTCTAGAA---------------TGTATCTACTCCAGCTGGTACTGT-AAATATTCTAAACTGTGCTAGCATAACTGATTTAAATCACTGCTTTTTTCTGTAAACGGTGGCACCTTTAAAAGTGTTACCTTGAAAGGGAAGGGAGTGACTCACTCATGTCTCTGTACTGAACT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39949668 168 +  42888418 ACAGGTAAATATTTCTAGAA---------------TATATCTACTCCAGATGGTACTGT-AAGTATTCTAAACTGTGCTAGTATAACTGATTTAAATCACTGCTCTTTTCTGTAAACGGTGGCACCTTT-ACACTGTTATCTTGAAAGGGAAGGGAGTGACTTGCTCATGTCTCTGTACTGAACT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9481248 181 -  19069880 cccagtgcatgtggctggcaccctagccgctcagctataggagcccagccTGGTACTGT-ACGTATTCTAAACTGAGATGGTACA-CTGATTTATATCACTGCTTCCTTCCGTAAATGGTGGCATCTAC-AAAGAGGGA-CTGGAAAGGGAAGTGAGTGATTTGCTCAAATCTCAATATTACACT
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        51736 2445 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=6038140.000000
s hg38.chr15_KI270850v1_alt    299980 1126 +    430880 --AACACTGTTAACACCCAGTCCAGTTCTACCTTAAACAAGTCGGAGAAATACAGACATAATCCATACTTGTTATTTGTCAAGACTAAGGT--AAAATAAGG----AAAGTTGGAACTCACTC--ATATCCTCTTATGACTGATGTACTGAAAACAATCCATCTCTCACCATTTCCTAAATAGCATAGTCAC--AAAGAGCTCTACCCTACCAAG-TACTCTGCAAGTCCCACTCTCAAAGGAAGACTCACAGGTGACTGAGAAGATAAATTTGCTATTGTTTCCATTATCCTTCAGTTCATCTGACACCTTTGAAGAAATGCATTTGGATAAGACTCACAAGTCTCAGGGCCCCTTCTTTATGAAAGAAATAGCTAAGCCTCCATACTCA--GAAGCATCAGACTTTTCAGAATGC------TTAAGTCATGTAAAAACGTATCAAAATTATTATCATtacagctaccaggaaatagctacctactccatgttagatactgcagttaagtatctcac--acagtttcactgattcctaacaacactgcaaagcatgttactaacccttaaggagtaggaagctgaagctctgagaggctatg---------caactactcaatggaaatgtggggatgtgaactc-----tacctagctcc-aaagggcgtacttttttcTAAAATTTCTAA---TTTTTTTCCAATTTCACAATGGAGGCAGAGTTTTCACT-----------ACAATTTTAATAATTTCACCAgctgggtggggtggctcacgcctgtaattccagtactgtgggaggctgaggtgggaagacggcttgggtcccgg----ggagacaactgggcaacagtgaagattc-tgactct--aaaaaaaataagaaTTTCACCAAAA-------GGG-GG-GACAGATTTCTAAATCGGAATCTCTTGTTAAAATCCTTAGAGCACTAGTTAAGCCCCACTTCTTT--TCAAAAAATAACCGACAGA--------TTAAAAAAAAGGTTAGAAATCCTTTTAAAGTAAATTTCATCAGAGATCTGCAAGTGAATTGTCATTTTGGACAAGTCCCCAGAGTTGGTGGCCCTCTCCTGTGTACACCAGCTACCACTAGGCAGTA-AAAGTAatttacccaattcaaacacataccgtgcctgcactatgttaagac----cactggcaaag
s gorGor5.CYUI01015556v1         7396 1123 -   1709092 --AACACTGTTAACACCCAGTCCAGTTCTACCTTAAACAAGTCTGAGAAATACAGACATAATCCATACTTGTTATTTGTCAAGACTAAGGT--AAAATAAGG----AAAGTTGGAACTAACTC--ATATCCTCTTATGACTGAGGTACTGAAAACAATCCATCTCTCACCATTTCCTAAACAGCATAGTCAC--AAAGAGCTCTACCCTACCAAG-TACTCTGCAAGTCCCACTCTCAAAGGAAGACTCACAGGTGACTGAGAAGATAAATTTGCTATTGTTTCCATTATCCTTCAGTTCATCTGACACCTCTGAAGAAATGCATTTGGATAAGACTCACAAGTCTCAGGGCCCCTTCTTTATGAAAGAAATAGCTAAGCCTCCATACTCA--GAAGCATCAGACTTTTCAGAATGC------TTAAGTCATGTAAAAAGGTATCAAAATTATTATCATtacagctaccaggaaatagccacctactccatgttagatactgcagttaagtatctcac--acagtttcactgattcctaacaacactgcaaagcatgttactaacccttaaggagtaggaagctgaagctctgagaggctatg---------caactactcaatggaaatgtggggatctgaactc-----tacctagctcc-aaagggcgtacttttttcTAAAATTTCTAA---TTTTTTTCCAATTTCACAATGGAGGCAGAGTTTTCACT-----------ACAATTTTAATAATTTCACCAgctgggtggggtggctcacgcctgtaattccaatactgtgggaggctgaggtgggaggacggcttgggtcccgg----ggagacaattgggcaacagtgaagattc-cgactct--aaaaaa--taataaTTTCACCAAAA-------GGG-GG--ACAGATTTCTAAATCGGAATCTCTTGTTAAAATCCTTAGGGCACCAGTTAAGCCCCACTTCTTT--TCAAAAAATAACCGACAGA--------TTAAAAAAAAGGTTAGAAATCCTTTTAAAGTAAATTTCATCAGAGATCTGCAAGTGAACTGTCATTTTGGACAAGTCCCCAGAGTTGGCGGCCCTCTCCTGTGTACACCAGCTACCACTAGGCAGTA-AAAGTAatttacccaattcaaacacataccgtgcctgcactatgttaagac----cactggcaaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107054646 1120 - 169600520 --AACACTGTTAACACCCAGTCCAGTTCTACCTTAAACAAGTCTGAGAAATACAGACATAATCCACACTTGTTATTTGTCAAGACTAAGGT--AAAATAAAG----AAAGTTGGAAGTACCTC--ATAGCCTCTTAGGACTGATGTACCGAAAACAATCCATCTCTCACCATTTCCTAAATACCATAGTCAC--AAAGAGCTCTACCCCACCAAG-CACTCTGCGAGTCTCACTCTCAAAGGAAGACTCACAGGTGACTGAGAAGATAAATTCGCTATTGTTTCCATTATCCTTCAGTTTACATG--ACCT---AAGAAATGCATTCCTATAAGACTCACAAGTCTCAGGGCCCCTTCTTTATGAAAGAAATAGCTAAGCCTCTATACTCA--GAAGCATCAGACTTTTAAGAAACC------TTAAGTCATGTAAAAACGTATCAAAATTATTATCATtacagctaccaggaaatagctacctacttcatgttaaatactgaagttaagtacctcac----agtttcattcatccctaaaaactctgcaaagcatgttactaacctttatggagtaggaaactgaagctctgagagactgtg---------caactagtcaatggaaatgtggggatctgaactc-----tacctagctcc-aaagggtgtacgtttttctaAAATGTCTAA---TTTTTTTCCAATTTCACAATGGAGGGAGAGCTGTCACT-----------ACAATTTTAATAATTTCACCAgctgggtgggatggctcaggcctgtaattccaacactgtgggaggctgaggtgggaggacgggttgggttcccg----gcagacaactgggaaacagtg-agattc-cgactct--aaaaaa-aTAATAGTTTCACCAAAA-------GGG-GGGGACGGATTTCTAAATCGGAATCTCTTGTTGAAATCCTTTGAGCACCAGTTAAGCCCCACTTCTTTAAATAAGTAATAACCGACAGA-TTTTTTTTTTTAA-----GTTAGAAATCCTTTTAAAGTAAATTTCATCACAGATCTGCAAGTGAACTGTCATTTTGGACAAGTCTCCAGAGTTAGTGGCTCTTTCCTGTGCACACTAGCTACCACTAGGCAGTA-AAAATAATTTACCCAATTCAAACACATACTGTGCCTGCAC--TGTTAAGAC----TACTGGCAAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65410122 1120 + 171882078 --AACACTGTTAACACCCAGTCCAGTTCTACCTTAAACAAGTCTGAGAAATACAGACATAATCCACACTTGTTATTTGTCAAGACTAAGGT--AAAATAAAG----AAAGTTGGAAGTACCTC--ATAGCCTCTTAGGACTGATGTACCGAAAACAATCCATCTCTCACCATTTCCTAAATACCATAGTCAC--AAAGAGCTCTACCCCACCAAG-CACTCTGCGAGTCTCACTCTCAAAGGAAGACTCACAGGTGACTGAGAAGATAAATTCGCTATTGTTTCCATTATCCTTCAGTTTACATG--ACCT---AAGAAATGCATTCCTATAAGACTCACAAGTCTCAGGGCCCCTTCTTTATGAAAGAAATAGCTAAGCCTCTATACTCA--GAAGCATCAGACTTTTAAGAAACC------TTAAGTCATGTAAAAACGTATCAAAATTATTATCATtacagctaccaggaaatagctacctacttcatgttaaatactgaagttaagtacctcac----agtttcattcatccctaaaaactctgcaaagcatgttactaacctttatggagtaggaaactgaagctctgagagactgtg---------caactagtcaatggaaatgtggggatctgaactc-----tacctagctcc-aaagggtgtacgtttttctaAAATGTCTAA---TTTTTTTCCAATTTCACAATGGAGGGAGAGTTGTCACT-----------ACAATTTTAATAATTTCACCAgctgggtgggatggctcaggcctgtaattccaacactgtgggaggctgaggtgggaggacgggttgggttcccg----gcagacaactgggaaacagtg-agattc-cgactct--aaaaaa-aTAATAGTTTCACCAAAA-------GGG-GGGGACGGATTTCTAAATCGGAATCTCTTGTTGAAATCCTTTGAGCACCAGTTAAGCCCCACTTCTTTAAATAAGTAATAACCGACAGA-TTTTTTTTTTTAA-----GTTAGAAATCCTTTTAAAGTAAATTTCATCACAGATCTGCAAGTGAACTGTCATTTTGGACAAGTCTCCAGAGTTAGTGGCTCTTTCCTGTGCACACTAGCTACCACTAGGCAGTA-AAAATAATTTACCCAATTCAAACACATACCGTGCCTGCAC--TGTTAAGAC----TACTGGCAAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        59083 1114 +   6271500 --AACACTGTTAACACCCAGTCCAGCTCTACCTTAAACAAGTCTGAGAAATACAGACATAATCCACACGTGTTACTTGTCAAGACTAAGGT--AAAAT--------AAAGTTGGAACTAACTC--ATATCCTCTTATGACTGATG-ACTGAAAACAATCCATCTCTCACCATTTCCTAAATACCATAGTCAC--AAAGAGCTCTACCCCACCTAG-CACTCTGCGAGTCTCACTCTCAAAGGAAGACTCACAGGTGACTGAGAAGATAAATTCGCTATTGTTTCCATTATCCTTCAGTTTACATG--ACCT---AAGAAATGCTTTACTATAAGACTAACAAGTCTCAGGGCCCCTTCTTTACAAAAGAAATAGCTAAGCCTCTATACTCA--GAAGCATCAGACTTTTAAGAATGC------TTAAGTCATGTAAAAACGTATCAAAATTATTATCATtacagctaccaggaaatagctacctacttcatgttaaatactgcagttaagtacctcac----agtttcattcatccctaaaaacactgcaaagcatgttaccaaccgttatggagtaggaaactgaagctctgagaggcgatg---------caactagtcaatggaaatgtggggatctgaactc-----tacctagctcc-aaagggtgtacgttttACTAAAATGTCTAA---TTTTTTTCCAATTTCACAATGGAGGGAGAGTTGTCACT-----------ACAATTTTAATAATTTCACCAgctgggtgggagggctcaggcctgtaattccaacactgtgggaggctgaggtgggaggacaggttgggttcccg----gcagacaactgggaaacagtg-agattc-cgactct--aaaaaa-aTAATAGTTTCACCAAAA-------GGG-GGGG-CGGATTTCTAAATCGGAATCTCTTGTTGAAATCCTTAGAGCACCAGTTAAGCCCCACTTCTTTAAATAAATAATAACCGACAGA-TTTTTTTTTTTAA-----GTTAGAAATCCTTTTAAAGTAAATTTTATCACAGATCTGCACGTGAATTGTCATTTTGGACAAGTCCCCAGAGTTAGTGGCTCTCTCCTGTGTACGATAGCTACCACTAGGCAGTA-AAAATAATTTACCCAATTCAAACACATACCGTGCCTGCAC--TGTTAAGAC----TACTGGCAAAg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        54181 1121 -   5160157 --AACACTGTTAACACCCAGTCCAGTTCTACCTTAAACAAGTCTGAGAAATACAGATATAATCCACACTTGTTATTTGTCAAGACTAAGGT--AAAATAAGG----AAAGCTGGAACTAACTC--ATATCCTCTTACGACTGATGTACTGAAAACAATCCATCTCTCACCATTTCCTAAATACCATAGTCAC--AGAGAGCTCTACCCCACCAAG-CCCTCTGCGAGTCCCACTCTCAAAGGAAGACTCACAGGTGACTGAGAAGATAAATTCGCTATTGTTTCCATTATCCTTCAGTTTACATG--ACCT---AAGAAATGCATTCCTATAAGACTCACAATTCTCAGGGCCCCTTCTTTATGAAAGAAATAGCTAAGCCTCTATACTCA--GAAGCATCAGACTTTTAAGAAAGC------TTAAGTCATGTAAAAACGTATCAAAATTATTATCATtacagctaccaggaaatagctacctacttcatgttaaatactgaagttaagtacctcac----agtttcattcatccctaaaaactctgcaaagcatgttactaacccttatggagtaggaaactgaagctctgagagactatg---------caactagtcaatggaaatgtggggatctgaactc-----tacctagctcc-aaagggtgtacgtttttctaAAATGTCTAA---TTTTTTTCCAATTTCACAATGGAGGGAGAGTTGTCACT-----------ACAATTTTAATAATTTCACCAgctgggtgggatggctcaggcctgtaattccaacactgtgggaggctgaggtgggaggacaggttgggttcccg----gcagacaactgggaaacagtg-agattc-cgactct--aaaaaa-aTAATAGTTTCACCAAAA-------GGG-GGGGACGGATTTCTAAATCTGAATCTCTTGTTGAAATCCTTAGAGCACCAGTTAAGCCCCACTTCTTTAAATAAATAATAACCGACAGATTTTTTTTTTTTAA-----GTTAGAAATCCTTTTAAAGTAAATTTCATCACAGATCTGCAAGTGAATTGTCATTTTGGACAAGTGCCCAGAGTTAGTGGCTCTCTCCTGTGCACACTAGCTACCACTAGGCAGTA-AAAATAATTTACCCAATTCAAACACATACCGTGCCTGCAC--TGTTAAGAC----TACTGGCAAAG
i cerAty1.NW_012001384v1    I 2445 C 0
s chlSab2.chr29              20192895 1119 -  24206276 --AACACTGTTAACACCCAGTCCAGTTCCACCTTAAACAAGTCTGACAAATACAGACATATTCCACACTTATTATTTGTCAAGACTAGGGT--AAAATAAAG----AAAATTGGAA----CAC--ATATCCTCTTATGACTGATGAACTGAAAACAATCCATCTCGCACTGTTTCCTAAATAACACAGTCAC--AAAGAGCTCTACCCCACCAAG-CACTCTGCAAGTCCCACTCTCAAAGGAAGACTCACAGGTGACTGAGAAGATAAACTCGCTATTGTTTCCATTATCCTTCAGTTCATCTGGCACCTTTGAAGAAACAGATTTAGATAAGACTCACAAGTCTCAAGGCCCCTTCTTTATGAAAGAATTAGCTAAGCCTCTATACTCA--GAAGCATCAGACTTTTAAGAATGC------TTAA-----GTAAAAATGTATCAAAATTATTCTCATGACagctaccaggaaatagctacttattccacgttagatactgcagttaagtacctcac--atagtttcactgatttctaagaacactgcaaagcatgttactaacccttacagagtaggaaactgaagctctgagaggctatg---------caactagtcaatggaaatgtggggatgtgaactc-----tacctagctcc-aaagggtgtacgttttTTTTAAATTTCTAA---TTTTTTTCCAATTTCACAAT----GGAGAGTTGTCACT-----------ACAATTTTAATAACTTCACCAgttgggtggggtggctcacatccgtaattcaaacactgtgggagactgaggtgggaggatggcttgggtccccg----ggagacaactgggaaacagtg-agattc-cgactct--aaaaaa-aTAATAATTTCACCAAAACGGGGGGAGG-GGGGGCAGATTTCTAAATCAGAATCTCTTGTTGAAATCCTTAGGGCACTAGTTAAGCCCCACTTCTTT--TCAAAAAATAACTGACAGA--------TTTAAAAAAAGGTTAGAAATTCTTTTAAAGTAAATTTCATCACAGATCTGCAAGTGAATTGTCATTTTGGACAAGTGCCCAGAGTTAGTGGCTCTCTCCTGTGCACACTAGCTACCACTAGGCAGTA-AAAATAatttacccaattcaaacacatactgtgcctgcgctatgttaagac----tactggcacac
i chlSab2.chr29             C 0 n 0
s manLeu1.NW_012105520v1       388510 1114 -   1458659 --AACACTGTTAACACCCAGTACAGTTCTACCTTAAACAAGTCTGAGAAATACAGATATAATCCACACTTGTTATTTGTCAAGACTAAGGT--AAAATAAAG----AAAGTTGGAACTACCTC--ATAGCCTCGTAGGACTGATGTACTGAAAACAATCCATCTCTCACCATTTCCTAAATACCATAGTCAC--AGAGAGCTCTACCCCACCAAG-CACTCTGCGAGTCCCACTCTCAAAGGAAGACTCACAGGTGACTGAGAAGATAAACTCGCTATTGTTTCCATTATCCTTCAGTTTACATG--ACCT---AAGAAATGCATTCCTATAAGACTCACAATTCTCAGGGCCCCTTCTTTATGAAAGAAATAGCTAAGCCTCTATACTCA--GAAGCATCAGACTTTTAAGAAAGC------TTAAGTCATGTAAAAACGTATCAAAATTATTATCATtacagctaccaggaaatagctacctacttcatgttaaatactgaagttaagtacctcac----agtttcattcatccctaaaaattctgcaaagcatgttactaacccttatggagtaggaaactgaagctctgagagactatg---------caactagtcaatggaaatgtggggatctgaactc-----tacctagctcc-aaagggtgtacgtttttctaAAATGTCTAA---TTTTTTTCCAATTTCACAATGGAGGGAGAGTTGTCACT-----------ACAATTTTAATAATTTCACCAgctgggtgggatggcttagtcctgtaattccaacactgtgggaggctgaggtgggaggacaggttgggttcccg----gcagacaactgggaaacagtg-agattc-cgactct--aaaaaa-ataaTAGTTTCACCAAAA-------AGG-GGGGACGGATTTCTAAATCGGAATCTCTTGTTGAAATCCTTAGAGCACCAGTTAAGCCCCACTTCTTTAAATAAATAATAACCGACAGA-TTTTTTTTTTAAA-----GTTAGAAATCCTTTT------AATTTCATCACAGATCTGCAAGTGAACTGTCATTTTGGACAAGTCTCCAGAGTTAGTGGCTCTCTCCTGTGCACACTAGCTACCACTAGGCAGTA-AAAATAATTTACCCAATTCAAACACATACCGTGCCTGCAC--TGTTAAGAC----TACTGGCAAAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3835304 1123 -   4111199 --AACACAGTTAACACCCAGTCCAGTTCTACCTTAAACAAGTCTGAGAAATACAGACATAATCCACACTTGTTATTTGTCAAGACTAAGGT--AAAATAAAG----AAAGTTGGAACTAACTC--ATATCCTCTTATGACTGATGTACTGAAAACAATCCATCTCTCACTATTTCCTAAATACCATAGTCAC--AAAGAGCTCTACCCCACCAAG-CACTCTGCGAGTCCCACTCTCAAAGGAAGACTCACAGGTGACTGAGAAGATAAACTCGCTATTGTTTCCATTATCCTTCAGTTTACATG--ACCT---AAGAAATGCATTACTATAAGACTCACAAGTCTCAGGGCCCCTTCTTTATGAAAGAAATAGCTAAGTCTCTATACTCA--GAAGCATCAGACTTTTAAGAATGC------TTAAGTCATGTAAAAACATATCAAAATTATTATCATtacagctaccaggaaatagctacctacttcatgttaaatactgcagttaagtacctcac----agtttcattcatccctaaaaacactgcaaagcatgttactaacccttatggagtaggaaactgaagctctgagaggctatg---------caactagtcaatggaaacgtggggatctgaactc-----tacctagctcc-aaagggtgtacgtttttctaAAATGTCTAA---TTTTTTTCCAATTTCACAATAGAGGGAGAGTTGTCACT-----------ACAATTTTAATAATTTCACCAgctgggtgggatggctcaggcctgtaattccaacactgtgggaggctgaggtgggaggatgggttgggttcccg----gcagacaactgggaaacactg-agattc-ctactct--aaaaaa-aTAATAATCTCACCAAAA---GGCCGGG-GGGGGGGGATTTCTAAATCGGAATCTCTTGTTGAAATCCTTAGAGCACTAGTTAAGCCCTACTTCTTTAAATAAATAATAACCGACAGA--TTTTTTTTAAAA-----GTTAGAAATCCTTTTAAAGTAAATTTCATCACAGATCTGCAAGTGAATTGTCATTCTGGACAAGTCCCCAGAGTTAGTGGCTCTCTCCTGAGTACGCTAGCTACCACTAGGCAGTA-AAAATAATTTACCCAATTCAAACACATACCGTGCCTGCAC--TGTTAAGAC----TACTGGCAAAg
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18224103 1147 + 132174527 --AACACTGTTAACATCCAGTCCAGTTCTACCTTAAACAAGTCTGAGAAATA--GACATAATCCATACTTATTACTTTTCAAGACTAAGGTTAAAAAAAAGGAAAAAAAGTTGGAACTAACTC--ATATCCTCTTATGACTGATATACTGAAAACAATCCATCTCTCACCGTTTTCTAAATACCACAGCCAC--AAAGAGCTCTACCCTACCAAGCCACTCTGCAAGTCCCACTCTCAAAGGAAGACTAACAGGTGACTGAGAAGATAAACTCACTACTGTTTCCATTATCCTTCAGTTCATCTGGCACCTTT-GAGAAATGCATTTGGATAAGACTCACCAGTCTCAGGGCCCCTTATTTATGGACGAAATCGCTAAACCTCTATACTTA--GAAGCATCAGAC--TTAAGAATGC------TTAAGTCATGTAAAAACGTATCACAATTATTATCATTACAGCTACGAGGAAATAGCTAcctacttcgtgttaggtactgtag-taaatacctcac--acagcttcatttattcctgagaacactgcaaagcatgtcactaacccttagggggtaggaaactgacgctctgacaggctatg---------caactggtcaatggaaatgtgcggatctgaactt-----tacctagctcc-aaagcatgtacttttttcTAAAACTTCTCATTTTTTTTTTCCAATTTCCCAATGGAGGGAGAGTTGTGACTAGATTTGTCCAACAATTTTAATAATTTCACCAgctgggtggggtggatcacgcctgtaattccaacactgtgggaggctgaggtgggaggatggcttgggtccaggagttagagaaagctgggaaacagtg-atactc-tggctctaaaaaaaa-aaaaTAATTTCACCCAAG-------GGGTGGGGTGGGATTTCTAAATCGGAATCTCTTGTTGAAATCCTTAGAGCACTAGTTAAGCCCCACTTCTTT--TCAAAAAAT----AACAGA-----TTTTTTAAA---AGGCTAAAAATCCTTTTAAAATACATTTCATTACAGAGCCCCAAGTTAACTGTCATTCTGAACAAGTCCCCAGAGTTAGTGGCTCCCTCCTGTGTACGCTAGCTACCACTAGGCAGTA-AAAATAATTTACCCAATTCAAATACATACTCTGCCTGCACTATGTTAAAACTCTTTACTGACAAAG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49715337 1142 +  54856640 --AACACTGTTAACATCCAGTCCAGTTCTACCTTAAACAAGTCTGAGAAATACGGACATAATCCATACTTATTATTTTTCAAGACTAAGGT--AAAAAAAGG----AAAGTTGGAACTAACTC--ATATCATCTTATGACTGATGTACTGAAAACAATCCATCTCTCACCGTTTCCTAAATACCACAGTCAC--AAAGAACTCTACCCTACCATGCCACTCTGCAAGTCCCACTCTCAAAGGAAGACTAACAGGTGACTGAAAAGATAAATTCACTATTGTTTCCATTATCCTTCAGTTCATCTGGCACCTTT-GAGAAATGCATTTGGATAAGACTCACAAGTCTCAGGGCCCCTTATTTATGGAAGAAATCGCTAAACCTCTATACTTA--GAAGCATCAGACTTTTAAGAATGC------TTAAGTCATGTAAAAACGTATCACAATTATTATCATTACAGCTACGAGGAAATAGCTAcctacttcgtgttaggtactgtag-taagtacctcacaaatagtttca-ttattcctgagaacactgcaaagcatgtcactaacccttaggaagtaggaaactgacgctctgacaggctatg---------taactggtcaatggaaatgtgtggatctgaactc-----cacttggctcc-aaagcgtgtgcttttttcTAAAATTTCTCA-CTTTTTTCCCCAATTTCCCAATGGAGGGAGAGTTGTGACTAGATTTGTCCAACAATTTTAATAATTTCACCAgctgggtggggtggctcacgcctgtaattccaacactgtgggaggctgaggtgggaggatggcttgggtccaggagttagagaccactgggaaacagtg-atactc-cggctct-aaaaaaG-ATAATAATTTCACCCAAG-------GG--CGGGTAGGATTTCTAAATCGAAATCTCTTGTTGAAATCCTTAGAGCACTAGTTAAGCCCCACTTCTTT--TCAAAAAATAACCAACAGA-----TTTTTTAAA---AGGTTAGAAATCCTTTTAAAATAAATTTCATCACAGAGCACCAAGTTAATTGTCATTTTGGACAAGTCCCCAGAGTTAGTGGCTCTCTCCTATGTAC----GCTACTACTAGGCAGTA-AAAATACTTTACCCAATTCAAATACATACTGTGCCTGTACTATGTTAAGACTCTTTACTGACAAAG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39949836 1151 +  42888418 --AACACTGTTAACATCCAGTCCAGTTCTACCTTAAACAAGTCTGAGAAATACAGACCTAATGCATACTTATTATTTTTCAAGACTAAAGT-AAAAAAAAGGAAAGAAAGTTGGAACTAACTC--ATATCCTCTTATGACTGATGTACTGAAAACAATCCAGCTCTCACCGCTTCCTAAATACCACAGTCACAAAAAGAGTTCTACCCTACCAAGTCACTCTGCAAGTCCGACTCTCCAAGGAAGACTAATAGGTGACTGGGAAGACAAATTCACTATTATTTCCATTATCCTTCAGTTCATCTGGCACCTTT-GAGAAATGCATTTGGATAAGACTCACACGTCTCAGGGCCCCTTATTTATGGAAGAAATCGCTAAACCTCTATACTTA--GAAGCATCACACTTTTAAGAATGC------TTAAGTCATGTAAAAA-GTATCACAATTATTATCATTACAGCTACAAGGAAATAGCTAcctacttcgtgttaggtactgtag-taagtacctcac--atagtttcatttattcctgagaacgctgcaaagcatgtcaccaacccttagggagtaggaaactgacgctctgacaggctatg---------caactggtcaatggaaatgtgcagatctgaactc-----tacctagctcc-aaagagtgtactttttGCTAAAATTTCTCATTTTTTTTTTCCAATTTCCCAATGGAGGGAGAATTGTGACTAGATTTGTCCAACAATTTTAATAATTTCACCAgctgggtggggtggctcacgcctgtaattccaacactgtgggaggctgaggtgggaggatggcttgggtccaggagttagagacaactgggaaatagtg-atactc-cggctctaaaaaaaa-aTAATAATTTCACCCAAG-------GTG-GGGGTGGGATTTCTAAATCGGAATCTCTTGTTGAAATACTTAGTGCACTAGTTAAGCCCCACTTCTTT--TCAAAAAATAACCAACAGA-----TTTTTAAAA---AGGTTAGAAATCCTTTTAAAACAAATTTCATCACAGAGCCCCAAGTTAATTGTCATTTTGGACAAGTCCCCAGAGTTAGTGGCTCTCTCCTATGTACGCTAGCTACCACTAGGCAGTA-AAAATAATTTACCCAATTCAAATACATACTGTGCCTGCACTATGTTAAGACTCCTTACT---AAAG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9481429  960 -  19069880 TACCCGGTGTTAACAGCCAGTCCAGTTCTATTGT----AAGTGTGAGAAAAACAGTCATAATCCATACTTGTTATTTTTCAAGACAAAGGT--AAACTAAGGGAA-AAAGTTGGAACTAACTCCAATATCCTATT-----CAAAGTACTGAAAACACCCCACCTTCCACTGTTTCCTACACACTACAATCAC----AGAGCTGTTCCCTAGCAAGCCCCTCTGCAAG-----------------------------------AAGATATAATCGC-ATTGTTTCTATTATCCTTCACTTCTTCTGGCACCTTT-AAAAAATGCATTTGGATAAG----ACAAGGGTCAGGACCCCTACTTGATGAAAAAAATAACTAAACCACTATACTCAATGAAGCATTAGACTTCGGGGAACACTTTCTTTTAAGCCATGTACAAAAGTACTAAAATTG---TCATTACATCTACCAGGAAACAGCCACCTACATAACGTTAGGTGGTGTAG-AAAGCACCCCCC--CTAGtttcatttattcctaagaacactgcaaagtatattactaaccctcatagagtagtaaactgaag--ctaagaggctaaggctcagacacaactaatgaatgaaaatgtggagatttgaactcaaatttacctagctccaaaagagtatactttcttctcaactgtgcta------cctcccAATTTC----------------------------------ACAATTT--------------------TGGAATG------------------------------GGCAGAGTTGTGAA-------TGGATTTGTC--------------------CAGCA-ATCTTCATGACTTC--ACTAAA----------------AAG-------AGG-GAGATTGGACTTCTCAATTAGAATCTCATTTTGAAACCCATGGAGCACTATTTAAACCCCATTTCTTT--TCAAGAAGTAATCAACAAA--------TAAAAAGAAGGGTTAGACATCCTTTTAAAGAAAATATCATCACAGATCTGCAGGTGAATTGTCACTTTGGGCAAGT-CCCAGAGTTAGCAACTCCCTCCTATGTGCA----CTACCACTAACTAGTAGAAAGCATTCCACCCAATTCAAACTGG----ATGCCCGCAC----CAAAG-----------------
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464    0 -   1040364 I
e canFam3.chr30               1743556    0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=1888349.000000
s hg38.chr15_KI270850v1_alt    301106 340 +    430880 agggtacaaa---------------------gttaaataaggtctatcacagccctcaaggagttaaaggactagaggag---TCCATTTATA-----GTATAG-------------------------------TATGTGTGCAGTTACCATTTAGTCAAGGCAA-ACGAACTGTGAGAAATCCTACAACAATAG-TACCTACAGTATAACATGCCATCACCGCCCACAGAAGGAAAGCAACTGGTGCCCTCGTCACGTTATGTTGT---TAGTACTTGCTTACATGATG--TCCCTCCCTGACAATCCCTTCCAACCTCTGTCAGC----CTCCTTCCCcacaatcacacacacacacaaaaccacacTGCCAGGAAGGGAAGCCATTGAGTGAGTATTGTGAATCCTA
s gorGor5.CYUI01015556v1         8519 343 -   1709092 agggtacaaa---------------------gttaaataaggtctatcacagccctcaaggagttaaaggactagaggaggagTCCATTTATA-----GTATAG-------------------------------TATGTGTGCAGTTACCATTTAGTCAAGGCAA-AAGAAGTGTGAGAAATCCTACAACAATAG-TACCTACAGTATAACATGCCATCACCGCCCACAGAAGGAAAGCAACTGGTGCCCTCGTCACGTTATGTTGT---TAGTACTTGCTTACATGATG--TCCCTCCCTGACAATCCCTTCCAACCTCTGTCAAC----CTCCTTCCCcacaatcacacacacacacaaaaccacacTGCCAGGAAGGGAAGCCATTGAGTGAGTATTGTGAATCCTA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107055766 343 - 169600520 AGGGTACAAA---------------------GCTAAGTAAGGTCTATCACAGCCCTCAAGGAGTT-AAGGACTAGAGGAGGAGTCCATTTATA-----GTACAG-------------------------------TATGTGTGTAGTTACCATTTAGTCAAGGCAA-ACGAAGTGTAAGAAATCCTAAAACAATAG-TACCTACAGGATAACATGCCATCACCGCCCAGAGAAGGAAAGCAACTGGTGCACTCGTCACGTTATGTTGTCAGCAGTACTTGCTTACACTGTG--TCCCTCCCTGACAATCCCTTCCAAC--CTGTCAACCAACCTCCTTCCCCACAAT----CACACACACACCACCACACAACCAGGAAGGGAAGCCATCGAGCGAGTATTGTGAATCCTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65411242 341 + 171882078 AGGGTACAAA---------------------GCTAAGTAAGGTCTATCACAGCACTCAAGGAGTT-AAGGACTAGAGGAGGAGTCCATTTATA-----GTACAG-------------------------------TATGTGTGCAGTTACCATTTAGTCAAGGCAA-ACGAAGTGTAAGAAATCCTAAAACAATAG-TACCTACAGGATAACATGCCATCACCGCCCAGAGAAGGAAAGCAACTGGTGCACTCGTCACGTTATGTTGTCAGCAGTACTTGCTTACATTGTG--TCCCTCCCTGACAATCCCTTCCAAC--CTGTCAACCAACCTCCTTCCCCACAAT------CACACACACAACCACACAACCAGGAAGGGAAGCCATCGAGCGAGTATTGTGAATCCTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        60197 344 +   6271500 agggtacaaa---------------------gctaagtaaggtctatcacagccctcaaggagtt-aaggactagaggaggagTCCATTTATA-----GTACAG-------------------------------TATGTGTGCAGTTACTATTTAGTCAAGGCAA-ACGAAGTGTGAGAAATCCTAAAACAATAG-TACCTACAAGATAACATGCCATCTCCGCCCAGAGAAGGAAAGCAACTGGTGCACTCGTTAAGTTATGTTGTAAACAGTACTGGCTTACATTGTG--TCCCTCCCTGACAATCCCTTCCAAC--CTGTCAACCAACCTCCTTCCCcacaat--cacacacacacacaaccacacaACCAGGAAGGGAAGCCATCAAGCGAGTATTGTGAATCCT-
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        55302 343 -   5160157 AGGGTACAAA---------------------GCTTAGTAAGGTCTATCACAGCACTCAAGGAGTT-AAGGACTAGAGGAGGAGTCCATTTATA-----GTACAG-------------------------------TATGTGTGCAGTTACCATTTAGTCAAGGCAA-ACGAAGTGTGAGAAATCCTAAAACAATAG-TACCTACAGGGTAACATGTCATCACCGCCCAGAGAAGGAAAGCAACTGGTGCACTCGTCACGTTATGTTGTCAGCAGTACTTGCTTACATTGTG--TCCCTCCCTGACAATCCCTTCCAAC--CTGTCAACCAACCTCCTTCCCCACAAT----CACACACACACAACCACACAACCAGGAAGGGAAGCCATCGAGCGAGTATTGTGAATCCTA
i cerAty1.NW_012001384v1    C 0 I 890
s chlSab2.chr29               3891943 343 +  24206276 AGGGTACAAA---------------------GCTAAGTAAGGTCTATCACAGCACTCAAGGAGTT-AAGGACTAGAGGAGGAGTCCATTTACA-----GTACAG-------------------------------TATGTGTGCAGTTACCATTTAGTCAAGGCAA-ACGAAGTGTGAGAAATCCTAAAACAATAG-TACCTACAGGATAACATGCCATCACCGCCCAGAGAAGGAAAGCAACTGGTGCACTCGTCACGTTATGTTGTCAGCAGTACTGGCTTACATTGTG--TCCCTCCCTGGCAATCCCTTCCAACCTCTGTCAACCAACCTCCTTCCCCACAA------GCACACACACAACCACACAACCAGGAAGGGAAGCCATCGAGCGAGTATTGTGAATCCTA
i chlSab2.chr29             I 10 C 0
s manLeu1.NW_012105520v1       389624 345 -   1458659 AGGGTACAAA---------------------GCTAAGTAAGGTCTATCACAGCACTCAAGGAGTT-AAGAACTAGAGGAGGAGTCCATTTATA-----GTACAG-------------------------------TATGTGTGCAGTTACCATTTAGTCAAGGCAA-ACGAAGTGTGAGAAATCCTAAAACAATAG-TACCTACAGGATAACATGCCATCACCGCCCAGAGAAGGAAAGCAACTGGTGCACTCGTCACGTTATGTTGTCAGCAGTACTTGCTTACATTGTG--TCCCTCCCTGACAATCCCTTCCAACCTCTGTCAACCAACCTCCTTCCCCACAAT----CACACACACACAACCACACAACCAGGAAGGGAAGCCATCGAGCGAGTATTGTGAATCCTA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3836427 342 -   4111199 agggtacaaa---------------------gctaagtaaggtctatcacagccctcaaggagtt-aaggactagaggaggagTCCATTTATA-----GTACAG-------------------------------TATGTGTGCAGTTACCATTTAGTCAAGGCAA-ACCAAGTGTAAGAAATCCTAAAACAATAG-TACCTACAGGATAACATGCCATCACCGCCCAGAGAAGGAAAGCAACTGGTGCACTTATCAAGTTATGTTATAAACAGTGCTTGCTTACATTGTG--TCCCTCCCTGACAATCCCTTCCAAC--CTGTCAACCAA-CTCCTTCCCCACAAT----CACACACACATAACCACACAACCAGGAAGGGAAGCCATCGAGCGAGTACTGTGAATCCTA
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18225250 337 + 132174527 AGGGTACAAA---------------------GCTAAATAAGGTCTATCACAGACCTCAAGGAGTTAAAGGACTAGAG---GAGTCCATTT-----------CAG-------------------------------TATGTGTGCAGTTACCATTTAGTCAAGGCAG-ATGAAGTGTGAGAAATCCTAAAACAATTG-TATCTACAGTGTAACACGCCATCACAGCCCAGGGAAGGAAAGCAACTGGTGTACTTGTGACGTTATGCTGTAAGTAGTACTTGTTTACATTATGTCTCCCTCCCTGACAATCCCTTCTAACCTCTGTCAAC----CTCCTCCTCCACAAT--CACACACACACACAACCACAAAACCAGGAAGGAAGGCCATCGAGCGAATATTCTGAATTCTA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49716479 331 +  54856640 AGGGTATAAA---------------------GCTAAATAAGGTCTATTACAGACCTC---------AAGGACTAGAG---GAGTCCATTT----------ACAC-------------------------------TATGTGTGCAGTTACCATTTAGTCAAGGCAG-ATGAAGTGTGAGAAATCCTAAAACAATTA-TATCTACAGTATAACACGCCATCACAGCCCAGAGAAGGAAAGCAACTGGTGTACTCGAGACGTTATGTTTTAAGTAGTACTTGTTTACATTATGTCTCCCTTCCTGACAATCCCTTCCAACCTCTGTCAAC----CCCCTTCTCCACAATCACACACACACACACAACCACACAACCAGGAAGGAAAGCCATCGAGCGAGTATTCTGAATCCTA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39950987 362 +  42888418 AGAGTACAAAGCTAAATAAGGTCTATCACAGGCTAAATAAGGTCTATCACAGACCTTAAGGAGTTAAAGGACTAGAGGAAGAGTCCATTT----------ACAG-------------------------------TATGTGTGCAGTTACCATTTAGTCGAGGCAG-ATGAAGTGTGAGAAATCCTAAAACAATTG-TATCTACAGTATAACACGCCATCACAACCCAGAGAAGGAAAGCAACTGGTGTACTCATGACGTTATGTTGTTAGTAGTACTTGTTTACATTATGTCTCCCTCCCTGACAATCCCTTCCAACCTCTGTCAGC----CTCCTCCTCcacaat--cacacacacacacaaccacacaACCAGGAAGGGAAGCCATCGAGCGAGTATTCTGAATCCTA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9482389 361 -  19069880 ------CTAA---------------------GTCAAATAAGGCTCATCACACCTCTCAAGGAATTAAAAGACTAGAG---GAGTCCAATCATACATATGTACAAATGTACCAAATTATCATTACATCTACCAGGCAATGTGTACAGTTACCACTTAATCAGAGAAATAAGAAGTGAAAAAAATCCTAAAACAAAAGTTATGTGCAGGATAACATGCTATCACAGCCCAGAGAAGGAAAACAACTTGTGTACTTGTCTCCTTATGTACTAAGTAGCATTTGTTTACATTATG--TTCCTCCCTGACAACCCTTTCCAATCTCTGTCAAC----CTCCCTCCCCACAAT----CCCACATACA----------ACCAGAAAAGGAAGCTATAGAACAAGTATTGTCAGTCCCA
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=3884251.000000
s hg38.chr15_KI270850v1_alt    301446 849 +    430880 CAAGTGGCTCTGTAGTTTAAAAGGGCAATGCCTGTGCCTGAAGAAAATTTGTCTTTAGCTTCATCAGGTGAAGAAAATTGGTTTTATAACACAAGGCCC---ACCAAACCAGAAAAGCCCAGGAACGCTTCTCCACAGGACTCACTTAGCACGAGAAATCACTCAGAGCAAAATGACGCACACAG-TATTTGTCAAATTTTTCTTTTTCATTTAGCAGAAGGTAAGGTAAAGGACTAC---AACTGAAGTTAA---TAAATGACACTCTAGCCATTTTGATCATTTGTCACTATAAATGATAGACATTTAAGCTAGTTCCATCTGGGGAAGTGAAACAGAATCATGTTCATATAATAAGCCAGACGAACCAAATTCAGTGGAATACGTGCACCCAAAACTGGACCAGACTTGTACTTAATGCAGCCTGCAAATCCCCAAGAGTCCACGACAGAATACAAGAACAGTAACACTGGTTTATCTCAACTCATCTTAGCTCCCTCACAAACTTGCCAATAATGACCTTTCAAGAACTGCACCGTTGGTCCTCATCTGGGCAATCCCGTGGCTTAGAAAAACTGAATAAAGTGCTTCTTCGAAAAATAAAACAA---TGC----GGGG---AGG-GGGG-------AGTAGTAACAA-------A---------AAAAAA-GGCACACT--GGTTTTTACTGTA-------CTGAAGCAATAAAT-TCTCCAACTAACTTCATTAATGAGTATC--AGCAAAGAATGAACACCAAAATACCGCTCAATCCAACTTTCATCGTGAATTCTTGAATTCACAGTAGGATC------ATTAAATGTGACGGTATCACTCTGCTATAAAAAC---TATTTCCAAAACAAAAC-AAACCTATCTACCCCCTTTCTTGATTTaaaa----aa
s gorGor5.CYUI01015556v1         8862 846 -   1709092 CAAGTGGCTCTGTAGTTTAAAAGGGCAATGCCTGTGCCTGAAGAAAATTTGTCTTTAGCTTCATCAGGTGAAGAAAATTGGTTTTATAACACAAGGCCC---ACCAAACCAGAAAAGCCCAGGAACGCTTCTCCACAGGACTCACTTAGCACGAGAAATCACTCAGAGCAAACTGACGCACACAG-TATTTGTCAAATTTTTCTTTTTCATTTAGCAGAAGGTAAGGTAAAGGACTAC---AACTGAAGTTAA---TAAATGACACTCTAGCCATTTTGATCATTTGTCACTATAA-TGATAGACATTTAAGCTAGTTCCATCTGCGGAAGTGAAACAGAATCATGTTCATATAATAAGCCAGACGAACCAAATTCAGTGGAATACGTGCACCCAAAACTGGACCAGACTTGTACTTAATGCAGCCTGCAAATCCCCAAGAGTCCACGACAGAATACAAGAACAGTAACACTGGTTTATCTCAACTCATCTTAGCTCCCTCACAAACTTGC-AATAATGACCTTTCAAGAACTGCACCGTTTGTCCTCATCTGGGCAATCCCGTGGCTTAGAAAAACTGAATAAAGTGCTTCTTCGAAAAATAAAACAA---TGC----GGGG---AGG-GGG--------AGTAGTAACAA-------A---------AAAAAAAGGCACACT--GGTTTTTACTGTA-------CTGAAGCAATAAAC-TCTCCAACTAACTTCATTAATGAGTATC--AGCAAAGAATGAACACCAAAATACCGCTCAATCCAACTTTCATCGTGAATTCTTGAATTCACAGTAGGATC------ATTAAATGTGACGGTATCACTCTCCTATAAAAAC---TATTTCCAAAACAAAAC-AAACCTATCTACCCC-TTTCTTGATTTaaaa----aa
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107056109 857 - 169600520 AAACTGGCTCTGTAGTTTTAAAGTGCAACGCCTGTGCCTGAAGAAAATTTGTCTTTAGCTTCATCAGGTGAAGAAAATCGGTTTTATAACACAAGGCCC---CCCAAACCAGAAAAGCCCAGGAACGCTTCTCCACATGACTTACTTAGTATGAGAAATCACCCACAGAAAGCTGACATACACAGTTATTTCTCAAATTTTTCTTTTTCATTTAGCAG-----ATGGTAAAGGAACAC---AACTAAAGTTAACAGTAAATGACACTCTGGCTATTTTGTTCATTTGTCACTATGAATGACAGACATTTAAGCTAGTTCCATCTGGGGAACTGAAACAGAATCATGTTCATATAATAAGCCACACGAACCAAATTCAGTGGAATACGTGCACCCAAAACTGGACCAGACTTGTACTTAATGCAGCCTGCAAATCCCCAAGAGTCCACGACGGAATACAAGAACAGTAACAATGATTTATCTCAACTGATCTTAGCTTCTTCACAAACTTGCCAATAACCACCTTTCAAGAACTGCACCGTTTGTCCTCATCTGGGCAATCCAATGGTTTAGAAAAACTGAAACAACTGCTTCTTCGAAAATTAAAACAA---TGC----GGGG---GGT-GGGGG--GGGAAGTAGTaacaa-------acaaacaaacaaaaaa-GGCACACT--GGTTTTTACTCTA-------CCGAAGCAATCAAC-TCTCCAAATAACTTCATTAATGAGTGTC--AGCAAAGAATGAACACCAAAATACCGCTCAATCTAACTTCCATCGTGAATTCCTGAGTTCACAGTAGGAGC------ATTAAATGTGACGGTATCACTCTGCTATAAGAAC---CATTTC-----CAAAAC-AAACCTATCTACCCCCTTTCTTGAGTTTAAA----AA
i rheMac8.chr7              C 0 I 6
s macFas5.chr7               65411583 857 + 171882078 AAACTGGCTCTGTAGTTTAAAAGTGCAACGCCTGTGCCTGAAGAAAATTTGTCTTTAGCTTCATCAGGTGAAGAAAATCGGTTTTATAACACAAGGCCC---ACCAAACCAGAAAAGCCCAGGAACGCTTCTCCACATGACTCACTTAGCATGAGAAATCACCCACAGCAAACTGACATACACAGTTATTTCTCAAATTTTTCTTTTTCATTTAGCAG-----ATGGTAAAGGAACAC---AACTGAAGTTAACAGTAAATGACACTCTGGCTATTTTGTTCATTTGTCACTATGAATGACAGACATTTAAGCTAGTTCCATCTGGGGAACTGAAACAGAATCATGTTCATATCATAAGCCACACGAACCAAATTCAGTGGAATACGTGCACCCAAAACTGGACCAGACTTGTACTTAATGCAGCCTGCAAATCCCCAAGAGTCCACGACGGAATACAAGAACAGTAACAATGATTTATCTCAACTGATCTTAGCTTCTTCACAAACTTGCCAATAACCACCTTTCAAGAACTGCACCGTTTGTCCTCATCTGGGCAATCCAATGGTTTAGAAAAACTGAAACAACTGCTTCTTCGAAAATTAAAACAA---TGC----GGGG---GGT-GGGGG--GGGAAGTAGTaacaa-------acaaacaaacaaaaaa-GGCACACT--GGTTTTTACTCTA-------CTGAAGCAATCAAC-TCTCCAAATAACTTCATTAATGAGTGTC--AGCAAAGAATGAACACCAAAATACCGCTCAATCTAACTTCCATCGTGAATTCCTGAGTTCACAGTAGGAGC------ATTAAATGTGACGGTATCACTCTGCTATAAGAAC---CATTTC-----CAAAAC-AAACCTATCTACCCCCTTTCTTGAGTTTaaa----aa
i macFas5.chr7              C 0 I 6
s macNem1.NW_012011056v1        60541 851 +   6271500 AAACTGGCTCTATAGTTTTAAAGTACAACGCCTGTGCCTGAAGAAAATTTGTCTTTAGCTTCATCAGGTGAAGAAAATTGGTTTTATAACACAAGGCCC---ACCAAACCAGAAAAGCCCAGGAACGCTTCTCCACATGACTCACTTAGCATGAGAAATCACTCACAACAAACTGACATACACAGTTATTTCTCAAATTTTTCTTTTTCATTTAGCAG-----AGGGTAAAGGAACAC---AACTGAAGTTAACAGTAAATGACACTCTGGCTATTTTGTTCATTTGTCAATATGAATGACAGACATTTAAGCTAGTTCCATCTGGAGAACTGAAACAGAATCATGTTCATATAATAAGCCACACAAATT--ATTCAGTGGAATACGTGCACCCAAAACTGGACCAGACTTGTACTTAATGCAGCCTGCAAATCCCCAAGAGTCCACGACGGAATACAAGAACAGTAACACTGGTT--TCTTAACTGATCTTAGCTCCTTCACAAACTTGCCAATAATGACCTTTCAAGAACTGCACCGTTTGTCCTCATCTGGGCAATCCAATGGTTTAGAAAAACTGAAACAACTGCTTCTTCGAAAATTAAAACAA---TGC----GGGG---GGT-GGGGG--TGGAAGTAGTaacaa-------acaaacaaacaaaaaa-GGCACACT--GGTTTTTACTCTA-------CTGAAGCAATAAAC-TCTCCAAATAACTTCATTACTGAGTGTC--AGCAAAGAATGAACACCAAAATACCGCTCAATCCAACTTCCATCGTGAATTCCTGAGTTCACAGTAGGAGC------ATTAAATGTGACGGTATCACTCTGCTATAAGAAC---TACTTC-----CAAAAC-AAACCTATCTACCCCCTTTCTTGATTTTaaa------
i macNem1.NW_012011056v1    C 0 I 4
s chlSab2.chr29               3892286 855 +  24206276 AAACTGGCTCTATAGTTCTAAAGTGCAACGCCTGTGCCTGAAGAAAATTTGTCTTTAGCTTCATCAGGTGAAGAAAATTGGTTTTATAACACAAGGCCC---ACCAAACCAGAAAAGCCCAGGAACGCTTCTCCACATGACTCACTTAGCATGAGAAATCACTCACAGCAAACTGACATACACAGTTATTTCTCAAATTTTTCTTTTTCATTTAGCAG-----ATGGTAAAGGAACAC---AACTGAAGTTAACAGTAAATGACACTCTGGCTATTTTGTTCATTTGTCACTGTGAATGACAGACATTTAAGCTAGTTCCATCTGGGGAACTGAAACAGAATCATGTTCATACAATAAGCCACACGAACCAAATTCAGTGGAATACGTGCACCCAAAACTGGACCAGACTTGTACTTAATGCAGCCTGTAAATCCCCAAGAGTCCACGACGGAATACAAGAACAGTAACACTGGCT--TCTCAACTGATCTTAGCTCCTTCACAAACTTGCCAATAATGACCTTTCAAGAACTGCACCGTTTGTCCTCATCTGGGCAATCCAATGGTTTAGAAAAACTGAATAAACTGCTTCTTCGAAAATTAAAACAA---TGC---GGGGG---GGT-GGGGG---GGAAGTAGTAAC-A-------ACAAAAA---AAAAGA-GGCACACT--GGTTTTTACTCTA-------CTGAAGCAATCAAC-TCTCCAAATAACTTCATTAATGAGTGTC--AGCAAAGAATGAACACCAAAATACCGCTCAATCTAACTTCCATCGTGAATCCCTGAGTTCACAGTAGGAGC------ATTAAATGTGACGGCATCACTCTGCTATAAGAAC---CATTTC-----CAAAAC-AAACCTATCTACCCCCTTTCTAGAGTTTAAAAAagaa
i chlSab2.chr29             C 0 I 6
s manLeu1.NW_012105520v1       389969 855 -   1458659 AAACTGGCTCTACAGTTTTAAAGTGCAACGCCTGTGCCTGAAGAAAATTTGTCTTTAGCTTCATCAGGTGAAGAAAATTGGTTTTATAACACAAGGCCC---ACCAAACCAGAAAAGCCCAGGAACGCTTCTCCACATGACTCACTTAGCATGAGAAATCACTCACAGCAAACTGACACACACAGTTATTTCTCAAATTTTTCTTTTTCATTTAGCAG-----ATGGTAAAGGAACAC---AACTGAAGTTAACAGTAAAAGACACTCTGGCTATTTTGTTCATTTGTCACTATGAATGACAGACATTTAAACTAGTTTCATCTGGGGAACTGAAACAGAATCATGTTCATATCATTAGCCACACGAACCAAATTCAGTGGAATACGTGCACCCAAAACTGGACCAGACTTGTACTTAATGCAGCCTGCAAATCCCCAAGAGTCCACGACGGAATACAAGAACAGTAACACTGGTT--TCTCAACTGATCTTAGCTCCTTCACAAACTTGCCAATAATGACCTTTCAAGAACTGCACCGTTTGTCCTCATCTGGGCAATCCAATGGTTTAGAAAAACTGAATAAACTGCTTCTTCGAAAATTAAAACAA---TGC----AGGG---GGT-GGGGG---GGAAGTAGTAACAA-------ACAAACA---AAAAAA-GGCACACT--GGTTTTTACTCTA-------CTGAAGCAATCAAC-TCTCCAAATAACTTCATTAATGAGTGTC--AGCAAAGAATGAACACCAAAATACCGCTCAATCTAACTTCCATCGTGAATTCCTGAGTTCACAGTAGGAGC------ATTAAATGTGAAGGTATCACTCTGCTATAAGAAC---CATTTC-----CAAAAC-AAACCTATCTACCCCCTTTCTTGAGTTTAaaaaagaa
i manLeu1.NW_012105520v1    C 0 I 6
s colAng1.NW_012116021v1      3836769 850 -   4111199 AAACTGGCTCTACAGTTTTAAAGTGCAACGCCTGTGCCTGAAGAAAATTTGTCTTTAGCTTCATCCGGTGAAGAAAATTGGTTTTATAACACAAGGCCC---ACCAAACCAGAAAAGCCCAGGAACGCTTCTCCACATGACTCACTTAGCACGAGAAATCACTCACAGCAAACTGACACACACAGTTATTTCTGAAATTTTTCTTTTTCATTTAGCAG-----ACGGTAAAGGAACAC---AACTGAAGTTAACAGTAAATGACACTCTGGCTATTTTGTTCATTTGTCACTATGAATGACAGACATTTAAGCTAGTTCCATCTGGGGAACTGAAACAGAATCATGTTCATATAATAAGCCACACGAACCAAATTCAGTGGAATACATGCACCCAAAACTGGACCAGACTTGTACTTAATGCAGCCTGCAAATCCCTAAGAGTCCATGACGGAATACAAGAACAGTAACACTGGTT--TCTCAACTGATCTTAGCTCCTTCACAAACCTGCCAATAATGACCTTTCAAGAACTGCACCGTTTGACCTCATCTGGGCAATCCAATGGTTTAGAAAAACTGAATAAACTGCTTCCTCGAAAATTAAAACAC---TGCGGGGGGGG---GGT-GGGGT---GGAAGTAGTAACAA-------AA--------AAAAAA-GGCACACT--GGTTTTTACTCTA-------CTGAAGCAATCACC-TCTCCAAGCAACTTCATTAATGAGTGTC--AGCAAAGAATGAACACCAAAATACCGCTCAATCCAACTTCCATTGTGAATTCCTGAGTTCACAGAAGGAGC------ATTAAATGTGACGGTATCACTCTGCTATAAGAAC---CACTTC-----CAAAAC-AAACCTATCTACCCCCTTTCTTGAGTTTaaa----aa
i colAng1.NW_012116021v1    C 0 I 154
s calJac3.chr10              18225587 853 + 132174527 AAAGTGACGTTA-GTTTTAAAAGTGCAATGTCTGTAGCTGAAGAAAATTTGTCTTTAGTTTCATCAGGCGAAGAAAGTTAGTTTTATAACACAAGGCCC--------ACCAGAGAAGCCCAGGAACGCTTCTCCACATGACTCACTTAGCATGGGAAATCACTCAAAGCAAACTGACACACACAG-TATTTCTCTAATTTTTCTTTTTTCATTTGCAA-----GTGGTAAAGGAAC----------AAGTTAACGATAAATGACACTCTGGACATTTTCTTC------CACTATGAATGACAGACATTTAAGCTAGTTCCATCTGGGAAACTCAAACAGAATTACGTTCATCTCATAAGCCACGAGAACCAAATTCACTGGGATACGAGCACCCAAAACTTGACAAGACTTGTACTTAATGCAGCCTGCAAATCCCCAAGAGTACACGATGGAATACAAGAACGGGAACACTGATTTATCTCAACTGATGTCAGCTCCTTCACAAACTTGCTAATAATGACCTTTTAAGAACTGCAACTTTTGTCCTCATCTGGGCAATCCAACGGTTTAGAAAAACTGAATAAACTGCTTCTTCGAAAAATAAAACAGTTGTGG----GGGG---GGC-GGGTGAGGGCGAGTAGCAACAACAACAACA---------ACAAAA-GGCACAGTACAGTTTTTACTGTA-------CTGAAGCAGTAAAACTCTCCAAATAACTTCAATAAGGAGTGTCACAGCAAAGAATGAACACCAAAATAAAGTTCAATCCAACTTTCACTGCGAATTCCTGAGTTCACAGTAGGACCTAGAAAATTAAACCCGACGGTATCACTCGACTGTAAGAAC------TTCCAAAACAAAAC-AAACCTATCTATCCCCTTTCTTGATTTAAAA----TA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49716810 854 +  54856640 CAAGTGACTGTA-GTTTTAAAAGGGAAACGCCTGTGCCTAAAGAAAATTTGTCTTTAGCTTCACCAGGTGAAGAAAGTTAGTTTTATAACACAAGGCCC--------ACGGGAGAAGCCCAGGAACGCTTCCCCACATGACTCACTTAGCATGGGAAATCACTCAAAGCAACCTGACACACACAC-TATTTCTCAAATTTTTCTTTTACATTTAGCAG-----GTGGTAAAGGAACAC---AACTGAAGTTAAAGATAAATGACACTATGCACATTTTCTTC------CACTATGAATGACAGACATTTAAGCTAGTTCCATCTGGGAAACTCAAACAGAATTATGTTCATCTCATAAGCCACAAGAACCAAATTCAGTGGAATACGAGCACCCAAAACTTGACAAGACTTGTACTTAATGCAGCCTGCAAATCCGCAAGAGTCCACGATGGAACACAAGAACAGGAACACTGATTTATCTCAACTGATGTCAGCTCCTTCACAAACTTGCCAATAATGACCTTTTAAGAACTGCACCCTTTGTCCTCATCTGGGCAATCCAACGGTTTAGAAAAACTAAATAAACTGCTTCTTCGAAAAATAAAACAGTTGTGT----GGGGTGAGGCGGGGTGCGGGCGAGTAGCAACAA-------A---------AAAAAA-GGCACACT--GGTTTTTACTGTA-------CTGAAGCAATAAAG-TCTCCAAATAACTTCATTAAGGAGTGTCATAGCAAAGAATGAACACCAAAATAACGCTCAATCCAACTTTCACTGCGAATTCCTGAGTTCACAGTAGGAACTAGAAAATTAAACGTGACGATATCACTCGGCTATAAGAAC------TTCCAAAACAAAAC-AAACTTACCTACCCGCTTTCTTGatttaaaa----aa
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39951349 848 +  42888418 AAAGTGATTGCA-GTTTTAAAAGTGCAATGCCTGTGCCTGAAGAAAATTTGTCTTTAGTTTCATCAGGTGAAGAAAGTTAGTTTTATAACACAAGGCCC--------ACCGGAGAAGCCCAGGAATGCTTCTCCACATGACTCACTTAGCATGGGAAATCACTCAAAGCAAACTGACACACACAG-TATTTCTCAAATTTTTCTTTTTCATTTAGCAG-----GTGGTAAAGGAACAC---AACTGAAGTTAACGATAAATGACACTCTGGACATTTTCTTC------CACTATGAATGACAGACATTTAAGCTAGTTCCGTCTGGGAAACTCAAACAGAATTATGTTCATCTCATAAGTCACAAGAACCAAATTCAGTGGAATACGAGCACCCAAAACTTGACAAGACTTGTATTTAACGCAGCCTGCAAATCCCCAAGAGTCCACGATGAAATACAAGAACAGGAACACTGATTTATCTCAACTGATGTCAGCTCCTTCACAAACTTGCCAATAATGATCTTTTAAGAACTGCACCCTGTGTCCTCATCTGGGCACTCCAACGGTTTAGAAAAACTGAATAAACTGCTTCTTCGAAAAATAAAACAATTGTGT----GGGG---GGC----TGCGGGAGAGTAGCAACAA-------A---------AAAAAA-GGCACACT--GGTTTTTACTGTA-------ATGAAGCAATAAAC-TCTCCAAATAACTTCATTAAGGAGTGTCATAGCAAAGAATGAACGCCAAAATAACGCTCAATCCAACTTTCACTGCGAATTCCTGAGTTCACAGTAGGACCTAGAAAATTAAACGTGACGGTATCACTCCGCTATAAGAAC------TTCCAAAACAAAACAAAACCTATCTACCCTCTTTCTTGGTTTAAAA----AA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9482750 827 -  19069880 AAAGCGACTTTGTAGTTTAAAAGCACAATGCTTATGCCTTAAGAAAATTTGTCTTTGGCTTCCTCAGGCAACAAAAGTTGGTTTTAGAGCAAAGTGACCCCAACCAAACCAGAAAACCCCAGGAACACTTCTCTATATTACTCTCTTAGCATGAAAAACTGATC--------TCGTGATATACAGTTATTTCCCAAATTTTTCTTTTTAAT------------ATGACAAAGGGATACAATAACTGAAAT------TAAATGACACGCTGATAACTTTGTTC------CACTACAAA----AGACAATTAAACTAATTCTACCTGAGGAATTTAAATAGAATTATTCTTATATTATAAGCCAAACTAACCAAATTCTGTGGAGTCAGTGAACCCAAAACCTAACAAGGCTTGCACCTGACACAGTGCTCCAATCTCCAC-CGTCCAAGAAGGAATAGGAGATCAGTAACACTGATTTATCTCAATTGATCATAACTTCTTTACAAACTTGCAAACAATGACCTTTCAAGAACTGCAGCATTTGTCTTGATGTGGGCAATCCAATGGTTTAGAAAGCCTGAATAAGCTGCTGCTTCTAAAAATAAAACGG---TGT----GGAG---GGG-GGGAA-------------ACCT-------G---------GGGGGT-CGCACTCT--GCGTTTTGCTTTATACTTGCCTGGAGCAATAAAC-TCTCAAAATAACTTCAGTAGGGAGTGTAATAGCAAAGAATGAACACCAAAATATTGCTCAATCCAACTTTCATTGTGAATTCCTGAGTTCACAGTAGGATCTAGAAACTTAAACGTGACTGAATCATTTTGCTGTCAGAACTAGTATTTCCAAAACAAAAC-AAACTTGTCTACTCCCTTTCTTGATT-----------
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        55645 890 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=13616.000000
s hg38.chr15_KI270850v1_alt    302295 23 +    430880 aaaaaaaaaa----aaaa-gaaggaaaa
s gorGor5.CYUI01015556v1         9708 24 -   1709092 aaaaaaaaaa----aaaaagaaggaaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107056972 23 - 169600520 agagagagag----gaga-gaaagaaag
i rheMac8.chr7              I 6 I 4
s macFas5.chr7               65412446 23 + 171882078 agagagagag----gaga-gaaagaaag
i macFas5.chr7              I 6 I 4
s macNem1.NW_012011056v1        61396 23 +   6271500 agagaaagag----gaca-gaaagaaag
i macNem1.NW_012011056v1    I 4 I 4
s chlSab2.chr29               3893147 23 +  24206276 agagagagag----gaga-gaaagaaag
i chlSab2.chr29             I 6 I 4
s manLeu1.NW_012105520v1       390830 22 -   1458659 agagagagag----gaga-gaaagaaa-
i manLeu1.NW_012105520v1    I 6 I 1
s calJac3.chr10              18226440 15 + 132174527 AAA-----------GGGG-GGGGGGAC-
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49717664 26 +  54856640 aaaaaaaaaaaGGCGGAG-GGGGGGAG-
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39952197 16 +  42888418 AAGG----------GGGA-GGGGGAAG-
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9483577 15 -  19069880 ----AAAAAA----TCAA-GGAGG----
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3837619 154 -   4111199 I
e cerAty1.NW_012001384v1        55645 890 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=334757.000000
s hg38.chr15_KI270850v1_alt    302318  97 +    430880 TTTGAGGGTTTTTGATTTTTT-CAACTTCACATACCGGTTTGCCTTTGC----AAAAAAAAAAAAA----------------------------------------------------TTGTTTAGTCTCAAAGTATAGCTGCAAGGTGGACCG
s gorGor5.CYUI01015556v1         9732 104 -   1709092 TTTGAGGGTTTTTGCTTTTTTTCAACTTCACATACCGGTTTGCCTTTGC----aaaaaaaaaaaaa-----------------------------------aaaaaa-----------TTGTTTAGTCTCAAAGTATAGCTGCAAGGTGGACCG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107056999  97 - 169600520 TTTGAGGGTTTTT-CCTTTTT-CAATTTCACATACCGGTTTGCCTTTAC---AAAAAAAAAAAAAT----------------------------------------------------AAGATTAGTCTCAAAGTATAGCTGCAAGTTGGACCG
i rheMac8.chr7              I 4 C 0
s macFas5.chr7               65412473  96 + 171882078 TTTGAGGGTTTTT-CCTTTTT-CAATTTCACATACCGGTTTGCCTTTAC----AAAAAAAAAAAAT----------------------------------------------------AAGATTAGTCTCAAAGTATAGCTGCAAGTTGGACCG
i macFas5.chr7              I 4 C 0
s macNem1.NW_012011056v1        61423  97 +   6271500 TTTGAGGGTTTTTGCTTTTTT-CAATTTCACATACCGGTTTGCCTTTAC----AAAAAAAAAAAAT----------------------------------------------------AAGATTAGTCTCAAAGTATAGCTGCAAGTTGGACCG
i macNem1.NW_012011056v1    I 4 C 0
s chlSab2.chr29               3893174 101 +  24206276 TTTGAGGGTTTTTCCTTTTTT-CAATTTCACATACCGGTTTGCCTTTACaaaaaaaaaaaaaaaaa----------------------------------------------------aaGATTAGTCTCAAAGTACAGCTGCAAGTTGGACCG
i chlSab2.chr29             I 4 C 0
s manLeu1.NW_012105520v1       390853  97 -   1458659 TTTGAGGGTTTTTCCTTTTTT-CAATTTCACATACCGGTTTGCCTTTCC----AAAAAAAAAAAAT----------------------------------------------------AAGATTAGTCTCAAAGTATAGCTGCAAGTTGGACCG
i manLeu1.NW_012105520v1    I 1 C 0
s colAng1.NW_012116021v1      3837773  93 -   4111199 TTTGAGGGTTTTTCCTTTTTT-CAATTTCACATACCGGTTTGCCTTTAC--------AAAAAAAAT----------------------------------------------------AAGATTAGTCTCAAAGTACAGCTGCAAGTTGGACCG
i colAng1.NW_012116021v1    I 154 I 482
s calJac3.chr10              18226455 139 + 132174527 GTTGAGGGTTTTTCC-TTTTT-CAACTTCACAAACTGGTTGG-CTTTGC----AAAAAAAAAAAAA--------GGCAGTGAGCCATACTTACAAAAAAAAAAAAAAAGTGTTTTGTTTTGTTTGCTCTCAAGATATAGCTGCAAGTTGAGCCA
i calJac3.chr10             C 0 I 27
s saiBol1.JH378108           49717690 147 +  54856640 TTTGAGGGGTTTTCCTTTTTT-CAACTTCACATACTGGTTGG-CTTTGC----AAAAAGAAAAAAAAAAAAAATGGCAGTGAGCCATATTTACCAAAAAAAAAAAAAAA-GTTTTGTTTTGTTTGCTCTCAAGATATAGCTGCAAGTTGAGCCG
i saiBol1.JH378108          C 0 I 27
s aotNan1.NW_018505940v1     39952213 136 +  42888418 TTTGAGGGTTTTTCCATTTTC-CAACTTCACATACTGGTTGG-CTTTGC----AAAAAAAAAAAA---------GGCAATGAGTCATATTTACAAAAAAATAAAAAT---GTTTTGTTTTGTTTGCTCTCAAGATACAGCTGCAAGTTGAGCCG
i aotNan1.NW_018505940v1    C 0 I 27
s otoGar3.GL873548            9483592 123 -  19069880 ---------TCCCCATTTTTT-ATAATTTACATACTGGTTGG-CTTTGC----AAAGGAGGAGCAG-------------GGAGTCATATTTACAAAAATAAAAGATAAAAATGTT---TTGTGTGGTCTCAAAGTGTAGCTCCAAGTTGAGCCT
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        55645 890 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=111501.000000
s hg38.chr15_KI270850v1_alt    302415 42 +    430880 -------------------------------GCTGCACGGGTCCCAGAGGGCCGCTCGCCTCCGACGGTCGCA
s gorGor5.CYUI01015556v1         9836 42 -   1709092 -------------------------------GCTGCACGGGTCCCAGAGGGCCGCTCGCCTCCGACGGTCGCA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107057096 41 - 169600520 -------------------------------ACCGCACAGGTCTCC-TGGGTCATTCGACTCGGAGCGGCGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65412569 41 + 171882078 -------------------------------ACCGCACAGGTCTCC-TGGGTCATTCGACTCGGAGCGGCGGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        61520 41 +   6271500 -------------------------------ACTGCACAGGTCTCC-TGGGTCATTCGACTCGGAGCGGCGGG
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29               3893275 41 +  24206276 -------------------------------ACCGCACAGGTCTCC-TGGGTCATTCGACTCGGAGCGGCGGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       390950 41 -   1458659 -------------------------------ACCGCACAGGTCTCC-AGGGTCATTCGACTCGGAGCGGCGGG
i manLeu1.NW_012105520v1    C 0 C 0
s calJac3.chr10              18226621 41 + 132174527 -------------------------------ACCGCACAGGTCTCC-TGGGCCGCTCGCCTCAGACCCGCGCG
i calJac3.chr10             I 27 C 0
s saiBol1.JH378108           49717864 41 +  54856640 -------------------------------ACCGCACAGGTCTCC-CGGGCCGCCCGCCTCCGACCAGCGCG
i saiBol1.JH378108          I 27 C 0
s aotNan1.NW_018505940v1     39952376 41 +  42888418 -------------------------------ACCGCACAGGTCTCC-TGGGCCGCTCGCCTCCGACCAGCGCG
i aotNan1.NW_018505940v1    I 27 C 0
s otoGar3.GL873548            9483715 71 -  19069880 GCTCGCTGCCAGTCTCCCAGAGCGCGTGCAGACCGCACGGGTCCCG-CCGGCAGCCGGCCTCCGACCCGCGG-
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3837866 482 -   4111199 I
e cerAty1.NW_012001384v1        55645 890 -   5160157 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=387758.000000
s hg38.chr15_KI270850v1_alt    302457 88 +    430880 GTTTCAGCCGGGCCGCGCCCGCGAGAAACAGCGGAGAGGCCCCAGCAGGCGGGCGCCGCCGGACAGGTTTACCGTCCGCGTCGGCCCC
s gorGor5.CYUI01015556v1         9878 88 -   1709092 GTTTCAGCCGGGCCGCGCCCGCGAGAAACAGCAGAGAGGCCCCAGCAGGCGGGCGCCGCCGGACAGGTTTACCGTCCGCGTCGGCCCC
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107057137 86 - 169600520 GTTTCAGCCGGGCCGCGTCCGGGAGAAGCAGCGGAGA--CCCCAGCAGGCGGGCGCCGTCGGACAGATTTACCGTCTGCGTCGGCCCC
i rheMac8.chr7              C 0 I 1
s macFas5.chr7               65412610 86 + 171882078 GTTTCAGCCGGGCCGCGTCCGGGACAAGCAGCGGAGA--CCCCAGCAGGCGGGCGCCGTCGGACAGATTTACCGTCTGCGTCGGCCCC
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011056v1        61561 85 +   6271500 GTTTCAGCCGGGCCGCGTCCCGGAGAAGCAGCGGAGA--CCCCAGCAGGCGGGCGCCGTCGGACACATTTACCGTCCGCGTCGG-CCC
i macNem1.NW_012011056v1    C 0 I 1
s cerAty1.NW_012001384v1        56535 86 -   5160157 GTTTCAGCCGGGCCGCGTCCAGGAGAAGCAGCGGAGA--CCCCAGAAGGCGGGCGCCGTCGGACAGATTTACCGTCTGCGTCGGCCCC
i cerAty1.NW_012001384v1    I 890 I 1
s chlSab2.chr29               3893316 86 +  24206276 GTTTCAGCCGGGCCGCGTCCGGGAGAAGCAGCGGAGA--CCCCAGCAGGCGGGCGCCGTCGGACAGATTTACCATCTGCGTCGGCCCC
i chlSab2.chr29             C 0 I 1
s manLeu1.NW_012105520v1       390991 86 -   1458659 GTTTCAGCCGGGCCGCGTCCGGGAGAAGCAGCGGAGA--CCCCAGCAGCCGGGCGCCGTCGGACAGATTTACCGTCTGCGTCGGCCCC
i manLeu1.NW_012105520v1    C 0 I 75
s calJac3.chr10              18226662 88 + 132174527 GTTTCAGCCCGGCGGCGCCCCCGAGGAGGCGCAGAACGGCCCCGGCAGGCGGGCGCGGCCCGACGTGTTTACCGCCCGGGTCGGCCCC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49717905 88 +  54856640 GTTTCAGCCCGGCCGCGCCCCCTAGAAGGCGCAGAACGGCTCCGGCAGGCGGGCGCGGCCCGACGTGTTTACCGCCCGGGTCGGCCCC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39952417 88 +  42888418 GTTTCAGCCTGGCCGCGCCCCCGAGAAGGCGCAGAACGGCCCCGGCAGGCGGGCGCGGCCCGACGTGTTTACCGCCCGGGTCGGCCCC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9483786 88 -  19069880 GGGTCAGGCGAGCCGCGCCCGGGAGCAGGCGAGGAGAGGGCCCCGCAGGCGGGCGCGGCCCGACGTGTTTACCGCCGGCGTCGGCCCG
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3837866 482 -   4111199 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=1230992.000000
s hg38.chr15_KI270850v1_alt    302545 360 +    430880 GGGGAACCGCTCCCTCGCGCCCGCAGCACTTGTTCGCGGC-GCGGACTCCA--------------------------------------------CACCGCGGCCGCCCGCCCCAGGGGAGGAGTGAGTCCGCCCCAGCGGCGCCAACC-CGGGGACCCGGGGCA-AGGGTTCGGGGCC----------------------------ATCCGCCGCCGGGCGCGCCCCCCATCCGGAAAGCGGCGACGGCCCCCAAGTTGGGCTGC--GGAGTGGGAGGCGCGCCG-AGCCCCAAGCAGACAATGCGGGAGAAGGGTGATGCGCAGGGAGGAGGGGTCCGCAAAGCTGA------GGTCCCCGCGCCGCCCGGCTACC--CATCCGTG-----CCGCCCGCCCCTGAAGCCCCGCGCAGCCCCCGACCCTCCTCTGGGGCCCGCCCCACCG
s gorGor5.CYUI01015556v1         9966 360 -   1709092 GGGGAGCCGCTCCCTCGCGCCCGCAGCACTTGTTCGCGGC-GCGGACTCCA--------------------------------------------CACCGCGGCCGCCCGCCCCAGGGGAGGAGTGAGTCCGCCCCAGCGGCGCCAACC-CGGGGACCCGGGGCA-AGGGTTCGGGGCC----------------------------ATCCGCGGCCGGGCGCGCCCCCCATCCGGAGAGCGGCGACGGCCCCCAAGTTGGGCTGC--GGAGTGGGAGGCGCGCCG-AGCCCCAAGCAGACAATGCGGGAGAAGGGTGATGCGCAGGGAGGAGGGGTCCGCAAAGCTGA------GGTCCCCGCGCCGCCCGGCTACC--CATCCGTT-----CCGCCCGCCCCTGAAGCCCCGCGCAGCCCCCGACCCTCCTCTGGGGCCCGCCCCACCG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107057224 346 - 169600520 GGGGAGCCGCTCCCCCGCTCCCGCAGCACTTGTTCCGGGC-GCGGACTCCA--------------------------------------------AACGGAGGCCGCCGGCCCCAGGGGAGGAGTGAGCCCGCCCCAGCAGCGCCACCC-AGAGGACCCGGGGC--AGGGTTCGGGGCC----------------------------ATCCGCGGCCGGGCGCGCCCCCCACCCGGAAAGCGGCGACGG-CCCCAAGTTGGGCTGC--GGAGTGGGAGGCGCGCCG-AGCCCCAAGCAGACAATGCGGGAGAAGGGTGATGCGCAGAGAGGAGGGGTCCGCAAAGCTGA------GGTCcccgcgccgcccggctacc--cgtccgtc-----ccgcctgcccCGGAAGCCCAGCGCAG------------CTCCGGGGCCCGCCCCACCT
i rheMac8.chr7              I 1 C 0
s macFas5.chr7               65412697 346 + 171882078 GGGGAGCCGCTCCCCCGCTCCCGCAGCACTTGTTCCGGGC-GCGGACTCCA--------------------------------------------AACGGAGGCCGCCGGCCCCAGGGGAGGAGTGAGCCCGCCCCAGCAGCGCCACCC-AGAGGACCCGGGGC--AGGGTTCGGGGCC----------------------------ATCCGCGGCCGGGCGCGCCCCCCACCCGGAAAGCGGCGACGG-CCCCAAGTTGGGCTGC--GGAGTGGGAGGCGCGCCG-AGCCCCAAGCAGACAATGCGGGAGAAGGGTGATGCGCAGAGAGGAGGGGTCTGCAAAGCTGA------GGTCcccgcgccgcccggctacc--cgtccgtc-----ccgcctgcccCGGAAGCCCTGCGCAG------------CTCCGGAGCCCGCCCCACCT
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011056v1        61647 357 +   6271500 GGGGAGCCGCTCCTCCGCGCCCGCAGCACTTGTTCAGCGC-GCGGACTCCA--------------------------------------------CAGGGCGGCCGCCGGCCCCAGGGGAGGAGTGAGCCCGCCCCAGCAGCGCCAACC-AGGAGACCCGGGGA--AGGGTTCCGGGCC----------------------------ATCCGTGG-CGGGCGCACCCCCCACCCGGAAAGCGGCGACGG-CCCCAAGTTGGGCTGC--GGAGTGTAAGGCGCGCTG-AGTCCCAAGCAGACAATGCGGGAGAAGGGTGATGCGCAGAGAGGAGGGGTCCGCAAAGCTGA------GGTCcccgcgccgcccggctccc--cgtccgtc-----ccgcctgcccCGGAAGCCCCGCGCAGCCGCCGACCCTCCTCCGGGGCCCGCCCCACCT
i macNem1.NW_012011056v1    I 1 C 0
s cerAty1.NW_012001384v1        56622 346 -   5160157 GGGGAGCCGCTCCCACGCTCCCGCAGCACTTGTTTCGGGC-GCGGACTTCA--------------------------------------------AACGGAGGCCGCCGGCCCCAGGGGAGGAGTGAGCCCGCCCCAGCAGCGCCACCC-AGAGGACCCGGGGC--AGGGTTCGGGGCC----------------------------ATCCGCGGCCGGGCGCGCCCCCCACCCGGAAAGCGGCGACCG-CCCCAAGTTGGGCTGC--GGAGTGGGAGGCGCGCCG-AGCCCCAAGCAGACAATGCGGGAGAAGGGTGATGCGCAGAGAGGAGGGGTCCGCAAAGCTGA------GGTCCCCGCGCCGCCCGGCTACC--CGTCCGTC-----CCACCTGCCCCGGAAGCCCAGCGCAG------------CTCCGGGGCCCGCCCCACCT
i cerAty1.NW_012001384v1    I 1 C 0
s chlSab2.chr29               3893403 347 +  24206276 GGGGAGCCGCTCCCCCGCTCCCGCAGCACTTGTTCCGGGC-GCGGACTCCA--------------------------------------------AACGGAGGCCGCCAGCCCCAGGGGAGGAGTGAGCCCGCCCCAGCAGCGCCACCC-AGAGGACCCGGGGC--AGGGTTCGGGGCC----------------------------ATCCGCGGCCGGGCGCGCCCCCCACCCGGAAAGCGGCGACGGCCCCCAAGTTGGGCTGC--GGAGTGGGAGGCGCGCCG-AGCCCCAAGCAGACAATGCGGGAGAAGGGTGATGCGCAGAGAGGAGGGGTCCGCAAAGCTGA------GCTCcccgcgccgcccggctacc--cgtccgtc-----ccgcctgcccCGGAAGCCCCGCGCAG------------CTCCGGGGCCCGCCCCACCT
i chlSab2.chr29             I 1 C 0
s calJac3.chr10              18226750 358 + 132174527 GGAGAACCGCTCCCTCGCGCGCGCAGCACTTGTTCGAGGC-GCGCACTCCA--------------------------------------------CACCGCGGCCGCCAGCCCCACGGCAGGAgcgggcccgcccccgcggcgccgacc-cggggacccgggccAGGGGTTCGGGGGCCTCACTGGGG------CGACTGAGGAGGCCTCCGCGGCCGAGCGCGTCTCCGACCCGGAAAGCGGTGACTG-ACCCAAGCGGCGCCGC--GGGGTGGGAAGCGCGCCG-AGCCCGGAACAGACAATGCGGGAGAAGGGTGATGCGAAGGGAGGAGGGGTCCGCAGAGTAGA------GGTCCCGGCGCCGCCAGGCAACC--CGTCCGTC-----CCGCCCGCCCCTAAAGCCCGCTGCAGACCCCGCC------------------------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49717993 370 +  54856640 GGGGAACAGCTCCCTCGCGCCCGCAGCACTTGTTCGCGGC-GCGGACTCCA--------------------------------------------CACCGCGGCCGCCAGCCCCGGGGGAGGAGTGGGCCCGACCCCGCAGCGCCGACC-CGGGGACCCGGGCCACGGGGTTCGGGGCCTCACTGGGG-----------GCGGG-------GCGCCTGAGGGGGCCTCCGACCCGGAACGCGGCGACCA-ACCCAAGTGGCGCTGC--GGGGTCGGAGGCGCGCCG-AGCCCCGAACAGACAATGCGGGAGAAGGGTGATGCGAAGGGAGGAGGGGTCCGCAGAACAGA------GGTCCCGGCGCCGTCAGGCAACC--CGTCCGTC-----CCGCCCGCCCCGAAAGCCCCCCGCAGCCCTCGCCCCTTCTCCGAGGCCCGGCCCACCG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39952505 384 +  42888418 GGGGAACCGCTCCCTCGCGCCCGCAGCACTTGTTCGCGGC-GCGGACTCCA--------------------------------------------CACCGCTGCCGCCAGCCCCAGGGGAGGAGTGGGGCCGCCCCCGCGGCGCCGACC-CGGGGACCCTGGCCA-GGGGTTCGGGGCCTCACTGGGGGCGGGGCGCCTGAGGGGGCCTCCGCGGCCGAGCGCGTCTCCGACCCGGAGAGCGGCGACTG-ACCCAAGTGGCGCTGC--GGGGTGGGAGGCGCGCCG-AGCCCCGAACAGACAATGCAGGAGAAGGGTGATGCGAAAGGAGGAGGGGTCCGCAGAGCAGA------GGTCCCGGCGCCGCCAGGCAACC--CGTCCGTC-----CCGCCCGCCCCCAAAGCCCCCCAAGG---CCGCCCCTCCTCCGAGGCCCGCCTCACCG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9483874 388 -  19069880 GGGGAACCGCTCCCTCGCGCCCGCAGCACTTGTTCCAGGCGGCTGACTCCGGCCCCCCAGCGCGACCCGCAGAGCTGCCCGGCGCTCGCGGGGGCTACTGCGGCTGCCGCCCCCAGAAGAAGACTAAGCCAGCCTCGGCGGCGCCGACCGCGGGAGCCCGGAGCG-GGGGTCCAAGGAC-----------------------------------------------------CGAGGGGGCGGGGGCGGCCCCCAAGACGGGCTGCGGGGAGTGAGAGGCGCGCCGCGGCCGGGGACAGACAATGCGGGACCGGGGGGATGCG----GAGGAGGGGTGGCCAGAGCCGGccgcccggccgccccgccacccgagcaccgtcgtccgcccctctccgcccccctcca---cccccagcagccccgctcctcccTTTGTGCCTCG--CCACCG
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3837866 482 -   4111199 I
e manLeu1.NW_012105520v1       391077  75 -   1458659 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=1229200.000000
s hg38.chr15_KI270850v1_alt    302905 289 +    430880 ---AGCGGCCGCA-GGGGACGGG--CCGCGCTCCGCACCCCGA-CCCCTCCTCAAATCACAAAACTTCCCCCAACTCCGCCAACTAAGTTGCGCTCTCACCGTGCGGCTCCCGGGGCTCCCCCGCGGGCCGAGCCGAGACAGCTCCTCACCTTCGCCGCGGAGAAAGACAATAGGCTGCCTCTCCCCcggcggcggcagcagcggctgcggctaaagcggcggcAACCGAGGCGAGCAATGGGCACGGCGGTCTCGGCCGAGCCGAGGGGCTTCACCGCTGCTGCTCCGGCTCCGC
s gorGor5.CYUI01015556v1        10326 288 -   1709092 ---AGCGGCCGCA-GGGGACGGG--CCGCGCTCCGCACCCCGA-CCCCTCCTCAAATCACAAAACTTCCCCCAACTCCGCCAACTAAGTTGCGCTCTCACCGTGCGGCTCCCGGGGCTCCCC-GCGGGCCGAGCCGAGACAGCTCCTCACCTTCGCCGCGGAGAAAGACAATAGGCTGCCTCTCCCCcggcggcggcagcagcggctgcggctaaagcggcggcAACCGAGGCGAGCAATGGGCACGGCGGTCTCGGCCGAGCCGAGGGGATTCACCGCTGCTGCTCCGGCTCCGC
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107057570 278 - 169600520 ---AGCAGCCGCA-GGGGACTGG--CCGCGCTCCGCACCCCCA-CCCCTCCTCAAATTACAAAACTTGCCCCAACTCCGCCAACTAAGTTGCGCTCTCACAGTGAAGCTCCCGGGGCTCCCCCGCCG-----GCCGAGACAGCTCCTCACCTTCGCCGCACAGAAAAACAATAGGCAGCCGCTCCCCCGGCAGAG------GCGGCGGTGGCTAAAGAGGCGGCGACCGAGGCGAGCAACCGGCATGGCAGTCTCCGCCCAGCCCAGGCGCTTCACCGCTACTGCTCGGGCTACGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65413043 278 + 171882078 ---AGCAGCCGCA-GGGGACGGG--CCGCGCTCCGCACCCCCA-CCCCTCCTCAAATTACAAAACTTGCCCCAACTCCGCCAACTAAGTTGCGCTCTCACAGTGAAGCTCCCGGGGCTCCCCCGCCG-----GCCGAGACAGCTCCTCACCTTCGCCGCACAGAAAAACAATAGGCGGCCGCTCCCCCGGCAGAG------GCGGCGGTGGCTAAAGAGGCGGCGACTGAGGCGAGCAACCGGCATGGCAGTCTCCGCCCAGCCCAGGCGCTTCACCGCTACTGCTCGGGCTACGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        62004 278 +   6271500 ---AGCGGCCGCA-GGGGACGGG--CCGCGCTCCGCACCCCCA-CCCCGCCTCAAATTACAAAACTTGCCCCAACTCCGCCAACTAAGTTGCGCTCTCACAGTGACGCTCCCGGGGCTCCTCCGCCG-----GCCGAGACAGCTCCTCACCTTCGCCGCGCAGAAAAACAATAGGCGGCCGCTCCCCCCGCAGCG------GCGGCGGTGGCTAAACAGGCGGCGACCGAGGCGAGCAACGGGCACGGCAGTCTCCGCCGAACCCAAGCGCTTCAAAGCTGCTGCTCCGGCTCCGC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        56968 278 -   5160157 ---AGCAGCCGCA-GGGGACGGG--CCGCGCTCCGCACCCCCA-CCCCTCCTCAAATTACAAAACTTGCCCCAACTCCGCCAACTAAGTTGCGCTCTCACAGTGAAGCTCCTGGGGGTCCCCCGCCG-----GCCGAGACAGCTCCTCACCTTCGCCGCACAGAAAAACAATAGGCGGCCGCTCCCCCGGCAAAG------GCGGCGGTGGCTAAAGAGGCGGCGACCGAGGCGAGCAACCGGCATAGCAGTCTCCGCCCAGCCCAGGCGCTTCACCGCTACTGCTCGGGCTAAGC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3893750 279 +  24206276 ---AGCAGCCGCAGGGGGACGGG--CCGCGCTCCGCACCGCCACCCCCTCCTCAAATCACAAAACTTCCCCCAACTCCGCCAACTAAGTTGCGCTGTCACAGTGAAGCTCCCGGGGCTCCCCCGCCG-----GCCGAGACAGCTCCTCACCTTCGCCGCACAGAAAAACAATAGGCGGCCGCT-CCCCAGCAGAG------GCGGCGGTGGCTACAGAGGCGGCGACCGAGGCGAGCAACCGGCATGGCAGTCTCCGCCCAGCCCAGGCGCTTCACCGCTGCTGCTCGGGCTACGC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3838348 274 -   4111199 ---AGCGGCCGCA-GGGGACGGG--CCGCGCTCCGCACCCCCA-CCCCTCCTCAAATCACAAAACTTCCCCCAATTCCGCCAACTAAGTTGCGCTCTCACAGTGAGGCTCCC-GGGCTCCCCCGCGG-----GCCGAGACAGCTCCTCACCTTCGCCGCGCAGAAAAACAATAGGCTGCCGCTCCCCCGGCA---------GCGGCGGTGGCTAAAGAGGCTGCGACTGAGGCGAGCAACGGGCACGGCAGTCGCGACGGAGCCCAAGCGCTTAACAGCTGCTGCTCCGGCTCCCC
i colAng1.NW_012116021v1    I 482 C 0
s calJac3.chr10              18227108 238 + 132174527 --------------------------------------------CCCCTCCTCAAAT--CAAAACTTCCCCCAACTCCGGCAACTAAGTTGCGCTCTCACCGTGCGGCTCCCGGGGCTCCCCCGCGGGCCGAGCTGGGAGAGCTCCTCACCTTCGCCACGGAGAAAGACAATAGGCGGCCGCTCCACCG------------GTGGCGGCGGCTAAAGCAGTGGCGACTGAGGCGAGCAGTGGACACTACGGTATCGGCGGAGCCCAAGCGCTCCTCCGCGGCTGCTCCGGCTCCGC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49718363 275 +  54856640 ---AGCGGCCGCA-GGGGAGGGG--CGGCGCTCCGCACCCGGA-CCCCTCCTCAAAT--CAAAACTTCCCCCAACTCCGCCAACTAAGTTGCGCTCTCACCGTGCGGCTCCCGGGGCTCCCCCGCGGGCCGAGCCGGGACAGCTCCTCACCTTCGCCACGGAGAAATACAATAGGCGGCCGCTCCACCA------------GTGGCGACGGCCAAAGCGGTGGCGACCGAGGCGAGCAGTGGACACTACGGTCTCGGCGGAGCCCAAGCGCTTCTCCACAGCTGCTCCGGCTCCGC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39952889 275 +  42888418 ---AGCGGCCGCA-GGAGAGGGG--CGGCGCTCCGCACCCGGA-CCCCTCCTCAAAG--CAAAACTTCCCCCAACTCCGCCAACTAAGTTGCGCTCTCACCGTGCGGCTCCCGGGGCTTCCCCGCGGGCCGAGCCGGGACAGCTCCTCACCTTCGCCACGGAGAAAGACAATGGGCGGCTGCTCCACCG------------GTGGCGGCGGCTAAAGCGGTGGCGACCGAGGCGAGCAGTGGACACTACGATCTCGGCGGAGCCCAAGCGCTTCTCCGCGACTGCTTCGGCTCCGC
i aotNan1.NW_018505940v1    C 0 I 51
s otoGar3.GL873548            9484262 281 -  19069880 AGCAGCGGCAGCA-GGGGGAGGGGCCCGCGCCCCTCTCCGCTA-CCCTTTCTCAAACCACAAAACTTCCCTCAACTCCGCCAACTGAGTTGCGCTCTTACCTAGCGGCTCCCGGGGCTCCCCCGCGGGCCGAGCCGGAACAGCTCCACACCTTCGCCGCGGAGAAAGACAATAGGCGGCCGTTCCCCCG------------GCGGCGGCGGCTAAAGCGGCTGCGGCCCAGGATAGGAGCGGGCACCACGGTCTCGGTGGAGCCCAGGAGCTTCCCGGCGGCTGCTC-GGCCCCGC
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391077  75 -   1458659 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=128139.000000
s hg38.chr15_KI270850v1_alt    303194 53 +    430880 GACAGCTCTGCACGTAGCCCCAGCCACCCCGCGCACCGGCTACAAGCCGCCCG
s gorGor5.CYUI01015556v1        10614 53 -   1709092 GACAGCTCTGCACGTAGCCCCAGCCACCCCGCGCACCGGCTACAAGCTGCCCG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107057848 47 - 169600520 GCTGGCCCTGCACACAGCCCCG-----CCTGCGCACCAGCTACAAGC-GCCCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65413321 47 + 171882078 GCTGACCCTGCACACAGCCCCG-----CCTGCGCACCAGCTACAAGC-GCCCG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        62282 48 +   6271500 GCCAGCCCTGCACACAACCCCG-----CCTGCGCACCAGCTACAAGCTGCCCG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        57246 47 -   5160157 GCTGGCCCTGCACACAGCCCCG-----CCTGCGCACCAGCTACAAGC-GCCCG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3894029 48 +  24206276 GCTGCCCCTGCACACAGCCCCG-----CCTGCGCACCAGCTACAAGCTGCCCG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3838622 48 -   4111199 GCTGGCCCTGCACACAGCCCGG-----TCTACGCACCGGCTACAAGCTGCCCG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18227346 51 + 132174527 -GCTCCCCAGAACACAGACCCAGCCTGCCCGCGCATGCGCAGCAGCCTGCCC-
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49718638 51 +  54856640 -GCTCCCCAGCACACAGACCCAGCCCGCCGGCGCATGCGCCGCAGGCTGCCC-
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873548            9484543 53 -  19069880 GCTAGCCCTGCACACAGCCCTAGCGCACCCGCGCATGCGCCACACACCGCGCG
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39953164 51 +  42888418 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=2051951.000000
s hg38.chr15_KI270850v1_alt    303247 417 +    430880 GGGGTGGCCGGGGCACGCAA-GAGGGCAGTAACGTCTGCGAGTCCTCCCGTGAGTACACGCGGAG-CAAGGGCTGCGAGCTGGGATTGCACGGCAGAGCTGCCCATCCCGCTCCACGAGACCAATAGTAAGGCACCTGGGCGGGGCGCTCAGGTTGCTAAGGGAGGCTGAGGTTGACCGCCGGGGCTGCTCTGTGGCAAAGTGATCACAGCAGGGTGGCTGGCAGAGACTGCTCTGGGAAATGCCCACTCACGGTCTCCTCTCCGCCCTGTTTCTAGAAACTGCCCTTTCTCTGTGTGCTC-GTGGTTACCTGAGCTGTAGCATTTAACCACACATCGT-GAAATGATTTACTCCTCTATTTCCCCCACTTCAACTCAGGAAGTGGGGTTTAGTCTTGTGTGTCCACAGCCTAGGACACTC
s gorGor5.CYUI01015556v1        10667 417 -   1709092 GGGGTGGCCGGGGCACGCAA-GAGGGCAGTAACGTCTGCGAGTCCTCCCGTGAGTACACGCGGAG-CAAGGGCTGCGAGCTGGGATTGCACGGCAGAGCTGCCCATCCCGCTCCACGAGACCAATAGTAAGGCACCTGGGCGGGGCGCTCAGGTTGCTAAGGGAGGCTGAGGTTGACCGCCGGGGCTGCTCTGTGCTAAAGTGATCACAGCACGGTGGCTGGCAGAGACTGCTCTGGGAAATGCCCACTCACGGTCTCCTCTCCGCCCTGTTTCTAGAAACTGCCCTTTCTCTGTGTGCTC-GTGGTTACCTGAGCTGCAGCACTTAACCACACATCGT-GAAATGATTTACTCCTCTATTTCCCCCACTTCAACTCAGGAAGTGGGGTTTAGTCTTCTGTGTCCACAGCCTAGGACAGTC
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107057895 403 - 169600520 AGGGTGGGCGGGGCACGCAG-GAGGGCGGTAACGCCTGCGAGTCCTCCCGTGAGTACACGCGGAG-CAAGGGCTGCGAGCTAGGATTGCACGGCAGAGCTGCCCATCCCGCCCCACGAGACCAATAGTAAGGCACCTGGGCGGGGCACTCAGGTTGCTAAGGGAGGCTGAGGTTGACCGCCACTGCTGCTTTGTGGCAAAGTGATCAAATTAGAGTGGCTGGCAGAGACTTCTCT--------------TACCGTCTCCTCTCCGCCCTGTCTCCAGAAACCGCCCTTTCTCTGTGTGCCA-GTGGTTACCTGAGCTGCAGCACTTAACCACACATCGT-AAAATGATTTACTCCTCTATTTCCCCCACTTCAACTCAGGAAGTGAGGTTTAGTCTTCTGTGTGCACAGCCTAGGACAGTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65413368 403 + 171882078 AGGGTGGGCGGGGCACGCAG-GAGGGCGGTAACGCCTGCGAGTCCTCCCGTGAGTACACGCGGAG-CAAGGGCTGCGAGCTAGGATTGCACGGCAGAGCTGCCCATCCCGCCCCACGAGACCAATAGTAAGGCACCTGGGCGGGGCACTCAGGTTGCTAAGGGAGGCTGAGGTTGACTGCCACTGCTGCTTTGTGGCAAAGTGATCAAATTAGAGTGGCTGGCAGAGACTTCTCT--------------TACCGTCTCCTCTCCGCCCTGTCTCCAGAAACCGCCCTTTCTCTGTGTGCCA-GTGGTTACCTGAGCTGCAGCACTTAACCACACATCGT-GAAATGATTTACTCCTCTATTTCCCCCACTTCAACTCAGGAAGTGAGGTTTAGTCTTCTGTGTGCACAGCCTAGGACAGTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        62330 417 +   6271500 GGGGTGGGCGGGGCACGCAG-GAGGGCGGTAACGCCTGCGAGTCCTCCCGTGAGTACACGCGGAG-CAAGGGCTGCGAGCTAGGATTGCACGGCAGAGCTGCCCATCCCGCTCCACGAGACCAATAGTAAGGCACCTGGGCGGGGCACTCAGGTTGCTGAGAGAGGCTGAGGTTGACCGCAGCTGCTGCTTCGTGGCAAAGTGATCAAATTAGAGTGGCTGGCAGAGGCTGCTCTGGGAAATGCCCACCCACGGTCTCCTCTCCGCCCTGTCTCCAGAAACCGCCCTTTCTCTGTGTGCCG-GTGGTTACCTGAGCTGCAGCACTTAACCACATAGAGGAGAAATGATTTACTCCTCTA-TTCCCGCACTTCAACTCAGGAAGTGAGGTTTAGTCTTCTGTGTGCACAGCCTAGGACAGTC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        57293 389 -   5160157 AGGGTGGGCGGGGCACGCAG-GAGGGCGGTAACGCCTGCGAGTCCTCCCGTGAGTACACGCGGAG-CGAGGGCTGCGAGCTAGGATTGCACGGCAGAGCTGCCCATCCCGCCCCACGAGACCAATAGTAAGGCACCTGGGCGGGGCACTCAGGTTGCTAAGGGAGGCTGAGGTTGACTGCAGCTGCTGCTTTGTGGCAAAGTGATCAAATTAGAGTGGCTGGCAGAGACTTCTCT--------------TACCGTCTCCTCTCCGCCCTGTCTCCAGAAACCGCCCTTTCTCTGTGTGCCA-GTGGTTACCTGAGCTGCAGCACTTAACCACACATCGT-GAAATGATTTACTCCTCTATTTCCCCCACTTCAACTCAGGCAGTGAGGTTTAG--------------AGCCTAGGACAGTC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3894077 417 +  24206276 AGGGTGGGCGGGGCACGCAG-GCGGGCGGTAACGCCTGCGAGTCCTCCCGTGAGTACACGCGGAG-CGAGGGCTGCTAGCTAGGATTGCAAGGCAGAGCTGCCCATCCCGCTCCACGAGACCAATAGTAAGGCACCTGGGCGGGGCACTCAAGTTGCTAAGGGAGGCTGAGGTTGACCGCAGCTGCTGCTTTGTGGCAAAGTGATCAAATTAGAGTGGCTGGCAGAGACTGCTCTGGGAAATGCCCACCCACGGTCTCCTCTCCGCCCTGTCTCCAGAAACCGCCCTTTCTCTGTGTGCCG-GTGGTTACCTGAGCTGCAGCACTTAACCACACATCGT-GAAATGATTTACTCCTCTATTTCCCCCACTTCAACTCGGGAAGTGAGGTTTAGTCTTCTGTGTGCACAGCCTAGGACAGTC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3838670 417 -   4111199 GGGGTGGGCGGGGCACGCAG-GAGGGCGGTAACGCCTGCGAGTCCTCCCGTGAGTACGCGCGGAG-CAAGGGCTGCGAGCTAGGATTGCACGGCAGAGCTGCCCATCCCGCTCCACGAGACCAATAGTAAGGCACCTGGGCGGGGCACTCAGGTCGCTAAGGGAGGCTGAGGTTGACCGCAGCTGCTGCTTTGTGGCAAAGTGATCAAATTAGAGTGGCTGGCAGAGGCTGCTCTGGGAAATGCCCACCCATGGTCTCCTCTCCGCCCTGTCTCCAGAAACCGCCCTTTCTCTGTGTACCG-GTAGTTACCTGAGCTGCAGCACTTAACCACACATCGT-GAAATGATTTACTCCTCTATTTCCCCAACTTCAACTCAGGAAGTGAGGTTTAGTCTTCTGTGTGCGCAACCTAGGACAGTC
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18227397 417 + 132174527 GGGGTGGGCGGGGCACGCGG-GAGGGTTATAAAGCCCGAGAATCCTCCAGTGAATACACGCGGAGCCAAGGGCTACGAGCTGGGATTGCACGGCAGAGCTGCCCATTCCGCTCCACGACACCAATAGTAAGGCTCCTGGGCGGGGCACGCAGGTTGCTAAGGGAGGCTGAGGTTGACCGCCGCTGCTGCT-GGCGGCAAAGTGATCAAAGTGGGGTGGCCGGCTGAGGCTGCTCTGGGAAATGCCCACCCACGGTCTCCTCTCCGCCCTGTCTCCAGAAACCGCCCTTCCTCTGTGTGCCA-GTGGTTACCTGAACTGTAGCACTTAACCACACATCCT-GAAATGATTTACTCCTCTATTTCCCCCACTTCAAATCAGGAAGTGGGGTTTAGTGTTCTGTGTCCACAGCCTAGCAGAGTC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49718689 417 +  54856640 GGAGTGGGCGGGGCACGTGA-GAGGGCGGTAAAGCCTGAGAGTCCTCCAGTGAATACACGCGGAGCCAAGGGCTGCGAGCTGGGATTGCACGGCAGAGCTGCCCATCCCGCTCCACGAGACCAATAGTAAGGCTCCTGGGCGGGGCACGCAGGTTGCTAAGGGAGGCTGAGGTTGACCGCCGCTGTTGCT-GGCGGCAAAGTGATCAAAGTGGGGTGGCTGGCTGAGGCTGCTCTGGGACATGCCCACCCACGGTCTCCTCTCCGCCCTGTCTCCAGAAACCGCCCTTCCTCTGTGTGCCG-GTGGTTACCTGAACTGCAACACTTAACCACACATCCT-GAAATGATTTACTCCTCTATTTCCCCCACTTCAAATCAGGAAGTGGGGTTTAGTCTTCTGTGTCCACAGCCTAGCAGAGTC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39953215 417 +  42888418 GGGGTAGACGGGGCACGCGG-GAGGGCGGTAAAGCCTGAGAGTCCTCCAGTGAATACACGCGGAGCCAAGGGCTGCGAGCTGGGATTGCACGGCAGAGCTGCCCATCCGACTCCAAAAGACCAATAGTAAGGCTCCTGGGCGGGGTACGCAGGTTGCTAAGGGAGGCTGAGGTTGACCGCCGCTCTTGCT-GGCGGCAAAGTGATCAAAGTGGGGTGCCTGGCTGAGGCTGCTCTGGGAAATGCCCACCCACGGTCTCCTCTCCGCCCTGTCTCCAGAAACCGCCCTTCCTCTGTGTGCCG-GTGGTTACCTGAACTGTAGCACTTAACCACACATCCT-GAAATGACTTACTCCTCTATTTCCCCTACTTCAAATCAGGAAGTGGGGTTTAGTCTTCTGTGTCCACAGCCTAGCAGAGTC
i aotNan1.NW_018505940v1    I 51 I 5
s otoGar3.GL873548            9484596 402 -  19069880 AGGAGGGGCGGAGTGCCCAGAGAAGGCGGTAACGCCTACGAGTCCTCCCGTGAGTA-ACCAGGAGCCAAAGACCACGAGCTGGGATTGCATGTCAGAGCTGCCCGTCATGCTCCGTGCGACCAATAGAAAGGTTCTTGGGCGGTGCGCGTAAGTTGCTAAGGGAGGCTGAGGTTGACCGCCACTGCTGCGCCGCGGCAAAGTGATCAAAGTGGGGTGGCTGGTGGTAGAGGCTTTAGGGAATGCCCACCAGTTGTCTTCACTCTGCCGAATCTCAAGAAACCGCCCTTCCTCTGTGTGCCCTGTGCTTACCTGAGCTGTAGCACTTAACCACACACACT-GAAATGGCT--------TATTTCTCCCAGTTCAAATCAGGAAGTGCAGTTTAG----CAGTGTCCAAAGCTTTGGA-----
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391077  75 -   1458659 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=-4325.000000
s hg38.chr15_KI270850v1_alt    303664 21 +    430880 TAAGGTATTAGGTATTAAATA---
s gorGor5.CYUI01015556v1        11084 21 -   1709092 TAAGGTATTAGGTATTAAATA---
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107058298  8 - 169600520 TAAGGTAT----------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65413771  8 + 171882078 TAAGGTAT----------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        62747  8 +   6271500 TAAGGTAT----------------
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        57682  8 -   5160157 TAAGGTAT----------------
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3894494  8 +  24206276 TAAGGTAT----------------
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3839087 21 -   4111199 TAAGGTATTAGGTATTAAATA---
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18227814  5 + 132174527 -ACTGC------------------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49719106  5 +  54856640 -ACTGC------------------
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873548            9484998 10 -  19069880 -AAGTCAT-------------TGC
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39953632  5 +  42888418 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=1505283.000000
s hg38.chr15_KI270850v1_alt    303685 298 +    430880 TAGGTATTAAACAAGTGTT---GGATGGATGC---ACGGCGCTATGGCGGAATCACAATTGTGACAGTGCATTCCGTGAACTTTTGGCTACTCGATCACCAC--AGTCGTTCCGTGTTCAAGCTGCAAAGGACCTCAGAAATCATCGGATTGCTTTGAGAAAcaaaatgtggtccgtgtaccaacggcggccgaggagaatatattagttggtacacggagaaacttcttttttcaaatagttaagtgtt----ttagtgctcattaggag-ggaaatgcctatcacgtcaaatcattgtttcattaat--gt
s gorGor5.CYUI01015556v1        11105 298 -   1709092 TAGGTATTAAACAAGTGTT---GGATGGATGC---ACGGCGCTATGGCGGAATCACGATTGTGACAGTGCATTCCGTGAACTTTTGGCTACTCGATCACCAC--AGTCATTCCGtgttcaagctgcaaaggacctcagaaatcatcGGATTGCTTTGAGAAAcaaaatgtggtccgtgtaccaacggcggccgaggagaatatattagttggtacacggagaaacttcttttttcgaatagttaagtgtt----ttagtgctcattaggag-ggaaatgcctatcacgtcaaatcattgtttcattaat--gt
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107058306 300 - 169600520 TAGGTATTAAACAAGTGTT---GGATGGATGC---ACGGCGGTTTAGCGGAATCACAATTGTGACAGTGCATTCCGTGAACTTTTGGCTACTCGATCACCACAAAGTCATTCCGTGTTCGAGCTGCAAAAGACCTCAGAAATCATCTGGTTGCTTTGAGAAACAAAATGTGGTCCGTGTACCAACGGTGGCCGAGGAGAATATATTAGTTGATACACAAAGATACTTCTTTTTTCAAATAGTTAAGTGTT----TTAGTGCGCATTAGGAG-GGAAATGCCTATCACGTCAAACCATTGTTTCATTAAT--GG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65413779 300 + 171882078 TAGGTATTAAACAAGTGTT---GGATGGATGC---ACGGCGGTATAGCGGAATCACAATTGTGACAGTGCATTCCGTGAACTTTTGGCTACTCGATCACCACAAAGTCATTCCGTGTTCGAGCTGCAAACGACCTCAGAAATCATCTGGTTGCTTTGAGAAAcaaaatgtggtccgtgtaccaacggtggccgaggagaatatattagttgatacacaaagatacttcttttttcaaatagttaagtgtt----ttagtgcgcattaggag-ggaaatgcctatcacgtcaaaccattgtttcattaat--gg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        62755 300 +   6271500 TAGGTATTAAACAAGTGTT---GGATGGATGC---ACGGCGCTATAGCGGAATCACAATTGTGACAGTGCATTCCGTGAACTTTTGGCTACTCGATCACCACAAAGTCATTCCGTGTTCGAGCTGCAAATGACCTCAGAAATCATCTCGTTGCTTTGAGAAACAAAATGTGGTCCGTGTACCAACGGTGGCCGAGGAGAATATATTAGTTGATACACAAAGATACTTCTTTTTTCAAATAGTTAAGtgtt----ttagtgcgcattaggag-ggaaatgcctatcgcgtcaaaccattgtttcattaat--gg
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        57690 300 -   5160157 TAAGTATTAAACAAGTGTT---GGATGGATGC---ACGGCGCTATAGCGGAATCACAATTGTGACAGTGCATTCCGTGAACTTTTGGCTACTCGATCACCACAAAGTCATTCCGTGTTCGAGCTGCAAACGACCTCAGAAATCATCTGGTTGCTTTGAGAAACAAAATGTGGTCCGTGTACCAACGGTGGCCGAGGAGAATATATTAGTTGATACACAAAGATACTTCTTTTTTCAAATAGTTAAGtgtt----ttagtgcgcattaggag-ggaaatgcctatcacgtcaaaccattgtttcattaat--gg
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3894502 299 +  24206276 TAGGTATTAAACAAGTGTT---GGATGGATGC---ACGGCGCTATAGCGGAATCACAATTGTGACAGTGCATTCCGTGAACTTTTGGCTACTCGATCaccacaaagtcattccgtgttcgagctgcaaatgacctcagaaatcatctggtTGCTTTGAGAAAcaaaatgtggtccgtgtaccaacggtggcccaggagaatatattagttgatacacaaagatacttcttttttcaaatagttaagtgtt----ttagtgcgcatt-ggag-ggaaatgcctatcacgtcaaaccattgtttcattaat--gg
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3839108 300 -   4111199 TAGGTATTAAACAAGTGTT---GGATGGATGC---ACGGCGCTATAGCGGAATCACAATTGTGACAGTGCATTCCGTGAACTTTTGGCTACTCGATCACCACAAAGTCATTCCGTGTTCGAGCTGCAAATGACCTCAGAAATCGTCTGGTTGCTTCGAGAAACAAAATGTGGTCCGTGTACCAACGGTGGCCGAGGAGAATATATTAGTTGACACACAAAGATACTTCTTTTTTCAAATAGTTAAGTGTT----TTAGTGCACATTAGGAG-GGAAATGCCTATCACGTCAAACCATTGTTTCATTAAT--GT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18227819 290 + 132174527 TAGGTATTAAACAAGTGTT---GCATGGATGC---ACGGTGCTATGGCGGAATCACGATTGTGACAGTGCATTCCG--------TGGCTACTAGATCaccacaaagtcattccgtgttcgagctgcaaaggacctcagaaatcatctggtTGCTTTGAGAAAcaaaatgtaatctatgtaccaactgtggccgaggagaatatattagctggtacacgaagaaacttcttttttcaaatagttaagtgtt----gtagtgctcattaggag-gggaatgcctatcacgtcaaaccattgtttcattaat----
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49719111 291 +  54856640 TAGGTATTAAACAAGTGTT---GCATGGATGC---ACGGTGCTATGGCGGAATCACGATTGTGACAGTGCATTCCGTGAACTTTTGGTTACTCGATCaccacaaagtcattccgtgttcgagctgcaaaggacctcagaaatcatctggtTGCTTTAGGAAACA------AATCCGTGTACCAACTGTAGCCGAGTAGAATATATTAGTTGGTACACGAAGAAACTT-TTTTTTCAAATAGTTAAGTGTT----GTAGTGCTCATTAGGAG-GGGCATGCCTATGACGTCAAACCATTGTTTCATTAAT----
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     39953637 300 +  42888418 TAGGAATTAAACAAGTGTT---GCATGGATGC---ACAGTGCTATGGCGGAATCACGATTGTGACAGTGCATTCCGTGAACTTTTGGCTACTCGATCaccacaaagtcattccgtgttcgagctgcaagggacctcagaaatcatctggtTGCTTTGAGAAAcaaaatgtggtccgtgtaccaactgtggccgaggagaatatattcgttggtacacgaagaaacttcttttttcaaataggtaagtgtc----gtagtgctcattaggag-gggaatgcctatcacgtcaaaccattgtttcattaatgt--
i aotNan1.NW_018505940v1    I 5 I 346
s otoGar3.GL873548            9485008 300 -  19069880 TGTGTGTTCAGCAAGTGTTGACGGATGAATGCATGATGGCGCTATGGCAATGTCAGAATTTTGACAGTGCCTGCCGAGAACTTTCGGTT-CACTTTCCtcacaaaatctttcagtgtttgtgttgcaaaggacctcagaaatcatctggtGGCTTTGAGAAACa-aatgtggtccgtatacctgtggcggcctgggagatcatattagttggtatataa----acgtctttactttgatagttacgtgtttacgttaacgtgtattaggggtggaaacgcct-----gtcaaaccattgcttcactgat--gt
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391077  75 -   1458659 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=204960.000000
s hg38.chr15_KI270850v1_alt    303983 57 +    430880 tacttcttaggtcaaataaaaagtggc------aaaaaa-caagtgtatttcaagaaaagtgtt
s gorGor5.CYUI01015556v1        11403 58 -   1709092 ttcttcttaggtcaaataaaaagtggc------aaaaaaacaagtgtatttcaagaaaagtgtt
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107058606 57 - 169600520 TATTTCTTAGGTCAAATAAAAAGTGGC------AAAAAA-CAAGTGTACTTCAAGAAAAATGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65414079 57 + 171882078 tatttcttaggtcaaataaaaagtggc------aaaaaa-caagtgtacttcaagaaaaatgtt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        63055 57 +   6271500 tatttcttaggtcaaataaaaagtgtc------aaaaaa-taagtatatttcaagaaaaatgtt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        57990 57 -   5160157 tatttcttaggtcaaataaaaagtggc------aaaaaa-caagtgtacttcaagaaaaatgtt
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3894801 57 +  24206276 tatttcttaggtcaaataaaaagtggc------aaaaaa-caagtgtacttcaagaaaaatgtt
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3839408 57 -   4111199 TATTTCTTAGGTCAAATAAAAAGTGGC------AAAAAA-CAAGTGCACTTCAAGAAAAATGTT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18228109 48 + 132174527 ----------gtcaaataaaaagtggc-----aaaaaaa-aaagtgtacttcaaaaaaagtgtt
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           49719402 53 +  54856640 ----------GTCAAATAAAAAGTGGCCAAAAAAAAAAA-AAAATGTACTTCAAAAAGAGTGTT
i saiBol1.JH378108          C 0 N 0
s otoGar3.GL873548            9485308 55 -  19069880 tatttctcaggtcaagaagaaagttgt-----aagaaaa-aaaaagtact---agaaaaatatt
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39953937 346 +  42888418 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=101237.000000
s hg38.chr15_KI270850v1_alt    304040 37 +    430880 aagtgaaACTTGAGACACtttatatgcagttcaagaa
s gorGor5.CYUI01015556v1        11461 37 -   1709092 aagtaaaACTTGAGACACtttatatgcaattcaagaa
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107058663 37 - 169600520 AAGTAAAAATTGAGACACtttatatgcagttcaagaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65414136 37 + 171882078 aagtaaaaattgagacactttatatgcagttcaagaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        63112 37 +   6271500 aagtaaaAATTGAGACACTTTATATGCAGTTCAAGAA
i macNem1.NW_012011056v1    C 0 I 3207
s cerAty1.NW_012001384v1        58047 37 -   5160157 aagtaaaaattgagacactttatatgcagttcaagaa
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3894858 37 +  24206276 aagtaaaaaatgagacactttatatgcagttcaagaa
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3839465 37 -   4111199 AAGTAAAGATTGAGACACtttatatgcagttcaagaa
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18228157 14 + 132174527 aagtaaaAACT------CTT-----------------
i calJac3.chr10             C 0 C 0
s otoGar3.GL873548            9485363 33 -  19069880 ----aataatagAAACACtttatagacagttcaagaa
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39953937 346 +  42888418 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=58607.000000
s hg38.chr15_KI270850v1_alt    304077 39 +    430880 tgtaaaatactagttgacagtgcttgaagtaagaacagt-
s gorGor5.CYUI01015556v1        11498 39 -   1709092 tgtaaaatactagttgacagtgattgaagtaagaacagt-
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107058700 38 - 169600520 cgtgcaaaactagttgacagtgactgaagtaaggacag--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65414173 38 + 171882078 cgtgcaaaactagttgacagtgactgaagtAaggacag--
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1        58084 38 -   5160157 cgtgcaaaactagttcacagtgactgaagtAagaacag--
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3894895 38 +  24206276 cgtgcaaaactagttgacagtgactgaagtAagaacag--
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3839502 38 -   4111199 cttgcaaaactagttgacagtgactgaagtaagaacag--
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18228171 12 + 132174527 ----------------------CTTGAAGT----ACAC--
i calJac3.chr10             C 0 C 0
s otoGar3.GL873548            9485396 32 -  19069880 catgcaaaact-------gatgattgaagtaaaaacag-t
i otoGar3.GL873548          C 0 I 462
e aotNan1.NW_018505940v1     39953937 346 +  42888418 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=3945.000000
s hg38.chr15_KI270850v1_alt    304116 4 +    430880 tggt
s gorGor5.CYUI01015556v1        11537 4 -   1709092 tggt
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107058738 4 - 169600520 tggt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65414211 4 + 171882078 tggt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1        58122 4 -   5160157 tggt
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3894933 4 +  24206276 tggt
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3839540 4 -   4111199 tgtt
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18228183 1 + 132174527 T---
i calJac3.chr10             C 0 C 0
e aotNan1.NW_018505940v1     39953937 346 +  42888418 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873548            9485428 462 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=382543.000000
s hg38.chr15_KI270850v1_alt    304120 170 +    430880 taggtaggaggagaagattattggctgggaaggaggaggagggaaccctctgtggtgctgattctgtattttgacctgggtgatggataacaaaag------tatgtacatcaataaaaaatacatccagtgcactttaga----ttagtgc-----------------------------------actttacACATTTTATACATGTATTTTT
s gorGor5.CYUI01015556v1        11541 169 -   1709092 taggtag-aggagaagattattggctgggaaggaggaggagggaaccctctgtggtgctgattctgtattttgacctgggtgatggataacaaaag------tatgtacatcagtaaaaaatacatccagtgcactttaga----ttagtgc-----------------------------------actttacACATTTTATACATGTATTTTT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107058742 168 - 169600520 taggtaggaggggacgattattgactgggaaggaagaggagggaa-cctctg-gttgctggttctgtattttgacctgggtgatggataacaaaag------tgtatacatgaaaaaaaaatacatccagtgcacttaaga----ttagtgc-----------------------------------actttacACATTTTAAACATGTATTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65414215 168 + 171882078 taggtaggaggggacgattattgactgggaaggaagaggagggaa-cctctg-gttgctggttctgtattttgacctgggtgatggataacaaaag------tgtatacatgaaaaaaaaatacatccagtgcacttaaga----ttagtgc-----------------------------------actttacACATTTTAAACATGTATTTTT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1        58126 168 -   5160157 taggtaggaggggacgattattgactgggaaggaagaggagggaa-cctctg-ggtgctagttctgtattttgacctgggtgatggataacaaaag------tgtatacatgaaaaaaaaatacatccagtgcacttaaga----ttagtgc-----------------------------------actttacACATTTTAAACATGTATTTTT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3894937 169 +  24206276 taggtaggaggggacgattattgactgggaaggaagaggagggaaccctctg-ggtgctggttctgtattttgacctgggtgatggataacaaaag------tgtatacatgaataaaaaatacatccagtgcacttaaga----ttagtgc-----------------------------------actttacACATTTTAAACATGTATTTTT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3839544 169 -   4111199 taggtaggaggggacgattattgactgggaaggaagaggagggaaccctctg-ggtgctggttctgtattttgacctgggtgatggataacaaaag------aatatacatgaataaaaaatacatccagtgcacttaaga----ttagtgc-----------------------------------attgtacACATTCTAAACATGTATTTTT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18228184 185 + 132174527 ------------------------TCAAggaggaggaggagagaaccctctggggtgctggttctgtattttgacctgggaggtggataacaaaag------catatacatgaatgaaaaatacatctagtgcactttacacgttttattgtTTTTCTTTTTTTATTTTTCTTTTCCACAGCCAGTAACTTTACACGTTTTAAACATGTATTTTT
i calJac3.chr10             C 0 I 542
s otoGar3.GL873548            9485890 166 -  19069880 tacctagaaggaggaggttattttct-ggaatgagcaggagggaagcctctgtggtgcccgttctatactttgctctgagcagtggatgacaaaggtattcttgtatacatctgataaaactagct---gtatacttaa-a----ttacttc-----------------------------------accttacACATTTTAAACACATT-----
i otoGar3.GL873548          I 462 C 0
e aotNan1.NW_018505940v1     39953937 346 +  42888418 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391077  75 -   1458659 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=146051.000000
s hg38.chr15_KI270850v1_alt    304290 79 +    430880 AATGTCAATTTTTTAAAAATCTGGTATGGAATATACCCCCACAACCCCCCCCCCCCAAAAAAAATGCAAAGATGCAAAT
s gorGor5.CYUI01015556v1        11710 77 -   1709092 AATGTCAATTTTTTACAAATCTGGTATGGGATATACCCCCACAACCCCCCCCCCCAAAAAAAA--GCAAAGATGCAAAT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107058910 73 - 169600520 AATGTCAATTTTTTA-AAATATAGTATGGGATATGCCCCCA-----CCCCACCCCCAAAAATAATGCAAAGATGCAAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65414383 73 + 171882078 AATGTCAATTTTTTA-AAATATAGTATGGGATATGCCCCCA-----CCCCACCCCCAAAAATAATGCAAAGATGCAAAT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1        58294 73 -   5160157 AATGTCAATTTTTTA-AAATATAGTATGGGATATGCCCCCA-----CCCCACCCCCCAAAATAATGCAAAGATGCAAAT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3895106 73 +  24206276 AATGTCAATTTTTTA-AAATATAGTATGGGATATGCCCCCA-----CCCCACCCCCAAAAATAATGCAAAGATGCAAAT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3839713 73 -   4111199 AATGTCAATTTTGAA-AAATCTAGTATGGGATATGCCCCCA-----CCCCACCCCCCAAAAAAATGCAAAGATGCAAAT
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18228911 61 + 132174527 AATGTCAGCTCTTAA-AAATCTGGCACGGGATACACC---------CCCCACCCAAAAAAAGAATGCCAAG--------
i calJac3.chr10             I 542 C 0
s otoGar3.GL873548            9486056 60 -  19069880 AATGTCAGTTGTTTA-AATCCAGGTACAGGATACGGC------------------CAAAAACAATGCAAAGATACAAAT
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39953937 346 +  42888418 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=384746.000000
s hg38.chr15_KI270850v1_alt    304369 109 +    430880 GACTGCCATTTGGGAAACACTGATCCAGGCAGGCTCACTAGCAGTGACCAAACACCTGAGAAAGGGTATTGTGAATACCTGATGTATGTGCCAGGAACTTCCATGGTTG
s gorGor5.CYUI01015556v1        11787 109 -   1709092 GACTGCCATTTGGGAAACACTGATCCAGGCAGGCTCACTAGCAGTGACCAAACACCTGAGAAAGGGTATTGTGAATACCTGATGTATGTGCCAGGAATTTCCGTGGTTG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107058983 109 - 169600520 AACTGTCATTTGGGAAACACTGATCCAGGCAGGCTCACTAGCAGTGACCAAACACCTGAGAAAGGGTATTGTGAATGCCTGATGTATGTACCAGGAACTTCCATTGCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65414456 109 + 171882078 AACTGTCATTTGGGAAACACTGATCCAGGCAGGCTCACTAGCAGTGACCAAACACCTGAGAAAGGGTATTGTGAATACCTGATGTATGTACCAGGAACTTCCATTGCTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1        58367 109 -   5160157 AACTGTCATTTGGGAAACACTGATCCAGGCAGGCTCACTAGCAGTGACCAAACACCTGAGAAAGGGTGTTGTGAATACCTGATGTATGTACCAGGAACTTCCATTGCTG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3895179 109 +  24206276 AACTGTCATTTGGGAAACACTGATCCAGGCAGGCTCACTAGCAGTGACCAAACACCTGAGAAAGGGTACTGTGAATACCTGATGTATGTACCAGGAACTTCCATTGCTG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3839786 109 -   4111199 GACTGTCATTTGGGAAACACTGATCCAGGCAGGCTCACTAGCAGTGACCAAACACCTGAGAAAGTGTATTGTGAATACCTGATGTGTGTACCAGGAACTTCCATCGCTG
i colAng1.NW_012116021v1    C 0 C 0
s calJac3.chr10              18228972 108 + 132174527 GACTGCCATTTGGGAAACACTGACGCAGGCAGGCTCAC-AGCAGTGACCAAATACCTGAGAAAGGGTATTATGAATACCTGATGTGTGTAACAAAAACTTCCATTGTTG
i calJac3.chr10             C 0 n 0
s aotNan1.NW_018505940v1     39954283 108 +  42888418 GACTGCCATTTGGGAAACACTGATGCAGGCAGGCTCAC-AGCAGTGACCAAATACCTGAGAAAGGGTATTGTGAATACCTGATGTGTGTAACAAAAACTTCCATTGTTG
i aotNan1.NW_018505940v1    I 346 C 0
s otoGar3.GL873548            9486116 109 -  19069880 GACTGACATTTTGGAAACCCTGATCCAGGCAAGCTCTTTCCCAGCTAAAGAATATCTGAGAGAGGGTATCGTGAGTATCTGGTGTGTGTTCCAGGTACTTCCATTGTTG
i otoGar3.GL873548          C 0 C 0
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391077  75 -   1458659 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=107797.000000
s hg38.chr15_KI270850v1_alt    304478 40 +    430880 AATAGCTCCAAATCTCAGAAATGCTCCTAACCTCGTGTTG
s gorGor5.CYUI01015556v1        11896 40 -   1709092 AATAGCTCCAAATCTCAGAAATGCTCCTAACCTAGTGTTG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107059092 40 - 169600520 AATAGCTCCAAATCTCAGAAATGCTCCTAAGCTAATGTTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65414565 40 + 171882078 AATAGCTCCAAATCTCAGAAATGCTCCTAAGCTAATGTTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1        58476 40 -   5160157 AATAGTTCCAAATCTCAGAAATGCTCCTAAGCTAATGTTG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3895288 40 +  24206276 AATAGCTCCAAATCTCAGAAATGCTCCTAAGCTAATGTTG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3839895 40 -   4111199 AATAGCTCCAAATCTCAGAAATGCTCCTGACCTGATGTTG
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1     39954391 35 +  42888418 AATAGCTCCAAATCTCAGAAATGCTCCTAA-----TGTTG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9486225 40 -  19069880 AATAGCTCTAAATCTTTGAAATGCTCCTAgctgggtgcag
i otoGar3.GL873548          C 0 I 285
e calJac3.chr10              18229080  0 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=55488.000000
s hg38.chr15_KI270850v1_alt    304518 48 +    430880 AGCTCTGGTGCATAGATATATTTTCTTTTCtttctttccttttttttt
s gorGor5.CYUI01015556v1        11936 48 -   1709092 AGCTCTGGTGCATAGATATATTTTCTTTTCTttctttctttttttttt
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107059132 48 - 169600520 AGCTCTGGTGCGTACATATATTCTCTTCTTCTTCtttttttttttttt
i rheMac8.chr7              C 0 I 7
s macFas5.chr7               65414605 34 + 171882078 AGCTCTGGTGCGTACATATAttctcttcttcttc--------------
i macFas5.chr7              C 0 I 2
s cerAty1.NW_012001384v1        58516 48 -   5160157 AGCTCTGGTGCGTACATCTATTCTCTTCTTCTTCTTTTTTTTTTTTTT
i cerAty1.NW_012001384v1    C 0 M 601
s chlSab2.chr29               3895328 36 +  24206276 AGCTCTGGTGCGTACATATAttctcttcttttcttt------------
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3839935 28 -   4111199 AGCTCTGGTGCATACATATAttctcttt--------------------
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1     39954426 36 +  42888418 AGCTCTGGTGCTCACACtttttttttgtttcttttt------------
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18229080  0 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9486265 285 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=481234.000000
s hg38.chr15_KI270850v1_alt    304566 244 +    430880 tttttttttt---gaggcagagtttcactcttgttgcccaggctggagtgcaatggcacgatatcagctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagctgcccgagtagctggaattacaggcacatgccaccaattccagctaa-ttttttgtatttttagtagagacagggtttcactatgttggccaggctggtctcgaactcct------------------------------------gacttcaggtgatccacccacc
s gorGor5.CYUI01015556v1        11984 247 -   1709092 tttttttttttttgaggcagagtttcactcttgttgcccaggctggagtgcaatggcacgatatcagctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagctgcccgagtagctggaattacaggcacatgccaccaattccagctaa-ttttttgtatttttagtagagacggggtttcaccatgttggccaggctggtctcgaactcct------------------------------------gacttcaggtgatccacccacc
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107059187 242 - 169600520 tttttttttg---gaaacaaaatttcactc--cttgcccaggctggagtgcaatggtccgatatcagctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagctgcccgagtagctggaattacaagcacatgccaccatgcccggctaa-tgtattgtatttttagtagaaatggggtttcaccatgttgactaggctggtctcgaactcct------------------------------------gacttcaggtgatccacctgcc
i rheMac8.chr7              I 7 C 0
s macFas5.chr7               65414641 242 + 171882078 tttttttttg---gaagcggagtttcactc--gttgcccaggctggagtgcaatggtccgatatcagctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagctgcccgagtagctggaattacaagcacacgccaccatgcccggctaa-tgtattgtatttttagtagaaatggggtttcaccatgttgactaggctggtctcgaactcct------------------------------------gacttcaggtgatccacctgcc
i macFas5.chr7              I 2 I 291
s cerAty1.NW_012001384v1      4979180 280 +   5160157 tttttttttt---gaggcagagtttctctcttgttgcccaggctggagtgcaatggtgcgatctcagctcactgtaacctccacttccagggttcaaacgattctcctgcctcagcctcccaagtaactgggattacaggcatccaccaccacacctggttaa-ttttttttatttttagtagagacggtgtttcactatgttggccaggctggtctcaaactcctctatttcccccacttcaactcaggaagtggggtttagtcctcaggtgatccacccacc
i cerAty1.NW_012001384v1    n 0 C 0
s chlSab2.chr29               3895364 241 +  24206276 tttttttttg---gaagcagagtttcactc--gttgcccaggctgga-tgcaatggtccgatatcagctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagctgcccgagtggctggaattacaagcacatgccaccatgcccggctaa-tgtattgtatttttagtagaaatggggtttcaccatgttgactaggctggtctcgaactcct------------------------------------gacttcaggtgatccacctgcc
i chlSab2.chr29             C 0 I 289
s colAng1.NW_012116021v1      3839963 240 -   4111199 tttttttttg---gaggcagagtttcactc--gttgcccaggctggagtgc-atggggcggtatcagctcactgcaacctccacctcccaggatgaagcaattctcctgcctcagctgcccgagtagctggaattacaagcacacaccaccatgcccggctaa-ttttttgtatttttagtggagatcg-gtttcaccatgttgaccaggctggtcttgaactcct------------------------------------gacttcaggtgatccacctgcc
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1     39954462 223 +  42888418 tttttttttt---g-------------ctcttgttgcccaggctggaatgcaatgaagcgatcttggctcactg---------cctcccagattcaagcaattctcctgcctcacccacccaaatagctgggattacaggagcacaccaccacgccaggttaatttttttgtattttttgtggagacgaggtctcaccatgttggccaagctggtctcgaactcct------------------------------------gacctcaggtgatccacctgcc
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18229080   0 + 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873548            9486265 285 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391077  75 -   1458659 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=53817.000000
s hg38.chr15_KI270850v1_alt    304810 22 +    430880 tcggcctcccaaagtgctggga
s gorGor5.CYUI01015556v1        12231 22 -   1709092 tcggcctcccaaagtgctggga
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107059429 22 - 169600520 tcggcctcccaaagtgctagga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65415174 22 + 171882078 tcggcctcccaaagtgctggga
i macFas5.chr7              I 291 C 0
s cerAty1.NW_012001384v1      4979460 22 +   5160157 ttggcctcccaaagtgctggga
i cerAty1.NW_012001384v1    C 0 I 62
s chlSab2.chr29               3895894 22 +  24206276 tcggcctcccaaagtgctggga
i chlSab2.chr29             I 289 C 0
s colAng1.NW_012116021v1      3840203 22 -   4111199 tcggcctcccaaagcgctagga
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1     39954685 22 +  42888418 tcagcctcccaatgtgctggga
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18229080  0 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9486265 285 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=7833.000000
s hg38.chr15_KI270850v1_alt    304832 4 +    430880 ttac
s gorGor5.CYUI01015556v1        12253 4 -   1709092 ttac
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107059451 4 - 169600520 ttac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65415196 4 + 171882078 ttac
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3895916 4 +  24206276 ttac
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3840225 4 -   4111199 ttac
i colAng1.NW_012116021v1    C 0 I 326
s aotNan1.NW_018505940v1     39954707 4 +  42888418 ttac
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18229080 0 + 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873548            9486265 285 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e cerAty1.NW_012001384v1      4979482 62 +   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=1365.000000
s hg38.chr15_KI270850v1_alt    304836 1 +    430880 a
s gorGor5.CYUI01015556v1        12257 1 -   1709092 a
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107059455 1 - 169600520 a
i rheMac8.chr7              C 0 I 336
s macFas5.chr7               65415200 1 + 171882078 a
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3895920 1 +  24206276 a
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018505940v1     39954711 1 +  42888418 a
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18229080 0 + 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873548            9486265 285 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3840229 326 -   4111199 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e cerAty1.NW_012001384v1      4979482 62 +   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=100.000000
s hg38.chr15_KI270850v1_alt    304837 1 +    430880 g
s gorGor5.CYUI01015556v1        12258 1 -   1709092 g
i gorGor5.CYUI01015556v1    C 0 C 0
e aotNan1.NW_018505940v1     39954712 0 +  42888418 C
e calJac3.chr10              18229080 0 + 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873548            9486265 285 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3840229 326 -   4111199 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e chlSab2.chr29               3895921 0 +  24206276 C
e cerAty1.NW_012001384v1      4979482 62 +   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e macFas5.chr7               65415201 0 + 171882078 C
e rheMac8.chr7              107059456 336 - 169600520 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=6586.000000
s hg38.chr15_KI270850v1_alt    304838 17 +    430880 gcttacaggtgtgagcc
s gorGor5.CYUI01015556v1        12259 17 -   1709092 gcttacaggtgtgagcc
i gorGor5.CYUI01015556v1    C 0 C 0
s macFas5.chr7               65415201 10 + 171882078 -------ggcatgagcc
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3895921 10 +  24206276 -------ggcatgagcc
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018505940v1     39954712 10 +  42888418 -------ggtgtgagcc
i aotNan1.NW_018505940v1    C 0 I 36
s otoGar3.GL873548            9486550 17 -  19069880 GCTCACATACATTTTCT
i otoGar3.GL873548          I 285 C 0
e calJac3.chr10              18229080  0 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3840229 326 -   4111199 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e cerAty1.NW_012001384v1      4979482 62 +   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e rheMac8.chr7              107059456 336 - 169600520 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=1788.000000
s hg38.chr15_KI270850v1_alt    304855 11 +    430880 tcagcacccaa-
s gorGor5.CYUI01015556v1        12276 11 -   1709092 tcagcacccaa-
i gorGor5.CYUI01015556v1    C 0 C 0
s macFas5.chr7               65415211 11 + 171882078 cctgtgcccag-
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3895931 11 +  24206276 cctgtgcccag-
i chlSab2.chr29             C 0 C 0
s otoGar3.GL873548            9486567 11 -  19069880 -TAGTTCCCCCT
i otoGar3.GL873548          C 0 C 0
e aotNan1.NW_018505940v1     39954722 36 +  42888418 I
e calJac3.chr10              18229080  0 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3840229 326 -   4111199 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e cerAty1.NW_012001384v1      4979482 62 +   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e rheMac8.chr7              107059456 336 - 169600520 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=15004.000000
s hg38.chr15_KI270850v1_alt    304866 13 +    430880 ccCAGAATGGCTT
s gorGor5.CYUI01015556v1        12287 13 -   1709092 ccCAGAATGGCTT
i gorGor5.CYUI01015556v1    C 0 C 0
s macFas5.chr7               65415222 13 + 171882078 ccCAGAATGGCTT
i macFas5.chr7              C 0 I 8
s chlSab2.chr29               3895942 13 +  24206276 ccCAGAATGGCTT
i chlSab2.chr29             C 0 I 6
s aotNan1.NW_018505940v1     39954758 13 +  42888418 CACAGAATGGCTT
i aotNan1.NW_018505940v1    I 36 I 1
s otoGar3.GL873548            9486578 13 -  19069880 TACAGAATGATTT
i otoGar3.GL873548          C 0 C 0
e calJac3.chr10              18229080  0 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3840229 326 -   4111199 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e cerAty1.NW_012001384v1      4979482 62 +   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e rheMac8.chr7              107059456 336 - 169600520 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=7280.000000
s hg38.chr15_KI270850v1_alt    304879 9 +    430880 aaaaaaaaa
s gorGor5.CYUI01015556v1        12300 9 -   1709092 AAAAAAAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107059792 8 - 169600520 -aaaaaaaa
i rheMac8.chr7              I 336 I 1
s macFas5.chr7               65415243 8 + 171882078 -aaaaaaaa
i macFas5.chr7              I 8 I 1
s chlSab2.chr29               3895961 8 +  24206276 -aaaaaaaa
i chlSab2.chr29             I 6 C 0
s aotNan1.NW_018505940v1     39954772 8 +  42888418 TAAAAGAA-
i aotNan1.NW_018505940v1    I 1 C 0
e calJac3.chr10              18229080 0 + 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873548            9486591 0 -  19069880 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3840229 326 -   4111199 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e cerAty1.NW_012001384v1      4979482 62 +   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=7644.000000
s hg38.chr15_KI270850v1_alt    304888 4 +    430880 aaaa
s gorGor5.CYUI01015556v1        12309 4 -   1709092 AAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107059801 4 - 169600520 aaaa
i rheMac8.chr7              I 1 C 0
s macFas5.chr7               65415252 4 + 171882078 aaaa
i macFas5.chr7              I 1 C 0
s cerAty1.NW_012001384v1      4979544 4 +   5160157 AAAA
i cerAty1.NW_012001384v1    I 62 C 0
s chlSab2.chr29               3895969 4 +  24206276 aaaa
i chlSab2.chr29             C 0 C 0
s aotNan1.NW_018505940v1     39954780 4 +  42888418 AAAA
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18229080 0 + 132174527 I
e dasNov3.JH572216             208464 0 -   1040364 I
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873548            9486591 0 -  19069880 C
e panPan2.chr15              76637185 24711 +  99763055 I
e colAng1.NW_012116021v1      3840229 326 -   4111199 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=208874.000000
s hg38.chr15_KI270850v1_alt    304892 76 +    430880 aaaaaaaaaGGCCAAGCATGCCCAGTTCTTCATGTGAAATTATTTCTGTATCACCTCATCATGCTGCTCACCCTCT
s gorGor5.CYUI01015556v1        12313 70 -   1709092 AAa------ggccaagcatgcccagttcttcatgtgaaattatttctgtatcacctcatcatgctgctcaccctct
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107059805 76 - 169600520 aaaaaaaaaGGTCAAGCATGCCCAGTTCTTCATGTGAAATTATTTCTGTATCACCTTATCATGCTGCTCACCCTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65415256 76 + 171882078 aaaaaaaaaGGTCAAGCATGCCCAGTTCTTCATGTGAAATTATTTCTGTATCACCTTATCATGCTGCTCACCCTCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      4979548 76 +   5160157 AAAAAAAAAGGTCAAACATGCCCAGTTGTTGATGTGAAAATATTTCCGTATCACTTCATCGTGCTGCTCACCCTCT
i cerAty1.NW_012001384v1    C 0 I 155
s chlSab2.chr29               3895973 76 +  24206276 aaaaaaaaaGGTCAAGCATGCCCAGTTCTTCATGTGAAATTATTTCTGTATCACCTCATCATGCTGCTCACCCTCT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3840555 75 -   4111199 AAAAAAAAAAGTCAAGCATGCCCAgttcttcatgt-aaattatttctgtatcacctcatcatgctgctcaccctct
i colAng1.NW_012116021v1    I 326 C 0
s aotNan1.NW_018505940v1     39954784 72 +  42888418 ----AAAAAGGCCAAGCATGCCCAGTTCTTCATGTGAAATTATTTCTGTATCACCTCATCATGCTGCTTACCCTCT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9486591 75 -  19069880 -TTTTAAAAGGCTAAACATGCCCAGTTCTCCATGTGAAATTATTTCCATATCACCTTATCCTCATGCTCACCCTCT
i otoGar3.GL873548          C 0 C 0
e calJac3.chr10              18229080  0 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=85836.000000
s hg38.chr15_KI270850v1_alt    304968 33 +    430880 TCCACTGTT--CTCTAATCTG-TCCTTGTTGATATT
s gorGor5.CYUI01015556v1        12383 32 -   1709092 tccactgtt--ctctaatctg-tc-ttgttgatatt
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107059881 33 - 169600520 TCCACTGTT--CTCTAATCTG-TCCTTGTTGATATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65415332 33 + 171882078 TCCACTGTT--CTCTAATCTG-TCCTTGTTGATATT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1        59177 33 -   5160157 TCCACTGTT--CT-TAATCTGCTCCTTGTTGATATT
i cerAty1.NW_012001384v1    M 601 C 0
s chlSab2.chr29               3896049 33 +  24206276 TCCACTGTT--CTCTAATCTG-TCCTTGTTGATATT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3840630 33 -   4111199 tctgctgtt--ctctaatctg-tccttgttggtatt
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1     39954856 33 +  42888418 TCCACTGTT--CTCTAATCTG-TCCTTGTTGATATT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9486666 35 -  19069880 TCCACACTCAACTCTAATCTA-TCCTTGTCAATATT
i otoGar3.GL873548          C 0 C 0
e calJac3.chr10              18229080  0 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391077 75 -   1458659 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=68428.000000
s hg38.chr15_KI270850v1_alt    305001 22 +    430880 TAAAAGCTGGCACAAggccggg
s gorGor5.CYUI01015556v1        12415 22 -   1709092 taaaagctggcacAAggccggg
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107059914 22 - 169600520 TAAAAGCTGGCACAAggccagg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65415365 22 + 171882078 TAAAAGCTGGCACAAggccagg
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1        59210 21 -   5160157 TAAAAGCTGCCACAC-GCGCgg
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3896082 22 +  24206276 TAAAAGCTAGCACAAggccggg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       391152 22 -   1458659 TAAAAGCTGGCACAAggccggg
i manLeu1.NW_012105520v1    I 75 C 0
s colAng1.NW_012116021v1      3840663 22 -   4111199 taaaagctggcacAAggccagg
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1     39954889 22 +  42888418 TAAAAGCTGGCACAAAgctgga
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873548            9486701 22 -  19069880 TAAAAGCTGGCATGGAGACAAG
i otoGar3.GL873548          C 0 n 0
e calJac3.chr10              18229080  0 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e panPan2.chr15              76637185 24711 +  99763055 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=112986.000000
s hg38.chr15_KI270850v1_alt    305023 40 +    430880 cgcagtg-ctcacacctgtaatcccagcactttgggaggct
s gorGor5.CYUI01015556v1        12437 41 -   1709092 cgcagtggctcacacctgtaatcccagcactttgggaggct
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7              107059936 41 - 169600520 cacagcggctcacacctgtaatcccagcactttgggaggct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65415387 41 + 171882078 cacagcggctcacacctgtaatcccagcactttgggaggct
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1        59231 39 -   5160157 cgcagcggctctcacctgctaatccagcactt--ggaggct
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3896104 41 +  24206276 tgcagtggctcacacctgtaatcccagcactttgggaggct
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       391174 41 -   1458659 cgcagcggctcacacctgtaatcccagcactttgggaggct
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3840685 41 -   4111199 cacagcggctcacacctgtaatcccagcactttgggaggct
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1     39954911 41 +  42888418 tgtgatggctcacacctgtaatctgagcactttgggaggct
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18229080  0 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9486723  0 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e nomLeu3.chr6               19259148 7475 - 121039945 I

a score=208820.000000
s hg38.chr15_KI270850v1_alt    305063 59 +    430880 gaggaggg-tagatcactagagcccaggag-ttcgagaccagcctgggctacaggtgaaac
s gorGor5.CYUI01015556v1        12478 59 -   1709092 gaggaggg-tagatcactagagcccaggag-ttcgagaccagcctgggctacaggtgaaac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19266623 59 - 121039945 gaggaggg-tagatcactcaagcccaggag-ttcgagaccagcctgggctacaggtgaaac
i nomLeu3.chr6              I 7475 C 0
s rheMac8.chr7              107059977 59 - 169600520 gaggagga-taaatcactcgagtccaggag-ttcgagaccagcctgggctacaggggaaac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65415428 59 + 171882078 gaggagga-taaatcactcgagtccaggag-ttcgagaccagcctgggctacaggggaaac
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1        59270 61 -   5160157 gaggaggattaaatcactcaagtccaggagcttcgagaccagcctgggctacaggggaaac
i cerAty1.NW_012001384v1    C 0 I 245
s chlSab2.chr29               3896145 59 +  24206276 gaggagga-taaatcactcgagtccaggag-ttcgagaccagcctgggctacaggggaaac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       391215 59 -   1458659 gaggagga-taaatcactcgagtccaggag-ttcgagaccagcctgggctacaggggaaac
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3840726 59 -   4111199 gaggaggg-taaatcagtcaagtccaggag-ttcaagaccagcctgggctacaggtgaagc
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1     39954952 56 +  42888418 ---gaggg-ctgagcactccagcccaggat-ttcgagaccagcctgggcaacaggtgaaac
i aotNan1.NW_018505940v1    C 0 C 0
e calJac3.chr10              18229080  0 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9486723  0 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=328309.000000
s hg38.chr15_KI270850v1_alt    305122 87 +    430880 cccatctgtactaaaagatacaaaaattagccaaacgtggtagcccaaatcccagctacttgggagaccgatgtagaaggatcgctt
s gorGor5.CYUI01015556v1        12537 87 -   1709092 cccatctgtactaaaagatacaaaaattagcccaacgtggtagcccaaatcccagctacttgggagaccgatgtagaaggatcgctt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19266682 87 - 121039945 cccgtctgcactaaaagatacaaaaattagccaaacgtggtagcccaaatcccagctacttgggaggccgaggtagaaggattgctt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107060036 87 - 169600520 cccgtctgtactaaaagatacaaaaattagccaagcatggtagcccaaaccccagctacttgggaggccgaggtagaaggatcactt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65415487 87 + 171882078 cccgtctgtactaaaagatacaaaaattagccaagcatggtagcccaaatcccagctacttgggaggccgaggtagaaggatcactt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      4979779 87 +   5160157 cccatctgtacctaaaaatacaaaaattagccaagcatggtagcgcagatctcagctacttgggaggccgagctggaaggattgctt
i cerAty1.NW_012001384v1    I 155 C 0
s chlSab2.chr29               3896204 87 +  24206276 cccgtctgtactaaaagatacaaaaattagccaagcatggtagcccaaatcccagctacttgggaggccgaggtagaaggatcactt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       391274 87 -   1458659 cccgtctgtactaaaagatacaaaaattagccaagcatggtagcccaaatcccagctacttgcgaggccgaggtagaaggatcactt
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3840785 87 -   4111199 cccgtctgtaccaaaaaatacaaaaattagccaagcatggtagcccaaatcccagctacttgggaggccgaggtagaaggatcactt
i colAng1.NW_012116021v1    C 0 C 0
s aotNan1.NW_018505940v1     39955008 87 +  42888418 cctatctgtactaaaaaatacaaaaattagccaagggtggtagcccaaatcccagctacttgggagactgaggtagaaggatcactt
i aotNan1.NW_018505940v1    C 0 N 0
e calJac3.chr10              18229080  0 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9486723  0 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=97346.000000
s hg38.chr15_KI270850v1_alt    305209 34 +    430880 gagcccaggagg-agaggttgca-tgagccAAATCA
s gorGor5.CYUI01015556v1        12624 34 -   1709092 gagcccgggagg-agaggttgca-tgagccAAATCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19266769 36 - 121039945 gagcccgggaggcagaggtagcagtgagccAAATCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107060123 36 - 169600520 gagccggtgaggcagaggttgcagtgagccAAATCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65415574 36 + 171882078 gagccggtgaggcagaggttgcagtgagccAAATCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1      4979866 36 +   5160157 gagcccgggaggcagaggttgcagtgagccaaatca
i cerAty1.NW_012001384v1    C 0 n 0
s chlSab2.chr29               3896291 36 +  24206276 gagccggtgaggcagaggttgcagtgagccAAATCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       391361 36 -   1458659 gagctggtgaggcagaggttgcagtgagccAAATCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3840872 36 -   4111199 gagcccgtgaggcagaggttgcagtgagccAAATCA
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10              18229080  0 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9486723  0 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=239559.000000
s hg38.chr15_KI270850v1_alt    305243 106 +    430880 GCAGGGCAGCTGCAGAGTGGGGTGCAAGGTCCTCAACCCAGAGGTTCCCTAGGCCCCACTTGCCCCAGCTCATGAGAGCCTGGTTCTGAGCTCTGCCAGGACTGGG
s gorGor5.CYUI01015556v1        12658 106 -   1709092 GCAGGGCAGCTGCAGAGTGGGGTGCAAGGTCCTCAACCCAGAGGTTCCCTAGGCCCCACTTGCCCCAGCTCATGAGAGCCTGGTTCTGAGCTCTGCCAGGACTGGG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19266805 106 - 121039945 GCAGGGCAGCTGCAGAGTGAGATACAAGGTCCTCAACCCAGATGCTCCCTAGGCCCCACTTGCCCCAGCTCATGAGAGCCTGGTTCTGAGCTCTGCCAGGACGGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107060159 106 - 169600520 GCAGGGCAGTTGCAGAGTAGTACGCAAGATCTTCAACCCAGAGACTCCCTAGGCCCCACTTGCTCCAGCTCAAGAGAGCCTGGTTCTGAGGTATGCCAGGACTGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65415610 106 + 171882078 GCAGGGCAGTTGCAGAGTAGTACGCAAGATCTTCAACCCAGAGACTCCCTAGGCCCCACTTGCTCCAGCTCAAGAGAGCCTGGTTCTGAGGAATGCCAGGACTGGG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3896327 106 +  24206276 GCCGGGCAGTTGCAAAGTAGTATGCCAGATCCTCAACCCAGAGACTCCCTAGGCCCCACTTGCTCCAGCTCAAGAGAGACTGGTTCTGAGGTATGCCAGGACTGGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       391397 106 -   1458659 GCAGGGCAGTTGCAGAGTAGTACGCAAGATCTTCAACCCAGAGACTCCCTAGGCCTCACTTGCTCCAGCTCAAGAGAGCCTGGTTCTGAGGTCTGCCAGGACTGGG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3840908 106 -   4111199 GCAGGGCAGTTGCAGAGTAGTACTCAAGATCCTCAACCCAGAGGCTCCCTAGGACCCACTTGCCCCAGCTCATGAGGGCCTGGTTCTGAGGTCTGCCAGGACCGGG
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10              18229080   0 + 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873548            9486723   0 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1      4979902   0 +   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=71028.000000
s hg38.chr15_KI270850v1_alt    305349 27 +    430880 GCTCAGCACTGCCCATGAAAACAGGCG
s gorGor5.CYUI01015556v1        12764 27 -   1709092 GCTCAGCACTGCCCATGAAAACAGGCG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19266911 27 - 121039945 ACTCAGCACTGCCCATGAAAACGGGCG
i nomLeu3.chr6              C 0 I 319
s rheMac8.chr7              107060265 27 - 169600520 GCTTAGCGCTGCCCATGGAAACAGTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65415716 27 + 171882078 GCTTAGCGCTGCCCATGGAAACAGTCA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1        59576 27 -   5160157 GCTCAGCGCTGCCCATGCGAACAGTCG
i cerAty1.NW_012001384v1    I 245 C 0
s chlSab2.chr29               3896433 27 +  24206276 GCTTAGCACTGCCCATGGAAACAGTCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       391503 27 -   1458659 GCTTAGCGCTGCCCATGGAAACAGTCA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3841014 27 -   4111199 GCTCAGCGCCGCCCTTGGAAACAGTGG
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10              18229080  0 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9486723  0 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=287951.000000
s hg38.chr15_KI270850v1_alt    305376 92 +    430880 TGGCAGGGAAGAAAATCATAACCAAATATTTGTAGTCACCTCTCTCCTCCCTT-CTGGAAAGGGAGGTTCCCAGGTTTGTGGGCTCTTTGCCT
s gorGor5.CYUI01015556v1        12791 92 -   1709092 TGGCAGGGAAGAAAATCATAACCAAATATTTGTAGTCACCTCTCTCCTCCCTT-CTGGAAAGGGAGGTTCCCAGGTTTGTGGGCTCTTTGCCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19267257 92 - 121039945 TGGCAGGGAAGAAAATCACAACCAAATATTTGTAGTCCCCTCTCTCTTCCCTT-CTGGAAAGGGAGGTTCCCTGGTTTGTGGTCTCTTTGCCT
i nomLeu3.chr6              I 319 C 0
s rheMac8.chr7              107060292 92 - 169600520 TGCCAGGGAAGAAAATCATAACCATATATTTGTAGTCACCTCTCTCCTCCCTT-CTGGAAAGGGAGGTTCCCTGGTTTGTGGGCTCTTTGCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65415743 92 + 171882078 TGCCAGGGAAGAAAATCATAACCATATATTTGTAGTCACCTCTCTCCTCCCTT-CTGGAAAGGGAGGTTCCCTGGTTTGTGGGCTCTTTGCCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1        59603 93 -   5160157 TGCCAGGGAAGAATATCATAACCATATATTTGTAGTCACCCTTCTCCTCCCTTGCTGGAAAGGGAGGTTCCCTGGTTTGTGGGCTCTTTGCCT
i cerAty1.NW_012001384v1    C 0 I 201
s chlSab2.chr29               3896460 92 +  24206276 TGCCAGGGAAGAAAATCATAACCACATATTTGTAGtcacctctctcctccctt-ctggaaagggaggttccctggtttgtgggctctttgcct
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       391530 92 -   1458659 TGCCAGGGAAGAAAATCATAACCATATATTTGTAGTCACCTCTCTCCTCCCTT-CTGGAAAGGGAGGTTCCCTGGTTTGTGGGCTCTTTGCCT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1      3841041 92 -   4111199 TGCCAGGGAAGAAACTCATAACCATATATTTGTAGTCACCTCTCTCCTCCTTT-CTGGAAAGGGAGGTTCCCTGGTCTGTGGGCTCTTTGCCT
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10              18229080  0 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9486723  0 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=44163.000000
s hg38.chr15_KI270850v1_alt    305468 17 +    430880 CCTGGACATTATTGTGT
s gorGor5.CYUI01015556v1        12883 17 -   1709092 CCTGGACATTATTGTGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19267349 17 - 121039945 CCTGGACATTATTGTAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107060384 17 - 169600520 CCTGGACATTATTGTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65415835 17 + 171882078 CCTGGACATTATTGTGT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3896552 17 +  24206276 cctggacattattgtgt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       391622 17 -   1458659 CCTGGACATTATTGTGT
i manLeu1.NW_012105520v1    C 0 M 1002
s colAng1.NW_012116021v1      3841133 17 -   4111199 CCTGGACATTATTGTGT
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10              18229080  0 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9486723  0 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e cerAty1.NW_012001384v1        59696 201 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=269414.000000
s hg38.chr15_KI270850v1_alt    305485 149 +    430880 AGTGAAGGGAGAAAGGTTGAGATGCAGAGTTGGAGAAACTAAGAGAGGCCGAACTGGTCCATTTGAGGAAAGATGACTGATCCCAGAAGGGGAGGAGGGGACACCCTGGGGAAGCAGGGGACTTCCCACGTGGTCCTAGAAGGGGAGGG
s gorGor5.CYUI01015556v1        12900 149 -   1709092 AGTGAAGGGAGAAAGGTTGAGATGCAGAGTTGGAGAAACTAAGAGAGGCCGAACTGGTCCATTTGAGGAAAGATGACTGATCCCAGAAGGGGAGGAGGGGACACCCTGGGGAAGCAGGGGGCTTCCCAGGTGGTCCAAGAAGGGGAGGG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19267366 149 - 121039945 AGTGAAGGGAGAAAGGTTGAGATGCAGAGTTGCAGAAACTAAGAGAGGCCAAACTGGTCCATTTGAGGAAAGATGAGTGATCCCAGGAGGGGAGGAGGGGACACCCCGGGGAAGCGGGGGGCTTCCCAGGTGGTCCAAGAAGCAGAGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107060401 149 - 169600520 AGTGAAGGAAGAAAGGTTGAGATGCAGAGTTGGAGAAACTAAGAGAGGCCAAACTGCTCCATTTGAGGAAAGATCAGGGATCCCAGGAGGGAAGAAGGGGACACCCTGGGGAATCAGGGGGCTTCCCAGGTGGTCCAAGAAGGGGAGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65415852 149 + 171882078 AGTGAAGGAAGAAAGGTTGAGATGCAGAGTTGGAGAAACTAAGAGAGGCCAAACTGCTCCATTTGAGGAAAGATCAGGGATCCCAGGAGGGAAGAAGGGGACACCCTGGGGAATCAGGGGGCTTCCCAGGTGGTCCAAGAAGGGGAGGG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29               3896569 149 +  24206276 agtgaaggaagaaaggttgagatgcagagttggagaaactaagagaggccaaactgctccatttgaggaaagatcagggatcccaggaggggacgaggggacaccctggggaaccagggggcttcccaggtggtccaagaaggggaggg
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3841150 149 -   4111199 AGTGAAGGAAGAAAGGTTGAGACGCGGAGTTGGAGAAACTAAGAGAGGCCAAACTGGTCCATTTGAGGAAAGATCAGGGATCCCAGGAGGGGAGGAGGGGACACCCTGGGGAACCAGGGGGCTTCCCAGGTGGTCCAAGAAGGGGAGGG
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10              18229080   0 + 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873548            9486723   0 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391639 1002 -   1458659 M
e cerAty1.NW_012001384v1        59696 201 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=766247.000000
s hg38.chr15_KI270850v1_alt    305634 367 +    430880 CAGGATATAGAAAGTCAGAGCATGGT-TTTGAG-TTTTGGAGACAACAAGAGAAAAGAGGGAGGGATTTGGACAACTATGGAGAGGACTGGGCTGTGGAGAGAAATGTTTAGAGATTTGGAAGATGGTGTGTCATGCGATGTATTGTGAAAACCCCTTCTTCATATCCCTAAAAGACCACCGCTGATGGTGATTCATGGTACAATTGATGATTGTATCATGATATAATTCAGTGCTTTTGCAGAGGGATTGGTGCCTTTTTAAAATAATAATGATGCTTTGGCTTGGCTCCATCTGAATTAGTAGAGACAGACATCTTGAGCAGGTTTTATCAGAGTTCCATTAGCTAAATATTGGGTTTCCTATTTTG
s gorGor5.CYUI01015556v1        13049 366 -   1709092 CAGGATATAGAAAGTCAGAGCATGGT-TTTGAG-TTTTGGAGACAACAAGAGAAAAGAGGGAGGGATTTGGACAACTATGGAGAGGACTGGGCTGTGGAGAGAAATGTTT-GAGATTTGGAAGATGGTGTGTCATGCAATGTATTGTGAAAACCCCTTCTTCATATCCCTAAAAGACCACCGCTGATGGTGATTCATGGTACAATTGATGATTGTATCATGATATAATTCAGTGCTTTTGCAGAGGGATTGGTGCCTTTTTAAAATAATAATGATGCTTTGGCTTGGCTCCATCTGAATTAGTAGAGACAGACATCTTGAGCAGGTTTTATCAGAGTTCCATGAGCTAAATATTGGGTTTCCTATTTTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19267515 341 - 121039945 CGGGATATAGAAAGTCAGAGCATGGT-TTTGAG-TTTTGGAG---ACAAGAGAAAAGAGGGAGGGATTTGGACAACTATGGAGAGGACTGGGCTGTGGAGAGAAATGTTTAGAGATTTGGAAGATGGTGTGTCGTGCGATGTATTGTGAAAACCCCTTCTTCATATCCCTAAAAAACCACCACTGATGGTGATTCATGATAC-----------------------AATTCAGTGCTTTTGCAGAGGGATTGGTGCCTTTTTAAAATAGTAATGATGCGTTGGCTTGGCTCCATCTGAATTAGTAGAGACAGACATCTTGAGCAGGTTTTATCAGTGTTCCATTAGCTAAATATTGGGTTTCCTATTTTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107060550 339 - 169600520 CAGGATACAGAAAGTCAGAGCATGGT-TTTGAG-TTTTGGAGACAACAAGAGAAAAGAGGGGGGGATTTGGACAACTATGGAGAAGACTGGGCTGGGGAGAGAAATGTTTAGAGATTTGGAAGATAGTGTGTTGAGCGATCTATTGTGAAAACACCTTCTTTATATCCCTAAAAAACCACCAGCGA---TGATTCATGATAC-----------------------AATTCAGTACTTTTGCAGAGGAATTGGTGCCTTTTTCAAATGATAATAATGCATTGGCTTAGCTCCATTTGTGTTAGT--AGACAGACATCTTGAGCAGGTTTTATCAGTGTTCCATTAGCTAAATATTAGGTTTCCTATTTTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7               65416001 339 + 171882078 CAGGATACAGAAAGTCAGAGCATGGT-TTTGAG-TTTTGGAGACAACAAGAGAAAAGAGGGGGGGATTTGGACAACTATGGAGAAGACTGCGCTGGGGAGAGAAATGTTTAGAGATTTGGAAGATAGTGTGTTGAGCGATCTATTGTGAAAACACCTTCTTTATATCCCTAAAAAACCACCAGCGA---TGATTCACGATAC-----------------------AATTCAGTACTTTTGCAGAGGGACTGGTGCCTTTTTCAAATGATAATAATGCATTGGCTTGGCTCCATTTGTGTTAGT--AGACAGACATCTTGAGCAGGTTTTATCAGTGTTCCATTAGCTAAATATTAGGTTTCCTATTTTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1        59897 340 -   5160157 CAGGATACAGAAAGTCAGAGGCTGGTATTTGAGTTTTTTGAGAAAACAAGAG-AAAGAGGGGGGGATTTGGACAACTATGGAGAAGACTGGGCTGGGgagagaaatgtttagagatttggaagataatgtgttgtgcgatctattgtgaaaacaccttctttatatccctaaaaaaccaccagcga---tgattcatgatac-----------------------aattcaatgcttttgcagagggattggtgcctttttcaaatgATAATAATGCATTGGCTTGGCTCCATCTGTGTTAGT--AGACAGACATCTTGAGCAGGTTTTATCAGTGTTCCATTAGCTAAATATTAGGCTTCCTATTTTG
i cerAty1.NW_012001384v1    I 201 C 0
s chlSab2.chr29               3896718 339 +  24206276 caggatacagaaagtcagagcatggt-tttgag-ttttggagacaacaagagaaaagagcgggggatttggacaactatggagaagactgggctggggagagaaatgtttagagatttggaagatagtgtgttgtgtgatctattgtgaaaacaccttctttatatccctaaaaaaccaccagcga---tgattcatgatac-----------------------aattcagtgcttttgcagagggattggtgcctttttcaaatgataataatgcgttggcttggctccaTCTGTGTTAGT--AGACAGACATCTTGAGCAGGTTTTATCAGTGTTCCATTAGCTAAATATTAGGTTTCCTATTTTG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012116021v1      3841299 337 -   4111199 CAGGATAAAGAAAGTCAGAGCATGGT-TTTGAG-TTTTGGAGACAACAAGAG--AAAAGGGGGGGATTTGGACAACTATGGAGAGGACTAGGCTGGGGAGAGAAATGTTTAGAGATTTGGAAGATAGTGTGTCGTGCGAGCTATTGTGAAAACACCTTCTTTATATCCCTAAAAAACCACCACCGA---TGATTCATGATAC-----------------------AATTCAGTGCTTTTACAGAGGGATTGGTGCCTTTTTAAAATGATAATAATGCATTGGCTTGGCTCCATCTGTGTTAGT--AGACAGACATCTTGAGCAGGTTTTATCAGTGTTCCATTAGCTAAATATTGAGTTTCCTATTTTG
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10              18229080   0 + 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873548            9486723   0 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e manLeu1.NW_012105520v1       391639 1002 -   1458659 M
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=1886059.000000
s hg38.chr15_KI270850v1_alt    306001 597 +    430880 TGGCTTGCTTTAAACCGCTTTGTGGGCCCTTCCGCACTGAAAGCCACTACAGAAATCACCTCTTTGGTCTGCAGCTCCATGTCCCCAAGCTCTGGGCTTTCCTGAATGAGTGGCCTCATTCAGAAGATAATACagcatccctcatctgaaaatccaaaatctgaaatgcttcaaaatccaaaactgtttgagtgccgacatgatgttcgaaggccagattcaaaggaaatgctcattggagcattttggatttcagattttcgaattccaaaatctga--aaaaaatccaaaatctgaaatacttctgTAATTTAACCTGTAATAGACATTGGGTCCTGACCTTCCAGCTGAGGCAGCAAGCAGTCAACAGAGGCTCACCATGCATCCCTCCTGCTCCTCACCCTCCCACTGGCTTGTGCCTCACCCCCCAGCCTCCCTTGCACCTGCTGGGAAGGGGACAGGATGCTCCTGCCCTGCCTTCTTGGATCTCAGGCTACTGTGATAATTGCAGGATTCCAGCCAGGGAAAATGCTACAGGTAGAAGTACTTGGTACTCTCCATAGAGAAGTTTCCAGCAATGGCACAGCAGCCCCGGGAA
s gorGor5.CYUI01015556v1        13415 597 -   1709092 TGGCTTGCTTTAAACCACTTTGTAGGCCCTTCCGCACTGAAAGCCACTACAGAAATCACCTCTTTGGTCTGCAGCTCCATGTCCCCAAGCTCTGGGCTTTCCTGAATGAGTGGCCTCATTCAGAAGATAATACagcatccctcatccgaaaatccaaaatctgaaatgcttcaaaatccaaaactgtttgagtgccgacatgatgttcgaaggccagattcaaaggaaatgctcattggagcattttggatttcagattttcgaattccaaaatctga--aaaaaatccaaaatctgaaatacttctgTAATTTAACCTGTAATAGACATTGGGTCCTGACCTTCCAGCTGAGGCAGCAAGCAGTCAACAGAGGCTCACCATGCATCCCTCCTGCTCCTCACCCTCCCACTGGCTTGTGCCTCACCCCCCAGCCTCCCTTGCACCTGCTGGGAAGGGGACAGGATGCTCCTGCCCTGCCTTCTTGGATCTCAGGCTACTGTGATAATTGCAGGATTCCAGCCAGGGAAAATGCTACAGGTAGAAGTACTTGGTTCTCTCCATAGAGAAGTTTCCAGCAATGGCACAGCAGCCCCGGGAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19267856 597 - 121039945 TGGCTTGCTTTAAACTACTTTGTAGGCCCTTCCGCACTGAAAGCCACTTCAGAAATCACCTCTTTGGCCTGCAGCTCCATGTCCCCAAGCTCTGGACTTTCCTGAATGAGTGGCCTCATTCAGAAGATAGTACagcatccctcatccaaaaatcccaaatctgaaatgcttcaacatccaaaactgtttgagtgccgacatgatgttcgaagtcctggttcaaaggaaatgctcattggagcattttggatttcagattttcgaattccaaaatctga--aaaaaatccaaaatctgaaatacttatgTAATTTAACCTGTAATAGACATTGGGTCCTGACCTTCCAGCTGAGGCAGCAAGCAGTCAACAGAGGCTCATCATGCACCCCTCCTGCCCCTCACCCTCCCACAGGTTTGTGCCTCACTCCCCAGCCTCCCTTGCACCTGCTGGGAAGGGGACATGATGCTCCTGCCCTGCCTTCTTGGATCTTGGGCTACTGTGACAATTGTAGGATTCCAGCCAGGGAAAGTGCTACAGGTAGAAGTACCTGGTACTCTCCACAGAGAAGGTTCCAGCAATGGCACAGCAGCCCCAGGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              107060889 597 - 169600520 TGGCTTGCCTTAAACCACTTTGGAGGCCCTTCCACACTGGAAGCCACCTCAGAAATCACCTCTCTGGCCTGCAGCTCCATGTCCCCAAACTCTGGGCTTTCCTAAATGAGTGGCCTCATTCAGAAGATAATACagcatccctcatccgaaaatccaaaatctgaaatgcttcaaaatccaaaactgtttgagcgccgatatgatgttcgaaggccaggttcaaaggaaatgctcattggagcattttggatttcagattttcgaattccaaaatctgt--aaaaaatctgaaatctgaaatacttctgTAATTTAACCTGTAATAGACATTGGGTCCTGACCTTCCAGCTGACGCAGCAAGCAGTCAACAGAGGCTCACCATGCACCCCTCCTGCCCCTCACCCTCCCACAGGCTTGTGCATCACCCCCCGGCCTCCCTTGCACTCGCTGGGAAGGGGACACGATGCTTCTGCCCTGCCTTCTTGGATCTTGGGCCACTGTGACAATTGCAGGATTCCAGCCAGGGAAAGTGCTACAGGTAGAAGTACTCAGTACTCTCCATAGAGCAGATTCCAGCAATGGCACAGCAGCCCCGGAAA
i rheMac8.chr7              C 0 N 0
s macFas5.chr7               65416340 597 + 171882078 TGGCTTGCCTTAAACCACTTTGGAGGCCCTTCCACACTGGAAGCCACCTCAGAAATCACCTCTCTGGCCTGCAGCTCCATGTCCCCAAACTCTGGGCTTTCCTAAATGAGTGGCCTCATTCAGAAGATAATACagcatccctcatccgaaaatccaaaatctgaaatgcttcaaaatccaaaactgtttgagcgccgatatgatgttcgaaggccaggttcaaaggaaatgcttattggagcgttttggatttcagattttcgaattccaaaatctgt--aaaaaatctgaaatctgaaatacttctgTAATTTAACCTGTAATAGACATTGGGTCCTGACCTTCCAGCTGACGCAGCAAGCAGTCAACAGAGGCTCACCATGCACCCCTCCTGCCCCTCACCCTCCCACAGGCTTGTGCATCACCCCCCGGCCTCCCTTGCACTCGCTGGGAAGGGGACACGATGCTTCTGCCCTGCCTTCTTGGATCTTGGGCCACTGTGACAATTGCAGGATTCCAGCCAGGGAAAGTGCTACAGGTAGAAATACTCAGTACTCTCCATAGAGCAGATTCCAGCAATGGCACAGCAGCCCCGGGAA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1        60237 597 -   5160157 CGGCTTGCCTTAAACCACTTTGGAGGCCCTTCCACACTGGAAGCCACCTCAGAAATCACCTCTCTGGCCTGCAGCTCCATGTCCCCAAACTCTGGGCTTTCCTAAATGAGTGGCCTCATTCAGAAGATAATACagcatccctcatctgaaaatccaaaatctgaaatgcttcaaaatccaaaactgtttgagtgccgatatgatgttcgaaggccaggttcaaaggaaatgctcattggagcattttggatttcagatattcgaattccaaaatctgt--aaaaaatctgaaatccgaaatacttctgTAATTTAACCTGTAGCAGACATTGGGTCCTGACCTTCCAGTTGAGGCAGCAAGCAGTCAACAGAGGCTCACCATGCACCCCTCCTGCCCCTCACCCTCCCACAGGCTTGTGCATCACCCCCCAGCCTCCCTTGCACTCGCTGGGAAGGGGACACGATGCTTCTGCCCTGCCTTCTTGGATCTTGGGCCACTGTGACAATTGCAGGATTCCAGCCAGGGAAAGTGCTACAGGTAGAAGTACTCAGTACTCTCCATAGAGCAGATTCCAGCAATGGCACAGCAGCCCCAGGAA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29               3897057 599 +  24206276 TGGCTTGCCTTAAACCACTTTGGAGGCCCTTCCACACTGGAAGCCACCTCAGAAATCACCTCTTTGGCCTGCAGCTCCATGTCCCCAAACTCTGGGCTTTCCTAAGTGAGTGGCCTCATTCAGAAGATAATACGgcatccctcatccgaaaatccaaaatctgaaatgcttcaaaatccaaaactgtttgagcgccgatatgatgttcgaagaccaggttcaaaggaaatgctcattggagcattttggatttcagattttcgaattccaaaatctgtaaaaaaaatctgaaatcagaaatacttctgTAATTTAACCTGTAATAGACATTGGGTCCTGACCTTCCAGTTGAGGCAGCAAGCAGTCAACAGAGGCTCACCATGCACCCCTCCTGCCCCTCACCCTCCCACAGGCTTGTTCATCACCCCCCGGCCTCCCTTGCACCCACTGGGAAGGGGACACGATGCTTCTGCCCTGCCTTCTTGGATCTTGGGCCACTGTGACAATTGCAGGATTCCAGCCAGGGAAAGTGCTACAGGTAGAAGTACTCAGTACTCTCCATAGAGCAGATTCCAGCAATGGCACAGCAGCCCCGGAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       392641 597 -   1458659 TGGCTTGCCTTAAACCACTTTGGAGGCCCTTCCACACTGGAAGCCACCTCAGAAATCACCTCTCTGGCCTGCAGCTCCATGTCCCCAAACTCTGGGCTTTCCTAAATGAGTGGCCTCATTCAGAAGATAATACagcatccctcatctgaaaatccaaaatctgaaatgcttcaaaattcaaagctgtttgagtgccgatatgatgttcgaaggccaggttcaaaggaaatgctcattggagcattttggatttcagattttcgaattccaaaatctgt--aaaaaatctgaaatccgaaatacttctgTAATTTAACCTGTAATAGACATTGGGTCCTGACCTTCCAGTTGAGGCAGCAAGCAGTCAACAGAGGCTCACCATGCACCCCTCCTGCCCCTCACCCTCCCACAGGCTTGTGCATCACCCCCCAGCCTCCCTTGCACTCGCTGGGAAGGGGACACGATGCTTCTGCCCTGCCTTCTTGGATCTTGGACCACTGTGACAATTGCAGGATTCCAGCCAGGGAAAGTGCTACAGGTAGAAGTACTCAGTGCTCTCCATAGAGCAGATTCCAGCAATGGCACAGCAGCCCCGGGAA
i manLeu1.NW_012105520v1    M 1002 C 0
s colAng1.NW_012116021v1      3841636 597 -   4111199 TGGCTTGCCTTAAACCACTTTGCAGGCCCTTCCACACTGGAAGCCACCTCAGAAATCACCTCTTGGGCCTGCAGCTCCATGTCCCCAAACTCTGGGCTCTCCTAAATGAGTGACCTCATTCAGAAGATAATACagcatccctcatctgaaaatccaaaatctgaaatgcttcaaaatccaaaactgtttgagcgccgatatgatgttctaaggccaggttcaaaggaaacgctcattggagcattttggatttcagattttcgaattccaaagtctgt--aaaaaatctgaaatctgaaatacttctgTAATTTAACCTGTAATAGACTTTGGGTCCTGACCTTCCAGCTGAGGCAGCAAGCAGTCAACAGAGGCTCACCATGCACCCCTCCTGCCCCTCACCCTCCCATAGGCTTGTGCATCACACCCCGGCCTACCTTGCACCCACTGGGAAGGGGACACGATGCTTCTGCCCTGCCTTCTTGGATCTCGGGCCACTGTGACAATTGCAGGATTCTAGCCAGGGAAAGTGCTACAGGTAGAAGTACTCAATACTCTCCATAGAGCAGATTCCAAAAATGGCACAGCAGCCCTGGGAA
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10              18229080   0 + 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873548            9486723   0 -  19069880 I
e panPan2.chr15              76637185 24711 +  99763055 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=1032185.000000
s hg38.chr15_KI270850v1_alt   306598 287 +    430880 gtgtgctgccacacccagctaattttaaaaactttctgtagaggtgtgaattcactatgctgccaaggttggtcttgaattcctggcttcaagtaatcctcccacctttgcttgccaaagtgctgggattac-ggca-tgaactagagctcccagccGAGAGTTTAGTTTTGTTTGCTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGCTTTGGTGCTAGTGCTGAAGTATTACACTCACCATCCGAGGTTGGCAGGACTTTTGTTTCAGTATTGAACAGATGGAA
s panPan2.chr15             76661896 287 +  99763055 gtgtgccaccacgcccagctaatttttaaaattttttgtagagatgcgaattcgctatgctgcccaggctggtcttgaactcctgacttaaagtgatcctcccaccttgggttgccaaactgttgggattac-aggagtgaattactactcccagccGAGAGCTCA-TTTTGTTTGCTAGTGGCGATCTTGGTATCTTTTTATATTTGAGGCTTTGGTGCTAGTGCTGAAGTATTACACTCACCATCCGAGGTTTAAAGGACTTTTGTTTTAATATTGAATAGATGGAA
i panPan2.chr15             I 24711 C 0
s gorGor5.CYUI01015556v1       14012 287 -   1709092 gtgtgctgccacacccagctaattttaaaaactttctgtagaggtgtgaattcactatgctgccaaggctggtcttgaattcctggcttcaagtaatcctcccacctttgcttgccaaagtgctgggattac-ggca-cgaactagagctcccagccGAGAGTTTAGTTTTGTTTGCTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGCTTTGGTGCTAGTGCTGAAGTATTACACTCACCATCCGAGGTTTGCAGGACTTTTGTTTCAGTATTGAACAGATGGAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6              19268453 287 - 121039945 gtgtgctgccacatccagctaattttaaaaactttttgtagagatgtgaattcactatgctgcccagactggtcttgaactcctgacttcaagtcatcctcccaacttggcttgccaaagtgctgggattat-tgca-tgaactagagctcccggcTGAGAGTTTAGTTTTGTTTGCTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGCTTTGGTGCTAGTGCTGAAGTATTACACTCACCATCCGAGGTTTGCAGGACTTTTGTTTCAGTATTGAACAGATGGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60857870 286 + 169600520 gtgtgccaccacgcccagctaatttttaaaattttttgtggagacgtgaatttgctatgctgcccaggttaatcttgaactcctgacttcaagtaatcctcccaccttagtttgccaaagtgctgggattacaggca-tgaactactgctccTAGTCGAGAG-TTAATTTTGATTGCTAGTGGTGTTCTTGGTATC-TTTCATATTTGAGGCTTTGGGGCTAATGCTGAAATATTGCGCTCACCATCTGAGGTTTACAGGACTTTTGTTTCAATGTTGAACAGATGGAA
i rheMac8.chr7              N 0 C 0
s macFas5.chr7              65416937 287 + 171882078 gtgtgctgacacacctagctaatttttaaaactttttgtagagatgtgaactcactatgctgcccagactggtctcgaactcctgacttcaagtaatcctcccaccttggcttgccaaagtgctgggattac-ggca-tgaactagtgctcccggccAAGAGTTTACTTTCGATTGCTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGCTTTGGGGCTAATGGTGAAGTATTACACTCACCATCTGAGGTTTACAGGACTTTTGTTTTAATCTTGAACAGATGGAA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1       60834 287 -   5160157 gtgtgctgacacacccagctaatttttaaaactttttgtagagatgtgaactcactatgctgcccagactggtctggaactcctgacttcaagtaatcctcccaccttggcttgccaaagtgctgggattac-ggca-tgaactagtgctcccggccAAGAGTTTACTTTCGATTGCTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGCTTTGGGGCTAATGCTGAAGTATTACACTCACCATCTGAGGTTTACAGGACTTTTGTTTTAATATTAAACAGATGGAA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              3897656 287 +  24206276 gtgtgctgacacacccagctaatttttaaaactttttgtagagctgtgaactcactatgctgtccagactggtcttgaactcctgacttcaagtaatcctcccaccttggcttgccaaagtgctgggattac-ggca-tgaactagtgctcccggccGAGAGTTTACTTTCGATTGCTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGCTTTGGGGCTAATGGTGAAGTATTACACTCACCATCTGAGGTTTACAGGACTTTTGTTTTAATATTGAACAGATGGAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      393238 287 -   1458659 GTGTGCTGAcacacccagctaatttttaaaactttttgtagagatgtgaactcactatgctgcccagactggtctcgaactcctgacttcaagtaatcctcccaccttggcttgccagagtgctgggattac-ggca-tgaactagtgctcccgaccAAGAGTTTACTTTCGATTGCTAGTGGTGTTCTTGGTATCTTTTCATATTTGAGGCTTTGGGGCTAATGGTGAAGTATTACACTCACCATCTGAGGTTTACAGGACTTTTGTTTTAATATTGAACAGATGGAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1     3842233 287 -   4111199 gtgtgctgtcacacccagctaatttttaaaactttttgtagagatttgaattcactatgctgcccagactggtcttgaactcctgacttcaagtaatcctccctccttggcttgccaaagtgctgggattac-caca-tgaactagtgctcctggccAAGAGTTTAGTTTCGATTGCTAGTGGTGTTCTTAGTATCTTTCCATATTTGAGGCTTTGGGGCTAATGGTGAAGTATTACGCTCACCAACTGAGGTTTACAGGACTTTTGTTTTAATATTGAACAGATGGAA
i colAng1.NW_012116021v1    C 0 C 0
e calJac3.chr10             18229080   0 + 132174527 I
e dasNov3.JH572216            208464   0 -   1040364 I
e canFam3.chr30              1743556   0 -  40214260 I
e otoGar3.GL873548           9486723   0 -  19069880 I
e macNem1.NW_012011056v1       63149 3207 +   6271500 I

a score=243649.000000
s hg38.chr15_KI270850v1_alt   306885 70 +    430880 CTGTTTAGTTCTTCATCTTTGCAGGTATACCAAATGTGCCTACCAGGAGTCTGCTTTATAGCCATTGAAA
s panPan2.chr15             76662183 69 +  99763055 CTGTTTAGTTCTGCATCTTTGCAGGCATACAAAATGTGCCTAGCAGGACTCTGCTTTATATCCAT-GGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       14299 70 -   1709092 CTGTTTAGTTCTTCATCTTTGCAGGTATACCAAATGTGCCTACCAGGAGTCTGCTTTATAGCCATTGAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6              19268740 70 - 121039945 CTGTTTAGTGCTTCATCTTTGCAGATATACCAAATGTGCCTACCAGGAGTCTGCTTTATAGCCATTGAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60858156 69 + 169600520 CTGTTTAGTTCTGCATCTTTGCAGGTATACAAAATGTGCCTACCAGGAATCTGCTTTATATCCA-TGGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              65417224 61 + 171882078 CTGTTTAGGTCTGCATCTTTGCAACTATACAAAATGT---------GAGTCTGCTTTATAGCCATTGAAA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1       61121 61 -   5160157 CTGTTTAGGTCTGCATCTTTGCAGCTATACAAAATGT---------GAGTCTGCTTTATAGCCATTGAAA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              3897943 61 +  24206276 CTGTTTAGGTCTGCATCTTTGCAACTATACAAAATGT---------GAGTCTGCTTTATAGCCATTGAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      393525 61 -   1458659 CTGTTTAGGTCTGCATCTTTGCAACTATACAAAATGT---------GAGTCTGCTTTATAGCCATTGAAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1     3842520 61 -   4111199 CTGTTTAGGTCTACATCTTTGCAGCTATACAAAATAT---------GAGTCTGCTTTATAGCCGTTGAAA
i colAng1.NW_012116021v1    C 0 I 317
s saiBol1.JH378108          50443829 70 +  54856640 ctctttcGTTCTATGTTTTTGCAGGTATACAAGATGTGCCTACCAGGAGTCTGCTTTATAGCCACTGAAA
i saiBol1.JH378108          N 0 C 0
e calJac3.chr10             18229080  0 + 132174527 I
e dasNov3.JH572216            208464  0 -   1040364 I
e canFam3.chr30              1743556  0 -  40214260 I
e otoGar3.GL873548           9486723  0 -  19069880 I
e macNem1.NW_012011056v1       63149 3207 +   6271500 I

a score=1048767.000000
s hg38.chr15_KI270850v1_alt   306955 258 +    430880 AGCAAGAAGTAATATAGTAAAATTTTGCCTGGCTAGAGGCTTTGGAAGA--CAAGTATTTTGGCTTAATTCTATTAACTTGGAAGGATGAAGGTGAAAAAAAATTCAAAACTTTAATTTCCT------GTTTATTGCCATTTGAAAATATAGCCAATGATTCCACTTTTCTTCTCCAGTAAGTTTGGACATTCTGATCTACTTGGTGTTTTATTATAGAACTCCTAGTGTGCCTGAGTCTTACATTGTGAAGAT-CCTTCTCTAAAA
s panPan2.chr15             76662252 259 +  99763055 AGCAAGAAGTAATACAGTAAAACTTTGCCTGGCTAGAGGCTTTGGAAGAATGAAGTATTCTGATTTAATGCTATTAACTTGGAAGTGTGAAGGTGAAAAGAA-TTCAAAACTTACATTTCCT------GTTGAATGCAATTTGAAAATACAGCCAGTGATTCCACTTTTCTTCTCTAGTAAGTTTGGACATTCTGATCTACTTGGTGTTTTATTATAGAACTGCTAGTGTGCCTGAGACTTACATTGTGAAGAC-ACTTTTTAAAAA
i panPan2.chr15             C 0 I 1
s gorGor5.CYUI01015556v1       14369 258 -   1709092 AGCAAGAAGTAATATAGTAAAATTTTGCCTGGCTAGAGGCTTTGGAAGA--CAAGTATTTTGGCTTAATTCTATTAACTTGGAAGGATGAAGGTGAAAAAAAATTCAAAACTTTAATTTCCT------GTTTATTGCCATTTGAAAATATAGCCAATGATTCCACTTTTCTTCTCCAGTAAGTTTGGACATTCTGATCTACTTGGTGTTTTATTATAGAACTCCTAGTGTGCCTGAGTCTTACACTGTGAAGAT-CCTTCTCTAAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6              19268810 260 - 121039945 AGCAAGAAGTAATATAGTAAAATTTTGCCTGGCTAGAGGCTTTGGAAGACTGGAGTATTTTGGCTTAATTCTATTAACTTGGAAGGATGAAAGTGAAAAAAAATTCAAAACTTTAATTTCCT------GTTGAATGCAATTTGAAAATATAGCCAATGATTCCACCTTTCTTCTCCAGTAAGTTTGGACATTCTGATCTACTTGCTGTTTTATTATAGAACTCCTAGTGTGCCTGAGTCTTACATTGTGAAGAC-CCTTTTCTAAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60858225 253 + 169600520 AGCAAGAAATAATATGGTAAAACTTTGCCTGGCTAGAGGCTTTGAAAGAATGGCGTATTCTGGTTTAATTCTATTAAATTGGAAGTATGAAGGTGAAA--------AAAACTCAAATTTCCT------GTTGAATGCAATTTGGAAATATAGCCAGTGATTCCACTTTTCTTCTCTAGTAAGGTTGGACATTCCAATCTACTTGGTGTTTTATGATAGAACTGCTAGTGTGCCTGAGTCTCACATTGTGAAGATACATTTTTCAAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              65417285 253 + 171882078 AGCAAGAAGTAATATAGTAAAATTTTGCCTGGCTAGAGGCTTTGGAAGGCTGGAGTATTTTGGCTTAATTCT-----ATTGGAAG-ATGAAGGTGAAAAAAA-TTCAAAACTTAAATTTCCT------GTTGAATGCAATTTGAAAATATAACCAATGATTCCAGTTTTCTTCTCCAGTAATTTTGGACATTCTGATCTACTTGGTGTTTTATTACAGAACTCCTAGTATGCCTGAGTCTTACATTGTGAAGAT-CCTTTTCTAAAA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1       61182 253 -   5160157 AGCAAGAAGTAATATAGTAAAATTTTGCCTGGCTAGAGGCTTCGGAAGGCTGGAGTATTTTGGCTTAATTCT-----ATTGGAAG-ATGAAGGTGAAAAAAA-CTCAGAACTTAAATTTCCT------GTTGAATGCAATTTGAAAATATAACCAATGATTCCAGTTTTCTTCTCCAGTAATTTTGGACATTCTGATCTACTTGGTGTTTTATTACAGAACTCCTAGTATGCCTGAGTCTTACATTGTGAAGAT-CCTTTTCTAAAA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              3898004 253 +  24206276 AGCAAGAAGTAATATAGTAAAATTTTGCCTGGCTAGAGGCTTTGGAAGGCTAGAGTATTTTGGCTTAATTCT-----ATTGGAAG-ATGAAGGTGAAAAAAA-TTCAAAACTTAAATTTCGT------GTTGAATGCAATTTGAAAATATAACCAATGATTCCAGTTTTCTTCTCCAGTAATTTTGGACATTCTGATCTACTTGGTGTTTTATTACAGAACTCCTAGTATGCCTGAGTCTTACATTGTGAAGAT-CCTTTTCTAAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1      393586 253 -   1458659 AGCAAGAAGTAATATAGTAAAATTTTGCCTGGCTAGAGGCTTTGGAAGGCTGGAGTATTTTGGCTTAATTCT-----ATTGGAAG-ATGAAGGTGAAAAAAA-TTCAAAACTTAAATTTCCT------GTTGAATGCAATTTGAAAATATAACCAATGATTCCAGTTTTCTTCTCCAGTAATTTTGGACATTCTGATCTACTTGGTGTTTTATTACAGAACTCCTAGTATGCCTGAGTCTTACATTGTGAAGAT-CCTTTTCTAAAA
i manLeu1.NW_012105520v1    C 0 I 6981
s colAng1.NW_012116021v1     3842898 258 -   4111199 AGCAAGAAGTAATATAGTAAAATTGTGCCTGGCTACAGGCTTTGGAAGACTGGGGTATTTTGGCTTAATTCTATTAACTTGGAAG-ATGAAGGTGAAAAAAA-TTCAAAACTTAAATTTCCT------GTTGAATGCAATTTGAAAATATAACCAATGATTCCAGTTTTCTTCTCCAGTAATTTTGGACATTCTGATCTACTTGGTGTTTTATTACAGAACTCCTAGTATGCCTGAGTCTTACATTGTGAAGAT-CCTTTTCTAAAA
i colAng1.NW_012116021v1    I 317 C 0
s saiBol1.JH378108          50443899 263 +  54856640 -GCAAGAAGTAATACAGTAAAACTTTGCCTGG-TAGAGGCTTTGAAACAATGCAGTGTTCTGGTTTCATTCTATTATCTTGGAAGTATGAAGGTGAAAAAAA-TTCAAAACTTAAATTTCCTGTTTAAGTTGAAAGCAATTTGAAAATATTGACAATTACTTCACTTTTCTTCTCTAGTGAGTTTCAACATTCTGATCTATTTAGTGTTTTATTACAGAACTCCTCCTGTGCCTGATATTTACATTGTGAGGAT-ACTTTTTAAAAA
i saiBol1.JH378108          C 0 C 0
e calJac3.chr10             18229080   0 + 132174527 I
e dasNov3.JH572216            208464   0 -   1040364 I
e canFam3.chr30              1743556   0 -  40214260 I
e otoGar3.GL873548           9486723   0 -  19069880 I
e macNem1.NW_012011056v1       63149 3207 +   6271500 I

a score=302718.000000
s hg38.chr15_KI270850v1_alt   307213  96 +    430880 CTTCACATGTAAGAGAATATAAATGATATTGGATAAGATCAGGCTGGATGAGAACTGATACCTGTAAATATGCGATTTAGACGAAATCTCTGATTG-------
s panPan2.chr15             76662512  96 +  99763055 CTTGAGAGGTAAGAGGGTGTAAATGGTATTGTGTGAGATCAGGCTGGATGAGAACTGACACTTGTAAACATACTTTTTAGGCTGAATCTCTGATTG-------
i panPan2.chr15             I 1 I 7
s gorGor5.CYUI01015556v1       14627  96 -   1709092 CTTCACATGTAAGAGAATATAAATGATATTGGATAAGATCAGGCTGGATGAGAACTGATACCTGTAAATGTGCGATTTAGACGAAATCTCTGATTG-------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6              19269070  96 - 121039945 CTTCACATGTAAGAGAATATAAATGATATTGGATGAGATCAGGCTGGATGAGAACTGATACCTGTAAATAAATGTTTTAGATGAAATCTCTGATTG-------
i nomLeu3.chr6              C 0 I 7
s rheMac8.chr7              60858478  95 + 169600520 -TTGAGGTGTAAGAGGACGTAAATGGTTTTGTATGAGATCAGGCTGGATGAGAACTGACACTTGTAAATATATATTTTAGACTAAATCTCTGATTG-------
i rheMac8.chr7              C 0 I 7
s macFas5.chr7              65417538  95 + 171882078 -TTTACACATAAGAGGATATAAATGATATTGGATGAGATCAGGCTGGATGAGAACTGATACCTGTAAATATACGTTTTAGATTAAATCTCTGATTG-------
i macFas5.chr7              C 0 I 7
s cerAty1.NW_012001384v1       61435  95 -   5160157 -TTTACACATAAGAGGATATAAATGATATTGGATGAGATCAGGCTGGATGAGAACCAATACCTGTAAATATACGTTTTAGATTAAATCTCTGATTG-------
i cerAty1.NW_012001384v1    C 0 I 7
s chlSab2.chr29              3898257  95 +  24206276 -TTTACACATAAGAGGATATAAATGATATCGGATGAGATCGGGCTGGATGAGAACTGATACCTGTAAATATACGTTTTAGATTAAATCTCTGATTG-------
i chlSab2.chr29             C 0 I 7
s colAng1.NW_012116021v1     3843156  96 -   4111199 CTTTACATGTAAGAGGAAATAAATGATATTGGATGAGATCAGGCTGGATGAGAACTGATACCTGTAAATATACGTTTTAGATGAAATCTCTGATTG-------
i colAng1.NW_012116021v1    C 0 I 7
s saiBol1.JH378108          50444162 101 +  54856640 CTTTAGATGTAAGACGATGTAAATGGT-TTGTATGAGATCAGGCTGGATGAGAACTGATATTTATCAATATCCTTTTTAGACTAAATCTCC-ACTGCCCCATA
i saiBol1.JH378108          C 0 C 0
e calJac3.chr10             18229080   0 + 132174527 I
e dasNov3.JH572216            208464   0 -   1040364 I
e canFam3.chr30              1743556   0 -  40214260 I
e otoGar3.GL873548           9486723   0 -  19069880 I
e manLeu1.NW_012105520v1      393839 6981 -   1458659 I
e macNem1.NW_012011056v1       63149 3207 +   6271500 I

a score=1395817.000000
s hg38.chr15_KI270850v1_alt   307309 325 +    430880 TTTTCTTATTTAACTCATAAAAATAAAACTCATTGGCTGGAAGGTGGGAGCAGGAAGGAGATTTATGTCTTTTAATTGCACGTCA-TTGTTTCATATAGAGACAGAACATATAGTATCCCTGGTTTTGGACCTACAGAATGAAACACATTTTTCTACCTGCTGTATGCCAGAGGTTCTTGAAcacctggagggattactgcagcacagattgctgagccctactccagagtttctgattcatcaggtccagggtggggcctgagaatgtgtatttataagaagttccca-------------ggtgctgctggagctgctagtccagagactacatttt
s panPan2.chr15             76662615 338 +  99763055 TTTTCTTATTTAACTCATAAAAACAAAACACATTGGATGGAGGGTGGGAATAGGAAGGAGATTTATGTCTTTTAATTGCATGTCA-TTGTTTCATATCAAGACAGAACATATGGTATCCCTGGCTTTGGACCTACAGAAGGAAACACATTTTTCTACCTGCTGTATGCCAGAGGTTCTTGAAcacctggagggatgactgcagcacagattgctgagccctactccagagtttctgattcaccatgtgcagggtggggcctgagaatttgcacttataaaaannnnnnnnnnnnnnnnnnnnggttctgctggtgctgctagtccagaggctacatttt
i panPan2.chr15             I 7 C 0
s gorGor5.CYUI01015556v1       14723 325 -   1709092 TTTTCTTATTTAACTCATAAAAATAAAACACATTGGCTGGAAGGTGGGAGCAGGAAGGAGATTTATGTCTTTTAATTGCATGTCA-TTGTTTCATATAGAGACAGAACATATAGTATCCCTGGTTTTGGACCTACAGAAGGAAACACATTTTTCTACCTGCTGTATGCCAGAGGTTCTTGAAcacctggagggattactgcagcacagattgctgagccctactccagagtttctgattcatcaggtccagggtggggcctgagaatgtgtatttataagaagttccca-------------ggtgctgctggagctgctagtccagagactacatttt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6              19269173 324 - 121039945 TTTTCTTATTTAACTCATAAAAATAAAACACATTGGCTGGAGGGCGGGAGCAGGAAGGAGGTTTATGTCTTTTAATTGCGTGTCA-TTGTTTCATACCGAGACAGAACATATAGTATCCCTGGCTTTGGACCTACAGAAGGAAACACATTTTTCTACCTGCTGTGTGCCAGAGGCTCTTTAAcagctggagggattactgcagcacagattgctgagccctactgaggagtttctgattcatcagatccagggtggggcctgagaatttgta-ttataagaagttccca-------------ggtgctgctggagctgctagtccagagactacatttt
i nomLeu3.chr6              I 7 C 0
s rheMac8.chr7              60858580 323 + 169600520 TTTTCTAATTGAACTCATAAAAATAAAACACGTTGGATGGAGGGTGGGAGTAGGAAGGAGATTTATGTCTTTTAATTGCATGTCA-TTGTTGTATAACAAGGCAGAACATATGGTATCCCTGGC-TTGGACCTACAGAAGGAAACATATTTTTCTGCCTGCCGTATGCCAGAGGTTCTTGAAcacctggagggactactgcagcacagactgctgagccctactccagagtttccgattcaccaggcccagggtgggacctgagaatttgcacttataaaaagatctca-------------ggtgctgctggtgctgttagtccatagactacat-tt
i rheMac8.chr7              I 7 C 0
s macFas5.chr7              65417640 321 + 171882078 TTTTCTTATTTAACTCATAAAAATAAAACACATTGGATGGAGGGTGGGAGT----AGGAGATATACGTCTTTTAATTGCATGTCA-TTTTCTCATTTTGAGACAGAACATATAGTATCCCTGGCTTTGGACCTACAGAAGGAAATACATTTTACTACCTGCTATATGCCAGAGGTTCTTGAAcacctggagggactactgcagcaccgattgctgagccctagtccagagtttctgattcatcaggtcctgggtggggcctgagaatttgcatttataagaagttccca-------------ggtgctgctagagctgctggtccagagactacatgtt
i macFas5.chr7              I 7 C 0
s cerAty1.NW_012001384v1       61537 325 -   5160157 TTTTCTTATTTAACTCATAAAAATAAAACACATTGGATGGAGGGTGGGAGTAGGAAGGAGATATACGTCTTTTAATTGCATGTCA-TTTTCTCATATTGAGACAGAACATATAGTATCCCTGGCTTTGGACCTACAGAAGGAAATACATTTTACTACCTGCTGTATGCCAGAGGTTCTTGAAcacctggagggactactgcagcagagattgctgagccctactccagagtttctgattcatcaggtccagggtggggcctgagaatttgcatttataagaagttccca-------------ggtgctgctagagctgctggtccagagactacatgtt
i cerAty1.NW_012001384v1    I 7 C 0
s chlSab2.chr29              3898359 325 +  24206276 TTTTCTTATTTAACTCATAAAAATAAAACACATTGGATGGAGGGTGGGAGTAGGAAGGAGATATATGTCTTTTAATTGCATGTCA-TTTTTTCATATCGAGACAGAACATATAGTATCCCTGGCTTTGGACCTACAGAAGGAAATACATTTTACTACGTGCTGTATGCCAGAGGTTCTTGAAcacctggagggactactgcagcacagattgctgagccctagtccagagtttctgattcatcaggtccagggtggggcctgagaatttgcatttataagaagttccca-------------ggtgctgctagagctgctggtccagagactacatgtt
i chlSab2.chr29             I 7 C 0
s manLeu1.NW_012105520v1      400820 325 -   1458659 TTTTCTTATTTAACTCATAAAAATAAAACACATTGGATGGAGGGTGGGAGTAGGAAGGAGATATACGTCTTTTAATTGCATGTCA-TTTTCTCATATCGAGACAGAACATATAGTATCCCTGGCTTTGGACCTACAGAAGGAAATACATTTTACTACCTGCCGTATGCCAGAGGTTCTTGAAcacctggagggactactgcagcacagattgctgagccctagtccagagtttctgattcatcaggtccagggtggggcctgagaatttgcatttataagaagttccca-------------ggtgctgctagagctgctggtccagagactacatgtt
i manLeu1.NW_012105520v1    I 6981 C 0
s colAng1.NW_012116021v1     3843259 320 -   4111199 TTTTCTTATTTAACTCATAAAAATAAAACACATTGGATAGAGGGTGGGAGTAGGAAGGAGATATATGTCTTTTAATTGTGTATCATTTTTTTCATATTGAGACAGACCGTATAGTATCCCTGGCTTTGGACCTACAGAAGGAAACACATGTTACTACCTGCTATATGCCAGAGGTTCTTgaatacctggagggactactgcagcacagattgctgagccctagtccagagtttctgattcatcaggtccagggtggggcctgagaatttg------taagaagttccca-------------ggtgctgctagagctgctagtccagagaccacatgtt
i colAng1.NW_012116021v1    I 7 C 0
s saiBol1.JH378108          50444263 324 +  54856640 TTTTCTGCTTGAACTCATAAAAAGAAAACACATTGGATGGAGGGTGGGAGTAGGAAAGAGATTTCTGTGTCTCAATTGCATGTCA-CTGTTTTGTATCAAGACAGAACACAGAGCATCCCGGGCTTTGGACCTACAGAAGGAAACACATTTT-CTACCTCCCGTATGCCAGAAGTTCTTGAAcacctggagggatgactgcagcacagattgccaagccctactccagaatttctgattcatcaggcccagggtggggcctgagaacttgcatttttaagaagttctca-------------ggcgctgtgggtgctgctagtccagagactgcattac
i saiBol1.JH378108          C 0 I 154
e calJac3.chr10             18229080   0 + 132174527 I
e dasNov3.JH572216            208464   0 -   1040364 I
e canFam3.chr30              1743556   0 -  40214260 I
e otoGar3.GL873548           9486723   0 -  19069880 I
e macNem1.NW_012011056v1       63149 3207 +   6271500 I

a score=1115212.000000
s hg38.chr15_KI270850v1_alt   307634 258 +    430880 tgagaactgctCTCATATACTAACTGTAAATTGCAGAGCTCTAGAAAAAAAGCTTAGTTTGGTGTGGGATAAG-AAGCACACAGGTTATGGAGAAAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGATTTCAGGTAACAAGCAATACACAGTGACATAACA-AATTCTTGGTTTTCATGACTGCAAGTGAGAGCCAAGTATCAAGTGAGAAATTCAGCTTCATTTGCAAGGCTTAGAGAGGCCAGGTGATT
s panPan2.chr15             76662953 259 +  99763055 tgagaacccctCTTGTCTACTAACTGTAAATTGTAGAACTCTAGAACAAA-GCTTAGTTTGGTGTGGGGAAAGGAAGCTCACAGGTTATGGAGCAAATCATGAAAGATTCAACCGTTGATCCCAGCCTCGTGTGGAATTCAGGTAACAGTCAATACACAGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAAGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCTTAGAGAGGCCAGGTGATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       15048 258 -   1709092 tgagaactgctCTCATATACTAACTGTAAATTGCAGAGCTCTAGAAAAAAAGCTTAGTTTGGTGTGGGATAAG-AAGCACACAGGTTATGGAGAAAATCGTGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGATTTCAGGTAACAAGCAATACACAGTGACATAACA-AATTCTTGGTTTTCATGACTGCAAGTGATAGCCAAGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCTTAGAGAGGCCAGGTGATT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6              19269497 258 - 121039945 tgagaaccactCTCATATACTAACTGTAAATTGCAGAGCTCTAGAAAAAA-GCTTAGTTTGGTGTGGGATCAG-AAGCACACAGGTTATGGAGAAAATCATGAAAGATTCAACCCTTGATTCCAGCCTACTGTGGAATTCAGGTAACAAGCAATACACAGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAAGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCTTAGAGAGGCCGAGTGATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7              60858903 252 + 169600520 tgaaaaccactCTTGTCTATTAACTGTAAACTGTAGAATTCTAGAAAAAA-ACTTAGTTTGGTCTGGGATAAG-AAGCACACAGGTTATGGAGAAAATCATGAAAGATTCAACCCTTGATCTCAGCCTAGTGTGGAATTCAGGTAACAAGCAGTACACAGTGACAT-----AATTCTCGGTTTTCATGATTGCAAATCATAGCCAAGTATCAAGTGAGAAATTCAGTTTCATTTGCAAGGCTTAGAGAGGTCAGGTGAT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              65417961 258 + 171882078 tgaaaaccactCTTATATACTAACTGTAAATTGCAGAACTCTAGAAAAAA-GCTTAGTTTGGTCTGGGATAAG-AAGCATACAGGTTATGGAGCAAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGAATTCAGGTTACAAGCAATACACGGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAGGTATTGAGTGAGAAATTCAGTTTCATTCACAGGGCTTAGAGAGGCCAGGTGATT
i macFas5.chr7              C 0 N 0
s cerAty1.NW_012001384v1       61862 258 -   5160157 tgaaaaccactCTTATATACTAACTGTAAATTGCAGAACTCTAGCAAAAA-GCTTAGTTTGGTCTGGGATAAG-AAGCATACAGGTTATGGAGCAAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGAATTCAGGTTACAAGCAATACACGGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAGGTATTGAGTGAGAAATTCAGTTTCACTCACAGGGCTTAGAGAGGCCAGGTGATT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              3898684 258 +  24206276 tgaaaaccactCTTATACACTAACTGTAAATTGCAGAACTCTAGAAAAAA-GCTTAGTTTGGTCTGGGATAAG-AAGCATACAGGTTATGGAGCAAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGAATTCAGGTTACAAGCAATACACGGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAGGTATTGAGTGAGAAATTTAGTTTCATTCACAGGGCTTAGAGAGGCCAGGTGATT
i chlSab2.chr29             C 0 N 0
s manLeu1.NW_012105520v1      401145 258 -   1458659 tgaaaaccactCTTATATACTAACTGTAAATTGCAGAACTCTAGAAAAAA-GCTTAGTTTGGTCTGGGATAAA-AAGCATACAGGTTATGGAGCAAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGAATTCAGGTTACAAGCAATACACGGTGACATAACACAATTCTTGGTTTTCATGATTGCAAGTCATAGCCAGGTATTGAGTGAGAAATTCAGTTTCATTCACAGGGCTTAGAGAGGCCAGGTGATT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012116021v1     3843579 258 -   4111199 tgaaaaccactATTATATACTAACTGTAAATTGCAGACCTCTAGAAAAAA-GCTTAGTTTGGTCTGAGATAAG-AAGCACACAGGTTATGGAGCAAATCATGAAAGATTCAACCCTTGATCCCAGCCTAGTGTGGAATTCAGGTTACAAGCAATACACGGTGACATAACACAATTCTTGGTTTTCATGATCGCAAGTCATAGCCAGGTATTGAGTGAGAAATTCAGTTTCGTTCACAGGGCTTAGAGAGGCCAGGTGATT
i colAng1.NW_012116021v1    C 0 C 0
s saiBol1.JH378108          50444741 253 +  54856640 TGAGAACCACTCTTGTTTACTAACTGTAAACTGTAGAACTCTGGAAAAAA-GCTTAGTTTGGTCTGGGATAAA-CAGCAAACTGATGATGGAGCAAATCATGAAAGATTCAACCCTTGATTGCAGCCTAGTGTCAAATTCAGGTAACGAGCAGTACACAGTGACATGACAGAACCCTTGGTTTTGATGATTGCAAGTCATAGCCAAGTATCAACTGAGAAATT-AGTTTTGTTTGCAAGGCTT----AGGCCAGTTGATT
i saiBol1.JH378108          I 154 C 0
e calJac3.chr10             18229080   0 + 132174527 I
e dasNov3.JH572216            208464   0 -   1040364 I
e canFam3.chr30              1743556   0 -  40214260 I
e otoGar3.GL873548           9486723   0 -  19069880 I
e macNem1.NW_012011056v1       63149 3207 +   6271500 I

a score=35511.000000
s hg38.chr15_KI270850v1_alt    307892 10 +    430880 CTAGAAAAAT
s panPan2.chr15              76663212 10 +  99763055 CTAGAAAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        15306 10 -   1709092 CTAGAAAAAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19269755 10 - 121039945 CTATTAAAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60859155 10 + 169600520 CTAGAATACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108385058 10 - 171882078 CTAGAATACT
i macFas5.chr7              N 0 C 0
s cerAty1.NW_012001384v1        62120 10 -   5160157 CTAGAAAAAT
i cerAty1.NW_012001384v1    C 0 I 3935
s chlSab2.chr29              21075958 10 -  24206276 CTAGAATACT
i chlSab2.chr29             N 0 C 0
s manLeu1.NW_012105520v1       401403 10 -   1458659 CTAGAAAAAT
i manLeu1.NW_012105520v1    C 0 I 3929
s colAng1.NW_012116021v1      3843837 10 -   4111199 CTAGAAAAAT
i colAng1.NW_012116021v1    C 0 n 0
s saiBol1.JH378108           50444994 10 +  54856640 CTAGAGAAAT
i saiBol1.JH378108          C 0 C 0
e calJac3.chr10              18229080  0 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9486723  0 -  19069880 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=143736.000000
s hg38.chr15_KI270850v1_alt    307902 69 +    430880 GGGCCTTGTATTTCTCTTAAACCAGTAAAGAGCTTTAAGTGGTTATTAAATTGAAAGCTTTGTGTTCTT
s panPan2.chr15              76663222 68 +  99763055 AGGCCTTGTATTTGCTTTAAACCAGTAA-GAGCTTTGAGTGCTTATTAAATGGAAAGCTTTGTGtttct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        15316 69 -   1709092 GGGCCTTGTATTTCTCTTAAACCAGTAAAGAGCTTTAAGTGGTTATTAAATTGAAAGCTTTGTGTTCTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19269765 69 - 121039945 GGGCCTTGTATTTCTCTTAAACCAGTAAAGAGCTTTAAGTGGTTATTAAATTGAAAGCTTTGTGTTCTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60859165 69 + 169600520 GGGACTTGTATTTCTCTTAAACAAGTAGAGAGTTTTAAGTGCTTATTAAATTGAAAGCTTTGTGTTCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108385068 69 - 171882078 GGGACTTGTATTTCTCTTAAACAAGTAGAGAGTTTTAAGTGCTTATTAAATTGAAAGCTTTGTGTTCTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21075968 69 -  24206276 GGGACTTGTATTTCTCTTAAACAACTAGAGAGTTTTAAGTGTTTATTAAATTGAAAGCTTTGTGTTCTT
i chlSab2.chr29             C 0 C 0
s saiBol1.JH378108           50445004 69 +  54856640 GGGTCTTGTATTCGTTTTAAGCCAGTAAAGAGCTTTGAGTGTTCATTAAATTGAAATCGCTGTGTTTTT
i saiBol1.JH378108          C 0 C 0
e calJac3.chr10              18229080  0 + 132174527 I
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9486723  0 -  19069880 I
e colAng1.NW_012116021v1      3843847  0 -   4111199 I
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=1148130.000000
s hg38.chr15_KI270850v1_alt    307971 440 +    430880 ACTTAttttgtatttt-----attttatttc---------------ttttgagatggagtcttgctctgtcgcccaggctggagtgcagtggcgtgagcttggctcactgcaacctccatctcctgggttccagtgattctcctgcctcagcctcccaaatagctgggattacaggcacccgcaaccacgcctggctagtttttgtatttttagtagagacagggtttcttcatgttggccaggctggtctcgaactcctgacctc-aggcaatccacccacctcggcctcccaaagtgatggcattacaggcgtgagccaccgcacccggccCAAAAGCTTTGTGTTTTTAAAGATATTAGACATGTTTCTTG--TTTTTAAAA-------GAAATCTTAACAATAATGTAGGAGAATAAGACAAACATTTTT-CCAAAAAAGAGAAATTGTTGTGATTATTTTGTCTTA
s panPan2.chr15              76663290 435 +  99763055 atttatttttgact-------attttatttt---------------ttttgagatggagtctcagtctttcacccaggctggagtgcagtggcatgaccttggctcactgcaacttccgcctcccgggttcaattgattctcctgcctcagcctcccgagtagctgggattacaggtacccatgaccacacctggctagtttttgtatttttagtagagacagggtttcaccatgttggccaggctggtcttgaactcctgaccta-aggtgatccacccacctaggcctccaaaagtgctgggattactggtgtgagccaccacacccagccCAAAAGCTTTGTGTTTTTAAAGATATTAGACATGTTTCTTG--TTTTTAAAA--------AAATCTTAA---TAATGTAGGAGAATAAGAGAAATGTTTTTTCCAGAACAGAGAAATCACTGTGATTATTTTAACTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        15385 439 -   1709092 ACttattttgtatttt-----attttatttc---------------ttttgagatggtgtcttgccctgtcgcccaggctggagtgcagtggcgtgagcttggctcactgcaacctccatctcctgggttc-agtgattctcctgcctcagcctcccaaacagctgggattacaggcacccgcaaccacgcctggctagtttttgtatttttagtagagacagggtttcttcatgttggccaggctggcctcgaactcctgacctc-aggcaatccacccacctcggcctcccaaagtgatggcattacaggcgtgagccaccacacccggccCAAAAGCTTTGTGTTTTTAAAGATATTAGACATGTTTCTTG--TTTTTAAAA-------GAAATCTTAACAATAATGTAGGAGAATAAGACAAACATTTTT-CCAAAAAAGAGAAATTGTTGTGATTATTTTGTCTTA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19269834 453 - 121039945 AGTTATTTTGTATTTT-----Attttattttatttgttttgttttgttttgagatggagtcttgctctgtcgcccaggctggagtgcagtggcgtgagcttggctcactgcaacctccgtctcctgggttcaagtgattctcccgcctcagcctcccaaatagctgggattacaggtacccaccaccacgcctggctagttttcgtatttttagtagagacagggtttcttcatgttggccaggctggtctcaaactcctgacctc-aggtgatccaaccacctcggcctcccaaagtgacggcattataggcatgagccaccacacccggccCAAAAGCTTTGTGTTTTTAAAGATATTAGACATGGTTCTTG--TTTTTTAAA-------AAAATCTTAACAATAATGTAGAAGAATAAGACAAACATTTTT-CCAAAAA--AGAAATCATTGTGATTATTTTGTCCTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60859234 437 + 169600520 CCTTAttttgtgtttt-----attttatttc---------------ttttgagatggagtcttgctctgttgcccaggctgaagtgcaggggcgtgagcttggctcactgcaacctccgtctcctgggttcaggtaattcttctgcctcagccgaccaaatagctgggattacaggcacccaccaccacgcctggctagtttttgtatttttagtacagacagggtttcatcatgttggccatgttggtcttgaactcctgacctc-aggcaatccacccacctcggcctcccaaagtgatggcattacaggtgtgaaccaccgcacctggccCAAAAGCTTTGTGTTTTTAAAGATATTAGACATGTTTATCA--TTTAAAAAA-------AAAATCTTCA---TAATGTAGGAGAATAAGAGAAATGTTCTT-CCAAAAAGGAGAGATCATTGTGATTATTTTGTCTTA
i rheMac8.chr7              C 0 I 103
s macFas5.chr7              108385137 437 - 171882078 CCttattttgtgtttt-----attttatttc---------------ttttgagatggagtcttgctctgttgcccaggctgaagtgcaggggcgtgagcttggctcactgcaacctccgtctcctgggttcaggtaattcttctgcctcagccgaccaaatagctgggattacaggcacccaccaccacgcctggctagtttttgtatttttagtacagacagggtttcatcatgttggccatgttggtcttgaactcctgacctc-aggcgatccacccacctcggcctcccaaagtgatggcattacaggtgtgaaccactgcacccggccCAAAAGCTTTGTGTTTTTAAAGATATTAGACATGTTTATCA--TTAAAAAAA-------AAAATCTTCG---TAATGTAGGAGAATAAGAGAAATGTTCTT-CCAAAAAAGAGAAATCACTGTGATTATTTTGTCTTA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21076037 444 -  24206276 ACTTAttttgtgttttatttaattttatttc---------------ttttgagatggagtcttgctctgttgccgaggctgaagtgcaggggcgtgagcttggctcactgcaacctccgtctcctgggttcaggtaattctcctgcctcagccgaccgaatagctgggattacaggcacccaccaccacgcctggctagtttttgtatttttggtacagacagggtttcatcatgttggccaggttggtcttgaactcctgacctcaaggcgatccacccacctcggcctcccaaagtgatggcattacaggcatgaaccaccacacccggccCAAAAGCTTTGTGTTTTTAAAGATATTAGACATGTTTATCA-TTTAAAAAAA-------AAAATCTTCG---TAATGTAGGAGAATAAGAGAAACGTTCTT-CCAAAAAAGAGAAATCATTGTGATTATTTTGTCTTA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        13616 434 -   1784207 ACTTAttttgtatttt-----attttatttc---------------ttttgagatggagtcttgctctgtctcccaggctggagtgcagtggtgtgatcttggctcactgccatctccctttcttgggttcaagtgattctcctgcctcagcctcccaaatagctgggattacaggcatccaccaccatgcctggctagtttttgtatttttagtagagacagggtgtcatcatgttttccaggctggtctcaaactcctgacctc-aagtgatccacccacctcggcctcccaaagtcatgggattataggcatgagccaccatacccagccCAAAAGCTTTGTGTTTTTAAAGATATTAGACCTGTTTCTTGTTTTAAAAAAA-------AAAATCTTAA---CAAT-----AATATAGGAGAAACATTTTT-CTAAAAAAGAGAAATAATTGTGATTATTTTGTCTTA
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50445073 443 +  54856640 ATGTAttttgtattttattttattgtatttc---------------ttttgagatggagtctcgctctgccgcccaggctggagtgctgtggcatgatcttggctcattacaacctccgtctcctgggttcaggtgattctcctgccttagcctcccgagtagctatgattacaggcacccaccaacacgcctggctagtttttgtgtttttagtagagacggtgttttaccatgttggccaggctggtgtggagctcctgacctc-aggtgattcacccatctcggcctctcaaagtgctgggattacaggtgtgagccactgcaccc-gCCAAAAAGCTTTGTGTTTCTAAAGATGTTAGACATACATCTTG--CTGAAAAAAAAAAAAAAAAACCTTAACAATAATGAAGGAG--------AAACGTTTTT-CCAAAAAAGGTAAATCATTGTGATTATTTTATCTTG
i saiBol1.JH378108          C 0 C 0
e calJac3.chr10              18229080   0 + 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873548            9486723   0 -  19069880 I
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=737754.000000
s hg38.chr15_KI270850v1_alt    308411 269 +    430880 TTGGAATGTCGGATACTATAGTCGGCTTCATT----AATCATCAAGCATGCTATGGATTTTCCATTTTTATAGGATCTATATCTCAGTTAAGGTAATACTGGTAATTCTTGTACTCCATTTGAAGATGAAAAATATAGGCCAAAATCACAGACT----TTGCACAGAAGCTGCATAATGAAGACAGCTCTGGAGGAacacatagat------acacacacacagacacacaTATATATAAAGTATATACACATATATTTTTTAAAGTTTATTTTTTACAGTTT
s panPan2.chr15              76663725 269 +  99763055 TTGGAATGTTGGATAATATAGTCCACTTCATTCATTAATTATCAAACATGCTATGGATTTTCCATTTTTATAGGATTTGTGTCTTAATTGGGGTAATACTGGTAATTCTTATACTCCATCTGAAGATGAAAAATGTAGGCCAAAATCATAGACC----ACGCATAGAAGCTGGATAATGAAGACAGCTCTGCAGGAACATGTAGAC------ACACACACACTGACACACATATATATAAAGTATAAACACATATATTTTTTAAAGTTTATTTTTAACA----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        15824 269 -   1709092 TTGGAATGCTGGATACTATAGTCGGCTTCATT----AATCACCAAGCATGCTATGGATTTTCCATTTTTATAGGATCTATATCTCAGTTAAGGTAATACTGGTAATTCTTGTACTCCATTTGAAGATGAAAAATATAGGCCAAAATCACAGACT----TTGCACAGAAGCTGCATAATGAAGACAGCTCTGGAGGAacacatagat------acacacacacagacacacaTATATATAAAGTATATACACATATATTTTTTAAAGTTTATTTTTTACAGTTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19270287 269 - 121039945 TTGGAATGTTGGATACTATAGTCGGCTTCATT----AATCATCAAGCATGCTATGGATTTTCCATTTTTATAGGATCTATATCTCAGTTAAGGTAATACTGGTAATTCTTGTGCTCCATTTGAAGATGAAAAATACAGGTGAAAATCATAGACT----TTGCATAGAAGCTGGATAATGAAAACAGCTCTGGAAGAacacatagat------acacacacacagacacacaTATATATGAAGTATACACACATATATTTTTTAAAGTTTACTTTTTACAGTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60859774 269 + 169600520 ttGGAATGTTGGATACTATAGTCTACTTCCTT----AATCATCAAGCATGCTATGAATTTTCCATTTTTATAGGATCTGTATCTCAGTTAAGGTGATACTGGTAATTCTTATACTCCATATGAAGATGAAAAATATAGTCCAAAATCATAGACT----TTGCATAGAAGCTGGATAATGAAGACAGCTCTGGAGGAACGCATAGAT------acacacacacagacacacaTATATATAAAGTATACACATGTATACATTTTTAAGTTTATTTTTTACAGTTT
i rheMac8.chr7              I 103 C 0
s macFas5.chr7              108385574 269 - 171882078 TTGGAATGTTGGATACTATAGTCTACTTCCTT----AATCATCAAGCATGCTATGAATTTTCCATTTTTATAGGATCTGTATCTCAGTTAAGGTGATACTGGTAATTCTTATACTCCATTTGAAGATGAAAAATATAGTCCAAAATCATAGACT----TTGCATAGAAGCTGGATAATGAAGACAGCTCTGGAGGAACGCATAGAT------acacacacacagacacacaTATATATAAAGTATACACATGTATACATTTTTAAGTTTATTTTTTACAGTTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21076481 267 -  24206276 TTGGAATGGTGGATACTACAGTCTACTTCATT----AATCATCAAGCATGCTATGAATTTTCCATTTTTATAGGATCTGTATCTCAGTGAAGGTGATACTGGTAATTCTTGTACTCCATTTGAAGATGAAAAATATAGGCCAAACTCATAGACT----TTGCATAGACGCTGGATAATGAAGACAGCTCTGGAGGAACGCATAGAT--------ACACACACAGACACACATATATATAAAGTATACACATGTATACATTTTTAAGTTTAGTTTTTACAGTTT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        14050 275 -   1784207 TTGGAATGTTGGATACTATAATCTGCTTCATT----AATCATCAAGCATGCTATGGATTTTCCATTTTTATAGGATCTGTATCTCAGTTAAGGTAATACTGGTAATTCTTGTACTCCATTTGAAGATGAAAAATATAGACCAAAATCATAGACC----TTGCATAAAAGCTGGATAATGAAGACAGCTCTGGAGGAacacatagatacacacacacacacacagacacacaTATATATAAACTTTACCCACATATATTTCTTAAAGTTTATTTTTTACAGTTT
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50445516 267 +  54856640 CTGGAATGTTGGGTAACGTAGTCTGCTTAATG----AATCATCAGGCATGCTATGGATTTTCCATTTTTATAGGTTTTGTATCTTTGTTAAGGTAATACTGGTAATTCTTGTACTCCATTTGAAGATGAAAAATAGAGGCCAAAATCATAGACTTTGCTTGCATTGAAGCTGGATAATGAAGACAGCTTTGAAGGCACACATAGAA------ATAGACAGACAGATACACGTATATATAAAGTATGCAGACATATATTTTTTAAAGTTCATTTTTTA------
i saiBol1.JH378108          C 0 C 0
e calJac3.chr10              18229080   0 + 132174527 I
e dasNov3.JH572216             208464   0 -   1040364 I
e canFam3.chr30               1743556   0 -  40214260 I
e otoGar3.GL873548            9486723   0 -  19069880 I
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=65404.000000
s hg38.chr15_KI270850v1_alt    308680 23 +    430880 TAAAAGTTTTAAAGCAAAACCCA
s panPan2.chr15              76663994 17 +  99763055 ------TTTTAAGGCAAAACCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        16093 23 -   1709092 TAAAAGTTTTAAAGCAAAACCCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19270556 23 - 121039945 TAAAGCTTTTAAAGCAAAAGCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60860043 23 + 169600520 TAAAGCTTTTAAAGCAAAAGCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108385843 23 - 171882078 TAAAGCTTTTAAAGCAAAAGCCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21076748 23 -  24206276 TAAAGCTTTTAAAGCAAAAGCCA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        14325 23 -   1784207 TAAAGCTTTTAAAGCAAAAGCAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114301920 23 - 132174527 TAAAAGTTCAAAGGCAAAAGTCA
i calJac3.chr10             I 61784 C 0
s saiBol1.JH378108           50445783 21 +  54856640 --AAACTTTTAAAGGAAAAGCCG
i saiBol1.JH378108          C 0 C 0
e dasNov3.JH572216             208464  0 -   1040364 I
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9486723  0 -  19069880 I
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=2172.000000
s hg38.chr15_KI270850v1_alt    308703 1 +    430880 G
s panPan2.chr15              76664011 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        16116 1 -   1709092 G
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19270579 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60860066 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108385866 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21076771 1 -  24206276 G
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        14348 1 -   1784207 G
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114301943 1 - 132174527 G
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           50445804 1 +  54856640 A
i saiBol1.JH378108          C 0 C 0
s dasNov3.JH564958             166817 1 +    584178 G
i dasNov3.JH564958          T 22252 C 0
e canFam3.chr30               1743556 0 -  40214260 I
e otoGar3.GL873548            9486723 0 -  19069880 I
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=83908.000000
s hg38.chr15_KI270850v1_alt    308704 23 +    430880 CCCTTCCCCTCTCCCAGA-GTGGG
s panPan2.chr15              76664012 22 +  99763055 CCCT-CCCCTCTCCCGGA-GTAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        16117 23 -   1709092 CCCTTCCCCTCTCCCAGA-GTGGG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19270580 23 - 121039945 CCCCTCCCCTCTTCCAGA-GTGGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60860067 23 + 169600520 ACCCTTGCCTCTCCCAGA-GTGGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108385867 23 - 171882078 ACCCTTGCCTCTCCCAGA-GTGGG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21076772 23 -  24206276 ACCCTTGCCTCTCCCAGA-GTGGG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        14349 23 -   1784207 CACCTCCCCTCTCCCAGT-GTGGG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114301944 23 - 132174527 CCCTTCCGCTCTCCCCGA-GTGGG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           50445805 23 +  54856640 CCCCTCCCCACTCCCGGA-GTGGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1000787 23 +   1024465 CCCTTCCGCTCTCGTGGA-GTGGG
i cebCap1.NW_016107979v1    N 0 C 0
s dasNov3.JH564958             166818 24 +    584178 CCTAGCCCCGCCCCCTGACGTGGG
i dasNov3.JH564958          C 0 C 0
e canFam3.chr30               1743556  0 -  40214260 I
e otoGar3.GL873548            9486723  0 -  19069880 I
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=3843.000000
s hg38.chr15_KI270850v1_alt    308727 1 +    430880 C
s panPan2.chr15              76664034 1 +  99763055 C
i panPan2.chr15             C 0 I 1
s gorGor5.CYUI01015556v1        16140 1 -   1709092 C
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19270603 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60860090 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108385890 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21076795 1 -  24206276 C
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        14372 1 -   1784207 C
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114301967 1 - 132174527 T
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           50445828 1 +  54856640 C
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1000810 1 +   1024465 T
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             410275 1 -  31380117 C
i otoGar3.GL873533          T 30596 C 0
s dasNov3.JH564958             166842 1 +    584178 C
i dasNov3.JH564958          C 0 C 0
e canFam3.chr30               1743556 0 -  40214260 I
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=1290916.000000
s hg38.chr15_KI270850v1_alt    308728 296 +    430880 ---------GGCCCCTCCCCTTTCTCTGAGT-GGGCGGGGACAGCGGTTG----CATGGGCAGCTTTCCTTATGATGCCACAG-GTCCCTCTGGACATGCT----GCTGCCTGGCCACGCCTCCTTTCCCTTTCATCTTTCTCACTGACCAATGGGCTTGGAGCATTAAGGCCACGCCCCTATTCTGCGTT---CCATTGGTGCCCTGGTTACG-CCACCTGTGGCTCAGTT-GCACAGCTGCCTGGTAGGTGACTGGAGGCATTGAGCAGTGTGCTCACTGGTATTTCGCTGATGTGG------------------CCCCA---ACCCCGC---CTCCCTCCC
s panPan2.chr15              76664036 273 +  99763055 ---------GGCCCCGCCCCTCTCCCCAAGT-GGGCGGGGACAGCAGTCG----CATGGGCAGCTTTCCTTGTGATGCCACAG-GTTCCTCTGGACACACT----GCGGCCTGGCCACGCCTCCTTTCCCTTTCATCTTTCTCATTGACCAATGGGATTGGAGCATTAAGGCCACACCCCTATTCTGCATT---CTAGTGTGGCCCTGGTTACG-CCTCCTCTGGCTCAGTC-ACACAGCCCTCTGGTAGGTGACTGGAGG---TGA--------------------TTGCTGATGTGG------------------CCCCA---ACCCTAC---CTCCCTCCC
i panPan2.chr15             I 1 C 0
s gorGor5.CYUI01015556v1        16141 295 -   1709092 ---------GGCCCCTCCCCTTTCTCTGAGT-GGGCGGGGACAGCGGTTG----CATGGGCAGCTTTCCTTATGATGCCACAGAGGGACTCTGGACATGCT----GCTGCCTGGCCACGCCTCCTTTCCCTTTCATCTTTCTCACTGACCAATGGGCTTGGAGCATTAAGGCCACGCCCCTATTCTGCGTT---CCACTGGTGCCCTGGTTACG-CCACCTGTGGCTCAGTT-GCACAGCCGCCTGGTAGGTGACTGGAGGCACTGAGCA--GTGCTCACTGGTATTTCGCTGATGTGG------------------CCCCA---ACCCCGC---CTCCCTCCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19270604 293 - 121039945 ---------GGCCCCTCCCC-CTCTCTGAGT-GGGCGGGGACAGCGGTTG----CATGGGCCACTTTCCTTATGATGCCACAG-GTCCCTCTGTACATGCT----GCTGCCTGGCCACGCCTCCTTTCCCTTTCATCTTTGTCACTGACCAATGGGCTTGGAGCATTAAGGCCACACCCCTATTCTGCATT---CTAGTGGCGCCTTGGTTAAG-CCTCCTGTGGCTCAGTC-ACACAGCTGCCTGGTAGGTGACTGGAGGCATTCAGCA--GTGCTCACTGGGATTTCACTGAAGTGG------------------CCCCA---ACCCTGC---CCCACTCCG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60860091 295 + 169600520 ---------GGCCCCTCCCCTCCTTCTGAGTAGAGCGGGGAGAGCGGTTG----AATGGGCAGCTTTCCTTGTGATGCCACAG-GTCCCTCTGGACACCCT----GCCGCCTGGCCACGCTTCCTTTCCCTTTCATCTTTCTCACTGACCAATGGGCTTGCAGCATTAAGGCCACGCCCCTCTTCTGAATT---CTAGTGGGGCCCTGGTTACG-CCTCCTCTGGCTCAGTT-GCACAGCGGCCTGGTAGGTGACTGGAAGCATTCAGCC--GTGCTCACTGGGATTTCGCTGATGTGA------------------CCCCA---ACCCCGC---CTCCCTCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108385891 295 - 171882078 ---------GGCCCCTCCCCTCCTTCTGAGTAGAGCGGGGAGAGCGGTTG----AATGGGCAGCTTTCCTTGTGATGCCACAG-GTCCCTCTGGACACCCT----GCCGCCTGGCCACGCTTCCTTTCCCTTTCATCTTTCTCACTGACCAATGGGCTTGCAGCATTAAGGCCACGCCCCTCTTCTGAATT---CTAGTGGGGCCCTGGTTACG-CCTCCTCTGGCTCAGTT-GCACAGCGGCCTGGTAGGTGACTGGAAGCATTCAGCC--GTGCTCACTGGGATTTCGCTGATGTGA------------------CCCCA---ACCCCGC---CTCCCTCCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21076796 295 -  24206276 ---------GGCCCCTCCCCTCCTTCTGAGTAGAGCGGAGAAAGTGGTTG----CATGGGCAGCTTTCCTTGTGATGCCACAG-GTCCCTCTGGACATGCT----GCCGCCTGGCCATGCTTCCTTTCCCTTTCATCTTTCTCACTGACCAATGGGCTTGGAGCATTAAGGCCACGCCCCTCTTCTGAGTT---CTAGTGGGGCCCTAGTTACG-CCTCCTCTGGCTCAGTT-GCACAGCGGCCTGGTAGGTGACTGGAGGCATTCAGCC--GTGCTCACTGGGATTTCGCTGATGTGA------------------CCCCA---ACCCCGC---CTCCCTCCG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        14373 288 -   1784207 ---------GACCCCTCCCCTCTCTCTGAGT-GGGCGGAGACAGCAGTTG----CATATGCGTTCTTCCTTGTAAGGCCACAG-GTCCCTCTGGATATGCT----GCCACCTGGCCACGCCTCCTTCC-----CATCTTTCTCACTGACCAATTGGCTTGGAGCATTAAGGCCACGCCCCTATTCTGTGTT---CTATTGGTGCCCTGGTTACA-CCT-CTCCGGCTCAGTT-GCACAGCTGCCTGGTAGGTGACTGGAGGCATTCAGCA--GTGCTCACTGGGCTTTCACTGTTGTGG------------------CCGCA---ACCCCGC---CTCCCTACC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114301968 302 - 132174527 ---------GGCCCCACCC--CTCTCAGAGT-GGGCGGGGACAGGAGTTG----CAGGGGCAGCTTTCCTTGGGATGCCACAG-GTCTCTCTGGA----------GCTGCCTAGCCACGCCTCC-TTTCCTTTCATCTTTCTCA-TGACCAATGGGATTGGAGCATGAAGGCCACGCCCCTGTTCTACATT---CTAGTGTGGCCCTGGTTACG-CCTCCTCTGTCTCAGAC-ACACAGCTGCCTGGTAGAGGAGTGGAGCTGCTTACCA--GTGCTCCTTTGAATTGTGCTGATGTGGccccaaccccacctccctcccca---accccac---ctccctccc
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           50445829 251 +  54856640 ---------AGCCCCTCCCCTCTCTCGGAGT-GGGCGGGGACAGCAGTGG----CACGTGCGGCTTTCCTTGTGACACC-----------------------------------------------TCCCCTTCATCTTTCTGATTGACCAATGGGCTTGGAGCATTAAGGCCACGCCCCCATTCTAGGTT---CTAGTGCTGCCCTGGTTACG-CCTCCCCTGGCTCAGTC-ACACAGCTGCCTGCTAGGTGACTGGAGCTGTTTACCA--GTGCTGGCCTGA--TTTGCTGATGTGAC-----------------CCCCA---ACCCCGC---CTCCCTCCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1000811 291 +   1024465 ---------GGCCCCTCC---ATCTCAGAGT-GGGCGGGGACAGGAGTTG----CAGGGGCAGCTTTCCTTGGGATGCCACAG-GTCCCTCCAGAGCTGCT----GCTGCCTGGCCACGCCTCCTTTCCCTTTCATCTTTCTCA-TGACCAATGGGCTTGGAGCATGGAGGCCACGCCCCTATTCTACATT---CTATTGGGGCCCTGGTTACG-CCTCCTCTGGTTCAGTCAACACAGCTGCCTGGTAGGAGAGTGGAGCTGCTTACCA--GTGCTCCCTTGAATTGTGCTGATGTGG------------------CCCCA---accccac---ctccctccc
i cebCap1.NW_016107979v1    C 0 I 109
s otoGar3.GL873533             410276 299 -  31380117 ---------AGCCCCCTCGTCTCCCCAAAGT-GGGCAGGGACAGCGGCTGCGCACGTGCGCAGCTGACGTGGTGACTT------GACCTCTGGGTCCCACC----GCTCCCTGGCCACGCC-CCTTTTCCTTTCATCGTTCTCATTGACCAACGGGCCGGGAGCATTGGGGCCACGCCCACATT-TATGTTTCCCTAGGCTCGCCTTGGTCCCG-CCTGTTCTGGCTCAGTT-GCACTTCTGCGCGGTAGCAAGCGGAAGCAATTTCGCG--GGGGTTGCCGGGATCTC-TTGAAGAGT------------------TCCCGTATATCCCGCTCTCCCCCTCCC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55234593 283 +  61074082 ---------GGTCCCGCCCCCGCCCCGAAGT-GGGCGGGGCCAGAGGCTG----CGCGCGCAGCTTTCATTGTCACTCCACCT-GCTC----------GCG----GCAACCTGACCACGCCCATTCCCCCGTTCATCTTTCTCACCAGCCAATAGAATTGGAGCATTGAGGCCACGCCCACCAGCTGCTAC---CTAGAAACTCTAGGGTCCCT-CCCTTTCTGGCTCAGTC-GCACACCGGCGCGGTGACTGCCGGAAGTGATGCCGCG--GTGGTTGCCGGGATCGCGGTGATGTGG------------------CCACC---CCCCTTA---CCCCTCCC-
i canFam3.chr9              T 21040 C 0
s dasNov3.JH564958             166843 302 +    584178 GGAGAAACCGCCTTTGCCCCTCCCCCAATGT-GGGCGGTGACAGCGGCTG----CGCGCGCAGCCTGCATTGTGACTCC-----ACCCTTCTGGTCACCCTCACAGCTGTCTGACCTCGCCCCCTTTT-CTTTCATCTTTCTCGTTGCCCAATGAGCTGGGAGCATTTAGGCCACGCCCACATTCTGTGTTGC-CTAGGACCGCCCTGGTCCCTCCCTTCCCTGGCTCAGAC-CCGCATCGGCGCGGTAACGAGCGGAAGCAATTGCGAA--GTGTCTGCCGGGATCGCGGTGATGTGG------------------CCCC----CCCTTAC---CCCGCCC--
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=367433.000000
s hg38.chr15_KI270850v1_alt    309024 91 +    430880 CACCCCGCGAT------GTCAGAAAAAACACAACAGGGGAAATTGGCCGCAGCCAAGAAAAAGGTAAAACACACCA----GGTCATGG-CCCCC-AACCCAGC
s panPan2.chr15              76664309 96 +  99763055 GACCCCATGAT------GTTAGAAGAAACTCGACAGAAGAAACTGGCAGCAGCCAAGAAAAAGGTAAAAGCCAAAAAAAAGGTCATGG-CCCCCCAACCTAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        16436 91 -   1709092 CACCCCGCGAT------GTCAGAAAAAACACAACAGGGGAAATTGGCCGCAGCCAAGAAAAAGGTAAAACACACCA----GGTCATGG-CCCCC-AACCCAGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19270897 91 - 121039945 CACCCCACGAT------GTCAGGAAAAGCACAACAGGGGAAATTGGCCGCAGCCAAGAAAAAGGTAAAACGCCCCA----GGTCATGG-CCCCC-AACCCAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60860386 91 + 169600520 CACCCCATGAT------GTCAGAAAAAACACGACAGGGAAAATTCACCGCAGCCAAGAAAAAGGTAAAATGCACCA----GGTCATAA-CCCCC-AACCCAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108386186 91 - 171882078 CACCCCATGAT------GTCAGAAAAAACACGACAGGGAAAATTCACCGCAGCCAAGAAAAAGGTAAAATGCACCA----GGTCATAA-CCCCC-AACCCAAC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21077091 91 -  24206276 CACCCCATGAT------GTCAGAAAAAACACGACAGGGAAAATTCACCACAGCCAAGAAAAAGGTAAAATGCACCA----GGTCATAG-CCCCC-AACCCAGC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        14661 92 -   1784207 CACCCTGCGAT------GTCGGAAACAACACTACAGGGCAAATTGACTGTAGCCAAGAAAAAGGTAAAACGCACCA----GGTCTTGGCCCCCC-CACCCAGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114302270 73 - 132174527 ccacccACCATGGTGATGTCAGAAGAAAATCGCAAGATGAAATTAGCCTCGGCTAGGAAAAAGGTAACATGCA------------------------------
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           50446080 98 +  54856640 CACCCCGCGATGTCAACGTCCACAGAGTCTCGAGAGAGCAAATTGGCAGCAGCCAAAAAAAAGGTAAAACGTACCA----GGTCATGG-CTCCCCAAACCAGC
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             410575 92 -  31380117 CCCCACGGGAT------GTCGGAAGAAACCCGACAGCAAAAATTGGCCTCGGCCAGGAAAAAGGTAAAACACGCCG----GGTCGCGG-CTCCCCGACCCAGC
i otoGar3.GL873533          C 0 I 1
s canFam3.chr9               55234876 92 +  61074082 CGTCCCGGGAT------GTCGGAAGAAACCCGACAGAGCAAATTGGCTGCGGCCAAGAAAAAGGTAAAACGTGCCG----GGTCGCGG-CTCCCTGACCCAGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             167145 91 +    584178 CTTTCCGCGAT------GTCGGAAGAAACCCGAAAGAGCAAATTGGCTGCAGCGAAGAAAAAGGTAAAGCGCGCTG----GGTCGAGG-CTCCC-GACCCAGC
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107979v1      1001102 109 +   1024465 I
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=573402.000000
s hg38.chr15_KI270850v1_alt    309115 136 +    430880 -CACAGATCCCCTCCGATGACAAGACCGGTGCCAGAGTCCATACCACTCCTGAGGCATACCAGATGGGGC---CCCCCAACCCCAGCCCCTCTGGG-CTCCCCCAA-CCAAAGCCTAGTCAGTCAGCCCCACCCCTTCAGCA
s panPan2.chr15              76664405 134 +  99763055 -CAGAGATCCCCTCTGATGACAAGACCACTCCCAGAGTCCATACCACTCCTGAGGCACACCAGGCTTGTC---CCCTCA--CCTGGCGCCTCTGGG-TTCCCCCCA-CCAAAGTCTTGTCAGTCAGCCCCGCCCCTTCAGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        16527 135 -   1709092 -CACAGATCCCCTCCGATGACAAGACCGGTGCCAGAGTCCATACCACTCCTGAGGCATACCAGATGGGGC---CCCCAA-CCCCAGCCCCTCTGGG-CTCCCCCAA-CCAAAGCCTAGTCAGTCAGCCCCACCCCTTCAGCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19270988 136 - 121039945 -CACAGACGCCCTCTGATGACAAGACCGGTGCCAGAGTCCATACCAGTCCTGAGGCATACCAGACTGGGC---CCCCCAACCCCAGCGCCTCTGGG-CTCCCCTGA-CCAAAGTCTTGTCAGTCAGCCCCACCCCTTCAGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60860477 137 + 169600520 -CACAGATCCTCTCCGATGAAAAGACCATTGCCAGAGCCCATACTATTCCTCAGGCATACCGGAATGGGA---CCCCCAACACCAGTGACTCTGGGCTCCCCCCCA-CCAAATTCTTGTCAGTCAGCCCCACCCCTTCAGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108386277 137 - 171882078 -CACAGATCCTCTCCGATGAAAAGACCATTGCCAGAGCCCATACTATTCCTCAGGCATACCGGAATGGGA---CCCCCAACACCAGTGACTCTGGGCTCCCCCCCA-CCAAATTCTTGTCAGTCAGCCCCACCCCTTCAGCA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21077182 136 -  24206276 -CACAGATCCTCTCCGACGACAAGACCATTGCCAGAGCCCATACTATTTCTCAGGCATACCGGAATGGGA---CCCCCAACACCAGCGACTCTGGG-TTACCCCCA-CCAAATTCTTGTCAGTCAGCCCCACCCCTTCAGCA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        14753 136 -   1784207 -CATGGATCCCTTCTGACGACAAGACCATTGCCAGAGTCCATACTACTCCTTAGGCATACTGGACTGGGT---CCCCCATCCTCAGCGCCTCTGGT-CTCCCCCCA-CCAAAGTGTTGTCAGTCAGCCCCACCCCTTCAGCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114302343 139 - 132174527 -CACAGATCCCCTCCGACGGCAAGACCGCTGCCAGCGTCCATAACACTTCTGAGACACACCAGACTGGGCGGGCCCCTAAACCCGGTGCCTCTGGG-CTCTCCCTA-CCAACGTCTTTTCAGTGAGTTCCACCCCTTCAGCA
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           50446178 136 +  54856640 -CACAGATCCCCTCCAATGGCAAGACTGCCGCCAGAGTCCATGCCAGTCCTGAGGCACACGGGACTGGGC---CCCACAACCTTGCAGCCTCTGAG-CCCCCGCCA-CCAAAATCTTGTCAGTCAACCCCATCCTTCCAGCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1001211 138 +   1024465 -CACAGATTCCCTCAGACAGCAAGACCGCTGCCAGAGTCCATAACACTTCTGAGACACACCTGACTGGGTGGGCCCCCAACCCCGGTGCCTCTGAG-CTCCCCCTA-CCAATGTCTTGTCA-TCAGCCCCACCCCTTCAGCA
i cebCap1.NW_016107979v1    I 109 C 0
s otoGar3.GL873533             410668 129 -  31380117 -CGAGGCTCCCCTCCCACGGTAGGACTATGGCCACAGTCTGTGCTACTCCTGAGACACGTAGAGCTAGCC---GCACC-------GCGTCGCTTGG-CTTCTCTCA-CCAAAGTCTTTTCAGCCAGCCCCGCCCCCTCAGTA
i otoGar3.GL873533          I 1 C 0
s canFam3.chr9               55234968 124 +  61074082 -CAAAGG-CCCCTCGGACGGCCGGGCCGTGGCCAGAATCTTTGCTGCCCCTGAGGCACACGGGGCTAGCC---CCGTGA-------CGCCCCTTGG-CGCCCCCCACCCCAAGTCGTCTCAGCCAGTcccgcccccc-----
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             167236 123 +    584178 CCCGACGCCCCCTCCAACCCCCTCACCGTGACCAGAGTCTGAGCCGCCCCTGAGGCACTGGGGA----GA---ACCCCA----TGGCTCTCCTTGG-CGCCCACCT-----GGTCTTCTCAACCAGTCCCGCCCCCCTCG--
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=488475.000000
s hg38.chr15_KI270850v1_alt    309251 104 +    430880 AGCAGCCCAGTACCTGCCCTTGCCAATC---ACCCCAGGGTGACTTTGGGCAGGTGACTCCTGGGGCTC-----CCTGCTCCATAATCAGCCCTCACCTCCTGCCACCCCAA
s panPan2.chr15              76664539 104 +  99763055 AGCAGTCCAGCCTCTGCCCTCGCCAATC---ACCCTGCAGTGACTTTGGGTGGGTGACTGCTGGGGCTC-----CCTGCTCCATATTCGGCCCTCACGTCCTGCTGTCCCAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        16662 104 -   1709092 AGCAGCCCAGTCCCTGCCCTTGCCAATC---ACCCCAGGGTGACTTTGGGCAGGTGACTCCTGGGGCTC-----CCTGCTCCATAATCAGCCCTCACCTCCTGCCACCCCAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19271124 104 - 121039945 AGGAGCCCAGTCCCTGCCCTTGCCAATC---ACCCCAAGGTGACTTTGGGCAGGTGATTCCTGGGGCTC-----CCTGCTCCATACTCGGCCCTCACCTCCTATTGCCCCAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60860614 107 + 169600520 AGCAGCCCAATCCCTGCCCTTGCCGATCTTTACCCCAGGGTGACTTTGGGCGGGTGACACCGCGGGCAC-----CCCGCTCCATACTCGGCCCTCACCTCCTGCTGCCCCAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108386414 107 - 171882078 AGCAGCCCAATCCCTGCCCTTGCCGATCTTTACCCCAGGGTGACTTTGGGCGGGTGACACCGTGGGCAC-----CCCGCTCCATACTCGGCCCTCACCTCCTGCTGCCCCAA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21077318 107 -  24206276 AGCAGCCGAATCCCTGCCCTTGCCGATCTTTACCCCAAGGTGACTTTGGGTTGGTGACTCCTGGGGCTC-----CCCGCTCCATACTCGGCCCTCACCTCCTGCTGCCCCAA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        14889 104 -   1784207 AGCAGCCCAGTCCCTGCCCTTGCCAGTC---ACCACAGAGTGACTTTGGGTGGGTGACTCCTGGGGCTC-----CCTGCTCCATTCTCGACCCTCACCTCCTGCCGCCCCAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114302482 104 - 132174527 AGGAGCCCAGCCCCTGCCCTTGCCAATC---ACCCCAGGGTGACTTTGGATGTGTAACTCCTGAGGCTC-----CCCATTCCCTGCTTGGGCCTCACCTTTTCCTGCTCCAT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           50446314 104 +  54856640 AGCAGCTCCGTCCCTGCCATCGCCAATC---ACCCCAGAGTGACTTTGGGCGGGTGACTCCTGGGACTC-----CCCACTCCATACGTGGCCCTCACCTCCTGCCTCCCCAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1001349 104 +   1024465 AGGAGCCCAGCCTCTGCCCTTGCCAATC---ATCCCAGTGTGACTTTGGATGTGTAACTCCTGAGACTC-----CCTGCTACCTACCTGGGCCTCACCTATTCCTGCCCCGA
i cebCap1.NW_016107979v1    C 0 C 0
s canFam3.chr9               55235092 103 +  61074082 ggctgcccagcccccgccctcgcccgcc---gcccc-cggTGACTTTGGGCTGGTGACTCCCCGGGCTC-----CCTGCTCCAGGTTTGGCCCTAGCCTTCTGCCACCCAGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             167359 107 +    584178 -GCCGCCCAGCCCTCGCCCTAGCCGGTC---GCTCCCAGGTGACTTTGGGCTCTTGAC-CCCGGGGCACCGGCACCGGCACCGGGAGCAGCCCTCGCCCCCTGCCGCCCAGA
i dasNov3.JH564958          C 0 C 0
e otoGar3.GL873533             410797   0 -  31380117 C
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=205112.000000
s hg38.chr15_KI270850v1_alt    309355 63 +    430880 GCCCAACCTCCCTGGGCTCTTTGGGCTTGCGTCTCCCAGGACCTGG-TCCCCCAGCCCCAGGCC
s panPan2.chr15              76664643 64 +  99763055 GCCCAACCTCTCTGGGTTCTTTGGGTTCACCTCTCCAAGGACCTGGGTCCCCCAGCCCCAACCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        16766 64 -   1709092 GCCCAACCTCCCTGGGCTCTTTGGGCTTGCGTCTCCCAGGACCTGGGTCCCCCAGCCCCAGGCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19271228 64 - 121039945 GCCCAACCTCCCTGGGCTCTCTGGGCTTGCGTCTCCCAGGACCTGGATCTCCCAGCCCCAGGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60860721 64 + 169600520 GCCTGACCTTCCTGGGCTCTTTGGGCTTGCGTCTCCCAGGACCTGGGTACCCCAGTCCCAGGCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108386521 64 - 171882078 GCCTGACCTTCCTGGGCTCTTTGGGCTTGCGTCTCCCAGGACCTGGGTACCCCAGCCCCAGGCC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21077425 64 -  24206276 GCCTGACCTTCCTGGACTCTTTGTGCTTGTGTCTCCCAGGACCTGGGTACCCCAGCCCCAGGCC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        14993 64 -   1784207 GCCCAACCTCCCTGGGCTCTTTGGGCTTGCTTCTCCTAGGACCTGGGTCCCCCAGCCCCAGGCC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114302586 58 - 132174527 GTCTGACCTCCCTGGGCTCTGTGGGCTCATGTCTCTAAGGACCTGGGTCTCCCAGC------CC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           50446418 64 +  54856640 GATCAACCTCCCTGGGCTCTTTGGGCTTGTGTCTCTAAGGACCAGGGGTCCCCAGTCCTAGGCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1001453 58 +   1024465 GCCTGACCTCCCTGGGCTCTGTGGGCTCATGTCTCTAAGGACCTGAGTCTCCCAGC------CC
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             410797  9 -  31380117 GCCCAAC-------------------------------------------------------CC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55235195 26 +  61074082 --------------------------------AGCGGAGGACCTGGGCTCTCCAGGCC------
i canFam3.chr9              C 0 T 116
s dasNov3.JH564958             167466 19 +    584178 ACCGGGCCACCTTGGGCTC---------------------------------------------
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=195274.000000
s hg38.chr15_KI270850v1_alt    309418 40 +    430880 CT-GCCCTCACCAGTCATCCCTGGGTGGCTTTGGGCTGGTG
s panPan2.chr15              76664707 41 +  99763055 CCCAGCATCGCCAGTCATCCTGGGGTGACTTTGGGCTGGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        16830 40 -   1709092 CT-GCCCTCACCAGTCATCCCTGGGTGGCTTTGGGCTGGTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19271292 40 - 121039945 CC-ACCCTTGCCAGTCATCCCTGGGTGACTTTGGGCTAGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60860785 40 + 169600520 CC-ACCGTTGCCAGTCATCCTTGGGTGACTTTTGGCTGGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108386585 40 - 171882078 CC-ACCGTTGCCAGTCATCCTTGGGTGACTTTTGGCTGGTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21077489 40 -  24206276 CC-ACCGTCGCCAGTCGTCCTTGGGTGACTTTTGACTGGTG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        15057 40 -   1784207 CC-GCCCTCACCAGTCGTCCCTGCGTGACTTTGGGCTGGTG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114302644 40 - 132174527 CC-GCCCTCACCAATCATTTCTGGGTGACTTTGGGCTGGTG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           50446482 40 +  54856640 CC-ACCCTCACCAGCCATCCCCGGGTGACTTTTGGCTGGTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1001511 40 +   1024465 CC-ACCCTCATCAGTCATTTCTGGGTGACCTTGGGCTGGTG
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             410806 40 -  31380117 CT-GCCCTCGCCAGTTGCCCCTGGGTGACTTTGGACTGATG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55235105 39 +  61074082 cc-gccctcgcccgccgcccccg-gTGACTTTGGGCTGGTG
i canFam3.chr9              T 116 I 77
s dasNov3.JH564958             167485 16 +    584178 ----------CCGGCCAAC-----------TTGGGCT----
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=2650360.000000
s hg38.chr15_KI270850v1_alt    309458 535 +    430880 ACTCCCGGGGCTACCTACTGCAGACTCTGCCCTCCCCTCCTGCTGCCCCAAGCTCGACCTCCCTAGGCTTCTTGGGCTGGCGTCTCTGAGGACCTGGGTCGAAACCGTGTGTTTCCCTCCCCCATCGTGGAGCAGCGACTCGGGCATCGCGCTGATGTGGT---CCCCTCCCCTGGGAGGA---GTGGAATGCAATGATGTCACAGTGCCCCTAGGAACTGTCATTACTGCTGCAAG-ACCGGCCTTTGATCTTACAACCCAGTCCCCTAAGTTTTCTCACCCCATTTCTGGTTCCTCTGGTTGCAGCACAAATTTCCAGCTGGAAGGGGAGTGGAGACTATGGGACCTAGGAGCAAGAGGTTTCAGGCTGCCTTACTCC--------CTCAA--CATAGACATTGACAGTGGGAAAAATCCTACACTTCCCCTGT-GAGCTCAAAATGTTCACAGTATCTCTGGGTGGCAAT-GGGAGA----ATGGG-----TTTGGTTTGGTTTTTTCCCAGGCTTCTACTTTCCAGAGAGACTTTAACA-T-TTTTTTCTGAG--------------------TTCTCCAC--------------------
s panPan2.chr15              76664748 557 +  99763055 ACTCCTGGGGGTTCCCTGAGCAGACTCTGCTCTCCCCTCCTGCTGACCCAAGCCCGACCTCCCTGGGCTCTCTGGACTGGCATCTCCAAGGACCTGGGTCCCAGCCCTACACCCCCCTCCCCCATCGTGGATCGGCAACTCGGCCATTGCACTGATGTGGTTCCCCCCACCCCCAGGAGGA---GTGGAATGTAGTGATGTCACAGTCCCCCTAGTAACTGTCATTACTGCTGCAAG-ACCGGACTTTGATCTTACAACCCGGTCCCCTAAGCATTCTCACCCCATTTCTGGTTCCTCTGGTCACAGCACAAATTTCCAGCTAGAAGGGAAATGGGGACTATGGGACCTAGGTGCAAGAGGTTTCAGGCTGCCTTACTCC--------CTTCA--CATAGACATTGACAGTGTGAAAAG-CCTACACTTCCCCCAT-GAGCTCAAAACGTTGACAGTGTCTCTGGGTGGTAAT-GGGAAA----ATGGG-----TTTGGTTTGGTTTTCTCCCAGGCTTCTACTCTCCAGACAGACTTCAACA-T-TTTTTTCTGAGTTCTCCACCTCATATTCTAATTCTCCAC--------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        16870 534 -   1709092 ACTCCCGGGGCTCCCTACTGCAGACTCTGCCCTCCCCTCCTGCTGCCCCAAGCTCGACCTCCCTAGGCTTCTTGGGCTGGCGTCTCTGAGGACCTGGGTCGAAACCGTGTGTTTCCCTCCCCCATCGTGGAGCAGCGACTCGGGCATCGCGCTGATGTGGT---CCCCTCCCCTGGGAGGA---GTGGCATGCAATGATGTCACAGTGCCCCTAGGAACTGTCATTACTGCTGCAAG-ACCGGCCTTTGATCTTACAACCCAGTCCCCTAAGTTTTCTCACCCCATTTCTGGTTCCTCTGGTTGCAGCACAAATTTCCAGCTGGAAGGGGAGTGGAGACTATGGGACCTAGGAGCAAGAGGTTTCAGGCTGCCTTACTCC--------CTTAA--CATAGACATTGACAGTGGGAAAAG-CCTACACTTCCCCTGT-GAGCTCAAAATGTTCACAGTATCTCTGGGTGGCAAT-GGGAGA----ATGGG-----TTTGGTTTGGTTTTTTCCCAGGCTTCTACTTTCCAGAGAGACTTTAACA-T-TTTTTTCTGAG--------------------TTCTCCAT--------------------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19271332 521 - 121039945 ACTCCTCGGGCTCCCTACTGCAGACTCTGCC-------------GCCCCAAGCTTGACCTCCCTGGGCTTCTTGGGCTGACGTCTCCGAGGACCTGGATCAAAACCCTGTGTTTCCCTCCCCCATTGTGGAGCGGTTACTCGGGCATCGTGCTGATGTGGT---CCCCTCCCCTGGGAGGA---GTGGAATGTAGTGATGTCACAGTCCCCCTAGGAACTGTCATTACTGCTGCAAG-ACCGGCCTTTGGTCTTACAACCCAGTCCCCTAAGTTTTCTCACCACATTTCTGGTTCCTCTGGTTGCAGCATAAATTTCCAGCTGGAAGGGGAGTGGGGACTATGGGGCCTAGAAGCAAGAGGTCTCAGGCTGCCTTACTCC--------CTTCA--CATAGACGTTGACAGTGGGAAAAG-CCTCCACTTCCCCTGT-GAGCTGAAAACATTGACAGTATCTCTGGGTGGCAAT-GGGAGA----ATGGG-----TTTGG-TTGGTTTTCTCCCAGGCTTCTACTTTCCAGAGAGACTTTAACATT-TTTTTTCTGAG--------------------TTCTCCAC--------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60860825 531 + 169600520 ATTCCCGGGGCTCCCTACTGCGGACTCTGCCCTCCCCTCCTGCTGCCCCAAGCTCCACCTCCCTGGGCTCCTTCGGCTGGTGTCTCCAAGGACCTGGGT-TGAACCCTGTGTTTCCCTCCCCCATCATGGAGTGGCGACTCGGGCATCACGCTGATGTGGT---CCCCTCCACTGGGAGGA---ATGGAATGTAGTGATGTCACAGTCCCCCTAGGAACTGCCATTGCTGCTGCAAG-ACCAGCCGTTGATCTTACAACCCAGTCCCCTAAGTTTTCTCACCCCATTTCTGGATCCTCTGGTCACAGCACAAATTTCCAGTTGGAAGGGGAATGGGGACTATGGGACCCAGGAGCAGGAGGTTTCAGGCTGCCTTACTCC--------CTTCA--CATAGACATTGACAGTGGGAAAAG-CCTCCATTTCCCCTGT-GTGCTCAAAACCTTGACAGTATCTCTGGGTGGCCAT-GGGAGA----ACGGG-----TTTGGTTTGGTTTTCTCCCAGGCTTCTACTTTGC--AGAGACTTTAACA-T-TCTTTTCTGAG--------------------TTCTCCAC--------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108386625 534 - 171882078 ATTCCCGGGGCTCCCTACTGCGGACTCTGCCCTCCCCTCCTGCTGCCCCAAGCTCCACCTCCCTGGGCTCCTTCGGCTGGTGTCTCCAAGGACCTGGGTCCGAACCCTGTGTTTCCCTCCCCCATCATGGAGTGGCGACTCGGGCATCACGCTGATGTGGT---CCCCTCCACTGGGAGGA---ATGGAATGTAGTGATGTCACAGTCCTCCTAGGAACTGCCATTACTGCTGTAAG-ACCAGCCGTTGATCTTACAACCCAGTCCCCTAAGTTTTCTCACCCCATTTCCGGATCCTCTGGTCACAGCACAAATTTCCAGTTGGAAGGGGAATGGGGACTATGGGACCCAGGAGCAAGAGGTTTCAGGCTGCCTTACTCC--------CTTCA--CATAGACATTGACAGTGGGAAAAG-CCTCCACTTCCCCTGT-GTGCTCAAAACGTTGACAGTATCTCTGGGTGGCCAT-GGGAGA----ACGGG-----TTGGGTTTGGTTTTCTCCCAGGCTTCTACTTTGCAGAGAGACTTTAACA-T-TCTTTTCTGAG--------------------TTCTCCAC--------------------
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21077529 534 -  24206276 ATTCCTGGGGCTCCCTACTGCGGACTCTGCCCTCCCCTCCTGCTGCCCCAAGCTCGACCTCCCTGGGCTCCTTCAGCTGGTGTCTCCAAGGACCTGGGTCCGAACCCTGTGTTTCCCTCCCCCATCATGGATTGGTGACTTGGGCATCACGCCGATGTGAT---CCCTTGCACTGGGAGGA---ATGGAATGTAGTGATGTCACAGTCCCCCTAGGAACTGTCATTACTGCTGCAAG-ACTAGCCTTTGATCTTACAACCCAGTCCCCTAAGTTTTCTCACCCCATTTCTGGATCCTCTGGTCACAGCACAAATTTCCAGTTGGAAGGGGAATAGGGACTATGGGACCCAGGAGCAAGAGGTTTCAGGCCGCCTTACTCC--------CTTCA--CATAGACATTGACAGTGGGAAAAG-CCTGCACTTCCCCTGT-GAGCTCAAAACGTTGACAGTATCTCTGGGTGGCCAT-GGGAGA----ACGGG-----TTTGGTTTGGTTTTCTCCCAGGCTTCTACTTTGCAGAGAGACCTTAACA-T-TCTTTTCTGAG--------------------TTCTCCAC--------------------
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        15097 534 -   1784207 ACTCCTGGGGCTCCCTACTGCAGACTCTGCCCTCCCCTCCTGCTGCCCCAAGCTCGACCTCCCTGGGCTCCTTGGGCTGGCGTCTCCAAGGACCTGGGTCTGAACCCTGTGTTTCCCTCCCCAATCGTGGAGCAGTGACTTAGGCATCATGCTGATGTGGT---CCTCTCCCCTGGGAGGA---ATGGAATGTAGTGATGTCACAGTCCCTCTAGGAACTGTCATTACTGCTGCAAG-ACCAGCCTTTCATCTTACAACCCGATTCCCTAAGTTTTCTCACCCCATTTCCGGATCCTCTGGTTGCAGCATAAATTTCCAGTTGGAAGGAGAATGGGGACTATGGGACCCAGGAGCAGGAGGTTTCAGGCTGCCTTACTCC--------CTTAA--CATAGACATTGACAGTGGGAAAAG-CCTGCACTTCCCCTGT-GAGCTCAAAACGTTGACAGTATCTCAGGGTGGCCAT-GGGAGA----ACGGG-----TTTGGTTTGGTTTTCTCCCAGGCTTCTACTTCCCAGAGAGACTTTAACA-T-TTTTTTCTGAG--------------------TTCTCCAT--------------------
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114302684 524 - 132174527 ACTCCTGGGAATCCCTGCTGCAGACTCTGCCCTCCCCTCCTACTCCCCCAGCA-CAACCTCCCAGTGCTCTTTGGGCTGGCATCTCCAAGGACCTGAATCCCAGCCATGCGTCCCCCTCCCCCATCGTGGAGCAGTGACTCAGGCATGTCCTTGATGTGGT---CCCCTCCCCCACCAGGAGGAGTGGAATGTAGTGATGACACCATCCCCCTAGGAGCCATCATTCCTGCTACAAA-ACCAGCCTTTGATCTTACCGCCCAGTCCCCTAAGCATTCTCATAGCATT-----------TGGTCCCAGCACAAATTTCCAGCTGGTTGGGGAATGTGGACTATGGGACCTAGGAGCGAGAGGTTTCAGGCTGCC-CACTCC--------TTTAA--CATAGACCTTGACAGTGTGAAAAG-CCTACACTTCCCTCGT-GAGCTCAAAACATTGACAGTGTCTCTGGGTGGCAAT-GGGAGA----ATGGG-----TTTGGTTTGGTTTTCTCTCAGGCTTCTACTCTCCAGAGAGACTTTGACG-T-TACTTTCTGAG--------------------TTCTCCAC--------------------
i calJac3.chr10             C 0 I 20
s saiBol1.JH378108           50446522 528 +  54856640 ACTCCTGGGGCTCCCTGCTGCAGGCTCTGCGCTCCCCTCCTGCTACCCCAACCTCGACCTCCCAGGGCTATTTCAGCT-GCGTCTCCAAAGGCCTGGGTCCCAACCCTGTGTTTCCCTCCCCCATCATGGAGCAGCACCTTGGGTGTGGCAAGGATGTGGT---CCCCTCCACCGGTAGGA------GAATGTCTTGATATCACAATCTCTCCATGAACTGTCATTACTGTTACAAG-ACCTGACTTTGATCTTACGACCCAGTCCCC-ATACGTTCTCATCCCATTTCTGGTTCCTCTGGTCACAGAACACATTTCCAGCTGGAAAGGGAATGGAGACCATGGGACCTAGGAGCAAGAGCTTTCAGGCTGCCTCACTCC--------CTTAA--CATAGACACTGACAGGGTGAGAAG-CCTACACTTCCCCTGT-GAGCTCAAAATGTTACCAGTATCTCT-GGTGCCAAT-GGAAGA----ATGGG-----TTGGGCTTGGTTTTCTTCCAGGCTTCTACTCTCCAGAGAGACTTTAACA-T-TTTTTTCTGAG--------------------TTCTCCAC--------------------
i saiBol1.JH378108          C 0 I 5938
s cebCap1.NW_016107979v1      1001551 521 +   1024465 ATTCCTGGGAATCCCTGCTGTAGACTCTGCTCTCACCTCCCGCTACCCCATGGTTGACCTCCCTGTGCTCTTTGGGCTGGTGTCTCCAAGGACCTGGGTCCCAGCCCTGCATCCCCCTCCCCCATCATGGAGCAGTGACTCAGACATCTCCTTGATGTGGT---CCCCTCCCCCAGGGGGA---GTGGAATGTAGTGATGTCACAGTCCCCT------ACGTCATTACTGCTACAAG-ACCAGGCTTCGATCTTGGGACCTAGTCCCCTAAGCATTCTCATCCCATTTCTGGCTCCTCTGGTCCCAGCACAAATTTCCAGCTGGAAGGGGAATGG-------GGGACCTAGGATCAAGAGGTTTCAGGCTGCCTCACTCC--------CTTAA--CGTAGACATTGACAGTGTGGAAAG-CCTACACTTCCCCTGT-GAGCTCAAAACGTTGACAGTGTCTCTGGGTGGCAAT-GGGAGA----ATGGG-----TTTGGTTTGGTTTTCTCTCAGGCTTCTACTCTCCAGAGAGACTTTCACG-T-TTCTTTCTGAG--------------------TTCTCCAC--------------------
i cebCap1.NW_016107979v1    C 0 I 20
s otoGar3.GL873533             410846 510 -  31380117 ACTCCAGGGGGTCCTTGCTCTGAACTCAGTCCTAGCTTCCCACTGCCCCAAATTGCCTCTTCCTGAGCTCTGTGGGCTCCCATCTTCAAGGACCTGGATCCCGGCCCTAGGTTCCCCTCCCCCATCGCGGAGCAGAGAGTGGGTCGTA-----GGTAGGGT-----------------GGA---GTGCAGTGTAGTTACCTCGCAGTCCCCCTCGGAGCTGTCATTACTGTCGAGAG-CCTGGCCTTTGATCTTAAGACCCAATACCCCGAGTGT--TCATTCCATTTCTGGTTTCTCTGGTCAAGGCACAGATTTCTAATTGGAAGGGGACTAAGAACTATGGAATTTAAGACCGAGAGGTTTCAGGCT-CCTTATTCC--------CTTAA--CTTAAATATTGGCAGTGCG-AAAG-CCTACACTTCACCAGTAGAGCTGGAAACCTTGACAGTATCTCTGGGTTGCAAT-GGGAGA----ACGGG-----TTGGGTTTGCTTTTCTCCCAGGTTTCTACGCTCCAGAGAGAC--TAAAA-T-TTTTTACTGAG--------------------TTCTCTAC--------------------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55235221 438 +  61074082 GGTCCCGG--------------------------------------------------------------------------TGTCCAGGGACCTCGGTCCCAGCCCTGCTTTCCCCTCCCCCACCGCGGAGCGGCGACTCGGGCGT----------TGGT------------AGGGAGGA---GGGGAATGTAGTTACGTCACAATCCCCCTCGGAACTGTCATTAGCGCCAGGAGCCCCGGTGTTTGGTCTTACTACCCAGTCTCCCA-GTGTTTTCATACCCTTTCCGGTTTCTCCGGTCGCGGCGCAAATTTCCAGCTTGAAGGGGACTGGGGACTATGGGACCTAGGTGGGAGAGGTTTCAGGAGCCCTTACTC------------------TAGACTGTACCCCATCCTTAAA-CATTGACTACACCAGT-GATCATGGAACATTGGTAACACCTT--GGTGACAATGGGGAGA----GTGTGTTTTCTTTGGTATGGTTTCCTTTTAGGTTTCTACTGTCCAGAAAGACTTTCACA-TATTAAATCTGAA--------------------TTCTCTAC--------------------
i canFam3.chr9              I 77 I 20
s dasNov3.JH564958             167501 457 +    584178 ----------------------------------------------CCCGA-------------------------------TCTCCCGGGACCTCGGTACGGGCGCTGCGCTGCCCTCCCCCACCGCGGAGAGGCGACTCGACGGT----------GGGT------------CAGGAGAG---ACGGAAAGCACTTACGTC------------GTAACTATCATAATCGCCGCAGG-ACCAGCCTTTGATCTTCCGACCCAGACCCCTT-GTGTGTTCATCCC-CTTCCGGTTTCTGTGGTCGTCCCGCAGGTTTTCAGCCTGAAGGGGCCTCTGGACTATGGGGCATAGGCCC-AGAGGTTTCCAACTTCCATATGCTGGTCTGTACTGCATCCTCAGACATTGACAGGTTGAAAAG-CCCAAATTTCACCCGT-GATCTTGAAACGTTTACAACATCACTGGGTGACAGTGGGGAGAGCCTATTTG-----TTTGCTTTGGTTTTCTCCCAGGTTTCTACTCTCCAGAGAGACTTTCAAA---AATTTTTTAAG--------------------TTCTCTGCCTCACGTTCTAATTCCCTGT
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I

a score=1286590.000000
s hg38.chr15_KI270850v1_alt    309993 294 +    430880 GGTTCTGGGACCAGA--------------CTGCCCTTCAGTCAGTGGCCTCTGAAGTGAGATTTGCTCATCTTCTGTGGAATAGATCTTGGGAAACTGAACTTGACAGC-T-TGAATCTTCCTCATATCG---TCTCAACCTGGGGTACTTTGAGTgccacaggataaatgtgggacatctttctgaagcatcattttcccttgaTTCTCTT----GAGA-----AAAT-----------GCATTAATGTACTTAGGGATGACAGACACATAGGTTTCCAAGCGTATACCAGACTTCGCTCTGAAATGAGGCTTGG-------GTTGTCCTCTTTCTGAT
s panPan2.chr15              76665305 298 +  99763055 GGTTCTGGGACCAGA--------------CTGCCCTTCAGTCAGTGGTCTCTGAAGTGAGATTTGCTCATCTTCTGTGGAATAGATCTTGGGAAACTGAACTTGACAGC-T-TGAATCTTCCTCATATCA---TCTCAACTTGGGGTACATTGAGTgccacaggataaatgtgggagatctttctgaagcatcagtttcccttgattctcttgagagaga-----aaaa-----------gcattaATGTACTTAGGGATGACCCTCACATAGGTTTCTAAGAGTATACCAGACTTCTCTCTGAAATGAGACTTGG-------GTTGTCCTCTTTCTGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        17404 294 -   1709092 GGTTCTGGGACCAGA--------------CTGCCCTTCAGTCAGTGGCCTCTGAAGTGAGATTTGCTCATCTTCTGTGGAATAGATCTTGGGAAACTGAACTTGACAGC-T-TGAATCTTCCTCATATCG---TCTCAACCTGGGGTACTTTGAGTgccacaggataaatgtgggacatctttctgaagcatcattttcccttgaTTCTCTT----GAGA-----AAAT-----------GCATTAATGTACTTAGGGATGACAGACACAGAGGTTTCCAAGCGTATACCAGACTTCGCTCTGAAATGAGGCTTGG-------GTTGTCCTCTTTCTGAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19271853 294 - 121039945 GCTTCTGGGACCAGA--------------CTGCCCTTCAGTCAGTGGTCTCTGAGGTGAGATTTGCCCATCTTCTGTGGAATAGATCTTGGGAAACTGAACTTGACAGC-T-TGAATCTTCCTCATATCA---TCTCAACCTGGGGTACCTTGAGTgccacaggataaatgtgggacatctttctgaagcatcattttcccttgaTTCTCTT----GAGA-----AAAA-----------TCATTAACGTACTTAGAGATGACAGACACATAGGTTTCCAAGCGTATACCAGACTTCTCTCTGAAATGAGGCTTGG-------GTTGTCCTCTTTCTGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60861356 294 + 169600520 GGTTCTGGGACCAGA--------------CCGCCCTTCAGTCAGTGGTCTCTGAAGTGAGATTTGCTCATCTTCAGTGGAATAGATCTTGGGAAGCTGAAGTAGATAGC-T-TGACTCTTCCTCATATCA---TCTCAACCTGGGGTACTTTGAGTgccacaggatgaatgtgggacatctttctgaagtatcattttcccttgaTTCTCTT----CAGA-----TCAA-----------ACATTAATGTCCTCAGGGATGACAGTCACATAAGTTTCAAAGCATATACCAGACTTCTCTCTGAAATCAGGCTTGG-------GTTGTCCTCTTTCTGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108387159 294 - 171882078 GGTTCTGGGACCAGA--------------CCGCCCTTCAGTCAGTGGTCTCTGAAGTGAGATTTGCTCATCTTCAGTGGAATAGATCTTGGGAAGCTGAACTAGATAGC-T-TGACTCTTCCTCATATCA---TCTCAACCTGGGGTACTTTGAGTgccacaggatgaatgtgggacatctttctgaagcatcagtttcccttgaTTCTCTT----CAGA-----TCAA-----------ACATTAATGTCCTTAGGGATGACAGTCACATAGGTTTCTAAGCATATACCAGACTTCTCTCTGAAATCAGGCTTGG-------GTTGTCCTCTTTCTGAA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21078063 294 -  24206276 GGTTCTGGGACCAGA--------------CTGCCCTTCAGTCAGTGGTCTCTGAAGTGAGATTAGCTCATCTTCAGTGGAGTAGATCTTGGGAAGCTGAACTAGATAGC-T-TGACTCCTCCTCATATCA---TCTCAACCTGGGGTACTTTGAGTgccacaggatgaatgtgggacatctttctgaagcatcattttcccttgaTTCTCTT----CAGA-----TAAA-----------ACATTAATGTCCTTAGGGATGACAGTCACATAGGTTTCCAAGCATATACCAGACTTCTCCCTGAAATTAGGCTTGA-------GTTGTCCTCTTTCTGAA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        15631 294 -   1784207 GGTTCTGGGACCAGA--------------CTACCCTTCAGTCAGTGGTCTCTGAAGTGAGATTTGCTCATCTTCTGTGGAACAGATCTTGGGAAACTGAACTTGACAGT-T-TGAATCTTCCTCATATCA---TCTCAACCTGGGGTACTTTGAGTgccacaggataaatgtgggacatctttctgaagcatcattttcccttgaTTCTCTT----GAGA-----AAAA-----------ACATTAATGTACTTAGGGATGACAGTCACATAGGTTTCGAAGTATATACCAGACTTCTCTCTGAAATCAGGCTTAG-------GTTGTCCTCTTTCTGAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114303228 295 - 132174527 GGTTTTGGGACCAGA--------------CTGCCCTTCAGTCACTGGCCTCTGGAGTGAGATTTGCTCATCCTCTGTGGAACAGATCTTGGGAAATTGAAACTGACAGC-T-TGAATCTTCCTCAAATCA---TTGCAACTCAGGCTACTTTGAATgccacgggataaacatgggacatctttctgaagcatcagtttcccttgagtctcta----gagagag-caaaa-----------gcattaATGTACTTAGGGATGACAGTCACATAGGTTTCTAAGAGTATACCAGACCTCTCTC---AATAAGACTTGG-------GTTGTCGTACTTCTGAT
i calJac3.chr10             I 20 C 0
s cebCap1.NW_016107979v1      1002092 298 +   1024465 GGTTGTGGGACCAGA--------------CTGTCCTTCAGTCAGTGGCCTCTGGAGTGAGATCTGCTCATCTTCTGTGGAACAGATCTTGGGAAATTGAAACCGACAGC-T-TGACTCTTCCTCATGTCA---TCTCAACTTAGGCTACATTGAATgccatgagataaacatgggacatctttctgaagcatcagtttcccttgagtctctt----gagacag-caaaa-----------acgttattGTACTTAGGGATGACAGTCACATCGGTTTCTAAGAGTATACCAGACTTGTCTCTGAAATGAGACTTGG-------GTTGTCCTCTTTCTGAT
i cebCap1.NW_016107979v1    I 20 C 0
s otoGar3.GL873533             411356 295 -  31380117 -----------------------------CTCATATTCACTTAGTGCTCTGTGGAATGAGGTCTACTTCTCTTCTGTAGAACAGATCCTGGGAAACTGAACTTCACCGCTT-TGAATCTTCCCCACATTACCTTCTCAACATGAGGTTCTCTGAGTGCCACAGGATTACTATGGGAGAGCTTTCCAAAGATTCAGTTTTGCTTGATTCTCTG----GAGAGAGAAAAAA-----------ACATGAATATACTTAGGGATGACATTTGCATATACTTGTAAGATTACAATAGACCTTTCTCTGAAATGATGCTTGGCTTGTCCCTTGTCCTTTTTCTGTT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55235679 313 +  61074082 GATTCT-GGACCAGAGTCCCCCCCGCCTCCCCCCCATCAATCAGTGCTCTTTGGAGTGAGATCTGCTTATCCTCTGTGGAACTGATCTCTGGAACCTGAATTTCATAGG-TGGGAATCTTCCCCAAATCATCATCTCAACATGGAGTGTTCTGAGGGCCACAGGAT-AATATAGAA-------CTGAAGCATCAATTGTGCTTGATTCTTTT----GAGA-----AAGAAAAATCCTTTTATAGTAATGTACT-AGGGATGACATTTGTGTAGATTTGTAAGATTATGATAGACTTCTCTCTGAAATGGTGCTTGG-------ATTGTCCTCTTTCTGTT
i canFam3.chr9              I 20 C 0
s dasNov3.JH564958             167958 161 +    584178 GATTCTGGGACCAGA--------------ACTCCCCTCAATCAGTGCTCTTTAAAGTGAGATTTGCTAATCT---GTGGAAGAGATCCTGGGAAACTGA-----------A-TGAA-----------------TTTC-ACCTAGGGTACTCCGA-------------AGAGTG------------------------------------CTT----GGGA-----TATA-----------AAGTACAGATATTTAAG-----------------------------------------------AAAGAGTCCTGG----------------TATCTGAT
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=358612.000000
s hg38.chr15_KI270850v1_alt    310287 84 +    430880 AAATTCCCAGATTTAATAGAAA---------AG--------CTGCCTTCTGCCATGAGGACACATTGATATGAAAGTGTGAGAGGTACTGGTACGCTTCTT
s panPan2.chr15              76665603 83 +  99763055 AAA-TCCCAGATTTAACAAAAT---------AG--------CTGCCTTCTGCCATGAGGACACATTGATATAAAAGTTTGAGAGATACTGGTGCACTTCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        17698 84 -   1709092 AAATTCCCAGATTTAATAGAAA---------AG--------CTGCCTTCTGCCATGAGGACACATTGATATGAAAGTGTGAGAGGTACTGGTGCGCTTCTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19272147 81 - 121039945 AAATTCCCAGATTTAACAGAAA---------AG--------CTGCCTTCTGCCATGAGGGCACATTGATATGAAAGTGTGAGAGGTACTGGTGCA---CTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60861650 84 + 169600520 AAATTCCCAGATTTAACAGAAA---------AG--------CTGGCTTCTGCCATGAGGACACATTGATATGAAAGTGTGAGAGGTACTGGTGCACTTCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108387453 84 - 171882078 AAATTCCCAGATTTAACAGAAA---------AG--------CTGCCTTCTGTCATGAGGACACATTTATATGAAAGTGTGAGAGGTACTGGTGCACTTCTT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21078357 84 -  24206276 AAATTCCCAGATTTAACAGAAA---------AG--------CTTCCTTCTGCCATGAGGACACATTGACATGAAAGTGTGAGAGGTACTGGTGCACTTCTT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        15925 84 -   1784207 AAATTCCCAGATTTAACAAAAA---------AG--------CTGCCTTCTGCCATGAGGACACATTGATATGAAAGTGTGAGAGGTACTGGTGCACTTCCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114303523 84 - 132174527 GAATTCCCAGATTTAACAGAAA---------GG--------CTGCCTTCTGCCATGAGGACACATTGATATAAAAGTGTGAGAGGTACTGGTGCTCttctt
i calJac3.chr10             C 0 I 299
s cebCap1.NW_016107979v1      1002390 84 +   1024465 GAATTCCCAGATTTAACAGAAA---------GG--------CTGCCTTCTGCCATGAGGACACATTGATAGAAAAGTGTGAGAGGTGCTGGTGCTCTTCTT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             411651 92 -  31380117 AGTTTCCTAAGTTCACTAGGGATATACTTTCAC--------TACCCTCCTGCCATTAGGGCACATTGACTTACATTTTTAAGACGTACTGGTGTGCAGCT-
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55235992 92 +  61074082 AGGTTTCCACATTCACTAGGTG---------TGTGCCTTTACTGCCTTCTGCCATCAGGATACGTTGATATAAAAGTTTGATAAATACCAATGTGCAGCTT
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958             168119  0 +    584178 C
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=37636.000000
s hg38.chr15_KI270850v1_alt    310371 14 +    430880 CACGCTAGCAGACC
s panPan2.chr15              76665686 14 +  99763055 CACACTAACAGACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        17782 14 -   1709092 CACACTAGCAGACC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19272228 14 - 121039945 CACACTAACAGACG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60861734 14 + 169600520 CACACTAACGGACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108387537 14 - 171882078 CACACTAACGGACA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21078441 14 -  24206276 CACACTAACGGACA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        16009 14 -   1784207 CACACTAACAGATG
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1002474 13 +   1024465 AACACTAACAGAC-
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             411743 10 -  31380117 ----CTCACAGATG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55236084  9 +  61074082 -----TAACAGATT
i canFam3.chr9              C 0 C 0
e calJac3.chr10             114303607 299 - 132174527 I
e dasNov3.JH564958             168119  0 +    584178 C
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=41499.000000
s hg38.chr15_KI270850v1_alt    310385 15 +    430880 TGTGAGGA----------TGTATGA
s panPan2.chr15              76665700 15 +  99763055 TGTGAGGA----------TGTGTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        17796 15 -   1709092 TGTGAGGA----------TGTATGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19272242 15 - 121039945 TGTGAGGA----------TGTATGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60861748 15 + 169600520 TGTGAGGA----------TGTATGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108387551 15 - 171882078 TGTGAGGA----------TGTATGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21078455 15 -  24206276 TGTGAGGA----------TGTATGA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        16023 15 -   1784207 TGTGAGGT----------TGTAAGG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114303906 15 - 132174527 TGTGAGGC----------TTTATGA
i calJac3.chr10             I 299 C 0
s otoGar3.GL873533             411753 25 -  31380117 TTTAAGGAAGGGCCCCACTGCCTGA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55236093 12 +  61074082 TGTAGGAA-------------AGGA
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958             168119  0 +    584178 C
e cebCap1.NW_016107979v1      1002487  0 +   1024465 C
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=2545313.000000
s hg38.chr15_KI270850v1_alt    310400 630 +    430880 CTCTAAACCACACGGCCTACAGTTCCTGCCTGCTTAATGTTTACTTTTCTACCTCTGCCCCTGGTTTTGGTCCCTGGAAGCTGCTGA-TTCATGGCAAAACCCCAGAGCTTGGAGTCAGAGGACTGAGTTTAAGTTCCAGTATTGCCTT--------TTTTGATCTTTCTTTTTT---TTTT--TTCTATCCATGATATCAATCCCTCT---CAGTCACTAAGTGATTGTGACAACACCTTGTACAGTTGTTGGTGGCATTACATCAGATGGT--ATATA-AGGGTATTTTGTCAAAACTGTAAAGGAG-------------------------------------GATGTGGCTGTAGGGGCTGATCATTCTCATGAGTGTTACTGCTCTTCTTTCCCACAGTTAAAAGCATATTGGCAGAGGAAGAGCCC-TGGCATTCCAGCAGGAGCTAACAGGAAAAAGAAAAT---CAATGGCAGTAGCCCTGACACAGCCACTTCTGGTGGTTACCACTCACCTGGGGATGTGAGTCTCGGCGGGCCAGGGTCCTGGCGACAGGGG-GCCCAAGGGGCAGTAGAGGGTAATTGTTAAGATTGTAGATG---GACTGTTGGGTACTGGTTAAGAATTCTGGATTTGAATCCTGCCTCTCCGTCTGCTAAGAAT--------TGATTAGGGattgattagcatatgat
s panPan2.chr15              76665715 592 +  99763055 CTCT-AACCACACAGCGTGTAGTTCCTGCCTATGTAATGTTTACTTTTCTTCCTCTGCATCTGGTTTTGGTCCctgggagttgctga-ttcatggcaaaaccccggagcttggagtcagaagactgaatttaagttccattattgccCA--------CCCGCACCCCCCCCTTTT---TTT------AACTCATAATATCCATCCCTGT---CGATCACTAAGTGACTGTGACAACaccttgtacagttgttggtggcattaaatcagatggt--gtata-agagtattttgcaaaaactgt-aaggAG-------------------------------------GGTGTGGCTGTAGGGGCTGGTAGTTCTCATGTGTATTACTGCTCTTCTTTCCCACAGCTAAAAGAATATCAGCAGAGGAACAGGCC-TGGTGTTCCAGCAGGAGCGAAGACAAAAAAGAAAAA---AACTGGCAGTAGCCCTGAGACAACCACTTCTGGTGGTTGCCACTCACCTGGGGATGTGAGTCTTGGCTGGCCAGGCTCCTGGGGACAGGGG-GCACAaggggtagtagagggtaattgttaagat--------------tgctgggtactggttaagaattctgggtttgaatcctgcttctctaacttc-------------------tagggatc----------tgat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        17811 629 -   1709092 CTCTAAGCCACACGGCCTACAGTTCCTGCCTGCTTAATGTTTACTTTTCTACCTCTGCCCTTGGTTTTGGTCCCTggcagctgctga-ttcatggcaaaaccccagagcttggagtcagaggactgagtttaagttccagtattgcctt--------ttctgatctttctttttt---ttt---ttctatccatgatatcaatccctct---cagtcactaagtgattgtgacaacaccttgtacagttgttggtggcattacatcagatggt--atata-agagtattttgtcaaaactgtaaaggag-------------------------------------gatgtggctgtaggggctgatcattCTCATGAGTGTTACTGCTCTTCTTTCCCACAGTTAAAAGCATATTGGCAGAGGAAGAGCCC-TGGCATTCCAGCAGGAGCTAACAGGAAAAAGAAAAT---CAATGGCAGTAGCCCTGACACAGCCACTTCTGGTGGTTACCACTCACCTGGGGATGTGAGTCTCGGCGGGCCAGGGTCCTGGGGACAGGGG-GCCCAAGGGGCAGTAGAGGGTAATTGTTAAGATTGTAGATG---GACTGTTGGGtactggttaagaattctggatttgaatcctgcctctccatctgctaaggat--------tgatttgggattgattagcatatgat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19272257 624 - 121039945 CTCTAAACCACACGGCCTACAGTTCCTGCCTGCTTAGTGTTTACTTTTCTACCTCTGCCCCTGGTTATGGTCCCTGGCAGCTGCTGA-TTCATGGCAAAACCTCAGAGC-TGGAGTCAGAGGACTGAGTTTAACTTCCAGTATTGCCTT--------TT----TCTTTCTTTTTT---TTT---TCCTACCCATGGTATCAATCTCTCT---CAGTCACTAAATGATTGTGACAACACCTTGTACAGTTGTTGGTGGCATTAAATCAGATGGT--GTATA-AGAGTATTTTGTCAAAACTGTAAAGGAG-------------------------------------GATGTGGCTGTAGGGGCTGATAGTTCTCATGAGTGTTACTGCTCTTTTTTCCCACAGTTAAAAGAATATTGGCAGAGAAAGAGCCC-TGGCACTCCAGCAGGAGCTAACAGGAAAAAGAAAAT---CAATGGCAGTAGCCCTGACACAGCCACATCTGGTGGTTACCACTCACCTGGGGATGTGAGTCTTGGCTGGCCAGGCTCCTGGAGACAGGGG-TCCCAaggggcagtagagggtaattgttaagattgtggatg---gactgttgggtactggttaagaatcctgggtttgaatcctgcctctccgtctgctaaggat--------tgattagggattgattaggatatgat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60861763 631 + 169600520 CTCCAAACCACACGGCATACAGTTCCTGCCTGCTTCATGTTTACTGTTCTAACTCCGCCCCTGGTTTTGGTCCCTGGCAGCTGCTGA-TTCATGGCAAAACCCCAGAGCTTGGAGTCAGAAGACGGAGCTTAAGTTCCAGTATTAACTA--------tt-tcttttgtttttttgtttttt---ttCTAGCCATGATATCAATCCCTCT---CAGTCACTGAAGGATTGTGACAACACCTTGTACAGTTGGTGGTGGCATTAAATCAGATGGT--GTAGA-AGAGTATTTGGTCAAAACTGTGAAGGAG-------------------------------------GGTGTGGCTGTAGGGGCTAATAGTTCTCATGAGTGTCACTGCTCCTCTTTCCCACAGTTGAAAGAATATTGGCAGAGGAAGAGCCC-TGGCGTTCCAGCAGGAGCTAACAGGAAAAAGAAAAT---CAATGGCAGTAGCCCTGACACCGCCGCTTCTGGTGGTTACCGCTCACCTGGGGATGTGAGTCTTGGCTGGCCAGGCTCCTGGGGACAGGGG-ACCCAAGGGGcagtagaggataattgttaagattgtggatg---gactgttgggtactagttaagaattctggctttgaatcctgcctctccatccgctaatgat--------tgattagggattaattaagatatgat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108387566 624 - 171882078 CTCCAAGCGACACGGCATACAGTTCCTGCCTCCTTCATGTTTACTGTTCTAACTCCGCCCCTGGTTTTGGTCCCTGGCAGCTGCTGA-TTCATGGCAAAACCCCAGAGCTTGGAGTCAGAAGACGGAGCTTAAGTTCCAGTATTAACTA-------------TTTTGTTTCTTTG---TTT---TTCTAGCGATAATATCAATCCCTCT---CAGTCACTTAAGGATTGTGACAACACCTTGTAGAGTTGGTGGTGGCATTAAATCAGATGGT--GTAGA-AGAGTATTTGGTCAAAACTGTGAAGGAG-------------------------------------GGTGTGGCTGTAGGGGCTGATAGTTCTCATGAGTGTCACTGCTCCTCTTTCCCACAGTTAAAAGAATATTGGCAGAGGAAGAGCCC-TGGCGTTCCAGCAGAAGCTAACAGGAAAAAGAAAAT---CAATGGCAGTAGCCCTGACACCGCGGCTTCTGGTGGTTACCGCTCACCTGGGGATGTGAGTCTTGGCTGGCCAGGCTCCTGGGGACAGGGG-ACCCAAGGGGCAGTAGAGGAGAATTGTTAAGATTGTGGATG---GACTGTTGGGTACTGGTTAAGAATTCTGGGTTTGAATCCTGCCTCTCCATCCGCTAATGAT--------TGATTAGGGATTAATTAAGATATGAT
i macFas5.chr7              C 0 M 1328
s chlSab2.chr29              21078470 618 -  24206276 CTCTAAACCGCACGGCATACGGTTCCTGCCTGCTTCATGTTTACCGTTCTAACTCCGCCCCTGGTTTTGGTCCCTGGAAGCTGCTGA-TTCATGGCAAAACCCCAGAGCTTGGAGTCAGAAGACTGAGCTTAAGTTCCAGtatta-------------------ttattattatt---ttt---TTCTATCCATGGTATCAATCCCTCT---CAGTCACTAAAGGATTGTGACAACACCTTGTACAGTTGGTGGCGGCATTAAATCAGATGGT--GTAGA-AGAGTATTTTGTCAAAACTGTAGAGGAG-------------------------------------GATGTGGCTGTAGGGGCTGATAGTTCTCATGAGTGTCACTGCTCTTCCTTCCCACAGTTAAAAGAATATTGGCAGAGGAAGAGCCC-TGGCGTTCCAGCAGGAGCTAACAGGAAAAAGAAAAT---CAATGGCAGTAGCCCTGACACCGCCGCTTCTGGTGGTTACCGCTCACCTGGGGATGTGAGTCTTGGCTGGCCAGGCTCCTGGGGACAGGGG-ACCCAAGGGGcagtagaggataattgttaagattgtggatg---gactgttgggtactggttaagaattctgggtttgaatcctgcctctccatctgctaatgat--------tgattagggattaattaggatatgat
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        16038 625 -   1784207 CTCTAAACCACACGGTATACAGTTCCTGCCTGCTTCGTGTTTACTTGTCTATCTCTGCCCCTGGTTTTGGTCCCTggcagctgctga-ttcacggcaaaaccccagagcttggagtcaaaagactgattttaagttctggcattgcct--------------ttttcttccttta-tattt---ttctagccatgatatcaatccccct---cagtcaataaatgattgtgaccacaccttgtacagttgttggtggcattaaatcagatggt--gtata-agagtattttgtcaaaactgtaaaggag-------------------------------------gatgtggctgtaggggctgatAGTTCTCATGAGTGTTACTGCTCTTCCTTCCCACAGTTAAAAGAATACTGGCAGAGGAAGAGCCC-TGGCGTTCCAGCAGGAGCTAACAGGAAAAAGAAAAT---CAATGGCAGTAGCCCTCACACAGCCACTACTGGTGGTTACCGCTCACCTGGGGATGTGAGTCTTGGCTGACCAGGCTCCTGGGGATGGGGG-GCCCAAGGGGCAGTAGAGGGAAATTGTTAAGATTgtggatg---gactgtcgggtactggttaagaattctgggtttgaatcctgcctctccgtctgctaatgat--------tgattagggattgattaagatatgat
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114303921 607 - 132174527 TGCTAAACCACACGGCATACAGTTCCTGCCTACTTCATGTTGATTTTTCTACCTCTGCCTGTGGTTTTGGTCTCTGGCAGTTGCTGA-TTCGTGGCAAAACCCTAGAGCTTGGAGTCAGAGGAATGAGTTTAAGTTTTAGTATTACTTT--------CTCTCTTTTTTTTCTTTT---TTT---TTTTTGTCATGACATCAATCCTGCT---CAGTCACTAAGTGAGTGTGACAACACAGTatagagttgttggtggcattaaatcagatggt--gtata-acagtattttgtaaaaactgtaaagtag-------------------------------------gttgtgactgtagggatttgtAGTTCTCATGGGCGTTACTGCTC-TTTTTCCCACAGTTAAAAGAATTTCAACAAAGAAACAGTCC-TGCTGCTCCATCTCGAGTGAGAAGAAGAAAGAAAAG---AAACAACAGTAGCCGTGAGACATCCGCTTCTGATGGTTGCCAGTCACCATGCCATGTGAGTCTTGGCTGGCCAGGCTTCTGGGGAAAAGGG-GCCCAAGGGGcagtagagggtaattgttaaggttgtggaag---aacttctgggtactggttaggaattctgggtttgaatcccacctctccatctgt-------------------gagggat----------atgat
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1002487 609 +   1024465 -TCTAAACCACACGGTGTACAGTTCCTGTCTACTTCATGTTGACTTTTCTACCTCTTCCTGTGGTTCTGGTCTCTGGCAGTTGCTGA-TTCGTGGCAAAATCCCAGAGCTTGGGGTCAGAGGAATGAGTTTAAGGTCTAGTATTGCttt--------ttcttttttttttttttc---tttttgtttttGCTATGATATCAGTCTCTCT---CGGTCACTTAGTGATTGTGACAAtaccttatagagttgtcggtggcattaaattagatggt--gtgta-atagtattttgtaaaaactgtaacgtag-------------------------------------gttgtgactataggggtttgtAGTTCTCATGGGTACTACTGCACTTTTTTCCCACAGTTAAAAGAATTTCAACAAAGAAACAGCCC-TGCTGTTCCAACACGAGTGAGAAGAAGGAAGAAAAG---AAACAACAATAGCCCTGAGACAGGCACTTCTGATGGTTGCCAGTCACCATGCCATGTGGGTCTTGGCCCGCCAGGCTTCTGGGGAAAAGGG-TCCC-AGGGGCAGcagaggggaattgttaagattgtggaag---aacaactgggtactggttaggaattctgggtttgaatcctgcctctccatctgc-------------------tagggat----------atgac
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             411778 606 -  31380117 CTCTGAGCCACACAATGCACAGCTCCTGCCTACTAGATGCTT---------------CCTTTGGTTTTGCCCCAC----ACTGCAGA-TTCATGGCTAAACCCCAGAGCTTAGAGTTGGAAGACTGAATTTAAATTGCATTATTGCCT------------------------TTT---TAA---AAAAAGCCATGTTAACAGTCTATTT---TAGTCACTAAGTGGTTGTTACAATCATTTG----GTTGTTGGTGGCATTAAATCAGACATT--GTACACAATATATTTTGTAAAAACTGTAAAGTAAAAAATAAAGCAAAAAAGACCCCTCCCACATGAAGTATGATGTAATCATATGGGCTTATAATTTTCATGAATCTTACTGCTTTTCCTTTCCACAGTTGCTAGAATTTCAGCGGAAGCACAATCTACCATCTTCTTATACAAAGAAGAAGAAGAAAGTAAA----AAATGATGGTAGCTCTGAGTCAACTACTTCTGATGATTGCCACTCACCTGAGGACGTGAGTCATGGTTTGCCAGGCCCTTGGGGATAGGGG-GCTT-AGGAGAAGTAAGGAGAACTGGTTAAGATTgtggaaa---aagtgttgggtactgggtaagagtactgagtttgaattctacctttcccactgc-------------------tagggat----------atgat
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55236105 619 +  61074082 CTCTAAAGT-CAGATTACTCAGATGTTATTTTTCCCAC-----CTTTTCCACCTCCACCTCTGGTTTTGCCTTTTGGCACCTGCTGATTTCATGGCATAACCCCAGAACTCAGAGTCAGAAGACTAAGTTTAAATTCCATTATTGCCTAAGTTTAAATTCCATTATTGCCTTTTC---TTT---TCTTAGTCATGTTATCAGTCTATTTCTGCAGTCACTGAGA----ATTACAACaccttgtagggctgttggtggcattaagtcagatggcgagtatg-ggagtatattgt--aaactacaaagttg-------------------------------------gacatgaatacaggggtttatagttCTCATGAGCCCCACTGATTTTCCTTTCTGTAGTTGAGGGAGTATCAGCAGAAGAACAGCCC-TGGTGT------AGGAGCAAAGAAGAAAAGGAAGATTAAAAATGGCAGTAGCCCTGAGACTACCACTTCCAATGATTGTCACTCTCCTGAGGATGTGAGTACTGGCTGGCCAGGTTCCTGGGGCCAGGGGTGTTTGAGGGGCAGTAGAGGGTGGTGGTTGATACTGTGGAGG---AGATGTCAGGTAC--------------GGATTTGAATCCTACCTCTCCCTCTGCTGGGAATATGCCCCATCAATAAAGTTGGGGTA----ATAAT
i canFam3.chr9              C 0 I 18
s dasNov3.JH564958             168119 541 +    584178 TTCTAAATCTCACGATGTATTGGTCTTTACCAGTTAACGTT-ACTTTTTTATGTATATCTCTTGTTTTG-CCCCTGACAGTGACTGA-TTTATAGCAGAATTCCAGAGCCTGGAGTTAGA------AGTTTAAATTCCATTATTGCCTT-----------------TTTTTTTTT---TTT---TTAAAGCCATGTTACATGTCATGGC---ATTTTTAAAAATGAGAATTATAACAC-TTGTAGGGTTGGTGGTGGCATTAAATCAGATGGC--GTATA------------------------------------------------------------------------------GGGGCTTAGACTTCTCATGAGTGTC----TTTTTCCTTTCTGCAGTTAAGAGAATTTCAGCAGAGGAACAGCCC-TGGTGTTCCTGCAGGAGCCAAAAAGAAAAGAAAGATCAAAAATAGCAGTAGCCCGGAGATACCAACTTCTGGTGG---CCACTCGCCTGAGGATGTGAGTCTTGGCTGGTCAGCCTCCCTGGGATCGGGATGCTGAAGGTGcagtagagggtactggtttagactgtggaagagaaagtatcaagtactggttaagaattctggctttg---------tcttcctctgc-------------------taggggt----------atgat
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=290104.000000
s hg38.chr15_KI270850v1_alt    311030  99 +    430880 ttagggcaagttgcttgaggtctttgggcctctcttttca-----catctg---tataataga-----------------------------------------------------------------------------ggtggtattttttgacttc--------------------------------------catttgt-gaagtttaaatg---agatTC
s panPan2.chr15              76666307  99 +  99763055 ttacggcaaactgtttgatctctttgggcctctcttttca-----catctg---taaaatagg-----------------------------------------------------------------------------gggagtattgtttgacttc--------------------------------------catttgt-gaagtttaaatg---agatTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        18440  99 -   1709092 ttagggcaaattgcttgaggtctttgggcctctcttttca-----catctg---tataataga-----------------------------------------------------------------------------ggtggtattttttgacttc--------------------------------------catttgt-gaagtttaaatg---agattc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19272881 102 - 121039945 ttagggcaagttgcttgaggtctttgggcctctcttttca-----tatctgtattataacaga-----------------------------------------------------------------------------ggtggtattttttgacttc--------------------------------------catttgt-gaagtttaaatg---agattc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60862394  99 + 169600520 ttagggcaagctgcttgaggtcttcaggtctctcttttca-----aatcta---tataataga-----------------------------------------------------------------------------ggtgagatttttaaacatc--------------------------------------tatttgt-gaagtttaaatg---agATTT
i rheMac8.chr7              C 0 C 0
s chlSab2.chr29              21079088  99 -  24206276 ttagggcaagttgcttgaggtcttcgggtctctcttttca-----catctg---tataataga-----------------------------------------------------------------------------ggtgggatttttttacatc--------------------------------------tatttgt-aaagtttaaatg---agatTT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        16663  98 -   1784207 ttagggcaagttgcttgaggtcttcaggcctcttttttca-----cgtctg---tataaaaga-----------------------------------------------------------------------------ggtggtatttttggacttc--------------------------------------catttgt-gaagttt-aatg---agattt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114304528  99 - 132174527 ttagggcaagttgcttgagctttttgggcctctcctttca-----catctg---tgaaataga-----------------------------------------------------------------------------ggtgatattgtctgacttc--------------------------------------catttgt-gagggtgaaatg---agatTC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1003096  99 +   1024465 ttagggcaagttgctggaggtttttgggcctctcctttca-----catctg---taaaataca-----------------------------------------------------------------------------ggtggtattgtctgacttc--------------------------------------catttgt-gagggtgaaatg---agatTC
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             412384  92 -  31380117 ttagggcaaattgtttg--------gggcttctcttttca-----cacgtg---taaaatagg-----------------------------------------------------------------------------ggtaatactgttttactta--------------------------------------tacttatagaagtttaaatg---aggttt
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55236742 219 +  61074082 CTGGAATGAGATGGTTGATTTTTTTTG---tttcttttaagggtttattta---tttgagagagagcagggggaggggcaaaggaagagggagagagaatcctcaagcagactccctgctgagcacggagcctgatgtctggctggatcccatgactctgagatcatgacctgagccggaagaactcaggagtcggacacttaa-ccaactaagctgtccagatgc
i canFam3.chr9              I 18 I 3
s dasNov3.JH564958             168660  96 +    584178 tttggagaaattgtttaagatctttaggcctctgtttaca-----tgtctg---taaaacagg-----------------------------------------------------------------------------gataatgtttt---attta--------------------------------------cacttgt-gaagtttaaagg---agtttc
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e macFas5.chr7              108388190 1328 - 171882078 M
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=779918.000000
s hg38.chr15_KI270850v1_alt    311129 178 +    430880 GTTA---TTGTTGCTT---TTATGT---GAATCCTTAGTACATGGCCTGCTGCA-AACACCCAGGACACCGAGGAAATGGTCGTTGCTGTT----------------TGATTTTCCTCATCCCCAGTCTCAA-GGGGAAGCCAGGCCAATGAGAAGAGCCACTTGCCATCAGGCTGTCCCTTTAGGAGTCACTG--------AAAGGGCCCCA
s panPan2.chr15              76666406 181 +  99763055 CTTATTGTTGTTGTTT---TCATGT---TAACCCCTAGTATGTGGCCTGCTGTA-AACACCCAGGATACCCAGGAAATGGTCATTGCTGTT----------------TGATTTTCCTGATCCCCATTCTCAA-GGGGAAGCTGGGCCAATGAGTACAGCCACTTGCCATCAGGCTGTCCCTTTAGGAGTCACTG--------aagggggccca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        18539 178 -   1709092 gtta---ttgttgctt---ttatgt---gaatccttagtacatggcctgctgca-aacacccaggacaccgaggaaatggtcgttgctgtt----------------TGATTTTCCTCATCCCCAGTCTCAA-GGGGAAGCCAGGCCAATGAGAAGAGCCACTTGCCATCAGGCTGTCCCTTTAGGAGTCACTG--------AAAGGGCCCCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19272983 178 - 121039945 gtta---ttgttgctt---ttatgt---gaatccttagtacatggcctgttgca-aacacccaggacacccaggaaatggtcgttgctgtt----------------TGATTTTCCTCATCCCCAGTCTCAA-GGGGAAGCCAGACCAATGAGAAGAGCCACTTGCCATCAGGCTGTCCCTTTAGGAGTCACTG--------AAAGGGCCCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60862493 178 + 169600520 GTTA---TTGTTGTTT---TTCTGA---GACTCCTTAGTACATGGCCTGCTGTA-AACACCCAGGACACCCACGAAATGGTCATTGCTGTT----------------TGATTTTTCTCATTCCCAGTCTCAA-GGGGAAGCCAGGCCAATAAGAAGAGTTACTTGCCATCAGGCTGTCCCTTTAGGAGTCACTG--------AAAGTGCCCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108389519 178 - 171882078 GTTA---TTGTTGTTT---TTCTTA---GACTCCTTAGTACATGGCCTGCTGTA-AACACCCAGGACACCCACGAAATGGTCATTGCTGTT----------------TGATTTTTCTCATTCCCAGTCTCAA-GAGGAAGCCAGGTCAATGAGAAGAGCCACTTGCCATCAGGCTGTCCCTTTAGGAGTCACTG--------AAAGGGCCCCA
i macFas5.chr7              M 1328 C 0
s chlSab2.chr29              21079187 178 -  24206276 GTTA---TTGTTGTTT---TTATGA---GAATCCTTAGTACATGGCCTGCTGTA-AATACCCAGGACACCCACGAAATGGTCGCTGCAGTT----------------TGATTTTTCTCATTCCCAGTCTCAA-GGGGAAGCCAGACCAATGAGAAGAGTCACTTGCCATCAGGCTGTCCCTTTAGGAGTCACTG--------AAAGGGCCCCA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        16761 178 -   1784207 gtta---ttgttgctt---ttatga---gaatccttagtacatggcctgctgta-aacacacaggacacccacaaaatggtCATTGCTGCT----------------TGATTTTCCTCATTCCCAGTCTCAA-GGGGAAGCCAGGCCAATGAGAAGAGTCACCTGCCATCAGGCTGCCCCTTTAGGAGTCACTG--------AAAGGGCCCCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114304627 179 - 132174527 GTTA---TTGCTGTTG---TTTTGT---TAATCCCTAGTACATGGCCTGCTGTA-AACACCCAGGACACCCAGGAAATGGTCCTTGCTGTT----------------TTGTTTTCCTCACCCCCAGTCTCAAGGGGGAAGCCAGCCCAATGAGAACAGCCATTTGCTGTCAGGCTGTCCCTTTAAGAGTCACTG--------AAAGGGCCCCA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1003195 181 +   1024465 GTTA---TTGCTGTTGTTTTTTTGT---TAATCCCTAGTACATGGTCTGCTGTA-AACACCCAGGACACCCAGGAAAGGGTCCTTGCTGTT----------------TGGTTTTCCTCAACCCCAGTCTCAA-GGGGAAGCCAGCCCAAGGAGAACAGCCTTTTGCTGTCAGGCTGTCCCTTTAAGAGTCACTG--------AAAGGGCCCCA
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             412476 180 -  31380117 ttgg---ttgctgttt---ttatat---taattctcagtaca-ggcatggtatagaata-----aacattccataaatggtagtcgctatt----------------TGATTTTTCTCATCTCCAGCCTCA--GGGGAAGTAAGGCCAGTGAGAATGGCCGCTTGCCATTAGGCTTTCCCTTTAAgaagcagggtatggtgcagagaaccctg
i otoGar3.GL873533          C 0 I 7428
s canFam3.chr9               55236964 185 +  61074082 ATTG---ATGTTGTTT---TTATAT---TAATCCCT----TAGGGCCTGGTGTGGGATA-----AGCATTCAGTCAAGGGTAGTC-CTATTTGACATACTGACCTGGTGACTTTCCTCATCCCTGGCTTCAGGGGGGAAGCCAGG-CAGTGAGAATAGCCATCTGCCATCACACTGTCCCTATAGGAAGCACCA--------AAAGAGACCCA
i canFam3.chr9              I 3 C 0
s dasNov3.JH564958             168756 181 +    584178 -----------tgtat---ttatatataaagtccttagtagagggtctgggacagagta-----aacattcagtaaatggtagttcctattTTAGCTATTGCCTAGGTGATTTTGCTCATTCCCAGCCTCAA-GGAGAAGCCAAGC---TGCTAACTGGCACTTGCCATCATTTTCTCCCTTTAGGAAGTCTCA--------AAAGAGCCca-
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=18604.000000
s hg38.chr15_KI270850v1_alt    311307 4 +    430880 GGGT
s panPan2.chr15              76666587 4 +  99763055 gggt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        18717 4 -   1709092 GGGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19273161 4 - 121039945 CAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60862671 4 + 169600520 GGGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108389697 4 - 171882078 GGGT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21079365 4 -  24206276 GGGT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        16939 4 -   1784207 GGGT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114304806 4 - 132174527 GAAG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1003376 4 +   1024465 GGGT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             420084 4 -  31380117 GGGA
i otoGar3.GL873533          I 7428 C 0
s canFam3.chr9               55237149 4 +  61074082 GGGT
i canFam3.chr9              C 0 I 4609
s dasNov3.JH564958             168937 4 +    584178 gggt
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=7800.000000
s hg38.chr15_KI270850v1_alt    311311 1 +    430880 G
s panPan2.chr15              76666591 1 +  99763055 g
i panPan2.chr15             C 0 I 1257
s gorGor5.CYUI01015556v1        18721 1 -   1709092 G
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19273165 1 - 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60862675 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108389701 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21079369 1 -  24206276 G
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        16943 1 -   1784207 G
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114304810 1 - 132174527 G
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1003380 1 +   1024465 G
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             420088 1 -  31380117 G
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55241762 1 +  61074082 G
i canFam3.chr9              I 4609 I 4
s dasNov3.JH564958             168941 1 +    584178 g
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=22858.000000
s hg38.chr15_KI270850v1_alt    311312 4 +    430880 GGAT
s gorGor5.CYUI01015556v1        18722 4 -   1709092 GGAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19273166 4 - 121039945 GGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60862676 4 + 169600520 GGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108389702 4 - 171882078 GGAT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21079370 4 -  24206276 GGAT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        16944 4 -   1784207 GGAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114304811 4 - 132174527 GGAT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1003381 4 +   1024465 GGAT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             420089 4 -  31380117 GGAT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55241767 4 +  61074082 GGAT
i canFam3.chr9              I 4 C 0
s dasNov3.JH564958             168942 4 +    584178 tgat
i dasNov3.JH564958          C 0 I 3819
e panPan2.chr15              76666592 1257 +  99763055 I
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=718361.000000
s hg38.chr15_KI270850v1_alt    311316 212 +    430880 GGT---GGGGAGATAAGAACCACGAGAGAAGTTGGCACAAAGGAGTTATGGGAAAAAGGGTCCAAGATAGGCAGAAAAGAAGCTTT-------TGCCAGTTGATGGGGGAAGAAA-GAAGTCAGAGGGCTTAGACAGTGAGGGGGGAC--AGA--ACATCTCCATGT--GCACTCTC---ATCTCTTGCAGTCAGCAACAGGTATCTACGGAGAAGGCCGTGCATCCTCTAC
s gorGor5.CYUI01015556v1        18726 213 -   1709092 GGT---GGGGAGATAAGAACCACGAGAGAAGTTGGCACAAAGGAGTTATGGGAAAAAGGGTCCAAGATAGGCAGAAAAGAAGCTTT-------TGCCAGTTGATGGGGGAAGAAAGGAAGTCAGAGGGCTTAGACAGTGAGGGGGGAC--AGA--ACATCTCCATGT--GCACTCTC---ATCTCCTGCAGTCAGCAACAGGTATCTACGGGGAGGGCCGTGCATCCTCTGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19273170 212 - 121039945 GGT---GGGGAGATAAGAACCATGAGAGAAGTTGGCACAAAGGAGTTATGGGACAAAGGGTCCAAGATAGGCAGAAAAGAAGCTTT-------TGCCAGTTGAT-AGGGAAGAAAGGAAGTCAGAGGGCTTAGACAGTGAGGGGGGAC--AGA--ACATCTCCATGT--GCACTCTC---ATCTCTTGCAGTCAGCAACAGGTATCTATGGAGAGGGCCCTGTGTCATCTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60862680 211 + 169600520 GGT---GGGGAGATAAAAACCATGAGAGAAGTTGGCACAAAGGAGTTATGGGACAACTGGTCCAAGATAGGCAGAAAAGAAATGTT-------TGTCAGTTGAT-GGGGAAGAAAGGAAGTCAGAGGGCTTAGACACTGAGG-GGGAC--AGA--ACATCTCCATGT--GCACTCTC---ATCTCTTGTAGTCAGCAACAGGTGTCTACGGGGAGGGCCCTGTGTCATCTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108389706 211 - 171882078 GGT---GGGGTGATAAAAACCACGAGAGAAGTTGGCACAAAGGAGTTATGGGACAACTGGTCCAAGATAGGCAGAAAAGAAATGTT-------TGTCAGTTGAT-GGGGAAGAAAGGAAGTCAGAGGGCTTAGACACTGAGG-GGGAC--AGA--ACATCTCCATGT--GCACTCTC---ATCTCTTGTAGTCAGCAACAGGTGTCTACGGGGAGGGCCCTGTGTCATCTAC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21079374 211 -  24206276 CAT---GGGGTGATAAAAACCATGAGAGAAGTTGCCACAAACGAGTTATGGGACAACTGGTCCAAGATAGGTAGAAAAGAAATGTT-------TGCCAGTTGAT-GGGGAAGAAAGGAAGTGAGAGGGCTTAGACACTGAGG-GGGAC--AGA--ACATCTCCATGT--GCCCTCTC---ATCTCTTGTAGTCAGCAACAGGTGTCTACGGGGAGGGCCCCGTGTCATCTAC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        16948 212 -   1784207 GGT---GGGGAGATAAGAACCATGAGAGAAGTTGGCACAAAGGAGTCGTGGGACAAAGGGTCCAAGATAGGCAGAAAAGAAACTCT-------TGCCAGTTGAT-GGGGAAGAAAAGAAGTCAGAGGGCTTAGACCTTGAGGAGGGAC--AGA--ACATCTCCATGT--GCACTCTC---ATCTCTTGTAGTCAGCAACAGGGATCCACAGGGAGGCCCCTGCATCATCTGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114304815 208 - 132174527 GGT----GGGAGATCAGAACCATGAGAGGAGCTGGCACAAAGGAGTTATGGGACAAAGGGTCTGAGGGAGGCAGAACAGAAAATGC-------TGCCAGCTGAT--GGGAAGAAAGGAAGTCAGA-GGCTTGGACACTGAGG-GGGAC--AGA--ACATCTCCATGT--GCACTCTC---ATCTCTTGTAGTCAGCAGCAGGTGGTCACAAGGAGGGCCCTGCACCATGTGC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1003385 206 +   1024465 GGT----GGGAGATAAGCACCGTGAGAGGAGCTGGCACAGATGAGTTCTGGGACAACTGGTTC--GGGAGGCAGAACAGGAAGTGC-------TGCCAGCTGAT-GGGGAGGAAAGGAAGTCAGA-GGCTTGGACACTGA-G-GGGAC--AGA--ACATCTCCATGT--GCACTCTC---ATCTCTTGTAGTCAGCAGCAGGTGGTCCCAAGGAGGGCCCTGCGCCATGTGC
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             420093 214 -  31380117 GAT---GGAGAGATAAGAATGCTGAGA--AGTTGGTAGGAAGGGATTATGAGAGGAGGGGTCCAAGTTAGCCAGAAAAAAAAATTGATAGGGAAGAAAGTTGAT-GGGGAAGAAAGGAAGTCACAGGGCTTAG---CTGTGAGGAGAC--AGA--GCATCACTGAGT--AGACCCTC---ATCTCTTTTAGTCTACGTCCTATGTCAATGGAACAAGCCTTTCATCGTCCAT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55241771 195 +  61074082 GATGACGGGGGGCTAAGAACCAGGAGGAG---TGGCACAAAGGAG------------GGGTT--AGTTAGGCAGAAAAG------T-------TTGCAGCTGAT-GGGCAGGATGAGGAGTCAGAGGGCTTAGGTACTGGGG-CGGGC--AGAGTGCGCCTCCATGTGAGCCCTTTC---GTGTCTCCTAGTCTTCATCCTACATCAATGGGGAGGGCCTGGCATCTTCTGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             172765 210 +    584178 GAT---AGGACGATAAGAACCACGGAA--AGGTGGCATAAGGGA-TTGTAAGAAGATAGGCCCAAATTTGGCATAAAATAAACTCT-------TGCCAGTTGGT-GGGGAAAAAAGGAAGTCAAACAGCTCAGGTGCTTTTG-GGGACAAAGA--GCATCTCCATGT--GAGATCTTTCAATCTCTTCTAGTCTTCATCCTACTTCAATGGTGAGGGCC---TAACATCTGT
i dasNov3.JH564958          I 3819 C 0
e panPan2.chr15              76666592 1257 +  99763055 I
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=1014458.000000
s hg38.chr15_KI270850v1_alt    311528 207 +    430880 TACCCTGGAGGATCTGGAGGTAAGAGGCCCTGGGCCGAGGTGCAGTGACCC-TGCAGGCCAGCCCTCCAACCTCCTCCCACAGCAGGGGCTTGTTGCCCCTCTGCCAGCTGA--------GGCAGCCCACACACCCC---CACCAGCCCTAATGATTATTCTCTCTACCCCTCCCCACAATCTTCCTCCAACTCCTTCT----------CTCTGCATGCACCTCAGAGC
s panPan2.chr15              76667849 213 +  99763055 TACCCTGAAGGATCTGGAAGTAAGATGCCCTGGGCTGAGGTGCAGTGATTC-TGCAGGCCAGCCCTCCAACCTCCTTTCACAGCAGGGGCTGGGTGCCCCTCTGCCAGCTGACACAGCCCGACAGCCCACACACACC-----CCAGCCCTAATGATTGTTCTCTTTACCTCTCCCCACAATCCTCCTCCAACTCCTCCT----------CTCTGCATGCGCCTCAGAGT
i panPan2.chr15             I 1257 C 0
s gorGor5.CYUI01015556v1        18939 198 -   1709092 TACCCTGGAGGATCTCG---------GCCCAGGGCCGAGGTGCAGTGACCC-TGCAGGCCAGCCCTCCAACCTCCTCCCGCAGCAGGGGCTTGTTGCCCCTCTGCCAGCTGA--------GGCAGCCCACACACCCC---CACCAGCCCTAATGATTATTCTCTCTACCCCTCCCCACAATCTTCCTCCAACTCCTTCT----------CTCTGCATGCACCTCAGAGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19273382 207 - 121039945 TACCCTGAAGGATCTGGAGGTAAGAGGCCCTGGGCCGAGGTGCAGTGACCC-TGCAGGCCAGCCCTCCAACCTCCTCCCACAGCAGGGGCTTGTTGCCCCTCTGCCAGCTGA--------GACAGCCCACACCCCGC---CCCCAGCCCTAATGATTGTACCGTCTACCCCTCCCCACAATCTTCCTCCAACTCCTCCT----------CTCTGCATGCACCTCAGAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60862891 207 + 169600520 TACCCTGAAAGATCTGCAGGTAAGAGGCCCTGGGCCGAGATTCAGTGACCC-TGCAGGCCAGCCCTCCAACCTCCTCCCACAGCAGGGGCTGGTTGCCCCTCTGCCAGCTGA--------GACAGCCCAGACACACCCCTCCCCAGCTCTAATGATTGTTCTCTCTACCCCTCCCCGCAA---TCCTCCAACTCCTCCT----------CCCTTCATGCACCTCAGAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108389917 207 - 171882078 TAACCTGAAAGATCTGCAGGTAAGAGGCCCTGGGCCGAGGTTCAGTGACCC-TGCAGGCCAGCCCTCCAACCTCCTCCCACAGCAGGGGCTGGTTGCCCCTCTCCCAGCTGA--------GACAGCCCAGACACACCCCTCCCCAGCTCTAATGATTGTTCTCTCTACCCCTCCCCGCAA---TCCTCCAACTCCTCCT----------CTCTGCATGCACCTCAGAGC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21079585 209 -  24206276 TACCCTGAAAGACCTAGAGGTAAGA-TCCCTGGGCCGAGGTTCAGTGACCC-TGCAGGCTAGCCCTCCAACGTCCTCCCACAGCAGGGGCTGGTTGCCCCTCTGCCAGCTGA--------GACAGCCCAGACACACCCCTCCCCAGCCCCAATGACTGTTCTCTCTACCGCTCCCCACAATCCTCCTCCAACTCCTCCT----------CTCTGCATGCACCTCAGAGC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        17160 210 -   1784207 TACCCTGAAGGATCTGGAGGTAAGAGGCCCTGGGCCGAGGTTCAGTGACCC-TGCGGGCCAGCCCTCCAACCTCCTCCCACAGCAGGGGCTGGTTGCCCGTCTGCCAGCTGA--------GACAGCCCACACACACCCCTCCCCAGCCGTAATGATTGTTCTCTCTACCCCTCCCCACAATCCTCGTCCAACTCCTCCT----------CTCTGCATGCACCTCATAGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114305023 200 - 132174527 CACCATGAAAGATCCAGAGGTAAGAGGCCCTGAGCTGAGGTACAGTGACCC-TGCAGGCCAGCCCTCCACCCTTCTCCCACAGTGGCAGCTGGGTGCCCCTCTGCCAGCTGA--------GACAG-CCCCACACACC-----CCAACCATAATGATTGTTCTCTCTACCTCTCCCT-CAATCCTCCTC---CAACTCCT----------CTCCGCATGCGCGTTAGAGC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1003591 203 +   1024465 CACCATGAAAGATCCAGAGGTAAGAGGCCCTGAGCTGAGGTACGGTGACCC-TGCAGGCCAGCCCTCCACCCTCCTCCCACAGTGGCAGCTGGGTGCCCCTCTGCCAGCCGA--------GACAACCCCCACACACC-----CCAACCCTAATGATTGTTCTCTCTACCTCTCCCC-CGATCCTCCCC-AACTCCTCCT----------CTCTGCAGGTGCCTCAGAGC
i cebCap1.NW_016107979v1    C 0 I 73
s otoGar3.GL873533             420307 198 -  31380117 TAACCTGAAGGATTTGGAGGTAAATGGCCCTGAACTATGGCCCAGTGACCC-TGCAGGCCAGCCCCCTGACTTCC---CACAGTAGGGGCTGAGTTCCCCTCTGGCAGTTGA--------GATAGCCCTTAGATCCT------TAACCCTAATGATTGCTCTCTCTACCTCTCCCCCCACCCCTCCTCCAA---CTGCT----------CTCTGCATGCGCCTCAGAGC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55241966 202 +  61074082 TAACATAAAGGATCTAGAGGTAAGTGGCACTAGACCATGGTCTCAGGACCC-TGCAGGCCAGCCCCC--ATCTCCTCCCACAGCGGGGGCTGGGTGCCCCGCTGCCAGCCCA--------GACAGCCC--------------CCAACCCTAATGACTGCTCTCTCTACCTCTCCC--CAACCCTCGTCCAActcctcctcctcctcctcctcTGCATGCGCCTCAGAGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             172975 211 +    584178 TAACATGAAGCATCTGGAGGTAAGTGGCCCTGGACTGTGGCCTGGTGACCCTTGCAGGCCAGTCCCCCCACCTCCTCCCACAGTGGGGGCTGGGTGCCCCACTGCCAGTTGA--------GACAGCCCAGACACACC--CCCCCAACCTTAACGATTGCTCTCTCTACCTCTCCCC-CAACTCTCTTCCCACTCCTCCTCCT-------CTCTGCATGCGCCTCAGAGC
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=252089.000000
s hg38.chr15_KI270850v1_alt    311735 76 +    430880 CAGTACCAAGAACTAGCAGTGGCCCTGGATTC-AAGCTCCGCAATAATCAGTCAACTCACTGAAAACATCAATTCAC
s panPan2.chr15              76668062 76 +  99763055 CGGTACCAAGAACTGGAAGTAGCCCTGGACTC-AAGCTCCATGACAGTCAATCAACTAAATGAAAACATAGAATCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        19137 76 -   1709092 CAGTACCAAGAACTAGCAGTGGCCCCGGATTC-AAGCTCCGCAATAATCAGTCAACTCAGTGAAAACGTCAATTCAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19273589 76 - 121039945 CAGTATCAAGAACTACCAGTAGCCCTGGAATC-AAGCTCCGCAATAATCGGTCAACTTGGTGAAAACAGCAACTCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60863098 77 + 169600520 CAGTACCAAGAACTAGCAGGAGCCCCGGACTCAAAGCTCCGCAATAATCAGTCAACCCAGTGAAAACATCCATTCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108390124 77 - 171882078 CAGTACCAAGAACTAGCAGGAGCCCCGGACTCAAAGCTCCGCAATAATCAGTCAACCCAGTGAAAACATCCATTCAC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21079794 77 -  24206276 CAGTACCAAGAACTAGCAGGAGCCCCGGACTCAAAGCTCCACAATAATCAGTCAACCCAGTGAAAACATCAATTCAC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        17370 76 -   1784207 CGGTGCCAAGAACTAGCAGTAGCCCCAGACTC-AAGCTCTGCAATAATCAGTCAACTCAGTGAAAACATCCATTCAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114305223 73 - 132174527 ACACACCAAG---TACAAATAGCCCTGGACTC-GAGCTCAGTCACAACTAGTGAACTGAATAACACCATCAACTTAT
i calJac3.chr10             C 0 C 0
s otoGar3.GL873533             420505 76 -  31380117 CGGTACCACGAGCTAGCAGTAGCCCTGGACTC-CAGCTATCTAACAAACAAACAACTCAGTAGCAAAGTAGAGGAAT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55242168 76 +  61074082 CGGTACCAAGAGCTATCACTAGCCCTGGACTC-CAGCAATCTAACAAACAAACAACTCAGTAGCAAGATAGAGGAAT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             173186 76 +    584178 CGATACCAAGAGCTATCAGTAGCCCTGGATTC-CAGCAATCTAACAAACAATCAACTCATTAACAAGATAGAGGAAT
i dasNov3.JH564958          C 0 C 0
e cebCap1.NW_016107979v1      1003794 73 +   1024465 I
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=345901.000000
s hg38.chr15_KI270850v1_alt    311811 68 +    430880 TGGTAAGAGTCCAGT-GGGGTCCCCTGATTACA-GCTGGTCAATCCTGGACTCCAGTTTCCTCTTGGGGC
s panPan2.chr15              76668138 67 +  99763055 TGGTAAGAGTCCAGT-GGGGTCCTGTGATTCCATGCT-GCCAATCCTGGGCTTTAG-TTCCCCTTGGGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        19213 68 -   1709092 TGGTAAGAGTCCAGT-GGGGTCCCCTGATTACA-GCTGGTCAATCCTGGACTCCAGTTTCCTCTTGGGGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19273665 68 - 121039945 TGGTCAGAGTCCAGT-GGGGTCCCCTGATTCCA-GCCTGTCAATCCTGGACTCCAGTTTCCGCTTGGGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60863175 66 + 169600520 TGGGAAGAGTCCAGT-GGCGTCCTCTGATTCCACGCT-GCCAAACCTGGACTC--GTTTCCCCTTGAGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108390201 66 - 171882078 TGGGAAGAGTCCAGT-GGCGTCCTCTGATTCCACGCT-GCCAAACCTGGACTC--GTTTCCCCTTGAGGC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21079871 66 -  24206276 TGGGAAGAGTCCAGT-GGCATCCTCTGATTCCACGCT-GCCAGTCCTGTATTC--ATTTCCCCTTGGGGC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        17446 66 -   1784207 TGGGAACAGTCCAGT-GGGGTCCTCTGATTCCACGCT-GCCAATCCTGGACTC--GTTTCCCCTTGGGGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114305296 68 - 132174527 TGGTAAGAGTCCAGT-GGGGTCCCCTGATTCCACGCT-GCCAATCCTGGGCTCCAGTTTCCCCTTGGGGC
i calJac3.chr10             C 0 I 247
s cebCap1.NW_016107979v1      1003867 68 +   1024465 TGGTAAGAGTCCAGT-GGGGTCCCCTGATTCCACGCT-GCCAATCCTGGGTTCCAGTTTCCCCTTGGGGC
i cebCap1.NW_016107979v1    I 73 I 1322
s otoGar3.GL873533             420581 69 -  31380117 TGGTAAGAGTCCAGTGGGGGTCCCCTAATGCCATGTC-GCCCATCCTGGGCTGCACTTTTCCCTTGGGGC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55242244 68 +  61074082 TGGTAAGAGTCCAGT-GGGGTCCCCTGATTCCACACT-GCCAATCTGGGGCTCCAGTTTTTCCCTGGGGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             173262 68 +    584178 TGGTAAGAGTCCAGT-GGGGTCCCCTGAGTCCATGCT-GCCAATCCTGGGCTCCAATTTCCCCTTGGGGC
i dasNov3.JH564958          C 0 C 0
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=872191.000000
s hg38.chr15_KI270850v1_alt    311879 282 +    430880 CCTGAAGAAAGGGGCTAGGGGCCCCTGATGCCAAGGGCAAATGGGGAGCTGG----GCACCCAGGTCTCACCT----GGAGGGACCCCAGAGCACAGAACATGCAGCATGGCTCTTCTG--CACTGCCCTCTTTGCTGACTCTCTCTTCTCCAGACACCCCTGCTCTAGTCCTTGCCACA----CATGCCCTGGGGTTGTC-ACCTCTCTG-GGAAGCACTAGCCTgactggttgtcagggg-tccatatttctgccctgcctcagtccctaatttgc----tttttg-----agtctggacaagcca
s panPan2.chr15              76668205 283 +  99763055 CCTGAAGAAAGGAGCTGGGGGCCCCTGGTGTCAAGGACAAATGGGGAGCTGG---AGCACCCAGGCCTCACCT----GGAGGGATCCCAGAGCAAGGAGCATGCAGCATGGCTCTTCTG-TCACTGCCCTCTTTGCCAACTCTCTCTTCTCCAGACACCCCTGCTCCAGTCCTTGCCACA----CACGCCCTGGGGTTGTC-AAATCTCAG-GGAAGCGCTAGCCTgactggttgtcaggggccccatatttatgccctgactcagtccctaatttgc------tttg-----agtctggaaaagcca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        19281 280 -   1709092 CCTGAAGAAAGGGGCTAGGGGCCCCTGATGCCAAGGGCGAATGGGGAGCTGG----GCACCCAGGTCTCACCT----GGAGGGACCCCAGAGCACAGAACATGCAGCATGGCTCTTCTG--CACTGCCCTCTTTGCTGACTCTCTCTTCTCCAGACACCCCTGCTCTAGTCCTTGCCACA----CATGCCCTGGGGTTGTC-ACCTCTCCG-GGAAGCACTAGCCTgactggttgtcaggg--tccatatttctgccctg-ctcagtccctaatttgc----tttttg-----agtctggacaagcca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               19273733 283 - 121039945 CCTGAAGAAAGGGGCTAGGGGCCCCTGATGCCAAGGGCAAATGGGGAGCTGG---GGCACCCAGGTCTCACCT----GGAGGGACCCCAGAGCACAGAACATGCAGCATGGCTCTTCCG--CACTGCCCTCTTTGCTGACTGTCTCTTCTCCAGACACCCCTGCTCTAGTCCTTGCCACA----CATGCCCTGGGGTTGTC-GCCTCTCAG-GGAAGCACTAGCCTGACTGGTTGTCAGGGG-CCCGAATTTCTGCCCTGCCTCAGTCCCTAATTTGC----TTTTTG-----AGTCTGGACCAGCCA
i nomLeu3.chr6              C 0 N 0
s rheMac8.chr7               60863241 283 + 169600520 CCTGAAGAAAGGGTCTAGGGGCCCCTGGTGCCAAGGGTAAATGGGGAGCTGG---GGCACCCAGGCCTCACCT----GGATGGACCCCAGAGCACAGACCGTGCAGCATGGCTCTTCTG--CACTGCCCTCTTTGCTGGCTCTCTCTTCTCCAGACACCCCTGCTCGACTCCTTGCCACA----CATGCCCTGGGGTTGTT-GCCTCTCAG-GGAAGCACTAGCCTGGCTGTTTgtcagggg-cctgtatttctgccctgactcagtccctaatttgc----tttttg-----agtctggacaagcct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108390267 283 - 171882078 CCTGAAGAAAGGGTCTAGGGGCCCCTGGTGCCAAGGGTAAATGGGGAGCTGG---GGCACCCAGGCCTCACCT----GGATGGACCCCAGAGCACAGACCGTGCAGCATGGCTCTTCTG--CACTGCCCTCTTTGCTGACTCTCTCTTCTCCAGACACCCCTGCTCGACTCCTTGCCACA----CATGCCCTGGGGTTGTT-GCCTCTCAG-GGAAGCACTAGCCTGGCTGTTTgtcagggg-cctgtatttctgccctgactcagtccctaatttgc----tttttg-----agtctggacaagcct
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21079937 276 -  24206276 CCTGAGTAAAGGGGCTAGGGGCCCCTGGTGCCATGGGAAAATGGGGAGCTGG---GGCACGCAGGCCTCACCT----GGATGGACCCCAGAACACAGACCGTGCAGCATGGCTCTTCTG--CACTGCTCTCTCTG----CTCTCTCTTCTCCAGACACTCC-ACTCGAGTTCTTGCCACA----CACTCTCTGCGGTTGTT-GCCTCTCAG-GAAAGCACTAGCCTGACTGTTTGTC--GGA-CCCGTATTTCTATCCTGACTCAGTCCCTAATTTGC----TTTTTG-----AGTCTGGACAAGCCA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        17512 285 -   1784207 CCTGAAGAAAGGGCTAA--AGCCCCTGGTGCCAAGGGCAAATGGGGAGCTGG---GGTGCCCAGGCCTCACCTGGAGGGAGGGACTCCAGAGCACAGAACGTGCAGCCTGGTTCTTCAG--TACCACCCTCTTTGCTGACTGTCTCTTCTCCAGACACCCCTGCTCGAGTCCTTGTCACA----CATGCCCTGCAGTTGTC-ACCTCTCAG-GGAACCACTAGCCTgactggttgtcaggaa-cccatatttctgccctgactcagtccctgatttgc----tttttg-----agtctggacaagcca
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             420650 250 -  31380117 TGTGAAGAAAGAAGCTGGGGTCCCCTGGTGTCAAGGGAGAATGGGT-GCTGGGTGGGTGGCTAGGCTTCAGCT----GGAGGCGACCCTGAGTACAGAGCATGCCGCATGG-----------------CTCTTTGCCTACTCTCTCTTCTCCAGATGCCCCTGCTTGGGTCCTTACAACA----CTAGCCCCGGGGTTGTTAACCTCTTGG-GGAAAAACTAGCTTAAC---TTGTAAGAGGCCCTATGTTTTT-------CTCTGTC----------------TTtg-----attttagataagtca
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55242312 267 +  61074082 TCTGAAGAAAGGGGCTGGGGGACCCTGGTGCTAAGGGAGAATGGGGTGTCGG---GGGGTTTGAGTCTCAGGT----GGAGGGACCCCAGAGCA-------TGCGGCATGGCTCTCTGT--GGCTGCCTTCTTTGCCTCCT-TCTGTTCTCCGGACACCCCTGCTTGAGTCCTTTCCATA----CTTGCCCCAGGGCTGTA-GCCTCTGga-ggaagcactggcttggctggt-------------gtgctcctgccctgacccaacccctaatttgctccatctttg-----aacttggatgagtca
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             173330 288 +    584178 TCTGAAGAAAGGGGCTGGGGGTCCCTGGTACCAAGGGAGAGTGGAGTGCCGG----GGGCCTACGTCTCAGCT----GGAGGGACCCCAGAGCACTGAGCACGCAGCCTGGTGCTTTCTCTTGCTGCTCTCCTGACCCACTGTCTTTTCCAGTGGCA---CTGCTC----TCCTGACCCACTGTCTTGCCCTGGCGCTGTG-GCCTCTCAATAGAAGCCCTAGCCTGCctggttgtcaggagccctgtgtctcagccctgacttagtgcctaatttgt----tgcttggtttcactttggacaagtca
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1003935 1322 +   1024465 I
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=601662.000000
s hg38.chr15_KI270850v1_alt    312161 265 +    430880 tctctcctctttatgctcgtgtttctggaggaggtaga-----gagtatcaaaggtcttggttagctctgaAAGTCAGAGATTTAAAGGccc-ctagaatggaaacctcaggg--ccaagggctcctgtctgtcctttgctgttttatatctctgctatgaagaactgtacctggcctgtac---------------atgctcagtaaatgtttgttgaatgaatgCACG-TTTCTAAATC----ACAAACTGGCAGAAGGGGGGTGG----GCC----CTTCTCAAACTCTGTCTCTAGA
s panPan2.chr15              76668488 258 +  99763055 cctgtcctccttgggctcctgtttctggaggaggt--g-----gagcatcaaaggtctctgtcagctctgaaagtccaagattAAAAGGccc-ctagaatggaaacctcaggg--ccaagggctcctgtctatcctattccatcctata--cctgctgtgaagaaccatacctgtcctgtat---------------gtgctcagtaactgtttgtggaatgaaGGCACC-TTTCTAAATC----ACAAGCAGGCAGAA---GGGTGG----GCC----TTTCTGAGTCTCCGTCTCTAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        19561 265 -   1709092 tctctcctctttatgctcgtgtttctggaggaggtaga-----gagtatcaaaggtctcagttagctctgaaagtcagagattTAAAGGccc-ctagaatggaaacctcaggg--ccaagggctcctgtctgtcctttgctgttttatatctctgctatgaagaactgtacctggcctgtac---------------atgctcagtaaatgtttgttgaatgaatgCACG-TTTCTAAATC----ACAAACTGGCAGAAGGGGGGTGG----GCC----TTTCTCAAACTCTGTCTCTAGA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60863524 264 + 169600520 tctctcctccttgggctcgtgtttcTGGACGAGGTAGA-----GAGTGTCAAAGGTCTCTGTTCGCTCTGGGAGTCCGAGATTTAAAGGccc-ctagaatggaaacctcaggg--ccaagggctcctgtctgtccttttctgtgttctgtctccgctgtgaagaaccacacctggcctgtag---------------gtgctcagcacatgtttgttgaatgaacgCACCTTTTCTAAATC----ACAAGCTGGCAGGA--CGGGGGG----GCC----TTTCTCAAACTCTGTCTCTAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108390550 263 - 171882078 tctctcctccttgggctcgtgtttctggacgaggtaga-----gagtgtcaaaggtctctgttcgctctgggagtccgagattTAAAGGccc-ctagaatggaaacctcaggg--ccaagggctcctgtctgtccttttctgtcttctatctccgctgtgaagaaccacacctggcctgtag---------------gtgctcagcacatgtttgttgaatgaacgCACC-TTTCTAAATC----ACAAGCTGGCAGAA--CGGGGGG----GCC----TTTCTCAAACTCTGTCTCTAGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21080213 263 -  24206276 TCTCTCCTCCTTGGGCTCGTGTTTCTGGAGGAGGTAGA-----GAGTATCAAAGGTCTCTGTTAGCTCTGGGAGTCCGAGATTTAAAGGccc-ctagaatggaaacctcaggg--ccaagggctcctgtctgttcttttctgtcttctgtctctgctgtgaagaaccatacctggcctgtag---------------gtgctcagcagatgtttgttgaatgaacgCACC-TTTCTAAATC----ACAAGCTGGCAGAA--TGGGGGG----GCC----TTTCTCAAACTCTGTCTCTAGA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        17797 259 -   1784207 tctctcctccttgggcccgtgtttctggaggaggtaga-----gagtatcaaaggtctctgttagctctgggagtccgagattTAAAGGccc-ctagaatggaaacttcaggg--acaagggctcctgtctgtccttttc----ttatatctctgctgtgaagaaccgtacctggcccctac---------------gtgctcagtagatgtttgttgaatgaacgCACC-TTTCTAAATC----ACAAGCTGGCAGAA--CGGGGGG----GCC----TTTCTCCAACTCTGTCTCTAGA
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             420900 262 -  31380117 tctctcctcc-tgggcttgagtttcctaagaaggtgga------attagcaaaggtctcttttagctctgaaaatcaaagattTCTAGGccc-----actagaaacaacaggg--taaagggat-ttatctgtccttttcatttctgtgtccctgtgattaagagtagtagcaggcctgtagtc------------tgtgctcagtaaatatgtgttgaatgaatgTACC-CTCCTAAATC----ACAAGCTGGCAGAA---GGGTAGTCTTTCT----TTCCTCAAACTCTATTTCAAGA
i otoGar3.GL873533          C 0 I 6282
s canFam3.chr9               55242579 236 +  61074082 cctttcctctctgggcttcagtctcctgaggaggtagaattagaggtgtccaaggtcccctttagctcagagaatcAG-----------------------------------------------------gtccttctcattcctgtatccctgctattaagaacagaacctggcctgtgggtacttaggcccagggtgctcagtaaatacttgttgaatgaaAGCACC-CTTCCAAATC----ACGAGCTACCAGAA---GGGTAG----TCTCTTGCTTCTCAACTCCTGTTTCTGGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             173618 265 +    584178 cttctcttcactggccttcagttgcctgaaggagtaga-----a-----ttacggtatctttgagctcTAAAAAGCAAAGACTGAAAGGTCTGTtagaatg------ttagggaatgtggggatcttgtctatcctttgcattcctctgtccctgctagtaagaatagtacccagcccatag------------tatatgctcagtaaatctttgctgaatgaatgCGCC-CTTTCAAATCGTGAGTGAGCTGGCAGGT---GGGTTGTCTTTCC----CTTTTCAGACTCCGTTTCTAGA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1003935 1322 +   1024465 I
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=7200.000000
s hg38.chr15_KI270850v1_alt    312426 2 +    430880 GG
s panPan2.chr15              76668746 2 +  99763055 GG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        19826 2 -   1709092 GG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60863788 2 + 169600520 GG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108390813 2 - 171882078 GG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21080476 2 -  24206276 GG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        18056 2 -   1784207 GG
i colAng1.NW_012117110v1    C 0 C 0
s canFam3.chr9               55242815 2 +  61074082 GG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             173883 2 +    584178 GG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1003935 1322 +   1024465 I
e otoGar3.GL873533             421162 6282 -  31380117 I
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=7092.000000
s hg38.chr15_KI270850v1_alt    312428 2 +    430880 TT
s panPan2.chr15              76668748 2 +  99763055 TT
i panPan2.chr15             C 0 I 3292
s gorGor5.CYUI01015556v1        19828 2 -   1709092 TT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60863790 2 + 169600520 TT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108390815 2 - 171882078 TT
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21080478 2 -  24206276 TT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        18058 2 -   1784207 TT
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             427444 2 -  31380117 TC
i otoGar3.GL873533          I 6282 C 0
s canFam3.chr9               55242817 2 +  61074082 TT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             173885 2 +    584178 TT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1003935 1322 +   1024465 I
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macNem1.NW_012011056v1        63149 3207 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=808.000000
s hg38.chr15_KI270850v1_alt    312430 1 +    430880 C
s gorGor5.CYUI01015556v1        19830 1 -   1709092 C
i gorGor5.CYUI01015556v1    C 0 C 0
s macNem1.NW_012011056v1        66356 1 +   6271500 C
i macNem1.NW_012011056v1    I 3207 C 0
s colAng1.NW_012117110v1        18060 1 -   1784207 C
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1005257 1 +   1024465 C
i cebCap1.NW_016107979v1    I 1322 C 0
s otoGar3.GL873533             427446 1 -  31380117 T
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55242819 1 +  61074082 T
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             173887 1 +    584178 T
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e panPan2.chr15              76668750 3292 +  99763055 I
e manLeu1.NW_012105520v1       401413 3929 -   1458659 I
e chlSab2.chr29              21080480 0 -  24206276 C
e cerAty1.NW_012001384v1        62130 3935 -   5160157 I
e macFas5.chr7              108390817 0 - 171882078 C
e rheMac8.chr7               60863792 0 + 169600520 C
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=4095.000000
s hg38.chr15_KI270850v1_alt    312431 1 +    430880 A
s gorGor5.CYUI01015556v1        19831 1 -   1709092 A
i gorGor5.CYUI01015556v1    C 0 C 0
s macNem1.NW_012011056v1        66357 1 +   6271500 A
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        66065 1 -   5160157 A
i cerAty1.NW_012001384v1    I 3935 C 0
s manLeu1.NW_012105520v1       405342 1 -   1458659 A
i manLeu1.NW_012105520v1    I 3929 C 0
s colAng1.NW_012117110v1        18061 1 -   1784207 A
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1005258 1 +   1024465 A
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             427447 1 -  31380117 A
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55242820 1 +  61074082 A
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             173888 1 +    584178 A
i dasNov3.JH564958          C 0 I 5287
e calJac3.chr10             114305364 247 - 132174527 I
e panPan2.chr15              76668750 3292 +  99763055 I
e chlSab2.chr29              21080480 0 -  24206276 C
e macFas5.chr7              108390817 0 - 171882078 C
e rheMac8.chr7               60863792 0 + 169600520 C
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=12068.000000
s hg38.chr15_KI270850v1_alt    312432 4 +    430880 CCAG
s gorGor5.CYUI01015556v1        19832 4 -   1709092 TCAG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60863792 3 + 169600520 -CAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108390817 3 - 171882078 -CAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        66358 4 +   6271500 CCAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        66066 4 -   5160157 CCAG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              21080480 3 -  24206276 -CAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       405343 4 -   1458659 CCAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        18062 4 -   1784207 CCAG
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1005259 4 +   1024465 CCAG
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             427448 4 -  31380117 CCAG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55242821 3 +  61074082 TCC-
i canFam3.chr9              C 0 I 4003
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             173889 5287 +    584178 I
e panPan2.chr15              76668750 3292 +  99763055 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=5159.000000
s hg38.chr15_KI270850v1_alt    312436 1 +    430880 C
s gorGor5.CYUI01015556v1        19836 1 -   1709092 C
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60863795 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108390820 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        66362 1 +   6271500 T
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        66070 1 -   5160157 C
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              21080483 1 -  24206276 C
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       405347 1 -   1458659 C
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        18066 1 -   1784207 C
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1005263 1 +   1024465 C
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             427452 1 -  31380117 C
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958             179176 1 +    584178 C
i dasNov3.JH564958          I 5287 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e canFam3.chr9               55242824 4003 +  61074082 I
e panPan2.chr15              76668750 3292 +  99763055 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=173137.000000
s hg38.chr15_KI270850v1_alt    312437 40 +    430880 CCCTC-CCTCCAGGGCCC-------TTTTCCCCCTTTGCTTTGGGCAG
s gorGor5.CYUI01015556v1        19837 40 -   1709092 CCCTC-CCTCCAGGGCCC-------TTTTCCCCCTTTGCTTTGGGCAG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60863796 39 + 169600520 CCCTA-TCACCAGGGCCC--------TTTCGCCCTGTGCTTTGGGCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108390821 39 - 171882078 CCCTA-TCACCAGGGCCC--------TTTCGCCCTGTGCTTTGGGCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        66363 38 +   6271500 CCATC-TCTCCAGGGCCC--------TTTC-CCCTGTGCTTCGGGCAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        66071 40 -   5160157 CCCTCTTCTCCAGGGCCC--------TTTCCCCCTGTGCTTTGGGTAG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              21080484 39 -  24206276 CCCTA-TCACCAGGGCCC--------TTTCGCCCTGTGCTTTGGGCAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       405348 40 -   1458659 CCCTCTTCTCCAGGGCCC--------TTTCCCCCTGTGCTTTGGGCAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        18067 39 -   1784207 CCCTC-TCTCCAGGGCCC--------TTTCACCCTGTGCTTTGGCCAG
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1005264 39 +   1024465 CCCTC-TCTCCAGGGCCC--------TTTCCCCCTGTGCTTTGGGCAG
i cebCap1.NW_016107979v1    C 0 I 86
s otoGar3.GL873533             427453 38 -  31380117 CCCTC-TCTCTGTGGTTC--------TTT-GCCCTGTGCTCTGAACAG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55246827 39 +  61074082 CCCCC-ACCCATGTACCC--------ATCCCCCCTGTGATTTGGGCAG
i canFam3.chr9              I 4003 C 0
s dasNov3.JH564958             179177 47 +    584178 CCCTT-TCCTCAATATCCATATATTCCTTCTCCCTGTGCTTTGGACAG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e panPan2.chr15              76668750 3292 +  99763055 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=328217.000000
s hg38.chr15_KI270850v1_alt    312477 86 +    430880 GTTCGCACATCTAAGGAGGAGAAGAAGCATGAGATACATCTGGTACAGAAGCTTGGGAGGAGCTTGTTCAAACTC-AAAAACCAGAC
s gorGor5.CYUI01015556v1        19877 87 -   1709092 GTTCGCACATCTAAGGAGGAGAAGAAGCATGAGATACATCGGGTACAGAAGCTTGGGAGGAGCTTGTTCAAATTCAAAAAACCAGAC
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60863835 86 + 169600520 GTTCACACATTGAAGGAGGAGAAGAAGCGTGAGATACATCGGGTACAGAAGCTTGGGAGGAGCTTGTTCAAACTC-AAACACCAGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108390860 86 - 171882078 GTTCACACATTGAAGGAGGAGAAGAAGCGTGAGATACATCGGGTACAGAAGCTTGGGAGGAGCTTGTTCAAACTC-AAACACCAGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        66401 85 +   6271500 GTTCGCACATTGAAGGAGGAGAAGTAGCATGAG-TGCATCAAGTACAGAAGCTGGAGACAAGCTTGGCTGAACTG-AAGAACCAGAT
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        66111 86 -   5160157 GTTTGCACATTGAAGGAGGAGAAGAAGCATGACCTGCATCAGGTACAGGAGCTGGAGACAAGCTTGACCAAACTG-AAGAATCAGAT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              21080523 86 -  24206276 GTTCGCACATTGAAGGAGGAGCAGCAGCGTGAGATACATCGGGTACAGAAGCTTGGCAGGAGCTTCTTCAAACTC-AAACACCAGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       405388 86 -   1458659 GTTTGCACATTGAAGGAGGAGAAGAAGCATGACCTGCATCAGGTACAGGAGCTGGAGACAAGCTTGACCAAACTG-AAGAACCAGAT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        18106 86 -   1784207 GTTCGCACATTGAATGAGGAGAAGCAGCATGAGATACATCGGGTACAGAAGCTTGGGAGGAGCTTGTTCAAACTC-AAACACCAGAG
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             427491 86 -  31380117 ATGCGCATATTGAAGGAGGAGAAGGAGCAGAGTGTGACTCAGGTGCGGGAGCTAGAGACCAGCTTGGCTGAACTG-AGGAACCAGAC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55246866 86 +  61074082 ATGCACAGATTGAGGGAAGAGAAGGAGCACAGCATGAGTCAGGTGCAGGAGTTGGAGGCCAACTTGGCTGAACTG-AAGAACCAGAT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179224 86 +    584178 ATGCAAACACTGAGGGAGGAGAAGGAGCATAGCATGTGTCAGGTGCAGGAACTGGAGACCAGTTTGGCTAAACTG-AAGAATGAGAC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1005303 86 +   1024465 I
e panPan2.chr15              76668750 3292 +  99763055 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=1266302.000000
s hg38.chr15_KI270850v1_alt    312563 280 +    430880 GGGTAAGATGGGGCTGCCATGACCTGGCAGCTGGACTGGCATTAGAGGGCT-GTGGGGGTGACTTAGAATGCCCCAGGGAGGTGGGTGGATGGAAGGGCTTTGAGGCAGAGGGAAAGAGGTCTG-TGCCAGGGG-------------------------Aggacaagtcttgtcatctccatgagcctcagtgtccccatcagtaaagaggga--gGAGTGCCCATTGTCAGCCACC-----C---ACAGTGCT--------------------CTCTA---------TCTGAAAGTG---------------------------------------------------------ACTTGGAAGACTGGCTACCATCCGGGTGTGAGGAGTCATTAGCAGTGA
s gorGor5.CYUI01015556v1        19964 280 -   1709092 GGGTAAGATGGGGCTGGCATGACCTGGCAGCAGGACTGGCATTAGAGGGCT-GTGGGGGTGACTTAGAATGCCCCAGGGAGGTGGGTGGATGGAAGGGCTTTGAGGCAGAGGGAAAGACGTCTG-tgccagggg-------------------------aggacaagtcttgtcatctccatgagcctcagtgtccccatcagtaaagaggga--ggagtgCCCATTGTCAGCCACC-----C---ACAGTGCT--------------------CTCTA---------TCTGAAAGTG---------------------------------------------------------ACTTGGAAGATTGGCTGCCATCCGGGTGTGAGGAGTCATTAGCAGTGA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60863921 279 + 169600520 GGGTAAGATGGGGCTGGCGTGACCTGGGAGCAGGACCGGCATCAGAGGGCT-GTGGGGGTGGCTTAGAATGCCCCAGGGAGGTGGGTGGATGGAAGGGCTTTGAGGCAGAGGGAGAGAGGTCTG-TGCCAGGAG-------------------------ACTGCAAGCCTTGTCATCTGCTTGAGCCTTGGTGTCCCCATCAGCAAAGAGGGA--GGAGTGCCCATTGTCAGCCACC-----C---ACAGTGCT--------------------CTCCA---------T-TGAAAGTG---------------------------------------------------------GCTTGGAAGATTGGCTACCATCTGGGTGCGAGGGATCCTTAGCAGTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108390946 279 - 171882078 GGGTAAGATGGGGCTGGCGTGACCTGGGAGCAGGACCGGCATCAGAGGGCT-GTGGGGGTGGCTTAGAATGCCCCAGGGAGGTGGGTGGATGGAAGGGCTTTGAGGCAGAGGGAGAGAGGTCTG-TGCCAGGAG-------------------------ACTGCAAGCCTTGTCATCTGCTTGAGCCTTGGTGTCCCCATCAGCAAAGAGGGA--GGAGTGCCCATTGTCAGCCACC-----C---ACAGTGCT--------------------CTCCA---------T-TGAAAGTG---------------------------------------------------------GCTTGGAAGATTGGCTACCATCTGGGTGCGAGGAATCCTTAGCAGTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        66486 280 +   6271500 GGGTGAGCTGGGGTTGGCGTGACCTGGAAGCAGGACCGGCATCAGAGGGCT-GTAGGGGTGGCTTAGAATGCCCCAGGGAGGTGGGTGCATGGAAGGGCTTTGAGGCAGAGGGAAAGAGGTCAG-TGCCAGGAG-------------------------ACAgcaagtcttgtaatctccatgagcctccgtgtccccatcagcaaaGAAGGA--GGAGTGCCAGTTGTCAGCCACC-----C---ACAGCGCT--------------------CTCTG---------TCTGAAAGTG---------------------------------------------------------GCTTGGAAGATTGACTACCATCCGGGTGCAAGGAATCATTAGCAGGGA
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        66197 279 -   5160157 GGGTGAGCTGGGGCTGGGGTGACCTCAAAGCAGGACTGGCATCGGAGGGCT-GTGGGGGTCGCTTAGAATGCCCCAGGGAGGTGGGTGGATGGAAGGGCTTTGAGGCAGAGGGAAAGAGGTCTG-TGCCAGGAG-------------------------ATggcaagtcttgtcatctccataagcctcagtgtccccatcaataaagaggga--gGAGTGCCAATTGTCAGCCACT-----C---ACAGTGCT--------------------CTCTA---------TCTGAAAGGG---------------------------------------------------------GCTTGGAAGATTGGCTACCATC-GAGTACAAGGAATCATTAGCAGGGA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              21080609 279 -  24206276 GGGTAAGATGGGGCTGGCGTGACCTGGGAGCAGGACCGGCATCACAGGGCT-GTGGGGGTGGCTTAGAATGCCCCAGGGAGGTGGGTGGATGGAAGGGCTTTGAGGCAGAGGGAGAGAGGTCTG-TGCCAGGAG-------------------------ACTGCAAGCCTTGTCATCTGCTTGAGCCTTGGTGTCCCCATCAGCAAAGAGGGA--GGAGTGCCCATTGTCAGCCACC-----C---ACAGTGCT--------------------CTCCA---------T-TGAAAGTG---------------------------------------------------------GCTTGGAAGACTGGCTACCATCTGGGTGCGAGGAATCCTTAGCAGTGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       405474 279 -   1458659 GGGTGAGCTGGGGCTGGGGTGACCTCAAAGCAGGACTGGCATTGGAGGGCT-GTGGGGGTCGCTTAGAATGCCCGAGGGAGGTGGGTGGATGGAAGGGCTTTGAGGCACAGGGAAAGAGGTCTG-TGCCAGGAG-------------------------ATGGCAAGTCTTGTCATCTCCATGAGCCTCAGTGTCCCCAACAACAAAGAGGGA--GGAGTGCCTATTGTCAGCCACC-----C---ACAGTGCT--------------------CTCTA---------TCTGAAAGGG---------------------------------------------------------GCTTGGAAGATTGGCTACCATC-GAGTACAAGGAATCATTAGCAGGGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        18192 280 -   1784207 GGGTTAGATGGGGCTGGCGTGACCTGGGAGCAGGACCGGCATCAGAGGGCT-GTGGGGGTGGCTGAGAATGCCCCAGGGAGGGGGGTGGATGGAAGGGCTTTGAGGCAGAGGGAGAGAGGTCTG-TGCCAGGAG-------------------------ATggcaagtcttgtcatctccatgagcctcagtgtccccatcagcaaagaggga--gGAGTGCCCGTTGTCAGCCACC-----C---ACAGTGCT--------------------CTCTA---------TCTGAAAGTG---------------------------------------------------------GCTTGGAAGACTGGCTACCATCTGGGTGCGAGGAATCATTAGCAGTGA
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1005389 279 +   1024465 GGGTAAGATGGGGCTGGCGTGACCAGGGAGCAGGACTGGCATCAGATGGCT-GTGGGGGTGGCTTAGAGTGCCCCAGGGAGGTGGGTGGCTGGAAGGGCTTTGAGGCAGAGGGAAAGAGGTCTG-tgctaggag-------------------------acggcaagtcttgtaatctccatgagcctcagtgtccccatcag-aaagaggga--gGGGTGCCTGTTGTCAGCCACC-----C---ACAGTGCT--------------------CTCTA---------TGTGAAAGTG---------------------------------------------------------GCTTGGAAGACTGGCTACCATTTTGGTGTGAGGAATCATTAGCAGTGA
i cebCap1.NW_016107979v1    I 86 C 0
s otoGar3.GL873533             427577 287 -  31380117 AGGTAAGCTGGGGTTCAGGGGACCTGGGAGGAGGATT-GTGTCGGAGCACT-GT-GAGGTGGCTAGGAATGCCCTCAGGAGGTAGAAAAATAGCAGAGCTTTGGGGCAAAGGGAAAGAGGTCTG-TGCTAGGAG-------------------------GTGGCAAGTCTCGTGTCTCCCTTGAGACTCTGTGTCCACATT--TACAGAGGGA---GAATGCCCATCCACAATTGTCTTTAGC---ACAATAATG-------------TAAAAACACTA---------TTTGAAAGTG---------------------------------------------------------GCTTGAAAGAGTGACCATCATAGGAATGTGAGGAATACTTATCCAAGA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55246952 264 +  61074082 AGGTAAGCTGAGGCAGGAG-GATCTGGGAGCAGGATTGGTGCCAGAGGGCTGGTGAGGATGCCTTCAAATGCCCTAAGGATGTGGGTGGATGGAAGGGGACTGTGGCCCAGGGAAAGAGGTCCG-TACTAGGAG-------------------------TTGGCCAGGTT---------------------------------------GGGC--AGTGTGCCCGCTGGCAACCACT-----CCGAATTGTCCTGAGCATAAAAATATTAAAAACTCTT---------TTCAAAAGTG---------------------------------------------------------TCTTGAAAGAGTGCATATCCCCTGAGGGTGAGGGATTGTGAGCCAGGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179310 364 +    584178 AGGTATGCTGGGTCTGGAGTAATCTGAGAGCAGAAGTGGTGTCAGAGGGCTGGTGAGGATGGCTTAGAATGTCTGTGAGAGGTG-----------GTGATTATGGCCAAGGGGAAAgagttctgttaccaggagttggcactgacttactatgtgacctttggcaagtcttataatttctctgagtttcattgtctccatctgcaaaaaggggatggagtacccactgtcaaccatc-----c---agaattgt--------------------cttgagtatagaaCTATAAAAGAACTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTGGAATATTGAACATCATATGGGTGTGAGGAATTATTAGCAAGGA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e panPan2.chr15              76668750 3292 +  99763055 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=99274.000000
s hg38.chr15_KI270850v1_alt    312843 27 +    430880 ------GGCCAAG-TTTGGGAAGCCTGAGAGGAG
s panPan2.chr15              76672042 27 +  99763055 ------GGCCAAG-TTTGGGAAGCCTGAGAGGAG
i panPan2.chr15             I 3292 I 51
s gorGor5.CYUI01015556v1        20244 27 -   1709092 ------GGCCAAG-TTTGGGAAGCCTGAGAGGAG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60864200 27 + 169600520 ------GGCCAAG-TTTGGGAAGCCTGAGAGGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391225 27 - 171882078 ------GGCCAAG-TTTGGGAAGCCTGAGAGGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        66766 24 +   6271500 ------GGCCAAG-TGTGGGAAGCCTGA---GAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        66476 24 -   5160157 ------GGCCAAG-TTTGCAGAGCCTGA---GAG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              21080888 24 -  24206276 ------GGCCAAG-TTTGGGAAGCCTGA---GAG
i chlSab2.chr29             C 0 I 3
s manLeu1.NW_012105520v1       405753 24 -   1458659 ------GGCCAAG-TTTGCAGAGCCTGA---GAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        18472 27 -   1784207 ------GGCCAAG-TTTGGGAAGCCTGAGAGGAG
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1005668 24 +   1024465 ------GGCCAGG-TTTGGGGAGCCTGA---GAG
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             427864 19 -  31380117 ------AGCCAAGATTTGGGGTGAA---------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247216 22 +  61074082 ------AGCCAAGGTTTGGGGCG------AGGAG
i canFam3.chr9              C 0 I 10
s dasNov3.JH564958             179674 32 +    584178 AAGCAGGACTTGG-GGTGAGGAGCATGA-ATTAG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=72544.000000
s hg38.chr15_KI270850v1_alt    312870 30 +    430880 GAGCTGTGCACCGAAGGGAGGA------------tttttttt
s gorGor5.CYUI01015556v1        20271 32 -   1709092 GAGCTGTGCACCAAAGGGAGGA----------Attttttttt
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60864227 42 + 169600520 GAGCTCTGCACCAATGGGAGGATTTCtttttttttttttttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391252 41 - 171882078 GAGCTCTGCACCAATGGGAGGAttt-tttttttttttttttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        66790 37 +   6271500 GAGTTGTGGACCAAGAGGAGGG-----tgttttgttttgttt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        66500 22 -   5160157 GAGCTGTGCACCAAGAGGAGGG--------------------
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              21080915 25 -  24206276 GAGCTCTGCACCAATGGGAGAA-----------------TTT
i chlSab2.chr29             I 3 C 0
s manLeu1.NW_012105520v1       405777 22 -   1458659 GAGCTGTGCACCAAGAGGAGGG--------------------
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        18499 41 -   1784207 GAGCTGTGCACCAAAGGGAGGA-ttttttttgtttgtttgtt
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1005692 29 +   1024465 GAGCTGTGCACCAAGAAGAGAT-------------TTTTTTG
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             427883 30 -  31380117 GAGCTTTAGACCATAAAGAGGG------------TTTTTTGT
i otoGar3.GL873533          C 0 I 531
s canFam3.chr9               55247248 22 +  61074082 GAGCTGTGGATCAAGAAGAGGG--------------------
i canFam3.chr9              I 10 C 0
s dasNov3.JH564958             179706 22 +    584178 GAGCTGTGGACCAAGAAGAGAG--------------------
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e panPan2.chr15              76672069 51 +  99763055 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=11356.000000
s hg38.chr15_KI270850v1_alt    312900 7 +    430880 ttttttt
s gorGor5.CYUI01015556v1        20303 7 -   1709092 ttttttt
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60864269 7 + 169600520 ttttttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391293 7 - 171882078 ttttttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        66827 7 +   6271500 tgttctt
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        66522 2 -   5160157 -----TT
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              21080940 7 -  24206276 TTTTTTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       405799 2 -   1458659 -----TT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        18540 7 -   1784207 tttgttt
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1005721 7 +   1024465 TTTTATG
i cebCap1.NW_016107979v1    C 0 C 0
s canFam3.chr9               55247270 3 +  61074082 ----CTT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179728 2 +    584178 -----TT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e otoGar3.GL873533             427913 531 -  31380117 I
e panPan2.chr15              76672069 51 +  99763055 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=46950.000000
s hg38.chr15_KI270850v1_alt    312907 7 +    430880 ttttGAG
s gorGor5.CYUI01015556v1        20310 7 -   1709092 ttttGAG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60864276 7 + 169600520 ttttGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391300 7 - 171882078 ttttGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        66834 7 +   6271500 ttttgAG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012001384v1        66524 7 -   5160157 TTTTGAG
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              21080947 7 -  24206276 TTTTGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       405801 7 -   1458659 TTTTGAG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        18547 7 -   1784207 ttttGAG
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1005728 7 +   1024465 TTTTGAG
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             428444 7 -  31380117 TTTTGAG
i otoGar3.GL873533          I 531 C 0
s canFam3.chr9               55247273 7 +  61074082 TTTTGAA
i canFam3.chr9              C 0 I 7
s dasNov3.JH564958             179730 7 +    584178 TTTAGAG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e panPan2.chr15              76672069 51 +  99763055 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=241927.000000
s hg38.chr15_KI270850v1_alt    312914 41 +    430880 -------AATCCAGAGGCCCTTATTGTCTGCTTCCTTTCT-----------CAGCTGAA
s panPan2.chr15              76672120 41 +  99763055 -------AATCCAGAGGCCCTTATTGTCTGCTTCATTTCT-----------CAGCTGAG
i panPan2.chr15             I 51 C 0
s gorGor5.CYUI01015556v1        20317 41 -   1709092 -------AATCCAGAGGCCCTTATTCTCTGCTTCCTTTCT-----------CAGCTGAA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60864283 41 + 169600520 -------AATCCAGAGACCCTTATTGTCTGCTTCCTTTCT-----------CAGCTGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391307 41 - 171882078 -------AATCCAGAGACCCTTATTGTCTGCTTCCTTTCT-----------CAGCTGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        66841 41 +   6271500 -------AATCCAGAGGCACTTATTGTCTGCTTCCTTTTT-----------CAGCCGAA
i macNem1.NW_012011056v1    C 0 I 388
s cerAty1.NW_012001384v1        66531 41 -   5160157 -------AATCCAGAGGCCCTTATTGTCTGCTTCCTTTTT-----------CAGCTGAA
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              21080954 41 -  24206276 -------AATCCAGAGACCCTTATGGTCTGCTTCCTTTCT-----------CAGCTGAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       405808 41 -   1458659 -------AATCCAGAGGCCCTTATTGTCTGCTTCCTTTCT-----------AAGCTGAA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        18554 41 -   1784207 -------AATCCAGAGGCCCTTATTGTCTGCTTCCTTTCT-----------CAGCTGAA
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1005735 41 +   1024465 -------GATCCAGAGGCCCTCATTGTCTGCTTCCTTTCT-----------CAGCTGAA
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             428451 41 -  31380117 -------AATCCAGAGGCCCTTAACCATGCTCTTCTTCCT-----------CAGCTGAA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247287 52 +  61074082 -------AGGTGAGAGGCCCCTAGCGTGTGTCCCCCTCCCCCTGCTCCCCACAGTGGTG
i canFam3.chr9              I 7 C 0
s dasNov3.JH564958             179737 48 +    584178 AACACAGAAGTGAGAAGCCTTTATTATGTGCTTCCTTTCT-----------CAGCTGTA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=125203.000000
s hg38.chr15_KI270850v1_alt    312955 28 +    430880 CCCCTGGCCCCAGAGCCCCCAGCAGGGC
s panPan2.chr15              76672161 28 +  99763055 CCCCGGTTCCCGGCACCCCCAGCAGGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        20358 28 -   1709092 CCCCTGGCCCCAGAGCCCCCAGCAGGGC
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60864324 28 + 169600520 CCCCAGGCCCCAGATTCCCCAGGAGGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391348 28 - 171882078 CCCCGGGCCCCAGATTCCCCAGGAGGGC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1        66572 28 -   5160157 CCCCTACACCTGGAGCCCCCAGCAGGAC
i cerAty1.NW_012001384v1    C 0 C 0
s chlSab2.chr29              21080995 28 -  24206276 CCCCGGGCCTCAGATCCCCCAGCAGGGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       405849 28 -   1458659 CCCCTACACCTGGAGCCCCCAGCAGGAC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        18595 28 -   1784207 CCCCTGGCCCCAGAGCCCCCAGCAGGAC
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1005776 28 +   1024465 CCCCCAATCCCGAAGCCCCCAGCAGGGC
i cebCap1.NW_016107979v1    C 0 I 167
s otoGar3.GL873533             428492 28 -  31380117 GCCCCATCCCCAGCGCCCCCTGCAGGGC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247339 28 +  61074082 CCCCCAGCCCAGGAGCCCCCAGCCAGGC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179785 28 +    584178 CCCCCACCCCAGGAGCCCCCGGCTGGGT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=76341.000000
s hg38.chr15_KI270850v1_alt    312983 18 +    430880 CATCTAAGGTAG---AGCAGC---
s panPan2.chr15              76672189 18 +  99763055 CCTCTGAGTTGG---AGCAGC---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        20386 18 -   1709092 CATCTAAGGTGG---AGCAGC---
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60864352 18 + 169600520 CCTCTGAGGTGG---AGCAGC---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391376 18 - 171882078 CCTCTGAGGTGG---AGCAGC---
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012001384v1        66600 18 -   5160157 CCTCAGAGGTGG---AGCAGC---
i cerAty1.NW_012001384v1    C 0 N 0
s chlSab2.chr29              21081023 18 -  24206276 CCTCTGAGGTGG---AGCAGC---
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       405877 21 -   1458659 CCTCAGAGGTGGAGCAGCAGC---
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        18623 18 -   1784207 CCTCTGAGGTGG---AGCAGT---
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             428520 18 -  31380117 CCTCGGAGGTGG---AACAGC---
i otoGar3.GL873533          C 0 I 3
s canFam3.chr9               55247367 18 +  61074082 CCTTGGAGGAGG---AGCAGC---
i canFam3.chr9              C 0 I 6
s dasNov3.JH564958             179813 21 +    584178 ACTCTGAGGTGG---AACAGCAGC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=100145.000000
s hg38.chr15_KI270850v1_alt    313001 31 +    430880 TACAAGATGAGACCAACCACCTAAGGAAGGA
s panPan2.chr15              76672207 31 +  99763055 TACAAGATGAGGCCAAACAGCTGAGGAAGGA
i panPan2.chr15             C 0 I 32
s gorGor5.CYUI01015556v1        20404 31 -   1709092 TACAAGATGAGACCAACCACCTAAGGAAGGA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60864370 31 + 169600520 TACAAGATGAGACCAAACACCTAAGGAAGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391394 31 - 171882078 TACAAGATGAGACCAAACACCTAAGGAAGGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21081041 31 -  24206276 TACAAGATGAGACCAAACACCTAAGGAAGGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       405898 31 -   1458659 TATAAGCTGAGGTCAAGCACCTGTGAAAGGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        18641 31 -   1784207 TACAAGATGAGACCAAACACCTAAGGAAGGA
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             428541 31 -  31380117 TGCAAGCAGAAGCGGAGCAGCTGCAAAAGCA
i otoGar3.GL873533          I 3 C 0
s canFam3.chr9               55247391 31 +  61074082 TGCACGCCGAGACTGAACAACTACAGAAGGA
i canFam3.chr9              I 6 C 0
s dasNov3.JH564958             179834 31 +    584178 TGCAAGCAGAGGCTGAAAAGCTGCAGAAGGA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=88618.000000
s hg38.chr15_KI270850v1_alt    313032 32 +    430880 GCTAGAGAGTGTGGGAAGACAGCTCCAGGCTG
s gorGor5.CYUI01015556v1        20435 32 -   1709092 GCTAGAGAGTGTGGGAAGACAGCTCCAGGCTG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60864401 32 + 169600520 GCTGGAGAGTCCGGGAAGACAGCTCCAGGCCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391425 32 - 171882078 GCTGGAGAGTCTGGGAAGACAGCTCCAGGCCG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21081072 32 -  24206276 GCTGGAGAGTCTGGGAAGACAGCTCCAGGCCG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       405929 32 -   1458659 GCTGGAGAGTCTGGCAGGACAGCTCCAAGCCC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        18672 32 -   1784207 GCTGGAGAGTCTGGGAAGACAGCTCCAGGCCG
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             428572 32 -  31380117 GCTGGAAAGCCTGGCAGGACAGCTGCGTGACC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247422 32 +  61074082 GCTGGAGAGCCTGGCCGAGCAGGTGCAGGCCC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179865 32 +    584178 GCTAGAGAACCTAGCAGAGCGACTGCAGGCTC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e panPan2.chr15              76672238 32 +  99763055 I
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=32184.000000
s hg38.chr15_KI270850v1_alt    313064 8 +    430880 AGGTGGAA
s panPan2.chr15              76672270 8 +  99763055 AGGTGGAA
i panPan2.chr15             I 32 C 0
s gorGor5.CYUI01015556v1        20467 8 -   1709092 AGGTGGAA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60864433 8 + 169600520 AGGTGGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391457 8 - 171882078 AGGTGGAA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21081104 8 -  24206276 AGGTGGAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       405961 8 -   1458659 AGGTGGAA
i manLeu1.NW_012105520v1    C 0 I 212
s colAng1.NW_012117110v1        18704 8 -   1784207 AGGTGGAA
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             428604 8 -  31380117 AGGTGCAA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247454 8 +  61074082 AAGTGAAA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179897 8 +    584178 AGGTACAT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=72868.000000
s hg38.chr15_KI270850v1_alt    313072 25 +    430880 AACAATCAGATGTTGAGTCTCCTGA
s panPan2.chr15              76672278 25 +  99763055 AACAACCAGACCTTGAGTCTCCTGA
i panPan2.chr15             C 0 N 0
s gorGor5.CYUI01015556v1        20475 25 -   1709092 AACAATCAGATGTTGAGTCTCCTGA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60864441 25 + 169600520 AACAATCAGATGTTGAGTCTCCTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391465 25 - 171882078 AACAATCAGATGTTGAGTCTCCTGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21081112 25 -  24206276 AACAATCAGATGCTGAATCTCCTGA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        18712 25 -   1784207 AACAATCAGATGTTGAGTCTCCTGA
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             428612 25 -  31380117 GACAATGAGGGTTTGATTCGCCTGA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247462 25 +  61074082 GACAACGAAGGTTTGAGTCGCCTGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179905 25 +    584178 GACAACGAGGGCCTGAGTCGCCTGA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=5033.000000
s hg38.chr15_KI270850v1_alt    313097 2 +    430880 AC
s gorGor5.CYUI01015556v1        20500 2 -   1709092 AC
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60864466 2 + 169600520 AC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391490 2 - 171882078 AC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21081137 2 -  24206276 AC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        18737 2 -   1784207 AT
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             428637 2 -  31380117 AC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247487 2 +  61074082 AC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179930 2 +    584178 AT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=55734.000000
s hg38.chr15_KI270850v1_alt    313099 21 +    430880 AGGAGACAGGAGGAGAGGCTA
s gorGor5.CYUI01015556v1        20502 21 -   1709092 AGGAGACAGGAGGAGAGGCTA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60864468 21 + 169600520 AGGAGACAGGAGGAGAGGATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391492 21 - 171882078 AGGAGACAGGAGGAGAGGATA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1            0 21 -   1987038 AGGAGACAGGAGGAGAGGATA
i cerAty1.NW_012002657v1    N 0 C 0
s chlSab2.chr29              21081139 21 -  24206276 AGGAGACAGAAGGAGAGGATA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        18739 21 -   1784207 AGGAAACAAGAGGAGAGGCTA
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             428639 21 -  31380117 CTGGAGCAGGGGCAGCGGCTA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247489 21 +  61074082 CGGGAGCAGGAGCAGCGGCTG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179932 21 +    584178 CAGGAGCAGGAGCAGCGGCTG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=1883.000000
s hg38.chr15_KI270850v1_alt    313120 1 +    430880 C
s gorGor5.CYUI01015556v1        20523 1 -   1709092 T
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60864489 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391513 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1           21 1 -   1987038 C
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21081160 1 -  24206276 C
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        18760 1 -   1784207 C
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             428660 1 -  31380117 C
i otoGar3.GL873533          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             179953 0 +    584178 C
e canFam3.chr9               55247510 0 +  61074082 C
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=16375.000000
s hg38.chr15_KI270850v1_alt    313121 11 +    430880 GTGAACAGGAG
s gorGor5.CYUI01015556v1        20524 11 -   1709092 GTGAACAGGAG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60864490 11 + 169600520 GTGAGCAGAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391514 11 - 171882078 GTGAGCAGGAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1           22 11 -   1987038 GTGAGCAGGAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21081161 11 -  24206276 GTGAGCAGGAG
i chlSab2.chr29             C 0 C 0
s otoGar3.GL873533             428661 11 -  31380117 GGGAGCTGGAG
i otoGar3.GL873533          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             179953  0 +    584178 C
e canFam3.chr9               55247510  0 +  61074082 C
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e colAng1.NW_012117110v1        18761  0 -   1784207 C
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=7230.000000
s hg38.chr15_KI270850v1_alt    313132 5 +    430880 GAGAG
s gorGor5.CYUI01015556v1        20535 5 -   1709092 GAGAG
i gorGor5.CYUI01015556v1    C 0 I 956
s rheMac8.chr7               60864501 5 + 169600520 GAGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391525 5 - 171882078 GAGAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1           33 5 -   1987038 GAGAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21081172 5 -  24206276 GAGAG
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             179953 0 +    584178 C
e canFam3.chr9               55247510 0 +  61074082 C
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e otoGar3.GL873533             428672 0 -  31380117 C
e colAng1.NW_012117110v1        18761 0 -   1784207 C
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=5277.000000
s hg38.chr15_KI270850v1_alt    313137 5 +    430880 GCTAC
s gorGor5.CYUI01015556v1        21496 5 -   1709092 GCTAC
i gorGor5.CYUI01015556v1    I 956 C 0
s rheMac8.chr7               60864506 5 + 169600520 GATAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391530 5 - 171882078 GCTAC
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1           38 5 -   1987038 GATAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21081177 5 -  24206276 GATAC
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             179953 0 +    584178 C
e canFam3.chr9               55247510 0 +  61074082 C
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e otoGar3.GL873533             428672 0 -  31380117 C
e colAng1.NW_012117110v1        18761 0 -   1784207 C
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=142287.000000
s hg38.chr15_KI270850v1_alt    313142  92 +    430880 GTGAACAGGAGGAGAG---------------------GCTACGTGAACAGGAGGATAGGCTACATGAACAGGAGGAGAGGCTACGTGA--------------------ACAGGAGGAGAGGCTGTGTGAACAG
s panPan2.chr15              80423862  92 +  99763055 GTGAACAGGAGGAGAG---------------------GCTACGTGAACAGGAGGAGAGGCTACATGAACAGGAGGAGAGGCTACATGA--------------------ACAGGAGGAGAGGCTGTGTGAACAG
i panPan2.chr15             N 0 C 0
s gorGor5.CYUI01015556v1        21501  92 -   1709092 GTGAACAGGAGGAGAG---------------------GCTACGTGAACAGGAGGAGACGCTACGTGAACAGGAGGAGAGGCTACGTGA--------------------ACAGGAGGAGAGGCTACGTGAACAG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60864511  92 + 169600520 ATGAGCAGGAGGAGAG---------------------GCTATCTGGGCAGGAGGAGAGGATACGTGAACAGGAGGAGAGGATACGTGA--------------------GCAGGAGGAGAGGATACGTGAGCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391535  92 - 171882078 ATGAGCAGGAGGAGAG---------------------GCTATCTGGGCAGGAGGAGAGGATACGTGAGCAGGAGGAGAGGATACGTGA--------------------GCAGGAGGAGAGGATACGTGAGCAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1           43  92 -   1987038 ATGAGCAGGAGGAGAG---------------------GCTATCTGGGCAGGAGGAGAGGATACGTGAGCAGGAGGAGAGGATACATGA--------------------GCAGGAGGAGAGGATACATGAGCAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21081182 133 -  24206276 ATGAGCAGGAGGAGAGGATACGTGAGCAGGAGGAGAAGCTATCTGGGCAGGAGGAGAGGATACATGAGCAGGAGGAGAGGATACGTGAGCAGGAGGAGAGCTATCTGGGCAGGAGGAGAGGATACGTGAGCAG
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             179953   0 +    584178 C
e canFam3.chr9               55247510   0 +  61074082 C
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e otoGar3.GL873533             428672   0 -  31380117 C
e colAng1.NW_012117110v1        18761   0 -   1784207 C
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=14754.000000
s hg38.chr15_KI270850v1_alt    313234 11 +    430880 GAGGAGAGGCT
s gorGor5.CYUI01015556v1        21593 11 -   1709092 GAGGAGAGGCT
i gorGor5.CYUI01015556v1    C 0 I 1687
s rheMac8.chr7               60864603 11 + 169600520 GAGGAGAAGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391627 11 - 171882078 GAGGAGAAGCT
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1          135 11 -   1987038 GAGGAGAGGCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21081315 11 -  24206276 GAGGAGAAGCT
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             179953  0 +    584178 C
e canFam3.chr9               55247510  0 +  61074082 C
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e otoGar3.GL873533             428672  0 -  31380117 C
e panPan2.chr15              80423954  0 +  99763055 C
e colAng1.NW_012117110v1        18761  0 -   1784207 C
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=80501.000000
s hg38.chr15_KI270850v1_alt    313245  82 +    430880 ACGTGAACATGAGGAGAGGCTGTGTGAACAGGAG---------------------GAGAGGCTATGTGAACAGGAGGAGAGGCTACGTGAACAGGAGGAGAGG
s gorGor5.CYUI01015556v1        23291  82 -   1709092 ACGTGAACAGGAGGAGAGGCTACGTGAACAGGAG---------------------GAGACGCTACGTGAACAGGAGGAGAGGCTACGTGAACAGGAGGAGACG
i gorGor5.CYUI01015556v1    I 1687 C 0
s rheMac8.chr7               60864614  82 + 169600520 ACATGAGCAGGAGGAGAGGATATCTGGGCAGGAG---------------------GAGAGGATACATGAGCAGGAGAAGAGGATACATGAGCAGGATGAGAGG
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              108391638  82 - 171882078 ACATGAGCAGGAGGAGAGGATATCTGGGCAGGAG---------------------GAGAGGATACATGAGCAGGAGAAGAGGATACATGAGCAGGATGAGAGG
i macFas5.chr7              C 0 I 36
s cerAty1.NW_012002657v1          146 103 -   1987038 ATCTAAGCAGGAGGAGAGGATACGTGAGCAGGAGGAGAAGCTACATGAGCAGGATGAGAGGATACATGAGCAGGAGAAGAGGATACATGAGCAGGATGAGAGG
i cerAty1.NW_012002657v1    C 0 M 2260
s chlSab2.chr29              21081326 103 -  24206276 ATCTGGGCAGGAGGAGAGGATACATGAGCAGGAGGAGAAGTTATCTGGGCAGGAGGAGAAACTACATGAGCAGGAGGAGAAACTACATGAGCAGGAGGAGAGG
i chlSab2.chr29             C 0 I 21
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             179953   0 +    584178 C
e canFam3.chr9               55247510   0 +  61074082 C
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e otoGar3.GL873533             428672   0 -  31380117 C
e panPan2.chr15              80423954   0 +  99763055 C
e colAng1.NW_012117110v1        18761   0 -   1784207 C
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=638.000000
s hg38.chr15_KI270850v1_alt    313327 4 +    430880 CTGT
s gorGor5.CYUI01015556v1        23373 4 -   1709092 CTAC
i gorGor5.CYUI01015556v1    C 0 C 0
s macFas5.chr7              108391756 4 - 171882078 CTGT
i macFas5.chr7              I 36 C 0
s chlSab2.chr29              21081450 4 -  24206276 ATAC
i chlSab2.chr29             I 21 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             179953 0 +    584178 C
e canFam3.chr9               55247510 0 +  61074082 C
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e otoGar3.GL873533             428672 0 -  31380117 C
e panPan2.chr15              80423954 0 +  99763055 C
e colAng1.NW_012117110v1        18761 0 -   1784207 C
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e rheMac8.chr7               60864696 1 + 169600520 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=14694.000000
s hg38.chr15_KI270850v1_alt    313331 24 +    430880 GTGAACAGGAGGAGAGGCTACGTG
s gorGor5.CYUI01015556v1        23377 24 -   1709092 GTGAACAGGAGGAGAGGCTACGTG
i gorGor5.CYUI01015556v1    C 0 I 243
s macFas5.chr7              108391760 24 - 171882078 TGGAGCAGGTGGAGAAGCTATTGG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21081454 24 -  24206276 GTGAGCAGGTGGAGAGGATACATG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        18761 24 -   1784207 GTGAGCAGGAGGAGAGGCTGTGTG
i colAng1.NW_012117110v1    C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             179953  0 +    584178 C
e canFam3.chr9               55247510  0 +  61074082 C
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e otoGar3.GL873533             428672  0 -  31380117 C
e panPan2.chr15              80423954  0 +  99763055 C
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e rheMac8.chr7               60864696  1 + 169600520 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=6341.000000
s hg38.chr15_KI270850v1_alt    313355 10 +    430880 AACAGGAGGA
s gorGor5.CYUI01015556v1        23644 10 -   1709092 AACAGGAGGA
i gorGor5.CYUI01015556v1    I 243 I 1049
s rheMac8.chr7               60864697  8 + 169600520 TACGGGAG--
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              108391784 10 - 171882078 AACAGGAGAG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21081478 10 -  24206276 AGCAGGATGA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        18785 10 -   1784207 AGCAGGAGGA
i colAng1.NW_012117110v1    C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             179953  0 +    584178 C
e canFam3.chr9               55247510  0 +  61074082 C
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e otoGar3.GL873533             428672  0 -  31380117 C
e panPan2.chr15              80423954  0 +  99763055 C
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=6236.000000
s hg38.chr15_KI270850v1_alt    313365 19 +    430880 GAGGCTGTGTGAACAGGAG
s rheMac8.chr7               60864705  6 + 169600520 -------------CAGGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391794 19 - 171882078 GTGGCAGGAGGAACAGGAG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21081488 19 -  24206276 GAGGATACAGGAGCAGGAG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        18795 19 -   1784207 GAGGCTGTGTGAGCGGGAG
i colAng1.NW_012117110v1    C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             179953  0 +    584178 C
e canFam3.chr9               55247510  0 +  61074082 C
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e otoGar3.GL873533             428672  0 -  31380117 C
e panPan2.chr15              80423954  0 +  99763055 C
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I
e gorGor5.CYUI01015556v1        23654 1049 -   1709092 I

a score=127853.000000
s hg38.chr15_KI270850v1_alt    313384 128 +    430880 AAGCTGCCAGGGCAGGAGAGGCTGCTGGAAGAGGTGGAGAAGCTGTTAGAACAGGAGAGGCGGCAGGAGGAGCAGGAGAGGCTGCTGGAGAGGGAGAGGCTGCTGGAAGAGG---------------------------------------------------------TGGAGAAGCTGTTAGA
s panPan2.chr15              80423954 128 +  99763055 AAGCTGCCAGGGCAGGAGAGGCTGCTGGAAGAGGTGGAGAAGCTGTTAGAACAGGAGAGGCGGCAGGAGGAGCAGGAGAGGCTGCTGGAGAGGGAGAGGCTGCTGGACGAGG---------------------------------------------------------TGGAGAAGCTCCTGGA
i panPan2.chr15             C 0 T 78
s rheMac8.chr7               60864711 128 + 169600520 TGGCTGTCAGAGCAGGAGAGGCTGTTGGAGCAGGTGGAGAAGCTATTGGAACAGGAGAGGTGGCAGGAGGAACAGGAGAGGCTGCTAGACCATGGGAAGCTGCTGGAGCAGG---------------------------------------------------------TGGAGGAACTGTTGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391813 128 - 171882078 AGGCTGCTAGACCATGGGAAGCTGCTGGAGCAGGTGGAGGAACTGTTGGAACAGGAGAGGTTGCGGGAGCAGGATGAGAGACTGCGGGAGCAGGAGAGGCTGCTGGAGCAGG---------------------------------------------------------TGGAGAAGCTTTTGGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21081507 128 -  24206276 TGGCTGCCAGAGCAGGAGAGGCTGCTGGAGGAGGTGAAAAAGCTGTTGGAACAGGAGAGACGGGAGGAGGAGGAGGAGAAGCTGCTAGAGCATGAGAGGCTGCTGAACCAGG---------------------------------------------------------TAGAGAAGCTGCTGGA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        18814 185 -   1784207 AGGCTGCCAGAGCAGGAGAGGCTGCTGGAGCAGGTGGAGAAGCTGTTGGAACAGGAGAGGTGGCAGGAGGAGCAGGAGAGGCTGCTGGACCAGGAGAGGCTGCTGGACCAGGTGGAGGAGCTGCTGAAACAGGAGAGGCTGTGGGAGCAGGAGAGGCTGCTGGAGGAGATGGAGAAACTGTTGGA
i colAng1.NW_012117110v1    C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             179953   0 +    584178 C
e canFam3.chr9               55247510   0 +  61074082 C
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e otoGar3.GL873533             428672   0 -  31380117 C
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I
e gorGor5.CYUI01015556v1        23654 1049 -   1709092 I

a score=23754.000000
s hg38.chr15_KI270850v1_alt    313512 39 +    430880 ACAGGAGAGGCGGCAGGAGGAGCAGGAGAGG------------------CTGCTGGA
s panPan2.chr15              80424004 39 +  99763055 ACAGGAGAGGCGGCAGGAGGAGCAGGAGAGG------------------CTGCTGGA
i panPan2.chr15             T 78 C 0
s rheMac8.chr7               60864839 57 + 169600520 ACAGGAGAGGTTGCGGGAGCAGGATGAGAGACTGCGGGAGCAGGAGAGGCTGCTGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391941 22 - 171882078 ACGGGACAGGCAACAGGAGGAG-----------------------------------
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21081635 39 -  24206276 AGAGGAGAGGCTGCGGGAGCAGGACGAGAGA------------------CTGCTGGA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        18999 39 -   1784207 ACAGCAGAGGCGGCAGGAGGAGCAGAAGAGG------------------CTGCTGGA
i colAng1.NW_012117110v1    C 0 I 115
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             179953  0 +    584178 C
e canFam3.chr9               55247510  0 +  61074082 C
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e otoGar3.GL873533             428672  0 -  31380117 C
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I
e gorGor5.CYUI01015556v1        23654 1049 -   1709092 I

a score=4800.000000
s hg38.chr15_KI270850v1_alt    313551 19 +    430880 ------------------------------------------GAGGGAGAGGCTGCTGGAC
s panPan2.chr15              80424043 19 +  99763055 ------------------------------------------GAGGGAGAGGCTGCTGGAC
i panPan2.chr15             C 0 C 0
s rheMac8.chr7               60864896 58 + 169600520 GCAGGTGGAGAAGCTTTTGGAACGGGACAGGCAACAGGAGGAGCAGAAGAGGCTGCTG---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391963 15 - 171882078 -------------------------------------------CAGAAGAGGCTGCTG---
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21081674 58 -  24206276 GCAGGTGGAGCAGCTTTTGGAACGGGAGAGGCAACAGGAGGAGCAGAAGAGGCTGCTG---
i chlSab2.chr29             C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             179953  0 +    584178 C
e canFam3.chr9               55247510  0 +  61074082 C
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e otoGar3.GL873533             428672  0 -  31380117 C
e colAng1.NW_012117110v1        19038 115 -   1784207 I
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I
e gorGor5.CYUI01015556v1        23654 1049 -   1709092 I

a score=26769.000000
s hg38.chr15_KI270850v1_alt    313570 20 +    430880 GAGGTGGAGGAGCTCCTGGA---
s panPan2.chr15              80424062 20 +  99763055 GAGGTGGAGAAGCTCCTGGA---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        24703 20 -   1709092 GAGCAGGAGAGGCTGCTGGA---
i gorGor5.CYUI01015556v1    I 1049 C 0
s rheMac8.chr7               60864954 20 + 169600520 GAGGAGGAGCAGCTGCTGGA---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391978 20 - 171882078 GAGGAGGAGCAGCTGCTGGA---
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21081732 20 -  24206276 GAGGAGGAGCAGCTGCTGGA---
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        19153 20 -   1784207 GAGGAGGAACAGCTACTGGA---
i colAng1.NW_012117110v1    I 115 C 0
s otoGar3.GL873533             428672 23 -  31380117 CAGGAAGCAGAAATCTGGGGTGA
i otoGar3.GL873533          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             179953  0 +    584178 C
e canFam3.chr9               55247510  0 +  61074082 C
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=20946.000000
s hg38.chr15_KI270850v1_alt    313590 16 +    430880 CGAGGTGGAGGAGCTC
s gorGor5.CYUI01015556v1        24723 16 -   1709092 CGAGGTGGAGGAGCTG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60864974 16 + 169600520 CCAAGTGGAGGAGCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108391998 16 - 171882078 CCAAGTGGAGGAGCTG
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21081752 16 -  24206276 CCAAGTGGAGGAGATG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        19173 16 -   1784207 CCAAGTGGAGGAGCTG
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             428695 14 -  31380117 CCAGGCGGAAGAGC--
i otoGar3.GL873533          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             179953  0 +    584178 C
e canFam3.chr9               55247510  0 +  61074082 C
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e panPan2.chr15              80424082  0 +  99763055 C
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=13496.000000
s hg38.chr15_KI270850v1_alt    313606 5 +    430880 CTGGA
s gorGor5.CYUI01015556v1        24739 5 -   1709092 CTGGA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60864990 5 + 169600520 CTGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108392014 5 - 171882078 CTGGA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21081768 5 -  24206276 CTGGA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        19189 5 -   1784207 CTGGA
i colAng1.NW_012117110v1    C 0 C 0
s canFam3.chr9               55247510 5 +  61074082 CTGGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179953 5 +    584178 CTGGA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e otoGar3.GL873533             428709 0 -  31380117 C
e panPan2.chr15              80424082 0 +  99763055 C
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=253345.000000
s hg38.chr15_KI270850v1_alt    313611 144 +    430880 GCAGGAGAGGCTTCGGTAACAGGATGAGAGGCTGTGGCAGCAGG-AGACTCTGCGGGA-CTGGAGAGGCTGCGGGAGCTGGAGAGGATGCTGG--------------AGCTGGGGTGGG--------AAGCC-----CTGTACGAGCAGCGGGCCGAGCCACGCAGCGGCTTC
s panPan2.chr15              80424082 145 +  99763055 GCAGGAGAGGCTTCGGCAAGAGGATGAGAGGCTGTGGCAGCAGG-AGACTCTgcaggagctggagaggctgcgggagctggagaggatgctgg--------------agctggGGTGGG--------AAGCC-----CTCTACGAGCAGCGGGCCGAGCCACGCAGCGGCTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        24744 145 -   1709092 ACAGGAGAGGCTTCGGCAACAGGATGAGAGGCTGTGGCAGCAGG-AGACTCTgcgggagctggagaggctgcgggagctggagaggatgctgg--------------agccggGGTGGG--------AAGCC-----CTCTACGAGCAGCGGGCCGAGCCACGCAGCGGCTTC
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60864995 145 + 169600520 ACAGGAGAGGCTGCGGGAGCAGGATCAGAGGCTGTGGGAGCAGG-AGACACTGCGGGAGCTGGAGAGGCTGCGGGAGCTGGAGAGGATGCTGG--------------AGCTGGGGTGGG--------AAACC-----CTCTACGAGCAGCAGGCGGAGCCACACAGTAGCTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108392019 145 - 171882078 ACAGGAGAGGCTGCGGGAGCAGGATCAGAGGCTGTGGGAGCAGG-AGACACTGCGGGAGCTGGAGAGGCTGCGGGAGCTGGAGAGGATGCTGG--------------AGCTGGGGTGGG--------AAGCC-----CTCTACGAGCAGCAGGCGGAGCCACACAGTAGCTTC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21081773 145 -  24206276 ACAGGAGAGGCTGCGGGAGCAGGATCAGAGGCTGTGGGAGCATG-AGACACTGCGGGAGCTGGAGAGGCTGCGGGAGCTGGAGAGGATGCTGG--------------AGCTGGGGTGGG--------AAGCC-----CTCTACGAGCAGCAGGCGGAGCCACACAGCAGCTTC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        19194 145 -   1784207 ACAGGACAGGCTGCGGGAGCAGGATCAGAGGCTGTGGGAGCAGG-AGACACTGCGGGAACTGGAGAGGCTGCGGGAGCTGGAGAGGATGCTGG--------------AGCTGGGGTGGG--------AAGCC-----CTCTATGAGCAGTGGGCCCAGCCACACAGCAGCTTC
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             428709 107 -  31380117 GCAAGAAGATTCTGGAGACCATGCAGAATGACCGTGCCACCATC-AG-CATTGCGGTTTCC----------CAGAACCTTGAG------------------------------------------------------CTCAAGAACCAGCTGGCGGAGTTGCAGGATGGCTTT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247515 151 +  61074082 ---------GCTGGAGCGGGCAGCCGAGTGCTGGGGGGAGCAGGCAGA-------------GGAACGCAAGCAGATTCTGGAGAGCATGCAGAGCGATCGCACCACCATCAGCCGTGCGCTCTCCCAGAACCGCGAGCTCAAGGAGCAGCTGGTTGAGCTGCAGAACGGCTTC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             179958 151 +    584178 ---------GCTCGAGAGAGCAGCTGAGCGCTGGGGAGAGCAGG-CGGCCGAGCGGGAA------------CAGATTCTGGAGAGCATGCAGAGCGACCGCACCACCATCAGCCGCGCACTCTCCCAGAACCGCGAGCTCAAGGAGCAACTGGTCGAGTTGCAGAATGGCTTT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1005804 167 +   1024465 I
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=54638.000000
s hg38.chr15_KI270850v1_alt    313755 20 +    430880 GAGGAGCTGGTGCGTTGCCC
s panPan2.chr15              80424227 20 +  99763055 GAGGAGCTGGTGCGTTGCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        24889 19 -   1709092 GAGGAGCTGGTGCGTTG-CC
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60865140 20 + 169600520 GAGGAGCCGGTGGGTTGCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108392164 20 - 171882078 GAGGAGCCGGTGGGTTGCCC
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21081918 20 -  24206276 CAGGAACTGGTGGGTTGCCC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        19339 20 -   1784207 GAGGAGCTGGTGGGTTGCCC
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1005971 19 +   1024465 gaggagctggTGTGTTG-CC
i cebCap1.NW_016107979v1    I 167 C 0
s otoGar3.GL873533             428816 20 -  31380117 ATCAAGCTGGTGTGTGTCCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55247666 20 +  61074082 GTCAAGCTGGTGTGTAGCCC
i canFam3.chr9              C 0 I 45
s dasNov3.JH564958             180109 20 +    584178 ATCAGGCTGGTGCGCAGCGC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=70278.000000
s hg38.chr15_KI270850v1_alt    313775 28 +    430880 CACCTGGGGAGGCTGCCCTCTTCCCTAG-------------------------------------
s panPan2.chr15              80424247 28 +  99763055 CACCTGGGGAGGCTGCCCTCTTCcctag-------------------------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        24908 27 -   1709092 CACCT-GGGAGGCTGCCCTCTTCcctag-------------------------------------
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60865160 28 + 169600520 CACCTGGGGAGCCTGCCCTCTTCcctag-------------------------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108392184 28 - 171882078 CACCTGGGGAGCCTGCCCTCTTCcctag-------------------------------------
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21081938 28 -  24206276 CACCTGGGGAGCCTGCCCTCTTCCCTAG-------------------------------------
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        19359 28 -   1784207 CACCTGGGGAGCCTGCCCTCTTCcctag-------------------------------------
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1005990 28 +   1024465 CACCTGGGGAGCCTGCCCTCCTTCCcat-------------------------------------
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             428836 28 -  31380117 CGCCTAACTAGCCTGCCCTCCTCACTGG-------------------------------------
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958             180129 64 +    584178 -CCCTggctaacctgccctcattcctcacttgccatgtcctttggtgtagaataaggcacttgaa
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e canFam3.chr9               55247686 45 +  61074082 I
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=839388.000000
s hg38.chr15_KI270850v1_alt    313803 277 +    430880 CCCTCAAGgcctttgtttccccacctgtaaaatggggCA--TTGTAGCCTTCACATG---AAATGGTACTTCTAAAGGCA-TCTGTGAGCC--AGAGCCCTGCTCTG--ATGGCTGTGGGAGAGA----GGGGATA-TTTTTCTAACCTGCCTCCACCCTTCCCGGTGCCATGGGAGGC-GACACTAAGTTCTGGGGTCTCCAGTTTTAGTGGGTGGCCACTGATTGC-TTCTCTCTGTCCAGAACAACGAGAACAAG---------AGCACACTGCAGTTGGAGCAGCAAGT---A---------------AAGGAGCTG------------
s panPan2.chr15              80424275 278 +  99763055 ccctcaaggcctttgtttccccacctgtaaaatggggCA--TTGTAGCCTTCACATG---AAATGGTACTTCTAAAGGCA-TCTGTGAGCC--AGAGCCCTGCTCTG--ATGGCTGTGGGAGAGA----GGGGATA-TTTTTCTAACCTGCCTCCACCCTTCCCGGTGCCATGGGAGGCAGACACTAAGTTCTGGGGTCTCCAGTTTTAGTGGGTGGCCACTGATTGC-TTCTCTCTGTCCAGAACAACGAGAACAAG---------AGCACACTGCAGCCGGAGCAGCAAGT---A---------------AAGGAGCTG------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        24935 275 -   1709092 ccctcaagacctttgtttccccacctgtaaaat-gggca--tTGTAGCCTTCACATG---AAATGGTACTTCTAAAGGCA-TCTGTGAGCC--AGAGCCCTGCTCTG--ATGGCTGTGGGAGAGA----GGGGATA--TTTTCTAACCTGCCTCCACCCTTCCCGGTGCCATGGGAGGCAGACACTAAGTTCTGGGGTCTCCAG-TTTAGTGGGTGGCCACTGATTGC-TTCTCTCTGTCCAGAACAACGAGAACAAG---------AGCACACTGCAGGTGGAGCAGAAAGC---A---------------AAGGAGCTG------------
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60865188 279 + 169600520 ccctccaggcctttgtttccccacctgtaaaatggggCA--TTGTAGTCCTCACATG---AAATGGTACTTCTAAAGGCA-CCTGTGAGCC--AGAGCCCTGCTCTG--ATGGCTGTGGGAGAGA----GGGGATGATTTTTCTAACCTGCCTCCACCCTTCCCGGTGCCATGGCAGGCAGACACCAAGTTCTGGGGTCTCCAGCTATAGCGGGTGGCCAATGATTGC-TTCTCTCTGTCCAGAACAATGAGAACAAG---------AGCGCACTGCAGTTGGAGCCTCAAGT---A---------------AAGGAGCTG------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108392212 279 - 171882078 ccctccaggcctttgtttccccacctgtaaaatggggCA--TTGTAGTCCTCACATG---AAATGGTACTTCTAAAGGCA-CCTGTGAGCC--AGAGCCCTGCTCTG--ATGGCTGTGGGAGAGA----GGGGATGATTTTTCTAACCTGCCTCCACCCTTCCCGGTGCCATGGCAGGCAGACACCAAGTTCTGGGGTCTCCAGCTATAGCGGGTGGCCAATGATTGC-TTCTCTCTGTCCAGAACAATGAGAACAAG---------AGCGCACTGCAGTTGGAGCCTCAAGT---A---------------AAGGAGCTG------------
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21081966 278 -  24206276 ccctccaggcctttgtttccccacctgtaaaatggggCA--TTGTAGCCCTCACATG---AAATGGTACTTCTAAAGGCA-CCTGTGAGCC--AGAGCCCTGCTCTG--ATGGCTGTGGGAGAGA-----GGGATGATTTTTCTAACCTGCTTCCACCCTTCGCGGTGCCATGGCAGGCAGACACCAAATTCTAGGGTCTCCAGCTATAGTGGGTGGCCAATGATTGC-TTCTCTCTGTCCAGAACAATGAGAACAAG---------AGCGCACTGCAGTTGGAGCCGCAAGT---A---------------AAGGAGCTG------------
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        19387 279 -   1784207 ccctccaggcctgtgtttccccacctgtaaaatggggCA--TTGTAGCCCTCACATG---AAATGGTACTTCTAAAGGTA-CCTGTGAGCC--AGAGCCCTGTTCTG--ATGGCTGTGGGAGAGA----GGGGATGATTTTTCTAACCTGCCTCCACCCTTCCCGGTGCCACGGCAGGCAGACACGAAGTTCTGGGGTCTCCAGCTATAGTGGGTGGCCACTGATTGC-TTCTGTCTGTCCAGAACAATGAGAACAAG---------AGCGCACTACAGTTGGAGCAGCAAGT---A---------------AAGGAGCTG------------
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1006018 266 +   1024465 ccctccggggctttgttttcccacctgtaaaatggggga--gtgt---------atg---aaatggggcttctaaagACA-CCTGTGAGCC--AGAGCCCTGCTCTG--ATGGCTGTGGGAGAAA----GGAGACAATTTTTCTAACC----TCCACCCTTCCCGGTGCCATGGGAGGCAGTCACAAAGTTCTGGGGTCTCCAGCTGGAGTGGGTGGCCACTGATTGC-TTCTCTCTGTACAGAAGAACGAGAACAGG---------AGCACACTGCATTTGGACCAGGAAGG---A---------------AAGGAGCTG------------
i cebCap1.NW_016107979v1    C 0 I 53
s otoGar3.GL873533             428864 261 -  31380117 CCCTCTGGGACTTTGATTTCCCACCTGTAAAACTGGGTG--GGCTAGAGCTCATGTG---AAATGGTA---------------------CC--AGAGTCCCACTCCAGTGTGTCTGTGGGGAG----------------TTTCCAACCTGCCTCCACCCATCCCTGCACCTTGGGAGGTGAGCATCAAGTTCTGGAGTCTCCAGCT-------------GCTGATTACTTTTTCTCTGTCCAGAGCAATGACAATATGGAAATTTCCAATGCACTACAGTCTGAGCAGCATGT---GAAGAAAGAACTGGCTAAGAAGCTG------------
i otoGar3.GL873533          C 0 I 12
s canFam3.chr9               55247731 276 +  61074082 ccctctaggcctttgtctccccacgtgtaaatgggggaAGGGTGTATGCACCCAATGTGAAAATGGTGCCCTTGAAGGCACCCTGTGAGCCGGAGAGCCCTGCTGAG--ATGAGTGGGGCAGAGGTGGTGAGGACA----------CCTGCCTCCACTCTTCCCTGCACTGTGGGAGGTAGACTCCATGTTCTGGGGT-----------------GGCCACTGACTCC-TCTTCTCTCTCCAGTCCAACGAGAACATGGAGATTACTACCGCACTGCAGTCGGAGCAGCATGTCAAG---------------AAGGAGCTG------------
i canFam3.chr9              I 45 I 24
s dasNov3.JH564958             180193 299 +    584178 ccctctgggccttggttttcccacctataaagtggggTG--TGCCGACCTCCAGGTG---CAGTGGTGCC-----------CATGTG------AGATCCATGCTCAG--ATGTGAGTGGG-GTGA----GGGGGCGTATTTTCCAACTTGTCTTCACCCTTAACTGAGCTGTGG-AGGGGGACACCAAGTTCTGGGGTCTTTGGCTGCATTGGGTAGTTGCTGATTAC-TTCTCTCTGTTCAGAGCAATGAGAATATGGAGATGACCAGTGCCCTGCAGTCAGAACAGTATGT---TAAGAAAGAGCTGGCCAAGAAGCTGGAACAGCTGCAG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=126957.000000
s hg38.chr15_KI270850v1_alt    314080 54 +    430880 GAGAAGTCGGGTGAGCTGAAAGAGACTGTAA-----CCTCCGACCCATCCAAGAAGATG-
s panPan2.chr15              80424553 54 +  99763055 AAGAAGTCGGGTGAGCTGAAAGAGACTGTAA-----CCTCCGACCCATCCAAGAAGATG-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        25210 54 -   1709092 AAGAAATCAGGTGAGCTGAAAGAGACTGTAA-----CCTCCGACCCATCCAAGAAGATC-
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60865467 54 + 169600520 AAGACGCTGGGCGAGCTGAAAGACACGGTAA-----CCTCTGACCCATCCAAGAAGGGC-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108392491 54 - 171882078 AAGACGCTGGGCGAGCTGAAAGACACGGTAA-----CCTCTGACCCATCCAAGAAGGGC-
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21082244 54 -  24206276 AAAACGCTGGGCGAGCTGAAAGACACGGTAA-----CCTCTGACCCATCCAAGAAGGGA-
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        19666 54 -   1784207 AAGATGCTGGGTGAGCTGAAAGACACGGTAA-----CCTCTGACCCATCCAAGAAGGGC-
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             429137 51 -  31380117 GAAGAGCTGGGCGAGATGAAGGAGACGGTAA-----CCAGTGTTCCATCTGAGAAA----
i otoGar3.GL873533          I 12 C 0
s canFam3.chr9               55248031 59 +  61074082 GAGAAGCTGGGAGAGCTAAAGGAGATGGTAACTTACCCCCCACACCAGCTGAGGAAGCC-
i canFam3.chr9              I 24 C 0
s dasNov3.JH564958             180492 55 +    584178 GAAAAGCTGGCAGAGCTCAAAGAGACGGTAA-----CCCCTGTCCCACTGGCAAAGGGCT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1006284 53 +   1024465 I
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        66882 388 +   6271500 I
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=4895.000000
s hg38.chr15_KI270850v1_alt    314134 2 +    430880 T-G
s panPan2.chr15              80424607 2 +  99763055 T-G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        25264 3 -   1709092 TGG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60865521 2 + 169600520 T-G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108392545 2 - 171882078 T-G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        67270 2 +   6271500 T-G
i macNem1.NW_012011056v1    I 388 C 0
s chlSab2.chr29              21082298 2 -  24206276 T-G
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        19720 2 -   1784207 T-G
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1006337 2 +   1024465 T-G
i cebCap1.NW_016107979v1    I 53 C 0
s canFam3.chr9               55248090 2 +  61074082 T-G
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             180547 2 +    584178 T-A
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e otoGar3.GL873533             429188 0 -  31380117 C
e manLeu1.NW_012105520v1       405969 212 -   1458659 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=867308.000000
s hg38.chr15_KI270850v1_alt    314136 221 +    430880 GGAGGCGGGC--ACCAGCCTCTGGG-----------------------------------------------GAGGGGAGGTGCCAGGCC--------ACAG-----GCAGCTGCAGCCT----GGGGA--CAGGTGACCCCAGCACCCTCCGGGGCAGTCCTAT------GACTGTTTCTTGCTTCCTGCCCTCTGACTTTTAGAGGTGGGTAGCCCTGGGGTCCTCCCAGGTCTGGACATCATCATCCCAGCTAGAGGCATGGAGCCCCCCAATCACAGAGGA--AGAGAC--AGTG
s panPan2.chr15              80424609 221 +  99763055 GGAGGCGGGC--ACCAGCCTCTGGG-----------------------------------------------GAGGGGAGGTGCCAGGCC--------ACAG-----GCAGCTGCAGCCT----GGGGA--CAGGTGACCCCAGCACCCTCCGGGGCAGTCCTAT------GACTGTTTCTTGCTTCCTGCCCTCTGACTTTTAGAGGTGGGTAGCCCTGGGGTCCTCCCAGGTCTGGACATCATCATCCCAGCTAGAGGCATGGAGCCCCCCAATCACAGAGGA--AGAGAC--AGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        25267 220 -   1709092 GGAGGCGGGC--ACCAGCCTCTGGG-----------------------------------------------GAGGGGAGGTGCCAGGCC--------ACGG-----GCAGCTGCAGCCT----GGGGA--CAGGTGACCCCAGCACCCTCCAGGGCAGTCCTAT------GACTGTTTCTTGCTTCCTGCCCTCTGACTTTTAGAGGTGTGTAGCCCTGGGGTCCTCCCAGGTCTGGACATCATCATCCCAGCTAGAGGCATGGAG-CCCCCAATCACAGAGGA--ACAGAC--AGTG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60865523 218 + 169600520 GGAGGCGGGC--ACCAGCCTCTGGG-----------------------------------------------GAAGGGAGGCGCCAGGCC--------AGAG-----GCAGCTGCAACCT----GGGGG--CAGGTGACCCCAGCACTCTCCAGGGCAGTGCTAT------TGCTGTTTCTTGCATCTTTCCCTCTGACTTTTAGAGGTGGGGAGCCCTGGGCTCCCCCCAGGTCTGGATATC---ATCCCAGCTAGAGGCATGGAACCCCCCAGTCACAGGGGA--AGAGAC--AGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108392547 218 - 171882078 GGAGGCGGGC--ACCAGCCTCTGGG-----------------------------------------------GAAGGGAGGCGCCAGGCC--------AGAG-----GCAGCTGCAACCT----GGGGG--CAGGTGACCCCAGCACTCTCCAGGGCAGTGCTAT------TGCTGTTTCTTGCATCTTTCCCTCTGACTTTTAGAGGTGGGGAGCCCTGGGCTCCCCCCAGGTCTGGATATC---ATCCCAGCTAGAGGCATGGAGCCCCCCAGTCACAGGGGA--AGAGac--agtg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        67272 222 +   6271500 GGAGGCAGGC--ACCAGCCTCTGGG-----------------------------------------------GAACGGAGGTGCGAGGCC--------AGAG-----ACAGCTCCAGCCT---AGGGGA--CAGGTGACCACAGCACCCTCCAGGGCAGTGCTGT------AACTGTTTCTTGCTTCCTGCCCTCTGAATTTTAGAGGTGGGTAGCCCGGGGCTCCTCCCAGGTCTGAACATCATTATCCCAGCTAGAGGCATGGAGTTCCCCAATCACAGGGAA--AGAGAC--AATG
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              21082300 211 -  24206276 GGAGGCGGGC--ACCAGCCTCTGGG-----------------------------------------------GAAAGGAGGGGCCAGGCC--------AGAG-----GCAGCTGCATCCT----GTGAG--CAGGTGACC----------CTGGGGCAGTCCTAT------TACTGTTTCTTGCATCTTCCCCTCTGACTTTTAGAGGTGGGGAGCCCTGGGCTCCCCCCAGTTCTGGATATCATCATCCCAGCTAGAGGCATGGAGCCCCCCAGTCACAGTGGA--AGAGAC--AGTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       406181 222 -   1458659 GGAGGCGGGC--ACCAGTCTCTGGG-----------------------------------------------GAAGGGAGGTGTGAGGCC--------AGAG-----GCAGCTCCAGCCT----GGGGG-ACAGGTGACCCCAGCAGCCTCCAGGGCAGTGCTGT------GACTGTTTCTTGCTTCTTGCCCTGCGAATTTTAGAGGTGGGTAGCCCTGGATTCCTCCCAGGTCTGAACGTCATCATCCCAGCTAGAGGCGTGGAGCTCCCCAGTCATAAGGAA--AGAGAC--AGTA
i manLeu1.NW_012105520v1    I 212 C 0
s colAng1.NW_012117110v1        19722 221 -   1784207 GGAGGCGGGC--ACCAGCCTCTGGG-----------------------------------------------AGGGGGAGGTACCAGGTC--------AGAG-----GCAGCTGCAGCCT----GGGGG--CAGGTGACCCCAGCACCCTCCAGGGCAGTCCTAT------GACTCTTTCTTGCTTCCTGCCCTCTGACGTTTAGAGGTGGGGAGCCCTGGGCTCCCCCCAGGTCTGGATATCATCATCCCAGCTAGAGGCATGGAGCCCCCCAATCATAGGGGA--AGAGAC--AGTG
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1006339 222 +   1024465 GGAGGCAGGC--ACTGGCCTCTGGG-----------------------------------------------GAGGGGAGGTGCAAGGCC--------AAAG-----GCAGCTCCACCCT----GGGGG--CAGGTGACCCCA-CACCCTCCAGGGCGGTCCTGT------GACTGTTTCTTCCTTCCTGCCCTCTGACTTTTAGAGGCGGGTAACCCTGGGCTCCTCCCAGGTCTGGACAGCATCATCCCAGCTCGAGGCATGGAGACCCCCAGTCACAGGGCAAGAGAGAC--AGTG
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             429188 184 -  31380117 ------------------------G-----------------------------------------------GAGGGGCGGTGCCAGGCC--------AGGGCAGACGCAGCTCTAGACT----GAGGG-ATACATGACCTCAGAGACCTGCAGAACAGGTCTGT------GAC---TTATCACTCCCT--------------------GGGTAGTCCTGGGTTTCTCCGAGGTCTGGAAATGATCATCCTAGCTAGAGGTACTGAGCACCCCTATCACATCATG--ATCACCTGAGTG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55248092 218 +  61074082 GAGGACAAACCTACCTGCTCGGAGG-----------------------------------------------GTGGGAGGTTGCCCAGGA--------TGGT-----GCAGCTCCAGCCTGTGGGGGGA--CACCTGACTCCAGAGTCCTTCCAATCCTGCCTGTGGTGCAGGCCCCTTGTCACTCCCAGCTGTCTGACTCTACAGAGTGGGTATCCCTGGG------------CTGAAGGTCCTCGTCCTGGCTAGAGAGCTCAGGCCCCTAACG---Aggtca--agagat--ggtg
i canFam3.chr9              C 0 I 297
s dasNov3.JH564958             180549 258 +    584178 GGAGACAGGC--ACAATCCTCTGGGCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTGCAACAGGGATGAAATTGGATTCTAGGCCCAGGTCAGAGAG-----CCAGCTCTGGCCT----GGGAGGACAGGTGACCCTAGAGTCCTGC----CAAGCCTGT------GACTATTCCTTACTCCCTGCTCTCTGACTCTTAGA-GTAGGTAGCCTTGGG------------CCATAGGTCATTTTCCTGGCTTGAGGCATTGAG---CCCAATTATAGGGAA--AGAGAT--AGTG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=42031.000000
s hg38.chr15_KI270850v1_alt    314357 10 +    430880 ---GTATAA------GAGG
s panPan2.chr15              80424830 10 +  99763055 ---GTATAA------GAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        25487 10 -   1709092 ---GTATAA------GAGG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60865741 10 + 169600520 ---GTATAA------GAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108392765 10 - 171882078 ---gtataa------gagg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        67494 10 +   6271500 ---GTATAA------GAGG
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              21082511 10 -  24206276 ---GTATAA------GAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       406403 10 -   1458659 ---TTATAA------GAGC
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        19943 10 -   1784207 ---GTATAA------GAGG
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1006561 10 +   1024465 ---GTGTGA------GAGG
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             429372 16 -  31380117 ---GTATGATTAAGTGAGG
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958             180807 13 +    584178 ATAGGATGG------GAGG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e canFam3.chr9               55248310 297 +  61074082 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=22680.000000
s hg38.chr15_KI270850v1_alt    314367 6 +    430880 CTCCTT
s panPan2.chr15              80424840 6 +  99763055 CTCCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        25497 6 -   1709092 CTCCTT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60865751 6 + 169600520 CTCCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108392775 6 - 171882078 ctcctt
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21082521 6 -  24206276 CTCCTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       406413 6 -   1458659 CTCCTT
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        19953 6 -   1784207 CTCCTT
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1006571 6 +   1024465 CTCTTT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             429388 6 -  31380117 ATCCTT
i otoGar3.GL873533          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             180820 0 +    584178 C
e canFam3.chr9               55248310 297 +  61074082 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        67504 0 +   6271500 C
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=291886.000000
s hg38.chr15_KI270850v1_alt    314373 134 +    430880 ------------------------------------------------------AT---gtcgggtgtggtggctcacgcctgcaatcccagcactttgggaggctgaggcaggacaatcacttgaggtcaggagtttgagaccaacatggccaacatggtgaaagctcatctctactaaaattaaaaaaa
s panPan2.chr15              80424846 134 +  99763055 ------------------------------------------------------AT---gtcgggtgtggtggctcacgcctgcaatcccagcactttgggagtctgaggcaggacaatcacttgaggtcaggagtttgagaccaacatggccaacatggtgaaagctcatctctactaaacttaaaaata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        25503 134 -   1709092 ------------------------------------------------------AT---gtcaggtgtggtggctcgtgcctgcaatcccagcactttgggagtctgaggcaggacaatcacttgaggtcaggagtttgagaccaacatggccaacatggtgaaagctcatctctactaaaattaaaaata
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60865757 132 + 169600520 ------------------------------------------------------AT---GTTgggtgtggtggctgacgcctgtagtcccaccactttgggaggctgaggcaggagaatcacttcaggtcaggagtttgagaccagcctggttgacatggcaaaacctcatctctactaaaatttcaa--a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108392781 132 - 171882078 ------------------------------------------------------at---gttgggtgtggtggctgacgcctgtagtcccaccactttgggaggctgaggcaggagaatcacttcaggtcaggagtttgagaccagcctggttgacatggcaaaacctcatctctactaaaatttcaa--a
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21082527 131 -  24206276 ------------------------------------------------------AT---GTTgggtgtggtggctaacgcctgtagt-ccaccactttgggaggccgaagcaggagaatcacttgaggtcaggagtttgagaccagcctgactgacatggcaaaacctcatctctactaaaatttcaa--a
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        19959 132 -   1784207 ------------------------------------------------------AT---GTTgggtgtggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggagaatcacttgaggttaggagcttgagaccagccttgccaacatggtgaaacctcatctctactaaaatttcaa--a
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1006577 115 +   1024465 ------------------------------------------------------AT---gctgggtgtggtggctcacacctgtgatcccagcaatttgggaggctgaggcag--------ct-----------gtttgagatcagcctggccaacatgacaaaacctcatctctactaaaattacaacaa
i cebCap1.NW_016107979v1    C 0 I 12
s otoGar3.GL873533             429394 191 -  31380117 GGATTTAGACTGGATTCTGGTCTCGGCTCCACTGGTTGTTTTCAAATACTTAACATCTggctggccacagtggcttacccctgtcatcccagcactttgggagactgagacaggacgattgcttgaagctaggaatttaagaacagcatgggcaatgtagcaagatataatctctacaaaaatttgaaaaa
i otoGar3.GL873533          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             180820   0 +    584178 C
e canFam3.chr9               55248310 297 +  61074082 I
e manLeu1.NW_012105520v1       406419   0 -   1458659 C
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        67504   0 +   6271500 C
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=6346.000000
s hg38.chr15_KI270850v1_alt    314507 12 +    430880 ataataataat---t
s panPan2.chr15              80424980 15 +  99763055 ataataataataatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        25637 12 -   1709092 ataataataat---t
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60865889 12 + 169600520 ataaaaccaat---t
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108392913 12 - 171882078 aaaaaaccaat---t
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21082658 12 -  24206276 aaaaatataat---t
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        20091 11 -   1784207 ataaaa-taat---t
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             429585  2 -  31380117 ----------t---t
i otoGar3.GL873533          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             180820  0 +    584178 C
e canFam3.chr9               55248310 297 +  61074082 I
e cebCap1.NW_016107979v1      1006692 12 +   1024465 I
e manLeu1.NW_012105520v1       406419  0 -   1458659 C
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        67504  0 +   6271500 C
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=2826.000000
s hg38.chr15_KI270850v1_alt    314519 2 +    430880 ag
s panPan2.chr15              80424995 2 +  99763055 ag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        25649 2 -   1709092 ag
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60865901 2 + 169600520 ac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108392925 2 - 171882078 ac
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21082670 2 -  24206276 ac
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        20102 2 -   1784207 ag
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1006704 2 +   1024465 ag
i cebCap1.NW_016107979v1    I 12 C 0
s otoGar3.GL873533             429587 2 -  31380117 ag
i otoGar3.GL873533          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             180820 0 +    584178 C
e canFam3.chr9               55248310 297 +  61074082 I
e manLeu1.NW_012105520v1       406419 0 -   1458659 C
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        67504 0 +   6271500 C
e saiBol1.JH378108           50447050 5938 +  54856640 I

a score=360204.000000
s hg38.chr15_KI270850v1_alt    314521 113 +    430880 ccgggcctggtggtgcatgcctgtaatcccagctactcaggaggctgagacacgagaatcacttgtgcccgggaggtgaaggttgcagtgagctgagattgcaccactgcact
s panPan2.chr15              80424997 113 +  99763055 ccgggcctggtggtgcatgcctgtaatcccagctactcgggaggctgagacacgagaatcacttgagcccgggaggtgaaggttgcagtgagctgagattgcaccactgcact
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        25651 113 -   1709092 ctgggcctggtggtgcatgcctgtaatcccagctactcaggaggctgagacatgagaatcacttgagcccgggaggtgaaggttgcagtgagctgagattgcaccactgcact
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60865903 113 + 169600520 ctaggcctggtggtgcatgcctgtcatcccagctactcaggaggctgagatacgagaatcatttgagcctgggaggtagaggttgcagtgagctgagatcacaccaccggact
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108392927 113 - 171882078 ctaggcctggtggtgcatgcctgtcatcccagctactcaggaggctgagatacgagaatcatttgagcctgggaggtagaggttgcagtgagctgagatcgcaccactggact
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21082672 113 -  24206276 ctaggcctggtggtgcatgcctgtcatcccagctactcaggaggctgacacacgagaatcatttgagcctgggaggtagaggttgcagtgagctgagatcgcatcactggact
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        20104 113 -   1784207 ccaggcctggtggtgcgtgcctgtaatcccagctactcaggaggctgagacatgagaatcacttgagtccaggaggtggaggttgcagtgagctgagatcgcaccattgcact
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50452988 112 +  54856640 ctaggcatggtggcacatgcctgtaatcccagctactcggtaggctga-gcacaggaatcccttgagcccaggaggtgaaggctgcagtgagcggagattgcaccactgccct
i saiBol1.JH378108          I 5938 C 0
s cebCap1.NW_016107979v1      1006706 111 +   1024465 ctgggcgtggtggcaca--ccagtaatcacagctactcagggggctgaggcatgagcatcccttgagcccgggagctggaggttgcggtgagctgagtttgcaccaggactct
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             429589 113 -  31380117 ccagccgtggtggcccatgactgtagtcccagctactcaggaggctgaggctggaggttcacttgagcccaggagtttgaggttgaagtgagctatggttgagccattgcact
i otoGar3.GL873533          C 0 I 445
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             180820   0 +    584178 C
e canFam3.chr9               55248310 297 +  61074082 I
e manLeu1.NW_012105520v1       406419   0 -   1458659 C
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        67504   0 +   6271500 C

a score=118678.000000
s hg38.chr15_KI270850v1_alt    314634 61 +    430880 gcagcctgggacacagagtgaca--ctctctcaaaacaaaacaaaacagaa-------aaacaaa---aaaGA
s panPan2.chr15              80425110 61 +  99763055 ccagcctgggacacagagtgaca--ctctctcaaaacaaaacaaaacagaa-------aaacaaa---aaaGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        25764 61 -   1709092 gcagcctgggacacagagtgaca--ctctctcaaaacaaaacaaaacagaa-------aaacaaa---aaaGA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60866016 61 + 169600520 ccagcctgggacacagagtgaca--ctgtctcaaaacaaaacaaaaCGCTA-------AAACCAA---AAAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108393040 61 - 171882078 ccagcctgggacacagagtgaca--ctgtctcaaaacaaaacaaaatgcaa-------aaaccaa---aaaga
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21082785 56 -  24206276 ccagcccgggacacagagtgaca--ctgtctcaaaacaaaac-----gcaa-------aaaccaa---aaaGA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        20217 61 -   1784207 ccagcctgggacacagagtcaca--ctgtctcaaaacaaaacaaaacgcaa-------aaaccaa---aaaga
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50453100 41 +  54856640 ccag---agcatccagagtgatactctgtctc--------------------------acacaaa---aaaGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1006817 73 +   1024465 ccagcctgggccacagagtgacactctgtctcaaaacaaaagaaaTCAAATCAAAGCAAAACAAAACGAAAGT
i cebCap1.NW_016107979v1    C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             180820  0 +    584178 C
e canFam3.chr9               55248310 297 +  61074082 I
e otoGar3.GL873533             429702 445 -  31380117 I
e manLeu1.NW_012105520v1       406419  0 -   1458659 C
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e macNem1.NW_012011056v1        67504  0 +   6271500 C

a score=30205.000000
s hg38.chr15_KI270850v1_alt    314695 6 +    430880 CTCCTT
s panPan2.chr15              80425171 6 +  99763055 CTCCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        25825 6 -   1709092 CTCCTT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60866077 6 + 169600520 CTCCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108393101 6 - 171882078 ctcctt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        67504 6 +   6271500 CTCCTT
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              21082841 6 -  24206276 CTCCTT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        20278 6 -   1784207 ctcctt
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50453141 6 +  54856640 CTTCTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1006890 6 +   1024465 CTCCTT
i cebCap1.NW_016107979v1    C 0 C 0
s dasNov3.JH564958             180820 6 +    584178 CTCCTT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e canFam3.chr9               55248310 297 +  61074082 I
e otoGar3.GL873533             429702 445 -  31380117 I
e manLeu1.NW_012105520v1       406419 0 -   1458659 C
e cerAty1.NW_012002657v1          249 2260 -   1987038 M

a score=249800.000000
s hg38.chr15_KI270850v1_alt    314701 61 +    430880 AGATTCAAAC-TGGATTCCGGCCTCGGTTCCACTGGTCATAATTCAACTactttgcatctct
s panPan2.chr15              80425177 61 +  99763055 AGATTCAAAC-TGGATTCCGGCCTCGGTTCCACTGGTCATAATTCAACTactttgcatctct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        25831 61 -   1709092 AGATTCAAAC-TGGATTCCGGCCTTGGTTCCACTGGTCATAATTCAACTactttgcatctct
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60866083 61 + 169600520 AGACTCAAAC-TGGTTTCCGGACTCAGTTCTACTGGTTATCATTCAACTACTTTGCATTTCT
i rheMac8.chr7              C 0 I 305
s macFas5.chr7              108393107 61 - 171882078 agactcaaac-tggtttccagactcggttctactggttatcattcaactactttgcatttct
i macFas5.chr7              C 0 I 306
s macNem1.NW_012011056v1        67510 61 +   6271500 AGATTGAAAc-tgaattccagcctcagctccactgctcaccattgaactaccttgcatctcc
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              21082847 61 -  24206276 AGACTCAAAC-TGGTTTCCGGACTCGGTTCTACTGGTTATCATTCAACTactttgcattttt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       406419 61 -   1458659 AGATTCAacc-tgaattccaacctcggctccactgctcaccattgaactaccttgcatctct
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        20284 61 -   1784207 agactcaaac-tggtttccggcctcggttctactggttatcattcaactactttgcatctct
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50453147 61 +  54856640 AGACTCAAAC-TGGATTCTGGCGTCGCTTCCGCTCGTCACCACTGAACTTctttacatctct
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1006896 61 +   1024465 AGATCCAAAc-tggattccagccttgattccactggtcaccattcgactactttgcatctct
i cebCap1.NW_016107979v1    C 0 C 0
s dasNov3.JH564958             180826 53 +    584178 GGATTCCAACTTGAATTCTCCTTTTGGCTGCACTGGTCACTATTCA---------CATCTCT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e canFam3.chr9               55248310 297 +  61074082 I
e otoGar3.GL873533             429702 445 -  31380117 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M

a score=199358.000000
s hg38.chr15_KI270850v1_alt    314762 43 +    430880 aagtctctgtttctttaacttcaaaaggaagttagccttttcc-
s panPan2.chr15              80425238 43 +  99763055 aagtctctgtttctttaacttcaaaaggaagttagccttttcc-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        25892 43 -   1709092 aagtctctgtttctttaacttcaaaaggaagttagccttttcc-
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60866449 43 + 169600520 Aagtctctgtttctttaacttcaaaaggaagttagcgttttcc-
i rheMac8.chr7              I 305 C 0
s macFas5.chr7              108393474 43 - 171882078 aagtctctgtttctttaacttcaaaaggaagttagcgttttcc-
i macFas5.chr7              I 306 C 0
s macNem1.NW_012011056v1        67571 43 +   6271500 aagtctcggtttctttaacttcaaaacgaagttagcattttcc-
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              21082908 43 -  24206276 aagtgtctgtttctttaacttcaaatggaagttagcattttcc-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       406480 43 -   1458659 aagtcttggtttctttcacttaaaaaggaagtgagctttttcc-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        20345 41 -   1784207 aagtct--gtttctttaacttcaaaaggaagttaacattttcc-
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50453208 43 +  54856640 aagcctctgtttctttcatttcaaaaggaagttagtattttcc-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1006957 43 +   1024465 cagtctctgtttctttaacttccaaaggaagttagcattttcc-
i cebCap1.NW_016107979v1    C 0 C 0
s dasNov3.JH564958             180879 44 +    584178 AAGCATCATTTTCTTTAACTTGACAAGGAGATTAGCATTTTTCC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e canFam3.chr9               55248310 297 +  61074082 I
e otoGar3.GL873533             429702 445 -  31380117 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M

a score=496720.000000
s hg38.chr15_KI270850v1_alt    314805 124 +    430880 ttgcagaggtgctgaggattaaatgagata-atacgtggaaa-cattaggcatgta--gcacacttagc-----------agatggtGGTTGGCTCCGCCTGCTTTTCCACCAGTCTGTGGCCTACAGTTTACAT----GCTG
s panPan2.chr15              80425281 124 +  99763055 ttgcagaggtgctgaggattaaatgagata-atacgtggaaa-cattaggcatgta--gcacacttagc-----------agatggtGGTTGGCTCCGCCTGCTTTTCCACCAGTCTGTGGCCTACAGTTTAAAT----GCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        25935 124 -   1709092 ttgcagaggtgctgaggattaaatgagata-atacgtggaaa-cattaggcatgta--gcacacttagc-----------agatggtCGTTGGCTCCGCCTGCTTTTCCACCAGTCTGTGGCCTGCAGTTTAAAT----GCTG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60866492 127 + 169600520 ttgcagaggtgctgaggattaaatgagata-atacgtggaaa-cattaggcatgta--gtacacttagc-----------aGATGCTGGTTGGCTCCCCCCG-TTTTCCACTAGTCTGTGGTCTACAGTTTAAATTTTAGACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108393517 123 - 171882078 ttgcagaggtgctgaggattaaatgagata-atacgtggaaa-cattaggcatgta--gtacacttagc-----------agatgctggttGGCTCCCCCCG-TTTTCCACTAGTCTGTGGTCTACAGTTTAAAT----GACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        67614 124 +   6271500 ttgcagaggtgctgaggattaaatgagata-atacgtggaaa-cattaggcatgta--gtgcacttagc-----------agatggtGTTTGGCTCCCTCTGCTTTTCCACCAGTCTGTGGCCTACAGTTTAAAT----GGTA
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              21082951 120 -  24206276 ttgtaga-ggtctgaggattaaatgagata-atatgtggaaa-cattaggcatgta--gtacacttggc-----------aGATGGCGGTTGGCTCCCCG---TTTTCCACCAGTCTGTGGCCTACAGTTTAAAT----GATA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       406523 123 -   1458659 ttgcagagggtttgaggattaaatgagata-ataggtggaaa-cattaggcatgta--gcacaCTCAGC-----------AGATGGTGGTTGGCTCCCTTTGCTTTGCCACCAGTCTGTGGCCTACAGTTTAAAT----GGT-
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        20386 135 -   1784207 ttgcagaggtgctgaggattaaatgagata-atacatggaaa-cattaggcatgta--gcacacttagcttagcacacTTAGATGGTGGTTGGCTCCCTCTGCTTTTCCACCAGTCTGGGGCCTACAGTTTAAAT----GGTG
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50453251 125 +  54856640 ttgtggaggtgctgagcattaaatgtgatg-ctatgtggaaagcattaggtgcgca--gcacacTTAGC-----------AGACGGTGGTTGGCTCCCTCTGCTTTTCCACCAGTCTGTGGCCTGTAGTTTAAAT----GGTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1007000 124 +   1024465 ttgcgtgggtgctgaggattaaatgagatg-atgcgtggaaagcattaggcatgta--gcacacttggc-----------agatggtGGTCGGCTCCCTGTGCTTTTCC-CCATTCTGTGGCCTACAGTTTAAAT----GGTG
i cebCap1.NW_016107979v1    C 0 C 0
s canFam3.chr9               55248607 108 +  61074082 ctgcccaggtgtcaagaattaaatgagaagcatgcctgtaG--TGTGAGGCATTCAGGGCGCACT---C-----------AGATGTCCATGGGCGCACTTTGCTTTTCCA------------CTAAAGTGAAAAT----A---
i canFam3.chr9              I 297 C 0
s dasNov3.JH564958             180923  74 +    584178 --------TCACAGAGGATTA----------ATGCATGTCAA------GGCATATG--GTG---TTGGT-----------------------------TCTGCTTTTCCACCAGTCTCTGGCCTAAAAGTTA-----------
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e otoGar3.GL873533             429702 445 -  31380117 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M

a score=43216.000000
s hg38.chr15_KI270850v1_alt    314929 12 +    430880 GGAAAAAGGACG
s panPan2.chr15              80425405 12 +  99763055 GGAGAAAGGACG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26059 12 -   1709092 GGAAAAAGGACG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60866619 12 + 169600520 GGGAAAAGCGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108393640 12 - 171882078 GGGAAAAGCGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        67738 12 +   6271500 GGAAAAAGGGTG
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              21083071 12 -  24206276 GGGAAAAGCATG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       406646 12 -   1458659 GAGAAGAGGATG
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        20521 12 -   1784207 GGAAAAAGAACA
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50453376 12 +  54856640 GGAAGAAGGACG
i saiBol1.JH378108          C 0 I 1664
s cebCap1.NW_016107979v1      1007124 12 +   1024465 GAAGAACAGACA
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             430147 12 -  31380117 GAAAAAAGGTTA
i otoGar3.GL873533          I 445 C 0
s canFam3.chr9               55248715 11 +  61074082 -GAAGGTGGTCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             180997  8 +    584178 ----AAAGGATG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M

a score=30187.000000
s hg38.chr15_KI270850v1_alt    314941 5 +    430880 TGAGA
s panPan2.chr15              80425417 5 +  99763055 TGAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26071 5 -   1709092 TGAGA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60866631 5 + 169600520 TGAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108393652 5 - 171882078 TGAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        67750 5 +   6271500 TGAGA
i macNem1.NW_012011056v1    C 0 C 0
s chlSab2.chr29              21083083 5 -  24206276 TGAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       406658 5 -   1458659 TGAGA
i manLeu1.NW_012105520v1    C 0 C 0
s colAng1.NW_012117110v1        20533 5 -   1784207 TGAGA
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1007136 5 +   1024465 TGAGA
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             430159 5 -  31380117 TGGGG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55248726 5 +  61074082 TGAGG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             181005 5 +    584178 AGAGA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cerAty1.NW_012002657v1          249 2260 -   1987038 M
e saiBol1.JH378108           50453388 1664 +  54856640 I

a score=242353.000000
s hg38.chr15_KI270850v1_alt    314946 59 +    430880 TTTGATGCTAGGGAAGG-AGGCATGGGGTTCTAAGCAAGGGAGACAGTCTCTTAGGCCTG
s panPan2.chr15              80425422 58 +  99763055 TTTGATGCTAGGGAAG--AGGCATGGGGTTCTAGGCAAGGGAGCCAGTCTCTTAGGCCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26076 59 -   1709092 TTTGATGCTAGGGAAGG-AGGCATGGGGTTCTAGGCAAGGGAGGCAGTCTCTTAGGCCTG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60866636 59 + 169600520 TTTGACGCTGGGGAAGG-ATGCATTGGGTTCCAGGCAAGGGAGGCAGGCTCTGAGGCCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108393657 59 - 171882078 TTTGACGCTGGGGAAGG-ATGCATTGGGTTCCAGGCAAGGGAGGCAggctctgaggcctg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        67755 50 +   6271500 TTTGAGGCTGGGGAAGG-AGGCA---------AGACAATGGATGCAGTCACTTAGGCCTG
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1         2578 59 -   1987038 TTTGAGGCTGGGGAAGG-ATGCATTGGGTTGCAGGCAAGGGAGGCAGGCTCTTAGGCCTG
i cerAty1.NW_012002657v1    M 2260 C 0
s chlSab2.chr29              21083088 59 -  24206276 TTTGAGGCTGGGGAAGG-ATGCATTGGGTTCCAGGCAAGGGAGGCAGTCTCTTAGGCCTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012105520v1       406663 59 -   1458659 TTTGAGGCTGAGCAAAG-AGGCATGGGGTTCCAGGCAAGGGAGACAGTCActtaggcctg
i manLeu1.NW_012105520v1    C 0 N 0
s colAng1.NW_012117110v1        20538 59 -   1784207 TTTTAGGCTGGGGAAGG-AGGCATGGGGTTCTAGGCAAGGGAAGCAGTCTCTTAGGCCTG
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1007141 58 +   1024465 TTTGAGGCTGGGGAAGG-AGGCATGGGGTTCTAGGCAAGGGAGGCAGTCTCTCAGGCTG-
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             430164 60 -  31380117 TCTGAGGTTGAGTGAGGCAGGAACAGGGCTCTGTGCAAGGGAGATGGCCAGTCAGGCCTG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55248731 59 +  61074082 CATGAGGAAGGGTAAGG-GAAGTGTGGGTCCCTGGATATAGGGGCAGTCACTGAAGTCCT
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958             181010 31 +    584178 -------------AAAG-AGTTGTGAGGTGTGAGGCTAGGG--------CCTT-------
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e saiBol1.JH378108           50453388 1664 +  54856640 I

a score=150323.000000
s hg38.chr15_KI270850v1_alt    315005 31 +    430880 GAGCAAGG-GGCCAGGGGCCTGGGCAGGCCAC
s panPan2.chr15              80425480 31 +  99763055 GAGCAAGG-GGCCAGGGGCCTGGGCAGGCCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26135 31 -   1709092 GAGCAAGG-GGCCAGGGGCCTGGGCAGGCCAC
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60866695 31 + 169600520 GAGCAAGG-GACCAGGGGCCTGGGCAGGCCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108393716 31 - 171882078 gagcaagg-gaccaggggcctgggCAGGCCAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        67805 31 +   6271500 GAGCAAGG-GGCCAGGAGCCTGGGCAGGCAAC
i macNem1.NW_012011056v1    C 0 C 0
s cerAty1.NW_012002657v1         2637 31 -   1987038 GAGCAAGG-GACCAGGGGCCTGGGCAGGCCAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21083147 31 -  24206276 GAGCAAGG-GACCAGGGGCCTGGGCAGGCCAC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        20597 31 -   1784207 AAGCAAGG-GGCCAGGGGCCTGGGCAGACCAC
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1007199 31 +   1024465 GAGCCAGG-GGCCAGGCGCCTGGGCAGGCCAC
i cebCap1.NW_016107979v1    C 0 I 1022
s otoGar3.GL873533             430224  7 -  31380117 GAGCAAG-------------------------
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55248791 32 +  61074082 GAGCGAGGAAGCCAGGGGCCTGGGCGGGCCGC
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958             181041 31 +    584178 ATGCAAGG-AGGCCAGGGCCTGGGCAGGCAGC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e saiBol1.JH378108           50453388 1664 +  54856640 I

a score=200610.000000
s hg38.chr15_KI270850v1_alt    315036 61 +    430880 AGAGCCCCACAGTGCC----------------------CTCGCTACCCTATTAATGGGCCAGGAATCTGGAAGCCAGCCACCA
s panPan2.chr15              80425511 61 +  99763055 AGAGCCCCACAGTGCC----------------------CTCGCTACCCTATTAATGGGCCAGGAATCTGGAAGCCAGCCACCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26166 61 -   1709092 AGAGCCCCACAGTGCC----------------------CTCGCTACCCTATTAATGGGCCAGGAATCTGGAAGCCAGCCACCA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60866726 61 + 169600520 AGAGCACCACAGTGCC----------------------CTTGCTACCCTATTAATGGGCCAGGAATCTGGAAGCCAGCTAGTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108393747 61 - 171882078 AGAGCACCACAGTGCC----------------------CTTGCTACCCTATTAATGGGCCAGGAATCTGGAAGCCAGCTAGTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        67836 59 +   6271500 --AGCCCCACAGTGCC----------------------CTCGCTACCCTACTTATGGGCCCAGAATCTAGAAGCCAGCCACCA
i macNem1.NW_012011056v1    C 0 I 4
s cerAty1.NW_012002657v1         2668 61 -   1987038 AGAGCCCCACAGTGCC----------------------CTTGCTACCCTATTAATGGGCCAGGAATCCGGAAGCCAGCTAGTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21083178 61 -  24206276 AGAGCACCACAGTGCC----------------------CTTGCTACCCTATTAATGGGCCAGGAATCCGGAAGCCAGCTAGTA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        20628 61 -   1784207 AGAGCCCCACAGTGCC----------------------CTTGCTACCCTATTAATGGGCCAGGAATCTGGAAGCCAGCCAATA
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             430231 49 -  31380117 ----CCCCACAGTGCC----------------------CCCACTAC--------TGGGCTTAGAGTCTGGAAGTAGGCTACCA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55248823 37 +  61074082 AGAGCCTCCCGCTTTC----------------------CTCTC--------------------AGCACGGGTGCCAGCC----
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             181072 81 +    584178 AGAGCCTTACCATTTCTGCACTGAGCAGACTTCTGTATCCCCCTTCCCTCTCG--GGGCGCAGAGTCTGGAAGCAGTCCACGG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1007230 1022 +   1024465 I
e saiBol1.JH378108           50453388 1664 +  54856640 I

a score=86252.000000
s hg38.chr15_KI270850v1_alt    315097 27 +    430880 CATGTCCTCATGCCCAGGGTCTTCCGG
s panPan2.chr15              80425572 27 +  99763055 CATGTCCTCATGCCCAGGGTCTTCCGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26227 27 -   1709092 CATGTCCTCATGCCCAGGGTCTTCCGG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60866787 27 + 169600520 AACGCCCTCATGCCCAGGATCATCCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108393808 27 - 171882078 AACGCCCTCATGCCCAGGATCATCCTG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1         2729 27 -   1987038 AACGCCCTCATGCCCAGGATCATCCTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21083239 27 -  24206276 AATGCCCTCATGCCCAGGATCTTCCTG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        20689 27 -   1784207 CATGCCCTCATGTCCAGGGTCTTCCTG
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             430280 27 -  31380117 CCTTCCCTCACGTCCAGGGTCTTCCTG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55248860 20 +  61074082 -------TTAGTCCCTGGGTCTTCCCA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             181153 27 +    584178 CTCACCCTCACTTCCAGGGTCTTCCCG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1007230 1022 +   1024465 I
e macNem1.NW_012011056v1        67895  4 +   6271500 I
e saiBol1.JH378108           50453388 1664 +  54856640 I

a score=208551.000000
s hg38.chr15_KI270850v1_alt    315124 39 +    430880 CAGGTGGAGCTGAAGAGCCAAGAGGCTCCGAGTCTGCAG
s panPan2.chr15              80425599 39 +  99763055 CAGGTGGAGCTGAAGAGCCAAGAGGCTCCGAGTCTGCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26254 39 -   1709092 CAGGTGGAGCTGAAGAGCCAAGAGGCTCCGAGTCTGCAG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60866814 39 + 169600520 CAGGTGGAGCTGAAGAGCCAAGAGGCTCAGAGTCTGCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108393835 39 - 171882078 CAGGTGGAGCTGAAGAGCCAAGAGGCTCAGAGTCTGCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        67899 39 +   6271500 CAGGTGGAGTTGAAGAGCCAAGAGGCTCAGACTCTGCAG
i macNem1.NW_012011056v1    I 4 I 16627
s cerAty1.NW_012002657v1         2756 39 -   1987038 CAGGTGGAGCTGAAGAGCCAAGAGGCTCAGAGTCTGCAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21083266 38 -  24206276 CAGGTGGAGCTGAAGAGCC-AGGGGCTCAGAGTCTGCAG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        20716 39 -   1784207 CAGGTGGGGCTGAAGAGCCAAGAGGCTCAGAGTCTGCAG
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             430307 39 -  31380117 CAGGTGGAACTGAAGAATGAAGAGGCGAAGAGTCTACAG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55248880 39 +  61074082 CAGGTGGAGCTGAAGAGCCAGGAGGCTCAGAATCTACAG
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             181180 39 +    584178 CAGGTGGAGCTAAAGAGCAAAGAGGCTCAGGGTCTGCAG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1007230 1022 +   1024465 I
e saiBol1.JH378108           50453388 1664 +  54856640 I

a score=67590.000000
s hg38.chr15_KI270850v1_alt    315163 17 +    430880 CAGCAGCCAGACCAGTA
s panPan2.chr15              80425638 17 +  99763055 CAGCAGCCAGACCAGTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26293 17 -   1709092 CAGCAGCCAGACCAGTA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60866853 17 + 169600520 CAGCAGGGAGACCAGTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108393874 17 - 171882078 CAGCAGGGAGACCAGTA
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1         2795 17 -   1987038 CAGCAGGGAGACCAGCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21083304 17 -  24206276 CAGCAGGGAGACCAGTA
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        20755 17 -   1784207 CAGCAGTGAGACCAGTA
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873533             430346 17 -  31380117 CAGGAGAGAGATCAGTA
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55248919 17 +  61074082 CAGCAGCGGGACCAGTA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             181219 17 +    584178 GAGCAGCGGGACCAGTA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1007230 1022 +   1024465 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e saiBol1.JH378108           50453388 1664 +  54856640 I

a score=13057.000000
s hg38.chr15_KI270850v1_alt    315180 3 +    430880 CCT
s panPan2.chr15              80425655 3 +  99763055 CCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26310 3 -   1709092 CCT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60866870 3 + 169600520 CCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108393891 3 - 171882078 CCT
i macFas5.chr7              C 0 I 1436
s cerAty1.NW_012002657v1         2812 3 -   1987038 CCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21083321 3 -  24206276 CCT
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        20772 3 -   1784207 CCT
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50455052 3 +  54856640 CCA
i saiBol1.JH378108          I 1664 C 0
s otoGar3.GL873533             430363 3 -  31380117 TCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55248936 3 +  61074082 CAT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             181236 3 +    584178 CCT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1007230 1022 +   1024465 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I

a score=6600.000000
s hg38.chr15_KI270850v1_alt    315183 1 +    430880 G
s panPan2.chr15              80425658 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26313 1 -   1709092 G
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60866873 1 + 169600520 G
i rheMac8.chr7              C 0 I 1451
s macFas5.chr7              108395330 1 - 171882078 G
i macFas5.chr7              I 1436 C 0
s cerAty1.NW_012002657v1         2815 1 -   1987038 G
i cerAty1.NW_012002657v1    C 0 I 1920
s chlSab2.chr29              21083324 1 -  24206276 G
i chlSab2.chr29             C 0 I 1383
s colAng1.NW_012117110v1        20775 1 -   1784207 G
i colAng1.NW_012117110v1    C 0 I 1886
s saiBol1.JH378108           50455055 1 +  54856640 G
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             430366 1 -  31380117 G
i otoGar3.GL873533          C 0 I 1561
s canFam3.chr9               55248939 1 +  61074082 G
i canFam3.chr9              C 0 I 1663
s dasNov3.JH564958             181239 1 +    584178 G
i dasNov3.JH564958          C 0 I 1726
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1007230 1022 +   1024465 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I

a score=287.000000
s hg38.chr15_KI270850v1_alt    315184 3 +    430880 -GAG
s panPan2.chr15              80425659 3 +  99763055 -GAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26314 3 -   1709092 -AGC
i gorGor5.CYUI01015556v1    C 0 C 0
s macFas5.chr7              108395331 3 - 171882078 -GAG
i macFas5.chr7              C 0 C 0
s saiBol1.JH378108           50455056 3 +  54856640 -GGG
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             431928 4 -  31380117 AAGC
i otoGar3.GL873533          I 1561 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             181240 1726 +    584178 I
e canFam3.chr9               55248940 1663 +  61074082 I
e cebCap1.NW_016107979v1      1007230 1022 +   1024465 I
e colAng1.NW_012117110v1        20776 1886 -   1784207 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e rheMac8.chr7               60866874 1451 + 169600520 I

a score=17268.000000
s hg38.chr15_KI270850v1_alt    315187 13 +    430880 CCCCAGTCCCACA
s panPan2.chr15              80425662 13 +  99763055 CCCCAGTCCCACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26317 13 -   1709092 CCCCAGTCCCACA
i gorGor5.CYUI01015556v1    C 0 C 0
s macFas5.chr7              108395334 13 - 171882078 CCCGAATCCCCCA
i macFas5.chr7              C 0 C 0
s saiBol1.JH378108           50455059 13 +  54856640 CCCCAGCCCCCCA
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             431932 12 -  31380117 CCACAGCCCCCC-
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55250603  9 +  61074082 CCCCAGCCC----
i canFam3.chr9              I 1663 C 0
s dasNov3.JH564958             182966 13 +    584178 CCCCAGCCCCTCA
i dasNov3.JH564958          I 1726 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1007230 1022 +   1024465 I
e colAng1.NW_012117110v1        20776 1886 -   1784207 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e rheMac8.chr7               60866874 1451 + 169600520 I

a score=55706.000000
s hg38.chr15_KI270850v1_alt    315200 24 +    430880 AGGAGCTTGGATGTGCGGACAAGC
s panPan2.chr15              80425675 23 +  99763055 -GGAGCTTGGGTGTGCGGACAAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26330 23 -   1709092 -GGAGCTTGGGTGTGCGGACAAGC
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60868325 24 + 169600520 AGGAGCTTGGGTGTGCTGACAAGC
i rheMac8.chr7              I 1451 C 0
s macFas5.chr7              108395347 23 - 171882078 -GGAGCTTGGGTGTGCTGACAAGC
i macFas5.chr7              C 0 C 0
s colAng1.NW_012117110v1        22662 24 -   1784207 AGGAGTTTGGGTGTGCTGACAAGC
i colAng1.NW_012117110v1    I 1886 C 0
s saiBol1.JH378108           50455072 23 +  54856640 -GCAGCTTGGGACTGTCAACAAGG
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             431944 24 -  31380117 AGGAGCTTGGAGCTACCAACAAGC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55250612 24 +  61074082 AAGAGCTTGGTGCTGCCAATGGCC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             182979 23 +    584178 -GGAGCTTGGAGCTGGCAATGGCC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1007230 1022 +   1024465 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I

a score=247017.000000
s hg38.chr15_KI270850v1_alt    315224 77 +    430880 AGGGTGGTGAGTAGAGCCCTC-----AGGCGGGGTGGGCAGGCAGGAGCA-GGGGAGGCTCGCACTGT-----GCCCAGATTCCCACC
s panPan2.chr15              80425698 77 +  99763055 AGGGTGGTGAGTAGAGCCCTC-----AGGCGGGGTGGGCAGGCAGGAGCA-GGGGAGGCTCGCACTGT-----GCTCAGATTCCCACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26353 78 -   1709092 AGGGTGGTGAGTAGAGCCCTC-----AGGCGGGGTGGGCAGGCAGGACCAGGGGGAGGCTCGCACTGT-----GCTCAGATTCCCACC
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60868349 77 + 169600520 AGGGTGGTGGGTAGAGCGCTC-----AGGCGGGGTGGGCGGGCAGGAGCA-GGGGAGGCTCGCACTGA-----CCTCAGATCCCCTCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108395370 77 - 171882078 AGGGTGGTGGGTAGAGCGCTC-----AGGCGGGGTGGGCGGGCAGGAGCA-GGGGAGGCTCGCACTGA-----CCTCAGATCCCCTCC
i macFas5.chr7              C 0 C 0
s colAng1.NW_012117110v1        22686 77 -   1784207 AGGGTGGCGAGTAGAGCCCTC-----AGGCGGGGTGGGCAGGCAGGAGCA-GGGGAGGCTCGCACTGA-----GCTCAGATCCCCTCC
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50455095 77 +  54856640 AGGGTGGTGAGTGGAGCCTCC-----AGGCGGGGTGGGCAGGCGGAAGCA-GGGGAGACTCACCCCGA-----GCTGAGATCCCCACC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1008252 77 +   1024465 AGGATGGTGAGTAGAGCCCTC-----AGGTGGGGTGGGCAGGCAGGAGCA-GGGGAGGCTGGCACTGG-----ACTCAGATCCCCACC
i cebCap1.NW_016107979v1    I 1022 I 198
s otoGar3.GL873533             431968 73 -  31380117 AGGGTGGTGAGTAGAGCCCTT-----GGGCAGGGTGG---GGCAGGAGCA-GGGGAAGGCTACAAGTG-----GCTCAGAGCCCTGC-
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55250636 68 +  61074082 AGGGTGGTGAGTAGAGCCCTC-----AGGGTGGGTGGG---------GCG-GGGAGAGCTCGCACAGC-----ACTCAGAGCCCTGTT
i canFam3.chr9              C 0 I 1
s dasNov3.JH564958             183002 81 +    584178 ---AGGGTGAGTAGAGCCCTCTCAGAAAGGTGGAAAGGCAGGTAGAAGCA-GGGGAGA---GCACAGAAGGGTGCTCAGAGCCCTGCC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I

a score=186893.000000
s hg38.chr15_KI270850v1_alt    315301 102 +    430880 CCC-TCCCTCTCTCT-------GAAGATCTTAGTGAGCTGAGCCT------CACTGATAGCATGGAGGCTGCACCGGGACAGGACAGGGAGGGTTC---TCCCCCATGACAACCCCACT
s panPan2.chr15              80425775 103 +  99763055 CCCCTCCCTCTCTCT-------GAAGATCTTAGTGAGCTGAGCCT------CACTGATAGCATGGAGGCTGCACCGGGAGAGGACAGGGAGGGTTC---TCCCCCATGACAACCCCACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26431 101 -   1709092 CCCCTCTCTCTCTCT-------GAAGATCTTAGTGAGCTGAGCCT------CACTGATAGCATGG-GGCTGCACCGGGAGAGGACAGGGAGGGTTC---T-CCCCATGACAACCCCACT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60868426  97 + 169600520 ----TCCCTCTGTCT-------GAAGATCTTCGTG-GCTGAGCCT------CACTGACAGCGTGGAGCCTGCACCAGGAGAGGCCAGGGAGGGTTC---T-CCCCACCACAACCCCACG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108395447  97 - 171882078 ----TCCCTCTGTCT-------GAAGATCTTCGTG-GCTGAGCCT------CACTGACAGCGTGGAGCCTGCACCAGGAGAGGCCAGAGAGGGTTC---T-CCCCACCACAACCCCACG
i macFas5.chr7              C 0 C 0
s colAng1.NW_012117110v1        22763  98 -   1784207 ----TCCCTCTCTCC-------AAAGGTCTTTGTGAGGTGAGCCT------CACTGACAGCGTGGAGCCTGCACCAGGAGAGGCCAGGGAAGTTTC---T-CCCAGCGACCGCCCCACT
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50455172  95 +  54856640 ----TCCCTCTCTCC-------AAAGATCTTTGTGAGGTGAGCCT------CGCAGACAGCATGGAGCCTGCA---AGAGACACCGGGGAGCGTTC---T-GCCCAGGGCAACCCCACT
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             432041  98 -  31380117 -----TCCTCTCTCCA------AAAGATTTTTATGAGGTGAGCCT------CAGTGATAACATGGAACCTGCACGAGGAGAGGCCAGGGAGGTGTC---T-CCGCCTGAGGACCCCACT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55250705 117 +  61074082 -CTTTCTCTCTCCCTGACCCACAAAGATCTTCGAGAGGTGAGCCTGGCTGACAATGATAATGTGGCACCTCCTCAGGGAGAGGCCCTACCAGGCCACAGT-GCCCCTGAGAACCCCACT
i canFam3.chr9              I 1 C 0
s dasNov3.JH564958             183083  77 +    584178 ----TTTCTCTCTCC-------TCAGACCTTCACGAGGTGAATTT------GGCAGATGATGGGGAACCTGTAAAAGGAG---------------C---T-------GAGAATCCCACT
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1008329 198 +   1024465 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I

a score=166330.000000
s hg38.chr15_KI270850v1_alt    315403 63 +    430880 GCACAGCAGATCCAGCAGCTGCTTCCTCTAATGCAGGACTCCCCAGGAGCACCCAGGCTT---GGG
s panPan2.chr15              80425878 63 +  99763055 GCACAGCAGATCCAGCAGCTGCTTCCTCTAATGCAGGACTCCCCAGGAGCACCCAGGCTT---GAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26532 63 -   1709092 GCACAGCAGATCCAGCAGCTGCTTCCTCTAATGCAGGACTCCCCAGGAGCACCCAGGCTT---GGG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60868523 60 + 169600520 GCACAGCAGATCGTGCAGCTGCCTCCTCTAACGCAGGACTCTCCAGGAGCACCGAGGCTT------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108395544 60 - 171882078 GCACAGCAGATCGTGCAGCTGCTTCCTCTAACGCAGGACTCTCCAGGAGCACCGAGGCTT------
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012106908v1            0 63 -   1397330 GCACAGCAGATCGTGCAGCTGCTTCCTCTAACGCAGGACTCCCCAGGAGCACCGAGGCTTGGG---
i manLeu1.NW_012106908v1    N 0 I 10
s colAng1.NW_012117110v1        22861 59 -   1784207 GCACAGCAGATCGTGCAGCTGCTTTCTGTAATGCAGGACAC-CCAGGAACACCCAGGCTT------
i colAng1.NW_012117110v1    C 0 I 3
s saiBol1.JH378108           50455267 62 +  54856640 GTAGGAAACATCGTGCAGCCGCCTTGTGAAATG-AAGACCTTCCAGGAGCACCCAGGCTT---GGG
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873533             432139 62 -  31380117 ACTCAGCAGATCATGCAACTGCTCCGTGAAATCCAGAACCC-GCAGGAGCGCCCAGGCTT---GGG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55250822 59 +  61074082 GCACAGCAAATCATGCAGCTTCTGCAGGAGATGCAGAATCC-CCAGCCATACCTAGGTTT------
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             183160 62 +    584178 GCCCAGCAAATTATGCAACTGCTACGTGAGATTCAAAACCC-CCAGAATCACCCAGGCCT---GGG
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1008329 198 +   1024465 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I

a score=987.000000
s hg38.chr15_KI270850v1_alt    315466 3 +    430880 TGG
s panPan2.chr15              80425941 3 +  99763055 TGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26595 3 -   1709092 TGG
i gorGor5.CYUI01015556v1    C 0 C 0
s otoGar3.GL873533             432201 3 -  31380117 CAG
i otoGar3.GL873533          C 0 I 86
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             183222 0 +    584178 C
e canFam3.chr9               55250881 0 +  61074082 C
e cebCap1.NW_016107979v1      1008329 198 +   1024465 I
e colAng1.NW_012117110v1        22920 3 -   1784207 I
e manLeu1.NW_012106908v1           63 10 -   1397330 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395604 0 - 171882078 C
e rheMac8.chr7               60868583 0 + 169600520 C
e saiBol1.JH378108           50455329 0 +  54856640 C

a score=1182.000000
s hg38.chr15_KI270850v1_alt    315469 45 +    430880 AGAAGCTGTTGGTACAGGAGAGGCGGCAGGAGGAGCAGGAGAGGC
s panPan2.chr15              80425944 45 +  99763055 AGAAGCTGTTGGTACAGGAGAGGCGGCAGGAGGAGCAGGAGAGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26598 45 -   1709092 AGAAGCTGTTGGTACAGGAGAGGCAGCAGGAGGAGCAGGAGAGGC
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60868583 13 + 169600520 --------------------------------GCGCAGCAACCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108395604 13 - 171882078 --------------------------------GCGCAGCAACCCC
i macFas5.chr7              C 0 C 0
s colAng1.NW_012117110v1        22923 10 -   1784207 -----------------------------------CAACAACCCC
i colAng1.NW_012117110v1    I 3 C 0
s saiBol1.JH378108           50455329 10 +  54856640 -----------------------------------CAGAAACCCC
i saiBol1.JH378108          C 0 C 0
s canFam3.chr9               55250881 13 +  61074082 --------------------------------AAGCAAGAATCCC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             183222 10 +    584178 -----------------------------------CAACAGCCCC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1008329 198 +   1024465 I
e otoGar3.GL873533             432204 86 -  31380117 I
e manLeu1.NW_012106908v1           63 10 -   1397330 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I

a score=81516.000000
s hg38.chr15_KI270850v1_alt    315514 33 +    430880 TGCATGCCATTCTTTT--CGGGCTGCCGAGAACAG
s panPan2.chr15              80425989 33 +  99763055 TGCATGCCATTCTTTT--CGGGCCGCCGAGAACAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26643 33 -   1709092 TGCATGCCATTCTTTT--CAGGCTGCCGAGAACAG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60868596 33 + 169600520 TGCATGCCATTCTTTT--CACCGTGCCGAGATCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108395617 33 - 171882078 TGCATGCCATTCTTTT--CACCGTGCCGAGATCAG
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012106908v1           73 33 -   1397330 TGCATGCCATTCTTTT--CACCGTGCTGAGATCAG
i manLeu1.NW_012106908v1    I 10 C 0
s colAng1.NW_012117110v1        22933 33 -   1784207 TGCATGCCATTCTTTT--CGGGCTCCCGAGAACAG
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50455339 35 +  54856640 TATGTGCCATTTTTTTACCAGGCTGCCAAGAACAG
i saiBol1.JH378108          C 0 C 0
s canFam3.chr9               55250894 35 +  61074082 TGCGTCCCCTTCTTCTACCGGGCTGATGACAATGA
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             183232 35 +    584178 TGCATCCCATTCTTTTACCGGGCTGATGAGAACGA
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e cebCap1.NW_016107979v1      1008329 198 +   1024465 I
e otoGar3.GL873533             432204 86 -  31380117 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I

a score=71644.000000
s hg38.chr15_KI270850v1_alt    315547 22 +    430880 GGAGCTAAACATCACCATCATC
s panPan2.chr15              80426022 22 +  99763055 AGAGCTAAACATCACCATCATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26676 22 -   1709092 GGAGATAAACATCACCATCATC
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60868629 22 + 169600520 GGAGATAAACATCATCATCATC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108395650 22 - 171882078 GGAGATAAACATCACTATCATC
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012106908v1          106 22 -   1397330 GGAGATAAACATCACCATCATC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        22966 22 -   1784207 GGAGATAAACATCGCCATCACC
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50455374 22 +  54856640 GGAGATCAGCATCACCATCTTC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1008527 22 +   1024465 GGAGGTAAACATCACCATCAGC
i cebCap1.NW_016107979v1    I 198 C 0
s canFam3.chr9               55250929 22 +  61074082 CGAGGTGAAGATCCTGGTGATC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             183267 22 +    584178 ACAAGTGAAGATTATCATCATC
i dasNov3.JH564958          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e otoGar3.GL873533             432204 86 -  31380117 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I

a score=29880.000000
s hg38.chr15_KI270850v1_alt    315569 7 +    430880 TAAGAGC
s panPan2.chr15              80426044 7 +  99763055 TAAGAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26698 7 -   1709092 TAAGAGC
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60868651 7 + 169600520 TAAGAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108395672 7 - 171882078 TAAGAGC
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012106908v1          128 7 -   1397330 TAAGAGC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        22988 7 -   1784207 TAAGAGC
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50455396 7 +  54856640 TAAGAGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1008549 7 +   1024465 TAAGAGC
i cebCap1.NW_016107979v1    C 0 C 0
s canFam3.chr9               55250951 7 +  61074082 TAAGAGC
i canFam3.chr9              C 0 I 16
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             183289 0 +    584178 C
e otoGar3.GL873533             432204 86 -  31380117 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I

a score=32964.000000
s hg38.chr15_KI270850v1_alt    315576 13 +    430880 GGGTCAAGGAATT
s panPan2.chr15              80426051 13 +  99763055 GGGTCAAGAAATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26705 13 -   1709092 TGCTCAAGAAATT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60868658 13 + 169600520 TGGTCAAGAAATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108395679 13 - 171882078 TGGTCAAGAAATT
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012106908v1          135 13 -   1397330 TGGTCAAGAAATT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        22995 13 -   1784207 CGGTCAAAAAATC
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50455403 13 +  54856640 TGGGCAAGAAATT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1008556 13 +   1024465 TGGCCAAGAAATT
i cebCap1.NW_016107979v1    C 0 I 94
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I

a score=167364.000000
s hg38.chr15_KI270850v1_alt    315589 112 +    430880 AAAAAAAAACAACAAAACGTTTAAGGGGTTAATATCCTACACAATTCATTTACTTCATTTGAATGTTAGAGCCACTTATGTTTATTTGTGtttctaattta-------------------------------------aatttatttgt
s panPan2.chr15              80426064 144 +  99763055 TAAAAAAAA-----AAACGTTTAAGGGGTTAATATCCTACACAATTCATTTACTTCATTTGAATGTTAGAGCCACTTATGTTTATTTGTGTTTCTAATTTATAGTTTAAATTTATTTGTGTTTCTAATTTATAGTTTAAATTTATTTGT
i panPan2.chr15             C 0 I 2
s gorGor5.CYUI01015556v1        26718 145 -   1709092 TAAAAAAACAAACAAAACGTTTAAGGGGTTAATATCCTACACAATTCATTTACTTCATTTGAATGTTAGAGCCACTTATG----TTTGTGTTTCTAATTTATAGTTTAAATTTATTTGTGTTTCTAATTTATAGTTTAAATTTATTTGT
i gorGor5.CYUI01015556v1    C 0 I 2
s rheMac8.chr7               60868671 111 + 169600520 TAAAAACAA-ACAAAAAAAGTTTAGGGGTTAATCTCCTACACAATTCATTTACTTCATTTGAATGTTAGAGCCACTCATGTTTATTTGTGTTTCTAACTTA-------------------------------------AATTTATTTGT
i rheMac8.chr7              C 0 I 2
s macFas5.chr7              108395692  96 - 171882078 TAAAAACAA-ACGAAAAAAGTTTAGGGGTTAATCTCCTACACAATTCATTTACTTCATTTGAATGTTAGAGCCACTCATGTTTATTTGTGTTTCTAA----------------------------------------------------
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012106908v1          148 111 -   1397330 TAAGAAAAA-AAAAAAACAGTTAAGAGATTAATCTCCTACACAATTCATTTACTTCATTTGAATGTTAGAGCCACTCATGTTTATTTGTGTTTCTAACTTA-------------------------------------AATTTATTTGT
i manLeu1.NW_012106908v1    C 0 I 2
s colAng1.NW_012117110v1        23008  94 -   1784207 AAAAAA-------AAAAAAGTTAAGGGGTTAATCTCCTACACAATTCATTTACTTCATTTGAATGTTACAGCCACTCATGTTTATTTGTGTTTCTAATTTA------------------------------------------------
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50455416 108 +  54856640 TGAAAACCA---AAACAAAGTTATGGTGTTAAT---CTACACAATTCATTAACTTTATCTGGATGTTAAAGCCACTCATGATTCTTTGTGTTTCTCATTTA-----------------------------------TACATTTCTTTGT
i saiBol1.JH378108          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             183289   0 +    584178 C
e canFam3.chr9               55250958  16 +  61074082 I
e cebCap1.NW_016107979v1      1008569  94 +   1024465 I
e otoGar3.GL873533             432204  86 -  31380117 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I

a score=4204.000000
s hg38.chr15_KI270850v1_alt    315701 19 +    430880 ttctaatttatagtttaaa-
s panPan2.chr15              80426210 19 +  99763055 TTCCAATTTATAGTTTAAA-
i panPan2.chr15             I 2 C 0
s gorGor5.CYUI01015556v1        26865 19 -   1709092 TTCTAATTTATAGTTTAAA-
i gorGor5.CYUI01015556v1    I 2 C 0
s macFas5.chr7              108395788  6 - 171882078 -------------CTTAAA-
i macFas5.chr7              C 0 C 0
s colAng1.NW_012117110v1        23102  9 -   1784207 ----------TAGTTTAAA-
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50455524 13 +  54856640 -------TTATAAGTTTAGC
i saiBol1.JH378108          C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e cebCap1.NW_016107979v1      1008569 94 +   1024465 I
e otoGar3.GL873533             432204 86 -  31380117 I
e manLeu1.NW_012106908v1          259  2 -   1397330 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e rheMac8.chr7               60868782  2 + 169600520 I

a score=14610.000000
s hg38.chr15_KI270850v1_alt    315720 11 +    430880 tttatttgtaa
s panPan2.chr15              80426229 11 +  99763055 TTTATTTGTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26884 11 -   1709092 TGTATTTGTAA
i gorGor5.CYUI01015556v1    C 0 C 0
s macFas5.chr7              108395794 11 - 171882078 TTTATTTGTAG
i macFas5.chr7              C 0 C 0
s colAng1.NW_012117110v1        23111 11 -   1784207 TTTATTTGTAA
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50455537 11 +  54856640 ATTAATTATTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1008663 11 +   1024465 TTTATTTGTAA
i cebCap1.NW_016107979v1    I 94 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e manLeu1.NW_012106908v1          259  2 -   1397330 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e rheMac8.chr7               60868782  2 + 169600520 I

a score=75729.000000
s hg38.chr15_KI270850v1_alt    315731 40 +    430880 aAAGTTAAATGAGAGTGG----------GTCTTTCTCTCATGTTCACTCT
s panPan2.chr15              80426240 40 +  99763055 AAAGTTAAATGAGAGTGG----------GTCTTTCCCTCATGTTCACTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26895 40 -   1709092 AAAGTTAAATGAGAGTGG----------GTCTTTCTCTCATGTTCACTCT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60868784 40 + 169600520 AAAGTTAAAGGAGAGTGG----------GTCTTTCCCTCATGTTCACTCT
i rheMac8.chr7              I 2 C 0
s macFas5.chr7              108395805 40 - 171882078 AAAGTTAAAGGAGAGTGG----------GTCTTTCCCTCATGTTCACTCT
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012106908v1          261 40 -   1397330 AAAGTTAAAGGAGAGTGG----------GTCTTTCCCTCATGTTCACTCT
i manLeu1.NW_012106908v1    I 2 C 0
s colAng1.NW_012117110v1        23122 40 -   1784207 AAAGTTAAAGGAGAGTGG----------GTCTTTCCCTCATTTTCACTCT
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50455548  1 +  54856640 A-------------------------------------------------
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1008674 50 +   1024465 AAAGTTAAAGGAGAGTGGGCCTTCGTGTGTCTTTCACTGATGTTCTCTCT
i cebCap1.NW_016107979v1    C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I

a score=492866.000000
s hg38.chr15_KI270850v1_alt    315771 462 +    430880 GGCATCCTTTAGCAT-----TTTTT-----AAATTTGATAATTATAGGACGTTAGCATGCATATCGAGTTTGCCCTTATGTGGTGGGAGTTCAAACACACAAAGACGCACTGTATGCACACAACTGTTCTTGCTGGTTTGGGATAGGCTGCCATGCTTTTTAAATGTTAGTACAGCATGTATATTCATTACGGAATTCAGATAAAATTTCCTTATGTTCTGCTGTTATGTTTGATCGAATCCTAATCACAGTGAGCTCTTCATTAGCTCAATATGTGGTTTGCCCTCAAGTGCGCG--GTCTATTACTTTGTAATATGCCACTGTGAGTACTGACATTTACAGTTGTTT---AAAGGTGGAGCACTGGAAACAGCCTTTTCCCCTTTTTCTGTGTATTGGGGATGGGAGTAATAACATTTTGGGGAGCTTTTTAAATCTCCCAGAAGAGGAAAGTGGCCTGCTCTGGCAGGTGTGTG
s panPan2.chr15              80426280 462 +  99763055 GGCATCCTTTAGCAT-----TTTTT-----AAATTTGATAATTATAGGACGCTAGCATGCATATCGAGTTTGCCCTTATGTGATGGGAGTTCAAACACACAAAGACCCACTATATGCACACAACTGTTCTTGCTGGTTTGGGATAGGCTGCCATGCTTTTTTAATGTTAGTACAGCCTGTATATTCATTACGGAATTCAAATAAAATTTCCTTATGTTCTGCTGTTATGTTTGATCGAATCCTAATCACAGTGAGCTCTTCATTAGCTCAATATGTGGTTTGCCCTCAAGTGCGCG--GTCTATTACTTTGTAATATGCCACTGTGAGTACTGACATTTACAGTTGTTT---AAAGGTGGAGCGCTGGAAACAGCCTTTCCCCCTTTTTCTGTGTATTGGGGATGGGAGTAATAACATTTTGGGGAGCTTTTTAAATCTCCCAGAAGAGGAAAGTGGCCTGCTCTGGCAGGTGTGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        26935 461 -   1709092 GGCATCTTTTAGCAT-----TTTTT-----TAATTTGATAATTATAGGACGTTAGCATGCATATCGAGTTTGCCCTTATGTGGTGGGAGTTCAAACACACAAAAACCCACTATACGCACACAACTGTTCTTGCTGGTTTGGGATAGGCTGCCATGCTTTTTTAATGTTAGTACAGCATGTATATTCATTATGGAATTCAGATAAAATTTCCTTATGTTCTGCTGTTATGTTTGATTGAATCCTAATCACAGTGAGCTCTTCATTAGCTCAATGTGTGGTTTG-CCTCAAGTGCGCG--GTCTATTACTTTGTAATATGCCACTGTGAGTACTGACATTTACAGTTGTTT---AAAGGTGGAGCACTAGAAACAGCCTTTCCCCCTTTTTCTGTGTATTGGGGATGGGAGTAATAACATTTTGGGGAGCTTTTTAAATCTCCCAGAAGAGGAAAGTGGCCTGCTCTGGCAGGTGTGTG
i gorGor5.CYUI01015556v1    C 0 C 0
s colAng1.NW_012117110v1        23162 471 -   1784207 AGCATCCTTTAGCATTTCTCTTTTT-----CAGTTTGAAAATTGTAGGTCATTAGCTCGCATATCGAGTGTGCCCTTACCTGGTGGGAGTTCAAACACACAAAGACCCACTATTTTCACAAAACTGTTCTTGCTGGTTTGGAAAAGGCTGCCATGCTTTTTTAATGTTATTGCAGCATGTATATTCATTATGGAATTCAGATAAAATTTGCTTATGTTCTGTTGTTATGTTTGATTGAATCCCAATCACAGTGAGCTCCTCA-GAGCTCAATATGTGGGTTGCCCTCAAGTGCACGCTGTTTATTAGTTTGTAATATGTCACTGTGAGTACTGACATTTAGAGTAGTTTTAAAAAGGCCAAGAACTGGAAACAGCCTTTCCCCCTTTTTCTGTGTATTGGGGATGGGAGTAATAACATTTTGGGGAGTTTTTTAAATCTCCCAGAAGAGGAAAGTGGCCTGCTCTGGCAGGTGTGTG
i colAng1.NW_012117110v1    C 0 I 23
s saiBol1.JH378108           50455549 449 +  54856640 -------TTTAGCGT-----TTTTC-----TGTTTTGATAATTGTAGGTCAATAGCATGCATATCGAGTTTGGCCTTACGTGGTGGGAGTTCAAACACACAAAGACCCACTCTTTACACCAAACTCTT-TTGCTGGTTTGGAATAGGATGCCATGCTTTTTAAATGTTATTGCCGCATGTATACTTATTACGGAATTCAGATACAAT----TTATGTTCTGCTATCACAGTTGATCCGATCCTAATCACAGTGAGCTCTGAATTAGCTCAGTAGGTGGTTTGCCCTCAAGTGTGCACTGTCTGTTACTTTGTAACATGCCACTGTGAGTGCTGACATTGAGAGTTGCTA---AAAGGCCCAGAAATGGAAACAGCCTTTCCTCCGTTTTCTGTGTCTTTGGGATGGGAGTAATAACATTTTGGGGAGCTTTTTAAATCTCACAGGA---GAAAGTGGCCTACTCTGGCAGGTGTGTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1008724 462 +   1024465 GGCATCCTTTAGCGT-----TTTTCATTTTTAATTTGATAATCGTAGGTCATTAGCATGCCTATCGAGTTTGCCCTTACGTGGTGGGAGTTCAAACACAAAAAGACCCACTAGTGGCACAAAACCATTCTCCCTAGTTTGAAATAGGCTGCCATGGTTTTT-AATGTTATTGCAGCATGTATGTTCATTATGAAATTCAGATACAATTTGCTTATGTTCTGCTATGATAGTTGATGGAATCCTGATCACAGTGAGCTCTTAATTAGCTCAATATGTGCTTTGTCCTCACGTGCACACTGTTTATTACTTTGTAAGATGCCACTATGAGTACTGACATTTAGAGTTGTTG---AAAAGCCGAGAACTGGAAACAGCCTTTCTTCCATTTTCTGTGC------AAATGGAGTAATAACATTTTGGGGAGCTTTTAACATCTCACAGAAGAGGAAAATGGCCTGCTCTGGCAGGTATGTG
i cebCap1.NW_016107979v1    C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             183289   0 +    584178 C
e canFam3.chr9               55250958  16 +  61074082 I
e otoGar3.GL873533             432204  86 -  31380117 I
e manLeu1.NW_012106908v1          301   0 -   1397330 C
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395845   0 - 171882078 C
e rheMac8.chr7               60868824   0 + 169600520 C

a score=94833.000000
s hg38.chr15_KI270850v1_alt    316233 137 +    430880 CAGGAT---AGAATATGTTTCATTTGTTCTGGTGCCAAGAATGAGCGCTGTACTATGGTAGTTCCCTTAGGATTTGCATGTGCTCTGGGCTCATGAAGACATTGCATCATGAGCTGTGGCAGTTGTACTTTTTTTTGATG
s panPan2.chr15              80426742 137 +  99763055 CAGGAT---AGAATATGTTTCATTTGTTCTGGTGCCAAGAATGAGCACTGTACTACGGTAGTTCCCTTAGGATTTGCATGTGCTCTGGGCTCATGAAGATATTGCATCATGAGCTGTGGCAGTTGTACTCTTTTTTGATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        27396 136 -   1709092 CAGGAT---AGAATATGTTTCATTTGTTCCGGTGCCAAGAATGAGCACTGTACTATGGTAGTTCCCTTAGGATTTGCATGTGCTCT-GGCTCATGAAGATATTGCATCATGAGCTGTGGCAGTTGTCCTCTTTTTTGATG
i gorGor5.CYUI01015556v1    C 0 C 0
s saiBol1.JH378108           50455998 140 +  54856640 CAGAATAATAGAGTGTGCTTCATTGGTTCCCCAGCCAAGAATGAGCGCTGTACTATGGTAGTTCCCTTAGGGTTTTCCTGTGCTCTGGGCTCATGAAGATATTGCACTATGAGCTGCAGCAGCTGTACTCATTTTCAGTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1009186 135 +   1024465 CAGAAT-----GGAGTATTTGATTCATTCCCATGCCAAGAACAAGCGCTGTGCTGTGGCAGTTCTTTTAGGGTTTTCCTGTGCTCTGGGCTCATGAAGATACTGCATTGTGAGCTGCGGCAGCTGTGCTCTTTTTTGATG
i cebCap1.NW_016107979v1    C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             183289   0 +    584178 C
e canFam3.chr9               55250958  16 +  61074082 I
e otoGar3.GL873533             432204  86 -  31380117 I
e colAng1.NW_012117110v1        23633  23 -   1784207 I
e manLeu1.NW_012106908v1          301   0 -   1397330 C
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395845   0 - 171882078 C
e rheMac8.chr7               60868824   0 + 169600520 C

a score=59792.000000
s hg38.chr15_KI270850v1_alt    316370 50 +    430880 ACCTAAAAGGGGATTATTTCTGAGGAATGAAAGGCTCCCATCA-TGACTGT
s panPan2.chr15              80426879 50 +  99763055 ACCTAAAAGGGGATTATTTCTGAGGAATGAAAGGCTCCCATCA-TGACTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        27532 50 -   1709092 ACCTAAAAGGGGATTATTTCTGAGGAATGAAAGGCTCCCATCA-TGACTGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17178247 50 - 121039945 ACCTAAAAAGGGATTATTTCTGAGGAATGAAAGGCTCCCATCA-TGACTGT
i nomLeu3.chr6              N 0 C 0
s saiBol1.JH378108           50456138 51 +  54856640 ACCTAAAAAGGGATGATTTCTGAGGAATCAAAGGCTCCTATCGTTGACTAT
i saiBol1.JH378108          C 0 I 6
s cebCap1.NW_016107979v1      1009321 51 +   1024465 ACCTAAAAAGGGATGATTTCTGAGGAATAGAAGGCTCCCATCTTTGACTGT
i cebCap1.NW_016107979v1    C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e colAng1.NW_012117110v1        23633 23 -   1784207 I
e manLeu1.NW_012106908v1          301  0 -   1397330 C
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395845  0 - 171882078 C
e rheMac8.chr7               60868824  0 + 169600520 C

a score=127576.000000
s hg38.chr15_KI270850v1_alt    316420 154 +    430880 GGATGTGGAAAACCTTTTCTAGCTGAGAGCATTTATATCTACAATACATTTTAAAGTCAGAGTTCATGTTCCCTGTTTTAATCACATGACTACATGT-CCCAGTACACAAAAGGGCACTGGTTGGCATTCTCCTTAATGTATTCAGTAAAGATCA
s panPan2.chr15              80426929 154 +  99763055 GGATGCGGAAAACCTTTTCTAGCTGAGAGCATTTATATCTACAATACATTTTAAAGTCAGAGTTCATGTTCCCTGTTTTAATCACATGACTACATGT-CCCAGTACACAAAAGGGCACTGGTTGGCATTCTCCTTAATGTATTTCGTAAAGATCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        27582 155 -   1709092 GGATGTGGAAAACCTTTTCTAGCTGAGAGCATTTATATCTACAATACATTTTAAAGTCAGAGTTCGTGTTCCCTGTTTTAATCACATGACTACATGTCCCCAGTACACAAAAGGGCACTGGTTGGCATTCTCCTTAATGTATTTAGTAAAGATCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17178297 154 - 121039945 GGATGTGGAAAACCTTTTCTAGCTTAGAGCATTTGTATCTACAATACATTTTAAAGTCAGAGTTCATGTTCCCTGTTTTATTCACATGACTACATGT-CCCAGTACACAAAAGGGCACTGGTTGGCATTCTTCGTGATGTATTTAGTAAAGATCA
i nomLeu3.chr6              C 0 C 0
s cebCap1.NW_016107979v1      1009372 154 +   1024465 AGATGTGAAAAACCTTTCCTAGCTTAGAGCATTTATATCTATAATACATGGTAAAGTCAGAGTTTATGTTACCTGTTTCAATGACATGACTCCATGT-CTCAGTACATAAAAGAGCACTGGTTGGCATTCTTCTTAATGTATTTAGTAAAGATCA
i cebCap1.NW_016107979v1    C 0 I 349
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             183289   0 +    584178 C
e canFam3.chr9               55250958  16 +  61074082 I
e otoGar3.GL873533             432204  86 -  31380117 I
e colAng1.NW_012117110v1        23633  23 -   1784207 I
e manLeu1.NW_012106908v1          301   0 -   1397330 C
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395845   0 - 171882078 C
e rheMac8.chr7               60868824   0 + 169600520 C
e saiBol1.JH378108           50456189   6 +  54856640 I

a score=9006.000000
s hg38.chr15_KI270850v1_alt    316574 16 +    430880 GAAGAAATCCTTTAAG
s panPan2.chr15              80427083 16 +  99763055 GAAGAAATCCTTTAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        27737 16 -   1709092 GAAGAAATCCTTTAAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17178451 16 - 121039945 GAAGAAATCCTTTAAG
i nomLeu3.chr6              C 0 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e cebCap1.NW_016107979v1      1009526 349 +   1024465 I
e otoGar3.GL873533             432204 86 -  31380117 I
e colAng1.NW_012117110v1        23633 23 -   1784207 I
e manLeu1.NW_012106908v1          301  0 -   1397330 C
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395845  0 - 171882078 C
e rheMac8.chr7               60868824  0 + 169600520 C
e saiBol1.JH378108           50456189  6 +  54856640 I

a score=279359.000000
s hg38.chr15_KI270850v1_alt    316590 387 +    430880 AGTTTAAATGTCCCTGAAACAGGCATATACAGGCTCTAGTCAAGAATGAATTCGAGTGAAGGAAAGCTGTGTTACACCTGGCATTCCTCTGTGTTCATGGAGCTTATTTGAGGCTAGAAGATGGATTTTACCATCTAGACCTCTCTGGCTAATAGCTAGTCTTCAACCA----------TCTGACAGAGGAA-----TTCTTTTTCTTGAATGGAAAAGGCTTTAAA---------------------AATAATAACAAACATTATTATAAACAAATATATGTGAGAGTACTTAGTTGAAACAAAAAGGAATTTTAGTAGACAGTATTATACTACATTTGAAAATCAAGGAGCAGTTTATGCAACTTAAAATGTTTACAAACTGCAGCGCAATCTACTGTTTGTGAATGTCAAAGTGTCATGA
s panPan2.chr15              80427099 387 +  99763055 AGTTTAAATGTCCCTGGAACAGGCATATACAGGCTCTAGTCAAGAATGAATTCGAGTGAAGGAAAGCTGCGTGACACCTGGCATTCCTCTATGTTCATGGAGCTTATTTGAGGCTAGAAGATGGATTTTACCATCTAGACCTCTCTGGCTAATACCTAGTCTTCAACCA----------TCTGACATAGGAA-----TTCTTTTTCTTGAATGGAAAAGACTTTAAA---------------------AATAATAACAAACATTATTATAAACTAATATATGTGAGAGTACTTAGTTGAAACAAAAAGGAATTTTAGTAGACAGTATTATACTACATTTGAAAATCAAGGAGCAGTTTATGCAACTTAAAATGTTTACAAACTGCAGCGCAATCTACTGTTTGTGAATGTCAAAGTGTCATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        27753 386 -   1709092 AGTTTAAATGT-CCTGGAACAGGCATATACAGGCTCTAGTCAAGAATGAATTCGAGTGAAGGAAAGCTGTGTGACACCTGGCATTCCTCTATGTTCATGGAGCTTATTTGAGGCTAGAAGATGGATTTTACCGTCTAGACCTCTCTGGCTAATACCTAGTCTTCAACCA----------TCTGACAGAGGAA-----TTCTTTTTCTTGAATGGAAAAGACTTTAAA---------------------AATAATAACAAACATTATTATAAACAAATATATGTGAGAGTACTTAGTTGAAACAAAAAGGAATTTTAGTAGACAGTATTATACTACATTTGAAAATCAAGGAGCAGTTTATGCAACTTAAAATGTTTACAAACTGCAGCGCAATCTACTGTTTGTGACTGTCAAAGTGTCATGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17178467 362 - 121039945 AGTTTAAATGTCCCTGGAACAGGC--ATACAGGCTCTAGTCAAGAATGAATTCGAGTGAAGGAAAGCTGTGTGACACCTGGCATTCCTCTATGTTCATGGAGCTTATTTGAGGCTGGAAGATGGATTTTACCATCTAGACCTCTCTGGCTAATGCCTAGTCTTCAACCA----------TCTGACATAGGAATTTACTTCTTCTCCTTGAATGGAAAC-ACTTTAAA---------------------AATAATAAGAAATGTTATTATAAACTAATATATGTGAGAGTACTTAGTTGAAACAAAAAG---TTTTAG------------------------AAATCAAGGAGAAGTTTATGCAACTTAAAATGTTTACAAACTGCAGCGCAATCTACTGTTTGTGAATGTCAAAGTGTTATGA
i nomLeu3.chr6              C 0 C 0
s cebCap1.NW_016107979v1      1009875 413 +   1024465 AGTTTAAATGTCCCTAGAACAGGC--ATACAGGTTCTAGTCAAAAATGAATTAGAGTGCAGGAAAGCCGTGTGACACCTGGCATCCCTCTGTGTTCATGGAGCTTCTTTGAGGCTACAAGACTGATTTGACCATCCAGACTTCTCTGGCTAATACCTATTCTTCAACCACCTTGGTTACTCTGACATAGGAATTGCCTTCATTTTCTTCAATTAAAAGGACTTTAAACAACAATCACAAACAAAAAATAATAACCACAGGCATTATTATAAACGAAGATATGTGAGAGTACTAGGCTGAAACAAAAAGGAGTCTCAGTAGG-AGAATTGTACTATATTTGAAAATCA------AGTTTATGCAACTTAAAATGTTTATAGACTGCA-TGCCATCTACTGTTTGTGAATGTCAACGTAGTATCA
i cebCap1.NW_016107979v1    I 349 I 1
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             183289   0 +    584178 C
e canFam3.chr9               55250958  16 +  61074082 I
e otoGar3.GL873533             432204  86 -  31380117 I
e colAng1.NW_012117110v1        23633  23 -   1784207 I
e manLeu1.NW_012106908v1          301   0 -   1397330 C
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395845   0 - 171882078 C
e rheMac8.chr7               60868824   0 + 169600520 C
e saiBol1.JH378108           50456189   6 +  54856640 I

a score=76807.000000
s hg38.chr15_KI270850v1_alt    316977 66 +    430880 GG-AAAGTGTCTATACAATCACGGAGTTATATTTCCTCACAAAGTTCTTTACGAAGAGTGAAATATG
s panPan2.chr15              80427486 66 +  99763055 GG-AAAGTGTCTATACAATCACGGAGTTATATTTCCTCACAAAGTTCTTTATGAAGAGTGAAATATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        28139 66 -   1709092 GG-AAAGTGTCTATACAATCACAGAGTTATATTTCCTCACAAAGTTCTTTACGTAGAGTGAAATATG
i gorGor5.CYUI01015556v1    C 0 I 1
s nomLeu3.chr6               17178829 67 - 121039945 GGAAAAGTGTCTATACAATTACAGAGTTATATTTCCTCACAAAGTTCTTTACGAAGAGTGAAATATG
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378108           50456195 66 +  54856640 GA-AAAGTGTCTATGCAATCACAGAGTTCTGTCTCCTCCCCAAATTCTTTACGAAGCGTGAAATATG
i saiBol1.JH378108          I 6 I 12
s cebCap1.NW_016107979v1      1010289 66 +   1024465 GA-AAAGTGTCTGTACAATCACAGAGTTTTATTTCCTCACCAAGTTCTTTACCAAGAGTGAAATATG
i cebCap1.NW_016107979v1    I 1 C 0
e calJac3.chr10             114305364 247 - 132174527 I
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e colAng1.NW_012117110v1        23633 23 -   1784207 I
e manLeu1.NW_012106908v1          301  0 -   1397330 C
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395845  0 - 171882078 C
e rheMac8.chr7               60868824  0 + 169600520 C

a score=75206.000000
s hg38.chr15_KI270850v1_alt    317043 51 +    430880 TTTTTATACCTTTTGGTTTCAGTTAGAGGC--ATATTTTGTGTAATATTTATG
s panPan2.chr15              80427552 51 +  99763055 TTTTTATACCTCTCAGTTTCAGTTAGAGGC--ATATTTTGTGTAATATTTATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        28206 51 -   1709092 TTTTTATACCTCTCAGTTTCAGTTAGAGGC--ATATTTTGTGTAATATTTATG
i gorGor5.CYUI01015556v1    I 1 I 2
s nomLeu3.chr6               17178896 51 - 121039945 TTTTTATACCTCTCGGTTTCAGCTACAGGC--ATATTTTGTGTAATATTTATG
i nomLeu3.chr6              C 0 C 0
s calJac3.chr10             114305611 53 - 132174527 TTTTTATACCTTTCAGTCTCAGTTAGAGGTCACCATTTTGTGCAAAGATTATG
i calJac3.chr10             I 247 C 0
s saiBol1.JH378108           50456273 51 +  54856640 TTTTTATATCTCTTGGTTTTAGTCAGAGGC--ATATTTTGTGCAATATTTATG
i saiBol1.JH378108          I 12 C 0
s cebCap1.NW_016107979v1      1010355 51 +   1024465 TTTTGATATCTTTCGTTTTCAGTTAGAGGC--ATATTTTGTGCAAGATTTCTG
i cebCap1.NW_016107979v1    C 0 C 0
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e colAng1.NW_012117110v1        23633 23 -   1784207 I
e manLeu1.NW_012106908v1          301  0 -   1397330 C
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395845  0 - 171882078 C
e rheMac8.chr7               60868824  0 + 169600520 C

a score=234484.000000
s hg38.chr15_KI270850v1_alt    317094 245 +    430880 TTAATGTG------CATGATCAATGAATT------ATTTCAGTCATATGTTGCCTATATCATAA-CTGGAGGATGCTTGGGGAACAATCAACAGCTAAAACTT-CATGAAGTTCTAATGTCTGTGT-TCCAAAATACATCATATCATTAGGATGTAGGGAGAGATGTATCTGCACTCCCTGGGGTGGGC-ATTTCTAGTTACTAGACCATCTCCAC-TTTTAGCATTGGGCATCCTCATGATACTTTTATAAATATGACATT
s panPan2.chr15              80427603 246 +  99763055 TTAATGTG------CATGATCAATGAATT------ATTTCAGTCATATGTTGCCTATATCATAA-CTGGATGATGCTTGGGGAAGAATCAACAGCTAAAACTT-CATGAAGTTCTAATGTCTGTGT-TCCAAAATACATCATATCATTAGGATGTAGGGAGAGATGTATCTGCGCTCCCTGGGGTGGGC-ATTTCTAGTTACTAGACCATCTCCGCTTTTTAGCATTGGGCATCCTCATGATACTTTTATAAATATGACATT
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               17178947 245 - 121039945 TTAATGTG------CATGATCAATGAATT------ATTTCAGTCATGTGTTGCCTAAATCATAA-CTGGATGATGCTTGGGAAAGAATCAACAGCTAAAACTT-CATGAAGTTCTAATGTCTGTGT-TCCAAAATACATCATATCATTAGGATGTAGGGAGAGATGTATCTGCACTCCCTGGGGTGGGC-ATTTCTAGTTACTAGACCATCTCCAT-TTTTAGCATTTGGCATCCTCATGATACTTTTATAAATATGACATT
i nomLeu3.chr6              C 0 C 0
s calJac3.chr10             114305664 258 - 132174527 GTAATGTGTCTTTACATTATGAATGAATTTCTTTCAGTTCAGTCAGTC-TTGCATAAATCATAACCTTTATGATGC-TGGGACAGAATCAACAGTTGAAACTTCCAAGAAGTTCTAATGTCCATGTACCCAAAATATGTCCCATTGTTAGGATGGAGGGAGATATGCAGGTGTGCTCCCTGAAGGGGGAGATTCCTAGTTACT-GACCATCTCCAC-ATTTAGCATTTGGCATCTTCATGATACTTTCATAAATATGGCATT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           50456324 248 +  54856640 GTAATGTGCCTATACATTCTGAATGAATT------ATTTCAGTGATACATAGCCTACCTCATAA-CTTTATGATGCTTGAGAAAGAATAAACAGTTAAAACTT-CATGACGTTCTAATGCTTTTGT-TCCAAAATAAGGCCCATGATTAGGATGTAGGGAGATATGTATGTGTGCTTCCTGGGGTGGGC-ATTTCTAGTTACTAGACCGTCTCCAT-TTTTAGCATTTGGCCTTCTC---ATACTTTCATAAATATGCCATT
i saiBol1.JH378108          C 0 I 497
s cebCap1.NW_016107979v1      1010406 250 +   1024465 TTAATGTGCCTCTACATTATGAATGAATT------CTTTCAGTCAGGCATTGCCTAAATCATAA-CTTTATGATGTTTGGGACAGAATCAACAGTTGAGACTT-CATGAAGTTCTAATGTCTGTGT-GCCAAAATACGTCCCATTGTTAGGATGGAGGGACATATGTATGTGTGCTCCCTGAAGTGGAG-ATTCCTAGTTACT-GACCATGTCCAT-GTTTAGCATTTGGCATCCTCATGATACTTTCATAAATATGACATT
i cebCap1.NW_016107979v1    C 0 C 0
e dasNov3.JH564958             183289   0 +    584178 C
e canFam3.chr9               55250958  16 +  61074082 I
e otoGar3.GL873533             432204  86 -  31380117 I
e colAng1.NW_012117110v1        23633  23 -   1784207 I
e manLeu1.NW_012106908v1          301   0 -   1397330 C
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395845   0 - 171882078 C
e rheMac8.chr7               60868824   0 + 169600520 C
e gorGor5.CYUI01015556v1        28257   2 -   1709092 I

a score=124041.000000
s hg38.chr15_KI270850v1_alt    317339 114 +    430880 AATAGGAGATCAATAATACGATTTTACAGATTGAATAAGAGAATTGCCTGCATTCACTTAAAGATTGCAAATATTGAGCCCTTGTGACTTCAACTGACTCTTCCAAATTGTATG
s panPan2.chr15              80427849 114 +  99763055 AATAGGAGATCAATAATACGATTTTACAGATTGAATAAGAGAATTGCCTGCATTCACTTAAAGATTGCAAATATTGAGCCCTTGTGACTTCAACTGACTCTTCCAGATTGTATG
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               17179192 114 - 121039945 AATAGGAGATCAATAATAGGATTTTACAGATTGAATAAGAGAATTGCCTGCATTCACTGAAAGAGTGCAAATATTGAGCCCTTGTGACTTCAACTGACTCTTCCAAATTGTATG
i nomLeu3.chr6              C 0 C 0
s calJac3.chr10             114305922 114 - 132174527 AATAGGAGAGCACTCATACAATTTGACAGATGGAATAACACATTTGCCTGCATTCCCTGAAAGAGTACAAATATTGGGTCCTGGTGATTTGAACTGACTCTTCCAAATTGTAGG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           50457069 114 +  54856640 aataaCAGAGCAATAATATGATTGTACAGATGGAATAACAGATTTGCCTGCATTCACTGAAAGAGTGCGAATATTGGGTCCTGGTGACTTCAACGGACTCTTCTAAATTGTACG
i saiBol1.JH378108          I 497 C 0
s cebCap1.NW_016107979v1      1010656 114 +   1024465 AATAGGAGAGCACTAATATGATTTTACAGATGGAATAACACATTTGCCTGCATTCCCTGAAAGAGTATAAATATTGGGTCCTAGTGACTTGAACTGACTCTTCCAAATTGTAGG
i cebCap1.NW_016107979v1    C 0 I 232
e dasNov3.JH564958             183289   0 +    584178 C
e canFam3.chr9               55250958  16 +  61074082 I
e otoGar3.GL873533             432204  86 -  31380117 I
e colAng1.NW_012117110v1        23633  23 -   1784207 I
e manLeu1.NW_012106908v1          301   0 -   1397330 C
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395845   0 - 171882078 C
e rheMac8.chr7               60868824   0 + 169600520 C
e gorGor5.CYUI01015556v1        28257   2 -   1709092 I

a score=10445.000000
s hg38.chr15_KI270850v1_alt    317453 8 +    430880 AATTTATC
s panPan2.chr15              80427963 8 +  99763055 AATTTATC
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               17179306 8 - 121039945 AATTTATC
i nomLeu3.chr6              C 0 C 0
s calJac3.chr10             114306036 8 - 132174527 GATTTATC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           50457183 8 +  54856640 AATTTATC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1011002 8 +   1024465 AATTTATC
i cebCap1.NW_016107979v1    I 232 C 0
e dasNov3.JH564958             183289 0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e colAng1.NW_012117110v1        23633 23 -   1784207 I
e manLeu1.NW_012106908v1          301 0 -   1397330 C
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395845 0 - 171882078 C
e rheMac8.chr7               60868824 0 + 169600520 C
e gorGor5.CYUI01015556v1        28257 2 -   1709092 I

a score=67460.000000
s hg38.chr15_KI270850v1_alt    317461 44 +    430880 AATGTATTAGAGAAACTCAGTTTCAGAATGATAAAGAAAAACTG
s panTro5.chr15              63470799 44 +  83230942 AATGTATTAGATAAACTCAGTTTCAGAATGATAAAGAAAAACTG
i panTro5.chr15             N 0 C 0
s panPan2.chr15              80427971 44 +  99763055 AATGTATTAGATAAACTCAGTTTCAGAATGATAAAGAAAAACTG
i panPan2.chr15             C 0 C 0
s nomLeu3.chr6               17179314 44 - 121039945 AATGTATTAGGTAAACTCAGTTTCAGAATGATAAAGAAAAACTG
i nomLeu3.chr6              C 0 M 100
s calJac3.chr10             114306044 44 - 132174527 AATGTATCAGATAAACCCAGTTTCAGAACGATCAAGGAGAAACG
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           50457191 44 +  54856640 AATGTATCAGATAAACCCAATTTCAGAATTATCAAGACAAAGTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1011010 44 +   1024465 AATGTATTAGATAAATCCAGTTTCAGAATGATCAAGGAATAATG
i cebCap1.NW_016107979v1    C 0 C 0
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e colAng1.NW_012117110v1        23633 23 -   1784207 I
e manLeu1.NW_012106908v1          301  0 -   1397330 C
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395845  0 - 171882078 C
e rheMac8.chr7               60868824  0 + 169600520 C
e gorGor5.CYUI01015556v1        28257  2 -   1709092 I

a score=55509.000000
s hg38.chr15_KI270850v1_alt    317505 53 +    430880 TTAGACCAAGCAATGTGGCTAATTAACAGTGGTAGGATTTCCAGCCCAAGGGT
s panTro5.chr15              63470843 53 +  83230942 TTAGACCAAATAATGTGGCTAATTAACAGTGGTAGGATTTCCAGCCCAAGGGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80428015 53 +  99763055 TTAGACCAAATAATGTGGCTAATTACCAGTGGTAGGATTTCCAGCCCAAGGGT
i panPan2.chr15             C 0 C 0
s calJac3.chr10             114306088 52 - 132174527 TTAGACCAAATAATGCGGCTAATTAACAGTGGCATGATTTCTAG-CCGGGGGC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           50457235 52 +  54856640 TTAGACCAAATAATGTGGCTAATGAACAGTGGTACAATTTCTAG-CCTGAGGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1011054 53 +   1024465 TTAGACAAAATAATGTGGCAGATTAACAGTGGTACGATTTCTAGCCCGGGGGT
i cebCap1.NW_016107979v1    C 0 C 0
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e colAng1.NW_012117110v1        23633 23 -   1784207 I
e manLeu1.NW_012106908v1          301  0 -   1397330 C
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395845  0 - 171882078 C
e rheMac8.chr7               60868824  0 + 169600520 C
e nomLeu3.chr6               17179358 100 - 121039945 M
e gorGor5.CYUI01015556v1        28257  2 -   1709092 I

a score=13377.000000
s hg38.chr15_KI270850v1_alt    317558 7 +    430880 TTAAAAT
s panTro5.chr15              63470896 7 +  83230942 TTAAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80428068 7 +  99763055 TTAAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        28259 7 -   1709092 TTAAAAT
i gorGor5.CYUI01015556v1    I 2 C 0
s calJac3.chr10             114306140 7 - 132174527 TTAAAAT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           50457287 7 +  54856640 TTAAAAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107979v1      1011107 7 +   1024465 TTAAAAT
i cebCap1.NW_016107979v1    C 0 C 0
e dasNov3.JH564958             183289 0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e colAng1.NW_012117110v1        23633 23 -   1784207 I
e manLeu1.NW_012106908v1          301 0 -   1397330 C
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395845 0 - 171882078 C
e rheMac8.chr7               60868824 0 + 169600520 C
e nomLeu3.chr6               17179358 100 - 121039945 M

a score=53924.000000
s hg38.chr15_KI270850v1_alt    317565 40 +    430880 GGACTTAAGGTCCTGTTCT-TGCCTTTTATTTTCTGAACTT
s panTro5.chr15              63470903 40 +  83230942 GGACTTAAGGTCCTGTTCT-TGCCTTTTATTTTCTGAACTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80428075 40 +  99763055 GGACTTAAGGTCCTGTTCT-TGCCTTTTATTTTCTGAACTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        28266 35 -   1709092 GGACTAAAGGTCCTGTTCT-TGCC-----TTTTCTGAACTT
i gorGor5.CYUI01015556v1    C 0 C 0
s colAng1.NW_012117110v1        23656 40 -   1784207 GGACTTAAAGTCCTGTTCT-TGCCTTTTATTTTCTGAACTT
i colAng1.NW_012117110v1    I 23 C 0
s calJac3.chr10             114306147 38 - 132174527 GGACTTAAAGTTCTGTTTTGTGTTTT---ATTTCTGAACTT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           50457294 32 +  54856640 GGACTTAAAATTAC------CGTCTT---TAAACTGAACTC
i saiBol1.JH378108          C 0 I 48
s cebCap1.NW_016107979v1      1011114 38 +   1024465 GGACTTAAAGTTCTGTTCTGTGTTTT---ATTCCTGAGCTT
i cebCap1.NW_016107979v1    C 0 C 0
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e manLeu1.NW_012106908v1          301  0 -   1397330 C
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395845  0 - 171882078 C
e rheMac8.chr7               60868824  0 + 169600520 C
e nomLeu3.chr6               17179358 100 - 121039945 M

a score=74457.000000
s hg38.chr15_KI270850v1_alt    317605 40 +    430880 GCTGCTTTTGCATTCTTTGAGTTCAGTTTAAAGACAGTTC
s panTro5.chr15              63470943 40 +  83230942 GCTGCTTTTGCATTCTTTGAGTTCAGTTTAAAGACAGTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80428115 40 +  99763055 GCTGCTTTTGCATTCTTTGAGTTCAGTTTAAAGACAGTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        28301 40 -   1709092 GCCGCTTTTGCATTCTTTGAGTTCAGTTTAAAGACAGTTA
i gorGor5.CYUI01015556v1    C 0 C 0
s colAng1.NW_012117110v1        23696 40 -   1784207 GCTGCTTTTGCATTCTTTGAGTTCAGTTTAAAGACAGTTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114306185 40 - 132174527 GCCGCTTTTGCATTCTTTGAGTTCAGTTTAAAGACAGTTA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1011152 40 +   1024465 GCCGCTTTTGCATCCTTTGAGTTCAGTTTAAAGACAGGTA
i cebCap1.NW_016107979v1    C 0 C 0
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e manLeu1.NW_012106908v1          301  0 -   1397330 C
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395845  0 - 171882078 C
e rheMac8.chr7               60868824  0 + 169600520 C
e nomLeu3.chr6               17179358 100 - 121039945 M
e saiBol1.JH378108           50457326 48 +  54856640 I

a score=40128.000000
s hg38.chr15_KI270850v1_alt    317645 21 +    430880 CTTTAAGTCCATTTTAAACCC
s panTro5.chr15              63470983 21 +  83230942 CTTTAAGTCCATTTTAAACCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80428155 21 +  99763055 CTTTAAGTCCATTTTAAACCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        28341 21 -   1709092 CTTTAAGTCCATTTTAAACCC
i gorGor5.CYUI01015556v1    C 0 C 0
s colAng1.NW_012117110v1        23736 21 -   1784207 CTTTAAGTCTGTTGCAAACCC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114306225 21 - 132174527 CTCTAAGTCCATTTTCAACCC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           50457374 21 +  54856640 CTTTACGTCCATGTGGAAACC
i saiBol1.JH378108          I 48 C 0
s cebCap1.NW_016107979v1      1011192 21 +   1024465 CTCTAAGTCCATTTTCAGCCC
i cebCap1.NW_016107979v1    C 0 C 0
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e manLeu1.NW_012106908v1          301  0 -   1397330 C
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395845  0 - 171882078 C
e rheMac8.chr7               60868824  0 + 169600520 C
e nomLeu3.chr6               17179358 100 - 121039945 M

a score=110403.000000
s hg38.chr15_KI270850v1_alt    317666 45 +    430880 TCAGGCTAGAAGTCATACCACTGTTAATTAGCCACATTATTTGAT
s panTro5.chr15              63471004 45 +  83230942 TCAGGCTAGAAGTCGTACCACTGTTAATTAGCCACATTATTTGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80428176 45 +  99763055 TCAGGCTAGAAGTCGTACCACTGTTAATTAGCCACATTATTTGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        28362 45 -   1709092 TCAGGCTAGAAATCAAACCACTGTTAATTAGCCACATTATTTGGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17179458 45 - 121039945 TCGGGCTACAAATCCTACCACTGTTAATTAGCCACATTATTTGGT
i nomLeu3.chr6              M 100 C 0
s colAng1.NW_012117110v1        23757 44 -   1784207 TCAGGCTGGAAATGGTACCACTGTTAATTAG-CGCCTTATTTGGT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114306246 45 - 132174527 TCGGGCTAGAAATCGTACCCCTGTTAATCAGCCACATTATTTTGT
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           50457395 45 +  54856640 TCAGGCTAGAAATCCTACCACTCTTAATTAGCCACATTACTTGGT
i saiBol1.JH378108          C 0 I 1
s cebCap1.NW_016107979v1      1011213 38 +   1024465 TCGGGCTAGAAAT-------CTGTTAATCAGACACATTATTTGGT
i cebCap1.NW_016107979v1    C 0 C 0
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e manLeu1.NW_012106908v1          301  0 -   1397330 C
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395845  0 - 171882078 C
e rheMac8.chr7               60868824  0 + 169600520 C

a score=147133.000000
s hg38.chr15_KI270850v1_alt    317711 65 +    430880 CTAACAGTTTTTCTTTATCATTCTGAAACTGGGTTTACCGAATACATTGATAAATTATTTCAAAG
s panTro5.chr15              63471049 65 +  83230942 CTAAGAGTTTTTCTTTATCATTCTGAAACTGGGTTTACCTAATACATTGATAAATTATTTCAAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80428221 65 +  99763055 CTAAGAGTTTTTCTTTATCATTCTGAAACTGGGTTTACCTAATACATTGATAAATTATTTCAAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        28407 65 -   1709092 CTAACAGTTTTTCTTTATCATTCTGAAACTGAGTTTATCTAATACATTGATAAATTATTTCCAAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17179503 65 - 121039945 CTAACAGTTTTTCTTTATCATTCTGAAACTGGATTTACCTAATAGATTGACAAATTATTTCAAGG
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012117110v1        23801 65 -   1784207 CTAACAGTTTTTCTTTAAAATTCTGAAACTGAGTTTACCTAATACATTGATAAATTACTTCAAAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114306291 65 - 132174527 CTAACAGTTTTTCTTAATCATTCTGAAACTGGGTTTATCTAATACATTGATAAATTATTTCAAAG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1011251 65 +   1024465 GGAACAGTTTTTCTTAATCATTCTGAAACTGGGTTTATCTAATACATTGATAAATTATTTCAAAG
i cebCap1.NW_016107979v1    C 0 C 0
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e manLeu1.NW_012106908v1          301  0 -   1397330 C
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e macFas5.chr7              108395845  0 - 171882078 C
e rheMac8.chr7               60868824  0 + 169600520 C
e saiBol1.JH378108           50457440  1 +  54856640 I

a score=72767.000000
s hg38.chr15_KI270850v1_alt    317776 18 +    430880 GTATTTTTATAGTTCAAA
s panTro5.chr15              63471114 18 +  83230942 GTATTTTTATAGTTCAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80428286 18 +  99763055 GTATTTTTATAGTTCAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        28472 18 -   1709092 GTATTTTTAGAGTTCAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17179568 18 - 121039945 GTATTTTTATAGTTCAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60868824 18 + 169600520 GTATTTTGACAGTTCAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108395845 18 - 171882078 GTATTTTGACAGTTCAAA
i macFas5.chr7              C 0 C 0
s manLeu1.NW_012106908v1          301 18 -   1397330 GTATTTTGACAGTTCAAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        23866 18 -   1784207 GAATTTTTATAGTTCAAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114306356 18 - 132174527 GGATTTTGATAGTTCAAA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1011316 18 +   1024465 GTCTTTTGATAGTTCAAA
i cebCap1.NW_016107979v1    C 0 C 0
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e chlSab2.chr29              21083325 1383 -  24206276 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e saiBol1.JH378108           50457440  1 +  54856640 I

a score=114044.000000
s hg38.chr15_KI270850v1_alt    317794 24 +    430880 TCACTTCACTTTTACCCTGACACG
s panTro5.chr15              63471132 24 +  83230942 TCACTTCACTTTTACCCTGACACG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80428304 24 +  99763055 TCACTTCACTTTTACCCTGACACG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        28490 24 -   1709092 TCACTTCACTTTTACCCTGACACA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17179586 24 - 121039945 TCACTTCACTTTTACCCTGACACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60868842 23 + 169600520 TCACTTCACTTTTA-CCTGACACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108395863 23 - 171882078 TCACTTCACTTTTA-CCTGACACA
i macFas5.chr7              C 0 C 0
s chlSab2.chr29              21084708 23 -  24206276 TCACTTCACTTTTA-CCTGACACA
i chlSab2.chr29             I 1383 C 0
s manLeu1.NW_012106908v1          319 23 -   1397330 TCACTTCACTTTTA-CCTGACACA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        23884 24 -   1784207 TCACTTTACTTTTACCCTGACACA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114306374 24 - 132174527 TCACTTCACTTTAACCCTAAGAAA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1011334 24 +   1024465 TCACTTCACTTTTACCCTAAGAAA
i cebCap1.NW_016107979v1    C 0 C 0
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e macNem1.NW_012011056v1        67938 16627 +   6271500 I
e saiBol1.JH378108           50457440  1 +  54856640 I

a score=1170546.000000
s hg38.chr15_KI270850v1_alt    317818 198 +    430880 TATAAATGACTAGGAATGACCTTCGGATAGCGTTTAGCATCTGTAACCAATCTGACAATAATGTGTTCATCAGGTACCTATGGATTAAATCACATACAGGCATATTTAAGCTGAACGTCAGTCTGAAAAATAAATGTACTA-TATTAACTGAAATACCACTCTTCATGTAGGTATTTTGTCATATGTTTAAGAAAAAGC
s panTro5.chr15              63471156 199 +  83230942 TATAAATGACTAGGAATGACCTTCAGATAGCGTTTAGCATCTGTAACCAATCTGACAATAATGTGTTCATCAGGTACCTATGGATTAAATCACATACTGGCATATTTAAGCTGAATGTCAGTCTGAAAAATAAATGTACTAATATTAACTCAAATACCACTCTTTATGTAGGTATTTTGTCATATGTTTAAGAAAAAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80428328 199 +  99763055 TATAAATGACTAGGAATGACCTTCAGATAGCGTTTAGCATCTGTAACCAATCTGACAATAATGTGTTCATCAGGTACCTATGGATTAAATCACATACTGGCATATTTAAGCTGAATGTCAGTCTGAAAAATAAATGTACTAATATTAACTCAAATACCACTCTTTATGTAGGTATTTTGTCATATGTTTAAGAAAAAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        28514 198 -   1709092 TATAAATGACTAGGAATGACCTTCAGATAGCGTTTAGCAACTGTAACCAATCTGACAATAATGTGTTCATCAGGCACCTGTGGATTAAATCACATACTGGCATATTTAAGCTGAATGTCAGTCTGAAAAATAAATGTACTA-TATTAACTCAAATACCACTCTCTGTGTAGGTATTTTGTCATATGTTTAAGAAAAAGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17179610 193 - 121039945 TATAAATGACTAGGAATGACCTTCAGATAGCCTTTAGCATCTGTAACCAATCTGACAATAATGTGTTCATCAGGTACCTATGGATTAAATCACATACGGGCATATTTAAGCTCAATGTCAGTTTGAA----AAATGTACTA-TATTAACTGAAATACCACTCTTTGTGTAGGTATTTTGTCATATGTTTAA-AAAAAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60868865 198 + 169600520 TATAAATGACTAGGAATGACCTTCAGATAGTGTTTAGCATCTGTAACCTATCTGACAATAATGTGTTCATCAGGGACCTCTGGATTAAATCACATACCGGCATATTTAAGCTGAATGTCAGTCTGAAAAATAAAAGTGCTA-TATTAACTGAAATACCACTCTTTGTGTAGGAATTTTGTCATATGTTTAAGAAAAAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108395886 198 - 171882078 TATAAATGACTAGGAATGACCTTCAGATAGTGTTTAGCATCTGTAACCTATCTGACAATAATGTGTTCATCAGGGACCTCTGGATTAAATCACATACCGGCATATTTAAGCTGAATGTCAGTCTGAAAAATAAAAGTGCTA-TATTAACTGAAATACCACTCTTTGTGTAGGAATTTTGTCATATGTTTAAGAAAAAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        84565 197 +   6271500 TATAAATGACTAGAAATGACCTTCAGATAGCATTTAGCATCTGTAACCAATCTGACAATAATGTGCTCATCAGGTACCTATGGATTAAATCACATACTGGCATATTCAAACTGAATGTCAATCTG-GAAATAAATTTACTA-TATTAACTGAAATACCACTCTTTGTGTAAGTATTTTGTCATATATTTAAGAAATAGC
i macNem1.NW_012011056v1    I 16627 C 0
s chlSab2.chr29              21084731 198 -  24206276 TATAAATGACGAGGAATGACCTTCAGATAGTGTTTAGCATCTGTAACCTATCCGACAATAATGTGTTCATCAGAGACCTCTGGATTAAATCACATACTGGCATATTTAAGCTGAATGTCAGTCTGAAAAATAAATGTGCTA-TATTAACTGAAATACCACTCTTTGTGTAGGAATTTTGTCATATGTTTAAGAAAAAGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1          342 198 -   1397330 TATAAATGACTAGGAATGACCTTCAGATAGTGTTTAGCATCTGTAACCTATCTGACAATAATGTGTTCATCAGGGACCTCTGGATTAAATCACATACCGGCATATTTAAGCTGAATGTCAGTCTGAAAAATAAAACTGCTA-TATTAACTGAAATACCACTCTTTGTGTAGGAATTTTGTCATATGTTTAAGAAAAAGC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        23908 185 -   1784207 TATAAATGACTAGGAATGACCTTCAGATCGCGTTTAGCATCTGTAACTAAACTGATAATAATGTGTTCATGGGGTACCTATGGATTAAATCACACACTGACATATTTAAGCTGAATGTCAGTCTGGAAAATAAATGTACTA-TATTAACTGAAATATCACTC-------------TTTGTCATATGTTTAAGAAAAAGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114306398 194 - 132174527 TACAAATTACTAGGAATGACCTTCAGATAGTGTTTAGCATCTGTACCCAATCTGATGATAACGTGTTCATCAGGTACCTGTGCAGTAAATCCCATACAGGCATGTTTAAGCTGAATGGCAGTCTGGAAAATACATTTAC---TATTAACCGAAATATCACTC--TGAGTAGGTATTTTGTCATCTATTTAAGAAAAATC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1011358 195 +   1024465 TATAAATGACTAGGAATGACCTTGACATAGTGTTTAGCGTCTGTACCCAATCTGACAATAATGCGTTCCTCAGGTTCCTGTGGAGTAAATCACATACAGGCATATTT-AGCTGAATGTCAGTCTGGAAAATACATTTACTA-TATTAACTGAAATATCACTC--TGTGTAGGTATTTTGTCATCTATTTAAGAAAAATC
i cebCap1.NW_016107979v1    C 0 C 0
e dasNov3.JH564958             183289   0 +    584178 C
e canFam3.chr9               55250958  16 +  61074082 I
e otoGar3.GL873533             432204  86 -  31380117 I
e cerAty1.NW_012002657v1         2816 1920 -   1987038 I
e saiBol1.JH378108           50457440   1 +  54856640 I

a score=404474.000000
s hg38.chr15_KI270850v1_alt    318016 60 +    430880 TAAAAAGAATGGAAATCATGTGACAATAACTTAAGTCTTCCTTCAAAGTGCATGC-AGTCT
s panTro5.chr15              63471355 60 +  83230942 TAAAAAGAATGGAAATCATGTGACAATAACTTATGTCTTTCTTCAAAGTGCATGC-GGTCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80428527 60 +  99763055 TAAAAAGAATGGAAATCATGTGACAATAACTTAAGTCTTCCTTCAAAGTGCATGC-AGTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        28712 60 -   1709092 TAAAGAGAATGGAAATCCTGTGACAATAACTCAAGTCTTTCTTCAAAGTGCGTGC-AGTCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17179803 60 - 121039945 TAAAGAGAACGGAAATCGTGTGACAATAACTTAAGTCTTTCTTCAAAGTGCATGC-AGTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60869063 60 + 169600520 TAAAAAGAATGGAAATTCTATGACAATAACTTTAGTCTTTCTTCAAAGTGCATGC-AGTCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108396084 60 - 171882078 TAAAAAGAATGGAAATTCTATGACAATAACTTTAGTCTTTCTTCAAAGTGCATGC-AGTTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011056v1        84762 60 +   6271500 TAAAAAGAATGGAAATCCTATGATAATAACTTAAGTCTTTCTTCAAAGTGCATGC-ACTCT
i macNem1.NW_012011056v1    C 0 N 0
s cerAty1.NW_012002657v1         4736 60 -   1987038 TAAAAAGAATGGAAATTCTATGACAATAACTTTAGTCTTTCTTCAAAGTGCATGC-AGTCG
i cerAty1.NW_012002657v1    I 1920 C 0
s chlSab2.chr29              21084929 60 -  24206276 TAAAAAGAATGGAAATCCTATGACAATAACTTAAGTCTTTTTTCAAAGTGCATGC-AGTCG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1          540 60 -   1397330 TAAAAAGAATGGAAATTCTATGACAATAACTTTAGTCTTTCTTCAAAGTGCATGC-AGTCG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        24093 59 -   1784207 TAAAAAGAATGG-AATTGTATGATAATAACTTAAGTCTTTCTTCAAAGCGCATGC-AGTCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114306592 60 - 132174527 T-AAAAGAACGGAAATCACATGACAGTGACTTAAGTCTTTCTTCAAAGTGCACGTGAGTCT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1011553 61 +   1024465 TAAAAAGAATGGAAGTCATATGACAGTGACTTAAGCCTTTCTTCAAAGTGCATGCGAGTCC
i cebCap1.NW_016107979v1    C 0 C 0
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e saiBol1.JH378108           50457440  1 +  54856640 I

a score=747615.000000
s hg38.chr15_KI270850v1_alt    318076 94 +    430880 TTTGCAGTACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTATAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAG
s panTro5.chr15              63471415 94 +  83230942 TTTGCAATACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTATAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80428587 94 +  99763055 TTTGCAGTACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTATAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        28772 93 -   1709092 CTTGCAGTACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTATAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGG-TAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17179863 94 - 121039945 TTTGCAATACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTAAAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGATTAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60869123 94 + 169600520 TTTGCAATACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTATAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108396144 94 - 171882078 TTTGCAATACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTATAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1         6598 94 -   2311642 TTTGCAATACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTATAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAG
i macNem1.NW_012011945v1    N 0 C 0
s cerAty1.NW_012002657v1         4796 94 -   1987038 TTTGCAATACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAGTATAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTAAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21084989 94 -  24206276 TTTGCAATACCTCATTCAGCCAACTATTTGTTCTCTTCCTCATTCAGTATTAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1          600 94 -   1397330 TTTGCAATACCTCATTCAGCCAAGTATTCGTTCTCTTCCTCATTCAGTATAAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        24152 93 -   1784207 -TTGCAATACCTCATTCAGTCAAGTATTTGTTCTCTTCCTCATTCAGTATTAGGCAGCTTTCAATTTGCTTAGAAGGCAACATTAGAAGGTTAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114306652 94 - 132174527 CCTGAAGTACTTCATTCAGCCAAGTGTCTGTTCTCTTCCTCATTCAGTAGAAGGCAGCTTTCAATTGGCTTAGAAGGCAACATCAGAAGGTTAG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1011614 94 +   1024465 TTTGCAGTACTTCATTCAGCCAAGTATTTGTTCTCCTCCTCATTCAGTAGAAGGCAGCTTTCAATTGGCTTAGAAGGCAACATCAGAAGGTTAG
i cebCap1.NW_016107979v1    C 0 I 1151
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e saiBol1.JH378108           50457440  1 +  54856640 I

a score=77698.000000
s hg38.chr15_KI270850v1_alt    318170 14 +    430880 AGTTCATCAGAAAC--
s panTro5.chr15              63471509 14 +  83230942 AGTTCATCAGAAAC--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80428681 14 +  99763055 AGTTCATCAGAAAC--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        28865 14 -   1709092 AGTTCATCAGAAAC--
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17179957 14 - 121039945 AGATCATCAGAAAC--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60869217 14 + 169600520 AGTTAATCAGAAAC--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108396238 14 - 171882078 AGTTAATCAGAAAC--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1         6692 14 -   2311642 AGTTAATCAAAAAA--
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         4890 14 -   1987038 AGTTAATCAGAAAC--
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21085083 14 -  24206276 AGTTAATCAGAAAC--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1          694 14 -   1397330 AGTTAATCAGAAAC--
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        24245 14 -   1784207 AGTTAATCAGAAAC--
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114306746 16 - 132174527 CGTTCATCAAAAACAC
i calJac3.chr10             C 0 C 0
e dasNov3.JH564958             183289  0 +    584178 C
e canFam3.chr9               55250958 16 +  61074082 I
e cebCap1.NW_016107979v1      1011708 1151 +   1024465 I
e otoGar3.GL873533             432204 86 -  31380117 I
e saiBol1.JH378108           50457440  1 +  54856640 I

a score=3766651.000000
s hg38.chr15_KI270850v1_alt    318184 554 +    430880 A-GAATTTTAAAATATGAGTTCAACTGAATAAATGTGAATTTCTGTAGGAAGTAAAGAATCAAAATACCTATCTAAAGATGGCAATATATAATAATTATTTTTAAAGTATTTGATTAAACCAGATAGGTTTTCTCGAAATG-AA-AAAAATCAGTTCTAAAACCAAAGATGATTTTTTGAAAATGTGAAAATGTAAATCAG-----CCCTATCCATAATATAATTTCTCTAAAACTGTATCT------GTCATTTT-AAAATAATATAACTATTAAAAAATGTAACTGCTATCTTATTGTTTTGAAATAAGTTAAAACATTTT-AAATATGAATACTGCAGTTTAAAAGAAAGAAA-CCAGGGGAAGGAAAAGTAGAGaaagaaatgccaattccagtccaaagctttatttgccaagttttcttagaatgacttttacctatttatgaattcttacaaaca--gaatgtataatggaaatactgact--------------------tttgcctaaagtggcATTGTTGACTGCTGT---GATGTTACTGTAATGTAATAAATTATTAAATTGTTGC---------------------------AAAGTGCTGTTTTTGCCT
s panTro5.chr15              63471523 551 +  83230942 G-GAATTTTAAAATATGAGTTCAACTGAATAAATGTGAATTTCTATAGGAAGTAAAGAATCAAAATACCTATCTAAAGATGGCAATATATAATAATTATTTTTAAAGTATTTGATTAAACCGGATAGGTTTTCTCGAAATG-AA-AAAAATCAGTTCTAAAACCAAAGATGATTTTTTGAAAATGTGAAAATGTAAACCAG-----CCCTATCCATAATATAATTTCTCTAAAACTGTATCT------GTCATTTT-AAAATAATATAACTGTTAAAAAATGTAACTGCTATCTTAATGTTTTGAAATAAGTTAAAACATTTT-AAATATGAATACTGCAGTTTAAAAGAAAGAAA-CCAGGGGAAGGAAAAGTAGAGaaagaaatgccaattccagtccaaagctttatttgccaagttttcttagaatgacttttacctatttatgaattcttacaaaca--gaatgtataatggaaatactgact--------------------tttgcctaaagtggcATTGTTGACTGCTGT---GATGTTACTGTAATGTAATAAATTA---AATTGTTGC---------------------------AAAGTGCTGTTTTTGCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80428695 551 +  99763055 G-GAATTTTAAAATATGAGTTCAACTGAATAAATGTGAATTTCTATAGGAAGTAAAGAATCAAAATACCTATCTAAAGATGGCAATATATAATAATTATTTTTAAAGTATTTGATTAAACCGGATAGGTTTTCTCGAAATG-AA-AAAAATCAGTTCTAAAACCAAAGATGATTTTTTGAAAATGTGAAAATGTAAACCAG-----CCCTATCCATAATATAATTTCTCTAAAACTGTATCT------GTCATTTT-AAAATAATATAACTGTTAAAAAATGTAACTGCTATCTTAATGTTTTGAAATAAGTTAAAACATTTT-AAATATGAATACTGCAGTTTAAAAGAAAGAAA-CCAGGGGAAGGAAAAGTAGAGaaagaaatgccaattccagtccaaagctttatttgccaagttttcttagaatgacttttacctatttatgaattcttacaaaca--gaatgtataatggaaatactgact--------------------tttgcctaaagtggcATTGTTGACTGCTGT---GATGTTACTGTAATGTAATAAATTA---AATTGTTGC---------------------------AAAGTGCTGTTTTTGCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        28879 554 -   1709092 A-GAATTTTAAAATATGAGTTCAACTGAATAAATTTGAATTTCTGTAGGAAGTAAAGAATCAAAATACCTATCTAAAGACTGCAATATATAATAATTA-TTTTAAAGTATTTGATTAAACCGGATAGGTTTTCTCGAAATGAAA-AAAAATCAGTTCTAAAACCAAAGATGATTTTTTGAAAATGTGAAAATGTAAATCAG-----CTCTATCCATAATATAATTTCTCTAAAACTTTATCT------GTCATTTT-AAAATAATATAACTATTTAAAAATGTAACTGCTATCTTAATGTTTTGAAATAAGTTAAAACATTTT-AAATATGAAAACTGCAGTTTAAAAGAAAGAAA-CCAGGGGAAGGAAAAGTAGAGaaagaaatgccaattccagtccaaagctttatttgccaagttttcttagaatgacttttacctatttatgaatgcttacaaaca--gaatgtataatggaaatactgact--------------------tttgcctaaagtggcATTGTTGACTGCTGT---GATGTTACTGTAATGTAATAAATTATTAAATTGTTGC---------------------------AAAGTGCTGTTTTTGCCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17179971 556 - 121039945 A-GAATTTTAAAATGTGAGTTTAACTGAATAAATGTGAATTTCTGTAGGAAGTAAAGAATCAAAACACCTATCTAAAGACTGCAATATAGGATAATTATTTTTAAAGTATTTGATTAAACCTGATAGGTTTTCTCGAAATG-AA-AAAAATCAGTTCTAAAACCAAAGGTAATTTTTTGAAAATGTGAAAATGTAAATCAG-----CCCTATCCATAATATAATTTCTCTAAAACTTTATCTT----AGTCATTTT-AAAATAATATAACCATTCAAAAATGTAACTGCTATCTTCATGTTTTGAAATAAGTTAAAACATTTT-AAATATGAATACTGTAGTTTAAAAGAAAGAAA-CCAGGGGAAGGAAAAGTAGAGAAAGAAATGCCAATTCCAGTCCAAAGCTTTATTTGCCAAGTTTTCTTAGAATGACTTTTACCTATTTATGAATTCTTACAAACA--GAATGTATAATGGAAATACTGACT--------------------TTTGCCTAAAGTGGCATTGTTGACTGCTGT---GATGTTACTGTAATGTAATAAATTATTAAATTGTTGC---------------------------AAAGTGCTGTTTTTGCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60869231 567 + 169600520 ATAAAATCTAAAATGTGAGTTCAACTGAATAAATTTGAATTTCTGTAGG-----AAGAATCAAAATACCTATTTAAAGATTGCAATATATGATAATCATTTTTAAAGTATTTGATTAAACTT--TAGGTTTTCCAGAAATG-AA-AAAAATCAATTCTAAAACCAAAGCTGATTTTTAGAAAATGTGAAAATGTAAATCAG-----CCCTATCCATAATAGAGTTTCTCTAAAACTTTATGTT----AGTCATTTT-TAA-----ATAACTATTCAAAAATGTAACTGCTATCTTAATGTTTTGAAATAAGTTAAAACATTTT-AAATATGAATACTATAGTTTAAAAAAAAAGAAACTAGGGGAAGGAAAAGTAGAGaaagaaacgccaattccagtccaaagctttatttgccaagttttcttagaatgacttttaccaatttatgaattcttataaacattgaatatat-atggaaatactgaATCATATAATGGAAATATTGAATTTGCCTAAAGTGGCATTGTTGACTGCTGC---GATGTTACTGTAATGTAATAAATTATTAAATTGTTAC---------------------------AAAGTGTTGTTTTTGCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108396252 566 - 171882078 ATAAAATCTAAAATGTGAGTTCAACTGAATAAATTTGAATTTCTGTAGG-----AAGAATCAAAATACCTATTTAAAGATTGCAATATATGATAATCATTTTTAAAGTATTTGATTAAACTT--TAGGTTTTCCAGAAATG-AA-AAAAATCAATTCTAAAACCAAAGCTGATTTTTAGAAAATGTGAAAATGTAAATCAG-----CCCTATCCATAATAGAGTTTCTCTAAAACTTTATGTT----AGTCATTTT-TAA-----ATAACTATTCAAAAATGTAACTGCTATCTTAATGTTTTGAAATAAGTTAAAACATTTT-AAATATGAATACTATAGTTTAAAAAAAAGAAA-CTAGGGGAAGGAAAAGTAGAGaaagaaacgccaattccagtccaaagctttatttgccaagttttcttagaatgacttttaccaatttatgaattcttataaacattgaatatat-atggaaatactgaATCATATAATGGAAATATTGAATTTGCCTAAAGTGGCATTGTTGACTGCTGC---AATGTTACTGTAATGTAATAAATTATTAAATTGTTGC---------------------------AAAGTGTTGTTTTTGCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1         6706 567 -   2311642 ATAAAATCTAAAATGTGAGTTCAACTGAATAAATTTGAATTTCTGTAGG-----AAGAATCAAGATACCTATTTAAAGATTGCAATATATGATAATCATTTTTAAAGTATTTGATTAAACTT--TAGGTTTTCCAGAAATG-AA-AAAAATCAATTCTAAAACCAAAGCTGATTTTTAGAAAATGTGAAAATGTAAATCAG-----CCCTATCCATAATAGAGTTTCTCTAAAACTTTATGTG----AGTCATTTT-TAA-----ATAACTATTCAAAAATGTAACTGCTATCTTAATGTTTTGAAATAAGTTAAAACATTTT-AAATATGAATACTATAGTTTAAAAAAAAGAAACCTAGGGGAAGGAAAAGTAGAGaaagaaacgccaattccagtccaaagctttatttgccaagttttcttagaatgacttttaccaatttatgaattcttataaacattgaatatat-atggaaatactgaATCATATAATGGAAATATTGAATTTGCCTAAAGTGGCATTGTTGACTGCTGC---GATGTTACTGTAATGTAATAAATTATTAAATTGTTGC---------------------------AAAGTGTTGTTTTTGCCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         4904 564 -   1987038 --AAAATCTAAAATGTGAGTTCAACTGAATAAATTTGAATTTCTGTAGG-----AAGAATCAAAATACCTATTTAAAGATTGCAATATATGATAATCATTTTTAAAGTATTTAATTAAACTT--TAGGTTTTCCAGAAATG-AA-AAAAATCAATTCTAAAACCAAAGCTGAGTTTTATAAAACATGAAAATGTAAATCAG-----CCCTATCCATAATAGAGTTTCTCTAAAACTTTATGTT----AGTCATTTT-AAA-----ATAACTATTCAAAAATGTAACTGCTATCTTAATGTTTTGAAATAAGTTAAAACATTTT-AAATATGAATACTATAGTTTAAAAAAAAGAAA-CTAGGGGAAAGAAAAGTAGAGaaagaaatgccaattccagtccaaagctttatttgccaagttttcttagaatgacttttaccaatttatgaattcttataaacatagaatatat-atggaaatactgaATCATATAATGGAAATATTGAATTTGCCTAAAGTGGCATTGTTGACTGCTGC---GATGTTACTGTAATGTAATAAATTATTAAATTGTTGC---------------------------AAAGTGTTGTTTTTGCCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21085097 566 -  24206276 ATAAAATCTAAAATGTGAGTTCAACTGAATAAATTTGAATTTCTGTAGG-----AAGAATCAAAATACCTATTTAAAGATTGTAATATATGATAATCATTTTTAAAGTATTTGATTAAACTT--TAGGTTTTCCAGAAATG-AA-AAAAATCAATTCTAAAACCAAAGCTGATTTTTAGAAAATGTGAAAATGTAAATCAG-----CCCTATCCATAATAGAGTTTCTCTAAAACTTGATGTT----AGTCATTTT-TAA-----ATAACTATTCAAAAATGTAACTGCTATCTTAATGTTTTGAAATAAGTTAAAACATTTT-AAATATGAATACTATAGTTTAAAAAAAAGAAA-CTAGGGGAAGGAAAAGTAGAGAAAGAAATGCCAATTCCAGTCCAAAGCTTTATTTGCCAAGTTTTCTTAGAATGACTTTTACCAATTTATGAATTCTTATAAACATAGAATATAT-ATAGAAATACTGAATCATATAATGGAAATATTGAATTTGCCTAAAGTGGCATTGTTGACTGCTGC---GATGTTACTGTAATGTAATAAATTATTAAATTGTTGC---------------------------AAAGTGTTGTTTTTGCCT
i chlSab2.chr29             C 0 I 340
s manLeu1.NW_012106908v1          708 566 -   1397330 ATAAAATCTAAAATGTGAGTTCAACTGAATAAATTTGAATTTCTGTAGG-----AAGAATCAAAATACCTATTTAAAGATTGCAATATATGATAATTATTTTTAAAGTATTTGATTAAACTT--TAGGTTTTCCAGAAATG-AA-AAAAATCAATCCTAAAACCAAAGCTGATTTTTAGAAAATGTGAAAATGTAAATCAG-----CCCTATCCATAATAGAGTTTCTCTAAAACTTTATGTT----AGTCATTTT-AAA-----ATAACTATTCAAAAATGTAACTGCTATCTTAATGTTTTGAAATAAGTTAAAACATTTT-AAATATGAATACTATAGTTTAAAAAAAAGAAA-CTAGGGGAAGGAAAAGTAGAGaaagaaatgccaattccagtccaaagctttatttgccaagttttcttagaatgacttttaccaatttatgaattcttataaacatagaatatat-atggaaatactgaATCATATAATGGAAATATTGAATTTGCCTAAAGTGGCATTGTTGACTGCTGC---GATGTTACTGTAATGTAATAAATTATTAAATTGTTGC---------------------------AAAGTGTTGTTTTTGCCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        24259 593 -   1784207 ATAAAATTTAAAATGTGAGTTCAACTGAATAAATTTGAATTTCTGTAGG-----AAGAATCAAAATACCTATTTAAAGATTGCAATATATGATAATCATTTTTAAAGTATTTGATTAAACTTGAGAGGTTTTCCAGAAATG-AA-AAAAATCAATTCTAAAACCAAAGCTGATTTTTAGAAAATGTGAAAATGTAAATCAG-----CCCTATCCATAAT--AGTTTCTCTAAAACTTTATGTT----AGTCATTTT-AAA-----ATAACTATTCAAAAATGTAACTACTATCTTAATGTTTTGAAATAAGTTAAAACATTTT-AAATATGAATACTGTAGTTTAAAAGAAAGAAA-CTAGGGGAAGGAAAAGTAGAGaaagaaatgccaattccagtccaaagctttatttgccaagttttcttagaatgacttttaccaatttatgaattcttataaacatagactatat-atggaaatactgaATCATATAATGGAAATACTGAATTTGCCTAAAGTGGCATTGCTGACTGCTGT---GATGTTACTGTAATGTAATAAACTATTAAATTGTTGCAAATTAATAATTTGCAACAGTTTTGTGAAAATGTTGTTTTTGCCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114306762 553 - 132174527 -AGAATTTTAAAATGTGTGTTCAACTGACCAAATTTGAATTTCTGTAGG-----AAGAATCAAAATACCTGTTTAAAGATTGCAATATATGATAATCATTTTTAAAGGATTTTATTAAACCTGATAGGTTTTCCAGAAATG-AATAAAACTCAGTTCTAAAAACAACGCTGATTTTTAGAAAATTTGAAAATGTAAATCAGTCCTATCCTATCCACAATATAGTTTCTCTAAAACTTTATCTTAAAGAGttatttt-aaa-----ataactatttaaaaa-ataaCTGCTCTCTTAATGTTTTGAAATTACTTAAAACATTTAAAAATATGAATATTGCAGTTTAGAAGAAA-----TAGGGGGAAGGAAAAGT----GAAGAAATGCCAATTCCAGTCCAAAGCTTTATTTGCCAAGTTTTCTAAGAATGACTTTTACCACTGTATGAACTCCTGTGAACA--GAATGTAAGATGGAAATCCTGAGCCT------------------TTTGTCTAAAGCGGCAATACTGACTGCTGCTGTGATGCTCCTGTGATGTAATAAATTATTCAGTTGCTGC---------------------------AAAGTGCTGTTTCTGCCT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1012859 556 +   1024465 -AGAATTTTCAAATGTGGGTTCAACTGAATGAATTTCAATTCCTGTAGG-----AAGAATTAAAATACCTATTTAAAGATTGCAATATATGATAATCATTTTTAAAGGATTTCATTAAAACTGATAGATTTTCCAGAAATG-AATAAAAATCAGTTCTGAAACCAAAGCTGATTTTAAGAAAATTTGAAAATGTAAATCAGTCCTATCCTATCCATAATATAGCTTCTCCAAAACTTTATCTT-AAGAGTCATTTTCAAG-----ATAACTATTAAAACATGTAACTGCTATCTTAATGTTTTGAAATTACCT-AAACATTTTAAAATATGAATGTCATAGTTTAAAAGAAA-----CCAGGGGAAGGAAAAGTAGAGaaagaaatgccaattccagtccaaagctttagttgccaagtttcctaagaatgacttttaccaatgtatgaactcttgggaaca--gaacgtaagatggaaatcctgagcc-------------------tttgtctaaagcggcattactgactgctgctgtgatGCTCCTGTAATGTAATAAATTATTGAATTGCTGC---------------------------AAAGTGCTGTGTTTGCCT
i cebCap1.NW_016107979v1    I 1151 C 0
e dasNov3.JH564958             183289   0 +    584178 C
e canFam3.chr9               55250958  16 +  61074082 I
e otoGar3.GL873533             432204  86 -  31380117 I
e saiBol1.JH378108           50457440   1 +  54856640 I

a score=1805004.000000
s hg38.chr15_KI270850v1_alt    318738 284 +    430880 TAAAATTTCGTGTGTCTTGAAAACTACAGTATTAAATAC-TATAGC--ATGCAAATAATGGGCATGCTTGGCATGAGATAATCTGTTTTTATTGTTACAAAATTGTAA-----CTATGTAAGTGTGTTTATTAAAAGAA--CAAAC--------------------AA----------------AGTTATGGGATGAAAGAGTTACGGGATAAAAAATGTGGAAAAG-TGTGTC-AA--------------AAAAAGTAG-AAAAAA-TTGTATGAAAAGTTA-TTTAAAAAGTTATGGAAAAGAAGTTATGGGATT---AAAAAAAGTCAC-GGGATATAAATAAAAATAAA
s panTro5.chr15              63472074 284 +  83230942 TAAAATTTCATATGTCTTGAGAACTACAGTATTAAATAC-TATAGC--ATGCAAATAATGGGCACGCTTGGCATGAGATAATCTGTTTTTATTGTTACAAAATTGTAA-----CTATGTAAGTGTGTTTATTAAAAGAA--CAAAC--------------------AA----------------AGTTATGGGATGAAAGAGTTACGGGATAAAAAATGTGGAAAAG-TGTGTC-AA--------------AAAAAGTAG-AAAAAA-TTGTATGAAAAGTTA-TTTAAAAAGTTATGGAAAAGAAGTTATGGGATT---AAAAAAAGTCAC-GGGATATAAATAAAAATAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80429246 284 +  99763055 TAAAATTTCATATGTCTTGAGAACTACAGTATTAAATAC-TATAGC--ATGCAAATAATGGGCACGCTTGGCATGAGATAATCTGTTTTTATTGTTACAAAATTGTAA-----CTATGTAAGTGTGTTTATTAAAAGAA--CAAAC--------------------AA----------------AGTTATGGGATGAAAGAGTTACGGGATAGAAAATGTGGAAAAG-TGTGTC-AA--------------AAAAAGTCG-AAAAAA-TTGTATGAAAAGTTA-CTTAAAAAGTTATGGAAAAGAAGTTATGGGATT---AAAAAAAGTCAC-GGGATATAAATAAAAATAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        29433 280 -   1709092 TAAAATTTCGTGTGTCTTGAAAACTATAGTATTAAATAC-TATAGC--ATACAAATAATGGGCACGCTTGGCATGAGATCATCTGTTTTTATTGTTACAAAATTGTAA-----C--TGTAAGCGTGTTTATTAAAAGAA--CAAAC--------------------AA----------------AGTTATGGGATGAAAGAGTTATGGGATAAAAAATGTGG-AAAG-TGTGTC-AA--------------AAAAAGTAG-AAGAAA-TTGTATGAAAAGTTA-TTTAAAAAGTTATGGAAAAGAAGTTATGGGATT----AAAAAAGTCAC-AGGATATAAATAAAAATAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17180527 281 - 121039945 TAAAATTTTGTGTGTCTTGAAAACTATAGTATTAAATAC-TATAGC--GTGCAAACAATGGGCATGCTTGGCATGAGATAATCTGTTTTTATTTTTACAAAATTGTAA-----CTATATAAGTGTGTTTATTAAAAG------AAC--------------------AA----------------AGTTATGGGATGAAAGAGTTATGGGATAAAAAATGTGGAAAAG-TGTGTC-AA--------------AAAAAGTAG-AAAAAA---GTATGAAAAGTTA-TTTAAAAAGTTATGAAAAAGAAGTTATGGGATTAAAAAAAAAAGCCAC-GGGATATAAATAAAAATAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60869798 288 + 169600520 TAAAATTGTGTGTGTCTTGAAAACTGTAGTATTAAATAC-TATAGC--GTGCAAATACTGGGCACGCTTGGCATGAGATAATCTGTTTTTATTTTTACAAAATTATAA-----CTATGTAAGTGTGTTTATTAAAAGAA--AAAAC------------------TAAA----------------AGTTATGGGATGAAAGAGTTATGGGGCAAAAC--GTGGAAAAG-TGTGTC-AA--------------AAAAAGTAG-AAAAAAGTTTTATGAAAAGTTATTTTAAAAAGTTATGAAAAAGAAGTTATGGTATT-AAAAAAAAAGTCAC-AGGATATAAATAAAAATAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108396818 291 - 171882078 TAAAATTGTGTGTGTCTTGAAAACTATAGTATTAAATAC-TATAGC--GTGCAAATACTGGGCACGCTTGGCATGAGATAATCTGTTTTTATTTTTACAAAATTATAA-----CTATGTAAGTGTGTTTATTAAAAGAA--CAAAC------------------TAAA----------------AGTTATGGGATGAAAGAGTTATGGGGCAAAACATGTGGAAAAG-TGTGTC-AA--------------AAAAAGTAGAAAAAAAGTTTTATGAAAAGTTATTTTAAAAAGTTATGAAAAAGAAGTTATGGTATT-AAAAAAAAAGTCAC-AGGATATAAATAAAAATAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1         7273 290 -   2311642 TAAAATTGTGTGTGTCTTGAAAACTATAGTATTAAATAC-TATAGC--GTGCAAATACTGGGCACGCTTGGCATGAGATAATCTGTTTTTATTTTTACAAAATTATAA-----CTATGTAAGTGTGTTTATTAAAAGAA--CAAAC------------------TAAA----------------AGTTATGGGATGAAAGAGTTATGGGGCAAAACATGTGGAAAAG-TGTGTC-AA--------------AAAAAGTAG-AAAAAAGTTTTATGAAAAGTTATTTTAAAAAGTTATGAAAAAGAAGTTATGGTATT-AAAAAAAAAGTCAC-AGGATATAAATAAAAATAAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         5468 304 -   1987038 TAAAATGGTGTGTGTCTTGAAAACTATAGTATTAAATAC-TATAGA--GTGCAAATACTGGGCACGCTTGGCATGAGATAATCTGTTTTTATTTTTACAAAATTGTAA-----CTATGTAAGTGTGTTTATTAAAAGAA--CAAAC------------------TAAAAGTTATGGGATGAAAGAGTTATGGGATGAAAGAGTTATGGGGCAAAACATGTGGAAAAG-TGTGCC--A--------------AAAAAGTAG-AAAAAAGTTTTATGAAAAGTTATTTTAAAAAGTTATGAAAAAGAAGTTATGGTATT--AAAAAAAAGTCAC-AGGATATAAATAAAAATAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21086003 304 -  24206276 taaaatTATGTGTGTCTTGAAAACTATAGTATTAAATAC-TATAGC--GTGCAAATACTGGGCACGCTTGGCATGAGATAATCTGTTTTTATTTTTACAAAATTGTAA-----CTATGTAAGTGTGTTTATTAAAAGAA--CAAAC------------------TAAAAGTTATGGGATGAAAGAGTTATGGGATGAAAGAGTTATGGGGCAAAAC--GTGGAAAAG-TGTGTC--A--------------AAAAAGTAG-AAAAAAGTTTTATGAAAAGTTATTTTTAAAAGTTATGAAAAAGAAGTTATGGTATTAAAAAAAAAAGTCAC-AGGATATAAATAAAAATAAA
i chlSab2.chr29             I 340 C 0
s manLeu1.NW_012106908v1         1274 288 -   1397330 TAAAATTGTGTGTGTCTTGAAAACTATAGTATTAAATAC-TATAGA--GTGCAAATACTGGGCACGCTTGGCATGAGATAATCTGTTTTTATTTTTACAAAATTGTAA-----CTAT----GTGTGTTTATTAAAAGAA--CAAAC------------------TAAA----------------AGTTATGGGATGAAAGAATTATGGGGCAAAACATGTGGAAAAG-TGTGTCAAA--------------AAAAAGTAG-AAAAAAGTTTTATGAAAAGTTATTTTAAAAAGTTATGAAAAAGAAGTTATGGTATTAAAAAAAAAAGTCAC-AGGATATAAATAAAAATAAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        24852 291 -   1784207 TAAAATTGTGTGTGTCTTGAAAACTATAGTATTAAATAC-TATAGC--ATGCAAATACTGGGCATGCTTGGCATGAGATAATCTCTTTTTATTTTTATAAAATTGTAA-----CTATGTAAGTGTGTTTATTAAAAGAA--CAAAC------------------TAAA----------------AGTTATGGGATGAAAGAGTTATGGGATAAAACATGTGGAAAAG-TGTGTC-AA--------------AAAAAGAAG-AAAAAAGTTTTATGAAAAGTTATTTTAAAAAGTTATGAAAAAGAAGTTATGGTATTAAAAAAAAAAGTCAC-AGGATATAAATAAAAATAAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114307315 324 - 132174527 TAAAATTTTGTGCATCTTGACAGCTGTAGTATTAAAGGTATTGAGA--CTGCAAACACTGGGCACACTTGGCATGAGATAATCTGTTTTTATTTTTACAAAATTGTAATATAACTATGCAAGTGTGTTTATTAAAAGAACACAAACTAATAAAATTTATGGGATTAAA----------------AGTTATGGGATAAAAAAGTCATCGGATAAAAAA--TGGAAAAGTTGTGGC-AAAAAGCATTGTGGATAAAAAGTAG-AAAAA--TTTTATGAAAAGTTA----TAAATGTTATGAAAAGGAAATTATGAGATTTTCTTTTTAAGTCAT-GGGATAGAAATAAAAATAAA
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1013415 312 +   1024465 TAAAATTTTGTGTGTCTTGACAAAAATAGTATTAAAGGTATCCAGACTCTGCAAATGCTGGGCACACTTGGCATGAGATAATGTGTTTTTATTTTTATGAAATGGTAATATAGCTATGCAAGTGTGTTCATTAAAAGAACGCAAACTAA---------------TAAA----------------AGTTATGGGATAAAAAAGTTATGGGATAAAAAATGTGGAAAAGTTGTGGC-AAAAAACGTTGTTGATAAAAAGTAG-AAAAA--TTTTATGAAAAG-TA----TAAAATTTATGGAAAGGAAGTTATGAGATTTT-TAAAAAAATCATAGGGATAAATATAAAAATAAA
i cebCap1.NW_016107979v1    C 0 C 0
e dasNov3.JH564958             183289   0 +    584178 C
e canFam3.chr9               55250958  16 +  61074082 I
e otoGar3.GL873533             432204  86 -  31380117 I
e saiBol1.JH378108           50457440   1 +  54856640 I

a score=164552.000000
s hg38.chr15_KI270850v1_alt    319022 23 +    430880 TAAAAGCAGGCCCCTTCCA-GCAT
s panTro5.chr15              63472358 23 +  83230942 TAAAAGCAGGCCCCTTCCA-GCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80429530 23 +  99763055 TAAAAGCAGGCCCCTTCCA-GCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        29713 23 -   1709092 TAAAAGCAGGCCCCTTTCA-GCAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17180808 23 - 121039945 TAAAAGCAGGCCCCTGTCA-GCAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60870086 23 + 169600520 TAAAAGCAGGCCACTGTCA-GCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108397109 23 - 171882078 TAAAAGCAGGCCCCTGTCA-GCAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1         7563 23 -   2311642 TAAAAGCAGGCCCCTGTCA-GCAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         5772 23 -   1987038 TAAAAGCAGGCCCCTGTCA-GCAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21086307 23 -  24206276 TAAAAGCAGGCCCCTGTCA-GCAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         1562 23 -   1397330 TAAAAGCAGGCCCCTGTCA-GCAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        25143 23 -   1784207 TAAAAGCAGGCCCCTGTCA-GCAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114307639 22 - 132174527 TAACAGCAGGCTTCTGTCA-GCA-
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1013727 22 +   1024465 TAAAAGCATGCCCCTGTCA-GCA-
i cebCap1.NW_016107979v1    C 0 C 0
s dasNov3.JH564958             183289 23 +    584178 TAAAAGCCTGATGCTGGCAGGCA-
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9               55250958 16 +  61074082 I
e otoGar3.GL873533             432204 86 -  31380117 I
e saiBol1.JH378108           50457440  1 +  54856640 I

a score=878684.000000
s hg38.chr15_KI270850v1_alt    319045  95 +    430880 AAGCCTGGAGAAGTGGG-TCTGGACTCTCCGCCCCCACCATGTCCCTACCACC--------CCTTCCCAGTCA-----GCCCTTTACCATTAGGGTAG-----CAAGACCCCTG
s panTro5.chr15              63472381  95 +  83230942 AAGCCTGGAGAAGTGGG-TCTGGACTCTCCGCCCCCACCATGTCCCTACCACC--------CCTTCCCAGTCA-----CCTCTTTACCATTAGGGTAG-----CAAGACCCCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80429553  95 +  99763055 AAGCCTGGAGAAGTGGG-TCTGGACTCTCCGCCCCCACCATGTCCCTACCACC--------CCTTCCCAGTCA-----CCTCTTTACCATTAGGGTAG-----CAAGACCCCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        29736  99 -   1709092 AAGCCTGGAGAAG-GGG-TCTGGAGTCTCCGCCCCCACCATGTCCCTACCACC--------CCTTCCCAGTCA-----CCTCTTTACCATTAGGGTAGCAAGACAAGACCCCTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17180831 105 - 121039945 AAGCCTGGAGAAGTGGG-TCTGGATTCTCCGCCCCCACCATGTCCCTACAACC--------CCTTCCCAGTCACCATTCCCCTTTACCATTAGGGTAGCAAGACAAGACCCCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60870109 100 + 169600520 AAGCCTGGAGAAGTGGG-TCTGGAGTCTTCACCCCCACCATGTCCCTGCCACC--------CCTTCCCAGTCA-----CCCGTTTACCACTAGGGTAGCAAGACAAGACCCCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108397132 100 - 171882078 AAGCCTGGAGAAGTGGG-TCTGGAGTCTTCACCCCCACCATGTCCCTGCCACC--------CCTTCCCAGTCA-----CCCGTTTACCACTAGGGTAGCAAGACAAGACCCCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1         7586 100 -   2311642 AAGCCTGGAGAAGTGGG-TCTGGAGTCTTCACCCCCACCATGTCCCTGCCACC--------CCTTCCCAGTCA-----CCCGTTTACCACTAGGGTAGCAAGACAAGACCCCTG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         5795  98 -   1987038 AAGCCTGGAGAAGTGGG-TCTGGAGTCTTCACCCCCACCATGTCCCTGCCACC--------CCTTCCCAGTCA-----CCCGTTTACCACTAGGGTAGCAAGACAAGACCC--G
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21086330 100 -  24206276 AAGCCTGGAGAAGTGGG-TCTAGAGTCTTCACCCCCACCATGTCCCTGCCACC--------CCTTCCCAGTTA-----CCCGTTTACCACTAGGGTAGCAAGACAAGACCCCTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         1585 100 -   1397330 AAGCCTGGAGAAGTGGG-TCTGGAGTCTTCACCCCCACCATGTCCCTGCCACC--------CCTTCCCAGTCA-----CCCGTTTACCACTAGGGTAGCAAGACAAGACCCCTG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        25166 100 -   1784207 AAGCCTGGAGAAGTGGG-TCTGGAGTCTTCACCCCCACCATGTCCCTGCCACC--------CCTTCCCAGTCA-----CCCATTTACCACTAGGGTAGCAAGACAAGACCCCTG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114307661  97 - 132174527 AGGCCTGGAGAAGGGGGAACTGGAGTCTCTACCCCCACCATGT----GCCACC--------CCATCCCAGTCA-----CCCCTCTATTGTTAAGGCAGCAAGACAAGACCCCTG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1013749 100 +   1024465 AGGCCTGGAGAAGGGGG-GCTGGAGTCTCCGCCCCCACCATGTCCCCCCCACC--------CCTTCCCAGTCA-----CCCCTTTATTATTAGGGAAGCAAGACAAGAGCCCTG
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             432290  87 -  31380117 AGGTGTGGAGAAGTGGC-GCTG---------CCCCTACGCCATCTCTGCCAC------------TCCCAGTCA-----CCCCTTTCTCCATAGATTAGCAAGATAAGACCCCTG
i otoGar3.GL873533          I 86 C 0
s canFam3.chr9               55250974 108 +  61074082 AAACCTGGAGAAGTGGG-GCCGGGGGCTCTGCTCCCACCCTGTCCCTGCCACCCTATCATTCCTTCCCAGTTA-----CCCTTTTATCCCTAAACTAGCAAGATAAGACCCCTG
i canFam3.chr9              I 16 C 0
s dasNov3.JH564958             183312  97 +    584178 AAGCCCAGAGACACGGG-ACCGGGGGCTCTGCCCCCACTTCTTCCTCTC--CT--------CCTTCCCTGCCA-----CCC-TTTATCCCTAGAATAGCAACATGGGGCCCCTG
i dasNov3.JH564958          C 0 I 1800
e saiBol1.JH378108           50457440   1 +  54856640 I

a score=410555.000000
s hg38.chr15_KI270850v1_alt    319140 48 +    430880 -------------------TCTAAT-GGGGGGAG----A----------CAGACCCTTTGCCACCTTGACCAGGGCTGAGTC
s panTro5.chr15              63472476 48 +  83230942 -------------------TCTAAT-GGGGGGAG----A----------CAGACCCTTTGCCACCTTGACCAGGGCTGAGTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80429648 48 +  99763055 -------------------TCTAAT-GGGGGGAG----A----------CAGACCCTTTGCCACCTTGACCAGGGCTGAGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        29835 48 -   1709092 -------------------TCTAAT-GGGGGGAG----A----------CAGACCCTTTGCCACCTTGACCAGGGCTAAGTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17180936 49 - 121039945 -------------------TCTAATGGGGGGGAG----A----------CAGACCCTTTGCCACGTTGACCAGGGCTGAGTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60870209 48 + 169600520 -------------------TCTAAT-GGGGGGAG----A----------CAGACTTTTTGCCACCTTGACCACGGCTGAGTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108397232 48 - 171882078 -------------------TCTAAT-GGGGGGAG----A----------CAGACTTTTTGCCACCTTGACCACGGCTGAGTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1         7686 48 -   2311642 -------------------TCTAAT-GGGGGGAG----A----------CAGACTTTTTGCCACCTTGACCACGGCTGAGTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         5893 48 -   1987038 -------------------TCTAAT-GGGGGGAG----A----------CAGACTTTTTGCCACCTTGACCACGGCTGAGTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21086430 48 -  24206276 -------------------TCTAAT-GGGGGGAG----A----------CAGACTTTTTGCCACCTTGACCACGGCTGAGTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         1685 48 -   1397330 -------------------TCTAAT-GGGGGGAG----A----------CAGACTTTTTGCCACCTTGACCACGGCTGAGTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        25266 43 -   1784207 -------------------TCTAAT-GGGGGGAG----A----------CAGACTTTTTGCCACCTTGACCATG-----GTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114307758 47 - 132174527 -------------------TCTAAT-GGGGAAAG----A----------CAGACCTTTT-CCAGCTTGACCAGGGCTGAGTC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1013849 52 +   1024465 -------------------TCTAAT-GGGGGGAGACCAA----------CAGACCCTTTGCCACCTTGACCAGGGCTGAGTC
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             432377 58 -  31380117 -------------------TTTGAT-GTGGGAAG----ATAAGCCAATGCAGACCTTTTGCCATCTAGACCAGGACTAAATC
i otoGar3.GL873533          C 0 I 3691
s canFam3.chr9               55251082 77 +  61074082 AGAGGGGTGTGAAAAGCCTCCTAAT-TGGGGGAG----ACAAATAGGTGCAGACCTCTTGCCACCTTGGCAAGGGCTGTGTC
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958             183409 1800 +    584178 I
e saiBol1.JH378108           50457440  1 +  54856640 I

a score=239681.000000
s hg38.chr15_KI270850v1_alt    319188 33 +    430880 CTTAAATTTCTGGACGATGATGCTTGTTATTTA----------
s panTro5.chr15              63472524 33 +  83230942 CTTAAATTTCTGGACGATGATGCTTGTTATTTA----------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80429696 33 +  99763055 CTTAAATTTCTGGACGATGATGCTTGTTATTTA----------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        29883 33 -   1709092 CTTAAATTTCTGGATGTTGATGCTTGCTATTTA----------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17180985 33 - 121039945 CTTAAATTTCTGGACGATGATGCCTATTATTTA----------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60870257 33 + 169600520 CTTGAATTTCTGGACGATGATGCTTGTTATTTA----------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108397280 33 - 171882078 CTTGAATTTCTGGACGATGATGCTTGTTATTTA----------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1         7734 33 -   2311642 CTTGAATTTCTGGATGATGATGCTTGTTATTTA----------
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         5941 33 -   1987038 CTTGAATTTCTGGACGATGATGCTTGTTATTTA----------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21086478 33 -  24206276 CTTGAATTTCTGGACGATGATGCTTGTTATTTA----------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         1733 33 -   1397330 CTTGAATTTCTGGACGATGATGCTTGTTATTTA----------
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        25309 33 -   1784207 CTTGAAGTTCTGGACGATGATGCTTGTTATTTA----------
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114307805 33 - 132174527 CTTAAATCTCTGGATGATGATGGTTGTTATTTA----------
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1013901 33 +   1024465 CTTAAATCTCTGGGTGATGATGGTTGTTATTTA----------
i cebCap1.NW_016107979v1    C 0 C 0
s canFam3.chr9               55251159 34 +  61074082 TTTA----TCTGGAC-----TACTCATCGTTCCAGAAAAACAA
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958             183409 1800 +    584178 I
e otoGar3.GL873533             432435 3691 -  31380117 I
e saiBol1.JH378108           50457440  1 +  54856640 I

a score=141367.000000
s hg38.chr15_KI270850v1_alt    319221 15 +    430880 AGAGCCAGAGGCTGG
s panTro5.chr15              63472557 15 +  83230942 AGAGCCAGAGGCTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80429729 15 +  99763055 AGAGCCAGAGGCTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        29916 15 -   1709092 AGAGCCAGAGGCTGG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17181018 15 - 121039945 AGAGCCAGAGGTTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60870290 15 + 169600520 AGAACCAGAGGCTGg
i rheMac8.chr7              C 0 I 311
s macFas5.chr7              108397313 15 - 171882078 AGAACCAGAGGCTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1         7767 15 -   2311642 AGAACCAGAGGCTGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         5974 15 -   1987038 AGAACCAGAGGCTGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21086511 15 -  24206276 AGAACCAGAGGCTGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         1766 15 -   1397330 AGAACCAGAGGCTGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        25342 15 -   1784207 AGAACCAGAGGCTGG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114307838 15 - 132174527 GGAGCCAGAGGCTGC
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1013934 15 +   1024465 AGAGCCAGAGGCTGC
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             436126 15 -  31380117 AAAGCCAGAGGCTTA
i otoGar3.GL873533          I 3691 C 0
s canFam3.chr9               55251193 15 +  61074082 AGAGCCAGAGGCTCA
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958             183409 1800 +    584178 I
e saiBol1.JH378108           50457440  1 +  54856640 I

a score=3155818.000000
s hg38.chr15_KI270850v1_alt    319236 419 +    430880 ---TGGAGTTGGTTTGTTT-------GGAGT-------------------AGG-----CCT-----------GATGGCCTCTCTA-------CTCTTGCCAAAGCAACTTTTCCCTCAGGGGAGCTC--CCATCTTCTTATTCAGAG-------------------------------------------AGGCAGC---------TGAGGCAGGACAG-TGGGGCTAACAGTAGACCAGGCAAGGGCATGGGCT--GCTGGGGTGAC-CCCCCCTTCCCCAG----------TGTATATATTGTATCTGCGTAACATTTTGTATATTCTGGGGAGTGGGGCTGC-CCCTGTATCGTACCTAGTGGAGGTTGGAGCTGGCAT---------------------------------------ATAGGGAGGAGGATCTAATAATTATTTGCATCTG-GGAAACGTATTTATTGCTAGCATAGGACATAGGAAGGAGGCGGGGATGGGGTCGTGGCTCCCTTGGTGA--TGCGACTCCTGTTTATTTTGCTTTTCATTTTGGAATAAATGGATTTAGCCATACT
s panTro5.chr15              63472572 410 +  83230942 ---TGGAGTTGGTTTGTTT-------GGAGT-------------------AGG-----CCT-----------GATGGCCTCTCTA-------CTCTTGCCAAAGCAACTTTTCCCTCAGGGGAGCTC--CCATCTTCTTATTCAGAG-------------------------------------------AGGCAG------------------GACAG-TGGGGCTAACAGTAGACCAGGCAAGGGCATGGGCT--GCTGGGGTGAC-CCCCCCTTCCCCAG----------TGTATATATTGTATCTGCATAACATTTTGTATATTCTGGGGAGTGGGGCTGC-CCCTGTATCGTACCTAGTGGAGGTTGGAGCTGGCAT---------------------------------------ATGGGGAGGAGGATCTAACAATTATTTGCATCTG-GGAAACGTATTTATTGCTAGCATAGGACAGAGGAAGGAGGCGGGGATGGGGTCGTGGCTCCCTTGGTGA--TGCGACTCCTGTTTATTTTGCTTTTCATTTTGGAATAAATGGATTTAGCCATACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80429744 410 +  99763055 ---TGGAGTTGGTTTGTTT-------GGAGG-------------------AGG-----TCT-----------GACGGCCTCCTTA-------CTCTTGCCAAAGCAACTTTTCCCTCAGGGGAGCTC--CCATCTTCTTATTCAGAG-------------------------------------------AGGCAG------------------GACAG-TGGGGCTAACAGTAGACCAGGCAAGGGCATGGGCT--GCTGGGGTGAC-CCCCCCTTCCCCAG----------TGTATATATTGTATCTGCATAACATTTTGTATATTCTGGGGAGTGGGGCTGC-CCCTGTATCGTACCTAGTGGAGGTTGGAGCTGGCAT---------------------------------------ATGGGGAGGAGGATCTAACAATTATTTGCATCTG-GGAAACGTATTTATTGCTAGCATAGGACAGAGGAAGGAGGCGGGGATGGGGTCGTGGCTCCCTTGGTGA--TGCGACTCCTGTTTATTTTGCTTTTCATTTTGGAATAAATGGATTTAGCCATACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        29931 418 -   1709092 ---TGGAGTTGGTTTGTTT-------GGAGT-------------------AGG-----CCT-----------GATGGCCTCTCTA-------CTCTTGCCAAAGCAACTTTTCCCTCAGGGGGGCTC--CCATCTTCTTATTCAGAG-------------------------------------------AGGCAGC---------TGAGGCAGGACAG-TGGGGCTAACAGTAGACCAGGCAAGGGCATGGGCT--GCTGGGGTGAC-CCCCCCTTCCCCAG----------TGTATATATTGTATCTGCGTAACATTTTGTATATTCTGGGGGGTGGGGCTG--CCCTGTATCGTACCTAGTGGAGGTTGGAGCTGGCAT---------------------------------------ATGGGGAGGAGGATCTAATAATTATTTGCATCTG-GGAAACGTATTTATTGCTAGCATAGGACAGAGGAAGGAGGCGGGGATGGGGTCGTGGCTCCCTTGGTGA--TGCGACTCGTGTTTATTTTGCTTTTCATTTTGGAATAAATGGATTTAGCCATACT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17181033 419 - 121039945 ---TGGAGTCAGTTTGTTT-------GGAGG-------------------AGG-----TCT-----------GATGGCCTCCTTA-------CTCTCACCAAAGCAACTTTTCCCTCAGGGAGGTTC--CCATCTTCTTATTCAGAA-------------------------------------------AGGCAGC---------TGAGGTGGGACAG-TGGGGCTAACAGTAGACCAGGTGAGGGCACGGGCT--GCTGGGGTGAC-CCCCGCTTCCCCAG----------TGTATATATTGTATCTGCGTAACATTTTGTATATTCTGGGGGGTGGGGCCAC-CCCTCTATCGTACCTAGTGGAGGTTGGAGCTGGCAT---------------------------------------ATGGGGAAGAGGTTCTAATAATTACTTGCATCTG-GGAAACGTATTTATTGCTAGCATAGGACAGAGGAAGGAGGCGGAGATGGGGTCCTGGCTCCCTTGGTGA--TGCGACTCCTGTTTATTTTGCTTTTGATTTTGGAATAAACGGATTTAGCCATACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60870616 406 + 169600520 ---TGGAGTTGGTTTGTTT-------GGAGG-------------------AGG-----CCT-----------GATGACCTCTCTA-------CTCTCACCAAAGCAACTTTTCCCTG--GGGGGCTC--CCA---TCTTATTCAGAG-------------------------------------------AGGCAGC---------TGAACCAGGACAG-TGGGGCTAACAGTAGACCAAGTGAGGGCATGGGCT--GCTGGGGTGAC-TCCTGCTTCCCCAG----------TATACACATTGAATTTGTGTAAC---------ATTCTGGGGGGTAGGGCCACCCCCTGTATTGTACCTAGTGGAGGTTGGAGCTGGCAT---------------------------------------AAGGAGAGGAGGTTCTAATAATTATTTGCAGCTG-GGAAACTTATTTATTCCTAGCATAGGACAGAGGAAGGAGGCGGGGATGGGGTCGTGGCTCCCTTGGTGA--TGTGACTCCTGTTTATTTCACTTTTCATTGTGGAATAAATGGATTTAGCTATACT
i rheMac8.chr7              I 311 C 0
s macFas5.chr7              108397328 409 - 171882078 ---TGGAGTTGGTTTGTTT-------GGAGG-------------------AGG-----CCT-----------GATGACCTCTCTA-------CTCTCACCAAAGCAACTTTTCCCTG--GGGGGCTC--CCATCTTCTTATTCAGAG-------------------------------------------AGGCAGC---------TGAACCAGGACAG-TGGGGCTAACAGTAGACCAAGTGAGGGCATGGGCT--GCTGGGGTGAC-TCCCGCTTCCCCAG----------TATACACATTGAATTTGTGTAAC---------ATTCTGGGGGGTAGGGCCACCCCCTGTATTGTACCTAGTGGAGGTTGGAGCTGGCAT---------------------------------------AAGGAGAGGAGGTTCTAATAATTATTTGCAGCTG-GGAAACTTATTTATTCCTAGCATAGGACAGAGGAAGGAGGCGGGGATGGGGTCGTGGCTCCCTTGGTGA--TGTGACTCCTGTTTATTTCACTTTTCATTGTGGAATAAATGGATTTAGCTATACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1         7782 409 -   2311642 ---TGGAGTTGGTTTGTTT-------GGAGG-------------------AGG-----CCT-----------GATGACCTCTCTA-------CTCTCACCAAAGCAACTTTTCCCTG--GGGGGCTC--CCATCTTCTTATTCAGAG-------------------------------------------AGGCAGC---------TGAACCAGGACAG-TGGGGCTAACAGTAGACCAAGTGAGGGCATGGGCT--GCTGGGGTGAC-TCCCGCTTCCCCAG----------TATACACATTGAATTTGTGTAAC---------ATTCTGGGGGGTAGGGCCACCCCCTGTATTGTACCTAGTGGAGGTTGGAGCTGGCAT---------------------------------------AAGGAGAGGAGGTTCTAATAATTATTTGCAGCTG-GGGAACTTATTTATTCCTAGCATAGGACAGAGGAAGGAGGCAGGGATGGGGTCATGGCTCCCTTGGTGA--TGTGACTCCTGTTTATTTCACTTTTCATTGTGGAATAAATGGATTTAGCTATACT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         5989 409 -   1987038 ---TGGAGTTGGTTTGTTT-------GGAGG-------------------AGG-----CCT-----------GATGACCTCTCTA-------CTCTCAGCAAAGCAACTTTTCCCTC--GGGGGCTC--CCATCTTCTTATTCAGAG-------------------------------------------AGGCAGC---------TGAACCAGGACAG-TGGGGCTAACAGTAGACCAAGTGAGGGCATGGGCT--GCTGGGGTGAC-TCCCGCTTCCCCAG----------TATACACATTGAATTTGTGTAAC---------ATTCTGGGGGGTAGGGCCACCCCCTGTATTGTACCTAGTGGAGGTTGGAGCTGGCAT---------------------------------------AAGGAGAGGAGGTTCTAATAATTATTTGCAGCTG-GGAAACTTATTTATTCCTAGCATAGGACAGAGGAAGGAGGCGGGGATGGGGTCGTGGCTCCCTTGGTGA--TGTGACTCCTGTTTATTTCACTTTTCATTGTGGAATAAATGGATTTGGCCATACA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21086526 409 -  24206276 ---TGGAGTTGGTTTGTTT-------GGAGG-------------------AGG-----CCT-----------GATGACCTCTCTA-------CTCTCACCAAAGCAACTTTTCCCTC--GGGGGCTC--CCATCTTCTTATTCAGAG-------------------------------------------AGGCAAC---------TGAACCAGGACAG-TGGGGCTAACAGTAGACCAAGTGAGGGCATGGGCT--GCTGGGATGAC-TCCCGCTTCCCCAG----------TATACACATTGAATTTGTGTAAC---------ATTCTGGGGGGTAGGGCCACCCCCTGTATTGTACCTAGTGGAGGTTGGAGCTGGCAT---------------------------------------AAGGAGAGGAGGTTCTAATAATTATTTGCAGCTG-GGAAACTTATTTATTCCTAGCATAGGACAGAGGAAGGAGGCGGGGATGGGGTCGTGGCTCCCTTGGTGA--TGTGACTCCTGTTTATTTCGCTTTTCATTGTGGAATAAATGGATTTAGCCATACA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         1781 409 -   1397330 ---TGGAGTTGGTTTGTTT-------GGAGG-------------------AGG-----CCT-----------GATGACCTCTCTA-------CTCTCACCAAAGCAACTTTTCCCTC--GGGGGCTC--CCATCTTCTTATTCAGAG-------------------------------------------AGGCAGC---------TGAACCAGGACAG-TGGGGCTAACAGTAGACCAAGTGAGGGCATGGGCT--GCTGGGGTGAC-TCCCGCTTCCCCAG----------TATACACACTGAATTTGTGTAAC---------ATTCTGGGGGGCAGGGCCACCCCCTGTATTGTACCTAGTGGAGGTTGGAGCTGGCAT---------------------------------------AAGGAGAGGAGGTTCTAATAATTATTTGCAGCTG-GGAAACTTATTTATTCCTAGCATAGGACAGAGGAAGGAGGCGGGGATGGGGTCGTGGCTCCCTTGGTGA--TGTGACTCCTGTTTATTTCACTTTTCATTGTGGAATAAATGGATTTAGCCATACA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        25357 410 -   1784207 ---CGGAGTTGGTTTGTTT-------TGAGA-------------------AGG-----CCT-----------GATAACCTCTCTA-------CTCTCACCAAAGCAACTTTTCCCTCA-GGGGGCTC--CCATCTTCTTATTCAGAG-------------------------------------------AGGCAGC---------TAAACCAGGACAG-TGGGGCTAACAGTAGACCAGGTGAGGGCATGGGCT--GCTGGGGTGAC-TCCCGCTTCCCCAG----------CGTACATATTGAATTTGTGTAAC---------ATTCTGGGGGGTAGGGCCACTCCCTGTATTGTACCTAGTGGAGGTTGGAGCTGGTAT---------------------------------------AAGGAGAGGAGGTTCTAATAATTATTTGCGGCTG-GGAAACTTATTTATTGCTAGCATAGGACAGAGGAAGGAGGCGGGGATGGGGTCGTGGCTCCCTTGGTGA--TGTGACTCCTGTTTATTTCACTTTTCATTTTGGAATAAATGGATTTAGCCATACT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114307853 361 - 132174527 ---TGGAGTTGGTTGGTTT-------GGAGG-------------------AAG-----CCT-----------GATGGCCTCCTTC-------CTCTCACCAAAGCAACTTTTCCCTCA-GGGGGCTC--CCA---TCTTATTCAGAG-------------------------------------------AGGCAGC---------TGAGGCAGGACAG-TGGTGCTAACTGTGGA-CAGGTGAGGGCATGGGCT--GCTGGGGTGA---CCCCCTTCCCCAG----------TGTATGTATTATATCTGTGTAACATTTTGTATATTTTAGGGGTTTGGGGTGCCCCTTGTATCATACCTGGCAGAGGTTGGAGCTGGCAC---------------------------------------ATGGGGAGGAGGTTCAAATAATTATTTGCAGTTG-GGAAACTTGTTTATTGATAGCAGAGGACAG------------------------------------------------------TCTTTTGCTTTTTATTTTGGAACAAATGGATTTAGTCACACT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1013949 412 +   1024465 ---TAGAGTTGGTTGGTTT-------GGAGG--------------------AG-----CCT-----------GATGGCCTCCTTC-------CCCTCACGAAAGCAACTTTTCCCTCA-GGGGGCTC--CCATCTTCTTATTCAGAG-------------------------------------------TGGCAGC---------TGAGGCAGGACAG-TGGCGCTAACTGTGGACCAGGCGAGGACACGGGCT--GCTGGGCTGGC--CCCCCTTCCCCAG----------TGTACATATTGTATCTGTGTAACATGTTGTATATTCCGGGGGGTAGGGGCGCCCCCTGTTTTGTACCTAGCAGAGGTTGGAACTGGCAC---------------------------------------ATGGGGAGGAGGTTTTAATAATTATTTGTTGCTG-GGAAA----TTTATTGATAGCAGAGGACAGAGGAAGGAGGCGGGGTTGGGGTCGTGGCTCCC-TGGTGA--TGCAACTCCTGTTTATTTTGCTTTTTATTTTGGAATAAATGGATTTAGTCACACT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             436141 467 -  31380117 ---TAAATTTATTTTCTTTTTTTTAAGGAAG-------------------CTG-----CCTCTGGGAACAAGAAAGGGCTCCTTAGTGCCCCCTTACCCCAAAGCAGTCCTTCCCTC--AGG-------CCATCTATCCTCTCTAAG-------------------------------------------AGGGATT---------TGGGGCAGGACAG-TGGGGCAGCGCCTTGTCCAGCTTTG---CTGGGCTGGGCCGGGCCTAA-CTCAACCTGGCCAGGACATAGGCCTGTATATATTGTATCTGTGTAGTATTTTGTATA-TCTGGGGGCCG--------CTCCATGTTATACC----GGAGGTTGGAGCTGGCAGATGGGGAAGGGGTCTGGAACTATGATGACCTTTAAAAAAATGGGGAGGAGTTTCTAATAATTATTTGGGGCTG-GGAAACTTATTTATTG-----ATAGTAGAGAGGAAGGCTGTGGGGAGGTGGTTGTGGCACCC-TGGTGA--TGCGGCTCCTGTTTATCTCACTTCTTATTTCGGAATAAATGGATTTAGCCATACT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55251208 485 +  61074082 ATAAAAACATAGTTTATTT-------AGAGGGCTCCCTTTCTTGGGGGGCAGGGGCTCCCT-----------GGTGGCCTCCTCA-------CCCCCACC-AAGCAG----TCCTTCAGAGGGGCTCAGGCATCCTC-TATTCAGAGGCACTTTGGGGAACAAGTGCTCCCCCTGTCCAGCTCAATGACTGGGCAGCACTCTCCCAGGCCTTAGGACAGTTGGGGCTAACC-CAGGCCAGGCAAAGGCATAAGCT--GGTGGGGGGGGGGCCTCCCTCCCCAG----------TGTATATACTGTACCTGTGTAACATTTTGTATATTCTGGGGA-TAGGGCAGCCCCCTGTATCATA----GCAGAGGTTGGAACTGGCAA---------------------------------------ATGGGGAGGAAGTTCTATTAAATATTTGGGGATGAGGAAACTTATTTATTGATAGCATAGGACAGAGGAAGGAGGCGGGGACGGGGTTCCG----CCCAGGTGACTCACAACTTCTGTTT-----GCTTTTTATTTCGGAATAAATGGATTTAGCCATACT
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958             183409 1800 +    584178 I
e saiBol1.JH378108           50457440   1 +  54856640 I

a score=2796638.000000
s hg38.chr15_KI270850v1_alt    319655 336 +    430880 GCTCAGCCTGGTGTGTTCCCGTTTCC-T-----TCACTGG-------GTCCTGGAGTTTGTCC------C----------ACTGAATGAG--------GAG------------------------------------------CCCCAGAGTG------TCTGAGCATGTC---CAGCT---------GGGCTGTTGGGGACCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTGGTGGATTTCATGGGGACTGCCATA---GCACCTATGGAGCACAGTACGGCCCTGACAGCCAACAGGCTCAGAAGCCTGA-----------TCTAG---CAGTGGCC--GGGAAGTCAGATACCAGCACCCAAGGGCACTGACTTCCATCCACCCCAGGCATCTT-CCCTTCCGTCCCCTTGCCTC-CTTCTCCTGTCTGCACTGGGTGGCCT
s panTro5.chr15              63472982 336 +  83230942 GCTCAGCCTGGTGTGTTCCCGTTTCC-T-----TCACTGG-------GTCCTGGAGTTTGTCC------C----------ACTGAATGAG--------GAG------------------------------------------CCCCAGAGTG------TCTGAGCATGTC---CAGCT---------GGGCTGTTGGGGACCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTGGTGGATTTCATGGGGACTGCCATA---GCACCTATGGAGCACAGTACGGCCCTGACAGCCAACAGGCTCAGAAGCCTGA-----------TCTAG---CAGTGGCC--AGGAAGACAGATACCAGCACCCAAGGGCACTGACTTCCATCCACCCCAGGCATCTT-CCCTTCCGTCCCCTTGCCTC-CTTCTCCTGTCTGCACTGGGTGGCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80430154 336 +  99763055 GCTCAGCCTGGTGTGTTCCCGTTTCC-T-----TCACTGG-------GTCCTGGAGTTTGTCC------C----------ACTGAATGAG--------GAG------------------------------------------CCCCAGAGTG------TCTGAGCATGTC---CAGCT---------GGGCTGTTGGGGACCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTGGTGGATTTCATGGGGACTGCCATA---GCACCTATGGAGCACAGTACGGCCCTGACAGCCAACAGGCTCAGAAGCCTGA-----------TCTAG---CAGTGGCC--AGGAAGACAGATACCAGCACCCAAGGGCACTGACTTCCATCCACCCCAGGCATCTT-CCCTTCCGTCCCCTTGCCTC-CTTCTCCTGTCTGCACTGGGTGGCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        30349 335 -   1709092 GCTCAGCCTGGTGTGTTCCCGTTTCC-T-----TCACTGG-------GTCCTGGAGTTTGTCC------C----------ACTGAATGAG--------GAG------------------------------------------CCCCAGAGTG------TCTGAGCATGTC---TAGCT---------GGGCTGTTGGGGACCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTGGTGGATTTCATGGGGACTGCCATG---GCACCTATGGAGCACAGTACGGCCCTGACAGCCAACAGGCTCAGAAGCCTGA-----------TCTAG---CAGTGGCC--GGGAAGACAGATACCAGCACCCAAGGGCACTGACTTCCATCCACCCCAGGCGTCTT-CCCTTCTGT-CCCTTGCCTC-CCTCTCCTGTCTGCACTGGGTGGCCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17181452 336 - 121039945 GCTCAGCCTGGTGTGTTCCCGTTTCC-T-----TCACTGG-------GTCCTGGAGTTTGTCC------C----------AGTGAATGAG--------GAG------------------------------------------CCCCAGAGTG------TCTGAGCATGTC---CAGCT---------GGGCTGTTGGGGATCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTGGTGGACTTCACAGGGACTGCCATG---GCACCTATGGGGCACAGTCCGGCCCTGACAGCCAACAGGCTCAGAAGCCTGA-----------TCTAG---CAGTGGCC--GGAAAGACAGATACCAGCACCCAAGGGCGCTGACTTCCATCCACCCCAGGCATctt-cccttccgtccccttgcctc-cctttcctGTCTGCACCAGGTGGCCT
i nomLeu3.chr6              C 0 I 377
s rheMac8.chr7               60871022 339 + 169600520 GCTCAGCCTGGTGTGTTCCCGTTTCC-C-----TCACTGG-------GTCCTGCAGTTTGTCC------C----------ACAGAACGAG--------GAG------------------------------------------CCCCAGAGTG------TCTGAGCATGTCCAGCAGCT---------GGGCTGTTGGGGATCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTAGTGGACGTGACGGGGACTGCCATG---GTGCCTAATGGGCACAGTCCCGCCCTGACAGCCAACAGGCTCAGAAGCCTGA-----------TCTAG---CTGTGGCC--GGGAAGACAGATACCAGCACCCAAGGGCACTGACTTCCATCTACCCCAGGTGTCTT-CCCTTCCGTCCGCCTGCCTC-CCTCTCCTGACTGCACTGGGTGGCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108397737 339 - 171882078 GCTCAGCCTGGTGTGTTCCCGTTTCC-C-----TCACTGG-------GTCCTGCAGTTTGTCC------C----------ACAGAACGAG--------GAG------------------------------------------CCCCAGAGTG------TCTGAGCATGTCCAGCAGCT---------GGGCTGTTGGGGATCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTAGTGGACGTGACGGGGACTGCCATG---GTGCCTAATGGGCACAGTCCCGCCCTGACAGCCAACAGGCTCAGAAGCCTGA-----------TCTAG---CTGTGGCC--GGGAAGACAGATACCAGCACCCAAGGGCACTGACTTCCATCTACCCCAGGTGTCTT-CCCTTCCGTCCGCCTGCCTC-CCTCTCCTGTCTGCACTGGGTGGCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1         8191 339 -   2311642 GCTCAGCCTGGTGTGTTCCCGTTTCC-C-----TCACTGG-------GTCCTGCAGTTTGTCC------C----------ACAGAACGAG--------GAG------------------------------------------CCCCAGAGTG------TCTGAGCATGTCCAGCAGCT---------GGGCTGTTGGGGATCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTAGTGGAGGTGACGGGGACTGCCATG---GTGCCTAATGGGCACAGTCCCGCCCTGACAGCCAACAGGCTCAGAAGCCTGA-----------TCTAG---CTGTGGCC--GGGAAGACAGATACCAGCACCCAAGGGCACTGACTTCCATCTACCCCAGGTGTCTT-CCCTTCCGTCCGCCTGCCTC-CCTCTCCTGTCTGCAATGGGTGGCCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         6398 336 -   1987038 GCTCAGCCTGGTGTGTTCCCGTTTCC-C-----TCACTGG-------GTCCTGCAGTTTGTCC------C----------ACAGAACGAG--------GAG------------------------------------------CCCCAGAGTG------TCTGAACATGTC---CAGCT---------GGGCTGTTGGGGATCTTCCAGGTCTGTTACCTGTATGCTGCCTGGTGACACCTGGTGGATGTGACGGGGACTGCCATG---GTGCCTAATGGGCACAGTGCAGCCCTGACAGCCAACAGGCTCAGAAACCTGA-----------TCTAG---CTGTGGCC--GGGAAGACAGATACCAGCACCCAAGGGCACTGACTTCCATCTACCCCAGGTGTCTT-CCCTTCCGTCCGCCTGCCTC-TCTCTCCTGTCTGCACTGGGTGGCCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21086935 336 -  24206276 GCTCAGCCTGGTGTGTTCCTGTTTCC-C-----TCACTGG-------GTCCTGCAGTTTGTCC------C----------ACAGAACGAG--------GAG------------------------------------------CCCCAGAGTG------TCTGAGCATGTC---CAGCT---------GGGCTGTTGGGGATCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACGCCTGGTGGATTTGATGGGGACTGCCATG---GCACCTATGGGGCACAGTCCGGCCCTGACAGCCAACAGGCTCAGAAGCCTGA-----------TCTAG---CTGTGGCC--GGGAAGACAGATACCAGCACCCAAGGGCACTGACTTCCATCTACCCCAGGTGTCTT-CCCTTCCGTCCGCCTACCTC-CCTCTCCTGTCTGCACTGGGTGGCCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         2190 336 -   1397330 GCTCAGCCTTGTGTGTTCCCGTTTCC-C-----TCACTGG-------GTCCTGCAGTTTGTCC------C----------ACAGAACGAG--------GAG------------------------------------------CCCCAGAGTG------TCTGAGCATGTC---CAGCT---------GGGCTGTTGGGGATCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACACCTGGTGGATGTGACGGGGACTGCCATG---GTGCCTAATGGGCACAGTCCCGCCCTGACAGCCAACAGGCTCAGAAGCCTGA-----------TCTAG---CTGTGGCC--GGGAAGACAGATACCAGCACCCAAGGGCACTGACTTCCATCTACCCCAGGTGTCTT-CCCTTCCGTCCGCCTGCCTC-TCTCTCCTGTCTGCACTGGGTGGCCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        25767 336 -   1784207 GCTCAGCCTGGTGTGTTCCCGTTTCC-C-----TCACTGG-------GTCCTGCAGTTTGTCC------C----------ACAGAACGAG--------GAG------------------------------------------CCCCAGAGTG------TCTGAGCATGTC---CAGCT---------GGGCTGCTGGGGACCTTCCAGGCCTGTTACCTGTATGCTGCCTGGTGACGCCTGGTGGATTTGATGGGGACTGCCATG---GCACCTATGGGGCACAGTCCGGCCCTGACAGCCAACAGGCTCAGAAGCCTGA-----------TCTAG---CTGTGGCC--GGGAAGACAGATACCAGCACCCAAGGGCACCGACTTCCATCCACCCCAGGTGTCTT-CCCTTCCGTCCGCCTGCCTC-CCTCCCCTGTCTGCACTGGGTGGCCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114308214 320 - 132174527 GCTTAGCCCGGCGTATTCCCATTTCC-C-----TCACTGG-------ATCCTGGAGTTTGTGC------C----------ACTGAATGAG--------GAG------------------------------------------CCCC--AGTG------TCTGGGAATGTC---CAGCT---------GGCCTGTTGGGGACCTTCCAGGCCTGTTACCTGTGTGCTGCCTGGTGACACCTGGGGGATTTCACGGGGACTGCCATG---GCAC------------TTCCGGCCCTGACAGCCAGCAGGCTCAGAAGCCTGA-----------TCTAG---CGGTGGCC--AGGAAGGCAGGTACCAGCACCCAA-GGCACTGACTTCCATCCACCCCAGGCATCTT--TCTTCCATCCTCCTGCCTC-CCTCTCCTGTCTGTGCCTGGTGGCCT
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1014361 321 +   1024465 GCTCGGCCTGGAGTATTCCCGTTTCC-C-----TCACTGG--------TCCTGGAGTTTGTGC------C----------ACTGAACGAG--------GAG------------------------------------------CCCCAGAGTG------TCTGAACATGTC---CAGCT---------GGGCTGTTGGGGACCTTCCAGGCCTGTTACCTGTGTGCTGCCTGGTGACACCT-GGGGATTTCCTGGGGACTGCCATG---GCAC------------GTCTGGCCCTGACAGCCAGCAGGCTCAGAAGCCTGA-----------TCTAG---CGGTGGTC--GGGAAGGCAGGTACCAGCACCCAAGGGCGCTGACTTCCATCCACCCCAGGCGTCTT--TCTTCCAGCCCCCTGCCTC-CCTCTCCTGTCTGCACCTGGTGGCCT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             436608 287 -  31380117 GCTC-------TGTGTTCCTTTTTCT-G-----TCACTGG-------GTCCTGGGATCTGTGC------C----------ACTGAGCAGG--------CAG---------------------------------------------CAGAGGGCAGACTTCTGGTTGTTCA---GAGCCCTAGAGTGGGGACTTTGGGGGACCTTCAAGGCCAGTCACTGGGGTACTGCTTGGTGAAGCCTAGAAGATTCTAGGGGGACTGCTATA---GTGGGTATGGGAAG---------------------------CAGGAGCCTGA-----------CCTAA---CAGTGGGA--GGGACAACGGGC-----TGCCCTGGGG-----------------TCCAGGCAGCTT-CCATTCCATTC-----CTTC-ATTCCCCTGTGTGGACCTGGTGGCCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55251693 382 +  61074082 GTTTAGCCTTGTGTGTGCCTGTTTCCAG-----TCACTGGCCCCTAGGTCCTGGAGTCTGCACTGTGGGC----------ATTGAACAGG--------GAGCAGATCCTGCCAGCAGAGGGCAGACTTCTGGATTGTGCAAAGCCCCAGTGTC------TCTGAGCCTGCC---TAGCA-----AACAGAGCTGTTGGAGATGATCCAGGCCTGTCACCCCCATGCTGCTTGGGGAAGCCTGGGGGATCCCAGGGCCCCTGCCATGCATGGGACTCTAAGGAGCACTCCTGTCTTAATGGTCCAAAGGCTCAG-AGCCTGA-----------TCTAA---TCCTGGGTTGGGGAAAGCAGGGTCCTCGCACCAAGAGTGCTGCCTTCCAGTT----CAGGCACTTTGCCCTCTCATCACCCTGGCCC-TCT---------------GGTGGCCT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             185209 339 +    584178 GCTTGGCCTTGTTTGTTCCTGCCATC-CACCGGTCACTGG-------ATCCTG-----TGTTC------CAGGTGTGGGTACCTAGCCAGATACCCTAGAA------------------------------------------CCCCAGTGTG------TCTGTACACATT---CAG-T---------GGGCTGCTAGGGATCTTCCAGGCCTGTCATCTG-----------------CTAGGGGGATTCCACAGGGACTGCCATG---GGGCTTCTAGGGGACAGAGCTGTCATAATGACCAACAGCCTCACA--CTTGACAGTGGAATTCTCTAAATCTTGGGGAG--GGAAAGCAGGGTGCCAGAACCCAAGAAAGCC--------TTCATTCTAGGCTTTTT--CATCCCAGCATACTGCCCCATCTTACCTCTATGTACCT-GTAGTCT
i dasNov3.JH564958          I 1800 C 0
e saiBol1.JH378108           50457440   1 +  54856640 I

a score=4588835.000000
s hg38.chr15_KI270850v1_alt    319991 543 +    430880 GTTCTGTCTGTCCCTCCAGAATGCCGGCT----GC--CCCTCAGTCTCCCTCCAGGCTGAGATCATGAC---CCTGACCCCTAGTGGCCGGAGCTGGCTTCACAGGATAAAAGCCAGCTAAGCTCCAGGGACTTTCCAGGAAAAGTGTCCCTTGGAAAGGATGTGGT--CTTTTCACTTGCTCCCAACAGCACC-TAAACATGGCTTGG----------CCTTTCCCC-----------------------------------TCCCCTGAGCTCCACAGAGAACAC-AGCCAGCAGAGGACACAT-TCT--CCGTCATCCGGAAATGGGTTTGATTCTCAGCCGAGGGACAGCAGGACTGGTAG-AGACTGTCAGGCCACATGGCTGCCTGCACAGCACCCCCATGCTTGGTGGAGGGTGGGAGGGATGG-----------CGGGGGCTGGCTGTCCACAGGCTGGGCATGACAGGGAGTCTCACTGGAGGTGGCACACTTTGGAG-GGGCGATGTCAGGG-GACA-GCTTTCTCTT---GCTGGACCACAAGACT---CCAAAAGGACAGCACAGGGACTTATTCTTAGTGCTAGAGGCGAGGCGGT--CGGCCATGTGTAA--CTG
s panTro5.chr15              63473318 544 +  83230942 GTTCTGTCTGTCCCTCCAGAATGCTGGCT----GC--CCCTCAGTCTCCCTCCAGGCTGAGATCATGAC---CCTGACCCCTAGTGGCCGGAGCTGGCTTCACAGGATAAAAGCCAGCTAAGCTCCAGGGACTTTCCAGGAAAAGTGTCCCTTGGAAAGGATGTGGT--CTTTTCACTTGCTCCCAACAGCACCCTAAACATGGCTTGG----------CCTTTCCCC-----------------------------------TCCCCTGAGCTCCACAGAGAACAC-AGCCAGCAGAGGACACAT-TCT--CCGTCATCCGGAAATGGGTTTGATTCTCAGCCGAGGGACAGCAGGACTGGTAG-AGACTGTCAGGCCACATGGCTGCCTGCACAGCACCCCCATGCTTGGTGGAGGGTGGGAGGGATGG-----------CGGGGGCTGGCTGTCCACAGGCTGGGCATGACAGGGAGTCTCACTGGAGGTGGCACACTTTGGAG-GGGCGATGTCAGGG-GACA-GCTCTCTCTT---GCTGGACCACAAGACT---CCAAAAGGACAGCACAGGGACTTATTCTTAGTGCTAGAGGCGAGGCGGT--CGGCCATGTGTAA--CTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80430490 545 +  99763055 GTTCTGTCTGTCCCTCCAGAATGCTGGCT----GC--CCCTCAGTCTCCCTCCAGGCTGAGATCATGAC---CCTGACCCCTAGTGGCCGGAGCTGGCTTCACAGGATAAAAGCCAGCTAAGCTCCAGGGACTTTCCAGGAAAAGTGTCCCTTGGAAAGGATGTGGT--CTTTTCACTTGCTCCCAACAGCACCCTAAACATGGCTTGG----------CCTTTCCCC-----------------------------------TCCCCTGAGCTCCACAGAGAACAC-AGCCAGCAGAGGACACAT-TCT--CCGTCATCCGGAAATGGGTTTGATTCTCAGCCGAGGGACAGCAGGACTGGTAG-AGACTGTCAGGCCACATGGCTGCCTGCACAGCACCCCCATGCTTGGTGGAGGGTGGGAGGGATGG-----------CGGGGGCTGGCTGTCCACAGGCTGGGCATGACAGGGAGTCTCACTGGAGGTGGCACACTTTGGAG-GGGCGATGTCAGGG-GGCAGGCTCTCTCTT---GCTGGACCACAAGACT---CCAAAAGGACAGCACAGGGACTTATTCTTAGTGCTAGAGGCGAGGCGGT--CGGCCATGTGTAA--CTG
i panPan2.chr15             C 0 M 532
s gorGor5.CYUI01015556v1        30684 544 -   1709092 GTTCTGTCTGTCCCTCCAGAATGCCGGCT----GC--CCCTCAGTCTCCCTCCAGGCTGAGATCATGAC---CCTGACCCCTAGTGGCCGGAGCTGGCTTCACAGGATAAAAGTCAGCTAAGCTCCAGGGACTTTCCAGGAAAAGTGTCCCTTGGAAAGGATGTGGT--CTTTTCACTTGCTCCCAACAGCACCCTAAACATGGCTTGG----------CCTTTCCCC-----------------------------------TCCCCTGAGCTCCACAGAGAACAC-AGCCAGCAGAAGACACAT-TCT--CCGTCAGCCGGAAATGGGTTTGGTTCTCAGCCGAGGGACAGCAGGACTGGTAG-AGACTGTCAGGCCACATGGCTGCCTGCACAGCACCCCCATGCTTGGTGGAGGGTGGGAGGGATGG-----------CGGGGGCTGGCTGTCCACAGGCCGGGCATGACAGGGAGTCTCACTGGACGTGGCACACTTTGGAG-GGGTGATGTCAGGG-GACA-GCTTTCTCTT---GTTGGACCACAAGACT---CCAAAAGGACAACACAGGGACTTATTCCTAGTGCTAGAGGCGAGGCGGT--CGGCCATGTGTAA--CTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17182165 544 - 121039945 GTTCTGTCTGTCCCTCCAGAATGCCGGCT----GC--CACTCAGTCTCCCTCCAGGCTGAGATCATGAC---CCTGCCCCCTAGTGGCCAGAGCCGGCTTCACAGGATAAGAGCCAGCTAAGCTCCAGGGACTTTCCAGGAAAAGTGTCCCTTGGAAAGGATGTGGC--CTTTTCACTTGCGCCCAACAGCACCCTAGAAATGGCTTGG----------CCTTTCCCC-----------------------------------TCCCCTGAGCTCCACAGAGAACAC-AGCCAGTAGAGGACACAT-TCT--CCGTCTTCCAGAAATGGGTGTGATTCTCAGCCGAGGGACAGCAGGACTGGTAG-AGACTGTCAGGCCACACGGCTGCCTGCACAGCACCCCCATGCTTGGTGAAGGGTAGGAGGGATGG-----------CGGGGGCTCGCTGTCCACAGGCCAGGCATGACAGGGAGGCTCACTGGAGGTGGCACACTTTGGAG-GGGCGATGTCAGGG-GACA-GCTTTCTCTT---GTTGGGCCACAAGACT---CCAAAAGAACAGCACAGGGACTTATTCCTAGTGCTAGAGGCAAGGCGGT--CGGCCATGTGTAG--GTG
i nomLeu3.chr6              I 377 C 0
s rheMac8.chr7               60871361 525 + 169600520 GTTCTGTCTGTCCCTCCAGAGTGCAGGCT----GC--CCCTCAGTCTCCCTCCAGGCTGAGTTCATGAC---CCTGCCCCCTAGTGGCCAGAGCTGGCATCACAGGATAAGAACCAGCTAAGCTCCAGGGACTTTCCAGGAAATGTGTCCCTTGGAAAGGCTGTAGC--CTTTTCAC-CACTCCCAACAGCACCCTAGAAATGGCTTGG----------CCTTTCCCC-----------------------------------TCCCCTGAGCTCCACAGAGAACAC-AGCCAGCAGAGGACACAT-TGC--CCGTCATCCAGAAATGGGT----TTCTCAGCCGAGGGACAG-AGGACTGGTAG-AGACTGTCAGTCCACGCAGCTGCCTGCACAGCACCCCCATGCTTGGTGGAGGGTGGGAGGGATGG-----------CGGGGGCTGGCTGTCCA---------CATGACAGG----CTCACTGGAGGTGGCACACTTTGGAG-GGGCGATGTCAGGG-GACG-GCTTTCTCTT---GTTGGGCCACAAGACT---CCACAAGGACAGCACGGGGACTGATTCCCAGTGCTAGAGGCGAGGCCAT--CGGCCATGTATAG--GTG
i rheMac8.chr7              C 0 I 4
s macFas5.chr7              108398076 525 - 171882078 GTTCTGTCTGTCCCTCCAGAGTGCAGGCT----GC--CCCTCAGTCTCCCTCCAGGCTGAGTTCATGAC---CCTGCCCCCTAGTGGCCAGAGCCGGCATCACAGGATAAGAACCAGCTAAGCTCCAGGGACTTTCCAGGAAATGTGTCCCTTGGAAAGGCTGTAGC--CTTTTCAC-CACTCCCAACAGCACCCTAGAAATGGCTTGG----------CCTTTCCCC-----------------------------------TCCCCTGAGCTCCACAGAGAACAC-AGCCAGCAGAGGACACAT-TGC--CCGTCATCCAGAAATGGGT----TTCTCAGCCGAGGGACAG-AGGACTGGTAG-AGACTGTCAGTCCACGCAGCTGCCTGCACAGCACCCCCATGCTTGGTGGAGGGTGGGAGGGATGG-----------CGGGGGCTGGCTGTCCA---------CATGACAGG----CTCACTGGAGGTGGCACACTTTGGAG-GGGCGATGTCAGGG-GACA-GCTTTCTCTT---GTTGGGCCACAAGACT---CCACAAGGACAGCACGGGGACTGATTCCCAGTGCTAGAGGCGAGGCCAT--CGGCCATGTATAG--GTG
i macFas5.chr7              C 0 I 4
s macNem1.NW_012011945v1         8530 525 -   2311642 GTTCTGTCTGTCCCTCCAGAGTGCAGGCT----GC--CCCTCGGTCTCCCTCCAGGCTGAGTTCATGAC---CCTGCCCCCTAGTGGCCAGAGCCGGCATCACAGGATAAGAACCAGCTAAGCTCCAGGGACTTTCCAGGAAATGTGTCCCTTGGAAAGGCTGTAGC--CTTTTCAC-CACTCCCAACAGCACCCTAGAAATGGCTTGG----------CCTTTCCCC-----------------------------------TCCCCTGAGCTCCACAGAGAACAC-AGCCAGCAGAGGACACAT-TGC--CCGTCATCCAGAAATGGGT----TTCTCAGCCGAGGGACAG-AGGACTGGTAG-AGACTGTCAGTCCACGCAGCTGCCTGCACAGCACCCCCATGCTTGGTGGAGGGTGGGAGGGATGG-----------CGGGGGCTGGCTGTCCA---------CACGACAGG----CTCACTGGAGGTGGCACACTTTGGAG-GGGCGATGTCAGGG-GACG-GCTTTCTCTT---GTTGGGCCACAAGACT---CCACAAGGACAGCACGGGGACTGATTCCCAGTGCTAGAGGCAAGGCCAT--CAGCCATGTATAG--GTG
i macNem1.NW_012011945v1    C 0 I 4
s cerAty1.NW_012002657v1         6734 526 -   1987038 GTTCTGTCTGTCCTTACAGAGTGCAGGCT----GC--CCCTCAGTCTCCCTCCAGGTTGCGTTCATGAC---CCTGCCCCCTAGTGGCCAGAGCCGGCATCACAGGATAAGAACCAGCTAAGCTCCAGGGACTTTCCAGGAAATGTGTCCCTTGGAAAGGCTGTAGC--CTTTTCAC-CACTCCCAACAGCACCCTAGAAATGGCTTGG----------CCTTTCCCC-----------------------------------TCCCCTGAGCTCCACAGAGAACAC-AGCCAGCAGAGGACACAT-TGC--CCATCATCCAGAAATGGGT----TTCTCAGCCGAGGGACAGCAGGACTGGTAG-AGACTGTCAGTCCACGCAGCTGCCTGCACAGCACCCCCATGCTTGGTGGAGGGTGGGAGGGATGG-----------CGGGGGCTGGCTGTCCA---------CATGACAGG----CTCACTGGAGGTGGCACACTTTGGAG-GGGCGATGTCAGGG-GACG-GCTTTCTCTT---GTTGGGCCACAAGACT---CCACAAGGACAGCACGGGGACTGATTCCCAGTGCTAGAGGCGAGGCCAT--GGGCCATGTATAG--GTG
i cerAty1.NW_012002657v1    C 0 I 4
s chlSab2.chr29              21087271 524 -  24206276 GTTCTGTCTGTCCTTACAGAGTGCAGGCT----GC--CCCTCAGTCTCCCTCCAGGCTGAGTTCATGAC---CCTGCCCCCTAGTGGCCAGAGCCGGCTTCACAGCATAAGAGCCAGCTAAACTCCAGGGACTTTCCAGGAAATGTGTCCCTTGGAAAGGCTGTAGC--CTTTTCAC-CACTCCCAACAGCACCCTAGAAATGGCTTGG----------CCTTTCCCC-----------------------------------TCCCCTGAGCTCCACAGAGAACAC-AGCCAGCAGAGGACACAT-TCC--CCGTCATCCAGAAATGGGT----TTCTCAGCCGAGGGACAGCAGGACTGG--A-AGACTGTCAGTCCACGCAGCTGCCTGCACAGCACCCCCATGCTTGGTGGAGGGTGGGAGGGATGG-----------CGGGGGCTGGCTGTCCA---------CATGACAGG----CTCACTGGAGGTGGCACACTTTGGAG-GGGCGATGTCAGGG-GACA-GCTTTCTCTT---GTTGGGCCACAAGACT---CCACAAGGACAGCACTGGGACTTATTCCCAGTGCTAGAGGCGAGGCCAT--CGGCCATGTATAG--GTG
i chlSab2.chr29             C 0 I 4
s manLeu1.NW_012106908v1         2526 451 -   1397330 GTTCTGTCTGTCCTTACAGAGTGCAGGCT----GC--CCCTCAGTCTCCCTCCAGGCTGCGTTCATGAC---CCTGCCCCCTAGTGGCCAGAGCCGGCATCACAGGATAAGAACCAGCTAAGCTCCAGGGACTTTCCAGGAAATGTGTCCCTTGGAAAGGCTGTAGC--CTTTTCAC-CACTCCCAACAGCACCCTAAAAATGGCTTGG----------CCTTTCCCC-----------------------------------TCCCCTGAGCTCCACAGAGAACAC-AGCCAGCAGAGGACACAT-TGC--CCGTCATCCAGAAATGGGT----TTCTCAGCCGAGGGACAGCAGGACTGGTAG-AGACTGTCAGTC-----------------------------------------------------------------------------------------------CAGG----CTCACTGGAGGTGGCACACTTTGGAG-GGGCGATGTCAGGG-GACG-GCTTTCTCTT---GTTGGGCCACAAGACT---CCACAAGGACAGCACGGGGACTGATTCCCAGTGCTAGAGGTGAGGCCAT--CAGCCATGTATAG--GTG
i manLeu1.NW_012106908v1    C 0 I 4
s colAng1.NW_012117110v1        26103 529 -   1784207 GTTCTGTCTGTCCTTCCAGAATGCCGGCT----GC--CCCTCAGTCTCCCTCCAGGCTGAGTTCATGAC---CCTGCCCCCTAGTGGCCAGAGCTGGCTTCACAGCATAGGAGCCAGCTAAACTCCAGGGACTTTCAAGGAAATGTGTCCCTTGGAAAG------GC--CTTTTCAC-CACTCCCAACAGCACCCTAGAAATGGCTTGA----------CCTTTCCCC-----------------------------------TCCCCTGAGCTCCACAGAGAACAC-AGCCAGCAGAAGACACAT-TCC--CCGTCATCCAGAAATGGGT----TTCTCAGCCGAGGGACAGCAGGACTGGTAG-ACACTGTCAGTCCACGCAGCTGCCTGCACGGCACTCCCATGCTTGGTGGAGGGTGGGAGGGATGG-----------CAGGGGCTGGCTGTCCACAGGCCAGGCATGACAGG----CTCACTGGAGGTGGCACACTTTGGAG-TGGCAATGTCAGGG-GACA-GCTTTCTCTT---GTTGGGCCACAAGACT---CCACAAGGACAGCATGGGGACTGATTCCCAGCACTAGAGGTGAGGCCAT--CGGCCATGTATAG--GTG
i colAng1.NW_012117110v1    C 0 I 4
s calJac3.chr10             114308534 538 - 132174527 ATTCTGTCTGTTTCTCCAGAGTGCTGGAT----GC--CATGCAGGCTCCCTCTAGGCTGAGTTCATGGC---CCTGCCCCCTAGTAGCCAGAGCCAGCTTCACAGGATAAGA-CCAGCTAAGCCTCAGAGGCTTTCCAGGAACAGTGTCCCTTGGAAAGGGTGGGGC---CCTTCAC-CGCTCCCAACAGCACCCCACAAATGGTTTGC----------CCTTTACCC-----------------------------------TCCCCTGAGCACCAAAGAGA--AC-AGTCCACAGAGGACGCAT-TCC--CCCTCATGTAGAAATGGGTTTGACTCTCAGCCGAGGGACAGCAGGACTGGT---AGACTGTCAGACCACAGGGCTGCCTGCACAGCACCCCCATGCTTGGCGG-GGGCTGGAGGGATGG-----------CGGGGCTTGGGTGTCCACATGCCGGGCATGACAGGGAGGCTCACTGGAGGTGGCGCACTTTGGAG-GGGCAGTATCAGGG-GACA-ACTTTCTCTT---GGTGGACCACAAGACT---CCACAAGGACAGCCCGGTGACTGACTCCCAGTGCCAGAGGTGAGGCGGT--CGGCCACGTGTAGATGTG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1014682 527 +   1024465 GTTCTGTCTGTCCCTCCAGAGTGCTGGCT----GC--C-CACAGGCTCCCTCCAGGCTGAGTTCATGGCCCTCCTGCCCCCTAGTGGCCAGAGCCGGCTTCACAGGATAAGA-CCAGCTAAGCTCCAGGGGCTTTCCGGGAACAGTGTCCCTTGGAAAGGGTGGGGC--GTTTTCAC-TGCTCCCAACAGCACCCCAGAAATGGCTTGG----------TCTTTCCCC-----------------------------------TCCCCTGAGCTCCACAGAGAACAC-AGTCCACAGAGGGCACAT-TTC--CCGTCATCCAGAAATGGGTTTGACTCTCAGCCAAGGGACAGCAGGACTGGT---AGACTATCAGAACACAGGGCTACCTGCACAGCACCTCCATCCTTGGTGG-AGGCAGGAGGGATGG-----------CGGGTCCTGGG-----------------TGACAGGGAGGCTCACTGGAGGTGTCGCACTTTGGAA-GGGCAGTGTCAGGG-GACA-GCTTTCTCTT---GTTGGGCCACACGACTCCACCACAAGGACAGCATGGTGACTGATTCCCAGTGCCAAAGGCGAGGCGGT--CAGTCACGTGTAG--GTG
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             436895 562 -  31380117 GTTCT-----TCCCTCTGGGGAACCAGTC----TCAGCCCTGTGTCATTCTCC---CTGAGCTCATGGT---CCTGTTCCCCAGTGGTCAGGATGGGGTTCACAGGATGGAGATGAGCTAAGCTCTGGGTGCTTTCCAAGGAGG-----CCCTGGGAAGGATGTGGC--CTCTTCAC-CACTCTGGATAGCACCGTAGCAATGGCTGGG----------CCCTTCCCCATCCCTTTTCCCTAATGTTTAAAAAACTTTTACTTCCCACTGAGCTCCAGAGAAGACACAAACCAGCAGAGGACACAA-TGTTGCCGTCATCCAGAAGTGGGTTTTATTCTCAGCTGAGAGACAGCAAGACTGGTAG-----CATCAGACCACACGGCAGCCTGGACAGCACCCCCATGCTTCCAGG------GGAGGGGTGG------------GAGGGCTAGCAGTCCAGGGGCTGGACATGACAGGAAGGCTCACTGGCGGTGGCACACTTTGAAG-CCAGGATGTCAGGG-GACA-GCGTTCCCTGATAGTTGGGCCACGAGACT---CCACAAGGACAGCACGGTGATTGATTGCCAGCACTGGAGGTGAGGCTGT--CAGCCatatatat--gta
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55252075 573 +  61074082 GTTGT-CCTTCCCCTGCACAGTGCGTGCCAGGGGC--CCCCAATCCTCCTTCTGGGCTGAGTTGGTGCC---CCTGCCCCCTAGTGGGCAGAGCAGGCTTCCCAGAAAGATAACCCATGAATCCGCAGGTGCTTTCCCAGTAGG-----CCCTGGAAAGGACAGGACCTCTCTTCGC-CACTCATCCCAACACCCTAGCAATGGTGGGG----------CCCTTCCCCACCGCTTCATCCCAAGGTTGAAGCCTTCCCCT---TCCCCTGAACTCCACA-AAAACACAAGCCAGCAGAGGACA-GT-CTC--CCATCGTCCAGAAATGGGTTTTATTCTCAGCCAAGAGACAGCAAGACTGGTGGCAGA-----GGACCACACAGCTGCCAGTACAGCGCCCCCCTG--TGCTCGAGCGGGGGAGGGACGG-----------AAGAG--TGGCCGTCCACAGGCCGGGCATGACAGGGAGGCTCATCGGAGGTGGCACACTTTGGAGAGGGGGATGTCAGGGTGACA-GTGTTCCCCTGTAGTTGGACCACAAGACT---CCTCAAGGACAGCGTGGTGATTGGTTCCCAACACTAGAGGCGAGGCTGTGGCAGCCATATAtgt--atg
i canFam3.chr9              C 0 I 10
s dasNov3.JH564958             185548 529 +    584178 ATTCCTCATATCCTTCCAGAGTGCAGGCT----GA--GTC-----------CCAGGCTAAATTCATGAT---CCTGCCCCGCAGTGGCCAGAGCAAAGCTTACAG----ACGACAAGCTGACCTCCAGGTGCTTTCCAAGTAGG------CTTAGAAATGAAGGGGT--CTTCT-GC-CACTCCTCCCAGTGTCTTAGCAATGGCTGGGCCCTCCCTCACCCTTCCCC-----------------------------------ACCCCTTAGCTCCACAGAGAATAC-AGCCAGCAGAGAAGACACACGT--TCTCCATCCAGAAATGGGTTTTATTCTCAGCCAGAATAAAACAG----------AGAC-------CCACACGGCCGCCAGGGCAGCACCCCCTTGTT---CTGAGGGGGAGAGGGATGGGGGTCCGTCAGAGGGGTCTGGCTATCCACAGGCTGGGCATGACAGAGAGGCTCACTGGAAGTGGAACACTTTGGAG-GGG-GATGTCAGGGTGACG-GCATTTCCTTGTAGTTGGGCCACAAGACT---CCACAGGGACTGCACGGTGCTTGATTCCCAACACTAGAGGCAAGGCTGTGTCTGCCatatatat--atg
i dasNov3.JH564958          C 0 C 0
e saiBol1.JH378108           50457440   1 +  54856640 I

a score=1786566.000000
s hg38.chr15_KI270850v1_alt    320534 233 +    430880 CAT-----------------------------------------------------------------------------------------ATATATA--------TATAGCTATTTATAGAACAGGGCAGGGGC-A-TACCACAGAGGGGGCACAAGTTTTCAGCAACGGTCACACCTGGATGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAAGAGGGCTGGCTTTGGGGCT-GGAGAGCCACTGTCAAGTCATAGTACACCTGCTCAGGCAGGCTTGGAAAGGGAAGTCTCCAA-GTAGAGGAGGGATCTGTTTAGAGGTCA
s panTro5.chr15              63473862 305 +  83230942 TATGTGTGTATGtatatatatatatatatatatatatatatatatgtatgtgtatatatatatata-t--atatatat--------------atatata--------tatGGCTATTTATAGAACAGGGCAGGGGC-A-TACCACAAAGGGGGCACAAGTTTTCAGCAACGGTCACACCTGGATGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAAGGGGGCTGGCTTTGGGGCT-GGAGAGCCACTGTCAAGTCATAGTACACCTGCTCAGGCAGGCTTGGAAAGGGAGGTCTCCAA-GTAGAGGAGGAATCTGTTTAGAAGTCA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        31228 238 -   1709092 -------------------------------------------------------------------C--atatatat--------------atatata--------tatagctatttataGAACAGGGCAGGGGC-A-TACCACAGAGGGGGCACAAGTTTTCAGCAACGGTCACACCTGGATGTGTCAGCTCACCACTACAACAGACTAAGTCACAGAT-AAGGCGTCTGGCTTTGGGGCT-GGAGAGCCACTGTCAAGTCACAGTACACCCGCTCAGGCAGGCTTGGAAAAGGAGGTCTCCAA-GAAGAGGAGGGATCTGTTTAGAGGTCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17182709 249 - 121039945 ----------------------------------------------------------CATATATAGC--GCatatat--------------atatata--------tatagctatttataGAACAGGGCAGGGGC-A-TACCACAGAGGGGGCACAAATTTTCAGCAACGGTCACACCTGGATGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAAGGGGGCTGGCTTTAGGGCTGGGGGAGACACTCTCAAGTCACAGAACACCCGCCCAGGCAGGCTTGGAAAGGGAGGTCTCTGA-GAAGAGGAGGGATCTGTTTAGAGGTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60871890 230 + 169600520 -------------------------------------------------------------------C--------AT--------------ATATATATGAG----TATCGCTATTTACAGAACAGGGCAGGGGC-A-TACCACAGAGGGGGCACAAGTTTTCAGCAACGGTCACAGCTGGAAGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAA-------GGCTTTGGGGCT-GGGGATCCACTGTCAAGTCACAGGACACCCGCCCAGGCAGGCTTGGAAAGAGAGGCCTCCGA-GAAGAGGAGAGATCTGTTTAGAGGTCG
i rheMac8.chr7              I 4 C 0
s macFas5.chr7              108398605 230 - 171882078 -------------------------------------------------------------------C--------AT--------------ATATATATGAG----TATCGCTATTTACAGAACAGGGCAGGGGC-A-TACCACAGAGGGGGCACAAGTTTTCAGCAACGGTCACAGCTGGAAGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAA-------GGCTTTGGGGCT-GGGGATCCACTGTCAAGTCACAGGACACCCGCCCAGGCAGGCTTGGAAAGAGAGGCCTCCGA-GAAGAGGAGAGATCTGTTTAGAGGTCG
i macFas5.chr7              I 4 C 0
s macNem1.NW_012011945v1         9059 230 -   2311642 -------------------------------------------------------------------C--------AT--------------ATATATATGAG----TATCGCTATTTACAGAACAGGGCAGGGGC-A-TACCACAGAGTGGGCACAAGTTTTCAGCAACGGTCACAGCTGGATGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAA-------GGCTTTGGGGCT-GGGGATCCACTGTCAAGTCACAGGACACCCGCCCAGGCAGGCTTGGAAAGAGAGGCCTCCGA-GAAGAGGAGAGATCTGTTTAGAGGTCG
i macNem1.NW_012011945v1    I 4 C 0
s cerAty1.NW_012002657v1         7264 242 -   1987038 -------------------------------------------------------------------Catatatatat--------------atatatatgagtatttatCGCTATTTACAGAACAGGGCAGGGGC-A-TACCACAGAGGGGGCACAAGTTTTCAGCAACGGTCACAGCTGGAAGTGTCAGCTCACCACTACAACCGACTAAGTCACAGATGAA-------GGCTTTGGGGCT-GGGGATCCACTGTCAAGTCACAGGACACCCGCCCAGGCAAGCTTGGAAAGAGAGGCCTCCGA-GAAGAGGAGAGATCTGTTTAGAGGTCG
i cerAty1.NW_012002657v1    I 4 C 0
s chlSab2.chr29              21087799 254 -  24206276 -------------------------------------------------------------------C--atatatatatatatataaaaaaatatatatgagtatttatagctatttataGAACAGGGCAGGGGC-A-TACCACAGAGGGGACACAAGTTTTCAGCAATGGTCACACCTGGAAGTGTCAGCTCAGCACTACAACAGACTAAGTCACAGATGAA-------GGCTTTGGGACT-GGGGATCCACTGTCAAGTCACAGGACACCTGCACAGGCAGGCTTGGAAAGGGAGGCCTCCGA-GAAGAGGAGAGATCTGTTTAGAGGTCG
i chlSab2.chr29             I 4 C 0
s manLeu1.NW_012106908v1         2981 240 -   1397330 -------------------------------------------------------------------C--atatatat--------------atatatatgagtatttatcgctatttataGAACAGGGCAGGGGC-A-TACCACAGAGGGGGCACAAGTTTTCAGCAACGGTCACAGCTGGAAGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAA-------GGCTTTGGGGCT-GGGGATGCACTGTCAAGTCACAGGACACCCGCCCAGGCAGGCTTGGAAAGAGAGGCCTCCGA-GAAGAGGAGAGATCTGTTTAGAGGTCG
i manLeu1.NW_012106908v1    I 4 C 0
s colAng1.NW_012117110v1        26636 252 -   1784207 -------------------------------------------------------------------C--atatatatatacacacacac--atatatatgagtatttgtagctatttataGAACAGGGCAGGGGC-A-TACCACAGAGGGGGCACAAGTTTTCAGCAACGGTCACACCTGGAAGTCTCAGCTCACCACTATAACAGACTAAGTCACAGATGAA-------GGCTTTGGGGCT-GGGGATCCACTGTCAAGTCACAGAACACCTACCCAGGCAGGCTTGGAAAGGGAGGCCTCCGA-GAAGAGGAGAGATCTGTTTAGAGGTTG
i colAng1.NW_012117110v1    I 4 C 0
s calJac3.chr10             114309072 216 - 132174527 ---------------------------------------------------------------------------TAT--------------ATATATGTGAGTATTTCTAGATATTTCTAGAACAGGGCAGGGGC-A-TGCCACAGAGGGGG---------------ACGGTCACATCTGGATGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAAGGGGGCTGGCTTTGGGGCT-GGGG----------GAGTCACAGAACAGCCGCCCAGGCAGGCTTGGAAAGGGAGGTCTCTGA-CAGGAGGGGGGATCTGTGTAGAGGTCG
i calJac3.chr10             C 0 C 0
s cebCap1.NW_016107979v1      1015209 214 +   1024465 ---------------------------------------------------------------------------TAT--------------ATATATGTGAGTATTTATAGCTATTTCTAGAACA-GTCAGGGGC-A--GCCACAGAGGGAC---------------TCAGTCACACCTGGATGTGTCAGCTCACCACTACTACAGACTAAGTCACAGATGAAGGGGGCTGCCTTTGGGGCT-AGGG----------GAGTCACAGAATGGCCACCCAGGCAGGCTTGGAAAGGGAGGTCTCCGA-CAGGAGGGGGGATCTGTGTAGAGGTCG
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             437457 228 -  31380117 ---------------------------------------------------------------------------tat--------------atatatatgaatatttatagatatttataGAAT--GGCAGGAGCGA-TACCACAGAGGGG-CACAAGTTTTCACCAGCA-TCACACCTGGATGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAAGGGGGC-GGCTTTGGGGCT-GGGT----------TAGTCACAGAACAGCCGTCCAGGCAGGCTTGGAAAGGGAGGTCTCCGAGGAAGAGGAGGGATCTGGTTAGAGTTCG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55252658 231 +  61074082 -------------------------------------------------------------------------------------------------tgtgtgtATTTATAGTTATTTATAGAATGGGATAGGAGCAA-TACCACAGAGGGG-CACAAGTTTTCACCAATA-TCACGCCTGGATGTGTCAGCTCACCACTACAACAGACTAAGTCACAGATGAAGGGGGA-GGCTTTGGGGCT-GGGGAGCCACTGTCAAGTCACAGAACAGCCGTCCAGGCAGGCTTGGAAAGGGAGGTCTCCGA-GGAATAGAGGGATCTGGTTAGAGGTCG
i canFam3.chr9              I 10 C 0
s dasNov3.JH564958             186077 244 +    584178 -----------------------------------------------------------------------tatgtat--------------acatatgtgagtatttatagatatttataGAACAGGGCAGGAGC-AGTAC--CAGAGGGGGCACAAGTTTTCACCAACA-TCACGCCTGGATGTGTCAGCTCACCTCTACAACAGACTAAGTCACAGAAGAAGGCAGAAGTTTGGGGGGTA-GGGGAGCCACTGTCAAGTCACAGAACAGCCATCCAGGCAGGCTTGAAAAGGGAGGTCTCCGAGGAATAGGAGGGGTCTGGTTAGAGGTCG
i dasNov3.JH564958          C 0 C 0
e panPan2.chr15              80431035 532 +  99763055 M
e saiBol1.JH378108           50457440   1 +  54856640 I

a score=7962391.000000
s hg38.chr15_KI270850v1_alt    320767 865 +    430880 AAGTGGGGCCTGGGGCTCTCAGGACGGGATGGACTTGCCTGACCCGATCAGCTGGCAAGTGGAGAGAAAGCAGAGAGAAAACAGGAGAGAGAAAAGCAAGCGGATTGCTGGTGAGGCAAGTGCAG------AGCATGGGAGTGACACAGCAGCTGTGGGAGGGCTGGGGA----CGGGAGGGCACAGGTGCGGGTGTGT-AGTAAGGTTCCTGG--AA--AAGGGGCTGGAAGGGAAAGG--GGA------GGAG---GATGGAGGGGG-----------------AAGCCGGAGCTT-CACAGGTAGT---G-CCTGGGGGCTGCAGCGGCCCT----CCCCACCC----CACACACGC----CTCTCCCATGGCATCCAGGC----AGTGCACCCACAGTT-CAGACCA-ATGCTCAGCCCCGTCAGGCT-----------TCCCTTTTCTCTGGTCACCCTGTCTTCCAACCCACTGGCCCAGGGCCACCCCTCGCCTTGG------------GGAGC--------------CCCAAGCAACAGCCACCAGGCCT----------GATAGG-GAA-------GGAACACTGCTTGAACCAGGATGATGAAGCTAAAAGGGATGGATGGTTGGAGTGAGCACT-GGAGGCCCCTTTGGGCCATCAGAAAGCCCA-GAACCCTCTGAGAGGACCCTGGGGGAGGCAGGGAGGGCAGGC-AGCCAGATGCCACTGGCCATAGACTTATAAGTCTAAGAGGGGAGCCTCAGCTTGTTG----------GGGGACTGCAGGTCACATAGGTGAGG--------------------CTGGGCCCTTCCTGC-AGGGAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGCGGGCAGGCTCACTGGAC-----------------------AGAGCTCAG---------------CTGGGCCAGCAGGCACTGTGGTCCCCTTGGTTGAATAGCATAGGTGACCTCTAGGAGCAACAGGCCAAGGTGCATGAGCCAACTGGCTGGC-AGTAGTGC-TTCAGC
s panTro5.chr15              63474167 865 +  83230942 AAGTGGGGCCTGGGGCTCTCAGGACGGGATGGACTTGCCTGACCCGATCAGCTGGCAAGTGGAGAGAAAGCCAAGAGAAAACAGGAGAGAGAAAAGCGAGCGGATTGCTGGTGAGGCAAGTGCAG------AGCATGGGAGTGACACAGCAGCTGTGGGAGGGCTGGGGA----GGGGAGGGCACAGGTGCGGGTGTGT-AGTAAGGTTCCTGG--AA--AAGGGGCTGGAAGGGAAAGG--GGA------GGAG---GATGGAGGGGG-----------------AAGCCGGAGCTT-CACAGGTAGT---G-CCTGGGGGCTGCAGCGGCCCT----CCACACCC----CACACTCGC----CTCTCCCATGGCATCCAGGC----AGTGTACCCACAGTT-CAGACCA-ATGCTCAGCCCCCTCAGGCT-----------TCCCTTTTCTCTGGTCACCCTGTCTTCCAACCCACTGGCCCAGGGCCACCCCTCGCCTTGG------------GGAGC--------------CCCAAGCAACAGCCACCAGGCCT----------GATAGG-GAA-------GGAACACTGCTTGAACCAGGATGATGAAGCTAAAAGGGATGGATGGTTGGAGTGAGCACT-GGAGGCCCCTTTGGGCCATCAGAAAGCCCA-GAACCCTCTGAGAGGACCCTGGGGGAGGCAGGGAGGGCAGGC-AGCCAGATGCCACTGGCCATAGACTTATAAGTCTAAGAGGGGAGCCTCAGCTTGTTG----------GGGGACTGCAGGTCACATAGGTGAGG--------------------CTGGGCCCTTCCTGC-AGGGAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGCGGGCAGGCTCACTGGAA-----------------------AGAGCTCAG---------------CTGGGCCAGCAGGCACTGTGGTCTCCTTGGCTGAATAGCACAGGTGACCCCTAGGAGCAACAGGCCAAGGTGCATGAGCCCACTGGCTGGC-AGTAGTGC-TTCAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80431576 865 +  99763055 AAGTGGGGCCTGGGGCTCTCAGGACGGGATGGACTTGCCTGACCCGATCAGCTGGCAAGTGGAGAGAAAGCCAAGAGAAAACAGGAGAGAGAAAAGCGAGCGGATTGCTGGTGAGGCAAGTGCAG------AGCATGGGAGTGACACAGCAGCTGTGGGAGGGCTGGGGA----GGGGAGGGCACATGTGCGGGTGTGT-AGTAAGGTTCCTGG--AA--AAGGGGCTGGAAGGGAAAGG--GGA------GGAG---GATGGAGGGGG-----------------AAGCCGGAGCTT-CACAGGTAGT---G-CCTGGGGGCTGCAGCGGCCCT----CCACACCC----CACACTCGC----CTCTCCCATGGCATCCAGGC----AGTGTACCCACAGTT-CAGACCA-ATGCTCAGCCCCCTCAGGCT-----------TCCCTTTTCTCTGGTCACCCTGTCTTCCAACCCACTGGCCCAGGGCCACCCCTCGCCTTGG------------GGAGC--------------CCCAAGCAACAGCCACCAGGCCT----------GATAGG-GAA-------GGAACACTGCTTGAACCAGGATGATGAAGCTAAAAGGGATGGATGGTTGGAGTGAGCACT-GGAGGCCCCTTTGGGCCATCAGAAAGCCCA-GAACCCTCTGAGAGGACCCTGGGGGAGGCAGGGAGGGCAGGC-AGCCAGATGCCACTGGCCATAGACTTATAAGTCTAAGAGGGGAGCCTCAGCTTGTTG----------GGGGACTGCAGGTCACATAGGTGAGG--------------------CTGGGCCCTTCCTGC-AGGGAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGCGGGCAGGCTCACTGGAC-----------------------AGAGCTCAG---------------CTGGGCCAGCAGGCACTGTGGTCTCCTTGGCTGAATAGCACAGGTGACCCCTAGGAGCAACAGGCCAAGGTGCATGAGCCCACTGGCTGGC-AGTAGTGC-TTCAGC
i panPan2.chr15             M 532 C 0
s gorGor5.CYUI01015556v1        31466 861 -   1709092 AAGTGGAGCCTGGGGCTCTCAGGACGGGATGGACTTGCCTGACCCGATCAGCTGGCAAGTGGAGAGAAAGCCAAGAGAAAACAGGAGAGAGAAAAGCGAGCGGATTGCTGGTGAAACAA--GCAG------AGCATGGGAGTGACACAGCAGCTGTGGGAGGGCTGGGGA----GGGGAGGGCACAGGTGCGGGTGTGT-AGTAAGGTTCCTGG--AA--AAGGGGCTGGAAGGGAAAGG--GGA------GGAG---GATGGAGGGAG-----------------AAGCTGGAGCTT-CACAGGTAGT---G-CCTGGGGGCTGCAGCGGCCCT----CCACACCC----CACACACGC----CTATCCCATGGCATCCAGGC----AGTGTACCCACAGTT-CAGACCA-ATGCTCAGCCCCCTCAGGCT-----------TCCCTTTTCTCTGGTCACCCTGTCTTCCAACCCACTGGCCCAGGGCTACCCCTCGCCTTGG------------GGAGC--------------CCCAAGCAACAGCCACCAGGCCT----------GATAGG-GAA-------GGAACACTGCTTGAACCAGGATGATGAAGCTAAAAGGGATGGATGGTTGG-GTGAGCACT-GGAGGCCCCTTTGGGCCATCAG-AAGCCCA-GAACCCTCTGAGAGGACCCTGGGGGAGGCA-GGAGGGCAGGC-AGCCAGATGCCACTGGCCATAGACTTATAAGTCTAAGAGGGGAGCCTCAGCTTGCTG----------GGGGACTGCAGGTCACATAGGTGAGG--------------------CTGGGCCCTTCCTGC-AGGGAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGCGGGCAGGCTCACTGGAC-----------------------AGAGCTCAG---------------CCGGGCCAGCAGGCACTGTGGTCCCCTTGGTTGAATAGCATAGGTGACCTCTAGGAGCAACAGGCCAAGGTGCATGAGCTCACTGGCTGGC-AGTAGTGCTTTCAGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17182958 861 - 121039945 AAGTGGGGCCTGGGGCTCTCAGGACGGGATGGACTTGCCTGACCCGATCAGCTGGTAAGTGGAGAGAAAGC--AGAGAGAACAG--GAGAGAAAAGCGAGTGGATTGCGGGTGAGGCAAGTGCAG------AGCATGGGCGTGACTCGGCAGCTGTGGGAGGGCCGGGGA----GGGGAGGGCCCAGGTGCGGGTGTGT-AGTAAGGTTCCTGG--AA--AAGGGGCTGGAAGGGAAAGG--GGA------GCAG---GATGGAGGGAG-----------------AAGCCGGAGCTT-CACAGGTAGT---G-CCTGGGGGCTGCAGCGGCCCT----CCACACCC----CACACACGC----CTCTCCCATGGCATCCAGGC----AGTGTACCCACAGTT-CAGACCA-ATGCTCAGCCCCCTCAGGCT-----------TCCCTTTTCTCTGGTCATCCTGTCTTCCAACCCACTGGCCCAGGGCCACCCCTCGCCTTGG------------GGAGC--------------CCCAAGCAACAGCCACCAGGCCT----------GATAGG-GAA-------GGAACACTGCTTGAACCAGGATGATGAAGCTAAAGGGGATGGATGGTTGGAGTAAGCACC-GGAGGCCCCTTTGGGCCATCAGAAAGCCCA-GGACCCTCTGAGAGGACCCTGGGTGAGGCAGGGAGGGCAGGC-AGCCAGATGCCACTGGCTATAGACTAGTAAGTCTAAGAGGGGAGCCTCAGCTTATTG----------GGGGACTGCAGGTCACATAGGTGAGG--------------------ATGGGCCCTTCCTGC-AGGGAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGTGGGCAGGCTCACTGGAC-----------------------AAAGCTCAG---------------CTGGGCCAGTAGGCACTGTGGTCCCCTTGGTTGAATAGCATAGGTGACCTCTAGGAGCAACAGGCCAAGGTGCATGAGCCCACTGGCTGGC-AGTAGTGC-TTCAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60872120 864 + 169600520 AAGCAGGGCCTGGGACTCTCAGGACGGGATGGACTTGCCTGACCTGATCAGTGGGCAGTTGGAGAG-AAGCAGAGAGAAAACGGGAGAGAGAAAAGGAAGCAGATTGCTGGTGAGGCAAGCGCAG------AGCACGGGCACAATGCAAGAGCTGTGTGAGGGCCAGGGA----GGGGAGGGAGCAGGTGCGGGTGTGT-AGTAAGGTTCCTGG--AA--AAGGGGCTGGAAGGGAAAAG--GGA------GGAA---GATGGAAGGAA-----------------GAGCCGGAGCTT-CACAGGTAGT---G-CCTGGGGGCTGCAGCGGCCCT----CCACACCC----CACATACGC----CTCTCCCACGGCATCCAGGC----AGTGCACCCACAGTT-CAGACCA-ATGCTCAGTCCCCTCAGGCT-----------TCCCTTTTCTCTGGTTACCCTGTCTTCCAACCCACTGGCCCAGGGCCACCCCTCACCTTGG------------GGAGC--------------CCCAAGCAACAGCCACCAGGCCT----------GATAGG-GAA-------GGAATACTGCTTGAACCAGGATGATGACGCTAAAAGGGATGGACGGTTGGAATGAGCGCC-GGAGGCCCCTCTGGGCCATCAGAAAGCCCA-GGACCCTCTGAGAGGACCCTTGGGTAGGCAAGGAGGGCAGGC-AGCCAGATGCCACTGGCCATAGATTTGTAAGTCTAAGAGGGAAGCCTCAGCTTGTTG----------GGGGACTGCAGGTCACATAGGTGAGG--------------------CTGGGCCCTTCCTGC-AGAAAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGCGGGCAGGCTCACTGGAC-----------------------AGAGCTCAG---------------CCAGGCCAGCAGGCACTGTGGTCTCCTTGGCTGAATAGCATAGGTGACCCCTAGGAGCAACAGGCCAAGGTGAGTGAGCCTGCTGGTCAGC-GGTAGTGC-TTCAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108398835 864 - 171882078 AAGCAGGGCCTGGGACTCTCAGGACGGGATGGACTTGCCTGACCTGATCAGCGGGCAGTTGGAGAG-AAGCAGAGAGAAAACGGGAGAGAGAAAAGGAAGCAGATTGCTGGTGAGGCAAGCGCAG------AGCATGGGCACAATGCAAGAGCTGTGTGAGGGCCAGGGA----GGGGAGGGAGCAGGTGCGGGTGTGT-AGTAAGGTTCCTGG--AA--AAGGGGCTGGAAGGGAAAAG--GGA------GGAA---GATGGAAGGAA-----------------GAGCCGGAGCTT-CACAGGTAGT---G-CCTGGGGGCTGCAGCGGCCCT----CCACACCC----CACATACGC----CTCTCCCACGGCATCCAGGC----AGTGCACCCACAGTT-CAGACCA-ATGCTCAGTCCCCTCAGGCT-----------TCCCTTTTCTCTGGTTACCCTGTCTTCCAACCCACTGGCCCAGGGCCACCCCTCACCTTGG------------GGAGC--------------CCCAAGCAACAGCCACCAGGCCT----------GATAGG-GAA-------GGAATACTGCTTGAACCAGGATGATGACGCTAAAAGGGATGGACGGTTGGAATGAGCGCC-GGAGGCCCCTCTGGGCCATCAGAAAGCCCA-GGACCCTCTGAGAGGACCCTTGGGTAGGCAAGGAGGGCAGGC-AGCCAGATGCCACTGGCCATAGATTTGTAAGTCTAAGAGGGAAGCCTCAGCTTGTTG----------GGGGACTGCAGGTCACATAGGTGAGG--------------------CTGGGCCCTTCCTGC-AGAAAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGCGGGCAGGCTCACTGGAC-----------------------AGAGCTCAG---------------CCAGGCCAGCAGGCACTGTGGTCTCCTTGGCTGAATAGCATAGGTGACCCCTAGGAGCAACAGGCCAAGGTGAGTGAGCCTGCTGGTCGGC-GGTAGTGC-TTCAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1         9289 868 -   2311642 AAGCAGGGCCTGGGACTCTCAGGACGGGATGGACTTGCCTGACCTGATCAGCGGGCAGTTGGAGAG-AAGCAGAGAGAAAACGGGAGAGAGAAAAGGAAGCAGATTGCTGGTGAGGCAAGCGCAG------AGCATGGGCACAATGCAAGAGCTGTGTGAGGGCCAGGGA----GGGGAGGGAGCAGGTACGGGTGTGT-AGTAAGGTTCCTGG--AA--AAGGGGCTGGAAGGGAAAAG--GGA------GGAA---GATGGAAGGAA-----------------GAGCCGGAGCTT-CACAGGTAGT---G-CCTGGGGGCTGCAGCGGCCCT----CCACACCC----CACATACGC----CTCTCCCACGGCATCCAGGCAGTGAGTGCACCCACAGTT-CAGACCA-ATGCTCAGTCCCCTCAGGCT-----------TCCCTTTTCTCTGGTTACCCTGTCTTCCAACCCACTGGCCCAGGGCCACCCCTCACCTTGG------------GGAGC--------------CCCAAGCAACAGCCACCAGGCCT----------GATAGG-GAA-------GGAATACTGCTTGAACCAGGATGATGACGCTAAAAGGGATGGACGGTTGGAATGAGCGCC-GGAGGCCCCTGTGGGCCATCAGAAAGCCCA-GGACCCTCTGAGAGGACCCTTGGGTAGGCAAGGAGGGCAGGC-AGCCAGATGCCACTGGCCATAGATTTGTAAGTCTAAGAGGGAAGCCTCAGCTTGTTG----------GGGGACTGCAGGTCACATAGGTGAGG--------------------CTGGGCCCTTCCTGC-AGAAAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGCGGGCAGGCTCACTGGAC-----------------------AGAGCTCAG---------------CCAGGCCAGCAGGCACTGTGGTCCCCTTGGCTGAATAGCATAGGTGACCCCTAGGAACAACAGGCCAAGGTGAGTGAGCCTGCTGGTCGGC-GGTAGTGC-TTCAGC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         7506 864 -   1987038 AAGCAGGGCCTGGGACTCTCAGGACGGGATGGACTTGCCTGACCTGATCAGCGGGCAGTTGGAGAG-AAGCAGAGAGAAAACGGGAGAGAGAAAAGGAAGCAGATTGCTGGTGAGGCAAGCGCAG------AGCATGGGCACAATGCAAGAGCTGTGTGAGGGCCAGGGA----GGGGAGGGAGCAGGTGCGGGTGTAT-AGTAAGGTTCCTGG--AA--AAGGGGCTGGAAGGGAAAAG--GGA------GGAA---GATGGAAGGAA-----------------GAGCCGGAACTT-CACAGGTAGT---G-CCTGGGGGCTGCAGCGGCCCT----CCACACCC----CACATACGC----CTCTCCCACGGCATCCAGGC----AGTGCACCCACAGTT-CAGACCA-ATGCTCAGTCCCCTCAGGCT-----------TCCCTTTTCTCTGGTTACCCTGTCTTCCAACCCACTGGCCCAGGGCCACCCCTCACCTTGG------------GGAGC--------------CCCAAGCAACAGCCACCAGGCCT----------GATAGG-GAA-------GGAATACTGCTTGAACCAGGATGATGACGCTAAAAGGGATGGACGGTTGGGTTGAGTGCC-GGAGGCGCCTCTGGGCCATCAGAAAGCCCA-GGACCCTCTGAGAGGACCCTTGGGTAGGCAAGGAGGGCAGGC-AGCCAGATGCCACTGGCCATAGATTTGTAAGTCTAAGAGGGAAGCCTCAGCTTGTTG----------GGGGACTGCAGGTCACACAGGTGAGG--------------------CTGGGCCCTTCCTGC-AGAAAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGCGGGCAGGCTCACTGGAC-----------------------AGAGCTCAG---------------CCAGGCCAGCAGGCAGTGTAGTCCCCTTGGCTGAATAGCATAGGTGACCCCTAGGAGCAACAGGCCAAGGTGCGTGAGCCCGCTGGCTGGC-AGTAGTGC-TTCAGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21088053 844 -  24206276 AAGCAGGGCCTGGGACTCTCAGGACAGGATGGACTTGCCTGACCTGATCAGCGGGCAGTTCGAGAG-AAGCAG--------------------AAAGAAGCAGATTGCTGGTGAGGCAAGCGCAG------AGCATGGGCACACTGCAAGAGCTGTGTGAGGGCCAGGGA----GGGGAGGGCGCAGGTGCGGGTGTGT-AGTAAGGTTCCTGG--AA--AAGGGGCTggaagggaaaag--gaa------ggaa---gatggaaggaa-----------------gAGCCGGAGCTT-CACAGGTAGT---G-CCTGGGGGCTGCAGCGGCCCT----CCACACCC----CACATACGC----CTCTCCCACGGCATCCAGGC----AGTGCACCCACAGTT-CAGACCA-ATGCTCAGTCCCCTCAGGCT-----------TCCCTTTTCTCTGGTTACCCTGTCTTCCAACACACTGGCCCAGGGCCACCCCTCACCTTGG------------GGAGC--------------CCCAAGCAACAGCCACCAGGCCT----------GATAGG-GAA-------GGAATACTGCTTGAACCAGAATGATGACGCTAAAAGGGATGGATGGTTGGATTGAGCGCC-GGAGGCCCCTCTGGGCCATCAGAAAGCCCA-GGACCCTCTGAGAGGACCGTTGGGTAGGCAAGAAGGGCAGGC-AGCCAGATGCCACTGGCCATAGATTTGTAAGTCTAAGAGGGAAGCCTCAGCTTGTTG----------GGGGACTGCAGGTCACATAGGTGAGG--------------------CTGGGCCCTTCCTGC-AGAAAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGCGGGCAGGCTCACTGGAC-----------------------AGAGCTCAG---------------CCAGGCCAGCAGGCAGTGTGGTCCCCTTGGCTGAATAGCACAGGTGACCCCTAGAAGCAACAGGCCAAAGTGTGTGAGCCCGCTGGCTGGC-AGTAGTGC-TTCAGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         3221 864 -   1397330 AAGCAGGGCCTGGGACTCTCAGGACGGGATGGACTTGCCTGACCTGATCAGCGGGCAGTTGGAGAG-AAGCAGAGAGAAAACGGGAGAGAGAAAAGGAAGCAGATTGCTGGTGAGGCAAGCGCAG------AGCATGGGCACAATGCAAGAGCTGTGTGAGGGCCAGGGA----GGGGAGGGAGCAGGTGCGGGTATGT-AGTAAGGTTCCTGG--AA--AAGGGGCTGGAAGGGAAAAG--GGA------GGAA---GATGGAAGGAA-----------------GAGCCGGAGCTT-CACAGGTAGT---G-CCTGGGGGCTGCAGCGGCCCT----CCACACCC----CACATACGC----CTCTCCCACGGCATCCAGGC----AGTGCACCCATAGTT-CAGACCA-ATGCTTAGTCCCCTCAGGCT-----------TCCCTTTTCTCTGGTTACCCTGTCTTCCAACCCACTGGCCCAGGGCCACCCCTCACCTTGG------------GGAGC--------------CCCAAGCAACAGCCACCAGGCCT----------GATAGG-GAA-------GGAATACTGCTTGAACCAGGATGATGATGCTAAAAGGGATGGACGGTTGGATTGAGCGCC-GGAGGCCCCTCTGGGCCATCAGAAAGCCCA-GGACCCTCTGAGAGGACCCTTGGGTAGGCAAGGAGGGCAGGC-AGCCAGATGCCACTGGCCATAGATTTGTAAGTCTAAGAGGGAAGCCTCAGCTTGTTG----------GGGGACTGCAGGTCACATAGGTGAGG--------------------CTGGGCCCTTCCTGC-AGAAAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGCGGGCAGGCTCACTGGAC-----------------------AGAGCTCAG---------------CCAGGCCAGCAGGCAGTGTAGTCCCCTTGGCTGAATAGCATAGGTGACCCCTAGGAGCAACAGGCCAAGGTGCGTGAGCCCGCTGGCTGGC-AGTAGTGC-TTCAGC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        26888 884 -   1784207 AACTGGGACCTGGGACTCTCAGGATGGGATGGACTTGCCTGACCCAATCAGCGGGCAGTTGGAGAG-AAGCAGAGAGAAAACAGGAGAGAGAAAAGGAAGCAGATTGCTGGTGAGGCAAGCACAG------AGCATGGGCACAATGCAAAAGCTGTGTGAGGGCCAGGGA----GGGGAGGGCGCAGGTGTGGGTGTGT-AGTAAGGTTCCTGG--AA--GAGGGGCTGGAAGGGAAAAG--GGA------GGAA---GATGGAAGGAA-----------------GAGCCGGAGCTT-CACAGGTAGT---G-CCTGGGGGCTGCAGCGGCCCT----CCACACCC----CACATACGC----CTCTCCCACGGCATCCAGGT----AGTGCACCCACAGTT-CAGACCA-ATGCTCAGTCCCCTCAGGCT-----------TCCCTTTTCTCTGGTCACCCTGTCTTCCAACACACTGACCCAGGGCCACCCCTCACCTTGG------------GGAGC--------------CCCAAGCAACAGTCACCAGGCCT----------GATAGG-GAA-------GGAACACTGCTTGAACCAGGATGATGAAGCTAAAAGGGATGGATGGTTGGATTGAGCGCC-GGAGGCCCCTCTGGGCCATCAGAAAGCCCA-GGACCCTCTGAGAGGACCCTTGGGTAGGCAAGGAGGGCAGGC-AGCCAGATGCCACTGGCCATAGATTTGTAAGTCTAAGAGGGGAGCCTCAGGTTGTTG----------GGGGACTGCAGGTCACATAGGTGAGGCTGGGCCCTTCCTTATGTGACTGGGCCCTTCCTGC-AGGAAAAAGCAGAAGAGGGAGAGTCTGTGGCAG-----GAGAGGTGGGCAGGCTCACTGGAC-----------------------AGAGCTCAG---------------CCAGGCCAGCAGGCACTGTGGTCCCCTTGGCTGAATAGCATAGGTGACCCCTAGGAGCAACAGGCCGAGGTGAGTGAGCCCGCTGGCTGGC-AGTAGTGC-TTCAGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114309288 865 - 132174527 AAGGGGGACCTGGGGCTCTCAGGATGCGATGAACTTCCCTGTCCCAATCAGCTGGCAGTTGCAGAGAAAGCAGAGAGGAAACAGGAGAGAGAAAAGCGAGGAGAGAGCTGGTGAGGTAAGCGCAG------AGCA--GGGGCGCTGCAGCAGCTGGGGGAGGGCTGGGGA----AGGGAGGACACAGGTGCAGGTGTG---GCAAGGTTCCTGG--AA--AAGGGGCTGGAAGGGAAAGG--GAA------GGAA---GATGGAGGAAG-----------------GAGCCCGAGTTT-CACAGGTAGT---GCCCCGGGGGCTGCGGCAGCCCT----CCCCATCC-AAACACGCTGGC----CTCTCCCACGGCACCCAGGC----AGTGCACTCACAGTT-CAGACCC-ATGTTCACCGGCCTCTGGCT-----------GCCCTCTTTTCTGGTCACCCTGTCTTCCAATCCACTGGCCCAGGGTCACCCCTTGCCTTGG------------GGAGC--------------CCCACACAACAGCCACCAGGCCT----------GATAGA-GAA-------GGAACACTGCCTGAACCAGGAGGGTGAAGCTAAAAGGGCTGGATGGCTGGAGGGAGCGCC-TGAAGACCCTCTGGGTGTTTAGAAAGTCCA-GGACCCTCTGAAGGGACCCTGGGGGAGGTGGGGAGGGCAGGC-AGCTGGATGCCAGTGGCCATAGACTTATAAGTCTAAGTGGGGACCCTCAGCTGGTCGGTGAGGGGGCGGGGGTTGCAGGTCACAAAGTTGAGG--------------------CTGGGCCCTTCCTGC-AGGGAAAAGCAGAAGAGGGAGAGTCCGTGGCAG-----GGGAGGCGGGTGAGTTCTCTGGAC-----------------------AGAGCTCAG---------------CTGGGCCAGCAGCCACTGTGGTC-CGTTGGCTGAATAG----AGGG-----TAAGAGCAACAGGCCAAGGTGCATGAGCCTGCTGGCTGGC-GGTAGTGT-TTCAAA
i calJac3.chr10             C 0 I 8
s cebCap1.NW_016107979v1      1015423 863 +   1024465 AAGCGGGGCCCAGGGCTCTCAGGATGGGATGGACTTCCCTGACCCAATCGGCTGGCAGTTGCagagaaagcagagagaaaatgggagagagaaaagcaaggagagagCTGGTGAGGCAAGCACAG------Agca-gggggagctgcagcagctgggggagggctgggca----ggggagggcgcaggtgcaggTGTG---GCAAGATTCCTGG--AA--AAGGGGCTggaagggaaagg--gga------ggaa---gaaggaggaag-----------------gagCCGGAGCTT-CACAATTAGT---G-CCCGGGGGCTGTGGCGGCCCT----CCCCACCCAAAACACACTGGC----CTCTCCCACGGCACCCAGGC----AGTGCACCCACAGTT-CAGACCC-ATGCTCACTGCCCTCGGGCT-----------GCCCTCGTCTCTGAACACCCTGTCTTCCAATCCACTGGCCCAGGGCCACAGCCAGCCTTGG------------GGAGC--------------CCCACACAACAGCCACCAGGCCT----------GATAGA-GAA-------GGAACACTGCCTGAACCAGAAGGGTGAAGCTAAAAGGGCT-GATGGCTGGAGGGAGCGCC-TGAGGCCCCTCTGCGTGGTCAGAAAGCCCA-GGACCCTCTGAAGGGAGCCTGGGGGAGACAGGGAGGGCAGGC-AGCCAGATGCCAGTGGCCTTAGACTTATAATTGTAAGTGGGGAGCCTCAGCTGGTCGGTGAGTGGG-GTGGGCTGCAGGTCGCAAAGGTGAGG--------------------CTGGG-CCTTCCTGA-GGGGAATAACAGAAGAGGGAGAGTCCGTGGTGC-----GGGAGGCAGGCGAGCTGTCTGGGC-----------------------AGAGCTCAG---------------CCGGGCCAGCAGCCGCTGTGGTC-CTTTGGCTGAATAG----GGGG-----TAATAGCAACAGGCCAAGGTGCCTGAGCCTGCTGGCTGGC-GGTAGTGC-TTCAGA
i cebCap1.NW_016107979v1    C 0 I 8
s otoGar3.GL873533             437685 861 -  31380117 AAGGGGGGCCTGGGGCTCTCAGGACGGGATGGACTTGCCTGACCCGATCGGCTGGCAGTTGGAGAGAAAGCAAAGAGAAAACAGGAGAGA---AAGCAAGGAGAGAGCTGGTAAGGCAAGCACAGCTGCCCAGCCTTGCTGCCAGGCAGTGG--AGGGAAGGGATGGG-------GGAAAGATGCAGGGGTGGGTGTGTGGGCGAAGTTCCTGGGAAA--GAGGGGACAGACTGGAAAAG--GGAGGAAGGGGAA---GATGGAGGGAGGCACAGGAGTCATGT--GGGCCAGAGCTT-CATAGATA-------CCTGGAAG-------GGGCCC----CCACCATG----CACACTAGC----CTCTCACACATCACTCAGGC----AGTGCACCCACAGTTCCACACTC-AGGCTCAGCCCCTTTGGGCT-----------TCCCTCTTCTCTGGTCACCCTGTCTTCCAACCCCCTGGCCCAGGGCCACCTCTACCTTTAG------------GGAGC--------------CCTACAC-ACAGCCACCAGGCCC----------AATGGA-GAA-------AGAAGACTGCTTGAACCAGGAGGGTGAAGCTAACAGAGAT----GGCTGGAGGAAGGGCT-GGAGGCCCCTCTGGGCAGTAAGAAAACCTAGGGGCCCTCTGACAGGACTCCGGGAGAGGAAAGGAGGGCAGGT-AGCCGGATGCCAGTGGCCACAGACTTATAAGTCTAAGAGGGGAGCCTCAGCTGGTCG----------GGGGACTGCAGGTCGCGTAGGTGAGG--------------------CTGGGCCCTTCCTGC-TGGGAAAAGCAGAAGAGTGAGAGTCAGTGGCCA-----GAGAAGAGTGGTGGCT--------------------------------GGGTTCA-----------------CAGGCCAGCAGACACTGTTGTCCCTT--GCTAGAAAGTATGGGTCAGCCTGAAGAGTAACAGGCCAAGGTGGGTGAGCTCGAGGCCTGGC-TATGGTGC-TTCAAC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55252889 924 +  61074082 AAGGGGGGCCTGGGGCTCTCAGGACGGGACGGACTTGCCTGACCCGATCGGCTGGCAGTTGGAGAGAAAGCAAAAAGAGAACGG-----AGAGAAGGAGGAAGAGAACTGGTAAGGCAAGGGCAG---CCAAGCCCGG---TGGGGTAGGAG----GGGAGGACAGGGG------GCGAAAACAAAGCTGAGGGTGTG--GGCAAGGGTTCTGG--AATGGAGGAGAGAGAAAGGGAAGGTAGGA------GGAACTGGAGGTGGGTGG-----------------GGGCCACAGCTTCCAGGGGTCTT---G-GATGGAGGCCGGGGCGGCCCT----CCCTCTGC----CACGCACGCCGGTCTCTCATACACCA-CCAGGC----AGTGCACCCACAGCTCCAGGCAC-ATGCTCGG-CCCCTCTGCCT-----------TCCCTCTTTTCTGGCCCCCATGTCTTCCAATGTACTGGCCCAGGACCAGCCCTAGTCTCGGAATGTGGGTCCTGATGC--------------CCCATGCCACAGCCACCAGTCCTCGTGGAGAGAGACAGGAGAA-------AGAACAGTGTTTGAACCAGGAGGGCAAAGCTAAAAG-----GATGGCTGGAGGGGGCACCTGGAGGCCCCTCTGGGTGGGCAGAAAGCCCG-GAGTCCTCAGAAGGGACCCT-GGGGAGGCAGGGAGGTCAGGCAAGCCGGATGCCAGCGGCCACAGGCTTATAAGTCTAAGAGGGGAGCCTCAGCTGGCCG----------GGGGACCACAGGTCGCGTAGGTGAGG--------------------CTGGGCCCTTCCTGCTGGGGAAAAGCAGAAGAGTGAGAGTCAGCGGCAGGGACAGAGTGGCAGGTGGGTT-GCTGGGCGCATG-TGCGGCCCAACCAGGGTGGGACTCAGA-AAAGCTGATTTGCCTAGATTGGTGGACACTGTCGTCCCCTTGGCTGAAAAGTGTAGGTCACCCC-AGGAGCACCAGGCCTAGGCCCGGGAGCCTGAGGGCTGGCTTACGGTGC-TTCATC
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             186321 942 +    584178 AAGGGGGGCCTGGGGCTCTCAGGACGGGATGGACTTGCCTGACCCGATCGGCTGGCAGTTGGAGAGAAAGT-----GAAAAGGGAAGAGAGAAAAGG--GGAGAGAGCTGGTAAGGCAAGAGCAG---CCAAGC----------TACGGCGGTGGTGAGAGGGGATGGGAATGGGAAGAAGACACAGGTGCGGGTGTGA-GGCAAAGTTTCAGG--AA--AAAAGA-TAGACAAGAAAGG--GAA------GATG---GAGAGGAGGAG---CTGGAGATGGGCAGGGGCCAGAGCTT-CACAGGGAATCTGG-GGTGGAGGTTGGTTTGGCCCCTCCACCACCACG----CACACCAGT----CTCTCACACACCACCCAGGC----AGTGCACCCACTGCTCCAGAACACATGCTCTGCCCCCTCTGGCTTCCCTCCTGGCTCCCTCTTCTCTGACCACCATGTCTTCCGATCCACTGGCCCAGGGCCACCCCTAGCCTCAG------------GGAGTATGGGATCACAAGGCCCATGCAACAG-CACCAGGCCT----------GATGGA-GAAAGGCAGGAGAACACTGCTTGAACT-GGAGGGCGAAGCTAAAAGGGAT----GGCTGGAGGGAGCGCT-GGAGGCCCCTCTTGGTGGTCAGAAGGCCCAGGGGTCCTCAGAAGGGACCCT-GGAGAGGCAAGGAGGACAAGC-AGCC-GATGTCAGTGGCCACA--CTTATAAGTCTAAGAGGGGAGCCTCAGCTGGTCG----------GGGGACTGCAGGTCGCGTAGGTGAGG--------------------CTGGGCCCTTCCTGCTGGGGAAAAGCAGAAGAGCAAGAGTCAGTGGCAGGGGCAGAGGGGCAAATGGCTTAGCTGGGTGGATTCTGTGGCCCAGCTGGGGCAGAACTCAGAGAAAGGTGACGTGCCCAGGTCAGCAGACATGGTCGTCCAGTTGGCTGAAAAGCGTAGGTCACCCCTAGG-GCAACA-GCCAAAGTCCAGGAGCCTGCTGGCTGGT-GGTGGTGC-TTCACT
i dasNov3.JH564958          C 0 C 0
e saiBol1.JH378108           50457440   1 +  54856640 I

a score=4335609.000000
s hg38.chr15_KI270850v1_alt    321632 480 +    430880 GGGGGCCAGGGACCCTGCCTTCGGTCACACACTAGCAGCTGTGATGGTATCTGGGAGGGAGAGATGGGGTCTGTGTGTCCCTGCCTGGCCTGTGAAGTGTGTTGTGGGATGACC----GTGTGTATAGGACTCTC-----------------------------AGGCTTTTA---------------------------TCCTAGATCACCACTGG---ATTGCT-GACA-G-ATAGAGGAAGTGGGACCCTGACTATCACCCCTAATCTGGAGTGGATTTGGCTCTCGG--------CACTCCCAGGCTGGGAGCTGGATA-C-CTGCCCTG-CAGCATGACTCAGACTGCACGACAGGTACGGCG-TGCCCAGGATGATGTTCCCAGGCCTCTGGCTGCCTCAGAATCCAGC----CCAACACAC-ACCCCCCTCCAAGCTCCCAGCCCCCACACCATAAACCACAAGCTCTCTGCCCTCTCTGATGGCTCCAGAGAGCACCCACATCTGCCAGCTTGGGCATGGAGCCCGTTCCAAGACT-C----CCCAGGCTCAGTCATGGA
s panTro5.chr15              63475032 481 +  83230942 GGGGGCCAGGGACCCTGCCTTCGGTCACACACTAGCAGCTGTGATGGTATCTGGGAGGGAGAGATGGGGTCTGTGTGTCCCTGCCTGGCCTGTGAAGTGTGTTGTGGGATGACC----GTGTGTATTGGACTCTC-----------------------------AGGCTTTTA---------------------------TCCTAGATCACCACTGG---ATTGCT-GACA-G-ATAGAGGACGTGGGACCCTGACTATCACCCCTAATCTGCAGTGGATTTGGCTCTCGG--------CACTCCCAGGCTGGGAGCTGGATA-C-CTGCCCTGGCAGCATGACTCAGACTGCACGACAGGTACGGCG-TGCCCAGGATGATGTGCCCAGGCCTCTGGCTGCCTCAGAATCCAGG----CCAACACAC-ACCCCCCTCCAAGCTCCAAGCCCCTACACCATAAACCACAAGCTCTCTGCCCTCTCTGATGGCTCCAGAGAGCACCCACATCTGCCAGCTTCGGCATGGAGCCCATTCCAAGACT-C----CCCAGGCTCAGTCATGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80432441 481 +  99763055 GGGGGCCAGGGACCCTGCCTTCGGTCACACACTAGCAGCTGTGATGGTATCTGGGAGGGAGAGATGGGGTCTGTGTGTCCCTGCCTGGCCTGTGAAGTGTGTTGTGGGATGACC----GTGTGTATTGGACTCTC-----------------------------AGGCTTTTA---------------------------TCCTAGATCACCACTGG---ATTGCT-GACA-G-ATAGAGGACGTGGGACCCTGACTATCACCCCTAATCTGCAGTGGATTTGGCTCTCGG--------CACTCCCAGGCTGGGAGCTGGATA-C-CTGCCCTGGCAGCATGACTCAGACTGCACAACAGGTACGGCG-TGCCCAGGATGATGTGCCCAGGCCTCTGGCTGCCTCAGAATCCAGG----CCAACACAC-ACCCCCCTCCAAGCTCCAAGCCCCTACACCATAAACCACAAGCTCTCTGCCCTCTCTGATGGCTCCAGAGAGCACCCACATCTGCCATCTTCGGCATGGAGCCCATTCCAAGACT-C----CCCAGGCTCAGTCATGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        32327 480 -   1709092 GGGGGCCAGGGACCCTGCCTTCGGTCACACACTAGCAGCTGTGATGGTACCT-GGAGGGAGGGAAGGGGTCTGTGTGTCCCTGCCTGGCCTATGAAGTGTGTTGTGGGATGACC----GCGTGTATAGGACTCTT-----------------------------AGGCTTTTA---------------------------TCCTAGATCACCACTGG---ATTGCT-GACA-G-ATAGAGGAGGTGGGACCCTGACTATCACCCCTAATCTGCAGTGGATTTGGCTCTCGG--------CACTCCCAGGCTGGGAGCTGGATA-C-CTGCCCTGGCAGCATGACTCAGACTGCACGACAGGTACGGCG-TGCCCAGGATGATGTTCCCAGGCCTCTGGCTGCCTCAGAATCCAGC----CCAACACACAAACCCCCTCCAAGCTCCCAGCCCC-ACACCATAAACCACAAGCTCTCTGCCCTCTCTGATGGCTCCAGAGAGCACCCACATCTGCCAGCTTGGGCATGGAGCCCGTTCCAAGACT-C----CCCAGGCTCAGTCATGGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17183819 473 - 121039945 AGGGGCCAGGGACCCTGCCTTTGGTCACACACTGGCAGCTATGACGGTATC--AGAGAGAGGGATGGGGGCTGTGTGTCCCTGCCTGGCCTGTGAAGTGTGTCGTGGGATGACT----GTGCGTATAGGACTCTC-----------------------------AGGCTTTTA---------------------------TCCTAGATCACCACTGG---ATCGCC-AACA-A-ATAGAGGAGGTGGGACCCTGAGTATCA-CCCTAATCT------GATTTGGCTCTCAG--------CACTCCCAGGCTGGGAGCTGGATACC-CTGCCCTGGCAGCATGACTCAGACTGCACGACAGGTATGGCA-TGCCCAGGATGATGTTCCTAGGCCTCTGGCTGCCTCAGAATCCAGC----CCCACACAC-AACCCCCTCTAAGCTCCCAGCCCCTACACCATAAACCACGAGCTCTCTGCCCTCTCTGATGGCTCCAGAGACCATTCATGTCTGCCAGCTTGGGCATGGAGCCCGTTCCAAGAGC-C----CCCAGGCTCAGTCATGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60872984 470 + 169600520 GGGGGCCAGGGACCCTGCCTTCAGTC-CACACGAGCAGCTATGATGGTACCTGGGAGGGAGGGAAGGGGGCTTTGTGTCCCTGCCCGGTCTGTGAAGTGTGTTGTGGGATGACC----GTGTGCATGGGAGTCTC-----------------------------AAGGTTTTA---------------------------TCCTAGATCACCACTGG---ATTGC--AACA-A-ATAGAGGAGGTGGGACCCCGACTATCACCACCGCTCTGCAGTGGATTTGGCTCTCAG--------CACTCCCAGGCTGGGAGCTGGATA-C-CTGCCCTGGCAGCATGACTCAGACTGCATGACAGGTACAGCG-TGCCCAGGATGATGTTCCTAGACCTCTGGCCGCCTCAGAATCCAGC----CCCACACAC-GACCCCCTCCAAGCTCC---------CACCATAAACCGCAAGCTCTCTGCCGTCTCTGACAGATCCAGAGAGCACCCATGTCTGCCAGCCTGGGCATGGAGCCCGTTCCAAGAGC-C----CCCAGGCTCAGTCAGGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108399699 470 - 171882078 GGGGGCCAGGGACCCTGTCTTCAGTC-CACACGAGCAGCTATGATGGTACCTGGGAGGGAGGGAAGGGGGCTTTGTGTCCCTGCCCGGTCTGTGAAGTGTGTTGTGGGATGACT----GTGTGCATGGGAGTCTC-----------------------------AAGGTTTTA---------------------------TCCTCGATCACCACTGG---ATTGC--AACA-A-ATAGAGGAGGTGGGACCCCGACTATCACCACCGCTCTGCAGTGGATTTGGCTCTCAG--------CACTCCCAGGCTGGGAGCTGGATA-C-CTGCCCTGGCAGCATGACTCAGACTGCATGACAGGTACAGCG-TGCCCAGGATGATGTGCCTAGACCTCTGGCCGCCTCAGAATCCAGC----CCCACACAC-GACCCCCTCCAAGCTCC---------CACCGTAAACCGCAAGCTCTCTGCCGTCTCTGACAGCTCCAGAGAGCACCCACGTCTGCCAGCCTGGGCACGGAGCCCGTTCCAAGAGC-C----CCCAGGCTCAGTCAGGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        10157 470 -   2311642 AGGGGCCAGAGACCCTGCCTTCAGTC-CACACGAGCAGCTATGATGGTACCTGGGAGGGAGGGAAGGGGGCTTTGTGTCCCTGCCCGGTCTGTGAAGTGTGTTGTGGGATGACC----GTGTGCATGGGAGTCTC-----------------------------AAGGTTTTA---------------------------TCCTAGATCACCACTGG---ATTGC--AACA-A-ATAGAGGAGGTGGGACCCCGACTATCACCACCGCTCTGCAGTGGATTTGGCTCTCAG--------CACTCCCAGGCTGGGAGCTGGATA-C-CTGCCCTGGCAGCATGACTCAGACTGCATGACAGGTACAGCG-TGCCCAGGATGATGTTCCTAGACCTCTGGCCGCCTCAGAATCCAGC----CCCACACAC-GACCCCCTCCAAGCTCC---------CACCATAAACCGCAAGCTCTCTGCCGTCTCTGACAGCTCCAGAGAGCACCCACGTCTGCCAGCCTGGGCATGGAGCCCGTTCCAAGAGC-C----CCCAGGCTCAGTCAGGGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         8370 471 -   1987038 AGGGGCCAGGGACCCTGCTTTCGGTCACACACTAGCAGCTGTGATGGTATCTGGGAGGGAGGGAAGGGGGCTTTGTGTCCCTGCCTGGCCTGTGAAGTGTGTTATGGGATGACC----GTGTGCATGGGAGTCTC-----------------------------AAGGTTTTA---------------------------TCCTAGATCACCACTGG---ATTGC--AACA-A-ATAGAGGAGGTGGGACCCCGACTATCACCACCGCTCTGCAGTGGATTTGGCTCTCAG--------CACTCCCAGGCTGGGAGCTGGATA-C-CTGCCCTGGCAGCATGACCCAGACTGCATGACAGGTACAGCG-TGCCCAGGATGATGTTCCTAGACCTCTGGCCGCCTCAGAATCCAGC----CCCACACAT-GACCCCCTCCAAGCTCC---------CACCATAAACCGCAAGCTCTCTGCCGTCTCTGACAGCTCCAGAGAGCACCCATGTCTGCCAGCCTGGGCATGGAGCCCGTTCCAAGAGC-C----CCCAGGCTCAGTCAGGGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21088897 472 -  24206276 AGGGGCCAGGGACCCTGCTTTCGGTCACACACTAGCAGCTATGATAGTACCTGGGAGGGAGGGAAGGGGGCTTTGTGTCCCTGCCTGGCCTGTGAAGTGTGTTGTGGGATGACC----GTGTGCATGGGAGTCTC-----------------------------AAGGTTTTA---------------------------TCCTAGATCACCACTGG---ATTGC--AACA-A-ATAGAGGAGGTGGGACCCCGACTATCACCACCGCTCTGCAGTGGATTTGGCTCTCGG--------CACTCGCAGGCTGGGAGCTGGATA-CTCTGCCCTGGCAGCATGACTCAGACTGCATGACAGGTACGGCA-TGCCCAGGATGATGTTCCTAGACCTCTGGCCGCCTCAGAATCCAGC----CCCACACAC-GACCCCCTCCAAGCTCC---------CACCATAAACCGCGAGCTCTCTGCCGTCTCTGACAGCTCCAGAGAGCACCCACGTCTGCCAGCCTGGGCATGGAGCCCATTCCAAGAGC-C----CCCAGGCTCAGTCAGGGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         4085 472 -   1397330 GGGGGCCAGGGACCCTGCTTTCGGTCACACACTAGCAGCTATGATGGTACCTGGGAGGGAGGGAAGGGGGCTTTGTGTCCCTGCCTGGCCTGTGAAGTGTGTTGTGGGATGACC----ATGTGCATGGGAGTCTC-----------------------------AAGGTTTTA---------------------------TCCTAGATCACCACTGG---ATTGC--AACA-A-ATAGAGGAGGTGGGACCCCGACTATCACCACCGCTCTGCAGTGGATTTGGCTCTCAG--------CACTCCCAGGCTGGGAGCTGGATA-CTCTGCCCTGGCAGCATGACTCAGACTGCATGACAGGCACAGCG-TGCCCAGGATGATGTTCCTAGACCTCTGGCCGCCTCAGAATCCAGC----CCCACACAC-GACCCCCTCCAAGCTCC---------CACCATAAACCGCAAGCTCTCTGCCGTCTCTGACAGCTCCAGAGAGCACCCATGTCTGCCAGCCTGGGCATGGAGCCCGTTCCAAGAGC-C----CCCAGGCTCAGTCAGGGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        27772 472 -   1784207 GGGGGCCAGGGACCCTGCTTTCGGTCACACACTAGCAGCTATGATGGTACCTGGGAGGGAGGGAAGGGGGCTGTGTGTCCCTGCCTGGCCTGTGAAGTGTGTTGTGGGATGACC----GTGTGCATGGGAGTCTC-----------------------------AAGGTTTTA---------------------------TCCTAGATCACCACTGG---ATTGC--AACA-A-ATAGAGGAGGTGGGACCCCGACTATCACCACTGCTCTGCAGTGGATTTGGCTCTTGG--------CACTCCCAGGCTGGGAGCTGGATA-CTCTGCCCTGGCAGCATGACTCAGACTGCATGACAGGTACGGCG-TGCTCATGATGATGTTCCTAGACCTCTGGCCACCTCAGAATCCAGC----CCCACACAC-GACCCCCTCCAAGCTCC---------CACCATAAACCGCGAGCTCTCTGCTGTCCCTGACGGCTCCAGAGAGCACCCACGTCTGCCGGCCTGGGCATGGAGCCCGTTCCAAGAGC-C----CCCAGGCTCAGTCAGGGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114310161 429 - 132174527 GGGGGCCAGGGACCCTGCCTTCAGTCACATGACAGCATCTACGAGGG-ACCTGGGAGGGAGGGGAGGGGGCCGTGTGT-CCTGCCTGACCTGTGAGGTGTGTGGTGGGATGATC----ATGTGTATGGGACTCTC-----------------------------AAGCTTTTA---------------------------CCT-AGATCACCACTTG---ATTGCC-GACA-G-ACAAAGGAGGTGAGACC----CTATCACCCTGGCTCTGCAGTGGA-TTGGCTCTCTG--------CACTCCCAGGCTGGGAGCTGGATG-CCCTGC-CTGTCAGCATGACTCACACTGCAGGACAGACACAGCG-GGCCCAGGATGACGTTCCTAGGCCTCTGG----CTCCGAGTCCAGC----CCTACACAC-AA-CCCCTCCAAGCTCGCAG-CCCTACACCATAA------------------------------------AGGACCCAC-TGTGTCAGCTTGGGCATAGAGCCTGTTCCATGAGC------CCCAGGCTCAGCCATGGA
i calJac3.chr10             I 8 C 0
s saiBol1.JH378108           50457441 468 +  54856640 GGGGGCCAGGGA-TCTGCATTCAGTCACACACTGGCAGCCATGATGGCACCTGGGAGGGAGGGAAGGAAGCCGTGTGT-CCTGCCTGGCCTGTGAGGTGTGTGGTGGGATGACT----GTGTGTATGGGACTCTC-----------------------------CAGCTTTTA---------------------------CCCGAGATCACCACTGGATTATTACC-AGCA-G-ATAGAGGAGGTGGGACCCTGACTAGCACCC--GCTCTGCAGTAGATTTGGCTCTCGG--------CACTCCAAGGCCGGGAGCTGGATG-CCCTGCACTGGCAGCATGACTCAGAATGCACGACAGGCACAGCG-TGCCCAGGAGGACGTTCCTGGGCCACTGGCTGCCTCAGAGTCCAGC-----------------CCCCTCCAAGCTCCTGGACCCCACACCATAAACCACGAGCTCTCTGCCCACTGTGGTGGCTCCGGAGAGCACCCACATCTGCCAGCTTGAGCACAGAGCCTGTTCCAAGAGC------CCCAGGCTCAGTCACGGA
i saiBol1.JH378108          I 1 C 0
s cebCap1.NW_016107979v1      1016294 481 +   1024465 GGTGGCCAGGGACCCTGCCTTCAGTCACATGACGGCATCTATGAGGT-ACCTGGGAGGGAGGGGAGGGGACTGGGTGT-CCTTCCTGGCCTGTGAGGCGTGTGGTGGGATGACC----GTGTGTATGGGACTCTC-----------------------------GCGCTTTTA---------------------------CCCCAGATCGCCACTGG---ATTGCC-GACA-G-----AGGAGGTGAGACCCTGACTGTCACCCCTCCTCTGCAGTGCATTTGGCTCTTGG--------CACTCCCAGGCTGGGAACCGGATG-CCCTGG-CCGGCAGCATGACTCACACTGCAGGACAGGCATGGCG-GGCCCAGGATGACGTTCCTAGGCCTCTGGCTGCCTCAGAGTCCAGCCACGCACACACAC-AA-ACCCCTCAAGTTGCCAG-CCCCTAGCCATACACCATGAGCTCTCTGCCCTCTCTGACAGCTCCAGAGAGCACCCACGTCTGCCAGCTTGGGCACGGAGCCTGTTCCAAGAGC-CCCCACCCAGGCTCAGCCATCAA
i cebCap1.NW_016107979v1    I 8 C 0
s otoGar3.GL873533             438546 450 -  31380117 TGGGGCCAAAGACACCATCTTCAGTCACACATGAGTATATGTGAC---ACTGATGAGGTAGGGAAGGGGG---TGTGTCCCTGTCTCGCCTGTGAGCTGTTGCATGAGCTGACA----GTGTGAACAGGACTATCCTTCCAGGCTTTCAGAAATTCTC-AACCAGAGCCTCTG---------------------------CCCCCGATCACTGCTCG---ATGGCCAGGCT-G-ATTGAGGGGGCAGGACCCTGACCACGTCCCCTGCTCTAC---------------CAG--------ATCACCCAGGTCCAGAGCTGTGTC-C-CTGCCCTAGCAGCATGGCTCAGACTGGGCAACCAGTGCAACA-TGCCTGAG-------TTCAAGGTCTCTGGTCACTTCTGAGTCCTGC----CT----CAT-----------------------------CCATAAACCACAAGTTCCCCATCCTCTCTGACAGCTCTAGAGAGCACCTATGTCTGGCAGCTTGGGTGCGGAGCCTGTCCCAAGAGC-C----CCTTGGCTCAGCCATGGA
i otoGar3.GL873533          C 0 I 3520
s canFam3.chr9               55253813 482 +  61074082 TGGGGCAGAGGACACTGTCGTTTGTAGTGCCATCACAAGCATGACCATACC-AGGAGGGAGAGGAACAGGCTGCGTGATCCTACCTCGCCCGT------------------ACA----CTGTGGACAGGGCCCTC-----CAGCTTTCAGAAATCAGCAAACCAGAGCCTTCG---------------------------CCCCAAATTGCTGCTCA---ACTGCT-GGCA-CCATAGAGGAGGTGGGGCTGTGAC---CTCCTCTGCCCTATCATGGCCTCGGTTCCCAG--------CGCTCCTGAGCTGGGAGCTGGCTG-CCCTGCCCCGACAGCTTGGCTCAGGTTGGACAATGAGTGTGGCACCCCCCAGGACAAAGTTCCAAG---CCTGGCTGGCT--GAGTTCAGC----CCCACGCAC-AACCCCCTCCAAGGTTCCTGCCTCTACACCATAAACCATGAGCCCTCTGTCCTCTCTGATGGCTCCAGAGAGCACCTGTGTCTGCCAGCTCGGGCGCGGAGCCTGTCCCAAGAGCTC----CCCAGGCTCAGCCATGGA
i canFam3.chr9              C 0 I 2972
s dasNov3.JH564958             187263 508 +    584178 GGGGGCTGAGGACGCTGCCTTCAGTCACACACCCCCAGGT-TGACAATAACAAGGAAATAGGGGAAGGGGCGGTCTGTCCAG---------GTGAGGCGTGTTATGGGCCGATCGATGGTGTGCACAGAACCCTT-----------------------------AGGCTTTCAGAAATCATCAACCAACCAGTGCCGTCCCCTCAGATAACTGTTGG----TTGCT-GGCATG-ATAGCGGAGGAGGGACTCTGACTG---CTCCTGCCCTACAGTGGATTTGGCTCCCAGGCCTCCCAGGCTCCCAGGCTGGGAGAAGGATG-TCCTGC-CCGGCAGCATGGTGTGGATTAGGGGATGGGTGTGGCA-CCCCCAAGATGAACTTCAAAGGCCTGTGGCCTCCTCAGAGTCAAGC----CCCACACAC-AACCTCCTCCAAGCTCCTAGCCTCTGCATCATACACCATGAGCTCACTGTCCTCTCTGATGGCTCCAGAGAGCACCCATGTCTACCAGTTTGGGCATGGAGCCTGTCCCAAGAGCCC----CCCAGGCTTAGCCAGGGA
i dasNov3.JH564958          C 0 I 2794

a score=43673.000000
s hg38.chr15_KI270850v1_alt    322112 3 +    430880 GGC
s panTro5.chr15              63475513 3 +  83230942 GGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80432922 3 +  99763055 GGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        32807 3 -   1709092 GGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17184292 3 - 121039945 GGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60873454 3 + 169600520 GGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108400169 3 - 171882078 GGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        10627 3 -   2311642 GGC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         8841 3 -   1987038 GGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21089369 3 -  24206276 GGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         4557 3 -   1397330 GGC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        28244 3 -   1784207 GGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114310590 3 - 132174527 GGC
i calJac3.chr10             C 0 C 0
s saiBol1.JH378108           50457909 3 +  54856640 GGC
i saiBol1.JH378108          C 0 I 5050
s cebCap1.NW_016107979v1      1016775 3 +   1024465 GGC
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             442516 3 -  31380117 GGC
i otoGar3.GL873533          I 3520 C 0
s canFam3.chr9               55257267 3 +  61074082 GGT
i canFam3.chr9              I 2972 C 0
s dasNov3.JH564958             190565 3 +    584178 GGC
i dasNov3.JH564958          I 2794 C 0

a score=56527.000000
s hg38.chr15_KI270850v1_alt    322115  9 +    430880 T-GGGGGACT
s panTro5.chr15              63475516  9 +  83230942 T-GGGGGACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80432925  9 +  99763055 T-GGGGGACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        32810  9 -   1709092 T-GGGGGACT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17184295  8 - 121039945 T--GGGGACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60873457 10 + 169600520 TGGGGGGGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108400172 10 - 171882078 TGGGGGGGCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        10630 10 -   2311642 TGGGGGGGCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         8844 10 -   1987038 TGGGGGGGCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21089372 10 -  24206276 TGGGGGGGCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         4560 10 -   1397330 TGGGGGGGCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        28247 10 -   1784207 TGGGAGGGCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr10             114310593  9 - 132174527 -CTTGGGGCT
i calJac3.chr10             C 0 N 0
s cebCap1.NW_016107979v1      1016778  8 +   1024465 --TGGGGGCT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             442519  9 -  31380117 -TGGGGGGCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55257270  9 +  61074082 -TGGGGGGCT
i canFam3.chr9              C 0 C 0
s dasNov3.JH564958             190568  9 +    584178 -TGCAGGGCT
i dasNov3.JH564958          C 0 C 0
e saiBol1.JH378108           50457912 5050 +  54856640 I

a score=4546559.000000
s hg38.chr15_KI270850v1_alt    322124 539 +    430880 TTGGGACCGT-GGGGGCCGGCCCTGGTACCTGCGTCCAGCCAGGATGCTCTGCACCTGCAGCCAAGAGTCATCCACGGGC--CCCCATGGGCatgc------------------------------tgatggtgatcatgttgatgtcgctgatgctgctgAGCACCTCTGTCAGCATATGGTGCATGCACAGCATCTCATCGCCCCGCTGTACCTGCTCTGCAGACTCCTCCATCAGCGTGTTCTGGTCCCCATGCGAGTACAGGTTGGATAGCAGCTCCAAGAAGATGAATTCCTTGGTCTGAGAGTGGGCAAAGAGGCAAGGAGGGTGCAACCTGATGcctgtgctgccctggctgccctgccgggccctgcTAGGACTGTGCGCTGGGCTTGGAGCCC--CAAGTACGGCTTTTCAGGCGCAGC-TTCTACACCACTTAAGACTCGAAGATCTGCCTCcc-----------cac-cgccttttctca---ctcagatggggacactgaggtcc--aga--ggaaaagtcacctgtccaaggttacagatctggaaggggacccaggacCTATCATGCCACCAGGACACCT
s panTro5.chr15              63475525 539 +  83230942 TTGGGACCGT-GGGAGCCGGCCCTGGTATCTGCGTCCAGCCAGGATGCTCTGCACCTGCAGGCAAGAGTCATCCACGGGC--CCCCATGGGCatgc------------------------------tgatggtgatcatgttgatgtcgctgatgctgctgAGCACCTCTGTCAGCATGTGGTGCATGCACAGCATCTCATCGCCCCGCTGTACCTGCTCTGCAGACTCCTCCATCAGCGTGTTCTGGTCCCCATGCGAGTACAGGTTGGATAGCAGCTCCGAGATGATGAATTCCTTGGTCTGAGAGTGGGCAAAGAGGGAAGGAGGGTGCAACCTGATGcctgtgctgccctggctgccctgccgggccctgcTAGGACTGTGCGCTGGGCTTGGAGCCC--CAAGTACGGCTTTTCAGGCACAGC-TTCTACACCACTTAAGACTCGAAGATCTGCCTCcc-----------cac-cgccttttctca---ctcagatggggacactgaggtcg--aga--ggaaaagtcacctgtccaaggttacagatctggaaggggacccaggacCTATCATGCCACCAGGACACCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80432934 539 +  99763055 TTGGGACCGT-GGGAGCCGGCCCTGGTATCTGCGTCCAGCCAGGATGCTCTGCACCTGCAGGCAAGAGTCATCCACGGGC--CCCCATGGGCatgc------------------------------tgatggtgatcatgttgatgtcgctgatgctgctgAGCACCTCTGTCAGCATGTGGTGCATGCACAGCATCTCATCGCCCCACTGTACCTGCTCTGCAGACTCCTCCATCAGCGTGTTCTGGTCCCCATGCGAGTACAGGTTGGATAGCAGCTCCGAGATGATGAATTCCTTGGTCTGAGAGTGGGCAAAGAGGGAAGGAGGGTGCAACCTGATGcctgtgctgccctggctgccctgccgggccctgcTAGGACTGTGCGCTGGGCTTGGAGCCC--CAAGTACGGCTTTTCAGGCACAGC-TTCTACACCACTTAAGACTCGAAGATCTGCCTCcc-----------cac-cgccttttctca---ctcagatggggacactgaggtcc--aga--ggaaaagtcacctgtccaaggttacagatctggaaggggacccaggacCTATCATGCCACCAGGACACCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        32819 535 -   1709092 TT-GGACCGT-GGGGGCCGGCCCTGGTACCTGCGTCCAGCCAGGATGCTCTGCACCTGCAGCCAGGAGTCATCCACGGGC--CTCCATGGGCatgc------------------------------tgatggtgatcatgttgatgtcgctgatgctgctgAGCACCTCTGTCAGCATGTGGTGCATGCACAGCATCTCATCGCCCCGCTGTACCTGCTCTGCAGACTCCTCCATCAGCGTGTTCTGGTCCCCATGCGAGTACAGGTTGGATAGCAGCTCCGAGAAGATGAATTCCTTGGTCTGAGAGTGGGCAAAGAGGGAAGGAGGGTGTAACCTGATGCCTGTGCTGCCCTGGCTGCCCTGC--GGCCCTGCTAGGACTGTGCGCT-GGCTTGGAGCCC--CGAGTATGGCTTTTCAGGCGCAGCTTTCTACACCAC-TAAGACTCGAAGATCTGCCTCcc-----------cac-cgccttttctca---ctcagatggggacactgaggtcc--aga--ggaaaagtcacctgtccaaggttacagatctggaaggggacccaggacCTATCATGCCACCAGGACACCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17184303 534 - 121039945 TTGGGACTGT-GGGGGCCGGCCCTGGTATCTGCATCCAGGCGGGATGCTCTGCACTTGCAGCCAGGAGTCATCCACAGGC--CCCCATGGGCATGC------------------------------TGATGGCGATCGTGTTGATGTCGCTGATGATGCTGAGCACCTCTGTCAGCACGTGGTGCATGCACAGCATCTCATCACCCCGCTGTACCTGCTCTGCAGACT----CATCAGCGTGTTCTGGTCCCCATTCGAGTACAGGTTGGACAGCAGCTCCAAGAAGATGAATTCCTTGGTCTGAGAGTGGGCAAAGAGGGAAGGAGGGTGGAACCTGATGCCTGTGCCGCCCTGGCTGCCCTGCCGGGCCCTGCTGGGACTGTGCGCTGGGCTTGGAGCCC--CGAGTATGGTTTTTCAGATGCAGC-TTCTACATCAC-TTAGACTCTAAGATCTGCCTCCC-----------CAC-TGCCTTTTctca---ctcagatggggacactgaggtcc--aga--ggaaaagtcacgtgtccaaggttacaGATATGGAAGGGGACTCAGGACCTATCATGCCACCGGCACAACT
i nomLeu3.chr6              C 0 I 139
s rheMac8.chr7               60873467 565 + 169600520 TTGGGACCGT-GGGGACCAGCCCTGGTACCTGCGTCTGGCCGGGATGCTCTGCACCTGCAGCCAGGAGTCATCCACAGGC--CCCTgtgggcgtgctgatggtggtcgtgttgatggtggtcgtgttgatggtggtcgtgttgatgTCACCAATGATGCTGAGCACCTCCGTCAGCATGTGGTGCATGCGCAGCATCTCGTCGCCCCACTGTGCCTGCTCTGCTGACTCCTCTATCAGTGTGTTCTGGTCCCCATGTGAGTACAGGTTGGACCGCAGCTCCGA---GATGAATTCCTTGGTCTGAGAGTGGGCAAAGAGGGAAGAAGGGTGGAACCTAATGcctgtgctgccctggccgccctgccgggccctgcTGGGACTGTGCGCTGGGCTTGGAGCCC--TAAGTATGGCTTTTCAGATGTGGC-TTCTATACCAC-TTAGACTCGAAGATCTGCCTCCC-----------CAC-TGCCTTTTctca---ctcagatgggaacactgaggtcc--aga--ggaaaagtcacctgtccaaggttacagatctggaagaggacccaggacCTATCATGCCACCAGGACACCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108400182 565 - 171882078 TTGGGACCGT-GGGGACCAGCCCTGGTACCTGCGTCTGGCCGGGATGCTCCGCACCTGCAGCCAGGAGTCATCCACGGGC--CCCTgtgggcgtgctgatggtggtcgtgttgatggtggtcgtgttgatggtggtcgtgttgatgTCGCCAATGATGCTGAGCACCTCCGTCAGCATGTGGTGCATGCGCAGCATGTCGTCGCCCCACTGTGCCTGCTCTGCTGACTCCTCTATCAGTGTGTTCTGGTCCCCATGTGAGTACAGGTTGGACAGCAGCTCCGA---GATGAATTCCTTGGTCTGAGAGTGGGCAAAGAGGGAAGAAGGGTGGAACCTAATGcctgtgctgccctggccgccctgccgggccctgcTGGGACTGTGCGCTGGGCTTGGAGCCC--TAAGTATGGCTTTTCAGATGTGGC-GTCTACACCAC-TTAGACTCGAAGATCTGCCTCcc-----------cac-tgccttttctca---ctcagatgggaacactgaggtcc--aga--ggaaaagtcacctgtccaaggttacagatctggaagaggacccaggacCTATCATGCCACCAGGACACCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        10640 549 -   2311642 TTGGGACCGT-GGGGACCAGCCCTGGTACCTGCGTCTGGCCGGGATGCTCTGCACCTGCAGCCAGGAGTCATCCACGGGC--CCCTgtgggcgtgc---------------tgatggtggtcgtgttgatggtggtcgtgttgatgTCGCCAATGATGCTGAGCACCTCCGTCAGCATGTGGTGCATGCGCAGCATCTCGTCGCCCCACTGTGCCTGCTCTGCTGACTCCTCTATCAGTGTGTTCTGGTCCCCATGTGAGTACAGGTTGGACAGCAGCTCTGA---GATGAATTCCTTGGTCTGAGAGTGGGCAAAGAGGGAAGAAGGGTGGAACCTAATGCCTGTGCTG-TCTGGCCGCCCTGCCGGGCCCTGCTGGGACTGTGCACTGGGCTTGGAGCCC--TAAGTATGGCTTTTCAGATGTGGC-TTCTACACCAC-TTAGACTCGAAGATCTGCCTCCC-----------CAC-TGCCTTTTctca---ctcagatgggaacactgaggtcc--aga--ggaaaagtcacctgtccaaggttacagatctggaagaggacccaggacCTATCATGCCACCAGGACACCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         8854 550 -   1987038 TTGGGACCGT-GGGGACCAGCCCTGGTACCTGCGTCTGGCCAGGATGCTCTGCACCTGCAGCCAGGAGTCATCCACGGGC--CCCTgtgggcgtgc---------------tgacggtggtcgtgttgatggtggtcgtgttgatgTCGCCAATGATGCTGAGCACCTCCGTCAGCATGTGGTGCATGCGCAGCATCTTGTCGCCCCACTGTGCCTGCTCTGCTGACTCCTCTATCAGTGTGTTCTGGTCTCCATGTGAGTACAGGTTGGACAGCAGCTCCGA---GATGAATTCCTTGGTCTGAGAGTGGGCAAAGAGGGAAGAAGGGTGGAACCTAATGcctgtgctgccctggccgccctgccgggccctgcTGGGACTGTGCGCTGGGCTTGGAGCCC--TAAGTATGGCTTTTCAGATGTGGC-TTCTACACCAC-TTAGACTCGAAGATCTGCCTCCC-----------CAC-TGCCTTTTctca---ctcagatgggaacactgaggtcc--aga--ggaaaagtcacctgtccaaggttacagatctggaagaggacccaggacCTATCATGCCACCAGGACACCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21089382 550 -  24206276 TTGGGACCGT-GGGGACCAGCCCTGGTACCTGCATCTGGCCGGGATGCTCTGCACCTGCAGCCAGGAGTCATCCACGGGC--CCCCCTGGGCGTGC---------------TGACAGTGGTCGTGTTGACGGTGGTCGTGTTGATGTCGCCAATGATGCTGAGCACCTCCGTCAGCATGTGGTGCATGTGCAGCATCTTGTCGCCCCACTGTGCCTGCTCTGCTGACTCCTCTATCAGTGTGTTCCGGTCCCCATGTGAGTACAGGTTGGACAGCAGCTCTGA---GATGAATTCCTTGGTCTGAGAATGGGCAAAGAGGGAAGAAGGGTGGAACCTAATGcctgtgctgccctggctgccctgccgggccctgcTGGGACTGTACGCTGGGCTTGGAGCCC--CAAGTATGGCTTTTCAGATGTGGC-TTCTACACCAC-TTAGACTCGAAGATCTGCCTCCC-----------CAC-TGCCTTTTCTCA---CTcagatgggaacactgaggtcc--aga--ggaaaagtcacctgtccaaggttacagatctagaagaggacccaggacCTATCATGCCACCAGGACACCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         4570 550 -   1397330 TTGGGACCGT-GGGGACCAGCCCTGGTACCTGCGTCTGGCCAGGATGCTCTGCACCTGCAGCCAGGAGTCATCCACGGGC--CCCTgtgggcgtgc---------------tgacggtggtcgtgttgatggtggtcgtgttgatgTCGCCAATGATGCTGAGCACCTCCGTCAGCATGTGGTGCATGCGCAGCATCTCGTCGCCCCACTGTGCCTGCTCTGCTGACTCCTCTATCAGTGTGTTCTGGTCTCCATGTGAGTACAGGTTGGACAGCAGCTCCGA---GATGAATTCCTTGGTCTGAGAGTGGGCAAAGAGGGAAGAAGGGTGGAACCTAATGcctgtgctgccctggccgccctgccgggccctgcTGGGACTGTGCGCTGGGCTTGGAGCCC--TAAGTATGGCTTTTCAGATGTGGC-TTCTACACCAC-TTAGACTCGAAGATCTGCCTCCC-----------CAC-TGCCTTTTctca---ctcagatgggaacactgaggtcc--aga--ggaaaagtcacctgttcaaggttacagatctggaagaggacccaggacCTATCATGCCACCAGGACACCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        28257 523 -   1784207 TTGGGACCGT-GGGGACCAGCCCTGGTACCTGCGTCTGGCCAGGATGCTCTGCACCTGCAGCCAGGAGTCATCCACGGGC--CCCCGTGGGCGTGC------------------------------TGACGGTGGTCGTGTTGATGTCACCAATGATGCTG------------AGCATGTGGTGCATGCGCAGCATCTCGTCGCCCCACTGTGCCTGCTCTGCTGACTCCTCCATCAGTGTGTTCTGGTCCCCATGTGAGTACAGGTTGGACAGCAGCTCCGA---GATGAGTTCCTTGGTCTGAGAGTGGGCAAAGAGGGAAGAAGGGTGGAACCTAATGcctgtgctgccctggccgccctgccgggccctgcTGGGACTGTGCGCTGGGCTTGGAGCCC--CAAGTATGGCTTTTCAGATGTGGC-TTCTACACCAC-TTAGACTCGAAGATCTGCCTCCC-----------CAC-TGCCTTTTctca---ctcagataggaacactgaggtcc--aga--ggaaaagtcacctgtccaaggttacagatctggaaggggacccaggacCTATCATGCCACCGGGACACCT
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1016786 525 +   1024465 TTAAGGCCGT-GGGGACCGGCCCTGGTACCTGCCTCCAGCTGGGACGTTCTGCACCTGCAGCCAGGAGTCATCCCTGGGC--CCCCGTGGGCGTGC------------------------------TGACGGTGGTGGTGTTGATGTGGCTGATGAGGCCGAGCGGCTCCCTCAGCACGTGGTGCACGCGCTGCATCTCAAATCGCCGCTGTGCCTGCCCTGCCATCTCCTCCGGCAGC-TTTTCTGGCCCTCAGGCAAGTACAGGTTGGCCAGCAGCTCCGAGAAGATGAACTCCTTGGTCTGAGAGTGGGCAAAGAGGGAAGGAGGTTGGGACCTGATG----------CCTGGCCGCCCCGCTGGGACCTGTTGGGGCTGTGTGCTGGACTTGGAGCTC--CAGGTATGGC-TTTCAGACGCGGC-TTCTCCACTGC-TTAGActcaaagatctgcct-ct-----------cac-tgccttttctca---ctcagatggggtcagtggggccc--aga--ggaaaagtcatctgaccaaggctatagatctggcaggggacctaggaccTGTCATGCCACCAGGACACCT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             442528 541 -  31380117 TTGGGGCCGT-GGGGACCGGCCCTGGTACCTGCGTCCGGCCGGTACGCTCTGCACCTGCAGCCAGGAGTCGTCCACAGGCGGGGGCATGGGCGTGC------------------------------TGACGGTGGTCGTGTTGATGTCGCCGATGATGCCGAGCGCCTCCTTCAGAGCGTGGTACATGCGCAGCATCTCGTCGCGCCGCTGTGCCTGCTCAGCTGACTCTTCCATCAGTGTGTTCTGGTCCCCGCACGAGTACAGGTTGGCCAGCAGCTCAGAGAAGATGAAATCCTTGGTCTGAGGGCGGGTGAAGAAGAAAAGGGGCTGGGACTTGGGGCCTGTGATACCCTCTCCGCCCCGCTAGGCCCTGCTGGGACCGTGCGC-GGGAAGGGAGCAT--GAGATTTGGAGTTTCAGACATGGC-TCCGTAACCAC-CTAAACTTGGAGATCTCCCGCCCCTCCACACACACAC-TAccctttt------ctcagttggggacactgagatctagaga--ggaaaagtcacct----AAGAT----GACCCTAGAGGAGACTCAGGACCCGTCATGCCACCAGGACGTCT
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55257279 509 +  61074082 TTGGGGCCGT-GGGGGCCGGCCCTGGTACCTGCGTCCGGCCGGTACGCTCTGCACCTGCAGCCAGGAGTCGTCCACGGGCGGGGGCATGGGCGTGC------------------------------TGACGGTGGTCGTGTTGATATCGCCGATGATGCTGAGCGCCTCCTTCAGTGCGTGGTACATGCGCAGCATCTCGTCGCGCCGTTGCGCCTGCTCCGCCGACTCCTCCATCAGTGTGTTCTGGTCCCCGCACGAGTACAGGTTGGCGAGCAGCTCCGAGAAGATGAATTCCTTCGTCTGCGGGCGCGCCAAGAGAGGAGG-GGCTAGGACCTGACGCCTGTGCCAGTCTGGCCGCCTTGG-----------GGGACCGTGCGCTGGACTGGGAGCTCGGTGGTCCTGGCTTTGCCACTCAGAG-ATCTCCCCCGC-TT----------TCCCGTCTCCA-----------TGCTTGCCCTTTT------CTCAGAT-----------ggtcc--agaggggaaaactgacctgtccaaggtcataGATACGGGAGGGCACTCAGGGCCTACCATGCAACCAGCACACCT
i canFam3.chr9              C 0 I 26
s dasNov3.JH564958             190577 532 +    584178 TTGGGCCCGTGGGGGGCCGGCCCTGGTACCTGCGTCCGGCCGGTACGCTCTGCACCTGCAGCCAGGAGTCGTCCACGGGCGGAGGCATGGGCGTGC------------------------------TGACGGTGGTCGTGTTGATGTCGCCGATGATGCTGAGCGCCTCCTTGAGCGCGTGGTACATGCGCAGCATCTCGTCGCGCCGCTGCGCCTGCTCGGCCGACTCCTCCATCAGGGTGTTCTGGTCCCCGCACGAGTACAAGTTGGCCAGCAGCTCCGAGAAGATGAATTCCTTGGTCTGCGGGCGGGCGAGGAGGGGAGGGGGCTGAGACCCGCCGCTTGGGCCGCCCCTCCTGCCC-GCCGGTCC--GCACGCGCCGAGCACTGGGGCGGGAGCCC--C--GTTCGGCCTTTTACACGCAGC-TCTGCCACAGC-CTAAACCCGgaaat--------------------cac-ttcgctttcccatttcccagatggggatactgaggcccagaga--ggaaaagtgacccgtccaaggttataGATATGGGAGGACCCCTAGAATGTATTATGCCATCTGTAAAACT
i dasNov3.JH564958          C 0 C 0
e saiBol1.JH378108           50457912 5050 +  54856640 I

a score=12000.000000
s hg38.chr15_KI270850v1_alt    322663 1 +    430880 G
s panTro5.chr15              63476064 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80433473 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        33354 1 -   1709092 G
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17184976 1 - 121039945 G
i nomLeu3.chr6              I 139 C 0
s rheMac8.chr7               60874032 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108400747 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        11189 1 -   2311642 G
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         9404 1 -   1987038 G
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21089932 1 -  24206276 G
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         5120 1 -   1397330 G
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        28780 1 -   1784207 G
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1017311 1 +   1024465 G
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             443069 1 -  31380117 G
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55257814 1 +  61074082 g
i canFam3.chr9              I 26 C 0
s dasNov3.JH564958             191109 1 +    584178 G
i dasNov3.JH564958          C 0 I 1682
e saiBol1.JH378108           50457912 5050 +  54856640 I

a score=64376.000000
s hg38.chr15_KI270850v1_alt    322664 14 +    430880 TCTACTT-----------------------------------------------------------------------GGTTTTT-
s panTro5.chr15              63476065 14 +  83230942 TCTACTC-----------------------------------------------------------------------GGTTTTT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80433474 14 +  99763055 TCTACTC-----------------------------------------------------------------------GGTTTTT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        33355 14 -   1709092 TCTACTC-----------------------------------------------------------------------GGTTTTT-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17184977 14 - 121039945 TCTACTC-----------------------------------------------------------------------AGTTTTT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60874033 14 + 169600520 TCTACTT-----------------------------------------------------------------------GGTTTTT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108400748 14 - 171882078 TCTACTT-----------------------------------------------------------------------GGTTTTT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        11190 14 -   2311642 TCTACTT-----------------------------------------------------------------------GGTTTTT-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         9405 14 -   1987038 TCTACTT-----------------------------------------------------------------------GGTTTTT-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21089933 14 -  24206276 TCTACTT-----------------------------------------------------------------------GGTTTTT-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         5121 14 -   1397330 TCTACTT-----------------------------------------------------------------------GGTTTTT-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        28781 14 -   1784207 TCTACTC-----------------------------------------------------------------------GATTTTT-
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1017312 14 +   1024465 GCTACTC-----------------------------------------------------------------------AGTGTTT-
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             443070 14 -  31380117 TCtactc-----------------------------------------------------------------------agcattt-
i otoGar3.GL873533          C 0 I 902
s canFam3.chr9               55257815 86 +  61074082 tttcctcatctgtaaaatgggatagttataaccccttccaaggacttgcacaatccacggggccaaaataaggtagatggcatttt
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958             191110 1682 +    584178 I
e saiBol1.JH378108           50457912 5050 +  54856640 I

a score=37037.000000
s hg38.chr15_KI270850v1_alt    322678 5 +    430880 AAAAA
s panTro5.chr15              63476079 5 +  83230942 AAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80433488 5 +  99763055 AAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        33369 5 -   1709092 AAAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17184991 5 - 121039945 AAAAA
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr7               60874047 5 + 169600520 AAAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108400762 5 - 171882078 AAAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        11204 5 -   2311642 AAAAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         9419 5 -   1987038 AAAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21089947 5 -  24206276 AAAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         5135 5 -   1397330 AAAAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        28795 5 -   1784207 AAAAA
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1017326 5 +   1024465 TAAAG
i cebCap1.NW_016107979v1    C 0 C 0
s canFam3.chr9               55257901 5 +  61074082 aaaaa
i canFam3.chr9              C 0 C 0
e dasNov3.JH564958             191110 1682 +    584178 I
e otoGar3.GL873533             443084 902 -  31380117 I
e saiBol1.JH378108           50457912 5050 +  54856640 I

a score=-3118.000000
s hg38.chr15_KI270850v1_alt    322683 2 +    430880 t--t
s panTro5.chr15              63476084 2 +  83230942 t--t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80433493 2 +  99763055 t--t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        33374 2 -   1709092 t--t
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17184997 2 - 121039945 t--t
i nomLeu3.chr6              I 1 C 0
s rheMac8.chr7               60874052 4 + 169600520 ttgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108400767 4 - 171882078 ttgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        11209 4 -   2311642 ttgt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         9424 4 -   1987038 ttgt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21089952 4 -  24206276 TTGt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         5140 4 -   1397330 ttgt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        28800 4 -   1784207 tttt
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1017331 4 +   1024465 tttt
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             443986 4 -  31380117 tttt
i otoGar3.GL873533          I 902 C 0
s canFam3.chr9               55257906 2 +  61074082 --tt
i canFam3.chr9              C 0 I 188
e dasNov3.JH564958             191110 1682 +    584178 I
e saiBol1.JH378108           50457912 5050 +  54856640 I

a score=738163.000000
s hg38.chr15_KI270850v1_alt    322685 109 +    430880 ttttggagataggatctcactctgtcgccag-gctggagtacagtgggtgagatcactgcttattgcagcctcaacctcctgggctcaaagtgatcctccaacatcagcc
s panTro5.chr15              63476086 109 +  83230942 ttttggagataggatctcactctgttgccag-gctggagtacagtgggtgagatcactgcttattgcagcctcaacctcctgggctcaaagtgatcctccaacatcagcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80433495 109 +  99763055 ttttggagataggatctcactctgttgccag-gctggagtacagtgggtgagatcactgcttattgcagcctcaacctcctgggctcaaagtgatcctccaacatcagcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        33376 108 -   1709092 ttttggagataggatctcactctgtcgccag-gctggagtacagtgggtgagatca-tgcttattgcagcctcaacctcctgagctcaaagtgatcctccaacaccagcc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17184999 109 - 121039945 ttttggagacaggatctcactctgtcgctgg-gctggagtacagtgggtgagatcactgcttaccgcagcctcaacctcctgggctcaaagtgatcctccaacatcagct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60874056 107 + 169600520 ttttggagataggatcttactctgttgccag-gttggagtacagtggatgagatcactgcttactgcagcctcaacctcctgggctc--agtgatcctccaatgtcagcc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108400771 107 - 171882078 ttttggagataggatcttactctgttgccag-gttggagtacagtggatgagatcactgcttactgcagcctcaacctcctgggctc--agtgatcctccaatgtcagcc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        11213 107 -   2311642 ttttggagataggatcttactctgttgccag-gttggagtacagtggatgagatcactgcttactgcagcctcaacctcctgggctc--agtgatcctccaacgtcagcc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         9428 108 -   1987038 ttttggagataggatcttactctgttgccag-gttggagtacagtgggtgagatcactgcttactgcagcctcaacctcct-ggctcaaagtgatcctccaacgtcagcc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21089956 109 -  24206276 ttttggagatacgatcttactctgttgccag-gttggagtacagtgggtgagatcactgcttactgcagcctcaacctcctgggctcaaagtgatcctccaacgtcagcc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         5144 108 -   1397330 ttttggagataggatcttactctgttgccag-gttggagtacagtgggtgagatcactgcttactgcagcctcaacctcct-ggctcaaagcgatcctccaacgtcagcc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        28804 109 -   1784207 ttttggagataggatctcactctgttgccag-gttggagtacagtgggtgagatcactgcttactgcagcctcaacctcctgggctcaaagtgatcctccaacgtcagcc
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1017335 109 +   1024465 ttgtggagataggatctggctctgtctccag-gctggagtccagtgggcgagatcactgctcattgcagcctcagcctcctgggctcaaagcgatcctccaaagtcagcc
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             443990 107 -  31380117 tagtagagacagagtctcactttattgccctcggtagagtgccatggcctca--cacaactcacagcaacctccagctccaggactt-aggcgattctcttacttcggca
i otoGar3.GL873533          C 0 C 0
e dasNov3.JH564958             191110 1682 +    584178 I
e canFam3.chr9               55257908 188 +  61074082 I
e saiBol1.JH378108           50457912 5050 +  54856640 I

a score=430928.000000
s hg38.chr15_KI270850v1_alt    322794  69 +    430880 tgttgagtagctaggacta--------caggca-tgtgcc-----------------------accaccaagtccagc-attttt-aaaatttttatgt---------acag
s panTro5.chr15              63476195  69 +  83230942 tgttgagtagctaggatta--------caggca-tgtgcc-----------------------accaccaagcccagc-attttt-aaaatttttatgt---------acag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80433604  69 +  99763055 tgttgagtagctaggacta--------caggca-tgtgcc-----------------------accaccaagcccagc-atttta-aaaatttttatgt---------acag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        33484  69 -   1709092 tgttgagtagctaggacta--------caggca-tgtgcc-----------------------accaccaagcccagc-attttt-aaaatttttatgt---------acag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17185108  70 - 121039945 tgtcgagtagctaggacta--------caggca-tgtgcc-----------------------accaccgagcccagctactttt-aaaatttttatgt---------acag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60874163  70 + 169600520 tgtcaagtagctaggacta--------caggca-tgtgcc-----------------------atcaccaagcccggctattttt-aaaatttgtgtgt---------acag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108400878  70 - 171882078 tgtcaagtagctaggacta--------caggca-tgtgcc-----------------------atcaccaagcccggctattttt-aaaatttgtgtgt---------acag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        11320  70 -   2311642 tgtcaagtagctaagacta--------caggca-tgtgcc-----------------------atcaccaagcccggctattttt-aaaatttgtgtgt---------acag
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         9536  70 -   1987038 tgtcaagtagctaggacta--------caggca-tgtgcc-----------------------atcaccaagcccagctattttt-aaaatttgtgtgt---------acag
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21090065  70 -  24206276 tgtcaagtagctaggacta--------caggca-tgtgcc-----------------------atcaccaagcccggctattttt-aaaatttgtgtgt---------acag
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         5252  70 -   1397330 tgtcaagtagctaggacta--------caggca-tgtgcc-----------------------atcaccaagcccggctattttt-aaaatttgtgtgt---------acag
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        28913  62 -   1784207 tgtcaagtagctaggacaa--------caggca-tgtgcc-----------------------atcaccaagcccggct---------aatttgtgtgt---------acag
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1017444  71 +   1024465 tgtcaagtagctaggacta--------caggaa-tgtgcc-----------------------accaccaagcccagctatttttcaaaatttttgtgt---------agac
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             444097  76 -  31380117 tcctgagtagctgggacta--------caggca-cctgcc-----------------------acaat---gcccagctcttttt-ttgttgttgttgttgcagttcgccgg
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55258096 101 +  61074082 tgttgagcacctactcctactatgtgccaggcactgtgctgctctgcactttatattcccttaattctcaactccatt-attatc-catatttttacat---------agag
i canFam3.chr9              I 188 I 257
e dasNov3.JH564958             191110 1682 +    584178 I
e saiBol1.JH378108           50457912 5050 +  54856640 I

a score=724240.000000
s hg38.chr15_KI270850v1_alt    322863 112 +    430880 accaggt----------ctcactatgttgcccaggctggt-ctcaaactcctgtgct-caagcgatcctcctgccttggcctcccaaagtg----ctggga---ttacagggatgggccactgtgcccagt
s panTro5.chr15              63476264 112 +  83230942 accaggt----------ctcactatgttgcccaggctggt-ctcaaactcctgtgct-caagcgatcctcctgccttggcctcccaaagtg----ctggga---ttacagggatgggccactgtgcccagt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80433673 112 +  99763055 accaggt----------ctcactatgttgcccaggctggt-ctcaaactcctgtgct-caagcgatcctcctgccttggcctcccaaagtg----ctggga---ttacagggatgggccactgtgcccagt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        33553  98 -   1709092 accaggt----------ctcactatgttgcccaggctggt---------------ct-caagcgatcctcctgccttggcctcccaaagtg----ctggga---ttacagggatgggccactgtgcccagt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17185178 112 - 121039945 accaggt----------ctcactatgttgcccaggctggt-ctcaaactcctgtgct-caagcaatcctcctgctttggcctcccaaagtg----ctggga---ttacagggatgggccactgtgcccagt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60874233 112 + 169600520 acctgga----------ctcactgtgttgcccaggctggt-ctcgaactcctgtgct-caagcgaacctcctgccttggcctcccaaagtg----ctggga---ttacaggcatgggccactgtgcccagt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108400948 112 - 171882078 acctgga----------ctcactgtgttgcccaggctggt-ctcgaactcctgtgct-caagcgaacctcctgccttggcctcccaaagtg----ctggga---ttacaggcatgggccactgtgcccagt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        11390 112 -   2311642 acctgga----------ctcactgtgttgcccaggctggt-ctcgaactcctgtgct-catgcgaacctcctgccttggcctcccaaagtg----ctggga---ttacaggcatgggccactatgcccagt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         9606 112 -   1987038 acctgga----------ctcactgtgttgcccaggctggt-ctcgaactcctgtgct-caagcgaacctcctgccttggcctcccaaagtg----ctggga---ttacaggcatgggccactgtgctcagt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21090135 112 -  24206276 acctgga----------ctcactatgttgcccaggctggt-ctcgaactcctgtgct-caagcgagcctcctgccttggcctcccaaagtg----ctggga---ttacaggcatgggccactgtgcccagt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         5322 112 -   1397330 acctgga----------ctcactgtgttgcccaggctggt-ctcgaactcctgtgct-caagcgaacctcctgccttggcctcccaaagtg----ctggga---ttacaggcatgggccactgtgcccagt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        28975 112 -   1784207 acctgga----------ctcactatgttgcccaggctggt-ctcgaactcctgtgct-caagcgagcctcctgccttggcctcccaaagtg----ctggga---ttacaggcatgggccactgtgcccagt
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1017515 112 +   1024465 accaaat----------ctcactatgttgcccaagcttgt-ctcaaactcctgggct-caagcgatcctcctgccttggcctcccatggtt----ctggga---ttacaggcatgggccactgtgcACAGT
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             444173 122 -  31380117 gccaggttcaaaccccccacacttggtatatggggctggcaccccacccactgagccacaggcgccacccctagtttcttcttttaacatggctactggaaaatataaaattatagac---------taag
i otoGar3.GL873533          C 0 C 0
e dasNov3.JH564958             191110 1682 +    584178 I
e canFam3.chr9               55258197 257 +  61074082 I
e saiBol1.JH378108           50457912 5050 +  54856640 I

a score=603539.000000
s hg38.chr15_KI270850v1_alt    322975 66 +    430880 cCCATGTTATATTTC-TATGGGACAGCTCTGGTCTT--GACC-ATGCCTCCCTCCCTGGACCTGGTCCCA
s panTro5.chr15              63476376 66 +  83230942 cCCATGTTATATTTC-TATGGGACAGCTCTGGTCTT--GACC-ATGCCTCCCTCCCTGGACCTGGTCCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80433785 66 +  99763055 cCCATGTTATATTTC-TATGGGACAGCTCTGGTCTT--GACC-ATGCCTCCCTCCCTGGACCTGGTCCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        33651 64 -   1709092 -cCATGTTATATTTC-TATGGGACAGCTCTGGTCTT--GACC-ATGCCT-CCTCCCTGGACCTGGTCCCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17185290 66 - 121039945 cCCATGTCATATTTC-TGTGGGACAGCTCTGGTCTT--GACC-GTGCCTCCCTCCCTGGACCTGGTCCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60874345 66 + 169600520 cTCACGTTATATTTC-CATGGGACAGCTCTGGTCTT--GACC-GTGCCTCCCTCCCTGGACCTGGTCCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108401060 66 - 171882078 cCCACGTTATATTTC-CATGGGACAGCTCTGGTCTT--GACC-GTGCCTCCCTCCCTGGACCTGGTCCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        11502 66 -   2311642 cCCACGTTATATTTC-CATGGGACAGCTCTGGTCTT--GACC-GTGCCTCCCTCCCTGGACCTGGTCCCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         9718 66 -   1987038 cCCACGTTATATTTC-CATGGGACAGCTCTGGTCTT--GACC-GTGCCTCCCTCCCTGGACCTGGTCCCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21090247 66 -  24206276 cCCACGTTATATTTC-CATGGGACAGCTCTGGTCTT--GACC-GTGCCTCCCTCCCTGGACCTGGTCCCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         5434 66 -   1397330 cCCACGTTATATTTC-CATGGGACAGCTCTGGTCTT--GACC-GTGCCTCCCTCCCTGGACCTGGTCCCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        29087 66 -   1784207 cCCACGTTATATTTC-CATGGGACAGCTCTGGTCTT--GACC-GTGCCTCCCTCCCTGGACCTGGTCCCA
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1017627 66 +   1024465 CCCATGCTATATTTC-TATGGGACAGCTCTGGTCTA--GACC-ATGCCTCCCTCCCTGGACCTGGCCCCA
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             444295 68 -  31380117 cctacgttgcatttc-tattagacagctctgGGGCTGGGAAT-TTGCCTCCCTCTCTGGACCTAGTCTCG
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55258454 68 +  61074082 CTCACATTATATTTCTTTTTGGACAGCTCTAGTGTG--GACCTATACCTACCTCTCTAGACCTGATCCCA
i canFam3.chr9              I 257 I 2
s dasNov3.JH564958             192792 66 +    584178 ctcacattctctttc-ttttgggcagctctgGTCTG--GACG-GTGCCTCCTTCACTAGATCTGGTCCCA
i dasNov3.JH564958          I 1682 C 0
e saiBol1.JH378108           50457912 5050 +  54856640 I

a score=5354.000000
s hg38.chr15_KI270850v1_alt    323041 2 +    430880 TA
s panTro5.chr15              63476442 2 +  83230942 TA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80433851 2 +  99763055 TA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        33715 2 -   1709092 TA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17185356 2 - 121039945 TA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60874411 2 + 169600520 GA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108401126 2 - 171882078 GA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        11568 2 -   2311642 GA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         9784 2 -   1987038 GA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21090313 2 -  24206276 GA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         5500 2 -   1397330 GA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        29153 2 -   1784207 GA
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1017693 2 +   1024465 GA
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             444363 2 -  31380117 TG
i otoGar3.GL873533          C 0 C 0
s dasNov3.JH564958             192858 2 +    584178 CA
i dasNov3.JH564958          C 0 C 0
e canFam3.chr9               55258522 2 +  61074082 I
e saiBol1.JH378108           50457912 5050 +  54856640 I

a score=1717404.000000
s hg38.chr15_KI270850v1_alt    323043 201 +    430880 GGGCTGGTCGGCATCTCTCCCAGG-CCAGCATGGCCACCTCCATCCCCAGTGCCACAGTC-GCCCCCTGCCCCCATGGGGCAGTGCATGAACATTGTTGATCATGAGGTGCATGATGGTCCTGGGCAGGAGACCAACCATGAGGTCCCACACTGTCTTGTTGA-CAATGGCTGTATAGGAGTCTACCAGGTTCTGGGTGGTCTC
s panTro5.chr15              63476444 200 +  83230942 GGGCTGGTCGGCATCTCTCCCAGG-CCAGCATGGCCACCTCCATCCCCAGTGCCACAGTC-GCCCC-TGCCACCATGGGGCAGTGCATGAACATTGTTGATTATGAGGTGCATGATGGTCCTGGGCAGGAGACCAACCATGAGGTCCCACACTGTCTTGTTGA-CAATGGCCGTATAGGAGTCTACCAGGTTCTGGGTGGTCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80433853 200 +  99763055 GGGCTGGTCGGCATCTCTCCCAGG-CCAGCATGGCCACCTCCATCCCCAGTGCCACAGTC-GCCCC-TGCCACCATGGGGCAGTGCATGAACATTGTTGATTATGAGGTGCATGATGGTCCTGGGCAGGAGACCAACCATGAGGTCCCACACTGTCTTGTTGA-CAATGGCCGTATAGGAGTCTACCAGGTTCTGGGTGGTCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        33717 202 -   1709092 GGGCTGGTCTGCATCTCTCCCAGG-CCAGCATGGCCACCTCCATCCCCAGTGCCACAGTC-GCCCCCTGCCCTCATGGGGCAGTGCATGAACATTGTTGATCATGAGGTGCATGATGGTCCTGGGCAGGAGACCAACCAGGAGGTCCCACACTGTCTTGTTGACCAATGGCCATATAGGAGTCTACCAGGTTCTGGGTGGTCTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17185358 201 - 121039945 GGGCTGGTCCACATCTCTCCCAGG-CCAACATGGCCACCTCCATCCCCAGTGCCACAGTC-ACCCCCTGCCCACATGGGGCAGTGCATGCACATTGTTGATCATGAGGTGCATGATGATCCTGGGCATGAGACCAACCATGAGGTCCCACACTGTCTTGTTGA-CAATGGCCATATAGGAGTCTACCAGGTTCTGGGTGGTCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60874413 201 + 169600520 GGGCTGTTTGCCATCTCCCCCAGG-CCAACATGGCCACCTGCATCCCCAGTGCCATAGGA-GCCCCCTGCCCGCATGGGGCAGTGCATGCTCATTGTTGATCATGAGGTGCATGATGGTCCTTGTCATGAGACCAACCACGAGGTCCAGCACGGTCTTGTTGA-CAATGGCCATATAGGAGTCTACCAGGTTCTGGGTGGTCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108401128 201 - 171882078 GGGCTGTTTGCCATCTCCCCCAGG-CCAACATGGCCACCTGCATCCCCAGTGCCATAGGA-GCCCCCTGCCCGCATGGGGCAGTGCATGCTCATTGTTGATCATGAGGTGCATGATGGTCCTTGTCATGAGACCAACCACGAAGTCCAGCACGGTCTTGTTGA-CAATGGCCATATAGGAGTCTACCAGGTTCTGGGTGGTCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        11570 201 -   2311642 GGGCTGTTTGCCATCTCCCCCAGG-CCAACATGGCCACCTGCATCCCCAGTGCCATAGGA-GCCCCCTGCCCGCATGGGGCAGTGCATGCTCATTGTTGATCATGAGGTGCATGATGGTCCTTGTCATGAGACCAACCACGAGGTCCAGCACGGTCTTGTTGA-CAATGGCCATATAGGAGTCTACCAGGTTCTGGGTGGTCTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         9786 201 -   1987038 GGGCTGTTTGCCATCTCCCCCAGG-CCAACATGGCCACCTGCATCCCCAGTGCCATAGGA-GCCCCCTGCCCGCATGGGGCAGTGCATGCTCATTGTTGATCATGAGGTGCATGATGGTCCTTGTCATGAGACCAACCACGAGGTCCAGCACGGTCTTGTTGA-CAATGGCCATATAGGAGTCTACCAGGTTCTGGGTGGTCTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21090315 201 -  24206276 GGGCTGTTTGCCATCTCCCCCAGG-CCAACATGGCCACCTGCATCCCCAGTGCCACAGGA-GCCCCCTGCCCGCATGGGGCAGTGCATGCTCATTGTTGATCATGAGGTGCATGATGGTCCTTGTCACGAGACCAACCACGAGGTCCAGCACAGTCTTGTTGA-CAATGGCCATATAGGAGTCTACCAGGTTCTGGGTGGTCTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         5502 201 -   1397330 GGGCTGTTTGCCATCTCCCCCAGG-CCAACATGGCCACCTGCATCCCCAGTGCCATAGGA-GCCCCCTGCCCGCATGGGGCAGTGCATGCTCATTGTTGATCATGAGGTGCATGATGGTCCTTGTCATGAGACCAACCACGAGGTCCAGCACGGTCTTGTTGA-CAATGGCCATATAGGAGTCCACCAGGTTCTGGGTGGTCTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        29155 201 -   1784207 GGACTGTTTGCCATCTCCCCCAGG-CCAACATGGCCACCTGCATCCCCAGTGCCACAGGA-GCCCCCTGCCCGCATGGGGCAGTGCATGCTCATTGTTGATCATGAGGTACATGATGGTCCTTGTCATGAGACCAACCACGAGGTCCAGCACGGTCTTGTTGA-CAATGGCCATATAGGAGTCTACCAGGTTCTGAGTGGTCTC
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1017695 201 +   1024465 GGGCTGGTGGGCATCTCCCACAGG-CCAACATGGCCACATGCGTCCCCAGTGCCACAGGA-GCCCCCTGCCCCCATGAGGCGGTGCATGCATTTTGTTGATCTTGAGGTACATGGTGGTCTTGGGCCTGAGAGCAACCATGAGGTCCCGCACCGTCTTGTTGA-CAATGGCCATATAGGAGTCCACCAGGTTCTGGGTGGTCTC
i cebCap1.NW_016107979v1    C 0 C 0
s otoGar3.GL873533             444365 189 -  31380117 GGGCTGGCCAGCATCTCCCCCAGG-CCAACCTGGCTTCCTGCCTCCCTGATCCCACAGGC-GCACCCCGCCCTCATGTGGTGGTTCACATACATTGTTGATCATGAGATGCATGATGGTCTTGGGCATGAG------------GTCCCGCACTGTCTTGTTAA-CAATGGCCATGTATGAGTCTACCAGGTTTCGGATGGTCTC
i otoGar3.GL873533          C 0 C 0
s canFam3.chr9               55258524 188 +  61074082 GGACTGGTCTGTGCCTCCCCCAGG-CCAATCTGGCCAC-TCCCTCCCTGGTCCCAAAAGA-GCACCCACTGCCCACGAAGTGTTGCACCCACATTGTTGATCATGAGGTGCATGATGGTCTTCGGCATGAG------------GTCACGCACGGTCTTGTTCA-CGATGGCCATGTATGAGTCTACCAGGTTCCGGATGGTCTC
i canFam3.chr9              I 2 C 0
s dasNov3.JH564958             192860 191 +    584178 GGGCTGGTCTGTGCTTCTCCCCGGACCGACCTGGCCGCCCGCCTCCCCAGAACCACAGGACGCCCCCGCCCCCCGCGAGGTGGCCCACGCACGTTGTTGATCATGAGGTGCATGATGGTCTTAGGCATGAG------------GTCCCTCACAGTCTTGTTGA-CAATGGCCATGTACGAGTCCACCAGGTTCCGGATGGTCTC
i dasNov3.JH564958          C 0 N 0
e saiBol1.JH378108           50457912 5050 +  54856640 I

a score=10500.000000
s hg38.chr15_KI270850v1_alt    323244 1 +    430880 C
s panTro5.chr15              63476644 1 +  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80434053 1 +  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        33919 1 -   1709092 C
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17185559 1 - 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60874614 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108401329 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        11771 1 -   2311642 C
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         9987 1 -   1987038 C
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21090516 1 -  24206276 C
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         5703 1 -   1397330 C
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        29356 1 -   1784207 C
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107979v1      1017896 1 +   1024465 C
i cebCap1.NW_016107979v1    C 0 N 0
s otoGar3.GL873533             444554 1 -  31380117 C
i otoGar3.GL873533          C 0 N 0
s canFam3.chr9               55258712 1 +  61074082 C
i canFam3.chr9              C 0 N 0
e saiBol1.JH378108           50457912 5050 +  54856640 I

a score=117018.000000
s hg38.chr15_KI270850v1_alt    323245 20 +    430880 TTTAAGATCTATTTGCTtag
s panTro5.chr15              63476645 20 +  83230942 TTTAAGATCTATTTGCTTAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80434054 20 +  99763055 TTTAAGATCTATTTGCTTAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        33920 20 -   1709092 TTTAAGATCTATTTGCTtag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17185560 20 - 121039945 TTTAAGATCTATTTGCCtag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60874615 20 + 169600520 TTTAAGATCTATTTGCTtag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108401330 20 - 171882078 TTTAAGATCTATTTGCTtag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        11772 20 -   2311642 TTTAAGATCTATTTGCTtag
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1         9988 20 -   1987038 TTTAAGATCTATTTGCTtag
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21090517 20 -  24206276 TTTAAGATCTATTTGCTtag
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         5704 20 -   1397330 TTTAACATCTATTTGCTtag
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        29357 20 -   1784207 TTGAAGATCTATTTGCTtag
i colAng1.NW_012117110v1    C 0 C 0
e saiBol1.JH378108           50457912 5050 +  54856640 I

a score=72384.000000
s hg38.chr15_KI270850v1_alt    323265 10 +    430880 aatagtgttt
s panTro5.chr15              63476665 10 +  83230942 AATAGTGTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80434074 10 +  99763055 AATAGTGTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        33940 10 -   1709092 aatagtgttt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17185580 10 - 121039945 aatagtgttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60874635 10 + 169600520 aatagtgttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108401350 10 - 171882078 aatagtgttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        11792 10 -   2311642 aatagtgttt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        10008 10 -   1987038 aatagtgttt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21090537 10 -  24206276 aatagtgttt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         5724 10 -   1397330 aatagtgttt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        29377 10 -   1784207 aatagtgttt
i colAng1.NW_012117110v1    C 0 C 0
s aotNan1.NW_018505940v1     40628931 10 +  42888418 aatagtgttt
i aotNan1.NW_018505940v1    N 0 C 0
e saiBol1.JH378108           50457912 5050 +  54856640 I

a score=187037.000000
s hg38.chr15_KI270850v1_alt    323275 26 +    430880 actagaggtgaggaaggg------ggaggagg
s panTro5.chr15              63476675 26 +  83230942 ACTAGAGGTGAGGAAGGG------GGAGGAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80434084 26 +  99763055 ACTAGAGGTGAGGAAGGG------GGAGGAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        33950 26 -   1709092 actagaggtgaggaaggg------ggaggagg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17185590 32 - 121039945 actagaggtgaggaagagtaaggcggaggggg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60874645 32 + 169600520 actagaggtgaggaagggtaagggggaggggg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108401360 32 - 171882078 actagaggtgaggaagggtaagggggaggggg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        11802 32 -   2311642 actagaggtgaggaagggtaagggggaggggg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        10018 32 -   1987038 actagaggtgaggaagggtaagggggaggagg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21090547 32 -  24206276 actagaggtgaggaagggtaagggggaggggg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         5734 32 -   1397330 actagaggtgaggaagagtaagggggaggagg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        29387 32 -   1784207 actagaggtgaggaagggtaagggggaggggg
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50462962 26 +  54856640 ACTAGAGGTGAGAAAGAGTAAGGGGG------
i saiBol1.JH378108          I 5050 I 6
s aotNan1.NW_018505940v1     40628941 26 +  42888418 actagaggtgagaaagggtaagggag------
i aotNan1.NW_018505940v1    C 0 I 6

a score=3697057.000000
s hg38.chr15_KI270850v1_alt    323301 454 +    430880 tagccaaaggttggctaacagatTAACAGATATAAGAGTACATggctgaatgtggtggctcacacactagtgtaatcctagctctctgggaggctgagcggggaggatcacttgaggccaggagtgcacggccagcctgggtaacacaggaggtattatgtctacaaaaaatttaaaaattagctaggcatggtggtccatacctgtggtcccggctactAAAACCCAAATTGAAAGACAAAATAAAT----CAACCATGACTTTTCACATTTTGTGAATGTGACcaaaatgtgaccaaggactgactgaatt--acatagtattacatca--gttacatttcctgattttgatcattgtattgtggttatataaaat-aatgttcttgttctggaagtaacac-tgaaatatttgggagtaaatgggcacatctccaacttaacttcaagtggagcagaaaaa
s panTro5.chr15              63476701 454 +  83230942 TAGCCAAAGGTTGGCTAACAGTTTAACAGATATAAGAGTACATggctgaatgcggtggctcacacactagtgtaatcctagctctctgggaggctgaggggggaggatcacttgaggccaggagtgcacggccagcctgggtaacacaggaggtactatgtctacaaaaaatttaaaaattagctaggcatggtggtccatacctgtggtcccggctactAAAACCCAAATTGCAAGACAAAATAAAT----CAACCATGACTTTTCACATTTTGTGAATGTGACcaaaatgtgaccaaggactgactgaatt--acatagtattacatca--gttacatttcctgattttgatcattgtattgtggttatataaaat-aatgttcttgttctggaagtaacac-tgaaatatttgggagtaaatgggcacatctccaacttaacttcaagtggagcggaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80434110 454 +  99763055 TAGCCAAAGGTTGGCTAACAGATTAACAGATATAAGAGTACATggctgaatgcagtggctcacacactagtgtaatcctagctctctgggaggctgaggggggaggatcacttgaggccaggagtgcacggccagcctgggtaacacaggaggtattatgtctacaaaaaatttaaaaattagctaggcatggtggtccatacctgtggtcccggctactAAAACCCAAATTGCAAGACAAAATAAAT----CAACCATGACTTTTCACATTTTGTGAATGTGACcaaaatgtgaccaaggactgactgaatt--acatagtattacatca--gttacatttcctgattttgatcattgtattgtggttatataaaat-aatgttcttgttctggaagtaacac-tgaaatatttgggagtaaatgggcacatctccaacttaacttcaagtggagcggaaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        33976 452 -   1709092 tagccaaaggttggctaacagattaacaaaTATAAGAGTACATggctgaatgtggtggctcacacactagtgtaaccctagctctctggg-ggctgaggggggaggatcacttgaggccaggagtacatggccagcctgggtaacacaggaggtattatgtctacaaaaaatttaaaaattagctaggcacagtggtccatacctgtggtcctggctactAAAGCCCAAATTGAAAGACAAAATAAAT----CAACCATGACTTTTCACATTTTGTGAATGtgacc-aaatgtgaccaaggactgactgaatt--acatagtattacatca--gttacatttcctgattttgatcattgtattgtggttatataaaat-aatgttcttgttctggaagtaacac-tgaaatatttgggagtaaatgggcacatctccaacttaacttcaagtggagcagaaaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17185622 454 - 121039945 tagccaaaggttggctaacagatTAACAGATATGAGAGTACATggctgaatgtggtggctcacacactagtgtaatcctagctctctgggaggctgagtggggaggatcacttgaggccaggagttcacggccagcctgggtaacataggagatattatgtctacaaaaaatttaaaaattagctaggcatggtggtctatacctgtggtcccggctactAAAGCCCAAATTGAAGGACAAAATAAAT----CAAC--TGACTTTTCACATTTTGTGAATGTGACcaaaatgtgaccaaggactgactgaatt--acatagtattatatcaatgttacatttcctgactttgatcattgtattgtggttatataaaat-aatgttcttgttctggaagtaacac-tgaaatatttgggagtaaatgggcacatctccaacttaacttcaagtggagcagaaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60874677 448 + 169600520 tagccaaaggttggctaacaggttaacagatacaagagtacaTggctgaatgtggtggctcacacactggtgtaatcctagctctctgggaggctgaggggagaggatcacttgaggtcaggagttcatggccagcctgggcaacataggagacattaggtctacaaaaaatttaaaaattagctacgcatggtggtccatacctgtggtcccggctactAAAGCCCAAATTGAAGGACAAAATAAAT----CAATC---ACTTTTCACATTTTGTGAATGTGATcaaaatgtgaccaaggactcactgaatt--acatagtattatatcaatgttacatttcctgattttgatcattgcattgtggttatataaaat-aatgttcttgttctggaagtaacac-tgaaatatttgggagcaaatgggcagatctcc-----aacttcaagtggagcagaaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108401392 442 - 171882078 tagccaaaggttggctaacaggttaacagatacaagagtacaTggctgaatgtggtggctcacacactggtgtaatcctagctctctgggaggctgaggggagaggatcacttgaggtcaggagttcatggccagcctgggcaacataggagacattaggtctacaaaaaatttaaaaattagctacgcatggtggtccatacctgtggtcccggctactAAAGCCCAAATTGAAGGACAAAATAAAT----CAATC---ACTTTTCACATTTTGTGAATGTGATCAAAATGTGACCAAGGACTCACTGAATT--ACatagtattatatcaatgttacatttcctgattttgatcattgcattgtggttatataaaat-aatgttcttgttctggaagtaacac-tgaaatatttgggagcaaatgggcagatctc-----------caagtggagcagaaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        11834 449 -   2311642 tagccaaaggttggctaacaggttaacagatacaagagtacaTggctgaatgtggtggctcacacactggtgtaatcctagctctctgggaggctgaggggagaggatcacttgaggtcaggagttcatggccagcctgggcaacataggagacattaggtctacaaaaaatttaaaaattagctaggcatggtggtccatacctgtggtcccggctactAAAGCCCAAATTGAAGGACAAAATAAAT----CAATC---ACTTTTCACATTTTGTGAATGTGATCAAAATGTGACCAAGGACTCACTGAATT--ACatagtattatatcaatgttacatttcctgattttgatcattgcattgtggttatataaaataaatgttcttgttctggaagtaacac-tgaaatatttgggagcaaatgggcagatctcc-----aacttcaagtggagcagaaaaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        10050 451 -   1987038 tagccaaaggttggctaacaggttaacagatacaagagtacaTggctgaatgtggtggctcacacactggtgcaatcctagctctctgggaggctgaggggagaagatcacttgaggtcaggagttcatggccagcctgggcaacataggagatattaggtctacaaaaaatttaaaaattagctaggcatggtggtccatacctgtggtcccggctactAAAGCCCAAATTGAAGGACAAAATAAAT----CAATCACGACTTTTCACATTTTGTGAATGTGATcaaaatgtgaccaaggactcactgaatt--acatagtattatatcaatgttacatttcctgattttgatcattgcattgtggttatataaaat-aatgttcttgttctggaagtaacac-tgaaatatttgggagcaaatgggcagatctcc-----aacttcaagtggagcagaaaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21090579 453 -  24206276 tagccaaaggttggctaacaggttaacagatacaagagtacaTggctgaatgtggtggctcacacactagtgtaatcctagctctctgggaggctgaggggagaggatcactcgaggccaggagttcatggccagcgtgggcaacataggagacattatgtctacaaaaaatttaaaaattagctaggcatggtggtccacacctgtggtcccggctactAAAGCCCAAATTGAAGGACAAAATAAAT----CAATCACGACTTTTCACATTTTGTGAATGTGATcaaaatgtgaccaaggactcactgaattacacatagtattatatcaatgttacatttcctgatttttatcattgcattgtggttatataaaat-aatgttcttgttctagaagtaacac-tgaaatatttgggagcaaatgggcagatctcc-----aacttcaagtggagcagaaaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         5766 452 -   1397330 tagccaaaggttggctaacaggttaacagatacaagagtacaTggctgaatgtggtggctcacacactggtgtaatcctagctctctgggaggctgaggggagaggatcacttgaggtcaggagttcatggccagcctgggcaacataggagatattaggtctacaaaaaatttaaaaattagctaggcatggtggtccatacctgtggtcccggctactAAAGCCCAAATTGAAGGACAAAATAAAT----CAATCACGACTTTTCACATTTTGTGAATGTGATCAAAATGTGACCAAGGACTCACTGAGTT--ACatagtattatatcaatgctacatttcctgattttgatcattgccttgtggttatataaaat-aatgttcttgttctggaagcaacacttgaaatatttgggagcaaaggggcagatctcc-----aacttcaagtggagcagaaaaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        29419 450 -   1784207 tagccaaaggttggctaacagattaacagatacaagagtacaTggctgaatgtggtagctcacacactagtgtaatcctagctctctgggaggctgaggggagaggatcacttgaggctgggagttcaaggccagcctgggcaacataggagacattatgtctac-aaaaatttaaaaattagctaggcatggtggtccatacctgtggtcccggctactAAAGCCCAAATTGAAGGACAAAATAAAT----CAATCACAACTTTTCACATTTTGTGAATGTGATcaaaatgtgaccaaggactcactgaatt--atatagtattatatcaatgttacatttcctgattttgatcattgcattgtggttatataaaat-aatgttcttgttctggaagtaacac-tgaaatatttgggagcaaatgggcagatctcc-----aacttcaagtggagcagaaaaa
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50462994 429 +  54856640 TAGCCAAAAATCGGCTAACAGGTTAACAGATAT-TGAGTACATGACTGAGTGTAATGGTTTACACACTAGtgtgatcctagcactctgggacgctgagatgggaggatcacttgaggccaggagttcaagaccagcctgggaaacataggag-----atgtctacaaaaacttaaaaaattagctaggcatggtggtacatacctgtggtcccagctactcAAGGCCAAACTGAAGGACAAAATAAAT----CAACCACAACTTTTCACATTTTGTGACTGTGACCAAGG---------------ACTGAATT--ATatcgtattgtatcaatgttacgcttcctgattttgaccattgtattatggttacataaaat-aa------tgttctggaaataacac-tgaaatatttgggggtaaatgggcacatctccaacttaacctcaagtggaacagaaaaa
i saiBol1.JH378108          I 6 C 0
s cebCap1.NW_016107610v1       606397 431 -   2910086 TAGCCAAGGATCGGCTAACAGGTTAACAGATA--CGAGTACATGGCTGAGTGTAATCGTTCACACACTAGtgtgatcctagcactctgggaggctgagatgggaggatcacttgaggccaggagttcaagaccagcgtgggcaacatgggag-----atgtctacaaaaactttaaaaattagctaggcatggtggtgcatacctgtgatcccagctactcAAGCCCAAACTGAAGGACAAAATCAATCAACCAACCACAACTTTTCACATTTTGTGACTGTGACCAAGg---------------actgaatt--atattgtattgtatcaatgttacgcttcctgattttga-cattgtattatggttacataaaat-aa------tgttctggaaataacac-tgaaatatttgggagtaaatgggcacatcttcaacttaacctcaagtggaacagaaaaa
i cebCap1.NW_016107610v1    N 0 I 40
s aotNan1.NW_018505940v1     40628973 428 +  42888418 tagccaaagattggctaaCAGGTTAACAGATA--TGAGTACATggctgagtgtaatgattcacacactagtgtgatcctagcactctgggaggctgagatgggaggatcacttgaggccaggagttcaagaccagcctgggcaacat---ag-----atgtctacaaaaactttaaaaattagctaggcatggtggtacatacctgtggtcccagctactcAAGCCCAAACTGAAGGACAAAATAAAT----CAACCACAACTTTTCACATTTTGTGACTGTGACCAAGG---------------ACTGAATT--ATatcgtattgtatcaatgttacgcttcctgattttgaccattgtattatggttacataaaat-aatg---ttgttctggaaataacac-tgaaatatttgggagtaaatgggcacatctccaacttaacctcaagtggaacagaaaaa
i aotNan1.NW_018505940v1    I 6 C 0

a score=16562.000000
s hg38.chr15_KI270850v1_alt    323755 2 +    430880 aa
s panTro5.chr15              63477155 2 +  83230942 aa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80434564 2 +  99763055 aa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        34428 2 -   1709092 aa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17186076 2 - 121039945 aa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60875125 2 + 169600520 aa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108401834 2 - 171882078 aa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        12283 2 -   2311642 aa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        10501 2 -   1987038 aa
i cerAty1.NW_012002657v1    C 0 I 73
s chlSab2.chr29              21091032 2 -  24206276 aa
i chlSab2.chr29             C 0 I 53
s manLeu1.NW_012106908v1         6218 2 -   1397330 aa
i manLeu1.NW_012106908v1    C 0 I 75
s colAng1.NW_012117110v1        29869 2 -   1784207 aa
i colAng1.NW_012117110v1    C 0 I 72
s saiBol1.JH378108           50463423 2 +  54856640 aa
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40629401 2 +  42888418 aa
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107610v1       606828 40 -   2910086 I

a score=34704.000000
s hg38.chr15_KI270850v1_alt    323757 9 +    430880 gttgtgtgt
s panTro5.chr15              63477157 9 +  83230942 gttgtgtgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80434566 9 +  99763055 gttgtgtgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        34430 9 -   1709092 gttgtgtgt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17186078 9 - 121039945 GTTTTGTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60875127 9 + 169600520 gttgtgtgt
i rheMac8.chr7              C 0 I 65
s macFas5.chr7              108401836 9 - 171882078 gttgtgtgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        12285 9 -   2311642 gttgtgtgt
i macNem1.NW_012011945v1    C 0 I 63
s saiBol1.JH378108           50463425 9 +  54856640 gttgtgtgt
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40629403 9 +  42888418 ggtgtgtgt
i aotNan1.NW_018505940v1    C 0 C 0
e cebCap1.NW_016107610v1       606828 40 -   2910086 I
e colAng1.NW_012117110v1        29871 72 -   1784207 I
e manLeu1.NW_012106908v1         6220 75 -   1397330 I
e chlSab2.chr29              21091034 53 -  24206276 I
e cerAty1.NW_012002657v1        10503 73 -   1987038 I

a score=3767.000000
s hg38.chr15_KI270850v1_alt    323766 2 +    430880 gt
s panTro5.chr15              63477166 2 +  83230942 gt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80434575 2 +  99763055 gt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        34439 2 -   1709092 gt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17186087 2 - 121039945 GT
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108401845 2 - 171882078 at
i macFas5.chr7              C 0 C 0
s saiBol1.JH378108           50463434 2 +  54856640 at
i saiBol1.JH378108          C 0 I 24
s aotNan1.NW_018505940v1     40629412 2 +  42888418 gt
i aotNan1.NW_018505940v1    C 0 I 60
e cebCap1.NW_016107610v1       606828 40 -   2910086 I
e colAng1.NW_012117110v1        29871 72 -   1784207 I
e manLeu1.NW_012106908v1         6220 75 -   1397330 I
e chlSab2.chr29              21091034 53 -  24206276 I
e cerAty1.NW_012002657v1        10503 73 -   1987038 I
e macNem1.NW_012011945v1        12294 63 -   2311642 I
e rheMac8.chr7               60875136 65 + 169600520 I

a score=4660.000000
s hg38.chr15_KI270850v1_alt    323768 4 +    430880 ccat
s panTro5.chr15              63477168 4 +  83230942 ccat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80434577 4 +  99763055 ccat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        34441 4 -   1709092 ccat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17186089 4 - 121039945 ccat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108401847 4 - 171882078 acat
i macFas5.chr7              C 0 I 33
e aotNan1.NW_018505940v1     40629414 60 +  42888418 I
e cebCap1.NW_016107610v1       606828 40 -   2910086 I
e colAng1.NW_012117110v1        29871 72 -   1784207 I
e manLeu1.NW_012106908v1         6220 75 -   1397330 I
e chlSab2.chr29              21091034 53 -  24206276 I
e cerAty1.NW_012002657v1        10503 73 -   1987038 I
e macNem1.NW_012011945v1        12294 63 -   2311642 I
e rheMac8.chr7               60875136 65 + 169600520 I
e saiBol1.JH378108           50463436 24 +  54856640 I

a score=355863.000000
s hg38.chr15_KI270850v1_alt    323772 416 +    430880 ggaatactatgcagccataaaaaaggatgagttcatgtcctttgtatggacatggatgaagctagaaaccatcattctgagcaaactgtcacaaggacagaaaaccaaacaccgcatgttctcactcataggtgggaactgaacaatgagaacacttgggacacaggatggggaacatcgcacaccggggcctgtcatggggttgcaggagggatagcattaggagatagacctaatataaatgataagttaacaggtggagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtataacaataatta--aaaaaaaATAAATCGTTAAAATAAAGAATA--------AATGTAATAGACTTTCTTGAATATAAAAAGT-T-GTGTGT
s panTro5.chr15              63477172 418 +  83230942 ggaatactatgcagccataaaaaaggatgagttcatgtcctttgtagggacatggatgaagctagaaaccatcattctgagcaaactatcacaaggacagaaaaccaaacaccgcatgttctcactcataggtgggaactgaacaatgagaacacttgggacacaggatggggaacatcgcacactggggcctgtcatggggttaggggagggatagcattaggagatagacctaatataaatgataagttaacgggtggagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtataacaataataattaaagaaaataaatcgttaaaataaaaaata--------aatgtAATAGACTTTCTTGAATATAAAAAGT-T-GTGTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80434581 419 +  99763055 ggaatactatgcagccataaaaaaggatgagttcatgtcctttgtagggacatggatgaagctagaaaccatcattctgagcaaactatcacaaggacagaaaaccaaacaccgcatgttctcactcataggtgggaactgaacaatgagaacacctgggacacaggatggggaacatcgcacactggggcctgtcatggggttaggggagggatagcattaggagatagacctaatataaatgataagttaacgggtggagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtataacaataataaTTAAAGAAAATAAATCGTTAAAATAAAAAATA--------AATGTAATAGACTTTCTTGAATATAAAAAGT-TAGTGTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        34445 416 -   1709092 ggaatactatgcagccataaaaaaggatgagttcatgtcctttgtagggacatggatgaagctagaaaccatcattctgagcaaactatcacaaggacagaaaaacaaacaccgcatgttctcactcataggtgggaactgaacaatgagaacacttgggacacaggatggggaacatcgcacaccggggcctgtcatggggttgggggagggatagcattaggagatagacctaatataaatgataagttaatgggtggagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtataacaataatta-----aaaaaTAAATCGTTAAAATAAAGAAAAAAAG----AATGTAATAGACTTTCTTGAATAT-AAAAGT-t-gtgtgt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17186093 420 - 121039945 ggaaaactatgcagccataaaaaaggatgagttcatgtcctctgtagggacatggatgaagctagaaaccatcattctgagcaaactatcgcaaggacagaaaaccaaacaccacatgttctcactcataggtgggaattgaacaatgagaacactt-ggacacagggtggggaacatcacacaccggggcctgtcatggggttgggagagggatagcattaggagatagacctaatataaatgacaagttaatgggtggagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtataataattttaa------aaaataaaTCGTTAAAATAAAGAAAAAAAGAAAAAATGTTATAGATTTTCTTGAATATAAAAAgtgt-gtgtgt
i nomLeu3.chr6              C 0 C 0
e aotNan1.NW_018505940v1     40629414  60 +  42888418 I
e cebCap1.NW_016107610v1       606828  40 -   2910086 I
e colAng1.NW_012117110v1        29871  72 -   1784207 I
e manLeu1.NW_012106908v1         6220  75 -   1397330 I
e chlSab2.chr29              21091034  53 -  24206276 I
e cerAty1.NW_012002657v1        10503  73 -   1987038 I
e macNem1.NW_012011945v1        12294  63 -   2311642 I
e macFas5.chr7              108401851  33 - 171882078 I
e rheMac8.chr7               60875136  65 + 169600520 I
e saiBol1.JH378108           50463436  24 +  54856640 I

a score=7058.000000
s hg38.chr15_KI270850v1_alt    324188 16 +    430880 GTGTGt--------------atatatatat
s panTro5.chr15              63477590 30 +  83230942 GTGTGTGtatatgtatatatatatatatat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80435000 12 +  99763055 GTGTGT------------------GTGtat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        34861 12 -   1709092 gtgtgt------------------gtgtgt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17186513 16 - 121039945 gtgtgt--------------gtgtgtgtgt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108401884 16 - 171882078 gtgtgt--------------atatatatac
i macFas5.chr7              I 33 I 10
e aotNan1.NW_018505940v1     40629414 60 +  42888418 I
e cebCap1.NW_016107610v1       606828 40 -   2910086 I
e colAng1.NW_012117110v1        29871 72 -   1784207 I
e manLeu1.NW_012106908v1         6220 75 -   1397330 I
e chlSab2.chr29              21091034 53 -  24206276 I
e cerAty1.NW_012002657v1        10503 73 -   1987038 I
e macNem1.NW_012011945v1        12294 63 -   2311642 I
e rheMac8.chr7               60875136 65 + 169600520 I
e saiBol1.JH378108           50463436 24 +  54856640 I

a score=14010.000000
s hg38.chr15_KI270850v1_alt    324204 4 +    430880 atat
s panTro5.chr15              63477620 4 +  83230942 atat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80435012 4 +  99763055 atat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        34873 4 -   1709092 ATAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17186529 4 - 121039945 gtgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60875201 4 + 169600520 atac
i rheMac8.chr7              I 65 C 0
s macFas5.chr7              108401910 4 - 171882078 atac
i macFas5.chr7              I 10 C 0
s macNem1.NW_012011945v1        12357 4 -   2311642 atac
i macNem1.NW_012011945v1    I 63 C 0
s cerAty1.NW_012002657v1        10576 4 -   1987038 atac
i cerAty1.NW_012002657v1    I 73 C 0
s manLeu1.NW_012106908v1         6295 4 -   1397330 atac
i manLeu1.NW_012106908v1    I 75 C 0
s colAng1.NW_012117110v1        29943 4 -   1784207 atat
i colAng1.NW_012117110v1    I 72 C 0
e aotNan1.NW_018505940v1     40629414 60 +  42888418 I
e cebCap1.NW_016107610v1       606828 40 -   2910086 I
e chlSab2.chr29              21091034 53 -  24206276 I
e saiBol1.JH378108           50463436 24 +  54856640 I

a score=2528610.000000
s hg38.chr15_KI270850v1_alt    324208 478 +    430880 atatataaagaatatatggcctggtgcagtggctcacacctataatcccagcactttgggaggctgatgcaggtggatcacctgaggtcgggagttcaagaccagcctgaccaacatggagaaaccct--ctctactaataatacaaaattagccaggcgtggtggtgcatgcctgtaatcccagctacttgggaggctgagacaggagaatcacctgaacctggaaggtggaggttgcagtgagccaagatcctgccattgcactccagcctgggccacaagagcgaaactctgtctc-aaaaaa--gaaaaaaaaaattagctttgtgtggcggtgagcgtctgtaatcccagctactcaggaggctgaggcaggacaatcacttgaacttgggagatggaggttgcagtgagccaagattgtgccactgcactccagcctgggtgacagagtgagacttcatc---------tcCCCCCC-CGcaaaaaa
s panTro5.chr15              63477624 477 +  83230942 atatataAAGAATATATggcctggtgcagtggctcacacctataatcccagcactt-gggaggctgatgcaggtggatcacctgaggtcgggagttcaagaccagcctgaccaacatggagaaaccctgtctctactaataatacaaaatcagccaggcgtggtggtgcatgcctgtaatcccagctacttgggaggctgagacaggagaatcacctgaacctggaaggtggaggttgcagtgagccaagatcgtgccattgcactccagcctgggccacaagagcgaaactctgtctc-aaaaaa--gaaaaaaaaaattagctttgtgtggcggtgagcgtctgtaatcccagctactcgggaggctgaggcaggacaatcacttgaacttgggagatggaggttgcagtgagccaagattgtgccactgcactccagcctgggtgacagagtgagacttcatc---------tcCCCCC---ACCAAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80435016 471 +  99763055 atatataaagaatatatggcctggtgcagtggctcacacctataatcccagcactt-gggagggtgatgcaggtggatcacctgaggtcgggagttcaagaccagcctgaccaacatggagaaaccctgtctctactaataatacaaaatcagccaggcgtggtggtacatgcctgtaatcccagctacttgggaggctgagacaggagaatcacctgaacctggaaggtggaggttgcagtgagccaagatcgtgccattgcactccagcctgggccacaagagcgaaactctgtcct-ca-------aaagaaaaaattagctttgtgtggcggtgagcgtctgtaatcccagctactcgggaggctgaggcaggacaatcacttgaacttgggagatggaggttgcagtgagccaagattgtgccactgcactccagcctgggtgacagagtgagacttcatc---------tcCCCCC----CCCAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        34877 473 -   1709092 ACATATGG-------ATggcctggtgcagtggctcacacctataatcccagcactttgggaggctgatgcaggtggatcacctgaggtcgggagttcaagaccagcctgaccaacatggagaaaccctgtctctactaatactactaaattagccaggcgtggtggtgcatgcctgtaatcccagctacttgggaggctgagacaggagaatcacctgaacctggaaggtggaggttgcagtgagccaagatcgtgccattgcactccagcctgggccacaagagcgaaactctgtctc-aaaaaaagaaaaaaaaaaattagctttgtgtggcggtgagcgtctgtaatcccagctactcgggaggctgaggcaggacaatcacttgaacttgggagatggaggttgcagtgagccaagattgtgccactgcactccagcctgggtgacagagtgagacttcatc---------tcccccc---caaaaaag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17186533 481 - 121039945 gtgtgtAAAGAATATATggcctggcacagtggctcacacctataatcccagcactttgggaggctgatgcaggtggatcacctgaggtcaggagttcaagaccagcctgaccaacatggagaaaccctgtctctaccaataatacaaaattagccaggcgtggtggtgcatgcctgtaatcccagctacttgggaggctgagacaggagaatcgcctgaacctgggaggtggaggttgcagggacccaagatcgcgccattgcactccagcctggtccacgagagcgaaactctgtctc-aaaaaa-gaaaaaaaaaaattagctttgtgtggcggtgagcgcctgtaatcccagcaactcgggaggctgaggcaggagaatcacctgaacttgggagatggaggttgcagtgagccaagattgtgccactgcactccagcctgggtgacagagtgagactccatc---------tcccccca-gaaaaaaag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60875205 481 + 169600520 atatacaaagaatatatggcctggcgcggtggctcacgcctataatcccagcactttgggaggccgatgcaggtgaatcacctgaggtagggagttcaagaacagcctgaccaacatggagaaaccctgtctctaccaataatacaaaattagccgggcgtggtgg---gcacctgtaatcccagctactcgggaggctgagacaggagaatcacctgaacctgggaagtggaggttgcagtgagccaagatcacaccattgcactccagcctggtccacaagagcagaactccgtctc-----aa-aaaaaaaaaaaaaTAGCTTTTTgtggtggtgagcgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaactagggagttggaggttgcagtgagacaagatcgtgccactgcactccagcctgggtgacagagtgagactctatctACCGC---TCCACCCCCCAAAAAAAg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108401914 481 - 171882078 atatacaaagaatatatggcctggcgcggtggctcacgcctataatcccagcactttgggaggccgatgcaggtgaatcacctgaggtagggagttcaagaacagcctgaccaacatggggaaaccctgtctctaccaataatacaaaattagccgggcgtggtgg---gcacctgtaatcccagctactcgggaggctgagacatgagaatcacctgaacctgggaagtggaggttgcagtgagccaagatcacaccattgcactccagcctggtccacaagagcagaactccgtctc-----aa-aaaaaaaaaaaaaTAGCTTTgtgtggtggtgagcgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaactagggagttggaggttgcagtgagacaagatcgtgccactgcactccagcctgggtgacagagtgagactctatctACCGC---TCCACCCCCcaaaaaaag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        12361 486 -   2311642 atatacaaagaatatatggcctggcgcggcagctcacgcctataatcccagcactttgggaggccgatgcaggtgaatcacctgaggaagggagttcaagaacagcctgaccaacatggagaaaccctgtctctaccaataatacaaaattagccgggcgtggtgg---gcacctgtaatcccagctactcgggaggctgagacaggagaatcacctgaacctgggaagtggaggttgcagtgagccaagatcacaccattgcactccagcctggtccacaagagcagaactccgtctcaaaaaaa-aaaaaaaaaaaaaTAGCTTTgtgtggtggtgagcgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaactagggagttgaaggttgcagtgagacaagatcgtgccactgcactccagcctgggtgacagagtgagactctatctACTGC---TCCACCCCCCAAAAAAAg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        10580 480 -   1987038 atatacaaagaatatatggcctggcgcggtggctcaagcctataatcccagcactttgggaggccgatgcaggtgaatcacctgaggtagggagttcaagaacagcctgaccaacatggagaaaccctgtctctaccaataatacaaaattagccgggcgtggtgg---gcacctgtaatcccagctactcgggaggctgagacaggagaatcacctgaacctgggaagtggaggttgcagtgagccaagatcacaccattgcactccagcctggtccacaagagcagaactctgtctc----aaa-aaaaaaaaaaaaaaaGCTTTgtgtggtggtgagcgcctgtaatcccagctacttgggagactgaggcaggagaatcacttgaactagggagttggaggttgcagtgagacaagatcgtgccactgcactccagcctgggtgacagagtgaga--ctATCTACCGC---TCCACCCCCcaaaaaaag
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21091087 469 -  24206276 atatacaaagaatataTggcctggcgcagtggctcacgcctataatcccagcactttgggaggccgatgcaggtgaatcacctgagttagggagttcaagaacagcctgaccaacatggagaaaccctgtctctaccaataatacaaaattagccgggcgtggtgg---gcacctgtaatcccagctactcggggggctgaggcaggagaatcacctgaacctgggaagtggaggttgcagtaagccaagatcacaccattgcactccagcctggtccacaagagcagaactccgtctc----------aaaaaaaaaattagctttgtgtggtggtgagcgcctgtaatcccagctactcgggagactgaggcaggagaatcacttgaactag------ggaggctgcagtgggacaagatcgtgccactgcactccagcctgggtg--agagtgagactctatctACCGC---TCCACCCCCcaaaaaaag
i chlSab2.chr29             I 53 C 0
s manLeu1.NW_012106908v1         6299 483 -   1397330 atatacaaagaatatatggcctggcgcggtggctcacgcctataatcccagcactttgggaggccgatgcaggtgaatcacctgaggta-ggagttcaagaacagcctgaccaacatggagaaaccctgtctctaccaataatacaaaattagccgggcgtggtgg---gcacctgtaatcccagctactcgggaggctgagacaggagaatcacctgaacctgggaagtggaggttgcagtgagccaagatcacaccattgcactccagcctggtccacaagagcagaactccgtctc-aaaaaa-aaaaaaaaaaaaaTAGCTTTgtgtggtggtgagcgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaactagggagttggaggttgcagtgagacaagatcgtgccactgcactccagcctgggtgacagagtgagactctatctACCGC---TCCACCCCGc-aaaaaag
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        29947 485 -   1784207 acatacaaagaatatatggcctggcgcggtggctcacgcctataatcccagcactttaggaggccgatgcaggtggatcacctgaggtagggagttcaagaacagtctgaccaacatggagaaaccctgtctctaccaatactacaaaattagccgggcatggtgg---gcacctgtaatcccagctactcgggaggcttagacaggagaatcacctgaacctgggaagtggaggttgcagtgagccaagatcacaccattgcactccagcctggtccacaag---agaactccgtctc-aaaaaa-aaaaaaaaaaaattagctttgtgtggtggtgagtgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaactagggagttggaggttgccgtgagccaagatcgtgccactgcactccagcctgggtgacagagtgagactctatctACCGCGTGCCCCCCCCCcaaaaaaag
i colAng1.NW_012117110v1    C 0 C 0
e aotNan1.NW_018505940v1     40629414  60 +  42888418 I
e cebCap1.NW_016107610v1       606828  40 -   2910086 I
e saiBol1.JH378108           50463436  24 +  54856640 I

a score=203607.000000
s hg38.chr15_KI270850v1_alt    324686 27 +    430880 ataaagccattgaggcaaaatgtgaac
s panTro5.chr15              63478101 27 +  83230942 ataaagccattgaggcaaaatgtgaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80435487 27 +  99763055 ataaagccattgaggcaaaatgtgaac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        35350 26 -   1709092 ataaaGCCATTGAGG-aaaatgtgaac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17187014 27 - 121039945 ataaaGCcattgaggcaaaatgtgaac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60875686 27 + 169600520 ataaagccattgaagcaaaatatgaac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108402395 27 - 171882078 ataaagccattgaagcaaaatatgaac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        12847 27 -   2311642 ataaagccattgaagcaaaatatgaac
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        11060 27 -   1987038 ataaagccattgaagcaaaatatgaac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21091556 27 -  24206276 ataaagccattgaagcaaaatatgaac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         6782 27 -   1397330 ataaagccattgaagcaaaatatgaac
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        30432 27 -   1784207 ataaagccattgaagcaaaatatgaac
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50463460 27 +  54856640 ataaagcaattggggcaaaatgtgaac
i saiBol1.JH378108          I 24 C 0
s cebCap1.NW_016107610v1       606868 27 -   2910086 ataaagcaattggggcaaaatgtgaac
i cebCap1.NW_016107610v1    I 40 I 3
e aotNan1.NW_018505940v1     40629414 60 +  42888418 I

a score=2187371.000000
s hg38.chr15_KI270850v1_alt    324713 271 +    430880 tggtaaacctgggtgttctttgtactattcttgcaacttctctgtaagtttg-----------aaattatacaaaaattaagttacaaaaCACATTAAAAATGTCTGCTGTATTTATCTGCTTGACAGAAATAGATATGTAAGAATCACTTTAAGGCTAGAGCTTTCCCACTTGCTGGCTGC-tttttttttggagacagggtcacacttcgtcgcctagattgtagtgc-agtggcatgatctcggctcatcgcaacctccacctccaaggcttaggcagccc
s panTro5.chr15              63478128 271 +  83230942 tggtaaacctgggtgttctttgtactattcttgcaacttctctgtaagtttg-----------aaattatacaaaaattaaGTTACAAAACACATTAAAAATGTCTGCTGTATTTATCTGCTTGACAGAAATAGATATGCAAGAATTACTTTAAGGCTAGAGCTTTCCCACTTGCTGGCTGC-tttttgtttggagacagggtctcacttcgtcgcctagattgtagtgc-agtggcatgatctcggctcatcgcaacctccacctccaaggcttaggcagccc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80435514 271 +  99763055 tggtaaacctgggtgttctttgtactattcttgcaacttctctgtaagtttg-----------aaattatacaaaaattaaGTTACAAAACACATTAAAAATGTCTGCTGTATTTATCTGCTTGACAGAAATAGATATGCAAGAATTACTTTAAGGCTAGAGCTTTCCCACTTGCTGGCTGC-tttttgtttggagacagggtctcacttcgtcgcctagattgtagtgc-agtggcatgatctcggctcatcgcaacctccacctccaaggcttaggcagccc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        35376 268 -   1709092 tggtaaacctgggtgttctttgtactattcttgcaacttctctttaagtttg-----------aaattatacaaaatT---GTTACAAAACACATTAAAAATGTCTGCTGTATTTATCTGCTTGACAGAAATAGATATGCAAGAATCACTTTAAGGCTAGAGCTTTCCCACTTGCTGGCTGC-tttttttttggagacagggtctcacttcgtcgcctagattgcagtgc-agtggcatgatctcagctcatcgcaacctccacctccaaggcttaggcagccc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17187041 272 - 121039945 tggtaaacctgggtgttctttgtactattcttgcaacttctctgtaagtttg-----------agattatacaaaaattaagttacaaaaCACATTTAAAATATCTGCTGTATTTATCTGCTTGACAGAAATAGATACGCAAGAATCACTTTAAGGCTAGAGCTTTGCCACTTTCTCACTGCttttttttttgaagacagggtctcactttgtcgcctagattgtagtgc-agtggcatgatctcggctcatcacaacctccacctccaaggcttaggcagccc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60875713 270 + 169600520 tagtaaacttgggtgttctttgtactattcttccaacttctctgtaagtttg-----------aaattatacaaaaattaagttacaaaaCACATTTAAAATGTTTGCTGTATTTATCTGCTTGACAGAAGCAGATATGCAAGAATCACTTTAAGGCTAGAACTTTGCCACTTCCTGGCTGC--tttttttttgagacagggtctcacttcgtcgcctagattgtagtgc-agtggtgtgatctcggctcattgcaacttccacctccaaggcttaggcggccc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108402422 270 - 171882078 tagtaaacttgggtgttctttgtactattcttccaacttctctgtaagtttg-----------aaattatacaaaaattaagttacaaaaCACATTTAAAATGTTTGCCGTATTTATCTGCTTGACAGAAGCAGATATGCAAGAATCACTTTAAGGCTAGAACTTTGCCACTTCCTGGCTGC--tttttttttgagacagggtctcacttcgtcgcctagattgtagtgc-agtggtgtgatctcggctcattgcaacttccacctccaaggcttaggcggccc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        12874 270 -   2311642 tagtaaacttgggtgttctttgtactattcttccaacttctctgtaagtttg-----------aaattatacaaaaattaagttacaaaaCACATTTAAAATGTTTGCTGTATTTATCTGCTTGACAGAAGCAGATATGCAAGAATCACTTTAAGGCTAGAACTTTGCCACTTCCTGGCTGC--tttttttttgagacagggtctcacttcgtcgcctagattgtagtgc-agtggcgtgatctcggctcattgcaacttccacctccaaggcttaggcggccc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        11087 271 -   1987038 tagtaaacttgggtgttctttgtactattcttccaacttctct-taagtttg-----------aaattatacaaaaattaagttacaaaaCACATTTAAAATGTTTGCTGTATTTATCTGCTTGACAGAAGCAGATATGCAAGAATCACTTTAAGGCTAGAACTTTGCCACTTCCTGGCTGCtttttttttttgagacagggtctcacttcgttgcctagattgtagtgc-agtggcgtgatctcggctcattgcaacttccacctccaaggcttaggtggccc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21091583 282 -  24206276 tagtaaacttgggtgttctttgtactattcttcaaacttctctgtaagtttgaaattatacaaaaattatacaaaaattaaGTTACAAAACACATTTAAAATGTTTGCTGTATTTATCTGCTTGACAGAAGCAGATATGCAAGAATCACTTTAAGGCTAGAACTTTGCCACTTCCTGGCTGC-ttttttttttgagacagggtctcacttcgtcgcctagattgtagtgc-agtggcgtgatctcggctcactgcaactttcagctccaaggcttaggcggccc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         6809 271 -   1397330 tagtaaacttgggtgttctttgtactattcttccaacttctctgtaagtttg-----------aaattacacaaaaattaagttacaaaaCACATTTAAAATGTTTGCTGTATTTATCTGCTTGACAGAAGCAGATATGCAAGAATCACTTTAAGGCTAGAACTTTGCCACTTCCTGGCTGC-ttttttttttgagacagggtctcaattcgtcgcctagattgtagtgc-agtggcgtgatctcggctcattgcaacttccacctccaaggcttaggcggccc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        30459 272 -   1784207 tggtaaacttgggtgttctttgtactattcttccaacttctctgtaagtttg-----------aaattatacaaaaattaaGTAACAAAACACATTTAAAATGTTTGCTGTATTTATCTGCTTGACAGAAGCAGATATGCAAGAAACACTTTAAGGCTAGAACTTTGCCACTTCCTGGCTGCtttttttttttgagacagggtctcacttcgtcgcctagattgtagtgc-agtggcatgatctcggctcattgcaacttccacctccaagacttaggcggccc
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50463487 257 +  54856640 tggtaaacctgggtattctttgtactattcttgcaacttctct----gcttg-----------aaattatACACATATTAAGTTGCAAAACACATTAAAAATGTCTGC----TTTATCTGCTTGACCGAAGTAGATATGTAAGAATCACTCCAAGGCTACAGCTTTGCCCCTTCCTGGCTGt--------cttgagacaggttctcactttgtcacctagattgtattggaagtagcatgatctcagctcattgcaacctccacctccaaagcttaggccacct
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       606898 255 -   2910086 tggtaaacctgggtattctttgtactattcttgcaacttctct----gcctg-----------aaattatacaaatattaagttataaaaTACATTACAAATGTCTGC----TTTATCTGCTTGACAGAAGTAGATACGCAAGAATCACTCTAAGGCTAGAGCTTTG-CCCTTCCTGGCTGt--------cttgagccagg-tctcactttgtcacctagattgtagtgcaagtggcatgatcccagctcactgcagcctccacctccaaagcttaggcccccc
i cebCap1.NW_016107610v1    I 3 C 0
s aotNan1.NW_018505940v1     40629474 257 +  42888418 tggtaaacctgggtattctttgtactattcttgaaacttctct----gcttg-----------aaattatACAAATATTAAGTTACAAAACATATTAAAAATGTCTGC----TTTATCTGCTTGACAGAAGTAGATATGCAAGAATCACTCTAAGGCTACAGCTTTGCCCCTTCCTGGCTGC--------Cttgagacaggttctcactttgtcacctagattgtagtacaagtagcatgatctcggctcattgcaacctccacctccaaagcttaggcccccc
i aotNan1.NW_018505940v1    I 60 I 12

a score=47299.000000
s hg38.chr15_KI270850v1_alt    324984 9 +    430880 tctgaccgc
s panTro5.chr15              63478399 9 +  83230942 tccgaccgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80435785 9 +  99763055 tccgaccgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        35644 9 -   1709092 tccgaccgc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17187313 9 - 121039945 tccgaccgc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60875983 9 + 169600520 tccaacctc
i rheMac8.chr7              C 0 I 6
s macFas5.chr7              108402692 9 - 171882078 tccaacctc
i macFas5.chr7              C 0 I 6
s macNem1.NW_012011945v1        13144 9 -   2311642 tccaacctc
i macNem1.NW_012011945v1    C 0 I 6
s cerAty1.NW_012002657v1        11358 9 -   1987038 cccaacctc
i cerAty1.NW_012002657v1    C 0 I 6
s chlSab2.chr29              21091865 9 -  24206276 tccaacctc
i chlSab2.chr29             C 0 I 6
s manLeu1.NW_012106908v1         7080 9 -   1397330 tccaacctc
i manLeu1.NW_012106908v1    C 0 I 6
s colAng1.NW_012117110v1        30731 9 -   1784207 tccaacctc
i colAng1.NW_012117110v1    C 0 I 10
s saiBol1.JH378108           50463744 9 +  54856640 gccgtccac
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       607153 9 -   2910086 gccgcctgc
i cebCap1.NW_016107610v1    C 0 C 0
e aotNan1.NW_018505940v1     40629731 12 +  42888418 I

a score=-2040.000000
s hg38.chr15_KI270850v1_alt    324993 5 +    430880 ctaag
s panTro5.chr15              63478408 5 +  83230942 ctaag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80435794 5 +  99763055 ctaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        35653 5 -   1709092 ctaag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17187322 5 - 121039945 ctaag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60875998 4 + 169600520 ccaa-
i rheMac8.chr7              I 6 C 0
s macFas5.chr7              108402707 4 - 171882078 ccaa-
i macFas5.chr7              I 6 C 0
s macNem1.NW_012011945v1        13159 4 -   2311642 ccaa-
i macNem1.NW_012011945v1    I 6 C 0
s cerAty1.NW_012002657v1        11373 4 -   1987038 ccaa-
i cerAty1.NW_012002657v1    I 6 C 0
s chlSab2.chr29              21091880 4 -  24206276 ccaa-
i chlSab2.chr29             I 6 C 0
s manLeu1.NW_012106908v1         7095 4 -   1397330 ccaa-
i manLeu1.NW_012106908v1    I 6 C 0
s saiBol1.JH378108           50463753 2 +  54856640 cc---
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       607162 2 -   2910086 cc---
i cebCap1.NW_016107610v1    C 0 C 0
e aotNan1.NW_018505940v1     40629731 12 +  42888418 I
e colAng1.NW_012117110v1        30740 10 -   1784207 I

a score=206.000000
s hg38.chr15_KI270850v1_alt    324998 5 +    430880 catgt
s panTro5.chr15              63478413 5 +  83230942 catgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80435799 5 +  99763055 catgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        35658 3 -   1709092 ca--t
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17187327 5 - 121039945 cacat
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378108           50463755 5 +  54856640 cccga
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       607164 5 -   2910086 cccga
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40629743 5 +  42888418 cctga
i aotNan1.NW_018505940v1    I 12 C 0
e colAng1.NW_012117110v1        30740 10 -   1784207 I
e manLeu1.NW_012106908v1         7099 0 -   1397330 C
e chlSab2.chr29              21091884 0 -  24206276 C
e cerAty1.NW_012002657v1        11377 0 -   1987038 C
e macNem1.NW_012011945v1        13163 0 -   2311642 C
e macFas5.chr7              108402711 0 - 171882078 C
e rheMac8.chr7               60876002 0 + 169600520 C

a score=236849.000000
s hg38.chr15_KI270850v1_alt    325003 27 +    430880 gtagctggactacacatgcacatcacc
s panTro5.chr15              63478418 27 +  83230942 gtagctggactacacatgcacatcacc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80435804 27 +  99763055 gtagctggactacacatgcacatcacc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        35661 27 -   1709092 gtagctgcactacacatgcacatcacc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17187332 27 - 121039945 gtagctggactacacatgcacatcacc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60876002 27 + 169600520 gtagctggactacacatgcatatcacc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108402711 27 - 171882078 gtagctggactacacatgcatatcacc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        13163 27 -   2311642 gtagctggactacacatgcacatcacc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        11377 27 -   1987038 gtagctggactacacatgcacatcacc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21091884 27 -  24206276 gtagctggactacacatgcacatcacc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7099 27 -   1397330 gtagctggactacacatgcacatcacc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        30750 27 -   1784207 gtagctggactacacatgcacatcacc
i colAng1.NW_012117110v1    I 10 C 0
s saiBol1.JH378108           50463760 27 +  54856640 gtagctggactacacttgtacaccacc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       607169 27 -   2910086 gtagctggactacacttgtgcaccacc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40629748 27 +  42888418 gtagctggacttctcttgtgcactacc
i aotNan1.NW_018505940v1    C 0 C 0

a score=203045.000000
s hg38.chr15_KI270850v1_alt    325030 22 +    430880 atgccca-gcttattttctacct
s panTro5.chr15              63478445 22 +  83230942 atgccca-gcttattttctacct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80435831 22 +  99763055 atgccca-gcttattttctacct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        35688 22 -   1709092 atgccca-gcttattttctacct
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17187359 22 - 121039945 atgacta-gcttattttctacct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60876029 22 + 169600520 atgccca-gcttcttttctacct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108402738 22 - 171882078 atgccca-gcttcttttctacct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        13190 22 -   2311642 atgccca-gcttattttctacct
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        11404 22 -   1987038 atgccca-gcttattttctacct
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21091911 22 -  24206276 atgccca-gcttattttctacct
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7126 22 -   1397330 atgccca-gcttattttctacct
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        30777 22 -   1784207 atgccca-gtttattttctacct
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22227561 23 + 158406734 ATGCCCAGGGTAATTGTTTATTT
i calJac3.chr6              N 0 I 12
s saiBol1.JH378108           50463787 22 +  54856640 atgccca-gctaattttctaccc
i saiBol1.JH378108          C 0 I 11
s cebCap1.NW_016107610v1       607196 22 -   2910086 atgccca-gctaattttctaccc
i cebCap1.NW_016107610v1    C 0 I 10
s aotNan1.NW_018505940v1     40629775 22 +  42888418 atgccca-gctaattttctactt
i aotNan1.NW_018505940v1    C 0 I 29

a score=116039.000000
s hg38.chr15_KI270850v1_alt    325052 25 +    430880 ttttagt--agagaggagg--tcttggta--
s panTro5.chr15              63478467 25 +  83230942 ttttagt--agagaggagg--tcttggta--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80435853 25 +  99763055 ttttagt--agagaggagg--tcttggta--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        35710 25 -   1709092 ttttagt--agagaggagg--tcttggta--
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17187381 24 - 121039945 ttttagt--agaga-gaag--tcttgcta--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60876051 23 + 169600520 tttttgt--aga--ggagg--tcttgcta--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108402760 23 - 171882078 tttttgt--aga--ggagg--tcttgcta--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        13212 23 -   2311642 tttttgt--aga--ggagg--tcttgcta--
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        11426 25 -   1987038 tttttgtagaga--ggagg--tcttgcta--
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21091933 25 -  24206276 ttttcgt--agagaggagg--tcttgcta--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7148 22 -   1397330 tttttgt--aga---gagg--tcttgcta--
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        30799 25 -   1784207 ttttcgt--agagaggagg--tcttgcta--
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22227596 26 + 158406734 ttttgga--aga---aaaggttctggctata
i calJac3.chr6              I 12 C 0
s saiBol1.JH378108           50463820 24 +  54856640 cttcggt--aga---aaag--tcttgctatg
i saiBol1.JH378108          I 11 C 0
s cebCap1.NW_016107610v1       607228 24 -   2910086 ttttggt--aga---aagg--tcttgctatg
i cebCap1.NW_016107610v1    I 10 C 0
e aotNan1.NW_018505940v1     40629797 29 +  42888418 I

a score=830529.000000
s hg38.chr15_KI270850v1_alt    325077 104 +    430880 ttgcccaggctggtctccaaccctcagg-ctcaag-caatccctcccacctca--gtctcctgaagtactgggattacaggtgtgagcca-ccatgcc-tgCCTG-TTCTC
s panTro5.chr15              63478492 104 +  83230942 ttgcccaggctggtctccaactctcagg-ctcaag-caatccctcccacctca--gtctcctgaagtactgggattacaggtgtgagcca-ccatgcc-tgCCTG-TTCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80435878 104 +  99763055 ttgcccaggctggtctccaactctcagg-ctcaag-caatccctcccacctca--gtctcctgaagtactgggattacaggtgtgagcca-ccatgcc-tgCCTG-TTCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        35735 104 -   1709092 ttgcccaggctggtctccaactctcagg-ctcaag-caatccctcccacctca--gtctcctgaagtactgagattacaggtgtgagccg-ccatgcc-tgCCTG-TTCTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17187405 103 - 121039945 ttgcccaggctggtctccaactctcaag-ctcaag-caatccctcccgcctca--gtctcctg-agtactgggattacaggtgtgagcca-catgccc-tgccTG-TTCTC
i nomLeu3.chr6              C 0 M 100
s rheMac8.chr7               60876074 105 + 169600520 ttgcccaggctggtctccaactctcagg-ctcaag-caatccttcccacctca--gtctcctcaagtactgggattacaggtgtgagcca-ccatgccctgccCG-TTCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108402783 105 - 171882078 ttgcccaggctggtctccaactctcagg-ctcaag-caatccttcccacctca--gtctcctcaagtactgggattacaggtgtgagcca-ccatgccctgccCG-TTCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        13235 103 -   2311642 ttgcccaggctggtctccaa--ctcagg-ctcaag-caatccttcccacctca--gtctcctcaagtactgggattacaggtgtgagcca-ccatgccctgccCG-TTCTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        11451 105 -   1987038 ttgcccaggctggtctccaactctcagg-ctcaag-caatccttcccacctca--gtctcctcaagtactgggattacaggtgtgagcca-ccatgccttgccCG-TTCTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21091958 102 -  24206276 ttgcccaggctggtctccaactctcagg-ctcaag-caatccttcccacctca--gtctc---aagtactgggattacaggtgtgagcca-ccatgccctgccCG-CTCTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7170 105 -   1397330 ttgcccaggctggtctccaactctcagg-atcaag-caatccttcccacctca--gtctcctgaagtactgggattacaggtgtgagcca-ccatgcccTGTCCG-TTCTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        30824  83 -   1784207 ttgcccaggctggtctccaaccctcagg-ctcaag-caatccttcaaacctca--gtctc---aaatactgg------------gaGCCA-C-------TGCCCG-TTCTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22227622 109 + 158406734 tcccccaagctggcttctaa--ctcaaggctcaagccaatccccctcttcccagttttccttgaagtgctgggattacatgtgggagccacccatgccctgccCATTTATT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50463844  95 +  54856640 ttgcccaagctggcctccaa--ctcaag--------caatccctcccgccc----gtctcctgaagtgctgggattacaggtgtgagcca-ccgtgccctgccCG-TTATC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       607252 102 -   2910086 ttgcccaagctggcctccaa--ctcagg-ctcaag-caatccctccctccc----gtctcccgaagtgctgggattataggtgtgagccaccattgccctgccTG-TTATC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40629826 101 +  42888418 ttgcccaagctggcctccaa--ctcggg-ttcaag-caatccttcccgctc----gtctcctgaagtgctgggattacaggcgtgagcca-ccatgccctgccCG-TTATC
i aotNan1.NW_018505940v1    I 29 C 0

a score=450299.000000
s hg38.chr15_KI270850v1_alt    325181 57 +    430880 CTGGACATGCA---GCCAGCTAAGCTTGGCTCTGCAACAGCTCCTTGTCCCACTGGAGAA
s panTro5.chr15              63478596 57 +  83230942 CTGGACATGCA---GCCGGCTAAGCTTGGCTCTGCAACAGCTCCTTGTCCCACTGGAGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80435982 57 +  99763055 CTGGACATGCA---GCCGGCTAAGCTTGGCTCTGCAACAGCTCCTTGTCCCACTGGAGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        35839 57 -   1709092 TTGGACATGCA---TCCGGCTAAGCTTGGCTCTGCAACAGCTCCTTGTCCCACTGGAGAA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60876179 60 + 169600520 TTGGACACCCGTCCACCAGCTAAGCTTGGCTCTCCAACAGCTCCTTCTCCCACTGGAGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108402888 60 - 171882078 TTGGACACCCGTCCACCAGCTAAGCTTGGCTCTCCAACAGCTCCTCCTCCCACTGGAGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        13338 60 -   2311642 TTGGACACCCGTCCACCAGCTAAGCTTGGCTCTCCAACAGCTCCTTCTCCCACTGGAGAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        11556 60 -   1987038 TTGGACACCCGTCCACCAGCTAAGCTTGGCTCTCCAACAGCTCCTTCTCCCACTGGAGAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092060 60 -  24206276 TTGGACACCCATCCACCAGCTAAGCTTGGCTCTGCAACAGCTCCTTCTCCCACTGGAGAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7275 60 -   1397330 TTGGACACCCGTCCACCAGCTAAGCTTGGCTCTCCAACAGCTCCTTCTCCCACTGGAGAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        30907 60 -   1784207 TTGAACACCCATCCACCAGCTAAGCTTGGCTCTGCAACAGCTCCTTCTCCCACTGGAGAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22227731 57 + 158406734 TGGGACACATG---CCCAGCTAAGCTTGGCCTTACAACACCTCCTTCTCCCACTGGAGAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50463939 57 +  54856640 TTGGACACATG---TCCAGCTAAGCTTGGCCTTGCAACAGCTCCTTCTCTCACTGGAGAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       607354 57 -   2910086 TTGGCCACATG---TCCAGCTAAGCTTGGCCTTGCAACAGCTCCTTCTCCCACTGGAGAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40629927 57 +  42888418 TTGGACACATG---TCCAGCTAAGCTTGGCCTTGCAACAGCTCCTTCTCCCACTGGAGAA
i aotNan1.NW_018505940v1    C 0 I 89
e nomLeu3.chr6               17187508 100 - 121039945 M

a score=10292.000000
s hg38.chr15_KI270850v1_alt    325238 2 +    430880 AA
s panTro5.chr15              63478653 2 +  83230942 AA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436039 2 +  99763055 AA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        35896 2 -   1709092 AC
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60876239 2 + 169600520 AC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108402948 2 - 171882078 AC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        13398 2 -   2311642 AC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        11616 2 -   1987038 AC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092120 2 -  24206276 AC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7335 2 -   1397330 AC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        30967 2 -   1784207 AC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22227788 2 + 158406734 AC
i calJac3.chr6              C 0 I 2
s saiBol1.JH378108           50463996 2 +  54856640 AC
i saiBol1.JH378108          C 0 I 2
s cebCap1.NW_016107610v1       607411 2 -   2910086 AC
i cebCap1.NW_016107610v1    C 0 I 2
e aotNan1.NW_018505940v1     40629984 89 +  42888418 I
e nomLeu3.chr6               17187508 100 - 121039945 M

a score=433892.000000
s hg38.chr15_KI270850v1_alt    325240  77 +    430880 A--GAGCCCACAGCTTTCCTCATATGCAAGGGCATG-AACCAACCAAGTGCAGCCCAGCTCCTGTGAGAC-----------------------------------------------ACACACAC---------------------A--C
s panTro5.chr15              63478655  77 +  83230942 A--GAGCCCACAGCTTTCCTCATATGCAAGGGCATG-AACCAACCAAGTGCAGCCCAGCTCCTGTGAGAC-----------------------------------------------ACACACAC---------------------A--C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436041  77 +  99763055 A--GAGCCCACAGCTTTCCTCATATGCAAGGGCATG-AACCAACCAAGTGCAGCCCAGCTCCTGTGAGAC-----------------------------------------------ACACACAC---------------------A--C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        35898  76 -   1709092 A--GAGCCCACAGCTTTCCTCATACGCAAGGGCATG-AACCAACCAAGTGCAGCCCAGCTCCTGTGAGAC-----------------------------------------------ACAC-CAC---------------------A--C
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60876241 125 + 169600520 ACGGAGCCACCAACTTTCCTCATACGCAAGGGCATG-AACCAACCAAGTGCAGCCCAGCTCCTGAGACGCGCGCGcacacacacgcacacacacacacacacacacacacacacac-acacacac---------------------a--c
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108402950 125 - 171882078 ACGGAGCCACCAACTTTCCTCATACGCAAGGGCATG-AACCAACCAAGTGCAGCCCAGCTCCTGAGACGcacgcgcacacacacgcacacacacacacacacacacacacacacac-acacacac---------------------a--c
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        13400 146 -   2311642 ACGGAGCCACCAACTTTCCTCATACGCAAGGGCATG-AACCAACCAAGTGCAGCCCAGCTCCTGAGacacacacacacacacacacacacacacacGCAGTTA-ACTGACAGCCTCAACAGAGATcacacacacacacacacacaca--c
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        11618  81 -   1987038 ACGGAGCCACCAACTTTCCTCATACGCAAGGGCATG-AACCAACCAAGTGCAGCCCAGCTCCTGAGACGCGC---------------------------------------------ACACACAC---------------------A--C
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092122  85 -  24206276 ACGGAGCCCCCAATTTTCCTCATACGCAAGGGCATG-AACCAACCAAGTGCAGTCCAGCTCCTGAGACGCGCACAC-----------------------------------------ACACACAC---------------------A--C
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7337  73 -   1397330 ACAGAGCCACCAACTTTCCTCATACACAAGGGCATG-AACCAACCAAGTGCAGCCCAGCTCCTGAG-----------------------------------------------------ACACAC---------------------A--C
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        30969  95 -   1784207 ACAGAGCCCCCAACTTTCCTCACACTCAAGGGCATG-AACCAACCAAGTGCAGCCCAGCTCCTGAGacacacgcgcgcacacacac-------------------------------acaaatac---------------------a--c
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22227792  71 + 158406734 --GAAGCCCACAGTGTTCCTCATATCCAAGGGCATTGAACCAACCAAGGGCAGCCCAGCTTCTG-----------------------------------------------------ATGCACGC---------------------A---
i calJac3.chr6              I 2 C 0
s saiBol1.JH378108           50464000  80 +  54856640 --AAAGCCCACAACGTTCCTCATATCCAAGGGCATG-----AACCAAGGGCGGCCCAGCTTCTGTGACTCTCTCACAC---------------------------------------ACACACAC---------------------A---
i saiBol1.JH378108          I 2 I 117
s cebCap1.NW_016107610v1       607415  77 -   2910086 --GAAGCCCACAACATTCCTCATATCCAAGGGCATA-AACCAACCAAGGGCAGCCCAGCTTCTGTGacac-----------------------------------------------acacacac---------------------ac--
i cebCap1.NW_016107610v1    I 2 I 116
s aotNan1.NW_018505940v1     40630073  77 +  42888418 --aGAGCCCACAATGTTCCTCATATCCAAGGGCATG-AACCAACCAAGAGCAGCCCAGCTTCTGTGACAC-----------------------------------------------ACACACAC---------------------A-C-
i aotNan1.NW_018505940v1    I 89 I 183
e nomLeu3.chr6               17187508 100 - 121039945 M

a score=5500.000000
s hg38.chr15_KI270850v1_alt    325317 1 +    430880 G
s panTro5.chr15              63478732 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436118 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        35974 1 -   1709092 G
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60876366 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108403075 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        13546 1 -   2311642 g
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        11699 1 -   1987038 G
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092207 1 -  24206276 G
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7410 1 -   1397330 G
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        31064 1 -   1784207 g
i colAng1.NW_012117110v1    C 0 C 0
e aotNan1.NW_018505940v1     40630150 183 +  42888418 I
e calJac3.chr6               22227863 0 + 158406734 C
e cebCap1.NW_016107610v1       607492 116 -   2910086 I
e nomLeu3.chr6               17187508 100 - 121039945 M
e saiBol1.JH378108           50464080 117 +  54856640 I

a score=152453.000000
s hg38.chr15_KI270850v1_alt    325318 39 +    430880 TGGTTAACTGACAG---CGACAGAGAGCCTAAATAAAGCTCA
s panTro5.chr15              63478733 35 +  83230942 TGGTTAACTGACAG---CGACAGAGAGCCTAAA----GCTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436119 35 +  99763055 TGGTTAACTGACAG---CGACAGAGAGCCTAAA----GCTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        35975 35 -   1709092 TGGTTAACTAACAG---CGACAGAGAGCCTAAA----GCTCA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60876367 38 + 169600520 CAGTTAACTGACAGCCTCAACAGAGATCCTAAA----GCTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108403076 38 - 171882078 CAGTTAACTGACAGCCTCAACAGAGATCCTAAA----GCTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        13547 38 -   2311642 caGTTAACTGACAGCCTCAACAGAGATCCTAAA----GCTCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        11700 38 -   1987038 CAGTTAACTGACAGCCTCAACAGAGATCCTAAA----GCTCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092208 38 -  24206276 CAGTGAACTGACAGCCTCAACAGAGATCCTAAA----GCTCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7411 38 -   1397330 CAGTTAACTGACAGCCTCAACAGAGATCCTAAA----GCTCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        31065 38 -   1784207 caGTTAACTGACAACCTCGACAGAGATCCTAAA----GCTCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22227863 26 + 158406734 -GTTTAACTCACAGCCT-----------CCAGA----GTCCA
i calJac3.chr6              C 0 I 5
e aotNan1.NW_018505940v1     40630150 183 +  42888418 I
e cebCap1.NW_016107610v1       607492 116 -   2910086 I
e nomLeu3.chr6               17187508 100 - 121039945 M
e saiBol1.JH378108           50464080 117 +  54856640 I

a score=20055.000000
s hg38.chr15_KI270850v1_alt    325357 2 +    430880 GA
s panTro5.chr15              63478768 2 +  83230942 GA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436154 2 +  99763055 GA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        36010 2 -   1709092 GA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60876405 2 + 169600520 GA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108403114 2 - 171882078 GA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        13585 2 -   2311642 GA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        11738 2 -   1987038 GA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092246 2 -  24206276 GA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7449 2 -   1397330 GA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        31103 2 -   1784207 GA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22227894 2 + 158406734 GA
i calJac3.chr6              I 5 C 0
s saiBol1.JH378108           50464197 2 +  54856640 GA
i saiBol1.JH378108          I 117 C 0
s cebCap1.NW_016107610v1       607608 2 -   2910086 GA
i cebCap1.NW_016107610v1    I 116 C 0
s aotNan1.NW_018505940v1     40630333 2 +  42888418 GA
i aotNan1.NW_018505940v1    I 183 C 0
e nomLeu3.chr6               17187508 100 - 121039945 M

a score=438483.000000
s hg38.chr15_KI270850v1_alt    325359 48 +    430880 GTCCAGGGTAGTCTACCCAGGTTGCAGCTGGTGAGCTCTGCCTCCGGT
s panTro5.chr15              63478770 48 +  83230942 GTCCAGGGTAGTCTACCCAGGTTGCAGCTGGTGAGCTCTGCCTCCGGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436156 48 +  99763055 GTCCAGGGTAGTCTACCCAGGTTGCAGCTGGTGAGCTCTGCCTCCGGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        36012 48 -   1709092 GTCCAGGGTAGTCTACCCAGGTTGCAGCTGGTGAGCTCTGCCTCCGGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17187608 48 - 121039945 GTCCAGGGGAGTCTACCCAGGTTGCAGCTGGTGAGCTCTGCCTCCAGT
i nomLeu3.chr6              M 100 C 0
s rheMac8.chr7               60876407 47 + 169600520 GTCCAGGGCAGTCTACTCAGGCTGCAGCTGGTGAG-TCTGCCTCCAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108403116 47 - 171882078 GTCCAGGGCAGTCTACTCAGGCTGCAGCTGGTGAG-TCTGCCTCCAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        13587 47 -   2311642 GTCCAGGGCGGTCTACTCAGGCTGCAGCTGGTGAG-TCTGCCTCCAGT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        11740 47 -   1987038 GTCCAGGGCAGTCTACTCAGGCTGCAGCTGGTGAG-TCTGTCTCCAGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092248 47 -  24206276 GTCCAGGGCAGTCTACTCAGGCTGCAGCTGGTGAG-TCTGCCTCCAGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7451 47 -   1397330 GTCCAGGGCAGTCTACTCAGACTGCAGCTGGTGAG-TCTGTCTCCAGT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        31105 47 -   1784207 GTCCGGGGCAGTCTACTCAAGCTGCAGCTGGTGAG-TCTGCCTCCAGT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22227896 48 + 158406734 GTCCAGTGTAGTCTATACAGGCTGCAGTGGGTGAGCTCTGCCTCCGGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50464199 48 +  54856640 GTCCAGGGTAGTCTATACAGGCTGCAGCGGGTGAGCTCCGCCTCGGGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       607610 48 -   2910086 GTCCAGGGTAGTCTACACAGGCTGCAGCAGGTGAGCTCTGCCTCGGGT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40630335 48 +  42888418 GTCCAGGGTAGTCTATACAGGCTGCAGCGGGTGAGCTCTGCCTCAGGT
i aotNan1.NW_018505940v1    C 0 C 0

a score=132967.000000
s hg38.chr15_KI270850v1_alt    325407 15 +    430880 TAGGCTGAAGCATCC
s panTro5.chr15              63478818 15 +  83230942 TAGGCTGAAGCATCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436204 15 +  99763055 TAGGCTGAAGCATCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        36060 14 -   1709092 TAGGCTG-AGCATCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17187656 15 - 121039945 TAGGCTGAAGCATCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60876454 15 + 169600520 TAGGCTGAAGCATCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108403163 15 - 171882078 TAGGCTGAAGCATCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        13634 15 -   2311642 TAGGCTGAAGCATCC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        11787 15 -   1987038 TAGGCTGAAGCATCC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092295 15 -  24206276 TAGGCTGAAGCATCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7498 15 -   1397330 TAGGCTGAAGCATCC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        31152 15 -   1784207 TAGGCTGAAGCATCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22227944  3 + 158406734 TAG------------
i calJac3.chr6              C 0 I 2
s saiBol1.JH378108           50464247 15 +  54856640 TAGGCTGAAGTATCT
i saiBol1.JH378108          C 0 I 2
s cebCap1.NW_016107610v1       607658 13 -   2910086 TAGGCTGAAGCAT--
i cebCap1.NW_016107610v1    C 0 I 2
s aotNan1.NW_018505940v1     40630383 15 +  42888418 TAGGCTGAAGCATCC
i aotNan1.NW_018505940v1    C 0 I 129
s dasNov3.JH570731            1789289 15 +   3943991 TGGTCTGAAACATCC
i dasNov3.JH570731          N 0 C 0

a score=442388.000000
s hg38.chr15_KI270850v1_alt    325422 80 +    430880 CAG-TATCA---------ATCCTCC-CATACAcatttattc------acatttgttgagatctcctatgttctaggcattgggctcaacattg----gaca
s panTro5.chr15              63478833 80 +  83230942 CAC-TATCA---------ATCCTCC-CATACAcatttattc------acatttgttgagatctcctatattctaggcattgggctcaacattg----gaca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436219 80 +  99763055 CAG-TATCA---------ATCCTCC-CATACACATTTATTC------ACATTTGTTGAGATCTCCTATATTCTAGGCATTGGGCTCAACATTG----GACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        36074 79 -   1709092 CAG-TATCA---------ATCCTCC-CATACACATTTATTC------ACATTTGTTGAGATCTCCTATATTTTAGGCACTGGG-TCAACATTG----GACA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17187671 73 - 121039945 CAG-TATCG---------ATCTTCC-CATACACATTTATTC------ACATTTTTTGAGATCTCTTATAGTCTAGGCATTGGGCTCAACA-----------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60876469 79 + 169600520 CAG-TATCAT------CGGTTCTCC-----CAcatttattc------acatttgttgagatctcttatattccaggcactgggctccacactg----gaca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108403178 79 - 171882078 CAG-TATCAT------CGGTTCTCC-----CACATTTATTC------ACATTTGTTGAGATCTCTTATATTCCAGGCACTGGGCTCCACACTG----GACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        13649 79 -   2311642 CAG-TATCAT------CGGTTCTCC-----CAcatttattc------acatttgttgagatctcttatattccaggcactgggctccacactg----gaca
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        11802 79 -   1987038 CAG-TATCAT------CGGTTCTCC-----CAcatttattc------acatttgttgagatctcttatattccaggcactgggccccacactg----gaca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092310 79 -  24206276 CAG-TATCAT------TGGTTCTCC-----CATATTTATTC------ACATTTGTTGAGCTCTCTTATATTCCAGGCACTGGGCTCCACACTG----GACA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7513 69 -   1397330 CAG-TATCAT------CGGTTCTCC---------------C------acatttattgagatctcttatattccaggcactgggctccacactg----gaca
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        31167 80 -   1784207 CAGTTATCAT------TGATTCTCC-----CAcatttattc------acatttgttgagatctcttatattccaggcactgggctccacaatg----gaca
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22227949 68 + 158406734 ----TATCAC------TGATCTTCC-----CAC----------------ACTTGTTGAGATCT--TATATTGTAAGCACTGAACTCAACACTGAACAGACA
i calJac3.chr6              I 2 C 0
s saiBol1.JH378108           50464264 65 +  54856640 ----TATCAC------TGATCTTCC-----CAC--------------ATATTTGTTGAGATCT--TATATTCTAGGC-----ACTTAACATTGAACAGACA
i saiBol1.JH378108          I 2 C 0
s cebCap1.NW_016107610v1       607673 70 -   2910086 ----TATCAC------TGATCTTCC-----CAC--------------ACATTTGTTGAGATCT--TATATTCTAGGCACTGAACTCAACATTGAAGAGACA
i cebCap1.NW_016107610v1    I 2 C 0
s dasNov3.JH570731            1789304 96 +   3943991 CCG-TACTATGCTCCCCCACCTTCCACAAACACATGCATTCCTATCAACACTTTGTGGGACCTCCTACGCTTCAGCCACTGGGCTCAGCATTG----GACA
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40630398 129 +  42888418 I

a score=218076.000000
s hg38.chr15_KI270850v1_alt    325502 26 +    430880 caaagACACCATTCATCCTAACTCCC
s panTro5.chr15              63478913 26 +  83230942 caaagACACCATTCATCCTAACTCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436299 26 +  99763055 CAAAGACACCATTCATCCTAACTCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        36153 26 -   1709092 CAAAGACACCATTCATCCTAACTCCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17187744 14 - 121039945 ------------TCATCCTACCTCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60876548 26 + 169600520 caaagACACCACTTATCCTACCTCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108403257 26 - 171882078 CAAAGACACCACTTATCCTACCTCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        13728 26 -   2311642 caaagACACCACTTATCCTACCTCCC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        11881 26 -   1987038 caaagACACCACTTATCCTACCTCCC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092389 26 -  24206276 CAAAGACACCACTTATCCTACCTCCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7582 26 -   1397330 caaagACACCACTTATCCTACCTCCC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        31247 26 -   1784207 caaagACACCACTCATCCTACCTCCC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22228017 26 + 158406734 CAAAGACACCATTCATCATACCTCCC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50464329 26 +  54856640 CAAAGACACCATGCATCATACCTCCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       607743 26 -   2910086 CAAAGACACCATTCATCATACCTCCC
i cebCap1.NW_016107610v1    C 0 I 32
s canFam3.chr3               54400086 26 +  91889043 CAGGGGCACCAGCCATTCTACCTCCC
i canFam3.chr3              N 0 C 0
s dasNov3.JH570731            1789400 15 +   3943991 ------CACAGCCAGTCTTGT-----
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40630398 129 +  42888418 I

a score=196917.000000
s hg38.chr15_KI270850v1_alt    325528 28 +    430880 ACTGAAAGAAA-GTCAACCTCTGATACAC
s panTro5.chr15              63478939 29 +  83230942 ACTGAAAGAAAAGTCAACCTCTGATACAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436325 29 +  99763055 ACTGAAAGAAAAGTCAACCTCTGATACAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        36179 29 -   1709092 ACTGAAAGAAAAGTCAACCTCTGATACAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17187758 29 - 121039945 ACTGAAAGAAAAGTCAAACCCTGATACAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60876574 29 + 169600520 ACTGACAGAAAAGTAAAACCCTGATACAC
i rheMac8.chr7              C 0 I 2
s macFas5.chr7              108403283 29 - 171882078 ACTGACAGAAAAGTAAAACCCTGATACAC
i macFas5.chr7              C 0 I 2
s macNem1.NW_012011945v1        13754 29 -   2311642 ACTGACAGAAAAGTAAAACCCTGATACAC
i macNem1.NW_012011945v1    C 0 I 2
s cerAty1.NW_012002657v1        11907 29 -   1987038 ACTGACAGAAAAGTAAAACCCTGATACAC
i cerAty1.NW_012002657v1    C 0 I 2
s chlSab2.chr29              21092415 29 -  24206276 ACTGACAGAAAAGTAAAACCCTGATACAC
i chlSab2.chr29             C 0 I 2
s manLeu1.NW_012106908v1         7608 29 -   1397330 ACTGACAGAAAAGTAAAACTCTGATACAC
i manLeu1.NW_012106908v1    C 0 I 2
s colAng1.NW_012117110v1        31273 29 -   1784207 ACTGACAGAAAAGTAAAACCCTGATACAC
i colAng1.NW_012117110v1    C 0 I 2
s calJac3.chr6               22228043 28 + 158406734 ACTGACACAAA-GTCCTACCCTAATACAC
i calJac3.chr6              C 0 I 2
s saiBol1.JH378108           50464355 28 +  54856640 ACTGACACAAA-GTCCTACCCTAATACAC
i saiBol1.JH378108          C 0 I 2
s canFam3.chr3               54400112 26 +  91889043 ACCCAC---AATGCCCAACCCTCAAACAC
i canFam3.chr3              C 0 I 2
s dasNov3.JH570731            1789415 24 +   3943991 ----ACAGAAG-GCCAAACCCTGATACAA
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40630398 129 +  42888418 I
e cebCap1.NW_016107610v1       607769 32 -   2910086 I

a score=11504.000000
s hg38.chr15_KI270850v1_alt    325556 1 +    430880 G
s panTro5.chr15              63478968 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436354 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        36208 1 -   1709092 A
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17187787 1 - 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60876605 1 + 169600520 G
i rheMac8.chr7              I 2 C 0
s macFas5.chr7              108403314 1 - 171882078 G
i macFas5.chr7              I 2 C 0
s macNem1.NW_012011945v1        13785 1 -   2311642 G
i macNem1.NW_012011945v1    I 2 C 0
s cerAty1.NW_012002657v1        11938 1 -   1987038 G
i cerAty1.NW_012002657v1    I 2 C 0
s chlSab2.chr29              21092446 1 -  24206276 G
i chlSab2.chr29             I 2 C 0
s manLeu1.NW_012106908v1         7639 1 -   1397330 G
i manLeu1.NW_012106908v1    I 2 C 0
s colAng1.NW_012117110v1        31304 1 -   1784207 G
i colAng1.NW_012117110v1    I 2 C 0
s calJac3.chr6               22228073 1 + 158406734 G
i calJac3.chr6              I 2 C 0
s saiBol1.JH378108           50464385 1 +  54856640 G
i saiBol1.JH378108          I 2 C 0
s aotNan1.NW_018505940v1     40630527 1 +  42888418 G
i aotNan1.NW_018505940v1    I 129 C 0
s canFam3.chr3               54400140 1 +  91889043 G
i canFam3.chr3              I 2 C 0
s dasNov3.JH570731            1789439 1 +   3943991 G
i dasNov3.JH570731          C 0 C 0
e cebCap1.NW_016107610v1       607769 32 -   2910086 I

a score=949927.000000
s hg38.chr15_KI270850v1_alt    325557 105 +    430880 ATAATCCTGTTGCTACCTTCTGAACATGGGCAAGTTGGCCCAAATTGTATGTAC----CCAGCAGGGGCTG-------AAGAC---------------CCAGGGAA-GCAGGG--------------------TGGAGCTGC------CAAAGCAGCT
s panTro5.chr15              63478969 105 +  83230942 ATAATCCTGTTGCTACCTTCTGAACGTGGGCAAGTTGGCCCAAATTGTATGCAC----CCAGCAGGGGCTG-------AAGAC---------------CCAGGGAA-GCAGGG--------------------CGGAGCTGC------CAAAGCAGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436355 105 +  99763055 ATAATCCTGTTGCTACCTTCTGAACGTGGGCAAGTTGGTCCAAATTGTATGCAC----CCAGCAGGGGCTG-------AAGAC---------------CCAGGGAA-GCAGGG--------------------CGGAGCTGC------CAAAGCAGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        36209 105 -   1709092 ATAATCCTGTTGCTACCTTCTGAACGTGGGCAAGTTGGCCCAAATTGTATGTAC----CCAGCAGAGGCTG-------AAGAC---------------CCAGGGAA-GCAGGG--------------------TGGAGCTGC------CAAAGCAGCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17187788 105 - 121039945 ATAATCCTGTTGCTACCTTCTGAACGTGGGCAAGTTGGCCCAAATTGTGTGTAC----CCAGCACGGGCTG-------AAGAC---------------CCAGGGAA-GCAGGG--------------------TGGAGCTAT------CAAAGCATCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60876606 105 + 169600520 ATAATCCTGTTGCTACCATCTCAATGTGGGCAAGTTGGCCCAAATTATGTGTAC----CGAGCAGGGGTTG-------AAGAG---------------CCAGGGAA-GCAGGG--------------------TGGGGCTGT------CAAAGCAGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108403315 105 - 171882078 ATAATCCTGTTGCTACCATCTCAATGTGGGCAAGTCGGCCCAAATTATGTGTAC----CGAGCAGGGGTTG-------AAGAG---------------GCAGGGAA-GCAGGG--------------------TGGGGCTGT------CAAAGCAGCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        13786 105 -   2311642 ATAATCCTGTTGCTACCATCTCAATGTGGGCAAGTTGGCCCAAATTATGTGTAC----CGAGCAGGGGTTG-------AAGAG---------------CCAGGGAA-GCAGGG--------------------TGGGGCTGT------CAAAGCAGCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        11939 105 -   1987038 ATAATCCTGTTGCTACCATCTCAATGTGGGTAAGTTGGCCCAAATTATGCGTAC----CGAGCAGGGGTTG-------AAGAC---------------CCAGGGAA-GCAGGG--------------------TGGGGCTGT------CAAAGCAGCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092447 105 -  24206276 ATAATCCTGTTGCTACCATCTCAATGTGGGCAAGTTGGCCCAAATTATGTGTAC----CGAGCAGGGGTTG-------AAGAC---------------CCAGGGAA-GCAGGG--------------------TGGGGCTAT------CAAAGCAGCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7640 105 -   1397330 ATAATCCTGTTGCTACCATCTCAATGTGGGCAAGTTGGCCCAAATTATGTGTAC----CGAGCAGGGGTTG-------AAGAC---------------CCAGGGAA-GCAGGG--------------------TGGGGCTGT------CAAAGCAGCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        31305 105 -   1784207 ATAATCCTGTTGCTACCATCTCAATGTGGGCAAGTTGGCCCAAATTATCTGTAC----TGAGCAGGGGCTG-------AAGAC---------------CCAGGTAA-GCAGGG--------------------TGGGGCTCT------CAAAGCAGCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22228074 115 + 158406734 ATAATCCTGTTGTTACCTTCTCAAGGAGGGCAAGTTGGCCCAAACTGTGTGCAC----CCAGGAGGAGGTGAAGATCAAAGAC---------------CCAGGGAA-ACAGGG--------------------TGGAGCTGT---CAGCAAAGCAGCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50464386 112 +  54856640 GTAATCCCGTTGTTACCTTCGCGAGGAGGGCAAGTTGGCCCAAATTGTGTGCAC----CCAGGAGGA---GAAGATCAAAGAC---------------CTAGGCAA-GCAGGG--------------------TGGAGCTGT---CAGCAAAGCAGCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       607801 115 -   2910086 ATAATCCTGTTGTTACCTTCTCCAGGAGGGCGAGTTGGCCCAAATTGTATGCAC----CCAGGAGGAGGTGAAAATCAAAGAC---------------CCAGGGAA-GCAGGG--------------------TGGAGCTGT---CAGCAAAGCAGCT
i cebCap1.NW_016107610v1    I 32 C 0
s aotNan1.NW_018505940v1     40630528 115 +  42888418 ATAATCCTGTTGTTACCTTCTCAAGGAGGGCAAGTTGGCCCAAATTGTGTGCAC----CCAGGAGGAGGTGAAGATCAAAGAC---------------CCAGGGAA-GCAGGG--------------------TGGAGCTGT---CAGCAAAGCAGCT
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54400141 141 +  91889043 AGGA-----GTGTTACCCTTTCAAGACAGGTTCATTAGCCCAGATTGTGTGTAC----CAGGGAGAGGGTG-------AGGATCAAGCTCAGGTTACACCAGGTGA-GGAGGAAAGCATCTCCTGACTTCACCTGAAGCTACAGTTGGTACTAGGGCC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1789440  99 +   3943991 ------------CTGCCCTCCCCAGGTTGGTGGGTT---CCAAGGAGCATCAACAGCACCAGGAGAGGCTGGAAG---CAGAC---------------CCAGGTCATGCAGGG--------------------CAAATAGGG------GAAAGCATCT
i dasNov3.JH570731          C 0 I 159

a score=513755.000000
s hg38.chr15_KI270850v1_alt    325662 58 +    430880 TTCCAGGCTCATACTGCAGACCACTCTCAA----CACGTTCA---GGCTTGCCCTTGCTCCTTTA
s panTro5.chr15              63479074 58 +  83230942 TTCCAGGCTCATACTGCAGACCACTCTCAA----CACGTTCA---GGCTTGCCCTTGCTCCTTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436460 58 +  99763055 TTCCAGGCTCATACTGCAGACCACTCTCAA----CACGTTCA---GGCTTGCCCTTGCTCCTTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        36314 59 -   1709092 TTCCAGGCTCATACTGCAGACCACTCTCAA----CACGTTCA--GGGCTTGCCCTTGCTTCTTCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17187893 58 - 121039945 TTCCAGGCTCATACGGCAGACCACTCTCGA----CACACTCA---GGCTTGCCCTTGCTCCTTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60876711 58 + 169600520 TTCCAGGCTCATACTGCAGACCACTAGCCA----CACGCTCA---GGCTTGCCCTTGCTCATTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108403420 58 - 171882078 TTCCAGGCTCATACTGCAGACCACTAGCCA----CACGCTCA---GGCTTGCCCTTGCTCATTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        13891 58 -   2311642 TTCCAGGCTCATACTGCAGACCACTAGCCA----CACGCTCA---CGCTTGCCCTTGCTCATTTA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        12044 58 -   1987038 TTCCAGGCTCATACTGCAGACCACTAGCCA----CACGCTCA---GGCTTGCCCTTGCTCATTTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092552 58 -  24206276 TTCCAGGCTCATACTGCAGACCACTAGCCA----CACGCTCA---GGCTTGCCCTTGCTCGTTTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7745 58 -   1397330 TTCCAGGCTCATACTGCAGACCACTAGCCA----CACGCTCA---GGCTTGCCCTTGCTCATTTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        31410 58 -   1784207 TTCCAGGCTCATACTGCAGACCACTAGCCA----CATGCTCA---GGCTTGCCCTTGCTCATTTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22228189 57 + 158406734 TTCCAGGCTCACACTGCACACCACTCCCCA----CAGTTCCA----GCTTGCCCTTGCCCCTTTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50464498 58 +  54856640 TTCCAGGCTCACACTGCAGACCACTCCCCA----CAGTTCCA---GGCTTGCCCTTGCTCCCTTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       607916 56 -   2910086 TTCCAGGCTCACATTGCAGACCACTCCC------CAGTTCCA---GGCTTGCCCTTGCTCCCTTA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40630643 58 +  42888418 TTCCAGGCTCACACTGCAGACCACTCCCCA----CAGTTCCA---GGCTTGCCCTTGCTCCCTTA
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54400282 62 +  91889043 TGCCAGGACTAAGCAGGATGGGGCTGGCAAGCAGCATAGCCACGTGGCTCACCT---CTCCAATA
i canFam3.chr3              C 0 C 0
e dasNov3.JH570731            1789539 159 +   3943991 I

a score=590909.000000
s hg38.chr15_KI270850v1_alt    325720 73 +    430880 CT--AAACTCTG---GTGAACCCACTCCCCATAAACCAGATGCAGCAGCACCT--GAATCCCAGACAAGTGC--------------CAGCTGAT
s panTro5.chr15              63479132 73 +  83230942 CT--AAACTCTG---GTGAACCCACTCCCCATAAACCAGATGCAGCAGCACCT--GAATCCCAGACAAGTGC--------------CAGCTGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436518 73 +  99763055 CT--AAACTCTG---GTGAACCCACTCCCCATAAACCAGATGCAGCAGCACCT--GAATCCCAGATAAGTGC--------------CAGCTGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        36373 73 -   1709092 CT--AAACTCTG---GTGAACCCACTCCCCATAAACCAGATGCAGCAGCACCT--GAATCCCAGACAAGTGC--------------CAGCTGAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17187951 73 - 121039945 CT--AAACTCTG---GTGAACACACTCCCCATAAACCAGATGAAGCAGCACCT--GAACCCCAGGCAAGTGC--------------CAGCTGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60876769 67 + 169600520 CT--AAACTCCG---GTGAACCCATTCCCCATAGAC------AAGCAGCACCC--GAATCCCAGGCAAGTGC--------------CAGCTGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108403478 67 - 171882078 CT--AAACTCCG---GTGAACCCATTCCCCATAGAC------AAGCAGCACCC--GAATCCCAGGCAAGTGC--------------CAGCTGAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        13949 67 -   2311642 CT--AAACTCCG---GTGAACCCATTCCCCATAGAC------AAGCAGCACCC--AAATCCCAGGCAAGTGC--------------CAGCTGAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        12102 67 -   1987038 CT--AAACTCCG---GTGAACCCATTCCCCATAGAC------AAGCAGCACCC--GAATCCCAGGCAAGTGC--------------CAGCTGAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092610 67 -  24206276 CT--AAACTCCG---GTGAACCCATTCCCCATAGAC------AAGCAGCCCCC--GAATCCCAGGCAAGTGC--------------CAGCTGAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7803 67 -   1397330 CT--AAACTCCG---GTGAACCCATTCCCCATAGAC------AAGCAGCACCC--GCATCCCAGGCAAGTGC--------------CAGCTGAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        31468 67 -   1784207 CT--TAACTCTG---GTGAACCCACTCCCCATAGAC------AAGCAGCATCC--AAATCCCAGGCAAGTGC--------------CAGCTGAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22228246 72 + 158406734 CTAAAAACTCTG---GTGAA-CCACTTTCCATAGACCAGATGAAGGAGCACCC--AAGCCCCAGGCAAGTGC--------------CAGC--AA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50464556 74 +  54856640 CTAAAAACTCCG---GTGAA-CCACTCTTCATAGACCAGATGAAGGAGCACTC--AAGTCCCAGGCAAGTGC--------------CAGCTGAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       607972 75 -   2910086 CTAAAAACTCCG---GTGAACCCACTCTCCATAGACCAGATGAAGGAGCACCC--AAGTCCCAGGCAAGTGC--------------CAGCTGAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40630701 75 +  42888418 CTAAAAACTCTG---GTAAACCCACTCTCCGTAGACCAGATGAAGGAGCACCC--AAGTCCCAGGCAAGTGC--------------CAGCTGAT
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54400344 72 +  91889043 CA--CATGTCAGTCTGTATGGGCACCGCCCAGAAGCCACTTACAGAAGCTCAC---ACTGCAGAGCGCTCCT--------------CAG--GA-
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1789698 89 +   3943991 CT--ATGCTCAG---CTGAACCTGCTCCCCACGGACCATGCAGGCTGGCACCCTTAGATCCCAGGCAACTGCTGGGCCTGGAGAGGCAGTTGGC
i dasNov3.JH570731          I 159 C 0

a score=211303.000000
s hg38.chr15_KI270850v1_alt    325793 26 +    430880 --------CTGTTGCCTCGAG----AGCTCCTGCCTTT-
s panTro5.chr15              63479205 26 +  83230942 --------CTGTTGCCTCAAG----AGCTCCTGCCTTT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436591 26 +  99763055 --------CTGTTGCCTCAAG----AGCTCCTGCCTTT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        36446 26 -   1709092 --------CTGTTGCCTCGAG----AGCTCCTGCCTTT-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17188024 26 - 121039945 --------GTGTTGCCTTGAG----AACTCCTGCCTTT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60876836 25 + 169600520 --------GTGTCACCTTGAG----AGCTCCTGCCTT--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108403545 25 - 171882078 --------GTGTCACCTTGAG----AGCTCCTGCCTT--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        14016 25 -   2311642 --------GTGTCACCTTGAG----AGCTCCTGCCTT--
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        12169 26 -   1987038 --------GTGTCACCTTGAG----AGCTCCTGCCTTT-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092677 26 -  24206276 --------GTGTCACCTTGAG----AGCTCCTGCCTTT-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7870 26 -   1397330 --------GTGTCACCTTGAG----AGCTCCTGCCTTT-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        31535 26 -   1784207 --------GTGTCACTTTGAG----AGCTCCTGCCTTT-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22228318 22 + 158406734 --------GTGTCACCTT-------AGCTCCTGCCTT--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50464630 25 +  54856640 --------GAGTCACCTTGAG----AGCTCGTGCCTT--
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       608047 25 -   2910086 --------GTGTTATCTTGGG----AGCTCCTGCCTT--
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40630776 25 +  42888418 --------GTGTCACCTAGAG----AGCTCCTGCCTT--
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             623625 28 -  36342412 --------ctgtcaccctgggta--aaTTCCTGCACTT-
i otoGar3.GL873530          N 0 C 0
s canFam3.chr3               54400416 30 +  91889043 --------TTTCTCCCTTGAGAAAGAACTCCTGCCCTT-
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1789787 35 +   3943991 ACACAAGTGTGCCTGAGAAAG----AACTTCTGTGCTTA
i dasNov3.JH570731          C 0 C 0

a score=-6759.000000
s hg38.chr15_KI270850v1_alt    325819 1 +    430880 -C
s panTro5.chr15              63479231 1 +  83230942 -C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436617 1 +  99763055 -C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        36472 1 -   1709092 -C
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17188050 1 - 121039945 -C
i nomLeu3.chr6              C 0 C 0
s cerAty1.NW_012002657v1        12195 1 -   1987038 -A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092703 1 -  24206276 -A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7896 1 -   1397330 -A
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        31561 1 -   1784207 -A
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873530             623653 1 -  36342412 -A
i otoGar3.GL873530          C 0 I 1
s mm10.chr7                  81342692 1 + 145441459 -C
i mm10.chr7                 N 0 C 0
s canFam3.chr3               54400446 1 +  91889043 -A
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1789822 1 +   3943991 G-
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40630801 0 +  42888418 C
e calJac3.chr6               22228340 0 + 158406734 C
e cebCap1.NW_016107610v1       608072 0 -   2910086 C
e macNem1.NW_012011945v1        14041 0 -   2311642 C
e macFas5.chr7              108403570 0 - 171882078 C
e rheMac8.chr7               60876861 0 + 169600520 C
e saiBol1.JH378108           50464655 0 +  54856640 C

a score=141657.000000
s hg38.chr15_KI270850v1_alt    325820 13 +    430880 CTCTACCCACACA
s panTro5.chr15              63479232 13 +  83230942 CTCTACCCACACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436618 13 +  99763055 CTCTACCCACACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        36473 13 -   1709092 CTCTACCCACACA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17188051 13 - 121039945 CTCTACCCACACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60876861 10 + 169600520 ---TACCCACACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108403570 10 - 171882078 ---TACCCACACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        14041 10 -   2311642 ---TACCCACACA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        12196 13 -   1987038 CTCTACCCACACA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092704 13 -  24206276 CTGTACCCACACA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7897 13 -   1397330 CTCTACCCACACA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        31562 13 -   1784207 CTCTACCCACACA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22228340 10 + 158406734 ---TTCCCACATA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50464655 10 +  54856640 ---TTCCCACACA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       608072 10 -   2910086 ---TTCCCACACA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40630801 10 +  42888418 ---TTCCCACACA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113261547 13 + 116334831 CTCCACCCACACC
i micMur3.chr9              N 0 C 0
s otoGar3.GL873530             623655 13 -  36342412 CTCCACCCATACC
i otoGar3.GL873530          I 1 C 0
s mm10.chr7                  81342693 13 + 145441459 CTCCACCCGACCC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54400448 13 +  91889043 CACTACTGGCACC
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1789823 13 +   3943991 CTCCTCCCACAGG
i dasNov3.JH570731          C 0 C 0

a score=491330.000000
s hg38.chr15_KI270850v1_alt    325833 30 +    430880 CAACTGCAAAGATGACACAGGC----AAGGCTGT
s panTro5.chr15              63479245 30 +  83230942 CAACTGCAAAGATGACACAGGC----AAGGCTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436631 30 +  99763055 CAACTGCAAAGATGACACAGGC----AAGGCTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        36486 30 -   1709092 CAACTGCAAAGATGACACAGGC----AAGGCTGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17188064 30 - 121039945 CAACTGCAAAGATGACACAGGC----AAGGCTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60876871 30 + 169600520 CAACTGCAAAGATGACACAGGA----AAGGCTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108403580 30 - 171882078 CAACTGCAAAGATGACACAGGC----AAGGCTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        14051 30 -   2311642 CAACTGCAAAGATGACACAGGC----AAGGCTGT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        12209 30 -   1987038 CAACTGCAAAGATGACACAGGC----AAGGCTGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092717 30 -  24206276 CAACTGCAAAGATGACACAGGT----AAGGCTGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7910 30 -   1397330 CAACTGCAAAGATGACACAAGC----AAGGCTGT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        31575 34 -   1784207 CAACTGCAAAGATGACACAGGCAAGGAAGGCTGT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22228350 30 + 158406734 CAGCTGCAAAGATGACACAGGC----AAGGCTGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50464665 30 +  54856640 CAACTGCAAAGATGACACAGGC----AAGGCTGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       608082 30 -   2910086 CAACTGCAAAGATGACACAGGC----AAGGCTGT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40630811 30 +  42888418 CAACTGCAAAGATGACACAGGC----AAGGCCGT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113261560 30 + 116334831 CAACCGCACAGATGACACAGGT----AAGGCTGT
i micMur3.chr9              C 0 I 38
s proCoq1.NW_012142813v1         6391 30 +     80520 CAACCGCACAGATGACACAGGC----AAGGCTGC
i proCoq1.NW_012142813v1    N 0 C 0
s otoGar3.GL873530             623668 28 -  36342412 CAA--GCACAGATAACACAGAC----AAAGCTGT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81342706 30 + 145441459 TAACAGCAAGAACAATACAGAC----AAACTTGT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54400461 25 +  91889043 CAACC-CACACAGGACAC--------AAGGTTGT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1789836 30 +   3943991 CAACGCCACAGATGACAGAGGC----AAGGATGA
i dasNov3.JH570731          C 0 C 0

a score=472072.000000
s hg38.chr15_KI270850v1_alt    325863 41 +    430880 TGTCC-CAGATTTATTGAAAATAATACAGCACTACAGAAAAA
s panTro5.chr15              63479275 41 +  83230942 TGTCC-CAGATTTATTGAAAATAATACAGCACTACAGAAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436661 41 +  99763055 TGTCC-CAGATTTATTGAAAATAATACAGCACTACAGAAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        36516 41 -   1709092 TGTCC-CAGATTTATTGAAAATAATACAGCACTACAGAAAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17188094 41 - 121039945 TGTCC-CAGATTTATTGAAAATAATACAGCACTACAGAAAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60876901 39 + 169600520 TGT-C-CAGATTTATTG-AAATAATATAGCACTGCAGAAAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108403610 41 - 171882078 TGTCC-CAGATTTATTGAAAATAATATAGCACTGCAGAAAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        14081 41 -   2311642 TGTCC-CAGATTTATTGAAAATAATATAGCACTGCAGAAAAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        12239 41 -   1987038 TGTCC-CAGATTTATTGAAAATAATATAGCACTGCAGAAAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092747 41 -  24206276 TGTCC-CAGATTTATTGAAAATAATATAGCACTGCAGAAAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7940 41 -   1397330 TGTCC-CAGATTTATTGAAAATAATATAGCACTGCAGAAAAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        31609 41 -   1784207 TGTCC-CAGATTTATTGAAAATAATATAGCACTGCAGAAAAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22228380 33 + 158406734 TGTCC-CAGGTTTATTGAAAATAATACAGCATTG--------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50464695 33 +  54856640 TGTGC-CAGGTTTATTGAAAATAATACAGCATTG--------
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       608112 33 -   2910086 TGTCC-CAGGTTTATTGAAAGTAATACAGCATTG--------
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40630841 33 +  42888418 TGTCC-TAGGTTTATTGAAAATAATACAGCATTG--------
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1         6421 37 +     80520 AGTCC-CAAGTTTATT-AAAATATTACAGCAC-AGAGAAG--
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             623696 37 -  36342412 TGTCC-CAGATTTATT-AAAATATTACAGCAC-ACAGAAG--
i otoGar3.GL873530          C 0 I 4
s mm10.chr7                  81342736 32 + 145441459 --TTT-CAGGTTTATTGAAAA---TATGGCATAACAGA----
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54400486 41 +  91889043 TGTCC-AAGGTTTATTGAAGATATTACAGCACAGCAGAAAGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1789866 42 +   3943991 TGTCCTCAGGTTTATTGAAAATATTACAGCATAGCAGAAAGA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113261590 38 + 116334831 I

a score=1955394.000000
s hg38.chr15_KI270850v1_alt    325904 104 +    430880 ATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGAAGGTTGGACAGACTGCCGAAGTCCTGGAACGAGAAAAT--GGATTC
s panTro5.chr15              63479316 104 +  83230942 ATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGAAGGTTGGACAGACTGCCGAAGTCCTGGAACGAGAAAAT--GGATTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436702 104 +  99763055 ATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGAAGGTTGGACAGACTGCCGAAGTCCTGGAACGAGAAAAT--GGATTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        36557 104 -   1709092 ATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGAAGGTTGGACAGACTGCCGAAGTCCTGGAACGAGAAAAT--GGATTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17188135 104 - 121039945 ATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGAAGGTTGGACAGACTGCCGAAGTCCTGGAATGAGAAAAT--GGATTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60876940 104 + 169600520 ATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGACAGACTGCCGAAGTCCTGGAACGAGAAAAT--GGATTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108403651 104 - 171882078 ATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGACAGACTGCCGAAGTCCTGGAACGAGAAAAT--GGATTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        14122 104 -   2311642 ATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGACAGACTGCCGAAGTCCTGGAACGAGAAAAT--GGATTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        12280 104 -   1987038 ATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGACAGACTGCCGAAGTCCTGGAACGAGAAAAT--GGATTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092788 104 -  24206276 ATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGACAGACTGCCGAAGTCCTGGAACGAGAAAAT--GGATTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         7981 104 -   1397330 ATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGACAGACTGCCGAAGTCCTGGAACGAGAAAAT--GGATTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        31650 104 -   1784207 ATTCAAACAGGTCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGACAGACTGCCAAAGTCCTGGAACGAGAAAAT--GGATTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22228413  94 + 158406734 ATTCAAACAGGTCCCCGAGGTGTTTTGAAGTTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGATAGACTGCCAAAATCCTGGAATGAGA------------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50464728 104 +  54856640 ATTCAAACAGGGCCCCGAGGCGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGATAGACTGCCAAAATCCTGGAACGACAAAAT--GGATTC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       608145 104 -   2910086 ATTCAAACAGGTCCCCGAGGTGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGACAGACTGCCAAAATCCTGGAACGAGAAAAT--GGATTC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40630874 104 +  42888418 ATTCAAACAGGTCCCCGAGGTGTTTTGAAATTCATCCCAACAGTAGGCTGAGTGACCTGCAGGTTGGATAGACTGCCAAAATCCTGGAACGAGAAAAT--GGATTC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113261628 104 + 116334831 ATTCAAACGGCTCCACGTGGTGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGACAGACTGCCAAAGTCCTGGAACAACAAAAT--GGATTC
i micMur3.chr9              I 38 I 764
s proCoq1.NW_012142813v1         6458 104 +     80520 ATTCAAACAGCTCCACGTGGTGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGACAGACTGCCAAAGTCCTGGAACAACAAAAT--GGATTC
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             623737 105 -  36342412 ATTCAAACAGTTCCACGTGGTGTTTTGAAATTCATCCCAACTGTAGGCTGAGTGACCTGGAGGTTGGACAGACTGCCAAAGTCCTGGAACAACAAAGC-AGGATTC
i otoGar3.GL873530          I 4 C 0
s mm10.chr7                  81342768 102 + 145441459 --TTAAACAGCTCCACGTGGTGTTTTGAAATTCATGCCAACTGTAGGCTGAGTGACCTGAAGGTTAGAGAGACTGCCAAAGTCCTGCAACAAAACAAG--ACACAC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54400527 105 +  91889043 -TTCAAACAGCTCCCCGTGGTGTTTTAAAATTCATCCCAACTGTAGGCTGAGTGACCTGCAGGTTGGACAGGCTTCCAAAGTCCTGGAAAAACAAAGTTAAGATTC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1789908 103 +   3943991 -TTCAAACGGCTCCACGTGGTGTTTTGAAATTCATCCCAACTGTGGGCTGAGTGACCTGCAGGTTGGAGAGGCTGCCGAAGTCCTGGAACAACAAAGT--GGGTTC
i dasNov3.JH570731          C 0 C 0

a score=13713.000000
s hg38.chr15_KI270850v1_alt    326008 4 +    430880 A---GTG
s panTro5.chr15              63479420 4 +  83230942 A---GTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436806 4 +  99763055 A---GTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        36661 4 -   1709092 A---GTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17188239 4 - 121039945 A---GTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60877044 4 + 169600520 A---GTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108403755 4 - 171882078 A---GTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        14226 4 -   2311642 A---GTG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        12384 4 -   1987038 A---GTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092892 4 -  24206276 A---GTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         8085 4 -   1397330 A---GTG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        31754 4 -   1784207 A---GTG
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50464832 6 +  54856640 AG-TGTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       608249 6 -   2910086 AG-TGTG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40630978 6 +  42888418 AG-TGTG
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1         6562 4 +     80520 A---GTG
i proCoq1.NW_012142813v1    C 0 I 751
s otoGar3.GL873530             623842 4 -  36342412 A---GTG
i otoGar3.GL873530          C 0 I 2
s mm10.chr7                  81342870 4 + 145441459 ---GGTG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54400632 4 +  91889043 A---GTG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1790011 6 +   3943991 -AGCGTG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113261732 764 + 116334831 I
e calJac3.chr6               22228507 0 + 158406734 C

a score=107201.000000
s hg38.chr15_KI270850v1_alt    326012 10 +    430880 AGCAGTTACT
s panTro5.chr15              63479424 10 +  83230942 AGCAGTTACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436810 10 +  99763055 AGCAGTTACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        36665 10 -   1709092 AGCAGTTACT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17188243 10 - 121039945 AGCAGTTACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60877048 10 + 169600520 AGCAGTTACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108403759 10 - 171882078 AGCAGTTACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        14230 10 -   2311642 AGCAGTTACT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        12388 10 -   1987038 AGCAGTTACT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092896 10 -  24206276 GGCAGTTACT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         8089 10 -   1397330 AGCAGTTACT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        31758 10 -   1784207 AGCAGTTACT
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50464838 10 +  54856640 AGCAGTTACT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       608255 10 -   2910086 AGCAGTTACT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40630984 10 +  42888418 AACAGTTACT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             623848 10 -  36342412 AGGGATCTTC
i otoGar3.GL873530          I 2 C 0
s mm10.chr7                  81342874 10 + 145441459 AGCGGGCACT
i mm10.chr7                 C 0 I 826
s canFam3.chr3               54400636  7 +  91889043 ---TGGTTCT
i canFam3.chr3              C 0 I 5
s dasNov3.JH570731            1790017 10 +   3943991 AGCAGTGCCT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113261732 764 + 116334831 I
e proCoq1.NW_012142813v1         6566 751 +     80520 I
e calJac3.chr6               22228507  0 + 158406734 C

a score=4779556.000000
s hg38.chr15_KI270850v1_alt    326022 522 +    430880 ---GGTGAGAT-------------------------------CTGTG-------------------AGTG--GACC-----------------------------CCAGAAGAAAAC----ACAG------------GCCCCTAGAG------CCA-CAGCA---CTCTCAAGGGGGTCCAGAGGCGACCTGAAGGA-CCCTT-----TAAG-----AGCCAA-CAGGGTTC---------TCAATGCCTCC-CACTTT-TCCAGAGTGATCTTCCTTCAACACACACCTGAC---CATGTGGTATCCCCATTTACA------------------------------------------------AC----TCT-------------------ATGACTTTTACCCAATGT-----------------------ACCATGCCA-TTTGTATC------TGTTTTCACAACCCCTTCCTATCAATCACTCTAAAACACCgtttctcaatcttggcaacgtagacatcctgggctggaca-ttctttgttata---ggcagctgtactgtgtattgcagaaagtttagcaacatccttggcctctaccccttagaagttagcagg--tatccc-ctggctatgagaacgaa------a--aatgtgtctggacattgccaaatgtcctctaaagca-aaactctgtccctttgagaaT----------------ACAC-AGTGCCACTTGCTTTCCAGG------------------------ACCAGCCCTGGGTAAGAGCTATTACTAATCTAATC
s panTro5.chr15              63479434 522 +  83230942 ---GGTGAGAT-------------------------------CTGTG-------------------GGTG--GACC-----------------------------CCAGAAGAAAAC----ACAG------------GCCCCTAGAG------CCA-CAGCA---CTCTCAAGGGGGTCCAGAGGCGACCTGAAGGA-CCCTT-----TAAG-----AGCCAA-CAGGGTTC---------TCAATGCCTCC-CACTTT-TCCAGAGTGATCTTCCTTCAACACACACCTGAC---CATGTGGTATCCCCATTTACA------------------------------------------------AC----TCT-------------------ATGACTTTTACCCAATGT-----------------------ACCATGCCA-TTTGTATC------TGTTTTCACAACCCCTTCCTATCAATCACTCTAAAACACCgtttctcaatcttggcaacgtagacatcctgggctggaca-ttctttgttata---ggcagctgtactgtgtattgcagaaagtttagcaacatccttggcctctacccattagaagttagcagg--tatccc-ctggctatgagaacgaa------a--aatgtgtctggacattgccaaatgtcctctaaagca-aaactctgtccctttgagaaT----------------ACAC-AGTGCCACTTGCTTTCCAGG------------------------ACCAGCCCTGGGTAAGACCTATTACTAATCTAATC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80436820 522 +  99763055 ---GGTGAGAT-------------------------------CTGTG-------------------GGTG--GACC-----------------------------CCAGAAGAAAAC----ACAG------------GCCCCTAGAG------CCA-CAGCA---CTCTCAAGGGGGTCCAGAGGCGACCTGAAGGA-CCCTT-----TAAG-----AGCCAA-CAGGGTTC---------TCAATGCCTCC-CACTTT-TCCAGAGTGATCTTCCTTCAACACACACCTGAC---CATGTGGTATCCCCATTTACA------------------------------------------------AC----TCT-------------------ATGACTTTTACCCAATGT-----------------------ACCATGCCA-TTTGTATC------TGTTTTCACAACCCCTTCCTATCAATCACTCTAAAACACCgtttctcaatcttggcaacgtagacatcctgggctggaca-ttctttgttata---ggcagctgtactgtgtattgcagaaagtttagcaacatccttggcctctacccattagaagttagcagg--tatccc-ctggctatgagaacgaa------a--aatgtgtctggacattgccaaatgtcctctaaagca-aaactctgtccctttgagaaT----------------ACAC-AGTGCCACTTGCTTTCCAGG------------------------ACCAGCCCTGGGTAAGACCTATTACTAATCTAATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        36675 521 -   1709092 ---GGTGAGAT-------------------------------ATGTG-------------------GGTG--GACC-----------------------------CCAGAAG-AAAC----ACAG------------GCCCCTAGAG------CCA-CAGCA---CTCTCAAGGGGGTCCAGAGGCGACCTGAAGGA-CCCTT-----TAAG-----AGCCAA-CAGGGTTC---------TCAATGCCTCC-CACTTT-TCCAGAGTGATCTTCCTTCAACACACACCTGAC---CATGCGGTATCCCCATTTACA------------------------------------------------AC----TCT-------------------ATGACTTTTACCCAATGT-----------------------ACCAAGCCA-TTTGTATC------TGTTTTCACAACCCCTTCCTATCAATCACTCTAAAACACCAtttctcaatcttggcaatgtagacatcctgggctggaca-ttctttgttata---ggtagctgtactgtgtattgcagaaagtttagcaacatccttggcctctacccattagaagttagcagg--tatccc-ctggctatgagaacgaa------a--aatgtgtctggacattgccaaatgtcttctaaagca-aaactctgtccctttgagaaT----------------ACAC-AGTGCCACTTGCTTTCCAGG------------------------ACCAGCCCTGGGTAAGAGCTATTACTAATCTAATC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17188253 525 - 121039945 ---GGTGAGAT-------------------------------CTGTG-------------------GGTG--GACC-----------------------------CCAGAAGAAAAC----AGAG------------GCCCCTAGAG------CCA-CAGCA---CTCTCAAGGGGGTTCAGAGGCGACCTGAAGGA-CCCTT-----TAAG-----AGCCAA-CAGGGTTC---------GCAGTGCCTCC-CATTTT-TCCAGAGTGATCTTCCTTCAACACACACCTGACCATCATGTGGTATCCCCATTTACA------------------------------------------------AC----TCT-------------------ATGACTTTTACCCAATGT-----------------------ACCATGCCA-CTTGTATC------TGTTTTCACAACCCCTTCCTATCAATCACTCTAAAACACCgtttctcaatcttggcaacgtagacatcctgggctggaca-ttctttgttaaa---gggggctgtactgagtattgcagaaagtttagcaacatccttggcctctacgcattagaagttagcagg--tattcc-ctcgctatgagaaccaa------a--aacgtgtctggacaatgccaaatgtcctctaaagca-aaactctgtccctttgagaaT----------------ACAC-AGTGCCACTTGCTTTCCAGG------------------------ACCAGCCCCGGGTAAGAGCTATGACTAATCTAATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60877058 534 + 169600520 ---GGTGAGAT-------------------------------CTGTG-------------------GGTG--GGCC-----------------------------CCAGAAGAAAAC----AGAGGGCCTTCTCCCTGCCCCTAGAG------CCA-CAGCA---TTCTCAAGGAGGTCCAGAGGCTACCTGAAAGA-CCCTTTACTCTAAG-----AGCCAA-CAGGGGCC---------TCAATGCCTCC-CACTTT-TCCAGTGTGATCTTCCTTCAACACACACCTGAC---CGTGTGGTATCCCCATTTACA------------------------------------------------AC----TCT-------------------ACGACTTTCACCCAATGT-----------------------ACCATATCA-TTT---TC------TGTTTTCACAACCCCTTCCT----ATCACTCAAAAACACCAtttctcaatcttggcaatgtagacatcctgggctggaca-ttctttgttaca---gggagctgtcctgtgcattgcagaaagtttagcaacatccttggcctctatccattagaaattagcagg--tatccc-cttgctatgagaaccaa------aacaatgtgtctggacattgccaaatgtgctctaagaca-aaactctgtccctttgagaaT----------------ACAC-AGTGCCACTTGCTTTGCAGG------------------------ACCAGCCCCAGGTAACAGCTATTACTAATCTAATC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108403769 529 - 171882078 ---GGTGAGAT-------------------------------CTGTG-------------------GGTG--GGCC-----------------------------CCAGAAGAAAAC----AGAGGGCCTTCTCCCTGCCCCTAGAG------CCA-CAGCA---TTCTCAAGGAGGTCCAGAGGCTACCTGAAAGA-CCCTT-----TAAG-----AGCCAA-CAGGGGCC---------TCAATGCCTCC-CACTTT-TCCAGTGTGATCTTCCTTCAACACACACCTGAC---CATGTGGTATCCCCATTTACA------------------------------------------------AC----TCT-------------------ACGACTTTCACCCAATGT-----------------------ACCATACCA-TTT---TC------TGTTTTCACAACCCCTTCCT----ATCACTCAAAAACACCAtttctcaatcttggcaatgtagacatcctgggctggaca-ttctttgttaca---gggagctgtcctgtgcattgcagaaagtttagcaacatccttggcctctatccattagaaattagcagg--tatccc-cttgctatgagaaccaa------aacaatgtgtctggacattgccaaatgtgctctaagaca-aaactctgtccctttgagaaT----------------ACAC-AGTGCCACTTGCTTTGCAGG------------------------ACCAGCCCCAGGTAACAGCTATTACTAATCTAATC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        14240 534 -   2311642 ---GGTGAGAT-------------------------------CTGTG-------------------GGTG--GGCC-----------------------------CCAGAAGAAAAC----AGAGGGCCTTCTCCCTGCCCCTAGAG------CCA-CAGCA---TTCTCAAGGAGGTCCAGAGGCTACCTGAAAGA-CCCTTTACTCTAAG-----AGCCAA-CAGGGGCC---------TCAATGCCTCC-CACTTT-TCCAGTGTGATCTTCCTTCAACACACACCTGAC---CGTGTGGTATCCCCATTTACA------------------------------------------------AC----TCT-------------------ACGACTTTCACCCAATGT-----------------------ACCATACCA-TTT---TC------TGTTTTCACAACCCCTTCCT----ATCACTCAAAAACACCAtttctcaatcttggcaatgtagacatcctgggctggaca-ttctttgttaca---gggagctgtcctgtgcattgcagaaagtttagcaacaaccttggcctctatccattagaagttagcagg--tatccc-cttgctatgaaaaccaa------aacaatgtgtctggacattgccaaatgtgctctaagaca-aaactctgtccctttgagaaT----------------ACAC-AGTGCCACTTGCTTTGCAGG------------------------ACCAGCCCCAGGTAACAGCTATTACTAATCTAATC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        12398 534 -   1987038 ---GGTGAGAT-------------------------------CTGTG-------------------GGTG--GGCC-----------------------------CCAGAAGAAAAC----AGAGGGCCTTCTCCCTGCCCCTAGAG------CCA-CAGCA---TTCTCAAGGAGGTCCAGAGGCTACCTGAAAGA-CCCTTTACTCTAAG-----AGCCAA-CAGGGGCC---------TCAATGCCTCC-CACTTT-TCCAGTGTGATCTTCCTTCAACACACACCTGAC---CGTGTGGTATCCCCATTTACA------------------------------------------------AC----TCT-------------------ACAACTTTTACCCAATGT-----------------------ACCATACCA-TTT---TC------TGTTTTCACAACCCCTTCCT----ATCACTCAAAAACACCAtttctcaatcttggcaatgtagacatcctgggctggaca-ttctttgttaca---gggagctgtcctgtgcattgcagaaagtttagcaacatccttggcctctatccattagaagtcagcagg--tatccc-cttgctatgagaaccaa------aacaatgtgtctggacattgccaaatgtgctctaagaca-aaactctgtccctttgagaaT----------------ACAC-AGTGCCACTTGCTTTGCAGG------------------------ACCAGCCCCAGGTAAGAGCTATTACTAATCTAATC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21092906 534 -  24206276 ---GGTGAGAT-------------------------------CTGTG-------------------GGTG--GGCC-----------------------------CCAGAAGAAAAC----AGAGTGCCTTCTCCCTGCCCCTAGAG------CCA-CAGCA---TTCTCCAGGAGGTCCAGAGGCTACCTGAAAGA-CCCTTTACTCTAAG-----AGCCAA-CAGGGGCC---------TCAATGCCTCC-CACCTT-TCCAGTGTGATCTTCCTTCAACACACACCTGAC---CGTGTGGTTTCCCCATTTACA------------------------------------------------AC----TCT-------------------ACGACTTTTACCCAATGT-----------------------ACCATATCA-TTT---TC------TGTTTTCACAACCCCTTCCT----ATCACTCAAAAACACCACttctcaatcttggcaatgtagacatcctgggctggaca-ttctttgttaca---gggatctgtcctgtgcattgcagaaagtttagcaacatccttggcctctatccattagaagttagcagg--tatccc-cttgctatgagaaccaa------aacaatgtgtctggacattgtcaaatgtcctctaagaca-aaactctgtccctttgagaaT----------------ACAC-AGTGCCACTTGCTTTGCAGG------------------------ACCAGTCCCAGGTAAGAGCTATTACTAATCTAATC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         8099 534 -   1397330 ---GGTGAGAT-------------------------------CTGTG-------------------GGTG--GGCC-----------------------------CCAGAAGAAAAC----AGAGGGCCTTCTCCCTGCCCCTAGAG------CCA-CAGCA---TTCTCAAGGAGGTCCAGAGGCTACCTGAAAGA-CCCTTTACTCTAAG-----AGCCAA-CAGGGACC---------TCAATGCCTCC-CATTTT-TCCAGTGTGATCTTCCTTCAACACACACCTGAC---CGTGTGGTATCCCCATTTACA------------------------------------------------AC----TCT-------------------ACAACTTTTACCCAATGT-----------------------ACCATACCA-TTT---TC------TGTTTTCACAACCCCTTCCT----ATCACTCAAAAACACCAtttctcaatcttggcaatgtagacatcctgggctggaca-ttctttgttaca---gggagctgtcctgtgcattgcagaaagtttagcaacatccttggcctctatccattagaagttagcagg--tatccc-cttgctatgagaaccaa------aacaatgtgtctggacattgccaaatgtgctctaagaca-aaactctgtccctttgagaaT----------------ACAC-AGTGCCACTTGCTTTGCAGG------------------------ACCAGCCCCAGGTAAGAGCTATTACTAATGTAATC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        31768 534 -   1784207 ---GGTGAGA---------------------------------TGTG-------------------GGTG--GGCC-----------------------------CCAGAAGAAAAC----AGAGGGCCTTCTCCCTGCCCCTAGAG------CCA-CAGCA---TTCTCAAGGAGGTCCAGAGGCTACCTGAAAGACCCCTTTACTCTAAG-----AGCCAA-CAAGGGCC---------TCAATACCTCC-CACTTT-TCCAGTGTGATCTTCCTTCAACACACACCTGAC---TGTGTGGTATCCCCACTTACA------------------------------------------------AC----TCT-------------------ACGACTTTTACCCAATGT-----------------------ACCATACCATTTT---TC------TGTTTTCACAACCCCTTCCT----ATCACTCAAAAACACCAtttctcaatcttggtaatgcagacatcctgagctggaca-ttctttgttaca---gggagctgtcctgtgcatcgcagaaagtttagcaacatccttggcctctatccattagaagttagcagg--tatccc-cttgctatgagaaccaa------aacaacgtgtctggacattgccaaatgtcctctaagaca-aaactctgtccctttgagCAT----------------ACAC-AGTGCCACCTGCTTTGCAGG------------------------ACCAGCCTCAGGTAAGAGCTATTACTAATCTAATC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22228507 507 + 158406734 ---GGTAAGAT-------------------------------CTGTG-------------------AGTG--GACC-----------------------------CCAGAAG-AAAC----AGAAGGACTTCTT---GCCCCTAGAG------CCA-CAGCA---CTCTCAA--AGGTCTAGGAG--ACCTGAAGGA-CCATTTACTCTAAG-----AACCAC-CAGGGACC---------TCAATG----------------------------CTTCAACACACACCTGAC---TATGTGGCACCCCCACTTAAA------------------------------------------------ACTCCATCT-------------------ATGACTTTTACCCAACGT-----------------------ACCATACCA-TTT---TTCCTCCATGTTTTCACATCCCCTTCCTGTCAATCACTCTAAAACACCAtttctcaatcttgccaatgtacacctcctgagatggaca-ttctttgttat----gggggctgtcgtgtgcattgcagaaagtttagcaagttccttggcctctacccattagaatttagcagg--tatccc-cttgctatgacaaacaa------a--aatgtatctggacattgccaaatgtcttttaaggca-gaattctatccctttgagaaT----------------ACAC-AGTGC----TACTTTCCAGG------------------------ACCAGCCCCAGGTAAGACCTATCACTAATCTAATC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50464848 506 +  54856640 ---GGTGAGA---------------------------------TGCG-------------------AGTG--GACC-----------------------------CCAGAAG-AAAC----AGACAGCCTTCTT---GACCCTAGAG------CCA-CAGCA---CTCTCAA-GGGGTCTAGGAG--ACCTGAAGGA-TCATTTACTCTAAG-----AACCAC-CAGGGACC---------TCAATG----------------------------CTTCAACACACACCTGAC---CATGTGGCACCCCCACTTACA------------------------------------------------ACTCCATCT-------------------ATGACTTTTACCCAACAT-----------------------ACCACTCCA-TTT---TTCCTCCATGTTTTCACAACCCCTTCCTGTCAATCACTCTAAAACACCAtttctcaatcttggcaatgtagacatcctgggatgggca-ttctttgttat----gggggctgtcgtgtgcactgcagtaagtttagcaagttccttggcctctacccattagaatttagcagg--tatgcc-cttgctatgacaaccaa------a--aatgtatctggacattgccaaatgccttttaaggca-gaattctatccctttgagaaT----------------ACAC-AGTGC----TACTTTCCAGG------------------------ACCAGCCCCAGGTAAGACCTATCACCAATCTAATC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       608265 507 -   2910086 ---GGTGACAT-------------------------------GTGTG-------------------AGTG--GACC-----------------------------CCAGAAG-AAAC----AGAAGGCCTTCTT---GCCCCTAGAG------CCA-CAGCA---CTCTCAA-GGGGACTAGGAG--ACCTGACGGA-CCATGTACTCTAAG-----AACCAC-CAGGGACC---------TCAATG----------------------------CTTCCACGCCTACCTGAC---CATGTGGCACCCCCACTTACA------------------------------------------------ACTCCATCT-------------------ATGACTTTTACCCAACAT-----------------------ACCATGCCA-TTT---TTCCTCCATGTTTTCACAACCCCTTCCTGTCAATCACTCTGAAACACCAtttctcaatcttggcaatgtagacaacctgggatggaca-ttctttg-tat----gggggttgtcgtgtgcattgcagaaagtttatcaagttccttggcctctacccattagaatttagcagg--tatccc-cttgctatgacaaccaa------a--aatgtatctggacattgccaaatgtcttttaaggca-gaattctatccctttgagaaT----------------ACAC-AGTGC----TACTTTTCAGG------------------------ACCAGCCCCAGGTAAGACCTATCACTAATCTAATC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40630994 507 +  42888418 ---GGTGAGAT-------------------------------CCCTG-------------------AGTG--GACC-----------------------------CCAGAAG-AAAC----AGAAGGCCTTCTT---GCCCCTAGAG------CCA-CAGCA---CTCTCAA-GGGGTCTAGGAG--ACCTGAAGGA-CCATTCACTCTAAG-----AACCAC-CAGGGACC---------TCAATG----------------------------CTTCAACACACACCTGAC---CATGTGGCACCCTCACTTACA------------------------------------------------ACTCCATCT-------------------ATGACTTTTACCCAAAGT-----------------------ACCATGCCA-TTT---TTCCTCCATGTTTTCACAATCCCTTCCTGTCAATCACTCTAAAACACCAtttctcaatcttggcaatgtagacttcctgggatggaca-ttctttgttat----gggggctgtcgtgtgcattgcacaaagtttagcaagttccttggcctctacccattataatttaa-agg--tatccc-cttgctatgacaaccaa------a--aatgtatctggacattgccaaatgtcttttaaggca-gaattctatccctttgagaaT----------------ACAC-AGTGC----TACTTTCCAGG------------------------ACCAGCCCCAGGTAAGACCTATCACTAATCTAATC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             623858 595 -  36342412 ---AGTGAGGTCTTCCTACACAGCCCTAGTGCCACAACCAAGCTGTG-------------------GGTGTTGGCCTCTACCAGCTGGGGGAAGGCTAGCAGGAACCAGAAG-AAAT----AGAGGGGGTTCTTCCTGGCCCTGGAG------CTGTTAACA---TTCTCAA-AGCATCTACTCAAGATCTGAGGGA-CTCCTCGCTTCCAGTGGCCAGCTAC-CAGGGCCCCTACATGCATCAACACCTCC-CATTTTCTCTGGGGCAATCTTTC-----AACACACCCAAC---CACATGGTG-CCCAACACAGT------------------------------------------------CC----CCT-------------------GTGACTTTTACCCATCAC-----------------------ACCATGATG-TTT---TA-CTCCTTATTTTCACAACCTCTTCAT----ATCACTCTAAAAAagggtctctcaatcttgccactatcaacattctaggctggata-----ttgttatagtgggtggttgtcttgggcagtgtataaagtttagcagaatgcctggcctctccctatcagttatcagcaagatttgccc-ctagctataatgaccaa------a--aatg--tctagatattgtcaaatgtactctatggca-aaaATCTGTCCATTTGACAAT----------------ATACAAGTGCCACTTCCTTT------------------------------------CCAGGTAAGAGTTATCACTAACCAACTG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54400648 406 +  91889043 ---GGTGAGAG-------------------------------CTGTG-------------------ATTA--GTCC-----------------------------CAGGAGC-------------------------ACCGCCTGGG------ACA-GGGCAGGTCTGTCCA-CTAGCCTGGGGCCAGGTTG--GGA-CCCTAT----GGAA-----CTCCAA-CAAGGGCC---------T------------------TC-----------TCCCTGCCCCCAGAGCTCAC---AAGGGGGTCTACC---TGACA------------------------------------------------GC--------------------------------------------------------------------CAAAGGCA-CAT---GC----------------ACCCC-------------------AACAGCCACACCTAA-----------------------------------------------gggtgctgtcctgtaccctgcagggttttcaa-agcatctccggcctctgcccgctaatggctgtcag---cattcc-tcagctccaacaaccaaccaacca--aacgtgtccagacctcccccaatgtcc-cgaaggtc-aaaatctgttcctttgagaatcaccgCTCTCGGCCACATAC-AGTGCCATTTCCTTTCCAGG------------------------GCCAGACCCATGTAGGAAGAGTCACTAATGCAACT
i canFam3.chr3              I 5 C 0
s dasNov3.JH570731            1790027 651 +   3943991 CGCGACGACAG-------------------------------CAGAGCCCCAGGCCCCACCAGGCTAGGG--GGGA-----------------------------CCAGTGTCAAACCAAAAGAGGACCTTCAA---GACACCAAAAGTCTACTCT-CCCCT---TCCCCAAAGTAGT---------AACTCAGGGA-CGTCTTGCCCCTTT-----AGCCAGTCATTGGAG---------GCAATGCCTCCACTTTCT-TTCAGTGTGAT----CTTCAGCACAAACCTGAC---CACATGGTACCCCAAGTTACACTGTCCCTGACCTGCCTTCTGTATCCTCCATGCATTTACACACTTTTCAC----TTTTGTGGGAAATCTACTTGGAATGCCTCTTACCCTGTCTCCCAAATAGCTCAGGGATGCAAGATCATGCTG-TCT---TT------GTCTTCCCCAACCCCTTCAG----ATCACTCTTGTGCAGT-TTTCCCGG---TGGTTTtactgacat-ctgtgctggataattctttg----a---gggggctgccctgtgcactattccatgtttagcagcatccctggccacta------------------g--tacctcaccagctgtgacaaccaa------a--aatgtctccagacattacc-aatgtcccctaagggacgaaatctatcactctgagaactactgCCCCAGG----ACAC-AATGCCAATTCCTTTCTAGGCACTGTGAAGGACATTCTTAGGGACCCAGACTCAGGTAAGAGACACTACTAATCTAGTA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113261732 764 + 116334831 I
e proCoq1.NW_012142813v1         6566 751 +     80520 I
e mm10.chr7                  81342884 826 + 145441459 I

a score=18989.000000
s hg38.chr15_KI270850v1_alt    326544 2 +    430880 AA
s panTro5.chr15              63479956 2 +  83230942 AA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80437342 2 +  99763055 AA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        37196 2 -   1709092 AA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17188778 2 - 121039945 AA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60877592 2 + 169600520 AA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108404298 2 - 171882078 AA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        14774 2 -   2311642 AA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        12932 2 -   1987038 AA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21093440 2 -  24206276 AA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         8633 2 -   1397330 AA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        32302 2 -   1784207 AA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22229014 2 + 158406734 AA
i calJac3.chr6              C 0 I 17
s saiBol1.JH378108           50465354 2 +  54856640 AA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       608772 2 -   2910086 AA
i cebCap1.NW_016107610v1    C 0 I 17
s aotNan1.NW_018505940v1     40631501 2 +  42888418 AA
i aotNan1.NW_018505940v1    C 0 I 18
s otoGar3.GL873530             624453 1 -  36342412 A-
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH570731            1790678 2 +   3943991 AA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113261732 764 + 116334831 I
e proCoq1.NW_012142813v1         6566 751 +     80520 I
e mm10.chr7                  81342884 826 + 145441459 I
e canFam3.chr3               54401054 0 +  91889043 C

a score=115366.000000
s hg38.chr15_KI270850v1_alt    326546 15 +    430880 CATTTGTGAAGGGCC-
s panTro5.chr15              63479958 15 +  83230942 CATTTGTGAAGGGCC-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80437344 15 +  99763055 CATTTGTGAAGGGCC-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        37198 15 -   1709092 CATTTGCGAAGGGCC-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17188780 15 - 121039945 CATTTGTGAAGGGCC-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60877594 15 + 169600520 CGTTTGTGAAGGGCC-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108404300 15 - 171882078 CGTTTGTGAAGGGCC-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        14776 15 -   2311642 CGTTTGTGAAGGGCC-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        12934 15 -   1987038 CATTTGTGAAGGGCC-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21093442 15 -  24206276 CATTTGTGAAGGGCC-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         8635 15 -   1397330 CATTTGTGAAGGGCC-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        32304 15 -   1784207 CATTTGTGAAGGGCC-
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50465356 14 +  54856640 -ATTGGGGAGGGGAG-
i saiBol1.JH378108          C 0 I 7
s otoGar3.GL873530             624454 15 -  36342412 CATTTGTAAAGGGCC-
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH570731            1790680 16 +   3943991 CATTTGTAAAGTGTCC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113261732 764 + 116334831 I
e proCoq1.NW_012142813v1         6566 751 +     80520 I
e aotNan1.NW_018505940v1     40631503 18 +  42888418 I
e mm10.chr7                  81342884 826 + 145441459 I
e calJac3.chr6               22229016 17 + 158406734 I
e canFam3.chr3               54401054  0 +  91889043 C
e cebCap1.NW_016107610v1       608774 17 -   2910086 I

a score=10500.000000
s hg38.chr15_KI270850v1_alt    326561 1 +    430880 C
s panTro5.chr15              63479973 1 +  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80437359 1 +  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        37213 1 -   1709092 C
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17188795 1 - 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60877609 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108404315 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        14791 1 -   2311642 C
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        12949 1 -   1987038 C
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21093457 1 -  24206276 C
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         8650 1 -   1397330 C
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        32319 1 -   1784207 C
i colAng1.NW_012117110v1    C 0 C 0
s aotNan1.NW_018505940v1     40631521 1 +  42888418 C
i aotNan1.NW_018505940v1    I 18 C 0
s otoGar3.GL873530             624469 1 -  36342412 C
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH570731            1790696 1 +   3943991 C
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113261732 764 + 116334831 I
e proCoq1.NW_012142813v1         6566 751 +     80520 I
e mm10.chr7                  81342884 826 + 145441459 I
e calJac3.chr6               22229016 17 + 158406734 I
e canFam3.chr3               54401054 0 +  91889043 C
e cebCap1.NW_016107610v1       608774 17 -   2910086 I
e saiBol1.JH378108           50465370 7 +  54856640 I

a score=909808.000000
s hg38.chr15_KI270850v1_alt    326562 82 +    430880 AAGTACACAAGGCATCAAGCAGAAGGGAGGGAGGCAAGAGCAGACCCTGCCCTCAAACAAGTTCAGGCT----------------------GGT---AGGCAGGGCA
s panTro5.chr15              63479974 82 +  83230942 AAGTACACAAGGCATCAAGCAGAAGGGAGGGAGGCAAGAGCAGACCCTGCCCTCAAACAAGTTCAGGCT----------------------GGT---AGGCAGGGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80437360 82 +  99763055 AAGTACACAAGGCATCAAGCAGAAGGGAGGGAGGCAAGAGCAGACCCTGCCCTCAAACAAGTTCAGGCT----------------------GGT---AGGCAGGGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        37214 81 -   1709092 AAGTACACAAGGCATCAAGCAGAAGGGAGGGAGGC-AGAGCAGACCCTGCCCTCAAACAAGTTCAGGCT----------------------GGT---AGGCAGGGCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17188796 82 - 121039945 AAGTACACAAGGCATCAAGCAGAAGGGAGGGAGGCAAGTGCAGACCCTGCCCTCAAACAAGTTCAGGCT----------------------GGT---AGGTAGGGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60877610 82 + 169600520 AAGTACACAAGGCACCAAGCAGAAGGGAGGGAGGCAAGAGCAGACCCTGCCCTCGCACAAGCTCAGGCT----------------------GGT---GGGCAGGGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108404316 82 - 171882078 AAGTACACAAGGCACCAAGCAGAAGGGAGGGAGGCAAGAGCAGACCCTGCCCTCGCACAAGCTCAGGCT----------------------GGT---GGGCAGGGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        14792 82 -   2311642 AAGTACACAAGGCACCAAGCAGAAGGGAGGGAGGCAAAAGCAGACCCTGCCCTCGCACAAGCTCAGGCT----------------------GGT---GGGCAGGGCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        12950 82 -   1987038 AAGTACACAAGGCACCAAGCAGAAGGGAGGGAGGCAAGAGCAGACCCTGCCCTCGCACAAGCTCAGGCT----------------------GGT---GGGCAGGGCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21093458 82 -  24206276 AAGTACACAAGGCACCAAGCAGAAGGGAGGGAGGCAAGAGCAGACCCTGCCCTCGCACAAGCTCAGGCT----------------------GGT---GGGCAGGGCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         8651 82 -   1397330 AAGTACACAAGGCACCAAGCAGAAGGGAGGGAGGCAAGAGCAGACTCTGCCCTCGCACAAGCTCAGGCT----------------------GGT---GGGCAGGGCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        32320 82 -   1784207 AAGTACACCAGGCACCAAGCAGAAGGGAGGGAGGCAAGAGCAGACCCTGCCCTCACACAAGCTCAGGCT----------------------GGT---GGGCAGGGCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22229033 85 + 158406734 AAGTACCCAGGGCACCAAGCAGAAGGGACGGAGGCAAGAACAGACCCTGCCCTCACACAAGCTCAGGCT----------------------GGTGGGGGGAGGGGCA
i calJac3.chr6              I 17 C 0
s saiBol1.JH378108           50465377 82 +  54856640 AAGTACACAAGGCACCAAGCAGAAGGGAGGGAGGCAAGAGCAGACCCTGCCCCCACACAAGCTCAGGCT----------------------GGT---GGGCGGGGCA
i saiBol1.JH378108          I 7 C 0
s cebCap1.NW_016107610v1       608791 82 -   2910086 AAGTACACAAGACACCAAGCAGAAGGGGGGGAGGCAAGAGCAGACCCTGCCCTCACACAAGCTCAGGCT----------------------GGT---GGGCGGGGCA
i cebCap1.NW_016107610v1    I 17 C 0
s aotNan1.NW_018505940v1     40631522 82 +  42888418 AAGCACACAAGGCACCAAGCAGAAGGGAGGGAGGCAAGAGCAGACCCTGCCCTCACCCAAGCTCAGGCT----------------------GGT---GGGCGGGGCA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             624470 99 -  36342412 AAATAGACAAGGCGCCAAGGAGAGTAGAG---GTCAAGAGCAAGGCTGACC--CAAGCAAGCTCAGGCTTGCCAGTGGGATTTTTTTTGGGGGG---AGGGGGGGCa
i otoGar3.GL873530          C 0 I 251
s dasNov3.JH570731            1790697 74 +   3943991 ATGTGCACAAGGCACCATGCAGC--GTAGGAGGGAAAGATCAGGGGCTACCTTTATGCGAG------------------------------GGT-ATGAGTAGGGCA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113261732 764 + 116334831 I
e proCoq1.NW_012142813v1         6566 751 +     80520 I
e mm10.chr7                  81342884 826 + 145441459 I
e canFam3.chr3               54401054  0 +  91889043 C

a score=45875.000000
s hg38.chr15_KI270850v1_alt    326644 4 +    430880 -AGAA
s panTro5.chr15              63480056 4 +  83230942 -AGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80437442 4 +  99763055 -AGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        37295 4 -   1709092 -AGAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17188878 4 - 121039945 -AGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60877692 4 + 169600520 -AGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108404398 4 - 171882078 -AGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        14874 4 -   2311642 -AGAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        13032 4 -   1987038 -AGAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21093540 4 -  24206276 -AGAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         8733 4 -   1397330 -AGAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        32402 4 -   1784207 -AGAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22229118 4 + 158406734 -AGAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50465459 4 +  54856640 -AGAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       608873 4 -   2910086 -AGAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40631604 4 +  42888418 -AGAA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             624820 3 -  36342412 --AAA
i otoGar3.GL873530          I 251 C 0
s dasNov3.JH570731            1790771 5 +   3943991 AAGAA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113261732 764 + 116334831 I
e proCoq1.NW_012142813v1         6566 751 +     80520 I
e mm10.chr7                  81342884 826 + 145441459 I
e canFam3.chr3               54401054 0 +  91889043 C

a score=766873.000000
s hg38.chr15_KI270850v1_alt    326648 71 +    430880 GCC-AAGGGCCCAACTTATACCTGGAACTCCATGTC-----CTATTTGGTCCTCAGAAACCCATTT-TAGTTTCAACA----
s panTro5.chr15              63480060 70 +  83230942 GCC-AAGGGCCCAACTTATACCTGGAACTTCATGTC-----CTATTTGGTCCTCAGAAACCCATTT--AGTTTCAACA----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80437446 70 +  99763055 GCC-AAGGGCCCAACTTATACCTGGAACTTCATGTC-----CTATTTGGTCCTCAGAAACCCATTT--AGTTTCAACA----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        37299 71 -   1709092 GCC-AAGGGCCCAACTTATACCTGGAACTTCATGTC-----CTATTTGGTCCTCAGAAACCCATTT-TAGTTTCAACA----
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17188882 72 - 121039945 GCCAAAGGGCCCACCTTATACCTGGAACTTCATGTC-----CTATTTGGTCCTCAGAAACCCATTT-TAGTTTCAACA----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60877696 72 + 169600520 GCCAAAGGGCCCACCTTATACCTGGAACTTCATGTC-----CTATTTGGTCCTCAGAAACCCATTT-TAGTTTCAACA----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108404402 72 - 171882078 GCCAAAGGGCCCACCTTATACCTGGAACTTCATGTC-----CTATTTGGTCCTCAGAAACCCATTT-TAGTTTCAACA----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        14878 72 -   2311642 GCCAAAGGGCCCACCTTATACCTGGAACTTCATGTC-----CTATTTGGTCCTCAGAAACCCATTT-TAGTTTCAACA----
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        13036 72 -   1987038 GCCAAAGGGCCCACCTTATACCTGGAACTTCACGTC-----CTATTTGGTCCTCAGAAACCCATTT-TAGTTTCAACA----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21093544 72 -  24206276 GCCAAAGGGCCCACCTTGTACCTGGAACTTCATGTC-----CTATTTGGTCCTCAGAAACCCATTT-TAGTTTCAACA----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         8737 72 -   1397330 GCCAAAGGGCCCACCTTATACCTGGAACTTCATGTC-----CTATTTGGTCCTCAGAAACCCATTT-TAGTTTCAACA----
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        32406 72 -   1784207 GCCAAAGGGCCCACCTTGTACCTGGAACTTCATGTC-----CTATTTGGTCCTCAGAAACCCATTT-TAGTTTCAACA----
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22229122 68 + 158406734 GCCAAAGGGCCCAACTTGTTCGTAGAACTT----TC-----CTATTCGGTTCTCAAAAACCCATTT-TAGTTTCCACA----
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50465463 68 +  54856640 GCCAAAGGGTCCAACTTATTTGTAGAACTT----TC-----CTATTTGGTTCTCAAAAACCCATTT-TAGTTTCAACA----
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       608877 68 -   2910086 GCCAAAGGGCCCAACTTGTTCATAGAACTT----TC-----CTATTTGGTTCTCAAAAACCCATTT-TAGTTTCAACA----
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40631608 68 +  42888418 GCCAAAGGGCCCAACTTGTTCGTAGAACTT----TC-----CTATTTGGTTCTCAAAAACCCATTT-TAGTTTCAACA----
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             624823 72 -  36342412 GCCCAAGGGTTCACTGTGTACATGGAACTTAATGTC-----CTATTTGATCCTTAGAAACTCATTT-TATACCTCAAA----
i otoGar3.GL873530          C 0 I 2
s canFam3.chr3               54401054 76 +  91889043 GCC-AAGGGCCTGACACATGCA-GGAATCCAATGTCCCCCTCTATTTTATCCCCCAAAGCCAATTTATAGATGAAACT----
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1790776 67 +   3943991 -CCCAAGGGCCCACCACGTGCCTGGCATTTTATGTC-----CCACCTGAGCCTCTAAAACCCATTT---------ACAATCA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113261732 764 + 116334831 I
e proCoq1.NW_012142813v1         6566 751 +     80520 I
e mm10.chr7                  81342884 826 + 145441459 I

a score=665907.000000
s hg38.chr15_KI270850v1_alt    326719 43 +    430880 AAAATGCTGCATTCAGCGCAGTGGTTATTTCAGGAAgaaaaga
s panTro5.chr15              63480130 43 +  83230942 AAAAAGCTGCATTCAGCGCAGTGGTTATTTCAGGAAgaaaaga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80437516 43 +  99763055 AAAAAGCTGCATTCAGCGCAGTGGTTATTTCAGGAAgaaaaga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        37370 43 -   1709092 AAAAAGCTGCATTCAGCGCAGTGGTTATTTCAGGAAgaaaaga
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17188954 43 - 121039945 AAAAAGCTGCATTCAGCGCAGTGGTTATTTCAGGAAgaaaaga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60877768 43 + 169600520 AAAAAGCTGCATACAGCGCAGTGGTTATTTCAGGAggaaaaga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108404474 43 - 171882078 AAAAAGCTGCATTCAGTGCAGTGGTTATTTCAGGAGGAAAAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        14950 43 -   2311642 AAAAAGCTGCATTCAGCGCAGTGGTTATTTCAGGAGGAAAAGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        13108 43 -   1987038 AAAAAGCTGCATTCAGCGCAGTGGTTATTTCAGGAggaaaaga
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21093616 43 -  24206276 AAAAAGCTACATTCAGCGCAGTGGTTATTTCAGGAGGAAAAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         8809 43 -   1397330 AAAAAGCTGCATTCAGCGCAGTGGTTATTTCAGGAggaaaaga
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        32478 43 -   1784207 AAAAAGCTGCATTCAGCGCAGTGGTTATTTCAGGAggaaaaga
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22229190 43 + 158406734 AAAAAGCTGCATTCAGCACAGTGGCTATTTCAGAAggaaaaga
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50465531 43 +  54856640 AAAAAGCTGCATTCAGCACAGTGGTTATTTCAGGAggaagaga
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       608945 43 -   2910086 AAAAAGCTGCATTCAGCACAGTGGTTATTTCAGGAGGAGAAGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40631676 43 +  42888418 ATAAAGCTGCATTCAGTACAGTGGTTATTTCAGGAggaaaaga
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113262496 43 + 116334831 AAAAAGCTGCATTCAGGACAGTGGTTATTTCAGGAGGAAAAGA
i micMur3.chr9              I 764 I 379
s proCoq1.NW_012142813v1         7317 43 +     80520 AAAAAGCTGCATTCAGGACAGTGGTTATTTCAGGAGGAAAAGA
i proCoq1.NW_012142813v1    I 751 C 0
s otoGar3.GL873530             624897 42 -  36342412 AAAAAGATAAATTCACATCAGTGGTTATTTCAGgagaaaaaa-
i otoGar3.GL873530          I 2 C 0
s canFam3.chr3               54401131 43 +  91889043 AAAAAGTTGCATTCAGGACAGTGGTTACTTCTGAAGCAAACGA
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1790843 32 +   3943991 ---AAACTAATAAAAGTGCA--------TTCAGGAAGAAATGA
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81342884 826 + 145441459 I

a score=6890.000000
s hg38.chr15_KI270850v1_alt    326762 1 +    430880 c
s panTro5.chr15              63480173 1 +  83230942 c
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80437559 1 +  99763055 c
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        37413 1 -   1709092 c
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17188997 1 - 121039945 c
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60877811 1 + 169600520 c
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108404517 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        14993 1 -   2311642 C
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        13151 1 -   1987038 c
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21093659 1 -  24206276 T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         8852 1 -   1397330 c
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        32521 1 -   1784207 c
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22229233 1 + 158406734 t
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50465574 1 +  54856640 t
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       608988 1 -   2910086 T
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40631719 1 +  42888418 t
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1         7360 1 +     80520 C
i proCoq1.NW_012142813v1    C 0 I 442
s otoGar3.GL873530             624939 1 -  36342412 c
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54401174 1 +  91889043 T
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1790875 1 +   3943991 T
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113262539 379 + 116334831 I
e mm10.chr7                  81342884 826 + 145441459 I

a score=1570043.000000
s hg38.chr15_KI270850v1_alt    326763 152 +    430880 --ccacagcggggctgtagctgtactggtgatgtttttctgaagctg---ggaaagt--------acatgtgag-ttcattttgct-----------a--------ctacctttttgagtgtcttaaacatTTAATGACCATAAAAATAGGAAAAATGAAGTTGTTCAAAATCACCAACCGCCCA-
s panTro5.chr15              63480174 152 +  83230942 --ccacagtggggctgtagctgtactggtgatgtttttctgaagctg---ggaaagt--------acatgtgag-ttcattttgct-----------a--------ctaccttttTGAGTGTCTTAAACATTTAATGACCATAAAAATAGGAAAAATGAAGTTGTTCAAAATCACCAACCGCCCA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80437560 152 +  99763055 --ccacagcggggctgtagctgtactggtgatgtttttctgaagctg---ggaaagt--------acatgtgag-ttcattttgct-----------a--------ctacctttttgagtgtcttaaacatttaatGACCATAAAAATAGGAAAAATGAAGTTGTTCAAAATCACCAACCGCCCA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        37414 152 -   1709092 --ccacagcggggctgtagctgtactggtgatgtttttctgaagctg---ggaaagt--------acatgtgag-ttcattttgct-----------a--------ctaccttttTGAGTGTCTTAAACATTTAATGACCATAAAAATAGGAAAAATGAAGTTGTGCAAAATCACCAACCGCCCA-
i gorGor5.CYUI01015556v1    C 0 I 8
s nomLeu3.chr6               17188998 152 - 121039945 --ccacagcggggctgtagctgtactggtgatgtttttctgaagctg---ggaaagt--------acacgtgag-ttcattttgct-----------a--------ttaccttttTGAGCGTCTTAAACATTTAATGACCATAAAAATAGGATAAATGAAGTTGTTCAAAATCGCCAACCGCCCA-
i nomLeu3.chr6              C 0 I 942
s rheMac8.chr7               60877812 152 + 169600520 --ccacagc-aggctgtgcctgtactggtgatgtttttctgaagctg---ggaaagc--------acatgtgag-ttcattttgct-------a---a--------ttaccttttTGAGTGCCTTAAACATTTAATGACTATAAAAATAAGAAAAATGAAGTTGTTCAAAATCACCAACTGCCCA-
i rheMac8.chr7              C 0 I 319
s macFas5.chr7              108404518 152 - 171882078 --CCACAGC-GGGCTGTGCCTGTACTGGTGATGTTTTTCTGAAGCTG---GGAAAGC--------ACATGTGAG-TTCATTTTGCT-------A---A--------TTACCTTTTTGAGTGCCTTAAACATTTAATGACTATAAAAATAGGAAAAATGAAGTTGTTCAAAATCACCAACTGCCCA-
i macFas5.chr7              C 0 I 318
s macNem1.NW_012011945v1        14994 152 -   2311642 --CCACAGC-GGGCTGTGCCTGTACTGGTGATGTTTTTCTGAAGCTG---GGAAAGC--------ACATGTGAG-TTCATTTTGCT-------A---A--------TTACCTTTTTGAGTGCCTTAAACATTTAATGACTATAAAAATAGGAAAAATGAAGTTGTTCAAAATCACCAACTGCCCA-
i macNem1.NW_012011945v1    C 0 I 321
s cerAty1.NW_012002657v1        13152 152 -   1987038 --ccacagc-gggctgtgcctgtactggtgatgtttttctgaagctg---ggaaagc--------acatgtgag-ttcattttgct-------a---a--------ttaccttttTGAGTGCCTTAAACATTTAATGACTATAAAAATAGGAAAAATGAAGTTGTTCAAAATCACCAACTGCCCA-
i cerAty1.NW_012002657v1    C 0 I 313
s chlSab2.chr29              21093660 152 -  24206276 --CCACAGC-GGGCTGTGCCTGTACTGGTGATGTTTTTCTGAAGCTG---GGAAAGT--------ACATGTGAG-TTCATTTTGCT-------A---A--------TTACCTTTTTGAGTGCCTTAAACATTTAATGACTATAAAAATAGGAAAAATGAAGTTGTTCAAAATCACCAACTGCCCA-
i chlSab2.chr29             C 0 I 304
s manLeu1.NW_012106908v1         8853 152 -   1397330 --ccacagc-gggctgtgcctgtactggtgatgtttttctgaagctg---ggaaagc--------acatgtgag-ttcattttgct-------a---a--------ttaccttttTGAGTGCCTTAAACATTTAATGACTATAAAAATAGGAAAAATGAAGTTGTTCAAAATCACCAACTGCCCA-
i manLeu1.NW_012106908v1    C 0 I 313
s colAng1.NW_012117110v1        32522 152 -   1784207 --ccacagc-gggctgtagctgtactggtgatgtttttctgaagctg---ggaaagt--------acatgggag-ttcattttgct-------a---a--------ttaccttttTGAGTGCCTTAAACATTTAATGACCATAAAAATAGGAAAAATGAAGTTGTTCAAAATCACCAACTGCCCA-
i colAng1.NW_012117110v1    C 0 I 9
s calJac3.chr6               22229234 151 + 158406734 --ccacagc-aggctgtagttgtactggtgatgtttttctgaagctg---ggaaggt--------atatgggag-ttcattttgct-----------a--------ttatctctttcaaTGTCTTAAAAATTTAATGACCATAAAAATAGGAAACATGAAGTTGTTCAAAATCAGCAACCGCCCA-
i calJac3.chr6              C 0 I 8
s saiBol1.JH378108           50465575 159 +  54856640 --ccacagc-gggctgtagctgtactggtgatgtttttctgaagctg---ggaagtt--------atagggaag-ttcattttgct-----------attatctctttatctcttTTAATGTTTCAAAAATTTAATGACCATAAAAATAGGAAAAATGAAGTTGTTCAAAATCAGCAACCACCCA-
i saiBol1.JH378108          C 0 I 8
s cebCap1.NW_016107610v1       608989 147 -   2910086 --Ccacagc-aggctgtagctgtactggtgatgtttttccgaagct------aaggt--------acacgggag-ttcattttgct-----------a--------ttatctcttt-aatgtcttaAAAATTTAATGGCCATAAAAATAGGAAAAATAAAGTTGTTCAAAATCAGCAACCCCCCA-
i cebCap1.NW_016107610v1    C 0 I 8
s aotNan1.NW_018505940v1     40631720 151 +  42888418 --ccacagc-aggctgtagctgtactggtgatgtttttctgaagctg---ggaaggt--------atatgggag-ttcattttgct-----------a--------ttatctctttgaaTGTCTTAAAAATTTAATGACCATAAAAATAGGAAAAATGAAGTCGTTCAAAACCAGCAACCGCCCA-
i aotNan1.NW_018505940v1    C 0 I 8
s otoGar3.GL873530             624940 157 -  36342412 --tcaaagc-aggctttaactgcactaatgatgttcttctgaagctaagtggaaggt--------acatgggag-ttcattttgtt-------cttTA--------CCGTCTTTTTGAAAATCCTAAATATTTAATGAGCA-AAGGAAAGGAAAAATGAAGTTGCTCAAAATCACCAACAGTTTG-
i otoGar3.GL873530          C 0 I 8
s canFam3.chr3               54401175 111 +  91889043 --CCACCAC-AGACTTTAG-----------------------AGCAC---GGA-------------------AG-TTCATTCTGTT-------C---A--------TTACCTC--TGAATGT----AACATTTCATGATCATAAATA-AGAAAAAATAAAGCTGCTTTAAATCGTGTATTGGACT-
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1790876 128 +   3943991 CCATATAGC-AGGCTTTGGCTGTGTGGACAATGGTTTTCTGAAGATA---GATGGGTGGTGGGACACATGGAGGCTCCatttttttttttaaaa---a--------ttatCT-TTTGCATTCCCTATACAT------------------------------------------GCCTGCCGGACTG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113262539 379 + 116334831 I
e proCoq1.NW_012142813v1         7361 442 +     80520 I
e mm10.chr7                  81342884 826 + 145441459 I

a score=1877749.000000
s hg38.chr15_KI270850v1_alt    326915 197 +    430880 TGAAGCCC--ATGCT--TTCACCCAAGTATGCAAAAGGACT-AAGA-------TAAGCCATAGAAAAA----ACATCAAAGTGCAATGAAGATACTCGTGAACTA---------------C-CTAAGTAGTGCCTTGTATG-TACCTGGAAATG-GACCAAAGCTCATTTCTGAGTGGTTAGCATGGAGACACCAAAGGAATGCCTTCACAGAAGAAAAGCAGGCAGATT-----C
s panTro5.chr15              63480326 197 +  83230942 TGAAGCCC--ATGCT--TTCACCCAAGTATGCAAAAGGACT-AAGA-------TAAGCCATAGAAAAA----ACATCAAAGTGCAATGAAGATACTCGTGAACTA---------------C-CTAAGCAGTGCCTTGTATG-TACCTGGAAATG-GACCAAAGCTCATTTCTGAGTGGTTAGCATGGAGACACCAAAGGAATGCCTTCACAGAAGAAAAGCAGGCAGATT-----C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80437712 197 +  99763055 TGAAGCCC--ATGTT--TTCACCCAAGTATGCAAAAGGACT-AAGA-------TAAGCCATAGAAAAA----ACATCAAAGTGCAATGAAGATACTCGTGAACTA---------------C-CTAAGCAGTGCCTTGTATG-TACCTGGAAATG-GACCAAAGCTCATTTCTGAGTGGTTAGCATGGAGACACCAAAGGAATGCCTTCACAGAAGAAAAGCAGGCAGATT-----C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        37574 197 -   1709092 TGAAGCCC--ATGCT--TTCACCCAACTATGCAAAAGGACT-AAGA-------TAAGCCACAGAAAAA----ACATCAAAGTGCAATGAAGATACTCGTGAACTA---------------C-CTAAGTAGTGCCTTGTATG-TACCTGGAAATG-GACCAAAGCTCATTTCTGAGTGGTTAGCATGGAGACACCAAAGGAATGCCTTCACAGAAGAAAAGCAGGCAGATT-----C
i gorGor5.CYUI01015556v1    I 8 C 0
s nomLeu3.chr6               17190092 197 - 121039945 TGAAGCCC--ATGCT--TTCACCAAAGTATGCAAAAGGACT-AAGA-------TAAGCCACAGAAAAA----ACATCAAAGTGCAATGAAGATACTCGTGAACTA---------------C-CTAAGTAGTGCCTTGTATG-TACCTGGAAATG-GACCAAAGCTCATTTCTGAGTGGTTAGCATGGAGACACCAAAGGAATGCCTTCACAGAACAAAAGCAGGCAGATT-----C
i nomLeu3.chr6              I 942 C 0
s rheMac8.chr7               60878283 202 + 169600520 TGAAGCCC--ATGCT--TTCACCTAAGTATGCAAAAGGACT-AAGA------TTAAGTCACAGAAGAA----ACATCAAAGTGCAATGAAGATACCC-TGAATTA---------------C-CTAAGTAGTGCCTTGTATG-TACCTGGAAATG-GACCAAAGCTCATTTCTGAGTGGTTAGCATGGAGACACCAAAGGAATACCATCACAGAAGAAAAGCAGGCAGAATGAAGAC
i rheMac8.chr7              I 319 C 0
s macFas5.chr7              108404988 202 - 171882078 TGAAGCCC--ATGCT--TTCACCTAAGTATGCAAAAGGACT-AAGA------TTAAGTCACAGAAGAA----ACATCAAAGTGCAATGAAGATACCC-TGAATTA---------------C-CTAAGTAGTGCCTTGTATG-TACCTGGAAATG-GACCAAAGCTCATTTCTGAGTGGTTAGCATGGAGACACCAAAGGAATACCATCACAGAAGAAAAGCAGGCAGAATGAAGAC
i macFas5.chr7              I 318 C 0
s macNem1.NW_012011945v1        15467 202 -   2311642 TGAAGCCC--ATGCT--TTCACCTAAGTATGCAAAAGGACT-AAGA------TTAAGTCACAGAAGAA----ACATCAAAGTGCAATGAAGATACCC-TGAATTA---------------C-CTAAGTAGTGCCTTGTATG-TACCTGGAAATG-GACCAAAGCTCATTTCTGAGTGGTTAGCATGGAGACACCAAAGGAATACCATCACAGAAGAAAAGCAGGCAGAATGAAGAC
i macNem1.NW_012011945v1    I 321 C 0
s cerAty1.NW_012002657v1        13617 202 -   1987038 TGAAGCCC--ATGCT--TTCACCTAAGTATGCAAAAGGACT-AAGA------TTAAGTCACAGAAGAA----ACATCAAAGTGCAATGAAGATACCC-TGAATTA---------------C-CTAAGTAGTGCCTTGTATG-TACCTGGAAATG-GACCAAAGCTCATTTCTGAGTGGTTAGCATGGAGACACCAAAGGAATACCATCACAGAAGAAAAGCAGGCAGAATGAAGAG
i cerAty1.NW_012002657v1    I 313 C 0
s chlSab2.chr29              21094116 202 -  24206276 TGAAGCCC--ATGCT--TTCACCCAAGTATGCAAAATGACT-AAGA------TTAAGTCACAGAAGAA----ACATCAAAGTGCAATGAAGATACCC-TGAATTA---------------C-CTAAGTAGTGCCTTGTATG-TACCTGGAAATG-GACCAAAGCTCATTTCTGAGTGGTTAGCATGGAGACACCAAAGGAATACCATCACAGAAGAAAAGCAGGCAGAATGAAGAG
i chlSab2.chr29             I 304 C 0
s manLeu1.NW_012106908v1         9318 202 -   1397330 TGAAGCCC--ATGCT--TTCACCTAAGTATGCAAAAGGACT-AAGA------TTAAGTCACAGAAGAA----ACATCAAAGTGCAATGAAGATACCC-TGAATTA---------------C-CTAAGTAGTGCCTTGTATG-CACCTGGAAATG-GACCAAAGCTCATTTCTGAGTGGTTAGCATGGAGACACCAAAGGAATACCATCACAGAAGAAAAGCAGGCAGAATGAAGAG
i manLeu1.NW_012106908v1    I 313 C 0
s colAng1.NW_012117110v1        32683 217 -   1784207 TGAAGCCC--ATGCT--TTCACCCAAGTATGCAAAAGGCCT-AAGA------TTAAGCCACAGAAGAA----ACATCAAAGTGCAATGAAGATACAC-TGAATAGGTACATACAAGGCACC-CTAAGTAGTGCCTTGTATG-TACCTGGAAATG-GACCAAAGTTCATTTCTGAGTGGTTAGCATGGAGACACCAAAGGAATACCATCACAGAAGAAAAGCAGGCAGAATGAAGAG
i colAng1.NW_012117110v1    I 9 C 0
s calJac3.chr6               22229393 198 + 158406734 TGAAGCCC--ATGCT--TTCACCCAAGTATGTAAAAGGACT-AAAA-------TAAGCTACAGAAGAA----ACATCAAAGTGCAATGAAGATACTCATGAACTA---------------C-CTACATACTGCCTTGTATG-TATCTGGAAATG-GACCACAGCTCATTTCTGAGTGGTGAGCATGGAGATACCA----AATGCCACTTCAGAAGGAAAGCGAACAGAATAAGGAC
i calJac3.chr6              I 8 C 0
s saiBol1.JH378108           50465742 202 +  54856640 TGAAGCCC--ATGCT--TTCACCCAAGTATGCAAAAGGACT-AAAA-------CAAGCTACAGAAGAA----ACATCCAAGTGCAACGAAGATACCCGTGAACTA---------------CGTTAAGTAGCGCCTTGTAAG-TATCTGGAAATG-GACCGCAGCTCATTTCTGAGTGGTGAGCATGGAGACCCCAAA-GAATGCTACTTCAAAAGAAAAGCAGGCAGAATAAGGAC
i saiBol1.JH378108          I 8 I 4
s cebCap1.NW_016107610v1       609144 202 -   2910086 TGAAGCCC--ATGCT--TTCACCCAAGTATGCAAAAGGACTAAAAA-------TAAGCTACAGAAGAA----ACATCAAAGTGCAATGAAGATACTCGTGAACTA---------------C-CTAAGTAGTGCCTTGTATG-TATCTGGAAATG-GACCACAGCTCATTTCTGAGCGGTGAGCATGGAGACACCAAA-GAATGCCACTTCAGAAGAAAAGCAGGCAGAATAAGGAC
i cebCap1.NW_016107610v1    I 8 C 0
s aotNan1.NW_018505940v1     40631879 201 +  42888418 TGAAGCCC--ATGCT--TTCACCCAAGTATGCAAAAGGACT-AAAA-------TAAGCTACAGAAGAA----ATATCAAAGTGCAATGAAGATACTCGTGAACTA---------------C-CTAAGTAGGGCCTTGTATC-TATCTGGAAATG-GACCACAGCTCATTTCTGAGTGGTGAGCACAGAGACACCAAA-GAATGCCACTTCAGAAGAAAAGCAGGCAGAATAAGGAC
i aotNan1.NW_018505940v1    I 8 C 0
s otoGar3.GL873530             625105 207 -  36342412 TGAAGCCC--ATGCTACTTCACCAAACAAGGGAAAAGGATT-AAAA-------TAAGCCACAGAAAAGAAGCATGTCGAAGTGGATT---GATACCTGTGAACTA---------------T-CTTAACAGTGCCTGGCACATTATGTGGAAATGAGACCACAGCTCTTTTTTGAAGGGTCACCGTATAGACAGAAAAGGAAAGAATTCTCCAAGGGAACGCAGGTTGCACAAACGG
i otoGar3.GL873530          I 8 C 0
s canFam3.chr3               54401287 146 +  91889043 TGAAGCCACGGTACC--TTCACTGAACTATGTAAAA---CT-AGAG-------AAGCCTCCAGAAGAA----AGCTC-----------------------AACTA---------------T-ACG-----------GTAAG-CATGTGGAAAGG-----AGAGCGCAGTTCTGAGTGGTCAGCATACAGACA-----------------CGGAGTGAAGGCATGAAGGATGAAAAG
i canFam3.chr3              I 1 I 2
s dasNov3.JH570731            1791004  65 +   3943991 TGAAGCCC---------ACCACCT-GGTAAGCAGATGGACG-GAGAACCAGGCTAGCACCCAGAGGAA-----------CGTGCCTT-----------------------------------------------------------------------------------------------------------------------------------------------------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113262539 379 + 116334831 I
e proCoq1.NW_012142813v1         7361 442 +     80520 I
e mm10.chr7                  81342884 826 + 145441459 I

a score=535261.000000
s hg38.chr15_KI270850v1_alt    327112 50 +    430880 AGCCAGGGCTGACACAA---------------------AGGGGGCAAC-GTAAG--CCAGCTATAAAACCAAGA
s panTro5.chr15              63480523 50 +  83230942 AGCCAGGGCTGACACAA---------------------AGGGGGCAAC-GTAAG--CCAGCTATAAGACCAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80437909 50 +  99763055 AGCCAGGGCTGACACAA---------------------AGGGGGCAAC-GTAAG--CCAGCTATAAGAGCAAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        37771 50 -   1709092 AGCCAGGGCTGACACAA---------------------AGGGGGCAAC-GTAAG--CCAGCTATAAAACCAAGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17190289 50 - 121039945 AGCCAGGGCTGACACAA---------------------AAGGGGCAAC-ATAAG--CCAGCTATAAAACCAAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60878485 50 + 169600520 AGCCAGGGCTGACACAA---------------------AGGGGGCAAC-CTAAG--CCAGCCATAAGACCAAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108405190 50 - 171882078 AGCCAGGGCTGACACAA---------------------AGGGGGCAAC-CTAAG--CCAGCCATAAGACCAAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        15669 50 -   2311642 AGCCAGGGCTGACACAA---------------------AGGGGGCAAC-CTAAG--CCAGCCATAAGACCAAGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        13819 50 -   1987038 AGCCAGGGCTGACACAA---------------------AGGGGGCAAC-CCAGG--CCAGCCATAAGACCAAGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21094318 50 -  24206276 AGCCAGGGCTGACACAA---------------------AGGGGGCAAC-CTAAG--CCAGCCATAAGACCAAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         9520 50 -   1397330 AGCCAGGGCTGACACAA---------------------AGGCGGCAAC-CCAGG--CCAGCCATAAGACCAAGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        32900 49 -   1784207 AGCCAGGGCTGACACAA---------------------AGA-GGCAAC-CTAAG--CCAGCCATAAGACCAAGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22229591 52 + 158406734 AGCGAGGGCTGACACAAGG-------------------GGGGGGCAAC-ATATG--CCAGCCACAAAACCAAGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50465948 71 +  54856640 AATAAGGGCTGACACAAGGTGGGGGGTGGGGCACGGCCAGGGGGCAAC-ATAAG--CCAGCCATAAAACCAAGA
i saiBol1.JH378108          I 4 C 0
s cebCap1.NW_016107610v1       609346 65 -   2910086 AGCCAGGGCTGACACAAGGTGGGGAGGTGGG-------GGGGGGCAACTAAAAG--CCAGCCATAAAACCAAGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40632080 54 +  42888418 AGCCAGGGCTGACACAACG----------GG-------GGAGGGCAAC-ATAAG--CCAGCCATAAAACCAAGA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113262918 50 + 116334831 AGCCAGGGTTGAAACAA---------------------AGGGGGCAAT-GCAAG--CCAACCATAGAACCAAGA
i micMur3.chr9              I 379 I 221
s otoGar3.GL873530             625312 47 -  36342412 AGCCAAGGATAAAAGAA---------------------A---GGCAAT-GTGAG--CCAACCACAGAACTAGGA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54401435 52 +  91889043 AACCAGAGCTGGAACCA---------------------TGGAGGCCAA-TGGAGGAGCAGCCACAGGGGCAGGG
i canFam3.chr3              I 2 I 5
s dasNov3.JH570731            1791069 31 +   3943991 ----------GGAACTG---------------------AGGAAAGAAT-GGAAG-----------GAACCAAGA
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1         7361 442 +     80520 I
e mm10.chr7                  81342884 826 + 145441459 I

a score=304405.000000
s hg38.chr15_KI270850v1_alt    327162 31 +    430880 ACAGAA----GCAGCCAAGAGAGAAAAGGTGTCCT
s panTro5.chr15              63480573 31 +  83230942 ACAGAA----GCAGCCAAGAGAGAAAAGGTGTCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80437959 31 +  99763055 ACAGAA----GCAGCCAAGAGAGAAAAGGTGTCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        37821 31 -   1709092 ACAGAA----GCAGCCAAGAGAGAAAAGGTGTCCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17190339 31 - 121039945 ACAGAA----GCAGCCAAGAGAGAAAAGGTGTCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60878535 31 + 169600520 ACAGAA----GCAGCCAAGAGAGAAAAGGTATCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108405240 31 - 171882078 ACAGAA----GCAGCCAAGAGAGAAAAGGTATCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        15719 31 -   2311642 ACAGAA----GCAGCCAAGAGAGAAAAGGTATCCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        13869 31 -   1987038 ACAGAA----GCAGCCAAGAGAGAAAAGGTATCCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21094368 31 -  24206276 ACAGAA----GCAGCCAAGAGAGAAAAGGTATCCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         9570 31 -   1397330 ACAGAA----GCAGCCAAGAGAGAAAAGGTATCCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        32949 31 -   1784207 ACAGAA----GCAGACAAGAGAGAAAAGGTATCCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22229643 31 + 158406734 ACAGAA----GCAGCTGAGAAGGAAAGGGCGTCCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50466019 31 +  54856640 ACAGAA----GCAGCTGAGAGGGAAAGGGCGTCCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       609411 35 -   2910086 ACAGAACCAGCCAGCTGAGAGGGAAAGGGTGTCCT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40632134 31 +  42888418 ACAGAA----GCAGCTGAGAGGCAAAGGGCATCGT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             625359 22 -  36342412 ---GAG----AAAGCTATGGAAGAAGAGA------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54401492 28 +  91889043 ACAGGA----GAG---AAGGGAGGAGGAGAGTCCT
i canFam3.chr3              I 5 I 12
s dasNov3.JH570731            1791100 24 +   3943991 GAAGGA----GTATCCTAGACAGCAAAG-------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113262968 221 + 116334831 I
e proCoq1.NW_012142813v1         7361 442 +     80520 I
e mm10.chr7                  81342884 826 + 145441459 I

a score=409681.000000
s hg38.chr15_KI270850v1_alt    327193 34 +    430880 GGAA--GCCACTAGATTTGGGAATC-------ATGATCTTGTG
s panTro5.chr15              63480604 34 +  83230942 GGAA--GCCACTAGATTTGGGAATC-------ATGATCTTGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80437990 34 +  99763055 GGAA--GCCACTAGATTTGGGAATC-------ATGATCTTGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        37852 34 -   1709092 GGAA--GCCACTAGATTTCGGAATC-------ATGATCTTGTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17190370 34 - 121039945 GGAA--GCCACTAGATTTGGGAATC-------ATGATCTTGCG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60878566 34 + 169600520 GAAA--GCCACTAGATTTGGGAATC-------ATGATCCTGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108405271 34 - 171882078 GAAA--GCCACTAGATTTGGGAATC-------ATGATCCTGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        15750 34 -   2311642 GAAA--GCCACTAGATTTGGGAATC-------ATGATCCTGAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        13900 34 -   1987038 GGAA--GCCACTAGATTTGGGAATC-------ATGATCCTGAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21094399 34 -  24206276 GGAA--GCCACTAGATTTGGGAATC-------ATGATCCTGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         9601 34 -   1397330 GGAA--GCCACTAGATTTGGGAATC-------ATGATCCTGAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        32980 34 -   1784207 GGAA--GCCACTAGATTTGGGAATC-------ATGATCCTGAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22229674 34 + 158406734 GGAA--GCCACTGGATTTGAGAATT-------ACGATCTTGTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50466050 34 +  54856640 GGAA--GCCACTGCATTTCAGAATT-------ACAATCTTGTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       609446 34 -   2910086 GGAA--GCCACTGGATTTCAGAATT-------ATGATCTTGTG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40632165 34 +  42888418 GGAA--GCCACTGGATTTGAGAATT-------ACCATCTTGTG
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1         7803 34 +     80520 GGAG--GCCACTAGGTTTGGGAATT-------ATGATCTTGTG
i proCoq1.NW_012142813v1    I 442 I 189
s otoGar3.GL873530             625381 29 -  36342412 -------CCACCAGATTTAGGAATT-------ACAATCTTGTA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54401532 36 +  91889043 GGAATGGCTACTGGCTCTGGGAGCC-------CTCTTCCTGCG
i canFam3.chr3              I 12 I 2
s dasNov3.JH570731            1791124 39 +   3943991 --AG--GCCACTGGATTCGGAAATTAAAGCTGATGACTGTATG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113262968 221 + 116334831 I
e mm10.chr7                  81342884 826 + 145441459 I

a score=1506887.000000
s hg38.chr15_KI270850v1_alt    327227 156 +    430880 GCG-----------------AACTAACT--CAATGCACACAACTTCC--------G--------CTACACCCCTTAT--GAAAGCAGTCCAGTTTAGTGGCTACAAgtttagatgggattcccaact---ctgccacttact--------------------------------agctgggtga------------ccttg-------------------------g------------------------------------------------------------------------------------------------------ata----------aTA-AGACCT-------------------------------------ACTG----------------------ATGGTTTTTGA-CCAG---------GAAAATA
s panTro5.chr15              63480638 156 +  83230942 GCG-----------------AACAAACT--CAATGCACACAACTTCC--------G--------CTACACCCCTtat--gaaagcagtccagtttagtggctagaagtttagatgggattcccaact---ctgccacttact--------------------------------agctgggtga------------ccttg-------------------------g------------------------------------------------------------------------------------------------------ata----------aTA-AGACCT-------------------------------------ACTG----------------------ATGGTTTTTGA-CCAG---------GAAAATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438024 156 +  99763055 GCG-----------------AACAAACT--CAATGCACACAACTTCC--------G--------CTACACCCCTtat--gaaagcagtccagtttagtggctagaagtttagatgggattcccaact---ctgccacttact--------------------------------agctgggtga------------ccttg-------------------------g------------------------------------------------------------------------------------------------------ata----------aTA-AGACCT-------------------------------------ACTG----------------------ATGGTTTTTGA-CCAG---------GAAAATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        37886 156 -   1709092 GCG-----------------AACAAACT--CAGTGCACACAACTTCC--------G--------CTACACCCCTtat--gaaagcagtccagtttagtggctagaagtttagatgggattcccaact---ctgccacttact--------------------------------agctgggtga------------ccttg-------------------------g------------------------------------------------------------------------------------------------------ata----------aTA-AGACCT-------------------------------------ACTG----------------------ATGGTTTTTGA-CCAG---------GAAGATA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17190404 156 - 121039945 GCG-----------------AGCAAACT--CAATGCACACAACTTCC--------G--------CTACACCCCTTAT--gaaagcagtccagtctagtggctagaagtttagatgggattcccaact---ctgccacttact--------------------------------agctgggtga------------ccttg-------------------------g------------------------------------------------------------------------------------------------------ata----------aCA-AGACCT-------------------------------------ACTG----------------------ATGGCTTTTTA-CCAG---------GGAAATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60878600 156 + 169600520 GCG-----------------AGCAAACT--CAATGCACACAACTTTC--------G--------CTACACCCATtat--gaaagcagtctaatttagtggctagaagtttagatgggattcccaact---ctgccacttact--------------------------------agctgggtga------------ccttg-------------------------g------------------------------------------------------------------------------------------------------ata----------GTA-AGACCT-------------------------------------ACTG----------------------ATGGTTTTTGA-CCAG---------GAAAATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108405305 156 - 171882078 GCG-----------------AGCAAACT--CAATGCACACAACTTTC--------G--------CTACACCCATTAT--GAAAGCAGTCCAatttagtggctagaagtttagatgggattcccaact---ctgccacttact--------------------------------agctgggtga------------ccttg-------------------------g------------------------------------------------------------------------------------------------------ata----------GTA-AGACCT-------------------------------------ACTG----------------------ATGGTTTTTGA-CCAG---------GAAAATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        15784 156 -   2311642 GCG-----------------AGCAAACT--CAATGCACACAACTTTC--------G--------CTACACCCATTAT--GAAAGCAGTCCAATTTACTGgctagaagtttagatgggattcccaact---ctgccacttact--------------------------------agctgggtga------------ccttg-------------------------g------------------------------------------------------------------------------------------------------ata----------GTA-AGACCT-------------------------------------ACTG----------------------ATGGTTTTTGA-CCAG---------GAAAATA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        13934 156 -   1987038 GCG-----------------AGCAAACT--CAATGCACACAACTTTC--------G--------CTACACCCATtat--gaaagcagtctaatttagtggctagaagtttagatgggattcccaact---ctgccacttact--------------------------------agctgggtga------------ccttg-------------------------g------------------------------------------------------------------------------------------------------ata----------GTA-AGACCT-------------------------------------ACTG----------------------ATGGTTTTTGA-CCAG---------GAAAATA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21094433 156 -  24206276 GCG-----------------AGCAAACT--CAATGCACACAACTTTC--------G--------CTACACCCATTAT--GAAAGCAGTCCAATTTAGTGgctagaagtttagatgggattcccaact---ctgccacttact--------------------------------agctgcgtga------------ccttg-------------------------g------------------------------------------------------------------------------------------------------ata----------GTA-AGACCT-------------------------------------ACTG----------------------ATGGTTTTTGA-CCAG---------GAAAATA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         9635 156 -   1397330 GCG-----------------AGCAAACT--CAATGCACACAACTTTC--------G--------CTACACCCATtat--gaaagcagtctaatttagtggctagaagtttagatgggattcccaact---ctgccacttact--------------------------------agctgggtga------------ccttg-------------------------g------------------------------------------------------------------------------------------------------ata----------TTA-AGACCT-------------------------------------ACTG----------------------ATGGTTTTTGA-CCAG---------GAAAATA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        33014 156 -   1784207 GCG-----------------AGCAAACT--CAATGCACACAACTTTC--------G--------CTACACCCATTAT--gaaagcggtccaatttaggggctagaagtttagatgggattcccaact---ctgccacttact--------------------------------agctgggtga------------ccttg-------------------------g------------------------------------------------------------------------------------------------------ata----------GTA-AGACCT-------------------------------------ACTG----------------------ATGGTTTTTGA-CCAG---------GAAAATA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22229708 159 + 158406734 GTG-----------------AGCAAACT-CCAATGCAAACGACTTTC--------A--------CTACACCCATTAT--GAAAGCAGTCCAGTTTACTGGCTAGAAGTTTAGATGGGATTTCCAACTTTGCTGCCACTTACT--------------------------------GG-AGGGTGC------------CCTTG-------------------------G------------------------------------------------------------------------------------------------------ATA----------ATA-AGAACT-------------------------------------ACTG---------------------AATGGTTTTTGA-TCAG---------GG-AATA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50466084 160 +  54856640 GTG-----------------AGCAAACT--CAATGCAAACAACTTTT--------G--------CTATACCCACTAT--GAAAGCAGTCCAGTTTACTGgctagaagtttagatgagatttccaactttgctgccacttact--------------------------------agccaggtgc------------ccttg-------------------------g------------------------------------------------------------------------------------------------------ata----------aTA-AGAACT-------------------------------------ACTG---------------------AATGGTTTTTGA-CCAG---------GGAAATA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       609480 144 -   2910086 GTG-----------------AA-AAACT--CAATGCAAACAACTTTA--------G--------CTATACCCATTAT--GAAAGCAGTCCAGTTTATTGgctagacgtttagatgggatttccaactttgctgccacttact--------------------------------agttgggtgc------------ccttg-------------------------g------------------------------------------------------------------------------------------------------aga----------aTA-AGAACT-------------------------------------AC-------------------------------------CAG---------GGAAATA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40632199 160 +  42888418 GTG-----------------AGCAAACT--CAATGCAAACGACTTTC--------G--------CTACACCCACtat--gaaggcagtccagtttactggctagaagtttagatgggatttccaactttgctgccacttact--------------------------------agctgggtgc------------ccttg-------------------------g------------------------------------------------------------------------------------------------------ata----------GTA-AGAACT-------------------------------------ACTG---------------------AATGGTTTTTGA-CCAG---------GGAAATA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             625410 189 -  36342412 --C-----------------CACAAACT--CCATGCATGCAGCTTTCAATAACCAG--------CTATACCCATTTT--GAAAGCAGTGTAGTTTAGTGGTTACATATGCAGATAGGATTCCCAATC---CTGTTATTTATA--------------------------------AATTATGTAA------------CCTTGAAAGGGGTTAGTTACTATTATCGCAG------------------------------------------------------------------------------------------------------ATA----------ATAGAAAACT-------------------------------------ACTG----------------------ACGGTGCGTGACCCAA---------GGACATC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54401570 246 +  91889043 GCGGCATCTCTACCTTCCAcaaccaaccaaccaaccaaccaac--ca--------a--------ccaaccCCATTCT--GGAGGCAGTCT-GTCCAGTGGTTAGCAGTGTAGACGGAATTCCCACCC---CTGCCACCCACTCATCTTCCAGTTACCATTTCCTCGGGCAGCAAAGGTAGGTACTAGGGTGTGCCTCCTGG-------------------------G------------------------------------------------------------------------------------------------------GCACCACGAGGACAAA-GGACAT-------------------------------------GGTGGAACACCCCAGAGCGAGCTAGGATGGTCCCTGA-CCAG---------GGATG--
i canFam3.chr3              I 2 C 0
s dasNov3.JH570731            1791163 310 +   3943991 -----------------AAACACAATCT--CACTGCACACAACCTTC--------AGTAACTACCTACACCTATTTTGGGAAAAAACTATACTTTAGT---TAAAAATATATATGGAA-AActaatt---ctaccatttaca--------------------------------agctgtatta------------tcttg-------------------------gagtttgttttctcatttgtaaaaatgtaggtaacaggatgcactcatgggatactgtgaagatttaaaatatatgttaagtgctcagaagaatgcctggcacaca----------tta-aggactcagttagtgttagttattcttACTACAGCTAATAAACACTG----------------------ACAGTTCTTGA-CCAGTCCCACTTTTAAAGTC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113262968 221 + 116334831 I
e proCoq1.NW_012142813v1         7837 189 +     80520 I
e mm10.chr7                  81342884 826 + 145441459 I

a score=60987.000000
s hg38.chr15_KI270850v1_alt    327383 4 +    430880 CCAC
s panTro5.chr15              63480794 4 +  83230942 CCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438180 4 +  99763055 CCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38042 4 -   1709092 CCAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17190560 4 - 121039945 CCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60878756 4 + 169600520 CCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108405461 4 - 171882078 CCAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        15940 4 -   2311642 CCAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        14090 4 -   1987038 CCAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21094589 4 -  24206276 CCAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         9791 4 -   1397330 CCAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        33170 4 -   1784207 CCAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22229867 4 + 158406734 CCAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50466244 4 +  54856640 CCAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       609624 4 -   2910086 CCAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40632359 4 +  42888418 CCAT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113263189 4 + 116334831 CCAC
i micMur3.chr9              I 221 C 0
s proCoq1.NW_012142813v1         8026 4 +     80520 CCAC
i proCoq1.NW_012142813v1    I 189 C 0
s otoGar3.GL873530             625599 4 -  36342412 TTAC
i otoGar3.GL873530          C 0 I 8
s canFam3.chr3               54401816 4 +  91889043 CTGC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1791473 4 +   3943991 CTAC
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81342884 826 + 145441459 I

a score=796043.000000
s hg38.chr15_KI270850v1_alt    327387 43 +    430880 -TTTAGGAATCCAGCAA------ACACTTACCAAAAGCTTCAGCATTTCC
s panTro5.chr15              63480798 43 +  83230942 -TTTAGGAATCCAGCAA------ACACTTACCAAAAGCTTCAGCATTTCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438184 43 +  99763055 -TTTAGGAATCCAGCAA------ACACTTACCAAAAGCTTCAGCATTTCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38046 43 -   1709092 -TTTAGGAATCCAGCAA------ACACTTACCAAAAGCTTCAGCATTTCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17190564 43 - 121039945 -TTTAGGAATCCAGCAA------ACACTTACCAAAAGCTTCAGCATTTCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60878760 43 + 169600520 -TTTAGGAATCCACCAA------ACACTTACCAAAAGCTTCAGCATTTCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108405465 43 - 171882078 -TTTAGGAATCCACCAA------ACACTTACCAAAAGCTTCAGCATTTCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        15944 43 -   2311642 -TTTAGGAATCCACCAA------ACACTTACCAAAAGCTTCAGCATTTCC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        14094 43 -   1987038 -TTTAGGAATCCACCAA------ACACTTACCAAAAGCTTCAGCATTTCC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21094593 43 -  24206276 -TTTAGGAATCCACCAA------ACACTTACCAAAAGCTTCAGCATTTCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         9795 43 -   1397330 -TTTAGGAATCCACCAA------ACACTTACCAAAAGCTTCAGCATTTCC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        33174 43 -   1784207 -TTTAGGAATCCAGCAA------ACACTTACCAAAAGCTTCAGCATTTCC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22229871 43 + 158406734 -TTTATGAATCCAGCAA------ACACTTACCAAAAGCTTCAGCATTTCC
i calJac3.chr6              C 0 I 285
s saiBol1.JH378108           50466248 43 +  54856640 -TTTAGGAATCCAGCAA------ACACTTACCAAAAGCTTCAGCATTTCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       609628 43 -   2910086 -TTTAGGAACCCAGCAA------ACACTTACCAAAAGTTTCAGCATTTCC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40632363 43 +  42888418 -TTTAGGAATCCAGCAA------ACACTTACCAAAAGCTTCAGCATTTCC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113263193 43 + 116334831 -TTTAGGAATCCAGCAG------ACACTTACCAAAAGTTTCAGCATCTCC
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1         8030 43 +     80520 -TTTAGGAATCCAGCAG------ACACTTACCAAAAGTTTCAGCATCTCC
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             625611 49 -  36342412 -TTTAGAAATCCACCAATCCACCACACTTACCAAAAGCTTCAGCATTTCC
i otoGar3.GL873530          I 8 C 0
s mm10.chr7                  81343710 43 + 145441459 -TTCAAGGATTCAGGCA------ACACTCACCAGGAGCTTCAGCATCTCC
i mm10.chr7                 I 826 C 0
s canFam3.chr3               54401820 40 +  91889043 -TGGAGGAAC---ACCA------ACACTTACCAAGAGTTTCAACATCTCC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1791477 44 +   3943991 TTTAAGGAATCCAGCAA------ATACTTACCAAGAGCTTCAGCATTTCC
i dasNov3.JH570731          C 0 C 0

a score=1008146.000000
s hg38.chr15_KI270850v1_alt    327430 49 +    430880 TTAGTGTCAGGATCTACTTCAATAATCTCCTGATCCAAGGCTGAGACCT
s panTro5.chr15              63480841 49 +  83230942 TTAGTGTCAGGATCTACTTCAATTATCTCCTGATCCAAGGCTGAGACCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438227 49 +  99763055 TTAGTGTCAGGATCTACTTCAATTATCTCCTGATCCAAGGCTGAGACCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38089 49 -   1709092 TTAGTGTCAGGATCTACTTCAATTATCTCCTGATCCAAGGCTGAGACCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17190607 49 - 121039945 TTAGTGTCAGGATCTACTTCAATTATCTCCTGATCCAAGGCTGAGACCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60878803 49 + 169600520 TTAGTGTCAGGATCTACTTCAATTATCTCCTGATCCAGGGCTGAGACCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108405508 49 - 171882078 TTAGTGTCAGGATCTACTTCAATTATCTCCTGATCCAGGGCTGAGACCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        15987 49 -   2311642 TTAGTGTCAGGATCTACTTCAATTATCTCCTGATCCAGGGCTGAGACCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        14137 49 -   1987038 TTAGTGTCAGGATCTACTTCAATTATCTCCTGATCCAGGGCTGAGACCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21094636 49 -  24206276 TTAGTGTCAGGATCTACTTCAATTATCTCCTGATCCAGGGCTGAGACCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         9838 49 -   1397330 TTAGTGTCAGGATCTACTTCAATTATCTCCTGATCCAGGGCTGAGACCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        33217 49 -   1784207 TTAGTGTCAGGATCTACTTCAATTATCTCCTGATCCAGGGCTGAGACCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22230199 49 + 158406734 TTAGTGTCAGGATCTACTTCAATGATCTCCTGATCCAGGGCTGAGACCT
i calJac3.chr6              I 285 C 0
s saiBol1.JH378108           50466291 49 +  54856640 TTAGTGTCAGGATCTACTTCAATGATCTCCTGATCCAGGGCTGAGACCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       609671 49 -   2910086 TTAGTGTCAGGATCTACTTCAATGATCTCCTGATCCAGGGCTGAGACCT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40632406 49 +  42888418 TTAGTGTCAGGATCTACTTCAATGATCTCCTGATCCAGGGCTGAGACCT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113263236 49 + 116334831 TTAGTGTCAGGATCTACTTCAATGATCTCCTGATCCAGAGCTGAGACCT
i micMur3.chr9              C 0 I 427
s proCoq1.NW_012142813v1         8073 49 +     80520 TTAGTGTCAGGATCTACTTCGATGATCTCCTGATCCAGAGCTGAGACCT
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             625660 49 -  36342412 TTAGTGTCAGGATCTACTTCAATGATCTCCTGATCCAGGGCTGAGACCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81343753 49 + 145441459 TTGGTGTCGGGATCCACCTCAATGATCTCCTGATCTAGGGCTGAGACCT
i mm10.chr7                 C 0 I 1
s canFam3.chr3               54401860 49 +  91889043 TTAGTGTCAGGATCTACCTCGATGATCTCCTGATCCAGGGCTGAAACCT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1791521 49 +   3943991 TTAGTGTCAGGATCTACTTCAATGATCTCCTGATCCAGGGCTGAAACCT
i dasNov3.JH570731          C 0 C 0

a score=51797.000000
s hg38.chr15_KI270850v1_alt    327479 7 +    430880 A-CAAGGA
s panTro5.chr15              63480890 7 +  83230942 A-CAAGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438276 7 +  99763055 A-CAAGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38138 7 -   1709092 A-CAAGGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17190656 7 - 121039945 A-GAAGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60878852 7 + 169600520 A-GAAGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108405557 7 - 171882078 A-GAAGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        16036 7 -   2311642 A-GAAGCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        14186 7 -   1987038 A-GAAGCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21094685 7 -  24206276 A-GAAGCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         9887 7 -   1397330 A-GAAGCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        33266 7 -   1784207 A-GAAGTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22230248 8 + 158406734 ATTAAGGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50466340 7 +  54856640 A-GAAGCG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       609720 7 -   2910086 A-GAAGGG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40632455 7 +  42888418 A-GAAGGG
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1         8122 7 +     80520 A-AAAGGA
i proCoq1.NW_012142813v1    C 0 I 422
s otoGar3.GL873530             625709 7 -  36342412 A-AAAGGA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81343803 6 + 145441459 A-GAGGG-
i mm10.chr7                 I 1 C 0
s canFam3.chr3               54401909 5 +  91889043 A-CAAG--
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1791570 7 +   3943991 A-GAAGGA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113263285 427 + 116334831 I

a score=1833154.000000
s hg38.chr15_KI270850v1_alt    327486 207 +    430880 AACGAGGTAGGGTCAAAAT-ACCAATCAATGAGATTATCACTCACCTCTCCTCCTC----CTCTC----CCCAGGTTC-TTAAATATGGGGAAG--AGGAGC---TGCACAAGG--ATAGCATT---------------CCTCTCA-CAAGGTGAG---CAGTCT-CTTACAGTATTACAGACCCCGATGACCTGTTCTTCTGGCCTTACCTTCCC----ATGCCCTC------------ATTCAGTATTCAG-AACACTT
s panTro5.chr15              63480897 207 +  83230942 AACGAGGTAGGGTCAAAAT-ACCAATCAATGAGATTATCACTCACCTCTCCTCCTC----CTCTC----CCCAGGTTC-TTAAATATGGGGAAG--AGGAGC---TGCACAAGG--ATAGCATT---------------CCTCTCA-CAAGGTGAG---CAGTCT-CTTACAGTATTACAGACCCCGATGACCTGTTCTTCTGGTCTTACCTTCCC----ATGCCCTC------------ATTCAGTATTCAG-AACACTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438283 207 +  99763055 AACGAGGTAGGGTCAAAAT-ACCAATCAATGAGATTATCACTCACCTCTCCTCCTC----CTCTC----CCCAGGTTC-TTAAATATGGGGAAG--AGGAGC---TGCACAAGG--ATAGCATT---------------CCTCTCA-CAAGGTGAG---CAGTCT-CTTACAGTATTACAGACCCCGATGACCTGTTCTTCTGGTCTTACCTTCCC----ATGCCCTC------------ATTCAGTATTCAG-AACACTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38145 207 -   1709092 AACGAGGTAGGGTCAAAAT-ACCAATCAATGAGATTATCACTCACCTCTCCTCCTC----CTCTC----CCCAGGTTC-TTAAATATGGGGAAG--AGGAGC---TGCACAAGG--ATAGCATT---------------CCTCTCA-CAAGGCAAG---CAGTCT-CTTACAGTATTACAGACCCCGATGACCTGTTCTTCTGGTCTTACCTTCCC----ATGCCCTC------------ATTCAGTATTCAG-AACACTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17190663 209 - 121039945 AACGAGGTAGGGTCAAAAT-ACCAATCAATGAGATTATCACTCACCTCTCCTCCTG----CTCTC----CCCAGGTTCTTTAAATATGGGGAAG--AGGAGC---TGCACAAGG--ATAGCATT---------------TCTCTTA-AAAGGCGAG---CAGTCT-CTTACAGTATTACAGACCCCGATGACCTGTTCTTCTGGTCTTACCTTCCC----ATGCCCTTA-----------ATTCAGTATTCAG-AACACTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60878859 215 + 169600520 AACGAGATAGGCTCAACAT-ACCAATCAATGAGATTATCACTCACCTCTCCTCCTC----CTTTC----CCCAGGTTC-TTAAATATGGAGAAG--AGGAGT---TGCACAAGG--ATAGCATT---------------CCTCTCA-CAAGGCAAG---CAGTTT-C-TACAGTATTACAGACCCCGATGACCTGTTCTTCTGGTCTTACCTTCCC----ATGCCCTCAAT-ACTA--CTATTCAGTATTCAG-AACACTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108405564 215 - 171882078 AACGAGATAGGCTCAACAT-ACCAATCAATGAGATTATCACTCACCTCTCCTCCTC----CTTTC----CCCAGGTTC-TTAAATATGGAGAAG--AGGAGT---TGCACAAGG--ATAGCATT---------------CCTCTCA-CAAGGCAAG---CAGTCT-C-TACAGTATTACAGACCCCGATGACCTGTTCTTCTGGTCTTACCTTCCC----ATGCCCTCAAT-ACTA--CTATTCAGTATTCAG-AACACTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        16043 215 -   2311642 AACGAGATAGGCTCAACAT-ACCAATCAATGAGATTATCACTCACCTCTCCTCCTC----CTTTC----CCCAGGTTC-TTAAATATGGAGAAG--AGGAGT---TGCACAAGG--ATAGCATT---------------CCTCTCA-CAAGGCAAG---CAGTCT-C-TACAGTATTACAGACCCCGATGACCTGTTCTTCTGGTCTTACCTTCCC----ATGCCCTCAAT-ACTA--CTATTCAGTATTCAG-AACACTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        14193 212 -   1987038 AAGGAGATAGGCTCAACAT-ACCAATCAATGAGATTATCACTCACCT---CTCCTC----CTTTC----CCCAGGTTC-TTAAATATGGAGAAG--AGGAGT---TGCACAAGG--ATAGCATT---------------CCTCTCA-CAAGGCAAG---CAGTCT-C-TACAGTATTACAGTCCCCGATGACCTGTTCTTCTGGTCTTACCTTCCC----ATGCCCTCAAT-ACAT--CTATTCAGTATTCAG-AACACTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21094692 215 -  24206276 AACGAGATAGGCTCAACAT-ACCAATCAATGAGATTCTCACTCACCTCTCCTCCTC----CTTTC----CCCAGGTTC-TTAAATATGGAGAAG--AGGAGT---TGCACAAGG--ATAGCATT---------------CCTCTCA-CAAGGCAAG---CAGTCT-C-TACAGTATTACAGACCTCGATGACCTGTTCTTCTGGTCTTACCTTCCC----AAGCCCTCAAT-ACAT--CTATTCAGTATTTAG-AACACTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1         9894 212 -   1397330 AAGGAGATAGGCTCAACAT-ACCAATCAATGAGATTATCACTCACCT---CTCCTC----CTTTC----CCCAGGTTC-TTAAATATGGAGAAG--AGGAGT---TGCACAAGG--ATAGCATT---------------CCTCTCA-CAAGGCAAG---CAGTCT-C-TACAGTATTACAGACCCCGATGACCTGTTCTTCTGGTCTTACCTTCCC----ATGCCCTCAAT-ACGT--CTATTCAGTATTCAG-AACACTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        33273 212 -   1784207 AACGAGATAGGCTCAAAAT-ACCAATCAATGAGATTATCACTCACCTCTCCTCCTC----TTTTC----CCCAGGTTC-TTAAATAT---GAAG--AAGGGT---CGCACAAGG--ACAGCATT---------------CCTCTCA-CAAGGCAAG---CAGTCT-C-TACAGTATTACAGACCCCAATGACCTGTTCTTCTGGTCTTACCTTCCC----ATGCCCTCAAT-ACGT--CTATTCTGTATTCAG-AACACTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22230256 210 + 158406734 AACGAGGTAGGCTGAAAAT-ACCAATCTATGAGGTCATCACTCACCT------CTC----CTTTC----CCCAGGCTC-TTAAACATGGGGAAG--AGGGGC----AAACAAGGATATAGCATT---------------CATCTCA-CAAGGTGAG---CAGTCT-CTTAGAGTATTATAGACCCCAACCATCGGTTCTTCTGCTCTTACCTTCCT----ATTCCCACATT-ACAT--CTACTCAGTATTCAG-AACATT-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50466347 207 +  54856640 AACGAGGTAGGCTGAAAAT-ACCAATCTATGAGGTCATCGCTCACCT------CTC----CTTTC----CCCAGGCTC-TTAAACATGGGAGAG---GGGGC----AAACAAGGATATAGCATT---------------CCTCTCA-GGAGGTGAG---CAG--T-CTTACAGTATTATAGACCCCAACGACCGGTTCTTCTGCTCTTACCTTCCT----ATGCCCACATT-ACAT--CTACTCAGTATTCAG-AACATT-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       609727 210 -   2910086 AACGAGGTAGGCTGAAAAT-ACCAATCTATGAGGTCATCACTCACCT------CTC----CTTTC----CCCAGGCTC-TTAAACATGGGGGAG--GGGGGC----AAACAAGGATATAGCATT---------------CCTCTCA-CAGGGTGAG---CAGTCT-CTTACAGTATTATAGACCCCAACCACCGGTTCTTCTGCTCTTACCTTCCT----ATGCCCACATT-ACAT--CTACTCAGTATTCAG-AACATT-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40632462 209 +  42888418 AACGAGGTAGGCTGAAAAT-ACCAATCTATGAGGTCATCACTCACTT------CTC----CTTTC----CCCAGGCTC-TTAAACATGGGGGAG--GGGGGC----AAACAAGGATATAGCATT---------------CCTCTC--CAAGGTGAG---CAGTCT-CTTACAGTATTATAGACCCCAACGACCGGTTCTTCTGCTCTTACCTTCCT----AAGCCCACATT-ACAT--CTACTCAGTATTCAG-AACACC-
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             625716 207 -  36342412 AAAGAGATAGACCCAAGTT-ATCAATTAATTAGTT-----CTCACTTCTGC--TTC----TTTTT----TCCAGATTC-TTAAATAAGCAGAAAGAAAAAAT---TATATAGGG--GGTGGA-------------------TCTCA-CAAAGCAAA---GTGTCA-CCTACAGAA--AGAGGCTCCAAAGACTT-TTCCTCTGGTTTTACCTTCCC----ATACTCCCATT-ATTTACCTATTAAGTGTTCAGAAAAACCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81343809 209 + 145441459 AAAGAATCAAGTTCAAATT-ATGAATGCGTG-GGTTATCTTTCACCTCCTCTGCTC----CCAACGCAACACAtaacc-ttagctgtcctggaa--agcaccatgtggaccagg--ctggcttcgagctcagacatctgcctccca-aatgctgaaactaaagct-g-tgcaccaccacagcccAC-----TTTATTCTTGTGTCAGAACCAT-------------------------CTAGTGTGCATTCAG--------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54401914 203 +  91889043 AACAGGGCAGGCCCCAAAG-ACCAATCAG-GGGCTTCTCTCTCTCTCTCTCTCCCCACCGCTTCT----CCCAGATTC-TTCAATGGAAGAAAA--CGGGAG------GCAGGG--TCACCCCC---------------CCCCCCACCAAGGTGAG---CAGTCTGCCTACGGGATAA-----------------TTCTTCTACTTTCCCCTTTGT---AATTCCCTCCTTCCCAC--CCAGCCACTTTCCAG-AAAACCT
i canFam3.chr3              C 0 I 62
s dasNov3.JH570731            1791577 179 +   3943991 -ACAAGGTAGGCCCACAGTAATCAATCAGTGAGCT-----CTCACCT---CCCCTG----CTTCT----CCCA--TTC-TTAAAT------GAG--CAGACC---AAAAAAAAA--AAAAAAAG---------------C----CA-GGGGCAGGA---TAGGAT-CCCACAG----------------------GTATTTTGGTTTTATCTTTCTTTGTATGCCCTCGTTATTAC--CTAATCAGTAGTCAG-AAAAACT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113263285 427 + 116334831 I
e proCoq1.NW_012142813v1         8129 422 +     80520 I

a score=417364.000000
s hg38.chr15_KI270850v1_alt    327693 43 +    430880 GAAGTCTG-TG----TTTACACC-AAAGAATACTATATTAGGGGCAAAC
s panTro5.chr15              63481104 43 +  83230942 GAAGTCTG-TG----TTTACACC-AAAGAATACTATATTAGGGGCAAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438490 43 +  99763055 GAAGTCTG-TG----TTTACACC-AAAGAATACTATATTAGGGGCAAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38352 43 -   1709092 GAAGTCTG-TG----TTTACACC-AAAGAATACTATATTAGGGGCAAAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17190872 43 - 121039945 GAAGTCTG-TG----TTTACACC-AAAGAATACTATATTAGGTGCAAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879074 43 + 169600520 GAAGTCTT-TG----TTTACACC-AAGGAATACTATATTAGGGGCAAAT
i rheMac8.chr7              C 0 I 4
s macFas5.chr7              108405779 43 - 171882078 GAAGTCTT-TG----TTTACACC-AAGGAATACTATATTAGGGGCAAAT
i macFas5.chr7              C 0 I 4
s macNem1.NW_012011945v1        16258 43 -   2311642 GAAGTCTT-TG----TTTACACC-AAGGAATACTATATTAGGGGCAAAT
i macNem1.NW_012011945v1    C 0 I 4
s cerAty1.NW_012002657v1        14405 43 -   1987038 GAAGTCTT-TG----TTTACACC-AAGAAATACTATATTAGGGGCAAAT
i cerAty1.NW_012002657v1    C 0 I 4
s chlSab2.chr29              21094907 44 -  24206276 GAAGTCTTGTG----TTTACACC-AAGGAATACTATATTAGGGGCAAAT
i chlSab2.chr29             C 0 I 4
s manLeu1.NW_012106908v1        10106 43 -   1397330 GAAGTCTT-TG----TTTACACC-AAGAAATACTATATTAGGGGCAAAT
i manLeu1.NW_012106908v1    C 0 I 4
s colAng1.NW_012117110v1        33485 43 -   1784207 GAAGTCTG-TG----TTTACACC-AAGGAACACCATATTAGGGGCAAAT
i colAng1.NW_012117110v1    C 0 I 13
s calJac3.chr6               22230466 42 + 158406734 -AAGTCTG-TG----TTTACATC-AAATAATACTATATTAGGGGCAAAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50466554 42 +  54856640 -AAGTCTG-TG----TTTACATC-AAAGAATACTATACTAGGGGCAAAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       609937 42 -   2910086 -AAGTCTG-TG----TTTACATC-AAAGAATACTATATTAGGGGCAAAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40632671 46 +  42888418 -AAGTCTG-TGTTTATTTACATC-AAAGAATATTATATTAGGGGCAAAC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             625923 37 -  36342412 TAAAACTA-GG----TTT-CAC-----GAATACTATGTTAGG-GCAAAT
i otoGar3.GL873530          C 0 I 5
s mm10.chr7                  81344018 25 + 145441459 -AAAGCAG-GG----TTCACAC---------------TTGGATGTC---
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1791756 44 +   3943991 CAATACTA-GG----TTTATACCTCATGAATACTACGTCAGAGGCAGAT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113263285 427 + 116334831 I
e proCoq1.NW_012142813v1         8129 422 +     80520 I
e canFam3.chr3               54402117 62 +  91889043 I

a score=42034.000000
s hg38.chr15_KI270850v1_alt    327736 6 +    430880 -AATCga
s panTro5.chr15              63481147 6 +  83230942 -AATCAa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438533 6 +  99763055 -AATCAa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38395 6 -   1709092 -AATCAa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17190915 6 - 121039945 -AATCAa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879121 6 + 169600520 -AACCCA
i rheMac8.chr7              I 4 I 3
s macFas5.chr7              108405826 6 - 171882078 -AACCCA
i macFas5.chr7              I 4 I 3
s macNem1.NW_012011945v1        16305 6 -   2311642 -AACCCA
i macNem1.NW_012011945v1    I 4 I 3
s cerAty1.NW_012002657v1        14452 6 -   1987038 -AACCCA
i cerAty1.NW_012002657v1    I 4 I 3
s chlSab2.chr29              21094955 6 -  24206276 -AACCCA
i chlSab2.chr29             I 4 I 3
s manLeu1.NW_012106908v1        10153 6 -   1397330 -AACCCA
i manLeu1.NW_012106908v1    I 4 I 3
s calJac3.chr6               22230508 6 + 158406734 -AATCAA
i calJac3.chr6              C 0 I 7
s saiBol1.JH378108           50466596 6 +  54856640 -AATCAG
i saiBol1.JH378108          C 0 I 7
s cebCap1.NW_016107610v1       609979 6 -   2910086 -AATCAA
i cebCap1.NW_016107610v1    C 0 I 7
s aotNan1.NW_018505940v1     40632717 6 +  42888418 -AATCAA
i aotNan1.NW_018505940v1    C 0 I 7
s otoGar3.GL873530             625965 6 -  36342412 -AACCag
i otoGar3.GL873530          I 5 I 2
s mm10.chr7                  81344043 6 + 145441459 -AAGCTA
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1791800 6 +   3943991 AAACCA-
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113263285 427 + 116334831 I
e proCoq1.NW_012142813v1         8129 422 +     80520 I
e canFam3.chr3               54402117 62 +  91889043 I
e colAng1.NW_012117110v1        33528 13 -   1784207 I

a score=231338.000000
s hg38.chr15_KI270850v1_alt    327742 22 +    430880 ---gccacgacagcagtcatcaaat
s panTro5.chr15              63481153 22 +  83230942 ---gccacgacagcagtcatcaaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438539 22 +  99763055 ---gccacgacagcagtcatcaaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38401 22 -   1709092 ---gccacgacagcagtcatcaaat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17190921 22 - 121039945 ---gccacaacagcagtcatcaaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879130 22 + 169600520 ---GCcacgatagcagtcatcaaat
i rheMac8.chr7              I 3 C 0
s macFas5.chr7              108405835 22 - 171882078 ---GCcacgatagcagtcatcaaat
i macFas5.chr7              I 3 C 0
s macNem1.NW_012011945v1        16314 22 -   2311642 ---GCcacgatagcagtcatcaaat
i macNem1.NW_012011945v1    I 3 C 0
s cerAty1.NW_012002657v1        14461 22 -   1987038 ---ACcacgatagcagtcatcaaat
i cerAty1.NW_012002657v1    I 3 C 0
s chlSab2.chr29              21094964 22 -  24206276 ---GCCACGATAGCAGTCATCAAAT
i chlSab2.chr29             I 3 C 0
s manLeu1.NW_012106908v1        10162 22 -   1397330 ---GCcacgatagcagtcatcaaat
i manLeu1.NW_012106908v1    I 3 C 0
s colAng1.NW_012117110v1        33541 22 -   1784207 ---GCCACGATAGCAATCATCAAAT
i colAng1.NW_012117110v1    I 13 C 0
s calJac3.chr6               22230521 22 + 158406734 ---GAAACAGCAGCAGTCATCAAAT
i calJac3.chr6              I 7 C 0
s saiBol1.JH378108           50466609 22 +  54856640 ---GACACAACAGCAGTCATCAAAT
i saiBol1.JH378108          I 7 C 0
s cebCap1.NW_016107610v1       609992 22 -   2910086 ---GACACAACAGCAGTCATCAAAT
i cebCap1.NW_016107610v1    I 7 C 0
s aotNan1.NW_018505940v1     40632730 22 +  42888418 ---GACACAACAGCAGTCATCAAAT
i aotNan1.NW_018505940v1    I 7 C 0
s otoGar3.GL873530             625973 21 -  36342412 ---gacatgatgacagtcaccaaa-
i otoGar3.GL873530          I 2 C 0
s mm10.chr7                  81344049 20 + 145441459 ---ACCACGTCGGGAGGCACT--CT
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1791806 22 +   3943991 GAGGCCGGGACAGC---CATCGAGC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113263285 427 + 116334831 I
e proCoq1.NW_012142813v1         8129 422 +     80520 I
e canFam3.chr3               54402117 62 +  91889043 I

a score=1119481.000000
s hg38.chr15_KI270850v1_alt    327764 129 +    430880 caac----attaagggctc--tc--a--tg-aaata-tggaatag----acttaactggttccagaagagcagaatggaggcta--------aGAAACTGGTAGGGGGCCTATGGGCACCCACAGCTGGTTATGGAATGTATGGATTAAAGGT-----
s panTro5.chr15              63481175 129 +  83230942 caac----attaagggctc--cc--a--tg-aaata-tggaatag----acttaactggttccagaagagcagaatggaggcta--------aGAAACTGGTAGGGGGCCTATGGGCACCCACAGCTGGTTATGGAATGTATGGATAAAAGGT-----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438561 129 +  99763055 caac----attaagggctc--cc--a--tg-aaata-tggaatag----acttaactggttccagaagagcagaatggaggcta--------aGAAACTGGTAGGGGGCCTATGGGCACCCACAGCTGGTTATGGAATGTATGGATAAAAGGT-----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38423 129 -   1709092 caac----attaagggctc--tc--a--tg-aaata-tggaatag----acttaactggttccagaagagcagaatggaggcta--------aGAAACTGGTAGGGGGCCTATGGGCACCCACAGCTGGTTATGGAATGTATGGATAAAAGGT-----
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17190943 132 - 121039945 caaca-ttattaagggctc--tc--a--tg-aaata-tggaatag----acttaactggttccagaagagcagaatggaggcta--------agaaactcgtagggagCCTGTTGGCACCCACAGCTGGTTATGGAATGTATGGATAAAAGGT-----
i nomLeu3.chr6              C 0 I 3
s rheMac8.chr7               60879152 126 + 169600520 caaca-ttattaagggctc--tc--a--tg-aaata-tggacta---------aactagttccaaaagagcagaatggaggcta--------agaaactgataggggg-CTATGGGCACCTACAGCTGGTTAGGAAATGTATGGATAAAAGGT-----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108405857 126 - 171882078 caaca-ttattaagggctc--tc--a--tg-aaata-tggacta---------aactagttccaaaagagcagaatggaggcta--------agaaactgataggggg-ctagGGGCACCTACAGCTGGTTAGGAAATGTATGGATAAAAGGT-----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        16336 126 -   2311642 caaca-ttattaagggctc--tc--a--tg-aaata-tggacta---------aactagttccaaaagagcagaatggaggcta--------agaaactgataggggg-CTATGGGCACCTACAGCTGGTTAGGAAATGTATGGATAAAAGGT-----
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        14483 131 -   1987038 caaca-ttattaagggctc--tc--a--tg-aaata-tggactaa----acttaactagttccaaaagagcagaatggaggcta--------agaaactgataggggg-CTATGGGCACCTACAGCTGGTTAGGAAATGTATGGATAAAAGGT-----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21094986 126 -  24206276 CAACA-CTATTAAGGGCTC--TC--A--TG-AAATA-TGGACTA---------AACTAGTTCCAAAAGAGCAGAATGGAGGCTA--------AGAAACTGATAGGGAG-CTATGGGCACCTACAGCTGGTTAGGAAATGTATGGATAAAAGGT-----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        10184 131 -   1397330 caaca-ttattaagggctc--tc--a--tg-aaata-tggactaa----acttaactagttccaaaagagcagaatggaggcta--------agaaactgataggggg-CTATGGGCACCTACAGCTGGTTAGGAAATGTATGGATAAAAGGT-----
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        33563 126 -   1784207 CAACA-TTATTAAGGGCTC--CC--A--TG-AAATA-CGGACTA---------AACTAGTTCCAAAAGAGCAGAATGGAGGCTA--------ATAAACTGATAGGGGG-CTATGGGCACCTACAGCTGGTTAGGAAATGTATGGATAAAAGGT-----
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22230543 130 + 158406734 CAACA-TTATTAAGGGCTC--TC--A--TG-AACTA-CAGAACAG----ACTTAACTGGTTGGAAAAGAGTAGAATGGAGGATA--------AAAAACTAACAGG-GGCCTATGGGCACCTACAGCTGA-TATATAATGTATGGATAAAAGGT-----
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50466631 129 +  54856640 CAAC----ATTAAGGGCTC--TC-AA--TG-AACTA-CAGAATAG----ACTTAACTGGTTGG-AAAGAGTAGAATGGAGAATA--------AAAAACTGACAGGAGGCCTATGGGCACCTACAGCTGATTATAGAATGTATGGATAAAAGGT-----
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       610014 131 -   2910086 CAACA-TTATGAAGGGCTC--TC--A--TG-AACTA-TAGAGTAG----ACTTAACTGGTTGGAAAAGAGTAGAATGGAGGATA--------AAAAACTGACAGG-GGCCTATGGGCACCTACAGCTGACTATGGAATGTATAAATAAAAGGT-----
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40632752 132 +  42888418 CAACA-TTATTAAGGGCTC--TC--A--TG-AACTA-CAGAATAG----ACTTAACTGGTTGGAAAAGAGTAGAATGGAGGATA--------AAAAACTGACAGGGGACCTATGGGCACCTACAGCTGATTATGGAATGTATGGATAAAAGGT-----
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             625994 135 -  36342412 -aat--tcacaaaggtttc--tc--atgtg-aaaaa-tggaacagatttatttaaaaggtcccaggagagcagaattgaggtta--------atAAACACATAGGCAGGTTATGGGGACCTGCA-CTGGTGAAAGGGTGTGTGGATAAAAGAC-----
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81344069  96 + 145441459 CACT---------GGGCTC--CC--A--TGTGAAAA-TGAATTTA--------GACC--TCGCAGAGAAGCTCAAGGTCGGCTG--------A----------------TTACAGGCACCCTCGgctgg-------gtgtgttggcccacgcc-----
i mm10.chr7                 C 0 I 13
s canFam3.chr3               54402179 107 +  91889043 CAGC----ATCCAGGACTCGGCC--C--TG-TAAGACCAGAAGGG----ACTTCACG---TCCCGGAAAGGAGAAC-GAGGCCA--------TGGTACAGGCAGAGGA--------------CGGCGGGGTGC------TGTGGTTCAAGAC------
i canFam3.chr3              I 62 C 0
s dasNov3.JH570731            1791828 140 +   3943991 ----AGTCATTAAGGGCTT--TCTTA--TG-AAAAA-TGG--TGG----ACTGAAATGGTCCTTAGGGGGCAGAA--GAGGCTACTGTAGGGATATACAGGTAGACAGCTTACAGGCACCTACAGCTGGTTAGGGGGTGTTCAGGCAAAGGACCCCAT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113263285 427 + 116334831 I
e proCoq1.NW_012142813v1         8129 422 +     80520 I

a score=505509.000000
s hg38.chr15_KI270850v1_alt    327893 35 +    430880 CTCAGATTCAGCTGAGGT--------------CCCTTTGGAAGCC-------AAGA
s panTro5.chr15              63481304 35 +  83230942 CTCAGATTCAGCTGAGGT--------------CCCTTTGGAAGCC-------AAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438690 35 +  99763055 CTCAGATTCAGCTGAGGT--------------CCCTTTGGAAGCC-------AAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38552 35 -   1709092 CTCAGATTCAGCTGAGGT--------------CCCTTTGGAAGCC-------AAGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191078 35 - 121039945 CTCAGATTCAGCTGAGGT--------------CCCTTTGGAAGCC-------AGGA
i nomLeu3.chr6              I 3 C 0
s rheMac8.chr7               60879278 34 + 169600520 CTCAGATTCAGCTGAGGT--------------CCCTTTGGAAGCC--------GGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108405983 34 - 171882078 CTCAGATTCAGCTGAGGT--------------CCCTTTGGAAGCC--------TGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        16462 34 -   2311642 CTCAGATTCAGCTGAGGT--------------CCCTTTGGAAGCC--------GGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        14614 34 -   1987038 CTCAGATTCAGCTGAGGT--------------CCCTTTGGAAGCC--------GGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21095112 34 -  24206276 CTCAGATTCAGCTGAGGT--------------CCCTTTGGAAGCC--------AGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        10315 34 -   1397330 CTCAGATTCAGCTGAGGT--------------CCCTTTGGAAGCC--------GGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        33689 34 -   1784207 CTCAGATTCAGCTGAGGT--------------CCCTTTGGAAGCC--------GGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22230673 35 + 158406734 CTCAGATTCAGCTGAAGT--------------CCCTTTGGAAGCC-------AGGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50466760 35 +  54856640 CTCAGATTCAGCTGAAGT--------------CCCTTTGGAAGCC-------AGGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       610145 35 -   2910086 CTCAGATTCAGCTTAAGT--------------CCCTTTGGAAGCC-------AGGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40632884 35 +  42888418 CTCAGATTCAGCTGAAGT--------------ACCTTTGGAAGCC-------AGGA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113263712 35 + 116334831 CTCAGATTCAGCTGAGGT--------------CCCTCTGGAAGAC-------AAGA
i micMur3.chr9              I 427 I 66
s proCoq1.NW_012142813v1         8551 35 +     80520 CTCAGGTTCAGCTGAGGT--------------CCCTCTGGAAGAC-------AAGA
i proCoq1.NW_012142813v1    I 422 C 0
s otoGar3.GL873530             626129 35 -  36342412 CTCAGATTCAGTTGGGGT--------------TCCTTTGGAAGGC-------AAGA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81344178 54 + 145441459 ctcaga--aggccgaggtgggtggatctctcatcattttgaggAAATAGATTAAGA
i mm10.chr7                 I 13 I 11
s canFam3.chr3               54402286 33 +  91889043 -----CCTCGGCCGAGGG--------------CCCTTCCAGGGTT----CTCAGGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1791968 35 +   3943991 CTCAGGGTCAGCTGAGGT--------------CTCTCTGGAAGTG-------AAGG
i dasNov3.JH570731          C 0 C 0

a score=49534.000000
s hg38.chr15_KI270850v1_alt    327928 3 +    430880 ACC
s panTro5.chr15              63481339 3 +  83230942 ACC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438725 3 +  99763055 ACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38587 3 -   1709092 ACC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191113 3 - 121039945 ACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879312 3 + 169600520 ACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406017 3 - 171882078 ACC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        16496 3 -   2311642 ACC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        14648 3 -   1987038 ACC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21095146 3 -  24206276 ACC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        10349 3 -   1397330 ACC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        33723 3 -   1784207 ACC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22230708 3 + 158406734 ACC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50466795 3 +  54856640 ACC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       610180 3 -   2910086 ACC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40632919 3 +  42888418 ACC
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1         8586 3 +     80520 ACC
i proCoq1.NW_012142813v1    C 0 I 61
s otoGar3.GL873530             626164 3 -  36342412 ACT
i otoGar3.GL873530          C 0 I 3
s mm10.chr7                  81344243 3 + 145441459 TCC
i mm10.chr7                 I 11 C 0
s canFam3.chr3               54402319 3 +  91889043 GCC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1792003 3 +   3943991 ACT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113263747 66 + 116334831 I

a score=114736.000000
s hg38.chr15_KI270850v1_alt    327931 13 +    430880 CATAGCTTTATCA
s panTro5.chr15              63481342 13 +  83230942 CATAGCTTTATCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438728 13 +  99763055 CATAGCTTTATCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38590 13 -   1709092 CATAGCCTTATCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191116 13 - 121039945 CACAGGTTTATCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879315 13 + 169600520 CACAGCTTTATCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406020 13 - 171882078 CACAGCTTTATCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        16499 13 -   2311642 CACAGCTTTATCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        14651 13 -   1987038 CACAGCTTTATCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21095149 13 -  24206276 CACAGCTTTATCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        10352 13 -   1397330 CACAGCTTTATCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        33726 13 -   1784207 CACAGCTTTATCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22230711 13 + 158406734 CATAGCTTTATCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50466798 13 +  54856640 CACAGCTTTATCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       610183 13 -   2910086 CACAGCTTTATCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40632922 13 +  42888418 CACAGCTTTATCA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             626170 10 -  36342412 CGCGGCCTCA---
i otoGar3.GL873530          I 3 I 24
s mm10.chr7                  81344246 13 + 145441459 AGCTGCGTTCCCA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54402322  9 +  91889043 ---TGATCCATC-
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1792006  1 +   3943991 -------T-----
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113263747 66 + 116334831 I
e proCoq1.NW_012142813v1         8589 61 +     80520 I

a score=282246.000000
s hg38.chr15_KI270850v1_alt    327944 28 +    430880 TTTGAGGATTAGCC-------AGAAGCCCAAATAT
s panTro5.chr15              63481355 28 +  83230942 TTTGAGGATTAGCC-------AGAAGCCCAAATAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438741 28 +  99763055 TTTGAGGATTAGCC-------AGAAGCCCAAATAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38603 28 -   1709092 TTTGAGGATTAGCC-------AGAAGCCCAAATAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191129 28 - 121039945 TTTGAAGATTAGCC-------AGAAGCCCAAATAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879328 28 + 169600520 TTCGAGGATTAGCC-------AGAAGCCCAATTAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406033 28 - 171882078 TTCGAGGATTAGCC-------AGAAGCCCAATTAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        16512 28 -   2311642 TTCGAGGATTAGCC-------AGAAGCCCAATTAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        14664 28 -   1987038 TTCGAGGATTAGCC-------AGAAGCCCAATTAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21095162 28 -  24206276 TTCGAGGATTAGCC-------AGAAGCCCAATTAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        10365 28 -   1397330 TTCGAGGATTAGCC-------AGAAGCCCAATTAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        33739 28 -   1784207 TTCGAGGATTAGCC-------AGAAGCCCAAATAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22230724 28 + 158406734 TTTGAGGATTAGCC-------AGAAGCCCAAATAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50466811 28 +  54856640 TTTGAGGATTAGCC-------AGAGGCCCAAATAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       610196 28 -   2910086 TTTGAGGATTAGCC-------AGAGGCCCCAATAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40632935 28 +  42888418 TTTGAGGATTAGCC-------AGAAGCCCAAATAT
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81344259 34 + 145441459 -CCTCAGGTGAGCCCCCAGGAAGAGGTGCAGAGGA
i mm10.chr7                 C 0 I 4
s canFam3.chr3               54402331 17 +  91889043 CTCGAGGAGCAGCC-------GGC-----------
i canFam3.chr3              C 0 C 0
e micMur3.chr9              113263747 66 + 116334831 I
e proCoq1.NW_012142813v1         8589 61 +     80520 I
e dasNov3.JH570731            1792007  0 +   3943991 C
e otoGar3.GL873530             626180 24 -  36342412 I

a score=48735.000000
s hg38.chr15_KI270850v1_alt    327972 3 +    430880 CCA
s panTro5.chr15              63481383 3 +  83230942 CCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438769 3 +  99763055 CCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38631 3 -   1709092 CCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191157 3 - 121039945 CTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879356 3 + 169600520 CCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406061 3 - 171882078 CCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        16540 3 -   2311642 CCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        14692 3 -   1987038 CCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21095190 3 -  24206276 CCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        10393 3 -   1397330 CCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        33767 3 -   1784207 CCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22230752 3 + 158406734 CCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50466839 3 +  54856640 CCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       610224 3 -   2910086 CCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40632963 3 +  42888418 CCA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113263813 3 + 116334831 CCA
i micMur3.chr9              I 66 C 0
s proCoq1.NW_012142813v1         8650 3 +     80520 CCA
i proCoq1.NW_012142813v1    I 61 C 0
s mm10.chr7                  81344297 3 + 145441459 CCA
i mm10.chr7                 I 4 C 0
s canFam3.chr3               54402348 3 +  91889043 CCT
i canFam3.chr3              C 0 C 0
e dasNov3.JH570731            1792007 0 +   3943991 C
e otoGar3.GL873530             626180 24 -  36342412 I

a score=2584631.000000
s hg38.chr15_KI270850v1_alt    327975 141 +    430880 GAAAGTTTACCTCAGGAACATAATTGTCTCTCCTTTCTCTCTCCTCCTCCTGCAGCTTGATGGAGATACCTCTTACTGGGCCTCTCTGAATTCGCTTCATCAGATGCGTGACATAACTACAAAGCACACACAGCCAAAGAG-
s panTro5.chr15              63481386 141 +  83230942 GAAAGTTTACCTCAGGAACATAATTGTCTCTCCTTTCTCTCTCCTCCTCCTGCAGCTTGATGGAGATACCTCTTACTGGGCCTCTCTGAATTCGCTTCATCAGATGCGTGACATAGCTACAAAGCACACACAGCCAAAGAG-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438772 141 +  99763055 GAAAGTTTACCTCAGGAACATAATTGTCTCTCCTTTCTCTCTCCTCCTCCTGCAGCTTGATGGAGATACCTCTTACTGGGCCTCTCTGAATTCGCTTCATCAGATGCGTGACATAGCTACAAAGCACACACAGCCAAAGAG-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38634 141 -   1709092 GAAAGTTTACCTCAGGAACATAATTGTCTCTCCTTTCTCTCTCCTCCTCCTGCAGCTTGATGGAGATACCTCTTACTGGGCCTCTCTGAATTCGCTTCATCAGATGCGTGACATAGCTACAAAGCACACACAGCCAAAGAG-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191160 141 - 121039945 GGAAGTTTACCTCAGGAACATAATTGTCTCTCCTTTCTCTCTCCTCCTCCTGCAGCTTGATGGAGATACCTCTTACTGGGCCTCTCTGAATCCGCTTCATCAGATGCGTGACATAGCTACAAAGCACACATAGCCAAAGAG-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879359 141 + 169600520 GAAAGTTTACCTCGGGAACGTAATTGTCTCTCCTTTCTCTCTCCTCCTCCTGCAGCTTGATGGAGATACCTCTTACAGGGCCTCTCTGAATCCGCTTCATCAGATGGGTGACATAGCTACAAAGCACGCATAGCCAAAGAG-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406064 141 - 171882078 GAAAGTTTACCTCGGGAACGTAATTGTCTCTCCTTTCTCTCTCCTCCTCCTGCAGCTTGATGGAGATACCTCTTACAGGGCCTCTCTGAATCCGCTTCATCAGATGGGTGACATAGCTACAAAGCACGCATAGCCAAAGAG-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        16543 141 -   2311642 GAAAGTTTACCTCGGGAACGTAATTGTCTCTCCTTTCTCTCTCCTCCTCCTGCAGCTTGATGGAGATACCTCTTACAGGGCCTCTCTGAATCCGCTTCATCAGATGGGTGACATAGCTACAAAGCACGCATAGCCAAAGAG-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        14695 141 -   1987038 GAAAGTTTACCTCGGGAACATAATTGTCTCTCCTTTCTCTCTCCTCCTCCTGCAGCTTGATGGAGATACCTCTTACAGGGCCTCTCTGAATTCGCTTCATCAGATGAGTGACATAGCTACAAAGCACGCATAGCCAAAGAG-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21095193 141 -  24206276 GAAAGTTTACCTCAGGAACGTAATTGTCTCTCCTTTCTCTCTCCTCCTCCTGCAGCTTGATGGAGATACCTCTTACAGGGCCTCTCTGAATCCGCTTCATCAGATGGGTGACATAGCTATAAAGCACGCATAGCCAAAGAG-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        10396 141 -   1397330 GAAAGTTTACCTCGGGAACATAATTGTCTCTCCTTTCTCTCTCCTCCTCCTGCAGCTTGATGGAGATACCTCTTACAGGGCCTCTCTGAATTCGCTTCATCAGATGAGTGACATAGCTACAAAGCACGCATAGCCAAAGAG-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        33770 141 -   1784207 GAAAGTTTACCTCAGGAACGTAATTGTCTCTCCTTTCTCTCTCCTCCTCCTGCAGCTTGATGGAGATACCTCTTACAGGGCCTCTCTGAATCCGCTTCATCAGATGGGTGACATAGCTACAAAGCACGCATAGCCAAAGAG-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22230755 141 + 158406734 GAAAGTTTACCTCAGGAACATAATTGTCTCTCCTTTCTCTCTCCTCCTCCTGCAGCTTGATGGAGATACCTCTTACTGGGCCTCTCTGAATCCGCTTCATCAGATGTGTGACATAGCTACAAAGCATACATGGCCAAAGAG-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50466842 141 +  54856640 CAAAGTTTACCTCAGGAACATAATTGTCTCTCCTTTCTCTCTCCTCCTCCTGCAGTTTGATGGAGATACCTCTTACTGGGCCTCTCTGAATCCGCTTCATCAGATGCGTGACATAGCTACAAAGCACACATGGCCAAAGAG-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       610227 141 -   2910086 GAAAGTTTACCTCAGGTACATAATTGTCTCGCCTTTCTCTCTCCTCCTCCTGCAGCTTGATAGAGATACCTCTTACTGGGCCTCTCTGAATCCGCTTCATTAGATGCGTGACATAACTATAAAGCACACATGGCCAAAGAG-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40632966 141 +  42888418 GAAAGTTTACCTCAGGAACATAATTGTCTCTCCTTTCTCTCTCTTCCTCCTGCAGCTTGATGGAGATACCTCTTACTGGGCCTCTCTGAATCCGCTTCATCAGATGCGTGACATAGCTACAAAGCACACACGGCCAAAGAG-
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113263816 141 + 116334831 GAAAGTTTACCTCTGGAACATAGTTATCTCTCCTCTCTCTCTCCTCCTCCTGCAGCTTGATGGAGATACCTCTCACCGGGCCTCTCTGAATCCGCTTCATCAGATGTGTGACGTAGCTACAAAGTACACAGGCCCAAGGAG-
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1         8653 141 +     80520 GAAAGTTTACCTCTGGGACATAGTTATCTCTCCTCTCTCTCTCCTCCTCCTGCAGCTTGATGGAGATACCTCTCACTGGGCCTCTCTGGATCCGCTTCATCAGATGTGTGACGTAGCTACAAAGCACACAGGCCCAAGGAG-
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             626204 140 -  36342412 GAAAGTTTACCTCAGGGACATAGTTGTCTCTCCTCTCTCTTTCTTCTTCCTGCAGCTTGATGGAGATGCCTCTCACTGGGCCCCTCTGGATCCTTTTCATCAGGTGTGTGACATAGCTACACAATG-ACACACCCAAAGAC-
i otoGar3.GL873530          I 24 C 0
s mm10.chr7                  81344300 131 + 145441459 CAAATCTTACCTCAGGAACGTAGTTATCTCTCCTCTCTCTCTCTTCTTCCTGCAACTTGATAGAGATGCCTCTCACAGGCCCTCTCTGAATCCGCTTCATCAGATGCGTGACATAGCTACAAGCAATGC----------GA-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54402351 140 +  91889043 GAAAGTTTACCTCGGGCACGTAATTATCCCTCCTTTCTCTCTCCTCCTCTTGCAACTTGATGGAGATGCCTCTCACCGGGCCCCGCTGAATCCGCTTCATCAGATGTGTCACATAGCTGCCAAGGAAACGCGCCCAAGAG--
i canFam3.chr3              C 0 I 305
s dasNov3.JH570731            1792007 134 +   3943991 GAAAGCTTACCTCAGGAACATAATTATCTCTCCTTTCTCTCTCCTCCTCCTGCAGCTTGATGGAGATACCCCGCACGGGACCTCTCTGGATCCGCTTCATCAGATGCGTGACATAGCTAC--------CAAAGCCCAAGGAC
i dasNov3.JH570731          C 0 C 0

a score=182097.000000
s hg38.chr15_KI270850v1_alt    328116 11 +    430880 AACAGTGAGAA
s panTro5.chr15              63481527 11 +  83230942 AACAGTGAGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438913 11 +  99763055 AACAGTGAGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38775 11 -   1709092 AACAGTGAGAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191301 11 - 121039945 AACAGTAGGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879500 11 + 169600520 AACAGTGAGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406205 11 - 171882078 AACAGTGAGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        16684 11 -   2311642 AACAGTGAGAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        14836 11 -   1987038 AACAGTGAGAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21095334 11 -  24206276 AACAGTGAGAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        10537 11 -   1397330 AACAGTGAGAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        33911 11 -   1784207 AACCGTGAGAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22230896 11 + 158406734 AACAGTGAGAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50466983 11 +  54856640 AACAGTGAGAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       610368 11 -   2910086 AACAGTGAGAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40633107 11 +  42888418 AACAGTGAGAA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113263957 11 + 116334831 AACAGCGAGAA
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1         8794 11 +     80520 AACAGTGAGAA
i proCoq1.NW_012142813v1    C 0 I 566
s otoGar3.GL873530             626344 11 -  36342412 AACAGTGAGAC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81344431  7 + 145441459 AACAGTG----
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1792141 11 +   3943991 AGCAGTGAGAA
i dasNov3.JH570731          C 0 C 0
e canFam3.chr3               54402491 305 +  91889043 I

a score=194029.000000
s hg38.chr15_KI270850v1_alt    328127 18 +    430880 GACAAATCAACTCCCACC
s panTro5.chr15              63481538 18 +  83230942 GACAAATCAACTCCCACC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438924 18 +  99763055 GACAAATCAACTCCCACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38786 18 -   1709092 GACGAATCAACTCCCATC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191312 18 - 121039945 GACAAATCAACTCCCACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879511 18 + 169600520 AACAAATCAACTCCCACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406216 18 - 171882078 AACAAATCAACTCCCACC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        16695 18 -   2311642 AACAAATCAACTCCCACC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        14847 18 -   1987038 AACAAATCAACTCCCACC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21095345 18 -  24206276 AACAAATCAACTCCCACC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        10548 18 -   1397330 AACAAATCAACTCCCACC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        33922 18 -   1784207 AACAAATCAACTCCCACC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22230907 18 + 158406734 GATGAATCAGTTCCCAGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50466994 18 +  54856640 GATGAATCAGTTCCCAGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       610379 18 -   2910086 GATAGATCAGTTCCCAGC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40633118 18 +  42888418 GATGAATCAATTCCCAGC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113263968 17 + 116334831 CACACATCAACTCCCA-C
i micMur3.chr9              C 0 C 0
s otoGar3.GL873530             626355 17 -  36342412 CACACATCCACTCCTA-T
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81344438 13 + 145441459 -----ACCACCTCCCACC
i mm10.chr7                 C 0 I 226
s dasNov3.JH570731            1792152 18 +   3943991 CACCTGTCGACGCCCACC
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1         8805 566 +     80520 I
e canFam3.chr3               54402491 305 +  91889043 I

a score=236127.000000
s hg38.chr15_KI270850v1_alt    328145 23 +    430880 -TGGTACTGAGCACATGTGCATAT
s panTro5.chr15              63481556 23 +  83230942 -TGGTACTGAGCACATGTGGATAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438942 23 +  99763055 -TGGTACTGAGCACATGTGGATAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38804 23 -   1709092 -TGGTACTGAGCACATGTGGATAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191330 23 - 121039945 -TGGTACTCAGCACAGGTGGATAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879529 23 + 169600520 -TGGTACTCAGCACATGTGGATAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406234 23 - 171882078 -TGGTACTCAGCACATGTGGATAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        16713 23 -   2311642 -TGGTATTCAGCACATGTGGATAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        14865 23 -   1987038 -TGGTACTCAGCACATGTGGATAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21095363 23 -  24206276 -TGGTACTCAGCACATGTGGATAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        10566 23 -   1397330 -TGGCACTCAGCACATGTGGATAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        33940 23 -   1784207 -TGGTACTCAGCACATGTAGATAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22230925 23 + 158406734 -TGGTACCCAGCACGTGTGGATGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50467012 22 +  54856640 -TAGTACCCAGCATGTGTGGAT-T
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       610397 23 -   2910086 -TGGTACCCAGCACGTGTGGATAT
i cebCap1.NW_016107610v1    C 0 I 320
s aotNan1.NW_018505940v1     40633136 23 +  42888418 -TGGGACCCAGCACGTGTGGATAT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113263985 23 + 116334831 -TGGTACCCAGAACATGTGGATGC
i micMur3.chr9              C 0 C 0
s otoGar3.GL873530             626372 22 -  36342412 -GGGT-CCCAGAACACTAGGTTAC
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH570731            1792170 22 +   3943991 TTAACACCCTGAGCACCTGGAT--
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1         8805 566 +     80520 I
e mm10.chr7                  81344451 226 + 145441459 I
e canFam3.chr3               54402491 305 +  91889043 I

a score=36164.000000
s hg38.chr15_KI270850v1_alt    328168 5 +    430880 ATAAA
s panTro5.chr15              63481579 5 +  83230942 ATAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438965 5 +  99763055 ATAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38827 5 -   1709092 ATAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191353 5 - 121039945 GTAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879552 5 + 169600520 GTAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406257 5 - 171882078 ATAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        16736 5 -   2311642 ATAAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        14888 5 -   1987038 ATAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21095386 5 -  24206276 ATAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        10589 5 -   1397330 ATAAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        33963 5 -   1784207 ATAAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22230948 4 + 158406734 -TAAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50467034 4 +  54856640 -TAAG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40633159 3 +  42888418 --AAG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113264008 5 + 116334831 ATAAA
i micMur3.chr9              C 0 C 0
s otoGar3.GL873530             626394 3 -  36342412 -TAA-
i otoGar3.GL873530          C 0 C 0
e proCoq1.NW_012142813v1         8805 566 +     80520 I
e mm10.chr7                  81344451 226 + 145441459 I
e dasNov3.JH570731            1792192 0 +   3943991 C
e canFam3.chr3               54402491 305 +  91889043 I
e cebCap1.NW_016107610v1       610420 320 -   2910086 I

a score=661021.000000
s hg38.chr15_KI270850v1_alt    328173 66 +    430880 TACCCGCTTTAGTTCTTTTCCACAGTGAGAAGGAAGAGGACTCACTATCCTGGGACCT-------------CCTACACA
s panTro5.chr15              63481584 66 +  83230942 TACCCGCTTTAGTTCTTTTCCACAGTGAGAAGGAAGAGCACTCACTATCCTGGGACCT-------------CCTACACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80438970 66 +  99763055 TACCCGCTTTAGTTCTTTTCCACAGTGAGAAGGAAGAGCACTCACTATCCTGGGACCT-------------CCTACACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38832 66 -   1709092 TACCCGCTTTAGTTCTTTTCCACAGTGAGAAGGAAGAGGACTCACTATCCTGGGACCT-------------CCTACACA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191358 66 - 121039945 TACCCGCTTTAGTTCTTTTCCACAGTGAGAAGGGAGACGACTCACTATCCTGGGACCT-------------CCTACACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879557 62 + 169600520 TACCCGCTTTAGTTCTTTTCCACAGTGAGAAGGGAGAGG----ACTATACTGGGACCT-------------CCTACACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406262 62 - 171882078 TACCCGCTTTAGTTCTTTTCCACAGTGAGAAGGGAGAGG----ACTATACTGGGACCT-------------CCTACACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        16741 60 -   2311642 TACCCGCTTTAGTTCTTTTC--CAGTGAGAAGGGAGAGG----ACTATACTGGGACCT-------------CCTACACA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        14893 62 -   1987038 TACCCGCTTTAGTTCTTTTCCATAGTGAGAAGGGAGAGG----ACTATACTGGGACCT-------------CCTACACA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21095391 62 -  24206276 TACCCGCTTTAGTTCTTTTCCACAGTGAGAAGAGAGAGG----ACTATCCTGGGACCT-------------CCTACACA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        10594 62 -   1397330 TACCCGCTTTAGTTCTTTTCCACAGTGAGAAGGGAGAGG----ACTATACTGGGACCT-------------CCTACACA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        33968 62 -   1784207 TACCCGCTTTAGTTCTTTTCCACAGTGAGAAGGGAGAGG----ACTATCGTGGGACCT-------------CCCACACA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22230952 64 + 158406734 TACCCACTTTAATTCTTTTC--CAGTGAGAAGGGAGAGAACTCACTAACCTGGGACCT-------------CCTACACA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50467038 64 +  54856640 TACCCACTTTAATTCTTTTC--CAGTGAGAAGGGAGAGGACTCACTATCCTGGGACCT-------------CCTACACA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       610740 64 -   2910086 TACCCACTTTAATTCTTTTC--CAGTGAGAAGGGAGAGGACTCACTATCCTGGGACCT-------------CCTAAACA
i cebCap1.NW_016107610v1    I 320 C 0
s aotNan1.NW_018505940v1     40633162 64 +  42888418 TACCCACTTTAATTCTTTTC--CAGTGAGAAGGGAGAGGACTCACTATCCTGGGACCA-------------CCTACACA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113264013 64 + 116334831 TATCAGTTTCGGCTCTTTTCCACAGTGAGA--AGAGAGGACTCACCATCCTAGGCCCT-------------CCTGCACA
i micMur3.chr9              C 0 I 465
s otoGar3.GL873530             626397 42 -  36342412 --------------CCCCACGTCAGTGGGAC-GGAGAGGACC--CCAGTCCAGA--------------------ACACA
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH570731            1792192 71 +   3943991 ------CTCCAATTCTTTTT--CAGTGAGAAGGGAGGGGGCTCATCATCCTAGGAACGTCTCAACTCTGAACCTACACA
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1         8805 566 +     80520 I
e mm10.chr7                  81344451 226 + 145441459 I
e canFam3.chr3               54402491 305 +  91889043 I

a score=1268823.000000
s hg38.chr15_KI270850v1_alt    328239 156 +    430880 ----TAGAACCTCCACTGGCCTGAGCATTCCTT---------CCCC-TTGGTTTCTCA--CTCTCTATTCAAACTCTCCTTCATGATGATCAAGcgccccacccccaactcgccccgccccgccccgcAGTTTCACGACCCTTCACAGCCTTCAT----TTTCTTCCAATTTCAAA
s panTro5.chr15              63481650 156 +  83230942 ----TAGAACCTCCACTGGCCTGAGCATTCCTT---------CCCT-TTGGTTTCTCA--CTCTCTATTCAAACTCTCCTTCATGATGATCAAGcgccccaccccccactcgccccgccccgccccgcAGTTTCACGACCCTTCACAGCCTTCAT----TTTCTTCCAATTTCAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80439036 156 +  99763055 ----TAGAACCTCCACTGGCCTGAGCATTCCTT---------CCCT-TTGGTTTCTCA--CTCTCTATTCAAACTCTCCTTCGTGATGATCAAGcgccccaccccccactcgccccgccccgccccgcAGTTTCACGACCCTTCACAGCCTTCAT----TTTCTTCCAATTTCAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        38898 156 -   1709092 ----TAGAACCTCCACTGGCCTGAGCATTCCTT---------CCCT-TTGGTTTCTCA--CTCTCTATTCAAACTCTCCTTCATGATGATCAAGcgccccaccccccactcgccccgccccgccccgcAGTTTCACGACCCTTCACAGCCTTCAT----TTTCTTCCAATTTCAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191424 130 - 121039945 ----TAGAACCTCCACTGGCCTGAGCATTCCTT---------CCCT-TTGGTTTCTCA----CTCTATTCAAACTCTCCCTCG---TGATCAA---------------------CTGCCCCGCCCCGCAGTTTCACGACCCTTCACAGCCTTCAT----TTTCTTCCAATTTCAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879619 155 + 169600520 ----TAGAACCTCCACTGGTCTGAGCATTCCTT---------CCCT-TTGGTTTCTCA--CTCACTATTCAAACTCTCCTTCATAGTGATCAACTCCCCCTCCCC-----CGCCCCGCCCCGCCCCGCAGTTTCACGACCCTTCACAGCCTTCATTTTCTTTCTTCCAATTTCAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406324 155 - 171882078 ----TAGAACCTCCACTGGTCTGAGCATTCCTT---------CCCT-TTGGTTTCTCA--CTCACTATTCAAACTCTCCTTCATAGTGATCAACTCCCCCTCCCC-----CGCCCCGCCCCGCCCCGCAGTTTCACGACCCTTCACAGCCTTCATTTTCTTTCTTCCAATTTCAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        16801 155 -   2311642 ----TAGAACCTCCACTGGTCTGAGCATTCCTT---------CCCT-TTGGTTTCTCA--CTCACTATTCAAACTCTCCTTCATAGTGATCAACTCCCCCTCCCC-----CGCCCCGCCCCGCCCCGCAGTTTCACGACCCTTCACAGCCTTCATTTTCTTTCTTCCAATTTCAAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        14955 150 -   1987038 ----TAGAACCTCCACTGGTCTGAGCATTCCTT---------CCCT-TTGGTTTCTCA--CTCACTATTCAAACTCTCCTTCATAGTGATCAACTCCCCCTC----------CCCCGCCCCGCCCCGCAGTTTCACGACCCTTCACAGCCTTCATTTTCTTTCTTCCAATTTCAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21095453 148 -  24206276 ----TAGAACCTCCACTGGTCTGAGCATTCCTT---------CCCT-TTGGTTTCTCA--CTCACTATTCAAACTCTCCTTCATAGTGATCAACTCCCCCCC----------CTC--CCCCGCCCCGCCGTTTCACGACCCTTCACAGCCTTCATTTTCTTTCTTCCAATTTCAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        10656 150 -   1397330 ----TAGAACCTCCACTGATCTGAGCATTCCTT---------CCCT-TTGGTTTCTCA--CTCACTATTCAAACTCTCCTTCATAGTGATCAACTCCCCCTC----------CCCCGCCCCGCCCCGCAGTTTCACGACCCTTCACAGCCTTCATTTTCTTTCTTCCAATTTCAAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        34030 143 -   1784207 ----TAGAACCTCCACAGGCCTGCGCATTCCTT---------CCCT-TTGGTTTCTCA--CACTCTATTCAAACTCTCCTTCATAGTGATCAACTGCCCCCC----------CCC-------CCCCGCAATTTCACGACCCTTCACAGCCTTCATTTTCTTTCTTCCAATTTCAAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22231016 138 + 158406734 ----TAGAAGCCCCAATGGCCTGAGCATTCCTT---------CCCT-TTGGTTTCTCA----CTCTATTCAAACTCTCCTTCACTGTGATCAA-------------------GACCACCCTCCACCATAGCTTCACTACTCTTCAC-ACATTCATTTTTTTCCTTACAATTTCAAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50467102 138 +  54856640 ----TAGAACCCCCAATGGCCTGAGCATTCCTT---------CCCT-TTGGTTTCTCA----CTCTATTCAAACTCTCCTTCATCGTGATCAA-------------------GACCGCCCTCCACCATAGTTTCACTACCCTTCAC-GACTTCATTTTTTTTCTTACAATTTCAAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       610804 138 -   2910086 ----CAGAACCCCCAATGGCCTGAGCATTCCTT---------CCCT-TTGGTTTCTCA----TTCTATTCAAACTCTCCTTCATCGTGATCAA-------------------GACCGCCCTCCGCCATAGTTTCACTACCCTTCAC-GCCTTCATTTTTTTTCTTACACTTTCAAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40633226 138 +  42888418 ----TAGAACGCCCAATGGCCTGAGCTTTCCTT---------CCCT-TTGATTTCTCA----CTCTATTCAAACTCTCCTTCATCGTGATCGA-------------------GACCGCCCTCCACCATAGTTTCACTACCCTTCAT-GCCTTCATTTTTTTTCTTACAATTTCAAA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             626439 115 -  36342412 -------AAGCTCCACTGACCTGGGCCTTCCTG---------CCCTCCTGGCCTCTCA--CT-----GTCAAACTCCCATTCGAGGTCACCAAAC-----------------CCCAGACCC----------------ACCCTTCTTAGCTTTCTTTTTTTCttt-----tttgaga
i otoGar3.GL873530          C 0 I 338
s dasNov3.JH570731            1792263 149 +   3943991 CACCTAGGATCCTCTCCAAGCCTAGCTCAGCTTACCTAAGTACCCT-TTGGTTTCTCACACCCTCTACTCAAACTCTCCTTCAAAATCACCAA-------------------ACCCAACC--CTTTAAAATTTCATGACCCCTCTCAGCCTTCACGGTCTT-----CGAGTTCAAG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113264077 465 + 116334831 I
e proCoq1.NW_012142813v1         8805 566 +     80520 I
e mm10.chr7                  81344451 226 + 145441459 I
e canFam3.chr3               54402491 305 +  91889043 I

a score=879073.000000
s hg38.chr15_KI270850v1_alt    328395 88 +    430880 TTCACATAACTTGGCAATTAATACGTTGACTTTGGCACTATTCTTCCAGGCCATATGCCTATAAATCTCTC-GAACAGTAACTGCAACT
s panTro5.chr15              63481806 88 +  83230942 TTCACATAACTTGGCAATTAATACGTTGACTTTGGCACTATTCTTCCAGGCCATATGCCTATAAATCTCTC-GAACAGTAACTGCAACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80439192 88 +  99763055 TTCACATAACTTGGCAATTAATACGTTGACTTTGGCACTATTCTTCCAGGCCATATGCCTATAAATCTCTC-GAACAGTAACTGCAACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        39054 88 -   1709092 TTCACATAATTTGGCAATTAATACGTTGACTTTGGCACTATTCTTCCAGGCCATACGCCTATAAATCTCTC-GAACAGTAACTGCAACT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191554 84 - 121039945 TTCACATAATTTGGC----AATACGTTGACTTTGGCACTATTCTTCCAGGCCATATTCCTATAAATCTCTC-GAACAGTAACTGCAACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879774 88 + 169600520 TTCACATAATTTGGCAATTAATACGTTGACTTTGGCACTATTCTTCCAGACCATATTCCTATAAATCTCTC-GAACAGTAACTGCAACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406479 88 - 171882078 TTCACATAATTTGGCAATTAATACGTTGACTTTGGCACTATTCTTCCAGACCATATTCCTATAAATCTCTC-GAACAGTAACTGCAACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        16956 88 -   2311642 TTCACATAATTTGGCAATTAATACGTTGACTTTGGCACTATTCTTCCAGACCATATTCCTATAAATCTCTC-GAACAGTAACTGCAACT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        15105 88 -   1987038 TTCACATAATTTGGCAATTAATACGTTGACTTTGGCACTATTCTTCCAGACCATATTCCTATAAATCTCTC-GAACAGTAACTGCAACT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21095601 88 -  24206276 TTCACATAATTTGGCAATTAATACGTTGACTTTGGCACTATTCTTCCAGACCATATTCCTATAAATCTCTC-GAACAGTAACTGCAACT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        10806 88 -   1397330 TTCACATAATTTGGCAATTAATACGTTGACTTTGGCACTATTCTTCCAGACCATATTCCTATAAATCTCTC-GAACAGTAACTGCAACT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        34173 88 -   1784207 TTCACATAATTTGGCAATTAATACGTTGACTTTGGCACTATTCTTCCAGGCCATATTCCTATAAATCTCTC-GAACAGTAACTGCAACT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22231154 88 + 158406734 TTCACATAACTAAGCAATTAATACATTGACTTTGGCACTACTCTTCGGGGCCATATTCGTATAAATCTCTG-GAACAGTAATTGCAACT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50467240 88 +  54856640 TTCACATAACTAAGCAATTAATACATTGACTTTGGCACTATTCTTCGGATCCATATTCCTATAAATCTCTG-GAACAGTAAGTGCAACT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       610942 88 -   2910086 TTCACATAACTAAGCAATTATTACATTGACTTTGGCACTATTCCTCGGAGCCATCTTCCTATAAATCTCTG-GAACAGTAACTGCAACT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40633364 88 +  42888418 TTCACATAACTAAGCAATTAATACATTGACTTTGGCACTATTCTTCGGGGCCATATTCCTATAAATCCCTG-GAAGAGTAACTGCAACT
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1792412 57 +   3943991 TCTACATAAT----------ACATATTG----------------------CTACAGTCTTACAAAATTTTCTGAGCAGCAATGGCATCT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113264077 465 + 116334831 I
e proCoq1.NW_012142813v1         8805 566 +     80520 I
e mm10.chr7                  81344451 226 + 145441459 I
e canFam3.chr3               54402491 305 +  91889043 I
e otoGar3.GL873530             626554 338 -  36342412 I

a score=500256.000000
s hg38.chr15_KI270850v1_alt    328483 53 +    430880 GTGAAGTAAGCATTAGAAGTTGACATCCAgccgggcgaggtggctcacgcctg
s panTro5.chr15              63481894 53 +  83230942 GTGAAGTAAGCATTAGAAGTTGACATCCAgctgggcgaggtggctcacgcctg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80439280 53 +  99763055 GTGAAGTAAGCATTAGAAGTTGACATCCAgccgggcgaggtggctcacgcctg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        39142 53 -   1709092 GTGAAGTAAGCATTAGAAGTTGACATCCAgccgggcgaggtggctcacgcctg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191638 53 - 121039945 GTGAAGAACGCATTATAAGTTGACACGCAgccgggcgcggtggctcacgtcta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879862 53 + 169600520 GTGAAGAACGCATTAGAAGTTGACACCTAgccgggcacggtggctcacgcctg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406567 53 - 171882078 GTGAAGAACGCATTAGAAGTTGACACCTAgccgggcacggtggctcacgcctg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        17044 53 -   2311642 GTGAAGAACGCATTAGAAGTTGACACCTAgccgggcacggtggctcacgcctg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        15193 53 -   1987038 GTGAAGAACGCATTAGAAGTTGACTCCTAgccgggcacggtggctcacgcctg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21095689 53 -  24206276 GTGAAGAACGCATTAGAAGTTGACACCTAgccgggcacggtggctcaggcctg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        10894 53 -   1397330 GTGAAGAACGCATTAGAAGTTGACACCTAgccgggcacggtggctcacgcctg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        34261 52 -   1784207 GTGAAGAACGCATTAGAAGTTGACACCTAgccgggcac-gtggctcacgcctg
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22231242 53 + 158406734 GTTAAGAACGCATTAAAAGTTGACACCTAAccgggcgcggtggcccacttctg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50467328 53 +  54856640 GTAAAGAACGCATTAAAAGTTGACACCTAgccgggcgcagtggctcatgcctg
i saiBol1.JH378108          C 0 I 1
s cebCap1.NW_016107610v1       611030 53 -   2910086 GTTAAGAACGCATTAAAAGTTGACACCCAgccgggcgcggtggctcacgcctg
i cebCap1.NW_016107610v1    C 0 I 47
s aotNan1.NW_018505940v1     40633452 53 +  42888418 CTTAAGAACGCATTAAAAGTTGACACCTAgccgggcgcagtggctcacgcctg
i aotNan1.NW_018505940v1    C 0 C 0
e micMur3.chr9              113264077 465 + 116334831 I
e proCoq1.NW_012142813v1         8805 566 +     80520 I
e mm10.chr7                  81344451 226 + 145441459 I
e dasNov3.JH570731            1792469  0 +   3943991 C
e canFam3.chr3               54402491 305 +  91889043 I
e otoGar3.GL873530             626554 338 -  36342412 I

a score=357264.000000
s hg38.chr15_KI270850v1_alt    328536 50 +    430880 taatcccagcaatttgggaggccgaggcgggcggatcgcttgaggtcagg
s panTro5.chr15              63481947 50 +  83230942 taatcccagcaatttgggaggccgaggcgggcggatcgcttgaggtcagg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80439333 50 +  99763055 taatcccagcaatttgggaggccgaggcgggcggatcgcttgaggtcagg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        39195 50 -   1709092 taatcccagtaatttgggaggccgaggcgggcggatcgcttgaggtcagg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191691 50 - 121039945 taatccaagcaagttgggaggccgaggtgggcggatcgcttgaggtcagg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879915 41 + 169600520 taatcccaacaatttgggaggc---------cggatcgcttgaggtcagg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406620 41 - 171882078 taatcccaacaatttgggaggc---------cggatcgcttgaggtccgg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        17097 41 -   2311642 taatcccaacaatttgggaggc---------cggatcgcttgaggtcagg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        15246 41 -   1987038 taatcccaacaatttgggaggc---------cggatcgcttgaggtcagg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21095742 50 -  24206276 taattccaacaatttgggaggccggggagggcggatcgtttgaagtcagg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        10947 41 -   1397330 taatcccaacaatttgggaggc---------cggatcgcttgaggtcagg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        34313 50 -   1784207 taatcccaacaatctgggaggccgaggaaggcggatcgcttgaggtcagg
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22231295 50 + 158406734 taatcgcagcactttgggaggccgaggcaagcggatcgcatgaggtcagt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50467382 50 +  54856640 taatcccagcactttgggaggccgaggcaggcggatcacctgaggccagt
i saiBol1.JH378108          I 1 C 0
s aotNan1.NW_018505940v1     40633505 50 +  42888418 taatcccagcactttgggaggccgaggcaggcggatcgcctgaggtcagt
i aotNan1.NW_018505940v1    C 0 C 0
e micMur3.chr9              113264077 465 + 116334831 I
e proCoq1.NW_012142813v1         8805 566 +     80520 I
e mm10.chr7                  81344451 226 + 145441459 I
e dasNov3.JH570731            1792469  0 +   3943991 C
e canFam3.chr3               54402491 305 +  91889043 I
e cebCap1.NW_016107610v1       611083 47 -   2910086 I
e otoGar3.GL873530             626554 338 -  36342412 I

a score=206864.000000
s hg38.chr15_KI270850v1_alt    328586 24 +    430880 tgttcgagaccagcctggtcaaca
s panTro5.chr15              63481997 24 +  83230942 tgttcgagaccagcctggtcaaca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80439383 24 +  99763055 tgttcgagaccagcctggtcaaca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        39245 24 -   1709092 tgttcgagaccagcgtggccaaca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191741 24 - 121039945 agttcgagaccagcctggccaaca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879956 24 + 169600520 agttcgagaccagcctggacaaca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406661 24 - 171882078 agttcgagaccagcctggacaaca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        17138 24 -   2311642 agttcgagaccagcctggacaaca
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        15287 24 -   1987038 agttcgagaccagcctggacaaca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21095792 24 -  24206276 agttcgagaccagcctggacaaca
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        10988 24 -   1397330 agttcgagaccagcctggacaaca
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        34363 24 -   1784207 agttcgagaccagcctggccaaca
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22231345 24 + 158406734 agttccagatccgcctggccaaca
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50467432 24 +  54856640 agttccagatcagcctggccaaca
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40633555 24 +  42888418 agttccagatcagcctggccaaca
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1792469 20 +   3943991 TGTCCAA----ATCCTAGTCAACA
i dasNov3.JH570731          C 0 I 22
e micMur3.chr9              113264077 465 + 116334831 I
e proCoq1.NW_012142813v1         8805 566 +     80520 I
e mm10.chr7                  81344451 226 + 145441459 I
e canFam3.chr3               54402491 305 +  91889043 I
e cebCap1.NW_016107610v1       611083 47 -   2910086 I
e otoGar3.GL873530             626554 338 -  36342412 I

a score=66078.000000
s hg38.chr15_KI270850v1_alt    328610 16 +    430880 ttgtgaaaccctgttg
s panTro5.chr15              63482021 16 +  83230942 ttgtgaaaccctgttg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80439407 16 +  99763055 ttgtgaaaccctgttg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        39269 15 -   1709092 ttgtgaaaccctg-tg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191765 15 - 121039945 ttgtgaaaccccg-tc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879980 14 + 169600520 tggtgaaacccg--tc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406685 14 - 171882078 tggtgaaacccg--tc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        17162 14 -   2311642 tggtgaaacccg--tc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        15311 14 -   1987038 tggtgaaacccg--tc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21095816 14 -  24206276 tggtgaaacccg--tc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        11012 14 -   1397330 tggtgaaacccg--tc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        34387 14 -   1784207 cggtgaaacccg--tc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22231369 15 + 158406734 cggtgacaccccg-tc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50467456 15 +  54856640 cagcgaaaccccg-tc
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40633579 15 +  42888418 cggtgaaacccca-tc
i aotNan1.NW_018505940v1    C 0 C 0
e micMur3.chr9              113264077 465 + 116334831 I
e proCoq1.NW_012142813v1         8805 566 +     80520 I
e mm10.chr7                  81344451 226 + 145441459 I
e dasNov3.JH570731            1792489 22 +   3943991 I
e canFam3.chr3               54402491 305 +  91889043 I
e cebCap1.NW_016107610v1       611083 47 -   2910086 I
e otoGar3.GL873530             626554 338 -  36342412 I

a score=1589678.000000
s hg38.chr15_KI270850v1_alt    328626 196 +    430880 tctactaaaaatacaaaaattagccgagtgtggtagcacgtgcctctaatcccagctactgggaaggctgaggcatgacaatcgcttgaacccgggagacggaggttgcagtgagccgagatggcgccactgcactctagcctgggcgccagggcaagattccgtctcaaaaaaaaaag-----------aaaaaa-aagaaagaaaa
s panTro5.chr15              63482037 196 +  83230942 tctactaaaaatacaaaaattagccaagtgtggtagcacgtgcctctaatcccagctactgggaaggctgaggcatgacaatcgcttgaacccgggagacggaggttgcagtgagccgagatggcgccactgcactctagcctgggcgccagggcaagattccgtctcaaaaaaaagaa-----------aaaaaa-aagaaagaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80439423 196 +  99763055 tctactaaaaatacaaaaattagccaagtgtggtagcacgtgcctctaatcccagctactgggaaggctgaggcatgacaatcgcttgaacccgggagacggaggttgcagtgagccgagatggcgccactgcactctagcctgggcgccagggcaagattccgtctcaaaaaaaagaa-----------aaaaaa-aagaaagaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        39284 194 -   1709092 tctactaaaaatacaaaaattagccgggtgtggtagcacgtgcctctaatcccagctactgggaaggctgaggcatgacaatcgcttgaacccgggagacggaggttgcggtgagccgagatggcgccactgcactctagcctgggcgccagggcaagattccgtctcaaaaaaaag-------------aaaaaa-aagaaagaaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191780 197 - 121039945 tccactaaaaatacaaaaattagccaagtgtggtagcacgtgcctgttatcccagctactcggaaggctagggcatgacaatcgcttgaacccgggaggcggaggttgcagtgagccgagatggcaccactgcactctagcctgggcgccagagcaagattccgtctcaaaaaaaaaaa-----------aaaaaagaaaagagaaga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60879994 204 + 169600520 tctactaaaaacacaaaaattaggcgggcgtggtggcacgtgcctgtgatcccagctactcggaaggcagacgcaggagaatcgcttgaacccgggaggcagaggttgcagtgggccgagatagcgccactg--ctctagcctgggcgccagggcaagattccctctcaaaaaaaaaaa-gaaagaaaaaaaaaGG-AGAAGAAAAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406699 204 - 171882078 tctactaaaaacgcaaaaattaggcgggcgtggtggcatgtgcctgtgatcccagctactcggaaggcagacgcaggagaatcgcttgaacccgggaggcagaggttgcagtgggccgagatcgcgccactg--ctctagcctgggcgccagggcaagattccctctcaaaaaaaaaaa-gaaagaaagaaaaaGG-AGAAGAAAAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        17176 204 -   2311642 tctactaaaaacacaaaaattaggcgggcgtggtggcacgtgcctgtgatcccagctactcggaagccagacgcaggagaatcgcttgaacccgggaggcagaggttgcagtgggccgagatcgcgccactg--ctctagcctgggcgccagggcaagattccctctcaaaaaaaaaaa-gaaagaaaaaaaaaGG-AGAAGAAAAGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        15325 201 -   1987038 tctactaaaaacacaaaaattagacgggcgtggtggcacgtgcctgtgatccgagctactcggaaggctgacgcaggagaatcgcttgaacccgggaggcagaggttgcagtgggccgagatcgcgccactg--ctctagcctgggcgccagggcaagattccctctcaaaaaaaaa----agaaaaaaaaaaaGG-AGCAGAAAAGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21095830 203 -  24206276 tctactaaaaacacaaaaattaggcgggcgtggtggcacgtgcctgtgatcccagctactcggaaggctgacgcaggagaatcgcttgaacccgggaggcagaggttgcagtgggccgagatcgcgccactg--ctctagcctgggcgccacggcaagattccgtctcaaaaaaaaaag--aaagaaaaaaaaaGG-AGAAGAAAAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        11026 205 -   1397330 tctactaaaaacacaaaaattagacgggcgtggtggcacgtgcctgtgatcccagctactcggaaggctgacgcaggagaatcgcttgaacccgggaggcagaggttgcagtgggccgagatcgcgccactg--ctctagcctgggcgccagggcaagattccctctcaaaaaaaaaagaaaaaaaaaaaaaaaGG-AGCAGAAAAGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        34401 197 -   1784207 tctactaaaaacacaaaaattaggcgggcgtggtggcacgtgcctgtgatcccagctactcggaaggctgacgcaggagaatcgcttgaacccgggaggcggaggttgcagtgggctgagatcgcgccactg--ctctagcctgggcgccaggacaagattacgtctcaaaaaaaaaaa--------gaaaaaaaa-agaagaaaaGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22231384 184 + 158406734 tctactaaaagtactaaaattagcaggggatggtggcgcgcgcctgtagtcccagctactcgggaggatgaggcaggagaatcacttgaacccgagaggtggaggttgcagtgagcccagatcgcgctactgcactccggcctggaggacagagcaaga--ctgtctcaaa-------------------aaaagg-aaaa--agaaa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50467471 188 +  54856640 tctactaaaagtaccaaaattagccgggggtggtggcgcgcgcctgtaatcccagctactcgggaggatgaggcaggagaatcacttgaacccgggaagtggaggttgcagtgagcccagatcgcgccactgcactccggcctgtacgacagagcaagactctgtctcaaa-------------------aaaaaa-aaaaacaaaaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       611130 173 -   2910086 tctactaaaagtaccaaaattagcaaagggtggtggcgcgcgcctgtaatcccagctactcgggaggatgaggtaggagaatcacctgaacccgggaggtggaggttgcagtgcgcccagatcgcgccactgcactccggcctggaggacacagcaagactctgtctc-----------------------------------aaaaa
i cebCap1.NW_016107610v1    I 47 C 0
s aotNan1.NW_018505940v1     40633594 188 +  42888418 tgtactaaaagtaccaaaattagcagggggtggtggcgcgtgcctgtaatcccagctactcgggaggatggggcaggagaatcacttgaacccgggaggcggaggttgcagtgagcccagatcgcgccactgcactccggcctggacgacagagcaagactctgcctcaaa-------------------aaaaga-aaaaaaaaaaa
i aotNan1.NW_018505940v1    C 0 C 0
e micMur3.chr9              113264077 465 + 116334831 I
e proCoq1.NW_012142813v1         8805 566 +     80520 I
e mm10.chr7                  81344451 226 + 145441459 I
e dasNov3.JH570731            1792489  22 +   3943991 I
e canFam3.chr3               54402491 305 +  91889043 I
e otoGar3.GL873530             626554 338 -  36342412 I

a score=54001.000000
s hg38.chr15_KI270850v1_alt    328822 6 +    430880 aaGTT-G
s panTro5.chr15              63482233 6 +  83230942 aagTT-G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80439619 6 +  99763055 aagTT-G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        39478 6 -   1709092 aaGTT-G
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191977 6 - 121039945 aAGTT-G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60880198 6 + 169600520 AAGCT-G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406903 6 - 171882078 AAGCT-G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        17380 6 -   2311642 AAGCT-G
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        15526 6 -   1987038 AAGCT-G
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21096033 6 -  24206276 AAGCT-G
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        11231 6 -   1397330 AAGCT-G
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        34598 6 -   1784207 AAACT-G
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22231568 6 + 158406734 aTGTT-G
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50467659 6 +  54856640 aaGCT-G
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       611303 6 -   2910086 aaGTT-G
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40633782 7 +  42888418 aaGTTAG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             626892 6 -  36342412 AAACT-G
i otoGar3.GL873530          I 338 C 0
e micMur3.chr9              113264077 465 + 116334831 I
e proCoq1.NW_012142813v1         8805 566 +     80520 I
e mm10.chr7                  81344451 226 + 145441459 I
e dasNov3.JH570731            1792489 22 +   3943991 I
e canFam3.chr3               54402491 305 +  91889043 I

a score=104867.000000
s hg38.chr15_KI270850v1_alt    328828 9 +    430880 ACAACTAAA
s panTro5.chr15              63482239 9 +  83230942 ACAACTAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80439625 9 +  99763055 ACAACTAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        39484 9 -   1709092 ACAACTAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191983 9 - 121039945 ACAACTAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60880204 9 + 169600520 ACACCTAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406909 9 - 171882078 ACACCTAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        17386 9 -   2311642 ACACCTAAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        15532 9 -   1987038 ACACCTAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21096039 9 -  24206276 ACACCTAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        11237 9 -   1397330 ACACCTAAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        34604 9 -   1784207 ACACCTAAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22231574 9 + 158406734 ACACCTAAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50467665 9 +  54856640 ACACCTAAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       611309 9 -   2910086 ACACCTAAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40633789 9 +  42888418 ACACCTAAA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             626898 9 -  36342412 ACATCCAAA
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH570731            1792511 9 +   3943991 ACAAACAAA
i dasNov3.JH570731          I 22 C 0
e micMur3.chr9              113264077 465 + 116334831 I
e proCoq1.NW_012142813v1         8805 566 +     80520 I
e mm10.chr7                  81344451 226 + 145441459 I
e canFam3.chr3               54402491 305 +  91889043 I

a score=1731226.000000
s hg38.chr15_KI270850v1_alt    328837 171 +    430880 AGCAACGTAGCTTCAAAGCAAGAGGTCTGACGGTGGCTACC--------TTCGACCCAGGGTCACCG--CGGCCAGTCA----TGACACAGGCCTAAG---TTCACAAC-AGAAATCCTGCACACGCAGAGCTCTAGCCCTTCTCCGGGACACCAGGGAGTCTCAGGCTAACGAAA-CCACCAAGGCACC
s panTro5.chr15              63482248 171 +  83230942 AGCAACGTAGCTTCAAAGCAAGAGGTCTGACGGTGGCTACC--------TTCGACCCAGGGTCACCG--CGGCCAGTCA----TGACACAAGCCTAGG---TTCACAAG-AGAAATCCTGCACACGCAAAGCTCTAGCCCTTCTCCGGGACACCAGGGAGTCTCAGGCTAACGAAA-CCACCAAGGCACC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80439634 171 +  99763055 AGCAACGTAGCTTCAAAGCAAGAGGTCTGACGGTGGCTACC--------TTCGACCCAGGGTCACCG--CGGCCAGTCA----TGACACAAGCCTAGG---TTCACAAG-AGAAATCCTGCACACGCAAAGCTCTAGCCCTTCTCCGGGACACCAGGGAGTCTCAGGCTAACTAAA-CCACCAAGGCACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        39493 171 -   1709092 AGCAACGTAGCTTCAAAGCAAGAGGTCTGACGGTGGCTACC--------TTCGACCCAGGGTCACCG--CGGCCAGTCA----TGACACAGGCCTAAG---TTCACAAC-AGAAATCCTGCACGCGCAGAGCTCTAGCCCTTCTCCGGGACACCAGGGAGTCTCAGGCTAACGAAA-CCACCAAGGCACC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17191992 171 - 121039945 CGCAACGTAGTTTCAAGGCAAGAGATCTGACGGTGGCTACC--------TTCGACCCAGTGTCACCG--CGGCCAGCCA----TGACACAGGCCTAAG---TTCACAAC-AGAAATCCTGCACACGCAGAGCTCTAGCCCTTCTCCGGTACACCACTGAGTCTCAGGATAATGAAA-CCACCACGGCACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60880213 170 + 169600520 AGCAACGTAGCTACAAGGCAAGAGGTCCGACGGTGGCTACC--------TCCAACCCAGTGTCACCG--CGGCCAGTCA----TGACACAAGCCTAAG---TTCACAAC-GGAAATCCTGCACACGCAGAGCTCTAGCCCTCCTCCGGGACACCAGGGAG-CTCAGGCTAACGAAA-CCACCACAGTACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108406918 170 - 171882078 AGCAACGTAGCTACAAGGCAAGAGGTCTGACGGTGGCTACC--------TCCAACCCAGTGTCACCG--CGGCCAGTCA----TGACACAAGCCTAAG---TTCACAAC-GGAAATCCTGCACACGCAGAGCTCTAGCCCTCCTCCGGGACACCAGGGAG-CTCAGGCTAACGAAA-CCACCACAGTACC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        17395 170 -   2311642 AGCAACGTAGCTACAAGGCAAGAGGTCTGACGGTGGCTACC--------TCCAACCCAGTGTCACCG--CGGCCAGTCA----TGACACAAGCCTAAG---TTCACAAC-GGAAATCCTGCACACGCAGAGCTCTAGCCCTCCTCCGGGACACCAGGGAG-CTCAGGCTAACGAAA-CCACCACAGTACC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        15541 170 -   1987038 AGCAACGTAGCTACAAGGCAAGAGGTCTGACGGTGGCTACC--------TCCAACCCAGTGTCACCG--CGGCCAGTCA----TGACACAAGCCTAAG---TTCACAAC-GGAAATCCTGCACACGCAGAGCTCTAGCCCTCCTCCGGGACACCAGGGAG-CTCAGGCTAACGAAA-CCACCACAGTACC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21096048 170 -  24206276 AGCAACGTAGCTACAAGGGAAGAAGTCTGACGGTGGCTACC--------TCCAACCCAGTGTCACCG--CGGCCAGTCA----TGACACAAGCCTAAG---TTCACAAC-GGAAATCCTGCACACGCAGAGCTCTAGCCCTCCTCCGGGACACCAGGGAG-CTCAGGCTAACGAAA-CCACCACAGTACC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        11246 170 -   1397330 AGCAACGTAGCTACAAGGCAAGAGGTCTGACGGTGGCTACC--------TCCAACCCAGTGTCACCG--CGGCCAGTCA----TGACACAAGCCTAAG---TTCACAAC-GGAAATCCTGCACACGCAGAGCTCTAGACCTCCTCCGGGACACCAGGGAG-CTCAGGCTAACGAAA-CCACCACAGTACC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        34613 171 -   1784207 AGCAACGTAGCTACAAGGCAAGAGCTCTGATGGTGGCTACC--------TCCAACCCAGTGTCACTG--CGGCCAGTCA----TGACACAAGCCAAAG---TTCACAAC-GGAAATCCTGCACACGCAGAGCTCTAGCCCTCCTCCGGGACACCAGGGAGTCTCAGGCTAACGAAA-CCACCACAGTACC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22231583 171 + 158406734 AGCAACGTAGCTTCAAAGCAAGAGGTCTGACGATGGCTACC--------TTCGACCCAGTGTCACCG--CGGCCAGTCA----TAACACAAGCCTAAC---TTCACAAC-AGAAATCCTGCACACGCAAAGTTCTAGCCCTTCTCCGGGGCACTAGGGAGGCCCAGGCTAATGAAA-CCACCACGGCACC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50467674 171 +  54856640 AGCAACGTAGCTTCAAGGAAAGAGGTCTGACGATGGCTACC--------TTCGACCCAGTGTCACCG--CGGCCAGTCA----TGACACAAGCCTAAC---TTGACAAC-AGAAATCCTGCACACGCCAAGTTCCAGCCCTTCTCCGGGGCACTAGGGAGGCTCAGGCTAATGAAA-CCACCACGGCACA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       611318 171 -   2910086 AGCAACGTAGCTTCAAGGCAAGAGGTCTGACGATGGCTACC--------TTCGACCCAGTGTCACCG--CGACCAGTCA----TGACACAAGCCCAAG---TTCACAAC-AGAAATCCTGCGCACGCAAAGTTCTAGCCCTTCTCCGGGGCACTAGGGAGGCTCAGGCTAATGAAA-CCACCACGGCACC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40633798 171 +  42888418 AGCAATGTAGCTTTAAGGCAAGAGGTCTGACGATGGCTACC--------TTCGACCCAGTGTCACCG--CGGCCAGTCA----TGACACAAGCGTAAC---TTCACAAC-AGAAATCCTGCACACGCAAAGTTCTAGCCCTTCTCCGGGGCACTAGGGAGGCTCAGGCTAATGAAA-CCACCACGGCACC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             626907  88 -  36342412 AGCAACAGGGCTTCAAAGCAAGAGGTCTGGCGGCAGCCGCC--------TCC-----------------------------------------------------------GGGAACCTGCACACGCGAGCCCTTAGCTCGTCTCCGGGGCACAG-----------------------------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81344677 139 + 145441459 AGCAGTAAGGTTTTGAGGCCGGAGCTCTGCCTTCAGCTACCGTAAGGAGCCCGAACTAAGACCACGT--CGGCAAAACC----CCACTGTGGCCAAG----------------------GCACAC------CTCCAGCCCTTCGGCGGGCCGTCTGGGGG--------GAGCGGAG-GCACC--------
i mm10.chr7                 I 226 C 0
s dasNov3.JH570731            1792520 180 +   3943991 AGCAATCAGCCTTTCAAGCAGGGGGTCTGACTGTGGTTAAC--------TCCAAGTTACGACCACCAGTCAACCAATCAACTGTAACCCAAACCCAAGATAATCGCGACAAGAAACCCTGCAAAGGCAAACCTCCAGCACGCCCC--GGGCCTCACGCAGACTCGCAGGAAGGAAACCCACCAGCGCAGA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113264077 465 + 116334831 I
e proCoq1.NW_012142813v1         8805 566 +     80520 I
e canFam3.chr3               54402491 305 +  91889043 I

a score=319593.000000
s hg38.chr15_KI270850v1_alt    329008 30 +    430880 GTCTCTTCCCGAGTCGGAGGGCGGCAGAGC
s panTro5.chr15              63482419 30 +  83230942 GTCTCTTCCCGAGTCGGAGGGCGGCAGAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80439805 30 +  99763055 GTCTCTTCCCGAGTCGGAGGGCGGCAGAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        39664 30 -   1709092 GTCTCTTCCCGAGTCGGAGGGCGGCAGAGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17192163 30 - 121039945 GTCTCTTCCCGAGTCTGAGGACGGCAAACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60880383 30 + 169600520 GTCTCTTACAGAGTCGGAGGGCGGCAGAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108407088 30 - 171882078 GTCTCTTACAGAGTCGGAGGGCGGCAGAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        17565 30 -   2311642 GTCTCTTACAGAGTCGGAGGGCGGCAGAAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        15711 30 -   1987038 GTCTCTTACAGAGTCGGAGTGCGGCAGAGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21096218 30 -  24206276 GTCTCTTACAGAATCGGAGGGCGGCAGAGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        11416 30 -   1397330 GTCTCTTACAGAGTCGGAGGGCGGCAGAGC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        34784 30 -   1784207 GTCTCTTACAGAGTCGGAGGGCGGCAGAGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22231754 30 + 158406734 GTCTCTTCCCGAGTCGGAGGGCGGCAGAGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50467845 30 +  54856640 GTCTCTTCCCGAGTCGGAGGGCGGCAGAGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       611489 30 -   2910086 ATCTCTTCCCGAGTCGGAGGGCGGCAGAAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40633969 30 +  42888418 GTCTCTTCCCGAGTCGGAGGGCGGCAGAGC
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1         9371 30 +     80520 GTCTCTTCGCGAGTCGGAGGGCAGCAGAGC
i proCoq1.NW_012142813v1    I 566 I 67
s otoGar3.GL873530             626995 13 -  36342412 ---------CGAGCCGTAGGGC--------
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81344816 11 + 145441459 GGCCC-------------GGGCAG------
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1792700 15 +   3943991 GCTCCTTCCCGAGCC---------------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113264077 465 + 116334831 I
e canFam3.chr3               54402491 305 +  91889043 I

a score=248606.000000
s hg38.chr15_KI270850v1_alt    329038 39 +    430880 ACACAAACAGATCGCGG----------------------AGCCCCGGAGGCCGAGGAAGGC---
s panTro5.chr15              63482449 39 +  83230942 ACACAGACAGACCGCGG----------------------AGCCCCGGAGGCCGAGGAAGGC---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80439835 39 +  99763055 ACACAAACAGACCGCGG----------------------AGCCCCGGAGGCCGAGGAAGGC---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        39694 39 -   1709092 ACACAAACAGACCGCGG----------------------AGCCCCGGAGGCCGAGGAAGGC---
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17192193 39 - 121039945 ACACAAACAGACCGCGG----------------------GGCCCCGGAGGCCAAGGAAGCC---
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60880413 39 + 169600520 ACATAAACAGGCCGCGG----------------------GGCCCCGGAGACCGAGGAAGCT---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108407118 39 - 171882078 ACATAAACAGGCCGCGG----------------------GGCCCCGGAGACCGAGGAAGCT---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        17595 39 -   2311642 ACATAAACAGGCCGCGG----------------------GGCCCCGGAGACCGAGGAAGCT---
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        15741 38 -   1987038 ACATAAACAGGCCGC-G----------------------GGCCCCGGAGACCGAGGAAGCC---
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21096248 39 -  24206276 ACATAAACAGGCCGCGG----------------------GGCCCCGGAGGCCGAGGAAGCC---
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        11446 38 -   1397330 ACATAAACAGGCCGC-G----------------------GGCCCCGGAGACCGAGGAAGCC---
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        34814 39 -   1784207 ACATAAACAGGCTGCGG----------------------GGCCCCGGAGGCCGAGGAAGCC---
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22231784 61 + 158406734 ACACAAACAGGCCGCGGGACCCCGGGTCTCCACCGTCCAGGCCCTGGAGGCCGAGAGAGCC---
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50467875 22 +  54856640 ACACAAACAGGCCGCGG---------------------------------------GAGCC---
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       611519 21 -   2910086 ACACTAACAGG-CGCGG---------------------------------------GAGCC---
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40633999 61 +  42888418 ACACAAACAGGCCGCGGGACCCCGGGTCTCCACTGTCTAGGCCCTGGAGGCCGAGGGAGCC---
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             627008 33 -  36342412 ------AAAAAATGCGG----------------------GATCACGGGGGTTGGCGGGGAC---
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81344827 20 + 145441459 ----------------G----------------------CTCTCCGGCGGCCGCG---GCC---
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1792715 34 +   3943991 ----CCACAAGCTCCGA----------------------GGGC-TGGAGGCCG---GCGCCCAC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113264077 465 + 116334831 I
e proCoq1.NW_012142813v1         9401 67 +     80520 I
e canFam3.chr3               54402491 305 +  91889043 I

a score=36216.000000
s hg38.chr15_KI270850v1_alt    329077 3 +    430880 CCG
s panTro5.chr15              63482488 3 +  83230942 CCG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80439874 3 +  99763055 CCG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        39733 3 -   1709092 CCG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17192232 3 - 121039945 CCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60880452 3 + 169600520 CCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108407157 3 - 171882078 CCG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        17634 3 -   2311642 CCG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        15779 3 -   1987038 CCG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21096287 3 -  24206276 CCG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        11484 3 -   1397330 CCG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        34853 3 -   1784207 CCG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22231845 3 + 158406734 CCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50467897 3 +  54856640 CCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       611540 3 -   2910086 CCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40634060 3 +  42888418 CCA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             627041 3 -  36342412 CCA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81344847 3 + 145441459 CCC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54402796 3 +  91889043 CCA
i canFam3.chr3              I 305 C 0
s dasNov3.JH570731            1792749 3 +   3943991 TCA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113264077 465 + 116334831 I
e proCoq1.NW_012142813v1         9401 67 +     80520 I

a score=3700615.000000
s hg38.chr15_KI270850v1_alt    329080 183 +    430880 ACTCACCCTGCTATCTTGTTGCGGAGCTTTTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAGTACTTTTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGGACAGGATCAC
s panTro5.chr15              63482491 183 +  83230942 ACTCACCCTGCTATCTTGTTGCGGAGCTTTTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAGTATTTCTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGGACAGGATCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80439877 183 +  99763055 ACTCACCCTGCTATCTTGTTGCGGAGCTTTTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAGTACTTTTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGGACAGGATCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        39736 183 -   1709092 ACTCACCCTGCTATCTTGTTGCGGAGCTTTTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAGTACTTTTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGGACAGGATCAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17192235 183 - 121039945 ACTCTCCCTGCTATCTTGTTGCGGAGCTTTTTGCTGGGGATAAGGGGTATCTCCTCCCACACGCTCTTGTTCGTGTGGAAGACATTGCCCATGCCCGTGTATTACTTTTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAATGCGGCCCTGCGGCT-GGATAGGACCGGATCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60880455 183 + 169600520 ACTCACCCTGCTATCTTGTTGCGGAGCTTCTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAATACTTCTCTATGATAACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGCACAGGATCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108407160 183 - 171882078 ACTCACCCTGCTATCTTGTTGCGGAGCTTCTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAATACTTCTCTATGATAACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGCACAGGATCAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        17637 183 -   2311642 ACTCACCCTGCTATCTTGTTGCGGAGCTTCTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAATACTTCTCTATGATAACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGCACAGGATCAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        15782 183 -   1987038 ACTCACCCTGCTATCTTGTTGCGGAGCTTCTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAGTACTTCTCTATGATGACCCGGGCCGCCTTCTTCACAGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGCACAGGATCAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21096290 183 -  24206276 ACTCACCCTGCTATCTTGTTGCGGAGCTTCTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAGTACTTCTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGCACAGGATCAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        11487 183 -   1397330 ACTCACCCTGCTATCTTGTTGCGGAGCTTCTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAGTACTTCTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGCACAGGATCAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        34856 183 -   1784207 ACTCACCCTGCTATCTTGTTGCGGAGCTTCTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGACGCGTGTAGTACTTCTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGCACAGGATCAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22231848 183 + 158406734 ACTCACCCTGCTATCTTGTTGCGTAGCTTCTTGCTAGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAGTACTTTTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGGACAGGATCAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50467900 183 +  54856640 ACTCACCCTGCTATCTTGTTGCGGAGCTTCTTGCTAGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAGTACTTTTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGGACAGGATCAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       611543 183 -   2910086 ACTCACCCTGCTATCTTGTTGCGGAGCTTCTTGCTAGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCCAGGCGCGTGTAGTACTTTTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGGACAGGCTCAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40634063 183 +  42888418 ACTCACCCTGCTATCTTGTTGCGGAGCTTCTTGCTAGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCATTGCCCAGGCGCGTGTAGTACTTTTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAGGACAGGATCAC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113264542 183 + 116334831 ACTCACCCTGCTATCTTGTTGCGGAGCTTCTTGCTGGGAATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCATTTCCCAGACGCGTGTAATACTTCTCGATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGAGGAT-GGAGAGGACAGGGTCAC
i micMur3.chr9              I 465 C 0
s proCoq1.NW_012142813v1         9468 183 +     80520 ACTCACCCTGCTATCTTGTTGCGGAGCTTCTTGCTGGGAATAATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCATTTCCCAGACGCGTGTAGTACTTCTCGATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGTGGGC-GGAGAGGACAGGGTCAC
i proCoq1.NW_012142813v1    I 67 I 87
s otoGar3.GL873530             627044 183 -  36342412 ACTCACCCGGCTATCTTGTTGCGGAGCTTCTTGCTGGGAATGATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGAAAGTCGTTGCCCAGACGTGTGTAGTACTTCTCTATGATGACCCGGGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCGGGT-GGAGAAGAAAGGGTCAC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81344850 183 + 145441459 ACTCACCCGGCTATCTTGTTCCGAAGCTTCTTGCTGGGGATAATGGCGATCTCCTCGCACACGCGCTTGTTGGTGTGGAAGTCATTACCCAGACGCGTGTAGTACTTCTCGATGATGACCCGGGCAGCCTTCTTCACGGTCTTGGTGCGAACGCGGCCCTGAGGGT-GGAGAGGGCAAAGTCAC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54402799 184 +  91889043 GCTCACCCTGCGATCTTGTTGCGGAGCTTCTTGCTGGGGATGATGGCAATCTCCTCGCACACGCGCTTATTGGTGTGGAAGTCGTTCCCCAGGCGCGTGTAGTACTTCTCGATGATGACTCGGGCCGCCTTCTTCACGGTTTTGGTGCGCACGCGGCCCTGCGGGTGGGAGAACACGGCGTCAC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1792752 183 +   3943991 ACCCACCCTGCTATCTTGTTCCGCAGCTTTTTGCTGGGAATGATGGCGATCTCCTCGCACACGCGCTTGTTCGTGTGGAAGTCGTTGCCTAGGCGCGTGTAGTACTTCTCAATGATGACCCGAGCCGCCTTCTTCACGGTTTTGGTGCGAACGCGGCCCTGCAGGC-GGAGAGCACCGGGTCAC
i dasNov3.JH570731          C 0 C 0

a score=171367.000000
s hg38.chr15_KI270850v1_alt    329263 14 +    430880 TCACGAGCCAGCGC
s panTro5.chr15              63482674 14 +  83230942 TCACGAGCCAGCGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80440060 14 +  99763055 TCACGAGCCAGCGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        39919 14 -   1709092 TCACGAGCCAGCGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17192418 14 - 121039945 TCGCGAGCCAGCTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60880638 14 + 169600520 TCACGAGCCAGTGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108407343 14 - 171882078 TCACGAGCCAGTGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        17820 14 -   2311642 TCACGAGCCAGTGC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        15965 14 -   1987038 TCACGAGCCAGTGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21096473 14 -  24206276 TCACGAGCCAGTGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        11670 14 -   1397330 TCACGAGCCAGTGC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        35039 14 -   1784207 TCACGAGCCAGCGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22232031 14 + 158406734 TCATTAGCCACCGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50468083 14 +  54856640 TCACGAGCCATCGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       611726 14 -   2910086 TCACGAGCCAACGC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40634246 14 +  42888418 TCACGAGCCATCGC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113264725 13 + 116334831 -CGCGAGCCAGCGC
i micMur3.chr9              C 0 I 73
s otoGar3.GL873530             627227 14 -  36342412 CCGGGAGCGGGCGG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81345033 13 + 145441459 CGGGGAGCCCGCG-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54402983 14 +  91889043 CCGCGAGCCACGAC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1792935 14 +   3943991 TCGCGAGTCGGGGC
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1         9651 87 +     80520 I

a score=841733.000000
s hg38.chr15_KI270850v1_alt    329277 109 +    430880 AACCTTCTGGGAAGAGTGCGGCGCCGAGC-CCCGGCCGGTGTGGTTGGGGACCGCCGGCTGCGCTGAGCCGGAGA--GGGCCCGGCTAAACAGTGCCGGGCGCCGGGCTTAA
s panTro5.chr15              63482688 109 +  83230942 AACCTTCTGGGAAGAGTGCGGCGCCGAGC-CCCGGCCGGTGTGGTTGGGGACCGCCGGCTGCGCTGAGCCGGAGA--GGGCCCGGCTAAACAGTGCCGGGCGCCGGGCTTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80440074 109 +  99763055 AACCTTCTGGGAAGAGTGCGGCGCCGAGC-CCCGGCCGGTGTGGTTGGGGACCGCCGGCTGCGCTGAGCCGGAGA--GGGCCCGGCTAAACAGTGCCGGGCGCCGGGCTTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        39933 107 -   1709092 AACCTTCTGGGAAGAGTGCGGCGCCGAGC-CCCGGCCGGTGTGGTTGGGGACCGCCGGCTGCGCTGAGCCG--GA--GGGCCCGGCTAAACAGTGCCGGGCGCCGGGCTTAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17192432 110 - 121039945 GTCCTTCTGGGAATAGTGCTTCTCCCAATGCCCGGTCCGTGTGGTTGGGCACTCTGCCTTGCATCGAGGCTGATA--AGTACCATATGCATAGATGGTGTTGCCTATATCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60880652 111 + 169600520 AACCTTTTGGGAAGAGTGCCGCACCGAGC-CCCGGCGGGTGTGGTTGGGGACCGCCGGCTGCGATGAGCCGGAGAGGGGGCCCAGCTGGGCACTGCCGGACGCCGGGCTCAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108407357 111 - 171882078 AACCTTTTGGGAAGAGTGCCGCACCGAGC-CCCGACGGGTGTGGTTGGGGACCGCCGGCTGCGATGAGCCGGAGAGGGGGCCCGGCTGGGCACTGCCGGACGCCGGGCTCAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        17834 111 -   2311642 AACCTTTTGGGAAGAGTGCCGCACCGAGC-CCCGGCGGGTATGGTTGGGGACCGCCGGCTGCGATGAGCCGGAGAGGGGGCCCGGCTGGGCACTGCCGGACGCCGGGCTCAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        15979 111 -   1987038 AACCTTTTGGGAAGAGTGCCGCACCGAGC-CCCGGCGGGTGTGGTTGGGGACCGCCGGCTGCGATGAGCCGGAGAGGGGGCCCGGCTGGGCACTGCCGGACGCCGGGCTCAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21096487 111 -  24206276 AACCTTTTGGGAAGAGTGCCGCACCGAGC-CCCGGCGGGTGTGGTTGGGGACCGCCGGCTGCGATGAGCCGGAGAGGGGGCCCGGCTGGGCACTGCCGGACGCCGGGCTCAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        11684 111 -   1397330 AACCTTTTGGGAAGAGTGCCGCACCGAGC-CCCGGCGGGTGTGGTTGGGGACCGCCGGCTGCGATGAGCCGGAGAGGGGGCCCGGCTGGGCACTGCCGGACGCCGGGCTCAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        35053 111 -   1784207 AACCTTTTGGGAAGATTGCCGCACCGAGC-CCCGGCGGGTGTGGTTGGGGACCGCCGGCTGCGCTGAGCCGGAGAAGGGGCCCGGCTGGGCAGTGACGGACGCCGGGCTCAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22232045 100 + 158406734 AAACTTCCGGGAAGAGTGCGACTCCAGGC-CCCAGCGGGAGTGG-TGGAGGCTGCCGGCTGCGCTG-------GA--GGGCCCGGCTGGGCAGTA-CGGGCGCCAGGCTCAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50468097 108 +  54856640 AACCTTCTGGGAAGAGTGCGACGCCGAGC-CCCAGCGGGAGTGGTTGGAGGCTGCCGGGGGCGCTGAGCCGGAGA--GGGCCCGCTTGGGCAGTG-CGGGCGCCAGGCTCAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       611740 108 -   2910086 AACCTTCTGGGAAGAGTGCGACGCCGAGC-CCCAGCGGGAGTGGTTGGAGGCTGCCGGCTGCGCTGAGTCGGAGA--GGGCCCGGTTGGGCAGTG-CGGGCGCCGGGCTCAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40634260 108 +  42888418 AACCTTCTGGGAAGAGTGCGACGCTGAGC-CCCAGCGGGAGTGGTTGGAGGCTGCCGGCTGCGCTGAGCCGGAGA--GGGCCCGGTTGGGCAGTG-CGGGCGCCAGGCTCAA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             627241 103 -  36342412 GACCTCCTGGGAAGGGTGAAGCGCCGGAG-ACCCGCGGCGACGG-----GCTCACAAGCTGGGCCAAGCCCGGGA--GAGACCGGCCGGGCAGCGGCGGGCGCCGGG-TCAA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81345046  35 + 145441459 --CCTCCCGCGGAGGG-----------GC-CGCGGCGCGCACGACTTCA---------------------------------------------------------------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54402997  64 +  91889043 AGCC------------------------C-TCCGACGGCAgcgg------------ggcagggccgagcgcgggc--cgggccggccgga---------gcgcggggcTCAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1792949  62 +   3943991 --ACCCCTGGGAAGGGAGCGGCCGCGGGC-TGGGCCCGGGTCGGGTGAGGAGCGCGG--------------------GGGCCAGG---------------------------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113264738  73 + 116334831 I
e proCoq1.NW_012142813v1         9651  87 +     80520 I

a score=12907.000000
s hg38.chr15_KI270850v1_alt    329386 1 +    430880 T
s panTro5.chr15              63482797 1 +  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80440183 1 +  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        40040 1 -   1709092 T
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17192542 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60880763 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108407468 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        17945 1 -   2311642 T
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        16090 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21096598 1 -  24206276 C
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        11795 1 -   1397330 T
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        35164 1 -   1784207 T
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22232145 1 + 158406734 T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50468205 1 +  54856640 T
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       611848 1 -   2910086 T
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40634368 1 +  42888418 T
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1         9738 1 +     80520 T
i proCoq1.NW_012142813v1    I 87 C 0
s otoGar3.GL873530             627344 1 -  36342412 T
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81345081 1 + 145441459 T
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54403061 1 +  91889043 C
i canFam3.chr3              C 0 C 0
e micMur3.chr9              113264738 73 + 116334831 I
e dasNov3.JH570731            1793011 0 +   3943991 C

a score=553431.000000
s hg38.chr15_KI270850v1_alt    329387 42 +    430880 GCGGAAGC-CGCCGGCCCGTTGC-GCTCCAGCCTGACAGGGCTC
s panTro5.chr15              63482798 42 +  83230942 GCGGAAGC-CGCCGGCCCGTTGC-GCTCCAGCCTGACAGGGCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80440184 42 +  99763055 GCGGAAGC-CGCCGGCCCGTTGC-GCTCCAGCCTGACAGGGCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        40041 42 -   1709092 GCGGAAGC-CGCCGGCCTGTTGC-GCTCCAGCCTGACAGGGCTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17192543 42 - 121039945 ACGGAAGC-CGCCGGCCCGTTGC-GCTCCAGCCTGATAGGGCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60880764 42 + 169600520 GCGGAAGC-TGCCTTCCCGCTGC-GCTCCAGCCTGACAGGGCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108407469 42 - 171882078 GCGGAAGC-TGCCTTCCCGCTGC-GCTCCAGCCTGACAGGGCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        17946 42 -   2311642 GCGGAAGC-TGCCTTCCCGCTGC-GCTCCAGCCTGACAGGGCTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        16091 42 -   1987038 ACGGAAGC-TGCCTTCCCGCTGC-GCTCCAGCCTGACAGGGCTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21096599 42 -  24206276 GCGGAAGC-TGCCTTCCCGCTGC-GCTCCAGCCTGACAGGGTGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        11796 42 -   1397330 GCGGAAGC-TGCCTTCCCGCTGC-GCTCCAGCCTGACAGGGCTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        35165 42 -   1784207 GCGGAAGC-TGCCTTCCCGCTGC-GCTCCAGCCTGACAGGGCTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22232146 42 + 158406734 GCGGAAGC-CGCCGGCCCGCTGC-GCTCCAGCCTGACAGGGCCC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50468206 42 +  54856640 GCGGAAGC-CGCCGGCCCGCTGC-GCTCCAGCCTGACAGGGTCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       611849 42 -   2910086 GCGGAAGC-CGCTGGCCCGCTGC-GCTCCAGCCTGACAGGGCCC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40634369 42 +  42888418 GCGGAAGC-CGCCGGCCCGCTGC-GCTCCAGCCTGACAGGGCCC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113264811 42 + 116334831 GCGGAGGC-CAGCGGCCTGCTGC-GCCCCAGCCTGACAGGGCTC
i micMur3.chr9              I 73 I 92
s proCoq1.NW_012142813v1         9739 42 +     80520 GCGGAAGC-CAGCAGCCCACTAC-GCTCCAGCCTGACAGGGCTC
i proCoq1.NW_012142813v1    C 0 I 90
s otoGar3.GL873530             627345 21 -  36342412 GAGGAAGC-CAGGGACTCGCTT----------------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81345082 31 + 145441459 GCGGAAGCGCGCCAGGCCGCCG----------GTGACGGCG---
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54403062 43 +  91889043 GCCGAGGC-CAGTGGCCCGCGGAGGCTTGGGCCTGACGGGGCCC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1793011 33 +   3943991 GCGGAAGC-CCGCG----------GCCCCAGCCAGAAAGGGCCC
i dasNov3.JH570731          C 0 C 0

a score=1035658.000000
s hg38.chr15_KI270850v1_alt    329429 88 +    430880 TGCGCCTTCCCGGCCCAGGGC--CTCTCTGTGGGCTGAG--GACCGCGGGAAGCTGCAGATGGGGGACGATTGTGGAGGATGGCGGCCTCGA
s panTro5.chr15              63482840 88 +  83230942 TGCGCCTTCCCGGCCCAGGGC--CTCTCTGTGGGCTGAG--GACCGCGGGAAGCTGCAGATGGGGGACGATTGTGGAGGATGGCGGCCTCGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80440226 88 +  99763055 TGCGCCTTCCCGGCCCAGGGC--CTCTCTGTGGGCTGAG--GACCGCGGGAAGCTGCAGATGGGGGACGATTGTGGAGGATGGCGGCCTCGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        40083 88 -   1709092 TGCGCCTTCCCGGCCCAGGGC--CTCTCTGTGGGCTGAG--GACCGCGGGAAGCTGCAGATGGGGGACGATTGTGGAGGATGGCGGCCTGGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17192585 90 - 121039945 CGCGCCTGCCCGGCCCAGGGCCTCTCTCTGTGGGCTGAG--GACCGCGGGAAGCTGCAGATGGGGGACGACTGTGGAGGATGGCGGCCTCGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60880806 90 + 169600520 CGCGCCCGCCCGGCCCAGGGCCTCTTTTTGTGGGCTGAA--GACCGCGGTAAGCTGCAGATGGAAGACGATTATGGAGGATGCCGGCCTCGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108407511 90 - 171882078 CGCGCCCGCCCGGCCCAGGGCCTCTTTTTGTGGGCTGAA--GACCGCGGTAAGCTGCAGATGGAAGACGATTATGGAGGATGCCGGCCTCGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        17988 90 -   2311642 CGCGCCCGCCCGGCCCAGGGCCTCTTTTTGTGGGCTGAA--GACCGCGGTAAGCTGCAGATGGAAGACGATTATGGAGGATGCCGGCCTCCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        16133 90 -   1987038 CGCGCCCGCCTGGCCCAGGGCCTCTTTTTGTGGGCTGAA--GACCGCGGTAAGCTGCAGATGGAAGACGATTATGGAGGATGCCGGCCTCGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21096641 90 -  24206276 CGCGCCCGCCCGGCCCAGGGCCTCTTTTCGTGGGCTGAA--GACCGCGGGAAGCTGCAGATGGAAGACGATTGTGGAGGATGCCGGCCTCGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        11838 90 -   1397330 CGCGCCCGCCCGGCCCAGGTCCTCTTTTTGTGGGCTGAA--GACCGCGGTAAGCTGCAGATGGAAGACGATTATGGAGGATGCCGGCCTCGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        35207 90 -   1784207 CGAGCCCGCCCGGCCCAGGGCCTCTTTTTGTGGGCTGAA--GACCGCGGGAAGCTGCAGATGGAAAAAGATTGTGGAGGATGGCAGCCTCGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22232188 90 + 158406734 CGCGCCCGCCCGGTCCAGAGCCTTTCTTTGTGGGCTGGG--GACCGCAGGAAACTGCAGATGGAGGACGATTGAAGAGGATGGCGGCCTCGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50468248 89 +  54856640 GGCGCCCGCCCGGCCCAGGGCCTCTTTTTGTGGGCT-GG--GACCGCGGGAAACTGCAGATGGAGGACGATTGAAGAGGATGGCGGCCTCGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       611891 90 -   2910086 CGCGCCCGCCCGGTCCAGGGCCTCTCTTTGTGGGCTGGA--GTCCACGGGAAACTCCAGATGGAGGACGATTGAAGAGGATGGCGGCCTCGG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40634411 90 +  42888418 CGCGCCTGCCCGGTCCAGGGCCTCTCTTTGTCGGCTGGG--GACCGCGGGAAACGGCAGATGGAGGACGATTGAAGAGGATGGCAGACTCGG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             627366 92 -  36342412 CGCACCCGCCCGGCCTTGGGTCTCCCCTCGAGGAATGGAGTGGCCACAGAAAGCAGCGGATGGAGTATGATTGAAGAGGATACAAGTCCTGG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81345113 74 + 145441459 ---------CCGGCCC-------CTCGCTGCGGACTTGA--GGCCGCGACGAGCGGAGGATGGGCGAGGATTGAAAAGGACAGAGCCCTGGG
i mm10.chr7                 C 0 I 1
s canFam3.chr3               54403105 74 +  91889043 TGCGCCC----------------TTCCTCGAGAGCTGGG--GGCCGCGGAAAGCAGCGGATGGACGACGATTGTAGGGGACGAGGGCCTCGG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1793044 88 +   3943991 CGCGCCCACCGGGCCCAGGGC-TCCCTCCGAAGACTGGG--GCCCACGGAAAGCGGAGGATGGAGGACGATTGTGG-GGATGGCGGCCTGGC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113264853 92 + 116334831 I
e proCoq1.NW_012142813v1         9781 90 +     80520 I

a score=3658.000000
s hg38.chr15_KI270850v1_alt    329517 2 +    430880 GC
s panTro5.chr15              63482928 2 +  83230942 GC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80440314 2 +  99763055 GC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        40171 2 -   1709092 GC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17192675 2 - 121039945 GC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60880896 2 + 169600520 CC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108407601 2 - 171882078 CC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        18078 2 -   2311642 CC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        16223 2 -   1987038 CC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21096731 2 -  24206276 CC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        11928 2 -   1397330 CC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        35297 2 -   1784207 CC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22232278 2 + 158406734 GA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50468337 2 +  54856640 GC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       611981 2 -   2910086 GC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40634501 2 +  42888418 GC
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1         9871 2 +     80520 GC
i proCoq1.NW_012142813v1    I 90 C 0
s otoGar3.GL873530             627458 2 -  36342412 GC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81345188 1 + 145441459 G-
i mm10.chr7                 I 1 C 0
s canFam3.chr3               54403179 2 +  91889043 GC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1793132 2 +   3943991 AC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113264853 92 + 116334831 I

a score=1645323.000000
s hg38.chr15_KI270850v1_alt    329519 102 +    430880 CAAAACACCTACCATGTTGGCGGGTCCTTGGTAAAAGAGGAAACAGGAAGCACAGGCGAAGCCTGTTAAAGCTTAGGCCAGAAAGCCGCTTCCGCCCGGCCA
s panTro5.chr15              63482930 102 +  83230942 CACAACACCTACCATGTTGGCGGGTCCCTGGTAAAAGAGGAAACAGGAAGCACAGGCGAAGCCTGTTAAAGCTTAGGCCAGAAAGCCGCTTCCGCCCGGCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80440316 102 +  99763055 CACAACACCTACCATGTTGGCGGGTTCCTGGTAAAAGAGGAAACAGGAAGCACAGGCGAAGTCTGTTAAAGCTTAGGCCAGAAAGCCGCTTCCGCCCGGCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        40173 102 -   1709092 CAAAACACCTACCATGTTGGCGGGTCCTTGGTAAAAGAGGAAACAGGAAGCACAGGCGAAGCCTGTTAAAGCTTAGGCCAGAAAGCCGCTTCCGCCCGGCCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17192677 102 - 121039945 CAAAACACCTACTATGTTGGCGGGTCCTTGGTAAAAGAGGAAACAAGAAACACAGGCGAGGCCTATAAAAGCTTAGGCCAGAAAGCCGCTTCCGCCCGGCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60880898 100 + 169600520 CAAAACACCTACCATCTTGGCGGGTCCTTGGT-AAAGAGGAAACAGGAAGCACAGGCGAGGCCTATTAAAGCTTAGGCCAGAAAGCCGCTTCCG-CCGGTAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108407603 100 - 171882078 CAAAACACCTACCATCTTGGCGGGTCCTTGGT-AAAGAGGAAACAGGAAGCACAGGCGAGGCCTATTAAAGCTTAGGCCAGAAAGCCGCTTCCG-CCGGTAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        18080 100 -   2311642 CAAAACACCTACCATGTTGGCGGGTCCTTGGT-AAAGAGGAAACAGGAAGCACAGGCGAGGCCTATTAAAGCTTAGGCCAGAAAGCCGCTTCCG-CCGGTAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        16225 100 -   1987038 CAAAACACCTACCATGTTGGCGGGTCCTTGGT-AAAGAGGAAACAGGAAGCACAGGCGAGGCCTATTAAAGCTTAGGCCAGAAAGCCGCTTCCG-CCGGTAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21096733 100 -  24206276 CAAAACACCTACCATGTTGGCGGGTCCTTGGT-AAAGAGGAAACAGGAAGCACAGGCGAGGCCTATTAAAGCTTAGGCCAGAAAGCCGCTTCCG-CCGGTAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        11930 100 -   1397330 CAAAACACCTACCATGTTGGCGGATCCTTGGT-AAAGAGGAAACAGGAAGCACAGGCGAGGCCTATTAAAGCTTAGGCCAGAAAGCCGCTTCCG-CCGGTAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        35299 101 -   1784207 CAAAACACCTACCATGTTGGCGGGTCCTTGGTAAAAGAGGAAACAGAAAGGACAGGCGAGGCCTATTAAAGCTTAGGCCAGAAAGCCGCTTCCG-CCGGTAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22232280 101 + 158406734 CAAAATACCTACCATGTTGGCGGGTCCTTAGTGAAAGAGGAAACCGGAACCACAAGCGAGGCCTATTAAAGCTTAGGCCAGAGAGCCGCTTCCGGCCGG-CC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50468339 102 +  54856640 CAAAACACCTACCATGTCGGCGGGTCCTCAGTGAAAGAGGAAACCGGAAGCACAAGCGAGGCCTATTTAAGCTTAGGCCAGAGAGCCGCTTCCGCCGGGCCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       611983 102 -   2910086 CAAAATACCTACCATGTTGGCGGGTCCTTAGCGAAAGAGGAAACCGGAAGCACAAGCGAGGCCTATTAAAGCTTAGGCCAGAGAGCCGCTTCCGCCCGGCCC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40634503 100 +  42888418 CAAAACACCTACCATGTTGGCGGGTCCTTAGTGAA--AGGAAACCGGAAGCACAAGCGAGGCCTATTAAAGCTTAGGCCAGAGAGCCGCTTCCGCCCGGCCC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113264945 100 + 116334831 CAAAACACCTACCATGTTGGCGGGTCCTCAGTAAAAGAGGAAACAGGAAGCACAAGAGAGGCCTAT-AAAGCGCA-GCCAGAAAGTCGCTTCCGCCCAGCCA
i micMur3.chr9              I 92 I 679
s proCoq1.NW_012142813v1         9873 101 +     80520 CAAAACACCTACCATCTCGGCGGGTCCTCAGTAAAAGAGGAAACAGGAAGCACAAGAAAGGCCTAT-AAAGCGCAGGCCAGAAAGTCGCTTCCGCCCAGCCA
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             627460 101 -  36342412 CATAACACCTACCATGTTGGCGGGTCCTCGGCAAAAGAGGAAACAGGAAGTACAAAAGAGACCTTT-AAAGCGCAGGCCAGAGAGCCGCTTCCGCTCAGATA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81345189  98 + 145441459 CCAAACACCTACCATGTTGGCGGGT-CTCGGTAAAAGAGGAAACAGGAAACACAAGAGAGGCCTAT-AAAGCGC-GGCCAGAAAGCCGCTTCCGCCTGGCT-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54403181  99 +  91889043 CAAGATACCTACCATGTTGGCGGGT--ATAGTAAAAGAGGAAACAGGAAGCACAAGCGAGGCCTAT-AAAGCGCGGGCCAGAAAGGCGCTTCCGCCGAACCC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1793134 101 +   3943991 AAAAACACCTACCATGTCGGCGGGTCTCTGGTAAAAGAGGAAACAGGAAGCACAAGTGAGACCTAT-AAAGCGCAGGCCAGAAAGCCGCTTCCGCCTAGCCT
i dasNov3.JH570731          C 0 C 0

a score=722735.000000
s hg38.chr15_KI270850v1_alt    329621 55 +    430880 CGGTCGCTCTGAGCCTACTCGGGAGCCACACAGCGCCCCCTG-----GCGGAGTGGAGCG
s panTro5.chr15              63483032 55 +  83230942 CGGTCGCTCTGAGCCTACTCGGGAGCCACACAGCGCCCCCTg-----gcggagtggagcg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80440418 55 +  99763055 CGGTCGCTCTGAGCCTACTCGGGAGCCACACAGCGCCCCCTg-----gcggagtggagcg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        40275 55 -   1709092 CGGTCGCTCTGAGCCTACTCGGGAGCCACACAGCGCCCCCTG-----GCGGAGTGGAGCG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17192779 55 - 121039945 CGGGCGCGCTGAGCCTACTCGGAAGCCACACAGCGCCCCCTG-----GCGGAATGGAGCG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60880998 55 + 169600520 CGGGCGCGCTGAGCCTACTAGGGAGCCACACAGCGCCCCCTG-----GCGGAGTGGGGCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108407703 55 - 171882078 CGGGGGAGCTGAGCCTACTAGGGAGCCACACAGCGCCCCCTG-----GCGGAGTGGGGCG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        18180 55 -   2311642 CGGGCGCGCTGAGCCTACTAGGGAGCCACACAGCGCCCCCTG-----GCGGAGTGGGGCG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        16325 55 -   1987038 CGGGCTTGCTGAGCCTACTAGGGAGCCACACAGCGCCCCCTG-----GCGGAGTGGGGCG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21096833 55 -  24206276 CGGGCGCGCTGAGCCTACTAGGGAGCCACACAGCGCCCCCTG-----GCGGAGTGGGGCG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        12030 55 -   1397330 CCGGCTTGCTGAGCCTACTAGGGAGCCACACAGCGCCCCCTG-----GCGGAGTGGGGCG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        35400 55 -   1784207 CGGGCGCGCTGAGCCTACCCGGGAGCCACACAGCGCCCCCTG-----GCGGAGTGGGGCG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22232381 55 + 158406734 CGGGGGAGCCGAACCTACGTGGGAGCCACACAgcggcccctg-----gcggagcggggcg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50468441 59 +  54856640 CGGGCGAGCTGAACCTACTTGGGAGCC-CACAGCGGCCCCTGGCGGAGCGGAGCGGAGCG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       612085 55 -   2910086 CGGGCGAGCTGAACCTACTTGGGAGCCACACAGCGGCCCCTG-----GCGGAGCGGGCCG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40634603 55 +  42888418 CGGGCGAGCTGAAGCTACTTGGGAGCCGCACAgcggcccctg-----gcggagcggggcg
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1         9974 55 +     80520 GGGACGCGCGGGGCTCGCTTGAGAGTCCCACAGCGGCCCCTG-----GCGGAGCGGAGCG
i proCoq1.NW_012142813v1    C 0 I 589
s otoGar3.GL873530             627561 51 -  36342412 GGGACGC---GGGCTAAC-GGAGCGCCTCACGGCGGCCCCTG-----GCGGCGTGGAGCG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81345287 38 + 145441459 -----------------CGCGAGAGTCCCACAGCGGCCCCTA-----GCGGAGTGGAGTG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54403280 55 +  91889043 GGGACACGCAGAGCCGGCTCCGGAGCTCCACAGCGACCCCCG-----GCGGCGCGGGGCG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1793235 54 +   3943991 GGGCCGCGCTGAGCCGGCGCGAGCGCC-CACAgcggcccctg-----gcggcgcggggtg
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113265045 679 + 116334831 I

a score=862352.000000
s hg38.chr15_KI270850v1_alt    329676 105 +    430880 GGGGCGGCGG-----------TGGC-GCGCCC-TCCGGTGGGCAGGGTG----TCTGT-CCCGCCCCCGACGGCTCCTC-----------------------CCTTTCCGCTCCCCGCTCCC--CTCGG------TTGACTTGGGCTCGCTTCT
s panTro5.chr15              63483087 104 +  83230942 ggg-cggcgg-----------cggc-gcgCCCCTCCGGTGGGC-CGGTG----TCTGT-CCCGCCCCCGACGGCTCCTC-----------------------CCTTTCCGCTCCCCGCTCTC--CTCGG------TTGACTTGGGCTCGCTTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80440473 104 +  99763055 ggg-cggcgg-----------cggc-gcgCCCCTCCGGTGGGC-CGGTG----TCTGT-CCCGCCCCCGACGGCTCCTC-----------------------CCTTTCCGCTCCCCGCTCTC--CTCGG------TGGACTTGGGCTCGCTTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        40330 106 -   1709092 GGGGCGGCGG-----------CGGC-GCGCCCCTCCGGTGGGCAGGGTG----TCTGT-CCCGCCCCCGACGGCTCCTC-----------------------CCTTTCCGCTCCCCGCTCCC--CTTGG------TTGACTTGGGCTCGCTTCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17192834 106 - 121039945 GGAGCGGCGG-----------TGGC-GCGCCCCTCCGGCGGGCAGGGTG----TCTGT-CCCGCCCCCGACGGCTCCTC-----------------------CCTTTCCGCTCCCCGCTCCC--CTCGG------TTGACTTGGGCTCGCTTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60881053 105 + 169600520 GAAGCGGCGG-----------CGGC-GCGCCCCTCCGGTGGGCGGGGTG------TGT-CCCGCCCCCGACGGCCCCTC-----------------------CCTTTCCGCTCCCCGCTCCC-TCTTGG------TTGACTTGGGCTAGCTTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108407758 105 - 171882078 GAAGCGGCGG-----------CGGC-GCGCCCCTCCGGTGGGCGGGGTG------TGT-CCCGCCCCCGACGGCCCCTC-----------------------CCTTTCCGCTCCCCGCTCCC-TCTTGG------TTGACTTGGGCTAGCTTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        18235 105 -   2311642 GAAGCGGCGG-----------CGGC-GCGCCCCTCCGGTGGGCGGGGTG------TGT-CCCGCCCCCGACGGCCCCTC-----------------------CCTTTCCGCTCCCCGCTCCC-TCTTGG------TTGACTTGGGCTAGCTTCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        16380 105 -   1987038 GGAACGGCGG-----------CGGC-GCGCCCCTCCGGTGGGCGGGGTG------TGT-CCCGCCCCCGACGGCCCCTC-----------------------CCTTTCCGCTCCCCGCTCGC-TCTCGG------TTGACTTGGGCTAGCTTCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21096888 105 -  24206276 GGAGCGGCGG-----------CGGC-GCGCCCCTCCGGTGGGCGGGGTG------TGT-CCCGCCCCCGACGGCCCCTC-----------------------CCTTTCCGCTCCCCGCTCCC-CCTTGG------TTGACTTGGGCCAGCTTCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        12085 105 -   1397330 GGAACGGCGG-----------CGGC-GCGCCCCTCCGGTGGGCGGGGTG------TGT-CCCGCCCCCGACGGCCCCTC-----------------------CCTTTCCGCTCCCCGCTCCC-TCTTGG------TTGACTTGGGCTAGCCTCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        35455 105 -   1784207 GGAGCGGCGG-----------CGGC-GCGCCCCTCCGGTGGGCGGGGTG------TGT-CCCGCCCCCGACGGCCCCTC-----------------------CCTTTCCGCTCCACGCTCCC-CCTCGG------TTGACTTGGGCTCGCTTCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22232436 105 + 158406734 ggagcggcgg-----------cggc-gcgcccccACGGAGGGAGGGTTA----TCTGT-CCCGCCCTCGACGGCTCCTC-----------------------CCTTTCCGCTCCCCGCCCCC-GCTTGG------TTGACTT--GTTCGCTTCT
i calJac3.chr6              C 0 I 313
s saiBol1.JH378108           50468500 105 +  54856640 GGAGCGGCGG-----------CGGC-GCGCCCCTCCGGAGGGCGGGTTA----TCTGT-CCCGCCCCCGACGGCTCCTC-----------------------CCTTTCCGCTCCTCGCCCCC-GCTTGG------TTGACCT--GTTCGTTTCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       612140 105 -   2910086 GGAGCGGCGG-----------CGGC-GCGCCCCTCCGGAGGGCGGGTTA----TCTGT-CCCGCCCCCGACGGCTCCTC-----------------------CCTTTCCGCTTCCCGCCCCC-GCTTGG------TTGACCT--GTTCGCTTCT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40634658 105 +  42888418 ggagcggcgg-----------cggc-gcgCCCCTCCGGAGGGCGGGTTA----TCTGT-CCCGCCCCCGACGGCTCCTC-----------------------CCTTTCCGCTCCCCGCCCCC-ACTTGG------TTGACCT--GTTCGCTTCT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             627612  65 -  36342412 GAAGTGGAGGCAGGTGAATGTCAGC-CTGCCCCTGTGGCTGGA-------------------GCCCCACGCGG------------------------------------GCTGCCTGCGCC---------------------------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81345325  94 + 145441459 -------AGG-----------CTGC-CTGGCT-----GTGGGCGGGGCGAAAGTCTGCGCGTGCGCACGCCGGCAGCTC---------------------GGCCGTCTTGGTTTCCACTCCA--AATAG------TT-------CCGTGCTTCT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54403335 139 +  91889043 GAAGTGCAGG-----------AGGCTGCCACCACCTGGTgggcggggcgagggcctgg-cccgccccgccccgccccTCTCCCCCATGGGCGTGGctcccgcccctcccgcccctcccgccTCTCTTAGGGTTCATCAGCCCGCGGTTGCT---
i canFam3.chr3              C 0 I 4
s dasNov3.JH570731            1793289  58 +   3943991 gggctgcggg-----------cggc-gagccc---------------------------cgcgcccTCGGGGCTTCCTC-----------------------GC---CCGGTCGCTGCGCCC--C-----------------------------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113265045 679 + 116334831 I
e proCoq1.NW_012142813v1        10029 589 +     80520 I

a score=1984949.000000
s hg38.chr15_KI270850v1_alt    329781 203 +    430880 CTCCCCCATCTGATTTTTA--ATGGGACCGCCCGTGCGATGTGCTCTAGC---GTAG----CGTCCATCTCTTCCACACACGCC-AGGGAGAGGA---GAAGCATCCGGTCCTCGGGAGGACCGAGAA---AAGAAGGCGATCCAGGGCCGTGGAACAATGAGGAAGTGGGGGATGGC-------------GGCCGCCCAGGTCCCCCACTCAGTCCGCGGGCCGGAGACTT
s panTro5.chr15              63483191 203 +  83230942 CTCCCCCATCTGATTTTTA--ATGGGACCGCCTGTGCCATGTGCTCTAGC---GTAG----CGTCCATCTCTTCCACACACGCC-AGGGAGAGGA---GAAGCGTCCGGTCCTCGGGAGGACCGAGAA---AGGAAGGCGATCCAGGGCCGTGGAACAATGAGGAAGTGGGGGATGGC-------------GGCCGCCCAGGTCCCCCACTCAGTCCGCGGGCCGGAGACTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80440577 203 +  99763055 CTCCCCCATCTGATTTTTA--ATGGGACCGCCTGTGCCATGTGCTCTAGC---GTAG----CGTCCATCTCTTCCACACACGCC-AGGGAGAGGA---GAAGCGTCCGGTCCTCGGGAGGACCGAGAA---ACGAAGGCGATCCAGGGCCGTGGAACAATGAGGAAGTGGGGGATGGC-------------GGCCGCCCAGGTCCCCCACTCAGTCCGCGGGCCGGAGACTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        40436 203 -   1709092 CTCCCCCATCTGATTTTTA--ATGGGACCGCCCGTGCGATGGGCTCTAGC---GTAG----CGTCCATCTCTTCCACACACGCC-AGGGAGAGGA---GAAGCATCCGGTCCTCGGGAGGACCGAGAA---AGGAAGGCGATCCAGGGCCGTGGAACAATGAGGAAGTGGGGGATGGC-------------GGCCGCCCAGGTCCCCCACTCAGTCCGCGGGCCGGAGACTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17192940 207 - 121039945 CTCCCCCATCTGATTTTTA--ATGGGACCGCCCGTGTGATGTGCTCTAGC---GTAGGAGCCGTCCATCTCTTCCACACACGCC-AGGGAGCGGA---GAAGCATCCAGTCCTCGGGAGGACCGAGAA---AGGAAGGCGATCCAGGGCCGTGGAACAATGAGGAAGTGGGGGATGGC-------------CGCCACCCAGGTCCCCTACTCAGTCCGCGGGCCGGAGATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60881158 204 + 169600520 CTCCCTCATCTGATTTTTA--ATGGGACCGCCCGTGTGCTGTGCTCTAGC---GTAGGAGCGGTCCATCTCTTCCATACACGTC-AGGGAGAGGA---GAGGCATCCGATCCTCGGGAGGACCGAGAA---AGGAAGGCGATCCAGGGCCGCGGAACAAT---GAAGTGCGGGATGAC-------------GGCCGCCCAGGGTCCCCACCCACTCCGCTGGCCAGAGACTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108407863 204 - 171882078 CTCCCTCATCTGATTTTTA--ATGGGACCACCCGTGTGCTGTGCTCTAGC---GTAGGAGCGGTCCATCTCTTCCATACACGTC-AGGGAGAGGA---GAGGCATCCGATCCTCGGGAGGACCGAGAA---AGGAAGGCGATCCAGGGCCGCGGAACAAT---GAAGTGCGGGATGAC-------------GGCCGCCCAGGGTCCCCACCCACTCCGCTGGCCAGAGACTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        18340 204 -   2311642 CTCCCTCATCTGATTTTTA--ATGGGACCGCCCGTGTGCTGTGCTCTAGC---GTAGGAGCGGTCCATCTCTTCCATACACGTC-AGGGAGAGGA---GAGGCATCCGATCCTCGGGAGGACCGAGAA---AGGAAGGCGATCCAGGGCCGCGGAACAAT---GAAGTGCGGGATGAC-------------GGCCGCCCAGGGTCCCCACCCACTCCGCTGGCCAGAGACTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        16485 203 -   1987038 CTCCCTCATCTGATTTTTA--ATGGGACCGCCC-TTTGCTGTGCTCTAGC---GTAGGAGCGGTCCATCTCTTCCACACACGTC-AGGGAGAGGA---GAGGCATCCGGTCCTCGGGAGGACCGAGAA---AGGAAGGCGATCCAGGGCCGCGGAACAAT---GAAGTGCGGGATGAC-------------GGCCGCCCAGGGTCCCTACCCACTCCGCTGGCCAGAGACTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21096993 207 -  24206276 CTCCCTCATCTGATTTTTA--ATGGGACCGCCCGTGTGCTGTGCTCTAGC---GTAGGAGCGGTCCATCTCTTCCACACACGCC-AGGGAGAGGA---GAGGCATCCGGTCCTCGGGAGGACCGAGAA---AGGAAGGCGATCCAGGGCCGCGGAACAATGAAGAAGTGCGGGATGAC-------------GGCCGCCCAGGGTCCCCACCTACCCCGCTGGCCAGAGACTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        12190 217 -   1397330 CTCCCGCATCTGATTTTTA--ATGGGACCGCCCGTGTGCTGTGCTCTAGC---GTAGGAGCGGTCCATCTCTTCCACACACGTC-AGGGAGAGGA---GAGGCATCCGGTCCTCGGGAGGACCGAGAA---AGGAAGGCGATCCAGGGCCGCGGAACAAT---GAAGTGCGGGATGACGGCCGCCCAGGGTGGCCGCCCAGGGTCCCCACCCACTCCGCTGGCCAGAGACTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        35560 207 -   1784207 CTCCCTCATCTGATTTTTA--ATGGGACCGCCCGTGTGCTGTGCTCTAGC---GTAGGAGCGGTCCATCTCTTCCACACACGCC-AGGGAGAGGA---GAGGCATCCGGTCCTCGGGAGGACCGAGAA---AGGAAGGCGATCCAGGGCCGCGGAACAATGAGGAAGTGCGGGATGAC-------------GGCCGCCCAGGGTCCCCACCCACTCCGCTGGCCAGAGACTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22232854 206 + 158406734 CTGCCCCATCTGATTTCTA--ATCGGACCGCCCGTGTGATGTGCTCTATT---CGAGGAGCGGTCCATCTCTTCCACACATGCT-AGGGAGAGGA---GAGGCATCCGGTCCTCGGGATGACCAAGAA---AGGAAGGCGATCCAGGGCCGTGGAACAATGAGGAAGTCCGGGATAAC-------------GGCCACCCAGA-CCCCCAGCCAGTGCGCGGGCCAAAGACTT
i calJac3.chr6              I 313 C 0
s saiBol1.JH378108           50468605 206 +  54856640 CTCCCCCATCTGATTTCTA--ATCGTACGGCCTGTGTGATGTGCTTTATC---CGAGGAGCGGTCCATCTCTTCCACACATGCC-AGGGAGAGGA---GAGGCATCCGGTCCTCGGGAGGACCGAGAA---AGGAAGGCGATCCAGGGTCGTGGAACAATGAGGAAGTCAGGGATGGC-------------GGCCACCCAGA-CCTCCAGCCAGTCCCCAGGCCAAAGACTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       612245 202 -   2910086 ----CTCCCCTGATTTCTA--ATCGGACCGCCCGTGTGATGTGCTCTATC---CGAGGAGCGGTCCATTTCTTCCACACATGCC-AGGGAGAGGA---GAGGCATCCGGTCCTCGGGAGGATCGAGAA---AGGAAGGCGATCCAGGGTCGTGGAACAATGAGGAAGTCAGGGATGGC-------------GGCCACCCAGA-CCCCCAGCCAGTCCGCGGGCCAAAGACTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40634763 206 +  42888418 CTCCCCCATCTGATTTCTA--ATCGGACCGCCTGTGTGATGTGCTCTATC---CTAGGAGCGGTCCATCTCTTCCACACATGCC-AGGGAGAGGA---GAGGCATCCGGTCCTCGGGAGGACCGAGAA---ACGAAGGCGATCCAGGGCCGTGGAACAATGAGGAAGTCAGGGATGGC-------------GGCCACCCAGA-CCCCCAGCCAGTCCGCGGGCCAAAGACtt
i aotNan1.NW_018505940v1    C 0 I 5039
s otoGar3.GL873530             627677 187 -  36342412 --------TCCAGCCTATG--ACCGGGCCGCGGGTTTGAT-CGCTTGGGC---CTAAGAGGGGTGCATCTTTTCCACGCACGCT-AGGGAGAGAAGGCGAGGCTCCAGGTCCTAAGTAAAACTTAGAA---TGGGAGGCGACCTGGGGCCGTGGCAAAGCCA-GGAGTCAGGGATGGC-------------A-------------CCCACGCAGTCCGTGGGTCAGAGACTT
i otoGar3.GL873530          C 0 I 9
s mm10.chr7                  81345419 143 + 145441459 ---------CT-----------TGGG------CGTCCGGTGTGTTTTAAT---CTAGGAGT-----------------TACTTT-GAGGTCCTGA---GATGGA----GCCTAAAGGAGGCCCGAGCT---ATGAAA---------------GGCATAGTAGTAAACAGGGTCATCCC-------------CGATTTCCA----CCCTACCCGCGCCTCTAGTCAGAGATTA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54403478 156 +  91889043 CTCCCT----TGATTCTCAAGACAGGATCG----TTTGATGTGCCCTGGA---CTAGAAGGGGTGCATGTCTTCTGCACACGCC-CGCGAGACGG---------------------------------------AGGGCGATTCGGGAGCGTGGGAAGGTGAGGAGGTAGGGGAGGTG-------------CCCCGCCCAAGACCC------------TGGGCCTCAAGCTT
i canFam3.chr3              I 4 I 10
s dasNov3.JH570731            1793347 169 +   3943991 -------------------------GAATTCC-------TGTGCTCTAACCTACTAGGAGGGGTGCACCTGTAACGCACACTCCGGGGGAGGGGA---GGGGGA---------AGGGAGCTTCGAGGCCTTGGGAAGGCCATCTGG----CTAGTGCGAAGGGGAGGAAGGAGATGGC-------------GCCCGACTCAGGGAGCCACC--GTCCATGGGTCAGAGATTT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113265045 679 + 116334831 I
e proCoq1.NW_012142813v1        10029 589 +     80520 I

a score=19631.000000
s hg38.chr15_KI270850v1_alt    329984 11 +    430880 ----------GTCAGGTAGAG
s panTro5.chr15              63483394 11 +  83230942 ----------GTCAGGTAGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80440780 11 +  99763055 ----------GTCAGGTAGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        40639 11 -   1709092 ----------GTCAGGTAGAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17193147  6 - 121039945 ----------GTC-----GAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60881362 11 + 169600520 ----------GGCAGGTAGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108408067 11 - 171882078 ----------GGCAGGTAGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        18544 11 -   2311642 ----------GGCAGGTAGAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        16688 11 -   1987038 ----------GGCAGGTAGAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21097200 11 -  24206276 ----------GGCAGGTAGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        12407 11 -   1397330 ----------GGCAGGTAGAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        35767 11 -   1784207 ----------GGCAGGTAGAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22233060  5 + 158406734 ----------------TAAGG
i calJac3.chr6              C 0 I 12
s saiBol1.JH378108           50468811  6 +  54856640 ---------------CTAAGA
i saiBol1.JH378108          C 0 I 12
s cebCap1.NW_016107610v1       612447  6 -   2910086 ---------------GTAAGC
i cebCap1.NW_016107610v1    C 0 I 12
s otoGar3.GL873530             627873 11 -  36342412 ----------ATCTGGCGGAG
i otoGar3.GL873530          I 9 C 0
s mm10.chr7                  81345562  6 + 145441459 ---------------GTAGGG
i mm10.chr7                 C 0 I 5
s canFam3.chr3               54403644  9 +  91889043 ----------GCCTGGGGG--
i canFam3.chr3              I 10 C 0
s dasNov3.JH570731            1793516 21 +   3943991 GTCCCCCCTCTCCTGGCGGAG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113265045 679 + 116334831 I
e proCoq1.NW_012142813v1        10029 589 +     80520 I
e aotNan1.NW_018505940v1     40634969 5039 +  42888418 I

a score=926299.000000
s hg38.chr15_KI270850v1_alt    329995 81 +    430880 -ACAGGGTGCGACTGGGCGAGACGTATctcatttcttccgggcctttgctcaaatgtcgccttatcagagg-gctttcccttc
s panTro5.chr15              63483405 81 +  83230942 -ACAGGGTGCGACTGGGCGAGACGTATctcatttcttccgggcctttgctcaaatgtcgccttatcagagg-gctttcccttc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80440791 81 +  99763055 -ACAGGGTGCGACTGGGCGAGACGTATctcatttcttccgggcctttgctcaaatgtcgccttatcagagg-gctttcccttc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        40650 81 -   1709092 -ACAGGGTGCGACTGGGCGAGACGTATctcatttcttccgggcctttgctcaaatgtcgccttatcagagg-gctttcccttc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17193153 81 - 121039945 -ACAGGGTGCGACTGGGCGAGACATATctcatttcttccgggcctttgctcaaatgtcgccttatcagagg-gctttcccttc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60881373 81 + 169600520 -ACAGGGTGCGACTGGGAGAGACATATctcatttcttccgggcctttgctcaaatgtttccttatcagagg-gctttcccttc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108408078 81 - 171882078 -ACAGGGTGCGACTGGGAGAGACATATctcatttcttccgggcctttgctcaaatgtttccttatcagagg-gctttcccttc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        18555 81 -   2311642 -ACAGGGTGCGACTGGGAGAGACATATctcatttcttccgggcctttgctcaaatgtttccttatcagagg-gctttcccttc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        16699 81 -   1987038 -ACAGGGTGCGACTGGGAGAGACATATctcatttcttccgggcctttgctcaaatgtttccttatcagagg-gctttcccttc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21097211 81 -  24206276 -ACAGGGTGCGACTGAGAGAGACATATctcatttcttccgggcctttgctcaaatgtttccttatcagagg-gctttcccttc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        12418 81 -   1397330 -ACAGGGTGCGACTGGGAGAGACATATctcatttcttccgggcctttgctcaaatgtttccttatcagagg-gctttcccttc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        35778 81 -   1784207 -ACAGGGTGCGACTGGGAGAGACATAcctcatttcttctgggcctttgctcaaatgtttccttatcagagg-gctttcccttc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22233077 78 + 158406734 -ACAGGGTGTGCCTGGGAGAGGCATATctcat---ttctgggtctttgctcaaatgtcgccttatcagagg-actttcccttc
i calJac3.chr6              I 12 C 0
s saiBol1.JH378108           50468829 78 +  54856640 -ACACGGTGCGCCTGGAAGAGGCATATctcat---ttccaggtctttgctcaaatgtcgccttatcagagg-actttcccttc
i saiBol1.JH378108          I 12 C 0
s cebCap1.NW_016107610v1       612465 78 -   2910086 -ATAGGGTGCGCCCGGGGGAGGCATATctcat---ttccgggtctttgctcaaatgtcgccttatcagagg-actttcccttc
i cebCap1.NW_016107610v1    I 12 C 0
s aotNan1.NW_018505940v1     40640008 78 +  42888418 -ACAGGGTGCGCCTGGGAGAGGCATATctcat---ttccgggtctttgctcaaatgtcgccttatcagagg-actttcccttc
i aotNan1.NW_018505940v1    I 5039 C 0
s otoGar3.GL873530             627884 67 -  36342412 -ACACGGTGGGTGTCAGAGAGGTTTATTTCGTTTCTCCT--GTCTTTGCCCAAACGTCGCCGTAACAGAG-------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81345573 67 + 145441459 --------CCTAATTGGTGAGGTTCCTCTCAT---TTCCTGGTGTCACAGCAAACATCACCT----AGAGT-GGCTTTTCTTC
i mm10.chr7                 I 5 C 0
s canFam3.chr3               54403653 80 +  91889043 -AGAGGGGGCCACTGAGAGAAGCTGATCTCGTTTCTGCCAAGACT--GCTCAAGTATCACCTCATCAGAGGTGCTCTTTCTTC
i canFam3.chr3              C 0 I 232
s dasNov3.JH570731            1793537 77 +   3943991 ACCCAAGTGTGACTGGGAGAGCTGTatctcactt-----gagtctttgttcaaaggtcaccttatgagagg-ggctttcgttc
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113265045 679 + 116334831 I
e proCoq1.NW_012142813v1        10029 589 +     80520 I

a score=677358.000000
s hg38.chr15_KI270850v1_alt    330076 72 +    430880 aaacttaggtaaa--------ataactccctcactatccc----tg--cttatatttcctagcacttgccgtgtgattcggcttat
s panTro5.chr15              63483486 72 +  83230942 aaacttaggtaaa--------ataactccctcactatccc----tg--cttatatttcctagcacttgccgtgtgattcggcttat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80440872 72 +  99763055 aaacttaggtaaa--------ataactccctcactatccc----tg--cttatatttcctagcacttgccgtgtgattcggcttat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        40731 72 -   1709092 aaacttaggtaaa--------ataactccctcactatccc----tg--cttatatttcctagcacttgccgtgtgattcggcttat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17193234 72 - 121039945 aaacttaggtaaa--------ataactccctcactatccc----tg--cttatatttcctagcacttgccgtgtgattcggcttat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60881454 72 + 169600520 agacttaggtaaa--------ataactccctcactatccc----tg--cttatatttcctagcacttgccgtgtgactcggcttat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108408159 72 - 171882078 agacttaggtaaa--------ataactccctcactatccc----tg--cttatatttcctagcacttgccgtgtgactcggcttat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        18636 72 -   2311642 agacttaggtaaa--------ataactccctcactatccc----tg--cttatatttcctagcacttgccatgtgactcggcttat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        16780 72 -   1987038 agacttaggtaaa--------ataactccctcactatccc----tg--cttatgtttcctagcacttgccgtgtgactcggcttat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21097292 72 -  24206276 agacttaggtaaa--------ataactccctcactatccc----tg--cttatatttcctaccacttgccgtgtgactcggcttat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        12499 72 -   1397330 agacttaggtaaa--------ataactccctcactatccc----tg--cttatgtttcctagcacttgccgtgtgactcggcttat
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        35859 72 -   1784207 agacttaggtaaa--------ataactccctcactatccc----tg--cttatatttcctagcacttgccgtgtgactcggcttat
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22233155 71 + 158406734 aaacttaggt-----------ataactccctcactattcc----tgctcttgtatttctcagcacttggcatttgactcggcttag
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50468907 74 +  54856640 aaacttagttatc--------ataactccctcactattcc----cgctcttgtatttcctagcacttggcatgtgactcggcttag
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       612543 74 -   2910086 aaacttaggtata--------acaactccctcactattcc----tgctcttgtatttcctagcacttggcacgtgactcggcttag
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40640086 74 +  42888418 aaacttaggtata--------ataactccctcactattcc----tgctcttctatttcctagcacttggcatgtgactcggcttag
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             627951 66 -  36342412 AAGCTCAGCT--------------GCTGTCCCTTTAATGC----TC--CTAACGGTGACCAGCGAATGTCAAGCGGCGTGCTGTGG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81345640 55 + 145441459 TCATCCCAGCACA--------GTA----TTCCATTCGAGC----TGCTCTTAAATGTCTGAGCAC---------------AATTAC
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1793614 84 +   3943991 caacttatataaaatagcaccatagctccatcactttccctttatg--caaatattgtgtaatactagtcacgggacttaaattta
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113265045 679 + 116334831 I
e proCoq1.NW_012142813v1        10029 589 +     80520 I
e canFam3.chr3               54403733 232 +  91889043 I

a score=1329726.000000
s hg38.chr15_KI270850v1_alt    330148 125 +    430880 ttttctcaactaggggtgagctccatgacagtaatggtca--tt-----ttgtttagctaattcccagtgcttgaa-cagcgcctagcacgtaa-caAC--CTCTAACATTG--------ACGTGA-------AG--GGCCCAGCTCACCAGC
s panTro5.chr15              63483558 125 +  83230942 ttttctcaactaggggtgagctccatgacagtaatggtca--tt-----ttgtttagctaattcccagtgcttgaa-cagcgcctagcacgtaa-caAC--CTCTAACATTG--------ACGTGA-------AG--GGCCCAGCTCACCAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80440944 125 +  99763055 ttttctcaactaggggtgagctccatgacagtaatggtca--tt-----ttgtttagctaattcccagtgcttgaa-cagcgcctagcacgtaa-caAC--CTCTAACATTG--------ACGTGA-------AG--GGCCCAGCTCACCAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        40803 125 -   1709092 ttttctcaactaggggtgagctccatgacagtaatggtca--tt-----ttgtttagctaattcccagtgcttgaa-cagcgcctagcacgtaa-caAC--CTCTAACATTG--------ACGTGA-------AG--GGCCCAGCTCACCAGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17193306 128 - 121039945 gtttctcaactaggggtgagctccatgacagtaatggtca--tt-----ttgtttagctaattcccagtgcttgaa-cagcgcctagcacgtaAGCAACCTCTCTAACATTG--------ACATGA-------AG--GGCCCAACTCACCAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60881526 127 + 169600520 ttttctcaactaggggtgagctccatgacagtaatggtca--tt-----ttgtttagctaattcccactgcttgaa-cagcgcctagcacacag-caacctctccaataTTG--------ACATGA-------AG--GGCCCAAATCACCTGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108408231 127 - 171882078 ttttctcaactaggggtgagctccatgacagtaatggtca--tt-----ttgtttagctaattcccactgcttgaa-cagcgcctagcacacag-caacctctccaataTTG--------ACATGA-------AG--GGCCCAAATCACCTGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        18708 127 -   2311642 ttttctcaactaggggtgagctccatgacagtaatggtca--tt-----ttgtttagctaattcccactgcttgaa-cagcgcctagcacacag-caacctctccaataTTG--------ACATGA-------AG--GGCCCAAATCACCTGC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        16852 127 -   1987038 ttttctcaactaggggtgagctccatgacagtaatggtca--tt-----ttgtttagctaattcccactgcttgaa-cagcgcctagcacacag-caacctctccaataTTG--------ACGTGA-------AG--GGCCCAAATCACCTGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21097364 127 -  24206276 ttttctcaactaggggtgagctccatgacagtaatggtca--tt-----ttgtttagctaattcccactgcttgaa-cagcgcctagcacacag-caacctctccaataTTG--------ACGTGA-------AA--GGCCCAACTCACCTGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        12571 127 -   1397330 ttttctcaactaggggtgagctccatgacagtaatggtca--tt-----ttgtttagctaattcccactgcttgaa-cagcgcctagcacacag-caacctctccaataTTG--------ACATGA-------AG--GGCCCAAATCACCTGC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        35931 127 -   1784207 ttttctcaactaggggtgagctccatgacagtaatggtca--tt-----ttgtttagctaattcctactgcttgaa-cagcgcctagcacatag-gaacctctccaataTTG--------ACGTGA-------AG--GGCCCAGCTCACCTGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22233226 127 + 158406734 ttttctcatctagaggtgagcaccatgacagtaagggtcg--tt-----ttgtttagccaattcccagtgcttgaa-tagcacctagcatggag-caatctctccaataTTG--------AAATGA-------AG--GGCCCAAGTCACCTGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50468981 127 +  54856640 ttttctaatctaggggtgagctccatgacagtaagggtcg--tc-----ttgtttagccaattcccagtgcttgaa-tagcgcctagcaggtag-caatctctccaataTTG--------AAATGA-------AG--GGCCCAAGTCACCTGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       612617 126 -   2910086 ttttctcatctaggggt-atctccatgacagtaagggtct--tt-----ttgtttagccaattcccagtgcttgaa-tagcgcctagcacgtag-caatctctccaataTTG--------AAATGA-------AG--GGCCCAAGTCACCTGC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40640160 127 +  42888418 ttttctcatataggggtgagcgccatcacagtaagggtca--tt-----tcgtttagccaattcccagtgcttgaa-tagcgcctagcatgtag-caatctctccaataTTG--------AAATGA-------AG--GGCCCTAGTCACCTGC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             628017 120 -  36342412 CTTTC-----TAGGGCTGAGCTCCTCGGCAATGGAGACTG--TT-----TTGTTTAGCTAATTTCCGGTGCTCA----GGCCACTGGCACACAA-CAGGC-TTCAAACACTT--------GAGTGA-------AGAAGGGCCGGTTCACTTGC
i otoGar3.GL873530          C 0 I 390
s mm10.chr7                  81345695 119 + 145441459 TTTTCTCAGCTAGGTTTGAGCTA---AACAGGAAGG--------------------GCTAACCTCGAGTGCTTAAATCAGTGGCTGGCTCACAG-AGAGGTCTCAAACACTTTTACCAACAAATTA-------GG--ATCTCAGTTAACTAG-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54403965 120 +  91889043 TTTCTTCACCTAGGGGTGAGCTCCCCCACAGTGAGGGCCGTTTT-----TTGCTTTGCT-ATTCCCAGTT-----A-CCACCCCCA-CCCTCAG-CAAGTTCTCAAAGGTAG--------AAGCTG-------AG--G--CCTGACCACCTGC
i canFam3.chr3              I 232 C 0
s dasNov3.JH570731            1793698 128 +   3943991 cagactaagttggtactgagttctaggagactaagggttt--tttgttgttgtttagctaatccc------------cagtgcctagggcacag-caagcacgcagatattt--------aggtgactgaatgaG--GGCTCAGCTTACCCTT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113265045 679 + 116334831 I
e proCoq1.NW_012142813v1        10029 589 +     80520 I

a score=233124.000000
s hg38.chr15_KI270850v1_alt    330273 22 +    430880 AGAGCTCCCAA-CACCTCAGGTA
s panTro5.chr15              63483683 22 +  83230942 AGAGCTCCCAA-CACCTCAGGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80441069 22 +  99763055 AGAGCTCCCAA-CACCTCAGGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        40928 22 -   1709092 AGAGCTCCCAA-CACCTCAGGCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17193434 22 - 121039945 AGAGCTCCCAA-CACCTCAGGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60881653 22 + 169600520 AGAACTCCCAG-CACCTCAGACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108408358 22 - 171882078 AGAACTCCCAG-CACCTCAGGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        18835 22 -   2311642 AGAACTCCCAG-CACCTCAGGCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        16979 22 -   1987038 AGAACTCCCAG-CACCTCAGGCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21097491 22 -  24206276 AGAACTCCCAA-CACCTCAGACA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        12698 22 -   1397330 AGAACTCCCAG-CACCTCAGGCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        36058 22 -   1784207 AGGACTCCCAA-CACCTCAGGCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22233353 22 + 158406734 AGAGCTCTCAA-CACTTCAGGCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50469108 22 +  54856640 AGAGCTCTCAA-CACTTCAGGCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       612743 22 -   2910086 AGAGCTCTCAA-CACTTCAGGCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40640287 22 +  42888418 AGAGCTCTCAA-CACTTCAGGCA
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81345814 23 + 145441459 ACTGTTCCCGATTAGTAGGGACA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54404085 22 +  91889043 AGCACTCTCAA-CCACTGAGGCA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1793826 22 +   3943991 AAGGCTCCCAA-CGAGTGTGCTT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113265045 679 + 116334831 I
e proCoq1.NW_012142813v1        10029 589 +     80520 I
e otoGar3.GL873530             628137 390 -  36342412 I

a score=605231.000000
s hg38.chr15_KI270850v1_alt    330295 46 +    430880 CCTTCT-CCATCCACTA---TCTTCAGGCTGTTCCTGCCGCACCCATCCT
s panTro5.chr15              63483705 46 +  83230942 CCTTCT-CCATCCACTA---TCTTCAGGCTGTTCCTGCCACACCCATCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80441091 46 +  99763055 CCTTCT-CCATCCACTA---TCTTCAGGCTGTTCCTGCCACACCCATCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        40950 47 -   1709092 CCTTCTCCCATCCACTA---TCTTCAGGCTGTTCCTACCACACCCATCCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17193456 46 - 121039945 CCTTCT-CCATCCACTA---CCTTCAAGCTGTTCCTGCCATACCCATCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60881675 46 + 169600520 CCCTCT-CCAACCACCA---TCTTCAGGCTGTTCCTGCCATACCCATCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108408380 46 - 171882078 CCCTCT-CCAACCACCA---TCTTCAGGCTGTTCCTGCCATACCCATCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        18857 46 -   2311642 CCCTCT-CCAACCACCA---TCTTCAGGCTGTTCCTGCCATACCCATCCC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        17001 46 -   1987038 CCCTCT-CCAACCACCA---TCTTCAGGCTGTTCCTGCCATACCCATCCC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21097513 46 -  24206276 CCTTCT-CCAACCACCA---TCTTCAGGCTGTTCCTGCCATACCCATCCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        12720 46 -   1397330 CCCTCT-CCAACCACCA---TCTTCAGGCTGTTCCTGCCATACCCATCCC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        36080 46 -   1784207 CCTTCT-CCATCCACCA---TCTTCAGACTGTTCCTGCCATACCCATCCC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22233375 46 + 158406734 CCTTCT-CCACCCACCG---TCTTCAGGTTGTTTCTGCCATACCCATCCC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50469130 46 +  54856640 CCTTCT-CCACCCACCG---TCTTCAGGCTGTTCCTGCCATACCCATCCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       612765 46 -   2910086 CCTTCT-CCACCCACCG---TCTTCAGGCTGTTCCTGCCATACCCATCCC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40640309 46 +  42888418 CCTTCT-CCACCCACCG---TCTTCAGGCTGTTCCTGCGATACCCATAAC
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        10618 46 +     80520 CCTTCT-CCATCCACCA---TCTCCAGGCTGTTCCTACCATACCCAAGCC
i proCoq1.NW_012142813v1    I 589 C 0
s mm10.chr7                  81345837 48 + 145441459 CTATCT-CCAACCTTCAGCTTCTTCCGGTTGTT-CTGCCATAACCAAGCC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54404107 49 +  91889043 CCTCCA-CCAACCACCAGGGTCCTCAGGCTCTTCCTGCTATACCCACGCC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1793848 46 +   3943991 TCTTCA-CCTACAACTA---TCTCCGTGAGATTCCTGCCATAGCCATCCC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113265045 679 + 116334831 I
e otoGar3.GL873530             628137 390 -  36342412 I

a score=529690.000000
s hg38.chr15_KI270850v1_alt    330341 40 +    430880 CAAACCAGGGCCTTCCGAAG-CCACCAGCGCAGGCTGCCCC
s panTro5.chr15              63483751 40 +  83230942 CAAACCAGGGCCTTCCGAAG-CCACCAGCGCAGGCTGCCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80441137 40 +  99763055 CAAACCAGGGCCTTCCGAAG-CCACCAGCGCAGGCTGCCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        40997 40 -   1709092 CAAACCAGGGCCTTCCGAAG-CCACCAGCGCAGACTGCCCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17193502 40 - 121039945 CAAACCAGGGCCTTCCGAAG-CCACCAGCGCAGGCTGCCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60881721 40 + 169600520 CAAACCAGGGCCTTCCGAAG-CCACCAGCTCAGGCTGCCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108408426 40 - 171882078 CAAACCAGGGCCTTCCGAAG-CCACCAGCTCAGGCTGCCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        18903 40 -   2311642 CAAACCAGGGCCTTCCGAAG-CCACCAGCTCAGGCTGCCCC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        17047 40 -   1987038 CAAACAAGGGCCTTCCGAAG-CCACCAGCTCAGGCTGCCCC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21097559 40 -  24206276 CAAACCAGGGCCTTCCGAAG-CCACCAGCTCAGGCTGCCCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        12766 40 -   1397330 CAAACCAGGGCCTTCCGAAG-CCACCAGCTCAGGCTGCCCC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        36126 33 -   1784207 CAAACCAGGGCCTTCTGAAG-CTACCAACTCAGG-------
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22233421 40 + 158406734 CAAACCAGGGTCTTCAGAAG-CTTCCAGTGCAAGCTGCCCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50469176 40 +  54856640 CAAACCAGGGCCTTCGGAAG-CCACCAGCGCAAGCTGCCCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       612811 40 -   2910086 CAAACCAGGGCCTTCGGAAG-CCGCCAGCGCAAGCTGCCCT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40640355 40 +  42888418 CAAACCAGGGCCTTCAGAAG-CCACCAGCGCAAGCTGCCCT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113265724 40 + 116334831 CAAACCAGGCCCTACTGAAG-CCGCCAGTGCAGGCTGCCCC
i micMur3.chr9              I 679 I 36
s proCoq1.NW_012142813v1        10664 40 +     80520 CAAACCAGGCCCTTCTGAAG-CCACCAGTGCAAGCTGCCCC
i proCoq1.NW_012142813v1    C 0 I 35
s mm10.chr7                  81345885 38 + 145441459 CAAAGCAGGCTCTTACGCTA-CGACC--CAGTGGCTTCATC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54404156 41 +  91889043 CCAACCAGGCCTTTCTGGAGCCCACTGGAGCAGACCACCCC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1793894 37 +   3943991 CAAATAAGGCCCTTCTGAAA-CCACC--TGGTGGCTTCAT-
i dasNov3.JH570731          C 0 C 0
e otoGar3.GL873530             628137 390 -  36342412 I

a score=392355.000000
s hg38.chr15_KI270850v1_alt    330381 42 +    430880 GATGGGCCGCAGCCTAGGTAGGGCCCTGCCCCCTTCTTCCAA
s panTro5.chr15              63483791 42 +  83230942 GATGGGCCGCAGCCTAGGTAGGGCCCTGCCCCCTTCTTCCAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80441177 42 +  99763055 GATGGGCCGCAGCCTAGGTAGGGCCCTGCCCCCTTCTTCCAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        41037 42 -   1709092 GATGGGCCGCAGCCTAGGTAGGGCCCTGCCCCCTTCTTCCAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17193542 42 - 121039945 GATGGGCCGCAGCCTAGGTAGGGCCCTGCTCCCTTCTTCCAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60881761 41 + 169600520 GATGGGCCGCAGCCTAGGTAGGGCCCTGC-CCCTTCTTCCAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108408466 41 - 171882078 GATGGGCCGCAGCCTAGGTAGGGCCCTGC-CCCTTCTTCCAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        18943 41 -   2311642 GATGGGCCGCAGCCTAGGTAGGGCCCTGC-CCCTTCTTCCAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        17087 41 -   1987038 GATGGGCCGCAGCCTAGGTAGGGCCCTGC-CCCTTCTTCCAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21097599 41 -  24206276 GATGGGCCGCAGCCTAGGTAGGGTCCTGC-CCCTTCTTCCAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        12806 41 -   1397330 GATGGGCCGCAGCCTAGGTAGGGCCCTGC-CCCTTCTTCCAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        36159 16 -   1784207 -------------------------CTGC-CCCTTCTTCCAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22233461 42 + 158406734 GATGAGTGGCAGCCTAGGTAGGGCCCTGCCAGCTTCTTCCAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50469216 42 +  54856640 GATGAATCGCAGCCTAGTTAGGGCCCTGCCCCCTTCTTCCAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       612851 42 -   2910086 GATGAATCGCAGCCTAGGTAGGGCCCTGCCCCCTTCTTCCAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40640395 42 +  42888418 CATGAGTCGCAGCCTAGGTAGGGCCCTGCCCCCTTCTTCCAA
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81345923 25 + 145441459 ----------TGTCCAGAGAGGG-------CCTTTCCTCCAG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54404197 12 +  91889043 ------------------------------CTTGTCCTCCAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1793931 33 +   3943991 ---------CAGCCTAGCCAGAGCCATGCCCACTTCTTCCAA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113265764 36 + 116334831 I
e proCoq1.NW_012142813v1        10704 35 +     80520 I
e otoGar3.GL873530             628137 390 -  36342412 I

a score=463415.000000
s hg38.chr15_KI270850v1_alt    330423 43 +    430880 CTCTGCTCCCTGGGCTGACAGCAATCCTAGGCTCC-CACCTGAC
s panTro5.chr15              63483833 43 +  83230942 CTCTGCTCCCTGGGCTGACAGCAATCCTAGGCTCC-CACCTGAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80441219 43 +  99763055 CTCTGCTCCCTGGGCTGACAGCAATCCTAGGCTCC-CACCTGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        41079 43 -   1709092 CTCTGCTCCCTGGGCTGACAGCAGTCCTAGGCTCC-CACCTGAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17193584 43 - 121039945 CTCTGCTCCCTGGGCTGACAGCAGTCCTAGGCTCC-CACCTGAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60881802 43 + 169600520 CTCTGCTCCCTGGGCTGACAGCGGTCCTAGGCCCC-TACCTGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108408507 43 - 171882078 CTCTGCTCCCTGGGCTGACAGCAGTCCTAGGCCCC-TACCTGAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        18984 43 -   2311642 CTCTGCTCCCTGGGCTGACAGCAGTCCTAGGCCCC-TACCTGAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        17128 43 -   1987038 CTCTGCTCCCTGGGCTGACAGCAGTCCTAGGCCCC-TACCTGAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21097640 43 -  24206276 CTCTGCTCCCTGGGCTGACAGCAGTCCTAGGCCCC-TACCTGAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        12847 43 -   1397330 CTCTGCTCCCTGGGCTGACAGCAGTCCTAGGCCCC-TACCTGAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        36175 43 -   1784207 CTCTGCTCCCTGGGCTGACAGCAGTCCTAGGCCCC-TACCTGAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22233503 37 + 158406734 CCTTGCTCCCTGGGCTGA-------CCTAGGCCCCACACCTGAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50469258 36 +  54856640 CTCTGCTCCCTGGGCTGA-------CCTAGGCCCCACACCTCA-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       612893 37 -   2910086 CTCTGCTCCCTGGGCTGA-------CCTAGGCCCCACACCTGAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40640437 37 +  42888418 CTCTGCTCCCTGGGCTGA-------CCTAGGTCCCACACCTGAC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113265800 43 + 116334831 CTCTGCTCCCTGGGCTGACGGGAGTCCTAGGCACC-CGCCTGAC
i micMur3.chr9              I 36 I 340
s proCoq1.NW_012142813v1        10739 42 +     80520 CTCTGCTCCTTGGGCTGACGGGAGTCCTAGGC-CC-CACCTGAC
i proCoq1.NW_012142813v1    I 35 C 0
s mm10.chr7                  81345948 36 + 145441459 --CTCTTTCCTGGGACAG----GGTCCTGCGCTCA-AACCTAA-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54404209 34 +  91889043 CTCTG----CTGAACCAA-----GTCCCAAGCCCC-CACCAGAC
i canFam3.chr3              C 0 I 2
s dasNov3.JH570731            1793964 15 +   3943991 CTCTGGTTCCTGGGT-----------------------------
i dasNov3.JH570731          C 0 C 0
e otoGar3.GL873530             628137 390 -  36342412 I

a score=765590.000000
s hg38.chr15_KI270850v1_alt    330466 63 +    430880 A-GGGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTA-------AGCCC-AGGGCTGTGCCTCATTCCTC-AAC
s panTro5.chr15              63483876 63 +  83230942 A-GGGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTA-------AACCC-AGGGCTGTGCCTCATTCCTC-AAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80441262 63 +  99763055 A-GGGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTA-------AACCC-AGGGCTGTGCCTCATTCCTC-AAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        41122 64 -   1709092 A-GGGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTA-------AGCCC-AGGGCTGTGCCTCATTCCTCAAAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17193627 64 - 121039945 ---GGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTAAG----CAGCCC-AGGGCTGTGCCTCATTCCTC-GAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60881845 67 + 169600520 A-GGGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTAAG----CAGCCCAAGGGCTGTGCCTCATTCCTC-AAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108408550 66 - 171882078 A-GGGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTAAG----CAGCCC-AGGGCTGTGCCTCATTCCTC-AAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        19027 66 -   2311642 A-GGGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTAAG----CAGCCC-AGGGCTGTGCCTCATTCCTC-AAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        17171 66 -   1987038 A-GGGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTAAG----CAGCCC-AGGGCTGTGCCTCATTCCTC-AAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21097683 66 -  24206276 A-GGGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTAAG----CAGCCC-AGGGCTGTGCCTCATTCCTC-AAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        12890 66 -   1397330 A-GGGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTAAG----CAGCCC-AGGGCTGTGCCTCATTCCTC-AAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        36218 67 -   1784207 AGGGGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTAAG----CAGCCC-AAAGCTGTGCCTCATTCCTC-AAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22233540 64 + 158406734 ---GGGAAGGCTGAGCTGGCCAGGCTGGATGAGTTAAG----CAGCCC-AGGGCTGTGCCTCATTCCTC-AGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50469294 59 +  54856640 ------AAGGCT--GCTGGCCAGGCTGGATGAGTTAAG----CAGCCC-AGGGCTGTGCCTCATTCCTC-AAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       612930 64 -   2910086 A-GGGGAAGGCT--GCTGGCCAGGCTGGATGAGTTAAG----CCGCCC-AGGGCTGTGCCTCATTCCGC-AAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40640474 66 +  42888418 A-GGGGAAGGCTGAGCTGGCCAGGATGGATAAATTAAT----CTTCCC-AGCGCTGTGCCTCATTCCTC-AAC
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        10781 68 +     80520 ---TTAAAGTCTGGGCTGGCCAGGCTGGACGAGTTAAGAACTCTGCCC-AGGGCTGTGCCTCGTCCCTC-AAC
i proCoq1.NW_012142813v1    C 0 I 287
s mm10.chr7                  81345984 61 + 145441459 -----GGAGACCGTGCTGGCCACAGGGCATGTATCAAG-----GGGCC-AAGGCTGTGCTTCATCCTTC-AAC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54404245 65 +  91889043 -AAGGAAAGCCTGGGCTGGCCA-GTTGCAGGCAGTAAG----TGGCAT-GGGGCTGGGCCTCACCCCTC-CAG
i canFam3.chr3              I 2 I 11
s dasNov3.JH570731            1793979 62 +   3943991 -----GAAGGCTGAACTGGCCAGGCTGGATATGTTATG----GGGCCC-AGTGCCATGCTGCACCCCTC-AAC
i dasNov3.JH570731          C 0 I 3
e micMur3.chr9              113265843 340 + 116334831 I
e otoGar3.GL873530             628137 390 -  36342412 I

a score=1017345.000000
s hg38.chr15_KI270850v1_alt    330529 108 +    430880 GCA-----CCTTGGGTACTCCAGTCGG--------------------A--CTCTCAA-----CTGATTGGGGATGGAAACCTGAAGGACAGGAAACCCTGGCAGCAAAAAG----TACCAATGGGACAAAAGA---------AAAGGCCAGA-A
s panTro5.chr15              63483939 108 +  83230942 GCA-----CCTTGGGTACTCCAGTCGG--------------------A--CTCTCAA-----CTGATTGGGGATGGAAACCTGAAGGACAGGAAACCCTGGCAGCAAAAAG----TAGCAATGGGACAAAAGA---------AAAGGCCAGA-A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80441325 108 +  99763055 GCA-----CCTTGGGTACTCCAGTCGG--------------------A--CTCTCAA-----CTGATTGGGGATGGAAACCTGAAGGACAGGAAACCCTGGCAGCAAAAAG----TAGCAATGGGACAAAAGA---------AAAGGCCAGA-A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        41186 106 -   1709092 GCA-----CCTTGGGTACTCCAGTCGG--------------------A--CTCTCAA-----CTGATT-GGGATGGAAACCTGAAGGACAGGAAACCCTGGCAGC-AAAAG----TAGCAATGGGACAAAAGA---------AAAGGCCAGA-A
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17193691 107 - 121039945 GCA-----CCTTGGGTACTCCAGTCGG--------------------A--CTCTCAA-----CTGATTGGGGATGGAAACCTGAAGGACAGAAAACCCTGGCAGC-AAAAG----TAGCAATGGGACAAAAGA---------AAAGGCCAGT-A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60881912 103 + 169600520 GCA-----CCTTAGGTACTCCAGTCGG--------------------A--CTCTCGA-----CTG----GGGATGGAAACCTGAAGGGCAGGAAACCCTGGCACC-AAAAG----TGGCACTGGGACAAAATA---------AAAGGCCAGA-A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108408616 103 - 171882078 GCA-----CCTTAGGTACTCCAGTCGG--------------------A--CTCTCGA-----CTG----GGGATGGAAACCTGAAGGGCAGGAAACCCTGGCACC-AAAAG----TAGCACTGGGACAAAATA---------AAAGGCCAGA-A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        19093 103 -   2311642 GCA-----CCTTAGGTACTCCAGTCGG--------------------A--CTCTCGA-----CTA----GGGATGGAAACCTGAAGGGCAGGAAACCCTGGCACC-AAAAG----TAGCACTGGGACAAAATA---------AAAGGCCAGA-A
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        17237 103 -   1987038 GCA-----CCTTAGGTACTCCAGTCGG--------------------A--CTCTCGA-----CTG----GGGATGGAAAGCTGAAGGACAGGAAACCCTGGCACC-AAAAG----TAGCACTGGGACAAAATA---------AAAGGCCAGA-A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21097749 103 -  24206276 GCA-----CCTTAGGTACTCCAGTCGG--------------------A--CTCTCGA-----CTG----GGGATGGAAACCTAAAGGACAGGAAACCCTGGCACC-AAAAG----TAGCACTGGGACAAAATA---------AAAGGCCAGA-A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        12956 103 -   1397330 GCA-----CCTTAGGTACTCCAGTCGG--------------------A--CTCTCGA-----CTG----GGGATGGAAAGCTGAAGGACAGGAAACCCTGGCACC-AAAAG----TAGCACTGGGACAAAATA---------AAAGGCCAGA-A
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        36285 103 -   1784207 GCA-----CCTTGGGTACTCCAATCGG--------------------A--CTCTCGA-----TTG----GGGATGGAAACCTGAAGGACAGGAAACCGTGGCACC-AAAAG----TAGCACTGGGACAAAATA---------AAAGGCCAGA-A
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22233604 106 + 158406734 GCA-----CCTTGGGTACTCCAGTCAG--------------------A--CTCTCAA-----CTGATTGAGGATGG-AACCTGAAGAACAGGAAACCCTCACCCC-AAAAG----TAACACTGGGACAAAATA---------AAAGGCCAGA-A
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50469353 106 +  54856640 GCA-----CCTTGGATACTCCAGTCAG--------------------A--CTCTCAA-----CTGATTGAGGATGG-AACCTGAAGAACAGGAAGCCCTCACCCC-AAAAG----TAGCACTGGGACAAAAGA---------AAAGGCCAGA-A
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       612994 105 -   2910086 GCA-----CCTTGGGTACT-CAGTCAG--------------------A--CTCTCAA-----CTGATTGAGGATGG-AACCTGAAGAACAGGAAGCCCTCACCCC-AAAGG----TAGCACTGGGGCAAAAGA---------AAAGGCCAGA-A
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40640540 106 +  42888418 GCA-----CCTTGGGTACTCCAGTCAG--------------------A--CTCTCAA-----CTGATTGAGGATGG-AACCTGAAGAACAGAAAGCCCTCACCCC-AAAAG----TAGCACTGGGACAAAAGA---------AAAGGCCAGA-A
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81346045 129 + 145441459 TCA-----TCTACGTCACTCTGGTTAGGTGAAGAGCTGAAAGTCCTTA--CTCTAAAAGTAGCTCATGGCGGGAGGAAAAAAGATGTCCTTGA--CCATGGACCC-GGAAG-----AATACTGAAGAGACCAA---------AGGGTCTGTA-A
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54404321 121 +  91889043 TCA-----CCTTGGCCAGTGCAGTCAG--------------------A--CCTTAAA-----CTGGCTGGGGACGGAAGACCAGAGGACAGGAAGTTCTCTACCT-GAAAGTGAGTGGCACCTGGACGAGATGGGGTGGAGCGAAGGAGAGAGG
i canFam3.chr3              I 11 C 0
s dasNov3.JH570731            1794044  99 +   3943991 GCAGTGACCCTTGGCCAGCCTAGCCAG--------------------ATTCTTTCAA-----GTGATTGGGGATGGAAGGCTGAAGGACAGGAA------------AGAAG----TA----TGGGACAAGAGA---------CACGGACAGA-A
i dasNov3.JH570731          I 3 I 124
e micMur3.chr9              113265843 340 + 116334831 I
e proCoq1.NW_012142813v1        10849 287 +     80520 I
e otoGar3.GL873530             628137 390 -  36342412 I

a score=649123.000000
s hg38.chr15_KI270850v1_alt    330637 58 +    430880 TCTC--AGAAC------------TGCGG----------G-------------AGCAAACTTCCAGTCAAGCTGCTGTCAGGCC--CGAAGTGAAAGA
s panTro5.chr15              63484047 58 +  83230942 TCTC--AGAAC------------TGCGG----------G-------------AGCAAACTTCCAGTCAAGCTGCTGTCAGGCC--CGAAGTGAAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80441433 58 +  99763055 TCTC--AGAAC------------TGCGG----------G-------------AGCAAACTTCCAGTCAAGCTGCTGTCAGGCC--CGAAGTGAAAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        41292 58 -   1709092 TCTC--AGAAC------------TGCAG----------G-------------AGCAAACTTCCAGTCAAGCTGCTGTCAGGCC--CGAAGTGAAAGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17193798 58 - 121039945 TCTC--AGAAT------------TGCGG----------G-------------AGCAAACTTCCAATCAAGCTGCTGTCAGGCC--CGAAGTGAAAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60882015 58 + 169600520 TCTC--AGAAT------------TGCGG----------G-------------AGCAAACTTCCAATCAAGCTGCTGTCAGGCC--CGAAGTGAAAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108408719 58 - 171882078 TCTC--AGAAT------------TGCGG----------G-------------AGCAAACTTCCAATCAAGCTGCTGTCAGGCC--CGAAGTGAAAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        19196 58 -   2311642 TCTC--AGAAT------------TGCGG----------G-------------AGCAAACTTCCAATCAAGCTGCTGTCAGGCC--CGAAGTGAAAGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        17340 58 -   1987038 TCTC--AGAAT------------TGCGG----------G-------------AGCAAACTTCCAATCAAGCTGCTGTCAGGCC--CGAAGTGAAAGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21097852 58 -  24206276 TCTC--AGAAT------------TGCGG----------G-------------AGCAAACTTCCAATCAAGCTGCTGTCAGGCC--CGAAGTGAAAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        13059 58 -   1397330 TCTC--AGAAT------------TGCGG----------G-------------AGCAAACTTCCAATCAAGCTGCTGTCAGGCC--CGAAGTGAAAGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        36388 58 -   1784207 TCTC--AGAAT------------TGCGG----------G-------------AGCAAACTTCCAATCAAGCTGCTGTCAGGCC--CAAAGTGAAAGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22233710 58 + 158406734 TCTC--AGAAT------------TGCAG----------G-------------AGCAAACTTCCATTCAAGCTGCAGTCAAGCC--TGAAGTGAAAGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50469459 58 +  54856640 TCTC--AGAAC------------TGCAG----------G-------------AGCAAACTTCCAGTCAAGCTGCTATCAGGCC--CAAAGTGAAAGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       613099 58 -   2910086 TCTC--AGAAT------------TGCAG----------G-------------AGCAAACTTCCAGTCAAGCTGCTGTCAGGCC--CGAAGTGAAAGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40640646 58 +  42888418 TCTC--AGAAT------------TGCAG----------G-------------AGCAAACCTCCAGTCAAGCTGCTGTCAGGTC--CAAAGTGAAAGA
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81346174 70 + 145441459 TCCCTGGGGGT------------TGCATCGTACATTACC-------------AGTGAATTCCCAATGAAGTGGAGGCCAGGCT--CCAGATGCAAGA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54404442 85 +  91889043 CCTC--TGTATGGACGCCTCCCCTGAGG----------GAGCTTCCTTCACCAGCATGCTTCCCGTCAAGCTGCTGCCAGCCAGGCTGAGTGAAGGA
i canFam3.chr3              C 0 I 4
e micMur3.chr9              113265843 340 + 116334831 I
e proCoq1.NW_012142813v1        10849 287 +     80520 I
e dasNov3.JH570731            1794143 124 +   3943991 I
e otoGar3.GL873530             628137 390 -  36342412 I

a score=55119.000000
s hg38.chr15_KI270850v1_alt    330695 11 +    430880 TCAGGgttt----------tt
s panTro5.chr15              63484105 11 +  83230942 TCAGGGttt----------tt
i panTro5.chr15             C 0 I 3
s panPan2.chr15              80441491 11 +  99763055 TCAGGGttt----------tt
i panPan2.chr15             C 0 I 3
s gorGor5.CYUI01015556v1        41350  5 -   1709092 TCAGG----------------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17193856 11 - 121039945 TCAGGCttt----------tt
i nomLeu3.chr6              C 0 I 3
s rheMac8.chr7               60882073 11 + 169600520 TCAGGGttt----------tt
i rheMac8.chr7              C 0 I 3
s macFas5.chr7              108408777 11 - 171882078 TCAGGGttt----------tt
i macFas5.chr7              C 0 I 3
s macNem1.NW_012011945v1        19254 11 -   2311642 TCAGGGGtt----------tt
i macNem1.NW_012011945v1    C 0 I 3
s cerAty1.NW_012002657v1        17398 11 -   1987038 TCAGGGttt----------tt
i cerAty1.NW_012002657v1    C 0 I 3
s chlSab2.chr29              21097910 21 -  24206276 TCAGGGttttttttgtttgtt
i chlSab2.chr29             C 0 I 3
s manLeu1.NW_012106908v1        13117 12 -   1397330 TCAGGGtttt---------tt
i manLeu1.NW_012106908v1    C 0 I 3
s colAng1.NW_012117110v1        36446  9 -   1784207 TCAGGGttt------------
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22233768 11 + 158406734 TCAGGCttt----------tt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50469517 11 +  54856640 TCAGGCttt----------tt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       613157 11 -   2910086 TCAGGCttt----------tt
i cebCap1.NW_016107610v1    C 0 I 21
s aotNan1.NW_018505940v1     40640704 10 +  42888418 TCAGGCttt----------t-
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81346244 11 + 145441459 CTAGACCTT----------AC
i mm10.chr7                 C 0 C 0
e micMur3.chr9              113265843 340 + 116334831 I
e proCoq1.NW_012142813v1        10849 287 +     80520 I
e dasNov3.JH570731            1794143 124 +   3943991 I
e canFam3.chr3               54404527  4 +  91889043 I
e otoGar3.GL873530             628137 390 -  36342412 I

a score=109188.000000
s hg38.chr15_KI270850v1_alt    330706 28 +    430880 -gttttt-----------gtttttgtttttgagacggagt
s panTro5.chr15              63484119 28 +  83230942 -gttttt-----------gtttttgtttttgagacggagt
i panTro5.chr15             I 3 C 0
s panPan2.chr15              80441505 28 +  99763055 -gttttt-----------gtttttgtttttgagacggagt
i panPan2.chr15             I 3 C 0
s gorGor5.CYUI01015556v1        41355 26 -   1709092 ---tttt-----------gtttttgtttttgagacggagt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17193870 26 - 121039945 ---tttt-----------ttttttttttttgagacggagt
i nomLeu3.chr6              I 3 C 0
s rheMac8.chr7               60882087 28 + 169600520 -tttttt-----------ttttttttttttgagatgtagt
i rheMac8.chr7              I 3 C 0
s macFas5.chr7              108408791 28 - 171882078 -tttttt-----------ttttttttttttgagacgtagt
i macFas5.chr7              I 3 C 0
s macNem1.NW_012011945v1        19268 28 -   2311642 -tttttc-----------ttttttttttttgagacgtagt
i macNem1.NW_012011945v1    I 3 C 0
s cerAty1.NW_012002657v1        17412 28 -   1987038 -tttttc-----------tttttttgttttgagacgtagt
i cerAty1.NW_012002657v1    I 3 C 0
s chlSab2.chr29              21097934 28 -  24206276 -ttgttt-----------ttttttttttttgagacgtagt
i chlSab2.chr29             I 3 C 0
s manLeu1.NW_012106908v1        13132 28 -   1397330 -tttttt-----------ttttttttttttgagacgtagt
i manLeu1.NW_012106908v1    I 3 C 0
s colAng1.NW_012117110v1        36455 16 -   1784207 ------------------------tgttttgagacgtagt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22233779 22 + 158406734 ------------------tttttttgtattgagacggagt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50469528 15 +  54856640 ------------------c-------tggtgagatggggt
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40640714 24 +  42888418 -----tt-----------tttttttctggtgagatggggt
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81346255 40 + 145441459 AGTCTTGCAGGAAGAGAACTCTTGGATTCTGAGGAGTAGT
i mm10.chr7                 C 0 I 298
e micMur3.chr9              113265843 340 + 116334831 I
e proCoq1.NW_012142813v1        10849 287 +     80520 I
e dasNov3.JH570731            1794143 124 +   3943991 I
e canFam3.chr3               54404527  4 +  91889043 I
e cebCap1.NW_016107610v1       613168 21 -   2910086 I
e otoGar3.GL873530             628137 390 -  36342412 I

a score=25318.000000
s hg38.chr15_KI270850v1_alt    330734 4 +    430880 cttg
s panTro5.chr15              63484147 4 +  83230942 cttg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80441533 4 +  99763055 cttg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        41381 4 -   1709092 cttg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17193896 4 - 121039945 cttg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60882115 4 + 169600520 cttc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108408819 4 - 171882078 cttc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        19296 4 -   2311642 cttc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        17440 4 -   1987038 cttc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21097962 4 -  24206276 cttg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        13160 4 -   1397330 cttc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        36471 4 -   1784207 cttg
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22233801 4 + 158406734 ttcg
i calJac3.chr6              C 0 I 2
s saiBol1.JH378108           50469543 4 +  54856640 cttg
i saiBol1.JH378108          C 0 I 2
s aotNan1.NW_018505940v1     40640738 4 +  42888418 cttg
i aotNan1.NW_018505940v1    C 0 I 2
e micMur3.chr9              113265843 340 + 116334831 I
e proCoq1.NW_012142813v1        10849 287 +     80520 I
e mm10.chr7                  81346295 298 + 145441459 I
e dasNov3.JH570731            1794143 124 +   3943991 I
e canFam3.chr3               54404527 4 +  91889043 I
e cebCap1.NW_016107610v1       613168 21 -   2910086 I
e otoGar3.GL873530             628137 390 -  36342412 I

a score=1175632.000000
s hg38.chr15_KI270850v1_alt    330738 132 +    430880 ctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctctgcctcccaagttcaagcgattctcctgcctcagcctcccaagtagctgggattacagg------------cgtgcgcc---------accacgccctgcta
s panTro5.chr15              63484151 132 +  83230942 ctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctctgcctcccaagttcaagcgattctcctgcctcagcctcccaagtagctgggattacagg------------cgtgcgcc---------accacgcccggcta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80441537 132 +  99763055 ctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctctgcctcccaagttcaagcgattctcctgcctcagcctcccaagtagctgggattacagg------------cgtgcgcc---------accacgcctggcta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        41385 132 -   1709092 ctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctctgcctcccaagttcaagcgattctcctgcctcagcctcccaagtagctgggattacagg------------cgtgcgcc---------accacgcccggcta
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17193900 132 - 121039945 ctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctctgcctcccaagttcaagcgattctcctgcctcagcctcccaaatagctgggattacagg------------cgtgcgcc---------accacgcccgacta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60882119 132 + 169600520 ctgtcgcccacgctggagtgcagtggcgcggtatcagctcactgcaacctctgcctcccaagttcaagcgattctcctgcctcagcctcccaagtagctgggattacagg------------cgtacgcc---------accacgcccggcta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108408823 132 - 171882078 ctgtcgctcacgctggagtgcagtggcgcggtatcagctcactgcaacctctgcctcccaagttcaagcgattctcctgcctcagcctcccaattagctgggattacagg------------cgtacgcc---------accacgcccggcta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        19300 103 -   2311642 ctgtcgcccacgctggagtgcagtggcgcggtatcagctcac-----------------------------ttatcctgcctcagcctcccaagtagctgggattacagg------------cgtacgcc---------accacgcccggcta
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        17444 132 -   1987038 ctgtcgcccacgctggagtgcagtggcgcggtatcagctcactgcaacctctccctcccaagttcaagcgattctcctgcctcagcctcccaagtagctgggattacagg------------cgtacgcc---------accacgcccggcta
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21097966 144 -  24206276 ctgtcacccacgctggagtgcagtggcgcgatatcagctcactgcaacctctgcctcccaagttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcgtgcgccaccacgtgcgcc---------accacgcccggcta
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        13164 132 -   1397330 ctgtcgcccacgctggagtgcagtggcgcggtatcagctcactgcaacctctgcctcccaagttcaagcgattctcctgcctcagcctcccaagtagctgggattacagg------------cgtacgcc---------accacgcccggcta
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        36475 100 -   1784207 ctgtcgcccacgctggagtgcagtggcgcgatgtcagctcactgcaa--------------------------------cgtcagcctcccaagtagctgggattacagg------------cgtgcgcc---------acgacgcccggcta
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22233807 131 + 158406734 c-gttacccaagctggagtgcaatggtgccgtctcggctcactataacctcggcctcctgagttcaagtgactctcctgcctcagcctcccaagtagctgggattatagg------------tgagcggc---------accaggcctggcta
i calJac3.chr6              I 2 C 0
s saiBol1.JH378108           50469549 132 +  54856640 ctgtcgcccaggctagagtactatggtgccgtctcggctcactgcaaccttggtctcccgagttcaagtggttctcctgcctcagcctcccgagtagctgggattacagg------------tgagcgcc---------accacgcctggcaa
i saiBol1.JH378108          I 2 C 0
s cebCap1.NW_016107610v1       613189 141 -   2910086 ctgttgcccaggctggagtgcaatggtgccgtctgagctcactgcaacctcggcctcccaagttcaagtgattgtcctgcctcagcctcccgagtagctgggattacagg------------tgagtaccatcacgcctaccacgcctggcta
i cebCap1.NW_016107610v1    I 21 C 0
s aotNan1.NW_018505940v1     40640744 132 +  42888418 ctgttgcccaggctggagtgcaatggtgttgtcttggctcactgcaacctcagcctcccgagttcaagtgattctcctgcctcagcctcccgagtagctgggattacagg------------tgagcacc---------accacgcctggcta
i aotNan1.NW_018505940v1    I 2 I 27
e micMur3.chr9              113265843 340 + 116334831 I
e proCoq1.NW_012142813v1        10849 287 +     80520 I
e mm10.chr7                  81346295 298 + 145441459 I
e dasNov3.JH570731            1794143 124 +   3943991 I
e canFam3.chr3               54404527   4 +  91889043 I
e otoGar3.GL873530             628137 390 -  36342412 I

a score=13820.000000
s hg38.chr15_KI270850v1_alt    330870 17 +    430880 ------atttttatatata---tttt
s panTro5.chr15              63484283 20 +  83230942 ------atttttgtttttggtttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80441669  1 +  99763055 ------a-------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        41517 17 -   1709092 ------atttttgtatttt---tttt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17194032 19 - 121039945 ------atttttgtatttt-tttttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60882251 13 + 169600520 ------atttttgtatact-------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108408955 13 - 171882078 ------atttttgtatact-------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        19403 13 -   2311642 ------atttttgtatact-------
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        17576 13 -   1987038 ------atttttgtatact-------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21098110 13 -  24206276 ------atttttgtatact-------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        13296 13 -   1397330 ------atttttgtatact-------
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        36575 13 -   1784207 ------atttttgtatact-------
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22233938 11 + 158406734 c-----ttttttgttt----------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50469681 11 +  54856640 c-----attttttttt----------
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       613330 16 -   2910086 cttttttttttttttt----------
i cebCap1.NW_016107610v1    C 0 C 0
e micMur3.chr9              113265843 340 + 116334831 I
e proCoq1.NW_012142813v1        10849 287 +     80520 I
e aotNan1.NW_018505940v1     40640876 27 +  42888418 I
e mm10.chr7                  81346295 298 + 145441459 I
e dasNov3.JH570731            1794143 124 +   3943991 I
e canFam3.chr3               54404527  4 +  91889043 I
e otoGar3.GL873530             628137 390 -  36342412 I

a score=682903.000000
s hg38.chr15_KI270850v1_alt    330887 76 +    430880 ttttt--------------------agtagagatggggttttg--ccattttggccaggctggtctccaacttctga-cctcaggtgatccacccg-cct
s panTro5.chr15              63484303 76 +  83230942 ttttt--------------------agtagagatggggttttg--ccattttggccaggctggtctccaacttctga-cctcaggtgatccaccca-cct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80441670 93 +  99763055 -----nnnnnnnnnnnnnnnnnnnnagtagagatggggtttttgcccatgttggccaggctggtctccaacttctga-cctcaggtgatccaccca-cct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        41534 76 -   1709092 ttttt--------------------agtagagatggggttttg--ccattttggccaggctggtctccaacttctga-cctcaggtgatccacccg-cct
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17194051 76 - 121039945 ttttt--------------------agtagagacggggtttcg--ccattttggccaggctggtctccaacttctga-cctcaggtgatccgcccg-cct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60882264 77 + 169600520 ttttt--------------------agtagagccggggtttcg--ccattttggctaggctggtctccaacttctga-cctcaggtgatccgcccgccct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108408968 77 - 171882078 ttttt--------------------agtagagccggggtttcg--ccattttggctaggctggtctccaacttctga-cctcaggtgatccgcccgccct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        19416 77 -   2311642 ttttt--------------------agtagagccggggttccg--ccattttggctaggctggtctccaacttctga-cctcaggtgatccgcccgccct
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        17589 77 -   1987038 ttttt--------------------agtagagccggggtttcg--ccattttggctaggctggtctccaacttctga-cctcaggtgatccgcccgccct
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21098123 77 -  24206276 ttttt--------------------agtagagtcggggtttcg--ccattttggctaggctggtctccaacttctga-cctcaggtgatccgcgcgccct
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        13309 77 -   1397330 ttttt--------------------agtagagccggggtttcg--ccattttggctaggctggtctccaacttctga-cctcaggtgatccgcccgccct
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        36588 77 -   1784207 ttttt--------------------agtagagccggggtttcg--ccattttggctaggctggtctccaacttccga-cctcaggtgatccgcccgccct
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22233949 76 + 158406734 gttta--------------------agtagagacagggtttcg--ccatgttggccaggctggtcttcaac-cctgaccctcagatgatctgccca-cct
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50469692 77 +  54856640 tttta--------------------agtagagacagggtttcg--ccatgttggccaggctggtctccaactcctgaccctcaggtgatctgccag-cct
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       613346 77 -   2910086 ttttt--------------------agcagagacagggtttcg--ccacgttggccaggctggtctccaactcctgaccctcaggtgatctgcccg-cct
i cebCap1.NW_016107610v1    C 0 I 251
s aotNan1.NW_018505940v1     40640903 77 +  42888418 ttttt--------------------tgtagagacagggtttcg--ccatgttggccaggctggtctccaactcctgaccctcaggtgatctgcccg-cct
i aotNan1.NW_018505940v1    I 27 I 242
e micMur3.chr9              113265843 340 + 116334831 I
e proCoq1.NW_012142813v1        10849 287 +     80520 I
e mm10.chr7                  81346295 298 + 145441459 I
e dasNov3.JH570731            1794143 124 +   3943991 I
e canFam3.chr3               54404527  4 +  91889043 I
e otoGar3.GL873530             628137 390 -  36342412 I

a score=1937386.000000
s hg38.chr15_KI270850v1_alt    330963 301 +    430880 tgtcctcccaaagtgctgggattacaggagtgagccattgcacccggccAGCC------------ttttttttt----tgagatagagtcttgctcagttgtccaggcttcagtgaagtgac-atgg-taacagctcactgcagcctcgatttcctgggctcacatgatcctgctgcctcagtctccctagtagctggaaccacaggcacacaccaccatgcct--------ttttttttttttggtagaaat-ggggtct-cccatgttgctcaggctggtctcaaacccctggggctcaagcaatcctcttgcctcagcctcccaca
s panTro5.chr15              63484379 301 +  83230942 tgtcctcccaaagtgctgggattacaggagtgagccattgcacccagccAGCC------------ttttttttt-----gagatagagtcttgctcagttgcccaggcttcagtgaagtgat-atgg-taacagctcactgcagcctcgatttcctgggctcacatgatcctgctacctcagtctccctagcagctggaaccacaggc------caccatgcctaa-ttttttttttttttttttgtagaaat-ggggtct-cctatgttgctcaggctggtctcaaacccctggggctcaagcaatcctcttgcctcagcctcccaca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80441763 299 +  99763055 tgtcctcccaaagtgctgggattacaggagtgagccattgcacccagccAGCC------------ttttttttg-----tagatagagtcttgctcagttgcccaggcttcagtgaagtgat-atgg-taacagctcactgcagcctcgatttcctgggctcacatgatcctgctacctcagtctccctagcagctggaaccacaggc------caccatgcct---taatttttttttttttttgtagaaat-ggggtct-cctatgttgctcaggctggtctcaaacccctggggctcaagcaatcctcttgcctcagcctcccaca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        41610 314 -   1709092 tgtcctcccaaagtgctgggattacaggagtgagccattgcacccagccAGCC------------ttttttttttttttgagatagagtcttgctcagttgcccaggcttcagtgaagtgacaatgg-taacagctcactgcagcctcaatttcctgggctcacatgatcctgctgcctcagtctccctagtagctggaaccacaggcacacaccaccatgcctaatttttttttttttttttttgtagaaat-ggggtct-cctatgttgctcaggctggtctcaaacccctggggctcaagcaatcctcttgcctcagcctcccaca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17194127 303 - 121039945 tgtcttcccaaagtgctgggattacaggtgtgagccattgcacccggccAGCC------------ttttttttt---tttttatagagtcttgctcagttgcccaggcttcagtgaagtgac-acag-taacagctcactgcagcctcgatttcctgagttcacatgatcctcctgcctcagtctccctagtagctggaaccacaggcacacaccaccatggcta-------tttttttttttttgcagagat-ggggtct-cctatgttgctcaggctggtctcaaacctctggggctcaagcaatcctcttgcctcagcctcccaca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60882341 324 + 169600520 cgtcctcccaaagtgctgggattacaggtgtgagccattgcacccggccAGCCttttttttttttttttttttttttttttGAGATAgtcttgctcagttgcccaggcttcagtgaagtgac-acggttaacagctcactgcagcctcaatttcctgggctcacatgatactcctgccccagcctccccagtagctggaactataagcacacaccaccatgcctggctaa---ttttttttttttgtagagat-ggggtctccctatgttgctcaggctggtctcaaacccctagggctcaagcaatcctcttgcctcagcctcccaca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108409045 323 - 171882078 cgtcctcccaaagtgctgggattacaggtgtgagccattgcacccggccAGCCCtttttttttttttttttttttttttttgaaatagtcttgctcagttgcccaggcttcagtgaagtgac-acggttaacagctcactgcagcctcaatttcctgggctcacatgatactcctgccccagcctccccagtagctggaactataagcacacaccaccatgcctggctaa----tttttttttttgtagagat-ggggtctccctatgttgctcaggctggtctcaaacccctagggctcaagcaatcctcttgcctcagcctcccaca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        19493 318 -   2311642 cgtcctcccaaagtgctgggattacaggtgtgagccattgcacccggccAGCC------ttttttttttttttttttttttgagatagtcttgctcagttgcccaggcttcagtgaagtgac-acggttaacagctcactgcagcctcaatttcctgggctcacatgatcctcctgccccagcctccccagtagctggaactataagcacacaccaccatgcctggctaa---ttttttttttttgtagagat-ggggtctccctatgttgctcaggctggtctcaaacccctagggctcaagcaatcctcttgcctcagcctcccaca
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        17666 314 -   1987038 cgtcctcccaaagtgctgggattacaggtgtgagccattgcacccggccAGCC---------tttttttttttttttttttgagatagtcttgctcagttgcccaggcttcagtgaagtgac-acggttaacagctcactgcagcctcaatttcctgggctcacatgatcctcctgcctcagcctccccagtagctggaactacaagcacacaccgccatgcctggctaa----gttttttttttgtagagat-ggggtctccctatgttgctcaggctggtctcaaacccctagggctcaagcaatcctcttgcctcagcctcccaca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21098200 311 -  24206276 cgtcctcccaaagtgctgggattacaggtgtgagccattgcacccggccAGCC----------ttttttttttttttttttgagatagtcttgctcagttgcccaggcttcagtgaagtgac-acggttaacagctcactgcagcctcaatttcctgggctcacatgatcctcctgcctcagcctccccagtagctggaactataagcacacaccactatgcctggctaa------tttttttttgtagagat-ggtgtctccctatgttgctcaggctggtctcaaacccctagggcttaagcaatcctcttgcctcagcctcccaca
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        13386 316 -   1397330 cgtcctcccaaagtgctgggattacaggtgtgagccattgcacccggccAGCC------ttttttttttttttttttttttgagatagtcttgctcagttgcccaggtttcagtgaagtgac-acggttaacagctcactgcagcctcaatttcctgggctcacatgatcctcctgcctcagcctccccagtagctggaactacaagcacacaccgccatgcctggctaa-----gtttttttttgtagagat-ggggtctccctatgttgctcaggctggtctcaaacccctagggctcaagcaatcctcttgcctcagcctcccaca
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        36665 305 -   1784207 cgtcctcccaaagtgctggtattacaggtgtgagccattgcacccggccAGCC------------------ttttttttttcagatagtcttgctcagttgcccaggcttcagtgaagtgac-acagttaacagctcactgcagcctcaatttcctgggctcacatgatcctcctgcctcagcctccccagtagctggaactacaagcacacaccaccatgcctggctaa-----tttttttttcgtagagatgggggtctccctgtgttgctcaggctggtctcaaacccctagggctcaagcaatcctcttgcctcagcctcccaca
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22234025 238 + 158406734 --------cAAAG---------------------------------GCCAGCC---------------------tttttgagacacggtcttgctcagttgcccaggatttagtgaagtgat-atgc-taatagttcactgccacctcaatttcctgtgctcacatgatcttcctgcctcagtctccccagtagctggaaatacaggcacacaccaccatgtccagctag--------tttttttgtggagat-ggggt------------------ctggtctcaaacccccagggctcaagcgatcctcctgccgcagcttcccaca
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50469769 251 +  54856640 --------cAATG---------------------------------GCCAGCC---------------------tttttgagacacggtcttgctcagttgcccaggatttagtgaagtgat-atgc-taagagtttgctgctgcctcaatttcctgtgctcacatgatcctcctgcctcagtctccccagtaggtggaactacaggcaca---caccatgtc--gttag--------tttttttgtagagat-ggggtcttcttatgttgtccaggctggtctcaaacccccagggctcaagcgatcctcctgctgcagcttcccaca
i saiBol1.JH378108          C 0 C 0
e micMur3.chr9              113265843 340 + 116334831 I
e proCoq1.NW_012142813v1        10849 287 +     80520 I
e aotNan1.NW_018505940v1     40640980 242 +  42888418 I
e mm10.chr7                  81346295 298 + 145441459 I
e dasNov3.JH570731            1794143 124 +   3943991 I
e canFam3.chr3               54404527   4 +  91889043 I
e cebCap1.NW_016107610v1       613423 251 -   2910086 I
e otoGar3.GL873530             628137 390 -  36342412 I

a score=1551875.000000
s hg38.chr15_KI270850v1_alt    331264 308 +    430880 gtgctg--attgtaagcgtgagccactgtgcccagtcTGGCCTCTCC-------------tttatttatttatttattta----gagac--agtctcactctgttgcccaggct-ggagtgcagtggcatggtcttggctcaccgcaacctccacctcccgggttcaagagattctcctgcctgagcctcttgggtagctgggattagaggtgcctgcaactaccacctggctaattttttgtattttcagtagagaaggggtttcactatgttggccaggctggtctcaaaatcctgacctcgtgatccgcccaccttggcctcccaat
s panTro5.chr15              63484680 312 +  83230942 gtgctg--attgtaagcatgagccactgtgcccagtcTGGCCTCTCC-------------tttatttatttatttatttatttagagac--agtctcactctgttgcccaggct-ggagtgcagtggcatggtcttggctcaccgcaacctccacctcccgggttcaagagattctcctgcctgagcctcttgggtagctgggattagaggtgcctgcaactaccacctggctaattttttgtattttcagtagagaaggggtttcactatgttggcaaggctggtctcaaaatcctgacctcgtgatccgcccaccttggcctcccaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80442062 308 +  99763055 gtgctg--attgtaagcatgagccactgtgcccagtcTGGCCTCTCC-------------tttatttatttatttattta----gagac--agtctcactctgttgcccaggct-ggagtgcagtggcatggtcttggctcaccgcaacctccacctcccgggttcaagagattctcctgcctgagcctcttgggtagctgggattagaggtgcctgcaactaccacctggctaattttttgtattttcagtagagaaggggtttcactatgttggcaaggctggtctcaaaatcctgacctcgtgatccgcccaccttggcctcccaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        41924 325 -   1709092 gtgctg--actgtaagcgtgagccactgtgcccagtcTGGCCTCTCCtttttttattttatttatttatttatttatttatttagagac--agtctcactctgttgcccaggct-ggagtgcagtggcatggtcttggctcaccgcaacctccacctcccgggttcaagagattctcctgcctgagcctcttgggtagctgggattagaggtgcctgcaaccaccacctggctaattttttgtattttcagtagagaaggggtttcactatgttggccaggctggtctcaaaatcctgacctcgtgatccacccaccttggcctcccaat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17194430 322 - 121039945 gtgctg--attataagcgtgagccactgtgcccagtcTGGCCTCTCCttttttttaat--tttatttatttatttatttt----gagacggagtcccactctgtggcccaggctgggagtgcagtggcatggtcttggctcacagcaacctccacctcctgggttcaagaaattctcctgcctgagcctcccaggtagctgggattacaggtgcctgccaccaccacccggctaattttttgtattttcagtacagaaggggtttcaccatgttggccaggctggtctcaaaatcctgacttcgtgatccacccaccttggcctcccagt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60882665 302 + 169600520 gtgctgagattataagcgtgagccagtgtgcccagtcTGGCCTCCCCt------------tttatttttt--------------gagacggagtctcactctattgcccaggct-ggagtgcagtggcatggtctgggctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccaagtagctgcgattacaagcgcctgccacca-cacccggctaattttttgtattttcaatagagacagggtttcaccatgttggccaggctggtctcaaaatcctgacctcgtgatctgcccatcttggcctcccaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108409368 302 - 171882078 gtgctgagattataagcgtgagccagtgtgcccagtcTGGCCTCCCCt------------tttatttttt--------------gagacggagtctcactctattgcccaggct-ggagtgcagtggcatggtctgggctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccaagtagctgcgattacaagcgcctgccacca-cacccggctaattttttgtattttcaatagagacggggtttcaccatgttggccaggctggtctcaaaatcctgacctcgtgatctgcccatcttggcctcccaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        19811 302 -   2311642 gtgctgagattataagcgtgagccagtgtgcccagtcTGGCCTCCCCt------------tttatttttt--------------gagacggagtctcactctattgcccaggct-ggagtgcagtggcatggtctgggctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccaagtagctgctattacaagcgcctgccacca-cacccggctaattttttgtattttcaatagagacggggtttcaccatgttggccaggctggtctcaaaatcctgacctcgtgatctgcccatcttggcctcccaaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        17980 294 -   1987038 gtgctgagattataagcgtgagccactgtgcccagtcTGGCCTCCCCt------------tttatttttt--------------gagacggagtctcactctattgcccaggct-ggagtgcagtggcatggtctgggctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccaagtagctgcgattacaagcgcttgccacca-cacccggctaattttttgtattttcaatagagacggggtttcaccatgttggccaggctggtctcaaaatcc--------tgatctgcccatcttggcctcccaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21098511 301 -  24206276 gtgctgaga-tataagcgtgagccactgtgcccagtcTGGCCTCCCCt------------tttatttttt--------------gagacggagtctcactctcttgctcaggct-ggagtgcagtggcatggtctggactcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccaagtagctgcgattacaagcacctgccacca-cacctggctaattttttgtattttcaatagagacggggtttcaccatgttggctaggctggtctcaaaatcctgacctcgtgatctgcccatcttggcctcccaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        13702 294 -   1397330 gtgctgagattataagcgtgagccactgtgcccagtcTGGCCTCCCCt------------tttatttttt--------------gagacggagtctcactccattgcccaggct-ggagtgcagtggcatggtctgggctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccaagtagctgcgattacaagcacctgccacca-cacccggctaattttttgtattttcaatagagacggggtttcaccatgttggccaggctggtctcaaaatcc--------tgatctgcccatcttggcctcccaaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        36970 311 -   1784207 gtgctgaaattataagcgtgagccactgggcccagtcTGGCCTCCCCttttgttttaaa-tttatttttt--------------gagatggagtctcactc--ttgcccaggct-ggagtgcagtggcatggtctgggctcactgcaacctctgcctcccgggttcaagtgattctcctgcttcagcctcccaaatagctgcgattacaagcgcctgccacca-cacccggctaattttttgtattttcaatagagatggggtttcaccatgttggccaggctagtctcaaaatcctgacctcgtaatctgcccatcttggcctcccaaa
i colAng1.NW_012117110v1    C 0 C 0
e micMur3.chr9              113265843 340 + 116334831 I
e proCoq1.NW_012142813v1        10849 287 +     80520 I
e aotNan1.NW_018505940v1     40640980 242 +  42888418 I
e mm10.chr7                  81346295 298 + 145441459 I
e calJac3.chr6               22234263   0 + 158406734 C
e dasNov3.JH570731            1794143 124 +   3943991 I
e canFam3.chr3               54404527   4 +  91889043 I
e cebCap1.NW_016107610v1       613423 251 -   2910086 I
e otoGar3.GL873530             628137 390 -  36342412 I
e saiBol1.JH378108           50470020   0 +  54856640 C

a score=353748.000000
s hg38.chr15_KI270850v1_alt    331572 36 +    430880 gtgctgggattacaggcgtgagccaccgcgcccggc
s panTro5.chr15              63484992 36 +  83230942 gtgctgggattacaggcgtgagccaccgcgcccggc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80442370 36 +  99763055 gtgctgggattacaggcgtgagccaccgcgcccagc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        42249 36 -   1709092 gtgctgggattacaggtgtgagccaccgcgcccggc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17194752 36 - 121039945 gtgctgggattacaggcgtgagccaccgcgcccggc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60882967 36 + 169600520 gtgctgggattacaggcctgagccaccgtgcccggc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108409670 36 - 171882078 gtgctgggattacaggcctgagccaccgtgcccggc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        20113 36 -   2311642 gtgctgggattacaggcctgagccaccgtgcccggc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        18274 36 -   1987038 gtgctgggattacaggcctgagccaccgtgcccggc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21098812 36 -  24206276 gtgctgggattacaggcctgagccaccatgcccggc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        13996 36 -   1397330 gtgctgggattacaggcctgagccaccgtgcccggc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        37281 36 -   1784207 gtgctgggattataggcctgagccaccgtgcccggc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22234263 36 + 158406734 gtgctgagattataagcatgagccactgtgcccagT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50470020 36 +  54856640 gtgctgagattataagcatgagccactgtgcccagt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       613674 36 -   2910086 gtgctgagattataagcgtgagccactgtgcccagt
i cebCap1.NW_016107610v1    I 251 C 0
s aotNan1.NW_018505940v1     40641222 36 +  42888418 gtgctgagattataagcgtgagccactgtgcccagt
i aotNan1.NW_018505940v1    I 242 C 0
e micMur3.chr9              113265843 340 + 116334831 I
e proCoq1.NW_012142813v1        10849 287 +     80520 I
e mm10.chr7                  81346295 298 + 145441459 I
e dasNov3.JH570731            1794143 124 +   3943991 I
e canFam3.chr3               54404527  4 +  91889043 I
e otoGar3.GL873530             628137 390 -  36342412 I

a score=19486.000000
s hg38.chr15_KI270850v1_alt    331608 3 +    430880 cAG
s panTro5.chr15              63485028 3 +  83230942 cAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80442406 3 +  99763055 cAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        42285 3 -   1709092 cAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17194788 3 - 121039945 cAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60883003 3 + 169600520 cAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108409706 3 - 171882078 cAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        20149 3 -   2311642 cAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        18310 3 -   1987038 cAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21098848 3 -  24206276 cAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        14032 3 -   1397330 cAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        37317 3 -   1784207 cAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22234299 3 + 158406734 TTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50470056 3 +  54856640 cTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       613710 3 -   2910086 cTA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40641258 3 +  42888418 cTA
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1794267 3 +   3943991 CAG
i dasNov3.JH570731          I 124 C 0
e micMur3.chr9              113265843 340 + 116334831 I
e proCoq1.NW_012142813v1        10849 287 +     80520 I
e mm10.chr7                  81346295 298 + 145441459 I
e canFam3.chr3               54404527 4 +  91889043 I
e otoGar3.GL873530             628137 390 -  36342412 I

a score=633698.000000
s hg38.chr15_KI270850v1_alt    331611 67 +    430880 GCCTCTCCTTTTGTGAGGAGACTCCCCCACCTTGCCCAAT----AGTTCTTGCACCT---CTCTCAGA-AGAGAC
s panTro5.chr15              63485031 67 +  83230942 GCCTCTCCTTTCGTGAGGAGACTCCCCCACCTTGCCCAAT----AGTTCTTGCACCT---CTCTCAGA-AGAGAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80442409 67 +  99763055 GCCTCTCCTTTCGTGAGGAGACTCCCCCACCTTGCCCAAT----AGTTCTTGCACCT---CTCTCAGA-AGAGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        42288 67 -   1709092 GCCTCTCCTTTCGTGAGGAGACTCCCCCACCTTGCCCAAT----AGTTCTTGCACCT---CTCTCAGA-AGAGAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17194791 62 - 121039945 GCATCTC-----GTGAGGAGAATCCCCCACCTTGCCCAAT----AGTTCTTGCACCT---TTCTCAGA-AGAGAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60883006 67 + 169600520 GCCTCTCATTTTGTGAGGAGACTCCCCCACCTTGCCCAAT----AGTTCTTGCACCT---CTCTCACA-AGAGCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108409709 67 - 171882078 GCCTCTCATTTTGTGAGGAGACTCCCCCACCTTGCCCAAT----AGTTCTTGCACCT---CTCTCACA-AGAGCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        20152 67 -   2311642 GCCTCACATTTTGTGAGGAGACTCCCCCACCTTGCCCAAT----AGTTCTTGCACCT---CTCTCACA-AGAGCC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        18313 67 -   1987038 GCCTCTCATTTTGTGAGGAGACTCCCCCACCTTGCCCAAT----AGTTCTTGCACCA---CTCTCACA-AGAGCC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21098851 67 -  24206276 GCCTCTCATTTTGTGAGAAGACTCCCCCACCTTGCCCAAT----AGTTCTTGCACCT---CTCTCACA-AGAGCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        14035 67 -   1397330 GCCTCTCATTTTGTGAGGAGACTCCCCCACCTTGCCCAAT----AGTTCTTGCACCA---CTCTCACA-AGAGCC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        37320 67 -   1784207 GCCTCTCATTTTGTGAGGAGACTCCCCCACCTTGCCCAAT----AGTTCTAACACCT---CTCTTACA-AGAGCC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22234302 67 + 158406734 GCCTCTCCTTTAGTGAGGAGACTCCTCCACCCTTCCCAAT----AGTTCTTGCACCT---CTTTCAGA-AGAGAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50470059 67 +  54856640 GCCTCTCCTTTAGTGAGGAGACTCCCCCACCCTTCCCAAT----AGTTTTTGCGCCT---CTTTCAGA-AGAGAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       613713 67 -   2910086 GCCTCTCCTTTAGTGAGGAGACTCCCCCACCCTTCCCAAA----AGTTCTTGCACCT---CTTTCAGA-AGAGAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40641261 67 +  42888418 GCCTCTCCTTTATTGAGGAGA-TCCCCAACCCTTCCCAAG----AGTTCTTGCACCT---CTTTCAAAGAGCAAC
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54404531 70 +  91889043 GCCTCTCCTCCTGCTGAAGGACGCCCC-ACCCCCTGCAACAGTGAGTTCTTGCACCT---CTCACAAGGAGGGA-
i canFam3.chr3              I 4 I 1
s dasNov3.JH570731            1794270 59 +   3943991 GCCTCATTCTTGGCTGAG-------CTCACCTCGTG--------AGCTCTTGCACCCAGATTTACAGA-AGGAAT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113265843 340 + 116334831 I
e proCoq1.NW_012142813v1        10849 287 +     80520 I
e mm10.chr7                  81346295 298 + 145441459 I
e otoGar3.GL873530             628137 390 -  36342412 I

a score=12376.000000
s hg38.chr15_KI270850v1_alt    331678 1 +    430880 A
s panTro5.chr15              63485098 1 +  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80442476 1 +  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        42355 1 -   1709092 A
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17194853 1 - 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60883073 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108409776 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        20219 1 -   2311642 A
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        18380 1 -   1987038 A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21098918 1 -  24206276 A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        14102 1 -   1397330 A
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        37387 1 -   1784207 A
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22234369 1 + 158406734 A
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50470126 1 +  54856640 A
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       613780 1 -   2910086 A
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40641328 1 +  42888418 A
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             628527 1 -  36342412 A
i otoGar3.GL873530          I 390 C 0
e micMur3.chr9              113265843 340 + 116334831 I
e proCoq1.NW_012142813v1        10849 287 +     80520 I
e mm10.chr7                  81346295 298 + 145441459 I
e dasNov3.JH570731            1794329 0 +   3943991 C
e canFam3.chr3               54404601 1 +  91889043 I

a score=38000.000000
s hg38.chr15_KI270850v1_alt    331679 2 +    430880 GC
s panTro5.chr15              63485099 2 +  83230942 GC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80442477 2 +  99763055 GC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        42356 2 -   1709092 GC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17194854 2 - 121039945 GC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60883074 2 + 169600520 GC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108409777 2 - 171882078 GC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        20220 2 -   2311642 GC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        18381 2 -   1987038 GC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21098919 2 -  24206276 GC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        14103 2 -   1397330 GC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        37388 2 -   1784207 GC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22234370 2 + 158406734 GC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50470127 2 +  54856640 GC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       613781 2 -   2910086 GC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40641329 2 +  42888418 GC
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        11136 2 +     80520 GC
i proCoq1.NW_012142813v1    I 287 C 0
s otoGar3.GL873530             628528 2 -  36342412 GC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54404602 2 +  91889043 GC
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1794329 2 +   3943991 GC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113265843 340 + 116334831 I
e mm10.chr7                  81346295 298 + 145441459 I

a score=988065.000000
s hg38.chr15_KI270850v1_alt    331681 76 +    430880 TTCAGTATGCAGGGTTCCCTCCACCTCAGACTAAATTGGAG---GTTCCCAAA-GAATCGGTC-CAAC-AGCTGGGCC-----------CAGG
s panTro5.chr15              63485101 76 +  83230942 TTCAGTATGCAGGGTTCCCTCCACCTCAGACTAAATTGGAG---GTTCCCAAA-GAATCGGTC-CAAC-AGCTGGGCC-----------CAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80442479 76 +  99763055 TTCAGTATGCAGGGTTCCCTCCACCTCAGACTAAATTGGAG---GTTCCCAAA-GAATCGGTC-CAAG-AGCTGGGCC-----------CAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        42358 76 -   1709092 TTCAGTATGCAGGGTTCCCTCCACCTCAGACTAAATTGGAG---GTTCCCAAA-GAATCGGTC-CAAC-AGCTGGGCC-----------TAGG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17194856 75 - 121039945 TTCAGTATGCA-GGTTCCCTCCACCTCAGACTAAATTAGAG---GTTCCCAAA-GAATGAGTC-CAAC-AGCTGGGCC-----------CAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60883076 76 + 169600520 TTCAGTATGCCGGGTTCCCTCTACCTCAGACTAAGTTGGAG---GTTCCCAAA-GAATCAGTC-CAAC-AGCTGGGCC-----------CAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108409779 76 - 171882078 TTCAGTATGCCGGGTTCCCTCTACCTCAGACTAAGTTGGAG---GTTCCCAAA-GAATCAGTC-CAAC-AGCTGGGCC-----------CAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        20222 76 -   2311642 TTCAGTATGCCGGGTTCCCTCTACCTCAGACTAAGTTGGAG---GTTCCCAAA-GAATCAGTC-CAAC-AGCTGGGCC-----------CAGG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        18383 76 -   1987038 TTCAGTATGCAGGGTTCCCTCTACCTCAGACTAAGTTGGAG---GTTCCCAAA-GAATCAGTC-CAAC-AGCTGGGCC-----------CACG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21098921 76 -  24206276 TTCAGTATGCAGGGTTCCCACTACCTCAGACTAAGTTGGAG---GTTCCCAAA-GAATCAGTC-CAAC-AGCTGGGCC-----------CAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        14105 76 -   1397330 TTCAGTATGCAGGGTTCCCTCTACCTCAGACTAGGTTGGAG---GTTCCCAAA-GAATCAGTC-CAAC-AGCTGGGCC-----------CAGG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        37390 76 -   1784207 TTCAGTATGCAGGGTTCCCTCCACCTCAGACTAAGTTAGAG---GTTCCCAAA-GAATCAGTC-CTAC-AGCTGGGCC-----------CGGG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22234372 76 + 158406734 TTCACTATGCAGGGTTCCCTCTACCTCAACCTAAATTGGAG---TTTCCCAAA-GCATCAGTC-CAAC-AGCTGGGCC-----------TAGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50470129 77 +  54856640 TTCAGTATGCAGGGTTCCCTCTACCTCAACCTAAACTGGAG---TTTCCCAAA-GAATTAGTC-CAACAAGTTGGGCC-----------TAGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       613783 76 -   2910086 TTCAGTATGCAGGGTTCCCTCTACCTCAACCTAAATTGGAG---TTTTCCAAA-GAATCAGTC-CAAC-AGCTGGGCC-----------TAGG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40641331 76 +  42888418 TTCAGTA-GCAGGGT--CCTCTACCTC-ACTTAAATTGGGAGTTTTTCCCAAACAAATCAGTC-CAAC-AGCTGGGCC-----------TAGG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113266183 77 + 116334831 TTCAGTGTGCAGGGTTTCCTCCTCTTTAGACTAAATTGGAG---TCTCCCCAA-ACATCAGTCCAAAC-AGCTGGGCC-----------CAGG
i micMur3.chr9              I 340 I 85
s proCoq1.NW_012142813v1        11138 77 +     80520 TTTAGGATGCAGGGTTTCCTCCACTTCAGACTTAATTGGAG---TCTCTCAAA-AGATCAGTCCTAAC-AGCTAGGCT-----------CAGG
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             628530 59 -  36342412 TTCTGTCTGCAGGGTCTCTCACTCGTCAGATTCAAATGGAG---GCACCCAAA-AGATCAGTT------------------------------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54404604 73 +  91889043 TTTGATGTGCCAGGTTCCCTCTACCTCAGACTAAAATGGAA------TCCAAA-GGACCAGTC-CAGC-AGCTGGGCC-----------CAGG
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1794331 85 +   3943991 TTTATTATGTAGGGTTCCTGCCACCGTA--CTATATTGGAG---TCTCTTAAA-GGATCAGCC-CAGT-AGCTGGGTCAGCCTGCCTATCAGG
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81346295 298 + 145441459 I

a score=728718.000000
s hg38.chr15_KI270850v1_alt    331757 85 +    430880 CCAACTCGACTGaa-----aaaaaaa--aaaaaaaa-TCAGCAGACCTTGCCAGAAATCCTGTGAG-CTCTGA--GA--AAGT-TCCGTTG-ATAGGGCT
s panTro5.chr15              63485177 81 +  83230942 CCAACTCGACTGAA-----AAAAAAA--AAAA-----TCAGCAGACCTTGCCACAAATCCTGTGAG-CTCTGA--GA--AAGT-TCCGTTG-ATAGGGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80442555 78 +  99763055 CCAACTCGACTGAA-----AAAAAAA--A--------TCAGCAGACCTTGCCACAAATCCTGTGAG-CTCTGA--GA--AAGT-TCCGTTG-ATAGGGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        42434 83 -   1709092 CCAACTCGACTGAA-----AAAAAAA--AAAAAA---TCAGCAGACCTTGCCACAAATCCTGTGAG-CTCTGA--GA--AAGT-TCTGTTG-ATAGGGCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17194931 81 - 121039945 CTGACTGaaaaaaa-----aaaaaaa--aaaa-----TCAGCAGACCTTGCCACAAATCCTGTGAG-CTCTGA--GA--AAGT-TCAGTTG-ATAGGGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60883152 86 + 169600520 CCAACTCGACTGGG-----AAAAAAA--AAAAAAAAATCAGCAGACCCTGCCACAGATCCTGTGAG-CTCTAA--AA--AAGT-TCAATTG-ACAGGGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108409855 86 - 171882078 CCAACTCGACTGGG-----AAAAAAA--AAAAAAAAATCAGCAGACCTTGCCACAGATCCTGTGAG-CTCTAA--AA--AAGT-TCAATTG-ACAGGGCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        20298 85 -   2311642 CCAACTCGACTGGG------AAAAAA--AAAAAAAAACCAGCAGACCTTGCCACAGATCCTGTGAG-CTCTAA--AA--AAGT-TCAATTG-ACAGGGCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        18459 88 -   1987038 CCAACTCGACTGGG---Gaaaaaaaa--aaaaaaaaaTCAGCAGACCTTGCCACAGATCCTGTGAG-CTCTAA--AA--AAGT-TCAATTG-ACAGGGCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21098997 88 -  24206276 CCAACTCGACTGGG-----AAAAAAATTTAAAAAACATCAGCAGACCTTGCCACAGATCCTGTGAG-CTCTAA--AA--AAGT-TCAACTG-ACAGGGCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        14181 87 -   1397330 CCAACTCGACTGGG-----GGAAAAA-AAAAAAAAAATCAGCAGACCTTGCCACAGATCCTGTGAG-CTCTAA--AA--AAGT-TCAATTG-ACAGGGCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        37466 81 -   1784207 CCAACTCGACTGGA-----AAAAAAA--AAAAAAAT-----CAGACCTTGCCACAGATCCTGTGAG-CTCTGA--AA--AAGT-TCAATTG-ATAGGGCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22234448 79 + 158406734 CCAACTTGATTGAA-----AAACAAT--CA-------GCAGTACACCCTGTCACAAATCCTAGGAG-CTTTGA--GA--AAGT-TCAGTTG-ATAGGGTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50470206 79 +  54856640 CCAACTTGACTGAA-----GAACAAT--CA-------GTAGTACACCCTGTCACAAATCCTAGGAG-CTTTGA--GA--AAGT-TCAGTTG-ATAGGGTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       613859 79 -   2910086 CCAACTTGACTGAA-----AAACAAT--CA-------GTAGTACACTCTGTCACAAATCCTAGGAG-CTCTAA--GA--AAGT-TCAGTTG-ATAGGGTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40641407 77 +  42888418 CCAACTTGACTGAA-----AAACAAT--CA-------GCAGTACACC--GTCACAAATCCTAGGAG-CTTTGA--GA--AAGT-TCAGTTG-ATAGGGTT
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        11215 91 +     80520 TCCACTTCACCGGaaaaaaaaaaaaa--aaaaaaTCAGCAGCAGACCCTGTGACAAATCCTGGGGA-CTGTGA--GA--GAGT-CCAGGTG-ATAGGGCT
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             628589 70 -  36342412 -----------------------AAA--AAAAACTCAGCAGCAGACCCTGTCACAGAT-CTAGGGG-CTAGGA--GAACAAGTCCCAAGTG-ACAGGCCT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54404678 77 +  91889043 ACAACCTACCTGGA---------AAA-----------TCAGCAGACCCCCTCACAAATCCTGGGAGCCTGTGATCAG--GAGT-CCAAATGAACAGGGAT
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1794416 76 +   3943991 -----TCCACTCTA-----AAAAAAA--AATCA----TCAGCAGACTGTCTTACAGATTCTGGGAG-CACTTA---A--GAGT-CCATATC-ATAGGGCT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113266260 85 + 116334831 I
e mm10.chr7                  81346295 298 + 145441459 I

a score=51737.000000
s hg38.chr15_KI270850v1_alt    331842 4 +    430880 CTCT
s panTro5.chr15              63485258 4 +  83230942 CTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80442633 4 +  99763055 CTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        42517 4 -   1709092 CTCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17195012 4 - 121039945 CTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60883238 4 + 169600520 CTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108409941 4 - 171882078 CTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        20383 4 -   2311642 CTCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        18547 4 -   1987038 CTCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21099085 4 -  24206276 CTCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        14268 4 -   1397330 CTCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        37547 4 -   1784207 CTCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22234527 4 + 158406734 CTCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50470285 4 +  54856640 CTCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       613938 4 -   2910086 CTCT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40641484 4 +  42888418 CTCT
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        11306 4 +     80520 CCCT
i proCoq1.NW_012142813v1    C 0 I 3
s otoGar3.GL873530             628659 2 -  36342412 GA--
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81346593 4 + 145441459 ccct
i mm10.chr7                 I 298 C 0
s canFam3.chr3               54404755 4 +  91889043 CTCC
i canFam3.chr3              C 0 I 3
s dasNov3.JH570731            1794492 4 +   3943991 CTCT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113266260 85 + 116334831 I

a score=3141362.000000
s hg38.chr15_KI270850v1_alt    331846 233 +    430880 ---GAACAGCAAAAACCCAA-TCACTCCC-TCTCAGAAAGGAACTG---CATCATCATAGGTGGGTCCAAGAGGATG-AGCAGCCTCCGAAGAAGTAATAGG-CCAAGACTTCCAGGAGAAGCTGAGAA-CAAGTGGCTTCTG------CTGGCACGTGAGCAGCTGTGCCTCCAGCATTCTCTAAGCT-GGGCCT---GGAGGCTGTG--AGGA---CCCCCGAGAAGCTAAGATATG-AGGAC--TTTTTATATTTGGGC
s panTro5.chr15              63485262 233 +  83230942 ---GAACAGCAAAAACCCAA-TCACTCCC-TCTCAGAAAGGAACTG---CATCATCATAGGTGGGTCCAAGAGGATG-AGCAGCCTCCGAAGAAGTAATAGG-CCAAGACTTCCAGGAGAAGCTGAGAA-CAAGTGGCTTCTG------CTGGCATGTGAGCAGCTGTGCCTCCAGCATTCTCTAAGCT-GGGCCT---GGAGGCTGTG--AGGA---CCCCCGAGAAGCTAAGATATG-AGGAC--TTTTTATATTTGGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80442637 233 +  99763055 ---GAACAGCAAAAACCCAA-TCACTCCC-TCTCAGAAAGGAACTG---CATCATCATAGGTGGGTCCAAGAGGATG-AGCAGCCTCCGAAGAAGTAATAGG-CCAAGACTTCCAGGAGAAGCTGAGAA-CAAGTGGCTTCTG------CTGGCATGTGAGCAGCTGTGCCTCCAGCATTCTCTAAGCT-GGGCCT---GGAGGCTGTG--AGGA---CCCCCGAGAAGCTAAGATATG-AGGAC--TTTTTATATTTGGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        42521 233 -   1709092 ---GAACAGCAAAAACCCAA-TCACTCCC-TCTCAGAAAGGAACTG---CATCATCATAGGTGGGTCCAAGAGGATG-AGCAGCCTCCGAAGAAGTAATAGG-CCAAGACTTCCAGGAGAAGCTGAGAA-CAAGTGGCTTCTG------CTGGCACGTGAGCAGCTGTGCCTCCAGCATTCTCTAAGCT-GGGCCT---GGAGGCTGTG--AGGA---CCCCCGAGAAGCTAAGATATG-AGGAC--TTTTTATATTTGGGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17195016 233 - 121039945 ---CAACAGCAAAAACCAAA-TCACTCCC-TCTCAGAAAGGAACTG---GGTCATTATAGGTGGGTCCAAGAGGATG-AACAGCCTCCGAAGAAGTAACAGG-CCAAGGCTTCCAGGAGAAGCTGAGAA-CAAGTGGCTTCTG------CTGGCACGTGAGCAGCTGTGCCTCCAGCATTCTCCAAGCT-GAGCCT---GGAGGCTGTG--AGGA---CCCCTGAGAAGCTAAGATATG-AGGAC--TTTTTATATTTGGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60883242 233 + 169600520 ---GAACAGCAAAAACCAAA-TCATTCCC-TCTCAGAAAGGAACTC---AGTCATCATAGGTGGGTCCAAGAGGATG-AGCAGCCTCTGAAGAAGTAATAAG-CCAAGAATTGCAGGAGAAGCTGAGAA-CAAGTGGCTTCTG------CTGGCCCATGAGCAGCTGTGCCTCCAGCATTCTCCAGGCT-GGGCCT---GGAGGCTGTG--AGGA---CCCCTGAGAAGCTAAGATATG-AGGAC--TTTTTATATTTGGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108409945 233 - 171882078 ---GAACAGCAAAAACCAAA-TCATTCCC-TCTCAGAAAGGAACTC---AGTCATCATAGGTGGGTCCAAGAGGATG-AGCAGCCTCTGAAGAAGTAATAAG-CCAAGAATTGCAGGAGAAGCTGAGAA-CAAGTGGCTTCTG------CTGGCCCATGAGCAGCTGTGCCTCCAGCATTCTCCAGGCT-GGGCCT---GGAGGCTGTG--AGGA---CCCCTGAGAAGCTAAGATGTG-AGGAC--TTTTTATATTTGGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        20387 233 -   2311642 ---GAACAGCAAAAACCAAA-TCATTCCC-TCTCAGAAAGGAACTC---AGTCATCATAGGTGGGTCCAAGAGGATG-AGCAGCCTCTGAAGAAGTAATAAG-CCAAGAATTGCAAGAGAAGCTGAGAA-CAAGTGGCTTCTG------CTGGCCCATGAGCAGCTGTGCCTCCAGCATTCTCCAGGCT-GGGCCT---GGAGGCTGTG--AGGA---CCCCTGAGAAGCTAAGATGTG-AGGAC--TTTTTATATTTGGGC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        18551 233 -   1987038 ---GAACAGCAAACGCCAAA-TCATTCCC-TCTCAGAAAGGAATTC---GGTCATCATAGGTGGGTCCAAGAGGATG-AGCAGCCTCTGAAGAAGTAATAAG-CCAAAAATTGCAGGAGAAGCTGAGAA-CAAGTGGCTTCTG------CTGGCCCATGAGCAGCTGTGCCTCCAGCATTCTCCAGGCT-GGGCCT---GGAGGCTGTG--AGGA---CCCCTGAGAAGCTAAGATGTG-AGGAC--TTTTTATATTTGGGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21099089 233 -  24206276 ---GAACAGCAAAAACCAAA-TCATTCCC-TCTCAGAAAGGAACTG---GGTCATCATAGGTGGGTCCAAGAGGATG-AGCAGCCTCTGAAGAAGTGGTAAG-CCAAGAATTGCAGGAGAAGCTGAGAA-CAAGTGGCTTCTG------CTGGCCCATGAGCAGCTGTGCCTCCAGCATTCTCCAGGCT-GGGCCT---GGAGGCTGTG--AGGA---CCCCTGAGAAGCTAAGATGTG-AGGAC--TTTTTATATTTGGGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        14272 233 -   1397330 ---GAACAGCAAACGCCAAA-TCATTCCC-TCTCAGAAAGGAATTC---GGTCATCATAGGTGGGTCCAAGAGGATG-AGCAGCCTCTGAAGAAGTAATAAG-CCAAAAATTGCAGGAGAAGCTGAGAA-CAAGTGGCTTCTG------CTGGCCCATGAGCAGCTGTGCCTCCAGCATTCTCCAGGCT-GGGCCT---GGAGGCTGTG--AAGA---CCCCTGAGAAGCTAAGATGTG-AGGAC--TTTTTATATTTGGGC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        37551 233 -   1784207 ---GAACAGCAAAAACCAAA-TCACTCCC-TCTCAGAAAGGAACTG---GGTCATCATAGGTGGGTACAAGAGGATG-AGCAGCCTCTGAAGAAGTAATAGG-CCAAGGCTTGCAGGAGAAGCTGAGAA-CAAGTGGCTTCTC------CTGGCCCATGAGCAGCTGTGCCTCCAGCATTCTCCAGGCT-GGGCCT---GGAGGCTGTG--AGGA---CCCCTGAGAAGCTTAGATGTG-AGGAC--TTTTTATATTTGGAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22234531 233 + 158406734 ---GAACTGCAAAATCCCAA-TCACTTCC-TCTCAGAAAGGAACTG---GGTGATCATAGGTGGGTAGAAGAGGATG-TGCAGCCTCCCAAGAAGAAATAGG-CCAAGGCTTGCAGGAGAAGCTGTGAA-CAAGTGGCTTCTA------CTGGCACGTGAGCAGCTGCGCCTCCCGCATTCTCCAAGCT-GGGTCT---GGAGGCTGCA--AGGA---CCCCGGAGAAGCTAAGATGTG-AGGAC--TTTTTGTATTTGGGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50470289 229 +  54856640 ---GAACTGCAAAATCCCAA-TCACTTCC-TCTCAGAAAGGAACTG---GGTGATCATTGGTGGGTAGAAGAGGATG-TGCAGCCTCCTAAG----AATAGG-CCAAGGCTTGCAGGAGAAGCTGTGAA-CAAGTGGCTTCTA------CTGGCACGTGAGCAGCTGCACCTCCAGCATTCTCCAAGCT-GGGTCT---GGAGGCTGCG--AGGA---CCCCCGAGAAGCTAAGATGTG-AGGAC--TTTTTGTATTTGGGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       613942 233 -   2910086 ---GAACTGCAAAATCCCAA-TCACTTCC-TCTCAGAAAGGAACTG---GGTGATCATAGGTGGGCAGAAGAGGATG-TGCGGCCTCCCAAGAAGTAATAGG-CCAAGGCTTGCAGGAGAACCTGTGAA-CAAGTGGCTTCTA------CTGGCACGTGAGCAGCTGCCCCTCCAGCATTCTCCAAGCT-GGGTCT---GGAGGCTGCG--AGGA---CCCCTGAGAAGCTAAGATGTG-AGGAC--TTTTTGTATTTGGGC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40641488 235 +  42888418 ---GAATGGCAAAATCCAAA-TCACTTCC-TCTCAGAAAGGAACTC---GGTGATCACAGGTGGGTAGAAGAGGATGTTGCAGCCTCC-AAGAAGTAACAGG-CCGAGGCTTGCAGGAGAAGCTGTGAACCAAGTGGCTTCTA------CTGGCATGTGAGCAGCTGCGCCTCCAGCAT--TTCAAGCT-GGGTCT---GGAGGCTGCG--AGGACCCCCCCCGTGAAGCTAAGATGTA-GGACT--TTTTTGTATTTGGGC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113266345 238 + 116334831 ---GAATAGCAAAAAGCAAA-TTACTCTC-TCTCAGAAAGGAACTG---GGTCAGCACAGGTCAGTCCAAACGGATT-GGAAGCCTCCCAAGAAGAAACAGA-CCAAAGCTTCCAGGAAAAGCCGAGAA-CAAGTGGCTTCTGCGGACAGTGACACCTGAGCAGA-ATGCTTCCAGCATTCTGCAAGCT-GGACCT---GGAGGCTGTG--AGGA---GCTCCAAGAAGCTTAAATGTG-AGGGC--TTTTTATACCTGGGC
i micMur3.chr9              I 85 C 0
s proCoq1.NW_012142813v1        11313 239 +     80520 ---GAATAGCAAAAAGCAAA-TTGCTCCC-TCTCAGAAAAGAACTG---GGTCAGCACACGTCAGTCCAAGAGGATG-AGAAGCCTCCCAAGAAGAAACACA-CCAAGGCTTCCAGGAAAAGCTGAGAA-CAAGTGGCTTCTGCAGACAGTGACACCGGAGCATCTGTGCTTCCAGCATTCTGCAAGCT-GGACCT---GGAGGCTGTG--AGGA---GCCCCAAAAAGCTTAAATGTG-AGGGC--TTTTTATACTTGGGC
i proCoq1.NW_012142813v1    I 3 C 0
s otoGar3.GL873530             628661 227 -  36342412 ---GAAGAGCAAAAAGC-------CTTCC-TCATACAAAGAAACTGGGTGGTCAGCACAGGTGAGTCCAAGAGGCTG-AGAAGCCTCTCAAGAAGAAACAAG-CCAAAGCTTCCAGGAGAAGCTGAGAA-CAA---GCCTCTGGG----CTGGTCCCGGAGCAGCTGTGC--CCAGTATCCTGTATTCCAGGGCCT---GGAGGCTGGG--CAGA---GCCTCCAGAAGGTCACATGTG-GAGGC--TTTTGGAAGGTGGG-
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81346597 217 + 145441459 ---gaatcaaaaaagcaaaa-TAGTAACC-ACTCAGAAAGGAATTA---CATCAGCACAAGTGTGTCCAAGAGGAAG---------------GAGGAACACG-TCAGGGCTCACAGGA-AAGCAGCCAG-CAAATGGCTC---------CTGACATCTTGGGAGTTGTGCCTCTAGCATTCCTAGGGCT-CCATGTGGAGGAGGCCTTG--AGGG---GCC--AAGAAG-TAAAATGTA-CAGGCAGGCCTCCTATTCTGAT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54404762 180 +  91889043 ---GAACAGTAGAAAGTAAG-TTTCTCCC-TCTCAG-AAGGAACTG---GGTCAGCATAGG-----------------GTCAGCCTCCCCAGAAAT--TAGC-CTGAGGCCTCAAGGAGCAGCTGAGAA-CCAGTGGC-----------CCG-------AGGAGCTGTGCCTCTGGT-TTCTCCAAGCT-GCGTCT---GG-GACTTTG--AGAA-----------------------G-AGGGC--TCTTTATGCTTGGAC
i canFam3.chr3              I 3 C 0
s dasNov3.JH570731            1794496 227 +   3943991 GAGGAAGAGCAAAAAAATAACTTGCTCCCTTCTCAGGAAAGAACTG---GGTCA-----GGTGATGTGGAGAGAATG-AGAAGTCCCTAAACAAGAATCCGGCCCAAGGCTTACAGAAGA-----TGAA-CAAGTGGCTCCTG------CTGAAGCCTGAGCTGTTATGCCTCT-GTGTTCTCCAGGCT-GGGAAT---GGAGGTTGTGAAAGGG---GCATCAAAAAGCT----TGTGCAGGGC--TTTTTCCACTTGGGA
i dasNov3.JH570731          C 0 I 231

a score=192925.000000
s hg38.chr15_KI270850v1_alt    332079 13 +    430880 TAGAAGCACCCAT
s panTro5.chr15              63485495 13 +  83230942 TAGAAGCACCCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80442870 13 +  99763055 TAGAAGCACCCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        42754 13 -   1709092 TAGAAGCACCCAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17195249 13 - 121039945 TAGAAGTACCCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60883475 13 + 169600520 TAGAAGCACCCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108410178 13 - 171882078 TAGAAGCACCCAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        20620 13 -   2311642 TAGAAGCACCCAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        18784 13 -   1987038 TAGAAGCACCCAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21099322 13 -  24206276 TAGAAGCACCCAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        14505 13 -   1397330 TAGAAGCACCCAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        37784 13 -   1784207 TAGAAGCACCCAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22234764 13 + 158406734 TAGAAGCACCCAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50470518 13 +  54856640 TAGAAGCACCCAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       614175 13 -   2910086 TAGAAGCACCCAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40641723 13 +  42888418 TAGAAGCACCCAC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113266583 13 + 116334831 TAGAAGCACCCAC
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        11552 13 +     80520 TAGAAGCATCCAC
i proCoq1.NW_012142813v1    C 0 C 0
s mm10.chr7                  81346814 13 + 145441459 TGTAATCACCCAG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54404942 12 +  91889043 TAAAGGTACCCA-
i canFam3.chr3              C 0 C 0
e dasNov3.JH570731            1794723 231 +   3943991 I
e otoGar3.GL873530             628888  0 -  36342412 C

a score=1602419.000000
s hg38.chr15_KI270850v1_alt    332092 118 +    430880 CCACTGGAGAAGCATCTCCA-AAGTATATTTGACGATGGAAGGGACCAAGAAGTA------CTCACA---GGG-CAGGTCTCCCACATGGTCCCACCATTA-TCCTGGGCCAGGATCTCCATCACAG-AAA
s panTro5.chr15              63485508 117 +  83230942 CCACTGGAGAAGCATCTCCA-AAGTATATTTGACGATGGAAGGGACCAAGAAGTA------CTCACA---GGG-CAGGTCTCCCACATGGTCCCACCATTA-TCCTGGGCCAGGATC-CCATCACAG-AAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80442883 117 +  99763055 CCACTGGAGAAGCATCTCCA-AAGTATATTTGACGATGGAAGGGACCAAGAAGTA------CTCACA---GGG-CAGGTCTCCCACATGGTCCCACCATTA-TCCTGGGCCAGGATC-CCATCACAG-AAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        42767 117 -   1709092 CCACTGGAGAAGCATCTCCA-AAGTATATTTGACGATGGAAGGGACCAAGAAGTA------CTCACA---GGG-CAGGTCTCCCACATGGTCCCACCATTA-TCCTGGGCCAGGATC-CCATCACAG-AAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17195262 117 - 121039945 CCACTGGAGAGGCATCTCCA-AAGTATATTTGATGATGGAAGGGACCAAGAAGTA------CTCACA---GGG-CAGGTCTCCCACACAGTCCCACCATTA-TCCTGGGCCAGGATC-CCATCACAG-AAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60883488 117 + 169600520 CCACTGGAGAGGCATCTCCA-AAATGTATTTGATGATAGAAAGGACCAAGAAGTA------CTCACA---GGG-CAGGTCTCCCACATGGTCCCACTATTA-TCCTGGGCCGGGATC-CCATCACAG-AAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108410191 117 - 171882078 CCACTGGAGAGGCATCTCCA-AAATGTATTTGATGATAGAAAGGACCAAGAAGTA------CTCACA---GGG-CAGGTCTCCCACATGGTCCCACTATTA-TCCTGGGCCGGGATC-CCATCACAG-AAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        20633 117 -   2311642 CCACTGGAGAGGCATCTCCA-AAATGTATTTGATGATAGAAAGGACCAAGAAGTA------CTCACA---GGG-CAGGTCTCCCACATGGTCCCACTATTA-TCCTGGGCCGGGATC-CCATCACAG-AAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        18797 117 -   1987038 CCACTGGAGAGGCATCTCCA-AAATGTATTTGATGGTAGAAAGGACCAAGAAGTA------CTCACA---GGG-CAGGTCTCCCACATGGTCCCACTATTA-TCCTGGGCCGGGATC-CCATCACAG-AAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21099335 117 -  24206276 CCACTGGAGAGGCATCTCCA-AAATGTATTTGATGATAGAAAGGACCAAGAAGTA------CTCACA---GGG-CAGGTCTCCCACATGGTCCCACTATTA-TCCTGGGCCGGGATC-CCATCACAG-AAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        14518 117 -   1397330 CCACTGGAGAGGCATCTCCA-AAATGTATTTGATGGTAGAAAGGACCAAGAAGTA------CTCACA---GGG-CAGGTCTCCCACATGGTCCCACTATTA-TCCTGGGCCGGGATC-CCATCACAG-AAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        37797 117 -   1784207 CCACTGGAGAGGCATCTCCA-AAATGTATTTGATGATGGAAAGGACCAAGAAGTA------CTCACA---GGG-CAGGTCTCCCATATGGTCCCACTATTA-TCCTGGGCCGGGATC-CCATCACAG-AAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22234777 116 + 158406734 CCACTGGAAAGGCATCTCCA-ACGTATAATTGACCATGGAAGGGACCAA--AGTA------CTCACA---AGG-CAGGTCTCCCACATGGTCACACTACTA-TCCTGGTCCAGGATC-CCATCAGAGAAAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50470531 118 +  54856640 CCACTGGAGAGGCATCTCCA-AAGTGTAACTGACCATGGAAAGGACCAAGTAGTA------CTCACA---AGG-CAGGTCTCCCACATGGTCACACCGTTA-TCCTGCTCCAGGATC-CCATCAAAGAAAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       614188 118 -   2910086 CCACTGGAGAGGCATCTCCA-AAGTATAGCTGACCATGGAAGGGACCAAGAAGTA------CTCACA---AGC-CAGGTCTCCCACATGGTCACACCATTA-TCCTGTTCCAGGATC-CCATGACAGAAAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40641736 118 +  42888418 CCACTGGAGAGGCATCTCCA-AAGTATAACTGACCATGGAAGGACCAAGAAAGTA------CTCACA---AGG-CAGGTCTTCCACATGGTCACACCATTA-TCCTGGTCCAGGGTC-CCATCACAGAAAA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113266596 118 + 116334831 CCACTGGAGAGTCATCTCCAGAAGTGCATTTGACCATGGAAGTGACCAAAAAGTA------CTGACA---GGGACAGATCTCCCACATGATCCCA--ATTATTCCTGGGCTGGAATC-CTATCACAG-AAA
i micMur3.chr9              C 0 I 35
s proCoq1.NW_012142813v1        11565 118 +     80520 CCACTGGAGAGCCATCTCCAGAAGTGCATTTGACCATGGAAGTGACCAAAAAGTA------CTCACA---AGGACAAATCTCCCATATGATCCCA--ATTATTCCTGGGCTGGAATC-CCATCACAG-AAA
i proCoq1.NW_012142813v1    C 0 I 49
s otoGar3.GL873530             628888 117 -  36342412 ---CTGTAGTGCCATCTTCTAAAGTACATTTGGTGTTAGAAGTGACCAGAAAGTA------CTCACA---GGGACAGGTCTCCTTTAACACCCCACCATTATTCCTGGCCTGGAATC-CCATTGTAG-AAA
i otoGar3.GL873530          C 0 I 1
s mm10.chr7                  81346827 106 + 145441459 GTACTAGACA-----CTCCA-GAGTGGCT--------------GACCAGGATGTAACAAGTCCCATATAGGAG-CAGGTCT-CCGCATGTACCTCCCATCC-CTCTGGGCTGGTATC-CCATTAGTG-AAA
i mm10.chr7                 C 0 I 1
s canFam3.chr3               54404954 101 +  91889043 ------------CAACTCCA-AGGTGCATCTGAGCACCGAAGTGAGCAAGTAATA------C---AG---GGG-CAGATCTCCC-CACGGCCCCACCGCCA-ACCTGGGCTGGAATC-CCATCACAG-AGA
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1794954 107 +   3943991 CCACTGGAGAAAAATCTCCA-AAATTCCTGTGACCATGGAAATGACTAAGA--CA-----------G---GGA-CAGGTCTCCCACATGGCCCCA---TCA-CACTAGGCTGGAATG-TTACCACAG-AAA
i dasNov3.JH570731          I 231 I 1

a score=314171.000000
s hg38.chr15_KI270850v1_alt    332210 29 +    430880 TCCAAGGAA--ACA--AGCTGTGGCTGTGCCAT
s panTro5.chr15              63485625 29 +  83230942 TCCAAGGAA--ACA--AGCTGTGGCTGTGCCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80443000 29 +  99763055 TCCAAGGAA--ACA--AGCTGTGGCTGTGCCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        42884 29 -   1709092 TCCAAGGAA--ACA--AGCTGTGGCTGTGCCAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17195379 29 - 121039945 TTCAAGGAA--ACA--AGCTGTGGCTGTGCCAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60883605 29 + 169600520 TCCAAGGAA--ACA--AGCTACGGCTGCGCCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108410308 29 - 171882078 TCCAAGGAA--ACA--AGCTACGGCTGCGCCAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        20750 29 -   2311642 TCCAAGGAA--ACA--AGCTACGGCTGCGCCAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        18914 29 -   1987038 TCCAAGGAA--ACA--AGCTACGGCTGCGCCAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21099452 29 -  24206276 TCCAAGGAA--ACA--AGCTACGGCTGCACCAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        14635 29 -   1397330 CCCAAGGAA--ACA--AGCTACGGCTGCGCCAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        37914 29 -   1784207 TCCAAGGAA--ACA--AGCTACGGCTGCGCCAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22234893 29 + 158406734 TCCAAGGAA--ACA--AGCTGTGGCTGCACGAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50470649 29 +  54856640 TCCAAGGAA--ACA--AGCTGTGGCTGTGCCAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       614306 29 -   2910086 TCCAAGGAA--ACA--AGCTGCGGCTGCGCCAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40641854 29 +  42888418 TCCAAGGAA--ACA--AGCTGTGGCTGCGCCAT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             629006 28 -  36342412 TTCAAGGAG--AGA--AGTTGTTAGT-CGAAAT
i otoGar3.GL873530          I 1 I 6
s mm10.chr7                  81346934 29 + 145441459 TCCATGAAA--AGA--GGACTGGTCTCTGGAAT
i mm10.chr7                 I 1 C 0
s canFam3.chr3               54405056 26 +  91889043 TCAAAGGAAACACA--AATTTTTGCTCT-----
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1795062 31 +   3943991 TCCAAGCAA--ACATTAGCTCTTAGTCTGGAAA
i dasNov3.JH570731          I 1 C 0
e micMur3.chr9              113266714 35 + 116334831 I
e proCoq1.NW_012142813v1        11683 49 +     80520 I

a score=161646.000000
s hg38.chr15_KI270850v1_alt    332239 26 +    430880 TACCCCCTTACTCCCTCCCGTTAGCC
s panTro5.chr15              63485654 26 +  83230942 TACCCCCTTACTCCCTCCCATTAGCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80443029 26 +  99763055 TACCCCCTTACTCCCTCCCATTAGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        42913 26 -   1709092 TACCCCCTTACTCCCTCCCATTAGCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17195408 25 - 121039945 TACCCCCTTACTCCC-CATGTTAGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60883634 23 + 169600520 TACTCCCTTACTCCC---CATTAGAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108410337 23 - 171882078 TACTCCCTTACTCCC---CATTAGAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        20779 23 -   2311642 TACTCCCTTACTCCC---CATTAGCC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        18943 23 -   1987038 TACTCCCTTACTCCC---CATTAGCC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21099481 23 -  24206276 TACTCCCTTACTCCC---CATTAGCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        14664 23 -   1397330 TACTCCCTTACTCCC---CATTAGCC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        37943 23 -   1784207 TACTCCCTTACTCCC---TGTTAGCC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22234922 22 + 158406734 TACCCTCTTATTCCC----GACAGCC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50470678 24 +  54856640 TACCCTCCTATTCCC--CTGTCAGCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       614335 24 -   2910086 TACCCTCTTATTCCC--CTGTCAGCC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40641883 22 +  42888418 TACCCTCTTATTCCC---TGTCAG-C
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113266749 15 + 116334831 TACCCCATTACCCCC-----------
i micMur3.chr9              I 35 C 0
s otoGar3.GL873530             629040 15 -  36342412 AACCCCTTCACCCCC-----------
i otoGar3.GL873530          I 6 C 0
s mm10.chr7                  81346963 21 + 145441459 --CTTCCCTGCTTGC---TACCACAC
i mm10.chr7                 C 0 I 2
s canFam3.chr3               54405082 16 +  91889043 TATCACCCTACTTGC---C-------
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1795093 20 +   3943991 --TCTTATTACTCCCATTTATT----
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        11683 49 +     80520 I

a score=28841281.000000
s hg38.chr15_KI270850v1_alt    332265 1572 +    430880 CCTTGCTCCCAGACCTCAAACACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACGTCAGCTCAGCAG---GAGGGAGGGG----------TTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTAG-TTTTTGTGGGTTTTTTGTTT-------CTTTTTaaaaaaaaaaaaaaaaaaaaaaaggaaagaa--aaaaaaGTCAAGTTTT-CAAATTCCAGTGGCATTTCAGTCAACTGCAACTGTTATCTCATACATTCCTCAAATTAAAGATATAAGGGAAGGG-TACTTGCCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACCGAAAAGCAGCCC----------TTTTT-------------------AGCTCAGTTAC--AAAAGAAAAAAGTCCTGTGACTTTGTGA-TTAAAAACTTCTATCAACCCCACCCCCCC-ACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTT-AAAACTATATACAGCAGCCGCTC-AAACACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAA-AAT--TTTTTTTTTCTTGGTTGCAAATGCCTTGA-TTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATATCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTC-AGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGT-AAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTGTCAATACCTCAATACCTTCTGGACAC-GTA--Gtt----t---ttttttt---------------ttttttttttttCCCCGCTTTTCATCTGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTAAGCCAGAGGGTCCTTGCCCTTGGTACACCCC-CTGAAAACAAAACCTGACAAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTTGGGAAGCC----AGCTCCCTGGTCGCCAGTGGCAGGGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTTGGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAG-AAGTATTTGAAGCAGACCTGGGTTGGGGGAACAAAAAGGAG--G-ATGCC
s panTro5.chr15              63485680 1574 +  83230942 CCTTGCTCCCAGACCTCAAACACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACGTCAGCTCAGCAG---GAGGGAGGGG----------TTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTAG-TTTTTGTGGGTTTTTTCTTTT----TTCTTTTTTTaaaaaaaaaaaaaaag-----ggaaagaa--aaaaaaGTCAAGTTTT-CAAATTCCAGTGGCATTTCAGTCAACTGCAACTGTTATCTCATACATTCCTCAAATTAAAGATACAAGGGAAGGG-TACTTGCCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACCGAAAAGCAGCCC----------TTTTT-------------------AGCTCAGTTAC--AAAAGAAAAAAGTCCTGTGACTTTGTGA-TTAAAAACTTCTATCAACCCCACCCCCCCCACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTT-AAAACTATATACAGCAGCCGCTC-AAACACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAA-ATA--TTTTTTTTTCTTGGTTGCAAATGCCTTGA-TTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATATCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTC-AGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGT-AAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTGTCAATACCTCAATACCTTCTGGACAC-GTA--Gtt----c---tttttttct------------ttttttttttttttCCCGCTTTTCATCTGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTAAGCCAGAGGGTCCTTGCCCTTGGTATACCCC-CTGAAAACAAAACCTGACAAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTTGGGAAGCC----AGCTCCCTGGTCGCCAGTGGCAGGGTGGTGCAGGCTGTTTGCCTGACCTGCCAGCTTTGGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAG-AAGTATTTGAAGCAGACCTGGGTTGGGGGAACAAAAAGGAG--G-ATGCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80443055 1550 +  99763055 CCTTGCTCCCAGACCTCAAACACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACGTCAGCTCAGCAG---GAGGGAGGGG----------TTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTAG-TTTTTGTGGGttttttctttt----tttttttt-----aaaaaaaaaaaag-----ggaaagaa--aaaaaaGTCAAGTTTT-CAA-----------ATTTCAGTCAACTGCAACTGTTATCTCATACATTCCTCAAATTAAAGATACAAGGGAAGGG-TACTTGCCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACCGAAAAGCAGCCC----------TTTTT-------------------AGCTCAGTTAC--AAAAGAAAAAAGTCCTGTGACTTTGTGA-TTAAAAACTTCTATCAACCCCACCCCCCC-ACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTT-AAAACTATATACAGCAGCCGCTC-AAACACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAA-ATA---TTTTTTTTCTTGGTTGCAAATGCCTTGA-TTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAGGAAAG------AAAAATATCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTC-AGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGT-AAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTGTCAATACCTCAATACCTTCTGGACAC-GTA--GTT----C---TTTTT-----------------TTCTTTTTTTTTTCCCGCTTTTCATCTGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTAAGCCAGAGGGTCCTTGCCCTTGGTATACCCC-CTGAAAACAAAACCTGACAAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTTGGGAAGCC----AGCTCCCTGGTCGCCAGTGGCAGGGTGGTGCAGGCTGTTTGCCTGACCTGCCAGCTTTGGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAG-AAGTATTTGAAGCAGACCTGGGTTGGGGGAACAAAAAGGAG--G-ATGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        42939 1575 -   1709092 CCTTGCTCCCAGACCTCAAACACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACGTCAGCTCAGCAG---GAGGGAGGGG----------TTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTAG-TTTTTGTGGGTTTTTTGTTT-------CTTTTTTaaaaaaaaaaaaaaaaaaaaaggaaagaaa--aaaaaaGTCAAGTTTT-CAAATTCCAGTGGCATTTCAGTCAACTGCAACTGTTATCTCATACATTCCTCAAATTAAAGATATAAGGGAAGGG-TACTTGCCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACCGAAAAGCAGCCC----------TTTTT-------------------AGCTCAGTTAC--AAAAGAAAAAAGTCCTGTGACTTTGTGA-TTAAAAACTTCTATCAACCCCACCCCCCCCACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTTAAAAACTATATACAGCAGCCGCTC-AAACACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAA-ATA--TTTTTTTTTCTTGGTTGCAAATGCCTTGA-TTTGCAACTGTGAGAAACAGTGACCAGCAGT-CCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATATCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAATCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTC-AGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGT-AAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTGTCAATACCTCAATACCTTCTGGACAC-GTA--Gtt----c---ttttttttt-------------tttttttttttttCCCGCTTTTCATCTGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTAAGCCAAAGGGTCCTTGCCCTTGGTATACCCC-CTGAAAACAAAACCTGACAAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTCGGGAAGCC----AGCTCCCTGGTCGCCAGTGGCAGGGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTCGGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAG-AAATATTTGAAGCAGACCTGGGTTGGGGGAACAAAAAGGAG--G-ATGCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17195433 1584 - 121039945 CCTTGCTCCCAGACCTCAAACACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACGTCAGCTCAGCAG---GAGGGAGGGG----------TTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTAG-TTTTTGTGGGttttttttttttgtattttttttaaaaaaaaaaaaaaaaaa-----ggaaagaaagaaaaaaGTCAAGTTTT-CAAATTCCAGTGGCATTTCCGTCAACTGCAACTGTTATCTCATACATTCCTCAAATTAAAGATATAAGGGAAGGG-TACTTGCCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACTGAAAAGCAGCCC----------TTTTT-------------------AGCTCAGTTAC--AAAAGAAAAAAGTCCTGTGACTTTGTGA-TTAAAAACTTCTATCAACCCCACCCCCCCCACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTT-AAAACTATATACAGCAGCTGCTC-AAACACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAA-ACA--TTTTTTTTTCTTGGTTGCAAATGCCTTGA-TTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATATCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTC-AGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACCAATGAGACCTGCGCATCACCACCATCAGTATTGCAAGGAATGT-AAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTGTCAATACCTCAATACCTTCTGGACAC-GTA--Gtt----t---ttttttttt-------ttttttttttttttttttttCCGCTTTTCATCTGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTAAGCCAGAGGGTCCTTGCCCTTGGTATACCCC-C-GAAAACAAAACCCGACAAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AACTTTCCCTTGTCCTCGGGAAGCC----AGCTCCCTGGTCGCCAGTGGCAGGGTGGTGCAAGCTGCTTGCCTGACCTGCCAGCTTCGGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAG-AAGTATTTGAAGCAGACCTGGGTTGGGGGAACAAAAAGGAG--G-ATGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60883657 1542 + 169600520 CCCTGCTCCCAGACCTCAAACACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACATCAGCTCAGCAG---GAGGGAGGGG----------TTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTAG-TTTTTGT--GTTTTCTTTTTC--------------------AAAAAAAAAA-----GGAAAG----AAAAAAGTCAAGTTTT-CAAATTCCAGTAGCATTTCAGTCAACTGCAACTGTTATCTCATACATTCCTCAAATTAAAGATAT-----AAGGG-TACTTGTCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACTGAAAAGCAGCCC----------TTTTT-------------------AGCTCAGTTAC--AAAAGAAAAAAGTCCTGTGACTTTGTGA-TTAAAAACTTCTATCAACCCCACCCCCCC-ACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTT-AAAACTATATACAGCAGCCGCTC-AAACACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAA-ACA--TTTTTTTTTCTTGGTTGCAAATGCCTTGA-TTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTGGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATATCTTGTTCCAAACGACTTAAAAACTGTTTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTC-AGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGT-AAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTGTAAATACCTCAATACCTTCTGGACAC-GTA---------G---TTCTTT----------------TTTTTTTTTTTTCCCCGCTTTTCATCTGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTAAGCCAGAGAGTCCTTGCCCCTGGCATACCCC-CTGAAAACAAAACCCGACAAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTCGGGAAGCC----AGCTCCCTGGTCGCCAATGGCAGGGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTCAGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAG-AAGTATTTGAAACAGACCTGGGTTGAGGGAACAAAAAGGAG--G-ATGCC
i rheMac8.chr7              C 0 I 3
s macFas5.chr7              108410360 1548 - 171882078 CCCTGCTCCCAGACCTCAAACACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACATCAGCTCAGCAG---GAGGGAGGGG----------TTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTAG-TTTTTGT--GTTTTCTTTTTC---------------------AAAAAAAAA-----GGAAAG----AAAAAAGTCAAGTTTT-CAAATTCCAGTAGCATTTCAGTCAACTGCAACTGTTATCTCATACATTCCTCAAATTAAAGATATAAGGGAAGGG-TACTTGTCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACTGAAAAGCAGCCC----------TTTTT-------------------AGCTCAGTTAC--AAAAGAAAAAAGTCCTGTGACTTTGTGA-TTAAAAACTTCTATCAACCCCACCCCCCC-ACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTT-AAAACTATATACAGCAGCCGCTC-AAACACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAA-ACT--TTTTTTTTTCTTGGTTGCAAATGCCTTGA-TTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTGGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATATCTTGTTCCAAACGACTTAAAAACTGTTTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTC-AGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGT-AAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTGTAAATACCTCAATACCTTCCGGACCC-GTA---tt----t---cttttt----------------ttttttttttttCCCCGCTTTTCATCTGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTAAGCCAGAGAGTCCTTGCCCCTGGCATACCCC-CTGAAAACAAAACCCGACAAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTCGGGAAGCC----AGCTCCCTGGTCGCCAATGGCAGGGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTCAGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAG-AAGTATTTGAAGCAGACCTGGGTTGAGGGAACAAAAAGGAG--G-ATGCC
i macFas5.chr7              C 0 I 3
s macNem1.NW_012011945v1        20802 1552 -   2311642 CCCTGCTCCCAGACCTCAAACACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACATCAGCTCAGCAG---GAGGGAGGGG----------TTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTAG-TTTTTGT--GTTTTCTTTTTC---------------------AAAAAAAAA-----GGAAAG----AAAAAAGTCAAGTTTT-CAAATTCCAGTAGCATTTCAGTCAACTGCAACTGTTATCTCATACATTCCTCAAATTAAAGATATAAGGGAAGGG-TACTTGTCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACTGAAAAGCAGCCC----------TTTTT-------------------AGCTCAGTTAC--AAAAGAAAAAAGTCCTGTGACTTTGTGATTTAAAAACTTCTATCAACCCCACCCCCCC-ACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTT-AAAACTATATACAGCAGCCGCTC-AAACACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAA-ACA--TTTTTTTTTCTTGGTTGCAAATGCCTTGA-TTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTGGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATATCTTGTTCCAAACGACTTAAAAACTGTTTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTC-AGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGT-AAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTGTAAATACCTCAATACCTTCTGGACAC-GTAGtttt----t---tttttt----------------ttttttttttttCCCCGCTTTTCATCTGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTAAGCCAGAGAGTCCTTGCCCCTGGCATACCCC-CTGAAAACAAAACCCGACAAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTCGGGAAGCC----AGCTCCCTGGTCGCCAATGGCAGGGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTCAGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAG-AAGTATTTGAAGCAGACCTGGGTTGAGGGAACAAAAAGGAG--G-ATGCC
i macNem1.NW_012011945v1    C 0 I 3
s cerAty1.NW_012002657v1        18966 1548 -   1987038 CCCTGCTCCCAGACCTCAAACACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACATCAGCTCAGCAG---GAGGGAGGGG----------TTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTAG-TTTTTGT--GTTTTCTTTTTC---------------------AAAAAAAAA-----GGAAAG----AAAAAAGTCAAGTTTT-CAAATTCCAGTAGCATTTCAGTCAACTGCAACTGTTATCTCATACATTCCTCAAATTAAAGATATAAGGGAAGGG-TACTTGTCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACTGAAAAGCAGCCC----------TTTTT-------------------AGCTCAGTTAC--AAAAGAAAAAAGTCCTGTGACTTTGTGA-TTAAAAACTTCTATCAACCCCACCCCCCC-ACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTT-AAAACTATATACAGCAGCCGCTC-AAACACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAA-ACA--TTTTTTTTTCTTGGTTGCAAATGCCTTGA-TTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTGGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATATCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTC-AGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGT-AAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTGTAAATACCTCAATACCTTCTGGACAC-GTA--Gtt----t---tttttt----------------ttttttttttttttCCGCTTTTCATCTGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTAAGCCAGAGAGTCCTTGCCCCTGGCATACCCC-CTGAAAACAAAACCCGACAAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTCGGGAAGCC----AGCTCCCTGGTCGCCAATGGCAGGGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTCAGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAG-AAGTATTTGAAGCAGACCTGGGTTGAGGGAACAAAAAGGAG--G-ATGCC
i cerAty1.NW_012002657v1    C 0 I 3
s chlSab2.chr29              21099504 1550 -  24206276 CCCTGCTCCCAGACCTCAAACACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACATCAGCTCAGCAG---GAGGGAGGGG----------TTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTAG-TTTTTGT--GTTTTCTTTTTC-------------------AAAAAAAAAAA-----GGAAAG----AAAAAAGTCAAGTTTT-CAAATTCCAGTAGCATTTCAGTCAACTGCAACTGTTATCTCATACATTCCTCAAATTAAAGATATAAGGGAAGGG-TACTTGTCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACTGAAAAGCAGCCC----------TTTTT-------------------AGCTCAGTTAC--AAAAGAAAAAAGTCCTGTGACTTTGTGA-TTAAAAACTTCTATCAACCCCACCCCCCC-ACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTT-AAAACTATATACAGCAGCCGCTC-AAACACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAA-ACA--TTTTTTTTTCTTGGTTGCAAATGCCTTGA-TTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTGGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATATCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTC-AGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGT-AAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTGTAAATACCTCAATACCTTCTGGACAC-GTA--Gtt----c---tttttt----------------ttttttttttttttCCGCTTTTCATCTGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTAAGCCAGAGAGTCCTTGCCCCTGGCATACCCC-CTGAAAACAAAACCCGACAAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTCGGGAAGCC----AGCTCCCTGGTCGCCAATGGCAGGGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTCAGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAG-AAGTATTTGAAGCAGACCTGGGTTGAGGGAACAAAAAGGAG--G-ATGCC
i chlSab2.chr29             C 0 I 3
s manLeu1.NW_012106908v1        14687 1551 -   1397330 CCCTGCTCCCAGACCTGAAACACAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACATCAGCTCAGCAG---GAGGGAGGGG----------TTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTAG-TTTTTGT--GTTTTCTTTTTC---------------------AAAAAAAAA-----GGAAAG----AAAAAAGTCAAGTTTT-CAAATTCCAGTAGCATTTCAGTCAACTGCAACTGTTATCTCATACATTCCTCAAATTAAAGATATAAGGGAAGGG-TACTTGTCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACTGAAAAGCAGCCC----------TTTTT-------------------AGCTCAGTTAC--AAAAGAAAAAAGTCCTGTGACTTTGTGA-TTAAAAACTTCTATCAACCCCACCCCCCC-ACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTT-AAAACTATATACAGCAGCCGCTC-AAACACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAA-ACA--TTTTTTTTTCTTGGTTGCAAATGCCTTGA-TTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTGGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATATCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTC-AGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGT-AAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCTGTGTAAATACCTCAATACCTTCTGGACAC-GTA--Gtt----cttttttttt----------------ttttttttttttttCCGCTTTTCATCTGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTAAGCCAGAGAGTCCTTGCCCCTGGCATACCCC-CTGAAAACAAAACCCGACAAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTCGGGAAGCC----AGCTCCCTGGTCGCCAATGGCAGGGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTCAGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAG-AAGTATTTGAAGCAGACCTGGGTTGAGGGAACAAAAAGGAG--G-ATGCC
i manLeu1.NW_012106908v1    C 0 I 3
s colAng1.NW_012117110v1        37966 1545 -   1784207 CCCTGCTCCCAGACCTCAAACATAGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACATCAGCTCAGCAG---GAGGGAGGGG----------TTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTAG-TTTTTGT--GTTTTCTTTTTC------------------aaaaaaaaaaaa-----ggaaag----aaaaaaGTCAAGTTTT-CAAATTCCAGTAGCATTTCAGTCAACTGCAACTGTTAGCTCATACATTCCTCAAATTAAAGATATAAGGGAAGGG-TACTTGTCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACTGAAAAGCAGCCC----------TTTTT-------------------AGCTCAGTTAC--AAAAGAAAAAAGTCCTGTGACTTTGTGA-TTAAAAACTTCTATCAACCCCACCCCCCC-ACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTT-AAAACTATATACAGCAGCCGCTC-AAACACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAA-ACA--TTTTTTTTTCTTGGTTGCAAATGCCTTGA-TTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTGGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATATCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTATTGTTTACAGTAAAAAACACCAGCTGAACACTC-AGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGT-AAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCTGTGTAAATACCTCAATACCTTCTGGACAT-GTA--GTT----T-------------------------TTTTTTTTTTTCCCCCGCTTTTCATCTGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTAAGCCAGAGGGTCCTTGCCCCTGGCATACCCC-CTGAAAACAAAACCCGACAAAACTCAATGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTCGGGAAGCC----AGCTCCCTGGTCGCCAATGGCAGGGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTCAGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAG-AAGTATTTGAAGCAGACCTGGGTTGGGGGAACAAAAAGGAG--G-ATGCC
i colAng1.NW_012117110v1    C 0 I 3
s calJac3.chr6               22234944 1538 + 158406734 CCTTGCTCCCAGACCTCAAAC--AGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACATCAGCTCAGCAG---GAGGGAGGGG----------TTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTAG-TTTTTGT--TTTTTCTATTT--------------TTaaaaaaaaaaaaaaa-----ggaaagaaagaaaaaaGTCAAGTTTT-CAAATTCCAGTAGCATTTCAGTCAACTGCAACTGTTATCTCATACGTTCCTCAAATTAAAGATATAAAGGAAGGG-TACTTG-CCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACCAAAAAGCAGCCC----------TTTTT-------------------AGCTCAGTTAC--AAAAGAAAAAAGTCCTGTGACTTTGTGA-TTAAAAACTTCTATCAACCCCCCCCC----ACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTT-AAAACTATATACAACAGCCGCTC-AAACACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAA-AA-----TTTTTTTCTTGGTTGCAAATGCCTTGA-TTTGCAACTATCAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAGGAAAG----AAAAAAATCTCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTGTTGTTTACAGTAAAAAACACCAGCTGAACACTC-CGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGT--AAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTG--------TCAGCACTTTCTGGACAC-GTG--GTT----T---TTTTTTG---------------TTTGTTTGTTT-----GCTTTTCATCGGCAGAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGAAGGGTAAGCCAGAGGGTCCTTGCCCTTGGCACGCCCC-CTGAAAACAAAACCGGACAAAACTCATTGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTCGGGAAGCC----AGCTCCCTGGTCGCCAGTGGCAGGGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTTGGGCGCCACAGGCCACTGGGCAAGG-CAGCTCCTCTAGCTGGAATCTCTGTTCTTCTGGTTCCGCATCAGGGGGCTGTGATGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAA-AAGTACTTGAAGCAGACCTGGGATGGGAGAACAAAAAAAGG--AGATACC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50470702 1531 +  54856640 CCTTGCTCCCAGACCTCAAAC--AGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACATCAGCTCAGCAG---GAGGGAGGGG----------TTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTAG-TTTTTGT--TTTTTCTATTT-----------------aaaaaaaaaaaaaa-----agaaaga---aaaaaaGTCAAGTTTT-CAAATTCCAGTAGGATTTCAATCAACTGCAACAGTTATCTCATATGTTCCTCAAATTAAAGATATAAAGGAAGGG-TACTTG-CCCCCCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACCAAAAAGCAGCCC----------TTTTT-------------------AGCTCAGTTAC--AAAAGAAAAAAGTCCTGTGACTTTGTGA-TTAAAAACTTCTATCAACCCCCCCCCC-A-ACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTT-AAAACTATATACAACAGCCGCTC-AAACACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAATTT-----TTTTTTTCTTGGTTGCAAATACCTTGA-TTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATCTCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTGTTGTTTACAGTAAAAAACACCAGCTGAACACTC-AGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGT-AAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTG--------TCAATACTTTCTGGACAC-GTA--GTT----T---TTT-------------------TTTGTTTGTTT-----GCTTTTCATCGGCAAAATGAGAAACTAAAATCTGGGAAAACTACAGAGTCGCTTGAAGGGTAAGCCAAAGGGTCCTTGCCCTTGGCACGCCCC-CAGAAAACAAAACCCGACAAAACTCATTGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTCGGGAAGCC----AGCTCCCTGGTCGCCAGTGGCAGGGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTTGGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCTGTTCTTCTGGTTCCGCATCAGAGGGCTGTGATGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAG-AAGTACTTGAAGCAGACCTGGGTTGGGAGAACAAAACAAAG--A-ATGCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       614359 1537 -   2910086 CCTTGCTTCCAGACCTCAAAC--AGAGACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACATCAGCTCAGCAG---GAAGGAGGGG----------TTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTAG-TTTTTGT--TTTTTCTATTT-------------------aaaaaaaaaaaa-----ggaaagaaagaaaaaaGTCAAGTTTT-CAAATTCCAGTAGCATTTCAGTCAACTGCAACTGTTATCTCATAGGTTCCTCAAATTAAAGATATAAAGGAAGGG-TACTTG-CCCCCCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCTCACCAAAAAGCAGCCC----------TTTTT-------------------AGCTCAGTTAC--AAAAGAAAAAAGTCCTGTGACTTTGTGA-TTAAAAACTTCTATCAACCCCCCCCCC---ACATAAGTGCAACTTAAGGAGGTGCAATAAACCATTT-AAAACTATATACAACAGCCGCTC-AAACACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAA-AA-----TTTTTTTCTTGGTTGCAAATGCCTTGA-TTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATCTCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTGTTGTTTACAGTAAAAAACACCAGCTGAACACTC-AGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGT-AAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTG--------TCAATACTTTCTGGACAC-GTA--Gtttttgt---ttttttt---------------cttttttgttt-----gcttttCATCGGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGAAGGGTAAGCCAGAGAGTCCTTGCCCTTGGCACACCCC-CAGAAAACAAAACCCGACAAAACTCATTGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTCGGGAAGCC----AGCTCCCTGGTCGCCAGTGGCA-GGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTTGGGCGCCACAGGCCACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCTGTTCTTCTGGTTCCGCATCAGGGGGCTGTGATGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAG-AAGTACTTGAAGCAGACCTGGGTTGGGAGAACAAAACAAAG--G-ATGCC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40641905 1512 +  42888418 CCTTGCTCCCAGACCTCAAAC--AGAGACAAAACCAAGACTCTGCTGCAACGTGTTTATTATGTGCC--AAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACAT--GCTCAGCAG---GAGGGAGGGG----------TTATGACACTGGTTCTTTGGCACACAGCTTCCCTAGGAGGGGCAAGTAGTTTTTTTT--TTTTTCTATTTa-------------aaaaaaaaaaaaaaaaa-----ggcaaagaaagaagaaGTCAAGTTTTCCAAATTCCAGTAGCA-TTCAGTCAACTGCAACTTGT-TCTCATACGTTCCTCAAATTAAAGATATAAAGGAAGGGTTACTTG-CCCCCCT-AGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCAC-CAAAAAAGCAGCCC----------TTTTT-------------------AGCTCAGTTAC--AAAAGAAAAAAGTCCTGTGACTTTGTGA-TTTAAAACTTCTATCAACCCCCCCCGCCC-ACATAAGTGTAACTTAAGGAGGTGCAATTAAACCTTT-AAAACTATATACAACAGCCGCTC-AAACACCGTTTATCC-GTCCAGCTTCAAAATAAACAAAA-AA------TTTTTTCTTGGTTGCAAATGCCTTGATTTTGCAACTGTGAGAAACAGTGACCAGCAGT-CCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAGGAAAG-----AAAAAATCTCTTGTTCCAAACGACTTAAAAATGT-TTTTAAGGAGTGTAACAAAGGAACGGTAAAAA-CCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC--TGTTGTTTACAGTAAAAAACACCAGCTGAACACTCAAGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAAC-GCAAGAATGAA-----CAATGAGA-CTGCGCATCATCACCATCAGTATTGCAAGGAATGT--AAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTG--------TCAATAC-TTCTGGACAC-GT----TT----T---TTT-------------------TTTTGTTGTTT-----GCTTTTCATCGGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGAAGGGTAAGCCAGAGGGTCCTTGCCCTTGGCACGCCCC-CTGAAAACAAAACC-GACAAAACTCATTGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAG-GCAAAGGTGACTAC-AATTTTCCCTTGTCCTCGGGAAGCC----AGCTCCT---GTGCCAGTGGCAGGGTGGTGCAGGCTGCTTGCCTGACCTGCCAGCTTTGGGCGCCACAGGC--CTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCTGTTCTTC-GGTTCCGCATCAG-GGGCTGTGATGGCG-GCGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAGCAAGTACTTGAAGCAGACCTGGGTTGGG-GAACAAAAAAAGG----ATGCC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113266764 1522 + 116334831 -CTTGCTCCCAGACCTCAGACACAGAGACAAAACCACAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACGTCAGCTCAGCAGGA-GGGGGGTGGG----------TTATGACACTGGTTCTTTGGCACACAGCTTCCCTAAGAGGGGCAAGTAA-------------------TTa--------------aaaaaaaaaaaaagaa-----agatagaaaggaaaaaGTCAAGTTTT-CAAATTCCAGTAGCATTTCAGTCAACTGCAACTGTTGTTTCATACATTCCTCAAATGAAAAGCGTAAGGGATGGG-AACTTGCCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACC-AAAAGCAGCCC-------TTTTTTTT-------------------AGCTCAGTTAC--AAAAGAAAAAAGTCCTGTGACTTTGTGA-TTAAAAACTTCTGTCAA--CCCCCCCCTC-ACATAAGTGCAACTTAAGAAGGTGCAATAAATCATTT-AAAACTATATACAGCAGCCGCTC-AAACACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAA-ACAA-TTATTTTTTCTTGGTTGCAAATGCCTTCA-TTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAGGAAAG----AAAAAAATCTCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTGTTGTTTACAGTAAAAAACACCAGCTGAACACTC-AGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACCAATGAGACCTGCACATCATCACCATCAGTATTGCAAGGAATGTAAAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATCCGTG--------TCAATACCTTCTGGACAC-GTA--GTT----C--------------------------TTTTTTGCTT--------TTTCATCGGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTGCGCCAGAGGGTCCTTGCCC-TGGCACACCCC-CTGAAAACAAAACCCGACAAAACTCATTGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-GATTTTCCCTTGTCCTCGGGAAGCC----AGCTCCCTGGTCGCCAGTGGCAAGGTGGTACAGGCTGT-CGCCTGACCCGCCAGCTTTGGGCGCCACAGGCTGCTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCGATTCTTCTGGTTCCTCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAG-AAGTACTTGAAGCAGACCTGGGTTGGGGGAACAAAAAGGGG--G-ATGCC
i micMur3.chr9              C 0 I 91
s proCoq1.NW_012142813v1        11732 1530 +     80520 CTTTGCTCCCAGACCTTAGACACAGAGACAAAACCACAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACATCAGCTCAGCGGGAGGGGGGGTGGG----------TTATGACACTGGTTCTTTGGCACACAGCTTCCCTAAGAGGGGCAAGTAA------------------TTTa--------------aaaaaaaaaaaaaagg-----agaaagaaaggaaaaaGTCAAGTTTT-CAAATTCCAGTAGCATTTCAGTCAACTGCAACTGTTGTTTCATACATTCCTCAAATGAAAAGCGTAAGGGATGGG-TACTTGCCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACC-AAAAGCAGCCCTTTTTTTTTTTTTTT-------------------AGCTCAGTTAC--AAAAGAAAAAAGTCCTGTGACTTTGTGA-TTAAAAACTTCTATCA----CCCCCCCTC-ACATAAGTGCAACTTAAGAAGGTGCAATAAACCATTT-AAAACTATATACAGCAGCCGCTC-AAACACCGTTTATCCGGTCCAGTTTCAAATAAAACAAAA-ACAATTTTTTTTTTCTTGGTTGCAAATGCCTTGA-TTCGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAGGAAAG----AAAAAAATCTCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTGTTGTTTACAGTAAAAAACACCAGCTGAACACTC-AGTTTATGCCGTTCAGGTGGGGG-TAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACCAATGAGACCTGCACATCATCACCATCAGTATTGCAAGGAATGTAAAAAAAGCGC-TTTAATAAATAAACCTAGATGTAGGCATCCGTG--------TCAATACCTTCTGGACAC-GTA--GTT----C-------------------------TTTTTTTGCTT--------TTTCATCGGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTGAGCCAGAGGGTCCTTGCCC-TGGCACACCCC-CTGAAAACAAAACCCGACAAAACTCATTGTGCATTAGTTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-GAGTTTCCCTTGTCCTCGGGAAGCT----GGCTTCCTGGTCGCCAGTGGCAGGGTGGTGCAGGCTGC-TGCCTGACCTGCCAGCTTTGGGCGCCACAGGCTGCCGGGCGAGGCCAGCTCCTCTAGCTGGAATCTCGGTTCTTCTGGTTCCTCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAG-AAGTATTTGAAGCAGACCTGGGTTGGGGGAACAAAAAGAGG--G-ATGCC
i proCoq1.NW_012142813v1    I 49 C 0
s otoGar3.GL873530             629055 1513 -  36342412 CCTTACTCCCAGACCTCAGACACACAAACAAAACCAGAACTCTGCTGCAACGTGTTTATTATGTGCCAAAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATGCTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAGTGCAACGTCAGCTCAGCA----GGGGGGTGGG----------TTATGACACTGATTCTTTGGCACACAGCTTCCCTAAGAGGGGCAAGTGG-TTTTCAT----TGTTTTTTTA--------------AAAAAA---------------AGAAAGAAAGGAAAAAGTCAAGTTTT-CAGATTCCAGTAGCATTTCAGTCAACTACAACTGTTGTTTCATACATTCCTCAAACAAAAAGTAC-AGGGAAGGG-TACTTGCCCCCTCTCAGAGAAAGGGCTCCTGTGAGCCTTCATCTGCCCCCACC-AAAAGCAGCCC--TTTTTTTTTTTTT-------------------AGCTCAGTTAC--AAAGGAAAAAAGTCCTGTGACTTTGTGA-TTAAAAACTTCTATCA----ACCCCCCTC-ACATAAGTGCAACTTAAGAAGGTGCAGTAAACCATTT-TAAACTATATACAGCAGCCGCTCAAAATACCGTTTATCCGGTCCAGTTTCAAATAAAACAAG---------TTTTTTTCTTGGTTGCAAATACTTTCA-TTCGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAGGAAAG----AAAAAAATCTCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGA-TTTGGTTTAAATGAAGAGCAAAGTCTCC----TTGTTTACAGTAAAAAACACCAGCTGAACACTC-AGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACCAATGAGACCTGCACATCACCACCATCAGTATTGCAAGGAATGT-AAAAAAGCGCTTTTAATAAATAAACC------TAGGCATCCATG--------TCAATACCTTCTGGACAT-GTA--GTT----C-------------------------TTTTTTTGCTT--------TTTCATCGGCAAAATGAGGAACTAAAATCTGGGAAAACTACAGAGTCGCTTGGAGGGTGAGCCAG-GGGTCCTTGCCC-TGGCAAACCTC-CTGAAAACAAAACCCGACAAAACTCATTGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-AATTTTCCCTTGTCCTTGGGAAGCCAGCTAGCTCCCTGGTTGCCAGTGGCAGTGTGGTGCAGGCTGC-TGCCTGACCTGCCAGCTTTGGGCGCCACAGGCCACCAGGTAAGGCCAGCTCCTCTAGCTGGAATCTCGATTCTTCTGGTTCCGCATCAGGGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAG-AAGTACTTGAAGCAGACCTGGG-TGGGGCAACAAAAAGAGG--A-TTGCC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81346986 1475 + 145441459 CACCACACACACACC-CAGATACAGAGACAAAACTACAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAATTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACAACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACATCAGCTCAGCAG---GAGGGAGGGG----------TTATGACACTGGCTCTTTGGCACACAGCTTCCCTAAGAGAGGCAAGTAA-TCGTT-------------------------------------AAATTAAAA---------------AGAAAAGTCAAGTTTT-CAA-TTCCAGTAGCGTCTTTGTCAACTGTAACTGTTGATTCATACATTCGTCAAATAAAAGTTGTAA-GGAAGGG-TATTTG-CCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCACCTGCCCCCACCAAAAAGCAGCCC----------ttttttttttttttttaatttttaaGCTCAGTTAC--AAAAG-AAAAAGTCCTGTGAC--TGTGA-TTAAAAACTTCTATCAACCCTCCCCCA---ACATAAGTGCAACATA---AGGTGCCACAAACCATTT-AAAACTATATACAGCAGCTGCTC-AG--ACTTTTCCTCCGGTCCAGTTTTAAATAAAATAA----------TTTTTCTCTTGGTTACAAATGCTTTGA-TTTGCAACT----------GTGACCAGCAGTCCCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAAGAAAG--AAAAAAAAATATATTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCAGTAAAAACCCTCGAGCGTAAACTATGAAATATGA-TTTGGTTTAAATGAAGAGCAAAGTCTCCTTTGTTTGTTACAGTAAAAAACACCAGCTGAACACTC-AATTGATGCCGTTCAGGTGGGGGTTAAATCAATGGAAAGGCACTGTATGGCAACTGC-AGAATGAACGAACCAATGAGACCTGCGCATCACCACCATCAGTATTGCAAGGAATGT--AAAAAGCGC-TTTAATAAATAAACCCAAGTGTAGGCATCTGTG--------TCAG-ACCTTCTGGACACAGTG--GTT----G-------------------------TTGTTGTTATT---------TTCATTTGCAAAATGAGGAACTAGAATCTGGGAAAACTAC--AATTGCTTG-AGGGTGAGCC-GAGGGTCCTTGCTC-TGGCACACCCCACTGAAAACAAGACCTGACAAAACTCATTGTGCATTAATTAGTGCAGAAACAAAGACAGAGTTAGCAAGTACAAAGGTGACTAC-GATTCTCCCTTGTCTGCGCAAAGCT----AGCTCCCATGGCGCCTGT-GCAGCGAGTTGC--------TGCCTGACTTGACAGCCTTTGGCACCACAGGACACTGGGCAAGGCCAGCTCCTCTAGCTGGAATCTCAGTTCTTCTGGTTCCTCATTAGGGGGCTATGGTGGCGTAGGCCTTCCATGCTGTGTCGCCAGTGCCAGCAGCTTCTGCAA-AAGTACTTGAAGCAGACCTAGGTTAGGGG-ACAGAAAGAG----------
i mm10.chr7                 I 2 C 0
s canFam3.chr3               54405099 1513 +  91889043 CTTGGCTCCCACACCTCAGACACAGAGACAGAATGAGAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAACTACACCACAGCGTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACGTCAGCTCAGCAGGA-GGGGGGGGGG----------TTATGACACTGGTTCTTTGGCACACAGCTTCCCAAAGAGGGGCAAGTAGGTTTTTGT--TTTTTTTTTTTT---------------------AAAAAAAGA-----AGAAA-----GAAAAAGTCAAGTTTT-CAAATTCCAGTAGCATTTCAGT-GACTGCAACTGTTGCTTCATACACTTCTCAAATCAAAGAAAGAAGGGAAGGG-TACTTGTCCCCTCTGAGAGAAAGGGCTCCTGTGAGCCTTCACCTGCCCCCACCAAAAAGCAGCCC-TTTTTTTTTTTTTT-------------------AGCTCAGTTAC--AAAAGAAAAAAGTCCTGTGACTTTGTGA-TTAAAAACTTCTATCAACCCTCCCCCCC--ACATAAGTGCAACTTAAGAAGGTGCAATAAACCATTT-AGAACTATATACAGCAGCCGCTC-AAATACCGTTTATCCGGTCGAGTTTCGAATCCAAAAAAA-A----TTTATTATTCTTGGTTGCAAATGCCTTGA-TTTGCAACTGTGAGAAACAGTGACCAGCAGTCCCCCAGACACAAATTTGCTATAATGTTAAAAGCTGCCAGGAAAGAAAAAAAAAAATCTCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTGTTGTTTACAGTAAAAAACACCAGCTGAACACTC-AGTTTATGCCGTTCAGGTGGGGGTTAAATCAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACC---GAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGT-AAAAAAGCGCTTTTAATAAATAAACCTAGGTGTAGGCATC-GTG--------TCAATACCTTCTGGACAC-GTA--GTT----C-------------------------TTTTTTTT--------GCTTTTCATCGGCAAAATGAAGAACTAAAATCTGGGACAACTACAGAGTCGCGTGGAGGGTGAGCCAGAGGGTCCTTGCCC--AGCACACCCC-CTGAAAACAAAACCCGACAAAACTCATTGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTACGGATTTTCCCTTGTCCTTGGGAAGCC----AGCTCCCTGGTCGCCAGGGGCAGGATGCTGCAGGCTGC-TGCCTGACCTGCCAGCCTTGGGCGCCA------------------CAGCTCCTCTAACTGGCATCGCGGCTCTTCTGGTTCCGCATCAGGGGTCTGTGGTGGCGCAAGCCCTCCATGCTGTGCCGCCAGTGCCAGCAACTCCGGCAG-AAGTATTTGAAGCACACCT-GGTTGGGGGAGAAGGAGGAGA--G-AAGCC
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1795113 1577 +   3943991 TATTGTCCCCCAACCTCAGACACAGAGACAAAATCAGAACTCTGCTGCAACGTGTTTATTATGTGCC-AAAAAAACTACACCACAGCTTACTCCACACATCTGTAGGAGAGTGCAGTCTTGCCTGCATATACTACAATGAGGTAGAGACTTCACACACAGCTTCACAAAACCCACAGAGTAGCTGGGATATGCAACAATGCAACGTCAGCTCAGCAG---GAGGGAGAGGGGGAGGGGGTTTATGACACTGGTTCTTTGGCACACAGCTTCCC-AAGAGGGGCAAGTAG-TTTTATT--TTTATTTTTTCC-------CATTAAAAAAAATTAAGAAAGGA-----AGGAAGGAAGAAAAAAGTCAAGTGTT-CAAATTCCAGTAGCATTTCAGTCAACTGCAACTGTTGTTTCATACATTTCTCAAATGAAAGAAGTAAGGGAAGGG-TACTTGCCCCCTCTAAGAGAAAGGGCTCCTGTGAGCCTTCATCTGTCCCCACCAAAAAGCAGCCC-----------TTTT-------------------AGCTCAGTTACAAAAAAGAAAAAAGTCCTGTGACTTTGTGA-TTAAAAACTTCTATCAACCCTCCCCCCC--ACATAAGTGCAACTTAAGAAGGTGCAATAAACCATTT-AAAACTATATACAGCAGCCGCTC-AAACACCGTTTATCCGGTCCAGTTTCTAATCCAAAATAA-A----ATTTTTTTTCTTGGTTGCAAATGCCTTCA-TTTGCAACTGTGAAAAACAGTGACCAGCAGTCCCCCAGACACAAATTTGCT---GTGTTAAAAGCTGCCAGGAAAA------AAAAATCTCTTGTTCCAAACGACTTAAAAACTG-TTTTAAGGAGTGTAAAAAGGAACCGGTAAAAACCCTCGAGCGTAAAATATGAAATATGATTTTGGTTTAAATGAAGAGCAAAGTCTCC-TTGTAGTTTACAGTAAAAAACACCAGCTGAACACTC-AGTTTATGCCGTTCAGGTGGGGGTTAAATAAATGGAAAGGCACTGTATGGCAACTGCAAGAATGAA---ACCAATGAGACCTGCGCATCATCACCATCAGTATTGCAAGGAATGT-AAAAAAGCGCTTTTAATAAATAAACCTAGATGTAGGTATCCGTG--------TCAACACCTTCTGGACAC-GTA--GTG----T---TTTTTTTGTGTGGtttttttttttttttttttttttttGCTTTTCATTGGCAAAATGAGGAACTAAAATCTGGGAAAACTGCAGAGTCGCGTGAAGGGTGAGCCACAGGGTCCTTGCCC-TGGCACACCCC-CTGAAAACAAAACCTGACAAAACTCATTGTGCATTAATTAGTGCAGAAACAAAGACAGATTCAGCAAGTGCAAAGGTGACTAC-GATTTTCCCTTGTCCTCGGGAAGCC----AGCTCCCTGGCCGGCAGTGGCAGGATAGTGCAGGCTGC-CGCCTGACCTGCCAGCCTTGGGAGTCACAGGCCACTGGATAGGGCCAGCTCCTCTAGCTGGAATCTCGATTCTTCTGGTTTCGCATCAGTGGGCTGTGGTGGCGCAGGCCCTCCATGCTGTGCCGCCAGTGCCAGCAGCTCCGGCAG-AAGTACTTGAAGCAGACCTGGGTTGTGGGGAGGAAAGGGGGAAG-ATAGC
i dasNov3.JH570731          C 0 C 0

a score=664613.000000
s hg38.chr15_KI270850v1_alt    333837 52 +    430880 ATGCCTGTGTCAGCACCAGACACAGGAGCTG-TTGCACGAGCTGCT-TGTTCTG
s panTro5.chr15              63487254 52 +  83230942 ATGCCTGTGCCAGCACCAGACACAGGAGCTG-TTGCACGAGCTGCT-TGTTCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80444605 52 +  99763055 ATGCCTGTGTCAGCACCAGACACAGGAGCTG-TTGCACGAGCTGCT-TGTTCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        44514 52 -   1709092 ATGCCTGTGTCAGCACCAGACACAGGAGCTG-TTGCACGAGCTGCT-TGTTCTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17197017 52 - 121039945 ATGCTTGTGTCAGCACCAGACACAGAAGCTG-TTGCATGAGCTGCT-TGTTCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60885202 52 + 169600520 ATGCCTGTGTCAGCACCAGACAAAGGAGCTG-TTGCATGAGCTGCT-TGTTCTG
i rheMac8.chr7              I 3 C 0
s macFas5.chr7              108411911 52 - 171882078 ATGCCTGTGTCAGCACCAGACAAAGGAGCTG-TTGCATGAGCTGCT-TGTTCGG
i macFas5.chr7              I 3 C 0
s macNem1.NW_012011945v1        22357 52 -   2311642 ATGCCTGTGTCAGCACCAGACAAAGGAGCTG-TTGCATGAGCTGCT-TGTTCTG
i macNem1.NW_012011945v1    I 3 C 0
s cerAty1.NW_012002657v1        20517 52 -   1987038 ATGCCTGTGTCAGCACCAGACAAAGGAGCTG-TTGCATGAGCTGCT-TGCTCTG
i cerAty1.NW_012002657v1    I 3 C 0
s chlSab2.chr29              21101057 52 -  24206276 ATGCCTGTGCCAGCACCAGACAAAGGAGCTG-TTGCATGAGCTGCT-TGTTCTG
i chlSab2.chr29             I 3 C 0
s manLeu1.NW_012106908v1        16241 52 -   1397330 ATGCCTGTGTCACCACCAGACAAAGGAGCTG-TTGCATGAGCTGCT-TGTTCTG
i manLeu1.NW_012106908v1    I 3 C 0
s colAng1.NW_012117110v1        39514 52 -   1784207 ATGCCTGTGTCAGCACCAGACACAGGAGCTG-TTGCATGAGCTGCT-TGTTCTG
i colAng1.NW_012117110v1    I 3 C 0
s calJac3.chr6               22236482 52 + 158406734 ATGTCTGTGTCAGCACCGGACACAGGAGCTG-TTGCATGAGCTGCT-TGCTGTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50472233 52 +  54856640 ATGCCTGTGTCAGCACCAGACACAGGAGCTG-TTGCATGAGCTGCT-TGCTCTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       615896 47 -   2910086 ATGCCTGTGTCAGCACCGGACACCGGAGCTG------TGAGCTGCT-TGCTCTG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40643417 52 +  42888418 ATGCCTGTGTCAGCACTGGACACAGGAGCTG-TTGCATGAGCTGCT-TGCTCTG
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        13262 51 +     80520 ACGCCTGGGT-AGCACCAGCCACAGGAGCTG-CTGCACAAGTGGCT-TGCTCTG
i proCoq1.NW_012142813v1    C 0 I 110
s otoGar3.GL873530             630568 50 -  36342412 ATGCCTGGGTCAGCGCCAGGTGCAGAGAC---CTGCATGAGTGGCT-TTCTCTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81348461 29 + 145441459 ----CTGTGTTAACTCTAGATATAAAGG---------------------TTCCG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54406612 51 +  91889043 ATGTCTGAGTCAGCACCAGCTGTGGGGGTGG---GGATGGGGGGATGCACCCTG
i canFam3.chr3              C 0 I 3
s dasNov3.JH570731            1796690 53 +   3943991 ATGCCAGTGTCAGCACCAATCAGAGGGGTTTTTTGCATGAGCTACT-TGTTCTG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113268286 91 + 116334831 I

a score=736417.000000
s hg38.chr15_KI270850v1_alt    333889 64 +    430880 TTTGGAGAAGGG-TGGGAGACT-CCCGATGGCCTCTGT--GGGTTAG-AAGAAATGGT-CCCTAGGAATG
s panTro5.chr15              63487306 65 +  83230942 TTTGGAGAAGGGGTGGGAGACT-CCCGATGGCCTCTGT--GGGTTAG-AAGAGATGGT-CCCTAGGAATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80444657 65 +  99763055 TTTGGAGAAGGGGTGGGAGACT-CCCGATGGCCTCTGT--GGGTTAG-AAGAGATGGT-CCCTAGGAATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        44566 66 -   1709092 TTTGGAGAAGGGGTGGGAGACT-CCCGATGGCCTCTGT--GGGTTAG-AAGAGATGGTCCCCTAGGAATG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17197069 65 - 121039945 TTTGAAGAAGGGGTGGGAGACT-CCCGATGGCCTCTGT--GGGTTAG-AAGAGATGGT-CCATAGGAGCG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60885254 66 + 169600520 TTTGGAGAAGGGGTGGGAGACTCCCCGATGGCCTCTAT--GGATTAG-AAGAGATGGT-CCCTAGAAGCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108411963 65 - 171882078 TTTGGAGAAGGGGTGGGAGACT-CCCGATGGCCTCTAT--GGATTAG-AAGAGATGGT-GCCTAGAAGCG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        22409 65 -   2311642 TTTGGAGAAGGGGTGGGAGACT-CCCGATGGCCTCTAT--GGATTAG-AAGAGATGGT-CCCTAGAAGCG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        20569 65 -   1987038 TTTGGAGAAGGGGTGGGAGACT-CCCGATGGCCTCTAT--GGATTAG-AAGAGATGGT-CCCTAGAAGCG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21101109 65 -  24206276 TTTGGAGAAGGGGTGGGAGACT-CCCGATGGCCTCTAT--GGATTAG-AAGAGATGCT-CCCTAGAAGCG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        16293 65 -   1397330 TTTGGAGAAGGGGTGGGAGACT-CCCGATGGCCTCTAT--GGATTAG-AAGAGATGGT-CCCTAGAAGCG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        39566 65 -   1784207 TTTGGAGACGGGGTGGGAGACT-CCCGATGGCCTCTAT--GGATTAG-AAGAGATGGT-CCCTAGAAGCG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22236534 66 + 158406734 TTTGGAGAAGGGGTGAGAAACT-CCTGATGGCCTCTGT--GGGTTAGAAAGAAATGGA-CCCTAGGAGCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50472285 65 +  54856640 TTTGGAGAAGGGGTGGGAAACT-CCTGATGGCCTCTGT--GGGTTAG-AAGAGATGGT-CCCTAGGAGAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       615943 65 -   2910086 TTTGGAGAAGGGGTGGGAAACT-CCTGATGGCCTCTGT--GGGTTAG-AAGAGATGGT-TCCTAGGAGCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40643469 65 +  42888418 TTTGGAGAAGGGGTGGGAAACT-CCTGATGGCCTCTGT--GGGTTAG-AAGAGATGGT-CCCTAGGAGCA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             630618 44 -  36342412 -----------------------CCCAGTAGCTTCTGT-GGGGTTAG-AAGAGATGGT-TCCTGGGAGCC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81348490 62 + 145441459 CTTTAAGAGGAAAT--TAAACC-CC---TGGCTTCTGTGGGGGCTAG-AAGAGAGACT-TCCTGCTAGCT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54406666 55 +  91889043 -CCTGACAGGGAGCAGG-GATT-CCTGAGAGCCTCACA--CAGTTAG-AAGTCTTGGC------GAA---
i canFam3.chr3              I 3 C 0
s dasNov3.JH570731            1796743 66 +   3943991 CTCGAAGAGGGAGTGGGAGACT-CCCAGTGGCCTCTGT-CAGGCTAG-AAGAGATGGT-CTCTGGGAGCC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113268286 91 + 116334831 I
e proCoq1.NW_012142813v1        13313 110 +     80520 I

a score=470978.000000
s hg38.chr15_KI270850v1_alt    333953 30 +    430880 CTCTCACCCC-AACACAGAAGCCTGATTAAC
s panTro5.chr15              63487371 30 +  83230942 CTCTCACCCC-AACACAGAAGCCTGATTAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80444722 30 +  99763055 CTCTCACCCC-AACACAGAAGCCTGATTAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        44632 30 -   1709092 CTCTCACCCC-AACACAGAAGCCTGATTAAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17197134 30 - 121039945 CTCTCACCTC-AACACAGAAGCCTGATTAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60885320 30 + 169600520 CTCTCACCCC-AACACAGAAGCCTGATTAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108412028 30 - 171882078 CTCTCACCCC-AACACAGAAGCCTGATTAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        22474 30 -   2311642 CTCTCACCCC-AACACAGAAGCCTGATTAAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        20634 30 -   1987038 CTCTCACCCC-AACACAGAAGCCTGATTAAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21101174 30 -  24206276 CTCTCACCCC-AACACAGAAGCCTGATTAAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        16358 30 -   1397330 CTCTCACCCC-AACACAGAAGCCTGATTAAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        39631 30 -   1784207 CTCTCACCCC-AACACAGAAGCCTGATTAAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22236600 30 + 158406734 CTCTCACCCC-AACACAAAAGCCTGATTAAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50472350 30 +  54856640 CTCTCACCCC-AACACAAAAGCCTGATTAAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       616008 30 -   2910086 CTCTCACCCC-AACACAAAAGCCTGATTAAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40643534 30 +  42888418 CTCTCACTCC-AACACAAAAGCCTGATTAAC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113268377 30 + 116334831 CTCTCACCCC-AACACAGAAGTCTGATCAAC
i micMur3.chr9              I 91 I 78
s otoGar3.GL873530             630662 30 -  36342412 CTCTCATCCA-AACACAGAAGTCTGACCAAC
i otoGar3.GL873530          C 0 I 1
s mm10.chr7                  81348552 17 + 145441459 TTCTCATCCC-AACAGAG-------------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54406721 30 +  91889043 -CCTCACCCCAAACACAGAGGCCTGACCAAC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1796809 31 +   3943991 CTCTCACCTCTATCACAGAGGACAGACTAGC
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        13313 110 +     80520 I

a score=267136.000000
s hg38.chr15_KI270850v1_alt    333983 37 +    430880 TATGGCAAACCCACC--ATCC---TTGTTACAGGTCCCCTTA
s panTro5.chr15              63487401 37 +  83230942 TATGGCAAACCCACC--ATCC---TTGTTACAGGTCCCCTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80444752 37 +  99763055 TATGGCAAACCCACC--ATCC---TTGTTACAGGTCCCCTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        44662 37 -   1709092 TATGGCAAACCCACC--ATCC---TTGTTACAGGTCCCCTTA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17197164 37 - 121039945 TATGGCAAACCCACC--ATCC---TCGTTACGGGTCCCCTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60885350 37 + 169600520 TATGGCAAACCCGCC--ATCC---TTGTTACAGGTCCCCTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108412058 37 - 171882078 TATGGCAAACCCGCC--ATCC---TTGTTACAGGTCCCCTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        22504 37 -   2311642 TATGGCAAACCCGCC--ATCC---TTGTTACAGGTCCCCTTA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        20664 37 -   1987038 TATGGCAAACCCACC--ATCC---TTGTTACAGGTCCCCTTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21101204 37 -  24206276 TATGGCAAACCTGCC--ATCC---TTGTTACAGGTCCCCTTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        16388 37 -   1397330 TATGGCAAACCCGCC--ATCC---TTGTTACAGGTCCCCTTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        39661 37 -   1784207 TATGGCAAACCCGCC--ATCC---TTGTTACAGGTCCCCATA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22236630 27 + 158406734 TATG------TAACC--ATCC---TGCTTACAGGTCCC----
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50472380 33 +  54856640 TATGGCAAACCCACC--ATCC---TGCTTACAGGTCCC----
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       616038 33 -   2910086 TATGGCAAACCCACC--ATCC---TGCTTACAAGTCCC----
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40643564 33 +  42888418 TATGGCAAACCCACC--ATCC---TGCTTACAGGTCCC----
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             630693 36 -  36342412 AGTACAAAACCCAGC--ACCTGCATTTGTGTGGGCACC----
i otoGar3.GL873530          I 1 C 0
s mm10.chr7                  81348569  4 + 145441459 --------------C--TTC----------------------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54406751 29 +  91889043 CATGGCAAACCCACTAAATGC---TCAactca----------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1796840 36 +   3943991 CATGTAAAATAGATC--GGCT--ATTTCTACGGTGCCCAA--
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113268407 78 + 116334831 I
e proCoq1.NW_012142813v1        13313 110 +     80520 I

a score=584572.000000
s hg38.chr15_KI270850v1_alt    334020 44 +    430880 CTTAAACATGTTGGGCTCGTAGTGTGTGCAGAGACCATGCTAGT
s panTro5.chr15              63487438 44 +  83230942 CTTAAACATGTTGGGCTCGTAGTGTGTGCAGAGACCATGCTAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80444789 44 +  99763055 CTTAAACATGTTGGGCTCGTAGTGTGTGCAGAGACCATGCTAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        44699 44 -   1709092 CTTAAACATGTTGGGCTCGTAGTGTGTGCAGAGACCATGCTAGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17197201 44 - 121039945 CTTAAACATGTTGGGCTCATAGTGTGTGCAGAGACCATGCTAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60885387 44 + 169600520 CTTAAACATGTCGGGCTCCTAGTGTGTACAGAGACCATGCTAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108412095 44 - 171882078 CTTAAACATGTCGGGCTCCTAGTGTGTACAGAGACCATGCTAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        22541 44 -   2311642 CTTAAACATGTCGGGCTCCTAGTGTGTACAGAGACCATGCTAGT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        20701 44 -   1987038 CTTAAACACGTCGGGCTCCTAGTGTGTACAGAGACCATGCCAGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21101241 44 -  24206276 CTTAAACACGTCAGGCTCCAAGTATGTACAGAGACCATGCTAGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        16425 44 -   1397330 CTTAAACACGTCGGGCTCCTAGTGTGTACAGAGACCATGCTAGT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        39698 44 -   1784207 CTTAAACACGTTGGGCTCCTAGTGTGTACAGAGACCAATCTAGT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22236657 44 + 158406734 CTTAAACATGTTGGGCTCCCAGTATGTACAGGGACCATGCTAGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50472413 44 +  54856640 CTTAAACATGTTGAGCTCCTAGTATGTACAGAGACCATGCTAGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       616071 44 -   2910086 CTTAAACATGTTGAGCTCCTAGTATGTACAGAGCCCATGCTAGT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40643597 44 +  42888418 CTTAAACATGTTGGGCTCCTAGCATGTACAGAGACCATGCTAGT
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        13423 44 +     80520 CTTAAACATGCTGGGCTCCTACTGTGTACGAAGACTGCGCCAGC
i proCoq1.NW_012142813v1    I 110 C 0
s otoGar3.GL873530             630729 42 -  36342412 CATAAACATGCTGGGCTCCTACTGTGCACAGAGAC--AGCCAGC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81348573 35 + 145441459 TGCAAACAGTTTAGGCTTCTGGTATG--------ACATGTGAG-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54406780 42 +  91889043 accaaacatactgggttcctactgtgtacaga--ctgtgctagC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1796876 44 +   3943991 GTTAAATGCACTGGGCTGCTATTGTATACAGAGACTGTGCCAAC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113268407 78 + 116334831 I

a score=1303728.000000
s hg38.chr15_KI270850v1_alt    334064 88 +    430880 TTCTCTTATCCCCTCTAACCATGACAGCTGCTCTCCTATTCCCCTG---------CCCTTCTCACCTCCTACAGAG----TAGTTGTATCACATGGCTGCT
s panTro5.chr15              63487482 88 +  83230942 TTCTCTTAACCCCTCTAACCATGACAGCTGCTCACCTATTCCCCTG---------CCCTTCTCACCTCCTACAGAG----TAGTTGTATCACATGGCTGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80444833 88 +  99763055 TTCTCTTAACCCCTCTAACCATGACAGCTGCTCACCTATTCCCCTG---------CCCTTCTCACCTCCTACAGAG----TAGTTGTATCACATGGCTGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        44743 88 -   1709092 TTCTCTTATCCCCTCTAACCATGACAGCTGCTCTCCTATTCCCCTG---------CCCTTCTCACCTCCTACAGAG----TAGTTGTATCACATGGCTGCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17197245 87 - 121039945 TTCTCTTA-CCCCTCTAACCATGACAGCTGCTCTCCTATTCCCCTG---------CCCTTCTCACCTCCTACAGAG----TAGTTGTATCACATGGCTGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60885431 88 + 169600520 TTCTCTTATCTCCTCTAACCATGACAGCCGCTGTCCTGTTCCCCTG---------CCCTTCTCACCTCCTACAAAG----TAGTTGTATCACATGGTTGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108412139 88 - 171882078 TTCTCTTATCTCCTCTAACCATGACAGCCGCTGTCCTGTTCCCCTG---------CCCTTCTCACCTCCTACAAAG----TAGTTGTATCACATGGTTGCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        22585 88 -   2311642 TTCTCTTATCTCCTCTAACCATGACAGCCGCTGTCCTGTTCCCCTG---------CCCTTCTCACCTCCTACAAAG----TAGTTGTATCACATGGTTGCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        20745 88 -   1987038 TTCTCTTATCTCCTCTAACCATGACAGCTGCTGTCCTCTTCCCCTG---------CCCTTCTCACCTCCTACAAAG----TAGTTGTATCACATGGTTGCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21101285 88 -  24206276 TTCTCTTATCTCCTCTAACCATGACAGCTGCTGTCCTGTTCCCCTG---------CCCTTCTCACCTCCTACAAAG----TAGTTGTATCACATGGTTGCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        16469 88 -   1397330 TTCTCTTATCTCCTCTAACCATGACAGCTGCTGTCCTCTTCCCCTG---------CCCTTCTCACCTCCTACAAAG----TAGTTGTATCACATGGTTGCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        39742 88 -   1784207 TTCTCTTATCTCCTCTAACTATGACAGCTGCTCTCCTATTCCCCTG---------CCCTTCTCACCTCCTACAAAG----TAGTTGTATCATATGGTTGCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22236701 88 + 158406734 TTCTCTTATTCCTTCTAACCATGACAGCTGCTCTCCTATTCCCCTG---------CCCTTCTCACCTCCTACAGAA----TAGTTGTATCACGTGGCTGCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50472457 88 +  54856640 TTCTCTTATCCCTTCTAACCACGACAGCTGCTCTCCTATTCCCCTG---------CCCTTCTCACTTCCTACAGGG----TAGTTGTATCACATGGCTGCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       616115 87 -   2910086 TTCTCTTATCCCTTCTAACCATGACAGCTGCTCTCCTATTCCCCTG---------CCCTTCTCACCTCCTACAGAG----TAGTTGTATCACATGGC-GCT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40643641 88 +  42888418 TTCTCTTATCCCTTCTAACCATGACAGCTGCTCTCTTATTCCCCTG---------CCCTTCTCACCTCCTACAGAG----TAGTTGTATCACATGGCTGCT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113268485 88 + 116334831 TTCTCTCATCCCCTCGAACCACCGCAGCTGCTCTCCCACTCCCCTG---------CCCTTCTCGCCTCCTACAGAG----CAGCTGCATCACACGGCTGCT
i micMur3.chr9              I 78 I 195
s proCoq1.NW_012142813v1        13467 88 +     80520 TTCCCTCATCCCCTCTAACCACTACAGCTGCTCTCCTATTGCCCTG---------CCCTTCTCACCTCCTACAGAG----TAGCTGCATCACACAGCTGCT
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             630771 83 -  36342412 -TCCCCCAT-CCCTCCGACCACTACAGCTGCTCTCTTGTT-CCTTG---------CCTTTCTTACCTCCTAC--AC----TAGCTTTATCACAGGGCTGTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81348608 67 + 145441459 -----------------ACCTTG-TAGCT----TCCCAATTTTCTT---------CCCTTCT---CTTCTACACAGCCATTCATTCCGTCTCAAGACTGCC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54406822 83 +  91889043 TCCCCTCACGCTCTCCTACCACCAGGGCTGCCTTCAGGTGCCCTGA-------------TCTCACCTCCTACAGAG----CAGCTGTATCATAT-GCTGCT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1796920 94 +   3943991 TTCCCTCATCCCCTAGTATTGTTACATCTGCT---CTATTCCCCTGCCGTAGCCTCCCTTCTCACCTCCTACAGAA----CACCTGTATCGCATGGCTGTG
i dasNov3.JH570731          C 0 C 0

a score=1186403.000000
s hg38.chr15_KI270850v1_alt    334152  93 +    430880 AACGTG-GAGA-------------ATGTATAAGGATACTGACTAAAAATTCTAATGCT-AGGCAACATCCTGCTTTCTTCCC---------------ATTAAGTGAggagaggtgactgg----gtt
s panTro5.chr15              63487570  93 +  83230942 AACGTG-GAGA-------------ATGTATAAAGATACTGACTAAAAATTCTAATGCT-AGGCAACATCCTGCTTTCTTCCC---------------ATTAAGTGAggagaggtgactgg----gtt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80444921  93 +  99763055 AACGTG-GAGA-------------ATGTATAAAGATACTGACTAAAAATTCTAATGCT-AGGCAACATCCTGCTTTCTTCCC---------------ATTAAGTGAGGAGAGGTGACTGG----GTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        44831  93 -   1709092 AACGTG-GAGA-------------ATGTATAAAGATACTGACTAAAAATTCTAATGCT-AGGCAACATCCTGCTTTCTTCCC---------------ATTAAGtgaagagaggtgactgg----gtt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17197332  97 - 121039945 AACGTG-GAGA-------------ATGTATAAAGACACTGACTAAAAATTCTAATGCT-AGGCAACATCCTGCTTTCTTCCC---------------ATTAAGTGAGGAGAGGTGActgggtttgtt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60885519  97 + 169600520 AACATG-GAGA-------------ATGTATAAAGACACTGACAACAAATTCTAATGCT-AGGCAACATCCTGCTTTCTTCCC---------------ATTAAGTGAGGAGAGGTGActgggtttgtt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108412227  97 - 171882078 AACATG-GAGA-------------ATGTATAAAGACACTGACAACAAATTCTAATGCT-AGGCAACATCCTGCTTTCTTCCC---------------ATTAAGTGAGGAGAGGTGACTGGGTTTGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        22673  97 -   2311642 AACATG-GAGA-------------ATGTATAAAGACACTGACAACAAATTCTAATGCT-AGGCAACATCCTGCTTTCTTCCC---------------ATTAAGTGAGGAGAGGTGActgggtttgtt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        20833  97 -   1987038 AATATG-GAGA-------------ATGTATAAAGACACTGACAACAAATTCTAATGCT-AGGCAACATCCTGCTTTCTTCCC---------------ATTAAGTGAGGAGAGGTGActgggtttgtt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21101373  97 -  24206276 AACATG-GAGA-------------ATGTATAAAGACACTGACTACAAATTCTAATGCT-AGGCAACATCATGCTTTCTTCCC---------------ATTAAGTGAGGAGAGGTGACTGGGTTTGTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        16557  97 -   1397330 AACATG-GAGA-------------ATGTATAAAGACACTGACAACAAATTCTAATGCT-AGGCAACATCCTGCTTTCTTCCC---------------ATTAAGTGAGGAGAGGTGActgggtttgtt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        39830  97 -   1784207 AACATG-GAGA-------------CTGTATAAAGACACTGACTACAAATTCTAATGCT-AGGCAACATCCTGCTTTCTTCCC---------------ATTAAGTGAGGAGAGGTGActgggtttgtt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22236789 108 + 158406734 AACATG-GAGA-------------ATGTATAAAGACACTGACTACAAATTCTAATTCT-AGGCAACATGCTGCCTTCTTCCCATCTCCCTTCTTCCCACTAAATGAggagaggtgactgg----gtt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50472545 108 +  54856640 AACATG-GAGA-------------ATGTATAAAGACACTGACTACAAATTCTAATGCT-AGGCAACATGCTGCCTTCTTCCCATCTCCCCTCTTCCTACTAAGTGAggagaggtgactgg----gtt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       616202  93 -   2910086 AACATG-GAGA-------------ATGTATAAAGACACTGACTACAAATTCTAATGCT-ACGCAACATGCTGCCTTCTTCCC---------------ACTAAGTGAggagaggtgactgg----gtt
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40643729 107 +  42888418 AACATG-GAGA-------------ATGTATAAAGCCACTGACTACAAATTCTAATGCTCAGGCAACATGCTGCCTTCTTCCCATC-CCCTTCTTCCCACTAAGTGAGGAGA-GTGACTGG----CTT
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        13555  89 +     80520 AATGTGGGAGA-------------ACGTTTAAAGACACTGACTACAGATTCTAAAGCT-AGGCAACATGGCTTCTTCTTCCC---------------ACTAAC-----AGAGGTGActgg----gtt
i proCoq1.NW_012142813v1    C 0 I 25
s otoGar3.GL873530             630854  89 -  36342412 ACTGTGAGAGA-------------GGATTTAAAGACACTGACTGCAGA--CTACTGCT-AGGCAACATG---CCTTCTTTCC---------------ACTGACAGAGGAGAGGTGACTGG----GTA
i otoGar3.GL873530          C 0 I 4
s mm10.chr7                  81348675  85 + 145441459 AACATGAGAGA-------------ATGC-TAAAGA-ACTGGTTACAGATTCAAGTATT-AAGAGAAATGCCTTCCTTTTCTC---------------AGT-------GAGAAGTGACTGG----TTT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54406905  94 +  91889043 AATTTAGGAGA-------------ACATTCAAAGATAGCAGCTCCATGTCCTAATGCT-AGGCAACATGCTGTCCTCTTCAC---------------ACTAAGTGAGGAGAGGCAACAGG----GTA
i canFam3.chr3              C 0 I 4
s dasNov3.JH570731            1797014 106 +   3943991 AACATG-GAAGAACTTTTAAGGACACTTTTAAAGAAACTGACTACAGCGTCTAATGCT-GAGTAACATACCTTCCTCTTtag---------------actaagtaaggagaagtgactca----gtc
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113268573 195 + 116334831 I

a score=256736.000000
s hg38.chr15_KI270850v1_alt    334245 24 +    430880 tctcag-tct-agtcccatctcttgg
s panTro5.chr15              63487663 24 +  83230942 tctcag-tct-agtcccatctcttgg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445014 24 +  99763055 TCTCAG-TCT-AGTCCCATCTCTTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        44924 24 -   1709092 tctcag-tct-agtcccatctcttgg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17197429 24 - 121039945 tctcag-ttt-agtcccatctcttgg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60885616 24 + 169600520 tctcag-tct-agtcccatctctggg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108412324 24 - 171882078 TCTCAG-tct-agtcccatctctggg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        22770 24 -   2311642 tctcag-tct-agtcccatctctggg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        20930 24 -   1987038 tctcag-tct-agtcccatctctggg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21101470 24 -  24206276 TCTCAG-tct-agtcccatctctggg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        16654 24 -   1397330 tctcag-tct-agtcccatctctggg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        39927 24 -   1784207 tctcag-tct-agtcccatctctggg
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22236897 24 + 158406734 tctcag-tct-agtcccatctcttgc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50472653 24 +  54856640 tctcag-tct-agtcccatctcttgc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       616295 24 -   2910086 tctcag-tct-agtcccatctcttgc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40643836 23 +  42888418 TCTCAG-TCT-AGT-CCATCTCTTGC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             630947 23 -  36342412 CCTCAG-TCTCAGTCCCCCTTCTT--
i otoGar3.GL873530          I 4 C 0
s mm10.chr7                  81348760 11 + 145441459 -----T-GCT-AG--------CTGGG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54407003 25 +  91889043 CCACagccct-ggtcccacctctggc
i canFam3.chr3              I 4 C 0
s dasNov3.JH570731            1797120 17 +   3943991 --------tc-agtcccaccttttgc
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113268573 195 + 116334831 I
e proCoq1.NW_012142813v1        13644 25 +     80520 I

a score=1039478.000000
s hg38.chr15_KI270850v1_alt    334269 76 +    430880 ttgctgtgtaacgtcaggcaagccactaatctctgagcaatta-tctgactatggagattatCTGTGAAAGATCCAG
s panTro5.chr15              63487687 76 +  83230942 ttgctgtgtaacgtcaggcaagccactaatctctgagcaatta-tctgactatggagattatCTGTGAAAGATCCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445038 76 +  99763055 TTGCTGTGTAACGTCAGGCAAGCCACTAATCTCTGAGCAATTA-TCTGACTATGGAGATTATCTGTGAAAGATCCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        44948 76 -   1709092 ttgctgtgtaacgtcaagcaaaccactaatctctgagcaatta-tctgactatggagattatCTGTGAAAGATCCAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17197453 76 - 121039945 ctgctgtgtaacctcaagcaagccactaatctctgagcaatta-tctgactatggagattatCTGTGAAAGATCCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60885640 76 + 169600520 ttgctgtgtaatctcaggcaagccactaatgtctgagcagtta-tctgactatggagattatCTGTGAAAGATCCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108412348 76 - 171882078 ttgctgtgtaacctcaggaaagccactAATGTCTGAGCAGTTA-TCTGACTATGGAGATTATCTGTGAAAGATCCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        22794 76 -   2311642 ttgctgtgtaacctcaggcaagccactaatgtctgagcagtta-tctgactatggagattatCTGTGAAAGATCCAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        20954 76 -   1987038 ttgctgtgtaacctcaggcaagccactaatctctgagcaatta-tctgactatggagattatCTGTGAAAGATCCAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21101494 76 -  24206276 ttgctgtgtaacctcaggcaagccactaatctctgagcAATTA-TCTGACTATGGAGATTATCTGTGAAAGATCCAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        16678 76 -   1397330 ttgctgtgtaacctcaggcaagccactaatctctgagcaatta-tctgactatggagattatCTGTGAAAGATCCAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        39951 76 -   1784207 ttgctgtgtaacctcaggcaagccactaatctctgagcaatta-tctgactatggagattatCTGTGAAAGATCCAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22236921 76 + 158406734 ttgttgtgtaacctcaggcaagccactaatctctgagcAAACA-TCTGACTATGAAGATTATCTGTGAAAGATCCAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50472677 76 +  54856640 ttgttgtgtaacctcaggcaagccactaatctctgagcAATTA-TCTGACTATGAAGATTATCTGTGAAAGATCCAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       616319 76 -   2910086 ttgttgtgtaacctcaggcaagccactaatctctgagcAATTA-TCTGACTATGAAGATTATCTATGAAAGATCCAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40643859 75 +  42888418 TTGTTGTGT-ACCTCAGGCAAGCCACTAATCACTGAGCAATTA-TTTGACTATGAAGATTATCTGTGAAAGATCCAG
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        13669 74 +     80520 ttgctatgtaacctcaggcaagccactgac--ctgagcaattg-tctgaaaatggaggtcatCTGTGAAAGATGCTG
i proCoq1.NW_012142813v1    I 25 C 0
s otoGar3.GL873530             630970 55 -  36342412 -----------------GCAAGCCACTAAC--CTAAGCAGTTATTCTGAAAGCAGAGGTCA-CTGTG--AGATGTCA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81348771 71 + 145441459 ----TAACCAACCCCAAGCAAGTCA-TAACCTCCTAACAAGAA-TATGACATTGAGGAGTCACTGTGAAAGTTACTA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54407028 76 +  91889043 tagccgtgtaacttcagccaacccaccaacctttgaaccatga-cttgaacatgggggtcatctgtgaatgataggg
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1797137 75 +   3943991 tagctgtggaacttcaggcaagccacaaacctctgaacaatta-tctgaaaa-ggggatCACCTGTGAAAGATACTA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113268573 195 + 116334831 I

a score=1542044.000000
s hg38.chr15_KI270850v1_alt    334345 105 +    430880 ATCCATAAAAG------CCTCGTAGATGAGGCTGATCAGAGA-----GATA-CTTGGTCTCAGGCTTTAACTAACAATTCAAACTTAACTTCAAACTCTCACTTGAGAGCCTCAGTT
s panTro5.chr15              63487763 105 +  83230942 ATCCATAAAAG------CCTCGCAGATGAGGCTGATCAGAGA-----GATA-CTTGGTCTCAGGCTTTAGCTAACAATTCAAACTTAACTTCAAACTCTCACTTCAGAGCCTCAGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445114 105 +  99763055 ATCCATAAAAG------CCTCGCAGATGAGGCTGATCAGAGA-----GATA-CTTGGTCTCAGGCTTTAGCTAACAATTCAAACTTAACTTCAAACTCTCACTTCAGAGCCTCAGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45024 105 -   1709092 ATCCATAAAAG------CCTGGTAGATGAGGCTGATCAGAGA-----GATA-CTTGGTCTCAGGTTTTAGCTAACAATTCAAACTTAACTTCAAACTCTCACTTGAGAGCCTCAGTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17197529 105 - 121039945 ATCCATAAAAG------CCTGGTAGATGAGGCTGATCAGAGA-----GGTA-TTTGGTCTCAGGCTTTAGCTAACGATCCAAACTTAACTTCAAACTCTCACTTGAGAGCCTCAGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60885716 105 + 169600520 ATCCATAAAAG------CCTGGTAGATGAGCCTGATCAGAGA-----GATA-CTCGTTCTCAGGCTTTAGCTAACAATCCAAACTTAACTTCAAACTCTCACTTGAGAGCCTCGGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108412424 105 - 171882078 ATCCATAAAAG------CCTGATAGATGAGCCTGATCAGAGA-----GATA-CTCGTTCTCAGGCTTTAGCTAACAATCCAAACTTAACTTCAAACTCTCACTTGAGAGCCTCGGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        22870 110 -   2311642 ATCCATAAAAG------CCTGGTAGATGAGCCTGATCAGAGAGATACGATA-CTCGTTCTCAGGCTTTAGCTAACAATCCAAACTTAACTTCAAACTCTCACTTGAGAGCCTCGGTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        21030 105 -   1987038 ATCCATAAAAG------CCTGGTAGATGAGCCTGATCAGAGA-----GATG-CTCGTTCTCAGGCTTTAGCTAACAATCCAAACTTAACTTCAAACTCTCACTTGAGAGCCTCGGTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21101570 105 -  24206276 ATCCATAAAAG------CCTGGTAGATGAGCCTGATCAGAGA-----GATA-CTCGTTCTCAGGCTTTAGCTAACAATCCAAACTTAATTTCAAACTCTCACTTGAGAGCCTCGGTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        16754 105 -   1397330 ATCCATAAAAG------CCTGGTAGATGAGCCTGATCAGAGA-----GATG-CTCGTTCTCAGGCTTTAGCTAACAATCCAAACTTAACTTCAAACTCTCACTTGAGAGCCTCGGTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        40027 105 -   1784207 ATCCATAAAAG------CCTGGTAGATGAGCCTGATCAGAGA-----GATA-CTCATTCTCAGGCTTTAGCTAACAATCCAAACTTAACTTCAAATTCTCACTTGAGAGCCTCGGTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22236997 103 + 158406734 ATCCATAAAAG------CCTGCTAGAAGAGGCTGATC--AGA-----GATA-CTTGTTCTCAGGCTTTACCTAACAATCCAAACTTAATTTCAAACTGTCACTTGAGAGCCTCAGTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50472753 105 +  54856640 ATCCATAAAAG------CCTGCTAGAAGAGGCTGATCAGAGA-----GATA-CTTGTTCTCAGGCTTTACCTAACAATCCAAACTTAATTTCAAACTGTCACTTGAGAGCTTCAGTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       616395 103 -   2910086 ATCCATAAAAG------CCTGCTAGAAGAGGC--ATCAGAGA-----GATA-CTTGTTCTCAGGCTTTACCTAACAATCCAAACTTAATTTCAAACGGTCACTTGAGAGCCTCAGTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40643934 105 +  42888418 ATCCATAAAAG------CCTGCTAGAAGAGGCTGATCAGAGA-----GATA-CTTGTTCTCAGGCTTTACCTAACAATCCAAACTTAATTTCAAACTGTCACTTGAGAGCCTCAATT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113268768 100 + 116334831 ATCCATAAAAG------CCTGTTAGAAGAGGCTGATCAGAAA-----GAGA-CTTGTTCGCAGGCTTTACCTAATAATCAGAAC-----TTCAAATTCTCACTTGGGAACCTCAGTT
i micMur3.chr9              I 195 C 0
s proCoq1.NW_012142813v1        13743 100 +     80520 ATCCATAAAAG------CCTGCTAGAAGAGGCTGATCAGAGA-----GAGA-CTTGTTCTCAGGCTTTAACTAAAAATCCAAAC-----TTCAAACTCTCACTTGGGAGCCTCAGTT
i proCoq1.NW_012142813v1    C 0 I 359
s otoGar3.GL873530             631025  96 -  36342412 ATCCATAAAAG-------CTCCTACTAGAGGCTGACCAG--A-----GATA-CTTGTTCTCAAGC-TTATCTAATAATCCAAAC-----TTCAGACTCTCATGTGGGAGCCTCAGTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81348842  88 + 145441459 ATCCATAGAAG-------CTGGT------------TTAGAAA-----GATA--TTGTTTTCACGCTTTATCTTACTATCCAAACTTATTGTAAG---CTCACGTGGGAGCTTCTGTT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54407104 101 +  91889043 ataCACACAAG------TCTGCTAGAAGAGGCTCATTAGAGA-----GATAACTTGTTCTGGGTGTTAACCCAGCAACCCAAATGTA-CCTAACACTCTCGCTTTGGAGCCTC----
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1797212 111 +   3943991 ATACATAAAAGACAATGTCTTCTGGAAGATGTTGATCACAGAA----GATA-CTTGTTCTCAGGCTTTACCCAACAACCCAAACTTA-CTTCAAACCCTCCCTTTGAAGCCTCAGTT
i dasNov3.JH570731          C 0 C 0

a score=19110.000000
s hg38.chr15_KI270850v1_alt    334450 1 +    430880 T
s panTro5.chr15              63487868 1 +  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445219 1 +  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45129 1 -   1709092 T
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17197634 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60885821 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108412529 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        22980 1 -   2311642 T
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        21135 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21101675 1 -  24206276 T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        16859 1 -   1397330 T
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        40132 1 -   1784207 T
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237100 1 + 158406734 T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50472858 1 +  54856640 T
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       616498 1 -   2910086 T
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40644039 1 +  42888418 T
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113268868 1 + 116334831 T
i micMur3.chr9              C 0 I 54
s otoGar3.GL873530             631121 1 -  36342412 T
i otoGar3.GL873530          C 0 I 3
s mm10.chr7                  81348930 1 + 145441459 T
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54407205 1 +  91889043 T
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1797323 1 +   3943991 T
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        13843 359 +     80520 I

a score=713191.000000
s hg38.chr15_KI270850v1_alt    334451 76 +    430880 AACCA-----TATTCA--GAGACTCCAAATCTGATCAAT-GGCATCACTGCAACAAATTTTTAAACAAAATTTAAAAAGCACCC
s panTro5.chr15              63487869 76 +  83230942 AACCA-----TATTCA--GAGACTCCAAATCTGATCAAT-GGCATCACTGCAACAAATTTTTAAATAAAATTTAAAAAGCACCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445220 76 +  99763055 AACCA-----TATTCA--GAGACTCCAAATCTGATCAAT-GGCATCACTGCAACAAATTTTTAAATAAAATTTAAAAAGCACCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45130 76 -   1709092 AACCA-----TATTCA--GAGACTCCAAATCTGATCAAT-GGCATCACTGCAACAAATTTTTAAATAAAATTTAAAAAGCACCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17197635 76 - 121039945 AACCA-----TATTCA--GAGACTCCAAATCTGATCAAC-GGCATCACTGCAAAAAATTTTTAAATAAAATTTAAAAAGCACCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60885822 77 + 169600520 AACCA-----TATACA-GGAGACTCCAAATCTGAGCAAT-GGCATTACTGCAAAAAAATTTTAAATAAAATTTAAAAAGCACCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108412530 77 - 171882078 AACCA-----TATACA-GGAGACTCCAAATCTGAGCAAT-GGCATTACTGTAAAAAAATTTTAAATAAAATTTAAAAAGCACCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        22981 77 -   2311642 AACCA-----TATACA-GGAGACTCCAAATCTGAGCAAT-GGCATTACTGCAAAAAAATTTTAAATAAAATTTAAAAAGCACCC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        21136 77 -   1987038 AACCA-----TATACA-GGAGGCTCCAAATCTGAGCAAT-GGCATTACTGCAAAAAAATTTTAAATAAAATTTAAAAAGCACCC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21101676 77 -  24206276 AACCA-----TATACA-GGAGACTCCAAATCTGAGCAAT-GGCATTACTGCAAAAAAATTTTAAATAAAATTTAAAAAGCACCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        16860 77 -   1397330 AACCA-----TATACA-GGAGGCTCCAAATCTGAGCAAT-GGCATTACTGCAAAAAAATTTTAAATAAAATTTAAAAAGCACCC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        40133 77 -   1784207 AACCA-----TATACA-GGAGACTCCAAATCTGAGCAAT-GGCATTACTGCAAAAAAATTTTAAATAAAATTTAAAAAGCACCC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237101 76 + 158406734 AACCA-----TGTACA--GAGACTCCAAATCTGAACAAT-GGTATAATGGCAACaatttttaaaataaaatttaaaaaGCACCC
i calJac3.chr6              C 0 I 1
s saiBol1.JH378108           50472859 75 +  54856640 AACCA-----TGTACA--GAGACTCCACATCTGAACAAT-GGCATCACTGCaaaaattttaaaaataaaatttaaaaaGCA-CC
i saiBol1.JH378108          C 0 I 1
s cebCap1.NW_016107610v1       616499 76 -   2910086 AACCA-----TGTACA--GAGACTCCACATCTGAACAAT-GGCATCACTGCAAAAATTCTAAAAATAAAATTAAAAAAGCACCC
i cebCap1.NW_016107610v1    C 0 I 1
s aotNan1.NW_018505940v1     40644040 76 +  42888418 AACCA-----CATACA--GAGACTCCAAATCTGAACAAT-GGCATCACTGCAAAAATTTTAAAAATAAAATTAAAAAAGCACCC
i aotNan1.NW_018505940v1    C 0 I 348
s otoGar3.GL873530             631125 68 -  36342412 TACCA-----TCTACACAGAGACTCCAAACCTGAGCAAC-AGCATCACTGTGCA-----TTTAAAAAA-----AAAAAGCCTCC
i otoGar3.GL873530          I 3 C 0
s mm10.chr7                  81348931 48 + 145441459 GACTT-----TATTTA--TAGGCTCCATAC--AAATACC-AGCATCACTGTAAG-----------------TCAA---------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54407206 31 +  91889043 --------------------------GACCCTGAGCAATAAGCACCAGTGCAAAAAA---------------------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1797324 63 +   3943991 AACTACTCTTTGCCCA--GAGACTCCAAACCTGAGTGAT-AGCACCACTGCAAAAAC------AACAAAAGC------------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113268869 54 + 116334831 I
e proCoq1.NW_012142813v1        13843 359 +     80520 I

a score=10028.000000
s hg38.chr15_KI270850v1_alt    334527 1 +    430880 A
s panTro5.chr15              63487945 1 +  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445296 1 +  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45206 1 -   1709092 A
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17197711 1 - 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60885899 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108412607 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        23058 1 -   2311642 A
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        21213 1 -   1987038 A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21101753 1 -  24206276 A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        16937 1 -   1397330 A
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        40210 1 -   1784207 G
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237178 1 + 158406734 A
i calJac3.chr6              I 1 C 0
s saiBol1.JH378108           50472935 1 +  54856640 A
i saiBol1.JH378108          I 1 C 0
s cebCap1.NW_016107610v1       616576 1 -   2910086 A
i cebCap1.NW_016107610v1    I 1 C 0
s otoGar3.GL873530             631193 1 -  36342412 A
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81348979 1 + 145441459 A
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54407237 1 +  91889043 G
i canFam3.chr3              C 0 C 0
e micMur3.chr9              113268869 54 + 116334831 I
e proCoq1.NW_012142813v1        13843 359 +     80520 I
e aotNan1.NW_018505940v1     40644116 348 +  42888418 I
e dasNov3.JH570731            1797387 0 +   3943991 C

a score=422393.000000
s hg38.chr15_KI270850v1_alt    334528 40 +    430880 CTAAGCATGGAA-GGACTGCTGCTGGTGTCCTAAGAGGTCC
s panTro5.chr15              63487946 40 +  83230942 CTAAGCATGGAA-GGACTGCTGCTGGTGTCCTAAGAGGTCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445297 40 +  99763055 CTAAGCATGGAA-GGACTGCTGCTGGTGTCCTAAGAGGTCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45207 40 -   1709092 CTAAGCATGGAT-GGACTGCTGCTGGTGTCCTAAGAGGTCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17197712 40 - 121039945 CTAAGCATGGAT-GGACTGCTGCTGGTGTCCTAAGAGGTCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60885900 40 + 169600520 CTAAGCATGGAT-GGACTGCTGCTGGTGTCCTAAGAGGTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108412608 40 - 171882078 CTAAGCATGGAT-GGACTGCTGCTGGTGTCCTAAGAGGTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        23059 40 -   2311642 CTAAGCATGGAT-GGACTGCTGCTGGTGTCCTAAGAGGTTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        21214 40 -   1987038 CTAAGCATGGAT-GGACTGCTGCTGGTGTCCTAAGAGGTTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21101754 40 -  24206276 CTAAGCATGGAT-GGACTGCTGCTGGTGTCCTAAGAGGTTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        16938 40 -   1397330 CTAAGCATGGAT-GGACTGCTGCTGGTGTCCTAAGAGGTTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        40211 40 -   1784207 CTAAGCATGGAT-GGACTGTTGCTGGTGTCCTAAGAGGTTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237179 39 + 158406734 CTAAGCATGGATGGGACTA--GGTGGTATCCTAAGATACCC
i calJac3.chr6              C 0 I 11
s saiBol1.JH378108           50472936 39 +  54856640 CTGAGCATGGATGGGACTA--GGTGGTGTCCTAAGACACCC
i saiBol1.JH378108          C 0 I 11
s cebCap1.NW_016107610v1       616577 39 -   2910086 CTAAGCATGGATGGGACTA--GGTGGTATCCTAAGATGCCC
i cebCap1.NW_016107610v1    C 0 I 11
s micMur3.chr9              113268923 37 + 116334831 CTAAGCATGGAT-GGACTGCTACTG---TCCTAAGAGGCCC
i micMur3.chr9              I 54 C 0
s otoGar3.GL873530             631194 37 -  36342412 CAATGCATGGCT-GGACTGCTCCAG---TCCTCAGAGGCCC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81348980 36 + 145441459 CTAAGCATGGAT-GGATTGCTGGAG----TCTGGAAGGCTC
i mm10.chr7                 C 0 I 1
s canFam3.chr3               54407238 36 +  91889043 CCAAGCATGGTT-G----ACTGCTAGTGTCTGAATAGGCCT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1797387 26 +   3943991 CTAAGCATGGAT-GGACT---GCTGGGGTC-----------
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        13843 359 +     80520 I
e aotNan1.NW_018505940v1     40644116 348 +  42888418 I

a score=204235.000000
s hg38.chr15_KI270850v1_alt    334568 13 +    430880 CAAACTTCCCCTA
s panTro5.chr15              63487986 13 +  83230942 CAAACTTCCCCTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445337 13 +  99763055 CAAACTTCCCCTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45247 13 -   1709092 CAAACTTCCCCTA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17197752 13 - 121039945 CAGACTTCCCCTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60885940 13 + 169600520 CAAACTTCCCCTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108412648 13 - 171882078 CAAACTTCCCCTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        23099 13 -   2311642 CAAACTTCCCCTA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        21254 13 -   1987038 CAAACTTCCCCTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21101794 13 -  24206276 CAAACTTCCCCTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        16978 13 -   1397330 CAAACTTCCCCTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        40251 13 -   1784207 CAAACTTCCCCTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237229 13 + 158406734 CAAACTTCTCCTA
i calJac3.chr6              I 11 C 0
s saiBol1.JH378108           50472986 13 +  54856640 CAAACTTCCCCTA
i saiBol1.JH378108          I 11 C 0
s cebCap1.NW_016107610v1       616627 13 -   2910086 CAAACTTCCCCTA
i cebCap1.NW_016107610v1    I 11 C 0
s aotNan1.NW_018505940v1     40644464 13 +  42888418 CAAACATCCCCTA
i aotNan1.NW_018505940v1    I 348 C 0
s micMur3.chr9              113268960 13 + 116334831 CAAACTTCCCCTA
i micMur3.chr9              C 0 C 0
s otoGar3.GL873530             631231 13 -  36342412 TAAACTTCCCCTA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81349017 13 + 145441459 CAAACATCTCATA
i mm10.chr7                 I 1 I 706
s canFam3.chr3               54407274 11 +  91889043 CAAACTTCCCA--
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1797413 12 +   3943991 CGAACTTCCCCA-
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        13843 359 +     80520 I

a score=17290.000000
s hg38.chr15_KI270850v1_alt    334581 1 +    430880 A
s panTro5.chr15              63487999 1 +  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445350 1 +  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45260 1 -   1709092 A
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17197765 1 - 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60885953 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108412661 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        23112 1 -   2311642 A
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        21267 1 -   1987038 A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21101807 1 -  24206276 A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        16991 1 -   1397330 A
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        40264 1 -   1784207 A
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237242 1 + 158406734 A
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50472999 1 +  54856640 A
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       616640 1 -   2910086 A
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40644477 1 +  42888418 A
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113268973 1 + 116334831 A
i micMur3.chr9              C 0 I 346
s otoGar3.GL873530             631244 1 -  36342412 A
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54407285 1 +  91889043 A
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1797425 1 +   3943991 A
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        13843 359 +     80520 I
e mm10.chr7                  81349030 706 + 145441459 I

a score=2702826.000000
s hg38.chr15_KI270850v1_alt    334582 230 +    430880 CAC----CTGtcaaaggatgatact-gactagcagcattgacaccacttggatacttgttggacacatggaatctcagggtccgccccaaacccactg-aatcagaatct----------aagatcctcaggtgatgtgtctgta-attaaggtttgagaagcactg-CCAAACACATCCAGATCCACATTCCATCACCCAGGAACATTCAATAGAAAGCCACCTCGCTGCTTTCTGCCTGTCGCTGA
s panTro5.chr15              63488000 230 +  83230942 CAC----CTGtcaaaggatgatact-gactagcagcattgacaccacttggatacttgttggacacatggaatctcagggtccgccccaaacccactg-aatcagaatct----------aagatcctcaggtgatgtgtctgta-attaaggtttgagaagcactg-CCAAACACATCCAGATCCACATTCCATCACCCAGGAACATTCAATAGAAAGCCACCTCGCTGCTTTCTGCCTGTCGCTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445351 230 +  99763055 CAC----CTGtcaaaggatgatact-gactagcagcattgacaccacttggatacttgttggacacatggaatctcagggtccgccccaaacccactg-aatcagaatct----------aagatcctcaggtgatgtgtctgta-attaaggtttgagaagcactg-CCAAACCCATCCAGATCCACATTCCATCACCCAGGAACATTCAATAGAAAGCCACCTCGCTGCTTTCTGCCTGTCGCTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45261 230 -   1709092 CAC----CTGtcaaaggatgatact-gactagcagcactgacaccacttggatacttgttggacacatggaatctcagggtccgccccaaacccactg-aatcagaatct----------aagatcctcaggtgatgtgtctgta-attaaggtttgagaagcactg-CCAAACACATCGAGATCCACATTCCATCACCCAGGAACATTCAATAGAAAGCCACCTCGTTGCTTTCTGCCTGTCGCTGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17197766 230 - 121039945 TAC----CTGtcaaaggatgatgct-gactagcaacactgacaccacttggatgcttgttggacacacggaatctcagggtccgccccaaacccactg-aatcagaatct----------aagatcctcaggtgatgtgtctgta-attaagatttgagaagcactg-CCAAACACATCCAGATCCACGTTCCATCACCCAGGAACATTCAATAGAAAGCCACCTCGCTGCTTTCTGCCTGTCACTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60885954 230 + 169600520 CAC----CTGtcaaaggatgatgct-gactagcagcactgacaccacttggatacttgttggaaacatggaatctcagggtccatcccaaacccatcg-aatcagaatct----------aagatcctcaggtgatatgtctgta-attaaggtttgagaagcactg-CCAAACGCATCCAGATCCACATTCCATCACCCAGGAACATTCAATAGAAAGCCACCTCGCTGCTTTCTGCCTGTCACTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108412662 230 - 171882078 CAC----CTGtcaaaggatgatgct-gactagcagcactgacaccacttggatacttgttggaaacatggaatctcagggtccatcccaaacccatcg-aatcagaatct----------aagatcctcaggtgatgtgtctgta-attaaggtttgagaagcactg-CCAAACGCATCCAGATCCACATTCCATCACCCAGGAACATTCAATAGAAAGCCACCTCGCTGCTTTCTGCCCGTCACTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        23113 230 -   2311642 CAC----CTGtcaaaggatgatgct-gactagcagcactgacaccacttggatacgtgttggaaacatggaatctcagggtccatcccaaacccatcg-aatcagaatct----------aagatcctcaggtgatgtgtctgta-attaaggtttgagaagcactg-CCAAACGCATCCAGATCCACATTCCATCACCCAGGAACATTCAATAGAAAGCCACCTCGCTGCTTTCTGCCTGTCACTGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        21268 226 -   1987038 CAC----CTGtcaaaggatgatgct-gactagcagcactgacaccacttggatacttgttggaaacatggaatctcaggg----tcccaaacccaccg-aatcagaatct----------aagatcctcaggtgatgtgtctgta-attaaggtttgagaagcactg-CCAAACACATCCAGATCCACATTCCATCACCCAGGAACATTCAATAGAAAGCCACCTCGCTGCTTTCTGCCTGTCACTGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21101808 230 -  24206276 CAC----CTGtcaaaggatgatgct-gactagcaccactgacaccacttggatacttgttggaaacacggaatctcagggtccgtcccaaacccaccg-aatcagaatct----------aagatcctcaggtgatgtgtctgta-attaagggttgagcagcactg-CCAAACACATCCAGATCCACATTCCATCACCCAGGAACATTCAATAGAAAGCCACCTCGCTGCTTTCTGCCTGTCACTGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        16992 226 -   1397330 CAC----CTGtcaaaggatgatgct-gactagcagcactgacaccacttggatacttgttggaaacatggaatctcagg----gtcccaaacccaccg-aatcagaatct----------aagatcctcaggtgatgtgtctgta-attaaggtttgagaagcactg-CCAAACACATCCAGATCCACATTCCATCACCCAGGAACATTCAATAGAAAGCCACCTCGCTGCTTTCTGCCTGTCACTGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        40265 230 -   1784207 CAC----CTGtcaaaagatgatgct-gactagcagcactgacaccacttggatacttgttggaaacatggaatctcagggtccgccccaaatccacca-aatcagaatct----------aagatcctcaggtgatgtatctgta-attaaggtttgagaagcactg-CCAAACACATCCAGATCCACATTCCATCACCCAGGAACATTCAATAGAAAGCCAGCTCGCTGCTTTCTGCCTATCACTGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237243 240 + 158406734 CAC----CTGtcaaaggatgatgct-gactagcagcactaacaccacttggatagttgttggaaacatggaatctcaggatcaacccgaaacccacca-aatcagaatatgcatttaaacaagatcctcaggtgatatatctgca-attaaggtttgagaagcactg-CCAAACACATCCAGATCCATGCTCCACTACCCAGAAGCAGTCAACAGAAAGCAGCCTTGCTGCTTTCTGCCTGTTGCTGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50473000 240 +  54856640 CAC----CTGGcaaaggatgatgct-gactagcagcactaacaccgcttggatacttgctggaaacatggaatctcagaatcaacccgaaacccacca-aatcagaatctgcatttaaacaagatcctcaggtgatgtgtctgca-attaaggtctgagaagcactg-CCAAACACATCCAGATCCATGCTCCACCACCCAGAAACAGTCAACAGAAAGCGGCCTTGCTGCTTTCTGCCTGTTGCCGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       616641 239 -   2910086 CAC----GTGAcaaaggatgctgct-gactagcagcactaacaccgcttggatacttgttggaaacatagaatctcaggatcag-tggaaacccacca-aatcagaatctgcatttaaacaagatcctcaggtgatgtatctgaa-attaaggtttgagaagcactg-CGAAACACATCCAGATCCATGCTCCACCATTCAGAAACAGTCAACAGAAAGCAGGCTCGCTGCTTTCTGCCTGTTGCTGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40644478 237 +  42888418 CAC----CTGTCAAATGATGATGCT-gactagcagcactaacaccacttggatacttgttggaaatatggaatctcaggatcaacctgaaacccacca-aatcaaaatctgcatttaaacaagatcctcaggtgatgtatctaca-attaaggtttgagaagcactg-CCAAACACATCCAGATCCATGCTCCACCACCCAGAAACAGTCAACAGAAAGCAGCTT---TGCTTTCTGCCTGTTGCTGA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             631245 233 -  36342412 TAC----TTACcaaagtgtgatgaa-gagcagcaacactgacaccaactggcaactagttagaaacac-gaatctcacgcttca-cccaaacccattgaaaacagaatct-gctttaaataagatcctcaggtgatgtttatgtacattaaagtttgagaagcactg-CCCAGCAC------ACCCATGCTCCACCACCTAGCAAACATCAAAGGAAAGCTGCTTCACTGCTAGGTGCCTGTTTCTTA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54407286 238 +  91889043 CTC----TTTGcaaagtatgataccaggccaaccacactgacatcacttggaaacttgtcagaaataaggaatctcaggttccattctaaacccattg-agtcagaatctgcatttaaacaagatcctcaaatg-tgtgttc----attaacatatgagaaactctgCCCAAACACACCCGATCCCTGCCCCCACCACCCAGGAACACTCAACAGGAAGCTGCCAAACTGCTTGCTGCCCATTTCTGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1797426 217 +   3943991 CACTTCACTGttaaagtgtggtgca-gaccagcaatgctggcgtcatatgagaactcatcagacaca--ggatcttagaccccaccttagacccactg-aaccagattctgcatttaaa-caaatcctcaggtgatgtgt--aac-attaaaattttaggagcactg-C---------------------TCCACC-CCCAGAAACATTCAGCAGAAAGCTGCCACACTGCTTTCTGCCCGTTTCTGA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113268974 346 + 116334831 I
e proCoq1.NW_012142813v1        13843 359 +     80520 I
e mm10.chr7                  81349030 706 + 145441459 I

a score=636287.000000
s hg38.chr15_KI270850v1_alt    334812 49 +    430880 CACCTGTGGGTACAGCCCAGATGCAAA---TATCAAAGTCGTCCAGAAGTTC
s panTro5.chr15              63488230 49 +  83230942 CACCTGTGGGTACAGCCCAGATGCAAA---TATCAAAGTCATCCAGAAGTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445581 49 +  99763055 CACCTGTGGGTACAGCCCAGATGCAAA---TATCAAAGTCGTCCAGAAGTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45491 49 -   1709092 CACCTGTGGGTACAGCCCAGGTGCAAA---TATCAAAGTCGTCCAGAAGTTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17197996 49 - 121039945 CACCTGTGGGTACAGCCCAGGTGCAAA---TATCAAAGTCGTCCAGAAGTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886184 49 + 169600520 CACCTGTGGGTACAGCCCAGGTGCAAA---TATCAAAGTCGTCCAGAAGTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108412892 49 - 171882078 CACCTGTGGGTACAGCCCAGGTGCAAA---TATCAAAGTCGTCCAGAAGTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        23343 43 -   2311642 CA------GGTACAGCCCAGGTGCAAA---TATCAAAGTTGTCCAGAAGTTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        21494 49 -   1987038 CACCTGTGGGTACAGCCCAGGTGCAAA---TATCAAAGTCGTCCAGAAGTTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102038 49 -  24206276 CACCTGTGGGTACAGCCCAGGTGCAAA---TATCAAAGTTGTCCAGAAGTTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17218 49 -   1397330 CACCTGTGGGTACAGCCCAGGTGCAAA---TATCAAAGTCGTCCAGAAGTTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        40495 49 -   1784207 CACCTGTGGGTACAGCCCGGGTGCAAA---TATCAAAGTCGTCCAGAAGTTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237483 49 + 158406734 CACCTGTGGGAACAGCCCAGGTGCAAA---TATCAAAGTAGTCTAGTAGTTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50473240 49 +  54856640 CACCTGTGGGAACAGCCCAGATGCAAA---TATCAAAGTAGTCTAGTAGTTC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       616880 49 -   2910086 CACCTGTGGGAACAGCCCAGGTGCAAA---TATCAAAGTAGTCTAGTAGTTC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40644715 48 +  42888418 CACCTGTGGGAAAAG-CCAGGTGCAAA---TATCAAAGTAGTCTAGTAGTTC
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        14202 49 +     80520 CACCTGTGTGTACAGCCCAGGTGCAAA---TTTCAAAGCAGTCCAGAGGTTC
i proCoq1.NW_012142813v1    I 359 I 28
s otoGar3.GL873530             631478 49 -  36342412 CATCTGTGGATATAGCCCAGGTGCAAA---TATCAAAGCAGTCCAGAGGTTC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54407524 52 +  91889043 CAACTGTGGATACAAACTCGGTACGTATCGTATCTCAAGCATCCAGAGGTTC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1797643 44 +   3943991 CAAC-ATGGACTCAGCCCAG-TACAAG---TATCAATGCCATCCAGTGC---
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113268974 346 + 116334831 I
e mm10.chr7                  81349030 706 + 145441459 I

a score=107117.000000
s hg38.chr15_KI270850v1_alt    334861 16 +    430880 AGATGTAAAGGAGGAC
s panTro5.chr15              63488279 16 +  83230942 AGATGTAAAGGAGGAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445630 16 +  99763055 AGATGTAAAGGAGGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45540 16 -   1709092 AGATGTAAAGGAGGAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198045 16 - 121039945 AGATGTAAAGGAGGAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886233 16 + 169600520 AGATGCAAAGGAGGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108412941 16 - 171882078 AGATGCAAAGGAGGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        23386 16 -   2311642 AGATGCAAAGGAGGAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        21543 16 -   1987038 AGATGCAAAGGAGGAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102087 16 -  24206276 AGATGCAAAGGAGGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17267 16 -   1397330 AGATGCAAAGGAGGAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        40544 16 -   1784207 AGATGCAAAGGAGGTC
i colAng1.NW_012117110v1    C 0 I 19
s calJac3.chr6               22237532 13 + 158406734 AGATGTAGAGGAG---
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50473289 13 +  54856640 AGATGTAAAGGAG---
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       616929 13 -   2910086 AGATGTAAAGGAG---
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40644763  3 +  42888418 AGA-------------
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             631527 15 -  36342412 TGAGATAAAGAAGGG-
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54407576 14 +  91889043 ACAAGAGAAGAAGG--
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1797687 13 +   3943991 AGAAGTAAAGAAA---
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113268974 346 + 116334831 I
e proCoq1.NW_012142813v1        14251 28 +     80520 I
e mm10.chr7                  81349030 706 + 145441459 I

a score=27965.000000
s hg38.chr15_KI270850v1_alt    334877 5 +    430880 ---GAGGC
s panTro5.chr15              63488295 5 +  83230942 ---GAGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445646 5 +  99763055 ---GAGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45556 5 -   1709092 ---GAGGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198061 5 - 121039945 ---GAGTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886249 5 + 169600520 ---GAAGC
i rheMac8.chr7              C 0 I 13
s macFas5.chr7              108412957 5 - 171882078 ---GAAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        23402 5 -   2311642 ---GAAGC
i macNem1.NW_012011945v1    C 0 I 13
s cerAty1.NW_012002657v1        21559 5 -   1987038 ---GAAGC
i cerAty1.NW_012002657v1    C 0 I 13
s chlSab2.chr29              21102103 5 -  24206276 ---GAAGC
i chlSab2.chr29             C 0 I 13
s manLeu1.NW_012106908v1        17283 5 -   1397330 ---GAAGC
i manLeu1.NW_012106908v1    C 0 I 13
s calJac3.chr6               22237545 5 + 158406734 ---GAGGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50473302 5 +  54856640 ---GAGGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       616942 5 -   2910086 ---GAGGC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40644766 4 +  42888418 ----AGGC
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1797700 5 +   3943991 ATGGA---
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113268974 346 + 116334831 I
e proCoq1.NW_012142813v1        14251 28 +     80520 I
e mm10.chr7                  81349030 706 + 145441459 I
e canFam3.chr3               54407590 0 +  91889043 C
e otoGar3.GL873530             631542 0 -  36342412 C
e colAng1.NW_012117110v1        40560 19 -   1784207 I

a score=50518.000000
s hg38.chr15_KI270850v1_alt    334882 12 +    430880 ATCCTCCTTTAC
s panTro5.chr15              63488300 10 +  83230942 --CCTTGAGTAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445651 10 +  99763055 --CCTTGAGTAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45561 10 -   1709092 --CCTTGAGTAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198066 10 - 121039945 --CCTTGAGTAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108412962 10 - 171882078 --CCTTGAGTAG
i macFas5.chr7              C 0 C 0
s calJac3.chr6               22237550 10 + 158406734 --CCTTGAGTAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50473307 10 +  54856640 --CCTTGAGTAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       616947 10 -   2910086 --CCTTGAGTAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40644770 10 +  42888418 --CCTTGAGTAG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             631542 12 -  36342412 GCCCCTGAGTAG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54407590 12 +  91889043 ATCCTTGAGTGG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1797705 12 +   3943991 TTCCTTGGGTAG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113268974 346 + 116334831 I
e proCoq1.NW_012142813v1        14251 28 +     80520 I
e mm10.chr7                  81349030 706 + 145441459 I
e colAng1.NW_012117110v1        40560 19 -   1784207 I
e manLeu1.NW_012106908v1        17288 13 -   1397330 I
e chlSab2.chr29              21102108 13 -  24206276 I
e cerAty1.NW_012002657v1        21564 13 -   1987038 I
e macNem1.NW_012011945v1        23407 13 -   2311642 I
e rheMac8.chr7               60886254 13 + 169600520 I

a score=3300.000000
s hg38.chr15_KI270850v1_alt    334894 2 +    430880 -AG
s panTro5.chr15              63488310 2 +  83230942 -AG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445661 2 +  99763055 -AG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45571 2 -   1709092 -AG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198076 2 - 121039945 -AG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108412972 2 - 171882078 -AG
i macFas5.chr7              C 0 I 1
s calJac3.chr6               22237560 2 + 158406734 -AG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50473317 2 +  54856640 -AT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       616957 2 -   2910086 -AA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40644780 2 +  42888418 -AG
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        14279 2 +     80520 -AG
i proCoq1.NW_012142813v1    I 28 C 0
s otoGar3.GL873530             631554 2 -  36342412 -AA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54407602 2 +  91889043 -GG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1797717 2 +   3943991 CA-
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113268974 346 + 116334831 I
e mm10.chr7                  81349030 706 + 145441459 I
e colAng1.NW_012117110v1        40560 19 -   1784207 I
e manLeu1.NW_012106908v1        17288 13 -   1397330 I
e chlSab2.chr29              21102108 13 -  24206276 I
e cerAty1.NW_012002657v1        21564 13 -   1987038 I
e macNem1.NW_012011945v1        23407 13 -   2311642 I
e rheMac8.chr7               60886254 13 + 169600520 I

a score=624863.000000
s hg38.chr15_KI270850v1_alt    334896 54 +    430880 AAAAATCAGCTTAGAAGGCTTCAGGGTTAG-GCAGCTGAGCCTGGCTCCCACGTG
s panTro5.chr15              63488312 54 +  83230942 AAAAATCAGCTTAGAAGGCCTCAGGGTTAG-GCAGCTGAGCCTGGCTCCCACATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445663 54 +  99763055 AAAAATCAGCTTAGAAGGCCTCAGGGTTAG-GCAGCTGAGCCTGGCTCCCACATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45573 54 -   1709092 AAAAATCAGCTTAAAAGGCCTCAGGGTTAG-GCAGCTGAGCCTGGCTCCCACGTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198078 53 - 121039945 AAAAATCCAC-TAGAAGGCCTCAGGGTTAG-GCAGCTGAGCCTGGCTCCCACGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886267 55 + 169600520 AAAAATCAGCTTAGAAGGCCTCAGGGTTAGAGCAGCTGAGCCTGGCTTCTACGTA
i rheMac8.chr7              I 13 C 0
s macFas5.chr7              108412975 55 - 171882078 AAAAATCAGCTTAGAAGGCCTCAGGGTTAGAGCAGCTGAGCCTGGCTTCTACGTA
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011945v1        23420 55 -   2311642 AAAAATCAGCTTAGAAGGCCTCAGGGTTAGAGCAGCTGAGCCTGGCTTCTACGTA
i macNem1.NW_012011945v1    I 13 C 0
s cerAty1.NW_012002657v1        21577 55 -   1987038 AAAAATCAGCTTAGAAGGCCTCAGGGTTAGAGCAGCTGAGCCTGGCTTCTACGTA
i cerAty1.NW_012002657v1    I 13 C 0
s chlSab2.chr29              21102121 55 -  24206276 AAAAATCAGCTTAGAAGGCCTCAGGGTTAGAGCAGCTGAGCCTGGCTTCTACGTA
i chlSab2.chr29             I 13 C 0
s manLeu1.NW_012106908v1        17301 55 -   1397330 AAAAATCAGCTTAGAAGGCCTCAGGGTTAGAGCAGCTGAGCCTGGCTTCTACGTA
i manLeu1.NW_012106908v1    I 13 C 0
s colAng1.NW_012117110v1        40579 55 -   1784207 AAAAATCAGCTTAGAAGGCCTCAGGGTTAGAGCAGCTGAGCCTGGCTTCTACGTA
i colAng1.NW_012117110v1    I 19 C 0
s calJac3.chr6               22237562 52 + 158406734 AAAAATAAGCTTAGAAGGCCTCAGGGTTAGAGCAGCTGAGCCTGGCTCCTAG---
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50473319 55 +  54856640 AAAAATAAGCTTAGAAGGCCTCAGGGTTAGAGCAGCTGAGCCTGGCTCCTAGGTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       616959 55 -   2910086 AAAAATAAGCTTAGAAGGCCTCAGGGTTAGAGCAGCTGAGCCTGGCTCCTAGGTA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40644782 54 +  42888418 AAAAAATAACTTAGAAGGCCTCAGGGTTAGAGCAGCTGA-CCTGGCTCCTAGGTG
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        14281 55 +     80520 AAAAATCAGTCTAGAAGGCCTCAGAGTTATAGCAGCAGCACCTGGCTCATAGGTC
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             631556 28 -  36342412 AAAGATCAGTCTAGAA---------------------------GGCTCACAGGTA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54407604 54 +  91889043 AAAGATCAATGGAGAAAG-GTCTGAGTTAGGACCACAGTGCTTGGCTCATAGGTA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1797719 55 +   3943991 GACAATCAGTCTAACAGGCCTCAGCATTAGAGCAGCAGTACCTGGCATGGAGGCA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113268974 346 + 116334831 I
e mm10.chr7                  81349030 706 + 145441459 I

a score=552986.000000
s hg38.chr15_KI270850v1_alt    334950 40 +    430880 CTGCTGACCACACCCAGCCAGGCTTCCATCATCTAC-AAAA
s panTro5.chr15              63488366 40 +  83230942 CTGCTGACCACACCCAGCCAGGCTTCTATCATCTAC-AAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445717 40 +  99763055 CTGCTGACCACACCCAGCCAGGCTTCTATCATCTAC-AAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45627 41 -   1709092 CTGCTGACCACACCCAGCCAGGCATCTATCATCTACAAAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198131 40 - 121039945 CTGCTGACCACACCCAGCCAGGCTTCTATCATCTAC-AAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886322 40 + 169600520 CTGCTGATCATACCCAGTCAGGCTTCTATCATCTAT-AAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413030 40 - 171882078 CTGCTGATCATACCCAGTCAGGCTTCTATCATCTAT-AAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        23475 40 -   2311642 CTGCTGATCATACCCAGTCAGGCTTCTATCATCTAT-AAAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        21632 40 -   1987038 CTGCTGATCATACCCAGTCAGGCTTCTATCATCTAT-AAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102176 40 -  24206276 CTGCTGATCATACCCAGTCAGGCTTCTATCATCTAT-AAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17356 40 -   1397330 CTGCTGATCATACCCAGTCAGGCTTCTATCATCTAT-AAAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        40634 40 -   1784207 CTGCTGATCACACCCAGTCAGGCTTCTATCATCTAT-AAAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237614 35 + 158406734 --GCTGAACACACCCAGGCAGGCTTCTATCACCTAC-A---
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50473374 37 +  54856640 CTGCTGAACATACCCAGGCAGGCCTCTATCATCTAC-A---
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       617014 37 -   2910086 CTGCTGAACACACCCAGGCAGGCTTCTATCATCTAC-A---
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40644836 37 +  42888418 CCGCTGAACACACCCAGGCAGGCTTCTATCATCTAC-A---
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113269320 40 + 116334831 CTGCTGACCACACCCACCCAGGTTTCTATCATCTAT-AAAA
i micMur3.chr9              I 346 I 174
s proCoq1.NW_012142813v1        14336 40 +     80520 CTGCTGGCCACACCCACCCAGGTTTCTATCATCTAC-AAAA
i proCoq1.NW_012142813v1    C 0 I 1
s otoGar3.GL873530             631584 40 -  36342412 TTGCTGACCACACCCACTCAGGTTTCTATCATCTAC-AAAT
i otoGar3.GL873530          C 0 I 1
s canFam3.chr3               54407658 40 +  91889043 CTGCTAACCATACCCATCCAGGGTCCTTTCATCTGC-AGAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1797774 40 +   3943991 CTGATGACAACACCCACCGAGGTTTCTAGTTTTCTC-AGAG
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81349030 706 + 145441459 I

a score=516483.000000
s hg38.chr15_KI270850v1_alt    334990 43 +    430880 CCACCTCTC-AGCAATAGTGGCATACTGCATAGCAATATCCCAG
s panTro5.chr15              63488406 43 +  83230942 CCACCTCTC-AGCAATAGTGGCATACTGCATAGCAATATCCCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445757 43 +  99763055 CCACCTCTC-AGCAATAGTGGCATACTGCATAGCAATATCCCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45668 43 -   1709092 CCACCTCTC-AGCAATAGTGGCATACTGCATAGCAATATCCCAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198171 43 - 121039945 CCACCTCTC-AGCAATAGTGGCATACTGCATAGCAACATCCCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886362 43 + 169600520 CCACCTCTC-AGCAATAGTGGCATACTGCATAGCAACATCCCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413070 43 - 171882078 CCACCTCTC-AGCAATAGTGGCATACTGCATAGCAACATCCCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        23515 43 -   2311642 CCACCTCTC-AGCAATAGTGGCATACTGCATAGCAACATCCCAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        21672 43 -   1987038 CCACCTCTC-AGCAATAGTGGCATACTGCATAGCAACATCCCAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102216 43 -  24206276 CCACCTCTC-AGCAATAGTGGCATACTGCATAGCAACATCCCAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17396 43 -   1397330 CCACCTCTC-AGCAATAGTGGCATACTGCATAGCAACATCCCAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        40674 43 -   1784207 CCACCTCTC-AGCAATAGTGGCATACTGCATAGCAACATCCCAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237649 31 + 158406734 -------------AATAGTGGCATACTGCATAGCAACATCCCAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50473411 31 +  54856640 -------------AATAGTGGGATACTGCATAGCAACATCCCAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       617051 31 -   2910086 -------------AATAGTGGCATACTGCATAGCAACATCCCAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40644873 31 +  42888418 -------------AATAGTGGCATACTGCATAACAACATCCCAG
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        14377 43 +     80520 CCCTCAGTG-AGCAATAGTGCCATACTGCACAGCAACATCTCAG
i proCoq1.NW_012142813v1    I 1 I 129
s otoGar3.GL873530             631625 43 -  36342412 CTCTTTGTC-AACAGCAGCGACATACTACATGGCAACATCGCAG
i otoGar3.GL873530          I 1 C 0
s canFam3.chr3               54407698 42 +  91889043 --ACCTGTTAAGTAGTTGTGCCACATTGCACACCAACATCCCAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1797814 37 +   3943991 ------ATC-AGTAATAGTGTCCTACTGCACAGCGACATCCCAG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113269360 174 + 116334831 I
e mm10.chr7                  81349030 706 + 145441459 I

a score=1605856.000000
s hg38.chr15_KI270850v1_alt    335033 156 +    430880 GCAAGAAAAAGACCAAAGTATAAAGACTCAATTCAACATATTT--TCTTAAGAGTTCTGGATCAAGCTATCTAAAGTATGTCTGTCCC-GGTCTGACCTTCAGCAAACATTACTGCTGCCT-CCTCTATGC--TCTCAGAC-ACCACAGGGTACCTCAGAACT
s panTro5.chr15              63488449 157 +  83230942 GCAAGAAAAAGACCAAAGTATAAAGACTCAATTCAACATATTT--TCTTAAGAGTTCTGGATCAAGCTATCTAAAGTATGTCTGTCCCTGGTCTGACCTTCAGCAAACATTACTGCTGCCT-CCTCTATGC--TCTCAGAC-ACCACAGGGTACCTCAGAACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445800 157 +  99763055 GCAAGAAAAAGACCAAAGTATAAAGACTCAATTCAACATATTT--TCTTAAGAGTTCTGGATCAAGCTATCTAAAGTATGTCTGTCCCTGGTCTGACCTTCAGCAAACATTACTGCTGCCT-CCTCTATGC--TCTCAGAC-ACCACAGGGTACCTCAGAACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45711 157 -   1709092 GCAAGAAAAAGACCAAAGTATAAAGACTCAATTCAACATATTT--TCTTAAGAGTTCTGGATCAAGCTATCTAAAGTATGTCTGTCCCTGGTCTGACCTTCAGCAAACATTACTGCTGCCT-CCTCTATGC--TCTCAGAC-ACCACAGGGTACCTCAGAACT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198214 157 - 121039945 GCAAGAAAAAGGCCAAAGTATAAAGACTCAATTCAACATATTT--TCTTAAGAATTCTGGATCAAGCTATCTAAAGTGTGTCTGTCCCTGGTCTGACCTTCAGCAAACATTACTGCTGCCT-CCTCCATGC--TCTCAGAC-ACCACAGGGTACCTCAGAACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886405 153 + 169600520 GCAAGAAAAAGGCCAAAGTATAAAGACTCAATTCAACATATTT--TCCTAAGAGTTCTGGATAAAGCTATCTAAAGTG----TGTCCCTGGTTTGACCTTCAGCAAACATTACTGCTGCCT-CCTCTATGC--TCTCAGAC-AACACAAGGTACCTCGGAACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413113 153 - 171882078 GCAAGAAAAAGGCCAAAGTATAAAGACTCAATTCAACATATTT--TCCTAAGAGTTCTGGATAAAGCTATCTAAAGTG----TGTCCCTGGTTTGACCTTCAGCAAACATTACTGCTGCCT-CCTCTATGC--TCTCAGAC-AACACAAGGTACCTCGGAACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        23558 153 -   2311642 GCAAGAAAAAGGCCAAAGTATAAAGACTCAATTCAACATATTT--TCCTAAGAGTTCTGGATAAAGCTATCTAAAGTG----TGTCCCTGGTTTGACCTTCAGCAAACATTACTGCTGCCT-CCTCTATGC--TCTCAGAC-AACACAAGGTACCTCGGAACT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        21715 151 -   1987038 GCAAGAAAAAGGCCAAAGTATAAAGACTCAATTCAACATATTT--TCCTAAGAGTTCTGGATAAAGCTATCTAAAGTG----TGTCCCTGGTTTGACCTTCAGCAAACATTACTGCTGCCT-CCTCTATGC--TCTCAG---AACACAAGGTACCTCGGAACT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102259 153 -  24206276 GCAAGAAAAAGGCCAAAGTATAAAGACTCAATTCAACATATTT--TCCTAAGAGTTCTGGATAAAGCTATCTAAAGTG----TGTCCCTGGTTTGACCTTCAGCAAACATTACTGCTGCCT-CCTCTATGC--TCTCAGAC-AACACAAGGTACCTCGGAACT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17439 151 -   1397330 GCAAGAAAAAGGCCAAAGTATAAAGACTCAATTCAACATATTT--TCCTAAGAGTTCTGGATAAAGCTATCTAAAGTG----TGTCCCTGGTTTGACCTTCAGCAAACATTACTGCTGCCT-CCTCTATGC--TCTCAG---AACACAAGGTACCTCGGAACT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        40717 153 -   1784207 GCAAGAAAAAGGCCAAAGTATAAAGACTCAATTCAACATATTT--TCCTAAGAGTTCTGGATAAAGCTATCTAAAGTG----TGTCCCCAGTTTGACCTTCAGCAAACATTACTGCTGCCT-CCTCTATGC--TCTCAGAC-ACCACAAGGTACCTCGGAACT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237680 151 + 158406734 GCAAG-AAAAGGCCAATGTCTAAAGACTCAATTCAACATGTTT--TCCCAAAAGTTTTGGGTCAAGCCATCCAAAGTG----TGTCACTGGTCTGACCCTCAGCAAACCTTACTTCT-CCT-CCTCTACAC--TTTCAGAT-ACCACAAGGTACCTCAGAACT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50473442 151 +  54856640 GCAAGAAAAAGGCCAAAGTATAAAGACTCAATTCAACATGTTT--TCCTAAAAGTTCTGGG-CAAGCCATCCAAAGTG----TGTCACTGGTCTGACCCTCAGCAAACCTTACTGCT-CCT-CCTCTATGC--TTTCAGAT-GCCACAAGTTACCTCAGAACG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       617082 151 -   2910086 GCAGA-AAAAGGCCAAAGTATAAAGACTCAATTCAACATGTTT--TCCCAAAAGTTCTGGGTCAAGCTATCCAAAGTG----TGTCACTGGTCTGACCCTCAGCAAACCTTACTGCT-CCT-CCTCTATGC--TTTCAGAT-ACCACAAGGTACCTCAGAACT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40644904 153 +  42888418 GCAAGAAAAAGGCCAAAGTATAAAGACTCAATTCAACATGTTT--TCCCAAAAGTTCTGTGTCAAGCCATCCAAAGTG----TATCACTGGTCTGACCCTCAGCAACACTTACTGCT-CCTCCCTCTATGC--TTTCAGAT-ACCACAAGATATCTCAGAACT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             631668  58 -  36342412 GCAAG--------------------GCTCCATTCAAAAAGCTT--TCCCAAGAGTTTTTGTTCAAG----------------TGttttt-----------------------------cct-tttc-------------------------------------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54407740 150 +  91889043 GCAATGGGAAGGTCAAAGTGTCAAGAC-----TCAACAGGCTT--TCCCAAGAGTTTTGCATCAAGCTG-CCAGAGCG----TTTCCCTGGCCTGACCATGAGGGAACATTACTGCTGCCT-CCTTTGTGCTTTCTCAGACAACCACGAGGTACTGGAGAGCA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1797851 149 +   3943991 GCAAG-GGAAGGCCAAAGTATGCTGATGCAATTCAACACACTTGCCCCCGAGAGTTTTGGGTCAAGCTACCTGTACTG----TGTCCCTGGTCTGACCATCAGTAAACACTACTGCTGCCC-CTT--------GTTCAGGCAACCAGGAGGTACTTCAAAACT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113269360 174 + 116334831 I
e proCoq1.NW_012142813v1        14420 129 +     80520 I
e mm10.chr7                  81349030 706 + 145441459 I

a score=45298.000000
s hg38.chr15_KI270850v1_alt    335189 3 +    430880 CCA
s panTro5.chr15              63488606 3 +  83230942 CCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445957 3 +  99763055 CCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45868 3 -   1709092 CCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198371 3 - 121039945 CCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886558 3 + 169600520 CCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413266 3 - 171882078 CCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        23711 3 -   2311642 CCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        21866 3 -   1987038 CCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102412 3 -  24206276 CCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17590 3 -   1397330 CCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        40870 3 -   1784207 CCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237831 3 + 158406734 TCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50473593 3 +  54856640 CCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       617233 3 -   2910086 CCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40645057 3 +  42888418 CCA
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        14549 3 +     80520 CCA
i proCoq1.NW_012142813v1    I 129 C 0
s canFam3.chr3               54407890 3 +  91889043 CCA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1798000 3 +   3943991 TCA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113269360 174 + 116334831 I
e mm10.chr7                  81349030 706 + 145441459 I
e otoGar3.GL873530             631726 0 -  36342412 C

a score=323981.000000
s hg38.chr15_KI270850v1_alt    335192 25 +    430880 ACATTC---AATGTCATGAACTTGGCAT
s panTro5.chr15              63488609 25 +  83230942 ACATTC---AATGTCATGAACTTGGCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445960 25 +  99763055 ACATTC---AATGTCATGAACTTGGCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45871 25 -   1709092 ACATTC---AATGTCATGAACTTGGCAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198374 25 - 121039945 ACATTC---AATGTCATGAACTTGGAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886561 25 + 169600520 ACATTC---AATGTCATGAAGTTGGCGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413269 25 - 171882078 ACATTC---AATGTCATGAAGTTGGCGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        23714 25 -   2311642 ACATTC---AATGTCATGAAGTTGGCGT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        21869 25 -   1987038 ACATTC---AATGTCATGAAGTTGGCGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102415 25 -  24206276 ACATTC---AATGTCATGAAGTTGGCGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17593 25 -   1397330 ACATTC---AATGTCATGAAGTTGCCGT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        40873 28 -   1784207 ACATTCAATAATGTCATGAAGTTGGCGT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237834 25 + 158406734 ACATTC---CATGTCATGATCTTGGCAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50473596 25 +  54856640 ACATTC---CATGTCATGATCTTGGCAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       617236 25 -   2910086 ACATAC---CATGTCATGATCTTGGCAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40645060 25 +  42888418 ACATTC---CATGTCATGATCTTGGCAT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113269534 25 + 116334831 ACATTC---AATGTCATGAACTTGGCAT
i micMur3.chr9              I 174 I 1
s proCoq1.NW_012142813v1        14552 25 +     80520 ACATTC---AATGTCATGAACTTGGCAC
i proCoq1.NW_012142813v1    C 0 I 1
s canFam3.chr3               54407893 24 +  91889043 ACCTTC---TA-GTGACAAATATGGCAC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1798003 25 +   3943991 ACATTC---CATGTGATGAACTTGACAT
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81349030 706 + 145441459 I
e otoGar3.GL873530             631726  0 -  36342412 C

a score=6392.000000
s hg38.chr15_KI270850v1_alt    335217 1 +    430880 A
s panTro5.chr15              63488634 1 +  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445985 1 +  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45896 1 -   1709092 A
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198399 1 - 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886586 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413294 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        23739 1 -   2311642 A
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        21894 1 -   1987038 A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102440 1 -  24206276 A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17618 1 -   1397330 A
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        40901 1 -   1784207 A
i colAng1.NW_012117110v1    C 0 C 0
s aotNan1.NW_018505940v1     40645085 1 +  42888418 A
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54407917 1 +  91889043 G
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1798028 1 +   3943991 G
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113269559 1 + 116334831 I
e proCoq1.NW_012142813v1        14577 1 +     80520 I
e mm10.chr7                  81349030 706 + 145441459 I
e calJac3.chr6               22237859 0 + 158406734 C
e cebCap1.NW_016107610v1       617261 0 -   2910086 C
e otoGar3.GL873530             631726 0 -  36342412 C
e saiBol1.JH378108           50473621 0 +  54856640 C

a score=12205.000000
s hg38.chr15_KI270850v1_alt    335218 3 +    430880 ACA
s panTro5.chr15              63488635 3 +  83230942 ACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445986 3 +  99763055 ACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45897 3 -   1709092 ACA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198400 3 - 121039945 ACt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886587 3 + 169600520 AAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413295 3 - 171882078 AAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        23740 3 -   2311642 AAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        21895 3 -   1987038 AAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102441 3 -  24206276 AAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17619 3 -   1397330 AAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        40902 3 -   1784207 AAA
i colAng1.NW_012117110v1    C 0 C 0
s aotNan1.NW_018505940v1     40645086 3 +  42888418 ACA
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1798029 3 +   3943991 ACA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113269559 1 + 116334831 I
e proCoq1.NW_012142813v1        14577 1 +     80520 I
e mm10.chr7                  81349030 706 + 145441459 I
e calJac3.chr6               22237859 0 + 158406734 C
e canFam3.chr3               54407918 0 +  91889043 C
e cebCap1.NW_016107610v1       617261 0 -   2910086 C
e otoGar3.GL873530             631726 0 -  36342412 C
e saiBol1.JH378108           50473621 0 +  54856640 C

a score=748524.000000
s hg38.chr15_KI270850v1_alt    335221 123 +    430880 A-----------tttttttttttt---gacacggagtctcgctct---g---tcccaggctgaagtgcagtggcgtgatctcgactcactgcaacctccgcctcctgggttcaagctattcgcctgcctcagcctcccaagta
s panTro5.chr15              63488638 124 +  83230942 A-----------tttttttttttt--tgacacggaatctccctct---g---tcccaggctgaagtgcagtggcgtgatctcgactcactgcaacctccgcctcctgggttcaagctattcgcctgcctcagcctcccaagta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80445989 123 +  99763055 A-----------tttttttttttt---gacacggaatctccctct---g---tcccaggctgaagtgcagtggcgtgatctcgactcactgcaacctccgcctcctgggttcaagctattcgcctgcctcagcctcccaagta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        45900 126 -   1709092 A-----------tttttttttttttttgacacggagtcttgctct---g---tcccaggctgaagtgcagtggcgtgatctcgactcactgcaacctccgcttcctgggttcaagctattcgcctgcctcagcctcccaagta
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198403 124 - 121039945 t-----------tttttttttttt--tgacacagagtctcgctct---g---tcccaggctgaagtacagtggtgtgatcttgactcactgcaacctccgcctcctgggttcaagctatccgcctgcctcagcctcccaagta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886590 134 + 169600520 AAA---Attttttttttttttttttttgacacggactctcgctct---g---ccctagactgaagtgcagtggtgtgatctcggctcactgcaacctctgcctcctgggttcaagctattcgcctgcctcagccttctgagta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413298 135 - 171882078 AAA--ttttttttttttttttttttttgacacggagtctcgctct---g---ccctagactgaagtgcagtggcgtgatctcggctcactgcaacctctgcctcctgggttcaagctattcgcctgcctcagccttctgagta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        23743 134 -   2311642 AAA---Attttttttttctttttttttgacacggagtctcgctct---g---ccctagactgaagtgcagtggcgtgatctcggctcactgcaacctctgcctcctgggttcaagctattcgcctgcctcagccttctgagta
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        21898 133 -   1987038 AAA---AAttttttttt-tttttttttgacacggagtctcgctct---g---ccctagactgaagtgcagtggcgtgatctcggctcactgcaacctccgcctcctgggttcaagctattcgcctgcctcagccttctgagta
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102444 134 -  24206276 AAA---tttttttttttttttttttttgacacggagtctcgctct---g---ccctagactgaagtgcagtggcgtgatctcggctcactgcaacctccgcctcctgggttcaagctattcgcctgcctcaccctcccgagta
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17622 133 -   1397330 AAA----AAttttttttttttttttttgacacggagtctcgctct---g---ccctagactgaagtgcagtggcgtgatctcggctcactgcaacctccgcctcctgggttcaagctattcgcctgcctcagccttctgagta
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        40905 128 -   1784207 AAA---------Attttttttatttttgacacggagtctcgctct---g---ccctagactgaagttcagtggcgtgatctcggctcactgcaacctccgcctcctgggttcaagctattcacctgcctcagcctcccgagta
i colAng1.NW_012117110v1    C 0 C 0
s aotNan1.NW_018505940v1     40645089 139 +  42888418 Attttttttttttttttttttttttttgagacggagtttcgctcttgat---acccaggctggagtgcaatggcgcgatctcggctcaccgcaacctccgc-tcctgggttcaggcaattctcctgcctcagccttctgagta
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             631726 117 -  36342412 ---------------ttttttttttttgaggcagagtcttactct---gtctccctagg-tagagtgctgtagca-------agctcacagcaaccttaaactcctgggttagagccatcctcttatctcagcctcccaagta
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54407918  26 +  91889043 ------------------------------------------------------------------------------------------ACAATTTTTAA---------------------------TTGTCATCTCAAGTA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              113269559   1 + 116334831 I
e proCoq1.NW_012142813v1        14577   1 +     80520 I
e mm10.chr7                  81349030 706 + 145441459 I
e calJac3.chr6               22237859   0 + 158406734 C
e dasNov3.JH570731            1798032   0 +   3943991 C
e cebCap1.NW_016107610v1       617261   0 -   2910086 C
e saiBol1.JH378108           50473621   0 +  54856640 C

a score=296170.000000
s hg38.chr15_KI270850v1_alt    335344 44 +    430880 gctgggattacaggcgcctgccacc---acgccaggctaattgttgt
s panTro5.chr15              63488762 44 +  83230942 gctgggattacaggcgcctgccacc---acgccaggctaattgttgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80446112 44 +  99763055 gctgggattacaggcgcctgccacc---acgccaggctaattgttgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        46026 44 -   1709092 gctgggattacaggcgcctgccacc---acgccaggctaattgttgt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198527 44 - 121039945 gctgggattacaggcgcatgctacc---acgccaggctaatttttgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886724 44 + 169600520 gctgggattacaggcacacaccacc---atgccaggctaatttttgt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413433 44 - 171882078 gctgggattacaggcacacaccacc---atgccaggctaatttttgt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        23877 44 -   2311642 gctgggattacaggcacacaccacc---atgccaggctaatttttgt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        22031 44 -   1987038 gctgggattacaggcacacaccacc---atgccaggctaatttttgt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102578 44 -  24206276 gctgggattacaggcacacaccaac---atgccaggataatttttgt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17755 44 -   1397330 gctgggattacaggcacacaccacc---atgccaggctaatttttgt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        41033 47 -   1784207 gctgggattacaggcacacaccaccggtatgccaggctaatttttgt
i colAng1.NW_012117110v1    C 0 C 0
s aotNan1.NW_018505940v1     40645228 41 +  42888418 gctgggattacaggc---cgccacc---atgcccagctaattttttt
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             631843 44 -  36342412 gctgggactacaggcgcctgctacc---acaccctgatagtttttct
i otoGar3.GL873530          C 0 C 0
e micMur3.chr9              113269559  1 + 116334831 I
e proCoq1.NW_012142813v1        14577  1 +     80520 I
e mm10.chr7                  81349030 706 + 145441459 I
e calJac3.chr6               22237859  0 + 158406734 C
e dasNov3.JH570731            1798032  0 +   3943991 C
e canFam3.chr3               54407944  0 +  91889043 C
e cebCap1.NW_016107610v1       617261  0 -   2910086 C
e saiBol1.JH378108           50473621  0 +  54856640 C

a score=397611.000000
s hg38.chr15_KI270850v1_alt    335388 60 +    430880 atttttaatagagacggggtttcaccatgttggccaggctggtc-----ctcct----------gatccgcccac
s panTro5.chr15              63488806 60 +  83230942 atttttaatagagacggggtttcaccatgttggccaggctggtc-----ctcct----------gatccgcccac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80446156 60 +  99763055 atttttaatagagacggggtctcaccatgttggccaggctggtc-----ctcct----------gatccgcccac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        46070 60 -   1709092 atttttaatagagacggggtttcaccatgttggccaggctggtc-----ctcct----------gatccgcccac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198571 60 - 121039945 atttttaggagagacggagtttcaccatgttggccaggctggtc-----ctcct----------gatcttcccgc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886768 73 + 169600520 atttttagtacagacggcgtttcaccatgttggccaggctggtctcaaactcctgacctcag--gatccgcccgc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413477 73 - 171882078 atttttagtacagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcag--gatccgcccgc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        23921 73 -   2311642 atttttagtacagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcag--gatccgcccgc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        22075 73 -   1987038 gtttttagtacagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcag--gatccgcccgc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102622 73 -  24206276 atttttagtacagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcag--gatccgcccgc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17799 73 -   1397330 atttttagtacagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcag--gatctgcccgc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        41080 73 -   1784207 atttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcag--gatccgcccgc
i colAng1.NW_012117110v1    C 0 C 0
s aotNan1.NW_018505940v1     40645269 72 +  42888418 g-tattagtagagacagggtttcaccatgttgaccaggatggtctcgatctcttgacctcgt--gatccacccgc
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             631887 73 -  36342412 atttttagtagagacagggtctcac--tcttgctcaggctggtctccaactcctgtactcaaacaatccacccac
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH570731            1798032 24 +   3943991 GTTTTTAATTAAGAGGAATTTACA---------------------------------------------------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113269559  1 + 116334831 I
e proCoq1.NW_012142813v1        14577  1 +     80520 I
e mm10.chr7                  81349030 706 + 145441459 I
e calJac3.chr6               22237859  0 + 158406734 C
e canFam3.chr3               54407944  0 +  91889043 C
e cebCap1.NW_016107610v1       617261  0 -   2910086 C
e saiBol1.JH378108           50473621  0 +  54856640 C

a score=342031.000000
s hg38.chr15_KI270850v1_alt    335448 51 +    430880 cttggcatcccaaagtgctgggattacaggtgtgaaccaccgcgcccagcc
s panTro5.chr15              63488866 51 +  83230942 cttggcatcccaaagtgctgggattacaggtgtgaaccaccgcgcccagcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80446216 51 +  99763055 cttggcatcccaaagtgctgggattacaggtgtgaaccaccgcgcccagcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        46130 51 -   1709092 cttggcatcccaaagtgctgggattacaggtgtgaaccaccgcgcccagcG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198631 51 - 121039945 cttggcattccaaagtgctgggattacaggtgtgaaccaccgtgcccagtc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886841 51 + 169600520 ctcagcctcccaaagtgctgggattacaggtgtgaaccaccacacccagcA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413550 51 - 171882078 ctcagcctcccaaagtgctgggattacaggtgtgaaccaccacacccagcA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        23994 51 -   2311642 ctcagcctcccaaagtgctgggattacaggtgtgaaccaccacacccagcA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        22148 51 -   1987038 ctcagcctcccaaagtgctgggattacaggtgtgaaccacgacacccagcA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102695 51 -  24206276 ctcagcctcccaaagtgctgggattacaggtgtgaaccaccacgcccagcA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17872 51 -   1397330 ctcagcctcccaaagtgctgggattacaggtgtgaaccaccacacccagcA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        41153 51 -   1784207 ctcagcctcccaaagtgctgggattacaggtgtgaaccaccacacccagcA
i colAng1.NW_012117110v1    C 0 C 0
s aotNan1.NW_018505940v1     40645341 51 +  42888418 ctcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggcc
i aotNan1.NW_018505940v1    C 0 I 6
s otoGar3.GL873530             631960 51 -  36342412 ctcagcctcctggagtactaggattacaggcacaagtcaccattcccagcc
i otoGar3.GL873530          C 0 I 100
s canFam3.chr3               54407944 21 +  91889043 CTAGACATATCAA----------------------------GTACCCAG--
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1798056 18 +   3943991 ---GATATCTCAA----------------------------GTGCCCAG--
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113269559  1 + 116334831 I
e proCoq1.NW_012142813v1        14577  1 +     80520 I
e mm10.chr7                  81349030 706 + 145441459 I
e calJac3.chr6               22237859  0 + 158406734 C
e cebCap1.NW_016107610v1       617261  0 -   2910086 C
e saiBol1.JH378108           50473621  0 +  54856640 C

a score=10920.000000
s hg38.chr15_KI270850v1_alt    335499 1 +    430880 A
s panTro5.chr15              63488917 1 +  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80446267 1 +  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        46181 1 -   1709092 A
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198682 1 - 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886892 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413601 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        24045 1 -   2311642 A
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        22199 1 -   1987038 A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102746 1 -  24206276 A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17923 1 -   1397330 A
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        41204 1 -   1784207 A
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237859 1 + 158406734 A
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50473621 1 +  54856640 A
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       617261 1 -   2910086 A
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40645398 1 +  42888418 A
i aotNan1.NW_018505940v1    I 6 C 0
e micMur3.chr9              113269559 1 + 116334831 I
e proCoq1.NW_012142813v1        14577 1 +     80520 I
e mm10.chr7                  81349030 706 + 145441459 I
e dasNov3.JH570731            1798074 0 +   3943991 C
e canFam3.chr3               54407965 0 +  91889043 C
e otoGar3.GL873530             632011 100 -  36342412 I

a score=42134.000000
s hg38.chr15_KI270850v1_alt    335500 3 +    430880 ACA
s panTro5.chr15              63488918 3 +  83230942 ACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80446268 3 +  99763055 ACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        46182 3 -   1709092 ACA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198683 3 - 121039945 ACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886893 3 + 169600520 ACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413602 3 - 171882078 ACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        24046 3 -   2311642 ACA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        22200 3 -   1987038 ACA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102747 3 -  24206276 ACA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17924 3 -   1397330 ACA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        41205 3 -   1784207 ACA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237860 3 + 158406734 ACA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50473622 3 +  54856640 ACA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       617262 3 -   2910086 ACA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40645399 3 +  42888418 AAA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113269560 3 + 116334831 ACA
i micMur3.chr9              I 1 C 0
s proCoq1.NW_012142813v1        14578 3 +     80520 ACA
i proCoq1.NW_012142813v1    I 1 C 0
s otoGar3.GL873530             632111 3 -  36342412 ATA
i otoGar3.GL873530          I 100 C 0
e mm10.chr7                  81349030 706 + 145441459 I
e dasNov3.JH570731            1798074 0 +   3943991 C
e canFam3.chr3               54407965 0 +  91889043 C

a score=368494.000000
s hg38.chr15_KI270850v1_alt    335503 26 +    430880 ATTTTTAATAGAGGGCAGGGACTTCA
s panTro5.chr15              63488921 26 +  83230942 ATTTTTAATAGAGGGCAGGGACTTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80446271 26 +  99763055 ATTTTTAATAGAGGGCAGGGACTTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        46185 26 -   1709092 ATTTCTAATAGAGGGCAGGGACTTCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198686 26 - 121039945 ATTTTTAATTGAGGGCAGGGACTTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886896 26 + 169600520 ATTTTTAATTGAGGGCAGGGACTTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413605 26 - 171882078 ATTTTTAATTGAGGGCAGGGACTTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        24049 26 -   2311642 ATTTTTAATTGAGGGCAGGGACTTCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        22203 26 -   1987038 ATTTTTAATTGAGGGCAGGGACTTCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102750 26 -  24206276 ATTTTTAATTGAGGGCAGGGACTTCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17927 26 -   1397330 ATTTTTAATTGAGGGCAGGGACTTCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        41208 26 -   1784207 ATTTTTAATTGAGGGCAGGGACTTCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237863 23 + 158406734 ATTTTTAATT---GGCAGGGACTTCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50473625 26 +  54856640 GTTTTTAATTGAGGGCAGGGACTTCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       617265 26 -   2910086 ATTTTTAATTGAGGGCAGGGACATCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40645402 25 +  42888418 TTTTTTAATTGAGGGCA-GGACTTCA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113269563 26 + 116334831 ATTTTTAATTGAGGGCAGGGACTTCA
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        14581 26 +     80520 ATTTTTAATTGAGGGCAGGGACTTCA
i proCoq1.NW_012142813v1    C 0 I 24
s otoGar3.GL873530             632114 26 -  36342412 ATTTTTAATTGAAGGCAGGGATTTCA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81349736 26 + 145441459 ATTTTTAAATTGTGGTATGGACTTCA
i mm10.chr7                 I 706 C 0
s canFam3.chr3               54407965  7 +  91889043 -----------------GGGACTT--
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1798074  4 +   3943991 -----------------GGGA-----
i dasNov3.JH570731          C 0 C 0

a score=65916.000000
s hg38.chr15_KI270850v1_alt    335529 5 +    430880 TAGAC
s panTro5.chr15              63488947 5 +  83230942 TAGAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80446297 5 +  99763055 TAGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        46211 5 -   1709092 TGGAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198712 5 - 121039945 TAGAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886922 5 + 169600520 CAGAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413631 5 - 171882078 CAGAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        24075 5 -   2311642 CAGAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        22229 5 -   1987038 CAGAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102776 5 -  24206276 CAGAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17953 5 -   1397330 CAGAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        41234 5 -   1784207 CAGAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237886 5 + 158406734 CAGAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50473651 5 +  54856640 TAGAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       617291 5 -   2910086 TAGAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40645427 5 +  42888418 TAGAC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113269589 5 + 116334831 CAGAC
i micMur3.chr9              C 0 I 15
s otoGar3.GL873530             632140 5 -  36342412 CAGAC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81349762 5 + 145441459 TAGGC
i mm10.chr7                 C 0 C 0
e proCoq1.NW_012142813v1        14607 24 +     80520 I
e dasNov3.JH570731            1798078 0 +   3943991 C
e canFam3.chr3               54407972 0 +  91889043 C

a score=38845.000000
s hg38.chr15_KI270850v1_alt    335534 3 +    430880 ATC
s panTro5.chr15              63488952 3 +  83230942 ATC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80446302 3 +  99763055 ATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        46216 3 -   1709092 ATC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198717 3 - 121039945 ATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886927 3 + 169600520 ATC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413636 3 - 171882078 ATC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        24080 3 -   2311642 ATC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        22234 3 -   1987038 ATC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102781 3 -  24206276 ATC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17958 3 -   1397330 ATC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        41239 3 -   1784207 ATC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237891 3 + 158406734 ATC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50473656 3 +  54856640 ATT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       617296 3 -   2910086 GTC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40645432 3 +  42888418 ATC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             632145 3 -  36342412 ATC
i otoGar3.GL873530          C 0 I 12
s mm10.chr7                  81349767 3 + 145441459 ATC
i mm10.chr7                 C 0 I 13
e micMur3.chr9              113269594 15 + 116334831 I
e proCoq1.NW_012142813v1        14607 24 +     80520 I
e dasNov3.JH570731            1798078 0 +   3943991 C
e canFam3.chr3               54407972 0 +  91889043 C

a score=82527.000000
s hg38.chr15_KI270850v1_alt    335537 6 +    430880 GGACCC
s panTro5.chr15              63488955 6 +  83230942 GGACCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80446305 6 +  99763055 GGACCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        46219 6 -   1709092 GGACCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198720 6 - 121039945 AGACCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886930 6 + 169600520 GGACCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413639 6 - 171882078 GGACCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        24083 6 -   2311642 GGACCC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        22237 6 -   1987038 GGACCC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102784 6 -  24206276 AGACCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17961 6 -   1397330 GGACCC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        41242 6 -   1784207 GGACCC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237894 6 + 158406734 GGACCC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50473659 6 +  54856640 GGACCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       617299 6 -   2910086 GGACCC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40645435 5 +  42888418 AGA-CC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113269609 6 + 116334831 GGACTC
i micMur3.chr9              I 15 C 0
s otoGar3.GL873530             632160 6 -  36342412 GGACTC
i otoGar3.GL873530          I 12 C 0
s mm10.chr7                  81349783 6 + 145441459 GGACTC
i mm10.chr7                 I 13 C 0
s dasNov3.JH570731            1798078 4 +   3943991 --ACTC
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        14607 24 +     80520 I
e canFam3.chr3               54407972 0 +  91889043 C

a score=2458038.000000
s hg38.chr15_KI270850v1_alt    335543 133 +    430880 ACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAAGGCAAAATAAGATGAT-GAAGTGGCTCTTCTTACCAGGAGGC
s panTro5.chr15              63488961 133 +  83230942 ACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAAGGCAAAATAAGAAGAT-GAAGTGGCTCTTCTTACCAGGAGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80446311 133 +  99763055 ACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAAGGCAAAATAAGAAGAT-GAAGTGGCTCTTCTTACCAGGAGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        46225 133 -   1709092 ACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAAGGCAAAATAAGAAGAT-GAAGTGGCTCTTCCTACCAGGAGGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198726 134 - 121039945 ACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAAGGCAAAATAAGAAGATGGAAGTGGCTCTTCTTACCAGGAGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60886936 133 + 169600520 ACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAAAGCAAAATAAGATGAC-GAAGTGGCTCTTCTTACCAGGAGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413645 133 - 171882078 ACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAAAGCAAAATAAGATGAC-GAAGTGGCTCTTCTTACCAGGAGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        24089 133 -   2311642 ACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAAAGCAAAATAAGATGAC-GAAGTGGCTCTTCTTACCAGGAGGC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        22243 133 -   1987038 ACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAAAGCAAAGTAAGATGAC-AAAGTGGCTCTTCTTACCAGGAGGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102790 133 -  24206276 ACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAAAGCAAAATAAGATGAC-GAAGTGGCTCTTCTTACCAGGAGGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        17967 133 -   1397330 ACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAAAGCAAAATAAGATGAC-GAAGTGGCTCTTCTTACCAGGAGGC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        41248 132 -   1784207 ACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCAC-AAAGCAAAATAAGATGAT-GAAGTGGCTCTTCTTACCAGGAGGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22237900 133 + 158406734 ACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCCAAGTAAGGGTCAATCTGAACCTGCACAAAAGCAAGAGATGATGAT-GAAGTGTCTCTTCTCAGCAGGAGGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50473665 133 +  54856640 ACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCCAAGTAAGGGTCAATCTGAACCTGCACAAAAGCAAAAGATGATGAT-GAAATGTGTCTTCTCACCAGGAGGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       617305 130 -   2910086 ACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCCAAGTAAGGGTCAATCTGAACCTGCACAAAAGCAAAAGAAGATGAT-GAAGTGTCTCTT---ACCAGGAGGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40645440 133 +  42888418 ACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCCAAGTAAGGGTCAATCTGAACCTGCACAAAAGCAAAAGATGATGAT-GAAGTGTCTCTTCTCACCAGGAGGA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113269615 133 + 116334831 ACCTGATCTCGGCAGAAGAAAGGACCGGGCTGAGAACTACAGATATGACACAGAGAATCTTCTAGGTAGGGATCAATCTGAACCTGCACAAAAGTAAAATAGGAGGAT-GAAGTAGATCCTCTCTCCAGGAGGC
i micMur3.chr9              C 0 I 86
s proCoq1.NW_012142813v1        14631 133 +     80520 ACCTGATCTCGGCAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCTTCTAGGTAGGGATCGATCTGAACCTGCACAAAAGCAAAATAGGAGGAT-GAAGTGGATCCTCACTCCAGGAGGC
i proCoq1.NW_012142813v1    I 24 C 0
s otoGar3.GL873530             632166 133 -  36342412 ACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTACAGATATGACACAAAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCACAAAAGTGAAATAGGAGGAT-GAAGTGGATCTTGCCCCCAGGAGGC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81349789 129 + 145441459 ACCTGATCTCGGCAGAAGAAAGGACCAGGTTGTGAGCTGCAGATAAGACACAGAGAATCTTCTAGATAGGGGTCAATCTGAACCTGAGGAACAGCAATA---GAAGAT-AAAATGGCTCCATGGGTCAGAGGA-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54407972 132 +  91889043 ACCTGATCTCGACAGAAGAAAGGACCAGGTTGGGAACTGCAGATGTGACACAGAGAATCTTCTAGGTAGGGGTCAATCTGAACCTGCAC-AAAGCAAAAACAGGTGAA-TGAGTGGCTCTTCTCTCCAGGAGGC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1798082 133 +   3943991 ACCTGATCTCGACAGAAGAAAGGACCAGGCTGAGAACTGCAGATATGACACAGAGAATCCTCTAGGTAGGGGTCAATCTGAACCTGAATAAACACAAAACAGAACAAG-AAAGTGGATCCTCTCACTAGGTGGC
i dasNov3.JH570731          C 0 C 0

a score=596856.000000
s hg38.chr15_KI270850v1_alt    335676 66 +    430880 TCGATAGGCGATAGAAGAAGGGCACATTATT-GGCCACACACAGGAATGCGGGATATTGGAATGCAG
s panTro5.chr15              63489094 66 +  83230942 TCGATAGGCTATAGAAGAAGGGCACATTATT-GGCCACACACAGGAATGCGGGATATTGGAATGCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80446444 66 +  99763055 TCGATAGGCTATAGAAGAAGGGCACATTATT-GGCCACACACAGGAATGCGGGATATTGGAATGCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        46358 66 -   1709092 TCGATAGGCTATAGAAGAAGGGCACATTATT-GGCCACACACAGGAATGCGGGATATTGGAATGCAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198860 65 - 121039945 TCGATAGGCTATA-AAGAAGGGCACATTATT-GGCCACACACAGGAATGCGGGATATCGGAATGCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60887069 66 + 169600520 TCAATAGGCTATAGAAGAAGTACATATTATT-GGCCACACACAGGAATGCAGGATATCGGAATGCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413778 66 - 171882078 TCAATAGGCTATAGAAGAAGTACATATTATT-GGCCACACACAGGAATGCAGGATATCGGAATGCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        24222 66 -   2311642 TCAATAGGCTATAGAAGAAGTACATATTATT-GGCCACACACAGGAATGCAGGATATCGGAATGCAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        22376 66 -   1987038 TCAATAGGCTATAGAAGAAGTACATATTATT-GGCCACGCACAGGAATGCAGGATATCGGAATGCAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102923 66 -  24206276 TCAACAGGCTATAGAAGAAGTGCATATTATT-GGCCACACACAGGAATGCAGGATATCGGAATGCAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        18100 66 -   1397330 TCAATGGGCTATAGAAGAAGTACATATTATT-GGCCACACACAGGAATGCAGGATATCGGAATGCAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        41380 66 -   1784207 TCAATAGGCTATAGAAGAAGTGCATATTATT-GGCCACACACAGGAATGCAGGATATCGGAATGCAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22238033 64 + 158406734 TTGATAGGTTACA---GAAGGGCACGTTACTGGGCTATACACAGGAATGTGGGATATCTAAATGCAG
i calJac3.chr6              C 0 I 312
s saiBol1.JH378108           50473798 64 +  54856640 CTGATCGGTTATA---GAAGGGCACATTACTGGGCTATACACAGGAATGTGGGATATCTGAATGCAG
i saiBol1.JH378108          C 0 I 317
s cebCap1.NW_016107610v1       617435 63 -   2910086 TTGATAGG-TATA---GAAGGGCACATTACTGGGCAATACACAGGAATGTGGGATATCTGAATACAG
i cebCap1.NW_016107610v1    C 0 I 309
s aotNan1.NW_018505940v1     40645573 64 +  42888418 TTGATAGGTTATA---GAAGGGCACATTACTGGGCTATACACAGGAATGTGGGATATCTGAATGCAG
i aotNan1.NW_018505940v1    C 0 I 307
s proCoq1.NW_012142813v1        14764 39 +     80520 CAGCTGGGCTAGAAGAGAA-------------GGGCACACGTAGAAGTGTAG---------------
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             632299 50 -  36342412 CAGTGGGGCTA-AAGAGAAGGGCTTATTATT-GGGCACACTCAAGAGTATAG---------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81349918 37 + 145441459 -------ACTGTA-----GTTACACATTATT-GA--GTATATAGGAATGTAG---------------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54408104 57 +  91889043 CAAATGGGCCAGACGAGAAACG-ACATTACTGGGATATACACAGGAATGCAGGAGGTT---------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1798215 52 +   3943991 CATATAGATTAGAAGGGAGGTGCCCATTATTGGGCCACACATAGGAATGCAG---------------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113269748 86 + 116334831 I

a score=770245.000000
s hg38.chr15_KI270850v1_alt    335742 67 +    430880 GATATTTGCCTGTTTTAAAGGAGGCTTGGAGAGAATTATGGGCCTGAAGTACAGAA-AGGAGTTCTAG
s panTro5.chr15              63489160 67 +  83230942 GATATTTGCCTGTTTTAAAGGAGGCTTGGAGAGAATTATGGGCCTGAAGTACAGAA-AGGAGTTCTAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80446510 67 +  99763055 GATATTTGCCTGTTTTAAAGGAGGCTTGGAGAGAATTATGGGCCTGAAGTACAGAA-AGGAGTTCTAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        46424 67 -   1709092 GATATTTGCCTGTTTTAAAGGAGGCTTGGAGAGAATTATGGGCCTGAAGTACAGAA-AGGAGTTCTAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198925 67 - 121039945 GATATTTGCCTGTTTTAAAGGAGGCTTGGAGAGAATTATGGGCCTGAAGTACAGAA-AGGGGTTCTAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60887135 67 + 169600520 GTTATTTGCCTGTTTTAAAGGAGGCTTGCAGAGAATTATGGGCCTGAAGCACAGAA-AGGGGTTCTAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413844 67 - 171882078 GTTATTTGCCTGTTTTAAAGGAGGCTTGCAGAGAATTATGGGCCTGAAGCACAGAA-AGGGGTTCTAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        24288 67 -   2311642 GTTATTTGCCTGTTTTAAAGGAGGCTTGCAGAGAATTATGGGCCTGAAGCACAGAA-AGGGGTTCTAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        22442 67 -   1987038 GTTATTTGCCTGTTTTAAAGGAGGCTTGCAGAGAATTATGGGCCTGAAGCACAGAA-AGGGGTTCTAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21102989 67 -  24206276 GTTATTTGCCTGTTTTAAAGGAGGCTTGCAGAGAATTATGGGCCTGAGGCACAGAA-CGGGGATCTAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        18166 67 -   1397330 GTTATTTGCCTGTTTTAAAGGAGGCTTGCAGAGAATTATGGGCCTGAAGCACAGAA-AGGGGTTCTAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        41446 63 -   1784207 GTTATTTGCCTGTTTTAAAGGAGGCTTGCAGAGAATTATGGGCCTGAAGCACAGAA-AGGGGTT----
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22238409 67 + 158406734 GATATCTGCCTGTTTTAAAGGAGGCTTGGAGAGAATTATGGGCCACAAGTGCAGAA-AGGGATTCTAG
i calJac3.chr6              I 312 C 0
s saiBol1.JH378108           50474179 67 +  54856640 GATATATGCCTGTTTTAAAGGAGGCTTGGAGAGAATTATGGGCCAGAAGTGCAGAA-AGGGATTCTAG
i saiBol1.JH378108          I 317 C 0
s cebCap1.NW_016107610v1       617807 67 -   2910086 GATATCTACCTGTTTTAAAGGAGGCTTGGAGAGAATTATGGGCCAGAAGTGCAGAA-AGGGATTCTAG
i cebCap1.NW_016107610v1    I 309 C 0
s aotNan1.NW_018505940v1     40645944 67 +  42888418 GATATCTGCCTGTTTTAAAGGAGGCTTGGAGAGAATTATGGGCCAGAAGTGCAGAA-AGGGATTCTAG
i aotNan1.NW_018505940v1    I 307 C 0
s proCoq1.NW_012142813v1        14803 47 +     80520 GATGTCTGCCTGTTTTAAAGGAGGTCTAGAGAGAAT-------------TACAGAC-AGAG-------
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             632349 47 -  36342412 GATGTTCATCTG--CAGATGCAGGCACAGAG------------------CACAGAA-AGGTGTTCTAG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81349955 55 + 145441459 GATGTT----TGTTCTTAAGGAGGC------AGAACTGTAGGC---AAGGGCTGAATATAGACCCTAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54408161 48 +  91889043 ---------TCCTTTTAAAGGAG--------AGAATTATGGGC--AGAGCACAAAC-ACAGCCCCTAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1798267 67 +   3943991 AACATTTGCCCCTTTTAAAGGGGGCCTAGAGAGAATTATGGAAAGAGGTTACAGAC-AGGGACCCTAC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113269748 86 + 116334831 I

a score=8528765.000000
s hg38.chr15_KI270850v1_alt    335809 577 +    430880 AGGACAGACTCATACACCATGCACAGTCAGGCTGGATGCCTCTGGGATTCAGGCAAC--CACACACCTTA--ATGCCTGGTCTTCTAGGC-AAACTGTA-CCTCAGCCCTCTATCAATTAGCAGTATAG--------GCAAGTGTTCGGAGGATTCCCA-----AAAGGTTGGAAAATAGGAAGTCAGGCTACTGAGCAATGCCAAAGA-AATACCA----CAGTGAGGGAAGGCACCCTACACACTGAAGAGGCTCA-------ACAGTCCCAGTTCC-CTTCCTCCTGGGCGTACAAAGACCAAGCCCACTCCCAAACCCTAACCTCAATGTTAATTCTCAGGAATTTGGCTCACTTCCCTAAA--CACACCCAGCACAA--ACAGCTTCAGGTCTCA-GGCCTGCCCTGGGTAGTAACT-GCCCAAACCCCTCT-CATATACC-CCAGAGTAAGGGCAT-AAACCAGCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGAACCTAGG-ACAACAGACACAAGCTT---CCCTTCTAACCAAATTCTCCCA
s panTro5.chr15              63489227 577 +  83230942 AGGACAGACTCATACACCATGCACAGTCAGGCTGGATGCCTCTGGGATTCAGGCAAC--CACACACCTTA--ATGCCTGGTCTTCTAGGC-AAACTGTA-CCTCAGTCCTCTATCAATTAGCAGTATAG--------GCAAGTGTTCGGAGGATTCCCA-----AAAGGTTGGAAAATAGGAAGTCAGGCTACTTAGCAATGCCAAAGA-AATACCA----CAGTGAGGGAAGGCACCCTACACACTGAAGAGGCTCA-------ACAGTCCCAGTTCC-CTTCCTCCTCGGCGTACAAAGACCAAGCCCACTCCCAAACCCTAACCTCAATGTTAATTCTCAGGAATTTGGCTCACTTCCCTAAA--CACACCCAGCACAA--ACAGCTTCAGGTCTCA-GGCCTGCCCTGGGTAGTAACT-GCCCAAACCCCTCT-CATATACC-CCAGAGTAAGGGCAT-AAACCAGCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGAACCTAGG-ACAACAGACACAAGCTT---CCCTTCTAACCAAATTCTCCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80446577 577 +  99763055 AGGACAGACTCATACACCATGCACAGTCAGGCTGGATGCCTCTGGGATTCAGGCAAC--CACACACCTTA--ATGCCTGGTCTTCTAGGC-AAACTGTA-CCTCAGCCCTCTATCAATTAGCAGTATAG--------GCAAGTGTTCGGAGGATTCCCA-----AAAGGTTGGAAAATAGGAAGTCAGGCTACTTAGCAATGCCAAAGA-AATACCA----CAGTGAGGGAAGGCACCCTACACACTGAAGAGGCTCA-------ACAGTCCCAGTTCC-CTTCCTCCTCGGCGTACAAAGACCAAGCCCACTCCCAAACCCTAACCTCAATGTTAATTCTCAGGAATTTGGCTCACTTCCCTAAA--CACACCCAGCACAA--ACAGCTTCAGGTCTCA-GGCCTGCCCTGGGTAGTAACT-GCCCAAACCCCTCT-CATATACC-CCAGAGTAAGGGCAT-AAACCAGCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGAACCTAGG-ACAACAGACACAAGCTT---CCCTTCTAACCAAATTCTCCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        46491 577 -   1709092 AGGACAGACTCATACACCATGCACAGTCAGGCTGGATGCCTCTGGGATTCAGGCAAC--CACACACCTTA--ATGCCTGGTCTTCTCGGC-AAACCGTA-CCTCAGCCCTCTATCAATTAGCAACATAG--------GCAAGTGTTCGGAGGATTCCCA-----AAAGGTTGGAAAATAGGAAGTCAGGCTACTTAGCAATGCCAAAGA-AATACCA----CAGTGAGGGAAGGCACCCTACACACTGAAGAGGCTCA-------ACAGTCCCAGTTCC-CTTCCTCCTGGGCGTACAAAGACCAAGCCCACTCCCAAACCCTAACCTCAATGTTAATTCTCAGGAATTTGGCTCACTTCCCTAAA--CACACCCAGCACAA--ACAGCTTCAGGTCTCA-GGCCTGCCCTGGGTAGTAACT-GCCCAAACCCCTCT-CATATACC-CCAGAGTAAGGGCAT-AAACCAGCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGAACCTAGG-ACAACAGACACAAGCTT---CCCTTCTAACCAAATTCTCCCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17198992 576 - 121039945 AGGACAGACTCATATACCATGCAGAGTCAGACTGGATGCCTCTGGGATTCAGGCAAC--CACACACCTTA--ATGCCTGGTCTTCTTGGC-AAACTGTA-CCTCAGCCCTCTATCAATTATCAATATAG--------GCAAGTGTTCAGAGGATTCCCG-----AAAGGTTGGAAAATAGCAAGTCAGGCTACTTAGCAATGCCAAAGA-AATACCA----CAGCGAGGGAAGGCACCCTACACACTGAAGAGGCTCA-------ACAGTCCCAGTTCC-CTT-CTCCTGGGCATACAAAGACCAAGCCCACTCCCAAACCCTAACTTCAATGTTAATTCTCAGGAGTTTGGCTCACTTCCCTAAA--CACACCCAGCACAA--ACAGCTTCAGGTCTCA-GGCCTGCCCTGGGTAGTAACT-GCCCAAACCCCTCT-CATACACC-CCAGAGTAAGGGCAT-AAACCAGCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGATCCTAGG-ACAACAGACACAAGCTT---CCCTTCTAACCAAATTCTCCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60887202 581 + 169600520 AGAGCAGACTCCTACACCAAGAAGAGTCAGGCTGGATGCCTCTGGAATTCAGGCAAC--CACACACCTTAATATGCCTGGTCCTCTCGGC-AAACTGTA-CCTCAGCCCTCTATCAATTAGCAATATGA--------GCAAGTGTTCAGAGGATTCCCG-----AAAGGTTGGAAAATGGGAAGTCAGGCTACTCAGCAATGCCAGAGA-AATACCA----CAGTGAGGGAAGGCACCCTACACACTAAAGAGGCTCA-------ACAGTCCCAGTTCC-CTTTCTCCTGGGTGTACAAAGACCAAGCCCACTCCCAAACCCTAACCTCAATGTTAATTCTCTGGAGTTTGGCTCACTTCCCTAAA--CACACCCAGCACAAACACAGCTTCAGGTCTCA-GGCCTGCCCTGGGTAGTAACT-GCCCAAATCCCTCT-CATATACT-CCAGAGTAAGGGCAT-AAACCAGCCAACTCACCTTCTTTGTGAATTTGGTGGTTTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGATCCTAGG-ACAACAGACACAAGCTT---CCCTTCTAACCAAATTCTCCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108413911 581 - 171882078 AGAGCAGACTCCTACACCAAGAAGAGTCAGGCTGGATGCCTCTGGAATTCAGGCAAC--CACACACCTTAATATGCCTGGTCCTCTCGGC-AAACTGTA-CCTCAGCCCTCTATCAATTAGCAATATGA--------GCAAGTGTTCAGAGGATTCCCG-----AAAGGTTGGAAAATGGGAAGTCAGGCTACTCAGCAATGCCAGAGA-AATACCA----CAGTGAGGGAAGGCACCCTACACACTAAAGAGGCTCA-------ACAGTCCCAGTTCC-CTTCCTCCTGGGTGTACAAAGACCAAGCCCACTCCCAAACCCTAACCTCAATGTTAATTCTCTGGAGTTTGGCTCACTTCCCTAAA--CACACCCAGCACAAACACAGCTTCAGGTCTCA-GGCCTGCCCTGGGTAGTAACT-GCCCAAATCCCTCT-CATATACT-CCAGAGTAAGGGCAT-AAACCAGCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGATCCTAGG-ACAACAGACACAAGCTT---CCCTTCTAACCAAATTCTCCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        24355 581 -   2311642 AGAGCAGACTCCTACACCAAGAAGAGTCAGGCTGGATGCCTCTGGAATTCAGGCAAC--CACACACCTTAATATGCCTGGTCCTCTCGGC-AAACTGTA-CCTCAGCCCTCTATCAATTAGCAATATGA--------GCAAGTGTTCAGAGGATTCCCG-----AAAGGTTGGAAAATGGGAAGTCAGGCTACTCAGCAATGCCAGAGA-AATACCA----CAGTGAGGGAAGGCACCCTACACACTAAAGAGGCTCA-------ACAGTCCCACTTCC-CTTCCTCCTGGGTGTACAAAGACCAAGCCCACTCCCAAACCCTAACCTCAATGTTAATTCTCTGGAGTTTGGCTCACTTCCCTAAA--CACACCCAGCACAAACACAGCTTCAGGTCTCA-GGCCTGCCCTGGGTAGTAACT-GCCCAAATCCCTCT-CATATACT-CCAGAGTAAGGGCAT-AAACCAGCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGATCCTAGG-ACAACAGACACAAGCTT---CCCTTCTAACCAAATTCTCCCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        22509 583 -   1987038 AGAGCAGACTCCTACACCAAGAAGAGTCAGGCTGGATGCCTCTGGAATTCAGGCAACCACACACACCTTAATATGCCTGGTCCTCTCGGC-AAACTGTA-CCTCAGCCCTCTATCAATTAGCAATATGA--------GCAAGTGTTCAGAGGATTCTCG-----AAAGGTTGGAAAATGGGAAGTCAGGCTACTTAGCAATGCCAGAGA-AATACCA----CAGTGAGGGAAGGCACCCTACACACTAAAGAGGCTCA-------ACAGTCCCAGTTCC-CTTCCTCCTGGGTGTACAAAGACCAAGCCCACTCCCAAACCCTAACCTCAATGTTAATTCTCTGGAGTTTGGCTCACTTCCCTAAA--CACACCCAGCACAAACACAGCTTCAGGTCTCA-GGCCTGCCCCAGGTAGTAACT-GCCCAAACCCCTCT-CATATACT-CCAGAGTAAGGGCAT-AAACCAGCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGATCCTAGG-ACAACAGACACAAGCTT---CCCTTCTAACCAAATTCTCCCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21103056 582 -  24206276 AGAGCAGACTCCTACACCAAGAAGAGTCAGGCTGGATGCCTCTGGAATTCAGGCAAC--CACACACCTTAATATGCCTGGTCCTCTCGGC-AAACTGTACCCTCAGCCCTCTATCAATTAGCAATATGA--------GCAAGTGTTCAGAGGATTCCCG-----AAAGGTTGGAAAATGGGAAGTCAGGCTACTTAGCAATGCCAGAGA-AATACCA----CAGTGAGGGAAGGCACCCTACACACTAAAGAGGCTCA-------ACAGTCCCAGTTCC-CTTCCTCCTGGGTGTACAAAGACCAAGCCCACTCCCAAACCCTAACCTCAATGTTAATTCTCTGGAGTTTGGCTCACTTCCCTAAA--CACACCCAGCACAAACACAGCTTCAGGTCTCA-GGCCTGCCCTGGGTAGTAACT-GCTCAAACCCCTCT-CATACACT-CCAGAGTAAGGGCAT-AAACCAGCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGATCCTAGG-ACAACAGACACAAGCTT---CCCTTCTAACCAAATTCTCCCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        18233 581 -   1397330 AGAGCAGACTCCTACACCAAGAAGAGTCAGGCTGGATGCCTCTGGAATTCAGGCGAC--CACACACCTTAATATGCCTGGTCCTCTCGGC-AAACTGTA-CCTCAGCCCTCTATCAATTAGCAATATGA--------GCAAGTGTTCAGAGGATTCTCG-----AAAGGTTGGAAAATGGGAAGTCAGGCTACTTAGCAATGCCAGAGA-AATACCA----CAGTGAGGGAAGGCACCCTACACACTAAAGAGGCTCA-------ACAGTCCCAGTTCC-CTTCCTCCTGGGTGTACAAAGACCAAGCCCACTCCCAAACCCTAACCTCAATGTTAATTCTCTGGAGTTTGGCTCACTTCCCTAAA--CACACCCAGCACAAACACAGCTTCAGGTCTCA-GGCCTGCCCCGGGTAGTAACT-GCCTAAACCCCTCT-CATATACT-CCAGAGTAAGGGCAT-AAACCAGCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGATCCTAGG-ACAAGAGACACAAGCTT---CCCTTCTAACCAAATTCTCCCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        41509 575 -   1784207 ------GACTCCTACACCATGCAGAGTCAGGCTGGATGCCTCTGGGATTCAGGCAAC--CACACACCTTAATATGCCTGGTCCTCTTGGC-AAACTGTA-CCTCAGCCCTCTATCAATTAGCAATATGG--------GCAAGTGTTCAGAGGATTCCCA-----AAAGGTTGGAAAATGGGAAGTCAGGCTACTTAGCAATGCCAGAGA-AATACCA----CAGTGAGGGAAGGCACCCTACACACTAAAGAGGCTCA-------ACAGTCCCAGTTCC-CTTCCTCCTGGGCGTACAAAGACCAAGCCCACTCCCAAACCCTAACCTCAATGTTAATTCTCAGGAGTTTGGCTCACTTCCCTAAA--CACACCCAGCACAAACACAGCTTCAGGTCTCA-GGCCTGCCCTGGGTAGTAACT-GCCCAAACCCCTCT-CATATACC-TCAGAGCAAGGGCAT-AAACCAGCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGATCCTAGG-ACAAAAGACACAAGCTT---CCCTTCTAACCAAATTCTCCCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22238476 565 + 158406734 -----------ATACACCATGCAGAGCCAGGCTGGATGCCTCCAGGATTTGGGCAAC--CACACATTTTA--ATGCCTTGTCTTCTCAGC-AAACTGTA-CCTCAGCCCTCTATCAATTAGCAATATAG--------GCAAGTGTTGAGAGGATTCCTG-----AAAGGTTGGATAATGGAAAGTCAGGCTACTTAGCAATGTCAGAGA-AACACCA----CAGTGAGGG-AGGCACCCTACACACTGAAGAGGCTTA-------ACAGTTCCAGTT-C-CTTCCTCCTGAGCCTACAAAGACCAAGCCCACTCCCAAACCCTAATCTCAGTGTTAATTCTCAGGAGTTTGGCTCAATTCCCTGAA--CACACCCAGCATAAACAGAGCTTCAGGTATCAGGGCCTGCCCTAGGCAGTAATT-GCCCAAACCCCTCT-CATATATC-CCAGAGTAAGAGCAT-AAACCATCCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCAACAAAAGCAGCACTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGATCCTAGG-ACA--AGACACAAGCTT---CCCTTCTAACCCAATTCTGCCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50474246 579 +  54856640 AGGACAGACTCATACACCATGCAGAGCCAGGCTGGATGCCTCCAGGATTTGAGCAAC--CATACATCTTA--ATGCCTGGTCTTCTCAGC-AAACTGTA-CCTCAGCCCTCTATCAATTAGCAATATAG--------GCAAGTGTTGAGAGGATTCCTG-----AAAGGTTGGATAATGGGAAGTCAGGCTACTTAGCAATGTCAGAGA-AACACCA----CAGTGAGGG-AGGCACCCTACACACTGAAGAGGCTCA-------ACAGTCGCAGTTCC-CTTCCTCCTGAGCCTACAAAGACCAAGTCCACTCCCAAACCCTAACCTCAGTGTTAATTCTCAGGAGTTTGGCTCACTTCCCTCAA--CACACCCAGCATAAACACAGCTTCAGGTCTCAGGGCCTGCCCTGGGTAGTAATC-GCCCAAACCCCTCT-TATATATC-CCAGAGTAAGAGCAT-AAACCAGCCAACTGACCTTCTTTGTGAACTTGGTGGTTTTGATCTCGACAAAAGCAGCACTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGATCCTAGG-ACAAGAGACACAAACTT---CCCTTCTAACCAAATTCTGCCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       617874 579 -   2910086 AGGACAGACTCATACACCACGCAGAGCCAGGCTGGATGCCTCCAGGATTCAGGCAAT--CACACATCTTA--ATGCCTGGTCTTCTCAGC-AAACTGTA-CCTTAGCCCTCTATCAATTAGCAATATAG--------GCAAGTGTTGAGAGGATTCCCG-----AAAGGTTGGATAATGGGAAGTCAGGCTACTTGGCAATGTCAGAGA-AACACCA----CAGTGAGGG-AGGCACCCTACACACTGAAGCAGCTCA-------ACAGTCCCAGTTCC-CTTCCTCCTGAGCCTACAAAGACCAAGCCCACTCCCAAACCCTAACCTCAGTGTTAATTCTCAGGAGTTTGGCTCACTTCCCTGAA--CACACCCAGCATAAACACAGCTTCAGGTCTCAGGGCCTGCCCTGGGTGGTAATC-GCCCAAACCCCTCT-TATATATC-CCAGAGTAAGAGCAT-AAACCAGCCAACTGACCTTCTTTGTGAACTTGGTGGTTTTGATCTCAACAAAAGCAGCACTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGATCCTAGG-ACAAGAGACACAAGCTT---CCCTTCTAACCAAATTCTGCCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40646011 573 +  42888418 AGGACAGACTCATACACCATGCAGAGCCAGGCTGGATGCCTCCAAGATTCGGGCAAC--CACAC--------ATGCCTGGTTTTCTCAGC-AAACTGTA-CCTCAGCCCTCTATCAATTAGCAATATAG--------GCAGGTGTTGAGAGGATTCCTG-----AAAGGTTGGATAATGGGAAGTCAGGCTACTTAGCAATGTCAGAGA-AACACCA----CAATGAGGG-AGGCACCCTACACACTGAAGAGGCTTA-------ACAGTCCCAGTTGC-CTTCCTCCTGAGCCTACAAAGACCAAGCCCACTCCCAAACCCTAACCTCCATGTTAATTCTCAGGAGTTTGGCTCACTTCCCTGAA--CACACACAGCATAAACACAGCTTCAGGTCTCAGGGCCTGCCCTGGGTAGTAATT-GCCCAAACCCCTCT-CATATATC-CCAGAGTAAGAGCAT-AAACCAGTCAACTCACCTTCTTTGTGAACTTGGTGGTTTTGATCTCAACAAAAGCAGCACTGACTGCTTTCAGGTAACTCCGTTGGTTATTGAAAGTCACACGACCAGATCCTAGG-ACAACAGACATAAGCTT---CCCTTCTAACCAAATTCTGCCA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113269834 568 + 116334831 AGGACAGACTCACACACTATGCAGAGCCAGGCTGGCTGCCCCCAAGATTCAAGCAGC--CACAC---CTA--ATGCCTGGCCTTCTCAGC-AAACTATA-TGCCAGCCCTTTACCATCTGGCAATA--G--------CCAAGTATGCAGAGGATTCAGG-----AAAGGCTGGATAACGGGAAGTCAGGCTACTCAGCAGTGCCAGACA-AGTAACA----CAGTGAGGGCGGG-------CACGCTGAGGAGGTTCA-------ACAGTCGCACATTC-CTCCCTCCTGAGCTGAC-AAGACCAGTCCCACTCCTGAACCCTAACCTCA-TGTTAATTCTCAGCACTTTGGCTCACTTCTCTGAGTATACACCCAGCACAGATACAGCTTTA-ATTTCA-GGCTTCTCCTGGGTAGTAACTGGCACAAGCCCCTCT-CAGATATC-CCAGAATAAGGGCAT-AAACCAGCGAACTCACCTTCTTCGTGAACTTCGTGGTTTTAATTTCCACAAAAGCAGCACTGACTGCTTTCAGGTAACTACGTTGGTTATTGAAAGTCACACGACCAGATCCTAGGAACAAGAGATACAAGCTT---ACCTTCTAACCAAATTCTCCCA
i micMur3.chr9              I 86 C 0
s proCoq1.NW_012142813v1        14850 572 +     80520 AGGACAGACTCACACACTATGCAGAGCCAGGCTGGCTGCCTCCAAGATTCAGGCAAC--CACACGCATTA--CTGCCTGGCCTTCTCAGC-AAACTATA-TGCCAGCCCTTTACCATTTGGCAATA--G--------CCAAGTGTGCAGAAGATTCAGG-----AAAGGTTGGATAATGGGAAGTCAGGCTACTTAGCACTGCCAGACA-AGTAACA----CAGTGAGGGAAGG-------CACGCTGAGGAGATTCA-------ACAGTCCCACTTTC-CTCCCTCCTGCGTTGAC-AAGACCAGGCCCACTCTCAAACCCTAACCTCA-TGCTAATTCTCAGCACTTTGGCTCACTTCTCTAAGCATACACCCAGCACAGATACAGCTTCA-ATCTCA-GGCTTGTCCTGGGTAGTAACTGGCACAAGCCCCTCT-CAGATATC-CCAGAATAAGGGCATAAAACCAGCCAACTCACCTTCTTGGTGAACTTCGTGGTTTTGATTTCCACAAAAGCAGCACTGACTGCTTTCAGGTAACTACGTTGGTTATTGAAAGTCACGCGACCAGATCCTAGGAACAACAGATACAAACTT---ACCTTCTAACCAAATTCTCCCA
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             632396 511 -  36342412 ----AGGACTCACACACTATGCACAGCCAGGCCAACTGCCT-CAAGGTTCAAGCAAC--CACACATCTTA--CTGCCAGGCCTTCTCAGC-AAACTATA-TGCCAGCCCTTTAACATTTAGCAATA--GGTAAGTGTTCAAGTGTTCAGAACATTCAGG-----CGAGGTTGAATAATGGGAAGCCAGGATATTCGGTAATGCCAGACAGACTAGCA----CAGGTAGGGCAGG-------CACGCTGAGAGG--TCA-------GCAGTCCCG-TTCC-CTACCTGCAGAGCCTGC-AAGATCAGGCCCAC-----ACCCCTAACT-----------------------------------------CACACCCAATGC--ACACAGCCTCA-ATCTCA-CACCTGCCCAGGGCAATGACCCACACAAGCCCTTCTCCAGATATC--------------------CCAACCAACTCACCTTCTTGGTGAACTTCGTGGTTTTGATTTCCACAAAAGCAGCACTGACTGCTTTCAGGTAACTACGTTGGTTATTGAAAGTCACACGACCAGATCCTAGGGACAAGAGGTACAAGCTTATCACCTTCTAGCCAGATTCTCCCA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81350010 475 + 145441459 ATGATAGACTCATACC-------------------ATACTTTTAGCATTTGGACAAC--CACACACCTTA--CTGGCTGTTCTTTCAGGC-AAAATGAA-CCCTAGTCTGGTATCAATTAGCAGCA--G--------TTAAGTGTTCAGAGGATTT----------AGGTAAGAGAGTTCATAAAATTGCTACTTAACAATTTCAGACA-AATATCA----AAATGAGG------ACCCTTCTCCCTAACCACACTCATATGCACACAGCCCC----------------GAGTCTAGAGAGG---------------AACGC--------AGGTTAACTCT--GCTGCTGGGCTCACTTCTCCAAT------------------------------CTTG-GAGCTACACTGTTTTATAACT-GATCCAAG---TCT-----------CAAAATAAGCACAC-TAACC-GCACACTCACCTTCTTGGTAAACTTGGTGGTTTTGATCTCCACAAAAGCAGCGGTGACTGCTTTCAGATAACTACGTTGGTTATTGAAAGTCACACGACCAGACCCTAGG-AAAATGGGCACAAGCTTAT-ACCTTCTGCTCAAATTCTTTTA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54408209 508 +  91889043 AGGTCAGATGCACACACCACACAAAGCCAGGCTGGCAGGCTCCACAATATGGGCAAC--AACGTACATTA--CTGCATGGATTTCTTGGTGAAATCATA-CACCAGCATTTGATTACCCAGCAAAC--G--------GTAAGTGTTGAGGAGACGCAGG-----TCAGGTTGGAGAATGGGAAGCCAGGCTGCCTAGTGACGAC-GTCA-AATACC-----CAGTGAGCAGAGACACCTCGCATGTTGATGAGGCTCC-------AGGGTCCCAGCTCTACTCCCTCCTGAGCCTGCCACGGCCGGGCAC------------------------------------------------TCCCTGCG--CACCCCCAGCATATGAACAGCTCCA-GTTCCA-GGCCTGCCTTGGGTGGTAAAG-ACCCA----------C------------AGTAATGATAG-AGACCAGCGCACTCACCTTCTTGCTGAACTTGGTGGTCTTGATCTCCACAAAAGCAGCGCTGACTGCTTTCAGGTAACTATGTTGGTTATTGAAAGTCACGCGACCAGACCCTAGA-AACAAGGGAACAAACTG---ACCTTCTAGCCAAATTCTCTCA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1798334 551 +   3943991 AGGACAAACACACATGCTATGCAGAGCCAAGCTGGCCCCTT------------------CA-----------CTGCCTGGTGCTCTCAGC-AATTTGTA-TCCCAGGTCTCTCTCAGTTAGCTAT---G--------GTGAGTCCTTACAGAACATATAGGGGTAAGGGTTACAGAATGGGATGTGAGGCTACCTAGCACTAACAGAAA-AATACCATGTGCAATAAGGGAAGGCACCCCATAGAGCGAGGAGGCTCA-------ACAGCACCAGTTCC-CTTCTTCCTGAGCAGACCAGGCCCAAGTCCACTCCTACACCCTGACATCA-TGAAAATTCCCAGAAGTTCAGCTCACACTCCTGAG--CACACCCAGCACAAGCACAGCTTTG-GTCTCA-GGC----------TAGTAACTGGTCTGAGCCCCTTT-CAAATGCTTCCAGAACAAGAAGAC-AGTCCAGCCCACTCACCTTCTTGGTGAACTTGGTGGTTTTGATCTCCACAAAAGCCGCACTGACTGCTTTCAGGTAACTACGTTGGTTATTGAAAGTCACACGGCCAGACCCTAGAAGTGACAGACACATACTT---ATCTTCTAGCCAAATTCTCCCA
i dasNov3.JH570731          C 0 C 0

a score=1841.000000
s hg38.chr15_KI270850v1_alt    336386 1 +    430880 -A
s panTro5.chr15              63489804 1 +  83230942 -A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80447154 1 +  99763055 -A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        47068 1 -   1709092 -A
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17199568 1 - 121039945 -A
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22239041 1 + 158406734 -A
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50474825 1 +  54856640 -A
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       618453 1 -   2910086 -A
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40646584 1 +  42888418 -A
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113270402 1 + 116334831 -A
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        15422 1 +     80520 -A
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             632907 1 -  36342412 -A
i otoGar3.GL873530          C 0 I 112
s mm10.chr7                  81350485 1 + 145441459 -A
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54408717 1 +  91889043 -A
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1798885 1 +   3943991 T-
i dasNov3.JH570731          C 0 C 0
e colAng1.NW_012117110v1        42084 0 -   1784207 C
e manLeu1.NW_012106908v1        18814 0 -   1397330 C
e chlSab2.chr29              21103638 0 -  24206276 C
e cerAty1.NW_012002657v1        23092 0 -   1987038 C
e macNem1.NW_012011945v1        24936 0 -   2311642 C
e macFas5.chr7              108414492 0 - 171882078 C
e rheMac8.chr7               60887783 0 + 169600520 C

a score=20098.000000
s hg38.chr15_KI270850v1_alt    336387 3 +    430880 ATG
s panTro5.chr15              63489805 3 +  83230942 ATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80447155 3 +  99763055 ATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        47069 3 -   1709092 ATG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17199569 3 - 121039945 ATG
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22239042 3 + 158406734 ATG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50474826 3 +  54856640 ATG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       618454 3 -   2910086 ATG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40646585 3 +  42888418 ATG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113270403 3 + 116334831 ATG
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        15423 3 +     80520 ATG
i proCoq1.NW_012142813v1    C 0 C 0
s mm10.chr7                  81350486 3 + 145441459 ATT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54408718 3 +  91889043 ATG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1798886 3 +   3943991 AAG
i dasNov3.JH570731          C 0 C 0
e otoGar3.GL873530             632908 112 -  36342412 I
e colAng1.NW_012117110v1        42084 0 -   1784207 C
e manLeu1.NW_012106908v1        18814 0 -   1397330 C
e chlSab2.chr29              21103638 0 -  24206276 C
e cerAty1.NW_012002657v1        23092 0 -   1987038 C
e macNem1.NW_012011945v1        24936 0 -   2311642 C
e macFas5.chr7              108414492 0 - 171882078 C
e rheMac8.chr7               60887783 0 + 169600520 C

a score=7800.000000
s hg38.chr15_KI270850v1_alt    336390 1 +    430880 C
s panTro5.chr15              63489808 1 +  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80447158 1 +  99763055 C
i panPan2.chr15             C 0 I 1
s gorGor5.CYUI01015556v1        47072 1 -   1709092 C
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17199572 1 - 121039945 C
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22239045 1 + 158406734 C
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50474829 1 +  54856640 C
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40646588 1 +  42888418 C
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113270406 1 + 116334831 C
i micMur3.chr9              C 0 I 252
s proCoq1.NW_012142813v1        15426 1 +     80520 C
i proCoq1.NW_012142813v1    C 0 I 336
s mm10.chr7                  81350489 1 + 145441459 C
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54408721 1 +  91889043 C
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1798889 1 +   3943991 C
i dasNov3.JH570731          C 0 C 0
e cebCap1.NW_016107610v1       618457 0 -   2910086 C
e otoGar3.GL873530             632908 112 -  36342412 I
e colAng1.NW_012117110v1        42084 0 -   1784207 C
e manLeu1.NW_012106908v1        18814 0 -   1397330 C
e chlSab2.chr29              21103638 0 -  24206276 C
e cerAty1.NW_012002657v1        23092 0 -   1987038 C
e macNem1.NW_012011945v1        24936 0 -   2311642 C
e macFas5.chr7              108414492 0 - 171882078 C
e rheMac8.chr7               60887783 0 + 169600520 C

a score=3785.000000
s hg38.chr15_KI270850v1_alt    336391 1 +    430880 T
s panTro5.chr15              63489809 1 +  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80447160 1 +  99763055 T
i panPan2.chr15             I 1 C 0
s gorGor5.CYUI01015556v1        47073 1 -   1709092 T
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17199573 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22239046 1 + 158406734 T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50474830 1 +  54856640 T
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40646589 1 +  42888418 T
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81350490 1 + 145441459 T
i mm10.chr7                 C 0 I 210
s canFam3.chr3               54408722 1 +  91889043 T
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1798890 1 +   3943991 C
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113270407 252 + 116334831 I
e proCoq1.NW_012142813v1        15427 336 +     80520 I
e cebCap1.NW_016107610v1       618457 0 -   2910086 C
e otoGar3.GL873530             632908 112 -  36342412 I
e colAng1.NW_012117110v1        42084 0 -   1784207 C
e manLeu1.NW_012106908v1        18814 0 -   1397330 C
e chlSab2.chr29              21103638 0 -  24206276 C
e cerAty1.NW_012002657v1        23092 0 -   1987038 C
e macNem1.NW_012011945v1        24936 0 -   2311642 C
e macFas5.chr7              108414492 0 - 171882078 C
e rheMac8.chr7               60887783 0 + 169600520 C

a score=13152.000000
s hg38.chr15_KI270850v1_alt    336392 4 +    430880 ACtt
s panTro5.chr15              63489810 4 +  83230942 ACtt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80447161 4 +  99763055 ACtt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        47074 4 -   1709092 ACCt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17199574 4 - 121039945 ACtt
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22239047 4 + 158406734 ACTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50474831 4 +  54856640 ACTC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40646590 4 +  42888418 ACTC
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54408723 4 +  91889043 ACTT
i canFam3.chr3              C 0 I 116
s dasNov3.JH570731            1798891 4 +   3943991 ACTT
i dasNov3.JH570731          C 0 I 125
e micMur3.chr9              113270407 252 + 116334831 I
e proCoq1.NW_012142813v1        15427 336 +     80520 I
e mm10.chr7                  81350491 210 + 145441459 I
e cebCap1.NW_016107610v1       618457 0 -   2910086 C
e otoGar3.GL873530             632908 112 -  36342412 I
e colAng1.NW_012117110v1        42084 0 -   1784207 C
e manLeu1.NW_012106908v1        18814 0 -   1397330 C
e chlSab2.chr29              21103638 0 -  24206276 C
e cerAty1.NW_012002657v1        23092 0 -   1987038 C
e macNem1.NW_012011945v1        24936 0 -   2311642 C
e macFas5.chr7              108414492 0 - 171882078 C
e rheMac8.chr7               60887783 0 + 169600520 C

a score=9338.000000
s hg38.chr15_KI270850v1_alt    336396 4 +    430880 tttt
s panTro5.chr15              63489814 4 +  83230942 tttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80447165 4 +  99763055 tttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        47078 4 -   1709092 tttt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17199578 4 - 121039945 tttt
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22239051 4 + 158406734 TTTT
i calJac3.chr6              C 0 I 13
s saiBol1.JH378108           50474835 4 +  54856640 TCTT
i saiBol1.JH378108          C 0 I 13
s aotNan1.NW_018505940v1     40646594 4 +  42888418 TTTT
i aotNan1.NW_018505940v1    C 0 I 420
e micMur3.chr9              113270407 252 + 116334831 I
e proCoq1.NW_012142813v1        15427 336 +     80520 I
e mm10.chr7                  81350491 210 + 145441459 I
e dasNov3.JH570731            1798895 125 +   3943991 I
e canFam3.chr3               54408727 116 +  91889043 I
e cebCap1.NW_016107610v1       618457 0 -   2910086 C
e otoGar3.GL873530             632908 112 -  36342412 I
e colAng1.NW_012117110v1        42084 0 -   1784207 C
e manLeu1.NW_012106908v1        18814 0 -   1397330 C
e chlSab2.chr29              21103638 0 -  24206276 C
e cerAty1.NW_012002657v1        23092 0 -   1987038 C
e macNem1.NW_012011945v1        24936 0 -   2311642 C
e macFas5.chr7              108414492 0 - 171882078 C
e rheMac8.chr7               60887783 0 + 169600520 C

a score=273.000000
s hg38.chr15_KI270850v1_alt    336400 16 +    430880 tttttt----------------------------------------------------tttttttttt
s panTro5.chr15              63489818 14 +  83230942 tttttt----------------------------------------------------tttttttt--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80447169 16 +  99763055 tttttt----------------------------------------------------tttttttttt
i panPan2.chr15             C 0 I 31
s gorGor5.CYUI01015556v1        47082 16 -   1709092 tttttt----------------------------------------------------tttttttttt
i gorGor5.CYUI01015556v1    C 0 I 4
s nomLeu3.chr6               17199582 16 - 121039945 tttttt----------------------------------------------------tttttttttt
i nomLeu3.chr6              C 0 I 8
s calJac3.chr6               22239068 66 + 158406734 TCCTTTACTATACATACcagtactgtccaacagaaatataatgtgagctactatgtaactttattt--
i calJac3.chr6              I 13 C 0
s saiBol1.JH378108           50474852 66 +  54856640 CCCTTTACTATGCATGTAagtgctgtccaacagaaacataatgtgagctactatgtaactttattt--
i saiBol1.JH378108          I 13 C 0
e micMur3.chr9              113270407 252 + 116334831 I
e proCoq1.NW_012142813v1        15427 336 +     80520 I
e aotNan1.NW_018505940v1     40646598 420 +  42888418 I
e mm10.chr7                  81350491 210 + 145441459 I
e dasNov3.JH570731            1798895 125 +   3943991 I
e canFam3.chr3               54408727 116 +  91889043 I
e cebCap1.NW_016107610v1       618457  0 -   2910086 C
e otoGar3.GL873530             632908 112 -  36342412 I
e colAng1.NW_012117110v1        42084  0 -   1784207 C
e manLeu1.NW_012106908v1        18814  0 -   1397330 C
e chlSab2.chr29              21103638  0 -  24206276 C
e cerAty1.NW_012002657v1        23092  0 -   1987038 C
e macNem1.NW_012011945v1        24936  0 -   2311642 C
e macFas5.chr7              108414492  0 - 171882078 C
e rheMac8.chr7               60887783  0 + 169600520 C

a score=79070.000000
s hg38.chr15_KI270850v1_alt    336416 83 +    430880 tttgagatggagtctcgctctttcgcccaggctggtgtgcagtggcgcaatctctgctcactgcaagctctgcctcccggttt
s panTro5.chr15              63489832 80 +  83230942 ---gagacggagtctcgctcttttgcccaggctggtgtgcagtggcgcaatctctgctcactgcaagctctgcctcccggttt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        47102 83 -   1709092 tgtgagacggagtctcgctctttcgcccaggctggtgtgcagtggtgcaatctctgctcactgcaagctctgcctcccggttt
i gorGor5.CYUI01015556v1    I 4 C 0
s nomLeu3.chr6               17199606 83 - 121039945 tttgagatggagtcttgctctttcgcccaggctggtgtgcagtggcacaatctctgctcactgcaagctctgcctcccggttt
i nomLeu3.chr6              I 8 M 480
s calJac3.chr6               22239134 78 + 158406734 cttgagacagagtctccctctgtcagccaggctggagtataatggcatga-----gctcactgcaacgtctgcatcccaggct
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50474918 76 +  54856640 cttgagac--agtctccctctctcacccaggctggagtataatggcgtga-----gcccactgcaacctctgcatcccgggct
i saiBol1.JH378108          C 0 C 0
e micMur3.chr9              113270407 252 + 116334831 I
e proCoq1.NW_012142813v1        15427 336 +     80520 I
e aotNan1.NW_018505940v1     40646598 420 +  42888418 I
e mm10.chr7                  81350491 210 + 145441459 I
e dasNov3.JH570731            1798895 125 +   3943991 I
e canFam3.chr3               54408727 116 +  91889043 I
e cebCap1.NW_016107610v1       618457  0 -   2910086 C
e otoGar3.GL873530             632908 112 -  36342412 I
e panPan2.chr15              80447185 31 +  99763055 I
e colAng1.NW_012117110v1        42084  0 -   1784207 C
e manLeu1.NW_012106908v1        18814  0 -   1397330 C
e chlSab2.chr29              21103638  0 -  24206276 C
e cerAty1.NW_012002657v1        23092  0 -   1987038 C
e macNem1.NW_012011945v1        24936  0 -   2311642 C
e macFas5.chr7              108414492  0 - 171882078 C
e rheMac8.chr7               60887783  0 + 169600520 C

a score=119196.000000
s hg38.chr15_KI270850v1_alt    336499 170 +    430880 cacgccattctcctgcctcagcctcccgagtagctgggactacaggcatctgccaccacacccagctaattttttgtatttttagtagagatcgggtttcacc--attagccagcatggtcttgatctcctgacctt--gtgacccgcccgcctcagcctcccaaagtgctggg
s panTro5.chr15              63489912 170 +  83230942 cacaccattctcctgcctcagcctcccgagtagctgggactacaggcatctgccaccacacccagctaattttttgtatttttagtagagatcgggtttcacc--attagccagcatggtcttgatctcctgacctc--gtgacccgcccgcctcagcctcccaaagtgctggg
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        47185 169 -   1709092 cacgccattctcctgcctcagcct-ccgagtagctgggactacaggcatctgccaccacactcagctaactttttgtatttttagtagagatcgggtttcacc--attagccagcatggtcttgatctcctgacctc--gtgacccgcccgcctcagcctcccaaagtgctggg
i gorGor5.CYUI01015556v1    C 0 C 0
s calJac3.chr6               22239212 173 + 158406734 caaacgatcctcctgcctcagcttcccaagtatctgggactacaggcataagccaccatgcctagctaa-tttcggtattttttgtagagacagagtttcaccatattgcccaggctgatctcgaactcctgcactcaagtgatctgcccacctcagcctcccaaagtgctggg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50474994 173 +  54856640 caaacgattctcctgcctcagcttcccaagtaactgggactacaggaataagccaccatgcctggctaa-tttttgtagtttttgtagagacagagtttcaccatattgcccaggctggtctcgaactccttcactcaagtgatctgcccacctcagcctcccaaagtgctggg
i saiBol1.JH378108          C 0 C 0
e micMur3.chr9              113270407 252 + 116334831 I
e proCoq1.NW_012142813v1        15427 336 +     80520 I
e aotNan1.NW_018505940v1     40646598 420 +  42888418 I
e mm10.chr7                  81350491 210 + 145441459 I
e dasNov3.JH570731            1798895 125 +   3943991 I
e canFam3.chr3               54408727 116 +  91889043 I
e cebCap1.NW_016107610v1       618457   0 -   2910086 C
e otoGar3.GL873530             632908 112 -  36342412 I
e panPan2.chr15              80447185  31 +  99763055 I
e colAng1.NW_012117110v1        42084   0 -   1784207 C
e manLeu1.NW_012106908v1        18814   0 -   1397330 C
e chlSab2.chr29              21103638   0 -  24206276 C
e cerAty1.NW_012002657v1        23092   0 -   1987038 C
e macNem1.NW_012011945v1        24936   0 -   2311642 C
e macFas5.chr7              108414492   0 - 171882078 C
e rheMac8.chr7               60887783   0 + 169600520 C
e nomLeu3.chr6               17199689 480 - 121039945 M

a score=28925.000000
s hg38.chr15_KI270850v1_alt    336669 30 +    430880 attacaggcgtgagc---caccg-agcctgcccT
s panTro5.chr15              63490082 30 +  83230942 attacaggcgtgagc---caccg-agcctgcccT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80447216 30 +  99763055 ATTACAGGCGTGAGC---CACCG-AGCCTGCCCT
i panPan2.chr15             I 31 C 0
s gorGor5.CYUI01015556v1        47354 30 -   1709092 attacaggcgtgagc---caccg-agcctgcccT
i gorGor5.CYUI01015556v1    C 0 C 0
s calJac3.chr6               22239385 31 + 158406734 attataggcatgagc---cattgtggtcggccct
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50475167 34 +  54856640 attataggcataagccatcatcatggtcggccct
i saiBol1.JH378108          C 0 C 0
e micMur3.chr9              113270407 252 + 116334831 I
e proCoq1.NW_012142813v1        15427 336 +     80520 I
e aotNan1.NW_018505940v1     40646598 420 +  42888418 I
e mm10.chr7                  81350491 210 + 145441459 I
e dasNov3.JH570731            1798895 125 +   3943991 I
e canFam3.chr3               54408727 116 +  91889043 I
e cebCap1.NW_016107610v1       618457  0 -   2910086 C
e otoGar3.GL873530             632908 112 -  36342412 I
e colAng1.NW_012117110v1        42084  0 -   1784207 C
e manLeu1.NW_012106908v1        18814  0 -   1397330 C
e chlSab2.chr29              21103638  0 -  24206276 C
e cerAty1.NW_012002657v1        23092  0 -   1987038 C
e macNem1.NW_012011945v1        24936  0 -   2311642 C
e macFas5.chr7              108414492  0 - 171882078 C
e rheMac8.chr7               60887783  0 + 169600520 C
e nomLeu3.chr6               17199689 480 - 121039945 M

a score=16586.000000
s hg38.chr15_KI270850v1_alt    336699 3 +    430880 AAT
s panTro5.chr15              63490112 3 +  83230942 AAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80447246 3 +  99763055 AAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        47384 3 -   1709092 AAT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60887783 3 + 169600520 AAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108414492 3 - 171882078 AAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        24936 3 -   2311642 AAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        23092 3 -   1987038 AAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21103638 3 -  24206276 AAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        18814 3 -   1397330 AAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        42084 3 -   1784207 AAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22239416 3 + 158406734 tat
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50475201 3 +  54856640 tat
i saiBol1.JH378108          C 0 C 0
e micMur3.chr9              113270407 252 + 116334831 I
e proCoq1.NW_012142813v1        15427 336 +     80520 I
e aotNan1.NW_018505940v1     40646598 420 +  42888418 I
e mm10.chr7                  81350491 210 + 145441459 I
e dasNov3.JH570731            1798895 125 +   3943991 I
e canFam3.chr3               54408727 116 +  91889043 I
e cebCap1.NW_016107610v1       618457 0 -   2910086 C
e otoGar3.GL873530             632908 112 -  36342412 I
e nomLeu3.chr6               17199689 480 - 121039945 M

a score=89441.000000
s hg38.chr15_KI270850v1_alt    336702 14 +    430880 GCTACTCTTTTAAA
s panTro5.chr15              63490115 14 +  83230942 GCTACCCTTTTAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80447249 14 +  99763055 GCTACCCTTTTAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        47387 14 -   1709092 GCTACTCTTTTAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60887786 14 + 169600520 GCTACTCTTTTAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108414495 14 - 171882078 GCTACTCTTTTAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        24939 14 -   2311642 GCTACTCTTTTAAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        23095 14 -   1987038 GCTACTCTTTTAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21103641 14 -  24206276 GCTACTCTTTTAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        18817 14 -   1397330 GCTACTCTTTTAAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        42087 14 -   1784207 GCTACTCTTTTAAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22239419 11 + 158406734 ---gtaattttaaa
i calJac3.chr6              C 0 I 42
s saiBol1.JH378108           50475204 11 +  54856640 ---gtaattttaaa
i saiBol1.JH378108          C 0 I 42
s cebCap1.NW_016107610v1       618457 14 -   2910086 GCTACTCTTTTAAG
i cebCap1.NW_016107610v1    C 0 C 0
e micMur3.chr9              113270407 252 + 116334831 I
e proCoq1.NW_012142813v1        15427 336 +     80520 I
e aotNan1.NW_018505940v1     40646598 420 +  42888418 I
e mm10.chr7                  81350491 210 + 145441459 I
e dasNov3.JH570731            1798895 125 +   3943991 I
e canFam3.chr3               54408727 116 +  91889043 I
e otoGar3.GL873530             632908 112 -  36342412 I
e nomLeu3.chr6               17199689 480 - 121039945 M

a score=2235658.000000
s hg38.chr15_KI270850v1_alt    336716 423 +    430880 ATGCAGGAAACCCTTTACG----ATACTagtgctgtccgacagaaatataatgtgagctactatgtaactttatttattttttgagacagggtctccctctgtcactcaggctggagtgtaatggc-gtgatctcagctcactgcaacctctgcatcccaggctcaaacaat-ctcctgcctcagcctcccaagtagctgggactacaagcatgagccaccatgcctggctaatttttgtatttttttgtagagacagggtttcaccatattgtccaggctggtcttgaactcctggactcaaacgatctg------------------ccccacctcggcctcccaaagtgccaggattataggtataagccatcatggtcagcccttatgtaactttaaattttctagtagtcacactgaaattttaaaacagtggtgacattaa
s panTro5.chr15              63490129 423 +  83230942 ATGCAGGAAACCCTTTACG----ATACTagtgctgtccgacagaaatataatgtgagctactatgtaactttatttattttttgagacagggtctccctctgtcactcaggctggagtgtaacggc-gtgatctcagctcactgcaacctctgcatcccaggctcaaacaat-ctcctgcctcagcctcccaagtagctgggactacaagcatgagccaccacgcctggctaatttttgtatttttttgtagagacggggtttcaccatattgtccaggctggtcttgaactcctggactcaaacgatctg------------------ccccagctcggcctcccaaagtgccaggattataggtataagccatcacggtcagcccttatgtaactttaaattttctagtagtcacactgaaattttaaaacagtggtgacattaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80447263 423 +  99763055 ATGCAGGAAACCCTTTACG----ATACTagtgctgtccgacagaaatataatgtgagctactatgtaactttatttattttttgagacagggtctccctctgtcactcaggctggagtgtaacggc-gtgatctcagctcactgcaacctctgcatcccaggctcaaacaat-ctcctgcctcagcctcccaagtagctgggactacaagcatgagccaccatgcctggctaatttttgtatttttttgtagagacggggtttcaccatattgtccaggctggtcttgaactcctggactcaaacgatctg------------------ccccagctcggcctcccaaagtgccaggattataggtataagccatcacggtcagcccttatgtaactttaaattttctagtagtcacactgaaattttaaaacagtggtgacattaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        47401 420 -   1709092 ATGCAGGAAACCCTTTACG----ATACTagtgctgtccgacagaaatataatgtgagctactatgtaac----tttattttttgagacagggtctccctctgtcactcaggctggagtgtaacggctgtgatctcagctcactgcaacctctgcatcccaggctcaaacaat-ctcctgcctcagcctcccaagtagctgggactacaagcatgagccaccatgcctggctaatttttgtatttttttgtagagacggggtttcaccatattgtccaggctggtcttgaactcctggactcaaacgatctg------------------ccccacctcggcctcccaaagtgccaggattataggtataagccatcacggtcagcccttatgtaactttaaattttctagtagtcacactgaaattttaaaacagtggtgacattaa
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60887800 415 + 169600520 ATGCAGGAAACCCTTTATG----ATACcagtgctgtccaacagaaatctaatgtgagctacgatgttactttatttattttttgagacagggtctccctctgtcacccaggctggagtataatggc-atgatctcagctccctgcaacctctgcatcccgggatcaaacaatcctcctgcctcagcctcccaagtagctgggactacaggcatgagccaccacgcccggctaatttttgta-ttttttgtagagccagggtttcaccatattgtccaggctggtctcgaactcctggactcaaacgatccg-------------------cccacctcggcctcccgaagtgctgggattatagccataagccgtcacggccagcccttatgtaattttaaattttctagtcatcacattgacattttaa---agtggtgaca----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108414509 415 - 171882078 ATGCAGGAAACCCTTTATG----ATACcagtgctgtccaacagaaatctaatgtgagctacgatgttactttatttattttttgagacagggtctccctctgtcacccaggctggagtataatggc-atgatctcagctccctgcaacctctgcatcccgggatcaaacaatcctcctgcctcagcctcccaagtagctgggactacaggcatgagccaccacgcctggctaatttttgta-ttttttgtagagccagggtttcaccatattgtccaggctggtctcgaactcctggactcaaacgatccg-------------------cccacctcggcctcccgaagtgctgggattatagccataagctgtcacggccagcccttatgtaattttaaattttctagtcatcacattgacattttaa---agtggtgaca----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        24953 415 -   2311642 ATGCAGGAAACCCTTTATG----ATACcagtgctgtccaacagaaatctaatgtaagctacgatgttac----tttattttttgagacagggtctccctctgtcacccaggctggagtataatggc-gtgatctcagctccctgcaacctctgcatcccgggatcaaacaatcctcctgcctcagcctcccaagtagctgggactacaggcatgagccaccacgcctggctaatttttgta-ttttttgtagagccagggtttcaccatattgtccaggctggtctcgaactcctggactcaaacgatccg-------------------cccacctcggcctcccgaagtgctgggattatagccataagccgtcacagccagcccttatgtaattttaaattttctagtcatcacattgacattttaa---agtggtgacattaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        23109 419 -   1987038 ATGCAGGAAACCCTTTATG----ATACcagtgctgtccaacagaaatctaatgtgagctacgatgttactttatttattttttgagacagggtctccctctgtcacccaggctggagtataatggc-gtgatctcagctcactgcaacctctgcatcccgggatcaaacaatcctcctgcctcagcctcccaagtagctgggactacaggcatgagccaccacgcctggctaatttttgta-ttttttgtagagccagggtttcaccatattgtccaggctggtctcgaactcctggactcaaacgatctg-------------------cccacctcagcctcccgaagtgctgggattatagccataagctgtcacggccagcccttatgtaattttaaattttctagtcatcacattgacattttaa---agtggtgacattaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21103655 415 -  24206276 ATGCAGGAAACCCTTTATG----ATACcagtgctgtccaacagaaatctaatgtgagctacgatgttac----tttattttttgagacagggtctccctctgtcacccaggctggagtataatggc-gtgatctcagctcactgcaacctctgcatcccggaatcaaacaatcctcctgcctcagcctcccaagtagctgggactacaggcatgagccaccacgcctggctaatttttgta-ttttttgtagagccagggtttcaccatattgtccaggctggtctcgaactcatggactcaaacgatcca-------------------cccacctcggcctcccgaagtgctgggattatagccataagccatcacggccagcccttatgtaattttaaattttctagtcatcacattgacattttaa---agtggtgacattaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        18831 419 -   1397330 ATGCAGGAAACCCTTTATG----ATACcagtggtgtccaacagaaatctaatgtgagctacgatgttactttatttattttttgagacagggtctccctctgtcacccaggctggagtataatggc-gtgatctcagctcactgcaacctctgcatcccgggatcaaacaatcctcctgcctcagcctcccaagtagctgggactacaggcatgagccaacacgcctggctaatttttgta-ctttttgtagagccagggtttcaccatattgtccaggctggtctcgaactcctggactcaaacgatcca-------------------cccacctcagcctcccgaagtgctgggattatagccataagctgtcacggccagcccttatgtaattttaaattttctagtcatcacattgacattttaa---agtggtgacattaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        42101 439 -   1784207 ATGCAGGAAACCCTTTATG----ATACcagtgctgtccaacagaaatataacgtgagctacaatattactttatttattttttgagacagggtctccctctgtcacccaggctggaatataatggc-gtgatctcagctcactgcaacctctgcatcccgggatcaaacaatcctcctgcctcagcctcccaagtagctgggactacaggcataagccaccacacctggctaa-ttttgta-ttttttgtagagccagggtttcaccatattgtctaggctggtctcgaactcctggactcaaacgatccgtgatcactcaagtgattctcctgcctcagcctcccgaagtgctgggattatagccataagccatcatggccagcccttacgtaattttaaattttctagtcatcacattgacattttaa-acagtggtgacattaa
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107610v1       618471 404 -   2910086 ATGCAGGAAACCCTTTACTATGCATACAagtgctgtccaacagaaatataatgtgagctactatgtaacttt----------------Agagtctccctctctcacccaggctggagtataatggc-gtg-----agctcactgcaacctctgcatcccgggctcaaacaattctcctgcctcagcttcccaagtaactgggactacaggcataagccaccatgcctggctaatttttgta-ttttttgtagagacagagtttcaccatattgcccaggctggtctcgaactcctgcactcaagtgatctg-------------------cccacctcagcctcccaaagtgcttggattatagacatgagccatcacggtcggcccttatgtcattttaaattttctagtagccacattgaaattttaa-acagtagtgacattaa
i cebCap1.NW_016107610v1    C 0 C 0
e micMur3.chr9              113270407 252 + 116334831 I
e proCoq1.NW_012142813v1        15427 336 +     80520 I
e aotNan1.NW_018505940v1     40646598 420 +  42888418 I
e mm10.chr7                  81350491 210 + 145441459 I
e calJac3.chr6               22239430  42 + 158406734 I
e dasNov3.JH570731            1798895 125 +   3943991 I
e canFam3.chr3               54408727 116 +  91889043 I
e otoGar3.GL873530             632908 112 -  36342412 I
e nomLeu3.chr6               17199689 480 - 121039945 M
e saiBol1.JH378108           50475215  42 +  54856640 I

a score=1292252.000000
s hg38.chr15_KI270850v1_alt    337139 300 +    430880 ttttaataatatattttattggccgggcacggtggctcacacctgtaaacccagtgctttgggaggccaaggtgggcggatcatgaggtcaagagatggagaccatcctggctaacatggtgaaacc--------------------ccgtctctactaaaaatacaaaaattagctgagcgtggtggcgcacacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagctgagatagcaccactgcactccagcacggcaacagagtgagactccatctc--------a
s panTro5.chr15              63490552 300 +  83230942 ttttaataatatattttattggccgggcacggtggctcacacctgtaaacccagcactttgggaggccaaggtgggcggatcatgaggtcaagagatggagaccatcctggctaacatggtgaaacc--------------------ccgtctctactaaaaatacaaaaattagctgagcgtggtggcgcacacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcagaagttgcagtgagctgagatagcaccactgcactccagcacggcaacagagtgagactccatctc--------a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80447686 300 +  99763055 ttttaataatatattttattggccgggcacggtggctcacacctgtaaacccagcactttgggaggccaaggtgggcggatcatgaggtcaagagatggagaccatcctggctaacatggtgaaacc--------------------ccgtctctactaaaaatacaaaaattagctgagcgtggtggcgcacacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcagaagttgcagtgagctgagatagcaccactgcactccagcacggcaacagagtgagactccatctc--------a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        47821 300 -   1709092 ttttaataatatattttattggccgggcacggtggctcacacctgtaaacccagcgctttgggaggccaaggtgggcggatcatgaggtcaagagatggagaccatcctggctaacatggtgaaacc--------------------ccgtctctactaaaaatacaaaaattagctgagcgtggtggcgcacacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagctgagatagcaccactgcactccagcacagcaacagagtgagactccatctc--------a
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60888215 239 + 169600520 --ttaataatatattttattggccgggcacgatggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagatcatgaggtcaagagatggagaacatcctggccaacatggtgaaaccnnnnnnnnnnnnnnnnnnnn-----------------------------------------------------------------------------------gaatcacttgaacccagaaggcagaggctgcagtgagccaagatcacaccacagtactccagcacggcaacagagtgagactccatctc----aaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108414924 303 - 171882078 --ttaataatatattttattggccgggcacgatggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagatcatgaggtcaagagatggagaacatcctggccaacatggtgaaacc--------------------ctgtcgccactaaaaatacaaaaattagctgagcgtggtggcagacgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttggacccagaaggcagaggctgcagtgagccgagatcacaccacagtactccagcacggcaacagagtgagactccatctc---aaaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        25368 308 -   2311642 ttttaataatatattttattggccgggcacgatggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagatcatgaggtcaagagatggagaacatcctggccaacatggtgaaacc--------------------ctgtcgccactaaaaatacaaaaattagctgagcgtggtggcagacgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccagaaggcagaggctgcagtgagccgagatcacaccacagtactccagcacggcaacagagtgagactccatctcaaaaaaaaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        23528 304 -   1987038 ttttaataatatattttattggccgggcacgatggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagagcatgaggtcaagagatggagaacatcctggccaacatggtgaaacc--------------------ctgtctccactaaaaatacaaaaattagctgagcgtggtggcagacgcctgtagtcccagctactcaggaggctgaggcaggagaactga--gaacccaggaggcggaggctgcagtgagccgagatcacaccacagtactccagcacggcaacagagtgagactccatctc--aaaaaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21104070 305 -  24206276 ttttaataatatattttattggccatgcatgatggctcacacttgtaatcccagcactttgggaggccaaggtgggcagatcatgaggtcaagagacggagaacatcctggccaacatggtgaaacc--------------------ctatctccactaaaaatacaaaaattagctgagcgtggtggcagacgcctgtagtcccagttactcaggaggctgaggcaggagaatcacttgaacccaggaggcggaggctgcagtgagccgagatcacaccatagtactccagcatggcaacacagtgagactccatctc---aaaaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        19250 304 -   1397330 ttttaataatatattttattggccgggcacgatggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagagcatgaggtcaagagatggagaacatcctggccaacatggtgaaacc--------------------ctgtctccactaaaaatacaaaaattagctgagcgtggtggcagacgcctgtagtcccagctactcaggaggctgaggcaggagaactga--gaacccaggaggcagaggctgcagtgagccgagatcacaccacagtactccagcacggcaacagagtgagactccatctc--aaaaaaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        42540 302 -   1784207 ttttaataatatattttattggctgggcatgatggctcatgcctgtaatcccagcactttgggaggccaaggtgggcagatcatgaggtcaagagatggagaacattccggccaacatggtgaaacc--------------------ccgtctccactaaaaatacaaaaattagctgagcatggtggcagacgcctgtagttccagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcggaggctgcagtgagccgagatcgcaccactgcactccagcacggcaaca----gagactccatctc--aaaaaaa
i colAng1.NW_012117110v1    C 0 C 0
e micMur3.chr9              113270407 252 + 116334831 I
e proCoq1.NW_012142813v1        15427 336 +     80520 I
e aotNan1.NW_018505940v1     40646598 420 +  42888418 I
e mm10.chr7                  81350491 210 + 145441459 I
e calJac3.chr6               22239430  42 + 158406734 I
e dasNov3.JH570731            1798895 125 +   3943991 I
e canFam3.chr3               54408727 116 +  91889043 I
e cebCap1.NW_016107610v1       618875   0 -   2910086 C
e otoGar3.GL873530             632908 112 -  36342412 I
e nomLeu3.chr6               17199689 480 - 121039945 M
e saiBol1.JH378108           50475215  42 +  54856640 I

a score=27676.000000
s hg38.chr15_KI270850v1_alt    337439 5 +    430880 aaaaa
s panTro5.chr15              63490852 5 +  83230942 aaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80447986 5 +  99763055 aaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        48121 5 -   1709092 aaaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60888454 5 + 169600520 aaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108415227 5 - 171882078 aaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        25676 5 -   2311642 aaaaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        23832 5 -   1987038 aaaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21104375 5 -  24206276 aaaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        19554 5 -   1397330 aaaaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        42842 5 -   1784207 aaaaa
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873530             633020 5 -  36342412 aataa
i otoGar3.GL873530          I 112 C 0
e micMur3.chr9              113270407 252 + 116334831 I
e proCoq1.NW_012142813v1        15427 336 +     80520 I
e aotNan1.NW_018505940v1     40646598 420 +  42888418 I
e mm10.chr7                  81350491 210 + 145441459 I
e calJac3.chr6               22239430 42 + 158406734 I
e dasNov3.JH570731            1798895 125 +   3943991 I
e canFam3.chr3               54408727 116 +  91889043 I
e cebCap1.NW_016107610v1       618875 0 -   2910086 C
e nomLeu3.chr6               17199689 480 - 121039945 M
e saiBol1.JH378108           50475215 42 +  54856640 I

a score=11692.000000
s hg38.chr15_KI270850v1_alt    337444 3 +    430880 aaa
s panTro5.chr15              63490857 3 +  83230942 aat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80447991 3 +  99763055 aat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        48126 3 -   1709092 aaa
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60888459 3 + 169600520 aaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108415232 3 - 171882078 aat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        25681 3 -   2311642 aaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        23837 3 -   1987038 aaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21104380 3 -  24206276 aaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        19559 3 -   1397330 aaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        42847 3 -   1784207 aat
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22239472 3 + 158406734 aat
i calJac3.chr6              I 42 C 0
s saiBol1.JH378108           50475257 3 +  54856640 aat
i saiBol1.JH378108          I 42 C 0
s otoGar3.GL873530             633025 3 -  36342412 cat
i otoGar3.GL873530          C 0 C 0
e micMur3.chr9              113270407 252 + 116334831 I
e proCoq1.NW_012142813v1        15427 336 +     80520 I
e aotNan1.NW_018505940v1     40646598 420 +  42888418 I
e mm10.chr7                  81350491 210 + 145441459 I
e dasNov3.JH570731            1798895 125 +   3943991 I
e canFam3.chr3               54408727 116 +  91889043 I
e cebCap1.NW_016107610v1       618875 0 -   2910086 C
e nomLeu3.chr6               17199689 480 - 121039945 M

a score=1365.000000
s hg38.chr15_KI270850v1_alt    337447 1 +    430880 a
s calJac3.chr6               22239475 1 + 158406734 a
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50475260 1 +  54856640 a
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40647018 1 +  42888418 a
i aotNan1.NW_018505940v1    I 420 C 0
s otoGar3.GL873530             633028 1 -  36342412 a
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54408843 1 +  91889043 a
i canFam3.chr3              I 116 C 0
e micMur3.chr9              113270407 252 + 116334831 I
e proCoq1.NW_012142813v1        15427 336 +     80520 I
e mm10.chr7                  81350491 210 + 145441459 I
e dasNov3.JH570731            1798895 125 +   3943991 I
e cebCap1.NW_016107610v1       618875 0 -   2910086 C
e panPan2.chr15              80447994 0 +  99763055 C
e colAng1.NW_012117110v1        42850 0 -   1784207 C
e manLeu1.NW_012106908v1        19562 0 -   1397330 C
e chlSab2.chr29              21104383 0 -  24206276 C
e cerAty1.NW_012002657v1        23840 0 -   1987038 C
e macNem1.NW_012011945v1        25684 0 -   2311642 C
e macFas5.chr7              108415235 0 - 171882078 C
e rheMac8.chr7               60888462 0 + 169600520 C
e nomLeu3.chr6               17199689 480 - 121039945 M
e gorGor5.CYUI01015556v1        48129 0 -   1709092 C
e panTro5.chr15              63490860 0 +  83230942 C

a score=28140.000000
s hg38.chr15_KI270850v1_alt    337448 3 +    430880 ttt
s panTro5.chr15              63490860 3 +  83230942 ttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80447994 3 +  99763055 ttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        48129 3 -   1709092 ttt
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60888462 3 + 169600520 ttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108415235 3 - 171882078 ttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        25684 3 -   2311642 ttt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        23840 3 -   1987038 att
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21104383 3 -  24206276 att
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        19562 3 -   1397330 att
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        42850 3 -   1784207 ttt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22239476 3 + 158406734 ttt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50475261 3 +  54856640 ttt
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40647019 3 +  42888418 ttt
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             633029 3 -  36342412 ttt
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54408844 3 +  91889043 ttt
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1799020 3 +   3943991 ttt
i dasNov3.JH570731          I 125 C 0
e micMur3.chr9              113270407 252 + 116334831 I
e proCoq1.NW_012142813v1        15427 336 +     80520 I
e mm10.chr7                  81350491 210 + 145441459 I
e cebCap1.NW_016107610v1       618875 0 -   2910086 C
e nomLeu3.chr6               17199689 480 - 121039945 M

a score=1073001.000000
s hg38.chr15_KI270850v1_alt    337451 120 +    430880 tatttaaccctatatgttaataatatt---atttccaaatgtgaCAACAGCTGTGTTTCCAAAACTCAATGGGGCCACATTTAGCTGGTAGCTACCATATTCGTACCATATTTGACAGTGGAG
s panTro5.chr15              63490863 120 +  83230942 tatttaaccctatatgttaataatatt---atttccaaatgtgaCAACAGCTGTGTTTCCAAAACTCAATGGGGCCACATTTAGCTGGTGGCTACCATATTCGTACCATATTTGACAGTGGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80447997 120 +  99763055 tatttaaccctatatgttaataatatt---atttccaaatgtgaCAACAGCTGTGTTTCCAAAACTCAATGGGGCCACATTTAGCTGGTGGCTACCATATTCGTACCATATTTGACAGTGGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        48132 120 -   1709092 tatttaaccctatatgttaataatatt---atttccaaatgtgaCAACAGCTGTGTTTCCAAAACTCAGTGGGGCCACATTTAGCTGGTGGCTACCATATTCGTACCATATTTGACAGTGGAG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60888465 120 + 169600520 tatttaaccctgtatgttaaaagtatt---atttccaaatgtgacaacagccatgtttccaaaactcaatggggccacatttagctggtggctaccatattCGTACCATATTTGACAGTGGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108415238 120 - 171882078 tatttaaccctgtatgttaaaaatatt---atttccaaatgtgacaacagccatgtttccaaaactcaatggggccacatttagctggtggctaccatattCGTACCATATTTGACAGTGGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        25687 120 -   2311642 tatttaaccctgtatgttaaaaatatt---atttccaaatgtgacaacagccatgtttccaaaactcaatggggccacatttagctggtggctaccatattCGTACCATATTTGACAGTGGAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        23843 120 -   1987038 tatttaaccctgtatgttaaaaatatt---atttccaaatgtgacaacagccatgtttccaaaactcaatggggccacatttagctggtggctaccatattCATACCATATTTGACAGTGGAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21104386 120 -  24206276 tatttaaccctgtatgttaaaaatatt---atttccaaatgtgacaacagccatgtttccgaaactcgatggggccacatttagctggtggctaccatattCGTACCATATTTGACAGTGGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        19565 120 -   1397330 tatttaaccctgtatgttaaaaatatt---atttccaaatgtgacaacagccatgtttccaaaactcaatggggccacatttagctggtggctaccatattTGTACCATATTTGACAGTGGAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        42853 120 -   1784207 tatttaaccctatatattaaaaatatt---atttccaaatgtgacaatagccatgtttccaaaactcaatggggccacatttagctggtggctaccatattCGTACCATATTTGACAGTGGAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22239479 100 + 158406734 tatttaaccctatatgttaaaaatatt---atttccaaatatgacactagccgtgttttcagaactcagt--agccacatttagctggtggctaccatattt------------------gaG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50475264 100 +  54856640 tatttaaccctacatgttaaaaatatt---atttccaaATATGAcacaagccgtgttttcagaactcagt--agccacatttagctggtggctaccatattc------------------gaG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       618875 100 -   2910086 tatttgaccctatatgttaaaaatatt---atttccaaatatgacactagccatgttttcagaactcagt--agccacatttagctggtggctaccatattc------------------gaG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40647022 100 +  42888418 tatttaaccctatatgttaaaaatatt---atttccaaatatgacactagccgtgttttcagaactcagt--agccacatttagctggtggctaccatattc------------------gaG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             633032 106 -  36342412 catttaaccctgtgtgtctaaaatgtt---attt-cacatgcagcactagc--tgttttaagcactcaac--agccacacttagctggtggctaacatattagTGCATTTT---------CAG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54408847  94 +  91889043 tatttaatccagtatatccaaaatattatcatttcaacatgtGCCACTAACCATATCTTAAGCATTCAGC--AAGCACATTCA---------------------------TTCAACAGTGTAG
i canFam3.chr3              C 0 I 8
s dasNov3.JH570731            1799023 109 +   3943991 tatttaatccaatatatccaaattatc---atttcaacttgtggctctagtcacattt-caagtcctaat--ggccacact--------ggctaatacatggccaccatattagacagtgaag
i dasNov3.JH570731          C 0 I 6
e micMur3.chr9              113270407 252 + 116334831 I
e proCoq1.NW_012142813v1        15427 336 +     80520 I
e mm10.chr7                  81350491 210 + 145441459 I
e nomLeu3.chr6               17199689 480 - 121039945 M

a score=218223.000000
s hg38.chr15_KI270850v1_alt    337571 23 +    430880 ATCATGTTAGCGTGAACCATTCA
s panTro5.chr15              63490983 23 +  83230942 ATCATGTTAGCGTGAACCATTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80448117 23 +  99763055 ATCATGTTAGCGTGAACCATTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        48252 23 -   1709092 ATCATGTTAGCGTGAACCATTCA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60888585 23 + 169600520 ATCATGTTAGCGCAAACCATTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108415358 23 - 171882078 ATCATGTTAGCGCAAACCATTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        25807 23 -   2311642 ATCATGTTAGCGCAAACCATTCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        23963 23 -   1987038 ATCATGTTAGCGCAAACCATTCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21104506 23 -  24206276 ATCATGTTAGCACAAACCATTCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        19685 23 -   1397330 ATCATGTTAGCGCAAACCATTCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        42973 23 -   1784207 ATCATGTTAGTGCAAACCATTCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22239579 23 + 158406734 ATCATGTTGGCAGGAACCACGCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50475364 23 +  54856640 ATCATGTTGGCAGGAACCACGCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       618975 23 -   2910086 ATCATGTTGGCAGGAACCACGCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40647122 23 +  42888418 ATCATGTTGGCAGGAACCACATA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             633138  6 -  36342412 ATCATG-----------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81350701 21 + 145441459 ATCACGTTGATATAAACCATT--
i mm10.chr7                 I 210 C 0
s canFam3.chr3               54408949 23 +  91889043 ACTGTGGTGGCACAAACCACTCA
i canFam3.chr3              I 8 C 0
s dasNov3.JH570731            1799138 23 +   3943991 accatctTGGCATAAATCATTCA
i dasNov3.JH570731          I 6 C 0
e micMur3.chr9              113270407 252 + 116334831 I
e proCoq1.NW_012142813v1        15427 336 +     80520 I
e nomLeu3.chr6               17199689 480 - 121039945 M

a score=476472.000000
s hg38.chr15_KI270850v1_alt    337594 64 +    430880 GGAATGGGGGAAGAATTTGCAGATCAAGAT-----GGGAAGGAAA-----------------------GATAAGGGACT-CCTTCAGTGCAGG
s panTro5.chr15              63491006 44 +  83230942 GGAATGGGGGAAGAATTTGCAGATCAAGAT-----GGGAAGGGAA-----------------------GATA---------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80448140 44 +  99763055 GGAATGGGGGAAGAATTTGCAGATCAAGAT-----GGGAAGGGAA-----------------------GATA---------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        48275 64 -   1709092 GGAATGGGGGAAGAATTTGCAGATCAAGAT-----GGGAAGGGAA-----------------------GAGAAGGGACT-CCTTCAGTGCAGG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60888608 83 + 169600520 GGAATGGGGGAAGAATTTGCTGATCAAGATggca-gggtagggcagggcagggcagggca--------gggACGGGACT-CCTTCAGTGCAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108415381 83 - 171882078 GGAATGGGGGAAGAATTTGCTGATCAAGATggca-gggcagggcagggcagggcagggca--------gggACGGGACT-CCTTCAGTGCAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        25830 78 -   2311642 GGAATGGGGGAAGAATTTGCTGATCAAGAT------ggcagggcagggcagggcagggca--------gggACGGGACT-CCTTCAGTGCAGG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        23986 78 -   1987038 GGAATGGGGGAAGAATTTGGTGATCAAGAT------GGCAGGGCAGGGCAGGGCAGGGAC--------GGGACGGGACT-CCTTCAGTGCAGG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21104529 73 -  24206276 GGAATGGGGGAAGAATTTGCTGATCAAGATGGCA-GGGCAGGGCAGGGCAG------------------GGACGGGACT-CCTTCAGTGCAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        19708 83 -   1397330 GGAATGGGGGAAGAATTTGCTGATCAAGATggca-gggcagggcagggcagggcagggac--------aggACGGGACT-CCTTCAGTGCAGG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        42996 92 -   1784207 AGAATGGGGGAAGAATCTGCAGATCAAgatgggatgggaagggaagggagggggaggggaaggggaaggggaagggACT-CCTTCAGTGCAGG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22239602 59 + 158406734 GGAATAGGGGAAGAATCTACAGATCAAGAT----------AGGAA-----------------------GGGAAGGGACT-CCTTCAGTGCAGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50475387 60 +  54856640 GGAATAGGGGAAGAATCTGCAGATCAAGAT-----G----GGGAA-----------------------GGGAAGGGACT-CCTTCAGTGCAGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       618998 60 -   2910086 GGAATAGGGGAAGAATCTGCAGATCAAGGT-----G----GGGAA-----------------------GGGAAGGCACT-CCTTCAGTGCAGG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40647145 64 +  42888418 GGAATAGGGGAAGAATGTGCAGATCAAGAT-----GGGAAGGGAA-----------------------GGGAAGGGATT-CCTTCAGTGCAGG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113270659 59 + 116334831 GGAATGGGGGAAGGATGTGCAGAACAAAAT----------GGGAA-----------------------GGGAAGGGACT-CCTCCAGTGCAGG
i micMur3.chr9              I 252 I 34
s otoGar3.GL873530             633144 57 -  36342412 -AATTGGGGGAAGGATGTGCAGAACAAAAT----------GGAGA-----------------------GAAAAGAGACT-CCTCTAATGTAG-
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81350722 38 + 145441459 -----GGGTAAAG---------------------------AGGAA-----------------------GGGAAGGGGCTCCCTCCAGTGCAGG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54408972 61 +  91889043 GAGGTGGGAGAGGGATTTGCTGAGTGAAAT-----GG---GGGGT-----------------------GGGGAGAGACT-CCTCTAGTGCAGG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1799161 59 +   3943991 ACAGTCAGGGAAGGATGTGCTGCTTGAAAT----------GGGCA-----------------------AGGAAGGGACT-CCTCTAGTGTAGA
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        15427 336 +     80520 I
e nomLeu3.chr6               17199689 480 - 121039945 M

a score=132396.000000
s hg38.chr15_KI270850v1_alt    337658 17 +    430880 TA-GAGCATAGGTTAAGG-
s panTro5.chr15              63491050 15 +  83230942 ---GAGCATAGGTTAAGG-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80448184 15 +  99763055 ---GAGCATAGGTTAAGG-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        48339 17 -   1709092 TA-GAGCATAGGTTAAGG-
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60888691 17 + 169600520 TAGAAGCATAGG-TAAGG-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108415464 17 - 171882078 TAGAAGCATAGG-TAAGG-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        25908 17 -   2311642 TAGAAGCATAGG-TAAGG-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        24064 17 -   1987038 TAGAAGCATAGG-TAAGG-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21104602 17 -  24206276 TAGAAGCATAGG-TAAGG-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        19791 17 -   1397330 TAGAAGCATAGG-TAAGG-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        43088 17 -   1784207 TAGAAGCATAGG-TAGGG-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22239661 17 + 158406734 TAGAAGCATAGG-TAAGG-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50475447 17 +  54856640 TGGAAGCATAGG-TAAGG-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       619058 17 -   2910086 CAGAAGCATAGG-TAAGG-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40647209 17 +  42888418 TAGAAGCATAGG-TAAGG-
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             633201 16 -  36342412 -CAAAGCACAGG-GAAGG-
i otoGar3.GL873530          C 0 I 4
s mm10.chr7                  81350760 15 + 145441459 TAGATGCAGAGG---AGG-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54409033 13 +  91889043 CAGATGCACAGG-C-----
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1799220 18 +   3943991 GATACACACAGG-TAAGGT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113270718 34 + 116334831 I
e proCoq1.NW_012142813v1        15427 336 +     80520 I
e nomLeu3.chr6               17199689 480 - 121039945 M

a score=152295.000000
s hg38.chr15_KI270850v1_alt    337675 13 +    430880 TTAAAGGATTCAG
s panTro5.chr15              63491065 13 +  83230942 TTAAAGGATTCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80448199 13 +  99763055 TTAAAGGATTCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        48356 13 -   1709092 TTAAAGGATTCAG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60888708 13 + 169600520 TTAAAGGTTTCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108415481 13 - 171882078 TTAAAGGTTTCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        25925 13 -   2311642 TTAAAGGTTTCAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        24081 13 -   1987038 TTAAAGGTTTCAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21104619 13 -  24206276 TTAAAGGTTTCAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        19808 13 -   1397330 TTAAAGGTTTCAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        43105 13 -   1784207 TTAAAGGTTTCAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22239678 13 + 158406734 TTGAAGGGTTCAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50475464 13 +  54856640 TTGAAGGATTCGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       619075 13 -   2910086 TTGAAGGGCTCAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40647226 13 +  42888418 TTGAAGGGTTCAG
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        15763 13 +     80520 TTAAAGGGTTCAG
i proCoq1.NW_012142813v1    I 336 C 0
s otoGar3.GL873530             633221 13 -  36342412 TTAAAGGGTTCAG
i otoGar3.GL873530          I 4 C 0
s mm10.chr7                  81350775 13 + 145441459 TCTACGGGCTCAG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54409046  9 +  91889043 ---AGGGTTACA-
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1799238 13 +   3943991 TAAAAAGGTTCAG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113270718 34 + 116334831 I
e nomLeu3.chr6               17199689 480 - 121039945 M

a score=425831.000000
s hg38.chr15_KI270850v1_alt    337688 28 +    430880 AGTGGAAGCCAAGATGCAGATAGAACAC
s panTro5.chr15              63491078 28 +  83230942 AGTGGAAGCCAAGATGCAGATAGAACAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80448212 28 +  99763055 AGTGGAAGCCAAGATGCAGATAGAACAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        48369 28 -   1709092 AGTGGAAGCCAAGATGCAGATAGAACAC
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60888721 28 + 169600520 AGTGGAAGCCAAGATGCAGATAGAACAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108415494 28 - 171882078 AGTGGAAGCCAAGATGCAGATAGAACAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        25938 28 -   2311642 AGTGGAAGCCAAGATGCAGATAGAACAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        24094 28 -   1987038 AGTGGAAGCCAAGATGCAGATAGAACAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21104632 28 -  24206276 AGTGGAAGCCAAGATGCAGATAGAACAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        19821 28 -   1397330 AGTGGAAGCCAAGATGCAGATAGAACAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        43118 28 -   1784207 AGTGGAAGCCAAGATGCAGATAGAACAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22239691 28 + 158406734 AGTGGAAGCCAAGATGCAGATAGAACAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50475477 28 +  54856640 AGTGGAAGCCAAGATGCAGATAGAACAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       619088 27 -   2910086 AGTGGAAGCCAAGA-GCAGACAGAACAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40647239 28 +  42888418 AGTGGAAGCCAAGATGCAGATAGAACAC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113270752 28 + 116334831 AGTGGAAACCAAAATGCACATAGAATGC
i micMur3.chr9              I 34 C 0
s proCoq1.NW_012142813v1        15776 28 +     80520 AGTGGAAACCAAAATGCAGAGAGAACGC
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             633234 28 -  36342412 GGTGGAAACCAAGAGGTACACAGAACAC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81350788 25 + 145441459 -GCAGAAACCACA--GCAAACTAAACTG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54409055 28 +  91889043 AGTGGGAAGCCAGGTACAGAGAGAACAC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1799251 28 +   3943991 AGTAGAAATCAAGATGCAGACAGAATAC
i dasNov3.JH570731          C 0 C 0
e nomLeu3.chr6               17199689 480 - 121039945 M

a score=233299.000000
s hg38.chr15_KI270850v1_alt    337716 19 +    430880 TTGTCTGAAG-----GGT--AAGCCC
s panTro5.chr15              63491106 19 +  83230942 TTGTCTGAAG-----GGT--AAGCCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80448240 19 +  99763055 TTGTCTGAAG-----GGT--AAGCCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        48397 19 -   1709092 TTGTCTGAAG-----GGT--AAGCCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17200169 19 - 121039945 TTGTCTGAAG-----GGT--AAGCCC
i nomLeu3.chr6              M 480 C 0
s rheMac8.chr7               60888749 19 + 169600520 TTGTCTGAAG-----GGT--AAGCCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108415522 19 - 171882078 TTGTCTGAAG-----GGT--AAGCCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        25966 19 -   2311642 TTGTCTGAAG-----GGT--AAGCCC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        24122 19 -   1987038 TTGTCTGAAG-----GGT--AAGCCC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21104660 19 -  24206276 TTGTCTGAAG-----GGT--AAGCCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        19849 19 -   1397330 TTGTCTGAAG-----GGT--AAGCCC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        43146 24 -   1784207 TTGTCTGAAGGGTAAGGT--AAGCCC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22239719 19 + 158406734 ATCTCTGAAG-----GGT--AAGCCG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50475505 19 +  54856640 TTCTCTGAAG-----GGT--AAGCCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       619115 19 -   2910086 TTCTCTGAAG-----GGT--AAGCTC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40647267 21 +  42888418 TTCTCTGAAG-----GGTAAAAGCCC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113270780 19 + 116334831 TTCTCTGAAG-----GGT--AGACCC
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        15804 19 +     80520 TTCTCTGAAG-----GGT--AGGCCC
i proCoq1.NW_012142813v1    C 0 I 8
s otoGar3.GL873530             633262 19 -  36342412 GTCTTTGAAG-----GGC--AGGCCC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81350813 18 + 145441459 -TTTCCAAAG-----GGC--AGGAAC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54409083 17 +  91889043 CTCTCTGAAG-----GGA--GGGC--
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1799279  2 +   3943991 ----CT--------------------
i dasNov3.JH570731          C 0 C 0

a score=84451.000000
s hg38.chr15_KI270850v1_alt    337735 6 +    430880 AGCAGT
s panTro5.chr15              63491125 6 +  83230942 AGCAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80448259 6 +  99763055 AGCAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        48416 6 -   1709092 AGCAGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17200188 6 - 121039945 AGCAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60888768 6 + 169600520 AGCAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108415541 6 - 171882078 AGCAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        25985 6 -   2311642 AGCAGT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        24141 6 -   1987038 AGCAGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21104679 6 -  24206276 AGCAGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        19868 6 -   1397330 AGCAGT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        43170 6 -   1784207 AGCAGT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22239738 6 + 158406734 AACAGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50475524 6 +  54856640 AGCAGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       619134 6 -   2910086 AGCAGT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40647288 6 +  42888418 AGCAGT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113270799 6 + 116334831 AGCAGT
i micMur3.chr9              C 0 I 131
s otoGar3.GL873530             633281 5 -  36342412 AGAAG-
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81350831 6 + 145441459 AGCACT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54409100 6 +  91889043 AGCAGG
i canFam3.chr3              C 0 C 0
e proCoq1.NW_012142813v1        15823 8 +     80520 I
e dasNov3.JH570731            1799281 0 +   3943991 C

a score=53353.000000
s hg38.chr15_KI270850v1_alt    337741 6 +    430880 TGAACT
s panTro5.chr15              63491131 6 +  83230942 TGAACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80448265 6 +  99763055 TGAACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        48422 6 -   1709092 TGAACT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17200194 6 - 121039945 TGAACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60888774 6 + 169600520 TGAACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108415547 6 - 171882078 TGAACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        25991 6 -   2311642 TGAACT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        24147 6 -   1987038 TGAACT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21104685 6 -  24206276 TGAACT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        19874 6 -   1397330 TGAACT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        43176 6 -   1784207 TGAACT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22239744 6 + 158406734 TGAACT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50475530 6 +  54856640 TGAACT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       619140 6 -   2910086 TGAACT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40647294 6 +  42888418 TGAACT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             633286 2 -  36342412 --AA--
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81350837 6 + 145441459 CAAGCC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54409106 5 +  91889043 -CAACC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1799281 2 +   3943991 -CA---
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113270805 131 + 116334831 I
e proCoq1.NW_012142813v1        15823 8 +     80520 I

a score=2107412.000000
s hg38.chr15_KI270850v1_alt    337747 141 +    430880 GAACCTCTCCTAGCCCTTAGGCACTCTGGAGACCT-------ATTAAGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTTCCTCCTCCGCTCCTGGGGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGTATTGGTGAGTACATGG
s panTro5.chr15              63491137 141 +  83230942 GAACCTCTCCTAGCCCTTAGGCACTCTGGAGACCT-------ATTAAGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTTCCTCCTCCGCTCCTGCGGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGTATTGGTGAGTACATGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80448271 141 +  99763055 GAACCTCTCCTAGCCCTTAGGCACTCTGGAGACCT-------ATTAAGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTTCCTCCTCCGCTCCTGCGGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGTATTGGTGAGTACATGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        48428 141 -   1709092 GAACCTCTCCTAGCCCTTAGGCACTCTGGAGACCT-------ATTAAGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTTCCTTCTCCGCTCCTGCGGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGTATTGGTGAGTACATGG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17200200 141 - 121039945 GAACCTCTCCTAGCCTGGAGGCACTCTGGAGACCT-------ATTAAGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTGCCTCCTCCGCTCCTGCGGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGCACTGGTGAGTACGCGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60888780 141 + 169600520 GAACCTCTCCTAGCCTGGAGGCACTCTGGAGACCT-------ATTAGGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTGCCTCCTCCGCTCCTGCAGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGCATTGGTAAGTACACGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108415553 141 - 171882078 GAACCTCTCCTAGCCTGGAGGCACTCTGGAGACCC-------ATTAGGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTGCCTCCTCCGCTCCTGCAGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGCATTGGTAAGTACACGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        25997 141 -   2311642 GAACCTCTCCTAGCCTGGAGGCACTCTGGAGACCT-------ATTAGGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTGCCTCCTCCGCTCCTGCAGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGCATTGGTAAGTACACGG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        24153 141 -   1987038 GAACCTCTCCTAGCCTGGAGGCACTCTGGAGACCT-------ATTAGGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTGCCTCCTCCGCTCCTGCAGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGCATTGGTAAGTACACGG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21104691 141 -  24206276 GAACCTCTCCTAGCCTGGAGGCACGCTGGAGACCT-------ATTAGGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTGCCTCCTCCGCTCCTGTAGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGCATTGGTAAGTACACGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        19880 141 -   1397330 GAACCTCTCCTAGCCTGGAGGCACTCTGGAGACCT-------ATTAGGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTGCCTCCTCCGCTCCTGCAGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGCATTGGTAAGTACACGG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        43182 141 -   1784207 GAACCTCTCCTAGCCTGGTGGCACTCTGGAGACCT-------ATTAAGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTGCCTCCTCCGCTCCTGCAGCTTCTGAAGTCCCTGTTCTCAATCTGCTGCACAGCATTGGTAAGTACACGG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22239750 141 + 158406734 GAACCTCTCCTAGCCAGGAGGCACTCTGGAGACCT-------ATTAGGAGAGCTGGAAGAAGCCCCATCCTGCCAAGTGTCGCCTCTGCCCCTGCAGCTTCTGAAGTCCCTGTTCTTAATCTGCTGCACAGCATCGGTGAGTACACGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50475536 141 +  54856640 GAACCTCTCCTAGCCTGGAGGCACTCTGGAGACCT-------ATTAGGGGAGCTGGAAGAAGCCCCATCCTGCCAAGTGCCGCCTCTGCCCCTGCAGCTTCTCAAGTCCCTGTTCTTAATCTGCTGCACAGCATTGGTGAGTACACGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       619146 141 -   2910086 GAACCTCTCCTAGCCTGGAGGCACTCTGGAGACCT-------ATTAGGGGAGCTGGAAGAAGCCCCATCCTGCCAAGTGCCGCCTCTGCCCCTGCAGCTTCTGAAGTCGCTGTTCTTAATCTGCTGCACAGCATTGGTGAGTACACGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40647300 140 +  42888418 GAACCTCTCCTAGCCTGGAGGCACTCTAGAGACCT-------ATT-GGGGAGCTGGAAGAAGCCCCATCCTGCCAAGTGCCGCCTCTGCCCCTGCAGCTTCTGAAGTCCCTGTTCTTAATCTGCTGCACAGCATTGGTGAGTACACGA
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        15831 141 +     80520 AAACCCTTCCTGGCCTAGAGGTACTCTGGAGGCCT-------AGCAGGAGAGCCAGAAGAAGCCCAATCCTGCCAAGTGCCACCTCCACCTCTGCAGCCTCTGAAGCCCCTGTTCTTAATCTGCAGCACAGCACTGATGAGCACACAA
i proCoq1.NW_012142813v1    I 8 C 0
s otoGar3.GL873530             633288 137 -  36342412 AGACCCCTCCTGGCCTGGAGGTACTTTGGAGACCT-------AGCAGGAGAGCCCGAAGAAGCCCAATCTTGCCAAGAGCTGCCTCCGCC-CCACAGCC-CTGCA-CCCCTGTTGTTAA-CTGCAGCACAGCCCTGATGGGCACACAG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81350843 141 + 145441459 -----TTGCCGTTCCCAGAGGTACCGTAGAGAACTAGAAAGGAGCAGGAGAGCTAGGAGAATCCCTGTCCTGCCAAGTGCTGCCCCTGCT-CTACAGCCTCTCAAGTC-CTAGTCTCCATCTGCAGCTTAGCACTGACAAGCACACAG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54409111 136 +  91889043 ----CCCTCCTGGCCTGGAGGTAGTCTGAAGACCT-------AGCAGGGAAGCCAGAAGACGACTCATCCTGCCAAATGCTCCCTCTGCC-CTGCCGCGTCTCACGCCCCTGTTCCCAGCTGGCAGTGCAGCACTTATGAGCACAGAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1799283 140 +   3943991 AAACTCTTTCTGGCCTGGAGGTAA-CTGGAGACCT-------AACAGGAAAGCAGGAAGAAGGCCCATCCTGCCAAGTGCCGCCTCCGTCCCTGCAGCCTCTGAAGTCCCTGTTCTCAGTCTGCGGTGCAGCACTGATGAGCACACGC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113270805 131 + 116334831 I

a score=6412451.000000
s hg38.chr15_KI270850v1_alt    337888 458 +    430880 TGCTCCTTCCTGACCAGATTCAGTGTGGGTG----TGAAGACTAAGCATTTGGGGAGGTGGGTTAGCCACAT--GTTAATCACAGAGGTCAG-----GCTCTGCTCCACCTCCATACCTCATCATTGA-------CATTTTGCCAGGA-----------CTGGCGAATTGACCTCCTTTCTC--------------------------AGAGG---AGCTGATCAAAA-CCTAGTGGTTAGGCCCACAGACT---TCTGAGTTAGGAAAGCACAGGC------CACA-CTCTGTTGCCT---GACTC-ACTCAGAAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGACAATGCCAGAG----------------------------CTTTTC--------------------------AAG--AACTTTT---AATA--------------------------------------------------------AAAAACTCCAGGCAAGT--------------------------------------TCAGAGAATTGC-AGCCTTTTCATGAAA----T-AGTACCTGTTGTCTGTTCCAAACTGGT--TTCGCTGTGAACTC-TGAGCTTCCAA-CAAAGTTCCT--ACCTCACTCTCACT--TCTTATCACC-TCC-TGTAGTCTCCAAT
s panTro5.chr15              63491278 458 +  83230942 TGCTCCTTCCTGACCAGATTCAGTGTGGGTG----TGAAGACTAAGCATTTGGGGAGGTGGGTTAGCCACAT--GTTAATCACAGAGGTCAG-----GCTCTGCTCCACCTCCATACCTCATCATTGA-------CATTTTGCCAGGA-----------CTGGCGAACTGACCTCCTTTCTC--------------------------AGAGG---AGCTGATCAAAA-CCTAGTGGTTAGGCCCACAGACT---TCTGAGTTAGGAAAGCACAGGC------CACA-CTCTGTTGCCT---GACTC-ACTCAGAAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGACAATGCCAGAG----------------------------CTTTTC--------------------------AAG--AACTTTT---AATA--------------------------------------------------------AAAAACTCCAGGCAAGT--------------------------------------TCAGAGAATTGC-AGCCTTTTCATGAAA----T-AGTACCTGTTGTCTGTTCCAAACTGGT--TTTGCTGTGAACTC-GGAGCTTCCAA-CAAAGTTCCT--ACCTCACTCTCACT--TCTTATCACC-TCC-TGTAGTCTCCAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80448412 458 +  99763055 TGCTCCTTCCTGACCAGATTCAGTGTGGGTG----TGAAGACTAAGCATTTGGGGAGGTGGGTTAGCCACAT--GTTAATCACAGAGGTCAG-----GCTCTGCTCCACCTCCATACCTCATCATTGA-------CATTTTGCCAGGA-----------CTGGCGAATTGACCTCCTTTCTC--------------------------AGAGG---AGCTGATCAAAA-CCTAGTGGTTAGGCCCACAGACT---TCTGAGTTAGGAAAGCACAGGC------CACA-CTCTGTTGCCT---GACTC-ACTCAGAAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGACAATGCCAGAG----------------------------CTTTTC--------------------------AAG--AACTTTT---AATA--------------------------------------------------------AAAAACTCCAGGCAAGT--------------------------------------TCAGAGAATTGC-AGCCTTTTCATGAAA----T-AGTACCTGTTGTCTGTTCCAAACTGGT--TTTGCTGTGAACTC-GGAGCTTCCAA-CAAAGTTCCT--ACCTCACTCTCACT--TCTTATCACC-TCC-TGTAGTCTCCAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        48569 459 -   1709092 TGCTCCTTCCTGACCAGATTCAGTGTGGGTG----TGAAGACTAAGCATTTGGGGAGGTGGGTTAGCCACAT--CTTAATCACAGAGGTCAG-----GCTCTGCTCCACCTCCATACCTCATCATTGA-------CATTTTGCCAGGA-----------CTGGCAAATTGACCTCCTTTCTC--------------------------AGAAG---AGCTGATCAAAA-CCTAGTGGTTAGGCCCACAGACT---TCTGAGTTAGGAAAGCACAGGCCA----CACA-CTCTGTTGCCT---GACTC-ACTCAGAAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGACAATGCCAGAG----------------------------CTTTTC--------------------------AAG--AACTTTT---AATA--------------------------------------------------------AAAAACTCCAGGCAAGT--------------------------------------TCAGAGAATTGC-AGCCTTTTCATGAAA----T-AGTACCTGTTGTCTGTTCC-AACTGGT--TTCGCTGTGAACTC-TGAGCTTCCAA-CAAAGTTCCT--ACCTCACTCTCACT--TCTTATCACC-TCC-TGTAGTCTCCAAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17200341 448 - 121039945 TGCTCCTTCCTGACCAGATTCAGTGTGGGTG----TGAAGACTAAGCATTTGGGGAGGTAGGTTAGCCACAT--CTTAATCACAGAGGTCAG-----GCTCTGCTCCACCTCCATACCCCATCATTGA-------CATTTTGCCAGGA-----------CTGGCAAATTGACCTCCTTTCTC--------------------------AGAGG---AGCTGATCAAAA-CCTAGTGGTTAGGCCCACAGACT---TCTGAGTTAGGAAAG-------------CACA-CTCTGTTGCCT---GACTC-ACTCAG-AAGTCCTCCTCCCGCCTGACCTGGTCTCTGACCTTAGACAATGCCAGAG----------------------------CTTTTC--------------------------AAG--AACTTTT---AATA--------------------------------------------------------AAAGAAACCAGGCAAGT--------------------------------------TCAAAGAATTGC-AGCCTTTTCATGAAA----T-AGTACCTGTTGTCTGTTC--AAATGGT--TTCGCTGTGAACTC-TGAGCTTCCAA-CAAAGTTCCT--ACCTCACTCTCACT--TCTTATCACC-TCC-TGTAGTCTCCAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60888921 456 + 169600520 TGCTCCTTCCTGACCAGATTCAGTGTGGGTG----TGAAGACTAAGCATTTGGGGAGGTGGGTTAGCCACAT--CTTAATCACAGAGTTCAG-----GCTCTGCTCTACCTCCATACCCCATCATTGA-------CATTTTGCCAGGA-----------CTAGTGAATTGACCTCCTTTCTC--------------------------AGAGG---AGCTGATCAAAA-CCTAGTGGTTAAGCCCACAGACT---TCTGAGTTAGGGAAGCACAGGC------CACA-CTCTGTTGCCT---GACTC-ACTCAGAAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGATAATGCCAGAG----------------------------CTTTTC--------------------------AAG--AACTTTT---AATA--------------------------------------------------------AAAGAAACCAGGGAAGT--------------------------------------ACAGAGAATTGC-AGCCTTTTCCTGAA---------CACCTGTTGTCTGTTCCAAACTGGT--TTGGCTGTAAACTC-TAAGCTTCCAA-CAAAGTTCCTACACCTCACTCTCACT--TCTTATCACC-TCT-TGTAGTCTCCAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108415694 456 - 171882078 TGCTCCTTCCTGACCAGATTCAGTGTGGGTG----TGAAGACTAAGCATTTGGGGAGGTGGGTTAGCCACAT--CTTAATCACAGAGTTCAG-----GCTCTGCTCTACCTCCATACCCCATCATTGA-------CATTTTGCCAGGA-----------CTAGTGAATTGACCTCCTTTCTC--------------------------AGAGG---AGCTGATCAAAA-CCTAGTGGTTAAGCCCACAGACT---TCTGAGTTAGGGAAGCACAGGC------CACA-CTCTGTTGCCT---GACTC-ACTCAGAAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGATAATGCCAGAG----------------------------CTTTTC--------------------------AAG--AACTTTT---AATA--------------------------------------------------------AAAGAAACCGGGGAAGT--------------------------------------ACAGAGAATTGC-AGCCTTTTCCTGAA---------CACCTGTTGTCTGTTCCAAACTGGT--TTGGCTGTAAACTC-TAAGCTTCCAA-CAAAGTTCCTACACCTCACTCTCACT--TCTTATCACC-TCT-TGTAGTCTCCAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        26138 456 -   2311642 TGCTCCTTCCTGACCAGATTCAGTGTGGGTG----TGAAGACTAAGCATTTGGGGAGGTGGGTTAGCCACAT--CTTAATCACAGAGTTCAG-----GCTCTGCTCTACCTCCATACCCCATCATTGA-------CATTTTGCCAGGA-----------CTAGTGAATTGACCTCCTTTCTC--------------------------AGAGG---AGCTGATCAAAA-CCTAGTGGTTAAGCCCACAGACT---TCTGAGTTAGGGAAGCACAGGC------CACA-CTCTGTTGCCT---GACTC-ACTCAGAAAGTCCTCCTCCAGTCTGACCTGGTCTCTGACCTTAGATAATGCCAGAG----------------------------CTTTTC--------------------------AAG--AACTTTT---AATA--------------------------------------------------------AAAGAAACCGGGCAAGT--------------------------------------ACAGAGAACTGC-AGCCTTTTCCTGAA---------CACCTGTTGTCTGTTCCAAACTGGT--TTGGCTGTAAACTC-TAAGCTTCCAA-CAAAGTTCCTACACCTCACTCTCACT--TCTTATCACC-TCT-TGTAGTCTCCAAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        24294 456 -   1987038 TGCTCCTTCCTGACCAGATTCAGTGTGGGTG----TGAAGACTAAGCATTTGGGAAGGTGGGTTAGCCACAT--CTTAATCACAGAGTTCAG-----GCTCTGCTCTACCTCCATACCCCATCATTGA-------CATTTTGCCAGGA-----------CTAGTGAATTGACCTCCTTTCTC--------------------------AGAGG---AGCTGATCAAAA-CCTAGTGGTTAAGTCCACAGACT---TCTGAGTTAGGGAAGCACAGGC------CACA-CTCTGTTGCCT---GACTC-ACTCAGAAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGATAATGCCAGAG----------------------------CTTTTC--------------------------AAG--AACTTTT---AATA--------------------------------------------------------AAAGAAACCGGGCAAGT--------------------------------------ACAGAGAATTGC-AGCCTTTTCATGAA---------CACCTGTTGTCTGTTCCAAACTGGT--TTGGCTGTAAACTC-TAAGCTTCCAA-CAAAGTTCCTACACCTCACTCTCACT--TCTTATCACC-TCT-TGTAGTCTCCAAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21104832 457 -  24206276 TGCTCCTTCCTGACCAGATTCAGTGTGGGTG----TGAAGACTAAGCATTTGGGGAGGTGGGTTAGCCACAT--CTTAATCACAGAGTTCAG-----GCTCTGCTCTACCTCCATACCCCATCATTGA-------CATTTTGCCAGGA-----------CTGGTGAATTGACCTCCTTTCTC--------------------------AGAGG---AGCTGATCAAAA-CCTAGTGGTTAAGCCCACAGACT---TCTGAGTTAGGGAAGCACAGGC------CACA-CTCTGTTGCCC---GACTC-ACTCAGAAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGATAATGCCAGAG----------------------------CTTTTC--------------------------AAG--AACTTTT---AATA--------------------------------------------------------AAAGAAACCGGGCAAGT--------------------------------------ACAGAGAGTTGC-AGCCTTTTCATGAA---------CACCTGTTGTCTGTTCCAAACTGGT--TTGGCTGTAAACTC-TAAGCTTCCAA-CAAAGTTCCTACACCTCACTCTCACT--TCTTATCACC-TCTATGTAGTCTCCAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        20021 456 -   1397330 TGCTCCTTCCTGACCAGATTCAGTGTGGGTG----TGAAGACTAAGCATTTGGGAAGGTGGGTTAGCCACAT--CTTAATCACAGAGTTCAG-----GCTCTGCTCTACCTCCATACCCCATCATTGA-------CATTTTGCCAGGA-----------CTAGTGAATTGACCTCCTTTCTC--------------------------AGAGG---AGCTGATCAAAA-CCTAGTGGTTAAGTCCACAGACT---TCTGAGTTAGGGAAGCACAGGC------CACA-CTCTGTTGCCT---GACTC-ACTCAGAAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGATAATGCCAGAG----------------------------CTTTTC--------------------------AAG--AACTTTT---AATA--------------------------------------------------------AAAGAAACCGGGCAAGT--------------------------------------ACAGAGAATTGC-AGCCTTTTCATGAA---------CACCTGTTGTCTGTTCCAAACTGGT--TTGGCTGTAAACTC-TAAGCTTCCAA-CAAAGTTCCTACACCTCACTCTCACT--TCTTATCACC-TCT-TGTAGTCTCCAAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        43323 458 -   1784207 TGCTCCTTCCTGACCAGATTCAGTGTGGGTG----TGAAGACTAAGCATTTGGGGAGGTGGGTTAGCCACAT--CTTAATCATAGAGTTCAG-----GCTCTGCTCCACCTCCATACCCCATCATTGA-------CATTTTGCCAGGA-----------CTGGTGAACTGACCTCCTTTCTC--------------------------AGAGG---AGCTGATCAAAA-CCTAGTGGTTAAGCTCACAGACT---TCTGAGTTAGGGAAGCACAGGCCA----CACA-CTCCGTTGCCT---GACTC-ACTCACAAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGATAATGCCAGAG----------------------------CTTTTC--------------------------AAG--AACTTTT---AATA--------------------------------------------------------AAAGAAATCGGGCAAGT--------------------------------------ACAGAGAATTGC-AGCCTTTTCATGAA---------TACCTGTTGTCTGTTCCAAACTGGT--TTGGCTGTAAACTC-TAAGCTTCCAA-CAAAGTTCCTACACCTCATTCTCACT--TCTTATCACC-TCT-TGTAGTCTCCAAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22239891 467 + 158406734 TGTTCCTTCCTGACCAGATTCAGTGTGGGTG----TGAAGACTAAGCATTTGGGGAAGTGGGTTAGCCACAT--CTTAATCACAGAGTTCAG-----GCTCTGCTCCACCTCCATACCCCATCACTGAGA----TTACTTTGTCAGGA-----------CTGGTGAACTGACCTCCTTCCTT--------------------------AGAGG---AGCTGATCAAAA-CCGAGTGGTTAGACCCACAGACT---TCTGAGTTAGGAAAGCACAGGCTATGACCACA-CTCTGTTGCGT---GACTC-ACTCAGTAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGATAATGCCAGAG----------------------------CTTTTA--------------------------AAG--AACTTTT---AATA--------------------------------------------------------AAGGAAACCAGGCAAGT--------------------------------------TCAGAGTATTGC-AGCCTTTTCATGAAA----C-AGTACCTGTCGTCTGTTCCAAACTGGT--TTGGCTGTAAACTC-TGAGCTTCCAA-CAAAGTTCCT--ACCTGGCTCTTACT--TCTTATCACC-TCC-TGTAGTCTCCAAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50475677 467 +  54856640 TGCTCCTTCCTGACCAGATTCAGTGTGGGTG----TGAAGACTAAGCATTTGGGGAAGTGGGTTAGCCACAT--CTTAATCACAGAGTTCAG-----GCTCTGCTCCACCTCCATACTCCATCACTGAGA----TTATTTTGCCAGGA-----------CTGGTGAATTAACCTCCTTTCTC--------------------------AGAGG---AGTTCATCAAAA-CCAAGAGGTTAGGCCCACAGACT---TCTGAATTGGGAAAGCACAGGCTATGACCATA-CTCTGTAGCGT---GACTC-ACTCAGAAAGTCCTCCTCCAGCCTGACCTGGTCTCTGCCCTTAGATAATGCCAGAG----------------------------CTTTTC--------------------------AAG--AACTTTT---AATA--------------------------------------------------------AAGGAAACCAGGCAAGT--------------------------------------TCAGAGAATTGC-AGCCTTTTCATGAAA----C-AGTACCTGTTGTCTGTTCCAAACTGGT--TTGGCTGTGAACTC-TGAGCTTCCAA-CAAAGTTCCT--ACCTGGCTCTTACT--TCTTATCACC-TCC-TGTAGTCTCCAAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       619287 478 -   2910086 TGCTCCTTCCTGACCAGATTCAGTGTGGGTG----TGAAGACTAAGCATTTGGGGAAGTGGGTTAGCCACAT--CTTAATCACAGAGTTCAG-----GCTCTGCTCCACTTCCATACCCTATCATTGACA----TTATTTTGCCAGGACATTATTTTGCCAGGTAAACTGACCTCCTGTCTC--------------------------AGAGG---AGCTGATCAAAA-CCGAGTGGTTAGGCCCACAGACT---TCTGAGTTAGGAAAGCACAGGCTATGACCACA-CTCTGTAGCGC---GACTC-ACTCAGAAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTTAGATAATGCCAGAG----------------------------CTTTTC--------------------------AAG--AACTTTT---AATA--------------------------------------------------------AAGGAAACCAGGCAAGT--------------------------------------TCAGAGACTTGC-AGCCTTTTCATGAAA----C-AGTACCTGTTGTCTGTTCCAAACTGGT--TTGGCTATGAACTC-TGAGTTTCCAA-CAAAGTTCCT--ACCTGGCTCTTACT--TCTTATCACC-TCC-TGTAGTCTCTAAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40647440 460 +  42888418 TGCTCCTTCCTCACCAGATTCAGTGTGGGTG----TGAAGACTAAGCATTTGGGGAAGTGGGTTAGCCACAT--CTTAAT--CAGAGTTCAG-----GCTCTGCTCCACCTCCATACCCCATCATTGAGA----TTATTTTGCCAGGA-----------TTGGTGAACTGACCTCCTTTCTC--------------------------AGAGG---AGCTGATCAAAA-CCGAGTGGTTAGGCCCACAGACT---TCTGAGTTAGGAAAGCACAGGCTATGACCACACCTCTGTTGCGT---GACTC-ACTCAGAAAGTCCTCCTCCAGCCTGACCTGGTCTCTGACCTGAGATAATGACAGAG----------------------------CTTTTC--------------------------AAG--AACTTTT-AAAATA--------------------------------------------------------AAGGAAACCAGGCAAGT--------------------------------------TCAGAGAATTGC-AGCCTTTTCATGAAA----C-AGTACCTGTTGTCTGTTCCAAACTGGT--TTGGCTGTGAACTC-TGAGCTT-CAA-CAAAGTTCCT--ACCTGGCTCTTACT--TCTTATCACC-TC--------CTCCAAT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113270936 459 + 116334831 TGCTCCTTCCTGACCAGATTCCGTGTGGGTG----GGCAGGGTAAGCATTTGGGGAGGTGGGTTAGCCACAT--CTTGATCAGAGAGTTCAG-----GCTCTGCTTCACCTCCAAACCCCACTACTGAGA----TTATTCTGCCGTGA-----------CTGGTGAATTCATCTCCTTTCCC--------------------------AGAGG---GGCTGATCAAAA-CCTAGTGGTTAGGCCCACAGACT-CCCCTGAGCTGGAAGAGCACAGGCTATGACTATA-CTCTGTTGCCT---GAGTTAACTCAGTAAGTCCTCCTTCAGCCTGACCTGGTCTCTGACCCTAGACAACGCCAGAG----------------------------CTTTTT--------------------------AAG--AACTTTA---AATA--------------------------------------------------------AAGGAAATCAGGCAAGT--------------------------------------TAAGAAGAGTGT-GACCTTTTAGTGAAA----T-ATTACCTGTTGTCTGTCCCAAACTA-T--TTAGCTGTAAACTC-TAAGATTCCAA-CAAAGTTCCT--GCCTCA------------TCGTCACC-TCC-TATAGTCTCCAAT
i micMur3.chr9              I 131 C 0
s proCoq1.NW_012142813v1        15972 463 +     80520 TGCTCCTTCCTGACCAGATTCAGTGTGGGTG----GGCAGGGTAAGCATTTGGGGAGGTGGGTTAGCCACAT--CTTGATCAGAGAGCTCAG-----GCTCTGCTCCACCTCCAAACCCCACTACTGAGA----TTATTCTGCCATGA-----------CTAGTGAATTCATCTCCTTTCCC--------------------------AGAGG---GGCTGATCACAA-CCTAGTGGTTAGGCCCACAGACT-CCCCTGAGCTAGAAGAGCACAGGCTATGACTATA-CTCTGTTGCCT---GAGTT-ACTCAGTAAGTCCTCCTTCAGCCTGACCTGGTCTCTGACCCTAGACAACGCCAGAG----------------------------CTTTTT--------------------------AAG--AACTTTT---AATA--------------------------------------------------------AAGGAAACCAGGCAAGT--------------------------------------TCAGGAGAGTGT-GACCTTTTAATGAACTATTT-ATTACCTGTTGTCTGTCCCCAACTG-T--TTAGCGGTAAACTCTTAAGATTCCAA-CAAAGTTCCT--GCCTCA------------TTGTCACC-TCC-TATAGTCTCCAAT
i proCoq1.NW_012142813v1    C 0 I 30
s otoGar3.GL873530             633425 443 -  36342412 -GGATCCTCTTGACCAGATTCAGCACAGGGG----GGCAGACTGAGCATTTGGAG-GGTGGGTTAGCTGCAT--CTGGGTCAGAGAATTCGG-----GCTCTGCTCCACCTCCAAAGCCCAGCTCTGAGA----CTACTCTGCTGTGA-----------CTGGTGAGCTGACCTCCTTCCTC--------------------------AGAAGGGTGGCTGATGAGGA-CC-------TAGGCCCACAAACT-CCCCTGAGCTAGAGCAGCACAGACAATAACTATA-CTCTGCTGCCT---GAGTT-CCTTGGTGAG---TCCTGCAGCCTGACCTGGTCTAAGACCTCA---AACACCAGAA----------------------------CTTTTC--------------------------TAG--AACTTTT---AACA--------------------------------------------------------AAGGAAATCAGGCAAGT--------------------------------------TCAGGAAAGTGC-AGCCTTTTAATGAAA----T-AATACCTGTAGTCTGTCTCAAACTGAT--CTGGCAGTGAACTC---AGAGTCCAA-CAAAGTTCTT--GCCT--------------TCCTCACC-ACC-TATAGCCTCCCAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81350984 573 + 145441459 TGCTCCTCCCTGGCCATATTCACTGTGGGTG----GGTAGACCAGGCATCTGGGAAGGT-GCTTAACTAAATGCCTTGAT--CAGAGTCCA-----------GCTCTACTTCTAAGTACAATCACAGAGA---CTCACTGCACTCGGA------------------ACTAACCTCCTTTCTC--------------------------AGAAA---GGCCGATCAAAA-CT---CGGTCAAG-ACATGGACA---T-TAAGATAGAACAGCTCAATG------GATA-TGCAATTTTTTTAGAAATT-ATCCAGAAAGC---------AACTGACCT-GTCTCTAACTCTAGACAACATCAAAGATGTAAAAATGAAAACAAATTTCCCTTCCTTTTCCTTCTTCCCACTTCCCTTCTTTCCTgaca--aggtctc---aatatgtagtcctggatgcctttgaactcagagatccacctgcctctatttcccaagtactgggactacaggcatgtgaactttgcctggGAAGAACCTTATTAAAGGAACGTTCTCAGTAAAATGT-AGTCTTTAAATGCAC---------------AGTTTGTCCAAAACTAGTACTTGGTTGTGTACTT-TGAATTTCCAA-CAAACCTCTT--TCCTCCTTTTCACCAGTACTATCACAGTCC-TACAATT------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54409247 452 +  91889043 TGCTCCTTCCTGACCAGATTCAGTGTGGGTG----GGCAGAGTAAGCACTTGGGGAGGTGGGTGAGCCAGGG--CTTGATCACAAAGTTTAGGCTCTGCTCTGCTCCACCTCCAAAC--CACCACTCAAG---ATTATTCTGCTTTGG-----------CTGAGGAATGAAGCTCCTTTCTC--------------------------AGGGG---AGTTGACCAAAAGCCCAACAGTTAAGTCCACCAACTCCCCCTACGCTAGGATGGCACAGGCCATGAGTATA-CTCTGTTGCCC---AAGTC-GCCCAGGATCTCCTTCTA----------TGGTCTCTGACCCTAGA----GATAGAG----------------------------TTCTTG--------------------------AAAGTAACCCTT---AGTA--------------------------------------------------------TAAAAAAACAGGCAAAT--------------------------------------TCAGAGAAGTCCTGGTCTTTTAATGAAA----TGATTACCTGTTCT-TGTCCCAGACTGGT--GTGGCTATGCACTC-TGAGCTTCCAACCAAAGTTCCT--GTCTCATGTTCACT--ACCTATGATC-TAC--------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1799423 484 +   3943991 TGTTTCTTTCTGACCAGATTCAGTGTGGGTGGGAAGGAAGACTAAGTATTTGGGGAGGTGGGTTAACTGCAT--CTTGACCAGAAAGCTCAG-----TCTCTGCCCCAGCTCTAAACACTACCACTGAGATTATAAACGTCCCCTCGA-----------CTGGGGAAATG-CCTCCTTTTCCAAGTCTGCACAGGGGTCCAATCAGGAAGACA---AGTGGATCAAAA-TCCAGTGG-TAAGCTCACGGACT-CCTCAAAGCTGGGACAGCCTGGGTCATGACTATA---TTGTTGCTT---GAGCC-ACCCAG-----CGCCCTCTGGCCTGACCTGGTCTCTAACACTAGACAA------GG----------------------------CTTTAC--------------------------AAA--AACTTTTTAAAATA--------------------------------------------------------TAGAAAGCCAAGCAAGT--------------------------------------TCAAGAAAGTCCTGGCTTTTTAATGAA-----T---TACCTGTTATCTGTCCCAAACTGAT------CTGTCAACTC-AAAGTTTCCAATCAAAGCTCCT-TACCTTATTCTCATC-----TATTGCT-TCG-AATAATCTCCTAT
i dasNov3.JH570731          C 0 C 0

a score=273745.000000
s hg38.chr15_KI270850v1_alt    338346 30 +    430880 ---------------AGCTTTTTCTCCCACTGCGTGG---GAGATGGT
s panTro5.chr15              63491736 30 +  83230942 ---------------TGCTTTTTCTCCCACTGCGTGG---GAGATGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80448870 30 +  99763055 ---------------TGCTTTTTCTCCCACTGCGTGG---GAGATGGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        49028 30 -   1709092 ---------------TGCTTTTTCTCCCACTGCGTGG---GAGATGGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17200789 30 - 121039945 ---------------TGCTTTTTCTCCCACTGCGTGG---GAGATGGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60889377 33 + 169600520 ---------------TGCTTTTTCTCCCACTGCATGGTCTGAGATGGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108416150 33 - 171882078 ---------------TGCTTTTTCTCCCACTGCATGGTCTGAGATGGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        26594 33 -   2311642 ---------------TGCTTTTTCTCCCACTGCATGGTCTGAGATGGT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        24750 33 -   1987038 ---------------TGCTTTTTCTCCCACTGCATGGTCTGAGATGGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21105289 30 -  24206276 ---------------TGCTTTTTCTCCCACTGCATGG---GAGATGGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        20477 33 -   1397330 ---------------TGCTTTTTCTCCCACTGCATGGTCTGAGATGGT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        43781 30 -   1784207 ---------------TGCTTTTTCTCCCACTGCATGG---GAGATGGT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22240358 29 + 158406734 ---------------CGCTTTTTCTCTCCCTGCATGG---GAGAT-GG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50476144 30 +  54856640 ---------------CGCTTTTTCTCTCCCTGCATGG---GAGATGGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       619765 30 -   2910086 ---------------CGCTTTTTCTCTCCCTGCATGG---GAGATGGG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40647900 30 +  42888418 ---------------CACTTTTTCTCTCCCTGCATGG---GAGATGGG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113271395 29 + 116334831 ---------------CACTTTTTTCCCATCTGCACGG---GAGATGG-
i micMur3.chr9              C 0 C 0
s otoGar3.GL873530             633868 22 -  36342412 -------------------CATGTCC---CCGCACTG---GAGGTGG-
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81351557 27 + 145441459 ----------------AACCTTTTCCCCAATGTAT-----GAAATAGC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54409699 28 +  91889043 -----------------CACTTTCTCCCCCTTTGTGG---GATGTGGT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1799907 45 +   3943991 CACtttttaattttatttttcttttttttttGCATGG---AAGTTAAG
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        16435 30 +     80520 I

a score=7786585.000000
s hg38.chr15_KI270850v1_alt    338376 438 +    430880 GGGTAGAGGGCTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATATTATGGTGCTG---GTATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCC--TCACTCCCAT-G------------------GGGAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCCA----ACCAAG-CTTTCGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCGGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCGACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCAGGGGATCACCTGCACCTG-AAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCC---ACAGAGAGAG-
s panTro5.chr15              63491766 438 +  83230942 GGGTAGAGGGCTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATAGTATGGTGCTG---GTATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCC--TCACTCCCAT-G------------------GGGAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCCA----ACCAAG-CTTTCGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCGGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCGACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCAGGGGATCACCTGCACCTG-AAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCC---ACAGAGAGAG-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80448900 438 +  99763055 GGGTAGAGGGCTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATAGTATGGTGCTG---GTATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCC--TCACTCCCAT-G------------------GGGAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCCA----ACCAAG-CTTTCGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCGGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCGACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCAGGGGATCACCTGCACCTG-AAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCC---ACAGAGAGAG-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        49058 438 -   1709092 GGGTAGAGGGCTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATATTATGGTGCTG---GTATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCC--TCACTCCCAT-G------------------GGGAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCCA----ACCAAG-CTTTCGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCGGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCGACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCAGGGGATCACCTGCACCTG-AAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCC---ACAGAGAGAG-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17200819 438 - 121039945 GGGTAGAGGGCTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATATTATGGTGCTG---GTATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCC--TCACTCCCAT-G------------------GGGAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCCA----ACCAAG-CTTTCACACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCGGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCGACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCATGGGATCACCTGCACCTG-AAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCC---ACAGAGACAG-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60889410 456 + 169600520 GGGTAGAGGGGTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATATTAAGGTGCTG---GTATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCC--TCACTCCCAT-GGGGAAGTATCACAATCTTGGGAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCCA----ACCAAG-CTTTAGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCAGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCAACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCAGGGGATCACCTGCACCTG-AAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCC---ACAGAGAGAG-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108416183 438 - 171882078 GGGTAGAGGGGTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATATTAAGGTGCTG---GTATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCC--TCACTCCCAT-G------------------GGGAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCCA----ACCAAG-CTTTAGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCAGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCAACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCAGGGGATCACCTGCACCTG-AAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCC---ACAGAGAGAG-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        26627 436 -   2311642 GGGTAGAGGGGTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATATTAAGGTGCTG---G--TATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCC--TCACTCCCAT-G------------------GGGAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCCA----ACCAAG-CTTTAGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCAGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCAACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCAGGGGATCACCTGCACCTG-AAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCC---ACAGAGAGAG-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        24783 438 -   1987038 GGGTAGAGGGGTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATATTAAGGTGCTG---GTATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCC--TCACTCCCAT-G------------------GGGAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCCA----ACCAAG-CTTTAGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCAGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCAACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCAGGGGATCACCTGCACCTG-AAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCC---ACAGAGAGAG-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21105319 438 -  24206276 GGGTAGAGGGCTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATATTATGGTGCTG---GTATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCC--TCACTCCCAT-G------------------GGGAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCCA----ACCAAG-CTTTAGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCAGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCGACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCAGGGGATCACCTGCACCTG-AAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCC---ACAGAGAGAG-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        20510 438 -   1397330 GGGTAGAGGGGTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATATTAAGGTGCTG---GTATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCC--TCACTCCCAT-G------------------GGGAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCCA----ACCAAG-CTTTAGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCAGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCAACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCAGGGGATCACCTGCACCTG-AAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCC---ACAGAGAGAG-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        43811 438 -   1784207 GGGTAGAGGGCTAGATACAGAAGGGCCAGTACTCGTGACTTGTCTAGAAAAAGATATTATGGTGCTG---GTATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCC--TCACTCCCAT-G------------------GGGAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCCA----ACCAAG-CTTTAGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCGGCATACACCACTCCACCAAATAGGTCGTTCAAGACGGCTGCCAGGGCCTCAGCATTTAGCATTCCATGCAGAGCACCGACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCGGCTAATACCCAGGGGATCACCTGCACCTG-AAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAGCC---ACAGAGAGAG-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22240387 433 + 158406734 GGGTAGAGGGCTAGATGCAGAGGGGCCAGTACTCGTGACCTGACT---AGAAGATATT--GCTGCTG---GTATGTGCTGATCTGCAGAGCCGGGTCAGGCCTCTCTCC--CCACTCCCAT-A------------------GGGAATTATCACAATCTTGGTCTA-----CTCCCAGGAGCCA----ACCAAG-CTTTCGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCGGCATACACCACTTCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCGGCATTGAGCATCCCATGCAGAGCACCAACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCTGCTAATACCCAGGGGATCACCTGCACCTG-AAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAACC---ACAGATAGAG-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50476174 436 +  54856640 GGGTAGAGGGATAGATGCAGAGGGGCCAGTACACGTGACCTGACTAGAAGAAGATACT--GCTGCTG---GTATGTGCTGATCTGCAGAGCCGGGTCAGGCGTCTCTCC--CCACTCCCAC-T------------------GGGAATTATAACAATCTTGGTCTA-----CTCCCAGGGGCCA----ACCAAG-CTTTCGTAGACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCGGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCGGCATTGAGCATCCCATGCAGAGCACCAACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGACGGGCTCCGGACAAAGTTACTGTCTGCTAATACCCAGGGGATCACCTGCACCTG-AAAACCACCCAAAGGTATATCAGCCCGGGCAGAGAACC---ACAGATACAG-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       619795 436 -   2910086 GGGTAGAGGGCTAGATGCAGAGGGGCCAGTACACGTGACCTGACTAGAAGAAGATGCT--GCTGCTG---GTATTTGCTGATCTGCAGAGCCGGGTCAGGCCTCTCTCC--CCACTCCCAT-G------------------GGGAATTATAACAATCCTGGTCTA-----CTCCCAGGGGCCA----ACCAAG-CTTTCGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCGGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCGGCATTCAGCATCCCATGCAGAGCACCAACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCTGCTAATACCCAGGGGATCACCTGCACCTG-AAAACCACCCAAAGGTGTATCAGCCCTGGCAGAGAACC---ACAGATAGAG-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40647930 436 +  42888418 AGGTAGAGGGCTCGATGCAGAGGGGCCAGTACTAGTGACCTGACT---AGAAGATATT--GCTGCTG---GTATGTGCTTATCTGCAGAGCCGGGTCAGGCCTCTCTCC--CCACTCCCAT-G------------------GGGAATTATCACAATCTTGGTCTA-----CTCCCAGGGGCCA----ACCAAG-CTTTCGCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCAGCATACACCACTCCACCAAATAGGTCGTTCAAGATGGCTGCCAGGGCCTCGGCATTTAGCATCCCATGCAGAGCACCAACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTACTGTCTGCTAATACCCAGGGGATGACCTGCACCTG-AAAACCACCCAAAGGCGTATCAGCCCTGGCAGAGAACCACAACAGATAGAG-
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113271424 437 + 116334831 AGGTAGAAGACTGGGTGCAGGGGGCCCAGTGCTGGTGATATGTCTAGAAAAAGATGCTCTGCTGCTG---GTATATGCTGATCTGCAGACGTGGGTCA-GCCTCTTTCTCCCCATTCCCGCAG------------------GAAAAGTATCACAATCTTAGT--------CTCCCAAGGGCC-----ACCAAG-CTTTCCCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCAGCATACACCACGCCCCCAAATAGGTCATTCAAGATGGCTGCCAGGGCCTCGGCGTTGAGCATCCCATGCAGAGCACCCACGAACACCGTCCTGCTGGGGTCAAGCCTCTGAGACGGGCTCCGGACAAAGTTGCTGTCAGCCAAGACCCAGGGGATCACCTGCACCTGAAAAACCACCCAAAGGTATATCAGCCCTGGCAAAAAGCC---TGAGAGAGAG-
i micMur3.chr9              C 0 I 198
s proCoq1.NW_012142813v1        16465 440 +     80520 AAGTAGAAGACTGAGTGTAGGGGGCCCAGTGCTGGTGATATGTCTAGAAAGAGATGCTATGCTGCTG---GTATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCTCTCCATTCCCGT-G------------------GGAAAGTATCACAATCTTGGTCTA-----CTCCCAGGGGCC-----ACCAAG-CTTTCCCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCAGCATACACCACGCCCCCAAATAGGTCATTCAAGATGGCTGCCAGGGCCTCGGCGTTGAGCATCCCATGCAGAGCACCAACAAACACCGTCCTGCTGGGGTCAAGCCTCTGAGATGGGCTCCGGACAAAGTTGCTGTCAGCCAAGACCCAGGGGATCACCTGCACCTGAAAAACCACCCAAAGGTATATCAGCCCTGGCAAAAAGCC---TCAGAGAGAG-
i proCoq1.NW_012142813v1    I 30 I 126
s otoGar3.GL873530             633890 432 -  36342412 AGGCAGTGGATCTGGTGCAGA-----CAATGCTGGTGGTGCTTCTAGAAAT-GATTCTGTACTTCTGTCTGTGC-TGCTGACCTGCACACCTGGGTTACGCCTCTCTCTC-CCACTCCCGT-A------------------GGGAAGTATTACAATCCTGGAATA-----CTCCCAGGGGTC-----ACC-AG-CTTTCCCATACAAAAGCGGGATGCTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCCGCATATACCACGCCTCCGAAGAGGTCATTCAAGATGGCTGCCAGGGCCTCGGCGTTGAGCATGCCATGCAGGGCGCCAACAAACACCGTCCTGCTGGGGTCTAGCCTCTGAGATGGGCTCCGGACAAAGTTGCTGTCAGCCAAGACCCAGGGGATCACCTGCACCTG-AAAACCACCCAAAGGTAGATTAGCCCT-GCAGAGTGCC---CCAGACAGAG-
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81351584 402 + 145441459 -AGCAGAAG-CAAGATGCAGACAGGCCAGCACCGTTAGCTT--CTGGA----------------------GGAAATGATGATCTGCAGACCTGGGTCAGGTCTCT------ACACTCCCAA-G------------------GGTAAGTATTACCATCTTAATCTA-----CTCCCAGGGGC------ACCAAG-CCTTCCCACAAAGAAGTAGGACACTCACCAATGGGGTACTTGTGCTTATCTGTGTCAATCCCAGCATACACCACTCCACCAAATAGGTCATTCAAGATGGCAGCCAGAGCCTCAGCATTGAGCATCCCGTGCAAGGCACCAACAAACACCGTCCTGCTGGGATCCAGCCTCTGAGATGGGCTCCAGACAAAGTTGCTGTCAGCCAAGACCCAAGGGATTACCTGTACCTG-AAAACC-CCCAAAGGTTTATCAG--CTGGCAT----CT---TCAGAGAGAC-
i mm10.chr7                 C 0 I 2
s canFam3.chr3               54409727 433 +  91889043 -AGGAGAGAGGTGGGTGCA--AGGGGCAGTACCAATGGCTTATCTACAAAAAGATGGTATGCTGCTG---ATAGATGCTGATCTGTGGACCTGGGTCAGGCCTCCCTCT--CCACTCCCGT--------------------GGGAAGTATTACAATCTCAGTCTAGCAAGGTCCCAGGGGCC-----ACCAAA-TTTTCCCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCGGCATACACCACTCCACCAAATAGGTCATTCAAGATGGCTGCAAGGGCCTCAGCATTGAGCATCCCATGCAGAGCACCGACAAACACCGTCCTGCTGGAGTCAAGTCTCTGAGATGGGTTCCGGATAAAGTTGCTGTCAGCCAAGACCCAGGGAATCACCTGCACCTG-GAAACCACCCAAAGGTGCGTGAG-CCTAGCAGGGAGCC---AGAGAG-----
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1799952 424 +   3943991 ----------------GGAAGAGAGCCATTTTTGATGACTTGATT-----AAGAAGCTAGGCTGCTG---ATATATGCTGATCTGCAGACCTGGGTCAGGCCTCTCTCT--CCATTCCCAT-G------------------GGGAAGTATTGCAATCCAGTCTTT-----ATCCCAGGGGTCACCACACCAAGACTTTTTCACACAGAAGTGGGACACTTACCAATGGGATACTTGTGCTTATCTGTGTCAATCCCAGCATACACCACTCCACCAAATAGGTCATTCAATATAGCTGCCAGGGCCTCGGCATTAAGCATGCCATGCAGAGCACCAACAAACACAGTCCTGCTGGGGTCAAGTCTCTGAGATGGGCTCCGGACAAAGTTGCTGTCAGCCAACACCCAGGGAATCACCTGCACCTGAAAAACCACCCATGGGTGCATCAGCTTTTGCAGAAATCC---ATAGAGGAAAA
i dasNov3.JH570731          C 0 C 0

a score=1464799.000000
s hg38.chr15_KI270850v1_alt    338814 127 +    430880 AGGTGCTTGCACGGCAAGGTACGTGCTCTGGAGATACTGAAGCTAA-----GCTAACGCCCTTACAGGGGTGAAAAGGTGCTGTTGCCCAATCTCAGGCACACAGGC-----GTCCAATAAACCACCCTGACTCCAC
s panTro5.chr15              63492204 127 +  83230942 AGGTGCTTGCATGGCAAGGTACATGCTCTGGAGATACTGAAGCTGA-----GCTAAGGCCCTTACAGGGGTGAAAAGGTGCCGTTGCCCAATCTCAGGCACACAGGC-----GTCCAATAAACCACCCTGACTCCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80449338 127 +  99763055 AGGTGCTTGCATGGCAAGGTACATGCTCTGGAGATACTGAAGCTGA-----GCTAAGGCCCTTACAGGGGTGAAAAGGTGCCGTTGCCCAATCTCAGGCACACAGGC-----GTCCAATAAACCACCCTGACTCCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        49496 127 -   1709092 AGGTGCTTGCATGGCAAGGTACGTGCTCTGGAGATACTGAAGCTGA-----GCTAAGGCCCTTACAGGGGTGAAAAGGTGCTGTTGCCCAATCTCAGGCACGCAGGC-----GTCCAATAAACCACCCTGACTCCAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17201257 127 - 121039945 AGGTGCTTGCATGGCAAGGTACGTGCTCTGGAGATACTGAAGCTGA-----GCTAAGGCCCTTACAGGGGTGAAAAGGTGTTGTTGCCCAATCTTAGGCATGCAGGC-----GTCCAATAAACCACCCTGACTCCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60889866 130 + 169600520 AGGCGCTTGCATGGCAAGGCACATGCTCTGGAGATACTGAAGCTGG-G-CTGCTAAGGCCCTTACAGGGGTGAAAAGGTGTTGTTGCCCAGTCTCAGGCACACAGGC-----ATCCAATAAACCACCCTTACTCCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108416621 130 - 171882078 AGGCGCTTGCATGGCAAGGCACATGCTCTGGAGATACTGAAGCTGG-G-CTGCTAAGGCCCTTACAGGGGTGAAAAGGTGTTGTTGCCCAGTCTCAGGCACACAGGC-----ATCCAATAAACCACCCTTACTCCAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        27063 130 -   2311642 AGGCGCTTGCATGGCAAGGCACATGCTCTGGAGATACTGAAGCTGG-G-CTGCTAAGGCCCTTACAGGGGTGAAAAGGTGTTGTTGCCCAGTCTCAGGCACACAGGC-----ATCCAATAAACCACCCTTACTCCAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        25221 130 -   1987038 AGGCGCTTGCATGGCAAGGCACATGCTCTGGAGATACTGAAGCTGG-G-CTGCTAAGGCCCTTACAGGGGTGAAAAGGTGTTGTTGCCCAGTCTCAGGCACACAGGC-----ATCCAATAAACCACCCTTACTCCAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21105757 130 -  24206276 AGGCGCTTGCATGGCAAGGCACATGCTCTGGAGATACTGAAGCTGG-G-CTGCTAAGGCCCTTACAGGGGTGAAAAGGTGTTGTTGCCCAGTCTCAGGCACACAGGC-----ATCCAATAAACCACCCTTACTCCAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        20948 130 -   1397330 AGGCGCTTGCATGGCAAGGCACATGCTCTGGAGATACTGAAGCTGG-G-CTGCTAAGGCCCTTACAGGGGTGAAAAGGTGTTGTTGCCCAGTCTCAGGCACACAGGC-----ATCCAATAAACCACCCTTACTCCAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        44249 130 -   1784207 AGGCGCTTGCATGGCAAGGCACATGCTCTGGAGATACTGAAGCTGG-G-CTGCTAAGGCCCTTACAGGGGTGAAAAGGTGTTGTTGCCCAGTCTCAGGCACACAGGC-----ATCCAATAAACCACCCTTATGCCAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22240820 129 + 158406734 TGGTGCTTGCAAGGCAAGGCGCATGCTCTGGAGATACTGAAGCTGG---CTGCTAAGGCCCTTTCAGGGGTGAAAAGGCGTTGTTGCCCAGTCTCAGGCACACAGCC-----ATCCAGTAAACCACCCTTACTCCAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50476610 134 +  54856640 AGGCGCTTGTATGGCAAGGCGCATGCTCTGGAGATACTGAAGCTGG---CTGCTAAGGCCCTTTCAGGGGTAAAAAGGCATTGTTGCCCAGTCTCAGGCACACAGCCATCCAATCCAGTAAACCACCCTTACTCCAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       620231 134 -   2910086 AGGTGCTTGCATGGCAAAGTGCATGCTCTGGAGATACTGAAGCTGG---CTGCTAAGGCCCTTTCAGGGGCGAAAAGGCGTTGTTGCCCAGTCTCGGGCACACAGCCATCCAATCCAGTAAACCACCCTTACTCCAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40648366 129 +  42888418 AGGTGCTTGCATGGCAAGGCGCATGCTCTGGAGACACTGAAGCTGG---CTGCTAAGGCCCTTTCAGGGGTGAAAAGGCGTTGTTGCTCAGTCTCAGGCACACAGCC-----ATCCAGTAAACCACCCTTACTCCAC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             634322 123 -  36342412 --GCTCCTGT-CAGCAAGGCACATACTCTGGAGCTACTCAAGCTGGGG-CTGCTAAGGCCCATCCAGGT-----AAAGTGTTACTGACCTGTCTCAGGCTCCTAGGC-----AACCTGTAAAACACCTTTACTCCAA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81351988 102 + 145441459 AGCTTCCTGTGCAGTGGGGTACATGCTTTGGA--CACTGCAGCTGCAG-CTGCTGTGA-CTGCACAAGGCTGGAAGGGCA--GTCACCCA-TCTGAGGCACACAGGC-----TT-----------------------
i mm10.chr7                 I 2 C 0
s canFam3.chr3               54410160 119 +  91889043 AGGTTCTCATACCGTGAGGTGCATGCTTGGGAGGTCCTCAAACCGG-GCCTACCAGGCCCATCCTGTGGGGGAACAGGTG-TGCTGCCCAGTCCCAGGCAGACACTC-----AGCTACCACCTCAC-----------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1800376 114 +   3943991 AGGACCTTAAATGGCAAGGCACATGCTCTGGAGATACTAAAGGTCC-----------------ACACAGTAGATGAGGTGTTACCAGCCAGTCTCAGGTACACAGGC-----ATTCAGTAAGTT-CTCATACCCCAT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113271861 198 + 116334831 I
e proCoq1.NW_012142813v1        16905 126 +     80520 I

a score=1020561.000000
s hg38.chr15_KI270850v1_alt    338941 74 +    430880 CCCAACTGGAGTTGAATTTT--ACT--GAGTCCATGTGTC-CAGAATGGTA-----GAAGTG--G--ACACA---GTACTCACTCATGCTG
s panTro5.chr15              63492331 74 +  83230942 CCCAACTGGAGTTGAATTTT--ACT--GAGTCCATGTGTC-CAGAATGGTA-----GAAGTG--G--ACACA---GTACTCACTCATGCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80449465 74 +  99763055 CCCAACTGGAGTTGAATTTT--ACT--GAGTCCATGTGTC-CAGAATGGTA-----GAAGTG--G--ACACA---GTACTCACTCATGCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        49623 74 -   1709092 CCCAATTGGAGCTGAATTTT--ACT--GAGTCCATGTGTC-CAGAATGGTA-----GAAGTG--G--ACACA---GTACTCACTCATGCTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17201384 74 - 121039945 CCCAACTGGAGTTGAATTTT--ACT--GAGTCCATGTGTC-CAGAATGGTA-----GAAGTG--G--ACACA---GTACTCACTCATGCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60889996 74 + 169600520 CCCAACTGGAGTTGAATTTT--ACT--GAGTCCATGTGTC-CAGAATGGTA-----CAAGTG--G--ACAGA---TTACTCACTCATGCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108416751 74 - 171882078 CCCAACTGGAGTTGAATTTT--ACT--GAGTCCATGTGTC-CAGAATGGTA-----CAAGTG--G--ACAGA---TTACTCACTCATGCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        27193 74 -   2311642 CCCAACTGGAGTTGAATTTT--ACT--GAGTCCATGTGTC-CAGAATGGTA-----CAAGTG--G--ACAGA---GTACTCACTCATGCTG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        25351 74 -   1987038 CCCAACTGGAGTTGAATTTT--ACT--GAGTCCATGTGTC-CAGAATGGTA-----CAAGTG--G--ACAGA---GTACTCACTCATGCTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21105887 74 -  24206276 CCCACCTGGAGTTGAATTTT--ACT--GAGTCCATGTGTC-CAGAATGGTA-----CAAGCG--G--ACAGA---GTACTCACTCATGCTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        21078 74 -   1397330 CCCAACTGGAGTTGAATTTT--ACT--GAGTCCATGTGTC-CAGAATGGTA-----CAAGTG--G--ACAGA---GTACTCACTCATGCTG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        44379 74 -   1784207 CCCAACTGGAGTTGAATTTT--ACT--GAGTCCATGTGTC-CAGAATGGTA-----CAAGTG--G--ACACA---GTACTCACTCATGCTG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22240949 74 + 158406734 CCCAACTGGAGTTGAATTTT--ACT--GAGTCCATGTGTC-CAGAATGGTA-----GAAGTG--G--ACACA---GTACTCACTCATGCTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50476744 76 +  54856640 CCTAACTGGAGTTGAATTTTACACT--GAGTCCATGTGTC-CAGAATGGTA-----GAAGTG--G--ACACA---GTACTCACTCATGCTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       620365 74 -   2910086 CCCAACTGGAGTTGAATTTT--ACT--GAGTCCGTGTGTC-CAGAATGGTA-----GAAGTG--G--ACACA---GTACTTACTCATGCTG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40648495 74 +  42888418 CCCAACTGGAGTTGAATTTT--ACT--GAGTCCATGTGTC-CAGAATGGTA-----GAAGTG--G--ACACA---GTACTCACTCATGCTG
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        17031 75 +     80520 CCCAACTAGAGTTGACTTTT--ACT--GAGTCCATGCGTA-AGGAATGGTG-----GAAGTA-AA--AAATA---ACACTCACTCATTCAG
i proCoq1.NW_012142813v1    I 126 C 0
s otoGar3.GL873530             634445 77 -  36342412 CCCAACTAGAGCTGAGTTTT--ACT--GAGTCCATCCATCTGGGAATGGTG-----GAAGTATTA--AAATA---GCACTCACTCATCCTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81352090 66 + 145441459 --TAACGTAAGTTGAATTGC--CTT-----------TGTT-CATAATGATC-----AAAGCA--A--ATACAACTGCACTTGCTCATTCTG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54410279 77 +  91889043 CCCAACCTAAGCTGGGTTTT--ACT--GGGTCTGTGTGTC-CAAAATGGGGAAAACCAAGTG--G--A-ACA---GCAGCCACCCATCTT-
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1800490 83 +   3943991 CCCAGTGATAGCTAAATTTT-TACCAGAAGTCTGTGTGTC-CAGAATGGTGAAAG-GAAGTG--GTAGAAGA---GCACTCACTCACCCTG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113271861 198 + 116334831 I

a score=1136233.000000
s hg38.chr15_KI270850v1_alt    339015 85 +    430880 GAGAGTAAGCAAAAAAGTACCACATGGCCAAACCCAGGAGCCCAGCATTCTATTTCAACCTC---CAACTGTGTAGTTCCAACAAAGG
s panTro5.chr15              63492405 85 +  83230942 GAAAGTAAGCAAAAAAGTACCACATGGCCAAACCCAGGAGCCCAGCATTCTATTTCAACCTC---CAACTGTGTAGTTCCAACAAAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80449539 85 +  99763055 GAAAGTAAGCAAAAAAGTACCACATGGCCAAACCCAGGAGCCCAGCATTCTATTTCAACCTC---CAACTGTGTAGTTCCAACAAAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        49697 85 -   1709092 GAGAGTAAGCAAAAAAGTACCACATGGCCAAACCCAGGAGCCCAGCATTCTATTTCAACCTC---CAACTGTGTAGTTCCAACAAAGG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17201458 85 - 121039945 GAGAGTAAGCAAAGAAGTACCACATGACCAAACCCAGGAGCCCAGCACTGTATTTCAACCTC---CAACTGTGTAGTTCCAACAAAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60890070 85 + 169600520 GAGAGTAAGCAAAAAAGTACCACATGACCAAACCCAGGAGCCCAGCATTCTATTTCAACTTC---CAACTGTGAGGTTCCAACAAAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108416825 85 - 171882078 GAGAGTAAGCAAAAAAGTACCACATGACCAAACCCAGGAGCCCAGCATTCTATTTCAACTTC---CAACTGTGAGGTTCCAACAAAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        27267 85 -   2311642 GAGAGTAAGCAAAAAAGTACCACATGACCAAACCCAGGAGCCCAGCATTCTATTTCAACTTC---CAACTGTGAGGTTCCAACAAAGG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        25425 85 -   1987038 GAGAGTAAGCAAAAAAGTACCACATGACCAAACCCAGGAGCCCAGCATTCTATTTCAACTTC---CAACTGTGAGGTTCCAACAAAGG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21105961 85 -  24206276 GAGAGTAAGCAAAAAAGTACCACATGACCAAACCCAGGAGCCCAGCATTCTATTTCAACTTC---CAACTGTGAGGTTCCAACAAAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        21152 85 -   1397330 GAGAGTAAGCAAAAAAGTACCACATGACCAAACCCAGGAGCCCAGCATTCTATTTCAACTTC---CAACTGTGAGGTTCCAACAAAGG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        44453 85 -   1784207 GAGAGTAAGCAAAAAAGTACCACATGACCAAACCCAGGAGCCCAGCATTCTATTTCAACTTC---CAACTGTGAGGTTCCAACAAAGG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22241023 76 + 158406734 GAGAGTAAGCAAAAATGTACCA------------AAAGAGCCCAGCATTCTATTTCAACCTCCAACAACTGTGTGGTTCCAACAAAGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50476820 73 +  54856640 GAGAGTAAGCAAAAATGTACCA------------CAAGAGCCCAGCATTCTATTTCAACCTC---CAACTGTGTGGTTCCACCAAAGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       620439 73 -   2910086 GAGAGTAAGCAAAAATGTACCA------------AAAGAGCCCAGCATTCTATTTCAACCTC---CAACTGTGTGATTCCAACAAAGG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40648569 69 +  42888418 GAGAGTAAGCAAAAATGTACCA------------AAAGAGCCCAGCATTCTATTTCAACCTC---TAACTGTGTGGTTCCAACA----
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113272059 85 + 116334831 GAGAGTAAGCAAAAAAGTACCAAACTGTCATGCCCAGGAGTCCAGCACTCCATCACCACCTC---TAATTCTGTGGTTCCAACAAAGG
i micMur3.chr9              I 198 C 0
s proCoq1.NW_012142813v1        17106 85 +     80520 GAGAGTAAGCAAAAAAGTACCAAATTGTCATGCCCAGGAGTTCAGCACTCTGTCACCACCTC---TAATTGTGTGGTTCCAACAAAGG
i proCoq1.NW_012142813v1    C 0 I 378
s otoGar3.GL873530             634522 82 -  36342412 AAGAATAGGTAAAAAAGTACC-CACTGTCATGCCCAGGAGTCCATCACTCTTTCAC--ACTC---TAACTGTGGGGTTCTAACAAAGG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81352156 57 + 145441459 CAGAGTAATCAAGAAGG-GCCA---------ACTGACAGGCCCAGGATCCTAT---AACTTC------------------AACCAAGG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54410356 84 +  91889043 CAGAGCAAGCAAAACAGT-CCGAGCTGTCACACCCAGGAACCTAGCACTCTGCCACAACCAT---CAACTATATGGTTCCAGTAGAGG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1800573 74 +   3943991 TAGAGTAAGCAAAGAAGTTCCAA-----------CTGAAATCTAGCACTGTATCACAACCTC---TAAGTGTGCAGTTCCAACGAAGG
i dasNov3.JH570731          C 0 C 0

a score=35511.000000
s hg38.chr15_KI270850v1_alt    339100 2 +    430880 GC
s panTro5.chr15              63492490 2 +  83230942 GC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80449624 2 +  99763055 GC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        49782 2 -   1709092 GC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17201543 2 - 121039945 GC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60890155 2 + 169600520 GC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108416910 2 - 171882078 GC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        27352 2 -   2311642 GC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        25510 2 -   1987038 GC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21106046 2 -  24206276 GC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        21237 2 -   1397330 GC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        44538 2 -   1784207 GC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22241099 2 + 158406734 GC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50476893 2 +  54856640 GC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       620512 2 -   2910086 GC
i cebCap1.NW_016107610v1    C 0 C 0
s micMur3.chr9              113272144 2 + 116334831 GC
i micMur3.chr9              C 0 I 264
s otoGar3.GL873530             634604 2 -  36342412 GC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81352213 2 + 145441459 GC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54410440 2 +  91889043 AC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1800647 2 +   3943991 GC
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        17191 378 +     80520 I
e aotNan1.NW_018505940v1     40648638 0 +  42888418 C

a score=559808.000000
s hg38.chr15_KI270850v1_alt    339102 51 +    430880 TGTGGACACTGATGAA--AAGGGCATAATCTGAAGTCCTCA-AGAAAGGAAGGA
s panTro5.chr15              63492492 51 +  83230942 TGTGGACACTGATGAA--AAGAGCATAATCTGAAGTCCTCA-AGAAAGGAAGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80449626 51 +  99763055 TGTGGACACTGATGAA--AAGAGCATAATCTGAAGTCCTCA-AGAAAGGAAGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        49784 51 -   1709092 TGTGGACACTGATGAA--AAGAGCATAATCTGAAGTCCTCA-AGAAAGGAAGGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17201545 51 - 121039945 TGTGGACACTGATGAA--AAGAGCATAATCTGAAGTCCTCA-AGAAAGGAAGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60890157 51 + 169600520 CGTGGACACTGATGAA--AAGAGCATAATCTGAGGTCCTCA-AGAAAGGAAGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108416912 51 - 171882078 CGTGGACACTGATGAA--AAGAGCATAATCTGAGGTCCTCA-AGAAAGGAAGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        27354 51 -   2311642 CGTGGACACTGATGAA--AAGAGCATAATCTGAGGTCCTCA-AGAAAGGAAGGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        25512 51 -   1987038 CGTGGACACTGATGAA--AAGAGCATAATCGGAGGTCCTCA-AGAAAGGAAGGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21106048 51 -  24206276 CGTGGACACTGATGAA--AAGAGCATAATCTGAGGTCCTCA-AGAAAGGAAGGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        21239 51 -   1397330 CGTGGACACTGATGAA--AAGAGCATAATCTGAGGTCCTCA-AGAAAGGAAGGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        44540 51 -   1784207 TGTGGACACTGATGAA--AAGAGCATAATCTGAAGTCCTCA-AGAAAGGAAGGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22241101 51 + 158406734 TGTGGACACTGATGAA--AAGAACAGAATCTGAAGTCCTCA-AGAAAGGAAGGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50476895 51 +  54856640 TGTGGACACTGATAAA--AAGAGCAGAATCTGAAGTCCTCA-AGAAAGGAAGGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       620514 51 -   2910086 TGTGGACACTGATGAA--AAGAGCAGAATCTGAAGTCCTCA-AGAAAGGAAGGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40648638 17 +  42888418 ----GACACTGGTGAA--AAGGG-------------------------------
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             634606 49 -  36342412 CATGGACACTTATCAA--CAG--CATGATCTGGAGTCCACA-AGAAAGGAAGGA
i otoGar3.GL873530          C 0 I 188
s mm10.chr7                  81352215 42 + 145441459 ----CACAGGAACTAA--CAGAGCACAA------GTTCTCACAAAAAGGAAACA
i mm10.chr7                 C 0 I 21
s canFam3.chr3               54410442 42 +  91889043 ----CACAGAGCCATG--GAAAGCATGAT-----GTCCTTA-GGGCAGGAAGGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1800649 52 +   3943991 CATGGACACTGGTGAATGGAGAATATGATCTGGAGTATTCA-GGAAAGGAGGA-
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113272146 264 + 116334831 I
e proCoq1.NW_012142813v1        17191 378 +     80520 I

a score=26996.000000
s hg38.chr15_KI270850v1_alt    339153 2 +    430880 CT
s panTro5.chr15              63492543 2 +  83230942 CT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80449677 2 +  99763055 CT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        49835 2 -   1709092 CT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17201596 2 - 121039945 CT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60890208 2 + 169600520 CT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108416963 2 - 171882078 CT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        27405 2 -   2311642 CT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        25563 2 -   1987038 CT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21106099 2 -  24206276 CT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        21290 2 -   1397330 CT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        44591 2 -   1784207 CT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22241152 2 + 158406734 CT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50476946 2 +  54856640 CT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       620565 2 -   2910086 CT
i cebCap1.NW_016107610v1    C 0 C 0
s mm10.chr7                  81352278 2 + 145441459 CT
i mm10.chr7                 I 21 C 0
s canFam3.chr3               54410484 2 +  91889043 CT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1800701 2 +   3943991 TT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113272146 264 + 116334831 I
e proCoq1.NW_012142813v1        17191 378 +     80520 I
e aotNan1.NW_018505940v1     40648655 0 +  42888418 C
e otoGar3.GL873530             634655 188 -  36342412 I

a score=1603443.000000
s hg38.chr15_KI270850v1_alt    339155 129 +    430880 CACAGAGAAATTAAAGGCTAGGATCCTGAAGGACAGAGGGGT------------------GGGAG-TGCTTACGATATTTGTATGAGATGGTTACTGG-CCCAACCTAGCC-TTCAGAGGG-TTTGTG-CCAGAGCAGT-GGAAATGACTGGC
s panTro5.chr15              63492545 129 +  83230942 CACAGAGAAATGAAAGGCTAGGATCCTGAAGGACAGAGGGGT------------------GGGAG-TGCTTACGATATTTGTATGAGATGGTTACTGG-CCCAACCTAGCC-TTCAGAGGG-TTTGTG-CCAGAGCAGT-GGAAATGACTGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80449679 129 +  99763055 CACAGAGAAATGAAAGGCTAGGATCCTGAAGGACAGAGGGGT------------------GGGAG-TGCTTACGATATTTGTATGAGATGGTTACTGG-CCCAACCTAGCC-TTCAGAGGG-TTTGTG-CCAGAGCAGT-GGAAATGACTGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        49837 129 -   1709092 CACAGAGAAATTAAATGCTAGGATCCTGAAGGACAGAGGGGT------------------GGGAG-TGCTTACGATATTTGTATGAGATGGTTACTGG-CCCAACCTAGCC-TTCAGAGGG-TTTGTG-CCAGAGCAGT-GGAAATGACTGGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17201598 129 - 121039945 CACAGAGAAATTAAAGGCTAGGATCCTGAAGCACAGAGGGGT------------------GGGAG-TACTTACGATATTTGTATGAGATGGTTACTGG-CCCAACCTAGGC-TTCAGAGGG-TTTGTG-CCAGAGCAGT-GGAAATGACTGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60890210 130 + 169600520 CACAGAGAAATTAAAGGCTAGGATCCTAAAGGACAGAGGGAT------------------GGGAG-TGCTTATGATATTTATATGAGATGGTTACTGG-CCCAACCTAGGC-TTCAGAGAG-TTTGTGCCCAGAGCAGT-GGAAATGACTGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108416965 130 - 171882078 CACAGAGAAATTAAAGGCTAGGATCCTAAAGGACAGAGGGAT------------------GGGAG-TGCTTATGATATTTATATGAGATGGTTACTGG-CCCAACCTAGGC-TTCAGAGAG-TTTGTGCCCAGAGCAGT-GGAAATGACTGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        27407 130 -   2311642 CACAGAGAAATTAAAGGATAGGATCCTAAAGGACAGAGGGAT------------------GGGAG-TGCTTATGATATTTATATGAGATGGTTACTGG-CCCAACCTAGGC-TTCAGAGAG-TTTGTGCCCAGAGCAGT-GGAAATGACTGAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        25565 130 -   1987038 CACAGAGAAATTAAAGGCTAGGATCCTAAAGGACAGAGGGAT------------------GGGAG-TGCTCATGATATTTATATGAGATGGTTACTGG-CCCAACCTAGGC-TTCAGAGAG-TTTGTGCCCAGAGCAGT-GGAAATGACTGAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21106101 130 -  24206276 CACAGAGAAATTAAAGGCTAGGATCCTAAAGGACAGAGGGAT------------------GGGAG-TGCTTATGATATTTATATGAGATGGTTACTGG-CCCAACCTAAGC-TTCAGAGAG-TTTGTGCCCAGAGCAGT-GGAAATGACTGAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        21292 130 -   1397330 CGCAGAGAAATTAAAGGCTAGGATCCTAAAGGACAGAGGGAT------------------GGGAG-TGCTTATGATATTTATATGAGATGGTTACTGG-CCCAACCTAGGC-TTCAGAGAG-TTTGTGCCCAGAGCAGT-GGAAATGACTGAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        44593 130 -   1784207 CACAGAGAAATTAAAGGCTAGGATCCTAAAGGACAGAGGGAT------------------GGGAG-TGCTTATGATATCTGTATGAGATGGTTACTGG-CCCAACCTAGGC-TTCAGAGAG-TTTGTGCCCAGAGCAGT-GGAAATGACTGAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22241154 131 + 158406734 CACAGAGAATTTAAAGGCTAGGATCCTGAAGGACAGAGGGGT------------------GGGAG-TGTTTATGGTATTTGTACGAGATGGTTACTAGCCCCAACCTAGGC-TTCAGAGGG-TTTGTACCCAGAGCAGT-GGAAATGACTGGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50476948 131 +  54856640 CACAGAGTATTTAAAGGCTAGGATCCTGAAGGACAGAGGGGT------------------GAGAG-TGCTTATGATATTTGTATGAGATGGTTACTAGCCCCAACCTAGGC-TTCAGAGGG-TTTGTACCCAGAGCAGT-GGAAATGACTGGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       620567 129 -   2910086 --CAGAGTATTTAAAGGCTAGGATCCTGAAGGACAGAGGGGT------------------GAGAG-TGCTTATGATATTTGTATGAGATGGTTACTAGCCCCAACCTAGGC-TTCAGAGGG-TTTGTACCCAGAGCAGT-GGAAATGACTGGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40648655 129 +  42888418 --CAGAGAATTTAAAGGCTAGGATCCTGAAGGACAGAGGGGT------------------GGGAG-TGCTTATGATATTTGTATGAGATGGTTACTAGCCCCAACCTAGGC-TTCAGAGGG-TTTGTACCCAGAGCAGT-GGAAATGACTGGA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             634843 146 -  36342412 CACAGATAAATTAAAGATTAGGAGCCTGGAGGACAGAGAGGCTCCTCTGTCCTCTCCTCAGAGAG--GCTTGCAGTACTTTTGTGAGATGGTTACTGC-CCCAACCTAGGC-CTTGGAGAA--CTATGGCAGGGGGAGT-GGGGCTAAATGGA
i otoGar3.GL873530          I 188 C 0
s mm10.chr7                  81352280 129 + 145441459 CACAGAACACTTAACAGTTAGAAGCACGGAGGACAGAAAGAT------------------GG--A-TGCTTATGGTGTCACT--GAGATAGTTACTCGTCTCAACCAGGATACTTAGAGGGCTTTGTTCCAGCAACAAT-GAGAATATCTTCC
i mm10.chr7                 C 0 I 175
s canFam3.chr3               54410486 124 +  91889043 ----CAGAAACTGAAGGCTAACAGTA-GAAGGTCAGAGGGTT------------------GGGA--TGCTTGAAGTCCCACTAGGAGATGGTCACTGG-CCCAATGTGGGC-ATCAACGGG-TGTGTGTCAGGAACAGT-GGGAGTGACTGGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1800703 130 +   3943991 CATTGAGGAATTAAAGGACAAGAGTCTGAAGGACAGAAGGGT------------------GGGGGTTGCTCATGGTATTTGCATGAGATGGTTACTGG-TCCAATCTAG-C-ATTACAGGG-TTTGAG-CTAGAACAGTGGGAAATAACTGAA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113272146 264 + 116334831 I
e proCoq1.NW_012142813v1        17191 378 +     80520 I

a score=31707.000000
s hg38.chr15_KI270850v1_alt    339284 3 +    430880 GAG
s panTro5.chr15              63492674 3 +  83230942 GAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80449808 3 +  99763055 GAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        49966 3 -   1709092 GAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17201727 3 - 121039945 GAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60890340 3 + 169600520 GAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108417095 3 - 171882078 GAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        27537 3 -   2311642 GAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        25695 3 -   1987038 GAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21106231 3 -  24206276 GAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        21422 3 -   1397330 GAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        44723 3 -   1784207 GAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22241285 3 + 158406734 GAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50477079 3 +  54856640 GAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       620696 3 -   2910086 GAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40648784 3 +  42888418 GAC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             634989 3 -  36342412 GAG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54410610 3 +  91889043 GGG
i canFam3.chr3              C 0 I 21
s dasNov3.JH570731            1800833 3 +   3943991 AAG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113272146 264 + 116334831 I
e proCoq1.NW_012142813v1        17191 378 +     80520 I
e mm10.chr7                  81352409 175 + 145441459 I

a score=445231.000000
s hg38.chr15_KI270850v1_alt    339287 42 +    430880 AGGTTGGGTAGAAAGTCACAT-ACAAG-A--TCCCTGGAGTCTTAA
s panTro5.chr15              63492677 42 +  83230942 AGGTTGGGTAGAAAGTCACAT-ACAAG-A--TCCCTGGAGTCTTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80449811 42 +  99763055 AGGTTGGGTAGAAAGTCACAT-ACAAG-A--TCCCTGGAGTCTTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        49969 42 -   1709092 AGGTTGGGTAGAAAGTCACAT-ACAAG-A--TCCCTGGAGTCTTAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17201730 43 - 121039945 AGGTTGGGTAGAAAGTCACATAACAAG-A--TCCCTGGAGTCTTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60890343 42 + 169600520 AGGCTGGGTAGAAAGTCACAT-ACAAG-A--TCCCTGGAGTCTTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108417098 42 - 171882078 AGGCTGGGTAGAAAGTCACAT-ACAAG-A--TCCCTGGAGTCTTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        27540 42 -   2311642 AGGCTGGGTAGAAAGTCacat-acaag-a--tccctggagtcttga
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        25698 42 -   1987038 AGGCTGGGTAGAAAGTCacat-acaag-a--tccctggagtcttga
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21106234 42 -  24206276 AGGCTGGGTAGAAAGTCACAT-ACAAG-A--TCCCTGGAGTCTTGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        21425 42 -   1397330 AGGCTGGGTAGAAAGTCACAT-ACAAG-A--TCCCTGGAGTCTTGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        44726 42 -   1784207 AGGCTGGGTAGAAAGTCACAT-ACAAG-A--TCCCTGGAGTCTTGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22241288 41 + 158406734 AGGTCGGGTAGTAAGTCACAT-ACAAG-A---TCCTGGAGTCTTGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50477082 42 +  54856640 AGGTCGGGTAGAAAGTCACAT-ACAAG-A--TTCCTGGAGTCTTGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       620699 42 -   2910086 AGGTCGGGTAGAAAGTCACAT-ACAAG-A--TCCCTGGAGTCTTAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40648787 42 +  42888418 AGGTTGGGTAGAAAGTCAAAT-ACAAG-A--TCCCTGGAGTCTTGC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             634992 42 -  36342412 A--CAGGGTAAAAAGCCATAA-ACAAG-AGATCCCTGAGCTCTTGC
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH570731            1800836 43 +   3943991 ATGAAGGGTGGAAACTTGTCC-ATAGGTA--ATATTGAGATCTTTC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113272146 264 + 116334831 I
e proCoq1.NW_012142813v1        17191 378 +     80520 I
e mm10.chr7                  81352409 175 + 145441459 I
e canFam3.chr3               54410613 21 +  91889043 I

a score=237071.000000
s hg38.chr15_KI270850v1_alt    339329 19 +    430880 -------------AGGGCT----------------GGGGCTGACCATG
s panTro5.chr15              63492719 19 +  83230942 -------------AGGGCT----------------GGGGCTAACCATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80449853 19 +  99763055 -------------AGGGCT----------------GGGGCTGACCATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        50011 19 -   1709092 -------------AGGGCT----------------GGGGCTGACCATG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17201773 19 - 121039945 -------------AGGGCT----------------GGGGCTGACCATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60890385 19 + 169600520 -------------AGGGCT----------------GGGGCTGACCGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108417140 19 - 171882078 -------------AGGGCT----------------GGGGCTGACTGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        27582 19 -   2311642 -------------agggct----------------ggggctgaccgtg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        25740 19 -   1987038 -------------agggct----------------ggggctgaccgtg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21106276 19 -  24206276 -------------AGGGCT----------------GGGGCTGACCGTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        21467 19 -   1397330 -------------AGGGCT----------------GGGTCTGACCGTG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        44768 19 -   1784207 -------------AGGGCT----------------GGGGCTGACCATG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22241329 19 + 158406734 -------------AGGGCT----------------GGGGCTGACCATG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50477124 19 +  54856640 -------------AGGGCT----------------GGGGCTGACCACG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       620741 19 -   2910086 -------------AGGGCT----------------GGGGCTGACCATG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40648829 19 +  42888418 -------------AGGGCT----------------GGGGCTGACCATG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             635034 35 -  36342412 -------------AGAGCTGAGTAACACTAGGGTAGGAGCTGACCATG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81352584 18 + 145441459 -------------AGGGTA----------------AGTGCTGATATC-
i mm10.chr7                 I 175 C 0
s canFam3.chr3               54410634 19 +  91889043 -------------agggca----------------ggagctgcctgtg
i canFam3.chr3              I 21 C 0
s dasNov3.JH570731            1800879 32 +   3943991 AGAGTAACACACTAGGTCA----------------AGTGTTGACCGTG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113272146 264 + 116334831 I
e proCoq1.NW_012142813v1        17191 378 +     80520 I

a score=563996.000000
s hg38.chr15_KI270850v1_alt    339348 39 +    430880 TCCTTTGCCTCTGAATCTCCTGAACCTGGAACAAA-----ACCT
s panTro5.chr15              63492738 39 +  83230942 TCCTTTGCCTCTGAATCTCCTGAACCTGGAACAAA-----ACCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80449872 39 +  99763055 TCCTTTGCCTCTGAATCTCCTGAACCTGGAACAAA-----ACCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        50030 39 -   1709092 CCCTTTGCCTCTGAATCTCCTGAACCTGGAACAAA-----ACCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17201792 39 - 121039945 TCCTTTGCCTCTGAATCTCCTGAACCTGGAACAAA-----ACCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60890404 39 + 169600520 TCCTTTGCCTCTGAATCTCCTGAACCTGGAACAAA-----ACCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108417159 39 - 171882078 TCCTTTGCCTCTGAATCTCCTGAACCTGGAACAAA-----ACCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        27601 39 -   2311642 tcctttgcctctgaatctcctgaacctggaacaaa-----acct
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        25759 39 -   1987038 tcctttgcctctgaatctcctgaacctggaacaaa-----acct
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21106295 39 -  24206276 TCCTTTGCCTCTGAATCTCCTGAACCTGGAACAAA-----ACCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        21486 38 -   1397330 TCCTTTGCCTCTGAATCTCCTGAA-CTGGAACAAA-----ACCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        44787 38 -   1784207 TCCTTTGCCTCTGAATCTCCTGACCCT-GAACAAA-----ACCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22241348 39 + 158406734 TCCTTTGCCTCTGAATCTCTTGAACGTGGAACAAA-----GCCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50477143 39 +  54856640 TCCTTTGCCTCTGAATGTCTTGAACGTGAAACAAA-----ACCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       620760 39 -   2910086 TCCTTTGCCTCTGAATCTCCTGAACGTGGAACAAA-----ACCT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40648848 39 +  42888418 TCCTTTGCCTCTGAATCTCTTGAATATGGAACAAA-----ACCT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113272410 39 + 116334831 TCCTTTGCCCCTGAATCTCCTGAGCCTAGAAAAAA-----ACCT
i micMur3.chr9              I 264 I 57
s otoGar3.GL873530             635069 44 -  36342412 TTCTTCGGCTCTGAATCTCCTTAGCCTAAAAAAAAAAGATACTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81352602 37 + 145441459 TTCTTT-CTTCTGAGTCTC-TGACCCCAGAATCAA-----GCCC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54410653 39 +  91889043 tcttttgcccctgaggcccctgagtccagaacaaa-----acct
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1800911 37 +   3943991 TCCCTTGCCTCTGAATCCC--AAGCCTAAAAGAAA-----ATAT
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        17191 378 +     80520 I

a score=327421.000000
s hg38.chr15_KI270850v1_alt    339387 30 +    430880 TGTAGAGCAGGTGGAGGAGTCCAGAATGAA
s panTro5.chr15              63492777 30 +  83230942 TGTAGAGCAGGTGGAGTTGTCCAGAATGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80449911 30 +  99763055 TGTAGAGCAGGTGGAGTTGTCCAGAATGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        50069 30 -   1709092 TGTAGAGCAGGTGGAGGAGTCCAGAATGAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17201831 30 - 121039945 TGTAGAGCAGGTGGAGGATTCCAGAATGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60890443 30 + 169600520 GGTAGAGCAAGTGTAGGACTCCAGAACAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108417198 30 - 171882078 GGTAGAGCAAGTGTAGGACTCCAGAACGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        27640 30 -   2311642 ggTAGAGCAAGTGTAGGACTCCAGAACGAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        25798 30 -   1987038 ggTAGAGCAAGTGTAGGACTCCAGAACAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21106334 30 -  24206276 GGCAGAGCAAGTGTAGGACTCCAGAACGAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        21524 30 -   1397330 GGTAGAGCAAGTGTAGGACTCCAGAACAAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        44825 30 -   1784207 GGTAGAGCAAGTGGAGAACTCCAGAATGAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22241387 30 + 158406734 GGTAGAGCAGGCAGAAGACTCCAGAATGAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50477182 30 +  54856640 GGTAGAGCAGGCAGAAGACTCCAGAATGAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       620799 30 -   2910086 GGTAGAGCAGGAAGAAGACTCCAGAATGAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40648887 30 +  42888418 GGTAGAGCAGGCAGAAGACTCCAGAATGAA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             635113 30 -  36342412 GGTATTACAGGCAGAGGACTCCACAATGAA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81352639 30 + 145441459 AGTACAGCAGGCAGAGGGCTTAACGATGAT
i mm10.chr7                 C 0 I 18
s canFam3.chr3               54410692 30 +  91889043 ggcaTGGCAGGCAGAAGACTCCAAGAGGGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1800948 30 +   3943991 GGCGTAGTGGGGTGGAAACTCCACAATGAA
i dasNov3.JH570731          C 0 I 44
e micMur3.chr9              113272449 57 + 116334831 I
e proCoq1.NW_012142813v1        17191 378 +     80520 I

a score=30843.000000
s hg38.chr15_KI270850v1_alt    339417 2 +    430880 GT
s panTro5.chr15              63492807 2 +  83230942 GT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80449941 2 +  99763055 GT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        50099 2 -   1709092 GT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17201861 2 - 121039945 GT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60890473 2 + 169600520 GT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108417228 2 - 171882078 GT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        27670 2 -   2311642 GT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        25828 2 -   1987038 GT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21106364 2 -  24206276 GT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        21554 2 -   1397330 GT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        44855 2 -   1784207 GT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22241417 2 + 158406734 GT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50477212 2 +  54856640 GT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       620829 2 -   2910086 GT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40648917 2 +  42888418 GT
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        17569 2 +     80520 GT
i proCoq1.NW_012142813v1    I 378 C 0
s otoGar3.GL873530             635143 2 -  36342412 AT
i otoGar3.GL873530          C 0 I 43
s mm10.chr7                  81352687 2 + 145441459 GA
i mm10.chr7                 I 18 I 14
s canFam3.chr3               54410722 2 +  91889043 AT
i canFam3.chr3              C 0 I 38
s dasNov3.JH570731            1801022 2 +   3943991 GT
i dasNov3.JH570731          I 44 C 0
e micMur3.chr9              113272449 57 + 116334831 I

a score=3095173.000000
s hg38.chr15_KI270850v1_alt    339419 219 +    430880 GAAGATCTAA------A-------AAT------------ATGTCTTGAAGCAGGAAGAGATCTGAGGCAGAAACCAGCAAGGAGGCAAAAACAGTAGTTTCAAAGGACAGGTGATTAAGACTTGGACAAGGCTGGTGGCAACGAGCAGAGAACAGGCCAAGACCAAAG---AGATTCTTCAACAGAAGAGTCTGCAGTAC-TCAGACAGCATAAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGG
s panTro5.chr15              63492809 219 +  83230942 GAAGATCTAA------A-------AAT------------ATGTCTTGAAGCAGGAAGAGATCTGAGGCAGAAACCAGCAAGGAGGCAAAAACAGTAGTTTCAAAGGACAGGTGATTAAGACTTGGACAAGGCTGGTGGCAACGAGCAGAGAACAGGCCAAGACCAAAG---AGATTCTTCAACACAAGAGTCTGCAGTAC-TCAGACGGCATAAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80449943 219 +  99763055 GAAGATCTAA------A-------AAT------------ATGTCTTGAAGCAGGAAGAGATCTGAGGCAGAAACCAGCAAGGAGGCAAAAACAGTAGTTTCAAAGGACAGGTGATTAAGACTTGGACAAGGCTGGTGGCAACGAGCAGAGAACAGGCCAAGACCAAAG---AGATTCTTCAACACAAGAGTCTGCAGTAC-TCAGACGGCATAAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        50101 219 -   1709092 GAAGATCTAA------A-------AAT------------ATGTCTTGAAGCAGGAAGAGATCTGAGGCAGAAACTAGCAAGGAGGCAAAAACAGTAGTTTCAAAGGACAGGTGATTAAGACTTGGATAAGGCTGGTGGCAACGAGCAGAGAACAGGCCAAGACCAAAG---AGATTCTTCAACAGAAGAGTCTGCAGTAC-TCAGACAGCATAAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17201863 219 - 121039945 GAAGATCTAA------A-------AAT------------ATGTCTTGAAGCAGGAAGAGATCTGAGGCAGAAACCAGCAAGGAGGCAAAAACAGTAGTTTCAAAGAACAGGTGATTAAGACTTGGACAAGGCTGGTGGCAACGAGCAGAGAACAGGCCAAGACCAAAG---AGATTCTTCAACAGAAGAGTCTGCAGTAC-TCAGACAGCATAAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60890475 217 + 169600520 GAAGATCTAA------A-------AAT------------ATGTCTTGAAGCA-GAAGAGATCTgaggcagaaaccagcaaggaggcaaaaacagtactttcaaaggacaggtgattaagacttggataaggctggtggcaatgAGCAGAGAACAGGCCAAGACCAAAG---AGATTCTTCAACAG-AGAGTCTGCAGTAC-TCAGATGGCATAAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108417230 218 - 171882078 GAAGATCTAA------A-------AAT------------ATGTCTTGAAGCAGGAAGAGATCTGAGGCAGAAACCAGCAAGGAGGCAAAAACAGTACTTTCAAAGGACAGGTGATTAAGACTTGGATAAGGCTGGTGGCAATGAGCAGAGAACAGGCCAAGACCAAAG---AGATTCTTCAACAG-AGAGTCTGCAGTCC-TCAGATGGCATAAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        27672 218 -   2311642 GAAGATCTAA------A-------AAT------------ATGTCTTGAAGCAGGAAGAGATCTGAGGCAGAAACCAGCAAGGAGGCAAAAACAGTACTTTCAAAGGACAGGTGATTAAGACTTGGATAAGGCTGGTGGCAATGAGCAGAGAACAGGCCAAGACCAAAG---AGATTCTTCAACAG-AGAGTCTGCAGTAC-TCAGATGGCATAAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        25830 218 -   1987038 GAAGATCTAA------A-------AAT------------ATATCTTGAAGCAGGAAGAGATCTGAGGCAGAAACCAGCAAGGAGGCAAAAACAGTACTTTCAAAGGACAGGTGATTAAGACTTGGATAAGGCTGGTGGCAATGAGCAGAGAACAGGCCAAGAACAAAG---AGATTCTTCAACAG-AGAGTCTGCAGTAC-TCAGACGGCATAAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21106366 218 -  24206276 GAAGATCTAA------A-------AAT------------ATGTCTTGAAGCAGGAAGAGATCTGAGGCAGAAACCAGCAAGGAGGCAAAAACAGTACTTTCAAAGGACAGGTGATTAAGACTTGGATAAGGCTGGTGGCAATAAGCAGAGAACAGGCCAAGACCAAAG---AGATTCTTCAACAG-AGAGTCTGCAGTAC-TCAGACGGCATAAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        21556 218 -   1397330 GAAGATCTAA------A-------AAT------------ATATCTTGAAGCAGGAAGAGATCTGAGGCAGAAACCAGCAAGGAGGCAAAAACAGTACTTTCAAAGGACAGGTGATTAAGACTTGGATAAGGCTGGTGGCAACGAGCAGAGAACAGGCCAAGAACAAAG---AGATTCTTCAACAG-AGAGTCTGCAGTAC-TCAGACGGCATAAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        44857 218 -   1784207 GAAGATCTAA------A-------AAT------------ATGTCTTCAAGCAGGAAGAGATCTGAGGCAGAAACCAGCAAGGAGGCAAAAACAGTACTTTCAAAGGACAGGTGATTAAGACTTGGACAAGGCTGGTGGCAATGAGCAGAGAACAGGCCAAGACCAAAG---AGATTCTTCAACAG-AGAGTCTGCAGAAC-TCAGATGGCATAAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22241419 209 + 158406734 AAAGATCTAA------A-------AAC------------ATGTCTTAAAGAAA---GAGATCTAAGGCAGAAACCAGCAAGGAGG-AAAAACAATAGTTTCTAAGGATGGGTGATTAAAACCTGGACAAGTCTGGTGGCAATGAACAGAGAACAGGC------CAAGG---AGATTCTTTAAGAGAAGAGTCTGCAGTAA-TCAGACTGCATTAGCAGGATGGGCAAGCAAAGAAGAATCAGGCCTGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50477214 216 +  54856640 AAAGATCTAA------A-------AAT------------ATGTCTTGAAGCAAGAGGAGATCTGAGGCAGAAACCAGCAGAGAGG-AAAAACAGTAGTTTCTAAGGACAGGTGATTAAAACCTAGACAAGGCCGGTGGCAATGAACAGAGAACAGGCCAAGATCAAGG---GGATTCTTTAAGAGAATCGTCTGCAGTAACTCAGACTGCATTAGCAGGATGGGCAAGCA---AGGAATCAGGCCTGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       620831 219 -   2910086 AAAGATCTAA------A-------AAT------------ATGTCTTGAAGCAAGAGGAGATCTGAGGCAGAAACCAGCAAGGAGG-AAAAACAGTAGTTTCTAAGGACAGGTGATTAAAACCTAGACAAGGCTGGTGGCGATGAACAGAGAACAGGCCAAGATCAAGG---AGATTCTTGAAGAGAAGAGTCTGCAGTAACTCAGACTGCATTAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40648919 222 +  42888418 AAAGATCTAA------A-------AAT------------ATGTCTTGAAGCAAGAGGAGATCTGAGGCAGAAACCAGCAAGGAGG-AAAAACAGTAGTTTCTAAGGACAGGTGATTAAAACCTGGACAAGGCTGGTGGCAATGAACAGAGAACAGGCCAAGATCAAGGATCAGATTCTTTAAGAGAAGAGTCTGCAGTAACCCAGACTGCATTAGCAGGATGGGCAAGCAAGGAAGAATCAGGCCTGG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113272506 218 + 116334831 GAAGATCTAAAA----A-------AAA------------CTGTCTTGAAGCAGGAAGAGATCTGAAGCAGAAACCAGCCAGGAGGC-AAAGCAGGAG-TTCAGAGGATAGGTGACTCAGGCTTGGACAAGGCTGGCAACAACGGGCATGGAACAGGCCAAGACTGAGG---AGATTCTTCAGTGA-AGTGTCTGCAGCAC-TAAGCCTGCACAGGCATGGTGGGCAAACAAGTGAGAAGCAAGACTGA
i micMur3.chr9              I 57 C 0
s proCoq1.NW_012142813v1        17571 218 +     80520 GAAGATCTAAAA----A-------AAA------------CTGGCTTAAAGCAGGAAGAGATCTGAAGCAGAAACCAGCAAGGAGGC-AAAGCAGGAG-TGCAGAGGACAGGTGATTAAGCCTTGGACAAGGCTGGCAGCAACGGGGACAGAACAGGCCGAGACTGAGG---AGATCCTTCAGCGA-AGTGTCTGCAGCAC-TGAGACTGTGAAGGCATGGTGGGCAAACAAGGAAGAAGCAGTACTGG
i proCoq1.NW_012142813v1    C 0 I 29
s otoGar3.GL873530             635188 218 -  36342412 GAAGAATTAAGATCTTA-------AAA------------ATGTCTTGAAGCAGGAAGAAATCTGATCCAGAAACCAACAAGGAGACAAAAGCAGCAG-GTTAAAGGACAGGTGACTAAGACTTGGACACAACTGGTGGCAACAGGCACAGAACAGGCCAAGGCTT-GG---TGATTCTTC--TGA-AGTGTCTGCAGTGC-TAA--TGGCATAAGCATGCTGGACAATCAAGGAAGAATCTGTTCTAA
i otoGar3.GL873530          I 43 C 0
s mm10.chr7                  81352703 192 + 145441459 AATTACCTAA------ATTTTCTTTAA------------ATGTTTTGAAGCAGGAAGAGAACTGAGGTAAACACCA----AGAAGCAAAAACAAT---TTAAAAG-----------CAGATCTGAACAAGGTTGGTGGCAATGGTC-----ACAGGTTACAAGGAAAG---ATATCCTTCAATAG--ACATGTGCAGAGG-TCAGACTTCCTGAGTGGG------AATCGAGGAAGAGCCAGGCA---
i mm10.chr7                 I 14 C 0
s canFam3.chr3               54410762 209 +  91889043 GAAGATCCAA------C-------AATGACAACAGCAAAAAGTCTCGAAGCAGGAAGAGATGCGAGGCAGAA-------------------CTATAG-CTGAGAGGACAGGTGAGGAGGACCTAGAGGGTCCTAGTGGTGCTGGGCACAGAACAAGCGGAGACCAAGA---AGATTCCTTGACAGAGGAAGCTGCACAAG-TCAGATGGCCTGGGCCTGGCGGG--AGAATGGAAGAGTCGGGGCTGA
i canFam3.chr3              I 38 C 0
s dasNov3.JH570731            1801024 219 +   3943991 GAAGATTAAAAAAAA-A-------AAA------------AAGCCTTGAAGCAGGAAGGGAAGTGAGGCAGCAACCAGCAAAAAGGCAAAAGCAGTAG-ATCACAGGACAGGTGGTTAAGGCCTGGACAAGGCTAGTGGCACTGGGCATAGACTAGGCTAAGACCAAGG---AGATTCTTTAAAAGAGGTGTCTGCAGAAC-TCAGACTACCTAGGCATGGTGGGTAAAC----AAAAATCAGGACTGA
i dasNov3.JH570731          C 0 C 0

a score=300419.000000
s hg38.chr15_KI270850v1_alt    339638 28 +    430880 TAGGTGCTGGGCCTACACGGTCTTGGGA
s panTro5.chr15              63493028 28 +  83230942 TAGGTGCTGGGCCTACACGGTCTTGGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80450162 28 +  99763055 TAGGTGCTGGGCCTACACGGTCTTGGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        50320 28 -   1709092 TAGGTGCTGGGCCTACACGGTCTTGGGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17202082 28 - 121039945 TAGGTGCTGGGCCTACACGGTCTTGGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60890692 28 + 169600520 TAGGTGCTGGGCCTACACAGTCATGGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108417448 28 - 171882078 TAGGTGCTGGGCCTACACAGTCGTGGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        27890 28 -   2311642 TAGGTGCTGGGCCTACACAGTCGTGGGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        26048 28 -   1987038 TAGGTGCTGGGCCTACACAGTCTTGGGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21106584 28 -  24206276 AAGGTGCTGGGCCTACACAGTCTTGGGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        21774 28 -   1397330 TAGGTGCTGGGCCTACACAGTCTTGGGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        45075 28 -   1784207 TAGATGCTGGGCCTACACAGTCTTGGGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22241628 28 + 158406734 TGGGTGTTGGGCCTACACCGTCCTGGGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50477430 28 +  54856640 TGGGTGTTAGGTCTACACCATCTTGGGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       621050 28 -   2910086 TGGGTGTTGGGCCTACACCGTCTTGGGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40649141 28 +  42888418 TGGGTGTTGGGCCTACACTGTCTTGGGA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113272724 16 + 116334831 -GGGGGCTAGGCCTACC-----------
i micMur3.chr9              C 0 C 0
s otoGar3.GL873530             635406 27 -  36342412 -TGGGGCCAGATCTACAGAACCTTGTGA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81352895 27 + 145441459 -AGGCCTGGAGTCTGAAGAACCCAGTAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54410971 28 +  91889043 GGGGATCCAGGCCTAGAAGACCCTGGGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1801243 27 +   3943991 TGAGTTCTAACATTA-ATGACATTGGGG
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        17789 29 +     80520 I

a score=2461820.000000
s hg38.chr15_KI270850v1_alt    339666 171 +    430880 TGAGAGGACCT-----GGCAGAAGTTACAAGAGGGGAGCCA----ATTTCACTGGAAGATGAAAAAGC----------------------------------------CAATTTTG--------C-CCA--------------------------------------CAAAAGAG----TTTGGGATTACAGGACATCCCGAAGAAGG-------------------ATCCCACAGGAAGGTGAGGCTCAGGTAGGACATGA-GGCTAGAAAGGTGAATCTGGGTCTAAAG
s panTro5.chr15              63493056 171 +  83230942 TGAGAGGACCT-----GGCAGAAGTTATAAGAGGGGAGCCA----ATTTCACTGGAAGATGAAAAAGC----------------------------------------CAATTTTG--------C-CCA--------------------------------------CAAAAGAG----TTTGGGATTACAGGACATCCCGAAGAAGG-------------------ATCCCACAGGAAGGTGAGGCTCAGGTAGGACATGA-GGCTAGAAAGGTGAATCTGGGTCTAAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80450190 171 +  99763055 TGAGAGGACCT-----GGCAGAAGTTACAAGAGGGGAGCCA----ATTTCACTGGAAGATGAAAAAGC----------------------------------------CAATTTTG--------C-CCA--------------------------------------CAAAAGAG----TTTGGGATTACAGGACATCCCGAAGAAGG-------------------ATACCACAGGAAGGTGAGGCTCAGGTAGGACATGA-GGCTAGAAAGGTGAATCTGGGTCTAAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        50348 170 -   1709092 TGAGAGGACCT-----GGCAGAAGTTACAAGAGGGGAGCCA----ATTTCACTGGAAGATGAAAAAGC----------------------------------------CAATTTTG--------C-CCA--------------------------------------CAAAAGAG----TTTGGGATTACAGGACATCCCAAAGAAGG-------------------ATCCCACAGGAAGGTGAGGCTCAGGTAGGACATGA--GCTAGAAAGGTGAATCTGGGTCTAAAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17202110 171 - 121039945 TGAGAGGACCT-----GGCAGAAGTTACGAGAGGGGAGCCA----ATTTCACTGGAAGATGAAAAAGC----------------------------------------CCATTTTG--------C-CCA--------------------------------------CAAAAGAG----TTTGGGAATACAGGACATCCCGAAGGAGG-------------------ATCCCACAGGAAGGTGGGGCTCAGGTAGGACATGA-GGCTAGAAAGGTGAATCTGGGTCTAAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60890720 171 + 169600520 TGAGAGGACCT-----GGCAGAAGTTACGAGAGGGGAGCCA----ATTTCACTGGAAGATGAAAAAGC----------------------------------------CCATTTTG--------C-CCA--------------------------------------CAAAAGAG----TTTGGGATTACAAGACATCCTGAAGGAGG-------------------GTACCACAGGAAGGTGGGGCTCAGGTAGGACATGA-GGCTAGAAAGGTGAATCTGGGTCTAAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108417476 171 - 171882078 TGAGAGGACCT-----GGCAGAAGTTACGAGAGGGGAGCCA----ATTTCACTGGAAGATGAAAAAGC----------------------------------------CCATTTTG--------C-CCA--------------------------------------CAAAAGAG----TTTGGGATTACAAGACATCCTGAAGGAGG-------------------GTACCACAGGAAGGTGGGGCTCAGGTAGGACATGA-GGCTAGAAAGGTGAATCTGGGTCTAAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        27918 171 -   2311642 TGAGAGGACCT-----GGCAGAAGTTACGAGAGGGGAGCCA----ATTTCACTGGAAGATGAAAAAGC----------------------------------------CCATTTTG--------C-CCA--------------------------------------CAAAAGAG----TTTGGGATTACAAGACATCCTGAAGGAGG-------------------GTACCACAGGAAGGTGGGGCTCAGGTAGGACATGA-GGCTAGAAAGGTGAATCTGGGTCTAAAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        26076 171 -   1987038 TGAGAGGACCT-----GGCAGAAGTTACGAGAGGGGAGCCA----ATTTCACTGGAAGATGAAAAAGC----------------------------------------CCATTTTG--------C-CCA--------------------------------------CAAAAGAG----TTTGGGATTACCAGACATCCTGAAGGAGG-------------------GTACCACAGGAAGGTGGGGCTCAGGTAGGACACGA-GGCTAGAAAGGTGAATCTGGGTCTAAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21106612 171 -  24206276 TGAGAGGACCT-----GGCAGAAGTTACGAGAGGGGAGCCA----ATTTCACTGGAAGATGAAAAAGC----------------------------------------CCATTTTG--------C-CCA--------------------------------------CAAAAGAG----TTTGGGATTACAAGACATCCTGAAGGAGG-------------------GTACCACAGGAAGGTGGGGCTCAGGTAGGACATGA-GGCTAGAAAGGTAAATCTGGGTCTAAAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        21802 171 -   1397330 TGAGAGGACCT-----GGCAGAAGTTACGAGAGGGGAGCCA----ATTTCACTGGAAGATGAAAAAGC----------------------------------------CCATTTTG--------C-CCA--------------------------------------CAAAAGAG----TTTGGGATTACCAGACATCCTGAAGGAGG-------------------GTACCACAGGAAGGTGGGGCTCAGGTAGGACACGA-GGCTAGAAAGGTGAATCTGGGTCTAAAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        45103 171 -   1784207 TGAGAGGACCT-----GGCAGAAGTTACGAGAGGGGAGCCA----ATTTCACTGGAAGATGCAAAAGC----------------------------------------CCATTTTG--------C-CCA--------------------------------------CAAAAGAG----TTTGGGATTACAGGACATCCTGAAGGAGG-------------------GTACCACAGGAAGGTGGGGCTCAGGTAGGACATGA-GGCTAGAAAGGTGAATCTGGGTCTAAAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22241656 167 + 158406734 TGAGAGGACCT-----GGCAGAAGTTACA--AGCGGAGCCA----ATTTCACTGTAAGATGAAAAGGC----------------------------------------CCATTTTG--------T-CCA--------------------------------------CAAAAGAG----TTTGGGATTACAGGAAATCCCAAAGGG---------------------GTCTCACAGGAAGGTGGTGCTCAGGTAGGACATGA-GGCTAGAAAGGTAAATCTGGGTCTAAAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50477458 169 +  54856640 TGAGAGGACCT-----GGCAGAAGATACA--AGGGGGGCCA----ATTTCACTGTAAGATGAAAAAGC----------------------------------------CCATTTTG--------T-CCA--------------------------------------TAAAAGAG----TTTGGGATTACAGAAAATCCCAAAGGGGA-------------------GTCTCACAGGAAGGTGGTGCTCAGGTAGGACATGA-GGCTAGAAATGTAAATCTGGGTCTAAAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       621078 169 -   2910086 TGAGAGGACCT-----GGTAGAAGTTACA--AGGGAAGCCA----ATTTCACTGTAAGATGAAAAAGC----------------------------------------CCATTTTG--------T-CCA--------------------------------------CAAAAGAG----TTTGGGATTACAGAAAATCCCAAAGGGTA-------------------GTCTCACAGGAAGGTGGTGCTCAGGTAGGACATGA-GGCTAGAAAGGTAAATCTGGGTCTAAAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40649169 167 +  42888418 TGAGAGGACCT-----GGCAGAAGTTACA--AGGGGAGCCA----ATTTCACTGTAAAATGAAAAAGC----------------------------------------CCATTTTG--------T-CCA--------------------------------------C--AAGAG----TTTGGGATTACAGGAAATCCCAAAGGGGA-------------------GTCTCACAGGAAGGTGGTGCTCAGGTAGGACATGA-GGCTAGAAAGGTGAATCTGGGTCTAAAG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113272740 169 + 116334831 TGAGAGGGCCT-----AGCAGAAGTTACC--AGAGGAGCCA----ATTTCATTACAAGATGAAAAAGC----------------------------------------CTATTTTT--------CAACA--------------------------------------CAGTAGAA----TTTGGGGTTACAGGACATCCCAAA-AAGG-------------------GCCCCACAGGAAGGTGGAGCTCAGGTAGCACATGA-GGCTAGAGGAGTGAATTTGGGTCTAAAG
i micMur3.chr9              C 0 I 202
s proCoq1.NW_012142813v1        17818 169 +     80520 TGAGAGGGCCT-----GGCAGAGGTTACC--AGGGGAGCCA----ATTTCACTACAAGATGAAAAAGC----------------------------------------CTATTTTC--------C-ACA--------------------------------------CAGAAGAA----TTTGGGGTTACAGGACATCCCAAAGGAGG-------------------GCCCCACAGGAAGGTGGAGCTCAGGTAGCACATGA-GGCTAGAAGAGTGAATGTGGGTCTAAAG
i proCoq1.NW_012142813v1    I 29 C 0
s otoGar3.GL873530             635433 165 -  36342412 TAAGAAGGCCT-----GACAGAAGTTTTG--GTGGGTGCCA----ATTTCACCAGAAGATGAAAAAGC----------------------------------------TTATTTTA--------C-ACA--------------------------------------CCGAAGAG----TTTGGGACTAT-GGACATTCCAAAGGAGG-------------------GCCC--CTGGAAGTTGGCACTCAGACAGCATAGGA-GACTAGGGGAGTACATG-AGGTCTAATG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81352922 186 + 145441459 AGAAAGTGCTCGGGGAGGCAGCAGCTGCA----------CA----GACTCGATGAGAGA---GAAAGA----------------------------------------CTGCTCTG--------C-ACA--------------------------------------TGGGGCAGTCGATCTGCAGTTACAGGATATATCACAGAATGTCTGCAGTTACAGGATCACATACCACA-GAATATAGGGCCTAGGGAGGACAGGTTAGTTAGACTGGAGAATCTGGGTCTAAAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54410999 257 +  91889043 TGAGCA---CT-----GATGGCACTTTTG-GAGGGAAGACAGCTCATTTCATGGAAAGATGAACGTGCATTTTTTTCTTCTTCCATGGAACCGCATGAAGAAGTATCACCATCTTGGTCCACACC-CCAGGGGCCAGCAAGCTTTCCAAGCTTTTTCCTACACTAAGCACAAGAA----TCTAGGATCATGGAACATCCCCAAGAAAG-------------------GCCCCACAAGAAGGTGAGGCTCCATGAGGATAGGA-GACTACAGAGGTGACTGTAGGTCCAGAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1801270 165 +   3943991 TGAGAAGGCCT-----GGCAGAAGTTACCA-GGGGGAGCCA----ATTCCACTG-AAGATGAAAAAGC----------------------------------------CCATTTTA--------T-ATA--------------------------------------CAGAAGAG----TTTGGGAATACAGGACATCCCAAAAG----------------------GCCCTAAAGGAACATGGGGCTCAGG-AGGATATGA-GGCTAGAAAGTTGAGTCTGGGTTTGAAG
i dasNov3.JH570731          C 0 C 0

a score=87467.000000
s hg38.chr15_KI270850v1_alt    339837 7 +    430880 GTGAGAG
s panTro5.chr15              63493227 7 +  83230942 GTGAGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80450361 7 +  99763055 GTGAGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        50518 7 -   1709092 GTGAGAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17202281 7 - 121039945 GTGAGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60890891 7 + 169600520 ATGAAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108417647 7 - 171882078 ATGAGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        28089 7 -   2311642 ATGAGAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        26247 7 -   1987038 ATGAGAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21106783 7 -  24206276 ATGAGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        21973 7 -   1397330 ATGAGAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        45274 7 -   1784207 ATGAGAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22241823 7 + 158406734 TTGAGAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50477627 7 +  54856640 TTGAGAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       621247 7 -   2910086 TTGAGAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40649336 7 +  42888418 TTGAGAG
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        17987 7 +     80520 GTAAGAG
i proCoq1.NW_012142813v1    C 0 I 459
s otoGar3.GL873530             635598 6 -  36342412 GT-AGAG
i otoGar3.GL873530          C 0 I 2
s mm10.chr7                  81353108 4 + 145441459 ---ACAG
i mm10.chr7                 C 0 I 3
s canFam3.chr3               54411256 7 +  91889043 GTGAGAG
i canFam3.chr3              C 0 I 2
s dasNov3.JH570731            1801435 7 +   3943991 GCAAGAG
i dasNov3.JH570731          C 0 I 2
e micMur3.chr9              113272909 202 + 116334831 I

a score=2058311.000000
s hg38.chr15_KI270850v1_alt    339844 206 +    430880 AAGCCAC-AAAG--TGAGTCATTTATCTGAACTAGAAAAGAAGA----AGGGAGTCAAAGATTGGCTATATTGGCTATGTTGGTGCTGGCGGGG---AGAGG---AACACAAAGGA-----AAAAGAAAAGTAGAGAGGAAGGAGAACTGCATCAGCCTATAGCCAGTGAATCAAAGAAAGATT--AAATCCCTGTAAGGTGATG-GGAGGGAATGGGAGACAGGAT
s panTro5.chr15              63493234 193 +  83230942 AAGCCAC-AAAG--TGAGTCATTTATCTGAACTAGAAACGAAGA----GGGGAGTCAAAGATTGGCTATATTGGC---------GCTGGCGGGG---AGAGG---AACACAAAGGA-----AAAAGAA-----GAGAGGAAGGAGAACTGCATCAGCCTGTAGCCCGTGAATCAAAGAAAGATT--AAATCCCTGTAAGGTGATGAGGAGGGAATGGGAGACAGGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80450368 202 +  99763055 AAGCCAC-AAAG--TGAGTCATTTATCTGAACTAGAAACGAAGA----AGGGAGTCAAAGATTGGCTATATTGGCTATATTGGTGCTGGCGGGG---AGAGG---AACACAAAGGA-----AAAAGAA-----GAGAGGAAGGAGAACTGCATCAGCCTGTAGCCAGTGAATCAAAGAAAGATT--AAATCCCTGTAAGGTGATGAGGAGGGAATGGGAGACAGGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        50525 207 -   1709092 AAGCCAC-AAAG--TGAGTCATTTATCTGAACTAGAAAAGAAGA----AGGGAGTCAAAGATTGGCTATATTGGCTATATTGGTGCTGGCGGGG---AGAGG---AACACAAAGGA-----AAAAGAAAAGTAGAGAGGAAGGAGAACTGCATCAGCCTATAGCCAGTGAATCAAAGAAAGATT--AAATCCCTGTAAGGTGATGAGGAGGGAATGGGAGACAGGAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17202288 208 - 121039945 AAGCCATAAAAG--CGAGTCATTTATCTGAACTAGAAAAGAAGT----AGGGAGTCAAAGATTGGCTATATTGGCTATATTGGTGCTGGCGGGG---AGGGG---AACACAAACGA-----AAAAGAAAAGTAGAGAGTAAGGAGAACCGCATCAGCCTATAGCCAGTGAATGAAAGAAAGATT--AAATCCCTGTAAGGTGATGAGGAGGGAATGAGAGACAGGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60890898 198 + 169600520 GAGCCACAAAAG--TGAGTCATTTATCTGAACTAGAAAAGAAGATAGGAGGGAGTCAAAGATTGGCTATACTGGT---------GCTGGCGGGG---AGGGG---AACGCAAAGGA-----AAAAGTC----AGAGAGGAAGGAGAACCACATCAGCCTATAGCCAGTGAATCAAAGAAAGATT--AAATCCCTGT-AGGCGATGAGGAGGGAATGGGAGACAGGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108417654 198 - 171882078 GAGCCACAAAAG--TGAGTCATTTATCTGAACTAGAAAAGAAGATAGGAGGGAGTCAAAGATTGGCTATACTGGT---------GCTGGCGGGG---AGGGG---AACGCAAAGGA-----AAAAGTC----AGAGAGGAAGGAGAACCGCATCAGCCTATAGCCAGTGAATCAAAGAAAGATT--AAATCCCTGT-AGGCGATGAGGAGGGAATGGGAGACAGGAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        28096 198 -   2311642 GAGCCACAAAAG--TGAGTCATTTATCTGAACTAGAAAAGAAGATAGGAGGGAGTCAAAGATTGGCTATACTGGT---------GCTGGCGGGG---AGGGG---AACGCAAAGGA-----AAAAGTC----AGAGAGGAAGGAGAACCGCATCAGCCTATAGCCAGTGAATCAAAGAAAGATT--AAATCCCTGT-AGGCGATGAGGAGGGAATGGGAGACAGGAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        26254 198 -   1987038 GAGCCACAAAAG--TGAGTCATTTATCTGAACTAGAAAAGAAGATAGGAGGGAGTCAAAGATTGGCTATACTGGT---------GCTGGCGGGG---AGGGG---AACGCAAAGGA-----AAAAGTC----AGAGAGGAAGGAGAACCGCATCAGCCTATAGCCAGTGAATCAAAGAAAGATT--AAATCCCTGT-AGGCGATGAGGAGGGAATGGGAGACAGGAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21106790 198 -  24206276 GAGCCACAAAAG--TGAGTCATTTATCTGAACTAGAAAAGAAGATAGGAGGGAGTCAAAGATTGGCTATACTGGT---------GCTGGCGGGG---AGGGG---AACGCAAAGTA-----AAAAGTC----AGAGAGGAAGGAGAACCGCATCAGCCTATAGCCAGTGAATCAAAGAAAGATT--AAATCCCTGT-AGGCGATGAGGAGGGAATGAGAGACAGGAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        21980 198 -   1397330 GAGCCACAAAAG--TGAGTCATTTATCTGAACTAGAAAAGAAGATAGGAGGGAGTCAAAGATTGGCTATACTGGT---------GCTGGCGGGG---AGGGG---AACGCAAAGGA-----AAAAGTC----AGAGAGGAAGGAGAACCGCATCAGCCTATAGCCAGTGAATCAAAGAAAGATT--AAATCCCTGT-AGGCGATGAGGAGGGAATGGGAGACAGGAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        45281 203 -   1784207 GAGCCACAAAAG--TGAGTCATTTATCTGAACTAGAAAAGAAGATAGGAGGGAGTCAAAGATTGGCTATACTGGT---------GCTGGTGGGG---AGGGG---AACGCAAAGGAAAAAGAAAAGTC----AGAGAGGAAGGAGAACCGCATCAGCCTATAGCCAGTAAATCAAAGAAAGATT--AAATCCCTGT-AGGTGATGAGGAAGGAATGGGAGACAGGAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22241830 194 + 158406734 GAGCCACAAAAG--TGAGTCATTTAACTGAATTGGAAAAGAAGATAGGAGGGAGTCAAAGATTGACTATATTGGT---------GCTGGCAGGG---AAGGG---AACA------A-----AAAGGAA---AAGGGAGGAAGGAGAACTGAATCAGTCTATAACCAATGAATCAAAGCATGATT--AAATCCCTATAAGGTGATGAGGAGGGAATGGGAGACAGGAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50477634 200 +  54856640 GAGCCACAAAAG--TGAGTCATTTAACTGAAGTGGAAAAGAAGATAGGAGGGAGTCAAAGACTGACTATATTGGT---------GCTGGCAGGG---AGGGG---AATACAAAAGA-----AAAGTAA---AGGAGAGGAAGGAGAACTGAATCAGCCTATAACCAATGAATCGAAGCACGATT--AAATCCCTATAAGGTGATGAGGAGAAAATGGGAGACAGGAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       621254 199 -   2910086 GAGCCACAAAAG--TGAGTCATTTAACTGAAGTGGAAAAGAAGGTAGGAGGGAGTCAAAGACTGACTATATTGGT---------GCTGGCAGGG---AGGGG---AACACAAAGGA-----AAAGTAA---AAGAGAGGAAAGAGAACTGAATCAGCCTA-AACCAATGAATCAAAGCACGATT--AAATCCCTATAAGGTGATGAGGAGGAAATGGGAGACAGGAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40649343 200 +  42888418 GAGCCACAAAAG--TGAGTCATTTAACTAAATTGGAAAAGAAGATAGGAGGGAGTCAAAGATTGACTATATTGGT---------GCTGGCAGGG---AGGGG---AACACAAAGGA-----AAAGTAA---AAGAGAGGAAGGAGAACTGAATCAGCCTATAACCAATGAATCAAAGCACGATT--AAATCCCTATAAGGTGATGAGGAGGGAATGGGAGACAGGAT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             635606 142 -  36342412 GAGCCAC-AAAG--CGGATGA-TTATCTGAGATGGAA-----------------------------------------------GATGTCAGGG---AAGAGTCACACATGAAGGA-----AAGAGTC----TGAGGT----GGGGACCG---CGGCCTACAGCCAGTGAATCAAAGA-----T--AGGTCCCTGG--------AAGGAGGGACTGGGGAGTAGAAA
i otoGar3.GL873530          I 2 C 0
s mm10.chr7                  81353115 179 + 145441459 -AACCAC-AAAA--TGAAAAAATTGTCTGAGAGAGAAAAGATGACAAGAGGAAGTCAAATGTCG----TATTGAT---------GATGG-----------AG---AACACAGTTTG-----GACATGCTGTCAGTGAAGTGAGAGGACTGGG-------GGAGCTGGGGCATCAGAGAGACACT--CAGTTTCTG--AGGCGATAAGGAGGG-CTGGGAGGTGGGAA
i mm10.chr7                 I 3 C 0
s canFam3.chr3               54411265 190 +  91889043 GAGCCATAGGAG--CAAGTGATCTAAGTTGACGAGGAGAGAAGAGAAGAGGGAGTCAGATCCTGGCTGCCCTGGT------------GGCAGGG---AGGGG----ACCCAAGGAG-----AGAGGAG--TCTGAGAGGAAGGAGAACCAGG-------ACAGTCAGTGCATCAAAGACAGACTGGGAATCACTGCAAGGTGATAAGG--GGAACAGGAAACTGGGA
i canFam3.chr3              I 2 C 0
s dasNov3.JH570731            1801444 204 +   3943991 GAGCCACAAAAGCACAAATAATTTATCTGAGATTGGAAAGGAGA--GAAAAACGTCAAGTACTGGCTATACTGAT---------GGTGGCAGGGGGCAGGGT---GAAACAAAGGA-----AATAGAG--TCAGAGCAGTAGAAGAACCAGGACAACCTACAGCCGATGAAACAAAGATAGATT--AAAGCACTGCAAGGTGATGAGGAGGGAATGGGACTCAGGCA
i dasNov3.JH570731          I 2 C 0
e micMur3.chr9              113272909 202 + 116334831 I
e proCoq1.NW_012142813v1        17994 459 +     80520 I

a score=308023.000000
s hg38.chr15_KI270850v1_alt    340050 26 +    430880 GGTGTCTACAGGGGCACT-----GAGGAGGA
s panTro5.chr15              63493427 23 +  83230942 GGTGTCTACAGGGGCACT-----GAGGA---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80450570 23 +  99763055 GGTGTCTACAGGGGCACT-----GAGGA---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        50732 23 -   1709092 GGTGTCTACAGGGGCACT-----GAGGA---
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17202496 22 - 121039945 AGTGTCTACA-GGGCACT-----GAGGA---
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60891096 23 + 169600520 GGTGTCAACAGGGGCACT-----GAGGA---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108417852 23 - 171882078 GGTGTCAACAGGGGCACT-----GAGGA---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        28294 23 -   2311642 GGTGTCAACAGGGGCACT-----GAGGA---
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        26452 23 -   1987038 GGTGTCAACAGGGGCACT-----GAGGA---
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21106988 23 -  24206276 GGTGTCAACAGGGGCACT-----GAGGA---
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        22178 23 -   1397330 GGTGTCAACAGGGGCACT-----GAGGA---
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        45484 23 -   1784207 GGTGTCAACAGGGGCACT-----GAGGA---
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22242024 23 + 158406734 GGTGTCAAAAGGGGCACT-----GAGGA---
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50477834 23 +  54856640 GGTGTCAACAGGGGCACT-----GAGGA---
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       621453 23 -   2910086 GGTGTCAACAGGGGCACT-----GAGGA---
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40649543 23 +  42888418 GGTGTCAACAGGGGCACT-----GAGGA---
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113273111 23 + 116334831 GGTGTCCACAGGGGCACT-----GAGGA---
i micMur3.chr9              I 202 I 237
s otoGar3.GL873530             635748 23 -  36342412 GGTGCC-----AGGCACTTCCCAGAGGA---
i otoGar3.GL873530          C 0 I 3
s mm10.chr7                  81353294 21 + 145441459 GGTATGACCA-AGGCA-T-----GAGCA---
i mm10.chr7                 C 0 I 3
s canFam3.chr3               54411455 23 +  91889043 GGTGCCAGCAGGAGCACT-----GAGGT---
i canFam3.chr3              C 0 I 2
s dasNov3.JH570731            1801648 22 +   3943991 GGTATCAGCAGGGGCCCA-----AAGA----
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        17994 459 +     80520 I

a score=2319576.000000
s hg38.chr15_KI270850v1_alt    340076 208 +    430880 AGGGGAAGGGCTCTGTGATATGCATATGGCCATCTCTGGTTGTGAAAGCAGGAG----G-GGAGGAAAAAGGAGCATGTTAATTAAGTCCTAGAACA--TACTAAGGTGGGAAGACTACACAAGCTCCAGAGAA-TAAAGAAGCAGAGAAGGTAGGGAAGCTGTGGGTCACTGTGGGCAGCCAGAGGATGAGC-CTGCCCTCTCTCTAACACAGAAC
s panTro5.chr15              63493450 208 +  83230942 AGGGGAAGGGCTCTGTGATATGCATATGGCCATCTCTGGTTGTGAAAGCAGGAG----G-GGAGGAAAAAGGAGCATGTTAATTAAGTCCTAGAACA--TACTAAGGTGGGAAGACTACACGAGCTCCAGAGAG-TAAAGAAGCAGAGAAGGTAGGGAAGCTGTGTGTCACTGTGGGCAGCCAGAGGATGAGC-CTGCCCTCTCACTAACGCAGAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80450593 208 +  99763055 AGGGGAAGGGCTCTGTGATATGCATATGGCCATCTCTGGTTGTGAAAGCAGGAG----G-GGAGGAAAAAGGAGCATGTTAATTAAGTCCTAGAACA--TACTAAGGTGGGAAGACTACACAAGCTCCAGAGAG-TAAAGAAGCAGAGAAGGTAGGGAAGCTGTGTGTCACTGTGGGCAGCCAGAGGATGAGC-CTGCCCTCTCACTAACGCAGAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        50755 208 -   1709092 AGGGGAAGGGCTCTGTGATATGCATATGGCCATCTCTGGTTGTGAAAGCAGGAG----G-GGAGGAAAAAGGAGCATGTTAATTAAGTCCTAGAACA--TACTAAGGTGGGAAGACTACACAAGCTCCAGAGAG-TAAAGAAGCAGAGAAGGTAGGGAAGCTGTGGGTCACTGTGGGCAGCCAGAGGATGAGC-CTGCCCTCTCACTAACGCAGAAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17202518 208 - 121039945 AGGGGAAGGGCTCTGTGATATGCACATGGCCATCTCTGGTTGTGAAAGCAGGAG----G-GGAGGAAAAAGGAGCATGTTAATTAAGTCCTAGAACA--TACTAAGGTGGGAAGACTACACAAGCTCCACACAG-TAAGGAAGCAGAGAAGGTAGGGAAGCTGTGGGTCACTGTGGGCAGCCAGAGGACGAGC-CTGCCCTCTCACTAACGCAGAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60891119 207 + 169600520 AGGGGAGGGGCTCTGTGATATGCATATGGCCATCTCTGGTTGTGAAAGCAGGAG----G-GGAGG---AAGGAGCATGTTAAGTAAGTCCTAGAACATTTACTAAGGTGAGATGACTACACAAGCTCCACACAG-TAAGGAAGCAGATAAGGTACAGAAGCTGTGGGTCACTGTGGGTAGCCAGAGGACGAGC-CTGCCCTCTCAATAACGCAGAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108417875 207 - 171882078 AGGGGAGGGGCTCTGTGATATGCATATGGCCATCTCTGGTTGTGAAAGCAGGAG----G-GGAGG---AAGGAGCATGTTAAGTAAGTCCTAGAACATTTACTAAGGTGAGATGACTATACAAGCTCCACACAG-TAAGGAAGCAGATAAGGTACAGAAGCTGTGGGTCACTGTGGGTAGCCAGAGGACGAGC-CTGCCCTCTCAATAACGCAGAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        28317 207 -   2311642 AGGGGAGGGGCTCTGTGATATGCATATGGCCATCTCTGGTTGTGAAAGCAGGAG----G-GGAGG---AAGGAGCATGTTAAGTAAGTCCTAGAACATTTACTAAGGTGAGATGACTACACAAGCTCCACACAG-TAAGGAAGCAGATAAGGTACAGAAGCTGTGGGTCACTGTGGGTAGCCAGAGGACGAGC-CTGCCCTCTCAATAATGCAGAAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        26475 207 -   1987038 AGGGGAGGGGCTCTGTGATATGCATATGGCCATCTCTGGTTGTGAAAGCAGGAG----G-GGAGG---AAGGAGCATGTTAAGTAAGTCCTAGAACATTTACTAAGGTGAGATGACTACACAAGCTCCACACAG-TAAGGAAGCAGAGAAGGTACAGAAGCTGTGGGTCACTGTGGGTAGCCAGAGGACGAGC-CTGCCCTCTCAATAACGCAGAAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21107011 207 -  24206276 AGGGAAGGGGCTCTGTGATATGCTTATGGCCATCTCTGGTTGTGAAAGCAGGAG----G-GGAGG---AAGGAGCATGTTAAGTAAGTCCTAGAACATTTACTAAGGTGAGATGACTACACAAGCTCCACACAG-TAAGGAAGCAGAGAAGGTACAGAAGTTGTGGGTCACTGTGGGTAGCCAGAGGACGAGC-CTGCCCTCTCAAGAACGCAGAAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        22201 207 -   1397330 AGGGGAGGGGCTCTGTGATATGCATATGGCCATCTCTGGTTGTGAAAGCAGGAG----G-GGAGC---AAGGAGCATGTTAAGTAAGTCCTAGAACATTTACTAAGGTGAGATGACTACACAAGCTCCACACAG-TAAGGAAGCAGAGAAGGTACAGAAGCTGTGGGTCACTGTGGGTAGCCAGAGGACGAGC-CTGCCCTCTCAATAACGCAGAAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        45507 207 -   1784207 AGGGGAGGGGCTTTGTGATATGCATATGGCCATCTCTGGTTGTGAAAGCAGGAG----G-GGAGG---AAGGAGCATGTTAAGTAAGTCCTAGAACATTTACTAAGGCGAGATGACTACACAAGCTCCACACAG-TAAGGAAGCAGAGAAGGTAGAAAAGCTGTGGGTCACTGTGGGTAGCCAGAGGACGAGC-CTGCCCTCTCAATAATGCAGAAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22242047 206 + 158406734 A--GGAGGGGCTCTGTGATACGCATATGGCCATCTCTAGTCGTGAAAGCAGGAG----G-GGAGGAAGGAGGAGCATGTTGAATAAGTCCTAGAACA--TACTAAGGTGGGATGATTGCACAAGCTCCACACAG-TAAGGAAGCAGAGAAGGTAGGGAAGCTGTGGGTCATTGTGGGAAACTGGAAGATGAGC-CTGCCCTCTCACTCATGCAGAAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50477857 205 +  54856640 AGGGGAGGGGCTCTGTGATATGCATATGGCCATCTCTGGTTGTGAAAGCAGGAG----G-GGAGGAAGGAGGAGCATGTTAAGTCAGTCCTAGAACA--TACTAAGGTGGGATGACTGCACAAGCTCCACATAGTTAAGGAAGCAGGTAAGGTAGGGAAGCTGTGGGTCATTGCGGGAAACTGGAAGATGAGC-CTGCCCTCTCAA----GCAGAAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       621476 208 -   2910086 AGGGGAGGGGCTCTGTGATATGCATATGGCCATCTCTGGTTGTGAAAGCAGGAG----G-GGAGGAAGAAGGAGCATGTTAAGTAAGTCCTAGAACA--TACTAAGGTGGGATGACTGCCCAAGCTCCACACAG-TAAGGAAGCAGAGAAGGTAGGGAAGCTGTGGGTCATTGTGGGAAACTGGAAGATGAGC-CTGCCCTCTCACTCAAGCAGAAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40649566 208 +  42888418 AGGGGAGGGACTCTGTGATATGCATATGGCCATCTCTGGTTGTGAAATCAGGAG----G-GGAGGAAGGAAGAGCATGTTAAGTAAGTCCTAGAACA--TACTAAGTTGGAATGACTGCACAAGCTCCACACAG-TAAGGAAACAGAGAAGGTAGGGAAGCTGTGGGTCATTGTGGCAAACTGGAAAATGAAC-CTGCCCTCTCACTCATACAGAAC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             635774 204 -  36342412 GGAAGAAAGGCTCTATGCTATAGACAGGGCAGCCTCTGACTGTGAAGGGGTGAG----GAGGAGGGAGCATGAGCATATCAACTAAGTTTTAGAAT---TAACACCCTGAGATAACCG-GTGAGCTCCACACAG-CAAGAAAGGTGAGAATGTAGGAAAGCTGTGGA----GATGAACAGCCAGAAGATGAACTCTGCCCTGTCACTAAGACAGAAC
i otoGar3.GL873530          I 3 I 32
s mm10.chr7                  81353318 152 + 145441459 -------TGGC--TGTCCTGTAGCTATGCCAGTCTCAAG-TGTGAAAGCAGGGGACAAG-GGAGG---AAAGAGTAGATGATGTAA-TCTTAGC-----TAC----ATGAGTTGCTTGAACAAGAGAAACATGG-TGGGGGGG-------------------------------AGGGGGCGGGGGGAAGCGT-CTAT-------AAAGCACAGAA-
i mm10.chr7                 I 3 C 0
s canFam3.chr3               54411480 201 +  91889043 ---GCCAGGGGTCTGTGGTACGGCCACGGCAGTTGCTCACCATGAATGCAGGGG----A-CAGGGACAATGGAACACATTAACCAAGTCCTAAAGGG--TAACAAGGTGGGAGAACTGCATGAGCCCCACACAG-TGAGAAAG---GCCAGCTAGCAGTGCCGAGGGTCACTGTGGGCAGCTGGGAGACAAAC-TCACCCTG-CACTATGACAGAAT
i canFam3.chr3              I 2 I 32
s dasNov3.JH570731            1801670 201 +   3943991 AGGCGAGAGGATCTAGGGT------ATTGCAGTCTCTCATTGTGAAAGCAGGTG----G-CAGGGGAGAAAGAGCATAATAAATAAATTCCAGAAGA--TAATAAGGTGGGATATAACCATGTGCTCCACGTGG-TGAGAAAGGAGAGAAGGCAGGGAAGCTGTGGGTCACCATGGACAGCGAGAAGATGAAC-TTACCCT-TCACTAAGACAGAAT
i dasNov3.JH570731          C 0 I 32
e micMur3.chr9              113273134 237 + 116334831 I
e proCoq1.NW_012142813v1        17994 459 +     80520 I

a score=1097192.000000
s hg38.chr15_KI270850v1_alt    340284 68 +    430880 AAGAGCCAGCTTTGTTACATGGA---TT--------TATTTTAAATCTAATGTGACCATCCCAATAAAATAGGCATTTC
s panTro5.chr15              63493658 68 +  83230942 AAGAGCCAGCTTTGTTACATGGA---TT--------TATTTTAAATCTAATGTGACCATCCCAATAAAATAGGCATTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80450801 68 +  99763055 AAGAGCCAGCTTTGTTACATGGA---TT--------TATTTTAAATCTAACGTGACCATCCCAATAAAATAGGCATTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        50963 68 -   1709092 AAGAACCAGCTTTGTTACATGGA---TT--------TATTTTAAATCTAACGTGACCATCCCAATAAAATAGGCATTTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17202726 68 - 121039945 AAGAGCCAGCTTTGTTATATGGA---TT--------TATTTTAAATCTAACGCAACCATCCCAATAAAATAGGCATTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60891326 68 + 169600520 AAGAGCCAGCTTTGTTACATGGA---TT--------TATTTTAAATCTAATGTGACCATCCCAATAAAATAGGCATTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108418082 68 - 171882078 AAGAGCCAGCTTTGTTACATGGA---TT--------TATTTTAAATCTAATGTGACCATCCCAATAAATTAGGCATTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        28524 68 -   2311642 AAGAGCCAGCTTTGTTACATGGA---TT--------TATTTTAAATCTAATGTGACCATCCCAATAAAATAGGCATTTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        26682 68 -   1987038 AAGAGCCAGCTTTGTTACATGGA---TT--------TATTTTAAATCTAATGTGACCATCTCAATAAAACAGGCATTTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21107218 68 -  24206276 AAGAGCCAGCTTTGTTACATGGA---TT--------TATTTTAAATCTAATGTGACCATCCCAATAAAATAGGCATTTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        22408 68 -   1397330 AAGAGCCAGCTTTGTTACATGGA---TT--------TATTTTAAATCTAATGTGACCATCTCAATAAAATAGGCATTTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        45714 68 -   1784207 AAGAGCCAGCTTTGTTACATGGA---TT--------TATTTTAAATCTAATGTGACCATCCCAATAAAATAGGCATTTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22242253 68 + 158406734 AAGAGCCAGCTTTGTTATATGGA---TT--------TATTTTAAATCTAATGTGATCATCTCAATAAAACAGGCATTTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50478062 68 +  54856640 AAGAGCCAGCTTTGTTACATGGA---TT--------TATTTTAAATCTAATGTGATCATCCCAATAAAACAGGCATTTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       621684 68 -   2910086 AAGAGCCAGCTTTGTTACATGGA---TT--------TATTTTAAATCTAATGTGATCATCCCAATAAAATAGGCATTTA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40649774 68 +  42888418 AAGAGCCAGCTTTGTTACATGGA---TT--------TATTTCAAATCTAATGTGATCATCCCAATAAAATAGGCATTTA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113273371 71 + 116334831 AAGAGCCAGCTTTGTTACATGGATTGTT--------TATTTTAAATCTAATGTGACTGGCCCAATAAAATAGGCATTTC
i micMur3.chr9              I 237 I 1033
s proCoq1.NW_012142813v1        18453 71 +     80520 AAGAGCCAGCTTTGTTACACGGATTATT--------TATTTTAAATATAATGTGACTTGCCCAATAAAATAGGCATTTT
i proCoq1.NW_012142813v1    I 459 C 0
s otoGar3.GL873530             636010 67 -  36342412 AAGAGCCAGCTTTGTTACAAAGA----T--------TATTCTAAATCTAATGCAACCGGCTCAATAAAATAGGCATGCC
i otoGar3.GL873530          I 32 C 0
s mm10.chr7                  81353470 54 + 145441459 ------CAGACTAGTCA-ATAAA---CT----------ATTTAAAAGTGGTGTGGCTGTCCTCAT-----CGGCATTTC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54411713 72 +  91889043 AAGAGCCAGCTTTGTTACTTGGC---TTATTTGTTGTATTTTAAATCCAATGTGACCGTCTCAA----GTAGTTTTTTT
i canFam3.chr3              I 32 C 0
s dasNov3.JH570731            1801903 64 +   3943991 AAGAGCCAGCTTTGTTAAATGGG----T--------TATTTTAAATCCAAGGTGACTATCCCAAT---ACAGGCATTTT
i dasNov3.JH570731          I 32 C 0

a score=32111.000000
s hg38.chr15_KI270850v1_alt    340352 3 +    430880 TCC
s panTro5.chr15              63493726 3 +  83230942 TCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80450869 3 +  99763055 TCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        51031 3 -   1709092 TCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17202794 3 - 121039945 TCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60891394 3 + 169600520 CCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108418150 3 - 171882078 CCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        28592 3 -   2311642 CCC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        26750 3 -   1987038 CCC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21107286 3 -  24206276 CCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        22476 3 -   1397330 CCC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        45782 3 -   1784207 CCC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22242321 3 + 158406734 CCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50478130 3 +  54856640 CCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       621752 3 -   2910086 CCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40649842 3 +  42888418 CCA
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        18524 3 +     80520 TCC
i proCoq1.NW_012142813v1    C 0 I 580
s otoGar3.GL873530             636077 3 -  36342412 CCC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81353524 3 + 145441459 CCC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54411785 3 +  91889043 CCC
i canFam3.chr3              C 0 I 2
e micMur3.chr9              113273442 1033 + 116334831 I
e dasNov3.JH570731            1801967 0 +   3943991 C

a score=163977.000000
s hg38.chr15_KI270850v1_alt    340355 18 +    430880 -TCTTACCCTATAGA-Tt-tt
s panTro5.chr15              63493729 18 +  83230942 -TCTTACCCTATAGA-Tt-tt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80450872 18 +  99763055 -TCTTACCCTATAGA-Tt-tt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        51034 18 -   1709092 -TCTTACCCTATAGA-Tt-tt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17202797 18 - 121039945 -TCTTAACCTATGGA-Tt-tt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60891397 19 + 169600520 -TCTTACCTTATAGA-TTGtt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108418153 19 - 171882078 -TCTTACCTTATAGA-TTGtt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        28595 19 -   2311642 -TCTTACCTTATAGA-TTGtt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        26753 19 -   1987038 -TCTTACCTTATAGA-TTGtt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21107289 19 -  24206276 -TCTTACCTTATAGA-TTGtt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        22479 19 -   1397330 -TCTTACCTTATAGA-TTGtt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        45785 19 -   1784207 -TCTTACCCTATAGA-TTGtt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22242324 18 + 158406734 -TCTTACCCTACAGA-Tt-tt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50478133 18 +  54856640 -TCTTaccctataga-tt-tt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       621755 18 -   2910086 -TCTTaccctataga-tt-tt
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40649845 19 +  42888418 -TCTTACCCTACAGATTt-tt
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             636080 18 -  36342412 -CAATACCCTAAAGA-TT-TT
i otoGar3.GL873530          C 0 I 291
s mm10.chr7                  81353527 18 + 145441459 -CTTTAAGATACAAA-Tt-tt
i mm10.chr7                 C 0 I 21
s canFam3.chr3               54411790 18 +  91889043 -CTTTACCCTACAGA-tt-tt
i canFam3.chr3              I 2 I 13
s dasNov3.JH570731            1801967 10 +   3943991 AATTTCCCAT-----------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113273442 1033 + 116334831 I
e proCoq1.NW_012142813v1        18527 580 +     80520 I

a score=383847.000000
s hg38.chr15_KI270850v1_alt    340373 34 +    430880 tttagagaagctttaaggtttacagtaaatctga
s panTro5.chr15              63493747 34 +  83230942 tttagagaagctttaaggttcacagcaaatctga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80450890 34 +  99763055 tttagagaagctttaaggttcacagcaaatctga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        51052 34 -   1709092 tttagagaagctttaaggttcacagtaaatctga
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17202815 34 - 121039945 tttagagaagctttaaggttcacagtaaatctga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60891416 34 + 169600520 tttagagaagctttaaggttcacagtaaatctga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108418172 22 - 171882078 tttagagaagctttaaggttca------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        28614 34 -   2311642 tttagagaagctttaaggttcacagtaaatctga
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        26772 34 -   1987038 tttagagaagctttaaggttcacagtaaatctga
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21107308 34 -  24206276 tttagagaagctttaaggttcacagtaaatccga
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        22498 34 -   1397330 tttagagaagctttaaggttcacagtaaatctga
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        45804 34 -   1784207 tttagagaagctttaaggttcacagtaaatctga
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22242342 34 + 158406734 tttagcgaaactttaaggttcacagtaactctga
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50478151 34 +  54856640 tttagagaaattttaaggttcacagtaaatttga
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       621773 34 -   2910086 tttagataaactttaaggttcacagtaaatctga
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40649864 33 +  42888418 tttacagaaactttaagtttca-agtaaatctga
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             636389 33 -  36342412 ttcaaagcagtttt-agattcacaataaaactga
i otoGar3.GL873530          I 291 C 0
s mm10.chr7                  81353566 33 + 145441459 cttagagttgattttag-ttcacagtaaaaatgc
i mm10.chr7                 I 21 C 0
s canFam3.chr3               54411821 33 +  91889043 cctagagcagttttaag-ctcacagcaaaactga
i canFam3.chr3              I 13 C 0
s dasNov3.JH570731            1801977 32 +   3943991 TTCAGAGATG--TTAAAAATCGTCATAAAGGTGA
i dasNov3.JH570731          C 0 I 241
e micMur3.chr9              113273442 1033 + 116334831 I
e proCoq1.NW_012142813v1        18527 580 +     80520 I

a score=2286012.000000
s hg38.chr15_KI270850v1_alt    340407 208 +    430880 gcagaaagtacagggattctccaaatactctctgcccccacacttgcgt-gacttcccc-actatcaggatcccgcatgagagtggaacatttttt--------------tatactgacccatcatccccaccgaaagtccatggtttgcatcagagttcaatcct-ggtgtttcttttaccttctatgggtttggaccaaagtataatgacatgtatccaccat
s panTro5.chr15              63493781 208 +  83230942 gcagaaagtacagggattctccaaatactctctgcccccacacttgtgt-gacttcccc-actatcaggatcccgcatgagagtggaacatttttt--------------tatactgacccatcatccccacccaaagtccatggtttgcatcagagttcactcct-ggtgtttgttttaccttctatgggtttggaccaaagtataatgacatgtatccaccat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80450924 208 +  99763055 gcagaaagtacagggattctccaaatactctctgcccccacacttgtgt-gacttcccc-actatcaggatcccgcatgagagtggaacatttttt--------------tatactgacccatcatccccacccaaagtccatggtttgcatcagagttcactcct-ggtgtttgttttaccttctatgggtttggaccaaagtataatgacatgtatccaccat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        51086 208 -   1709092 gcagaaagtacagggattctccaaatactctctgcccccacacttgtgt-gacttcccc-actatcaggatcccgcatgagagtggaacatttttt--------------tatactgacccatcatcaccacccaaagtccatggtttgcatcagagttcactcct-ggtgtttgttttaccttctatgggtttggaccaaagtataatgacatgtatccatcat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17202849 208 - 121039945 gcagaaagtacagggactctccaaatactctctgcccccacacttgtgt-gacttctcc-actatcaggatcccgcatgagagtggaacatttttt--------------tatactgacacatcatcaacatccaaagtccatggtttgtatcagagttcactctt-ggtgtttgttttaccttctatgggtttggaccaaagtataatgacatgtatccaccat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60891450 208 + 169600520 gcagaaagtacggggatttcccaaatactctctgcccccacacttgtgt-gacttctcc-actatcaggatcccgcatgcgagtggaacatttgtt--------------tatactgacacatcatcaccactcaaagtccatggtttacatcagggttcactctt-ggtgtttgttttacattctatgggtttgaaccaaagtataatgacatgtatccaccat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108418194 207 - 171882078 -cagaaagtacggggatttcccaaatactctctgcccccacacttgtgt-gacttctcc-actatcaggatcccgcatgcgagtggaacatttgtt--------------tatactgacacatcatcaccactcaaagtccatggtttacatcagggttcactctt-ggtgtttgttttacattctatgggtttgaaccaaagtataatgacatatatccaccat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        28648 208 -   2311642 gcagaaagtacggggatttcccaaatactctctgcccccacacttgtgt-gacttctcc-actatcaggatcccgcatgcgagtggaacatttgtt--------------tatactgacacatcatcaccactcaaagtccatggtttacatcagggttcactctt-ggtgtttgttttacattctatgggtttgaaccaaagtataatgacatgtatccaccat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        26806 208 -   1987038 gcagaaagtacggggatttcccaaatactctctgcccccacacttgtgt-gacttctcc-actatcaggatctcgcatgcgagtggaacattcgtt--------------tatactcacacatcatcaccacccaaagtccatggtttacatcagggttcactctt-ggtgtttgttttacattctatgggtttgaaccaaagtataatgacatgtatccaccat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21107342 208 -  24206276 gcagaaagtacagggatttcccaaatactctctgcccccacacttgtgt-gacttctcc-actaccaggatcccgcatgcgagtggaacatttgtt--------------tatactgacacatcatcaccacccaaagtccatggtttacatcagggttcactctt-ggtgtctgttttacattctatgggtttgaaccaaagtataatgacatgtatccaccat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        22532 208 -   1397330 gcagaaagtacggggatttcccaaatactctctgcccccacacttgtgt-gacttctcc-actatcaggatcccgcatgcgagtggaacatttgtt--------------tatactgacacatcatcaccacccaaagtccatggtttacatcagggttcactctt-ggtgtttgttttacattctatgggtttgaaccaaagtataatgacatgtatccaccat
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        45838 209 -   1784207 gcagaaagtatagggatttcccaaatactctctgcccccacacttgtgt-gacttctcc-actatcaggatcccgcatgcaagtggaacatttgtt--------------tatactgacacatcatcaccacccaaagtccatggtttacatcagggttcactcttgggtgtttgttttacattctatgggtttgaaccaaagtataatgacatgtatccaccat
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22242376 220 + 158406734 gaagaaagtacagggattttccaaatactctctgctcccacacttgtgt-gacttcccc-actatcaggatcctgcatgacagtggaacatttgttatcactggtgcagttacactgacacatcaccaccacccaaaa-ccatggtttacatcagggttcactctt-ggtgtttgttttacattctat-ggtttggaccaaagtataatgacatgtatctaccat
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50478185 220 +  54856640 gcagaaagtacaggtattttccaaatactctctactcccacacttgtgt-gacttcccc-actatcaggatcctgcatgaaagtggaacatttgttagcactggtgcagctacactgacacatcatcaccacccaaaa-ccatggtttacatcagggttcactctt-ggtgtttgttttacattctat-ggtttggaccaaagtataatgacatgtatctaccat
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       621807 220 -   2910086 gcagaaagtacagggattttccaaatactctctgctcccacacgtgtgt-gacttcccc-actatcaggatcctgcatgagagtggaacatttgttagcactggtgcagctacactgatacatcaccaccacccaaaa-ccatggtttacatcagggttcactctt-ggtgtttgttttacattctat-ggtttgcaccaaagtataatgacatgtatctaccat
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40649897 220 +  42888418 gcagcaagtacagggattttccaaatactctctgctcccacacttgtgt-gacttcccc-actatcaggatcctacatgagagtggatcatttgttatcactggtgcagctacactgacacatcaccaccacccaaaa-ccatggtttatatcagggttcactctt-ggtgtttgttttacattctat-ggtttggaccaaagtacaatgacgtgtatctaccat
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             636422 223 -  36342412 gcataagaaacaaagcttgcccacatggcccttgcccccacacatgcacagcctccccc-actaccaatgtctggcactgcagtggaccatttgttaaaactgatgagtctgcactgacatgttaccaccactcaaaatccaagcctgaccttagggtccactctt-gatacttgttttatgttctgtgggtctggacaaaggtacaacaacatgcaatcaccat
i otoGar3.GL873530          C 0 I 1
s mm10.chr7                  81353599 209 + 145441459 acaaaa---accaacagtctccgcatagtgcacccccccaaacacacaa-gccccctca-actagcaacattctgctaaaaact---ctgtgtgttctggctgatgaccccatgctgata-atccccatctcctcaaa-ccagagtctgcactgggttt---tctt-cacgtctgctgcacat--tactgggttagaggaatgagtgatgattttgtaacactgc
i mm10.chr7                 C 0 I 1
s canFam3.chr3               54411854 217 +  91889043 gctcaaagtacaggg---tgccatgttccccctgccccagtgcatgcac-ggcctcccctactattaacatccc-catcccagtggttcctgtgctatgatcactggacctataccaacacatcattaccacctcaagacaatggtttacctcaggctt-aatctt-gctgtgtgttgtacattctaagagttc-tacaaatgcgtaatgacatgatcccaccac
i canFam3.chr3              C 0 I 9
e micMur3.chr9              113273442 1033 + 116334831 I
e proCoq1.NW_012142813v1        18527 580 +     80520 I
e dasNov3.JH570731            1802009 241 +   3943991 I

a score=2252324.000000
s hg38.chr15_KI270850v1_alt    340615 206 +    430880 at----acagaata--gtttcactg--ccctaaaaatcctct-gtgctatgtctcttc---atcccttcctgcta---aacccctggcaaccactgatc-ttttttactaaaataggcatttta-gtttcccatcttatagaaGagaagaggaaacaaagtttcagaga-------tattaaatatctag-tccaatgtcacaAAAGTTGTGTGCTCTCAAATC----CGATTTT
s panTro5.chr15              63493989 206 +  83230942 at----acagaata--gtttcactg--ccctaaaaatcctct-gtgctatgtctcttc---atcccttcctgcta---aacccctggcaaccactgatc-tttttTACTAaaataggcatttta-gtttcccatcttatagaagagaagaggaaacaaagtttcagaga-------tattaaatatctag-tccaatgtcacaAAAGTTGTGTGCTCTCAAATC----CGATTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80451132 206 +  99763055 at----acagaata--gtttcactg--ccctaaaaatcctct-gtgctatgtctcttc---atcccttcctgcta---aacccctggcaaccactgatc-tttttTACTAaaataggcatttta-gtttcccatcttatagaagagaagaggaaacaaagtttcagaga-------tattaaatatctag-tccaatgtcacaAAAGTTGTGTGCTCTCAAATC----CGATTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        51294 207 -   1709092 at----acagaata--gtttcactg--ccctaaaaatcctct-gtgctatgtctcttc---atcccttcctgcta---aacccctggcaaccactgatctttttTTACTAaaataggcatttta-gtttcccatcttatagaagagaagaggaaacaaagtttcagaga-------tattaaatatctag-tccaatgtcacaAAAGTTGTGTGCTCTCAAATC----CGATTTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17203057 206 - 121039945 at----acagaata--gtttcactg--ccctaaaaatcctct-gtgctatgtctcttc---atcccttcctgcta---aacccctggcaaccactgatc-tttttTACTAaaataggcatttta-gtttcccattttatagaagagaagaggaaacaaagtttcagaga-------tattaaatatctag-tccaatgtcacaaaatttgtGTGCTCTCGAATC----TGATTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60891658 179 + 169600520 at----acagaata--gtttcactg-----------------------------attc---atcccttcatgcta---aacccctggcaatcactgatc--tttttactAaaataggcattttc-gtttcccattttatagaagagaagaggaaacaaagtttcagaga-------tattaaatgtctag-ttctatgtcacaAAAGTTGTGTGCTCTTGAATC----TGATTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108418401 179 - 171882078 at----acagaata--gtttcactg-----------------------------attc---atcccttcatgcta---aacccctggcaatcactgacc--tttttactAaaataggcattttc-gtttcccattttatagaagagaagaggaaacaaagtttcagaga-------tattaaatgtctag-tcctatgtcacaAAAGTTGTGTGCTCTTGAATC----TGATTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        28856 173 -   2311642 at----acagaata--gtttcactg-----------------------------attc---atcccttcatgcta---aacccctggcaatcactgatc--tttttactAaaataggcattttc-gtttcccattttatagaagagaagaggaaacaaagtttcagaga-------tattaaatgtctag-tcctatgtcacaAAAGTTGTGTGCTCTTGAATC----------T
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        27014 179 -   1987038 at----acagaata--gtttcactg-----------------------------attc---atcccttcatgcta---aacccctggcaatcactgatc--tttttactAaaataggcattttc-gtttcccattttatagaagagaagaggaaacaaagtttcagaga-------tattaaatgtctag-tcctatgtcacaAAAGTTGTGTGCTCTTGAATC----TGATTTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21107550 179 -  24206276 at----acagaata--gtttcactg-----------------------------attc---atcccttcatgcta---aacccctggcaatcactgatc--tttttactAaaataggcattttc-gtttctcattttatagaagagaagaggaaacaaagtttcagaga-------tattaaatgtctag-tcctgtgtcacaAAAGTTGTGTGCTCTTGAATC----TGATTTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        22740 179 -   1397330 at----acagaata--gtttcactg-----------------------------attc---atcccttcatgcta---aacccctggcaatcactgatc--tttttactAaaataggcattttc-gtttcccattttatagaagagaagaggaaacaaagtttcagaga-------tattaaatgtctag-tcctatgtcacaAAAGTTGTGTGCTCTTGAATC----TGATTTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        46047 179 -   1784207 at----acagaaca--gtttcactg-----------------------------attc---atcccttcatgcta---aacccctggcaatcactgatc--tttttactAaaataggcatttta-gtttcccattttatagaagagaagaggaaacaaagtttcagaga-------tattaaatatctag-tcctgtgtcacaAAAGTTGTGTGCTCTTGAATC----TGATTTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22242596 200 + 158406734 at----acagaata--gtttcaatg--ccctaaaaatcctct-gtgctatgcctattc---atcccttcctccta---aacccttatcgactactgttc--tttttactAaaataggcatttta-gtttcccattttat-----agaagaggaaacaaattttcagaga-------tattaaatatctaa-ttcaatctcacaAAAGCTGTGTACTCACAAATC----AGATTTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50478405 200 +  54856640 at----acagaata--gtttcactg--ccctaaaaatcctct-gtgctatgcctattc---atcccttcctgcta---aacccctggcaactactgatc--tttttactaaaataggcatttta-gtttcccattttat-----agaagaggaaacaaagtttcagaga-------tattaaataactag-ttcagtctcacaAAAGCTGTGTACTCCCAAATC----AGATTTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       622027 200 -   2910086 at----acagaata--gtttcactg--ccctaaaaatcctct-atgctatgcccattc---atcccttcctgcta---aacccctggcaactactgatc--tttttacaaaaataggcatttta-gtttcccattttat-----agaagaggaaacaaagtgttagaga-------tattaaatatctag-ttcagtctcacaAAAGCTGTGTACTCGCAAATC----AGATTTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40650117 200 +  42888418 at----acagaata--gtttcgctg--ccctaaaaatcctct-gtgctatgcctattc---atcccttcctgcta---aacccctggcaactactgatc--tttttactAaaataggcatttta-gtttcctattttat-----agaagaggaaacaacgtttcagaga-------tattaaatatctag-ttcaatctcacaAAAGCTGTGTACTCGCAAATC----AGATTTT
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        19107 200 +     80520 at----acagaaca--ctttcactg--ccctaaaaatccttt-gtgctgtgcctattc---atcccttcttgtta---aacccttggcaaccactgatc--tttttactAaaataggcatttta-gtttcccattttat-----agataaggaaatagagttttagaga-------tattaaatatctag-tccaatatcacaaaagtgatacactctagaatc----agatttt
i proCoq1.NW_012142813v1    I 580 I 4
s otoGar3.GL873530             636646 210 -  36342412 ac----acaggaca--gcttcactg--ccctagaaaccctctggtgctctgcctgctt---atgccttctcacta---aacccctggcaacgacggatc--tttttactgAAATAGACATTTTAGGTTTCCCACTTTAT-----AGGTAAGGAAATGAAGTTTTAGAGATACTATGTATTAGATATCTAGCCCCCAAATCACAAAAGTGATGTGCTCTAGAATT----GGATTTT
i otoGar3.GL873530          I 1 I 4
s mm10.chr7                  81353809 191 + 145441459 atggtagctgaatgtcatctcacagccccccaaaaatacttt-gtgctttgcttagtctgtttccct-------------cccctggaaagcactgatc--gttttaATTACAGATAT-TTTTG-GCTTCCTGTCTTAT-----AGAGGA-GCAATAAAATTTCAAAAT-------------------AG-TTTTATGTCACAAAAATGATGTTCTTTGGAATCATCCTAATAAG
i mm10.chr7                 I 1 C 0
s canFam3.chr3               54412080 201 +  91889043 ac----acaaagta--gtctcactg--ccctaaaaatccc---atgttccacctatgt---gtccctccctcctccataatccctggtaaccactgatc--tttttactaaaataggcatttca-agtccccattttat-----atatgaggaaatgatgtttcagata-------tattacatatctag-tccagtatcacaAAAGTGATATTCTCTGGAACC----CATtttt
i canFam3.chr3              I 9 I 146
e micMur3.chr9              113273442 1033 + 116334831 I
e dasNov3.JH570731            1802009 241 +   3943991 I

a score=671701.000000
s hg38.chr15_KI270850v1_alt    340821 50 +    430880 ------------------------------------------ACCACCGCACTGATTCCTGAGCTCAAAACTTGCTTTGACAagtggttctc
s panTro5.chr15              63494195 50 +  83230942 ------------------------------------------ACCACCGCACTGATTCCTGAGCTCAAAACTTGCTTTGACAagtggttctc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80451338 50 +  99763055 ------------------------------------------ACCACCGCACTGATTCCTGAGCTCAAAACTTGCTTTGACAagtggttctc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        51501 50 -   1709092 ------------------------------------------ACCACCGCACTGATTCCTGAGCTCAAAACTTGCTTTGACAagtggttctc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17203263 50 - 121039945 ------------------------------------------ACCACCACACTGATTCCTGAGCTCAAAACTTGCTTTGACAagtggttctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60891837 50 + 169600520 ------------------------------------------AACACCACACTGATTCCGGAGCTCAAAACTTGCTTTGACAagtgattctc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108418580 50 - 171882078 ------------------------------------------AACACCACACTGATTCCGGAGCTCAAAACTTGCTTTGACAagtgattctc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        29029 50 -   2311642 ------------------------------------------AACACCACACTGATTCCGGAGCTCAAAACTTGCTTTGACAagtgattctc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        27193 50 -   1987038 ------------------------------------------AACACCACACTGATTCCGGAGCTCAAAACTTGCTTTGACAagtgattctc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21107729 50 -  24206276 ------------------------------------------AACACCACACTGATTCCGGAGCTCAAAACTTGCTTTGACAagtgattctc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        22919 50 -   1397330 ------------------------------------------AACACCACACTGATTCCGGAGCTCAAAACTTGCTTTGACAagtgattctc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        46226 50 -   1784207 ------------------------------------------AACACCACACTGATTCCGGAGCTCAAAACTTGCTTTGACAagtgattctc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22242796 50 + 158406734 ------------------------------------------ACCACCACACTGATTCCTGAGTTCAAAACTTGCTTTGACAagtggttttt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50478605 50 +  54856640 ------------------------------------------ACCACCACACTGATTGCTGAGCTCAAAACTTGCTTTGAGAagtggttttc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       622227 50 -   2910086 ------------------------------------------ACCACCACACTGATTCCTGAGCTCAAAACTTGCTCTGACAagtggttttc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40650317 50 +  42888418 ------------------------------------------ACCACCACACTGATTGCTGAGCTCAAAACTTGCTTTGACAagtggttttc
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        19311 50 +     80520 ------------------------------------------AACACCGTACCAATTCCTGAGATCAAAACTTGCTTTGACAagtggttctc
i proCoq1.NW_012142813v1    I 4 C 0
s otoGar3.GL873530             636860 50 -  36342412 ------------------------------------------AACATCATTCTGATTTCTGAGATCAAAACTTGCTTTGACAagtggttctc
i otoGar3.GL873530          I 4 C 0
s mm10.chr7                  81354000 39 + 145441459 ------------------------------------------AATACTGTACCAATTTCTAAACTCAAAGC-----------AACGGTTCTC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54412427 91 +  91889043 accactgagccacccaggcgtcccATGAACCTGATTTTTAAAAAAACAATACTGATTCCTGAGTGCAAAACTTAA-CTGACAagtggttctc
i canFam3.chr3              I 146 C 0
e micMur3.chr9              113273442 1033 + 116334831 I
e dasNov3.JH570731            1802009 241 +   3943991 I

a score=2669930.000000
s hg38.chr15_KI270850v1_alt    340871 211 +    430880 aaacactacccactagaaccacct-ggggatctttattcagttggagattcctaaattccaccca-gagtgattcagtaagtctgggataaggccca--------------agaatgtgcaatgagatcccc--aggtgaGATAAACTC---GTTAGAGACCCATGCTGCCAAGGATA----CATAAGGCTGATATTAGAAAAAGCGTAGGAAGAGAGAATCTTAT-GGGGAAAACC
s panTro5.chr15              63494245 211 +  83230942 aaacactacccactagaaccacct-ggggatctttattcagttggagattcctaaattccaccca-gagtgattcagtaagtctgggataaggccca--------------agaatgtgcaatgagatcccc--aggtgaGATAAACTC---GTTAGAGACCCATGCTGCCAAGGATA----CATAAGGCTGATATTAGAAAAAGCGTAGGAAGAGAGAATCTTGT-GGGGAAAACC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80451388 211 +  99763055 aaacactacccactagaaccacct-ggggatctttattcagttggagattcctaaattccaccca-gagtgattcagtaagtctgggataaggccca--------------agaatgtgcaatgagatcccc--aggtgaGATAAACTC---GTTAGAGACCCATGCTGCCAAGGATA----CATAAGGCTGATATTAGAAAAAGCGTAGGAAGAGAGAATCTTGT-GGGGAAACCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        51551 211 -   1709092 aaacactacccactagaaccacct-ggggatctttattcagttggagattcctaaattccaccca-gagtgattcagtaagtctgggataaggccca--------------agaatgtgcaatgagatcccc--aggtgaGATAAACTC---GTTAGAGACCCATGCTGCCAAGGATA----CATAAGGCTGATATTAGAAAAAGCATAGGAAGAGAGAATCTTAT-GGGGAAAACC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17203313 211 - 121039945 aaacactatccactagaaccactt-ggggatctttgttcagttggagattcctaaattccaccta-gagtgattcagtaagtctgggataaggccca--------------agaatgtgcaatgagatgccc--aggtgaGATAAACTC---GTTAGAGACCCATGCTGCCAAGGATA----CATAACGCTGATATTAGAAAAGGCATAGGAAGAGAGAATCTTTT-GGGGAAAACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60891887 211 + 169600520 aaacactatccactagatccactt-ggggatctttgttcagttggagattcctaaattccaccca-gagtgattcagtaagtctgggataaggccca--------------agaatgagcaatgagatcccc--aggtgaGATAAACTC---GTTAGAGACCCATGCTGCCAAGGATA----CATAAGGCTGATATTAGAAAAGACGTAGGAAGAGAGAATCTCAT-GGGGAAAACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108418630 211 - 171882078 aaacactatccactagatccactt-ggggatctttgttcagttggagattcctaaattccaccca-gagtgattcagtaagtctgggataaggccca--------------agaatgagcaatgagatcccc--aggtgaAATAAACTC---GTTAGAGACCCATGCTGCCAAGGATA----CATAAGGCTGATATTAGAAAAGACGTAGGAAGAGAGAATCTTAT-GGGGAAAACC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        29079 211 -   2311642 aaacactatccactagatccactt-ggggatctttgttcagttggagattcctaaattccaccca-gagtgattcagtaagtctgggataaggccca--------------agaatgagcaatgagatcccc--aggtgaGATAAACTC---GTTAGAGACCCATGCTGCCAAGGATA----CATAAGGCTGATATTAGAAAAGACGTAGGAAGAGAGAATCTTAT-GGGGAAAACC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        27243 211 -   1987038 acacactatccactagatccactt-ggggatctttgttcagttggagattcctaaattccaccca-gagtgattcagtaagtctgggataaggccca--------------agaatgtgcaatgagatcccc--aggtgaGATAAACTC---GTTAGAGACCCATGCTGCCAAGGATA----CATAAGGCTGATATTAGAAACGACGTAGGAAGAGGGAATCTTAT-GGGGAAAACC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21107779 212 -  24206276 aaacactatccattagatccacct-ggggatctttgttcagttggagattcttaaattccaccca-gagtgattcagtaagtctgggataaggccca--------------agaatgtgcaatgagatcccc--aggtgaGATAAACTC---GTTAGAGACCCATGCTGCCAAGGATA----CATAAGGCTGATATTAGAAAAGATGTAGGAAAAGAGAATCTTATGGGGGAAAACC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        22969 211 -   1397330 acacactatccactagatccactt-ggggatctttgttcagttggagattcctaaatcccaccca-gagtgattcagtaagtctgggataaggccca--------------agaatgtgcaatgagatcccc--aggtgaGATAAACTC---GTTAGAGACCCATGCTGCCAAGGATA----CATAAGGCTGATATTAGAAAAGACGTAGGAAGAGAGAATCTTAT-GGGGAAAACC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        46276 211 -   1784207 aaacactatccactagatccactt-ggggatctttgttcagttggagattcctaaattccaccca-gagtgattcagtaagtctgggataaggccca--------------agaatgtgcaatgagatcccc--aggtgaGATAAACTC---GTTAGAGACCCATGCTGCCAAGGATA----CATACGGCTGATATTAGAAAAGATGTAGGAAGAGAGAATCTTAT-GGGGAAAACC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22242846 214 + 158406734 aaacaccatccactaaaaccacta-ggggatctttgttcagttggagattcctaaattcccccca-gaatgattcagtaaatctggaataaggccca--------------agaatctgcaatgagatcccc--aggtgaGATAAACTCCATGTTAGAGACCCATGATGTCAAGGACA----CACAAGGCTGATATTAGAAAAGGCACAGGGAGAGAAAATCTTAT-GGGGAATAAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50478655 213 +  54856640 aaacaccatccactagaaccacca-ggggatctttgttcagttggagattcctaaattccaccca-gaatgactcagtaaatctggaataaggccca--------------agaatctgcaatgagatcccc--aggtgaCATAAACTCTACATTAGAGACCCATGATGCCAACGACA----CATAAGGCTGATACTAGAAAAGGCACAGGAAGAAAAAATCTTA--GGGGAATAAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       622277 214 -   2910086 aaacaccatccactagacccacta-ggggatctttgctcagttggagattcctaaattccaccca-gaatgatccagtaaatctggaataaggccca--------------agaatctgcaatgagatcccc--aggtgaGATAAACTCCACGTTAGAGACCCATGATGCCAACGACA----CACAAGGCTGATATTAGAAAAGGCACAGGAAGAGAAAATCTTAT-GGGGAATAAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40650367 215 +  42888418 aaacaccatccactagaaccactagggggatctttgttcagttggagattcctaaattccaccca-gaatgattcagtaaatctggaataaggccca--------------agaatctgcaatgagatcccc--aggtgaGATAAACTCCACGTTAGAGACCCATGATGCCAAGGACA----CACAAGGCTGATATTAGAAAAGGCACAGGAAGAGAAAATCTTAT-GGGGAATAAC
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        19361 206 +     80520 aaacattatccactagaaccacct--ggagtgcttggttaagtggagattcctaacctccaccca-gac--attcagtaaatgtgggataaggccca--------------agaatctgcaatgaggtcccc--aggtgaGAT-AACTCCATATTAGAAACACCTGATGCCAAGGACA----CAC-AGGCCGATACCAGAAA--GTGTAAGA-GAGAGAATCATAT-GGAGAAAACC
i proCoq1.NW_012142813v1    C 0 I 44
s otoGar3.GL873530             636910 212 -  36342412 aaacactatcctctagaaccacttggggggtgctggttaaagtggcaatttctgaactccactca-gac--actcggtttacatgggataaggacca--------------aaaacctgtagtaaggctccc--aggtgaGAT-AACTCCATGCTAGAAACCCATAATGCTAGGGACA----CACAAGGCTGATCCCAGAAAAGGTATAAGATGAAAAACTTACGT-GCAGAAAACT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81354039 171 + 145441459 AAAC-----------TATCCAGTT-GAGAAGCCTGATTAAA--AGAGATTCCTAAACTCCCCACACAAATGATTCAGTAA------------GCCTA--------------AAAATCTGCAGTGAGGTCCCCCAATGTGAAATCAATGT----------------GCTATCCAGGACA----CACCA-GCTTCTGTCA-AGAACGTTTAGAGAG---GTATCATAC-TGACAGAGCT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54412518 207 +  91889043 aaacatcatccatgagaaccattt-gg----------------ggagattcttaaGTTCCTCCCA-AACGGAC-CAGTAACTCTGAGACAGGACCCAGCAGCAGCCTTGACAGCACCAGCAGTGAGGGTCGC--AGGTGCAGGAACTGT---GCTAGAGATCCC--ATACTAAGGGCACGGTCACAAGGCCAGTGGTGGAAAAGGCTTAAGGAGAGAGAAACATGA-AGGAACA---
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1802250 198 +   3943991 AAACACTATCC-CTAGAAC--ACT-GTGAAACTTGGTAAAAGTGGAGATTCCTGAG-TATACTCA-GAA--------CATGCCTGGGATA-GGCCCA--------------GGATTCTGCAATGAGGTCCCC--AGGTACAGT-AACTCTATGCTTGAGACCCAAGATGCCAAGGGCA----CACAAGGCTGACACTGGAAAAAGCATATGGAGAGAAAATCATAT-GGGAAAAC--
i dasNov3.JH570731          I 241 C 0
e micMur3.chr9              113273442 1033 + 116334831 I

a score=521677.000000
s hg38.chr15_KI270850v1_alt    341082 48 +    430880 CACAAAACTAAATAAAGCCCTGAATAAGAATGAAGAAGTGAC-------CCACAG
s panTro5.chr15              63494456 48 +  83230942 CACAAAACTAAATAAAGCCCTGAATAAGAATGAAGAAGTGAC-------CCACAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80451599 48 +  99763055 CACAAAACTAAATAAAGCCCTGAATAAGAATGAAGAAGTGAC-------CCACAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        51762 48 -   1709092 CACAAAACTAAATAAAGCCCTGAATAAGAATGAAGAAGTGAC-------CCACAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17203524 48 - 121039945 CACAAAACTAAATAAAGCCCTGAATAAGAATGAAGAAGTGAC-------CCACAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60892098 46 + 169600520 CACAAAACTAA--AAAGCCCCGAATGAGAATGAAGAAGTGAC-------CCACAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108418841 48 - 171882078 CACAAAACTAAATAAAGCCCCGAATGAGAATGAAGAAGTGAC-------CCACAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        29290 48 -   2311642 CACAAAACTAAATAAAGCCCCGAATGAGAATGAAGAAGTGAC-------CCACAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        27454 48 -   1987038 CACAACACTAAATAAAGCCCCGAATGAGAATGAAGAAGTGAC-------CCACAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21107991 48 -  24206276 CACAAAACTAAATAAAGCCCCGAATGAGAAGGAAGAAGTGAC-------CCACAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        23180 48 -   1397330 CACAACACTAAATAAAGCCCCAAATGAGAATGAAGAAGTGAC-------CCACAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        46487 48 -   1784207 CACAAAACTAAATAAAGCCCCAAATGAGAATGAAGAAGTGAC-------CCACAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22243060 47 + 158406734 CACAAAACTGAATAAAGCCCTGAATGAGAATGAAG-AGTGAC-------CCACAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50478868 48 +  54856640 CACAAAACTAAATAAAGCCCTGAATGAGAATGAAGAAGTGAC-------CCACAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       622491 44 -   2910086 CACAAAAC----TAAAGCCCTGAATGAGAATGAAGAAGTGAC-------CCACAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40650582 48 +  42888418 CACAAAACTAAATAAAGCCCTGAATGAGAATGAAGAAGTGAC-------CCACAG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             637122 51 -  36342412 -ACATAACTCA-TAAAGTCTTGAA-AGGAGTGAAAGAGTGACACCCCCTCCCCA-
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81354210 42 + 145441459 -CTGAAACTAAGCAAGGCCCAGGA-GAGAGCGAAGCAG-----------CCACGG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54412725 44 +  91889043 CACAA---TAGACAAA-CCCTGAGTGGGAGTGAAGAGGTGAT-------CCATGG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1802448 34 +   3943991 TAGGTAACCAA--TAAATCCTGATGAAAACTGAAAA-------------------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113273442 1033 + 116334831 I
e proCoq1.NW_012142813v1        19567 44 +     80520 I

a score=2263271.000000
s hg38.chr15_KI270850v1_alt    341130 156 +    430880 GTGGGTGTGGGCTAAAGAG-GAATTCA-CCC-CCACAGACTGGGAGGTCACAAGGC---ACAG--GAAGGGCAGGACCAGGGAA--AAACAGCTGTAGG--TTTATCAGTTAAGTCCAAGTAGAGAAGTTTGCTGTTCTCAATTTCATTTCTAAGACAAGAGGTTTGA
s panTro5.chr15              63494504 156 +  83230942 GTGGGTGTGGGCTAAAGAG-GAATTCA-CCC-CCACAGACTGGGAGGTCACAAGGC---ACAG--GAAGGGCAGGACCAGGGAA--AAACAGCTGTAGG--TTTATCAGTTAAGTCCAAGTAGAGAAGTTTGCTGTTCTCAATTTCATTTCTAAGACAAGAGGTTTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80451647 155 +  99763055 GTGGGTGTGGGCTAAAGAG-GAATTCA-CCC-CCACAGACTGGGAGGTCACAAGGC---ACA---GAAGGGCAGGACCAGGGAA--AAACAGCTGTAGG--TTTATCAGTTAAGTCCAAGTAGAGAAGTTTGCTGTTCTCAATTTCATTTCTAAGACAAGAGGTTTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        51810 156 -   1709092 GTGGGTGTGGGTTAAAGAG-GAATTCA-CCC-CCACAGACTGGGAGGTCACAAGGC---ACAG--GAAGGGCAGGACCAGGGAA--AAACAGCTGTAGG--TTTATCAGTTAAGTCCAAGTAGAGAAGTTTGCTGTTCTCAATTTCATTTCTAAGACAAGAGGTTTGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17203572 156 - 121039945 GTGGGTGTGGGCTAAAGAG-GAATTCA-CCC-CTACAGACTGGGAGGTCACAAGGC---ACAG--GAAGGGCAGGCCCAGGGAA--AAACAGCTGTAGG--TTTATCAGTTAAGTCCAAGTAGAGAAGTTTGCTGTTCTCAATTTCATTTCTAAGACAAGAGGTTTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60892144 156 + 169600520 GTGGATGTGGGCTAAAGAG-GAATTCA-CCC-CCACAGACTGGGAGGTAAGAAGGC---ACAG--GAAGGGCAGGACCAGGGAA--AAACAGCTGTAGG--TTTATCAGTTAAGTACAAGTAGAGAAGTCTGCTGTTCTCAATTTCACTTCTAAGACAAGAGGTTTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108418889 156 - 171882078 GTGGATGTGGGCTAAAGAG-GAATTCA-CCC-TCACAGACTGGGAGGTAAGAAGGC---ACAG--GAAGGGCAGGACCAGGGAA--AAACAGCTGTAGG--TTTATCAGTTAAGTACAAGTAGAGAAGTCTGCTGTTCTCAATTTCAATTATAAGACAAGAGGTTTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        29338 156 -   2311642 GTGGATGTGGGCTAAAGAG-GAATTCA-CCC-CCACAGACTGGGAGGTAAGAAGGC---ACAG--GAAGGGCAGGACCAGGGAA--AAACAGCTGTAGG--TTTATCAGTTAAGTACAAGTAGAGAAGTCTGCTGTTCTCAATTTCAATTCTAAGACAAGAGGTTTAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        27502 156 -   1987038 GTGGATGTGGGCTAAAGAG-GAATTCA-CCC-CCACAGACTGGGAGGTAAGAAGGC---ACAG--GAAGGGCAGGACCAGGGAA--AAACAGCTGTAGG--TTTATCAGTTAAGTACAAGTAGAGAAGTCTGCTGTTCTCAATTTCAATTCTAAGACAAGAGGTTTAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21108039 156 -  24206276 GTGGGTGTGGGCTAAAGAG-CAATTCA-CCC-CCACAGACTGGGAGGTAAGAAGGG---ACAG--GAAGGGCAGGACCAGGGAA--AAACAGCTGTAGG--TTTATCAGTTAAGTACAAGTAGAGAAGTCTGCTGTTCTCAATTTCAATTCTAAGACAAGAGGTTTAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        23228 156 -   1397330 GTGGATGTGGGCTAAAGAG-GAATTCA-CCC-CCACAGACTGGGAGGTAAGAAGGC---ACAG--GAAGGGCAGGACCAGGGAA--AAACAGCTGTAGG--TTTATCAGTTAAGTACAAGTAGAGAAGTCTGCTGTTCTCAATTTCAATTCTAAGACAAGAGGTTTAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        46535 155 -   1784207 GTGGGTGTGGGCTAAAGAG-GAATTCA-CCC-CC-TAGACTGGGAGGTAAGAAGGC---ACAG--GAAGGGCAGGACCAGGGAA--AAACAGCTGTAGG--TTTATCAGTTAAGTACAAGTAGAGAAGTTTGCTGTTCTCAATTTCAATTCTAAGACAAGAGGTTTGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22243107 155 + 158406734 GTGGATATGGGCTGAAGAG-AAATTCA-TCC-CCACAGACTAGGAAGTCAGAAGTC---ACAG--AAAGGGCAGAACCAGGGAA--AAACAGCTGTAGG--TTTATCAGTTAAAT-CAAGTAGAGAAGTTTGCTATTCTCAATTTCATTTCTAAGACAAAAGGTTTAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50478916 149 +  54856640 GTGGGTGTGGGCTGAAGAG-AAATTCC-TTC-TGA------AGGAAGTCAGAAGGC---ACAG--AAAGGGCAGAACCAGGGAA--AAACAGGTGTAGG--TTTATCAGTTAAAT-CAAGTAGAGAAGTTTGCTATTCTCAATCTCATTTCCAAGACAAAAGGTTTAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       622535 157 -   2910086 GTGGGTGTGGGCTGAAGAG-AAATTCA-TCC-CCACAGACTAGGAAGTCAGAAGGC---ACAG--AAAGGGCAGAACCAGGGAACTGATAAACTGTAGG--TTTATCAGTTAAAT-CAAGTAGAGAAGTTTGCTATTCTCAATTTCATTTCTAAGACAAAAGGTTTAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40650630 155 +  42888418 GTGGGTGTGGGCTGAAGAG-AAATTCA-TCC-CCACAGACTAGGAAGTCAGAAGGC---ACAG--AAAGGGCAGAACCAGGGAA--AAACAGCTGTAGG--TTTATCAGTTAAAT-CAAGTACAGAAGTTTGCTATTCTCAATTTCATTTCTAAGACAAAAGGTTTAA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113274475 159 + 116334831 GTGGGTGTGGACTAAAG-G-GAGTTCGCCCA-CCACAGACTGAGAGGTCAGAAGGC---ACAGCCTGAGGGCAAGACTAGGGAG--AAAGAGCTGTAGG-TTTCATCAGTTAAGTTCAAGTAGAGAAAGCTGCTGCTCTTGATTTCATCTCTAAGACAAGAAGTTTGA
i micMur3.chr9              I 1033 I 200
s proCoq1.NW_012142813v1        19611 159 +     80520 GTGGGTGTGGACTAAAG-G-GAGTTCGCCCA-CCACAGACTGGGAGGTCAGAAGGC---ATACCCTGAGGACAAGACTAGGGAG--AAAGAGCTGTAGG-TTTTATCAGTTAAGTTCAAGTAGAGAAAGCTGCTGCTCTCGATTTCATCTCTAAGACAAGAAGTTTGA
i proCoq1.NW_012142813v1    I 44 C 0
s otoGar3.GL873530             637173 149 -  36342412 GTGGGTATGGACTGAAA-G-GAGTTCA-CCA-GCACAGTCTACAAAGTCAGAAGGC---AGAGCCTGAAGGCAGATCTAGGAAG--AAAGGGCTGCAGA-GTCTATCA------TTTAAGTAAAGAAAGCTGCTGCTCTCAATTTCATCTCTAAGAT---AAGTTTGA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81354252 154 + 145441459 CAGGGTGGGTGCTAAGGAGTTTATGCA-CCA-TCATACACTATAGGGTCAGAAAGC---ACAG--TCTG---AGAACTAGGGGG--AAATATCTGTAGGGTTTTATCAGTTTAGTACAAGCAGAGAAAGCTGCTGCTTTCAATTTCATCTCTAAGAT--GAGATTTGG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54412769 143 +  91889043 -ATGGTGTGGTCTAAGGAG-GAAGTTG-CCCACCACAGACT-GGAGGTC----------------AGAAGGCAGGACCAGAAAG--AAACAGCTGCAGA---TTATCAGTTAATTCAAAGGACAGAAAGATGCTGTTTTCAATTTCATTTCTAAGACCAGAGGTTTTT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1802482 155 +   3943991 --GGGTATAGGCCAAAG-G-GAATTTA-CCC-AC-CAGACTGGGAGGTTAGAGGGACAGGCAG--AGAGGGTAGGAGTAGGGAG--AAACAGTTATAGA--TTTTACCATTCAGTCCAAGTAGAAAAAGATGCCGCTTTCAATTTTATCTCTAAGACAAAAGGTCTGG
i dasNov3.JH570731          C 0 C 0

a score=561048.000000
s hg38.chr15_KI270850v1_alt    341286 49 +    430880 AACCAAAGTGTTGGCTACAAGAAAGAAGAGCAGAATAAAGACGGGCAGA
s panTro5.chr15              63494660 49 +  83230942 AACCAAAGTGTTGGCTACAAGAAAGAAGAGCAGAATAAAGACGGGCAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80451802 49 +  99763055 AACCAAAGTGTTGGCTACAAGAAAGAAGAGCAGAATAAAGACGGGCAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        51966 49 -   1709092 AACCAAAGTGTTGGCTACAAGAAAGAAGAGCAGAATAAAGACGGGCAGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17203728 49 - 121039945 AACCAAAGTGTTGGCTACAAGAAAGAAGAGTAGAATAAAGACTGGGAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60892300 49 + 169600520 AACTAAAGTGTTGGCTTCAAGAAAGAAGAGTAGAGTAAAGGCTGGGAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108419045 49 - 171882078 AACTAAAGTGTTGGCTTCAAGAAAGAAGAGTAGAGTAAAGGCTGGGAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        29494 49 -   2311642 AACTAAAGTGTTGGCTTCAAGAAAGAAGAGTAGAGTAAAGGCTGGGAGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        27658 49 -   1987038 AACTAAAGTGTTGGCTTCAAGAAAGAAGAGTAGAGTAAAGGCTGGGAGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21108195 49 -  24206276 AACTAAAGTGTTGGCTTCAAGAAAGAAGAGTAGAGTAAAGGCTGGGAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        23384 49 -   1397330 AACTAAAGTGTTGGCTTCAAGAAAGAAGAGTAGAGTAAAGGCTGGGAGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        46690 49 -   1784207 AACTAAAGTGTTGGCTACAAGAAAGAAGAGTAGAGCAAAGGCTGGGAGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22243262 46 + 158406734 AACCAAAGTGTTGGCTACAAGA---AAGAGCAGAATGAAGGCTGGGAGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50479065 49 +  54856640 AACCAAAGTGTCGGCTACAAGAAAGAAGAGTAGAATAAAGGCTGGGAGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       622692 49 -   2910086 AACCAAAGTGTTGGCTACAAGAAAGAAGAGTAGAATAAAGGCTGGGAGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40650785 49 +  42888418 AACCAAAGTGTTGGCTACAAGAAAGAAGAGTAGAATAAAGGCTGGGAGA
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        19770 42 +     80520 GGCGTAAGTGTTGACTA----GAAAAAGAGCAGAATAAAGGGCAGA---
i proCoq1.NW_012142813v1    C 0 I 129
s otoGar3.GL873530             637322 35 -  36342412 -------GTCTTGACTA----GAAAAAGAACAGAATAAAGGCTAGA---
i otoGar3.GL873530          C 0 I 3
s mm10.chr7                  81354406 42 + 145441459 GGTTTAAGTGTAGATC-----AGAAAAGAACAGA--AAGGGCTGGGAAG
i mm10.chr7                 C 0 I 1
s canFam3.chr3               54412912 32 +  91889043 GACAGAAGTGTTGGCT---------------AGAATAAGGGCTGGAA--
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1802637 44 +   3943991 -GCAGAAGCATTGGCTA----GAAGAGGAGCAGAACAAAGGCTGGGGCA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113274634 200 + 116334831 I

a score=1299441.000000
s hg38.chr15_KI270850v1_alt    341335 141 +    430880 CAGTTTGATTACCATGGGCAGGCATGCGCATGTGTGC-------------ATGCACACAC----------------------------------CCCATTAAGTCCCAAAGGTTGCTTTTTTTTTTTTTT--AATGTAATTGAGAGGATACT-G-CTAT-TTTATTGTGGGACAAGAAG------------------------------------AGCCTTCTTGCCTC
s panTro5.chr15              63494709 143 +  83230942 CCATTTGATTACCATGAGCAGGCATGCGCATGTGTGC-------------ATGCACACAC----------------------------------CCCATTAAGTCCCAAAGGTTGCTTTTTTTTTTTTTTTTAATGTAATTGAGAGGATACT-G-CTAT-TTTATTGTGGGACAAGAAG------------------------------------AGCCTTCTTGCCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80451851 140 +  99763055 CCATTTGATTACCATGAGCAGGCATGCGCATGTGTGC-------------ATGCACACAC----------------------------------CCCATTAAGTCCCAAAGGTTGCTTTTTTTTTTTTT---AATGTAATTGAGAGGATACT-G-CTAT-TTTATTGTGGGACAAGAAG------------------------------------AGCCTTCTTGCCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        52015 141 -   1709092 CAGTTTGATTACCATGGGCAGGCATGCGCATGTGTGC-------------ATGCACACAC----------------------------------CCCATTAAGTCCCAAAGGTTGCTTTTTTTTTTTTTT--AATGTAATTGAGAGGATACT-G-CTAT-TTTATTGTGGGACAAGATA------------------------------------AGCCTTCTTGCCTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17203777 143 - 121039945 CAGTTTGATTACCATGGGCAGGCATGCGCATGTGTGC-------------ATGCACACAC----------------------------------CCCATTAAGGCCCAAAGGTTGCtttttttttttttttttATGTAATTGAGAGGATACT-G-CTAT-TTTATTGTGGGACAAGAAA------------------------------------AGCCTTCTTGCCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60892349 141 + 169600520 CAGTTTGATTACCATGGGCAGGCACGCGCATGTGTGC-------------ATGCACATAC----------------------------------CCCATTAAGGCCCAAAGGTTGCTTTCTTTTCTTTTT--TATATAATTGAGAGGATACT-G-CTAT-TTTATTGTGGGAGAAGAAG------------------------------------AGCCTTCTTGCCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108419094 141 - 171882078 CAGTTTGATTACcatgggcatgcacatgcatgtgtgc-------------atgcacatAC----------------------------------CCCATTAAGGCCCAAAGGTTGCTTTCTTTTCTTTTT--TATATAATTGAGAGGATACT-G-CTAT-TTTATTGTGGGAGAAGAAG------------------------------------AGCCTTCTTGCCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        29543 141 -   2311642 CAGTTTGATTACCATGGGCAGGCACGCGCATGTGTGC-------------ATGCACATAC----------------------------------CCCATTAAGGCCCAAAGGTTGCTTTCTTTTCTTTTT--TATATAATTGAGAGGATACT-G-CTAT-TTTATTGTGGGAGAAGAAG------------------------------------AGCCTTCTTGCCTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        27707 141 -   1987038 CAGTTTGATTACCATGGGCAGGCACGCGCATGTGTGC-------------ATGCACATAC----------------------------------CCCATTAAGGCCCAAAGGTTGCTTTCTTTTCTTTTT--TATGTAATTGAGAGGATACT-G-CTAT-TTTATTGTGGGAGAAGAAG------------------------------------AGCCTTCTTGCCTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21108244 141 -  24206276 CAGTTTGATTACCATGGGCAGGCATGCGCAGGTGTGC-------------ATGCACATAC----------------------------------CCCATTAAGGCCCAAAGGTTGCTTTCTTTTCTCTTT--TATGTAATTGAGAGGATACT-G-CTAT-TTTATTGTGGGAGAAGAAG------------------------------------AGCCTTCTTGCCTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        23433 141 -   1397330 CAGTTTGATTACCATGGGCAGGCACGCGCATGTGTGC-------------ATGCACATAC----------------------------------CCCATTAAGGCCCAAAGGTTGTTTTCTTTTCTTTTT--TATGTAATTGAGAGGATACT-G-CTAT-TTTATTGTGGGAGAAGAAG------------------------------------AGCCTTCTTGCCTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        46739 138 -   1784207 CAGTTTGATTACCATGGGCAGGCATGCGCATGTGTGC-------------ATGCACACAC----------------------------------CCCATTAAGGCCCAAAGGTTGCTTTCTTTTCTTTTT--TATGTAATTGAGAGGATACT-G-CTAT-TTTATTGTG---GAAGAAG------------------------------------AGCCTTCTTGCCTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22243308 135 + 158406734 CAGTTTGATCACTGTGGGCAGGCACACGCATGTGTGC-------------ATGTACACACA--------------------------------ACCCGTTAAGGCTCAAAGGTTTCTTATT-----------TATGTAATTGAGAGGATATT-G-CTATATTTATTGTGGGACAATAAA------------------------------------AGCCTTCTTGCCTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50479114 122 +  54856640 CAGTTTGATCACCGTGGGCAGGC-------------------------------ACACACA--------------------------------ACCCATTAAGGCTCAAAGGTTTCTTCTT----TTTTG--TGTGTAATTGAGAGGATATT-G-CTATATTTATTGTGGGACAGTAAG------------------------------------AGCCTTCTTGCCTC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       622741 139 -   2910086 CAGTTTGATCACCTTGGTCAGGCACACGCATGTGTGC-------------ATGCACACACA--------------------------------ACCCATTAAGGCTCAAAGGTTTCTTCTTT---TTTTT--TATGTAATTGAGAGGATATT-G-CTGTATTTATTGTGAGACA--AGA------------------------------------AGCCTTCTCGCTTC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40650834 140 +  42888418 CAGTTTGATCACCGTGGGCAGGCACGCGCATGTGTGC-------------ATACACACACA--------------------------------ACCCACTAAGGCTCAAAGGTTTCTTCTT----TTTTT--AATGTAATTGAGAGGATATT-G-CTATATTTATTGTGGGACAATAAG------------------------------------AGCCTTCTTGCCTC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             637360 133 -  36342412 TACTTTGATCTTCTTAGGCAGGAGTGCGCATGTGTACATAGTAAGTATATATGTACACACAC-------------------------------CCCCATTATGGCCTAAA-ATTGTTTTCTT---TCTTC--AGTCTAAGTGAGAGGATACT-G-TGGGATTTAT---------------------------------------------------------CTGCCTC
i otoGar3.GL873530          I 3 C 0
s mm10.chr7                  81354449 179 + 145441459 --CTCAACTCCCCACTGGC-----TCCAGGACTGTGT-------------GTGCACACACCTCC-----------------------CTTTTATCTCACTAAGTCTCAATAGCTGCATTTT----TTTTT--AATGCAATCTAGAAAATAGTGG-ATGTACTTACTGTGGaacaaaaaatcaaaacacaacaaaacaaacaaacaaaaaaaaacCAGATTTCTTGCCTC
i mm10.chr7                 I 1 C 0
s canFam3.chr3               54412944 120 +  91889043 CAGTCTTCTCTCCA--GACAGAA---------------------------ACACACACAT----------------------------------ACTAGTAAGGTCCAAAGGTTTGTTTTTCTACTGTCA-----------AAGAGCATTTT-G-TCGTCCTTACTGGAAAACAGGAAG---------------------------------AGCAGCCTTCTTGCCTC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1802681 164 +   3943991 TAGTTTGATCTCCATGGAATGGCATGcatacatgcgc-------------gcacacacgcacacacacacaaacacacacgcacaTAATACTGTATCACTGGGGCCCAGAGACTGGTTTGG----TTTTT--GATGCAATTGAAAGGATTTT-GTCTGTATTTACTGTTGGACAGTAAC------------------------------------TGCTT---------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113274634 200 + 116334831 I
e proCoq1.NW_012142813v1        19812 129 +     80520 I

a score=19110.000000
s hg38.chr15_KI270850v1_alt    341476 1 +    430880 A
s panTro5.chr15              63494852 1 +  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80451991 1 +  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        52156 1 -   1709092 A
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17203920 1 - 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60892490 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108419235 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        29684 1 -   2311642 A
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        27848 1 -   1987038 A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21108385 1 -  24206276 A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        23574 1 -   1397330 A
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        46877 1 -   1784207 A
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22243443 1 + 158406734 A
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50479236 1 +  54856640 A
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       622880 1 -   2910086 A
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40650974 1 +  42888418 A
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113274834 1 + 116334831 A
i micMur3.chr9              I 200 C 0
s otoGar3.GL873530             637493 1 -  36342412 A
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81354628 1 + 145441459 A
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54413064 1 +  91889043 A
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1802845 1 +   3943991 A
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        19812 129 +     80520 I

a score=1246447.000000
s hg38.chr15_KI270850v1_alt    341477 91 +    430880 GCAGGAATACTCCTTGCCTGCAGCCTGC----CTATCCACCTACCACAAGAAAATCCAGTGCCTCA-ATATTCCAAGACCCTCGATCCAGAAAGGA
s panTro5.chr15              63494853 91 +  83230942 GCAGGAATACTCCTTGCCTGCAGCCTGC----CTATCCACCTACCACAAGAAAATCCAGTGCCTCA-ATATTCCAAGACCCTCGATCCAGAAAGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80451992 91 +  99763055 GCAGGAATACTCCTTGCCTGCAGCCTGC----CTATCCACCTACCACAAGAAAATCCAGTGCCTCA-ATATTCCAAGACCCTCGATCCAGAAAGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        52157 91 -   1709092 GCAGGAATACTCCTTGCCTGCAGCCTGC----CTATCCACCTACCACAAGAAAATCCAGTGCCTCA-ATATTCCAAGAACCTCGATCCAGAAAGGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17203921 91 - 121039945 GCAGGAATACTCCTTGCCTGCAGCCTGC----CTATCCACCTACCCCAAGAAAATCCAGTGCCTCA-ATATTCCAAGAACCTCGATCCAGAAAGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60892491 91 + 169600520 GCAGGAATACTCCTTGCCTGCAGCCTAC----CTATCCACCTACCCCAAGAAAATCCAGTGCCTCA-ATACGCCAAGAACCTTGATCTAGAAAGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108419236 91 - 171882078 GCAGGAATACTCCTTGCCTGCAGCCTAC----CTATCCACCTACCCCAAGAAAATCCAGTGCCTCA-ATATGCCAAGAACCTTGATCTAGAAAGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        29685 91 -   2311642 GCAGGAATACTCCTTGCCTGCAGCCTGC----CTATCCACCTACCCCAAGAAAATCCAGTGCCTCA-ATATGCCAAGAACCTTGATCTAGAAAGGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        27849 91 -   1987038 GCAGGAATACTCCTTGCCTGCAGCCTGC----CTATCCACCTACCCCAAGAAAATCCAGTGCCTCA-ATATGCCAAGAACCTTGATCTAGAAAGGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21108386 91 -  24206276 GCAGGAATACTCCTTGCCTGCAGCCTGC----CTATCCACCTACCCCAAGAAAATCCAGTGCCTCA-ATATGCCAAGAACCTTGATCTAGAAAGGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        23575 91 -   1397330 GCAGGAATACTCCTTGCCTGCAGCCTGC----CTATCCACCTACCCCAAGAAAATCCAGTGCCTCA-ATATGCCAAGAACCTTGATCTAGAAAGGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        46878 91 -   1784207 GCAGGAATACTCTTTGCCTGCAGCCTGC----CTATCCACCTACCCCAAGAAAATCCAGTGCCTCA-ATATGCCAAGAACTTTCATCTAGAAAGGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22243444 88 + 158406734 GCAGGAATAT---TTGTCTGCAGCCTGC----CTAGCCACCTACCCCAAGAAAATCCAGTGCCTCA-ATATGCCAAGAACCTTGATCCAGAAAGGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50479237 88 +  54856640 GCAGGAATAC---CTGTCTGCAGCCTGC----CTAGCCACCTATCCCAAGAAAATCCAGTGCCTCT-ATATGCCAAGAACGTTGATCCAGAAAGGA
i saiBol1.JH378108          C 0 I 3
s cebCap1.NW_016107610v1       622881 88 -   2910086 GCAGGAATAC---TTGTCTGCAGCCTGC----CTAGCCACCTACCCCAAGAAAATCCAGTGCCTCA-ATATGCCAAGAACCTTGATTCAGAAAGGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40650975 88 +  42888418 GCAGGAATAC---TTGTCTGCATCCTGC----CTAGCCACCTACCCCAAGAAAATCCAGTGCCTCA-ATATGCTAAGAACCTTGATCCAGAAAGGA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113274835 91 + 116334831 GCAAGAATACTCCTTGCCTACAGCTTGT----ATATCCTCCCACTCCAAGAAAATCCAGTGACCCA-ATATGCCAATTACCATGATCCAGATAGCA
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        19941 91 +     80520 GCAAGAATACTCCTTGCCTGCAGATTGC----ACATCCTCCCACTCCAAGAAAATCCAGTGACCCA-CTATGCCAATTACCACGATCCAGAAAGGA
i proCoq1.NW_012142813v1    I 129 C 0
s otoGar3.GL873530             637494 91 -  36342412 GGAGGAATGATCCCTACCTACAGTATGC----ATATTCACCTACTCCAAG-AAACCCAGTGACTCAGTTATGCCAATCACCTTCGTCTAGAAAGGA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81354629 57 + 145441459 GCAAGAA--------------------------------CTGGTGCCAAGAAAATCTAGTGCCATG-ATATGCCAAAT------ATCAAGAAAGGA
i mm10.chr7                 C 0 I 1173
s canFam3.chr3               54413065 41 +  91889043 ---------------CTCCGCAGCCTGT----GTATGCACCCACCC------------------------------------TGACCCAGAGAGGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1802846 92 +   3943991 GCAGGAATACGCCTCATCTGAAGCCTCCATCTCCATCCACCCATCCCAAGGAAATCCAGCGTC----ATACGCAAAATATCCTGATGCAGAAAGGA
i dasNov3.JH570731          C 0 C 0

a score=18380.000000
s hg38.chr15_KI270850v1_alt    341568 1 +    430880 C
s panTro5.chr15              63494944 1 +  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80452083 1 +  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        52248 1 -   1709092 C
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17204012 1 - 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60892582 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108419327 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        29776 1 -   2311642 C
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        27940 1 -   1987038 C
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21108477 1 -  24206276 C
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        23666 1 -   1397330 C
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        46969 1 -   1784207 C
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22243532 1 + 158406734 C
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50479328 1 +  54856640 C
i saiBol1.JH378108          I 3 C 0
s cebCap1.NW_016107610v1       622969 1 -   2910086 C
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40651063 1 +  42888418 C
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113274926 1 + 116334831 C
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        20032 1 +     80520 C
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             637585 1 -  36342412 T
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54413106 1 +  91889043 C
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1802938 1 +   3943991 C
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81354686 1173 + 145441459 I

a score=5839290.000000
s hg38.chr15_KI270850v1_alt    341569 327 +    430880 ATCACGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGATCGGACAGACTTCTCTAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAG---GAAAAATCGCATTAATATC-CCTTAGGTGGCCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGCGTTTCTTCCAAGAAAGAAGGTCTTGTGTATAAGATACATTTTTG---------------------------TTTTA------------CTCCTG-----------------AA--AAGTCGTGTTGAGTGGAAGCATTTGCTATGC------AGATGCCCTGG
s panTro5.chr15              63494945 327 +  83230942 ATCACGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGATCGGACAGACTTCTCTAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAG---GAAAAATCGCATTAATATC-CCTTAGGTGGCCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGCGTTTCTTCCAAGAAAGAAGGTCTTGTGTATAAGATACATTTTTG---------------------------TTTTA------------CTCCTG-----------------AA--AAGTCTTGTTGAGTGGAAGCATTTGCTATGC------AGATGCCCTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80452084 327 +  99763055 ATCACGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGATCGGACAGACTTCTCTAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAG---GAAAAATCGCATTAATATC-CCTTAGGTGGCCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGCGTTTCTTCCAAGAAAGAAGGTCTTGTGTATAAGATACATTTTTG---------------------------TTTTA------------CTCCTG-----------------AA--AAGTCTTGTTGAGTGGAAGCATTTGCTATGC------AGATGCCCTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        52249 326 -   1709092 ATCACGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGATCGGACAGACTTCTCTAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAG---GAAAAATCGCATTAATATC-CCTTAGGTGGCCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGCGTTTCTTCCAAGAAAGAAGGTCTTGTGTATAAGATACATTTTTG---------------------------TTTTA------------CTCCTG-----------------AA--AAGTCTTGTTGAGTGGAAGCATTTGCTATGC------AGATGCCCT-G
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17204013 327 - 121039945 ATCATGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGATCGGACAGACTTCTCTAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAG---GAAAACTCACATTAATATC-CCTTAGGTGGCCAATCCTCAGCCTTG--------------------GCTTTGCAGCAGGGCGTTTCTTCCAAGAAAGAAGGTCTTGTGTATAAGATACATTTTTG---------------------------TTTTA------------CTCCTG-----------------AA--AAGTCTTGTTGAGTGGAAGCATTTGCTATGC------AGATGCCCCGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60892583 327 + 169600520 ATCATGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGCTCGGACAGACTTCTCCAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAG---GAAAAATCACATTAATATC-CCTTAGGTGGCCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGAGTTTCTTCCAAGAAAGAAGGCCTTGTGTATAAGATACATTTTTG---------------------------TTTTA------------CTCCTG-----------------AA--AAGTCTTGTTGAGTGGAAGCATTTGCTATGC------AGATGCCCAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108419328 327 - 171882078 ATCATGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGCTCGGACAGACTTCTCCAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAG---GAAAAATCACATTAATATC-CCTTAGGTGGCCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGAGTTTCTTCCAAGAAAGAAGGCCTTGTGTATAAGATACATTTTTG---------------------------TTTTA------------CTCCTG-----------------AA--AAGTCTTGTTGAGTGGAAGCATTTGCTATGC------AGATGCCCAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        29777 327 -   2311642 ATCATGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGCTCGGACAGACTTCTCCAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAG---GAAAAATCACATTAATATC-CCTTAGGTGGCCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGAGTTTCTTCCAAGAAAGAAGGCCTTGTGTATAAGATACATTTTTG---------------------------TTTTA------------CTCCTG-----------------AA--AAGTCTTGTTGAGTGGAAGCATTTGCTATGC------AGATGCCCAGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        27941 327 -   1987038 ATCATGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGCTCGGACAGACTTCTCCAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAG---GAAAAATCGCATTAATATC-CCTTAGATGGCCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGAGTTTCTTCCAAGAAAGAAGGCCTTGTGTATAAGATACATTTTTG---------------------------TTTTA------------CTCCTG-----------------AA--AAGTCTTGTTGAGTGGAAGCATTTGCTATGC------AGATGCCCAGG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21108478 327 -  24206276 ATCATGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGCTCGGACAGACTTCTCCAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAG---GAAAAATCGCATTAATATC-CCTTAGGTGGCCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGAGTTTCTTCCAAGAAAGAAGGCCTTGTGTATAAGATACATTTTTG---------------------------TTTTA------------CTCCTG-----------------AG--AAGTCTTGTTGAGTGGAAGCATTTGCTATGC------AGATGCCCAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        23667 327 -   1397330 ATCATGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGCTCGGACAGACTTCTCCAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAG---GAAAAATCGCATTAATATC-CCTTAGATGGCCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGAGTTTCTTCCAAGAAAGAAGGCCTTGTGTATAAGATACATTTTTG---------------------------TTTTA------------CTCCTG-----------------AA--AAGTCTTGTTCAGTGGAAGCATTTGCTATGC------AGATGCCCAGG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        46970 327 -   1784207 ATCACGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGCTCGGACAGACTTCTCCAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAG---GAAAAATCGCATTAATATC-CCTTAGGTGGCCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGAGTTTCTTCCAAGAAAGAAGGCCTTGTGTATAAGATACATTTTTG---------------------------TTTTA------------CTCCTG-----------------AA--AAGTCTTGTTGAGTGGAAGCATTTGCTATGC------AGATGCCCAGG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22243533 318 + 158406734 ATCATGCTAACTCACCTCCTTGCAGCGCATCCTTCTGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGCTCGGACAGACTTCTCTAGTTCGAACACCAGATACACATACCCTATTCCCAATGAGAG--GAAAAAATCACATTACTATC-----------CCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGAGTTTCCTCCAAGAAAGAAGGCCTTGTGTATAAGATACATTTTTG---------------------------TTTTA------------CTCCTG-----------------AA--AAGTCTTGTTGAGTCGAAGCATTTGCTGTGC------AGATGCCCAGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50479329 319 +  54856640 ATCATGTTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGCTCTGACAGACTTCTCTAGTTCGAACACCAGATACACATACCCTATTCCCAATGAGAG-AAAAAAAATCACATTACTATC-----------CCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGGGAATTTCTTCCAAGAAAGAAGGCCTTGTGTATAAGATACATTTTTG---------------------------TTTGA------------CTCCTG-----------------AA--AAGTCTTGTTGAGTCGAAGCATTTGCTGTGC------AGATGCCCAGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       622970 320 -   2910086 ATCATGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGACCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGCTCGGACAGACTTCTCTAGTTCGAACACCAGATACACATACCCTATTCCCAATGACAGGAAAAAAAATCACATTACTATC-----------CCACTCCTCAGCCTTG--------------------GCTTTGTGGCAGGGAGTTTCTTCCAAGAAAGAAGGCCTTGTGTATAAGATACATTTTTG---------------------------TTTTA------------CTCCTG-----------------AA--AAGTCTTGTTGAGTCGAAGCATTTGCTGTGC------AGATGCCCAGG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40651064 320 +  42888418 ACCATGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAACAAGCCTGAAGCAAGGCTCGGACAGACTTCTCTAGTTCGAACACCAGATACACATACCCTATTCCCAATGAGAGGAAAAAAAATCACATTACTATC-----------CCACTCCTCAGCCTTG--------------------GCTTTGCAGCAGCGAGTTTCTTCCAAGAAAGAAGGCCTTGTGTATGAGATACATTTTTG---------------------------TTTTA------------CTCCTG-----------------AA--AAGTCTTGTTGAGTTGAAGCATTTGCTGTGC------AGATGCCCAGG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113274927 327 + 116334831 ACCAGCCTAACTCACCTCCTTACAGCGCATTCTTCGGCTGGACATCTTGAAATAATATTCACTCAGTCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGCCCGGACAGACTTCTCTAGTTCGAAGACCAGATACACATACCCTATGCCCAATGACAG---GAAAGATAACATTAACATC-GCTCAGGTGGCTACCCCTCAGCCTTG--------------------GCTTTGTAGCAGGGAGTTTCTTCCAAGAAA-GAGGCCTTGGGTTTAAGATACACTTTTG---------------------------TCCTA------------CTCCAG-----------------AA--AAGTCTTGTAGAGTGGAAGCACTTGTTATGCC-----AGATGCCCAGG
i micMur3.chr9              C 0 I 21
s proCoq1.NW_012142813v1        20033 328 +     80520 ACCAGGCTAACTCACCTCCTTACAGCGCATCCTTCGGCTAGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGCCCGGACAGACTTCTCTAGTTCGAAGACCAGATACACATACCCTATTCCCAATGAGAG---GAAAGATCACATTAACATC-GCTTAGGTGGCTACCCCTCAGCCTTG--------------------GCTGTGTAGCAGGGAGTTTCTTCCAAGAAAGGAGGCCTTGGGTATAAGATACACTTTTG---------------------------TCCTA------------CCCCTG-----------------AG--AAGTCTCGTGGCATGGAAGCACTTGCTATGCC-----AGATGCCCAGG
i proCoq1.NW_012142813v1    C 0 I 21
s otoGar3.GL873530             637586 337 -  36342412 ACTAGGCTAACTCACCTCCTTACAGCGCATCCTTCGGCTGGACATCTTAAAATAATATTCACTCAGGCCATCTGGGCTCAGTGGGTCATGAGAGCAAGCCTGAAGCAAGGCCCGGACAGACTTCTCTAGTTCGAAGACCAGATACACATACCCTATTCCCGAGGAGAG---GAAAGACCACATTAACATT-GCTTGG--GGCTATTCCTCGGTCTAG--------------------GCTTTACAGCAGGCAGTTTCTTCCAAGAAAGGAAGCCTTGGGTAGAAGACACA-TTCTG---------------------------CCATACCTCCCCCCGCCCCCCTG-----------------GA--CAGTCCTGTTGAATGGGAGCACTTGCTATGCT-----AGTTGCCCAGG
i otoGar3.GL873530          C 0 I 12
s mm10.chr7                  81355859 390 + 145441459 ACCAAGCTAACTCACCTCTTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAACAAGCCTGAAGCAAGGCCCGGACGGACTTCTCTAGTTCAAACACCAAATACACATACCCTATACTCAATGAAAG---GAAAAGAAGCCTTACTATC-CCTCAGG-GGCAACTTAACATCCTCGTGTGTGGCTGAGGAGCCAAAGCTTTG-AGCAGGGAGTTTCTTCCATGGGGAGAAACATCAAGTGCAAGGCACTGCTTTGGAGGGTGGGTGCTGGGGACCCCACAGTCTCCA------------CCACTGAATCCAATCCCTTACCCAA--AAGGCTTGTC-----AGACCCTTTACTGTGCCTTATGCTATGCTAAGG
i mm10.chr7                 I 1173 C 0
s canFam3.chr3               54413107 328 +  91889043 ACTGTGCTAACTCACCTCCTTGCAGCGCATCCTTCGGCTGGACATCTTGAAATAATATTCACTCAGGCCATCTGGGCTCAGCGGGTCATGAGAGCAAGCCTGAAGCAAGGCCCGGACAGACTTCTCTAGTTCAAAGACCAGATACACATACCCTATTTCCAATAAAAG---GAGAAGCTGCATTAACATC-CCTGAGGTGGTCACTCTTCAGCTTTG--------------------GTTTTGCAGTAGGGTATTTCTTCCAGGAGAAATGGCCTCATGTCTAAGATACATTTTTG---------------------------TCCTA------------CTTCTG-----------------GAACAAGGTCTTTCAAATGGGCGCCCTTGATGTGTC-----AGATGTCAG--
i canFam3.chr3              C 0 I 13
s dasNov3.JH570731            1802939 328 +   3943991 ACAATGCTAACTCACCTCCTTGCAGCGCATTCTGCGGCTGGACATCTTGAAATAATACTCGCTCAGGCCATCTGGGCTCAGTGGATCATGAGAGCAAGCCTGAAGCAAGGCCCGGACAGACTTCTCTAGTTCAAAGACCAGATACACATACCCTATTCCCAATGAGAG---GAGAAATGGCATTAATATCCCCTCCTGTGATTACTCCTCAGCCCTG--------------------GCTTCACAGTAGAGATCTTTCTCCAAGAGAGGAGGCATTGTGTGTGAGATACATTTTTG---------------------------TCCTA------------ATCCTG-----------------AA--AAGTTTTGTCAAATGGAAGCACTTTCTTTGCC-----AGATGTTCAG-
i dasNov3.JH570731          C 0 C 0

a score=72455.000000
s hg38.chr15_KI270850v1_alt    341896 11 +    430880 -------------GTTGTGGGCCT
s panTro5.chr15              63495272 11 +  83230942 -------------GTTGTGGGCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80452411 11 +  99763055 -------------GTTGTGGGCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        52575 11 -   1709092 -------------GTTGTGGGCCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17204340 11 - 121039945 -------------GTTGTGGGCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60892910 11 + 169600520 -------------GTTGTTGGCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108419655 11 - 171882078 -------------GTTGTTGGCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        30104 11 -   2311642 -------------GTTGTTGGCCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        28268 11 -   1987038 -------------GTTGTTGGCCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21108805 11 -  24206276 -------------GTTGTTGGCCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        23994 11 -   1397330 -------------GTTGTTGGCCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        47297 11 -   1784207 -------------GTTGTAGGCCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22243851 11 + 158406734 -------------GTTGTGGGCAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50479648 11 +  54856640 -------------GTTGTGGGCAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       623290 11 -   2910086 -------------GTTGTGGGCAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40651384 11 +  42888418 -------------GTTGTGGGCAT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             637935 11 -  36342412 -------------GGTGCACACCA
i otoGar3.GL873530          I 12 I 1
s mm10.chr7                  81356249 11 + 145441459 -------------GAGAGAGATTT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54413448 10 +  91889043 -------------GAAGCACACC-
i canFam3.chr3              I 13 C 0
s dasNov3.JH570731            1803267 23 +   3943991 ACCAAGGGCAGGAGAAGTATACT-
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113275254 21 + 116334831 I
e proCoq1.NW_012142813v1        20361 21 +     80520 I

a score=21416186.000000
s hg38.chr15_KI270850v1_alt    341907 1281 +    430880 CCCTCCCACCCT-GGTGAAGGAAAGGACT-GGCAAGCTGAGACAGAG-GATCCCACC-ATTA-CCA--CAGCT-CTCTATGCAAG-AACACAGAGCATGTTCAGGTCAGCAGAGCCAG--------GC-TTTCCT-GGTGGCAGG-----AAAGATGGC-----------------------------AGGTATTGCTTTAAACACCTACTTAAACCATTAGTTC-AG--TTCA--------------ATGAAGATGGGGCAGGGTGAAAATAGCACCTGCTCCTTTCTACAGGGAAGGGATCTCATTTCAGACCAGTGAGGAATC-AGATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGG-ACTTCAGAATTAGGTCAGGCAACAACGTAACTGGGCAGGACAGGCAGGCAAGGGAAAGCTTTTCA----AACGCCTTATTTTGAGAGGAAAGGT-GCTGCTTGGGTTCAGGTTTAGAGAGAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAACT-CCCACTGCTGTGTAAGTCTGGACAGATGGAACATTAGCTCAGAAGAAACAGAGGGACATGTTAGGTTGAAGAGA-AAGTGCTGACAGATGGCAGGTCTGTGCCCTGGAGTGCC--C--ACCATGTTACCAACATGCAGCTGTGACATCCCAGCACCCCTAGGTGCAGTTATGT-ACTAGGGAAGGGAA-AAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGATGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAAGAATGGCAGAAGCTGAGGAACCATCTTTCCCAGTAAAGACACAAACACAGAATCACCAGCATTC-TCCTCCCTGGCTCATCCCCACTGACAAACAACTCAGAAACGAATGCTGATCTCCGG-------TGTAAGCTCCCGACA-TAAGGAGCA---CTATGGGGGTCTATGAAATGCAC-CTCTC---CC-CTCAGA------------------------------------------CACTCATGTAATA-----CCCTGAG--CTCAGGCAGGGCATTCAGCCCCTGGCCTCAATTCCAAGTTTCATGCTCCTGAAAGACATG-CCCCACCCTTCAACTCTTAAAGC---AGGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGTAGATGGCAAAGAGAT-AAACAGGGGA-----------GGTTAGAGAATCAACAAAGCCA-CACTCTTCCCT-GGGGTGAACTTGTCCAGTA---AGAACCTG
s panTro5.chr15              63495283 1280 +  83230942 CCCTCCCACCCT-GGTGAAGGAAAGGACT-GGCAAGCTGAGACAGAG-GATCCCACC-ATTA-CCA--CAGCT-CTCTATGCAAG-AACACAGAGCATGTTCAGGTCAGCAGAGCCAG--------GC-TTTCCT-GGGGGCAGG-----AAGGATGGC-----------------------------AGGTATTGCTTTAAACACCTACTTAAACCATTAGTTC-AG--TTCA--------------ATGAAGATGGGGCAGGGTGAAAATAGCACCTGCTCCTTTCTACAGGGAAGGGATCTCATTTCAGACCAGTGAGGAATC-AGATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGG-ACTTCAGAATTAGGTCAGGCAACAACGTAACTGGGCAGGACAGGCCGGCAAGGGAAAGCTTTTCA----AATGCCTTATTTTGAGAGGAAAGGT-GCTGCTTGGGTTCAGGTTTAGAGAGAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAACT-CCCACTGCTGTGTAAGTCTGGACAGATGGAACATTAGCTCAGAAGAAACAGAGGGACATGTTAGGTTGAAGAGA-AAGTGCTGACAGATGGCAGGTCTGTGCCCTGGAGTGCC--C--ACCATGTTACCAACATGCAGCTGTGACATCCCAGCACCCCTAGGTGCAGTTATGT-ACTAGGGAAGGGAA-AAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGATGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAAGAATGGCAGAAGCTGAGGAACCATCTTTCCCAGTAAAGACACAAACACAGAATCACCAGCATTC-TCCTCCCTGGCTCATCCCCACTGACAAACAACTCAGAAACGAATGCTGATCTCCGG-------TGTAAGCTCCCGACA-TA-GGAGCA---CTATGGGGGTCTATGAAATGCAC-CTCTC---CC-CTCAGA------------------------------------------CACTCATGTAATA-----CCCTGAG--CTCAGGCAGGGCATTCAGCCCCTGGCCTCAATTCCAAGTTTCATGCTCCTGAAAGACATG-CCCCACCCTTCAACTCTTAAAGC---AGGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGTAGATGGCAAAGAGAT-AAACAGGGGA-----------GGTTAGAGAATCAACAAAGCCA-CACTCTTCCCT-GGGGTGAACTTGTCCAGTA---AGAACCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80452422 1280 +  99763055 CCCTCCCACCCT-GGTGAAGGAAAGGACT-GGCAAGCTGAGACAGAG-GATCCCACC-ATTA-CCA--CAGCT-CTCTATGCAAG-AACACAGAGCATGTTCAGGTCAGCAGAGCCAG--------GC-TTTCCT-GGGGGCAGG-----AAGGATGGC-----------------------------AGGTATTGCTTTAAACACCTACTTAAACCATTAGTTC-AG--TTCA--------------ATGAAGATGGGGCAGGGTGAAAATAGCACCTGCTCCTTTCTACAGGGAAGGGATCTCATTTCAGACCAGTGAGGAATC-AGATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGG-ACTTCAGAATTAGGTCAGGCAACAACGTAACTGGGCAAGACAGGCCGGCAAGGGAAAGCTTTTCA----AACGCCTTATTTTGAGAGGAAAGGT-GCTGCTTGGGTTCAGGTTTAGAGAGAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAACT-CCCACTGCTGTGTAAGTCTGGACAGATGGAACATTAGCTCAGAAGAAACAGAGGGACATGTTAGGTTGAAGAGA-AAGTGCTGACAGATGGCAGGTCTGTGCCCTGGAGTGCC--C--ACCATGTTACCAACATGCAGCTGTGACATCCCAGCACCCCTAGGTGCAGTTATGT-ACTAGGGAAGGGAA-AAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGATGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAAGAATGGCAGAAGCTGAGGAACCATCTTTCCCAGTAAAGACACAAACACAGAATCACCAGCATTC-TCCTCCCTGGCTCATCCCCACTGACAAACAACTCAGAAACGAATGCTGATCTCCGG-------TGTAAGCTCCCGACA-TA-GGAGCA---CTATGGGGGTCTATGAAATGCAC-CTCTC---CC-CTCAGA------------------------------------------CACTCATGTAATA-----CCCTGAG--CTCAGGCAGGGCATTCAGCCCCTGGCCTCAATTCCAAGTTTCATGCTCCTGAAAGACATG-CCCCACCCTTCAACTCTTAAAGC---AGGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGTAGATGGCAAAGAGAT-AAACAGGGGA-----------GGTTAGAGAATCAACAAAGCCA-CACTCTTCCCT-GGGGTGAACTTGTCCAGTA---AGAACCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        52586 1276 -   1709092 CCCTCCCACCCT-GGTGAAGGAAAGGACT-GGCAAGCTGAGACAGAG-GATCCCACC-ATTA-CCA--CAGCT-CTCTATGCAAG-AACACAGAGCATGTTCAGGTCAGCAGAGCCAG--------GC-TTTCCT-GGGGGCAGG-----AAGGATGGC-----------------------------AGGTATTGCTTTAAACGCCTACTTAAACCATTAGTTC-AG--TTCA--------------ATGAAGATGGGGCAGGGTGAAAATAGCACCTGCTCCTTTCTACAGGGAAGGGATCTCATTTCAGACCAGTGAGGAATC-AGATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGG-ACTTCAGAATTAGGTCAGGCAACAACGTAACTGGGCAGGACAGGCAGGCAAGGGAAAGCTTTTCA----AACACCTTATTTTGAGAGGAAAGGT-GCTGCTTGGGTTCAGGTTTAGAGAGAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAACT-CCCACTGCTGTGTAAGTCTGGACAGATGGAACATTAGCTCAGAAGAAACAGAGGGACATGTTAGGTTGAAGAGA-AAGTGCTGACAGATGGCAGGTCTGTGCTCTGGAGTGCC--C--ACCATGTTACCAACATGCAGCTGTGACATCCCAGCACCCCTAGGTGCAGTTATGT-ACTAGGGAAGGGAA-AAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGATGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAAGAATGGCAGAAGCTGAGGAACCATCTTTCCCAGTAAAGACACAAACACAGAATCACCAGCATTC-TCCTCCCTGGCTCATCCCCACTG----ACAACTCAGAAATGAATGCTAATCTCCGG-------TGTAAGCTCCTGACA-TA-GGAGCA---CTATGGGGGTCTATGAAATGCAC-CTCTC---CC-CTCAGA------------------------------------------CACTCATGTAATA-----CCCTGAG--CTCAGGCAGGGCATTCAGCCCCTGGCCTCAATTCCAAGTTTCATGCTCCTGAAAGACATG-CCCCACCCTTCAACTCTTAAAGC---AGGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGTAGATGGCAAAGAGAT-AAACAGGGGA-----------GGTTAGAGAATCAACAAAGCCA-CACTCTTCCCT-GGGGTGAACTTGTCCAGTA---AGAACCTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17204351 1319 - 121039945 CCCTCCCACCCT-GGTGAAGGAAAGGACT-GGCAAGCTGAGACAGAG-GATCCCACC-ATTA-CCA--CAGCT-CTCTATGCAAG-AACACAGA----GTTCAGGTCAGCAGAGCCAG--------GC-TTTCCT-GGGGGCAGG-----AAGGATGGC-----------------------------AGGTATTGCTTTAAACGCCTACTTAAACCATTAGTTC-AG--TTCA--------------ATGAAGATGGGGCAGGGTGAAAATAGCACCTGCTCCTTTCTACAGGGAAGGGATCTCATTTCAGACCAGTGAGGAATC-AGATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGG-ACTTCAGAATTAGGTCAGGCAACAACGTAACTGGGCAGGACAGGCAGGCAAGGGAAAGCTTTTCA----AACGCCTTATTTTGAGAGGAAAGAT-GCTGCTTGGGTTCAGGTTTAG-TAGAAGTGTACAAGGAAG-----------GCGTTTCAGA-GGCAACT-CCCACTGCTGTGTAAGTCTGGACAGATGGAACATTAGCTCAGAAGAAACAGAGGG--ATGTTAGGTTGAGGAGA-AAGTGCTGACAGATGACAGGTCTGTGCCCTGGAGTGCC--C--ACCATGTTACCAACATGCAGCTGTGACATCCCAGCACCCCTAGGTGCAGTTATGT-ACTAGGGAAGGGAA-AAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAAGAATGGCAGAAGCTGAGGAACCATCTTTCCCAGTAAAAACACAAACACAGAATCACCAGCATTC-TCCTCCCTGGCTCATCCCCACTGACAAACAACTCAAAAATGAATGCTGATCTCCGG-------TGTAAGCTCCCGACA-TA-GGAGCA---CTATGGGGGTCTATGAAATGCAC-CTCTC---CC-CTCAGGGAGTGTCTGAGGGGAGTGTCTGAGTGACACTCATGAGGATATTACTCATGTAATT-----CCCTGAG--CTCAGGCGGGGGATTCAGCCCCTGGCTTCAATTCCAAGTTTCATGCTCCTGAAAGACATG-CCCCACCCTTCAACTCTTAAAGCAGGAGGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAAGTGGCTTCATTCACAGCTTTGGTAGATGGCAAAGAGAT-AAACAGGGGA-----------GGTTAGAGAATCAACAAAGCCACCGCTCTTCCCC-AGGGTGAACTTGTCCAGTA---AGAACCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60892921 1282 + 169600520 CCCTCCCACCCT-GGTGAAGGAAAGGACT-GGCAAGCTGAGACAGAGAGATCCCACC-ATTA-CCA--CAGCT-CTCTATGCCAG-AACACACAGCATGTTCAGGTCAGCAGAGCCAG--------GC-TTTCCT-GGGGGCAGG-----AAGGATGGC-----------------------------AGTTATTGCTTTAAACGCCTACTTAAACCATTAGTTC-AG--TTCA--------------ATGAAGATGGAGCAGGGTGAAAATAGCAGCTGCTCCTTTCTACAGGGAGGGGATCTCATTTCAGACCAGTGAGGAATC-AGATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGG-ACTTCAGAATTAGGTCAGGCAACAACGTAACTGGGCAGGACAGGCAGGCAAGGGAAAGCTTTTCA----AACACCTTATTTTGAGAGGAAAGGT-GCTGCTTGGGTTCAGGTTTAGACAGAAGTGTAC----AAG-----------GGGTTTCAGA-GGCAGCT-CCCACTGCTGTGTAAGTCTGGACAGATGCAACATTAGCTCCGAAGAAATAGAGGGACGTGTTAGGTTGAAGAGA-AAGTGCTGACAGATGACAGGTCTGTGCCCTGGAGTGCC--C--ACCATGTTACCAACATGCAGCTGTGACATCCCAGCACCCATAGGTGCAGTTATGT-TCTAGGGAAGGGAA-AAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAACAATGGCAGAAGCTGAGGAACCATCCTTCCCAGTAAAGACGCAAACACAGAATCACCAGCATTC-TCCTCCCTGGCTCATCCCCACTGACTGACAACTCAGAAATGGATGCTGATCTCCGG-------TGTAAGCTCCCGACA-TA-GGAGCA---CTATGGGGGTATATGAAATGCAC-CTCTC---CC-CTCAGA------------------------------------------CACTCATGTAATAC----CCCTGAA--CTCAGGCAGGGAATTCAGCCCCTGGCCTCAATTCCAAGTTTCATGCTCCTGAAAGACATG-CCCCACCCTTCTACTCTTAAAGCAGGAGGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGTAGATGGCAAAGAGAT-AAACAGGGGA-----------GGTTAGAAAATCAGCAAAGCCACCACTCTTCCCT-GGGGTGAGCTTGTCCAGTA---AGAACCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108419666 1286 - 171882078 CCCTCCCACCCT-GGTGAAGGAAAGGACT-GGCAAGCTGAGACAGAGAGATCCCACC-ATTA-CCA--CAGCT-CTCTATGCCAG-AACACACAGCATGTTCAGGTCAGCAGAGCCAG--------GC-TTTCCT-GGGGGCAGG-----AAGGATGGC-----------------------------AGTTATTGCTTTAAACGCCTACTTAAACCATTAGTTC-AG--TTCA--------------ATGAAGATGGAGCAGGGTGAAAATAGCAGCTGCTCCTTTCTACAGGGAGGGGATCTCATTTCAGACCAGTGAGGAATC-AGATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGG-ACTTCAGAATTAGGTCAGGCAACAACGTAACTGGGCAGGACAGGCAGGCAAGGGAAAGCTTTTCA----AACGCCTTATTTTGAGAGGAAAGGT-GCTGCTTGGGTTCAGGTTTAGACAGAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAGCT-CCCACTGCTGTGTAAGTCTGGACAGATGCAACATTAGCTCCGAAGAAATAGAGGGACGTGTTAGGTTGAAGAGA-AAGTGCTGACAGATGACAGGTCTGTGCCCTGGAGTGCC--C--ACCATGTTACCAACATGCAGCTGTGACATCCCAGCACCCATAGGTGCAGTTATGT-TCTAGGGAAGGGAA-AAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAACAATGGCAGAAGCTGAGGAACCATCCTTCCCAGTAAAGACGCAAACACAGAATCACCAGCATTC-TCCTCCCTGGCTCATCCCCACTGACTGACAACTCAGAAATGGATGCTGATCTCCGG-------TGTAAGCTCCCGACA-TA-GGAGCA---CTATGGGGGTATATGAAATGCAC-CTCTC---CC-CTCAGA------------------------------------------CACTCATGTAATAC----CCCTGAA--CTCAGGCAGGGAATTCAGCCCCTGGCCTCAATTCCAAGTTTCATGCTCCTGAAAGACATG-CCCCACCCTTCTACTCTTAAAGCAGGAGGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGTAGATGGCAAAGAGAT-AAACAGGGGA-----------GGTTAGAAAATCAGCAAAGCCACCACTCTTCCCT-GGGGTGAGCTTGTCCAGTA---AGAACCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        30115 1285 -   2311642 CCCTCCCACCCT-GGTGAAGGAAAGGACT-GGCAAGCTGAGACAGAGAGATCCCACC-ATTA-CCA--CAGCT-CTCTATGCCAG-AACACACAGCATGTTCAGGTCAGCAGAGCCAG--------GC-TTTCCT-GGGGGCAGG-----AAGG-TGGC-----------------------------AGTTATTGCTTTAAATGCCTACTTAAACCATTAGTTC-AG--TTCA--------------ATGAAGATGGAGCAGGGTGAAAATAGCAGCTGCTCCTTTCTACAGGGAGGGGATCTCATTTCAGACCAGTGAGGAATC-AGATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGG-ACTTCAGAATTAGGTCAGGCAACAACGTAACTGGGCAGGACAGGCAGGCAAGGGAAAGCTTTTCA----AACGCCTTATTTTGAGAGGAAAGGT-GCTGCTTGGGTTCAGGTTTAGACAAAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAGCT-CCCACTGCTGTGTAAGTCTGGACAGATGCAACATTAGCTCCGAAGAAATAGAGGGACGTGTTAGGTTGAAGAGA-AAGTGCTGACAGATGACAGGTCTGTGCCCTGGAGTGCC--C--ACCATGTTACCAACATGCAGCTGTGACATCCCAGCACCCATAGGTGCAGTTATGT-TCTAGGGAAGGGAA-AAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAACAATGGCAGAAGCTGAGGAACCATCCTTCCCAGTAAAGACGCAAACACAGAATCACCAGCATTC-TCCTCCCTGGCTCATCCCCACTGACTGACAACTCAGAAATGGATGCTGATCTCTGG-------TGTAAGCTCCCGACA-TA-GGAGCA---CTATGGGGGTATATGAATTGCAC-CTCTC---CC-CTCAGA------------------------------------------CACTCATGTAATAC----CCCTGAA--CTCAGGCAGGGAATTCAGCCCCTGGCCTCAATTCCAAGTTTCATGCTCCTGAAAGACATG-CCCCACCCTTCTACTCTTAAAGCAGGAGGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGTAGATGGCAAAGAGAT-AAACAGGGGA-----------GGTTAGAAAATCAGCAAAGCCACCACTCTTCCCT-GGGGTGAGCTTGTCCAGTA---AGAACCTG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        28279 1286 -   1987038 CCCTCCCACCCT-GGTGAAGGAAAGGACT-GGCAAGCTGAGACAGAGAGATCCCACC-ATTA-CCA--CAGCT-CTCTATGCCAG-AACACACAGCATGTTCAGGTCAGCAGAGCCAG--------GC-TTTCCT-GGGGGCAGG-----AAGGATGGC-----------------------------AGTTATTGCTTTAAACGCCTACTTAAACCATTAGTTC-AG--TTCA--------------ATGAAGATGGAGCAGGGTGAAAATAGCAGCTGCTCCTTTCTACAGGGAGGGGATCTCATTTCAGACCAGTGAGGAATC-AGATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGG-ACTTCAGAATTAGGTCAGGCAACAACGTAACTGGGCAGGACAGGCAGGCAAGGGAAAGCTTTTCA----AACGCCTTATTTTGAGAGGAAAGGT-GCTGCTTGGGTTCAGGTTTAGACAGAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAGCT-CCCACTGCTGTGTAAGTCTGGACAGATGAAACATTAGCTCCGAAGAAACAGAGGGACGTGTTAGGTTGAAGAGA-AAGTGCTGACAGATGACAGGTCTGTGCCCTGGAGTGCC--C--ACCATGTTACCAACATGCAGCTGTGACATCCCAGCACCCATAGGTGCAGTTATGT-TCTAGGGAAGGGAA-AAAAAAGCTCCTACCACGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAACAATGGCAGAAGCTGAGGAACCATCCTTCCCAGTAAAGACGCAAACACAGAATCACCAGCATTC-TCCTCCCTGGCTCATCCCCACTGACAAACAACTCAGAAATGGATGCTGATCTCCGG-------TGTAAGCTCCCGACA-TA-GGAGCA---CTATGGGGGTATATGAAATGCAC-CTCTC---CC-CTCAGA------------------------------------------CACTCATGTAATAC----CCCTGAA--CTCAGGCAGGGAATTCAGCCCCTGGCCTCAATTCCAAGTTTCATGCTCCTGAAAGACATG-CCCCACCCTTCTACTCTTAAAGCAGGAGGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACTTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGTAGACGGCAAAGAGAT-AAACAGGGGA-----------GGTTAGAAAATCAGCAAAGCCACCACTCTTCCCT-GGGGTGAACTTGTCCAGTA---AGAACCTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21108816 1287 -  24206276 CCCTCCCACCCT-GGTGAAGGAAAGGACTAGGCAAGCTGAGACAGAGAGATCCCACC-ATTA-CCA--CAGCT-CTCTATGCCAG-AACACACAGCATGTTCAGGTCAGCAGAGCCAG--------GC-TTTCCT-GGGGGCAGG-----AAGGATGGC-----------------------------AGTTATTGCTTTAAACGCCTACTTAAACCATTAGTTC-AG--TTCA--------------ATGAAGATGGAGCAGGGTGAAAATAGCAGCTGCTCCTTTCTACAGGGAGGGGATCTCATTTCAGACCAGTGAGGAATC-AGATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGG-ACTTCAGAATTAGGTCAGGCAACAACGTAACTGGGCAGGACAGGCAGGCAAGGGAAAGCTTTTCA----AACGCCTTATTTCGAGAGGAAAGGT-GCTGCTTGGGTTCAGGTTTAGACAGAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAGCT-CCCACTGCTGTGTAAGTCTGGACAGATGGAACATTAGCTCCGAAGAAATAGAGGGACGTGTTAGGTTGAAGAGA-AAGTGCCGACAGATGACAGGTCTGTGCCCTGGAGTGCC--C--ACCATGTTACCAACATGCAGCTGTGACATCCCAGCACCCATAGGTGCAGTTATGT-TCTAGGGAAGGGAA-AAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAACAATGGCAGAAGCTGAGGAACCATCCTTCCCAGTAAAGACGCAAACACAGAATCACCAGCATTC-TCCTCCCTGGCTCATCCCCACTGACAAACAACTCAGAAATGGATGCTGATCTCCGG-------TGTAAGCTCCTGACA-TA-GGAGCA---CTATGGGGGTATATGAAATGCAC-CTCTC---CC-CTCAGA------------------------------------------CACTCATGTAATAC----CCCTAAA--CTCAGGTAGGGAATTCAGCCCCTGGCCTCAATTCCAAGTTTCATGCTCCTCAAAGACATG-CCCCACCCTTCTACTCTTAAAGCAGGAGGTCTTAGATACATCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGCAGACGGCAAAGAGAT-AAACAGGGGA-----------GGTTAGAAAATCAGCAAAGCCACCACTCTTCCCT-GGGGTGAACTTGTCCAGTA---AGAACCTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        24005 1272 -   1397330 CCCTCCCACCCT-GGTGAAGGAAAGGACT-GGCAAGCTGAGACAGAGAGATCCCACC-ATTA-CCA--CAGCT-CTCTATGCCAG-AACACACAGCATGTTCAGGTCAGCAGAGCCAG--------GC-TTTCCT-GGGGGCAGG-----AGGGATGGC-----------------------------AGTTATTGCTTTAAACGCCTACTTAAACCATTAGTTC-AG--TTCA--------------ATGAAGATGGAGCAGGGTGAAAATAGCAGCTGCTCCTTTCTACAGGGAGGGGATCTCATTTCAGACCAGTGAGGAATC-AGATGCTTGGTCCTCATTCCTGCCAGCTCCAAAGGG-ACTTCAGAATTAGGTCAGGCAACAACGTAACTGGGCAGGACAGGCAGGCAAGGGAAAGCTTTTCA----AACGCCTTATTTTGAGAGGAAAGGT-GCTGCCTGGGTTCAGGTTTAGACAGAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAGCT-CCCACTGCTGTGTAAGTCTGGACAGATGAAACATTAGCTCCGAAGAAACAGAGGGACGTGTTAGGTTGAAGAGA-AAGTGCTGACAGATGACAGGTCTGTGCCCTGGAGTGCC--C--ACCATGTTACCAACATGCAGCTGTGACATCCCAGCACCCATAGGTGCAGTTATGT-TCTAGGGAAGGGAA-AAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAACAATGGGAGAAGCTGG--------------TTGTAAAGACGCAAACACAGAATCACCAGCATTC-TCCTCCCTGGCTCATCCCCACTGACAAACAACTCAGAAATGGATGCTGATCTCCGG-------TGTAAGCTTCCGACA-TA-GGAGCA---CTATGGGGGTATATGAAATGCAC-CTCTC---CC-CTCAGA------------------------------------------CACTCATGTAATAC----CCCTGAA--CTCAGGCAGGGAATTCAGCCCCTGGCCTCAATTCCAAGTTTCATGCTCCTGAAAGACATG-CCCCACCCTTCTACTCTTAAAGCAGGAGGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGTAGACGGCAAAGAGAT-AAACAGGGGA-----------GGTTAGAAAATCAGCAAAGCCACCACTCTTCCCT-GGGGTGAACTTGTCCAGTA---AGAACCTG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        47308 1283 -   1784207 CCCTCCCACCCT-GGTGAAGGAAAGGACT-GGCAAGCTGAGACAGAGAGATCCCACC-ATTACCCA--CAGCT-CTCTATGCCAG-AACACACAGCATGTTCAGGTCAGCGGAGCCAG--------GC-TTTCCT-GGGGGCAGG-----AAGGATGGC-----------------------------AGTTATTGCTTTAAATGCCTACTTAAACCATTAGTTC-AG--TTCA--------------ATAAAGATGGAGCAGGGTGAAAATAGCAGCTGCTCCTTTCTACAGGGAAGGGATCTCATTTCAGACCAGTGAGGAATT-AGATGCTTGGTCCTCTTTCCTGCCAACTCCAAAGGG-ACTTCAGAATTAGGTCAGGCAACAATGTAACTGGGCAGGACAGGCAGGCAAGGGAAAGCTTTTCA----AACACCTTATTTTGAGAGGAAAGGT-GCTGCTTGGGTTCAGGTTTAGAGAGAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAGCT-CCCACTGCTGTGTAAGTCTGGACAGATGGAACATTAGCTCAGAAGAAATAGAGGGACGTGTTAGGTTGAAGAGA-AAGTGCTGACAGATGACAGGTCTGTGCCCTGGAGTGCC--C--ACCATGTTACCAACATGCAGCTGTGACATCCCAGCACCCACAGGTGCAGTTATGT-TCTAGGGAAGGGAA-AAAAAAACTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAACACACGGAAGGTGTTAACTAATCCAGCTGCAAAG----AGAAAACAATGGCAGAAGCTGAGGAACCATCCTTCCCAGTAAAGACGCAAACACAGAATCACCAGCGTTC-TCTTCCCTGGCTCATCCCCACTGACAAACAACTCAGAAATGGATGCTGATCTCTGG-------TGTAAGCTCCCAACA-TA-GGAGCA---CTATGGGGGTCTACGAAATGCAC-CTCTC---CC-CTCAGA------------------------------------------CATTCATGTAATAC----CCCTGAG--CTCAGGCAGGGGATTCAACCCCTGGCCTCAATTCCAAGTTTCATGCTCCTGAAAGACATG-CCCCACCCTTCTACTCTTAAAGCAGGAGGTCTTAGACACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTCGGTAGACAGCAAAGAGAT-AAACAGGGGA-----------GGTTAGAAAATCAGCAAAGCCACCACTCTTCCCT-GGGGTAAACTTGTCCAGTA---AGAACCTG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22243862 1295 + 158406734 CCCTCCCACCCTGGGTAAAGGAAAGGATT-GGCAAGCTGGGACAGAG-GATCCCACC-ATTA-CCA--CAGCTACTCTCTCCCAG-AATACACAGCATGTTCAGGTCAGCAGAGCCAA--------GC-CTTCCT-GGGGGCAGG-----AAGGATGGC-----------------------------AGGTATTGCTTTAAACACCTACTTAAACCACTGGTTC-AG--TTCA--------------ATGAAGATGGGGCAGGGTGAAAATAGCACCTGCTCCTTTCTACAGGGAAGGGATCTCATTTCAGACCAGTGAGGAATC-AGATGCTTGATCCTCATTCCTGCCAACTCCAAAGGG-ACTTCAGAATTAGGTCAGGCAACAATGTAACTGGGCAGGACAGGCAGTCAAGGGAAAGCTTTTCA----AATGCCTTATTTTGAGAGGAAAGGT-GCTGCTAGGGTTCAGGTTTAGAGAGAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAGCT-CCCATTGCTGTGTAAGTCTGGACAGACGGAACATTAGTTCAGAAGAAACAGA-GGACTTGTTAGGTTGAAGA-A-AAGAGCTGACAGCTGACAGGTCTGTGCCCTGGAGTGCC--C--ACCATGTTGCCAGCATGCAGCTGTGATATCCCAGCACCCCTAGGTGCAGTTATGT-ACTAGGGAAGGGAA-AAAAAAGCTCCTACCATGTTTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAAGAATGGCAGAAGCTGACAAACCATCCTCCCCAGTAAAGACACAAACACAGAATCACCAGCATTC-TCCTTCCTGGCACATCTCCCATGACAGACAACTCAGAAATGAATGCTCATCTCCAGTGACAAGTGTAAGCTCCAGAGA----GGAGCA---CTATGGGGATCTATGAAATACAC-CTCTC---AC-CTCAGA------------------------------------------CGCTCATGTAATAATGTACTCTGAGTTCTCAGTCAGAG-ATTCAGCCCCTGGCCTC-ATTCCAAGTTTCATGCTCCTGAAAGACATG-CCCCACCCTTCAACTCTTGAAGCAGAAAGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTACATTCACAGCTTTGGTAAAAGACAAAGAGGG-AAACAGGGAA----------GGGTTAGAGAATCAACAAAGTCACCATCATTCCCT-AAGGTGAACTTGTCCAGCA---AGAACCTG
i calJac3.chr6              C 0 I 306
s saiBol1.JH378108           50479659 1291 +  54856640 CCCTCCCACCCTGGGTAAAGGAAAGGATT-GGCAAGCTGGGACAGAG-GATTCCACC-ATTA-CCA---AGCT-CTCTATCCC-G-AGTACACAGCATGTTCAGGTCAGTAGAGCCAA--------GC-CTTCCT-GGGGGCAGG-----AAGGATGGC-----------------------------AGGTATTGCTTTAAACACCTACTTAAACCATTGGTTC-AG--TTCA--------------ATGAAGATGGGGCAGGGTGAAAATAGCACCTGCTCCTTTCTACAGGGAAGGGATCTCATTTCAGACCAGTGAGGAATC-AGATGCTTGGTCCTCATTCCTGCCAACTCTAAAGGG-ACTTCAGAATTAGGTCAGGCAACAATGTAACTGGGCAGGACAGGCAGGCAAGGGAAAGCTTTTCA----AACGCCTTATTTTGAGAGGAAAGGT-GCTGCTAGGGTTCAGGTTTAGAGAGAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAGCT-CCCACTGCTGTGTAAGTCTGGACAGATGGAACATTAGTTCAGAAGAAACAGAGGGACTTGTTAGGTTGAAGA-A-AAGAGCTGACAGCTGACAGGTCTGTGCCCTGGAGTGCC--C--ACCATGTGGCCAGCATGCAGCTGTGACATCCCAGCACCCCTAGGTGCAGTTATGT-ACTAGGGAAGGGAA-AAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAAGAATGGCAGAAGCTGAGGAACCATCCTCCCCAGTAAAGACACAAACACAGAATCACCAGCATTC-TCCTTCCTGGCTCATCCCCCATGACAAACAACTCAGAAATGAATGCCGATCTCCAGTGACAACTGTAAACTCCAGAGA----GAAGCA---CTATGGGGATCTATGAAATGTAC-CTCTC---CC-CTCAGA------------------------------------------CGCTCATGTAATATTGTACTCTGAGTTCTCAGTCAGAG-ATTCAGCCCCTGGCCTC-ATTCCAAGTTTCATGCTCCTGAAAGACATG-CCCCACCCTTCAACTCTCGAGGCAGAAAG--TTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGTAGAAGACAAGGAGGG-AAACAGGGAG----------GGGTTAAAGAATCAACAAAGTCACCACCCTTCCGT-AAGGTGAACTTGTCCAGCA---AGAACCTG
i saiBol1.JH378108          C 0 I 276
s cebCap1.NW_016107610v1       623301 1293 -   2910086 CCCTCCCACCCTGGGTAAAGGAAAGGATT-GGCAAGCTGGGACAGAG-GATCCCACC-ATTA-CCA---AGCT-CTCTATCCCAG-AATACACAGCATGTTCAGGTCAGCAGAGCCAA--------GC-CTTCCT--GGGGCAGG-----AAGGATGGC-----------------------------AGGTATTGCTTTAAACACCTACTTAAACCATTGGTTC-AG--TTCA--------------ATGAAGATGGGGCAGGGTGAAAATAGCACCTGCTCCTTTCTACAGGGAAGGGATCTCATTTCAGACCAGTGAGGAATC-AGATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGG-ACTTCAGAATTAGGTCAGGCAACAACGTAACTGGGCAGGACAAGCAGGCAAGGGAAAGCTTTTCA----AACGCCTTATTTTGAGAGGAAAGGT-GCTCCTAGGGTTCAGGTTTAGAGAGAAGCGTACAAGGAAG-----------GGGTTTCAGA-TGCAGCT-CCCACTGCTGTGTAAGTCTGGACAGACGGAACATTAGTTCAGAAGAAACAGAGGGACTTGTTAGGTTGAAGA-A-AAGAGCTGACAGCTGACAGGTCTGTGCCCTAGAGTGCC--C--ACCATGTTGCCAGCATGCAGCTGTGACATCCCAGCACCCCTAGGTGCAGTTATGT-ACTAAGGAAGGGAA-AAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAATTAATCCAGCTGCAAAGAGACAGAAAAGAATGGCAGAAGCTGAGGAACCATCCTCCTCAGTAAAGACCCAAACACAGAATCACCAGCATTC-TCCTTCCTGGCTCATCCCCCATGACAAACAACTCAGGAATGAATGCTGATCTCCAGTGACAAGTGTAAGCTCCAGAGA----GGAGCA---CTATGGCGATCTATGAAATGCAC-CTCTC---CT-CTCAGA------------------------------------------CGCTCATGTAATAGTGTACTCTGAGTTCTCAGTCAGAG-ATTCAGCCCCTGGCCTC-ATTCCAAGTTTCATGCTCCTGAAAGACATG-CCCCACCCTTCAACTCTTGAAGCAGAAAGTCTTAAAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGTAGAAGCCAAAGAGGG-AAACAGGGAA----------GGGTTAGAGAATCAACAAAGTCACCACCCTTCCCT-AAGGTGAACTTGTCCAGCA---AGAACCTG
i cebCap1.NW_016107610v1    C 0 I 295
s aotNan1.NW_018505940v1     40651395 1294 +  42888418 CCCTCCCACCCTGGGTAAAGGAAAGGATT-GGCAAGCT-GGACAGAG-GATCCCACA-ATTA-CCA--CAGCT-CTCTATCCCAG-AATACACAGCATGTTCAGGTCAGCAGAGCCAA--------GC-CTTCCT-GGGGGCAGG-----AAGGATGGC-----------------------------AGGTATTGCTTTAAACACCTACTTAAACCGTTGGTTC-AG--TTCA--------------ATGAAGATGGGGCAAGGTGAAAATAGCACCTGCTCCTTTCTACAGGGAAGGGATCTCATTTCAGACCAGTGAGGAATC-AGATGCTTGGTCCTCATTCCTGCCAACTCCAAAGGG-ACTTCAGAATTAGGTCAGGCAACAACGTAACTGGGCGGGACAGGCAGGCAAGGGAAAGGCTTTCA----AACGCCTTATTTTGAGAGGAAAGGT-GCTGCTAGGGTTCAGGTTTAGAGAGAAGTGTACAAGGAAG-----------GGGTTTCAGA-GGCAGCT-CCCACTGCTGTGTAAGTCTGGACAGATGGAACATTAGTTTGGAAGAAACAGAGGGACTTGTGAGGTTGAAGT-A-AAGAGCTGATAGCTGACAGGTCTGTGCCCTGGAGTGCC--C--ACCATGTTGCCAGCATGCAGCTGTGACATCCCAGCACCCCTAGGTGCAGTTATGT-ACTAGGGAAGGGAA-AAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACTAATCCAGCTGCAAAGAGACAGAAAAGAATGGCAGAAGCTGAGGAACCATCCTCCCCAGTAAAGACACAAACACAGAATCACCAGCATTC-TCCTTCCTGGCTCATCCCCCATGACAAACAACTCAGAAATGAATGCTGATCTCCAGTGACAAGTGTAAGCTCCAGAGA----GGAGCA---CTATGGGGATCTATGAAATGCAC-CTCTC---CC-CTCAGA------------------------------------------CGCTCATGTAATAGTGTACTCTGAGTTCTCAGTCAGAG-ATTCAGCCCCTGGCCTC-ATTCCAAGTTTCATGCTCCTGAAAGACATG-CCCCACCCTTCAACTCTCGAAGCAGAAAGTCTTAGAGACAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGAAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGAGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGCAGAAGACAAAGAGGG-AAACAGGGAA----------AGGTTAGAGAATCAACAAAGTCACCACCCTTCCCT-AAGGTGAACTTGTCCAGCA---AGAACCTG
i aotNan1.NW_018505940v1    C 0 I 307
s micMur3.chr9              113275275 1292 + 116334831 ATCTCCCACCCT-AGTATGGGAAAGGGCT-GGCAAGCCGGGACAGAG-GGTCCCACC-ATGA-CCA--CTGCT-CTCCATCCCAG-AACACACAGCAAACTCAAGTCAGCAGAGGCAG--------GCATTTCCT-GAGGTCAGG-----AGAA-TGGC-----------------------------AGGTACCGCTTTAAAAGCCTAGTTAAACCACAGGTCC-AG--TTCA--------------CCGAAGATGGGGCACAGTGAAAATAGCACCTGCTCCTTTCTACAGGGAAGGGATCTCATTTCAGACCAGTGAGGAATC-AGATTGTTGGTCCTTGTTCCTGCCAACTCCAAAGGG-ATCTCAGAATTAGGTCAGGCAACAGCGTAACTGGGCAGGAAAGGCAGGCAAGGGAAAGCTTTTCA----GTTGCCTCGTTTTGAGAGGAAAGGC-CCTGCTGGGGTTCAGGTTTAGAGGGAAGCGTACAAGGAAG-----------GGATATCGGA-AGCAGCT-CCTGTTGCTGTG-AAGTATGGTCAGAGGGAACGTTAGC-TGGAAGAATCAGAAGGGTGTGCTCAGTTGAAGAGA-AAGTGCTGATGGCTGAAAGGTC-GTGCCCTGGAGTGCC--C--CCCACATTACCAGCATGCGTCTGTGACATCCCAGCACCCCTTGGTGCAGTTATGT-ACTAGCGAGGGGAATAAAAAAGCTCCTACCACGTTTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAACCAAAAACACGGAAGGTATTAACCAATCCAGCTGCAAAAA-AGAGAAAAG-GCAGTGGAAGCTGAGGCACCATCCTCCCCAGTAAAGACACAAGCCCAGGATCGCCAGTGCGC-T-CCCCCTGGCTCATCCCCCTTGATGAACAAATCAGAGTGGACCTCTGGTCTCAGGTGACAAGTGTAAGGACCAGACA-CA-AAGTCA---CCACAGGAGTCTATGAAGTGCAC-TTCTC---CC-CTCCGC------------------------------------------CG---CTGTCATA-----CTCTGAG--CTCAGGTAGAG-ATTCAGCCCCTGCCCTCAAATCCAAGTTTCATGCTCCTGAAAGACATG-CCCCA-CCGTCACCTCTGGAAGCAGGCGGTCTCGGAGGTAGCTCACCTTCCGTAATATCCCAAGGAACACCTCCTAGGAACACCTTGCAAGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGTAGAAGACAAAGGGAGAAAAAAGGGGAAGGGAGGTGCGTATCAGAGAATGAATAAAGCCTCCACCCTTCCCT--AGGTGAACTTGTTCAGAA---AGAATTAG
i micMur3.chr9              I 21 C 0
s proCoq1.NW_012142813v1        20382 1291 +     80520 ATCTCCCACCCT-AGTACGGGAAAGGGCT-GGCAAGCCGGGACAGAG-GATCCCGAC-ACAA-CCA--CTGCT-CTCCATCCCAG-AACACAGAGCAAGCTCAAGTGAGCAGAGGCAG--------GTGTTTCCT-GGGGGCAGG-----AGGG-TGGC-----------------------------AGGTACTGCTTTAAAAGCCTAGTTAAACCACAGGTCC-AG--TTCA--------------CCGAAGATGGGGCAGAGTGAAAATAGCACCTGCTCCTTTCTACAGGGAAGGGATCTCATTTCAGACCAGTGAGGAATC-AGATTCTTGGTCCTCGTTCCTGCCAACTCCAAAGGG-ATCTCAGAATTAGGTCAGGCAACAGTGTAACTGGACAGGAAAGGCAGGCCAGGGAAAGCTTTTCA----GTTGCCTCATTTTGAGAGGAAAGGC-CCTGCTGGGGTTCGGGTTTAGAGGGAAGCGTACAAGGAAA-----------GGGTATCGGA-AGCAGCT-CCTGTTGCTGTGTGAGTCTGGACAGATGGAACATTAGCTTGGAAGAAGCAGAAGGGTGTGCTCGGTTGAAGAGA-AAGTGCCGATGGCTGAAAGGTCTGTGCCCTGGAGTGCG--C--ACCATGTTACCAGCATGCATCTGTGACATCCCAGCACCCCTTGGTGCAGTTATGT-ACTAGGGAGGGGAA-AAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAACCAAAAACACGGAAGGTATTAACCAATCCAGCTGCAAAAAGAGAGAAAAG-GTGGCAGAAGCTGAGGTACCATCCTCCCCAGTAAAGACACAAGCACAGGATCACCTGTGTGC-T--CCCCTGGCTCATCCCCCTTGCTGAACAACTCAGAATGGACCTCTGGTCTCAGGTGACAAGTGTAAGGACCAGACA-CA-GAAGCA---ATACAGGAGTCTATGAAATGCAC-TTCTC---CC-CTCAGC------------------------------------------TGCTCCTGTCATA-----CCTGGAG--CTCAGGTAGAA-ATTCAGCCCCTGCCCTCAAATCCAAGTTTCATGCTCCTGAAAGACATG-CCCCA-CCCTCAACTCCTGAAGCA---GGTCTTGGAGGTAGCTCACCTTCTGTAATATCCCAAGGAACACCTCCTAGGAACACCTTGCAGGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAAGTGGCTTCATTCACAGCTTTGGTAGAAGACAAAGAG---AAAAAGGGAGAGGGAGGTGCGTGTCAGAGAATGAATAAAGCCTCCACCGTTCCCT--GGGTGAACTTGTTCAGAA---AGAATTAG
i proCoq1.NW_012142813v1    I 21 C 0
s otoGar3.GL873530             637947 1262 -  36342412 CTCTCCCATGCT-GACCGGG---AGGACT-GACAAGCTGGGACACAG-GACCCCACC-ATTA-CCA--CAGCT-CTC--TCCCAGAAACACAAAGCAAGCTGAGGTCAGCAAAGCCAG--------GCACTTCTT-GAGGGTGGG-----AGGGATGGC-----------------------------AGGTACTGCTTTAAAAGCCTAGTTAAACCACAGATTC-AG--TTCA--------------GTGAAGATGGGGCAGAGTGAAAATAGCACCTGCTCCTTTCTACTGGGAAGGGATCTCATTTCAGACCAGTAAGGAATCAAGATTCTTGGTCCTCTTTCCTGCCAACTCCAAAGGG-ATCTCAGAATTAGGTCGGGCAACAAGGTAACTCAGCAGGAAAAGCAGGCAAGGGAAAG----------------CTCATTTTGAGAGGAGAGGC-ACTGCTAGGGTTCAGGTTTAGAGGGTA-TGTCCAAGGATG-----------GGGTTTCAGA-GGCAGCT-CCCATGGCTGTGTAAGTTTGGACAGGTAGAACATTAGTTTGGAAGAAACAGAAGAATGTGCTCCTTTGAAGA-A-AAGTGCTGAT-GCTGAAAGGTCTGTGCCCTGAAGCACC--C--GCCACATTACCGGCATGCGTCTGTGACATTCCAGCACTCCTTGGTGCATTTATGT-GCTAGGGAGGAGAAAAAAAGAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACGGAAGGTGTTAACCAATCCAGCTGCAAAGAGAGAGAGA------GCAAAAGCTGAGGTGCCACCCTCTCCAGTGCAGACACAAGCACAGGGTCATCAGTGCTC-TCCCCCCCAGCT--GCCCCTCTGGTGAGTAACTCAGAATTGACTTCTGGTCTCAGGTGAGAAGTGTATGGACCAGACA-CA-GAAGCA---ATACAGGAATCTATGAAATGCAC-TTCTC---CC-CTCAGC------------------------------------------TG-CCCCACCATA-----CCCTGAG--CTCAGGCAGAG-ATTCAGCCCCTG---------------GTCATGCTCCTGAAAGATAGACCCCCA-CCTTCAACTCTTGAAGCAAGAAGTCATAGAGGTAGCTCACCTTCCGTAATATCCCAAGGAACGCCTCCTAGAAACACCTTGCAAGAGTATATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACAGGTGGCTTCATTCACAGCTTTGGAAGAAGGCCAAGAGAG-AAAGGGGGGGTGGGAGGAGGGTGTCAGACAATCAATAACACCACCACCCTTCTCCTGGGGTGACCTTGCTCAGAA---ATAATTGG
i otoGar3.GL873530          I 1 C 0
s mm10.chr7                  81356260 1252 + 145441459 ATATCAAATTTC-ATTAAGGGAAGGTACT-GTTAAGCTGGGACAGAA-GACCCCACCTATGA-CCATATAGCT-GTCTACCCCAG-AACACAGAGTATGCCCAGGTCAACAGAGTCAGGAAAAATAGC-AGGTTT-ATGGTCAGTTTGCCAGGGGATGC-----------------------------AGGTACTGCTTTAAAAGCCTAACTAAGCCACTGGTTCAAG--TTCA--------------GTGAAGATGGGGCAGAGTGAAAATAGCACCTGCTTCTTTCTACAGGGCA-GGATCTCATTTTAGACCAGTGAGGAATC-AGATACTTGGTCCACATTCCTGCCAACTGCAAAGGGAATCTCAGAACTGGGTCACACAACAAC-CCCTGGGGCAGCAGAGGCAGGCAAAAGAACACTTCTGAAGTGAACACCTTA-TTCAAGAGGGAAGGC-ACCGGTGGGGTTTAGGTTCAGAGGGAGGTGCTCAGGAAGG-----------GG---TCAGATGGTATCTCCCCACATCACTGCAGATTTGGACAGATGGA------------------CAAAGGGGTGTGCAAAACAGAAGAGG-GTGTGTTGA------------CTTTACCCTGGAGTGCC--T--ACT---TTACCAGCATGCGTCTGTGACAGCCCAGCAACACATGGTGCAG-TACAT-GTGAGGGAGAGGAA-AAAAAGTTTCCTACCACGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAGAGAGCCAAAAACACGGAAGGTGTTAACCAATCCAGCTGCACAG--GTGGGGAAGAACAACAGAAACCAATACACAGTC-TACTCAGGAAAGAC----AAACAGAATCA-CAGTACTC--CTCCCAAGGCTCACTGCTCCTGAAAAACAACTCAGAACTGACTGCTGCTCTCCTA-------CGTAAGC-----ACA-CACAGCGCT---CTACAGAGGCTTATGAAATGCACACTCACGCTCT-CTCAGC------------------------------------------TGCTC-TGTAACA-----CCCTGGG--CTGAGGCAGAG-GTTCAGGCTCTAAACTGGACGCTAGGGTTTACACTCTTGAAAGATATG-CTCCA-CCTTCAACTCATAAG-----AGATTTCAGAGGCAGCTCACCTTCTGTAATATCCCAAGGAACGCCTCCTAGGAACACCTTGCATGAGTAGATGGGGTTCTTATAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTACACGTAGCTTCATTCACAGCTGTAGGAGAAAACAAAGCAAA-ACCCAAGGGT-------------TCAGACAATCAACAAAGTCACTACCCTCCTCT-GAAATGGACTTGTTGGGGAAATAGAACATT
i mm10.chr7                 C 0 I 5
s canFam3.chr3               54413458 1256 +  91889043 ATCTCCCACCCA-AGTG-AGGAAGGGACG-AGCAAAGTGGGACACAG-GATCCCATC-ATAA-GCA-CCAGCA-TTCTATCCCAA-AACACACAGCATGTTCTGGTCAGCAGAGCCAG--------GC-TGTCCT--GGGGCAGG-----GAGG-------------------------------------TATTGCTTTAAAAGCCTAGTTAGACCACTGGTTC-AG--TTCATCAGAACATTTCTGGTGAAGATGGGGCAGAGTGAAAATAGCACCTGCTCCTTTCTACAGGGAAGGGATCTCATTTCAGACCAGTGAGGAATC-AGATGCTTGGTCCTCATTCCTACCAACTCCAAAGGG-ATCTCAGAATTAGGTCAGACAACAATGTAACCGGGCAAGAAAGGCAGGCAAAGGAAAGCTTTTCA----AATGCCTCATTTTGAGAGGAAAAGTAGCTGCTGGGGTTCAGGTTTGGAGGGAAATGCACAAGGAATTTTCACACAGCAAGATTCATA-GGTGGCT-CTGACTGCAATGTAAGTTTGAACAGATGGAACTTTAGCTCAGAAGCAGCAGAAGGATGTGCTAGGTTGGAGAGAGAAGTGCCGACAGCTGAAAGTTCTGTGCTCTGGAGTGCC--CAAACCAGGTTACCAGCATGCAGCTGGGACATCCCAGCATCCCTCAGTGCAATTACAT-ACTAGGGAGGGGAA-AAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAGCCAAAAACACAGAAGGTGTTAACCAATCCAACTGCAGAGAGATGGAAAAGAATGGCAGAAACTGATGGACCTCCATCCCCAG-GAAGGCACAAGCACAGGACCACCAGTGTCC-TTCTCCCA---------------------AACTCAGAATTGACCTTGGGTCCCAGGTGACAAGTGTAAGCACCAGAAAACA-GAAGCAATGATATGGGTGTCTACAGAATGTAC-CCCGC---CCTCTCACT------------------------------------------GACTCCTGCAAAG-----CCCTGTG--CTTGGGCACAG-CTTCAG-CCCTGGCCTTAAGTCCAAGTTTAATGCTCTTGAGAGACATG-CCCCA-CCTTCAGTGCTC-AAGCAGTAGGTCTCAGAGGCAGCTCACCTTCCGTAATATCCCAGGGAACACCTCCCAGGAACACCTTGCAAGAGTAGATGGGGTTCTTGTAGTTCCGCGGTGGAAGCTGGCCACTCCAGGTATAGGTGGCTTCATTCACAGCTTTGG-AGACGACAAAGAGAG-AAATGGGTCA-----------G----------------------------------AGGATGAACTTATCCAGGA---AAAACTAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1803290 1286 +   3943991 ATGCCTTGTCCT-AATAAGGGAAGGAACT-GGCAAACTGGGACAGAG-GATCCCACT-GCTA-CCACACAGCT-CTCTATCCCAG-AACACAGAGCATGTTCAGGTCAGCAGAGCCAG--------GC-TGTCCTAGAGGGTAGG-----AGGGTTGGCAAGTAAACAGCCAGTTTGCCAGGATACAGAGGTACTGCTTTAAGAGTCTAGTTAAAACATGGGAAC-AATTTTCA--------------ATGAAGATGTGGCAGAGTGAAAATAGCACCTGCTCCTTTCTACAGGGAAAGGATCTCATTTCAGACCAGTGAGGAATCAAGATGCTTGGTCCTCATTCCTACCAATTCCAAAGGG-ATCTCAGAATCAGGTC-GGCAACAACTTATCTAGACAGGAAAGACAG-CAAGGGCAAGCTTTCCA----AATGCCTCATTTTGAGACAAAAGGT-GATTCCAGGTTTCAGGTTTGGAGGGAAGCAAACAAGGAAG-----------GGGTTTCAGA-GGCAGCT-CCCACTGCAGTGTAAGTTTGGAGAGATGGAAAATTAGCACAAAAGAAACAGAGGGATGTGATAGGTTGAAGAGA-AAGTGCTGACAGCTAAAAGGTCTGTGCTCTGGAGTGCCAAT--ACCACATTACCAGCATGCAGCTGTGACTTCCCAGCACCCCTCAGTGCAATTACGTAACTATGGAGGGGGA-AAAAAAGCTCCTACCATGTCTTTATTACCTTTAGGCATATTACCTTTGGGAGGACACCGGGGGTGCTTGCCATCCTTACCAGGCCACTCCACACTCAAAGAACCAAATACACGGAAGGTGTTAACCAATCCAGCTGTAAAGAGACAGAAAAGAATGGCAGAGGCTGAAG-------TTTGGCAAT----------------TATCACCAAGGTTTACCCCTCCCAGTTTATCCCCCTTGACAAACAACTCAGGGTTGACCCTTGGTCTCAGGAGACAAGTGCAAGCATCAGACA-CA-GAAGCA---CTA-GGGAGTCTCTGAAATG----CTGTC---TC-TTCAGC------------------------------------------TTCTCTTGTAATA------CCTGTG--CTCAGGCA----GTTCAGTCCCTGGCCTAGGGCCCAAGTTTCACACTCCTGAAAGACATG-ACCCA-GCTTCAACCTTTGAAGCAGGAGGTCTCAGAGGCAGCTCACCTTCCGTAATATCCCAGGGAACACCTCCTAGGAACACCTTGCAAGAGTAGATGGGGTTCTTGTAGTTCCGGGGAGGAAGCTGGCCACTCCAGGTATAGGTGGCTTCATTCACAGCTTTGGGAGAAGACAACAAAAG-AAA---GAGA-----------GGTCAGAG--TCAACAAAG----AACTATTCTCT-AAGGTGATCTTACCCAGGA---AAAACTTG
i dasNov3.JH570731          C 0 C 0

a score=570900.000000
s hg38.chr15_KI270850v1_alt    343188 44 +    430880 ACTGGCCACAATC---CTT-GCCCAGATGCCTGAGAGAATATCCATGA
s panTro5.chr15              63496563 44 +  83230942 ACTGGCCACAATC---CTT-GCCCAGATGCCTGAGAGAATATCCATGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80453702 44 +  99763055 ACTGGCCACAATC---CTT-GCCCAGATGCCTGAGAGAATATCCATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        53862 44 -   1709092 ACTGGCCACAATC---CTT-GCCCAGATGCCTGAGAGAATATCCATGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17205670 44 - 121039945 ACTGGCCACAGTC---CTT-GCCCAGATGCCTGAGAGAATATCCATGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60894203 44 + 169600520 ACTGGCCACAATC---CTT-GCCCAGATGCCTGAGAGAATATCCATGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108420952 44 - 171882078 ACTGGCCACAATC---CCT-GCCCAGATGCCTGAGAGAATATCCATGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        31400 44 -   2311642 ACTGGCCACAATC---CTT-GCCCAGATGCCTGAGAGAATATCCATGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        29565 44 -   1987038 ACTGGCCACAATC---CTT-GCCCAGATGCCTGAGAGAATATCCATGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21110103 44 -  24206276 ACTGGCCACAATC---CTT-GCCCAGATGCCTGAGAGAATATCCACGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        25277 44 -   1397330 ACTGGCCACAATC---CTT-GCCCAGATGCCTGAGAGAATATCCATGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        48591 44 -   1784207 ACTGGCCACAATC---CTT-GCCCAGATGCCTGAGAGAATATCCATGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22245463 44 + 158406734 ACTGGCCACAATC---CTT-GCCCAGATGCCTGAGAGAATATCCATGA
i calJac3.chr6              I 306 C 0
s cebCap1.NW_016107610v1       624889 44 -   2910086 ACTGGCTACAGTC---CTT-GCCCAGATGCCTGAGAGAATATCCATGA
i cebCap1.NW_016107610v1    I 295 C 0
s aotNan1.NW_018505940v1     40652996 44 +  42888418 ACTGGCCACAGTC---ATT-GCCCAGATGCCTGAGAGAATATCCACGA
i aotNan1.NW_018505940v1    I 307 C 0
s micMur3.chr9              113276567 47 + 116334831 ACTGCCTATGAGCTTATTA-GCCTGGCTGCTTGAGGGAACAGCCATGA
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        21673 43 +     80520 ACTGGCTATGAAC---TTA-GCCTGGCTGCCTGA-GGAACAGCCATGA
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             639209 40 -  36342412 ACTA-CGATG------TTA-GCCCGGTTGTCTGGAAGAATAGCCATGA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81357517 30 + 145441459 -------ATGGGC---TT---CCCAGGAG-----AAGAATATCCATGA
i mm10.chr7                 I 5 C 0
s canFam3.chr3               54414714 45 +  91889043 AAAGACCATGGTC---CCTGGCCTGGCTGCCTGGGACAACATCCATGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1804576 44 +   3943991 ACTGGCCACAGTC---CTA-ACCCAGTTGCCTGGGAGAATAGTCACAA
i dasNov3.JH570731          C 0 C 0
e saiBol1.JH378108           50480950 276 +  54856640 I

a score=5714426.000000
s hg38.chr15_KI270850v1_alt    343232 373 +    430880 TTATTCTGAAAAGCAAGAAAT-C-TATG-TCTCACCAATCCACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATTGAAAGGAATACCAAACCAGATG-----TGTAGGGTAAAAAT----TTACACCCCATGTTATTTTCAAACATTCAACTAATATGC-TAAC----------------CACAAAGCAGTTTTATCCTGTTATTGCTTACAG---TACT--AATTCA------TAATTACTTGAAAATAAACATAGCA-------ATACAACATCTTGCAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AATGTTCAAATGAGAAACATTCTATTCTGTTTCCTTGTCTTGGCTCTGAACTCATGAATCACAGAAGTTAGGACACTGCCAATAAAAACCA
s panTro5.chr15              63496607 373 +  83230942 TTATTCTGAAAAGCAAGAAAT-C-TATG-TCTCACCAATCCACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATTGAAAGGAATACCAAACCAGATG-----TGTAGGGTAAAAAT----TTACACCCCATGTTATTTTCAAACATTCAACTAATATGC-TAAC----------------CACAAAGCAGTTTTATCCTGTTATTGCTTACAG---TACT--AATTCA------TAATTACTTGAAAATAAACAGAGCA-------ATACAACATCTTGCAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AATGTTCAAATGAGAAACATTCTATTCTGTTTCCTTGTCTTGGCTCTGAACTCATGAATCACAGAAGTTAGGACACTGCCAATAAAAACCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80453746 373 +  99763055 TTATTCTGAAAAGCAAGAAAT-C-TATG-TCTCACCAATCCACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATTGAAAGGAATACCAAACCAGATG-----TGTAGGGTAAAAAT----TTACACCCCATGTTATTTTCAAACATTCAACTAATATGC-TAAC----------------CACAAAGCAGTTTTATCCTGTTATTGCTTACAG---TACT--AATTCA------TAATTACTTGAAAATAAACAGAGCA-------ATACAACATCTTGCAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AATGTTCAAATGAGAAACATTCTATTCTGTTTCCTTGTCTTGGCTCTGAACTCATGAATCACAGAAGTTAGGACACTGCCAATAAAAACCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        53906 372 -   1709092 TTATTCTG-AAAGCAAGAAAT-C-TATG-TCTCACCAATCCACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATTGAAAGGAATACCAAACCAGATG-----TGTAGGGTAAAAAT----TTATACCCCATGTTATTTTCAAACATTCAACTAATATGC-TAAC----------------CACAAAGCAGTTTTATCCTGTTATTGCCTACAG---TACT--AATTCA------TAATTACTTGAAAATAAACAGAGCA-------ATACAACATCTTGCAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AATGTTCAAATGAGAAACATTCTATTCTGTTTCCTTGTCTTGGCTCTGAACTCATGAATCACAGAAGTTAGGACACTGCCAATAAAAACCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17205714 373 - 121039945 TTATTCTGAAAAGCAAGAAAC-C-TATG-TCTCACCAATCTACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATTGAAAGGAATACCAAACCAGATG-----TGTAGGGTAAAAAT----TTACACCCCATGTTATTTTCAAACATTCAACTAATATGC-TAAC----------------CACAAAGCAGTTTTATCTTGTTATTGCTTACAG---CACT--AATTCA------TAATTACTTGAAAATAAACAGAGCA-------ATACAACATCTTACAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AATGTTCAAATGAGAAACATTCTATTCTGTTTCTCTGTCTTGGCTCTGAACTCATGAATCACAGAAGTTAGGACACTGCCAATAAAAACCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60894247 373 + 169600520 TTATTCCGAAAAGCAAGAAAC-C-TATG-TCTCACCAATCCACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATGGAAAGGAATGCCAAGCCAGATG-----TGTAGGGTAAAAAT----TTACACCCCATGTTATTTTCAAACATTCAACTAATATGC-TAAC----------------CACAAAGCAGTTTTATC---TTATTGCTTACAGTACTACT--AATTCA------TAATTACTTGAAAATAAACAGAGCA-------ATAGAACATCTTACAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AATGTTCAAATGAGAAACATTCTATTCTGTTTCCCTGTCTTGGTTCTGAACTCATTAATCACAGAAGTTAGGACACTGCCAATAAAAACCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108420996 373 - 171882078 TTATTCCGAAAAGCAAGAAAC-C-TATG-TCTCACCAATCCACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATGGAAAGGAATGCCAAGCCAGATG-----TGTAGGGTAAAAAT----TTACACCCCATGTTATTTTCAAACATTCAACTAATATGC-TAAC----------------CACAAAGCAGTTTTATC---TTATTGCTTACAGTACTACT--AATTCA------TAATTACTTGAAAATAAACAGAGCA-------ATAGAACATCTTACAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AATGTTCAAATTAGAAACATTCTATTCTGTTTCCCTGTCTTGGTTCTGAACTCATTAATCACAGAAGTTAGGACACTGCCAATAAAAACCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        31444 373 -   2311642 TTATTCCGAAAAGCAAGAAAC-C-TATG-TCTCACCAATCCACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATGGAAAGGAATGCCAAGCCAGATG-----TGTAGGGTAAAAAT----TTACACCCCATGTTATTTTCAAACATTCAACTAATATGC-TAAC----------------CACAAAGCAGTTTTATC---TTATTGCTTACAGTACTACT--AATTCA------TAATTACTTGAAAATAAACAGAGCA-------ATAGAACATCTTACAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AATGTTCAAATGAGAAACATTCTATTCTGTTTCCCTGTCTTGGTTCTGAACTCATTAATCACAGAAGTTAGGACACTGCCAATAAAAACCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        29609 373 -   1987038 TTATTCCGAAAAGCAAGAAAC-C-TATG-TCTCACCAATCCACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATGGAAAGGAATGCCAAGCCAGATG-----TGTAGGGTAAAAAT----TTACACCCCATGTTATTTTCAAACATTCAACTAATATGC-TAAC----------------CACAAAGCAGTTTTATC---TTATTGCTTACAGTACTACT--AATTCA------TAATTACTTGAAAATAAACAGAGCA-------ATACAACATCTTACAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AATGTTCAAATGAGAAACATTCTATTCTGTTTCCCTGTCTTGGTTCTGAACTCATTAATCACAGAAGTTAGGACACTGCCAATAAAAACCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21110147 373 -  24206276 TTATTCCGAAAAGCAAGAAAC-C-TATG-TCTCACCAATCCACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATGGAAAGGAATGCCAAACCAGATG-----TGTAGGGTAAAAAT----TTACACCCCATGTTATTTTCAAACATTCAACTAATATGC-TAAC----------------CACAAAGCAGTTTTATC---TTATTGCTTACAGTACTACT--AATTCA------TAATTACTTGAAAATAAACAGAGCA-------ATACAACATCTTACAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AATGTTCAAATGAGAAACATTCTATTCTGTTTCCCTGTCTTGGTTCTGAACTCATTAATCACAGAAGTTAGGACACTGCCAATAAAAACCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        25321 373 -   1397330 TTATTCCGAAAAGCAAGAAAC-C-TATG-TCTCACCAATCCACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATGGAAAGGAATGCCAAGCCAGATG-----TGTAGGGTAAAAAT----TTACACCCCATGTTATTTTCAAACATTCAACTAATATGC-TAAC----------------CACAAAGCAGTTTTATC---TTATTGCTTACAGTACTACT--AATTCA------AAATTACTTGAAAATAAACAGAGCA-------ATACAACATCTTACAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AATGTTCAAATGAGAAACATTCTATTCTGTTTCCCTGTCTTGGTTCTGAACTCATTAATCACAGAAGTTAGGACACTGCCAATAAAAACCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        48635 376 -   1784207 TTATTCTTAAAAGCAAGAAAC-C-TATG-TCTCACCAATCCACTCAGTCAAGTATGATAATCCTACTTTGCTAATTCTGTCCCCACTAAAATTGAAAGGAATGCCAAACCAGATG-----TGTAGGGTAAAAAT----TTACACCCCATGTTATTTTCAAACATTCAACTAATATGC-TAAC----------------CACAAAGCAGTTTTATCTTGTTATTGCTTACAGTACTACT--AATTCA------TAATTACTTGAAAATAAACAGAGCA-------ATACAACATCTTACAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AGTGTTCAAATGAGAAACATTCTATTCTGTTTCCCTGTCTTGGCTCTGAACTCATTAATCACAGAAGTTAGGACACTGCCAATAAAAACCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22245507 378 + 158406734 TTATTCTGAAAAGCAAGAAAC-C-TACA-TCTCACCAATCCACTCAATCAAGTATGATAATCCTATTTTGCCAATTCTGTCCTCACTAAAATTGAAAGGAATACCAAACCAGATGAGATATGTAGGGTAAAAAT----TCATACCCCATGTTATTTTTAAACATACAACTAATATGC-TAAC----------------CACAAAGCAGTTTTATCTTGTTATTGCTTACAG---TACT--AATTCA------TAATCACTTGAAAGTAAACAGAGCA-------ATACAACATCCTACAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AGTGTTCAAATGATAAACATTCTATTCTGTATTCCTGTCTTGGCTCCGAATTCATCAATCACATTAGTTAGGACACTGCCAATAAAAACCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50481226 370 +  54856640 TTATTCTGAAAAGCAAGAAAC-C-TATG-TCTCACCAATCCACTCAATCAAGTATGATAATCCTATTTTGCTAATTCTGTCCTCACTAAAATTGAAAGGAATACCAACCCAGATG-----TTTAGGGTAAAAAT----TCATACCCCATGTTATTTTTAAATATACAACTAATATGC-TAAC----------------CACAAAGCAGTTTTATCTTGTTATTGCTTACAG---TACT--AGTTCA------TAATCACTTGAAAGTAAACAGAGCA-------ATACAACATCCTACAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AGTGTTCAAATGATAAACATTCTATTCTGTTTTCTTGTCTTGGCTCTGAAT---TCAATTACAGAAGTTAGGACACTGCCAATAAAAACCA
i saiBol1.JH378108          I 276 C 0
s cebCap1.NW_016107610v1       624933 370 -   2910086 TTATTCTGAAAAGCAAGAAAC-C-TATG-TCTCACCAATCCACTCAATCAAGTATGATAATCCTATTTTGCTAATTCTGTCCTCACTAAAATTGAAAGGAATACCAAACCAGATG-----TTTAGGGTAAAAAT----TCATACCCCATGTTATTTTAAAACATACAACTAATATGC-TAAC----------------CACAAAGCAGTTTTATCTTGTTACTGCTTACAG---TACT--AATTCA------TAATCACTTGAAAGTAAACAGAGCA-------ATACAACATCCTACAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AGTGTTCAAATGATAAACATTCTATTCTGTTTTCCTGTCTTGGCTGTGAAT---TCAATTACAGAAGTTAGGACACTGCCAATAAAAACCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40653040 373 +  42888418 TTATTCTGAAAAGTAAGAAAC-C-TATG-TCTCACCAATCCACTCAATCAAGTATGATAATCCTATTTTGCTAATTCTGTCCTCACTAAAATTGAAAGGAATACCAAACCAGACG-----TGTAGGGTAAAAAT----TCATACCCCATGTTATTTTTAAACATACAACTAATATGC-TAAC----------------CACAAAGCAGTTTTATCTTGTTATTGCTTACAG---TACT--AATTCA------TAATCACTTGAAAGTAAACAGAGCA-------ATACAACATCCTACAGGCTTACTGGTACAAATGGGCCTTCTCCCC-AGTGTTCAAATGATAAACATTCTATTCTGTTTTCGTGTCTTGGCTCTGAATTCATCAATCACAGAGGTTAGGACACTGCCAATAAAAACCA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113276614 383 + 116334831 CTATTCTGAAAAGCAAGAAAC-C-TATG-TCTCACCAATTCACTCAGTCAAGTATGATAATCCTAATTGACTAATTCTGTTCCCACTAAAATTGAAAGGAATACCAAACCAGATG-----TAGAGAGTAAAAAT--TATCACACCCCAAGctattttcaaacatataactgatatgc-taac----------------tacaaagcacttttatctagttattGCTTATAGTATTAATTAAATTTA------TAATTACTTGAAAGTAAACAGAACAATTATGTATACAATGTCCTACAGGCATATTGGTACAAATGGGCCTTTT-CCC-AATGTTCAAATAAGGAATGTTCTATTCTGTTTTCTGGTCTTGGCTCTGAAC---TCAATTACAGAAGTTAGGACACTGCCAATAAAAACCA
i micMur3.chr9              C 0 I 362
s proCoq1.NW_012142813v1        21716 379 +     80520 CTATTCTGAAAAGCAAGAAAC-C-TATG-TCTCACCAATTCACTCAGCCAAGTATGGTAATCCTAATTGACTAATTCTGTTCCCGCTGAAATTGAAAGGAATACCAGACCAGATG-----TAGAAGGTAAATAT--TATCACACTCCAAGCTATTTTCAAACATATAACTGATACGA-TAAC----------------TACAAAGCAGTTTTATCTAGTTATTGCTTATAGT----ATTAAATTTA------TAATTATCTGAAAGTAAACAGAACAATTATGTATACAATGTCCTACAGGCTTATTGGTACAAATGGGCCTTCT-CCC-AATGTTCAAATAAGGAACATTCTATTCTGTTTCCTGGTCTTGGCTCTGAAC---TCAATTACAGAAGTTAGGACACTGCCAATAAAAACCA
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             639249 377 -  36342412 CTATGCTGAAAAGCAAGAAAC-C-TGTG-TCTCACCAACTTACTTAGCCAAGTATGATAATCCTAATTCACTAATTCTGTCCCCACTAAAATCGAAAGGAATGCCTAACCAGAT------------GTAAAAAT--GATCACACCCCAAGCTATTTTCGAACATACAACTGATAAGAGTAAC----------------TATATTGCAGTTGTATCTAGTTATTGCTTACAGTAGTAATTAAATTTA------CAATTACTAAAAAGCAAATAGAACAATTATGTATACAATATCCTACAGGCTTAGAGATACAAACAGACCTTCT-CCT-AATGTTCAAATAAGGAACATTCTATTCTTTTTCCTTGTCTTGGCTCTGAAC---TCAATCACAGAAGTTAGGACACTGCCAATAAAAACCA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81357547 375 + 145441459 TTATTCTGAAAGACAGAACACTT-TATG-TCTCCTCAA-----------ATATTTAATAACCCTACTTCATCAGCTTTGCCTCCAATAAAATCAAAAGGAAT-----ATCAGACG-----TATAGGGTAAAAAAAAAATCACAACTACAGCTATTTT-GACTAAATAACTTATTAGC-TATCAACAAAGCATTTTTTTAACAAAGCAGTTTTATCTTGCTAATGTTTATAG---TAGTTAGATTTA------TAAATATTTAGGAGTAGACGGAACAACTACATATGCAATGCCCTACAAGTTT-CTGACCCTCGTAGACTTCCTCCC-------TCAGCTAA-AGGGATGCTCCTCTGTTTCCTCATCTTGCCTCTGAAT-CGTCAACTGCAGAAGTCAAGATGCTGTCAGTAGACAC--
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54414759 371 +  91889043 GTATTCTGAAAGGCAAGAAAC-CTTATA-CTTTATCAAACCAGTCAGCCCAGTGTGACAACTCTAAATCACTAATTCTGTCTCCACTAAAACAGAGAGGAATAGCAAAGCAGATG-----TGA---------------TCACAGCC-AAGCTATTTTCAAACATGTTCTTGATAAGC-TAGC----------------CACAAAGCAGTTTTATCTAGTCATGGCTTACTA---TACT--AATTTAAATTTCCAATTACTTTAAAATCAACAGAGCGATTTTGTATACAATGTCCTACAAGTTTACTGGTCCAAACTGGCTTTGTCCCCAAATGTTCAAAGAAGGAACATTCTA--CTGTTTCCTGGTCTTCACTCTGAAC---TCAGTCACAGGAATCAGGACACTGCCAGTAAAAACCA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1804620 288 +   3943991 CTACTGTGAAAGGCAAGAAAC-CTTATGTTCTCATCAATCCAGTCAACCAGGTATGATAATCCTACTT-----------TTACTACTGAAATTGAATGGAATACCAAACCAGATG-----TTTAGGGGAAAAAG--CATCACACCTCAAGTGA-----AAG-----------------TAAC----------------CA-AAGGAAGTTGTAT----GTAACATCTACAA---GGCT--AGTCCT------TCACT---------------------------------------------------GTCCAAATGGGCCTTCTCCCT-GA---CTGAATGAAGAACAGTCCACTC--TTTCTCTGTCTTGGCTCTGAAA---TCAATCACTTAAGTTAGGACACTGACAATAAAAACCA
i dasNov3.JH570731          C 0 C 0

a score=496957.000000
s hg38.chr15_KI270850v1_alt    343605  40 +    430880 GCACTGGCAACCCAGTAAGACAA---------------GAATG-------------------------------------------------------------------------------TCAC-AACTGTTC
s panTro5.chr15              63496980  40 +  83230942 GCACTGGCAACCCAGTAAGACAA---------------GAATG-------------------------------------------------------------------------------TCAC-AACTGTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80454119  40 +  99763055 GCACTGGCAACCCAGTAAGACAA---------------GAATG-------------------------------------------------------------------------------TCAC-AACTGTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        54278  40 -   1709092 GCACTGGCAACCCAGTAAGACAA---------------GAATG-------------------------------------------------------------------------------TCAC-AACTGTTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17206087  40 - 121039945 GCACTGGCAACCCAGTAAGACAA---------------GAATG-------------------------------------------------------------------------------TCAC-AACTGTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60894620  40 + 169600520 GCACTAGCAACCCAGTAAGACAA---------------GAATG-------------------------------------------------------------------------------TCAC-AACTGTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108421369  40 - 171882078 GCACTAGCAACCCAGTAAGACAA---------------GAATG-------------------------------------------------------------------------------TCAC-AACTGTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        31817  40 -   2311642 GCACTAGCAACCCAGTAAGACAA---------------GAATG-------------------------------------------------------------------------------TCAC-AACTGTTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        29982  40 -   1987038 GCACTAGCAACCCAGTAAGACAA---------------GAATG-------------------------------------------------------------------------------TCAC-AACTGTTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21110520  40 -  24206276 GCACTAGCAACCCAGTAAGACAA---------------GAATG-------------------------------------------------------------------------------TCAC-AACTGTTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        25694  40 -   1397330 GCACTAGCAACCCAGTAAGACAA---------------GAATG-------------------------------------------------------------------------------TCAC-AACTGTTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        49011  40 -   1784207 GCACTAGCAACCCAGTAAGACAA---------------GAATG-------------------------------------------------------------------------------TCAC-AGCTGTTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22245885  40 + 158406734 GCACTAGCAACCCAATAAGACAA---------------GAGTA-------------------------------------------------------------------------------TCAC-AACTGTTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50481596  40 +  54856640 GCATTAGCAACCCAATAAGACAA---------------GAGTA-------------------------------------------------------------------------------TCAC-AACTGTTC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       625303  40 -   2910086 GCATTAGCAACCCAGTAAGACAA---------------GAGTA-------------------------------------------------------------------------------TCAC-AACTGTTC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40653413  40 +  42888418 GCACTAGCAACCCAATAAGACAA---------------GAGTA-------------------------------------------------------------------------------TCAC-AACTGTTC
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        22095  39 +     80520 CCACTAGCACCCCAAAAAGACA----------------GAATA-------------------------------------------------------------------------------TCAC-GACTGTTC
i proCoq1.NW_012142813v1    C 0 I 321
s otoGar3.GL873530             639626 133 -  36342412 CCACTAGCA-CCCAACAAGACAAATGCTTTCAGCATATGAATAGACTAGGCTCTCCTTGACATCAATACTATGAGATTAATGGATCTGCCCTCAACCCTTCAGCTTTCTATGTATGTTAAACTCAA-AATTGTCC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81357922  22 + 145441459 --------AACTCAATA--GTAA---------------GCACA-------------------------------------------------------------------------------GCCC---------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54415130  40 +  91889043 CCCATAGCAATCTGACAAGACAA---------------GAATG-------------------------------------------------------------------------------TCTC-CACTGTTC
i canFam3.chr3              C 0 I 3
s dasNov3.JH570731            1804908  41 +   3943991 CCACTAGCAACCCAATAATACAA---------------GAATG-------------------------------------------------------------------------------TCACTAACTGTTC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113276997 362 + 116334831 I

a score=378251.000000
s hg38.chr15_KI270850v1_alt    343645 36 +    430880 -------CAA-----------------GCC---AGACTCATCT------------------TTATAGCACCCAAATAGACA
s panTro5.chr15              63497020 36 +  83230942 -------CAA-----------------GCC---AGACTCATCT------------------TTATAGCACCCAAATAGACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80454159 36 +  99763055 -------CAA-----------------GCC---AGACTCATCT------------------TTATAGCACCCAAATAGACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        54318 36 -   1709092 -------CAA-----------------GCC---AGACTCATCT------------------TTATAGCACCCAAATAGACA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17206127 36 - 121039945 -------CAA-----------------GCC---AGACTCATCT------------------TTATAGCACCCAAATAGACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60894660 36 + 169600520 -------CAA-----------------GCC---AGACTCATCT------------------TTATAGCACCCAAATGGACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108421409 36 - 171882078 -------CAA-----------------GCC---AGACTCATCT------------------TTATAGCACCCAAATGGACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        31857 36 -   2311642 -------CAA-----------------GCC---AGACTCATCT------------------TTATAGCACCCAAATGGACA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        30022 36 -   1987038 -------CAA-----------------GCC---AGACTCATCT------------------TTATAGCACCCAAATGGACA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21110560 36 -  24206276 -------CAA-----------------GTC---AGACTCATCT------------------TTATAGCACCCAAATGGACA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        25734 36 -   1397330 -------CAA-----------------GCC---AGACTCATCT------------------TTATAGCACCCAAATGGACA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        49051 36 -   1784207 -------CAG-----------------GTC---AGACCCATCT------------------TTATAGCACCCAAATAGACA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22245925 36 + 158406734 -------CAA-----------------GCC---AGACTCATCT------------------TTATAGCACCCAAACAGACA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50481636 32 +  54856640 -------CAA-----------------GCC---AGACTCATCT------------------TTAGAGCACCCAA----ACA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       625343 36 -   2910086 -------CAA-----------------GCC---AGACTCATCT------------------TTATAGCACCCAAACAGACA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40653453 32 +  42888418 -------CAA-----------------GCC---AGACTCATCT------------------TTATAGCACCCAA----ACA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             639759 36 -  36342412 -------AAA-----------------CCC---ACTGTGAAGT------------------TTCTCTGACTCAAATCCACA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81357944 39 + 145441459 -------CAT-----------------GCCCCACAACCCAACT------------------CACAAGCTCGTGAGGAGGCA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54415173 54 +  91889043 -------CTA-----------------CTC---AGAGCCATGTCCCATCACTGCCGGTGTCTCACAGCACCTGAACGGACA
i canFam3.chr3              I 3 C 0
s dasNov3.JH570731            1804949 60 +   3943991 CCCAGATCAGAACCATGGTCCATCATTGCC---AGAGTTGTCC------------------TTAAAGAACCTGAACAGACA
i dasNov3.JH570731          C 0 I 229
e micMur3.chr9              113276997 362 + 116334831 I
e proCoq1.NW_012142813v1        22134 321 +     80520 I

a score=287471.000000
s hg38.chr15_KI270850v1_alt    343681 24 +    430880 ATGGG---CCTTCCTTGATGC------------------CAGCAT
s panTro5.chr15              63497056 24 +  83230942 ATGGG---CCTTCCTTGATGC------------------CAGCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80454195 24 +  99763055 ATGGG---CCTTCCTTGATGC------------------CAGCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        54354 24 -   1709092 ATGGG---CCTTCCTTGATGC------------------CAACAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17206163 24 - 121039945 ATGGG---CCTTCCTTGATGC------------------CAACAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60894696 24 + 169600520 ATGGG---CCTTCCTTGATGT------------------CAACAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108421445 24 - 171882078 ATGGG---CCTTCCTTGATGT------------------CAACAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        31893 24 -   2311642 ATGGG---CCTTCCTTGATGT------------------CAACAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        30058 24 -   1987038 ATGGG---CCTTCCTTGATGT------------------CAACAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21110596 24 -  24206276 ATGGG---CCTTCCTTGATGT------------------CAACAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        25770 24 -   1397330 ATGGG---CCTTCCTTGATGT------------------CAACAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        49087 24 -   1784207 ATGGG---CCTTCCTTGATGC------------------CAACAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22245961 24 + 158406734 ATGGg---ccttccttgatgc------------------caacat
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50481668 24 +  54856640 ATGGg---ccttccttgatgc------------------caacat
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       625379 24 -   2910086 ATGCg---ccttccttgatgc------------------caacat
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40653485 24 +  42888418 ATGGg---cctttcttgatgc------------------caacat
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             639795 45 -  36342412 TTAAGAAACCTTTATTGCTATTGCTTTGTAGCTTTATTGCTACAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81357983 22 + 145441459 CTGGA-----TTCCTTGCTGC------------------CCACAC
i mm10.chr7                 C 0 I 124
s canFam3.chr3               54415227 24 +  91889043 CTGGG---CCTTCCTTGATGC------------------CAACAC
i canFam3.chr3              C 0 C 0
e micMur3.chr9              113276997 362 + 116334831 I
e proCoq1.NW_012142813v1        22134 321 +     80520 I
e dasNov3.JH570731            1805009 229 +   3943991 I

a score=41130.000000
s hg38.chr15_KI270850v1_alt    343705 13 +    430880 GGTAACG----------------------------------------TAATGA
s panTro5.chr15              63497080 13 +  83230942 GGTAACG----------------------------------------TAATGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80454219 13 +  99763055 GGTAACG----------------------------------------TAATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        54378 13 -   1709092 GGTAACG----------------------------------------TAATGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17206187 13 - 121039945 GGTAACG----------------------------------------TAATGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60894720  9 + 169600520 GGTAAGA----------------------------------------T----A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108421469  9 - 171882078 GGTAAGA----------------------------------------T----A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        31917  9 -   2311642 GGTAAGA----------------------------------------T----A
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        30082  9 -   1987038 GGTAAGA----------------------------------------T----A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21110620  9 -  24206276 GGTAAGA----------------------------------------T----A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        25794  9 -   1397330 GGTAAGA----------------------------------------T----A
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        49111  9 -   1784207 GGTAAGA----------------------------------------T----A
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22245985 13 + 158406734 gataagg----------------------------------------taatga
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50481692 13 +  54856640 ggtaagg----------------------------------------taatga
i saiBol1.JH378108          C 0 I 905
s cebCap1.NW_016107610v1       625403 13 -   2910086 ggtaagg----------------------------------------taatga
i cebCap1.NW_016107610v1    C 0 I 631
s aotNan1.NW_018505940v1     40653509 13 +  42888418 ggtaagg----------------------------------------taatga
i aotNan1.NW_018505940v1    C 0 I 473
s otoGar3.GL873530             639840 53 -  36342412 GTTAGGAGCTATCTTCTGTTTAGCCTACCCCTCTTCTGCAGGCCTATTACTGG
i otoGar3.GL873530          C 0 I 2
s canFam3.chr3               54415251 13 +  91889043 TGTAAGA----------------------------------------TAATGG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              113276997 362 + 116334831 I
e proCoq1.NW_012142813v1        22134 321 +     80520 I
e mm10.chr7                  81358005 124 + 145441459 I
e dasNov3.JH570731            1805009 229 +   3943991 I

a score=31122.000000
s hg38.chr15_KI270850v1_alt    343718 2 +    430880 AT
s panTro5.chr15              63497093 2 +  83230942 AT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80454232 2 +  99763055 AT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        54391 2 -   1709092 AT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17206200 2 - 121039945 AT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60894729 2 + 169600520 AT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108421478 2 - 171882078 AT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        31926 2 -   2311642 AT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        30091 2 -   1987038 AT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21110629 2 -  24206276 AT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        25803 2 -   1397330 AT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        49120 2 -   1784207 AT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22245998 2 + 158406734 at
i calJac3.chr6              C 0 I 973
s saiBol1.JH378108           50482610 2 +  54856640 AT
i saiBol1.JH378108          I 905 C 0
s cebCap1.NW_016107610v1       626047 2 -   2910086 AT
i cebCap1.NW_016107610v1    I 631 C 0
s aotNan1.NW_018505940v1     40653995 2 +  42888418 AT
i aotNan1.NW_018505940v1    I 473 C 0
s otoGar3.GL873530             639895 2 -  36342412 AT
i otoGar3.GL873530          I 2 I 16
s canFam3.chr3               54415264 2 +  91889043 AT
i canFam3.chr3              C 0 I 119
s dasNov3.JH570731            1805238 2 +   3943991 AT
i dasNov3.JH570731          I 229 C 0
e micMur3.chr9              113276997 362 + 116334831 I
e proCoq1.NW_012142813v1        22134 321 +     80520 I
e mm10.chr7                  81358005 124 + 145441459 I

a score=198298.000000
s hg38.chr15_KI270850v1_alt    343720 26 +    430880 CAGTCTTCAAT----------------------------------------------------------CCTGTCCCCACT---GTT
s panTro5.chr15              63497095 26 +  83230942 CAGTCTTCAAT----------------------------------------------------------CCTGTCCCCACT---GTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80454234 26 +  99763055 CAGTCTTCAAT----------------------------------------------------------CCTGTCCCCACT---GTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        54393 25 -   1709092 CAGTCTTCAAT----------------------------------------------------------CCTGT-CCCACT---GTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17206202 26 - 121039945 CAGTCTTCAAT----------------------------------------------------------CCTGTCCCCACT---GTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60894731 26 + 169600520 CAGTCTTCAAT----------------------------------------------------------CCTGTCCCCACT---GTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108421480 26 - 171882078 CAGTCTTCAAT----------------------------------------------------------CCTGTCCCCACT---GTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        31928 26 -   2311642 CAGTCTTCAAT----------------------------------------------------------CCTGTCCCCACT---GTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        30093 26 -   1987038 CAGTCTTCAAT----------------------------------------------------------CCTGTCCCCACT---GTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21110631 26 -  24206276 CAGTCTTCAAT----------------------------------------------------------CCTGTCCCCATT---GTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        25805 26 -   1397330 CAGTCTTCAAT----------------------------------------------------------CCTGTCCCCACT---GTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        49122 26 -   1784207 CAGTCTTCAAC----------------------------------------------------------CCTGTCTTCACT---GTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22246973 22 + 158406734 CAGTTTTAAAT----------------------------------------------------------CCTTTCCCCAC-------
i calJac3.chr6              I 973 C 0
s saiBol1.JH378108           50482612 22 +  54856640 CAGTTTTCAAT----------------------------------------------------------CCTGTCCCCAC-------
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       626049 22 -   2910086 CAGTTTTCAAT----------------------------------------------------------CCTGTCCCCAC-------
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40653997 22 +  42888418 CAGTTTTCAAT----------------------------------------------------------CCTGTCCCCAC-------
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             639913 29 -  36342412 CAGGCTTTAGT----------------------------------------------------------CTTGTCCCTGCTCAGGTC
i otoGar3.GL873530          I 16 I 8
s canFam3.chr3               54415385 81 +  91889043 CTATCTTCTGTTTGGTCTATTATAAAACCTAGAGGCCTCTCCGTTCTTGGCAACCAGTTTGGCCTTTGACCTGTCTCAATT------
i canFam3.chr3              I 119 C 0
s dasNov3.JH570731            1805240 28 +   3943991 CAGTCCTTAAT----------------------------------------------------------CTGGTCCTCCCT-CAGTC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113276997 362 + 116334831 I
e proCoq1.NW_012142813v1        22134 321 +     80520 I
e mm10.chr7                  81358005 124 + 145441459 I

a score=82540.000000
s hg38.chr15_KI270850v1_alt    343746 5 +    430880 TGTAC
s panTro5.chr15              63497121 5 +  83230942 TGTAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80454260 5 +  99763055 TGTAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        54418 5 -   1709092 TGTAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17206228 5 - 121039945 TGTAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60894757 5 + 169600520 TGTAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108421506 5 - 171882078 TGTAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        31954 5 -   2311642 TGTAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        30119 5 -   1987038 TGTAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21110657 5 -  24206276 TGTAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        25831 5 -   1397330 TGTAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        49148 5 -   1784207 TGTAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22246995 5 + 158406734 TGTAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50482634 5 +  54856640 TGTAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       626071 5 -   2910086 TGTAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40654019 5 +  42888418 TGTAC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113277359 5 + 116334831 TGTGC
i micMur3.chr9              I 362 C 0
s proCoq1.NW_012142813v1        22455 5 +     80520 TGTGC
i proCoq1.NW_012142813v1    I 321 C 0
s otoGar3.GL873530             639950 5 -  36342412 TGTGG
i otoGar3.GL873530          I 8 C 0
s canFam3.chr3               54415466 5 +  91889043 TATGC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1805268 5 +   3943991 TGTGC
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81358005 124 + 145441459 I

a score=6046267.000000
s hg38.chr15_KI270850v1_alt    343751 414 +    430880 CTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGCTAGTTCTTGCCCATTTATTTCACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAGATGTGGAAGGATATTTCCTAAAAGGAATAGG-CCCAACGTGTTGCTACA--GCAAGAAACTGGGCAATGTCAGCAATCTTTTAC-GACAAAAACAGA------A---TATAAT--GGTCTCATCCAAAAG-CATGGTAATGTCATTTCACAGGAAAACAATGGCACCAGAGAAAGTACAAAGATGGGTTGCCAAAATCATTAGGTGAACAGGGCA-CAGCACTATCAGAGGAGAATGAGATCCAGCCCAACTCTGTGAGCAAAC-----AGACACACTGAAGCCTAT-GGAAACAAATGGAATGCAGAAACT
s panTro5.chr15              63497126 414 +  83230942 CTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGCTAGTTCTTGCCCATTTATTTCACCCTCCTCTTTCAGCAGAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAGATGTGGAAGGATATTTCCTAAAAGGAATAGG-CCCAACGTGTTGCTACA--GCAAGAAACTGGGCAATGTCAGCAATCTTTTAC-GACAAAAACAGA------A---TATAAT--GGTCTCATCCAAAAG-CATGGTAATGTCATTTCACAGGAAAACAATGGCACCAGAGAAAGTACAAAGATGGGTTGCCAAAATCATTAGGTGAACAGGGCA-CAGCACTATCAGAGGAGAATGAGATCCAGCCCAACTCTGTGAGCAAAC-----AGACACACTGAAGCCTAT-GGAAACAAATGGAATGCAGAAACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80454265 414 +  99763055 CTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGCTAGTTCTTGCCCATTTATTTCACCCTCCTCTTTCAGCAGAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAGATGTGGAAGGATATTTCCTAAAAGGAATAGG-CCCAACGTGTTGCTACA--GCAAGAAACTGGGCAATGTCAGCAATCTTTTAC-GACAAAAACAGA------A---TATAAT--GGTCTCATCCAAAAG-CATGGTAATGTCATTTCACAGGAAAACAATGGCACCAGAGAAAGTACAAAGATGGGTTGCCAAAATCATTAGGTGAACAGGGCA-CAGCACTATCAGAGGAGAATGAGATCCAGCCCAACTCTGTGAGCAAAC-----AGACACACTGAAGCCTAT-GGAAACAAATGGAATGCAGAAACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        54423 414 -   1709092 CTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGCTAGTTCTTGCCCATTTATTTTACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAGATGTGGAAGGATATTTCCTAAAAGGAATAGG-CCCAACGTGTTGCTACA--GCAAGAAACTGGGCAATGTCAGCAATCTTTTAC-GACAAAAACAGA------A---TATAAT--GGTCTCATCCAAAAG-CATGGTAATGTCATTTCACAGGAAAACAATGGCACCAGAAAAAGTACAAAGATGGGTTGCCAAAATCATTAGGTGAACAGGGCA-CAGCACTATCAGAGGAGAATGAGATCCAGCCCAACTCTGTGAGCAAAC-----GGACACACTGAAGCCTAT-GGAAACAAATGGAATGCAGAAACT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17206233 412 - 121039945 CTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGCTAGTTCTTGCCCATTTATTTCACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAAGACAAAGATGTGGAAGGACATTTCCTAAAAGGAATAGG-CCCAACGTGTGGCTACA--GCAAGAAACTGGGCAATGTCAGCAATCTTTTAC-GACAAAAACAGA------A---TATAAT--GGTCTCATCCAAAAG-CATGGTA--GTCATTTCACAGGAAAACAATGGCACCAGAGAAAGTACAAAGATGGGCTGCCAAAATCATTAGGTGAACAGGGCA-CAGCACTATCAGAGGAGAATGAGATCCAGCCCAACTCTGTGAGCAAAC-----AGACACACTGAAGCCTAT-GGAAACAAACGGAATGGAGAAACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60894762 404 + 169600520 CTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGTTAGTTCTTGCCCATTTATTTCACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAGATGTGGAAGGACACTTCCTAAAAGGAATAGG-CCCAAGGTGTTGCTACA--GCAAGAAACTGGGCAATATCAGCAATCTTTTAC-GACAAAAACAGA------A---TATAAT--GGTCTCATTCAAAAG-CATGGTAATGTCATTTCATATGAAAACAATGGCACCAGAAAAAGTACTAAGATGGGCTGCCAAAATCATTAGGTGAACAGGGCA-CAGCACTATCAGAGAAGAATGAGATCCAGCCCAACTCTGTGAGCAAAC-----AGATACAC-----------GGAAATAAATGGAATGGAGAAACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108421511 404 - 171882078 CTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGTTAGTTCTTGCCCATTTATTTCACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAGATGTGGAAGGACACTTCCTAAAAGGAATAGG-CCCAAGGTGTTGCTACA--GCAAGAAACTGGGCAATGTCAGCAATCTTTTAC-GACAAAAACAGA------A---TATAAT--GGTCTCATTCAAAAG-CATGGTAATGTCATTTCATATGAAAACAATGGCACCAGAAAAAGTACTAAGATGGGCTGCCAAAATCATTAGGTGAACAGGGCA-CAGCACTATCAGAGAAGAATGAGATCCAGCCCAACTCTGTGAGCAAAC-----AGATACAC-----------GGAAATAAATGGAATGGAGAAACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        31959 404 -   2311642 CTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGTTAGTTCTTGCCCATTTATTTCACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAGATGTGGAAGGACACTTCCTAAAAGGAATAGG-CCCAAGGTGTTGCTACA--GCAAGAAACTGGGCAATGTCAGCAATCTTTTAC-GACAAAAACAGA------A---TATAAT--GGTCTCGTTCAAAAG-CATGGTAATGTCATTTCATATGAAAACAATGGCACCAGAAAAAGTACTAAGATGGGCTGCCAAAATCATTAGGTGAACAGGGCA-CAGCACTATCAGAGAAGAATGAGATCCAGCCCAACTCTGTGAGCAAAC-----AGATACAC-----------GGAAATAAATGGAATGGAGAAACT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        30124 404 -   1987038 CTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGTTAGTTCTTGCCCATTTATTTCACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAGATGTGGAAGGACACTTCCTAAAAGGAATAGG-CCCAAGGTGTTGCTACA--GCAAGAAACTGGGCAATGTCAGCAATCTTTTAC-GACAAAAACAGA------A---TATAAT--GGTCTCACTCAAAAG-CATGGTAATGTCATTTCATATGAAAACAATGGCACCAGAAAAAGTACTAAGATGGGCTGCCAAAATCATTAGGTGAACAGGGCA-AAGCACTATCAGAGAAGAATGAGATCCAGCCCAACTCTGTGAGCAAAC-----AGATACAC-----------GGAAACAAATGGAATGGAGAAACT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21110662 404 -  24206276 TTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGCTAGTTCTTGCCCATTTATTTCACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAGATGTGGAAGGACACTTCCTAAAAGGAATAGG-CCCAAGGTGTTGCTACA--GCAAGAAACTGGGCAATGTCAGCAATCTTTTAC-GACAAAAACAGA------A---TATAAT--GGTCTCATCCAAAAG-CATGGTAATGTCATTTCATATGAAAACAACGGCACCAGAAAAACTACTAAGATGGGCTGCCAAAATCATTAGGTGAACAAGGCA-CAGCACTATCAGAGAAGAATGAGATCCAGCCCAACTCTGTGAGCAAAC-----AGATACAC-----------AGAAACAAATGGAATGGAGAAACT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        25836 404 -   1397330 CTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGTTAGTTCTTGCCCATTTATTTCACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAGATGTGGAAGGACACTTCCTAAAAGGAATAGG-CCCAAGGTGTTGCTACA--GCAAGAAACTGGGCAATGTCAGCAATCTTTTAC-GACAAAAACAGA------A---TATAAT--GGTCTCACTCAAAAG-CATGGTAATGTCATTTCATATGAAAATAATGGCACCAGAAAAAGTACTAAGATGGGCTGCCAAAATCATTAGGTGAACAGGGCA-AAGCACTATCAGAGAAGAATGAGATCCAGCCCAACTCTGTGAGCAAAC-----AGATACAC-----------GGAAACAAATGGAATGGAGAAACT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        49153 399 -   1784207 CTTTCCAAATCAGAGACTGACCTTAGTGAGGACTAGCTAGTTCTTGCCCATTTATTTCACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAGATGTGGAAGGACATTTCCTAAAAGGAATAGG-CCCAAGGTGTTGCTACA--GCAAGAAACTGGGCAATGTCAGCAATCTTTTAC-GACAAAAACAG--------------AAT--GGTCTCATCCAAAAG-CATGGTAATGTCATTTCATACGAAAACAATGGCACCAGAAAAAGTACTAAGATGGGCTGCCAAAATCATTAGGTGAACAGGGCA-CAGCACTATCAGAGAAGAATGAGATCCAGCCCAACTCTGTGAGCAAAC-----AGATACAC-----------AGAAACAAATGGAATGGAGAAACT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22247000 418 + 158406734 CTTTCCAAATCAGAGACTGACCTCAGTGGGGACTGGCTAGTTCTTGCCAATTTATTTCACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAAATATGGAAGGATATTTCCTAAAAGAAATGGGCCCCAATGTGTTACTACACAGCAAGAAATTGGGCAATGTCACCAATCTTTTAT-GACAAAAACAAA------A---TATAATGGGGTCTCCTCCAAAAG-CATGGTAATGTCATTTCATAGAAAAACAATGGTCCCAGAGAAAGTACAAAGATGGGCTGCCAAAATCATTAGGTGAACAGGGCAGCAGCACTATCAGAGGAGAATGAGATCCAGCCCAACGCTGTGAGCAGAC-------AGACACTGAAGCCTAT-GGAAACAAATGGAATGGAGAAACT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50482639 417 +  54856640 CTTTCCAAATCAGAAACTGACCTTAGTGGGGACTGGCTAGTTCTTGCC-----ATTTCACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTTAGGACAAAGATATGGAAGGATATTTCCTAAAAGAAACAGGCCCCAACGTGTTGCTACATAGCAAGAAATTGGGGAATGTCACCAATCTTTTAT-GACAAAAACAAA------A---TATAAT--GGTCTCCTCCAAAAG-CGTGGTAACATCATTTCATAGGAAACCAATGGTACCAGAGAAAGTACAAAGAGGGGCTGCCAGAATCATTAGGTGAACAGGGCAGTAGCACTATCAGAGGAGAATGAGACCCAGCCCAACTCTGTGAGCAGACAGAC-AGAGACACTGAAGCCTAT-GGAAACAAATGGAATGGAAAAACT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       626076 420 -   2910086 CTTTCCAAATCAGAAACTGACCTTAGTGGGGACTGGCTAGTTCTTGTCCATTTATTTTACCCTCCTCTTTCAGCAAAGAGGCAGACAACCAATGGAAGGAACTATCATTTTCATTCAGGACAAAGATATGGAAGGATATTTCCTAAAAGAAACAGGCCCCAGTGTGTTGCTACACAGCAAGAAATTGGGCAATGTCACTAATCTTTCAT-GACAAAAACAAA------A---TATAAT--GGTCTCCTCCAAAAG-CATGGTAATGTGATTTCATAAGAAAACAATGGTACCAGAGAAAGCACAAAGATCAGCTGCCAAAATCATTAGGTGAACAGGGCAGTAGCACTATCAGAGGAGAATGAGATCCAGCCCAACTC--TGAACAGACAGAC-AGAGACACTGAAGCCTAT-GGAAACAAATGGAATGGAGAAACT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40654024 419 +  42888418 CTTTCCAAATCAGAGACTTACCTTAGTGGGGACTGGCTAGTTCTTGCCCATTTATTTCACCCTCCTCTTTCAGCAAAGAGGCAGACAGCCAATGAAAGGAACTATCATTTTCATTCAGGACAAAGATATGGAAGGATATTTCCTAAAAAAAATAGGCCCCAACATGTTGCTACA---CAAGAAATTGGGCAATGTCACCAATCTTTTAT-GACAAAAACAAA------A---TATAAT--GGTCTCCTCCAAAAG-CAtggtaatgtcatttcatagaaaaacaatggtaccagagaaagtacaaagatgggctgccaaaatcattaggtgaacagggCAGCAGCACTATCAGAGGAGAATGAGATCCAGCCCAACTCTGTGAGCAGACAGAC-AGAGACACTGAAGCCTAT-GGAAACAAATGGAATGGAGAAACT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113277364 417 + 116334831 CTTTCCAGATCAGAGACTGGCCTTAGTGGGGACTGGCTAGTCCTTGCCC----ATTTTATCCG---CCTTCAGCACTGAGGCAGACAGCCACT-GACAGAACCATTGTTTTCATTGAGGATAAGGATATGGAAAGCCATTCCCTAAAAGGCACAGG-CCCAATGTATTTCCACA--GCAAGAAATTGGGTGCTGTCAACAGTATTTCAT-GACAAAAACAAAAGTCA-A---TATAAT--GGCTTCATCCAAAAG-CATGATAATGTCATTTCATAGGAAAACAATGGCACCAGAGAAAGTACAAATAGGGGCTGCTAAAACCAATAGGTGAGTAGGGCAGCAGCAATGTTAAGGGAGAATGAGGTCTGGCCCAGCTCTGTGAATACAAAGACAAGACCTACTGAAGCCTAC-GGAAACAAATGGAATGGAGAAACT
i micMur3.chr9              C 0 I 146
s proCoq1.NW_012142813v1        22460 417 +     80520 CTTTCCAGATCACAGACTGACCTTAGTGGGGACTGGCTAGTCCTTGCCC----ATTTTACCCT---CCTTCAGCACTGAGGCAAACAGCCAAT-TACAGAACCATCATTTTCATTCAGGACACGGATATGGAAGGCCATTCCCTAAAAGGCACAGG-CCCAATGTATTGCCACA--GCAAGAAACTGGGCACCGTCAATAATATTTCAT-GACAAAAACAGAAGTCG-A---TATTAT--GGCCTCATCCAAAAG-CATGGTAATGTCATTTCATAGGAAAACAATGGCACCAGAGAAAGTACAAAGATGGGCTGCTAAAACCATTAGGTGAACAGGGCAGCAGCAGTGGTAAGGAAGAATGAGGTCTGGCCCAGCTCTGTGAGTACAAAGATAAGATCTACTGAAGCCTAC-GGAAACAAATGGAACGGAGAAACT
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             639955 414 -  36342412 TTTTCCAGATAAGAGACTAACCTTAGTGGGAACTGACTAGGTCTTGCAC----ATCTTACCCTC--CCTTCAGCACTGAGAAAGATAGTCTTTAAAAAGAAACACCATTTTTATTCAGGACAAGTATATAGAAAGCCATTCCCTAAAAGGCATAGG-CCCAAAGTGTTGCTATG--ACAAGAAATTGGGCATTGTCAATAATATCTTAT-GACAAAAACATAAGTTATT---TATAAT--AGCCTCATCCAAGAGACATGGTAATGTCATTTCACAGAAAAACAATAGCAGCAGA-AAAACACAAAGATGGGGTGATGAAACCATCAGCTGAGCGAGGCAGCAGCACC-CTAAGGGAGACTGAAGCTC--CCCAGCTC--TGAGTAGAAAGACAAGACCTACTAAAGCCT-C-TGAAGCAAATGAGATGGAGACATG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81358129 316 + 145441459 CCTTTCACATTGCAAGGTGACCTGGGTGAGGACT-------TCTCGAC-----ACATTACCCT--TCCTTCAGCACTGAGGAAGACATTCAAGGAGATGAAACAT-------------------------------TATTCCCTAACATGCATAGG-GCTAATGTGTTGCTGTG--ACAAGAAACTGGGCATTGCTAGCAATATCTCAC--------ATAAA------A---CA-AGT--AGCCTC--CAGAAAG------------CATTCCATA------CAGTGACCACACAATAAACACAAACGTGGGCTGTCAGAATCACTAGGTGAACAGGGTATTCACACTATTAGGGGAGACTGGGATAGGGATGAGTTCTAT------AC--------------------------AAACACATGCAACAGAGAAAT-
i mm10.chr7                 I 124 C 0
s canFam3.chr3               54415471 401 +  91889043 CTTTCCAGACCAGAGACTAAGCTCAGTGGGGACTGGCTCGTTCTTGCCC----ATTTTAG-----TACTTCAGCACTGGGGCAGGGCGCC-----AAAAAACCATCACTTCCATCCAGGACAATGACATGGAAGCTCATTCCTTAAAAGGCACAGA-TCCAGGGTGCTGCTACG--CCAAGAACTTGGGTACCATCAGCAATATTTTGCAAACAAAAACATAAATCA-A---TATAAC--GGCCCCATCCAAAAG-CAAGGTAATGTCATTTCACAGGCAAACAGTGGCACT------AATACAATCATGGGCTGCCAAAACCTTTAAGTGAACAGGGCAGCAGAACTATCAGGGGAGAATGAGATCAGGTCCAGTTTTGTGATGGGAC-----AAATGTACTGAAGCCTACAAAAAACAAATGG-ATAGAGAAACT
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1805273 393 +   3943991 CTTTCCAGATCAGAAAATGCCCTTAGTGGGGCCTGGCTGGTTCCTGCCCTTTTAT--------CCTCCTTCAGCACTGAGGCAG-CAGCCAGTGAAATGAGCCATCATTTTCTTTCAGGA---GGATCTGGAAAGCCAGTCCCTCAAAGTGATAGG-CCCACTGTGTTGCTACA--GCAAGAAGCTGGACACTGTCAGCAGTAATTTGGAAACAAAAACAGA------AATCAATAAA--AGTCTCATCCAAGTG-CATGGAAATGTCATTTCTTAGGAAAACAATGGCTCTAGAGCAAGTACAAAGATGGGCTGCCAGAGCCATTAGGTAAACAAGGGA-----------------GACTAAGATCAGGTCCAGCTCTGCCAGTAGAA-GAC-AGACATACTGAAACTTAT-GGAAACAAATGGAGTGGAGAAATT
i dasNov3.JH570731          C 0 I 1

a score=404725.000000
s hg38.chr15_KI270850v1_alt    344165 32 +    430880 AACACTAACTTAGTCAT-----------CAAATTCAGGACCTC
s panTro5.chr15              63497540 32 +  83230942 AACACTAACTTAGTCAT-----------CAAATTCAGGACCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80454679 32 +  99763055 AACACTAACTTAGTCAT-----------CAAATTCAGGACCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        54837 32 -   1709092 AACACTAACTTAGTCAT-----------CAAATTCAGGACCTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17206645 32 - 121039945 AACACTAACTTAGTCAT-----------CAAATTCAGGACCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60895166 32 + 169600520 AACACTAATTTAGTCAT-----------CAAATTCAGGACCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108421915 32 - 171882078 AACACTAACTTAGTCAT-----------CAAATTCAGGACCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        32363 28 -   2311642 AAC----ACTTAGTCAT-----------CAAATTCAGGACCTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        30528 32 -   1987038 AACACTAACTTAGTCAT-----------CAAATTCAGGACCTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21111066 32 -  24206276 AACACTAACTTAGTCAT-----------CAAATTCAGGACCTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        26240 32 -   1397330 AACACTAACTTAGTCAT-----------CAAATTCAGGACCTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        49552 19 -   1784207 AACACTAAC------------------------TCAAGACCTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22247418 32 + 158406734 AACATTAACTTAGTCAT-----------CAAATTCAGGACCTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50483056 32 +  54856640 AACATTAACTTAGTCAT-----------CAAATTCAGGAACTC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       626496 32 -   2910086 AACATTAACTTAGTCAT-----------CAAATTCAGGACCTC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40654443 32 +  42888418 AACATTAACTTAGTCAT-----------CAAATTCAGGACCTC
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        22877 32 +     80520 AACATTCACTTAGTCAT-----------CAATTCCAGGGCCTC
i proCoq1.NW_012142813v1    C 0 I 113
s otoGar3.GL873530             640369 31 -  36342412 ATCATTCACTCCATTAC-----------CAGTTCCA-GGCCTC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81358445 43 + 145441459 AATATTCACTCAGTCAGGTACTAGGCCACAGAACAGTGACTTG
i mm10.chr7                 C 0 I 2
s canFam3.chr3               54415873 32 +  91889043 AACATTCACTTAGTTAT-----------CAACTCCAGAACCTC
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1805667 32 +   3943991 AACATTCACTTGGTCAT-----------CAAAGTCATCAACTT
i dasNov3.JH570731          I 1 C 0
e micMur3.chr9              113277781 146 + 116334831 I

a score=374137.000000
s hg38.chr15_KI270850v1_alt    344197 36 +    430880 TGAAGAGC-----------CAGTGGTTAATGAATATCTCCCT--------------GAAGC
s panTro5.chr15              63497572 36 +  83230942 TGAAGAGC-----------CAGTGGTTAATGAATATCTCCCT--------------GAAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80454711 36 +  99763055 TGAAGAGC-----------CAGTGGTTAATGAATATCTCCCT--------------GAAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        54869 36 -   1709092 TGAAGAGC-----------CAGTGGTTAATGAATATCTCCCT--------------GAAGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17206677 36 - 121039945 CGAAGAGC-----------CAGTGGTTAATGAACATCTCTCT--------------GAAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60895198 36 + 169600520 AGAAGAGC-----------CAGTGGTTAATGAACTTCTCCCT--------------GGAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108421947 36 - 171882078 AGAAGAGC-----------CAGTGGTTAATGAACTTCTCCCT--------------GGAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        32391 36 -   2311642 AGAAGAGC-----------CAGTGGTTAATGAACTTCTCCCT--------------GGAGC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        30560 36 -   1987038 AGAAGAGC-----------CAGTGGTTAATGAACTTCTCGCT--------------GGAGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21111098 36 -  24206276 AGAAGAGC-----------CAGTGGTTAATGAACTTCTCCCT--------------GGAGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        26272 36 -   1397330 AGAAGAGC-----------CAGTGGTTAATAAACTTCTCGCT--------------GGAGC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        49571 36 -   1784207 AGAAGAGC-----------CAGTGGTTAATGAACATCTCCCT--------------GGAGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22247450 36 + 158406734 AGAAGAGC-----------CAGTGGTTAATGAACATCTCCCT--------------GAAGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50483088 36 +  54856640 AGAAGAGC-----------CAGTGCTTACTGAACATCTCCCT--------------GAAGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       626528 36 -   2910086 AGAAGAGC-----------CAGTGGTTAATGAACAACTCCCT--------------GAAGC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40654475 36 +  42888418 AGAAGAGC-----------CAGTGGTTAATGAACATCTCCCT--------------GAAGC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             640400 31 -  36342412 ACACTAGC-----------AGGTGA-----GGACATCTTCCT--------------GACAC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81358490 61 + 145441459 TGGAAAGCAATGAAGACATTAGTAGTTAATAAGTAACTCATTTACTTCCAAGCTCAGGTGt
i mm10.chr7                 I 2 C 0
s canFam3.chr3               54415905 32 +  91889043 AGAAGAGC---------------AGTCGGTGAGTATCTCCTG--------------GAAGC
i canFam3.chr3              C 0 I 16
s dasNov3.JH570731            1805699 30 +   3943991 --GAGAAC-----------CTGAGAATGGGGG----TTCCCT--------------GAAGC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113277781 146 + 116334831 I
e proCoq1.NW_012142813v1        22909 113 +     80520 I

a score=284432.000000
s hg38.chr15_KI270850v1_alt    344233 32 +    430880 AGTACTAGACAAAGATGA-----A---AAACACATTTAAT
s panTro5.chr15              63497608 32 +  83230942 AGTACTAGACAAAGATGA-----A---AAACATATTTAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80454747 32 +  99763055 AGTACTAGACAAAGATGA-----A---AAACATATTTAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        54905 32 -   1709092 AGTACTAGACAAAGATGA-----A---AAACATATTTAAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17206713 32 - 121039945 GGTACTAGACAAAGATGA-----A---AAACATATTTAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60895234 32 + 169600520 GGTACTAGACAAAGATGA-----A---AAACAAACTTAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108421983 32 - 171882078 GGTACTAGACAAAGATGA-----A---AAACAAACTTAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        32427 30 -   2311642 GGTACTAGACAAAGATGA-----A---AAACAAAC--AAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        30596 32 -   1987038 GGTACTAGACAAAGATGA-----A---AAACAAACTTAAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21111134 32 -  24206276 GGTACTAGACAAAGATGA-----A---AAACAAACTTAAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        26308 32 -   1397330 GGTACTAGACAAAGATGA-----A---AAACAAACTTAAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        49607 26 -   1784207 GGTACTAGACAAAGATGA-----A---AAAC------AAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22247486 32 + 158406734 ATTAGTAGACAAAGATGA-----A---AAACAAATTTAAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50483124 32 +  54856640 ATTAGTAGACAAAGATGA-----A---AAACaaatttaat
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       626564 32 -   2910086 ATTAGCAGACAAAGATGA-----A---AAACAAATTTAAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40654511 32 +  42888418 ATTAGTAGACAAAGATGA-----A---AAACAAATTTAAT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             640431 31 -  36342412 ACT-CAAGACAATGACAT-----G---CAGCTCACTTACT
i otoGar3.GL873530          C 0 I 131
s mm10.chr7                  81358551 35 + 145441459 aatataaaaaaaaaaaaa-----aaCCAAACAGATTTAAC
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1805729 25 +   3943991 ---ATTAGAAGATAATGACTCATA---GAAC---------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113277781 146 + 116334831 I
e proCoq1.NW_012142813v1        22909 113 +     80520 I
e canFam3.chr3               54415937 16 +  91889043 I

a score=239133.000000
s hg38.chr15_KI270850v1_alt    344265 22 +    430880 ACATATTTAGGATAATTTATTT
s panTro5.chr15              63497640 22 +  83230942 ACATATTTAGGATAATTTATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80454779 22 +  99763055 ACATATTTAGGATAATTTATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        54937 22 -   1709092 ACATATTTAGGATAATTTATTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17206745 22 - 121039945 ACATATTTAGGATAATTTATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60895266 22 + 169600520 ACATACTTAAGATAATTTATTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108422015 22 - 171882078 ACATACTTAAGATAATTTATTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        32457 22 -   2311642 ACATACTTAAGATAATTTATTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        30628 22 -   1987038 ACATACTTAAGATAATTTATTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21111166 22 -  24206276 ACATACTTAAGATAATTTATTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        26340 22 -   1397330 ACATACTTAAGATAATTTATTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        49633 22 -   1784207 ACATACTTAAGATAATTTATTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22247518 22 + 158406734 ACACATTTAAGATGATTTATTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50483156 22 +  54856640 acatatttaagattatttattt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       626596 22 -   2910086 ACATATTTAAGATGATTTGTTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40654543 22 +  42888418 ACATATTTAAGATGATTTATTT
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81358586 22 + 145441459 ATATACTTAAGATTATGTACct
i mm10.chr7                 C 0 I 143
s dasNov3.JH570731            1805754 10 +   3943991 ------------TAACTTACTT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113277781 146 + 116334831 I
e proCoq1.NW_012142813v1        22909 113 +     80520 I
e canFam3.chr3               54415937 16 +  91889043 I
e otoGar3.GL873530             640462 131 -  36342412 I

a score=1104358.000000
s hg38.chr15_KI270850v1_alt    344287 117 +    430880 TTTAAACCTTTTAAAATATAtagagat-------ggggtcttgct---------------------------------atgtttcccaggctgggcaactcctcggct------------------------------caagccat---------------------cctgctgcctctg-----------------cttaagtgctgagCCACCCAGGCCAGCC
s panTro5.chr15              63497662 117 +  83230942 TTTAAACCTTTTAAAATATAtagagat-------ggggtcttgct---------------------------------atgtttcccaggctgggcaactcctcggct------------------------------caagccat---------------------cctgctgcctctg-----------------cttaagtgctgagCCACCCAGGCCAGCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80454801 117 +  99763055 TTTAAACCTTTTAAAATATAtagagat-------ggggtcttgct---------------------------------atgtttcccaggctgggcaactcctcggct------------------------------caagccat---------------------cctgctgcctctg-----------------cttaagtgctgagCCACCCAGGCCAGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        54959 117 -   1709092 TTTAAACCTTTTAAAATATAtagagat-------ggggtcttgct---------------------------------atgtttcccaggctgggcaactcctcgtct------------------------------caagccat---------------------cctgctgtctctg-----------------cttaagtgctgagCCACCCAGGCCAGCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17206767 118 - 121039945 TTCAAACCTTTTAAAATATAtagagatg------ggggtctcact---------------------------------atgtttcccaggctgggcaactcctcggct------------------------------caagccat---------------------cctgatgcctctg-----------------cttaagtgctgagCCACCCAGGCCAGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60895288 117 + 169600520 TTTAAACCTTTTAAAATATAtagagat-------ggggtctcgct---------------------------------atgtttcccaggttgggcaactcctgggct------------------------------caagccat---------------------cctgctgcctctg-----------------cttaagtgctgagCCACCAAGGCCAGCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108422037 117 - 171882078 TTTAAACCTTTTAAAATATAtagagat-------ggggtctcgct---------------------------------atgtttcccaggttgggcaactcctgggct------------------------------caagccat---------------------cctgctgcctctg-----------------cttaagtgctgagCCACCAAGGCCAGCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        32479 117 -   2311642 TTTAAACCTTTTAAAATATAtagagat-------ggggtctcgct---------------------------------atgtttcccaggttgggcaactcctgggct------------------------------caagccat---------------------cctgctgcctctg-----------------cttaagtgctgagCCACCAAGGCCAGCC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        30650 117 -   1987038 TTTAAACCTTTTAAAATACAtagagat-------ggggtctcgct---------------------------------atgtttcccaggttgggcaactcctgggct------------------------------caagccat---------------------cctgctgcctctg-----------------cttaagtgctgagCCACCAAGGCCAGCC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21111188 117 -  24206276 TTTAAACCTTTTAAAATACAtagagat-------ggggtctcgct---------------------------------atgtttcccaggttgggcaactcctgggct------------------------------caaaccat---------------------cctgctgcctctg-----------------cttaagtgctgagCCACCAAGGCCAGCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        26362 117 -   1397330 TTTAAACCTTTTAAAATACAtagagat-------ggggtctcgct---------------------------------atgtttcccaggttgggcaactcctgggct------------------------------caagccat---------------------cctgctgcctctg-----------------cttaagtgctgagCCACCAAGGCCAGCC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        49655 117 -   1784207 TTTAAACCTTTAAAAATATAtagagat-------ggggtctcgct---------------------------------atgtttcccaggttgggcaactcctgggct------------------------------caagccat---------------------cctgctgcctctg-----------------cttaagtgttgagCTACCAAGGCCAGCC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22247540 115 + 158406734 TTTAAACCTTTTT-AATATAtggagat--------gggtcttgct---------------------------------atgtttcccaggctgggcaactcctgggct------------------------------caagccat---------------------cctgctgcctctg-----------------cttaagtgctgagCCACCCAGGCCAGCC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50483178 116 +  54856640 tttaaaCTTCTTTAAATATAtggagat--------gggtcttgct---------------------------------atgtttcccaggctgggcaactcctgggct------------------------------caagccat---------------------cctgctgcctctg-----------------cttaagtgctgagCCACCCAGGCCAGCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       626618 116 -   2910086 TTTAAACCTTTTTAAATATAtggagat--------gggtctcact---------------------------------atgtttcccaggctgggcaactcctgggct------------------------------caagccat---------------------cctgctgcctctg-----------------cttaagtgctgagCCACCCAGGCCAGCC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40654565 116 +  42888418 TTTAAACCTTTTTAAATATAtggagat--------gggtctcgct---------------------------------atgtttcccaggctgggcaactcctgggct------------------------------caagccat---------------------cctgctgcctctg-----------------cttaagtgctgagCCACCCAGGCCAGCC
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81358751 224 + 145441459 TTAAAACAATTTAAGAtttatttttatgtatataggtgtcttgcctgcacatacgtttgtgcactgtgtgcatgcctgatgcctcaaaggctagagagggtttggatccccaggaactggagctacagataatcataacatgccataagtgtggtaggaactgaatacccaggtcctctggaagagcaaccagtgctcttaaccactgagccatctc-tccagtc
i mm10.chr7                 I 143 I 3
s dasNov3.JH570731            1805764  21 +   3943991 ----------------------------------------------------------------------------------------------CCAATTTCTGGTTT------------------------------TAAATGA--------------------------------------------------------------------------------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113277781 146 + 116334831 I
e proCoq1.NW_012142813v1        22909 113 +     80520 I
e canFam3.chr3               54415937  16 +  91889043 I
e otoGar3.GL873530             640462 131 -  36342412 I

a score=52018.000000
s hg38.chr15_KI270850v1_alt    344404 8 +    430880 TAAGATTa
s panTro5.chr15              63497779 8 +  83230942 TGAGATTa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80454918 8 +  99763055 TAAGATTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        55076 8 -   1709092 TAAGATTA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17206885 8 - 121039945 TAAGATTa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60895405 6 + 169600520 TAAGAT--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108422154 6 - 171882078 TAAGAT--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        32596 6 -   2311642 TAAGAT--
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        30767 6 -   1987038 TAAGAT--
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21111305 6 -  24206276 TAAGAT--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        26479 6 -   1397330 TAAGAT--
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        49772 6 -   1784207 TAAGAG--
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22247655 6 + 158406734 TAAGAT--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50483294 6 +  54856640 TAAGAT--
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       626734 6 -   2910086 TAAGAT--
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40654681 6 +  42888418 TAAGAT--
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             640593 6 -  36342412 TAAGAT--
i otoGar3.GL873530          I 131 C 0
s mm10.chr7                  81358978 6 + 145441459 TAAGAC--
i mm10.chr7                 I 3 I 2
s dasNov3.JH570731            1805785 5 +   3943991 -AAAAT--
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113277781 146 + 116334831 I
e proCoq1.NW_012142813v1        22909 113 +     80520 I
e canFam3.chr3               54415937 16 +  91889043 I

a score=1503629.000000
s hg38.chr15_KI270850v1_alt    344412 110 +    430880 aatttaaatgtcagaaccttaaggattcctaagagaccaggacatct----ggtgacactcctcactttagaggttgacAAAT-GGACCCCTCCTTCCCCAGTGCATCCCTGACT
s panTro5.chr15              63497787 110 +  83230942 aatttaaatgtcagaaccttaaggattcctaagagaccaggacatct----ggtgacattccttaccttagaggttgacAAAT-GGACCCCTCCTTCCCCAGTGCATCCCTGAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80454926 110 +  99763055 AATTTAAATGTCAGAACCTTAAGGATTCCTAAGAGACCAGGACATCT----GGTGACATTCCTTACCTTAGAGGTTGACAAAT-GGACCCCTCCTTCCCCAGTGCATCCCTGAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        55084 110 -   1709092 AATTTAAATGTCAGAACCTTAAGGATTCCTAAGATACCAGGACATCT----GGTGACATTCCTTACCTTAGAGGTTGACAAAT-GGACCCCTCCTTCCCAAGTGCATCCCTGAGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17206893 110 - 121039945 aatttaaatgtcagaaccttaaggattcctaagagaccaggacatct----ggtgacattccttaccttagaggttgacAAAT-GGACCCCTTCTTCCCCAGTGCATCCCTGAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60895411 110 + 169600520 AATTTAAATGTCAGAACCTTAAGGATTCCTAAGAGACCAGGACATCT----GGTGACATTCCTTACCTTAGAGGTTGACAAAT-GGACCCCTCCTTCCCCAGTGCATCCGTGAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108422160  98 - 171882078 AATTTAAATGTCAGAACCTTAAGGATTCCTG------------TCCT----GGTGACATTCCTTACCTTAGAGGTTGACAAAT-GGACCCCTCCTTCCCCAGTGCATCCATGAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        32602 110 -   2311642 aatttaaatgtcagaaccttaaggattcctaagagaccaggacatct----ggtgacattccttaccttagaggttgacAAAT-GGACCCCTCCTTCCCCAGTGCATCCGTGAGT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        30773 110 -   1987038 aatttaaatgtcagaaccttaaggattcctaagagaccaggacatct----ggtgacattccttaccttagaggttgacAAAT-GGACCCCTCCTTCCCCAGTGCATTCGTGAGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21111311 110 -  24206276 AATTTAAATGTCAGAACCGTAAGGATTCCTAAGAGACCAGGACATCT----GGTGACATTCCTTACCTTAGAGGTTGACAAAT-GGACCCCTCCTTCCCCAGTGCATCTGTGAGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        26485 110 -   1397330 aatttaaatgtcagaaccttaaggattcctaagagaccaggacatct----ggtgacattccttaccttagaggttgacAAAT-GGACCCCTCCTTCCCCAGTGCATCCGTGAGT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        49778 110 -   1784207 AATTTAAATGTCAGAACCTTAAGGATTCCTAAGAGACCAGGACATTT----GGTGACATTCCTTACCTTAGAGGTTGACAAAT-GGACCCCTCCTTCCCCAGTGCATCCGTGAGT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22247661 110 + 158406734 aatttaaatgccagaaccttaaggattcctaagagaccaggacatct----ggtgacatcccttaccttagaggttgacAAAT-AGACCCCTCCCACCCCAGTGTATCCCTGAGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50483300 111 +  54856640 aatttaaatgtcagaaccttaaggattcctaggagaccaggaaatct----ggtgacatcccttaccttagaggttgacAAATAAGACCTCTCCCTCCCCAGTGTATCCCTGAGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       626740 108 -   2910086 aatttaaatgtcagaaccttaaggattcct--gagaccagtacatct----ggtgacatcctttaccttagaggttgacAAAT-AGACCCCTCCCTCCCCAGTGTATCCCTGAGT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40654687 109 +  42888418 aatttaaatgtcagaaccttaa-gattcctaagagaccaggacatct----ggtgacatcccttaccttagaggttgacAAAT-AGACCCCTCCCTCCCCAGTGTATCCCTGAGT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113277927 107 + 116334831 aatttaaatgacagaaccaaaaggattcctaagaggccggaacacct----ggggacatcccttaccttagaggttgacAAGT-GGA-CACCC-CCCCCCAG-ACCTCCCTGAGT
i micMur3.chr9              I 146 C 0
s proCoq1.NW_012142813v1        23022 109 +     80520 aatttaaatgacagaaccttaaggattcctaagagaccaggacatct----gggaacatcccttaccttggaggttgacAAGT-GGACCACCCACCCCCCAG-GACACCCTGGGT
i proCoq1.NW_012142813v1    I 113 C 0
s otoGar3.GL873530             640599  68 -  36342412 AATTTAAATGACAGA---------ATTTTT------------------------GACATCCTTTACCTTAGAGGTTGACAAGT-GGACCACCCACCCCCTGG-------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81358986  96 + 145441459 --TTTAAATGACAGAAACTAAAGGACTTCAAAGAGATCATAGCAGAT---CAGAGATATCCTACACCTTAGAAGTTAACAACT-AGACTACCT-------------ACCCTGAAT
i mm10.chr7                 I 2 C 0
s dasNov3.JH570731            1805790 114 +   3943991 AGTTTCAGTGACAGAACTTTAAGGATTTGTAAGAGACTGGGACACTTACTTAGAGGCATCCTTTATTTTTGGGGTCAACAAAT-GGACCACACATCCCCCAGTGTATCCCCAAGT
i dasNov3.JH570731          C 0 C 0
e canFam3.chr3               54415937  16 +  91889043 I

a score=5940148.000000
s hg38.chr15_KI270850v1_alt    344522 393 +    430880 ATACCAATCAGAAAGCCTCAG-GGAAGAAAGCTCCAGCATGAGT--TGTGTCTG-AT-GGTCTTTGAATTAGAATGTggagagggtagacaaaattctggatatcccttccagagtttctcttgagga-catccacCCGTG-GAAAAAGTAAAAGCAAGAGCAGCACACAGCCAGTCTCCACGGAACGGCACAAGTGAGAGATGGAGCCAGCT-CCTTGTGCTGTGGCACAT--GCATGTG--CCAGATAACCTGCCTCTTTCCTCTCCACTCAGCCTCAA-GAAGTTCCTGAGTCTGTTCCCATTAGTATTT-ACTCCACAGAA-AGATAATTCTTTGCAGATCTGGAGACTTCACCATGCAACCAAG---CCTCCTCT--AGACAGTTCAC--AAGTG----TGTGAACTAAGGTCA
s panTro5.chr15              63497897 393 +  83230942 ATACCGATCAGAAAGCCTCAG-GGAAGAAAGCTCCAGCATGAGT--TGTGTCTG-AT-GGTCTTTGAATTAGAATGTGGGGAGGGTAGACAAAATTCTGGGCATCCCTTCCAGAGTTTCTCTTGAGGA-CATCCACCCGTG-GAAAAAGTAAAAGCAAGAGCAGCACACAGCCAGTCTCCACGGAACGGCACAAGTGAGAGATGGAGCCAGCT-CCTTGTGCTGTGGCACAT--GCGTGTG--CCAGATAAACTGCCTCTTTCCTCTCCACTCAGCCTCAA-GAAGTTCCTGAGTCTGTTCCCATTAGTATTT-ACTCCACAGAA-AGATAATTCTTTGCAGATATGGAGACTTCACCATGCAACCAAG---CCTCCTCT--AGACAGTTCAC--AAGTG----TGTGAACTAAGGTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80455036 393 +  99763055 ATACCGATCAGAAAGCCTCAG-GGAAGAAAGCTCCAGCATGAGT--TGTGTCTG-AT-GGTCTTTGAATTAGAATGTGGGGAGGGTAGACAAAATTCTGGGCATCCCTTCCAGAGTTTCTCTTGAGGA-CATCCACCCGTG-GAAAAAGTAAAAGCAAGAGCAGCACACAGCCAGTCTCCACGGAACGGCACAAGTGAGAGATGGAGCCAGCT-CCTTGTGCTGTGGCACAT--GCGTGTG--CCAGATAACCTGCCTCTTTCCTCTCCACTCAGCCTCAA-GAAGTTCCTGAGTCTGTTCCCATTAGTATTT-ACTCCACAGAA-AGATAATTCTTTGCAGATATGGAGACTTCACCATGCAACCAAG---CCTCCTCT--AGACAGTTCAC--AAGTG----TGTGAACTAAGGTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        55194 393 -   1709092 ATACCGATCAGAAAGCCTCAG-GGAAGAAAGCTCCAGCATGAGT--TGTGTCTG-AT-GGTCTTTGAATTAGAATGTGGGGAGGGTAGACAAAATTCTGGACATCCCTTCCAGAGTTTCTCTTGAGGA-CATCCACCCGTG-GAAAAAGTAAAAGCAAGAGCAGCACACAGCCAGTCTCCACGGAACGGCACAAGTGAGAGACGGAGCCAGCT-CCTTGTGCTGTGGCACAT--GCATGTG--CCAGATAACCTGCCTCTTTCCTCTCCACTCAGCCTCAA-GAAGTTCCTGAGTTTGTTCCCATTAGTATTT-ACTCCATAGAA-AGATAATTCTTTGCAGATCTGGAGACTTCACCATGCAACCAAG---TCTCCTCT--AGACAGTTCAC--AAGTG----TGTGAACTAAGGTCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17207003 393 - 121039945 ATACCAATCAGAAAGCCTCGG-GGAAGAAAGCTCCAGCATGAGT--TGTGTCTG-AC-GGTCTTTGAATTAGAATGTGGGGAGGGTAGACAAAATGCTGGACATCCCTTCCAGAGTTTCTCTTGAGGA-CATCCACCCATG-GAAAAAGTAAAAGCAAGAGCAGCACACAGCCAGTCTCCACGGAATGGCACAAGTGAGAGACAGAGCCAGCT-CCTTGTGCTGTGGCACAT--GCATGTG--CCAGATTACCTGCCTCTTTCCTCTCCACTCAGCCTCAA-GAAGTTCCTGAATTTGTTCCCATTAGTATTT-ACTCCACAGAA-AGATAATTCTTTGCAGATCTGGAGACTTCACCATGCAACCAAG---CCTCCTCT--AGACAGTTCAC--AAGTG----TGTGAACTAAGGTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60895521 393 + 169600520 GTACCAATCAGAAAGCCTCGG-GGAAGAAAGGTCCAGCATGAGT--TGTGTCTG-AC-TGTCTTTGAATTAGAATGTGGAGAGGGTAGACAAAATTCTGGACATCCCTTCCAGAGCTTCTCTTGAGGA-CATCCACCCGTG-GAAGAAGTAAAAGCAAGAGCAGCACACAGCCAGTCTCCATGGAAGGGCACAAGTGAGAGACAGAGCCAGCC-CCTTGTGCTGTGGCACAT--GCATGTG--CCAGATTATCTGCCTCTTTCCTCTCCACTCAGCCTCAA-GAAGTTCCTGAGTTTGTTCCCATTAGCACTT-ACTCCACAGAA-AGATAATTCTTTGCAGATCTGGAGACTTCACCATGCAACCAAG---CCTCCTCT--AGACAGTTCAC--AAGCG----TGTGAACTAAGGTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108422258 393 - 171882078 GTACCAATCAGAAAGCCTCGG-GGATGAAAGGTCCAGCATGAGT--TGTGTCTG-AC-TGTCTTTGAATTAGAATGTggagagggtagacaaaattctggacattccttccagagtttctcttgagga-catccacCCGTG-GAAGAAGTAAAAGCAAGAGCAGCACACAGCCAGTCTCCATGGAAGGGCACAAGTGAGAGACAGAGCCAGCC-CCTTGTGCTGTGGCACAT--GCATGTG--CCAGATTATCTGCCTCTTTCCTCTCCACTCAGCCTCAA-GAAGTTCCTGAGTTTGTTCCCATTAGCACTT-ACTCCACAGAA-AGATAATTCTTTGCAGATTTGGAGACTTCACCATGCAACCAAG---CCTCCTCT--AGACAGTTCAC--AAGCG----TGTGAACTAAGGTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        32712 393 -   2311642 GTACCAATCAGAAAGCCTCGG-GGAAGAAAGGTCCAGCATGAGT--TGTGTCTG-AC-TGTCTTTGAATTAGAATGTggagagggtagacaaaattctggacatcccttccagagtttctcttgagga-catccacCCATG-GAAGAAGTAAAAGCAAGAGCAGCACACAGCCAGTCTCCATGGAAGGGCACAAGTGAGAGACAGAGCCAGCC-CCTTGTGCTGTGGCACAT--GCATGTG--CCAGATTATCTGCCTCTTTCCTCTCCACTCAGCCTCAA-GAAGGTCCTGAGTTTGTTCCCATTAGCACTT-ACTCCACAGAA-AGATAATTCTTTGCAGATCTGGAGACTTCACCATGCAACCAAG---CCTCCTCT--AGACAGTTCAC--AAGCG----TGTGAACTAAGGTCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        30883 393 -   1987038 GTACCAATCAGAAAGCCTCGG-GGAAGAAAGGTCCAGCATGAGT--TGTGTCTG-AC-TGTCTTTGAATTAGAATGTggagagggtagacaaaattctggacatcccttccagagtttctcttgagga-catccacCCGTG-GAAGAAGTAAAAGCAAGAGCAGCACACAGCCAGTCTCCATGGAAGGGCACAAGTGAGAGACAGAGCCAGCC-CCTTGTGCTGTGGCACAT--GCATGTG--CCAGATTATCTGCCTCTTTCCTCTCCACTCAGCCTCAA-GAAGTTCCTGAGTTTGTTCCCATTAGCACTT-ACTCCACAGAA-AGATAATTCTTTGCAGATCTGGAGACTTCACCATGCAATCAAA---CCTCCTCT--AGACAGTTCAC--AAGCG----TGTGAACTAAGGTCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21111421 393 -  24206276 GTACCAATCAGAAAGCCTCGG-GGAAGAAAGCTCCAGCATGAGT--TGTGTCTG-AC-TGTCTTTGAATTAGAATGTGGAGAGGGTAGACAAAATTCTGGACATCCCTTCCAGAGTTTCTCTTGAGGA-CATCCACCCATG-GAAGAATTAAAAGCAAGAGCAGCACACAGCCAGTCTCCATGGAAGGGCACAAGTGAGAGACAGAGCCAGCC-CCTTGTGCTGTGGCACAT--GCATGTG--CCAGATTATCTGCCTCTTTCCTCTCCACTCAGCCTCAA-GAAGTTCCTGAGTTTGTTCCCAGTAGCACTT-ACTCCACAGAA-AGATAATTCTTTGCAGATCTGGAGACTTCACCGTGCAACCAAG---CCTCCTCT--AGACAGTTCAC--AAGCG----TGTGAACTAAGGTCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        26595 393 -   1397330 GTACCAATCAGAAAGCCTCAG-GGAAGAAAGGTCCAGCATGAGT--TGTGTCTG-AC-TGTCTTTGAATTAGAATGTggagagggtagacaaaattctggacatcccttccagagtttctcttgagga-catccacCCGTG-GAAGAAGTAAAAGCAAGACCAGCACACAGCCAGTCTCCATGGAAGGGCACAAGTGAGACACAGAGCCAGCC-CCTTGTGCTGTGGCACAT--GCATGTG--CCAGATTATCTGCCTCTTTCCTCTCCACTCAGCCTCAA-GAAGTTCCTGAGTTTGTTCCCATTAGCACTT-ACTCCACAGAA-AGATAATTCTTTGCAGATCTGGAGACTTCACCATGCAACCAAG---CCTCCTCT--AGACAGTTCAC--AAGCG----TGTGAACTAAGGTCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        49888 393 -   1784207 GTACCAATCAGAAAGCCTCGG-GGAAGAAAGCTCCAGCATGAGT--TGTGTCTG-AC-CGTCTTTGAATTAGAATGTggagagggtagacaaaattctggacatcccttccagagtttcttttgagga-catccacCCGTG-GAAGAAGTAAAAGCAAGAGCAGCACACAGCCAGTCTCCATGGAAGGGCACAAGTGAGAGACAGAGCCAGCC-CCTTGTGCTGTGGCACAT--GCATGTG--CCAGATTATCTGCCTCTTTCCTCTCCACTCAGCCTCAA-GAAGTTCCTGAGTTTGTTCCCATTAGCACTT-ACTCCACAGAA-AGATAATTCTTTGCAGATCTGGAGACTTCACCGTGCAACCAAG---CCTCCTCT--AGACAGTTCAC--AAGCG----TGTGAACTAAGGTCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22247771 390 + 158406734 GTACCAATCAGAAAGCCTCAG-GGAAGAAAGTTCCAGCATGACT--TGTGTCTG-AC-CGTCTTTGAATTAGAATGGGGAGAGGGTAGACAAAATTCTGGACATCCCTTCC--AGTTTCTCCTGAGGA-CATCCACCCGTG-AAAGAGGTAAAAGCAAGAGTAGCATACAGCCAGTCTCCATGGAAGGGCACGAGTGGGAGGCAGAGCCAGCC-TCTTGTGCTGTGGCACAT--GCGTGTG--CCAGAGTATCTGCTTCTATCCTCTCCACTCAGCCTCAA-GAAATTGCTGAGTTTGTTCCCATTAGTACTT-ACTCCACAGAA-ATATAATTATTTGCA-ATCTGGAGACTTCACCATGCAACCAAG---CCTCCTTT--AGAAGGTTCAC--AAGCG----TGTGAACTAAGGTCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50483411 393 +  54856640 GTACCAATCAGAAAGCCTCAG-GGAAGACAGCTCCAGCATGACT--TGTGTCTG-AC-TGTCTTTGAATTAGAATGAGGAGAGGGTAGACAAAATTCTGGACATCGCTTCCAGAGTTTCTCTTGAGGA-CATCCACCCGTG-GAAGAGGAAAAAGCAAGAGTAGCATACAGCCAGTCTCCACGGAAGGGCACAAGTGGGAGGCAGAGCCAGCC-TCTTGTGCTGTGGCACAT--GCGTGTG--CCagattatctgcttctttcctctcctctcagcctcaa-gaaattcctgagtttgttcccattagtactt-actccacagaa-atgtaattatttgcagatctggggacttcaccatgcaaccaag---cctcctct--agaaggttcac--aagtg----tgtgaactaagGTCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       626848 393 -   2910086 GTACCAATCAGAAAGCCTCAA-GGAAGACAGCTCCAGCATGACT--TGTGTCTG-AC-TGTCTTTGAATTAGAACAGGGAGAGGGTGGACAAAATTCTGGACATCCCTTCCAGAGTTTCTCTTGAGGA-CATCCACCCGTG-GAAGAGGTAAAAGCAAGGGTAGCATACAGCCAGTCTCCATGGAAGGGCACGAGTGGGAGGCAGAGCCAGCC-TCTTGTGCTGTGACACAT--GCGTGTG--CCAGATTATCTGCTTCTTTCCTCTCCACTCAGCCTCAA-GAAATTCCTGAGTTTGTTCCCATCAGTACTT-ACTCCACAGAA-ATATAATTATTTGCAGATCTGGGGACTTCACCATGCAACCAAG---CCTCCTCT--AGAAGGTTCAC--ACGCA----TGTGAACTAAGGTCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40654796 390 +  42888418 GTACCAATCAGAAAGCCTCAG-GGAAGAAAGCTCCAACATGACT--TGTGTCTG-AC-TGTCTTTGAATTAGAATGGGGAGAGGGTAGACAAAATTCTGGACATCCCTTCCAGAGTTTC---TGAGGA-CATCCACCCGTG-GAAGAGGTAAAAGCAAGAGTAGCATACAGCCAGTCTCCATGGAAGGGCACGAGTGGGAGTCAGAGCCAACC-TCTTGTGCTGTGGCACAT--GCATGTG--CCAGATTATCTGCTTCTTTCCTCTCCACTCAGCCTCAA-GAAATTCCTGAATTTGTTCCCATTAGTACTT-ACTCCACAGAA-ATATAATTATTTGCAGATCTGGAGACTTCACCATGCAACCGAG---CCTCCTCT--AGAAGGTTTAC--AAGCG----TGTGAACTAAGGTCA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113278034 394 + 116334831 GCACCTATCAGAAAACCTTGG-GAAAGAAAGCTCTAGCATGGGT--TATGTCTG-ACATGTCTTTGAATTAGAAAGTGGGGAGGACAGACAAAATCCTGGGCATCATCTCTGGGGTTTCTCTTGAGGA-CACCCACTCATG-AAAGAACTAAAGGCAAGAGCAACACA----CAATCTCCACAGAAGGGCACAAATGACAGATGGATCCAAGT-CCTTACGCTGTGGCACAG--CGCTGTGCACCAGACTATCTGCCTCCTTCCTCTCCACTTAGCCTCAAAGAAGTTCCAGCGTCTGTCCCCATTAGCACTTAACTCCACAGAA-ATACCATTCTTTGCAGAGCTGGAGACTCTGCCATGCAACCAAG---CCTCTTTT--AGACAGTTCAC--AAGTG----TGTGACCTAAGATCA
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        23131 401 +     80520 GTACCTATCAGAAAACCTTGGAGGAAGAAAGCTCTAGCGTGGGT--TGTGTCTG-ACATGTCTTTGAATTAGAAAGCGGGGAGGGGAGACAAAATTCTGGGCATCATCTCCAGGGTTTCTCTTGAGAA-CACCCACTCATG-AAAGAACTAAAGGCAAGAGCAACACACAGGCAGTCTCCACATAAGGGCACAAGCGAGAGATGGGTCCAAGC-CCTTATGCTATGGCACAG--CCCTTTGCACCAGACTATCTGCCTCCCTCCTCTCCACTCGGCCTCAAAAACGTTCCGAGGTTTGTCCCCATTAGCACATAACTCCACAGAA-AGATCATTCTTTGCAGAGCTGGAGACTCTGCCATGCAACCAAG---CCTCTCTT--AGACAGTTCACAAAAGTG----TGTGAACTAAGGTCA
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             640667 376 -  36342412 GTACCAATCAGAAAACCTGGG-GGAAGAAAGCTCCAGCATGTGT----CGTCTG-ACATGTCTTTGAATTAGAAA----GGAAGGTAGATGAAATTCTGGGCATTATTTCCAGGGTTTCTCTGGAGGGTCACCCACTCATG-AAAGACAT------AAGAGCAACACATACACAGTCTCCACAGAAGGGCACAAGTGAGAGATGGCTCCAA---CTGGACGCTGTGGCATAG--CACTGTGCACCACACTGTCTGCCTCCATCCTTTCCACTCAGCCTCAACAAAGTTCCTGAGTTTGTTCCCAGTAGCATTT-ACTCCACAGAA-AGAACATTCTTTGCAGATCTGGAGACTTC--------ACTAAG---CCTCTTTT--AGACATTTCAC--CAGTG----TGTGAACTGAGGTCA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81359082 346 + 145441459 GTACCAATCAAAATATCTCAG-GGCAAAAAGTCAGAAAATGAAC--TTTGAGTGCAA-TGACTTTCAATTAAAAATAAGGAACAGCAGACAAAACTGTAGACATTATTTTCAAGGTTTT-------GT-CTTT--CTTATG-CAACAATCAAAAACAAG-------------CCTTTTCCACAGAAGCCCAC-AGTAAGAGGTGGGGCCAGCCATCTTCTGCTGCAGCACA---GCCTGTGCACCAGGCTGTCTGCTTCCT-----TCAACTCAATCTCAA-GGCTGTCCT--------------------TT-ATTCTACAGAACACATGGCTCTTT--AGACCTG--GACTTTACCAGACTATCAAA---CCCTCTTCCAAAAGAGTTCAT--CACTG----TGTGAAA-AAGGTCA
i mm10.chr7                 C 0 I 256
s canFam3.chr3               54415953 357 +  91889043 ATACCAAACAGAAAGCCTCAG-GGAAAATAGCTCCAGCATAGGTTATATATCTC-ACAGGTTTCTGAATTAGAAAGGGGAAAGG-----TGGAATTCTGGGCATCACTTCCAGGGTATCTCCTGAAGA-TGCCCACCCGTGAAAAGAATCAAAAGCTACACTGGTACACAGCCAACCTCCATGAAAGACCACAAGGAAGAGATGCCTCCAACC-CCATACG----GGCACA-------GCG----------------TCTTTCCTCTCTGTTCAGCCTCAGAGAAATTCCTGAGTTTGT-CCCATTAGTACTT-ACCCCACAAAA--------------CAGA-CCAGAGACTTCACCACACAACTAAGTC-CCTCTTCT--GGACAGTTCAC--CAGTC----TAGGAACTAAGGTCA
i canFam3.chr3              I 16 C 0
s dasNov3.JH570731            1805904 372 +   3943991 GTACCAGTAAGACAGCC-------------ATTCCAGTACAGAT--T-TTTCTG-ACATGTCTTT-AAGTAGGAAGTGGAGAGA-CAGacaaaattctgggcatcatccccagagtttctCTTGAGGA-CACTTACCTATG-AAAGAATTAAAAGCAACAGCAGCACACAGCCAGTCTTCACAGAAGAGCACAAACGTGGGGTGGCTTCAACA-CCTTATG----GGCACATCCCCAAGTG--CCAGTTTATCTA-------CCTTTCCTCTCAG-----A-GGAGTTTCTGAGTTTGTTCTCATTAGCACTT-AC-CCACAGAACAGATCATTCTTTGCAGATCTGGAGACCTCACCATGCAACCACAACTCCTCTTCT--GGATGGTTCAT--CAGTGTCACTGTGAACTAAGGTCA
i dasNov3.JH570731          C 0 C 0

a score=296823.000000
s hg38.chr15_KI270850v1_alt    344915 21 +    430880 CTTCCTCTCTGCTCCCAAAAT
s panTro5.chr15              63498290 21 +  83230942 CTTCCTCTCTGCTCCCAAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80455429 21 +  99763055 CTTCCTCTCTGCTCCCAAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        55587 21 -   1709092 CTTCCTCTCTGCTCCCAAAAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17207396 21 - 121039945 CTTCCTCTCTGCTCCCAAAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60895914 21 + 169600520 CTTCCTCTGTGCTCCCAGAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108422651 21 - 171882078 CTTCCTCTGTGCTCCCAGAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        33105 21 -   2311642 CTTCCTCTGTGCTCCCAGAAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        31276 21 -   1987038 CTTCCTCTGTGCTCCCAGAAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21111814 21 -  24206276 CTTCCTCTGTGCTCCCAGAAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        26988 21 -   1397330 CTTCCTCTGTGCTCCCAGAAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        50281 21 -   1784207 CTTCCTCTCTGCTCCTAGAAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22248161 21 + 158406734 CTTCCTCTCTGCTCCCAGAAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50483804 21 +  54856640 CTTCCTCTCTGCTCCCAGAAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       627241 21 -   2910086 CTTCCTCTCTGCTCCCAGAAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40655186 21 +  42888418 CTTCCTCTCTGCTCCCAGAAT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113278428 21 + 116334831 CTTCCATTCTGCTCCCACAAT
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        23532 19 +     80520 CTTTC--TCTCCTCCCAGAAT
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             641043 17 -  36342412 CTTCC--TCTGCTCCAAGA--
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54416310 21 +  91889043 CATACTCCCTGTGCCCAGAAC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1806276 21 +   3943991 CTTACTCTCTGCTTTCAGACT
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81359428 256 + 145441459 I

a score=7811473.000000
s hg38.chr15_KI270850v1_alt    344936 421 +    430880 GAGGCCTC------------------------AGGCCTCACACATGCTCA-AGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCGAGGAGGTCCCAGGACGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCTCTGGGACCACCCCCTGACAGAGACAGGAAGGGCAGAGGTGGAGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAGACAGGG---TTTTAAAGGCTAGTTTTGTTATAAAGT-AATAATCACAT----TATAGAAATTATTAAAAACATCCAATAGA--------------CATTTAGCATTTGATATATATT-CTTTTAGACTTTCTT
s panTro5.chr15              63498311 421 +  83230942 GAGGCCTC------------------------AGGCCTCACACATGCTCA-CGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGTTTCGAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCTCTGGGACCACCCCCTGACAGAGACAGGAAGGGCAGAGGTGGAGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAGACAGAG---TTTTAAAGGCTAGTTTTGTTATAAAGT-AATAATCACAT----TATAGAAATTATTAAAAACATCCAATAGA--------------CATTTAGCATTTGACATATATT-CTTTTAGACTTTCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80455450 421 +  99763055 GAGGCCTC------------------------AGGCCTCACACATGCTCA-CGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGTTTCGAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCTCTGGGACCACCCCCTGACAGAGACAGGAAGGGCAGAGGTGGAGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAGACAGAG---TTTTAAAGGCTAGTTTTGTTATAAAGT-AATAATCACAT----TATAGAAATTATTAAAAACATCCAATAGA--------------CATTTAGCATTTGACATATATT-CTTTTAGACTTTCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        55608 421 -   1709092 GAGGCCTC------------------------AGGCCTCACACATGCTCA-AGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCGAGGAGGTCCCAGGATGGCCATACGGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCTCTGGGACCACCCGCTGTCAGAGACAGGAAGGGCAGAGGTGGAGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAGACAGGG---TTTTAAAGGATAGTTTTGTTATAAAGT-AATAATCACAT----TATAGAAATTATTAAAAACATCCAATAGA--------------CATTTAGCATTTGATATATATT-CTTTTAGACTTTCTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17207417 421 - 121039945 GAGGCCTC------------------------AGGCCCCACACATGCTCA-AGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCGAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCTCTGGGACCACCCCCTGTCAGAGACAGGAAGGGCAGAGGTGGAGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAGACAGGG---TTTTAAAGGATAATTTTGTTATAAAAT-AACAATCACAT----TATAGAAATTATTAAAAACATCCAATAGA--------------CATTTAGCATTTGATATATATT-CTTTTAGACTTTCTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60895935 421 + 169600520 GAGGCCTC------------------------AGGCCCCACACATGCTCA-AGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCGAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCCCTGGGACCACCCCCTGTCAGAGACAGGAAGGGCAGAGGTGGGGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAGACAGGG---TTTTAAAGGACAGTTTTGTTATAAAGT-AATAATCACAT----TATAGAAATTATTAAAAACATCCAACAGA--------------CATTTAGCATTTGATATATATT-CTTTTAGACTTTCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108422672 421 - 171882078 GAGGCCTC------------------------AGGCCCCACACACGCTCA-AGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCGAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCCCTGGGACCACCCCCTGTCAGAGACAGGAAGGGCAGAGGTGGGGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAGACAGGG---TTTTAAAGGACAGTTTTGTTATAAAGT-AATAATCACAT----TATAGAAATTATTAAAAACATCCAACAGA--------------CATTTAGCATTTGATATATATT-CTTTTAGACTTTCTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        33126 421 -   2311642 GAGGCCTC------------------------AGGCCCCACACATGCTCA-AGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCGAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCCCTGGGACCACCCCCTGTCAGAGACAGGAAGGGCAGAGGTGGGGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAGACAGGG---TTTTAAAGGACAGTTTTGTTATAAAGT-AATAATCACAT----TATAGAAATTATTAAAAACATCCAACAGA--------------CATTTAGCATTTGATATATATT-CTTTTAGACTTTCTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        31297 421 -   1987038 GAGGCCTC------------------------AGGCCCCACACATGCCCA-AGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCGAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCCCTGGGACCACCCCCTGTCAGAGACAGGAAGGGCAGAGGTGGGGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAGACAGGG---TTTTAAAGGACAGTTTTGTTATAAAGT-AATAATCACAT----TATAGAAATTATTAAAAACATCCAACAGA--------------CATTTAGCATTTGATATATATT-CTTTTAGACTTTCTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21111835 421 -  24206276 GAGGCCTC------------------------AGGCCCCACACATGCTCA-AGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCGAGGAGGTCCCAGGACGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCCCTGGGACCACCCCCTGTCAGAGACAGGAAGGGCAGAGGTGGGGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAGACAGGG---TTTTAAAGGACAGTTTTGTTATAAAGT-AATAATCACAT----TATAGAAATTATTAAAAACATCCAACAGA--------------CATTTAGCATTTGATATATATT-CTTTCAGACTTTCTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        27009 421 -   1397330 GAGGCCTC------------------------AGGCCCCACACATGCCCA-AGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCGAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCCCTGGGACCACCCCCTGTCAGAGACAGGAAGGGCAGAGGTGGGGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAGACAGGG---TTTTAAAGGACAGTTTTGTTATAAAGT-AATAATCACAT----TATAGAAATTATTAAAAACATCCAACAGA--------------CATTTAGCATTTGATATATATT-CTTTTAGACTTTCTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        50302 445 -   1784207 GAGGTCTCAGGCCCCATACATGCTCAAGGTGAAGGCCCCACACATGCTCA-AGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCGAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCTCTGGGGCCACCCCCTGTCAGAGACAGGAAGGGCAGAGGTGGGGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAGACAGGG---TTTTAAAGGACAGTTTTGTTATAAAGT-AATAATCACAT----TATAAAAATTATTAAAAACATCCAACAGA--------------CATTTAGCATTTGATATATATT-CTTTTAGACTTTCTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22248182 417 + 158406734 GAGGCCTC------------------------AGGCCCCACACATGCTCA-AGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCAAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAACACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCTCTGGGACCACCCCCTGTCAGAGACAGGAAGGGCAGGGGTGGGGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAGATAGGG--TTTTTAAAGGATAGTTTCATTATAAAG----TAATCACAT----TATAGAAATTATTAAAAATACCGA--AGA--------------CATTTAGCATTTGATATATATT-CTTTTAGACTTTCTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50483825 419 +  54856640 GAGGCCTC------------------------AGGCCCCACACATGCTCA-AGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCAAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCGCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCTCTGGGACCACCCCCTGTCAGAGACAGGAAGGGCAGGGGTGGGGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAGATACGG---TTTTAAAGGATAGTTTCATTATAAAGT-AATAATCACAT----TATAGAAATTATTAAAAATACCCA--CGA--------------CATTTAGCATTTGATATATATT-CTTTTAGACTTTCTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       627262 419 -   2910086 GAGGCCTC------------------------AGGCCCCACACATGCTCA-AGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCAAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCGCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCTCTGGGACCACCCCCTGTCAGAGACAGGAAGGGCAGAGGTGGGGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAGATAGGG---TTTTAAAGGATAGTTTCGTTATAAAGT-AATAATCATAT----TATAGAAATTATTAAAAATACCCA--AGA--------------CATTTAGCATTTGATATGTACT-CTTTTAGACTTTCTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40655207 419 +  42888418 GAGGCCTC------------------------AGGCCCCACACATGCTCA-AGGC------ACACTCACCTGCAGCTTGTCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCAAGGAGGTCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGGTCCATCCGAGACCCTACCCCCATCTTTAAAGGGTCTCTGGGACCACCCCCTGTCAGAGACAGGAAGGGCAGGGGTGGGGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAGATAGGG---TTTTAAAGGATAGTTTCGTTATAAAGT-AATAATCACAT----TATAGAAATTATTAAAAATACCCA--AGA--------------CATTTAGCATTTGATATACATT-CTTTTAGACTTTCTT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113278449 419 + 116334831 GGGGCCCC------------------------AGGTCCCACATGTGCTCA-AGCC------ACACTCACCTGCAGCTTGCCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAAGGGTCTTTGGGAGCTTCAAGGAGGTCCCAGGATGGCCACACAGAGGCTCCCGGCCATCTCTTTGAAGCACTGGTTGGGGAGGGAGTGACAGCAGCGAGAGCAGCTTGCTCTTGGTCCATCCGGGACCCAACCCCCATCTTTAAAGGGTCTCTGGGACCACCCCCGGTCAGAGACAGGAAGGGTAGAGGAGGGGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGAAGACAGAGG-TTTTTAAAGGACAGTTTTGTTATAAAGT-AATAATCACAT----CATAGAAAGCATGAAAAATACC----TTA---------------GTTTAGCATTTGATGTATTTTCCTTTTAGACGTTCTT
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        23551 418 +     80520 GGGCCCCT------------------------GGGTCCCACATGTGCTCA-AGCC------A-ACTCACCTGCAGCTTGCCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAAGGGTCTTTGGGAGCTTCAAGGAGGTCCCAGGATGGCCACACAGAGGCTCCTGGCCATCTCTTTGAAGCACTGGTTGGGGAAGGAGTGACAGCAGCGAGAGCAGCTTGCTCTTGGTCCATCCGGGACCCAACCCCCATCTTTAAAGGGTCTCTGGGACCACCCCCCGTCAGAGACAGGAAGGGTAGAGGAGGGGAAATGCGAAGGCTTGACTAGGGGAGGAAAAAGGGAGACAGAAG-TTTTTAAAGGACAGTTTTGTTACAAAGT-AATAGTCACAT----CAGAGAAAGTATGAAAAATACC----TTA--------------CGTTCAGCATTTGATACATTTT-CTTTTAGACTTTCTT
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             641060 403 -  36342412 ---------------------------------GGTCCCACACATGCTCA-ACCC------C-ACTCACCTGCAGCTTGCCGATGCAGCCTGGCCTCTCTTTCTATGCTGAAGGGGTCTTTGGGGGCTTCAAGGAGGTCCCAGGATGGCCACACAGAAGCCCCTGGCCATCTCTTTGAGGCGCTGGTTGGGGAGGGAGTGATTGCAGCTAGAGCAGCTTGCTCTTGGTCCATCCGGGACCCAACCCCCATCTTTAAAGGGTCTCTTGGACCCCCTCCTGTCAAAGACAGGAAGGGTAGAGGAGGGGAAATGCGAAGGCTTGACTAGAGGAGAAAAAAGGAAGACAGAGG-TTTTTAAAAGACAGCTTTGGTATAATCT-AGTAATCACAT----TATAGAAATTATGAAAAATAAC----ATT--------------CATTCAGCA--TGGTATATTTT-----TAGACTTTCTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81359684 440 + 145441459 gagGTCTC------------------------AGGCTTCACACATAGCCA-CAGTTATATGGCACTCACCTGCAGCCTGCCGGTGGAGTCTAGCCTCTCTCTCTATGCTGAATGGGTCTTTAGGAGCTCCAAGAAGGTCCCAAGATGGCCACACAGAAGCTCCTGGCCATCTCTTTGGAGCACTGGTTGGAGAGGGAGCAACTGCAGCAAGAGCAGCTTGTTCTTGGTCCATTCGGGACCCAACGCCCATCTTTAGAGGGTCTCTGGGACCATTTCCCGTCATAGAAAGAAAGGGCAGAGGAGGGGAAATGCGAAGGCTTGACTAGAGGAGGAAAAAACAGACACAAG---TTTTAAAAGACAGTTTTGTT-TAAAGT-AACGATCACAT----AACAGAAATATGAAAAAATATCTAATATAACATTTATAATTTGCATTTATATTTTGATATATTCT-CTTTCAGTCTGTCTT
i mm10.chr7                 I 256 C 0
s canFam3.chr3               54416331 411 +  91889043 AAGGCCTC------------------------AGGCCCCACGCATGGCCACATCC------ACACTCACCTGCAGCTTGCCGGTACAGCCTGGCCTCTCTTTCTATGCTGAACGGGTCTTTGGGAGCTTCGAGGAGATCCCAGGATGGCCACACAGAAGCTCCTGGCCATCTCTTGGATGCACTGGTTGGGGAGGGGCTGACCGCAGCGAGAGCAGCTTGCTCTTGGTCCATCCGGGACCCAACCCCCATCTTTAAAGGGTCTCTGGGACCACCCCCCGTCAGAGACAGGAAGGGGAGTGGAGGGGAAATTCGAAGGCTTGACTAGGGAAGCAAAAAGGAAGATACAGG-TTTTTAAAGGACAGTTTTGTTATAAAATCAATAATCATACTCTATATAGAAATTAT---------------AC--------------CAGTTAG-GTCTG--ATATTTT-CTTTTAGGCTTTCTT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1806297 420 +   3943991 GAGGCCTC------------------------AGGCCCCAAGCTTGCCCAGAGCC------ACACTCACCTGCAGCTTGCCGGTGCAGCCTGGCCTCTCTCTCTATGCTGAAGGGGTCTTTGGGAGCTTCAAGAAGGTCCCAAGATGGCCACACAGAAGCTCCCGGCCATCTCTTGGATGCACTGGTTGGGGAAGGAGTGACTGCAGCAAGAGCAGCTTGCTCTTGATCCATTCGGGACCCAACCCCCATCTTTAAAGGGTCTCTGGGACCACCCCCTGTCAGAGACAGGAAGGGCAGAGGAGGGGAAATGCGAAGGCTTGACTAGGGGAGAAAAAAGGAAGATACGGGTTTTTAAAAACACAGTTTGGTTATAAA---AGTAATCA-------TATAGAAAATATGAAAAATTCCTAATATA--------------CATTTAGTATCTGATGTATTTT-CTTTTAGACTTTCTT
i dasNov3.JH570731          C 0 I 497

a score=64470.000000
s hg38.chr15_KI270850v1_alt    345357 3 +    430880 CCT
s panTro5.chr15              63498732 3 +  83230942 CCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80455871 3 +  99763055 CCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        56029 3 -   1709092 CCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17207838 3 - 121039945 CCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60896356 3 + 169600520 CCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108423093 3 - 171882078 CCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        33547 3 -   2311642 CCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        31718 3 -   1987038 CCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21112256 3 -  24206276 CCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        27430 3 -   1397330 CCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        50747 3 -   1784207 CCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22248599 3 + 158406734 CCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50484244 3 +  54856640 CCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       627681 3 -   2910086 CCT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40655626 3 +  42888418 CCT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113278868 3 + 116334831 CCT
i micMur3.chr9              C 0 I 12
s proCoq1.NW_012142813v1        23969 3 +     80520 CCT
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             641463 3 -  36342412 CCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81360124 3 + 145441459 CCT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54416742 3 +  91889043 CTT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1807214 3 +   3943991 CCT
i dasNov3.JH570731          I 497 C 0

a score=112375.000000
s hg38.chr15_KI270850v1_alt    345360 10 +    430880 GAGCAATTTT-
s panTro5.chr15              63498735 10 +  83230942 GAGCAATTTT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80455874 10 +  99763055 GAGCAATTTT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        56032 10 -   1709092 GAGCAATTTT-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17207841 10 - 121039945 GAGCAATTTT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60896359 10 + 169600520 GAGCAGTTTT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108423096 10 - 171882078 GAGCAGTTTT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        33550 10 -   2311642 GAGCAGTTTT-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        31721 10 -   1987038 GAGCAGTTTT-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21112259 10 -  24206276 GAGCAGTTTT-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        27433 10 -   1397330 GAGCAGTTTT-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        50750 10 -   1784207 GAGCAGTTTT-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22248602 10 + 158406734 GAGCAATTTC-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50484247 10 +  54856640 TAGCAATTTT-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       627684 10 -   2910086 GAGCAATTTT-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40655629 10 +  42888418 GAGCAATTTT-
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        23972  9 +     80520 -ATGAATTCT-
i proCoq1.NW_012142813v1    C 0 I 3
s otoGar3.GL873530             641466  9 -  36342412 -ATGAATTTT-
i otoGar3.GL873530          C 0 I 2
s mm10.chr7                  81360127  9 + 145441459 -ATTCATTTT-
i mm10.chr7                 C 0 I 3
s canFam3.chr3               54416745  9 +  91889043 -ATTCATTTT-
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1807217 10 +   3943991 -ATGCATTTTA
i dasNov3.JH570731          C 0 I 2
e micMur3.chr9              113278871 12 + 116334831 I

a score=1268465.000000
s hg38.chr15_KI270850v1_alt    345370 88 +    430880 GATTAGTTCTAGTTATACTATAATTT-AAACAAATGCTCCTTCTCTCCTCA-TTCAAC----TTTT----CCATATTGCC-----AG----TCTTTATAACCATTTA
s panTro5.chr15              63498745 88 +  83230942 GATTAGTTCTAGTTATACTATAATTT-AAACAAATGCTCCTTCTCTCCTCA-TTCAAC----TTTT----CCATATTGCC-----AG----TCTTTATAACCATTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80455884 88 +  99763055 GATTAGTTCTAGTTATACTATAATTT-AAACAAATGCTCCTTCTCTCCTCA-TTCAAC----TTTT----CCATATTGCC-----AG----TCTTTATAACCATTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        56042 88 -   1709092 GATTAGTTCTAGTTATACTATAATTT-AAACAAATGCTCCTTCTCTCCTCA-TTCAAC----TTTT----CCATATTGCC-----AG----TCTTTATAACCATTTA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17207851 91 - 121039945 GATTAGTTCTAGTTATACTATAATTT-AAACAAATGCTCCTTCTCTCCTCA-TTCAACA-ATTTTT----CCACATTGCC-----AG----TCTTTATAACCATTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60896369 91 + 169600520 GATTAGTTCTAGTTATACTATAATTT-AAACAAATTCTCCTTCTCTCCTCA-TTCAGCA-ATTTTT----CCATATTGCC-----AG----TCTTTATAGCCATTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108423106 91 - 171882078 GATTAGTTCTAGTTATACTATAATTT-AAACAAATTCTCCTTCTCTCCTCA-TTCAGCA-ATTTTT----CCATATTGCC-----AG----TCTTTATAGCCATTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        33560 91 -   2311642 GATTAGTTCTAGTTATACTATAATTT-AAACAAATTCTCCTTCTCTCCTCA-TTCAGCA-ATTTTT----CCATATTGCC-----AG----TCTTTATAGCCATTTA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        31731 91 -   1987038 GATTAGTTCTAGTTATACTATAATTT-AAACAAATTCTCCTTCTCTCCTCA-TTCAGCA-ATTTTT----CCATATTGCC-----AG----TCTTTATAGCCATTTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21112269 91 -  24206276 GATTAGTTTTAGTTATACTATAATTT-AAACAAATTCTCCTTCTCTCCTCA-TTCAACA-ATTTTT----CCATATTGCC-----AG----TCTTTATAGCCATTTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        27443 91 -   1397330 GATTAGTTCTAGTTATACTATAATTC-AAACAAATTCTCCTTCTCTCCTCA-TTCAGCA-ATTTTT----CCATATTGCC-----AG----TCTTTATAGCCATTTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        50760 91 -   1784207 GATTAGTTCTAGTTAGACTATAATTT-AAACAAATTCTCCTTCTCTCCTCA-TTCAACA-ATTTTT----CCATATTGCC-----AG----TCTTTATAGCCACTTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22248612 92 + 158406734 GATTAGCTGTAGTTATACTATAATTT-AAACAAATTCTCCTTTTCTCCTCA-TTCAACCTTTTTTT----CCGTATTTCC-----AG----TCTTTATAACCATTTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50484257 96 +  54856640 GGTTAGTTGTAGTTATACTATAATTT-AAACAAATTCTCCTTTTCTCCTCA-TTCAACCTTTTTTTTCCCCCATATTTCC-----GG----TCTTTATAACCATTTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       627694 92 -   2910086 GATTAGTTGTAGTTATACTATAATTT-AAACAAATTCTCCTTTTCTCCTCA-TTCAACCTTTTTTT----CCATATTTCC-----AG----TCTTTACAACCATTTA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40655639 87 +  42888418 GATTAGTTGTAGTTGTACTA-----T-AAACAAATTCTCCTTTTCTCCTCA-TTCAACCTTTTTTT----CCATATTTCC-----AA----TCTTTATAACCATTTA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113278883 89 + 116334831 GATTAGTTGTAGATACACTATAATTT-AAACAAACTATCC---TCTCCCCA-TTCACCATTTCTTT----TCATATTGCC-----AG----TCTTCAAAACTATTTT
i micMur3.chr9              I 12 C 0
s proCoq1.NW_012142813v1        23984 94 +     80520 GATTAGTTGTAGACATACTATAATTT-AAACAAATTGTCC---TCTCCCCA-TTCAACATTTTTTT----TCATATTGCCAGACAAG----TCTTCAAAACCATTTT
i proCoq1.NW_012142813v1    I 3 C 0
s otoGar3.GL873530             641477 90 -  36342412 GATTAGTTTTAATTATACCATAATTC-AAACAAATGCTCC---TCTCCTCA-TTCAACATTTTTTT---CCCATAATGCC-----AG----TCTTCATAACCATTTT
i otoGar3.GL873530          I 2 I 204
s mm10.chr7                  81360139 86 + 145441459 GATTAGTTATAG--ATAATATAATTA-AAGTAAACTCTGTCTCTCAACAAA----GACATTTTTTT----C----TTGCC-----AGAGAATTTTCATAACAATTT-
i mm10.chr7                 I 3 C 0
s canFam3.chr3               54416755 90 +  91889043 GATTAGTTGT-TCTATGCTATAATTT-AAACAAATACTTT---TCTCCCCA-ATTCAT--Tttttt----tcatattccc-----aggcagtcttcataatcatttt
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1807229 97 +   3943991 GATTAGTTGTACTTACACTATAATTTAAAACAAATTCTCCTTCCCTCCCCAATTCAATA-ATtttt----tcatattgcc-----agccagtcttcataaccattat
i dasNov3.JH570731          I 2 C 0

a score=1810191.000000
s hg38.chr15_KI270850v1_alt    345458 123 +    430880 AAATGCATTTATCATATTCTATTTAGGGAACAAGGTACATCTCACTGAC-----------------------------CCA---------TACTCTTCCT-GTTA--------TATATATACTTTCCAAGTTTTCAGAACCATAAATAAAAA---TTAAGATGTAGCTTCTTC
s panTro5.chr15              63498833 123 +  83230942 AAATGCATTTATCATATTCTATTTAGGGAACAAGGTGCATCTCACTGAC-----------------------------CCA---------TACTCTTCCT-GTTA--------TATATATACTTTCCAAGTTTTCAGAACCATAAATAAAAA---TTAAGATGTAGCTTCTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80455972 123 +  99763055 AAATGCATTTATCATATTCTATTTAGGGAACAAGGTGCATCTCACTGAC-----------------------------CCA---------TACTCTTCCT-GTTA--------TATATATACTTTCCAAGTTTTCAGAACCATAAATAAAAA---TTAAGATGTAGCTTCTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        56130 123 -   1709092 AAATGCATTTATCATATTCTATTTAGGGAACAAGGTACATCCCACTGAC-----------------------------CCA---------TACTCTTCCT-GTTA--------TATATATACTTTCCGAGTTTTCAGAACCATAAATAAAAA---TTAAGATGTAGCTTCTTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17207942 123 - 121039945 AAATGCATTTATCATATTCTATTTAGGGAACAAAGTACATCTCACTGAC-----------------------------CCA---------TACTCTTCCT-GTTA--------TATATATACTTTCCAAGTTTTCAGAACCATAAATAAAAA---TTAAGATGTAGCTTCTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60896460 123 + 169600520 AAATGCATTTATCATATTCTATTTAGGGAACAAGGTACATCTCACTGAC-----------------------------CCA---------TACTCTTCCT-GCTA--------CATATATACTTTCCAAGTTTTCAGAACCATAAACAAAAA---TTAAGATGTAGCTTCTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108423197 123 - 171882078 AAATGCATTTATCATATTCTATTTAGGGAACAAGGTACATCTCACTGAC-----------------------------CCA---------TACTCTTCCT-GCTA--------CATATATACTTTCCAAGTTTTCAGAACCATAAACAAAAA---TTAAGATGTAGCTTCTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        33651 123 -   2311642 AAATGCATTTATCATATTCTATTTAGGGAACAAGGTACATCTCACTGAC-----------------------------CCA---------TACTCTTCCT-GCTA--------CATATATACTTTCCAAGTTTTCAGAACCATAAACAAAAA---TTAAGATGTAGCTTCTTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        31822 123 -   1987038 AAATGCATTTATCATATTCTATTTAGGGAACAAGGTACATCTCACTGAC-----------------------------CCA---------TACTCTTCCT-GCTA--------CATATATACTTTCCAAGTTTTCAGAACCATAAACAAAAA---TTAAGATGTAGCTTCTTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21112360 123 -  24206276 AAATGCATTTATCATATTCTATTTAAGGAACAAGGTACATCTCACTGAC-----------------------------CCA---------TACTCTTCCT-GTTA--------CATATATACTTTCCAAGTTTTCAGAACCATAAACAAAAA---TTAAGATGTAGCTTCTTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        27534 123 -   1397330 AAATGCATTTATCATATTCTATTTAGGGAACAAGGTACATCTCACTGAC-----------------------------CCA---------TACTCTTCCT-GCTA--------CATATATACTTTCCAAGTTTTCAGAACCATAAACAAAAA---TTAAGATGTAGCTTCTTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        50851 123 -   1784207 AAATGCATTTATCATATTCTATTTAGGGAACAAGGTACATCTCACTGAC-----------------------------CCA---------TACTCTTCCT-GTTA--------CATATATACTTTCCAAGTTTTCAGAACCATAAACAAAAA---TTAAGATGTAGTTTCTTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22248704 123 + 158406734 AAATGCATTTATCATACTCTACTTAGGGAAAAAGGTACATCTCACTGAC-----------------------------CCA---------TACTCCTCCT-GTTA--------CATATATACTTTCCAAGTTTTCAGAACCATAAATAAAAA---TTAAGATGTACCTTCTTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50484353 152 +  54856640 AAATGCATTTATCATATTCTATTTAGGGAACAAGGTACATCTCACTGACCCATACTCCTCCTGTTACATATATACTTTCCA---------TACTCCTCCT-GTTA--------CATATATACTTTCCAAGTTTTCAGAACCAGAAATAAAAA---TTAAGATATACCTTCTTC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       627786 123 -   2910086 AAATGCATTTATCATATTCTATTTAGGGAACAAGGTACAGCTCACTGAC-----------------------------CCA---------TACTCCTCCT-GTTA--------CATATATACTTTCCAAGTTTTCAGAACCATAAATAAAAA---TTAAGATGCACCTTCTTA
i cebCap1.NW_016107610v1    C 0 I 290
s aotNan1.NW_018505940v1     40655726 123 +  42888418 AAATGCATTTATCATATTATATTTAGGGAACAAGGTACATCTCACTGAC-----------------------------CCA---------TACTCTTCCT-GTTA--------CATATATACTTTCCAACTTTTCAGAACCATAAATTAAAA---TTAAGATGTACCTTCTTC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113278972 127 + 116334831 AAATCTGCTTATCACACTCTGGTTAGGGAACAAGGTACATTTCACTGAC-----------------------------CCA---------TTCTCCTATT-ATCA-------TTTTTGATACTTTCCAAGTTTTCAGAATCATAAATAAAAATTTTTAAGATGTAGCTTCTTT
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        24078 127 +     80520 AAATCTATTTATCTTACTCTATTTAGGGAACAAGGTACATTTCATTGAC-----------------------------CCA---------TTCTCCTATTAAACA-------TTTTAGATACTTTCCAAGTTTACAGAATCATAAATAAAAA-TGTTAAGATGTAGCTTCTTT
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             641771 119 -  36342412 AAATGAATTTATTATGCTCTACTTAGGGAACAAGGT-CATTTCACTGAC-----------------------------CCA---------TTCTCCTATTAAACA--------TTTAGAAACTTCCCAAGTTTTCAGAATCATATA-------TTTTTAGATGTAGCTTCTTT
i otoGar3.GL873530          I 204 C 0
s mm10.chr7                  81360225 126 + 145441459 TGATAAAGTCATCACATTTTATTTAGGAGACCAGTTACATCCTAAGGAC-----------------------------CCAGTTACTTATTACTACTATT-GCTA---------ACAACTTCTTCCC----TCTGACACGCCTATGTTCTAT---TAGAAATGTATTTGGAC-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54416845 129 +  91889043 taattaatttatgataatctatttagggaacatgctacatttcgctaac-----------------------------cta---------ctcccctact-gttaaa----catttagacacgttccaagttttcaggattataaatacaaa-ctttaaggtataacttcttg
i canFam3.chr3              C 0 I 8
s dasNov3.JH570731            1807326 132 +   3943991 taataaatttatgatattatatttaggaaacaagctacctttt-ctgac-----------------------------cca---------ttcccctact-gttggaaagtatcttaaatactttccaagttttcaggattagaaaGTAAAA-TTTTAAGGCATAGTTTCTTT
i dasNov3.JH570731          C 0 C 0

a score=938499.000000
s hg38.chr15_KI270850v1_alt    345581 70 +    430880 ATATTTTGTG-TTTTCTTT--GGTCAGATTCCTAGAAAGCCGAATGCCAAAAATGCTATCT-ATGAGAGCTCTG
s panTro5.chr15              63498956 70 +  83230942 ATATTTTGTG-TTTTCTTT--GGTCAGATTCCTAGAAAGCTGAATGCCAAAAACGCTATCT-ATGAGAGCTCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80456095 70 +  99763055 ATATTTTGTG-TTTTCTTT--GGTCAGATTCCTAGAAAGCCGAATGCCAAAAATGCTATCT-ATGAGAGCTCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        56253 69 -   1709092 ATATTTTGTG-TTTTCTTT--GGTCAGATTCCTAGAAAGCCGAATGCC-AAAATGCTATCT-ATGAGAGCTCTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17208065 70 - 121039945 ATATTTTGTG-TTTTCTTT--GGTCAGATTCCTAGAAAGTTGAATGCCAAAAATGCTATCT-ATGAGAGCTCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60896583 70 + 169600520 ATATTTTTTG-TTTTCTTT--GGTCAGATTCCTAGAAAGTCGAATGCCAAAAATGCTATCT-ATAACAGCTCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108423320 70 - 171882078 ATATTTTTTG-TTTTCTTT--GGTCAGATTCCTAGAAAGTCGAATGCCAAAAATGCTATCT-ATAACAGCTCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        33774 70 -   2311642 ATATTTTTTG-TTTTCTTT--GGTCAGATTCCTAGAAAGTCGAATGCCAAAAATGCTATCT-ATAACAGCTCTG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        31945 70 -   1987038 ATATTTTTTG-TTTTCTTT--GGTCAGATTCCTAGAAAGTCGAATGCCAAAAATGCTATCT-ATAACAGCTCTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21112483 70 -  24206276 ATATTTTTTG-TTTTCTTT--GGTCAGATTCCTAGAAAGTCGAATGCCAAAAATGCTATCT-ATAACAGCTCTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        27657 70 -   1397330 GTATTTTTTG-TTTTCTTT--GGTCAGATTCCTAGACAGTCGAATGCCAAAAATGCTATCT-ATAACAGCTCTG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        50974 69 -   1784207 ATATTTTTTG-TTTTCTTT--GGTCAGATTCA-AAAAAGTCGAATGCCAAAAATGCTATCT-ATAACAGCTCTG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22248827 70 + 158406734 ATATTTTGTG-TTTTCATT--GGTCAGATTTCTAGAAGGGCAAATGCCACAAGTGCTATCT-ATGAGGGCTCTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50484505 70 +  54856640 ATATTTTGTG-TTTTAGTC--AGTCAGATTTCTAGAAAGTCAAATGCCAAAAGTGCTATCT-ATGAGGGCTCTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       628199 70 -   2910086 aTATTTTGTG-TTTTCTTT--GGTCAGATTTCTAGAAAGTCAAATGCCAAAAGTGCTATCT-ATGAGGGCTCTG
i cebCap1.NW_016107610v1    I 290 C 0
s aotNan1.NW_018505940v1     40655849 70 +  42888418 ATATTTTGTG-TTTTCTTT--GGTCAGATTTCTAGAAAGTCAAATGCCAAAAGTGCTATCT-ATGAGGGCTCTG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113279099 67 + 116334831 --ATATTTTG-TGTTCTTT--GGTCAGATTCCTAGA-AGTAGAATGCCAAAAATGCTTTCT-ATGAGGGCTCTG
i micMur3.chr9              C 0 I 704
s proCoq1.NW_012142813v1        24205 67 +     80520 --ATATTTTG-TTTTCTTT--GGTCAGATTCCTAGA-AGTAGAATGCCAAAAATGCTTTCT-ATGAGGGCTCTG
i proCoq1.NW_012142813v1    C 0 I 250
s otoGar3.GL873530             641890 68 -  36342412 --GTATTTTACTTTTCTTT--GGTCAGTTTCCTAGA-AGTAAAATGCCAAAAAAGCCTTCT-ATGAGGACTCTA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81360351 64 + 145441459 ATGTTACACT-TTATATTT--GTGTTAAAGCTTGAAATTCTGAGCGTCaaaa---ttatgt-attaaaatt---
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54416982 69 +  91889043 gtatggtggg-tttttttctaggttcaattcctaga-tataaaatGCCAACA-TGCTTTCT-ATGA-GGTTCTG
i canFam3.chr3              I 8 C 0
s dasNov3.JH570731            1807458 67 +   3943991 --ATATTTTG-TTTCCCTT--TATCAGATTCCTAGT-AGTAGTAtgccaaaa-tgttttctaaggagggctctg
i dasNov3.JH570731          C 0 C 0

a score=138018.000000
s hg38.chr15_KI270850v1_alt    345651 12 +    430880 CATTG-TATCATA
s panTro5.chr15              63499026 12 +  83230942 CATTG-TATCATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80456165 12 +  99763055 CATTG-TATCATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        56322 12 -   1709092 CATTG-TATCATA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17208135 12 - 121039945 CATTG-TATCATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60896653 12 + 169600520 CATTG-TATCATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108423390 12 - 171882078 CATTG-TATCATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        33844 12 -   2311642 CATTG-TATCATA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        32015 12 -   1987038 CATTG-TATCATA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21112553 12 -  24206276 CATTG-TATCATA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        27727 12 -   1397330 CATTG-TATCATA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        51043 12 -   1784207 TGTTG-TATCATA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22248897 12 + 158406734 TGTTA-TATCATA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50484575 12 +  54856640 TGTTA-TATCATC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       628269 12 -   2910086 TGTTA-TATCATA
i cebCap1.NW_016107610v1    C 0 I 11
s aotNan1.NW_018505940v1     40655919 12 +  42888418 TGTTA-TATCATA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             641958 12 -  36342412 TGTTC-TATCACA
i otoGar3.GL873530          C 0 I 2
s mm10.chr7                  81360415 13 + 145441459 tattgatagaata
i mm10.chr7                 C 0 I 5
s canFam3.chr3               54417051 12 +  91889043 CTTTC-TATCAGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1807525 12 +   3943991 tgttc-tatcaga
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113279166 704 + 116334831 I
e proCoq1.NW_012142813v1        24272 250 +     80520 I

a score=983933.000000
s hg38.chr15_KI270850v1_alt    345663 115 +    430880 AATGTATCAGAA---------CACCATAAGC-TGTGTCAAACCTTT--AAATTCT---AATTTACGTGTGTGAAA-TGAT-----ACATTAT-----------CAAAATAACTCGTTGA----------------------CAGAATATTTTA---------------------------------------------------------------------------------------------------------AAATCCCCAAATATTA
s panTro5.chr15              63499038 115 +  83230942 AATGTATCAGAA---------CACCATAAGC-TGTGTCAAACCTTT--AAATTCT---AATTTACGTGTGTGAAA-TGAT-----ACATTAT-----------CAAAATAACTCGTTGA----------------------CAGAATATTTTA---------------------------------------------------------------------------------------------------------AAATCCCCAAATATTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80456177 115 +  99763055 AATGTATCAGAA---------CACCATAAGC-TGTGTCAAACCTTT--AAATTCT---AATTTACGTGTGTGAAA-TGAT-----ACATTAT-----------CAAAATAACTCGTTGA----------------------CAGAATATTTTA---------------------------------------------------------------------------------------------------------AAATCCCCAAATATTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        56334 115 -   1709092 AATGTATCAGAA---------CACCATAAGC-TGTGTCAAACCTTT--AAATTCT---AATTTACGTGTGTGAAA-TGAT-----ACATTAT-----------CAAAATAACTCGCTGA----------------------CAGAATATTTTA---------------------------------------------------------------------------------------------------------AAATCCCCAAATATTA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17208147 115 - 121039945 AATGTATCAGAA---------CACCATAAGC-TGTGTCAAACCTTT--AAATTCT---AATGTACGTTTGTGAAA-TGAA-----ACATTAT-----------CAAAATAACTCATTGA----------------------CAGAATATTTTA---------------------------------------------------------------------------------------------------------AAATCCCCAAATATTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60896665 118 + 169600520 AATGTATCAGAA---------CACTATAAGC-TGTGTCAAACCTTT--AAATTCT---AATTTACATGTGTGAAA-TGAT--ACCACATTAT-----------CAGAATAACTCATTGA----------------------CAGAATATTTTA---------------------------------------------------------------------------------------------------------AAATCCCCAAATATTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108423402 118 - 171882078 AATGTATCAGAA---------CACTATAAGC-TGTGTCAAACCTTT--AAATTCT---AATTTACATGTGTGAAA-TGAT--ACCACATTAT-----------CAGAATAACTCATTGA----------------------CAGAATATTTTA---------------------------------------------------------------------------------------------------------AAATCCCCAAATATTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        33856 118 -   2311642 AATGTATCAGAA---------CACTATAAGC-TGTGTCAAACCTTT--AAATTCT---AATTTACATGTGTGAAA-TGAT--ACCACATTAT-----------CAGAATAACTCATTGA----------------------CAGAATATTTTA---------------------------------------------------------------------------------------------------------AAATCCCCAAATATTA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        32027 118 -   1987038 AATGTATCAGAA---------CACTATAAGC-TGTGTCAAACCTTT--AAATTCT---AATTTACATGTGTGAAA-TGAT--ACCACATTAT-----------CAGAATAACTCGTTGA----------------------CAGAATATTTTA---------------------------------------------------------------------------------------------------------AAATCCCCAAATATTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21112565 118 -  24206276 AATGTATCAGAA---------CACTATAAGC-TGTGTCAAACCTTT--AAATTCT---AATTTACATGTGTGAAA-TGAT--ACCACATTAT-----------CAGAATAACTCGTTGA----------------------CAGAATATTTTA---------------------------------------------------------------------------------------------------------AAATCCCCAAATATTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        27739 118 -   1397330 AATGTATCAGAA---------CACTATAAGC-TGTGTCAAACCTTT--AAATTCT---AATTTACATGTGTGAAA-TGAT--ACCACATTAT-----------CAGAATAACTCGTTGA----------------------CAGAATATTTTA---------------------------------------------------------------------------------------------------------AAATCCCCAAATATTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        51055 117 -   1784207 AATGTATCAGAA---------CACTATAAGC-TGTGTCAAACCTTT--AAATTCT----ATTTACATGTGTGAAA-TGAT--ACCACATTAT-----------CAGAATAACTCATTGA----------------------CAGAACATTTTA---------------------------------------------------------------------------------------------------------AAATCCCCAAATATTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22248909 118 + 158406734 AATGTATCAGAA---------TACTATAAGCTTGTGTCAAAGCTTTAAAAATGCT---AATTTACATGTGTGAAA-TGAT-----ACATTAT-----------CAAAATAACTCATTGA----------------------CAGAATATTTTT---------------------------------------------------------------------------------------------------------AAACCCCCAAATATTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50484587 118 +  54856640 AATGTATGAGAA---------TACTATACACTTGTGTCAAAGCTTTCAAAATTCT---AATTTACATGTGTGAAA-TGAT-----ACATTAT-----------CAAAATAACTCGTTGA----------------------CAGAATATTTTT---------------------------------------------------------------------------------------------------------AAATCCCCAAATATTA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40655931 118 +  42888418 AATGTATCAGAA---------TACTATAAGCTTGTGTCAAAGTTTTAAAAACTCT---AATTTACATGTGTGAAA-TGAT-----ACATTAT-----------CAAAATAACTCACTGA----------------------CAGAATATTTTA---------------------------------------------------------------------------------------------------------AAATCCCCAAATATTA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             641972 217 -  36342412 ATTATATGAGAACTGGAGTTTCACTACAAGATTGAGTCAAGACTTT--AAATTCT---AATTTAAGTGGGTAAAA-TGAT--AGTGCATTATATCAAAAACCCAAAAATAACTAGTTGA----------------------CAGAATATTTTATGTCATTTCAAGTACTA-------CCTGTACGTCC------------------TCTTCCCCAGTTAACCCTTAAGGTGGAGGGATCATAGAAAGTTCTATAAACGAAACCCCCAAATAG--
i otoGar3.GL873530          I 2 C 0
s mm10.chr7                  81360433  94 + 145441459 --tata----aa---------taaaaaaaGC-TGTTTCATTTCTTT-----TTCT---GTGTTAGCTTTGT---------------CTCCTT-----------CCAACTTAATCCTTAG----------------------ATGTGTATCTGA---------------------------------------------------------------------------------------------------------GAGAGCT---GTATTT
i mm10.chr7                 I 5 C 0
s canFam3.chr3               54417063 103 +  91889043 AATGTATGAGAGTGTGGGTTTTATTATAAGCTTATGTCAAAGTACT--AAATTTT---ACTTAAGTAGATAAAAA-TGAT-----ACATTAT-----------CAAAA--------------------------------------------A---------------------------------------------------------------------------------------------------------AAGACCCCACAAACTA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1807537 234 +   3943991 aatatatgagaacataaatttcactacaagcttgtatcaaggcttt--aaattctgctaatttaagtgggcaaaactgatttatcccattat-----------aaaaaaaatctaattattttaaataatttCTGTAAGTTCTGACTATTTCGTCTTCTTTCTGTCCTTATTCCTTCCCCATTTATCCTTTTGGGTGTGAGTGAGGATTATCTGAGAAAGATCTTTAAACA---------------------------AAATCCCAAAATATTA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113279166 704 + 116334831 I
e proCoq1.NW_012142813v1        24272 250 +     80520 I
e cebCap1.NW_016107610v1       628281  11 -   2910086 I

a score=180739.000000
s hg38.chr15_KI270850v1_alt    345778 14 +    430880 ATCAGTCATGAGAT
s panTro5.chr15              63499153 14 +  83230942 ATCAGTCATGAGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80456292 14 +  99763055 ATCAGTCATGAGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        56449 14 -   1709092 ATCAGTCATGAGAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17208262 14 - 121039945 ATCAGTCATGAGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60896783 14 + 169600520 ATCAGTCATGAGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108423520 14 - 171882078 ATCAGTCATGAGAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        33974 14 -   2311642 ATCAGTCATGAGAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        32145 14 -   1987038 ATCAGTCATGAGAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21112683 14 -  24206276 ATCAGTCATGAGAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        27857 14 -   1397330 ATCAGTCATGAGAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        51172 14 -   1784207 ATCAGTCATGAGAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22249027 14 + 158406734 ATCAGTCATGAGAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50484705 14 +  54856640 ATCAGTCATGAGAT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40656049 14 +  42888418 ATCCGTCATGAGAT
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        24522 14 +     80520 ATCAGTCATGAGGT
i proCoq1.NW_012142813v1    I 250 C 0
s otoGar3.GL873530             642189 12 -  36342412 --CAGGAATGAGGT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81360527 14 + 145441459 GTCAGGCATGAGGT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54417166 14 +  91889043 ATTACTCAGAATAT
i canFam3.chr3              C 0 I 562
s dasNov3.JH570731            1807771 12 +   3943991 TTTAAT--TGAGGC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113279166 704 + 116334831 I
e cebCap1.NW_016107610v1       628281 11 -   2910086 I

a score=91170.000000
s hg38.chr15_KI270850v1_alt    345792 6 +    430880 AAATTT
s panTro5.chr15              63499167 6 +  83230942 AAATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80456306 6 +  99763055 AAATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        56463 6 -   1709092 AAATTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17208276 6 - 121039945 AAATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60896797 6 + 169600520 AAATTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108423534 6 - 171882078 AAATTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        33988 6 -   2311642 AAATTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        32159 6 -   1987038 AAATTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21112697 6 -  24206276 AAATTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        27871 6 -   1397330 AAATTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        51186 6 -   1784207 AAATTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22249041 6 + 158406734 AAATTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50484719 6 +  54856640 AAATTT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40656063 6 +  42888418 AAATTT
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        24536 6 +     80520 AAATTT
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             642201 6 -  36342412 AAATTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81360541 6 + 145441459 AAATTC
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1807783 6 +   3943991 AAATTT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113279166 704 + 116334831 I
e canFam3.chr3               54417180 562 +  91889043 I
e cebCap1.NW_016107610v1       628281 11 -   2910086 I

a score=2943358.000000
s hg38.chr15_KI270850v1_alt    345798 264 +    430880 CCAAGACTGAGTCCAATCT--AA-GTAATATAGACAGAACTACCAGCACTgtatctgaccccattttaca-gaagaggtaactgc-agcccagagaagcaaagagacccgcATGTGACTGCCCTTTTAGAAATGCAGCCTTAACAGATAAAACCAATG----GTCAGTGAG------AACAC----CATCGCCAACTTCCATATTCTAGGACAGGCTGACAGGCG-----------------------------------------------ATCACA--ACCAAAGTTGCCAGTCCTGGGTATGGG-----GAAGAGAAGAAGGTGGTAAAATAAG
s panTro5.chr15              63499173 264 +  83230942 CCAAGACTGAGTCCAATCT--AA-GTAATATAGACAGAACTACCAGCACTgtatctgaccccattttaca-gaagaggtaactgc-agcccagagaagcaaagagacccgcATGTGACTGCCCTTTTAGAAATGCAGCCTTAACAGATAAAACCAATG----GTCAGTGAG------AACAC----CATCGCCAACTTCCATATTCTAGGACAGGCTGACAGGCG-----------------------------------------------ATCACA--ACCAAAGTTGCCAGTCCTGGGTATGGG-----GAAGAGAAGAAGGTGGTAAAATAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80456312 264 +  99763055 CCAAGACTGAGTCCAATCT--AA-GTAATATAGACAGAACTACCAGCACTGTATCTGAccccattttaca-gaagaggtaactgc-agcccagagaagcaaagagacccgcATGTGACTGCCCTTTTAGAAATGCAGCCTTAACAGATAAAACCAATG----GTCAGTGAG------AACAC----CATCGCCAACTTCCATATTCTAGGACAGGCTGACAGGCG-----------------------------------------------ATCACA--ACCAAAGTTGCCAGTCCTGGGTATGGG-----GAAGAGAAGAAGGTGGTAAAATAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        56469 264 -   1709092 CCAAGACTGAGTCCAATCT--AA-GTAATATAGACAGAACTACCAGCACTGTATCTGAccccattttaca-gaagaggtaactgc-agcccagagaagcaaagagacccgcATGTGACTGCCCTTTTAGAAATGCAGCCTTAACAGATAAAACCAATG----GTCAGTGAG------AACAC----CATCGCCAACTTCCATATTCTAGGACAGGCTGACAGGCG-----------------------------------------------ATCACA--ACCAAAGTTGCCAGTCCTGGGTATGGG-----GAAGAGAAGAAGGTGGTAAAATAAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17208282 264 - 121039945 CCAAGACTGAGTCCAGTCT--AA-GTAATATAGACAGAACTACCAGCACCGTATCTGAccccattttaca-gaagaggtaactgc-agcccagagaagcaaagagacccgcATGTGACTGCCCTTTTAGAAATGCAGCCTTAACAGATAAAACCAATG----GGCAGTGAG------AACAC----CATCGCCAACTTCCATATTCTAGGACAGGCTGACAGGCG-----------------------------------------------ATCACA--ACCAAAGTTGCCAGTCCTGGGTATGGG-----GAAGAGAAGAAGGTGGTAAAATAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60896803 254 + 169600520 TCAAGACTGAGTCCAATCT--AA-GTAACAT----AGAACTACCAGCACTGTATCTGAccccattttaca-gaagaggtaactgc-agcccggagaagcaaagagacccgcATGTGATTGTCCTTTTAGAAAAGCAGCCTTAACAGATAAAACCAATG----GGCAGCAAG------AACA----------CCAACTTCCACATTCTAGGACAGGCTGACAGGCG-----------------------------------------------ATCACA--ACCAATGCTGCCAGTCCTGGGTATGGG-----GAAGAGAAGAAGGTGGGAAAATAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108423540 254 - 171882078 TCAAGACTGAGTCCAATCT--AA-GTAACAT----AGAACTATCAGCACTgtatctgaccccattttaca-gaagaggtaactgc-agcccggagaagcaaagagacccgcATGTGATTGTCCTTTTAGAAAGGCAGCCTTAACAGATAAAACCAATG----GGCAGCGAG------AACA----------CCAACTTCCACATTCTAGGACAGGCTGACAGGCG-----------------------------------------------ATCACA--ACCAATGCTGCCAGTCCTGGGTATGGG-----GAAGAGAAGAAGGTGGGAAAATAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        33994 254 -   2311642 TCAAGACTGAGTCCAATCT--AA-GTAACAT----AGAACTACCAGCACTgtatctgaccccattttaca-gaagaggtaactgc-agcccggagaagcaaagagacccgcATGTGATTGTCCTTTTAGAAAAGCAGCCTTAACAGATAAAACCAATG----GGCAGCGAG------AACA----------CCAACTTCCACATTCTAGGACAGGCTGACAGGCG-----------------------------------------------ATCACA--ACCAATGCTGCCAGTCCTGGGTATGGG-----GAAGAGAAGAAGGTGGGAAAATAAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        32165 254 -   1987038 TCAAGACTGAGTCCAATCT--AA-GTAACAT----AGAACTACCAGCACTgtatctgaccccattttaca-gaagaggtaactgc-agcccggagaagcaaagagacccgcATGTGACTGTCCTTTTAGAAAAGCAGCCTTAACAGATAAAACCAATG----GGCAGCAAG------AACA----------CCAACTTCCACATTCTAGGACAGGCTGACAGGCG-----------------------------------------------ATCACA--ACCAATGCTGCCAGTCCTGGGTATGGG-----GAAGAGAAGAAGGTGGGAAAATAAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21112703 254 -  24206276 TCAAGACTGAGTCCAATCT--AA-GTAACAT----AGAACTACCAGCACTGTATCTGAccccattttaca-gaagaggtaactgc-agcccagagaagcaaagagacccgcATGTGACTGTCCTTTTAGAAAAGCAGCCTTAACAGATAAAACCAATG----GGCAGCGAG------AACA----------CCAACTTCCACATTCTAGGACAGGCTGACAGGCG-----------------------------------------------ATCACA--ACCAATGCTGCCAGTCCTGGGTATGGG-----GAAGAGAAGAAGGTGGGAAAATAAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        27877 251 -   1397330 TCAAGACTGAGTCCAATCT--AA-GTAACAT----AGAACTACCAGCACTgtatctgaccccattttaca-gaagaggtaactgc-agcccggagaagcaaagagacccgcATGTGACTGTCCTTTTAGAAAAGCAGCCTTAACAGATAAAACCAATG----GGCAGCGAG------AACA----------CCAACTTCCACATTCTAGGACAGGCTGACAGGCG-----------------------------------------------ATCACA--ACCAATGCTGCCAGTCCTGGGTATGGG-----GAAG---AGAAGGTGGGAAAATAAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        51192 260 -   1784207 TCAAGACTGGGTCCAATCT--AA-GTAACAT----AGAACTACCAGCACTgtatctgaccccattttaca-gaagaggtaactgc-agcccagagaagcaaagagacCCACGTGTGACTGTCCTTTTAGAAAAGCAGCCTTAACAGATAAAACCAATG----GGCAGCGAGAACACCAACA----------CCAACTTCCACATTCTAGGACAGGCTGACAGGCG-----------------------------------------------ATCACA--ACCAATGCTGCCAGTCCTGGGTATGGG-----GAAGAGAAGAAGGTGGGAAAATAAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22249047 262 + 158406734 CCAAGACTGAGTCCAATCT--AA-GTAACAC----AGACCT-CCAGCACTGTATCTGAccccattttaca-gaggaggtaactgc-agcccagagaagcaaagggacctgcTTGTGACTGCCCTTTTAGAAATGCAGCCCAAACAGATAAAACCAGTGGGCAGGCAGTGAG------AACAC----CAACGCCAACTTCCATGTTGTAGGACAGGCTGAAAGGCA-----------------------------------------------ATCACA--ACCAATGTTGCCAGTCCTGGGTAT-GG-----GAAGAGAAGAGAGTGAGAAAATAAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50484725 262 +  54856640 CCAAAACTGAGTCCAATCT--AA-GTAACAC----AGACCT-CCAGCACTGTATCTGAccccattttaca-gaaaaggtaactgc-agcccagagaagcaaagggacCCACTTGTGACTGCCCTTTTAGAAATGCAGCCCAAACAGATAAAACCAGTGGGCAGGCAGTGAG------AACAC----CAATGCCAACTTCCATATTCTAGGACAGGCTGACAGGCA-----------------------------------------------ATCACA--ACCAGTGTTGCCAGTCCTGGGTAT-GG-----GAAGAGAAGAGAGTGAGAAAATAAG
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40656069 262 +  42888418 CCAAGACTGAGTCCAATCT--AA-GTAACAC----AGACCT-CCAGCACTgtatctgaccccattttaca-gaagaggtaactgc-agcccagagaagcaaagggacctgcTTGTGACTGCCCTTTTAGAAATGCAGCCCAAACAGATAAAACCAGTGGGCAGGCAGTGAG------AATAC----CAACGCCAACTTCCATATTCTAGGACAGGCTGACAGGCA-----------------------------------------------ATCACA--ACCAATGTTGCCAGTCCTGGGTAT-GG-----GAAGAGAAGAGAGTGAGAAAATAAG
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        24542 263 +     80520 CCAAGATTGAGTCCCATCT--AAAGTAACATTAACATAACTAGAAGCACCATACCTGACACTattttatagggggagtaaactgt-agcccagagaaataaagggacctgcttaTGACTGCCATTCTAGAAACACACCCTAAGCAGATAAAACCAGTG----TGCAGTGGG------AAC-C----CAATGCCAGCTTCCACATTCTAGGACAAGCTCATAGGAG-----------------------------------------------ACCATG--ACCCATGTTGCCAGTCCTTGGTGT--G-----GAAGAGAAGACGGTGGGAAAATAAG
i proCoq1.NW_012142813v1    C 0 I 74
s otoGar3.GL873530             642207 262 -  36342412 CCAAGACTTAGTCTCATCT--AACGTAACATAAACAGAACTATAAGCACCATATCTGATGCcatgttaca-gaagagtaaactgt-agcccagagaagtaaaggggcctgc-TATGACTACCATTCTAGACATACATCCTAAACAAATAAAACCAATG----TGCAGTGGG------AACAC----TAATGCTAGCTCCTGTCTTCTCGGACAAGTTCACAGGAG-----------------------------------------------ACCATG--ACCCAGGCTGCCAGTCACTGGTGT--G-----AAAGGAAAGAGGGTGGGGAAAAAAA
i otoGar3.GL873530          C 0 I 1
s mm10.chr7                  81360547 262 + 145441459 CCAAGA-TGAGTTCTATGT--AA-GTAATGA----AATGGAGCAAGTACCTTG--TGAACTTA--TCACA-CAGGGTGTAACCTCAAGTCCAGAGAAGTAAAGGG-CATGATTGTAGCTGTCATTTTAGAAAC-TAGTCTGGACAAGGTAAATGTGTG----GGCAACAGG------GACACTAATTAATGCCAGTGTTCAAAGTCCAGGATGG--TGGAAGCTG-----------------------------------------------ACCACAGGGTGGGTTCTGAAAGTCATGAATGGGTGACCTCGAAGGTAAGATGA-GGAGAAATGAG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54417742 289 +  91889043 ccaggcatgccCCCATCTG--AA-TTAACATAAGCAGAACCCCAAGCA-----tccaaccctattttata-ggggagtaaactac-agtccagagaatcaaaaggacctgcTTGTTATTACCCATCTGGAAACATAGCCT-AACAGATAAAACCAACA----AGCAGTGGG------AACAC---------CTAGCTTTCATATTCTAGGACAGGCTGACAGGAGACA----GACAGACCCTAAAAGTTCACGCTCTGGATAGTAAAC--TAACCACA--TCCAAAGGTACCAGTCCTGGATAT--A-----GAAGAGAAAAGGGCAAGAAAAG---
i canFam3.chr3              I 562 C 0
s dasNov3.JH570731            1807789 306 +   3943991 CCAAGACTGAACTCCACCCTAAA-GTAACAC--ACAGAAttagaagcacctcatctgaccccattttaaa-g-ggagtaaactgt-agcccagagaagaaaagggatctgcTTGCATTTACCTTTTTGGAAATAC--CCTGAACAGACAAACCCAATG----GGCAGTGGG------AAGAG----CAATGCCAGCTTTCCTGTTCTAGGATCTGCTGACAGGAGCCAACAGGGTGGGCTCTAAAAGATTATGCTATGGATGGGAAACAGTAACCACA--ACCACTACTTCCAGTCCT--GTATAAG-----GAACAGAAGAGTGTGGGGAAACAAG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113279166 704 + 116334831 I
e cebCap1.NW_016107610v1       628281  11 -   2910086 I

a score=588402.000000
s hg38.chr15_KI270850v1_alt    346062 65 +    430880 TAATTCTATTCACTGC-ACATTCAGCTCG-GGAGATTTGG-CAAC-AAAAA-----------------TGCTTATAAGGCATCTGA
s panTro5.chr15              63499437 65 +  83230942 TAATTCTATTCACTGC-ACATTCAGCTCG-GGAGATTTGG-CCAC-AAAAA-----------------TGCTTATAAAGCATCTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80456576 65 +  99763055 TAATTCTATTCACTGC-ACATTCAGCTCG-GGAGATTTGG-CCAC-AAAAA-----------------TGCTTATAAAGCATCTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        56733 65 -   1709092 TAATTCTATTCACTGC-ACATTCAGCTCG-GGAGATTTGG-CAAC-AAAAA-----------------TGCTTATAAGGCATCTGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17208546 65 - 121039945 CCATTCTATTCACTGC-ACATTCAGCTTG-GGAGATTTGG-CAAC-AAAAA-----------------TGCTTATAAGGCATCTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60897057 74 + 169600520 CCATTCTATTCACTGC-ACATTCAGCTCG-GGAGATTTGG---aa-aaaaaaaaaaaaaaaaa------GCTTATAAGGCATCTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108423794 77 - 171882078 CCATTCTATTCACTGC-ACATTCAGCTCG-GGAGATTTGG-C-aa-aaaaaaaaaaaaaaaaaa----TGCTTATAAGGCATCTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        34248 78 -   2311642 CCATTCTATTCACTGC-ACATTCAGCTCG-GGAGATTTGG-Caaa-aaaaaaaaaaaaaaaaaa----TGCTTATAAGGCATCTGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        32419 78 -   1987038 CCATTCTATTCACTGC-ACAGTCAGCTCG-GGAGATTTGG-Caaa-aaaaaaaaaaaaaaaaaa----TGCTTATAAGGCATCTGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21112957 83 -  24206276 CCATTCTATTCACTGC-ACATTCAGCTCG-GGAGATTCGGACaaa-aaaaaaaaaaaaaaaaaaaaaCCGCTTATAAGGCATCTGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        28128 75 -   1397330 CCATTCTATTCACTGC-ACAGTCAGCTCG-GGAGATTTGG-Caaa-aaaaaaaaaaaaaaa-------TGCTTATAAGGCATCTGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        51452 81 -   1784207 CCATTCTATTCACTGC-ACATTCAGCTTG-GGAGATTTGG-Caaa-aaaaaaaaaaaaaaaaaaaaa-TGCTTATAAGGCATCTGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22249309 66 + 158406734 CCATTCTATTCACTGC-ACATTCAGCTCA-GGGTATGTGG-CAACAAAAAA-----------------TGCTTACGAGGCATCTGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50484987 65 +  54856640 CCATTCTATTCACTGC-ACATTCAGCTCA-GGGCATGTGG-CAAC-AAAAA-----------------CGCTTACAAGGCATCTGA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40656331 65 +  42888418 CCATTCTATTCACTGC-ACATTCAGTTCA-GGGTATGTGG-CAAC-AAAAA-----------------TGCTTACAAGGCATCTGA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             642470 70 -  36342412 CCATTCTACTCACTGA-ACACTCAGCTCA-GAGGATTTGG-GAAT-AGAGAAGCAA------------GGCTCAGAAGACACCTGA
i otoGar3.GL873530          I 1 C 0
s mm10.chr7                  81360809 71 + 145441459 CCCTCCTGTTCAATTCAACATTTAGCTCA-CGGCATTTAG-TAAC-TGAAAAGCAA------------AGTTGAGGTGTTATCTTA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54418031 68 +  91889043 CCATCCTATTCACTGA-ATGGTCACCGGACAGGGGTTTGG-CAGG-GGAGAAA---------------GGCTCAGAAGGCACCTGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1808095 44 +   3943991 CCATTCTATTCGTTA--ACATTCAGCTTA-GG--ATCTGA-CAGT-AGAGA-----------------------------------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113279166 704 + 116334831 I
e proCoq1.NW_012142813v1        24805 74 +     80520 I
e cebCap1.NW_016107610v1       628281 11 -   2910086 I

a score=1087175.000000
s hg38.chr15_KI270850v1_alt    346127 100 +    430880 AACTGTATTCTTATTTTGGGGTAATTTCTCACTGCC------------AATCCCACCTGTATTTACTTCTACTATCCCCTATCTATATTATCTGTACTAATCTATCTATAAT
s panTro5.chr15              63499502 100 +  83230942 AACTGTATTCTTATTTTGGGGTAATTTCTCACTGCC------------AATCCCACCTGtatttacttctactatctcctatctatattatctgtactaatctatctataat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80456641 100 +  99763055 AACTGTATTCTTATTTTGGGGTAATTTCTCACTGCC------------AATCCCACCTGtatttacttctactatctcctatctatattatctgtactaatctatctataat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        56798 100 -   1709092 AACTGTATTCCTATTTTGGGGTAATTTCTCACTGCC------------AATCCCACCTGTATTTACTTCTACTATCCCCTATCTATATTATCTGTACTACTCTATCTATAAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17208611 100 - 121039945 AACTGTATTCTTATTTTGGGGTAATTTCTCACTGCC------------AATCCCATCTGTATTTACTTCTACTATCCCCTATCTATATTATCTGTACTACTCTATCTATAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60897131 100 + 169600520 AACTGTATTCTTATTTTGGGGTAATTTCTTACTGCT------------AATCCCACCTGTATTTACTTCTACTATTCCCTATCTATATTATCTGTACTACTCTATCTATAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108423871 100 - 171882078 AACTGTATTCTTATTTTGGGGTAATTTCTTACTGCT------------AATCCCACCTGTATTTACTTCTACTATTCCCTATCTATATTATCTGTACTACTCTATCTATAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        34326 100 -   2311642 AACTGTATTCTTATTTTGGGGTAATTTCTTACTGCT------------AATCCCACCTGTATTTACTTCTACTATTCCCTATCTATATTATCTGTACTACTCTCTCTATAAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        32497 100 -   1987038 AACTGTATTCTTATTTTGGGGTAATTTCTTACTGCT------------AATCCCACCTGTATTTACTTCTACTATCCCCTATCTATATTATCTGTACTACTCTATCTATAAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21113040 100 -  24206276 AACTGTATTCTTATTTTGGGGTAATTTCTTACTGTT------------AATCCCACCTGTATGTACTTCTTCTATCCCCTATCTATATTATCTGTACTACTCTATCTATAAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        28203 100 -   1397330 AACTGTATTCTTATTTTGGGGTAATTTCTTACTGCT------------AATCCCACCTGTATTTACTTCTACTATCCCCTATCTATATTATGTGTACTACTCTATTTATAAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        51533 100 -   1784207 AACTGTATTCTTATTTTGGGGTAATTTCTTACTGCT------------AATCCCACCTGTATTTACTTCTACTATCCCCTATCTATATTATCTGTACTACTCTATCTATAAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22249375 100 + 158406734 AACTGTATTCTTATTTTGGGGTAATTTCTCACTGCC------------AATCCCACCTGTATTTACTTCTACTATCCCCTATCTATATTATCTGTACTACTCCATTTATAAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50485052 100 +  54856640 AACTATATTCTTATTTTGGGGTAATTTCTCACTGCC------------AATCCCACCTGTATTTACTTTTACTATCCCCTATCTATATAATCTGTACTACTCCATCTATAAT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40656396 100 +  42888418 AACTGTATTCTTATTTTGGGGTAATTTCTCACTGCC------------AATCCCATCTGTATTTACTTCTACTATCCCCTATCTATATTATCTGTACTACTCCATCTATAAT
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        24879 100 +     80520 AACTGTATTTTTATTTTCAGATAATTTCTTACTACC------------AATCCCACATACATTTACTTCTACTATCCCCTGTGTGtattatctgtactattctatctatact
i proCoq1.NW_012142813v1    I 74 I 1
s otoGar3.GL873530             642540  63 -  36342412 ------AATTATATTTTTAGATAATTTCTCACTGCC------------TATCCCACA-------------------------------GGTTTGTTCTATTCTTTCTATGCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81360880 108 + 145441459 AACTG-AATCTTATTTCAGGAAATTGTCTCATTGCCTCTTTCCCTTCAAGACACGCACGTAATTACTTTTAC---CCTCCAGCTATACTGTCTATGCTAGCCTATATATGTT
i mm10.chr7                 C 0 I 9
s canFam3.chr3               54418099  67 +  91889043 AATTGTATT-TTATTTTATGATAATTTCTCATAGTC------------ATTCCCA--TGTATTTACTTCCACAGTCTCCTAT------------------------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1808139  43 +   3943991 AACCAGGTTCAGA-----AGGTACTTGGATATTGCT-------------------------------TCTACTACCCCT---------------------------------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113279166 704 + 116334831 I
e cebCap1.NW_016107610v1       628281  11 -   2910086 I

a score=1812955.000000
s hg38.chr15_KI270850v1_alt    346227 135 +    430880 ATCCCC--TACCTATTCTAATTCATTTGC---CAACTCCAC-TTAGCATGAAGACCACACGCATCATACATGGCTGTAGATAAGGAACGTGAAATGCAAAAATTAAC--TGAGGCAATGTTTCATAGATTCATCATGGCATGA
s panTro5.chr15              63499602 135 +  83230942 atcccc--tacctaTTCTAATTCATTTGC---CAACTCCAC-TTAGCATGAAGACCACACGCATCATACATGGCTGTAGATAAGGAACGTGAAATGCAAAAATTAAC--TGAGGCAACGTTTCATAGATTCATCATGGCATGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80456741 135 +  99763055 atcccc--tacctaTTCTAATTCATTTGC---CAACTCCAC-TTAGCATGAAGACCACACGCATCATACATGGCTGTAGATAAGGAACGTGAAATGCAAAAATTAAC--TGAGGCAACGTTTCATAGATTCATCATGGCATGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        56898 134 -   1709092 ATCCCC--TACCTATTCTAATTCATTTGC---CAACTCCAC-TTAGCATGAAGACCACA-GCATAATACATGGCTGTACATAAGGAACGTGAAATGCAAAAATTAAC--TGAGGCAATGTTTCATAGATTCATCATGGCATGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17208711 135 - 121039945 ATCCCC--TACCTATTCTAATTCATTTGC---CAACTCCAC-TTAGCATGAAGACCACACGCATCATACATGGCTGTAGATAAGGAACGTGAAATGCAAAAATTAAC--TGAGGCAATGTTTCATAGATTCATCATGGCATGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60897231 135 + 169600520 ATCCCC--TACCTATTCTAATTCATTTGC---CAACTCCAG-TTAGCATGAAGACCACACACATCATACATGGCTGTAGATAAGGAACGTGAAATGCAAAAATTAAC--TGAGGCAATGTTTCATAGATTCATCATGGTGTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108423971 135 - 171882078 ATCCCC--TACCTATTCTAATTCATTTGC---CAACTCCAG-TTAGCATGAAGACCACACACATCATACATGGCTGTAGATAAGGAACGTGAAATGCAGAAATTAAC--TGAGGCAATGTTTCATAGATTCATCATGGTGTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        34426 135 -   2311642 ATCCCC--TACCTATTCTAATTCATTTGC---CAACTCCAG-TTAGCATGAAGACCACACACATCATACATGGCTGTAGATAAGGAATGTGAAATGCAAAAATTAAC--TGAGGCAATGTTTCATAGATTCATCATGGTGTGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        32597 135 -   1987038 ATCCCC--TACCTATTCTAATTCATTTGC---CAACTCCAC-TTAGCATGAAGACTACACACATCATACATGGCTGTAGATAAGGAACATGAAATGCAAAAATTAAC--TGAGGCAATGTTTCATAGATTCATCATGGTGTGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21113140 135 -  24206276 ATCCCC--TACCTATTCTAATTCATTTGC---CAACTCCAC-TTAGCATGAAGACCACACACATCATACATGGCTGTAGATAAGGAACGTGAAATGCAAAAATTAAC--TGAGGCAATGTTTCATAGATTCATCATGGTGTGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        28303 135 -   1397330 ATCCCC--TACCTATTCTAATTCATTTGC---CAACTCCAC-TTAGCATGAAGACCACACACATCATACATGGCTGTAGATAAGGAACATGAAATGCAAAAATTAAC--TGAGGCAATGTTTCATAGATTCATCATGGTGTGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        51633 135 -   1784207 ATCCCC--TACCTATTCTAATTCATTTGC---CAACTCCAC-TTAGCATGAAGACCACACACATCATACATGGCTATAGATAAGGAACGTGAAATGCAAAAATTAAC--CGAGGCAGTGTTTCATAGATTCATCATGGCATGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22249475 131 + 158406734 ATCCCC--TACCTATTCTAATCCATTTTC---CAACTCTAC-TTAGCATGAAGGCCACACACATCATACATGGCTATAGATAAGGAATGCGAAATGCAAAAATTA------AGGCAATATTTCATAGATTCATCATGGCATGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50485152 128 +  54856640 ATCCCC--TACCTATTCTAATCCATTTGC---CAACTCTAC-TTAGCATGAAGGCCACACA---CATACATGGCTATAGGTAAGGAACATGAAATGCAAATATTA------AGGCAATATTTCACAGATTCATCATGGCATAA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40656496 131 +  42888418 ATCCTC--TACCTATTCTAATCCATTTGC---CAACTCTAC-TTAGCATGAAGACCACACACATCATACATGGCTATAGATAAGGAACGTGAAATGCAAAAATTA------AGGCAATATTTCATAGATTCATCATGGCATGA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113279870 137 + 116334831 ATCCCC--CACCTAGTCTAATCCAGCTGC---CAGCTCCAC-TCAGCATGAAGACTACACAGGTCATACAGGGCTGTAGGTAAGAAATACGAAATGCAAAAATTAACTGTGAGGCATTATTTCATAGATTCATCAGGGCCTCA
i micMur3.chr9              I 704 I 1
s proCoq1.NW_012142813v1        24980 127 +     80520 tCCCCC--CACCTATTCTAAT-CAGTTGT---CAGCTCCAC-TGAGCATGAAGAC---------CACACATGGCTGTAGATAAGAAACATGAGATGCAAAAATTAACTCTGAGGCATTATTTCATAGATTCATCATGGCCTAA
i proCoq1.NW_012142813v1    I 1 I 47
s otoGar3.GL873530             642603 135 -  36342412 GTCCCC--CTTCTATTCTGATCCCTTTGC---TAACTCTAC-TTAGCATGAAGGCTACACGT--CATACATGGCTATAGATAAGAGACATGAGATGCAAAAATTAATTCTGAGGCATTATTTCAGAGAGTGATCATGACCTCA
i otoGar3.GL873530          C 0 I 1
s mm10.chr7                  81360997 111 + 145441459 ATCCTCCTCACCCACCCTAGCCCATTTCC---TAACTCTAA-TTAACATGGAACCTGCACATGTCAC-CTTGACTGTAGGTAAAAA---TAGGATATATAAATTTGG--TG------------ATAGTTTCAG----------
i mm10.chr7                 I 9 C 0
s canFam3.chr3               54418166 138 +  91889043 ATCCCT--CATCTATTCTCATCCATTTGC---TAATCCTACTTTAGCACATGTGCCTCACCTGTCACACATGGCTGTGGATAAAGAGCATGTGCTATATAAATTAACTCTGAGGCACCAGTTCATACATTCATCATGGCCTCA
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1808182 136 +   3943991 --ACTC--CCCCCATTCTCATCCATTTGCTAACAACTCCAC-ATAGCATAGATACCACACACGTTATAGGTGGTTGTAAATAAAGAACATGAGATGCAGAGATTAAC--TGAGACGTCATTTCACAGATTGATCATGGCCTTA
i dasNov3.JH570731          C 0 I 1
e cebCap1.NW_016107610v1       628281  11 -   2910086 I

a score=488543.000000
s hg38.chr15_KI270850v1_alt    346362 42 +    430880 ATT---GAAAGCTGACACGGGTcagtg-gaaaaaatacaggagcta
s panTro5.chr15              63499737 42 +  83230942 ATT---GAAAGCTGACACGGGTcagtg-gaaaaaatacaggagcta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80456876 42 +  99763055 ATT---GAAAGCTGACACGGGTcagtg-gaaaaaatacaggagcta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        57032 42 -   1709092 ATT---GAAAGCTGAcatgggtcagtg-gaaaaaatacaggagcta
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17208846 42 - 121039945 ATT---GAAAGCTGAcatgggtcagtg-gaaaaaatataggagcta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60897366 45 + 169600520 ATTAAAAAAAGCTGAcatgggtcagtg-gaaaaaatacaggagcca
i rheMac8.chr7              C 0 I 4
s macFas5.chr7              108424106 45 - 171882078 ATTAAAAAAAGCTGAcatgggtcagtg-gaaaaaatataggagcca
i macFas5.chr7              C 0 I 4
s macNem1.NW_012011945v1        34561 45 -   2311642 ATTAAAAAAAGCTGAcatgggtcagtg-gaaaaaatataggagcca
i macNem1.NW_012011945v1    C 0 I 4
s cerAty1.NW_012002657v1        32732 45 -   1987038 ATTAAAAAAAGCTGACACGGGTcagtg-gaaaaaatataggagcca
i cerAty1.NW_012002657v1    C 0 I 4
s chlSab2.chr29              21113275 45 -  24206276 ATTAAAAAAAGCTGAcatgggtcagtg-gaaaaaatataggagcca
i chlSab2.chr29             C 0 I 4
s manLeu1.NW_012106908v1        28438 45 -   1397330 ATTTAAAAAAGCTGAcatgggtcagtg-gaaaaaatataggagcca
i manLeu1.NW_012106908v1    C 0 I 4
s colAng1.NW_012117110v1        51768 42 -   1784207 ATT---AAAAGCTGAcatgggtcagtg-gaaaaaatataggagcca
i colAng1.NW_012117110v1    C 0 I 4
s calJac3.chr6               22249606 42 + 158406734 ACT---GAAAGCTGGCATGggtgagtg-gaaaaaatataggagcta
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50485280 42 +  54856640 ATT---gaaagctggcatgggtcagtg-gaaaaaatatagaagcta
i saiBol1.JH378108          C 0 I 4
s aotNan1.NW_018505940v1     40656627 42 +  42888418 ATT---gaaagctggcatgggtcagtg-gaaaaaatataggagcta
i aotNan1.NW_018505940v1    C 0 I 4
s micMur3.chr9              113280008 42 + 116334831 ATT---GTgagttg-tatgggtcagtgaaaaaaaatataagagcta
i micMur3.chr9              I 1 I 4
s otoGar3.GL873530             642739 34 -  36342412 ACT---GAGAGCC-------AACAGT--AAAGCAATACAGGAGCTA
i otoGar3.GL873530          I 1 C 0
s mm10.chr7                  81361108 41 + 145441459 ACT---GTGAGTTGTCATGGGTCAGT--GCAAAAGTACAGGAGCTG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54418305 42 +  91889043 ACT---gacaggtggcatgggtaggta-aagaggataaaggagcta
i canFam3.chr3              I 1 I 4
s dasNov3.JH570731            1808319 42 +   3943991 ATT---TAgagttggtgtgggccagtg-gaaagaatagaagagcta
i dasNov3.JH570731          I 1 C 0
e proCoq1.NW_012142813v1        25107 47 +     80520 I
e cebCap1.NW_016107610v1       628281 11 -   2910086 I

a score=4127495.000000
s hg38.chr15_KI270850v1_alt    346404 301 +    430880 cagtcagatctggattaaaatcctatctct----gctaattactaCTTA---AAAAT-----TTTTTACGTTATTACTTAA---TTGTGAGATATCATACAT--CAAAGTACAT-AAATGA-CACTGTTTAAGGGC--TAAAGAAAGCAC-CCCGTGTAGGTAAAGAAACAGAACACTGCCAGGGCCCTCACGTTTACTTTTGAAATTAAGTGTTTTCCAGT-A-CTCTTGGAGTAGCTAGTAAAATGAGAGTCCTGAGCTCAGGTCCTGCAATGTATTGCTCAATGGGTCTTC-AAAGCATCCTCTATCCTGTTAAGGATGAG-AA
s panTro5.chr15              63499779 301 +  83230942 cagtcagatctggattaaaatcctatctct----gctaattactaCTTA---AAAAT-----TTTTTACGTTATTACTTAA---TTGTGAGATATCATACAT--CAAAGTACAT-AAATGA-CACTGTTTAAGGGC--TAAAGAAAGCAC-CCCGTGTAGGTAAAGAAACAGAACACTGCCAGGGCCCTCACGTTTACTTTTGAAATTAAGTGTTTTCCAGT-A-CTCTTGGAGTAGCTAGTAAAATGAGAGTCCTGAGCTCAGGTCCTGCAATGTATTGCTCAATGGGTCTTC-AAAGCATCCTCTATCCTGTTAAGGATGAG-AA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80456918 301 +  99763055 cagtcagatctggattaaaatcctatctct----gctaattactaCTTA---AAAAT-----tttttacgttattacttaa---ttgtgagatatcatacat--caaagtacat-aaatga-cactgtttaagggc--taaagaaagcac-cccgtgtaggtaaagaaacagaacactgccagGGCCCTCACGTTTACTTTTGAAATTAAGTGTTTTCCAGT-A-CTCTTGGAGTAGCTAGTAAAATGAGAGTCCTGAGCTCAGGTCCTGCAATGTATTGCTCAATGGGTCTTC-AAAGCATCCTCTATCCTGTTAAGGATGAG-AA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        57074 301 -   1709092 cagtcagatctgaattaaaatcctatctct----gctaattactaCTTA---AAAAT-----TTTTTACGTTATTACTTAA---TTGTGAGATATCATACAT--CAAAGTACAT-AAATGA-CACCATTTAAGGGC--TAAAGAAAGCAC-CCCATGTAGGTAAAGAAACAGAACACTGCCAGGGCCCTCACATTTACTTTTGAAATTAAGTGTTTTCCAGT-A-CTCTTGGAGTAGCTAGTAAAATGAGAGTCCTGAGCTCAGGTCCTGCAATGTATTGCTCAATGGGTCTTC-AAAGCATCCTCTATCCTGTTAAGGATGAG-AA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17208888 296 - 121039945 cagtcagatctggattaaaatcctatctct----gctaattactaCTTA---AAATT-----TTTTTAAGTTATTAC-------TTTTGAGATATCATATAT--CAAAGTACAT-AAATGA-CACCATTTAAGGGC--TAAAGAAAGCAC-CCCGTGTAGGTAAAGAAGCAGAACACTGTCAGGACCCTCACATTTACTTTTGAAATTAAGTGTTTTCCAGT-A-CTCTTGGAGTAACTAGTAAAATGAGAGTCCTGAGCTCAGGTCCTGAAATGTACTGCTCAATGGGTCTTC-AAAGCAT-CTCTATCCTGTTAAGGGTAAG-AA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60897415 295 + 169600520 cggtcagatctggattaaaatcctctctca----gc--attactaCTTT---AAAAT-----TTTTTAAGTTATTGC-------TTTTGAGATATCATACAT--CAAAGTACAT-AAATGA-CACTGTTTAAGGGC--TAAAGCAAGCAC-CCCATGTAGGTAAAGAAACAGAATACTGCTAAGGCCCTCACATTTACTTTTGAAATTAAGTGTTTTCCAGT-A-TTCTTGGAGTAACTAGTAAAATGAGAGTCCTGAGCTCAGGTCCTGAAATGTATTGCTCAATGGGTCTTC-AAAGCATCCTCTTTTCTGTTAAGGATGAG-AA
i rheMac8.chr7              I 4 C 0
s macFas5.chr7              108424155 297 - 171882078 cagtcagatctggattaaaatcctctctct----gctaattactaCTTT---AAAAT-----TTTTTAAGTTATTGC-------TTCTGAGATATCATACAT--CAAAGTACAT-AAATGA-CACTGTTTAAGGGC--TAAAGCAAGCAC-TCCATGTAGGTAAAGAAACAGAATACTGCTAAGGCCCTCACATTTACTTTTGAAATTAAGTGTTTTCCAGT-A-TTCTTGGAGTAACTAGTAAAATGAGAGTCCTGAGCTCAGGTCCTGAAATGTATTGCTCAATAGGTCTTC-AAAGCATCCTCTTTTCTGTTAAGGATGAG-AA
i macFas5.chr7              I 4 C 0
s macNem1.NW_012011945v1        34610 297 -   2311642 cagtcagatctggattaaaatcctatctct----gctaattactaCTTT---AAAAT-----TTTTTAAGTTATTGC-------TTTTGAGATATCATACAT--CAAAGTACAT-AAATGA-CACTGTTTAAGGGC--TAAAGCAAGCAC-CCCATGTAGGTAAAGAAACAGAATACTGCTAAGGCCCTCACATTTACTTTTGAAATTAAGTGTTTTCCAGT-A-TTCTTGGAGTAACTAGTAAAATGAGAGTCCTGAGCTCAGGTCCTGAAATGTATTGCTCAATGGGTCTTC-AAAGCATCCTCTTTTCTGTTAAGGATGAG-AA
i macNem1.NW_012011945v1    I 4 C 0
s cerAty1.NW_012002657v1        32781 297 -   1987038 cagtcagatctggattaaaatcctatctct----gctaattactacttt---aaaat-----tttttaagttactGC-------TTTTGAGATATCATACAT--CAAAGTACAT-AAATGA-CACTGTTTAAGGGC--TAAAGCAAGCAC-CCCGTGTAGGTAAAGAAACAGAATACTGCTAAGGCCCTCACATTTACTTTTGAAATTAAGTGTTTTCCAGT-A-TTCTTGGAGTAACTAGTAAAATGAGAGTCCTGAGCTCAGGTCCTGAAATGTATTGCTCAATGGGTCTTC-AAAGCATCCTCTTTTCTGTTAAGGATGAG-AA
i cerAty1.NW_012002657v1    I 4 C 0
s chlSab2.chr29              21113324 297 -  24206276 cagtcagatctggattaaaatcctatctct----gctaattactaCTTT---AAAAT-----TTTTTAAGTTATTGC-------TTTTGAGATATCATACAT--CAAAGTACAT-AAATGA-CACTGTTTAAGGGC--TAAAGCAAGCAC-CCCGTTTAGGTAAAGAAACAGAATACTGCTAAGGCCCTCACATTTACTTTTGAAATTAAGTGTTTTCCAGT-A-CTCTTGGAGTAACTAGTAAAATGAGAGTCCTGAGCTCAGGTCCTGAAATGTATTGCTCAATGGGTCTTC-AAAGCATCCTCTTTTCTGTTAAGGATGAG-AA
i chlSab2.chr29             I 4 C 0
s manLeu1.NW_012106908v1        28487 297 -   1397330 cagtcagatctggattaaaatcctatctct----gctaattactacttt---aaaat-----tttttaagttactGC-------TTTTGAGATATCATACAT--CAAAGTACAT-AAATGA-CACTGTTTAAGGGC--TAAAGCAAGCAC-CCCGTGTAGGTAAAGAAACAGAATACTGCTAAGGCCCTCACATTTACTTTTGAAATTAAGTGTTTTCCAGT-A-TTCTTGGAGTAACTAGTAAAATGAGAGCCCTGAGCTCAGGTCCTGAAATGTATTGCTCAATGGGTCTTC-AAAGCATCCTCTTTTCTGTTAAGGATGAG-AA
i manLeu1.NW_012106908v1    I 4 C 0
s colAng1.NW_012117110v1        51814 297 -   1784207 cagtcagatctggattaaaatcctatctct----gctaattactacttt---gaaat-----tttttaagttattGC-------TTTTGAGATATCATACAT--CAAAGTACAA-AAATGA-CACAGTTTAAGGGC--TAAAGCAAGCAC-CCCGTGTAGGTAAAGAAACAGAACACTGCTAAGGCCCTCACATTTACTTTTGAAATTAAGTGTTTTCCAGT-A-CTCCTGGAGTAGCTAGTAAAATGAGAGTCCTGAGCTCAGGTCCTGAAATGTATTGCTCAATGGGTCTTC-AAAGCATCCTCTTTTCTGTTAAGGATGAG-AA
i colAng1.NW_012117110v1    I 4 C 0
s calJac3.chr6               22249648 301 + 158406734 cagtcagatctgaattaaaatcctacctct----gctaagtact--TTA---AAAAT-----Tttttaagttattacttaa---ttttgagatatcatacat--caaagtacat-aaacga-cactgtttaaaggctataaagaaagtac-cccat-tacgtaaagaaacagaacactgccagggccctcaaaTTTACTTTTAAAATTAAGTGTTTTTCAGT-A-CTCTTGGAGTAACTAGTAAAATGAAAGTCCTGAGCTCAGGTCCTGTAATGGATTTCTCGATGGGTCTTC-AAAGCATTTTTTATCCTGTTAAGGATGAGAAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50485326 298 +  54856640 cagtcagatctgaattaaaatcctacctct----gctaagtac---tTA---AAAAT-----TTTTTAAGTTACTACTTAA---TTTTGAGATATCATACAT--CAAAGTACAT-AAATGA-CACTG-TTAAAGGC--TAAAGAAAGTAT-CCCATGTAGGTAAAGAAACAGAACACTGCCAGGGCCCTCAAATTTCCTTTTAAAATGAAGTGTTTCTCAGT-G-CTCTCGGAGTAACTAGTAAAATGAAAGTCCTGAGCTCAGGTCCGAAAATGTATTGCTCGATGGGTCTTC-AAAGCATTCTTTATCCTGTTAAGGATGAGAAA
i saiBol1.JH378108          I 4 C 0
s cebCap1.NW_016107610v1       628292 297 -   2910086 cagtcagatctgaattaaaatcctacctct----gctaagtac---tTA---AAAA------ATTTTAAGTTATTACTTAA---TTTTGAGATATCATACAT--CAAAGTACAT-AAATGA-CATTG-TTGAAGGC--TAAAGAAAGTAC-CTCATGTAGGTAAAGAAACAGAACACTGCAAGGGCCCTCAAATTTACTTTTAAAATTAAGTGTTTTTCAGT-A-CTCTTGGAATAACTAGTAAAATCAAAGTCCTGAGCTCAGGTCCTAAAATGTATTGCTCGATGGGTTTTC-AAAGCATTCTTTATCCTGTTAAGGATGAGAAA
i cebCap1.NW_016107610v1    I 11 C 0
s aotNan1.NW_018505940v1     40656673 299 +  42888418 cagtcagatctgaattaaaatcctacctct----gctaagtact--tta---aaaa------attttaagttattacttaa---tttTAAGATATCATACAT--CAAAGTACAT-AAATGA-CATTGTTTAAAGGC--CAAAGAAAGTAC-CCCATGTAGGTAAAGAAACAGAACACTGCCAGGGCCCTTAAATTTACTTTTAAAATTAAGTGTTTTTCAGT-A-CTCTCGGAGTAATTAGTAAAATGAAAGTCCTGAGTTCAGGTCCTGAAATGTATTGCTCGATGGGTCTTC-AAAGCGTTCTTTATCCTGTTAAGGATGAGAAA
i aotNan1.NW_018505940v1    I 4 C 0
s micMur3.chr9              113280054 302 + 116334831 tagtcacatctggattaaaatcctagtcct----gctaattactaacct---aag-------tttttaaattatcacttaacatttttgagATAACATGTTT--CAAGGTAGAT-AAATGG-TATCATTTAAAGGC--TAAAGAAGGTA--CCAGTGTAGGTCAAAAAACAAAACACTGCCAGGGCCCCCACATTTACTTCCGGAATTAACTGTTTTCCAACAA-CTCTTGAAGTAACTACTAAAATGAGAGTCTTCAGTTCAAGTCCTGAGAAGTATTGCTCAATGGGCATTC-AAAGCACCCTCAACTCTGTTGAGGATAAA-AA
i micMur3.chr9              I 4 I 46
s proCoq1.NW_012142813v1        25154 302 +     80520 tagtcacatctggattaaaatcctagtcct----gctaatcactaacct---aag-------tttttaaattatcacttaaaatttttgagATAACATGTAT--CAAGGTAGAT-AAATGA-TATCATTTAAAGGC--TAAAGAAAGCA--CCAGTGTAGGTCAAAAAACAGAACATTGCCAGGGCCCGCACATTTACTTCTGCAATTAACTGTTTTCCAGCAA-CAACTGGAGTAACTAGTAAAATGAGAGTCCTCAGTTCAGGTCCTGAAACGTATTGCTCAATGGGTACTG-AAAGCACCCTCAACTCTGTTGAGGATAAA-AA
i proCoq1.NW_012142813v1    I 47 I 1
s otoGar3.GL873530             642773 284 -  36342412 --GTCAGACCAGTATTAAAATCCTAGCCTT----GCTAATTACCATCAG---AAG-------TTTTAAAATGATCTCCTAAAAATTTTCAGATAACATATATAAAAAGGTATAA-AAATGA-TATCATTTAAAGGC--TAAAGAAAGTA--CCCATGTAAGCTGAGAAACAGAACACTGTCAGGGCCTCCACATTTACTTTTGAAATTAGCTGCTTT-------------------ACTAGTTACTTCACAGTCTTCAGTAAAGGTCCTGA-ATATAATCCTCAGTGAGTATTCAAAAGCACCCTCAGTTCTGCTGAGGATAAG-AA
i otoGar3.GL873530          C 0 I 1
s mm10.chr7                  81361149 288 + 145441459 GAGTCACATCTACACCACAATCCCAGTGTTAATGGTTAATTATGACTTA---TTAATGTCAGGTATTAAAACACTACTTATGAACTTTGGGACATTATACAC--AGAGGtatat-aaataa-tattttttaaaGAC--TAAAAAGAAAACATCCATGTACTTCAAGAAACAGAACACTGACAAGATGCTCATATTTACTT-TGAAATCTACTGTTCTATAAC-A---------------AGTAAAA----GATACTGGACT------CTAACATACATTTCTC-ATGGACATTC-AAAGTGTCTCTGAGTTTGCTAAGAGTGAA-CA
i mm10.chr7                 C 0 I 1
s canFam3.chr3               54418351 300 +  91889043 cagcctgactgggtttaaaattctggctct----gataattactaatgc---atgat-----tttTAAAATCTTCCCTTAGAAATTTTGAGATAACACATGT--AAAGGTACAT-AAATGGTTACTGTTTCAAGGC--TAAAGAAAAT-C-ACCAAGCAGGCCAAGAAACAGAACAATGCAAGAACTCCCATATTAACTTTTGAAATTAACT--TTCTCAAA-G-CTCTTGAAGTAACTTGTAAAAAGAGACTCTGCTGCTTGGGTCCTGAAATGTATGGCTTGAGGAGTGTAT-AAGGCACCCTCTATTCCGTAGAGAATAAG---
i canFam3.chr3              I 4 C 0
s dasNov3.JH570731            1808361 294 +   3943991 gactcagatctggagtaaagctctagccct----gctacttattaaccacgtgattt-----ttttaaaagtatcacttaaaatttttgagATATTATACAT--AAGGGTATATAAAATGA-TAC-------AGGT--TAAAGGAAACA--TCCATGTAGGTCAAGAAACAGAGTACTGTTGGGACCCCCATATTTACTTTTGAAAT----TGTTTTCCAAT-AGCTCTTAGAGGAACTAGTAAAA--ACAGTCCTTGGTACAGGTCCTGAAGTTTACTGCTCAGTGGGTAAA--AAAGAATCCTCGACTGTGCTGAGGATGAA-AA
i dasNov3.JH570731          C 0 I 1

a score=536388.000000
s hg38.chr15_KI270850v1_alt    346705 41 +    430880 CTCTACAAATGTCC---ACAATAATCTCCACTCCTCCCCTCATC
s panTro5.chr15              63500080 41 +  83230942 CTCTACAAATGTCC---ACAATGATCTCCACTCCTCCCCTCATC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80457219 41 +  99763055 CTCTACAAATGTCC---ACAATGATCTCCACTCCTCCCCTCATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        57375 41 -   1709092 CTCTACAAATGTCC---ACAATGATCTCCGCTCCTCCCCTCATC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17209184 41 - 121039945 CTCTACAAATGTCC---ACAATGATCTCCACTCCTCCCCTCATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60897710 41 + 169600520 CTCTACAAATGTTC---ACAATGGTCTCCACTCCTCCCCTCATC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108424452 41 - 171882078 CTCTACAAATGTTC---ACAATGGTCTCCACTCCTCCCCTCATC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        34907 41 -   2311642 CTCTACAAATGTTC---ACAATGGTCTCCACTCCTCCCCTCATC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        33078 41 -   1987038 CTCTACAAATGTCC---ACAATGGTCTCCACTCCTCCCCTCATC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21113621 41 -  24206276 CTCTACAAACGTCC---ACAATGGTCTCCACTCCTCCCCTCATC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        28784 41 -   1397330 CTCTACAAATGTCC---ACAATGGTCTCCACTCCTCCCCTCATC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        52111 41 -   1784207 CTCTACAAATATCC---ACAATGGTCTCCACTCCTCCCCTCATC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22249949 41 + 158406734 CTCTACAAATGTCC---ACAATAGGTTCCATTCCTCCCCTCATC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50485624 41 +  54856640 CTCTACAAATGTCC---ACAATGGGCTCCACTCCTCCCCTCATC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       628589 41 -   2910086 CTCTACAAATGCCC---ACAATGGGCTCCTCTCCTCCCCTCATC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40656972 41 +  42888418 CTCTACAAATATCC---ACAATGGCCTCCACTCCTCCCCTCATC
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        25457 44 +     80520 CTCTACGTATGTTCCCCATAATGGCGTCTACTGCTCCCCTCATC
i proCoq1.NW_012142813v1    I 1 C 0
s otoGar3.GL873530             643058 44 -  36342412 CTCTGTATGTGCTCCTGATAATGGCATCTGCTGCACCTCTCCCT
i otoGar3.GL873530          I 1 C 0
s mm10.chr7                  81361438 38 + 145441459 CCACACAAAGGTGC---CTGATGGCCTC---TCTTGCCTGCATC
i mm10.chr7                 I 1 C 0
s canFam3.chr3               54418651 41 +  91889043 TTCCATACACGTTC---GCAGTGGTCTCCACCACTTCCGTCATC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1808656 30 +   3943991 CTCTATAGATGCTC--------------CACTACTACCATCACC
i dasNov3.JH570731          I 1 C 0
e micMur3.chr9              113280356 46 + 116334831 I

a score=18543452.000000
s hg38.chr15_KI270850v1_alt    346746 1171 +    430880 CCATCTCCCAGCCTGCATTCCAGGGGACAGGCAT-CCCAT----------------AG---ATATTG-TACCCTCCTTCCCC-TTGGACACA--CACAGGCAACTCCAC--CCACAACT-CCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGATCGAGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGAGGGTGCTGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAG------GAGGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGAGATACCAAAGGCAA----GACAACTAAAAGCATGCCAGCAAAAC-----ACAATATAATGAACAGATATATATCCAGCTCTGAGACCTGGCCGC-AAGGGCCTTGTTAGAGGAAGTTACAA--------GCTGACTG----AAGACCAGAGTTCCTGCTGTTACAATAGCAGCAAAACTGCTGGGTTATACTACCCAGGCTTA---AAAGGTCAATGCCAGTACTTGGGAAAC----TGTCACTGGGGTCCCT----GGTCACAGCTGC--TATTAATGCCTGGATACACCTA-------------------------CAGCACAGTTAGAAATCCCAAACCATACTTCATCTTTACTG---CCTGACGATTTGTTTATTAGAAGAATTCTCACCTTTCTAATGCTAT--------AATATAGAATTTCAGGCCACACCCCAGAAATCTGGTATAGCATAAGCATACCACCTCATGTGAGAGGTTCACTTATGCAAACTTCTAGCATATACAGATTCTCTT-CAATGTAC------CCCTGAACTTGAAATGTTTAGGATGGAAGcagaatgacatggttaagcccattctttgactt-------aaacttaggattaaaccc--tgtgtctgacacctcttgtatatgtctgtgagctctgggaagctcacttagct---tctctgaccctct---gttttctcactggcatttagggtggagtatcaac------tatttcatgacattgttaggacagctcaataatt-agataccagatggaaagagctcagcaca------gtagcacccagcacacaat----aaatatttaaATATGAAAC
s panTro5.chr15              63500121 1171 +  83230942 CCATCTCCCAGCCTGCATTCCAGGGGACAGGCAT-CCCAT----------------AG---ATATTG-TACCCTCCTTCCCC-TTGGACACA--CACAGGCAACTCCAC--CCACAACT-CCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGATCGAGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGGGGGTGCTGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAG------GAGGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGAGATACCAAAGGCAA----GACAACTAAAAGCGTGCCAGCAAAAC-----ACAATATAATGAACAGATATATATCCAGCTCTGAGACCTGGCCGC-AAGGGCCCTGTTAGAGGAAGTTACAA--------GCTGACTG----AAGACCAGAGTTCCTGCTGTTACAATAGCAGCAAAACTGCTGGGTTCTGCTACCCAGGCTTA---AAAGGTCAATGCCATTACTTGGGAAAC----TGTCACTGGGGACCCT----GGTCACAGCTGC--TATTAATGCCTGGATACACCTA-------------------------CAGCACACTTAGAAATCCCAAACCATACTTCATCTTTACTG---CCTGACGATTTGTTTATTAGAAGAATTCTCACCTTTCTAATGCTAT--------AATATAGAATTTCAGGCCACACCCCAGAAATCTGGTATAGCATAAGCATACCACCTCATGTGAGAGGTTCACTTATGCAAACTTCTAGCATATACAGATTCTCTT-CAATGTAC------CCCTGAACTTGAAATGTTTAGGATGGAAGCAGAATGACATGGTTAAGCCCATTCTTTGACTT-------aaacttaggatgaaaccc--tgtgtctgacacctcttgtatatgtctgtgagctctgggaagctcacttagct---tctctgaccctct---gttttctcactggcatttagggtggagtatcaac------tatttcatgacattgttaggacagctcaataatt-agataccagatggaaagagctcagcaca------gtagcacccagcacacaat----aaatatttaaATAGGAAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80457260 1171 +  99763055 CCATCTCCCAGCCTGCATTCCAGGGGACAGGCAT-CCCAT----------------AG---ATATTG-TACCCTCCTTCCCC-TTGGACACA--CACAGGCAACTCCAC--CCACAACT-CCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGATCGAGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGGGGGTGCTGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAG------GAGGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGAGATACCAAAGGCAA----GACAACTAAAAGCGTGCCAGCAAAAC-----ACAATATAATGAACAGATATATATCCAGCTCTGAGACCTGGCCGC-AAGGGCCCTGTTAGAGGAAGTTACAA--------GCTGACTG----AAGACCAGAGTTCCTGCTGTTACAATAGCAGCAAAACTGCTGGGTTCTGCTACCCAGGCTTA---AAAGGTCAATGCCATTACTTGGGAAAC----TGTCACTGGGGACCCT----GGTCACAGCTGC--TATTAATGCCTGGATACACCTA-------------------------CAGCACACTTAGAAATCCCAAACCATACTTCATCTTTACTG---CCTGACGATTTGTTTATTAGAAGAATTCTCACCTTTCTAATGCTAT--------AATATAGAATTTCAGGCCACACCCCAGAAATCTGGTATAGCATAAGCATACCACCTCATGTGAGAGGTTCACTTATGCAAACTTCTAGCATATACAGATTCTCTT-CAATGTAC------CCCTGAACTTGAAATGTTTAGGATGGAAGCAGAATGACATGGTTAAGCCCATTCTTTGACTT-------aaacttaggatgaaaccc--tgtgtctgacacctcttgtatatgtctgtgagctctgggaagctcacttagct---tctctgaccctct---gttttctcactggcatttagggtggagtatcaac------tatttcatgacattgttaggacagctcaataatt-agataccagatggaaagagctcagcaca------gtagcacccagcacacaat----aaatatttaaATAGGAAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        57416 1170 -   1709092 CCATCTCCCAGCCTGCATTCCAGGGGACAGGCAT-CCCAC----------------AG---ATATTG-TACCCTCCTTCCCC-TTGGACACA--CACAGGCAACTCCAC--CCACAACT--CCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGATCGAGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGAGGGTGCTGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAG------GAGGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGTGATACCAAAGGCAA----GACAACTAAAAGCATGCCAGCAAAAC-----ACAATATAATGAACAGATATATATCCAGCTCTGAGACCTGGCCAC-AAGGGCCCTGTTAGAGGAAGTTACAA--------GCTGACTG----AAGACCAGAGTTCCTGCTGTTACAATAGCAGCAAAACTGCTGGGTTCTGCTAACCAGGCTTA---AAAGGTCAATGCCAGCACTTGGGAAAC----TGTCACTGGGGACCCT----GGTCACAGCTGC--TATTAATGTCTGGATACACCTA-------------------------CAGCACAGTTAGAAATCCCAAACCATACTTCATCTTTACTG---CCTGACGATTTGTTTATTAGAAGAATTCCCACCTTTCTAATGCTAT--------AATATAGAATTTCAGGCCACACCCCAGAAATCTGGTATAGCATAAGCATACCACCTCATGTGAGAGGTTCACTTATGCAAACTTCTAGCATATACAGATTCTCTT-CAATGTAC------CCCTGAACTTGAAATGTTTAGGATGGAAGCAGAATGACATGGTTAAGCCCATTCTTTGACTT-------aaacttgggatgaaaccc--tgtgtctgacacctcttgtatatgtctgtgagctctgggaagctcacttagct---tctctgaccctct---gttttctcactggcatttagggtggagtatcaac------tatttcataacattgttaggacagctcaataatt-agataccagatggaaagagctcagcaca------gtagcacccagcacacaat----aaatatttaaATATGAAAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17209225 1172 - 121039945 CCATCTCCCAGCCTGCATTCCAGGGGACAGGCAT-CCCAT----------------AG---ATATTG-TACCCTCCTTCCCC-TTGGACACA--CACAGGCAATTCCAC--CCACAACC-CCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGAGCGAGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGAGGGTGCTGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAG------GAGGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGAGATACCAAAGGCAA----GACCACTAAAAGCATGCCAGCAAAAT-----ACAATATAATGAACAGATATATATCCAGCTCTGAGACCTTGCCAC-AAGGGCCCTGTTAGAGGAAGTTACAG--------GCTGACTG----AAGATTAGAGTTCCTGCTGTTACAGTAGCAGCAAAACTGCTGGGTTCTTCTACCCAGGCTTA---AAAGGTCAATGCCAGCACTTGGGAAAC----TGTCACTGGGGACCCT----GGCCACAGCTGC--TATTAATGCCTGGATAGACCTA-------------------------CAGCACAGTTAGAAATCCCAAAACATACTTCATCTTTACTG---CCT----ATTTGTTTATTAGAAGAATTCCCACCTTTCTAATGCTAT--------AATATAGAATTTCAGGCCACACCCCAGAAATCTGGTATAGCATAAGCATACAACCTCACGTGAGAGGTTCACTTATGCAAACTTCTAGCATATACAGATTCTCTT-CAATGTAC------CCTTGAACTTGAAATGTTTAGGATGGAAGGAGAATGACATGGTTAAGCCCATTctttgacttaa--gacaaacttgggatgaaaccc--tgtgtctgacacctcttgtatatgtctgtgagctctgggaagctcacttagct---tctctgaccctct---attttctcactggcatctagggtggagtatcaac------tatttcataacattgttaggacagctcaataatt-agataccagatggaaagagctcagcaca------gtagcacccagaacacaat----aaatatttaaATATGAAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60897751 1173 + 169600520 CCATCTCCCAGCCTGCATTCCAGGGGACAGGCAT-CCCAT----------------AG---ATATTG-TACCCTCCTTCCCC-TTGGACACA--CACAGGCAACTCCAC--CCACAACC-CCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGATCGAGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGAGGGTGCCGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGCACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAG------GAAGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGAGATACCAAAAGCAA----GACCACTAAAAGCATGCCAGCAAAAC-----ACAATATAATGAACAGATATATATCCAGCTCTGAGACCTGGCCAC-AAGGGCCCTGTTAGAGGAAGTTACAG--------GCTGACTG----AAGACCAGAGTTCCTGCTGTTACAGTAGCAGCAAAACTGCTGGGTTCTACTACCCAGGCTT----AAAGGTCAATGCCAGCATTTGGGAAAC----TGTCACTGGGGACCCT----GGTCACAGCTGC--TATTAATGCCTGGATATACCTA-------------------------CAGCACAGTCAGAAATCCCAAACCATACTTCATCTTTACTG----CTGCCAATTTGTTTATTAGAAGAATTCCCACCTTTCTAATGCTAT--------AATATAGGATTTCAGGCCACACCCCAGAAATCTGGTATAGCATAAGCATATCACCTCATGTGAGAGGTTCACTTATGCAAACTTCTAACATATACAGATTCTCTT-CAATGTAC------CCCTGAACTTGAAATGTTTAGGATGGAAGCAGAATGACATGCTTAAGCCCATTctttgacttaa--gacaagcttgggatcaagtcc--tgtgtctgacacctcttgtatatgtctgtgagctctgggaagctcactgagct---tctctgaccctct---attttctcactggcatctagggtggagtatcaac------tatttcataacattgttagg-cagctcaataatc-agataccagatggaaagagctcagcaca------gtagcacccagcacatcat----aaatatttaaACATGAAAC
i rheMac8.chr7              C 0 I 4
s macFas5.chr7              108424493 1168 - 171882078 CCATCTCCCAGCCTGCATTCCAGGGGACAGGCAT-CCCAT----------------AG---ATATTG-TACCCTCCTTCCCC-TTGGACACA--CACAGGCAACTCCAC--CCACAACC-CCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGATCGAGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGAGGGTGCCGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGCACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAG------GAAGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGAGATACCAAAAGCAA----GACCACTAAAAGCATGCCAGCAAAAC-----ACAATATAATGAACAGATATATATCCAGCTCTGAGACCTGGCCAC-AAGGGCCCTGTTAGAGGAAGTTACAG--------GCTGACTG----AAGACCAGAGTTCCTGCTGTTACAGTAGCAGCAAAACTGCTGGGTTCTACTACCCAGGCTT----AAAGGTCAATGCCAGCATTTGGGAAAC----TGTCACTGGGGACCCT----GGTCACAGCTGC--TATTAATGCCTGGATATACCTA-------------------------CAGCACAGTCAGAAATCCCAAACCATACTTCATCTTTACTG----CTGCCAATTTGTTTATTAGAATAATTCCCACCTTTCTAATGC-------------TATAGGATTTCAGGCCACACCCCAGAAATCTGGTATAGCATAAGCATATCACCTCATGTGAGAGGTTCACTTATGCAAACTTCTAACATATACAGATTCTCTT-CAATGTAC------CCCTGAACTTGAAATGTTTAGGATGGAAGCAGAATGACATGCTTAAGCCCATTctttgacttaa--gacaagcttgggatcaagtcc--tgtgtctgacacctcttgtatacgtctgtgagctctgggaagctcactgagct---tctctgaccctct---attttctcactggcatctagggtggagtatcaac------tatttcataacattgttagg-cagctcaataatc-agataccagatggaaagagctcagcaca------gtagcacccagcacatcat----aaatatttaaACATGAAAC
i macFas5.chr7              C 0 I 4
s macNem1.NW_012011945v1        34948 1174 -   2311642 CCATCTCCCAGCCTGCATTCCAGGGGACAGGCAT-CCCAT----------------AG---ATATTG-TACCCTCCTTCCCC-TTGGACACA--CACAGGCAACTCCAC--CCACAACC-CCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGATCGAGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGAGGGTGCCGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGCACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAG------GAAGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGAGATACCAAAAGCAA----GACCACTAAAAGCATGCCAGCAAAAC-----ACAATATAATGAACAGATATATATCCAGCTCTGAGACCTGACCAC-AAGGGCCCTGTTAGAGGAAGTTACAG--------GCTGACTG----AAGACCAGAGTTCCTGCTGTTACAGTAGCAGCAAAACTGCTGGGTTCTACTACCCAGGCTT----AAAGGTCAATGCCAGCATTTGGGAAAC----TGTCACTGGGGACCCT----GGTCACAGCTGC--TATTAATGCCTGGATATACCTA-------------------------AAGCACAGTCAGAAATCCCAAACCATACTTCATCTTTACTG----CTGCCAATTTGTTTATTAGAAGAATTCCCACCTTTCTAATGCTAT--------AATATAGAATTTCAGGCCACACCCCAGAAATCTGGTATAGCATAAGCATATCACCTCATGTGAGAGGTTCACTTATGCAAACTTCTAACATATACAGATTCTCTT-CAATGTAC------CCCTGAACTTGAAATGTTTAGGATGGAAGCAGAATGACATGCTTAAGCCCATTctttgacttaa--gacaagcttgggatcaagtcc--tgtgtctgacacctcttgtatatgtctgtgagctctgggaagctcactgagct---tctctgaccctct---attttctcactggcatctagggtggagtatcaac------tatttcataacattgttaggacagctcaataatc-agataccagatggaaagagctcagcaca------gtagcacccagcacatcat----aaatatttaaACATGAAAC
i macNem1.NW_012011945v1    C 0 I 301
s cerAty1.NW_012002657v1        33119 1174 -   1987038 CCATCTCCCAGCCTGCATTCCAGGGAACAGGCAT-CCCAT----------------AG---ATATTG-TACCCTCCTTCCCC-TTGGACACA--CACAGGCAACTCAAC--CCACAACC-CCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGATCGGGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGAGGGTGCCGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAG------GAGGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGAGATACCAAAGGCAA----GACCACTAAAAGCATGCCAGCAAAAC-----ACAATATAATGAACAGGTATATATCCAGCTCTGAGACCTGGCTAC-AAGGGCCCTGTTAGAGGAAGTTACAG--------GCTGACTG----AAGACCAGAGTTCCTGCTGTTACAGTAGCAGCAAAACTGCTGGGTTCTACTACCCAGGCTT----AAAGGTCAATGCCAGCATTTGGGAAAC----TGTCACTGGGGACCCT----GGTCACAGCTGC--TATTAATGCCTGGATATACCTA-------------------------CAGCACAGTCAGAAATCCCAAACCATACTTCATCTTTACTG----CTGCCAATTTGTTTATTAGAAGAATTCCCACCTTTCTAATGCTAT--------AATATAGAATTTCAGGCCACATCCCAGAAATCTGGTATAGCATAAGCATATCACCTCATGTGAGAGGTTCACTTATGCAAACTTCTAACATATACAGATTCTCTT-CAATGTAC------CCCTGAACTTGAAATGTTTAGGATGGAAGCAGAATGACATGCTTAAGCCCATTctttgacttaa--gacaagcttgggatcaagtcc--tgtgtctgacacctcttgtatatgtctgtgagctctgggaagctcacttagct---tctctgaccctct---attttctaactggcatctagggtggagtatcaac------tatttcataacattgttaggacagctcaataatc-agataccagatggaaagagctcagcaca------gtagcacccagcacatcat----aaatatttaaACATGAAAC
i cerAty1.NW_012002657v1    C 0 I 5
s chlSab2.chr29              21113662 1176 -  24206276 CCATCTCCCAGCCTGCATTCCAGGGCACAGGCAT-CCCAT----------------AG---ATATTGTTACCCTCCTTCCCC-TTGGACACA--CACAGGCAACTCCAC--CCACAACC-CCCCTTTCCCGAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGATCGAGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGAGGGTGCCGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAG------GAGGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTTAAGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGAGATACCAAAGGCAA----GACCACTAAAAGCATGCCAGCAAAAC-----ACAATATAATGAACAGATATATATCCAGCTCTGAGACCTGGCCAC-AAGGACCCTGTTAGAGGAAGTTACAG--------GCTGACTG----AAGACCAGAGTTCCTGCTGTTACAGTAGCAGCAAAACTGCTGGGTTCTACTACCCAGGCTT----AAAGGTCAATGCCAGCATTTGGGAAAC----TGTCACTGGGGACCCT----GGTCACAGCTGC--TATTAATGCCTGGATACACCTA-------------------------CAGCACAGTCAGAAATCCCAAACCATACTTCATCTTTACTG----TTGCCAATTTGTTTATTAGAAGAATTCCCACCTTTCTAAAGCTAT--------AATATAGAATTTCAGGCCACACCCCAGAAATCTGGTATAGCATAAGCATACCACTTCATGTGAGAGGTTCACTTATGCAAACTTCTAACATATACAGATTCTCTT-CAATGTAC------CCCTGAACTTGAAATGTTTAGGAAGGAAGCAGAATGACATGCGTAAGCCCATTctttgacttaa--gacaagcttgggatcaagtcc--tgtgtctgacacctcttatatatgtctgtgagctctgggaagctcacttagct---tctctgaccctct---attttctcactggcatctagggtggagtatcaac------tatttcataacattgttaggacagctcaataatc-agataccagatggaaagagctcagcaca------gtagcacccggcacatcat----aaatatttaaACACGAAAC
i chlSab2.chr29             C 0 I 5
s manLeu1.NW_012106908v1        28825 1174 -   1397330 CCATCTCCCAGCCTGCATTCCAGGGGACAGGCAT-CCCAT----------------AG---ATATTG-TACCCTCCTTCCCC-TTGGACACA--CACAGGCAACTCCAC--CCACAACC-CCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGATCGGGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGAGGGTGCTGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAG------GAGGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGAGATACCAAAGGCAA----GACCACTAAAAGCATGCCAGCAAAAC-----ACAATATAATGAACAGATATATATCCAGCTCTGAGACCTGGCCAC-AAGGGCCCTGTTAGAGGAAGTTACAG--------GCTGACTG----AAGACCAGAGTTCCTGCTGTTACAGTAGCAGCAAAACTGCTGGGTTCTACTACCCAGGCTT----AAAGGTCAATGCCAGCATTTGGGAAAC----TGTCACTGGGGACCCT----GGTCACAGCTGC--TATTAATGCCTGGATATACCTA-------------------------CAGCACAGTCAGAAATTCCAAACCATACTTCATCTTTACTG----CTGCCAATTTGTTTATTAGAAGAATTCCCACCTTTCTAATGCTAT--------AATATAGAATTTCAGGCCACACCCCAGAAATCTGGTATAGCATAATCATACCACCTCATGTGAGAGGTTCACTTATGCAAACTTCTAACACATACAGATTCTCTT-CAATGTAC------CCCTGAACTTGAAATGTTTAGGATGGAAGCAGAATGACATGCTTAAGCCCATTctttgacttaa--gacaagcttgggatcaagtcc--tgtgtctgacacctcttgtatatgtctgtgagctctgggaagctcacttagct---tctctgaccctct---attttctcactggcatctagggtggagtatcaac------tatttcataacattgttaggacagctcaataatc-agataccagatggaaagagctcagcaca------gtagcacccagcacatcat----aaatatttaaACATGAAAC
i manLeu1.NW_012106908v1    C 0 I 5
s colAng1.NW_012117110v1        52152 1170 -   1784207 CCATCTCCCAGCCTGCATTCCAGGGGACAGGCAT-CCCAT----------------AG---ATATTG-TACCCTCCTTCCCC-TTGGACACA--CACAGGCAACTCCAC--CCACAACC-CCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGATCGAGAGTCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACTGAGGGTGCCGGAAACTTGTCCACCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAG------GAGGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTCTCCTACAGCCACCCAACAAGAGATACCAAAGGCAA----GGCCACTAAAAGCATGCCAGCAAAAC-----ACAATATAATGAACAGATATATATCCAGCTCTGAGACCTGGCCAC-AAGGGCCCTGTTAGAGGAAGTTACAG--------GCTGACTG----AAGACCAGAGTTCCTGCTGTTACAGTAGCAGCAAAACTGCTGGGTTCTACTACCCAGGCTT----AAAGGTCAATGCCAGCATTTGGGAAAC----TGTCACTGGGGACCCT----GGTCACAGCTGCTATATTAATGCCTGGATACACCTA-------------------------CAGCACAGTCAGAAATCTCAAACCATACTTCATCTTTACTG----CTGCCAATTTGTTTATTAGAAGAATTCCCACCTTTCTAATGCTAT--------AATATAGAATTTCAGGCCACACCCCAGAAATCTGGTATAGCATAAGCATATCACCTCATGTGAGAGGTTCACTTATGCAAACTTCTAACATAGACAGATTCTCTT-CAATGTAC------CCCTGAACTTGAAATGTTTAGGATGGAAGCAGAATGTCAT------GCCCATTctttgacttaa--gacaagcttgggatcaagtcc--tgtgtctgacacctcttgtatatgtctgtgagctctgggaagctcacttagct---tctctgaccctct---attttctcactggcatctagggtggagtatcaac------tatttcataacattgttaggacagctcaataatc-agataccagatggaaagagctcagcaca------gtcgtacccagcacataat----aaatatttaaACATGAAAC
i colAng1.NW_012117110v1    C 0 I 6
s calJac3.chr6               22249990 1173 + 158406734 CCACCTCCCAACCTACATTCCAGGGGACAGGCAT-CCCAC----------------AG---ATATTG-TACCCTCCTATCCC-TTGGAGACA--CACAGGCAACTCCAC--CCACAACC-CCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCCGAGTCAGAGGGACTGCTAGATCGAGAGTCCAGGATAGGCCGGGTGTCCAGGCGTGATCCTCTAACAGAGGGTGCTGGAAACTTGT---CCAAGTCAGACCCAAGGGGATCCAGAGGAAGGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGCAGCATGCTCAGTACTAG------GAGGACAA-----------------------------------AA-AAGGAAACCTCACGACCTCTTAAGTTTTCTTTGCAGCCAGCAG--CCTCTTTCTTTTCCCACAGCCACCCAACAAGAGACACCAAAAGCAA----GACCACTAAAAGCATGCCAACAAAAC-----AGAATATAACGAACAGATATGTATCTGGCTCTGAGACCTGGCCAC-AAGGGAC-TGTTAGAGGAAGTTACAG--------GCTGACTG----AAGACCAGAGTTCCTGCTATTACAGTAGCAGCAAAACTGCTGGGTTCTGCTACACAGGCTT----AAAGGTCAATGCCAGCATTTGGGAAAC----AGTCACTGGGAACCCT----GGTCACGGC-----TATTAATGTATGAATACACCTA-------------------------CAGCACAGTTAAAAATCCCAAACCATACTTCATCTTTACTC---CCTGTCAATTTGTTTATTAG---AAGTCCCACCTTTCTGATGCTATATAGCTAAAATACAGAATTTCAGGCCACATCCCAGAAATCTGGTATAGCATAAGCATACCACCTCATGTGAGAGGTTCACTTATACAAACTTCTAGCATATGCAGATTCTCTT-CTATGCAC------CCCCGAACTTGAAATGTTTAGGATGgaagcagaatgacatgg-taagcccattctttgagttaa--gacaaacttgggatgaaatcc--tgtgtctgacaccacttgtatatggctaagagctctgggaagctcacttagcc---tctctgatccttc---attttctcactggcatctagggtggagtaccaac------tatttcataacattgttaggacagttcaataatt-agacagcagatggaaagagctcaccaga------gtagcacccagcacacaat----aaatatttaaATATGAAAC
i calJac3.chr6              C 0 I 3
s saiBol1.JH378108           50485665 1176 +  54856640 CCACCTCCCAGCCTACATTCCAGGGGACAGGCAT-CCCAC----------------AG---ACATTG-TACCCCTTTTCCCC-TTGGAGACA--CACAGGCAACTCCAC--CCACAACC-CCTCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGACTGCTAGATCGAGAGTCCAGGATAGGCCGGGTGTCCAGGCGTGATCCTCTAACAGAGGGTGCTGGAAACTTGT---CCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGCAGCATGCTCAGTACTAG------GAGGACAA-----------------------------------AA-AAAGGAAGCCCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTTTCCCACAGCCACCCAACAAGAGACACCAAAGGCAA----GACCACTAAAAGCATGCCAACAAAAC-----AGAATATAACGAACAGATATGTATCTGGCTCTGAGACGTAGCCAC-AAGGGAC-TGTTAGAGGAAGTTACAG--------GCTGACTG----AAGACCAGAGTTCCTGCTATTACAGTAGCAGCAAAACTGCTGGGTTCTGCTACACAGGCTT----AAAGGTCAATGCCAGCATTTGGGAAAC----TGTCACTGGGAACCCT----GGTCATGGC-----TATTAATACCTGAATATATCTA-------------------------CAGCACAGTTAAAAATCCCAAACCACACTTCATCTTTACTC---CTTGTCAATTTGTTTATTAGAATAATTCCCACCTTTCTGATGCTATATAGCTAAAATATAGAATTTCAGGCCACATCCCAGAAATCTGGTATAGCATAAGCATACCACCTGATGTGAGAGGTTCACTTACACAAACTTCTAGCATATGCAGATTCTCTT-CTATGCAC------CCTTGAACTTGAAATGTTCAGGATGgaagcagaatggcgtggttaagcccattctttgagttaa--gacaaacttgagatgaaatcc--tgtgtctgacaccgcttgtatatggctatgagctctgggaagctcacttagcc---tccctgatcctcc---attttctcactggcatctagggtggagtaccaac------tatttcataacattgttaggacagttcaataatt-agacagcagatggaaagagctaaccaga------gtagcacccagcacacaat----aaatatttaaATATGAAAC
i saiBol1.JH378108          C 0 I 2
s cebCap1.NW_016107610v1       628630 1174 -   2910086 CCACCTCCCAGCCTACATTCCAGGGGACAGGCAT-CCCAC----------------AG---ATATTG-TGCCCTTCTTCCCC-TTGGAGACA--CACAGGCAACTCCAC--CAACAACC-CCCCTTTCCCAAATGAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGACTGCTAGATCGAGAGTCCAGGATAGGCCGGGTGTCCAGGCGTGATCCTCTGACAGAGGGTGCTGGAAACTTGT---CCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGCAGCATGCTCAGTACTAG------GAGGACAA-----------------------------------AA-AAGGAAACCTCATGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTTTCCCACAGCCACCCAACAAGAGACACTAAAGGCAA----GACCATTAAAAGCATGCCAACAAAAC-----AGAATATAACGAACAGATATGTATCTGGCTCTGAGATGTGGCCAC-AAGGGAC-TGTTAGAGGAAGTTACAG--------GCTGACTG----AAGACCGGAGTTCCTGCTATTACAGTAGCAGCAAAACTGCTGGGTTCTGCTACACAGGCTT----AAAGGTCAATGCCAGCATTTGGGAAAC----TGTCACTGGGAACCCT----GGTCACGGC-----TATTAATACCTGAATACACCTA-------------------------GAGCACAGTTAAAAATCCCAAACCATACTTCATCTTTACTC---CCTGTCAATTTGTTTATTAGAAGAATTCC--CCTTTCTGATGCTATATAGCTAAAATATAGAATTTCAGGCCACATCCCAAAAATCTGGTATAGCATAAGCATACCACTTCATGTGAGAGGTTCACTTATAGAAACTTCTAGCATATGCAGATTCTCTT-CTATGCAC------CCTCGAACTTGAAATGTTTAGGATGgaagcagaatgacgtagttaagcccattctttgagttaa--ggcaaacttgggatgaaatcc--tgtgtctgacaccacttgtatatggctatgagctccaggaagctcacttagct---tccctgatcctcc---attttctcactggcatctagggtggagtaccaac------tatttcataacattgttaggacagttcgataatt-agacagcagatggaaagagctcaccaga------gtagcacccagcacacaat----aaatatttaaATATGAAAG
i cebCap1.NW_016107610v1    C 0 I 2
s aotNan1.NW_018505940v1     40657013 1176 +  42888418 CCACCTCCCAGCCTACACTCCAGGGGACAGGCAA-CCCAC----------------AG---ATATCG-TACCCTCCTTCCCC-TTGGAGACA--CACAGGCAACTCCAC--CCACAACC-CCCCTTTCCCAAATGAATTACATACAATCAAATCTGAGAGATGATCTGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGACTGCTAGATCGAGAGTCCAGGATAGGTCGGGTGTCCAGGCGTGATCCTCTAACAGAGGGTGCTGGAAACTTGT---CCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGCAGCATGCTCAGTACTAG------GAGGACAA-----------------------------------AA-AAGGAAATCTCTTGACCTCTT-AGTTTTCTTTGCAGCCAACAG--CCTCTTTCTTTTCCCACAGCCACCCAATAAGAGACACCAAAGGCAA----GACCACTAAAAGCGTGCCAACAAAAC-----AGAATATAATGAACAGATATGTATCTGGCTCTGAGACCTGGCCAC-AAGGGAC-TGTTAGAGGAAGTTACAG--------GCTGACTG----AAGACCAGAGTTCCTGCTATTACAGTAGCAGCAAAACTGCTGGGTTCTGCTACACAGGCTT----AAAGGTCAATGCCAGCATTTGGGAAAC----TGTCACTGGGAACCCT----GGTCATGGC-----TATTAATGCCTGAATACACCTA-------------------------CAGCACAGTTAAAAATCCCAAACCATACTTCATCTTTACTC---CTTGTCAATTTGTTTATTAGAAGAATTCCCACCTTTCTGATGCTATATAGCTAAAATACAGAATTTCAGGCCACATCCCAGAAATCTGGTATAGCATAAGAACACCACCTCATGTGAGAGGTTCACTTATACAAACTTCTAGCATATGCAGATTCTCTT-CTATGCAC------CCCCGAACTTGAAATGTTTAGGATGGAAGCAGAATGACATGGTTAAGCCCATTctttgggttaa--gacaaacttgggatgaaatcc--tgtgtctgacaccgcttgtatatggctatgagctctgggaagctcacttagct---tctctgatcctcc---attttctcactggcatctagggtggagtaccaac------tatttcataacattgttaggacagttcaataatt-agacagcagagggaaagagctcaccgga------gtagcaaccagcacacaat----aaatatttaaATATGAAAC
i aotNan1.NW_018505940v1    C 0 I 2
s micMur3.chr9              113280402 1200 + 116334831 CCACCTCCCAGCCTGCATTCCAGTGGACAAGCAT-CCCACTTCAAGCTTTAA----AA---GTACTG-CACCCTCCTTTCCC-CTGGACACC--CACAGGCAACTCCGC--CCTCAACC-CCCCCTTCCCAAGTAAGTTACATACAATCAAATCTGAGAGATGATCTGATCCGGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGACTGCTTGATCGGGAATCCAGGATGGGCCGAGTGTCCAGGCGTGAACCTCTAACAGAGGGTGCTGGAAACTTGT---CCAAGTCAGATCCAAGGGGATCCAGAGGCAAGAAGCTCAAGGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGTAGCATACTCAGTACTAG---------GACAA-----------------------------------AA-AAGGAAACTTCATGACTTCTT-AGTTTTCTTTCCAGCCAACAG--CCTTTCTTTTCTCCCACAGCCACCCAACAAGATATACCAAAGGTAG----GATCACTGAAAGCATGCCAGAAACACAAATTAGAATATAATGAACAGATATACATCCAGCTCTCAGACCTGGCAAT-CAGAGCA-CATTAGAGGCAGTTGCAG--------GATGACTGTCTGAAGACCAGAGTTCCTGCTGTTACTGCAGCAGCAAAACTCTTGCTCTCTGCCATCTAGGCTA----AAGGATCAGTGCAAGCATTTGGGAAACTCTGTGCCACTGGGAACCCT----GATCATAGCTGC--TATTAACATCTAGATACACCTA-------------------------CAACATAATTAGGAAGCCCAAATCATAGTACTACTTTACCA---CCTGCCAATGTGTTTATT---AGAATTTCCACTTTTCTAATGCCACATGGCTAAAATACAGAATCTCAGGCCACATCCCAGAAATCTGGTATAGCATAAGCATGCCATCTCATTTGAGAAGTTCCCTTATACAGACTTCTAACATACACAGACTCTCTT-CTATGCAC------TTCTGAACTTGAAATGTTTAGGATGgaaacagaatgatatggttaagcccactctctgactgaa--gacaaacatggaatgaaaccc--tgggtctaacacctcctatatatggctgtgagctctgggaaactcacttagct---tctctacgcctcc---attttctcactggcaccttgcataaagtaccaactattaatatttcctgacattgtaatgacagtccaatgatt-agatagcaggtgaaaagcgctcagcaca------ccagtgcccagcacac--------GATCTTTAAATATCAAAC
i micMur3.chr9              I 46 I 2
s proCoq1.NW_012142813v1        25501 1201 +     80520 CCACCTCCCAGCCTACATTCCAGTGGACAAGCAT-CCCACTTCAAGCTCTAA----AA---GTACCA-CACCCTCCTTTCCC-TTGGACACC--CACAGGCAATTCCCC--CCTCAACA-TCCCCTTCCCAAGTAAGTTACATACAATCAAATCTGAGAGATGATCTGATCCGGAGCTGAAGCCACTGGTGTCCGAGTCAGAGGGGCTGCTTGATCGGGAATCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACAGAGGGTGCTGGAAACTTGT---CCAAGTCAGACCCAAGGGGATCCAGAGGCAAGAAGCTCAAGGGGGGCTTTCCTAGGACATTTCCCAGTGGGTTATGTAGCATACTCAGTACTAG---------GACAA-----------------------------------AA-AAGGAAACTTCATGACTTCTT-AGTTTTCTTTCCAGCCAACAG--CCTTTCTTTTCTCCCACAGCCACCCAACAAGATATATCAAAGGCAG----GACCACTGAAAGCATGCCAGAAACAC-AATTAGAACATAATGAACAGATATACATCCAGTTCTAATACCTGGCCAT-CAGAGTA-CATTAGAGGTAGTTACAG--------GATGACTGTCTCAAGAGCAGAGTTCCTGATGTTACCATATCAGCAAAACTCTTGCTCTCTGCCATCTAGGCTA----AAGGATCAGTGCAAGCATTTGGGAAACTCTGTGCCACTGGGAACCCT----GATCGCAGCTGC--TATTAATGTCTAGATACACCTA-------------------------CAACATAATTAGGAATCCCAAATCACAGTACTACTTTACCA---CCTCCCAATGTGTTTATTGTAAGAATTCCCACCTTTCTAATGCCATGTGGCTAAAATACAGAATCTCAGGCCACAGCCCAGAAATTTGGTATAGCATAAGCATGCCATCTCATTTGAGAAGTTCCCTTATGCAGACTTCTAGCATATACAGACTCTCTT-CTATGCAC------TCCTGAACTTGAAATGTTTAGGATGgaagcagaatgatacggttaagtccactctctgactaaa--gacaaacgcgggatgaaaccc--tgggtctgacacctactat-tatggctgtgagctctgggaagctcacttagct---tctctaagcctcc---attttctcactggcatcttgcataaagtaccaactattaatatttcctgacgctgttacgacagtccagtaatt-agatagcaggtgaaaagcgctcagcaca------ccagtgcccagcacac--------aatCTTTAAATATCAAAC
i proCoq1.NW_012142813v1    C 0 I 2
s otoGar3.GL873530             643102 1190 -  36342412 CCCTCTCCCAGCCTGCCTTCCAGTGGATAGGTAC-CCTACTCCAAGCTCTAA----AACAGTTACTA-CACTCTCCTTTCCT-TCAGACACA--CACAGGCAACTCCAC--CCTTAACATCCCCCTTACCAAATAAGTTACTTACAATCAAATCTGAAAGATGATCTGATCCAGAGCTGAAGCCACTAGTGTCCGAGTCAGAGGGGCTGCTAGATCGGGAATCCAGGATGGGCCGGGTGTCCAGGCGTGATCCTCTAACAGAGGGTGCTGGAAACTTGT---CCAAGTCAGACCCAAGGGGATCCAGAGGCAGGAAGCTCAAAGGGGGTTTTCCTAGGACATTTCCCAGTGGGTTATGAAGCATGCTCAGTACTAG---------GACAA-----------------------------------AA-AAGAAAACCTCATGACTTCTC-AGTTTTCTTTGCAGCCAACAG--CCTTTCTTTTCTCCCACGACCACCCAACAAGATACACCAAAGGCAA----GGTCATTGAAAGCAAGCCAGAAAAAC-AGTTAGAATATAATGAACAGA-ATACATCTCATCGTAAGACCTGGCCACACAGAGTA-TGTTAGAGGTAGTCACAGGGT-----GACGACTATCTGAAGACCAGAG----TGCTGTTAA-GTAACAGCAAAATTCTTGCTCTCTGCCACCCAGCCTA----AAGGATCAGTGCCAGCATTTGGGAAACTCAGTGCCACTGGGAACCCT----GATCACAGCTGC--TGTTACTGTCTAGATACTCCTA-------------------------CAACACAATTAGGAAACCCAAGTCATAGTAGTTCTTTACTG---TCTGCCAGTGTGCTTATTATAAGCATTTCCACCTTTCTAATGCTGTGTGGCTAAAATATAGGCTCTCAGGCCACATGCCAGGAATCTGGTCCAGCATAAACATGCCGCCTCATCTGAGAAGCTCCC-TGTGCAAACTTGCAGCATAGACAGACCCTCAT-CTA--CGC------CGCTGAACTTCAAA---CTAAGACAGATGCAGAGTGACATGGTTAAGCCCATTCTCTgacttaa--gaggagcctgg-atgaaaccc--tgggtctgacatctcctatacatgcctgtgagctctgggaagctcacttagct---tctctaggcctcc---attttcttattggcatcttgcatggagtgccaac------tatttcctgacatttcta-gacagttcagtaatt-agacagcaagtggaaagtactcggcaga------ccagtgcctagcacac--------aataagtatttatcaaaG
i otoGar3.GL873530          C 0 I 2
s mm10.chr7                  81361476 1179 + 145441459 -------CTACTCTG-------------AGGCAC-CCCTT-TCAATCTCTAAGAC-AG---ATACTG-TAGCAT-CTTCCCC-TAGGA------TACAGATAACTCCACCTCCACACCC-CCCAACTCCTGAGCACATTACATACAATCAAATCTGAGAGATGGTCTGATCCAGAGCTGAAGCCACTCGTGTCTGAGTCAGAGGGGCTGCTAGAACGGGAGTCCAGGATGGGCCGGGTGTCCAGGCGAGATCCTCTAACTGAGGGTGCTGGGAACTTGT---CCAAGTCAGACCCAAGGGGATCCAGAGACAGGAAGCTCAAGGGGGCTTTTCCTAAGACATTTCCCAGTGGATTTTGGAGCATGCTTAATACTAG------GGTGACaaaaaaaaaacaaataaataaataagaagaagaaaagaa-aaggaaTGCTCATAACCTCTT----TTTCTTTCCAGACCAGGC--CCTTTTTTCCCTCCCATAATCACCC--------------AAGGCAGATTTAACCTCTAAGAGCATTTCAGAGACAC-----AGAACATAATGTACAGGTA-ACTGATGGTTTGGAAAGCTGGTCAC-TCAGTCCTCGTTAGA---AGTTACAG--------GATGACTG----ACCACCAGAACTCTTCCTACTAAAGCAACAGCAAAACTGTT---CTCAGCCAC-CAGGCTTAATTAAGGAGTAGTGCTACCATCTGAGGCTC----TGCCACTGGGAACTTT----GGTTATAGTTGC--TATTAATGTCTGGATACACCTG-------------------------CAGTACAACTGGGAAGTCAAAACCATATT---CCTTCACTG---GCTCTCAGTGTGTTTACTAG----ATTCTCGCTTTTCTAGTGACATTTTGTTAAAACACAGAATTATGTGTAACGTACCATAGA-CTAATCTAGCATAAGCATGTC---TCATCT-AGAAGTTCTCTTCTGAAAACTTCTAGCATGCACAAGTTTTCT----ATGCAG------CCCCAAATTTCAAATATTTGGGATGGGAGCAGAATGATCTCATTAAGTTCACTACCTGAG--GA--AACAAACCTGGCATGAAACCC--CTGGTATGAAACCTCTTTCGGATGGCTGT-AACTCTGAAAAGCTCACCTGGATGTGTCTTTTAGCCTCCTAATTCTTCTCACTGGCCTCTTGAGTGAAATACCAAC------TATTTCATAACACTGCTAGCCAGGTTCAATAATC-AGACAGCAGATAAAAAGTGCTCAGCAAA--------AATGCCCAACTCATAATAAACAAATACCTAACTTCAAAAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54418692 1133 +  91889043 CCACCCCCCA-CCCATGTTCTGGGGGACACACAT-CCCCT----------------TG---A------AGCTCACTTGCCCC-------------------------GC--CCA------CCTAACTCCGTGACAAGTTACATACAATCAAATCTGAGAGATGATCTGATCCAGAACTGAAGCCACTTGTGTCTGAGTCAGAGGGGCTGCTAGACCGAGAGTCCAAGATGGGCCGGGTGTCCAGGCGGGATCCTCTAACTGAGGGTGCTGGAAACTTGTCCACCAGGTCAGATCCAAGGGGGTCCAGAGGCAGGAAGCTCAAGGGGGGTTTCCCCAGGACATTGCCCAGTGGGTTGTGAAGCACACTCAGTACTAG------AAGAAAAA-----------------------------------AATAAAGAAGTCTCATGACCTCCT-TGTTTTCTTC----CCAACAGTCCTTCCCTTTTCTCCCACAGCCGCCCAATAAGATACA-CAAAGGCAC----AATCACC-AAAGCACGACAGAACCAC-AGTGAGAGTAGAACGAGCAGATA------------------ATGGCCAA-CCAGG--------GAGGCAGTTCCAGGAC----AGCTATCTG----AAGACCAGAGTACTTGCTG---CAATAGCAGCAAAACTGCT---CTGTGTCACCCAGACTG----CAGGGTCAGT------ATTTGGGAAGC--TGTGCCAGCAGGAACCCT----GGTCACAACTGC--TCTTAACATCTGGGTACACACAT---TGT--ACAAAGGAGACACATTCAACACAGTTAGGAAGCCCAAACCACGGTCCTTCCTGCCTG---CCTGTCAACATATCTATTCAAAGAATTCC-ACCTTTCTAACACTATATAGCTA-TACACAGAATTTCATGCCATGTTCCACAAGTCTGTTTCAACATGAGCACACCAGCTTCTCTGTGAAGCTCCGTCATGCCAAGTCCTTGCACGTACACTCTCTCCTGTCCTGTACAGACTGTCTCCAGCTTCAGACA-CTGAGATGGAAGCAGGACAGTGTGATTAAGCCC--Cctttggctaaa--gacaaacctgggctggaaccccacacgtctgacaccacctctctaaggctgtgtgctccgagaagctcgtggagct-------------ccc---attttctca-tgacatcttgtgtggaataccaac------tgtttcatagctttgtcaggagggttcgataattaagaaagcacatgcaaaatgctcagcaga------gcagtgcctggtacacaat----aaatatttaaATACCAAAC
i canFam3.chr3              C 0 I 49
s dasNov3.JH570731            1808686 1183 +   3943991 -TCGCTCCCAGTCTGCACTC-ATTAGACATGCACACCCACCTCAAACGCTAAAACAAG---ACACTG-CACCCTCTTTCCCCTTTGGACACAGGCACAGGTAA-GCCTC--CCACGAAC---------------AAGTTACATACAATCAAATCTGAGAGATGGTCCGATCCAGAGCTGAAGCCACTGGTGTCTGAGTCAGAGGGGCTGCTAGAGCGGGAGTCCAGAATGGGCCGGGTGTCCAGGCGGGATCCTCTAACTGAGGGTGCTGGAAACTTGTCCACCAAGTCAGACCCAAGAGGATCCAGAGGCAGGAAGCTCAAGGACGGTTTTCCCAAGACATTTCCCAGTGGGTTATGGAGCATGCTCAGTACTAGATGAAGGGGGGAAA-----------------------------------AA-AAAGGAAACTTATGACT--AT-CATTTTCCTCTTGGCCAACAGGCCTTCCCTTCTCTCCCACAGCCACCCACCA----CCACCAAGGATCA-------------AGGCATGCTAGGACCAC-ATTTAGAGTATAATGAACAGATATGCACTTAATATTGAGACCTGGCCAC-TCGGGGCTCATCAGAGGCAGCTACAGAACAACTAACTGTCTG----AAAACCAAAG-TCCTGTT--------------------------CTCTGCCAC-CAGGCTCAA--AAAGGTCAGTATCAGCATTTGGGAAACATCGGGTTACCTGGGATGCTATCCAGTCACAGGTGC--TATTAATTTTTGCACACACTTGCCCATGTTGCTACAGGAGATTCCTTCAACACAACTAGAGAGCCCAAACCATACTCCTTCTTTATTATTGCCTGTCAACCAGTTTATTAGAAGAGTTCC-ACCTCTCTAATGTTGCATAGCTGTAACAGACCATTTGAGGCTATACCACGGAGGTCTGGAATACCATGAGCATGCCACCT-ACCTGAGAAATATCATTATGCAAATACGCAGCCTATGCAGATTATCTT-CTATGTAC------CCCTGAACTTCACAT--TTAGGATAGATGCAAAATg------------------tttga---aagtgacaaatctgggatgaaaccc--tagttgtgacatctcctgtgtatggctctgtgctctggaaagcttgcttagcc---tagctgtgcc-cc---attttctcaccggcacttcaggtgaaataccaac------tacttcctggcattgttatgagagtccaataatt-agttagcggacagaaaatgctgagcagagcaagagcagtgcccagtacacaat----aaatacttaGATATGTAAC
i dasNov3.JH570731          C 0 I 3

a score=144664.000000
s hg38.chr15_KI270850v1_alt    347917 9 +    430880 AAAAAAAGA
s panTro5.chr15              63501292 9 +  83230942 AAAAAAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80458431 9 +  99763055 AAAAAAAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        58586 9 -   1709092 AAAAAAAGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17210397 9 - 121039945 AAAAAAAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60898928 9 + 169600520 AAAAAAAGA
i rheMac8.chr7              I 4 C 0
s macFas5.chr7              108425665 9 - 171882078 AAAAAAAGA
i macFas5.chr7              I 4 C 0
s macNem1.NW_012011945v1        36423 9 -   2311642 AAAAAAAGA
i macNem1.NW_012011945v1    I 301 C 0
s cerAty1.NW_012002657v1        34298 9 -   1987038 AAAAAAAGA
i cerAty1.NW_012002657v1    I 5 C 0
s chlSab2.chr29              21114843 9 -  24206276 AAAAAAAAA
i chlSab2.chr29             I 5 C 0
s manLeu1.NW_012106908v1        30004 9 -   1397330 AAAAAAAGA
i manLeu1.NW_012106908v1    I 5 C 0
s colAng1.NW_012117110v1        53328 9 -   1784207 AAAAAAAGA
i colAng1.NW_012117110v1    I 6 C 0
s calJac3.chr6               22251166 9 + 158406734 AAAAAAACA
i calJac3.chr6              I 3 C 0
s saiBol1.JH378108           50486843 9 +  54856640 AAAAAAACA
i saiBol1.JH378108          I 2 C 0
s cebCap1.NW_016107610v1       629806 9 -   2910086 AAAAAAACA
i cebCap1.NW_016107610v1    I 2 C 0
s aotNan1.NW_018505940v1     40658191 9 +  42888418 AAAAAAACA
i aotNan1.NW_018505940v1    I 2 C 0
s micMur3.chr9              113281604 9 + 116334831 TGAAAAAGA
i micMur3.chr9              I 2 C 0
s proCoq1.NW_012142813v1        26704 9 +     80520 CAAAAAAGA
i proCoq1.NW_012142813v1    I 2 C 0
s otoGar3.GL873530             644294 9 -  36342412 CAAAAAAGA
i otoGar3.GL873530          I 2 C 0
s mm10.chr7                  81362655 9 + 145441459 AAAAAAAAA
i mm10.chr7                 C 0 I 380
s canFam3.chr3               54419874 9 +  91889043 GACAGAAGA
i canFam3.chr3              I 49 C 0
s dasNov3.JH570731            1809872 9 +   3943991 AAAAAAAGA
i dasNov3.JH570731          I 3 C 0

a score=19000.000000
s hg38.chr15_KI270850v1_alt    347926 1 +    430880 G
s panTro5.chr15              63501301 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80458440 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        58595 1 -   1709092 G
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17210406 1 - 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60898937 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108425674 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        36432 1 -   2311642 G
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        34307 1 -   1987038 G
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21114852 1 -  24206276 G
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        30013 1 -   1397330 G
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        53337 1 -   1784207 G
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22251175 1 + 158406734 G
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50486852 1 +  54856640 G
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       629815 1 -   2910086 G
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40658200 1 +  42888418 G
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113281613 1 + 116334831 G
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        26713 1 +     80520 G
i proCoq1.NW_012142813v1    C 0 C 0
s canFam3.chr3               54419883 1 +  91889043 G
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1809881 1 +   3943991 G
i dasNov3.JH570731          C 0 I 4916
e mm10.chr7                  81362664 380 + 145441459 I
e otoGar3.GL873530             644303 0 -  36342412 C

a score=390999.000000
s hg38.chr15_KI270850v1_alt    347927 28 +    430880 CAACGTTT-TCCACACTTGGCCT-------TGGGGA
s panTro5.chr15              63501302 28 +  83230942 CAACGTTT-TCCACACTTGGCCT-------GGGGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80458441 28 +  99763055 CAACGTTT-TCCACACTTGGCCT-------GGGGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        58596 28 -   1709092 CAACGTTT-TCCACACTTGGCCT-------TGGGGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17210407 28 - 121039945 CAACGTTT-TCCACACTTGGCCT-------TGGGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60898938 28 + 169600520 CAACATTT-TCCACACTTGGCCT-------TGGGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108425675 28 - 171882078 CAACATTT-TCCACACTTGGCCT-------TGGGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        36433 28 -   2311642 CAACATTT-TCCACACTTGGCCT-------TGGGGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        34308 28 -   1987038 CAACATTT-TCCACACTTGGCCT-------TGGGGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21114853 28 -  24206276 CAACGTTT-TCCACACTTGGCCT-------TGGGGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        30014 28 -   1397330 CAACATTT-TCCACACTTGGCCT-------TGGGGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        53338 28 -   1784207 CAACATTT-TCCACACTTGGCCT-------TGGGGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22251176 28 + 158406734 CAACATTT-TCCACACTTGGCCT-------TGGGGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50486853 28 +  54856640 CAACATTT-TCCACACTTGGCCT-------TGGAGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       629816 28 -   2910086 CAACATTT-TCCACACTTGGCCT-------TGGGGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40658201 28 +  42888418 CAACATTT-TCCACACTTGGCCT-------TGGGGA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113281614 29 + 116334831 CAAAATTTCTCCACACTTGGCCT-------TGAGGA
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        26714 29 +     80520 TAAAATTTTTCCATACTTGGCCT-------TGAGGA
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             644303 24 -  36342412 TATAATTTTTGGACACACAACTT-------T-----
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54419884 35 +  91889043 GACATTTT-TCTATCCTTGGCTTGAAGACATAAGGA
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1814798 29 +   3943991 CAACCTTTTTCCACACTTGGCTT-------TGGGGA
i dasNov3.JH570731          I 4916 C 0
e mm10.chr7                  81362664 380 + 145441459 I

a score=1580235.000000
s hg38.chr15_KI270850v1_alt    347955 144 +    430880 --------ACCTAAG-CAAAGCACACCCTCTATCTATGAGAATAAGGAATAAGAGGGCTTTGCCATGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGCCTTAATTTGAAG-----------TT-TTTTTTTTTT-----T-TCATCTGAAGAAT----GAGAACATTCACCTC
s panTro5.chr15              63501330 143 +  83230942 --------ACCTAAG-CAAATCACACCCTCTATCTATGAGAATAAGGAATAAGAGGGCTTTGCCATGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGCCTTAATTTGAAG-----------TT-TTTTTTTTTT-----T--CATCTGAAGAAT----GAGAACATTCACCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80458469 142 +  99763055 --------ACCTAAG-CAAAGCACACCCTCTATCTATGAGAATAAGGAATAAGAGGGCTTTGCCATGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGCCTTAATTTGAAG-----------TT-TTTTTTTTTT--------CATCTGAAGAAT----GAGAACATTCACCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        58624 143 -   1709092 --------ACCTAAG-CAAAGCACACCCTCTATCTATGAGAATAAGGAATAAGAGGGCTTTGCCATGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGCCTTAATTTGAAG-----------TT-TTTTTTTTTT-----T--CATCTGAAGAAT----GAGAACATTCACCTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17210435 140 - 121039945 --------ACCTAAG-CAAAGCACACCCTCTATCTATGAGGATAAGGAATAAGAGGGCTTTGCCATGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGCCTTAATTTGAAG-----------TT-TTTTTTTT----------CATCTGAAGAAT----GAGAACATTCACCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60898966 146 + 169600520 --------ACCTAAG-CAAAGCACACCCTCTATCTATGAGGATGAAGAATAAGAGGGCTTTGGCATGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGACTTAATTTGAAG-----------TTGGTTTTTTTTT-----TTTCATCTGAAGAAT----GAGAACATTCACCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108425703 145 - 171882078 --------ACCTAAG-CAAAGCACACCCTCTATCTATGAGGATGAAGAATAAGAGGGCTTTGGCATGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGACTTAATTTGAAG-----------TT-GTTTTTTTTT-----TTTCATCTGAAGAAT----GAGAACATTCACCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        36461 145 -   2311642 --------ACCTAAG-CAAAGCACACCCTCTATCTATGAGGATGAAGAATAAGAGGGCTTTGGCATGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGACTTAATTTGAAG-----------TT-GTTTTTTTTT-----TTTCATCTGAAGAAT----GAGAACATTCACGTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        34336 146 -   1987038 --------ACCTAAG-CAAAGCACACCCTCTATCTATGAGGATGAAGAATAAGAGGGCTTTGGCACGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGACTTAATTTGAAG-----------TTGTTTTTTTTTT-----TTTCATCTGAAGAAT----GAGAACATTCACCTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21114881 145 -  24206276 --------ACCTAGG-CAAAGCACACCCTCTATCTATGAGGATGAGGAATAAGAGGGCTTTGGCATGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGACTTAATTTGAAG-----------TT-GTGTTTTTTT-----TTTCATCTGAAGAAT----GAGAACATTCACCTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        30042 145 -   1397330 --------ACCTAAG-CAAAGCACACCCTCTATCTATGAGGATGAAGAATAAGAGGGCTTTGGCACGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGACTTAATTTGAAG-----------TT-GTTTTTTTTT-----TTTCATCTGAAGAAT----GAGAACATTCACCTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        53366 156 -   1784207 --------ACCTAAG-CAAAGCATACCCTCTATCTACAAGGATGAGGAGTAAAAGGGCTTTGGCATGGAGCTATGGGT--------GTGCTAAATCTAGGAAAGAAGACTTAATTTGAAGGGGttttttttgt-tttttttttt-----tttCATCTGAAGAAT----GAGAACATTCACCTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22251204 148 + 158406734 --------ACCTAAGACAAAGCACACCCTCTATCCATGAGGATGAGGAATAAGAGGATTTTGCCATGGAGCTATG-----------GTGCTAAATCCAGGGAAGAAGCTTTAATTTAATG-----------GC-TTTTTTTTTTTTTTTTTTCATCTGAAGAAT----GAGAACATTCACCTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50486881 139 +  54856640 --------ACCTAAGGTAAAGCACACCCTCCATCCATGAGGATGAGGAACAAGAGGGCTTTGCCATGGAGCTATG-----------GTGCTGTATCTAGGGAAGAAGCCTTAATTTAATG-----------GG-TTTTTCTTTT---------ATTTGAAAAAT----GAGAACATTCACCTC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       629844 137 -   2910086 --------ACCTAAGGCAAAGCACATCCTCCATCCATGAGGATGAGGAACAAGAGGGCTGTGCCATGGAGCTATG-----------GTGCTAAATCTAGGGAAGAAGCCTTAATTTAATG-----------GT-TTTTTTTTTT----TTTCCATCTGAAAAAT----GAG-------ACCTC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40658229 138 +  42888418 --------ACCTAAGGCAAAGTATACCCTCTATCCATGAGGATGAGAAATAAGAGGGCTCTGCCATGGAGCTATG-----------ATGCTAAATCTAGGGAAGAAGCCTTAATTTAATA--------------TTTTTTTTTT--------CATCTGAAGAAT----GAGAATATTCACCTT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113281643 127 + 116334831 --------ACCTGAG-CAAAGCATACTCTTAATCCAAGAGGATGATGAG------------GACATGGCCCTATGGAG--------GCACTAAGGCTAGGAAAGAAGCcttaatttcatg-----------tt-------tttt--------catctgaagaatggg-gagaatgtccacctc
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        26743 125 +     80520 --------ACCTGAG-CAAAGCACACTTTTAATCCA--ATGAGGATGAG------------GACATGGCACTATGGAG--------GCACTAAGGCTAGGGAAGAAGCcttaatttcatg-----------tt-------tttt--------catctgaagaatggg-gagaacatccacctc
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             644327 101 -  36342412 -------------------------------CTCCA--AGGATGAGGAG------------GACATGGAGCTACAGAG--------GCACTACAGTTAG---AGAAGCCTTAACCTCATG-----------CT-------TCTC--------CATCTGAAGAAAGGGAGAGAACATCCACCTC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81363044 134 + 145441459 --------ACCTGAG-AGAACTGAATCTTTCATCTACAAGGACAAAGAATAAAAGGGCTTTACTATGAAG-TATGGAC--------GAATTAATTTTAAGATAGAAGC-----TTTGACA-----------TT------TTATT--------CATCTGAAGAATAAA-GAAGACATTTGCCTT
i mm10.chr7                 I 380 I 235
s canFam3.chr3               54419920 147 +  91889043 --------TCCAAAG-GAAAATACATCTCTTATCCATGAGAATAAGGAATAAAAGGGCTTTTCCATGGAGC-ATGGGCTTTCCCCAGCACGAAGGCTAGGGAAGGAGCGCTCATCTGATA-----------AT-GTTTTCATCC--------CA--TGACAAGG----GAGCATGTCCACCTC
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1814827 105 +   3943991 AATAAGGGATCTAAGGCAAAGCACATTCTTTATCCACAAGACTGAG---TAAGAGGGCTTTGCAATGGAGCTATGCAG--------GCACTAAGGCT-GGGAAGGAGCCTTCACCTC------------------------------------------------------------------
i dasNov3.JH570731          C 0 C 0

a score=320064.000000
s hg38.chr15_KI270850v1_alt    348099 27 +    430880 AAAATGGCTG--AGGTAAAACCAAAATCA
s panTro5.chr15              63501473 27 +  83230942 AAAATGGCTG--AGGTAAAACCAAAATAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80458611 27 +  99763055 AAAATGGCTG--AGGTAAAACCAAAATAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        58767 27 -   1709092 AAAATGGCTG--AGGTAAAACCAAAATAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17210575 27 - 121039945 AAAATGGCTG--AGGTAAAACCAAAATAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60899112 27 + 169600520 AAAATGGCTG--AGGTAAAACCAAAATAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108425848 27 - 171882078 AAAATGGCTG--AGGTAAAACCAAAATAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        36606 27 -   2311642 AAAATGGCTG--AGGTAAAACCAAAATAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        34482 27 -   1987038 AAAATGGCTG--AGGTAAAACCAAAATAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21115026 27 -  24206276 AAAATGGCTG--AGGTAAAACCAAAATAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        30187 27 -   1397330 AAAATGGCTG--AGGTAAAACCAAAATAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        53522 27 -   1784207 AAAATGGCTG--AGGTAAAACCAAAATAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22251352 27 + 158406734 AAAATGGCTG--AGGTAAAACCAAAATAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50487020 27 +  54856640 AAAATGGATG--AGGCAAAACCAAAATAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       629981 27 -   2910086 AAAATGGCTG--AGGTAAAACCAAAATAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40658367 27 +  42888418 AAAATGGATG--AGGTAAAACCAAAATAA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113281770 28 + 116334831 aaaacagctgtgaggtgaagccaaaac-a
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        26868 28 +     80520 aaaatggctgtgaggtgaaaccaaaac-a
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             644428 20 -  36342412 AAAA----TGTCACAATAATTCA-----G
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81363413 17 + 145441459 ------------AAAATGAACCCAAATAA
i mm10.chr7                 I 235 C 0
s canFam3.chr3               54420067 29 +  91889043 AAAATGGCTGTTAGGTGAAACCAAAGTAg
i canFam3.chr3              C 0 I 378
s dasNov3.JH570731            1814932  6 +   3943991 AGAATG-----------------------
i dasNov3.JH570731          C 0 C 0

a score=3332462.000000
s hg38.chr15_KI270850v1_alt    348126 241 +    430880 TATGTGTAAGTGCTGAATAA---CTGGCTGTGATTGGCCCC-ACTTCCGCCCTGACTAGCAATGAAATGAAACACAGGTCACCCAGAGCTGGTTTCCTCCCAGGCCTCTAAGTCAGTTTGAATGCTTGTCTGGAGCT-G----GAG----TCCCAAGAAGCAGGAATAAACCTCT-CA-AGAC-TGAAATCAAAATCAATGC----ATGCTTTCAGGGTACGAGACACACATGCCATT---GATGGAACA-----------TATACACAAGATCC
s panTro5.chr15              63501500 241 +  83230942 TATGTGTAAGTGCTGAATAA---CTGGCTGTGATTGGCCCC-ACTTCAGCCCTGACTAGCAATGAAATGAAACACAGGTCACCCAGAGCTGGTTTCCTCCCAGGCCTCTAAGTCAGTTTGAATGCTTGTCTGGAGCT-G----GAG----TCCCAAGAAGCAGGAATAAACCCCT-CA-AGAC-TGAAATCAAAATCAATGC----ATGCTTTCAGGGTACCAGACACACATGCCATT---GATGGAACA-----------TATACACAAGATCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80458638 241 +  99763055 TACGTGTAAGTGCTGAATAA---CTGGCTGTGATTGGCCCC-ACTTCAGCCCTGACTAGCAATGAAATGAAACACAGGTCACCCAGAGCTGGTTTCCTCCCAGGCCTCTAAGTCAGTTTGAATGCTTGTCTGGAGCT-G----GAG----TCCCAAGAAGCAGGAATAAACCCCT-CA-AGAC-TGAAATCAAAATCAATGC----ATGCTTTCAGGGTACCAGACACACATGCCATT---GATGGAACA-----------TATACACAAGATCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        58794 239 -   1709092 T--GTGTAAGTGCTGAATAA---CTGGCTGTGATTGGCCCC-ACTTCAGCCCTGACTAGCAATGAAATGAAACACAGGTCACCCAGAGCTGGTTTCCTCCCAGGCCTCTAAGTCAGTTTGAATGCTTGTCTGGAGCT-G----GAG----TCCCAAGAAGCAGGAATAAACCTCT-CA-AGAC-TGAAATCAAAATCAATGC----ATGCTTTCAGGGTACCAGACACACATGCCATT---GATGGAACA-----------TACACACAAGATCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17210602 241 - 121039945 TATGTGTAAGTGCTCAATAA---CTGGCTGTGATTGGCCCC-ACTTGAGCCCTGACTAGCAATGAAATGAAACACAGGTCACCCAGAGCTGGTTTCCTCCCAGGCTTCTAAGTCAGTTTGAATGCTTGTCTGGAGCT-G----GAG----TCCCAAGAAGCAGGAATAAACCTCT-CA-AGAC-TGAAATCAAAATCAATGC----ATGCTTTCAGGGTACCAGAAACACATGCCATT---GACGGAACA-----------TATACACAAGATCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60899139 241 + 169600520 TATGTATAAGTGCTCAATAA---CTGGCTCTGATTGGCCCC-ACTTCAGCCCTGACTAGCAATGAAATGAAACACAGGTCACCCAGAGCTGACTTCCTCCCAGGCCTCTAAGTCAGTTTGAATGCTTGTCTGGAGCT-G----GAG----TCCCAAGAAGCAGGAATAAACCTCT-CA-AGAC-TGAAATTAAAATCAATGC----ATGCTTTCAGGGTACCAGACACACATGCCATT---GATGGAATA-----------TATGCACAAGATCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108425875 241 - 171882078 TATGTATAAGTGCTCAATAA---CTGGCTCTGATTGGCCCC-ACTTCAGCCCTGACTAGCAATGAAATGAAACACAGGTCACCCAGAGCTGACTTCCTCCCAGGCCTCTAAGTCAGTTTGAATGCTTGTCTGGAGCT-G----GAG----TCCCAAGAAGCAGGAATAAACCTCT-CA-AGAC-TGAAATTAAAATCAATGC----ATGCTTTCAGGGTACCAGACACACATGCCATT---GATGGAATA-----------TATGCACAAGATCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        36633 241 -   2311642 TATGTATAAGTGCTCAATAA---CTGGCTCTGATTGGCCCC-ACTTCAGCCCTGACTAGCAATGAAATGAAACACAGGTCACCCAGAGCTGACTTCCTCCCAGGTCTCTAAGTCAGTTTGAATGCTTGTCTGGAGCT-G----GAG----TCCCAAGAAGCAGGAATAAACCTCT-CA-AGAC-TGAAATTAAAATCAATGC----ATGCTTTCAGGGTACCAGACACACATGCCATT---GATGGAATA-----------TATGCACAAGATCC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        34509 241 -   1987038 TATGTATAAGTGCTCAATAA---CTGGCTCTGATTGGCCCC-ACTTCAGCCCTGACTAGCAATGAAATGAAACACAGGTCACCCAGAGCTGACTTCCTCCCAGGCCTCTAAGTCAGTTTGAATGCTTGTCTGGAGCT-G----GAG----TCCCAAGAAGCAGGAATAAACCTCT-CA-AGAC-TGAAATTAAAATCAATGC----ATGCTTTCAGGGTACCAGACACACATGCCATT---GATGGAAGA-----------TATGCATAAGATCC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21115053 241 -  24206276 TATGTATAAGTGCTCAATAA---CTGGCTCTGATTGGCCCC-ACTTCAGCCCTGACTAGCAATGAAACGAAACACAGGTCACCCAGAGCTGACTTCCTCCCAGGCCTCTAAGTCAGTTTGAATGCTTGTCTGGAGCT-G----GAG----TCCCAAGAAGCAGGAATAAACCTCT-CA-AGAC-TGAAATTAAAATCAACGC----ATGCTTTCAGAGTACCAGACACACATGCCATT---GATGGAACA-----------TATGCACAAGATCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        30214 241 -   1397330 TATGTATAAGTGCTCAATAA---CTGGCACTGATTGGCCCC-ACTTCAGCCCTGACTAGCAATGAAATGAAACACAGGTCACCCAGAGCTGACTTCCTCCCAGGCCTCTAAGTCAGTTTGAATGCTTGTCTGGAGCT-G----GAG----TCCCAAGAAGCAGGAATAAACCTCT-CA-AGAC-TGAAATTAAAATCAATGC----ATGCTTTCAGGGTACCAGACACACATGCCACT---GATGGAAGA-----------TATGCATAAGATCC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        53549 241 -   1784207 TATGTGTAAGTGCTCAATAA---CTGGCTCTGATTGGCCCC-ACTTCAGCCCTGACTAGCAATGAAATGAAACACAGGTCACCCAGAGCTGACTTCCTCCCAGGCCTCTAAGTCAGTTTGAATGCTTGTCTGGAGCT-G----GAG----TCCCAAGAAGCAGGAATAAACCTCT-CA-AGAC-TGAAATCAAAATCAATGC----ATGCTTTCAGGGTACCAGACACACATGCCACT---GATGGAATA-----------TATGCACAAGATCC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22251379 234 + 158406734 TATGTGTAAATGCTCAGTAA---CTAGCTGTGATTGGTCCC-ACTACAGCCCTGACTAGCAATAAAATTAA--ACAGGTCACTCA-----GGTTTTCTCCCAGGTCTCTAAGTCAGTCTGAATGCTTGTCTGGAAAT-G----GAG----TCCCAAGAAGCAGGAATAAATCTCT-CA-AGCC-TGAAATCAAAGTCAATGC----ATACTTTCAGGGTGCAAGACACACATGCCACT---GATGGACCA-----------TATGCATAAGATCC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50487047 240 +  54856640 TATGTGTAAATGCTCAGTAA---CTAGCTGTGATTGGTCCT-ACTACAGCCCTGACTAGCAATGAAATTAA--ACATGTCACCCAGAGCTGGTTTTCTCCCAGGCCTCTAAGTCAGTCTGAATGCTTCTCTGGAAATGG----GAG----TCCCAAGAAGCAGGAATAAATCTCT-CA-AGTC-TGAAATCAAAGTGAATGC----ATGCTTTCAGGGTGCAAGACACACATGCCATT---GATGGACCA-----------TATGCACAAGATCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       630008 236 -   2910086 TATGTGTAAATGCTCAGTAA---CTACCTATGATTGGTCCC-ACTACAGCCCTGACTAGCAATGAAATTAA--ACAGGTCACCCAGAGCTGGTATTCTCCCAGGCCTCTAAGTCAGTCTGAATGC---TCTGGAAAT-G----GAG----TCCCAAGAAGCAGGAATAAATCTCT-CA-AGCC-TGAAATCAAAGTGAATGC----ATGCTTTCAGGGTGCAAGACACAAATGCCATT---GATGAACCA-----------TATGCACAAGATCC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40658394 240 +  42888418 TATGTGTAAATGCTCAGTAA---CTAGCTGTGATTGGTCCC-ACTACAGCCCTGACTAGCAATGAAATTAA--ACAGGTCACCCAGAGCTGGTTTTCTCCCAGGCCTCTAAGTCAGTCTGAATGCTTGTCTGAAAATGG----GAG----TCCCAAGAAGCAGGAATAAATCTCT-CA-AGCC-TGAAATCAAAGTCAATGC----ATGCTTTCAGGGTGAAAGACACACATGCCATT---GATGGACCA-----------TATGCACAAGATCC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113281798 249 + 116334831 tatgt-taaatgctcaatatg--gtggctgTGACTGGTTCC-ACTTCAGCCCTGGCTAGCAACCAAACAAAACACAGGTCCTCCAGAACTGGTTTCCTCTCAGGTCTCTAAGTCAGTCTGAATGGTTGGCTAGGGCT-G----CAGTGAATCCCAAGAGGCAGAAATAAATCTCT-CCAAGTA-TGAAAACAAAGTCGTTGC----ATGTTTATAGGGTACCAGACATACATGCCATTCATGACAGAGTA-----------TGTGCACAAGATCC
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        26896 249 +     80520 tatgtgtaagtgctcaatatg--gtggctgTGACTGGCTCC-ACTTCAGCCCTGGCTAGCAACTGAACAAAACATAAGTCAACCAGAACTGGTTTCCTC-CAGGCCTCTAAGTCAGTCTGAATGGCTGGCTGGGGCC-A----GAGTGAATCCCAAGAGGCAGAAATAAACCTCT-CCAAGCC-TGAAACCAAAGTCGATAC----ATGCTTATAAGGTACCCAACATCCATGCCATTCATGACAGAGCA-----------TGTGTACAAGATCA
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             644448 235 -  36342412 CAGGTGTGAGTGCTCAACAG--------------CAGCTCC-ACTTCAGCCCTGACTAGCAACTAAATGAAACACATGTCACCCAGAACTGGTTTCCTCCCAGACCTCTAAGTCCATCTGAATGGTTGGCTAGGGCT-G----AAGTGAATCCCAAGGGGCAGAAATAAACCTCT-CC-AGCC-TGAAAGAAAAGTCAGTGC----ATGCTGGCAGGGTACCAGACACACA--CCATTCACAATTGAGCA-----------TGTGCCCAAGGTCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81363430 209 + 145441459 CA----CAAGTATTCGACAG----TGAGTATAACTGTCTCCTACTACAGCTCTGACTAGCAAGTAAGTG----ACAAGCCACCCAGAGCTGGTTTCTTCCCAGATGTCTAA---------------------------G----CAC---------------AAGAATAAACTTCTCCA-AGTC-TGGAGACAAAGTCAAGTC----AT-CACTTGTGGTACCCGACTAAC-TGCCATTCATGATAGACCATGACAGAACATTACACACAAGATTC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54420474 244 +  91889043 tgtgtgtAGGGGCTCAATCAGCAGTGGCCACGTCTGGCTCC-CCTCCC-------CAGGTCACTGAGTAACACACAGGTC-TCCAGAGCTGACTTGGAACTGGGGTTCCAAGTCAGTCTGACCGACTGCTGGGGGCT-GTGCTAGG----TACCAAGAGGCAGGAATAAACCTCT-CC-AAACATGAAGTCAAAGTGGAAGC----CTGCTCTCGGGGCACCGCACACACGTACCATGCACAACAGAGTG-----------CATGTGCCAGATGC
i canFam3.chr3              I 378 I 257
s dasNov3.JH570731            1814938 212 +   3943991 ---------------------------------TTGGCTcc-act-cagccctgactagcaaatgagtgaaacacaggttggcctgaggtgg-ttcctctcaggtctccaagtgagtctgaatacc--acctgggtt-gcggcaag----tcccaagaggcaggaacccacatct-cc-aagc------acaaaatcagTGCAGGAATGCTTTCAGGG-GCCACACACACAAGCCACTAACAACAGAGCA-----------TATGTAAAAGATCC
i dasNov3.JH570731          C 0 C 0

a score=986544.000000
s hg38.chr15_KI270850v1_alt    348367 69 +    430880 CAAACATCTGTTAATATGGGACCAGACCAG-CCCACGCTCCTTTAGGTATATGACCTCCCCTTTTGGATA-
s panTro5.chr15              63501741 69 +  83230942 CAAACATCTGTTAATATGGGACCAGACCAG-CCCACGCTCCTTTAGGTATATGACCTCCCCTTTTGGATA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80458879 69 +  99763055 CAAACATCTGTTAATATGGGACCAGACCAG-CCCACGCTCCTTTAGGTATATGACCTCCCCTTTTGGATA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        59033 69 -   1709092 CAAACATCTGTTAATATGGGACCAGACCAG-CCCACGCTCCTTTAGGTATATGACCTCCCCTTTTGGATA-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17210843 69 - 121039945 CAAACATCTGTTAATATGGGACCAGACCAG-CCCACTCTCCTTTGGGTGTATGACCTCCCCTTTTGGATA-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60899380 69 + 169600520 CAAAAATCTGTTAATATGGGACCAGACCAG-CCCACTCTCCTTTAGGTATATGACCTCCCCTTTTGGATA-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108426116 69 - 171882078 CAAAAATCTGTTAATATGGGACCAGACCAG-CCCACTCTCCTTTAGGTATATGACCTCCCCTTTTGGATA-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        36874 69 -   2311642 CAAAAATCTGTTAATATGGGACCAGACCAG-CCCACTCTCCTTTAGGTATATGACCTCCCCTTTTGGATA-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        34750 69 -   1987038 CAAAAATCTGTTAATATGGGACCAGACCAG-CCCACTCTCCTTTAGGTATATGACCTCCCCTTTTGGATA-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21115294 69 -  24206276 CAAAAATCTGTTAATATGGGACCAGACCAG-CCCACTCTCCTTTAGGTATATGACCTCCCCTTTTGGATA-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        30455 69 -   1397330 CAAAAATCTGTTAATATGGGACCAGACCAG-CCCACTCTCCTTTAGGTATATGACCTCCCCTTTTGGATA-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        53790 69 -   1784207 CAAAAATCTGTTAATATGGGACCAGACCAG-CCCACTCTCCCTTAGGTATATGACCTCCCCTTTTGGATA-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22251613 69 + 158406734 CAAATGTGTGTTAATATGGGACCAGAGCAGCCCCACTCTCCTTTA-GTATATGACCTCCCCTTTTGGATA-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50487287 68 +  54856640 CAAACGTGTGTTAATATGGGACCAGAGCAG-TCCACTCTCCTTTA-GTATATGACCTCCCCTTTTGGATA-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       630244 68 -   2910086 CAAACGTGTGTTAATATGGGACCAGAGCAG-TCCACTCTCCTTTA-GTATATGACCTCCCCTTTTGGATA-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40658634 68 +  42888418 CAAACGTGTGTTAATATGGGACCAGAGCAG-CCCACTCTCCTTTA-GTATATGACCTCTCCTTTTGGATA-
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113282047 68 + 116334831 CAAGCATCTGTTACTGTGGGATCAGACCAG-CCCACTCTCCTTTTGGCATATGACC-TCCCTTTTGGATA-
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        27145 68 +     80520 CGAATATCTGTTACTATGGGATCAGACCAG-CCCACTCTCCTTTAGGCATATGACC-TCCCTTTTGGATA-
i proCoq1.NW_012142813v1    C 0 I 448
s otoGar3.GL873530             644683 68 -  36342412 TTGACATCTGTT-CTATGTGATCCCATCAG-CCCACTCTCCTTTAGGCGTATGACTAGCCCTTTTGGATA-
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81363639 66 + 145441459 AAAGTAGCTATTACTACAGCATCAGGCCAT-ACCATTATCC-TCAGGCATATGACC--CCCTCCCAGATA-
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1815150 68 +   3943991 -AAACAGCTTTTACTATGGTATCAGGCCAG-CTTACTCTGCTTCAGGCATTTGACCT-TCCTTTCAGATAA
i dasNov3.JH570731          C 0 C 0
e canFam3.chr3               54420718 257 +  91889043 I

a score=17290.000000
s hg38.chr15_KI270850v1_alt    348436 1 +    430880 A
s panTro5.chr15              63501810 1 +  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80458948 1 +  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        59102 1 -   1709092 A
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17210912 1 - 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60899449 1 + 169600520 A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108426185 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        36943 1 -   2311642 A
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        34819 1 -   1987038 A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21115363 1 -  24206276 A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        30524 1 -   1397330 A
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        53859 1 -   1784207 A
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22251682 1 + 158406734 A
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50487355 1 +  54856640 A
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       630312 1 -   2910086 A
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40658702 1 +  42888418 A
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113282115 1 + 116334831 A
i micMur3.chr9              C 0 I 189
s otoGar3.GL873530             644751 1 -  36342412 A
i otoGar3.GL873530          C 0 I 1
s mm10.chr7                  81363705 1 + 145441459 A
i mm10.chr7                 C 0 I 1
s dasNov3.JH570731            1815218 1 +   3943991 A
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        27213 448 +     80520 I
e canFam3.chr3               54420718 257 +  91889043 I

a score=296904.000000
s hg38.chr15_KI270850v1_alt    348437 27 +    430880 GACATGGTAGGTGTATCCTTAAC---------ATTT
s panTro5.chr15              63501811 27 +  83230942 GACATGGTAGGTGTATCCTTAAC---------ATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80458949 27 +  99763055 GACATGGTAGGTGTATCCTTAAC---------ATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        59103 27 -   1709092 GACATGGTAGGTGTATCCTTAAC---------ATTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17210913 27 - 121039945 GACATGGTAGGTGTATCCTTAAC---------ATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60899450 27 + 169600520 GACATGGTAGGTGTATTCTTAAC---------ATTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108426186 27 - 171882078 GACATGGTAGGTGTATTCTTAAC---------ATTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        36944 27 -   2311642 GACATGGTAGGTGTATTCTTAAC---------ATTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        34820 27 -   1987038 GACATGGTAGGTGTATTCTTAAC---------ATTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21115364 27 -  24206276 GACATGGTAGGTGTATTCTTAAC---------ATTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        30525 27 -   1397330 GACATGGTAGGTGTATTCTTAAC---------ATTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        53860 27 -   1784207 GACATGGTAGGTGTATTCTTAAC---------ATTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22251683 27 + 158406734 GATACAGTAGGTGTATTCTTAAC---------ATTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50487356 27 +  54856640 GATATGGTAAGTGTATCCTTAAT---------ATTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       630313 27 -   2910086 GATATGGTAAGCGTATCCTTAAC---------ATTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40658703 27 +  42888418 GATATGGTAGGTGTATCCTTAAC---------ATTT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             644753 36 -  36342412 GATACAGTCAATGCATCCTTAACTTTTATTTTTTTT
i otoGar3.GL873530          I 1 C 0
s mm10.chr7                  81363707 25 + 145441459 GACACAGTA--TGTATGTTTAGC---------CTTC
i mm10.chr7                 I 1 I 8
s dasNov3.JH570731            1815219 14 +   3943991 Gatatgataggtat----------------------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113282116 189 + 116334831 I
e proCoq1.NW_012142813v1        27213 448 +     80520 I
e canFam3.chr3               54420718 257 +  91889043 I

a score=475700.000000
s hg38.chr15_KI270850v1_alt    348464 58 +    430880 AACACAGGGG--AAACTGTAGATATATCTATTTATCTAGTTA-----TTATTT---tgtagtaaaaat
s panTro5.chr15              63501838 58 +  83230942 AACACAGGGG--AAACTGTAGATATATCTATTTATCTAGTTA-----TTATTT---tgtagtaaaaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80458976 58 +  99763055 AACACAGGGG--AAACTGTAGATATATCTATTTATCTAGTTA-----TTATTT---tgtagtaaaaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        59130 58 -   1709092 AACACAGGGG--AAACTGTAGATATATCTATTTATCTAGTTA-----TTATTT---tgtagtaaaaat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17210940 58 - 121039945 AACACAGGGG--AAACTGTAGATATATCTATTTATCTAGTTA-----TTATTT---tgtagtaaaaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60899477 58 + 169600520 AACACAGGGG--AAACTATAGATATATCTACTTATCTAGTTA-----TTATTT---tgtggtaaaaat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108426213 58 - 171882078 AACACAGGGG--AAACTATAGATATATCTACTTATCTAGTTA-----TTATTT---tgtggtaaaaat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        36971 58 -   2311642 AACACAGGGG--AAACTATAGATATATCCACTTATCTAGTTA-----TTATTT---tgtggtaaaaat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        34847 58 -   1987038 CATACAGGGG--AAACTATAGATATATCTACTTATCTAGTTA-----TTATTT---tgtggtaaaaat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21115391 58 -  24206276 AACACAGGGG--AAACTATAGATATATCTACTTATCTAGTTA-----TTATTT---tgtggtaaaaat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        30552 58 -   1397330 AACACAGGGG--AAACTATAGATATATCTACTTATCTAGTTA-----TTATTT---tgtggtaaaaat
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        53887 58 -   1784207 AACACAGGGG--AAACTATAGATATATCTATTTATCTAGTTA-----CTATTT---tgtggtaaaaat
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22251710 49 + 158406734 AACGGAGGG---------TAGATATAT----TTGTCTAGTTA-----TTATTTTACTGTGG-AAAAAt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50487383 50 +  54856640 AATGCAGGG---------TAGATATAT----TTATCTAGTTA-----TTATTTTATtatggtaaaaat
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       630340 50 -   2910086 AACGCAGGG---------TAGATACAT----TTATCTAGTTA-----TTATTTTATtgtggtaaaaat
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40658730 50 +  42888418 AATGCAGGG---------TAGATATAT----TTATCTAGTTA-----TTATTTTATtgtggtaaaaat
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             644789 62 -  36342412 AATGTGGAGG--ATActgtggatgtat----ttatctagttattggtttattttattgtggtaaaaat
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81363740 57 + 145441459 AATGCAGGCA--ACATTGTGGATGCAT----TTATCCATTTA-----TTAGTCTACTGTGGCAAAAAT
i mm10.chr7                 I 8 I 249
s canFam3.chr3               54420975 52 +  91889043 aGTGCAGGGGGCATACTATGAGTATGT-----------GTGT-----TTATTTTGTTCtggtaaatat
i canFam3.chr3              I 257 C 0
s dasNov3.JH570731            1815233  5 +   3943991 --------------------------------tatct-------------------------------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113282116 189 + 116334831 I
e proCoq1.NW_012142813v1        27213 448 +     80520 I

a score=1009650.000000
s hg38.chr15_KI270850v1_alt    348522 99 +    430880 agctttaatttttaaagagactgtcataatactgttttcc-aagtagatggaac--tatataccattttacattccc----accggcagtgatgagagtttcagtc
s panTro5.chr15              63501896 97 +  83230942 agctttaatttttaaagagactgtcataatactgttttcc-aagtagatggaac--tata--ccattttacattccc----accggcagtgatgagagtttcagtc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459034 97 +  99763055 agctttaatttttaaagagactgtcataatactgttttcc-aagtagatggaac--tata--ccattttacattccc----accggcagtgatgagagtttcagtc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        59188 99 -   1709092 agctttaatttttaaagagactgtcataatactgttttcc-aagtagatggaac--tatataccattttacattccc----accggcagtgatgagagtttcagtc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17210998 97 - 121039945 agctttaatttttaaagagactgtcataatactgttttcc-aagtagatggaac--taca--ccattttacattccc----accagcagtgatgagagtttcagtc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60899535 95 + 169600520 agctttaatttttaaagagactgccataatact-ttttcc-aagtagatggaac--tata--ccattttatcttccc----accagcagt-atgagagtttcagtc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108426271 95 - 171882078 agctttaatttttaaagagactgccataatact-ttttcc-aagtagatggaac--tata--ccattttaccttccc----accagcagt-atgagagtttcagtc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37029 95 -   2311642 agctttaatttttaaagagactgccataatact-ttttcc-aagtagatggaac--tata--ccattttaccttccc----accagcagt-atgagagtttcagtc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        34905 95 -   1987038 agctttaatttttaaagagactgccataatact-ttttcc-aagtagatggaac--tata--ccattttaccttccc----accagcagt-atgagagtttcagtc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21115449 97 -  24206276 agctttaatttttaaagagactgccataatact-ttttcc-aagtagatggaactatata--ccattttaccttccc----accagcagt-atgagagtttcagtc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        30610 95 -   1397330 agctttaatttttaaagagactgccataatact-ttttcc-aagtagatggaat--tata--ccattttaccttccc----atcagcagt-atgagagtttcagtc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        53945 97 -   1784207 agctttaatttttaaagagactgccataatactgttttcc-aagtagatggaac--tata--ccattttacattccc----accagcagtgatgagagtttcagtg
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22251759 97 + 158406734 atctttaatttttaaagagactgtcataatactgttttccaaagtagatgt-ac--tata--ccattttacattccc----accagcagtgatgagagtttcagtc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50487433 94 +  54856640 atctttaatttttaaagagactgtcataa---tgttttccaaagtagatgt-ac--tata--ccattttacattccc----accagcagtaatgaaagtttcagtc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       630390 97 -   2910086 atctttaatttttaaagagactgtcataatactgttttccaaagtagatgt-ac--tata--ccattttacattccc----accagcagtaatgaaagtttcagtc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40658780 97 +  42888418 atctttaatttttaaagagactgtcataatactgttttccaaagtagatgt-ac--tata--ccattttacattccc----accagcagttgtaagagtttcagtc
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             644851 90 -  36342412 accttcaactttttaagaagctgtcata---ctgttttct-aagcaga--------tata--ccatttcacattccctgatatcagcagtaac--aggttacagtc
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54421027 88 +  91889043 acccttgatttttaaagacatggtcaca---ctggtttca-tagggga--------cata--ccatgttacattcct----actagcgctgaagaggacttctatc
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1815238 74 +   3943991 --------tttttaaagaaacag-------actgtttcca-aagcagt--------tgta--ccatttcacattctc----accaataatgatgagaatt--aatc
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113282116 189 + 116334831 I
e proCoq1.NW_012142813v1        27213 448 +     80520 I
e mm10.chr7                  81363797 249 + 145441459 I

a score=71969.000000
s hg38.chr15_KI270850v1_alt    348621 5 +    430880 cctct
s panTro5.chr15              63501993 5 +  83230942 cctct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459131 5 +  99763055 cctct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        59287 5 -   1709092 cctct
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211095 5 - 121039945 cctct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60899630 5 + 169600520 cctct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108426366 5 - 171882078 cctct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37124 5 -   2311642 cctct
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35000 5 -   1987038 cctct
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21115546 5 -  24206276 cctct
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        30705 5 -   1397330 cctct
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54042 5 -   1784207 cctct
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22251856 5 + 158406734 tctct
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50487527 5 +  54856640 tctct
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       630487 5 -   2910086 tctct
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40658877 5 +  42888418 tctct
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             644941 5 -  36342412 cttcc
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81364046 5 + 145441459 ccttt
i mm10.chr7                 I 249 C 0
s canFam3.chr3               54421115 5 +  91889043 cctcc
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1815312 5 +   3943991 cctcc
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113282116 189 + 116334831 I
e proCoq1.NW_012142813v1        27213 448 +     80520 I

a score=1351728.000000
s hg38.chr15_KI270850v1_alt    348626 119 +    430880 acaacctggccaacac-ctggtt--tggtcaatctttttatatctagccagtctaatatgtatgtaTGTT----GTGGGATGTGGGTGGGGTGGAGCCACAGCACATCCAGCAAGGAGTTAGTTTA
s panTro5.chr15              63501998 119 +  83230942 acaacctggccaacac-ctggtt--tgatcaatctttttatatctagccagtctaatatgtatgtaTGTT----GTGGGATGTGGGTGGGGTGGAGCCACAGCACATCCAGCAAGGAGTTAGTTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459136 119 +  99763055 acaacctggccaacac-ctggtt--tgatcaatctttttatatctagccagtctaatatgtatgtaTGTT----GTGGGATGTGGGTGGGGTGGAGCCACAGCACATCCAGCAAGGAGTTAGTTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        59292 119 -   1709092 acaacctggccaacac-ctggtt--tggtcaatctttttatatctagccagtctaatatgtatgtaTGTT----GTGGGATGTGGGTGGGGTGGAGCCACAGCACATCCAGCAAGGAGTTAGTTTA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211100 119 - 121039945 acaacctggccaacac-ctggtt--tggtcaatcttcttatatctagccagtctaatatgtatgtaTGTT----GTGGGGTGTGGGTAGGGTGGAGCCACATCACATCCAGCAAGGAGTTAGTTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60899635 115 + 169600520 acaacctggccaacac-ctggtt--tggtcagtctttttatatctagccagtctaa----tatgtatgtT----GAGGGATGTGGGTGGGGTAGAGCCACATCACATCCACCAAGGAGTTAGTTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108426371 115 - 171882078 acaacctggccaacac-ctggtt--tggtcagtctttttatatctagccagtctaa----tatgtatgtt----gtgggatGTGGGTGGGGTAGAGCCACATCACATCCACCAAGGAGTTAGTTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37129 113 -   2311642 acaacctggccaacac-ctggtt--tggtcagtc--tttatatctagccagtctaa----tatgtatgtt----gtgggatGTGGGTGGGGTAGAGCCACATCACATCCACCAAGGAGTTAGTTTA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35005 115 -   1987038 acaacctggccaacac-ctggtt--tggtcagtctttttatatctagccagtctaa----tatgtatgtt----gtgggatGTGGGTGGGGTAGAGCCACATCACATCCACCAAGGAGTTAGTTTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21115551 115 -  24206276 acaacctggccaacac-ctgatt--tggtcagtctttttatatctagccagtctaa----tctgtatgtt----gtaggatGTGGGTGGGGTAGAGCCACATCACATCCACCAAGGAGTTTGTTTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        30710 115 -   1397330 acaacctggccaacac-ctggtt--tggtcagtctttttatatctagccagtctaa----tatgtatgtt----gtgggatGTGGGTGGGGTAGAGCCACATCACATCCACCAAGGAGTTAGTTTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54047 115 -   1784207 acaacctggccaacac-ctcgtt--tggtcagtctttttatatctagccagtctaa----tatgtatgtt----gtgggatGTGGGTGGGGTGGAGCCACATCACATCCACCAAGGAGTTAATTTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22251861 111 + 158406734 acaaccaggccaacac-ctggtt--tggtcagtctttttgtttctagctagccgta----tacg----tt----gtgggatgCAGGTAGGGTAGAGCCACACCACATCCAGCAAGGAGTTAGTTTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50487532 115 +  54856640 acaaccgggtcaacac-ctggtt--tggtcagtctttttgtttctagctagtcgta----tatgcatctt----gtgggatGCAGGTAGGGTAGAGTCACACCACATCCAGCAAGGAGTTGCTTTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       630492 115 -   2910086 acaaccgggccaccac-ctggtt--tggtcagtctttttgtttctagctagtcgta----tatggatgtT----GTGGGATGCAGGTAGGGTAGAGCCACACCACATCCAGCAAGGAGTTAGTTTA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40658882 115 +  42888418 acaaccgggccaacac-ctggtt--tggtcagtctttttgtttctagctagttgta----tatgcatgtt----gtgggatGCAGGTAGGGTGGAGCCACACCACAACCAGCAAGGAGTTAGTTTA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113282305 112 + 116334831 acaacctggctaatac-ctggta--tagtcaatctttttaattctagccagtctaa----tatgtatgt-----gggggGTATGTGTGG--TGAAGCCATACCATATCCAGCAAGGAGTTAGTTTA
i micMur3.chr9              I 189 I 127
s otoGar3.GL873530             644946 117 -  36342412 acaacctggccaatac-ctggta--ggactggtc-ttctaattcctgccagtctaa--tgtatgtatGTG--TAGAGGGGTTGGGGTGGGATGAAG-CATACTACATCCAACAAGGAGTTAGTTTA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81364051 103 + 145441459 gccactgagacatcgcaccggTTTGTGGTTACTTTTTT-----------ATTTTAG----GATGTATATTATCTATGGGGCTCAGG-------GAGTCA-AACATATCCACAAAGGAGTTAGTTTA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54421120 110 +  91889043 acatcat-gccaacac-ttgcta--tagtccgtctttttaatcccagccagtctaa----tatgcgt-------gTGTCCTGGGGGTGGGGGAG-TCTATACCACCTACAGCAAGGAATCTGTTCA
i canFam3.chr3              C 0 I 4
s dasNov3.JH570731            1815317  81 +   3943991 acatcctcaccaatac-ctttta--tggtcagtcattc---atttcaccagcctaa------------------ctggg--------------------tactgtaTCCAGCAAGGGCTGAATGA-
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        27213 448 +     80520 I

a score=246493.000000
s hg38.chr15_KI270850v1_alt    348745 22 +    430880 GCATTTTGTTTTTCAAGGAAAC
s panTro5.chr15              63502117 22 +  83230942 GCATTTTGTTTTTCAAGGAAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459255 22 +  99763055 GCATTTTGTTTTTCAAGGAAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        59411 22 -   1709092 GCATTTTGTTTTTCAAGGAAAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211219 22 - 121039945 GCATTTTGTTTTTCAAGGAAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60899750 22 + 169600520 GCATTTTGCTTTTCAAGGAAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108426486 22 - 171882078 GCATTTTGCTTTTCAAGGAAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37242 22 -   2311642 GCATTTTGCTTTTCAAGGAAAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35120 22 -   1987038 GCATTTTGCTTTTCAAGGAAAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21115666 22 -  24206276 GCATTTTGCTTTTCAAGGAAAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        30825 22 -   1397330 GCATTTTGCTTTTCAAGGAAAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54162 22 -   1784207 GCATTTTGCTTTTCAAGGAAAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22251972 21 + 158406734 GCATTTTT-TTTTCAAGGAAAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50487647 21 +  54856640 GCATTTTG-TTTTCAAGTAAAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       630607 21 -   2910086 GCATTCTG-TTTTCAAGTAAAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40658997 21 +  42888418 GCATTTTG-TTTTCAAGGAAAC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             645063 22 -  36342412 CTACTTTGTTTTCAAAGAAAAC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81364154 22 + 145441459 TTATTTTGCTTTTCAAAGAAAT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54421234 22 +  91889043 TTACATTGTTTTTTAAGAAAAC
i canFam3.chr3              I 4 I 530
s dasNov3.JH570731            1815398 13 +   3943991 ATATTTCCTTATT---------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113282417 127 + 116334831 I
e proCoq1.NW_012142813v1        27213 448 +     80520 I

a score=1216178.000000
s hg38.chr15_KI270850v1_alt    348767 101 +    430880 ATTC-CTAACTTTGAAATTGCCTTTTGAA-GCAG--TTTTCAAAGCTCTAAAATTTAACTGTATGCTAAAACTAAGTGTCTCAAAATGCTTGGAT--TGATAACCAT
s panTro5.chr15              63502139 101 +  83230942 ATTC-CTAACTTTGAAATTGCCTTTTGAA-GCAG--TTTTCAAAGCTCTAACATTTAACTGTATGCTAAAACTAAGTGTCTCAAAATGCTTGGAT--TGATAACCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459277 101 +  99763055 ATTC-CTAACTTTGAAATTGCCTTTTGAA-GCAG--TTTTCAAAGCTCTAACATTTAACTGTATGCTAAAACTAAGTGTCTCAAAATGCTTGGAT--TGATAACCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        59433 101 -   1709092 ATTC-CTAACTTTGAAATTGCCTTTTGAA-GCAG--TTTTCAAAGCTCTAACATTTAACTGTATGCTAAAACTAAGTGTCTCAAAATGCTTGGAT--TGATAACCAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211241 101 - 121039945 AGTC-CTAACTTTGAAATTGCCTTTTGAA-GCAG--TTTTCAAAGCTCTAACATTTAACTGTATGCTAAAACTAAGTGTCTCAAAATGCTTGGAT--TGATAACCAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60899772 101 + 169600520 ATTC-CTAACTTTGAAATTGCCTTTTGAA-GCAG--TTTTCAAAGCTCTAGCATTTAACTGTATGCTAAAACTAAGTGTCTCAAAATGCTTGGAT--TGATAACCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108426508 101 - 171882078 ATTC-CTAACTTTGAAATTGCCTTTTGAA-GCAG--TTTTCAAAGCTCTAGCATTTAACTGTATGCTAAAACTAAGTGTCTCAAAATGCTTGGAT--TGATAACCAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37264 101 -   2311642 ATTC-CTAACTTTGAAATTGCCTTTTGAA-GCAG--TTTTCAAAGCTCTAGCATTTAACTGTATGCTAAAACTAAGTGTCTCAAAATGCTTGGAT--TGATAACCAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35142 101 -   1987038 ATTC-CTAACTTTGAAATTGCCTTTTGAA-GCAG--TTTTCAAAGCTCTAGCATTTAACTGTATGCTAAAACTAAGTGTCTCAAAATGCTTGGAT--TGATAACCAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21115688 100 -  24206276 ATTC-CTAACTTTGAAATTGCCTTTTGAA-GCAG--TTTTCAAAGCTCTAGCATTTAACTGTATGCTAAAACTAAGTGTCTCAAAATGC-TGGAT--TGGTAACCAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        30847 101 -   1397330 ATTC-CTAACTTTGAAATTGCCTTTTGAA-GCAG--TTTTCAAAGCTCTAGCATTTAACTGTATGCTAAAACTAAGTGTCTCAAAATGCTTGGAT--TGATAACCAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54184 101 -   1784207 ATTC-CTAACTTTGAAATTGCCTTTTGAA-GCAG--TTTTCAAAGCTCTAGCATTTAACTGTATGCTAAAACTAAGTGTCTCAAAATGCTTGGAT--TGATAACCAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22251993 103 + 158406734 ATTC-GTAACTTTGAAATTGACTTTTGAA-GCAG--TTTTCAAAGCTCTAGCATTTAACTGTATGCTGAAACTAAGTGTCTCAAAATGCTTGGGTTCTGATAACCAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50487668 103 +  54856640 ATTC-CTAACTTTGAAATTGCCGTTTGAA-GCAG--TTTTCAAAGCTCTAGCATTTAACTGTATGCTGGAACTAAGGGTCTCAAAATGCTTGGATTCTGATAACCAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       630628 103 -   2910086 ATTC-CTAACTTTGAAACTGCCTTTTGAA-GCAG--TTTTCAAAGCTCTAGCATTTAACTGTATGCTGAAACTAAGTGTCTCAAAATGCTTGGATTCTGATAACCAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40659018 103 +  42888418 ATTC-CTAACTTTGAAATTGCCTTTTGAA-GCAG--TTTTCAAAGCTCTAGCATTTAACTGTATGCTGAAACTAAGTGTCTCAAAATGCTTGGATTCTGATAACCAT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             645085 100 -  36342412 ACTC-TTTACCTGG-----GCCTTTCAAA-CCAGGTTTTCAAAAGCACTAGCACTTAACTGTTTGCTAAAACTAAGTGTCTCAAAATGCTTGGATTCTGACAGCCAC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81364176  82 + 145441459 AGTCTTTTACCCAG-----GCCTTTCAAA-GTGG--TTTTC-CAGTACTAGCACTTAACTGCATGCTGGAACTAAACGTCTCAACACCCAG----------------
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1815411  92 +   3943991 --------ATTTTGCCTTGGCCTTTTCAAGGCAG--TTTCCAAAGCACAAGCACTAAACTATATTCTAGAAC-----ATTTCTCAATGCTTGGATTCCGACACCCAT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113282417 127 + 116334831 I
e proCoq1.NW_012142813v1        27213 448 +     80520 I
e canFam3.chr3               54421256 530 +  91889043 I

a score=427539.000000
s hg38.chr15_KI270850v1_alt    348868 30 +    430880 CAGAAATAATCCCTGACAAACTTCTCAAAT
s panTro5.chr15              63502240 30 +  83230942 CAGAAATAATCCCTGACAAACTTCTCAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459378 30 +  99763055 CAGAAATAATCCCTGACAAACTTCTCAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        59534 30 -   1709092 CAGAAATAATCCCTGACAAACTTCTCAAAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211342 30 - 121039945 CAGAAATAATCCTTGACAAACTTCTCAAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60899873 30 + 169600520 CAGAAATAATCCTTGACAAACTTCTCAAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108426609 30 - 171882078 CAGAAATAATCCTTGACAAACTTCTCAAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37365 30 -   2311642 CAGAAATAATCCTTGACAAACTTCTCAAAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35243 30 -   1987038 CAGAAATAATCCTTGACAAACTTCTCAAAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21115788 27 -  24206276 CACAAATAATCCTTGACAAACTTCTCA---
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        30948 30 -   1397330 CAGAAATAATCCTTGACAAACTTCTCAAAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54285 30 -   1784207 CAGAAATAATCCTTGACAAACTTCTCAAAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252096 30 + 158406734 CAGAAATAATCTTTGACAAACTTCTCAAAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50487771 30 +  54856640 CAGAAATAATCTTTGACAAACTTCTCAAAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       630731 30 -   2910086 TAGAAATAATCTTTGACAAACTTCTCAAAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40659121 30 +  42888418 CAGAAATAATCTTTGACAAACTTCTCGAAT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113282544 30 + 116334831 CAGAAATAATCCTTGACAAACTTCTCAAAT
i micMur3.chr9              I 127 C 0
s otoGar3.GL873530             645185 29 -  36342412 CAGAAATAATCCTGAAC-AACTTCTCAAAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81364258 28 + 145441459 CACAAACACTCCTTGATAAGCTTCCCAG--
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1815503 29 +   3943991 CAGAAATAATCCTTGAC-AGTATCTCAAAT
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        27213 448 +     80520 I
e canFam3.chr3               54421256 530 +  91889043 I

a score=44487.000000
s hg38.chr15_KI270850v1_alt    348898 3 +    430880 AAT
s panTro5.chr15              63502270 3 +  83230942 AAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459408 3 +  99763055 AAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        59564 3 -   1709092 AAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211372 3 - 121039945 AAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60899903 3 + 169600520 AAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108426639 3 - 171882078 AAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37395 3 -   2311642 AAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35273 3 -   1987038 AAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21115815 3 -  24206276 AAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        30978 3 -   1397330 AAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54315 3 -   1784207 AAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252126 3 + 158406734 AAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50487801 3 +  54856640 AAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       630761 3 -   2910086 AAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40659151 3 +  42888418 AAT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113282574 3 + 116334831 AAT
i micMur3.chr9              C 0 C 0
s otoGar3.GL873530             645214 3 -  36342412 AAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81364286 3 + 145441459 GAT
i mm10.chr7                 C 0 C 0
e proCoq1.NW_012142813v1        27213 448 +     80520 I
e dasNov3.JH570731            1815532 0 +   3943991 C
e canFam3.chr3               54421256 530 +  91889043 I

a score=46408.000000
s hg38.chr15_KI270850v1_alt    348901 4 +    430880 CCTT
s panTro5.chr15              63502273 4 +  83230942 CCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459411 4 +  99763055 CCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        59567 4 -   1709092 CCTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211375 4 - 121039945 CCTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60899906 4 + 169600520 CCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108426642 4 - 171882078 CCTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37398 4 -   2311642 CCTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35276 4 -   1987038 CCTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21115818 4 -  24206276 CCTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        30981 4 -   1397330 CCTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54318 4 -   1784207 CCTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252129 4 + 158406734 CATT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50487804 4 +  54856640 CATT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       630764 4 -   2910086 CATT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40659154 4 +  42888418 CATT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113282577 4 + 116334831 CCTT
i micMur3.chr9              C 0 I 46
s mm10.chr7                  81364289 4 + 145441459 CCTT
i mm10.chr7                 C 0 I 262
e proCoq1.NW_012142813v1        27213 448 +     80520 I
e dasNov3.JH570731            1815532 0 +   3943991 C
e canFam3.chr3               54421256 530 +  91889043 I
e otoGar3.GL873530             645217 0 -  36342412 C

a score=2443249.000000
s hg38.chr15_KI270850v1_alt    348905 247 +    430880 Tggtcgggtgtggtggctcacgcctgtaatcccagcactttgggaggttgagacaggtagatcacctgaggtcaggagtttgaaaccagcctgcctaacatggcgaaaccccgtctctactgaaaatacaaaaattagccaggcgtgaaagtgcacgcctgtaatcccagctactcgggaagctgaggcacaagaattgcttgaacccaggaggc-agaggttgcagtgagccgagattgcgccacta
s panTro5.chr15              63502277 247 +  83230942 Tggtcgggtgtggtggctcacgcctgtaatcccagcactttgggaggttgagacaggtagatcacctgaggtcaggagtttgaaaccagcctgcctaacatggcgaaaccccgtctctactgaaaatacaaaaattagccaagcgtgaaagtgcacgcctgtaatcccagctactcgggaagctgaggcacaagaattgcctgaacccaggaggc-agaagttgcagtgagccgagattgcgccacta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459415 247 +  99763055 Tggtcgggtgtggtggctcacgcctgtaatcccagcactttgggaggttgagacaggtagatcacctgaggtcaggagtttgaaaccagcctgcctaacatggcaaaaccccgtctctactgaaaatacaaaaattagccaagcgtgaaagtgcacgcctgtaatcccagctactcgggaagctgaggcacaagaattgcctgaacccaggaggc-agaagttgcagtgagccgagattgcgccacta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        59571 247 -   1709092 Tggtcgggtgtggtggctcatgcctgtaatcccatcactttgggaggttgagacaggtagatcacctgaggtcaggagtttgaaaccagcctgcctaacatggcgaaaccccgtctctactgaaaatacaaaaatttgccaggcgtgaaagtgcacgcctgtaatcccagctactcgagaagctgagacacaagaattgcttgaacccaggaggc-agaggttgcagtgagccgagattgcaccacta
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211379 247 - 121039945 Tggtcagttgtggtggctcacgactgtaatcccagcactttgggaggttgaggcaggtagatcacctgaggtcaggagtttgaaaccagcctgcctaacatggcgaaaccctgtctctgctgaaaacacaaaaattagccaggcgtggaagtgcatgcctgtaatcccagctactcgggaagctgaggcacaagaattgcttgaacccagcaggc-agaggctgcagtgagccgagattgcgccacta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60899910 247 + 169600520 Tggccgggtgtggtagctcactcctgcaatcccagaactttgggaggctgaggcaggtggatcacctgaggtcaggagtttgaaaccagcctgcctaacatggcgaaaccccatctctactaaaaatacaaaaattagccaggcgtggtggtgcacgcctataatcccagctgcttgggaagctgaggcacaaggattgtttgaacccaggaggc-agaggttgcagtgagccgagattgtaccactg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108426646 247 - 171882078 Tggccgggtgtggtagctcactcctgcaatcccagaactttgggaggctgaggcaggtggatcacctgaggtcaggagtttgaaaccagcctgcctaacatggcgaaaccccatctctactaaaaatacaaaaattagccaggcgtggtgatgcacgcctataatcccagctgcttgggaagctgaggcacaaggattgcttgaacccaggaggc-agaggttgcagtgagccgagattgtaccactg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37402 247 -   2311642 Tggccgggtgtggtagctcactcctgtaatctcagaactttgggaggctgaggcaggtggatcacctgaggtcaggagtttgaaaccagcctgcctaacatggcgaaaccccatctctactaaaaatacaaaaattagccaggcgtggtggtgcacgcctataatcccagctgcttgggaagctgaggcacaaggattgcttgaacccaggaggc-agaggctgcagtgagccgagattgtaccactg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35280 247 -   1987038 Tggccgggtgtggtggctcactcctgtaatcccagaactttgggaggctgaggcagttggatcacctgaggtcaggagtttgaaaccagcctgcctaacatggcgaaactccatctctactaaaaatacaaaaattagccaggcgtggtggtgcacgcctataatcccagctgcttgggaagctgaggcccaaggattgcttgaacccaggaggc-agaggttgcagtgagccgagattgtaccactg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21115822 247 -  24206276 Tggccgggtgtggtggctcactcctgtaatcccagaactttgggaggctgaggcaggtggctcacctgaggtcaggagtttgaaaccagcctacccaacatggcgaaaccccatctctactgaaaatacaaaaattagccaggcatggtggtgcacgcctataatcccagctgctcgggaagctgaggcacaaggattgcttgaacccaggaggc-agaggttgcagtgagctgagattgtaccactg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        30985 247 -   1397330 Tggccgggtgtggtggctcactcctgtaatcccagaactttgggaggctgaggcagttggatcacctgaggtcaggagtttgaaaccagcctgcctaacatggcgaaactccatctctactaaaaatacaaaaattagccaggcgtggtggtgcacgcctataatcccagctgcttgggaagctgaggcccaaggattgcttgaacccaggaggc-agaggttgcagtgagccgagattgtaccactg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54322 247 -   1784207 Tggctgggtgtggtggcccactcctgtaatcccagaactttgggaggctgaggcaggtggatcacctgaggtcaggagtttgaaaccagcctgcctaacatggcgaaaccccatctctactaaaaatacaaaaattagccaggcgtggtggtgcacgcctataatcccagctgctcgggaagctgaggcacaaggattgcttgaacccaggaggc-agaggttgcagtgagccgagattgtaccactg
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252133 248 + 158406734 Gggccaggcatggtggctcacacctgtaatcccagcactttgggaggctgaggtgggtgaatcacctgaggtcaggagtttgaaaccagcctggctaacatggcgaaaccctgtctctaccaaacatacaaaaattagccaggcgtggtgacacacacctataatcccagctactcaggcagctgaggcacaggaattgcttgaacccagaaggcaagagattgcagtgagccgagattgcaccactg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50487808 247 +  54856640 Gggtcaggcatggtggctcacacctgtaatcccagtactttgggaggctgaggtgagtggatcacctgaggtcaggagtttgtaactagtctggctaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggcgtggtggcacacacctataatcccagctactcaggaagctgaggcacgagaattgcttgaacccggaaggc-agagattacagtgagccgagatcgcaccattg
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       630768 247 -   2910086 Gggccaggcatggtggctcacacatgtaatcccagcactttgggaggctgaggtcggtgtatcacctgaggtcaggagtttgaaaccagcctggctaacatggcgaaaccctgtctctactaaaaatacaaaaattagccaggcgtggtggtacacacctataatcccagctacttaggaagctgaggcacgagaattgcttgaaccctgaaggc-agagattgcagtgagccaagatcgcaccactg
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40659158 247 +  42888418 Gggccaggcatggtggctcacacctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggtcaggagtttgaaaccagcctggctaacatggcgaaaccctgtctctactaaaaatacaaaaatcagccaggcatggtggcgcacacctataatcccagctactcaggaagctgaggcacgagaattgcttgaacccggaaggc-agagattgcagtgagccaagatcgcaccactg
i aotNan1.NW_018505940v1    C 0 C 0
e micMur3.chr9              113282581  46 + 116334831 I
e proCoq1.NW_012142813v1        27213 448 +     80520 I
e mm10.chr7                  81364293 262 + 145441459 I
e dasNov3.JH570731            1815532   0 +   3943991 C
e canFam3.chr3               54421256 530 +  91889043 I
e otoGar3.GL873530             645217   0 -  36342412 C

a score=315806.000000
s hg38.chr15_KI270850v1_alt    349152 45 +    430880 cactccagcctgggtgatagagcaagactctg----------------------aaaaaaaaaaGTT
s panTro5.chr15              63502524 45 +  83230942 cactccagcctgggcgatagagcaagactctg----------------------aaaaaaaaaaGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459662 45 +  99763055 cactccagcctgggcgatagagcaagactctg----------------------aaaaaaaaaaGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        59818 47 -   1709092 cactccagcctgggcgatagagcaagactctg--------------------aaaaaaaaaaaaGTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211626 58 - 121039945 cactccagcctgggagacagagcaagactctg-tcta-------aaaaa-aaaaaaaaaaaaaaGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900157 66 + 169600520 cactccagcctgggcaacagagcaagactcttgtcta-aaaaataaaaataaaaataaaaataaaTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108426893 66 - 171882078 cactccagcctgggcaacagagcaagactcTTGTCTA-aaaaataaaaataaaaataaaaataaaTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37649 60 -   2311642 cactccagcctgggcaacagagcaagactcttgtcta-------aaaaataaaaataaaaataaaTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35527 60 -   1987038 cactccagcctgggcaacagagcaagactcttgtcta-------aaaaataaaaataaaaataaaTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116069 60 -  24206276 cactccagcctgggcaacagagcaagactcttgtcta-------aaaaataaaaataaaaataaaTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        31232 60 -   1397330 cactccagcctgggcaacagagcaagactcttgtcta-------aaaaataaaaataaaaataaaTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54569 54 -   1784207 cactccagcctgggcaacagagcaagactcttgtcta-------------aaaaataaaaataaaTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252381 55 + 158406734 cactccagcctgggagacaaagcaagaccctgttt------------aaaaaaaaaaaaaaaaaaaT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488055 51 +  54856640 cactccagcctgggagacagagcaaga--ctgtt--------------aaaaaaaaaaaaaaaaaGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631015 60 -   2910086 cactccagcctgggagacagatcaaga--ctGTTTTC-----aaaaaaaaaaaaaaaaaaaaaaaaa
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40659405 67 +  42888418 cactccagcctgggagacagagcaagactctgtttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaT
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1815532  5 +   3943991 CACTC--------------------------------------------------------------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113282581 46 + 116334831 I
e proCoq1.NW_012142813v1        27213 448 +     80520 I
e mm10.chr7                  81364293 262 + 145441459 I
e canFam3.chr3               54421256 530 +  91889043 I
e otoGar3.GL873530             645217  0 -  36342412 C

a score=20771.000000
s hg38.chr15_KI270850v1_alt    349197 2 +    430880 CC
s panTro5.chr15              63502569 2 +  83230942 CC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459707 2 +  99763055 CC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        59865 2 -   1709092 CC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211684 2 - 121039945 CC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900223 2 + 169600520 CC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108426959 2 - 171882078 CC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37709 2 -   2311642 CC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35587 2 -   1987038 CC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116129 2 -  24206276 CC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        31292 2 -   1397330 CC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54623 2 -   1784207 CC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252436 2 + 158406734 CC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488106 2 +  54856640 CA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631075 2 -   2910086 CA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40659472 2 +  42888418 CC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             645217 2 -  36342412 CC
i otoGar3.GL873530          C 0 C 0
e micMur3.chr9              113282581 46 + 116334831 I
e proCoq1.NW_012142813v1        27213 448 +     80520 I
e mm10.chr7                  81364293 262 + 145441459 I
e dasNov3.JH570731            1815537 0 +   3943991 C
e canFam3.chr3               54421256 530 +  91889043 I

a score=570793.000000
s hg38.chr15_KI270850v1_alt    349199 47 +    430880 TTGACAAACTCCTGC-CTGATAGAAATCCAAAATCAAAGCCTGTAGAG
s panTro5.chr15              63502571 47 +  83230942 TTGACAAACTCCTGC-CTGATAGAAATCCAAAATCAAAGCCTGTAGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459709 47 +  99763055 TTGACAAACTCCTGC-CTGATAGAAATCCAAAATCAAAGCCTGTAGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        59867 47 -   1709092 TTGAGAAACTCCTAC-CTGATAGAAATCCAAAATCAAAGCCTGTAGAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211686 47 - 121039945 TTGACAAACTCCTGC-CTGAAAGAAATCCAAAATCAAAGCCTGCAGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900225 47 + 169600520 TTGACAAACTCCTGC-CTGAAAGAAATTCAAAATCAAAGTCTGTAGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108426961 47 - 171882078 TTGACAAACTCCTGC-CTGAAAGAAATTCAAAATCAAAGTCTGTAGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37711 47 -   2311642 TTGACAAACTCCTGC-CTGAAAGAAATTCAAAATCAAAGTCTGTAGAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35589 47 -   1987038 TTGACAAACTCCTGC-CTGAAAGAAATTCAAAATCAAAGTCTGTAGAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116131 47 -  24206276 TTGACAAACTCCTGC-CTGAAAGAAATCCAAAATCAAAGTCTGTAGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        31294 47 -   1397330 TTGACAAACTCCTGC-CTGAAAGAAATTCAAAATCAAAGTCTGTAGAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54625 47 -   1784207 TTGACAAACTCCTGC-CTGAAAGAAATCCAAAATCAAAGTCTGTAGAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252438 47 + 158406734 TTGACAAATTCCTAC-CTGAAAGAAATCCAAAAGCAAAGCCTGTAGAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488108 47 +  54856640 TTGACAAACTCCTGC-CTGAAAGAAATCCAAAAGCAAAGCCTGTAGAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631077 47 -   2910086 TTGACAAACTCCTGC-CTGAAAGAAATCCAAAAGCAAAGCCTGTAGAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40659474 47 +  42888418 CTGACAAACTCCTAC-CTGAAAGAAATCCAAAAGAAAAGGCTGTAGAG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             645219 47 -  36342412 TTGACAAACCCTTCCTCTTGAAACAATGGAAAGTCAAGGCCCCTGAA-
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54421786 46 +  91889043 TTGACAAGCCCCTGC-CTCACCAAAGCACAAAATCAAAGCCC-TGGAG
i canFam3.chr3              I 530 C 0
s dasNov3.JH570731            1815537 47 +   3943991 TTGAAAAACCCCTGC-CTGAAAAAAATGCAAAATCGAAACCCTCAGAA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113282581 46 + 116334831 I
e proCoq1.NW_012142813v1        27213 448 +     80520 I
e mm10.chr7                  81364293 262 + 145441459 I

a score=14972.000000
s hg38.chr15_KI270850v1_alt    349246 1 +    430880 T
s panTro5.chr15              63502618 1 +  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459756 1 +  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        59914 1 -   1709092 T
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211733 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900272 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427008 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37758 1 -   2311642 T
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35636 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116178 1 -  24206276 T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        31341 1 -   1397330 T
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54672 1 -   1784207 T
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252485 1 + 158406734 T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488155 1 +  54856640 T
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631124 1 -   2910086 T
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40659521 1 +  42888418 T
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113282627 1 + 116334831 T
i micMur3.chr9              I 46 C 0
s otoGar3.GL873530             645266 1 -  36342412 T
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54421832 1 +  91889043 C
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1815584 1 +   3943991 T
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        27213 448 +     80520 I
e mm10.chr7                  81364293 262 + 145441459 I

a score=1166398.000000
s hg38.chr15_KI270850v1_alt    349247 80 +    430880 CCATGCCCTGAGAAGGCAGAATATGTGAAGA-TTTTATTCAAGGTTCCACCCTAA-TGCTGCAAAGCCTGGCAAAGAGGCAC
s panTro5.chr15              63502619 80 +  83230942 CCATGCCCTGAGAAGGCAGAATATGTGAAGA-TTTTATTCAAGGTTCCACCCTAA-TGCTGCAAAGCCTGGCAAAGAGGCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459757 80 +  99763055 CCATGCCCTGAGAAGGCAGAATATGTGAAGA-TTTTATTCAAGGTTCCACCCTAA-TGCTGCAAAGCCTGGCAAAGAGGCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        59915 80 -   1709092 CCATGCCCTGAGAAGGCAGAATATGTGAAGA-TTTTATTCAAGGTTCCACCCTAA-TGCTACAAAGCCTGGCAAAGAGGCAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211734 80 - 121039945 CCATGCCCTGAGAAGGCACAATATGTGAAGA-CTTTATTCAAGGTTCCACCCTAA-TGCTGCAAAGCCTGGCAAAGAGGCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900273 80 + 169600520 CCATGCCCTGAGAAGGCAGAATATGAGAAGA-TTTTATTCAAGGTTCCACCCTAA-TGCTGCAAAGACTGGCAAAGACGCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427009 80 - 171882078 CCATGCCCTGAGAAGGCAGAATATGAGAAGA-TTTTATTCAAGGTTCCACCCTAA-TGCTGCAAAGACTGGCAAAGACGCAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37759 80 -   2311642 CCATGCCCTGAGAAGGCAGAATATGAGAAGA-TTTTATTCAAGGTTCCACCCTAA-TGCTGCAAAGACTGGCAAAGACGCAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35637 80 -   1987038 CCATGCCCTGAGAAGGCAGAATATGAGAAGA-TTTTATTCAAGGTTCCACCCTAA-TGCTGCAAAGACTGGCAAAGAGGCAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116179 80 -  24206276 CCATGCCCTGAGAAGGCAGAATATGCGAAGA-TTTTATTCAAGGTTCCACCCTAA-TGCTACAAAGACTGGCAAAGAGGCAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        31342 80 -   1397330 CCATGCCCTGAGAAGGCAGAATATGAGAAGA-TTTTATTCAAGGTTCCACCCTAA-TGCTGCAAAGACTGGCAAAGAGACAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54673 80 -   1784207 CCATGCCCTAAGAAGGCAGAATATGAGAAGA-TTTTATTCAAGGTTCCACCCTAA-TGCTGCAAAGACTGGCAAAGAGGCAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252486 80 + 158406734 CCATGCCCTCAGAAGGCAGAATATATGAAGA-TTTTATTCAAGGTTTCTCCCTAA-TGCTGAAAAGCCTGGCAAAGAGGTAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488156 80 +  54856640 CCATGCCCTCAGAAGGCAAAATATATGAAGA-TTTTATTCAAGGTTTCTCCCTAA-TGCTGCAAAGCCTGGCGAAGAGGGAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631125 80 -   2910086 CCATGCCCTCAGAAGGCAGAATATATGAAGA-TTTTATTCAATGTTTCTCCCTAA-TGCTGCAAAGCCTGGCAAAAAGGGAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40659522 81 +  42888418 CCATGCCATTAGAAGGCAGAATATATGAAGATTTTTATTCAGCGTTTCTCCCTAA-TGCTGCAAAGCCTGGCAAAGAGGGAT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113282628 79 + 116334831 CCATGCCCTGAGAAGGCAGGAGATGTGAAGA--TTTATTCAAGGCTCCTTCCTGA-TCCTGCAAAGCCTGGTGAAAAGGCAC
i micMur3.chr9              C 0 I 35
s proCoq1.NW_012142813v1        27661 79 +     80520 CCATGCCCTGAGAAGGCAGGAGATGTAAAGA--TTTATTCAAGGCTCCTCCCTGA-TGCTGCAAAGTCTGGCGAAAAGGCAC
i proCoq1.NW_012142813v1    I 448 C 0
s otoGar3.GL873530             645267 75 -  36342412 CCATGCCCC-AGAAGGT---GGATGTGGAGA--TTTATTCAAGGCTCCTCCCTGA-GGCTGCAAAACTTGGTGAATAAGCAC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54421833 79 +  91889043 TCATGCCCTGAGAAGGCTGGAAGTGTGAAGA--TTTATTCAAGGCTCTTTCCTGG-TGCTGCAAAACCTGGCATAAAAGCAC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1815585 78 +   3943991 CCAGGCCCTTGGAAGGCAGGG-GTATGAAGA--TTTATTTAAGACTCCTCCCTGCTTGCAGCAAAATCTAGC-AAGAACCAC
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81364293 262 + 145441459 I

a score=97423.000000
s hg38.chr15_KI270850v1_alt    349327 8 +    430880 TGTG-AAAA
s panTro5.chr15              63502699 8 +  83230942 TGTG-AAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459837 9 +  99763055 TGTGAAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        59995 8 -   1709092 TGTG-AAAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211814 8 - 121039945 TGTG-AAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900353 8 + 169600520 TATG-AAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427089 8 - 171882078 TGTG-AAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37839 8 -   2311642 TGTG-AAAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35717 8 -   1987038 TGTG-AAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116259 8 -  24206276 TGTG-AAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        31422 8 -   1397330 TGTG-AAAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54753 8 -   1784207 TGTG-AAAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252566 8 + 158406734 TGTG-AAAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488236 8 +  54856640 TGTG-AAAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631205 8 -   2910086 TGTG-AAAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40659603 8 +  42888418 TGTG-AAAA
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        27740 8 +     80520 CATG-AAAA
i proCoq1.NW_012142813v1    C 0 I 22
s otoGar3.GL873530             645342 8 -  36342412 TGTG-AAAC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54421912 8 +  91889043 CGTG-AAAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1815663 7 +   3943991 CAAG-GAA-
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113282707 35 + 116334831 I
e mm10.chr7                  81364293 262 + 145441459 I

a score=381179.000000
s hg38.chr15_KI270850v1_alt    349335 36 +    430880 ATCAACAGATCACATGCAC----TGGTCTTAAAAGTGGTA---------------
s panTro5.chr15              63502707 36 +  83230942 ATCAACAGATCACATGCAC----TGGTCTTAAAAGTGGTA---------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459846 36 +  99763055 ATCAACAGATCACATGCAT----TGGTCTTAAAAGTGGTA---------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60003 36 -   1709092 ATCAACAGATCACATGCAT----TGGTCTTAAAAGTGGTA---------------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211822 36 - 121039945 ATCAACAGATCACATGCAT----TGGTCTTAAAAGTGGTA---------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900361 36 + 169600520 ATCAACAGATCATATGCAT----CCATCTTAAAAGTGGTA---------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427097 36 - 171882078 ATCAACAGATCATATGCAT----CCATCTTAAAAGTGGTA---------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37847 36 -   2311642 ATCAACAGATCATATGCAT----CCATCTTAAAAGTGGTA---------------
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35725 36 -   1987038 ATCAACAGATCATATGCAT----CCATCTTAAAAGTGGTA---------------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116267 36 -  24206276 ATCAACAGATCATATGCAT----CCATCTTAAAAGTCGTA---------------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        31430 36 -   1397330 ATCAACAGATCATATGCAT----CCATCTTAAAAGTGGTA---------------
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54761 36 -   1784207 ATCAACAGATCATATGCAT----CGGTCTTAAAAGTGGTA---------------
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252574 35 + 158406734 ATCAACAGATTATATGCAT-----GGTCTTAAAAGTATTA---------------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488244 36 +  54856640 ATCAACAGATTATATGCAC----GGGTCTTAAAAGTGTTA---------------
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631213 36 -   2910086 ATCAACAGATTATATGCAT----GGGTCTTAAAAGTGTTA---------------
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40659611 36 +  42888418 ATCAGCAGATTATATGCAT----GAGTTTTAAAAGTGTTA---------------
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             645350 39 -  36342412 -CCAACAGATCCTCGGCATCATTCAGTCTTAACCATGTTG---------------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54421920 35 +  91889043 -CTAACGGATCATACATAT----TGGCCTTAAAAGTGGTA---------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1815670 51 +   3943991 GTGAAAAGATCATACCTAT----CAGTCTTAAAAGCGATGCCCATGGATGTGGTG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113282707 35 + 116334831 I
e proCoq1.NW_012142813v1        27748 22 +     80520 I
e mm10.chr7                  81364293 262 + 145441459 I

a score=771697.000000
s hg38.chr15_KI270850v1_alt    349371 50 +    430880 CCAATGCCCTGGAGGGCCTCATCCTTTTCCACATTTCACAAAAACAAGTT-
s panTro5.chr15              63502743 50 +  83230942 CCGATGCCCTGGAGGGCCTCATCCTTTTCCACATTTCACAAAAACAAGTT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459882 50 +  99763055 CCGATGCCCTGGAGGGCCTCATCCTTTTCCACATTTCACAAAAACAAGTT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60039 50 -   1709092 CCAATGCCCTGGAGGGCCTCATCCTTTTCCACATTTCACAAAAACAAGTT-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211858 50 - 121039945 CCAATGCCCTGGAGGGCCTCATCCTTTTCCACATTTCACAAAAACAAGTT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900397 50 + 169600520 CCAATGCCCCGGAGGGCCTCATCCTTTTCTACATTTCACAAAAACAAGTT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427133 50 - 171882078 CCAATGCCCCGGAGGGCCTCATCCTTTTCCACATTTCACAAAAACAAGTT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37883 50 -   2311642 CCAATGCCCCAGAGGGCCTCATCCTTTTCCACATTTCACAAAAACAAGTT-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35761 50 -   1987038 CCAATGCCCCGGAGGGCCTCATCCTTTTCCACATTTCACAAAAACAAGTT-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116303 50 -  24206276 CCAATGCCCCGGAGGGCCTCATCCTTTTCCACATTTCACAAAAACAAGTT-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        31466 50 -   1397330 CCAATGCCCCGGAGGGCCTCATCCTTTTCCACATTTCACAAAAACAAGTT-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54797 50 -   1784207 CCAATGCCCCAGAGGGCCTCATCCTTTTCCACATTTCACAAAAACAAGTT-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252609 50 + 158406734 CCAATTACCTGGGGGGCCTCATCCTTTTCCGTATTTCACAAAAACAATTT-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488280 50 +  54856640 CCTATTACCTGGAGGGCCTCATCCTTTTCCATATTTCACAAAAACAAGTT-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631249 50 -   2910086 CCAATTACCTGGAGGGCCTCATCCTTTTCCATATTTCACAAAAACAAGTT-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40659647 50 +  42888418 CCAATTACCTGGAGGGCCTCATCCTTTTCCATATTTCACAAAAACAAGTT-
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113282742 50 + 116334831 CCAATGCCCTAGAGGGCCTTGTCCTTCTCCATATCTTACAAAAACAAGTT-
i micMur3.chr9              I 35 I 329
s proCoq1.NW_012142813v1        27770 50 +     80520 CCAATGCCCTAGAGGGCCTCGTCCTTCTCCGTATTTTACAAAAACAAGTT-
i proCoq1.NW_012142813v1    I 22 I 1
s otoGar3.GL873530             645389 47 -  36342412 CCAGTGCCCCAGAGGGGC--AGCCTTCACTGTATTTCAC-ATAACAAGTT-
i otoGar3.GL873530          C 0 I 1
s canFam3.chr3               54421955 50 +  91889043 CCAATACCCTAGAGGGCCTCATTTTTCTTCACATTTTACAGAATTAAGTG-
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1815721 51 +   3943991 CCAGTGCCCTAGAGGGGTGCCGCCTCCTTCACATTATACAAAAACAAGTTT
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81364293 262 + 145441459 I

a score=574665.000000
s hg38.chr15_KI270850v1_alt    349421 45 +    430880 AGGGTGATGAACAGTGAGGTAACAATTCAAATCACAAAGAACTCT
s panTro5.chr15              63502793 45 +  83230942 AGGGTAATGAACAATGAGGTAACAATTCAAATCACAAAGAACCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459932 45 +  99763055 AGGGTAATGAACAATGAGGTAACAATTCAAATCACAAAGAACCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60089 45 -   1709092 AGGGTGATGAACAGTGAGGTAACAATTCAAATCACAAAGAACCCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211908 45 - 121039945 AGGGTGATGAACAGTGAGGTAACAATTCAAATCACAAAGAACCCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900447 45 + 169600520 AGGGTGATGAACAGTGAGGTAACAATTCAAATCACAAAGAACCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427183 45 - 171882078 AGGGTGATGAACAGTGAGGTAACAATTCAAATCACAAAGAACCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37933 45 -   2311642 AGGGTGATGAACAGTGAGGTAACAATTCAAATCACAAAGAACCCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35811 45 -   1987038 AGGGTGATGAACAGTGAGGTAACAATTCAAATCACAAAGAACCCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116353 45 -  24206276 AGGGTGATGAACAGTGAGGTAACAATTCAAATCACAAAGAACCCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        31516 45 -   1397330 AGGGTGATGAACAGTGAGGTAACAATTCAAATCGCAAAGAACCCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54847 45 -   1784207 AGGGTGATGAACAGTGAGGTAACAATTCAAATCACAGAGAATCCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252659 45 + 158406734 AGGGTGATGAACAACGAGGTAACAATTCAAATCACAAAAAACCTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488330 45 +  54856640 ACGGAGATGAACAATGAGGTAACAATTCAAATCATAAAGAACCTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631299 45 -   2910086 AGGGTGATGAACAATGAGGTAACAATTCAAATCACAAAGAACCTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40659697 45 +  42888418 AGGGTGATGAACAATGAGGTAACAATTCAAATCACAGAGAACCTT
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        27821 44 +     80520 AGGGTGGTGAACAATGACCTAACAA-TCAAATCATAAAGAGCCTT
i proCoq1.NW_012142813v1    I 1 C 0
s otoGar3.GL873530             645437 44 -  36342412 AGGGTGGTGAGCAAAGAGCTAACAA-TAAAATCATACAGAGCCTT
i otoGar3.GL873530          I 1 C 0
s canFam3.chr3               54422006 20 +  91889043 CGGGTGCCAAATAACAAGAT-------------------------
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1815772 44 +   3943991 AGGGTGGTGAACAATGACACAATAG-TCAAATTATGAAGAGTTCT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113282792 329 + 116334831 I
e mm10.chr7                  81364293 262 + 145441459 I

a score=133723.000000
s hg38.chr15_KI270850v1_alt    349466 12 +    430880 GACAACTAGGTT
s panTro5.chr15              63502838 12 +  83230942 GACAACTAGGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459977 12 +  99763055 GACAACTAGGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60134 12 -   1709092 GACAACTAGGTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211953 12 - 121039945 GACAACTAGGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900492 12 + 169600520 GACAACTAAGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427228 12 - 171882078 GACAACCAAGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37978 12 -   2311642 GACAACTAAGTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35856 12 -   1987038 GACAACTAAGTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116398 12 -  24206276 GACAACTAAGTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        31561 12 -   1397330 GACAACTAAGTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54892 12 -   1784207 GACAACTAAGTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252704 11 + 158406734 GACA-CCAGGTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488375 12 +  54856640 TACACCCAGGTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631344 11 -   2910086 GACA-CCAGGTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40659742 12 +  42888418 GACACCCAGGTT
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        27865 12 +     80520 GACAACCAGGTT
i proCoq1.NW_012142813v1    C 0 I 148
s canFam3.chr3               54422026 12 +  91889043 AACAACCAAATC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1815816 12 +   3943991 GAAAACCAGGTT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113282792 329 + 116334831 I
e mm10.chr7                  81364293 262 + 145441459 I
e otoGar3.GL873530             645481  0 -  36342412 C

a score=32989.000000
s hg38.chr15_KI270850v1_alt    349478 4 +    430880 AAAT
s panTro5.chr15              63502850 4 +  83230942 AAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459989 4 +  99763055 AAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60146 4 -   1709092 AAAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211965 4 - 121039945 AAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900504 4 + 169600520 AAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427240 4 - 171882078 AAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37990 4 -   2311642 AAAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35868 4 -   1987038 AAAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116410 4 -  24206276 AAAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        31573 4 -   1397330 AAAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54904 4 -   1784207 ACAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252715 4 + 158406734 AAAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488387 4 +  54856640 AAAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631355 4 -   2910086 AAAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40659754 4 +  42888418 AAAG
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54422038 2 +  91889043 --AT
i canFam3.chr3              C 0 I 50
s dasNov3.JH570731            1815828 4 +   3943991 AAGG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113282792 329 + 116334831 I
e proCoq1.NW_012142813v1        27877 148 +     80520 I
e mm10.chr7                  81364293 262 + 145441459 I
e otoGar3.GL873530             645481 0 -  36342412 C

a score=31471.000000
s hg38.chr15_KI270850v1_alt    349482 4 +    430880 AGT-----T
s panTro5.chr15              63502854 4 +  83230942 AGT-----T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459993 4 +  99763055 AGT-----T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60150 4 -   1709092 AGT-----T
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211969 4 - 121039945 AGT-----T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900508 9 + 169600520 AGTTTTCAt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427244 9 - 171882078 AGTTTTCAt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        37994 9 -   2311642 AGTTTTCAt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35872 9 -   1987038 AGTtttcat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116414 9 -  24206276 AGTtttcat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        31577 9 -   1397330 AGTtttcat
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54908 9 -   1784207 AGTTTTCAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252719 9 + 158406734 AGTTTTTAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488391 9 +  54856640 AGTTTTTAt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631359 9 -   2910086 AGtttttat
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40659758 9 +  42888418 AGtttttat
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1815832 4 +   3943991 AGTT-----
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113282792 329 + 116334831 I
e proCoq1.NW_012142813v1        27877 148 +     80520 I
e mm10.chr7                  81364293 262 + 145441459 I
e canFam3.chr3               54422040 50 +  91889043 I
e otoGar3.GL873530             645481 0 -  36342412 C

a score=1212116.000000
s hg38.chr15_KI270850v1_alt    349486 134 +    430880 TTTATCTTATTGTCAtttg---ttttttttttttttttt--gagacagggcctagttctgttgcccaggctggagtgcagtggctcacttcaacctc-aatcttcct--gggctcaagcgatcttcccacctcagcctctag
s panTro5.chr15              63502858 136 +  83230942 TTTATCTTATTGTCAtttg---tttttttttttttttttttgagacagggcctagttctgttgcccaggctggagtgcagtggctcacttcaacctc-aatcttccc--gggctcaagcgatcttcccacctcagcctctag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80459997 135 +  99763055 TTTATCTTATTGTCAtttg---tttttttgttttttttt-tgagacagggcctagttctgttgcccaggctggagtgcagtggctcacttcaacctc-aatcttccc--gggctcaagcgatcttcccacctcagcctctag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60154 130 -   1709092 TTTATCTTATTGTCAtttg---ttttttttttttt------gagacagggcctagttctgttgcccaggctggagtgcagtggctcacttcaacctc-aatcttcct--gggctcaagcgatcttcccacctcagcctctag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17211973 126 - 121039945 TTTATCTTATTGTCAtttg---ttttttttt----------gagacagggcctagttctgttgcccaggctggagtgcagtggctcacttcaacctc-aatcttcct--gggctcaagcaatcttcccacctcagcctctag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900517 124 + 169600520 tttatcttattgttatttg---ttttttt------------gagacagggcctagttctgttccccaggctggagtgcagtggcttacttcaacctc-aagcttcct--gggctcaagcaatctttccatttcagcctctag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427253 124 - 171882078 tttatcttattgtcatttg---ttttttt------------gagacagggcctagttctgttccccaggctggagtgcagtggcttacttcaacctc-aagcttcct--gggctcaagcaatctttccatctcagcctctag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        38003 124 -   2311642 tttatcttattgtcatttg---ttttttt------------gagacagggcctagttctgttccccaggctggagtgcagtggcttacttcaacctc-aagcttcct--gggctcaagcaatctttccatctcagcctctag
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        35881 124 -   1987038 tttatcttattgtcatttg---ttttttt------------gagacagggcctagttctgttccccaggctggagtgcagtggcttacttcaacctc-aagcttcct--gggctcaagtaatctttccatctcagcctctag
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116423 124 -  24206276 tttatcttattgtcatttg---atttttt------------gagacagggcctaggtctgttccccaggctgaagtgcagtggctcacttcaacctc-aagcttcct--gggctcaagcaatctttccatctcagcctctag
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        31586 124 -   1397330 tttatcttattgtcatttg---ttttttt------------gagacagggcctagttctgttccccaggctggagtgcagtggcttacttcaacctc-aagcttcct--gggctcaagcaatctttccatctcagcctctag
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        54917 124 -   1784207 TTTATCTTATTGTCAtttg---ttttttt------------gagacagagcctagttctgttccccaggctggagtgcagtggctcacttcaacctc-aatcttcct--gggctcaagcaatctttccatctcagcctctag
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252728 125 + 158406734 TTTATCTTATTGTCAtttg---ttttttt------------gagacagggcctagctctgtcacccaggctggagtgcagtggctcacttcaacctcaagtcttcct--gggctcaagtggtcttcccacctcagcctccag
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488400 129 +  54856640 tttatcttattgtcatttgtttttttttt------------gagacagggcctagctctgtcacccaggctggagtgcagtggctcacttcaacttc-agtcttcctgggggctcaagtagtcttcccacctcagcctccag
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631368 124 -   2910086 tttatcttattgtcatttg---ttttttt------------gagacagggtgtagctctgtcacccaggctggagtgcagtggctcacttcaacctc-agtcttcct--gggctcaagtggtcttcctacctccgcctccag
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40659767 122 +  42888418 tttatcttattgtcatttg----cttttt------------gagacagggcctagctctgtcacccaggctggagtgcagtggctca-ttcaacctc-agtcttcct--gggctcaagtggtcttcccacctcagcctccag
i aotNan1.NW_018505940v1    C 0 C 0
e micMur3.chr9              113282792 329 + 116334831 I
e proCoq1.NW_012142813v1        27877 148 +     80520 I
e mm10.chr7                  81364293 262 + 145441459 I
e dasNov3.JH570731            1815836   0 +   3943991 C
e canFam3.chr3               54422040  50 +  91889043 I
e otoGar3.GL873530             645481   0 -  36342412 C

a score=482445.000000
s hg38.chr15_KI270850v1_alt    349620 54 +    430880 aacagctgggactacaggcatgtgatatctaccacatctggctgatttaaaaaa
s panTro5.chr15              63502994 54 +  83230942 aacagctgggactacaggcatgtggtatctaccacatctgcctgatttaaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460132 53 +  99763055 aacagctgggactacaggcatgtggtatctaccacatctgcctgattt-aaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60284 54 -   1709092 aacagctgggactacaggcatgtgatatctaccacatctggctgatttaaaaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17212099 54 - 121039945 aacagctgggactacaggcatgtgatatctaccacatctggctgatttaaaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900641 54 + 169600520 aatagctgggactacaggcatgtaatatctaccacatccggttgattttaaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427377 54 - 171882078 aatagctgggactacaggcatgtaatatctaccacatccggttgattttaaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        38127 54 -   2311642 aatagctgggactacaggcatgtaatatctaccacatccggttgatttttaaaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        36005 54 -   1987038 aatagctgggactacaggcatgtaatatctaccacatccggttgattttaaaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116547 54 -  24206276 aatagctgggactacaggcacgtaatatctaccacatccggttgatttaaaaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        31710 54 -   1397330 aatagctgggactacaggcatgtaatatctaccacatccggttgattttaaaaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        55041 54 -   1784207 aacagctgggactacaggcatgtaatatctaccacatccggttgatttttaaaa
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252853 54 + 158406734 aatagctgggactacagccacatggtacctaccacgtccggctgatttaaaaca
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488529 54 +  54856640 aagagctgggactccagccatgtggtacctaccacatccggctgattaaaaaaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631492 54 -   2910086 aatagctgggactacagccatgtggtacctaccacatccggctgattaaaaaaa
i cebCap1.NW_016107610v1    C 0 I 26
s aotNan1.NW_018505940v1     40659889 54 +  42888418 aatagctgggactacagccatgtggtacctaccacatctggctgattaaaaaaa
i aotNan1.NW_018505940v1    C 0 I 28
s otoGar3.GL873530             645481  9 -  36342412 AACAGCAGG---------------------------------------------
i otoGar3.GL873530          C 0 C 0
e micMur3.chr9              113282792 329 + 116334831 I
e proCoq1.NW_012142813v1        27877 148 +     80520 I
e mm10.chr7                  81364293 262 + 145441459 I
e dasNov3.JH570731            1815836  0 +   3943991 C
e canFam3.chr3               54422040 50 +  91889043 I

a score=13567.000000
s hg38.chr15_KI270850v1_alt    349674 2 +    430880 aa
s panTro5.chr15              63503048 2 +  83230942 aa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460185 2 +  99763055 aa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60338 2 -   1709092 aa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17212153 2 - 121039945 aa
i nomLeu3.chr6              C 0 I 7648
s rheMac8.chr7               60900695 2 + 169600520 aa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427431 2 - 171882078 aa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        38181 2 -   2311642 aa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        36059 2 -   1987038 aa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116601 2 -  24206276 aa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        31764 2 -   1397330 aa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        55095 2 -   1784207 aa
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252907 1 + 158406734 -a
i calJac3.chr6              C 0 I 2
s saiBol1.JH378108           50488583 1 +  54856640 -a
i saiBol1.JH378108          C 0 I 2
e micMur3.chr9              113282792 329 + 116334831 I
e proCoq1.NW_012142813v1        27877 148 +     80520 I
e aotNan1.NW_018505940v1     40659943 28 +  42888418 I
e mm10.chr7                  81364293 262 + 145441459 I
e dasNov3.JH570731            1815836 0 +   3943991 C
e canFam3.chr3               54422040 50 +  91889043 I
e cebCap1.NW_016107610v1       631546 26 -   2910086 I
e otoGar3.GL873530             645490 0 -  36342412 C

a score=117614.000000
s hg38.chr15_KI270850v1_alt    349676 19 +    430880 tttttagtagaggta-gcat
s panTro5.chr15              63503050 19 +  83230942 tttttagtagaggta-gcat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460187 19 +  99763055 tttttagtagaggta-gcat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60340 19 -   1709092 tttttagtagaggta-gcat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17219803 19 - 121039945 tttttagtagaggta-gcat
i nomLeu3.chr6              I 7648 I 4
s rheMac8.chr7               60900697 19 + 169600520 tttttagtagaggta-gggt
i rheMac8.chr7              C 0 I 4
s macFas5.chr7              108427433 19 - 171882078 tttttagtagaggta-gggt
i macFas5.chr7              C 0 I 4
s macNem1.NW_012011945v1        38183 19 -   2311642 tttttagcagaggta-gggt
i macNem1.NW_012011945v1    C 0 I 4
s cerAty1.NW_012002657v1        36061 19 -   1987038 tttttagtagcggta-gggt
i cerAty1.NW_012002657v1    C 0 I 4
s chlSab2.chr29              21116603 20 -  24206276 tttttagtagaggtaggggt
i chlSab2.chr29             C 0 I 4
s manLeu1.NW_012106908v1        31766 19 -   1397330 tttttagtagaggta-gggt
i manLeu1.NW_012106908v1    C 0 I 4
s colAng1.NW_012117110v1        55097 19 -   1784207 tttttagtagaggca-gggt
i colAng1.NW_012117110v1    C 0 I 4
s calJac3.chr6               22252910 19 + 158406734 tttttagtagagaca-ggat
i calJac3.chr6              I 2 I 4
s saiBol1.JH378108           50488586 19 +  54856640 tttttagtagagaca-aggt
i saiBol1.JH378108          I 2 I 4
s otoGar3.GL873530             645490  5 -  36342412 --TTTAG-------------
i otoGar3.GL873530          C 0 C 0
e micMur3.chr9              113282792 329 + 116334831 I
e proCoq1.NW_012142813v1        27877 148 +     80520 I
e aotNan1.NW_018505940v1     40659943 28 +  42888418 I
e mm10.chr7                  81364293 262 + 145441459 I
e dasNov3.JH570731            1815836  0 +   3943991 C
e canFam3.chr3               54422040 50 +  91889043 I
e cebCap1.NW_016107610v1       631546 26 -   2910086 I

a score=20055.000000
s hg38.chr15_KI270850v1_alt    349695 2 +    430880 ct
s panTro5.chr15              63503069 2 +  83230942 ct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460206 2 +  99763055 ct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60359 2 -   1709092 ct
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17219826 2 - 121039945 ct
i nomLeu3.chr6              I 4 C 0
s rheMac8.chr7               60900720 2 + 169600520 ct
i rheMac8.chr7              I 4 C 0
s macFas5.chr7              108427456 2 - 171882078 ct
i macFas5.chr7              I 4 C 0
s macNem1.NW_012011945v1        38206 2 -   2311642 ct
i macNem1.NW_012011945v1    I 4 C 0
s cerAty1.NW_012002657v1        36084 2 -   1987038 ct
i cerAty1.NW_012002657v1    I 4 C 0
s chlSab2.chr29              21116627 2 -  24206276 ct
i chlSab2.chr29             I 4 C 0
s manLeu1.NW_012106908v1        31789 2 -   1397330 ct
i manLeu1.NW_012106908v1    I 4 C 0
s colAng1.NW_012117110v1        55120 2 -   1784207 ct
i colAng1.NW_012117110v1    I 4 C 0
s calJac3.chr6               22252933 2 + 158406734 ct
i calJac3.chr6              I 4 C 0
s saiBol1.JH378108           50488609 2 +  54856640 ct
i saiBol1.JH378108          I 4 C 0
s cebCap1.NW_016107610v1       631572 2 -   2910086 ct
i cebCap1.NW_016107610v1    I 26 C 0
e micMur3.chr9              113282792 329 + 116334831 I
e proCoq1.NW_012142813v1        27877 148 +     80520 I
e aotNan1.NW_018505940v1     40659943 28 +  42888418 I
e mm10.chr7                  81364293 262 + 145441459 I
e dasNov3.JH570731            1815836 0 +   3943991 C
e canFam3.chr3               54422040 50 +  91889043 I
e otoGar3.GL873530             645495 0 -  36342412 C

a score=918177.000000
s hg38.chr15_KI270850v1_alt    349697 99 +    430880 atgttgcccaggctggtctcgaactcctgagctcaagcaatcctcttacctcagcctcacaaactcctaggattacaggcatgagccactgcacccagc
s panTro5.chr15              63503071 99 +  83230942 atgttgcccaggctggtctcgaactcctgagctcaagcaatcctcttacctcagcctcataaagtcctaggattacaggcatgagccactgcacccagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460208 99 +  99763055 atgttgcccaggctggtctcgaactcctgagctcaagcaatcctcttacctcagcctcacaaagtcctaggattacaggcatgagccactgcacccagc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60361 99 -   1709092 atgttgcccaggctggtctcgaactcctgagctcaagcaatcctcttacctcagcctcacaaagtcctaggattacaggcatgagccactgcacccagc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17219828 99 - 121039945 atgttgcccaggctggtctcgaactcctgagctcaagcaatcctcttacctcagcctcacaaagtcctgggattacaggcatgagccactgcacccagc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900722 99 + 169600520 atgttgcccaggctggtctcaaacacctgagctcaagcaatcctcttgtctcagcctcacaaagtcctaggattacaggcatgagccactgcacccagc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427458 99 - 171882078 atgttgcccaggctggtctcaaacacctgagctcaagcaatcctcttgtctcagcctcacaaagtcctaggattacaggcatgagccactgcacccagc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        38208 99 -   2311642 atgttgcccaggctggtctcaaacacctgagctcaagcaatcctcttgtctcagcctcacaaagtcctaggattacaggcatgagccactgcacccagc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        36086 99 -   1987038 atgttgcccaggctggtctcaaacacctgagctcaagcaatcctcttgtctcagcctcacaaagtcctaggattacaggcatgagccactgcacccagc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116629 99 -  24206276 atgttgcccaggctggtctcaaacacctgagctcaagcaatcctcttgtctcagcctcacaaagtcctaggattacaggcatgagccactgcacccagc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        31791 99 -   1397330 atgttgcccaggctggtctcaaacacctgagctcaagcaatcctcttgtctcagcctcacagagtcctaggattacaggcatgagccactgcacccagc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        55122 98 -   1784207 atgttgcccaggctggtctcaaacacctgagctcaagcaatcttcttgtctcagcctcacaaagtcctaggattacaggcatgagccactgcaccc-gC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22252935 97 + 158406734 atgttgcccaggctgttctttaac-cctgagctcaagcaatcctcgtgcctcagtcccacaaagtcttgggattacaagtgtgaaccaccgcacccag-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488611 98 +  54856640 atgttgcccaggctgttcctgaactcctgagctcaagcaatcctcgtgcctcagtctcacaaagtcctgggattacaagtgtgaaacactgcaaccag-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631574 98 -   2910086 atgttgcccaggctgttcttgaactcctgagctcaaacaatccttgtgcatcggtctcacaaagtcctgggattacgagtgtgaaccactgcacccag-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40659971 98 +  42888418 atgttgcccaggctgttcttgaactcctgagctcaagcaatccttgtgcctcagtctcacaaagtcctgggattacaagtgtgaaccactgcacccag-
i aotNan1.NW_018505940v1    I 28 C 0
s otoGar3.GL873530             645495  6 -  36342412 ----------------------------GAGCTC-----------------------------------------------------------------
i otoGar3.GL873530          C 0 C 0
e micMur3.chr9              113282792 329 + 116334831 I
e proCoq1.NW_012142813v1        27877 148 +     80520 I
e mm10.chr7                  81364293 262 + 145441459 I
e dasNov3.JH570731            1815836  0 +   3943991 C
e canFam3.chr3               54422040 50 +  91889043 I

a score=340865.000000
s hg38.chr15_KI270850v1_alt    349796 26 +    430880 TTGATTTTATCTTAAGGGTAACTGAG
s panTro5.chr15              63503170 26 +  83230942 TTGATTTTATCTTAAGGGTAACTGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460307 26 +  99763055 TTGATTTTATCTTAAGGGTAACTGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60460 26 -   1709092 TTGATTTTATCTTAAGGGTAACTGAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17219927 26 - 121039945 ttgattttatcttaAGGGTAACTGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900821 26 + 169600520 TTGATTTTATCTTAAGGGTAACTGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427557 26 - 171882078 TTGATTTTATCTTAAGGGTAACTGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        38307 26 -   2311642 TTGATTTTATCTTAAGGGTAACTGAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        36185 26 -   1987038 ttgattttatcttaAGGGTAACTGAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116728 26 -  24206276 ttgattttatcttaAGGGTAACTGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        31890 26 -   1397330 ttgattttatcttaAGGGTAACTGAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        55220 26 -   1784207 TTGATTTTATCTTAAGGGTAACTGAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22253032 26 + 158406734 TTGATTTTATCTTAAGGGCAACTGAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488709 26 +  54856640 cTGATTTTATCTTAAGGGCAACTGAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631672 26 -   2910086 TTGATTTTATCTTAAGGGCAACTGAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40660069 26 +  42888418 TTGATTTTATCTTAAGGGCAACTGAG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             645501 23 -  36342412 -TGATTTTATCCTAAAGGTAACTG--
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81364555 26 + 145441459 TTGGTTCTGTATGGAGGATAACTAAA
i mm10.chr7                 I 262 C 0
s dasNov3.JH570731            1815836 26 +   3943991 TTGAGTTTATCCTGAAGGTTTCTGGG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113282792 329 + 116334831 I
e proCoq1.NW_012142813v1        27877 148 +     80520 I
e canFam3.chr3               54422040 50 +  91889043 I

a score=1209512.000000
s hg38.chr15_KI270850v1_alt    349822 110 +    430880 AGACAC-GGAAAAGGA-GATCTGCAGAGCTGTTGTGTGGATAGCAAAGAAGGCTGACCAGGGAAACTAAGGAAAAGCACCAGTAG-------GAA----CCAGTGTCCAGCAAAGA--GGAAAAC
s panTro5.chr15              63503196 110 +  83230942 AGACAT-GGAAAAGGG-GATCTGCAGAGCTGTTGTGTGGATAGCAAAGAAGGCTGACCAGGGAAACTAAGGAAAAGTACCAGTAG-------GAA----CCAGTGTCCAGCAAAGA--GGAAAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460333 110 +  99763055 AGACAT-GGAAAAGGG-GATCTGCAGAGCTGTTGTGTGGATAGCAAAGAAGGCTGACCAGGGAAACTAAGGAAAAGTACCAGTAG-------GAA----CCAGTGTCCAGCAAAGA--GGAAAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60486 110 -   1709092 AGACAC-GGAAAAGGG-GATCTGCAGAGCTGTTGTGTGGATAGCAAAGAAGGCTGACCAGGGAAACTAAGGAAAAGTACCAGTAG-------GAA----CCAGTGTCCAGCAAAGA--GGAAAAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17219953 110 - 121039945 AGACAC-GGAAAAGGG-GATCTGCAGAGCTGTTGTGTGGATAGCAAAGAAGGCTGACCAGGGAAACTAAGGAAAAGTACCAGTAG-------GAA----CCAGTGTCCAGCAAAAA--GGAAAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900847 109 + 169600520 AGACAC-GGAAAAGGC-CATCTGCAGAGCTATTGTGTAGATAGCAGAGAAGGCTGACCAGGGAAACTAAGGAAAAGTACCAGTAG-------GAA----CCAGCGCCTAGCAAAGA---GAAAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427583 109 - 171882078 AGACAC-GGAAAAGGC-CATCTGCAGAGCTATTGTGTAGATAGCAGAGAAGGCTGACCAGGGAAACTAAGGAAAAGTACCAGTAG-------GAA----CCAGCGCATAGCAAAGA---GAAAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        38333 109 -   2311642 AGACAC-GGAAAAGGC-CATCTGCAGAGCTATTGTGTAGATAGCAGAGAAAGCTGACCAGGGAAACTAAGGAAAAGTACCAGTAG-------GAA----CCAGCGCCTAGCAAAGA---GAAAAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        36211 109 -   1987038 AGACAC-GGAAAAGGC-CATCTGCAGAGCTACTGTGTAGATAGCAGAGAAGGCTGACCAGGGAAACTAAGGCAAAGTACCAGTAG-------GAA----CCAGCGCCTAGCAAAGA---GAAAAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116754 109 -  24206276 AGACAC-GGAAAAGGC-CATCTGCAGAGCTACTGTGTGGATAGCAAAGAAGGCTGACCAGGGAAACTAAGGAAAAGTACCAGTAG-------GAA----CCAGCGCCTAGCAAAGA---GAAAAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        31916 109 -   1397330 AGACAT-GGAAAAGGC-CATCTGCAGAGCTACTGTGTAGATAGCAGAGAAGGCTGACCAGGGAAACTAAGGGAAAGTACCAGTAG-------GAA----CCAGCGCCTAGCAAAGA---GAAAAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        55246 110 -   1784207 AGACACAGAAAAAGGC-CATCTGCAGAGCTATTGTGTGGATAGCAAAGAAGGCTGACCAGGGAAACTAAGGAAAAGTACCAGTAG-------GAA----CCAGCGCCTAGCAAAGA---GAAAAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22253058 109 + 158406734 AGACAC-AGAAAAGGT-GGTCTGCAGAACTATTGT-GGGATAGCAAAGAAGACTGACCAGGGAAACTAAGGAAGAGTACCAGAAG-------GAA----CCAGTGCCCAGCAGAGA--GGAAAAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488735 110 +  54856640 AGACAC-TGAAAAGGT-GGTCTGCAGAACTACTGTGGGGATGGCAAAGAAGGCTGACCAGGGAAACTAAGGAAGAGTACCAGTAG-------GAA----CCAGTGCCCAGCAGAGA--GGAAACC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631698 110 -   2910086 AGACAC-AGAAAAGGT-GGTCTGCAGAACTATTGTGGGGATAGCAAAGAAGGCTGACCAAGGGAACTAAGGAAGAGTACCAGTAG-------GAA----CCAGTGCCCAGCAGAGA--GGAAAAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40660095 110 +  42888418 AGACAC-AGAAAAAGT-GGTCTGCAGAACTATTGTGGGGATAGCAAAGAAGGCTGACCAGGGAAGCTAAGGAAGAGTACCAGTAA-------GAA----CCAGTGCCCAGCAGAGA--GGAAAAC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             645524 109 -  36342412 -------GGAAGAGGC--ACCAGCAGAGCTGCTGTGGGACTAGCAAAGAGGTCTAGCCAGAGAAAA-GACGACAAATGGCAGTGGGACCCATGAC----CCAGGACCCAGCTGAAA--AGGGAAC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81364581 106 + 145441459 ACGCCA-CGAAAAGAT-GGTCTGAGGAGCTACTG--AGGATGGCAGAGAAG-CTGAGCACAGAACCTGAGGATGC---CCTGCAG-------TAT----CTACCATCCAGTGAGAAACAGAACAC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54422090  81 +  91889043 AGACAC---------------TGAGGAGCTGCTGTGGGGGTGGCAGAGGAGGCTGAC-----------AGGAAGGCCACCACCAC---------A----CCGGGGCCCACTGACAG-----AGAC
i canFam3.chr3              I 50 C 0
s dasNov3.JH570731            1815862 115 +   3943991 AGACAC-TGAAGAGGTGGGTCTGAAGAGCTGTTGTGGGGATGGCAAAGGAGGATGACCAGGGATTCAAAGGAAAACTGCCTGCCG-------GAGTTATCCAGGGCCTAGATGAGA--GGAGAAC
i dasNov3.JH570731          C 0 I 1659
e micMur3.chr9              113282792 329 + 116334831 I
e proCoq1.NW_012142813v1        27877 148 +     80520 I

a score=13365.000000
s hg38.chr15_KI270850v1_alt    349932 1 +    430880 T
s panTro5.chr15              63503306 1 +  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460443 1 +  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60596 1 -   1709092 T
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17220063 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900956 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427692 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        38442 1 -   2311642 T
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        36320 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116863 1 -  24206276 T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        32025 1 -   1397330 T
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        55356 1 -   1784207 T
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22253167 1 + 158406734 T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488845 1 +  54856640 T
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631808 1 -   2910086 T
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40660205 1 +  42888418 T
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             645633 1 -  36342412 T
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81364687 1 + 145441459 T
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54422171 1 +  91889043 C
i canFam3.chr3              C 0 C 0
e micMur3.chr9              113282792 329 + 116334831 I
e proCoq1.NW_012142813v1        27877 148 +     80520 I
e dasNov3.JH570731            1815977 1659 +   3943991 I

a score=50358.000000
s hg38.chr15_KI270850v1_alt    349933 4 +    430880 AAGT
s panTro5.chr15              63503307 4 +  83230942 AAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460444 4 +  99763055 AAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60597 4 -   1709092 AAGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17220064 4 - 121039945 AAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900957 4 + 169600520 AAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427693 4 - 171882078 AAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        38443 4 -   2311642 AAGT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        36321 4 -   1987038 AAGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116864 4 -  24206276 AAGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        32026 4 -   1397330 AAGT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        55357 4 -   1784207 AAGT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22253168 4 + 158406734 AAGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488846 4 +  54856640 AAGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631809 4 -   2910086 AAGT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40660206 4 +  42888418 AAGT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             645634 4 -  36342412 GTGT
i otoGar3.GL873530          C 0 I 4
s mm10.chr7                  81364688 4 + 145441459 TAAA
i mm10.chr7                 C 0 I 2
s canFam3.chr3               54422172 4 +  91889043 ATGT
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1817636 4 +   3943991 AAGT
i dasNov3.JH570731          I 1659 C 0
e micMur3.chr9              113282792 329 + 116334831 I
e proCoq1.NW_012142813v1        27877 148 +     80520 I

a score=114637.000000
s hg38.chr15_KI270850v1_alt    349937 8 +    430880 TGGACTTA
s panTro5.chr15              63503311 8 +  83230942 TGGACTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460448 8 +  99763055 TGGACTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60601 8 -   1709092 TGGACTTA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17220068 8 - 121039945 TGGACTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900961 8 + 169600520 TGGACTTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427697 8 - 171882078 TGGACTTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        38447 8 -   2311642 TGGACTTG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        36325 8 -   1987038 TGGACTTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116868 8 -  24206276 TGGACTTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        32030 8 -   1397330 TGGACTTG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        55361 8 -   1784207 TGGACTTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22253172 8 + 158406734 TGGACTTA
i calJac3.chr6              C 0 M 5183
s saiBol1.JH378108           50488850 8 +  54856640 TGGACTTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631813 8 -   2910086 TGGACTTA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40660210 8 +  42888418 TGGACTTA
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        28025 8 +     80520 TGGACTTA
i proCoq1.NW_012142813v1    I 148 C 0
s otoGar3.GL873530             645642 8 -  36342412 TGGACTTA
i otoGar3.GL873530          I 4 C 0
s mm10.chr7                  81364694 8 + 145441459 TGGACTTC
i mm10.chr7                 I 2 C 0
s canFam3.chr3               54422177 7 +  91889043 TACACCG-
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1817640 8 +   3943991 TGGACTGC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113282792 329 + 116334831 I

a score=762398.000000
s hg38.chr15_KI270850v1_alt    349945 85 +    430880 AAGG-----ATTTTCTCCAGCAGAGCTCAGATACCT-GGATGGACACT-GAAGCCATACAGAGCTATGATTTTGTTCCCCC--AAGGGGGTATG
s panTro5.chr15              63503319 86 +  83230942 AAGG-----ATTTTCTCCAGCAGAGCTCAGATACCT-GGATGGACATTTGGAGCCATACAGAGCTATGATTTTGTTCCCCC--AGGGGGGTATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460456 86 +  99763055 AAGG-----ATTTTCTCCAGCAGAGCTCAGATACCT-GGATGGACATTTGGAGCCATACAGAGCTATGATTTTGTTCCCCC--AACGGGGTATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60609 85 -   1709092 AAGG-----ATTTTCTCCAGCAGAGCTCAGATACCT-GGATGGACACT-GGAGCCATACTGAGCTATGATTTTGTTCCCCC--AAGGGGGTATG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17220076 85 - 121039945 AAGG-----ATTTTGTCCAGCAGAGCTCAGACACCT-GGATGGACACT-GGAGCCATACAGAGCTACGATTTTGTTCCCCC--AAGGGGGTATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60900969 75 + 169600520 AAGG-----ATTTTCTCCAGCAGAGCTCAGAT-----------ACACT-GGAGCCATCCAGAGCTATGATTTTGTTCCCCC--AACGGGGTATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427705 75 - 171882078 AAGG-----ATTTTCTCCAGCAGAGCTCAAAT-----------ACACT-GGAGCCATCCAGAGCTATGATTTTGTTCCCCC--AACGGGGTATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        38455 75 -   2311642 AAGG-----ATTTTCTCCAGCAGAGCTCAGAT-----------ACACT-GGAGCCATCCAGAGCTATGATTTTGTTCCCCC--AACAGGGTATG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        36333 75 -   1987038 AAGG-----ATTTTCTCCAGCAGAGCTCAGAT-----------ACACT-GGAGCCATCCAGAGCTATGATTTTGTTCCCCC--AACGGGGTATG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116876 75 -  24206276 AAGG-----ATTTTCTCCAGCAGAGCTCAGAT-----------ACACT-GGAGCCATCCAGAGCTATGATTTTGTTCCCCC--AACGGGTTATG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        32038 75 -   1397330 AAGG-----ATTTTCTCCAGCAGAGCTCAGAT-----------ACACT-GGAGCCATCCAGAGCTATGATTTTGTTCCCCC--AACGGGGTATG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        55369 85 -   1784207 AAGG-----ATTTTCTCCAGCAGAGCTCAGATACCT-GGATGGACACT-GGAGCCATCCAGAGCTACGATTTTGTTCCCCC--AATGGGGTATG
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50488858 85 +  54856640 AAGG-----Attttctccagcagagttcaggtacct-ggatggacact-ggactgatacagagctatgattttgttccccc--aagagggtatg
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631821 63 -   2910086 ---------------------------AAGGTACCT-GGATGGACACT-GGACCGATACAGAGCTATGATTTTGTTCCCTC--AAGGGGGTATG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40660218 85 +  42888418 AAGG-----ATTTTCTCCAGCAGAGTTCAGGTACCT-GGATGGACACT-GGACCAATACAGAGCTATGATTTTGTTTCCTC--AAGGGGGTATG
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        28033 87 +     80520 CAGG-----ACTTTCTACAGCAGAGATTAGGCACCT-GGATGGACACT-GGACCCACACAAGGCTGTGATTTTTTTTCCCCTGAAAGGGGTGTG
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             645650 86 -  36342412 CAGG-----ATTTTCCCTAGCAGAGCTCAAGCACCTGGGACGGACACT-AAACCCACACAGGGCTATGACTTTTTTTCCTC--AAAGGGGTTTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81364702 83 + 145441459 -AGC-----ATATTCTCCATCAGAACTAAGGCACCT-CGAAGGATACT-AGACCCACAGCGGGCTAGGATCATTTTCCCTT---CTGGGACATG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54422184 63 +  91889043 ATGGCC---ACTCTCTCCAGTAGTGTT-AGGAACCT-AGAGACACACT-GGACCCACATAGGGCTATGC-------------------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1817648 77 +   3943991 -----TGCAATTTTCTCTGGAAGTGCTCAGCAACCT-GGACAGATGCT-GGAC-------AGGCTGTG-TTTTTTTTCTCC--AAGGGAGAGTG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113282792 329 + 116334831 I
e calJac3.chr6               22253180 5183 + 158406734 M

a score=410602.000000
s hg38.chr15_KI270850v1_alt    350030 32 +    430880 AAGGAATAAATGTGACAACAGAATTGATGATA
s panTro5.chr15              63503405 32 +  83230942 AAGGAATAAATGTGACAACAGAATTGATGATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460542 32 +  99763055 AAGGAATAAATGTGACAACAGAATTGATGATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60694 32 -   1709092 AAGGAATAAATGTGACAACAGAATTGATGATA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17220161 32 - 121039945 AAGGAATAAATGCGACAACAGAATTGATGATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60901044 32 + 169600520 AAGGAATAAATGGGACAACAGAGTTGATGATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427780 32 - 171882078 AAGGAATAAATGGGACAACAGAGTTGATGATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        38530 32 -   2311642 AAGGAATAAATGGGACAACAGAGTTGATGATA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        36408 32 -   1987038 AAGGAATAAATGGGACAACAGAGTTGATGATA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116951 32 -  24206276 AAGGAATAAATGGGACAACAGAGTTGATGATA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        32113 32 -   1397330 AAGGAATAAATGGGACAACAGAGTTGATGATA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        55454 32 -   1784207 AAGGAATAAATGGGACAACAGAGTTGATGATA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22258363 29 + 158406734 AAGAAAGAAATGGGACAACAGAGT---TGATA
i calJac3.chr6              M 5183 C 0
s saiBol1.JH378108           50488943 29 +  54856640 aaagaagaaatgggacaagagagt---tgata
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631884 32 -   2910086 AAGGAAGAAATGGGACAACAGAGTTGATGATA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40660303 32 +  42888418 AAGGAAGAAATGGGACAACAGAGTTGATGATA
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        28120 32 +     80520 AAGGAAGAAATGAAACAACAGAGTTGATGGTG
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             645736 32 -  36342412 AAGGAGTAAATGGGACAACAGAGTTGACGGTA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81364785 18 + 145441459 ---GAATA-----------ATATTCGATGTTG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54422247 29 +  91889043 -AGGAGGAAGTGGGACA--AGAACTGATGGAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1817725 24 +   3943991 AAGAAGGA--------AACAGAGTTGATGGTA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113282792 329 + 116334831 I

a score=1907653.000000
s hg38.chr15_KI270850v1_alt    350062 139 +    430880 ACAG-CAACAAAGGAAATGAAGAATGGGTCGTGCATTATAGGCTAAAGACAGAA-CAAAGTCAATAGATTAGGAGCAAATAAATGGAAAACCAGTGATTT--CAATAGGCTGATAGCTATAAGAGGAATGAGGGTGGCAGACA
s panTro5.chr15              63503437 139 +  83230942 ACAG-CAACAAAGGAAATGAAGAATGGGTCGTGCATTATAGGCTAAAGACAGAA-CAAAGTCAATAAATTAGGAGCAAATAAATGGAAAACCAGTGATTT--CAATAGGCTGATAGCTATAAGAGGAATGAGGGTGGCAGACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460574 139 +  99763055 ACAG-CAACAAAGGAAATGAAGAATGGGTCGTGCATTATAGGCTAAAGACAGAA-CAAAGTCAATAAATTAGGAGCAAATAAATGGAAAACCAGTGATTT--CAATAGGCTGATAGCTATAAGAGGAATGAGGGTGGCAGACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60726 139 -   1709092 ACAG-CAACAAAGGAAACGAAGAATGGGTCGTGGGTTATAGGCTAAAGACAGAA-CAAAGTCAACAGATTAGGAGCAAATAAATGGAAAACCAGTGATTT--CAATAGGCTGATAGCTATAAGAGGAATGAGGGTGGCAGACA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17220193 139 - 121039945 ACAG-CAACAAAGGAAATGAAGAATGGGCCGTACATTATAGGCTAAAGACAGAA-CAAAGTCAATAGATTAGGAGCAAATAAATGGAAGACCAGTGATTT--CAATAGGCCGATAGCTATAAGAGGAATGAGGGTGGCAGACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60901076 133 + 169600520 ACAG-CAACAAAGGAAATGAAGAATGGGTCGTGCATTATAGGCTAAAGACAGAA-CAAAGTCAATAGTTTGGGAGCAAATAAGTGGAAAATCAGTGTTTT--CAATAGGCTG------ATAAGAAGAATGAGGGTGGCAGATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427812 133 - 171882078 ACAG-CAACAAAGGAAATGAAGAATGGGTCATGCATTATAGGCTAAAGACAGAA-CAAAGTCAATAGTTTGGGAGCAAATAAGTGGAAAATCAGTGTTTT--CAATAGGCTG------ATAAGAAGAATGAGGGTGGCAGATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        38562 133 -   2311642 ACAG-CAACAAAGGAAATGAAGAATGGGTCGTGCATTATAGGCTAAAGACAGAA-CAAAGTCAATAGATTGGGAGCAAATAAGTGGAAAATCAGTGTTTT--CAATAGGCTG------ATAAGAAGAATGAGGGTGGCAGATG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        36440 133 -   1987038 ACAG-CAACAAAGGAAATGAAGAATGGGTCGTGCATTATAGGCTAAAGACAGAA-CAAAGTCAATAGTTTGGGAGTAAATAAGTGGAAAATCAGTGTTTT--CAATAGGCTG------ATAAGAAGAATGAGGGTGGCAGATG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21116983 133 -  24206276 ACAG-CAACAAAGGAAATGAAGAATGGGTCGTGCATTATAGGCTAAAGACAGAA-CAAAGTCAATAGACTGGGAACAAATAAATGGAAAATCAGTGTTTT--CAATAGGCTG------ATAAGAAGAATGAGGGTGGCAGATG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        32145 133 -   1397330 ACAG-CAACAAAGGAAATGAAGAATGGGTCGTGCATTATAGGCTAAAGACAGAA-CAAAGTCAATAGTTTGGGAGTAAGTAAGTGGAAAATCAGTGTTTT--CAATAGGCTG------ATAAGAAGAATGAGGGTGGCAGATG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        55486 133 -   1784207 ACAG-CAACAAAGGAAATGAAGAATGGGTTGTGCATTATAGGCTAAAGACAGAA-CAAAGTCAATAGATTGGGAGCAAATAAATGGAAAATCAGTGTTTT--CAATAGGCTG------GTAAGAAGAATGAGGGTGGCAGACG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22258392 139 + 158406734 ACAG-CAACTAAGGAAATGAAGAATGGATTGTGCATTATAGGTTAAAGGCAGAA-CAAAGTCAATAGACTGGGAACAAATAAATGGAAAACCAGAGATTT--CAATAGGCTGATAGCTATAAGAAGAATGAAGATGGCACACA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50488972 139 +  54856640 acag-caacaaaggaaatgaacaatgggtcgtgcattataggctAAAGGCAGAA-CAAAGTCAATAGACTGGGAACAAATAAATGGAAAACCAGAGATTT--CAATAGGCTGAGAGCTGTAAGAAGAATGAAGATGGCACACA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       631916 139 -   2910086 ACAG-CAACAAAGGAAATGAAGAATGGATTGTGCATTATAGGCTAAAGGCAGAA-CAAATTCAATAGATTGGGAACAAATAAATGGAAAACCAGAGATTT--CAATAGGCTGATAGCTGTAAGAAGAACGAAGATGGCACACA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40660335 141 +  42888418 ACAG-CAACAAAGGAAATGAAGAATGGATTGTGCATTATAGGCTAAAGGCAGAA-CAAAGTCAATAGATTGGGAACAAATAAATGGAAAACCAGAGATTTCACAATAGGCTGATAGCTATAAGAAGAATGATGGCAGTACACA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113283121 139 + 116334831 ACAG-CAATAGAGGAGATAAAGAACGGGTCCTGTATTACAGGCTAATACCAGAA-GAGAGTCAATAGACTGGGAGCAAATAAATGGAGAACTAGTGATTG--CAATAGGCTGACAGCTGTAAGAGAAATAAAGGTGGCAGACA
i micMur3.chr9              I 329 C 0
s proCoq1.NW_012142813v1        28152 139 +     80520 ACAG-CAATAGAAGAGATGAAGAATGGGTCGTGTATTATGGGCTAACAACAGAA-GAGAGTCAACAGACTGGGAGCAAAATAATGGAGAACTAGTGATTT--CAATAGGCTGACAGCTGTGAGAGAAAAAAAGGTGGCAGACA
i proCoq1.NW_012142813v1    C 0 I 144
s otoGar3.GL873530             645768 139 -  36342412 ACAG-CACCACAGGAGATCAAGAATGGTTTGTAAGTTACAGGCTAAGGTCAGAA-GAGAGTCAACAGACTAGAAGCAAATAAATGCAGAACCAGTGATTT--CCACAGGCTGACAGCAGTAAGAGGAATGAATGTGGCAGACA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81364803 133 + 145441459 ACAA-CAAGTAAGGAGTTAAGGAACAGGTCAAGTGCTACAAGTTAAAGACAGAAGCAGACAGAAGAGATCAGGAGCAGATGGACAGAGAGTCAGCTAGTT--CCATAAGCTGGCAGCTCTAAG--GAATGGAGAAGGC-----
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54422276 121 +  91889043 GCAG-CTCTAGGGGA-----------GGTCATGCGATATAGGTGAAACACAGAA-GTGGGTGAACAGAGTAGAAGCAAA----TGTAAAACCAGCCATTT--CAACGTGCTGACAGCTTCAAGAGGGATGAAGG-GGTAGA--
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1817749 106 +   3943991 ACAGTTAACAGAGGAGATACAAAATGGGTC----------------------AA-C---------AGATTAGGATCAAATG---GAGGAATCAGCAATTT--CAAAGGGCTGACACCTGTAAGAGGAAGGAAGGTGGTAAAGA
i dasNov3.JH570731          C 0 C 0

a score=106654.000000
s hg38.chr15_KI270850v1_alt    350201 9 +    430880 ATATAAACA
s panTro5.chr15              63503576 9 +  83230942 ATATAAACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460713 9 +  99763055 ATATAAACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60865 9 -   1709092 ATATAAACA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17220332 9 - 121039945 AGATAAACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60901209 9 + 169600520 AGATAAACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427945 9 - 171882078 AGATAAACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        38695 9 -   2311642 AGATAAACA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        36573 9 -   1987038 AGATAAATA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21117116 9 -  24206276 AGATAAACA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        32278 9 -   1397330 AGATAAACA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        55619 9 -   1784207 AGATAAACA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22258531 9 + 158406734 AGATAAATA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50489111 9 +  54856640 AGACAAGTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       632055 9 -   2910086 AGATAAATA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40660476 9 +  42888418 AGATAAACA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113283260 9 + 116334831 GGATAAACA
i micMur3.chr9              C 0 I 1627
s otoGar3.GL873530             645907 9 -  36342412 GGATAAACA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54422397 5 +  91889043 --ATAAG--
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1817855 9 +   3943991 TGATAAACA
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        28291 144 +     80520 I
e mm10.chr7                  81364936 0 + 145441459 C

a score=190642.000000
s hg38.chr15_KI270850v1_alt    350210 18 +    430880 CGAAGAGGTGGGACACTG
s panTro5.chr15              63503585 18 +  83230942 CGAAGAGGTGGGACATTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460722 18 +  99763055 CGAAGAGGTGGGACATTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60874 18 -   1709092 CGAAGAGGTGGGACACTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17220341 18 - 121039945 CGAAGAGGTGGGACATTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60901218 18 + 169600520 CGAAGAGGTGGGACAGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427954 18 - 171882078 CGAAGAGGTGGGACAGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        38704 18 -   2311642 CGAAGAGGTGGGACAGTG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        36582 18 -   1987038 CGAAGAGGTGGGACAGTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21117125 18 -  24206276 CGAAGAGGTGGGACAGTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        32287 18 -   1397330 CGAAGAGGTGGGACAGTG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        55628 18 -   1784207 CGAAGAGGTGGGACAGTG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22258540 17 + 158406734 -GAAGAGTTGAGACAGTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50489120 17 +  54856640 -GAAGAGGTGGGACAGTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       632064 17 -   2910086 -GAAGAGGTGGGACGGTG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40660485 17 +  42888418 -GAAGAGGTGGGACAGTG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             645916  8 -  36342412 ---------GGAACAGC-
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54422402 17 +  91889043 -AAGGTGGTGGGATGGCG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1817864 15 +   3943991 ---GCAGGCGGGGTACTG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113283269 1627 + 116334831 I
e proCoq1.NW_012142813v1        28291 144 +     80520 I
e mm10.chr7                  81364936  0 + 145441459 C

a score=1057257.000000
s hg38.chr15_KI270850v1_alt    350228 80 +    430880 AAGATTAAGAGCTCTGAGGATGGCAAGGTCCAGAGTATGG---TAGAGGTGGCTGACTTAGAATGTGAGAAGTCTGAAATATT
s panTro5.chr15              63503603 80 +  83230942 AAGATTAAGAGCTCTGAGGATGGCAAGGTCCAGAGTATGG---TAGAGGTGGCTGACTCAGAATGTGAGAAGTCTGAAATATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460740 80 +  99763055 AAGATTAAGAGCTCTGAGGATGGCAAGGTCCAGAGTATGG---TAGAGGTGACTGACTCAGAATGTGAGAAGTCTGAAATATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60892 77 -   1709092 AAGATTAAGAGCTCTGAGGATGGCAAGGTCCAGATTATGG---TAGAGGTGGCTGACTTAGAATGTG---AGTTTGAAATATT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17220359 83 - 121039945 AAGATTAAGAGCTCTGAGGATGGCAAGGTCCAGAGTATGGAACTAGAGGTGGCTGACTTAGAATGTGAGAAGTTTGAAATATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60901236 83 + 169600520 AAGATTAAGAGCTCTGAGTATGTCAAGGTCCAGAGTATGGAACTAGACATGGCTGACTTAGAATGTGGAAAGTTTGAAATATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108427972 83 - 171882078 AAGATTAAGAGCTCTGAGGATGTCAAGGTCCAGAGTATGGAACTAGACATGGCTGACTTAGAATGTGGAAAGTTTGAAATATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        38722 83 -   2311642 AAGATTAAGAGCTCTGAGGATGTCAAGGTCCAGAGTATGGAACTAGACATGGCTGACTTAGAATGTGGAAAGTTTGAAATATT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        36600 83 -   1987038 AAGATTAAGAGCTCTGAGGATGTCAAGGTCCAGAGTATGGAACTAGACATGGCTGACTTAGAATGTGGAAAGTTTGAAATATT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21117143 83 -  24206276 AAGATTAAGAGCTCTGAGGATGTCAAGGTCCAGAGTATGGAACTAGACATGGCTGACTTAGAATGTGGAAAGTTTGAAATATT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        32305 83 -   1397330 AAGATTAAGAGCTCTGAGGATGTCAAGGTCCAGAGTATGGAACTAGACATGGCTGACTTAGAATGTGGAAAGTTTGAAATATT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        55646 83 -   1784207 AAGATTAAGAGCTCTGAGGATGTCAAGGTCCAGAGTATGGAACTAGACACGGCTGACTTAGAATGTGGGAAGTTTGAAATATT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22258557 83 + 158406734 AAGATTAAGTGTTCTGAGGATGGCAAGGTCCAGAGTATGGAACTAGAGGTGGCTGACTTAGAATGTGTTAAGTTTGAAATATT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50489137 70 +  54856640 AAGATTAAGAGTTCTGAGGATGGCAAGGTCC-------------AGAGGTGGCTGACTTAGAATGTGTTAAGTTTGAAATATT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       632081 83 -   2910086 AAGATTAAGAGTCCTGAGGATGGCAAGGTCCAGAGTATGGAACTAGAGGTGGCTGACTTAGAATGTGTTAAGTTTGAAATATT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40660502 83 +  42888418 AAGATTAAGAGTTCTGATGATGGCAACGTCCAGAGTATGGAACTAGAGGTGGCTGACTTAGAATGTGTTAAGTTTGAAATATT
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        28435 83 +     80520 AAGATTGAGAGTTCTGAGGATGCCAAGGTCCAGGGTATGGACGCAGAGGTGGCTGAATCAGAATGTGTAAAGTCTGAAATATT
i proCoq1.NW_012142813v1    I 144 I 2873
s otoGar3.GL873530             645924 67 -  36342412 ----------------AGAAAGGCAAGGTCCAGGGTATGGAACTAGAGGGGGTTGACTTACATTGTGTGAAGTCTGAGGTATT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81364936 82 + 145441459 AAGAACATGAATCCTAAGGACAAGGAGGTCCAGGATATGGAACTGTAAGTGGCTAACTTAGATTATATTAAGTC-GAAACACT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54422419 80 +  91889043 AACACT--GAGCTTTGAGGATGGCAAGATACAGGATGCTG-ACCACAGTGGGCTGACGTGGAATGTGTGGAATCTGAAATACT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1817879 74 +   3943991 --------CCCTTCTGAGAGGAGCACGGTCCTGGGTGTGGGACTATAGGGGGCTGA-GGACAATGTGTAGAGTCTAAAATATT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113283269 1627 + 116334831 I

a score=703224.000000
s hg38.chr15_KI270850v1_alt    350308 61 +    430880 AGAT----AAG-TCATTCATGTGGACACTAAAAAG-ACCGATGG-TGATAACTGGGCCTGGAGTT----------------AAA
s panTro5.chr15              63503683 61 +  83230942 AGAT----AAG-TCATTCATGTGGACACTAAAAAG-ACCGATGG-TGATAACTGGGCCTGGAGTT----------------AAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460820 61 +  99763055 AGAT----AAG-TCATTCATGTGGACACTAAAAAG-ACCGATGG-TGATAACTGGGCCTGGAGTT----------------AAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        60969 61 -   1709092 AGAT----AAG-TCATTCATGTGGACACTAAAAAG-ACCGATGG-TGATAACTGGGCCTGGAGTT----------------AAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17220442 61 - 121039945 AGAT----AAG-TCATTTATGTGGACACTAAAGAG-ATCGATGG-TGGTAACTGGGCCTGGAATT----------------AAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60901319 60 + 169600520 AGGT----ACG-TCATTCATGTGGACACTAAAGAG-A-CTATGG-TGATAACTGGGCTTGGAGTT----------------AAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108428055 61 - 171882078 AGGT----ACG-TCATTCATGTGGACACTAAAGAG-ACCTATGG-TGATAACTGGGCTTGGAGTT----------------AAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        38805 61 -   2311642 AGGT----ACG-TCATTCATGTGGACACTAAAGAG-ACCTATGG-TGATAACTGGGCTTGGAGTT----------------AAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        36683 62 -   1987038 AGGTA---ACG-TCATTCATGTGGACACTAAAGAG-ACCTATGG-TGATAACTGGGCTTGGAGTT----------------AAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21117226 61 -  24206276 AGGT----ACG-TCATTCATGTGGACACTAAAGAG-ACCTATGG-TGATAACTGGGCCTGGAGTT----------------AAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        32388 62 -   1397330 AGGTA---ACG-TCATTCATGTGGACACTAAAGAG-ACCTATGG-TGATAACTGGGCTTGGAGTT----------------AAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        55729 61 -   1784207 AGGT----AAG-TCATTCATGTGGACACTAAAGAG-ACCTATGG-TGATAACTGGGCCTGGAGTT----------------AAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22258640 65 + 158406734 AGTT----AAG-TCATTCATGTCGACACTAAAGAG-ACGTATGG-TGATAAATGGGCCTGGAGTT------------AAACAAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50489207 65 +  54856640 AGTT----AAG-TCATTCATGTCAACACTAAAGAG-ACCTATAG-TGATAAATGGGCCTGGAGTT------------AAACAAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       632164 61 -   2910086 AGTT----AAG-TCATTCATGTCGACACTAAAGAG-ACCTATGG-TGATTAATGGGCCTGGAGTT----------------AAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40660585 65 +  42888418 AGTT----AAG-TCATTCATGTCGACACTAAAGAG-ACCTATGG-TGATAAATGGGCCTGGAGTT------------AAACAAA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             645991 78 -  36342412 ----TAAAAGG-TCACCCATATGGACATTAAAGGGCATCTGTAT-TTATAACTGCAACTATGGTGAGGTCAAAAACAAAACAGG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81365018 63 + 145441459 GGAT----AGGTTTAACCAAACAGACATTTGAGAG-ATCCATGGTTGATAGCTGAACTCAGGGTT----------------TAA
i mm10.chr7                 C 0 I 980
s canFam3.chr3               54422499 61 +  91889043 GGAG----AGG-TCATCTAAATGGATATTCAAGGG-ACCCATGG-TGATACCTGGGCCTGGGGTT----------------AAA
i canFam3.chr3              C 0 I 5
s dasNov3.JH570731            1817953 61 +   3943991 GGAT----GGG-TCATCCATAGGGACATTAAAGAG-ACCCATGG-TGATAACTGGACCTGAAATT----------------AAA
i dasNov3.JH570731          C 0 I 6
e micMur3.chr9              113283269 1627 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I

a score=194896.000000
s hg38.chr15_KI270850v1_alt    350369 15 +    430880 ----------CAATGAGATTTTCAG
s panTro5.chr15              63503744 15 +  83230942 ----------CAATGAGATTTTCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460881 15 +  99763055 ----------CAATGAGATTTTCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        61030 15 -   1709092 ----------CAATGAGATTTTCAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17220503 15 - 121039945 ----------CGATGAGATTTTCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60901379 15 + 169600520 ----------CACTGAGATTTTCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108428116 15 - 171882078 ----------CACTGAGATTTTCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        38866 15 -   2311642 ----------CACTGAGATTTTCAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        36745 15 -   1987038 ----------CACTGAGATTTTCAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21117287 15 -  24206276 ----------CACTGAGATTTTCAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        32450 15 -   1397330 ----------CACTGAGATTTTCAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        55790 15 -   1784207 ----------CACTGAGATTTTCAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22258705 15 + 158406734 ----------CACTGAGATTTTCAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50489272 15 +  54856640 ----------CACAGAGATTTTCAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       632225 15 -   2910086 ----------CACAGAGATTTTCAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40660650 15 +  42888418 ----------CACTGAGATTTTCAG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             646069 15 -  36342412 ----------TATTGAGATCTTCAG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54422565 15 +  91889043 ----------TACTGAGATTTTCAG
i canFam3.chr3              I 5 C 0
s dasNov3.JH570731            1818020 25 +   3943991 CAAAAACAGGAGTTGAGATTTTCAA
i dasNov3.JH570731          I 6 I 174
e micMur3.chr9              113283269 1627 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e mm10.chr7                  81365081 980 + 145441459 I

a score=473349.000000
s hg38.chr15_KI270850v1_alt    350384  47 +    430880 AGA--------------------------------------------------------------------CCTGGGACA-Atgag--------------taggctctacttggcatagcagcatcttaa
s panTro5.chr15              63503759  47 +  83230942 AGA--------------------------------------------------------------------CCTGGGACA-Atgag--------------taggctctacttggcatagcagcatcttaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460896  47 +  99763055 AGA--------------------------------------------------------------------CCTGGGACA-Atgag--------------taggctctacttggcatagcagcatcttaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        61045  47 -   1709092 AGA--------------------------------------------------------------------CCTGGGACA-Atgag--------------taggctctacctggcatagcagcatcttaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17220518  47 - 121039945 AGA--------------------------------------------------------------------CCTGGGACA-ATCAC--------------CAGGCTCTACTTGGCATAGCAGCATCTTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60901394  47 + 169600520 AGA--------------------------------------------------------------------CCTGGGACA-ATGAG--------------TAGGCTCTACTTGGCATAGCAGTATCTTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108428131  47 - 171882078 AGA--------------------------------------------------------------------CCTGGGACA-ATGAG--------------TAGGCTCTACTTGGCATAGCAGTATCTTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        38881  47 -   2311642 AGA--------------------------------------------------------------------CCTGGGACA-ATGAG--------------TAGGCTCTACTTGGCATAGCAGTATCTTAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        36760  47 -   1987038 AGA--------------------------------------------------------------------CCTGGGACA-ATGAG--------------TAGGCTCTACTTGGCATAGCAGCATCTTAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21117302  47 -  24206276 AGA--------------------------------------------------------------------CCTGGGACA-ATGAG--------------TAGGCTCTACTTGGCATAGCAGCATCTTAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        32465  47 -   1397330 AGA--------------------------------------------------------------------CCTGGGACA-ATGAG--------------TAGGCTCTACTTGGCATAGCAGCATCTTAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        55805  47 -   1784207 AGA--------------------------------------------------------------------CCTGGGACA-ATGAG--------------TAGACTCTACTTGGCATAGCAGCATCTTAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22258720  47 + 158406734 AGA--------------------------------------------------------------------CCTGGGATA-ATAAG--------------TAGGTTCTACTTGGCATAGCAGCATCCTAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50489287  47 +  54856640 AGA--------------------------------------------------------------------CCTGGGATA-AGgag--------------taggctctacgtggcatagcagcatcctaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       632240  47 -   2910086 AGA--------------------------------------------------------------------CCTGGGATA-Atgag--------------taggctctacttggcatagcagcatcctaa
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40660665  47 +  42888418 AGA--------------------------------------------------------------------CCTGGGATA-ATGAG--------------TAGGCTCTACTTGGCATAGCAGCATCATAA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             646084 107 -  36342412 AAAAGGGGAAGGATTAAGAAACTGGTCAGAAGGAACAAAAAGAATgac-----------------------cctggggtagatgaggtttgggagagcaatatgcaccattcagaacagtagtgccctaa
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54422580 113 +  91889043 AGA--AGGAAGGAACTGGGAAGTTAGAAGGAAGAACAAAAGGAATGGCTCTGAGACAAGTGGTAGATGAGGCTTGGAAGA-ATGTG--------------TATCTCCTGCTTGACAATGTAGCACCTTCA
i canFam3.chr3              C 0 C 0
e micMur3.chr9              113283269 1627 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e mm10.chr7                  81365081 980 + 145441459 I
e dasNov3.JH570731            1818045 174 +   3943991 I

a score=1207821.000000
s hg38.chr15_KI270850v1_alt    350431 135 +    430880 aggaaaagtcttcagctaaagcagaaaatgggg-ggagcattcaccagt----aaaaaaaagaa----agccagtttgttaaccct-------------------------------------------------------------------------------ggaaaag---------------------------------------gggagtttcaag--------------------------------------------------------------------------------tggcacagcagagagctctgagagttgtcaagggaGAAA----
s panTro5.chr15              63503806 135 +  83230942 aggaaaagtcttcagctaaagcagaagatgggg-ggagcattcaccagt----aaaaagaagaa----agccagtttgttaaccct-------------------------------------------------------------------------------ggaaaag---------------------------------------gggagtttcaag--------------------------------------------------------------------------------tggcacagcagagagctctgagagttgtcaagggaGAAA----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80460943 135 +  99763055 aggaaaagtcttcagctaaagcagaagatgggg-ggagcattcaccagt----aaaaagaagaa----agccagtttgttaaccct-------------------------------------------------------------------------------ggaaaag---------------------------------------gggagtttcaag--------------------------------------------------------------------------------tggcacagcagagagctctgagagttgtcaagggaGAAA----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        61092 135 -   1709092 aggaaaagtcttcagctaaagcagaagatgggg-ggagcattcaccagt----aaaaagaagaa----agccagtttgttaaccct-------------------------------------------------------------------------------ggaaaag---------------------------------------gggagtttcaag--------------------------------------------------------------------------------tggcacagcagagagctctgagagttgtaaagggaGAAA----
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17220565 133 - 121039945 AGG--AAGTCTTCAGCTAAAGCAGAAGACGGGG-GGAGCATTCACCAGT----AAAAAGAAGAA----AGCCAGTTTGTTAACCCT-------------------------------------------------------------------------------GGAAAAG---------------------------------------GGGAGTTTCAAG--------------------------------------------------------------------------------TGGCACAGCAGAGAGCTCTGAGAGTTGTCAAGGGAGAAA----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60901441 115 + 169600520 AGGAAAAGTCTTCAGCTAAAG---------------------CACCAGT----AACAAGAAGGA----GGCCAGTTTGTTAACCCT-------------------------------------------------------------------------------GGAAAAG---------------------------------------GGGAGTTTCAAG--------------------------------------------------------------------------------TGGCACAGCAGAGAGCTCTGAGAGTTGTCAAGGGAGAAA----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108428178 115 - 171882078 AGGAAAAGTCTTCAGCTAAAG---------------------CACCAGT----AACAAGAAGGA----GGCCAGTTTGTTAACCCT-------------------------------------------------------------------------------GGAAAAG---------------------------------------GGGAGTTTCAAG--------------------------------------------------------------------------------TGGCACAGCAGAGAGCTCTGAGAGTTGTCAAGGGAGAAA----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        38928 115 -   2311642 AGGAAAAGTCTTCAGCTAAAG---------------------CACCAGT----AACAAGAAGGA----GGCCAGTTTGTTAACCCT-------------------------------------------------------------------------------GGAAAAG---------------------------------------GGGAGTTTCAAG--------------------------------------------------------------------------------TGGCACAGCAGAGAGCTCTGAGAGTTGTCAAGGGAGAAA----
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        36807 115 -   1987038 AGGAAAAGTCTTCAGCTAAAG---------------------CACCAGT----AACAAGAAGGA----GGCCAGTTTGTTAACCCT-------------------------------------------------------------------------------GGAAAAG---------------------------------------GGGAGTTTCAAG--------------------------------------------------------------------------------TGGCACAGCAGAGAGCTCTGAGAGTTGTCAAGGGAGAAA----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21117349 115 -  24206276 AGGAAAAGTCTTCAGCTAAAG---------------------CACCAGT----AACAAGAAGGA----GGCCAGTTTGTCAACCCT-------------------------------------------------------------------------------GGAAAAG---------------------------------------GGGAGTTTCAAG--------------------------------------------------------------------------------TGGCACAGCACAGAGCTCTGAGAGTTGTCAAGGGAGAAA----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        32512 115 -   1397330 AGGAAAAGTCTTCAGCTAAAG---------------------CACCAGT----AACAAGAAGGA----GGCCAGTTTGTTAACCCT-------------------------------------------------------------------------------GGAAAAG---------------------------------------GGGAGTTTCAAG--------------------------------------------------------------------------------TGGCACAGCAGAGAGCTCTGAGAGTTGTCAAGGGAGAAA----
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        55852 115 -   1784207 AGGAAAAGTCTTCAGCTAAAG---------------------CACCAGT----AACAAGAAGGA----GGCCAGTCTGTTAACCCA-------------------------------------------------------------------------------GGAAAAG---------------------------------------GGGAGTTTCAAG--------------------------------------------------------------------------------TGGCACAGCAGAGAACTCTGAGAGTTGTCAAGGGGGAAA----
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22258767 132 + 158406734 AGGAAAAGTCTTTAGCTAAAGCAGAAGCCGGAG-GGAGCATTCACCAGT----GACAAGGAGGA----GGACAGTTTGTTAACCCT-------------------------------------------------------------------------------GGAAAAG---------------------------------------AGAAGTTTCAAG--------------------------------------------------------------------------------TGGCCCAGCAAAGAGCTCTGAGAGTT---AAGGGAGAAA----
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50489334 129 +  54856640 aggaaaagtcttcagctaaagcagaagccggag-ggaggattcaCCAGT----GACA---AGAA----GGACAGTTTGTTAACCCT-------------------------------------------------------------------------------GGAAAAG---------------------------------------AGAAGTTTCAAG--------------------------------------------------------------------------------TGGCTCAACAGAGAGCTCTGAGAGTT---AAGGGAGAAA----
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       632287 132 -   2910086 aggaaaagtcttcagctaaagcagaagccagag-ggagcattcaccagt----gacaaggagga----ggacagtttgttaaccct-------------------------------------------------------------------------------ggaaaag---------------------------------------agaagtttcaag--------------------------------------------------------------------------------tggcccaacagagagctctgagagtt---aagggagaaa----
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40660712 132 +  42888418 AGGAAAAGTCTTCAGCTAAAGCAGAAGCCGGAG-GGAGCATTCACCAGT----GACAAGGAGGA----GGACAGTTTGTTAACCCT-------------------------------------------------------------------------------GGAAAAG---------------------------------------AGAAGTTTCAAG--------------------------------------------------------------------------------TGGCCCAGCAGAGAGCTCTGAGAGTT---AAGGGAGAAA----
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             646191 137 -  36342412 agaaaaagcttcctgctagagtagaaggtggag-gcagcattcaCCAGT----GACAAAAAAGGTGTCAGGCAGCCTGCCAATCTT-------------------------------------------------------------------------------GGAAAAG---------------------------------------GGGAGTATCAAG--------------------------------------------------------------------------------TAGCACAGGGAAAAGCTC--AGAGTTGTTAAGGGAGACA----
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54422693 335 +  91889043 AGGAAAAGCCCCCAGCAAATGCACAAGTCAGAG-GGAGCACTCCCCAGT----GAAAGAGAAGACACAGAGCTGTGTGTCAATCCTTTTTTTTTttttttttttttaattttatttatttatgatagtcacatagagagagagagaggcagagacataggcagagggagaagcaggctctatgcaccgggagcccgacgtgggattcgatccggggtctccaggatcacgccctgggccaaaggcaggcgccaaaccgctgcgccacccagggatcccTGTGTGTCAATCCTAAAAAAAGGTATAGCACAGTAGGTAACTCCAGGAGCTATCAAGGGAAA------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1818219 142 +   3943991 ATGAATAACATCCAGGCTAAGTCAAAGTTGGTGCAGAAGATTCACTAGTGAGGAACAAGATAAA----GGGCAGTTTGTTAATACT-------------------------------------------------------------------------------AGAAAAG---------------------------------------GGGATTTTCAGA--------------------------------------------------------------------------------C--CAAAGTAGAGACCTCCAACAGTTGGTAAAGGAAGGCGTAC
i dasNov3.JH570731          I 174 C 0
e micMur3.chr9              113283269 1627 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e mm10.chr7                  81365081 980 + 145441459 I

a score=3147949.000000
s hg38.chr15_KI270850v1_alt    350566 274 +    430880 CAGCATAAAGCAGAACGCCAG---AAAAAATACTCAAGAGGGGAT--GCTGCCCCA-AA-GGCTTGTATCTGAAAACACcaaagatggc-aag---ta--tgggctctggtaactgt---cc--tcacccaa---------ggtttttttt-aaaaggtattttggaaagagt-caaaaaagcaacatggt--aagcactacagacc--cctttcctcattcacatc-at---ttgtattcactattgtgttggtacacctgttttaccagccacaaaccc-atctacctctgctaacttgaaa-------gttctcta
s panTro5.chr15              63503941 274 +  83230942 CAGCATAAAGCAGAACGCCAG---AAAAAATACTCAAGAGGGGAT--GCTGCCCCA-AA-GGCTTGTATCTGAAAACACCAAAGATGGC-AAG---TA--TGGGCTCTGGTAACtgt---cc--tcacccaa---------ggtttttttt-aaaaggtattttggaaagagt-caaaaaagcaacatggt--aagcactacagacc--cctttcctcattcacatc-at---ttgtattcactattgtgttggtacacctgttttaccagccacaaaccc-atctacctccgctaacttgaaa-------gttctcta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80461078 274 +  99763055 CAGCATAAAGCAGAACGCCAG---AAAAAATACTCAAGAGGGGAT--GCTGCCCCA-AA-GGCTTGTATCTGAAAACACCAAAGATGGC-AAG---TA--TGGGCTCTGGTAACtgt---cc--tcacccaa---------ggtttttttt-aaaaggtattttggaaagagt-caaaaaagcaacatggt--aagcactacagacc--cctttcctcattcacatc-at---ttgtattcactattgtgttggtacacctgttttaccagccacaaaccc-atctacctccgctaacttgaaa-------gttctcta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        61227 274 -   1709092 CAGCATAAAGCATAACGCCAG---AAAAAATACTCAAGACGGGAC--GCTGCCCCA-AA-GGCTTGTGTCTGAAAACACCAAAGATGGC-AAG---TA--TGGGCTCTGGTAACtgt---cc--tcacccaa---------ggtttttttt-aaaaggtattttggaaagagt-caaaaaagtaacatggt--aagcactacagacc--cctttcctcattcacatc-at---ttgtattcactattgtgttggtacacctgtttcaccagccacaaaccc-atctacctccgctaacttgaaa-------gttctcta
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17220698 273 - 121039945 CAGCATAAAGCAGAAT-CCAG---AAAAAATACTCAAGAGTGGAT--GCTGCCCCA-AA-GGCTTGTGTCTGAAAACACCAAAGATGGC-AAG---TA--TGGGCTCTGGTAACtgt---cc--tcacccaa---------gg-ttttttt-aaaaggtgttttggaaagagt-caaaaaagcaacatggt--aaggactacagacc--ccttttctcattcacatcaat---ttgtattcactattgtgttggtacacctgtttcaccagccacaaaccc-atctacctccactagcttgaaa-------gttctcta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60901556 276 + 169600520 CAGCATAAAGCAGAATGCCAGA--AAAAAATACTCAAGAAGGGAT--GCTGCCCCA-AA-GGCTTGTGTCTGAAAACACcaaagatggc-aag---ta--tgggttctggtaactgt---cc--tcacccaa---------ggttttttct-aaaaggtattttggaaagagt-caaaaaagcaacatggt--aagcactacagacc--ccttttctcattcacatcaat---ttgtattcactattgtgttggtacacctgtttcaccagccacaaaccc-atctacctccactaacttgaaa-------gttctcta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108428293 276 - 171882078 CAGCATAAAGCAGAATGCCAGA--AAAAAATACTCAAGAAGGGAT--GCTGCCCCA-AA-GGCTTGTGTCTGAAAACACcaaagatggc-aag---ta--tgggttctggtaactgt---cc--tcacccaa---------ggttttttct-aaaaggtattttggaaagagt-caaaaaagcaacatagt--aagcactacagacc--ccttttctcattcacttcaat---ttgtattcactattgtgttggtacacctgtttcaccagccacaaaccc-atctacctccgctaacttgaaa-------gttctcta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        39043 276 -   2311642 CAGCATAAAGCAGAATGCCAGA--AAAAAATACTCAAGAAGGGAT--GCTGCCCCA-AA-GGCTTGTGTCTGAAAACACcaaagatggc-aag---ta--tgggttctggtaactgt---cc--tcacccaa---------ggttttttct-aaaaggtattttggaaagagt-caaaaaagcaacatggt--aagcactacagacc--ccttttctcattcacatcaat---ttgtattcactattgtgttggtacacctgtttcaccagccacaaaccc-atctacctccgctaacttgaaa-------gttctcta
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        36922 276 -   1987038 CAGCATAAAGCAGAATGCCAGA--AAAAAATACTCAAGAAGGGAT--GCTGCCCCA-AA-GGCTTGTGTCTGAAAACACcaaagatggc-aag---ta--tgggttctggtaactgt---cc--tcacccaa---------ggttttttct-aaaaggtattttggagagagt-caaaaaagcaacatggt--aagcactacagacc--ccttttctcattcacatcaat---ttgtattcactattgtgttggtacacctgtttcaccagccacaaaccc-atctacctccgctaacttgaaa-------gttctcta
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21117464 276 -  24206276 CAGCATAAAGCCGAATGCCAGA--AAAAAATACTCAAGAAGGGAT--GCTGCCCCA-AA-GGCTTGTGTCTGAAAACACcaaagatggc-aag---ta--tgggttctggtaactgt---cc--tcacccaa---------ggtttcttct-aaaaggtattttggaaagagt-caaaaaagtaacatggt--aagcactacagacc--ccgtttctcattcacatcaat---ttgtattcactattgtgttggtacacctgtttcaccagccacaaaccc-atctacctccactaacttgaaa-------gttccata
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        32627 276 -   1397330 CAGCATAAAGCAGAATGCCAGA--AAAAAATACTCAAGAAGGGAT--GCTGCCCCA-AA-GGCTTGTGTCTGAAAACACcaaagatggc-aag---ta--tgggttctggtaactgt---cc--tcacccaa---------ggttttttct-aaaaggtattttggagagagt-caaaaaagcaacatggt--aagcactacagacc--ccttttctcattcacatcaat---ttgtattcactattgtgttggtacacctgtttcaccagccacaaaccc-atctacctccgctaacttgaaa-------gttctcta
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        55967 274 -   1784207 CAGCATAAAGCAGAATGCCAG---AAAAAATACTCAAGAAGGGAT--GCTGCCCCA-AA-GGCTTGTGTCTGAAAACACCAAAGATGGC-AAA---TA--TGGGCTCTGGTAACtgt---cc--tcacccaa---------ggttt-ttct-aaaaggtattttggaaagagt-caaaaaagcaacatggt--aagcactacagagc--ccttttctcattcacaccaat---ttgtattcactattgtgttggtacacctgtttcaccagccacaaaccc-atctgcctccaccaacttgaaa-------gttctcta
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22258899 281 + 158406734 CAGCATTAAGCAGTCTGACAG---AAAAAATAGTCAAGAGGGGAT--GCTGCCCCCTAA-GGCTTGTGTCTGAAAACACCAAAGATGACAAAGTTATG--TGGGCTCTGGTAACtgt---cc--tcacccaa---------ggtttttttt-taaacatatgttgggaagagtaaaaaaaagcaacatggt--aagcactacagacc--cgtctcctcattcacatcaat---ttgtattcactattgtgttggtacatctgtttcaccagccacaaactc-atctacctccactaacttgaaa-------attctcta
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50489463 280 +  54856640 CAGCATAAAGCAGTCTGCCAGA--AAAAAATAGTCAAGAGGGGAT--GCTGCCCCA-AA-GGCTTGCATCTGAAAACACCAAAGATGACAAAG---TA--TGGGCTCTGGTAACtgt---cc--tcacccaa---------ggttttttttaaaaacgtatgttggatagagt-caaaaaagcaatgtggtaaaagcactacagacc--ccttttctcattcacatcaat---ttgtattcactattgtgttggtacatctgtttcaccagccacaaactc-atctacctccactaacttgaaa-------attctcta
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       632419 277 -   2910086 cagCATAAAGCAGTCTGCCAG---AAAAAATAGTCAAGAGGGGAT--GCTGCCCCA-AA-GGCTTGTGTCTGAAAACACCAAAGATGACAAAG---TA--TGGGCCCTGGTAACtgt---ca--tcacccaa---------ggttttttttttaaacatatgttggatagaat-caaaaaagcaacatggt--aagcactacagacc--ccttttctcattcacatcaac---ttgtattgactattgtgttggtacatctgttttaccagccacaaactc-atctacctccactaacttgaaa-------attctcta
i cebCap1.NW_016107610v1    C 0 I 335
s aotNan1.NW_018505940v1     40660844 277 +  42888418 CAGCATAAAGCAGTCTGCCAG---AAAAAATAGTCAAGAGGGGAT--GCTGCCCCA-AA-GGCTTGTGTCTGAAAACACCAAAGATGACAAAG---TA--TGGGCTCTGGTAACtgt---cc--tcacccaa---------ggttttttttttaaacatatgttgggaagagt-taaaaaagcaacatggc--aagcactacagacc--ccttttctcattcacatcaat---ttgtattcactattgtgctggtacatctgtttcgcaagccacaaactc-atctacctccactaacttgaaa-------attctcta
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             646328 213 -  36342412 CAACATAAAGCAGTAT--CAG----AAGAATTTTTAAGAAGTGAT--GCTGGCCCA-AAGGGCTTGCATCTGAGGGATGCAA--ATGAC-AAG---TA--TGGGCCATAAAAGCTGT---CT--TAATGCAA---------TGTTT------AAAA----------AAAATGT----------------GC--AA------------------------------TCCAT---TTGTATTCACTGTTGTGTCACTTTATCTGTTTTCACAGCCACAGATAT-AACAACCTCTAccaacctataa-------attctcta
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81366061 287 + 145441459 cATCACATAGCACAAAGACATATGAAAAAAATTGTAAAAGGAAATAAGTAGTTTAA-AG-GGGTCATAGCTAGGGACACTAAGGA---C-AAG---AA--TGGGCTATGGGAACTAT---GCTTTTACCCAAATTGGTTTTGATTTTGTTT-TGTAAGTGCTTTTTAAATAGC-CCCAAAC-CAACACAGT--AGTCAATACAGGTG--ATTTTCCTCCTTCCCTCCAGTTTATTATATTCAC--TTGTATTGATACA--TGTTTTGCCAGCTACAAATTCTATTTATCTCAGCTAACTTGCAA-------ACTGTTAG
i mm10.chr7                 I 980 I 23
s canFam3.chr3               54423028 253 +  91889043 CAGCATAAAGCAGCA---------GAGCAAAGCTCAAGAGAAGAT-GGCTGGCCCA-AAGGGCTTGTGTCTGAGGACACGGAGGACAAT-AAA---CA--TGTGCTACGGTAACTGT---CT--TCACCCTA---------AGTTT------AAAA------------AAAAA-AAAAAAAGCAAAATGGG--Tgccactgaaaacc--acttttctcattcacatcagt---ttctgttcactactgtgttggtacttctgtt---ctagccacaga-tc-atctacttc----aacatgcaatcttttttttttcta
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1818361 243 +   3943991 TAGCACAAAGCAGTATGCA-----GAAAAGTATTCAAGAGGAGAG------------AG--------------------CTAGGATGAC-AAA---TAACGGGGTTTTGATGActatgtcct--tcaaccaa---------ggttt------taaaagtgtatcggaaaaggt-c-aaagagcaacatag---gtgctctatagaccatctttttctcattcacatcaag---atgtatttactattgagttgatatatctgttctaccaaccaaaaacca-atctacctcaactagctt--ca-------atcctcta
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113283269 1627 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I

a score=119695.000000
s hg38.chr15_KI270850v1_alt    350840 11 +    430880 ctgtgcctaca
s panTro5.chr15              63504215 11 +  83230942 ctgtgcctaca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80461352 11 +  99763055 ctgtgcctaca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        61501 11 -   1709092 ctgtgcctaca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17220971 11 - 121039945 ctgtgcataca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60901832 11 + 169600520 ctgtgcctaca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108428569 11 - 171882078 ctgtgcctaca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        39319 11 -   2311642 ctgtgcctaca
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        37198 11 -   1987038 ctgtgcctaca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21117740 11 -  24206276 ctgtgcctaca
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        32903 11 -   1397330 ctgtgcctaca
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        56241 11 -   1784207 ctgtgcctacg
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22259180 11 + 158406734 gtgtgtccata
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50489743 11 +  54856640 gtgtgtctata
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40661121 11 +  42888418 gtgtgtctaca
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             646541 11 -  36342412 ccatgtctata
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81366371 11 + 145441459 TCTTGTCAACA
i mm10.chr7                 I 23 I 1
s canFam3.chr3               54423281 11 +  91889043 ccatgcccaca
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1818604 11 +   3943991 ccatgcccaca
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113283269 1627 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e cebCap1.NW_016107610v1       632696 335 -   2910086 I

a score=3085691.000000
s hg38.chr15_KI270850v1_alt    350851 251 +    430880 aaggtatctt--------gaggctt--------------------tgtcaaattcctgta----caaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatcctct-aatctggcaataaac----ctaagtag-aaaatggcatgaaaacccacgctggtcactaacgaac-tctacttcgttaagtgctcacagttcatggtcattcatctgttccgc-aatctggaccaggttcagttaagcttC-------------TAaca-------------------actt------a--------ctgaacgtct-agc-----acatgtcaaacactgtgttagaagcactt
s panTro5.chr15              63504226 251 +  83230942 aaggtatctt--------gaggctt--------------------tgtcaaattcctgta----caaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatcctct-aatctggcaataaac----ctaagtag-aaaatggcatgaaaacccacgttggtcactaacgaac-tctacttcgttaagtgctcacagttcatggtcattcatctgttccgc-aatctggaccaggttcagttaagcttC-------------TAaca-------------------actt------a--------ctgaacgtct-agc-----acatgtcaaacactgtgttagaagcactt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80461363 251 +  99763055 aaggtatctt--------gaggctt--------------------tgtcaaattcctgta----caaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatcctct-aatctggcaataaac----ctaagtag-aaaatggcatgaaaacccacgttggtcactaacgaac-tctacttcgttaagtgctcacagttcatggtcattcatctgttccgc-aatctggaccaggttcagttaagcttC-------------TAaca-------------------actt------a--------ctgaacgtct-agc-----acatgtcaaacactgtgttagaagcactt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        61512 255 -   1709092 aaggtatctt--------gaggctt--------------------tgtcaaattcctgta----caaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatcctct-aatctggcaataaacctgtctaagtag-aaaatggcatgaaaacccacgttggtcacgaacgaac-tctacttcgttaaatgctcacagttcatggtcattcatctgttccgc-aatctggaccaggttcagttaagcttC-------------TAaca-------------------actt------a--------atgaacgtct-agc-----acatgccaaacactgtgttagaagcactt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17220982 255 - 121039945 aaggtatcct--------gaggctt--------------------tgtcaaattcctgta----caaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatccttt-aatctggcaataaacctgtctaagtag-aaaatggcatgaaaacccacgttggtcgctaatgaac-tctacttccttaagtgctcacagttcatggtcattcatctgttctgc-aatctggaccaggttcatttaagcttC-------------TAaca-------------------actt------a--------ctgaacatct-agc-----acatgccaaacactgtgttagaagcactt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60901843 261 + 169600520 aaggtatctt--------gaggctt--------------------tgtcaaattcctgta---ccaaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatcctct-aatctagcaataaacttgcctaagtag-aaaatggcatgacaactcaagttggtcactaacgaac-tctacttccttaagtgttcacagttcatgatcattcatctgttctgc-aatctggaccaggttcagttaagcttC-------------TAaca-------------------actt------a--------ctgaacgtct-agcatgtgatgtgccaaacactgtgttagaagcactt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108428580 261 - 171882078 aagatatctt--------gaggctt--------------------tgtcaaattcctgta---ccaaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatcctct-aatctagcaataaacttgcctaagtag-aaaatggcatgacaactcaagttggtcactaacgaac-tctacttccttaagtgttcacagttcatgatcattcatctgttctgc-aatctggaccaggttcagttaagcttC-------------TAaca-------------------actt------a--------ctgaacgtct-agcatgtgatgtgccaaacactgtgttagaagcactt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        39330 261 -   2311642 aagatatctt--------gaggctt--------------------tgtcaaattcctgta---ccaaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatcctct-aatctagcaataaacttgcctaagtag-aaaatggcatgacaactcaagttggtcactaacgaac-tctacttccttaagtgttcacagttcatgatcattcatctgttctgc-aatctggaccaggttcagttaagcttC-------------TAaca-------------------actt------a--------ctgaacgtct-agcaagtgatgtgccaaacactgtgttagaagcactt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        37209 261 -   1987038 aagatatctt--------gaggctt--------------------tgacaaattcctgta---ccaaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatcttct-aatctagcaataaacttgcctaagtag-aaaatggcatgacaactcaagttggtcactaacgaac-tctacttccttaagtgttcacagttcatgatcactcatctgttctgc-aatctggaccaggttcagttaagcttC-------------TAaca-------------------actt------a--------ctgaacgtct-agcatgtgatgtgccaaacactgtgttagaagcactt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21117751 261 -  24206276 aagatatctt--------gaggctt--------------------tgtcaaattcctgta---ccaaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatcctct-aatctagcaataaacctgcctaagtag-aaaatggtatgacaacccaagttggtcactaacgaac-tctacttccttaagtgttcacagttcatgatcattcatctgttctgc-aatctggaccaggttcagttaagcttc-------------taaca-------------------actt------a--------ctgaacgtct-agcatgtgatgtgccaaacactgtgttagaagcactt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        32914 261 -   1397330 aagatatctt--------gaggctt--------------------tgacaaattcctgta---ccaaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatcctct-aatctagcaataaacttgcctaagtag-aaaatggcatgacaactcaagttggtcactaacgaac-tctacttccttaagtgttcacagttcatgatcactcatctgttctgc-aatctggaccaggttcagctaagcttC-------------TAaca-------------------actt------a--------ctgaacgtct-agcatgtgatgtgccaaacactgtgttagaagcactt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        56252 269 -   1784207 aagatatctt--------gaggctt--------------------tgtcaaattcctgta---ccaaaactaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatcctct-aatctagcaataaacctgcctaagtag-aaaatggcatgacaacccaagttggtcactaacaaac-tctacttccttaagtgctcacagttcatgatcattcatctgttctgc-aatctggaccaggttcagttaagcttC-------------TAACA-------------------ACTT------ACTGAACGTCTGAACGTCT-AGCATGTGAtgtgccaaacactgtgttagaagcactt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22259191 257 + 158406734 aagatatctt--------gaggctt--------------------tgtcaaattcctgta---ccaaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatctttt-aatcggacaataaacctgcctaagcag-aaaacagcatgacaacccacgttggtcactaatgaac-tctacttccttaagggctcacagttcatgatggttcatctgttctacaaatctggaccaggttcagttaagctac-------------tacca-------------------actt------a--------ctgaacttct-ggc-----atgcgccaagcactgtgttagaagcatct
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50489754 257 +  54856640 aaggtatctt--------gaggctt--------------------tgtcaaattcctgta---ccaaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatccttt-aatctgacaataaacctaccaaagcag-aaaacagcatgacaacccatgttggtccctaacaaac-tctacttccttaagtgctcacagttcatggtggttcatctcttctacaaatctggaccaggttcacttaagctat-------------tacca-------------------actt------a--------gtgaacttct-ggc-----atgcgccaagcactgtgttagaagcattt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       633031 256 -   2910086 aagatatctt--------gaggctt--------------------tgtcaaattcctgta---ccaaagctaagaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatccttt-aatctgacaataaacctacctaagcag-aaaac-gcgtgacaacccacactagtcactaacaaac-tctacttccttaagtgctcacagttcatggtggttcatctgttctacaaatctggaccaggttcagttaagctac-------------tacca-------------------actt------a--------gtgaacttct-ggc-----atgcgccaaccactgtgttagaagcattt
i cebCap1.NW_016107610v1    I 335 C 0
s aotNan1.NW_018505940v1     40661132 257 +  42888418 aagatatctt--------gaggctt--------------------tgccaaatttctgta---ccaaagctaggaatt-----------atctctgt---------------------------------------------------------------------------------------agtgatccttt-aatctgacaataaacctgcctaagtag-aaaacagcatgacaacccacgttggtcactaacgaac-tctacttccttaagtgctcacagttcatggtggttcatctgttctacaaatctggaccaggttcagttaagctac-------------tacca-------------------actt------a--------ctgaacttct-gac-----atgcgccaagcactgtgttagaagcattt
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             646552 266 -  36342412 aagatacctt--------gaggctt--------------------tgttaaattcctggg---tgaaagctaggaatt-----------atctccac---------------------------------------------------------------------------------------agcactgttct-aatctggtaataagcctgtctaaacag-aaaatgGCAAGTAAA-----GTTAGCCACTCATGAACTTCTACTTCCTCAAGTGCTCACGATTC-----CATCC-TCCATCCTGC-AATCTAGATGAAGTTCAGTTAAGCGCCTACAATTCACtaatagca-------------------acttccattca--------ctgaacatctaagc-----atgtgccagacattgtgttagaagcacct
i otoGar3.GL873530          C 0 I 141
s mm10.chr7                  81366383 358 + 145441459 CAGGAATTTTATCTACAGAAAGCTTCTACTATGAGCATggcctgatggcatattcccttaatcccaagacttggaggtgaggcaggtggatctctgtgagttccaggacagtctagtctacacagcaagctctaagttagttaaagctacatagtaagatccatcttcctcaaacaccaacaaaaGGAATCCTCT-ACTATGGTAACAAGCCTATCCAAATAG-AAAATGGCATAACAACCCA-------CACTAGTTGAT-TCCACTTTCTCAAGAG----------ATGGTCAGTCATCTATTTTAT-GACTTGGACCAGGTTCAGTTAAGTTCC-------------T-----------------------ACTA------A--------CAGCAACTTT-TCC-----ACTCACTGAACA------TCAAAACACAT
i mm10.chr7                 I 1 I 2
s canFam3.chr3               54423292 241 +  91889043 aaaacatctt--------gatgctc--------------------tgtcaaattcctgtg---tcaaagctatgaatt-----------atgactat---------------------------------------------------------------------------------------agcattcttctcaatgtgataataagcctgtctaaaacg-aaaatgtcatgactatccatgttggccactaatgaac-tctacttccttaagtgcccgtggttcacagtcaatcatctcttctac-gatctgGACCAGGTTca-----------------------t-------------------------tt------a--------ctgtacatat-agc-----acatgtcagatgctttgttagaagcactt
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1818615 275 +   3943991 aagataactt--------gaaactt--------------------tgtcagacgcctgtg---tgaaagtta-gagct-----------acgtctat---------------------------------------------------------------------------------------agcattcctct-aaactggttataagcctgtctaaatagaaaaatggtgtaacaacccatgctggaccctaatgaac-tctacttccttaaatactcatagttcataattaatcatccattcttc-aatatggatcaggttcaatcaagctCT-------------TATCATTCACAaatagcaacttctattt------a--------ttaaacacct-agc-----atatgccagacaccgtgttagaagcactt
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113283269 1627 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I

a score=754965.000000
s hg38.chr15_KI270850v1_alt    351102 59 +    430880 taggtaaacagt-cttcaccaaatcct-aagaagtggctgttactactgcatcttaacaaa
s panTro5.chr15              63504477 59 +  83230942 taggtaaacagt-cttcaccaaatcct-aagaagtggctgttactactgcatcttaacaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80461614 59 +  99763055 taggtaaacagt-cttcaccaaatcct-aagaagtggctgttactactgcatcttaacaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        61767 59 -   1709092 taggtaaacagt-cttcaccaaatcct-aagaagtggctgttactactgcatcttaacaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17221237 59 - 121039945 taggtaaacagt-cttcaccaaatcct-aagaagtggctattactactgcatcttaacaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60902104 59 + 169600520 taggtaaacagt-cttcaccaaatcct-aagaagtggctattattactgtatcctaacaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108428841 59 - 171882078 taggtaaacagt-cttcaccaaatcct-aagaagtggctattattactgtatcctaacaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        39591 59 -   2311642 taggtaaacagt-cttcaccaaatcct-aagaagtggctattattactgtatcctaacaaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        37470 59 -   1987038 taggtaaacagt-cttcaccaaatcct-aagaagtggctattattactgtatcctaacaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21118012 59 -  24206276 taggtaaacagt-cttcaccaaatcct-aagaagtggctgctattactgtatcctaacaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        33175 59 -   1397330 taggtaaacagt-cttcaccaaatcct-aagaagtggctattattactgtatcctaccaaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        56521 59 -   1784207 taggtaaacagt-cttcaccaaatcct-aagaagtggctattattactgtatcctaacaaa
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22259448 59 + 158406734 taggtaaacagt-cttcaccaaatcct-aacaagtggatattattactgcatcttaacaaa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50490011 53 +  54856640 taggtaaacagt-cttcaccaaatcct----aagtaga---tattactgcatcctaacaaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       633287 59 -   2910086 tagctaaacagt-cttcaccaagtcct-aagaagtggatattattactgcatcttaacaaa
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40661389 59 +  42888418 taggtaaacagt-cttcaccaaatcct-aagaagtggatattattactgcatcttaacaaa
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             646959 59 -  36342412 taggtaaataatacttcaccaaatccaaaaaaagtaggtagtagtgct--attttaacaaa
i otoGar3.GL873530          I 141 C 0
s mm10.chr7                  81366743 52 + 145441459 CAGATATGAATC-TTTCCCTAAATCCT-AATAAG-------TATTAGCCTATCTTAACAAA
i mm10.chr7                 I 2 I 49
s canFam3.chr3               54423533 59 +  91889043 taggtaagtaat-cttcactacattct-aagacatgagtactattaccccatctcaataaa
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1818890 56 +   3943991 gaggtaaaccat-cttcaccaaatcct-aagaagtagg---tgttactccattttaacaac
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113283269 1627 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I

a score=886227.000000
s hg38.chr15_KI270850v1_alt    351161 80 +    430880 aggaaaccaagactt--ggggcagtc-agtttgtaaaag-----taacagctaatgagtgaca----gagact--ggatgctttcccactccaa
s panTro5.chr15              63504536 80 +  83230942 aggaaaccaagactt--ggggcagtc-agtttgtaaaag-----taacagctaatgagtgaca----gagact--ggattctttcccactccaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80461673 80 +  99763055 aggaaaccaagactt--ggggcagtc-agtttgtaaaag-----taacagctaatgagtgaca----gagact--ggattctttcccactccaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        61826 80 -   1709092 tggaaaccaagactt--ggggcagtc-agtttgtaaaag-----taacagctaatgagtgaca----gagact--ggattctttcccactccaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17221296 80 - 121039945 aggaaaccaagactt--ggggcagtc-agtttgtaaaag-----tagcagctaatgagtgaca----gagact--ggattctttcccactccaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60902163 80 + 169600520 aggaaaccaagactt--ggggcagtc-agtctgtaaaag-----taacagctaatgagtgaca----gagact--ggattcTTTCCCACTCCAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108428900 80 - 171882078 aggaaaccaagactt--ggggcagtc-agtctgtaaaag-----taacagctaatgagtgaca----gagact--ggattctttcccactccaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        39650 78 -   2311642 aggaaaccaagactt--ggggcagtc-agtctgtaaaag-----taacagctaatgagtg--a----gagact--ggattctttcccactccaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        37529 80 -   1987038 aggaaaccaagactt--ggggcagtc-agtctgtaaaag-----taacagctaatgagtgaca----gagact--ggattctttcccactccaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21118071 80 -  24206276 aggaaaccaagactt--ggggcagtc-agtctgtaaaag-----taacagctaatgagtgaca----gagact--ggattcTTTCCCACTCCAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        33234 80 -   1397330 aggaaaccaagactt--ggggcagtc-agtctgtaaaag-----taacagctaatgagtgaca----gagact--ggattctttcccactccaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        56580 80 -   1784207 aggaaaccaagactt--ggggcagtc-agtgtgtaaaag-----taacagctaatgagtgaca----gagact--ggattctttcccactccaa
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22259507 86 + 158406734 gggaaaccaagactt--ggggcagtcaagtttgtaaaagt----taacagctaataagtgacagagtgagact--ggattctttcccattccaa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50490064 83 +  54856640 aggaaaccaaaactt--ggggcagtcaagtttgtaaaagt----taaca---aataaatgacggagtgagact--ggattcttttccactccaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       633346 84 -   2910086 aggaaaccaagactt--ggggcagtcaagtttgtaaaagt----taacagctaataagtgac--agtgagact--ggattctttcccactccaa
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40661448 86 +  42888418 aggaaaccaagactt--gaggcagtcaagtttgtaaaagt----taacagctaataagtgacagagcgagact--ggattctttcccactccaa
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             647018 79 -  36342412 aggaaaccaaggcttaggagacagcc-aatt-----aag-----taacAGCTGATGAGTGACA--GTGGAACT--CAATTCTTTCCCACACCAA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54423592 74 +  91889043 ---------aggctcaaagggcaagt--gtttgtgtaag-----taacagctagtcagtgacagggtgggacc--caattc--tctgattctga
i canFam3.chr3              C 0 I 18
s dasNov3.JH570731            1818946 85 +   3943991 agaaaagcgtgactc--aga--aggt-aatttgtgtaaggtaaattacagctagtgaataaga----gtggcttccaattctttctgaccccaa
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113283269 1627 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e mm10.chr7                  81366795 49 + 145441459 I

a score=387698.000000
s hg38.chr15_KI270850v1_alt    351241 54 +    430880 -----------------gt----------------ACCATTCACTAGCTAC---TTT---------TTTTT-----TTT-------TTTTT------AATCTTTA---G-GACTTCACATC
s panTro5.chr15              63504616 55 +  83230942 -----------------gt----------------ACCATTCACTAGCTAC---ttt---------ttttt-----ttt-------ttttt-----tAATCTTTA---G-GACTTCACATC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80461753 54 +  99763055 -----------------gt----------------ACCATTCACTAGCTAC---TTT---------TTTTT-----TTT-------TTTTT------AATCTTTA---G-GACTTCACATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        61906 54 -   1709092 -----------------gt----------------ACCATTCACTAGCTAC---TTT---------TTTTT-----TTT-------TTTTT------AATCTTTA---G-GACTTCACATC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17221376 60 - 121039945 -----------------gt----------------ACCATTCACTAGCttt---ttt---------ttttt-----ttt-------tttttttttttAATCTTTA---G-GACTTCACATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60902243 52 + 169600520 -----------------GT----------------ACCATTCACTAGCTAC-----T---------TTTTT-----TTT-------TTTTA------AATCTTTA---G-AACTCCACATC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108428980 52 - 171882078 -----------------gt----------------ACCATTCACTAGCTAC-----T---------TTTTT-----TTT-------TTTTA------AATCTTTA---G-AACTCCACATC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        39728 53 -   2311642 -----------------gt----------------ACCATTCACTAGCTAC----TT---------TTTTT-----TTT-------TTTTA------AATCTTTA---G-AACTCCACATC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        37609 57 -   1987038 -----------------gt----------------ACCATTCACTAGCTACtttttt---------ttttt-----ttt-------ttttA------AATCTTTA---G-AACTCCACATC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21118151 55 -  24206276 -----------------GT----------------ACCATTCACTAGCTACtttttt---------ttttt-----ttt-------ttt--------AATCTTTA---G-AACTCCACATC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        33314 57 -   1397330 -----------------gt----------------ACCATTCACTAGCTACtttttt---------ttttt-----ttt-------ttttA------AATCTTTA---G-AACTCCACATC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        56660 53 -   1784207 -----------------gt----------------ACCATTCACTAGCTAC----TT---------TTTTT-----TTT-------TTTTT------AATCTTTA---G-AACTCCACATC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22259593 47 + 158406734 -----------------gt----------------ACCATTCATTCACTAG---CTAG----------------------------TTTTT------AATCTTTA---G-GACTTCACATC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50490147 69 +  54856640 -----------------gt----------------ACTATTCACTAGTTTT---TTTGTTGTTGT-TGCTG-----TTTGTTTGTTTTTTT------AATCTTTA---G-GACTTCACATC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       633430 63 -   2910086 -----------------gt----------------accaTTCACTAGCTAA---TTTTTTGTTTTGTATTG-----TTT-------TGTTT------AATCTTTA---G-GACTTTacatc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40661534 60 +  42888418 -----------------gt----------------ACCATTCACTAGCTAG---TTT---------TTTTG-----tttgtttgt-ttttt------aatcttta---g-gatttcacatc
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             647097 64 -  36342412 -----------------GCTTAATCTTCTAAGTAAACCATTCACTAGCTAC---TTT---------A-------------------AAAAA------AATACATA---GTTACCTCACATC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81366844 44 + 145441459 -----------------GC----------------ATCATTCACTAGCTAC---AGC----------------------------------------AATCATTACTGA-GACCTTGTGTC
i mm10.chr7                 I 49 C 0
s canFam3.chr3               54423684 54 +  91889043 -----------------GT----------------ACCATTTACTAGCTAT---TTT---------TTTTT-----TTC-------CTTTT------AATACTTA---G-GACTTTACATC
i canFam3.chr3              I 18 C 0
s dasNov3.JH570731            1819031 62 +   3943991 gcttcatcttctgtagcat----------------accatcc-cAAGCTAC---TTT---------TTCTTTACTCTCT-------TTTtt------cttcttc-----------------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113283269 1627 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I

a score=369525.000000
s hg38.chr15_KI270850v1_alt    351295 29 +    430880 TGTTTGTCTTC----ACATTCCTCAGCACTTTT
s panTro5.chr15              63504671 29 +  83230942 TGTTTGTCTTC----ACATTCCTCAGCACTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80461807 29 +  99763055 TGTTTGTCTTC----ACATTCCTCAGCACTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        61960 29 -   1709092 TGTCTGTCTTC----ACATTCCTCAGCACTTTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17221436 29 - 121039945 TGTTTGTCTTC----ACATTCCTCAGCACTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60902295 29 + 169600520 TGTTTGTCTTC----ACGTTCCTCAGCACCTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108429032 29 - 171882078 TGTTTGTCTTC----ACGTTCCTCAGCACCTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        39781 29 -   2311642 TGTTTGTCTTC----ACGTTCCTCAGCACCTTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        37666 29 -   1987038 TGTTTGTCTTC----ACGTTCCTCAGCACCTTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21118206 29 -  24206276 TGTTTGTCTTC----ACGTTCCTCAGCACCTTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        33371 29 -   1397330 TGTTTGTCTTC----ACGTTCCTCAGCACCTTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        56713 29 -   1784207 TGTTTGTCTTC----ACGTTCCTCAGCACCTTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22259640 32 + 158406734 TGTTTGTCTTCACATACATTCCT-GGCACCTTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50490216 28 +  54856640 TGTTTGTCTTC----ACGTTCCT-GGCACCTTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       633493 28 -   2910086 tgtttgtcttc----acgttcct-ggcaccttt
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40661594 28 +  42888418 tgtttgtcttc----acgttcct-ggcaccttt
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113284896 28 + 116334831 tgtttgtcttc----atgttcct-ggcacttct
i micMur3.chr9              I 1627 C 0
s otoGar3.GL873530             647161 28 -  36342412 TGTTTGTCTTC----ATGTTACT-GGCACTTTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81366888 28 + 145441459 TACTTATTTTC----ATGTCCTT-AGCACATCT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54423738 28 +  91889043 TTTTTATCTTC----CTGTTATC-GACACTTTT
i canFam3.chr3              C 0 I 191
s dasNov3.JH570731            1819093 23 +   3943991 ----tgttttt------gttagtcagaacctcc
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        28518 2873 +     80520 I

a score=2105377.000000
s hg38.chr15_KI270850v1_alt    351324 166 +    430880 CC-------TTTGTCTGAA--TCCTGTAAGACCATCAACTAC-----------------------------AGACTACTGA--------TCTTCCCTACCAGAAGTCCCTGCTTTAGGACCTAGAGTATTTGGGTCTT-AAATC-TATCT-AGGGCCTTGCCACTACAggaactcattaaaaatgcattttgggtcccaccccagac---ctgaatca
s panTro5.chr15              63504700 166 +  83230942 CC-------TTTGTCTGAA--TCCTTTAAGACCATCAACTAC-----------------------------AGACTACTGA--------TCTTCCCTACCAGAAGTCCCTGCTTTAGGACCTAGAGTATTTGGGTCTT-CAATC-TATCT-AGGGCCTTGCCACTACAggaactcattaaaaatgcactttgggtcccaccccagac---ctgaatca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80461836 166 +  99763055 CC-------TTTGTCTGAA--TCCTTTAAGACCATCAACTAC-----------------------------AGACTACTGA--------TCTTCCCTACCAGAAGTCCCTGCTTTAGGACCTAGAGTATTTGGGTCTT-CAATC-TATCT-AGGGCCTTGCCACTACAggaactcattaaaaatgcactttgggtcccaccccagac---ctgaatca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        61989 166 -   1709092 CC-------TTTGTCTGAA--TCCTGTAAGACCATCAACTAC-----------------------------AGACTACTGA--------TCTTCCCTACCAGAAGTCCCTGCTTTAGGACCTAGAGTATTTGGGTCTT-AAATC-TATCT-AGGGCCTTGCCACTACAggaactcattaaaaatgcattttgggtcccaccccagac---ctgaatca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17221465 167 - 121039945 CC-------TTTGTCTGAA--TCCTGTAAGACCATCAACTAC-----------------------------AGACTACTGA--------TCTTCCCTACCAGAAGTCCCTGCTTTAGGACCTAGAGTATTCGGGTCTT-AAATCTTATCT-AGGGCCTTGCCACTACAggaactcattaaaaatgcattttgggtcccaccccagac---ctgaatca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60902324 167 + 169600520 CC-------TTTGTCTGAA--TCCTGTAAGACCATCAACTAC-----------------------------AGACTAGTGA--------TGTTGCCTACCAGAAGTCCCTGCTTTAGGACCTAGAATATTAGGGTCTT-AAATCTTATCT-AGGGCCTTGCCACTACAggaactcattaaaaatgcattttgggtcccaccccagac---ctgaatca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108429061 167 - 171882078 CC-------TTTGCCTGAA--TCCTGTAAGACCATCAACTAC-----------------------------AGACTAGTGA--------TGTTGCCTACCAGAAGTCCCTGCTTTAGGACCTAGAATATTAGGGTCTT-AAATCTTATCT-AGGGCCTTGCCACTACAggaactcattaaaaatgcattttgggtcccaccccagac---ctgaatca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        39810 167 -   2311642 CC-------TTTGTCTGAA--TCCTGTAAGACCATCAACTAC-----------------------------AGACTAGTGA--------TGTTGCCTACCAGAAGTCCCTGCTTTAGGACCTAGAATATTAGGGTCTT-AAATCTTATCT-AGGGCCTTGCCACTACAggaactcattaaaaatgcattttgggtcccaccccagac---ctgaatca
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        37695 167 -   1987038 CC-------TTTGTCTGAA--TCCTGTAAGACCATCAACTAC-----------------------------AGACTAGTGA--------TGTTGCCTACCAGAAGTCCCTGCTTTAGGACCTAGAATATTAGGGTCTT-AAATCTTACCT-AGGGCCTTGCCACTACAggaactcattaaaaatgcattttgggtcccaccccagac---ccgaatca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21118235 167 -  24206276 CC-------TTTGTCTGAA--TCCTTTTAGACCATCAACTAC-----------------------------AGACTAGTGA--------TCTTGCCTACCAGAAGTCCCTGCTTTAGGACCTAGAGTATTAGGGTCTT-AAATCTTATCT-AGGGCCTTGCCACTACAggaactcattaaaaatgcattttgggtcccaccccagac---ctgaatca
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        33400 167 -   1397330 CC-------TTTGTCTGAA--TCCTGTAAGACCATCAACTAC-----------------------------AGACTAGTGA--------TGTTGCCTACCAGAAGTCCCTGCTTTAGGACCTAGAATATTAGGGTCTT-AAATCTTATCT-AGGGCCTTGCCACTACAggaactcattaaaaatgcattttgggtcccaccccagac---ccgaatca
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        56742 167 -   1784207 CC-------TTTGTCTGAA--TCCTGTAAGACCATCAACTAC-----------------------------AGACTAGTGA--------TCTTGCCTACCAGAAGTCCCTGCTTTAGGACCTAGAGTATTAGGGTCTT-AAATCTTATCT-AGGGCCTTGCCACTACAggaactcattaaaaatgcattttgggtcccaccccagac---ctgaatca
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22259672 164 + 158406734 CC-------TTTGTCTGAA--TCCTTTAAGACCATGAACT-------------------------------AGACTAGTGA--------TGTCACCTACCAGAAGTTCCTGCTTTAGGACTTAGAATATTCGGGTCTT-AAATCTTATCT-AGGgcctcaacactataggaactcattaaaaatgcattttgggtcccacccgaga----ctgactca
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50490244 166 +  54856640 CC-------TTTGTCTGAA--TCCTTTAAGACCGT-AACTAC-----------------------------AAACTAGTGA--------TGTCACCTACCAAAAGTTCCTGCTTTAGGACCTAGAATATTTGAGTCTT-AAATCTTACCT-AGGgcctcgacaccacaggaactcattaaaaatgcattttgggtcccacccgagac---ctgactca
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       633521 165 -   2910086 cc-------tttgtctgaa--tcctttaagatcat-aaatac-----------------------------aaactagtga--------tgtcacctaccagaagttcctgctttaggacctagaatatTCAGGTCTT-AAATCTTATCT-AGGGCCTCGAcaccataggaactcattaaaaatgcattctgggtcgc-ctcgagac---ctgactca
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40661622 168 +  42888418 cc-------tttgtctgaa--tcctttaagaccatgaactac-----------------------------agactagtga--------tgtcatctaccagaagttcctgctttaggacctagaatattcgGGTCTT-AAATCTTATCTGAGGGCCTTGAcaccataggaactcattaaaaatgcattttgggtcccacctgagac---ctgactca
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113284924 167 + 116334831 cc-------tttgttcaca--tcctttaagaccactgactac-----------------------------agactagtga--------tctcacctaccacaagtcagtgtcttgggacctataacattcaggtctt-aaaacttATCT-AGGGCCTTTCCACTGtaggaactcattaaaaatgcatcttgggccctatcccagtt---ctaactca
i micMur3.chr9              C 0 C 0
s otoGar3.GL873530             647189 168 -  36342412 CT-------TTTGTTCAAA--CCCTTTCAGACTATTGACTAC-----------------------------AGACTAGCAA--------TCTCACCTACTAGAAGACAGCACATAAGGATCTATAATATTCAGGTCTTAAAAACTTATCT-GGGACCTTGACACTGtaggaacttattaaaaattcatcttgggtcctaccccagtc---ctaaatca
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81366916 157 + 145441459 CCTT-----TTTGTTCAAA--TCTTTTAAGATCATCAACCAC-----------------------------AGATGATAAA--------TCTCACCTACCAGAAGTTCAGG-----GGACCTAAAA-AGAAAGGTCTC-AAAAGTTAGGG-ATGGCCATG-----Gtaagaactcatt-aaaatgtacctaaaacaccacttgaggt---ctgaacca
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54423957 209 +  91889043 CT-------TTTGTTCAAAATTCCTTTAAGACCATCAACTACTaaaaaaaaaaaaaaaaaaaaaaGACCATCAACTACTGACAAAGCTCTCCCTCCTTCCAAAAGTCAGTGCCTTGAGATCTAAATCATTCAGGCCAT-GAAACTTCTCT-AGGGCCTTGCCACTGtaggagctcattaaaaatgcatcttgggccccactccagacccactgaatca
i canFam3.chr3              I 191 C 0
s dasNov3.JH570731            1819116 107 +   3943991 ---tatctgcttgtcttca--gtttcctggaacctcaccttt--------------------------------------g--------ttt----------aaattc---ctttaagaccaccagtg--caggtctt-agc---tacca-gaggcc------------------------agtgc-------------cttgagac---ctgaatca
i dasNov3.JH570731          C 0 I 240
e proCoq1.NW_012142813v1        28518 2873 +     80520 I

a score=1261498.000000
s hg38.chr15_KI270850v1_alt    351490 105 +    430880 gaatctgcatttttaa-aagatccccagga-gatgtgtatac-------acatt-aagttttagaagcactgATCCATACAAA---CCCGAGGCTTGCTACTTCAAATTCCTAATCA--A
s panTro5.chr15              63504866 105 +  83230942 gaatctgcatttttaa-aagatccccagga-gatgtgtatac-------acatt-aagttttagaagcactgATCCATACAAA---CCCGAGGCTTGCTACTTCAAATTCCTAATCA--A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80462002 105 +  99763055 gaatctgcatttttaa-aagatccccagga-gatgtgtatac-------acatt-aagttttagaagcactgATCCATACAAA---CCCGAGGCTTGCTACTTCAAATTCCTAATCA--A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        62155 105 -   1709092 gaatctgcatttttaa-aagatacccagga-gatgtgtatac-------acatt-aagttttagaagcactgATCCATACAAA---TCCGAGGCTTGCTACTTCAAATTCCTAATCA--A
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17221632 105 - 121039945 gaatctgcatttttaa-aagatccccagga-gatatgtatac-------acatt-aagttttagaagcactgATCTATACAAA---CCCGAGGCTTGCTACTTCAAATTCCTAATCA--A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60902491 105 + 169600520 gaatctgcatttttaa-aagatccccagga-gatgtgtatac-------acatt-aagtttgagaagcactgACCCATACAAA---CCCAAAGCTTGCTACTTCAAATTCCTAATCA--A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108429228 105 - 171882078 gaatctgcatttttaa-aagatccccagga-gatgtgtatac-------acatt-aagtttgagaagcactgACCCATACAAA---CCCAAAGCTTGCTACTTCAAATTCCTAATCA--A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        39977 102 -   2311642 gaatctgcatttttaa-aagatcccc---a-gatgtgtatac-------acatt-aagtttgagaagcactgACCCATACAAA---CCCAAAGCTTGCTACTTCAAATTCCTAATCA--A
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        37862 105 -   1987038 gaatctgcatttttaa-aagatccccagga-gatgtgtatac-------acatt-aagtttgagaagcactgACCCATACAAA---CCCAAGGCTTGCTACTTCAAATTCCTAATCA--A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21118402 105 -  24206276 gaatctgcatttttaa-aagatccccagga-gatgtgtatac-------acatt-aagtttgagaagcactgACCCATACAAA---CCCAAGGTTTGCTACTTCAAATTCCTAATCA--A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        33567 105 -   1397330 gaatctgcatttttaa-aagatccccagga-gatgtgtatac-------acatt-aagtttgagaagcactgACCCATACAAA---CCCAAGGCTTGCTACTTCAAATTCCTAATCA--A
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        56909 105 -   1784207 gaatcttcatttttaa-aagatccccagga-gatgtgtatac-------acatt-aagtttgagaagcactgGCCCATACAAA---TTCAAGGCTTGCTACTTCAAATTCCTAATCA--A
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22259836 106 + 158406734 gaatctccattttaaa-aagatccctagga-gatttgtgtac-------acattcaagtttaagaagtactTATCCATGCAAA---CCTGAGGCCTGCTACTTCAAATTCCTAATCA--A
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50490410  96 +  54856640 gaatctccattcttaa-aagatccccagga-gatttgtgtac-------acatt-aagtttgagaagcactgATCCAGGCAAA---CCTGAGGCCTGCTACTTCGAATT-----------
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       633686 105 -   2910086 gaatctccattttaaa-aagatccccagga-gatttgtgtac-------acatt-aagtttgagaagtactgATCCATGCAAA---CCTGAGGCCTGCTACTTCAAATTCCTCATCA--A
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40661790 105 +  42888418 gaatctccattttaaa-aagatccccagga-gatttgtgtac-------acatt-aagtttgagaagcactgATCCATGCAAA---CCTGAGGCCTGCTACTTCAAATTCCTAATCA--A
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113285091 106 + 116334831 gaatctacattttaac-aagatctccagga-gatttgtatac-------atatcaaaatttgaaaagcattAATCTACAAAAA---CCTAAAGCTTGTTACTTCAAATTTCTAATCA--A
i micMur3.chr9              C 0 C 0
s otoGar3.GL873530             647357  62 -  36342412 gaatctgcattttaac-aagatctctagg-----------AC-------ATA--------TGAAAAGCATTAATCTAGAAAAA---TCTAAA----------------------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81367073 114 + 145441459 gaatctgcattttaac-aagatccctgtgaggatagatacactaaagATACACTAAAGCTTTGAAAAC-----TCCAGCCAAAATCCCTATGTTTTATTACTTTAAGTTCCTAATTACTA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54424166 107 +  91889043 gaacctgcattttgaacaagatccccagga-ggtttgtgtgc-------acattaaagtttgagaagcactCATCTAGAAAAA---CCTAAGGCTTGCTACGTCAAGCTTCTAATCA--G
i canFam3.chr3              C 0 I 45
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e dasNov3.JH570731            1819223 240 +   3943991 I

a score=486033.000000
s hg38.chr15_KI270850v1_alt    351595 38 +    430880 TTGCCTTATCATACCCAAACATCTTTCATATATAATTA
s panTro5.chr15              63504971 38 +  83230942 TTGCCTTATCATACCCAAACATCTTTCATATATAATTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80462107 38 +  99763055 TTGCCTTATCATACCCAAACATCTTTCATATATAATTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        62260 38 -   1709092 TTGCCTTATCATACCCAAACATCTTTCATATATAATTA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17221737 38 - 121039945 TTGCCTTATCACATCCAAACATCTTTCATATATAATTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60902596 38 + 169600520 TTGCCTTATCACACCCAAACATCTTTCATACATAATTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108429333 38 - 171882078 TTGCCTTATCACACCCAAACATCTTTCATACATAATTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        40079 38 -   2311642 TTGCCTTATCACACCCAAACATCTTTCATACATAATTA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        37967 38 -   1987038 TTGCCTTATCACACCCAAACATCTTTCATATATAATTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21118507 38 -  24206276 TTGCCTTATCACACCCAAACATCTTTCATATATAATTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        33672 38 -   1397330 TTGCCTTATCACACCCAAACATCTTTCATATATAATTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        57014 38 -   1784207 TTGCCTTATCACACCCAAACATCTTTCATATATAATTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22259942 38 + 158406734 TTGCCTTATCACACCCAAACATCTTTCATACATAATTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50490506 35 +  54856640 ---CCTCATCACACCCAAACACCTTTCATATATAATTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       633791 38 -   2910086 TTGCCTTATCACACCCAAACATCTTTCATATATAATTA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40661895 38 +  42888418 TTGCCTTATCACACCCAAACATCTTTCATATATAATTA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113285197 38 + 116334831 TTCCCTTACCACACCTAGACATCTTTCATATGTAATTA
i micMur3.chr9              C 0 I 215
s otoGar3.GL873530             647419 24 -  36342412 --------------CTAGAAATTTGTTACTTCTAATCA
i otoGar3.GL873530          C 0 I 1
s mm10.chr7                  81367187 38 + 145441459 TACCCTTACTACACCCAAACATGCTTCATATGAAATTA
i mm10.chr7                 C 0 C 0
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e dasNov3.JH570731            1819223 240 +   3943991 I
e canFam3.chr3               54424273 45 +  91889043 I

a score=91033.000000
s hg38.chr15_KI270850v1_alt    351633 8 +    430880 TTTCCTCT
s panTro5.chr15              63505009 8 +  83230942 TTTCCTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80462145 8 +  99763055 TTTCCTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        62298 8 -   1709092 TTTCCTCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17221775 8 - 121039945 TTTCCTCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60902634 8 + 169600520 TTTCCTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108429371 8 - 171882078 TTTCCTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        40117 8 -   2311642 TTTCCTCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        38005 8 -   1987038 TTTCCTCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21118545 8 -  24206276 TTTCCTCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        33710 8 -   1397330 TTTCCTCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        57052 8 -   1784207 TTTCCTCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22259980 8 + 158406734 TTTCCTCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50490541 8 +  54856640 TTTCCTCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       633829 8 -   2910086 TTTCCTCT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40661933 8 +  42888418 TTTCCTCT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             647444 7 -  36342412 TTCCCTT-
i otoGar3.GL873530          I 1 I 42
s mm10.chr7                  81367225 8 + 145441459 TTTATGTT
i mm10.chr7                 C 0 C 0
e micMur3.chr9              113285235 215 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e dasNov3.JH570731            1819223 240 +   3943991 I
e canFam3.chr3               54424273 45 +  91889043 I

a score=246618.000000
s hg38.chr15_KI270850v1_alt    351641 21 +    430880 GACTTAAAGACTGGAGGTTAT
s panTro5.chr15              63505017 21 +  83230942 GACTTAAAGACTGGAGGTTAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80462153 21 +  99763055 GACTTAAAGACTGGAGGTTAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        62306 21 -   1709092 GACTTAAAGACTGGAGGTTAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17221783 21 - 121039945 GACTTAAAGACTGGAGGTTAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60902642 21 + 169600520 GACTTAAAGACTGGAGGTTAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108429379 21 - 171882078 GACTTAAAGACTGGAGGTTAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        40125 21 -   2311642 GACTTAAAGACTGGAGGTTAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        38013 21 -   1987038 GACTTAAAGACTGGAGGTTAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21118553 21 -  24206276 GACTTAAAGACTAGAGGTTAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        33718 21 -   1397330 GACTTAAAGACTGGAGGTTAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        57060 21 -   1784207 GACTTAAAGACTGGAGGTTAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22259988 21 + 158406734 GACTTAAAGACTAGAGGTTAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50490549 21 +  54856640 GACTTAAAGACTAGAGGTTAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       633837 21 -   2910086 GACTTAAAGACTAGAGGTTAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40661941 21 +  42888418 GACTTAAAGACTAGAGGTTAT
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81367233 21 + 145441459 AATTTAAAGGTTGGAGCGTAT
i mm10.chr7                 C 0 C 0
e micMur3.chr9              113285235 215 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e dasNov3.JH570731            1819223 240 +   3943991 I
e canFam3.chr3               54424273 45 +  91889043 I
e otoGar3.GL873530             647451 42 -  36342412 I

a score=1060666.000000
s hg38.chr15_KI270850v1_alt    351662 121 +    430880 ggccaagtgcagtggttcacgcctgtaataccag-taccttgggggactgaggcaggaggactgcttgagaccaggagttcaagaccaccctggacaacatagtaaggcctgtctcta------------aaaa
s panTro5.chr15              63505038 121 +  83230942 ggccaagtgcagtggttcacgcctgtaataccag-caccttgggggactgaggcaggaggactgcttgagaccaggagttcaagaccaccctggacaacatagcaaggcctgtctcta------------aaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80462174 121 +  99763055 ggccaagtgcagtggttcacgcctgtaataccag-caccttgggggactgaggcaggaggactgcttgagaccaggagttcaagaccaccctggacaacatagcaaggcctgtctcta------------aaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        62327 121 -   1709092 ggccaagtgcagtggttcacgcctgtaataccag-caccttgggggactgaggcaggaggactgcttgagaccaggagttgaagaccaccctggacaacatagcaagtcctgtctcta------------aaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17221804 121 - 121039945 ggccaagtgcagtggttcacgcctgtaataccag-caccttgggggactgaggcaggaggactgcttgaggccaggagttcaagaccaccctggacaacatagcaaggcctgtctcta------------aaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60902663 119 + 169600520 ggccgagtgctgtggttcatgcctataataccag-caccttgggggattgaggcaagaggactgcttgaggtcaggagttcaagaccaccctgggcaacacagcaaggcctgtctct--------------aaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108429400 120 - 171882078 ggccgagtgctgtggttcatgcctataataccag-caccttgggggattgaggcaggaggactgcttgaggtcaggagttcaagaccaccctgggcaacacagcaaggcctgtctct-------------aaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        40146 120 -   2311642 ggccgagtgctgtggtttatgcctataataccag-caccttgggggattgaggcaggaggactgcttgaggtcaggagttcaagaccaccctgggcaacacagcaaggcctgtctct-------------aaaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        38034 121 -   1987038 ggccgagtgctgtggttcatgcctataataccagccaccttgggggactgaggcaggaggactgcttgaggtcaggagttcaagaccaccctgggcaacacagcaaggcctgtctct-------------aaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21118574 120 -  24206276 ggccgagttctgtggttcatgcctataatactag-caccttgggggactgaggcaggaggacggcttgaggtcaggaattcaagaccaccctgggcaacacagcaaggcctgtctct-------------aaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        33739 120 -   1397330 ggccgagtgctgtggttcatgcctataataccag-caccttgggggactgaggcaggaggactgcttgaggtcaggagttcaagaccaccctgggcaacacagcaaggcctgtctct-------------aaaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        57081 120 -   1784207 ggccgagtgcagtgattcatgcctgtaataccag-caccttgggggactgaggcaggaggactgcttgaggtcaggagttcaagaccaccctgggcaacacagcaaggcctgtctct-------------aaaa
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22260009 120 + 158406734 ggcctagtgcagtggttcacacctgtaataccac-caactt-ggggactgaggcaggaggattgcttgaggccaagagttcaagaccagcctgggc---------aggcctatctctt---aaaaaaaaaaaaa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50490570 119 +  54856640 GGCCTACTgcagtggttcacacctgtaataccac-caacttgggggactgagacaggaggattgcttgaggccaggagttcaagaccagcctgggc---------aggcctagctctt-----aaaaaaaaaaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       633858 124 -   2910086 ggcctagtgcagaggttcacacctgtaataccac-caacttgggggactgaagcaggaggattgcttgaggccaggagttcaagaccagcctgggc---------agacctatctcttaaaaaaaaaaaaaaaa
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40661962 112 +  42888418 ggcctagtgcagtggttcacgcctgtaataccac-caacttgggagactgaggctggaggattgcttgaggccaggagttcaagaccagcctgggc---------aggcctatctctt------------aaaa
i aotNan1.NW_018505940v1    C 0 C 0
e micMur3.chr9              113285235 215 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e mm10.chr7                  81367254   0 + 145441459 C
e dasNov3.JH570731            1819223 240 +   3943991 I
e canFam3.chr3               54424273  45 +  91889043 I
e otoGar3.GL873530             647451  42 -  36342412 I

a score=359314.000000
s hg38.chr15_KI270850v1_alt    351783 38 +    430880 aaataaatcagccaggcattatggcatgcactgatagt
s panTro5.chr15              63505159 38 +  83230942 aaataaatcagccaggcattatggcatgcactgatagt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80462295 38 +  99763055 aaataaatcagccaggcattatggcatgcactgatagt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        62448 38 -   1709092 aaataaatcagccaggcattatggcatgcactgatagt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17221925 38 - 121039945 aaataaatcagccaggcattatggcatgcaccaatagt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60902782 38 + 169600520 aaataaatcagacaggcattatggcatgcactgacagt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108429520 38 - 171882078 aaataaatcagacaggcattatggcatgcactgacagt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        40266 38 -   2311642 aaataaatcagacaggcattatggcatgcactgacagt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        38155 38 -   1987038 ataaaaatcagacaggcattatggcatgcactgacagt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21118694 38 -  24206276 aaataaatcagacaggcattatggcatgcactgacagt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        33859 38 -   1397330 aaaaaaatcagacaggcattatggcatgcactgacagt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        57201 38 -   1784207 aaataaatcagacaggcattatggcacgcactgacagt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22260129 38 + 158406734 aaaaaaatcagccaggcattatggcatgtacctatagt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50490689 38 +  54856640 aaaaaattcagccaggcattatggcatgtacctatagt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       633982 38 -   2910086 aaaaaaatcagccaggcattatggcatgcacctatagt
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40662074 38 +  42888418 aaaaaaattagccacgcattgtggcatgtacctatagt
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81367254 18 + 145441459 AAATAAA--------------------GCTCTTACAGT
i mm10.chr7                 C 0 C 0
e micMur3.chr9              113285235 215 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e dasNov3.JH570731            1819223 240 +   3943991 I
e canFam3.chr3               54424273 45 +  91889043 I
e otoGar3.GL873530             647451 42 -  36342412 I

a score=1139367.000000
s hg38.chr15_KI270850v1_alt    351821 110 +    430880 cccagttactcaggaggctgaggcaggaggatcacttgagcctaagaggttgaggctgcagtgggccatgatcgtgccactgcactccagactgggcaacagggc-aaaat
s panTro5.chr15              63505197 110 +  83230942 cccagttactcaggaggctgaggcaggaggatcacttgagcctaagaggttgaggctgcagtgggccatgatcgtgccactgcactccagactgggcaacagggc-aaaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80462333 110 +  99763055 cccagttactcaggaggctgaggcaggaggatcacttgagcctaagaggttgaggctgcagtgggccatgatcgtgccactgcactccagactgggcaacagggc-aaaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        62486 110 -   1709092 cccagttactcaggaggctgaggcaggaggatcacttgagcctaggaggttgaggctgcagtgggccatgatcgtgccactgcactccagactgcgcaacagggc-aaaat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17221963 110 - 121039945 cccaattactcaggaggctgaggcaggaggatcacttgagcctaggaggttgaggctgcagtgagccatgatcgtgccactgcactccagactgggcaacagggc-aaaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60902820 110 + 169600520 cccagttactcaggaggctgagacaggaggatcacttgagcctaggaggttgaggctgcagtgagccatgatcgggccattgcactccaggctgggcaacagggc-aaaat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108429558 110 - 171882078 cccagttactcaggaggctgagacaggaggatcacttgagcctaggaggttgaggctgcagtgagccatgatcgggccattgcactccaggctgggcaacagggc-aaaat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        40304 110 -   2311642 cccagttactcaggaggctgagacaggaggatcacttgagcctaggaggttgaggctgcagtgagccatgatcgggccattgcactccaggctgggcaacagggc-aaaat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        38193 110 -   1987038 cccagttactcaggaggctgagacaggaggatcacttgagcctaggaggttgaggctgcagtgagccatgatcgggccattgcactccaggctgggcaacagggc-aaaat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21118732 110 -  24206276 cccagttactcaggaggctgagacaggaggatcacttgagcctaggaggttgaggctgcagtgagccatgatcgggccattgcactccaggctgggcaacaggac-aaaat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        33897 110 -   1397330 cccagttactcaggaggctgagacaggaggatcacttgagcctaggaggttgaggctgcagtgagccatgatcgggccattgcactccaggctgggcaacagggc-aaaat
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        57239 110 -   1784207 cccagttactcaggaggctgagacaggaggatcacttgagcctaggaggttgaggctgcagtgagccatgatcgggccattgcactccaggctgggcaacagggc-aaaat
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22260167 110 + 158406734 cccagttactcaaaaggcttaggcagaaggatcacttgaacccaggaggttgaggttgcagtgagccatgattgtgccactgcactccagcctgggcaacaggac-aaaat
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50490727 110 +  54856640 cccagttactcaagaggcttaggcaggaagatcacttgagcccagaaggttgaggctgcagtgagccatgattgtgccactgcactccagcctgggcaacaggac-aaaat
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       634020 111 -   2910086 cccagttactcaagaggcttaggcaggatcaccacttgagcccaggaggttgaggctgcactgagccatgattgtgccactgcactccagcctgggcaacaggacaaaaat
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40662112 110 +  42888418 cccagttactcaagaggcttaggcaggaggatcacttgagcccaggaggttgaggctgcagtgagccatgattgtgccactgcactccagcctgggtgacaggac-aaaat
i aotNan1.NW_018505940v1    C 0 C 0
e micMur3.chr9              113285235 215 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e mm10.chr7                  81367272   0 + 145441459 C
e dasNov3.JH570731            1819223 240 +   3943991 I
e canFam3.chr3               54424273  45 +  91889043 I
e otoGar3.GL873530             647451  42 -  36342412 I

a score=83509.000000
s hg38.chr15_KI270850v1_alt    351931 14 +    430880 cctgtctcaaaa------------aa
s panTro5.chr15              63505307 14 +  83230942 cctgtctcaaaa------------aa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80462443 14 +  99763055 cctgtctcaaaa------------aa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        62596 14 -   1709092 cctgtctcaaaa------------aa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17222073 14 - 121039945 cctgtctcaaaa------------aa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60902930 12 + 169600520 cctgtctc--aa------------aa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108429668 14 - 171882078 cctctctcaaaa------------aa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        40414 14 -   2311642 cctgtctcaaaa------------aa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        38303 14 -   1987038 cctgtctcaaaa------------aa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21118842 14 -  24206276 cctgtctcaaaa------------aa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        34007 14 -   1397330 cctgtctcaaaa------------aa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        57349 13 -   1784207 cctgtctc-aaa------------aa
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22260277 21 + 158406734 cctgtctcaaGG-----GGGGGGGGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50490837 24 +  54856640 cctgtttcGGGG--GGCGGGGAGGAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       634131 24 -   2910086 cctgtctcaagg--gaaaaaaaaaaa
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40662222 26 +  42888418 cctgtctcgagggggggaaaaaaaaa
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54424318 13 +  91889043 CTTGCCTTAGAA------------A-
i canFam3.chr3              I 45 C 0
s dasNov3.JH570731            1819463 14 +   3943991 CTTGACTTAGAA------------GA
i dasNov3.JH570731          I 240 C 0
e micMur3.chr9              113285235 215 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e mm10.chr7                  81367272  0 + 145441459 C
e otoGar3.GL873530             647451 42 -  36342412 I

a score=15587.000000
s hg38.chr15_KI270850v1_alt    351945 5 +    430880 aaaaa
s panTro5.chr15              63505321 5 +  83230942 aaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80462457 5 +  99763055 aaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        62610 5 -   1709092 aagaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17222087 5 - 121039945 aaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60902942 4 + 169600520 aaaa-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108429682 4 - 171882078 aaaa-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        40428 4 -   2311642 aaaa-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        38317 4 -   1987038 aaaa-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21118856 4 -  24206276 aaaa-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        34021 4 -   1397330 aaaa-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        57362 4 -   1784207 aaaa-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22260298 4 + 158406734 GAAA-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50490861 4 +  54856640 GAAA-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       634155 4 -   2910086 aaaa-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40662248 4 +  42888418 aaaa-
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81367272 4 + 145441459 ATAA-
i mm10.chr7                 C 0 I 1
e micMur3.chr9              113285235 215 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e dasNov3.JH570731            1819477 0 +   3943991 C
e canFam3.chr3               54424331 0 +  91889043 C
e otoGar3.GL873530             647451 42 -  36342412 I

a score=1905421.000000
s hg38.chr15_KI270850v1_alt    351950 205 +    430880 aaaGACTGGAGGTTATAATTTAAAT--ACAGTTCTCACACTAAAATGGTAA--ATAC-TTAAGA-GAAAAAAAA---GGCATCAGATAA----AGAAATCAACAAG----GCTATATAGGACATTTACTTAAGAGTTCCTTCTCTCTGAAAACACT-GG-----GTG-GGAGTGGAGGACAACACAGAGAGGCA--AGACAGACACAGTAACCATGAACAAATAAGAATAT
s panTro5.chr15              63505326 207 +  83230942 aa-GACTGGAGGTTATAATTTAAAT--ACAGTTCTCACACTAAAATGGTAA--ATAC-CTAAGA-GAAAAAAAAAAAGGCATCAGATAA----AGAAATCAACAAG----ACTATATAGGACATTTACTTAAGAGTTCCTTCTCTCTGAAAACACT-GG-----GTG-GGAGTGGAGGACAACACAGAGAGGCA--AGACAGACACAGTAACCATGAACAAATAAGAATAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80462462 188 +  99763055 a--GACTGGAGGTTATAATTTAAAT--ACAGTTCTCACACTAAAATGGTAA--ATAC-CTAAGA-GAAAAAAAA-AGGGCATCAGA-------------------------CTATATAGGACATTTACTTAAGAGTTCCTTCTCTCTGAAAACACT-GG-----GTG-GGAGTGGAGGACAACACAGAGAGGCA--AGACAGACACAGTAACCATGAACAAATAAGAATAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        62615 202 -   1709092 ---GACTGGAGGTTATAATTTAAAT--ACAGTTCTCACACTAAAATGGTAA--ATAC-TTAAGA-GAAAAAAAA---GGCATCAGATAA----AGAAATCAACATG----GCTATATAGGACATTTACTTAACAGTTCCTTCTCTCTGAAAACACT-GG-----GTG-GGAGTGGAGGACAACACAGAGAGGCA--AGACAGACACAGTAACCATGAACAAATAAGAATAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17222092 204 - 121039945 a--GACTGGAGGTTATAATTTAAAT--ACAGTTCTCACACTAAAATGGTAA--ATACTTTAAGA-GGAAAAAAA--AGGCATCAGATAA----AGAAATCAACATG----GCTATATAAGACATTTACTTAACAGTTCCTTCTCTCTG-AAACACT-TG-----GTG-GGAGTGGAGGACAACACAGAGAGGCA--AGACAGACACAGTAACCATGAACAAATAAGAATAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60902946 191 + 169600520 ---GACTAGAGGTTATAATTTAAAT--ACAGTTCTCACACTAAAATGGTAAATATAC-TTAAGA-GAAAAAAAA--AGGCATCAGATAA----AGAAATCAACATG----GCTACACAGGACATTCA--------------CTCTCTGAAAACACT-GA-----GTG-GGAGTGGAGGACAACACAGAGAGGCA--AGACAGACACAGTAACCATGAACAAGTAAGAGTAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108429686 191 - 171882078 ---GACTAGAGGTTATAATTTAAAC--ACAGTTCTCACACTAAAATGGTAAATATAC-TTAAGA-GAAAAAAAA--AGGCATCAGATAA----AGAAATCAACATG----GCTACACAGGACATTCA--------------CTCTCTGAAAACACT-GA-----GTG-GGAGTGGAGGACAACACAGAGAGGCA--AGACAGACACAGTAACCATGAACAAGTAAGAGTAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        40432 190 -   2311642 ---GACTAGAGGTTATAATTTAAAT--ACAGTTCTCACACTAAAATGGTAAATATAC-TTAAGA-G-AAAAAAA--AGGCATCAGATAA----AGAAATCAACATG----GCTACACAGGACATTCA--------------CTCTCTGAAAACACT-GA-----GTG-GGAGTGGAGGACAACACAGAGAGGCA--AGACAGACACAGTAACCATGAACAAGTAAGAGTAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        38321 191 -   1987038 ---GACTAGAGGTTATAATTTAAAT--ACAGTTCTCACATTAAAATGGTAAATATAC-TTAAGA-GAAAAAAAA--AGGCATCAGATAA----ATAAATCAACATG----GCTACACAGGACATTCA--------------CTCTCTGAAAACACT-GA-----GTG-GGAGTGGAGGACAACACAGAGAGGCA--AGACAGACACAGTAACCATGAACAAGTAAGAGTAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21118860 192 -  24206276 ---GACTAGAGGTTATAATTTAAAT--ACAGTTCTCACACTAAAATGGTAAATATAC-TTAAGAGGAAAAAAAA--AGGCATCAGATAA----AGAAATCAACATG----GCTACATAGGACATTCA--------------CTCTCTGAAAACACT-GA-----GTG-GGAGTGGAGGACAACACAGAGAGGCA--AGACAGACACAGTAACCATGAACAAGTAAGAGTAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        34025 191 -   1397330 ---GACTAGAGGTTATAATTTAAAT--ACAGTTCTCACATTAAAATGGTAAATATAC-TTAAGA-GAAAAAAAA--AGGCATCAGATAA----ATAAATCAACATG----GCTACACAGGACATTCA--------------CTCTCTGAAAACACT-GA-----GTG-GGAGTGGAGGACAACACAGAGAGGCA--AGACAGACACAGTAACCATGAACAAGTAAGAGTAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        57366 190 -   1784207 ---GACTAGACGTTATAATTTAAAT--ACAGTTCTCACACTAAAATGGTAAATATAC-TTAAGA-G-AAAAAAA--AGGCATCAGATAA----AGAAGTCAACATG----GCTACATAGGACATTTA--------------CTCTCTGAAAACACT-GG-----GTA-GGAGTGGAGGACAATACAGGGAGGCA--AGACAGACCGAGTAACCAAGCACGAGTAAGAGTAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22260302 201 + 158406734 ---GACCGGAGTTTATAATTTAAAT--ACAGTTCTCACACTAAAATGGTAA--ATAT-TTAAGA-G-AAAAAAA----GCATCAGATAA----AGAAATCAACATG----GCTATATAGGCCATTTACTTAACAGTTCCTTCTGTCTGAAAACACTGGG-----GTG-GGAGTGGAGGACAACACAGAGAGGCA--AGACAGGCACAGTAACCATGAACAAATAAGAATAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50490865 202 +  54856640 ---GACTGGAGTTTATAATTAAAAT--ACAGTTCTCTCACTAAGATGGTAA--ATAT-TTAAGA-G-AAAAAAA--AGGCATCAGATAA----AGAAATCAACATA----GCTATATAGGACATTTACTTAACAGTTCCTTCTCTCTAAAAACACT-GG-----GTG-GGAGTGGAGGACAACACAGAGAGGCA--AGACAGGCACAGTAACCATGACCAAATAAGAATAT
i saiBol1.JH378108          C 0 I 314
s cebCap1.NW_016107610v1       634159 201 -   2910086 ---GACTGGAGTTTATAATTAAAAT--ACAGTTCTCACACTAAAATGGTAA--ATAT-TTAAGA-G-AAAAAAA---GGTATCAGATAA----AGAAATCAACATG----GCTATATAGAACATTTACTTAACAGTTCCTTCTCTCTGAAAACACT-GG-----GTG-GGAGTGGAGGACCACACAGAGAGACA--AGACAGGCATAGTAACCATCAACAAATAAGAATAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40662252 197 +  42888418 ---GACAGGAGTTTATAATTTAAAT--ACAGTTCTCACACTAAAATGGTAA--ATAT-TTAAGA-G-AAAAAAA---GGCATCAGATAA----AGAAATCAACATG----GCTATATAGGACATTTACTTAACAGTTCCTTCTCTCTGAAAA-----CG-----GTG-GGAGTGGAGGACAACACAGAGAGGCA--AGACAGACACAGTAACCATGAAAAAATAAGAATAT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             647493 210 -  36342412 AAACACTAGATGTTATACTTTAAATAAACAGCGCTTACAGCACAATGACAA--ATAC-TCAATA-GAAAACAAA--AGGTATCAAAGAA----AGAAACCAATGTGGCATGCTATAGAGGGTATTTCCCAAACAGTGTG--ACCTCTGAGAACACT-GG-----GTACTGGGTGGAGAAAGCTGCAGCAAGGC---TGACAGACATAGTAACCAGGAACAAATAAGAATAC
i otoGar3.GL873530          I 42 C 0
s mm10.chr7                  81367277 141 + 145441459 -------------------------------------------GAAGACTA--ACAT-TCAAGG-ACATAGAAA-----------------------GCCAAAATG----ACTATACAGGGCATTTCACAAAGAGTCTG--ATTTCTAAAAACACT-GT-----GTG-GAAGTAGGGAAGAA-GCAGAGAGGC---AGAGAAACACAGC-ACCACGAACAATAAAGAAT--
i mm10.chr7                 I 1 C 0
s canFam3.chr3               54424331 173 +  91889043 ------------CTGTAGGTTAAAC--ACAGCTCTTACAGCATAATGGCAA-------CTAGTA-ACTAAAATA----ACAGCAG--------------TAAGGTG----GCTATACAGGACATTCC-CAAGGAGTGTG--ATCTCTGAAAACAAT-GG-----TGG-GGTGCATGGTAGGGAGTAGGGAGG----AGAGAGGGAGGGTGACAGCCAGGAACAAAGACTAT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1819477 178 +   3943991 ---------------------------------------CGGAGAT--TAA--ATAC-CCAAGA-GGAAAAAAA-GAGACACCAATTAAACCCAGGTAGCAAGGTGA---GCTATACAGAACATTTCCCAAAAAGTCTG--GACTCTGAAAACACT-GGATTTAGTG-TGTGCTGGGGCCAGGGTGGGGGAATACCAGAGAAGCAAAGTAACCAGGAACAAATAGGAATAT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113285235 215 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I

a score=3569.000000
s hg38.chr15_KI270850v1_alt    352155 1 +    430880 -A
s panTro5.chr15              63505533 1 +  83230942 -A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80462650 1 +  99763055 -A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        62817 1 -   1709092 -A
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17222296 1 - 121039945 -A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60903137 1 + 169600520 -A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108429877 1 - 171882078 -A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        40622 1 -   2311642 -A
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        38512 1 -   1987038 -A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21119052 1 -  24206276 -A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        34216 1 -   1397330 -A
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        57556 1 -   1784207 -A
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22260503 1 + 158406734 -A
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50491381 1 +  54856640 -a
i saiBol1.JH378108          I 314 C 0
s cebCap1.NW_016107610v1       634360 1 -   2910086 -A
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40662449 1 +  42888418 -A
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             647703 1 -  36342412 -A
i otoGar3.GL873530          C 0 I 6
s canFam3.chr3               54424504 1 +  91889043 -G
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1819655 1 +   3943991 T-
i dasNov3.JH570731          C 0 I 1
e micMur3.chr9              113285235 215 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e mm10.chr7                  81367418 0 + 145441459 C

a score=1862357.000000
s hg38.chr15_KI270850v1_alt    352156 129 +    430880 AAAAAAGAATGGTAAGGATT---ATCATAGTTTCAGGAAAAGTGATGGCTAGAACAAGCTGATCACTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCACACG---------GAGCAAAAC--------CAAAA-----GGAGC
s panTro5.chr15              63505534 129 +  83230942 AAAAAAGAATGGTAAGGATT---ATCATAGTTTCAGGAAAAGTGATGGCTAGAACAAGCTGATCACTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCACACG---------GAGCAAAAC--------CAAAA-----GGAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80462651 129 +  99763055 AAAAAAGAATGGTAAGGATT---ATCATAGTTTCAGGAAAAGTGATGGCTAGAACAAGCTGATCACTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCACACG---------GAGCAAAAC--------CAAAA-----GGAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        62818 129 -   1709092 AAAAAAGAATGGTAAGGATT---ATCATAGTTTCAGGAAAAGTGATGCCTAGAACAAGCTGATCACTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCATACT---------GAGCAAAAC--------CAAAA-----GGAGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17222297 129 - 121039945 AAAAAAGAGTGGTAAGGATT---ATCATAGTTTCAGGAAAAGTGATGGCTAGAACAAGCTGATCACTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCATACT---------GAGCAAAAC--------CAAAA-----GGAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60903138 129 + 169600520 AAAAAAGAGTGGTAAGGATT---ATCATAGTTTCAGGAAAAGTGATAGCCAAAACAAGCTGATCATTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCATACT---------GAGCAAAAC--------CAAAA-----GGAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108429878 129 - 171882078 AAAAAAGAGTGGTAAGGATT---ATCATAGTTTCAGGAAAAGTGATAGCCAAAACAAGCTGATCATTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCATACT---------GAGCAAAAC--------CAAAA-----GGAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        40623 129 -   2311642 AAAAAAGAGTGGTAAGGATT---ATCATAGTTTCAGGAAAAGTGATAGCCAAAACAAGCTGATCATTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCATACT---------GAGCAAAAC--------CAAAA-----GGAGC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        38513 129 -   1987038 AAAAAAGAGTGGTAAGGATT---ATCATAGTTTCAGGAAAAGTGATAGCCAAAACAAGCTGATCATTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCATACT---------GAGCAAAAC--------CAAAA-----GAAGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21119053 129 -  24206276 AAAAAAGAGTGGTAAGGATT---ATCATAGTTTCAGGAAAAGTGATAGCCAAAACAAGCTGATCATTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCATACT---------GAGCAAAAC--------CAAAA-----GGAGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        34217 129 -   1397330 AAAAAAGAGTGGTAAGGATT---ATCATAGTTTCAGGAAAAGTGATAGCCAAAACAAGCTGATCATTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCATACT---------GAGCAAAAC--------CAAAA-----GAAGC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        57557 129 -   1784207 AAAAAAGAGTGGTAAGGATT---ATCATAGTTTCAGGAAAAGTGATAGCCAAAACAAGCTGATCATTGTGAAAA----ACATTCAAGACAACCCAAGGGACT-----------TTGTAAGCTCATACT---------GAGCAAAAC--------CAAAA-----GGAGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22260504 129 + 158406734 AAAAAAGAGTGATAAGGATT---ATCATAGTTTCAGGAAAAGTGATGGTCACAACAAGCTGATCATTGTGAAAA----ACATTCAGAACAA-CCAAGGGACT-----------TTGTAAGCTCATACT---------GAGCAAAACA-------GAAAG-----GGAGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50491382 130 +  54856640 aaaaaaGAGTGGTAAGGGTT---ATCACAGTTTCAGGAAAAGTGATGGCCACAACAAGCTGATCACTGTGAAAA----ACATTCAAGACAA-CCAAGGGACT-----------TTGTAAGCTCATACT---------GAGCAAAACA------CCCAAA-----GGAGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       634361 130 -   2910086 AAAAAAGAGTGGTAAGGATT---ATCATAGTTTCAGGAAAAGTGATGGCCACAACAAGCTGATCATTGTGAAAA----ACATTCAATACAA-CCAAGGGACT-----------TTGTAAGCTCATACT---------GAGCAAAACA------CCCAAA-----GGGGC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40662450 130 +  42888418 AAAAAAGAGTGGTAAGGATT---ATCATAGTTTCAGGAAAAGTGATGGCCACAACAAGCTGATCATTGTGAAAA----ACATTCAAGACAA-CCAAGGGACT-----------TTGTAAGCTCATGCT---------GAGCAAAACA------CCAAAA-----GGAGC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113285450 128 + 116334831 AAAAAGGAGTGGCAAGGATT---CTAATAATTTCAAGAAAAGTGATGGCAAGAATAAGCCGAACACTGTGAAAA----ACATTCAAGACAA-CCAAGGGACT-----------TTGTAAGCTCACAGT---------GAGCAAAAA--------CAAAA-----GGAGC
i micMur3.chr9              I 215 I 380
s otoGar3.GL873530             647710 127 -  36342412 AAAAAAAAGTGGCAAGGATT---CTAATAATCTC-AGGAAAGTGATTGCCAGAACAAGCTGAACACTGTGAAAA----ACATTCAGGACAG-CCAAGGGACT-----------TTGCAATCTCATATT---------GAACAAAAA--------CAAAA-----GGAGC
i otoGar3.GL873530          I 6 C 0
s mm10.chr7                  81367418 164 + 145441459 -AAAAAGAATGACATGGAAT---ATAATACTTTC-GGGAAAGTGATGGCCGGAACTAGCTGCATCCTGTAAAAAGCTCACATTGAACAGAAGCAAAGGAGCTAAGGCCTATTGCTTCAAGCAGATACGTGTTTTAAAAAGCAAGACAATTGCTACAGAATTGATGGGGC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54424505 127 +  91889043 ---AAAGAGTGGTACAGACT-TGGTAACAGGTTCAGGAAAAATGTTGACTGAAGCAAGCCCGATGTTGTGAAAA----ATATTCAAGACAA-CCAAGAAACT-----------TTGTAAGCTCATACT---------GAGCCAAAG--------CAAAA-----GGAGC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1819657 131 +   3943991 aaaaaagagtggcatggattgtgataatagtttcagggaaactgacagccagaacagctaaaaccttttgaaaa----atactcaagaaaa-ccaagggact-----------ttgtaaactctttct---------aagcaaaaa--------taaag-----gcagc
i dasNov3.JH570731          I 1 C 0
e proCoq1.NW_012142813v1        28518 2873 +     80520 I

a score=1244295.000000
s hg38.chr15_KI270850v1_alt    352285 110 +    430880 AAGGGCCTA---C---TTAGAGCA--------------------GAAAG-----AGA---------AAAATGTTATTAAGGATTTaaggacattactg-------ggtcacttgacaaaactggaatat--gaatgacagtttaatcaaagtagtgtta
s panTro5.chr15              63505663 110 +  83230942 AAGGGCCTA---C---TTAGAGCA--------------------GAAAG-----AGA---------AAAACGTTATTAAGGATTTAAGGACATTACTG-------GGTCACTTGACAAAACTGGAATAT--GAATGACAGTTTAATCAAAGTAGTGTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80462780 110 +  99763055 AAGGGCCTA---C---TTAGAGCA--------------------GAAAG-----AGA---------AAAATGTTATTAAGGATTTaaggacattactg-------ggtcacttgacaaaactggaatat--gaatgacagtttaatcaaagtagtgtta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        62947 110 -   1709092 AAGGGCCTA---C---TTAGAGCA--------------------GAAAG-----AGA---------AAAATGTTATTAAGGATTTAAGGACATTACTG-------GGTCACTTGACAAAACTGGAATAT--GAATGACAGTTTAATCAAAGTAGTGTTA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17222426 110 - 121039945 AAGGGCCTA---C---TTAGAGCA--------------------GAAAG-----AGA---------AAAATGTTATTAAGGATTTaaggacattactg-------ggtcacttgacaaaactggaatat--gaatgacagtttaatcaaagtagtgtta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60903267 109 + 169600520 AAGGGCCTA---C---TTAGAGCA--------------------CAAAG-----AGA---------AAAATGTTATTAAGGATTTaaggacattactg-------ggtcacttgacaaaattggaatat--gaatgacagtttaatcaaagtagtg-ta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430007 109 - 171882078 AAGGGCCTA---C---TTAGAGCA--------------------CAAAG-----AGA---------AAAATGTTATTAAGGATTTAAGGACATTACTG-------GGTCACTTGACAAAATTGGAATAT--GAATGACAGTTTAATCAAAGTAGTG-TA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        40752 109 -   2311642 AAGGGCCTA---C---TTAGAGCA--------------------CAAAG-----AGA---------AAAATGTTATTAAGGATTTaaggacattactg-------ggtcacttgacaaaattggaatat--gaatgacagtttaatcaaagtagtg-ta
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        38642 109 -   1987038 AAGGGCCTA---C---TTAGAGCA--------------------CAAAG-----AGA---------AAAATGTTATTAAGGATTTaaggacattactg-------ggtcacttgacaaaattggaatat--gaatgacagtttaatcaaagtagtg-ta
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21119182 109 -  24206276 AAGGGCCTA---C---TTAGAGCA--------------------CAAAG-----AGA---------AAAATGTTATTAAGGATTTaaggacattactg-------ggtcacttgacaaaattggaatat--gaatgacagtttaatcaaagtagtg-ta
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        34346 109 -   1397330 AAGGGCCTA---C---TTAGAGCA--------------------CAAAG-----AGA---------AAAATGTTATTAAGGATTTaaggacattactg-------ggtcacttgacaaaattggaatat--gaatgacagtttaatcaaagtagtg-ta
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        57686 109 -   1784207 AAGGGCCTA---C---TTAGAGCA--------------------CAAAG-----AGA---------AAAATGTTATTAAGGATTTaaggacattactg-------ggtcacttgacaaaattggaatat--gaatgacagtttaatcaaagtagtg-ta
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22260633 109 + 158406734 TAGGGGTTA---C---TTAGGGCA--------------------GAAAG-----AGA---------AAAATGTTATTAAGGATTTAAGGACATTACTG-------GGTCACTTGACAAAACTGAAATAG--GAAGGACAGTTTAACCAAAGTAGTA-TA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50491512 109 +  54856640 TAGGGGTTC---C---TTAGAGCA--------------------GAAAG-----AGA---------AAAATGTTATTAAGGATTTAAGGACATTACTG-------GGTCACTTGACAAAACTGGAATAG--GAAGGACAGTTTAACCAAAGTAGTA-TA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       634491 109 -   2910086 TAGGGGTTA---C---TTAGAGCA--------------------GAAAG-----AGA---------AAAATGTTATTAAGGATTTAAGGACATAACTG-------GGTCACCTGACAAAACTGGAATAG--GAAGAACAGTTTAACCAAAGTAGTA-TA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40662580 109 +  42888418 TAGGGGTTA---C---TTAGAGCA--------------------GAAAG-----AGA---------AAAATGTTATTAAGGATTTAAGGACATTACTG-------GGTCACCTGACAAAACTGGAATAG--GAAGGACAGTTTAACCAAAGTAGTA-TA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             647837 124 -  36342412 -TGGGCCTATTGC---TTAGAGCAGACACAAGCTGAGAGAGAAGGAAAG-----AAA---------TATATAATACTA-----TGAAGGACATTACCA-------GGTCACTTAACAAAATTGTAATAG--GAACA--AGTTTAATAAGAATGTTC-TA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81367582 116 + 145441459 TAGAGATGG---C---TCAGTCAT--------------------TAAAGGCTAAGGT---------AAAACATTCATAA------AAAGACATTACTGTATTACTGGGCACAGGACAAATTTGGaatataaaaataatagtttaataaatg-aata-ta
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54424632 114 +  91889043 TGGGGCCTACTGC---TTTGAGAAGATACCTGCT----------GACAG-----AGA---------AAAGTACCA--------TGAAGGACATC-CTG-------GGTCATGTGATGAAATTGGAGCAT--GAACAGGACTTTAATTAAAGTACTGTTA
i canFam3.chr3              C 0 I 47
s dasNov3.JH570731            1819788 105 +   3943991 tagggcctg---ctgtttggggca--------------------gatAT-----AGAAGGGGAGACAGGAAGGTACTGGAGGATAAAGAACATTACTG-------GGTCACTT---AGAATTGGAATAT--GAACTGGAGTTTTA--------------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113285578 380 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I

a score=266885.000000
s hg38.chr15_KI270850v1_alt    352395 21 +    430880 tcaactttaaattgactaaag
s panTro5.chr15              63505773 21 +  83230942 TCAACTTTAAATTGACTAAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80462890 21 +  99763055 tcaactttaaattgactaaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        63057 21 -   1709092 TCAACTTTAAATTGACTAAAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17222536 21 - 121039945 tcaactttaaattgactaaag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60903376 21 + 169600520 tcaactttaaattgactaaag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430116 21 - 171882078 TCAACTTTAAATTGACTAAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        40861 21 -   2311642 tcaactttaaattgactaaag
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        38751 21 -   1987038 tcaactttaaattGACTAAAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21119291 21 -  24206276 tcaactttaaattGACTAAAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        34455 21 -   1397330 tcaactttaaattGACTAAAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        57795 21 -   1784207 tcaactttaaattGACTAAAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22260742 21 + 158406734 TCAACTTTAAATTGACTGAAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50491621 21 +  54856640 TCAACTTTAACTTGACTGAAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       634600 21 -   2910086 TCAACTTTAAATTGACTGAAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40662689 21 +  42888418 TCAACTTTAAATTGACTGAAG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             647961 20 -  36342412 TCAGTATTAA-TCAACCAATG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81367698 21 + 145441459 tctattttaaaCTGCCCAAAG
i mm10.chr7                 C 0 I 190
s dasNov3.JH570731            1819893 21 +   3943991 TAAATTTTAAATTTAGTGAAG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113285578 380 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e canFam3.chr3               54424746 47 +  91889043 I

a score=264478.000000
s hg38.chr15_KI270850v1_alt    352416 34 +    430880 ---tt---aactgttttgttacatatgaatgtatgtaaga
s panTro5.chr15              63505794 34 +  83230942 ---TT---AACTGTTTTGTTACATATGAATGTTTGTAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80462911 34 +  99763055 ---tt---aactgttttgttacatatgaatgtttgtaaga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        63078 34 -   1709092 ---TT---AACTGTTTTGTTACATATGAATGTATGTAAGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17222557 34 - 121039945 ---tt---aactgttttgttacatatgaatgtatgtaaga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60903397 34 + 169600520 ---tt---aactgttttgttacatatgaatatatgtaaga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430137 34 - 171882078 ---TT---AACTGTTTTGTTACATATGAATATATGTAAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        40882 34 -   2311642 ---tt---aactgttttgttacatatgaatatatgtaaga
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        38772 30 -   1987038 ---TT---AACTGTTCAGTTAC----GAATGTATGTAAGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21119312 34 -  24206276 ---TT---AACTGTTTTGTTACGTACGAATGTATGTGAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        34476 30 -   1397330 ---TT---AACTGTTTAGT----TACGAATGTATGTAAGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        57816 34 -   1784207 ---TT---AACTGTTTTGTTACGTACCAATGTATGTAAGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22260763 30 + 158406734 ---TT---AACTGTTTTGTTACCTATGAA----TGTAACA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50491642 30 +  54856640 ---TT---AACTGTTTCCTTATGTATGCA----TGTAAGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       634621 30 -   2910086 ---TT---AACTGTTTTCTTATGTATGAA----TGTAAGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40662710 30 +  42888418 ---TT---AACTGTTTTGTTACGTATGAA----TGTAAGA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             647981 25 -  36342412 ---TTGACAACAATTTTGTTATGTAGGA------------
i otoGar3.GL873530          C 0 I 8
s dasNov3.JH570731            1819914 27 +   3943991 TTAGT---AACTGCTTTGTTATATATGAAT----------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113285578 380 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e mm10.chr7                  81367719 190 + 145441459 I
e canFam3.chr3               54424746 47 +  91889043 I

a score=560585.000000
s hg38.chr15_KI270850v1_alt    352450  83 +    430880 tcatctctattc-tttttttttttttttttttttttt-----------------gagcaagggtctccctctgtaacccaggctagagcgcaggtgcacaa
s panTro5.chr15              63505828 100 +  83230942 TCATCTCTATTC-tttttttttttttttttttttttttttttttttttttttttGAGCAagggtctccctctgtaacccaggctagagcgcaggcgcacaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80462945  82 +  99763055 tcatctctattc-ttttttttttttttttttttttt------------------gagcaaggttctccctctgtaacccaggctagagcgcaggcgcacaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        63112  91 -   1709092 TCATCTCTATTC-tttttttttttttttttttttttttttttttt---------gagcaagggtctccctctgtaacccaggctagagcgcaggtgcacaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17222591  79 - 121039945 tcatctctattc-tttttttttttttttttttt---------------------gagcaagggtctgcctctgtaacccaggctagagcgcaggtgcacta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60903431  68 + 169600520 tcatcgctattc-ttttttttt--------------------------------gagcaagggtctccctctgtaacccaggctacagcgcaggtgcacaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430171  68 - 171882078 TCATCGCTAttc-ttttttttt--------------------------------gagcaagggtctccctctgtaacccaggctacagcgcagatgcacaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        40916  68 -   2311642 tcatcgctattc-ttttttttt--------------------------------gagcaagggtctccctctgtaacccaggctacagcgcaggtgcacaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        38802  68 -   1987038 TCATCGCTAttc-ttttttttt--------------------------------gagcaagggtctccctttgtaacccaggctacagcgcaggtgcacaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21119346  68 -  24206276 TCATTGCTAttc-ttttttttt--------------------------------gaacaagggtctccctctgtaacccaggctacagcgcaggtgcacaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        34506  68 -   1397330 TCATCGCTAttc-ttttttttt--------------------------------gagcaagggtctccctttgtaacccaggctacagcgcaggtgcacaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        57850  61 -   1784207 TCATTGCTAttc-ttttttttt--------------------------------gagcaag-------ctttgtaacccaagctactgcgcaggtgcacaa
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22260793  68 + 158406734 TCATCTCTAttc-ttttttctt--------------------------------gagcaagggtctccctctgtaacccaggctagagtgcaagcaaacaa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50491672  68 +  54856640 TCATCTCTAttc-ttttttctt--------------------------------gagcaagggtctgcctctgtaacccaggctctagtgcaggtaaacaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       634651  69 -   2910086 TCATTTCTATTCAttttttctt--------------------------------gagcaagggtctccctctgtaacacaggctctagtgcaggtaaacaa
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40662740  68 +  42888418 TCATCTCTATTC-Ctttttctt--------------------------------gagcaagggtctccctctgtaacccaggctagagtgcaggtaaacaa
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1819941   8 +   3943991 ---------------------------------------------------------------------------------------------GTACACGA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113285578 380 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e mm10.chr7                  81367719 190 + 145441459 I
e canFam3.chr3               54424746  47 +  91889043 I
e otoGar3.GL873530             648006   8 -  36342412 I

a score=819406.000000
s hg38.chr15_KI270850v1_alt    352533 85 +    430880 ttacagctcactgcagtctcaacctcccacttcagcctccaaagtagctagcggcatgccaccatgtctgactaa----tttttttttt
s panTro5.chr15              63505928 85 +  83230942 ttacagctcactgcagtctcaacctcccacctcagcctccaaagtagctagcggcatgccaccatgtctgactaa----tttttttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463027 85 +  99763055 ttacagctcactgcagtctcaacctcccacctcagcctccaaagtagctagcggcatgccaccatgtctgactaa----tttttttttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        63203 85 -   1709092 ttacagctcactgcagtctcaacctcccacctcagcctccaaagtagctagcggcatgccaccatgtctgactaa----tttttttttt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17222670 85 - 121039945 ttacagctcactgcagtctcaacctcccacctctggctccgaagtagctagcggcatgccaccatgcctggctaa----tttttttttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60903499 85 + 169600520 ttacagctcactgcagtctcaacctcccatctcagcctcccaagtagctagcagcatgccaccatgtctggctaa----tttttttttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430239 85 - 171882078 ttacagctcactgcagtctcaacctcccatctcagcctcccaagtagctagcagcatgccaccatgtctggctaa----tttttttttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        40984 89 -   2311642 ttacagctcactgcagtctcaacctcccatctcagcctcccaagtagctagcagcatgccaccatgtctggctaatttttttttttttt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        38870 83 -   1987038 ttacagctcactgcagtctcaacctcccatctcagcctcccaagtagctagcagcatgccaccatgtctggctaa------tttttttt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21119414 85 -  24206276 ttacagctcactgcagtctcaacctcccatctcagcctcccaagtagctagcagcatgccaccatgtctggctaa----tttttttttt
i chlSab2.chr29             C 0 I 5
s manLeu1.NW_012106908v1        34574 85 -   1397330 ttacagctcactgcagtctcaacctcccatctcagcctcccaagtagctagcagcatgccaccatgtctggctaa----tttttttttt
i manLeu1.NW_012106908v1    C 0 I 6939
s colAng1.NW_012117110v1        57911 85 -   1784207 ttacagctcactgcagtctcaacctgccatctcagcctcccaagtagctagcagcatgtcaccatgtctggctaa----tttttctttt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22260861 85 + 158406734 ttacagatcactgcagtctcagcctcctacctcagcctcccaagtagccagggacatgctgccatgtctggctaa----tttttttttc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50491740 85 +  54856640 ttacagctcactgcagtctcagcctcccacctcaggctcccaagtagccagggacatgccaccatgtctggctag----tttttttttc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       634720 71 -   2910086 ttacagctcactgcagtctcagc-------------ctcccaagtagccagggacatgccaccatgtctggctaa-----ttttttttc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40662808 85 +  42888418 ttacagctcactgcagtctcagcctcccacctcagcctcccaagtagccagggacatgccaccatgtctggctaa----tttttttttc
i aotNan1.NW_018505940v1    C 0 C 0
e micMur3.chr9              113285578 380 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e mm10.chr7                  81367719 190 + 145441459 I
e dasNov3.JH570731            1819949  0 +   3943991 C
e canFam3.chr3               54424746 47 +  91889043 I
e otoGar3.GL873530             648006  8 -  36342412 I

a score=25952.000000
s hg38.chr15_KI270850v1_alt    352618 4 +    430880 tttt
s panTro5.chr15              63506013 4 +  83230942 tttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463112 4 +  99763055 tttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        63288 4 -   1709092 tttt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17222755 1 - 121039945 t---
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60903584 4 + 169600520 tttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430324 4 - 171882078 tttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        41073 4 -   2311642 tttt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        38953 4 -   1987038 tttt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21119504 4 -  24206276 tttt
i chlSab2.chr29             I 5 C 0
s colAng1.NW_012117110v1        57996 4 -   1784207 tttt
i colAng1.NW_012117110v1    C 0 I 138
s calJac3.chr6               22260946 4 + 158406734 tttt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50491825 4 +  54856640 tctt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       634791 4 -   2910086 tttt
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40662893 4 +  42888418 tttt
i aotNan1.NW_018505940v1    C 0 C 0
e micMur3.chr9              113285578 380 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e mm10.chr7                  81367719 190 + 145441459 I
e dasNov3.JH570731            1819949 0 +   3943991 C
e canFam3.chr3               54424746 47 +  91889043 I
e otoGar3.GL873530             648006 8 -  36342412 I
e manLeu1.NW_012106908v1        34659 6939 -   1397330 I

a score=918178.000000
s hg38.chr15_KI270850v1_alt    352622 111 +    430880 tttt----ggtagaggcaggatctcactctgttgcccaggctggtcttgaactcctgggctcaagcaatcctcctgcctcagcctcccaaagtactcaggtcacaggtgtgagcc
s panTro5.chr15              63506017 113 +  83230942 tttt--ttggtagaggcaggatctcactctgttgcccaggctggtctcgaactcctgggctcaagcaatcctcctgcctcagcctcccaaagtactcagatcacaggtgtgagcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463116 109 +  99763055 tg------gttagaggcaggatctcactctgttgcccaggctggtctcgaactcctgggctcaagcaatcctcctgcctcagcctcccaaagtactcagatcacaggtgtgagcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        63292 115 -   1709092 tttttttttgtagaggcaggatctcactatgttgcccaggctggtctcgaactcctggagtcaagcaatcctcctgcctcagcctcccaaagtactcagatcacaggtgtgagcc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17222756 107 - 121039945 --------tgtagaggcaggatctcactatgttgcccaggctggtcttgaacttctgggctcaagcaatcctcctgcctcagcctcccaaagtgctcagatcacaggtgtgagcc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60903588 111 + 169600520 ----tttttgtagaggcaggatcccactgtgtttcctaggctggtcttgaactcctgggctcaaacaatcctcctgcctcagcctcccaaagtgctcagatcacaggtgtgagcc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430328 111 - 171882078 ----tttttgtagaggcaggatcccactgtgtttcctaggctggtcttgaactcctgggctcaaacaatcctcctgcctcagcctcccaaagtgctcagatcacaggtgtgagcc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        41077 111 -   2311642 ----tttttgtagaggcaggatcccactgtgtttcctaggctggtcttgaactcctgggctcaaacaatcctcctgcctcagcctcccaaagtgctcagatcacaggtgtgagcc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        38957 111 -   1987038 ----tttttgcagaggcaggatcccactgtgtttcctaggctggtcttgaactcctgggctcaaacaatcctcctgcctcagcctctcaaagtgttcagatcacaggtgtgagcc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21119508 111 -  24206276 ----tttttgtagaggcaggatcccactgtgtttcctaggctggtcttgaactcctgggctcaaacaatcctcctgcctcagcctcccaaagtgctcagatcacaggtgtgagcc
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        58138 111 -   1784207 ----tttttgtagaggcaggatctcactgtgtttcccaggctggtcttgaactcctgggctcaaataatcctcctgcctcagcctcccaaagtgctcagatcacaggtgtgagcc
i colAng1.NW_012117110v1    I 138 C 0
s calJac3.chr6               22260950 109 + 158406734 ------tttggagagataggatttcactatgttgcccaggctggtcttgaactcctgggctcaagcaatcctcccacctcagcctcccaaagtactcagatcacaggtgtgagcc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50491829  97 +  54856640 ------tttggagagacaggatttcactatgttgcccaggctggtcttgaactcctgggctcaagcaatcctcctgcctcagcctcccaaagtgcaca------------gagcc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       634795 109 -   2910086 ------tttggagagacgggatttcactatgttgcccaggctggtcttgaactcctgggctcatgcaatcctcctgcctcagcctcccaaagtgctcagatcacaggtgtgagcc
i cebCap1.NW_016107610v1    C 0 I 13
s aotNan1.NW_018505940v1     40662897 109 +  42888418 ------tttggagagacaggatttcactatgttgcccaggctggtcttgaactcctgggctcaagcaatcctcctgcctcagcctcccaaagtgctcagatcacaggtgtgagcc
i aotNan1.NW_018505940v1    C 0 I 13
e micMur3.chr9              113285578 380 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e mm10.chr7                  81367719 190 + 145441459 I
e dasNov3.JH570731            1819949   0 +   3943991 C
e canFam3.chr3               54424746  47 +  91889043 I
e otoGar3.GL873530             648006   8 -  36342412 I
e manLeu1.NW_012106908v1        34659 6939 -   1397330 I

a score=73370.000000
s hg38.chr15_KI270850v1_alt    352733 13 +    430880 tccgtgcctgggc
s panTro5.chr15              63506130 13 +  83230942 tccgtgcctggGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463225 13 +  99763055 tccgtgcctgggc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        63407 13 -   1709092 tccgtgcctggGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17222863 13 - 121039945 tctgtgcctgggc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60903699 13 + 169600520 accgtgcctgggc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430439 13 - 171882078 accgtgcctggGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        41188 13 -   2311642 accatgcctgggc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        39068 13 -   1987038 accgtgcctggGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21119619 13 -  24206276 accgtgcctggGC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        58249 13 -   1784207 accatgcctggGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22261059 13 + 158406734 actgtgcccagcc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50491926 13 +  54856640 actgtgcccagcc
i saiBol1.JH378108          C 0 C 0
e micMur3.chr9              113285578 380 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e aotNan1.NW_018505940v1     40663006 13 +  42888418 I
e mm10.chr7                  81367719 190 + 145441459 I
e dasNov3.JH570731            1819949  0 +   3943991 C
e canFam3.chr3               54424746 47 +  91889043 I
e cebCap1.NW_016107610v1       634904 13 -   2910086 I
e otoGar3.GL873530             648006  8 -  36342412 I
e manLeu1.NW_012106908v1        34659 6939 -   1397330 I

a score=5500.000000
s hg38.chr15_KI270850v1_alt    352746 1 +    430880 c
s panTro5.chr15              63506143 1 +  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463238 1 +  99763055 c
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        63420 1 -   1709092 C
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17222876 1 - 121039945 c
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60903712 1 + 169600520 c
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430452 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        41201 1 -   2311642 c
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        39081 1 -   1987038 C
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21119632 1 -  24206276 C
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        58262 1 -   1784207 C
i colAng1.NW_012117110v1    C 0 C 0
e micMur3.chr9              113285578 380 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e aotNan1.NW_018505940v1     40663006 13 +  42888418 I
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261072 0 + 158406734 C
e dasNov3.JH570731            1819949 0 +   3943991 C
e canFam3.chr3               54424746 47 +  91889043 I
e cebCap1.NW_016107610v1       634904 13 -   2910086 I
e otoGar3.GL873530             648006 8 -  36342412 I
e manLeu1.NW_012106908v1        34659 6939 -   1397330 I
e saiBol1.JH378108           50491939 0 +  54856640 C

a score=4664.000000
s hg38.chr15_KI270850v1_alt    352747 1 +    430880 a
s panTro5.chr15              63506144 1 +  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463239 1 +  99763055 a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        63421 1 -   1709092 A
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17222877 1 - 121039945 a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60903713 1 + 169600520 a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430453 1 - 171882078 A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        41202 1 -   2311642 a
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        39082 1 -   1987038 A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21119633 1 -  24206276 A
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        58263 1 -   1784207 A
i colAng1.NW_012117110v1    C 0 C 0
s dasNov3.JH570731            1819949 1 +   3943991 G
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113285578 380 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e aotNan1.NW_018505940v1     40663006 13 +  42888418 I
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261072 0 + 158406734 C
e canFam3.chr3               54424746 47 +  91889043 I
e cebCap1.NW_016107610v1       634904 13 -   2910086 I
e otoGar3.GL873530             648006 8 -  36342412 I
e manLeu1.NW_012106908v1        34659 6939 -   1397330 I
e saiBol1.JH378108           50491939 0 +  54856640 C

a score=37118.000000
s hg38.chr15_KI270850v1_alt    352748 6 +    430880 attatc
s panTro5.chr15              63506145 6 +  83230942 ATTATC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463240 6 +  99763055 attatc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        63422 6 -   1709092 ATTATC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17222878 6 - 121039945 attatc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60903714 6 + 169600520 attatc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430454 6 - 171882078 ATTATC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        41203 6 -   2311642 attatc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        39083 6 -   1987038 ATTATC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21119634 6 -  24206276 ATTATC
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        58264 6 -   1784207 ATTATC
i colAng1.NW_012117110v1    C 0 C 0
s canFam3.chr3               54424793 6 +  91889043 AACATC
i canFam3.chr3              I 47 C 0
s dasNov3.JH570731            1819950 6 +   3943991 AATATC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113285578 380 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e aotNan1.NW_018505940v1     40663006 13 +  42888418 I
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261072 0 + 158406734 C
e cebCap1.NW_016107610v1       634904 13 -   2910086 I
e otoGar3.GL873530             648006 8 -  36342412 I
e manLeu1.NW_012106908v1        34659 6939 -   1397330 I
e saiBol1.JH378108           50491939 0 +  54856640 C

a score=185871.000000
s hg38.chr15_KI270850v1_alt    352754 30 +    430880 tctcctcttaatgattcagaaaacaattat
s panTro5.chr15              63506151 30 +  83230942 TCTCctcttaatgattcagaaaacaattat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463246 30 +  99763055 tctcctcttaatgattcagaaaacaattac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        63428 30 -   1709092 TCTCctctcaatgattcagaaaacaattat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17222884 30 - 121039945 tctcctcttaatgattcagaaaacaattat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60903720 30 + 169600520 tctcctcttaatgattcagaaaacaattat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430460 30 - 171882078 TCTCctcttaatgattcagaaaacaattat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        41209 30 -   2311642 tctcctcttaatgattcagaaaacaattat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        39089 30 -   1987038 TCTCctcttaatgattcagaaaacaattat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21119640 30 -  24206276 TCTCctcttaatgattcagaaaacaattat
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        58270 30 -   1784207 TCTCctcttaatgattcagaaaaaaattat
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873530             648014 29 -  36342412 TCATCTTTTaatggtgtagaaaaatatag-
i otoGar3.GL873530          I 8 C 0
s canFam3.chr3               54424799 30 +  91889043 TCTGCTCTTAATGGTCCAGGACGAATTCAC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1819956 28 +   3943991 TCtattcttaacagttcagaaaa--attat
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113285578 380 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e aotNan1.NW_018505940v1     40663006 13 +  42888418 I
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261072  0 + 158406734 C
e cebCap1.NW_016107610v1       634904 13 -   2910086 I
e manLeu1.NW_012106908v1        34659 6939 -   1397330 I
e saiBol1.JH378108           50491939  0 +  54856640 C

a score=788819.000000
s hg38.chr15_KI270850v1_alt    352784 112 +    430880 gtattgatacat--------ggagagagaatgtgcaaatgataaagcaaatggggtaaaatgaacacgaacaataggaggttctggataaaaaggattacaaatattctttgtataattt
s panTro5.chr15              63506181 112 +  83230942 gtattgatacat--------ggagagagaatgtgcaaatgataaagcaaatggggtaaaatgaacatgaacaataggaggttctggataaaaaggattacaaatattctttgtataattt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463276 112 +  99763055 gtattgatacat--------ggagagagaatgtgcaaatgataaagcaaatggggtaaaatgaacacgaacaataggaggttctggataaaaaggattacaaatattctttgtataattt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        63458 112 -   1709092 gtattgatacat--------ggagagagaatgtgcaaatgataaagcaaatggggtaaaatgaacacgaacaataggaggttctggataaaaaggattacaaatattctttgtataattt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17222914 112 - 121039945 gtattgatatat--------ggagagagaatgtgcaaatgataaagcaaatggggtaaaatgaacaacaacaataggaggttctggataaaaaggattacaaatattctttgtataattt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60903750 112 + 169600520 gtattgctatat--------ggagagagaatgtgcaaatgataaagcaaatggggtaaaatgaacaccaacaataggaggttctggataaaaaggaatacaaatattctttgtataattt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430490 112 - 171882078 gtattgctatat--------ggaaagagaatgtgcaaatgataaagcaaatggggtaaaatgaacaccaacaataggaggttctggataaaaaggaatacaaatattctttgtataattt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        41239 112 -   2311642 gtattgctatat--------ggagagagaatgtgcaaatgataaagcaaatggggtaaaatgaacaccaacaataggaggttctggataaaaaggaatacaaatattctttgtataattt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        39119 112 -   1987038 gtattgctatat--------ggagagagaatgtgcaaatgataaagcaaatggggtaaaatgaacaccaacaataggaggttctggataaaaaggaatacaaatattctttgtataattt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21119670 112 -  24206276 gtattgctatat--------ggagagagaatgtgcaaatgataaagcaaatggggtaaaatgaacaccaacaataggaggttctggataaaaaggaatacaaatattctttgtatacttt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        41598 112 -   1397330 GTATTGCtatat--------ggagagagaatgtgcaaatgataaagcaaatggggtaaaatgaacaccaacaataggaggttctggataaaaaggaatacaaatattctttgtataattt
i manLeu1.NW_012106908v1    I 6939 C 0
s colAng1.NW_012117110v1        58300 112 -   1784207 gtattgctatat--------ggagagagaatgcgcaaatggtaaagcaaatggggtaaaatgaacaccaacaataggaagttctggataaaaaggaatacaaatattctttgtataattt
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873530             648043 105 -  36342412 atataagtatat--------agagaagg--tgtgcaaatgaaaaaacaaatgggataaaatcaatgccagcaataggaggatctggat-aaatggaatacaagtattctt----caattt
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54424829  95 +  91889043 GTAGAG----AC--------AGAAAAAGAACATGCAAGTGATGAA--------GGTGAGAATCACAAGAGGA----GAGAGTCCAGAT-AAAAGAAATAAAAGTATTCCTTGTATAACTT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1819984 110 +   3943991 aaataaatacatatacagtgagaaagagaccatacaaataataatgcaacaggggcaaagtg----ccaacaataggagaatgtggataaaggg------aagagttttctatataattt
i dasNov3.JH570731          C 0 I 6
e micMur3.chr9              113285578 380 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e aotNan1.NW_018505940v1     40663006  13 +  42888418 I
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261072   0 + 158406734 C
e cebCap1.NW_016107610v1       634904  13 -   2910086 I
e saiBol1.JH378108           50491939   0 +  54856640 C

a score=449780.000000
s hg38.chr15_KI270850v1_alt    352896 39 +    430880 tatttgtataacttctataaatttgaaattatttcCATT
s panTro5.chr15              63506293 39 +  83230942 tatttgtataacttctataaattttaaattatttcCATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463388 39 +  99763055 tatttgtataacttctataaatttgaaattatttcCATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        63570 39 -   1709092 tatttgtataacttctataaatttgaaattatttcCTTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223026 38 - 121039945 tatttgtataacttctataaatttgaaattatttcCA-T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60903862 39 + 169600520 tatttgtgtaacttctataaatttgaaattatttcCATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430602 39 - 171882078 tatttgtgtaacttctataaatttgaaattatttcCATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        41351 39 -   2311642 tacttgtgtaacttctgtaaatttgaaattatttcCATT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        39231 39 -   1987038 tatttgtgtaacttctataaatttgaaattatttcCATT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21119782 39 -  24206276 tatttgtgtaacttctataaatttgaaattatttcCATT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        41710 39 -   1397330 tatttgtgtaacttctataaatttgaaattatttcCATT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        58412 39 -   1784207 tatttgtgtaacttctataaatttgaaattatttcCATT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22261072 38 + 158406734 TATTTTTACAACTTCTATAAATTTAAAATTATTTCCA-T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50491939 38 +  54856640 TATTTTTACAACTTCTATAAATTTGAAATTATTTCCA-T
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       634917 38 -   2910086 TATTTTTACAACTTCTATAAATTTGAAATTATTTCCA-T
i cebCap1.NW_016107610v1    I 13 C 0
s aotNan1.NW_018505940v1     40663019 37 +  42888418 TATTTTTACAACTTCTATAAATTTGAAATT-TTTCCA-T
i aotNan1.NW_018505940v1    I 13 C 0
s otoGar3.GL873530             648148 39 -  36342412 tatttttgtaatttctataaacttaaacttacttcaatg
i otoGar3.GL873530          C 0 I 11
s canFam3.chr3               54424924 32 +  91889043 ------TATAACTTCAGT-AATCTGAAATTATTCCCAAA
i canFam3.chr3              C 0 I 4
s dasNov3.JH570731            1820100 39 +   3943991 catttttataaattctgtaaatttgaaattatttccaaa
i dasNov3.JH570731          I 6 C 0
e micMur3.chr9              113285578 380 + 116334831 I
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e mm10.chr7                  81367719 190 + 145441459 I

a score=294534.000000
s hg38.chr15_KI270850v1_alt    352935 26 +    430880 -------TTTTTT-------------TAatgacaggaagaaaaaca
s panTro5.chr15              63506332 26 +  83230942 -------TTTTTT-------------TAatgacaggaagaaaaaca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463427 26 +  99763055 -------TTTTTT-------------TAatgacaggaagaaaaaca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        63609 26 -   1709092 -------TTTTTT-------------TAatgacaggaaggcaaaca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223064 26 - 121039945 -------TTTTTT-------------TAatgacaggaaggaaaaca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60903901 26 + 169600520 -------TTTTTT-------------aaatgataggaaggaacaga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430641 26 - 171882078 -------TTTTTT-------------aaatgataggaaggaacaga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        41390 26 -   2311642 -------TTTTTT-------------aaatgataggaaggaacaga
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        39270 26 -   1987038 -------TTTTTT-------------aaatgataggaaggaacaga
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21119821 26 -  24206276 -------TTTTTT-------------aaatgataggaaggaacaga
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        41749 26 -   1397330 -------TTTTTT-------------aaatgataggaaggaacaga
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        58451 26 -   1784207 -------TTTTTT-------------aaatgataggaaagaacaga
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22261110 26 + 158406734 -------TTTTTT-------------AAATGACAGGAAAGTAAACA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50491977 26 +  54856640 -------TTTTTT-------------aaatgacaggaaagtaaaca
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       634955 26 -   2910086 -------TTTTTT-------------aaatgacaggaaagtaaaca
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40663056 26 +  42888418 -------TTTTTT-------------aaatgacagtaaagtaaaca
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113285958 26 + 116334831 -------tttttt-------------tAatgacaggaagaaaaact
i micMur3.chr9              I 380 C 0
s otoGar3.GL873530             648198 26 -  36342412 -------tttttt-------------taatgacaagaagaaaatct
i otoGar3.GL873530          I 11 C 0
s canFam3.chr3               54424960 26 +  91889043 -------CTTTTT-------------AAGTGACACGaaggaaaact
i canFam3.chr3              I 4 C 0
s dasNov3.JH570731            1820139 46 +   3943991 taaaaagttatttaaaaaAAAAAAAAAAAagacaggaaggaaaact
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        28518 2873 +     80520 I
e mm10.chr7                  81367719 190 + 145441459 I

a score=4259394.000000
s hg38.chr15_KI270850v1_alt    352961 289 +    430880 agtcaattcccatttggctttctttgcctctttcaaggtaact-tatctaatcagcagagggaaatcaagcacaagtaataggaactaggat-cccag----------------aggataagacagtaattgagtacttttggagtct----c-tattagaagaaataatctt---ttaaacatgctttttaaagtctcaaaaaaatctgcatagatatttgcaggcccacatgtgtaaAAAGTTGTGCCTTCTCAACCAAGCATACCAAGACCAATCTTTACCATCCTACTCCAATAGCAATTAGCTCAACATC
s panTro5.chr15              63506358 292 +  83230942 agtcaattcccatttggctttctttgcctctttcaaggtaact-tatctaatcagcagagggaaatcaagcacaagtaataggaactaggat-cccag----------------aggataagatagtaattgagtacttTTGGAGTCT----C-TATTAGAAGAAATAATCTTCTTTTAAACATGCTTTTTAAAGTCTCAAAAAAATCTGCATAGATATTTGCAGGCCCACATGTGTAAAAAGTTGTGCCTTCTCAACCAAGCATACCAAGACCAATCTTTACCACCCTACTCCAATAGCAACTAGCTCAACATC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463453 292 +  99763055 agtcaattcccatttggctttctttgcctctttcaaggtaact-tatctaatcagcagagggaaatcaagcacaagtaataggaactaggat-cccag----------------aggataagatagtaattgagtacttTTGGAGTCT----C-TATTAGAAGAAATAATCTTCTTTTAAACATGCTTTTTAAAGTCTCAAAAAAATCTGCATAGATATTTGCAGGCCCACATGTGTAAAAAGTTGTGCCTTCTCAACCAAGCATACCAAGACCAATCTTTACCACCCTACTCCAATAGCAACTAGCTCAACATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        63635 292 -   1709092 agtcaattcccatttggctttctttgcctctttcaaggtaact-tatctaatcagcagagggaaatcaagcacaagtaataggaactaggat-cccag----------------aggataagatagtaattgagtgcttTTGGAGTCT----C-TATTAGAAGAAATAATCTTCTTTTAAACATGCTTTTTAAAGTCTCAAAAAAATCTGCATAGGTATTTGCAGGCCCACATGTGTAAAAAGTTGCGCCTTCTCAACTAAGCATACCAAGACCCATCTTTACCACCCTACTCCAATAGCAATTAGCTCAACATC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223090 292 - 121039945 agtcaattcccatttggctttctttgcctctttcaaggtaact-tatctaatcagcaaagggaaatcaagcacaagtaataggaactaggat-cccag----------------aggataagatagtaattgagtacttTTGGAGTCT----C-TATTAGAAGAAATAATCTTCTTTTAAACATGCTTTTTAAAGTCTCAAAAAAATCTGCATAGATATTTGCAGGCCCACATGTGTAAAAAGTTGTGCCTTCTCAATCAAGCATACCAAGACCCATCTTTACCACCCTACTCCAATAGCAATTAGCTCAACATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60903927 291 + 169600520 agtcaattcccatttggctttctttgcctctttcaaggtaact-tatctaatcagcaaagggaaatcaagcacaagtaataggaacgaggat-cccag----------------aggataagatagtaattgaatacttTTGGAGTCT----C-TATTAGAAGAAATAATCTTCTTTTAAACATACTTTTTAAAGTCTC-AAAAAATCTGCACAGATATTTGCAGGCCCACATGTGTAAAAAGTTGTGCCTTCTCAACCAAGCATACCAAGACCCATCTTTACCACCCTACTCCAATAGCAATTAGCTCAACATC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430667 291 - 171882078 agtcaattcccatttggctttctttgcctctttcaaggtaact-tatctaatcagcaaagggaaatcaagcacaagtaataggaacgaggat-cccag----------------aggataagatagtaattgaatacttttggagtct----c-tattagaagaaataatcttcttttaaacatactttttaaagtctc-aaaaaatctgcacagatatttgcaggcccacatgtgtaaAAAGTTGTGCCTTCTCAACCAAGCATACCAAGACCCATCTTTACCACCCTACTCCAATAGCAATTAGCTCAACATC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        41416 291 -   2311642 agtcaattcccatttggctttctttgcctctttcaaggtaact-tatctaatcagcaaagggaaatcaagcacaagtaataggaacgaggat-cccag----------------aggataagatagtaattgaatacttttggagtct----c-tattagaagaaataatcttcttttaaacatactttttaaagtctc-aaaaaatctgcacagatatttgcaggcccacatgtgtaaAAAGTTGTGCCTTCTCAACCAAGCATACCAAGACCCATCTTTACCACCCTACTCCAATAGCAATTAGCTCAACATC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        39296 291 -   1987038 agtcaattcccatttggctttctttgcctctttcaaggtaact-tatctaatcagcaaagggaaatcaagcacaagtaataggaacgaggat-cccag----------------aggataagatagtaattgaatacttttggagtct----c-tattagaagaaataatcttcttttaaacatactttttaaagtctc-aaaaaatctgcacagatatttgcaggcccacatgtgtaaAAAGTTGTGCCTTCTCAACCAAGCATACCAAGACCCATCTTTACCACCCTACTCCAATAGCAATTAGCTCAACATC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21119847 291 -  24206276 agtcaattcccatttggctttctttgcctctttcaaggtaact-tatctaatcagcaaagggaaatcaagcacaagtaataggaacgaggat-cccag----------------aggataagatagtaattgaatacttTTGGAGTCT----C-TATTAGAAGAAATAATCTTCTTTTAAACATAGTTTTTAAAGTCTC-AAAAAATGTGCACAGATATTTGCAGGCCCACATGTGTAAAAAGTTGTGCCTTCTCAACCAAGCATACCAAGACCCATCTTTACCACCCTACTCCAATAGCAATTAGCTCAACATC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        41775 291 -   1397330 agtcaattcccatttggctttctttgcctctttcaaggtaact-tatctaatcagcaaagggaaatcaagcacaagtaataggaacgaggat-cccag----------------aggataagatagtaattgaatacttttggagtct----c-tattagaagaaataatcttcttttaaacatactttttaaagtctc-aaaaaatctgcacagatatttgcaggcccacatgtgtaaAAACTTGTGCCTTCTCAACCAAGCATACCAAGACCCATCTTTACCACCCTACTCCAATAGCAATTAGCTCAACATC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        58477 291 -   1784207 agtcaattcccatttgactttctttgcctctttcaaggtaact-tatctaatcagcaaagggaaatcaagcacaagtaataggaacaaggat-cccag----------------aggataagatagtaattgaatacttTTGGAGTCT----C-TATTAGAAGAAATAATCTTCCTTTAAACATACTTTTTAAAGTCTC-AAAAAATCTGCACAGATATTTGCAGGCCCACATGTGTAAAAAGTTGTGCCTTCTCAACCAAGCATACCAAGATCCATCTTTACCACCCTACTCCAATAGCAATTAGCTCAACATC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22261136 278 + 158406734 AGTCAATTCCCATTTGG------------CTTTCAAGGTAACT-TATCTAATCCACAAAGGGAAATCAAGCACAA----TAGGAATTAGGAT-CCCAG----------------A-GGTAAGACAGTAATTAAGTACTTTTGGAGTCTCTGCC-TATTAGAAGAAATAATCTGCTTTTAAGCATGCTTTTTAAAGTCTC-AAAAAATTTGCATAGATATTTGCAGGCCCACATGTATAAGAAGTTGTGCCTTTTCAACCAAGAATATCAACAATCAGCTTTACCACCCTATTCTAATAGCAATTAGCTCAACACT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50492003 295 +  54856640 agtcaattcccatttggctttctttgcccctttcaaggtaact-tatctaatcagcaaagggaaatcaagaacaagcactaggaactaggat-cccag----------------agggtaagacagtaattgagtacttTTGGAGTCTCTGCC-TATTAGAAGAAATAATCTGCTTTTAAATATGCTTTTTAAAGTCTC-AAAAAATTTGCAAAGATATTTGCAGGCCCACATGTATAAGAATTTGTGCCTTTTCAACCAAGCATATCAAGAACCAGCTTTACCACCCTACTCGAATAGCAATTAGCTCAATACC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       634981 295 -   2910086 tgtcaattcccatttggctttctttgcccctttcaaggtaact-tatctaatcagcaaagggaaatcaagcacaagtaataggaactaggat-accag----------------aaggtaaggcagtaattgagtacttTTGGAGTCTCTGCC-TATTAGAAGAAATAATCTGCTTTTGAATATGCTTTTTAAAGTCTC-AAAAAATTTACATAGATATTTGTAGGCCCACATGTATAAGAAGTTATGCCTTTTCAACCAAGCATATCAAGAACCAGCTTTACCACCCTACTCTAACAGCAATTAGCTCAACACC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40663082 295 +  42888418 agtcaattcccatttggctttctttgcccctttcaaggtaact-tatctaatcagcaaagggaaatcaagcacaagtaataggaactaggat-cccag----------------agggtaagacagtaattgagtacttTTGGAGTCTCTGCC-TATTAGAAGAAATAATCTGCTTTTAAATGTGCTTTTTGAAGTCTC-AAAAAATGTGCATAGATATTTGCAGGCCCACATGTATAAGAAATTGTGCCTTTTCAACCAAGCATATCAAGAAGCAGCTTTACCACCCTACTCTAATAGCAATTAGCTCAACACC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113285984 291 + 116334831 agtcaattctcattcggctttctttgcctctttcaaggcaacc-gatctagccataacagggaaatcaagcacaagcaagaggaaccaggat-tccag----------------gggagaagacagtaattaattacctTTGCAGTCTCTCCC-TATTATAAGAAAGAATCTT--TTCAAACAAGCTTTTTAAAGCCTCAAAAACATTTATATAG--ATTTGAAGGCACACATGTGTACAAAGTTTTG-CTTCTCAACCAAACATACCAAGGGCCATCCTTACCACCTTACTTCAGTGGCAATTACCTCCACACC
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        31391 293 +     80520 agtcacttctcattcagctttctttgcctttttcaaggtaact-gatctagccctaacagggaaatcaagcaaaagtaacaggaactaggat-tccag----------------gggaaaagataataattgagtccctTTGCAGTCTCTGAC-TATTATAAGCAAGAATCTT--TTTAAACGAGCTTTTTAAAGCCTCAAAAACATTTGTATAGACATTTTCAGGCACACATGCGTACAAAGTTTTG-CTTCTCAACCAAACATACCAAGGGCCACCCTTACCACCTTACTTCAGTGGCAATtagctccacact
i proCoq1.NW_012142813v1    I 2873 C 0
s otoGar3.GL873530             648224 285 -  36342412 agtcaattctcatttgactttctttgcctctttcaaggcaact-gatctaaccagaa----aaaaaaaagcacaagtaacaggaactcggat-tccag----------------gagagaagacagtaactgagtacctTTGCAGTCTATGGCGCATTCTAAGAAATAATCTT-----AAACAAGCTCTTTAAACCCTCAAAAACATTCACAGAGATATGTGCAGG--CACATGTGTACAAAGTTTTA-TTTCTCAATCAACCACACCAAAGGTCATCCTTACCTCTCTCCTCCAACATCAATGAGCTCAACACC
i otoGar3.GL873530          C 0 I 6
s canFam3.chr3               54424986 290 +  91889043 agtcaattcccattgga--atctctgtctctttcaaggtaactggatctagcctgaaaag---aatcaagcacaagtaatagggcctagaat-cccaGTGGGAGCAGAGGGGGAGGGGCAGGGCATGA--TAAGTACCTTTGGAGCCTCTTCT-TATAAGAAGAAATAATCTTCTTTTAAACAAGCTTTTTAAAGCCTCAAAAACATCTGTATGGATATTTGCAGGCACACATGTATACAAAGTTCTGTCTTCTGTACCAAGC----------------TGGCCAACCCACTCCAACAGTAATTAGCTCAACATC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1820185 284 +   3943991 agttaattccc-tttggctttccatgcctctttcaaggcaagt-gatctcaccagaaaagaaaaatcaagcccaagtaatagggacttgaatccccag----------------gggagatgatagtaattgagtaccGTTAGAGTCTCTGCC-CGTGAGAGGAAATAGTCTT-TTTTAAACAAGTTTCCAAAAGCCTCGAAAACATCTGTACAGATATTTGTAGAC-----------AAAAGTTCTGCCTTCCTAACCAAGCATACCAAGGGCCATCCTTACCACCCCACACCAGAGATAATGAGTGCAACAGG
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81367719 190 + 145441459 I

a score=74290.000000
s hg38.chr15_KI270850v1_alt    353250 4 +    430880 TGGC
s panTro5.chr15              63506650 4 +  83230942 TGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463745 4 +  99763055 TGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        63927 4 -   1709092 TGGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223382 4 - 121039945 TGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904218 4 + 169600520 TGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430958 4 - 171882078 TGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        41707 4 -   2311642 TGGC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        39587 4 -   1987038 TGGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21120138 4 -  24206276 TGGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        42066 4 -   1397330 TGGC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        58768 4 -   1784207 TGGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22261414 4 + 158406734 TGGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50492298 4 +  54856640 TGGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       635276 4 -   2910086 TGGC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40663377 4 +  42888418 TGGC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113286275 4 + 116334831 TGGC
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        31684 4 +     80520 tggc
i proCoq1.NW_012142813v1    C 0 C 0
s canFam3.chr3               54425276 4 +  91889043 TGGC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1820469 4 +   3943991 TGGC
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81367719 190 + 145441459 I
e otoGar3.GL873530             648509 6 -  36342412 I

a score=204017.000000
s hg38.chr15_KI270850v1_alt    353254 14 +    430880 AAAAAGCAGGTGAA
s panTro5.chr15              63506654 14 +  83230942 AAAAAGCAGGTGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463749 14 +  99763055 AAAAAGCAGGTGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        63931 14 -   1709092 AAAAAGCAGGTGAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223386 14 - 121039945 AAAAAGCAGGTGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904222 14 + 169600520 AAAAAGCAGGTGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430962 14 - 171882078 AAAAAGCAGGTGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        41711 14 -   2311642 AAAAAGCAGGTGAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        39591 14 -   1987038 AAAAAGCAGGTGAA
i cerAty1.NW_012002657v1    C 0 I 305
s chlSab2.chr29              21120142 14 -  24206276 AAAAAGCAGGTGAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        42070 14 -   1397330 AAAAAGCAGGTGAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        58772 14 -   1784207 AAAAAGCAGGTGAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22261418 11 + 158406734 AAAAAGCAGGT---
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50492302 14 +  54856640 AAAAAGCAGGTAAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       635280 14 -   2910086 AAAAAGCAGGTGAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40663381 14 +  42888418 AAAAAGCAGGTGAA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113286279 14 + 116334831 AAAAAGCAGGCAAT
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        31688 14 +     80520 aaaaagcaggcaat
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             648515 14 -  36342412 AAAAGACAGGCTAT
i otoGar3.GL873530          I 6 C 0
s canFam3.chr3               54425280 14 +  91889043 AGAGAGCAGGGGTT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1820473 14 +   3943991 AGAGAACAGGTGAT
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81367719 190 + 145441459 I

a score=-6266.000000
s hg38.chr15_KI270850v1_alt    353268 4 +    430880 CAAT
s panTro5.chr15              63506668 4 +  83230942 CAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463763 4 +  99763055 CAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        63945 4 -   1709092 CAAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223400 4 - 121039945 CAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904236 1 + 169600520 --A-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430976 1 - 171882078 --A-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        41725 1 -   2311642 --A-
i macNem1.NW_012011945v1    C 0 C 0
s chlSab2.chr29              21120156 1 -  24206276 --A-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        42084 1 -   1397330 --A-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        58786 1 -   1784207 --A-
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50492316 4 +  54856640 CAAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       635294 4 -   2910086 CAAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40663395 4 +  42888418 CAAT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113286293 4 + 116334831 CAAC
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        31702 4 +     80520 caat
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             648529 4 -  36342412 CAAT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54425294 4 +  91889043 CAGT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1820487 4 +   3943991 CAGT
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261429 0 + 158406734 C
e cerAty1.NW_012002657v1        39605 305 -   1987038 I

a score=967614.000000
s hg38.chr15_KI270850v1_alt    353272 84 +    430880 GACTGCTGAATTCTACTGAAAGACAGAGAGTAC-GTATTCCATAGA---GCCAGTACG----CTAAGGCCCTACCCTTTTCTATCAAGGATA
s panTro5.chr15              63506672 84 +  83230942 GACTGCTGAATTCTACTGAAAGACAGAGAGTAC-GTATTCCATAGA---GCCAGTACG----CTAAGGCCCTACCCTTTTCTATCAAGGATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463767 84 +  99763055 GACTGCTGAATTCTACTGAAAGACAGAGAGTAC-GTATTCCATAGA---GCCAGTACG----CTAAGGCCCTACCCTTTTCTATCAAGGATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        63949 84 -   1709092 GACTGCTGAATTCTACTGAAAGACAGAGAGTAC-GTATTCCATAGA---GCCAGTACG----CTGAGGCCCTACCCTTTTCTATCAAGGATA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223404 82 - 121039945 GACTGCTGAATTCTACTGAAAGAC--AGAGTAC-ATATTCCACAGA---GCCAGTATG----CTGAGGCTCTACCCTTTTCTATCAAGGATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904237 84 + 169600520 GACTGCTGAATTCTACTGAA----AGAGAGTAC-ATATTCCATAGA---GCCAGTATGCTCCCTGAGGCTCTACCCTTTTCTATCAAGGATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108430977 84 - 171882078 GACTGCTGAATTCTACTGAA----AGAGAGTAC-ATATTCCATAGA---GCCAGTATGCTCCCTGAGGCTCTACCCTTTTCTATCAAGGATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        41726 84 -   2311642 GACTGCTGAATTCTACTGAA----AGAGAGTAC-ATATTCCATAGA---GCCAGTATGCTCCCTGAGGCTCTACCCTTTTCTATCAAGGATA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        39910 82 -   1987038 GACTGCTGAATTCTACTGAA----AGAGAGTAC-ATATTCCATAGA---GCCAGTATGCTCCCTGAGGCTC--CCCTTTTCTATCAAGGATA
i cerAty1.NW_012002657v1    I 305 C 0
s chlSab2.chr29              21120157 84 -  24206276 GACTGCTGAATTCTACTGAA----AGAGAGTAC-GTATTCCATACA---GCCAGTATGCTCCCTGACGCTCTACCCTTTTCTATCAAGGATA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        42085 82 -   1397330 GACTGCTGAATTCTACTGAA----AGAGAGTAC-ATATTCCATAGA---GCCAGTATGCTCCCTGAGGCTC--CCCTTTTCTATCAAGGATA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        58787 88 -   1784207 GACTGCTGAATTCTACTGAATGATAGAGAGTAC-GTATTCCATAGA---GCCAGTATGCTCCCTGAGGCTCTACCCTTTTCTATCAAGGATA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22261429 82 + 158406734 -------GAATTCTACCGTAAGACAGAGGGTACTATATTCCATAGA---GCCAGTATGCTCCCTGAGGCTCTACCCTTTTCTATCAAGAATA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50492320 89 +  54856640 GATAGCAGAATTCTACAGAAAGATAGAGGGTACTGTATTCCACAGA---GCCAGTATGCTCCCTGAGGCTCTACCCTTTTCCAATAAGAATA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       635298 89 -   2910086 GATTGCAGAATTCTACTGAAAGATAGAGGGTACTATATTCCATAGA---GCCAGTATGCTCACTGAGGCTCTACCCTTTTCTATCAAGAATA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40663399 89 +  42888418 GATTGCTGAATTCTACTGAAAGATAGAGGGTACTGTATTCCATAGA---ACCAGTATGCTCCCTGAGGCTCTACCCTTTTCTATCAAGAATA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113286297 89 + 116334831 ATTTGCTGAATTCTACTGAAAGAAAGAGAATACTGTATTCCTTAGA---GCCAGTAGGTTCACTGAGACCATCCCCTTTTCTATCAAGGATA
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        31706 88 +     80520 gtttgctgaatTCTACTGAAAGAAAGAGAATACTATGTGCCTTAGA---GCCAGTATGCTCACTGAGGCCAT-CCCTTTTCTACCAAGGATA
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             648533 87 -  36342412 GTTTGCTGAACCCTGCTGAAAGAGAGAGAAGGCTGTATTCCTGAAA---GCCTGT--GCTCACCGAGGCCATACTCTCTTCTATCAATGGTA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54425298 23 +  91889043 ATCTGCTGAATAGTACTGGAAGG---------------------------------------------------------------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1820491 92 +   3943991 GCTTGTTAACTACTACTGAAAGAAAGGAACGATTATAGCACTTAGAGCTGCCAGTATGCTTACTAAGGCTATATCCTTTCTTTTCAAGGTTA
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81367719 190 + 145441459 I

a score=70254.000000
s hg38.chr15_KI270850v1_alt    353356 7 +    430880 TTCAATT
s panTro5.chr15              63506756 7 +  83230942 TTCAATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463851 7 +  99763055 TTCAATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64033 7 -   1709092 TTCAATT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223486 7 - 121039945 TTCAATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904321 7 + 169600520 TTCAATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431061 7 - 171882078 TTCAATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        41810 7 -   2311642 TTCAATT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        39992 7 -   1987038 TTCAATT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21120241 7 -  24206276 TTCAATT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        42167 7 -   1397330 TTCAATT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        58875 7 -   1784207 TTCAATT
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107610v1       635387 5 -   2910086 --CAATT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40663488 5 +  42888418 --CAATT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113286386 7 + 116334831 CTCCTTT
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        31794 7 +     80520 TTCCTTT
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             648620 7 -  36342412 TTCCTTT
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH570731            1820583 7 +   3943991 TTCAATT
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261511 0 + 158406734 C
e canFam3.chr3               54425321 0 +  91889043 C
e saiBol1.JH378108           50492409 0 +  54856640 C

a score=86388.000000
s hg38.chr15_KI270850v1_alt    353363 13 +    430880 TAAGGACACAATG
s panTro5.chr15              63506763 13 +  83230942 TAAGGACACAATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463858 13 +  99763055 TAAGGACACAATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64040 13 -   1709092 TAAGGACACAATG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223493 12 - 121039945 TAAGGACACAAt-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904328 13 + 169600520 TAAGGACACAATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431068 13 - 171882078 TAAGGACACAATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        41817 13 -   2311642 TAAGGACACAATG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        39999 13 -   1987038 TAAGGACACAACG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21120248 13 -  24206276 TAAGGACACAATG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        42174 13 -   1397330 TAAGGACACAATG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        58882 13 -   1784207 TAAGGACACAAtg
i colAng1.NW_012117110v1    C 0 C 0
s dasNov3.JH570731            1820590 13 +   3943991 TAAGGACATAATG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113286393  0 + 116334831 C
e proCoq1.NW_012142813v1        31801  0 +     80520 C
e aotNan1.NW_018505940v1     40663493  0 +  42888418 C
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261511  0 + 158406734 C
e canFam3.chr3               54425321  0 +  91889043 C
e cebCap1.NW_016107610v1       635392  0 -   2910086 C
e otoGar3.GL873530             648627  0 -  36342412 C
e saiBol1.JH378108           50492409  0 +  54856640 C

a score=358175.000000
s hg38.chr15_KI270850v1_alt    353376 92 +    430880 G--Tttt--ttttgtttttttgttttgttttttttt---gagacggagtctcgctctgttgcccaggctggagtgcggtggcgtgatctcagctcactg
s panTro5.chr15              63506776 93 +  83230942 G--TTtt--ttttgtttttttgttttgtttttttttt--gagacggagtctcgctctgttgcccaggctggagtgcggtggcgtgatctcagctcactg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463871 91 +  99763055 G---ttt--ttttgtttttttgttttgttttttttt---gagacggagtctcgctctgttgcccaggctggagtgcggtggcgtgatctcagctcactg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64053 92 -   1709092 G--Tttt--ttttgtttttttgttttgttttttttt---gagatggagtctcgctctgttgcccaggctggagtgcggtggcatgatctcagctcactg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223505 79 - 121039945 ---tttt--ttttgt------------ttttttttt---gtgatggagtcttgctctgttgcccaggctggagtgcggtggcgtgatctcagctcactg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904341 88 + 169600520 TG-tttttgttttgt---tttgttttgttttttt-----gagac--agtctcgctctgttgcccaggctggagtgcagtggtgtgatctcagctcactg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431081 89 - 171882078 TGtttttttttttgt---tttgttttgttttttt-----gagac--agtctcactctgttgcccaggctggagtgcagtggtgtgatctcaactcactg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        41830 88 -   2311642 TG-tttttgttatgt---tttgttttgttttttt-----gagac--agtctcgctctgttgcccaggctggagtgcagtggtgtgatctcagctcactg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40012 86 -   1987038 TG-tttt--ttttgt---tttgttttgttttttt-----gagac--agtctcgctctgttgcccaggctggagtgcagtggtgtgatctcagctcactg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21120261 86 -  24206276 TG-tttt--ttttgt---tttgttttgttttttt-----gagac--agtctcactctgttgcccaggctggagtgcagtggtgtgatctcagctcactg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        42187 87 -   1397330 TGttttt--ttttgt---tttgttttgttttttt-----gagac--agtctcgctctgttgcccaggctggagtgcagtggtgtgatctcagctcactg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        58895 78 -   1784207 t--tttg--ttttgt---tttgttttg---tttt-----gagac--ggtctcgctctgttgcccaggctggagtgcagtg----gatctcagctcactg
i colAng1.NW_012117110v1    C 0 C 0
s canFam3.chr3               54425321 39 +  91889043 ------------------------------------AAGGAGAC---ATCACATCCCTTAG----AGCCAGTGTG-----------------CTCACTG
i canFam3.chr3              C 0 C 0
e micMur3.chr9              113286393  0 + 116334831 C
e proCoq1.NW_012142813v1        31801  0 +     80520 C
e aotNan1.NW_018505940v1     40663493  0 +  42888418 C
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261511  0 + 158406734 C
e dasNov3.JH570731            1820603  0 +   3943991 C
e cebCap1.NW_016107610v1       635392  0 -   2910086 C
e otoGar3.GL873530             648627  0 -  36342412 C
e saiBol1.JH378108           50492409  0 +  54856640 C

a score=483233.000000
s hg38.chr15_KI270850v1_alt    353468 85 +    430880 caagctctgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcacctgccaccacacccgg
s panTro5.chr15              63506869 85 +  83230942 caagctctgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcacctgccaccacacccgg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80463962 85 +  99763055 caagctctgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcacctgccaccacacccgg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64145 85 -   1709092 caagctctgcctcccgagttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcacctgccaccacacccgg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223584 85 - 121039945 caagctctgcctctagggttcatgccattctcctgcctcagcctcccaagtagctgggactacaggcacctgccaccgcacccag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904429 85 + 169600520 caagctccgcctcccgggttcacgccattctcctgcctcagcttcctgagcagctgggaatacaggcaaccgccaccacacttgg
i rheMac8.chr7              C 0 I 9
s macFas5.chr7              108431170 85 - 171882078 caagctccgcctcccgggttcacgccattctcctgcctcagcttcctgagcagctgggaatacaggcaaccgccaccacacttgg
i macFas5.chr7              C 0 I 8
s macNem1.NW_012011945v1        41918 85 -   2311642 caagctccgcctcccaggttcacgccattctcctgcctcagcttcctgagcagctgggaatacaggcaaccgccaccacacttgg
i macNem1.NW_012011945v1    C 0 I 1
s cerAty1.NW_012002657v1        40098 85 -   1987038 caagctccgcctcccgggttcacgccattctcctgcctcagcttcctgagcagctgggaatacaggcaaccgccaccacactcgg
i cerAty1.NW_012002657v1    C 0 I 3
s chlSab2.chr29              21120347 85 -  24206276 caagctccgcctcccgggttcacgccattctcctgcctcagcttcccgagcagctgggaatacaggcaactgccaccacactcgg
i chlSab2.chr29             C 0 I 3
s manLeu1.NW_012106908v1        42274 85 -   1397330 caagctccgcctcccgggttcacgccattctcctgcctcagcttcctgagcagctgggaatacaggcaaccgccaccacactcgg
i manLeu1.NW_012106908v1    C 0 T 6745
s colAng1.NW_012117110v1        58973 85 -   1784207 caagctccgcctcccgggttcacgccattctcctgcctcagcttcctgagcagctgggactacaggcaactgccaccacactcag
i colAng1.NW_012117110v1    C 0 C 0
e micMur3.chr9              113286393  0 + 116334831 C
e proCoq1.NW_012142813v1        31801  0 +     80520 C
e aotNan1.NW_018505940v1     40663493  0 +  42888418 C
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261511  0 + 158406734 C
e dasNov3.JH570731            1820603  0 +   3943991 C
e canFam3.chr3               54425360  0 +  91889043 C
e cebCap1.NW_016107610v1       635392  0 -   2910086 C
e otoGar3.GL873530             648627  0 -  36342412 C
e saiBol1.JH378108           50492409  0 +  54856640 C

a score=29853.000000
s hg38.chr15_KI270850v1_alt    353553 17 +    430880 ctaattttgtgtgtgtg
s panTro5.chr15              63506954 17 +  83230942 ctaattttgtgtgtgtg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464047 17 +  99763055 ctaattttgtgtgtgtg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64230 17 -   1709092 ctaattttgtgtgtgtg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223669 17 - 121039945 ctaattttgtgtgtgtg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904523 16 + 169600520 -tttttttttttttttt
i rheMac8.chr7              I 9 C 0
s macFas5.chr7              108431263 16 - 171882078 -tttttttttttttttt
i macFas5.chr7              I 8 C 0
s macNem1.NW_012011945v1        42004  8 -   2311642 ---------tttttttt
i macNem1.NW_012011945v1    I 1 C 0
s cerAty1.NW_012002657v1        40186 16 -   1987038 -tttttttttttttttt
i cerAty1.NW_012002657v1    I 3 C 0
s chlSab2.chr29              21120435 16 -  24206276 -tttttttttttttttt
i chlSab2.chr29             I 3 C 0
s colAng1.NW_012117110v1        59058 17 -   1784207 ctaattttttttttttt
i colAng1.NW_012117110v1    C 0 C 0
e micMur3.chr9              113286393  0 + 116334831 C
e proCoq1.NW_012142813v1        31801  0 +     80520 C
e aotNan1.NW_018505940v1     40663493  0 +  42888418 C
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261511  0 + 158406734 C
e dasNov3.JH570731            1820603  0 +   3943991 C
e canFam3.chr3               54425360  0 +  91889043 C
e cebCap1.NW_016107610v1       635392  0 -   2910086 C
e otoGar3.GL873530             648627  0 -  36342412 C
e manLeu1.NW_012106908v1        42359 6745 -   1397330 T
e saiBol1.JH378108           50492409  0 +  54856640 C

a score=88149.000000
s hg38.chr15_KI270850v1_alt    353570 19 +    430880 tgtgtttttagcagagatg
s panTro5.chr15              63506971 17 +  83230942 tgt--ttttagcagagacg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464064 17 +  99763055 tgt--ttttagcagagacg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64247 19 -   1709092 tgtgtttttagcagagacg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223686 17 - 121039945 tgt--ttttagcagagacg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904539 19 + 169600520 tgtatttttagtagagacg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431279 19 - 171882078 tgtatttttagtagagacg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42012 19 -   2311642 tgtatttttagtagagacg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40202 19 -   1987038 tgtatttttagtagagaca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21120451 19 -  24206276 tgtatttttaggagagacg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        35614 19 -   1397330 tgtatttttagtagagacg
i manLeu1.NW_012106908v1    T 6745 C 0
s colAng1.NW_012117110v1        59075 19 -   1784207 tgtatttttagtagagatg
i colAng1.NW_012117110v1    C 0 C 0
e micMur3.chr9              113286393  0 + 116334831 C
e proCoq1.NW_012142813v1        31801  0 +     80520 C
e aotNan1.NW_018505940v1     40663493  0 +  42888418 C
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261511  0 + 158406734 C
e dasNov3.JH570731            1820603  0 +   3943991 C
e canFam3.chr3               54425360  0 +  91889043 C
e cebCap1.NW_016107610v1       635392  0 -   2910086 C
e otoGar3.GL873530             648627  0 -  36342412 C
e saiBol1.JH378108           50492409  0 +  54856640 C

a score=562608.000000
s hg38.chr15_KI270850v1_alt    353589 103 +    430880 gggtttcaccgtgttagccaggatggtcttgatctcctgaccttgtgatccacccgcctcagcctcccaaagggctggaattacaggcgtgagccactgcgcc
s panTro5.chr15              63506988 103 +  83230942 gggtttcaccgtgttagccaggatggtcttgatctcctgaccttgtgatccacccgcctcagcctcccaaagggctggaattacaggcgtgagccactgcgcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464081 103 +  99763055 gggtttcaccgtgttagccaggatggtcttgatctcctgaccttgtgatccacccgcctcagcctcccaaagggctggaattacaggcgtgagccactgcgcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64266 103 -   1709092 gggtttcaccgtgttagccaggatggtctcaatctcctgaccttgtgatccgcccacctcagcctcccaaagggctggaattacaggcgtgagccactgcgcc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223703 103 - 121039945 gggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatccgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccactgtgcc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904558 103 + 169600520 gggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgaactgcccacctcggcctcccaaagtgctggaattacaggtgtgagctactgcacc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431298 103 - 171882078 gggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgaactgcccacctcggcctcccaaagtgctggaattacaggtgtgagctactgcacc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42031 103 -   2311642 gggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgaactgcccacctcggcctcccaaagtgctggaattacaggtgtgagctactgcacc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40221 103 -   1987038 gggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgaactgcccacctcggcctcccaaagtgctggaattacaggtgtgagctactgcacc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21120470 103 -  24206276 gggtttcaccatgttagccaggatggtctcgatctcctgaccttgtgaactgcccacctcggcctcccaaagtgctggaattacaggtgtgagccactgcacc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        35633 103 -   1397330 gggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgaactgcccacctcggcctcccaaagtgctggaattacaggtgtgagctaccgcacc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59094 103 -   1784207 gggtttcactgtgttagccaggatggtctcgatctcctgacctcataatcttcccgtctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcc
i colAng1.NW_012117110v1    C 0 C 0
s canFam3.chr3               54425360  28 +  91889043 AGGCTACACCCTTTCCATCAAGGTTATT---------------------------------------------------------------------------
i canFam3.chr3              C 0 C 0
e micMur3.chr9              113286393   0 + 116334831 C
e proCoq1.NW_012142813v1        31801   0 +     80520 C
e aotNan1.NW_018505940v1     40663493   0 +  42888418 C
e mm10.chr7                  81367719 190 + 145441459 I
e calJac3.chr6               22261511   0 + 158406734 C
e dasNov3.JH570731            1820603   0 +   3943991 C
e cebCap1.NW_016107610v1       635392   0 -   2910086 C
e otoGar3.GL873530             648627   0 -  36342412 C
e saiBol1.JH378108           50492409   0 +  54856640 C

a score=35491.000000
s hg38.chr15_KI270850v1_alt    353692 5 +    430880 cagcc
s panTro5.chr15              63507091 5 +  83230942 cagcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464184 5 +  99763055 cagcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64369 5 -   1709092 cggcc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223806 5 - 121039945 cggcc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904661 5 + 169600520 cagcc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431401 5 - 171882078 cagcc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42134 5 -   2311642 cagcc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40324 5 -   1987038 cagcc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21120573 5 -  24206276 cagcc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        35736 5 -   1397330 cagcc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59197 5 -   1784207 cagcc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22261511 5 + 158406734 CAATT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50492409 5 +  54856640 CAATT
i saiBol1.JH378108          C 0 C 0
s canFam3.chr3               54425388 5 +  91889043 CAACT
i canFam3.chr3              C 0 C 0
e micMur3.chr9              113286393 0 + 116334831 C
e proCoq1.NW_012142813v1        31801 0 +     80520 C
e aotNan1.NW_018505940v1     40663493 0 +  42888418 C
e mm10.chr7                  81367719 190 + 145441459 I
e dasNov3.JH570731            1820603 0 +   3943991 C
e cebCap1.NW_016107610v1       635392 0 -   2910086 C
e otoGar3.GL873530             648627 0 -  36342412 C

a score=288616.000000
s hg38.chr15_KI270850v1_alt    353697 17 +    430880 TAAGGACACAATGTTGA
s panTro5.chr15              63507096 17 +  83230942 TAAGGACACAATGTTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464189 17 +  99763055 TAAGGACACAATGTTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64374 17 -   1709092 TAAGGACACAGTGTTGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223811 17 - 121039945 TAAGGACACAATGTTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904666 17 + 169600520 TAAGGACACAATGTTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431406 17 - 171882078 TAAGGACACAATGTTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42139 17 -   2311642 TAAGGACACAATGTTGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40329 17 -   1987038 TAAGGACACAACGTTGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21120578 17 -  24206276 TAAGGACACAATGTTGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        35741 17 -   1397330 TAAGGACACAATGTTGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59202 17 -   1784207 TAAGGACACAATGTTGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22261516 17 + 158406734 TAAGGACACAATGTTGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50492414 17 +  54856640 TAAGGACACAATGTTGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       635392 17 -   2910086 TAAGGACACAATGTTGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40663493 17 +  42888418 TAAGGACACAATGTTGA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113286393 17 + 116334831 TAAGGACACAGTGTTGA
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        31801 17 +     80520 TAAGGACACAATGTTGA
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             648627 17 -  36342412 TAAGGACACAATGTTGA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54425393 17 +  91889043 TATGGACACAATACTGA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81367719 190 + 145441459 I
e dasNov3.JH570731            1820603  0 +   3943991 C

a score=1124522.000000
s hg38.chr15_KI270850v1_alt    353714 75 +    430880 CTT-AGAGTGTAATACAGATTTAGGGG--AATAAACCTTAAC-----TCATCCCTACCCAGCCCATCGCCAAAACAGAGGTTT
s panTro5.chr15              63507113 75 +  83230942 CTT-AGAGTGTAATACAGATTTAGGGG--AATAAACCTTAAC-----TCATCCCTACCCAGCCCATCGCCAAAACAGAGGTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464206 75 +  99763055 CTT-AGAGTGTAATACAGATTTAGGGG--AATAAACCTTAAC-----TCATCCCTACCCAGCCCATCGCCAAAACAGAGGTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64391 75 -   1709092 CTT-AGAGTGTAATACAGATTTAGGGG--AATAAACCTTAAC-----TCAACCCTACCCAGCCCATCACCAAAACAGAGGTTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223828 75 - 121039945 CTT-AGAGTGTAATACAGATTTAGGGG--AATAAACCTTAAC-----TCATCCCTACCCAGCCCATCTTCAAAACAGAGGTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904683 75 + 169600520 CTT-AGAGTGTAATACAGATTTAGGGG--AATAAACTTTAAC-----TCATCCCTACCCAGCCCATCACCAAAACAGAGGTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431423 75 - 171882078 CTT-AGAGTGTAATACAGATTTAGGGG--AATAAACTTTAAC-----TCATCCCTACCCAGCCCATCACCAAAACAGAGGTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42156 75 -   2311642 CTT-AGAGTGTAATACAGATTTAGGGG--AATAAACTTTAAC-----TCATCCCTACCCAGCCCATCACCAAAACAGAGGTTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40346 75 -   1987038 CTT-AGAGTGTAATACAGATTTAGGGG--AATCAACTTTAAC-----TCATCCCTACCCAGTCCATCACCAAAACAGAGGTTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21120595 75 -  24206276 CTT-AGAGTGTAATACAGATTTAGGGG--AATAAACTTTAAC-----TCATCCCTACCCAGCCCATCACCAAAACAGAGGTTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        35758 75 -   1397330 CTT-AGAGTGTAATACAGATTTAGGGG--AATCAACTTTAAC-----TCATCCCTACCCAGCCCATCACCAAAACAGAGGTTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59219 75 -   1784207 CTT-AGAGTGTAATACAGATTTAAGGG--AATAAACTTTAAC-----TCATCCCTACCCAGCCGATCACCAAAACAGAGGTTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22261533 76 + 158406734 CTTAAGAGTGTAATACAGATTTAGGGG--ACTAAACCTTAAC-----TCGTCCCTACCCAGCTCATAACCAAAACAGAGGTTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50492431 74 +  54856640 CTT--GAGTATAATACAGATTTAGGGG--ACTAAACCTTAAC-----TCATCCCTACCCAGCCCATCACCAAAACAGAGGTTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       635409 76 -   2910086 CTTAAGAGTGTAATACAGATTTAGGGG--ACTAAACCTTAAC-----TCATCCCTACCCAGCCCATCACCAAAACAGAGGTTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40663510 75 +  42888418 CTT-AGAGTGTAATACAGATTTAGGGG--ACTAAACCTTAAC-----TCATCCCTACCCAGCCCAACACCAAAACAGAGGTTT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113286410 74 + 116334831 CTT-AGA-TGTACCTCAGACTTAGGGG--AATAAACCTTAGT-----TCATCCCTACCCAGCCCATTGCTAAAACAGAGGTTT
i micMur3.chr9              C 0 I 542
s proCoq1.NW_012142813v1        31818 74 +     80520 CTT-AGA-TGCACCTCAGACTTAGGGG--AATAAACCTTAGT-----TCATCCCTACCCAAACCATTGCGAAAAAAGAGGTTT
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             648644 74 -  36342412 CAT-AGA-TGAAACTCAGATTTAGGGG--AATAAACCTTAGC-----TCAACCATACCTAGCCCATCACTAAAGCAGAGGTTT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54425410 76 +  91889043 CTT-AGAG-GCAACTTGGAACTAGAGGAAAAAAAATCTTAGT-----TCATTCCAACCCAGCCCATCACCAAAACAGAGGCTG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1820603 79 +   3943991 CTT-AGA-CACAATTCAGACTTAGGGG--AAGAATCCTAGGTTACAATCCTCTCCCCACTGCTCATCACCAAAACAGATGTTT
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81367719 190 + 145441459 I

a score=17290.000000
s hg38.chr15_KI270850v1_alt    353789 1 +    430880 A
s panTro5.chr15              63507188 1 +  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464281 1 +  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64466 1 -   1709092 A
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223903 1 - 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904758 1 + 169600520 A
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              108431498 1 - 171882078 A
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011945v1        42231 1 -   2311642 A
i macNem1.NW_012011945v1    C 0 I 1
s cerAty1.NW_012002657v1        40421 1 -   1987038 A
i cerAty1.NW_012002657v1    C 0 I 1
s chlSab2.chr29              21120670 1 -  24206276 A
i chlSab2.chr29             C 0 I 1
s manLeu1.NW_012106908v1        35833 1 -   1397330 A
i manLeu1.NW_012106908v1    C 0 I 1
s colAng1.NW_012117110v1        59294 1 -   1784207 A
i colAng1.NW_012117110v1    C 0 I 1
s calJac3.chr6               22261609 1 + 158406734 A
i calJac3.chr6              C 0 I 1
s saiBol1.JH378108           50492505 1 +  54856640 A
i saiBol1.JH378108          C 0 I 1
s cebCap1.NW_016107610v1       635485 1 -   2910086 A
i cebCap1.NW_016107610v1    C 0 I 1
s aotNan1.NW_018505940v1     40663585 1 +  42888418 A
i aotNan1.NW_018505940v1    C 0 I 1
s proCoq1.NW_012142813v1        31892 1 +     80520 A
i proCoq1.NW_012142813v1    C 0 I 143
s otoGar3.GL873530             648718 1 -  36342412 A
i otoGar3.GL873530          C 0 I 3
s canFam3.chr3               54425486 1 +  91889043 A
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1820682 1 +   3943991 A
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113286484 542 + 116334831 I
e mm10.chr7                  81367719 190 + 145441459 I

a score=667878.000000
s hg38.chr15_KI270850v1_alt    353790  73 +    430880 -AAAAC--CAGT-GACTCACCGCATCACAT------CTGCGACAATACTTCTTCCCTGAGTCTCAA-----TTTCTTCAAAGAGA---AAA----------------
s panTro5.chr15              63507189  73 +  83230942 -AAAAC--CAGT-GACTCACCGCATCACAT------CTGCAACAATACTTCTTCCCTGAGTCTCAA-----TTTCTTCAAAGAGA---AAA----------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464282  73 +  99763055 -AAAAC--CAGT-GACTCACCGCATCACAT------CTGCAACAATACTTCTTCCCTGAGTCTCAA-----TTTCTTCAAAGAGA---AAA----------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64467  73 -   1709092 -AAAAC--CAGT-GACTCACCGCATCACAT------CTGCGACAATACTTCTTCCCTGAGTCTCAA-----TTTCTTCAAAGAGA---AAA----------------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223904  75 - 121039945 -AAAACCACAGT-GACTCACCACATCACAT------CTGCGACAGTACTTCTTCCCTGAGTCTCAA-----TTTCTTCAAAGAGA---AAA----------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904760  65 + 169600520 -AAAACCACAGT-GACTCACCACATCACAT------CTGCGACAGTACTTCTTCCCTGAGTCTCAA-----TTTCTTC-----------------------------
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              108431500  65 - 171882078 -AAAACCACAGT-GACTCACCACATCACAT------CTGCGACAGTACTTCTACCCTGAGTCTCAA-----TTTCTTC-----------------------------
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011945v1        42233  65 -   2311642 -AAAACCACAGT-GACTCACCACATCACAT------CTGCAACAGTACTTCTTCCCTGAGTCTCAA-----TTTCTTC-----------------------------
i macNem1.NW_012011945v1    I 1 C 0
s cerAty1.NW_012002657v1        40423  65 -   1987038 -AAAACCACAGT-GACTCACCACATCACAT------CTGCGACAGTACTTCTTCCCTGAGTCTCAA-----TTTCTTC-----------------------------
i cerAty1.NW_012002657v1    I 1 C 0
s chlSab2.chr29              21120672  65 -  24206276 -AAAACCACAGT-GACTCACCACATCACAT------CTGTGACAGTACTTCTTCCCTGAGTCTCAA-----TTTCTTC-----------------------------
i chlSab2.chr29             I 1 C 0
s manLeu1.NW_012106908v1        35835  65 -   1397330 -AAAACCACAGT-GACTCACCACATCACAT------CTGCGACAGTACTTCTTCCCTGAGTCTCAA-----TTTCTTC-----------------------------
i manLeu1.NW_012106908v1    I 1 C 0
s colAng1.NW_012117110v1        59296  75 -   1784207 -AAAACCACAGT-GACTCACCACATCACAT------CTGCGACAGTACTTCTTCCCTGAGTCTCAA-----TTTCTTCAAAGAGA---AAA----------------
i colAng1.NW_012117110v1    I 1 C 0
s calJac3.chr6               22261611  75 + 158406734 -AGAACAACAGT-AACTCACCACATCACAT------TTGTGACAGTacttcttcgctgagtctcaa-----tttcttcaaagaga---aaa----------------
i calJac3.chr6              I 1 C 0
s saiBol1.JH378108           50492507  75 +  54856640 -AGAACCACAGT-AACTCACCACATCACAT------TTGTGACAGTACTTCTTCCCTGGGTCTCAA-----TTTCTTCAAAGAGA---AAA----------------
i saiBol1.JH378108          I 1 C 0
s cebCap1.NW_016107610v1       635487  75 -   2910086 -AGAACCACAGT-AACTCGCCACATCACAT------TTGTGACAGTACTTCTTCCCTGAGTCTCAA-----TTTCTTCAAAGAGA---AAA----------------
i cebCap1.NW_016107610v1    I 1 C 0
s aotNan1.NW_018505940v1     40663587  75 +  42888418 -AGAACCACAGT-AACTCACCACATCACAT------TTGTGACAGTACTTCTTCCCTGAGTCTCAA-----TTTCTTCCAAGAGA---AAA----------------
i aotNan1.NW_018505940v1    I 1 C 0
s otoGar3.GL873530             648722  73 -  36342412 ---AAACGCAGT-AACTTGCCACACCAAAT-------TGTGACAATACTCCTACT---ACTTTCAG---ACTTTCTTCTAGAGGA-TTAAA----------------
i otoGar3.GL873530          I 3 I 11
s canFam3.chr3               54425488  86 +  91889043 -AGAAG--TAGC-TACTAGCCTTGTCAAATAGAGTTACTTGACAAAACCCCTTCCGCTGGTTTCAA-ATACTTTCTTTAAAGAGAACTAAA----------------
i canFam3.chr3              I 1 I 13
s dasNov3.JH570731            1820683 101 +   3943991 GGGACTTACTGTGGACTTGCTTCATCAAAT------CTGTGACAATACTCCTTACGCTAGTTTCAAAAAACCTTCTTCAAAGGGAACTAAACATATGAAATAGATAC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113286484 542 + 116334831 I
e proCoq1.NW_012142813v1        31893 143 +     80520 I
e mm10.chr7                  81367719 190 + 145441459 I

a score=518193.000000
s hg38.chr15_KI270850v1_alt    353863 52 +    430880 AGGTTGAAGAA----------AGCTCCTCTGCTTGAGGAGGGGCAGGGTGGAA----ATCACTCTG
s panTro5.chr15              63507262 52 +  83230942 AGGTTGAAGAA----------AGCTCCTCTGCTTGAGGAGGGGCAGGGTGGAA----ATCACTCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464355 52 +  99763055 AGGTTGAAGAA----------AGCTCCTCTGCTTGAGGAGGGGCAGGGTGGAA----ATCACTCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64540 52 -   1709092 AGGTTGAAGAA----------AGCTCCTCTGCTTGAGGAGGGGCAGAGTGGAA----ATCACTCTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17223979 52 - 121039945 AGGTTGAAGAA----------AGCTCCTCTGCTTGAGGAGGGGCAGGGTGGGA----AACACTCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904825 45 + 169600520 ----TGAAGAA----------AGCTCCTCTGCTT---GAGGGGCAGGGTGGAA----AACACTCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431565 45 - 171882078 ----TGAAGAA----------AGCTCCTCTGCTT---GAGGGGCAGGGTGGAA----AACACTCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42298 45 -   2311642 ----TGAAGAA----------AGCTCCTCTGCTT---GAGGGGCAGGGTGGAA----AACACTCTG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40488 45 -   1987038 ----TGAAGAA----------AGCTCCTCTGCTT---GAGGGGCAGGGTGGAA----AACACTCTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21120737 45 -  24206276 ----TGAAGAA----------AGCTCCTGTGTTT---GAGGGGCAGGGTGGAA----AACACTCTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        35900 45 -   1397330 ----TGAAGAA----------AGCTCCTCTGCTT---GAGGGGCAGGGTGGAA----AACACTCTG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59371 49 -   1784207 AGATTGAAGAA----------AGCTCCTCTGCTT---GAGGGGCAGGGTGGAA----ATCACTCTG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22261686 52 + 158406734 aggctgaagaa----------acctgctctgcctgagcagggtctgggtggaa----atcaCCCTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50492582 52 +  54856640 AGGCTGAAGAA----------AACTGCTCTGATTGAGCAGGGGCAGGGTGGAA----ATCACCCTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       635562 52 -   2910086 AGTCTGAAGAA----------AACTGCTCTGCCTGAGCAGGAGCAGGGTGGAA----ATTACCCTG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40663662 52 +  42888418 ATGCTGAAGAA----------AGCTGCTCTGCCCGAGCAGGGGCAGAGTGGAA----ATCACCCTG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113287026 54 + 116334831 AGGCTGAAAAA----------AGCTACTCTGCTTTAGGAGGGATAGGGTGGAAGTATAGCCCTC--
i micMur3.chr9              I 542 C 0
s otoGar3.GL873530             648806 64 -  36342412 AGACTGAAGAATTAAACATACAGATACTCTGCTTTAAGAGGGGCAGCGCAGAAGAGTAGCCCTC--
i otoGar3.GL873530          I 11 C 0
s canFam3.chr3               54425587 44 +  91889043 AGGTGGAAGAG----------AGCTACTCTGCTCGAGGAAGGGCAGGTCAGAA----G--------
i canFam3.chr3              I 13 C 0
s dasNov3.JH570731            1820784 50 +   3943991 AGGCT--AGAG----------AGCTACTCTGGTTAAGGATGAACAGAGTGGAA----GTTCCCCTG
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        31893 143 +     80520 I
e mm10.chr7                  81367719 190 + 145441459 I

a score=1322129.000000
s hg38.chr15_KI270850v1_alt    353915 89 +    430880 TCCTAATCAACCCTCC-CCAGACTCTACTGGGATCTTCAGGGCCACTGCAATACACTCCTACATTCAAGTAC-AGGAGCAAGAAAGAGTGT
s panTro5.chr15              63507314 89 +  83230942 TCCTAATCAACCCTCC-CCAGACTCTACTGGGATCTTCAGGGCCACTGCAATACACTCCTACATTCAAGTAC-AGGAGCAAGAAAGAGTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464407 89 +  99763055 TCCTAATCAACCCTCC-CCAGACTCTACTGGGATCTTCAGGGCCACTGCAATACACTCCTACATTCAAGTAC-AGGAGCAAGAAAGAGTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64592 89 -   1709092 TCCTAATCAACCCTCT-CCAGACTCTACTGGGATCTTCAGGGCCACTGCAATACACTCCTACATTCAAGTAC-AGGAGCAAGAAAGAGTGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224031 89 - 121039945 TCCTAATCAATCCTCC-CCAGACTCTACTGGGATCTTCAGGGCCACTGCAATACACTCCTACATTCAAGTAC-AGGAGCAAGGAAGAATGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904870 89 + 169600520 TCCTAATCAATCCTTC-CCAGACTCTACTGGAATCTTTAGGGCCACTGCAATACACTCCTACATTCAAGTAC-AGGAGCAAGGAAGAGTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431610 89 - 171882078 TCCTAATCAATCCTTC-CCAGACTCTACTGGAATCTTTAGGGCCACTGCAATACACTCCTACATTCAAGTAC-AGGAGCAAGGAAGAGTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42343 89 -   2311642 TCCTAATCAATCCTTC-CCAGACTCTACTGGAATCTTTAGGGCCACTGCAATATACTCCTACATTCAAGTAC-AGGAGCAAGGAAGAGTGT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40533 89 -   1987038 TCCTAATCAATCCTTC-CCAGATTCTACTGGAATCTTTAGGGCCACTGCAATACACTCCTACATTCAAGTAC-AGGAGCAAGGAAGAGTGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21120782 89 -  24206276 TCCTAATCAATCCTCC-CCAGACTCTACTGGAATCTTTAGGGCCACTGCAATACACTCCTACATTCAAGTAC-AGGAGCAAGGACGAGTGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        35945 89 -   1397330 TCCTAATCAATCCTTC-CCAGATTCTACTGGAATCTTTAGGGCCACTGCAATACACTCCTACATTCAAGTAC-AGGAGCAAGGAAGAGTGT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59420 89 -   1784207 TCCTAATCAATCCTCC-CCAGACTCTACTGGAATCTTTAGGGCCACTGCAATACACTCCTACATTCAAGTAC-AGGAGCAAGGAAGAGTGT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22261738 89 + 158406734 TCCTGATCAATCCTCC-ACAGACTCTCCTGGGATCTTCAGGGCCACTGAAATATACTCCCACATTAAAGTAC-AAGGGCAAGGAAGAGTGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50492634 89 +  54856640 TCCTGATCAATCCTCC-CCAGACTCTCCTGGGATCTTCAGGGCCACTGAAATACATTCCTATATTCAAGTAC-AAGGGCAAGGAAGAGTGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       635614 89 -   2910086 TCCTGATCATTCCTCC-CCAGACTCTCCTGGGATCTTCAGGGCCACTGAAATACACGCCTATATTTAAGTAC-AAGGGCAAGGAAGAGTGT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40663714 89 +  42888418 TTCTGATCAATTCTCC-CCAGACTCTCCTGGGATCTTCAGGGCCACTGAAATACACTCCTACATTCAAGTAC-AAGGGCAAGGAAGAGTGT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113287080 88 + 116334831 TCCTGATCAACTCTCCCCCAGAACCTATTGGGATCCTC--AGCCACTGAAATGGATTCCTACATTCAAGCAC-AGGAGCAAGGAAGAGTGT
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        32036 90 +     80520 TCCCAATCAACTCTCCTCCAGAACCTATTGGGATCCTCGGAGCCACTGAAATGGATTCCTACATTCAAGTAC-AGGAGCACGGAAGAGTGT
i proCoq1.NW_012142813v1    I 143 I 18
s otoGar3.GL873530             648870 88 -  36342412 TCCTGATCAA--CTCCTCCAGAATCTGTTGGGATCCTCAGAGCCACTGAAATGTGCTCCCACATTCAAGTAT-AGACGCAAAGAAGGGTCT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54425631 84 +  91889043 ----AGTCA--CTTCC-CTGCCATCTGTTGGGATCCTCACAGCCATGGGTATATACTTCCATATTCAAGTACGAAGAGCAGGAAAGAGTGC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1820834 89 +   3943991 CCCTGACCAAGCCTCC-CCAGAATCTTTTGGCATCCTCAGAGCCACTGAAATATATTCCTGCATCCAAGTAA-AGGAGCTGGAAAGAGTAC
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81367719 190 + 145441459 I

a score=16511.000000
s hg38.chr15_KI270850v1_alt    354004 1 +    430880 C
s panTro5.chr15              63507403 1 +  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464496 1 +  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64681 1 -   1709092 C
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224120 1 - 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904959 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431699 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42432 1 -   2311642 C
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40622 1 -   1987038 C
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21120871 1 -  24206276 C
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36034 1 -   1397330 C
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59509 1 -   1784207 C
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22261827 1 + 158406734 C
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50492723 1 +  54856640 C
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       635703 1 -   2910086 C
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40663803 1 +  42888418 C
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113287168 1 + 116334831 C
i micMur3.chr9              C 0 I 199
s otoGar3.GL873530             648958 1 -  36342412 C
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54425715 1 +  91889043 T
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1820923 1 +   3943991 C
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        32126 18 +     80520 I
e mm10.chr7                  81367719 190 + 145441459 I

a score=423782.000000
s hg38.chr15_KI270850v1_alt    354005 35 +    430880 TCACTGAATTATATACCAACCACATAGAAAAACGG
s panTro5.chr15              63507404 35 +  83230942 TCACTGAATTATATACCAACCACATAGAAAAACGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464497 35 +  99763055 TCACTGAATTATATACCAACCACATAGAAAAACGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64682 34 -   1709092 TCACTGAATTATATACCAACCACATAGAAAAAC-G
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224121 35 - 121039945 TCACTGAATTATATACCAACCACGTAGAAAAACAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904960 35 + 169600520 TCACTGAATTATATACCAACCACGAAGAAAAACAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431700 35 - 171882078 TCACTGAATTATATACCAACCACGTAGAAAAACAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42433 35 -   2311642 TCACTGAATTATATACCAACCACGTAGAAAAACAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40623 35 -   1987038 TCACTGAATTATATACCAACCACATAGAAAAACAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21120872 35 -  24206276 TCACTGAATTATATACCAACCACGTAGAAAAACAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36035 35 -   1397330 TCACTGAATTATACACCAACCACATAGAAAAACAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59510 35 -   1784207 TCACTGAATTATATATCAACCACGTAGAAAAACAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22261828 35 + 158406734 TCACTGAATTATATACCAACCACGTAGAAAAACAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50492724 35 +  54856640 TCACTGAATTATATGCCAACCACATAGAAAAACAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       635704 35 -   2910086 TCACTGAATTATATACCAACCACGTACAAAAACAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40663804 35 +  42888418 TCACTGAATTATATACCAACCACGCAGAAAAACAG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             648959 19 -  36342412 ----------------CAACCACACAGAAAGACAG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54425716 35 +  91889043 TCGCTCAACACCATCCCAACCACACAGAAGAACAG
i canFam3.chr3              C 0 I 2
s dasNov3.JH570731            1820924 30 +   3943991 TTGCTGG-----ACACTATCCACATAGAAAAACGG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113287169 199 + 116334831 I
e proCoq1.NW_012142813v1        32126 18 +     80520 I
e mm10.chr7                  81367719 190 + 145441459 I

a score=521279.000000
s hg38.chr15_KI270850v1_alt    354040 43 +    430880 GGAAAGGACTTGGATTGATGGCTCAGAAAGGGGCAATGCCATC
s panTro5.chr15              63507439 43 +  83230942 GGAAAGGACTTGGATTGATGGCTCAGAAAGGGGCAATGCCATC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464532 43 +  99763055 GGAAAGGACTTGGATTGATGGCTCAGAAAGGGGCAATGCCATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64716 43 -   1709092 GGAAAGGACTTGGATTGATGGCTCAGAAAGGGGCAATGCCATC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224156 43 - 121039945 GGAAAGGACTTGGATTGATGGCTCAGAAAGGGGCAATGCCATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60904995 39 + 169600520 GGAAAGGACTTGGATTCATGGCTCAGAAAGGGGCAATGC----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431735 39 - 171882078 GGAAAGGACTTGGATTCATGGCTCAGAAAGGGGCAATGC----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42468 39 -   2311642 GGAAAGGACTTGGATTCATGGCTCAGAAAGGGGCAATGC----
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40658 39 -   1987038 GGAAAGGACTTGGATTCATGGCTCAGAAAGGGGCAATGC----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21120907 39 -  24206276 GGAAAGGACTTGGATTCACGGCTCAGAAAGGGGCAATGC----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36070 39 -   1397330 GGAAAGGACTTGGATTCATGGCTCAGAAAGGGGCAATGC----
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59545 39 -   1784207 GGAAAGGACTTGGATTCATGGCTCAGAAAGGGGCAATGC----
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22261863 43 + 158406734 GGAAAGGACTTGGATTGATGGCTAGGAAAGAGGCAATGCCATC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50492759 43 +  54856640 GGAAAGGACTTGGATTGATGGCTCAGAAGGGGGCAATGCCATC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       635739 43 -   2910086 GGAAAGGACTCGGATTGATGGCTCGGAAGGGGGCAATGCCATC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40663839 43 +  42888418 GGAAATGACCTGGACTGATGGCTCGGAAAGGGGCAATGCCATC
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        32144 43 +     80520 GGAAAGGGCTTGGACTGACAGCTCAGAAAGGGGCAATGCCATC
i proCoq1.NW_012142813v1    I 18 I 186
s otoGar3.GL873530             648978 32 -  36342412 GGAGAGGGCT----------GCACTTGGAGAGGCAGTA-CATG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54425753 43 +  91889043 GAAAAGAGCTTAGATCAATGGCTCAGAAAGGTGCAATGCCATC
i canFam3.chr3              I 2 C 0
s dasNov3.JH570731            1820954 41 +   3943991 -GGAAGAGTTTGGACT-ATGGCTCAGAAAGGGACAATGCCATC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113287169 199 + 116334831 I
e mm10.chr7                  81367719 190 + 145441459 I

a score=683179.000000
s hg38.chr15_KI270850v1_alt    354083 127 +    430880 --CTAGAGA-ATAGGATCA---GGGTGCCCCAGAATTA--ACACGTGGG--ATGTCAGCATCTCCATGCATCAGTTTCCTGCAAATATTAAATCAGAAG-------GGAT-----ATACTG-TA--AATTTGACTAGAAGATACCAAGAAGA
s panTro5.chr15              63507482 127 +  83230942 --CTAGAGA-ATAGGATCA---GGGTGCCCCAGAATTA--ACACGTGGA--ATGTCAGCATCTCCATGCATCAGTTTCCTGCAAATATTAAATCAGAAG-------GGAT-----ATACTG-TA--AATTTGACTAGAAGATACCAAGAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464575 127 +  99763055 --CTAGAGA-ATAGGATCA---GGGTGCCCCAGAATTA--ACACGTGGG--ATGTCAGCATCTCCATGCATCAGTTTCCTGCAAATATTAAATCAGAAG-------GGAT-----ATACTG-TA--AATTTGACTAGAAGATACCAAGAAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64759 127 -   1709092 --CTAGAGA-ATAGGATCA---GGGTGCCCCAGAATTA--ACACGTAGG--ATGTCAGCATCTCCATGCATCAGTTTCCTGCAAATATTAAATCAGAAG-------GGAT-----ATACTG-TA--AATTTGACTAGAAGATACCAAGAAGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224199 126 - 121039945 --CTAGAGA-ATAGGATCA---GGGTGCCCCAGAATTA--ACACGTGGG--ATGTCAGCATCTCCATGCATCAGTTTCCTGCAAATATTAAATCAGAAG-------GGAT-----ATACTG-TA--AATTTGACTAGAAGATACCAAGAAG-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905034  67 + 169600520 ----------------------------------------------------------------------TCAGTTTCCTGCAAATATTCAATCAGAAG-------GCAT-----ATACTG-TA--AGTTTGACTAGAAGATACCGAGAAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431774  67 - 171882078 ----------------------------------------------------------------------TCAGTTTCCTGCAAATATTCAATCAGAAG-------GCAT-----ATACTG-TA--AGTTTGACTAGAAGATACCGAGAAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42507  67 -   2311642 ----------------------------------------------------------------------TCAGTTTCCTGCAAATATTCAATCAGAAG-------GGAT-----ATACTG-TA--AGTTTGACTAGAAGATACCGAGAAGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40697  67 -   1987038 ----------------------------------------------------------------------TCAGTTTCCTGCAAATATTCAATCAGAAG-------GGAT-----ATACTG-TA--AGTTTGACTAGAAGATACCGAGAAGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21120946  67 -  24206276 ----------------------------------------------------------------------TCAGTTTCCTGCAAATATTCAATCAGAAG-------GGAT-----ATACTG-TA--AGTTTGACTAGAAGATACTGAGAAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36109  67 -   1397330 ----------------------------------------------------------------------TCAGTTTCCTGCAAATATTCAATCAGAAG-------GGAT-----ATACTG-TA--AGTTTGACTAGAAGATACCGAGAAGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59584  68 -   1784207 ----------------------------------------------------------------------TCAGTTTCCTGCAAATGTTCAATCAGAAG-------GGAT-----ATACTGTTA--AGTTTGACTAGAAGATACCGAGAAGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22261906 129 + 158406734 --TTAGAGA-ATAGGATCA---GGGTGCCCCAGAACTAACACATGTGGG--ATGTCAGCATCTCCATGCATCAGTTTCCTGCAAATATTAAATCAGAAG-------GGAT-----ATATTG-TA--AGTTTGACTAGTAGACACTGAGAAGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50492802 127 +  54856640 --CTAGAGA-ATAGGATCA---GCGTGCCCCAGAATTA--ACATGTGGG--ATGTTAGCATCTCCATGCATCAGTTTCCTGCAAATATTAAATCAGAAG-------GGAT-----ATACTC-TA--AGTTTGACTAGTAGACACTGAGAAGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       635782 129 -   2910086 --CTAGAGA-ATAGGATCA---GGGTGCCCCAGAATTAACACATGTGGG--ATGTCAGCATCTCCATGTATCAGTTACCTGCAAATATTAAATCAGAAG-------GGAT-----ATACTC-TA--AGTTTGACTAGTAGACACTGAGAAGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40663882 129 +  42888418 --CTAGAGA-ATAGGATCA---GGGTGCCCCAGAATTAACACATGTGGG--ATGTCAGCATCTCCATGCATCAGTTTCCTGCAAATATTAAATCAGAAG-------GGAT-----ATACTG-TA--AGTTTGACTAGTAGACACTGAGAAGA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             649010  94 -  36342412 ---TGGCAG-AGCAGACCA---GGGTGCCACAGAGCA---ACACCTGGG-CAAGCTGGCGTCTCTA----CCAGAT----------------------------------------TACTG-CA--GATATGACCAGAAGATGCTGAGAAGA
i otoGar3.GL873530          C 0 I 14
s canFam3.chr3               54425796 135 +  91889043 ---TGCAGACATAAGATAA---GGGTGCCCCAGGATTAACACACTTGGGTCACATCAGCACCTCCAT---GCAGTTTCCTGCAAATATGACAGTGGAAG-------GGGCCAAGGATATTG-TAGGAGTTTGGCTACAAGATACAAGGAAGA
i canFam3.chr3              C 0 I 16
s dasNov3.JH570731            1820995 127 +   3943991 CCTCAGAGAAGGAAGATCAATCAGGTGCCCTAGAATTAACACACCTGAG--ATAAT--------------TCATTTTCCTGC-AATACTGAATTGGAAGGGGCCAAGGAT-----ATAGTA-TG--AGCCTGACTAGAAGAGACAGGGAAGA
i dasNov3.JH570731          C 0 I 11
e micMur3.chr9              113287169 199 + 116334831 I
e proCoq1.NW_012142813v1        32187 186 +     80520 I
e mm10.chr7                  81367719 190 + 145441459 I

a score=300705.000000
s hg38.chr15_KI270850v1_alt    354210 20 +    430880 CAAGAGGCCTAGAACTTGCC
s panTro5.chr15              63507609 20 +  83230942 CAAGAGGCCTAGAACTTGCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464702 20 +  99763055 CAAGAGGCCTAGAACTTGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64886 20 -   1709092 CAAGAGGCCTAGAACTTGCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224325 20 - 121039945 CAAGAGGCCTAGAACTTGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905101 20 + 169600520 CAAGAGGCCTAGAACTTGTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431841 20 - 171882078 CAAGAGGCCTAGAACTTGTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42574 20 -   2311642 CAAGAGGCCTAGAACTTGTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40764 20 -   1987038 CAAGAGGCCTAGAACTTGTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121013 20 -  24206276 CAAGAGGCCTAGAACTTGTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36176 20 -   1397330 CAAGAGGCCTAGAACTTGTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59652 20 -   1784207 CAAGAGGCCTAGAACTTGTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262035 20 + 158406734 CAAGAGGCCTAGAACTTGCC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50492929 20 +  54856640 CAAGAGGCCTAGAACTTGCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       635911 20 -   2910086 CAAGAGGCCTAGAACTTGCC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664011 20 +  42888418 CAAGAGGCCTAGAACTTGCC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113287368 20 + 116334831 CAAGAAGCCTACAACTTGCC
i micMur3.chr9              I 199 C 0
s otoGar3.GL873530             649118 20 -  36342412 CAAGAGGCCTGGAACGTGAC
i otoGar3.GL873530          I 14 C 0
s canFam3.chr3               54425947 20 +  91889043 GAAAAGGCTTAGGATTTTCC
i canFam3.chr3              I 16 C 0
s dasNov3.JH570731            1821133 20 +   3943991 CAGGAGGTTTAGGATTTTCT
i dasNov3.JH570731          I 11 C 0
e proCoq1.NW_012142813v1        32187 186 +     80520 I
e mm10.chr7                  81367719 190 + 145441459 I

a score=276565.000000
s hg38.chr15_KI270850v1_alt    354230 16 +    430880 AGCTGGTTTGATATTT
s panTro5.chr15              63507629 16 +  83230942 AGCTGGTTTGATATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464722 16 +  99763055 AGCTGGTTTGATATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64906 16 -   1709092 AGCTGGTTTGATATTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224345 16 - 121039945 AGCTGGTTTGCTATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905121 16 + 169600520 AGCTGGTTTGATATTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431861 16 - 171882078 AGCTGGTTTGATATTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42594 16 -   2311642 AGCTGGTTTGATATTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40784 16 -   1987038 AGCTGGTTTGATATTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121033 16 -  24206276 AGCTGGTTTGATATTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36196 16 -   1397330 AGCTGGTTTGATATTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59672 16 -   1784207 AGCTGGTTTGATATTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262055 16 + 158406734 AGCTGGTTTGATATTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50492949 16 +  54856640 AGCTGGTTTGATATTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       635931 16 -   2910086 AGCTGGTTTGATATTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664031 16 +  42888418 AGCTGGTTTGATATTT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113287388 16 + 116334831 AGCTGGTTTGACATTT
i micMur3.chr9              C 0 C 0
s otoGar3.GL873530             649138 16 -  36342412 AGCTAGTCTGGTATCT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81367909 16 + 145441459 AGCTGGCTTGAGATCT
i mm10.chr7                 I 190 C 0
s canFam3.chr3               54425967 16 +  91889043 AGGTGTTTTGATATTT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1821153 16 +   3943991 GGCTGGTTTGATGTTT
i dasNov3.JH570731          C 0 I 174
e proCoq1.NW_012142813v1        32187 186 +     80520 I

a score=438398.000000
s hg38.chr15_KI270850v1_alt    354246 32 +    430880 CCTTCAACCCACAGAACAAGTGAATTTTGTGG
s panTro5.chr15              63507645 32 +  83230942 CCTTCAACCCACAGAACAAGTGAATTTTGTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464738 32 +  99763055 CCTTCAACCCACAGAACAAGTGAATTTTGTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64922 32 -   1709092 CCTTCAACCCACAGAACAAGTGAATTTTGTGG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224361 32 - 121039945 CCTTCAACCCACAGAACAAGTGAATTTTGTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905137 32 + 169600520 CCTTCAAGTCACAGAACAAGTGAATTTTGTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431877 32 - 171882078 CCTTCAAGTCACAGAACAAGTGAATTTTGTGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42610 32 -   2311642 CCTTCAAGTCACAGAACAAGTGAATTTTGTGG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40800 32 -   1987038 CCTTCAAGTCACAGAACAAGTGAATTTTGTGG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121049 32 -  24206276 CCTTCAAGTCACAGAACAAGTGAATTTTGTGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36212 32 -   1397330 CCTTCAAGTCACAGAACAAGTGAATTTTGTGG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59688 32 -   1784207 CCTTCAAGCCACAGAACAAGTGAATTTTGTGG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262071 32 + 158406734 CCTTCAACCCACAGACAAAGTGAATTTTGTCG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50492965 32 +  54856640 CCTTCAACCCACAGACCAAGTGAATTTTGTCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       635947 32 -   2910086 CCTTCAACCCACAGACCAAGTGAATTTTGTCG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664047 32 +  42888418 CCTTCAACCCACAGACCAAGTGAATTTTGTCG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113287404 32 + 116334831 CCTTCAACCCACAGAAGGAGCCAACTTTCTGG
i micMur3.chr9              C 0 C 0
s otoGar3.GL873530             649154 31 -  36342412 CCTTCAGCCCACAAAAGGAGCCAA-GTTCTGG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81367925 32 + 145441459 CTTTCAGCCCACAGAATGAGCCAAGTTTCTGG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54425983 32 +  91889043 CCTTCAACCTACAGAGGGAGCCAGGTTTCTGG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1821343 32 +   3943991 CCTTTAACCTGCAGAAGGTACCAAGTTTCTGG
i dasNov3.JH570731          I 174 C 0
e proCoq1.NW_012142813v1        32187 186 +     80520 I

a score=521488.000000
s hg38.chr15_KI270850v1_alt    354278 31 +    430880 AAACTGCCACCCATGGTC-AGATGCCCT-----AGAG
s panTro5.chr15              63507677 31 +  83230942 AAACTGCCACCCATGGTC-AGATGCCCT-----AGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464770 31 +  99763055 AAACTGCCACCCATGGTC-AGATGCCCT-----AGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64954 31 -   1709092 AAACTGCCACCCATGGTC-AGATGCCCT-----AGAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224393 31 - 121039945 AAACTGCCACCCATGGTC-AGATGCCCT-----AGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905169 31 + 169600520 AAACTGCCACCCATGGTC-AGATGCCCT-----AGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431909 31 - 171882078 AAACTGCCACCCATGGTC-AGATGCCCT-----AGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42642 31 -   2311642 AAACGGCCACCCATGGTC-AGATGCCCT-----AGAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40832 31 -   1987038 AAACTGCCACCCATGGTC-AGATGCCCT-----AGAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121081 31 -  24206276 AAACTGCCACCCATGGTC-AGACGCCCT-----AGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36244 31 -   1397330 AAACTGCCACCCATGGTC-AGATGCCCT-----AGAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59720 31 -   1784207 AAACTGCCACCCATGGTC-AGATGCCCT-----AGAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262103 32 + 158406734 AAACTGCCACTCATGGTCAAGATGCCCT-----AGAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50492997 32 +  54856640 AAACTGCCACCCATCGTCAAGATGCCCT-----AGAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       635979 32 -   2910086 AAACTGCCACCTATGGTCAAGATGCCCT-----AGAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664079 32 +  42888418 AAACTGCCACCCATGGTCAAGATGCCCT-----AGAG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113287436 31 + 116334831 AAACTGTCACCCACTGTC-AGATGCCCT-----AGAG
i micMur3.chr9              C 0 I 258
s proCoq1.NW_012142813v1        32373 31 +     80520 AAACTGTCACCCATTGTC-AGATGCCCT-----AGAG
i proCoq1.NW_012142813v1    I 186 I 249
s otoGar3.GL873530             649185 35 -  36342412 AAAATGTCACCAA-GGTC-TGACATCCTTTTTCACAG
i otoGar3.GL873530          C 0 I 2
s mm10.chr7                  81367957 31 + 145441459 AAACTGTGACCCACAGTC-AGATGCCCT-----CGAG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54426015 31 +  91889043 AAACTGTCACGTATGGTC-AGATGCCCT-----GGAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1821375 31 +   3943991 CGACTGTCACCCGTGGAC-AGAAGCCCT-----AAAA
i dasNov3.JH570731          C 0 C 0

a score=437304.000000
s hg38.chr15_KI270850v1_alt    354309 35 +    430880 TGACCTAATTGT-------------ACCTC-TATAGG-----GTCTGGCCAGGC
s panTro5.chr15              63507708 35 +  83230942 TGACCTAATTGT-------------ACCTC-TATAGG-----GTCTGGCCAGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464801 35 +  99763055 TGACCTAATTGT-------------ACCTC-TATAGG-----GTCTGGCCAGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        64985 35 -   1709092 TGACCTAATTGT-------------ACCTC-TATAGG-----GTCTGGCCAGGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224424 35 - 121039945 TGACCTGATTGT-------------ACCTC-TACAGG-----GTCTGGCCAGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905200 35 + 169600520 TGACCTGATTGT-------------ACCTC-TATAGG-----GTCTGGCCAGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431940 35 - 171882078 TGACCTGATTGT-------------ACCTC-TATAGG-----GTCTGGCCAGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42673 35 -   2311642 TGACCTGATTGT-------------ACCTC-TATAGG-----GTCTGGCCAGGC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40863 35 -   1987038 TGACCTGATTGT-------------ACCTC-TATAGG-----GTCTGGCCAGGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121112 35 -  24206276 TGACCTGATTGT-------------ACCCC-TACAGG-----GTCTGGCCAGGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36275 35 -   1397330 TGACCTGATTGT-------------ACCTC-TATAGG-----GTCTGGCCAGGC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59751 35 -   1784207 TGACCTGATTGT-------------ACCTC-TATAGG-----GTCTGGCCAGGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262135 35 + 158406734 TGACCTGACTGT-------------ACCTC-CACAGG-----GCCTGGCCAGGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493029 35 +  54856640 TGACCGAACTGT-------------ACCTC-CATAGG-----GCCTGGCCAGGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636011 35 -   2910086 TGACCTAACTGT-------------ACCTC-CATAGG-----GCCTGGCCAGGC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664111 35 +  42888418 TGACCTGACTGT-------------ACCTC-CATAGG-----GCCTGGCCAGGC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             649222 30 -  36342412 ----CTA--TCT-------------ACCTCGCCCAAG-----GCCTGGCCTCAC
i otoGar3.GL873530          I 2 C 0
s mm10.chr7                  81367988 33 + 145441459 TGACCTGACTGT-------------CCCTT-TACA-------GCCCAACCCGGC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54426046 48 +  91889043 TAACCTAACTATTCTGATATAGTCAACTCA-CACAGG-----GCCTGGCCAGGT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1821406 40 +   3943991 TGACCTAATTGT-------------CCCTC-TATAGGACAGTATCTCACAGGGC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113287467 258 + 116334831 I
e proCoq1.NW_012142813v1        32404 249 +     80520 I

a score=8090.000000
s hg38.chr15_KI270850v1_alt    354344 1 +    430880 -A
s panTro5.chr15              63507743 1 +  83230942 -A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464836 1 +  99763055 -A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        65020 1 -   1709092 -A
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224459 1 - 121039945 -A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905235 1 + 169600520 -A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431975 1 - 171882078 -A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42708 1 -   2311642 -A
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40898 1 -   1987038 -A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121147 1 -  24206276 -A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36310 1 -   1397330 -A
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59786 1 -   1784207 -A
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262170 1 + 158406734 -A
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493064 1 +  54856640 -A
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636046 1 -   2910086 -A
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664146 1 +  42888418 -A
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        32653 1 +     80520 -A
i proCoq1.NW_012142813v1    I 249 C 0
s otoGar3.GL873530             649252 1 -  36342412 -A
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81368021 1 + 145441459 -A
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54426094 1 +  91889043 -A
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1821446 1 +   3943991 C-
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113287467 258 + 116334831 I

a score=72300.000000
s hg38.chr15_KI270850v1_alt    354345 6 +    430880 GTTCTC
s panTro5.chr15              63507744 6 +  83230942 GTTCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464837 6 +  99763055 GTTCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        65021 6 -   1709092 GTTCTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224460 6 - 121039945 GTTCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905236 6 + 169600520 GTTATC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431976 6 - 171882078 GTTATC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42709 6 -   2311642 GTTATC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40899 6 -   1987038 GTTATC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121148 6 -  24206276 GTTATC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36311 6 -   1397330 GTTATC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59787 6 -   1784207 GTTCTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262171 6 + 158406734 GTTTTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493065 6 +  54856640 GTTTTC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636047 6 -   2910086 GTTTTC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664147 6 +  42888418 GTTTTC
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        32654 6 +     80520 GTTCTC
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             649253 6 -  36342412 GTTCTT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54426095 6 +  91889043 GTTCTT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1821447 5 +   3943991 -TGGTC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113287467 258 + 116334831 I
e mm10.chr7                  81368022 0 + 145441459 C

a score=439749.000000
s hg38.chr15_KI270850v1_alt    354351 38 +    430880 TGAGTGTCTACAGATCAAAGGAAGGAAAGCAGCAAAGA
s panTro5.chr15              63507750 38 +  83230942 TGAGTGTCTACAGATCAAAGGAAGGAAAGCAGCAAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464843 38 +  99763055 TGAGTGTCTACAGATCAAAGGAAGGAAAGCAGCAAAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        65027 38 -   1709092 TGAGTGTCTACAGATCAAAGGAAGGAAAGCAGCAAAGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224466 38 - 121039945 TGAGTGTCTACAGATCAAAGGAAGGAAAGCAGCAAAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905242 30 + 169600520 TGAGTATCTACA--------GAAGGAAAGCAGCAAAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108431982 30 - 171882078 TGAGTATCTACA--------GAAGGAAAGCAGCAAAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42715 30 -   2311642 TGAGTATCTACA--------GAAGGAAAGCAGCAAAGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40905 30 -   1987038 TGAGTATCTACA--------GAAGGAAAGCAGCAAAGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121154 30 -  24206276 TGAGTATCTACA--------GAAGGAAAGCAGCAAAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36317 30 -   1397330 TGAGTATCTACA--------GAAGGAAAGCAGCAAAGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59793 30 -   1784207 TGAGTATCTACA--------GAAGGAAAGCAGCAAAGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262177 38 + 158406734 TGAGTATCTACAGATCAAAGGAAGGAAAACAGCAATTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493071 38 +  54856640 TGAGTATCTACAGATCAAAGGAAGGAAAGAAGCAATTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636053 38 -   2910086 TGAGTATCTGCAGATCAAAGGAAGGAAAGAAGCAATTA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664153 38 +  42888418 TGAGTATATACAGATCAAAGGAAGGAAAGCAGCAATTA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113287725 38 + 116334831 TGAGTATCTACAGATCAAAGGAAGGAAAGCAGTAGAGA
i micMur3.chr9              I 258 C 0
s proCoq1.NW_012142813v1        32660 38 +     80520 TGAGTATCTATAGATCAAAGGAAGGAAAGCAGTAGAGA
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             649259 38 -  36342412 TGAGTGTCTGCAGATCAAAGAAAGGAAAGCAGCAAAGA
i otoGar3.GL873530          C 0 I 28
s canFam3.chr3               54426101 23 +  91889043 TGAATATCTATAGATCACAGGAA---------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1821452 34 +   3943991 TGAG----AACGGATCAAAGGAGAGAAAGTGGCAGAGA
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81368022  0 + 145441459 C

a score=28809.000000
s hg38.chr15_KI270850v1_alt    354389 2 +    430880 CA
s panTro5.chr15              63507788 2 +  83230942 CA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464881 2 +  99763055 CA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        65065 2 -   1709092 CA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224504 2 - 121039945 CA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905272 2 + 169600520 CA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108432012 2 - 171882078 CA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42745 2 -   2311642 CA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40935 2 -   1987038 CA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121184 2 -  24206276 CA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36347 2 -   1397330 CA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59823 2 -   1784207 CA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262215 2 + 158406734 CA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493109 2 +  54856640 CA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636091 2 -   2910086 CA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664191 2 +  42888418 CA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113287763 2 + 116334831 CA
i micMur3.chr9              C 0 I 18
s proCoq1.NW_012142813v1        32698 2 +     80520 CA
i proCoq1.NW_012142813v1    C 0 I 17
s dasNov3.JH570731            1821486 2 +   3943991 CT
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81368022 0 + 145441459 C
e canFam3.chr3               54426124 0 +  91889043 C
e otoGar3.GL873530             649297 28 -  36342412 I

a score=125183.000000
s hg38.chr15_KI270850v1_alt    354391 43 +    430880 ATGGAAAGAAAGCAGCAAAGCAGCAAAGACAAAGGGAAGT-GGG
s panTro5.chr15              63507790 43 +  83230942 ATGGAAAGAAAGCAGCAAAGCAGCAAAGACAAAGGGAAGT-GGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464883 43 +  99763055 ATGGAAAGAAAGCAGCAAAGCAGCAAAGACAAAGGGAAGT-GGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        65067 43 -   1709092 ATGGAAAGAAAGCAGCAAAGCAGCAAAGACAAAGGGAAGT-GGG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224506 43 - 121039945 ATGGAAAGAAAGCAGCAAAGCAGCAAAGACAAAGGGAAGT-GGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905274 35 + 169600520 ATGGAAGG--------AAAGCAGTAAAGACAAAGCGAAGT-GGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108432014 35 - 171882078 ATGGAAGG--------AAAGCAGTAAAGACAAAGCGAAGT-GGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42747 35 -   2311642 ATGGAAGG--------AAAGCAGTAAAGACAAAGCGAAGT-GGG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40937 35 -   1987038 ATGGAAGG--------AAAGCAGTAAAGACAAAGCGAAGT-GGG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121186 35 -  24206276 ATGGAAGG--------AAAGCAGTAAAGACAAAGCGAAGT-GGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36349 35 -   1397330 ATGGAAGG--------AAAGCAGTAAAGACAAAGCGAAGT-GGG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59825 35 -   1784207 ATGGAAGG--------AAAAGAGCAAAGACAAAGCGAAGT-GGG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262217 21 + 158406734 TTGGGTTC----------------------CTAGGGAAGT-GGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493111 22 +  54856640 CTGGGTTC----------------------TTAGGGGAGTAGGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636093 21 -   2910086 CTGGGTTC----------------------CTAGGAGAGT-GGG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664193 21 +  42888418 TTGGGTTC----------------------CTAGGGAAGT-GGG
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54426124 17 +  91889043 ------------------------AAGTTTCTAGGGAAGA-T--
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1821488 19 +   3943991 ATGGGCTC----------------------CTGGAGAAGG-T--
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113287765 18 + 116334831 I
e proCoq1.NW_012142813v1        32700 17 +     80520 I
e mm10.chr7                  81368022  0 + 145441459 C
e otoGar3.GL873530             649297 28 -  36342412 I

a score=17100.000000
s hg38.chr15_KI270850v1_alt    354434 1 +    430880 G
s panTro5.chr15              63507833 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464926 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        65110 1 -   1709092 G
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224549 1 - 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905309 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108432049 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42782 1 -   2311642 G
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40972 1 -   1987038 G
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121221 1 -  24206276 G
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36384 1 -   1397330 G
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59860 1 -   1784207 G
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262238 1 + 158406734 G
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493133 1 +  54856640 G
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636114 1 -   2910086 G
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664214 1 +  42888418 G
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        32717 1 +     80520 G
i proCoq1.NW_012142813v1    I 17 C 0
s canFam3.chr3               54426141 1 +  91889043 G
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1821507 1 +   3943991 G
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113287765 18 + 116334831 I
e mm10.chr7                  81368022 0 + 145441459 C
e otoGar3.GL873530             649297 28 -  36342412 I

a score=35511.000000
s hg38.chr15_KI270850v1_alt    354435 2 +    430880 GG
s panTro5.chr15              63507834 2 +  83230942 AG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464927 2 +  99763055 GG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        65111 2 -   1709092 GG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224550 2 - 121039945 GG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905310 2 + 169600520 GG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108432050 2 - 171882078 GG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42783 2 -   2311642 GG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40973 2 -   1987038 GG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121222 2 -  24206276 GG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36385 2 -   1397330 GG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59861 2 -   1784207 GG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262239 2 + 158406734 GG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493134 2 +  54856640 GG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636115 2 -   2910086 GG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664215 2 +  42888418 GG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113287783 2 + 116334831 GG
i micMur3.chr9              I 18 C 0
s proCoq1.NW_012142813v1        32718 2 +     80520 GG
i proCoq1.NW_012142813v1    C 0 C 0
s canFam3.chr3               54426142 2 +  91889043 GG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1821508 2 +   3943991 GG
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81368022 0 + 145441459 C
e otoGar3.GL873530             649297 28 -  36342412 I

a score=2019589.000000
s hg38.chr15_KI270850v1_alt    354437 144 +    430880 ACCTCATTTCAAGAAA-GAAAACCTGTCTTGCTCCCAGCTCA-----TGAGACCATACCTGCC-------CTA-TGTAAGGTTGCTGAGTACGCAGCACCGATTTCCACCAGCTGGGAAT------CAGAAGGAAAGGAGCAAAATAGCTAGCGTTAGACTGTT
s panTro5.chr15              63507836 144 +  83230942 ACCTCATTTCAAGAAA-GAAAACCTGTCTTGCTCCCAGCTCA-----TGAGACCATACCTGCC-------CTA-TGTAAGGTTGCTGAGTACGCAGCACCGATTTCCACCAGCTGGGAAT------CAGAAGGAAAGGAGCAAAATAGCTAGCGTTAGACTGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80464929 144 +  99763055 ACCTCATTTCAAGAAA-GAAAACCTGTCTTGCTCCCAGCTCA-----TGAGACCATACCTGCC-------CTA-TGTAAGGTTGCTGAGTACGCAGCACCGATTTCCACCAGCTGGGAAT------CAGAAGGAAAGGAGCAAAATAGCTAGCGTTAGACTGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        65113 144 -   1709092 ACCTCATTTCAAGAAA-GAAAACCTGTCTTGCTCCCAGCTCA-----TGAGACCATACCTGCC-------CTA-TGTAAGGTTGCTGAGTACGCAGCACCGATTTCCACCAGCTGGGAAT------TAGAAGGAAAGGAGCAAAATAGCTAGCGTTAGACTGTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224552 144 - 121039945 ACCTCATTTCAATAAA-GAAAGCCTGTCTTGCTCCCAGCTCA-----TGAGACCATACTTGCC-------CTA-TGTAGGGTTGCTGAGTACACAGCACCGATTTCCACCAGCTGGGAAT------CAGAAGGAAAGGAGCAAAATAGCTAGCGTTAGACTGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905312 143 + 169600520 ACCTCATTTCAAGAAA-GAAAACCTGTCTTGCTCCCAGCTCA-----TGAGACCATACTTGCC-------CTA-TGTAGGGCTGCTGAGTAAGCAGCACCGA-TTCCACCAGCTGGGAGT------CAGAAGGAAAGGAGCAGAATAGCTAGCATTAGACTGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108432052 143 - 171882078 ACCTCATTTCAAGAAA-GAAAACCTGTCTTGCTCCCAGCTCA-----TGAGACCATACTTGCC-------CTA-TGTAGGGCTGCTGAGTAAGCAGCACCGA-TTCCACCAGCTGGGAGT------CAGAAGGAAAGGAGCAGAATAGCTAGCATTAGACTGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42785 143 -   2311642 ACCTCATTTCAAGAAA-GAAAACCTGTCTTGCTCCCAGCTCA-----TGAGACCATACTTGCC-------CTA-TGTAGGGCTGCTGAGTAAGCAGCACCGA-TTCCACCAGCTGGGAGT------CAGAAGGAAAGGAGCAGAATAGCTAGCATTAGACTGTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        40975 143 -   1987038 ACCTCATTTCAAGAAA-GAAAACCTGTCTTGCTCCCAGCTCA-----TGAGACCATACTTGCC-------CTA-CGTAGGGCTGCTGAGTAAGCAGCACCGA-TTCCGCCAGCTGGGAGT------CAGAAGGAAAGGAGCAAAATAGCTAGCATTAGACTGTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121224 143 -  24206276 ACCTCATTTCAAGAAA-GAAAACCTGTCTTGCTCCCAGTTCA-----TGAGACCATACTTGCC-------CTA-TGTAGGGCTGCTGAGTAAGCAGCACCGA-TTCCACCAGCTGGGAGT------CAGAAGGAAAGGAGCAAAATAGCTAGCATTAGACTGTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36387 143 -   1397330 ACCTCATTTCAAGAAA-GAAAACCTGTCTTGCTCCCAGCTCA-----TGAGACCATACTTGCC-------CTA-CGTAGGGCTGCTGAGTAAGCAGCACCGA-TTCCGCCAGCTGGGAGT------CAGAAGGAAAGGAGCAAAATAGCTAGCATTAGACTGTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        59863 143 -   1784207 ACCTCATTTCAAGAAA-GAAAACCTGTCTTGCTCCCAGCTCA-----TGAAACCATACTTGCC-------CTA-TGTAGGGTTTCTGAGTAAGCAGCACCGA-TTCCACCAGCTGGGAGT------CAGAAGGAAAGGAGCAAAATAGCTAGTGTTAGACTGTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262241 143 + 158406734 ACTTCATTTCAAGAAA-GGAAGCCTGTCTTG-TTCCAGCTCA-----TGAGACCACACTTGCC-------GTA-TGTAGGGTTGCTGAGTAAGCAGCACCGATTTCTACCAGCTGGGAAT------CAGGAGGAAAGAAACAAAACAGCTAGCATTAGACTGTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493136 144 +  54856640 AGTTCATTTCAAGAAA-GGAAGCCTGTCTTGCTCCCAGCTCA-----CGAGACCATACTTGCC-------ATA-TGTAGGGTTGCTGAGTAAGCAGCACCGATTTCCACCAGCTGGGAAT------CAGGAGGAAAGGAACAAAACAGCTAGCATTGGACTGTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636117 144 -   2910086 AGTTCATTTCAAAAAA-GGAAGCCTGTCTTGCTCCCAGCTCA-----TGAGACCATACTTGCC-------ATA-TGTAGGGTTGCTGAGTAAGCAGCACTGATTTCCACCAGCTGGGGAT------CAGGAGGAAAGGAACAAAACAGCTAGCGTTGGACTGTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664217 144 +  42888418 ACTTCATTTCAAGAAA-GGAAGCCTGTCTTGCTCCCAGCTCA-----TGAGACCATACCTGCC-------CTA-TGTAGGGTTGCTGAGTAAGCAGCACCGATTTCCACCAGCTGGGAAT------CAGGAGGAAAGGAACAAAACAGCTAGCGTTAGACTGTT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113287785 145 + 116334831 ACCTCATTTCAAGAGA-GAA--CCTGTCTTGCTCCCAGCTCAGCTC---AGACCATCCTTG-C----GCCCTG-TGGATGGTTGCTCAGTGAGCAGCACTGATTTTCACCAACTGGGAAT------CAGAGAGAAAGGAGTAAAG-AACTAGTGTTAGACTGTT
i micMur3.chr9              C 0 I 46
s proCoq1.NW_012142813v1        32720 149 +     80520 ACCTCATTTCAAAAGA-GAA--CCCATCTTGCTCCCAGCTCAGCTCAGGAGACCATACTTGCC----GCCCTA-TGTATGGTTACTCAGTGAGCAGCACTGATTTCCACCAGCTGGGAAT------CAGGAGGAAAGAAGCAAAG-AGCTAGTGTCAGACTGTT
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             649325 158 -  36342412 ACTGCATTTAAGAAAG-GGAATTTTGTCTTGCTTCCAGCTCAGCTACTGAGACCACACTTGCCCTGAGTGCAA-AGTGTGGGTGTGCAGTGAGCAGCACTGA--CCCCCCAGCTAGGAATGGGAAGCAGGAGGAGAGGAACCCAA-AGCTAGTATCTTA-TGTC
i otoGar3.GL873530          I 28 I 4
s canFam3.chr3               54426144 151 +  91889043 ACCTCATCTCAAGAGATGGAAACCTGTCTTGTTCCTGGTTCAGGTCAGGAGACCATACTTCCC-------CTGCTGTAAGGGTGCTGGGTGGCCAGCACAGATCTCCACCAGCTGAGAAT------CGGGAGGGAAGGAGCCAAACAGCTAGCAACTGATGGTT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1821510 137 +   3943991 ATCTAGTTTTAGGAAA-TGGAACCTGTCTTGCTCCCAGCTCAGCTCATAAGACCACATGCTCC-------CTA-TGTACAGTTGCTGAGTGGGCAGCACCAATTCCCAG-----------------CAGGAGGGGAGGAA-GCAATAGTTAACAATGGCTCATT
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81368022   0 + 145441459 C

a score=54511.000000
s hg38.chr15_KI270850v1_alt    354581 3 +    430880 CCC
s panTro5.chr15              63507980 3 +  83230942 CCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80465073 3 +  99763055 CCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        65257 3 -   1709092 CCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224696 3 - 121039945 CCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905455 3 + 169600520 CCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108432195 3 - 171882078 CCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42928 3 -   2311642 CCC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        41118 3 -   1987038 CCC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121367 3 -  24206276 CCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36530 3 -   1397330 CCC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        60006 3 -   1784207 CCC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262384 3 + 158406734 CCC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493280 3 +  54856640 CCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636261 3 -   2910086 CCC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664361 3 +  42888418 CCC
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        32869 3 +     80520 CCC
i proCoq1.NW_012142813v1    C 0 I 32
s otoGar3.GL873530             649487 3 -  36342412 CCC
i otoGar3.GL873530          I 4 I 2
s canFam3.chr3               54426295 3 +  91889043 TCC
i canFam3.chr3              C 0 I 3
s dasNov3.JH570731            1821647 3 +   3943991 CCC
i dasNov3.JH570731          C 0 I 10
e micMur3.chr9              113287930 46 + 116334831 I
e mm10.chr7                  81368022 0 + 145441459 C

a score=285738.000000
s hg38.chr15_KI270850v1_alt    354584 30 +    430880 ------ATTTATAT-TCAAAGCCACGAGCATACCTAA
s panTro5.chr15              63507983 30 +  83230942 ------ATTTATAT-TCAAAGCCACGAGCATACCTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80465076 30 +  99763055 ------ATTTATAT-TCAAAGCCACGAGCATACCTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        65260 30 -   1709092 ------ATTTATAT-TCAAAGCCACGAGCATACCTAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224699 30 - 121039945 ------ATTTATAT-TCAAAGCCATGAGCATACCTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905458 30 + 169600520 ------ATTTATAT-TCAAAGCCACGAGCATACCTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108432198 30 - 171882078 ------ATTTATAT-TCAAAGCCACGAGCATACCTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42931 30 -   2311642 ------ATTTATAT-TCAAAGCCACGAGCATACCTAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        41121 30 -   1987038 ------ATTTATAT-TCAAAGCCACGAGCATACCTAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121370 30 -  24206276 ------ATTTATAT-TCAAAGCCACGAGCATACCTAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36533 30 -   1397330 ------ATTTATAT-TCAAAGCCACGAGCATACCTAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        60009 30 -   1784207 ------ATTTATAT-TCAAAGCCACGAGCATACCTAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262387 29 + 158406734 ------TTTTAGAT-TCAAAGCCACAAG-ATACCTAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493283 30 +  54856640 ------TTTTACAT-TCAAAGCCATGAGTATACCTAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636264 30 -   2910086 ------TTTTACAT-TCAAAGCCACAAGTATACCTAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664364 30 +  42888418 ------TTTTACAT-TCAAAGCCACGAGTATACCTAA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             649492 30 -  36342412 ------CTTCCTGTCTCACAGCAGGGAGGACACCCA-
i otoGar3.GL873530          I 2 C 0
s canFam3.chr3               54426301 29 +  91889043 ------CTCCTAAC-TTGAAGTAGGAGGTCTATCTA-
i canFam3.chr3              I 3 C 0
s dasNov3.JH570731            1821660 30 +   3943991 CTCTTCTTCCTAAC-TCAAAACAGTAAGTAA------
i dasNov3.JH570731          I 10 C 0
e micMur3.chr9              113287930 46 + 116334831 I
e proCoq1.NW_012142813v1        32872 32 +     80520 I
e mm10.chr7                  81368022  0 + 145441459 C

a score=190948.000000
s hg38.chr15_KI270850v1_alt    354614 13 +    430880 CTGGAAAGGCATT
s panTro5.chr15              63508013 13 +  83230942 CTGGAAAGGCATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80465106 13 +  99763055 CTGGAAAGGCATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        65290 13 -   1709092 CTGGAAAGGCATT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224729 13 - 121039945 CTGGAAAGGCATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905488 13 + 169600520 CTGGAAAGGCATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108432228 13 - 171882078 CTGGAAAGGCATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42961 13 -   2311642 CTGGAAAGGCATT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        41151 13 -   1987038 CTGGAAACGCATT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121400 13 -  24206276 CTGGAAAGGCATT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36563 13 -   1397330 CTGGAAACGCATT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        60039 13 -   1784207 CTGGAAAGGCATT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262416 13 + 158406734 CTGGAAAGGTACT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493313 13 +  54856640 CTGGAAAGGTACT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636294 13 -   2910086 CTGGAAAGGTACT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664394 13 +  42888418 CTGGAAAGGTACT
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        32904 13 +     80520 CTGGAAAGGCACT
i proCoq1.NW_012142813v1    I 32 I 2
s otoGar3.GL873530             649522 13 -  36342412 CTGGGAAGGCACT
i otoGar3.GL873530          C 0 I 2
s canFam3.chr3               54426330 13 +  91889043 CTGGAAAAGCACA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1821690 13 +   3943991 ATGGAAAAGTACT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113287930 46 + 116334831 I
e mm10.chr7                  81368022  0 + 145441459 C

a score=886740.000000
s hg38.chr15_KI270850v1_alt    354627 64 +    430880 CTCTTTAAGCCACACAAACTAAAATCCAGTGGAAATGACAGGTCCCTTATAATGCAGGCCAGTG
s panTro5.chr15              63508026 64 +  83230942 CTCTTTAAGCCACACAAACTAAAATCCAGTGGAAATGACAGGTCCCTTATAATGCAGGCCAGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80465119 64 +  99763055 CTCTTTAAGCCACACAAACTAAAATCCAGTGGAAATGACAGGTCCCTTATAATGCAGGCCAGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        65303 64 -   1709092 CTCTTTAAGCCACACAAACTAAAATCCAGTGGAAATGACAGGTCCCTTATAATGCAGGCCAGTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224742 64 - 121039945 CTCTTTAATCCACACAAACTAAAATCCAGTGGAAATGACAGGTCCCTTATAATGCAGGCCAGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905501 62 + 169600520 CTCTTTAAGCCACACAAAC--AAATCCAGTGGAAATGACAGGTCCCTTACAAAGCAGGCCAGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108432241 62 - 171882078 CTCTTTAAGCCACACAAAC--AAATCCAGTGGAAATGACAGGTCCCTTACAAAGCAGGCCAGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        42974 62 -   2311642 CTCTTTAAGCCACACAAAC--AAATCCAGTGGAAATGACAGGTCCCTTACAAAGCAGGCCAGTG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        41164 62 -   1987038 CTCTTTAAGCCACACAAAC--AAATCCAGTGGAAATGACAGGTCCCTTATAAAGCAGGCCAGTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121413 62 -  24206276 CTCTTTAAGCCACACAAAC--AAATCCAGTGGAAATGACAGGTCCCTTATAAAGCAGGCCAGTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36576 62 -   1397330 CTCTTTAAGCCACACAAAC--AAATCCAGTGGAAATGACAGGTCCCTTATAAAGCAGGCCAGTG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        60052 62 -   1784207 CTCTTTAAGCCACACAAAC--AAATCCAGTGGAAATGACAGGTCCCTTATAAAGCAGGCCAGTG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262429 64 + 158406734 CTCTTTAAGCCACAGAAACTAAAATCCAGTGGAAATAACAGGTCCCTTATAATGCAAGTCAGTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493326 64 +  54856640 CTCTTTAAGCCACAGAAACTAAAATCCAGTGGAAATGACAGGTCCCTTATAATGCAAGTCAGTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636307 64 -   2910086 CTCTTTAAGCCACAGAAACTGAAATCCAGTGGAAATGACAGGTCCCTTGTAATGCAAGTCAGTG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664407 64 +  42888418 CTCTTTAAGCCACAGAAACTAAAATCCAGTGGAAATGACAGGTCCCTTATAATGCAAGTCAGTG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113287976 64 + 116334831 CTCTCTAAGCCACACAACCGAAAATCAAGTGGAAGGGATAGGTCCCTTACACTGCAGGCCAGTG
i micMur3.chr9              I 46 I 125
s proCoq1.NW_012142813v1        32919 64 +     80520 CTCTTTAAGCCACACAACCTAAAATCAAGTGGAAGTGACAGATCCCTTACACTGCAGGCCAGTG
i proCoq1.NW_012142813v1    I 2 I 90
s otoGar3.GL873530             649537 43 -  36342412 CTCTTTAAGCCATAGAACCTAAAGTCAAGTGGAAGTGACAGAT---------------------
i otoGar3.GL873530          I 2 C 0
s canFam3.chr3               54426343 61 +  91889043 --CTCTAAGCTACATAACCT-AAACCCAATGTAAGCAATAGGTCACTTATACTGCAGGCCAGTA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1821703 47 +   3943991 CTCTCTAA-CCAAACAACCTGAAATC------------CAGGTCCCTTATGCTACAGGCC----
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81368022  0 + 145441459 C

a score=1077559.000000
s hg38.chr15_KI270850v1_alt    354691  99 +    430880 TCTCATCTCAAAGTCCACTCCCCATCATGGGGCACACAACTTCA-TAATTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGAGGGGGAGGGGTGGT
s panTro5.chr15              63508090  99 +  83230942 TCTCATCTCAAAGTCCACTCCCCATCATGGGGCACACAACTTCA-TAATTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGAGAGGGAGGGGTGGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80465183  99 +  99763055 TCTCATCTCAAAGTCCACTCCCCATCATGGGGCACACAACTTCA-TAATTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGAGAGGGAGGGGTGGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        65367  99 -   1709092 TCTCATCTCAAAGTCCACTCCCCATCATGGGGCACACAACTTCA-TAATTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGAGGGGGAGGGGTGGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224806  99 - 121039945 TCTCATCTCAAAGTCCACTCCCCATCATGGGGCACACAACTTCA-TAATTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGAGGGGGAGAGGTAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905563  96 + 169600520 TCTCATCTCAAAGTCCACTCCCCATCCTGGGGCAC---ACTTCG-TAAGTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGACGAGGAGGGGTGGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108432303  96 - 171882078 TCTCATCTCAAAGTCCACTCCCCATCCTGGGGCAC---ACTTCG-TAAGTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGACGAGGAGGGGTGGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        43036  96 -   2311642 TCTCATCTCAAAGTCCACTCCCCATCCTGGGGCAC---ACTTCG-TAAGTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGACGAGGAGGGGTGGT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        41226  96 -   1987038 TCTCATCTCAAAGTCCACTCCCCATCCTGGGGCAC---ACTTCG-TAAGTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGACGAGGAGGGTTGGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121475  93 -  24206276 TCTCATCTCAAAGTCCACTCCCCATCCTGGGGCAC---ACTTCG-TAAGTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGACGAGGAGG---GGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36638  96 -   1397330 TCTCATCTCAAAGTCCACTCCCCATCCTGGGGCAC---ACTTCG-TAAGTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGACGAGGAGGGTTGGT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        60114  96 -   1784207 TCTCATCTCAAAGTCCACTCCCCATCCTGGGGCAC---ACTTCC-TAAGTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGACGAGGAGGGGTGGT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262493  99 + 158406734 TCTCATCTCAAAGTCCACTCTCCATCATGGGATACACAACTTCC-TAAGTCCAAATGTCAAATATT---AACCTAGATGGATTAGAGGAAGGGGAGGGGTGGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493390  99 +  54856640 TCTCATCTCAAAATCCACTCTCCATCATGGGACACACAACTTCC-TAAGTCCAAATGTCAAGTATT---AACCTCGATGGATTAGAGGAATGGGAGGGGTGGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636371  99 -   2910086 TCTCATCTCAAAGTCTACTCTCCATCATGGGACACACATCTTCA-TAAGTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGAAGGGGAGGCGTGGT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664471  99 +  42888418 TCTCATCTCAAAGTCCACTCTCCATCATGGGACACACAACTTCG-TAAGTCCAAATGTCAAGTATT---AACCTAGATGGATTAGAGGAAGGGGAGGGGTGGT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             649580  80 -  36342412 ------------GTCC---CCCCAT----AGGTACAGAGCTTCATTAAGGCCAGATATCAAGTATT---GACCTAGATGGCTTAT-GGAAGGGTGGGAGTGGT
i otoGar3.GL873530          C 0 I 5
s canFam3.chr3               54426404 103 +  91889043 ACCTATCTCGAAGTCCACTCCCCATCACAGGGCACAGAGCTTCACCAAGGCCAGGTGTCAAGTATTAACAACCCAGACGGCTTAGGGGGTGGGGAGTGTGGGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1821750  70 +   3943991 ------------------TCTCTACCACAGGACAG--AGCGTCAGGAAGATTAGATGCCAGGCATT---AATCTAGATGGCTTGAGGGGTGGG----------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113288040 125 + 116334831 I
e proCoq1.NW_012142813v1        32983  90 +     80520 I
e mm10.chr7                  81368022   0 + 145441459 C

a score=364078.000000
s hg38.chr15_KI270850v1_alt    354790 32 +    430880 GAGAAGTCCTAGAGTCAATCTCCAATAACGGC
s panTro5.chr15              63508189 32 +  83230942 GAGAAGTCCTAGAGTCAATCTCCAATAACGGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80465282 32 +  99763055 GAGAAGTCCTAGAGTCAATCTCCAATAACGGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        65466 32 -   1709092 GAGAAGTCCTAGAGTCAATCTCCAATAATGGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224905 32 - 121039945 GAGAAGTTCTAGAGTCAATCTCCAATAATGGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905659 32 + 169600520 AAGACATCCTAGAGTCAACCTCCAATAATGGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108432399 32 - 171882078 AAGATGTCCTAGAGTCAACCTCCAATAATGGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        43132 32 -   2311642 AAGACGTCCTAGAGTCAACCTCCAATAATGGC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        41322 32 -   1987038 AAGACGTCCTAGAGTCAACCTCCAATAATGGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121568 32 -  24206276 AAGACGTCCTAGAGTCAACCTCCAATAACGGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36734 32 -   1397330 AAGACGTCCTAGAGTCAACCTCCAATAATGGC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        60210 32 -   1784207 AAGATGTCCTAGAGTCAACCTCCAATAATGGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262592 32 + 158406734 GAGAAGTCCTAGAGTCAACCCCCAATAATGGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493489 32 +  54856640 GAGAAGTCCTAGAGTCAACCCCCAATAATGGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636470 32 -   2910086 GAGAAGTCCTAGAGTCAACCCCCAATAATGGC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664570 32 +  42888418 GAGAAGTCCTAGAGTCAACCCTCAATAATGGC
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        33073 32 +     80520 GAGAAGTCTCATAGTCAACCTTCAATGACGCC
i proCoq1.NW_012142813v1    I 90 C 0
s otoGar3.GL873530             649665 32 -  36342412 GAGAAGTCCTACAGTCAACCTTCAGTAACAGG
i otoGar3.GL873530          I 5 C 0
s canFam3.chr3               54426507 26 +  91889043 GAGAAGTCC-ATAGGCA--CCCCAGGAGC---
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1821820  9 +   3943991 ---------TTGAGTCAG--------------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113288040 125 + 116334831 I
e mm10.chr7                  81368022  0 + 145441459 C

a score=460712.000000
s hg38.chr15_KI270850v1_alt    354822 29 +    430880 CAAGGCCCTGACCTCTTTGCTCTGTTCTT-
s panTro5.chr15              63508221 29 +  83230942 CAAGGCCCTGACCTCTTTGCTCTGTTCTT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80465314 29 +  99763055 CAAGGCCCTGACCTCTTTGCTCTGTTCTT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        65498 29 -   1709092 CAAGGCCTTGACCTCTTTGCTCTGTTCTT-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224937 29 - 121039945 CAAGGCCCTGACCTCTTTGCTCTGTTCTC-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905691 29 + 169600520 CAAGACCCTGACCTCTTTGCTCTGTTCTC-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108432431 29 - 171882078 CAAGACCCTGACCTCTTTGCTCTGTTCTC-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        43164 29 -   2311642 CAAGACCCTGACCTCTTTGCTCTGTTCTC-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        41354 29 -   1987038 CAAGACCCTGACCTCTTTGCTCTGTTCTC-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121600 29 -  24206276 CAAGACCCTGACCTCTTTGCTCTGTTCTC-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36766 29 -   1397330 CAAGACCCTGACCTCTTTGCTCTGTTCTC-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        60242 29 -   1784207 CAAGACCCTGATCTCTTTGCTCTGTTCTC-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262624 29 + 158406734 CAAGGCCCTGACCTCTTTGCTCCGTTCTC-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493521 29 +  54856640 CAAGGCCCTGACCTCTTTGCTCTGTTCTC-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636502 29 -   2910086 CAAGGCCCTGACCTCTTTGCTCTGTTCTC-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664602 29 +  42888418 CAAGGCCCTGACCTCTTTGCTCTGTTCTC-
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113288165 29 + 116334831 CAAGGCCCTGACCTCTTTGCTCTGTTCTT-
i micMur3.chr9              I 125 I 113
s proCoq1.NW_012142813v1        33105 29 +     80520 AAAGGCCCTGACCGCTTTGCTCTATTCTT-
i proCoq1.NW_012142813v1    C 0 I 101
s otoGar3.GL873530             649697 29 -  36342412 CAAGGCCCTGACCTCTTTGCTCTGCGCCT-
i otoGar3.GL873530          C 0 I 1
s canFam3.chr3               54426533 26 +  91889043 -CAAGCCCTGATCTCTCTGCTCTATTC---
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1821829 23 +   3943991 -------CTAGCCTCTTAGCTCTGCTTCTG
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81368022  0 + 145441459 C

a score=1272444.000000
s hg38.chr15_KI270850v1_alt    354851 105 +    430880 TCCTGGCCTCCAGAACACAAGGGATCATGGAAAGTCTGAGG-TTTACCAAGTGCCTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATTCCTATCTTCTAAAAATGGG----
s panTro5.chr15              63508250 105 +  83230942 TCCTGGCCTCCAGAACACAAGGGATCATGGAAAGTCTGAGG-TTTACCAAGTGCCTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATTCCTATCTTCTAAAAATGGG----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80465343 105 +  99763055 TCCTGGCCTCCAGAACACAAGGGATCATGGAAAGTCTGAGG-TTTACCAAGTGCCTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATTCCTATCTTCTAAAAATGGG----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        65527 105 -   1709092 TCCTGGCCTCCAGAACACAAGGGATCATGGAAAGTCTGAGG-TTTACCAAGTGCCTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATTCCTATCTTCTAAAAATGGG----
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17224966 105 - 121039945 TCCTGGCCTCCAGAACACAGGAGATCATGGAAAGTCTGAGG-TTTACCAAGTGCCTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATTCCTATCTTCTAAAAATGGG----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905720 106 + 169600520 TCCTGGCCTCCAGAACACAAGGGATCATGGAAAGTCTAAGATTTTATCAAGTGCCTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATCCCTATCTTCTAGAAATGGG----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108432460 106 - 171882078 TCCTGGCCTCCAGAACACAAGGGATCATGGAAAGTCTAAGATTTTATCAAGTGCCTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATCCCTATCTTCTAGAAATGGG----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        43193 106 -   2311642 TCCTGGCCTCCAGAACACAAGGGATCATGGAAAGTCTAAGATTTTATCAAGTGCCTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATCCCTATCTTCTAGAAATGGG----
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        41383 106 -   1987038 TCCTGCCCTCCAGAACACAAGGGATCATGGAAAGTCTAAGATTTTATCAAGTGCCTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATCCCTATCTTCTAGAAATGGG----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121629 106 -  24206276 TCCTGGCCTCCAGAACACAAGGGATCATGGAAAGTCTAAGATTTTATCAAGTGCCTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATCCGTATCTTCTAGAAATGGG----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36795 106 -   1397330 TCCTGCCCTCCAGAACACAAGGGATCATGGAAAGTCTAAGATTTTATCAAGTGCCTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATCCCTATCTTCTAGAAATAGG----
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        60271 106 -   1784207 TCCTGGCCTCCAGAACACAAGGGATCATGGAAAGTCTAAGATTTTATCAAGTGCCTCCAGCTCTGGTGTCCAAGTGTCCAGCAAATCCCTATCTTCTAGAAATGGG----
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262653 105 + 158406734 TCCTGGCCTCTAGAATGCAAGGGATCATGGAAAGTATGAGG-TATACCAAGTACCTCCAGCTCTGGTGTCCAGGTGTCCAGCAAATCTCCATCTTCTAGAAGTGGG----
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493550 104 +  54856640 TCCTGGCCTCTAGAATGCAAGGGATCATGG-AAGTCTGAGG-TATACCAAGTACCTCCAGCTCTGGTGTCCATGTGTCCAGCAAATCTCCATCTTCTAGAAGTGGG----
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636531 105 -   2910086 TCCTGGCCTCTAGAATGCAAGGGATCATGGAAAGTCTGAGG-TATACCAAGTACCTCCAGCTCTGGTGTCCATGTGTCCAATAAATCTCCATCTTCTAGAAGTGGG----
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664631 105 +  42888418 TCCTGGCCTCTAGAATGCAAGGGATCATGGAAAGTCTGAGG-TATACCAAGTACCTCCAGCTCTGGTGTCCATGTGTCCAGCAAATCTCCATCTTCTAGAAGTGGG----
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             649727 104 -  36342412 GCCTGGTCTCCACAACTCAAG-GATCATAGAAAGCTTGGGG-TTTTCCAAGTGCCTCCGGCCCTGGTGGGTGAGTGTCCAGAAAATCCCCACCTTGCAGAAGTGAC----
i otoGar3.GL873530          I 1 C 0
s canFam3.chr3               54426559  99 +  91889043 --CTGAACTCTACAGCTCCAG-GACTATAGGAAGCCTGAGC-TTTACCAAGTGCCTCCAGC-CTGGTAGCCAAGCGTATGGC--ACTTGTATCCTCCAAAAGTGAC----
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1821852 108 +   3943991 TCCTGACCTTTATAACTC-AGGGACTACAGAGAGTCTGAGA-TTTACCAAGTACCTCCAGCCCTGGTGGCCAAGTGTCCAGCAAATCTGCATCTTCCAGAGGCAACTAAG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113288194 113 + 116334831 I
e proCoq1.NW_012142813v1        33134 101 +     80520 I
e mm10.chr7                  81368022   0 + 145441459 C

a score=433216.000000
s hg38.chr15_KI270850v1_alt    354956 31 +    430880 TAAGA----CATTGTGCTCTTCC-----TAGAACAGACGT
s panTro5.chr15              63508355 31 +  83230942 TAAGA----CATTGTGCTCTTCC-----TAGAACAGACGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80465448 31 +  99763055 TAAGA----CATTGTGCTCTTCC-----TAGAACAGACGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        65632 31 -   1709092 TAAGA----CATTGTGCTCTTCC-----TAGAACAGACGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17225071 31 - 121039945 TAAGA----CATTGTGCTCTTCC-----TAGAACAGAGGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905826 31 + 169600520 TAAGA----CATTGTGCTCTTCC-----TAGAACAGAGGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108432566 31 - 171882078 TAAGA----CATTGTGCTCTTCC-----TAGAACAGAGGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        43299 31 -   2311642 TAAGA----CATTGTGCTCTTCC-----TAGAACAGAGGT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        41489 31 -   1987038 TAAGA----CATTGTGCTCTTCC-----TAGAACAGAGGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121735 31 -  24206276 TAAGA----CATTGTGCTCTTCC-----TAGAACAGAGGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36901 31 -   1397330 TAAGA----CATTGTGCTCTTCC-----TAGAACAGAGGT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        60377 31 -   1784207 TAAGA----CATTGTGCTCTTTC-----TAGAACAGAGGT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262758 31 + 158406734 TAAGA----CATTGTGCTCTTCC-----TAGAACAGAAGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493654 31 +  54856640 TAAGA----CATTGTGCTCTTCC-----TAGAACAGAAGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636636 31 -   2910086 TAAGA----CATTGTGCTCTTCC-----TAGAACAGAAGT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664736 31 +  42888418 TAAGA----CATTGTGCTCTTCC-----TAGAACAGAAGT
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        33235 31 +     80520 TAAGA----CACTGTGCTCCTCT-----TGGAGCACAAGC
i proCoq1.NW_012142813v1    I 101 C 0
s otoGar3.GL873530             649831 35 -  36342412 TAAGA-----ACTGTGCTGCTCTGCTTCTGGGGCAGAGGC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54426658 35 +  91889043 TAAGAAAAGCAGTGTGCTCTTCC-----TGGAGCAGAGGC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1821960 31 +   3943991 AAAGA----AAGTGTGCTTTTTG-----TGGAGCAGAGGC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113288194 113 + 116334831 I
e mm10.chr7                  81368022  0 + 145441459 C

a score=1306574.000000
s hg38.chr15_KI270850v1_alt    354987 80 +    430880 ACCCATCCCCA-TTCACATGCTGGCAGGAA-----ATCAGCTACAGACATCTCTCAGGGAAGTCAT-GGGGAGGAGAGGACCTGGCA
s panTro5.chr15              63508386 80 +  83230942 ACCCATCCCCA-TTCACATGCTGGCAGGAA-----ATCAGCTACAGACATCTCTCAGGGAAGTCAT-GGGGAGGAGAGGACCTGGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80465479 80 +  99763055 ACCCATCCCCA-TTCACATGCTGGCAGGAA-----ATCAGCTACAGACATCTCTCAGGGAAGTCAT-GGGGAGGAGAGGACCTGGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        65663 80 -   1709092 ATCCATCCCCA-TTCACATGCTGGCAGGAA-----ATCAGCTACAGACATCTCTCAGGGAAGTCAT-GGGGAGAAGAGGACCTGGCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17225102 80 - 121039945 ACCCATCCCCA-TTCACATGCTGGCAGGAA-----ATCAGCTACAGACATCTCTCAGGGAAGTCAC-GGGGAGGAGGGGACCTGGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905857 80 + 169600520 ACCCATCCCCA-CTCACATGCTGGCAGGAA-----ATCAGCTACAGACATCTCTCAGGGAAGTCAC-GGGGAGGAGACGACCTGGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108432597 80 - 171882078 ACCCATCCCCA-CTCACATGCTGGCAGGAA-----ATCAGCTACAGACATCTCTCAGGGAAGTCAC-GGGGAGGAGAGGACCTGGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        43330 80 -   2311642 ACCCATCCCCA-CTCACATGCTGGCAGGAA-----ATCAGCTACAGACATCTCTCAGGGAAGTCAC-AGGGAGGAGAGGACCTGGCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        41520 80 -   1987038 ACCCATCCCCA-CTCACATGCTGGCAGGAA-----ATCAGCTACAGACATCTCTCAGGGAAGTCAC-GGGGAGGAGAGGACCTGGCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121766 80 -  24206276 ACCCATCCCCA-CGCACATGCTGGCAGGAA-----ATCAGCTACAGACATCTCTCAGGGAAGTCAC-GGGGAGGAGAGGACCTGGCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        36932 80 -   1397330 ACCCATCCCCA-CTCACATGCTGGCAGGAA-----ATCAGCTACAGACATCTCTCAGGGAAGTCAC-GGGGAGGAGAGGACCTGGCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        60408 80 -   1784207 ACCCATCCCCA-CTCACATGCTGGCAGGAA-----ATCAGCTACAGACATCTCTCAGGGAAGTCAC-GGGGAGGACAGGACCTGGCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262789 84 + 158406734 ACCCATCCCCA-CTCACATGCTGGCAGGAATCGGCATCCGCCACAGATATCTCTCAGAGAAGTCAC--GGGAGGAGAGGACCTGGCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493685 85 +  54856640 ACCCATCCCCA-CTCACATGCTGGCAGGAATCAGCATCAGCCACAGATATCGCTCAGAGAAGTCAC-GGGGAGGAGAGGACCTGGCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636667 85 -   2910086 ACCCATCCCCA-TTCACATGCTGGCAGGAATCAGCATCAGCCACAGATATTGCTCAGAGAAGTCAC-GGGGAGGAAAGGATCTGGCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664767 85 +  42888418 ACCCATCCCCA-CTCACATGTTGGCAGCAATCAGCATTAGCCACAGATATCTCTCAGAGAAGTCAC-GGGGAGGAGAGGATCTGGCA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113288307 85 + 116334831 ACCCATCCTCA-CTCACATGCTGGCAGGGATCAGCATCAGCTACAGACAGCTCTCAGGGAAGTCAC-GAGGAAGAAGGGACCTGGCA
i micMur3.chr9              I 113 C 0
s proCoq1.NW_012142813v1        33266 86 +     80520 ACCCATCCCCA-CTCACATGCGGGCAGGGATCAGCATCAGCTACAGACAGCTCTCAGGGAAGTCACTGGGGAAAAAAGGACCTGGCG
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             649866 84 -  36342412 -ACCGTCCCCACCTTCCATGCTGGCA-GGATCAGCATCGGCCACAGAAAGCTCTTAGGGAAGTCAC-GGGGAGGAGAGGACCTGGCA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54426693 84 +  91889043 ACTCATCCCCA-CTCACATGCTGGCAAGAATCAGCATCAGCTACAGACAGCTCTCAG-GAAGTCAC-GGGGAGGAGAGGACCTGGCA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1821991 84 +   3943991 ACCCAACCCCA-CTCACATGCTGGCAGACATTAGCAGCAG-TACAGACAGCTCTTATAGAAGTCAC-AGGGAGGAGAGGACCTGGCA
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81368022  0 + 145441459 C

a score=7061433.000000
s hg38.chr15_KI270850v1_alt    355067 449 +    430880 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAGAGACCAAATCAGCAGTGA-TATTTTTAGACTGATTGTTAATTTTCTCTACTTTCACCCT----TC--TATGCCAGCTCCTGTCGGTTTTACAGCTGAGTCACTGTTCAAATTTTCGGAAGCCT-------TCCCC-AAGAGTACAAAGGCACCTGGAGTGTGATGGCAGCATTAGCAATGGCAACAAGAG---CCTGGCACTGAATGCCTGCATTATAAGA--CC---ATCTGAGCTTGAGCTTAGCTGAAGGAGAGACTAGCCCCAAGAC-ATGATGGTCAGATATTTGTTATCTAATGGGAATAGTCTAATGGGGGAAAAAATCTAACGGGGAAAATCCAGACCAGGAGCCATTATTTCTAGCCTGTGATATAAGGCCGTA--TACCTGGAACCCTT-CTTCCCTATCACCATCCTTGGTT-CT-AGGTTGCTT-AC
s panTro5.chr15              63508466 449 +  83230942 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAATTTTCTCTACTTTCACCCT----TC--TATGCCAGCTCCTGTCGGTTTTACAGCTGAGTCACTGTTCAAATTTTTGGAAGCCT-------TCCCC-AAGAGTACAAAGGCACCTGGAGTGTGATGGCAGCATTAGCAATGGCAACAAGAG---CCTGGCACTGAATGCCTGCATTATAAGA--CC---ATCTGAGCTTGAGCTTAGCTGAAGGAGAGACTAGCCCCAAGAC-ATGATGGTCAGATATTTGTTATCTAATGGGAATAGTCTAATGGGGAAAAAAATCTAACGGGGAAAATCCAGACCAGGAGCCATTATTTCTAGCCTGTGATATAAGGCCGTA--TACCTGGAACCCTT-CTTCCCTATCACCATCCTTGGTT-CT-AGGTTGCTT-AC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80465559 449 +  99763055 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAATTTTCTCTACTTTCACCCT----TC--TATGCTAGCTCCTGTCGGTTTTACAGCTGAGTCACTGTTCAAATTTTTGGAAGCCT-------TCCCC-AAGAGTACAAAGGCACCTGGAGTGTGATGGCAGCATTAGCAATGGCAACAAGAG---CCTGGCACTGAATGCCTGCATTATAAGA--CC---ATCTGAGCTTGAGCTTAGCTGAAGGAGAGACTAGCCCCAAGAC-ATGATGGTCAGATATTTGTTATCTAATGGGAATAGTCTAATGGGGAAAAAAATCTAACGGGGAAAATCCAGACCAGGAGCCATTATTTCTAGCCTGTGATATAAGGCCGTA--TACCTGGAACCCTT-CTTCCCTATCACCATCCTTGGTT-CT-AGGTTGCTT-AC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        65743 449 -   1709092 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAATTTTCTCTACTTTCACCCT----TC--TATGCCAGCTCCTGTTGGTTTTACAGCTGAGTCACTGTTCAAATTTTCGGAAGCCT-------TCCCC-AAGAGTACAAAGGCACCTGGAGTGTGATGGCAGCATTAGCAATGGCAACAAGAG---CCTGGCACTGAATGCCTGCATTATAAGA--CC---ATCTAAGCTTGAGCTTAGCTGAAGGACAGACTAGCCCCAAGAC-ATGATGGTCAGATATTTGTTATCTAATGGGAATAGTCTAATGGGGAAAAAAATCTAATGGGGAAAATCCAGACCAGGAGCCATTACTTCTAGCCTGTGATATAAGGCCGTA--TACCTGGAACCCTT-CTTCCCTATCACCATCCTTGGTT-CT-AGGTTGCTT-AC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17225182 449 - 121039945 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGAATGATTGCTAATTTTCTCTACTTTCACCCT----TC--TATGCCAGCTCCTGTCGGTTTTACAGCTGAGTCACTGTTCGAATTTTCGGAAGCCT-------TCCCC-AAGAGTACAAAGGCACCTGGAGTGTGATGGCAGCATTAGCAATGGCAACAAGAG---CCTGGCACTGAATGCCTGCATTATAAGA--CC---ATCTGAGCTTGAGCTTAGCTGAAGGAGAGACTAGCCCCAAGAC-ATGATGGTCAGGTGCTTGTTATCTAATGGAAATAGTCTAATGGGGAAAAAAATCTAATGGGTAAAATCCAGACCAGGAGCCATTATTTCTAGCCTATGATATAAGGCCGTA--TACCTGGAACCCTT-CTTCCCTATCACCATCCTTGGTT-CT-AGGTTGCTT-AC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60905937 444 + 169600520 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAACTTTCTCTACTTTCAACCT----TC--TATGCCAACTCCTGTCGGTTTTACAGCTGAGTCACTGTTCGAATTTTTGGAAGCCT-------TCCCC-AAGAGTACAAAGGCACCTGAAGTGTGATGGCAGCATTAGCAACGGCAACAAGGG---CCTGGCAGTGAATGCCTGCATTGTAAGA--CT---GTCTGAGCTTTAGCTTAGCTGAAGGAGACACTAGCCCCAAGAC-ATGATAGTCAGATGCTTGTTATCTAATGGGAATAGTCTAATGGGGAAAAAAATCTAATGGGGAAAATCCAGACCGGGAGCCATTATTTCTAGCC-----TATAAGGCCGTA--TACCTGGAACCCTT-CTTCTCTATCACCATCCTTGGTT-CT-AGGTTGCTC-GC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108432677 444 - 171882078 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAACTTTCTCTACTTTCAACCT----TC--TATGCCAACTCCTGTCGGTTTTACAGCTGAGTCACTGTTCGAATTTTTGGAAGCCT-------TCCCC-AAGAGTACAAAGGCACCTGAAGTGTGATGGCAGCATTAGCAATGGCAACAAGGG---CCTGGCAGTGAATGCCTGCATTGTAAGA--CT---GTCTGAGCTTTAGCTTAGCTGAAGGAGACACTAGCCCCAAGAC-ATGATAGTCAGATGCTTGTTATCTAATGGGAATAGTCTAATGGGGAAAAAAATCTAATGGGGAAAATCCAGACCGGGAGCCATTATTTCTAGCC-----TATAAGGCCGTA--TACCTGGAACCCTT-CTTCTCTATCACCATCCTTGGTT-CT-AGGTTGCTC-GC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        43410 444 -   2311642 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAACTTTCTCTACTTTCAACCT----TC--TATGCCAACTCCTGTCGGTTTTACAGCTGAGTCACTGTTCGAATTTTTGGAAGCCT-------TCCCC-AAGAGTACAAAGGCACCTGAAGTGTGATGGCAGCATTAGCAATGGCAACAAGGG---CCTGGCAGTGAATGCCTGCATTGTAAGA--CT---GTCTGAGCTTTAGCTTAGCTGAAGGAGACACTAGCCCCAAGAC-ATGATAGTCAGATGCTTGTTATCTAATGGGAATAGTCTAATGGGGAAAAAAATCTAATGGGGAAAATCCAGACCGGGAGCCATTATTTCTAGCC-----TATAAGGCCGTA--TACCTGGAACCCTT-CTTCTCTATCACCATCCTTGGTT-CT-AGGTTGCTC-GC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        41600 444 -   1987038 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAACTTTCTCTACTTTCAACCT----TC--TATGCCAACTCCTGTCGGTTTTACAGCTGAGTCACTGTTCGAATTTTTGGAAGCCT-------TCCCC-AAGAGTACAAAGGCACCTGAAGTGTGATGGCAGCATTAGCAATGGCAACAAGGG---CCTGGCAGTGAATGCCTGCATTGTAAGA--CT---GTCTGAGCTTTAGCTTAGCTGAAGGAGAGACTAGCCCCAAGAC-ATGATAGTCAGATGCTTGTTATCTAATGGGAATAGTCTAATGGGGAAAAAAATCTAATGGGGAAAATCCAGACTGGGAGCCATTATTTCTAGCC-----TATAAGGCCGTA--TACCTGGAACCCTT-CTTCTCTATCACCATCCTTGGTT-CT-AGGTTGCTC-GC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21121846 449 -  24206276 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAACTTTCTCTACTTTCAACCT----TC--TATGCCAACTCCTGTCGGTTTTACAGCTGAGTCACTGTTCGAATTTTTGGAAGCCT-------TCCCC-AAGAGTACAAAGGCACCTGGAGTGTGATGGCAGCATTAGCAATGGCAACAAGGG---CCTGGCAGTGAATGCCTGCATTGTAAGA--CT---GTCTGAGCTTTAGCTTAGCTGAAGGAGAGACTAGCCCCAAGAC-ATGATAGTCAGATGCTTGTTATCTAATGGGAATAGTCTAATGGGGAAAAAAATCTAATGGGGAAAATCCAGACCCGGAGCTATTATTTCTAGCCTATGATATAAGGCCGTA--TACCTGGAACCCTT-CTTCTCTATCACCATCCTTGGTT-CT-AGGTTGCTC-GC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        37012 444 -   1397330 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAACTTTCTCTACTTTCAACCT----TC--TATGCCAACTCCTGTCGGTTTTACAGCTGAGTCACTGTTCGAATTTTTGGAAGCCT-------TCCCC-AAGAGTACAAAGGCACCTGAAGTGTGATGGCAGCATTAGCAATGGCAACAAGGG---CCTGGCAGTGAATGCCTGCATTGTAAGA--CT---GTCTGAGCTTTAGCTTAGCTGAAGGAGAGACTAGCCCCAAGAC-ATGATAGTCAGATGCTTGTTATCTAATGGGAATAGTCTAATGGGGAAAAAAATCTAATGGGGAAAATCCAGACCGGGAGCCATTATTTCTAGCC-----TATAAGGCCGTA--TACCTGGAACCCTT-CTTCTCTATCACCATCCTTGGTT-CT-AGGTTGCTC-GC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        60488 449 -   1784207 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTAATTGTTAACTTTCTCTACTTTCACCCT----TC--TATGCCAACTCCTGTCGGTTTTACAGCTGAGTCACTGTTCGAATTTTTGGAAGCCT-------TCCCC-AAGAGTACAAAGGCACCTGGAGTGTGATGGCAGCATTAGCAATGGCAACAAGGG---CCTGGCAGTGAATGCCTGCATTATAAGA--CT---GTCTGAGCTTTAGCTTAGCTGAAGGAGAGACTAGCCCCAAGAC-ATGATAGTCAGATGCTTGTTATCTAATGGGAATAGTCTAATGGGGAAAAAAATCTAATGGGGAAAATCCAGACCGGGAGCCATTATTTCTAGCCTGTGATATAAGGCCATA--TACCTGGAACCCTT-CTTCTCTATCACCATCCTTGGTT-CT-AGGTTGCTC-GC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22262873 432 + 158406734 GAGTGTGCCAGTTCATTAATGCTACCTCAGAGAGTATGAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAACTTTCTCTCCTTTCACCCT----TC--TATGCCAGCTCCTGTCGGTTTCACAGCTGAGTCACTGTTCGAATTTTCGGAAGCCT-------TCCCC-AAGAGTACAAAGGCACCTAGAGTGTGATAGCAGCATCTGCAATGGCAACAAGGG---CTTGGCACTGTATGTCTGTATTATAAGA--CC---GTCTGAGGTTGAGCTTAGTTGAAGCAGAGACTAGCCCCAAAAC-ATGATAGTCAAATGCTTGTTACCTAATGGGAATAGTCTAATGGGG-----------------AAAATCCAGACCAGGAGCCATTATTTCTAGCCTGTGATATAAATCCATA--CACCTGAAACTCTT-CTTCCCCATCGCCATCCTTGGTT-CT-AGGATGCTT-GC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50493770 430 +  54856640 GAGCGTTCCAGTTCATTAATGCTACCTC--AGAGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAACTTTCTCTCCTTTTACCCT----TC--TATGCCATCTCCTGTCGGTTTTACAGCTGAGTCACTGTTCGAATTTTCGGAAGCCT-------TCCCC-AAGAGTACAAAGGCACCTAGAGTGTGATGGCAGTATTTGCAATGGTAACAAGGG---CTTGGCACTGTATGTCTGCATTATAAGA--CC---ATCTGAGGTTGAGCTTAGCTGAAGCAGAGACTAGCCCCAAAAC-ATGATAGTCAAATGCTTGTTACCTAATGGGAGTAGTCTAATGGGG-----------------AAAATCCAGACCAGGAGCCATTATTTCTAGCCTGTGATATAAGACCATA--TTCCTGAAACTCTT-TTTCCCTATCGCCATCCTTGGTT-CT-AGGATGCTT-GC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       636752 433 -   2910086 GAGCGTTCCAGTTCATTAATGCTACCTCAGAGAGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAACTTTCTCTCCTTTCACCCT----TC--TATGCCAGCTCCTGTCGGTTTTACAGCTGAGTCACTGTTCGAATTTTCGGAAGCCT-------TCCCCAAAGAGTACAAAGGCACCTAGAGTGTGATGGCAGCATTTGCAATGGTAACAAGGG---CTTGGCACTGTATGTATGCATTATAAGA--CC---GTCTGAGGTTGAGCTTAGCCGAAGCAGAGACTAGCACCAAAAC-GTGATAGTCAAATGTTTGTTACTTAATGGGAATAGTCTAATGGGG-----------------AAAATCTGGACCAGGAGCCATTATTTCTAGCCTGTGATATAAGGCCATA--TACCTGAAACTCTT-CTTCCCTATCACCATCCTTGATT-CT-AGGATGCTT-GC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40664852 432 +  42888418 GAGTGTTCCAGTTCATTAATGCTACCTCAGAGAGTATAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAACTTTCTCTCCTTTCACCCT----TC--TATGCCAGCTCCTGTCGGTTTTACAGCTGAGTCACTGTTCGAATTTTCGGAAGTCT-------TCCCC-AAGAGTACAAAGGCACCTAGAGTGTGATGGCAGCATTTGCAATGGCAACAAGGG---CTTGGCACTGTATGTCTGCATTATAAGA--CC---ATCTGAGATTGAGCTTAGCTGAAGCAGAGACTAGCCCCAAAAC-ATGATAGTCAAATGCTTGTTACCTGATGGGAATAGTCTAATGGGG-----------------AAAATCCAGACCAGGAGCCATTATTTCTAGCCTGTGATATAAGGCCATA--TACCTGAAACTCGT-CTTCCCTATCGCCATCCTTGGTT-CT-AGGATGCTT-GC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113288392 433 + 116334831 GAGGGTTCCAGTTCATTAATGCTACCTCAGAGGGTACAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAACTTTCTCTACTTTCATCCT----TC--TATGCCAGCTCTTGTGGGTTTTACAGCTGAGTCACTGCTGGAATTTTCTGAAGCCT-------TCCCC-AAGAGTACAAAGGCACCCAGAGTCTGATGGCAGCATTAGCGATGGCAACAAGGG---CCTGGCACTAGATGCTTGCATTGTAAGACACT---GCCTGAGCCTGAGCTCAGCTACAGGAGAGATTAGGCCCAACAT-ATCATGATCAGACACTTGCTAAATAACAGGAGTGGTC--ATGGGG-----------------AAAATCCAGACCAGGAGCCATTATTTCCAGCCTGAGATATAGGGCCATA--TACCTGGACCCCTTCCCTGCCAATTACTATCCTTGGTT-CT-AGGTTGCTT-GC
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        33352 434 +     80520 GAGGGTTCCAGCTCATTAATGCTACCTCAGAGGATACAAGAGACCAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAACTTTCTCTACTTCCATATT----TC--TATGCCAGCTCTTGTGGGTTTTACAGCTGAGTCACTACTGGAATTTTCTGAAGCCT-------TCCCC-AAGAGTACAAAGGCACCCAGAGTCTGATGGCAGCATTAGCGATGGCAGCAAGGG---CCTGGCACTAGATGCTTGCATTGTAAGACACT---GTCTGAGCCTGAGCTCAGCTACAGGAGAGATCAGGCCCAACCT-ATCATGATCAGACACTAGCTAACTAACGAGAATGGTC--ATGGAG-----------------AAAATCCAGACCAGGAGCCATTATTTCCAGCCTGAGACAAAAGGCCATA--TACCTGGACCCCTTCCCTTCCTATTGCTATCCTTGGTT-CT-AGGTTGCCTGGC
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             649950 434 -  36342412 GAGGGTTCCAGCTCATTATTGCTACCTCAGAGGGTACAAGAGTCCAAATCAGCAGTAG-TATTTTTAGACTGATTGTTAACTTTCTCTGCTTTCACCCT----TC--TATGCCAGCTCTTGTGGATTTTACAGCTGAGTCACTGCTGGAATTTTTTGAAGCCT-------TCCCC-ACGAGCACAAAGGCACCCAGAGTCTGATGGCAGCGTTAGCGATGGCTGCAAGGG---CCTGGCACTGGACGCTTGCATTGTAAGATGCT---GTCTGAGCTGGAGCTCAGCTATGGGAGAGATCAGGCCCAAGTTGATTAAGATCAGACACT-GTTAACTAATTGAAGTAGTC--ATGGGA-----------------AAAATACAGACCAGAAGCCATTATTTCCAACATGAGATGTGAAGCTGTACCTACCTGGAAACCTT-GCTTCCTATTGCTGTCCTTGGTT-CT-AGATTGCTT-GC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81368022 402 + 145441459 GAAGGTTCCAACTCATTAATGCCATTTCAGAG--CACAAGAGACCAAATCAGCAGTAATTATTTTTAGACTGATTTTAAACTTTCTCTACTTTCAGCCTTCTCTC--TATGCCAGGTCT--CCAGTTTTTCAGCTGAGTCACTGTTGGAATTTTCTGAAGCCTGCCTCCCTCTCC-AAGAGTCTAAAGGTGCCCAGA-TCTGATGTTAGCACTGGCAA---CAGTAGTGG---GTTGGGACTGGAGGCCGTTATCACAAGA--CACAGCTCTCAGCTCAAGCTCA--------------------CAGGAC-ACAATCATCAAATACTTGTAATCT-ATAAGTGCAGTC--ACAGGG-----------------AAAAT-----CTTGGAGCCATCACTCCAATCCTAGG-TGTATGGCTGTA--TACTGGAAGCCTAT-GTG---------TACCCTTAGTT-CTGAGGCTGCCT-GC
i mm10.chr7                 C 0 I 1
s canFam3.chr3               54426777 428 +  91889043 GAGGGTTCCAGCTCATTAATGCTACCTCAGAGGGTACAAGAGACCAAATCAGCAGTAA-TATTTTTAGACCGACTGTTAACTTTCTCCACTTTCACCCT----TC--TACGCCAGCTCCTGTGGGTTTTATAGCTGAGTCACTGTTTGAATTTTCTGAAGCCT-------TCCCC-AAAAGTACAAAGTCACCCAGAGTCTGATGGTGGCAGCAGCAATGGTAGTAAGAG---CTTGGCACTAGATGTGGGTATTGCAAGA--CC-----CTACGTTTAAGCTCAG-TAGGGGAGAGACTAGGCCTAAGAC-ATTACAGTCAGATGCCTGCTATCTACTGGGAGTAGTC--ATGGAA-----------------AAAGCCCAGACCAGGAGCCATTATTTCTAGCCTGAGATTTAGGACCACA--TACTAGAACTGTTC-CTTTCCTATCACAACCCTTGGGCACC-GGACTGCTT-GC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1822075 406 +   3943991 GAGTGTTCCAACTCATTAATGCTACCTCAGAGGGTACAGGAGGCGAAATCAGCAGTAA-TATTTTTAGACTGATTGTTAACTTTCTCCACTTTCACCCT----TCTATATGCCAGCTCCTGTGGGTTTTTGAGCTGAGTCACTGCTCAAATTTTCTGTACCCT-------TCCCC-AAGAGTACAAAGGTATCTAGAGCCTGATGGCAGCAGCAGGAATGGTGGCAAAGGCTTCCTGACATGGGATG----------------CT------------TGAGTTCAGCTGGGACAGAAACCAGGCCCAAAGT-AGCAGAGCTATAT----GTTATCTAACAGGCATAGCT--GAGAGA-----------------AAAATATAGCACAGAAGCCATTATTTCTAGCCTTGGATATAAAGTTTCA--TACCTGGAACCCTT--TCTTCTCTCCCTGTCCTTGGT--CT-AGGATGCTT-GC
i dasNov3.JH570731          C 0 C 0

a score=1553597.000000
s hg38.chr15_KI270850v1_alt    355516 107 +    430880 TCAGGATCTCTCTGAAGGA------AT--------AG-----GA-----AGGGGGGAGAGTAGCATTCATTCCATGTATGAAAACAGACCACTC--TGC--CTGTGACCCCAAATCTGCAACTCTATACCATATC
s panTro5.chr15              63508915 107 +  83230942 TCAGGATCTCTCTGAAGGA------AT--------AG-----GA-----AGGGGGGAGAGTAGCATTCATTCCATGTATGAAAACAGACCACTC--TGC--CTGTGACCCCAAATCTGCAACTCTATACCCTATC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466008 107 +  99763055 TCAGGATCTCTCTGAAGGA------AT--------AG-----GA-----AGGGGGGAGAGTAGCATTCATTCCATGTATGAAAACAGACCACTC--TGC--CTGTGACCCCAAATCTGCAACTCTATACCCTATC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66192 106 -   1709092 TCAGGATCTCTCTGAAGGA------AT--------AG-----GA-----A-GGGGGAGAGTAGCATTCATTCCATGTATGAAAACAGACCACTC--TGC--CTGTGACCCCAAATCTGCAACTCTATACCATATC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17225631 107 - 121039945 TCAGGATCTCTCTGAAGGA------AC--------AG-----GA-----AGAGGGGAGAGTAGCATTCATTCCAGGTATGAAAACAGACCACTC--TGC--CTGTGACCCCAAATCTGCAACTCTATACCATATC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60906381 107 + 169600520 TCAGGATCTCTCTGAAGGA------AC--------AG-----GA-----AGAGGGGAGAGTAGCATTCATTCCAGGTATGAAAACAGACCACTC--TGC--CTGTGACCCCAAATCTGCAACTCTATACCATATC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433121 107 - 171882078 TCAGGATCTCTCTGAAGGA------AC--------AG-----GA-----AGAGGGGAGAGTAGCATTCATTCCAGGTATGAAAACAGACCACTC--TGC--CTGTGACCCCAAATCTGCAACTCTATACCATATC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        43854 107 -   2311642 TCAGGATCTCTCTGAAGGA------AC--------AG-----GA-----AGAGGGGAGAGTAGCATTCATTCCAGGTATGAAAACAGACCACTC--TGC--CTGTGACCCCAAATCTGCAACTCTATACCATATC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42044 107 -   1987038 TCAGGATCTCTCTGAAGGA------AT--------AG-----GA-----AGAGGGGAGAGTAGCATTCATTCCAGGTATGAAAACAGACCACTC--TGC--CTGTGACCCCAAATCTGCAACTCTATACCATATC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21122295 107 -  24206276 TCAGGATCTCTCTGAAGGA------AT--------AG-----GA-----AGAGGAGAGAGTAGTATTCATTCCAGGTATGAAAACAGACCACTC--TGC--CTGTGACCCCAAATCTGCAACTCTATACCATATC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        37456 107 -   1397330 TCAGGATCTCTCTGAAGGA------AT--------AG-----GA-----AGAGGGGAGAGTAGCATTCATTCCAGGTATGAAAACAGACCACTC--TGC--CTGTGACCCCAAATCTGCAACTCTATACCATATC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        60937 107 -   1784207 TCAGGATCTCTCTGAAGGA------AT--------AG-----GA-----AGAGGGGAGAGTAGCATTCATTCCAGGTATGAAAACAGACCACTC--TGC--CTGTGACCCCAAATCTGCAACTCTATACTGTATC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22263305 107 + 158406734 TCAGGATCTCTCTGAAGGC------AC--------AG-----GA-----AGCGGGGAGAGAAGCATTCATTCTAGGTATGAAAACAGACCACTC--TGC--CTGTGACTCCAAATCTGCAACTCTACGCCACATC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50494200 107 +  54856640 TCAGGATCTCTCTCAGGGC------AC--------AG-----GA-----AGCGGGGAGAGAAGCATTCATTCTAGATATGAAAACAGAACACTC--CGT--CTGTGACTCCAAATCTGCAACTCTATACCACATC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       637185 107 -   2910086 TCAGGATCTCTCTGAAGGC------AC--------AG-----GA-----AGCAGGGAGAGAAGCATTCATTCTAGCTATGAAAACAGACCACTC--CGC--CTGTGACTCCAAATCTGCAACTCTACACCACATC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40665284 107 +  42888418 TCAGGATCTCTCTGAAGGC------AC--------AG-----GA-----AGCGGGGAGAGAAGCATTCATTCTAGGTATGAAAACAGACTACTC--CAT--CTGTGACTCCAAATCTGCAACTCTACACCAACTC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113288825 113 + 116334831 TCAGAATCCATCTGGAGGCAGAGAGGT--------AG-----GA-----AAGCGGCAGGGGAGCAATTATCCCAGGTATAAAAACAGACAACTC--TGC--CTGTGACCCCAAATCTGCAATTCTACACCATACC
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        33786 118 +     80520 TCAGAATCCATCTGGAGGCATAGAGGT--------AG-----GAAGGGGAGGCAGGAGGGAAGCACTTATCCCAGGTATAAAAGCAGACCACTC--TGC--CTGTGACCCCAAATCTGCAATCCTACACCATATC
i proCoq1.NW_012142813v1    C 0 I 91
s otoGar3.GL873530             650384 103 -  36342412 TCAGAATCTATTTGGAGGCACAGA-GT--------AG-----GA-----AGAGGGGAAGGAAGCACTCAGCTTGGATATGAAA-CAGACCACTC--TGC--TTGCAACCCCAAATCTATAACTCTGC--------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54427205 114 +  91889043 TCAAAATCCATCTGAAGGC------AC--------AGAGGTAGG-----AAGGGGGAGGGCAGCACTCATTCTAGGTATAACAACAGATTGCTCTTTGC--CTAGAACTCCAATGCTGCAACTATACACCATACC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1822481 117 +   3943991 TCAGGATCTATCTGAAGTC------ATTAGAGGTGGG-----GA-----ACAGGGGAAGGCAGAACCTAACCCAGGTATGAAAACAGACAGTTC--TTCCTCTGTAATCCCAAACCCACAACTCTACATCATATC
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81368424   1 + 145441459 I

a score=101265.000000
s hg38.chr15_KI270850v1_alt    355623 10 +    430880 TCTACT---GTGG-
s panTro5.chr15              63509022 10 +  83230942 TCTACT---GTGG-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466115 10 +  99763055 TCTACT---GTGG-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66298 10 -   1709092 TCTACT---GTGG-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17225738 10 - 121039945 TCTACT---GTGG-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60906488 10 + 169600520 TCTACT---GTGG-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433228 10 - 171882078 TCTACT---GTGG-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        43961 10 -   2311642 TCTACT---GTGG-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42151 10 -   1987038 TCTACT---GTGG-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21122402 10 -  24206276 TCTACT---GTGG-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        37563 10 -   1397330 TCTACT---GTGG-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61044 10 -   1784207 TCTACT---GTGG-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22263412 10 + 158406734 TCAACC---GTGG-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50494307 10 +  54856640 TCAACC---GTGG-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       637292 10 -   2910086 TCAACC---GTGG-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40665391 10 +  42888418 TCAACC---GTGG-
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113288938 10 + 116334831 CCAACT---GTGG-
i micMur3.chr9              C 0 I 198
s otoGar3.GL873530             650487 10 -  36342412 TCAGGT---GGGA-
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54427319 13 +  91889043 CCAACTTAAGTGG-
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1822598 10 +   3943991 -CTAAA---TCAGA
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        33904 91 +     80520 I
e mm10.chr7                  81368424  1 + 145441459 I

a score=553282.000000
s hg38.chr15_KI270850v1_alt    355633 58 +    430880 CGGTA---AACA---GAGTGTGGACTTCCCC--CCGACTGTGGATCCCACAAGTTCAAGTT-AGTGA
s panTro5.chr15              63509032 58 +  83230942 CAGTA---ATCA---GAGTGTGGACTTCCCC--CCGACTGTGGATCCCACAAGTTCAAGTT-AGTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466125 58 +  99763055 CGGTA---ATCA---GAGTGTGGACTTCCCC--CCGACTGTGGATCCCACAAGTTCAAGTT-AGTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66308 58 -   1709092 CAGTA---ATCA---GAGTGTGGACTTCCCC--CCGACTGTGGATCCCACAAGTTCAAGTT-AGTGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17225748 58 - 121039945 CAGTA---ATCA---GAGTGTGGAATTCCCC--CCGACTGTGGATCCCGCAAGTTCAAGTT-AGTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60906498 58 + 169600520 CAGTA---ATC-----AGTGTGGACTTCCCCCTCCAACTGTGGATCCCACAAGTTCAAGTT-AGTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433238 58 - 171882078 CAGTA---ATC-----AGTGTGGGCTTCTCCCTCCAACTGTGGATCCCACAAGTTCAAGTT-AGTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        43971 58 -   2311642 CAGTA---ATC-----AGTGTGGACTTCCCCCTCCAACTGTGGATCCCACAAGTTCAAGTT-AGTGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42161 58 -   1987038 CAGTA---ATC-----AGTGTGGACTTCCCCCTCCAACTGTGGATCCCACAAGTTCAAGTT-AGTGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21122412 58 -  24206276 CAGTA---ATC-----AGTGTGGACTTCCCCCTCCGACTGTGGATCCCACAAGTTCAAGTT-AGTGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        37573 58 -   1397330 CAGTA---ATC-----AGTGTGGACTTCCCCCTCCAACTGTGGATCCCACAAGTTCAAGTT-AGTGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61054 58 -   1784207 CAGTA---ATC-----AGTGTGGACTTCCCCCTCCGACTGTGGATCCCACAAGTTCAAATT-AGTGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22263422 63 + 158406734 TGGTAATGATGA---GAGTGTGGACTCCCCCTGCTGACTGTGGATCCCACAAGTTCAAGTT-AGTGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50494317 61 +  54856640 CGGTA---ATGA---GAGTGCGGACTCCCCCTGCTGACTGTGGATCCCACAAGTTCAAGTTAAGTGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       637302 60 -   2910086 TGGTA---ATGA---GAGTGTGGACTCCCCCTGCTGACTGTGGATCCCACAAGTTCAAGTT-AGTGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40665401 60 +  42888418 GGGTA---ATGA---GAGTGTGGACTCCCCCTGCTGACTGTGGATCCCACAAGTTCAAGTC-AGTGA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             650497 48 -  36342412 ---TG---CTCT---GAGT-TGGACTTCCCCCACTGACTCTAGATCCCATGGGTCCAA---------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54427332 59 +  91889043 CAGTC---TCCA---GAGTGT-CAGTGCCTCTACTGACTCTGGATCCCACAGGTCCAAGGT-GGTAC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1822608 62 +   3943991 TGGTG---ACCGTTTGAATCTGAACT-CCCCTACTGATTCTGGGTCCCGCAAGTCTAAGAT-GGTAC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113288948 198 + 116334831 I
e proCoq1.NW_012142813v1        33904 91 +     80520 I
e mm10.chr7                  81368424  1 + 145441459 I

a score=976267.000000
s hg38.chr15_KI270850v1_alt    355691 73 +    430880 CAAACACAGCCCTTCTCCCCAGTATAACTCCCAGTCTTGATCATCAG-GCAAGTTCCATTACCTGTAGAAAAGA
s panTro5.chr15              63509090 73 +  83230942 CAAACACAGCCCTTCTCCCCAGTATAACTCCCAGTCTTGATCATCAG-GCAAGTTCCATTACCTGTAGAAAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466183 73 +  99763055 CAAACACAGCCCTTCTCCCCAGTATAACTCCCAGTCTTGATCATCAG-GCAAGTTCCATTACCTGTAGAAAAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66366 73 -   1709092 CACACACAGCCCTTCTCTCCAGTATAACTCCCAGTCTTGATCATCAG-GCAAGTTCCATTACCTGTAGAAAAGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17225806 73 - 121039945 CAAACACAGCCCTTCTCCCCAGTATAACTCCCAGTCTTGATCATCAG-GCAAGTTCCATTACCTGTAGAAAAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60906556 73 + 169600520 CAATCACAGCCTTTCTCCCCAGTATAACTCGCAATCTTGATCATCAG-GCAAGTTCCATTACCTGCAGAAAAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433296 73 - 171882078 CAATCACAGCCTTTCTCCCCAGTATAACTCGCAATCTTGATCATCAG-GCAAGTTCCATTACCTGCAGAAAAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44029 73 -   2311642 CAATCACAGCCTTTCTCCCCAGTATAACTCGCAATCTTGATCATCAG-GCAAGTTCCATTACCTGCAGAAAAGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42219 73 -   1987038 CAATCACAGCCTTTCTCCCCAGTATAACTCGCAATCTTGACCATCAG-GCAAGTTCCATTACCTGCAGAAAAGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21122470 73 -  24206276 CAATCACAGCCTTTCTCCCCAGTATAACTTGCAATCTTGATCATCAG-GCAAGTTCCATTACCTGCAGAAAAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        37631 73 -   1397330 CAATCACAGCCTTTCTCCCCAGTATAACTCGCAATCTTGACCATCAG-GCAAGTTCCATTACCTGCAGAAAAGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61112 73 -   1784207 CAAACACAGCCTTTCTCCCCAGTATAATTCGCAGTCTTGATCATCAG-ACAAGTTCCATTACCTGCAGAGAAGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22263485 72 + 158406734 CAAACACAGCCCTTCTCCCCAGTGT-ACACCCAGTCCTGATCACCAG-GCAAGTTCCATTACCTACAGAAAAGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50494378 73 +  54856640 CAAACACAGCCCTTCTCCCCAGTGTAACACCCAGTCCTAATCACCAG-GAAAGTTCCATTACCTGCAGAAAAGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       637362 73 -   2910086 CAAACACAAACCTTCTCCCCAGTGTAACACCCAGTCCTGATCACCAG-GCAAGTTCCATTACCTGCAGAAAAGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40665461 73 +  42888418 CAAACACAGCCCTTCTCCCCACTGTAACACCTAGTCTTGATCACCAG-GCAAGTTCCATTACCTGCAGAAAAGA
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        33995 73 +     80520 CAAAGACAGCCCTTCGCCCTAGTGTAACTCCCAATTTTGATCACTAG-ACAAGTTCCACTACCTGCAGAAAAGA
i proCoq1.NW_012142813v1    I 91 I 230
s otoGar3.GL873530             650545 70 -  36342412 ----ACAAGCCTTTCTCCCCAGAATAATTTCCAATCTTGATCACTGGAACGTGTTCCATTACCTGTAGAAAAGA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54427391 59 +  91889043 CAAATATAGCCTTTCTCCC--------------ATCTTGATCATTGG-ACAAGTTTCATTACCTAAAGAAATGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1822670 73 +   3943991 CAAACATACCCCTTCTCCCCAGTGTGACTGCCAATCTTGCTCTTTGG-ATGGGTTCCACTGCCTGCAAAGACGA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113288948 198 + 116334831 I
e mm10.chr7                  81368424  1 + 145441459 I

a score=521233.000000
s hg38.chr15_KI270850v1_alt    355764 38 +    430880 CATATTCATGTCCC-TTGTAAGGTCAGCACACATC---CTGC
s panTro5.chr15              63509163 38 +  83230942 CATATTCATGTCCC-TTGTAAGGTCAGCACACATC---CTGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466256 38 +  99763055 CATATTCATGTCCC-TTGTAAGGTCAGCACACATC---CTGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66439 38 -   1709092 CATATTCATGTCCC-TTGTAAGGTCAGCACACATC---CTGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17225879 38 - 121039945 CATATTCATGTCCC-TTGTAAGGTCAGCACACATC---CTGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60906629 38 + 169600520 CATATTCATGTCCC-TTGTAAGGTCAGCACACATC---CTGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433369 38 - 171882078 CATATTCATGTCCC-TTGTAAGGTCAGCACACATC---CTGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44102 38 -   2311642 CATATTCATGTCCC-TTGTAAGGTCAGCACACATC---CTGC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42292 38 -   1987038 CATATTCATATCCC-TTGTAAGGTCAGCACACATC---CTGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21122543 38 -  24206276 CATATTCATGTCCC-TTGTAAGGTCAGCACACATC---CTGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        37704 39 -   1397330 CATATTCATATCCCTTTGTAAGGTCAGCACACATC---CTGC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61185 38 -   1784207 CATATTCATGTCCC-TTGTAAGGTCAGCACACATC---CTGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22263557 38 + 158406734 CATATTCATGTCCC-TTGTAAGGTCAGCACACATC---CTGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50494451 38 +  54856640 CATATTCATGTCCC-TTGTAAGGTCAGCACACATC---CTGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       637435 38 -   2910086 CATATTCATGTCCC-TTGTAAGGTCAGCACACATC---CTGC
i cebCap1.NW_016107610v1    C 0 I 190
s aotNan1.NW_018505940v1     40665534 38 +  42888418 CATATTCATGTCCC-TTGTAAGGTCAGCACACATC---CTGC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             650615 38 -  36342412 CATACCTAAGTCCC-ATGTAAGATCAGCTCACATC---CTAC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54427450 38 +  91889043 TATACCCAAGTCCC-ATGTAAGGTCAGCACACTCT---CTCT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1822743 41 +   3943991 CATATCCAAGTCCC-ATGTAAGCTCAAAGCACGCCAATCTGT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113288948 198 + 116334831 I
e proCoq1.NW_012142813v1        34068 230 +     80520 I
e mm10.chr7                  81368424  1 + 145441459 I

a score=196365.000000
s hg38.chr15_KI270850v1_alt    355802 25 +    430880 CCCTGTCACT-AACCA------CCT--CAACTTC-
s panTro5.chr15              63509201 25 +  83230942 CCCTGTCACT-AACCA------CCT--CAACTTC-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466294 25 +  99763055 CCCTGTCACT-AACCA------CCT--CAACTTC-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66477 25 -   1709092 CCGTGTCACT-AACCA------CCT--CAACTTC-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17225917 25 - 121039945 CCCTGTCACT-AACCA------CCT--CAACTTC-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60906667 25 + 169600520 CCCTGTTACT-AACCA------CCT--CAACTTC-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433407 25 - 171882078 CCCTGTTACT-AACCA------CCT--CAACTTC-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44140 25 -   2311642 CCCTGTTACT-AACCA------CCT--CAACTTC-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42330 25 -   1987038 CCCTGTTACT-AACCA------CCT--CAACTTC-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21122581 25 -  24206276 CCCTGTTACT-AACCA------CCT--CAACTTC-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        37743 25 -   1397330 CCCTGTTACT-AACCA------CCT--CAACTTC-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61223 25 -   1784207 CCCTGTTACT-AACCA------CCT--CAACTTC-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22263595 31 + 158406734 CCCTGTTACC-AATCAACCCCCTCA--CAACCTC-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50494489 32 +  54856640 CCCTGTTACCAAATCAAGCCCCTGT--CAATCTC-
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40665572 31 +  42888418 CCCTGTTACC-AATCAACCGCTGCT--CAACCTC-
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             650653 27 -  36342412 CCATATTCCC-AACCA------CCTCACAACTTC-
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54427488 12 +  91889043 -------CCT-ACCCA------TTT--C-------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1822784 26 +   3943991 GCCTGTACCC-AACTA------TCT--CCAACTCC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113288948 198 + 116334831 I
e proCoq1.NW_012142813v1        34068 230 +     80520 I
e mm10.chr7                  81368424  1 + 145441459 I
e cebCap1.NW_016107610v1       637473 190 -   2910086 I

a score=234492.000000
s hg38.chr15_KI270850v1_alt    355827 27 +    430880 TTTCTCACCTAGGAGGC-CT-CCCTGGCC
s panTro5.chr15              63509226 27 +  83230942 TTTCTCACCTAGGAGGC-CT-CCCTGGCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466319 27 +  99763055 TTTCTCACCTAGGAGGC-CT-CCCTGGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66502 27 -   1709092 TTTCTCACCTAGGAGGC-CT-CCCTGGCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17225942 14 - 121039945 TTTCTCA---------------TCTGGCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60906692 27 + 169600520 TTTCTCACCTAGGAGTC-CT-CCCTGGCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433432 27 - 171882078 TTTCTCACCTAGGAGTC-CT-CCCTGGCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44165 27 -   2311642 TTTCTCACCTAGGAGTC-CT-CCCTGGCC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42355 27 -   1987038 TTTCTCACCTAGGAGTC-CT-CCCTGGCC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21122606 28 -  24206276 TTTCTCACCTAGGAGTC-CTCCCCTGGCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        37768 27 -   1397330 TTTCTCACCTAGGAGTC-CT-CCCTGGCC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61248 27 -   1784207 TTTCTCACCTAGGAGTC-CT-CCCTGGCC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22263626 27 + 158406734 TTTCTCACATTGGAGGC-CT-CCCTGGTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50494521 27 +  54856640 TTTCTCACATTGGAGGC-CT-CTCTAGCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       637663 27 -   2910086 TTTCTCACATTGGAGGC-CT-CCCTGGCC
i cebCap1.NW_016107610v1    I 190 C 0
s aotNan1.NW_018505940v1     40665603 27 +  42888418 TTTCTCACATTGGAGGC-CT-CCCTGGCC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             650680 18 -  36342412 TCTCTCACGTAGAATGC-C----------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54427500 17 +  91889043 TTTCTCACCTAGGAGGC------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1822810 28 +   3943991 TTTCTCATCTGTAAGGCACC-CCATTATC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113288948 198 + 116334831 I
e proCoq1.NW_012142813v1        34068 230 +     80520 I
e mm10.chr7                  81368424  1 + 145441459 I

a score=886881.000000
s hg38.chr15_KI270850v1_alt    355854 67 +    430880 ACACTGCTT-CCCAGGTTCTCCCTCCTCTC-TGCACTGAAAGC-T-TTCCC--AAATAGACTACTTGACTCCA
s panTro5.chr15              63509253 67 +  83230942 ACACTGCTT-CCCAGGTTCTCCCTCCTCTC-TGCACTAAAAGC-T-TTCCC--AAATAGACTACTTGAGTCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466346 67 +  99763055 ACACTGCTT-CCCAGGTTCTCCCTCCTCTC-TGCACTAAAAGC-T-TTCCC--AAATAGACTACTTGAGTCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66529 67 -   1709092 ACACTGCTT-CCCAGGTTCTCCCTCCTCTC-TGCACTGAAAGC-T-TTCCC--AAATAGACTACTTGACTCCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17225956 67 - 121039945 ACACTGCTT-CCCAGGTTCTCCCTCCTCTC-TGCATTGAAAGC-T-TTCCC--AAATAGACTACTTGACTCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60906719 65 + 169600520 ACACTGCTT-CCCAGGTTCTCCCTC--CTC-TGCACTGAAAGC-T-TTCCC--AAATAGACTACTTGACTCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433459 65 - 171882078 ACACTGCTT-CCCAGGTTCTCCCTC--CTC-TGCACTGAAAGC-T-TTCCC--AAATAGACTACTTGACTCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44192 65 -   2311642 ACATTGCTT-CCCAGGTTCTCCCTC--CTC-TGCACTGAAAGC-T-TTCCC--AAATAGACTACTTGACTCCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42382 65 -   1987038 ACACTGCTT-CCCAGGTTCTCCCTC--CTC-TGCACTGAAAGC-T-TTCCC--AAATAGACTACTTGACTCCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21122634 65 -  24206276 ACACTGCTT-CCCAGGTTCTCTCTC--CTC-TGCACTGAAAGC-T-TTCCC--AAATAGACTACTTGACTCCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        37795 66 -   1397330 ACACTGCTTCCCCAGGTTCTCCCTC--CTC-TGCACTGAAAGC-T-TTCCC--AAATAGACTACTTGACTCCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61275 67 -   1784207 ACACTGCTT-CCCAGGTTCTCCCTCCTCTC-TGCACTGAAAGC-T-TTCCC--AAATAGACTACTTGACTCCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22263653 67 + 158406734 ACACTGCTT-CTGAGGTCCTCCCTCCTCAC-TGCACCAAAAGC-T-TTCCC--AAACAGACTACTTGACTCCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50494548 63 +  54856640 ACACTGCTT-CTGAGGTCCTCCCTCCTCTC-TGCACCGAAAGC-T-TTCC------CAGACTACTTGACTCCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       637690 67 -   2910086 ACACTGCTT-CAGAGGTCCTCCCTCCTCTC-TGCACCAAAAGC-T-TTCCC--AAACAGACTACTTGACTCCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40665630 59 +  42888418 ACACTGCTT-CTGAGGTCCTCCCTCCTCTC-TGCACCAAAAGC-T-TTCCC--AAACAGACTACT--------
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113289146 68 + 116334831 ACACTGCTC-CCCAGGTTCTCTATCATCTC-TGCACTGAAAGTGG-TCCCC--AAATACACTACTTGACTCCA
i micMur3.chr9              I 198 I 83
s otoGar3.GL873530             650698 68 -  36342412 ACACTGCTT-CCAAGGTTCTCTCTCCTCTC-TGCACTAAAAGCGG-CTCCC--AAATACACTACTTGACTTCA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54427517 69 +  91889043 ACCCTGCTT-CCCCGGCCCTCCCTCCTCTCTTGCATTGAAAGC-TATTCCT--CAGCAGACTACCTGACCCCG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1822838 69 +   3943991 ACACTGCTT-CCCTGGTTCTCCCTCCTCTC-TGCAGTGAAAGC-T-GTTCCTAGAATAGACTACTGGATTCCA
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        34068 230 +     80520 I
e mm10.chr7                  81368424  1 + 145441459 I

a score=972948.000000
s hg38.chr15_KI270850v1_alt    355921 81 +    430880 CAATACAGCTCATGCTCCACTGTATGATGAAAACTTTGTATAATTACATCACCGTCCCCTAGAAGCTAC--AGGGCCCAAGAT
s panTro5.chr15              63509320 81 +  83230942 CAATACAGCTCATGCTCCACTGTATGATGAAAACTTTGTATAATTACATCACCGTCCCCTAGAAGTTAC--AGGGCCCAAGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466413 81 +  99763055 CAATACAGCTCATGCTCCACTGTATGATGAAAACTTTGTATAATTACATCACCGTCCCCTAGAAGTTAC--AGGGCCCAAGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66596 81 -   1709092 CAATACAGCTCATGCTCCACTGTATGATGAAAACTTTGTATAAGTACATCACCGTCCCCTAGAAGCTAC--AGGGCCCAAGAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226023 81 - 121039945 CAATAGAGCTCATGCTCCACTGTATGATGAAAACTTTGTATAAGTACATCACCGTCCCCTAGAAGTTAC--AGGGCCCAAGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60906784 81 + 169600520 CGATAGAGCTCATCCTCCACTGTATGATGAAAACTTTGTATAAGTACATCACCATCCCCTAGAAGCTAC--AGGGTCCAAGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433524 81 - 171882078 CGATAGAGCTCATCCTCCACTGTATGATGAAAACTTTGTATAAGTACATCACCATCCCCTAGAAGCTAC--AGGGTCTAAGAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44257 81 -   2311642 CGATAGAGCTCATCCTCCACTGTATGATGAAAACTTTGTATAAGTACATCACCATCCCCTAGAAGCTAC--AGGGTCCAAGAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42447 81 -   1987038 CAATAGAGCTCATCCTCCACTGTATGATGAAAACTTTGTATAAGTACATCACCATCCCCTAGAAGCTAC--AGGGTCCAAAAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21122699 78 -  24206276 CAATAGAGCTCATCCTCCACTGTATGATGAAAACTTTGTAC---TACATCACCATCCCCTAGAAGCTAC--AGGGTCCAAGAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        37861 81 -   1397330 CGATAGAGCTCATCCTCCACTGTATGATGAAAACTTTGTATAAGTACATCACCATCCCCTAGAAGCTAC--AGGATCCAAAAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61342 81 -   1784207 CGATAGAGCTCATCCTTCACTGTATGATGAAAACTTTGTATAAGTACATCACCGTCCCCTAGAAGCTAC--AGGGTCCAAGAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22263720 81 + 158406734 CAATAGAACTCATGCTCCACTGTATGATGAATACTTTGTATAAATAAATCACCATGCCCTAGAAGCTAC--AGGGCCCAAGAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50494611 81 +  54856640 CAATAGAACTCATGCTCCACTGTATGATGAAAACTTTGTATAAATACATTGCCATGCCCTAGAAGTTAC--AGGGCCCAAGAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       637757 81 -   2910086 CAACAGAACTCATGCTCCACTGTATGATGAAAACTTTGTATAAATACATCGCCATGCCCTAGAAGCTAC--AGGGCCCAAGAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40665689 77 +  42888418 ----AGAACTCATGCTCCACTGTATGATGAAAACTTTGTATAAATACATCACCATGCCCTAGAAGCTAC--AGGGCCCAAGAT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             650766 81 -  36342412 GGACAGAAATCTGGCTTCAGTGTATGATGAAAACTTTCTGTAAGTGCATCGTCTCACCCCAGAAGCTGT--GGGGCCCAGAGA
i otoGar3.GL873530          C 0 I 1
s canFam3.chr3               54427586 82 +  91889043 TGATAGAATTCATGTTCCAGTGTATGAC-AAAATTTTCTGTAAATGCATCTTCATGCCGTAGAAGCTATGGAGGTTCAGAGAT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1822907 78 +   3943991 TGATAGGACTCATGTTCCAGTGTATGATAAAAAC--TATATAAATGCATCAGCATGCCCTAG-AGCTAT--AGGGGCCCAGAT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113289214 83 + 116334831 I
e proCoq1.NW_012142813v1        34068 230 +     80520 I
e mm10.chr7                  81368424  1 + 145441459 I

a score=1281787.000000
s hg38.chr15_KI270850v1_alt    356002 89 +    430880 --ACTGATCTTTG--AAGAATC-TGTCCATCC-AGCTAAATCAACACAAGCAGGAGGCAGAAGAATGGGAGAGACCTTGTCTGAACTCTGCAGTT
s panTro5.chr15              63509401 89 +  83230942 --ACTGATCTTTG--AAGAATC-TGTCCATCC-AGCTAAATCAACACAAGCAGGAGGCAGAAGGATGGGAGAGACCTTGTCTGAACTCTGCAGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466494 89 +  99763055 --ACTGATCTTTG--AAGAATC-TGTCCATCC-AGCTAAATCAACACAAGCAGGAGGCAGAAGGATGGGAGAGACCTTGTCTGAACTCTGCAGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66677 89 -   1709092 --ACTGATCTTTG--AAGAATC-TGTCCATCC-AGCTAAATCAACACAAGCAGGAGGCAGAAGAATGGGAGAGACCTTGTCTGAACTCTGCAGTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226104 89 - 121039945 --ACTGATCTTTG--AAGAATC-TGTCCATCC-AGCTAAATCAACACAAGCAGGAGGCAGAAGAATAGGAGAGACCTTGTCTGAACTCTGCAGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60906865 89 + 169600520 --ACTGATCTTTG--AAAAATT-TGTCCATCC-AACTATATCAACACAAGCGGGAGGCAGAAGAATGGGAAAGACCTTGTCTGAACTCTGCAGTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433605 89 - 171882078 --ACTGATCTTTG--AAAAATT-TGTCCATCC-AACTATATCAACACAAGCGGGAGGCAGAAGAATGGGAAAGACCTTGTCTGAACTCTGCAGTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44338 89 -   2311642 --ACTGATCTTTG--AAAAATT-TGTCCATCC-AACTATATCAACACAAGCGGGAGGCAGAAGAATGGGAAAGACCTTGTCTGAACTCTGCAGTG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42528 89 -   1987038 --ACTGATCTTTG--AAAAATT-TGTCCATCC-AACTATATCAACACAAGCGGGAGGCAGAAGAATGGGAGAGACCTTGTCTGAACTCTGCAGTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21122777 89 -  24206276 --ACTGATCTTTG--AAAAATT-TGTCCATCC-AACTATATCAACACAAGCGGGAGGCAGAAGAATGGGAGAGACCTTGTCTGAACTCTGCAGTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        37942 89 -   1397330 --ACTGATCTTTG--AAAAATT-TGTCCATCC-AACTATATCAACACAAGCGGGAGGCAGAAGAATGGGAGAGACCTTGTCTGAACTCTGCAGTG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61423 88 -   1784207 --ACTGATCTTTG--AAAAATT-TGTCCATCC-AACTGTATCAACACAAGC-GGAGGCAGAAGAATGGGAGAGACCTTGTCTGAACTCTGCAGTG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22263801 87 + 158406734 --ACTGATCTTTG--AAGAATCTTGTCCATCC-AGCTAAATCAACACAAGCAGGAGGCAG---AATAGGAGAGACCTCGTCTGAAATCTGCAGTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50494692 87 +  54856640 --ACTGATCTTTG--AAGAATC-TGTCCATCT-AGCTAAATCAACACAAGCAGGAGGCAGAATAATAGGAGAGACCTTGTCTG--ATCTGCAGTT
i saiBol1.JH378108          C 0 I 472
s cebCap1.NW_016107610v1       637838 89 -   2910086 --ACTCATCTTTG--AAGAATC-TGTCCATCC-AGCTAAATCAACACAAGCAGGAGGGAGAAGAATAGGAGAGACCTTGTCTGAAATCTGCAGTT
i cebCap1.NW_016107610v1    C 0 I 348
s aotNan1.NW_018505940v1     40665766 89 +  42888418 --ACTGATCTTTG--AAGAATC-TGTCCATCC-AGCTAAATCAACACAAGCAGGACGCAGAAGAATAGGAGAGACCTTGTCTGAAATCTGCAGTT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113289297 88 + 116334831 --ACTGATCTTTG--AAGAATC-TGTCCATCC-AGCTA-ATCAATACGAGTAGGAGGCAAAAGAATAGGAAAAACCTTGTCTGAACTGTGCAGTT
i micMur3.chr9              I 83 C 0
s proCoq1.NW_012142813v1        34298 88 +     80520 --ACTGATCTTTG--AAGAATC-TGTCCATCC-AGCCA-ATCAATACGAGTAGGAGGCGAAAGAATAGGAGAGACCTTGTCTGAATTGTGCAGTT
i proCoq1.NW_012142813v1    I 230 C 0
s otoGar3.GL873530             650848 53 -  36342412 --ACTGATCTTTG--AAGAATC-TGTCCATCCAAGCTG-ATCA------------------------------------CCTTAACTCTGCAGTT
i otoGar3.GL873530          I 1 C 0
s canFam3.chr3               54427668 90 +  91889043 --ACTGATTTTTGAAAAAAATC-TATCCATCC-AGCTG-ACCATAACAAGTAGGAGGCAGAAGAATGGGAGAGACCTTGACCATATTCTACAGTT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1822985 77 +   3943991 ATACTGATCCTTG--AAGAATC-TGTCCATCC-AGTTG-ATTAGCACAAGTAGGAGG-------------GAGACTTTGTCTGAACTCTGTATTT
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81368424  1 + 145441459 I

a score=85537.000000
s hg38.chr15_KI270850v1_alt    356091 6 +    430880 -AAAAAA
s panTro5.chr15              63509490 6 +  83230942 -AAAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466583 6 +  99763055 -AAAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66766 6 -   1709092 -AAAAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226193 6 - 121039945 -AAAAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60906954 6 + 169600520 -AAAAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433694 6 - 171882078 -AAAAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44427 6 -   2311642 -AAAAAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42617 6 -   1987038 -AAAAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21122866 6 -  24206276 -AAAAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        38031 6 -   1397330 -AAAAAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61511 6 -   1784207 -AAAAAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22263888 6 + 158406734 -AAAAAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495251 6 +  54856640 -aaaAAA
i saiBol1.JH378108          I 472 C 0
s cebCap1.NW_016107610v1       638275 6 -   2910086 -aaaaaa
i cebCap1.NW_016107610v1    I 348 C 0
s aotNan1.NW_018505940v1     40665855 6 +  42888418 -AAAAAA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113289385 6 + 116334831 -ATAAAA
i micMur3.chr9              C 0 I 41
s proCoq1.NW_012142813v1        34386 6 +     80520 -AAAAAA
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             650901 6 -  36342412 -AAAAAA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54427758 5 +  91889043 --CAAAA
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1823062 6 +   3943991 TAAAAA-
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81368424 1 + 145441459 I

a score=31483.000000
s hg38.chr15_KI270850v1_alt    356097 2 +    430880 CA
s panTro5.chr15              63509496 2 +  83230942 CA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466589 2 +  99763055 CA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66772 2 -   1709092 CA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226199 2 - 121039945 CG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60906960 2 + 169600520 CA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433700 2 - 171882078 CA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44433 2 -   2311642 CA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42623 2 -   1987038 CA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21122872 2 -  24206276 CA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        38037 2 -   1397330 CA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61517 2 -   1784207 CA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22263894 2 + 158406734 CA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495257 2 +  54856640 CA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638281 2 -   2910086 CA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40665861 2 +  42888418 CA
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        34392 2 +     80520 CA
i proCoq1.NW_012142813v1    C 0 I 141
s otoGar3.GL873530             650907 2 -  36342412 CA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54427764 2 +  91889043 TA
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1823068 2 +   3943991 CA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113289391 41 + 116334831 I
e mm10.chr7                  81368424 1 + 145441459 I

a score=256512.000000
s hg38.chr15_KI270850v1_alt    356099 21 +    430880 ACCAGGA-TAAA---CACAGTGGCT
s panTro5.chr15              63509498 21 +  83230942 ACCAGGA-TAAA---CACAGTGGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466591 21 +  99763055 ACCAGGA-TAAA---CACAGTGGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66774 21 -   1709092 CCCAGGA-TAAA---CACAGTGGCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226201 21 - 121039945 CCCAGGA-TAAA---CACAGTGGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60906962 22 + 169600520 CCCAGGATTAAA---CACAGTGGCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433702 22 - 171882078 CCCAGGATTAAA---CACAGTGGCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44435 22 -   2311642 CCCAGGATTAAA---CACAGTGGCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42625 22 -   1987038 CCCAGGATTAAA---CACAGTGGCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21122874 22 -  24206276 CCCAGGATTAAA---CACAGTGGCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        38039 22 -   1397330 CCCAGGATTAAA---CACAGTGGCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61519 22 -   1784207 CCCAGGATTAAA---CACACTGGCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22263896 21 + 158406734 CCCAGGA-TAAA---CACAGTGGCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495259 21 +  54856640 CCCAGGA-TAAA---CACACTGGCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638283 21 -   2910086 CCCAGGA-TAAA---CACAGTGGCT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40665863 21 +  42888418 CCCAGTA-TAAA---CACAGTGGCT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             650909 21 -  36342412 CTCAGGA-CTCA---CACTGTGGCT
i otoGar3.GL873530          C 0 I 19
s canFam3.chr3               54427766 24 +  91889043 CCCAGGA-TTAACACCACAGTGGCT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1823070 21 +   3943991 CCCAGGA-TTAA---CACAGTGGCT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113289391 41 + 116334831 I
e proCoq1.NW_012142813v1        34394 141 +     80520 I
e mm10.chr7                  81368424  1 + 145441459 I

a score=380094.000000
s hg38.chr15_KI270850v1_alt    356120 26 +    430880 CAGCACTCAtcattcattc-aaaaaat
s panTro5.chr15              63509519 26 +  83230942 CAGCACTCAtcattcattc-aaaaaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466612 26 +  99763055 CAGCACTCAtcattcattc-aaaaaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66795 26 -   1709092 CAGCACTCAtcattcattc-aaaaaat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226222 26 - 121039945 CAGCACTCAtcattcattc-aaaaaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60906984 26 + 169600520 CAGCACTCAtcactcattc-aaaaaat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433724 26 - 171882078 CAGCACTCAtcactcattc-aaaaaat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44457 26 -   2311642 CAGCACTCAtcactcattc-aaaaaat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42647 26 -   1987038 CAGCACTCAtcactcattc-aaaaaat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21122896 26 -  24206276 CAGCACTCAtcactcattc-aaaaaat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        38061 26 -   1397330 CAGCACTCAtcactcattc-aaaaaat
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61541 25 -   1784207 CAGCAC-CAtcactcattc-aaaaaat
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22263917 26 + 158406734 CTGCACTCAtcattcattc-aaaaaac
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495280 26 +  54856640 CAGCACTCAtcattcattc-aaaaaat
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638304 26 -   2910086 CAGCACTCAtcattcattc-aaaaaat
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40665884 27 +  42888418 CAGCACTCAtcattcattcaaaaaaat
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113289432 26 + 116334831 CAGCACTCAtcattcattc-aacaaat
i micMur3.chr9              I 41 C 0
s otoGar3.GL873530             650949 21 -  36342412 TGGCACTCATCA-----TC-AACAAAT
i otoGar3.GL873530          I 19 C 0
s canFam3.chr3               54427790 26 +  91889043 CAGCATTCATCGTTCATTC-AATAGAT
i canFam3.chr3              C 0 I 162
s dasNov3.JH570731            1823091 26 +   3943991 CAGCAATCAtcattcattc-aacaaat
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        34394 141 +     80520 I
e mm10.chr7                  81368424  1 + 145441459 I

a score=71006.000000
s hg38.chr15_KI270850v1_alt    356146 5 +    430880 atgta
s panTro5.chr15              63509545 5 +  83230942 atgta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466638 5 +  99763055 atgta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66821 5 -   1709092 atgta
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226248 5 - 121039945 atgta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907010 5 + 169600520 atgta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433750 5 - 171882078 atgta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44483 5 -   2311642 atgta
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42673 5 -   1987038 atgta
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21122922 5 -  24206276 atgta
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        38087 5 -   1397330 atgta
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61566 5 -   1784207 atgta
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22263943 5 + 158406734 atgta
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495306 5 +  54856640 acgta
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638330 5 -   2910086 atgta
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40665911 5 +  42888418 atgta
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113289458 5 + 116334831 attta
i micMur3.chr9              C 0 C 0
s otoGar3.GL873530             650970 5 -  36342412 ATTTA
i otoGar3.GL873530          C 0 I 301
s canFam3.chr3               54427978 5 +  91889043 atgga
i canFam3.chr3              I 162 C 0
s dasNov3.JH570731            1823117 5 +   3943991 attta
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        34394 141 +     80520 I
e mm10.chr7                  81368424 1 + 145441459 I

a score=580871.000000
s hg38.chr15_KI270850v1_alt    356151  57 +    430880 tta----------------------------------------------gacagccattagccaagcactgttgtac-tgctgggaatatagtattggagaaCT
s panTro5.chr15              63509550  57 +  83230942 tta----------------------------------------------gacagccattagccaagcactgttgtac-tgctgggaatacagtattggagaaCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466643  57 +  99763055 tta----------------------------------------------gacagccattagccaagcactgttgtac-tgctgggaatacagtattggagaaCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66826  57 -   1709092 tta----------------------------------------------gacagccattagccaagcactgttgtac-tgctgggaatacagtagtggagaaCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226253  53 - 121039945 tt--------------------------------------------------agccattagtcaagcactgttcttc-tgctgggaatacagcagtggagaaCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907015  53 + 169600520 tt--------------------------------------------------agccattagccaagcactattctac-tgctgggaatacagtagtggagaaCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433755  53 - 171882078 tt--------------------------------------------------agccattagccaagcactattctac-tgctgggaatacagtagtggagaaCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44488  53 -   2311642 tt--------------------------------------------------agccattagccaagcactattctac-tgctgggaatacagtagtggagaaCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42678  53 -   1987038 tt--------------------------------------------------agccattagccaagcactattctac-tgctgggaatacagtagtggagaaCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21122927  53 -  24206276 tt--------------------------------------------------agccattagccaagcactattctac-tgctgggaatacagtagtggagaaCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        38092  53 -   1397330 tt--------------------------------------------------agccattagccaagcactattctac-tgctgggaatacagtagtggagaaCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61571  53 -   1784207 tt--------------------------------------------------agccattagccaagcactattctac-tgctggaaatacagtagtggagaaTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22263948  53 + 158406734 tt--------------------------------------------------agccattaaccaggcactgttttac-tgctgggaacacagtagtggaaaaCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495311  53 +  54856640 tt--------------------------------------------------atccattaaccaggcactgttctac-tgctgggaatacagtaatggaaaaTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638335  53 -   2910086 tt--------------------------------------------------agccattaaccaggcactgttctac-tgctgggaatacagtagtggaaaaTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40665916  53 +  42888418 tt--------------------------------------------------agccattaaccaggcactgttctac-tgctgggaatatagtagtggacaaGT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113289463  57 + 116334831 --tg--------------------------------------------aaatggccattaggcaggcaccgtgctac-tgctgggtatgtaacagtagagaaCT
i micMur3.chr9              C 0 C 0
s otoGar3.GL873530             651276  53 -  36342412 --TC--------------------------------------------AGACAGCCA----GTGGGCACTGTGTTAT-TGCTGAGAATACAATAGTGGAGAATT
i otoGar3.GL873530          I 301 C 0
s canFam3.chr3               54427983 101 +  91889043 ---taaaatctttaaaaaaaaaaaaaaaaaaaaaaaaaGGTTCCTTATAAAAAGCCACGAgccaggcactgtgctacatgctggggatagaatagtgatgaact
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1823122  59 +   3943991 ---------------------------------------------ttaaaccaccaatgagccaggcactgtgctacatgtggggaatacagtagGGGAAACCT
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        34394 141 +     80520 I
e mm10.chr7                  81368424   1 + 145441459 I

a score=162199.000000
s hg38.chr15_KI270850v1_alt    356208 14 +    430880 -GGGAGTTGAGGAAG
s panTro5.chr15              63509607 14 +  83230942 -GGGAGTTGAGGAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466700 14 +  99763055 -GGGAGTTGAGGAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66883 14 -   1709092 -GGGAGTTGAGGAAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226306 14 - 121039945 -GGGAGTTGAGGAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907068 14 + 169600520 -GGGAGTTGAGGAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433808 14 - 171882078 -GGGAGTTGAGGAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44541 14 -   2311642 -GGGAGTTGAGGAAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42731 14 -   1987038 -GGGAGTTGAGGAAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21122980 14 -  24206276 -GGGAGTTGAGGAAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        38145 14 -   1397330 -GGGAGTTGAGGAAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61624 14 -   1784207 -GGGAGTTGAGGAAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22264001 13 + 158406734 -GGGATTTGAGACA-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495364 13 +  54856640 -GGGAGTTGAGGCA-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638388 13 -   2910086 -GGGAGTTGAGGCA-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40665969 13 +  42888418 -GGGAGTTGAGGCA-
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113289520 14 + 116334831 -GCGAGTTGAAGCCT
i micMur3.chr9              C 0 C 0
s otoGar3.GL873530             651329 14 -  36342412 -GGAAGTTGAAGCAG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81368425 14 + 145441459 -GAGAGTTGAAGCAA
i mm10.chr7                 I 1 C 0
s canFam3.chr3               54428085 14 +  91889043 -gataaCTGAGTTAG
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1823181 15 +   3943991 GGGCAGTCTAGGTAG
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        34394 141 +     80520 I

a score=798714.000000
s hg38.chr15_KI270850v1_alt    356222 53 +    430880 ATTTACAAGAGACC--TGGTTGGGCCGAGGAAGTCCATGTTCCACATAAGAGAGA
s panTro5.chr15              63509621 53 +  83230942 ATTTACAAGAGACC--TGGTTGGGCCGAGGAAGTCCATGTTCCACATGAGAGAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466714 53 +  99763055 ATTTACAAGAGACC--TGGTTGGGCCGAGGAAGTCCATGTTCCACATGAGAGAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66897 54 -   1709092 ATTTACAAGAGACC-TTGGTTGGGCCGAGGAAGTCCATGTTCCACATAAGAGAGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226320 54 - 121039945 ATTTACAAGAGACC-TTGGCTGGGCCGAGGAAGTCCATGTTCCACATAAGAGAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907082 55 + 169600520 ATTTACAAGACACCTTTGGTTGGACCGAGGAAGTCCATGTTCCACACAGGAGAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433822 55 - 171882078 ATTTACAAGACACCTTTGGTTGGACCGAGGAAGTCCATGTTCCACACAGGAGAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44555 55 -   2311642 ATTTACAAGACACCTTTGGTTGGACCGAGGAAGTCCATGTTCCACACAGGAGAAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42745 55 -   1987038 ATTTACAAGACACCTTTGGTTGGACCGAGGAAGTCCATGTTCCACACAGGAGAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21122994 55 -  24206276 ATTTACAAGACACCTTTGGTTGGACCGAGGAAGTCCATGTTCCACACAGGAGAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        38159 55 -   1397330 ATTTACAAGACACCTTTGGTTGGACGTAGGAAGTCCATGTTCCACACAGGAGAAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61638 54 -   1784207 ATTTACAAGACACC-TTGGTTGGGCCGAGGAAGTCCATGTTCCACACAGGAGAAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22264014 54 + 158406734 ATTTGCAAGAGACC-TTGATTGGGCTGAGGAAGTCCATGTTCTACATAGGACAGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495377 54 +  54856640 ATTTGTAAGAGACG-TTGGTTGGGCTGAGGAAGTCCATGTTCTACACAGGACAGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638401 54 -   2910086 ATTTGCAAGAGACC-CTGGTTGGGCTGAGGAAGTCCATGTTCTACACAGGACAGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40665982 54 +  42888418 ATTTGCAAGAGGCC-TTGGTTGGGCTGAGGAAGTCCATGTTCTACATAGGACAGA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113289534 54 + 116334831 ATTTGCAGGAGACC-GTGGTTGGGCCCAGGAAGTCCATATTCCACACAAGAGAGA
i micMur3.chr9              C 0 I 102
s proCoq1.NW_012142813v1        34535 54 +     80520 ATTTGCAAGAGACC-GTGGTTGGGCCCAGGAAGTCCATATTCCACACAACAGAGA
i proCoq1.NW_012142813v1    I 141 C 0
s otoGar3.GL873530             651343 54 -  36342412 ATTTGCCAGAGACT-TTGGTTGGGCCTACGAAGTCCATATTCCACACAGGAGAGA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81368439 54 + 145441459 ATCTGCAAGAAAAC-TTAGTTGTGCCCTGGACATCCATATTCCATATTGGAGAAG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54428099 47 +  91889043 ATTTGCAGAA---C-----TTAGGCCCAGGAAATCCATGTTCTACAGAAGAGGAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1823196 54 +   3943991 ACTTGCATGAGATC-TTGGTTGGGTCCAGGAAGTTCATGTACCACATAAGATGGA
i dasNov3.JH570731          C 0 C 0

a score=270692.000000
s hg38.chr15_KI270850v1_alt    356275 17 +    430880 CCTAATCCCGTTCTGAA
s panTro5.chr15              63509674 17 +  83230942 CCTAATCCCGTTCTGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466767 17 +  99763055 CCTAATCCCGTTCTGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66951 17 -   1709092 CCTAATCCCGTTCTGAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226374 17 - 121039945 CCTAATCCCGTTCTGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907137 17 + 169600520 CCTAACCCCGTTCTGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433877 17 - 171882078 CCTAACCCCGTTCTGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44610 17 -   2311642 CCTAACCCCGTTCTGAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42800 17 -   1987038 CCTAACCCCGTTCTGAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21123049 17 -  24206276 CCTAACCCTGTTCTGAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        38214 17 -   1397330 CCTAACCCCGTTCTGAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61692 17 -   1784207 CCTAACCCCGTTCTGAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22264068 17 + 158406734 CCTAATCCCGTTCTGAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495431 17 +  54856640 CCTAATCCCGTTCTGAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638455 17 -   2910086 CCTAATCCCATTCTGAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666036 17 +  42888418 CCTAATCCTGTTCTGAA
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        34589 17 +     80520 TCCAATCCTATTCTGAA
i proCoq1.NW_012142813v1    C 0 I 84
s otoGar3.GL873530             651397 17 -  36342412 TCCAATCCTGTTCTGAA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81368493 17 + 145441459 CCTAAACCTATTTTGAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54428146 17 +  91889043 TACAACTCTGTTCTGAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1823250 17 +   3943991 CTCAATCCTATTCTGAA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113289588 102 + 116334831 I

a score=770547.000000
s hg38.chr15_KI270850v1_alt    356292  70 +    430880 TGTCGCCTCAGAATGGTTGTTTGGAA--GA-----AGCT---------------TCAGATG----------------AAAATTGCTTAAG----------ACTCCCCACTC---ATCTTAG
s panTro5.chr15              63509691  70 +  83230942 TGTCGCCTCAGAATGGTTGTTTGGAA--GA-----AGCT---------------TCAGATG----------------AAAATTGCTTAAG----------ACTCCCCACTC---ATCTTAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466784  70 +  99763055 TGTCGCCTCAGAATGGTTGTTTGGAA--GA-----TGCT---------------TCAGATG----------------AAAATTGCTTAAG----------ACTCCCCACTC---ATCTTAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        66968  70 -   1709092 TGTCGCCTCAGAATGATTGTTTGGAA--GA-----AGCT---------------TCAGATG----------------AAAATTGCTTAAG----------ACTCCCCACTC---ATCTTAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226391  70 - 121039945 TGTTGCCTCAGAATGGTTGTTTGGAA--TA-----AGCT---------------TCAGTGG----------------AAAATTGCTTAAG----------ACTCCCCACTC---ATCTTAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907154  70 + 169600520 AGTCACCTCAGAATGGTTGTTTGGAA--GA-----AGCT---------------TCAGATG----------------AAAATTGCTGAAG----------ACTCCCGGCTC---ATCTTAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433894  70 - 171882078 AGTCACCTCAGAATGGTTGTTTGGAA--GA-----AGCT---------------TCAGATG----------------AAAATTGCTGAAG----------ACTCCCGGCTC---ATCTTAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44627  70 -   2311642 AGTCACCTCAGAATGGTTGTTTGGAA--GA-----AGCT---------------TCAGATG----------------AAAATTGCTGAAG----------ACTCCCGGCTC---ATCTTAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42817  70 -   1987038 AGTTGCCCCAGAATGGTTGTTTGGAA--GA-----AGCT---------------TCAGATG----------------AAAATTGCTGAAG----------ACTCCCGGCTC---ATCTTAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21123066  70 -  24206276 AGTCGCCTCAGAATGGTTGTTTGGAA--GA-----AGCT---------------TCAGATG----------------AAAATTGCTGAAG----------ACTCCCGGCTC---ATCTTAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        38231  70 -   1397330 AGTCGCCTCAGAATGGTTGTTTGGAA--GA-----AGCT---------------TCAGATG----------------AAAATTGCTGAAG----------ACTCCCGGCTC---ATCTTAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61709  70 -   1784207 TGTCACCTCAGAATGGTTGTTTGGAA--GA-----AGCT---------------TCAGATG----------------AAAACTGCTGAAG----------ACTCCCGGCTC---ATCTTAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22264085  70 + 158406734 TGTCGCCTCAGAATGAGTGTGTGGAA--GA-----AGCT---------------TCAGGTG----------------CAAACTGCTCAAG----------ACTCCCCCCTC---ATCTTAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495448  70 +  54856640 TGTCGCCTCAGAATTAGTGTTTCGAA--GA-----AGCT---------------TCAGGTG----------------CGAACTGCTGAAG----------ACTCCCTCCTC---ATCTTAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638472  70 -   2910086 TGTCACCTCAGAATGAGTGTTTGGAA--GA-----AGCT---------------TCAGGTG----------------CAAACTGCTGAAG----------ACTCCCCCCTC---ATCTTAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666053  70 +  42888418 TGTCGCCTCAGAATGATTGTTTGGAA--GA-----AGCT---------------TCAGGTG----------------CAAACTGCTGAAG----------ACTCCCCCCTC---ATCTTAG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             651414 101 -  36342412 TGCTGCCTCAGAAAGGCTGTTTCTAAATGA-----GGCT---------------GTAAGTACCAAAGCGGCAAAAATCAAAATGCTGAATTCACCACCCCATCCCTGCCTCACTATCCTAA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81368510  66 + 145441459 TGCTGGCTCAT--TAACAGTTTGAAA--AA-----GGTT---------------GGGAAAG----------------CAGA--GCAAAAG----------TCATTTGTATC---ATCCCAG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54428163  75 +  91889043 TGTCACCTCAGAAAGGCTGTTTGGAA--GGACTGCAGTG---------------GCAGAAG----------------CAAAGTACCAAGG----------GCTCCCCTCTC---ATCCCAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1823267  85 +   3943991 CATTGCTTCAGAAAGGCTGTTTAGTA--GA-----GGCTGGAAGTATATCAGCAGCAGAAG----------------CAAAATGCTAAAG----------ACTCCTCTCTC---ATCCCAG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113289588 102 + 116334831 I
e proCoq1.NW_012142813v1        34606  84 +     80520 I

a score=907232.000000
s hg38.chr15_KI270850v1_alt    356362 56 +    430880 GCTGATGTAGCCTGCAGATCAATGGGG-AGCCTGCAAGTGACACAGCACAGG-GAACA
s panTro5.chr15              63509761 56 +  83230942 GCTGATCTAGCCTGCAGATCAATGGGG-AGCCTGCAAGTGACACAGCACAGG-GAACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466854 56 +  99763055 GTTGATCTAGCCTGCAGATCAATGGGG-AGCCTGCAAGTGACACAGCACAGG-GAACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67038 56 -   1709092 GCTGATCTAGCCTGCAGATCAATGGGG-AGCCTGCAAGTGACACAGCACAGG-GAACA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226461 56 - 121039945 GCTGATCTAGCCTGCAGATCAATGGGG-AGCCTGCAAGTGACACAGCACAGG-GAACA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907224 57 + 169600520 GCTGATCTAGCCTGCAGATCAGTGGGG-AGCCTGCAAGTGACACAGCACAGGAAAACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108433964 57 - 171882078 GCTGATCTAGCCTGCAGATCAGTGGGG-AGCCTGCAAGTGACACAGCACAGGAAAACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44697 57 -   2311642 GCTGATCTAGCCTGCAGATCAGTGGGG-AGCCTGCAAGTGACACAGCACAGGAAAACA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42887 57 -   1987038 GCTGATCTAGCCTGCAGATCAGTGGGG-AGCCTGCAAGTGACACAGCACAGGAAAACA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21123136 57 -  24206276 GCTGATCTAGCCTGCAGATCAATGGGG-AGCCTGCAAGTGACACAGCACAGGAAAACA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        38301 57 -   1397330 GCTGATCTAGCCTGCAGATCAGTGGGG-AGCCTGCAAGTGACACAGCACAGGAAAACA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61779 56 -   1784207 GCTGATCTAGCCTGCAGATCAATGGGG-AGCCTGCAAGTGACACAGCACAGG-AAACA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22264155 56 + 158406734 GCTGACCTAGCTTGCAGACCAATGAGG-AGAGTGCAAGTGACACAGCAAAGG-GAACA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495518 56 +  54856640 GCTGATCTAGCCTGCAGACCAATGGGG-AGAGTGCAAGTGACACAGCAAAGG-GAACA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638542 56 -   2910086 GCTGATCTAGCCTGCAGACCAACGGGG-AGAGTGCAAGTGACAAAGCAAAGG-GAACA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666123 56 +  42888418 GCTGATCTAGCCTGCAGACCAATGGGG-AGAGTGCAAGTGACACAGCAAAGG-GAACA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113289690 55 + 116334831 GCTGATCTAGCCTGCAGACCAA-GGGG-AGTCTGCAAGTGACACAGCACAGG-GAACG
i micMur3.chr9              I 102 C 0
s proCoq1.NW_012142813v1        34690 55 +     80520 GCTGATCTAGCCTGCAGACTAA-GGGG-AATCTGCAAGTGACACAGCACAGG-GAACG
i proCoq1.NW_012142813v1    I 84 C 0
s otoGar3.GL873530             651515 56 -  36342412 GCTGATCTAGCCTACAGACCAAGGGGG-AGCCTACAAGTGATACAACGCAGG-GAACA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81368576 57 + 145441459 GCTGCTCTACCCTATGGATCAATGGGGAAGTCTGCAAATGAAACAGCACAGG-GAACA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54428238 56 +  91889043 GCTGATCCTGCGTGCCCACCAACAGGG-ACCTTGTAAGTAACACAGCATGGG-GAACA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1823352 52 +   3943991 GTTATTTTAACTGGCAGACCAATGGGG-AGCCTGGAAGTG----AGAAAAGA-GAGCA
i dasNov3.JH570731          C 0 I 35

a score=160545.000000
s hg38.chr15_KI270850v1_alt    356418 10 +    430880 TTCCATTC-AC
s panTro5.chr15              63509817 10 +  83230942 TTCCATTC-AC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466910 10 +  99763055 TTCCATTC-AC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67094 10 -   1709092 TTCCATTC-AC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226517 10 - 121039945 TTCCATTA-AC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907281 10 + 169600520 TTCCATTC-AC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108434021 10 - 171882078 TTCCATTC-AC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44754 10 -   2311642 TTCTATTC-AC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42944 10 -   1987038 TTCCATTC-AC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21123193 10 -  24206276 TTCCATTC-AC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        38358 10 -   1397330 TTCCATTC-AC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61835 10 -   1784207 TTCCATTC-AC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22264211 10 + 158406734 TTCCATTC-AC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495574 10 +  54856640 TTCCATTC-AC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638598 10 -   2910086 TTCCATTC-AC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666179 10 +  42888418 TTCCATCC-AC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113289745 10 + 116334831 TTTCATTC-AC
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        34745 10 +     80520 TTTCATTC-AC
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             651571 10 -  36342412 CTTCCTTC-AC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81368633 11 + 145441459 TTACATTCAAC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54428294 10 +  91889043 TTCCATTC-AT
i canFam3.chr3              C 0 C 0
e dasNov3.JH570731            1823404 35 +   3943991 I

a score=105833.000000
s hg38.chr15_KI270850v1_alt    356428 8 +    430880 TGATTAGC
s panTro5.chr15              63509827 8 +  83230942 TGATTAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466920 8 +  99763055 TGATTAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67104 8 -   1709092 TGATTAGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226527 8 - 121039945 TGATTAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907291 8 + 169600520 TGATTAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108434031 8 - 171882078 TGATTAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44764 8 -   2311642 TGATTAGC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42954 8 -   1987038 TGATTAGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21123203 8 -  24206276 TGATTAGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        38368 8 -   1397330 TGATTAGC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61845 8 -   1784207 TGATTAGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22264221 8 + 158406734 TTATTAGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495584 8 +  54856640 TTATTAGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638608 8 -   2910086 TTATTAGC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666189 8 +  42888418 TTATTAGC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113289755 8 + 116334831 TGGGTAGC
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        34755 8 +     80520 TGGGTAGC
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             651581 8 -  36342412 TGGTAAGC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81368644 8 + 145441459 TGGTCAAC
i mm10.chr7                 C 0 C 0
e dasNov3.JH570731            1823404 35 +   3943991 I
e canFam3.chr3               54428304 0 +  91889043 C

a score=242633.000000
s hg38.chr15_KI270850v1_alt    356436 20 +    430880 AGTTAGGGTAGAAAACC-AGA
s panTro5.chr15              63509835 20 +  83230942 AGTTAGGGTAGAAAACC-AGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466928 20 +  99763055 AGTTAGGGTAGAAAACC-AGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67112 20 -   1709092 AGTTAGGGTAGAAAACC-AGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226535 20 - 121039945 AGTTAGGGTAGAAAACC-AGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907299 20 + 169600520 AGTTAGGGTAGAAAACC-AAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108434039 20 - 171882078 AGTTAGGGTAGAAAACC-AAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44772 20 -   2311642 AGTTAGGGTAGAAAACC-AAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42962 20 -   1987038 AGTTAGGGTAGAAAACC-AAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21123211 20 -  24206276 AGTTAGGGTAGAAAACC-AGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        38376 20 -   1397330 AGTTAGGGTAGAAAACC-AAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61853 20 -   1784207 AGTCAGGGTAGAAAACC-AGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22264229 21 + 158406734 AGTTAGGGTAGAAAATGAAGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495592 20 +  54856640 AGTTAGGGTAGAAAATG-AGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638616 20 -   2910086 AGTTAGAATAGAAAATG-AGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666197 20 +  42888418 AGTTAGGGTAGAAAATG-AGA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113289763 19 + 116334831 AGTTAGGGCAG-AAACC-AGA
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        34763 19 +     80520 AGTTAGGGCAG-AAACC-AGA
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             651589 19 -  36342412 AATTAGGACAG-AAACC-AGA
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81368652  0 + 145441459 C
e dasNov3.JH570731            1823404 35 +   3943991 I
e canFam3.chr3               54428304  0 +  91889043 C

a score=35279.000000
s hg38.chr15_KI270850v1_alt    356456 4 +    430880 GTGT
s panTro5.chr15              63509855 4 +  83230942 GTGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466948 4 +  99763055 GTGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67132 4 -   1709092 GTGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226555 4 - 121039945 GTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907319 4 + 169600520 GCGT
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              108434059 4 - 171882078 GCGT
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011945v1        44792 4 -   2311642 GCGT
i macNem1.NW_012011945v1    C 0 I 1
s cerAty1.NW_012002657v1        42982 4 -   1987038 GCGT
i cerAty1.NW_012002657v1    C 0 I 1
s chlSab2.chr29              21123231 4 -  24206276 GCAT
i chlSab2.chr29             C 0 I 1
s manLeu1.NW_012106908v1        38396 4 -   1397330 GCGT
i manLeu1.NW_012106908v1    C 0 I 1
s colAng1.NW_012117110v1        61873 4 -   1784207 GTGT
i colAng1.NW_012117110v1    C 0 I 1
s calJac3.chr6               22264250 4 + 158406734 GTCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495612 4 +  54856640 GTCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638636 4 -   2910086 GTTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666217 4 +  42888418 GTCT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113289782 4 + 116334831 GTGT
i micMur3.chr9              C 0 I 136
s proCoq1.NW_012142813v1        34782 4 +     80520 GTGT
i proCoq1.NW_012142813v1    C 0 C 0
e mm10.chr7                  81368652 0 + 145441459 C
e dasNov3.JH570731            1823404 35 +   3943991 I
e canFam3.chr3               54428304 0 +  91889043 C
e otoGar3.GL873530             651608 0 -  36342412 C

a score=13600.000000
s hg38.chr15_KI270850v1_alt    356460 1 +    430880 G
s panTro5.chr15              63509859 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466952 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67136 1 -   1709092 G
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226559 1 - 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907324 1 + 169600520 G
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              108434064 1 - 171882078 G
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011945v1        44797 1 -   2311642 G
i macNem1.NW_012011945v1    I 1 C 0
s cerAty1.NW_012002657v1        42987 1 -   1987038 G
i cerAty1.NW_012002657v1    I 1 C 0
s chlSab2.chr29              21123236 1 -  24206276 G
i chlSab2.chr29             I 1 C 0
s manLeu1.NW_012106908v1        38401 1 -   1397330 G
i manLeu1.NW_012106908v1    I 1 C 0
s colAng1.NW_012117110v1        61878 1 -   1784207 G
i colAng1.NW_012117110v1    I 1 C 0
s calJac3.chr6               22264254 1 + 158406734 G
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495616 1 +  54856640 G
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638640 1 -   2910086 G
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666221 1 +  42888418 G
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        34786 1 +     80520 G
i proCoq1.NW_012142813v1    C 0 I 170
e micMur3.chr9              113289786 136 + 116334831 I
e mm10.chr7                  81368652 0 + 145441459 C
e dasNov3.JH570731            1823404 35 +   3943991 I
e canFam3.chr3               54428304 0 +  91889043 C
e otoGar3.GL873530             651608 0 -  36342412 C

a score=775926.000000
s hg38.chr15_KI270850v1_alt    356461 78 +    430880 ggccaggcacggtggctc-acatctgtaatcccagcattttgggagtccgaggcgggtggatcacaaggtcaggagttc
s panTro5.chr15              63509860 78 +  83230942 ggccaggcacggtggctc-acatctgtaatcccagcattttgggagcccgaggcgggtggatcacaaggtcaggagttc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80466953 78 +  99763055 ggccaggcacggtggctc-acatctgtaatcccagcattttgggagcccgaggcgggtggatcacaaggtcaggagttc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67137 78 -   1709092 ggccaggcacggtggctc-acatctgtaatcccagcattttgggagtccgaggcgggtggatcacaaggtcaggagttc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226560 79 - 121039945 ggctgggcacggtggctctccacttgtgatcccagcattttgggaggccgaggcgggtggatcacaaggtcaggagctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907325 78 + 169600520 ggccaggcacggtggctc-acacctgtaatcccagcattttgggaggccgaggtgggtggatcacaaggtcaggagttc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108434065 78 - 171882078 ggccaggcacggtggctc-acacctgtaatcccagcattttgggaggccgaggtgggtggatcacaaggtcaggagttc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44798 78 -   2311642 ggccaggcacggtggctc-acacctgtaatcccagcattttgggaggccgaggtgggtggatcacaaggtcaggagttc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        42988 78 -   1987038 ggccaggcacggtggctc-acacctgtaatcccagcattttgggagaccgaggcgggtggatcacagggtcaggagttc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21123237 78 -  24206276 ggccaggcatggtggctc-acacctgtaatctcagcattttgggaggccgaggcgggtggatcacaaggtcaggagttc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        38402 78 -   1397330 ggccaggcacggtggctc-acacctgtaatcccagcattttgggaggccgaggcgggtggatcacagggtcaggagttc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61879 78 -   1784207 ggtcgggcacggtggctc-acacctgtaatcccagcattttgggaggccgaggcgggtggatcacaaggtcaggagttc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22264255 78 + 158406734 ggccaggcacagtagctc-atgcctgtaatcccagcactttgggaggctgaggtgggtggatcacgaggtcaggagtta
i calJac3.chr6              C 0 I 303
s saiBol1.JH378108           50495617 78 +  54856640 ggccaggcacagtggctc-acgcctgtaatcctagcactttgggaggctgaggtgggtggatcacgaggtcaggagtta
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638641 78 -   2910086 ggctgggcacagtggctc-acgcctgtaatcctagtactttgggaggctgaggcgggcggatcatgaggtcacaagtta
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666222 78 +  42888418 ggccgggcacagtggttc-aagcctgtaatcctagcactttgggaggctgaggcggatggatcacgaggtcaggagtta
i aotNan1.NW_018505940v1    C 0 C 0
e micMur3.chr9              113289786 136 + 116334831 I
e proCoq1.NW_012142813v1        34787 170 +     80520 I
e mm10.chr7                  81368652  0 + 145441459 C
e dasNov3.JH570731            1823404 35 +   3943991 I
e canFam3.chr3               54428304  0 +  91889043 C
e otoGar3.GL873530             651608  0 -  36342412 C

a score=20010.000000
s hg38.chr15_KI270850v1_alt    356539 2 +    430880 aa
s panTro5.chr15              63509938 2 +  83230942 aa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80467031 2 +  99763055 aa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67215 2 -   1709092 aa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226639 2 - 121039945 aa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907403 2 + 169600520 aa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108434143 2 - 171882078 aa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44876 2 -   2311642 aa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        43066 2 -   1987038 aa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21123315 2 -  24206276 aa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        38480 2 -   1397330 aa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61957 2 -   1784207 aa
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22264636 2 + 158406734 aa
i calJac3.chr6              I 303 C 0
s saiBol1.JH378108           50495695 2 +  54856640 aa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638719 2 -   2910086 aa
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666300 2 +  42888418 ag
i aotNan1.NW_018505940v1    C 0 C 0
e micMur3.chr9              113289786 136 + 116334831 I
e proCoq1.NW_012142813v1        34787 170 +     80520 I
e mm10.chr7                  81368652 0 + 145441459 C
e dasNov3.JH570731            1823404 35 +   3943991 I
e canFam3.chr3               54428304 0 +  91889043 C
e otoGar3.GL873530             651608 0 -  36342412 C

a score=1221086.000000
s hg38.chr15_KI270850v1_alt    356541 149 +    430880 gaccca---cctggccaagatggtg-aaaccccgtctctactt--------------taaaaaa----------------aaaaattagctcggtgtggtggtgggcacctctaatcccagctactcaggaggctgaggca-gaggattgcttgaacccgggaggcagaggttgcagtgagcca
s panTro5.chr15              63509940 154 +  83230942 gacccg---cctggccaagatggcg-aaaccccgtctctactt---------aaaaaaaaaaaa----------------aaaaattagctcggtgtggtggtgggcacctctaatcccagctactcaggaggctgaggca-gaggattgcttgaacccgggaggcagcggttgcagtgagcca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80467033 154 +  99763055 gacccg---cctggccaagatggcgaaaaccccgtctctactt----------aaataaaaaaa----------------aaaaattagctcggtgtggtggtgggcacctctaatcccagctactcaggaggctgaggca-gagtattgcttgaacccgggaggcagcggttgcagtgagcca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67217 151 -   1709092 gacccg---cctggccaagatggtg-aaaccccatctctactt------------aaaaaaaaa----------------aaaaattagctcggcgtggtggtgggcacctctaatcccagctactcaggaggctgaggca-gaggattgtttgaacccggcaggcagaggttgcagtgagcca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226641 163 - 121039945 gacccg---cctggccaagatggtg-aaaccccgtctctacttaaaaaaaaaaaaaaaaaaaaa----------------aaaaattagctgggcatggtggtgggcacctataatcccagctactcaggaggctgaggca-gaggactgcttgaacccgggaggcagaggttgcagtgagctg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907405 154 + 169600520 gaccca---cctggccaagatggtg-aaaccccatctctactt---------aaaaaaaaaaaa----------------aaaaattagctgggcgtggtggcgggcgcctacaatcccagcttcttgggaggctgaggaa-gagaattgcttgaacccaggaggcagaggttgcagtgagctg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108434145 154 - 171882078 gaccca---cctggccaagatggtg-aaaccccatctctactt---------aaaaaaaaaaaa----------------aaaaattagctgggcgtggtggcgggcgcctacaatcccagcttcttgggaggctgaggaa-gagaattgcttgaacccaggaggcagaggttgcagtgagctg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        44878 149 -   2311642 gaccca---cctggccaagatggtg-aaaccccgtctctact--------------aaaaatac----------------aaaaattagctgggcatggtggtgggtgcttgtaatcccagctactcaggaggctgaggca-gagaactgcttgaacccgggaggcagaggttgcagtgagcca
i macNem1.NW_012011945v1    C 0 I 2633
s cerAty1.NW_012002657v1        43068 149 -   1987038 gaccca---cctggccaagatggtg-aaaccccatctctact--------------taaaaaaa----------------aaaaattagctgggcgtgatggcgggggcctacaatcccagcttcttgggaggctgaggaa-gagaactgcttgaacccaggaggcagacgttgcagtgagctg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21123317 165 -  24206276 gaccca---cctggccaagatggtg-aaaccccatctctact--------------taaaaaacaaacaaacaaacaaacaaaaattagctgggcatggtggcgggcgcctacaatcccagcttcttgggaggctgaggca-gagaattgcttgaacccaggaggcagacgttgcagtgagctg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        38482 151 -   1397330 gaccca---cctggccaagatggtg-aaaccccatctctagt--------------aaaaataca---------------aaaaattagctgggcatggtggcaggtgtctgtaatcccagctactcaggaggctgaagcaggataattgcttgaacttgggaggtggacattgcagtaagccg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        61959 156 -   1784207 gacccg---cctggccaagatggtg-aaaccccatctctactt-------aaaaaaaaaaatac----------------aaaaattagctggacgtggtggcgggcgcctacaatcccagcttcttgggaggctgaggca-gagaattgcttgaacccaggaggcagaggttgcagtgagctg
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22264638 156 + 158406734 gaccaa---tctggccaagatggtg-aaaccccgtctctactt------taaaaaaaaaaaaaa----------------aaaaattagctgggcatggtggcgggtgcctgtaatcccagctactcgggaggctgaggca-gagaacagctc-aaaccaggaggcagacattgcagtgagctg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495697 147 +  54856640 gaccag---cctggccaagatggtg-aaaccccgtatctactt----------------aaaaa----------------aaaaattagccgggcatggtggcgggcgcctgtaatcccagctactcgggaggctgaggca-gagaatggctcgaagccaggaggcggagactgcagtgagctg
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638721 150 -   2910086 gaccag---cctggccaagatggtg-aaaccccgtctctactt-------------aaaaaaaa----------------aaaaattagcctggcatgttggcgggcgcctgtaatcccagcaactcgggaggctgaggca-gagaatggctcgaacccaggaggtggagattgcagtgagctg
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666302 159 +  42888418 gaccagtctcctggccaagatggtg-aaaccccatctctactt-------aaaaaaaaaaaaaa----------------aaaaattagctgggcatggtggcgggcgcctgtaatcccagctactcgggaggctgaggca-gagaacggcttgaacccaggaggcggagattgcagtgagctg
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54428304  36 +  91889043 ------------------------------------------------------------------------------------------------------------------AACCTGACTGGTCAGCAGGT--GGGCA-GA----------AACCAGAGA---------------------
i canFam3.chr3              C 0 C 0
e micMur3.chr9              113289786 136 + 116334831 I
e proCoq1.NW_012142813v1        34787 170 +     80520 I
e mm10.chr7                  81368652   0 + 145441459 C
e dasNov3.JH570731            1823404  35 +   3943991 I
e otoGar3.GL873530             651608   0 -  36342412 C

a score=60389.000000
s hg38.chr15_KI270850v1_alt    356690 5 +    430880 agatc
s panTro5.chr15              63510094 5 +  83230942 agatt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80467187 5 +  99763055 agatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67368 5 -   1709092 agatc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226804 5 - 121039945 agatc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907559 5 + 169600520 agatc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108434299 5 - 171882078 agatc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        47660 5 -   2311642 agatc
i macNem1.NW_012011945v1    I 2633 C 0
s cerAty1.NW_012002657v1        43217 5 -   1987038 agatc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21123482 5 -  24206276 agatc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        38633 5 -   1397330 agatc
i manLeu1.NW_012106908v1    C 0 I 7740
s colAng1.NW_012117110v1        62115 5 -   1784207 agatc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22264794 5 + 158406734 agatc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495844 5 +  54856640 agatc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638871 5 -   2910086 agatc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666461 5 +  42888418 agatc
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54428340 5 +  91889043 AGATC
i canFam3.chr3              C 0 C 0
e micMur3.chr9              113289786 136 + 116334831 I
e proCoq1.NW_012142813v1        34787 170 +     80520 I
e mm10.chr7                  81368652 0 + 145441459 C
e dasNov3.JH570731            1823404 35 +   3943991 I
e otoGar3.GL873530             651608 0 -  36342412 C

a score=345767.000000
s hg38.chr15_KI270850v1_alt    356695 45 +    430880 gcaccactgtactccagcttggtcgacagagtgagactccatctc
s panTro5.chr15              63510099 45 +  83230942 gcaccactgtactccagcttggtcgacagagtgagactccatctc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80467192 45 +  99763055 gcaccactgtactccagcttggtcgacagagtgagactccatctc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67373 45 -   1709092 gcaccactgtactccagcttggtcgacagagtgagactccatctc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226809 45 - 121039945 aggccactgtactctagcttgggcgacagagtgagactccatctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907564 45 + 169600520 gtgccactgcactccagcttgggcgacagagtgagactccatctc
i rheMac8.chr7              C 0 I 6
s macFas5.chr7              108434304 45 - 171882078 gtgccactgcactccagcttgggcgacagagtgagactccatctc
i macFas5.chr7              C 0 I 7
s macNem1.NW_012011945v1        47665 45 -   2311642 gtgccactgcactccagcttgggcgacagagtgagactccatctc
i macNem1.NW_012011945v1    C 0 I 7
s cerAty1.NW_012002657v1        43222 45 -   1987038 gtgccactgcactccagcttgggcgacacagtgagactccatctc
i cerAty1.NW_012002657v1    C 0 I 13
s chlSab2.chr29              21123487 45 -  24206276 gtgccactgcactccagcttgggcgacagagtgagactccatctc
i chlSab2.chr29             C 0 I 8
s colAng1.NW_012117110v1        62120 45 -   1784207 gtgccactgcactccagcttgggtgacagagtgagactccatctc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22264799 45 + 158406734 acaccaccgcattccagccggggtgacagagcaagactccatctc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495849 45 +  54856640 acaccaccgcactccagcctgggcaacagagcaagactccatctc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638876 45 -   2910086 acaccaccgcactccagcctaggcgacagagcaagattccatctc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666466 45 +  42888418 acaccaccacactccagcctgggtgacagagcaagactccatatc
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54428345  1 +  91889043 ----------------------------------G----------
i canFam3.chr3              C 0 C 0
e micMur3.chr9              113289786 136 + 116334831 I
e proCoq1.NW_012142813v1        34787 170 +     80520 I
e mm10.chr7                  81368652  0 + 145441459 C
e dasNov3.JH570731            1823404 35 +   3943991 I
e otoGar3.GL873530             651608  0 -  36342412 C
e manLeu1.NW_012106908v1        38638 7740 -   1397330 I

a score=5065.000000
s hg38.chr15_KI270850v1_alt    356740 2 +    430880 aa
s panTro5.chr15              63510144 2 +  83230942 aa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80467237 2 +  99763055 aa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67418 2 -   1709092 aa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226854 2 - 121039945 aa
i nomLeu3.chr6              C 0 C 0
s macNem1.NW_012011945v1        47717 1 -   2311642 -a
i macNem1.NW_012011945v1    I 7 C 0
s cerAty1.NW_012002657v1        43280 2 -   1987038 aa
i cerAty1.NW_012002657v1    I 13 C 0
s chlSab2.chr29              21123540 2 -  24206276 ag
i chlSab2.chr29             I 8 C 0
s manLeu1.NW_012106908v1        46378 2 -   1397330 aa
i manLeu1.NW_012106908v1    I 7740 C 0
s colAng1.NW_012117110v1        62165 1 -   1784207 -a
i colAng1.NW_012117110v1    C 0 C 0
e micMur3.chr9              113289786 136 + 116334831 I
e proCoq1.NW_012142813v1        34787 170 +     80520 I
e aotNan1.NW_018505940v1     40666511 0 +  42888418 C
e mm10.chr7                  81368652 0 + 145441459 C
e calJac3.chr6               22264844 0 + 158406734 C
e dasNov3.JH570731            1823404 35 +   3943991 I
e canFam3.chr3               54428346 0 +  91889043 C
e cebCap1.NW_016107610v1       638921 0 -   2910086 C
e otoGar3.GL873530             651608 0 -  36342412 C
e macFas5.chr7              108434349 7 - 171882078 I
e rheMac8.chr7               60907609 6 + 169600520 I
e saiBol1.JH378108           50495894 0 +  54856640 C

a score=7681.000000
s hg38.chr15_KI270850v1_alt    356742 13 +    430880 aaaaaaaaa----------------gaaa
s panTro5.chr15              63510146 12 +  83230942 aaaaaaaaa-----------------aaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80467239 10 +  99763055 aaaaaaa-------------------aaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67420 18 -   1709092 aaaaaaaaa-----------agaaaaaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226856 29 - 121039945 aaaaaaaaaaaaaaaaaaaaaaaaagaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907615  3 + 169600520 --------------------------aaa
i rheMac8.chr7              I 6 C 0
s macFas5.chr7              108434356  3 - 171882078 --------------------------aaa
i macFas5.chr7              I 7 C 0
s macNem1.NW_012011945v1        47718 13 -   2311642 aaaagaaaa----------------gaaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        43282 13 -   1987038 aaaagaaaa----------------gaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21123542 13 -  24206276 aaaagaaaa----------------gaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        46380 13 -   1397330 aaaagaaaa----------------gaaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        62166 13 -   1784207 gaaaaaaaa----------------agaa
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22264844  4 + 158406734 -------------------------aaaa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495894  4 +  54856640 -------------------------aaaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638921  4 -   2910086 -------------------------aaaa
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666511  4 +  42888418 -------------------------aaaa
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1823439 13 +   3943991 GAGAAACCA----------------GAGA
i dasNov3.JH570731          I 35 C 0
e micMur3.chr9              113289786 136 + 116334831 I
e proCoq1.NW_012142813v1        34787 170 +     80520 I
e mm10.chr7                  81368652  0 + 145441459 C
e canFam3.chr3               54428346  0 +  91889043 C
e otoGar3.GL873530             651608  0 -  36342412 C

a score=122432.000000
s hg38.chr15_KI270850v1_alt    356755 17 +    430880 agaaaag--aaaaCCAGAG
s panTro5.chr15              63510158 17 +  83230942 agaaaag--aaaaCCAGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80467249 17 +  99763055 aagaaag--aaaaCCAGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67438 17 -   1709092 agaaaag--aaaACCAGAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226885 17 - 121039945 agaaaag--aaaaCCAGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907618 17 + 169600520 agaaaag--aaaaCCAGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108434359 17 - 171882078 agaaaag--aaaaCCAGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        47731 17 -   2311642 agaaaag--aaaaCCAGAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        43295 17 -   1987038 agaaaag--aaaaCCAGAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21123555 17 -  24206276 agaaaag--aaaaCCAGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        46393 17 -   1397330 agaaaag--aaaaCCAGAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        62179 17 -   1784207 agaaaag--aaaaCTAAAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22264848 18 + 158406734 acaaagga-aaaaaCAGAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495898 19 +  54856640 acaaatgataaaaaCAGAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638925 18 -   2910086 acaaacga-aaaaaCAGAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666515 18 +  42888418 acaaacga-aaaaaCAGAG
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81368652 16 + 145441459 AGGACAG---AAACCAAAG
i mm10.chr7                 C 0 I 2
s dasNov3.JH570731            1823452  3 +   3943991 ---------------AGA-
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113289786 136 + 116334831 I
e proCoq1.NW_012142813v1        34787 170 +     80520 I
e canFam3.chr3               54428346  0 +  91889043 C
e otoGar3.GL873530             651608  0 -  36342412 C

a score=1900780.000000
s hg38.chr15_KI270850v1_alt    356772 158 +    430880 TGTGAACAGGTTAGTCCTCAAGAGACTTCTAAAGGGGAGT-GGCAAAAAACA-GAC-ATGTCCTCTGGC------AACCTTAGACTGCACATCTGGTCTGCCCACTGGGCTTCTGTACAAGGC----------------------A-TCATTAAG-------AGAGTCCTTGTTT-CCAGGTCCCCCACAGTAG-------TCTC
s panTro5.chr15              63510175 158 +  83230942 TGTGAACAGGTTAGTCCTCAAGAGACTTCTAAAGGGGAGT-GGGAAAAAACA-GAC-ATGCCATCTGGC------ATCCTTAGACTGCACATCTGGTCTGCCCACTGGGCTTCTGTACAAGGC----------------------A-TCATTAAG-------AGAGTCCTTGTTT-CCAGGTCCCCCACAGTAG-------TCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80467266 158 +  99763055 TGTGAACAGGTTAGTCCTCAAGAGACTTCTAAAGGGGAGT-GGGAAAAAACA-GAC-ATGCCATCTGGC------ATCCTTAGACTGCACATCTGGTCTGCCCACTGGGCTTCTGTACAAGGC----------------------A-TCATTAAG-------AGAGTCCTTGTTT-CCAGGTCCCCCACAGTAG-------TCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67455 158 -   1709092 TGTGAACAGGTTAGTCCTCAAGAGACTTCTAAAGGGGAGT-GGGAAAAAACA-GAC-ATGCCCTCTGGC------ATCCTTAGACTGCACATCTGGTCTGCCCACTGGGCTTCTGTACAAGGC----------------------A-TCATTAAG-------AGAGTCCTTGTTT-CCAGGTCCCCCACAGTAG-------TCTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17226902 158 - 121039945 TGTGAACAGGTTAGTCCTCAAGGGACTTCTAAAGGGGAGT-GGGAAAAAACA-GAC-ATGCCCTCTGGC------ATCCTTAGACTGCACATCTGGTCTGCCCACTGGGCTTCTGTACAAGGC----------------------A-TCTTTAAG-------AGAGTCCTTCTTT-CCAGGTCCCCCAAAGTAG-------TCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907635 158 + 169600520 TGTGAACAAGTTAGTCCTCAAGGGACTTCTAAAGGGGAGT-GGGAGAAAACA-GAC-ATGCCTTCTGGC------ATCCTTAGACTGCACATCTGGTCTGCCCACTGGGCTTCTGTACAAGGC----------------------A-TCATTAAG-------AGAGTAATTGTTT-CCAGGTCCCCCAAAGTAG-------TCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108434376 158 - 171882078 TGTGAACAAATTAGTCCTCAAGGGACTTCTAAAGGGGAGT-GGGAGAAAACA-GAC-ATGCCTTCTGGC------ATCCTTAGACTACACATCTGGTCTGCCCACTGGGCTTCTGTACAAGGC----------------------A-TCATTAAG-------AGAGTAATTGTTT-CCAGGTCCCCCAAAGTAG-------TCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        47748 158 -   2311642 TGTGAACAAGTTAGTCCTCAAGGGACTTCTAAAGGGGAGT-GGGAGAAAACA-GAC-ATGCCTTCTGGC------ATCCTTAGACTGCACATCTGGTCTGCCCACTGGGCTTCTGTACAAGGC----------------------A-TCATTAAG-------AGAGTAATTGTTT-CCAGGTCCCCCAAAGTAG-------TCTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        43312 158 -   1987038 TGTGAACAAGTTAGTCCTCAAGGGACTTCTAAAGGGGAGT-GGGAGAAAACA-GAC-ATGCCTTCTGGC------ATCCTTAGACTGCACATCTGGTCTGCCCACTGGGCTTCTGTACAAGGC----------------------A-TCATTAAG-------AGAGTAATGGTTT-CCAGGTCCCCCAAAGTAG-------TCTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21123572 187 -  24206276 TGTGAACAAGTTAGTCCTCAAGGGACTTCTAAAGGGGAGT-GGGAGAAAACA-GAC-ATGCCTTTTGGC------ATCCTTAGACTGCACATCTGGTCTGCCCACTGGGCTTCTGTACAAGGCATCATCTGTACAATGATCATTAA-TCATTAAACATAATTAGAGTAATTGTTT-CCAGGTCCCCCAAAGTAG-------TCTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        46410 158 -   1397330 TGTGAACAAGTTAGTCCTCAAGGGACTTCTAAAGGGGAGT-GGGAGAAAACA-GAC-ATGCCTTCTGGC------ATCCTTAGACTGCACATCTGGTCTGCCCACTGGGCTTCTGTACAAGGC----------------------A-TCATTAAG-------AGAGTAATTGTTT-CCAGGTCCCCCAAAGTAG-------TCTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        62196 158 -   1784207 TGTGAACAAGTTAGTCCTCAAGGGACTTCTAAAGGGGAGT-GGGAGAAAACA-GAC-ATGCCTTCTGGC------ATCCTTAGACTACACATCTGGTCTGCCCACTGGGCTTCTGTACAAGGC----------------------A-TCATTAAG-------AGAGTAATTGTTT-CCAGGTCCCCCAAAGTAG-------TCTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22264866 165 + 158406734 TTTGAATGGGTCAGTGCTCAAGGGACTTCTAAAGACGAGT-GGGGAAAAACA-GACAATGCTCTCTGACACTGATATCTTTAGAATGCACATATGGTCTG-CCACTGGGCTTCTGCACTAAAC----------------------A-TCATTAAG-------AGAGTCCTTGTTTCCCAGGTCTCCCAAAGTAG-------TCTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50495917 165 +  54856640 CGTGAATGGGTTAGTGCTCAAGGGACTTCTAAAGACGAGT-GAGAAAAAACA-GACAATGCCCTCTGACACTGATATCTTTAGAATGCATATATGGTCTGCCCACTGGGCTTCTGCACTAAAC----------------------A-TCATTAAG-------AGAGTCCTTATTT-CCAGGTCCCCCAAAGTAG-------TCTC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       638943 165 -   2910086 TGTGAATGGGTTAGTGCTCAAGGGACTTCTAAAGACAAGT-GGGAAAAAACA-GACAATGCCCTCTGACACTGATATCTTTAGAATGTACATATGGTCTGCCCACTGGGCTTTTGCACTAAGC----------------------A-TCATTAAC-------AGAGTCCTTGTTT-CTGGGTCCCCCAGAGTAG-------TCTC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666533 166 +  42888418 TGTGAATGGGTTTGTGCTCAAAGGACTTCTAAAGATGAGTGGGGAAAAAACC-GACAATGCCCTCCGACACTGATATCTTTAGAATGCACATATGGTCTGCCCACTGGGCATCTGCACTAAAC----------------------A-TCATTAAA-------AGAGTCCTTGTTT-CCAGGTCCTCCAAAGTAG-------TCTC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             651608 145 -  36342412 TGTG-ACAGGGTAATTCCCAAGGGTCTTCTCAAGCCG-GT-GGGAGCAAACA-GAA-ATATCCTCTGGC------ACCTGCAGACTAAACATCTGGTCCGCCCACAGGTC-----------------------------------A-TCA------------GGAGTCCTTGTTT-CCTGATCCCCCAAAGTAGGATAGATTCTC
i otoGar3.GL873530          C 0 I 2
s mm10.chr7                  81368670 152 + 145441459 GATGAATAGGTTAAT-CTCATGAGACTTCTAAAAGGGAAT-----TAGAATA-GAC-ATGTCCTCTGGC------ATCCTCAGGCTGAGTATCTCACTTGCCCACTGGGCTTCTGTACAAAGTG---------------------G-CCATTA---------AGAGTTCTTTCTT-CCAGGTCCCTCAAGGTAG-------ATTT
i mm10.chr7                 I 2 I 4
s canFam3.chr3               54428346 144 +  91889043 -----ACAGGTTAATCTCTGAGGGACTTGTAAA--------GAGAAAACA-A-GAC-ATGGTCTCTGGC------ATCCTTCCACTGAGCATCTGGTCTACCTGCTGGGCTTTGGTACAAGGC----------------------ATTCATTA---------GGAGTCCCTGTTT-CCAGGCCCCCCAAAGTAG-------ATTC
i canFam3.chr3              C 0 I 2
s dasNov3.JH570731            1823455 155 +   3943991 --TGAACAGGTTACTCTTCAAGGAACTCCTAAAGGGGAGT-GGAAGGAAACAGGAC-ATGTCTTCTGAC------ATCTTTGCATTGAGCATCTGGTCTGCTCACTGGGCTTCTGTACAAGGT----------------------ATTCACTA---------GGAGCCCCTGTTT-CGAGGT-TCCCAAAGTAT-------ATTC
i dasNov3.JH570731          C 0 I 4
e micMur3.chr9              113289786 136 + 116334831 I
e proCoq1.NW_012142813v1        34787 170 +     80520 I

a score=444733.000000
s hg38.chr15_KI270850v1_alt    356930 28 +    430880 AGTCACCTCACTCTTCTGCTGCATAATG
s panTro5.chr15              63510333 28 +  83230942 AGTCACCTCACTCTTCTGCTGCATAATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80467424 28 +  99763055 AGTCACCTCACTCTTCTGCTGCATAATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67613 28 -   1709092 AGTCACCTCACTCTTCTGCTGCATAATG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17227060 28 - 121039945 AGTCACCTCACTCTTCTGCTGCATAATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907793 28 + 169600520 AGTCACCTCACTCTTCTGCTGAATAACG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108434534 28 - 171882078 AGTCACCTCACTCTTCTGCTGAATAACG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        47906 28 -   2311642 AGTCACCTCACTCTTCTGCTGAATAACG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        43470 28 -   1987038 AGTCACCTCACTCTTCTGCTGAATAACG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21123759 28 -  24206276 AGTCACCTCACTCTTCTGCTGAATAACG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        46568 28 -   1397330 AGTCACCTCACTCTTCTGCTGAATAACG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        62354 28 -   1784207 AGTCACCTCACTCTTCTGCTGAATAACG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22265031 28 + 158406734 AGTCACCTCACTCTTCTGCTGAATAATG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50496082 28 +  54856640 AGCCACCTCACTCTTCTGCTGAATAATT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       639108 28 -   2910086 AGTCACCTCACTCTTCTGCTGAATAATG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666699 28 +  42888418 AGTCACCTCACTCTTCTGCTGAATAATG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113289922 28 + 116334831 AGTCACTTCATTCTCCTGCTGAATAAAA
i micMur3.chr9              I 136 C 0
s otoGar3.GL873530             651755 28 -  36342412 AGTCACTTCACTCTGCTGCTGAGTAACA
i otoGar3.GL873530          I 2 C 0
s mm10.chr7                  81368826 28 + 145441459 TGTCACTTCACTCTCCTGCTGAGTAATG
i mm10.chr7                 I 4 C 0
s canFam3.chr3               54428492 26 +  91889043 GGGCACCCCCTTC--CTGCTGAGTAATG
i canFam3.chr3              I 2 C 0
s dasNov3.JH570731            1823614 28 +   3943991 AATCACCCCATTTTCCTGCTGAGTAATG
i dasNov3.JH570731          I 4 C 0
e proCoq1.NW_012142813v1        34787 170 +     80520 I

a score=2534540.000000
s hg38.chr15_KI270850v1_alt    356958 175 +    430880 CTGCACACAAAAGAGTCGCAAGGGGGAAGGC---AGGAAGACAAAT--CCAGCGGGTGGTACAGCTGATAAGCTGAGACTCAGGGATCAAGATGGGGCTGGAACTGTCTACCATATGCCCTCACCTTCAGAGATCTCATCAAGGGAGCACATCACCTCTAGC----TGAATAGCCCCTATAGTA
s panTro5.chr15              63510361 175 +  83230942 CTGCACACAAAAGAGTCGCAAGGGGGAAGGC---AGGAAGACAAAT--CCAGTGGGTGGTACAGCTGATAAGCTGAGACTCAGGGATCAAGATGGGGCTGGAACTGTCTACCATATGCCCTCACCTTCAGAGATCTCATCAAGGGAGCACATCACCTCTAGC----TGAATAGCCCCTAGAGTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80467452 175 +  99763055 CTGCACACAAAAGAGTCGCAAGGGGGAAGGC---AGGAAGACAAAT--CCAGTGGGTGGTACAGCTGATAAGCTGAGACTCAGGGATCAAGATGGGGCTGGAACTGTCTACCATATGCCCTCACCTTCAGAGATCTCATCAAGGGAGCACATCACCTCTAGC----TGAATAGCCCCTAGAGTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67641 175 -   1709092 CTGCACACAAAAGAGTCGCAAGGGGGAAGGC---AGGAAGACAAAT--CCAGCGGGTGGTACAGCTGATAAGCTGAGACTCAGGGATCAAGATGGGGCTGGAACTGTCTACCATATGCCCTCACCTTCAGAGATCTCATCAAGGGAGCACATCACCTCTAGC----TGAATAGCCCCTAGAGTA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17227088 175 - 121039945 CTGCACACAAAAGAGTCGCAAAGGGGAAGGC---AGGAAGACAAAT--CCAGCGGGTGGTACAGCTGATGAGCTGAGACTCAGGGATCAAGATGGGGCTGGAACTGTCTACCATATGCCCTCACCTTCAGAGATCTCATCAAGGGAGCACATCACCTCCAGC----TGAATAGCCCCTAGAGTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907821 175 + 169600520 CTGCACACAGAAGAGTCACAAGGGGGAAGGC---AGGAAGACAAAT--CCAGCGGGTGGTACAGCTGATCAGCTGCGACTCAGGGATCAAGATGGGGCTGGAACTGTCTACCATATGCCCTCGCCTTCAGAGATCTCATCAAGGGCGCACATCACCTCTAGC----TGAATAGCCCCTGTAGTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108434562 175 - 171882078 CTGCACACAGAAGAGTCACAAGGGGGAAGGC---AGGAAGACAAAT--CCAGCGGGTGGTACAGCTGATCAGCTGCGACTCAGGGATCAAGATGAGGCTGGAACTGTCTACCATATGCCCTCGCCTTCAGAGATCTCATCAAGGGCGCACATCACCTCTAGC----TGAATAGCCCCTGTAGTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        47934 175 -   2311642 CTGCACACAGAAGAGTCACAAGGGGGAAGGC---AGGAAGACAAAT--CCAGCGGGTGGTACAGCTGATCAGCTGCGACTCAGGGATCAAGATGGGGCTGGAACTGTCTACCATATGCCCTCGCCTTCAGAGATCTCATCAAGGGCGCACATCACCTCTAGC----TGAATAGCCCCTGTAGTA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        43498 175 -   1987038 CTGCACACAGAAGAGTCACAAGGGGGAAGGC---AGGAAGACAAAT--CCAGCGGGTGGTACAGCTGATGAGCTGCGACTCAGGGATCAAGATGGGGCTGGAACTGTCTACCATATGCCCTCGCCTTCAGAGATCTCATCAAGGGCGCACATCACCTCTAGC----TGAATAGCCCCTGTAGTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21123787 175 -  24206276 CTGCACACAGAAGAGTCACAAGGGGGAAGGC---AGGAAGACAAAT--CCAGCGGGTGGTACAGCTGATGAGCTGCAACTCAGGGATCAAGATGGGGCTGGAACTGTCTACCATATGCCCTCGCCTTCAGAGATCTCATCAAGGGCGCACATCACCTCTAGC----TGAACAGCCCCTGTAGTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        46596 175 -   1397330 CTGCACACAGAAGAGTCACAAGGGGGAAGGC---AGGAAGACAAAT--CCAGCGGGTGGTACAGCTGATGAGCTGCGACTCAGGGATCAAGATGGGGCTGGAACTGTCTACCATATGCCCTCGCCTTCAGAGATCTCATCAAGGGCGCACATCACCTCTAGC----TGAATAGCCCCTGTAGTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        62382 175 -   1784207 CTGCACACAGAAGAGTCACAAGGGGGAAGGC---AGGAAGACAAAT--CCAGCGGGTGGTAACGCTGATGAGCTGCGACTCAGGGATCAAGATGGGGCTGGAACTGTCTACCATATGCCCTCGCCTTCAGAGATCTCATCAAGGGTGCGCATCACCTCTAGC----TGAATAGCCCATGTAGTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22265059 171 + 158406734 CCGCACATATAAGAGTCACAAGGAAGAAGGC---AGGAAGACATAT--CCAGAGGGTGGTGCAGCTGATGAGCTAAAACTCAAGGACTG-AGGGGGGCTAGAACTGTCTACCATATGCTCTTACCTTCATAGATCTCATCAAGGGAGCACACCACCTCTACC----CAAATAGCCTGT---GTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50496110 172 +  54856640 CTGCACATAGAAGAGTTACAAAGGGTAAGGC---AGGAAGACATAT--ACAGCGGGTGGTGGAGCTGATGAGCTAAGACTCAGGGACTGAAAGGGAACTAGAACTGTCTACCATAGGCCCTTACCTTCAGAGATCTCATGAAGGGAGCACACCACCTCTACC----TGAATAGCCTGT---GTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       639136 174 -   2910086 CCGCACATAGAAGAGTTACAAGGGGGAAGGC---AGGAAGACATATCCCCAGTGGGTGGTGCAGCTGATGAGCTAAGACTCAGGGACTGAGAGGGAACTAGAACTGTCTACCATAGGCCCTTACCTTCAGAGATCTCATCAAGGGAGCACACCACCTCTATC----TGAATAGCCTGT---GTA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666727 172 +  42888418 CCGCACACAGAAGAGTCACAAGGGGGAAGGC---AGGAAGACATAT--CCAGCGGGTGGTGCAGCTGATGAGCTAAGACTCAGGGACTGAATCGGGGCTGGAACTGTCTACCATACGCCTTTACCTTCAGAGATCTCATCAAGGGAGCAAACCACCTCTACC----CGAATAGCCTGT---GTA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113289950 175 + 116334831 CTGCACACAGAAGAGTCACAAGGGAGAAGCC---CGGAAGACAAAT--CCAGCAGGAGGTGCAGCTGATGAGCTGAGACTCAGGGACCAAGAGGGAGTCAGAACTGTCTGTCATGTGCTCTTGCCTTTAGAGAGCTCCTCAAGGGAGTACATCACCTCTGGT----TGAGTAGCCCCTGGATTA
i micMur3.chr9              C 0 I 97
s proCoq1.NW_012142813v1        34957 175 +     80520 CTGCACACAGAAGAGTCACAAGGGAAAAGGC---AGAAAGACCAAT--CCAGCGGGGGGTACAGCTGATGAGCTGAGACTCCGGGACCAAGAGGGAGTCAGAACTGTCTGTCATGTGCCCTCGCCTTTAGAGAACTGTTCAAGGGAGCAAATCACCTCTGGC----TGAGTAGCCCCTGGAATT
i proCoq1.NW_012142813v1    I 170 C 0
s otoGar3.GL873530             651783 158 -  36342412 --TCACATACAGAAATCACAAGGGAGAAGGC---AGGACCAC-AAT--CTAGCGGG----------GATGAGCTGACACTTAAGGACCCAAAGGGAGTCAGCA----CCATCATGTCCCCTCGCCTTTCAAGAGCTTATAAAGGGAGCACATCACCGCTGGC----TAAGAAGCCCCTGTAGTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81368854 171 + 145441459 CTGCATACAGAAGAGTCATAAGGGGAAAGGCTTTAGAAAGACAAAT--CCAGTGGGTGGTTAAGCTGATGAACTGAGAC-CAAGGGTGGAAAGCGAGTGGGAAGTGTCTGTCAAGTGCCCTCATCTTAAGAGATTTCATCAA-TGAACAGATCACCCCAGGCTTCTTACTTAGCT---------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54428518 166 +  91889043 CTGCATGC--CAGAGTC-CCTGGGGGGAGTC---AGGAAGACAG----CCATTAGCTGGTGCTGCTGATGAGCAGAGACTCAGG---TGGAGAGGAGTCAGAACTGTCCACTGCACAACCTGGCCCTGACGGGTCTCAGCAAGGGAACTCACCATCTCTGAC----CGGACAGCCCCAGGGCT-
i canFam3.chr3              C 0 I 2
s dasNov3.JH570731            1823642 173 +   3943991 --CCGCATGAAAGGGTCACAAGGAGGAAGGC---AGGAAGACAAGT--CCAGCAGGTGGTACAGTTTATGAGTTGAAACTCAGGGGTAGAGAGGGAGTCAGAATTGTCTGTTGTGTGTATTGGTGTTTAGGGATGTGAGCAAAAGAACACCTCAACTCTGGC----TCAATAGTCCCTTAGATT
i dasNov3.JH570731          C 0 C 0

a score=191976.000000
s hg38.chr15_KI270850v1_alt    357133 18 +    430880 ----GTATATGGT--TACTTTAAG
s panTro5.chr15              63510536 18 +  83230942 ----GTATATGGT--TACTTTAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80467627 18 +  99763055 ----GTATATGGT--TACTTTAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67816 13 -   1709092 ----GTATATGGT--TACT-----
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17227263 18 - 121039945 ----GTATATGGT--TACTTTAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60907996 18 + 169600520 ----GTATATGGT--TACTTTAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108434737 18 - 171882078 ----GTATATGGT--TACTTTAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        48109 18 -   2311642 ----GTATATGGT--TACTTTAAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        43673 18 -   1987038 ----GTATATGGT--TACTTTAAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21123962 18 -  24206276 ----GTATATGGT--TACTTTAAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        46771 18 -   1397330 ----GTATATGGT--TACTTTAAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        62557 18 -   1784207 ----GTATATGGT--TACTTTAAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22265230 16 + 158406734 ----GTATATGGT--GA--CTAAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50496282 18 +  54856640 ----GTATATGGT--TATTTTACG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       639310 18 -   2910086 ----GTATATGGT--TACTTTACA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666899 18 +  42888418 ----GTATATGGT--TACTTTAAG
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        35132 20 +     80520 ----ATGTAAGGAGATACTTTGAG
i proCoq1.NW_012142813v1    C 0 I 24
s otoGar3.GL873530             651941 20 -  36342412 ----ACATAAGGTAATACCCTGAG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81369025 18 + 145441459 ----ACATGAGGT--TACCTTAAG
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54428686 18 +  91889043 ----GCGTGGAGG--TATTTTAAC
i canFam3.chr3              I 2 I 5
s dasNov3.JH570731            1823815 23 +   3943991 GTCTACAGATGGC-CCACCTTAAA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113290125 97 + 116334831 I

a score=277612.000000
s hg38.chr15_KI270850v1_alt    357151 25 +    430880 ----TTTTCTCACCCAATA-TGTTAGAGTT
s panTro5.chr15              63510554 25 +  83230942 ----TTTTCTCACCCAATA-TGTTAGAGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80467645 25 +  99763055 ----TTTTCTCACCCAATA-TGTTAGAGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67829 25 -   1709092 ----TTTTCTCACCCAATA-TGTTAGAGTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17227281 25 - 121039945 ----TTTTCTCACCCAATA-TGTTAGAGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60908014 25 + 169600520 ----TTTTCTCACCCAATA-TGTTAGGGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108434755 25 - 171882078 ----TTTTCTCACCCAATA-TGTTAGGGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        48127 25 -   2311642 ----TTTTCTCACCCAATA-TGTTAGGGTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        43691 25 -   1987038 ----TTTTCTCACCCAATA-TGTTAGGGTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21123980 25 -  24206276 ----TTTTCTCACCCAATA-TGTTAGGGTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        46789 25 -   1397330 ----TTTTCTCACCCAATA-TGTTAGGGTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        62575 25 -   1784207 ----TTTTCTCACCCAGTA-TGTTAGGGTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22265246 25 + 158406734 ----TTTTCTCGCTCAATA-TGTTAGGGTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50496300 26 +  54856640 ----TTTTCTCACTCAATATTGTTAGGGTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       639328 25 -   2910086 ----TTTTCTCGCTCAATA-TGTTGGGGTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666917 25 +  42888418 ----TTTTCTCACCCAATA-TGTTAGGGTT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             651961 10 -  36342412 ------------ATAAATC-TTT-------
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81369043 22 + 145441459 -------TCTGGTCTAACA-TATTAAGGTT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54428709 25 +  91889043 ----AGTTCTTGTCCAACA-TGTTAGAGTT
i canFam3.chr3              I 5 C 0
s dasNov3.JH570731            1823838 29 +   3943991 TAAGACATTTTGTCCAACA-TGTTAGGGTT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113290125 97 + 116334831 I
e proCoq1.NW_012142813v1        35152 24 +     80520 I

a score=747162.000000
s hg38.chr15_KI270850v1_alt    357176 52 +    430880 CTGCTAACAGGACCACAggtgtaaca------------------ggaagcatatgaattttgtaaccaga
s panTro5.chr15              63510579 52 +  83230942 CTGCTAACAGGACCACAggtgtaaca------------------ggaagcatatgagttttgtaaccaga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80467670 52 +  99763055 CTGCTAACAGGACCACAggtgtaaca------------------ggaagcatatgagttttgtaaccaga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67854 52 -   1709092 CTGCTAACAGGACCACAggtgtaaca------------------ggaagcatatgagttttgtaaccaga
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17227306 52 - 121039945 CTGCTAATAGGACCACAggtgtaaca------------------ggaagcatatgagttttgtaaccaga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60908039 52 + 169600520 CTGCTAATAGGACCACAggtgtaaca------------------ggaagcatatgagtttcgtaaacaga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108434780 52 - 171882078 CTGCTAATAGGACCACAggtgtaaca------------------ggaagcatatgagtttcgtaaacaga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        48152 52 -   2311642 CTGCTAATAGGACCACAggtgtaaca------------------ggaagcatatgagtttcgtaaacaga
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        43716 52 -   1987038 CTGCTAATAGGACCACAggtgtaaca------------------ggaagcatatgagttttgtaaacaga
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21124005 52 -  24206276 CTGCTAATAGGACCACAggtgtaaca------------------ggaagcatatgagttttgtaaacaga
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        46814 52 -   1397330 CTGCTAATAGGACCACAggtgtaaca------------------ggaagcatatgagttttgtaaacaga
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        62600 52 -   1784207 CTGCTAATAGGACCACAggtgtaaca------------------ggaagcatatgagttttgtaaacaga
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22265271 52 + 158406734 CTACTAACAGGACCACAggtgtaaca------------------ggaagcatatgagttttataaccaga
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50496326 52 +  54856640 CTACTAACAGGACCACAggtttaaca------------------ggaagcatatgagttttataaccaga
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       639353 52 -   2910086 CTACTAACAGGACCACAggtctaaca------------------ggaagcatatgtgttttataaccaga
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666942 52 +  42888418 CTACTAACAGGACCACAggtgtaaca------------------ggaagcgtatgagttttataaccaga
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        35176 52 +     80520 CTGCTAATaggaacacgagtgtaaga------------------ggaagcgtaagagttttggaactaaa
i proCoq1.NW_012142813v1    I 24 I 2
s otoGar3.GL873530             651971 70 -  36342412 CTGCTAATAGGAACATGAGTGTGATGCGagtgtgggagtgtgatgggagcataaaagttttggaacccaa
i otoGar3.GL873530          C 0 I 1
s mm10.chr7                  81369065 51 + 145441459 CTGGTCACAGAAA-AGGGGTTTAATA------------------GGAAGAATGGGAGGTTTAGAACAAAA
i mm10.chr7                 C 0 I 2
s canFam3.chr3               54428734 52 +  91889043 CTGCTTACAGAAACACAgatgtaaca------------------gaaagcttaagagttttggaaccaaa
i canFam3.chr3              C 0 I 2
s dasNov3.JH570731            1823867 52 +   3943991 CCACTGAAAGGAACATATgtataata------------------gaaaatataagagttttggaaccaaa
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113290125 97 + 116334831 I

a score=3421286.000000
s hg38.chr15_KI270850v1_alt    357228 215 +    430880 gacctgggttagaattctgagccttccaggagttgtgtcactttgggcac-tttgt-aacctccatgagcctatttcctcatctg---------------------------------------ta----------------------------------------caaGCATTAAAATCATGTGATGTACTTAGCACAAAAATTAGTCGATAAA---TGGTGGTTATT----AGTCACTCCATGCCCCATTCCAGGATACTGAGGACAGTTT-CCACAGCCCTTCT-GTTCCACTACAGATCTT
s panTro5.chr15              63510631 215 +  83230942 gacctgggttagaattctgagtcttccaggagttgtgtcactttgggcac-tttgt-aacctccatgagcctatttcctcatctg---------------------------------------ta----------------------------------------caaGCATTAAAATCATGTGATGTACTTAGCACAAAAATTAGTCGATAAA---TGGTGGTTATT----AGTCACTCCATGCCCCATTCCAGGATACTGAGGACAGTTT-CCACAGCCCTTCT-GTTCCACTACGGATCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80467722 215 +  99763055 gacctgggttagaattctgagtcttccaggagttgtgtcactttgggcac-tttgt-aacctccatgagcctatttcctcatctg---------------------------------------ta----------------------------------------caaGCATTAAAATCATGTGATGTACTTAGCACAAAAATTAGTCGATAAA---TGGTGGTTATT----AGTCACTCCATGCCCCATTCCAGGATACTGAGGACAGTTT-CCACAGCCCTTCT-GTTCCACTACGGATCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        67906 215 -   1709092 gacctgggttagaattctgagtcttccagtagttgtgtcactttgggcac-tttgt-aacctccatgagcctatttcctcatctg---------------------------------------ca----------------------------------------caaGCATTAAAATCATGTGATGTACTTAGCACAAAAAGCAGTCGATAAA---TGGTGGTTATT----AGTCACTCCATGCCCCATTCCAGGATACTGAGGACAGTTT-CCACAGCCCTTCT-GTTCCATTACGGATCTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17227358 215 - 121039945 gacctgggttagaattctgagtcttccagtagttgtgtcactttgggcac-tttgt-aacctccatgaacctattttctcatctg---------------------------------------tG----------------------------------------CAAGCATTAAAATCATGTGATGTACTTAGCACAAAAAATAGTCGATAAA---TGGTGGTTATT----AGTCACTCCATGCCCCATTCCAGGATACTGAGGACAGTTT-CCACAGCCCTTCT-GTTCCATTACAGATCTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60908091 215 + 169600520 cacctgggttagaattctgagtctttcagtagttatgtcactttgggcac-tttgt-aacctctgtgagcctatttgctcatctg---------------------------------------tG----------------------------------------CAAGCATTAAAATCATGTGATGTACTTAGCACAAAAAGTAGTCGATAAA---TGGTGGTTATT----AGTCACTCCATCCCCCATTCCAGGATACTGAGGACAGCTT-CCACAGCCCTTCT-GTTCCATTACAGATCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108434832 216 - 171882078 cacctgggttagaattctgagtctttcagtagttatgtcactttgggcac-tttgt-aacctctgtgagcctatttgctcatctg---------------------------------------tG----------------------------------------CAAGCATTAAAATCATGTGATGTACTTAGCACAAAAAGTAGTCGATAAA---TGGTGGTTATT----AGTCACTCCATCCCCCATTCCAGGATACGGAGGACAGCTTCCCACAGCCCTTCT-GTTCCATTACAGATCTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        48204 215 -   2311642 cacctgggttagaattctgagtctttcagtagttatgtcactttgggcac-tttgt-aacctctgtgagcctatttgctcatctg---------------------------------------tG----------------------------------------CAAGCATTAAAATCATGTGATGTACTTAGCACAAAAAGTAGTCGATAAA---TGGTGGTTATT----AGTCACTCCATCCCCCATTCCAGGATACTGAGGACAGCTT-CCACAGCCCTTCT-GTTCCATTACAGATCTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        43768 215 -   1987038 cacctgggttagaattctgagtctttcagtagttatgtcactttgggcac-tttgt-aacctctgtgagcctatttgctcatctg---------------------------------------tG----------------------------------------CAAGCATTAAAATCATGTGATATACTTAGCACAAAAAGTAGTCGATAAA---TGGTGGTTATC----AGTCACTCCATCCTCCATTCCAGGATACTGAGGACAGCTT-CCACAGCCCTTCT-GTTCCATTACAGATCTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21124057 215 -  24206276 gacctgggttagaattctgagtcttccagtagttatgtcactttgggcac-tttgt-aacctctgtgagcctatttgctcatctg---------------------------------------tG----------------------------------------CAAGCATTAAAATCATGTGATGTACTTAGCACCAAAAGTAGTCGATAAA---TGGTGGTTATT----AGTCACTCCATCCCCCATTCCAGGATACTGAGGACAGCTT-CCACAGCCCTTCT-GTTCCATTACAGATCTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        46866 215 -   1397330 cacctgggttagaattctgagtctttcagtagttatgtcactttgggcac-tttgt-aacctctgtgagcctatttgctcatctg---------------------------------------tG----------------------------------------CAAGCATTAAAATCATGTGATGTACTTAGCACAAAAAGTAGTCGATAAA---TGGTGGTTATT----AGTCACTCCATCCTCCATTCCAGGATACTGAGGACAGCTT-CCACAGCCCTTCT-GTTCCATTACAGATCTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        62652 215 -   1784207 gacctgggttagaattctgagtcttccagtagttatgtcactttgggcat-tttgt-aacctctgtgagcctacttgctcctctg---------------------------------------tG----------------------------------------CAAGCATTAAAATCATGTGATGTACTTAGCACAAAAAGTAGTCAATAAA---TGGTGGTTATT----AGTCACTCCATCCCCCATTCCAGGATACTGAGGACAGCTT-CCACAGCCTTTCT-GTTCCATTACAGATCTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22265323 216 + 158406734 gacctgggttagaattctgagtcttccagtagttgtgtcactttgggcac-tttgtaaacctctgtgagcctatttcctcatctg---------------------------------------tg----------------------------------------caagcattaaaataatgtgatatacttagcacaaaaagtagttgATAAA---TGGTGGTTATT----AGTCATTCTATCCCCCATTCTGGGATACTGAGGACAGCTT-CTACAGCCCTGCT-GTTCCATTACAGATTTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50496378 215 +  54856640 gacctgggttagaattctgagtcttccagtagttgtgccactttgggcac-ttcgt-aacctctgtgagcctatttcctcatctC---------------------------------------TG----------------------------------------CAAGTATTAAAATCATGTGATATACTTAGCACAAAAAGTAGTCGATAAA---TGGTGGTTGTC----AGTCATTCTATCCCCCAGTCTGGGATACTGAGGACAGCTT-CTATAGCCCTGCT-GTTCCATTACAGATCTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       639405 215 -   2910086 gacctgggttagaattttgagtcttccagtagttgtgtcactttgggcac-tttgt-aacctctgtgagcctatttcctcatctg---------------------------------------tG----------------------------------------CAAGCATTAAAATCATGTGATATACTTAGCACAAAAAGTAGTCGATAAA---TGGTGGTTATT----AGTCATTCTATCCCCCATTCTGGAATACTGAGGACAGCTT-CTACAGCCCTGCT-GTTCCATTATAGATCTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40666994 215 +  42888418 gacctgggttagaattctgagtcttccagtagttgtgtcactttgggcac-tttgt-aacctctgtgagcctatttcctcatctg---------------------------------------tG----------------------------------------CAAGCATTAAAATCATGTGATATACTTAGCAcaaaaagtagtcgataaa---tggtggttatt----agtcattctatcccccattctgggatactgaggacagctt-ctacagccctgct-gtTCCATTATAGATTTT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113290222 215 + 116334831 gacctgggttggaattctgggtctgccagtagttgtatcacttttagcac-tttgt-gacctgtgtgtgcctatttcctcatctg---------------------------------------tG----------------------------------------CAAACATTAAAATCATGTGATGTACTTAGCACAAAAAGTAGTCGATAAA---TGGTAGCTATT----AGTCACTCCATCCCCCATCCCAGGAAATCAAGGACAGCTT-CCACAGCCCTGCT-GTTCTATTATAGGTCTT
i micMur3.chr9              I 97 C 0
s proCoq1.NW_012142813v1        35230 215 +     80520 gacctgggttggaattctgagtctgccagtagttgtatcacttttggcat-tttgt-gacctctgtgagcctatttcctcatctg---------------------------------------tg----------------------------------------caaacattaaaatcatgtgatgtacttagcacaaaaagtagtcgATAAA---TGGTGGCTATT----AGTGACTCCATCCCCCAGCCCAGGAAATCGAGGACAGCTT-CCACAGCCCTGCT-GTTCTATTATAGGTCTT
i proCoq1.NW_012142813v1    I 2 C 0
s otoGar3.GL873530             652042 211 -  36342412 gaactaggttggagttctgggtctgccagtagctgcatcacttttgggac-tttgt-gacctctgtgagcttatttcctcctctg---------------------------------------tG----------------------------------------CAAACATCAAAATCATGTGATATACTTAGTACAAAAAGTAGTCGATAAA---TAGTGGCTATTAGTCAGTCACTCCATTTCCCATCCCAGGAAATCAAGGACAGCTT-CCACAGTC---------CTATTACAGGTATT
i otoGar3.GL873530          I 1 C 0
s mm10.chr7                  81369118 188 + 145441459 CACCAGGTTTGGAATGCTTAGACAGACAATAG--ATGCCACTTTGTGTACTTTTGC-AAGTT-----------TTTCCTCATCTG---------------------------------------TA----------------------------------------CAAGCACTAAAATCATGTGCTATGTTCAGCATTAAAAA-AATTAAGATA---TGTTGGCTGTA----TATCACTTCATTCCTCAACATGGGG--------------T-ATATAGCCTTGAC-ATACTATTAAAGGACCT
i mm10.chr7                 I 2 I 196
s canFam3.chr3               54428788 247 +  91889043 gacctggg-tagaatcctga---------cagctttgtgatttctggtat-ttcac-aacctctgtgagcctacctcctcacctttacaatagaagtaatgcccatacctgcttcacaggactctg----------------------------------------caagcattaaaatcacatgatggactttgcataggaagcagctggtagatagtggtggttatt----agtcactctatCCCCCATCCTGAGGTATTGAGGACAGCTT-TCAGAGTCCTGCT-GTTCCATTACAGGACTT
i canFam3.chr3              I 2 C 0
s dasNov3.JH570731            1823919 241 +   3943991 -----------gaattcctggtctgccaacag-tgtgtcacttttgatac-ttcaa-aacctctatgatcctatttcctcatctg---------------------------------------taagatagaaataataatagtatgtatatcacagggctgtgttaagcacaaaaatcacacgaagtacttagcat---aAGGAGTTGATAAA---CGGTGGCTTTT----AGTCACCCCACCTCCCATTCTAGGATATTGAGGACAGTTT-CCATAGCTCTGCTGGTTCCATTATAGGAATT
i dasNov3.JH570731          C 0 C 0

a score=535767.000000
s hg38.chr15_KI270850v1_alt    357443 38 +    430880 AAGACATTGC-AAGCAGGACAAGGGTAGCCCTGGACATG
s panTro5.chr15              63510846 38 +  83230942 AAGACATTGC-AAGCAGGACAAGGGTAGCCCTGGACATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80467937 38 +  99763055 AAGACATTGC-AAGCAGGACAAGGGTAGCCCTGGACATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        68121 38 -   1709092 AAGACATTGC-AAGCAGGACAAGGGTAGCCCTGGAAATG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17227573 38 - 121039945 AAGACATTGC-AAGCAGGACAAGGGTAGCCCTGGACATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60908306 39 + 169600520 AAGACATTGCTAAGCAGGACAAGGGTAACCCTGGACATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108435048 39 - 171882078 AAGACATTGCTAAGCAGGACAAGGGTAACCCTGGACATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        48419 39 -   2311642 AAGACATTGCTAAGCAGGACAAGGGTAACCCTGGACATG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        43983 39 -   1987038 AAGACACTGCTAAGCAGGACAAGGGTAACCCTGGACATG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21124272 39 -  24206276 AAGACATTGCTAAGCAGGACAAGGGTAACCCTGGACATG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        47081 39 -   1397330 AAGACACTGCTAAGCAGGACAAGGGTAACCCTGGACATG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        62867 39 -   1784207 AAGACATTTCTAAGCAGCACAAGGGTAGCCCTGGACATG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22265539 37 + 158406734 AAGACATTGC-AAGTAGGACAAGGGCAGCCCTGGACAT-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50496593 37 +  54856640 AAGACATTGC-AAGCAGGATAAGGGCAGCCCTGGACAT-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       639620 37 -   2910086 AAGACATTGC-AAGCAGGACAAGGGCAGCCCTGGACAT-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40667209 37 +  42888418 AAGACATTGC-AAGCAGGACAAGGGCAACCCTGGACAG-
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113290437 38 + 116334831 AAGATACTGC-AAACTAGACAAGGGTAACCCTGGACACG
i micMur3.chr9              C 0 I 11
s proCoq1.NW_012142813v1        35445 38 +     80520 AAGATACTGC-AAGCTGGACAAGGGCAGCCCTGGACACG
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             652253 38 -  36342412 CAGATACTGC-AAGCTGGACAAGGGTAGCCCTGCACACG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54429035 36 +  91889043 AAGACACTGC-CAGGAAGACAAAGGTAGTGCTGGACA--
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1824160 37 +   3943991 -ACACAGAGC-AAGCAGGATAAAGGTAGCTCTGGACACA
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81369306 196 + 145441459 I

a score=280714.000000
s hg38.chr15_KI270850v1_alt    357481 30 +    430880 AGAAAGGGTAGCACTGGGG--TATGAGAAAAA--
s panTro5.chr15              63510884 30 +  83230942 AGAAAGGGTAGCACTGGGG--TATGAGAAAAA--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80467975 30 +  99763055 AGAAAGGGTAGCACTGGGG--TATGAGAAAAA--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        68159 30 -   1709092 AGAAAGGGTAGCACTGGGG--TATGAGAAAAA--
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17227611 30 - 121039945 AGAAAGGGCAGCACTAGGG--TATGAGAAAAA--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60908345 30 + 169600520 AGAAAGGGTAGCACTGGGG--TATGAGAAAAA--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108435087 30 - 171882078 AGAAAGGGTAGCACTGGGG--TATGAGAAAAA--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        48458 30 -   2311642 AGAAAGGGTAGCACTGGGG--TATGAGAAAAA--
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        44022 30 -   1987038 AGAAAGGGTAGCACTGGGG--TATGAGAAAAA--
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21124311 30 -  24206276 AGAAAGGGTAGCACTGGGG--TATGAGAAAAA--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        47120 30 -   1397330 AGAAAGGGTAGCACTGGGG--TATGAGAAAAA--
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        62906 30 -   1784207 AGAAAGGGTAGCACTGAGG--TATGAGAAAAA--
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22265576 23 + 158406734 -------GTACCACTGGGG--TATGAGAAAAA--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50496630 23 +  54856640 -------GTACCACTGGGG--TATGAGAAAAA--
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       639657 23 -   2910086 -------GTACCACTGGGG--TATCAGAAAAA--
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40667246 23 +  42888418 -------GTACCACTGGAG--TATGAGAAAAA--
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        35483 11 +     80520 --------TGCCACTGGGG---------------
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             652291 24 -  36342412 --------AGCCATTGGGGTCTCCAAGAAGAA--
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54429071 17 +  91889043 -------------CTGGGG--TCTCAGGGAAA--
i canFam3.chr3              C 0 I 2
s dasNov3.JH570731            1824197 24 +   3943991 --------TGCCTTTAGGG--TATTAGAGAAAAA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113290475 11 + 116334831 I
e mm10.chr7                  81369306 196 + 145441459 I

a score=4651726.000000
s hg38.chr15_KI270850v1_alt    357511 371 +    430880 CGCACTTATAACACTCATCTTGCCCCCAAAGTCTTCCTCCCCATCAA--GGGATAGTGCCTCAGGGTAGGCACAGTCTAGAAGAGAAGGACCCCACAAAGTGTTACATC----CAAGCCCATGCAGGCCTTGCAGGTACAATTCTCAA-AAACAGACTCTATCCCAGGGTCTTCTTGCAGG-ACTCTGAGGCCAAGGAAATCTAGATAGCAGAAGTACTCTGGCCCCTGGAGAATGGTATCCATGTACCAGCCTAAAGCTAAGAATCCAATGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAAAATGAAAG-CCCCTATCATAGCAG-----ATGC----AGCACTCGGTATAC-CTCCTCATTTGTtttcctttgatagccac
s panTro5.chr15              63510914 371 +  83230942 CGCACTTATAACACTCATCTTGCCCCCAAAGTCTTCCTCCCCATCAA--GGGGTGGTGCCTCAGGGTAGGCACAGTCTAGAAGAGAAGGACCCCACAAAGTGTTACATC----CAAGCCCATGCAGGCCTTGCAGGTACAATTCTCAA-AAACAGACTCTATCCCAGGGTCTTCTTGCAGG-ACTCTGAGGCCAAGGAAATCTAGATAGCAGAAGTACTCTGGCCCCTGGAGAATGGTATCCATGTACCAGCCTCAAGCTAAGAATCCAATGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAAAATGAAAG-CCCCTATCATAGCAG-----ATGC----AGCACTCGGTATAC-CTCCTCATTTGTTTTCCTTTGATAGCCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80468005 371 +  99763055 CGCACTTATAACACTCATCTTGCCCCCAAAGTCTTCCTCCCCATCAA--GGGGTGGTGCCTCAGGGTAGGCACAGTCTAGAAGAGAAGGACCCCACAAAGTGTTACATC----CAAGCCCATGCAGGCCTTGCAGGTACAATTCTCAA-AAACAGACTCTATCCCAGGGTCTTCTTGCAGG-ACTCTGAGGCCAAGGAAATCTAGATAGCAGAAGTACTCTGGCCCCTGGAGAATGGTATCCATGTACCAGCCTCAAGCTAAGAATCCAATGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAAAATGAAAG-CCCCTATCATAGCAG-----ATGC----AGCACTCGGTATAC-CTCCTCATTTGTTTTCCTTTGATAGCCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        68189 371 -   1709092 CGCACTTATAACACTCATCTTGCCCCAAAAGTCTTCCTCCCCATCAA--GGGGTGGTGCCTCAGGGTAGGCACCGTCTAGAAGAGAAGTACCCCACAAAGTGTTACATC----CAAGCCCATGCAGGCCTTGCAGGTACAATTCTCAA-AAACAGACTCTATCCCAGGGTCTTCTTGCAGG-ACTCTGAGGCCAAGGAAATCTAGATAGCAGAAATACTCTGGCCCCTGGAGAATGGTATCCATGTACCAGCCTCAGGCTAAGAATCCAATGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAAAATGAAAG-CCCCTATCACAGCAG-----ATGC----AGCACTCGGTATAC-CTCCTCATTTGTTTTCCTTTGATAGCCAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17227641 380 - 121039945 CGCACTTATAACACTCATCTTGCCCCAAAAGGCTTCCTCCCCATCAA--GGGGTGGTGCCTCGGGGTAGGCACAGTCTAGAAGAGAAGGACCCCACAAAGTGTTACATCCAAGCAAGCCCATGTAGGCCTTGCAGGTACAATTCTCAA-AAACAGACTCTATCCCAGGGTCTTCTTGCAGG-ACTCTGAGGCCAAGGAAATCTAGATAGGAGAAATACTCTGGCCCCTGGAGAATGGTATCCATGTACCAGCCTCAAGCTAAGAATCCAATGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAAAATGAAAG-cccctatcatagcagctatcatgc----agcactcggtatac-ttcctcatttgttttcctttgatagccat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60908375 365 + 169600520 TGCAC-TATAACACTAATCTTGCCCCACAAGGCTTTCTTTCCATCAA--GGGATGGTGCCTCAGGGTAGGCACAGTCTAGAAGAGAAAGACCCC----------ACATC----CAAGCCCATGCAGACCTTGCAGGTACAATTCTCAA-AAACAGACTCTATTCCAGGGTCTTCTTGCGGG-ACTCTGAGGCTAAGGAAATCTAGATAGCAGAAGTACTCTGGCCCCTGGACAATGGTATCCACGTACTAGCCTCAAGCTAAGAATCCAATGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAACATGAAAG-cccctatcatagtagctatcatgt----agcacttggtatac-ttcttcatttcttttccttttatagctat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108435117 365 - 171882078 CGCAC-TATAACACTAATCTTGCCCCACAAGGCTTTCTTTCCATCAA--GGGATGGTGCCTCAGGGTAGGCACAGTCTAGAAGAGAAAGACCCC----------ACATC----CAAGCCCATGCAGACCTTGCAGGTACAATTCTCAA-AAACAGACTCTATTCCAGGGTCTTCTTGCGGG-ACTCTGAGGCTAAGGAAATCTAGATAGCAGAAGTACTCTGGCCCCTGGACAATGGTATCCACCTAATAGCCTCAAGCTAAGAATCCAATGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAACATGAAAG-cccctatcatagtagctatcatgt----agcacttggtatac-ttcttcatttcttttccttttatagctat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        48488 365 -   2311642 CGCAC-TATAACACTAATCTTGCCCCACAAGGCTTTCTTTCCATCAA--GGGATGGTGCCTCAGGGTAGGCACAGTCTAGAAGAGAAAGACCCC----------ACATC----CAAGCCCATGCAGACCTTGCAGGTACAATTCTCAA-AAACAGACTCTATTCCAGGGTCTTCTTGCGGG-ACTCTGAGGCTAAGGAAATCTAGATAGCAGAAGTACTCTGGCCCCTGGACAATGGTATCCACGTACTAGCCTCAAGCTAAGAATCCAATGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAACATGAAAG-cccctatcatagtagctatcatgt----agcacttggtatac-ttcttcatttcttttccttttatagctat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        44052 365 -   1987038 CGCAC-TATAACACTAATCTTGCCCCACAAGGCTTTCTTTCCATCAA--GGGATGGTGCCTCAGGGTAGGCACAGTCTAGAAGAGAAAGACCCC----------ACATC----CAAGCCCATGCAGACCTTGCAGGTACAATTCTCAA-AAACAGACTCTATTCCAGGGTCTTCTTGCGGG-ACTCTGAGGCTAAGGAAATCTAGATAGCAGAAGTACTCTGGCCCCCGGAGAATGGTATCCACGTACTAGCCTCAAGCTAAGAATCCAATGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAACATGAAAG-cccctatcatagtagctatcatgt----agcacttggtatac-ttcttcatttcttttccttttatagctat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21124341 364 -  24206276 CGCAC-TATAACACTCATCTTGCCCCACAAGGCTTTCTTTCCATCAA--GGGATGGTGCCTCAGGGTAGGCACAGTCTAGAAGAGAAAGACCCC----------ACATC----CAAGCCCATGCAGACCTTGCAGATACAATTCTCAA-AAACAGACTCTATTCCAGGGTCTTCTTGCGGG-ACTCTGAGGCTAAGGAAATCTAGATAGCA-AAGTACTCTGGCCCCTGGAGAATGGTATCCACCTACTAGCCTCAAGCTAAGAATCCAATGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAAAATGAAAG-cccctatcatagtagctatcatgt----agcacttggtatac-tttttcatttcttttccttttatagctat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        47150 365 -   1397330 CGCAC-TATAACACTAATCTTGCCCCACAAGGCTTTCTTTCCATCAA--GGGATGGTGCCTCAGGGTAGGCACAGTCTAGAAGAGAAAGACCCC----------ACATC----AAAGCCCATGCAGACCTTGCAGGTACAATTCTCAA-AAACAGACTCTATTCCAGGGTCTTCTTGCGGG-ACTCTGAGGCTAAGGAAATCTAGATAGCAGAAGTACTCTGGCCCCCAGAGAATGGTATCCAGGTACTAGCCTCAAGCTAAGAATCCAATGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAACATGAAAG-cccctatcatagtagctatcatgt----agcacttggtatac-ttcttcatttcttttccttttatagctat
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        62936 365 -   1784207 CACAC-TATAACACTCATCTTGCCCCACAAGGCTTTCTTTCCATCAA--GGGATGGTGCCTCAGGGTAGGCACAGTCTAGAAGAGAAAGACCCC----------ACATC----CAAGCCCATGCAGACCTTGCAGGTACAATTCTCAA-AAACAGACTCTATTCCAGGGTCTTCTTGCAGG-ACTCTGAGGCCAAGGAAATCTAGATAGCAGAAGTACTCTGGCCCCTGGAGAATGGTATCCACGTACCAGTCTCAAGCTAAGAATCCAATGAAAGGTTGTTACAATGAAGA--------------------------------------------------AAATCCTTAGGGGAAAAAATAAAAG-cccctatcatagcagctatcatgt----agcacttggtatac-ttcttcatttcttttcctttgatagctac
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22265599 376 + 158406734 CGCACTTATAACACTCATCTAGCCCTGAAAGCCTTCCTCCCCAACAA--GGGGTGGTGCCACACGGTAGGCACAGTCTAGAAGAGAAGGACCCCACAAAGTGTTACATC----CAAGCTCATGCAGGCCTTGCAGGTACAATT-TCAA-AAACAGA--CTATTCCAGGGTCTTCTTGCAGG-ACTATGAGGCCAAGGAAATCTAGACAGCAGAAGTATTCTGGCTCCTGGAGAATGGTATCCATGTACCAGCCTCAAGCTGAGAATCTGATGAAAGGTTGTTACAATGAAGA--------------------------------------------------CAATCCTTAGAGGAAAACATGGAAG-cccctattatagcagctaccatatagcaagcacttggtatat-tttctcatttgttttcctttgacag-cat
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50496653 375 +  54856640 TGCACTTATAATACTCATCTAGCCCTGAAAGCCTTCCTCCCCAGGAAGGGGGGTGGTGCCAAATGGTAGGCACCATCTAGAAGAGAAGGACCCCACAAAGTGTTACATC----CAAGCTCATGCAGGCCTTGCAGGTACAATT-TCAA-AAACAGG--TTATTCCAGGGTCTTCTTGCAGG-ACTACGAGGCCAAGAACATCTAGACAGCAGAAGTACTCTGGCTCCTGGAGAATGGTATCCATGTACCAGCCTCAAGCTGAGAATCCGATTAAAGGTTGTTACAATGAAGA--------------------------------------------------CAATCCTTAGACGAAAAAATGGAAG-cccctatcatagcagctatcatat----agcacttggtatac-tttctcatttgttttcctttgacagccat
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       639680 374 -   2910086 CGCACATATAATACTCATCTAGCCCTGAAAGCCTTCCTCCTCAGCAA--GGGGTGGTGCCACATGGTAGGCACAGTCTAGAAGAGAAGGACCCCACAAAGTGTTACATC----CAAGCTCATGCAGGCCTTGCAGGTACAATT-TCAA-AAACAGA--CCATTCCAGTGTCTTCCTGCAGG-ACTATGAGGCCAAGGAAATCTAGACTGCAGAAGTACTCTGGTTCCTGGAGAATGGTATCCATGTACTAGCCTCAAGCTGAGAATGTGATGAAAGGTTGTTACAATGAAGA--------------------------------------------------CAATCCTTAGAGGAAAAAATGGAAGCcccctatcatagcagctatcatat----agcacttggtatac-tttctcatttgttttcctttgacagccat
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40667269 373 +  42888418 CGCACTTATAATACTCATCTAGCCCTGAAAGCCTTCCTCCCCAGCAA--GGGGTGGTGCCACACGGTAGGCACAGTCTAGAAGAGAAGGACCCCACAAAGTGTTACATC----CAAGTTCATGCAGGCATTGCAGGTACAATT-TCAA-AAACAGA--CTATCCCAGGGTCTTCTTGCAGG-ACTATGAGGCCAAGGAAATCTAGATAGCAGAAGTACTCTGGCTCCTGGAGAATGGTATCCATGTACCAGCCTCAAGCTGAGAATCCGAAGAAAGGTTGTTACAATGAAGA--------------------------------------------------CAATCCTTAGAGGAAAAAATGGAAG-cccctatcatagcagctatcatat----agcacttggtacac-tttctcatttgttttcctgtgacagccat
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113290486 338 + 116334831 CACACTTCTAACATTCATCTTGCCCTTAAAGGCTTCCTCCCCAGCAA--GGGGTGGGGCCTCAGGATGTGCACAGTCTAGAAAGGAAGGACCCGACAGAGTGCCACATC----CAAATTCATGCTGGCCTTGGGGGCACAATTTTCCA-----AGACTCCACCCCAGGATCTTC-------------------------------ACAGCAGAAGCACTCTGGCCCCTGAAGAATGGTATCCATATGCCAGGCTCATGACT----TCCAATGGAAGGTTGTCACGGTGCACA--------------------------------------------------AAATCCTTACGGGAGGAAACGGAAG-TCCCTATTATAGCAGCTATCGTGC----AGCATTTGGCATGT-GTTCTCATTTGTTTTCCCTTGATAGTCAT
i micMur3.chr9              I 11 C 0
s proCoq1.NW_012142813v1        35494 328 +     80520 CACACTGCTAACATTCATCTCGCCCTTCAAGGCTTCCTCCCCAGCAA--GGGGTGGGGCCTCAGGACATG--CAGTCTAGAAAGGAAGGACCCCACAGAGTGCCACATC----CAAATCCATGCTGGCCTTGGGGGCACAACTCTCCA-----AGACTCCACCCCAGGATCTTC-------------------------------ACAGCAGAAGCACTCTGGCCCCTGAAGAACGGTATCCATATACCAGGCTCATGCTGAGAATCCAATGGAAGGTTGTCCCAGTGTACA--------------------------------------------------AAATCCTTACGGGAGAAAACGAAAG-TCCCTATCGCAGTAACTATCATGC----AGTATTTGGTA-------------CGTTTTCCCAAGATAGTCAT
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             652315 334 -  36342412 TACACTTCTACCACTCATCTTGCCCTGAAAGGCTTCCTCCCCAGCAA-------GAAGCCTTGGGATATG--CAGTCTAGAAGGAAAGGACCTTACAGAGTGCCAGATC----CAAATCCATGCTGGCCTTGGGAGCACA--TACTCAGAAACAGACTCCA-CCCAGGATCTTC-------------------------------ACAGCTGAATCCCTCT-GTCCCTGAAGAATAGTGCCC-CCTATGAGCCTCATGCTGAGAACACAGTGAAAGGTTGTCCCAGTACACA--------------------------------------------------AAACCTGTGTTCAAGAAGATGGGAG--CCCTCTCTCAGCAGCTGTCATGC----GGCACTTGGCACAC-TTTCCCATTTGTTTCCTCTTTATAGTCAT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54429090 426 +  91889043 TCCACCTCTAACATTCATTTT-TCCCAAAGGGCTCCCCTCCCATCAA--GAGGTGAGGCCACAAGGTAGGCATAGCCTAG-AGGGAGGGACTCCACGAAGTGCCATATC----CCAACCAACGCTGGCCTCGCAGGCACAAATCTCAA-AACCAGATTCCACTTCAGGGTCTTCATGCAGACCCTCTGAGGCCAATGGAACCCATGTAGCAGAAAGACCCAAGCCCCTTGAGAAAGGTCTCCAGGTACCAGCCTCATGCTGAGAACCCAATGAAAGATTGTCCCTATacacacacacacacacacacacacacacacacacacacacacaaaaacacacacCAAATCCTTAGGGGAGAAAATGGAAG-CACCCATTGTAGCAACTATTATGT----TGCATTTGGTATACTTTTCTCACCTATTTTCCCTTCATAGTCAT
i canFam3.chr3              I 2 C 0
s dasNov3.JH570731            1824221 300 +   3943991 CCCATTTCTAACATTCATTCTGCCTTGAATGGTTTCCTCTCTAGCAA--GATAAATAGCCTTAAGGTAGGTGCAGTCTACAAGAGAGGGATCCTACAAAGTGCCACATC----CAAACCAATGTTGGC----------------TCAA-GGACAGACCCTTCCCTAGGGTCTTCCTGCAG--CTTCTGCAGTCAGTGAAATCTGTACA-------------------------------------------TTTCATGCTGACAACCCGTAGAAAGGCTGTCCCAATGCAAA--------------------------------------------------AAATCCTT--------------AAG-TCCCAAACACAGCAActatcacgc----tgattttggtatgc-ttgcacatctgatctc--tcgatagtcac
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81369306 196 + 145441459 I

a score=3308058.000000
s hg38.chr15_KI270850v1_alt    357882 236 +    430880 ggagattcttaaaggtaacaattttatcttaatcaatgttgtactt---cc--agtgct--------------gcacacaacg---aatgctc-----gacgtt-tgccagatgaatTTAGCCAACA-------------GCCCTACTATCTCCAACCTTG------------------CTC------------ATTACTTAAGAGTGGTAGAAGATGGTCAGATGTGATGCCATAGCTG----CCTTGGGCAATATAT--CACCAAGCAGAGCTCAAGGAATAAGCTTGCATCTTGGTCTCTACACAGAGAC
s panTro5.chr15              63511285 236 +  83230942 Ggagattcttaaaggtaacaattttatcttaatcaatgttgtactt---cc--agtgct--------------gcacacaacg---aatgctc-----gatgtt-tgccagatgaatTTAGCCAACA-------------GCCCTACTATCTCCAACCTTG------------------CTC------------GTTACTTAAGAGTGGTAGAAGATGGTCAGATGTGATGCCATAGCTG----CCTTGGGCAATATAT--CACCAAACAGAGCTCAAGGAATAAGCTTGCATCTTGGTCTCTACACAGAGAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80468376 236 +  99763055 Ggagattcttaaaggtaacaattttatcttaatcaatgttgtactt---cc--agtgct--------------gcacacaacg---aatgctc-----gatgtt-tgccagatgaatTTAGCCAACA-------------GCCCTACTATCTCCAACCTTG------------------CTC------------ATTACTTAAGAGTGGTAGAAGATGGTCAGATGTGATGCCATAGCTG----CCTTGGGCAATATAT--CACCAAACAGAGCTCAAGGAATAAGCTTGCATCTTGGTCTCTACACAGAGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        68560 236 -   1709092 GGAGATTCTTAAAGGTAACAATTTTATCTTAATCAATGTTCTACTT---CC--AGTGCT--------------GCACACAACG---AATGCTC-----GATGTT-TGCCAGATGAATTTAGCCAACA-------------GCCCTACTATCTCCAACCTTG------------------CTC------------ATTACTTAAGAGTGGTAGAAGATGGTCAGATGTGATGCCATAGCTG----CCTTGGGCAATATAT--CACCAAGCAGAGCTCAAGGAATAAGCTTGCATCTTGGTCTCTACACAGAGAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17228021 236 - 121039945 ggagattcttaaaggtaacaattttatcttattcaatgttgtactt---cc--agtgct--------------gcacacaacg---aatgctc-----gatgtt-tgccaaatgaatTTAGCCAACA-------------GCCCTACTATCTCCAACCTTG------------------CTC------------ATTACTTAAGAGTGGTAGAAGATGGTCAGATGTGATGCCACAGCTG----CCTTGGGCAATATAT--CACCAAGCAGAGCTCAAGGAATAAGCTTGCATCTTGGTCTCTACAAAGAGAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60908740 236 + 169600520 ggagattcttaaaggtaacaattttatcttattcaatgttgtactt---cc--agtgct--------------gcacacaacg---aatgctc-----aatgtt-tgccaaatgaatTTAGCCAACA-------------GCCCTACTATCTCCAACCTTG------------------CTC------------ATTACTTAAGAATGGTAGAAGACGGTCAGATGTGATGCCATAGCTG----CCTTGGGCAATGTAT--CACCAAGCAGAGCTCAAGGAATAAGCCTGCATCTTTGTCTTTACAGAGAGAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108435482 236 - 171882078 ggagattcttaaaggtaacaattttatcttattcaatgttgtactt---cc--agtgct--------------gcacacaaca---aatgctc-----aatgtt-tgccaaatgaatTTAGCCAACA-------------GCCCTACTATCTCCAACCTTG------------------CTC------------ATTACTTAAGAATGGTAGAAGACGGTCAGATGTGATGCCATAGCTG----CCTTGGGCAATGTAT--CACCAAGCAGAGCTCAAGGAATAAGCCTGCATCTTTGTCTTTACAGAGAGAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        48853 236 -   2311642 ggagattcttaaaggtaacaattttatcttattcaatgttgtactt---cc--agtgct--------------gcacacaacg---aatgctc-----aatgtt-tgccaaatgaatTTAGCCAACA-------------GCCCTACTATCTCCAACCTTG------------------CTC------------ATTACTTAAGAATGGTAGAAGACGGTCAGATGTGATGCCATAGCTG----CCTTGGGCAATGTAT--CACCAAGCAGAGCTCAAGGAATAAGCTTGCATCTTTGTCTTTACAGAGAGAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        44417 241 -   1987038 ggagattcttaaaggtaacaattttatcttattcaatgttgtacttccacc--agtgct--------------gcacacaacg---aatgctc-----aatgtt-tgccaaatgaatTTAGCCAACA-------------GCCCTACTATCTCCAACCTTG------------------CTC------------ATTACTTAAGAATGGTAGAAGACGGTCAGATGTGATGCCATAGCTG----CCTTGGGCAATGTATCACACCAAGCAGAGCTCAAGGAATAAGCTTGCATCTTTGTCTTTACAGAGACAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21124705 236 -  24206276 ggagattcttaaaggtaacaattttatcttattcaatgttgtactt---cc--agtgct--------------gcacacaaca---aatgccc-----aatgtt-tgccaaacgaatTTAGCCAACA-------------GCCCTACTATCTCCAACCTTG------------------CTC------------ATTACTTAAGAATGGTAGAAGACGGTCAGATGTGATGCCATAGCTG----CCTTGGGCAATGTAT--CACCAAGCAGAGCTCAAGGAATAAGCTTGCATCTTTGTCTTTACAGAGAGAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        47515 239 -   1397330 ggagattcttaaaggtaacaattttatcttattcaatgttgtacttccacc--agtgct--------------gcacacaacg---aatgctc-----aatgtt-tgccaaatgaatTTAGCCAACA-------------GCCCTACTATCTCCAACCTTG------------------CTC------------ATTACTTAAGAATGGTAGAAGACGGTCAGATGTGATGCCATAGCTG----CCTTGGGCAATGTAT--CACCAAGCAGAGCTCAAGGAATAAGCTTGCATCTTTGTCTTTACAGAGAGAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        63301 236 -   1784207 ggagattcttaaaggtaacaattttatctatttctatgttgtactt---cc--agtgct--------------gcacacaacg---aatgctc-----aatgtt-tgccaaatgaatTTAGCCAACA-------------GCCCTACTATCTCCAACCTTG------------------CTC------------ATTACTTAAGAATGGTAGAAGATGGTCAGATGTGATGCCATAGCTG----CCTTGGGCAATGTAT--CACCAAGCAGAGCTCAAGGAATAAGCTTGCATCTTTGTCTCTACAGACAGAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22265975 240 + 158406734 ggagattcttaaaggtaataattttatcttattcattgttttactt---cc--agtgct--------------gcacacaaca---aatgctc-----aatgtt-tcctgaaagaatTTGGCCAAAA-------------GCCCTACTATCTCCAACCTTG------------------CTG------------ATAACTTAAGAGTGGTAGAAGATGGTCAGATGTGATGCCATAGCTGCCTGCCTTGGGCCATATAT--CACCAAGCAGAGCTCAAGGAATAAGCTTGCATCTTGGTCTCTACACAGAGGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50497028 240 +  54856640 ggagattcttaaaggtaataattttatcttattcactgttgtactt---cc--agtgct--------------gcacacaaca---aatgctc-----aatgtt-tcccgaaagaatTTGGCCAAAA-------------GCCCTACTATCTCCAACCTTG------------------CTG------------ATTACTTAAGAGTGGTAGAAGATGGTCAGATGTGATGCCATAGCTGCCTACCTTGGGCCATGTAT--CACCAAGCACAGCTCAAGGAATAAGCTCGCATCTTGGTCTCTACACAGAGGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       640054 240 -   2910086 ggatattcttaaaggtaataattttatcttattcattgttatactt---cc--agtgct--------------gcacacaaca---aatgctc-----aatGTT-TCCCGAAATAATTTGGCCAAAA-------------GCCCTACTATCTCCAACCTTG------------------CTG------------ATTACTTAAGAGTGGTAGAAGATGGTCAGATGTGATGCTATAGCTGCCTGCCTTGGGCCATGTAT--CACCAAGCACAGCTCAAGGAATAAGCTTGCATCTTGGTCTCTACACAGAGGC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40667642 239 +  42888418 ggagattcttaaaggtaataattttatcttattcattgttttactt---cc--agtgct--------------gcacacaaca---aatgctc-----aatgtt-tcctgaaagaatTTGGCCAAAA-------------GCCCTACTATC-CCAACCTTG------------------CTG------------ATTACTTAAGAGTGGTAGAAGATGGTCAGATGTGATGCCATAGCTGCCTGCCTTGGGCCATATAT--CACCAAGCAGAGCTCAAGGAATAAGCTTGCATCTTGGTCTCTACACAGAGGC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113290824 252 + 116334831 GGAGATACTAAAAGGCAA-AATTTTATGCTATTCACTGATGTACCT---GCATAGTGCC--------------ACACATAGCC---AATGCTC-----AGTGTT-TGCAGAACAAATTTAGACAAGA-------------GCCCTACTATCTCTAACCTTG-CCCCCACATTGCTGAATCTG------------AATACTTAGGAGTGGTAGAAGATTGGCATGTGTGATGCCACAGCTG----CCTTGGGCAAAACTT--CACCAAGCAGAGCTGAAGGAATAAGCTTGTACTCTGGCCTCCACAAAGGC--
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        35822 253 +     80520 GGAGATACTAAAAGACAACAATtttatgctattcactgatgtacct---gcacagtgcc--------------acacacagcc---aatgctc-----aatgtt-tgcggaacgaatTTAGACAAGA-------------GCCCTACTATCTCTAACATTG-CCCCGACATTGCTGAATCTG------------AATACTTAAGAGTGGTACAAGATGGGCAGATGTGATGCCATAGCTG----CCTTGGGCAGTATTT--CACCAAGCAGAGCCGAAGGAATAAGCTTGTATCCTGGGCTCCACATAGGC--
i proCoq1.NW_012142813v1    C 0 I 50
s otoGar3.GL873530             652649 236 -  36342412 --AGATACTCAAGGGCAACAATTTTATCCTGTTCATCACCATACCT---CC--AGTGTT--------------GCACACAG-C---AGGGCTT-----CATGTT-CAATGAACAAATTTAGTCAGGA-------------G-CCTACTGCCTGTAACCTCACCCCCCACCCTACTGG--------------------ACATTTGAGTGGTAGAAGGTGGTCAGACACGGTGTCACAGCTG----CCATGGGCCATGCGC--CACCAAACAGAGCC----CAATTAGCTTATTCCCTGGGCTCCACACAGGT--
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81369502 255 + 145441459 GGagcttcttaatgacagtgatttcatcctattcactggcatacct---gc--agtacccaac--agtttctggcacatagtgtgtaatgcccgagtaaatattATAGTCAAAATCTTCAGTCAAGA-------------GCCCTATG--CTCCAACCTTG------------------CCTAATGCACTGTCAAATACTTAAAAGTGGTAGAAGACAGTCAGGTATGGGGCTACAACTT----ACTGGGG--AAGTAT--CATTAACCAGAGTCTAAGCAATAA----------CAGGCTCCACACAGAGAC
i mm10.chr7                 I 196 C 0
s canFam3.chr3               54429516 243 +  91889043 -GGGAtt---------------------ttattcaccaatgtacct---ct--agtgtctaacctagtatttggctcacagcc---aggattc-----aatgct-tgttggataaatTTAGCCAGGATTTTCAGTCAAGGGCCCTGCTATCTCCAACCTTGCCCCCAACATTG------CTA------------AATACTTAACAGTGGCAGGAGATGGTCAAATGTGAAGCCATAGCTG----TGTGGGGCAATATAT--CACCACGGAGAGCCCAAGGAATGGGC--------TGTGCTCCACAGAGAC--
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1824521 251 +   3943991 --agatttttatgggcaataactttatcttatacactgatatacct---cc--agagcctaagacagtacctggcaaacaacc---ag---tt-----aatgtt-tgctgaatgaatTTAGCCAAGATTTTCAGTCAAGAGTCCTCCCATCTCTAAACTTG------------------CTC--------CCCAAATACTC-TGAGTGGTAAAAGATGGTCAGCTGTGAAGCCACAGCTG----CCTGGGGAAATAAGT--CACCAAGCAGAA------GAGTAAGCTTGCGTTCTGGGTCCCACATAG----
i dasNov3.JH570731          C 0 C 0

a score=695104.000000
s hg38.chr15_KI270850v1_alt    358118  57 +    430880 AACAGTGTAACAGGGTATCTGCAAGGATAACTCCGAA-------------------------------------------------------------------------AATGCCCAGAGCTGTTGAAA
s panTro5.chr15              63511521  57 +  83230942 AACAGTGTAACAGGGTATCTGCAAGGATAACTCCGAA-------------------------------------------------------------------------AATGCCCAGAGCTGTTGAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80468612  57 +  99763055 AACAGTGTAACAGGGTATCTGCAAGGATAACTCCGAA-------------------------------------------------------------------------AATGCCCAGAGCTGTTGAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        68796  57 -   1709092 AACAGTGTAACAGGGTATCTGCAAGGATAACTCCGAA-------------------------------------------------------------------------AATGCCCAGAGCTGTTGAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17228257  57 - 121039945 AACAGTGTAACAGGGTATCTGCAAGGATAACTCCGAA-------------------------------------------------------------------------AATGCCCAGAACTGTTGAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60908976  57 + 169600520 AACAGTGTAACAGGGTATCTGCAAGGATAACTTCGAA-------------------------------------------------------------------------AATGCCCAGAGCTGTTGGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108435718  57 - 171882078 AACAGTGTAACAGGGTATCTGCAAGGATAACTTCGAA-------------------------------------------------------------------------AATGCCCAGAGCTATTGGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        49089  57 -   2311642 AACAGTGTAACAGGGTATCTGCAAGGATAACTTCGAA-------------------------------------------------------------------------AATGCCCAGAGCTGTTGGAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        44658  57 -   1987038 AACAGTGTAACAGGGTATCTGCAAGGATAACTCCGAA-------------------------------------------------------------------------AATGCCCAGAGCTGTTGGAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21124941  57 -  24206276 AACAGTGTAACAGGGTATCTGCAAGGATAACTCCAAA-------------------------------------------------------------------------AATGCCCAGAGCTGTTGGAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        47754  57 -   1397330 AACAGTGTAACAGGGTATCTGCAAAGATAACTCCGAA-------------------------------------------------------------------------AATGCCCAGAGCTGTTGGAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        63537  57 -   1784207 AACAGTGTAACAGGGTATCTGCAAGGATAACTCCGAA-------------------------------------------------------------------------AATGCCCAGAGCTGTTGGAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22266215  57 + 158406734 AACAGTGTAACAGGATGTCGGCAACGATAACTACCCA-------------------------------------------------------------------------AATGCCCAAAGCTGTTGAAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50497268  56 +  54856640 AACAGTGTAACAGGATGTCGGCAAGGATAACC-CCCA-------------------------------------------------------------------------AATGCCCAAAGCTGTTGAAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       640294  42 -   2910086 ---------------TGTCGGCAAGGATAACTCCCCA-------------------------------------------------------------------------AATGCCCAAAGCTGTTGAAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40667881  57 +  42888418 AACAGTGTAACAGGATATCGGCAAGGATAACTCCCCA-------------------------------------------------------------------------AATGCCCAAAGCTGTTGAAA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113291076  57 + 116334831 ACCAGGGCACCAGGCTGTCTGCAAGGACAACTCCCAG-------------------------------------------------------------------------GCTGTCTGAAGCTGTTGAAA
i micMur3.chr9              C 0 I 1
s otoGar3.GL873530             652885  57 -  36342412 AAGAGGGCACCAGGCTGTCTGGAAGGACAACTCCCAG-------------------------------------------------------------------------GCTGCCCAAAACTGCTAAAA
i otoGar3.GL873530          C 0 I 1
s mm10.chr7                  81369757  57 + 145441459 AAGAGGATACCAGGCTGCTTGCAAGTACAACTCACAG-------------------------------------------------------------------------GTTTTCTGAAGCTATTGAAC
i mm10.chr7                 C 0 I 1
s canFam3.chr3               54429759  57 +  91889043 AGCCCAGTACCATGCTGTATGCAAGGATAACTCCCAG-------------------------------------------------------------------------ACTGTCCAGAGCTATTGAAA
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1824772 116 +   3943991 --------------GCTTCTGTAAGAATAACTCCCAGACAGCTTCATGTCCTGGGAGACCAAGTCAGAAACTGTTCTTTGACCCCTAGCTCTGCCCTGGAGGAGCAGCACAGTGCCAAGAGCTGGTGAAA
i dasNov3.JH570731          C 0 I 1
e proCoq1.NW_012142813v1        36075  50 +     80520 I

a score=11111121.000000
s hg38.chr15_KI270850v1_alt    358175 714 +    430880 GCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACGGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCC-AGGAGGTAGTACCCTCATGTGGGCTTTCCAAGAAGGCCCAGAGCCCAGGGAAAGAAGAGCAATGGCTGTCACCACAGCTCC-AAAA-CCAAAGGCAACATGACGATTAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAAC-CTGCCTACACAGCCAGATCATACTGC-TGGGGCAACTCTGGTTCTGGTCCTT-ATGAATTCTGAGGCT-CAGGCTGCAGTCCCTCCCTGGTCGACAAAATCATGTAA-TATTTATCACTAAAGTGCTTGGGATGGAAAGTGGAAAAGAAAAACCATTTCTATTTCAGAGACAAACAGCTACAAGCACAGGCCTTTCAGGTGGTGGAGAAGCTGTGGATATTATGACTAGATC----------------------------------C-AAGCTACT--TTTA-ATAGC------------TCAATTTCATAG--------------------TAACTTTCAGACCAAGCTCTCCAAGCCCCCAGTGGGGCACACCTGCATTTCTATGGGCCCAATGTTATAATGTAT-TTCAGAAA-GA-GCATTGTAGCTTAGAGA-ATG-AGAGCCAAAGAAGGGCTA-----TACTTCAACCTGATGCCAATGAAAG
s panTro5.chr15              63511578 714 +  83230942 GCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACGGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCC-AGGAGGTAGTACCCTCATGTGGGCTTTCCAAGAAGGCCCAGAGCCCAGGGAAAGAAGAGCAATGGCTGTCACCACAGCTCC-AAAA-CCAAAGGCAACATGACGATTAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAAC-CTGCCTACACAGCCAGATCATACTGC-TGGGGCAACTCTGGTTCTGGTCCTT-ATGAATTCTGAGGCT-CAGGCTGCAGTCCCTCCCTGGTCCACAAAATCATGTAA-TATTTATCACTAAAGTGCTTGGGATGGAAAGTGGAAAAGAAAAACCATTTCTATTTCAGAGACAAACAGCTACAAGCACAGGCCTTTCAGGTGGTGGAGAAGCTGTGGATATTATGACTAGATC----------------------------------C-AAGCTACT--TTTA-ATAGC------------TGAATTTCATAG--------------------TAACTTTCAGACCAAGCTCTCCAAGCCCCCAGTGGGGCACACCTGCATTTCTATGGGCCCAATGTTATAATGTAT-TTCAGAAA-GA-GCATTGCAGCTTAGAGA-ATG-AGAGCCAAAGAAGGGCTA-----TACTTCAACCTGATGCCAATGAAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80468669 714 +  99763055 GCCTCCTCCCTCACTGAAGCAACTGAGCT--GGCTGGTTTTCAGACGGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCC-AGGAGGTAGTACCCTCATGTGGGCTTTCCAAGAAGGCCCAGAGCCCAGGGAAAGAAGAGCAATGGCTGTCACCACAGCTCC-AAAA-CCAAAGGCAACATGACGATTAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAAC-CTGCCTACACAGCCAGATCATACTGC-TGGGGCAACTCTGGTTCTGGTCCTT-ATGAATTCTGAGGCT-CAGGCTGCAGTCCCTCCCTGGTCCACAAAATCATGTAA-TATTTATCACTAAAGTGCTTGGGATGGAAAGTGGAAAAGAAAAACCATTTCTATTTCAGAGACAAACAGCTACAAGCACAGGCCTTTCAGGTGGTGGAGAAGCTGTGGATATTATGACTAGATC----------------------------------C-AAGCTACT--TTTA-ATAGC------------TGAATTTCATAG--------------------TAACTTTCAGACCAAGCTCTCCAAGCCCCCAGTGGGGCACACCTGCATTTCTATGGGCCCAATGTTATAATGTAT-TTCAGAAA-GA-GCATTGTAGCTTAGAGA-ATG-AGAGCCAAAGAAGGGCTA-----TACTTCAACCTGATGCCAATGAAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        68853 714 -   1709092 GCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACAGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCC-AGGAGGTAGTACCCTCATGTGGGCTTTCCAAGAAGGCCCAGAGCCCAGGGAAAGAAGAGCAATGGCTGTCACCACAGCTCC-AAAA-CCAAAGGCAACATGACGATTAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAAC-CTGCCTACACAGCCAGATCATACTGC-TGGGGCAACTCTGGTTCTGGTCCTT-ATGAATTCTGAGGCT-CAGGCTGCAGTCCCTCCCTGGTCCACAAAATCATGTAA-TATTTATCACTAAAGTGCTTGGGATGGAAAGTGGAAAAGAAAAACCATTTCTATTTCAGAGACAAACAGCTACAAGCACAGGCCTTTCAGGTGGTGGAGAAGCTGTGGATATTATGACTAGATC----------------------------------C-AAGCTACT--TTTA-ATAGC------------TGAATTTCATAG--------------------TAACTTTCAGACCAAGCTCTCCAAGCCCCCAGTGGGGCACACCTGCATTTCTATGGGCCCAATGTTATAATGTAT-TTCAGAAA-GA-GCATTGTAGCTTAGAGA-ATG-AGAGCCAAAGAAGGGCTA-----TACTTCAACCTGATGCCAGTGAAAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17228314 713 - 121039945 GCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACGGAAAGACAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGACTGCATCCTACTCC-AGGAGGTAGTACCCTCATGTGGGCTTTCCAAGAAGGCCCAGAGCCCAGGGAAAGAAGAGCAATGGCTGTCACCACAGCTCC-AAAA-CCAAAGGCAACATGACGATTAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAAC-CTGCCTACACAGCCAGATCATACTGC-TGGGGCAACTCTGGTTCTGGTCCTT-ATGAATTCTGAGGCT-CAGGCTGCAGT-CCTCCCTGGTCCACAAAATCATGTAA-TATTTGTCACTAAAGTGCTTGGGATGGAAAGTGGAAACGAAAAACCATTTCTATTTCACAGACAAACAGCTACAAGCACAGGCCTTTCAGGTGGTGGAGAAGCTGTGGATATTATGACTAGATC----------------------------------C-AAGCTACT--TTTA-ATAGC------------TGAATTTCATAG--------------------CAACTTTCAGACCAAGCTCTCCAAGCCCCCAGTGGGACACACCTGCATTTCTATGGGCCCAATGCTATAATGTAT-TTCAGAAA-GA-GCATTGTAGCTTAGAGA-ACC-AGAGCCAAAGAAGGGCTA-----TACTTCAACCTGATGCCAGTGAAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60909033 707 + 169600520 TCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACAGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCC-AGGAGGTAGTAACCTCATGTGGGCTTTCCAAGAAG-------GCCCAGGGAAAGAAGAGCGATGGCTGTCACCACAGTTCC-AAAA-CCAAAGGCAACATGACGATCAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAAC-CTGCCTACACAGCCAGATCATACCGC-TGGGGCAACTCTGGTTCTGGACCTT-ATGAATTCTGAGGCT-CAGGCTGCAGTCCCTCCCTGGTCCACAAAATCATGTAA-TATTTATCACTAAAGTGTCTGGCATGGAAAGTGGAAAAGAAAAACCATTTATATTTCAGAGACAAACAGCTACAAGCACAGGCCTTTCAGGTGGTGGAGAAGCTGTGGATATTATAACTAGATC----------------------------------C-AAGCTACT--TTTA-ATAGC------------TGAATTTCACAG--------------------CAACTTTCAGACCAGGCTCTCCAAGCCCTAAGTTGGACACACCTGCATTCCTATGGGCCCAATGCTATAATGTAT-TTCAGAAA-GA-GCACTGCAGCTTAGAGA-ACC-AGAGCCAAAGAAGGGCTA-----TACTTCAACCTGATGCCAGTGAAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108435775 707 - 171882078 TCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACAGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCC-AGGAGGTAGTAACCTCATGTGGGCTTTCCAAGAAG-------GCCCAGGGAAAGAAGAGCGATGGCTGTCACCACAGTTCC-AAAA-CCAAAGGCAACATGACGATCAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAAC-CTGCCTACACAGCCAGATCATACCGC-TGGGGCAACTCTGGTTCTGGACCTT-ATGAATTCTGAGGCT-CAGGCTGCAGTCCCTCCCTGGTCCACAAAATCATGTAA-TATTTATCACTAAAGTGTTTGGCATGGAAAGTGGAAAAGAAAAACCATTTATATTTCAGAGACAAACAGCTACAAGCACAGGCCTTTCAGGTGGTGGAGAAGCTGTGGATATTATAACTAGATC----------------------------------C-AAGCTACT--TTTA-ATAGC------------TGAATTTCACAG--------------------CAACTTTCAGACCAGGCTCTCCAAGCCCTAAGTTGGACACACCTGCATTCCTATGGGCCCAATGCTATAATGTAT-TTCAGAAA-GA-GCACTGCAGCTTAGAGA-ACC-AGAGCCAAAGAAGGGCTA-----TACTTCAACCTGATGCCAGTGAAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        49146 707 -   2311642 TCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACAGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCC-AGGAGGTAGTAACCTCATGTGGGCTTTCCAAGAAG-------GCCCAGGGAAAGAAGAGCGATGGCTGTCACCACAGTTCC-AAAA-CCAAAGGCAACATGACGATCAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAAC-CTGCCTACACAGCCAGATCATACCGC-TGGGGCAACTCTGGTTCTGGACCTT-ATGAATTCTGAGGCT-CAGGCTGCAGTCCCTCCCTGGTCCACAAAATCATGTAA-TATTTATCACTAAAGTGTTTGGCATGGAAAGTGGAAAAGAAAAACCATTTATATTTCAGAGACAAACAGCTACAAGCACAGGCCTTTCAGGTGGTGGAGAAGCTGTGGATATTATAACTAGATC----------------------------------C-AAGCTACT--TTTA-ATAGC------------TGAATTTCACAG--------------------CAACTTTCAGACCAGGCTCTCCAAGCCCTAAGTTGGACACACCTGCATTCCTATGGGCCCAATGCTATAATGTAT-TTCAGAAA-GA-GCACTGCAGCTTAGAGA-ACC-AGAGCCAAAGAAGGGCTA-----TACTTCAACCTGATGCCAGTGAAAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        44715 707 -   1987038 GCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACAGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCC-AGGAGGTAGTACCCTCATGTGGGCTTTCCAAGAAG-------GCCCAGGGAAAGAAGAGCGATGGCTGTCACCACAGTTCC-AAAA-CCAAAAGCAACATGACGATCAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAAC-CTGCCTACACAGCCAGATCATACCGC-TGGGGCAACTCTGGTTCTGGACCTT-ATGAATTCTGAGGCT-GAGGCTGCAGTCCCTCCCTGGTCCACAAAATCATGTAA-TATTTATCACTAAAGTGTTTGGCATGGAAAGTGGAAAAGAAAAACCATTTATATTTCAGAGACAAACAGCTACAAGCACAGGCCTTTCAGGTGGTGGAGAAGCTGTGGATATTATAACTAGATC----------------------------------C-AAGCTACT--TTTA-ATAGC------------TGAATTTCACAG--------------------CAACTTTCAGACCAGGCTCTCCAAGCCCTAAGTTGGACACACCTGCATTCCTATGGGCCCAATGCTATAATGTAT-TTCAGAAA-GA-GCATTGCAGCTTAGAGA-ACC-AGAGCCAAAGAAGGGCTA-----TACTTCAACCTGATGCCAGTGAAAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21124998 707 -  24206276 GCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACAGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCC-AGGAGGTAGTACCCTCATGTGGGCTTTCCAAGAAG-------GCCCAGGGAAAGAAGAGCGATGGCTGTCACCACAGTTCC-AAAA-CCAAAGGCAACATGACGATCAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAAC-CTGCCTACACAGCCAGATCATACCGC-TGGGGCAACTCTGGTTCTGGACCTT-ATGAATTCTGAGGCT-CAGGCTGCAGTACCTCCCTGGTCCACAAAATCATGTAA-TATTTATCACTAAAGTGTTTGGCATGGAAAGTGGAAAAGAAAAACCATTTATATTTCAGAGACAAACAGCTACAAGCACAGGCCTTTCAGGTGGTGGAGAAGATGTGGATATTATAACTAGATC----------------------------------C-AAGCTACT--TTTA-ATAGC------------TGAATTTCACAG--------------------CAACTTTCAGACCAGGCTCTCCAAGCCCTAAGTTGGACACACCTGCATTTCTATGGGCCCAATGCTATAATGTAT-TTCAGAAA-GA-GCATTGCAGCTTAGAGA-ACC-AGAGCCAAAGAAGGGCTA-----TACTTCAACCTGATGCCAGTGAAAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        47811 706 -   1397330 GCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACAGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCC-AGGAGGTAGTACCCTCATGTGGGCTTTCCAAGAAG-------GCCCAGGGAAAGAAGAGCGATGGCTGTCACCACAGTTCC-AAAA-CCAAAGGCAACATGACGATCAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAAC-CTGCCTACACAGCCAGATCATACCGC-TGGGGCAACTCTGGTTCTGGACCTT-ATGAATTCTGAGGCT-GAGGCTGCAGTCCCTCCCTGGTCCACAAAATCATGTAA-TATTTATCACTAAAGTGTTTGGCATGGAAAGTGGAAAAGAAAAACCATTTATATTTCAGAGACAAACAGCTACAAGCACAGGCCTTTCAGGTGGTGGAGAAGCTGTGGATATTATAACTAGATC----------------------------------C-AAGCTACT--TTTA-ATAGC------------TGAATTTCACAG--------------------CAACTTTCAGACCAGGCTCTCCAAGCCCTAAGTTGGACA-ACCTGCATTCCTATGGGCCCAATGCTATAATGTAT-TTCAGAAA-GA-GCATTGCAGCTTAGAGA-ACC-AGAGCCAAAGAAGGGCTA-----TACTTCAACCTGATGCCAGTGAAAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        63594 708 -   1784207 GCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACGGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCC-AGGAGGTAGTACCCTCATGTGGGCTTTCCAAGAAG-------GCCCAGGAAAAGAAGAGTGATGGCTGTCACCACAGTTCC-AAAA-CCAAAGGCAACATGACGATCAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAAACATACCCACACTAAC-CTGCCTACACAGCCAGATCACACCGCTTGGGGCAACTCTGGTTCTGGACCTT-ATGAATTCTGAGGCT-CAGGCTGCAGTCCCTCCCTGGTCCACAAAATCATGTAA-TATTTATCACTAAAGTGTTTGGGATGGAAAGTGGAAAAGAAAAACCATTTATATTTCAGAGACAAACAGCTACAAGCACAGGCCTTTCAGGTGGTGGAGAAGCTGTAGATGTTATAACTAGATT----------------------------------C-AAGCTACT--TTTA-ATAAC------------TGAATTTCACAG--------------------CAACTTTCAGACCAAGCTCTCCAAGCCCTAAGCTGGACACACCTGCATTTCTATGGGCCCAATGCTATAATGTAT-TTCAGAAA-GA-GCATTGCAGCTTAGAGA-ACC-AGAGCCAAAGAAGGGCTA-----TACTTCAACCTGATGCCAGTGAAAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22266272 646 + 158406734 GCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACAGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATATTCCCGCAATGCTGGTGAGGGTGCATGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACCCC-AGGAGGCGGAACCTTTGTGTGGGTTTTCCAAGAAGGCCCAGAGCCCAGGGAAAGAAGAGTGATAGCTGTCACCACAGCTCC-AAAA-CCAAAGGCAACACGACGATTAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAGACATACCC---------------ACAGAGCCAGATCATGCTGC-TGGGGCAACTCCGGTTCTGGTCCTT-ATGAATTCTGAGGCT-CAGGCTGCAGTCCCTCCCTGGTCCACAAAATCATGTAG-TATTTATCACTAAAGTGCTTGGCATGGAAAGTGGAAAAGAAAAACCATTTCTATTTCAGACACAAACAGCTACAAGCACAGGTCTGTCAGGTGAT-AGGAAGCTGTGGATATTATGACTAGATC----------------------------------C-AAGCTAC---TTTA-ATAGC------------TGAATTTCACAG--------------------CAACTTTCAAACCAAGCT----AAGCC-------------------------------------------------CTCAGAAA-GA-GCACTGTAGCTTAGAGA-ATC-AGAGCAAAAGAAGGGCTA-----TACTTCAACCTGATACCAGTGAAAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50497324 648 +  54856640 GCCTCCTCCCTCACTGAAGTAACTGAGCT--AGCTGGTTTTCAGATGGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTTC-AGGAGGCGGTACCCTCATGTGGGCTTTCCAAGAAGGCCCAGAGCCCAGGGAAAGAAGAGTGATGGCTGTCACCACAGCTCC-AAAA-CCAAAAGCAACATGACGATTAGGGATGGGTGTGTCCTCAACCCTCAGAAA-GAAGACATACCC---------------ACACAGCCAGATCATGCTGC-TGGGGTAACTCTGGTTCTCGTCCTT-ATGAATTCTGAGGCT-CAGGCTGCAGTCCCTCCCTGGTCCACAAAATCATGTAGTTATTTATCACTAAAGTGCTTGGGATGGAAAGTGGAAAAGAAAAACCATTTCTATTTCAGACACAAACAGCTACAAGCACAGGCCTTTCAGGTGGTGGGGAAGCTGTGGATATTATGACTAGATC----------------------------------C-AAGCTACT--TTTA-ACAGC------------TGAATTTCACAG--------------------CAACTTTCAAACCAAGCT----AAGCC-------------------------------------------------TTCAGGAA-GA-GCACTGCAGCTTAGAGA-ACC-AGAGCAAAAGAAGGGCTA-----CGCTTCAACCTGTTACCAGTGAAAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       640336 653 -   2910086 GCCTCCTCCCTCACTGAAGCAACTGAGCT--AGCTGGTTTTCAGACGGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCC-AGGAGGCGGTACCTTCATGTGGGCTTTCCAAGAAGGCCCAGAGCCCAGGGAAAGAAGAGTGATGGCTGACACCACAGCTCC-AAAA-CCAAAGGCAACATAACGATTAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAGACATACCC---------------ACACAGCCAGATCATGCTGC-TGGGGCAACTCCGGTTCTGGTCCTT-ATGAATTCTGAAGCT-CAGGCTGCAGTCCCTCCCTGGTCCACAAAATCATGTAG-TATTTATCACTAAAGTGCTTGGGATGAAAAGTGGAAAAGAAAAACCATTTCTATTTCAGACACAAACAGCTACAAGCACAGGCCTTTCAGGTGGTGGGGAAGCTGTGGATATTATGACTAGATC----------------------------------C-AAGCTACT--TTTA-ATAGC------------TGAATTTCACAG--------------------CAACTTTCAAACCAAGCT----AAGCC-------------------------------------------------TTCAGAAA-GA-GCACTGTAGCTTAGAGA-ACC-AGAGCAAAAGATGGGCTATACTGTACTTCAACCTGATACTAGGGAAAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40667938 648 +  42888418 GCCTCCTCCCTCACTGAAGCAAGTGAGCT--AGCTGGTTTTCAGACGGAAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGTGAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGTTGCATCCTACTCC-AGGAGGCGGTACCCTCATGTGGGCTTTCCAAGAAGGCCCAGAGCCCAGGGAAAGAAGAGCGATGGCTGTCACCACTGCTCC-AAAA-CCAAAGGCAACATGACGATTAGGGATGGGTGTGTCCTCAACCCTCAGAAAGGAAGACATACCC---------------ACATAGCCAGATCATGCTGC-TGGGGCAACTCCAGTTCTGGTCCTT-ATGAATTCTGAGGCT-CAGGCTGCAGTCCCTCCCTGGTCCACAAAATCATGTAG-TATTTATCACTAAAGTGCTTGGGATGGAAAGTGGAAAAGAAAAACCATTTCTATTTCAGAGACAAACAGCTACAAGTACAGGCCTTTCAGGTGGTGGGGAAGCTGTAGATATTATGACTAGATT----------------------------------C-AAGCTGCT--TTTA-ATAGC------------TGAATTTCTCAG--------------------CAACTTTCAAACCAAGCT----AAGTC-------------------------------------------------TTCAGAAA-GA-GCACTGTAGCTTAGAGA-ACC-AGGGCAAAAGAAGGGCTA-----TACTTCAACCTGATACCAGTGAAAG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113291134 703 + 116334831 ATCTCCTCCCTCCCTGAAG-AACAGAGCT--AGTTGGTTTTCAGATGGGAAGGCAGTGTAGGCACTGGAATGTGGGCTGTATGTTCCTGCATTGCTGGCGAGGGTGTGCAATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTGCATCCTACTCT-GGGAGGCAGTA-------GTGGGTTTTCTGAGATGACCTAGAGCCCAGGGAAAGAAAAGCACTGGCCATCACCACAGCCCC-AAAA-CCAAAGACAACATGGCGATCAGAGATGGGTGTGTCTTCAACCCTCAGAAAGGAAGACATACCCACACTAACCCTGCC--CACAGCCAGGTCATACCAC-TGGGACAACTC----TCTGGTCCTTAAAGAGTTCTGAGACT-CAGATTGCAGTCGCTCCCTGATCCACAAAATCATGTAA-TATTTATCACTAAAGTGTTTGAGATGGAAAGTAGAGAAGAAAAACTATCCCCATTTCAGAGATAAACAGCTACAAGCATAGACCTTTCAGGTGGTGGGGAAGCTGAGGAAATTATGACTGGATC----------------------------------C-AAGCTATT--TTT--ATAGC------------TTAATTTCACAG--------------------TAACTTTCAGACCAATCTTTTCAAGCCCCAAGTTGGGCACACGTACATGTCCATGGGCCCAATGCTATAATATAAATTCAGAAG-GA-TCCTCGTAGCTCAGAGA-AACCAGAGCCAAAGAAGTTCCA-----CATCCCAACCCGATGCCAGTGAAAG
i micMur3.chr9              I 1 I 89
s proCoq1.NW_012142813v1        36125 702 +     80520 ATCTCCTCCCTCCCTGAAGAAACTGAGCT--AGTTGGTTTTCAGATGGGAAGGCAGTGTAGGCACTGGAATGTGGGCTGTATGTTCCTGCATTGCTGGCGAGGGTGTGCAATCTGGCACTGCAGCTGGCTGGTGGGAGGACTGCATCCTACTCC-GGGAGGCAGTA-------GTGGGCTTTCTAAGACGACCTAGAGCCCAGGGAAAGAAGAGCACTGGCCGTCACCACAGCCCC-AACA-CCAAAGACAACATGGCGATTAGGGATGGGTATGTCTTCAAGCCTCAGAAAGGAAGACATACCCACACTAACCCTGCC--CACAGCCAGGTCATACCCC-TGGGGCAACTC----TCTGGTCCTT-AAGAGTTCTGAGAAT-cagactgcagtccctccctgatccacaaaatcatgtaa-tatttatcactaaagtgcttgaagtggaaagtggagaagaaaaactatccccatttcagagacaaacagctacaagcacagacctttcgggtggtgggGAAGCTGAGGAAATTATGACTGGATC----------------------------------C-AAGCTATT--GTT--ATAGC------------TTAATTTCACAG--------------------TAACTTTCAGACCAAGCTTTGCAAGCCCCATGTCGGGCACACCTGCATTTCTATGGGCCCAATGCTGTAATATAAATTCAGAAG-GA-TCCTTGTAGCTAAGAGA-AACCAGAGCCAAAGAAG-TCCA-----CATCCCAACCTGATGCCAGTGAAAG
i proCoq1.NW_012142813v1    I 50 C 0
s otoGar3.GL873530             652943 645 -  36342412 GCCTCCTCCCTCCCTGCAGAGACAGAGCT--GGCTGGTGTACAGCAGG---AGCAGTGTGGGCACTGGCACGTGGGCTGCATGTTCCCTCACTGCTTGCAAGGATGCGCGATCTGGCACTACAGCTGACTGGTGGGAGGCCTGCACCCTACTCC-AGGA-GTAGTACCCT--TGTGGGCTTTCTAAGATGACCTAGAGCTCAAGGGAAGAAGAGCAAAGGCTGTTACCACA-------------AAAGGCAAAATGGTG----------------------------AGGAAGAAAGACATGTCCACACTGATGATGCC--CACAGCCAGATCAGACCAC--AGGGCCACTC----TCTGGTCCTT-GAGAATTCTGAGGCT-CAGACTATAGTCCCTCCCCAATCCATAAAACCATGTAA-TATTTATCACTAAAGTGCTTGAGATGGAAAGCGGAGACAAAAAACTACCCCCATTTCAGAGATAAACTGCTACAAGCACAGGCCTTTTGGATGGTAGGGAAGCTGGGGAAATTATAACCAGAGT----------------------------------C-ACGCTATT--TTT--ATAGC------------CTAATTTCACAG--------------------TAACTTTTGGGCCAAGTTTTTTAAGGCCTAATTTAAGCACACCTGTATTTCTATGGACCCGATGCTATAAT-----TTCAGAAG-GG-TCCTAATAGCTAA---------AGAGCCAAAGAGG-TCCA-----CATCCCAACCTG-----AGTGGAAA
i otoGar3.GL873530          I 1 C 0
s mm10.chr7                  81369815 742 + 145441459 ATCTCCACCCTTCCTCAAGAAACTGA-CTGAAATTGGTTTTCAGATGGAAA-GCAGTGTGGGCACTGGAATGTGGGCTGTTTGTTCCCGCATTACTGGCAAGGGTGCACGATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTCCATCCTACTCT-AGGAGACAGCACCCTCATATGGGCTTTCCACGAAGGCACAAAGCTTAGGAAAAGGAGAA----GGCTACCACCACAGCTCCTAAAG-GCAAACACAGAATGGAGATGTGGAATGAGTATGT-TTTAAGCCCCAGAAAGCAAGAGGTGCTCATGCTAAC-CT--------AGTCAGATCACTGCAC-TGGGGCCAGTC----TCAAGTCTTT-ATACATTCTGAAGTT-CAGACTGCAGCCCTTCCCTAATCCACAAAATCATGTAT-TATTTATTACTAAA-TGCTTGGTATGGAAGGT---AAAGAAAGAC-ACCCCCTTTTCAG--ACTAATAGCTCTAAGATCTGGTTCTTCAGAGGATGGGAACGCTAATACAATCATGCCTAGACCTGGCTTTTCCTTTTATTTtctttccttcctgagac-aaggtcct--gctacattgcccaggttgaccatgaattcctgagcAGACAATTACCTTACTGTACAGCTGTTAGAACAGGCTTTCTAAGCTTCAAGATGGACACATCTAAATTTCCATGGGCCTAG--------------TTCAGAAGCTA-ACTCTGTAGCTAAGACA-AAC-AGGAGGAAAGAAGGGCCA-----CACCCCAA-TTGATGCCAGCCA---
i mm10.chr7                 I 1 C 0
s canFam3.chr3               54429817 706 +  91889043 ACCTCCTCCCTCCCTGAATAAAGTGAGCT--AGTTGATCTTCAGATGGGAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGCAAGGGTGCCCAATCTGGCACTGCAGCTGGCTGGTGGGAGGGCTACATCCTACTCC-AGTAGGCAGTACCCTCATGTGGGCTTTCCGAGAAGGCCCAGAGCTCAGAGAAAGAAGAGCGGTGGCCATCACCAAAGCTTC-AAAATTCAAGAACATCACGAGTGTTAGGGATGCGTGTGTCCTTAAGCCTCAGAAAGAAAGACACAGTCACGCCAGCCCTGCC--CATAGCCAGATCATACCAC-TGGGGCAACCC----TCTGGTCCCT-ATGAATGCTAGGGCCACATACTGAAGTCCCTCCCTGATCCACAAAATCATGTAA-TATTTATCAATAAAGTGCCTGAGATGAAAGGTCAAGAAATAAATCCATCCCTATTCTGGAGACAAGTAGCTGTAAGCACAGGACATTCAGGTAGTATGGAAGCCAGAGAAATTACGGCCAGGTC----------------------------------C-ATCCTATT--TTTTTACAGC------------CCAATTTCACAG--------------------TAGCTTTCAGGCCATGCTTTCCAAGGCCCAAATTGGGTCCTCCTGCAATTTTATG-------TGCTGTAATACTT-TTCAGAAG-GA-CCCCTGTAGTTAAGACAGACC-AGAGACAAGGCAGGGCCA-----CGCCCCAAGCTGGTATCAGTGAAAG
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1824889 699 +   3943991 ATCACCTCTCTCTTTGAGGAAACTGAGCT--AGTCTGACTTCAGATGGGAAGGCAGTGTAGGCACTGGAATGTGGGCTGCATGTTCCCGCATTGCTGGCAAGGGTGCATGATCTGGCGCTGCAGCTGGCTGGTGGGAGGGCTGTGTCCTACTCCAAGGAGGCGGTATCCTCCTGTGGGTCTTATATGGCGGCCCAGAGCTCAGGGAAATAGAGG---TGGCCGTCACCAAGGCTCT-AAAG------GACAACATGGTGATTAGGGATGGGTGTGTCCTCAACCCTGAGAAAGGAAGACATATCCACACTAACCCTGCT--CACAGCCAGATCATGCTGC-TCCGGCAACC-----TCTGGTCTCT-ATGAAATC-GAGGGT-CACAGACCAGCCCCTCCCTGATTCACAAAAGCATGTTA-TACTTACCACTGAAGTGCTTGGGATGGAAGGTAGAGAAGAAAATCCATCCCCATTTCAGGGAAAAACAGCTTCAGGCACAGGTATCTCAGGTGGTGGTAAAGTTGGGGAAATCATGGCCGAACC----------------------------------CTAAGCTATTTATTTT-ACAAC------------CTAATTTCACAG--------------------TAACTTTTGGGCTAAGCTCTCCAAGCCCCAAATCAGGCTGACTTGCATTTCTATGGGCCCACTGCTGTAATACAT-TTCAGAAG-TATTCTTTGTAGCTAAGTGAAACC-AGAGTTATAGAAGGGTGA-----CACGCCAACCTAATACCAA------
i dasNov3.JH570731          I 1 C 0

a score=949981.000000
s hg38.chr15_KI270850v1_alt    358889 77 +    430880 ACAGTGCCT--TGGTCAAACACTGATCACCCACAGACAGGTGCCCATCTCCTGTGTGAGTTCTTCTATCTTTTGCTCAG
s panTro5.chr15              63512292 77 +  83230942 ACAGTGCCT--TGGTCAAACACTGATCACCCACAGACAGGTGCCCATCTCCTGTGTGGGTTATTCTATCTTTTGCTCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80469383 77 +  99763055 ACAGTGCCT--TGGTCAAACACTGATCACCCACAGACAGGTGCCCATCTCCTGTGTGAGTTATTCTATCTTTTGCTCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        69567 77 -   1709092 ACAGTGCCT--TGGTCAAACACTGATCGCCCACAGACAGGTGCCCATCTCCTGTGTGAGTTCTTCTATCTTTTGCTCAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17229027 77 - 121039945 ACAGTGCCT--TGGTCAAACACTGATCGCCCACAGACAGGTGCCCATCTCCTCTGTGAGCTCTTCTATCTTTTGCTCAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60909740 79 + 169600520 ACAGTGCCTTGTGGTCAAACACTGATCGCCCACAGACAGGTACCCATCTCCTGTGTGAGCTCTTCTATCTTTTGCTCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108436482 79 - 171882078 ACAGTGCCTTGTGGTCAAACACTGATCGCCCACAGACAGGTACCCATCTCCTGTGTGAGCTCTTCTATCTTTTGCTCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        49853 79 -   2311642 ACAGTGCCTTGTGGTCAAACACTGATCGCCCACAGACAGGTACCCATCTCCTGTGTGAGCTCTTCTATCTTTTGCTCAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        45422 79 -   1987038 ACAGTGCCTTGTGGTCAAACACTGATCGCCCACAGACAGGTACCCATCTCCTGTGTGAGCTCTTCTATCTTTTGCTCAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21125705 79 -  24206276 ACAGTGCCTTGTGGTCAAACACTGATCGCCCACAGACAGGTACCCATCTCCTGTGTGAGCTCTTCTATCTTTTGCTCAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        48517 79 -   1397330 ACAGTGCCTTGTGGTCAAACACTGATCGCCCACAGACAGGTACCCATCTCCTGTGTGAGCTCTTCTATCTTTTGCTCAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        64302 77 -   1784207 ACAGTGCCT--TGGTCAAACACTGACCGCCCACAGACAGGTACCCATCTCCTGTGTGAGCTCTTCTATCTTTTGCTCAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22266918 77 + 158406734 ACAGTGCCT--TGGTCAAACATTGATCACCTATAAACAGGTGCCCCTCGCCTATGTGAGCTCTTCTATCTTTTGCTCCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50497972 77 +  54856640 ACAGTGCCT--TGGTCAAACACTGATCACCCATAAACAGGTACCTATCTCCTATGTGAGCTCTTGTATCTCTTGCTCCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       640989 76 -   2910086 ACAGTGCCT--TGGTCAAACACTGATC-CCCATAAACAGGTGCAGATCTCCTATGTGAGCTCTTGTATCTCTTGCTCCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40668586 77 +  42888418 ACAGTGCCT--TGGTCAAACATTGATCACCCAGAAACAGGTGCCCATCTCCTATGTGAGCTCTTGTATCTTTTGCTCCA
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        36827 68 +     80520 ----------ATAGTCAAACACTGATCACCCATAGACAAGTGTCCATCTCCTACACGAAC-CTTTTGTCCTTTACTCAG
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             653588 62 -  36342412 ----------------ACACAATGATCACCCACAGACAAGTGACTGTCTCCTCTGGGAGC-CTTTTGTCTTTTACTCAG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81370557 66 + 145441459 -----GCAC--AAATCAGA-ACTGAT-GACCACACACAGGTGCTCATCTCCTGTGTGAGTGCT----TCTTTTGCTCAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54430523 76 +  91889043 ACGGTGCCT--TAGTCAAACATGGATCA-CCACAGACAGATGCCCACCTCCTCTGTGAGCTCTTCTGTCTTCTGGTCAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1825588 34 +   3943991 ---------------------------------AGCTGGGGGCCCATCTCCTATGACGGCTC------------CTCAG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113291837 89 + 116334831 I

a score=100055.000000
s hg38.chr15_KI270850v1_alt    358966 24 +    430880 ATACGGTGGAAGTGAGGACAGGG-G-
s panTro5.chr15              63512369 24 +  83230942 ATACGGTGGAAGTGAGGCCAGGG-G-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80469460 24 +  99763055 ATACGGTGGAAGTGAGGCCAGGG-G-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        69644 24 -   1709092 ATACGGTGGAAGTGAGGACAGGG-G-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17229104 24 - 121039945 ATACAGTGGAAGTGAGGACAGGG-G-
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22266995 24 + 158406734 ATACAGTAGAAGAGAGGACAGGA-G-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50498049 24 +  54856640 ATACAGCAGAAGTGAGAACAGGA-G-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       641065 24 -   2910086 ATACAGTAGCAGTAAGGACAGGA-G-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40668663 24 +  42888418 ATACAGTAGAAGTGAGGACAGGA-G-
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        36895 23 +     80520 ACACAGTGGAAGTGAGACAAGGG---
i proCoq1.NW_012142813v1    C 0 I 3
s otoGar3.GL873530             653650 24 -  36342412 ATACAGAGGAAGTGAGGAAAGAAT--
i otoGar3.GL873530          C 0 I 1
s mm10.chr7                  81370623 24 + 145441459 ATCCTGTAGAAGTAAATAAAAGG-A-
i mm10.chr7                 C 0 I 2
s canFam3.chr3               54430599 20 +  91889043 ATACAGTAGGAGTGAGAGCA------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1825622 25 +   3943991 ATACAGTGGGAGTGAGGATAGAA-CA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113291837 89 + 116334831 I
e colAng1.NW_012117110v1        64379  0 -   1784207 C
e manLeu1.NW_012106908v1        48596  0 -   1397330 C
e chlSab2.chr29              21125784  0 -  24206276 C
e cerAty1.NW_012002657v1        45501  0 -   1987038 C
e macNem1.NW_012011945v1        49932  0 -   2311642 C
e macFas5.chr7              108436561  0 - 171882078 C
e rheMac8.chr7               60909819  0 + 169600520 C

a score=480439.000000
s hg38.chr15_KI270850v1_alt    358990  92 +    430880 AGGCTGGCTTCATAGGCCCCCAAGGTTGGCGTC--AAGAACACACAAAACAAAGTAC--CGT--------------GGTCTCC-AGGCATAGAATACCAAACAGTG--ATACC
s panTro5.chr15              63512393  92 +  83230942 AGGCTGGCTTCATAGGCCCCCAAGGTTGGCGTC--AAGAACACACAAAACAAAGTAC--CGT--------------GGTCTCC-AGGCATAGAATACCAAACAGTG--ACACC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80469484  92 +  99763055 AGGCTGGCTTCATAGGCCCCCAAGGTTGGCGTC--AAGAACACACAAAACAAAGTAC--CGT--------------GGTCTCC-AGGCATAGAATACCAAACAGTG--ACACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        69668  92 -   1709092 AGGCTGGCTTCATAGGCCCCCAAGGTTGGCTTC--AAGAACACATAAAACAAAGTAC--CGT--------------GGTCTCC-AGGCATAGAATACCAAACAGTG--ACACC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17229128  94 - 121039945 AGGCTGGCTTCATAGGCCACCAAGGTTGGCTTC--AAGAATACACAAAACAAAGTAC--CGT--------------GGTCTCC-AGGCATAGAATACCAAACAGTGGTATGCC
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22267019 102 + 158406734 AGGCTGGCTTCATAGGCCACTAAGGTTGGCTTC--AAGAATACACAAAA----GTAT--CGTGCTGTCCAAGCCAAGGTCTCC-AGGCATAGGATACCAAACAGTG--ACACC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50498073 106 +  54856640 AGACTGGCTTCATAGGCCACCAAGGTTGGCTTC--AAGAATACACAAAAAAACGTAT--CATGGTGTCCAAGCCAAGGTCCCC-AGGCATAGGAAACCAAACAGTG--ACACC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       641089 106 -   2910086 AGAGTGGCTTCATAGGCCACCAAGGTTGGCTTC--AAGAATATACAAAAGAAAGTAT--TGTGCTGTCCAAGCCAAGGTCTCC-AGGCATAGGATACCAAACAGTG--ACACC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40668687 106 +  42888418 AGGCTGGCTTCATAGCCCACCAAGGTTGGCTTC--AAGAATACACAAAAGAAAGTAT--CGTGGTGTCCAAGCCAAGGTCTCC-AGGCATAGGATACCAAACAGTG--ACACC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113291926 109 + 116334831 AGGCTGGCTTCACAGGCCACCCAAGTTTGCTTCA-AAGTTCACACAAAAGAAAGTACCACATGGCCTCTAACCCAAGGTATTC-AGGCAAAGAATACCAAACAGTG--ACACC
i micMur3.chr9              I 89 C 0
s proCoq1.NW_012142813v1        36921 107 +     80520 AGGCTGGCTTCACAGGCCACCCAGGTTTGCTTCA-AAGTTCACACAAAAGAAAGTGC--TGTGGCCTCTAAGGCAAGGTATTC-AGACACAGCATACCAAACAGTG--ACACC
i proCoq1.NW_012142813v1    I 3 C 0
s otoGar3.GL873530             653675 100 -  36342412 AACTTGGCTTCACAGACCA-CCAGGTTGGCTTCA-AAGTACACA------AAGGGGT--TGTTACCTCCAAGCCACGGTCTTC-AGGTACAGGGTACTAAATAGTG--GTACT
i otoGar3.GL873530          I 1 C 0
s mm10.chr7                  81370649  71 + 145441459 AGGCTTGTTTCA-----------------------AAGAATACATAAAAGGAAGTAC--TGT--------------GGCCTCCAAAGCAAATGACATTGAATAGTG--ACAC-
i mm10.chr7                 I 2 C 0
s canFam3.chr3               54430619  95 +  91889043 AGGTCAGCTTCATAGGCCAATTGGGTCGACTTCAGAGTACCACATAAAAGCAGAGAC--CACGGCCTCGTAGCCATGATCTCC-AGGCACAGGATACC---------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1825647 108 +   3943991 AGGTCAGCTTCACAGGCTACACACGTTGGCTTCAAAGTGTCACACAAAAGAAACTAC--CAGGGCTTCCAAGCCAAGATCTCC-ATGCACAGGAGACCAAACCTTG--ACACC
i dasNov3.JH570731          C 0 C 0
e colAng1.NW_012117110v1        64379   0 -   1784207 C
e manLeu1.NW_012106908v1        48596   0 -   1397330 C
e chlSab2.chr29              21125784   0 -  24206276 C
e cerAty1.NW_012002657v1        45501   0 -   1987038 C
e macNem1.NW_012011945v1        49932   0 -   2311642 C
e macFas5.chr7              108436561   0 - 171882078 C
e rheMac8.chr7               60909819   0 + 169600520 C

a score=6303677.000000
s hg38.chr15_KI270850v1_alt    359082 394 +    430880 -ATACTTCCTTGCCCAGGGGAACAGGGTAGTTGCTGACCT-------------TTCTGGAAAAACCTGAGTCAGC-----AGAAGGC--CAGT-ACTTCAAGAAACCCTATCT--TAACCCAGAGATAGTTACTTAAGGTAA---------------AGCTC----TCCCCATCCACATCC-----------------ACATAAA----------------------------ACAATTTCAATACCCCTCTCC-------------TAAATGGGGTTTTACCAAAACAACTGGGCATTAAAATGCCTAACAGACA---CAACGGGCCCAGGCTCTGCAAAGCATTCT----------------AAAAAAAGACCTGCGCCAAACAGGGTGGAGGCCACAGAAATCAACAAGACAGTACCTTGCTGCCATGGCTGCCGGTTCCTGGACCA-GGGAGGGA-AGGGAAGGACAGCAGACTTGGTGTTTCCCACTGTCAGTACCAACAGCGAATGGCTG
s panTro5.chr15              63512485 396 +  83230942 -ATACTTCCTTGCCCAGGGGAACAGGGTAGTTGCTGACCT-------------TTCTGGAAAAACCTGAGTCAGC-----AGAAGGC--CAGT-ACTTCAAGAAACCCTATCT--TAACCCAGAGATAGTTACTTAAGGTAA---------------AGCTC----TCCCCATCCACATCC-----------------ACATAAAAC--------------------------ACAATTTCAATACCCCTCTCC-------------TAAATGGGGTTTTACCAAAACAACTGGGCATTAAAATGCCTAACAGACA---CAACGGGCCCAGGCTCTGCAAAGCATTCT----------------AAAAAAAGACCTGCGCCAAACAGGGTGGAGGCCACAGAAATCAACAAGACAGTACCTTGCTGCCATGGCTGCCGGTTCCTGGACCA-GGGAGGGA-AGGGAAGGACAGCAGGCTTGGTGTTTCCCACTGTCAGTACCAACAGCGAATGGCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80469576 396 +  99763055 -ATACTTCCTTGCCCAGGGGAACAGGGTAGTTGCTGACCT-------------TTCTGGAAAAACCTGAGTCAGC-----AGAAGGC--CAGT-ACTTCAAGAAACCCTATCT--TAACCCAGAGATAGTTACTTAAGGTAA---------------AGCTC----TCCCCATCCACATCC-----------------ACATAAAAC--------------------------ACAATTTCAATACCCCTCTCC-------------TAAATGGGGTTTTACCAAAACAACTGGGCATTAAAATGCCTAACAGACA---CAACGGGCCCAGGCTCTGCAAAGCATTCT----------------AAAAAAAGACCTGCGCCAAACAGGGTGGAGGCCACAGAAATCAACAAGACAGTACCTTGCTGCCATGGCTGCCGGTTCCTGGACCA-GGGAGGGA-AGGGAAGGACAGCAGGCTTGGTGTTTCCCACTGTCAGTACCAACAGCGAATGGCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        69760 394 -   1709092 -ATACTTCCTTGCCCAGGGGAACAGGGTAGTTGCTGACCT-------------TTCTGGAAAAACCTGAGTCAGC-----AGAAGGC--CAGT-ACTTCAAGAAACCCTATCT--TAACCCAGAGATAGTTACTTAAGGTAA---------------AGCTC----TCCCCATCCACATCC-----------------ACATAAA----------------------------ACAATTTCAATACCCCTCTCC-------------TAAATGGGGTTTTACCAAAACAACTGGGCATTAAAATGCCTAACAGACA---CAACGGGCCCAGGCTCTGCAAAGCATTCT----------------AAAAAAAGACCTGCGCCAAACAGGGTGGAGGCCACAGAAATCAACAAGACAGTACCTAGCTGCCATGGCTGCCAGTTCCTGGACCA-GGGAGGGA-AGGGAAGGACAGCAGGCTTGGTGTTTCCCACTGTCAGTACCAACAGCGAATGGCTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17229222 394 - 121039945 -ATACTTCCTCGCCCAGGGGAACAGGGTAGTTGCTGACCT-------------TTCTGGAAAAACCTGAGTCAGC-----AGAAGGC--CAGT-ACTTCAAGAAACCCTATCT--TAACCCAGAGATAGTTACTTAAGGTAA---------------AGCTC----TCCCCATCCACATCC-----------------ACATAAA----------------------------ACAATTTCAATACCCCTCTCC-------------TAAATGGGGTTTTACCAGAACAACTGGGCATTAAAATGCCTAACAGACA---CAACAGGCCCAGGCTCTGCAACGCATTCT----------------AAAAAAAGACCTGCGCCAAGCAGGGTGGAGGCCACAGAAATCAACAAGACAGTACCTTGCTGCCATGGCTGCCGGTTCCTGGACCA-GGGAGGGA-AGGGAAGGACAGAAGGCTTGGTGTTTCCCACTGTCAGCACCAACAGTGAATGGCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60909819 394 + 169600520 -ATACTTGCTTACCCAGGGGAACAGGGCAGTTACTGACCT-------------TTCTGGAAAATCCTGAGTCAGT-----AGAAGGC--CAGT-ACTTCAAGAAACCCTATCT--TAACCCAGAGGTAGTTACTTAAGGTAA---------------AGCTC----TCCCCATCCACAACC-----------------ACATAAA----------------------------ACAATTTCAATACCCCTCCCC-------------TAAATGGGGTTTTACCAAAACAACTGGGCGTTAAAATGCCTAACAGACA---CAACAGGCCCAGGCTCTGCAAAGCACTCT----------------AAAAAAAGACCTGCACCAAACAGGGTGGAGGCCACAGAAATCAACAAGACAGTACCTTGCTGCCATGGCTGCCGGTTCCTGGACCA-GGGAGGGA-AGGGAAGGACAGCAGGCTTGGTGTTTCCCACTGTCAGCACCAACAGCAAATGGCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108436561 394 - 171882078 -ATACTTGCTTACCCAGGGGAACAGGGCAGTTACTGACCT-------------TTCTGGAAAATCCCGAGTCAGT-----AGAAGGC--CAGT-ACTTCAAGAAACCCTATCT--TAACCCAGAGGTAGTTACTTAAGGTAA---------------AGCTC----TCCCCATCCACAACC-----------------ACATAAA----------------------------ACAATTTCAATACCCCTCCCC-------------TAAATGGGGTTTTACCAAAACAACTGGGCGTTAAAATGCCTAACAGACA---CAACAGGCCCAGGCTCTGCAAAGCACTCT----------------AAAAAAAGACCTGCACCAAACAGGGTGGAGGCCACAGAAATCAACAAGACAGTACCTTGCTGCCATGGCTGCCGGTTCCTGGACCA-GGGAGGGA-AGGGAAGGACAGCAGGCTTGGTGTTTCCCACTGTCAGCACCAACAGCAAATGGCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        49932 394 -   2311642 -ATACTTGCTTACCCAGGGGAACAGGGCAGTTACTGACCT-------------TTCTGGAAAATCCTGAGTCAGT-----AGAAGGC--CAGT-ACTTCAAGAAACCCTATCT--TAACCCAGAGGTAGTTACTTAAGGTAA---------------AGCTC----TCCCCATCCACAACC-----------------ACATAAA----------------------------ACAATTTCAATACCCCTCCCC-------------TAAATGGGGTTTTACCAAAACAACTGGGCGTTAAAATGCCTAACAGACA---CAACAGGCCCAGGCTCTGCAAAGCACTCT----------------AAAAAAAGACCTGCGCCAAACAGGGTGGAGGCCACAGAAATCAACAAGACAGTACCTTGCTGCCATGGCTGCCGGTTCCTGGACCA-GGGAGGGA-AGGGAAGGACAGCAGGCTTGGTGTTTCCCACTGTCAGCACCAACAGCAAATGGCTG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        45501 394 -   1987038 -ATACTTGCTTGCCCAGGGGAACAGGGCAGTTACTGACCT-------------TTCTGGAAAATCCTGAGTCAGT-----AGAAGGC--CAGT-ACTTCAAGAAACCCTATCT--TAACCCAGAGGTAGTTACTTAAGGTAA---------------AGCTC----TCCCCATCCACAACC-----------------ACATAAA----------------------------ACAATTTCAATACCCCTCCCC-------------TAAATGGGGTTTTACCAAAACAACTGGGCGTTAAAATGCTTAACAGACA---CAACAGGCCCAGGCTCTGCAAAGCACTCT----------------AAAAAAAGACCTGCGCCAAACAGGGTGGAGGCCACAGAAATCAACAAGACAGTACCTTGCTGCCATGGCTGCCAGTTCCTAGACCA-GGGAGGGA-AGGGAAGGACAGCAGGCTTGGTGTTTCCCACTGTCAGCACCAACAGCAAATGGTTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21125784 393 -  24206276 -ATACTTCCTTGCCCAGGGGAACAGGGCAGTTACTGACCT-------------TTCTGGAAAATCCTGAGTCAGT-----AGAAGGC--CAGT-ACTTCAAGAAACCCTATCT--TAACCCAGAGGTAGTTACTTAAGGTAA---------------AGCTC----TCCCCATCCACAACC-----------------ACATAAA----------------------------ACAATTTCAATACCCCT-CCC-------------TAAATGGGGTTTTACCAAAACAACTGGGCGTTAAAATGCCTAACAGACA---CAACAGGCCCAGGCTCTGCAAAGCACTCT----------------AAAAAAAGACCTGCGCCAAACAGGGTGGAGGCCACAGAAATCAACAAGACAGTACCTTGCTGCCATGGCTGCCGGTTCCTGGACCA-GGGAGGGA-AGGGAAGGACAGCAGGCTTGGTGTTTCCCACTGTCAGCACCAACAGCAAATGGCTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        48596 394 -   1397330 -ATACTTGCTTGCCCAGGGGAACAGGGCAGTTACTGACCT-------------TTCTGGAAAATCCTGAGTCAGT-----AGAAGGC--CAGT-ACTTCAAGAAACCCTATCT--TAACCCAGAGGTAGTTACTTAAGGTAA---------------AGCTC----TCCCCATCCACAACC-----------------ACATAAA----------------------------ACAATTTCAATACCCCTCCCC-------------TAAATGGGGTTTTACCAAAACAACTGGGCGTTAAAATGCCTAACAGACA---CAACAGGCCCAGGCTCTGCAAAGCACTCT----------------AAAAAAAGACCTGCGCCAAACAGGGTGGAGGCCACAGAAATCAACAAGACAGTACCTTGCTGCCATGGCTGCCGGTTCCTAGACCA-GGGAGGGA-AGGGAAGGACAGCAGGCTTGGTGTTTCCCACTGTCAGCACCAACAGCAAATGGCTG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        64379 396 -   1784207 -ATACTTCCTTGCCCAGGGGAACAGGGCAGTTACTGACCT-------------TTCTGGAAAATCCTGAGTCAGC-----AGAAGGCTACAGC-ACTTCAAGAAACCCTATCT--TAACCCAGAGGTAGTTACTTAAGTTAA---------------AGCAC----TCCCCATCCACAACC-----------------ACATAAA----------------------------ACAATTTCAATACTCCTCCCC-------------TAAATGGGGTTTTACCAAAACAACTGGGCGTTAAAATGCCTAACAGACA---CAACAGGCCCAGGCTCTGCAAAGCACTCT----------------AAAAAAAGACCTGCGCCAAACAGGGTGGAGGCCGCAGAAATCAACAAGACAGTACCTTGCTGCCATGGCTGCCAGTTCCTGGACCA-GGGAGGGA-AGGGAAGGACAGCAGGCTTGGTGTTTCCCACTGTCAGCAACAACAGCAAATGGCTG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22267121 395 + 158406734 -ATACTCTCCTGCCTAGGGGAACAGGGCAGTTACTGACCT-------------TTCTGGAAAAACCTGAGTCAGC-----AGAAAGC--CAGT-ACTTCAAGAAGCCCTATCT--TAACCCAGAAGTAGTTCCTTAAGGTAA---------------AGCTCT---TCCCCATCCACATCC-----------------ACATCAA----------------------------ACAATTTCAATACCCCTCCCC-------------TAAATGGGGTTTTACCAAAACAACTAGGCATTAAAATGCCTAACAGACA---CAACAGGCCCAGGTTCTGCAAAGCATTCT----------------AAAAAAAGACGTGCGCCAAACAGGGTGGAGGCCACAGAAATCAACAAGACGGTACTTTGCTGCCATGGCTGCTGGTTCCTGGACCA-CAAAGGGA-AGGGAAGGATAGCAGGCTTGGTGTTTCCCAGTGTCAGCACCAACAACAAATGGCTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50498179 399 +  54856640 -ATACTTCCTTGCCTAGGGGAACAGGGCAGTTACTGACTT-------------TTCTGGAAAAATCTGAGTCAGC-----AGAAGGC--CAGT-ACTTCAAGAAACCCTATCT--TAACCCAGAAATAGTTACTTAAGGTTA---------------AGCTCTATATCCCCATCCACATCC-----------------ACATCCG----------------------------ACAATTTCAATACCCCTCCCC-------------TAAATGGGGTTTTACCAAAACAACTAGGCATTAAAATGCCTAACAGACA---CAACGAGCCCAGGCTCTGCAAAGCATTCT----------------AAAAAAAGACTTGCGCCAAACAGGGTGGAGGCCACAGAAATCAACAAGACGGTACTTTGCTGCCATGGCTGCCGGTTCCTGGACCAGGAAGGGGA-AGGGAAGGATAGCAGGCTTGGTGTTTCCCAGTGTCAGCACCAACAACAAATGGCTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       641195 395 -   2910086 -ATACTTCCTTGCCTAGGGGAACAGGGCAGTTACTGACCT-------------TTCTGGAAAAACCTGAGTCAGC-----AGAAGGT--GAGT-AGTTCAAGAAGCCCTATCT--TAACCCAGAAGTAGTTACTTAAGGTAA---------------AGCTCT---TCCTCATCCACATCC-----------------ACATCAA----------------------------ACAATTTCAATACCCCTCCCC-------------TAAATGGGGTTTTACCAAAACAACTAGGCATTAAAATGCCTAACAGACA---CAACAGGCCCAGGCTCTGCAAAGCATTCT----------------AAAAAAAGACTTGCGCCAAACAGGGTGGAGGCCACAGAAATCAACAAGACGGTACTTTGCTGCCATGGCTGCCGGTTCCTGGACCA-GGAAGGGA-AGGGAAGGATAGCAGACTTGGTGTTTCTCAGTGTCAGCACCAACAACAAATGGCTG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40668793 395 +  42888418 -ATATTTCCTTGCCTAGGGGAACAGGGCAGTTACTGACCT-------------TTCTGGAAAAACCTGAGTCAGC-----AGAAGGC--CAGT-ACTTCAAGAAGCACTATCT--TAACCCAGAAGTAGTTACTTAAGGTAA---------------AGCTCT---TCCCCATCCACATCC-----------------ACATCAA----------------------------ACAATTTCAATACCCCTCCCC-------------TAAATGGGGTTTTACCAAAACAACTAGGCATTAAAATGCCTAACAGAGA---CAACAGGCCCAGGCTCTGCAAAGCATTCT----------------AAAAAAAGACTTGCGCCAAACAGGGTGGAGGCCACAGAAATCAACAAGACGGTACTTTGCTGCCATGGCTGCCGGTTCCTGGACCA-GGAACGGA-AGGGAAGGATAGCAGGCTTGGTGTTTCCCAGTGTCAGCAGCAACAACAAATGGCTG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113292035 388 + 116334831 -ATACTTCCTTGCCCAGGGAAACAGGGCACTTACTAACCT-------------TTCTGGAAAATCTTGAGTAAGC-----TAAAGGC--CATA-ACTTCAAGAGACCCCATCT--TAACCCAGAGGTA-TTACTTAAGGCAA---------------AGCTC----TTC----CCCCACCC-----------------ACATATA----------------------------AAAAATTCAATCTCCCTCCCC-------------CAAATGGGAATTTACCCAAACAACTGGGCATTAAAATGCCTACCAGACA---CAACAGTCCC-GGCTCTGCAAAGCATTCT----------------AAAAAAAGACCTGCGCCAAACAGGGTGGAGGCCAGAGAAATCAACAAGACAGTACCCTGCTGCCATGACGGCTAGATTCTGAACCG-GGGAGGCA-GGGGAAGGACAGCAAGCTCAGTGTTTCCCACAGTCAGCACCAACAGCAAATGGCTG
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        37028 389 +     80520 -ATACTTCCTTGCCCAGGTAAACAGGGCACTGACCAACCT-------------TTCTGGAAAATCCTGACTAAGC-----TAAAGGC--CATA-ACTTTAAGAGACCCCACCT--TAACCCAGAGGTAGTTACTTAAGGTAA---------------AGCTC----TTC----CCCCACCC-----------------ACATATA----------------------------AAAAATTCAATCCCCGTCCCC-------------CAAATGGGAATTTACCCAAACAACTGGGCATTAAAATGCCTACCAGACA---CAACAGTCCC-GACTCTGCAAAGCATTCT----------------AAAAAAAGACCTGCGCCAAACAGGGTGGAGGCCAGAGAAATCAACAAGACAGTACCTTGCTGCCATGATGGCTGGATTCTGGACCC-GGGTGGCA-GGGGAAGGACAGCAGGCTCAGTGTTTCCCACAGTCAGCACCAACAGCAAATGGCTG
i proCoq1.NW_012142813v1    C 0 I 363
s otoGar3.GL873530             653775 390 -  36342412 -GGACCTCCTTGCCCAGGGAAACAGGGCA---------GT-------------TTCTGGAAAA-ATTGAGTAAGC-----TGAAGGC--CATA-ACTTCAAGATACTTTATCT--TAACCCAGAGGTAGTTACTTAAGGGAA---------------ATTTC----TTC----CCCCATCC-----------------ACCTCCAAAAAATAAaaagaaagaaagaaagaaagaaaAATTCAATCTCTCTCCCC-------------CAAATGAGAATTTACCCA---AACTGGGCATTAAAATGCCTAACAGACA---CAACAGTCTCAGGCTCTGCAAAACATTCT----------------TAAGAAAGACCTACGCTAAACAGGGTGGAGGGCTGAAAAAT-------------CCTTGCTGCCCTGACTACTGAGCTCTGGACTA-GAGAAGCA-GGGTGAGGACAGCAGACTCAGTA-TTCCCACAGTCAGCACCAAAAGCAAAT-ACTG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81370720 368 + 145441459 ---ATTTCCTGGCCTAGAG-AACAGAGTACTTATCAACCTCCCCACCCCACCCCCCTAAAAAAGCTGGAGATAGCATTCAAGATAAC--TTTA-CCTTCAAGGGATCCTACCTACTAACCAAGTGGAA------------AA---------------AAATA----TCAACCTTCCTCTTC-----------------CCCCAAA----------------------------GCG------------CTTTCC-------------TAAAT-----------AAAACAAAGGGGTATTAAAATGCCTAATGGACAT--CAAGAGTACCAGACTCTGCAAAGCATTTT----------------TTAAAAACACCTGCATCACATAGGGTGGAGGACAGAGAAACCAACACAGCAGTACCTTGCTGCCATGACT-CCTCTTCCTAGACTG-GGAAGGTATCTGAAAGGACAGTATACT---------CTACTGCCACCATCAAAGGCAAATGACTA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54430714 431 +  91889043 -ACACTTACTTGCCCAGAGGAACAGGGCAGTTACCAACCT-------------TTCTGGATAAACCTGCCTCAAC-----TGAAGGC--CAATAACTTCAAGAAACTCTACCT--TGACCCAGAGTTAGTTATTTAGGGCAA---------------AGCTCT---TTCCCATCCTCAAATTaaaaaaaaaaaaaaaaaaaaaaa----------------------------aaaaaTCCAACCCCCTACCCT-------------CAAATGGGATTTTGCTGAAACAACTGGCCATTAAAATGCC-AGCAGACACAACAACAGTCCCAGGCTCTGCAAAGCATTCTTaaaaaaaaaaaaaaaaaaaaaaaaCCTGCACCAAATAGGGTGGAGGCCAGAGAAATCAACAAGACAGTACCTTGCTGCCATGACTGCCAGTTTCTGGAGTG-GGGGAGGC-GAGGAAGGACAGCAGGCTCAGTGAATCCCACGATCAGCACCAACAGCAAATGGCTG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1825755 406 +   3943991 ACAACTTCCTTGCCCAGGAAAACAAGGCAGTTACCATGCT-------------TTCTGATAAAAACTGAATGAGC-----TGAAGGC--TAGT-ACTTCAAGAAACCCTATCT--CAACCCAGAGGCAATTACTTAAGGCAATGGAACAGAGAATGGAATTCT---TCTCCACTCACATCC-----------------AAATAAA----------------------------AAAAATCCAATTGCTCTTTGCACCACCACCAAATTAAATGGCATTTTACCAAAACAACTGGGCATTACAACATCAAACAGACA---CAGGAGTCCCAGGCTCTGCAAAGCAGAGT----------------GAAAAAAGACCTGCGCCAAACAGGGTGGAGGCCAGAGAAATCAACAAGACAGTACCTTACTGCCATGTCTGCCGACTACTGGAGCAGGGGAGGCA-AAGTGAGGGTGGCAGGCTCAGTGTATTCCACGGTCAG-------------------
i dasNov3.JH570731          C 0 C 0

a score=4562851.000000
s hg38.chr15_KI270850v1_alt    359476 357 +    430880 TACCACCCCCTCCCCC-----------CCGCCCCT-TACCACCTTTTCATTTTCCTAGAGTATCTGCTGCCAATA--C-CTCTTTAT-----TAT-----AATTTACATAAAGCAAAATATGTAG--CTTGTAAGTATACCT-GT-AG-----------------------------------------------------------------------------------------TGTT---TAAGTT---CACATTTCTTCCTGAATACTCCAAGACTTGTATTTAGGC-AACCCTCCT-CCTTGTACCACAAGAGGGAAATAAACAGGTAAC-AGAAGGTATAAGCAGAAGCAATTTAAGGGGGGGCTGCCAAG-AAGTCCCTTTAGTTTGTCCCCACTGAACCC-TACCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGG--AAA--
s panTro5.chr15              63512881 359 +  83230942 TACCACCCCCTCCCCC-----------CCGCCCCT-TACCACCTTTTCATTTTCCTAGAGTATCTGCTGCCAATA--C-CTCTTTAT-----TAT-----AATTTACATAAAGCAAAATATGTAG--CTTGTAAGTATACCT-GT-AG-----------------------------------------------------------------------------------------TGTT---TAAGTT---CACATTTCTTCCTGAATACTCCAAGACTTGTATTTGGGC-AACCCTCCT-CCTTGTACCACAAGAGGGAAATAAACAGGTAAC-AGAAGGTATAAGCAGAAGCAATTTAAGGGGGGGCTGCCAAG-AAGTCCCTTTAGTTTGTCCCCACTGAACCC-TACCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGGAAAAA--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80469972 354 +  99763055 TACCACCCCCT-CCCC-----------CCGCCCCT-TACCACCTTTTCATTTTCCTAGAGTATCTGCTGCCAATA--C-CTCTTTAT-----TAT-----AATTTACATAAAGCAAAATATGTAG--CTTGTAAGTATACCT-GT-AG-----------------------------------------------------------------------------------------TGTT---TAAGTT---CACATTTCTTCCTGAATACTCCAAGACTTGTATTTGGGC-AACCCTCCT-CCTTGTACCACAAGAGGGAAATAAACAGGTAAC-AGAAGGTATAAGCAGAAGCAATTTAA-GGGGGGCTGCCAAG-AAGTCCCTTTAGTTTGTCCCCACTGAACCC-TACCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGG---AA--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        70154 364 -   1709092 TACCACCCCTCCCCCC-CGGC---CCACTGCCCCT-TACCACCTTTTCATTTTCCTAGAGTATCTGCTGCCAATA--C-CTCTTTAT-----TAT-----AATTTACATAAAGCAAAATATGTAG--CTTGTAAGTATACCC-AT-AG-----------------------------------------------------------------------------------------TGTT---TAAGTT---CACATTTCTTCCTGAATACTCCAAGACTTGTATTTGGGC-AACCCTCCT-CCTTGTACCACAAGAGGGAAATAAACAGGTAAC-AGAAAGTATAAGCAGAAGCAATTTAA-GGGGGGCTGCCAAG-AAGTCCCTTTAGTTTGTCCCCACTGAACCC-TACCAAGAAGACAAGGGATCC-------TAAAGAGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTC-ACACAAAGGGAAAAA--
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17229616 366 - 121039945 TACTACCCCCTCCCCCGCGCC---CTACTGCCCCT-TACCACCTTTTCATTTTCCTAGAGTATCTGCTGCCAATA--C-CTCTTTAT-----TAT-----AATTTACAGAAAGCAAAATATGTAG--GTTGTAAGTATACCCGGT-AG-----------------------------------------------------------------------------------------TGTT---TAAGTT---CACATTTCTTCCTGAATACTCCAAGACTTGTATTTGGGC-AACTCTCCT-CCTTGTACCACAAGAGGGAAATAAACAGGTAAC-AGAAGGCCTGAGCAGAAGCAATTTAAGGGGGGTCTGCCAAG-AAGTCCCTTTAGTTTGTCCCCACTGAACCC-TACCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGG--AAA--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60910213 361 + 169600520 CACCACCCCCCTTCCC--CAC---CCACTGCCCCT-TACCACCTTTCCATTTTCCTAAAGTATCTGCTGCCAATA--C-CTCTTTAT-----TAT-----AATTTACATAAAGCAAAATACGTAG--GTTGTAAGTGTACCT-GT-AG-----------------------------------------------------------------------------------------TGTT---TAAGTT---CACATTTCTTCCTGAATACTCCACAACTTGCATTTGGGC-AACCCTCCT-CCTTGTACCACAAGAGGGAAATAAATGGGTAAC-AGAAGGTCTAAGCAGAAGCAGTTTAAGGGGGGGCTGCCAAG-AAGTCCCTTTCGTTTGACCCCATTGAATCC-TATCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGG----A--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108436955 361 - 171882078 CACCACCCCCCTTCCC--CAC---CCACTGCCCCT-TACCACCTTTCCATTTTCCTAAAGTATCTGCTGCCAATA--C-CTCTTTAT-----TAT-----AATTTACATAAAGCAAAATACGTAG--GTTGTAAGTATACCT-GT-AG-----------------------------------------------------------------------------------------TGTT---TAAGTT---CACATTTCTTCCTGAATACTCCACAACTTGCATTTGGGC-AACCCTCCT-CCTTGTACCACAAGAGGGAAATAAATGGGTAAC-AGAAGGTCTAAGCAGAAGCAGTTTAAGGGGGGGCTGCCAAG-AAGTCCCTTTCGTTTGACCCCATTGAATCC-TATCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGG----A--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        50326 361 -   2311642 CACCACCCCCCTTCCC--CAC---CCACTGCCCCT-TACCACCTTTCCATTTTCCTAAAGTATCTGCTGCCAATA--C-CTCTTTAT-----TAT-----AATTTACATAAAGCAAAATACGTAG--GTTGTAAGTATACCT-GT-AG-----------------------------------------------------------------------------------------TGTT---TAAGTT---CACATTTCTTCCTGAATACTCCACAACTTGCATTTGGGC-AACCCTCCT-CCTTGTACCACAAGAGGGAAATAAATGGGTAAC-AGAAGGTCTAAGCAGAAGCAGTTTATGGGGGGGCTGCCAAG-AAGTCCCTTTCATTTGACCCCATTGAATCC-TATCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGG----A--
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        45895 362 -   1987038 CACCACCCCCCTTCCC--CAC---CCACTGCCCCT-TACCACCTTTTCATTTTCCTAAAGTATCTGCTGCCAATA--C-CTCTTTAT-----TAT-----AATTTACATAAAGCAAAATACGTAG--GTTGTAAGTATACCT-GT-AG-----------------------------------------------------------------------------------------TGTT---TAAGTT---CACATTTCTTCCTGAATACTCCACAACTTGCATTTGGGC-AACCCTCCT-CCTTGTACCACAAGAGGGAAATAAATGGGTAAC-AGAAAGTCTAAGCAGAAGCAGTTTAAGGGGGGGCTGCCAAG-AAGTCCCTTTCGTTTGACCCCATTGAATCC-TATCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGG---AA--
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21126177 360 -  24206276 CACCACCCCCCTTCCC--CA----CCACTGCCCCT-TACCACCTTTTCATTTTCCTAAAGTATCTGCTGCCAATA--C-CTCTTTAT-----TAT-----AATTTACATAAAGCAAAATATGTAG--GTTGTAAGTATACCT-GT-AG-----------------------------------------------------------------------------------------TGTT---TAAGTT---CACATTTCTTCCTGAATACTCCACAACTTGCATTTGGGC-AACCCTCCT-CCTTACACCACAAGAGGGAAATAAATGGGTAAC-AGAAGGTCTAAGCAGAAGCAGTTTAA-GGGGGGCTGCCAAG-AAGGCCCTTTCGTTTGACCCCATTGAATCC-TACCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGG---AA--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        48990 362 -   1397330 CACCACCCCCCTTCCC--CAC---CCACTGCCCCT-TACCACCTTTTCATTTTCCTAAAGTATCTGCTGCCAATA--C-CTCTTTAT-----TAT-----AATTTACATAAAGCAAAATACGTAG--GTTGTAAGTATACCT-GT-AG-----------------------------------------------------------------------------------------TGTT---TAAGTT---CACATTTCTTCCTGAATACTCCACAACTTGCATTTGGGC-AACCCTCCT-CCTTGTACCACAAGAGGGAAATAAATGGGTAAC-AGAAAGTCTAAGCAGAAGCAGTTTAAGGGGGGGCTGCCAAG-AAGTCCCTTTCGTTTGACCCCATTGAATCC-TATCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGG---AA--
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        64775 359 -   1784207 CACCACCCCACTTCCC--CAC---CCACTGCCCCT-TACCACCTTTTCATTTTCCTAAAGTATCTGCTGCCAATA--C-CTCTTTAT-----TAT-----AATTTACATAAAGCAAAATATGTAG--GTTGTAAGTATACCT-GT-AG-----------------------------------------------------------------------------------------TGTT---TAAGTT---CACATTTCTTCCTGAATACTCCACAACTTGCATTTGGGC-AACCCTCCT-CCTTGTACCACAAGAGGGAAATAAATGGGTAAC-AGAAGGTCTAAGCAGAAGCAGTTTAAGGGGGGGCTGCCAAG-AAGTCCCTTTCATTTGTCCCCATTGAATCC-TACCAAGAAGACAAGGAATCC-------TAAAGAGGAGTGGTTCT---TCTTTTATCCA-CTGGTCACTCTCAACACAAAGGG-------
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22267516 342 + 158406734 CACCCACTCCCT--------------ACTGCCCCT-TACCACCTTTTTATTTTCCTAGAGTATCTGCTGCCAATA--C-CTC----T-----TATGATACAATTTATATGAAGCAAAATATGTAG--GTTGTAAGTATACCT-GT-AG-----------------------------------------------------------------------------------------TATT---TAAGTT---CACATTTCTTCCTGAATACTCCAAGACTTGC-----------CCCTCCT-CCTTGTACCACAAGAGGGAAATAAACAGGTAAC-GGAAGGTCTGAGCAGAAGCAGTTCAA-GGGGGGCTGCCAAA-AAGTCCCTTTAGTTTGTCCCCATTGAATCC-TACCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGA----A--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50498578 346 +  54856640 CACCCACTCCTT--------------ACTGCCCCT-TACCACCTTTTCATCTTCCTAGAATATCTGCTGCCAATA--C-CTCTTTAT-----TATGATACAATTTATGTGAAGCAAAATATGTAG--GTTGTAAGTATACCT-GT-AG-----------------------------------------------------------------------------------------TATC---TAAGTT---CCCATTTCTTCCTGAATACTCCAAGACTTGC-----------CCCTCCT-CCTTGTACCACAAGAGGGAAATAAACAGGTAAC-GGAAGGTCTGAGCAGAAGCAGTTCAA-GGGGGGCTGCCAAA-AAGTCCCTTTAGTTTGTCCCCATTGAATCC-TACCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGAA----A--
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       641590 346 -   2910086 CACCAGCCCCTT--------------AGTGCCCCT-TACCACCTTTTCATTTTCCTAGAGTATCTGCTGCCAATA--C-CTCTTTAT-----TATGATACAATTTATATGATGCAAAATATGCAG--GTTGTAAGTATACCT-GT-AG-----------------------------------------------------------------------------------------TATT---TAAGTT---CACATTTCTTCCTGAATACTCCAAGACTTGC-----------CCCTCCT-CCTTGTACCACAAGAGGGAAATAAACGGGTAAC-GGAAGGTCTGAGCAGAAGCAGTTCAA-GGGGGGCTGCCAAA-AAGTCCCTTTAGTTTGTCCCCATTGAATCC-TACCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGA----A--
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40669188 346 +  42888418 CACCCACCCCCC--------------ACTGCCCCT-TACCACCTTTTCATTTTCCTAGAGTATCTGCTGCCAATA--C-CTCTTTAT-----TATGATACAATATATATGAAGCAAAATATGTAG--GTTGTAAGTATACCT-GT-AA-----------------------------------------------------------------------------------------TATT---TAAGTT---CACATTTCTTCCTGAATACTCCAAGACTTGC-----------CCCTCCT-CCTTGTACCACAAGAGGGAAATAAACAGGTAAC-GGAAGGTCTGAGCAGAAGCAGTTCAA-GGGGGACTGCCAAA-AAGTCCCTTTAGTTTGTCCCCATTGAATCC-TACCAAGAAGACAAGGGATCC-------TAAAGGGGAGTGGCTCT---TCTTTTATCCAGCTGGTCACTCTCAACACAAAGGA----A--
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113292423 345 + 116334831 ------------------CATCCCCCGCCGCCCCT-TACTACCTT-CCATCTCCACATAGTATCTGCTGCCAATA--C-TTCATGG------CAT-----AATTTACATAAATCAAAATATGCAG--ATTAGAAGTATACCT-AT-AG-----------------------------------------------------------------------------------------TATT---TAGTT----CACATTTCTTCCTCAATACTCTAAGACTTGCATCTGGCC-AACCCTCCTCCCTTTTACCACAAGAGGGAAATAAACGGGCAAT-GGAAGGTCTGAGCAGAAGCAGTTCAA-GGGGGTTTGCCAAG-AAGACACTTCAATTTGTCCCCATCGAATCC-TAGCAAGAAGACAAGGGATCC-------TAAATGGGAGTGGCTCT---TCTTTCATCCATCTGGTCACCCTCAacacacacac----a--
i micMur3.chr9              C 0 I 33
s otoGar3.GL873530             654165 342 -  36342412 ------------------------CAACACCCCAT-TATCACCTTCCCATCTTCCTATAGTACCTGCTGCCAATA--C-TTCATGA------TAT-----AATTTGCATAAATTAAAATATGTAG--ATTATAAGTATACCT-GTAAG-----------------------------------------------------------------------------------------TGTT---TAAGTTCACCACATTTCTTCCTGAATACTCTAA---TTGTATCTGGCC-AACCCTCCTGCCTTATACCATAACAGGGAAATAAACGGGTAAT-GGAAGGCCTGAACAGCAGCAGTTTAA-GGGAGGTTGCCAAG-AAGTCCCTTCAATTTGTCCCCATAGAATCC-TACCAAAACAACAAGGGATCA-------TAAAGGGGAGTGGCTCT---TCTTTTATCTATCTGGTCACCCTCAATACAAAGAA----A--
i otoGar3.GL873530          C 0 I 2
s mm10.chr7                  81371088 324 + 145441459 ------------------------------CACATACACCAGTTCTCCATATTCCCATAGAATCTGCT---AATA--C-TTTTGCAT-----TGT-----GAT----ATAAAGTAAAATATACTGTTTTTTTAAGTAATACT-AT-AG-----------------------------------------------------------------------------------------CATT---TAAATT---CACAATTCTTCCTGGAAATTTTATGATTTTTACCTGATT-AATCTTCCC-CCAAATACCACAAGAAGGGAATAAACAGGTAATGGGAAGGTCTGAGCAGAAGCAGTTCAAAGATTTGTCAATAAT-AACTCCCTGTAATTTGTTCCCATTAATCCTATATCAAGAAGACAAGAGATGC-------TAAAGGGGAGTGGC-------CTCTCATCCA-TTAGTTACCTTGAACAAAC-----------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54431145 350 +  91889043 --------------------------CCCCACCTC-CACTACCTTTCCATCTTCCTAAAGTATCTGCTGCTAGTA--CTCTTTTTAT-----TAAGACACAATTTATATAAAGCAAAATACATGG--ATTTTAAGT-TACCT-AT-CA-----------------------------------------------------------------------------------------TATTTCCTAAGTT-----CATTTCTTGCTGAATACTCCAAGACTTGG-TCTGGTC-AACCGTCCC-CTGTGTACCACAAGAAGGTAATGAACGGGCACTGGGAAGGTCTTGCCAGAAGCAGCTCAA---GGGGTTGCCCAG-AAGCCCCTTCAATCTGTCCCCATCAAAACC-TCTCAACGCAATAAGGGGTCCAGGGTCTTAAAGGGGAGTGGCTCTTCCTCCTCCATCCATTTGGTTGCCCTTCACACAAAG---------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1826161 428 +   3943991 --------------------------ACCCTGCTTATACTACCTTTCCACATTCCTACAGTATCTGTTGCCAATATTC-TTTTTTATTGAGGTAT-----AATTTACATAAATTAAAATATGCAG--ATTTCATCTATGTCT-AT-AGATCTTTTTCTTTTTAAAAAATGATTTATTACCCTCCACCCTCCCTGCCTTGTTGTTTGCACTCACTGTCTGCTCTCTGTTCTATAATATTTCT---TAAGTT---CACATTTCTTCCTGAATACTCCAAGACTCAGGACCGGCCTAACCTTCTC-CCTTATATCATAAGAGGG-AGTAAGTAGGCAGTGGGGAGGTGTGAGCAGAAGCAGTTCAT---TGGGTTGCCAAGTACCCCCCTTCAATCTGTTCCCATCAAATCC-CACCAAAAAGAC----------------AAAAGGGGAGTGGCTCT---TCCTTCCTC-ACCTGGGTACTCTTAACATAAATAA----AGA
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        37417 363 +     80520 I

a score=114918.000000
s hg38.chr15_KI270850v1_alt    359833 12 +    430880 -----------AAAAAAAAAGAT-
s panTro5.chr15              63513240 12 +  83230942 -----------AAAAAAAAAGAT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80470326 12 +  99763055 -----------AAAAAAAAAGAT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        70518 12 -   1709092 -----------AAAAAAAAAGAT-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17229982 12 - 121039945 -----------AAAAAAAAAGAT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60910574 12 + 169600520 -----------AAAAAAAAAGGT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108437316 12 - 171882078 -----------AAAAAAAAAGGT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        50687 12 -   2311642 -----------AAAAAAAAAGGT-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        46257 12 -   1987038 -----------AAAAAAAAAGGT-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21126537 12 -  24206276 -----------AAAAAAAAAGGT-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        49352 12 -   1397330 -----------AAAAAAAAAGGT-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        65134 12 -   1784207 -----------AAAAAAAAAGGT-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22267858 12 + 158406734 -----------AGGAAAAAAGGC-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50498924 12 +  54856640 -----------AGAAAAAAAGGC-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       641936 12 -   2910086 -----------AGAAAAAAAGGC-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40669534 12 +  42888418 -----------AGAAAAAAAGGC-
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             654509 12 -  36342412 -----------AAAAAAAAACCT-
i otoGar3.GL873530          I 2 C 0
s mm10.chr7                  81371412  8 + 145441459 ---------------AGCCAGCC-
i mm10.chr7                 C 0 I 4
s canFam3.chr3               54431495 12 +  91889043 -----------AAAAACAAAGGC-
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1826589 24 +   3943991 AAAAAAACCACACAAAACAAAACC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113292768 33 + 116334831 I
e proCoq1.NW_012142813v1        37417 363 +     80520 I

a score=41826.000000
s hg38.chr15_KI270850v1_alt    359845 4 +    430880 TCTA
s panTro5.chr15              63513252 4 +  83230942 TCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80470338 4 +  99763055 TCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        70530 4 -   1709092 TCTA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17229994 4 - 121039945 TCTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60910586 4 + 169600520 TCTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108437328 4 - 171882078 TCTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        50699 4 -   2311642 ACTA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        46269 4 -   1987038 TCTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21126549 4 -  24206276 TCTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        49364 4 -   1397330 TCTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        65146 4 -   1784207 TCTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22267870 4 + 158406734 TCTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50498936 4 +  54856640 TCTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       641948 4 -   2910086 TCTG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40669546 4 +  42888418 TCTG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113292801 4 + 116334831 TCTG
i micMur3.chr9              I 33 C 0
s otoGar3.GL873530             654521 3 -  36342412 CCT-
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81371424 4 + 145441459 TCTG
i mm10.chr7                 I 4 C 0
s canFam3.chr3               54431507 4 +  91889043 TCCG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1826613 4 +   3943991 TCTG
i dasNov3.JH570731          C 0 C 0
e proCoq1.NW_012142813v1        37417 363 +     80520 I

a score=1343551.000000
s hg38.chr15_KI270850v1_alt    359849 84 +    430880 TAGCTGGGAGTTACCCCACC---CCACTCACCCTGCCTAC-CCCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAA
s panTro5.chr15              63513256 84 +  83230942 TAGCTGGGAGTTACCCCACC---CCACTCACCCTGCCTAC-CCCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80470342 84 +  99763055 TAGCTGGGAGTTACCCCACC---CCACTCACCCTGCCTAC-CCCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        70534 84 -   1709092 TAGCTGGGAGTTACCCCACC---CCACTCACCCTGCCTAC-CCCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17229998 84 - 121039945 TAGCTGAGAGTTACCCCACC---CCACTCACCCTGCCTAC-CCCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60910590 84 + 169600520 GAGCTGGGAGTTACCCCACC---CCATTTACCCTGCCTAC-ACCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108437332 84 - 171882078 GAGCTGGGAGTTACCCCACC---CCACTTACCCTGCCTAC-ACCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        50703 84 -   2311642 GAGCTGGGAGTTACCCCACC---CCATTTACCCTGCCTAC-ACCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        46273 84 -   1987038 GAGCTGGGAGTTACCCCACC---CCATTTACCCTGCCTAC-ACCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21126553 84 -  24206276 GAGCTGGGAGTTACCCCACC---CCATTTACCCTGCCTAC-ACCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        49368 84 -   1397330 GAGCTGGGAGTTACCCCACC---CCATTTACCCTGCCTAC-ACCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        65150 84 -   1784207 GAGCTGGGAGTTACCCCACC---CCATTTACCCTGCCTAC-ACCTTTCCAGGATCAATGCTCTGAACCCTATGTTAAGTCAATTCCAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22267874 83 + 158406734 TAGCTGGGAGTTACCCCACC---CCACTTACCCTGCCTAC-CCCTTTCCAGGATCAATGCTCTTAACCTTACGTGAAGTCAATTCCA-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50498940 83 +  54856640 TAGCTGGGAGTTACCCCACC---CCACTTACCCTGCCTAC-CCCTTTCCAGGATTAATGCTCTTAACCTTACGTTAAGTCAATTCCA-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       641952 83 -   2910086 TGGCTGGGAGTTACCCCACC---CCACTTACCCTGCCTAC-CCCTTTCCAGGATCAATGTTCTTAACCTTACGTTAAGTCAATTCCA-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40669550 83 +  42888418 TAGCTGGGAGTTACCCCACC---CCACTTACCCTGCCTAC-CCCTTTCCAGGATCAATGCTCTTAACCTTACGTTAAGTCAATTCCA-
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113292805 84 + 116334831 TAGTTGGGAGTTTCTCCACC---CCACTTACCCAGCCTAC-CTCTTTCTAGGATCAATGCTCTTAACCTCATGCTAAGTTAATTCCAA
i micMur3.chr9              C 0 I 8
s proCoq1.NW_012142813v1        37780 83 +     80520 TAGCTGGGAGTTACCCCA-C---CCACTTACCCAGCCTAC-CCCTTTCCAGGATCAATCCTCTTAACCTTATGCTAAGTCAATTCCAA
i proCoq1.NW_012142813v1    I 363 I 8
s otoGar3.GL873530             654524 78 -  36342412 TAGCTGGGAGTTACCCCA-C---CCACTTA-CCAGCTTACTCCTTTTCTAGGATCAATGCTCTCAACCTC-----CAATCGATTCCAA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81371428 87 + 145441459 TATCTGGGAGTTACCCTAGCTATCCTCCTCCCCAGCCAGT-CCTTTTCCAGGGTTGATGCTCTTAACCTAATGTTAAGGCAGTCCCAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54431511 84 +  91889043 CAGCTTAGACTTACTCCACC---CCACTGACCCTGCCTAT-CTCTTTCCAGGGTCAAGACTCTCACCCAGATGGTAAGTCAATTCCAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1826617 77 +   3943991 TATCCAGGAGGGACCCCACC---CAGATGACCCAGC-TAC-CCCTTTGCAGAATCAATTCTCTTAACCTTATGTTAA-----TTACA-
i dasNov3.JH570731          C 0 C 0

a score=122135.000000
s hg38.chr15_KI270850v1_alt    359933 11 +    430880 ATATCTCAGTG
s panTro5.chr15              63513340 11 +  83230942 ATATCTCAGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80470426 11 +  99763055 ATATCTCAGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        70618 11 -   1709092 ATATCTCAGTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17230082 11 - 121039945 ATATCCCAGTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60910674 11 + 169600520 ATATCCCAGCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108437416 11 - 171882078 ATATCCCAGCG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        50787 11 -   2311642 ATATCCCAGCG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        46357 11 -   1987038 ATATCCCAGCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21126637 11 -  24206276 ATATCCCAGCG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        49452 11 -   1397330 ATATCCCAGCG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        65234 11 -   1784207 ATATCCCAGCG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22267957 11 + 158406734 ATATCCCAGCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50499023 11 +  54856640 ATATCCCAGCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       642035 11 -   2910086 ATATCCCAGCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40669633 11 +  42888418 ATATCCCAGCA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             654602  8 -  36342412 -TAACCCAG--
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81371515 10 + 145441459 -TAATCAAATG
i mm10.chr7                 C 0 I 1
s canFam3.chr3               54431595 10 +  91889043 -TATCCTAGTG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1826694  9 +   3943991 ATATCTCAG--
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113292889  8 + 116334831 I
e proCoq1.NW_012142813v1        37863  8 +     80520 I

a score=1159276.000000
s hg38.chr15_KI270850v1_alt    359944 72 +    430880 CATTATCCAGCCTCATCTGAGGTTAAAATCCTTCCCTTGCCA-TGATTCAGAGACCACTCACTCTTCATATAA--
s panTro5.chr15              63513351 72 +  83230942 CATTATCCAGCCTCATCTGAGGTTAAAATCCTTCCCTTGCCA-TGATTCAGAGACCACTCACTCTTCATATAA--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80470437 72 +  99763055 CATTATCCAGCCTCATCTGAGGTTAAAATCCTTCCCTTGCCA-TGATTCAGAGACCACTCACTCTTCATATAA--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        70629 72 -   1709092 CATTATCCAGCCTCATCTGAGGTTAAAATCCTTCCCTTGCCA-TGATTCAGAGACCACTAACTCTTCATATAA--
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17230093 72 - 121039945 CATTATCCAGCCTCATCTGAGGTTAAAATCCTTCCCTTGCCA-TGATTCAGAGACCACTCACTCTTCATATAA--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60910685 72 + 169600520 CATTATCCAGCCTCATCCGAGATTAAAATCCGTCCCTTGCCA-TGATTCAGAGACCACTCACTCTTCATATAA--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108437427 72 - 171882078 CATTATCCAGCCTCATCCGAGATTAAAATCCGTCCCTTGCCA-TGATTCAGAGACCACTCACTCTTCATATAA--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        50798 72 -   2311642 CATTATCCAGCCTCATCCAAGATTAAAATCCGTCCCTTGCCA-TGATTCAGAGACCACTCACTCTTCATATAA--
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        46368 72 -   1987038 CATTACCCAGCCTCATCTGAGATTAAAATCCGTCCCTTGCCA-TGATTCAGAGACCACTCACTCTTCATATAA--
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21126648 72 -  24206276 CATTATCCAGCCTCATCTGAGATTAAAATCCTTCCCTTGCCA-TGATTCAGAGACCACTCACTCTTCATATAA--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        49463 72 -   1397330 CATTACCCAGCCTCATCTGAGATTAAAATCCGTCCCTTGCCA-TGATTCAGAGACCACTCACTCTTCATATAA--
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        65245 72 -   1784207 CATTATCCAGCCTCATCTGAGATTAAAATCCTTCCCTTGCCA-TGATTCAGAGACCACTCACTCCTCATATAA--
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22267968 73 + 158406734 CATTATCCAGCCTCATCTGAGGTTAAAATCCTTCCTTTGCCATTGATTCAGAAATCACCCATCCTTCATATAA--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50499034 72 +  54856640 CATTATCCAGCCTCATCTGAGGTTAAAATCCTTTCTTTGCCA-TGATTCAGAGACCACCCACCCTTCATATAA--
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       642046 72 -   2910086 CATTATCCAGCCTCATCTGAGGTTAAAATCCTTCCTTTGCCA-TGATTCAGAGACCACCCACCCTTCATATAA--
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40669644 72 +  42888418 CATTATCCAGCCTCATCTGAGGTTAAAATCCTTCCTTTGCCA-TGATTCAGAGACCACCGACCCTTCATATAA--
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113292897 69 + 116334831 CATTACCCACCCTCACCTGGGGTTAAAATCC---CCTTGCCA-TGATTCAGAGACCACCCATCCTTCATATAA--
i micMur3.chr9              I 8 I 35
s proCoq1.NW_012142813v1        37871 69 +     80520 CATTACCCAGCCTCACCAGAGGTTAAAATTC---CCTTGCCA-TGACTCAGAGACCACCCATCCTTCATATAA--
i proCoq1.NW_012142813v1    I 8 I 2
s otoGar3.GL873530             654610 69 -  36342412 CATTATCCAGCCTCACCTGAGGTTAAAATCC---CCTTGCCC-TGACTCAGAGACCACCCACCCTTCATGTAA--
i otoGar3.GL873530          C 0 I 2
s mm10.chr7                  81371526 56 + 145441459 AATTGCTCAG------------TTAATCTCC---TCTTGCTA-TGACTCAG-GGCTACCCAACTTTCACATAT--
i mm10.chr7                 I 1 I 2
s canFam3.chr3               54431605 69 +  91889043 --CCACCCAGCCTCACCTGAGGTTAAAATTATTCCCCTGCCA-TAATTCAGAGACCACCTA-TCCTCGTATAC--
i canFam3.chr3              C 0 I 2
s dasNov3.JH570731            1826703 74 +   3943991 CATTACCCAGCCTAAACCCAAGTGAAAATTCCTTACCTGCTA-TGATTCTGGGACCACGTATCCTTCATATATAG
i dasNov3.JH570731          C 0 C 0

a score=421898.000000
s hg38.chr15_KI270850v1_alt    360016 29 +    430880 CTCCCTGGTTTTTAAAACCA----CTGAGTAAT
s panTro5.chr15              63513423 29 +  83230942 CTCCCTGGTTTTTAAAACCA----CTGAATAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80470509 29 +  99763055 CTCCCTGGTTTTTAAAACCA----CTGAATAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        70701 29 -   1709092 CTCCCTGGTTTTTAAAACCA----CTGAGTAAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17230165 29 - 121039945 CTCCCTGGTTTTTAAAACCA----CTGAGTAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60910757 29 + 169600520 CTCCCTGGTTTTTAAAACCA----CTGAGTAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108437499 29 - 171882078 CTCCCTGGTTTTTAAAACCA----CTGAGTAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        50870 29 -   2311642 CTCCCTGGTTTTTAAAACCA----CTGAGTAAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        46440 29 -   1987038 CTCCCTGGTTTTTAAAACCA----CTGAGTAAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21126720 29 -  24206276 CTCCCTGGTTTTTAAAACCA----CTGAGTAAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        49535 29 -   1397330 CTCCCTGGTTTTTAAAACCA----CTGAGTAAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        65317 29 -   1784207 CTCTCTGGTTTTTAAAACCA----CTGAGTAAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22268041 31 + 158406734 CTCCCTAGTTTTT--AGCCAGAATTAAAGTAAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50499106 29 +  54856640 CTCCCTAGTTTTTAAAGCCA----CTGAGTAAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       642118 29 -   2910086 CTCCCTAGTTTTTAAAGCCA----CTGAGTAAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40669716 29 +  42888418 CTCCCTAGTTTTTAAAGCCA----CTGAGTAAT
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        37942 29 +     80520 CTCCTCAGTTTTAAAAGCCA----TTGAGAAAC
i proCoq1.NW_012142813v1    I 2 I 4
s otoGar3.GL873530             654681 29 -  36342412 CTCCCTAGTTTTCAAAACTG----CTGAGAAAC
i otoGar3.GL873530          I 2 I 4
s mm10.chr7                  81371584 28 + 145441459 CTCTTTAGTTTT-AAAACCA----CTAAACAGA
i mm10.chr7                 I 2 I 1
s canFam3.chr3               54431676 29 +  91889043 GTCCCTAGTTTTAAAAACCA----CTGAGAAAC
i canFam3.chr3              I 2 I 4
s dasNov3.JH570731            1826777 29 +   3943991 CCACCTAGTTTTAAAAGCCA----CTGAAAAAT
i dasNov3.JH570731          C 0 I 4
e micMur3.chr9              113292966 35 + 116334831 I

a score=27526679.000000
s hg38.chr15_KI270850v1_alt    360045 1453 +    430880 TCTGGTCATCCAGTAATCAACCCCTTAAC-TCCCCTCCCCCACCTAAAAGTG-TTTTGCTTCATCATCTCCAAGACAGGCCTGGGCACCAGGGGGTTAGCTGGATCTTTTCTGCA-CAAGGCCACCACGCCTTGGGGACCCTCCTCAGGGCCACTCCAGGTGCAGACTAACAACTCCAGGGAATTTATCAGGGTAAGTGGAAGAGCCATGCCTGCCTTTACGTGGAG---CCATCTGTCCTGCCACACTCACAGCTTGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGT-----------GTGTATGGTGGGGAG--TGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATATCTTC-GTTCACCACCCC---C-ATGCATCCCCTTACCCCAGCCAACT-----CATTCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGTTTTGGAAAGGAGCAC----AGCA----GAAACCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATATTATTAATAATAGTTTCCCCAGGCTCACAGGCCAGACATCCAAGCTGGCTGGAT------GCTGCAGCCGCTGCCTCTGCAC-----TTTTGGGGACGCTGGGGCAAGAGCAGTTGCCATACAGGCCCCCTCCCCTCACACACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCA-GGGAAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGTTAAGTCTGGGTTGCAAGGCAGCG----CCCTCCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTCACGCACGACTGAAGTCCTCTCCGCCGACAGCAGAGCC------AAAGCA--GCC-GACTGC----------CTGCTCGTGTGGctctgccctcctgcccctc-------cctttccctc-cccctgctctccacccccAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAGTCCTGCTAGCAAAA---------------------ATCTGTG--CTCCAAGTGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAAGATAACCTTCAGAAAAATACTGTACACTTGGACCCTGGGGAACAACACCTGGTGTTCCAGGCTTGTCTAGAGCAGCTTATCACAGAG-AAAGGGGGTAAGCGTTGG
s panTro5.chr15              63513452 1453 +  83230942 TCTGGTCATCCAGTAATCAACCCCTTAAC-TCCCCTCCCCCACCTAAAAGTG-TTTTGCTTCATCATCTCCAAGACAGGCCTGGGCACCAGGGGGTTAGCTGGATCTTTTCTGCA-CAAGGCCACCACACCTTGGGGACCCTCCTCAGGGCCACTCCAGGTGCAGACTAACAACTCCAGGGAATTTATCAGGGTAAGTGGAAGAGCCATGCCTGCCTTTACGCGGAG---CCATCTGTCCTGCCACACTCACAGCTTGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGT-----------GTGTATGGTGGGGAG--TGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATATCTTC-GTTCACCACCCC---C-ATGCATCCCCTTACCCCAGCCAACT-----CATTCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAGGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGTTTTGGACAGGAGCAC----AGCA----GAAACCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATATTATTAATAATAGTTTCCCCAGGCTCACAGGCCAGACATCCAAGCTGGCTGGAT------GCTGCAGCCGCTGCCTCTGCAC-----TTTTGGGGACGCTGGAGCAAGAGCAGTTGCCATACAGGCCCCCTCCCCTCACACACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCA-GGGAAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----CCCTCCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTTACGCACGACTGAAGTCCTCTCCGCCGACAGCAGAGCC------AAAGCA--GCC-AACTGC----------CTGCTCGTGTGGctctgccctcctgcccctc-------cctttccctc-cccctgctctccacccccAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAGTCCTGCTAGCAAAA---------------------ATCTGTG--CTCCAAGTGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAAGAAGATAACCTTCAGAAAAATACTGTACACTTGGACCCTGGGGAACAACACCTGGTGTTCCAGGCTTGTCTAGAGCAGCTTATCACAGAG-AAAGGGGGTAAGCGTTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80470538 1453 +  99763055 TCTGGTCATCCAGTAATCAACCCCTTAAC-TCCCCTCCCCCACCTAAAAGTG-TTTTGCTTCATCATCTCCAAGACAGGCCTGGGCACCAGGGGGTTAGCTGGATCTTTTCTGCA-CAAGGCCACCACACCTTGGGGACCCTCCTCAGGGCCACTCCAGGTGCAGACTAACAACTCCAGGGAATTTATCAGGGTAAGTGGAAGAGCCATGCCTGCCTTTACGCGGAG---CCATCTGTCCTGCCACACTCACAGCTTGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGT-----------GTGTATGGTGGGGAG--TGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATATCTTC-GTTCACCACCCC---C-ATGCATCCCCTTACCCCAGCCAACT-----CATTCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAGGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGTTTTGGACAGGAGCAC----AGCA----GAAACCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATATTATTAATAATAGTTTCCCCAGGCTCACAGGCCAGACATCCAAGCTGGCTGGAT------GCTGCAGCCGCTGCCTCTGCAC-----TTTTGGGGACGCTGGAGCAAGAGCAGTTGCCATACAGGCCCCCTCCCCTCACACACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCA-GGGAAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----CCCTCCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTCACGCACGACTGAAGTCCTCTCCGCCGACAGCAGAGCC------AAAGCA--GCC-AACTGC----------CTGCTCGTGTGGctctgccctcctgcccctc-------cctttccctc-cccctgctctccacccccAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAGTCCTGCTAGCAAAA---------------------ATCTGTG--CTCCAAGTGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAAGAAGATAACCTTCAGAAAAATACTGTACACTTGGACCCTGGGGAACAACACCTGGTGTTCCAGGCTTGTCTAGAGCAGCTTATCACAGAG-AAAGGGGGTAAGCGTTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        70730 1451 -   1709092 TCTGGTCATCCAGTAATCAACCCCTTAAC-TCCCCTCCCCCACCTAAAAGTG-TTTTGCTTCATCATCTCCAAGACAGGCCTGGGCACCAGGGGGTTAGCTGGATCTTTTCTGCA-CAAGGCCACCA--CCTTGGGGACCCTCCTCAGGGCCACTCCAGGTGCAGACTAACAACTCCAGGGAATTTATCAGGGTAAGTGGAAGAGCCATGCCTGCCTTTACACGGAG---CCATCTGTCCTGCCACACTCACAGCTTGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGT-----------GTGTATGGTGGGCAG--TGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATATCTTC-GTTCACCACCCC---C-ATGCATCCCCTTACCCCAGCCAACT-----CATTCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCCTGCGCAGAGGTTGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGACAGGAGCAC----AGCA----GAAACCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATATTATTAATAATAGTTTCCCCAGGCTCACAGGCCAGACATCCAAGCTGGCTGGAT------GCTGCAGCCACTGCCTCTGCAC-----TTTTGGGGGCGCTGGGGCAAGAGCAATTGCCATACAGGCCCCCTCCCCTCACACACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCA-GGGAAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----CCCTCCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTCACGCACGACTGAAGTCCTCTCCGCCGACAGCAGAGCC------AAAGCA--GCC-GAATGC----------CTGCTCATGTGGCTCTGCCCTCCTGCCCCTC-------CCTTTCCCTC-CCCCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAGTCCTGCTAGCAAAA---------------------ATCTGTG--CTCCAAGTGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAAGATAACCTTCAGAAAACTACTGTACACTTGGACCCTGGGGAACAACACCTGGTGTTCCAGGCTTGTCTACAGCAGCTTATCACAGAG-AAAGGGGGTAAGCTTTGG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17230194 1450 - 121039945 TCTGGTCATCCAGTAATCAACCCCTTAAC-TCCCCTCCCCCACCTAAAAGTG-TTTTGCTTCATCATCTCCAAGACAGGCCTGGGCACCAGGGGGTTAGCTGGATCTTTTCTGCA-TAAGGCCATCA--CCTTGGGGACCCT-CTCAGGGCCACTCCAGGTGCAGACTAACAACTCCAGGGAATTTATCAGGGTAAGTGGAAGAGCCATGCCTGCCTTTATGCGGAG---CCATCTGTCCTGCCACACTCACAGCTACCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGT-----------GTGTATGGTGGGGAG--TGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATATCTTC-GTTCACCACCCC---C-ATGCATCCCCTTACCCCAGCCAACT-----CATTCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGACAGGAGCAC----AGCA----GAAACCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAAAAGTAAATATTATTAATAATAGTTTCCCCAGGCTCACAGGCCAGACATCCAAGCTGGCTGGAT------GCTGCAGCCGCTGCCTCTGCAC-----TTTTGGGGGCGCTGGGGCAAGAGCAGTTGCCATACAGGCCCCCTCCCCTCACACACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATCGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCG-GGGAAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCTGGTAAGTCTGGGTTGCAAGGCAGCG----CCCTCCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTCACGCACGACTGAAGTCCTCTCCGCTGACAGCAGAGCC------AAAGCA--GCC-GACTGC----------CTGCTCGTGTGGCTCTGCCCTCCTGCCCCTC-------CCTTTCCCTC-CCCCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAGTCCTGCTAGCAAAA---------------------ATCTGTG--CTCCAAGTGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAAGATAACCTTCAGAAAAACACTGTACACTTGGACCCTGGGGAACAACACCTGGTGTTCCAGGCTTGCCTAGAGCAGTTTATCACAGAG-AAAGGGGGTAAGCTTTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60910786 1452 + 169600520 TTTGGTCATCCAGTAATCAACCCCTTAACTTCCCCTCCCCCACCTAAAAGTG-TTTTGCTTCATCATCTCCAAGACAGGCCTGGACACCAGGGGGTTAGCTGGATCTTTTCTGCA-TAACGCCATCA--CCTTGGGGACCCTCCTCAGGGCCACTCCAGGTGCAGACTAACAACTCCAGGGAATTTATCAGGGTAACTGGAAGAGCTATGCCTGCCTTTACGCGGAG---CCATCTGTCCTGCCACACTCACAGCTAGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGT-----------GTGTATGGTAGGGAG--TGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATAGCTTC-ATTCACCACCCC---C-ATGCATCCCCTTACCCCAGCCAACT-----CATCCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGACAGGAGCAC----AGCA----GAAATCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATGTTATTAATAATAGTTTCCCCAGCCTCACGGGCCAGACATCCAAGCTGGCTGGAT------GCTGCAGCCGCTGCCTCTGCAC-----TTTTGGGGGTGTTGGGTCAAGAGCGGTTGCCATACAGGCCCCCTCCCCTCACACACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCA-GGGAAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----ACCTTCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTCAGGAACGACTGAAGTCCTCTCCGCCGACAGCAGAGCC------AAAGCA--GCC-GAATGC----------CTGCTTGTGTGGCTCTGCCCTCCTGCCCCTC-------CCTTTCCCTC-CCTCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAGTCCTGCTAGCAAAA---------------------ATCTGTG--CTCCAAGAGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAAGATAACCTTCAGAAAAACACTGTATACTTGGACTGTGGGGAACAACACCTGGTGTTCCAGGCTTGTCTAGAGCAGCTTATCACAGAG-AAAGGGGGTAAGCTTTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108437528 1452 - 171882078 TTTGGTCATCCAGTAATCAACCCCTTAACTTCCCCTCCCCCACCTAAAAGTG-TTTTGCTTCATCATCTCCAAGACAGGCCTGGACACCAGGGGGTTAGCTGGATCTTTTCTGCA-TAACGCCATCA--CCTTGGGGACCCTCCTCAGGGCCACTCCAGGTGCAGACTAACAACTCCAGGAAATTTATCAGGGTAACTGGAAGAGCTATGCCTGCCTTTACGCGGAG---CCATCTGTCCTGCCACACTCACAGCTAGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGT-----------GTGTATGGTAGGGAG--TGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATAGCTTC-ATTCACCACCCC---C-ATGCATCCCCTTACCCCAGCCAACT-----CATCCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGACAGGAGCAC----AGCA----GAAATCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATGTTATTAATAATAGTTTCCCCAGCCTCACGGGCCAGACATCCAAGCTGGCTGGAT------GCTGCAGCCGCTGCCTCTGCAC-----TTTTGGGGGCGTTGGGTCAAGAGCGGTTGCCATACAGGCCCCCTCCCCTCACACACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCA-GGGAAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----ACCTTCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTCAGGAACGACTGAAGTCCTCTCCGCCGACAGCAGAGCC------AAAGCA--GCC-GAATGC----------CTGCTTGTGTGGCTCTGCCCTCCTGCCCCTC-------CCTTTCCCTC-CCTCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAGTCCTGCTAGCAAAA---------------------ATCTGTG--CTCCAAGAGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAAGATAACCTTCAGAAAAACACTGTATACTTGGACTCTGGGGAACAACACCTGGTGTTCCAGGCTTGTCTAGAGCAGCTTATCACAGAG-AAAGGGGGTAAGCTTTGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        50899 1452 -   2311642 TTTGGTCATCCAGTAATCAACCCCTTAACTTCCCCTCCCCCACCTAAAAGTG-TTTTGCTTCATCATCTCCAAGACAGGCCTGGACACCAGGGGGTTAGCTGGATCTTTTCTGCA-TAACGCCATCA--CCTTGGGGACCCTCCTCAGGGCCACTCCAGGTGCAGACTAACAACTCCAGGGAATTTATCAGGGTAACTGGAAGAGCTATGCCTGCCTTTACACGGAG---CCATCTGTCCTGCCACACTCACAGCTAGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGT-----------GTGTATGGTAGGGAG--TGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATAGCTTC-ATTCACCACCCC---C-ATGCATCCCCTTACCCCAGCCAACT-----CATCCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGACAGGAGCAC----AGCA----GAAATCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATGTTATTAATAATAGTTTCCCCAGCCTCACGGGCCAGACATCCAAGCTGGCTGGAT------GCTGCAGCCGCTGCCTCTGCAC-----TTTTGGGGGCGTTGGGTCAAGAGCGGTTGCCATACAGGCCCCCTCCCCTCACACACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCTCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCA-GGGAAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----ACCTTCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTCAGGAACGACTGAAGTCCTCTCCGCCGACAGCAGAGCC------AAAGCA--GCC-GAATGC----------CTGCTTGTGTGGCTCTGCCCTCCTGCCCCTC-------CCTTTCCCTC-CCTCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAGTCCTGCTAGCAAAA---------------------ATCTGTG--CTCCAAGAGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAAGATAACCTTCAGAAAAACACTGTATACTTGGACTCTGGGGAACAACACCTGGTGTTCCAGGCTTGTCTAGAGCAGCTTATCACAGAG-AAAGGGGGTAAGCTTTGG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        46469 1452 -   1987038 TTTGGTCATCCAGTAATCAATCCCTTAACTTCCCCTCCCCCACCTAAAAGTG-TTTTGCTTCATCATCTCCAAGACAGGCCTGGACACCAGGGGGTTGGCTGGATCTTTTCTGCA-TAAGGCCATCA--CCTTGGGGACCCTCCTCAGGGCCACTCCAGGTGCAGACTAACAACTCCAGGGAATTTATCAGGGTAACTGGAAGAGCTATGCCTGCCTTTACGCGGAG---CCATCTGTCCTGCCACACTCACAGCTAGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGT-----------GTGTATGGTAGGGAG--TGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATAGCTTC-ATTCACCACCCC---C-ATGCATCCCCTTACCCCAGCCAACT-----CATCCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGACAGGAGCAC----AGCA----GAAATCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATGTTATTAATAATAGTTTCCCCAGCCTCACGGGCCAGACATCCAAGCTGGCTGGAT------GCTGCAGCCGCTGCCTCTGCAC-----TTTTGGGGGCGTTGGGTCAAGAGCGGTTGCCATACAGGCCCCCTCCCCTCACACACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCA-GGGAAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----ACCTTCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTCAGGAACGACTGAAGTCCTCTCCGCCGACAGCAGAGCC------AAAGCA--GCC-GAATGC----------CTGCTTGTGTGGCTCTGCCCTTCTGCCCCTC-------CCTTTCCCTC-CCTCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAGTCCTGCTAGCAAAA---------------------ATCTGTG--CTCCAAGAGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAAGATAACCTTCAGAAAAACACTGTACACTTGGACTCTGGGGAACAACACCTGGTGTTCCAGGCTTGTCTAGAGCAGCTTATCACAGAG-AAAGGGGGTAAGCTTTGG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21126749 1452 -  24206276 TTTGGTCATCCAGTAATCAACCCCTTAACTTCCCCTCCCCCACCTAAAAGTG-TTTTGCTTCATCATCTCCAAGACAGGCCTGGACACCAGGGGGTTAGCTGGATCTTTTCTGCA-TAAGGCCATCA--CCTTGGGGACCCTCCTCAGGGCTACTCCAGGTGCAGACTAACAACTCCAGGGAATTTATCAGGGTAACTGGAAGAGCTATGCCTGCCTTTACGTGGAG---CCATCTGTCCTGCCACACTCGCAGCTAGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGT-----------GTGTATGGTAGGGAG--TGATGCAAAGGGGAATAGAACAACTGTTGCTGTGGATAGCTTC-ACTCACCACCCC---C-ATGCATCCCCTTACCCCAGCCAACT-----CATCCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGAAAAAGCATCCTGCCTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGACAGGAGCAC----AGCA----GAAATCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATGTTATTAATAATAGTTTCCCCAGCCTCACGGGCCAGACATCCAAGCTGGCTGGAT------GCTGCAGCCGCTGCCTCTGCAC-----TTTTGGGGGCGTTGGGTCAAGAGCGGTTGCCATACAGGCCCCCTCCCCTCACACACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCA-GGGAAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----ACCTTCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTCAGGAACGACTGAAGTCCTCTCCGCCGACAGCAGAGCC------AAAGCA--GCC-GAATGC----------CTGCTTGTGTGGCTCTGCCCTCCTGCCCCTC-------CCTTTCCCTC-CCTCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAGTCCTGCTAGCAAAA---------------------ATCTGTG--CTCCAAGAGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAAGATAACCTTCAGAAAAACACTGTACACTTGGACTCTGGGGAACAACACCTGGTGTTCCAGGCTTGTCTAGAGCAGCTTATCACAGAG-AAAGGGGGTAAGCTTTGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        49564 1452 -   1397330 TTTGGTCATCCAGTAATCAACCCCTTAACTTCCCCTCCCCCACCTAAAAGTG-TTTTGCTTCATCATCTCCAAGACAGGCCTGGACACCAGGGGGTTAGCTGGATCTTTTCTGCA-TAAGGCCATCA--CCTTGGGGACCCTCCTCAGGGCCACTCCAGGTGCAGACTAACAACTCCAGGGAATTTATCAGGGTAACTGGAAGAGCTATGCCTGCCTTTACGCGGAG---CCATCTGTCCTGCCACACTCACAGCTAGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGT-----------GTGTATGGTAGGGAG--TGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATAGCTTC-ATTCACCACCCC---C-ATGCATCCCCTTACCCCAGCCAACT-----CATCCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGACAGGAGCAC----AGCA----GAAATCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATGTTATTAATAATAGTTTCCCCAGCCTCACGGGCCAGACATCCAAGCTGGCTGGAT------GCTGCAGCCGCTGCCTCTGCAC-----TTTTGGGGGCGTTGGGTCAAGAGCGGTTGCCATACAGGCCCCCTCCCCTCACACACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCA-GGGAAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----ACCTTCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTCAGGAACGACTGAAGTCCTCTCCGCCGACAGCAGAGCC------AAAGCA--GCC-GAATGC----------CTGCTTGTGTGGCTCTGCCCTTCTGCCCCTC-------CCTTTCCCTC-CCTCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAGTCCTGCTAGCAAAA---------------------ATCTGTG--CTCCAAGAGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAAGATAACCTTCAGAAAAACACTGTACACTTGGACTCTGGGGAACAACACCTGGTGTTCCAGGCTTGTCTAGAGCAGCTTATCACAGAG-AAAGGGGGTAAGCTTTGG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        65346 1450 -   1784207 TTTGATCATCCAGTAATC--------AACTTCCCCTCCCCCACCTAAAAGTG-TTTTGCTTCATCATCTCCAAGACAGGCCTGGGCACCAGGGGGTTAGCTGGATCTTTTCTGCA-TAAGGCCATCA--CCTTGGGGACCCTCGTCAGGGCCACTCCAGGTGCAGACTAACAACTCCAGGGAATTTATCAGGGTAACTGGAAGAGCTATGCCTGCCTTTACGTGGAG---CCATCTGTCCTGCCACACTCACAGCTAGCATTTCCATCTCTTGCAAAATAGCTCCATGTTGTATGT-----------GTGTATGGTAGTGAG--TGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATAGCTTC-GTTCACCACCCC---C-ATGCATCCCCTTACCCCAGCCAACT-----CATCCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCTGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGACAGGAGCAC----AGCA----GAAACCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATGTTATTAATAATAGTTTCCCCAGCCTCACGGGCCAGACATCCAAGCTGGCTGGATGCTGCAGCTGCAGCCGCTGCCTCTGCAC-----TTTTGGGGGCGCTGGGTCAAGAGCGGTTGCCATACAGGCCCCCTCCCCTCACACACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCA-GGGAAAGACAGCACAACAGCTACTTGGAATAGTCCCAGTGCAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----ACCTTCGGTCTC---CAGCAATGGTGGCCAAGCAGCCCTCAGGAACGACTGAAGTCCTCTCCGCCGACAGCAGAGCC------AAAGCA--GCC-GAATGC----------CTGCTCATGTGGCTCTGCCCTCCTGCCCCTC-------CCTTTCCCTC-CCTCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCCCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAGTCCTGCTAGCAAAA---------------------ATCTGTG--CTCCAAGAGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAAGATAACCTTCAGAAAAACACTGTACACTTGGACCCTGGGGAACAACACCTGGTGTTCCAGGCTTGTCTAGAGCAGCTTATCACAGAG-AAAGGGGGTAAGCTTTGG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22268072 1430 + 158406734 TCTGGTCATCCAGTAATCAGCCCCTTAAC-TCCCCTCCCCCACCTTAAAGTG-TTTTGCTTCATCATCTCCAAGACAGGCCTGTGCACCAGAGGGTTAGCTGGATCTTTTCTGCA-TAAGGCCATCA--CCTTGGGGACCCTCCTCAGGGGCACTCCAGGTGCAGGCTAACAACTC------------CAGGGTAAGTGGAAGAGGCATGCCTGCTTTTACGTGGAG---CCATCTGTCCTGCCACATTCACAGCTAGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGT-----------GTGTATGGTGGGGAG--TGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGTTATCTTT-GTTCACCACCCC---C-ATGCATCCCCTTCCCCCAGCCAACT-----CATTCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCCGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGAAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCGTTGGACAGGAGCAC----AGCA----GAAACCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATATTATTAATAATAGTTTCCCCAGGCTCATGGGCCAGACATCCAAGCTGGCTGGAT------GCTGCAGCCGCTGCCTCTGCAC-----TTTTGGGGGCGTTGGAATGAGAGCAGTTGCCATACAGGCCCCCTCCC--CACACACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACAACAGGGAGGAGACTTGCCTCCCA-GGGAAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----CCCTCCAATCTC---CAGCAATGGTGGCCAAGCAGCCCTCAGGCACGACTGAAGTCCTCTCTGCTGACAGCAAAGCC------AAAGCA--GCC-GACTGC----------CTGCTTGTGTGGCTCTGCCCTCCTGCCCCTC-------CCTTTCCCTC-CCTCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAATCCTGCTAGCAAAA---------------------ATCTGTGTGCTCCAAGTGGCCCCTGAGCAGCACTCTGACACAGCAGTGTTTACCACTGAGAAGCAAGATAACCTTCAGAAAAACAATGTACACTTGGAC---------CAACACCTGGTGTTCCAGGCTTGTCTAGAACAGCTTATCACAGAG-AAGGGGGGTCGGTTTTGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50499135 1450 +  54856640 TCTGGTCATCCAGTAATCAG-CCCTTAAC-TCCCCTCCCCCACCTAAAAGTG-TTTTGCTTCATCATCTCCAAGACAGGCCTGGGCACCAGGGGGTTAGCCGGATCTTTTCTGCA-TAAGGCCATCA--CCTTGGGGACCCTCCTCAGGGGCACTCCAGGTGCAGGCTAACAACTCCAGGGGATTTATCAGGGTAAGTGGAAGAGGCATGCCTGCTTTTACGTGGAG---CCATCTGTCCTGCCACACTTACAGCTAGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGT-----------GTGTATGGTGGGGAG--TGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATATCTTC-GTTCACCACCCC---CAATGCACCCCTTTCCCTCAGCCAACT-----CATTCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCCGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGAAAAAGCATCCTGCTTGTGACTGTTTCTTCAGAGTCCTGGAAGTCTGCGTTGGACAGGAGCAC----AGCA----GAAATCTCAGAGTTAAGGGCTGTTTTCCCCAATATTACCAACAGTAAATATTATTAATAATAGTTTCCCCAGGCTCGCGGGCCAGACATCCAAGCTGGCTGGAT------GCTGCAGCCGCTGCCTCTGCAC-----TTTTGGGGGCGTTGGAACAAGAGCAGTTGCCATACAGGCCCCCTCCC--CACACACAC-CCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACAACAGGGAGGAGACTTGCCTCCCA-GGGAAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGGTAAGTATGGGTTGCAAGGCAGCG----CCCTCCGATCTC---CAGCAATGGTGGCCAAGCAGCCCTCAGGCACGACTGAAGTCCTCTCTGCTGACAGCAAAGCC------AAAGCA--GCC-GACTGC----------CTGCTTGTGTGGCTCTGCCCTCCTGCCCCTC-------CCTTTCCCTC-CCTCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAACGCAAAGCTTCACAATCCTGCTAGCAAAA---------------------ATCTGTGTGCTCCAAGTGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAAGATAACCTTCAGAAAAACAATGTACACTTGGACCCTGGGGAACAACACCTGGTGTTCCAGGCTTGTCTAGAACAGCTTATCACAGAG-AAAGGGGGTCAGTTTTGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       642147 1452 -   2910086 TCTGGTCATCCAGTAATCAGCCCCTTAAC-TCCCCTCCCCCACCTAAAAGTG-TTTTGCTTCATCATCTCCAAGACAGGCCTGGGCACCAGGGGGTTAGCTGGATCTTTTCTGCA-CAAGGCCATCA--CCTTGGGGACCCTCCTCAGGGGCACTCCAGGTGCAGGCTAACAACTCCAGGGGATTTATCAGGGTAAGTGGAAGAGGCATGCCTGCTTTTACGGGGAG---CCATCTGTCCTGCCACACTCACAGCTAGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGT-----------GTGTATGGTGGGGAG--TGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATATCTTC-GTTCACCAGCCC---C-ATGCATCCCCTTCCCCCAGCCAACT-----CATTCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCCGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGAAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCGTTGGATAGGAGCAC----AGCA----GAAACCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATATTACTAATAATAGTTTCCCCAGGCTCACGGGCCAGACATCCAAGCTGGCTGGAT------GCTGTAGCCGCTGCCTCTGCAC-----TTTTGGGGGCGTTGGAACAAGAGCAGTTGCCATACAGGCCCCCTCCC--CACAAACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACAACAGGGAGGAGACTTGCCTCCCA-GGGAAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTACAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----CCCTCCGATCTC---CAGCAATGGTGGCCAAGCAGCCCTCAGGCACGACTGAAGTCCTCTCTGCTGACAGTAAAGCC------AAAGCA--GCC-GACTGC----------CTGCTTGTGTGGCTCTGCCCTCCTGCCCCTC-------CCTTTCCCTC-CCTCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAATCCTGCTAGCAAAA---------------------ATCTGTGTGCTCCAAGTGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAAGATAACCTTCAGAAAAACAATGTACACTTGGACCCTGGGGAACAACACCTGGTGTTCCAGGCTTGTCTAGAACAGCTTATCACAGAGAAAGGGGGGTCGGTTTTGG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40669745 1451 +  42888418 TCTGGTCATCCAGTAATCAGCCCCTTAAC-TCCCCTCCCCCACCTAAAAGTG-TTTTGCTTCATCATCTCCAAGACAGGCCTGGGCACCAGGGGGTTAGCTGGATCTTTTCTGCA-TAAGGCCATCA--CCTTGGGGACCCTCCTCAGGGGCACTCCAGGTGCAGGCTAACAACTCCAGGGGATTTATCAGGGTAAGTGGAAGAGGCATGCCTGCTTTTACGTGGAG---CCATCTGTCCTGCCACACTCACAGCTAGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATGT-----------GTGTACGGTGGGGAG--TGATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATATCTTC-GTTCACCACCCC---C-ATGCATCCCCTTCCCCCAGCCAACT-----CATTCCCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCCGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTTGGAAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCGTTAGACAGGAGCAC----AGCA----GAAACCTCAGAGTTAAGGGCTGTTTTCCCCAATATTATCAACAGTAAATATTATTAATAATAGTTTCCCCAGGCTCACAGGCCAGACATCCAAGCTGGCTGGAT------GCTGCAGCCGCTGCCTCTGCAC-----TTTTGGGGGCGTTGGAACAAGAGCAGTTGCCATACAGGCCCCCTCCC--CACACACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACAACAGGGAGGAGACTTGCCTCCCA-GGGAAAGACAGCACAACAGCTACTTGGAATAGTCCCGGTGCAGTGCCGGTAAGTCTGGGTTGCAAGGCAGCG----CCCTCCGATCTC---CAGCAATGGTGGCCAAGCAGCCCTCAGGCACGACTGAAGTCCTCTCTGCTGACAGCAAAGCC------AAAGCA--GCC-GACTGC----------CTGCTTGTGTGGCTCTGCCCTCCTGCCCCTC-------CCTTTCCCTC-CCTCTGTTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAATCCTGCTAGCAAAA---------------------ATCTGTGTACTCCAAGTGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGGACAAGATAACCTTCAGAAAAACAATGTACACTTGGACCTTGGGGAACAACACCTGGTGTTCCAGGCTTGTCTAGAACAGCTTATCACAGAG-AAAGGGGGTCGGTTTTGG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113293001 1428 + 116334831 TCTGGTCCTCCAGTAATGAGCCCC-TAAG-TCCCCTCCCCCACCC-AAAGTG-TTTTGCTTCATCATCTCTAAGACAGGCCTGGGCACCAGGGGGTTAGCTGGATCTGTTCTGCA-TAAAGCTGTCA--CCTTGGGAACCTTTCTCAGGGCCACCCCAGGTATAGACTAACAACTCCAGGGAATTTATCAGGGTAAGTGGAAAAGCCATGCCTGCCTTTACGAGCAG---CCATCTGTCCTGCCACACTCACAGCTAGCATTTCCATTTCTTGCAAAACAGCTCCATGTTGTGTGT-----------GTAT--------GGG--GGATGCCAAGGGGAACAGAACAACTGTTGCTGTGGAAATCTTCGGTTCACCACCCC-----ATACATTCCCCTCCCCCAGCCAACT-----CATTCTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAGTCTGAGTCCTGGGTGCTCCAGGGCCGGTCCCAGCCGGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCGTGCGCAGAAGTGGGGAAAAGCATCCTCCTTGAAACTGTTTCTTCAGAATCCTGGAAGTCTGCTTTGGACAGGAGAAC----AGCA----GAAACCCCAGAGTTAAGGGCTGTTTTCCCCAATCTTATCGATAGTAAATATTGTTGAGAATAGTTTCTCCAGGCTCAGGGGCCAGACGTCCAAGCTGGCTGGAT------GCTGCAGCCGCTGCCTCTGCAC-----TTTTGGGGGCGTTAGAGCAAGAGCAGTTGCCATACA-GCCCCCTCCC--CACACACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCAGCACCATCCCTCACAGAAC-----------GGGGGAGGAGCAGCAGGGGACAACAGGGAGGAGACTTGCCTCCCAGGGAAAAGACAGCACAACAGCTACTTGGAATACTCCGGGTGCAGTGCTGGTAAGTCAGGGTTTCAAGGCAATG----CCCTCCGGTCTC---CA----------------GGCCCTCAGACACGAATGAAGTCCTCTCTGCCGACAG-AAAGCC-AAAGCAAAGCC--TCC-AACTGC----------CTGCTTGTGTAGCTCTGCCCTCCTGCCCCTC-------CCCTTCCCTC-CCTCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGATGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGGAAAGCTTCAAAACCCTGCTAGCAAAA---------------------ATCTACGTGCTCCAAGTGGCCCCTGAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAACAG-ATAACCTTCAGAACAACACTGTACACTTGGACCCTGGGGGACAACACCTGGTGCTCTAGGCTTGTCAGTAGCAGCTTATTACAGAG-AAAAAGGGTCAGCTTGGG
i micMur3.chr9              I 35 I 12
s proCoq1.NW_012142813v1        37975 1449 +     80520 TCTGGTCCTCCAGTAAGGAACCCCTTAAG-TCCCCTCCCCCACCT-AAAGTG-TTTTGCTTCATCATCTCTAAGACAGGCCTGGGCACCAGGGGGTTAGCTGGATCTGTTCTGCA-TAAGGCTGTCA--CCTTGGGAACCCTTCTCAGGGCCACCCCAGGTGTAGACTAACAACTCCAGGGAATTTAGCAGGGTAAGTGGAAAAGCCATGCCTGCCTTTACGAGCAG---CCATCTGTCCTGCCACACTCACAGCTAGCATTTCCATTTCTTGCAAAACAGCTCCATGTTGTGTGT-----------GTAT-------GGGG--GGATGCCAAGGGGAACAGAACAACTGTTGCTGTGGATATCTTCGGTTCACCACCCC-----ATACATTCCCCTCCCCCAGCCAACT-----CATTCCCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAGTCCGAGTCCTGGGTGCTCCAGGGCCGGTCCCAGCCCGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCACGGGAAGATTCGTGCGCAGAGGTGGGGAAAAGCATCCTCCTTGAAACTGTTTCTTCAGAATCCTGGAAGTCTGCTTTGGACAGGAGAAC----AGCA----GAAACCCCAGAGTTAAGGGCTGTTTTCCCCAATCTTATCAACAGTAAATATTGTTGAGAATAGTTTCTAGAGGCTCAGGGGCCAGGCGTCCAAGCTGGCTGGAT------GCTGCAGCCGCTGCCTCTGCAC-----TTTTGGAGGTGTTAGAGCAAGAGCAGTTGCCATACA-GCCCCCTCCC--CACACACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCAGCACCATCCCTCACAGAAC-----------GGGGGAGGAGCAGGAGGGGACAACAGGGAGGAGACTTGCCTCCCAGGGAAAAGACAGCACAACAGCTACTTGGAATACTCCGGGTGCGGTGCTGGTAAGTCAGGGTTTCAAGGCAGCG----CCCTCCGGTCTC---CAGCAATGGTGGCCAAGCGGCCCTCAGGCACGACTGAAGTCCTCTCTGCCGACAGCAAAGCCAAAAGCAAAGCA--GCC-GACTGC----------CTGCTTGTGTAGCTCTGCCCTCCTACCCCTC-------CCTTTCCCTC-CCTCTGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGATGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCAAAATCCTGCTAGCAAAA---------------------ATCTACGTGCTCCAAGTGGCCCCTGAACAGCATCCTGACACAGCAGTGTTTACCACTGAGGAGCAGAATAACCTTCAGAACAACACTGTACACTTGGACCCTGGGGGACACCACCTGGTGCTCTAGGCTTGTCAGGAGCAGCTTATTACAGAG-AAAAGGGGTCAGCTTAGG
i proCoq1.NW_012142813v1    I 4 C 0
s otoGar3.GL873530             654714 1437 -  36342412 CCTAGCCATCCAGTAATGAGCCCC-TAGG-TCCCCTCCCCCA-CT-AAAGTG-TTTTGCTTCATCATCTCTGAGATAGGCCTGGGCACCAAGGGGTTAGTTGGATTT-TTTTTTA-TAAGGCTGTCA--CCTTGGGAACCCTTCTCAGGGCCACCCCAGGTACAGACTAACAACTCCAGGGAATTTATCAGGGTAAGTAGAAAAGCCATGCCTGCCTTTACCAGCAG---CCAAATGTCCTGCCACACTCACAGCTAGAATTTCTATTTCTTGCAAAACAGCTCCATGTTGTATGT-----------GTAT---------GG--GGGTGCAAAGGGGAATAGTACAACTGTTGCTGTGGGTATCTTTCCTTTCCCACTCC-----ATATGTCCCCCTCCCCCAACCAACT-----CCTCCTCTGGCACTCACCTGAGTGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCGTGGGTGCTCCAGGGTCGGTCCCAGCCCGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCAGGGAGGCCACGGGAAGATTCTTGAGCAGAGGTGGGGAAAAGCATCCTTCTTGAAACTGTCTCTTCAGAATCCTGGAAGTCTGCTTTGGACAGGAGGAC----AGCA----GAAACCCCAGAGTTAAGGGCTGTTTTCCCCTAATCTATCAACAGTAAATATTATTGAGAATAGTTTCTCCAGGCTCAGGGGCCAGACGTCCACGCTGGCTGGAC------GCTGCAGCCACTGCCTCTGCCTCCACACTTTGGGGGCGTCCGAGCAAGAGCAGTT---------GCCCCCTGCC--C-CACACACTCCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCTGGCTGAGCCGTGCAATAGAGAGCAGCACCATCCCTCACGGAAC-----------GGGGGAGGAGCAG--AGGGACAGCAGGGAGGAGACTCGCCTCCCA-GGAGCAGACAGCACAGCAGTTACTCGGAACACTCTGGGTACAGTGCCGGCAAGTCA-GGTTTCAAGGCAGCG----CTCTCC-GTCCC---CAGCGATGGTGGCCAAGCAGCCCTCAGGCATGAGTTAAGTCCTCTCCACC-ACAGCAAACCC-AAAGCAGAGCA--GCC-GACTGCGACTGCCGGTTGGCTTGTGTAGCCCTGCCCTCTTGTCCCTC-------CC-TACCCTC-CCTCTGCTCTCCACCCCCAAACCCCAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCAAGCCCTGGCTTTGCAGCCCAATGCAAAGCTTCACAATCCTGCTAGCAAAA---------------------ACCTGTGTGCTCCAAGTGGCCCCT-AGCAGCACCCTGACACAGCAGTGTTTACCA-TGGGGAGTGGGGTAACCTCCAG---AACACTGTATACTTGGACCCTGGGGAACAGTACCTGGTGTTCTAGGCCTGTGTAGAGAAGCTTATCACAGAG-AAAAGGGGATAGCTCTGG
i otoGar3.GL873530          I 4 C 0
s mm10.chr7                  81371613 1436 + 145441459 TCTGGTCATTCAGTAATCAGTTCCTTAAT-TCCCCTCCCCCACCTAAAAGTG-TTTTGCTTCATCATCTCCAAGACAGGCCTGGGCACCAGGGGCTTAGATGGATCATATCTGCA-TAAGGTTGAAA--CCTTGGGGACCCTTGTCAGGGCTACCTCAGGTGTAGACTTAAAACTCCAGGGAATTTGTCAGGGCAAACAGAAAAGCTGTATCTGCCTTTACCAGCAGTCTCTATCTGTCATGCAACACTCACAGCTA------CCATTGCTTGCAAAACAGCTCTGTGTTGTGTGT-----------ATATA---GAGGGAG--TGATGCAAAGGGGAACAGAACAACTGTTGCTTTGG-TATCTTA-GCTCACCACCCC-----ACTCGGCCCCCTCCCCTAGGCAGCCGCAAGTATTCTCTTGCACTCACCTGACTGTGTGCTGCTCTGGGCTGAGGAGTCTGAGTCCTGGGTGCTCCAGGGTCGGTCCCAGCCAGTCAGACTGAGGGACTGCAGGCCAAGGCACAAGCCATTTGCATCTGGGAGGCCACGGGGAGATTCTTGCGCAGAGGTGGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGAAAGGAGAAC----AGCAAAACAAACCCCTAGAGTTAAGGGTTGTTTTTCTCAATACTATTAACAATAAATACCACCAATATTAGTTTCCTCAGGTTCAGAGGCAAGGTATCCAAGCTGGCTAGCT------GCTGCAGCTGCTGCCTCTGTAC-----TTTTGGCAGCATTCAAGCAAGAATAGTTGCCATATA-GCCCCCTCCC----CACACGCACCCCTATCCCGTCTGCATTACAGACGAGG-TAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCTGGCTGAGCCTAGCAATAGAGAACCGCATCATCTCTCACAGAACGGGGCGGAGGAGGGGGAGGAGCAGGAGGGGACGACTGGGAGGAGACTTGCCTCCAA-GGGAAAGATAGCACAAGAGCTACTTGGAATAGTCT-GATGCAGTATGGTTAAGTCAGGGTTGTGAGAAAGTGCCGTCCCTCCAGTCTCTGTCGGCAATGGTGGCCAAGC-------------------------------------CAAAAGC------AAAGCACTGTG-GACTGC----------TTGCCTGTACTGATCTGTGCTCCTGCCGCTC-------CCTCTCTCTC-CTCCTGCTCTCTA-CCTCAAACCCCTAAACGCAACAGTCCTGGACTTTCTCCAGCTGCTCGCTCAAGCCCTGGCTTTGTAGCC-------------CACAATCCTGCTAACAAAAATAAGTAAGTAAAAAAATAGTATCTGTGTGCTCC-AGTGGCCTCTGAGAAGTATCTTGACACAGCATTGTTTACCACTGAAGAATGGGAAAACCATCAGAAAAACACTGTATATTTGGACCCTTGGGAACAACACCTGGTGCTATGGGACTGTCTGGAGCTGCTTATCATAGAA-AAGAGGGAGCAGCCTTTT
i mm10.chr7                 I 1 I 7
s canFam3.chr3               54431709 1455 +  91889043 TCTGGACATCCAGGGATCAGCCCCTCTGG-TCCCCTCCCCCACCTAAAAGTG-TTTTGCTTCATCATCTCCAAGACAGGCCTGGGCTCGAGGAGGTTAGCTGGATCTTTTCTGCATTAAGACTGTCA--CCTTGGGGACCCTTCTCAGGGCTACCCCAGGTGCAGACTAATAACTCCAGGGAATTTATCAGGGTAAGTGGAAAAGCCATGCCTGCCTTTACAAGCAA---CCATCTGTCCTGCCACACTCACAGCCAGCATTTCCATCTCTTGCAAAACAGCTCCATGTTGTATTG-----------GGGTG-GGGGGGGAG--TGATGCAAAGGGGAAAAGAACAACTGTTGCTGTGGATGTCTTC-GCTCACCACCCCATAC-ACCCCCCCCCCTCCCCCAGCCAACT-----CATTTTCTGGCACTCACCCGAGTGTGTGCTGCTCTGGGCTGAGGAATCCGAGTCCTGGGTGCTCCAGGGTCGGTCGCAGCCTGTGAGACTGAGGGACTGCAGGCCAAGGCACAAGTCATTTGCATCTGGGAGGCCCCGGGAAGAATCTTGCGCAGAGGTGGGGAAAAGCATCCTGCTTGCAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGACAGGAGGAC----AGCA----GAAACCTCAGAGTTAAGGGCTGTTTTCCCCAGTATTATCAACAATAAATATTATTAATAATAGTTTCCCCAAGCCCAAGGAGCAGACATCCAAGCTGGCTGGAT------GCTGTGGCCGCTGCCTCTGCAC-----TTTTGGGGGCGTTAGAGCAAAAGCAGTTGCCATACAGCCCCCCTCCC--CACAAACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAT-----------GGGGGAGGAGCAGGAGGGGACGACAGGGAGGAGACTTGCCTCCCCGGGAAAAGATAGCACAACAGCTACTTGGAACAGTCCGGGTGCAGTGCCGGTAAGTCAGGGTTCTGAGGCAGCG----CCCTCCGGTCTC---CAGCAATGGTGGCCAAGCGGCCCTCGGGCACGACTGAAGTCCTCTCTGCTGACAGCAAAGCC------AAAGCA--GCC-GACTGC----------CTGCTCGTGTAGCTCTGCCCTCCTGCCCCTC-------CCTTCCCCTC-CCTCTGCTCTCCACCCCCAAACCCAAAAACACTCCAGTCCTGGACTCTCTCCAGCTGCTTGCTCAAGCCCTGGTTTTGCAGCCCAATGCAAAGCTTCACAATCCTGCTAGCAAAA---------------------ATCTATGTGCTCCAAGTGGCCCCTAAGCAGCACCCTGACACAGCAGTGTTTACCACTGAGGAATGGGATAACCTTCAGGAAAACACTGCACACCTGGACCCTGGGGACCACCACCTGGTGCTACAGGCTTGTCTACAACAGTTCATCACAGAG-AAAAGGGGTCAGCTTTGG
i canFam3.chr3              I 4 C 0
s dasNov3.JH570731            1826810 1470 +   3943991 TCTAGACATCCAGTGATCAGCCCCTTAAG-TCCCCTCCCCCACCTAAAAGTGTTTTTGCTACATCATCTCCAAGACAGGCCTGAGCATCAGGGG-TTAGCTGGATCTTTTCTGAA-TAAGGCTGTCA--CCTTGGGGACCCTTTTCAGGGCCACTCCAGGTGCAGACTAACAACTCCAGGGAATTTATCAGGGTAAGTAGAAAA-CCATGCCTATCTTTATGAACAA--CCCATCTGTCCTGCCACACTCACAGCCAGCATTTCCATCTCTTACAAAACAGCTCCATGTTGTGTATGGGAAGTGGAGGTATGGGGCAGGAGGGTCAATGCAAAGGGGAACAGAACAACTGTTGCTGTGGATATCTTC-ACTCATCAACTC-----ATACAGCCCCCT-CCCCAGTCAACT-----CATTCTCTGCCACTCACCTGAATGTGTGCTGCTCTGGGCTGAGGAATCTGAGTCCTGGGTGCTCCAGGGTCTGTCCCAGCCTGTCAGACTGAGAGACTGCAGGCCAAGGCACAAGTCGTTTGCATCTGGGAGGCCACGGGAAGATTCTTGCGCAGAGGTGGGGAAAAGCATCCTGCTTGTAACTGTTTCTTCAGAGTCCTGGAAGTCTGCTTTGGACAGGAGGGCAGATAGCA----GAAATCTCAGTGTTAAGACCTGTTTTCTCCaatattattaataataaatattatt---aataGTTTGCCCAGGCTCAGGGACCAGACATCCAAGCTAGCTGGAT------GCTGCAGCCGCTGCCACTGCAC-----TTTTGGGGGCGGCGGAGCAAAAGCAGTTGCCATACAGGCCCCCTCCC----CACACACACCCCTATCCCGTCTGCATTACAGACTGGGCCAGCATGTGATCAGGCTGCTGATGCTTCCCGCTGCCAGTGACATCAGCCGGCTGAGCCGTGCAATAGAGAGCGGCATCATCCCTCACAGAAC-----------GGGGGAGGAGCAGAAGCCGACGACAGGGAGGAGACTTGGCTCCCAGGGAAAAGATAGCACAACAGCTACTTGGAATAGTCTGGGTGCAGTGCCGGTAAGTCAGGGTGGTGAGGCAGCG----CCCTCCTGTCTC---CAGCAATGGTGGCCAAGTGGTCTTCAGGCACAACAGAAGTCCTCTCTGCCGATAGCAATGCC------AAAGCA--GCCAAACTGC----------CTGCTTGTGTAGCTCTGCCCTCATTCCCCCCTCCCCTGCCTTTCCCTCTTCCCAGCTCTCCACCCCCAAACCCAAAAACACTCTAGTCCTGGACTCTCTCCAGCTGCTGGCTCTAGCCCTGGTTTTGCAGCCCAGTGCAAAGCTTCACAATCCTGCTAGCAAAA---------------------ATCTATGTGCTCCAAGTGGTCCACAAGCAGCAGTTTGACACAGCAGTGTTTACCACTGAGGAATGGAGTAACCTTCAGAAAAACACCGTGCACCTGGAC-CTAGGGAACAACACTTCATGCTCTAGGCTTGTCTGGAGCAGCTCATCACAAAG-AAAAGGGGTCAGTTTTGG
i dasNov3.JH570731          I 4 C 0

a score=179818.000000
s hg38.chr15_KI270850v1_alt    361498 16 +    430880 CAGAGTGGGGGAGAGT
s panTro5.chr15              63514905 16 +  83230942 CAGAGTGGGGGAGAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80471991 16 +  99763055 CAGAGTGGGGGAGAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        72181 16 -   1709092 CAGAGTGGGGGAGAGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17231644 16 - 121039945 CAGAGTGGGGGAGAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60912238 16 + 169600520 CAGAGTGGGGGAGAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108438980 16 - 171882078 CAGAGTGGGGGAGAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        52351 16 -   2311642 CAGAGTGGGGGAGAGT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        47921 16 -   1987038 CAGAGTGGGGGAGAGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21128201 16 -  24206276 CAGAATGGGGGAGAGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        51016 16 -   1397330 CAGAGTGGGGGAGAGT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        66796 16 -   1784207 CAGAGTGGGGGAGAGT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22269502 16 + 158406734 CAGAGGATGGGAGAGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50500585 14 +  54856640 CAGAGGATGG--GAGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       643599 16 -   2910086 CAGAGGATGGGAGAGT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40671196 16 +  42888418 CAGAGGATGGGAGAGT
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        39424 15 +     80520 CAGAGGGAGGGGGGT-
i proCoq1.NW_012142813v1    C 0 I 2
s otoGar3.GL873530             656151 15 -  36342412 CAGAGAGAGGGGGGA-
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81373056 15 + 145441459 -TGGGGGGGGGTGAAT
i mm10.chr7                 I 7 I 1
s canFam3.chr3               54433164 15 +  91889043 CAGAGGGAAGG-GAGT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1828280 16 +   3943991 CAGTGGGAAGGGCAGT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113294429 12 + 116334831 I

a score=1765249.000000
s hg38.chr15_KI270850v1_alt    361514 126 +    430880 CACTGGGCTGTTCCAGGTA--------CACCTCAAAGGACATGGCCCACAACCCACATGCCAGAGTGAGACCTGCCCTGACTAGGATA--ATCCCTG-TGCCCAGGTTCCCTCAT--CCCAACAAGATGGGTATTAGTC
s panTro5.chr15              63514921 126 +  83230942 CACTGGGCTGTTCCAGGTA--------CACCTCAAAGGACATGGCCCACAACCCACATGCCAGAGTGAGACCTGCCCTGACTAGGATA--ATCCCTG-TGCCCAGGTTCCCTCAT--CCCAACAAGATGGGTATTAGTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80472007 126 +  99763055 CACTGGGCTGTTCCAGGTA--------CACCTCAAAGGACATGGCCCACAACCCACATGCCAGAGTGAGACCTGCCCTGACTAGGATA--ATCCCTG-TGCCCAGGTTCCCTCAT--CCCAACAAGATGGGTATTAGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        72197 126 -   1709092 CACTGGGCTGTTCCAGGTA--------CACCTCAAAGGACATGGCCCACAACCCACATGCCAGTGTGAGACCTGCCCTGACTAGGATA--ATCCCTG-TGCCCAGGTTCCCTCAT--CCCAACAAGATGGGTATTAGTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17231660 124 - 121039945 CACTGGGCTGTTCCAGGTA--------CACCTCACAGGACATGGCCCACCACCCACATGCCAGAGTGAGACCTGCCCTGACTAGGATA--ATCCCTG-TGCCCAGGTTCCCTCAT--CCCA--CAGATGGGTATTAGTC
i nomLeu3.chr6              C 0 M 906
s rheMac8.chr7               60912254 126 + 169600520 CACTGGGCTGTTCCAGGTA--------CATCTTGTAGGACATGGCCCACAACCCACATGCCAGAGTGAGACCTGCCCTGACTAGGATA--ATCCCTG-TGCCAAGACTCCCTCAT--CCCAACAAGATGGGTATTTGTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108438996 126 - 171882078 CACTGGGCTGTTCCAGGTA--------CATCTTGTAGGACATGGCCCACAACCCACATGCCAGAGTGAGACCTGCCCTGACTAGGATA--ATCCCTG-TGCCAAGACTCCCTCAT--CCCAACAAGATGGGTATTAGTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        52367 126 -   2311642 CACTGGGCTGTTCCAGGTA--------CATCTTGTAGGACATGGCCCACAACCCACATGCCAGAGTGAGACCTGCCCTGACTAGGATA--ATCCCTG-TGCCAAGACTCCCTCAT--CCCAACAAGATGGGTATTAGTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        47937 126 -   1987038 CACTGGGCTGTTCCAGGTA--------CATCTTGTAGGACATGGCCCACAACCCACATGCCAGAGTGAGACCTGCCCTGACTAGGATA--ATCCCTG-TGCCAAGACTGCCTCAT--CCCAACAAGATGGGTATTAGTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21128217 126 -  24206276 CACTGGGCTGTTCCAGGTA--------CATCTTGTAGGACATGGCCCACAACCCACATGCCAGAGTGAGACCTGCCCTGACTAGGATA--ATCCCTG-TGCCAAGACTCCCTCAT--CCCAACAAGATGGGTATTAGTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        51032 126 -   1397330 CACTGGGCTGTTCCAGGTA--------CATCTTGTAGGACATGGCCCACAACCCACATGCCAGAGTGAGACCTGCCCTGACTAGGATA--ATCCCTG-TGCCAAGACTCCCTCAT--CCCAACAAGATGGGTATTAGTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        66812 126 -   1784207 CACTGGGCTGTTCCAGGTA--------CACCTTGTAGGACATGGCCCACGACCCACATGCCAGAGTGAGACCTGCCCTGACTAGGATA--ATCCCTG-TGCCGAGACTCCCTCAT--CCCAACAAGATGGGTATTAGTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22269518 125 + 158406734 CACTCGACTTTTCCAGGTA--------CACCTCATAGGACATGG-CCACAACCCATATGCCTGAGTGAAACCTGCCCTGACTAGGATA--ATCCCTG-TGCCCAGACTCCCTCAC--CCCAATAAGATGGGTATTAGTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50500599 125 +  54856640 CACTGGGCTTTTCCAGGTA--------CACCTCACAGGACATGG-CCACAACCCGTATGCCAGAGTGAGACCTGCCCTGATTAGGATA--ATCCCTG-TGCCCAGACTCCCTCAC--CCCAATAAGATGGGTATTAGTC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       643615 125 -   2910086 CACTGGGCTTTTCCAGGTA--------TACCTCACAGGACATGG-CCACAACCCGTATGCCAGAGCGAGACCTGCCCTGATTAGGATA--ATCCCTG-TGCCCAGACTCCCTCAC--CCCAATAAGATGGGTATTAGTC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40671212 125 +  42888418 CACTGGGCTTTTCCAGGTA--------CACCTCACAGGACATGG-CCATAACCCATATGCCAGAGTGAGACCTGCCCTGACTAGGATA--ATCCCTG-TGCCCAGACTCCCTCAC--CCCAATAAGATGGGTATTAGTC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113294441 121 + 116334831 CACTGGGATATTCCAGGTA--------TATCTCACAGGACATGGCCCACGACCCACATGCCTGAGTGAGACCTGCCCTGACTGGCATC--ATCCCTG------AGGCTCCCCCAC--CCCAAATGAATGGGCATTAGTC
i micMur3.chr9              I 12 C 0
s proCoq1.NW_012142813v1        39441 117 +     80520 CACTGGGCTATTCCAGGTA--------CATCTCACAGGACATGGCCCACGACCCACATGCC----GGAGACCTGCCCTGACTGGGATC--ATCCCTG------GGGCTCCCTCAC--CCCAACAGGATGGGCATTAGTC
i proCoq1.NW_012142813v1    I 2 C 0
s otoGar3.GL873530             656166  84 -  36342412 ----GAGCCATTCCTGGTC--------CATCACACAGAACACAGTCCACAGGTTAAAGG------TGAGACCTGCCCCA-------------CTCCA------GGGATCCCTCAC--CCCTA----------------C
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81373072 118 + 145441459 TATGAGGCTATTCTAGGTA--------CATCTCACAGGGCCTGGCCTACAACTTATATATCAG---GAGATATA----------GATAAGATCCATGTTACCCAGGCTCCCTTATACACCAACAGAATATATACTAGCC
i mm10.chr7                 I 1 C 0
s canFam3.chr3               54433179  95 +  91889043 CACTGGGCTGCTC-----------------------AGGTGTGTCCCATAACCCACATG-CGGCATAAGCTGTGCCCTGACCAGGACA--AT-TCTG---------------CAC--CCCAACAGGATGGGCACAAGTC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1828296 133 +   3943991 AGCCAGGCAGCTCTAGAAGCCCTGTGCCATCTTGTAGGACACGGCCCTCAACCCACATGCCAGAGTAAGACCTGCCCTGG-TAGGATA--ATCCCTA-TTCCTAAGCTCCCTCAC--TCCAACAGGATAGGCACTAGTC
i dasNov3.JH570731          C 0 C 0

a score=1311081.000000
s hg38.chr15_KI270850v1_alt    361640 107 +    430880 ATGAACAGATACAGC---GGCTCAGCTCCTCCCCTCCC-----TCCTGCAACTGTAGGCACAGACTGAGGAAACACTCTC-GAAGCAGCATCT----GACAAAC-----CAAGAG-AAACAGTCTC
s panTro5.chr15              63515047 107 +  83230942 ATGAACAGATATAGC---GGCTCAGCTCCTCCCCTCCC-----TCCTGCAACTGTAGGCACAGACTGAGGAAACACTCTC-AAAGCAGCATCT----GACAAAC-----CAAGAG-AAACAGTCTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80472133 107 +  99763055 ATGAACAGATATAGC---GGCTCAGCTCCTCCCCTCCC-----TCCTGCAACTGTAGGCACAGACTGAGGAAACACTCTC-AAAGCAGCATCT----GACAAAC-----CAAGAG-AAACAGTCTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        72323 107 -   1709092 ATGAACAGATATAGC---GGCTCAGCTCCTCCCCTCCC-----TCCTGCAACTGTAGGCACAGGCTGAGGAAACACTCTC-AAAGCAGCATCT----GACAAAC-----CAAGAG-AAACAGTCTC
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60912380 107 + 169600520 ATGAGCAGATACTGT---GGCCCAGCTCCTCCCCTCCC----CTCTTGCAACTGTAGGTACA-GCTGAAGAAACACTCTC-AAAGCAGCGTCT----GACAAAC-----CAAGAG-AAACAGTCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108439122 107 - 171882078 ATGAGCAGATACTGT---GGCCCAGCTCCTCCCCTCCC----CTCTTGCAACTGTAGGTACA-GCTGAAGAAACACTCTC-AAAGCAGCGTCT----GACAAAC-----CAAGAG-AAACAGTCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        52493 107 -   2311642 ATGAGCAGATACTGT---GGCCCAGCTCCTCCCCTCCC----CTCTTGCAACTGTAGGTACA-GCTGAAGAAACACTCTC-AAAGCAGCGTCT----GACAAAC-----CAAGAG-AAACAGTCTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        48063 107 -   1987038 ATGAGCAGATACTGT---GGCCCAGCTCCTCCCCTCCC----TTCTTGCAACTGTAGGTACA-GCTGAAGAAACACTCTC-AAAGCAGCGTCT----GACAAAC-----CAAGAG-AAACAGTCTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21128343 107 -  24206276 ATGAGCAGATACTGT---GGCCCAGCTCCTCCCCTCCC----CTCTTGCAACTGTAGGTACA-GCTGAGGAAACACTCTC-AAAGCAGCATCT----GACAAAC-----CAAGAG-AAACAGTCTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        51158 107 -   1397330 ATGAGCAGATACTGT---GGCCCAGCTCCTCCCCTCCC----TTCTTGCAACTGTAGGTACA-GCTGAAGAAACACTCTC-AAAGCAGCGTCT----GACAAAC-----CAAGAG-AAACAGTCTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        66938 108 -   1784207 ATGAGCAGATACTGT---GGCCCAGCTCCTCCCCTCCC----CTCTTGCAACTATAGGTACAGGCTGAGGAAACACTCTC-AAAGCAGCGTCT----GACAAAC-----CAAGAG-AAACAGTCTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22269643 119 + 158406734 ATAAGCAGATATAGT---GGCCCAGCTCCACTCCTCCCCACCCTCCTGCAACTGCAGGCACAGACTGAGGAAACACTCTCAAAAGCAGCATCT----GACAAACCAAAACAAGAGAAAACAGTCTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50500724 117 +  54856640 GTAAGCAGATATAGT---GGCCCAGCTCCACTCCTCCCTGCCCTCCTGCAACTGCAGGCACAGACTGAGGAAACACTCTC-AAAGCAGCATCT----GACAAACCAAAACAAGAG-AAACAGTCTC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       643740 117 -   2910086 ATAAGCAGATTTAGT---GGCCCAGCTCCACTCCTCCCTGCCCTCCTGCAACTGCAGGCACAGACTGAGGAAACACTCTC-AAAGCAGCATCT----GACAAACCAAAACAAGAG-AAACAGCCTC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40671337 117 +  42888418 ATAAGCAGATATAGT---GGCCCAGCTCCACTCCTCCCCTCCCTCCTGCAACTGCAGGCACAGACTGAGGAAACACTCTC-AAAGCAGCATCT----GACAAACCAAAACAAGAG-AAACAGTCTC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113294562 107 + 116334831 ATGAGCACATACATC---ACCCCAGCTCCCCACCTCCC-----TCCTGCAATCGCAGGCACACACTGAGAAAACACTCTC-AAAGCTGTGTCT----GACAGAC-----CACGAG-AAACAGTCTC
i micMur3.chr9              C 0 I 45
s proCoq1.NW_012142813v1        39558 107 +     80520 ATGCGCACATACATC---ATCCCAGCTCCCCACCTCCC-----TCCTGCAACTGCAGGCACAGACTGAGAAGGCACTCCC-AAAGCAGTGTCT----GACAGAG-----CACGAG-AAACAGTCTC
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             656250 109 -  36342412 ATGATCAGGTATGTC---ACCCTAGTTGCCTACCTCCC-----CCCTGCAATTTCAGG--CAGACCAAGAAGATATTCCC-AAAGCAGTGACTGATGGATGGAG-----CAAGCA-AAACAGTCTC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81373190 111 + 145441459 ACAGGTGGACACAA----AGCCCAGCTCTTCTTTTCCC-----CTTTGCAACTAAATCCACAGATGGCACAACTACTCCC-AAAGTAGTATCT----GACAAGCCACACTAAGAG-AAACAATCTC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54433274 108 +  91889043 AGGAGCACACACAGGTTAGGTCCAGCTC--CCCTTCCC-----TCCTGCACCCACAGGGACAGACTGGGGCCACACT----AA--CAGTTTCA----GAGACGTGGAAAGGAGAG-AAGCAGTCCC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1828429 113 +   3943991 AGGAGCAGACATATCA--GGTCTAGCTCCTCTTCTCTC-----TCTTGCAACTGCAGGTACAGACCAAACAAGCACTCTC-AAAACCATATCT----GACAGACCAAAATAAGAC-AAACCGTCTC
i dasNov3.JH570731          C 0 C 0
e nomLeu3.chr6               17231784 906 - 121039945 M

a score=338176.000000
s hg38.chr15_KI270850v1_alt    361747 46 +    430880 TGAAGTATCGTTACGCCCTATTAGAAACA-CCAAACTCTGAAACCTA
s panTro5.chr15              63515154 46 +  83230942 TGAAGTATCGTTACGCCCTATTAGAAACA-CCAAACTCTGAAACTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80472240 46 +  99763055 TGAAGTATCGTTACGCCCTATTAGAAACA-CCAAACTCTGAAACTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        72430 46 -   1709092 TGAAGTACCATTATGCCCTATTAGAAACA-CCAAACTCTGAAACTTA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60912487 40 + 169600520 TGAAGTACTGTTA------ATTAGAAACA-CCAAACTCTGAAACTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108439229 40 - 171882078 TGAAGTATTGTTA------ATTAGAAACA-TCAAACTCTGAAACTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        52600 40 -   2311642 TGAAGTATTGTTA------ATTAGAAACA-CCAAACTCTGAAACTTA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        48170 40 -   1987038 TGAAGTATTGTTA------ATTAGAAACA-CCAAACTCTGAAACTTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21128450 40 -  24206276 TGAAGTATTGTTA------ATTAGAAACA-CCAAACTCTGAAACTTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        51265 40 -   1397330 TGAAGTATTGTTA------ATTAGAAACA-CCAAACTCTGAAACTTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        67046 47 -   1784207 TGAAGTATTGTTATGCCCTATTAGAAACACCCAAACTCTGAAACTTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22269762 46 + 158406734 TAAAATATTGTTATGACCTATTAGAAACA-CCAAACTCTGAAGCTTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50500841 46 +  54856640 TAAAATATTGTTATGCCCTATTAGAAACA-CCAAACTCTGAAGCTTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       643857 46 -   2910086 TAAAATATTGTTTTGCCCTATTAGAAACA-CCAAACTCTGAAGCTTA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40671454 46 +  42888418 TAAAATATTGTTATGCCCTATTAGAAACA-CCAAACTCTGAAGCTTA
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        39665 46 +     80520 GGAAGTACTATCATGCCCTATAAGGGGCA-CCATGCTAAGGAACTTA
i proCoq1.NW_012142813v1    C 0 I 1
s otoGar3.GL873530             656359 41 -  36342412 AGAAGTAC-----TGCAAGATGAGGGGCA-CTGCGCTCAGAAACTCA
i otoGar3.GL873530          C 0 I 1
s mm10.chr7                  81373301  4 + 145441459 --------------------------TCA-C----------------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54433382 32 +  91889043 ---AGCATT-----------CTGGGTGTC-CAGTGTTCAGGGGCTCC
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1828542 44 +   3943991 AGAAGAACTGTTATGCTTTATCAACAACA-GTGA--TCAGGAGCTCA
i dasNov3.JH570731          C 0 I 1
e micMur3.chr9              113294669 45 + 116334831 I
e nomLeu3.chr6               17231784 906 - 121039945 M

a score=658550.000000
s hg38.chr15_KI270850v1_alt    361793 48 +    430880 ATCACCTAGCTCTGTCAATATTGCTTCTCTTGC------CCTTCCAGGAGCCCT
s panTro5.chr15              63515200 48 +  83230942 ATCACCTAGCTCTGTCAATATTGCTTCTCTTGC------CCTTCCAGGAGCCCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80472286 48 +  99763055 ATCACCTAGCTCTGTCAATATTGCTTCTCTTGC------CCTTCCAGGAGCCCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        72476 48 -   1709092 ATCACCTAGCTCTGTCAATATTGCTTCTCTTGC------CCTTCCAGGAGCCCT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60912527 48 + 169600520 GTCACCTAGCTCTGTCAATATTGCTTCTCTTGC------CCTTCCAGGAGCCCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108439269 48 - 171882078 GTCACCTAGCTCTGTCAATATTGCTTCTCTTGC------CCTTCCAGGAGCCCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        52640 48 -   2311642 GTCACCTAGCTCTGTCAATATTGCTTCTCTTGC------CCTTCCAGGAGCCCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        48210 48 -   1987038 GTCACCTAGCTCTGTCAATATTGCTTCTCTTGC------CCTTCCAGGAGACCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21128490 48 -  24206276 GTCACCTAGCTCTGTCAATATTGCTTCTCTTGC------CCTTCCAGGAGCCCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        51305 48 -   1397330 GTCACCTAGCTCTGTCAATATTGCTTCTCTTGC------CCTTCCAGGAGACCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        67093 48 -   1784207 GTCACCTAGCTCTGTCAATATTGCTTCTCTTGC------CCTTCCAGGAGCCCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22269808 48 + 158406734 ATCACCCAGCTTTGTCAATATTGCTTCTCTTGC------CTTTCTAAGAGCCCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50500887 48 +  54856640 ATCACCCAGCTCTGTCAATATTGCTTCTCTTGT------CCTTTTAAGAGCCCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       643903 48 -   2910086 ATCACCCAGCTCTGTCAATATTGCTTCTTTTGC------CATTCTAAGAACCCT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40671500 48 +  42888418 ATCACCCAGCTCTGTCAATATTGCTTCTCTTGC------CCTTCTAAGAGCCCT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113294714 48 + 116334831 ATCACCCAGCTCTGTCAGTGCTGTTTCTCTTGC------CCTTCCAGGAGTCCT
i micMur3.chr9              I 45 I 70
s proCoq1.NW_012142813v1        39712 48 +     80520 AACACCCAGCTCTGTCAATACTGTTTCTCTTGC------CCTTCCAGGAGTCCT
i proCoq1.NW_012142813v1    I 1 C 0
s otoGar3.GL873530             656401 45 -  36342412 GTCATCCA---CTGCCAGTACCATTTTCCTTAC------CCTTTCAGGAGCCCT
i otoGar3.GL873530          I 1 I 2
s mm10.chr7                  81373305 52 + 145441459 ATCATCTGG--CTGTCAGTACTGTTTCCCTTGCATTTGTCTTTCCAGGATCCCT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54433415 44 +  91889043 ACTACCCAGCCCTGCTGACAC--CCTTCCCTGA------CCTTCT--GAGCATT
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1828587 44 +   3943991 GTCACCTGCTTCTGCCAATACT--CTCTCTTGA-------ATTCTAGGAGGCC-
i dasNov3.JH570731          I 1 C 0
e nomLeu3.chr6               17231784 906 - 121039945 M

a score=902908.000000
s hg38.chr15_KI270850v1_alt    361841 87 +    430880 GAGCATGATACAGGGC-AGC-CGTGAGGG-CCACTGATGCCTCTAACATCCAGGCCCTCTCTCAGAGGTGCTGCACAAGACCAATGC-TTA
s panTro5.chr15              63515248 88 +  83230942 GAGCATGATACAGGGC-AGC-CGTGAGGG-CCACTGATGCCTCTAACACCCAGGCCCTCTCTCAGAGGTGCTGCACAAGACCAATGCTTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80472334 88 +  99763055 GAGCATGATACAGGGC-AGC-CGTGAGGG-CCACTGATGCCTCTAACACCCAGGCCCTCTCTCAGAGGTGCTGCACAAGACCAATGCTTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        72524 88 -   1709092 GAGCATGATACAGGGC-AGC-CGTGAGGG-CCACTGATGCCTCTAACACCCAGGCCCTCTCTCAGAGGTGCTGCACGAGACCAATGCTTTA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60912575 88 + 169600520 GAGAATGATACAGGGC-AGC-TGTGAGGG-CCACTGATGCCTCCAATGCCCAGGCCCTCTCTCAGAGGTGTTGCACAAGACCAATGCTTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108439317 88 - 171882078 GAGAATGATACAGGGC-AGC-TGTGAGGG-CCACTGATGCCTCCAATGCCCAGGCCCTCTCTCAGAGGTGTTGCACAAGACCAATGCTTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        52688 88 -   2311642 GAGAATGATACAGGGC-AGC-TGTGAGGG-CCACTGATGCCTCCAATGCCCAGGCCCTCTCTCAGAGGTGTTGCACAAGACCAATGCTTTA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        48258 88 -   1987038 GAGAATGATACAGGGC-AGC-TGTGAGGG-CCACTGATGCCTCCAATGCCCAAGCCCTCTCTCAGAGGTGTTGCACAAGACCAATGCTTTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21128538 88 -  24206276 GAGAATGATACAGGGC-AGC-TGTGAGGG-CCACTGATGCCTCCAATGCCCAGGCCCTCTCTCAGAGGTGTTGCACAAGACCAATGCTTTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        51353 88 -   1397330 GAGAATGATACAGGGC-AGC-TGTGAGGG-CCACTGATGCCTCCAATGCCCAGGCCCTCTCTCAGAGGTGTTGCACAAGACCAATGCTTTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        67141 88 -   1784207 GAGAATGATACAGGGC-AGC-TGTGAGGG-CCACTGATGCCTCCAATGCCCAGGCCCTCTCTCAGAGGTGCTGCACAAGACCAATGCTTTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22269856 87 + 158406734 GAGCACAATATTGGGC-AGC-TGTGA-GG-CCACTGATGCCTCTAATGCCCAGGCCCTCTCTCAGAAGTGCTGCACAAGACCAGTGCTTTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50500935 87 +  54856640 GAGCACAATATTGGGC-AGC-AGTGA-GG-CCACTGATGCCTCTAATGCCCAGGCCCTCTCTCAGAGGTGCTGCACAAGACCAGTGCTTTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       643951 87 -   2910086 GAGCACAATATTGGGC-AGC-CGTGA-GG-CCACTGATGCCTCTAATGCCCAGGCCCTCTCTCAGAGGTGCTGCATAAGACCAGTGCTTTA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40671548 87 +  42888418 GAGCACGATATTGGGC-AGC-CATGA-GG-CCACTGATGCCTCTAATGCTCAGGCCCTCTCTCAGAGGTGCTGCATAAGACCAGTGCTTTA
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        39760 71 +     80520 CAGGGTGAT-ACTGGC-CAC-TGCGAGGG-CCACTGATGTCTTTAATTGCCTGGCC---------------TGCCCAAGACCAA-GCACTA
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             656448 71 -  36342412 AAGGATGACAACTGGC-AGC-TGTGAGGG-TCACTGATGCCTTTAATAGCCTGGGC---------------TGCCCAGGACAGA-GCACT-
i otoGar3.GL873530          I 2 C 0
s mm10.chr7                  81373357 85 + 145441459 CAGAGCGATGGTTGGCAAGC-TGGGACTA-CCACTGACACCTTTAACTCCTAGGCTTTCT-TCTGAGATACTGCCTAGGAAGAA---CCTA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54433459 71 +  91889043 CAGAGCTACACTGGCC-AGC-TGGGAGGC-TCACTGATGTCTC----ACTCAGG-------------GTGCTGCCCAGGGCTAAGGCCCTG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1828631 80 +   3943991 ---CGCAATACCTGCC-AACTTGTGGGGGACCACTGATGCCTTTAGCTGCC-------TTCTCAGGGGTGCTGCCCAGGACCAAGGTCCTA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113294762 70 + 116334831 I
e nomLeu3.chr6               17231784 906 - 121039945 M

a score=3769343.000000
s hg38.chr15_KI270850v1_alt    361928 290 +    430880 TTTCTGTGGCCACTCACAGCTCCAGCAACAAAGACTAAGAAAAT-TC--AGCT---TCTGGAGCTTCCGCCA-TTTCCTCTTTGC---CA---TCTCCT----CCCACATCGGTCCTTTTCCAACATGAGCCCAGGGTCACTG---GGCTTCTTCCTCAT-AAAGGAGGGTAGGGCAACAGGCCCAGACTCACCAGGCAGGCTGCTCAAACCT-GGAC----TCAGCTGGTAGCACTCCA-CCT-GCTTGTT--CTCCCC-TGTTGCAAGGAGAAGCAAGCAGAT-ACGGGAAGCATGCCCACCTGGGACCTCCCATGGCAG
s panTro5.chr15              63515336 290 +  83230942 TTTCTGTGGCCACTCACAGCTCCAGCAACAAAGACTAAGAAAAT-TC--AGCT---TCTGGAGCTTCCGCCA-TTTCCTCTTTGC---CA---TCTCCT----CCCACATCGGTCCTTTTCCAACATGAGCCCAGGGTCACTG---GGCTTCTTCCTCAT-AAAGGAGGGTAGGGCAACAGGCCCAGACTCACCAGGCAGGCTGCTCAAACCT-GGAC----TCAGCTGGTAGCACTCCA-CCT-GCTTGTT--CTCCCC-TGTTGCAAGGAGAAGCAAGCAGAT-ACGGGAAGCATGCCCACCTGGGACCTCCCATGGCAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80472422 290 +  99763055 TTTCTGTGGCCACTCACAGCTCCAGCAACAAAGACTAAGAAAAT-TC--AGCT---TCTGGAGCTTCCGCCA-TTTCCTCTTTGC---CA---TCTCCT----CCCACATCGGTCCTTTTCCAACATGAGCCCAGGGTCACTG---GGCTTCTTCCTCAT-AAAGGAGGGTAGGGCAACAGGCCCAGACTCACCAGGCAGGCTGCTCAAACCT-GGAC----TCAGCTGGTAGCACTCCA-CCT-GCTTGTT--CTCCCC-TGTTGCAAGGAGAAGCAAGCAGAT-ACGGGAAGCATGCCCACCTGGGACCTCCCATGGCAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        72612 290 -   1709092 TTTCTGTGGCCACTCACAGCTCCAGCAACAAAGACTAAGAAAAT-TC--AGCT---TCCGGAGCTTCCGCCA-TTTCCTCTTTGC---CA---TCTCCT----CCCACAGCGGTCTTTTTCCAACATGAGCCCAGGGTCACTG---GGCTTCTTCCTCAT-AAAGGAGAGTAGGGCAACAGGCCCAGACTCACCAGGCAGGCTGCTCAAACCT-GGAC----TCAGCTGGTAGCACTCCA-CCT-GCTTGTT--CTCCCC-TGTTGCAAGGAGAAGCAAGCAGAT-ACGGGAAGCATGCCCACCTGGGACCTCCCATGGCAG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60912663 290 + 169600520 GTTCTGTGGCCACTCACAGCTCCAGCAACAAAGTCTAAGAATAT-TC--AGCT---TCTGGAGCTTCCGCCA-TTTCCCCTTTGC---CA---TCTCCT----CCCACATCGGTCCTTTTCCAACATGTGCCCTGGGTCACTG---GGCTTCTTCTTCAT-AAAGGAGGATAGGGCAACAGGCCCAGACTCACCAGGCAGGCTGCTCACACCT-GGAC----TCAGCTGGTAGCACTCCA-CCT-GCTTGTT--CTCTGC-TGTTGCAAGGAGAAGCAAGCAGAT-ACAGGAAGCATGCCCACCTGAGACCTCCCATGGCAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108439405 290 - 171882078 GTTCTGTGGCCACTCACAGCTCCAGCAACAAAGTCTAAGAATAT-TC--AGCT---TCTGGAGCTTCCGCCA-TTTCCCCTTTGC---CA---TCTCCT----CCCACATCGGTCCTTTTCCAACATGTGCCCTGGGTCACTG---GGCTTCTTCTTCAT-AAAGGAGGATAGGGCAACAGGCCCAGACTCACCAGGCAGGCTGCTCACACCT-GGAC----TCAGCTGGTAGCACTCCA-CCT-GCTTGTT--CTCTGC-TGTTGCAAGGAGAAGCAAGCAGAT-ACAGGAAGCATGCCCACCTGAGACCTCCCATGGCAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        52776 290 -   2311642 GTTCTGTGGCCACTCACAGCTCCAGCAACAAAGTCTAAGAATAT-TC--AGCT---TCTGGAGCTTCCGCCA-TTTCCCCTTTGC---CA---TCTCCT----CCCACATCGGTCCTTTTCCAACATGTGCCCTGGGTCACTG---GGCTGCTTCTTCAT-AAAGGAGGATAGGGCGACAGGCCCAGACTCACCAGGCAGGCTGCTCACACCT-GGAC----TCAGCTGGTAGCACTCCA-CCT-GCTTGTT--CTCTGC-TGTTGCAAGGAGAAGCAAGCAGAT-ACAGGAAGCATGCCCACCTGAGACCTCCCATGGCAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        48346 290 -   1987038 GTTCTGTGGCCACTCACAGCTCCAGCAACAAAGTCTAAGAATAT-TC--AGCT---TCTGGAGCTTCCGCCA-TTTCCCCTTTGC---CA---TCTCCT----CCCACATCGGTCCTTTTCCAACATGTGCCCTGGGTCACTG---GGCTTCTTCTTCAT-AAAGGAGGATAGGGCAACAGGCCCAGACTCACCAGGCAGGCTGCTCACACCT-GGAC----TCAGCTGGTAGCACTCCA-CCT-GCTTGTT--CTCTGC-TGTTGCAAGGAGAAGCAAGCAGAT-ACAGGAAGCATGCCCACCTGAGACCTCCCATGGCAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21128626 290 -  24206276 GTTCTGTGGCCACTCACAGCTCCAGCAACAAAGTCTAAGAATAT-TC--AGCT---TCTGGAGCTTCTGCCA-TTTCCCCTTTGC---CA---TCTCCT----CCCACATTGGTCCTTTTCTAACATGTGCCCTGGGTCACTG---GGCTTATTCTTCAT-AAAGGAGGATAGGGCAACAGGCCCAGACTCACCAGGCAGGCTGCTCACACCT-GGAC----TCAGCTGGTAGCACTCCA-CCT-GCTTGTT--CTCTGC-TGTTGCAAGGAGAAGCAAGCAGAT-ACAGGAAGCATGCCCACCTGGGACCTCCCATGGCAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        51441 290 -   1397330 GTTCTGTGGCCACTCACAGCTCCAGCAACAAAGTCTAAGAATAT-TC--AGCT---TCTGGAGCTTCCACCA-TTTCCCCTTTGC---CA---TCTCCT----CCCACATCGGTCCTTTTCCAACATGTGCCCTGGGTCACTG---GGCTTCTTCTTCAT-AAAGGAGAATAGGGCAACAGGCCCAGACTCACCAGGCAGGCTGCTCACACCT-GGAC----TCAGCTGGTAGCACTCCA-CCT-GCTTGTT--CTCTGC-TGTTGCAAGGAGAAGCAAGCAGAT-ACAGGAAGCATGCCCACCTGAGACCTCCCATGGCAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        67229 290 -   1784207 TTTCTGTGGCCACTCACAGCTCTAGCAACAAAGTCTAAGAATAT-TC--AGCT---TCTGGAGCTTCCACCA-TTTCCCCTTTGC---CA---TCTCCT----CCCACATCGGTCCTTTTCCAACACGAGCCCTGGGTCACTG---GGCTTCTTCCTCAT-AAAGGAGGGTAGGGCAACAGGCCCAGACTCACCAGGCAGGCTGCTCACACCT-GGAC----TCAGCTGGTAGCACTCCA-CCT-GCTTGTT--CTCTGC-TGTTGCAAGGAGAAGCAAGCAGAT-ACAGGAAGCATGCCCACCTGGGACCTCCCATGGCAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22269943 293 + 158406734 TTTTTGTGGCCACTCACAGCCCCAGCAACAAAGTCTAAGAAAGT-TC--AGCT---TCTGGAGCATCCACCA-TTTCCTCTTTGC---CG---TGTCCT----TCCACATCAGTCCTTTGCCAACATGAGGCCTGGGTCACTGTGCTGCTTCCTCCTCAC-AAAGGAGGGTAGGGCAACAGGCCCAGATTCAGTAGACAGGCTGCTCGCACCT-GGAT----TCAGCTGGTAGCACTCCA-TCT-GCTTGTC--CTCCCC-CGTTGCAAGGAGAAGCAAGCAGAT-ACAGGAAGCATTCCCACCTGGGACCTCCCATGGCAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50501022 291 +  54856640 TTTTTGTGGCCACTCACAGCCCCAGCAACAAAGTCTAAGAAAGT-TC--AGCT---TCTGGAGCGTCCACCA-TTTCCTCTTTGC---CG---TGTCCT----TCCACATCAGTCCTTTTCCACCATGAGCCCCGGGTCACTG---TGCTTCTTCCTCAC-ACAGGAGGGTAGGGCAACAGGCCCAGATTCAGTAGACAGGCTTCTCACACCTGGGAC----TCAGCTGGTAGCACTCCA-CCT-GCTTGTT--CTTCCC-TGTTGCAAGGAGAAGCAAACAGAT-ACAGGAAGCATTTCCACCTGGGACCTCCCATGACAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       644038 290 -   2910086 TTTTTGTGGCCACTCACAGCCCCAGCAACAAAGTCTAAGAAAGT-TC--AGCT---TCTGGAGCTTCCGCTA-TTTCCTCTTTGC---CG---TGTCCT----TCCACATCAGTCCTTTTCCAACATGAGCCCTGGGTCACCG---TGCTTCTTCCTCAC-AAAGGAGGGTAGGGCAACAGGCCCAGATTCAGCAGACAGGCTGCTCACACCT-GGAC----TCAGCTGGTAACACTCCA-CCT-GCTTGTT--CTCCCC-TGTTGCAAGGAGAAGCAAGCAGAT-ACAGGAAGCATTTCCACCTGGGACCTCCCATGGCAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40671635 290 +  42888418 TTTTTGTGTCCACTCACAGCCCCAGCAACAAAGTCTAAGAAAGT-TC--GGCT---TTTGGAGCTTCCACCA-TTACCTCTTTGC---CA---TGTCCT----TCCACATCAGTCCTTTCCCAACATGAGCCCTGGGTCACTG---TGCTTCTTCCTCAC-AAAGGAGGGTAGGGCAACAGGCCCAGATTCAGTAGACAGGCTGCTCACACCC-GGAC----TCAGCTGGTAGCACTCCA-CCT-GCTTGTT--CTCCCC-TGTTGCAAGGAGAAGCAAGCAGAT-ACAGGAAGCATTTCCACGTGGGACCTCCCATGGCAG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113294832 290 + 116334831 TTTCTGTGACCACTCACAGGCCCAGCAACAAAGTCTAAGCAAGG-AC--AGCT---TCTGGAGCGCCTGTCATTTTCTTCTTTGC---CA---ATATCTCCCACCCACATCAGACCGTTTCCAACAGGACCCCT-GGTCACTG---GGCTTCTTCCTCAT----AGAGGGTAGGGCAAAGGGCCCGGACTAAGTAGTCAGGCTACTCACACCT-GGAC----CAGGCTGGTCGCACTCCG-CCT-GC-TCAT--CCTCCC-TGTTACAAGGAGAAGGAAGCAGAT-CCTGGAAACATGCGCATCTGGGACCTCCCATGGCAG
i micMur3.chr9              I 70 I 99
s proCoq1.NW_012142813v1        39831 294 +     80520 TTTCTGTGACCACTCACAGGTCCAGCAACAAAGTCTAAGAAAAGTCC--AGCT---TCTGGAGCCCCTGTCA-TTTCTTCTTTGC---CG---ACATCTCCCACCCACATCAGATCTTTTCCAACAGTACCCCT-GGTCACTG---GGCTTCTTCCTCAT-AAAAGAGGGTAGGGCAAGTGGCCCAGCCTTGGCAGGCAGGCTACTCACACCT-GGAC----CAAGCTGTTAGCACTCCA-CCT-GCTTCTT--CTCCCC-TGGTGCAAGGAGAAACAAGCAGAT-ACTGGAAACATGCACACCTGGGACCTCCCATGGCAG
i proCoq1.NW_012142813v1    C 0 I 20
s otoGar3.GL873530             656519 264 -  36342412 GTTCTCTGAATACTCAC--GTCCTGTAACAAAGT-----------TC--AGCT---TCTGGAGCCCCTGTCA-TTTCCTTTTTGC---CA---TTGTCT----CCCACATCAGTCCTTTTCCAACATGACCCCT-GGTCACCG---GGTTTCTTCCTCAT-AAAAGGAGGGAAGG--------CCAGCCTTAGCAAGCAGGCTGCTCACACCC-AGAC----C-GGCTGGTCACGCTCCA-CCT-AT-GTGT--TCTCCC-TGTTGCA---AGAAGCAAGAAGGT-ACTGGAAACACGCTCACCTGGGACCTCCCATGGCAG
i otoGar3.GL873530          C 0 I 19
s mm10.chr7                  81373442 236 + 145441459 TTTCAGTGACCCCACCCC-CGCCAGCTACGA----TGACAAAAT-TC--AACT---TCTTGAGCTTCTGTCA-TTTCCTTTTTACGAGTA---TCTCCT----TCCATAGAAATCTTTCCCCAA-----------------TG-------------TCTT-AAGGG-----------------CCAAAAT------------TGCTTATGCCT-CTACGAGGCTGGCTGGCAGTATTCCA-TTT-GCCTGTTCACACCCT-TGTTGCAAGGAAAAGCAAGCAGGTAATCGGAATCATGCCCACCTGGGACTG---ATGGTAC
i mm10.chr7                 C 0 I 12
s canFam3.chr3               54433530 292 +  91889043 CTTCTGTG-CCACTCACAGCTCCGGCCACAAAGTCCAGCTCTGC-CCAGAGAT---TCCAGAACCTCCGCCA-TTTGCTCTTTGC---CAATGTGCTCG----CCTATATCAGTCCCTTTCCATCATGACCTGT-AGTCACAA---GGCTTCCCCACCAAAAAAAGAGGGTAGAGCAAAAATCCCAGCCTCAGCAGACAGGCCGCTGGCACCC-AGAC----CAGGCTGGTAGCACCTCG-CCTCGAGTCTC--CTCCCA-TGCTACACA-AGTAGTAACCAGAT-ACAGGCAGCAGGCCCACCTGGGACCATCC--GACAG
i canFam3.chr3              C 0 I 14
s dasNov3.JH570731            1828711 254 +   3943991 TTTCTGTGGCCACTCTTAGCTCCAGCAACAAAGCCAAAGAAAGT-CC--AGCTCTGCCCAGGGCTTCTGAAG------CCTCTAC---C----TCTTCT----CCAATGT---ACATTTTCTTATGTAACCCCC-AGTCACTG---GGCTTCCTCCCCAG-AAAGGGGGATGGGGCAAAAGTCCCTGCCTCAGCAGGCAGGCTCCTCACACCT-GAAT----TCGACTAGTCATGTGCCACCCT-GCTTGCT--CCCTCCTTGTTGCAAGGAGAAGGAACCAGAT-ACAGG-------------------------------
i dasNov3.JH570731          C 0 C 0
e nomLeu3.chr6               17231784 906 - 121039945 M

a score=832853.000000
s hg38.chr15_KI270850v1_alt    362218 81 +    430880 GGTCGAGAGA--ATAATGCT----------GCCACAGAAATAGCT-GTTCAGAACTTCCTGCA--GTACACCC-TGTGTCCACA-GGC------ACTCAGGCAT
s panTro5.chr15              63515626 81 +  83230942 GGTCGAGAGA--ATAATGCT----------GCCACAGAAATAGCT-GTTCAGAACTTCCTGCA--GTACACCC-TGTGTCCACA-GGC------ACTCAGGCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80472712 81 +  99763055 GGTCGAGAGA--ATAATGCT----------GCCACAGAAATAGCT-GTTCAGAACTTCCTGCA--GTACACCC-TGTGTCCACA-GGC------ACTCAGGCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        72902 81 -   1709092 GGTCGAGAGA--ATAATGCT----------GCCACAGAAATAGCT-GTTCAGAACTTCCTGCA--GTACGCCC-TGTGTCCACA-GGC------ACTCAGGCAT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60912953 82 + 169600520 GGTCAAGAAA--ATGCTGCT----------GCCATAGGAATAGCTGGTTCAGAACTTCCTGCA--GTACACCC-TGTGTCCACA-GGC------ACTCAGGCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108439695 82 - 171882078 GGTCGAGAAA--ATGCTGCT----------GCCATAGGAATAGCTGGTTCAGAACTTCCTGCA--GTACACCC-TGTGTCCACA-GGC------ACTCAGGCAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53066 81 -   2311642 GGTCGAGAAA--ATGCTGCT----------GCCATAGGAATAGCT-GTTCAGAACTTCCTGCA--GTACACCC-TGTGTCCACA-GGC------ACTCAGGCAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        48636 81 -   1987038 GGTCGAGAAA--ATGCTGCT----------GCCATAGGAATAGCT-GTTCAGAACTTCCTGCA--GTACACCC-TGTGTCCACA-GGC------ACTCAGGCAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21128916 81 -  24206276 GGTCGAGAAA--ATAATGCT----------GCCATAGGAATAGCT-GTTCAGAACTTCCTGCA--GTACACCC-TGTGTCCACA-GGC------ACTCAGGCAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        51731 81 -   1397330 GGTCGAGAAA--ATGCTGCT----------GCCATAGGAATAGCT-GTTCAGAACTTCCTGCA--GTACACCC-TGTGTCCACA-GGC------ACTCAGGCAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        67519 81 -   1784207 GGTCGAGAAA--ATAATGCT----------GCCATAGGAATAGCT-GTTCAGAACTTCCTGCA--GTACACCC-TGTGTCCACA-GGC------ACTCAGGCAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22270236 80 + 158406734 GGTCAAGA-G--ATACTGCT----------GCCATAGGAATAGCT-GTTCAGAGCTTCCTGTA--GTACACCC-TGTGTCCACA-GGC------ACTGAGGCAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50501313 81 +  54856640 GGTCAAGAGG--ATACTGCT----------GCCATAGGAATAGCT-GTTCAGAGCTTCCTGTA--GTACACCC-TGTGTCCATA-GGC------ACTCAGGTAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       644328 81 -   2910086 GGTCAAGAGG--ATACTGCT----------GCCATAGGAATAGCT-GTTCAGAGCTTCCTGCA--GTACACTC-TGTGTCCATA-GGC------ACTCAGGCAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40671925 87 +  42888418 GGTCAAGAGG--ATACTGCT----------GCCATAGGAATAGCT-GTTCAGAGCTTCCTGCA--GTACACCC-TGTGTCCATA-GGCACTCAGACTCAGGCAT
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        40145 80 +     80520 GAGAGAGAGA--ATGCTGTTC---------CTCACAGGAATAGCT-GGCCAGAGCCTTCTGCA--GTATACCA-TGTGTCCAAA-GGC--------ACAAGCAT
i proCoq1.NW_012142813v1    I 20 C 0
s otoGar3.GL873530             656802 81 -  36342412 GAGGAGAATG--ATGCTATTT---------GTCACAAGAATAACT-GGCCAGAGCCTCCTATT--ATACAATG-TGTGTCCAAATTGC--------TCAGGCAT
i otoGar3.GL873530          I 19 C 0
s mm10.chr7                  81373690 85 + 145441459 AGTTAAGACA--GTGGGGTTTGTGCTGTTAGCCTGAGGAATGTCT-GGTCACAGCTTTCTGCA--GCACATTC-TG------AA-CAC------ACTCAAGCAA
i mm10.chr7                 I 12 I 2
s canFam3.chr3               54433836 87 +  91889043 GGTGCAGGGATTATGCTGTTA---------GCCACAGGAGAAGCC-AGACAGAGCCACCTGCACTGTCTACCCTTACGTCCTTA-GGC------ACTCAGGCAG
i canFam3.chr3              I 14 C 0
s dasNov3.JH570731            1828965 29 +   3943991 -------------------------------------------------------------------GTACCC-TATGTCCATA-GGC------ACTGAGGCAT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113295122 99 + 116334831 I
e nomLeu3.chr6               17231784 906 - 121039945 M

a score=549521.000000
s hg38.chr15_KI270850v1_alt    362299 39 +    430880 AGCCTAGAAGGGAAAATT------ATCAGT---------------CTCCTTCCTTTGGAG
s panTro5.chr15              63515707 39 +  83230942 AGCCTAGAAGGGAAAATT------ATCAGT---------------CTCCTTCCTTTGGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80472793 39 +  99763055 AGCCTAGAAGGGAAAATT------ATCAGT---------------CTCCTTCCTTTGGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        72983 39 -   1709092 AGCCTAGAAGGGAAAATT------ATCAGT---------------CTCCTTCCTTTGGAG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60913035 39 + 169600520 AGCCTAGAAGGGAAAATT------GTCAGT---------------CTCCTTCCTTTGGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108439777 39 - 171882078 AGCCTAGAAGGGAAAATT------GTCAGT---------------CTCCTTCCTTTGGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53147 39 -   2311642 AGCCTAGAAGGGAAAATT------GTCAGT---------------CTCTTTCCTTTGGAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        48717 39 -   1987038 AGCCTAGAAGGGAAAATT------ATCAGT---------------CTCCTTCCTTTGGAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21128997 39 -  24206276 AGCCTAGAAGGGAAAATT------ATCAGT---------------CTCCTTCCTTTGGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        51812 39 -   1397330 AGCCTAGAAGGGAAAATT------ATCAGT---------------CTCCTTCCTTTGGAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        67600 39 -   1784207 AGCCTAGAAGGGAAAATT------ATCAGT---------------CTCCTTCCTTTGGAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22270316 39 + 158406734 AGCCTAGAGGGGGAAATT------ATCAGT---------------CTCCTTCCATTGGAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50501394 39 +  54856640 AGCCTAGAGGGGGAAATT------ATCAGT---------------CTCCTTCCATTGGAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       644409 39 -   2910086 AGCCTAGAGGGGGAAATT------ATCAGT---------------CTCCTTCCATTGGAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672012 39 +  42888418 AGCCTAGAGGGGGAAATT------ATCAGT---------------CTCCTTCCATTGGAG
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113295221 39 + 116334831 AGCCTAGAGGGGAAAATG------GTCAGT---------------CTCCTTCCTTTGGAG
i micMur3.chr9              I 99 I 18
s proCoq1.NW_012142813v1        40225 39 +     80520 AGCCTAGAGGGGAAAATG------GTCAGT---------------CTCCTTCCTTTGGAG
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             656883 45 -  36342412 AGACTTGGGGGGCGGGGGGGTGATGGCAGT---------------GTCCTTCCTTTGGAG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81373777 56 + 145441459 ACCCTGGGAGGGGGGTGTGA----ATCAGTCTGGGGGAGGGGGGACTCCTTCCTTTAGAG
i mm10.chr7                 I 2 C 0
s canFam3.chr3               54433923 52 +  91889043 AGCAGAGAGGGGAAAAGTG-----ACCAGTCCATAGCAGGGA---CTCCTCCCCTTGGAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1828994 52 +   3943991 AGCCCAGAGGAGAAAATG------GTCAGTGTGTGGTAGGGAC--TCCCTCCCTTCGGAG
i dasNov3.JH570731          C 0 C 0
e nomLeu3.chr6               17231784 906 - 121039945 M

a score=-5931.000000
s hg38.chr15_KI270850v1_alt    362338 18 +    430880 AT---------------------------------------------------TTTTTTTTTTTTTTA-A-
s panTro5.chr15              63515746 15 +  83230942 A------------------------------------------------------TTTTTTTTTTTTA-A-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80472832 16 +  99763055 A-----------------------------------------------------TTTTTTTTTTTTTA-A-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73022 13 -   1709092 A--------------------------------------------------------TTTTTTTTTTA-A-
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60913074 14 + 169600520 A-------------------------------------------------------TTTCTTTTTTTA-A-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108439816 14 - 171882078 A-------------------------------------------------------TTTCTTTTTTTA-A-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53186 14 -   2311642 A-------------------------------------------------------TTTCTTTTTTTA-A-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        48756 14 -   1987038 A-------------------------------------------------------TTTCTTTTTTTA-A-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21129036 14 -  24206276 A-------------------------------------------------------TTTCTTTTTTTA-A-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        51851 14 -   1397330 A-------------------------------------------------------TTTCTTTTTTTA-A-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        67639 14 -   1784207 A-------------------------------------------------------TTTCTTTTTTTA-A-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22270355 15 + 158406734 A-------------------------------------------------------TTTTTTTTTTTTAA-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50501433 14 +  54856640 A-------------------------------------------------------TTTTTTTTTTTT-A-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       644448 13 -   2910086 A-------------------------------------------------------TATTTTTTTTA--A-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672051 13 +  42888418 T-------------------------------------------------------TTTTTTTTTTA--A-
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        40264 10 +     80520 ----------------------------------------------------------TGTTTTTTGG---
i proCoq1.NW_012142813v1    C 0 I 8
s otoGar3.GL873530             656928 10 -  36342412 ----------------------------------------------------------GACCATTTGG---
i otoGar3.GL873530          C 0 I 8
s mm10.chr7                  81373833 18 + 145441459 -GA--------------------------------------------------TTTTTTTTTTTTTTA-A-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54433975 67 +  91889043 --GTGttttttttccatgtttttctttctttctttctctctctttttttttttttttttttttttttA-G-
i canFam3.chr3              C 0 I 2
s dasNov3.JH570731            1829046 11 +   3943991 -----------------------------------------------------------GCTTTTTTA-GG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113295260 18 + 116334831 I
e nomLeu3.chr6               17231784 906 - 121039945 M

a score=2597591.000000
s hg38.chr15_KI270850v1_alt    362356 195 +    430880 AGCTTTGCTGCTGTGTCATCCATCCACGTTATTCCTC-CTGGCTGTAGATATTCTGCTTGCTCCCTA-TCTGTGTT--TGTCAAAGCCTTGTTC--ATCATGGCAAAGGCCTAGCAAAAAT-CACCCATACTGGTGCTGCCCCTA-CCCCTGACTACT-C---CCCTCCTGCTTCTCTATGTTCACCCTTCCCTCAAGCTAAGGATA
s panTro5.chr15              63515761 195 +  83230942 AGCTTTGCTGCTGTGTCATCCATCCACGTTATTCCTG-CTGGCTGTAGATATTCTGCTTGCTCCCTA-TCTGTGTT--TGTCAAAGCCTTGTTC--ATCACGGCAAAGGCCTAGCAAAAAT-CACCCATACTGGTGCTGCCCCTA-CCCCTGACTACT-C---CCCTCCTGCTTCTCTATGTTCACCCTTCCCTCAAGCTAAGGATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80472848 195 +  99763055 AGCTTTGCTGCTGTGTCATCCATCCACGTTATTCCTG-CTGGCTGTAGATATTCTGCTTGCTCCCTA-TCTGTGTT--TGTCAAAGCCTTGTTC--ATCACGGCAAAGGCCTAGCAAAAAT-CACCCATACTGGTGCTGCCCCTA-CCCCTGACTACT-C---CCCTCCTGCTTCTCTATGTTCACCCTTCCCTCAAGCTAAGGATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73035 195 -   1709092 AGCTTTGCTGCTGTGTCATCCATCCACGTTATTCATG-CTGGCTGTAGATATTCTGCTTGCTCCCTA-TCTGTGTT--TGTCAAAGCCTTGTTC--ATCATGGCAAAGGCCTAGCAAAAAT-CACCCATACTGGTGCTGCCCCTA-CCCCTGACTACT-C---CCCTCCTGCTTCTCTATGTTCACCCTTCCCTCAAGCTAAGGATA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60913088 196 + 169600520 AGCTTTGCTGCTGTGTCATCCATCCACATTATTCCTG-CTGGCTGTAGATATTCTGCTTGCCCCCTA-TCTGTGTT--TGTCAAAGCCTTGTTC--ATCACTGCAAAGGCCTACCAAGAAT-CACCCATACTGGTGCTGCCCCTACCCCCTGACTACT-C---TTCTCCTGCTTCTCTGTGTTCACCCTTTCCTCAAGCTAAAGATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108439830 196 - 171882078 AGCTTTGCTGCTGTGTCATCCATCCACATTATTCCTG-CTGGCTGTAGATATTCTGCTTGTCCCCTA-TCTGTGTT--TGTCAAAGCCTTGTTC--ATCACTGCAAAGGCCTACCAAGAAT-CACCCATACTGGTGCTGCCCCTACCCCCTGACTACT-C---TTCTCCTGCTTCTCTGTGTTCACCCTTTCCTCAAGCTAAGGATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53200 196 -   2311642 AGCTTTGCTGCTGTGTCATCCATCCACATTATTCCTG-CTGGCTGTAGATATTCTGCTTGCCCCCTA-TCTGTGTT--TGTCAAAGCCTTGTTC--ATCACTGCAAAGGCCTACCAAGAAT-CACCCATACTGGTGCTGCCCCTACCCCCTGACTACT-C---TTCTCCTGCTTCTCTGTGTTCACCCTTTCCTCAAGCTAAGGATA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        48770 196 -   1987038 AGCTTTGCTGCTGTGTCATCCATCCACATTATTCCTG-CTGGCTATAGATATTCTGCTTGCCCCCTA-TCTGTGTT--TGTCAAAGCCTTGTTC--ATCACTGCAAAGGCCTACCAAGAAT-CACCCATACTGGTGCTGCCCCTACCCCCTGACTACT-C---TTCTCCTGCTTCTCTGTGTTCACCCTTTCCTCAAGCTAAGGATA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21129050 196 -  24206276 AGCTTTGCTGCTGTGTCATCCATCCACATTATTCCTG-CTGGCTGTAGATATTCTGCTTGCCCCCTA-TCTGCGTT--TGTCAAAGCCTTGTTC--ATCACTGCAAAGGCCTACCAAGAAT-CACCCATACTGGTGCTGCCCCTACCCCCTGACTACT-C---TTCTCCTGCTTCTCTGTGTTCACCCTTTCCTCAAGCTAAGGATA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        51865 196 -   1397330 AGCTTTGCCGCTGTGTCATCCATCCACATTATTCCTG-CTGGCTGTAGATATTCTGCTTGCCCCCTA-TCTGTGTT--TGTCAAAGCCTTGTTC--ATCACTGCAAAGGCCTACCAAGAAT-CACCCATACTGGTGCTGCCCCTACCCCCTGACTACT-C---TTCTCCTGCTTCTCTGTGTTTACCCTTTCCTCAAGCTAAGGATA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        67653 196 -   1784207 AGCTTTGCTGCTGTGTCATCCATCCACGTTATTCCTG-CTGGCTGTAGATATTCTGCTTGCCCCCTA-TCTGTGTT--TGTCAAAGCCTTGTTC--ATCACTGCAAAGGCCTATCAAGAAT-CACCCATACTGATGCTGCCCCTACCCCCTGACTACT-C---TTCTCCTGCTTCTCTGTGTTCACCCTTCCCTCAAGCTAAGGATA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22270370 191 + 158406734 AGCTTTGCTAC--TGTCATCCATCCACATTATTCTTG-CTGGCTGTAGAAACTCTGCTTGTTCCCTA-TCTGTGTT--TGTCAAAGCCTTGTTC--ATCACTGCAAAGGCCAAGCAAGAAT-TGCCCATACTGGTGCTGCCCCCA-CCCCTGACTACT-----CCCTCTTGCTTCTCTACATTCACCCTTCCCTC-AGCTAAGCATA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50501447 195 +  54856640 AGCTTTGCTGCTGTGTCATCCATCCACGGTATTCCTG-CTGGCTGTAGATACTCTGCTTGTTCCCTA-TCTGTGTT--TGTCAAAGCCTTGTTC--ATCACTGCAAAGGTCAAGCAAGAAT-TGCCCATATTGGTGCTGTCCCTA-CCCCTGACTACTCC---CCCTCTTGCTTCTCTACATTCACCCTTCCCTC-AGCTAAGCATA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       644461 189 -   2910086 AGCTTTGCTGCTGTGTCATCCATCCACGTTATTCCTG-CTGGCTGTAGATACTCTGCTTGTTCCCTG-TC--TGTT--TGTCAAAGCCTTGTTC--ATCACTGCAAAGGCCAAGCAAGAAC-TGCCCATACTGGTGCTGTCCCCA-CCC--GACTACT-----TCCTCCTGCTTCTCTATGTTCACCCTTCCCTC-AGCTAAGCATA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672064 193 +  42888418 ATCCTTGCTGCTGTGTCATCCATCCACGTTATTCCTG-CTGGCTGTAGATACTCTGCTTATTCCCTA-TCTGTGTT--TGTCAAAGCCTTGTTC--ATCACTGTAAACGCCAAGCAAGAAT-TGCCCATATTGGCGCTGCCCTCA-CCCCTGACTACT-----CCCTCCTGCTTCTCTATGTTCATCCTTCCCTC-AGCTAAGCATA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113295278 194 + 116334831 AGCTGTGCTGCTGTGTCATCCATCCACATTATTCCTGTCTGGCAATAGATACTCTGCTTGCTCCCTTGTC--TATT--TGTCAAAG-CTTGTTC--ATCACCGCACAGGCTGAGCAAGAACTCACCCATACTGGTGCTGCTCCCA-CCCCAGACTATT-----CCATCCTGTTTCTCTATGTTCACTTTTCCCTCAAGCTAAGGATA
i micMur3.chr9              I 18 I 387
s proCoq1.NW_012142813v1        40282 195 +     80520 AGCCATGCTGCTGTGTCATCCATTCACGTTATTCCTGTCTGGCAGTAGATACTCTGCTTGCTCTCTTGTCTGTGTT--TGTCAAAG-CTTGTTC--ATCACTGCACAGGCTGAGCAAGAACTCACCCATACTGGTGCTGCTCCCA-CCCCAGACTACT-----CCCTCCTGCTCCTCTACCTTCACCTTT-CCTCAAGCTAAGGATA
i proCoq1.NW_012142813v1    I 8 C 0
s otoGar3.GL873530             656946 169 -  36342412 AACTGTGCTGCTCTATCACCC-TCTGCACTACTCCTATCTCACAGCAGACACTCTGCCTGCTCCCTG-----TGTT--TGTCACAG-CCTATCT--GTCATGG-------------------CACCCATACTGGAGCTGCTCCCA-CCC--GACAACT-----CCCTCCTATTTCTCTGTGCTCACCCTTCACTCACGCTAAGGGTA
i otoGar3.GL873530          I 8 C 0
s mm10.chr7                  81373851 192 + 145441459 AGCTGAGCTGCTGTGTCATCCACCTACATTATTCCTGTCTGGCTGGAGATACCCTGCTTGC-------TCTTTGTG--TGTCAAAGCTGTATTCTTATCACTGTACAGGCTGAGGAAGAATGCACCCATATTAGAGCTGTCCCTG-CCCCTAACT-CT-G---CTCCTTTGCTCCCCTATGTCCACCTTTCCTCCAAGCTAAGGCTA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54434044 171 +  91889043 AGCTTTGCTGCTGTGTCATCCATCCACGTTATTCCTGTCTGGCTGTAGATACTCTGCTTGCTCCCTG-------TT--TGTTAAAGCCCTGCTC--ACCACTG-------------------TACCA----TGCTGTTGTCCTCA-CCCCAGAACACT-CACTCCCTCCTGCTTCTCTATGTTCACCCTTCACACAAACTAAGGATA
i canFam3.chr3              I 2 C 0
s dasNov3.JH570731            1829057 171 +   3943991 AGCTTTGTTGCTGCGTCATCCATCCACGTTATTC----CTGGCTGCAGATACCCTGCATATTCCTTG-TCTGTGTTTATGTCAAAGCCTTGCTC--ACCTCTGCACAGGCTGAGCGAGAACCTACCCGTGCTGGTGCTGCCCCCA-CCCCAGGCCATA-C---CC------------------------TTCCTCACACTGAGTATA
i dasNov3.JH570731          C 0 C 0
e nomLeu3.chr6               17231784 906 - 121039945 M

a score=30197.000000
s hg38.chr15_KI270850v1_alt    362551 2 +    430880 TA
s panTro5.chr15              63515956 2 +  83230942 TA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473043 2 +  99763055 TA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73230 2 -   1709092 TA
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60913284 2 + 169600520 TA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440026 2 - 171882078 TA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53396 2 -   2311642 TA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        48966 2 -   1987038 TA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21129246 2 -  24206276 TA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52061 2 -   1397330 TA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        67849 2 -   1784207 TA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22270561 2 + 158406734 TA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50501642 2 +  54856640 TA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       644650 2 -   2910086 TA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672257 2 +  42888418 TA
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        40477 2 +     80520 TA
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             657115 2 -  36342412 CA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81374043 2 + 145441459 TA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54434215 2 +  91889043 TA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1829228 2 +   3943991 CA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113295472 387 + 116334831 I
e nomLeu3.chr6               17231784 906 - 121039945 M

a score=42093.000000
s hg38.chr15_KI270850v1_alt    362553 3 +    430880 CTT
s panTro5.chr15              63515958 3 +  83230942 CTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473045 3 +  99763055 CTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73232 3 -   1709092 CTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17232690 3 - 121039945 CTT
i nomLeu3.chr6              M 906 C 0
s rheMac8.chr7               60913286 3 + 169600520 TTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440028 3 - 171882078 TTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53398 3 -   2311642 TTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        48968 3 -   1987038 TTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21129248 3 -  24206276 TTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52063 3 -   1397330 TTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        67851 3 -   1784207 TTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22270563 3 + 158406734 CTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50501644 3 +  54856640 CTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       644652 3 -   2910086 CTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672259 3 +  42888418 CTT
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        40479 3 +     80520 CTT
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             657117 3 -  36342412 Ctt
i otoGar3.GL873530          C 0 I 266
s mm10.chr7                  81374045 3 + 145441459 CTG
i mm10.chr7                 C 0 I 1
s canFam3.chr3               54434217 3 +  91889043 CTT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1829230 3 +   3943991 CTT
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113295472 387 + 116334831 I

a score=19558.000000
s hg38.chr15_KI270850v1_alt    362556 2 +    430880 TA
s panTro5.chr15              63515961 2 +  83230942 TA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473048 2 +  99763055 TA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73235 2 -   1709092 TA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17232693 2 - 121039945 TA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60913289 2 + 169600520 TA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440031 2 - 171882078 TA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53401 2 -   2311642 TA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        48971 2 -   1987038 TA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21129251 2 -  24206276 TA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52066 2 -   1397330 TA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        67854 2 -   1784207 TA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22270566 2 + 158406734 CA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50501647 2 +  54856640 CA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       644655 2 -   2910086 CA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672262 2 +  42888418 CA
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        40482 2 +     80520 TA
i proCoq1.NW_012142813v1    C 0 I 362
s otoGar3.GL873530             657386 2 -  36342412 TA
i otoGar3.GL873530          I 266 I 8
s mm10.chr7                  81374049 1 + 145441459 T-
i mm10.chr7                 I 1 C 0
s canFam3.chr3               54434220 2 +  91889043 TA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1829233 2 +   3943991 TA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113295472 387 + 116334831 I

a score=689619.000000
s hg38.chr15_KI270850v1_alt    362558 65 +    430880 GACTTCACCCATACATATTAGTTACCAAAA-CACA-AT-GCTTCCTTCAAAAACATCCATATTTAAGT
s panTro5.chr15              63515963 65 +  83230942 GACTTCACCCATACATATTAGTTACCAAAA-CACA-AT-GCTTCCTTCAAAAACATCCATGTTTAAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473050 65 +  99763055 GACTTCACCCATACATATTAGTTACCAAAA-CACA-AT-GCTTCCTTCAAAAACATCCATGTTTAAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73237 65 -   1709092 GACTTCACCCATACATATTAGTTACCAAAA-CACA-AT-GCTTCCTTCAAAAACATCCATATTTAAGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17232695 65 - 121039945 GACTTCACCCATACATATTAGTTACCAAAAGCATA-AT-GCTTCCTTC-AAAACATCCATATTTAAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60913291 65 + 169600520 GACTTCACCCACACGTATTAGTTACCAAAG-CAGA-AT-GCTTCCTTTAAAAACATCCATATTTAAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440033 65 - 171882078 GACTTCACCCACACGTATTAGTTACCAAAG-CAGA-AT-GCTTCCTTTAAAAACATCCATATTTAAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53403 65 -   2311642 GACTTCACCCACACGTATTAGTTACCAAAG-CAGA-AT-GCTTCCTTTAAAAACATCCATATTTAAGT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        48973 65 -   1987038 GACTTCACCCACACGTATTAGTTACCAAAG-CAGA-AG-GCTTCCTTTAAAAACATCCATATTTAAGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21129253 65 -  24206276 GACTTCACCCACACATATTAGTTACCAAAG-CAGA-AT-GCTTCCTTTAAAAACATCCATATTTAAGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52068 65 -   1397330 GACTTCACCCACACGTATTAGTTACCAAAG-CAGA-AT-GCTTCCTTTAAAAACATCCATATTTAAGT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        67856 65 -   1784207 GACTTCACCCATACATATTAGTTACCAAAG-CATA-AT-GCTTCCTTCAAAAACATCCATATTTAAGT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22270568 56 + 158406734 GACTTCACCCATATGTATTAGTTACCAAAG-C----AT-GTTTCCTT------TATCCATACTTAAGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50501649 59 +  54856640 GACTTCACCCATATGTATTAGTTACCAAAG-CATA-AT-GCTTCCTT------CATCCATACTTACGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       644657 59 -   2910086 GACTTCACCCATATGTATTAGTTATCAAAG-CATA-AG-GCTTCCTT------CATCCATACTTAAGT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672264 58 +  42888418 GACTTCACTCATATGTATTAGTTACCAAAG-CATA-AT-GCTT-CTT------CATCCATACTTAAGT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             657396 58 -  36342412 AAATTAACTCACATGCGTTAATTACAAAAG-CATG-AT-GCTTCCCTAAAA-------ACATTTAAGT
i otoGar3.GL873530          I 8 C 0
s mm10.chr7                  81374050 56 + 145441459 AAATTAACTCATGT----------CTTAAA-TATATTT-TTTTCCTTTTAAGCCATTCACTTCTAggt
i mm10.chr7                 C 0 I 7524
s canFam3.chr3               54434222 65 +  91889043 AAAATTATTTTTATGTACTAATTACAAAAA-TGTA-AT-GCTACCTTTAAGACAATCCACATTTAAGT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1829235 65 +   3943991 -AAAAGAGCCATATGCATTAATTATTAAAA-CACA-GTGGCTTCCTTTAAAAACATCCAAATTTAAAC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113295472 387 + 116334831 I
e proCoq1.NW_012142813v1        40484 362 +     80520 I

a score=370420.000000
s hg38.chr15_KI270850v1_alt    362623 33 +    430880 ATCTATTC--TCCC-CTACACCAAATATCTATATAA
s panTro5.chr15              63516028 33 +  83230942 ATCTATTC--CCCC-CTACGCCAAATATCTATATAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473115 33 +  99763055 ATCTATTC--CCCC-CTACGCCAAATATCTATATAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73302 33 -   1709092 ATCTATTC--CCCC-CTAAGTCAAATATCTATATAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17232760 32 - 121039945 ATCTATTC--CCCC-C-AAGCCAAATATCTATATAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60913356 33 + 169600520 ATCTATTC--CCCC-CTAAACCAAGTATCTATATAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440098 33 - 171882078 ATCTATTC--CCCC-CTAAACCAAGTATCTATATAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53468 33 -   2311642 ATCTATTC--CCCC-CTAAACCAAGTATCTATATAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        49038 33 -   1987038 ATCTATTC--CCCC-CTAAACCAAGTGTCTATATAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21129318 33 -  24206276 ATCTATTC--CCCC-CTAAACCAAGTATCTATATAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52133 33 -   1397330 ATCTATTC--CCCC-CTAAACCAAGTGTCTATATAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        67921 33 -   1784207 ATCTATTC--TCCC-CTAAACCAAGTATCTATATAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22270624 33 + 158406734 ATCTAGTC--CCCC-CTAAATCAAGTATCTATATAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50501708 33 +  54856640 ATCTATTG--CCCC-CTAAATGAAGTATCTATATAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       644716 32 -   2910086 ATCTATTC--CCCC-C-AAATCAAGTATCTATATAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672322 33 +  42888418 ATCTATTC--CCCC-CTAAATCAAGTATCTATATAA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             657454 34 -  36342412 AGCTAATC--CCCCTCCAAAGCAGGTATCTATATAA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54434287 32 +  91889043 ACCCA-TG--TCCC-ATAAACCAGCTATCCATTTAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1829300 35 +   3943991 ATCCATTCCACTCC-CCAAACCAGGAAACTATGTAG
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113295472 387 + 116334831 I
e proCoq1.NW_012142813v1        40484 362 +     80520 I
e mm10.chr7                  81374106 7524 + 145441459 I

a score=1284200.000000
s hg38.chr15_KI270850v1_alt    362656 114 +    430880 T---CCC--CATACCCCAATCTGAGGGCATCTA-TGTCTAGAAGCAGCC----ATTTT-CTACCCATT----AA--AATCAGGGTGACTGTGCATATGATTACCCCCATCCCTCACGAGGAGAGA-------ATCAAC------------
s panTro5.chr15              63516061 116 +  83230942 T---CCCCTCATACCCCAATCTGAGGGCATCTA-TGTCTAGAAGCAGCC----ATTCT-CTACCCATT----AA--AATCAGGGTGACTGTGCATATGATTACCCCCATCCCTCACGAGGAGAGA-------ATCAAC------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473148 116 +  99763055 T---CCCCTCATACCCCAATCTGAGGGCATCTA-TGTCTAGAAGCAGCC----ATTCT-CTACCCATT----AA--AATCAGGGTGACTGTGCATATGATTACCCCCATCCCTCACGAGGAGAGA-------ATCAAC------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73335 116 -   1709092 T---CCCCTCATACCCCAATCTGAGGGCATCTA-TGTCTAGAAGCAGCC----ATTCT-CTACCCATT----AA--AATCAGGGTGACTGTGCATATGATTACCCCCATCCCTCACGAGGAGAGA-------ATCAAC------------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17232792 116 - 121039945 T---CCCCTCATACCCCAATCTGAGGGCATCTA-TGTCTAGAAGCAGCC----ATTCT-CTACCCGTT----AA--AATCAGGGTGACTGTGCATATGATTACCCCCATCCCTCACAAGGAGAGA-------ATCAAC------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60913389 115 + 169600520 T---CCCCTCATACCCCAATCTGAGGGCATCTA-TGTCTAGAAGCAGCC----ATTCT-CCAACCGTT----AA--AATCAGGGTAACTGTGCATAT-ATTACCCCCATCCCTCATGAGGAGAGA-------ATCAAC------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440131 116 - 171882078 T---CCCCTCATACCCCAATCTGAGGGCATCTA-TGTCTAGAAGCAGCC----ATTCT-CCAACCGTT----AA--AATCAGGGTAACTGTGCATATGATTACCCCCATCCCTCATGAGGAGAGA-------ATCAAC------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53501 116 -   2311642 T---CCCCTCATACCCCAATCTGAGGGCATCTA-TGTCTAGAAGCAGCC----ATTCT-CCAACCGTT----AA--AATCAGGGTAACTGTGCATATGATTACCCCCATCCCTCATGAGGAGAGA-------ACCAAC------------
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        49071 116 -   1987038 T---CCCCTCATACCCCAATCTGAGGGCATCTA-TGTCTAGAAGCAGCC----ATTCT-CCAACCGTT----AA--AATCAGGGTAACTGTGCATATGATTACCCCCATCCCTCACAAGGAGAGA-------ATCAAC------------
i cerAty1.NW_012002657v1    C 0 I 32
s chlSab2.chr29              21129351 116 -  24206276 T---CCCCTCATACCTCAATCTGAGGGCATCTA-TGTCTAGAAGCAGCC----ATTCT-CCAACCGTT----AA--AATCAGGGTAACTGTGCATATGATTACCCCCATCCCTCACGAGGAGAGA-------ATCAAC------------
i chlSab2.chr29             C 0 I 32
s manLeu1.NW_012106908v1        52166 116 -   1397330 T---CCCCTCATACCCCAATCTGAGGGCATCTA-TGTCTAGAAGCAGCC----ATTCT-CCAACCGTT----AA--AATCAGGGTAACTGTGCATATGATTACCCCCATCCCTCACGAGGAGAGA-------ATCAAC------------
i manLeu1.NW_012106908v1    C 0 I 32
s colAng1.NW_012117110v1        67954 115 -   1784207 T---CCCCTCATACCCCAATCTG-GAGCATCTA-TGTCTAGAAGCAGCC----ATTCT-CCACCCATT----AA--AACCAGGGTAACTGTGCATATGATTACCCCCATCCCTCACAAGGAGAGA-------ATCAAC------------
i colAng1.NW_012117110v1    C 0 I 29
s calJac3.chr6               22270657 113 + 158406734 T---CCTCTC-TACCCCAAACTGAGGGCATCTA-TGTCTAGAAGTAGCC----ATTCT-CTACCCATT----AA--AATGAGGGTAAC--TGCAGGTGATTACCCTCATCCCTCACTCAGAGAGA-------ATCAAC------------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50501741 115 +  54856640 T---CCTCTC-TACCCCAAACTGAGGGCATCTA-TGTCTAGAAGCAGCC----ATTCT-CTACCCGTT----AA--AATCAGGGTAACTGTGCAGATGATTACCCTCATCCCTCACTCAGAGAGA-------ATCAAC------------
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       644748 115 -   2910086 T---CCTCTC-TATCCCAAACTGAGGGCATCTA-TGTCTAGAAGCAGCC----ATTCT-CTACCTATT----AA--AATCAGGGTAACTGTGCAGATGATTACCCTCATCCCTCACGCAGAGACA-------ATCAAC------------
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672355 115 +  42888418 T---CCTCTC-TACCCCAAACTGAGGGCATCTA-TGTCTAGAAGTAGCC----ATTCT-CTACCTGTT----AA--AATCAGGGCAACTGTGCAGATGATTACCCTCATCCCTCACTCAGAGAGA-------ATCAAC------------
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             657488 114 -  36342412 TTAATCCCTTCTA-CCCAATCCAATAGCATCTA-TGTC----AACAGTC----ATTCTGCTCCCCATTCTGCAATCAATCAGGGCATCTGAGCTAAAGGCTATTCTCACCCCTCA-------GGA-------ATCTAA------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81381630 123 + 145441459 ----TCTCTC-TACCCTAACTAAAAAGTATTTATTGTCCAGAAGTAGCT----ATTTT-CCTTTTATT--TCAA--AATCAGAATATATGTATATATGGATACT-TTGCACCTCAGACAGAGAAATATAATCATTAGC------------
i mm10.chr7                 I 7524 C 0
s canFam3.chr3               54434319 115 +  91889043 T---CCCTTC-CACCTCACGGTGAGGCCTCCTA-TGCCTAGAAGCTACT----GCCCC-CCAACCTCT----AA--AATGAGAGTATTTGTGTCTGTGACTACCCCCATGCCCCTGGCAAAGAGA-------ATCTAA------------
i canFam3.chr3              C 0 I 8
s dasNov3.JH570731            1829335 110 +   3943991 T---TCCTTCA---------------------G-TATCTAAAACTAGCCTTTTCTTCC-CCCCCTTCT----GA--AATCAGGGCATCTGTGTATATGGCTACC-CCACATCCCAGGCAGAGAGA-------ATCTATCTAATCATCAAC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113295472 387 + 116334831 I
e proCoq1.NW_012142813v1        40484 362 +     80520 I

a score=9555.000000
s hg38.chr15_KI270850v1_alt    362770 1 +    430880 T
s panTro5.chr15              63516177 1 +  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473264 1 +  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73451 1 -   1709092 T
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17232908 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60913504 1 + 169600520 T
i rheMac8.chr7              C 0 I 31
s macFas5.chr7              108440247 1 - 171882078 T
i macFas5.chr7              C 0 I 31
s macNem1.NW_012011945v1        53617 1 -   2311642 T
i macNem1.NW_012011945v1    C 0 I 31
s calJac3.chr6               22270770 1 + 158406734 T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50501856 1 +  54856640 T
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       644863 1 -   2910086 T
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672470 1 +  42888418 T
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81381753 1 + 145441459 T
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54434442 1 +  91889043 T
i canFam3.chr3              I 8 C 0
s dasNov3.JH570731            1829445 1 +   3943991 T
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113295472 387 + 116334831 I
e proCoq1.NW_012142813v1        40484 362 +     80520 I
e otoGar3.GL873530             657602 0 -  36342412 C
e colAng1.NW_012117110v1        68069 29 -   1784207 I
e manLeu1.NW_012106908v1        52282 32 -   1397330 I
e chlSab2.chr29              21129467 32 -  24206276 I
e cerAty1.NW_012002657v1        49187 32 -   1987038 I

a score=62372.000000
s hg38.chr15_KI270850v1_alt    362771 14 +    430880 ATGCTcttgctact
s panTro5.chr15              63516178 14 +  83230942 ATGCTcttgctact
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473265 14 +  99763055 ATGCTcttgctact
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73452 14 -   1709092 ATGCTcttgctact
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17232909 14 - 121039945 ATGCTcttgctact
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22270771 14 + 158406734 ATGCTcttgctatt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50501857 14 +  54856640 ATGCTcttgctatt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       644864 14 -   2910086 ATGCTcttgctatt
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672471 14 +  42888418 ATGCTcttgctatt
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             657602  6 -  36342412 --------gctact
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81381754 14 + 145441459 ATACTcttgttact
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54434443 11 +  91889043 ACACtgctgcc---
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1829446 14 +   3943991 ATACTctggttatt
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113295472 387 + 116334831 I
e proCoq1.NW_012142813v1        40484 362 +     80520 I
e colAng1.NW_012117110v1        68069 29 -   1784207 I
e manLeu1.NW_012106908v1        52282 32 -   1397330 I
e chlSab2.chr29              21129467 32 -  24206276 I
e cerAty1.NW_012002657v1        49187 32 -   1987038 I
e macNem1.NW_012011945v1        53618 31 -   2311642 I
e macFas5.chr7              108440248 31 - 171882078 I
e rheMac8.chr7               60913505 31 + 169600520 I

a score=1602462.000000
s hg38.chr15_KI270850v1_alt    362785 134 +    430880 -caaaatacagtg----tggcagaccagcaatatgagcatcaccaggagcttgttataaatactgagtctcaggccccaccc-aagaccgacagaattga------gatctgc--attttaacaagatccccagttaatatatatgta
s panTro5.chr15              63516192 134 +  83230942 -caaaatacagtg----tggcagaccagcaatatgagcatcaccaggagcttgttataaatactgagtctcaggccccaccc-aagactgacagaattga------gatctgc--attttaacaagatccccagttaatatgtatgta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473279 134 +  99763055 -caaaatacagtg----tggcagaccagcaatatgagcatcaccaggagcttgttataaatactgagtctcaggccccaccc-aagactgacagaattga------gatctgc--attttaacaagatccccagttaatatgtatgta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73466 134 -   1709092 -caaaatacagtg----tggcagaccagcaatatgagcatcaccaggagcttgttataaatactgagtctcaggccccaccc-aagaccgacagaattga------gatctgc--atattaacaagatccccagttaatatatatgta
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17232923 134 - 121039945 -caaaatacagtg----tggcagaccagcaatatgagcatcaccaggagcttgttataaatactgagtctcaggccccacca-aagaccgacagaattga------gatctgc--attttaacaagatccccagttaatatatatgta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60913536 126 + 169600520 -CAATATACagta----tggcagaccagcaatatgagcatcaccaggagcttgtt----atac----tctcaggccccaccc-aagactgacagaattga------gatctgc--attttaacaagatccccagttaatatacatgta
i rheMac8.chr7              I 31 C 0
s macFas5.chr7              108440279 130 - 171882078 -CAATATaaagta----tggcagaccagcaatatgagcatcaccaggagcttgttataaatac----tctcaggccccaccc-aagactgacagaattga------gatctgc--attttaacaagatccccagttaatatacatgta
i macFas5.chr7              I 31 C 0
s macNem1.NW_012011945v1        53649 130 -   2311642 -CAATATACAGTA----TGGCAgaccagcaatatgagcatcaccaggagcttgttataaatac----tctcaggccccaccc-aagactgacagaattga------gatctgc--attttaacaagatccccagttaatatacatgta
i macNem1.NW_012011945v1    I 31 C 0
s cerAty1.NW_012002657v1        49219 130 -   1987038 -CAATATACAGTA----TGGCAgaccagcaatatgagcatcaccaggagcttgttataaatac----tctcaggccccaccc-aaaactgacagaattga------gatctgc--attttaacaagatccccagttaatatatatgta
i cerAty1.NW_012002657v1    I 32 C 0
s chlSab2.chr29              21129499 130 -  24206276 -CAATATACagta----tggcagaccagcaatatgagcatcaccaggagcttgttataaatac----tctcgggccccaccc-aagactgacagaattga------gatctgc--attttaacaagatccccagttaacatatatgta
i chlSab2.chr29             I 32 C 0
s manLeu1.NW_012106908v1        52314 130 -   1397330 -CAATATACAGTA----TGGCAgaccagcaatatgagcatcaccaggagcttgttataaatac----tctcaggccccaccc-aaaactgacagaattga------gatctgc--attttaacaagatccccagttaatatatatgAA
i manLeu1.NW_012106908v1    I 32 C 0
s colAng1.NW_012117110v1        68098 130 -   1784207 -CAATATACagtg----tggcagaccagcaatatgagcatcaccaggagcttgttataaatac----tctcaggccccaccc-aagactgacagaattga------gatctgc--attttaacaagatccccagttaatatatatgta
i colAng1.NW_012117110v1    I 29 C 0
s calJac3.chr6               22270785 134 + 158406734 -caaagtatagtg----tgacagaccagcaatgtgagcagcaccaggagtttgttataaatcctgagtctcaggccccaccc-acgaccgatggaactga------gatttgc--attttaacaagattcctagttaatatatacgta
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50501871 134 +  54856640 -caaaatatagtg----tgatagaccagcaatgtgagcagcaccaggagtttgttataaatactgagtctcaggccccaccc-acgaccgatggaactga------gatttgc--attttaacaagattcccagttaatatatatgta
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       644878 134 -   2910086 -caaagtatagtg----tgacagaccagcaatgtgagcagcaccaggagtttgttataaatactgagtctcaggccccaccc-acgaccgatggaactga------gatttgc--attttaacaagattcccagttaatatatatgta
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672485 134 +  42888418 -caaagtatagtg----tgacagaccagcaatgtgagcagcaccaggagtttgttataaatactgagtctcaggccccaccc-acaactgatggaactga------gatttgc--attttaacaagattcccagttaatatatatgta
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             657608 126 -  36342412 -ggaattctggtg----tggcaggccagcaatgcca-cattaccagaagcttgctgtaaagactgaatctcagaccctgtct-gagagcaacagaactga------gacctgc--actttaataggactcccagctaatac-------
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81381768 124 + 145441459 --------cagtaatatcagcaagtctataccatcagtatcactgggaggctgtt-tacaaac----tcttaagatccactt-gaaacctgtggaattga------a--cttc--attttaataagattcccaattactacatatcta
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54434454 143 +  91889043 -caaagtctcatg----tgacagaccaacactagaagtaccaccagaaacttgttataaacacagaatctcagccccctccctgaaacctacggaattgatctgcggatctacggattttaacaagattcccagttgatatctatgca
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1829460 117 +   3943991 tagaagtgtagct----gggcaga-cagccacatcagcatcaccaaaagcttgttacaaatgcacaatcttaggctgctgtc------------------------aatctgt--attttaacaaaatttccagttaatacaaatgca
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113295472 387 + 116334831 I
e proCoq1.NW_012142813v1        40484 362 +     80520 I

a score=65348.000000
s hg38.chr15_KI270850v1_alt    362919 6 +    430880 tgcaaa-
s panTro5.chr15              63516326 6 +  83230942 tgcaaa-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473413 6 +  99763055 tgcaaa-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73600 6 -   1709092 tgcaaa-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233057 6 - 121039945 tgcaaa-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60913662 6 + 169600520 tgcaaa-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440409 6 - 171882078 tgcaaa-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53779 6 -   2311642 tgcaaa-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        49349 6 -   1987038 TGCAAA-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21129629 6 -  24206276 tgcaaa-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52444 6 -   1397330 TGCAAA-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        68228 6 -   1784207 TGCAAA-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22270919 6 + 158406734 tgcaaa-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50502005 6 +  54856640 tgcaaa-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       645012 6 -   2910086 tgcaaa-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672619 6 +  42888418 tgcaaa-
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81381892 6 + 145441459 tgcaca-
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1829577 6 +   3943991 -attaat
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113295472 387 + 116334831 I
e proCoq1.NW_012142813v1        40484 362 +     80520 I
e canFam3.chr3               54434597 0 +  91889043 C
e otoGar3.GL873530             657734 0 -  36342412 C

a score=96358.000000
s hg38.chr15_KI270850v1_alt    362925 11 +    430880 aaaagtttgag
s panTro5.chr15              63516332 11 +  83230942 aaaagtttgag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473419 11 +  99763055 aaaagtttgag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73606 11 -   1709092 aaaagtttgag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233063 11 - 121039945 aaaagtttgaA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60913668 11 + 169600520 aaaagttggag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440415 11 - 171882078 aaaagttggag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53785 11 -   2311642 aaaagttggag
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        49355 11 -   1987038 AAAAGTTGGAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21129635 11 -  24206276 aaaagttggag
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52450 11 -   1397330 AAAAGTTGGAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        68234 11 -   1784207 ACAAGTTGGAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22270925 11 + 158406734 gaaagtttgag
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50502011 11 +  54856640 gaaagtttgag
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       645018 11 -   2910086 gaaagtttgag
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672625 11 +  42888418 gaaagtttgag
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             657734  7 -  36342412 ----gtctgag
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH570731            1829583  3 +   3943991 --agg------
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113295472 387 + 116334831 I
e proCoq1.NW_012142813v1        40484 362 +     80520 I
e mm10.chr7                  81381898  0 + 145441459 C
e canFam3.chr3               54434597  0 +  91889043 C

a score=260254.000000
s hg38.chr15_KI270850v1_alt    362936 27 +    430880 Cagtcgg--gtgtggtggctcatgcctat
s panTro5.chr15              63516343 27 +  83230942 CAgtcgg--gtgtggtggctcatgcctat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473430 27 +  99763055 CAgtcgg--gtgtggtggctcatgcctat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73617 27 -   1709092 CAgtcgg--gtgtggtggctcatgcctat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233074 27 - 121039945 CAgtcgg--gtgtggtggctcatgcttat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60913679 27 + 169600520 CAgtcag--gtgtggtggcttatgcctat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440426 27 - 171882078 CAgtcag--gtgtggtggcttatgcctat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53796 27 -   2311642 CAgtcag--gtgtggtggcttatgcctat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        49366 27 -   1987038 CAgtcag--gtgtggtggcttatgcctat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21129646 27 -  24206276 CAgtcag--gtgtggtggcttatgcctat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52461 27 -   1397330 CAgtcag--gtgtggtggcttatgcctat
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        68245 27 -   1784207 CAgtcag--gtgtgggggcttatgcctat
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22270936 27 + 158406734 cagTTgg--gtatggtggctcatgcctat
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50502022 29 +  54856640 cagTTGGGTGTATggtagctcatgcctat
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       645029 27 -   2910086 CAgttgg--gtatggtggctcatgcctat
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672636 27 +  42888418 CAgttgg--gtatggtggctcacacctat
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1829586  9 +   3943991 --------------------tatgcccat
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113295472 387 + 116334831 I
e proCoq1.NW_012142813v1        40484 362 +     80520 I
e mm10.chr7                  81381898  0 + 145441459 C
e canFam3.chr3               54434597  0 +  91889043 C
e otoGar3.GL873530             657741  0 -  36342412 C

a score=915367.000000
s hg38.chr15_KI270850v1_alt    362963 89 +    430880 aatcccagaactttgggaagattgcttgagcccaggagttcaaggcagcagtgaaagccatgactgcaccactgtactccagcctgggc
s panTro5.chr15              63516370 89 +  83230942 aatcccagaactttgggaagattgcttgagcccaggagttcaaggcagcagtgagagccatgactgcaccactgtactccagcctgggc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473457 89 +  99763055 aatcccagaactttgggaagattgcttgagcccaggagttcaaggcagcagtgagagccatgactgcaccactgtactccagcctgggc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73644 89 -   1709092 aatcccagaactttgggaagattgcttgagcccaggagttcaaggcagcagtgagagccatgactgcaccactgtactccagcctgggc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233101 89 - 121039945 aatcccagaactttgggaagactgcttgagcccaggagttcaaggcagcagtgagagccatgactgcaccactgtactccagcctgggc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60913706 89 + 169600520 aatcccagaactttgggaagatcgcttgagcccaggagttcaaggcagcagtgagagccatgattgcaccacagtactccagcctgggc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440453 89 - 171882078 aatcccagaactttgggaagatcgcttgagcccaggagttcaaggcagcagtgagagccatgattgcaccacagtactccagcctgggc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53823 89 -   2311642 aatcccagaactttgggaagatcgcttgagcccaggagttcaaggcagcagtgagagccatgattgcaccacagtactccagcctgggc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        49393 89 -   1987038 aatcccagaactttgggaagatcgcttgagcccaggagttcaaggtagcagtgagagccatgattgcaccacagtactccagcctaggc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21129673 89 -  24206276 aatcccagaactttgggaagatcgcttgagcccaggagttcaaggcagcagtgagagccatgattgcaccacagtactccagcctgggc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52488 89 -   1397330 aatcccagaactttgggaagatcgcttgagcccaggagttcaaggtagcagtgagagccatgattgcaccacagtactccagcctgggc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        68272 89 -   1784207 aatcccagaactttgggaagatcgcttgagcccaggagttcaaggcagcagtgagagccatgactgcaccacagtactccagcctgggc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22270963 87 + 158406734 aatctcagcactttgggaagattgcttgagcccaggagttcaaggcatcagtg--agccatgattgccccactgtactccagcctgggc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50502051 87 +  54856640 aatcccagcactttgggaagactgcctgagcccatgagttcaaggcatcagtg--agccatgattgtaccactgtactccagcctgggt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       645056 87 -   2910086 aatctcagcactttgggaagattgcttgagcccaggagttcaaagcatcagtg--agccatgattgcaccactgtactccagcctgggc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672663 87 +  42888418 aatcccagaactttgggaagactgcttgagcccaggagttcaaggcatcagtg--agccatgattgcaccactgtactccagcctgggc
i aotNan1.NW_018505940v1    C 0 C 0
e micMur3.chr9              113295472 387 + 116334831 I
e proCoq1.NW_012142813v1        40484 362 +     80520 I
e mm10.chr7                  81381898  0 + 145441459 C
e dasNov3.JH570731            1829595  0 +   3943991 C
e canFam3.chr3               54434597  0 +  91889043 C
e otoGar3.GL873530             657741  0 -  36342412 C

a score=167496.000000
s hg38.chr15_KI270850v1_alt    363052 17 +    430880 gacaaagtagttcccat
s panTro5.chr15              63516459 17 +  83230942 gacaaagtagttcccat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473546 17 +  99763055 gacaaagtagttcccat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73733 17 -   1709092 gacaaagtagttcccat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233190 17 - 121039945 gacaaagcagtccccat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60913795 17 + 169600520 aacaaagcagtccccat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440542 17 - 171882078 aacaaagcagtccccat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53912 17 -   2311642 aacaaagcagtccccat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        49482 17 -   1987038 aacaaagcagtccccat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21129762 17 -  24206276 aacaaagcagtccccat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52577 17 -   1397330 aacaaagcagtccccat
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        68361 17 -   1784207 gacaaagcagtccccat
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22271050 17 + 158406734 gacaaagcagtccccat
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50502138 17 +  54856640 gacaaagcagtccccat
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       645143 17 -   2910086 gacaaagcagtctccat
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672750 17 +  42888418 aacaaagcagtccccat
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             657741  7 -  36342412 gacacag----------
i otoGar3.GL873530          C 0 C 0
e micMur3.chr9              113295472 387 + 116334831 I
e proCoq1.NW_012142813v1        40484 362 +     80520 I
e mm10.chr7                  81381898  0 + 145441459 C
e dasNov3.JH570731            1829595  0 +   3943991 C
e canFam3.chr3               54434597  0 +  91889043 C

a score=20456.000000
s hg38.chr15_KI270850v1_alt    363069 2 +    430880 ct
s panTro5.chr15              63516476 2 +  83230942 ct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473563 2 +  99763055 ct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73750 2 -   1709092 ct
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233207 2 - 121039945 ct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60913812 2 + 169600520 ct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440559 2 - 171882078 ct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53929 2 -   2311642 ct
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        49499 2 -   1987038 ct
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21129779 2 -  24206276 ct
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52594 2 -   1397330 ct
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        68378 2 -   1784207 ct
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22271067 2 + 158406734 tt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50502155 2 +  54856640 ct
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       645160 2 -   2910086 ct
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672767 2 +  42888418 ct
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54434597 2 +  91889043 ca
i canFam3.chr3              C 0 C 0
e micMur3.chr9              113295472 387 + 116334831 I
e proCoq1.NW_012142813v1        40484 362 +     80520 I
e mm10.chr7                  81381898 0 + 145441459 C
e dasNov3.JH570731            1829595 0 +   3943991 C
e otoGar3.GL873530             657748 0 -  36342412 C

a score=3789.000000
s hg38.chr15_KI270850v1_alt    363071 1 +    430880 c-
s panTro5.chr15              63516478 1 +  83230942 c-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473565 1 +  99763055 c-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73752 1 -   1709092 c-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233209 1 - 121039945 c-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60913814 1 + 169600520 c-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440561 1 - 171882078 c-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53931 1 -   2311642 c-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        49501 1 -   1987038 c-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21129781 1 -  24206276 c-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52596 1 -   1397330 c-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        68380 1 -   1784207 c-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22271069 1 + 158406734 c-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50502157 2 +  54856640 ca
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       645162 1 -   2910086 c-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672769 1 +  42888418 c-
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81381898 1 + 145441459 t-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54434599 1 +  91889043 t-
i canFam3.chr3              C 0 C 0
e micMur3.chr9              113295472 387 + 116334831 I
e proCoq1.NW_012142813v1        40484 362 +     80520 I
e dasNov3.JH570731            1829595 0 +   3943991 C
e otoGar3.GL873530             657748 0 -  36342412 C

a score=466719.000000
s hg38.chr15_KI270850v1_alt    363072 39 +    430880 aaaaGTTTGAACAGT----ACTGATGTGTACAACTAACACAAT
s panTro5.chr15              63516479 39 +  83230942 aaaaGTTTGAACAGT----ACTGATGTGTACAACTAACACAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473566 39 +  99763055 aaaaGTTTGAACAGT----ACTGATGTGTACAACTAACACAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73753 39 -   1709092 aaaaGTTTGAACAGT----ACTGATGTGTACAACTAACACAAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233210 39 - 121039945 aaaaGTTTGAACAGT----ACTGATGTATACAACTAACACAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60913815 39 + 169600520 aaaaGTTTGAACGGT----ACTGATATATACAACTAACGCAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440562 39 - 171882078 aaaaGTTTGAACGGT----ACTGATATATACAACTAACGCAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53932 39 -   2311642 aaaaGTTTGAACGGT----ACTGATATATACAACTAACGCAAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        49502 39 -   1987038 aaaaGTTTGAATGGT----ACTGATATATACAACTAACGCAAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21129782 39 -  24206276 aaaaGTTTGAACGGT----ACTGATATATACAACTAACGCAGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52597 39 -   1397330 aaaaGTTTGAATGGT----ACTGATATATACAACTAACGCAAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        68381 39 -   1784207 aaaaGTTTGAACGGT----ACTGATGTATACAACTAACACAAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22271070 39 + 158406734 aaaaGTTTGAAAAGT----ACTGATGTATACAACTAACAAAGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50502159 39 +  54856640 aaaaGTTTGAAAAGT----ACTGATGTATACAACTAACACAGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       645163 39 -   2910086 aaaaGTTTGAAAAGT----ACTGATGTAAACAACTAACACAGT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672770 39 +  42888418 aaaaGTTTGAAAAGT----ACTGATGTATGCAACTAACACAGT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             657748 39 -  36342412 aacagtgtgaggagc----actgGTCTACATGGCTACCACAAC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81381899 27 + 145441459 aaaaatctgggcagt----actgAGCCATAC------------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54434600 38 +  91889043 aaaagtctgagCGAT----ACT-ATCTATACAACTTCCACAAC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1829595 43 +   3943991 gaaagtttgagcagtaatgATTGATCTATACAATGACCGCACC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113295472 387 + 116334831 I
e proCoq1.NW_012142813v1        40484 362 +     80520 I

a score=126037.000000
s hg38.chr15_KI270850v1_alt    363111 8 +    430880 -CTTCCCAC
s panTro5.chr15              63516518 8 +  83230942 -CTTCCTAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473605 8 +  99763055 -CTTCCTAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73792 8 -   1709092 -CTTCCCAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233249 8 - 121039945 -CTTCCCAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60913854 8 + 169600520 -CCTCCCAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440601 8 - 171882078 -CCTCCCAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53971 8 -   2311642 -CCTCCCAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        49541 8 -   1987038 -CCTCCCAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21129821 8 -  24206276 -CCTCCCAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52636 8 -   1397330 -CCTCCCAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        68420 8 -   1784207 -CCTCCCAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22271109 8 + 158406734 -CTTCCCAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50502198 8 +  54856640 -CTTCCCAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       645202 8 -   2910086 -CTTCCCAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672809 8 +  42888418 -CTTCCCAC
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        40846 8 +     80520 -CTTCCTAT
i proCoq1.NW_012142813v1    I 362 C 0
s otoGar3.GL873530             657787 8 -  36342412 -CTTCCCAC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81381926 8 + 145441459 -CTTCCCAC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54434638 8 +  91889043 -CTTCACAC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1829638 9 +   3943991 CTTCCTCAC
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113295472 387 + 116334831 I

a score=1351267.000000
s hg38.chr15_KI270850v1_alt    363119 104 +    430880 CCCAAGCTGAAAGACCCCAGGCCTGAGCAACAGGTCTGTTAAACCCATTTAAGACCA-AATGGCTACATGCATCCAGGAGCTTGGAGTTCTACACACAGT--ATAAT
s panTro5.chr15              63516526 104 +  83230942 CCCAAGCTGAAAGACCCCAGGCCTGAGCAACAGGTCTGTTAAACCCATTTAAGACCA-AATGGCTACATGCATCCAGGAGCTTGGAGTTCTACACACAGT--ATAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473613 104 +  99763055 CCCAAGCTGAAAGACCCCAGGCCTGAGCAACAGGTCTGTTAAACCCATTTAAGACCA-AATGGCTACATGCATCCAGGAGCTTGGAGTTCTACACACAGT--ATAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73800 104 -   1709092 CCCAAGCTGAAAGACCGCAGGCCTGAGCAACAGGTCTGTTAAACCCATTTAAGACCA-AATGGCTACATGCATCCAGGAGCTTGGAGTTCTACACACAGT--ATAAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233257 104 - 121039945 CCCAAGCTGAAAGACCCCAGGCCTGAGCAACAGGTCTGTTAAACCCATTTAAGACCA-AATGGCTACATGCATCCAGGAGCGTGGAGTTCTACACACAGT--ATAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60913862 104 + 169600520 CCCAAGCTGAAAGAACGCAGGCCTGAACAACAGGTCTGTTAAACCTATTGAGGACCA-AATGGCTACATGAATCCAAGAGCTTGGAGTTTTACACACAGT--ATAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440609 104 - 171882078 CCCAAGCTGAAAGAACGCAGGCCTGAACAACAGGTCTGTTAAACCTATTGAGGACCA-AATGGCTACATGAATCCAAGAGCTTGGAGTTTTACACACAGT--ATAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        53979 102 -   2311642 CCCAAGCTGAAAGAACGCAGGCCTGAACAACAGGTCTGTTAAACCTATTGAGGACCA-AATGGCTACATGAATCCAAGAGCTTG--GTTTTACACACAGT--ATAAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        49549 104 -   1987038 CCCAAGCTGAAAGAACGCAGGCCTGAACAACAGGTCTGTTAAACCTATTGAGGACCA-AATGGCTACATGAATCCAAGAGCTTGGAGTTTTACACACAGT--ATAAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21129829 104 -  24206276 CCCAAGCTGAAAGAACGCAGGCCTGAGCAACAGGTCTGTTAAACCTATTGAGGACCA-AATGGCTACATGAATCCAAGAGCCTGGAGTTTTATACACAGT--ATAAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52644 104 -   1397330 CCCAAGCTGAAAGAACGCAGGCCTGAACAACAGGTCTGTTAAACCTATTGAGGACCA-AATGGCTACATGAATCCAAGAGCTTGGAGTTTTACACACAGT--ATAAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        68428 104 -   1784207 TCCAAGCTGAAAGAACGCAGGCCTGAGCAACAGGCCTGTTAAACCTATTGAGGACCA-AATGGCTACATGAATCCAAGAGCTTGGAGTTTTACACACAGT--ATAAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22271117 104 + 158406734 CCCAAGCTGAAAGACCCCAGGCCTGAGCAACAGGTCTGTTAAACCCTTTGAGGACCA-AATGGCTATATGAATCCAAGACCCTGGCGTTCTACACACAGT--ATAAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50502206 101 +  54856640 CCCAAGCTGAAAGACCCCAGGCCTGAGTAACAGGTCTGTTAAACC---TGAGGACCA-AATGGCTACATACATCCAAGAGCCTGGAGTTCTACACACAGT--GTAAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       645210 101 -   2910086 CCCAAGCTGAAAGACCCCAGGCCTGAGCAACAGGTCTGTTAAACC---TAAGAACCA-AATGGCTACATGCACCCAAGAGCCTGGAGTTCTACACACAGT--GTAAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672817 104 +  42888418 CCCAAGCTGAAAGACCCCAGGCCTGAGCAACAGGTCTGTTAAACCCTTTGAGGACCA-AATGGCTACATGCATCCAAGAGCCTGGAGTTCTACACACAGC--GTAAC
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113295859 103 + 116334831 CCCAAGTTGAAACGCCCCAGGCCTGAGAAATAGGTTGGTTAAACCCCTTGAGGACCA-AATGGCTACAAGCATCCAGAAGCCTGGGGATTTACAGACA-T--ATAAT
i micMur3.chr9              I 387 I 40
s proCoq1.NW_012142813v1        40854 103 +     80520 CCCAAGTTGAAACATCCCAGGCCTGAGCAATAGGTTGGGTAAACCCCTTGAAGATCA-AATGGCTACATGCATCCAGAAGCCTGGGGATTTACCTACA-C--ATAAT
i proCoq1.NW_012142813v1    C 0 I 3
s otoGar3.GL873530             657795  84 -  36342412 -CCCAGCTGGGAGAGTCTAGGCCTCAGCATTAGGATG-------------------A-AATGGCTGCCAACACCCAGAAGCCTAGAG-TCCACAAGCA-CAGACAAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81381934  80 + 145441459 CCCAA-----AAGACTTCAGCTATGAGCAAACAGTT------------------CCT-AATAGCTATATGAACCCA-GAGCCTGAAAAGCTACATATGGC--ATAAT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54434646  91 +  91889043 CCTGAGCTAACAGACC-CAGGCCCAGGCAGCAGGGCT--------CATTAAGGACAATGACGGCTACACACATCTGGATGCTCCAGAATCTAAACACAAC-------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1829647  80 +   3943991 TCCAAGC------------------------AGGTCTGTTTAACCCCTCCAGGAGCA-AATGGCTACAAGCACCCAGGGGCTTGGGGATGTAAACACAGT--ACAAT
i dasNov3.JH570731          C 0 C 0

a score=346729.000000
s hg38.chr15_KI270850v1_alt    363223 37 +    430880 TCTACCCTCACC----CCTACAACCCCC---ACCACAGACCTCA
s panTro5.chr15              63516630 37 +  83230942 TCTACCCTCACC----CCTACAACCCCC---ACCACAGACCTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473717 37 +  99763055 TCTACCCTCACC----CCTACAACCCCC---ACCACAGACCTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73904 37 -   1709092 TCTACCCTCACC----GATACAACCCCC---ACCACAGACCTCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233361 37 - 121039945 TCTACCCTCACC----CCTACAACCCCC---ACCACAGACCTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60913966 37 + 169600520 TCCACCCTCACC----CCCACAACCCCC---ACCACAGACCTCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440713 37 - 171882078 TCCACCCTCACC----CCCACAACCCCC---ACCACAGACCTCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        54081 37 -   2311642 TCCACCCTCACC----CCCACAACCCCC---ACCACAGACCTCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        49653 37 -   1987038 TCCACCCTCACC----CCCACAACCCCC---ACCACAGACCTCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21129933 37 -  24206276 TCCACCCTCACC----CCCACAACCCCC---ACCACAGACCTCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52748 37 -   1397330 TCCACCCTCACC----CCCACAACCCCC---ACCACAGACCTCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        68532 41 -   1784207 TCCACCCTCACCCCCACCCACAACCCCC---ACCACAGACCTCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22271221 40 + 158406734 TCTACCCTCACC----CGCACACACCCCACCACCACAGACTTCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50502307 40 +  54856640 TCTACCCTCAGC----CACACAAACCCCACAACCACAGACCTCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       645311 40 -   2910086 TCTACCCTCACC----CGCACAAACCCCACTACCACAGGCCTCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672921 40 +  42888418 TCTACCTTCACT----CGCACAAACCCCACCACCACAGACGTCA
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        40960 36 +     80520 TTTAACCTTGCC----C-CAGAACGACC---ACCACAGACCTCA
i proCoq1.NW_012142813v1    I 3 C 0
s otoGar3.GL873530             657879 10 -  36342412 ------------------------GCTA---ACCACA-------
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81382014 24 + 145441459 TTTAACCCCATT----TCCAGAGGTCTT----------------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54434737 37 +  91889043 CCGACCTTCCCG----CCCAGCATCCCT---GCTACAAGCTTCA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1829727 35 +   3943991 TCTACCCTCAGT----TACAGCACCCT----GCCACA-ATAACA
i dasNov3.JH570731          C 0 C 0
e micMur3.chr9              113295962 40 + 116334831 I

a score=1529167.000000
s hg38.chr15_KI270850v1_alt    363260 114 +    430880 CCTTCCTCC-TTATCCAGACATTCCTCAATCTGT--TGTTTCTTCTAGATAAAGA-TTTTCACTACCATTGTAGGATTTCTTCACTAGCTCC------------------------AACTCAATGCAGGCCATACCTGTTAA
s panTro5.chr15              63516667 114 +  83230942 CCTTCCTCC-TTATCCAGACATTCCTCAATCTGT--TGTTTCTTCCAGATAAAGA-TTTTCACTACCATTGTAAGATTTCTTCACTAGCTCC------------------------AACTCAATGCAGGCCATACCTGTTAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473754 114 +  99763055 CCTTCCTCC-TTATCCAGACATTCCTCAATCTGT--TGTTTCTTCCAGATAAAGA-TTTTCACTACCATTGTAAGATTTCTTCACTAGCTCC------------------------AACTCAATGCAGGCCATACCTGTTAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        73941 115 -   1709092 CCTTCCTCCTTTATCCAGACATTCCTCAATCTGT--TGTTTCTTCCAGATAAAGA-TTTTCACTACCATTGTAGGATTTCTTCACTAGCTCC------------------------AACTCAATGCAGGCCATACCTGTTAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233398 112 - 121039945 CCTTCCTCC-TTATCCAGACATTCCTCAATCTGT--TGTTTCTTCCAGATAAAGA---TTCACTACCATTGTAGGATTCCTTCACTAGATCC------------------------AACTCAATGCAGGCCATACCTGTTAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914003 114 + 169600520 CCTTCCTCC-TTATCTAGACATTCCTCAATCTGT--TGTTTCTTCCAGATAAagg-ttttccccatcattgtaggattccttcactagatcc------------------------aactcaatggaggccatacCTGTTAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440750 114 - 171882078 CCTTCCTCC-TTATCTAGACATTCCTCAATCTGT--TGTTTCTTCCAGATAAAGG-TTTTCCCCATCATTGTAGGATTCCTTCACTAGATCC------------------------AACTCAATGGAGGCCATACCTGTTAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        54118 114 -   2311642 CCTTCCTCC-TTATCTAGACATTCCTCAATCTGT--TGTTTCTTCCAGATAAagg-ttttccccatcattgtaggattccttcactagatcc------------------------aactcaatggaggccatacCTGTTAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        49690 114 -   1987038 CCTTCCTCC-TTATCTAGACATTCCTCAATCTGT--TGTTTCTTCCAGATAAagg-ttttccccatcattgtaggattccttcactagatcc------------------------aactcaatggaagccatacCTGTTAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21129970 114 -  24206276 CCTTCCTCC-TTATCTAGACATTCCTCAATCTGT--TGTTTCTTCCAGATAAAGG-TTTTCCCCATCATTGTAGGATTCCTTCACTAGATCC------------------------AACTCAATGGAGGCCACACCTGTTAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52785 114 -   1397330 CCTTCCTCC-TTATCTAGACATTCCTCAATCTGT--TGTTTCTTCCAGATAAagg-ttttccccatcattgtaggattccttcactagatcc------------------------aactcaatggaggccatacCTGTTAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        68573 114 -   1784207 CCTTCCTCC-TTATCCAGACATTCCTCAATCTGT--TATTTCTTCCAGATAAagg-ttttccctatcattgtaggattccttcactagctcc------------------------aactcaatggaggccataGCTGTTAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22271261  98 + 158406734 CTTTCCTCC-TTATCCAGACATTCC------------------TTCAGATAAAGG-TTTTCACTACCATTGTAGGATTCCTTCACTAGATCC------------------------TAATCAATGGAGGCCATACCTGTTAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50502347  94 +  54856640 CTTTCCTCC-TTATCCACA----CC------------------TCCAGATAAAGG-TTTTCACTACCATTGTAGGATTCCTTCACTAGATCC------------------------TCATCAATGGAGGCCATACCTGTTAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       645351  98 -   2910086 CTTTCCTCC-TTATCCAGACATTGC------------------TCCAGATAAAGG-TTTTTACTACCATTGTAGGATTCCTTCACTAGATCC------------------------TAACAAATGGAGGCCATACCTGTTAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40672961  98 +  42888418 CTTTCCTCC-TTATCCAGACATTCC------------------TCCAGATAAagg-ttttcactaccattgtaggattccttcactagatcc------------------------caatcaacggaggccatacCTGTTAA
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113296002 114 + 116334831 CCTTTATTC-TTATCCAGACATTCCCCAATCCAC--TGTTTCTTTAAGAGGGAGG-TTTTCACTATCATTGCAGGCTTCCTTCACTAGATCC-----------------------AAAATCAGTGGAGGCTGTACCTATT-A
i micMur3.chr9              I 40 C 0
s proCoq1.NW_012142813v1        40996 115 +     80520 CCTTTATCC-TTATCCAGACATTCCCCAATCCAC--TGTTTCTTTCAGAGAAAGG-TTTTCACTACCATTACAGGTTTCCTTCACTAGATCC----------------------AAAAATCAGTGGAGGCCATACCTGTT-A
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             657889 113 -  36342412 CCTTCATCC-TTACCCAGACATTCCCCAATGCCC--TGTCTCTCT--GATAGAAG-TTTCTGCTACCATTGAAGGATTTCTTCACTACATCC----------------------AAAAATCAATGGAGGCCATATTTGTT-A
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81382038 108 + 145441459 ----------TTACTCAGACATTCATTAACCCAGTATGTTTCTTCTACATAAAGGCTTTTTACTACCACTAAAGAATTCTTTAACTAGATTT------------------------AAAACATGAAAGgccaggcatggtga
i mm10.chr7                 C 0 I 10520
s canFam3.chr3               54434774 138 +  91889043 CCCCTGGCC-TTATCCAGACAATTTCCATTCTAC--CATTTCCTCCAGAAAAAGG-CTTTCACTACCACTGCAGGATTCCTTCACTAGATCaaaaaaaaaaaaaaaaagaaaaaaaaaaTCAATGGAGCCCATACCCATTAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1829762 115 +   3943991 CCTTTATTC-CTATGCAGACACTCCTTATAGCAC--TGTTTCTTCCAGGTAAAGA-CTTTTCTTACCATTGCAGGATTCTTTCACTAGATCC----------------------AAAAATCAGCGGAGTCCATACTTACTA-
i dasNov3.JH570731          C 0 C 0

a score=285856.000000
s hg38.chr15_KI270850v1_alt    363374 18 +    430880 AACCATTagtgtggcagg
s panTro5.chr15              63516781 18 +  83230942 AACCATTAGTGTGGCAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473868 18 +  99763055 AACCATTAGTGTGGCAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74056 18 -   1709092 AACCATTAGTGTGGCAGG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233510 18 - 121039945 AACCATTAGTGTGGCAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914117 18 + 169600520 AACCATTAGTGTGGCAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440864 18 - 171882078 AACCATTAGTGTGGCAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        54232 18 -   2311642 AACCATTagtgtggcagg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        49804 18 -   1987038 AACCATTagtgtggcagg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21130084 18 -  24206276 AATCATTAGTGTGGCAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52899 18 -   1397330 AACCATTagtgtggcagg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        68687 18 -   1784207 AACCATTAGTGTGGCAGG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22271359 18 + 158406734 AACTGTTAGTCTggccgg
i calJac3.chr6              C 0 I 3801
s saiBol1.JH378108           50502441 18 +  54856640 AACCGTTagtgtggcagg
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       645449 18 -   2910086 AACCATTagtgtggcagg
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40673059 18 +  42888418 AACCGTTagtgtggcagg
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113296116 18 + 116334831 AGCCCTTagtgtggcagg
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        41111 18 +     80520 AGCCGTTagtgtggcagg
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             658002 18 -  36342412 AGCCCTGAGTgtagcagg
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54434912 18 +  91889043 AATGCTTAATGTAGCAGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1829877 18 +   3943991 AACCCTcagggtggtatg
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I

a score=310976.000000
s hg38.chr15_KI270850v1_alt    363392 32 +    430880 ct-gg----a-aaaatcaa-cagctttagatgactgac-a
s panTro5.chr15              63516799 32 +  83230942 CT-GG----A-AAAGTCAA-CAGCTTTAGATGACTGAC-A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473886 32 +  99763055 CT-GG----A-AAAGTCAA-CAGCTTTAGATGACTGAC-A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74074 32 -   1709092 CT-GG----A-AAAATCAA-CAGCTTTAGATGACTGAC-A
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233528 33 - 121039945 CT-GG----A-AAAATCAA-CGGCTTTAGATGACTGACAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914135 32 + 169600520 CT-GG----A-AAAATCAA-CAGCTTTAGACGACTGAC-A
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440882 32 - 171882078 CT-GG----A-AAAATCAA-CAGCTTTAGACGACTGAC-A
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        54250 32 -   2311642 tt-gg----a-aaaatcaa-cagctttagacaactgac-a
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        49822 32 -   1987038 ct-gg----a-aaaatcaa-cagctttagacgactgac-a
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21130102 32 -  24206276 CT-GG----A-AAAATCAA-CAGCTTTAGACGACTGAC-A
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52917 32 -   1397330 ct-gg----a-aaaatcaa-cagctttagacgactgac-a
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        68705 32 -   1784207 CT-GG----A-AAAATCAA-CAGCTTTAGACGACTGAC-A
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50502459 26 +  54856640 ct-ga----a-aaa-------aactttagacgactaac-a
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       645467 29 -   2910086 ct-aa----a-aaaat----cagctttagacgactaac-a
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40673077 32 +  42888418 gt-ga----a-aaaatcaa-cagctttagacaaccaac-a
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113296134 37 + 116334831 ct-gggaaaa-aaaatcaagtagctttagaagtctcat-a
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        41129 37 +     80520 cc-gggaaaa-aaaatcaagtagctttaaaagtttcat-a
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             658020 38 -  36342412 ctggggaaaa-aaaatcaagtagctttagaagcctcac-a
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54434930 34 +  91889043 CT-GGGA--A-AAATTGAA-TAGCTTTAAAAGTCTGAT-A
i canFam3.chr3              C 0 I 3378
s dasNov3.JH570731            1829895 34 +   3943991 ct-gg----agaaaatcatgtaactttgaaaatcagct-a
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I

a score=1292821.000000
s hg38.chr15_KI270850v1_alt    363424 114 +    430880 gaccttgctctgctcaccaggtctgccactgtgt----------------------ctttctgagaatc-ttttcttct-ttaaagatgcaacagtagccatcttttaggtgttttgtgaggattaaagaaaataTTT
s panTro5.chr15              63516831 114 +  83230942 GACCTTGCTCTGCTCACCAGGTCTgccactgtgt----------------------ctttctgagcatc-ttttcttct-ttaaagatgcaacagtagccatcttttaggtgttttgtgaggattaaagaaaataTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80473918 114 +  99763055 GACCTTGCTCTGCTCACCAGGTCTGCCACTGTGT----------------------CTTTCTGAGCATC-TTTTCTTCT-TTAAAGATGCAACAGTAGCCATCTTTTAGGTGTTTTCTGAGGATTAAAGAAAATATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74106 114 -   1709092 GACCTTGCTCTGCTCACCAGGTCTGCCACTGTGT----------------------CTTTCTGAGCATC-TTTTCTTCT-TTAAAGATGCAACAGTAGCCATCTTTTAGGTGTTTTTTGAGGATTAAAGAAAATATTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233561 112 - 121039945 GACCTTGCTCTGCTCACCAGGTCTGCCAC--TGT----------------------ctttctgagcatc-ttttcttct-ttaaagatgcaacagtagccatcttttaggtgttttgtgaggattaaagaaaataTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914167 114 + 169600520 GACCTTGCTCTGCTCACCAGGTCTgccactgtgt----------------------ctttctgagcatt-gtttcttct-ttagagatgcaacactagccaccttttaggtgttttgtgaggattaaagaaaataTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108440914 114 - 171882078 GACCTTGCTCTGCTCACCAGGTCTACCACTGTGT----------------------ctttctgagcatt-gtttcttct-ttagagatgcaacactagccaccttttaggtgttttgtgaggattaaagaaaataTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        54282 114 -   2311642 gaccttgctctgctcaccaggtctgccactgtgt----------------------ctttctgagcatt-gtttcttct-ttagagatgcaacactagccaccttttaggtgttttgtgaggattaaagaaaataTCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        49854 114 -   1987038 gaccttgctctgctcaccaggtctgccactgtgt----------------------ctttctgagcatt-gtttcttct-ttagagatgcaacactagccaccttttaggtgttttgtgaggattaaagaaaataTCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21130134 114 -  24206276 CACCTTGCTCTGCTCACCAGGTCTGCCACTGTGT----------------------CTTTCTGAGCATT-GTTTCTTCT-TTAGAGACGCAACACTAGCCACCTTTTAGGTGTTTTGTGAGGATTAAAGAAAATATCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        52949 114 -   1397330 gaccttgctctgctcaccaggtctgccactgtgt----------------------ctttctgagcatt-gtttcttct-ttagagatgcaacactagccaccttttaggtgttttgtgaggattaaagaaaataTCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        68737 114 -   1784207 GACCTTGCTCTGCTCACCAGGTCTgccactgtgt----------------------ctttctgagcatc-gtttcttct-ttaaagacgcaacactagccaccttttaggtgttttgtgaggattaaagaaaataTCT
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50502485 126 +  54856640 gaccttgctctgctcactaggtctgccactgtgtccttctgagca----------tctttctgagcatt-tttcatctt-tttaagaggcaacagtagctaccttttaggcattttgtgaggattaaagaaaataCTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       645496 126 -   2910086 aaccttgctgtgctcactaggtctgccactgcgtccttctgagca----------cctttctgagcatt-tttcatctt-tttaagaggtaacagtagctaccttttaggcattttgtgaagattaaagaaaatacat
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40673109 126 +  42888418 gaccttgctctgctcactaggtctgccactgtgtccttctgagca----------ccttcctgagcatt-tttcatctt-tttaagaggcaacagtagctacgttttaggcattttgtgaggattaaagaaaataCTT
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113296171 132 + 116334831 gaccttgctctgctcaccaggtctgccactgtgtgatctcagtcaag----ttagcctttctgagcatc-ttttcatcc-ataaagtggcaacagcagctacttttcaagtgtttggtgaggatttaaaaaagcattt
i micMur3.chr9              C 0 C 0
s proCoq1.NW_012142813v1        41166 136 +     80520 gaccttgttctgctcaccaggtctgccattgtgtaatctcagtcaagtaacttagcctttctgagcatc-ttctcatcc-ataaagtggcaacagcagctacttttcaagtgtttggtgaagattaaaaaaagcattt
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             658058 126 -  36342412 gactttgcttcactcaccaggtctgctgttgtatgatctcagccaagttatttagtctttctgagcatctttttcatac-ataaagcagcaacaacagctccctttcaagtgttttgtaaagat-----------tTT
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH570731            1829929 137 +   3943991 gactgcgctttgctccccagatatgccactgtgtgatctcaaacaagttactcagcctttctgagtctc-ttttcatctatctaagtggcaaaagcagtcagtttacaggtgttttgtaaggattaagtaaagcattt
i dasNov3.JH570731          C 0 I 17148
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e canFam3.chr3               54434964 3378 +  91889043 I

a score=1214148.000000
s hg38.chr15_KI270850v1_alt    363538 100 +    430880 GAggccaggtgcagtggctcaagtctgtaatcccagcactttgggaggctgaggcaggcagatcgcttgaggtcaggagctcaagaccagtctggccaac
s panTro5.chr15              63516945 100 +  83230942 GAggccaggtgcagtggctcaagtctgtaatcccagcactttgggaggccgaggcaggcagatcgcttgaggtcaggagttcaagaccagtctggccaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80474032 100 +  99763055 GAggccaggtgcagtggctcaagtctgtaatcccagcactttgggaggccgaggcaggcagatcgcttgaggtcaggagttcaagaccagtctggccaac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74220 100 -   1709092 GAggccaggtgcagtgtctcaagtctgtaatcccagcactttgggaggccgaggcaggcagatcacttgagatcaggagttcaagaccagtctggccaac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233673 100 - 121039945 GAggccaggtgcagtggctcaagtctgtaatcccagcactgtgggaggccgaggcaggcagatcacttgaggtcaggagttcaagaccagtctggccaac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914281 100 + 169600520 GAggccaggtgtggtggctcatgtctgtaataccagcaatttgggaggccaaggcaggcagatcacttgaggtcaagagttcaagaccagtctggccaac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108441028 100 - 171882078 GAggccaggtgtggtggctcatgtctgtaataccagcaatttgggaggccaaggcaggcagatcacttgaggtcaagagttcaagaccagtctggccaac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        54396 100 -   2311642 GAggccaggtgtggtggctcatgtctgtaataccagcaatttgggaggccaaggcaggcagatcacttgaggtcaagagttcaagaccagtctggccaac
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        49968 100 -   1987038 GAggccaggtgtggtggctcatgtctgtaataccagcaatttgggaggccaaggcaggcagatcacttgaggtcaagagttcaagaccagtctggccaac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21130248 100 -  24206276 GAggccaggtgtggtggctcatgtctgtaataccagcaatttgggaggccaaggcaggcagatcacttgaggtcaagagttgaagaccagtctggccaac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        53063 100 -   1397330 GAggccaggtgtggtggctcatgtctgtaataccagcaatttgggaggccaaggcaggcagatcacttgaggtcaagagttcaagaccagtctggccaac
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        68851 100 -   1784207 GAggccaggtgtggtggctcatgtctgtaataccagcaatttgggaggccaaggcaggcagatcacttgaggtcaggagttcaagaccagtctggccaac
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50502611  99 +  54856640 GAggccaggcatggcggctca-gtctgtaatcccagcacttcgggaggctgaagtgagcagatcacttaaggtcaggagttcgagaccagtctgggcaac
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       645622 100 -   2910086 gAggccaggcatggtggctcacgtctgtaatcccagcacttcgggaggctgaggtgggcagatcacttgaggtcaggagttcgagaccagtctggccaac
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40673235 100 +  42888418 GAggccaggtatggtggctcacgtctgtaatcccagcacttcgggaggctgaggtgggcagatcacttgaggtcaggagttcgagaccagtctggccaac
i aotNan1.NW_018505940v1    C 0 C 0
s micMur3.chr9              113296303 100 + 116334831 caggccaggtgtagtggctcacacctgtaatcccagcactttgggaggctgaggcgggacgatcacttgaggccaggaatttgagaccagcctgggcaac
i micMur3.chr9              C 0 N 0
s proCoq1.NW_012142813v1        41302 100 +     80520 gagaccaggcataatggctcacgcctgtaatcccagcactttgggaggctgaggtgggaagatcgcttgaggccaggagtttgagaccagcctgggcaac
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             658184 100 -  36342412 GAggccaagcacagtggcttatgcctataatcccagcacttcgggaggccaaggcaggaagatcacttgaggccaggggtgcgagaccagcctgggtaac
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54434964 3378 +  91889043 I

a score=1128196.000000
s hg38.chr15_KI270850v1_alt    363638 116 +    430880 gtggtgaaaacctgtctctactaaaaatacaaaaaacattagccaggcacagtggcacacgcctgcagtcccagctacttaggaggctgaggcaggagaattgcttgagcccagga
s panTro5.chr15              63517045 116 +  83230942 gtggtgaaaacctgtcgctactaaaaatacaaaaaacattagccaggcacagtggcacacgcctgcagtcccggctacttaggaggctgaggcaggagaattgcttgagcccagga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80474132 116 +  99763055 gtggtgaaaacctgtctctactaaaaatacaaaaaacattagccaggcacagtggcacacgcctgcagtcccggctacttaggaggctgaggcaggagaattgcttgagcccagga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74320 116 -   1709092 gtggtgaaaacctgtctctactaaaaatacaaaaaacattagccaggcacagtggcacacgcctgcagtcccagctacttaggaggctgacgcaggagaattgcttgagcccggga
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233773 116 - 121039945 atggtgaaaccctgtctctactaaaaatataaaaaacattagccaggcatggtggcacatgcctgcagccccagctacttaggagactgaggcaggagaattgcttgagcccagga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914381 114 + 169600520 atggtgaaa--ctgtctctactaaaaatacaaaaaacattagccaggcacggtggcacacactggcagtcccagctacttgggaggctgaggcagaagaattgcttgagcccggga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108441128 114 - 171882078 atggtgaaa--ctgtctctactaaaaatacaaaaaacattagccaggcacggtggcacacactggcagtcccaactacttgggaggctgaggcagaagaattgcttgagcccggga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        54496 114 -   2311642 atggtgaaa--ctgtctctactaaaaatacaaaaaacattagccaggcacggtggcacacactggcagtcccagctacttgggaggctgaggcagaagaattgcttgagcccggga
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        50068 114 -   1987038 atggtgaaa--ctgtctctactaaaaatacaaaaaacattagccaggcacggtggcacacactggcagtcccagctacttgggaggctgaggcagaagaattgcttgagcccggga
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21130348 114 -  24206276 atggtgaaa--ctgtctctactaaaaatacaaaaaacactagccaggcacagtggcacacgctggcagtcccagctacttgggaggctgaggcagaagaattgcttgagcccggga
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        53163 114 -   1397330 atggtgaaa--ctgtctctactaaaaatacaaaaaacattagccaggcacggtggcacacactggcagtcccagctacttgggaggctgaggcagaagaattgcttgagcccggga
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        68951 114 -   1784207 atggtgaaa--ctgtctctactaaaaatacaaaaaacattagctaggcacagtggcacacgccggcagtcccagctacttgggaagctgaggcagaagaattgcttgagcctggga
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50502710 115 +  54856640 atggtaaaacctcatctctactaaaaatacaaaaaacattaggtgggcatgg-ggcacaggcctgtagtcccagctgctcgggaggctgaggcaggagaattgcttgggcctggga
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       645722 115 -   2910086 atagtaaaacctcatctctaccaaaaatacaaaaaacattagcggggcatgg-ggcacaggcctgtagtcccagctactcgggagggtgaggcaggagaattgcttgggcctggga
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40673335 115 +  42888418 atgataaaacctcatctctactaaaaatacaaaaaacattaggtgagcatgg-ggcacaggcctgtagtcccagctacttgggagggtgaggcaggagaattgcttgggcctggga
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        41402 116 +     80520 ataatgagaccccatctctataaaaaaattttaaaaaattagctgggtatggtggtatgtgcctgtagtcccagctacttgagaggctgaggcaggaggatggcttgagcccagga
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             658284 116 -  36342412 ataatgagaccccatttctattaagtaatttaaaaaaactagctgggcatgatggcaggcacctgtagtcctacctactcaggaggctgaggcaggaggatcacttgagcccagga
i otoGar3.GL873530          C 0 I 4629
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54434964 3378 +  91889043 I

a score=32624.000000
s hg38.chr15_KI270850v1_alt    363754 7 +    430880 aggggag----
s panTro5.chr15              63517161 7 +  83230942 aggggag----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80474248 7 +  99763055 aggaaag----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74436 7 -   1709092 aggggag----
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233889 7 - 121039945 aggggag----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914495 7 + 169600520 gggggag----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108441242 7 - 171882078 gggggag----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        54610 7 -   2311642 gtgggag----
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        50182 7 -   1987038 cggggag----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21130462 7 -  24206276 cggggaa----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        53277 7 -   1397330 cggggag----
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        69065 7 -   1784207 tggggag----
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50502825 7 +  54856640 ggcggag----
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       645837 7 -   2910086 ggcggag----
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40673450 7 +  42888418 ggtggag----
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        41518 5 +     80520 ------gtttg
i proCoq1.NW_012142813v1    C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54434964 3378 +  91889043 I
e otoGar3.GL873530             658400 4629 -  36342412 I

a score=484168.000000
s hg38.chr15_KI270850v1_alt    363761 48 +    430880 aggttgcagtgagccaagatcgtgccactgcactccagcctgggcaac
s panTro5.chr15              63517168 48 +  83230942 aggttgcagtgagccgagatcgtgccactgcactccagcctgggcaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80474255 48 +  99763055 aggttgcagtgagccgagatcgtgccactgcactccagcctgggcaac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74443 48 -   1709092 aggttgcagtgagccgagatcgtgccactgcactccagcctgggcaac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233896 48 - 121039945 aggttgcagtgagccgagatcgtgccactgcactccagcctgggcaac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914502 48 + 169600520 aggttgcaatgagccgagattgtgccactgcactccagcctgagcaac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108441249 48 - 171882078 aggttgcaatgagccgagattgtgccactgcactccagcctgagcaac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        54617 48 -   2311642 aggttgcaatgagccgagattgtgccactgcactccagcctgagcaac
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        50189 48 -   1987038 aggttgtaatgagccgagattgtgccactgcactccagcctgagcaac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21130469 48 -  24206276 aggttgcaatgagccgagattgtgccactgcactccagcctgagcaac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        53284 48 -   1397330 aggttgcaatgagccgagattgtgccactgcactccagcctgagcaac
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        69072 48 -   1784207 aggttgcaatgagccgagattgtgccactgcactccagcctgagcgac
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50502832 40 +  54856640 aggttg--------caagatcatgccactgcactccagcctgggtgac
i saiBol1.JH378108          C 0 I 42
s cebCap1.NW_016107610v1       645844 48 -   2910086 aggttgcagtgaaccaagatcatgccactgcactccagcctgggtgac
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40673457 48 +  42888418 aggttgcagtgaaccaagatcatgtcactgcactccagcctgggtgac
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        41523 48 +     80520 aggttgcagtgagctatcatcaggccactgcactctagccttggcaac
i proCoq1.NW_012142813v1    C 0 C 0
s otoGar3.GL873530             663029 45 -  36342412 agattgctgtgagctgtgat---gccatggcactcttccgagggtgac
i otoGar3.GL873530          I 4629 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54434964 3378 +  91889043 I

a score=99233.000000
s hg38.chr15_KI270850v1_alt    363809 10 +    430880 agagctagac
s panTro5.chr15              63517216 10 +  83230942 agagctagac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80474303 10 +  99763055 agagctaaac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74491 10 -   1709092 agagctagac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233944 10 - 121039945 agagctagac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914550 10 + 169600520 agagctagac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108441297 10 - 171882078 agagctagac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        54665 10 -   2311642 agagctagac
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        50237 10 -   1987038 agagctagac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21130517 10 -  24206276 agagctagac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        53332 10 -   1397330 agagctagac
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        69120 10 -   1784207 agagctagac
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107610v1       645892 10 -   2910086 aaagctagac
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40673505 10 +  42888418 aaagctagac
i aotNan1.NW_018505940v1    C 0 C 0
s proCoq1.NW_012142813v1        41571 10 +     80520 agagccagac
i proCoq1.NW_012142813v1    C 0 N 0
s otoGar3.GL873530             663074 10 -  36342412 atagtgagac
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54434964 3378 +  91889043 I
e saiBol1.JH378108           50502872 42 +  54856640 I

a score=68713.000000
s hg38.chr15_KI270850v1_alt    363819 8 +    430880 tcggtctc
s panTro5.chr15              63517226 8 +  83230942 tcggtctc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80474313 8 +  99763055 tcggtctc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74501 8 -   1709092 tcggtctc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233954 8 - 121039945 tcggtctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914560 8 + 169600520 tcggtctc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108441307 8 - 171882078 tcggtctc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        54675 8 -   2311642 tcggtctc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        50247 8 -   1987038 tcggtctc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21130527 8 -  24206276 ttggtctc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        53342 8 -   1397330 tcggtctc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        69130 8 -   1784207 ttggtctc
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107610v1       645902 8 -   2910086 tcagtcgc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40673515 8 +  42888418 tcagtctc
i aotNan1.NW_018505940v1    C 0 I 1
s otoGar3.GL873530             663084 8 -  36342412 tctgtctc
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54434964 3378 +  91889043 I
e saiBol1.JH378108           50502872 42 +  54856640 I

a score=70054.000000
s hg38.chr15_KI270850v1_alt    363827 18 +    430880 aaaaaaaaa-----aaaaaaaaa
s panTro5.chr15              63517234 22 +  83230942 aaaaaaaaa-aaacaaaaaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80474321 18 +  99763055 aaaaaaaaa-----aacaaaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74509  9 -   1709092 aaaaaaaaa--------------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233962  9 - 121039945 aaaaaaaaa--------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914568 17 + 169600520 aaaaaaaaa------aaaaaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108441315 15 - 171882078 --aaaaaaa------aaaaaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        54683 17 -   2311642 aaaaaaaaa------aaaaaaaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        50255 17 -   1987038 aaaaaaaaa------aaaaaaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21130535 15 -  24206276 --aaaaaaa------aaaaaaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        53350 16 -   1397330 -aaaaaaaa------aaaaaaaa
i manLeu1.NW_012106908v1    C 0 C 0
s saiBol1.JH378108           50502914 17 +  54856640 aggaaggaa------ggaaggaa
i saiBol1.JH378108          I 42 I 1
s cebCap1.NW_016107610v1       645910 17 -   2910086 aaaaaagaa------aaagaaaa
i cebCap1.NW_016107610v1    C 0 I 203
s aotNan1.NW_018505940v1     40673524 17 +  42888418 aaaaaaaaa------aaaaagaa
i aotNan1.NW_018505940v1    I 1 C 0
s otoGar3.GL873530             663092 23 -  36342412 caaaaaatatatgtaaaataaaa
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54434964 3378 +  91889043 I
e colAng1.NW_012117110v1        69138  0 -   1784207 C

a score=-15382.000000
s hg38.chr15_KI270850v1_alt    363845 3 +    430880 a--aa--
s panTro5.chr15              63517256 3 +  83230942 c--aa--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80474339 1 +  99763055 c------
i panPan2.chr15             C 0 C 0
s rheMac8.chr7               60914585 5 + 169600520 gaaaa--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108441330 3 - 171882078 g--aa--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        54700 3 -   2311642 g--aa--
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        50272 3 -   1987038 g--aa--
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21130550 3 -  24206276 g--aa--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        53366 3 -   1397330 g--aa--
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        69138 3 -   1784207 a--aa--
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50502932 2 +  54856640 ---ga--
i saiBol1.JH378108          I 1 I 1
s aotNan1.NW_018505940v1     40673541 3 +  42888418 --aga--
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             663115 3 -  36342412 ----ata
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54434964 3378 +  91889043 I
e cebCap1.NW_016107610v1       645927 203 -   2910086 I
e nomLeu3.chr6               17233971 0 - 121039945 C
e gorGor5.CYUI01015556v1        74518 0 -   1709092 C

a score=8217.000000
s hg38.chr15_KI270850v1_alt    363848  2 +    430880 ----------aa
s panTro5.chr15              63517259  2 +  83230942 ----------aa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80474340  2 +  99763055 ----------aa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74518  1 -   1709092 -----------a
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233971  2 - 121039945 ----------aa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914590  2 + 169600520 ----------aa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108441333  2 - 171882078 ----------aa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        54703  2 -   2311642 ----------aa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        50275  2 -   1987038 ----------aa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21130553  2 -  24206276 ----------aa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        53369  2 -   1397330 ----------aa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        69141  2 -   1784207 ----------aa
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50502935  2 +  54856640 ----------gA
i saiBol1.JH378108          I 1 C 0
s cebCap1.NW_016107610v1       646130  2 -   2910086 ----------AA
i cebCap1.NW_016107610v1    I 203 C 0
s aotNan1.NW_018505940v1     40673544  2 +  42888418 ----------aa
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             663118 12 -  36342412 aataaataataa
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54434964 3378 +  91889043 I

a score=563982.000000
s hg38.chr15_KI270850v1_alt    363850 53 +    430880 aaaaa-------------------------aTCATAAACCATGTTCATGTACTGGAAG--------ACTCAACAGCGCTAAAAA-GT
s panTro5.chr15              63517261 53 +  83230942 aaaaa-------------------------ATCATAAAccatgttcatgtactggaag--------actcaacagtgctaaaaa-gt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80474342 53 +  99763055 aaaaa-------------------------aTCATAAAccatgttcatgtactggaag--------actcaacagtgctaaaaa-gt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74519 61 -   1709092 aaaaa-------------------------aTCATAAACCATGTTCACGTACTGGAAGACTCAAAAACTCAACAGTGCTAAAAA-GT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17233973 53 - 121039945 aaaaa-------------------------aTCATAAACTATGTTCATGTACTGGAAG--------ACTCAACAGTGCTAAAAA-GT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914592 53 + 169600520 aaaaa-------------------------aTCATAAAccatgttcatgtactggaag--------actcaacagtgctagaaa-gt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108441335 53 - 171882078 aaaaa-------------------------aTCataaaccatgttcatgtactggaag--------actcaacagtgctaaaaa-gt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        54705 53 -   2311642 aagaa-------------------------aTCATAAAccatgttcatgtactggaag--------actcaacagtgctaaaaa-gt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        50277 53 -   1987038 aaaaa-------------------------aTCataaaccatgttcatgtactggaag--------actcaacagtgctaaaaa-gt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21130555 53 -  24206276 aaaaa-------------------------aTCataaaccatgttcatgtactggaag--------actcaacagtgctaaaaa-gt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        53371 53 -   1397330 aaaaa-------------------------aTCataaaccatgttcatgtactggaag--------actcaacagtgctaaaaa-gt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        69143 53 -   1784207 aaaaa-------------------------aTCATAAACCATGTTCATGTACTGGAAG--------ACTCAACAGTGCTAAAAA-GT
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50502937 53 +  54856640 AGAAA-------------------------ATCATAAAccatgttcatgtactggaag--------actcaatagtgctaaaaa-gt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       646132 53 -   2910086 Agaaa-------------------------atcataaaccatgttcatgtactggaag--------actcgatagtgctaaaaa-tt
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40673546 53 +  42888418 agaaa-------------------------aTCATAAAccatgttcatgtactggaag--------actcaatagtgctaaaaa-gt
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             663130 79 -  36342412 ataaatattaaCATGTTGAGGTTTTAAAACATCATATACCATGTTCTTATACTAAAAG--------ATTTAACATTGCTAAAAAGGC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54438342 53 +  91889043 AAAAT-------------------------GTCATATACCATGTTCATATACTGAAAG--------ATTAAATATTGTCAAAAA-GT
i canFam3.chr3              I 3378 I 22
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I

a score=940226.000000
s hg38.chr15_KI270850v1_alt    363903 103 +    430880 GATACCCACAAAATTAATATAcagatgttcctcaac-tacagtgggg---ttatggtctgataaacccattgtaagttgaaaatattataaacggaaaatgcattta
s panTro5.chr15              63517314 106 +  83230942 gatacccacaaaattaatatacagatgttcctcaac-tacagtggggttattatggtctgataaacccattgtaagttgaaaatattataaacggaaaatgcattta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80474395 106 +  99763055 gatacccacaaaattaatatacagatgttcctcaac-tacagtggggttattatggtctgataaacccattgtaagttgaaaatattataaacggaaaatgcattta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74580 103 -   1709092 GATACCCACAAAATTAATATAcagatgttcctcaac-tacagtgggg---ttatggtctgataaacccattgtaagttgaaaatattataaatggaaaatgcattta
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17234026 103 - 121039945 GATACCCACAAAATTAACATAcagatgttcctcaac-aacagtgggg---ttatggtctgataaacccactgtaagttgaaaatattataaattgaaaatgcattta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914645 103 + 169600520 gatacccgcaaaattaatatacagatgttcctcaac-tacagtgggg---ttatggtctgataaacccattgtaaattgaaaatattataaattgaaaatgcattta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108441388 103 - 171882078 gatacccgcaaaattaatatacagatgttcctcaac-tacagtgggg---ttatggtctgataaacccattgtaaattgaaaatattataaattgaaaatgcattta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        54758 103 -   2311642 gatacccgcaaaattaatatacagatgttcctcaac-tacagtgggg---ttatggtctgataaacccattgtaaattgaaaatattataaattgaaaatgcattta
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        50330 103 -   1987038 gatacccgcaaaattaatatacagatgttcctcaac-tacagtgggg---ttatggtctgataaacccattgtaaattgaaaatattataaattgaaaatgcattta
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21130608 103 -  24206276 gatacccgcaaaattaatatacagaggttcctcaac-tacagtgggg---ttatggtctgataaacccattgtaaattgaaaatattatgaattgaaaatgcattta
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        53424 103 -   1397330 gatacccgcaaaattaatatacagatgttcctcaac-tacagtgggg---ttatggtctgataaacccattgtaaattgaaaatattataaattgaaaatgcattta
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        69196  99 -   1784207 GATACCCGCAA----AATATGcagatgttcctcaac-tacagtgggg---ttatggtctgataaacccattgtaaattgaaaatattataaattgaaaatgcattta
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50502990 103 +  54856640 gatacccactaaattaatatacagatgtttctcaac-tacagtgggg---ttatggtctgacaaacccattttaagttgaaaacactgtaaattgaaaatgcattta
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       646185 103 -   2910086 gatacctactaaattaatatacagatgttcctcaac-tacagtgcgg---ttatggtctgacaagcccattgtaagttgaaaacactgtaaattgaaaatgcattta
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40673599 103 +  42888418 gataaccactaaattaatatacagatgttcctcaac-tacagtgggg---ttatggtctgacaagcccattgtaagttgaaaacactgtaaattgaaaatgcattta
i aotNan1.NW_018505940v1    C 0 I 293
s otoGar3.GL873530             663209  83 -  36342412 TATTCCTTCCAAATTAATACAcagatattccttgacttacaatggag---ttatgttctg-----------gtacattgaaaacagcagaagt--------catt--
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438395  22 +  91889043 I

a score=611064.000000
s hg38.chr15_KI270850v1_alt    364006 75 +    430880 aatacatctaatttactgcacattatagcttagcctagcataccttaac---tgtgctcagaaaactgacactagcct
s panTro5.chr15              63517420 75 +  83230942 aatacatctaatttactgcacattatagcttagcctagcataccttaac---tgtgctcagaaaactgacactagcct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80474501 75 +  99763055 aatacatctaatttactgcacattatagcttagcctagcataccttaac---tgtgctcagaaaactgacactagcct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74683 75 -   1709092 aatacatctaatttgctgcacattatagcttagcctagcataccttaac---tgtgctcagaaaactgacactagcct
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17234129 75 - 121039945 aatacatctaatttactgcacattatagcttagcctagcacaccttaac---tgtgctcagaaaactgacagtagcct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914748 75 + 169600520 aatacatctaatttactgcacattatagcttagcctagcctaccataac---cgtgctcagaaaactgacactagcct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108441491 75 - 171882078 aatacatctaatttactgcacattatagcttagcctagcctaccataac---cgtgctcagaaaactgacactagcct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        54861 75 -   2311642 aatacatctaatttactgcacattatagcttagcctagcctaccataac---cgtgctcagaaaactgacactagcct
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        50433 75 -   1987038 aatacatctaatttactgcacattatagcttagcctagcctaccataac---cgtgctcagaaaactgacactagcct
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21130711 75 -  24206276 aatacatctaatttactgcacattatagcttagcctagcctaccttaac---cgtgctcagaaaactgacactagcct
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        53527 75 -   1397330 aatacatctaatttactgcacattatagcttagcctagcctaccataac---cgtgctcagaaaactgacactagcct
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        69295 75 -   1784207 aatacatctaatttactgcacattatagcttagcctagcctaccttaac---tgtgctcagaaaactgacactagcct
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50503093 65 +  54856640 aatacatctaat----------ttatagcttagcctagcctaccttaac---tgtgctcagaaaactgtcactagcct
i saiBol1.JH378108          C 0 I 130
s cebCap1.NW_016107610v1       646288 65 -   2910086 aatacatctaat----------ctatagctatgcctagcttaccttaac---tgtgctcagaaaactgtcactagctt
i cebCap1.NW_016107610v1    C 0 C 0
s otoGar3.GL873530             663292 78 -  36342412 aatactcctaacctactgaacatcatagcttagcctactctactttaataaatgtgctcagaacatttacattagctt
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1     40673702 293 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438395 22 +  91889043 I

a score=15678.000000
s hg38.chr15_KI270850v1_alt    364081 2 +    430880 ac
s panTro5.chr15              63517495 2 +  83230942 ac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80474576 2 +  99763055 ac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74758 2 -   1709092 ac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17234204 2 - 121039945 ac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914823 2 + 169600520 ac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108441566 2 - 171882078 ac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        54936 2 -   2311642 ac
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        50508 2 -   1987038 ac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21130786 2 -  24206276 ac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        53602 2 -   1397330 ac
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        69370 2 -   1784207 ac
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107610v1       646353 2 -   2910086 ac
i cebCap1.NW_016107610v1    C 0 C 0
s otoGar3.GL873530             663370 2 -  36342412 at
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1     40673702 293 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438395 22 +  91889043 I
e saiBol1.JH378108           50503158 130 +  54856640 I

a score=644271.000000
s hg38.chr15_KI270850v1_alt    364083 82 +    430880 agtagggcaaaataatttaacacaaaacttgttttataataaagtgatgaacacctcatgtaatttattgaatactgtaatg
s panTro5.chr15              63517497 82 +  83230942 agtagggcaaaataatttaacacaaaacttgctttataataaagtgataaacacctcatgtaatttattgaatactgtaatg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80474578 82 +  99763055 agtagggcaaaataatttaacacaaaacttgttttataataaagtgataaacacctcatgtaatttattgaatactgtaatg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74760 82 -   1709092 agtagggcaaaataatttaacacaaaacttgttttataataaagtgatgaacacctcatgtaatttattgaatactgtaatg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17234206 82 - 121039945 agtagggcaaaataatttaacacaaaacttgttttataataaagtgatgaacacctcatgtaatttattgaatactgtaatg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914825 82 + 169600520 agtaggacaaaataatttaacacaaaacctgtattataataaagtgatgaacacctcatgtaatttattgaataccgtaatg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108441568 82 - 171882078 agtaggacaaaataatttaacacaaaacctgtattataataaagtgatgaacacctcatgtaatttattgaataccgtaatg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        54938 82 -   2311642 agtaggacaaaataatttaacacaaaacctgtattataataaagtgatgaacacctcatgtaatttattgaataccgtaatg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        50510 82 -   1987038 agtaggacaaaataatttaacacaaaacctgtattataataaagtgatgaacacctcatgtaatttattgaaaaccgtaatg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21130788 82 -  24206276 agtagggcaaaataatttaacacaaaacctgtattataatgaagtgatgaacacctcatgtaatttattgaataccgtaatg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        53604 82 -   1397330 agtaggacaaaataatttaacacaaaatctgtattataataaagtgatgaacacctcatgtaatttattgaataccgtaatg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        69372 82 -   1784207 agtagggcaaaataatttaacacaaaacctgtattataataaagtgatgaatatctcatgtaatttattgaatactgtaatg
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50503288 82 +  54856640 agttgggcaaaatcatttaacagaaaacctgttttataataaagtgatgaacatctcatgtaatttattgaatactgtaatg
i saiBol1.JH378108          I 130 C 0
s cebCap1.NW_016107610v1       646355 82 -   2910086 agttgggcaaaatcatttaacagaaaatctgttttataataaagtgataagtatctcatgtaatttactgaatactgtaatg
i cebCap1.NW_016107610v1    C 0 C 0
s otoGar3.GL873530             663372 50 -  36342412 agttggacaaaatcttctaacacaaagccta------aataaagtgcc--------------------------ctgaagtg
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1     40673702 293 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438395 22 +  91889043 I

a score=458519.000000
s hg38.chr15_KI270850v1_alt    364165 57 +    430880 aaaat-aaaaacagaaaggtcgtatggatactc--aaagtacaatttcaactgaatgcgt
s panTro5.chr15              63517579 57 +  83230942 aaaat-aaaaacagaaaggtcgtatggataatc--aaggtacaatttcaactgaatgcgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80474660 57 +  99763055 aaaat-aaaaacagaaaggtcgtatggataatc--aaggtacaatttcaactgaatgcgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74842 57 -   1709092 aaaat-aaaaacagaaaggtcgtatggatactc--aaagtacaatttcaactgaatgcat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17234288 57 - 121039945 aaaat-aaaaacaggaaggtcatatggatactc--aaagtacagttgcaactgaatgcat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914907 57 + 169600520 aaaat-aaaaacagaaaggtcgtatggatactc--aaagtacagtttcaaccgaatgtgt
i rheMac8.chr7              C 0 I 2
s macFas5.chr7              108441650 57 - 171882078 aaaat-aaaaacagaaaggtcgtatggatactc--aaagtacagtttcaactgaatgtgt
i macFas5.chr7              C 0 I 2
s macNem1.NW_012011945v1        55020 57 -   2311642 aaaat-aaaaacagaaaggtcgtatggatactc--aaagtacagtttcaactgaacgtgt
i macNem1.NW_012011945v1    C 0 I 2
s cerAty1.NW_012002657v1        50592 57 -   1987038 aaaat-aaaaacagaaaggtcgtatggatactc--aaagtacagtttcaactgaatgtgt
i cerAty1.NW_012002657v1    C 0 I 13
s chlSab2.chr29              21130870 57 -  24206276 aaaat-aaaaacagaaaggtcgtatggatactc--aaagtacagtttcaactgaatgtgt
i chlSab2.chr29             C 0 I 2
s manLeu1.NW_012106908v1        53686 57 -   1397330 aaaat-aaaaacagaaaggtcgtatggatactc--aaagtacagtttcaactgaatgtgt
i manLeu1.NW_012106908v1    C 0 I 13
s colAng1.NW_012117110v1        69454 57 -   1784207 aaaat-aaaaacagaaaggtcatatggatattc--aaagtacagtttcaactgaatgcgt
i colAng1.NW_012117110v1    C 0 I 2
s saiBol1.JH378108           50503370 60 +  54856640 aaaatgaaaaccagaatggttatatggatactcaaaaagtacagtttcaactgaatgcat
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       646437 58 -   2910086 aaaatgaaaaacagaatggttatatagatactc--aaagtacagtttcaactgaatgcgt
i cebCap1.NW_016107610v1    C 0 C 0
s otoGar3.GL873530             663422 52 -  36342412 ------agaaatagaatggtcatatgggtactc--aaagcacaagttctactgaatgcct
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54438417 31 +  91889043 aaaaa-aaaaaaaaaaaaGTTG-ATAGCTATCC---------------------------
i canFam3.chr3              I 22 C 0
e aotNan1.NW_018505940v1     40673702 293 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I

a score=18452.000000
s hg38.chr15_KI270850v1_alt    364222 8 +    430880 at-catttt
s panTro5.chr15              63517636 8 +  83230942 at-catttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80474717 8 +  99763055 at-catttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74899 8 -   1709092 at-catttt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17234345 8 - 121039945 at-catttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914966 9 + 169600520 atatgcatt
i rheMac8.chr7              I 2 C 0
s macFas5.chr7              108441709 9 - 171882078 atatgcatt
i macFas5.chr7              I 2 C 0
s macNem1.NW_012011945v1        55079 9 -   2311642 atatgcatt
i macNem1.NW_012011945v1    I 2 C 0
s chlSab2.chr29              21130929 9 -  24206276 atacgcatt
i chlSab2.chr29             I 2 C 0
s colAng1.NW_012117110v1        69513 9 -   1784207 atacgcatt
i colAng1.NW_012117110v1    I 2 C 0
s saiBol1.JH378108           50503430 8 +  54856640 at-cacttt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       646495 8 -   2910086 at-cacttt
i cebCap1.NW_016107610v1    C 0 C 0
s otoGar3.GL873530             663474 8 -  36342412 at-cacCtt
i otoGar3.GL873530          C 0 I 3636
e aotNan1.NW_018505940v1     40673702 293 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438448 0 +  91889043 C
e manLeu1.NW_012106908v1        53743 13 -   1397330 I
e cerAty1.NW_012002657v1        50649 13 -   1987038 I

a score=30470.000000
s hg38.chr15_KI270850v1_alt    364230 5 +    430880 cacac
s panTro5.chr15              63517644 5 +  83230942 cacac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80474725 5 +  99763055 cacac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74907 5 -   1709092 cacac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17234353 5 - 121039945 cacac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914975 5 + 169600520 cacac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108441718 5 - 171882078 cacac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        55088 5 -   2311642 cacac
i macNem1.NW_012011945v1    C 0 C 0
s chlSab2.chr29              21130938 5 -  24206276 cacac
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        69522 5 -   1784207 cacac
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50503438 5 +  54856640 cgcac
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       646503 5 -   2910086 cacac
i cebCap1.NW_016107610v1    C 0 C 0
e aotNan1.NW_018505940v1     40673702 293 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438448 0 +  91889043 C
e otoGar3.GL873530             663482 3636 -  36342412 I
e manLeu1.NW_012106908v1        53743 13 -   1397330 I
e cerAty1.NW_012002657v1        50649 13 -   1987038 I

a score=825538.000000
s hg38.chr15_KI270850v1_alt    364235 111 +    430880 catcatcatgtc-aaaaaccaaagttgaaccaacctaagtctggggccatctgCACATCTGTGTAATCCC---AATATA-CCAGACTTAAAgcaattcattggggaaaaacttttt
s panTro5.chr15              63517649 111 +  83230942 catcatcatgtc-aaaaacctaagttgaaccatcctaagtctggggccatctgcacatctgtgtaatccc---aatATA-CCAGACTTAAAgcaattcattggggaaaaacttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80474730 111 +  99763055 catcatcatgtc-aaaaacctaagttgaaccatcctaagtctggggccatctgcacatctgtgtaatccc---aatATA-CCAGACTTAAAgcaattcattggggaaaaacttttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        74912 111 -   1709092 catcatcatgtc-aaaaacctaagttgaaccatcctaagtctggggccatctgCACATCTGTGTAATCCC---AATATA-CCAGACTTAAAgcaattcattggggaaaaacttttt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17234358 107 - 121039945 catcatcatgtcaaaaaacctaagttgaaccatcctaagtctgggaccatctgCACATCTGTGTAATCTC---AATATA-CCAGACTT-----aattcactggggaaaaacttttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60914980 112 + 169600520 catcatcatgtcaaaaaacctaagttgaaccatcctaagtctgggaccatctgcacattggtgtaatccc---aatATA-CCAGACTTACAgcaattcactggggaaaagcttttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108441723 112 - 171882078 catcatcatgtcaaaaaacctaagttgaaccatcctaagtctgggaccatctgcacattggtgtaatccc---aatata-ccagacttacagcaattcattggggaaaagcttttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        55093 112 -   2311642 catcaccatgtcaaaaaacctaagttgaaccatcctaagtctgggaccatctgcacattggtgtaatccc---aatATA-CCAGACTTACAgcaattcattggggaaaagcttttt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        50662 112 -   1987038 caccatcatgtcaaaaaacctaagttgaaccatcctaagtctgggaccatctgcacatcggtgtaatccc---aatata-ccagacttacagcaattcattggggaaaagcttttt
i cerAty1.NW_012002657v1    I 13 C 0
s chlSab2.chr29              21130943 112 -  24206276 catcatcatgtcaaaaaacctaagttgaaccatcctaagtctgggaccatatgcatatcggtgtaatccc---aatATA-CCAGACTTACAgcaattcattggggaaaagcttttt
i chlSab2.chr29             C 0 I 2560
s manLeu1.NW_012106908v1        53756 112 -   1397330 caccatcatgtcaaaaaacctaagttgaaccatcctaagtctgggaccatctgcacatcggtgtaatccc---aatata-ccagacttacagcaattcattggggaaaagtttttt
i manLeu1.NW_012106908v1    I 13 C 0
s colAng1.NW_012117110v1        69527 112 -   1784207 catcatcatgtcaaaaaacctaagttgaaccatcctaagtctgggaccatctgCACATCGGTGTAATCCC---AATATA-CCAGACTTAAAgcaattcattggggaaaagcttttt
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50503443 108 +  54856640 catcatcatgtcaaaaaacatacactgaa-catcctaagtctgggaccatctgCACA---GAGTAATCCC---AATATA-CCAGACTTCGAacaattcattagggaaaaccttttt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       646508 109 -   2910086 catcatcatgtcaaaaaacatacattgaaccatcctaagtctgggaccatctgcaca---gtgtaatccc---aatata-ccaGACTTCAAgcaattcattggggaaaaccttttt
i cebCap1.NW_016107610v1    C 0 C 0
s canFam3.chr3               54438448  88 +  91889043 -----------------ACCAAAG------CAATCCACAT----GGTCA-ATACAAGTCAATACAAGCCCAATAATATATCTGGTCTTCAAgtaattcagtggagaaagacccttt
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018505940v1     40673702 293 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e otoGar3.GL873530             663482 3636 -  36342412 I

a score=1362120.000000
s hg38.chr15_KI270850v1_alt    364346 218 +    430880 aacaaatggcactggaa-cacca------tatggggaggagggaataaactctgac-------------ctatatacaaacattaatttagtagatatcagagacgt--aaaagtgaaagctaagtataaactacaaagcctctctaagaacc-------tatctttgtaacttggtaggggaggggg--agtacatagaagcaagggtttctttatgtagagtacagaaagcaatgatcatggagaaa
s panTro5.chr15              63517760 217 +  83230942 aacaaatggcactggaa-cacca------tat-gggaggagggaataaactctgac-------------ctatatacaaacattaatttagtagatatcagagacgt--aaaagtgaaagctaagtataaactacaaagcctctctaagaacc-------tatctttgtaacttggtaggggagaggg--agtacatagaagcaagggtttctttatgtagagtacagaaagcaatgattatggagaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80474841 217 +  99763055 aacaaatggcactggaa-cacca------tat-gggaggagggaataaactctgac-------------ctatatacaaacattaatttagtagatatcagagacgt--aaaagtgaaagctaagtataaactacaaagcctctctaagaacc-------tatctttgtaacttggtaggggagaggg--agtacatagaagcaagggtttctttatgtagagtacagaaagcaatgattatggagaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        75023 218 -   1709092 aacaaatggcgctggaa-cacca------tatggggaggagggaataaactctgac-------------ctatatacaaacattaatttagtagatatcagagacgt--aaaagtgaaagctaagtataaactacaaagcctctctaagaacc-------tatctttgtaacttggtagggaagaggg--agtgcatagaagcaagggtttctttatgtagagtacagaaagcaatgatcatggagaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17234465 214 - 121039945 aataaatggcactggaa-cacca------tatggggaggagggaataaactctgac-------------ctatatacaaacattaatttagtagatatcagagacgt--aaaagtgaaagctaagtataaactataaagcttctctaagaacc-------tatctttgtaacttggtaggggagaggg--agtgcatagaagcaaggg----tttatgtagagtacagaaagcaatgatcatggagaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60915092 213 + 169600520 aacaaatggtgctgaaa-cacca------tatggggaggagggaataaactctgac-------------ctatacacaaac-ttaatttagtagatatcagagacat--aaaagtgaaaactaaatataaactataaagcttctctaaga-----------agctttatgacttggtaggggagagag--aatgcatagaaacaaggatttctttatgtagagtacagaaagcaatgatcatggagaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108441835 213 - 171882078 aacaaatggtgctgaaa-cacca------tatggggaggagggaataaactctgac-------------ctatacacaaac-ttaatttagtagatatcagagacat--aaaagtgaaaactaaatataaactataaagcttctctaaga-----------agctttatgacttggtaggggagagag--aatgcatagaaacaaggatttctttatgtagagtacagaaagcaatgatcatggagaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        55205 213 -   2311642 aacaaatggtgctgaaa-cacca------tatggggaggagggaataaactctgac-------------ctatacacaaac-ttaatttagtagatatcagagacat--aaaagtgaaaactaaatataaactataaaacttctctaaga-----------agctttatgacttggtaggggagagag--agtgcatagaaacaaggatttctttatgtagagtacagaaagcaatgatcatggagaaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        50774 217 -   1987038 aacaaacggtgctgaaa-cacca------tatggggaggagggaataaactctgac-------------ctatacacaaac-ttaatttagtagatatcagagacat--aaaagtgaaaactaaatataaactataaagcttctctaagaacc-------tatctttatgacttggtaggggagaggg--agtgcatagaaacaaggatttctttatgtagagtacagaaagcaatgatcatggagaaa
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012106908v1        53868 217 -   1397330 aacaaatggtgctgaaa-cacca------tatggggaggagggaataaactctgac-------------ctatacacaaac-ttaatttagtagatatcagagacat--gaaagtgaaaactaaatataaactataaagcttctctaagaacc-------tatctttatgacttggtaggggagaggg--agtgcatagaaacaaggatttctttatgtagagtacagaaagcaatgatcatggagaaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        69639 217 -   1784207 aacaaatggtgctgaaa-cacca------tatgggaaggagggtataaactctgac-------------ctatatacaaac-ttaatttagtagatatcagagacat--agaagtgaaaactaagtataaactataaagcttctctaagaacc-------tatctttatgacttggtagaggagaggg--agtgcatagaaacaaggatttctttatgtagagtacagaaagcaatgatcatggagaaa
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50503551 209 +  54856640 -taaaatgttgctggaa-cacca------catggggaggagggaataaactctaac-------------ctatatacaaacattaatttaataggtatctgagac----------aatacctaagtat-aactataaagcttctctaagaaTT--------ATTTTTGTAATTTGGTAGAGGAGAGAGGAAGTGCACAGAAAcaaggttttctttatgtagagcacagaaaacaatgatcacgaagaaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       646617 217 -   2910086 -aaaaatgttgctggaa-cacca------tatggggaggagggaatacactctgac-------------ctatatacaaacattaatttaataggtatctgagacct--aaaagtgaaagctaagtgt-aactatatagcttctctaagaatt--------atctttgtaacttagtagaggaaagaggatgtgcatagaagcaagagtttctttatgtagagcacagaaaacaatcatcacgaagaaa
i cebCap1.NW_016107610v1    C 0 C 0
s canFam3.chr3               54438536 224 +  91889043 aacacacagtactggaaccaccacagatccacagggagaa--aaataaatcttgaccccgtacctcacaccatatacaagcattaaatcaatatggatcagaggctttaaaaagttaaaac---------------aagcttctctaagaaactataaactatctttgtgacttggggtgggag---g--agtgcacaga--cgaaggtttc-ctatggaggatacagaaagcaatgatcattagaaaa
i canFam3.chr3              C 0 I 3361
e aotNan1.NW_018505940v1     40673702 293 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e otoGar3.GL873530             663482 3636 -  36342412 I
e chlSab2.chr29              21131055 2560 -  24206276 I

a score=1269987.000000
s hg38.chr15_KI270850v1_alt    364564 212 +    430880 gttgataagctgaccttatcacaacgaaaaacttctgctcatcaagataccactaagaaaataattacgcaagccacaatatgtgagaaaatacccacaaccatatctgacaaatcagtaaaagaaatcttaactgaaaag-taacgaaatctcaattgttaaaaggcacaaaatctgaaaagcacttcacaaggattatataaatggccaat
s panTro5.chr15              63517977 212 +  83230942 gttgataagctgaccttatcacaacgaaaaacttctgctcatcaagataccactaaaaaaataattacacaagccacaatatgtgagaaaatacccacaaccatatctgacaaatcagtaaaagaaatcttaactgaaaag-taacaaaatctcaattgttaaaaggcacaaaatctgaaaagcacttcacaaggattatataaatggccaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80475058 212 +  99763055 gttgataagctgaccttatcacaacgaaaaacttctgctcatcaagataccactaaaaaaataattacacaagccacaatatgtgagaaaatacccacaaccatatctgacaaatcagtaaaagaaatcttaactgaaaag-taacaaaatctcaattgttaaaaggcacaaaatctgaaaagcacttcacaaggattatataaatggccaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        75241 212 -   1709092 gttgataagctgaccttatcacaacgaaaaacttctgctcatcaagataccactaagaaaataattacgcaagccacaatatgtgagaaaatacccacaaccatacctgacaaatcagtaaaagaaatcttaactgaaaag-taacaaaatctcaattgttaaaaggcacaaaatctgaaaagcacttcacaaggattatataaatggccaat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17234679 213 - 121039945 attggtaagctgaccttatcacaacaaaaaacttctgctcatcaagataccactaagaaaataattgggcaagccacaatatgtgagaaaatacgcacaatcgtatctgacaaatcagtaaaagaaatcttaattgaaaagttaacaaaatctcaattgttaaaaggcacaaaatctgaaaagcacttcacgaggattatataaatggccaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60915305 208 + 169600520 gttgataagctgaccttatcacaataaaaaacttctgctcatcaagataccattaagaaaa----taagcaagccacaaactatgagaaaatatccacaaccatatctgacaaatcagtaaaagacatcttaactgagaag-taacaaaatctcaattgttaaaagtcacaaaatctgaaaagcacttcacaaggattatataaatggccaat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108442048 208 - 171882078 gttgataagctgaccttatcacaataaaaaacttctgctcatcaagataccattaagaaaa----taagcaagccacaaactatgagaaaatatccacaaccatatctgacaaatcagtaaaagacatcttaactgagaag-taacaaaatctcaattgttaaaagtcacaaaatctgaaaagcacttcacaaggattatataaatggccaat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        55418 208 -   2311642 gttgataagctgaccttatcacaataaaaaacttctgctcatcaagataccattaagaaaa----taagcaagccacaaactatgagaaaatatccacaaccatatctgacaaatcagtaaaagacatcttaactgagaag-taacaaaatctcaattgttaaaagtcacaaaatctgaaaagcacttcacaaggattatataaatggccaat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        50991 208 -   1987038 gttgataagctgaccttatcacaataaaaaacttctgctcatcaagataccattaagaaaa----taagcaagccacaaactatgagaaaatatccacaaccatatctgacaaatcagtaaaagaaatcttaactgaaaag-taacaaaatctcaattgttaaaagtcacaaaatctgaaaagcacttcacaaggattatataaatggccaat
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012106908v1        54085 208 -   1397330 gttgataagctgaccttatcacaataaaaaacttctgctcatcaagataccattaagaaaa----taagcaagccacaaactatgagaaaatatccacaaccatatctgacaaatcagtaaaagaaatcttaactgaaaag-taacaaaatctcaattgttaaaagtcacaaaatctgaaaagcacttcacaaggattatataaatggccaat
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        69856 201 -   1784207 gttgataagctgatcttaccacaataaaaaac-tctgctcatcaagataccattaagaaaataattaagcaagccacaaactatgagaaaatatccacaaccatatctgacaaatcagtaa---------tcactgaaaag-taacaaaatctcaattgttaaaagtcacaaaatctgaaaagcacttcacaagtattatataaat-gccaat
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50503760 208 +  54856640 gttgataagctgaacttaccaaaatcaaaaactt---cttctcaagacaccattaagaaaataatcaggcaagcaagaaaatgtgaggaaatacccacgaatgtatctgacaaatcattaa-agaaatcttaactgtaaag-taacaaagtcccaattgttaaaaggcacaaaatctgaaaagcatttcaaaaagattctataaatggcaaat
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       646834 208 -   2910086 gtttataagctgaatttaccaaaatcaaaaactt---ctcatcaagacaccattaagaaaataattaggcaagccagaaaatgtgagaaaatacccacgaatgtatctgacaaatcattaa-agaaatcttaactgaaaag-taacaaagtcccaattgttaaaagacacaaaatctgaaaagcatttcaaaaagattatataaatggccaat
i cebCap1.NW_016107610v1    C 0 C 0
e aotNan1.NW_018505940v1     40673702 293 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e otoGar3.GL873530             663482 3636 -  36342412 I
e chlSab2.chr29              21131055 2560 -  24206276 I

a score=6330846.000000
s hg38.chr15_KI270850v1_alt    364776 867 +    430880 aagaacttcaaaaagtgctcaaaatcattagtcaaagaaatccaagttaaaaccacagtgagacactactgcacacctactagatggctaaaatttaaaagactgtaccacatcttgccaacatttgatgttgtcaatcaaagcttcattaccgtaaatggtacatccaccttgtacttatgaaaacgcttatatattttcttccttttcaatgggagaaaaggtacatccactttgaaaaatggtctgcccatttcttacacaact-aacacatattatcttatgacccagaaattctactcctaggaattcaactaagaggagtaaaagtgtatgtctaataaaacacctgtgcaagaatagtcatagcagctttattcataatcacccaaacgtggattcagtccatgtgagaatcaacagaacaaaatgtagtacatgcatataccatactattattcagcaataaaaaggaa--taatacaggcaacaata-------------agataattatggtgagtggaaaaagccgtacataagttacatatgtatataattccacttatttgaatttttagagcagacaaaactaataaatggtgaaaaaaatcaggtggttgcctctggcaggaagtaggcaggtagattaggaaggggtacaaggaaagtagctgaggtgatgctaacagtgtgtatattttgatgagagtgaggatacatcagtcagaatggatctaatgacacatttagaatttgtgctcttcactgcatataaattttacctcaaaaaagttataaacaaatatagtattgaatactagttaatgatatgcatggtgaaggattttggggtaaactgtagcaatgtctacaattt---------------------------------------------------------------a
s panTro5.chr15              63518189 867 +  83230942 aagaacttcaaaaagtgctcaacatcattagtcaaagaaatccaagttaaaaccacagtgagacactactgcacacctactagatggctaaaatttaaaagactgtaccacatcttgccaacatttgatgttgtcaatcaaagcttcgttaccgtaaatggtacatccaccttgtacttatgaaaacgcttatatatgttcttccttttcaatgggagaaaaggtacatccactttgaaaaatggtctgcccatttcttacacaact-aacacatattatcttatgacccagaaattctactcctaggaattcaactaagaggagtaaaagtgtatgtctaataaaacacctgtgcaagaatagtcatagcagctttattcataatcacccaaacgtggattcagtccatgtgagaatcaacagaacaaaatgtagtacatgcatataccatactattattcagcaataaaaaggaa--taatacaggcaacaata-------------agataattatggtgagtggaaaaagccgttcataagttacatatgtatataattccacttatttgaatttttagagcagacaaaactaataaatggtgaaaaaaatcaggtggttgcctctggcaggaagtaggcaggtagattaggaaggggtacaaggaaagtagctgaggtgatgctaacagtgtgtatattttgatgagagtgaggatacatcagtcagaatggatctaatgacacatttagaatttgtgctcctcactgcatataaattttacctcaaaaaagttataaacaaatatagtattgaatactagttaatgatatgcatggtgaaggattttggggtaaactgtagcaatgtctacaattt---------------------------------------------------------------a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80475270 867 +  99763055 aagaacttcaaaaagtgctcaacatcattagtcaaagaaatccaagttaaaaccacagtgagacactactgcacacctactagatggctaaaatttaaaagactgtaccacatcttgccgacatttgatgttgtcaatcaaagcttcgttaccgtaaatggtacatccaccttgtacttatgaaaacgcttatatatgttcttccttttcaatgggagaaaaggtacatccactttgaaaaatggtctgcccatttcttacacaact-aacacatattatcttatgacccagaaattctactcctaggaattcaactaagaggagtaaaagtgtatgtctaataaaacacctgtgcaagaatagtcatagcagctttattcataatcacccaaacgtggattcagtccatgtgagaatcaacagaacaaaatgtagtacatgcatataccatactattattcagcaataaaaaggaa--taatacaggcaacaata-------------agataattatggtgagtggaaaaagccgttcataagttacatatgtatataattccacttatttgaatttttagagcagacaaaactaataaatggtgaaaaaaatcaggtggttgcctctggcaggaagtaggcaggtagattaggaaggggtacaaggaaagtagctgaggtgatgctaacagtgtgtatattttgatgagagtgaggatacatcagtcagaacggatctaatgacacatttagaatttgtgctcctcactgcatataaattttacctcaaaaaagttataaacaaatatagtattgaatactagttaatgatatgcatggtgaaggattttggggtaaactgtagcaatgtctacaattt---------------------------------------------------------------a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        75453 865 -   1709092 aagaacttcaaaaagtgctcaacatcattagtcaaagaaatccaagttaaaaccacagtgagacactactgcacacctactacatggctaaaatttaaaacactgtaccacatcttgccaacatttgatgttgtcaatcaaagcttcattaccgtaaatggtacatccaccttgtacttatgaaaatgcttatatattttcttccttttcaatgggagaaaaggtacatccactttgaaaaatggtctgcccatttcttacacaact-aacacatattatcttatgacccagaaattctactcctaggaattcaactaagaggagtaaaagtgtatgtctaatacaacacctgtgcaagaatagtcatagcagctttattcataatcacccaaacatggattcagtccatgtgagaatcaacagaacaaaatgtagtacatgcatataccatactattattcagcaataaaaaggaa--taatacaggcaacaata-------------agataattatggtgagtggaaaaagccgtacataagttacatatgtatataattccacttatttgaatttttagagcagacaaaactaataaatggtgaaaaaaatcaggtggttgcctctggcaggaagtaggcgggtagattaggaa-gggtacaaggaaagtagctgaggtgatactaacagtgtgtatattttgatgagagtaaggatacatcagtcacaatggatctaatgacacatttagaatttgtgctcttcactgcatataaattttacctcaaaaaagttataaacaaatatagtattgaatactagttaatgatatgcatggtgaagga-tttggggtaaactgtagcaatgtctacaattt---------------------------------------------------------------a
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17234892 862 - 121039945 aagaacttcaaaaagtgctcaacatcattagtcaaagaaatccaagttgaaaccacagtgagacactactgcacacctactagatggctaaaattaaaaagactgtaccacatgttgccaacattcgatgttgtcaatcaaagcttcattactataaatggtacatccaccttgtacttatgaaaacgcttatatattttcttcctcttcaatgggagaaaagatacgtccatgttgaaaaatggtctgcccatttcttacacaagt-aacacatattatcctatgacccagaaattctactcttaggaattcaactaagaggagtaaaagtgtatgtctaataagacacctgtgcaagaatagttagagcagctttattcataatcacccaaacgtggattcagtccatgtgagaatcaacagaacaaaatgtagtacatgcatataccatactattactcagcaataaaaaggaa--caatacaggcaaca------------------attattatggtgagtgaaaaaagccgtacataagttacatatgtatataattccacttatttgaatttttagaacagatgaaactaataaatggtgaaaaaaatcaggtggttgcctctggcaggaagcaggggggtagattaggaaggggtacaaggaaagtagctgagatgatgctaacagtgtgtatattttgatgagagtggggatacatcagtcagaatggatctaatgacacatttagaatttgtgcacttcactgcatataaattttacctcaaaaaagttataaacaaatataatattgaatactagttaatgatatgcatgctgaaggattttggggtaaattgtaccaatgtctacaattt---------------------------------------------------------------a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60915513 921 + 169600520 aagaacttcaaaaagtgctcaacatcattagtcaaagaaatccaagttaaaaccacagtgagacactactgcacacctactagatggctaaaatt--aaagactgtaccacatcttgccaacatttgatgttg----tcaaagcttcattaccataaatggtacatccacctggtacttatgaaaacacttatatattttcttccttttcaatgggagaaaaggtatatccactttgaaaaatggtctgcccatttcttacacaactaaacacatattatcctatgatccagaaattctactcctaggaattcaactaagaggagtaaaagtgtatgtctaataaaacacctgtgcaagaatagtaatagcaactttattcataatcaaccaaacctggattcagtccatgtgagaatcaacagaacaaaatgtagtacatgcatataccataccattactcagcaataaaaagg-a--taatacaggcaacg----------------agataattgtggtgagtgaaaaacgccgtacataaattacatatgtatataattccacttatttgaatttttagaacagacaaaactaataaatggtgaaaaaaatcaggtggttgcctctggcagaaagcaagggggtagattaggaaggggtacaagggaagtagctgaggtgatgctaacagtgtgtctattttgatgagagtggggatacatcagtcagaatggatctaatgacacatttcgaatttgtgcacttcactgcatataaagtttacctcaaaaaagttataaacaaatatagtattgaatactagttaatgatatgcatgctgaaggattttggggtaaactgtaccaatgtctacaatttactttgaaacaaatcgtaaaaataagatgtaatggttaagtggttagggggctaaataaatgaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108442256 921 - 171882078 aagaacttcaaaaagtgctcaacatcattagtcaaagaaatccaagttaaaaccacagtgagacactactgcacacctactagatggctaaaatt--aaagactgtaccacatcttgccaacatttgatgttg----tcaaagcttcattaccataaatggtacatccacctggtacttatgaaaacacttatatattttcttccttttcaatgggagaaaaggtatatccactttgaaaaatggtctgcccatttcttacacaactaaacacatattatcctacgatccagaaattctactcctaggaattcaactaagaggagtaaaagtgtatgtctaataaaacacctgtgcaagaatagtaatagcaactttattcataatcaaccaaacctggattcagtccatgtgagaatcaacagaacaaaatgtagtacatgcatataccataccattactcagcaataaaaagg-a--taatacaggcaaca----------------agataattgtggtgagtgaaaaacgtcgtacataaattacatatgtatataattccacttatttgaatttttagaacagacaaaactaataaatggtgaaaaaaatcaggtggttgcctctggcagaaagcaagggggtagattaggaaggggtacaagggaagtagctgaggtgatgctaacagtgtgtctattttgacgagagtggggatacatcagtcagaatggatctaatgacacatttcgaatttgtgcacttcactgcatataaagtttacctcaaaaaagttataaacaaatatagtattgaatactagttaatgatatgcatgctgaaggattttggggtaaactgtaccaatgtctacaatttactttgaaacaaatcgtaaaaataagatgtaatggttaagtggttagggggctaaataaatgaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        55626 921 -   2311642 aagaacttc-aaaagtgctcaacatcattagtcaaagaaatccaagttaaaaccacagtgagacactactgcacacctactagatggctaaaatt--aaagactgtaccacatcttgccaacatttgatgttg----tcaaagcttcattaccataaatggtacatccacctggtacttatgaaaacacttatatattttcttccttttcaatgggagaaaaggtatatccactttgaaaaatggtctgcccatttcttacacaactaaacacatattatcctacgatccagaaattctactcctaggaattcaactaagaggagtaaaagtgtatgtctaataaaacacctgtgcaagaatagtaatagcaactttattcataatcaaccaaacctggattcagtccatgtgagaatcaacagaacaaaatgtagtacatgcatataccataccattactcagcaataaaaaggaa--taatacaggcaaca----------------agataattgtggtgagtgaaaaacgccgtacataaattacatatgtatataattccacttatttgaatttttagaacagacaaaactaataaatggtgaaaaaaatcaggtggttgcctctggcagaaagcaagggggtagattaggaaggggtacaagggaagtagctgaggtgatgctaacagtgtgtctattttgatgagagtggggatacatcagtcagaatggatctaatgacacatttcgaatttgtgcacttcactgcatataaagtttacctcaaaaaagttataaacaaatatagtattgaatactagttaatgatatgcatgctgaaggattttggggtaaactgtaccaatgtctacaatttactttgaaacaaatcgtaaaaataagatgtaatggttaagtggttagggggctaaataaatgaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        51199 922 -   1987038 aagaacttcaaaaagcgctcaacatcattagtcaaagaaatccaagttaaaaccacagtgagacactactgcacacctactagatggctaaaatt--aaagactgtaccacatcttgccaacatttgatgttg----tcaaagctacattaccataaatggtacatccacctggtacttatgaaaacacttatatattttcttccttttcaatgggagaaaaggtacatccactttgaaaaatggtctgcccatttcttacacaactaaacacatattatcctacgatccagaaattctactcctaggaattcaactaagaggagtaaaagtgtatgtctaataaaacacctgtgcaagaatagtaatagcaactttattcataatcaaccaaacctggattcagtccatgtgagaatcaacagaacaaaatgtagtacatgcatataccataccattactcagcaataaaaaggaa--taatacaggcaaca----------------agataattgtggtgagtgaaaaacgccatacataaattacatgtgtatataattccacttttttgaatttttagaacagacaaaactaataaatggtgaaaaaaatcagttggttgcctctggcagaaagcaagggggtagattaggaaggggtacaagggaagtagctgaggtgatgctaacagtgtgtctattttgatgagagtggcgatacatcagtcagaatggatctcatgacacatttcgaatttgtgcacttcactgcatataaagtttacctcaaaaaagttataaacaaatatagtattgaatactagttaatgatatgcatgctgaaggattttggggtaaactgtaccaatgtctacaatttactttgaaacaaatcgtaaaaataagatgtaatggttaagtggttagggggctaaataaatgaa
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012106908v1        54293 922 -   1397330 aagaacttcaaaaagcgctcaacatcattagtcaaagaaatccaagttaaaaccacagtgagacactactgcacacctactagatggctaaaatt--aaagactgtaccacatcttgccaacatttgatgttg----tcaaagctacattaccataaatggtacatccacctggtacttatgaaaacacttatatattttcttccttttcaatgggagaaaaggtacatccactttgaaaaatggtctgcccatttcttacacaactaaacacatattatcctatgatccagaaattctactcctaggaattcaactaagaggagtaaaagtgtatgtctaataaaacacctgtgcaagaatagtaatagcaactttattcataatcaaccaaacctggattcagtccatgtgagaatcaacagaacaaaatgtagtacatgcatataccataccattactcagcaataaaaaggaa--taatacaggcaaca----------------agataattgtggtgagagaaaaacgccatacataaattacatgtgtatataattccacttatttgaatttttagaacagacaaaactaataaatggtgaaaaaaatcaggtggttgcctctggcagaaagcaagggggtagattaggaaggggtacaagggaagtagctgaggtgatgctaacagtgtgtctattttgatgagagtggcgatacatcagtcagaatggatctaatgacacatttcgaatttgtgcacttcactgcatataaagtttacctcaaaaaagttataaacaaatatagtattgaatactagttaatgatatgcatgctgaaggattttggggtaaactgtaccaatgtctacaatttactttgaaacaaatcgtaaaaataagatgtaatggttaagtggttagggggctaaataaatgaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        70057 922 -   1784207 aagaacttcaaaaagtgctcaacatcattagtcaaagaaatccaagttaaaaccacagtgagacactactgcacacctactagatggctaaaatt--aaagactctaccacatcttgctaacatttgatgttg----tcaaagcttcattaccataaatggtacatccacctggtacttatgaaaacacttatatattttcttccttttcaatgggagaaaaggtacatctactttgaaaaatggtctgcccatttcttacacaactaaacacatattatcctacgatccagaaattctactcctaggaattcaactaagaggagtaaaagtgtatgtctaataaaacaccggtgcaagaataataatagcaactttattcataattacccaaacctggattcagtccatgtgagaatcaacagaacaaaatgtagtacatgcatataccataccattactcagcaataaaaaggaa--taatacaggcaaca----------------agataattatggtgagtggaaaacgccgtacataaattacatatgtatataattccacttatttgaatttttagaacagacaaaactaataaatggtgaaaaaaatcaggtggttgcctgtggcagaaagcaggggggtagattaggaaggggtacaagggaagtagctgaggtgatgctaacagtgtatctattttgatgagagtggggacacatcagtcagaatggatctaatgacacatttagaatttgtgcacttcactgcatatcaagtttacctcaaaaaagttataaacaaatatactattgaatactagttaatgatatgcatgctgaaggattctggggtaaactgtgccaatgtctacaatttactttgaaacaaatagtaaaaataagatgtaacggttaagtggttagggggctaaataaatgaa
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50503968 851 +  54856640 aagaacttcaaaaattgctcgacatcattagtcaaagaaatccaagttaaaaccatagtgagatactactgcacaactactaggtggctaaaattaaagagactgtaccacatcttgccaacatttgatatca---atcaaagcttcattaccgtaaatggtacatctaccttgtacctatgaaatctcttatatattttcttccttttcaatgcaagaaatggtacattcactttgagaataggtttgcccatttcttaaacaactaaacacatattatcctatgatctggaaattatactcctaggaattcaactaaaaggaataaaagtc--tgtctataaaaacacctgtgcaagcatactaatagcagctttattcataatcgctcaaacctggattcagtccatgtgagaatcaacagaacaaaatgtggtatatgcatataccatactattactcagcaataaaaaggaaactgatacaggcaacaatatggttaaatct-----taattaaggtgagtgaaaaaagtcatacataagttacgtatgtatgtaattccacttatttcaatttttagaatagacaaaactaatatatggtgaaaaaaatcaggtggttccctctggcaggaagcagcagggtagattaggaaggggtacaagggaacgagctgaggtgacgctaacag--------ttttgatgagagtggggatacatcagtcagaatggatctaatgacacatttaggatttgtggactttactgcatataagttttacctc-aaaaagttataaacaactg-------------tagttaacaatatgcatgttgaaggattttgaggtaaactgtaccaatgtccacaattt---------------------------------------------------------------a
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       647042 856 -   2910086 aagaacttcaaaaattgctcgacatcgttagtcaaagaaatctaagttaaaaccacagtgagacactactgcacaactactaggtggctaaaattaaaaagactgtaccacatcctgccaacatttgatgtca---atcaaagcttcattaccgtaaatggtacatccaccttgtacctatgaaaactcttatatattttcttccttttcaatggaagaaaaggtacattcactctgagaataggtctgcccatttcttaaacaactaaacacatattatcctatgatctgaaaattatactcctaggaattcaactaaaaggagtaaaagtcaatgtctataaaaacacctgtgcaagaatagtaatagcagctttattcataatcactcaaacctggattcagtccatgtgagaatcaacacaacaaaatgtggtatatgcatataccatactattactcagcaataaaagggaaactgatacaggcaacaatataggtaaatcttaagataattaaggtgagtgaaaaaagtcatatgtaag-tacatatgtatgtaattccacttatttcaatttttagaacagacaaaactaatatatggtgaaaaaaatcaggtggttgtctctggccggaagtagcagggtagattaggaaggggtacaa-ggaactagctgaggtgatgctaacag--------ttttgatgagagtggggatacatcagtcagaatggatctaatgacacatttaggatttgtggactttactgcatataaattttacctc-aaaaagttataaacaactg-------------tagttaacaatatgcatgctgaaggattttgaggtaaactgtactaatgtctacaattt---------------------------------------------------------------a
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40673995 857 +  42888418 aagaaCTTCaaaaattgcccgacattattagtcaaagaaatccaagttaaaaccacagtgagatactactgcacaactactaggtggctaaaattaaaaagactgtaccacatcttgccaacatttgatgtca---atcaaagcttcattaccgtaaatggtacatccaccttgtacctatgaaaactcttaaatattttcttccttttcaatggaagaaaaggtacattcactttgaaaata-gtctgcccattgcttaaataactaaacacatattatcctatgatctggaaattatactcctaggaattgaactaaaaggagtaaaagtctatgtctctaaaaacacctgtgcaagaatagtaatagcagctttattcataatcactcaaacctggattcagtccatgtgagaatcaacagaacaaaatgtgatacatgcatataccatactattactcagcaataaaaaggaaactgatacaggcaacaatatgggtgaatcttaagataattatggtgagtgaaaaaagtcatacgtaagttacatatgtacgtaattccacttatttcaatttttagaacagacaaaactaatatatggtgaaaaaaatcaggtggttgcctctggcaggaagcattggggtagattaggaaagggtacatgggaactagctgaggtgacgctaacag--------ttttgatgagagtggggatatatcagtcagaatggatctaatgacacatttaggatttgtggactttactgcatataaattttacctc-aaaaagttataaacaactg-------------tagttaacaatatgcatgctgaaggatttttaggtaaactgtaccaatgtctacaattt---------------------------------------------------------------a
i aotNan1.NW_018505940v1    I 293 I 65
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e otoGar3.GL873530             663482 3636 -  36342412 I
e chlSab2.chr29              21131055 2560 -  24206276 I

a score=-15174.000000
s hg38.chr15_KI270850v1_alt    365643  5 +    430880 -------------------------aagat----------------------------------------
s panTro5.chr15              63519056  5 +  83230942 -------------------------aagat----------------------------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80476137  5 +  99763055 -------------------------aagat----------------------------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        76318  5 -   1709092 -------------------------aagat----------------------------------------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17235754  5 - 121039945 -------------------------aagat----------------------------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60916434  5 + 169600520 -------------------------aagat----------------------------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108443177  5 - 171882078 -------------------------aagat----------------------------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        56547  5 -   2311642 -------------------------aagat----------------------------------------
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        52121  5 -   1987038 -------------------------aagat----------------------------------------
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012106908v1        55215  5 -   1397330 -------------------------aagat----------------------------------------
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        70979  5 -   1784207 -------------------------aagat----------------------------------------
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50504819 70 +  54856640 ctttaatgaagtgaattataaaagtaaaatgtactgataagtggttagggggctaactaaatgaatggag
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       647898 70 -   2910086 ctttaatgaattgaattataaaagtaaactgtactgataagtggtttgggggctaactaaatgaatggag
i cebCap1.NW_016107610v1    C 0 C 0
e aotNan1.NW_018505940v1     40674852 65 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e otoGar3.GL873530             663482 3636 -  36342412 I
e chlSab2.chr29              21131055 2560 -  24206276 I

a score=277820.000000
s hg38.chr15_KI270850v1_alt    365648 39 +    430880 atgt---------gataaggcaaatatgacaagatgttcactgttcaa
s panTro5.chr15              63519061 39 +  83230942 atgt---------gataaggcaaatatgacaagatgttcactgttcaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80476142 39 +  99763055 atgt---------gataaggcaaatatgacaagatgttcactgttcaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        76323 39 -   1709092 atgt---------gataaggcaaatatgacaagatgttcactgttcaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17235759 39 - 121039945 atga---------gataagacaaatatgacaaaacattcattgttcaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60916439 48 + 169600520 atgtgataaggcagataaggcaaatatgacaaaatgttcattgttcaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108443182 39 - 171882078 atgt---------gataaggcaaatatgacaaaatgttcattgttcaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        56552 39 -   2311642 atgt---------gataaggcaaatatgacaaaatgttcattgttcaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        52126 39 -   1987038 acgt---------gataaggcaaatatgacaaaatgttcactgttcaa
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012106908v1        55220 39 -   1397330 acgt---------gataaggcaaatacgacaaaatgttcattgttcaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        70984 39 -   1784207 atgt---------gataaggcaaatatgacaaaatgttcattgttcaa
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50504889 39 +  54856640 acgt---------ggtaaggcaaatatgataaaatgttcattgtatga
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       647968 39 -   2910086 atgt---------gataaggcaaatatggtaaaacgttcattgtataa
i cebCap1.NW_016107610v1    C 0 I 9
s aotNan1.NW_018505940v1     40674917 39 +  42888418 atgt---------gataaggcaaatatgataaaatgttcattgtataa
i aotNan1.NW_018505940v1    I 65 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e otoGar3.GL873530             663482 3636 -  36342412 I
e chlSab2.chr29              21131055 2560 -  24206276 I

a score=44931.000000
s hg38.chr15_KI270850v1_alt    365687 8 +    430880 tctaggtg
s panTro5.chr15              63519100 8 +  83230942 tctaggtg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80476181 8 +  99763055 tctaggtg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        76362 8 -   1709092 tctaggtg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17235798 8 - 121039945 tctaggtg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60916487 8 + 169600520 tctaggtg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108443221 8 - 171882078 tctaggtg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        56591 8 -   2311642 tctaggtg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        52165 8 -   1987038 tctaggtg
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012106908v1        55259 8 -   1397330 tctaggtg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        71023 8 -   1784207 tctaggtg
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50504928 3 +  54856640 -----gtg
i saiBol1.JH378108          C 0 I 5
s aotNan1.NW_018505940v1     40674956 5 +  42888418 ---gagtg
i aotNan1.NW_018505940v1    C 0 I 4
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e cebCap1.NW_016107610v1       648007 9 -   2910086 I
e otoGar3.GL873530             663482 3636 -  36342412 I
e chlSab2.chr29              21131055 2560 -  24206276 I

a score=3076170.000000
s hg38.chr15_KI270850v1_alt    365695 440 +    430880 gtattacaggtgttcactttgtaattcttttagcttttatgtatgcttgaaaatgttactaaaatgttgagaaaaaaataaagtcagactttttctgaaaaaatgaaagtctgactgaactaattgatttgacaataaaaactgactccaggctgggtgtggtggctcatacgtgtagtcccagcactttgtgaggccaacgcaggtggatagcttgagccaatgagtttgagaccagcctgggcaacatggcaaaa-ccccgtctgtaataaaaatac-aaaaaatcagccgggcatggtgggtgcacacttgtagtcacagctacttgggtggctgaggtggaaggatcgcttgagcctaggaggcagaggatgcag--tgagctgagaccacgccactgcactccagcctgggtgacagagtgagaccccgtctccaaaaa
s panTro5.chr15              63519108 440 +  83230942 gtattacaggtgttcactttgtaattcttttagcttttatgtatgcttgaaaatgttactaaaatgttgagaaaaaaataaagtcagactttttctgaaaaaatgaaagtctgactgaactaattgatttgacaataagaactgactccaggctgggtgtggtggctcacacgtgtagtcccagcactttgtgaggccaacgcaggtggatagcttgagccaatgagtttgagaccagcctgggcaacatggcaaaa-ccccatctgtaataaaaatac-aaaaaatcagccgggcatggtgggtgcacacttgtagtcacagctacttgggtggctgaggtggaaggatcgcttgagcctaggaggcggaggatgcag--tgagctgagatcatgccactgcactccagcctgggtgacagagtgagaccctgtctccaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80476189 440 +  99763055 gtattacaggtgttcactttgtaattcttttagcttttatgtatgcttgaaaatgttactaaaatgttgagaaaaaaataaagtcagactttttctgaaaaaatgaaagtctgactgaactaattgatttgacaataagaactgactccaggctgggtgtggtggctcacacgtgtagtcccagcactttgtgaggccaacgcaggtggatagcttgagccaatgagtttgagaccagcctgggcaacatggcaaaa-ccccatctgtaataaaaatac-aaaaaatcagccgggcatggtgggtgcacacttgtagtcacagctacttgggtggctgaggtggaaggattgcttgagcctaggaggcggaggatgcag--tgagctgagatcatgccactgcactccagcctgggtgacagagtgagaccctgtctccaaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        76370 440 -   1709092 gtattacaggtgttcactttgtaattcttttagcttttatgtatgcttgaaaatgttactaaaatgttgagaaaaaaataaagtcagactttttctgaaaaaatgaaagtctgactgaactaattgatttgacaataagaactgactccaggctgggtgtggtggctcatacgtgtagtcccagcactttgtgaggccaatgcaggtggatagtttgagccaatgagtttgagaccagcctgggcaacatggcaaaa-ccccatctgtaataaaaatac-aaataatcagccgggcatggtgggtgcacacctgtagtcacaactacttgggtggctgaggtggaaggatcgcttgagcctaggaggcggaggatgcag--tgagctgagatcatgccactgcactccagcctgggtgacagagtgagaccctgtctccaaaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17235806 440 - 121039945 gtattacaggtgttcactttgtaattcttttaGAttttatgtatgcttgaaaatgttaataaaatgttgagaaaaaaataaagttagactttttctgaaaaaatgaaagtctgactgaactaattggtttgacaataagaactgacttcaggctgggtgtagtggctcatacgtgtagtcccagcactttgtgaggccaacgcaggtggatagcttgagccaatgagtttgagaccagcctgggcaacatggcaaaa-ccctatctgtaataaaaatac-aaaaaatcagcaaggcatggtgggtgcgcacctctagtcacagctacttgggtggctgaggtgggaggatcgcttgagcctaggaggtggaggatgcag--tgagctgagatcatgccactgcactccagcctgggtgacagagtgagaccctgtctccaaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60916495 405 + 169600520 gcattacaggtgttcactttataattcttttagtttttctgtatgcttgaaaatgttaataaaatgttgagaaaaaaataaagtcagactttttctggaaaaa-aaaagtctgactgaactaattagtctgacaataagaactgactccaggctgggtgtggtggctcatacctgtagtcccagcactttgtgaggccaatgcaggtggacagcttgagccaatgagtttgagaccagcatgggcaacatggcaaaa-ccccatctctaataaaaatac-aaaaaattagccgggcatggt-ggtgtgcacctgtagtcacagctaattgggtggctgaggtgggaggatcacttaagcctaggag-----------------------------------gcactccagcctaggtgacagagtgagaccctgtctccaaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108443229 405 - 171882078 gcattacaggtgttcactttataattcttttagtttttctgtatgcttgaaaatgttaataaaatgttgagaaaaaaataaagtcagactttttctggaaaaa-aaaagtctgactgaactaattggtctgacaataagaactgactccaggctgggtgtggtggctcatacctgtagtcccagcactttgtgaggccaatgcaggtggacagcttgagccaatgagtttgagaccagcatgggcaacatggcaaaa-ccccatctctaataaaaatac-aaaaaattagccgggcatggt-ggtgtgcacctgtagtcacagctaattgggtggctgaggtgggaggatcacttaagcctaggag-----------------------------------gcactccagcctaggtgacagagtgagaccctgtctccaaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        56599 404 -   2311642 gcattacaggtgttcactttataattcttttagtttttctgtatgcttgaaaatgttaataaaatgttgag-aaaaaataaagtcagactttttctggaaaaa-aaaagtctgactgaactaattggtctgacaataagaactgactccaggctgggtgtggtggctcatacctgtagtcccagcactttgtgaggccaatgcaggtggacagcttgagccaatgagtttgagaccagcatgggcaacatggcaaaa-ccccatctctaataaaaatac-aaaaaattagccgggcatggt-ggtgtgcacctgtagtcacagctaattgggtggctgaggtgggaggatcacttaagcctaggag-----------------------------------gcactccagcctaggtgacagagtgagaccctgtctccaaaaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        52173 438 -   1987038 gcattacaggtgttcactttataattcttttagtttttctgtatgcttgaaaatgttaataaaatgttgagaaaaaaataaagtcagactttttctggaaaaa-aaaagtctgactgaactaattggtctgacagtaagaactgactccaggctgggtgtggtggctcatacctgtactcccagcactttgtgaggccaatgcaggtggacagcttgagccaatgagtttgagaccagcatgggcaacatggcaaaa-cgccatctctaataaaaatac-aaaaaattagccgggcatggt-ggtgtgcacctgtagtcacagctaattgggtggctgaggtgggaggatcacttaagcctaggaggcggaggatgcac--tgagctgagatcatgccactgcactccagcctaggtgacagagtgagaccctgtctccaaaaa
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012106908v1        55267 438 -   1397330 gCATTACAGGTGTTcactttataattcttttagtttttctgtatgcttgaaaatgttaataaaatgttgagaaaaaaataaagtcagactttttctggaaaaa-aaaagtctgactgaactaattggtctgacagtaagaactgactccaggctgggtgtggtggctcatacctgtagtcccagcactttgtgaggccaatgcaggtggacagcttgagccaatgagtttgagaccagcatgggcaacatggcaaaa-ccctatctctaataaaaatac-aaaaaattagccaggcatagt-ggtgtgcacctgtagtcacagctaattgggtggctgaggtgggaggatcacttaagcctaggaggcggaggatgcac--tgagctgagatcatgccactgcactccagcctaggtgacagagtgagaccctgtctccaaaaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        71031 438 -   1784207 gcattacaggtgttcactttataattcttttagtttttctgtatgcttgaaaatgttaataaaatgttgagaaaaaaataaagtcagactttctctggaaaaa-aaaagtctgactgaactaattggtctgacaataagaactgactccaggctgggtgtagcagctcatacctgtagtcccagcactttgtgaggccaacgcaggtggatagcttgagccaatgagtttgagaccagcctgggcaacatggcaaaa-ccccatctctaataaaaatac-aaaaaattagccaggcatggt-ggtgtgcacctgtagtcacagctagttgggtggctgaggtaggaggatcacttaagtctaggaggcggaggatgtag--tgagctgagatcatgccactgcactccagcctgggtgacagagtgagaccctgtctccaaaaa
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50504936 433 +  54856640 gtattataggtgttcactttatatttctttcagcttttctgtatccttgaaaatgttaataaaatgttgagaaaaaaacaaagtcagactttttctgaaa----gaaagtctggctgaactaattggtttgacaataagaactgatcccaggctgggcgt---ggctcacacctacagtcccagcactttgaaaggccaagtcagatgaacagc-taagtcaacaagttcgagacccgcctaggcaacatggcaaaacccccatctctaataaaaatacaaaaaaattagccaagcatggt-gttgtgcacctgcagt--cagctagctgggtggctgaggtgggaggattgcttgagcctaggaggcagagtatgcagactaagctgagatcacgccattgcactccagcctgggtgacagagtgagatcctgtctccaaaaa
i saiBol1.JH378108          I 5 C 0
s cebCap1.NW_016107610v1       648016 432 -   2910086 gtattacaggtgttcactttatgtttctttcagcttttctgtatgcttgaaaatattaataaaatgttgagaaaaaaataaagtcagactttttctgaaa----gaaagtctgactgaactaattggtttgacagtaagaactgaccccaggctgggtgt---ggctcacacctgtagtctcagcacttcgagaggccaactcagatggacagc-tgagccaacaagttcgagaccagcctaggctacatggcaaaacccccatctctaataaaaatac-aaaaaattagccgagcatggt-gttgtgcacctgtagt--cagccagctgggtggctgaggtgggaggatcgcttgagcctgggaggcagaatatgcagagtaagctgagattacaccactgcactccagcctgggtgacagagtgagatcctgtctccaaaaa
i cebCap1.NW_016107610v1    I 9 I 4
s aotNan1.NW_018505940v1     40674965 432 +  42888418 gtattacaggtgttcactttatatttctttcagcttttccgtatgcttgaaaatgttaataaaatgttgagaaaaaaacaaagtcagactttttctgaaa----gaaaatctgactgaactaatcggattgacaataagaactgatcccaggctgggtgt---ggctcacacctgtagtcccagcacttcgagaggtcaactcagatggacagc-tgagccaacaagttcgagaccagcctaggcaacatggcaaaacccccatctcttaaaaaaatac-aaaaaattagccgagcatggt-gttgtgcatctgtagt--cagctagctgggtggctgaggtgggaggaccgcttgagcctaggaggcagagtatgcagagtaagctgagatcatgccactgcactccagcctggatgacagagtgagatcctgtctccaaaaa
i aotNan1.NW_018505940v1    I 4 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e otoGar3.GL873530             663482 3636 -  36342412 I
e chlSab2.chr29              21131055 2560 -  24206276 I

a score=132814.000000
s hg38.chr15_KI270850v1_alt    366135 29 +    430880 cag----gactccattaaatgaggcattatagt
s panTro5.chr15              63519548 33 +  83230942 cagaactgactccattaaatgaggcattatagt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80476629 33 +  99763055 cagaactgactccattaaatgaggcattatagt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        76810 33 -   1709092 cagaactgactccattaaatgaggtattatagt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17236246 33 - 121039945 cagaactgactccattaaatgaggtattatagt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60916900 33 + 169600520 cagaactgactccattaaatgaggtattatagt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108443634 33 - 171882078 cagaactgattccattaaatgaggtattatagt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        57003 33 -   2311642 cagaactgactccattaaatgaggtattatagt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        52611 33 -   1987038 cagaactgactccattaaatgaggtattatagt
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012106908v1        55705 33 -   1397330 cagaactgactccattaaatgaggtattatagt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        71469 33 -   1784207 cagaactgactccattaaatgaggtattatagt
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50505369  4 +  54856640 ----------------aaac-------------
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40675397  3 +  42888418 -----------------aac-------------
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e cebCap1.NW_016107610v1       648448  4 -   2910086 I
e otoGar3.GL873530             663482 3636 -  36342412 I
e chlSab2.chr29              21131055 2560 -  24206276 I

a score=628989.000000
s hg38.chr15_KI270850v1_alt    366164 91 +    430880 agaaatttttttctgtaaataaagttaaatctataggcccatggctttgacaaaacatacttaaagcaaatggtaagattaaatcattttt
s panTro5.chr15              63519581 91 +  83230942 agaaatttttttctgtaaataaagttaaatctataggcccatggctttgacaaaacatacttaaagcaaatggtaagattaaatcattttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80476662 91 +  99763055 agaaatttttttctgtaaataaagttaaatctataggcccatggctttgacaaaacatacttaaagcaaatggtaagattaaatcattttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        76843 91 -   1709092 agaaatttttttctgtaaataaagttaaatctataggcccacggctttgacaaaacacacttaaagcaaatggtaagattaaatcattttt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17236279 91 - 121039945 agacatttttttctgtaaataaagttaaatctataggcccatggttttgacaaaacatacttaaagcaaatggtaagataaaatcattttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60916933 87 + 169600520 agacatttttttct----ataaagttaaatctataggtccatggttttgacaaaatatacttaaagcaaatggtaagataaaatcattttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108443667 87 - 171882078 agacattttttcct----ataaagttaaatctataggtccatggttttgacaaaatatacttaaagcaaatggtaagataaaatcattttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        57036 87 -   2311642 agacatttttttct----ataaagttaaatctataggtccatggttttgacaaaatatacttaaagcaaatggtaagataaaatcattttt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        52644 87 -   1987038 agacatttttttat----ataaagttaaagctataggtccatggttttgacaaaatatacttaaagcaaatggtaagataaaatcattttt
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012106908v1        55738 87 -   1397330 agacatttttttct----ataaagttaaagctataggtccatggttttgacaaaatatacttaaagcaaatggtaagataaaatcattttT
i manLeu1.NW_012106908v1    C 0 I 542
s colAng1.NW_012117110v1        71502 87 -   1784207 agacactttcttct----ataaagctaaatctataggtccatggttttgacaaaatatacttaaagcaaatggtaagataaaatcattttt
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50505373 91 +  54856640 agaactcattttctataaataaagttaaatctataggcccatggttttgacaaaacatacttaaagcaaatggtaaaataaaatcatttaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       648452 91 -   2910086 agaactcattttctataaataaagttaagtctataggcccatggttttgacaaaacatacttaaagcaaatggtaaaataaaatcatttaa
i cebCap1.NW_016107610v1    I 4 C 0
s aotNan1.NW_018505940v1     40675400 91 +  42888418 agaactcattttctataaataaagttaagtctataggcccgtggttttgacaaaacatacttaaagcaaatggtaaaataaaatcatttta
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e otoGar3.GL873530             663482 3636 -  36342412 I
e chlSab2.chr29              21131055 2560 -  24206276 I

a score=9555.000000
s hg38.chr15_KI270850v1_alt    366255 1 +    430880 a
s panTro5.chr15              63519672 1 +  83230942 a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80476753 1 +  99763055 a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        76934 1 -   1709092 a
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17236370 1 - 121039945 a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60917020 1 + 169600520 a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108443754 1 - 171882078 a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        57123 1 -   2311642 a
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        52731 1 -   1987038 a
i cerAty1.NW_012002657v1    C 0 I 311
s chlSab2.chr29              21133615 1 -  24206276 a
i chlSab2.chr29             I 2560 C 0
s manLeu1.NW_012106908v1        56367 1 -   1397330 a
i manLeu1.NW_012106908v1    I 542 C 0
s colAng1.NW_012117110v1        71589 1 -   1784207 a
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50505464 1 +  54856640 a
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       648543 1 -   2910086 a
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40675491 1 +  42888418 a
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e otoGar3.GL873530             663482 3636 -  36342412 I

a score=32899.000000
s hg38.chr15_KI270850v1_alt    366256 4 +    430880 aata
s panTro5.chr15              63519673 4 +  83230942 aata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80476754 4 +  99763055 aata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        76935 4 -   1709092 aata
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17236371 4 - 121039945 aata
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60917021 4 + 169600520 aata
i rheMac8.chr7              C 0 I 310
s macFas5.chr7              108443755 4 - 171882078 aata
i macFas5.chr7              C 0 I 310
s macNem1.NW_012011945v1        57124 4 -   2311642 aata
i macNem1.NW_012011945v1    C 0 I 311
s cerAty1.NW_012002657v1        53043 4 -   1987038 aata
i cerAty1.NW_012002657v1    I 311 C 0
s chlSab2.chr29              21133616 4 -  24206276 aata
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        56368 4 -   1397330 aaTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        71590 4 -   1784207 aata
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50505465 4 +  54856640 aaga
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       648544 4 -   2910086 aaga
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40675492 4 +  42888418 aata
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e otoGar3.GL873530             663482 3636 -  36342412 I

a score=449225.000000
s hg38.chr15_KI270850v1_alt    366260 51 +    430880 gcatgttggcaaaggtgtgttTTGTTTTGTTTTTGCagctgaggctatagg
s panTro5.chr15              63519677 51 +  83230942 gcatgttggcaaaggtgtgttTTGTTTTGTTTTTgcagttgaggctatagg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80476758 51 +  99763055 gcatgttggcaaaggtgtgttTTGTTTTGTTTTTgcagctgaggctacagg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        76939 51 -   1709092 gcatgttggcaaaggtgtgttTTGTTTTGTTTTTgcagctgaggctatagg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17236375 51 - 121039945 gcatgttggcaaaggtgtGCTTTGTTTTGTTTTTGCAGCTGATGCTACAGG
i nomLeu3.chr6              C 0 M 100
s rheMac8.chr7               60917335 51 + 169600520 gcatgttggcaaaggtgtGCTTTGTTTTGCTTTTgcagctgaggctatagg
i rheMac8.chr7              I 310 C 0
s macFas5.chr7              108444069 51 - 171882078 gcatgttggcaaaggtatGCTTTGTTTGGCTTCTGCagctgaggctatagg
i macFas5.chr7              I 310 C 0
s macNem1.NW_012011945v1        57439 51 -   2311642 gcatgttggcaaaggtgtGCTTTGTTTTGCTTTTGCagctgaggctatagg
i macNem1.NW_012011945v1    I 311 C 0
s cerAty1.NW_012002657v1        53047 51 -   1987038 gcatgttggcaaaggtgtGCTTTGTTTTGCTTTTGCagctgaggctatagg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21133620 51 -  24206276 gcatgttggcaaaggtgtGCTTTGTTTTGCTTTTGCagctgaggctatagg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        56372 51 -   1397330 GCATGTTGGCAAAGGTGTGCTTTGTTTTGCTTTTGCagctgaggctatagg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        71594 51 -   1784207 gcatgttggcaaaggcgtGCTTTGTCTTGCTTTTgcagctgaggctaaagg
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50505469 51 +  54856640 gcatattggcaaaagtgtGCTTTGTTCTGTTTTTGTAGCTGAGGCTATAGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       648548 51 -   2910086 gcatatcggcaaaagtgtGCTTTGTTTTCTTTTTGTATGtgaggctatagg
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40675496 51 +  42888418 gcatattggcaaaagtgtGCTTTGTTTTGTTTTTgtagctgaggctatagg
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e otoGar3.GL873530             663482 3636 -  36342412 I

a score=192140.000000
s hg38.chr15_KI270850v1_alt    366311 28 +    430880 cacaccactatgtccaactatttttatt
s panTro5.chr15              63519728 28 +  83230942 cacaccactatgtccaactatttttatt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80476809 28 +  99763055 cacaccactatgtccaactatttttatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        76990 28 -   1709092 cacaccactatgtccaactatttttatt
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60917386 28 + 169600520 cacaccactatgtccaagtattttcatt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108444120 28 - 171882078 cacaccactatgtccaagtattttcatt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        57490 28 -   2311642 cacaccactatgtccaagtattttcatt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        53098 27 -   1987038 cacaccactatgtccaagtattttcat-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21133671 28 -  24206276 cacaccactatgtccaagtattttcatt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        56423 28 -   1397330 cacaccactatgtccaagtgttttcatt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        71645 28 -   1784207 cacaccactatgtccaagtattttcatt
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50505520 28 +  54856640 CACATCACTAAGTCCAACTttttttttt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       648599 28 -   2910086 cacaccactaagtccaactattttttct
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40675547 28 +  42888418 cacaccactatgtccaatttttattatt
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e otoGar3.GL873530             663482 3636 -  36342412 I
e nomLeu3.chr6               17236426 100 - 121039945 M

a score=-9407.000000
s hg38.chr15_KI270850v1_alt    366339 1 +    430880 -g
s panTro5.chr15              63519756 1 +  83230942 -g
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80476837 1 +  99763055 -g
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        77018 1 -   1709092 -g
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17236526 1 - 121039945 -G
i nomLeu3.chr6              M 100 C 0
s rheMac8.chr7               60917414 1 + 169600520 -g
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108444148 1 - 171882078 -g
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        57518 1 -   2311642 -g
i macNem1.NW_012011945v1    C 0 C 0
s chlSab2.chr29              21133699 1 -  24206276 -g
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        56451 1 -   1397330 -g
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        71673 1 -   1784207 -g
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50505548 1 +  54856640 t-
i saiBol1.JH378108          C 0 I 10
s cebCap1.NW_016107610v1       648627 1 -   2910086 t-
i cebCap1.NW_016107610v1    C 0 I 13
s aotNan1.NW_018505940v1     40675575 1 +  42888418 t-
i aotNan1.NW_018505940v1    C 0 I 4
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22271377 3801 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e otoGar3.GL873530             663482 3636 -  36342412 I
e cerAty1.NW_012002657v1        53125 0 -   1987038 C

a score=5528878.000000
s hg38.chr15_KI270850v1_alt    366340 597 +    430880 ttttgtagagaca--gagtct--cactatgttggccaggctggtctcgaactcctgggctcaagggatcctcccaccccaggctctcaaagtgctgggattacatgtgtgagccactgtgcccgacTGCAAAGGTGTA-TTTTTAAACTAACTT--AAAAAATTTTTTTTTAATTTCCTACAAATGTTGCACAAAAACTATTTTAAGTTTTCTCTATCTTTTAAGTATACTGAATTAAGGTGTGTCTAAGTGAAGGAC----AGAC----ATAGTAGTAATCTCAAATCTG----T-TTTT---------ATT-------TTTTGAGATGGAtttttagaaacagaatcttgctctgtcaggcgggaatgcagtggcataaacacaattcactgcagactagacttccaggtttaagagattttcctacctc-agcctcccaagtagctgggactacaggtgcatgccaccatacctggctaa-tttttt--tggga------------agta-tatttttgtaaagacagggtcttgctatgttgccc-------aagctgttctcagactcttgagctcaagtgatctgcctgccccagcctcacaaagtgctgggattacaggtgtgagccactgcattcagccTCATCTGAAA
s panTro5.chr15              63519757 592 +  83230942 ttttgtagagaca--gagtct--cactatgttggccaggctggtctcgaactcctgggctcaagggatcctcccacctcaggctctcaaagtgctgggattacatgtgtgagctactgtgcctgacTGCAAAGGTGTA-TTTTTAAACTAACTT--AAAATTTTTTTTTTTAATTTCCTACAAATGTTGCACAAAAACTATTTTAAGTTTTCTCAATCTTTTAAGTATACTGAATTAAGGTGTGTCTAAGTGAAGGAC----AGAC----ATAGTAGTAATCTCAAATCTG----T-TTTT---------ATT-------TTTTGAGATGGAtttttagaaacagaatcttgctctgtcgggcggcaatgcagtggcataaacacaattcactgcagactagacttccaggtttaagagattttcctacctc-agcctcccaagtagctgggactacaggtgcatgccaccatacctggctaa-tttttt--ggggg------------ggta-tatttttgtaaagacagggtcttgctatgttgccc-------aggctgttctcagactcttgagctcaagtgatctgcctgccccagcctcacaaagtgctgggattacaggtgtgagc-----caTTCAGCCTCATCTGAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80476838 592 +  99763055 ttttgtagagaca--gagtct--cactatgttggccaggctggtctcgaactcctgggctcaagggatcctcccacctcaggctctcaaagtgctgggattacatgtgtgagctactgtgcctgacTGCAAAGGTGTATTTTTTAAACTAACTT--AAAATTTTTTTTTTTAATTTCCTACAAATGTTGCACAAAAACTATTTTAAGTTTTCTCAATCTTTTAAGTATACTGAATTAAGGTGTGTCTAAGTGAAGGAC----AGAC----ATAGTAGTAATCTCAAATCTG------TTTT---------ATT-------TTTTGAGATGGAtttttagaaacagaatcttgctctgtcaggcgggaatgcagtggcataaacacaattcactgcagactagacttccaggtttaagagattttcctacctc-agcctcccaagtagctgggactacaggtgcatgccaccatacctggctaa-tttttt--ggggg------------ggta-tatttttgtaaagacagggtcttgctatgttgccc-------aggctgttctcagactcttgagctcaagtgatctgcctgccccagcctcacaaagtgctgggattacaggtgtgagc-----caTTCAGCCTCATCTGAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        77019 596 -   1709092 ttttgtagagaca--gagtct--cactatgttggcca-gctggtctcgaactcctgggctcaagggatcctcccacctcaggctctcaaagtgctgggattacatgtgtgagccgctgtgcctgacTGCAAAGGTGTA-TTTTTAAACTAACTT--AAAAAAAATTTTTTTAATTTCCTACAAATGTTGCACAAAAACTATTTTAAGTTTTCTCAATTTTTTAAGTATACTGAGTTAAGGTGTGTCTAAGTGAAGGAC----AGAC----ATAGTAGTAATCTCAAATCTG----T-TTTT---------ATT-------TTTTAAGATGGAtttttagaaacagaatcttgctccgtcaggcgggaatgcagtggcataaacacaattcactgcagactagacttccaggtttaagagattttcctacctc-agcctcccaagtagctgggactacaggtgcatgccaccatacctagctaa-tttttt--ggggg------------ggta-tatttttgtaaagacagggtcttgctatgttgctc-------aggctgttctcagactcttgagctcaagtgatctgcctgccccagcctcacaaagtgctgggattacaggtgtgagccactgcattcagccTCATCTGAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17236527 604 - 121039945 ttttgtagagaca--gggtct--cactatgttggccaggctggtctcaaactcctgggctcaagggatcctcccacctcaggctctcaaagtgctgggattacaggtgtgagccactgtgcctgacTGCAAAAGTGTA-TTTTTAAACTAACTTAAAAAAAAATTTTGTTAAATTTCCTACAAATGTTGCACAAGAACTATTTTAAGTTTTCTCAGTGTTTTAAGTATACTGAGTTAAGGTGTGGCTAAGTGAAGGAC----AGAC----ATAGTAGTAATCTCAAATCTGCtttt-tttt---------att-------ttttgagatggatttttagaaacagaatcttgttctgtcaggctggaatgcagtggcataaacacaattcactgcagactacacttccaggtttaagtgattctcctacctc-agcctcccaagtagctgggactacaggtgcatgccaccatacccagctaattttttt--ggggg------------ggta-tatttttgtaaagacagggtcttgctatgttgccc-------aagctgttctcagactcttgagctcaagtgatctgcctgccccagcctcccaaaatgctgggattacaggcgtgagccactgcattcagccTCATCTGAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60917415 597 + 169600520 ttttgtacagaca--gggtct--cactatgttacccaggttggtctcgaactcctgggctcaagggatcctcccacctcagcctctcaaagtgctgggattacaggtgtgaaccactgtgcctgacTGCAAAGGTATA-TTTT-----TAACTT--AAAA-TTTTTTTTTTAATTTCCTACAAATGTTGCACAAAAACTATTTTAAGTTTTCTCAATCTTTTACGTAGACTGAGTTAAGATGTGTCTAAGTGAAGGAC----AGAC----ATAGTAATAATCTCAAATCTG----C-TTTTTAAAA----ATT-------TTTTGAGATGGAtttttagaaacagaatcttgctctgtcaggctggaatgcagtggcataaacacaattcactgcagactagacttccaggcttcagtgattctcctacctc-agcctcccaagtagctgggactacaggtgcatgccaccatacccagctagttttttt--tgggg------------ggta-tatttttgtaaagacgaggtcttgctatgttgccc-------aagctattctcaggctcttgagctcaagtgatctgcctgccccagcctcccaaagtgctgggattacaggcgtgagccactgcattcagccTCATCTGAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108444149 597 - 171882078 ttttgtacagaca--gggtct--cactatgttacccaggttggtctcgaactcctgggctcaagggatcctcccacctcagcctctcaaagtgctgggattacaggtgtgaaccactgtgcctgacTGCAAAGGTATA-TTTT-----TAACTT--AAAA-TTTTTTTTTAAATTTCCTACAAATGTTGCACAAAAACTATTTTAAGTTTTCTCAATCTTTTACGTAGACTGAGTTAAGATGTGTCTAAGTGAAGGAC----AGAC----ATAGTAATAATCTCAAATCTG----C-TTTTTAAAA----ATT-------TTTTGAGATGGAtttttagaaacagaatcttgctctatcaggctggaatgcagtggcataaacacaattcactgcagactagacttccaggcttcagtgattctcctacctc-agcctcccaagtagctgggactacaggtgcatgccaccatacccagctagttttttt--ggggg------------ggta-tatttttgtaaagacgaggtcttgctatgttgccc-------aagctattctcaggctcttgagctcaagtgatctgcctgccccagcctcccaaagtgctgggattacaggcgtgagccactgcattcagccTCATCTGAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        57519 597 -   2311642 ttttgtacagaca--gggtct--cactatgttacccaggttggtctcgaactcctgggctcaagggatcctcccacctcagcctctcaaagtgctgggattacaggtgtgaaccactgtgcctgacTGCAAAGGTATA-TTTT-----TAACTT--AAAA-TTTTTTTTTAAATTTCCTACAAATGTTGCACAAAAACTATTTTAAGTTTTCTCAATCTTTTACGTAGACTGAGTTAAGATGTGTCTAAGTGAAGGAC----AGAC----ATAGTAATAATCTCAAATCTG----C-TTTTTAAAA----ATT-------TTTTGAGATGGAtttttagaaacagaatcttgctctgtcaggctggaatgcagtggcataaacacaattcactgcagactagacttccaggcttcagtgattctcctacctc-agcctcccaagtagctgggactacaggtgcatgccaccatacccagctagttttttt--ggggg------------ggta-tatttttgtaaagacgaggtcttgctatgttgccc-------aagctattctcaggctcttgagctcaagtgatctgcctgccctagcctcccaaagtgctgggattataggcgtgagccactgcattcagccTCATCTGAAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        53125 595 -   1987038 ttttgtacagaca--gggtct--cactatgttacccaggttggtctcgaactcctgggctcaagggatcctcccacctcagcctctcaaagtgctgggattacaggtgtgaaccactgtgcctgacTGCAAAGGTATA-TTTT-----TAACTT--AAAA-TTTTTTTTT-AATTTCCTACAAATGTTGCACAAAAACTATTTTAAGTTTTCTCAATCTTTTACGTAGACTGAGTTAAGATGTGTCTAAGTGAAGGAC----AGAC----ATAGTAATAATCTCAAATCTG----C-TTTTTAAAA----ATT-------TTTTGAGATGAAtttttagaaacagaatcttgctctgtcaggctggaatgcagtggcataaacacaattcactgcagactagacttccaggcttcagtgattctcctacctc-agcctcccaagtagctgggactacaggtgcatgccaccatacccagctag-tttttt--ggggg------------ggta-tatttctgtaaagacgaggtcttgctatgttgccc-------aagctattctcaggctcttgagctcaagtgatctgcctgccccagcctcccaaagtgctgggattacaggcgtgagccactgcattcagccTCATCTGAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21133700 598 -  24206276 ttttgtacaggcaccgggtct--cactatgttgcccaggttggtctcgaactcctgggctcaagggatcctcccacatcagcctctcaaagtgctgggattacaggcgtgaaccactgtgcctgacTGCAAAGGTATA-TTTT-----TAACTT--AAAA-TTTTTTTTTTAATTTCCTACAAATGTTGCACAAAAACTATTTTAAGTCTTCTCAATCTTTTACGTAGACTGAGTTAAGATGTGTCTAAGTGAAAGAC----AGAC----ATAGTAATAATCTCATATCTG----C-TTTTTAAAA----ATT-------TTTTAAGATGGAtttttagaaacagaatcttgctctgtcaggctggaatgcagtggcataaacacaattcactgcagactagacttccaggcttcagtgattctcctacctc-agcctcccaagtagctgggactacaggtgcatgccaccatacccagctag-tttttt--ggggg------------ggta-tatttttgtaaagacaaggtcttgctatgttgccc-------aagctattctcaggctcttgagctcaagtgatctgcctgcttcagcctcccaaagtgctgggattacaggcgtgagccactgcattcagccTCATCTGAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        56452 595 -   1397330 ttttgtacagaca--gggtct--cactatgttacccaggttggtctcgaactcctgggctcaagggatcctcccacctcagcctctcaaagtgctgggattacaggtgtgaaccactgtgcctgacTGCAAAGGTATA-TTTT-----TAACTT--AAAA--TTTTTTTTTAATTTCCTACAAATGTTGCACAAAAACTATTTTAAGTTTTCTCAATCTTTTACGTAGACTGAGTTAAGATGTGTCTAAGTGAAGGAC----AGAC----ATAGTAAAAATCTCAAATCTG----C-TTTTTAAAA----ATT-------TTTTGAGATGAAtttttagaaacagaatcttgctctgtcaggctggaatgcagtggcataaacacaattcactgcagactagacttccaggcttcagtgattctcctacctc-agcctcccaagtagctgggactacaggtgcatgccaccatacccagctac-tttttt--ggggg------------ggta-tatttttgtaaagacgaggtcttgctatgttgccc-------aagctattctcaggctcttgagctcaagtgatctgcctgccccagcctcccaaagtgctgggattacaggcgtgagccactgcattcagccTCATCTGAAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        71674 600 -   1784207 ttttgtacagaca--gggtct--cactatgttgcccaggttggtcttgaactcctgggctcaagggatcctcccacctcagcctctcaaagtgctgggattacaggtgtgagccactgtgcctgacTGCAAAGGTATA-CTTT-----TAACTT--AAAAAAATTTTTTTTAATTTCCTACGAATGTTGCACAAAAAATATTTTAAGTTTTCTCAATCTTTTACGTAGACTGAGTTAAGATGTGTCTAAGTGAAGGAC----AGAC----ATAGTAATAATCTCAAATCTG----C-TTTTTAAAA----ATT-------TTTTGAGATGGAtttttagaaacagaatcttgctctgtcagactggagtgcagtggcataaacacaattcactgcagactagacttccaggcttcagtgattctcctacctc-agccttccaagtagctgggacttcaggtgcatgccaccatatccagctagttttttttgggggg------------ggta-tatttttgtaaagacagggtcttgctatgttgccc-------aagctgttctcaggctcttgagctcaagtgatctgcctgccccagcctcccaaagtgctgggattacaggcgtgagccactgcattcagccTCATCTGAAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22275178 624 + 158406734 ttttgtagagaca--gggtct--cactatgttgcccaggctagtctcgacctcctgggctcaagggatcctcccacctcagcctctcaaaatgctgcaattacaggtgtgagccactgT-CCTGACTGCAAAGGTGTA-TTTTTAAACTAACTT--AAAA-----TTCTTAAATTTCCTACTAATGTTGCACAAAAAGTATTATAAGTTTTCTCAATCCATTAAGTATACTGAGTTAAGATGTATCTAAGTGAAGGACAAAGAGAC----TTAGTAGTAATGTCAAATCTG----TGTTTTTTG------TTTGATTTGATTTTGAGACAAACttttagaaacagaattttgctctggcaggctggaatgcagtggaataaacacagctcactgcagactagacttccaggcttaagtgactctcctacctc-aacctcccaagtagctgggactgcaggtgcataccaccatacctggct---tttttt--gtttgttttttttttttggtattattcttgtagagacagggtcttgctatgttgcccaacatataagccactctcagactcttgagctcaaatgatctgcctgctccagcctcccaaagggctgggattacaggcgtgagccactgcactcagcctcatctgaaa
i calJac3.chr6              I 3801 I 4
s saiBol1.JH378108           50505559 614 +  54856640 tttttaagagaca--gggtct--caccatgttgcccaggctagtctcgaactcctgtgctcaagggatcctcccacctcagcctctcaaagtgctaccattacaggtgtgagccaTTGT-CCTGATTACAAAGGTGTA-TTTTTAACCTAACTT--AAAA-----TTCTTAAATTTCCTACAAATATTGCACAAAAC-TATTGTAAGttttctcaatcctttaagtata-----ttaagatgtatctaagtgaaggacaaagagacgtagttagtagtaatgtcaaatctg----t-ttttttgttttgttttgttttgattttgAGATGAACttttagaaacagaattttgctctgtcaggctggaatgcagtggaataaacaaagctcactgcagactagacttccaggcttaagtgactctcctacctcaaacctctcaagtagctgggactgcaggtgcatgccaccatatctggct---ttgttt--g-------------tttggta-tatttttgtagagacagggtcttgctatgttgcccaacataaaagccattctcagactcttgagctcaaatgatctgcctgctccagcctcccaaagtgctgggattacaggcgtgagccactgcactcagcctcatctgaaa
i saiBol1.JH378108          I 10 I 4
s cebCap1.NW_016107610v1       648641 611 -   2910086 ttttttagagaca--gggtct--cactctgttgcccaggctagtctcaaactcttgggctcaagggatcctcccacctcagcctctcaaactgttgcaattacaggtgtgagccattgT-CCTGATTACAAAGGTATA-TTTTTAAACTAACTT--AAAA-----TTCTTAAATTTCCTACAAATGTTGCACAAAAACTATTATAAGTTTTCTCAATCCTTTAAGTATACTGAGTTAAGATATATCTAAGTGAAGGACAAAGAGAC----ATAGTAGTAATGTCAAATCCG----TGTTTT---------TTTGTTTTGATTTTGAGATGAACTTTTACaaacagaattttgctctgtcaggctggaatgcagtggaataaacacagctcaccgcagactagacttctaggcttaagtgactctcctacctc-aacctcccaagtagctgggactgcaggtgcatgccaccatatctggct---tttttt--gtttg---------tttggta-tatttttgtagagacagggtcttgctatgttgcccaatataaaagccattctcagactcttgggctcaaatgatctgcctgctccagcctcccaaagtgctgggattacaggcgtaagccactgcactcagccTCATCTGAAA
i cebCap1.NW_016107610v1    I 13 I 2144
s aotNan1.NW_018505940v1     40675580 622 +  42888418 ttttgtagagaca--gggtctcacactatgttgcccaggctagtctctaactcctggtctcaagggatcctcccacctcagcctctcaaagtgctgcgattacaggtgtgagccactgT-CCTGACTACGAAGGTGTA-TTTTTAAACTAACTT--AAAA-----TTCTTAAATTTCCTACCAATGTTGCACAAAAACtattttaagttttctcaatcctttaagtatactgagttaagatgtatctaaatgaaggacaaagagacgtggttagtagtaatGTCAAATCTG----tgtttttgttgtt--gttgttttgattttgAGACGAACTTTCAgaaacagaattttgccctgtcaggctggaatgcagtggaataaacacagctcaccgcagactagacttccaggcttaagtgactctcctaccta---cctcccaagtagctgggactgcaggtgcatgccaccatacctggat---ttgttt--gtttg---------tttggta-tatttttgtagagacagggtcttgctatgttgcccaacatataagccattctcagactcctgagctcaaatgatctgcctgctccagccttccaaagtgctgggattacaggcatgagccactgcactcagcctcatctgaaa
i aotNan1.NW_018505940v1    I 4 I 1770
e mm10.chr7                  81382146 10520 + 145441459 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e otoGar3.GL873530             663482 3636 -  36342412 I

a score=74779.000000
s hg38.chr15_KI270850v1_alt    366937 11 +    430880 AATATAGCATT
s panTro5.chr15              63520349 11 +  83230942 AATATAGCATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80477430 11 +  99763055 AATATAGCATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        77615 11 -   1709092 AATATAGCATT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17237131 11 - 121039945 AATATGGCATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60918012 11 + 169600520 AATATAGCACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108444746 11 - 171882078 AATATAGCACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        58116 11 -   2311642 TATATAGCACT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        53720 11 -   1987038 AATATAGCACT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21134298 11 -  24206276 AATATAGCACT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        57047 11 -   1397330 AATATAGCACT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        72274 11 -   1784207 AATATAGCACT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22275806 11 + 158406734 gataaagcatt
i calJac3.chr6              I 4 I 1868
s saiBol1.JH378108           50506177 11 +  54856640 gataaagcatt
i saiBol1.JH378108          I 4 I 2230
e aotNan1.NW_018505940v1     40676202 1770 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e cebCap1.NW_016107610v1       649252 2144 -   2910086 I
e otoGar3.GL873530             663482 3636 -  36342412 I

a score=91124.000000
s hg38.chr15_KI270850v1_alt    366948 15 +    430880 GATAAAGCTATATTG
s panTro5.chr15              63520360 15 +  83230942 GATAAAGCTATATTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80477441 15 +  99763055 GATAAAGCTATATTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        77626 15 -   1709092 GATAAAGCTACATTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17237142 15 - 121039945 GATAAAGCTATATTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60918023 15 + 169600520 GATAAAGCTATAttg
i rheMac8.chr7              C 0 I 1459
s macFas5.chr7              108444757 15 - 171882078 GATAAAGCTATAttg
i macFas5.chr7              C 0 I 1456
s macNem1.NW_012011945v1        58127 15 -   2311642 GATAAAGCTATAttg
i macNem1.NW_012011945v1    C 0 I 1470
s cerAty1.NW_012002657v1        53731 15 -   1987038 GATAAAGCTATAttg
i cerAty1.NW_012002657v1    C 0 I 1447
s chlSab2.chr29              21134309 15 -  24206276 GATAAAGCTATAttg
i chlSab2.chr29             C 0 I 1449
s manLeu1.NW_012106908v1        57058 15 -   1397330 GATAAAGCTATAttg
i manLeu1.NW_012106908v1    C 0 I 9065
s colAng1.NW_012117110v1        72285 15 -   1784207 GATAAAGCTATATTG
i colAng1.NW_012117110v1    C 0 I 94
e aotNan1.NW_018505940v1     40676202 1770 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22275817 1868 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e cebCap1.NW_016107610v1       649252 2144 -   2910086 I
e otoGar3.GL873530             663482 3636 -  36342412 I
e saiBol1.JH378108           50506188 2230 +  54856640 I

a score=565531.000000
s hg38.chr15_KI270850v1_alt    366963 644 +    430880 ggccaggcacggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctaataaaaatacaaaaaattagccgggcatggtggcaggtgcctgcagtcccagctaatcgggaggctgaggcagaagaatggcgtgaacccaggaggcggagtttgcagtgagccgagatcgtgccactgcactccagcctgggcaacagagcgagactccgtctcaaaaaaaaataaaaaataaaaaaGCTACAttgataaagcattattggtatagttaggaaactgagtaattccatgtctggtatgactaggtaaaacgtcttttcacaaattagctggttttccgttctttcttttcaaccaatatgaaggaggaatgaacgcaactatcagccagtagatgactaaaaataataatacatgactaattttttgcacagaact-aaatcaaag-aattgtatgaactagttcattccccatctactta-ttttatgtgaacaagtttactcagggcacaaacctatggaaacaaaatgtatatatacagtgttgaaaattccaagttggtgggcacagtggttcaca
s panTro5.chr15              63520375 644 +  83230942 ggccaggcacggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctaataaaaatacaaaaaattagccaggcatggtggcaggtgcctgcagtcccagctaatcgggaggctgaggcagaagaatggcgtgaacccaggaggcggagcttgcagtgagccgagatcgcgccaccgtactccagcctgggcaacagagcgagactccgtctcaaaaaaaaataaaaaataaaaaaGCTACAttgataaagcattattggtatagttaggaaactgagtaattccatgtctggtatgactaggtaaaacgtcttttaacaaattagctggttttcagttctttcttttcaacaaatatgaaggaggaatgaacacaactatcagccagtagatgactaaaaataataatacatgactaattttttgcacagaact-aaatcaaag-aattgtatgaactagttcattccccatctactta-ttttatgtgaacaagtttactcagggcacaaacctatggaaacaaaatgtatatatacagtgttgaaaatcccaagttggtgggcacagtggttcaca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80477456 643 +  99763055 ggccaggcacggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctaataaaaatacaaaaaattagccaggcatggtggcaggtgcctgcagtcccagctaatcgggaggctgaggcagaagaatggcgtgaacccaggaggcagagcttgcagtgagccgagatcgcgccactgtactccagcctgggcgacagagcgagactccgtctcaaaaaaaaat-aaaaataaaaaaGCTACACtgataaagcattattggtatagttaggaaactgagtaattccatgtctggtatgactaggtaaaacgtcttttaacaaattagctggttttcagttctttcttttcaacaaatatgaaggaggaatgaacacaactatcagccagtagatgactaaaaataataatacatgactaattttttgcacagaact-aaatcaaaa-aattgtataaactagttcattccccatctactta-ttttatgtgaacaagtttactcagggcacaaacctatggaaacaaaatgtatatatacagtgttgaaaatcccaagttggtgggcacagtggttcaca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        77641 644 -   1709092 ggccaggcacggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcatggtggcaggcgcctgtagtcccagctaatcgggaggctgaggcagaagaatggcgtgaacccaggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcaacagagcgagaccccgtctcaaaaaaaaataaaaaataaaaaaGCTACAttgataaagcattattggtatagtcaggaaactgagtaattccatgtctggtacgactaggtaaaacgtcttttcacaacttagctggttttcagttctttcttttcaacaaatatgaaggaggaatgaacgcaactatcagccagtagatgactaaaaataataatacatgactaattttttgcacagaact-aaatcaaag-aattgtatgaactagttcattccccatctactta-ttttatgtgaacaagtttactcagggcacaaacctatggaaacaaaaggtatatatacagtgttgaaaatcccaagttggtgggcacagtggttcata
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17237157 643 - 121039945 ggccaggcgcagtggctcatgcctgtaatctcagcactttgggaggccgaggcgggtggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaaatgagccgggcgtggtggcgggcgcctgtagtcccagccactcgggaggctgaggcaggagaatggcgtgaacccaggaggcagagcttgcagtgagtcgagatcgcgccactgcactcgagcctgggcgacagagcgagactccgtctcaaaaaaaaataaaaaataaaaaaGCTATAttgataaagcattattggtacagttaggaaactgagtaattccatgtctggtatgactaggtaaaaaatcttttcacaaattagctgggtttcagttctttcttttca--caatatgaaggagg-atgaatgcaactatcagccagtagatgactaaaaataataatacatgactaattttttgcacagaagtaaaatcaaagaaattgtatgaactagttcattccccatctacttatttttatgtgaacaagtttactcagggcacaaacctatgg-aacaaaacgtatatatacagtgctgaaaatcccaagttggtgggcacagtggttcaca
i nomLeu3.chr6              C 0 C 0
e aotNan1.NW_018505940v1     40676202 1770 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22275817 1868 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e cebCap1.NW_016107610v1       649252 2144 -   2910086 I
e otoGar3.GL873530             663482 3636 -  36342412 I
e colAng1.NW_012117110v1        72300  94 -   1784207 I
e manLeu1.NW_012106908v1        57073 9065 -   1397330 I
e chlSab2.chr29              21134324 1449 -  24206276 I
e cerAty1.NW_012002657v1        53746 1447 -   1987038 I
e macNem1.NW_012011945v1        58142 1470 -   2311642 I
e macFas5.chr7              108444772 1456 - 171882078 I
e rheMac8.chr7               60918038 1459 + 169600520 I
e saiBol1.JH378108           50506188 2230 +  54856640 I

a score=1219653.000000
s hg38.chr15_KI270850v1_alt    367607 938 +    430880 cctgtaatcccagcactttgggaagccgaggcaggtggatcactggagttcaggagctcgagaccagacatggcgaaaccccatctcaactaaaaaatacaaaaattagcc-gggtgtggtggcgtgcacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaagaggcggaggttgcagtgagccaagatcatgccactgcactccagcctgggcaacaaagcaagattctgtctc-aaaaaaacaa-----acaaacaaaaaaaac----cccaagtcattccagcaataagtcagtcatacaaaattacatgtttttttgttttgttttgtttttt-----gagagagtctcactctgtcgtcctgactgcaatggcaaaatcttggcttactacaacctccacgtcctaggctcagaaaattctcctgctccagcctcccgagtagctgggattatacacatgcaccaccacgcccagctaatttttgaac-tttagtagagacagggtttcaccatgttggccaggctggtcttgaactcctgacctcatgtgatctacccacctcggcctcccaaagtgctaggatcacaggcatgaaccaccatgcccagccttaaaattacatgagattttaaaagacctcaatttatgtcattaaaaactatttccaggctaggtgtggtggctcacatctgtaatcccaacactttagggggctaaagcaggaagatcacttgagcccaggagttcaagact-gcctgggcaacacagggagaccccgtttctacaaaaagtaagacaaatagctggacatggtggtgtttgtctgtggtcccagctactgaggaggttgaggctacgatgaaccatgattgcgccactgcactctggcttaggcgacaggtaccttgtctc------aaacaaaaaacaaaac
s panTro5.chr15              63521019 943 +  83230942 cctgtaatcccaacactttgggaagccgaggcaggtggatcactggagttcaggagctcgagaccagacatggcaaaaccccatctcaactaaaaaatacaaaaattagct-gggtgtggtggcgtgcacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaagaggcggaggttgcagtgagccaagatcatgccactgcactccagcctgggcaacagagcaagattctgtctc-aaaaaaacaa-----acaaaaaaaaaaacc----cccaagtcattccaacaataagtcagtcatacaaaattacatgtttttttgttttgttttgtttttttttgagacagagtctcactctgtcgtcctgagtgcaatggcaaaatcttggcttactacaacctccacatcctaggctcagaaaattctcctgctccagcctcccgagtagctgggattatacacatgcaccaccacgcccagctaatttttgaac-tttagtagagacagggtttcaccatgtcggccaggctggtcttgaactcctgacctcatgtgatctacccacctcggccttccaaagtgctaggatcacaggcatgaaccaccgtgcccagccttaaaattacatgagattttaaaagacctcaatttatgtcattaaaaactatttccaggctaggtgtggtggctcacatctgtaatcccaacactttagggggctaaagcaggaagatcacttgagcccaggagttcaagact-gcctgggcaacacagggagaccccgtttctacaaaaagtaagacaaatagctggacatggtggcgtgtgtctgtggtcccagctactgaggaggttgaggctacgatgaaccatgattgcgccactgcactctggcttaggcgacaggtaccttgtctc------aaacaaaaaacaaaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80478099 944 +  99763055 cctgtaatcccagcactttgggaagccgaggcaggtggatcactggagttcaggagctcgagaccagacatggcaaaaccccatctcaactaaaaaatacaaaaattagct-gggtgtggtggcgtgcacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaagaggcggaggttgcagtgagccaagatcatgccactgcactccagcctgggcaacagagcaagattctgtctcaaaaaaaacaa-----acaaacaaaaaaaac----cccaagtcattccaacaataagtcagtcatacaaaattacatgtttttttgttttgttttgttttttttgtagacagagtctcactctgtcgtcctgagtgcaatggcaaaatcttggcttactacaacctccacgtcctaggctcagaaaattctcctgctccagcctcccgagtagctgggattatacacatgcaccaccacgcccagctaatttttgaac-tttagtagagacagggtttcaccatgttggccaggctggtcttgaactcctgacctcatgtgatctatccacctcggccttccaaagtgctaggatcacaggcatgaaccaccgtgcccagccttaaaattacatgagattttaaaagacctcaatttatgtcattaaaaactatttccaggctaggtgtggtggctcacatctgtaatcccaacactttagggggctaaagcaggaagatcacttgagcccaggagttcaagact-gcctgggcaacacagggagaccccgtttctacaaaaagtaagacaaatagctggacatggtggcgtgtgtctgtggtcccagctactgaggaggttgaggctacgatgaaccatgattgcgccactgcactctggcttaggcgacaggtaccttgtctc------aaacaaaaaacaaaac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        78285 938 -   1709092 cctgtaatcccagcactttgggaagccgaggcaggtggatcactggagttcaggagctcgagaccagacatggcgaaaccccatctcaactaaaaaatacaaaaattagccggggtgtggtggcgtgcacctgtagtcccagctactcgggaggctgaggcaggagaatcacttgaacccaagaggcggaggttgcagtgagcaaagatcatgccactgcactccagcctgggcaacagagcaagactctgtctc-aaaaaaacaa-----acaaacaaaaaaaac----cccaagtcattccagcaatcagtcagtcatacaaaattaca---ttttttgttttgttttgtttttt---gagacagagtctcactctgtcgtcctgagtgcaatggcaaaatcttggcttactacaacctccacgtcctaggctcagaaaattctcctgcttcagcctcccgagtagctgggattatacacatgcaccaccacgcccagctaatttttgaac-tttagtagagacagggtttcaccatgttggccaggctggtcttgaactcctgacctcatgtgatctacccacctcggcctccctaagtgctaggatcacaggcatgaaccaccgtgcccagccttaaaattacatgagattttaaaagacctcaatttatgtcattaaaaactatttccaggctaggtgtggtggctcacatctgtaatcccaacactttagggggctaaagcaggaagatcacttgagcccaggagttcaagact-gcctgggcaacacagggagaccccgtttctacaaaaagtaagacaaatagctggacatggtggcatgcgtctgtggtcccagctactgaggaggttgaggctacgatgaaccatgattgcgccactgcactctggcttaggcgacaggtaccttgtctc------aaacaaaaaacaaaac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17237800 950 - 121039945 ggtgtaatcccagcactttgggaagccgaggcaggtggatcactggaggtcaggagctcgagaccagacatggcgaaaccccatctcaactaaaaaatacaaaaattagcc-aggtatggtggcgtgcacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaagaggcggaggttacagtgagccaagatcatgccactgcactccagcctgggcaacagagcaagactctgtctc-aaaaaaacaa-aaacaaaaacaaacaaaac----cccaagtcattccagcaataagtcagtcatacaaaattacatg-ttttttgttttgttttgttttct---gggacagagtctcactctgtcgtcctgagtgcaatggcaaaatcttggcttactacaacctccacctcctaggctcagaaaattctcctgctccagcctcccgagtagctgggattatatacatgcaccaccacgcccagctaatttttgaacttttagtagagacagggtttcaccatgttggccaggctggtcttgaactcccgacctcaggtgatctacccacctcggcctctgaaagtgctaggattacaggcatgaaccaccgtgcccagccttaaaattacatgagattttaaaagatctcaatttatgtcattaaaaactatttccaggctaggtgtggtggctcacatctgtaatcccaacactttagggggctaaagcaggaagatcacttgagcccaggagttcaagacc-gcctgggcaacacagggagaccccgtttctacagaaaataagacaaatagctggacatggtggcgtgcgtctgtggtcccagctactgaggaggctgaggctacgatgagccatgattgtgccactgcactctggcttaggcaacaggtaccttgtctcaaacaaaaacaaaaaacaaaac
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012117110v1        72394 939 -   1784207 cctgtaatcccagcactttgggaggccgagacaggtggatcagcggaggtcaggagctcaagaccagacatgacgaaaccccatctcaactaaaaaatac-aaaattaacc-gggtgtggtggcgtgcacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacctgagaggtggaggttgcagtgagccaagatcatgccactgcactccagcctgggcaacaga--------ctgtctc-aaaaaaaaaaaaaaagcaaaaaaaaaaaaCAACACCCAGGTCATTCCAGCAACAAGTCAGTCATGCAAATTTACA------ttttttttgttttgtttttt---gagacagagtctcactctgtcatcctgagtgcaatggcaaaatattggcttactacgacctccacctcccaggctcagaaaattctcctgccgcagcctcccgagtagctgggataatacacatgcaccactacgcccagctaatttttgaacttttagtagagacagggtttcaccatgttggctaggctggtcttgaactcctgacctcaggtgatgcacccccctcggcctcccaaagtgctaagattacaggcatgaaccactgtgaccagccTTAAAATTACATGAGATTTTAAAAGACTTCAATTTATGTCATTAAAAACTATTTCCAggctaggtgtgatagctcacatctgtaatcccaacactttagggggataaagcaggaagatcacttgagcccaggagttcaagaccagcctgggcaacacagggagaccctgtttctacaaaaagtaagacaaatagctggacatggtggcgtgtgtctgtggtcccagctactgaggaggttgaggctacgatgagccatgattgcgccactgcactctggcttagtcaacaggtaccttgtctcaaa---aaaaaaaaaaaaaaaC
i colAng1.NW_012117110v1    I 94 C 0
e aotNan1.NW_018505940v1     40676202 1770 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22275817 1868 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e cebCap1.NW_016107610v1       649252 2144 -   2910086 I
e otoGar3.GL873530             663482 3636 -  36342412 I
e manLeu1.NW_012106908v1        57073 9065 -   1397330 I
e chlSab2.chr29              21134324 1449 -  24206276 I
e cerAty1.NW_012002657v1        53746 1447 -   1987038 I
e macNem1.NW_012011945v1        58142 1470 -   2311642 I
e macFas5.chr7              108444772 1456 - 171882078 I
e rheMac8.chr7               60918038 1459 + 169600520 I
e saiBol1.JH378108           50506188 2230 +  54856640 I

a score=224586.000000
s hg38.chr15_KI270850v1_alt    368545 173 +    430880 aagcatttccaataaacaattattaaagaataaaactttatcaagatttataacatttagattgccttaattgccctaaca-atcatcattatcacctttgagacacaggaaataatttaaaatttcagtttatgtacttttgttgttacagagaaggatgacatgtgatcaac
s panTro5.chr15              63521962 173 +  83230942 aagcatttccaataaacaattattaaagaataaaactttatcaagatttataacatttagattgtcttaattgccctacca-atcatcattatcacctttgagacacaggaaataatttaaaatttcagtttatgtacttttgttgttacagagaaggatgacatgtgatcaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80479043 170 +  99763055 aagcatttccaataaacaattattaaagaataaaactttatcaagatttataacatttagattgtcttaattgccctacca-atcatc---atcacctttgagacacaggaaataatttaaaatttcagtttatgtacttttgttgttacagagaaggatgacatgtgatcaac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        79223 172 -   1709092 aagcatttccaataaacaattatt-aagaataaaactttatgaagatttataacatttagattgtcttaattgccttacca-atcgtcattatcacctttgagacacaggaaataatttaaaatttcagtttatgtacttttgttgttacagagaaggatgacatgtgatcaac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17238750 173 - 121039945 atgcatttccaataaacaattattaaagaataaaattttaccaagatttataacatttagattgtcttaattgccctacca-atcgtcattatcacctttgagacacaggaaataatttaaaatttcagtttatgtacttttgttgttacagagaaggatgacatatgatcaac
i nomLeu3.chr6              C 0 C 0
s colAng1.NW_012117110v1        73333 130 -   1784207 AAGTATTTCCAAT-AACAATTATTAAAGAATACAATTTTATCAAGATTTATAACATTTATATTGTCTTAACTGCACTACTG-ATCGTCATTATTGTCTTTGAGAcacaggaaataatttaaaatttcagttt------------------------------------------
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873530             667118 169 -  36342412 aagcatttataataaaCAATT----AAGAATAAAATTTTATTGACATTCATAACATTTAGATTGTCCTAATTGTCCTGTCATAGCAACCCAGTAAACTTACAG-CTCTTGAATaacattagaatttcaattcaggttattattttgttgtaaagtagtatgacatatgaccaac
i otoGar3.GL873530          I 3636 C 0
e aotNan1.NW_018505940v1     40676202 1770 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22275817 1868 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e cebCap1.NW_016107610v1       649252 2144 -   2910086 I
e manLeu1.NW_012106908v1        57073 9065 -   1397330 I
e chlSab2.chr29              21134324 1449 -  24206276 I
e cerAty1.NW_012002657v1        53746 1447 -   1987038 I
e macNem1.NW_012011945v1        58142 1470 -   2311642 I
e macFas5.chr7              108444772 1456 - 171882078 I
e rheMac8.chr7               60918038 1459 + 169600520 I
e saiBol1.JH378108           50506188 2230 +  54856640 I

a score=273.000000
s hg38.chr15_KI270850v1_alt    368718 3 +    430880 aaa
s otoGar3.GL873530             667287 3 -  36342412 aaa
i otoGar3.GL873530          C 0 I 414
e aotNan1.NW_018505940v1     40676202 1770 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22275817 1868 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e cebCap1.NW_016107610v1       649252 2144 -   2910086 I
e panPan2.chr15              80479213 0 +  99763055 C
e colAng1.NW_012117110v1        73463 0 -   1784207 C
e manLeu1.NW_012106908v1        57073 9065 -   1397330 I
e chlSab2.chr29              21134324 1449 -  24206276 I
e cerAty1.NW_012002657v1        53746 1447 -   1987038 I
e macNem1.NW_012011945v1        58142 1470 -   2311642 I
e macFas5.chr7              108444772 1456 - 171882078 I
e rheMac8.chr7               60918038 1459 + 169600520 I
e nomLeu3.chr6               17238923 0 - 121039945 C
e saiBol1.JH378108           50506188 2230 +  54856640 I
e gorGor5.CYUI01015556v1        79395 0 -   1709092 C
e panTro5.chr15              63522135 0 +  83230942 C

a score=23062.000000
s hg38.chr15_KI270850v1_alt    368721 333 +    430880 agactctcaagcacggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgagacgggtggatcatgaggtcaggagatcgagaccatcctggctaacaaggtgaaaccccgtctctactaaaaa-tacaaaaaattagccgggcgcagtggcgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaagcggagcttgcagtgagccgacattgcgccactgcagtctgcagtccggcctgggcgacagagtgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
s colAng1.NW_012117110v1        73463 313 -   1784207 --------------ggccaggcacggtggctcaagactgtaatcccagcactttgggaggccgagacgggcggattacgaggtcaagagatcgagaccatcctggctaacacagtgaaaccctgtctctactaaaaaatacaaaaaactagccgggcgaggtggcgggtgcctgtagtcccagctacatgggaggctgaggcaggagaatggcgtaaacccgggaggcggagcttgcagtgagctgagatccggccactgcactc-------cagcctgggcgacagagcgagactccgtctcaaaaaaaataaataaataaataaataaaata
i colAng1.NW_012117110v1    C 0 C 0
e aotNan1.NW_018505940v1     40676202 1770 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22275817 1868 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e cebCap1.NW_016107610v1       649252 2144 -   2910086 I
e otoGar3.GL873530             667290 414 -  36342412 I
e panPan2.chr15              80479213   0 +  99763055 C
e manLeu1.NW_012106908v1        57073 9065 -   1397330 I
e chlSab2.chr29              21134324 1449 -  24206276 I
e cerAty1.NW_012002657v1        53746 1447 -   1987038 I
e macNem1.NW_012011945v1        58142 1470 -   2311642 I
e macFas5.chr7              108444772 1456 - 171882078 I
e rheMac8.chr7               60918038 1459 + 169600520 I
e nomLeu3.chr6               17238923   0 - 121039945 C
e saiBol1.JH378108           50506188 2230 +  54856640 I
e gorGor5.CYUI01015556v1        79395   0 -   1709092 C
e panTro5.chr15              63522135   0 +  83230942 C

a score=-283.000000
s hg38.chr15_KI270850v1_alt    369054 3 +    430880 aaa-
s macFas5.chr7              108446228 3 - 171882078 -aac
i macFas5.chr7              I 1456 C 0
s colAng1.NW_012117110v1        73776 3 -   1784207 aaa-
i colAng1.NW_012117110v1    C 0 I 47
e aotNan1.NW_018505940v1     40676202 1770 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22275817 1868 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e cebCap1.NW_016107610v1       649252 2144 -   2910086 I
e otoGar3.GL873530             667290 414 -  36342412 I
e panPan2.chr15              80479213 0 +  99763055 C
e manLeu1.NW_012106908v1        57073 9065 -   1397330 I
e chlSab2.chr29              21134324 1449 -  24206276 I
e cerAty1.NW_012002657v1        53746 1447 -   1987038 I
e macNem1.NW_012011945v1        58142 1470 -   2311642 I
e rheMac8.chr7               60918038 1459 + 169600520 I
e nomLeu3.chr6               17238923 0 - 121039945 C
e saiBol1.JH378108           50506188 2230 +  54856640 I
e gorGor5.CYUI01015556v1        79395 0 -   1709092 C
e panTro5.chr15              63522135 0 +  83230942 C

a score=51535.000000
s hg38.chr15_KI270850v1_alt    369057 10 +    430880 aaaagactct
s panTro5.chr15              63522135 10 +  83230942 aaaagactct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80479213 10 +  99763055 aaaagactct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        79395 10 -   1709092 aaaagactct
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17238923 10 - 121039945 aaaagactct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60919497 10 + 169600520 aaaagactct
i rheMac8.chr7              I 1459 C 0
s macFas5.chr7              108446231 10 - 171882078 aaaagactct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        59612 10 -   2311642 aaaagactct
i macNem1.NW_012011945v1    I 1470 C 0
s cerAty1.NW_012002657v1        55193 10 -   1987038 aaaagactct
i cerAty1.NW_012002657v1    I 1447 C 0
s manLeu1.NW_012106908v1        66138 10 -   1397330 aaaagactct
i manLeu1.NW_012106908v1    I 9065 C 0
s colAng1.NW_012117110v1        73826 10 -   1784207 aaaagactct
i colAng1.NW_012117110v1    I 47 C 0
e aotNan1.NW_018505940v1     40676202 1770 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22275817 1868 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e cebCap1.NW_016107610v1       649252 2144 -   2910086 I
e otoGar3.GL873530             667290 414 -  36342412 I
e chlSab2.chr29              21134324 1449 -  24206276 I
e saiBol1.JH378108           50506188 2230 +  54856640 I

a score=253374.000000
s hg38.chr15_KI270850v1_alt    369067 43 +    430880 caagcacaaaatattacattaagataaaactcagcgggagaag
s panTro5.chr15              63522145 43 +  83230942 caagcacaaaatattacattaagataaaactcagcgggagaag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80479223 43 +  99763055 caagcacaaaatattacattaagataaaactcagcgggagaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        79405 43 -   1709092 caagcacaaaatattacattaagataaaactcagcaggagaag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17238933 43 - 121039945 caagcacaaaatattacattaggataaaactcagcgggagaag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60919507 43 + 169600520 caagcacaaaatattacgttaggataaaactcagcaggagaag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108446241 43 - 171882078 caagcacaaaatattacgttaggataaaactcagcaggagaag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        59622 43 -   2311642 caagcacaaaatattacgttaggataaaactcagcaggagaag
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        55203 43 -   1987038 caagcacaaaatattacgttaggataaaactcagcaggagaag
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21135773 43 -  24206276 caagcacaaaatattacgttaggataaaactcagcaggagaag
i chlSab2.chr29             I 1449 C 0
s manLeu1.NW_012106908v1        66148 43 -   1397330 caagcacaaaatattacgttaggataaaactcagcaggagaag
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        73836 43 -   1784207 caagcataaaatattacattaggataaaactcagcaggagaag
i colAng1.NW_012117110v1    C 0 C 0
e aotNan1.NW_018505940v1     40676202 1770 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22275817 1868 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e cebCap1.NW_016107610v1       649252 2144 -   2910086 I
e otoGar3.GL873530             667290 414 -  36342412 I
e saiBol1.JH378108           50506188 2230 +  54856640 I

a score=1920821.000000
s hg38.chr15_KI270850v1_alt    369110 338 +    430880 tggactacaaatactaggagaaaagaaa------taatgggccaggcgc----ggtggctcacacctgtaatcccag----cacattgggaggccaaggcaggcggataatgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccttctct---actaaaaatactaaaaattagctgggcatggtgccacgtgcctgtagtcccagttgctcgagaggctgaggcagaagaatcgcttgaaactgggaggcggaggttgcagtgagctgagatcatgccactgcactccagcctggagacagagcaagactctgtcttaaaaaaaaaaaaa--------------aaga--agaag--aag
s panTro5.chr15              63522188 342 +  83230942 tggactacaaatactaggagaaaagaaa------taatgggccaggcgc----ggtggctcacgcctgtaatcccag----cacattgggaggccaaggcgggcggataatgaggtcaagagatcgagaccatcctggccaacatggtgaaacctcttctct---actaaaaatactaaaaattagctgggcatggtgccacgtgcctgtagtcccagttgctcgagaggctgaggcagaagaatcgcttgaaactgggaggcggaggttgcagtgagctgagatcacgccactgcactccagcctggagacagagcaagactctgtcttgaaaaaaaaaaaa----------gaagaaga--agaag--aag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80479266 340 +  99763055 tggactacaaatactaggagaaaagaaa------taatgggccaggcgc----ggtggctcacgcctgtaatcccag----cacattgggaggccaaggcgggcggataatgaggtcaagagatcgagaccatcctggccaacatggtgaaacctcttctct---actaaaaatactaaaaattagctgggcatggtgccacgtgcctgtagtcccagttgctcgagaggctgaggcagaagaatcgcttgaaactgggaggcggaggttgcagtgagctgagatcacgccactgcactccagcctggagacagagcaagactctgtcttaaaaaaaaaaaag--------------aagaagagaag--aag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        79448 340 -   1709092 tggattacaaatactaggagaaaagaaa------taatgggccaggcgc----ggtggctcacgcctgtaatcccag----cacattgggaggccaaggcgggcggataatgaggtcaagagatcgagaccatcctggccaacacggtgaaaccccttctct---actaaaaatactaaaaattagctgggcatggtggcacgtgcctgtagtcccagttgctcgagaggctgaggcagaagaatcgcttgaaactgggaggcggaggttgcagtgagctgagatcacgccactgcactctagcctggagacagagcaagactctgtcttaaaaaaaaaaaaa------------aaaaga--agaag--aag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17238976 351 - 121039945 tggactacaaatactaggagaaaagaaa------taatgggccaggcac----ggtggcttacgcctgtaatcccag----cactttgggaggccaaggcgggcggatcacgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccttctct---actaaaaatactaaaaattagctggatatggtagcacacgcctgtagtcccagttgctcaagaggctgaggcagaagaatcacttgaacctgggaggcagaggttgcagtgagctgagatcgcgccactgcactccagcctggagacaaagcaagactctgtcttaaaaaaaaaaaaaaaaaaaa-aaaaagaaga--agaag--aag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60919550 350 + 169600520 tggactacaaatactagtagaaaagaaa------taatgggccaggcgt----ggtggctcacgcctgtaatcccag----cactttgggaggctgaggtgggcagatcacgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccttctgt---actaaaaacactaaaaattagctggacgtggtggtgcgcacctgtagtcccagttgctcgagaggctgaggcaggagaatcgcttgaacctggaaggcagaggttgcagtgagctgagatcgcgccactgcactccagcctggcaacagggcaagattctcactcaaaaaaaaaaaaaaaaaaaa-agaaggagga--agag---aaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108446284 351 - 171882078 tggactacaaatactagtagaaaagaaa------taatgggccaggcgt----ggtggctcacgcctgtaaccccag----cactttgggaggctgaggtgggcggatcacgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccttctgt---actaaaaacactaaaaattagctggacgtggtggtgcgcacctgtagtcccagttgctcgagaggctgaggcaggagaatcgcttgaacctggaaggcagaggttgcagtgagctgagatcgcgtcactgcactccagcctggcaacagggcaagattctcactcaaaaaaaaaaaaaaaaaaaa-agaaggagga--agagg--aaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        59665 351 -   2311642 tggactacaaatactagtagaaaagaaa------taatgggccaggcgt----ggtgattcacgcctgtaatcccag----cactttgggaggctgaggtgggcggatcacgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccttctgt---actaaaaacactaaaaattagctggacgtggtggcgcgcacctgtagtcccagttgctcgagaggctgaggcaggagaatcgcttgaacccggaaggcagaggttgcagtgagctgagatcgcgccactgcactccagcctggcaacagggcaagattctcactc--aaaaaaaaaaaaaaaagg-aggaggagga--agaggaaaaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        55246 318 -   1987038 tggactacaaatactagtagaaaagaaa------taatgggccaggcgt----ggtagctcacgcctgtaatcccag----cactttgggaggctgaggtgggcggatcacgaggtcaagagatcgagaccatcctggccaatatggtaaaaccccttctgt---actaaaaacactaaaaattagctggacgtggtggcgcgcacctgtagtcccagttgctcgagaggctgaggcaggagaatcgcttgaacccggaaggcagaggttgcagtgagctgagatcgcgccactgcactccagcctggcaacagggcaagattctcactcaa--------------------------------------aaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21135816 352 -  24206276 tggactacaaatactagtagaaaagaaa------taatgggctaggcgt----ggtggctcacgcctgtaatcccag----cactttgggaggctgaggtgggcggatcatgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccttctgt---actaaaaacactaaaaattagctggacgtggtggtgcgcacctgtagtcccagtcgctcgagaggctgaggcaggagaatcgcttgaacccagaaggcagaggttgcagtgagctgagatcacgccactgcactccagcctggcaacagggcaagattctccctcaaaaaaaaaaaaaaaaaaaaaaggaggagga--agagg--aaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        66191 348 -   1397330 tggactacaaatactagtagaaaagaaa------taatgggccaggcgt----ggtggctcacgcctgtaatcccag----cactttgggaggctgaggtgggcggatcacgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccttctgt---actaaaaacactaaaaattagctggacgtggtggcgtgcacctgtagtcccagttgctcgagaggctgaggcaggagaatcgcttgaacccggaaggcagaggttgcagtgagctgagatcgcgccactgcactccagcctggcaacagggcaagattctcactcaaaaaaaaaaaaaaaaaaaa----aggaggt--agagg--aaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        73879 343 -   1784207 tggactacaaatactagtagaaaagaaa------taatgggccaggcat----ggtggctcacacctgtaatcccag----cactttgggaggctgaggtgggcggatcacgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccttctgt---actaaaaacactaaaaattagctggacgtggtggcgtgcacctgtagtcccagttgctcgagaggctgaggcaggagaatcgcttgaacctggaaggcggaggttacagtgagctgagatcgcgccactgcactccagcctggcaacagggcaagatgctcgctcaaaaaaaaaaaa---------aggaggagga--ggagg--aaa
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873530             667704 332 -  36342412 TAAATCCCAAACAATTAAAAAAAAAAAAACTGGTTTATAggctgggcacagtgggtgggtcatgtctataaacctagcactcactcttggaggcagaggctggtggtgcttgagctcaggaattgtagaccagcctgagcaaaa--gcaagagctcgtctcttaaacaaaacaaaacaaaaactacctagacgtagtggcaggcacctgtagtcccagctacttgggaggctaaggcaagaggatcacttaagcccaaaaatttgagcttgctatgaac---aatgataccacagaac------------------aaagactctgtctccaaaaaaaaaaat--------------aaat--aaaTG--AAT
i otoGar3.GL873530          I 414 C 0
e aotNan1.NW_018505940v1     40676202 1770 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e calJac3.chr6               22275817 1868 + 158406734 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e cebCap1.NW_016107610v1       649252 2144 -   2910086 I
e saiBol1.JH378108           50506188 2230 +  54856640 I

a score=15947.000000
s hg38.chr15_KI270850v1_alt    369448 2 +    430880 aa
s panTro5.chr15              63522530 2 +  83230942 aa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80479606 2 +  99763055 aa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        79788 2 -   1709092 aa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17239327 2 - 121039945 aa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60919900 2 + 169600520 aa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108446635 2 - 171882078 aa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        60016 2 -   2311642 aa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        55564 2 -   1987038 aa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21136168 2 -  24206276 aa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        66539 2 -   1397330 aa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        74222 2 -   1784207 aa
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22277685 2 + 158406734 ag
i calJac3.chr6              I 1868 C 0
s saiBol1.JH378108           50508418 2 +  54856640 ag
i saiBol1.JH378108          I 2230 C 0
s otoGar3.GL873530             668036 2 -  36342412 AA
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1     40676202 1770 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e cebCap1.NW_016107610v1       649252 2144 -   2910086 I

a score=5238352.000000
s hg38.chr15_KI270850v1_alt    369450 544 +    430880 -----aaaa-----------gaaataatg-aaaagtttccccctgtt--aaagaactggtttaaatattttaaaataga-taataggtctc-aaatctctctactattgtaaatCTACAG-------TTTCAC-TTATAATAAAAATGTAGATACCAAGTTAAATATGCAAGGGGTACCCTGTACTAAAAAttttattgtggtaaaatatacatgaaatttaccactctaaccatttttgagcatacaattcagaggcatt-agtacattca--tatttttgtgcaagcatc-actactcttcacctctagagctttttttacgctaagctaaaattttgtaccattagacactaattcccc-actaccctc-tcctcctagcccctggttaccattattttactttgtctctatgaatttgactattgtagggacctt--gtaagtggaattatacaatatttttcctttgtatcaggcttatt-ttacttagca-taatgtcttcaaggttcctccatgt--tgcagtacgtCCCCAA-----tttct----------------------------------------ttt--ttt-------------tttttctttttttg-agacagggtctccttctgtc
s panTro5.chr15              63522532 545 +  83230942 -----aaaa-----------gaaataatg-aaaagtttccccctgtt--aaagaactggtttaaatattttaaaataga-taataggtctc-aaatctctctactattgtaaatCTACAG-------TTTCAC-TTATAATAAGAACGTAGATACCAAGTTAAATATGCAAGGGGTACCCTGTACTAAAAAttttgttgtggtaaaatatacatgaaatttaccactctaaccatttttgagcatacaattcagaggcatt-agtacattca--tatttttgtgcaagcatc-actactcttcacctctagagctttttttaccctaagctaaaattttgtaccattagacactaattcccc-actaccctc-tcctcctagcccctggttaccattattttactttgtctctatgaatttgactattgtagggacctc--gtaagtggaattatacaatatttttcctttgtatcgggcttatt-ttacttagca-taatgtcttcaaggttcctccatgt--tgcagtacatccccaa-----tttct----------------------------------------tttc-ttt-------------tttttttttttttg-agatagggtctccttctgtc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80479608 547 +  99763055 -----aaaa-----------gaaataatg-aaaagtttccccctgtt--aaagaactggtttaaatattttaaaataga-taataggtctc-aaatctctctactattgtaaatCTACAG-------TTTCAC-TTATAATAAGAACGTAGATACCAAGTTAAATATGCAAGGGGTACCCTGTACTAAAAAttttgttgtggtaaaatatacatgaaatttaccactctaaccatttttgagcatacaattcagaggcatt-agtacattca--tatttttgtgcaagcatc-actactcttcacctctagagctttttttaccctaagctaaaattttgtaccattagacactaattcccc-actaccctc-tcctcctagcccctggttaccattattttactttgtctctatgaatttgactattgtagggacctc--gtaagtggaattatacaatatttttcctttgtatcgggcttatt-ttacttagca-taatgtcttcaaggttcctccatgt--tgcagtacatccccaa-----tttct----------------------------------------tttctttc-------------tttttttttttttgtagacagggtctccttctgtc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        79790 539 -   1709092 -----aaaa-----------gaaataatg-aaaagtttccccctgtt--aaagaactggtttaaatattttaaaataga-taataggtctc-aaatctctctactattgtaaatCTACAG-------TTTCAC-TTATAATAAAAATGTAGATACCAAGTTAAATATGCAAGGGGTACCCTGTACTAAAAAttttattgtggtaaaatatacatgaaatttaccactctaaccatttttgagcatacaattcagaggcatt-agtacattca--tatttttgtgcaagcatc-actactcttcacctctagagctttttttaccctaagctaaaattttgtaccattagacactaattcccc-actaccctc-tcctcctagcccctggttaccattattttactttgtctctatgaatttgactattgtagggacctc--gtaagtggaattatacaatatttttcctttgtatcaggcttatt-ttacttagca-taacgtcttcaaggttcctccatgt--tgcagtacatccccaa-----tttct----------------------------------------ttt--------------------tttttttttttg-agacagggtctccttctgtc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17239329 539 - 121039945 -----aaaa-----------gaaataatg-aaaagttttcccctgtt------aactggtttacatagtttaaaataga-taataggtctcaaaATCTTTCTACTATTGCAAATCTACAG-------TTTCAC-TTATAATAAAAATGAAAATACCAAGTTAAATATGCAAGGGGTACCCTGTACTAAAAAtttttttgtggtaaaatatacatgaaatttaccactctaaccatttttgagcatacaattcaaaggcatt-agtacattca--tatttttgtgcaagcatc-actactcttcacctctagagctttttttaccctaagctaaaactttgtaccattagacactaattctcc-actatcctc-tcttcctagcccctggttaccattattttactttgtctctatgaatttgactattgtagggacctc--gtaagtggaattatacaatatttttcctttgtatcgggcttatt-ttacttagca-taatgtcttcaaggttcctccatgt--tgcagtaCATCCCCAA-----tttct----------------------------------------ttt----t-------------tttttttttttttg-agacagggtctccttcagtc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60919902 538 + 169600520 -----aaaa-----------gaaataatg-aaa----tttccccatt--aaagaactggtttacatattttaaaataga-taataggtatc-aaacctctctactattgtaaatCTACAG------TTTTCAC-TTATAATAAAAATGTAGATACCAAGTTAAATACATAAGGGGTACCCTGTACTAAAAAttttattgtggtaaaatatacatgaagtttaccactctaaccatttctgagcatacaattcagaggcact-agtacattca--tacttttgtgcaaacatc-accactattcacctctagagctttttttaccctaagctaaaactttgtaccattagacactaattcccc-actaccctc-tcctcctggatcctggttagcattattttaccttgtctctatggatttgactattgtagggacctc--gtaagtggaattatacaatatttttcctttgtatcaggcttatt-ttacttagca-taacgtcttcaaggttcctccatgt--tatagtacatccccaa-------ttt----------------------------------------ttt---tt-------------tttttttttttttg-agacagggtatccttctgtc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108446637 545 - 171882078 -----aaaa-----------gaaataatg-aaa----tttccccgtt--aaagaactggtttacatattttaaaataga-taataggtatc-aaacctctctactattgtaaatCTACAG------TTTTCAC-TTATAATAAAAATGTAGATACCAAGTTAAATACATAAGGGGTACCCTGTACTAAAAAttttattgtggtaaaatatacatgaagtttaccactctaaccatttctgagcatacaattcagaggcact-agtacattca--tacttttgtgcaaacatc-accactattcacctctagagctttttttaccctaagctaaaactttgtaccattagacactaattcccc-actaccctc-tcctcctggctcctggttagcattattttaccttgtctctatggatttgactattgtagggacctc--gtaagtggaattatacaatatttttcctttgtatcaggcttatt-ttacttagca-taacgtcttcaaggttcctccatgt--tatagtacatccccaatttttttttt----------------------------------------ttt---tt-------------tttttttttttttg-agacagggtatccttctgtc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        60018 540 -   2311642 -----aaaa-----------gaaataatg-aag----tttccccgtt--aaagaactggtttacatattttaaaataga-taataggtatc-aaacctctctactattgtaaatCTACAG------TTTTCAC-TTATAATAAAAATGTAGATACCAAGTTAAATACATAAGGGGTACCCTGTACTAAAAAttttattgtggtaaaatatacatgaagtttaccactctaaccatttctgagcatacaattcagaggcact-agtacattca--tacttttgtgcaaacatc-accactattcacctctagagctttttttaccctaagctaaaactttgtaccattagacactaattcccc-actaccctc-tcctcctggctcctggttagcattattttaccttgtctctatggatttgactattgtagggacctc--gtaagtggaattatacaatatttttcctttgtatcaggcttatt-ttacttagca-taacgtcttcaaggttcctccatgt--tatagtacatccccaa-----ttttt----------------------------------------ttt---tt-------------tttttttttttttg-agacagggtatccttctgtc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        55566 545 -   1987038 -----aaaa-----------aaaataatg-aag----tttccccgtt--aaagaactggtttacatattttaaaataga-taataggtatc-aaacctctctactattGTAAATCTACAG------TTTTCAC-TTATAATAAAAATGTAGATACCAAGTTAAATACATAAGGGGTACCCTGTACTAAAAAttttattgtggtaaaatatacaagaagtttaccactctaaccatttctgagcatacaattcagaggcatt-agtacattca--tacttttgtgcaaacatc-accactattcacctctagagctttttttaccctaagctaaaactttgtaccattagacactaattcccc-actaccctc-tcctcctggctcctggttagcattattttaccttgtctctatggatttgactattgtagggacctc--gtaagtggaattatacaatatttttcctttgtatcaggcttatt-ttatttagca-taacgtcttcaaggttcctccatgttatatagtacatccccaa--tttttttt----------------------------------------ttt---tt-------------tttttttttttgtg-agacagtgtatccttctgtc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21136170 564 -  24206276 -----aaaaaaagaaataatgaagtaatg-aag----tttccccgtt--aaagaactggtttacatattttaaaataga-taataggtatc-aaacctctctactattataaatCTACAG------TTTTCAC-TTACAATAAAAATGTAGATACCAAGTTAAATACATAAGGGGTACCCTGTACTAAAAAttttattgtggtaaaatatacatgaagtttaccactctaaccatttctgagcatacaattcagaggcatt-agtacattca--tacttttgtgcaaacatc-accactattcacctctagag-tttttttaccctaagctaaaactttgtaccattagacactaattccccaactgtcctc-tcctcttggctcctggttagcattattttaccttttctctatggatttgactattgtagggacctc--gtaagtggaattatacaatatttttcctttgtatcaggcttatt-ttacttagca-taacgtcttcaaggttcctccatgt--tatagtacatccccaa-----ctttt----------------------------------------ttt---ttttaactttttaaatttttttttttttg-agacagggtatccttctgtc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        66541 538 -   1397330 -----aaaa-----------gaaataatg-aag----tttccccgtt--aaagaactggtttacatattttaaaataga-taataggtatc-aaacctctctactattGTAAATCTACAG------TTTTCAC-TTATAATAAAAATGTAGATACCAAGTTAAATACATAAGGGGTACCCTGTACTAAAAAttttattgtggtaaaatatacaagaagtttaccactctaaccatttctgagcatacaattcagaggcatt-agtacattca--tacttatgtgcaaacatc-accactattcacctctagagctttttttaccctaagctaaaactttgtaccattagacactaattcccc-actaccctc-tcctcctggctcctggttagcattattttaccttgtctctatggatttgactattgtagggacctc--gtaagtggaattatacaatatttttcctttgtatcaggcttatt-ttacttagca-taacgtcttcaaggttcctccatgttatatagtacatccccaa-----ttttt----------------------------------------t--------------------tttttttttttttg-agacagggtatccttctgtc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        74224 533 -   1784207 -----aaaa-------------aattatg-aag----tttccccatc--aaagaactggtttacatattttaaaataga-tactaagtatc-aaatctctctactattgtaaatCTACAG------TTTTCAC-TTATAATAAAAATGTAGATACCAAGTTAAATACGTAAGGGGTACCCTGTACTAAAAAttttattgtggtaaaatatacatgaaatttaccactctaaccatttttgagcatacaattcagaggcatt-agtacattcg--tacttttgtgcaagcatc-accactattcacctctaaagctttttttaccctaagctaaaactttgtaccattagacactaattcccc-actaccctc-tcctcctggctcctggttagcattattttactttgtctctatgaatttgactattgtagggacctc--gtaagtggaattatacaatatttttcctttgtatcaggcttatt-ttacttagca-taacatcttcaaggttcctccatgt--tatagtacatccccag--------------------------------------------------ttt---tt-------------tttttttttttttg-agacagggtatccttttgtc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22277687 532 + 158406734 -----aaaa-----------gaaataata-aaaagtttcccactatt--aaataattggtttacatattttaaaataga-taataggtgtc-aaa----tctactattgtaAA--T---G------TTTCCAC-TTATAATAAAAATGTAGATACCAAGTTAAATATGCAAGGGGTACACTGTACTAAATAATt---tgtggtaaaatatacatgaaatttaccattctaatcatttttgcacatacaattcagaggcatt-agtacattca--catttttgtgcaaccatc-accactattcacctcgagtgctttttttaccctaagctaaaactttgtaccattagacattaattcccc-actaccctc-tcctcctagaccctggttaccattattttacttcgtctcaatacatttgactatcgtagggacctc--gtatgtgaaatcatacagtatttgtcctttgtatcaggcttatt-ttacttagca-taacaccttcaagattcatccatgt--tgtagtacgtcccccc-----accct----------------------------------------ttt---tt-------------tttttttttttttg-agacagggtctccttctgcc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50508420 581 +  54856640 -----aaaa-----------caaataatagaaaagtttcccactatttaaaagaactggtttacatattttaaaatagattagtaggtgtc-aaa----tctatgatTGTAAATCT---G------TTTCCAC-TTATTAAAAAAATGTACATACCAAGTTAAGTATGCAAGGGGTACACTGTACTAAAAAttttactgtggtaaaatacacatgaaatttaccattctaatcatttttgcacatacaattcagaggcatt-agtatattca--catttttgtgcaaccatt-accactattcacctcgagagctttttttaccctaagctaaaactttgtaccattagacaccaattcccc-actaccctc-tcctcctagaccctggttaccattgttttactttgtctctataaatttgactatcatagggacctc--gtaagtggaatcatacagtatttgtcctttgtatcaggcttatt-ttacttagca-taacaccttcaaggttcatccacgt--tgtggtacgtccccct-----accctgttttttttttttttttttttttgagacagggttaaagtcttt---tt-------------tttttttttttttg-agacagggtatccttctgcc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       651396 527 -   2910086 -----aaaa-----------gaaataata-aaaagtttcccactatt--aaagaac-ggtttacatattttaaagtaga-taataggtgtc-aaa----tctactatTATAAA--T---G------TTTCCAC-TTATAATAAAAATGTAGATACCAAGTTAAATATGCAAGGGGTGCACTGTACTAAAAAttttactgtggtaaaatatacatgaaatttaccattctaatcatttttgcacatacaattcagaggcatt-agtacattca--tatttttgtgcaaccatc-accactattcacctcgagagctttttttaccctaagctaaaactttgtaccattagacattaattcccc-actaccctc-tcctcctaggccctggttaccattattttactttgtctctataaatttgactatcgtaggtacctc--gtaagtataatcatatagtatttgtcctttgtatcaggtttatt-ttacttggca-taacaccttcaaggttcatccatgt--tgtagtacgtccccac-----ctccc---------------------------------------------------------------cttttttttttg-agacagggtctccttctgcc
i cebCap1.NW_016107610v1    I 2144 C 0
s aotNan1.NW_018505940v1     40677972 524 +  42888418 -----aaaa-----------gaaataata---aagtttcccactatt--aaagaactcgttaacatattttaaaataga-taataggggtc-aaa----tctactattgtaAATCT---G------TTTCCACTTTTTAATAAAAATGTAGATACCAAGTTAAATATGCAAGGGGTACACTGTACTAAAAAttttactgtggtaaaatatacatgaaatttaccattctaatcatttttgcacatacaattcacagacatt-agtacattca--tatttttgtgcaaccatc-accactattcacctcgagagctttttttaccctaagctaaaactttataccattagacattaattcccc-actaccctc-tcctcctagaccctggttaccattattttactttgtctctataaatttgactatcgtagggacctc--gtaagtggaatcatacagtatttgtcctttgtatcaggcttatt-ttac--agcattaacaccttcaaggttcatccatgt--tgtagtacgtcccc---------ccc---------------------------------------------------------------tttttttttttg-agacagggtctccttctgcc
i aotNan1.NW_018505940v1    I 1770 C 0
s otoGar3.GL873530             668038 525 -  36342412 AATCCAAGA-----------GAAAC--TA-AAA-------------T--CAAAAACTGGTTTACACATTTTTAAATAGA-TAACAGGTATT-GTATCTCTTCACTACAGCAAATCCACTGAATACATTTTCAC-TCATGATGAAAATTTAGATATCAAG-----TGTGTGAGAGGTACAATGTTTTAAG-Attttattgtagtaaaacatacataaaagctaccactttaaacaatt-tacacatacaattcagaggcattaagcacagtcatttttttttgtgcagtcatctactactattcatttccagaac-ttcttcatcccaaactaaggctccacaccattaaacactaactcccc-aataccctcgtccttctagctcttggtaaccactattttactttgtcttcatgaatttgtccattctagggacctcatataagtagaatcaaacaatatttgtcctttgtgcctggcttactgttactcagca-t---gtatttaaggttcacctttgc--agtagcaggtatcaaa-----atttt----------------------------------------cttcctttttcagg-------ttTAttttttttt----------------------
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I

a score=1232404.000000
s hg38.chr15_KI270850v1_alt    369994 128 +    430880 acccaggttgggatgcaatgacgcaataatggctcactacagcctcagcct-cccaggatcaagcagtcctcccacctcagcctctaaagtagatgggaccacaggtgcatgtcaccagcctggctaaa
s panTro5.chr15              63523077 128 +  83230942 acccaggttgggatgcaatgatgcaataatggctcactacagcctcagcct-cccaggatcaagcaatcctcccacctcagcctctaaagtagatgggaccacaggtgcatgtcaccagcctggctgaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80480155 128 +  99763055 acccaggttgggatgcaatgatgcaataatggctcactacagcctcagcct-cccaggatcaagcaatcctctcacctcagcctctaaagtagatgggaccacaggtgcatgtcaccagcctggctgaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        80329 128 -   1709092 acccaggttgggatgcaatgacgcaataatggctcactacagcctcagcct-cccagaatcaagcaatcctcccacctcagcctctaaagtagatgggaccacaggtgcatgtcaccagcctggctaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17239868 128 - 121039945 acccaggttgggatgtaatgacacaataatggctcactacagcctcagcct-cccaggatcaagaaatcctcccacctcagcctctaaagtagatgggaccacaggtgcatgtcaccagcctggctaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60920440 128 + 169600520 acccaggttgggacgcagtggcgcaataacggttcactaccacctcagcct-cccaggatcaagcaatcgtcccacctcagcttctcaagtagctgggaccacagatgcatgttaccagcctggctaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108447182 128 - 171882078 acccaggttgggacgcagtggcgcaataatggctcactaccacctcagcct-cccaggatcaagcaatcgtcccacctcagcttctcaagtagctgggaccacagatgcatgttaccagcctggctaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        60558 128 -   2311642 acccaggttgggacgcagtggcgcaataatggctcactacaacctcagcct-cccaggatcaagcaatcatcccacctcagcttctcaagtagctgggaccacagatgcatgttaccagcctggctaaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        56111 128 -   1987038 acccaggttgggacgcagtggcgcaataacggctcactacaacctcagcct-cccaggatcaagcaatcgtcccacctcagcttctcaagtagctgggaccacagatgcatgttaccagcctggctaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21136734 128 -  24206276 acccaggttgggacgcagtggcgcaataacggctcactacaacctcagcct-cccaggatcaagcaatcgtcccacctcagcttctcaagtagctgggaccacagatgcatgttaccagcctggctaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        67079 128 -   1397330 acccaggttgggacgcagtggcgcaataacggctcactacaacctcagcct-cccaggatcaagcaatcgtcccacctcagcttctgaagtagctgggaccacagatgcatgttaccagcctggctaaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        74757 128 -   1784207 acccaggctgggatgcagtggcgcaataacggctcactacaacctcagcct-cccaggatcaagcaattgtcccacctcagcctcttaagtagctgggaccacagatgcatgttaccagcctggctaaa
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22278219 129 + 158406734 atccaggctaggatgcagtggcacaataacagctcactgcagccttggtctccctagcatcaagtaatcctcccatctcagcctctcaagtagctgggaccacaggtgcatgtcaccagcctggctaca
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50509001 129 +  54856640 acccaggctaggatgcagtggcacaataatggctcactgcagccttggtcttcccagcatcaagtaatcctcccacctcagcctctcaagtagctgggaccacaggtgcatgtcaccagcctgcctaaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       651923 129 -   2910086 acccaggctaggatgcagtggcacagtaacggctcactgcagccttggtctccccagcatcaactaatcctcccacctcagtctctcaagcagctgggaccacaggtgcatgtcaccagcctggctaaa
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40678496 129 +  42888418 acccaggctaggatgcagtggcataataacgactcactgcagccttggtctccccagcattaagtaatcctcctacctcagcctctcaagtagctgggaccacaggtgcatgtcaccagcctggctaaa
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e otoGar3.GL873530             668563   0 -  36342412 C

a score=136632.000000
s hg38.chr15_KI270850v1_alt    370122 11 +    430880 tttttagagat
s panTro5.chr15              63523205 11 +  83230942 tttttagagat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80480283 11 +  99763055 tttttagagat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        80457 11 -   1709092 tttttagagat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17239996 11 - 121039945 tttttagagat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60920568 11 + 169600520 tttttagagat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108447310 11 - 171882078 tttttagagat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        60686 11 -   2311642 tttttagagat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        56239 11 -   1987038 tttttagagat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21136862 11 -  24206276 tttttagagat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        67207 11 -   1397330 tttttagagat
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        74885 11 -   1784207 tttttagagat
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22278348 11 + 158406734 tttttagagat
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50509130 11 +  54856640 tttttagagat
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       652052 11 -   2910086 tttttagagat
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40678625 11 +  42888418 tttttagagat
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             668563 11 -  36342412 tttttagagac
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I

a score=1207307.000000
s hg38.chr15_KI270850v1_alt    370133 135 +    430880 ggaagtctccccatgttgcccaggctgttgctgaacctctgggctcaagtgatccacccacctaggcctcccaaagtgctggaattacaggcatgagccaatgcctggcatgcatg----cattcattcattcaCTgat
s panTro5.chr15              63523216 135 +  83230942 ggaagtctccccatgttgcccaggctgttgctcaacttctgggctcaagcgatccacccacctaggcctcccaaagtgctggaattacaggcatgagccaatgcctggcatgcatg----cattcattcattcactgat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80480294 135 +  99763055 ggaagtctccccatgttgcccaggctgttgctcaacttctgggctcaagcgatccacccacctaggcctcccaaagtgctggaattacaggcatgagccaatgcctggcatgcatg----cattcattcattcactgat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        80468 139 -   1709092 ggaagtctccccatgttgcccaggctgttgctgaacttctggactcaagcgatccacccacctaggcctcccaaagtgctggaattacaggcacgagccaatgcctggcatgcatgcattcattcattcattcactgat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17240007 135 - 121039945 ggaagtctccctatgttgcccaggctgttgctgaacttctgggctcaagcgatccacccacctaggcctcccaaagtgctggaattacaggcatgagccaatgcctggcATGCATG----TATTCATTCATTCATTGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60920579 132 + 169600520 agaggtctccctgtgttgcccaggctgttg---aacttccgggctcaagcgatccacccgcctaggcctcccaaagtgctggaattacaggcatgagccactgcctggcatgcatg----ccttgattcattcactgat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108447321 132 - 171882078 agaggtctccctgtgttgcccaggctgttc---aacttccgggctcaagcgatccacccgcctaggcctcccaaagtgctggaattacaggcatgagccactgcctggcatgcatg----cattgattcattcactgat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        60697 132 -   2311642 agaggtctccctgtgttgcccaggctgttg---aacttccgggctcaagcgatccacccgcctaggcctcccaaagtgctggaattacaggcatgagccactgcctggcatgcatg----cattgattcattcactgat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        56250 132 -   1987038 agaggtctccctgtgttgcccaggctgttg---aacttccgggctcaagcgatccacccgcctaggcctcccaaagtgctggaattacaggcatgagccactgcctggcatgcatg----cattgattcattcactgat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21136873 132 -  24206276 agaggtctccctgtgttgcccaggctgttg---aacttccgggctcaagcgatccacccgcctaggcctcccaaagtgctggaattacaggcatgagccactgcccggcatgcatg----cattgattcattcactgat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        67218 132 -   1397330 agaggtctccctgtgttgcccaggctgttg---aacttccgggctcaagcgatccacccgcctaggcctcccaaagtgctggaattacaggcatgagccactgcctggcatgcatg----cattgattcattcactgat
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        74896 132 -   1784207 agaggtctccctgtgttgcccaggctgctg---aacttccgggctcaagcgatccacccgcctaggcctcccaaagtgctggaattacaggcatgagccactgcccggcatgcatg----cattgattcattcattgat
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22278359 126 + 158406734 gggggtctccttatgttgtccaggctgttgttgaactcctgggatcaagcggtccacctgcctaggcctcccaaagtgctggaactatagggatgagccacttccctgca-------------tcattcactcattgac
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50509141 135 +  54856640 gagggtctccttatgctgcccaggctgttgttgaactcctgggatcaagcgatccacctgcttaggcctcccaaagtgttggaactatagggatgagccactgcCCTGcattcatt----cattcattcattcattgac
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       652063 127 -   2910086 gggggtctccttatgctgcccaggctgttgttgaactcctgggatcaagcaatccacctgcctaggcctcccaaagtgctggaactatagggatgagccactgcccagca------------ttcattcattcattgac
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40678636 127 +  42888418 ggaggtctccttatgttgcccaggctgttggtgaactcctgcgatcaagcgatccacctgcctaggcctctcaaagtgctggaactatagggatgagccactgcccagca------------ttcattcattcattgac
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I
e otoGar3.GL873530             668574   0 -  36342412 C

a score=405308.000000
s hg38.chr15_KI270850v1_alt    370268 41 +    430880 aggattttgctatgttgtccaggctggccccaaactcctg-g
s panTro5.chr15              63523351 41 +  83230942 aggattttgctatgttgcccaggctggccccaaactcctg-g
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80480429 41 +  99763055 aggattttgctatgttgcccaggctggccccaaactcctg-g
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        80607 41 -   1709092 aggattttgctatgttgcccaggctggccccaaactcctg-g
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17240142 39 - 121039945 AGGATTCTGC--tgttacccaggctggccccaaactcctg-g
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60920711 41 + 169600520 aggattttgctatgttgcccaggctgtccccaaatcccta-g
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108447453 41 - 171882078 aggattttgctatgttgcccaggctgtccccaaatcccta-g
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        60829 41 -   2311642 aggattttgctatgttgcccaggctgtccccaaatcccta-g
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        56382 41 -   1987038 aggattttgctatgttgcccaggctgtccccaaatccctg-g
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21137005 41 -  24206276 aggattttgctatgttgcccaggctgtccccaaatccctg-g
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        67350 41 -   1397330 aggattttgctatgttgcccaggctgtccccaaatccctg-g
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        75028 41 -   1784207 aggattttgctatgttgcccaggctgtccccaaacccctg-g
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22278485 40 + 158406734 aggattttgctatgttgcccaggctggccccagactcctg--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50509276 40 +  54856640 aggattttgctacgatgcccaggctggccccagactcctg--
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       652190 40 -   2910086 tggattttgctatattgcccaggctggccccagactcctg--
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40678763 41 +  42888418 aggattttgctatgttgcccaggctgaccccagactcctgc-
i aotNan1.NW_018505940v1    C 0 I 13
s otoGar3.GL873530             668574 41 -  36342412 agggtcttgctatgttgcccaggctggtctctaattagag-g
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I

a score=101492.000000
s hg38.chr15_KI270850v1_alt    370309 19 +    430880 gctcaaatgatccttcctt
s panTro5.chr15              63523392 19 +  83230942 gctcaaatgatccttcctt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80480470 19 +  99763055 gctcaaatgatccttcctt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        80648 19 -   1709092 gctcaaatgatccttcctt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17240181 15 - 121039945 gctcaaatga----tcctt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60920752 19 + 169600520 gctcaaatgatccttcctt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108447494 19 - 171882078 gctcaaatgatccttcctt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        60870 19 -   2311642 gctcaaatgacccttcctt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        56423 19 -   1987038 gctcaaatgatccttcctt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21137046 19 -  24206276 gctcaaatgatccttcctt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        67391 19 -   1397330 gctcaaatgatccttcctt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        75069 19 -   1784207 gctcaaatgatccttcctt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22278525 14 + 158406734 cctcactctatcct-----
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50509316 14 +  54856640 cctcactctatcct-----
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       652230 14 -   2910086 ccttactctatcct-----
i cebCap1.NW_016107610v1    C 0 C 0
s otoGar3.GL873530             668615 17 -  36342412 actcaagggttcctccc--
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1     40678804 13 +  42888418 I
e mm10.chr7                  81382146 10520 + 145441459 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I

a score=492248.000000
s hg38.chr15_KI270850v1_alt    370328 47 +    430880 gcctcacc--ctc-tcgagtagctgggactacaggtgtgc--actactgtgc
s panTro5.chr15              63523411 47 +  83230942 gcctcacc--ctc-tcgagtagctgggactacaggtgtgc--actactgtgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80480489 47 +  99763055 gcctcacc--ctc-tcgagtagctgggactacaggtgtgc--actactgtgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        80667 47 -   1709092 gcctcacc--ctc-tcgagtagctgggactacaggtgtgc--actactgtgc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17240196 47 - 121039945 gcctcacc--ctc-tcaagtagctgggactacaggtgtgc--actactgtac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60920771 47 + 169600520 gcctcacc--ctc-tcgagtagctggaactacaggtgtgc--accactgtgc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108447513 47 - 171882078 gcctcacc--ctc-tcgagtagctggaactacaggtgtgc--accactgtgc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        60889 47 -   2311642 gcctcacc--ctc-tcaagtagctggaactacaggtgtgc--accactgtgc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        56442 47 -   1987038 gcctcacc--ctc-tcgagtagctggaactacaggtgtgc--accactgtgc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21137065 47 -  24206276 gcctcacc--ctc-tcgagtagctggaactacaggtgtgc--accactgtgc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        67410 47 -   1397330 gcctcacc--ctc-tcgagtagctggaactacaggtgtgc--accactgtgc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        75088 47 -   1784207 gcctcacc--ctc-tcaagtagctggaactacaggtgtgc--gccactgtgc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22278539 49 + 158406734 gcctcaaa--gtc-tcaagtagctgggactactggtgtgccagaaactgtgc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50509330 47 +  54856640 gcctcacc--ctc-tcaagtagctgggactatgggtgtgc--atcactgcgc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       652244 49 -   2910086 gcctcaccctctc-tcaagtagctgggactatgggtgtgc--accactgtgc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40678817 47 +  42888418 gcctcacc--ctc-tcaagtagctgggactatgggtgtgc--accactgtgc
i aotNan1.NW_018505940v1    I 13 C 0
s otoGar3.GL873530             668632 46 -  36342412 acctcagc--ctctttgagtagctggaactacaggcacgt--g--GCCATAT
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e dasNov3.JH570731            1830066 17148 +   3943991 I
e canFam3.chr3               54438760 3361 +  91889043 I

a score=3537840.000000
s hg38.chr15_KI270850v1_alt    370375 336 +    430880 taggtttcctttttAAAGCTC----CTAATTTTGCATCGtacacaacattttg-----------------------------------ttcatccatccaattcatccactgatgg-acacctgggttgtttcctgtttctaccttttgactattgtaaatagtactgttatgaacactagcatacaaa-tatgtgttcaagtcctcgctttcaattcttttgtgtgtatacctagaaggagaattgctggatcatatggtaacactatgtttaatttttttt-ggaagcaccacactc-ttttccccagcagcagtaccattttacattcccaccagcaatgcacaaatgttctaatttctccatatccttgc-cgaca
s panTro5.chr15              63523458 337 +  83230942 caggtttcctttttaaaactc----ctaattttgcatcgtacacaacattttg-----------------------------------ttcatccatccaattcatccactgatgg-acacctgggttgtttcctgtttctaccttttgactattgtaaatagtactgttatgaacactagcatacaaa-tatgtgttcaagtcctcgctttcaattcttttgtgtgtatacctagaaggagaattgctggatcatatggtaatactatgtttaatttttttttggaagcaccacactc-ttttctccagcagcagtaccattttacattcccaccagcaatgcacaaattttctaatttctccatatccttgc-cgaca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80480536 336 +  99763055 caggtttcctttttaaaactc----ctaattttgcatcgtacacaacattttg-----------------------------------ttcatccatccaattcatccactgatgg-acacctgggttgtttcctgtttctaccttttgactattgtaaatagtactgttatgaacactagcatacaaa-tatgtgttcaagtcctcgctttcaattcttttgtgtgtatacctagaaggagaattgctggatcatatggtaatactatgtttaatttttttt-ggaagcaccacactc-ttttctccagcagcagtaccattttacattcccaccagcaatgcacaaattttctaatttctccatatccttgc-cgaca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        80714 334 -   1709092 caggtttcctttttaaagctc----ctaattttgcatcgtacacaacattttg-----------------------------------ttcatccatccaattcatccactgatgg-acacctgggttgtttcctgtttctaccttttgactattgtaaatagtactgttatgaacactagcatacaaa-tatgtgttcaagtcctcgctttcaattcttttgtgtgtatacctagaaggagaattgctggatcatatggtaattctatgtttaatttttttt-ggaagcaccaca--c-ttttccccagcagcagtaccattttacattcccaccagcaatgcacaaatgttctaatttctccatatccttgc-caaca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17240243 335 - 121039945 caggTttcctttttaaagctg----ctaattttgcatcatacacaacattttg-----------------------------------ttcatccatccaatttatccactgatgg-acacttgggttgtttcctgtttctaccttttgactattgtgaatagcactgttatgaacactagcatacaaa-tatgtgttcaagtcctcactttcaattcttttgtgtatatacctagaaggagaattgctggatcatatggtaattctatgtttaattttttt--ggaagcaccatactc-ttttccccagcagcagtaccattttacattcccaccagcaatgcacaaatgttctaatttctccatatccttgc-cgaca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60920818 329 + 169600520 caggtttcctttttaaag-------ctaattttgcattgtac---acatttta-----------------------------------ttcatccatccaattcatccactgatag-acagttgggttgtttcccatttctaccttttgactattgtgaatagtactgttatgaacactagcatacaaa-tatgtgttcaagtccttgctttcaattattttgtgtgtatacctagaaggggaattgctggatcatatggtaattctatgtttaatttttttt--gaagcaccatactc-ttttccccagcagcagtaccattttacatttccaccagcaatgcacaaatgttctaatttctccatatccttgc-cgaca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108447560 329 - 171882078 caggtttcctttttaaag-------ccaattttgcattgtac---acatttta-----------------------------------ttcatccatccaattcatccactgatag-acagttgggttgtttcccatttctaccttttgactattgtgaatagtactgttatgaacactagcatacaaa-tatgtgttcaagtccttgctttcaattattttgtgcgtatacctagaagtggaattgctggatcatatggtaattctatgtttaatttttttt--gaagcaccatactc-ttttccccagcagcagtaccattttacatttccaccagcaatgcacaaatgttctaatttctccatatccttgc-cgaca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        60936 329 -   2311642 caggtttcctttttaaag-------ctaattttgcattgtac---acatttta-----------------------------------ttcatccatccaattcatccactgatag-acagttgggttgtttcccatttctaccttttgactattgtgaatagtactgttatgaacactagcatacaaa-tatatgttcaagtccttgctttcaattattttgtgtgtatacctagaaggggaattgctggatcatatggtaattctatgtttaatttttttt--gaagcaccatactc-ttttccccagcagcagtaccattttacatttccaccagcagtgcacaaatgttctaatttctccatatccttgc-cgaca
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        56489 329 -   1987038 caggtttcctttttaaag-------ctaattttgcattgtac---acatttta-----------------------------------ttcatccatccaattcatccactgatag-acagttgggttgtttcccatttctaccttttgactattgtgaatagtactgttatgaacactagcatacaaa-tatgtgttcaagtccttgctttcaattattttgtgtgtatacctagaaggggaattgctggatcatatggtaattctatgtttaatttttttt--gaagcaccatactc-ttttccccagcagcagtaccattttacatttccaccagcaatgcacaaatgttctaatttctccatatccttgc-cgaca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21137112 330 -  24206276 caggtttcctttttaaag-------ctaattttgcattgtac---acatttta-----------------------------------ttcatccatccaattcatccactgatag-acagttgggctgtttcccatttctaccttttgactattgtgaatagtactgttacgaacactagcatacaaa-tatgtgttcaggtccttgctttcaattattttttgtgtatacctagaaagggaattgctggatcatatggtaattctatgtttaatttttttt--gaagcaccatactctttttccccagcagcagtaccattttacatttctaccagcaatgcacaaatgttctgatttctccatatccttgc-cgaca
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        67457 329 -   1397330 caggtttcctttttaaag-------ctaattttgcattgtac---acatttta-----------------------------------ttcatccatccaattcatccactgatag-acagttgggttgtttcccatttctaccttttgactattgtgaatagtactgttatgaacactagcatacaaa-tatgtgttcaagtccttgctttcaattattttgtgtgtatacctagaaggggaattgctggatcatatggtaattctatgtttaatttttttt--gaagcaccatactc-ttttccccagcagcagtaccattttacatttccaccagcaatgcacaaatgttctaacttctccatatccttgc-cgaca
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        75135 329 -   1784207 caggtttcctttttaaag-------ctaattttgcattgtac---acatttta-----------------------------------ttcatccatccaattcatccactgatag-acagtttggttgtttcccatttctaccttttgactattgtgaatagtactgttatgaacactagcatacaaa-tacgtgttcaagtccttgctttcaattattttgtgtgtatacctagaaggggagttgctggaccatatggtaattctatgtttaatttttttt--gaagcaccatactc-ttttccccagcagcagtatcattttacatttccaccagcaatgcacaaatgttctaatttctccatatccctgc-cgaca
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22278588 368 + 158406734 caggtttcctttttaaagctg----ctaatatttcattgttcataaca--ttgtttatccatccatccatccatccatccatccatcctccatccatccaattcatccactgatga-acatttgggttgtttcctctttctaccttttgactattgtgaacagtactgttatggacactaacatacaaattatatgttcaagtccttgctttcaattcttttct-tgtatacctggaaggagaactgctggatcatatggtaattctatgtttaattattttg--gaagcaccatacta-ttttccccaacagcagcaccactttacattttcaccagcaatgcacagatgttctaatttctccatatccttgc-cttca
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50509377 338 +  54856640 caggtttcctttttaaagctg----ctaatatttcaatgttcataacattttgttta-------------------------------tccatccatccaattcatccactgatgg-acatttgggttgtttcctctttc-accttttgactagtgtgaacagtactgttatgaaccctaacataaaaa-tatacgttcaagtcctcgctttcaattcttttctgtgtataccttgaaggagaattgctggatcatatggtaattctatgtttaattattttg--gaagcaccacacta-ttttccccagcagcagcaccattttacattttcaccagtaatgcacatatgttctaatttctccatatccttgc-ctaca
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       652293 347 -   2910086 caggtttcctttttaaagctg----ctaatatttcattgttcataacattttgtttatccatcca-----------------------tccatccatccaattcatccactgatgg-acatttgggttgtttcctctttctactttttgactgttgtgaacagtactgttatgaacactaacatacaaa-tatacgttcaagtcctcgctttcaattcttttctgtgtataccttgaaggagaattgctggatcatatggtaattctatgtttaattattttg--gaagcaccacacta-ttttccccagcagcagcaccattttacatttccatcagcaatgcacaaatgttctaatttctccatatccttgc-ctaca
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40678864 343 +  42888418 caggtttcctttttaaagctg----ctaatatttcattgttcataacattttgtttatcca---------------------------tcaatccatctaattcatccactgatgg-acatttgggttgtttcctctttctaccttttgactattgtgaacagtactgttatgaacactaacatacaaa-tatacgttcaagtcctcgctttcaatgcttttctgtgtataccttgaaggagaattgctggatcatatggtaattctatgtttaattattttg--gaagcaccatacta-ttttccccagcagcagcaccattttacatttccaccagcaatgcacaaatgttctaatttctccatatccttgc-ctaca
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             668678 317 -  36342412 CAGGTttcctttttaaggcca----gtaatattctactgtat---acattttg-----------------------------------tttgtcc-----attcatctgttcagagtacactcaggctg-------tttctaccctttg----ttttgaataatgcta-catgaacactggtgtacaag-tata--ttcaagtccctgctttcaattcttttgggcatatacttagaaacagaattgctgggtcatatggtaattctatgcttatttctttttaggaagcaccacacta-ttttccatagcagctgtactatttaaccttctcacaagtagcacccaaatgtttccatttctctagattcttgcataaca
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54442121 298 +  91889043 tatacttcctttttaaggctgaataatattcctacattgtatat-acattttg-----------------------------------tttatccactcaa-----ctgtcaatgg-ccatttgggttatttcc-------acgtgttgcctactgtgaaaagtacagctgtgaataccattgtacaaa-tatgggttcaattcc--------------tttatatatacacacatatacacacct-ctg------atggtaattctacatttaatatttttg-ggaaccaccatacag-ctttacatactggcagcactagttt-tattct-----atgatgcacaagtgttccaaattctccacatccttac---aca
i canFam3.chr3              I 3361 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e dasNov3.JH570731            1830066 17148 +   3943991 I

a score=677998.000000
s hg38.chr15_KI270850v1_alt    370711 69 +    430880 att--taca--------ttttaataa-----tggccatcctaacaa-gtgtaaactggtatct-cattgcggtGTACAT-------TTTTTTT------
s panTro5.chr15              63523795 69 +  83230942 att--taca--------ttttaataa-----tggccatcctaacaa-gtgcaaactggtatct-cattgtggtGTACAT-------TTTTTTT------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80480872 69 +  99763055 att--taca--------ttttaataa-----tggccatcctaacaa-gtgcaaactggtatct-cattgtggtGTACAT-------TTTTTTT------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        81048 74 -   1709092 att--tacatt---ttgttttaataa-----tggccatcctaacaa-gtgtaaactggtatct-cactgtggtGTACAT-------TTTTTTT------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17240578 74 - 121039945 att--tacatt---ttgttttaataa-----tggccatcctaacag-gtgtaaactggtatct-cattgtggtGTACAT-------TTTTTTT------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60921147 73 + 169600520 att--tatatt---ttgttttaataa-----tggccatcctaacag-gtgtaaactggtatct-cattgtggtgtaca--------tttttta------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108447889 73 - 171882078 att--tatatt---ttgttttaataa-----tggccatcctaacag-gtgtaaactggtatct-cattgtggtGTACA--------TTTTTTA------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        61265 73 -   2311642 att--tatatt---ttgttttaataa-----tggccatcctaacag-gtgtaaactggtatct-cattgtggtgtaca--------ttttttt------
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        56818 73 -   1987038 att--tatatt---ttgttttaataa-----tggccaacctaacag-gtgtaaactggtatct-cattgtggtgtaca--------ttttttt------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21137442 73 -  24206276 att--tctatt---ttgttttaataa-----tggccatcctaacag-gtgtaaactggtatct-cattgtagtGTACA--------TTTTTTT------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        67786 73 -   1397330 att--tatatt---ttgttttaataa-----tggccatcctaacag-gtgtaaactggtatct-cattgtggtgtaca--------ttttttt------
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        75464 73 -   1784207 att--tatatt---ttgttttaataa-----tggccatcctaacag-gtgtaaactggtatct-cattgtggtgtaca--------ttttttt------
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22278956 74 + 158406734 att--tatatt---ttgttttaataa-----tggccatgctaacagtgtataaactagtatct-cattgtggCATATG--------TTTTTTA------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50509715 74 +  54856640 att--tatatt---tagttttaataa-----tggccatgctaatagtgtataaaccagtatat-cattgtggCATATG--------TTTTTTA------
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       652640 74 -   2910086 att--tatatt---ttgttttaataa-----ctgccatgctaatagtgtataaactagtatct-cattgtggCATATG--------TTTTTTA------
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40679207 72 +  42888418 att--tatatt---ttgttttaataa-----tggccatgctaatagtgtataaactagtatct-cattgtggC--ACG--------TTTTTTA------
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             668995 75 -  36342412 cctgatacata---tatttttaataa-----tggccatcctaatgg-gtatacattggtatct-cattgtagGATACA--------TTGTTTT------
i otoGar3.GL873530          C 0 I 178
s canFam3.chr3               54442419 82 +  91889043 tac--tactttctactgttttaacaa-----tgaccatcttaatcg-gtgtgaacgggtatct-cactgtgg-gtatattggtttgtttttt-------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1847214 73 +   3943991 att--tTCATT-------TATGATAAAAATTTAGATATCAAGCCAG-ATGTAAAAAGGGATATACATTGT----------------TTTCTTTTGTTTT
i dasNov3.JH570731          I 17148 C 0
e mm10.chr7                  81382146 10520 + 145441459 I

a score=76269.000000
s hg38.chr15_KI270850v1_alt    370780 7 +    430880 -AAAAATT
s panTro5.chr15              63523864 7 +  83230942 -TAAAATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80480941 7 +  99763055 -TAAAATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        81122 7 -   1709092 -AAAAATT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17240652 7 - 121039945 -TAAAATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60921220 7 + 169600520 -aaaaatt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108447962 7 - 171882078 -AAAAATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        61338 7 -   2311642 -aaaaatt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        56891 7 -   1987038 -aaaaatt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21137515 7 -  24206276 -TAAAATT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        67859 7 -   1397330 -aaaaatt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        75537 7 -   1784207 -aaaaatt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22279030 7 + 158406734 -AAAAATT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50509789 7 +  54856640 -AAAAATT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       652714 7 -   2910086 -AAAAATT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40679279 7 +  42888418 -AAAAATT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             669248 7 -  36342412 -AAAAAAT
i otoGar3.GL873530          I 178 C 0
s canFam3.chr3               54442501 7 +  91889043 -aaagatt
i canFam3.chr3              C 0 I 183
s dasNov3.JH570731            1847287 7 +   3943991 AAATAAT-
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I

a score=651670.000000
s hg38.chr15_KI270850v1_alt    370787 66 +    430880 AGGTTGTACC----CAAA----TGTTTGAAGATTGCT-GTTGCCTAATTCATGAATCCC-----CAATGTTTT-TAAAAAT
s panTro5.chr15              63523871 66 +  83230942 AGGTTGTACC----CAAA----TGTTTGAAGATTGCT-GTTGCCTAATTCATGAATCCC-----CAATGTTTT-TAAAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80480948 66 +  99763055 AGGTTGTACC----CAAA----TGTTTGAAGATTGCT-GTTGCCTAATTCATGAATCCC-----CAATGTTTT-TAAAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        81129 66 -   1709092 AGGTTGTACC----CAAA----TGTTTGAAGATTGCT-GTTGCCTAATTCATGAATCCC-----CAATGTTTT-TAAAAAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17240659 66 - 121039945 AGGTTGTACA----CAAA----CGTTTGAAGATTGCT-GTTGCCTAATTCGTGAATCCC-----CAATGTTTT-TAAACAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60921227 62 + 169600520 agtCTGTACA----AAAA--------TGAAGATTGCT-GTTGTCTAATTCATGAATCCC-----GAATGTTTT-TAAAAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108447969 62 - 171882078 AGTCTGTACA----AAAA--------TGAAGATTGCT-GTTGCCTAATTCATGAATCCC-----GAATGTTTT-TAAAAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        61345 62 -   2311642 agtCTGTACA----AAAA--------TGAAGATTGCT-GTTGCCTAATTCATGAATCCC-----GAATGTTTT-TAAAAAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        56898 62 -   1987038 agGCTGTACA----AAAA--------TGAAGATTGCT-GTTGCCTAATTCATGAATCCC-----GAATGTTTT-TAAAAAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21137522 62 -  24206276 AGGCTGTACA----AAAA--------CGAAGATTGCT-GTTGCCTAATTCATGAATCCC-----GAATGTTTT-TAAAAAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        67866 62 -   1397330 agGCTGTACA----AAAA--------TGAAGATTGCT-GTTGCCTAATTCATGAATCCC-----GAATGTTTT-TAAAAAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        75544 66 -   1784207 agGCTGTACA----AAAA----TGTTTGAAGATTGCT-GTTGCCTAATTCACAAATCCC-----CAATGTTTT-TAAAAAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22279037 66 + 158406734 AGGCTGTACA----CAAA----TGTTGGAAGATTCCT-GTTGCCTAATTCATGAATCCC-----CAATGTTTT-AAAAAAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50509796 67 +  54856640 AGGTTGTACA----CAAA----TTTTGGAAGATTCCT-GTTGCCTAATTCATGAATCCC-----CAATGTTTTAAAAAAAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       652721 66 -   2910086 AGGTTGTACA----CAAA----TGTTGGAAGATTCCT-GTTGCCTAATTCATGAATCCC-----CAAGGTTTT-AAAAAAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40679286 66 +  42888418 AGGTTGTACA----CAAA----TGTTGGAAGATTCCT-GTTGTCTAATTCATGAATCCC-----CAACGTTTC-AAAAAAT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             669255 56 -  36342412 AGGTTGTACA----GAAA----CATTTGAAGGTTGTTGGCTCCCTAGTT----------------AGCGTTTT-TTAAAAT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54442691 75 +  91889043 AGGATGTATA----CAAACCAACGTTTTAAGATTGCA-GCTACCTTGTTCATGGTTCTCCCAGACCATGTTTT-TAAAAAT
i canFam3.chr3              I 183 C 0
s dasNov3.JH570731            1847294 61 +   3943991 AGGAGGTACACAACCAAA----TGTTTGATGATTGCT-GTTGCCTACTCCATGAACTCC-----CAAGATT----------
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I

a score=1114572.000000
s hg38.chr15_KI270850v1_alt    370853 120 +    430880 CTCCCCGACACCAGG--TTTTTGTTGAATTGCT--------------T-TTGTTGAATTGCCATCCAAGTGGT-CCTAAAGAC-AATGGCATCTTCTTGCagcattctacctc---actggttacagtgatggtcccatagg
s panTro5.chr15              63523937 106 +  83230942 CTCCCCGACACCAGG--TTTTTGTTGAATTGC-----------------------------CATCCAAGTGGT-CCTAAAGAC-AATGGCATCTTCTTGCagcattctacctc---cctggttacagtgatggtcccatagg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80481014 106 +  99763055 CTCCCCGACACCAGG--TTTTTGTTGAATTGC-----------------------------CATCCAAGTGGT-CCTAAAGAC-AATGGCATCTTCTTGCagcattctacctc---actggttacagtgatggtcccatagg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        81195 120 -   1709092 CTCCCCGACACCAGG--TTTTTGTTGAATTGCT--------------T-TTGTTGAATTGCCATCCAAGTGGT-CCTAAAGAC-AATGGCATCTTCTTGCagcattctacctc---actggttacagtgatggtcccatagg
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60921289 120 + 169600520 CTCCCCCACACCAGG--TTTTTGTTGAATTGCT--------------T-TTGTTGAATTGCCATCCAAGTGGT-CCTAAAGGC-AATGGCATCTTCTAGCAGgattccacctc---actagttacagtgatggtcccatagg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108448031 120 - 171882078 CTCCCCCACACCAGG--TTTTTGTTGAATTGCT--------------T-TTGTTGAATTGCCATCCAAGTGGT-CCTAAAGGC-AATGGCATCTTCTCGCAGGATTCCACCTC---ACTAGTTACAGTGATggtcccatagg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        61407 120 -   2311642 CTCCCCCACACCAGG--TTTTTGTTGAATTGCT--------------T-TTGTTGAATTGCCATCCAAGTGGT-CCTAAAGGC-AATGGCATCTTCTAGCAGgattccacctc---actagttacagtgatggtcccatagg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        56960 120 -   1987038 CTCCCCCACACCAGG--TTTTTGTTGAATTGCT--------------T-TTGTTGAACTGCCATCCAAGTGGT-CGTAAAGGC-AATGGCATCTTCTAGCAGGATTCCACCTC---ACTAGTTACAGTGATggtcccatagg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21137584 120 -  24206276 CTCCCCCACACCAGG--TTTTTGTTGAATTGCT--------------T-TTGTTGAATTGCCATCCAAGTGGT-CCTAAAGGC-AATGGCATCTTCTAGCAGGATTCCACCTC---ACTAGTTACAGTGATggtcccatagg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        67928 120 -   1397330 CTCCCCCACACCAGG--TTTTTGTTGAATTGCT--------------T-TTGTTGAATTGCCATCCAAGTGGT-CCTAAAGGC-AATGGCACCTTCTAGTAGGATTCCACCTC---ACTAGTTACAGTGATggtcccatagg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        75610 134 -   1784207 CTCTCCCACACCAGG--TTTTTGTTGAATTGCTTTTGTTGAATTGCCT-TTGTTGAATTGCCATCCAAGTGGT-CCTAAAGGC-AATGGCATCTTCTAGCAGGATTCCACCTC---ACTGGTTACAGTGATggtcccatagg
i colAng1.NW_012117110v1    C 0 I 1
s calJac3.chr6               22279103 122 + 158406734 CTCCCCAACACCAGGTTTTTTTTTTTAATTGCT--------------T-TTGTTGAATTGCCATCCAAGTGGT-CCTAAAGGC-AATGGCATCTTCTTGCAGGATTCTACCTC---CCTGGTTACAGTAATGGTCCCATAGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50509863 120 +  54856640 CTCCCCAATACCAGG--TTTTTTTTAAATTGCT--------------T-TTGTTGAATTGCCATCCAAGTGGT-CCTAAAGGC-AATGGCATCTTCTTGCAGGATTCCACCTC---CCTGGTTACAGTAATGGTCCCACAAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       652787 121 -   2910086 CTCCCCAACACCAGA-TTTGTTTTTGAATTGCT--------------T-TTGTTGAATTGCCATCCAAGTGGT-CCTAAAGGT-AGTGGCATCTTCTTGCAGGATTCCACCTC---TCTGGTTACAGTAATGGTCCCATAGG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40679352 121 +  42888418 CTCCCCAACACCAGG-TTTTTTTTTGAATTGCT--------------T-TTGTTGAATTGCCATCCAAGTGGT-GCTAAAGGC-AATGGCATCTTCTTGCAGGATTCTACCTC---CCTGGTTACAGTAATggtcccatagg
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             669311 109 -  36342412 CTCCCATATACCAGG--TTT---TGGAACCATT--------------T-TTCTGTTTATGCCATCTAAACGGT-GTTAGAGGCAAATGCCATCTTCTTGCAGGATTCTACCCCGCACCCAGTCACAGTGA------------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54442766 120 +  91889043 CTCCCACACATCAGG--TTTTTGTTTGATCTTT--------------TCTTCTTCCTATGGCATATAAATGGTCCCTAAAGGCAAATGCCACCCTCCTGCAGGATTCTGCTTC---ACTGATT--AGTGATGGt-ccacagg
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1847355 102 +   3943991 ---CCCAACAAAAGA--CTTTGGTTGAACTGAT--------------T-TTCTTCTTTTGTCATCCTGGCAAA-GAGAAAAGC-AAAGGCCATTTTTAACAGGATTCCGACTC------------AATGGTGGTCC------
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I
e nomLeu3.chr6               17240725   0 - 121039945 C

a score=2834727.000000
s hg38.chr15_KI270850v1_alt    370973 237 +    430880 taagtatctgactcaagctgggcaagaattacccattcccatgactacagagaccagtccaggtatgggtatgacttaagccaagctagctgggtat--ctttccttgaga-tttttctaactgtatataatggaaaaagaactat--ttccTGATTGTCCATGATGCCA-AAGGATGTGAGCATATACCCT---TTCTCAT-------A-ACTGGCAACTCTGCAAAAGGAG-ATAATGAAACTCACACTGGGA
s panTro5.chr15              63524043 237 +  83230942 taagtatctgactcaagctgggcaagaattacccatccccatgactacagagaccagtccaggtatgggtatgacttaagccaagctagctgggtat--ctttccttgaga-tttttCTAACTGTATATAACGGAAAAAGAACTAT--TTCCTGATTGTCCATGATGCCA-AAGGATGTGAGCATATACCCT---TTCTCAT-------A-ACTGGCAACTCTGCAAAAGGAG-ATAATGAAACTCACACTGGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80481120 237 +  99763055 taagtatctgactcaagctgggcaagaattacccatccccatgactacagagaccagtccaggtatgggtatgacttaagccaagctagctgggtat--ctttccttgaga-tttttCTAACTGTATATAACGGAAAAAGAACTAT--TTCCTGATTGTCCATGATGCCA-AAGGATGTGAGCATATACCCT---TTCTCAT-------A-ACTGGCAACTCTGCAAAAGGAG-ATAATGAAACTCACACTGGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        81315 237 -   1709092 taagtatctgactcaagctgggcaagaattacccatccccatgactacagagaccagtccaggtatgggcatgacttaagccaaactagctgggtat--ctttccttgaga-tttttctaactgtatataatggaaaaagaactat--ttccTGATTGTCCATGATGCCA-AAGGATGTGAGCATATACCCT---TTCTCCT-------A-ACTGGCAAATCTGCAAAAGGAG-ATAATGAAACTCACACTGGGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17240725 237 - 121039945 TAAGTATCtgactcaagttgggcaagaattacccatccccatgactacagagaccagtccaggtatgggcatgacttcagccaagttaggtgggtat--ctttccttgaga-tttttCTAACTGTATATAATGGAAGAAGAATTAT--TTCCTGATTGTCCATGATGCCA-AAGGATGTGAGCATATACCCT---TTCTCAT-------A-ACTGGCAACTCTGCAAAAGGAG-ATAATGAAACTCACACTGGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60921409 237 + 169600520 taagtatctgactcaagctgggcaagaattacccatccccatggccacagagaccagtccaggtatgggcatgacttaagccaagctagctgggtat--ctttccttgaga-tttttCTAACTGTATATAGTGGAAGAAGAACTAT--TTCCTGATTGTCCATGATGCCA-AAGGATGTGAACATACACCCT---TTCTCAT-------A-ACTGGCAACTCTGCAAAAGGAG-ATAATGAAACTCACACTGGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108448151 236 - 171882078 taagtatctgactcaagctgggcaagaattacccatccccatggccacagagaccagtccaggtatgggcatgacttaagccaagctagctgggtat--ctttccttgaga-tttttCTAACTGTATATAGTGGAAGAA-AACTAT--TTCCTGATTGTCCATGATGCCA-AAGGATGTGAACATACACCCT---TTCTCAT-------A-ACTGGCAACTCTGCAAAAGGAG-ATAATGAATCTCACACTGGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        61527 237 -   2311642 taagtatctgactcaagctgggcaagaattacccatccccatggccacagagaccagtccaggtataggcatgacttaagccaagctagctgggtat--ctttccttgaga-tttttCTAACTGTATATAGTGGAAGAAGAACTAT--TTCCTGATTGTCCATGATGCCA-AAGGATGTGAACATACACCCT---TTCTCAT-------A-ACTGGCAACTCTGCAAAAGGAG-ATAATGAAACTCACACTGGGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        57080 237 -   1987038 taagtatctgactcaagctgggcaagaattacccatccccatggccacagagaccagtccaggtatgggcatgacttaagccaagctaGCTGGGTAT--CTTTCCTTGAGA-TTTTTCTAACTGTATATAGTGGAAGAAGAACTAT--TTCCTGATTGTCCATGATGCCA-AAGGATGTGAACATACACCCT---TTCTCAT-------A-ACTGGCAACTCTGCAAAAGGAG-ATAATGAAACTCACACTGGGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21137704 237 -  24206276 taggtatctgactcaagctgggcaagaattacccatccccatgaccacagagaccagtccaggtatgggtatgacttaagccaagctagctgggtat--ctttccttgaga-tttttCTAACTGTATATAGTGGAAGAAGAACTAT--TTCCTGATTGTCCATGATGCCA-AAGGATGTGAACATACACCCT---TTCTCAT-------A-ACTGGCAACTCTGCAAAAGGAG-ATAATGAAACTCACACTGGGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        68048 237 -   1397330 taagtatctgactcaagctgggcaagaattacccatccccatggccacagagaccagtccaggtatgggcatgacttaagccaagctaGCTGGGTAT--CTTTCCTTGAGA-TTTTTCTAACTGTATATAGTGGAAGAAGAACTAT--TTCCTGATTGTCCATGATGCCA-AAGGATGTGAACATACACCCT---TTCTCAT-------A-ACTGGCAACTCTGCAAAAGGAG-ATAATGAAACTCACACTGGGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        75745 237 -   1784207 taagtatctgactcaagctgggcaagaattacccatccccatgaccacagagaccagtccaggtatgggcatgacttaagccaagctagctgggtat--ctttccttgaga-tttttCTAACTGCATATAGTGGAAGAAGAACTAT--TTCCTGATTGTCCATGAAGCCA-AAGGAAGTGAACATACACCCT---TTCTCAT-------A-ACTGGCAACTCTGCAAAAGGAG-ATAATGAAACTCACACTGGGA
i colAng1.NW_012117110v1    I 1 C 0
s calJac3.chr6               22279225 234 + 158406734 TAAGCATCTGACTCAAGCTAAGCAAGAATTACCCAACCCCATGACTACAGAGACCAGTCCAGGTATAGGCATGACTTAAGCCAACCTAGCTGGGTAT--ATTTCCTTGAGA-TTTTTCTAACTGTGGGTAGTGGAAG---AACTAT--TTCCAGATTGTCCATGACGCCA-AAGGATGTGAGCATATACTCT---TTCTCAT-------A-ACAGGCAACTCTGCAAAAGGAG-ATAATGAAACTCATGGTGGGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50509983 236 +  54856640 TAAGCATTTGACTCAAGCTAAGCAAGAATTACCCAACCCCATGACTACAGAGACCAGTCCACATATGGGCATGACTTAAGCCAAACTAGCTGGGTAT--CTTTCCTTGAGA-TTTTTCTAACTGTAGATAGTGGAAG---AACCATTCTTCAGGATTGTCCATGATGCCA-AAGGATGTAAGCATATACTCC---TTCTCAG-------A-ACAGGCAACTCTGTAAAAGGAG-ATAATGAAACTCACACTGGAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       652908 234 -   2910086 TAAGCGCCTGACTCAAGCTAAGCAAGAATTACCCAATCCTATGACTACAGAGACCAGTCCACATACGGGCATGACTTAAGCCAACCTAACTGGGTAT--CTTTCCTTGAGA-TTTTTCTAACTGTAGATAGTGGAAG---AACTAT--TTCAGGATTGTCCATGATGCCA-AAGGATGTAAGCATATACTCC---TTCTCAT-------A-ACAGGCAACTCTGTAAAAGGAG-ATAATGAAACTCACACTGGGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40679473 235 +  42888418 taagcatctgactcaagctaagcaagaattacccaaccccatgattacagagaccagtccaggtatgggcatgacttaagccaacctagttgggtat--ctttcctcgagattttttctaactgtAGACAGTGGAAG---AACTAT--TTCTGGATTGTCCATGACGCCA-AAGGATGTGAGCATATACTCT---TTCTCAT-------A-ACAGGCAACTCTCTAACAGGAG-ATAATGAAACTCACACTGGGA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             669420 228 -  36342412 ---GCATCTGACTCAACCTGGGCAAGAGTAACTCATTCCCATGATT--AGAGACCAGTTCAGGCAAGGGTGTGATGTAAGCCGA-CTAGGTAGGAGT--CCTCCCCCAAGA-TCCCTTTGACTG----TAGTAAAGGAAGAACCAT--TTCCTGACTGTTCACGATGCCA-GGGCTTATAAGCATAGCTCAC---TTCTCAG-------ATGGTGCCAAGTCTGCAGGAGGTG-ATGATGAAACCCACACTGGGA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54442886 244 +  91889043 tgaacatgtaaccccacctgggcttgaataacccattcctgggactacagagacttgtccaagtatgggcacaactcacaccaagccacctgggggttgccctttttgcAA-TTTTTCTAATTAGACATAGTGGAAGAAGAACCAT--TTCCTGGC--TTCATGATGCTA-GAGAAGGCAAGCATAACCCCT---TCCCCACCCAGATAA-TGGGGCAATTGTGCAAAAGGAG-AAAATGAAACCCACACTTGGG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1847457 193 +   3943991 -----------------------------------------------CAGTAACCAGTCCAGATATGGGCATGACTCAACCCACGCTAGCTGGGAAT--CCTTCCTT-ACA-TTATTCCAACTGGACAGAGCAGA-GAAGAACCAT--TTCCTGACTGTTCACAACATAAGGAGGATATGAGCACATCCCCTACCTTCGAGC-------A-AGAGGCAAGTCTGCAAAAGGAGAAAAATGAAAACCACACTGGGA
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81382146 10520 + 145441459 I

a score=2945952.000000
s hg38.chr15_KI270850v1_alt    371210 237 +    430880 AATGAGCAGAGGAAAGACAGAAATAGA------CAAAATTGGAGGCCACAGATTCAGTATC----CCT-----AGCTTTCCAGTGATTCCTTCCTATTCTATGAGCTTTGTATCAACAGCGTTCCAACATACCCCA--CATTTTACTAAAGTAAGTTCTAATTTGGTGTTTGATTT-TTTACAAACGGG-AGTGTTCTGCGTAATTCAGGCCCTTT-A-GCAAGGATAGACCAAACAAGTAACTACTGCATGCAGGAT
s panTro5.chr15              63524280 237 +  83230942 AATGAGCAGAGGAAAGACAGAAATAGA------CAAAATTGGAGGCCACAGATTCAGTATC----CCT-----AGCTTTCCAGTGATTCCTTCCTATTCTATGAGCTTTGTATCAACAGCGTTCCAACATACCCCA--CATTTTACTAAAGTAAGTTCTAATTTGGTGTTTGATTT-TTCACAAATGAG-AGTGTTCTGCGTAATTCAGGCCCTTT-A-GCAAGGATAGACCAAACAAGTAACTACTGCATGCAGGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80481357 237 +  99763055 AATGAGCAGAGGAAAGACAGAAATAGA------CAAAATTGGAGGCCACAGATTCAGTATC----CCT-----AGCTTTCCAGTGATTCCTTCCTATTCTATGAGCTTTGTATCAACAGCGTTCCAACATACCCCA--CATTTTACTAAAGTAAGTTCTAATTTGGTGTTTGATTT-TTCACAAATGAG-AGTGTTCTGCGTAATTCAGGCCCTTT-A-GCAAGGATAGACCAAACAAGTAACTACTGCATGCAGGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        81552 237 -   1709092 AATGAGAAGAGGAAAGACAGAAATAGG------CAAAATTGGAGGCCACAGATTCAGTATC----CCT-----AGCTTTCCAGTGATTCCTTCCTATTCTATGAGCTTTGTATCAACAGCGTTCCAACATACCCCA--CATTTTACTAAAGTAAGTTCTAATTTGGTGTTTGATTT-TTTACAAATGAG-AGTGTTCTGCGTAATTCAGGCCCTTT-A-GCAAGGATAGACCAAACAAGTAACTACTGCATGCAAGAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17240962 233 - 121039945 AATGAGCAGAGGAAAGACAGAAATAGG------CAAAATTGGAGGCCACAGATTCAGTATC----CCT-----AGCTGTCCAGTGATTCCTTCCTATTCTATGAGCTTTGTATCAACAGCGTTCCAACATACCCCA--CATTTTACTA----AAGTTCTAATTGGGTGTTTGATTT-TTTACAAATGAG-AGTGTTCTGCGTAATTCAGGCCCTTT-A-GCAAGGATAGACCAAACAAGTAACTACTGCATGCAGGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60921646 236 + 169600520 AATGAGCAGAGGAAAGACAGAAATAGG------CAAAATTGGAGGCCACAGATTCAGTATC----CCT-----AGCTTTCCAGTAATTCTTTCCTACTCTGTGAGCTTTGTATCAACAGCCTTCCAACATACCCCA--CATTTTACTAAAGT-AGTTCTAATTGCGTGTTTGACTG-CTTACAAATGAA-AGTGTTCTGTGTAATTCAGGCCCTTT-A-GCAAGGATAGAGCAAACAAGTAACTACTGCATGCAGGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108448387 236 - 171882078 AATGAGCAGAGGAAAGACAGAAATAGG------CAAAATTGGAGGCCACAGATTCAGTATC----CCT-----AGCTTTCCAGTAATTCTTTCCTACTCTGTGAGCTTTGTATCAACAGCCTTCCAACATACCCCA--CATTTTACTAAAGT-AGTTCTAATTGCGTGTTTGACTG-CTTACAAATGAG-AGTGTTCTGTGTAATTCAGGCCCTTT-A-GCAAGGATAGAGCAAACAAGTAACTACTGCATGCAGGAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        61764 236 -   2311642 AATGAGCAGAGGAAAGACAGAAATAGG------CAAAATTGGAGGCCACAGATTCAGTATC----CCT-----AGCTTTCCAGTAATTCTTTCCTACTCTGTGAGCTTTGTATCAACAGCCTTCCAACATACCCCA--CATTTTACTAAAGT-AGTTCTAATTGCGTGTTTGACTG-CTTACAAATGAG-AGTGTTCTGTGTAATTCAGGCCCTTT-A-GCAAGGATAGAGCAAATAAGTAACTACTGCATGCAGGAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        57317 236 -   1987038 AATGAGCAGAGGAAAGACAGAAATAGG------CAAAATTGGAGGCCACAGATTCAGTATC----CCT-----AGCTTTCCAGTAATTCTTTCCTACTCTGTGAGCTTTGTATCAACAGCCTTCCAACATACCCCA--CATTTTACTAAAGT-AGTTCTAATTGCGTGTTTGACTG-CTTACAAATGAG-AGTGTTCTGTGTAATTCAGGCCCTTT-A-GCAAGGATAGAGCAAACAAGTAACTACTGCATGAAGGAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21137941 236 -  24206276 AATGAGCAGAGGAAAGACAGAAATAGG------CAAAATTGGAGGCCACAGATTCAGTATC----CCT-----AGCTTTCCAGTAATTCTTTCCTACTCTGTGAGCTTTGTATCAACAGCCTTCCAACATACCCCA--CATTTTACTAAAGT-AGTTCTAATTGCGTGTTTGACTG-CTTACAAATGAG-AGTGTTCTGTGTAATTCAGGCCCTTT-A-GCAAGGATACAGCAAACAAGTAACTACTGCATGCAGGAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        68285 236 -   1397330 AATGAGCAGAGGAAAGACAGAAATAGG------CAAAATTGGAGGCCACAGATTCAGTATC----CCT-----AGCTTTCCAGTAATTCTTTCCTACTCTGTGAGCTTTGTATCAACAGCCTTCCAACATACCCCA--CATTTTACTAAAGT-AGTTCTAATTGCGTGTTTGACTG-CTTACAAATGAG-AGTGTTCTGTGTAATTCAGGCCCTTT-A-GCAAGGATAGAGCAAACAAGTAACTACTGCATGAAGGAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        75982 236 -   1784207 AATGAGCAGAGGAAAGACAGAAATAGA------CAAAATTGGAGGCCACAGATTCAGTATC----CCT-----AGCTTTCCAGTAATTCTTTCCTATTCTGTGAGCTTTGTATCAACAGCCTTCCAATATACCCCA--CATTTTACTAAAGT-AGTTCTAATTGGGTGTTTGATTG-CTTACAAATGAG-AGTGTTCTGTGTAATTCAGGCCCTTT-A-GCAAGGATAGACCAAACAAGTAACTACTGCATGCAGGAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22279459 236 + 158406734 AATGAGCAGAGGAAAGACAGAAATAGA------CAAAACTGGAGGCCACAAATTCAGTATC----CCC-----AGCTTTCCAGTGATTCCTTCCTATTCCGTGAGCTTTGTATCAACAG-CTTCTAACATATCCCA--CATTTTACTAAAGTAAGTTCTAACTGGGTGTTTAATTG-TTTACAAATCAG-AGTGTTCTGTGTAATTCAGGCCCTTT-A-GCAAGGATAGGCTAAACGAGCAACTACTGCATGCAGGAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50510219 237 +  54856640 AACGAGCAGAGGAAAGACAGAAATAGA------CAAAACTGGAGGCCACAAATTCAGTATC----CCC-----AGCTTTCCAGTGATTCCTTCCTATTCAGTGAGCTTTATATCAACAGCCTTCCAACATATACCA--CATTTTACTAAAGTAAGTTCTAACTGGGTGTTTGATTG-TTTACAAACCAG-AGTGTTCTGTGTAATTCAGGTCCTTT-A-GCAAGGATACACCAAACAAGTAACTACAGCATGCAGGAT
i saiBol1.JH378108          C 0 I 378
s cebCap1.NW_016107610v1       653142 233 -   2910086 AATGAGCAGAGGAAAGTCAGAAATAGA------TAAAACTGGAGGCCACAAATTCAGTATC----CCC-----AGCTTTCCAGTGA----TTCCTATTCTGTGAGCTTTGTATCAACAGCCTTCCAACATATCCCA--CATTTTACTAAAGTAAGTTCTAACTGGGTGTTTGATTG-TTTACAAATCAG-AGTGTTCTGTGTAATTCAGGCCCTTT-A-GCAAGGATATACCAAACAAGTAACTACTGCATACAGGAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40679708 237 +  42888418 AATGAGCAGAGGAAAGATAGAAATAGA------TAAAACTGGAGGCCACAAATTCAGTATC----TCC-----AGCTTTCCAGTGATTCCTTCCTATTCTGTGAGCTTTCTATCAACAGCCTTCCAACATATCCCA--CATTTTACTAAAGTAAGTTCTGATTGGGTGTTTGATTG-TTTACAAATCAG-AGTGTTCTGTGCAATTCAGGCCCTTT-A-ACAAGGATAGACCAAACAAGTAACTACTGCATGCTGGAT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             669648 219 -  36342412 AACAAGCAG-------------TTTTA------CACAACTGCAGGCCTTGGACTCAGTACC----CCT-----AGTGTTTCAGTGATTTCTTCATTTTCCATGAGCTATGTGTCAG-AGTCTTACAACACATCTCA--CATTTCGCTTAAGTAAGTTCTAATTAGGTGCTTGATGG-TGTGCAAATAAGAAGTGTTCTGTATAGTTCAAGCCGTTT-A-GCAA-GCTTGACTAAAC----AATTACTGCATGCAGGAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81392666 227 + 145441459 AAGAAGCAAAGGAAAATC-GATCTTGA------TGAAACTGGA-GTCTTAGCTTACACATT----CCT-----GGTTTTTCAATCATTCCTTTCTATTTTGTGAACTATGTACTGGGAAATTTCCAACATAG--TA--TTTTTTTTGAAAGTTAGTTCTCATTA---ATTTAGTCA-TTTTTAAATAAG-AAAA---TGTGTGATTCAGACCCTTT-C-ACAAGAATTGATCAACCAAGCCAATAGTACACACAAATC
i mm10.chr7                 I 10520 C 0
s canFam3.chr3               54443130 240 +  91889043 ------GAGAGGCCACAAAGAGACAGGATCT--TAACATTGAAGGCTCTGGATTCAATGTCCTTACTT-----AGTTTTCCGGCCATTTCTTCCAATTCTGTGAGGTATATACCAAGAGCCTTCCAACACATCTCG--TAATATGCTAAGGTTAGTTCTAATCAGGTGTTTGGTTA-TTTGCAAGTAAG-AGCATTCTGCATAATTCAGGTCTGTTAA-GCAAGGATTGATCAAGAAAGTAATTACTACAGGCAGGGT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1847650 251 +   3943991 GGGAAGCACAGGAGAAATGGAGAAGGAGTCTTGACAAATTGCAAGTCATGGATTTGGCATC----CCTACTTAAGTTTGTCAGCAGTTTCTTCCTATTCTGTGAGCTATATACCAAGAGACTTCCAATACATCGCATTTTTTTTGCTAAAGTTATTTCTAATTAAGTGCTTGATCATTTTACAAACAAG-AGTGTTCTGTATATTTCAGGCCCTTT-AGGCAAGGACTAACCAAACAAGTAATTACTATATGCAGGG-
i dasNov3.JH570731          C 0 C 0

a score=1084703.000000
s hg38.chr15_KI270850v1_alt    371447  96 +    430880 AAAAATCTCTGGGACAAAAGCCCTTAA-TATCCTGGCACCAGCTAAGAA-AGTCAGCCACAAAAGAAAGCAGGAAAGAAGCTTAA-----AGACCACCTTGTC-
s panTro5.chr15              63524517  96 +  83230942 AAAAATCTCTGGGACAAAAGCCCTTAA-TATCCTGGCACCAGCTAAGAA-AGTCAGCCACAAAAGAAAGCAGGAAAGAAGCTTAA-----AGACCACCTTGTC-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80481594  96 +  99763055 AAAAATCTCTGGGACAAAAGCCCTTAA-TATCCTGGCACCAGCTAAGAA-AGTCAGCCACAAAAGCAAGCAGGAAAGAAGCTTAA-----AGACCACCTTGTC-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        81789  96 -   1709092 AAAAATCTCTGGGACAAAAGCCCTTAA-TATCCTGGCACCAGCTAAGAA-AGTCAGCCACAAAAGAAAGCAGGAAAGAAGCTTAA-----AGACCACCTTGTC-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17241195  96 - 121039945 AAAAATCTCTGGGACAAAAGCCCTTAA-TATCTTGGCACCAACTGAGAA-AGTCAGCCACAAAAGAAAGCAGGAAAGAAGCGTAA-----AGACCACCTTGTC-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60921882 101 + 169600520 AAAAATCTCTGGGACAAAAGCCCTTAA-TGTCCTGGCACCAGCTGAGAA-AGTCAGCCACAAAAGAAAGCAGGAAAGAAGCTTGAAGACCAGACCACCTTGTC-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108448623 101 - 171882078 AAAAATCTCTGGGACAAAAGCCCTTTA-TGTCCTGGCACCAGCTGAGAA-AGTCAGCCACAAAAGAAAGCAGGAAAGAAGCTTGAAGACCAGACCACCTTGTC-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        62000 101 -   2311642 AAAAATCTCTGGGACAAAAGCCCTTAA-TGTCCTGGCACCAGCTGAGAA-AGTCAGCCACAAAAGAAAGCAGGAACGAAGCTTGAAGACCAGACCACCTTGTC-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        57553 101 -   1987038 AAAAATCTCTGGGACAAAAGCCCTTAA-TGTCCTGGCACCAGCTGAGAA-AGTCAGCCACAAAAGAAAGCAGGAAAGAAGCTTGAAGACCAGACCACCTTGTC-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21138177 101 -  24206276 AAAAATCTCTGGGACAAAAGCCCTTAA-TATCCTGGCACCAGCTGAGAA-AGTCAGCCACAAAAGAAAGCAGGAAAGAAGCTTGAAGACCAGACCACCTTGTC-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        68521 101 -   1397330 AAAAATCTCTGGGACAAAAGCCCTTAA-TGTCCTGGCACCAGCTGAGAA-AGTCAGCCACAAAAGAAAGCAGGAAAGAAGCTTGAAGACCAGACCACCTTGTC-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        76218 101 -   1784207 AAAAATCTCTGGGACAAAAGCCCTTAA-TGTCCTGGCACCAGCTGAGAA-AGTCAGCCATAAAAGAAAGCAGGAAAAAAGCTTGAAGACCAGACCACCTTGTC-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22279695  90 + 158406734 AAAAATCTCTGGTACAAAAGACCTTAA-TGTCCTGGCACCAGATGAAAA-----AGCCACAAAAGACAGCAGGAAAGCAGTTT-------ATACCATCTTGTG-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50510834  94 +  54856640 AAAAATCTCTGGTACAAAAGCCCTTAA-TGTCCTGGCACCAGATGAGAA-AGTCAGCCACAAAAGCAAGCAGGAAAGCAGTTT-------ATACCACCTTGTG-
i saiBol1.JH378108          I 378 C 0
s cebCap1.NW_016107610v1       653375  90 -   2910086 AAAAATCTCTGGTACAAAAGCTCTTAA-TGTCCTGGCACCAGATGAGAA-----AGCCACAAAAGAAAGCAGGAAAGCAGTTT-------ATACCACCTTGTG-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40679945  94 +  42888418 AAAAATCTCTGGTACAAAAGCCCTTAA-TGTCCTGGCACCAGATGAGAA-AGTCAGCCACAAAAGAAAGCAGGAAAGCAGTTT-------ATACCACCTTGTG-
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             669867  81 -  36342412 AAGAATTGCT-GCACAAAAATCTTTAAGTGGTCTGGTACCAGATGAAAA-TATCAGCCACAAAGGAAAGCAGAAAAGGAGCTT---------------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81392893  80 + 145441459 AAAATTCTCTGGGATCAAAGCCCTCAT-AATTCTAGTACCA----AGAA-AGAGAGCCGCAGAA--AAGAAGTACAAAAACTGAA-----GGA-----------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54443370  94 +  91889043 TGAGAGCTCTGGGACAAAAGCCCCTAA-CACCCTGTCACCAAGTAAGA---GTCGGCCACAAAGAaaagcaggaagggatctaga-----aaaacagttggtt-
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1847901  91 +   3943991 ------CTCTGGAACAAAAGCCTTTAAAAGTCCTGGCACCCAATATGATCAGTCA--CACAAAAGAAAACAGGAAAGGAAATAAA-----AGACCACCTGGATC
i dasNov3.JH570731          C 0 I 498

a score=837335.000000
s hg38.chr15_KI270850v1_alt    371543  88 +    430880 AAATTCCTCGCCA---------TCCCG-----------TCTTTTTTT----------------ACTAGAAAGCACACAAGGCTCAGAGATGGCCATAAGCGACAAAGCTACTAAAAGGCAGAAG----
s panTro5.chr15              63524613  89 +  83230942 AAATTCCTCGCCA---------TCCCG-----------TCTTTTTTTT---------------ACTAGAAAGCACACAAGGCTCAGAGATGGCCATAAGCGACAAAGCTACTAAAAGGCAGAAG----
i panTro5.chr15             C 0 I 4
s panPan2.chr15              80481690  89 +  99763055 AAATTCCTCGCCA---------TCCCG-----------TCTTTTTTTT---------------ACTAGAAAGCACACAAGGCTCAGAGATGGCCATAAGCGACAAAGCTACTAAAAGGCAGAAG----
i panPan2.chr15             C 0 I 4
s gorGor5.CYUI01015556v1        81885  88 -   1709092 AAATTCCTCGCCA---------CCCCG-----------TCTTTTTTT----------------ACTAGAAAGCACACAAGGCTCAGAGACGGCCATAAGCGACAAAGCTACTAAAAGGCAGAAG----
i gorGor5.CYUI01015556v1    C 0 I 4
s nomLeu3.chr6               17241291  90 - 121039945 AAATTCCTTGCCA-------CCTCCCA-----------TCTTTTTCT----------------ACTAGAAAGCACACAAGGCTCAGAGATGGCCATAAGCAACAAAGCTACTAAAAGGCAGAAG----
i nomLeu3.chr6              C 0 I 4
s rheMac8.chr7               60921983  92 + 169600520 AAATTCCTCGCCA-------CCACCCA-----------TCTTTTTTTTT--------------AGAAGAAAGCACACGAGGCTCAGAGATGGCCATAAGCCACAAAGCTACTAAAAGGCAGAGG----
i rheMac8.chr7              C 0 I 4
s macFas5.chr7              108448724  92 - 171882078 AAATTCCTCGCCA-------CCACCCA-----------TCTTTTTTTTT--------------AGAAGAAAGCACACGAGGCTCAGAGATGGCCATAAGCCACAAAGCTACTAAAAGGCAGAGG----
i macFas5.chr7              C 0 I 4
s macNem1.NW_012011945v1        62101  92 -   2311642 AAATTCCTCGCCA-------CCACCCA-----------TCTTTtttttt--------------agaagaaagcacacgaggctcagagatggccataagccacaaagctactaaaaggcagagg----
i macNem1.NW_012011945v1    C 0 I 4
s cerAty1.NW_012002657v1        57654  92 -   1987038 AAATTCCTCGCCA-------CCACCCA-----------TCTTTtttttt--------------agaagaaagcacacgaggctcagagatggccataagccgcaaagctactaaaaggcagagg----
i cerAty1.NW_012002657v1    C 0 I 4
s chlSab2.chr29              21138278  92 -  24206276 AAATTCCTCACCA-------CCACCCA-----------TCTTTTTTTTT--------------AGAAGAAAGCACACGAGGCTCAGAGATGGCCATAAGCCACAAAGTTACTAAAAGGCAGAGG----
i chlSab2.chr29             C 0 I 4
s manLeu1.NW_012106908v1        68622  92 -   1397330 AAATTCCTCGCCA-------CCACCCA-----------TCTTTtttttt--------------agaagaaagcacacgaggctcagagatggccattagccacaaagctactaaaaggcagagg----
i manLeu1.NW_012106908v1    C 0 I 4
s colAng1.NW_012117110v1        76319 106 -   1784207 AAATTCCTCGCCA-------CCACCCA-----------TCtttttttgtttgtttgttttttAAGAAGAAAGCACACAAGGCTCAGAGATGGCCATAAGCCACAAAGCTACTAAAAGGCAGAGG----
i colAng1.NW_012117110v1    C 0 I 4
s calJac3.chr6               22279785  95 + 158406734 AAATTCCTTGCCA-------CCCTCCA------------TTTTTTTTTTTTAA----------ACTAGAAAGCACACAAGGCTCAGAGATGGCCGTAAGCAACAAAGCTACTAAAAGGCAGAGG----
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50510928 104 +  54856640 AAATTCCTTGCCACACACCGCCCCCCAC----------TTTTTTTTTTTTTTA----------ACTAGAAAGCACACAAGGCTCAGAGATGGCCGTAAACAACAAAGCTACTAAAAGGCAGAAG----
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       653465 103 -   2910086 AAATTCCTTGCCAC------CCCCCCACCtttttttttttttttttttttttA----------ACTAGAAAG--CACAAGGCTCAAAGATGGCCGTAAGCAACAAAG---CTAAAAGGCAGAGG----
i cebCap1.NW_016107610v1    C 0 I 6
s aotNan1.NW_018505940v1     40680039  97 +  42888418 AAATTCCTTGCCAC------TCCtttt-----------ttttttttttttttC----------CCTAGAAAGCACACAAGCCTCAGAGATGGCCGTAAGCAATAAAGCTACTAAAAGGTAGAGG----
i aotNan1.NW_018505940v1    C 0 I 6
s otoGar3.GL873530             669948  69 -  36342412 --------------------TTACCCT-----------TTTT---------------------ACGAAAGAGCAAACAAGGCCCAGAAATGGCC-TAAGTGACAAAGGTATTGAAGTTCAGA------
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81392973  71 + 145441459 ------------A-------CCTCCTG-----------TTTGTTCTTC---------------ACTGGAGA----ACAAAGCTTAGAATAAACCAAAG---ACACTGCTACCAAAA-GCAGAGG----
i mm10.chr7                 C 0 I 4
s canFam3.chr3               54443464  71 +  91889043 aaa---------a-------------------------cctttttc-----------------tccagagagcaaacaaggcccagagagggcca-aagtgacaaagctactaagtggcagag-----
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1848490  91 +   3943991 AAACCCCTCCCCA-----------CTA-----------TTTTTCTTTTA--------------ACTAGAGAACAAACAAAGCCCAAAGAAGGTCA-AAGTAAGAAAGCTACTAAGTAACAGACATGTG
i dasNov3.JH570731          I 498 C 0

a score=69320.000000
s hg38.chr15_KI270850v1_alt    371631 12 +    430880 ATCCAAATCTCG
s panTro5.chr15              63524706 12 +  83230942 ATCCAAATCTCG
i panTro5.chr15             I 4 C 0
s panPan2.chr15              80481783 12 +  99763055 ATCCAAATCTCG
i panPan2.chr15             I 4 C 0
s gorGor5.CYUI01015556v1        81977 12 -   1709092 ATCCAAATCTCG
i gorGor5.CYUI01015556v1    I 4 C 0
s nomLeu3.chr6               17241385 12 - 121039945 ATCCAAATCTCG
i nomLeu3.chr6              I 4 C 0
s rheMac8.chr7               60922079 12 + 169600520 ATCCAAATCTCA
i rheMac8.chr7              I 4 C 0
s macFas5.chr7              108448820 12 - 171882078 ATCCAAATCTCA
i macFas5.chr7              I 4 C 0
s macNem1.NW_012011945v1        62197 12 -   2311642 atccaaatctca
i macNem1.NW_012011945v1    I 4 C 0
s cerAty1.NW_012002657v1        57750 12 -   1987038 atccaaatctca
i cerAty1.NW_012002657v1    I 4 C 0
s chlSab2.chr29              21138374 12 -  24206276 ATCCAAATCTCA
i chlSab2.chr29             I 4 C 0
s manLeu1.NW_012106908v1        68718 12 -   1397330 atccaaatctca
i manLeu1.NW_012106908v1    I 4 C 0
s colAng1.NW_012117110v1        76429 12 -   1784207 ATCCAAATCTCG
i colAng1.NW_012117110v1    I 4 C 0
s calJac3.chr6               22279880  6 + 158406734 --TGAGAT----
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50511032  6 +  54856640 --TGAGAT----
i saiBol1.JH378108          C 0 C 0
s mm10.chr7                  81393048 12 + 145441459 ATCTAAATCTAG
i mm10.chr7                 I 4 C 0
s dasNov3.JH570731            1848581 11 +   3943991 ATCCAAATCCA-
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40680136  6 +  42888418 I
e canFam3.chr3               54443535  0 +  91889043 C
e cebCap1.NW_016107610v1       653568  6 -   2910086 I
e otoGar3.GL873530             670017  0 -  36342412 C

a score=113706.000000
s hg38.chr15_KI270850v1_alt    371643 12 +    430880 ATTTGTTGGTCT
s panTro5.chr15              63524718 12 +  83230942 ATTTGTTGGTCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80481795 12 +  99763055 ATTTGTTGGTCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        81989 12 -   1709092 ATTTGTTGGTCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17241397 12 - 121039945 ATTTGTTGGTCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60922091 12 + 169600520 ATTTGTTGGTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108448832 12 - 171882078 ATTTGTTGGTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        62209 12 -   2311642 atttgttggtct
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        57762 12 -   1987038 atttgttggtct
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21138386 12 -  24206276 ATTTGTTGGTCT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        68730 12 -   1397330 atttgttggtct
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        76441 12 -   1784207 ATTTGTTGGTCT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22279886 12 + 158406734 ATTTGTTCCTCT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50511038 12 +  54856640 ATTTGTTCATCT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       653574 12 -   2910086 ATTTGTTCATCT
i cebCap1.NW_016107610v1    I 6 C 0
s aotNan1.NW_018505940v1     40680142 12 +  42888418 ATTTGTTCGTCT
i aotNan1.NW_018505940v1    I 6 C 0
s otoGar3.GL873530             670017 11 -  36342412 -TCTGTTGGTTC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81393060 12 + 145441459 ACCTGCTGGTTT
i mm10.chr7                 C 0 I 1371
s canFam3.chr3               54443535  8 +  91889043 gtgggatg----
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1848592  5 +   3943991 ATTCT-------
i dasNov3.JH570731          C 0 C 0

a score=984919.000000
s hg38.chr15_KI270850v1_alt    371655  91 +    430880 CAAATACAGGGACTAA-CTGATCCCC-TGACCTCTCTCCCACA-----------ATGGGACACTTT-CTAGACCCAGGTCTACACTCATACATAATAACCCT--ACT
s panTro5.chr15              63524730  91 +  83230942 CAAATACAGGGACTAA-CTGATCCCC-TGACCTCTCTCCCACA-----------ATGGGACACTTT-CTAGACCCAGGTCTACACTCATACATAATAACCCT--ACT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80481807  91 +  99763055 CAAATACAGGGACTAA-CTGATCCCC-TGACCTCTCTCCCACA-----------ATGGGACACTTT-CTAGACCCAGGTCTACACTCATACATAATAACCCT--ACT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        82001  91 -   1709092 CAAATACAGGGACTAA-CTGATCCCC-TGACCTCTCTCCCACA-----------ATGGGACACTTT-CTAGACCCAGGTCTACAATCATACATAATAACCCT--ACT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17241409  91 - 121039945 CAAATACAGGGACTAA-CTGATCCCC-CGACCTCTCTCCCACG-----------ATGGGACACTTT-CTAGACCCAGGTCTACACTCATACATAATAACCCT--ACT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60922103  91 + 169600520 CAAACACAGGGACTAA-CTGCTCCCC-CGACCCCTCTCCCACG-----------ATGGGACACGTT-CTAGACCCAGGTCTACACTCATACATAATAACCCT--ACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108448844  91 - 171882078 CAAATACAGGGACTAA-CTGCTCCCC-CGACCCCTCTCCCACG-----------ATGGGACACGTT-CTAGACCCAGGTCTACACTCATACATAATAACCCT--ACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        62221  91 -   2311642 caaatacagggactaa-ctgctcccc-cgacccctctCCCACG-----------ATGGGACACGTT-CTAGACCCAGGTCTACACTCATACATAATAACCCT--ACT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        57774  91 -   1987038 caaaTACAGGGACTAA-GTTCTCCCC-CGACCCCTCTCCCACG-----------ATGGGACACATT-CTAGACCCAGGTCTACACTCATACATAATAACCCT--ACT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21138398  91 -  24206276 CAAATACAGGGACTAA-CTGCTCCCC-CGACCCCTCTCCCATG-----------ATGGGACACGTT-CTAGACCCAGGTCTACACTCATACATAATAACCCT--ACT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        68742  91 -   1397330 caaaTACAGGGACTAA-GTTCTCCCC-CGACCCCTCTCCCACG-----------ATGGGACACGTT-CTAGACCCAGGTCTACACTCATACATAATAACCCT--ACT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        76453  91 -   1784207 CAAATACAGGGACTAA-CTGCTCTCC-CGACCCCTCTCCCATG-----------ATGGGACACTTT-CTAGACCCAGGTCTACACTCATACATAATAACCCT--ACT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22279898  89 + 158406734 CAAATCCAGGGAGTAATCTGCTTCCC-CGACCTCTCTCCCATG-----------ATAGGACACTTT-CTAGACCCAGGTCTGCACTCATACATAA---CCCT--ACT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50511050  88 +  54856640 CAAATCCAGGGAGCAACCTGCTCCCC-CGACCTCTCTCCCACC-----------ATGAGACACTTT-CTAGACCCAGATCTGCACTCATACATAA----CCT--ACT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       653586 100 -   2910086 CAAATCCAGGGAGTAATCTGCTCCCC-CGACCTCTCTCCCACCTCTCCCCCACAATGGGACACTTT-CTAGACCCAGGTCTGCACTCATACATAA---CCCT--ACT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40680154  88 +  42888418 CAAATCCAGGGAGTAACCTGCTCCCC-AGA-CTCTCTCCCATG-----------ATGGGACACTTT-CTAGACCCAGGTCTACACTCATACATAA---CCCT--ACT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             670028  89 -  36342412 TAAATCCAGAGACCAATCTGTTTTCCTCTATCTCTTTCCTACT-----------ATGGGACACTTT-CTAGGCTCAGGTCTGCATT----CACAGTATCCCC--ACT
i otoGar3.GL873530          C 0 I 263
s canFam3.chr3               54443543  87 +  91889043 caaatccagAGAACCA-CCTGTTCTC-TTGCCTCTCTCCTACC-----------CTGGGGTACTTTCCTAGA--TAAGTCTGCACTCATATCTGC---CCCA--ACT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1848597  89 +   3943991 GAGATGCCAGACCAAC-CTGCTCTCC-TG-CCTCTCTCTTACA-----------CTGGGTACTTTC-TTAGGCCCAGCTCTACACTCATACATAT---CCCCAAACT
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81393072 1371 + 145441459 I

a score=628289.000000
s hg38.chr15_KI270850v1_alt    371746 51 +    430880 CAGACCTGTTTTAT-------------CATTAA-GTTAGCAAAGGATCCCTTTTCTGCACTCAGG
s panTro5.chr15              63524821 51 +  83230942 CAGACCTGTTTTAT-------------CATTAA-GTTAGCAAAGGATCCCTTTTCTGCACTCAGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80481898 51 +  99763055 CAGACCTGTTTTAT-------------CATTAA-GTTAGCAAAGGATCCCTTTTCTGCACTCAGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        82092 51 -   1709092 CAGACCTGTTTTAT-------------CATTAA-GTTAGCAAAGGATCCCTTTTCTGCACTCAGG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17241500 51 - 121039945 CAGACCTGTTTTAT-------------CAGTAA-GTTAGCAACGGATCCCTTTTCTGCACTCAGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60922194 51 + 169600520 CAGACCTGTTTTAT-------------CAGTAA-GTTAGCAAAGGATCCCTTTTCTGCACTCAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108448935 51 - 171882078 CAGACCTGTTTTAT-------------CAGTAA-GTTAGCAAAGGATCCCTTTTCTGCACTCAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        62312 51 -   2311642 CAGACCTGTTTTAT-------------CAGTAA-GTTAGCAAAGGATCCCTTTTCTGCACTCAGG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        57865 51 -   1987038 CAGACCTGTTTTAT-------------CACTAA-GTTAGCAAAGGATCCCTTTTCTGCACTCAGG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21138489 51 -  24206276 CAGACCTGTTTTAT-------------CAGTAA-GTTAGCAAAGGATCCCTTTTCTGCACTCAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        68833 51 -   1397330 CAGACTTGTTTTAT-------------CAGTAA-GTTAGCAAAGGATCCCTTTTCTGCACTCAGG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        76544 51 -   1784207 CAGACCTGTTTTAT-------------CAGTAA-GTTAGCAAAGGATCCCTTTTCTGCACTCAGG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22279987 51 + 158406734 CAGACCTGTCTTAT-------------CAGTAA-GTTAGCAAAGTATCCATTTTCTGCACTCAGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50511138 51 +  54856640 CAGACCTGTCTTAT-------------CAGTAA-GTTAGCAAAGTATCCCTTTTCTGCACTCAGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       653686 48 -   2910086 CAGACCTG---TAT-------------CAGCAA-GTTAGCAAAGTACCCCTTTTCTGCACTCAGG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40680242 51 +  42888418 CAGACCTGTCTTAT-------------CAGTAA-GTTAGCAAAGTATCCCTTTTCTGCACTCAGG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             670380 51 -  36342412 CAGACTCGTTTTAT-------------TAGTAA-GTTACCAATGAATCCCTTTTCTCCTCTTAGG
i otoGar3.GL873530          I 263 T 314
s canFam3.chr3               54443630 44 +  91889043 CAGAC-----TTAT-------------CAGTAA-ATTAGTG--GATTCTCTTTTTACCACTTAGG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1848686 65 +   3943991 CAGATCTGTTTGTTCGCTCTTTTCCCCCAGTAATGTCAATGAATTACCTTTTTTCTCCACTCAGG
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81393072 1371 + 145441459 I

a score=28611.000000
s hg38.chr15_KI270850v1_alt    371797 2 +    430880 TC
s panTro5.chr15              63524872 2 +  83230942 TC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80481949 2 +  99763055 TC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        82143 2 -   1709092 TC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17241551 2 - 121039945 TC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60922245 2 + 169600520 TC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108448986 2 - 171882078 TC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        62363 2 -   2311642 TC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        57916 2 -   1987038 TC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21138540 2 -  24206276 TC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        68884 2 -   1397330 TC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        76595 2 -   1784207 TC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22280038 2 + 158406734 TC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50511189 2 +  54856640 TC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       653734 2 -   2910086 TC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40680293 2 +  42888418 TC
i aotNan1.NW_018505940v1    C 0 I 30
s otoGar3.GL873530             670117 2 -  36342412 TC
i otoGar3.GL873530          T 314 C 0
s canFam3.chr3               54443674 2 +  91889043 TC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1848751 2 +   3943991 TG
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81393072 1371 + 145441459 I

a score=12830.000000
s hg38.chr15_KI270850v1_alt    371799 2 +    430880 CC
s panTro5.chr15              63524874 2 +  83230942 CC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80481951 2 +  99763055 CC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        82145 2 -   1709092 CC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17241553 2 - 121039945 CC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60922247 2 + 169600520 CA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108448988 2 - 171882078 CA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        62365 2 -   2311642 CA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        57918 2 -   1987038 CA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21138542 2 -  24206276 CC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        68886 2 -   1397330 CA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        76597 2 -   1784207 CC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22280040 2 + 158406734 CC
i calJac3.chr6              C 0 I 2
s saiBol1.JH378108           50511191 2 +  54856640 CC
i saiBol1.JH378108          C 0 I 2
s cebCap1.NW_016107610v1       653736 2 -   2910086 CC
i cebCap1.NW_016107610v1    C 0 I 28
s otoGar3.GL873530             670119 2 -  36342412 CC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54443676 2 +  91889043 CC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1848753 2 +   3943991 TA
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40680295 30 +  42888418 I
e mm10.chr7                  81393072 1371 + 145441459 I

a score=6850.000000
s hg38.chr15_KI270850v1_alt    371801 1 +    430880 C
s panTro5.chr15              63524876 1 +  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80481953 1 +  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        82147 1 -   1709092 C
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17241555 1 - 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60922249 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108448990 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        62367 1 -   2311642 C
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        57920 1 -   1987038 C
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21138544 1 -  24206276 C
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        68888 1 -   1397330 C
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        76599 1 -   1784207 C
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22280044 1 + 158406734 G
i calJac3.chr6              I 2 C 0
s saiBol1.JH378108           50511195 1 +  54856640 G
i saiBol1.JH378108          I 2 C 0
s otoGar3.GL873530             670121 1 -  36342412 C
i otoGar3.GL873530          C 0 I 316
s canFam3.chr3               54443678 1 +  91889043 C
i canFam3.chr3              C 0 I 3
s dasNov3.JH570731            1848755 1 +   3943991 C
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40680295 30 +  42888418 I
e mm10.chr7                  81393072 1371 + 145441459 I
e cebCap1.NW_016107610v1       653738 28 -   2910086 I

a score=245177.000000
s hg38.chr15_KI270850v1_alt    371802 25 +    430880 -----ATACTGTGTAC-----TAAACCTATCCCAT
s panTro5.chr15              63524877 25 +  83230942 -----ATACGGTGTAC-----TAAACCTATCCCAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80481954 25 +  99763055 -----ATACTGTGTAC-----TAAACCTATCCCAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        82148 25 -   1709092 -----ATACTGTGTAC-----TAAACCTATCCCAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17241556 25 - 121039945 -----ATGCTGTGTAC-----TAAACCTATCCCAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60922250 25 + 169600520 -----ATGCTGTGTAC-----TAAACCCATCCCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108448991 25 - 171882078 -----ATGCTGTGTAC-----TAAACCCATCCCAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        62368 25 -   2311642 -----ATGCTGTGTAC-----TAAACCCATCCCAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        57921 25 -   1987038 -----ATGCTGTGTAC-----TAAACCCATCCCAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21138545 25 -  24206276 -----ATGCTGTGTAC-----CAAACCCATCCCAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        68889 25 -   1397330 -----ATGCTGTGTAC-----TAAACCCATCCCAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        76600 25 -   1784207 -----ATGCTGTGTAC-----TAAACCCATCCCAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22280045 25 + 158406734 -----GAGCTGTGTAC-----TAAAACCATCCCGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50511196 25 +  54856640 -----GAGCTGTGTAC-----TAAACCCGTCCCTT
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873530             670438 30 -  36342412 -----GAGTTGTATACTATTATAAATCCATCCCAT
i otoGar3.GL873530          I 316 I 1
s canFam3.chr3               54443682 25 +  91889043 -----GAGCTTTGTAC-----TAAACCCATCCCAT
i canFam3.chr3              I 3 I 1
s dasNov3.JH570731            1848756 30 +   3943991 ATGGAACACTTTGTAC-----TAAACCCTTCCCAT
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40680295 30 +  42888418 I
e mm10.chr7                  81393072 1371 + 145441459 I
e cebCap1.NW_016107610v1       653738 28 -   2910086 I

a score=1878.000000
s hg38.chr15_KI270850v1_alt    371827 2 +    430880 -CA
s panTro5.chr15              63524902 2 +  83230942 -CA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80481979 2 +  99763055 -CA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        82173 2 -   1709092 -CA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17241581 2 - 121039945 -CA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60922275 2 + 169600520 -CA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108449016 2 - 171882078 -CA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        62393 2 -   2311642 -CA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        57946 2 -   1987038 -CA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21138570 2 -  24206276 -CA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        68914 2 -   1397330 -CA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        76625 2 -   1784207 -CA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22280070 2 + 158406734 -CA
i calJac3.chr6              C 0 I 200
s otoGar3.GL873530             670469 1 -  36342412 -C-
i otoGar3.GL873530          I 1 C 0
s canFam3.chr3               54443708 1 +  91889043 -C-
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1848786 2 +   3943991 TC-
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40680295 30 +  42888418 I
e mm10.chr7                  81393072 1371 + 145441459 I
e cebCap1.NW_016107610v1       653738 28 -   2910086 I
e saiBol1.JH378108           50511221 0 +  54856640 C

a score=52389.000000
s hg38.chr15_KI270850v1_alt    371829 6 +    430880 TACTAG
s panTro5.chr15              63524904 6 +  83230942 TACTAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80481981 6 +  99763055 TACTAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        82175 6 -   1709092 TACTAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17241583 6 - 121039945 TACTAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60922277 6 + 169600520 TACTAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108449018 6 - 171882078 TACTAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        62395 6 -   2311642 TACTAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        57948 6 -   1987038 TACTAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21138572 6 -  24206276 TACTAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        68916 6 -   1397330 TACTAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        76627 6 -   1784207 TACTAG
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873530             670470 6 -  36342412 TACTAG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54443709 6 +  91889043 TATCAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1848788 6 +   3943991 TACCAG
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40680295 30 +  42888418 I
e mm10.chr7                  81393072 1371 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e cebCap1.NW_016107610v1       653738 28 -   2910086 I
e saiBol1.JH378108           50511221 0 +  54856640 C

a score=39516.000000
s hg38.chr15_KI270850v1_alt    371835  6 +    430880 -------GAGttc
s panTro5.chr15              63524910  6 +  83230942 -------GAGTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80481987  6 +  99763055 -------GAGttc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        82181  6 -   1709092 -------GAGttc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17241589  6 - 121039945 -------GAGTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60922283  6 + 169600520 -------AAGTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108449024  6 - 171882078 -------AAGTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        62401  6 -   2311642 -------AAGTTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        57954  6 -   1987038 -------AAGTTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21138578  6 -  24206276 -------AAGTTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        68922  6 -   1397330 -------AAGTTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        76633  6 -   1784207 -------AAGTTC
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873530             670476 13 -  36342412 TATCAAAGAGTTC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54443715  6 +  91889043 -------GGGTTC
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018505940v1     40680295 30 +  42888418 I
e mm10.chr7                  81393072 1371 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1848794  0 +   3943991 C
e cebCap1.NW_016107610v1       653738 28 -   2910086 I
e saiBol1.JH378108           50511221  0 +  54856640 C

a score=-5832.000000
s hg38.chr15_KI270850v1_alt    371841  7 +    430880 -----ttttttt
s panTro5.chr15              63524916  7 +  83230942 -----ttttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80481993  7 +  99763055 -----ttttttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        82187  7 -   1709092 -----ttttttt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17241595 12 - 121039945 AATTGttttttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60922289  3 + 169600520 -----AAt----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108449030  3 - 171882078 -----AAt----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        62407  3 -   2311642 -----AAT----
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        57960  7 -   1987038 -----AAttctt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21138584  7 -  24206276 -----AAttctt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        68928  5 -   1397330 -----AAttc--
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        76639  7 -   1784207 -----AAttctt
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873530             670489  7 -  36342412 -----TATTCTT
i otoGar3.GL873530          C 0 T 374
e aotNan1.NW_018505940v1     40680295 30 +  42888418 I
e mm10.chr7                  81393072 1371 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1848794  0 +   3943991 C
e canFam3.chr3               54443721  0 +  91889043 C
e cebCap1.NW_016107610v1       653738 28 -   2910086 I
e saiBol1.JH378108           50511221  0 +  54856640 C

a score=45277.000000
s hg38.chr15_KI270850v1_alt    371848 9 +    430880 ttttttttt
s panTro5.chr15              63524923 9 +  83230942 ttttttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80482000 9 +  99763055 ttttttttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        82194 9 -   1709092 ttttttttt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17241607 9 - 121039945 ttttttttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60922292 7 + 169600520 --ttttttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108449033 7 - 171882078 --ttttttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        62410 8 -   2311642 -Attttttt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        57967 9 -   1987038 ttttttttt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21138591 9 -  24206276 ttttttttt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        68933 9 -   1397330 ttttttttt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        76646 9 -   1784207 ttttttttt
i colAng1.NW_012117110v1    C 0 C 0
e aotNan1.NW_018505940v1     40680295 30 +  42888418 I
e mm10.chr7                  81393072 1371 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1848794 0 +   3943991 C
e canFam3.chr3               54443721 0 +  91889043 C
e cebCap1.NW_016107610v1       653738 28 -   2910086 I
e otoGar3.GL873530             670496 374 -  36342412 T
e saiBol1.JH378108           50511221 0 +  54856640 C

a score=31980.000000
s hg38.chr15_KI270850v1_alt    371857 6 +    430880 tttttt
s panTro5.chr15              63524932 6 +  83230942 tttttt
i panTro5.chr15             C 0 I 4
s panPan2.chr15              80482009 6 +  99763055 tttttt
i panPan2.chr15             C 0 I 2
s gorGor5.CYUI01015556v1        82203 2 -   1709092 tt----
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17241616 6 - 121039945 tttttt
i nomLeu3.chr6              C 0 I 2
s rheMac8.chr7               60922299 6 + 169600520 tttttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108449040 6 - 171882078 tttttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        62418 6 -   2311642 tttttt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        57976 6 -   1987038 tttttt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21138600 6 -  24206276 tttttt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        68942 6 -   1397330 tttttt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        76655 6 -   1784207 tttttt
i colAng1.NW_012117110v1    C 0 M 3842
s otoGar3.GL873530             670122 6 -  36342412 tttttt
i otoGar3.GL873530          T 374 C 0
e aotNan1.NW_018505940v1     40680295 30 +  42888418 I
e mm10.chr7                  81393072 1371 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1848794 0 +   3943991 C
e canFam3.chr3               54443721 0 +  91889043 C
e cebCap1.NW_016107610v1       653738 28 -   2910086 I
e saiBol1.JH378108           50511221 0 +  54856640 C

a score=1141313.000000
s hg38.chr15_KI270850v1_alt    371863 251 +    430880 gagacacagtctcactctgttgccccggctggagtgcagtggcgtgatctggactcaccgcaagctccgcctcccgggttcacgccattctcctgcctcagcctccctgagtagctcggacaacagacactggcca--ccacgac-agctaattttttgtatttttagtagagatggggtttcatcatgttaaccaggatggtcttgatctcctgaccttg--tgatccgcccgcctcagcctcccaaa--------------------------gtgctg------------------------------T
s panTro5.chr15              63524942 251 +  83230942 gagacacagtctcactctgttgccccggctggagtgcagtggcgcgatctggactcaccgcaagctccgcctcccgggttcacgccattctcctgcctcagcctccctgagtagctcggacaacagacactggcca--ccacgac-agctaattttttgtatttttagtagagatggggtttcatcatgttaaccaggatggtctcgatctcctgaccttg--tgatccgcccacctcggcctcccaaa--------------------------atgctg------------------------------T
i panTro5.chr15             I 4 C 0
s panPan2.chr15              80482017 251 +  99763055 gagacacagtctcactctgttgccccggctggagtgcagtggcgcgatctggactcaccgcaagctccgcctcccgggttcacgccattctcctgcctcagcctccctgagtagctcggacaacagacactggcca--ccacgac-agctaattttttgtatttttagtagagatggggtttcatcatgttaaccaggatggtctcgatctcctgaccttg--tgatccgcccacctcggcctcccaaa--------------------------atgctg------------------------------T
i panPan2.chr15             I 2 C 0
s gorGor5.CYUI01015556v1        82205 250 -   1709092 gagacacagtctcactctgttgccccggctggagtg-agtggcgcgatctggattcaccgcaagctctgcctcccgggttcacgccattctcctgcctcagcctccctgagtagctcggacaacagacactggcca--ccaagac-agctaattttttgtatttttagtagagatggggtttcatcgtgttagccaggatggtctcgatctcctgaccttg--tgatctgcccgcctcggcctcccaaa--------------------------gttctg------------------------------T
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17241624 251 - 121039945 gagacgcagtctcactctgttgcccaggctggagtgcactggcacgatcttgactcaccgcaagctctgcctcccgggttcacgccattctcctgcctcagcctccctgagtagctgggacaacagacgccggcca--ccacgac-ggctaattttctgtatttttagtagcgatggggtttcatcatgttagccaggatggtctcgatctcctgacctcg--tgatccgcccgcctcggcttcccaaa--------------------------gtgctg------------------------------T
i nomLeu3.chr6              I 2 C 0
s rheMac8.chr7               60922305 251 + 169600520 gagacggagtctccctctgtcgcccaggctggagtgcagtcgtgcgatccccactcactgcaagctctgcctcccgggttcacgccattctcctgcctcagtct-cctgagtagctgggactgcagacgcccgcca--ccacgcctggctacgtttttgtatttttagtagagactgggtttcaccgtgttagccaggatggtctcgatctcctgacctca--tgatctgcccgcctcggcctcccaaa--------------------------gtgctg------------------------------C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108449046 251 - 171882078 gagacagagtctccctctgtcgcccaggctggagtgcagtcgtgcgatccccactcactgcaagctctgcctcccgggttcacgccattctcctgcctcagtct-cctgagtagctgggactgcagacacccgcca--ccacgcctggctacgtttttgtatttttagtagagactgggtttcaccgtgttagccaggatggtctcgatctcctgacctca--tgatctgcccgcctcggcctcccaaa--------------------------gtgctg------------------------------C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        62424 281 -   2311642 gagacggagtctccctctgtcgcccaggctggagtgcagtcgtgcgatccccactcactgcaagctctgcctcccgggttcacgccattctcctgcctcagtct-cctgagtagctgggactgcagacgcccgcca--ccacgcctggctacgtttttgtatttttagtagagactgggtttcaccgtgttagccagcatggtctcgatctcctgacctca--tgatctgcccgcctcggcctcccaaa--------------------------gtgctgcagttcaattcttgagccaccgcgcccggcc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        57982 251 -   1987038 gagacggagtctccctctgtcgcccaggcttgagtgcagtcgtgcgatccccactcactgcaagctctgcctcccgggttcacgccattctcctgcctcagtct-cctgagtagctgggactgcagatgcctgcca--ccacgcctggctacgtttttgtatttttagtagagactgggtttcaccgtgttagccaggatggtctcgatctcctgacctca--tgatctgcccgcctcggcctcccaaa--------------------------gtgctg------------------------------C
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21138606 251 -  24206276 gagacggagtctccctctgtcgcccaggctggagtgcagtcgtgcgatccccactcactgcaagctctgcctcccgggtttacgccattctcctgcctcagtct-cctgagtagctgggactgcagacgcccgcca--ccatgcctggctacttttttgtatttttagtagagactgggtttcaccgtgttagccaggatggtctcgatctcctgacctca--tgatctgcctgcctcagccccccaaa--------------------------gtgctg------------------------------C
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        68948 251 -   1397330 gagacggagtctccctctgtcgcccaggcttgagtgcagtcgtgcgatccccactcactgcaagctctgcctcccgggttcacgccattctcctgcctcagtct-cctgagtagctgggactgcagatgcctgcca--ccacgcctggctacgtttttgtatttttagtagagactgggtttcaccgtgttagccaggatggtctcgatctcctgacctca--tgatctgcccacctcggcctcccaaa--------------------------gtgctg------------------------------C
i manLeu1.NW_012106908v1    C 0 C 0
s otoGar3.GL873530             670128 248 -  36342412 ------gagtct---tctgttgcctgggctagaaggcaatggtgtcatcatagctcactacaa--------------ctttaagatagcatccagcc--------ccccgatagctgggattacaggtgtgtgctgatttttacctggctaatttttc-tattttttgtagagacagggtttcac--tgttgctcaggctgttcccaatctcatgatctcaagggatcctcccacctcagcctaccaaatggtaggattacaggagtgagctgccgtgctg------------------------------g
i otoGar3.GL873530          C 0 I 105
e aotNan1.NW_018505940v1     40680295  30 +  42888418 I
e mm10.chr7                  81393072 1371 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1848794   0 +   3943991 C
e canFam3.chr3               54443721   0 +  91889043 C
e cebCap1.NW_016107610v1       653738  28 -   2910086 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M
e saiBol1.JH378108           50511221   0 +  54856640 C

a score=29183.000000
s hg38.chr15_KI270850v1_alt    372114 5 +    430880 AGGAG
s panTro5.chr15              63525193 5 +  83230942 AGGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80482268 5 +  99763055 AGGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        82455 5 -   1709092 AGGAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17241875 5 - 121039945 AAGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60922556 5 + 169600520 AGGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108449297 5 - 171882078 AGGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        62705 5 -   2311642 AGGAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        58233 5 -   1987038 AGGAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21138857 5 -  24206276 AGGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        69199 5 -   1397330 AGGAG
i manLeu1.NW_012106908v1    C 0 C 0
s otoGar3.GL873530             670481 5 -  36342412 AAGAG
i otoGar3.GL873530          I 105 C 0
e aotNan1.NW_018505940v1     40680295 30 +  42888418 I
e mm10.chr7                  81393072 1371 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1848794 0 +   3943991 C
e canFam3.chr3               54443721 0 +  91889043 C
e cebCap1.NW_016107610v1       653738 28 -   2910086 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M
e saiBol1.JH378108           50511221 0 +  54856640 C

a score=16666.000000
s hg38.chr15_KI270850v1_alt    372119 3 +    430880 TTT
s panTro5.chr15              63525198 3 +  83230942 TTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80482273 3 +  99763055 TTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        82460 3 -   1709092 TTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17241880 3 - 121039945 TTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60922561 3 + 169600520 TTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108449302 3 - 171882078 TTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        62710 3 -   2311642 TTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        58238 3 -   1987038 TTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21138862 3 -  24206276 TTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        69204 3 -   1397330 TTC
i manLeu1.NW_012106908v1    C 0 C 0
s otoGar3.GL873530             670486 3 -  36342412 TTC
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH570731            1848794 3 +   3943991 TTC
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40680295 30 +  42888418 I
e mm10.chr7                  81393072 1371 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e canFam3.chr3               54443721 0 +  91889043 C
e cebCap1.NW_016107610v1       653738 28 -   2910086 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M
e saiBol1.JH378108           50511221 0 +  54856640 C

a score=1338649.000000
s hg38.chr15_KI270850v1_alt    372122 218 +    430880 AATTCTTAACACTAACTCCCTCACCCT-CCCCACTACTCTCTCC-ACAATCTGCT-ACTTATTCAGCAGAAAGTCAATTTCACATTCGGGTGTTTCTAAGATTTCGCTGC--TATGTGC-------ATATATTATTTTCAAAGGCGATAATTTTACTTCTTACCCATGGAGAGCAAAAAAGACGACTGCTGATTCAAGGCTAGCATCATCCAATCTACTGCTTATGGTAT
s panTro5.chr15              63525201 218 +  83230942 AATTCTTAACACTAACTCCCTCACCCT-CCCCACTACTCTCTCC-ACAATCTGTT-ACTTATTCAGCAGAAAGTCAATTTCACATTCGGGTGTTTCTAAGATTTCGCTGC--TATGTGC-------ATATATTATTTTCAAAGGTGATAATTTTACTTCTTACCCATGGAGAGCAAAAAAGACGACTGCTGATTCAAGGCTAGCATCATCCAATCTACTGCTTATGGTAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80482276 218 +  99763055 AATTCTTAACACTAACTCCCTCACCCT-CCCCACTACTCTCTCC-ACAATCTGTT-ACTTATTCAGCAGAAAGTCAATTTCACATTCGGGTGTTTCTAAGATTTCGCTGC--TATGTGC-------ATATATTATTTTCAAAGGTGATAATTTTACTTCTTACCCATGGAGAGCAAAAAAGACGACTGCTGATTCAAGGCTAGCATCATCCAATCTACTGCTTATGGTAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        82463 218 -   1709092 AATTCTTAACACTAACTCCCTCACCCT-CCCCACTACTCTCTCC-ACAATCTGCT-ACTTATTCAGCAGAAAGTCAATTTCACATTCGGGTGTTTCTAAGATTTCGCTGC--CATGTGC-------ATATATTATTTTCAAAGGCGATAATTTTACTTCTTACCCATGGAGAGCAAAAAAGACGACTGCTGACTCAAGGCTAGCAACATCCAATCTATTGCTTATGGTAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17241883 218 - 121039945 AATTCTTAACACTAACTCCCTCACCCT-CCCCACTACTCTCTCC-ACAATCTGCT-ACTTATTCAGCAGAAAGTCAATTTCACATTCTGGTGTTTCTAAGATTTTGCTGC--CATGTGC-------ATATATTATTTTCAAAGGTGATAATTTTACTTCTTACCCATGGAGAGCAAAAAAGACGACTGCTGATTCAAGGCTAGCATCATCCAATCTATTGCTTATGGTAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60922564 219 + 169600520 AATTCTTAACACTAACTCCCTCCCCCTCCCCCACTACTCTCTCC-ACAATCTGCT-ACTTATTCAGCAGAAAGTCAATTTCACATTCTGGTGTTTCTAAGATTTTGCTGC--CATGTGC-------ATATATTACTTTCAAAGGTGATAATTTTACTTCTTACCCATGGAGAGCAAAAAAGACGACTGCTGATTCAAGGCTAGCATCATCCAATCTATTGCTTATGGAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108449305 218 - 171882078 AATTCTTAACACTAACTCCCTCACCCT-CCCCACTACTCTCTCC-ACAATCTGCT-ACTTATTCAGCAGAAAGTCAATTTCACATTCTGGTGTTTCTAAGATTTTGCTGC--CATGTGC-------ATATATTACTTTCAAAGGTGATAATTTTACTTCTTACCCATGGAGAGCAAAAAAGACGACTGCTGATTCAAGGCTAGCATCATCCAATCTATTGCTTATGGTAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        62713 218 -   2311642 AATTCTTAACACTAACTCCCTCACCCT-CCCCACTACTCTCTCC-ACAATCTGCT-ACTTATTCAGCAGAAAGTCAATTTCACATTCTGGTGTTTCTAAGATTTTGCTGC--CATGTGC-------ATATATTACTTTCAAAGGTGATAATTTTACTTCTTACCCATGGAGAGCAAAAAAGACAACTGATGATTCAAGGCTAGCATCATCCAATCTATTGCTTATGGTAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        58241 218 -   1987038 AATTCTTAACACTAACTCCCTCACCCT-CCCCACTACTCTCTCC-ACAATCTGCT-ACTTATTCAGCAGAAAGTCAATTTCACATTCTGGTGTTTCTATGATTTTGCTGC--CATGTGC-------ATATATTACTTTCAAAGGTGATAATTTTACTTCTTACCCATGGAGAGCAAAAAAGACGACTGCTGATTCAAGGCTAGCATCATCCAATCTATTGCTTATGGTAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21138865 218 -  24206276 AATTCTTAACACTAACTCCCTCACCCT-CCCCACTACTCGCTCC-ACAATCTGCT-ACTTATTCAGCAGAAAGTCAATTTCACATTCTGGTGTTTCTAAGATTTTGCTGC--CATGTGC-------ATATATTACTTTCAAAGGTGATAATTTTACTTCTTACCCATGGAGAGCAAAAAAGACAACTGCTGATTTAAGGCTAGCATCATCCAATCTATTGCTTATGGTAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        69207 218 -   1397330 AATTCTTAACACTAACTCCCTCACCCT-CCCCACTACTCTCTCC-ACAATCTGCT-ACTTACTCAGCAGAAAGTCAATTTCACATTCTGGTGTTTCTAAGATTTTGCTGC--CATGTGC-------ATATATTACTTTCAAAGGTGATAATTTTACTTCTTACCCATGGAGAGCAAAAAAGACGACTGCTGATTCAAGGCTAGCATCATCCAATCTATTGCTTATGGTAT
i manLeu1.NW_012106908v1    C 0 C 0
s otoGar3.GL873530             670489 169 -  36342412 TATTCTTAACCGTAGAT-CCTTACTCT-ACCCTTTACTCTCTCC-ACAATTTCCTAATTTTTTCAGCAAAAAGTCATTTTCACAATCTGGTGTTTCCAAAACTTCATTGT--TATGTGC-------ATATACTATCTTTAAAGGTGATCATTTCACTTTTTCCC-------------AAGGATGACTGCT------------------------------------ATAT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54443721 205 +  91889043 AATTTTTAACAATAGCTTCTC-------TCCTATCATCCTCCCC-CAAATCTCCC-AATTTTTCAGCAAAATGTCAAGTTCACATTCTGGTGTTTCCAAGATTCCACTGCCTCATGTGCGTGTTATGTGTATTATTTTTGAATGTGACAATTT-AATTCTTCCCCATGGA----AAACGAGAGCACTGCTGATTCA-----------ACCTAATTTATGGCTCCTGGTAT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1848797 204 +   3943991 AATTCTCAGTACTAGTTCCACCCTCTC-TCCCCCAACCCCATCCTCCAACTTCCC-ATTTATTCAGC--AAAGTCAATTTCCCATTCTGGTGTTTCTAACATTCCACTGC--AATGTGT-------A-ATATTGTTTTTGAGGATGACAATTTCACTTC------ACAGAGACTGAAAAAGACAACT--TTGGTCAAGCCCAGC----TGCACTCTCTGGCTTTTAGTAT
i dasNov3.JH570731          C 0 I 356
e aotNan1.NW_018505940v1     40680295  30 +  42888418 I
e mm10.chr7                  81393072 1371 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e cebCap1.NW_016107610v1       653738  28 -   2910086 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M
e saiBol1.JH378108           50511221   0 +  54856640 C

a score=1368237.000000
s hg38.chr15_KI270850v1_alt    372340 243 +    430880 GGGGGAGTTCTGAAGCACGCCATCCTGAAGACTCTGGTTCAGAGTCCTTGAATACAACATGCCATC-TAGGTTGTAGGTAACAACTAGTTTTA-GTAAAACTAG-TATAACCAAAACACAATGAAAC--ATTACTTTACCTGACACTACACTGTTCAAA-TTGGGGTCTGCAGAAGTTCCTTAAACAGTACATCAAATTGGAGACCCTT-------------TACAGTGCCAATCACGACTGCATCTACATAATATAAAAGC
s panTro5.chr15              63525419 243 +  83230942 GGGGGAGTTCTGAAGCACGCCATCCTGAAGACTCTGGTTCAGAGTCCTTGAATACAACATGCCATC-TAGGTTGTAGGTAACAACTAGTTTTA-GTAAAACTAG-TATAACCAAAACACAATGAAAC--ATTACTTTACCTGACACTACACTGTTCAAA-TTGGGGTCTGCAGAAGTTCCTTAAACAGTACATCAAATTGGAGACCCTT-------------TACAGTGCCAATCACGATTGCATCTACATAATATAAAAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80482494 243 +  99763055 GGGGGAGTTCTGAAGCACGCCATCCTGAAGACTCTGGTTCAGAGTCCTTGAATACAACATGCCATC-TAGGTTGTAGGTAACAACTAGTTTTA-GTAAAACTAG-TATAACCAAAACACAATGAAAC--ATTACTTTACCTGACACTACACTGTTCAAA-TTGGGGTCTACAGAAGTTCCTTAAACAGTACATCAAATTGGAGACCCTT-------------TACAGTGCCAATCACGATTGCATCTACATAATATAAAAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        82681 243 -   1709092 GGGGGAGTTCTGAAGCACACCATCCTGAAGACTCTGGTTCAGAGTCCTTGAATACAACATGCCATC-TAGGTTGTAGGTAACAACTAGTTTTA-GTAAAACTAG-TATAACCAAAACACAATGAAAC--ATTACTTTACCTGACACTACACTGTTCAAA-TTGGGGTCTGCAGAAGTTCCTTAAACAGTACATCAAATTGGAGACCCTT-------------TACAGTGCCAACCACGATTGCATCTACAGAATATAAAAGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17242101 244 - 121039945 GGGGGAGTTCTGAAGCAGACCATCCTGAAGACTCTGGTTCAGAGTCCTTGAATACAACATGCCATC-TAGGTTGTAGGTAACAACTAGTTTTA-GTAAAACTAG-TATAACCAAAACACAATGAAAC--ATTACTTTACCTGACACTACACTGTTCAAATTTGGGGTCTGCAGAAGTTCCTTAAACAGTACATTAAATTGGAGACCCTT-------------TACAGTGCCAACCACAATTGCATCTACAGAATATAAAAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60922783 244 + 169600520 GGGAGAGTTCTGAAGCAGACCATCCTGAAGACTATGGTTCAGAGTCCTTGAATATAACATGCCATC-TAGGTTGTAGGTAAAAACTAGTTTTA-GTAAAACTAG-TATAACTAAAACACAATGAAAC--GTTACTTTACCTGACACTACGCTGTTCAAATTTGGGGTCTGCAGAAGTTCCTTAAACATCACATCAAATTGGAGACCCTT-------------TACAGTGCCAACCACAAATGCATCTACAGAATATAGAAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108449523 244 - 171882078 GGGAGAGTTCTGAAGCAGACCATCCTGAAGACTATGGTTCAGAGTCCTTGAATATAACATGCCATC-TAGGTTGTAGGTAAAAACTAGTTTTA-GTAAAACTAG-TATAACTAAAACACAATGAAAC--GTTACTTTACCTGACACTACGCTGTTCAAATTTGGGGTCTGCAGAAGTTCCTTAAACATCACATCAAATTGGAGACCCTT-------------TACAGTGCCAACCACAAATGCATCTACAGAATATAAAAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        62931 244 -   2311642 GGGAGAGTTCTGAAGCAGACCATCCTGAAGACTATGGTTCAGAGTCCTTGAATATAACATGCCATC-TAGGTTGTAGGTAAAAACTAGTTTTA-GTAAAACTAG-TATAACTAAAACACAATGAAAC--GTTACTTTACCTGACACTACGCTGTTCAAATTTGGGGTCTGCAGAAGTTCCTTAAACATCACATCAAATTGGAGACCCTT-------------TACAGTGCCAACCACAAATGCATCTACAGAATATAAAAGC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        58459 244 -   1987038 GGGAGAGTTCTGAAGCAGACCATCCTGAAGACTATGGTTCAGAGTCCTTGAATGTAACATGCCATC-TAGGTTGTAGGTAAAAACTAGTTTTA-GTAAAACTAG-TATAACTAAAACACAATGAAAC--GTTACTCTACCTGACACTACGCTGTTCAAATTTGGGGTCTGCAGAAGTTCCTTAAACATCACATCAAATTGGAGACCCTT-------------TACAGTGCCAACCACAAATGCATCTACAGAATATAAAAGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21139083 246 -  24206276 GGGAGAGTTCTGAAGCAGACCATCCTGAAGACTATGGTTCAGAGTCCTTGAATATAACATACCATC-TAGGTTGTAGGTAAAAACTAGTTTTA-GTAAAACTAG-TATAACTAAAACACAATGAAACGTGTTTCACTACCTGACACTATGCTGTTCAAATTTGGGGTCTGCAGAAGTTCCTTAAACATCACATCAAATTGGAGACCCTT-------------TACAGTGCCAACCACAAATGCATCTATAGAATATAAAAGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        69425 244 -   1397330 GGGAGAGTTCTGAAGCAGACCATCCTGAAGACTATGGTTCAGAGTCCTTGAATATAACATGCCATC-TAGGTTGTAGGTAAAAACTAGTTTTA-GTAAAACTAG-TATAACTAAAACACAATGAAAC--GTTACTCTACCTGACACTACGCTGTTCAAATTTGGGGTCTGCAGAAGTTCCTTAAACATCACATCAAATTGGAGACCCTT-------------TACAGTGCCAACCACAAATGCATCTACAGAATATAAAAGC
i manLeu1.NW_012106908v1    C 0 C 0
s otoGar3.GL873530             670658 255 -  36342412 AGGGGC-TTTTGAAATAGACTAGGTTGAAGATTCTGGTATAGAGTCCTGTTACAGTACATATTGTC-CAGGTACTGCCCCCCAAGCTGTTTT--GTAAAACTAGTTAAAACCAAAACACAATGTAAT--GTTACTCTACCTGATGCTACACTGTTCAAATTCTGTGTCTGCAGAAGTTCCCTCAACATTACACCAAACTGGAGATCCTTATTGGTGACCCCCCACAGTGCCAATCCC-AGTGAACTTAGACAATATAAAAGC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54443926 227 +  91889043 -GGCCATATCTGAAACAGA-GGGCTTGAAGACCCTGATCCAGAGTCTTGGAATATAACATGCTGCCAGAGGCTATGCCTGA------GTTGCATGTACAACTAG-TGTAATCAAAACACAATGAAGT--G----------TGATGCTCTGCTGTTCAAATCTGGAGTTTGCACAGGTTCCTTCAACGTGACACCAAATTAGAAACCCTT--------------ACAGTGCCAAACCACAGCAGATCTAGAGAATATAAAAGC
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018505940v1     40680295  30 +  42888418 I
e mm10.chr7                  81393072 1371 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1849001 356 +   3943991 I
e cebCap1.NW_016107610v1       653738  28 -   2910086 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M
e saiBol1.JH378108           50511221   0 +  54856640 C

a score=90914.000000
s hg38.chr15_KI270850v1_alt    372583 9 +    430880 CAGTTATTT
s panTro5.chr15              63525662 9 +  83230942 CAGTTATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80482737 9 +  99763055 CAGTTATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        82924 9 -   1709092 CAGTTATTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17242345 9 - 121039945 CAGTTATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60923027 9 + 169600520 CAGTTATTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108449767 9 - 171882078 CAGTTATTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        63175 9 -   2311642 CAGTTATTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        58703 9 -   1987038 CAGTTATTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21139329 9 -  24206276 CAGTTATTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        69669 9 -   1397330 CAGTTATTT
i manLeu1.NW_012106908v1    C 0 C 0
s saiBol1.JH378108           50511221 9 +  54856640 CAGTTATTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       653766 9 -   2910086 CAGTTATTT
i cebCap1.NW_016107610v1    I 28 C 0
s aotNan1.NW_018505940v1     40680325 9 +  42888418 CAGTTATTT
i aotNan1.NW_018505940v1    I 30 C 0
s otoGar3.GL873530             670913 9 -  36342412 CAGTGAttt
i otoGar3.GL873530          C 0 I 1286
s canFam3.chr3               54444153 9 +  91889043 TAGTGATTC
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81393072 1371 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1849001 356 +   3943991 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=1043652.000000
s hg38.chr15_KI270850v1_alt    372592 143 +    430880 AAAACAGGAAGGCAgggtat---------ttccatat--------agagggtaaattggtaca---------------------------aca-ttctggagagcaatctgacaaaaacattgaaagcttc-aaaagat--ttattctttgataaagaaatactacttttagaaatttatcctatgtccaa
s panTro5.chr15              63525671 145 +  83230942 AAAACAGGAAGGCAgggtat---------ttccatat--------agagggtaaattggtaca---------------------------aca-ttctggagagcaatctgacaaaaacattgaaagcttc-aaaagatatttattctttgataaagaaatactacttttagaaatttatcctatgtccaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80482746 145 +  99763055 AAAACAGGAAGGCAgggtat---------ttccatat--------agagggtaaattggtaca---------------------------aca-ttctggagagcaatctgacaaaaacattgaaagcttc-aaaagatatttattctttgataaagaaatactacttttagaaatttatcctatgtccaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        82933 145 -   1709092 AAAACAGGAAGGCAgggtat---------ttccatat--------agagggtaaattggtaca---------------------------aca-ttctggagagcaacctgacaaaaacattgaaagcttc-aaaagatatttattctttgataaggaaatactacttttagaaatttatcctatgtccaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17242354 145 - 121039945 AAAACAGGAAGGCAGGGTAT---------GTCCATAT--------Agagggtaaattggtata---------------------------aca-ttctggagagtaatctgacaaaaacattgaaagcttc-gaaagatatttattctttgataaagaaatactacttttacaaatttatcctatgtccaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60923036 155 + 169600520 AAAACAGGGGGGCAgggtatttccatatattccatat--------agagagtaagttggtaca---------------------------aca-ttgtggagagtaatctgacaaaaacatggaaagctttgaaaagatatttattatttgataaagaaatactacttttagaaattcatcctatgtccaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108449776 155 - 171882078 AAAACAGGAGGGCAgggtatttccatatattccatat--------agagagtaagttggtaca---------------------------aca-ttgtggagagtaatctgacaaaaacatggaaagcttcgaaaagatatttattatttgataaagaaatactacttttaaaaattcatcctatgtccaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        63184 155 -   2311642 AAAACAGGAGGGCAgggtatttccatatattccatat--------agagagtaagttggtaca---------------------------aca-ttgtggagagtaatctgacaaaaacatggaaagcttcgaaaagatatttattatttgataaagaaatactacttttagaaattcatcctatgtccaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        58712 146 -   1987038 AAAACAGGAGGGCAGGGTAT---------TTCCATAT--------Agagagtaaattggtaca---------------------------aca-ttgtggagagtaatctgacaaaaacatggaaagctttgaaaagatatttattatttgataaagaaatactacttttagaaattcatcctatgtccaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21139338 146 -  24206276 AAAACAGGAGGGCAGGGTAT---------TTCCATAT--------Agagagtaaactggtaca---------------------------aca-ttgtggagagtaatctgacaaaaacatggaaagcttcaaaaagatatttattatttgataaagaaatactacttttagaaattcatcctatgtccaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        69678 146 -   1397330 AAAACAGGAGGGCAGGGTAT---------TTCCATAT--------Agagagtaaattggtaca---------------------------aca-ttgtggagagtaatctgacaaaaacatggaaagctttgaaaagatatttattatttgataaagaaatactacttttagaaattcatcctatgtccaa
i manLeu1.NW_012106908v1    C 0 C 0
s saiBol1.JH378108           50511230 170 +  54856640 AAAACAGAAGGGCAGTGCAT---------TTTCATAT--------AGA--GTAAATTAGTACATTTCCGGAGAGAAATGTACTAATTAGTACATTTCCGGAGAGAAATCTGACGAAAATATTGAAAGCTTC-AAAAGATAGTTATTCTTTGATAAATAAATTCTACTTTTAGAAATGTATTCTATGTCC-A
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       653775 144 -   2910086 AAAACAGAAGGGCAGTGTAT---------TTTCATAT--------aga--gtaaattggtacg---------------------------acatttctggagagaaatctgacaaaaacattgaaagcttc-aaaagatagttactctttgataaataaattctacttttagaaatgtattctatgtccaa
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40680334 144 +  42888418 AAAATAAAAGGGCAGGGTAT---------TTTCATAT--------aga--gtaaattggtaca---------------------------acatttctggagagaaatctgacgaaaacattaaaagcttc-aaaagatagttattctttgataaataaattctacttttagaaatgtatcctatgtccaa
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54444162 145 +  91889043 ---TTAAAAGGAGTAGGTGT---------TTTCATATAATATGGAAAAGAGGACTCtggtaca---------------------------agatttctggaaggtgatctgat--atacactcaaaacttt-gaaagatactta---tctgataagg-aattttacttctagagatttattctatgtccaa
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81393072 1371 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1849001 356 +   3943991 I
e otoGar3.GL873530             670922 1286 -  36342412 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=856597.000000
s hg38.chr15_KI270850v1_alt    372735 104 +    430880 ataatcacagatgcaggcaaaagctttaACTTCAGGTACTTCTTATAAGTGTATAAAATAGGCACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ACGAAAA--CTGAATGC----------------------------ca
s panTro5.chr15              63525816 104 +  83230942 ataatcacagatgcaggcaaaagctttaACTTCAGGTACTTCTTGTAAGTGTATAAAATAGGCACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ACAAAAA--CTGAATGC----------------------------ca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80482891 104 +  99763055 ataatcacagatgcaggcaaaagctttaACTTCAGGTACTTCTTGTAAGTGTATAAAATAGGCACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ACAAAAA--CTGAATGC----------------------------ca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        83078 104 -   1709092 ataatcacagatgcaggcaaaagctttaACTTCAGGTACTTCTTATAAGTGTATAAAATAGGCACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ATGAAAA--CTGAATGC----------------------------ca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17242499  93 - 121039945 ataatcacagatgcaggcaaaagctttaACTTCAGGTACTTATT---AGTGTATAAAATAGGCACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ACGAAAA--CT------------------------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60923191 104 + 169600520 ataatcacagatgcaggcaaatgctttaACTTCAGGTACTTCTTATTAGTGTATAAAATAGGCACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ACGAAAA--CTGAAAGC----------------------------ca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108449931 104 - 171882078 ataatcacagatgcaggcaaatgctttaACTTCAGGTACTTCTTATTAGTGTATAAAATAGGCACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ACGAAGA--CTGAAAGC----------------------------ca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        63339 104 -   2311642 ataatcacagatgcaggcaaatgctttaACTTCAGGTACTTCTTATTAGTGTATAAAATAGGCACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ACGAAGA--CTGAAAGC----------------------------ca
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        58858 104 -   1987038 ataatcacagatgcaggcaaaTGCTTTAACTTCAGGTACTTCTTATTAGTGTATAAAATAGGCACTTATTTAAACAAA----CTCCAA--------AAT------------------------------------ACGAAGA--CTGAAAGC----------------------------ca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21139484 104 -  24206276 ataatcacagatgcaggcaaatgctttaACTTCAGGTACTTCTTATTAGTGTATAAAATAGGCACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ACGAAGA--CTGAAAGC----------------------------ca
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        69824 104 -   1397330 ataatcacagatgcaggcaaaTGCTTTAACTTCAGGTACTTCTTATTAGTGTATAAAATAGGCACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ACGAAGA--CTGAAAGC----------------------------ca
i manLeu1.NW_012106908v1    C 0 C 0
s saiBol1.JH378108           50511400 104 +  54856640 ATAATCACGGATGTAGGCAAAAGCTTTAACTTCAAGTACTTCTTACTGGTATATGAAATAGACACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ATGAAGA--CTGAATGC----------------------------ca
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       653919 104 -   2910086 ataatcacagatgtaggcaaaagctttaACTTCAAGTACTTCTTACTGGTGTATGAAATAGACACCTATTTAAACAAA----CTCCAA--------AAT------------------------------------ATGAAGA--CTGAATGC----------------------------ca
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40680478 104 +  42888418 ataatcacagatgtaggcaaaagtttTAACTTCAAGTACTTCTTACTGGTGTATGAAATAGACACCTATTTAAACAAA----CTCGAA--------AAT------------------------------------ATGAAGA--CTGAATGC----------------------------ca
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81394443 104 + 145441459 ATAAGCACAGATGTA-GCAAAGGTTTTAACTTGAGGTGCTCCTCATTAGTGTATAAAACAGATACTTATTTTTATCAG-----TCTGA--------ATT------------------------------------ATGGAAACCCTGAATTC----------------------------TA
i mm10.chr7                 I 1371 I 23
s canFam3.chr3               54444307 179 +  91889043 ataaccaaagatgtagccaaa-gttttaCCTTTAGGTACTTCCTACTAATGTTTAAAATACACACTTATGTAAGCAAATGATCTCCAATAGTTTGGAATTCTTAACTTTTTTTtttttttttaagattttatttgacagaga--gtgagagcacgcatgtgcacaagcagggtgcaaaggca
i canFam3.chr3              C 0 C 0
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1849001 356 +   3943991 I
e otoGar3.GL873530             670922 1286 -  36342412 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=800256.000000
s hg38.chr15_KI270850v1_alt    372839 122 +    430880 gagg----------------------------------------------------------------------------------------ttaacc----------------------------------ttttttgtatcatgaaccatttggcagtctgctaaaaccaat--aaaccttctaagaaaaatgtttcaaaacatataaaataGTAAtaatattgaaatagtaaat----------aaatgtcaa
s panTro5.chr15              63525920 122 +  83230942 gagg----------------------------------------------------------------------------------------ttaacc----------------------------------ttttttgtatcatgaaccatttggcagtctgctaacaccaat--aaaccttctaagaaaaatgtttcaaaacatataaaataGTAAtaatactgaaatagtaaat----------aaatatcaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80482995 122 +  99763055 gagg----------------------------------------------------------------------------------------ttaacc----------------------------------ttttttgtatcatgaaccatttggcagtctgctaacaccaat--aaaccttctaagaaaaatgtttcaaaacatataaaataGTAATAATACTGAAATAgtaaat----------aaatatcaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        83182 122 -   1709092 gagg----------------------------------------------------------------------------------------ttaacc----------------------------------ttttttgtatcatgaaccatttggcagtctgctaaaaccaat--aaaccttctaagaaaaatgtttcaaaacatataaaataGTAAtaatactgaaatagtaaat----------aaatgtcaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17242592 121 - 121039945 --GG----------------------------------------------------------------------------------------ttaacc----------------------------------ttttttgtattatgaaccatttggcagtctgctaaaaccaat-gaaaccttctaagaaacatgtttcaaaacatataaaataGTAAtaatactgaaatagtaaat----------aaatgtcaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60923295 124 + 169600520 gagg-------------------------------------------------------------------------------------ttcttaacc----------------------------------ttttttgtatcatgaaccgtttggcagtctgctaaaacctatggaaac---ctaagaaaaatgtttctaaacatacaaaataGTAAtaatattgaaatagtaaat----------aaatgtcaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108450035 124 - 171882078 gagg-------------------------------------------------------------------------------------ttcttaacc----------------------------------ttttttgtatcatgaaccgtttggcagtctgctaaaacctatggaaac---ctaagaaaaatgtttctaaacatacaaaataGTAAtaatattgaaatagtaaat----------aaatgtcaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        63443 124 -   2311642 gagg-------------------------------------------------------------------------------------ttcttaacc----------------------------------ttttttgtatcatgaaccgtttggcagtctgctaaaacctatggaaac---ctaagaaaaatgtttctaaacatacaaaataGTAAtaatattgaaatagtaaat----------aaatgtcaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        58962 124 -   1987038 gagg-------------------------------------------------------------------------------------ttcttaacc----------------------------------ttttttgtatcatgaaccgtttggcagtctgctaaaacctatggaaac---ctaagaaaaatgtttctaaacatacaaaataGTAAtaatattgaaatagtaaat----------aaatgtcaa
i cerAty1.NW_012002657v1    C 0 I 21
s chlSab2.chr29              21139588 124 -  24206276 gagg-------------------------------------------------------------------------------------ttcttaacc----------------------------------ttttttgtatcatgaaccatttggcagtctgctaaaacctatggaaac---ctaagaaaaatgtttctaaatatacaaaataGTAAtaatattgaaatagtaaat----------aaatgtcaa
i chlSab2.chr29             C 0 I 21
s manLeu1.NW_012106908v1        69928 124 -   1397330 gagg-------------------------------------------------------------------------------------ttcttaacc----------------------------------ttttttgtatcatgaaccatttggcagtctgctaaaacctatggaaac---ctaagaaaaatgtttctaaacatacaaaataGTAAtaatattgaaatagtaaac----------aaatgtcaa
i manLeu1.NW_012106908v1    C 0 I 21
s saiBol1.JH378108           50511504 117 +  54856640 gagg----------------------------------------------------------------------------------------ttaacct---------------------------------ttttttgtatcttgaaccatttggcggtctgctaaaacctacagaaacattctaagaaaaatgtttcaaaacatataaaatagtaataatattgaaat------------------aatgtcaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       654023 116 -   2910086 gagg----------------------------------------------------------------------------------------tttacc----------------------------------ttttttgtatcttgaaccatttggcagtctgctaaaacctacagaaacattctaagaaaaatgtttcaaaacatataaaatagtcataatattgaaat------------------aatgtcaa
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40680582 115 +  42888418 gagg----------------------------------------------------------------------------------------ttaacc----------------------------------ttttttgtgtcttgaaccatttggcagtctgctaaaacctacagaaacattctaagaaaaatgtttcaaaacatataaaataGT-GTAATATTGaaat------------------aatatcaa
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54444486 249 +  91889043 gagggagaagcagacttctcactgagcagggagcctgatgtggggcttgaccccaggaccttgagatcatgacctgatctgaaagcagacacttaactgtctgagccaccaagatgccccTGAAATTCTTAACTTTTTAAACCATGAACAATTTGGAAATCTCCTAAAGCCTAT--CAATG--TTGAGAATAATGTT---AAATATGTAAAATAATAgtaattttgaagtaatgaggagtatagacaacatttcaa
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81394547  23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1849001 356 +   3943991 I
e otoGar3.GL873530             670922 1286 -  36342412 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=63283.000000
s hg38.chr15_KI270850v1_alt    372961 17 +    430880 ggtatgtacaatgcctg
s panTro5.chr15              63526042 17 +  83230942 gatatgtacaatgcctg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80483117 17 +  99763055 gatatgtacaatgcctg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        83304 17 -   1709092 gatatgtacaatgcctg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17242713 17 - 121039945 gacatgtacagtgcctg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60923419 16 + 169600520 -atatgtacaagatgtg
i rheMac8.chr7              C 0 I 5
s macFas5.chr7              108450159 16 - 171882078 -atatgtacaagatgtg
i macFas5.chr7              C 0 I 5
s macNem1.NW_012011945v1        63567 16 -   2311642 -atatgtacaagatgtg
i macNem1.NW_012011945v1    C 0 I 5
s saiBol1.JH378108           50511621 17 +  54856640 gatatatacaatgactg
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       654139 17 -   2910086 gatatgtacaatgactg
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40680697 17 +  42888418 gatatgtacaatgactg
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54444735 15 +  91889043 aatatgtgcaatgac--
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81394547 23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1849001 356 +   3943991 I
e otoGar3.GL873530             670922 1286 -  36342412 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M
e manLeu1.NW_012106908v1        70052 21 -   1397330 I
e chlSab2.chr29              21139712 21 -  24206276 I
e cerAty1.NW_012002657v1        59086 21 -   1987038 I

a score=791865.000000
s hg38.chr15_KI270850v1_alt    372978  91 +    430880 taaaggaatca-atatgaattgtctgatcatcctattga-------------taccaaattattaggtcctgctaatattgtgacttgttgcctaaacttacagt
s panTro5.chr15              63526059  91 +  83230942 taaaggaatca-atatgaattgtctgatcatcctattga-------------taccaaattattaggtcctgctaatattgtgacttgttgcctaaacttacagt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80483134  91 +  99763055 taaaggaatca-atatgaattgtctgatcatcctattga-------------taccaaattattaggtcctgctaatattgtgacttgttgcctaaacttacagt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        83321  91 -   1709092 taaaggaatca-atatgaattgtctgatcatcctattga-------------taccaaattattaggtcctgctaatattgtgacttgttgcctaaacttacagt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17242730  91 - 121039945 taaaggaatga-atatgaattgtctgatcatcctattga-------------taccaaattattaggtcctgctaatattgtgacttgttgcctcaacttacagt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60923440  91 + 169600520 taaaggcatca-atatgaattgtctgatcatcctattga-------------taccaaattattaggtcctgctaatattgtgacttgttgcctaaacttacagt
i rheMac8.chr7              I 5 C 0
s macFas5.chr7              108450180  91 - 171882078 taaaggcatca-atatgaattgtctgatcatcctattga-------------taccaaattattaggtcctgctaatattgtgacttgttgcctaaacttacagt
i macFas5.chr7              I 5 C 0
s macNem1.NW_012011945v1        63588  91 -   2311642 taaaggcatca-atatgaattgtctgatcatcctattga-------------taccaaattattaggtcctgctaatattgtgacttgttgcctaaacttacagt
i macNem1.NW_012011945v1    I 5 C 0
s cerAty1.NW_012002657v1        59107  91 -   1987038 taaaggcatca-atatgaattttctgatcatcctattga-------------taccaaattattaggtcctgctaatattgtgacttgttgcctaaacttacagt
i cerAty1.NW_012002657v1    I 21 C 0
s chlSab2.chr29              21139733  91 -  24206276 taaaggcatca-atatgaattgtctgatcatcctattga-------------taccaaattattaggtcctgctaatattgtgacttgttgcctaaacttacagt
i chlSab2.chr29             I 21 C 0
s manLeu1.NW_012106908v1        70073  91 -   1397330 taaaggcatca-atatgaattttctgatcatcctattga-------------taccaaattattaggtcctgctaatattgtgacttgttgcctaaacttacagt
i manLeu1.NW_012106908v1    I 21 C 0
s saiBol1.JH378108           50511638  91 +  54856640 gaaaggaatca-atatgaattgtctgatcatcctatgga-------------taccaaattattaggtcctgctactattgtgatttgttgcctaaacttacagt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       654156  91 -   2910086 gaaaggaatca-atatgaattgtctgatcatcctatgga-------------taacaaattattaggtcttgctaatattgtgatttgttgcctaaacttacagc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40680714  91 +  42888418 taaaggaatca-atacaaattgtctgatcatcctatgga-------------taccaaattattaggtcctgctaatattgtgatttgttgcctaaacttacagt
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54444750 105 +  91889043 taaagaaatcagatataaagtgtctgaccatccaatggatgatgaagattattaccaaagaattaggccctgttactattgtgatttgttgccaacatttacaat
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81394547  23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1849001 356 +   3943991 I
e otoGar3.GL873530             670922 1286 -  36342412 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=72423.000000
s hg38.chr15_KI270850v1_alt    373069 10 +    430880 taaaagaaat
s panTro5.chr15              63526150 10 +  83230942 taaaagaaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80483225 10 +  99763055 taaaagaaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        83412 10 -   1709092 taaaaaaaat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17242821 10 - 121039945 taaaagaaac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60923531 10 + 169600520 taaaagaaat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108450271 10 - 171882078 taaaagaaat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        63679 10 -   2311642 taaaagaaat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        59198 10 -   1987038 tcaaagaaat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21139824 10 -  24206276 taaaagaaat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        70164 10 -   1397330 taaaagaaat
i manLeu1.NW_012106908v1    C 0 C 0
s saiBol1.JH378108           50511729 10 +  54856640 tgaaagaaat
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       654247 10 -   2910086 tgaaggaaat
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40680805 10 +  42888418 tgaaagaaat
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81394547 23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1849001 356 +   3943991 I
e canFam3.chr3               54444855  0 +  91889043 C
e otoGar3.GL873530             670922 1286 -  36342412 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=13200.000000
s hg38.chr15_KI270850v1_alt    373079 2 +    430880 gc
s panTro5.chr15              63526160 2 +  83230942 gc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80483235 2 +  99763055 gc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        83422 2 -   1709092 gc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17242831 2 - 121039945 gc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60923541 2 + 169600520 gc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108450281 2 - 171882078 gc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        63689 2 -   2311642 gc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        59208 2 -   1987038 gc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21139834 2 -  24206276 gc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        70174 2 -   1397330 gc
i manLeu1.NW_012106908v1    C 0 C 0
s cebCap1.NW_016107610v1       654257 2 -   2910086 gc
i cebCap1.NW_016107610v1    C 0 I 950
e aotNan1.NW_018505940v1     40680815 0 +  42888418 C
e mm10.chr7                  81394547 23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1849001 356 +   3943991 I
e canFam3.chr3               54444855 0 +  91889043 C
e otoGar3.GL873530             670922 1286 -  36342412 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M
e saiBol1.JH378108           50511739 0 +  54856640 C

a score=1276845.000000
s hg38.chr15_KI270850v1_alt    373081 295 +    430880 agctgggcttggtggctcacacctgtaatcccagcactttgggaggtcgaggcaggtggatcacaaggtcaggagacagaaaccatcctggctaacaatgtg-aaacccagtctctattaaaaatacaaaaaattagccaggcatggcggtgggcgcctgcagtcccagctactcaggaagctgaggcaggagaatggcatgaacccggcaggcagagcttgc-agtgagtggagatcgcaccact-gcactccagcctgggtgacacagcgagactccgtctc-------aaaaaaaaaaaaaa
s panTro5.chr15              63526162 296 +  83230942 agctgggcttggtggctcacacctgtaatcccagcactttgggaggtcgaggcaggcggatcacaaggtcaggagatagagaccatcctggctaacaatgtg-aaacccagtctctattaaaaatacaaaaaattagccaggcatggcggtgggcgcctgcagtcccagctactcaggaagctgaggcaggagaatggcgtgaacccggcaggcagagcttgc-agtgagtggagatcgcaccacttgcactccagcctgggtgacacagcgagactccgtctc-------aaaaaaaaaaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80483237 296 +  99763055 Agctgggcttggtggctcacacctgtaatcccagcactttgggaggtcgaggcaggcggatcacaaggtcaggagatagagaccatcctggctaacaatgtg-aaacccagtctctattaaaaatacaaaaaattagccaggcatggcggtgggcgcctgcagtcccagctactcaggaagctgaggcaggagaatggcgtgaacccggcaggcagagcttgc-agtgagtggagatcgcaccacttgcactccagcctgggtgacacagcgagactccgtctc-------aaaaaaaaaaaaaa
i panPan2.chr15             C 0 M 20
s gorGor5.CYUI01015556v1        83424 287 -   1709092 ggctgggcttggtggctcacacctgtaatcccagcactttgggaggtcgaggcaggcggatcacaaggtcaggagatagagaccatcctggctaacaatgtgaaaacccagtctctattaaaaatacaaaaaattagccaggcatggtggtgggcgcctgcagtcccagctactcaggaagctgaggcaggagaatggcgtgaacccggcaggcagagcttgcaagtgagtggagattgcaccact-gcactccagcctgggtgacacagcgagactccgtctc-------aaaa----------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17242833 295 - 121039945 agccaggcgcggtggctcacgtctgtaatcccagcactttgggaggtcaaggcaggcagatcacaaggtcaagagatcgagaccatcctggctaacaaggtg-aaacccagtctctactaaaaatacaaaaaattagccgggcatggtggtgggcgcctgcagtcccagctactcaggaggctgaggtaggagaatggcgtgaacccggcaggcagagcttgc-agtgagtggagatcacaccact-gcactctagcctgggtgacacagcgagactccatctc-------aaaaaaaaaaaaaa
i nomLeu3.chr6              C 0 I 1
s rheMac8.chr7               60923543 297 + 169600520 ggccgggcacggtggctcacgcctgtaatctcagaattttgggaggccaaggcgggcaaatcacgaggtcaggagatggagaacatcctggctaacacggtg-aaacccagtctctactaaaaatacaaaaaattagccgggcatagtggtgggcgcttgtagtaccagctactcaggaggctgaggcagaagaatggcatgaacctggcaggcagagcttgc-agtgagtggagatcacaccact-gcactccagcctgggcgacagaatgagactccgtcac--aaaaaaaaaaaaaaaa---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108450283 299 - 171882078 ggccgggcacggtggttcacgcctgtaatctcagaattttgggaggccaaggcgggcaaatcacgaggtcaggagatggagaacatcctggctaacacggtg-aaacccagtctctactaaaaatacaaaaaattagccgcgcatagtggtgggcgcttgtagtaccagctactcaggaggctgaggcagaagaatggcatgaacctggcaggcagagcttgc-agtgagtggagatcacaccact-gcactccagcctgggcgacagaatgagactctgtcACAGaaaaaaaaaaaaaaaa---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        63691 289 -   2311642 ggccgggcacggtggctcacgcctgtaatctcagaattttgggaggccaaggcgggcaaatcacgaggtcaggagctggagaacatcctggctaacacggtg-aaacccagtctctactaaaaatacaaaaaattagccgggcatagtggtgggcgcttgtagtaccagctactcaggaggctgaggcagaagaatggcatgaacctggcaggcagagcttgc-agtgagtggagatcacaccact-gcactccagcctgggcgacagaatgagactccgtcac----------aaaaaaaa---
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        59210 288 -   1987038 ggccgggcacggtggctcacgcctgtaatctcagaattttggggggccacggcgggcaaatcacgaggtcaggagatggagaacatcctggctaacacggtg-aaacccagtctctactaaaaatacaaaaaattagccgggcatagtggtgggcgcttgtagtaccagctactcaggaggctgaggcagaagaatggcatgaacctggcaggcagagcttgc-agtgagtggagatcacaccact-gcactccagcctgggcgacagaatgagactccgttac-----------caaaaaa---
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21139836 292 -  24206276 ggccgggcacggtggctcacgcctgtaatctcagaattttgggaggccaaggcgggcaaatcacgaggtcaggagatggagaacatcctggctaacatggtg-aaacccagtctctactaaaaatacaaaaaattagccgggcacggtggcgggcgcttgtagtaccagctactcaggaggctgaggcagaagaatggcatgaacctggcaggcagagcttgc-agtgagtggagatcacaccact-gcactccagcctgggcgacagaatgagactccatcac-------caaaaaaaaaa---
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        70176 288 -   1397330 ggccaggcacggtggctcacgcctgtaatctcagaattttgggaggccacggcaggcaaatcacgaggtcaggagatggagaacatcctggctaacacggtg-aaacccagtctctactaaaaatacaaaaaattagccgggcatagtggtgggcgcttgtagtatcagctactcaggaggctgaggcagaagaatggcatgaacctggcaggcagagcttgc-agtgagtggagatcacaccact-gcactccagcctgggcgacagaatgagactccattac-------c----aaaaaa---
i manLeu1.NW_012106908v1    C 0 C 0
e aotNan1.NW_018505940v1     40680815   0 +  42888418 C
e mm10.chr7                  81394547  23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1849001 356 +   3943991 I
e canFam3.chr3               54444855   0 +  91889043 C
e cebCap1.NW_016107610v1       654259 950 -   2910086 I
e otoGar3.GL873530             670922 1286 -  36342412 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M
e saiBol1.JH378108           50511739   0 +  54856640 C

a score=4095.000000
s hg38.chr15_KI270850v1_alt    373376 1 +    430880 a
s panTro5.chr15              63526458 1 +  83230942 a
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        83711 1 -   1709092 a
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17243129 1 - 121039945 a
i nomLeu3.chr6              I 1 C 0
s rheMac8.chr7               60923840 1 + 169600520 a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108450582 1 - 171882078 a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        63980 1 -   2311642 a
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        59498 1 -   1987038 a
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21140128 1 -  24206276 a
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        70464 1 -   1397330 a
i manLeu1.NW_012106908v1    C 0 C 0
e aotNan1.NW_018505940v1     40680815 0 +  42888418 C
e mm10.chr7                  81394547 23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1849001 356 +   3943991 I
e canFam3.chr3               54444855 0 +  91889043 C
e cebCap1.NW_016107610v1       654259 950 -   2910086 I
e otoGar3.GL873530             670922 1286 -  36342412 I
e panPan2.chr15              80483533 20 +  99763055 M
e colAng1.NW_012117110v1        76661 3842 -   1784207 M
e saiBol1.JH378108           50511739 0 +  54856640 C

a score=35660.000000
s hg38.chr15_KI270850v1_alt    373377 10 +    430880 aaaaaaaa-aa-
s panTro5.chr15              63526459 11 +  83230942 aaaaaaaacaa-
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        83712 10 -   1709092 aaaaaaaa-aa-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17243130 10 - 121039945 aaaaaaaa-aa-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60923841 10 + 169600520 aaaaaaaa-aa-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108450583 10 - 171882078 aaaaaaaa-aa-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        63981 10 -   2311642 aaaaaaaa-aa-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        59499 10 -   1987038 aaaaaaaa-aa-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21140129 10 -  24206276 aaaaaaaa-aa-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        70465 10 -   1397330 aaaaaaaa-aa-
i manLeu1.NW_012106908v1    C 0 C 0
s canFam3.chr3               54444855 10 +  91889043 -agataga-aac
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018505940v1     40680815  0 +  42888418 C
e mm10.chr7                  81394547 23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1849001 356 +   3943991 I
e cebCap1.NW_016107610v1       654259 950 -   2910086 I
e otoGar3.GL873530             670922 1286 -  36342412 I
e panPan2.chr15              80483533 20 +  99763055 M
e colAng1.NW_012117110v1        76661 3842 -   1784207 M
e saiBol1.JH378108           50511739  0 +  54856640 C

a score=687266.000000
s hg38.chr15_KI270850v1_alt    373387 107 +    430880 gctacgtttcagttaaacatcactgaacgtgaagatacaa--gtttttacctgtctaaattattggaccccctgaattctatccatgtacccaggttaagaatcccATA
s panTro5.chr15              63526470 107 +  83230942 cctacgtttcagttaaacatcactgaacatgaagatacaa--gtttttacctgtctaaattattggaccccctgaattctatccatgtacccaggttaagaatcccATA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        83722 107 -   1709092 gctacgtttcagttaaacatcactgaacatgaagatacaa--gtgtttacctgtctaaattattggaccccctgaattctatccatgtacccaggttaagaatcccATA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17243140 107 - 121039945 gctacgtttcagttaaacatcactgaacataaagatacaa--gtttttacctgtctaaattattggaccccctgaattctatccatgtacccaggttaagaattccATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60923851 107 + 169600520 gctacgtttcagttaaacatcactgaatataaagatacaa--gtttttacctgtctaaattattggaccccctgaattctatccatgtaaccaggttaagaatcccATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108450593 107 - 171882078 gctacgtttcagttaaacatcactgaatataaagatacaa--gtttttacctgtctaaattattggaccccctgaattctatccatgtaaccaggttaagaatcccATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        63991 107 -   2311642 gctacgtttcagttaaacatcactgaatataaagatacaa--gtttttacctgtctaaattattggaccccctgaattctatccatgtaaccaggttaagaatcccATA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        59509 107 -   1987038 gctacgtttcagttaaacatcactgaatataaagatacaa--gtttttacctgtctaaattattggaccccctgaattctatccatgtaaccaggttaagaatcccATA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21140139 107 -  24206276 gctacgtttcagttaaacatcactgaatataaagatacaa--gtttttacctgtctaaattattggaccccctgaattctatccatgtaaccaggttaagaatcccATA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        70475 107 -   1397330 gctacgtttcagttaaacatcactgaatataaagatacaa--gtttttacctgtctaaattattggaccccctgaattctatccatgtaaccaggttaagaatcccATA
i manLeu1.NW_012106908v1    C 0 C 0
s saiBol1.JH378108           50511739 107 +  54856640 gctatgtttcagctaaacatcactgaatataaaaatacaa--gtttttacctgtctaaattattggaccccccgaattctatccatgtatccaggttaagaatcccACA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40680815 107 +  42888418 gctatgtttcagttaaacatcactgaacataaagatacaa--gtttttacctgtctaaattattggaccccctgaattctatccatgtatctaggttaagaatcccACA
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54444865 109 +  91889043 actacatttcaggtaaacattggttaaagataaaataaagatgtattcacctgtccaaattcctagactctctgaattttctccatgaatctggatttagaatcccATA
i canFam3.chr3              C 0 I 213
e mm10.chr7                  81394547  23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1849001 356 +   3943991 I
e cebCap1.NW_016107610v1       654259 950 -   2910086 I
e otoGar3.GL873530             670922 1286 -  36342412 I
e panPan2.chr15              80483533  20 +  99763055 M
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=1763595.000000
s hg38.chr15_KI270850v1_alt    373494 278 +    430880 ATGCAggctgggtgcggtggctcacacctgtaatcccagcactttggga-ggcaaaggtaggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaggcgtggtggtgggcacctgtaatctcagctactctagaggctgaggcaggagaatcgcttgaacctgggaggaggaggttacagtgagccaagatcacgccactgcactccagcctgggc------aagacagagcga
s panTro5.chr15              63526577 278 +  83230942 ATGCAggctgggtgcggtggctcacacctgtaatcccaacactttggga-ggcaaaggtaggtggatcacttgaggtcagcagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagtcaggcgtggtggtggacacctgtaatctcagctactctagaggctgaggcaggagaatcgcttgaacctgggaggaggaggttacagtgagccaagatcacgccactgcactccaggctgggc------aagacagagcga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80483553 279 +  99763055 ATGCAggctgggtgcggtggctcacacctgtaatcccagcactttgggagggcaaaggtaggtggatcacttgaggtcagcagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagtcaggcgtggtggtgggcacctgtaatctcagctactctagaggctgaggcaggagaatcgcttgaacctgggaggaggaggttacagtgagccaagatcacgccactgcactccaggctgggc------aagacagagcga
i panPan2.chr15             M 20 C 0
s gorGor5.CYUI01015556v1        83829 278 -   1709092 ATACAggctgggtgcggtggctcacacctgtaatcccagcactttggga-ggcaaaggtaggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaggcgtggtggtgggcgcctgtaatctcagctactctagaggctgaggcaggagaatcgcttgaacctgggagaaggaggttacagtgagccaagatcacgccactgcactccagcctgggc------aagaaagagcga
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17243247 278 - 121039945 ATGCAggctgggtgcagtggctcatacctgtaatcccagcacttcggga-ggcaaaggtaggtggatcactcgaggtcaggagctcaagatcagcctggccaatatggtgaaaccccatctctactaaaaatacaaaaattagccaggcatggtggtgggcacctgtaatcccagctactctagaggctgaggcaggagaatcgcttgaacctgggagaaggaggttacagtgagccaaaatcatgccactgcactccagcctgggc------aagccagagcga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60923958 278 + 169600520 ACACAggccgggtgcagtggctcatacctttaatcccagcactttggga-ggcaaaggtgggtggatcacgtgaggtcaggagttcaagacctgcctggccaacatggtgaaatcccatctctactaaaaatacaaaaattagccaggcgtggtggtgggcacctgtaatctcagctactctggaggctgaggcagaagaatcacttgaacctgggaggcggaggtaacagtgagccaagatcacgccactgcacttcatcctgggc------aaaacagagcaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108450700 278 - 171882078 ACACAggccgggtgcagtggctcatacctttaatcccagcactttggga-ggcaaaggtgggtggatcacgtgaggtcacgagttcaagacctgcctggccaacatggtgaaatcccatctctactaaaaatacaaaaattagccaggcgtggtggtgggcacctgtaatctcagctactctggaggctgaggcaggagaatcacttgaacctgggaggcggaggtaacagtgagccaagatcacgccactgcacttcagcctgggc------aaaacagagcaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        64098 278 -   2311642 ACACAggccgggtgcagtggctcatacctttaatcccagcactttggga-ggcaaaggtgggtggatcacgtgaggtcaggagttcaagacctgcctggccaacatggtgaaatcccatctctactaaaaatacaaaaattagccaggcgtggtggtgggcacctgtaatctcagctactctggaggctgaggcaggagaatcacttgaacctgggaggcggaggtaacagtgagccaagatcacgccactgcacttcagcctgggc------aaaacagagcaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        59616 278 -   1987038 ACACAggccgggtgcagtagctcatacctttaatcccagcactttggga-ggcaaaggtgggtggatcacgtgaggtcaggagttcaagacctgcctggccaacatggtgaaatcccatctctactaaaaatacaaaaattagccaggcgtggtggtgggcacctgtaatctcagctactctggaggctgaggcaggagaatcacttgaacctgggaggcggaggtaacagtgagccaagatcacgccactgcactccagcctgggc------aaaacagagcaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21140246 278 -  24206276 ACACAggccgggtgcagtggctcatacctttaatcccagcactttggga-ggcaaaggtgggtggatcacgtgaggtcaggagttcaagacctgcctggccaacatggtgaaatcccatctctactaaaaatacaaaaattagccaggcgtggtagtgggcacctgtaatctcagctactctggaggctgaggcaggagaatcacttgaacctgggaggcagaggtaacagtgagccaagatcacgccactgcactccagtctaggc------aaaacagagcaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        70582 278 -   1397330 ACACAggccgggtgcagtggctcatacctttaatcccagcactttggga-ggcaaaggtgggtggatcacgtgaggtcaggagttcaagacctgcctggccaacatggtgaaatcccatctctactaaaaatacaaaaattagccaggcgtggtggtgggcacctgtaatctcagctactctggaggctgaggcaggagaatcacttgaacctgggaggcggaggtaacagtgagccaagatcacgccactgcactccagcctgggc------aaaacagagcaa
i manLeu1.NW_012106908v1    C 0 C 0
s saiBol1.JH378108           50511846 273 +  54856640 GTGCAggccaggcgcgatggctcatgcctgtaataccagtactttggga-ggcag-ggagggcaaatcatctgaggtcaagagcttgagaccagcctggccaacatagtgaaaccccgtctctactaaaaatgcaaaaattagtcaggggtgatggcggacacctgtaatcccacctactctggaggctgaggcaggagaattgtttgaccctgggaggcagaggttgcagtgagccaagatggtgccacggcattccagcctgggt----------gagagaga
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40680922 284 +  42888418 GTGCAggccaggcatgatggctcatgcctgtaatcccagcactttggga-ggcagaggagggcaaatcacctgaggtcaagagtttgagaccagcctggccaacatggtgaaacactgtctctactaaaaatgcaaaaatcagtcaggggtggtggcggacacctgtaatcccacctactttggaggctgaggcaggagaattgcttgaccctgggaggcagaggttgcagtgagccaagacggtgccactgcactccagccggggtgagagagagagagagaga
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81394547  23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1849001 356 +   3943991 I
e canFam3.chr3               54444974 213 +  91889043 I
e cebCap1.NW_016107610v1       654259 950 -   2910086 I
e otoGar3.GL873530             670922 1286 -  36342412 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=50386.000000
s hg38.chr15_KI270850v1_alt    373772 23 +    430880 gactccatcaaaaaaa-------------aaaaaaa
s panTro5.chr15              63526855 23 +  83230942 gactacatcaaaaaaa-------------aaaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80483832 23 +  99763055 gactacatcaaaaaaa-------------aaaaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        84107 23 -   1709092 gactccatcaaaaaaa-------------aaaaaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17243525 23 - 121039945 gactctgtcaaaaaaa-------------aaaaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60924236 17 + 169600520 gactccattc-------------------aaaaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108450978 17 - 171882078 gactccattc-------------------aaaaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        64376 18 -   2311642 gactccattca------------------aaaaaaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        59894 15 -   1987038 gactccatta---------------------aaaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21140524 21 -  24206276 gactccataaa--aaa-------------aaaaaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        70860 15 -   1397330 gactccat---------------------taaaaaa
i manLeu1.NW_012106908v1    C 0 C 0
s saiBol1.JH378108           50512119 28 +  54856640 gattctatctcaaaaaaaaaa--------aaaaaaa
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40681206 36 +  42888418 gactccatctcaaaaaaaaaaaataaaataaaataa
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54445187 19 +  91889043 gtctctctcatg-----------------aagaagt
i canFam3.chr3              I 213 C 0
e mm10.chr7                  81394547 23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e dasNov3.JH570731            1849001 356 +   3943991 I
e cebCap1.NW_016107610v1       654259 950 -   2910086 I
e otoGar3.GL873530             670922 1286 -  36342412 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=18510.000000
s hg38.chr15_KI270850v1_alt    373795  8 +    430880 -aaaaa----------------TCC
s panTro5.chr15              63526878 24 +  83230942 -aaaaaaaaaaaaaaaaaaaaaTCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80483855 15 +  99763055 -aaaaa---------aaaaTACTCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        84130  7 -   1709092 -aaaa-----------------TCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17243548  7 - 121039945 -aaaa-----------------TCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60924253  7 + 169600520 -aaaa-----------------TCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108450995  7 - 171882078 -aaaa-----------------TCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        64394  7 -   2311642 -aaaa-----------------TCC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        59909  7 -   1987038 -aaaa-----------------TCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21140545  7 -  24206276 -aaaa-----------------TCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        70875  7 -   1397330 -aaaa-----------------TCC
i manLeu1.NW_012106908v1    C 0 C 0
s saiBol1.JH378108           50512147  7 +  54856640 -aaaa-----------------TCC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40681242  7 +  42888418 -aaaa-----------------TAC
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54445206  4 +  91889043 -aaaa--------------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1849357  8 +   3943991 aagag-----------------ttc
i dasNov3.JH570731          I 356 C 0
e mm10.chr7                  81394547 23 + 145441459 I
e calJac3.chr6               22280072 200 + 158406734 I
e cebCap1.NW_016107610v1       654259 950 -   2910086 I
e otoGar3.GL873530             670922 1286 -  36342412 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=664415.000000
s hg38.chr15_KI270850v1_alt    373803  98 +    430880 CATAATGCATCTATCTACACAGTAAAATGCTATGTAGCCTTGAA--AAGGGATATAAAAAATTAACACA--AAGATA------AAAGAGGCAA-----A--------TAGTGTGTTCAaaa
s panTro5.chr15              63526902 100 +  83230942 CATAATGCATCTATCTACACAGTAAAATGCTATGTAGCCTTGAA--AAGGGATATAAAAAATTAACACAGAAAGATA------AAAGAGGCAA-----A--------TAGTGTGTTCAaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80483870 100 +  99763055 CATAATGCATCTATCTACACAGTAAAATGCTATGTAGCCTTGAA--AAGGGATATAAAAAATTAACACAGAAAGATA------AAAGAGGCAA-----A--------TAGTGTGTTCAaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        84137 100 -   1709092 CATAATGCATCTATCTACACAGTAAAATGCTATGTAGCCTTGAA--AGGAGATATAAAAAATTAACATAGAAAGATA------AAAGAGGCAA-----A--------TAGTGTGTTCAaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17243555 106 - 121039945 CATAATAAATCTATCTACACAGTAAAATGCTATGTAGCCTTGAA--AAGAGATATAAAAAATTAACACAGAAAGATAAAAGATAAAGAGGCAA-----A--------TAGTGTGTTCAaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60924260 106 + 169600520 CATAATGCATCTATCTACACAATAAAATGCTACGTAGCCTTGAA--AAGAGATATAAAAAATAAACACAGAAAGATAAAAGATAAAGAGGCAA-----A--------CAGTGTGTTCAAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108451002 106 - 171882078 CATAATGCATCTATCTACACAATAAAATGCTACGTAGCCTTgaa--aagagatatgaaaaataaacacagaaagataaaagataaaGAGGCAA-----A--------CAGTGTGTTCAAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        64401 106 -   2311642 CATAATGCATCTATCTACACAATAAAACGCTACGTAGCCTTGAA--AAGAGATATAAAAAATAAACACAGAAAGATAAAAGATAAAGAGGCAA-----A--------CAGTGTGTTCAAAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        59916 106 -   1987038 CATAATGCATCTAACTACACAATAAAATGCTACGTAGCCTTGAA--AAGAGATATAAAAAATAAACACAGAAAGATAAAAGATAAAGAGGCAA-----A--------CAGTGTGTTCAAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21140552 106 -  24206276 CATAATGCATCTATCTACACAATAAAATGCTACGTAGCCTTGAA--AAGAGATATAAAAAATAAACACAGAAAGATAAAAGATAAAGAGGCAA-----A--------CAGTGTGTTCAAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        70882 106 -   1397330 CATAATGCATCTATCTACACAATAAAATGCTACGTAGCCTTGAA--AAGAGATATAAAAAATAAACACAGAAAGATAAAAGATAAAGAGGCAA-----A--------CAGTGTGTTCAAAA
i manLeu1.NW_012106908v1    C 0 C 0
s saiBol1.JH378108           50512154  97 +  54856640 CATAATGCATCTATCTACACAGTAAAGTGCTACGTAACCTTGAA--AAAAGATAT-AAAAATTAACACA----GATAAAAGATAAACAGG-----------------TAGTGTGTTCAAAA
i saiBol1.JH378108          C 0 I 1
s aotNan1.NW_018505940v1     40681249  95 +  42888418 CATAATGCATCTATCTACACAGTAA------ATGTACCCTTGAA--AAAAGATAG-AAAAATTAACACA----GATAAAAGATAAAGAGGTAA-----A--------TAGTGTGTTCAAAA
i aotNan1.NW_018505940v1    C 0 I 19
s mm10.chr7                  81394570 101 + 145441459 CATAATGCTTCTATTTACATAGCAGAATGTTATACAAACCtata--aa---atat-aaaaattaataaGAGAAAAAGGAAGCGAAATGGGGAA-----T--------TAACATTCTGAAA-
i mm10.chr7                 I 23 C 0
s canFam3.chr3               54445210  75 +  91889043 -----------tctttacaaaaaaaaaGTCAATG----------------ATTATAAAA--------------GATAAAAGAGAAAGAAGCAA-----ATCATCATGTTGTGTGTTCACAA
i canFam3.chr3              C 0 I 11
s dasNov3.JH570731            1849365 112 +   3943991 cATAATTCAGCTTTGTATACAGTAAAATAACAAGCAGCCTTGCATTATGAATAATACATGAATGACACAGGAAGTTTAAAAA-AAAGAGGTAAGTTATA--------TAGTATGTTCAAAA
i dasNov3.JH570731          C 0 I 11
e calJac3.chr6               22280072 200 + 158406734 I
e cebCap1.NW_016107610v1       654259 950 -   2910086 I
e otoGar3.GL873530             670922 1286 -  36342412 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=85926.000000
s hg38.chr15_KI270850v1_alt    373901 16 +    430880 -tatttaatatacacgt
s panTro5.chr15              63527002 16 +  83230942 -tatttaatatacacgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80483970 16 +  99763055 -tatttaatatacacgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        84237 16 -   1709092 -tatttaatatacacgt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17243661 16 - 121039945 -tatttaatatacacgt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60924366 16 + 169600520 -GAGTTAATATACACGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108451108 16 - 171882078 -GAGTTAATATACACGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        64507 16 -   2311642 -GAGTTAATATACATGT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        60022 16 -   1987038 -GAGTTAATATACGTGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21140658 16 -  24206276 -GAGTTAATATACACGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        70988 16 -   1397330 -GAGTTAATATACACGT
i manLeu1.NW_012106908v1    C 0 C 0
s saiBol1.JH378108           50512252 16 +  54856640 -GACTGATtaaatacat
i saiBol1.JH378108          I 1 I 2
s mm10.chr7                  81394671 16 + 145441459 -GACTTCATGTAGATGA
i mm10.chr7                 C 0 I 7
s canFam3.chr3               54445296 16 +  91889043 -TAATAAatatatatgt
i canFam3.chr3              I 11 C 0
s dasNov3.JH570731            1849488 17 +   3943991 TACTTTAataaatatat
i dasNov3.JH570731          I 11 C 0
e aotNan1.NW_018505940v1     40681344 19 +  42888418 I
e calJac3.chr6               22280072 200 + 158406734 I
e cebCap1.NW_016107610v1       654259 950 -   2910086 I
e otoGar3.GL873530             670922 1286 -  36342412 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=406110.000000
s hg38.chr15_KI270850v1_alt    373917  97 +    430880 ttg----------aaa------aa-aaaaactggagagatacaccaaaatgttaacaatagttatttctcagtagtaagatgacataa-------------------------------------------tttttttttcctaattt--------------gct--------------------------tttttt
s panTro5.chr15              63527018  88 +  83230942 ttg----------aaa------aa-aaaaactggagagatacaccaaaatgttaacaatagttatttctcggtagtaagatgacataa-------------------------------------------tttttttttcctg-------------------------------------------------tttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80483986  83 +  99763055 ttg-----------aa------aa-aaaaactggagagatacaccaaaatgttaacaatagttatttctcggtagtaagatgacataa-------------------------------------------tttttttttcctg-----------------------------------------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        84253  98 -   1709092 ttg-----------aa------aa-aaaaactggagagatacaccaaaatgttaacaatagttatttctcagtagtaagatgacataa--------------------------------------------ttttttttcctaattt--------------gtttt-----------------------ctttttt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17243677 110 - 121039945 ttg--------aaaaa------aa-aaaaactggagagatacaccaaaatgttaacaatagttatttctgggtagtaagatgacgtaa--------------------------------------------ttttttttcctaattt--------------gtctgttttcttc--------------atttattt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60924382 120 + 169600520 TTGGGAAAAAAAAaaa------aa-aaaaactggagagatacaccaaaatgttaacaatagttatttctgggtagtaagatgacgtgc------------------------------------------ttttttttcccctaattt--------------gtctgttttcttc--------------ttcttttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108451124 120 - 171882078 TTGGGAAAAAAAAaaa------aa-aaaaactggagagatacaccaaaatgttaacaatagttatttctgggtagtaagatgacgtga------------------------------------------ttttttttcccctaattt--------------gtctgttttcttc--------------tttttttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        64523 134 -   2311642 TT-GGAAAAAAAAaaa------aa-aaaaactggagagatacaccaaaatgttaacaatagttatttctgggtagtaagatgacgtga-----------------------------------------tttttttttcccctaattt--------------gtctgttttctTCttcttctttttttttttttttt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        60038 119 -   1987038 TTGGaaaaaaaaaaaaaaaaaCaa-aaaaactggagagatacaccaaaatgttaacaatagttatttctgggtagtaagatgacgtga-------------------------------------------tttttttcccctaattt--------------gtctgttttcttc--------------------tt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21140674 161 -  24206276 TTGGAAAAAAAAAaaa------aa-aaaaactggagagatacaccaaaattttaacaatagttatttctgggtagtaagatgacgtgattttttttttcctAATTTGTCTAGGTAGTAAGATGACGTGAttttttttttccctaattt--------------gtctgttttct---------------ttttttttt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        71004 119 -   1397330 TTGG-AAAAAAAAaaa------aa-aaaaactggagagatacaccaaaatgttaacaatagttatttctgggtagtaagatgacatga-------------------------------------------tttttttcccctaattt--------------gtctgttttcttc-------------ttttttttt
i manLeu1.NW_012106908v1    C 0 C 0
s saiBol1.JH378108           50512270  89 +  54856640 -------------------ttgaacaaaaactggagagatatgccaaaatgttaacaatagtcacttctgggtagtaagatgacacga-------------------------------------------ttttt-ccccccaattt--------------gtct-------------------------------
i saiBol1.JH378108          I 2 C 0
s aotNan1.NW_018505940v1     40681363  91 +  42888418 -------------------ttgaa-aaaaactggatagatatgccaaaatgttaacgatagttacttctgggtagtaagatgacgtga-------------------------------------------tttttCCCCCCCAATTT--------------GTCTGC-----------------------------
i aotNan1.NW_018505940v1    I 19 C 0
s mm10.chr7                  81394694  90 + 145441459 ---------ATGTTAG------AG-AGATACTGG-GAGATTGATCAAAATGTCTGTAATAGTTAT---------GTACAATG-------------------------------------------------------TCTCTCAATTTTGGGGGGGAGGGGAGTCTATTTT--------------------------
i mm10.chr7                 I 7 C 0
s canFam3.chr3               54445312  81 +  91889043 -------------tag------aa-aaatactgg----gtatgctaaaatgtt---aatggttatccctgagtactgggattacacag----------------------------------------gattattttttgtctgtttt-------------------------------------------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1849505  83 +   3943991 ----------gttaga------aa-aataactgg------------aaatgttaaaagtagttacctccagatagtgggattacatga-----------------------------------------ccttttttacctttaattt--------------tccat------------------------------
i dasNov3.JH570731          C 0 C 0
e calJac3.chr6               22280072 200 + 158406734 I
e cebCap1.NW_016107610v1       654259 950 -   2910086 I
e otoGar3.GL873530             670922 1286 -  36342412 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=316081.000000
s hg38.chr15_KI270850v1_alt    374014 43 +    430880 tttttt------tttttttacagtgaacacat---tgtaacaag--aaaaaaaa
s panTro5.chr15              63527106 43 +  83230942 tttttt------tttttttacagtgaacacat---tgtaacaag--aaaaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80484069 40 +  99763055 ---ttt------tttttttaCAGTGAACACAT---TGTAACAAG--AAAAAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        84351 44 -   1709092 tttttt------tttttttacagtgaacaCAT---TGTAACAAG-AAAAAAAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17243787 44 - 121039945 atttat------ttattttacagtgaacatat---tgtaacaag-aaaaaaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60924502 44 + 169600520 tttttt------tttttttacagtgaacatac---tgtaacaag-aaaaaaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108451244 44 - 171882078 tttttt------tttttttacagtgaacatac---tgtaacaag-aaaaaaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        64657 45 -   2311642 tttttt------tttttttACAGTGAACATAC---TGTAACAAGAAAAAAAAAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        60157 44 -   1987038 tttttt------tttttttacagtgaacatac---tgtaacaag-aaaaaaaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21140835 43 -  24206276 tttttt------tttttttACAGTGAACATAC---TGCAACAAG--AAAAAAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        71123 44 -   1397330 tttttt------tttttttacagtgaacatac---tgtaacaag-aaaaaaaaa
i manLeu1.NW_012106908v1    C 0 C 0
s saiBol1.JH378108           50512359 43 +  54856640 tttttt------tttTTTAACAGAGAACATAT---TGTAACAAG-AAAAAAAA-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       655209 43 -   2910086 TTTTTT------TTTTTTTACAGTGAACATAT---TGTAACAAG-AAAAAAAA-
i cebCap1.NW_016107610v1    I 950 C 0
s aotNan1.NW_018505940v1     40681454 42 +  42888418 TTTCTA------CCTTTTTAAAGTGAACATAT---TGTAACAAG-AAAAAAA--
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81394784 39 + 145441459 CTACAA------ACCTTTTATAACAAGCA--------TTACTAG-AAGAAAAAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54445393 42 +  91889043 cttCAA------ATGTTTTACCATAAACACAT---TGAAACAAG-AAAAACA--
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1849588 52 +   3943991 tttcttcaaaaatttttttatagtgaatgtattactgtgacaag-gaaaaaaa-
i dasNov3.JH570731          C 0 C 0
e calJac3.chr6               22280072 200 + 158406734 I
e otoGar3.GL873530             670922 1286 -  36342412 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=481401.000000
s hg38.chr15_KI270850v1_alt    374057 51 +    430880 TGCAAGCTATTA------------------AACTGGGTAAGGT-----GAC--------AACATCCCCTAAATAAA---CTTGAG------
s panTro5.chr15              63527149 51 +  83230942 TGCAAGCTATTA------------------AACTGGGTAAGGT-----GAC--------AACATCCCCTAAATAAA---CTTGAG------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80484109 51 +  99763055 TGCAAGCTATTA------------------AACTGGGTAAGGT-----GAC--------AACATCCCCTAAATAAA---CTTGAG------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        84395 51 -   1709092 TGCAAGCTATTA------------------AACTGGGTAAGGT-----GAC--------AACATCCCCTAAATAAA---CTTGAG------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17243831 49 - 121039945 TGCAAGCTATTA------------------AGCTGGGTAAGGT-----GAC--------AACATCCCCTAAATAAA---C--GAG------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60924546 53 + 169600520 TGCAAGCTATTA------------------AACTGGGTAAGGT-----GAC------TTAACATCCCCTAAATAAA---CTTGAG------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108451288 53 - 171882078 TGCAAGCTATTA------------------AACTGGGTAAGGT-----GAC------TTAACATCCCCTAAATAAA---CTTGAG------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        64702 53 -   2311642 TGCAAGCTATTA------------------AACTGGGTAAGGT-----GAC------TTAACATCCCCTAAATAAA---CTTGAG------
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        60201 53 -   1987038 TGCAAGGTATTA------------------AACTGGGTAAGGT-----GAC------TTAACATCCCCTAAATAAA---CTTGAG------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21140878 53 -  24206276 TGCAAGCTATTA------------------AACTGGGTAAGGT-----GAC------TTAACATCCCCTAAATAAA---CTTGAG------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        71167 53 -   1397330 TGCAAGGTATTA------------------AACTGGGTAAGGT-----GAC------TTAACATCCCCTAAATAAA---CTTGAG------
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22280272 69 + 158406734 TGTAAGTTATTAAACTGGACAAGGTGACTTAACTGGACAAGGT-----GAC------TTAACATTCCCTAAATAAA-----TGAG------
i calJac3.chr6              I 200 C 0
s saiBol1.JH378108           50512402 51 +  54856640 TGCAAGCTATTA------------------AACTGGGCAAGGT-----AAC------TTAACATTCCCTAAATAAA-----TGAG------
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       655252 51 -   2910086 TGCAAGCTATTA------------------AACTGGGCAAGGT-----GAC------TTAACATTCCCTAAATAAA-----TGAG------
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40681496 51 +  42888418 TGCAAGCTATTA------------------AACTGGGCAAGGT-----GAT------TTAACATTCCCTAAATAAA-----TGAG------
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81394823 58 + 145441459 TACTTCTTAGTA------------------AATAGGGTAAGGTGCTCAGAT------TTAACACTCTCCAAGCAAA---TTTGCt------
i mm10.chr7                 C 0 I 8
s canFam3.chr3               54445435 62 +  91889043 TACAGGCTATTA------------------AACAGGGTAAGGT-----AACTAAGATTTAATATTCCCTAAATAAAAAGTCTAAA------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1849640 65 +   3943991 TGCAAGTTTTCA------------------ATTAGGGTAAGGT-----GATTTAGATTTAACTTTCCTAAAATACA---TTTAAAGTTAAA
i dasNov3.JH570731          C 0 C 0
e otoGar3.GL873530             670922 1286 -  36342412 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=78512.000000
s hg38.chr15_KI270850v1_alt    374108 13 +    430880 TA-GTT------TTTGCAGA
s panTro5.chr15              63527200 13 +  83230942 TA-GTT------TTTGCAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80484160 13 +  99763055 TC-GTT------TTTGCAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        84446 13 -   1709092 TA-GTT------TTTGCAGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17243880 13 - 121039945 TA-GTT------TTTGCAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60924599 13 + 169600520 TT-GTT------TTTGCAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108451341 13 - 171882078 TT-GTT------TTTGCAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        64755 13 -   2311642 TT-GTT------TTTGCAGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        60254 13 -   1987038 TT-GTT------TTTGCAGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21140931 13 -  24206276 TT-GTT------TTTGCAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        71220 13 -   1397330 TT-GTT------TTTGCAGA
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22280341 13 + 158406734 TA-TTT------TTTGCAGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50512453 13 +  54856640 TA-TTT------TTTGCAGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       655303 14 -   2910086 TATTTT------TTTGCAGC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40681547 14 +  42888418 TATTTT------TTTGCAGC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             672208 10 -  36342412 TA-GTT------TTT---TA
i otoGar3.GL873530          I 1286 C 0
s mm10.chr7                  81394889 15 + 145441459 tt-gtttg----tttgCAAA
i mm10.chr7                 I 8 I 1715
s canFam3.chr3               54445497 12 +  91889043 -A-ATT------TTTAAACA
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1849705 13 +   3943991 -------AAAACTTTGAAAA
i dasNov3.JH570731          C 0 C 0
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=788751.000000
s hg38.chr15_KI270850v1_alt    374121 82 +    430880 TAAAAGCCCATATT-----AGATTTCAAA---TTTG--ACATCAGGAGTTCAATGACAAAATGATATTAGGATCATA----AATTTA-----AAT-----AAGCCA
s panTro5.chr15              63527213 82 +  83230942 TAAAAGCCCGTATT-----AGATTTCAAA---TTTG--ACATCAGGAGTTCAATGACAAAATGATATTAGGATCATA----AATTTA-----AAT-----AAGCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80484173 82 +  99763055 TAAAAGCCCGTATT-----AGATTTCAAA---TTTG--ACATCAGGAGTTCAATGACAAAATGATATTAGGATCATA----AATTTA-----AAT-----AAGCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        84459 82 -   1709092 TAAAAGCCCATATT-----AGATTTCAAA---TTTG--ACATCAGGAGTTCAATGACAAAATGATATTAGGGTCATA----AATTTA-----AAT-----AAGCCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17243893 82 - 121039945 TAAAAGCCCATATT-----AGATTTCAAA---TCTG--ACATCAGGAGTTCAATGACAAAATGATATTAGGATCATA----AATTTA-----AAT-----AAGCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60924612 82 + 169600520 TAAAAGCCCATATT-----AGATTTCAAA---TTTG--ACATCAGGAGTTCAATGACAAAATGAAATTAGGATCATA----AATTTA-----AAT-----AAGCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108451354 82 - 171882078 TAAAAGCCCATATT-----AGATTTCAAA---TTTG--ACATCAGGAGTTCAATGACAAAATGAAATTAGGATCATA----AATTTA-----AAT-----AAGCca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        64768 82 -   2311642 TAAAAGCCCATATT-----AGATTTCAAA---TTTG--ACATCAGGAGTTCAATGACAAAATGAAATTAGGATCATA----AATTTA-----AAT-----AAGCCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        60267 82 -   1987038 TAAAAGCCCATATT-----AGATTTCAAA---TTTG--ACATCAGGAGTTCAATGACAAAATGAAATTAGGATCATA----AATTTA-----AAT-----Aagtca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21140944 82 -  24206276 TAAAAGCCCATATT-----AGATTTCAAA---TCTG--ACATCAGGAGTTCAATGACAAAATGAAATTAGGATCATA----AATTTA-----AAT-----AAGCCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        71233 82 -   1397330 TAAAAGCCCATATT-----AGATTTCAAA---TTTG--ACATCAGGAGTTCAATGACAAAATGAAATTAGGATCATA----AATTTA-----AAT-----Aagtca
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22280354 75 + 158406734 TAAAAGCCCATATT-----ATATTTCAAA---TTTG--ACATCAGGAATTCAATG---AAACGAAATCAGGATC--------ATTTA-----AAT-----AAGCAa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50512466 75 +  54856640 TAAAAGCCCATATT-----ATATTTCAAA---TTTG--ACATCAGGAATTAAATG---AAATGAAAAAAGGATC--------ATTTA-----AAC-----AAGCAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       655317 75 -   2910086 TAAAAGCCCATATT-----ATATTTCAAA---TTTG--ACATCAAGAATTCAATG---AAATGAAATCAGGATC--------ATTTA-----AAT-----AAGCAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40681561 75 +  42888418 TAAAAGCTCGTATT-----ATATTCCAAA---TTTG--ACAACAGGAATTCAATG---GAATGAAATCAGGATC--------ATTTA-----AAT-----AAGCAA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             672218 86 -  36342412 CAAAGATCCATGTT-----AAA----AAGGTTTTTG--ACATTCTAAGTTCAGTAGCAAAATGAAATTAGAATTATA----ATCCTA-----AATACAACAGATCA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81396619 77 + 145441459 taaaagaaaataat-----aaatT--------TTTG------CATGAGACCAATGACAAAATGAAATTAGGATGATAATACAATGTA-----AAC-----ATACCA
i mm10.chr7                 I 1715 I 2264
s canFam3.chr3               54445510 91 +  91889043 GAAAAATCCATGTT--AAGAGATTTTAAA---CTTCACACATTATGAGTTCAATGACAATACAAAATTAGAACTACA-----ATTTA-----AATACAACAaacca
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1849718 96 +   3943991 TAAAAGTCACTATTAAAAGAAATTTAAAA---TTTG--ACATTAGGAGTCCAATGACAATATGAAATGAAGATTATAATTCAACTTAAAAACAAT-----AAACCA
i dasNov3.JH570731          C 0 C 0
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=748315.000000
s hg38.chr15_KI270850v1_alt    374203 76 +    430880 CAAAACATTAAAAATAAGAGTGACT-TTGGAGGGCATTTAGCGGAAGCCCTTTA-TTTCACAGTAGGAAGACCCT-CCC
s panTro5.chr15              63527295 76 +  83230942 CAAAACATTAAAAATAAGAGGGACT-TTGGAGGGCATTTAGCGGAAGCCCTTTA-TTTCACAGTAGAAAGACCCT-CCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80484255 76 +  99763055 CAAAACATTAAAAATAAGAGGGACT-TTGGAGGGCATTTAGCGGAAGCCCTTTA-TTTCACAGTAGAAAGACCCT-CCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        84541 76 -   1709092 CAAAACATTAAAAATAAGAGGGACT-TTGGAGGGCATTTAGTGGAAGCCCTTTA-TTTCACAGTAGAAAGACCCT-CCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17243975 77 - 121039945 CAAAACTTTAAAAATAAGAGGGACT-TTGGAGGCCATTTAGTGGAAGCCCTTTA-TTTCACAGTAGAAAGACCCTCCCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60924694 76 + 169600520 CAAAACATTAAAAATAAGAGGGACT-TTGGAGGCCATTTAGTGGAAGTCCTTTA-TTTCACAGTAGAAAGACCCT-CCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108451436 76 - 171882078 caaaacattaaaaataagagggact-ttggaggccatttagtggaagtccttta-tttcacagtagaaagaccct-ccg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        64850 76 -   2311642 CAAAACATTAAAAATAAGAGGGACT-TTGGAGGCCATTTAGTGGAAGTCCTTTA-TTTCACAGTAGAAAGACCCT-GCG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        60349 76 -   1987038 caaaacattaaaaataagagggact-ttggaggccatttagtGGAAGTCCTTTA-TTTCACAGTAGAAAGACCCT-CCG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21141026 76 -  24206276 CAAAACATTAAAAACAAGAGGGACT-TTGGAGGCCATTTAGTGGAAGTCTTTTA-TTTCACAGTAGAAAGACCCT-CCG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        71315 76 -   1397330 caaaacattaaaaataagagggact-ttggaggccatttagtGGAAGTCCTTTA-TTTCACAGTAGAAAGACCCT-CCG
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22280429 76 + 158406734 caaaacattaaaaataagaagggct-ttggagtccatttagtgcaagcccttta-tttcacagTAGAAAGACCCT-TTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50512541 73 +  54856640 CAAAACATTAAAAAT---aaggact-ttggagtccatttagtgcaagcccttta-tttcacagTAGAAAGACCCT-TTC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       655392 73 -   2910086 CAAAACATTAAAAAT---aaggact-ttggagtccatttagtgcaagcccttta-tttcacagCAGAAAGACCCT-TTC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40681636 76 +  42888418 CAAAACATTAAAAATAAGAAGGACT-TTGGAGTCCATTTAGTACAAGACCTTTA-TTTCACAGTAGAAAGACCCT-TTC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             672304 48 -  36342412 CAGAACATTAAAG-----------------------------TGAAGCCTCTCA-TTTCACAGCAGAAACAACTT-CCC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54445601 74 +  91889043 cagaatattaaaaataaaaggaact-ttggagtccacttagtccacgcctctca-cttcacagcagaaactctct-c--
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1849814 77 +   3943991 CAAAACATTAAAA-TAGAAGGGACTCTTGTAGTACACTTAGTCCAAAACCTTTCTTTTCACAACAGAAACACTCT-GAC
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81396696 2264 + 145441459 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=3091211.000000
s hg38.chr15_KI270850v1_alt    374279 292 +    430880 CCCAGTACTAATTCCAGAAGCCTTAAGTGCTGATCTCTGCATAGTTCCCTCTACCCCCA---------TAAATGTACTCATTTATTCTCCAGAC-AAAATGATGCAACATATCTAC--GTTTGGAAACTAGACCACATTCTCCA--AAGTGGAAGTAA---TACAGACTGTGA-TCAAGACACAACCAACAGTTAAGCTTTCAGCGGCAAAGTCTGGACATTCCAGCAGATGGGGGTGGTACCATGCAGAATAAGACTTTCAAAATTTAAATGAAACATCACATTCT-C-ACTTTTCAA----------------------------------------------------------------------GGGAGAAAAAGAG
s panTro5.chr15              63527371 293 +  83230942 CCCAGTACTAATTCCAGAAGCCTTAAGTGCTGATCTCTGCATAGTTCCCTCTACCCCCA---------TAAATGTACTCATTTATTCTCCAGAC-AAAATGATGCAACATATCTAC--GTTTGGAAACTAGACCACATTCTCCA--AAGTGGAAGTAA---TCCAGACTGTAA-TCAAGACACAACCAACAGTTAAGCTTTCAGCGGCAAAGTCTGGACATTCCAGCAGATGGGGGTGGTACCATGCAGAATAAGACTTTCAAAATTTAAATGAAACATCACATTCT-CTACTTTTCAA----------------------------------------------------------------------GGGAGAAAAAGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80484331 293 +  99763055 CCCAGTACTAATTCCAGAAGCCTTAAGTGCTGATCTCTGCATAGTTCCCTCTACCCCCA---------TAAATGTACTCATTTATTCTCCAGAC-AAAATGATGCAACATATCTAC--GTTTGGAAACTAGACCACATTCTCCA--AAGTGGAAGTAA---TCCAGACTGTAA-TCAAGACACAACCAACAGTTAAGCTTTCAGCGGCAAAGTCTGGACATTCCAGCAGATGGGGGTGGTACCATGCAGAATAAGACTTTCAAAATTTAAATGAAACATCACATTCT-CTACTTTTCAA----------------------------------------------------------------------GGGAGAAAAAGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        84617 293 -   1709092 CGCAGTACTAATTCCAGAAGCCTTAAGTGCTGATCTCTGCATAGTTCCCTCTACCCCCA---------TAAATGTACTCATTTATTCTCCAGAC-AAAATGATGCAACATATCTAC--GTTTGGAAACTAGACCACATTCTCCA--AAGTGGAAGTAA---TCCAGACTGTGA-TCCAGACACAACCAACAGTTAAGCTTTCAACGGCAAAGTCTGGACATTCCAGCAGATGGGGGTGGTACCATGCAGAATAAGACTTTCAAAATTTAAATGAAACATCACATTCT-CTACTTTTCAA----------------------------------------------------------------------GGGAGAAAAAGAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17244052 293 - 121039945 CCCAGTACTAATTCCAGAAGCCTTAAGTGCTCATCTCTGCATAGTTCCCTCTACCCCCA---------TAAATGTACTCATTTATTCTCCAGAC-AAAATGATGCAACATATCTAC--GTTTGGAAACTAGACCACATTCTCCA--AAGTGGAAGTAA---TCCAGACTGTGA-TCAAGACACAACCAACAGTTAAGCTTTCAGCGGCAAAGTCTGGACATTCCAGCAGATGGGGATGGTACCATGCAGAATAAGACTTTCAAAATTTAAATGAAACATCACATTCT-CTACTTTTCAA----------------------------------------------------------------------GGGAGAAAAAGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60924770 293 + 169600520 CCCAGTACTAAATCTAGAAGCCTTAAGTGCTGATCTCTGCATAGTTCACTCTACCCCCA---------TAAATGTACTCATTTATTCTCTAAAC-AAAATGATGCAACATATCTAC--GTTTGGAAACTAGACCATATTCTCCA--AAGTGGAAGTAA---TCCAGACTGTGA-TTAAGACATAACCAACAATTAAGCTTTCAGTGGCAAAGTCTGGACATTCCAGCAGATGGGGATGGTACCATGCAGAATAAGACTTTCAAAATTTAAATGAAACATCACATTCT-CTATTTTTCAA----------------------------------------------------------------------GGGAGAAAAAGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108451512 294 - 171882078 cccagTACTAATTCTAGAAGCCTTAAGTGCTGATCTCTGCATAGTTCACTCTACCCCCA---------TAAATGTACTCATTTATTCTCTAAAC-AAAATGATGCAACATATCTAC--GTTTGGAAACTAGACCATATTCTCCA--AAGTGGAAGTAA---TCCAGACTGTGA-TTAAGACACAACCAACAATTAAGCTTTCAGTGGCAAAGCCTGGACATTCCAGCAGATGGGGATGGTACCATGCAGAATAAGACTTTCAAAACTTAAATGAAACATCACATTCTCCTATTTTTCAA----------------------------------------------------------------------GGGAGAAAAAGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        64926 293 -   2311642 CCCAGTACTAATTCTAGAAGCCTTAAGTGCTGATCTCTGCATAGTTCACTCTACCCCCA---------TAAATGTACTCATTTATTCTCTAAAC-AAAATGATGCAACATATCTAC--GTTTGGAAACTAGACCATATTCTCCA--AAGTGGAAGTAA---TCCAGACTGTGA-TTAAGACACAACCAACAATTAAGCTTTCAGTGGCAAAGTCTGGACATTCCAGCAGATGGGGATGGTACCATGCAGAATAAGACTTTCAAAATTTAAATGAAACATCACATTCT-CTATTTTTCAA----------------------------------------------------------------------GGGAGAAAAAGAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        60425 295 -   1987038 CCCAGTACTAATTCTAGAAGCCTTAAGTGCTGATCTCTGCATAGTTCACTCTACCCCCA---------TAAATGTACTCATTTATTCTCTGAAC-AAAATGATGCAACATATCTAT--GTTTGGAAACTAGACCATATTCTCCAAGAAGTGGAAGTAA---TCCAGACTGTGA-TTAAGACACAACCAACAATTAAGCTTTCAGTGGCAAAGTCTGGACATTCCAGCAGATGGGGATGGTACCATGCAGAATAAGACTTTCAAAATTTAAATGAAACATCACATTCT-CTATTTTTCAA----------------------------------------------------------------------GGAAGAAAAAGAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21141102 288 -  24206276 CCCAGTACTAATTCTAGAAGCCTTAAGTGCTGATCTCTGCATAGTT-----TACCCCCA---------TAAATGTACTAATTTATTCTCTAAAC-AAAATGATGCAATATATCTAC--GTTTGGAAACTAGACCATATTCTCCA--AAGTGGAAGTAA---TCCAGACTGTGA-TCAAGACACAACCAACAATTAAGCTTTCAGTGGCAAAGTCTGGACATTCCAGCAGATGGGGATGGTACCATGCAGAATAAGACTTTTAAAATTTAAATGAAACATCACATTCT-CTATTTTTCAA----------------------------------------------------------------------GGGAGAAAAAGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        71391 293 -   1397330 CCCAGTACTAATTCTAGAAGCCTTAAGTGCTGATCTCTGCATAGTTCACTCTACCCCCA---------TAAATGTACTCATTTATTCTCTGAAC-AAAATGATGCAACATATCTAC--GTTTGGAAACTAGACCATATTCTCCA--AAGTGGAAGTAA---TCCAGACTGTGA-TTAAGACACAACCAACAATTAAGCTTTCAGTGGCAAAGTCTGGACATTCCAGCAGATGGGGATGGTACCATGCAGAATAAGACTTTCAAAATTTAAATGAAACATCACATTCT-CTATTTTTCAA----------------------------------------------------------------------GGGAGAAAAAGAG
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22280505 292 + 158406734 CCCAGTGCTAATTCCAGAAGCCTTAAGTGCTGATTTCTGCATAGTTCCCTCTACCCCCA---------TAAATGTACTCATTTATTCTTCATAC-AAAATGATGCAACACATCTAC--ATTTGGAAACTAGAACACATTCTCCA--AAGTGGAAGTAA---TCCAGACTGTGA-TCAAGACACAACCAACAGTTAAGCTTTCAGTGGCAAAACCTGGACATTCCAGCAGATGGGGATGGTACTATGCAGAATAAGACTTTCAAAATTTAAATGAAA-ATCATATTCT-CTATTTTTCAA----------------------------------------------------------------------GGGAGAAAAAGAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50512614 289 +  54856640 CACAGTGCTAATTCCAGAAGCCTTAAGAGCTCATCTCTGCATAGTTCCCTCTACCCCCA---------TAAAGGTACTCATTTA---TTCAGAC-AAAATGATGCAACATATCTAC--ATTTGGAAACTAGAACACATTTTCCA--AAGTGGAAGTAA---TCCAGACTCTGA-TCAAGAAACAACCAACAGTTAAGCTTTCAGTGGCAAAGCCTGGACATTCCAGCAGATGGGGATGGTACTATGCAGAAGACGACTTTCAAAATTTGAATGAAA-ATCATATTCT-CTATTTTTCAA----------------------------------------------------------------------GGGAGAAAAAGAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       655465 364 -   2910086 CCCAGCGCTAATTCCAAAAGCCTTAAGTGCTGATCTCTGCATAGTTCCCTCTACCCCCA---------TAAATGTACTCATTTATTCTTCAGAC-AAAATGATGCAACATACCTACATATTTGGAAACTAGAACACATTTTCCA--AAGTGGAAGTAA---TCCAGATTGTGA-TCAAGAAACAACCAACAGTTAAGCTTTCAGTGGCAAAGCCTGGACATTCCAGCAGATGGGGATGGTACTATGCAGAATAAGACTTTCAAAATTTAAATGAAA-ATCACATTCT-CTATTTTTAAAGGAGATAAAGAGCAGGAAACTTATTTGACTTTCAAAATTTCAATGAAAATCACATTCTCTATTTTTCAAGGGAAAAAAAAGAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40681712 302 +  42888418 CCCAGCGCTAATTCCAGAAGCCTTAAGTGCTGATCTCTGCATAGTTCCCTCTACCCCCATAAATGTACTAAATGTACTCATTTATTCTTCAGACAAAAATGATGCAACCTATCTAC--ATTTGGAAACTAGAACACATTCTCCA--AAGTGGAAGTAA---TCCAGACTGTGA-TCAAGACACAACCAACAGTTAAGCTTTCAGTGGCAAAGCCTGGACATTCCAGCAGATGGGGATGGTACTATGCAGATTAAGACTTTCAAAATTTAAATGAAA-ATCACATTCT-CTATTTTTCAA----------------------------------------------------------------------GGCAGAAAAAGAG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             672352 229 -  36342412 ACC---------------------------------------------CTGTCCCCCCA--------ATAATTGTACTCATTTCTTCTTCAGAT---------GTAAAACATCTAC--AGTTGGAAGCCAGAACACATACCCCA--AAGCAGAAGTAA---TCAACACTGTGC-TCAATAC------------CAACCCTTAAGGGGCAAAGCCTTGACGTTCCAGCAGATGGGGATGGCACGATGCAGACCAAGGCTTTCAGAAATTAAAGGAAGTATCACATTCC-CTACTTTCCAA----------------------------------------------------------------------GTGCGAAAAAGAA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81398960 271 + 145441459 CCTAATACTGATTTCTGAAACCTTTA-CCTTCATCTCTG---AGTGGCCTCCTAGCCTG---------TAACGTTATTCATTTATTTTTCAGTC-AAAA-GAGGTAAAATATTTAC--ATTTGGAAGTTG----------------AAACATAAGTAA---TTTTGTCAGTGA-TTAAGACATGA-------TCAAGTTCTTAGTAGCACAACTCTCACAGTCCAGCAGATGGGGATGGTGCCACACAGACCAAGGCTTTTAAAGATCGAATTCAACACCA-GTCTT-CAGTTTCACAA-----------------------------------------------------------------ATAAGGTGAGAAAAAGAA
i mm10.chr7                 I 2264 C 0
s canFam3.chr3               54445675 277 +  91889043 ctTGGTGCAGATTCT---GGCTTTGACCCTTGACCTCTGCACAGCT---------CCCA---------TCACTGGACCTGCTGCTTCTTCAGTC-AGAAAGAAATACAACACCTAC--ATTCAGAAGGTGGAGTGCACACACTA--CAGTGGGAGTAG---TCTTACCTGTGGCTCAAAACATCATCAAGCCTTCA-CTTTAAGTGGCAAAGCCCTGCCCTTCCAGCAGATGGGGATGGCATCTCACAGATCAAGGGTTTTA-----TAAATTCAACCTCAAAAACC-CTACTTTACAA---------------------------------------------------------------------AGTGAGAAAGAAAG
i canFam3.chr3              C 0 I 1918
s dasNov3.JH570731            1849891 282 +   3943991 -CTCATACTGATTCCAGAGGTCTTAAGCCTTGATCTCTGTATAGT-CTATCTTCCTCTA---------TGAGTGTACTCCTTTCATCTTCAGTC-AAAAAGACTTAAAATATCTAC--AATCTGAAATCAGAAAGTACACACTA--AAGTGGAAGTAATCTTCCTGAC--TAA-TCAAAACACAACAGTC---TCAGCTTTTAGTGGCTAAACTCTGGCATTCCAGCAGATGGGGATGGTGTCATGCAGACAAG---CTTAAGAAATCAAATGAAA---CACATTTC-CTATTATTTAA----------------------------------------------------------------------AACAAAAAAGAA-
i dasNov3.JH570731          C 0 C 0
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=2149050.000000
s hg38.chr15_KI270850v1_alt    374571 234 +    430880 C-AGAAAACTTATTTTTGAAGTCCAGGAAGAACTAGGCAACTTACAACTATCACCACATTCctcaaaacaaccccatggagaagacaggcattatatcccttttacaagcat--taaagccatggcacaaaacaggtgaagcaa-tttgaccaa---------gCTAAGCACTC--ATCTCATTCAAAA-CCCGAGCCCTTCCC--CCACCATGCCCTTTA-------TACAATTATATTGTAAAATTCCATT------TTGTT--T
s panTro5.chr15              63527664 234 +  83230942 C-AGAAAACTTATTTTTGAAGTCCAGGAAGAACTAGGCAACTTACAACTATCACCACATTCCTCAAAACAACCCCATGGAGAAGACAGGCATTACATCCCTTTTACAAGCAT--TAAAGCCATGGCACAAAACAGGTGAAGCAA-TTTGACCAA---------GCTAAGCACTC--ATCTCATTCAAAA-CCCAAGCCCTTCCC--CCACCATGCCCTTTA-------TACAATTATATTGTAAAATTCCATT------TTGTT--T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80484624 234 +  99763055 C-AGAAAACTTATTTTTGAAGTCCAGGAAGAACTAGGCAACTTACAACTATCACCACATTCCTCAAAACAACCCCATGGAGAAGACAGGCATTACATCCCTTTTACAAGCAT--TAAAGCCATGGCACAAAACAGGTGAAGCAA-TTTGACCAA---------GCTAAGCATTC--ATCTCATTCAAAA-CCCAAGCCCTTCCC--CCACCATGCCCTTTA-------TACAATTATATTGTAAAATTCCATT------TTGTT--T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        84910 232 -   1709092 C-AGAAAACTTATTTTTGAAGTCCAGGAAGAACTAGGCAACTTACAACTATCACCACATTCCTCAAAACAACCCCATGGAGAAGACAGGCATTACATCCCTTTTACAAGCAT--TAAAGCCATGGCACAAAACAGGTGAAGCAA-TTTGACCAA---------GCTAAGCACTC--ATCTCATTCAAAA-CCCAAGCCCTTCCC--CCACCATGCCCTTTA-------TACAATTATATTGTAAAATTCCA--------TTGTT--T
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17244345 234 - 121039945 C-AGAAAACTTATTTTTGAAGTTCAGGAAGAActaggcaacttacaactatcaccacattcctcaaaacaaccccatggagaagacaggcattacatccattttacaagcat--taaagccatggcacaaaaaaggtgaagcaa-tttgaccaa---------gCTATGCACTC--ATCTCATTCAAAA-CCCAAGCCCTTCCC--CCACCATGCCCTTTA-------TACAATTATATTGCAAAATTCCATT------TTGTT--T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60925063 233 + 169600520 C-AGGAAACTTATTTTTGAAGTCCAGGGAGAActaggcaacttacaactatcaccacattcctcaatacaaccccatggagaagacaggcattacatccattttacaagcat--taaagccatggcacaaaaaaggtgaaacaa-tttgaccaa--------------gcactcagATCTCACTCAAAA-CCCAAGCCCTTCCC--CAACCATGCCCTTTA-------TACAGTAATACTGTAAAATTCCATC------TTGTTGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108451806 233 - 171882078 C-AGGAAACTTATTTTTGAAGTCCAGGGAGAActaggcaacttacaactatcaccacattcctcaatacaaccccatggagaagacaggcattacatccattttacaagcat--taaagccatggcacaaaaaaggtgaagcaa-tttgaccaa--------------gcactcagATCTCACTCAAAA-CCCAAGCCCTTCCC--CAACCATGCCCTTTA-------TACAGTAATACTGTAAAATTCCATC------TTGTTGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        65219 233 -   2311642 C-AGGAAACTTATTTTTGAAGTCCAGGGAGAACTAGGCAACTTACAACTATCACCACATTCCTCAATACAACCCCATGGAGAAGACAGGcattacatccactttacaagcat--taaagccatggcacaaaaaaggtgaagcaa-tttgaccaa--------------gcactcagATCTCACTCAAAA-CCCAAGCCCTTCCC--CAACCATGCCCTTTA-------TATAGTAATACTGTAAAATTCCATC------TTGTTGTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        60720 233 -   1987038 C-AGGAAACTTATTTTTGAAGTCCAGGGAGAActaggcaacttacaactatcaccacattcctcaatacaaccccatggagaagacaggcattacatccattttacaagcat--taaagccatggcacaaaaaaggtgaagcaa-tttgaccaa--------------gcactcagATCTCACTCAAAA-CCCAAGCCCTTCCC--CAACCATGCCCTTTA-------TACAATAATACTGTAAAATTCCATC------TTGTTGTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21141390 233 -  24206276 C-AGGAAACTTATTTTTGAAGTCCAGGGAGAActaggcaacttacaactatcatcacattcctcaatacaaccccatggagaagacaggcattacatccattttacaagcat--taaagccatggcacaaaaaaggtgaagtaa-tttgaccaa--------------gcactcagATCTCACTCAAAA-CCCAAGCCCTTCCC--CAACCATGCCCTTTA-------TACAATAATACTGTAAAATTCCATC------TTGTTGTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        71684 233 -   1397330 C-AGGAAACTTATTTTTGAAGTCCAGGGAGAActaggcaacttacaactatcaccacattcctcaatacaaccccatggagaagacaggcattacatccattttacaagcat--taaagccatggcacaaaaaaggtgaagcaa-tttgaccaa--------------gcactcagATCTCACTCAAAA-CCCAAGCCCTTCTC--CAACCATGCCCTTTA-------TACAATAATACTGTAAAATTCCATC------TTGTTGCT
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22280797 245 + 158406734 C-AGAAAACTTGTTTTTGAAGTCCAAGAGGAGCTAGGCAACGTACAACTATAACCAAATtcctcaaaacaaccccatggagaagacaggtattacatccattttataagcac--tgaagtcacggcacagaagaggtgaagcaa-tctgaccaaggtcacacagctgagcactcagatcccattcaaaa-cccaagcccttacc--ccaccatgcccttta-------tacaattatattgtAAAATTCCatt------tattt--a
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50512903 243 +  54856640 C-AGAAAACTTGTTTTTGAAGTCCAAAAGGAgctaggcaacgtacaactatcaccatattcctcaaaacaacaccatggagaaa--aggcattacatccattttacaagcac--tgaagtcacagaaaagaagaggtgaagcaa-tctgaccaagatcacacagctaagcactcagatcccattcaaaa-cccaagcccttacc--ccaccatgcccttta-------tacaattatattgtAAAATTCCATT------TTATT--T
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       655829 245 -   2910086 C-AGAAAACTTGTTTTTGAAGTCCAAGAGGAACTAGGCAacgtacaactatcaccatattcctcaaaacaaccccatggagaagacaggcattacatccattttacaagcac--tgaagtcacggcacagaagaggtgaagcaa-tctgaccaaggtcacacagctaagcacccagatcccattcaaaa-cccaagcccttacc--ccaccatgcccttta-------tacAATTAAATTGTAAAATTCCATT------TTGTT--T
i cebCap1.NW_016107610v1    C 0 I 337
s aotNan1.NW_018505940v1     40682014 245 +  42888418 C-AGAAAACTTGTTTTTGAAGTCCAAGAGGAgccaggcaatgtacaactatcaccatattcctcaaaacaaccccatggagaagacaggcatcacatccattttacaagcac--cgaagtcacggcacagaagaggtgaagcaa-tctgaccaaggtcacacagctaagcactcagatcccattcaaaa-cccaagcccttacc--ccaccatgcccttta-------tacaattatattgtAAAATTCCAtt------ttttt--t
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             672581 229 -  36342412 C-AG-AACCTTATTTTTGAGGTTTAAGAGAAGCTAAGCAATTTATAACCATTACCAGAATTCTCAAAACAACCCCATGGAAAATGAAAACATTATATCCATTTTATAAGTACCATGTAGCCATGGTACAAA-----CGCAGCTA------------------------CCACTCACATCCCATTCCAAA-CCCAGGCCCTTCCCCACCCCCATGCCCTTTGACAATTTTACAATT-TATTATCAAATTTCATTAAAAAGTAA-----
i otoGar3.GL873530          C 0 I 1
s mm10.chr7                  81399231 182 + 145441459 CAAGAAAATTAACTTTTTAAGTTTAAGAGG-GCTATAAAACTTATAA-------------------------ACCATGGAgcaggaaggtgtcatgcccattttataaatat-----------gattcaaaagaagtaaagcaatttttaccaa------------ggtcacatagGTCCCATT--AAA-CCAATGTCACTTTG--TCCTGATGTTCTTTA-------------AAGGTTATTTAATTT------------------
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1850173 218 +   3943991 C-AGAAAACTTATTTTTGAGATCCAAAAGGAGAtaagcagtttacaatcctttctataatcctcaaaacaaccccatggaga----aagcattgtgtccattttacaatgac--tgaagtcaaggctcaaaagagataaaacaa-tctgaccacagtcacaaggtcagcaaagaagatgtaattccaaacccCGTGACCTTCTA----------------A-------CAAAATTTTACAGAAAAAGTC------------------
i dasNov3.JH570731          C 0 C 0
e canFam3.chr3               54445952 1918 +  91889043 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=14698.000000
s hg38.chr15_KI270850v1_alt    374805 3 +    430880 TTT
s panTro5.chr15              63527898 3 +  83230942 TTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80484858 3 +  99763055 TTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        85142 3 -   1709092 TTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17244579 3 - 121039945 TTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60925296 3 + 169600520 TTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108452039 3 - 171882078 TTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        65452 3 -   2311642 TTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        60953 3 -   1987038 TTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21141623 3 -  24206276 TTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        71917 3 -   1397330 TTT
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22281042 3 + 158406734 ttt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50513146 3 +  54856640 TTT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40682259 3 +  42888418 ttt
i aotNan1.NW_018505940v1    C 0 I 627
s otoGar3.GL873530             672811 2 -  36342412 TC-
i otoGar3.GL873530          I 1 C 0
s mm10.chr7                  81399413 3 + 145441459 TGT
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1850391 2 +   3943991 TC-
i dasNov3.JH570731          C 0 C 0
e canFam3.chr3               54445952 1918 +  91889043 I
e cebCap1.NW_016107610v1       656074 337 -   2910086 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=-1920.000000
s hg38.chr15_KI270850v1_alt    374808 1 +    430880 A
s panTro5.chr15              63527901 1 +  83230942 A
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80484861 1 +  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        85145 1 -   1709092 A
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17244582 1 - 121039945 A
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60925299 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108452042 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        65455 1 -   2311642 T
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        60956 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21141626 1 -  24206276 T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        71920 1 -   1397330 T
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22281045 1 + 158406734 a
i calJac3.chr6              C 0 I 320
s saiBol1.JH378108           50513149 1 +  54856640 A
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873530             672813 1 -  36342412 A
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81399416 1 + 145441459 A
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1850393 1 +   3943991 A
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40682262 627 +  42888418 I
e canFam3.chr3               54445952 1918 +  91889043 I
e cebCap1.NW_016107610v1       656074 337 -   2910086 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=18719.000000
s hg38.chr15_KI270850v1_alt    374809 5 +    430880 AAATA
s panTro5.chr15              63527902 5 +  83230942 AAATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80484862 5 +  99763055 AAATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        85146 5 -   1709092 AAATA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17244583 5 - 121039945 AAAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60925300 5 + 169600520 AAAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108452043 5 - 171882078 AAAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        65456 5 -   2311642 AAAAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        60957 5 -   1987038 AAAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21141627 5 -  24206276 AAAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        71921 5 -   1397330 AAAAA
i manLeu1.NW_012106908v1    C 0 C 0
s saiBol1.JH378108           50513150 5 +  54856640 AAGTA
i saiBol1.JH378108          C 0 I 298
s otoGar3.GL873530             672814 4 -  36342412 AAAT-
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH570731            1850394 5 +   3943991 GGACA
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40682262 627 +  42888418 I
e mm10.chr7                  81399417 0 + 145441459 C
e calJac3.chr6               22281046 320 + 158406734 I
e canFam3.chr3               54445952 1918 +  91889043 I
e cebCap1.NW_016107610v1       656074 337 -   2910086 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=9708.000000
s hg38.chr15_KI270850v1_alt    374814 2 +    430880 GC
s panTro5.chr15              63527907 2 +  83230942 GC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80484867 2 +  99763055 GC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        85151 2 -   1709092 GC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17244588 2 - 121039945 GC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60925305 2 + 169600520 GC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108452048 2 - 171882078 GC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        65461 2 -   2311642 GC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        60962 2 -   1987038 GC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21141632 2 -  24206276 GC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        71926 2 -   1397330 GC
i manLeu1.NW_012106908v1    C 0 C 0
s otoGar3.GL873530             672818 1 -  36342412 -T
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH570731            1850399 2 +   3943991 AT
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40682262 627 +  42888418 I
e mm10.chr7                  81399417 0 + 145441459 C
e calJac3.chr6               22281046 320 + 158406734 I
e canFam3.chr3               54445952 1918 +  91889043 I
e cebCap1.NW_016107610v1       656074 337 -   2910086 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M
e saiBol1.JH378108           50513155 298 +  54856640 I

a score=18290.000000
s hg38.chr15_KI270850v1_alt    374816 3 +    430880 ATG
s panTro5.chr15              63527909 3 +  83230942 ATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80484869 3 +  99763055 ATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        85153 3 -   1709092 ATG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17244590 3 - 121039945 ATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60925307 3 + 169600520 ACA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108452050 3 - 171882078 ACA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        65463 3 -   2311642 ACA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        60964 3 -   1987038 ATA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21141634 3 -  24206276 ATA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        71928 3 -   1397330 ATA
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22281366 3 + 158406734 ATA
i calJac3.chr6              I 320 C 0
s saiBol1.JH378108           50513453 3 +  54856640 ACA
i saiBol1.JH378108          I 298 C 0
s otoGar3.GL873530             672819 3 -  36342412 ATA
i otoGar3.GL873530          C 0 I 1
s dasNov3.JH570731            1850401 3 +   3943991 ACA
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40682262 627 +  42888418 I
e mm10.chr7                  81399417 0 + 145441459 C
e canFam3.chr3               54445952 1918 +  91889043 I
e cebCap1.NW_016107610v1       656074 337 -   2910086 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=137093.000000
s hg38.chr15_KI270850v1_alt    374819 19 +    430880 -------CAAGTAATAAGTAAAAGAT
s panTro5.chr15              63527912 19 +  83230942 -------CAAGTAATAAGTAAAAGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80484872 19 +  99763055 -------CAAGTAATAAGTAAAAGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        85156 19 -   1709092 -------CAAGTAATAAGTAAAAGAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17244593 19 - 121039945 -------CAAGTAATAAGTAAAAGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60925310 19 + 169600520 -------CAAGTAATAAGTAAAAGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108452053 19 - 171882078 -------CAAGTAATAAGTAAAAGAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        65466 19 -   2311642 -------CAAGTAATAAGTAAAAGAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        60967 19 -   1987038 -------CAAGTAATAAGTAAAAGAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21141637 19 -  24206276 -------CAAGTAATAAGTAAAAGAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        71931 19 -   1397330 -------CAAGTAATAAGTAAAAGAT
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22281369 19 + 158406734 -------CAAGTAAAAAGTAAACGAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50513456 19 +  54856640 -------CAAGCAAAAAGTAAACAAC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40682889 19 +  42888418 -------CAAGTAAAAAGTAAACGAA
i aotNan1.NW_018505940v1    I 627 C 0
s otoGar3.GL873530             672823 16 -  36342412 -------AAAGTAAAAAGAGTAG---
i otoGar3.GL873530          I 1 C 0
s mm10.chr7                  81399417 14 + 145441459 --------AAGTCACAAATAAA----
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1850404 23 +   3943991 TAAACACGGAGTAAGAAGTAAAA---
i dasNov3.JH570731          C 0 C 0
e canFam3.chr3               54445952 1918 +  91889043 I
e cebCap1.NW_016107610v1       656074 337 -   2910086 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=592414.000000
s hg38.chr15_KI270850v1_alt    374838 67 +    430880 GATCACTTTCACATCTCGGC----AGCGTTCCTTG-TCCTCAATCCTACTCTCTTCTCTGAATGAACAGTTT
s panTro5.chr15              63527931 67 +  83230942 GATCACTTTCACATCTCGGC----AGCGTTCCTTG-TCCTCAATCCTACTCTCTTCTTTGAATGAACAGTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80484891 67 +  99763055 GATCACTTTCACATCTCGGC----AGCGTTCCTTG-TCCTCAATCCTACTCTCTTCTTTGAATGAACAGTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        85175 65 -   1709092 GATCACTTTCACATCTCTGC----AGCGTTCCTTG-TCCTCAATCCTA--CTCTTCTCTGAATGAACAGTTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17244612 67 - 121039945 GATCACTTTCACATCTCTGC----AATGTTCCTTG-TCCTCAATCCTACTCTCTTCTCTGAATGAACAGTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60925329 67 + 169600520 GCTCACTTTCACTTCTCTGC----AATGTTCCTTG-TCCTCAATCCTACTCTTTTCTCTGAATGAACAGTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108452072 67 - 171882078 GCTCACTTTCACTTCTCTGC----AATGTTCCTTG-TCCTCAATCCTACTCTTTTCTCTGAATGAACAGTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        65485 67 -   2311642 GCTCACTTTCACTTCTCTGC----AATGTTCCTTG-TCCTCAATCCTACTCTTTTCTCTGAATGAACAGTTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        60986 67 -   1987038 GCTCACTTTCACTTCTCTGC----AATGTTCCTTG-TCCTCAATCCTACTCTTTTCTCTGAATGAACAGTTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21141656 67 -  24206276 GCTCACTTTCACTTCTCTGC----AATGTTCCTTG-TCCTCAATCCTACTCTTTTCTCTGAATGAACAGTTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        71950 67 -   1397330 GCTCACTTTCACTTCTCTGC----AATGTTCCTTG-TCCTCAATCCTACTCTTTTCTCTGAATGAACAGTTT
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22281388 63 + 158406734 GATCACTTTCACATCTCTGT----AACATTCCTTG-TCCTCAAGCCTACTCTATTCTC----TGAACAGTTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50513475 63 +  54856640 GATCACTGTCATATCTCCGT----AGCATTCCTTG-TCCTCAATCCTACTCTTTTCTC----TGAACAGTTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       656411 63 -   2910086 GATCACTGTCACATCTCTGT----AGCATTCCTCG-TCCTCAATCCTACTCTCTTCTC----TGAACAGTTT
i cebCap1.NW_016107610v1    I 337 C 0
s aotNan1.NW_018505940v1     40682908 63 +  42888418 GATCACTTTCACATTTCTGT----AACATTCCTTG-TCCTCAATCCTACTCTCTTCTC----TGAACAGTTT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             672839 61 -  36342412 GATTACTTTCACATTTTTGA----AACACCATTCA-TTCTCGATCCTACTCTCCTC------TGAGCAATTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81399431 55 + 145441459 GATTCCTTCGTAATCT--GC----AGTGTTTCTCA-TCCTCAG-------CTTGTGTT---GAGAAAAGTTT
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1850427 66 +   3943991 GATCATTTTCATATC-CTGCAACAAACACTCCTTGCTGGTCAATACTA-----TTCTCTGAATTAATAATTT
i dasNov3.JH570731          C 0 I 6728
e canFam3.chr3               54445952 1918 +  91889043 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=48021.000000
s hg38.chr15_KI270850v1_alt    374905 5 +    430880 --GAG--AT
s panTro5.chr15              63527998 5 +  83230942 --GAG--AT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80484958 5 +  99763055 --GAG--AT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        85240 5 -   1709092 --GAG--AT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17244679 5 - 121039945 --GAG--AT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60925396 5 + 169600520 --GAG--AT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108452139 5 - 171882078 --AAG--AT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        65552 5 -   2311642 --GAG--AT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        61053 5 -   1987038 --GAG--AT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21141723 5 -  24206276 --GAG--AT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        72017 5 -   1397330 --GAG--AT
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22281451 5 + 158406734 --GAG--AT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50513538 5 +  54856640 --GAG--AT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       656474 5 -   2910086 --GAG--AT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40682971 5 +  42888418 --GAG--AT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             672900 7 -  36342412 AAGAG--AC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81399486 7 + 145441459 --AAAGCAT
i mm10.chr7                 C 0 C 0
e dasNov3.JH570731            1850493 6728 +   3943991 I
e canFam3.chr3               54445952 1918 +  91889043 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=115890.000000
s hg38.chr15_KI270850v1_alt    374910 10 +    430880 ATTCCTTTTG
s panTro5.chr15              63528003 10 +  83230942 ATTCCTTTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80484963 10 +  99763055 ATTCCTTTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        85245 10 -   1709092 ATTCCTTTTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17244684 10 - 121039945 ATTCCTTTTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60925401 10 + 169600520 ATTCCTTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108452144 10 - 171882078 ATTCCTTTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        65557 10 -   2311642 ATTCCTTTTG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        61058 10 -   1987038 ATTCCTTTTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21141728 10 -  24206276 ATTCCTTTTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        72022 10 -   1397330 ATTCCTTTTG
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22281456 10 + 158406734 ACTCCTTTTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50513543 10 +  54856640 ACTCCTTTTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       656479 10 -   2910086 ACTCCTTTTA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40682976 10 +  42888418 ACTCCTTTTA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             672907 10 -  36342412 ATTCCTTTTA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81399493 10 + 145441459 AGTCCTTTTA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54447870 10 +  91889043 ATTTCTTTTA
i canFam3.chr3              I 1918 C 0
e dasNov3.JH570731            1850493 6728 +   3943991 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=339263.000000
s hg38.chr15_KI270850v1_alt    374920 29 +    430880 TACCATTTCC----------------------------------TATGCATTTGTGAacactg
s panTro5.chr15              63528013 29 +  83230942 TACCATTTCC----------------------------------TATGCATTTGTGAacactg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80484973 29 +  99763055 TACCATTTCC----------------------------------TATGCATTTGTGAacactg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        85255 29 -   1709092 TACCATTTCC----------------------------------TATGCATTTGTGAacactg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17244694 29 - 121039945 TACCATTTTC----------------------------------TATGCATTTGTGAacactg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60925411 29 + 169600520 TACCATTTTC----------------------------------TATGCATTTGTGAACAATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108452154 29 - 171882078 TACCATTTTC----------------------------------TATGCATTTGTGAacactg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        65567 29 -   2311642 TACCATTTTC----------------------------------TATGCATTTGTGAacactg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        61068 29 -   1987038 TACCATTTTC----------------------------------TATGCATTTGTGAACACTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21141738 29 -  24206276 TACCATTTTC----------------------------------TATGCATTTGTGAacactg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        72032 29 -   1397330 TACCATTTTC----------------------------------TATGCATTTGTGAACACTG
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22281466 29 + 158406734 TACCATTTTC----------------------------------GATGcatttctgaacactg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50513553 29 +  54856640 TACCATTTTC----------------------------------GATGCATTTGTGAACACTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       656489 29 -   2910086 TAACATTTTC----------------------------------GATGCATCTGTGAACACTG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40682986 29 +  42888418 AAACATTTTC----------------------------------GATGCATTTGTGAACACTG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             672917 29 -  36342412 TATTATTTTC----------------------------------TATGCTTTTGTGAACAACT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81399503 63 + 145441459 TGGCATTTTCTTTGTATCCtttttaaaaagattttatttatttttatgtatatgagtacactg
i mm10.chr7                 C 0 I 153
s canFam3.chr3               54447880 29 +  91889043 TATCATTTTC----------------------------------TTTGCATTTGTGAACACCT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1857221 29 +   3943991 TACTGTTTTC----------------------------------TATGCATTTGGGAATACTT
i dasNov3.JH570731          I 6728 C 0
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=920275.000000
s hg38.chr15_KI270850v1_alt    374949 84 +    430880 ttaccaacactggtactattcaac-tttaagttctgccaatatgataggtt------aaaaaAT--ACACTACTTAATAAATGAGAATCTTGA
s panTro5.chr15              63528042 84 +  83230942 ttaccaacactggtactattcaac-tttaagttctgccaatatgataggtt------aaaaaAT--ACACTACTTAATAAATGAGAATCTTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80485002 84 +  99763055 ttaccaacactggtactattcaac-tttaagttctgccaatatgataggtt------aaaaaAT--ACACTACTTAATAAATGAGAATCTTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        85284 84 -   1709092 ttaccaacactggtactattcaac-tttaagttctgccaatatgacaggtt------aaaaaAT--ACACTACTTAATAAATGAGAATCTTGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17244723 84 - 121039945 ttaccaacactggtactattcaac-tttaagttctgccaatatgataggtt------aaaaaAT--ACACTACTTAATAAATGAGAATCTTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60925440 84 + 169600520 TTACCAACACTGGTACTATTCAAC-TTTAAGTTCTGCCAATATGATAGGTC------AAAAAAT--ACACTAATTAATAAATGAGAATCTTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108452183 84 - 171882078 ttaccaacactggtactattcaac-tttaagttctgccaatatgataggtc------aaaaaAT--ACACTAATTAATAAATGAGAATCTTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        65596 84 -   2311642 ttaccaacactggtactattcaac-tttaagttctgccaatatgataggtc------aaaaaAT--ACACTAATTAATAAATGAGAATCTTGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        61097 84 -   1987038 TTACCAACACTGGTACTATTCAAC-TTTAAGTTCTGCCAATATGATAGGTC------AAAAAAT--ACACTAATTAATAAATGAGAATCTTGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21141767 85 -  24206276 ttaccaacactggtactattcaac-tttaagttctgccaatatgataggtc-----aaaaaAAT--ACACTAATTAATAAATGAGAATCTTGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        72061 84 -   1397330 TTACCAACACTGGTACTATTCAAC-TTTAAGTTCTGCCAATATGATAGGTC------AAAAAAT--ACACTAATTAATAAATGAGAATCTTGA
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22281495 85 + 158406734 ttaccaacactggtactatccaacttttaagttctgccagtatgatagatt------aaaaTAT--ACGCTACTTAATAAATGAGAATCTTGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50513582 84 +  54856640 TTACCAACACTGGTACTACTCAAC-TTTAAGTTCTGCCAATATGATAGATT------AAAATAT--ACGCTACTTAATAAATGAGAATCTTGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       656518 84 -   2910086 TTACCAACACTGGTACTATTCAAC-TTTAAGTTCTGCCAATATGATAGATT------AAAATAT--GTGCTACTTAATAAATGAGAATCTTGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40683015 84 +  42888418 TTACCAATACTGGTACTATTCAAC-TTTAAGTTCTGCCAATATGATAGATT------AAAATAT--ACGCTACTTAACAAATGAGAATCTTGA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             672946 78 -  36342412 TTACCAATGTTG-------TTAAC-TTTTGGTTCTGCTACTGTGGTAAATT------AAAAATC-AACAGTAATTAATAATCTAGAGTCTAGA
i otoGar3.GL873530          C 0 I 594
s mm10.chr7                  81399719 78 + 145441459 TTTCCAACACTGGTATGACTTTAC-TGTAAGTTCCATGAACATTATAGGCT------ACAAAAG--ACTTTAATGACT------GAATTTTGT
i mm10.chr7                 I 153 C 0
s canFam3.chr3               54447909 81 +  91889043 TTACCAACACTGGTGTTATCCAAT-------TTCTGTCAATGTGTTAGGTTTAAAAAAAAAAAA--AAAGTACTTA---AGTGAGATTCTTAT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1857250 86 +   3943991 CTGCCAATGACAGTACTATCCAAC-TTTTAGTTGTGCCAATGTTGTAAGTA------AAATTTTTTTTTTTACTTGCTAAATGAGTGTCTTAT
i dasNov3.JH570731          C 0 C 0
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=1400890.000000
s hg38.chr15_KI270850v1_alt    375033 155 +    430880 gtgtcaggcact--agctaggcaaccagg-atata-agtgaag-aaaaaaaaaaaa-----gttacagctctt--gtctttttg-ggtttactattgtagtggtagaga-a---aaacctg-ataatggtgtaagtgataaag-tataattgtgagcaaggtgctaggaaggaa
s panTro5.chr15              63528126 157 +  83230942 GTGTCAGGCACT--AGCTAGGCAACCAGG-ATATA-AGTGAAG-AAAAAAAAAAAAA---AGTTACAGCTCTT--GTCTTTTTG-GGTTTACTATTGCAATGGTAGAGA-A---AAACCTG-ATAATGGTATAAGTGATAAAG-TATAATTGTGAGCGAGGTGCTAGGAAGGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80485086 154 +  99763055 GTGTCAGGCACT--AGCTAGGCAACCAGG-ATATA-AGTGAAG-AAAAAAAAAAA------GTTACAGCTCTT--GTCTTTTTG-GGTTTACTATTGTAATGGTAGAGA-A---AAACCTG-ATAATGGTATAAGTGATAAAG-TATAATTGTGAGCGAGGTGCTAGGAAGGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        85368 155 -   1709092 GTGTCAGGCACT--AGCTAGGCAACCAGG-ATATA-AGTGAAG-AAAAAAAAAAAA-----GTTACAGCTCTT--GTCTTTTTG-GGTTTACTATTGTAGTGGTAGAGA-A---AAACCTG-ATAATGGTATAAGTGATAAAG-TATAATTGTGAGCGAGGTGCTAGGAAGGAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17244807 160 - 121039945 GTGTCAGGCACT--AGCTAGGCAACCAGG-ATATA-AGTGAAG-AAAAAAAAAAAAAAACAGTTACAGCTGTT--GTCTTTTTG-GGTTTGCTATTGTAGTGGTAGAGA-A---AAACCTG-ATAATGGTGTAAGTGATAAAG-TATAATTGTGAGTGAGGTGCTAGGAAGGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60925524 157 + 169600520 GTGTCAGGCACT--AGCTAGGCAACCAGG-ATATA-AGTGAAG----AAAAAAAAAAAACAGTTACAGCTCTT--GTCTTTTTG-GGGTTACTATTGTAGTGGTAGAGA-A---AAACCtg-ataatggtataagtgataaag-tataattgtgagtgaagtgCCAGGAAGGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108452267 160 - 171882078 GTGTCAGGCACT--AGCTAGGCAACCAGG-ATATA-AGTGAAG-AAAAAAAAAAAAAAACAGTTACAGCTCTT--GTCTTTTTG-GGGTTACTATTGTAGTGGTAGAGA-A---AAACCTG-ATAATGGTATAAGTGATAAAG-TATAATTGTGAGTGAGGTGCCAGGAAGGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        65680 158 -   2311642 GTGTCAGGCACT--AGCTAGGCAACCAGG-ATATA-AGTGAAG---AAAAAAAAAAAAACAGTTACAGCTCTT--GTCTTTTTG-GGGTTACTATTGTAGTGGTAGAGA-A---AAACCTG-ATAATGGTATAAGTGATAAAG-TATAATTGTGAGTGAGGTGCCAGGAAGGAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        61181 159 -   1987038 gtgtcaggcact--agctaggcaaccagg-atata-agtgaag--aaaaaaaaaacaaacagttacagctctt--gtctttttg-gggttactattgtagtggtagaga-a---aaacctg-ataatggtataagtgataaag-tataattgtgagtgaggtgccaggaaggaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21141852 155 -  24206276 GTGTCAGGCACT--AGCTAGGCAACCAGG-ATATA-AG------AAAAAAAAAACAAAACAGTTACAGCTCTT--GTCTTTTTG-GGGTTACTATTGTAGTGGTAGAGA-A---AAACCTG-ATAATGGTATAAGTGATAAAG-TATAATTGTGAGTGAGGTGCCAGGAAGGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        72145 161 -   1397330 GTGTCAGGCACT--AGCTAGGCAACCAGG-ATATA-AGTGAAGAAAAAAAAAAACCAAACAGTTACAGCTCTT--GTCTTTTTG-GGGTTACTATTGTAGTGGTAGAGA-A---AAACCTG-ATAATGGTATAAGTGATAAAG-TATAATTGTGAGTGAGGTGCCAGGAAGGAA
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22281580 152 + 158406734 GTGTCAGGTACT--AGCAAGGCAACCAGG-GTAT-----GATA-AGAAAA----AAAAACAGCTACGGCTCTT--GTCTTCTTG-GGCTTAGTAGTGTAGTGGTAGAAA-A---AAATCTG-ATAATGGTATAAGTGATAAAG-TGTAATTGTGAGTGAAGTGCTAGGAAGGAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50513666 155 +  54856640 GTGTCAGGTACT--AGCCAGGCAAACAGG-ATAT-----GATA-AGAAAAAAAGAAAAACAGCTACAGCTCTT--GTCTTCTTG-GGCTTACTAGTGTAGCGGTAGAAA-A---AAA-CTG-AGAATGGTTTAAGTGATAAAG-TGTAATTGTGAGTGAAGTGCTAGGAAGCAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       656602 154 -   2910086 GTGTCA-GTACT--AGCCAGGCAACCAGG-GTAT-----GATA-AGAAAAAAAGAAAAACAGCTACAGCTCTT--GTCTTCTTG-GGCTTACTAGTGTAGCGGTAGAAA-A---AAT-CTG-AGAATGGTTTAAGTGATAAAG-TATAATTGTGAGTGAAGTGCTAGGAAGCAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40683099 155 +  42888418 GTGTCAGGTACT--AGCCAGGCAACCAGG-GTAT-----GGTA-AGAAAAAAAGAAAAACAGCTACAGCTCTT--GTCTTCTTG-GGTTTACTAGTGTAGTGGTAGAAA-A---AAT-CTG-ATAATGgtgtaagtgataaag-tgtaattctgagtgaagtgCTAGGAAGGAA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             673618 150 -  36342412 GTGTTAGGCACTAAAGCAAGGCAAGAGAG-ATACATAGTGAGT-GAGGAAAAA---------------CTCTT--TCCATTATGTTATTTATAAGTCTAGGGGTAGAAA-C---AAATCTA-ATAATCATGAAAGTGACAAAACTATCTTTGTAAACAAAGTGCAAGCAAAGAC
i otoGar3.GL873530          I 594 C 0
s mm10.chr7                  81399797 123 + 145441459 ATATTAGGCATT--AGGAAAGCAATT----------AACGGAG-GAAAAA---------CAGCTTCAAGTCTT--GATATCATG-GATTTACAAGTTTTGTGGTAGACA-C---AAAC-------------TAAATAATCACA-CA--------AATGAGGTGTTTGGAACAGA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54447990 147 +  91889043 GTGTCAGGTACC--AGCTA-----------ATATG---------ATAAGGAAGAAAAAACAGCTACAGCTCTTACACCTTTTAT-AGATTACAAGTCTAGAGGTGGAAC-AGTCAATCTAA-AGAATCATACAAGTGATGAAC-TGCCA-TGTGAGTGAAGTGCTAAGAGGAAA
i canFam3.chr3              C 0 I 335
s dasNov3.JH570731            1857336 156 +   3943991 TAATAAGGCACT--AGCTAGGTTAATAGGAATATG---------AGAATAAGGAAAAATAGACTAGTACTCTT--GGCTTTATG-GATTTACAAATCTAGTGGTGGAGACA---AAATCTATGTAATGATGTAGGTGATAAAC-TATTACTGTGAGTGAAGCCCTAGGAAGGAA
i dasNov3.JH570731          C 0 C 0
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=111773.000000
s hg38.chr15_KI270850v1_alt    375188 16 +    430880 -acagacatcaggataC
s panTro5.chr15              63528283 16 +  83230942 -ACAGACATCGGGATAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80485240 16 +  99763055 -ACAGACATCAGGATAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        85523 16 -   1709092 -ACAGACATCAGGATAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17244967 16 - 121039945 -ACAGACATCAGGATAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60925681 16 + 169600520 -AGAGACATCAGTATAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108452427 16 - 171882078 -AGAGACATCAGTATAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        65838 16 -   2311642 -AGAGACATCAGTATAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        61340 16 -   1987038 -aGAGACATCAGTATAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21142007 16 -  24206276 -AGAGACATCAGTATAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        72306 16 -   1397330 -AGAGACATCAGTATAC
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22281732 16 + 158406734 -AGAGAAATCAGTAAAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50513821 16 +  54856640 -AGAGAAATCAGTAAAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       656756 16 -   2910086 -AGAGAAATCAGGAAAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40683254 16 +  42888418 -AGAGAAATCAGGAAAT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             673768 16 -  36342412 -AGAGACATGATGATAC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81399920 16 + 145441459 -TACGGAACTAGAGAAG
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1857492  9 +   3943991 AGAGGATAT--------
i dasNov3.JH570731          C 0 C 0
e canFam3.chr3               54448137 335 +  91889043 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=1232341.000000
s hg38.chr15_KI270850v1_alt    375204 126 +    430880 AAAAGTATGT-AAGGTGGTTTCTGG-CCTAATA-GGGGAACAGTAGTTAGAATTTCCTTGGGTAAGTATGCCTTTCAGATAT-TTGTTAACCTCATTTGGAATGTTAATCTAATTTGATTGGAAGGTTGA
s panTro5.chr15              63528299 126 +  83230942 AAAAGTATGT-AAGGTGGTTTCTGG-CCTAATG-GAGGAACAGTAGTTAGAATTTCCTTGGGTAAGTATGCCTTTCAGATAT-TTGTTAACCTCATTTGGAATGTTAATCTAATTTGATTGGAAGGTTGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80485256 126 +  99763055 AAAAGTATGT-AAGGTGGTTTCTGG-CCTAATG-GAGGAACAGTAGTTAGAATTTCCTTGGGTAAGTAAGCCTTTCAGATAT-TTGTTAACCTCATTTGGAATGTTAATCTAATTTGATTGGAAGGTTGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        85539 126 -   1709092 AAAAGTATGT-AAGGTGGTTTCTGG-CCTAATG-GGGGAACAGTAGTTAGAATTTCTTTGGGTAAGTATGCCTTTCAGATAT-TTGTTAACCTCATTTGGAATGTTAATCTAATTTGATTGGAAAGTTGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17244983 126 - 121039945 AAAAGTATGT-AAGGTGGTTTCTGG-CCTAATG-GGGGAACAGTAGTTAGAATTTCCTTGGGTAAGTACGCCTTTCAGATAT-CTGTTAACCTCATTTGCAATGTTAATCTAATTTGATTGGAAGGTTGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60925697 121 + 169600520 AAAAGTATGT-AAGATGGTTTCTGG-CCTAATG-GGGTAACAGTAGTTAGAATTTCC-----TAAGTATGCCTTTCAGATAT-TTGTTAATCTCATTTGCAGTGTTAATCTAATTTGATTGGAAGGTTGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108452443 126 - 171882078 AAAAGTATGT-AAGATGGTTTCTGG-CCTAATG-GGGTAACAGTAGTTAGAATTTCCTTGGGTAAGTATGCCTTTCAGATAT-TTGTTAATCTCATTTGCAGTGTTAATCTAATTTGATTGGAAGGTTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        65854 126 -   2311642 AAAAGTATGT-AAGATGGTTTCTGG-CCTAATG-GGGTAACAGTAGTTAGAATTTCCTTGGGTAAGTATGCCTTTCAGATAT-TTGTTAATCTCATTTGCAGTGTTAATCTAATTTGATTGGAAGGTTGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        61356 126 -   1987038 AAAAGTATGT-AAGATGGTTTCTGG-CCTAATG-GGGTAACAGTAGTTAGAATTTCCTTGGGTAAGTATGCCTTTCAGATAT-TTGTTAATCTCATTTGCAGTGTTAATCTAACTTGATTGGAAGGTTGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21142023 126 -  24206276 AAACGTATGT-AAGATGGTTTCTGG-CCTAAAG-GGGTAACAGTAGTTAGAATTTCCTTGGGTAAGTATGCCTTTCAGATAT-TTGTTAATCTCATTTGCAGTGTTAATCTAATTTGATTGGAAGGTTGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        72322 126 -   1397330 AAAAGTATGT-AAGATGGTTTCTGG-CCTAATG-GGGTAACAGTAGTTAGAATTTCCTTGGGTAAGTATGCCTTTCAGATAT-TTGTTAATCTCATTTGCAGTGTTAATCTAACTTGATTGGAAGGTTGA
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22281748 126 + 158406734 AGACGTTTGT-AAGGTGGTTTCTGG-ACTAATG-GGGAAGCAGTAGTTAGAATTTCCTTGGGTAAGTATGCTTTTCAGATAT-TTGTTAATATCACTTGCAAGGTTAATCTAATTTGATTAGAAGGTTGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50513837 121 +  54856640 AGA-----AT-AAGGTGGTTTCTGG-ATTAACG-GGGGAGCACTAGTTAGAATTTCCTTGGGTAAGTATGCTTTTCGGATAT-TTGTTAATATCATTTGCAAAGTTAATCTAATTTAATTAGAAGGTTGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       656772 126 -   2910086 AGAAGTTTGT-AAGCTGGTTTCTGG-ACTAATG-GGGGAGCAGTAGTTAGAATTTCCTTGGGTAAGTATGCTTTTCAGATAT-TTGTTAATATCATTTGCAAGGTTAATCTAATTTGATTAGAAGGTTGA
i cebCap1.NW_016107610v1    C 0 I 432
s aotNan1.NW_018505940v1     40683270 126 +  42888418 AGAAGTTTGT-AAGGTGGTTTCTGG-ACTAATG-GGGAAGTAGTAGTTAGAATTTCCTTGGGTAAGTATGCTTTTCAGATAT-TTGTTAATATCATTTGCAAGGTTAATCTAATTTGATTAGAAAGTTGA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             673784 108 -  36342412 AAAAGCAAAT-ATAGGGTTTCCTGG-TCCTATG-GGAATGTGGTAGTTAAAATTTCTCCAGGTAAGCAAGCTTTACAAATAC-------------------ATGTTAATCTAATTTGATCAGTTGGTTGA
i otoGar3.GL873530          C 0 I 2
s mm10.chr7                  81399936 115 + 145441459 GAACACATG----GAGAGTTCCTGG-----ATGTGGGTGGAAAGGGTTTCAAATTCTCCAGGGAAGCAG--TTTTCAGTTATCTTGTTAGTGTAATTTGCCCTGTCCTTCAGC----ATGAAATGGCTGA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54448472 121 +  91889043 aaaaaaaaaa-aaaaaGGTCCCTGGGTCCAGTG-GGGAAAGGTAAGTTAAGACTTCCCTGAGGAAAAACACTTTTCAAATATCTTGTTAATCTGATTTACAATATC-------TTTGATTAGATAGTTGA
i canFam3.chr3              I 335 C 0
s dasNov3.JH570731            1857501 122 +   3943991 AGAAGTGTGTAAAGGGGGTGCCTGA-CCTAACA-GGG-AGTCTTGGTTAAAATTTCCCTGGA-ACGTATGCTCTTTGGATAGCTTGTTATTCTAACTTAGAATGTC--TTTGACT--ATAAGATGGTTGA
i dasNov3.JH570731          C 0 C 0
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=127844.000000
s hg38.chr15_KI270850v1_alt    375330 23 +    430880 AGCATTTTTTT---CAGATACAAAAA
s panTro5.chr15              63528425 23 +  83230942 AGCATTTTTTT---CAGATACAAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80485382 23 +  99763055 AGCATTTTTTT---CAGATACAAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        85665 22 -   1709092 AGCA-TTTTTT---CAGATACAAAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17245109 23 - 121039945 AGCACTTTTTT---CAGATACAAAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60925818 23 + 169600520 AGCATTTTTTT---CAGATAGAAAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108452569 23 - 171882078 AGCATTTTTTT---CAGATAGAAAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        65980 23 -   2311642 AGCATTTTTTT---CAGATAGAAAAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        61482 21 -   1987038 AGCATTTTTTT---CAGAT--AAAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21142149 23 -  24206276 AGCATTTTTTT---CAGATAGAAAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        72448 21 -   1397330 AGCATTTTTTT---CAGAT--AAAAA
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22281874 19 + 158406734 AACATTTTTTT---CAGATAG-A---
i calJac3.chr6              C 0 I 4
s saiBol1.JH378108           50513958 20 +  54856640 AACATTTTTTT---CAGACAGAA---
i saiBol1.JH378108          C 0 I 4
s aotNan1.NW_018505940v1     40683396 17 +  42888418 AACATTTTTTT---CAGATA------
i aotNan1.NW_018505940v1    C 0 I 4
s otoGar3.GL873530             673894 22 -  36342412 AACATTTTTTTTTCCAAATGTA----
i otoGar3.GL873530          I 2 I 4
s mm10.chr7                  81400051 20 + 145441459 AGTATTTTTTTTTCCAAATA------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54448593 21 +  91889043 ---ATCTTTTT--CCTAATAGAAAAA
i canFam3.chr3              C 0 I 4
s dasNov3.JH570731            1857623 15 +   3943991 AGCA-TCTTTT---CAAAC-------
i dasNov3.JH570731          C 0 C 0
e cebCap1.NW_016107610v1       656898 432 -   2910086 I
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=143025.000000
s hg38.chr15_KI270850v1_alt    375353 18 +    430880 ----AAAAAAAAAGCCACTAGC
s panTro5.chr15              63528448 15 +  83230942 ----AAAAAA---GCCACTAGC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80485405 14 +  99763055 ----AAAAA----GCCACTAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        85687 14 -   1709092 ----AAAAA----GCCACTAGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17245132 17 - 121039945 ----AAAAAAAA-GCCACTAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60925841 14 + 169600520 ----AAAAA----GCCACTAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108452592 14 - 171882078 ----AAAAA----GCCACTAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        66003 14 -   2311642 ----AAAAA----GCCACTAGC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        61503 14 -   1987038 ----AAAAA----GCCACTAGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21142172 14 -  24206276 ----AAAAA----GCCACTAGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        72469 14 -   1397330 ----AAAAA----GCCACTAGC
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22281897 14 + 158406734 ----AAAAA----GCCAGTAGC
i calJac3.chr6              I 4 C 0
s saiBol1.JH378108           50513982 14 +  54856640 ----AAAAA----GCCAGTAGC
i saiBol1.JH378108          I 4 C 0
s cebCap1.NW_016107610v1       657330 14 -   2910086 ----AAAAA----GCCAGTAGC
i cebCap1.NW_016107610v1    I 432 C 0
s aotNan1.NW_018505940v1     40683417 14 +  42888418 ----AAAAA----GCCAGTAGC
i aotNan1.NW_018505940v1    I 4 C 0
s otoGar3.GL873530             673920 14 -  36342412 ----AAACA----GCCAGTAGT
i otoGar3.GL873530          I 4 I 702
s mm10.chr7                  81400071 13 + 145441459 ----AAATA----ACCAAGAG-
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54448618 14 +  91889043 ----AAACA----GCCAGTAGC
i canFam3.chr3              I 4 C 0
s dasNov3.JH570731            1857638 18 +   3943991 AACAAAACA----GATAATAGC
i dasNov3.JH570731          C 0 C 0
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=361578.000000
s hg38.chr15_KI270850v1_alt    375371 34 +    430880 -TATCAATTTTCAGTTTATATCCTTTGCC--CTCTTT
s panTro5.chr15              63528463 34 +  83230942 -TATCAATTTTCAGTTTATATCCTTTGCC--CTCTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80485419 34 +  99763055 -TATCAATTTTCAGTTTATATCCTTTGCC--CTCTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        85701 34 -   1709092 -TATCAATTTTCAGTTTATATCCTTTGCC--CTCTTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17245149 34 - 121039945 -TATCAATTTTCAGTTTATATCCTTTGCC--CTCTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60925855 34 + 169600520 -TATCAATTTTCAGTTTATATCCTTTGCC--CTCTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108452606 34 - 171882078 -TATCAATTTTCAGTTTATATCCTTTGCC--CTCTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        66017 34 -   2311642 -TATCAATTTTCAGTTTATATCCTTTGCC--CTCTTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        61517 34 -   1987038 -TATCAATTTTCAGTTTATATCCTTTGCC--CTCTTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21142186 36 -  24206276 -TATCAATTTTCAGTTTATATCCTTTGCCCTCTCTTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        72483 34 -   1397330 -TATCAATTTTCAGTTTATATCCTTTGCC--CTCTTT
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22281911 34 + 158406734 -TATCAATTTTCAGTTTATATCCTTTGCC--CTCTTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50513996 33 +  54856640 -TACCAATTTTCAGTTTATAT-CTTTGCC--CTCTTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       657344 34 -   2910086 -TATCAATTTTCAGTTTATATCCTTTACC--CTCTTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40683431 34 +  42888418 -TATCAATTTTCAGTTTATATCATTTGCC--CTCTTT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             674636 31 -  36342412 -taccaaacttttgatgata--CTTTAC---CTCTTT
i otoGar3.GL873530          I 702 I 1
s mm10.chr7                  81400084 13 + 145441459 ----------------------CTCTGCC--CTGTTT
i mm10.chr7                 C 0 I 4
s canFam3.chr3               54448632 26 +  91889043 --------TATCAGTTCATAACC-CTGCC--CTCCTT
i canFam3.chr3              C 0 I 5
s dasNov3.JH570731            1857656 35 +   3943991 TGGTAAATTTTCAGTTCATATTCTTTGCC--CTCTTT
i dasNov3.JH570731          C 0 I 4
e colAng1.NW_012117110v1        76661 3842 -   1784207 M

a score=4814658.000000
s hg38.chr15_KI270850v1_alt    375405 447 +    430880 AAGAATGAGTTCTTAT---------------ACTGTGGCTTTTCCTTTACATCAA------TAAGCCAGTACTTATTGTCCTCTAGAAAG-AGAAA----TACCCTAAAAGAA-------AGAATACTCTAAAAATAATTTTGTTATACTTTTCTAAGCACT-----ATGTTAAAAGTGCTTTAAACT-CTAG-ACTATTT-AC---AGAGGC---------------------------------CTCTAGTTTTAAATG-TTATTCCCCTTT-----------AAAAAAAA------TTACATAAAATAAATTTGATCTCTCC----TTCTCTGCGTTTTTGGTCAGAACCAA-----------------------AAGTTACCTAAGCTACATTTTTGTCCAGGTCAGCCAGATTGCTGGTAAAAA---CTAA--C-TTCAATCAATCTGCATGAAAATGA----GTAGACCACCTACA-GTTAGTTTGTATTTCTGTGTTCATCGGGAAAGAATCTAAAGAAGTT----GTAGG---TTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACATA-CA
s panTro5.chr15              63528497 448 +  83230942 AAGAATGAGTTCTTAT---------------ACTGTGGCTTTTCCTTTACATCAA------TAAGCCAGTACTTATTGTCCTCTAGAAAG-AGAAA----TACCCTAAAAGAA-------AGAATACTCTAAAAATAATTTTGTTATACTTTTCTAAGCACT-----ATGTTTAAAGTGCTTTAAACT-CTAG-ACTATTT-AC---AGAGGC---------------------------------CTATAGTTTTAAATG-TTATTTCCCTTT-----------AAAAAAAA-----ATTACATAAAATAAATTTGATCTCTCC----TTCTCTGTGTTTTTGGTCAGAACCAA-----------------------AAGTTACCTAAGCTACATTTTTGTCCAGGTCAGCCACATTGCTGGTAAAAG---CTAA--C-TTCAATCAATCTGCATGAAAATGA----GTAGACCACCTACA-GTTAGTTTGTATTTCTGTGTTCATCGGGAAAGAATCTAAAGAAGTT----GTAGG---TTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACATA-CG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80485453 448 +  99763055 AAGAATGAGTTCTTAT---------------ACTGTGGCTTTTCCTTTACATCAA------TAAGCCAGTACTTACTGTCCTCTAGAAAG-AGAAA----TACCCTAAAAGAA-------AGAATACTCTAAAAATAATTTTGTTATACTTTTCTAAGCACT-----ATGTTTAAAGTGCTTTAAACT-CTAG-ACTATTT-AC---AGAGGC---------------------------------CTATAGTTTTAAATG-TTATTTCCCTTT-----------AAAAAAAA-----ATTACATAAAATAAATTTGATCTCTCC----TTCTCTGTGTTTTTGGTCAGAACCAA-----------------------AAGTTACCTAAGCTACATTTTTGTCCAGGTCAGCCACATTGCTGGTAAAAA---CTAA--C-TTCAATCAATCTGCATGAAAATGA----GTAGACCACCTACC-GTTAGTTTGTATTTCTGTGTTCATCGGGAAAGAATCTAAAGAAGTT----GTAGG---TTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACATA-CG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        85735 446 -   1709092 AAGAATGAGTTCTTAT---------------ACTGTGGTTCTTCCTTTACATCCA------TAAGCCAGTACTTATTGTCCTCTAGAAAG-AGAAA----TACCCTAAAAGAA-------AGAATACTCTAAAAATAATTTTGTTATACTTTTCTAAGCACT-----ATGTTTAAAGTGCTTTAAACT-CTAG-ACTATTT-AC---AGAGGC---------------------------------CTCTAGTTTTAAATG-TTATTTTCCTTT-----------AAAAAAA-------TTACATAAAATAAATTTGATCTCTCC----TTCTCTGCGTTTTTGGTCAGAACCAA-----------------------AAGTTACCTAAGCTACATTTCTGTCCAGGTCAGCCAGACTGCTGGTAAAAA---CTAA--C-TTCAATCAATCTGCATGAAAATGA----GTAGACCACCTACA-GTTAGTTTGTATTTCTGTGTTCATCAGGAAAGAATCTACAGAAGTT----GTAGG---TTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACATA-CG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17245183 449 - 121039945 AAGAATGAGTTCTTCT---------------ACTGTGGCTTTTCCTTTACATCAA------TAAGCCAGTTCTTACTGTCCTCTAGAAAG-AGAAA----TACCCTAAAAGAA-------AGAATACTCTAAAAATAATTTTGTTATACTTTTCTAAGCACT-----ACTTTTAAAGTGCTTTAAACT-CTAG-ACTATTT-AC---AGAGGC---------------------------------CTCTAGTTTTAAATG-TTATTTTCCTTt-----------aaaaaaaaaaaagattacataaaataaaTTTGATCTCTC-------CTCTGCGTTTTTGGTCGGAACCAA-----------------------AAGTTACCTAAGCTACATTT-TGTCCAGGTCAGCCAGACTGCTAGTAAAAA---CTAA--C-TTCAATCAATCTGCATGAAAATGA----GTAGACCACCTACA-GTTAGTTTGTATTTCTGTGTTCATCGGGAAAGAATCTAAAGAAGTT----GTAGG---TTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACATA-CC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60925889 462 + 169600520 AAGAATGAGTTCTTAT---------------ACTGAGGCTTTTACTTTGCATCAA------TAAGCCAGTACTTATTGTCCTCTAGAAAG-AGAAA----TACCCTAAAAGAA-------GGAATACTCTAAAAATAATTTTGTTACACTTTTCTAAGCACT-----ACGTTTAAAGTGCTTTAAA---CTAG-ACGATTT-AC---AGAGGC---------------------------------CTCTAGTTTTAAATG-TTATTTTCCTTTaaaaaaaaaaaaaaaaaaaaaaaGATTGCATAAAATAAATTTGATCTCTCC----TTCTCTGCGTTTTCAGTCGGAACCAA-----------------------AAGTTACCTAAGCTACATTTTTGTCCAAGACAGTCAGATTGCTGGTAAAAA---CTAA--C-TTCAATCAACCTGCATGAAAATGA----GTAGACCACTTACA-GTTAGTTTGTATTTCTGTGTTCATTAGGAAAGAATCTAAGGAAGTT----GTAGG---TTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACATA-CC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108452640 459 - 171882078 AAGAATGAGTTCTTAT---------------ACTGTGGCTTTTACTTTGCATCAA------TAAGCCAGTACTTATTGTCCTCTGGAAAG-AGAAA----TACCCTAAAAGAA-------GGAATACTCTAAAAATAATTTTGTTACACTTTTCTAAGCACT-----ACGTTTAAAGTGCTTTAAA---CTAG-ACGATTT-AC---AGAGGC---------------------------------CTCTAGTTTTAAATG-TTATTTTCCTTT---aaaaaaaaaaaaaaaaaaaaGATTGCATAAAATAAATTTGATCTCTCC----TTCTCTGCATTTTCAGTCGGAACCAA-----------------------AAGTTACCTAAGCTACATTTTTGTCCAAGACAGTCAGATTGCTGGTAAAAA---CTAA--C-TTCAATCAACCTGCATGAAAATGA----GTAGACCACTTACA-GTTAGTTTGTATTTCTGTGTTCATTGGGAAAGAATCTAAGGAAGTT----GTAGG---TTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACATA-CC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        66051 457 -   2311642 AAGAATGAGTTCTTAT---------------ACTGTGGCTTTTACTTTGCATCAA------TAAGCCAGTACTTATTGTCCTCTAGAAAG-AGAAA----TACCCTAAAAGAA-------GGAATACTCTAAAAATAATTTTGTTACACTTTTCTAAGCACT-----ACATTTAAAGTGCTTTAAA---CTAG-ACGATTT-AC---AGAGGC---------------------------------CTCTAGTTTTAAATG-TTGTTTTCCTTT-----aaaaaaaaaaaaaaaaaaGATTGCATAAAATAAATTTGATCTCTCC----TTCTCTGCGTTTTCAGTCGGAACCAA-----------------------AAGTTACCTAAGCTACATTTTTGTCCAAGACAGTCAGATTGCTGGTAAAAA---CTAA--C-TTCAATCAACCTGCATGAAAATGA----GTAGACCACTTACA-GTTAGTTTGTATTTCTGTGTTCATTGGGAAAGAATCTAAGGAAGTT----GTAGG---TTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACATA-CC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        61551 454 -   1987038 AAGAATGAGTTCTTAT---------------ACTGTGGCTTTTACTTTGCATCAA------TAAGCCAGTACTTATTGTCCTCTAGAAAG-AGAAA----TACCCTAAAAGAA-------GGAATACTCTAAAAATAATTTTGTTACACTTTTCTAAGCACT-----ACGTTTAAAGTGCTTTAAA---CTAG-ACGATTT-AC---AGAGGC---------------------------------CTCTAGTTTTAAATG-TTATTTTCCTTt--------aaaaaaaaaaaaaaagattacataaaataaaTTTGATCTCTCC----TTCTCTGCGTTTTCAGTCGGAACCAA-----------------------AAGTTACCTAAGCTACATTTTTGTCCAAGACAGTCAGATTGCTGGTAAAAA---CTAA--C-TTCAATCAATCTGCATGAAAATGA----GTAGACCACTTACA-GTTAGTTTGTATTTCTGTGTTCATTGGGAAAGAATCTAAGAAAGTT----GTAGG---TTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACATA-CC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21142222 457 -  24206276 AAGAATGAGTTCTTAT---------------ACTGTGGCTTTTACTTTGCATCAA------TAAGCCAGTACTTACTGTCCTCTAGAAAG-AGAAA----TACCCTAAAAGAA-------GGAATACTCTAAAAATAATTTTGCTACACTTTTCTAAGCAGT-----ACGTTTAAAGTGCTTTAAA---CTAG-ACGATTT-AC---AGAGGC---------------------------------CTCTAGTTTTAAATG-TTATTTTCCTTT-----aaaaaaaaaaaaaaaaaagattacataaaataaaTTTGATCTCTCC----TTCTCTGCGTTTTCGGTCGGAACCAA-----------------------AAGTTACCTAAGCTACATTTTTGTCCAAGACAGTCAGATTGCTGGTAAAAA---CTAA--C-TTCAATCAATCTGCATGAAAATGA----GTAGACCACTTACA-GTTAGTTTGTATTTCTGTGTTCATTGGGAAAGAATCTAAGGAAGTT----GTAGG---TTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACATA-CC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        72517 459 -   1397330 AAGAATGAGTTCTTAT---------------ACTGTGGCTTTTACTTTGCATCAA------TAAGCCAGTACTTATTGTCCTCTAGAAAG-AGAAA----TACCCTAAAAGAA-------GGAATACTCTAAAAATAATTTTGTTACACGTTTCTAAGCACT-----ACGTTTCAAGTGCTTTAAA---CTAG-ACGATTT-ACAAAAGAGGC---------------------------------CTCTAGTTTTAAATG-TTATTTTCCTTT------aaaaaaaaaaaaaaaaagattacataaaataaaTTTGATCTCTCC----TTCTCTGCGTTTTCAGTCGGAACCAA-----------------------AAGTTACCTAAGCTACATTTTTGTCCAAGACAGTCAGATTGCTGGTAAAAA---CTAA--C-TTCAATCAATCTGCATGAAAATGA----GTAGACCACTTACA-GTTAGTTTGTATTTCTGTGTTCATTGGGAAAGAATCTAAGGAAGTT----GTAGG---TTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACATA-CC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        80556 448 -   1784207 AAGAATGAGTTCTTAT---------------ACTGTGGCTTTTACTTTACATCAA------TAAGCCAGTACTTACTGTCCTTTAGAAAG-AGAAA----TATCCTAAAAGAA-------GGAATACTCTAAAAATAATTTTGTTACACTTTTCTACGCACT-----ACGTTTAAAGTGCTTTAAA---CTAG-ACGATTT-AC---AGAGGC---------------------------------CTCTAGTTTTAAATG-TTATTTTCCTTT--------------AAAAACAAAAATTACATAAAATAAATTTGATCTCTCC----TTCTCTGTGTTTTCGGTCAGAACCAA-----------------------AAGTTACCTAAGCTACATTTTTGTCCAGGTCAGTCAGATTGCTGGTAAAAA---CTAA--C-TTCAATCAATCTGCATGAAAATGA----GTAGACCACTTACA-GTTAGTTTTTATTTCTGTGTTCATTGGGAAAGAATCTAAGGAAGTT----GTAGG---TTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACATA-CC
i colAng1.NW_012117110v1    M 3842 C 0
s calJac3.chr6               22281945 438 + 158406734 AAGAATGAGTTCTTAT---------------CCTGTGGTTTTTCCTTTACATCAA------TAAGCCTGTACTTACTGTCCTCTAAAAAGAAAAAA----AACGCTAAAAGAA-------AGAATACTCTAAAAATAATTTTGTTATACTTTTCTAAGCACT-----ACCCTTAAAGTGCTTTAAACT-CTAG-ATTGTTT-AC---AAAGGC---------------------------------CTCTAGTTTTAAATG-TTATTTTCCTTT-----TAAAAAAAAAAAAGAAAAGATTACATTAAATAAATCTGATCTCTCC----TT---TGCATTTCTGGTTGGAACAAA--------------------------------AAGCTACAGTT-TGTCCAGGACAGCCAGGTTGCTAGTAAAAA---CTAA--C-TTCAATCAATCTGCATGAAA----------AGACC-CTTACA-GTTAGTTTG--TTTCTGTGTTCATTGGGAGAGAATGTAAGGAAGTG----GTAGA---TTCAGGCTGATTTCATAGCCATTCTAAATTTAGATTCACACAAA-CC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50514029 431 +  54856640 AAGAGTGAGTTCTTAT---------------CCTGTGGTTTTTCCTTTACATCAG------TAAGCCTGTACTTATTGTCCTCTAGAAAG-AGAAA----TACGCTAAAAGAA-------AGAATACTCTAAAAATAATTTTGTTATACTTTTCTAAGCACT-----ACACTTGATGTGCTTTAAACT-CTGG-ATTGTTT-AC---AGAGGC---------------------------------CTCTCGTTTTAAATG-TTATTTTCCTTT---------AAAAAAAAAAAAAAGATTACCTGAAATAAATCTGATCTCTCC----TT---TGCATTTCTGTTTGGAACAAA-----------------------AAGTTACCTAAGCTACATTT-TGTCCAG--------------TAGTAAAAA---CTAA--C-TTCAATCAATCTGCATGAAA----------AGACCACTTACA-GTTAGTTTGTATTTCTGTGTTCATTGGGAAAGAATGTAAGGAAGTT----GTAGG---TTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACACA-CC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       657378 433 -   2910086 ATGAACGAGTTCTTAT---------------CCTGTGGTTTTTCCTTTACATCAG------TAAGCCTGTACTTATTGTCCTCTAGAAAG-AGAAA----TATGCTAAAAGAA-----AGAGAATACTCTAAAAATAATTTTGTTACACTTTTCTAAGCACT-----ATACTT-----------------TAG-ACTGTTT-AC---AGAGGC---------------------------------CTCTAGTTTTAAATG-TTATTTTCCTTa------aaaaaaaaaaaaaaaaaGATTCCATTAAATAAATCTGATCTCTCC----TT---TGCATTTCTGGTTGGAACAAA-----------------------AAGTTACCTAAGCCACATTT-TGTCCAGGACAGCCAGGTTGCTAGTAAAAA---CTAA--C-TTCAATCAATCTGCA-GGAA----------AGACCACTTACA-GTTAGTTTGTATTTTTGTGTTCATTGGGAAAGAATGTAAGGAAGTT----GTAGG---TTCAGCCTGGTTTCACAGCTATTCTAAATTTAGATTcacacaca-cc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40683465 450 +  42888418 AAGAATGAGTTCTTAT---------------CCTGTGGTTTTTCCTTTACATCAA------TAAGCCTGTACTTATTGTCCTCTAGAAAG-AGAAA----TACGCTAAAAGAA-----AGAGAATACTCTAAAAATAATTTTGTTATACTTTTCTAAGCACT-----ACACTTAAAGTGCTTTAAACT-CTAG-ATTGTTT-AC---AGAGGC---------------------------------CTCTAGTTTTAAATG-TTATTTTCCTTT----------AAAAAAAAAAAAAGATTACATTAAATAAATCTGATCTTTCC----TT---TGCATTTCTGGTTGGAACAAA-----------------------AAGTTACCTAAGCTACATTT-TGTCCAGAACAGCCAGGTTGCTAGTAAAAA---CTAA--C-TTCAATCAATCTGCATGAAA----------AGACCACTTACA-GTTAGTTTGTATTTCTGTGTTCATTGGGAAAGAATGTAAGGAAGTTGTAGGTAGG---TTCAGGCTGGTTTCACAGCTATTCTAAATTTAGATTCACACACA-TC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             674668 449 -  36342412 AAGGATGAGTTCTTACTGATAAAAGGGAAAGACCACAG---------------GA------TAAATCAGTATTTCTTGTCCTCTCACCAG-TTAA-------------------------AAAATACCCTAAATATTATTTCATTATATTTTTCTAATCATTAGGTAATATTTAAAGCAGTTTAAACT-CCGGAACTATTTGGC---AGAGGC---------------------------------CACTAGTATTAAATG-TTATTTTCCTTA-------------ACAAAAAAAAAGTTACATTACACAGATTTGATCTCTCC----CTCTCTGGGTTTT-GATCAGAACAAAAAGTTACCCAAGTTAAGAATAAAAAGTTACCCAAGTTACATGT-TGCATAGCACAGCCAGATTGCTGGTAAAAA---CCAA--AGCTCAACTGACCTGTATTAAAAT--------GTATCACTTA------------TGCTTTTGTGTTCACTGGGAAAGAATCTAGGGA---C----ACAGG---TTTCAGGTGGTTTCACAGCTATTCTAAATCCGGATTCACACCTGTTC
i otoGar3.GL873530          I 1 C 0
s mm10.chr7                  81400101 401 + 145441459 AATCATAAATTCTAAT---------------TTCATATCCTTTCCTTTACTGC---------AAGTTAGCATTTACTGTCCTCTGAAAAG-AATAAATACAACATTCAAACAA-------ATTACACTCCAAA-ACAACTTAATTGCATTTC--------CT-----ATGTATAGATAATATTTAA------G-AC----T-GC---AGA--T---------------------------------ATATTATTTTAGATGCTCAGTTTAGTAT--------------------ACTGACTTTACTAAGCAG---------TTAC----TTCTCTGGACT--CAGTCAGAA--GA-----------------------AAGTTACTTCAGTTACTTTT-TGTTCAGAGCA-CCAAACTGCTGGAGGAAA---GAAA--A----GCTCAACCTACATAAAACT--------AAATCCTTTAGT-ACAAGTTTGGATTTTTAAGTTCATTAAGAAGGAAACTAAAGA---T----GCTGG---CTCAAACTGATTTCACAGCTATTCTAAGTGGGGAGTTATGCTTG-TA
i mm10.chr7                 I 4 C 0
s canFam3.chr3               54448663 436 +  91889043 GAGGATGAG-----AT---------------CAGGTGGCCTTTCCTTTACATTAA------TAAGCTGGTATTT----TCTTCTGCAAGG-TAAAA----AGTCAAAATAAAAATTTAAAAAAACCCTTTAAA---AATTTGACTACATTTTCCTAAGCACT-----TGGTTAAGA----TTTAAAGC-ATGGCACTGTTT-AT---ATAGAC---------------------------------CCTTACTTTTCAATC-TTAATTTCCTTT-----------TTAAAAAA-----GGCACATTAAATAAATCTGATCTCTCTCCTGCTCTTTGAATTTT-GGTCAGAATAAA-----------------------ACGTTATGTAAGTTACATTT-TGTGTAAAACAGAGGGATTGCTGGGAAAAAAACAGAA--A-TTGCACTGATGTGCCTACGAAT---------GAACACTTAAAGGTTAGTCCATACTTCCGTACTCACTGGGAAAGAATCAGAGGA---C----AGAGG---TTCAAGGTGGAGCCACAGCCATTCCAAACCTGAATTCGCACCTG---
i canFam3.chr3              I 5 C 0
s dasNov3.JH570731            1857695 477 +   3943991 GAGAATGAGGTA-------------------TCTGTGGTTTTCCCTTTACATCAATAAGTCTAAGTCAGTA-TTATTGTCCTCTGCAAGG-CAGAG---------------AA-------AGAATAGTCTTCAAAAGAGTTTATTACACTTTTCTAAATGCTAGATAACATTTAAAGCACTTTAAACTCCGGG-AATGTTT-AT---AGAGGTCCTAGTTTTGTTATTGTTGTTCTTCTTTGAGGACCCTAATTTTAAATG-TTATTTTCCTTA----------------AAA-------CACATTTGACAAATTAGATCTCTCC----CTCTCTGGGTTATCAGTCAAAACAAA-----------------------AAGCTACTGAAATAACATTT-TGCCCAGGCTAGCCAGAATACTGGTAAAAA---ACAAAGC-TTGAATT-ATTTGCACAAAAAAGATAATTTAGATAATTTAGAAGTTAATCTGTATTTTTATATTCCCAGGGAAAGAAACTAAGGAAAAT----ACAGGAGATTCAAGTTG-TTTCACAGCTATCCTAAATTTGGATATGCACCTT-CA
i dasNov3.JH570731          I 4 I 405

a score=113163.000000
s hg38.chr15_KI270850v1_alt    375852 14 +    430880 GTGCACATACACTC
s panTro5.chr15              63528945 14 +  83230942 GTGCACATACACTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80485901 14 +  99763055 GTGCACATACACTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        86181 14 -   1709092 GTGCACATACACTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17245632 14 - 121039945 GTGCACATATACTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60926351 14 + 169600520 ATGCACACACACTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108453099 14 - 171882078 ATGCACACACACTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        66508 14 -   2311642 ATGCACACACACTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        62005 14 -   1987038 ATGCACACACACTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21142679 14 -  24206276 ATGCACACACACTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        72976 14 -   1397330 ATGCACACACACTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        81004 14 -   1784207 ATGCACACACATTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22282383 14 + 158406734 ATGCATACACACTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50514460 14 +  54856640 AAGCACAAACACTC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       657811 14 -   2910086 acacacaaacacTC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40683915 14 +  42888418 GTGCACACACACTC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             675117  6 -  36342412 TTGCAT--------
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81400502  6 + 145441459 A-GCACA-------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54449099  9 +  91889043 -----CACACACAC
i canFam3.chr3              C 0 C 0
e dasNov3.JH570731            1858172 405 +   3943991 I

a score=2701446.000000
s hg38.chr15_KI270850v1_alt    375866 217 +    430880 CCCTCTAT-----ACTTAGCGACATGGAATTGCACAGGTGTGAATTCAAGACGATTACTATTCCTAGCCTTTG-TTAACATTTTAAAGAGTTAAAAGTTGCTAG-TAA-GGA-TGTCTGCTGCCCTAAGCCTGACTTATAGCATTTTCC--CCAAGGGATTT-TATTCATTAGGAACTAGATGACAATGAATTAACACACTACATAC----------------------------AACTT-TGCAAC-AGAGAAGGAAT
s panTro5.chr15              63528959 222 +  83230942 CCCTCTAT-----ACTTAGCGACATGGAATTGCACAGGTGTGAATTCAAGACGATTACTATTCCTAGCCTTTG-TTAACATTTTAAAGAGTTAAAAGTTGCTAG-TAA-GGA-TGTCTGCTGCCCTAAGCCTGACTTATAGCATTTTCC--CCAAGGGATTT-TATTCATTAGGAACTAGATGACAATGAATTAACACACTACATATC-----------------------TTTTAACTT-TGCAAC-AGAGAAGGAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80485915 222 +  99763055 CCCTCTAT-----ACTTAGCGACATGGAATTGCACAGGTGTGAATTCAAGACGATTACTATTCCTAGCCTTTG-TTAACATTTTAAAGAGTTAAAAGTTGCTAG-TAA-GGA-TGTCTGCTGCCCTAAGCCTGACTTATAGCATTTTCC--CCAAGGGATTT-TATTCATTAGGAACTAGATGACAATGAATTAACACACTACATATC-----------------------TTTTAACTT-TGCAAC-AGAGAAGGAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        86195 221 -   1709092 CCCTCTAT-----ACTCAGCGACATGGAATTGCACAGGTGTGAATTCAAGACGATTACTATTCCTAGCCTTTG-TTAACATTTTAAAGAGTTAAAAGTTGCTAG-TAA-GGA-TGTCTGCTGCCCTAAGCCTGACTTATAGCATCTTCC--CCAAGGGATTT-TATTCATTAGGAACTAGATGACAATGAATTAACACACTACATATC-----------------------TTT-AACTT-TGCAAC-AGGGAAAGAAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17245646 220 - 121039945 CCCTCTAT-----ACTTAGGGACATGGAATTGCACAGGTGTGAATTCAAGATGATTACTATTCCTAGCCTTTG-TTAACATTTTAAAGAGTT-AAAGTTGCTAG-TAA-GGA-TGTCTGCTGCCCTAAGCCTGACTTATAGCATTTTCC--CCAAAGGATTT-TATTCATTAGGATCTAGATGACAATGAATTAACACACTACATATC-----------------------TTT-AACTT-TGCAAC-AGGGAAGGAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60926365 220 + 169600520 CCCTCTAT-----ACTTAGGGACATGGAATTGCATAGGTGTGAATTCAAGATGATTACTATTCCTAGCCTTCT-TTAACATTTTAAAGAGTT-AAAGTTGCTAG-TAA-GGA-TGTCTGCTGCCCTAAGCCTGACTTATAGCATTTTCC--CCAAGGGATTT-TACTCATTAGGAACTAGATGATGATGAACCAACATACTACATATC-----------------------TTT-AACTT-CGCAAC-AGGGAAGGAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108453113 220 - 171882078 CCCTCTAT-----ACTTAGGGACATGGAATTGCATAGGTGTGAATTCAAGATGATTACTATTCCTAGCCTTCT-TTAACATTTTAAAGAGTT-AAAGTTGCTAG-TAA-GGA-TGTCTGCTGCCCTAAGCCTGACTTATAGCATTTTCC--CCAAGGGATTT-TATTCATTAGGAACTAGATGATGATGAACCAACATACTACATATC-----------------------TTT-AACTT-TGCAAC-AGGGAAGGAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        66522 220 -   2311642 CCCTCTAT-----ACTTAGGGACATGGAACTGCATAGGTGTGAATTCAAGATGATTACTATTCCTAGCCTTCT-TTAACATTTTAAAGAGTT-AAAGTTGCTAG-TAA-GGA-TGTCTGCTGCCCTAAGCCTGACTTATAGCATTTTCC--CCAAGGGATTT-TATTCATTAGGAACTAGATGATGATGAACCAACATACTACATATC-----------------------TTT-AACTT-TGCAAC-AGGGAAGGAAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        62019 220 -   1987038 CCCTCTAT-----ACTTCAGGACATGGAATTGCATAGGTGTGAATTCAAGATGATTACTATTCCTAGCCTTCG-TTAACATTTTAAAGAGTT-AAAGTTGCTAG-TAA-GGA-TGTCTGCTGCCCTAAGCCTGACTTACAGCATTTTCC--GCAAGGGATTT-TATTCATTAGGAACTAGATGATGATGAACCAACATACTACGTATC-----------------------TTT-AACTT-TGCAAC-AGGGAAGGAAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21142693 220 -  24206276 CCCTCTAT-----ACTTAGGGACATGGAATTGCATAGGTGTGAATTCAAGATGATTACCATTCCTAGCCTTCG-TTAACATTTTAAAGAGTT-AAAGTTGCTAG-TAA-GGA-TGTCTGCTGCCCTAAGCCTGACTTATAGCATTTTCC--CCAAAGGATTT-TATTCATTAGGAACTAGATGATGATGAACCAACATACTACATATC-----------------------TTT-AACTT-TGCAAC-AGGGAAGGAAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        72990 220 -   1397330 CCCTCTAT-----ACTTCGGGACATGGAATTGCATAGGTGTGAATTCAAGATGATTACTATTCCTAGCCTTCG-TCAACATTTTAAAGAGTT-AAAGTTGCTAG-TAA-GGA-TGTCTGCTGCCCTAAGCCTGACTTATAGCATTTTCC--GCAAGGGATTT-TATTCATTAGGAACTAGATGATGATGAACCAACATACTACGTATC-----------------------TTT-AACTT-TGCAAC-AGGGAAGGAAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        81018 220 -   1784207 CCCTCTAT-----ACTTAGGGACATGGAATTGCATAGGTGTGAATTCAAGATGATTACCATTCCTAGCCTTCG-TTAACATTTTAAAGAGTT-AAAGTTGCTAG-TAA-GGA-TGTCTGCTGCCCTAAGCCTGACTTACAGCACTTTCC--CCAAGGGATTT-TATTCATTAGGAACTAGATGATGATGAACCAACATACTACGTATC-----------------------TTT-AACTT-TGCAAC-AGGGAAGGAAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22282397 222 + 158406734 CCCTCTAT-----ACTTAGGCACATTGAATTGCACAGGTGTGAATTCAAGATGATTACTATTCCTAGCCTTCA-TTAACATTTTAAAGAGTT-AAAGTTGCTAG-TAA-GGA-TGTGTGCTGCCCTAAGCCTGGCTTAAAGCATTTTCC--CCAAGGGATTT-TATTCATTAGGAACTAGCTGACAATGAATTAACACACTACAGACCT---------------------TTTT-AACTT-TGCAAC-AGGGAAGGAAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50514474 220 +  54856640 CCCTCTAT-----ACTTAGGGACATTGAATTGCACAGGTGTAAATTCAAGATGATTACTATTCCTAGCCTTCA-TTAACATTTTAAAAAGTT-AAAGTTGCTAC-TAA-GGA-TGTGTGCTGCCCTAAGCCTGGCTTAAAGCATTTTCC--CCAAGGGATTT-TATTCATTAGGAACTAGTAGACAATGAATTAACACACTACAAACC-----------------------TTT-AACTT-TGCAAC-AAGGAAAGAAC
i saiBol1.JH378108          C 0 I 277
s cebCap1.NW_016107610v1       657825 225 -   2910086 CCCTCTATACTTAACTTAGGGACATTGAATTGCACAGGTGTGAATTCAAGACGATTACTATTCCTAGCCTTCA-TTAACATTTTAAAGAGTT-AAAGTTGCTAG-TAA-GGA-TGTGTGCTGCCCTAAGCCTGGCTTAAAGCATTTTCC--CCAAGGGATTT-TATTCATTAGGAACTAGTAGACAATGAATTAACACACTACAGACC-----------------------TTT-ATCTT-TGCAAC-AGGGAAGGAAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40683929 220 +  42888418 CCCTCTAT-----ACTTAGGGACATTGAATTGCACAGGTGTGAATTCAAGATGATTACTATTCCTAGCCTTCA-TTAACATTTTAAAGAGTT-AAAGTTGCTAG-TAA-GGA-TGTGTGCTGCCCTAAGCCTGGCTTAAAGCATTTTCC--CCAAGGGATTT-TATTCATTAGGAACTAGTTGACAATGAATTAACACACTACAGACC-----------------------TTT-AACTT-TGCAAC-AGGGAAGGAAC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             675123 223 -  36342412 --CTTTAT-----ATTTAGGAATAAAGAACTGCACAGGTGTGAATTCAAGAGTACTACTATTCCTAGCCATCA-TTAACATTTCAAAGAGTT-AAAGTTGCCAG-TAAGGGA-CATTTGCTGGCCTAACCCCCTTTTAAAGAATTTCCCCTCCAAGGGATTT-TATTCATTGGGAACTAGATCATAATGGATCAGAAAGCTATGTATCT-------------------TCTTTT-GACTT-TCTAAA-AGAAGAAGG--
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81400508 215 + 145441459 -CCTTTAT-----ACTTAGGGACA--GAACTATAAAAGTGTGAATTC---ACAATTATTATGCCTAGCCAGCA-TTAATGTTTTTAAAAGTT-CAATTTGTCAGTTAA-AGA-TGTATAGTTATATAAGCTGACTTTATAGCACTTTCC--CTGAG-----T-TATTTATTGGGAAGTAGATAAAAACTAGATTAAAAATTGCCTACCA-------------------TCTTTT-AATTTCTTCAAC-AATGGAGACAA
i mm10.chr7                 C 0 I 1
s canFam3.chr3               54449108 223 +  91889043 CTTCCAAT-----AC--AGAGACACGGAGCCACACAGGTGTG-ACTCAGGACAATTGTGATTCATGACCACCATTTAACATGTCCAAGAGTC-GAAACTGCCAG-TAA-AGAGTGTTTGCCAATTTAAGCCCATTTTAACACATTTTCC--TCATGGGATTT-TATTCA-AAGGAACTAGATAACAATGAATTAAAAAGCTACATATTT-------------------TCTTTT-AACTT-CACAACAAAGGAAGGAAT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1858577 236 +   3943991 CCCTTTAC-----ATACATGGATACAGAACT-CACAGGTGTGAATTCAAGAGGATTACTATTCCTAGCAATCA-TGAACATTTC---------AAAGATGCCTT-TAG-GGAATACTTGTCAGTCTAAGCTCATTTTAAAATATTTTCC--CCACAAATTTTATATGCATTAGGAACTAGATATCAATGAATTACAATGCTACAGGtttttttttttttttttttttttttttt-AACTT-TCTGTA-AAGAAAGGAAC
i dasNov3.JH570731          I 405 C 0

a score=4102741.000000
s hg38.chr15_KI270850v1_alt    376083 371 +    430880 TGCAATTGTC-TTTAAGACA-GTTTCA------------------ATAGTTGCCACCCCCTAGTTGTAAAAAAGA----TTATCAGGAAATTCAACATAG-GAAAAGATTTAAAAGACTAACAG---------------------------AAAAAAT-----AACTGTTCTACTTATAAAGAAAATGGGAATTAAAATGAGAATTCTGC-TTACCAAAACTG-AAAAATTACAGTTACAATATTCAATGGTGATGAGCCATTTAGGTAAT-TTTTTCTTCTCTATGTATATGGTGAGACAGG-A-CTCTCCAACTGCTGAGACAAT--CACAGAAGGACAGTATCTCCATCGAGAATTTAACCATCAAGAATTTTT-AAAGTATCAAAACT------CTTTAACTTGGTAACTGTATTA-TAAGAATCTCTC-----T----AAATACTCA
s panTro5.chr15              63529181 371 +  83230942 TGCAATTGTC-TTTAAGACA-GTTTCA------------------ATAGTTGCCACCCCCTAGTTGTAAAAAAGA----TTATCAGGAAATTCAACATAG-GAAAAGATTTAAAAGACTAACAG---------------------------AAAAAAT-----AACTGTTCTACTTATAAAGAAAATGGGAATTAAAATGAGAATTCTGC-TTACCAAAACTG-AAAAATTACAGTTACAATATTCAATGGTGATGAGCCATTTAGGTAAT-TTTTTCTTCTCTATGTATATGGTGAGACAGG-A-CTCTCCAACTGCTGAGAGAAT--CACAGAAGGACAGTATCTCCATCGAGAATTTAACCATCAAGAATTTTT-AAAATATCAAAACT------CTTTAACTTGGTAACTGTATTA-TAAGAATCTCTC-----T----AAATACTCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80486137 371 +  99763055 TGCAATTGTC-TTTAAGACA-GTTTCA------------------ATAGTTGCCACCCCCTAGTTGTAAAAAAGA----TTATCAGGAAATTCAACATAG-GAAAAGATTTAAAAGACTAACAG---------------------------AAAAAAT-----AACTGTTCTACTTATAAAGAAAATGGGAATTAAAATGAGAATTCTGC-TTACCAAAACTG-AAAAATTACAGTTACAATATTCAATGGTGATGAGCCATTTAGGTAAT-TTTTTCTTCTCTATGTATATGGTGAGACAGG-A-CTCTCCAACTGCTGAGAGAAT--CACAGAAGGACAGTATCTCCATCGAGAATTTAACCATCAAGAATTTTT-AAAATATCAAAACT------CTTTAACTTGGTAACTGTATTA-TAAGAATCTCTC-----T----AAATACTCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        86416 371 -   1709092 TGCAATTGTC-TTTAAGGCA-GTTTCA------------------ATAGTTGCCACCCCCTAGTTGTAAAAAAGA----TTATCAGGAAATTCAACATAG-GAAAAGATTTAAAAGACTAACAG---------------------------AAAAAAT-----AACTGTTCTACTTATAAAGAAAATGGGAATTAAAGTGAGAATTCTGC-TTACCAAAACTG-AAAAATTACAGTTACAATATTCAATGGTGATGAGCCATTTAGGTAAT-TTTTTCTTCTCTATGTATATGGTGAGACAGG-A-CTCTCCAACTGCTGAGAGAAT--CACAGAAGGACAGTATCTCCATCGAGAATTTAACCatcaagaattttt-aaaatatcaaaact------ctttaacttggtaactgtatta-taacaatctctc-----t----aaatactca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17245866 370 - 121039945 TGCAATTGTC-TTTAAGACA-GTTTCA------------------ATAGTTGCC-CCCCCCAGTTGTAAAAAAGA----TTATCAGGAAATTCAACATAG-GAAAAGATTTAAAAGACTAATAG---------------------------AAAAAAT-----AACTGTTCTACTTATAAAGAAAATGGGAATTAAAATGAGAATTCTGC-TTACCAAACCTG-AAAAATTACAGTTACAATATTCAATGGTGATGAGCCATTTAGGTAAT-TTTTTCTTCTCTATGTATATGGTGAGACAGG-A-CTCTTCAACTGCTGAGAGAAT--CACAGAAGGATAGTATCTCCATCAAGAATTTAACCATCAAGAATTTTT-AAAATATCAAAACT------CTTCAACTTGGTAACTGTATTA-TAAGAATCTCTC-----T----AAATACTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60926585 369 + 169600520 TGCAATTGTC-TTTAAGACA-GTTTCA------------------ATAGTTGCTATCCTCTAGTTGTAAAAAAGA----TTATCAGGAAATTCAATATAG-GAAAAGATTTAAAAGACTAACAG---------------------------AAAAAAT-----AACTGTTCTGCTTATAACGAAAATGGGAAT----ATGAGAATTCTGC-TTACCAAACCTG-AAAAATTACAGTTACAATATTCAATGGTGATAAGCCATTTAGGTAAT-TTTTTCTTCTCTATGTATATGGTTAGACAGG-A-CTCTCCAACTGCTGAGAGAATCACACAGAAGGATAGTATCTCCACCAAGAATGCAACCatcaagaatttta-acaatatcaaaact------cttcaacttggtaactgtatta-taagaatctctc-----t----aaatactca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108453333 369 - 171882078 TGCAATTGTC-TTTAAGACA-GTTTCA------------------ATAGTTGCTATCCTCTAGTTGTAAAAAAGA----TTATCAGGAAATTCAATATAG-GAAAAGATTTAAAAGACTAACAG---------------------------AAAAAAT-----AACTGTTCTGCTTATAACGAAAATGGGAAT----ATGAGAATTCTGC-TTACCAAACCTG-AAAAATTACAGTTACAATATTCAATGGTGATGAGCCATTTAGGTAAT-TTTTTCTTCTCTATGTATATGGTTAGACAGG-A-CTCTCCAACTGCTGAGAGAATCACACAGAAGGATAGTATCTCCACCAAGAATGCAACCatcaagaatttta-acaatatcaaaact------cttcaacttggtaactgtatta-taagaatctctc-----t----aaatactca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        66742 369 -   2311642 TGCAATTGTC-TTTAAGACA-GTTTCA------------------ATAGTTGCTATCCTCTAGTTGTAAAAAAGA----TTATCAGGAAATTCAATATAG-GAAAAGATTTAAAAGACTAACAG---------------------------AAAAAAT-----AACTGTTCTGCTTATAACGAAAATGGGAAT----ATGAGAATTCTGC-TTACCAAACCTG-AAAAATTACAGTTACAATATTCAATGGTGATGAGCCATTTAGGTAAT-TTTTTCTTCTCTATGTATATGGTTAGACAGG-A-CTCTCCAACTGCTGAGAGAATCACACAGAAGGAGAGTATCTCCACCAAGAATGCAACCatcaagaatttta-acaatatcaaaact------cttcaacttggtaactgtatta-taagaatctctc-----t----aaatactca
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        62239 369 -   1987038 TGCAATTGTC-TTTAAGACA-GTTTCA------------------ATAGTTGCTATCCTCTAGCTGTGAAAAAGA----TTATCAGGAAATTTAATATAG-GAAAAGATTTAAAAGACTAATAG---------------------------AAAAAAT-----AACTGTTCTGCTTATAACAAAAATGGGAAT----ATGAGAATTCTGC-TTACCAAACCTG-AAAAATTACAGTTACAATATTCAATGGTGATGAGCCATTTAGGTAAT-TTTTTCTTCTCTATGTATATGGTTAGACAGG-A-CTCTCCAACTGCTGAGAGAATCACACAGAAGGATAGTATCTCCATCAAGAATGCAACCatcaagaatttta-acaatatcaaaact------cttcaacttggtaactgtatta-taagaatctctc-----t----aaatactca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21142913 369 -  24206276 TGCAATTGTC-TTTAAGACA-GTTTCA------------------ATAGTTGCTATCCTCTAGTTGTAAAAAAGA----TTATCAGGAAATTCAATATAG-GAAAAGATTTAAAAGACTAATAG---------------------------AAAAAAT-----AACTGTTCTGCTTATAACGAAAATGGGAAT----ATGAGAATTCTGC-TTACCAAACCTG-AAAAATTACAGTTACAATATTCAATGGTGATGAGCCATTTAGGTAAT-TTTTTCTTCTCTATGTATATGGTTAGACAGG-A-CTCTCCAACTGCTGAGAGAATCACACAGAAGGATAGTATCTCCATCAAGAATGCAACCatcaagaatttta-acaatatcaaaact------cttcaacttggtaactgtatta-taagaatctctc-----t----aaatactca
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        73210 369 -   1397330 TGCAATTGTC-TTTAAGACA-GTTTCA------------------ATAGTTGCTATCCTCTAGTTGTAAAAAAGA----TTATCAGGAAATTCAATATAG-GAAAAGATTTAAAAGACTAATAG---------------------------AAAAAAT-----AACTGTTCTGCTTATAACAAAAATGGGAAT----ATGAGAATTCTGC-TTACCAAACCTG-AAAAATTACAGTTACAATATTCAATGGTGATGAGCCATTTAGGTAAT-TTTTTCTTCTCTATGTATATGGTTAGACAGG-A-CTCTCCAACTGCTGAGCGAATCACACAGAAGGATAGTATCTCCATCAAGAATGCAACCatcaagaatttta-acaatatcaaaact------cttcaacttggtaactgtatta-taagaatctctc-----t----aaatactca
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        81238 369 -   1784207 TGCAATTGTC-TTTAAGACA-GTTTCA------------------ATAGTTGCTATCCCCTAGTTGTAAAAAAGA----TTATCAGGAAATTCAATACAG-GAAAAGATTTAAAAGACTAATAG---------------------------AAAAAAT-----AACCGTTCTGCTAATAACGAAAATGGGAAT----ATGAGAATTCTGC-TTACCAAACCTG-AAAAATTACAGTTACAATATTCAATGGTGATGAGCCATTTAGGTAAT-TTTTTCTTCTCTATGTATATGGTTAGACAGG-A-CTCTCCAACTGCTGAGAGAATCACACAGAAGGATAGTATCTCCATCAAGAATGTAACCatcaagaatttta-aaaatatcaaaact------cttcaacttggtaactgtatta-taagaatctctc-----t----aaatactca
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22282619 357 + 158406734 TGCAATTGTC-TTTAAGACA-GTTTCA------------------ACAGTTTCCACCCCCTAGTTGTGAGAAAGA-----TATCAGGAAATTCAACACAGTAAAAAGATTTAAAAGACTAATAG---------------------------AAAAAGT-----AATTATTCTACTTATAAAGAAAATGGGAATTCAAATGAGAATTCTGC-TTACCAAACCTG-AAAAATTACAGTTACAATATTCAATGGCGAAGAGTCACTTTGGTAATTTTTTTCTTCTCTATGTATATGGTGAGACAGG-A-CCCTTCAACTGCTGAGGGAAC--AACAGAAGGATAGTATC---------------TCCATCAAGAATTTTT-AAAATATCAAAACT------CTTCAAGTTGGTAATGGTATTA-TAAGAATCTCTC-----T----AAACACTCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50514971 360 +  54856640 TGCAATTGTCTTTTAAGACA-GTTTCA--------------------AGTTTCCACCCCGTAGCTGTGAGaaaga-----tatcaggaaattcaaaatagtaaaaagatttaaaagactaacag---------------------------aaaaagt-----aattattctacttataaagaaaatggaaattaaaatgagaattctgc-ttaccaaacctg-aaaaattacagttacaatattcaacgg-----------tatggtaatctttttcttctctatgtatatggtaaggcagg-a-ctctccaactgctgagggaac--aacagaaggatagtatccctgtcaagaattcacccgtcaagaattttt-aaaatataaaaact------cttcaagttggtaattctatta-taagaatctctc-----t----aaaaactca
i saiBol1.JH378108          I 277 C 0
s cebCap1.NW_016107610v1       658050 357 -   2910086 TGCAATTGTC-TTTAAGACA-GTGTCA------------------ACAGTTTCCACCCCCTAGTTGTTAGAAAGA-----TATCAGGAAATTCAACATAATAAAAAGATTTAAAAGACTAATAG---------------------------AAAAAGT-----AATTCTTCTACttataaagaaaatggaaattaaaatgaaaattCTGC-TTACCAAACCTG-AAAAATTACAGTTACAATATTCAATGGCGATGAGTCCTTTTGGTAATTTTTTTCTTCTCTATGTATATGGTGCGACAGG-A-CTCTCCAACTGCTGATGGAAC--AACAGAAGGATAGTATC---------------CCtgtcaagaatttaa-aaaatatcaaaact------cttcaaattggtaattgtatta-taagaatctctc-----t----aaatactca
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40684149 376 +  42888418 TACAATTGTC-TTTAAGACA-GTTTCA------------------ACAGTTTCCACCCCCTGGTTGTGAGAAAGA-----TATCAGGAAATTCAACATAGTAAAAAGATTTAAAAGACTAATAG---------------------------AAAAAGT-----AATTCTTCTACTTATAAAGAAAATGGGAATTAAAATGAGAATTCTGA-TTACCAAACCTG-AAAAATTACAGTTACAATATTCAATGGCGATGAGTCATTTTGGTAATTTTTTTCTTCTCTATGTAtatggtgagacagg-a-ctctccaactgctgagggaac--aacagaaggatagtatctctgtcaagaatttaaccatcaagaatttta-aaaatatcaaaact------cttcaagttggtaattgtatta-taagaatctctc-----tagagaaatactca
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             675346 352 -  36342412 ---AATTATC-TTAAAAGCA-GTTTGACTTTTCACTGTGCCTGGCAGAGTTTCCATCCCA-----ATAAGAAAAA-----CAGCAGGAAATTCAACATAG-GAAAAGATTAAAAAGACTAACAG---------------------------AAAAA-------AAGTGTTCGATTTATAAAGGAAACAAGAATTAAAATGGGAAGTCTGC-TCACCAAATCAGAAAAAATTAAAGTTATAATATTCAATGGAAATCAATCATTTTGATAAT---TTTCTTCTCAGTGTATATGGTGAGACAG------------CTGCTGAAGGGCT--TATAGAAGGACAGCATCTTCATAA-----------atcaagagttttataaaatatcacaact------atccaacccagtaattat-------aaaatctcta---agt----caatgttc-
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81400724 343 + 145441459 CACAACTCTC-TTTAAGGCATGTTTTA------------------G--------ATATCCTGGTAGT-------------TTCC------TGTGCCACGG-GAAAAGATTAAAAACACAAATAGCTTT----------------------TAAAAGGT--------TGTTCCACTTATTAAGGAGATAGGAATAAAAATGAGAATTTTACTTTACCAAGCTGT-GAAAATTATAGTTACAACATTCAGTGGTGACAAGTCATTTTGATAAT---CTTCTTTACTA-GTGTA-GGTGAGGCAGC-A-CTGTCAAACTGTACAAGGGA---CAAGAAGGGACAGCATTTCCAT----------ACATGCAAGGGTTTTA-AAACTTTTGTAACTGCTTAACCTAAACTTAGTACTTTCAGTA-CTATAATCTCTT-----G----CAGGGCTCA
i mm10.chr7                 I 1 I 2019
s canFam3.chr3               54449331 408 +  91889043 CACAGTGGTC-TTTCAGGCA-GTTTGGTTTTCCAGAGTGCCTGGTGGAGTTTCCAGTCAA-AGAGAAAAAGAAGG----TCAGTAGGAAATTCAACA-GG-GAAAAGAT--AAAAGGCCAACACTGTTGttttatttttttttttttaaaCAAAAAACCCCCAACTTGTTCCACTT-TAAAACAAATGGGAATTCAACTTAGAATTCTGC-TTACCAAATCAG-AAAAATTACAGGTATAATATGCAGTGGTGAGGCGTCATTTCACTAAT---TTTCTTCTCTGCATAATACATAAGACAAG-CTCTCTCAAATTGCTGGAGGGAC--CATAAAAAGATAGCATTTCCATAA--------ATCataaggagctt---aaaaaattaaaact------gttcaacttagtgattgtattgctaagaatctcta---agt----aaatactca
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1858813 344 +   3943991 CGCAGTTGTC-TTTAAGGCA-GTTTGA---------------------TTTTCTACCTC--AGTAGAAAAAAAGAAGAGTTagca-gaaattcaagatgg-gggaaa------------aatat---------------------------ttaaaat-----atttgtttcactta-----aaaatgggaattaaaatgagaattctat-ttatcaaatcag-caaaatctaaattataatattcaatgctgat----catttttattat---ttttttctttacatgtacagtgagataagca-ctctcaaactgctggagggcc--aattaagcaatgctttttccataa--------atatttaagagtctaa-aaattattaataca------gct-gacccagtaattttattgctaaggatatctccaaagt----aaatactcc
i dasNov3.JH570731          C 0 C 0

a score=943088.000000
s hg38.chr15_KI270850v1_alt    376454 89 +    430880 TAAATGCTAAGAAAGATTTACCTACAAAGATGCCTGTCACAATGCA---------ATCAATTGCGAAA-A-CTGAAAATAACTA-TTCTG----TCAAAATGGAC
s panTro5.chr15              63529552 89 +  83230942 TAAATGCTAAGAAAGATTTACCTACAAAGATGCCTGTCACAATGCA---------ATCAATTGCGAAA-A-CTGAAAATAACTA-TTCTG----TCAAAATGGAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80486508 89 +  99763055 TAAATGCTAAGAAAGATTTACCTACAAAGATGCCTGTCACAATGCA---------ATCAATTGCGAAA-A-CTGAAAATAACTA-TTCTG----TCAAAATGGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        86787 89 -   1709092 taaatgctaagaaagatttacctacaaagatgcctgtcacaatgca---------atcaattgcgaaa-a-ctgaaaataaccA-TTCTG----TCAAAATGGAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17246236 89 - 121039945 TAAATGCTAAGAAAGATTTACCTACAAAGATGCCTGTCAGAATGCA---------ATCAATTGTGAAA-A-CTGAAAATAACTA-TTCTG----TCAAAATGGAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60926954 89 + 169600520 taaacgttaggaaagatttacttacaaagatgcctgtcacaatgca---------atcaattgtgaaa-a-ctgaaaataacTA-TTCTG----TCAAAATGGAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108453702 89 - 171882078 taaacgttaggaaagatttacttacaaagatgcctgtcacaatgca---------atcaattgtgaaa-a-ctgaaaataacTA-TTCTG----TCAAAATGGAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        67111 89 -   2311642 taaacgttaggaaagatttacttacaaagatgcctgtcacaatgca---------atcaattgtgaaa-a-ctgaaaataacTA-TTCTG----TCAAAATGGAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        62608 89 -   1987038 taaatgttaggaaagatttacttacaaagatgcctgtcacaATGCA---------ATCAATTGTGAAA-A-CTGAAAATAACTA-TTCTG----TCAAAATGGAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21143282 89 -  24206276 taaatgttaggaaagatttacttacaaagatgcctgtcacaatgca---------atcaattgtgaaa-a-ctgaaaataacTA-TTCTG----TCAAAATGGAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        73579 89 -   1397330 taaatgttaggaaagatttacttacaaagatgcctgtcacaATGCA---------ATCAATTGTGAAA-A-CTGAAAATAACTA-TTCTG----TCAAAATGGAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        81607 89 -   1784207 taaatgttaggaaagatttacttacaaagatgcctgtcacaATGTA---------ATCAATTGTGAAA-A-CTGAAAATAACTA-TTCTG----TCAAAATGGAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22282976 76 + 158406734 TAAATGCTAAGAAAGATTTACCTACAAAGATGCTGGTCACAATGCA---------ATCAATTGTAAAA---------------A-TTCCC----TCAAAATGGAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50515331 76 +  54856640 taaatgctaagaaatatttacctacaaagatacctatcacaATGCA---------ATCAACTGTAAAA---------------A-TTCCC----TCAAAATGGAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       658407 76 -   2910086 aaaatgctaagaaagatttacctacaaagatgcctgtcacaATGCA---------ATGAATTGTAAAA---------------A-TTCCC----TCAAAATGGAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40684525 76 +  42888418 taaatgctaagaaagatttacctacaaagatgcctgtcacaATGCA---------ATCAATTGTAAAA---------------A-TTCCC----TCAAAATGGAC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             675698 90 -  36342412 -aaatgctaagaaagatttacatataaagatatttgtcacaaggct---------atcaattctgaaaaa-ctggaaataacTATTTCTT----TCAAAATGGAT
i otoGar3.GL873530          C 0 I 262
s canFam3.chr3               54449739 91 +  91889043 taaaggcagagaaatgcctacctataaagatgtttgtgacaaagct---------attaatgttgaga-agctgaaaataacTA-TTTCGCTCATTAAGAGG---
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1859157 99 +   3943991 tcactgcagagaaaaattaacctatcaaggtatttgtcactattaatgataaaacactattgataaaa-a-ctggaaataactatttccc----ttataatgggg
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I

a score=945830.000000
s hg38.chr15_KI270850v1_alt    376543 78 +    430880 TACGAACTTAGCCATTAAAATACATACCTCAGCATATGACAAAGGA-------------GAACACTTAAG--TGGCTGGGGAAAGAGAGTAAG
s panTro5.chr15              63529641 78 +  83230942 TACGAACTTAGCCATTAAAATACATACCTCAGCATATGACAAAGGA-------------GAACACTTAAG--TGGTTGGGGAAAGAGAGTAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80486597 78 +  99763055 TACGAACTTAGCCATTAAAATACATACCTCAGCATATGACAAAGGA-------------GAACACTTAAG--TGGTTGGGGAAAGAGAGTAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        86876 78 -   1709092 TACGAACTTAGCCATTAAAATACATACCTCAGCATATGACAAAGGA-------------GAACACTTAAG--TGGTTGGGGAAAGAGAATAAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17246325 78 - 121039945 TACCAACTTAGCTATTAAAATGCATACCTCAGCATACGACAAAGGA-------------ATATACTTAAG--TGGTTGGGGAAAGAGAGTAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60927043 78 + 169600520 TACGAACTTAGCCATTAAAATATATACCTCAGCATACGACAAAGGA-------------GAATACTTAAG--TGGTTGAGGAAAGAAAGAAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108453791 78 - 171882078 TACGAACTTAGCCATTAAAATATATACCTCAGCATACGACAAAGGA-------------GAATACTTAAG--TGGTTGAGGAAAGAAAGAAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        67200 78 -   2311642 TACGAACTTAGCCATTAAAATATATACCTCAGCATACGACAAAGGA-------------GAATACTTAAG--TGGTTGAGGAAAGAAAGAAAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        62697 78 -   1987038 TACGAACTTAGCCATTAAAATATATACCTCAGCATACGACAAAGGA-------------GAATACTTAAG--TGGTTGAGGAAAGAAAGAAAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21143371 91 -  24206276 TACGAACTTAGCCATTAAAATATATACCTCAGCATACGACAAAGGAGAATACTTAAGTGGAATACTTAAG--TGGTTGAGGAAAGAAAGTAAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        73668 78 -   1397330 TACGAACTTAGCCATTAAAATATATACCTCAGCATACGACAAAGGA-------------GAATACTTAAG--TGGTTGAGGAAAGAAAGAAAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        81696 78 -   1784207 TACGAACTTAGCCATTAAAATATACACCTCAGCATACGACAAAGGA-------------GAATACTTAAG--TGGTTGAGGAAAGAAAGTAAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22283052 77 + 158406734 TACAAACTTAGCCATTGAAATACGTACCTCAGCATACGACGAAGGA-------------GAATGC-TAAG--TGGTTGGGGAAAGAGAGTAAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50515407 77 +  54856640 TCCAAACTTAGCCATTAAAATACATACCTCAGCATATGACAAAGGA-------------GAATGC-TAAG--TGGTTGGGGAAAGAGAGTAAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       658483 77 -   2910086 TACAAACTTAGCCATTAAAATACATATCTCAGCATATGACAAAGCA-------------GAATGC-TAAG--TGGTTGGGGAAAAAAAATAAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40684601 77 +  42888418 TACAAACTTAGCCATTAAAATACATACCTCAGCATACGACAAAGGA-------------GAATGC-TAAG--TGGTTGGGGAAAGAGAGTAAG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             676050 78 -  36342412 TATGAACGTGGTCGTTAACATATGTATCTCAGCATATAACAAAGGA-------------GAATACTTAAAACTGGTTGGGGAAAG--AGTAAC
i otoGar3.GL873530          I 262 C 0
s canFam3.chr3               54449830 78 +  91889043 CAGGAACTTAGCCATTAATATCCCTGGTTCCACACATGATAGAGGA-------------GAATGCTTAAG--TGGCTAGGGAGGGAGAATAAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1859256 77 +   3943991 -TAGAACTAAGCCATTAAAATTTACATCTCAGTACATGACAAAGAA-------------AAATGCTTAAG--TGGCTGGGGAGATACAGAAAG
i dasNov3.JH570731          C 0 I 43819
e mm10.chr7                  81401067 2019 + 145441459 I

a score=732604.000000
s hg38.chr15_KI270850v1_alt    376621 81 +    430880 T----TGTATA-----CAAGACGACAGCTGCATGAAGATATTCAGAAATACGGAG---AGAACTCAAAGTCATCAAAAACAACTGAAGTAGAC
s panTro5.chr15              63529719 81 +  83230942 T----TGTATA-----CAAGACGACAGCTGCATGAAGATATTCAGAAATACGGAG---AGAACTCAAAGTCATCAAAAACAACTAAAGTAGAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80486675 81 +  99763055 T----TGTATA-----CAAGACGACAGCTGCATGAAGATATTCAGAAATACGGAG---AGAACTCAAAGTCATCAAAAACAACTGAAGTAGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        86954 81 -   1709092 T----TGTATA-----CAAGACTACAGCTGCATGAAGATATTCAGAAATACGGAG---AGAACTCAAAGTCATCAAAAACAACTTAAGTAGAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17246403 86 - 121039945 T----TCTATACAAGGCAAGACTACAGCTGCATGAAGATATTCAGAAATATGGAG---AGAACTCAAAGTCATCAAAAACAACTGAAGTAGAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60927121 83 + 169600520 T----CGTATA-AAGGCAAGACTACAGCTGCATGAAGATATTCAGAAATACGGAC---AGAACTCAAAG--ATCAAAAACAACTGAAGTAGAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108453869 83 - 171882078 T----CGTATA-AAGGCAAGACTACAGCTGCATGAAGATATTCAGAAATACGGAC---AGAACTCAAAG--ATCAAAAACAACTGAAGTAGAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        67278 83 -   2311642 T----CGTATA-AAGGCAAGACTACAGCTGCATGAAGACATTCAGAAATACGGAC---AGAACTCAAAG--ATCAAAAACAACTGAAGTAGAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        62775 83 -   1987038 T----CGTATA-AAGGCAAGACTACAGCTGCATGAAGATATTCAGAAATACGGAC---AGAACTCAAAG--ATCAAAAACAACTGAAGTAGAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21143462 83 -  24206276 T----TGTATA-AAGGCAAGACTACAGCTGCATGAAGATATTCAGAAATACGGAC---AGAACTCAAAG--ATCAAAAACAACTGAAGCAGAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        73746 83 -   1397330 T----CGTATA-AAGGCAAGACTACAGCTGCATGAAGATATTCAGAAATACGGAC---AGAACTCAAAG--ATCAAAAACAACTGAAGTAGAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        81774 83 -   1784207 T----TGTATA-AAGGCAATACTACAGCTGCATGAAGATATTCAGAAATACGGAC---AGAACTCAAAG--ACCAAAAACAACTGAAGTAGAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22283129 91 + 158406734 CTGTATGTATATAAGGCAAGATTGCAGCTGCATGAAGGTATTAAAAAATATGGAA--AAGAACTGAAAGTCATCAAAAACAACTGAAGCAGAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50515484 84 +  54856640 T----TGTATATAAGGCAAAATTACAGCTGCACGAAGGTATTAAGAAATATGGAG--AAAAACTGAAAGTCATCAAAAACAATTGAATAA---
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       658560 87 -   2910086 T----TGTATATAAGGCAAGATTACCACTGCATGAAGGTATTAAGAAATATGGAG--AAGAACTGAAAGTCACCAAAAACAACTGAAGTAGAC
i cebCap1.NW_016107610v1    C 0 I 382
s aotNan1.NW_018505940v1     40684678 84 +  42888418 T----TGTATATAAGGCAAGATTACAGCTGCATGAAGGTATTAAGAAATATGG-----AGAACTGAAAGTCATCAAAAACAACTGAAGTAGAC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             676128 58 -  36342412 T----TGTATGGAAAGCATGATTACAA-------------------------------AGGGATGAAAGCCATCAAGAACAACTACAGTGGAC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54449908 85 +  91889043 C----CATGAA--AAGCAGGATTACAACT-CATGAAAATTTCCACAAGTACACATAAAAGGACCAACAGTCTTCCA-AATGACCAAAGTAGAC
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I

a score=307804.000000
s hg38.chr15_KI270850v1_alt    376702 45 +    430880 TACAGGTAGTAGCACGTA-TGAATCTTTACTGAAATTTTCAAATTG
s panTro5.chr15              63529800 45 +  83230942 TACAGGTAGTAGCACGTA-TAAATCTTTACTGAAATTTTCAAATTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80486756 45 +  99763055 TACAGGTAGTAGCACGTA-TAAATCTTTACTGAAATTTTCAAATTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        87035 44 -   1709092 TACA-GTAGTAGCACGTA-TAAATCTTTACTGAAATTTTCAAATTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17246489 45 - 121039945 TACAGGTAGTAGCACGTA-TAAATCTTTACTGAAATTTTCAAATTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60927204 45 + 169600520 TACAGGTAGCAGCACATA-CAAATCTTTACTAAAATTTTCAAATTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108453952 45 - 171882078 TACAGGTAGCAGCACATA-TAAATCTTTACTAAAATTTTCAAATTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        67361 45 -   2311642 TACAGGTAGCAGCACATA-TAAATCTTTACTAAAATTTTCAAATTG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        62858 45 -   1987038 TACAGGTAGCAGCACATA-CAAATCTTTACTAAAATTTTCAAATTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21143545 45 -  24206276 TACAGGTAGCAGCACGTA-TAAATCTTTACTAAAATTTTCAAATTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        73829 45 -   1397330 TACAGGTAGCAGCACATA-TAAATCTTTACTAAAATTTTCAAATTG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        81857 45 -   1784207 TATAGGTAGCAGCACGTA-TAAATCTTTACTGAAATTTTCAAATTG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22283220 34 + 158406734 -------AGTGGCATGTA-TAA----CTAATGGCATTTTAAATTTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50515568 29 +  54856640 -----------GCACGTA-TAA----CTAATGGCA-TTAAAAAATT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40684762 34 +  42888418 -------AGTAGGATGTA-TAA----CTAATGGCATTTAAAAATTT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             676186 46 -  36342412 TACAGGGAGTTGGATGTATTAAATCTTCCCTGAAATCTTAAAAAGT
i otoGar3.GL873530          C 0 I 1
s canFam3.chr3               54449993 45 +  91889043 TACAGGTAGGAGGATGTA-TAAATTGGTACTGCATTTTCGAAATCA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e cebCap1.NW_016107610v1       658647 382 -   2910086 I

a score=2341579.000000
s hg38.chr15_KI270850v1_alt    376747 233 +    430880 TTTATAGCAAATGTAAACTACTC---AAAA--AAATTCAGATAA----TTTTAAGAAATTAAAATCTAGGTATGGCTCTCTGACAGAGAAATTCACAATATATATTTAAAATAGTATATTTAAAGAAAGATGAGCTGTC-----CTAAG----AAAATAATTCAGTAAAAAACCTTTCTGGGATGCTATCTGGTCATATGTTTTAAGAGTATGTTTATACCTAAGTACAAACATTGAGAAGTAGTTCAGTA
s panTro5.chr15              63529845 235 +  83230942 TTTATAGCAAATGTAAACTACTCA-GAAAA--AAATTCAGATAA----TTTTAAGAAATTAAAATCTGGGTATGGCTCTCTGACAGAGAAATTCACAATATATATTTAAAATAGTATATTTAAAGAAAGATGAGCTGTC-----TTAAG----AAAATAATTCAGTAAAAAACCTTTCTGGGATGCTATCTGGTCATACGTTTTAAGAGTATGTTTATACCTAAGTACAAACATTGAGAAGTAGTTCAGTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80486801 235 +  99763055 TTTATAGCAAATGTAAACTACTCA-GAAAA--AAATTCAGATAA----TTTTAAGAAATTAAAATCTGGGTATGGCTCTCTGACAGAGAAATTCACAATATATATTTAAAATAGTATATTTAAAGAAAGATGAGCTGTC-----TTAAG----AAAATAATTCAGTAAAAAACCTTTCTGGGATGCTATCTGGTCATACGTTTTAAGAGTATGTTTATACCTAAGTACAAACATTGAGAAGTAGTTCAGTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        87079 235 -   1709092 TTTATAGCAAATGTAAACTACTCA-GAAAA--AAATTCAGATAA----TTTTAAGAAATTAAAATCTGGGTATGGCTCTCTGACAGAGAAATTCACAATATATATTTAAAATAGTATATTTAAAGAAAGATGAGCTGTC-----TTAAG----AAAATAATTCAGTAAAAAACCTTTCTGGGATGCTATCTGGTCATATGTTTTAAGAGTATGTTTATACCTAAGTACAAACATTGAGAAGTAGTTCAGTA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17246534 234 - 121039945 TTTATAGCAAATGTAAACTACTCA--GAAA--AAATTCAGGTAA----TTTTAAGAAATTAAAATCTGGGTATGGCTCTGTGACAAAGAAATTCACAATATATATTTAAAATAGTACATTTAAAGAAAGATGAGCTGTC-----TTAAG----AAAATAATTCAGTAAAAAACCTTTCTGGGATGCTATTTGGTCATATGTTTTAAGAGTATGTTTATACCTAAGTACAAACATTCAGAAGTAGTTCAGTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60927249 239 + 169600520 TTTATAGCAAATGTAAACTACTC--AAAAA--ATATTCAGATAA----TTTTAAGAAATTATAATCTGGGTATGGCTCTCTGACAAAAGAATTCACAACATATATTTCAAAAAGTACATTTAAAGAAAGATGAGCTGTCTTCTTTTAAG----AAAATAATTCAGTAAAAAACTTTTCTGGGATGCTATTTGGTCATATGTTTTAAGAGTACGTTTATACCTAAGTACAAACATTCAGAAGTAGTTTAGTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108453997 239 - 171882078 TTTATAGCAAATGTAAACTACTC--AAAAA--ATATTCAGATAA----TTTTAAGAAATTATAATCTGGGTATGGCTCTCTGACAAAAGAATTCACAATATATATTTCAAAAAGTACATTTAAAGAAAGATGAGCTGTCTTCTTTTAAG----AAAATAATTCAGTAAAAAACTTTTCTGGGATGCTATTTGGTCATATGTTTTAAGAGTACGTTTATACCTAAGTACAAACATTCAGAAGTAGTTTAGTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        67406 239 -   2311642 TTTATAGCAAATGTAAACTACTC--AAAAA--ATATTCAGATAA----TTTTAAGAAATTATAATCTGGGTATGGCTCTCTGACAAAAGAATTCACAATATATATTTCAAAAAGTACATTTAAAGAAAGATGAGCTGTCTTCTTTTAAG----AAAATAATTCAGTAAAAAACTTTTCTGGGATGCTATTTGGTCATATGTTTTAAGAGTACGTTTATACCTAAGTACAAACATTCAGAAGTAGTTTAGTA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        62903 240 -   1987038 TTTATAGCAAATGTAAACTACTCA-AAAAA--ATATTCAGATAA----TTTTAAGAAATTATAATCTGGGTATGGCTCTCTGACAAAAGAATTCACAATATATATTTCAAAAAGTACATTTAAAGAAAGATGAGCTGTCTTCTTTTAAG----AAAATAATTCAGTAAAAAACTTTTCTGGGATGCTATTTGGTCATATGTTTTAAGAGTACGTTTATACCTAAGTACAAACATTCAGAAGTAGTTTAGTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21143590 239 -  24206276 TTTATAGCAAATGTAAACTACTC--AAAAA--ATATTCAGATAA----TTTTAAGAAATTATAATCTGGGTATGGCTCTCTGACAAAGGAATTCACAATATATATTTCAAAAAGTACATTTAAAGAAAGATGAGCTGTCTTCTTTTAAG----AAAATAATTCAGTAAAAAACTTTTCTGGGATGCTATTTGGTCGTATATTTTAAGAGTACGTTTATACCTAAGTACAAACATTCAGAAGTACTTTAGTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        73874 240 -   1397330 TTTATAGCAAATGTAAACTACTCA-AAAAA--ATATTCAGATAA----TTTTAAGAAATTATAATCTGGGTATGGCTCTCTGACAAAAGAATTCACAATATATATTTCAAAAAGTACATTTAAAGAAAGATGAGCTGTCTTCTTTTAAG----AAAATAATTCAGTAAAAAACTTTTCTGGGATGCTATTTGGTCATATGTTTTAAGAGTACGTTTATACCTAAGTACAAACATTCAGAAGTAGTTTAGTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        81902 240 -   1784207 TTTATAGCGAATGTAAACTACTCA-GAAAA--ATATTCAGATAA----TTTTAAGAAATTATAATCTGGGTATGGCTCTCTGACAAAGGAATTCACAATATATATTTTAAAATGTACATTTAAAGAAAGATGAGCTGTCTTCTTTTAAG----AAAATAATTCATTAAAAATCTTTTCTGGGATGCTATTTGGTCATATGTTTTAAGAGTACGTTTATACCTAAGTACAAACATTCAGAAGTAGTTTAGTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22283254 229 + 158406734 TTTACAGCAAATATAAACTACTC--AAAAA--AATTTCAGATAA-----TTTAAGAAATTAAAATCTGGATATGGC----TGACAAAGGAATTCACAATATATACTTAAAGTAGTACATGT----AAAGAAAGACGGGC-TATCTTAAG----AAAATAATTCAGTAAAAAACTTTTCTGGGATGTTATGTGGTCATATGTTTTAAGAGTATGTTTATACCTAAGTACAAACATTCGAAAGTAGTTCAGTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50515597 224 +  54856640 TTTATAGC------AAACTACTC--AAAAA--CATTTCAGATAA----TTTTAAGGAATTAAAATCTGGGTATGGC----TGACAAAGAAATTCACGATACATATTTAAAGTAGTACATTT----AAAGATGAGCTGTCTTCTTTTAAG----AAAATAATTCAGCAAAAAAA-CTTCTGGGATGCTATTTGGTCATATGTTTTAAGAGTATGTTTATACCTAAGTACAAACATTCAGAAGTAGTTCAGTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       659029 234 -   2910086 TTTATAGCAAATATAAACTACTC--AAAAA---ATTTCAGATAA----TTTTAAGGAATTAAAATCTGGGTATGGC----TGACAAAGGAATTCACAATATATATTTAAAGTAGTACATTTAAAGAAAGATGAGCTGTCTTCTTGTAAG----AAAATAATTCAGTAAAAAACTTTTCTGGGATGCTATTTGGTCATATGTTTTAATAGTATGTTTATACCTAAGTACAAACATTCAGAAGTAGTTCAGTA
i cebCap1.NW_016107610v1    I 382 C 0
s aotNan1.NW_018505940v1     40684796 237 +  42888418 TTTATAGCAAATATAAACTACTC--AGAAAAAAATTTCAGATAA----TTTTAAGAAATTAAAATCTGGGTATGGC----TGACAAAGGAATTCACAATATATATTTAAAGTAGTACATTTAAAGAAAGATGAGCTGTCTTCTTTTAAG----AAAATAATTCAGTAAAAAACTTTTCTGGGATGCTATTTGGTCATATGTTTTAAGAGTATGTTTATACCTAAGTACAAACATTCAGAAGTAGTTCAGTA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             676233 230 -  36342412 TCTTCAGCAAATGTAAATCACACAGAAAAA--AAATCCAGAAAA----CATAAAGCCACGTATTTCTGGATTTGACTCTCTAACAAATGAACTCACAATATATTTTTTAAATAGTGC-TTTAAATAAAAATTAACTGTCTTATTTTAGGATTAAAAAAAATCCCAGAAATGTTTTTACTGA---GTTATTTGGTCTCCT----------TATGTTTGTACCT-AGAACAAATGTTAGTAAGTAGTTTAGTA
i otoGar3.GL873530          I 1 C 0
s canFam3.chr3               54450038 162 +  91889043 TCTACAGCAAATATAAATCACAC--ACAAA--AAATTCAGAAGATGGATTTTAAGAATTTAAAATCTGGGTA-----------------AACTTACaaaatatt------aaattatattta---------------------tttgaa----aaaat--tttatttaaga---------------------------------gagagtgggtgcacacatgtgtgc--acatggaggggtggaggggca
i canFam3.chr3              C 0 I 258
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I

a score=296821.000000
s hg38.chr15_KI270850v1_alt    376980 26 +    430880 CTTCTAAGATTCTAC-TATGAGGATAA
s panTro5.chr15              63530080 26 +  83230942 CTTCTAAGATTCTAC-TATGAGGATAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80487036 26 +  99763055 CTTCTAAGATTCTAC-TATGAGGATAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        87314 26 -   1709092 CTTCTAAGATTCTAC-TATGAGGATAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17246768 26 - 121039945 CTTCTAAGATTCTAC-TACAAGGATAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60927488 26 + 169600520 CTTCTAAGATTCTAC-TGTGAGGATAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108454236 26 - 171882078 CTTCTAAGATTCTAC-TGTGAGGATAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        67645 26 -   2311642 CTTCTAAGATTCTAC-TGTGAGGATAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        63143 26 -   1987038 CTTCTAAGATTCTAC-TGTGAGGATAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21143829 26 -  24206276 CTTCTAAGATTCTAC-TGTGAAGATAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        74114 26 -   1397330 CTTCTAAGATTCTAC-TGTGAGGATAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        82142 26 -   1784207 CTTCTAAGATTCTAC-TATGAGGATAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22283483 26 + 158406734 CTTCTAAGATTCTAC-TATAAGGATAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50515821 26 +  54856640 CTTCTAAGATTCTAC-TATAAGGACAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       659263 26 -   2910086 CTTCTAAGATTCTAC-TATAAGGATAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40685033 27 +  42888418 CTTCTAAGATTCTACTTATAAGGATAA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             676463 26 -  36342412 CTTCTAAGATTCTGT-TATGAGGATGA
i otoGar3.GL873530          C 0 I 249
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54450200 258 +  91889043 I

a score=67258.000000
s hg38.chr15_KI270850v1_alt    377006 7 +    430880 CGGCCAA
s panTro5.chr15              63530106 7 +  83230942 CGGCCAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80487062 7 +  99763055 CGGCCAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        87340 7 -   1709092 CGGCCAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17246794 7 - 121039945 TGGCCAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60927514 7 + 169600520 TGGTCAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108454262 7 - 171882078 TGGTCAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        67671 7 -   2311642 TGGTCAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        63169 7 -   1987038 TGGTCAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21143855 7 -  24206276 TGGTCAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        74140 7 -   1397330 TGGTCAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        82168 7 -   1784207 TGGTCAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22283509 7 + 158406734 TGGTCAA
i calJac3.chr6              C 0 I 1248
s saiBol1.JH378108           50515847 7 +  54856640 TGGTCAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       659289 7 -   2910086 TGGTCAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40685060 7 +  42888418 TGGTCAA
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54450200 258 +  91889043 I
e otoGar3.GL873530             676489 249 -  36342412 I

a score=1894.000000
s hg38.chr15_KI270850v1_alt    377013 22 +    430880 A--Ttttgttttgttttgtttttg
s panTro5.chr15              63530113 16 +  83230942 A--ttttgttttg------ttttg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80487069 16 +  99763055 A--ttttgttttg------ttttg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        87347 16 -   1709092 A--ttttgttttg------ttttg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17246801 11 - 121039945 A--ttttg-----------ttttg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60927521  8 + 169600520 Attttttg----------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108454269  8 - 171882078 Attttttg----------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        67678  8 -   2311642 Attttttg----------------
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        63176 18 -   1987038 Attttttgttttg------ttttg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21143862 18 -  24206276 Attttttgttttg------ttttg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        74147 18 -   1397330 Attttttgttttg------ttttg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        82175 18 -   1784207 Attttttgctttg------ttttg
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50515854  6 +  54856640 --tttttg----------------
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       659296  6 -   2910086 --tttttg----------------
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40685067  6 +  42888418 --tttttg----------------
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e calJac3.chr6               22283516 1248 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54450200 258 +  91889043 I
e otoGar3.GL873530             676489 249 -  36342412 I

a score=630370.000000
s hg38.chr15_KI270850v1_alt    377035 61 +    430880 tttttgttttgagacaggctctggctctgtcacacaggctggaatgcagtggtgtgatctc
s panTro5.chr15              63530129 61 +  83230942 tttttgttttgagacaggctctggctctgtcacacaggctggaatgcagtggtgtgatctc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80487085 61 +  99763055 tttttgttttgagacaggctctggctctgtcacacaggctggaatgcagtggtgtgatctc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        87363 61 -   1709092 tttttgttttgagacaggctctggctctgtcacacaggctggaatgcagtggtgtgatctc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17246812 61 - 121039945 tttttgttttgagacaggctctggctctgttacacaggctggaatgcagtggtgtgatctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60927529 60 + 169600520 -ttttgttttgagacaggctctggctctgtcacacaggctggaatgcagtggtgtgatgtc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108454277 60 - 171882078 -ttttgttttgagacaggctctggctctgtcacacaggctggaatgcagtggtgtgatctc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        67686 60 -   2311642 -ttttgttttgagacaggctctggctctgtcacacaggctggaatgcagtggtgtgatctc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        63194 61 -   1987038 tttttgttttgagacaggctctggctctgtcacacaggctggaatgcaatggtgtgatctc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21143880 61 -  24206276 tttttgttttgagacaggctctggctctgtcacacaggctggaatgcagtggtgtgatctc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        74165 61 -   1397330 tttttgttttgagacaggctctggctctgtcacacaggctggaatgcaatggtgtgatctc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        82193 61 -   1784207 tttttgttttgagacaggctctggctctgtcacacaggctagaatgcagtggtgtgatctc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22284764 61 + 158406734 tttttgttttgagacagggtctgcctctgttgcacaggctggaatgcaattgtgtgatctc
i calJac3.chr6              I 1248 C 0
s saiBol1.JH378108           50515860 59 +  54856640 --tttgttttgagacagggtctggctctgttgcacaggctggaatgcaattgtgtgatctc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       659302 59 -   2910086 --tttgttttgagacagggtctggctctgttgcacaggctggaatgcaattgtgtgatctc
i cebCap1.NW_016107610v1    C 0 I 4
s aotNan1.NW_018505940v1     40685073 59 +  42888418 --tttgttttgagacagggtctggctctgttgcacaggctggaatgcaattgtgtgatctc
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54450200 258 +  91889043 I
e otoGar3.GL873530             676489 249 -  36342412 I

a score=29753.000000
s hg38.chr15_KI270850v1_alt    377096 4 +    430880 atct
s panTro5.chr15              63530190 4 +  83230942 atct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80487146 4 +  99763055 atct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        87424 4 -   1709092 atct
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17246873 4 - 121039945 atct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60927589 4 + 169600520 atct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108454337 4 - 171882078 atct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        67746 4 -   2311642 atct
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        63255 4 -   1987038 atct
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21143941 4 -  24206276 atct
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        74226 4 -   1397330 atct
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        82254 4 -   1784207 atct
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22284825 4 + 158406734 aact
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50515919 4 +  54856640 gact
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40685132 4 +  42888418 aact
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54450200 258 +  91889043 I
e cebCap1.NW_016107610v1       659361 4 -   2910086 I
e otoGar3.GL873530             676489 249 -  36342412 I

a score=28224.000000
s hg38.chr15_KI270850v1_alt    377100 4 +    430880 cact
s panTro5.chr15              63530194 4 +  83230942 cact
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80487150 4 +  99763055 cact
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        87428 4 -   1709092 cact
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17246877 4 - 121039945 cact
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60927593 4 + 169600520 cact
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108454341 4 - 171882078 cact
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        67750 4 -   2311642 cact
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        63259 4 -   1987038 cact
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21143945 4 -  24206276 cact
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        74230 4 -   1397330 cact
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        82258 4 -   1784207 cact
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22284829 4 + 158406734 catt
i calJac3.chr6              C 0 I 2236
e aotNan1.NW_018505940v1     40685136 0 +  42888418 C
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54450200 258 +  91889043 I
e cebCap1.NW_016107610v1       659361 4 -   2910086 I
e otoGar3.GL873530             676489 249 -  36342412 I
e saiBol1.JH378108           50515923 0 +  54856640 C

a score=1067073.000000
s hg38.chr15_KI270850v1_alt    377104 221 +    430880 gcaccctctgcctcccaggctcaagcgatcctcccacctcagcccctggagcagccaggactacaggcacatgccaccacatccaactaggtttttttttgtttgttttttgtttttgtattttttttttgtagaaacagggtttcgtcatattgcccaggctggtctcgaactcctgggctcaagag--atccacctgccttggcctcccaaagtgtgggat
s panTro5.chr15              63530198 212 +  83230942 gcaacctctgcctcccaggctcaagcgatcctcccacctcagcccctggagcagccaggactacaggcacatgccaccacatccaactaggtt--------tttgtttttt-tttttgtattttttttttgtagaaacagggtttcgtcatattgcccaggctggtctcgaactcctgggctcaagag--atccacctgccttggcctcccaaaatgtggaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80487154 197 +  99763055 gcaacctctgcctcccaggctcaagcgatcctcccacctcagcccctggagcagccaggactacaggcacatgccaccacatccaactagg------------tgtttttt------------tttttttgtagaaacagggttttgtcatattgcccaggctggtctcgaactcctgggctcaagag--atccacctgccttggcctcccaaaatgtggaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        87432 216 -   1709092 gcaacctctgcctcccaggctcaagcgatcctcccacctcagcccctggagcagccaggactacaggcacatgccaccacatccaactagtttgttttttgtatttttttt--ttgtattttttttttttgtagaaacagggtttcgtcatattgcccaggctggtctcgaactcctgggctcaagag--atccac---ccttggcctcccaaagtgtgggat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17246881 211 - 121039945 gcaacctctgcctcccaggctcaagcgatcctcccacctcagcccctggagcagccaggactacaggcacatgccaccacatacaactagttttttttttatttttttttt-------ttatttttttttgtagaaacagggtttcgtcatattgcccaggctggtctcgaa---ctgggctcaagag--atctacctgccttggcctcccaaagtgtgggat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60927597 201 + 169600520 gcaacctctgcctcccaggctcaagcgatcctcccacctcagcctctggagcagctaggactacaggcacaggccaccacatccaacaaa-------------tttttttt---------gtatttttttgtaaaaacagggtttcatcatattgcccaggctagtctcgaactcctgggctcaagagagatccacctgccttagcctcccaaagtgggagaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108454345 201 - 171882078 gcaacctctgcctcccaggctcaagcgatcctcccacctcagcctctggagcagctaggactacaggcacaggccaccacatccaactaa-------------tttttttt---------gtatttttttgtaaaaacagggtttcatcatattgcccaggctagtctcgaactcctgggctcaagagagatccacctgccttagcctcccaaagtgtgagaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        67754 201 -   2311642 gcaacctctgcctcccaggctcaagcgatcctcccacctcagcctctggagcagctaggactacaggcacaggccaccacatccaactaa-------------tttttttt---------gtatttttttgtaaaaacagggtttcatcatattgcccaggctagtctcgaactcctgggctcaagagagatccacctgccttagcctcccaaagtgtgagaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        63263 201 -   1987038 gcaacctctgcctcccaggctcaagcgatcctcccacctcagcctctggagcagctaggactacaggcacaggccaccacatccaactaa-------------tttttttt---------gtattttttggtaaaaacagggtctcatcatattgcccaggctagtctcgaactcctgggctcaagagatatccacctgccttagcctcccaaagtgtgagaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21143949 201 -  24206276 gcaacctctgcctcccaggctcaagcgattctcccacctcagcctctggagcagccaggactacaggcacaggccaccacatccaactaa-------------tttttttt---------gtatttttttgtaaaaacagggtttcatcatattgcccaggctggtctcgaactcctgagctcaagagatatccacctgccttagcctcccaaagtgtgagaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        74234 202 -   1397330 gcaacctctgactcccaggctcaagcgatcctcccacctcagcctctggagcagctaggactacaggcacaggccaccacatccaactaat------------tttttttt---------gtattttttggtaaaaacagggtctcatcatattgcccaggctagtctcgaactcctgggctcaagagatatccacctgccttagcctcccaaagtgtgagaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        82262 201 -   1784207 gcaacctctgcctcccaggctcaagcgatcctcccacctcagcctctggagcagctaggactacaggcacatgccaccacatccaactaa-------------tttttttt---------gtatttttttgtaaaaacagggtttcatcatattgcccaggctggtctcaaactcctgggctcaagagatatccacctgccttagcctcccaaagtgtgagaa
i colAng1.NW_012117110v1    C 0 C 0
e aotNan1.NW_018505940v1     40685136   0 +  42888418 C
e mm10.chr7                  81401067 2019 + 145441459 I
e calJac3.chr6               22284833 2236 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54450200 258 +  91889043 I
e cebCap1.NW_016107610v1       659361   4 -   2910086 I
e otoGar3.GL873530             676489 249 -  36342412 I
e saiBol1.JH378108           50515923   0 +  54856640 C

a score=381657.000000
s hg38.chr15_KI270850v1_alt    377325 64 +    430880 tacaggtgtgagtgaccgcatccagccCAAAGGTTTT------------CTTAATGT------GGAAGTTCATCCCCACATT
s panTro5.chr15              63530410 64 +  83230942 tacaggtgtgagtcaccgcatccagccCAAAGGTTTT------------CTTAATGT------GGAAGTTCATCCCCACATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80487351 64 +  99763055 tacaggtgtgagtcaccgcatccagccCAAAGGTTTT------------CTTAATGT------GGAAGTTCATCCCCACATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        87648 64 -   1709092 tacaggtgtgagtcaccgcatccagccCAAAGGTTTT------------CTTAATGT------GGAAGTTCATCCCCACATT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17247092 64 - 121039945 tacaggtgtgagtcaccgcatccggccCAAAGGTTTT------------CTTAATGT------GGAGGTTCATCCCCACATT
i nomLeu3.chr6              C 0 I 301
s rheMac8.chr7               60927798 64 + 169600520 tacaggtgtgagccactgcatccggccCAAAGGTTTT------------CTTAATGT------GGAGATTCATCCCCACATT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108454546 64 - 171882078 tacaggtgtgagccactgcatccggccCAAAGGTTTT------------CTTAATGT------GGAGATTCATCCGCACATT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        67955 64 -   2311642 tacaggtgtgagccactgcatccggccCAAAGGTTTT------------CTTAATGT------GGAGATTCATCCCCACATT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        63464 64 -   1987038 tacaggtgtgagccactgcatccggccCAAAGGTTTT------------CTTAATGT------GGAGATTCATCCCCACATT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21144150 64 -  24206276 tacaggtgtgagccactgcatctgcccCAAAGGTTTT------------CTTAATGT------GGAGATTCATCCCCACATT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        74436 64 -   1397330 tacaggtgtgagccactgcatccggccCAAAGGTTTT------------CTTAATGT------GGAGATTCATCCCCACATT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        82463 64 -   1784207 tacaggtgtgagccactgcatccggccCAAAGGTTTT------------CTTAATGT------GGAGGTTCATCCCCACATT
i colAng1.NW_012117110v1    C 0 C 0
s canFam3.chr3               54450458 72 +  91889043 TACAGATGTTAG----------CAGTCCAAGGTTTCTAGGATTCGATCACAGACTGTCCCATAGGAAGTTCACTGCCACATT
i canFam3.chr3              I 258 C 0
e aotNan1.NW_018505940v1     40685136  0 +  42888418 C
e mm10.chr7                  81401067 2019 + 145441459 I
e calJac3.chr6               22284833 2236 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e cebCap1.NW_016107610v1       659361  4 -   2910086 I
e otoGar3.GL873530             676489 249 -  36342412 I
e saiBol1.JH378108           50515923  0 +  54856640 C

a score=307226.000000
s hg38.chr15_KI270850v1_alt    377389  53 +    430880 AAGAGT---TAATAAA--------------------ATAATAGC-------------------ATGTACAACTTCAAAC----AAGGAGGATATGAAGA----
s panTro5.chr15              63530474  53 +  83230942 AAGAGT---TAATAAA--------------------ATAATAGC-------------------ATGTACAACTTCAAAC----AAGGAGGATATGAAGA----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80487415  53 +  99763055 AAGAGT---TAATAAA--------------------ATAATAGC-------------------ATGTACAACTTCAAAC----AAGGAGGATATGAAGA----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        87712  53 -   1709092 AAGAGT---TAATAAA--------------------ATAATAGC-------------------ATGTACAACTTCAAAT----AAGGAGGATATGAAGA----
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17247457  53 - 121039945 aaGAGT---TAATAAA--------------------ATAATAGC-------------------ATGTACAACTTCAAAT----AAGGTAGATATTAAGA----
i nomLeu3.chr6              I 301 C 0
s rheMac8.chr7               60927862  53 + 169600520 AAGAGT---TATTAAG--------------------ATAATAGC-------------------ATGTACAACTTCAAAT----AAGGAGGATATGAAGA----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108454610  53 - 171882078 AAGAGT---TAATAAA--------------------ATAATAGC-------------------ATGTACAACTTCAAAT----AAGGAGGATATGAAGA----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        68019  53 -   2311642 AAGAGT---TAATAAA--------------------ATAATAGC-------------------ATGTACAACTTCAAAT----AAGGAGGATATGAAGA----
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        63528  53 -   1987038 AAGAGT---TAATAAA--------------------ATAATAGC-------------------ATGTACAACTTCAAAT----AAGGAGGATATGAAGA----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21144214  53 -  24206276 AAGAGT---TAATAAA--------------------ATAATAGC-------------------ATGTACAACTTCAAAT----AAGGAAGATATGAAGA----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        74500  53 -   1397330 AAGAGT---TAATAAA--------------------ATAATAGC-------------------ATGTACAACTTCAAAT----AAGGAGGATATGAAGA----
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        82527  53 -   1784207 AAGAGT---TAATAAA--------------------ATAATAGC-------------------ATGTACAACTTCAAAT----AAGGAGGATATGAAGA----
i colAng1.NW_012117110v1    C 0 C 0
s canFam3.chr3               54450530 103 +  91889043 CAGAGTTCCTGATAAAGCTGTGCACAACTTCACTGGATCTTAGCCAAGAGGCTGTGAAGCGATGTGCACAACTTAAAATAGGAAAGGAAAATATAAAGTGAGA
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018505940v1     40685136   0 +  42888418 C
e mm10.chr7                  81401067 2019 + 145441459 I
e calJac3.chr6               22284833 2236 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e cebCap1.NW_016107610v1       659361   4 -   2910086 I
e otoGar3.GL873530             676489 249 -  36342412 I
e saiBol1.JH378108           50515923   0 +  54856640 C

a score=1423209.000000
s hg38.chr15_KI270850v1_alt    377442 227 +    430880 ATTATCTCCACCT-AATTCCCT--ACCCCAGAGATAcc-tttcaaagat--ttttatgtatac-aagcatgtatacacatagcttttaaaaaatatatgcacaaatggtcaaa-tataccatttcac------atc-ttttt---tcaagtatt----ttaagagttctttccatatctgtataaagaaatcagcttcattattttatggcagcatggcagtccattccatgaacatg-atgtatctaac
s panTro5.chr15              63530527 227 +  83230942 ATTATCTCCACCT-AATTCCCT--ACCCCAGAGATAGc-tttcaaagat--ttttatgtatac-aagcatgtatacacatagcttttaaaagatatatgcacaaatggtcaaa-tataccatttcac------atc-ttttt---tcaagtatt----ttaagagttctttccacatctgtataaagaaatcagcttcattattttatggcagcatggcagtccattccatgggcatg-atgtatctaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80487468 227 +  99763055 ATTATCTCCACCT-AATTCCCT--ACCCCAGAGATAGc-tttcaaagat--ttttatgtatac-aaccatgtatacacatagcttttaaaagatatatgcacaaatggtcaaa-tataccatttcac------atc-ttttt---tcaagtatt----ttaagagttctttccacatctgtataaagaaatcagcttcattattttatggcagcatggcagtccattccatgaacatg-atgtatctaac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        87765 229 -   1709092 ATTATCTCCACCT-AATTCCCT--ACCCCAGAGATAGc-tttcaaagattcttttatgtatac-aagcatgtatacacataacttttaaaa-atatatgcacaaatggtcaaa-tataccatttcac------atctttttt---tcaagtatt----ttaagagttctttccatatctgtataaagaaatcaacttcattattttatggcagcatggcagtccattccatgaacatg-atgtatctaac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17247510 229 - 121039945 ATTATCTccaccc-aattccct--accccagagatatc-tttcgaagattcttttgtgtatac-aagcatgtatacacatagcttttaaaa-atatatgcacaaatggtcaaa-tataccatttcac------atctttttt---tcaagtatt----ttaagaattctttccatatctgtatacagaaatcaacttcattattttatggcagcatggcagtccattccatgaacatg-atgtatctaac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60927915 235 + 169600520 ATTATCTCTACCC-AATTCCCT--ACCCCAGAGATACCTTTTCAAAGATTCTTTTATGTATAC-AAGCATGTATACACATAGCTTTAAAAA-ATATATGCACAAATGGTCAAA-TATACCATTTCAATTGAAAATA-TACTT---TCAAGtatt----ttaagagttctttccatatctgtatacagaaatcaacttcattaccttatggcagcatggcagtcccttccatgaacata-atgtatctaac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108454663 235 - 171882078 ATTATCTCTACCC-AATTCCCT--ACCCCAGAGATACCTTTTCAAAGATTCTTTTATGTATAC-AAGCATGTATACACATAGCTTTAAAAA-ATATATGTACAAATGGTCAAA-TATACCATTTCAATTGAAAATA-TACTT---TCAAGTATT----TTAAgagttctttccaaatctgtatacagaaatcaacttcattaccttatggcagcatggcagtcccttccatgaacata-atgtatctaac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        68072 235 -   2311642 ATTATCTCTACCC-AATTCCCT--ACCCCAGAGATACCTTTTCAAAGATTCTTTTATGTATAC-AAGCATGTATACACATAGCTTTAAAAA-ATATATGCACAAATGGTCAAA-TATACCATTTCAATTGAAAATA-TACTT---TCAAGtatt----ttaagagttctttccatatctgtatacagaaatcaacttcattaccttatggcagcatggcagtcccttccatgaacata-atgtatctaac
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        63581 235 -   1987038 ATTATCTCTACCC-AATTCCCT--ACCCCAGAGATACCTTTTCAAAGATTCTTTTATGTATAC-AAGCATGTATACACATAGCTTTAAAAA-ATATATGCACAAATGGTCAAA-TATACCATTTCAATTGAAAATA-TACTT---TCAAGtatt----ttaagagttctttccatatctgtatacagaaatcaacttcattaccttatggcagcatggcagtcccttccatgaacata-atgtatctaac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21144267 235 -  24206276 ATTATCTCTACCC-AATTCCCT--ACCCCAGAGATACCTTTTCAAAGATTCTTTTATGTATAC-AAGCATGTATACACATAGCTTTAAAAA-ATATATGCACAAATGGTCAAA-TATACCAtttcacttgaaaata-tactt---tcaagtatt----ttaagagttctttccatatctgtatacagaaatcaacttcattaccttatggcagcatggcagtcccttccatgaacata-atgtatctaac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        74553 235 -   1397330 ATTATCTCTACCC-AATTCCCT--ACCCCAGAGATACCTTTTCAAAGATTCTTTTATGTATAC-AAGCATGTATACACATAGCTTTAAAAA-ATATATGCACAAATGGTCAAA-TATACCATTTCAATTGAAAATA-TACTT---TCAAGtatt----ttaagagttctttccatatctgtatacagaaatcaacttcattaccttatggcagcatggcagtcccttccatgaacata-atgtatctaac
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        82580 235 -   1784207 ATTATCTCCACCC-AATTCCCT--ACCCCAGAGATACCTTTTCAAAGATTCTTTTATGTATAC-AAGCATGTATACACATAGCTTTAAAAA-ATATATGCACAAATGGTCAAA-TATACCAtttcacttgaaaata-tactt---tcaagtatt----ttaagagttctttccatatctgtatacagaaatcaacttcattatcttatggcagcatggcagtccatttcatgaacata-atatatctaac
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873530             676738 223 -  36342412 ACTACCTTCATCC-AATTCCCTAAACTTCACAGATCCC-TTTCAAAGATTCTTTCATGTACAT-AAGCATATAAGCACATAGCTTTAAAAA-AAAT----GCAAAGAGTCAAA-TACACTATTTAAC------ATC-TTTTTCCCCCAAGTATT----TTGAT-GTTCTTT----ACCTGTATGTACAAATCAAATTCATCCTTTTGTGGTGG-ATGGCAGTCCATTCCATGAACATA-ACATAATCAAC
i otoGar3.GL873530          I 249 C 0
s canFam3.chr3               54450633 221 +  91889043 ATCCTCTTTCCTCAAATTCCCC--AACTCAGAAGTACC-TGTAGAAGATGCTTTCATGAGCACAAAGCACATAAACACAGAGCTTTTACA--AGATAGACACAAAGAGTCAAATTGTATTATTTCAG------ATC-TTTCT---TCCCTTACTATAGTTTGGACCTCTTTCCAT---TGTGTACAGAGATCGACTTCATGGTCATGTGGCAGCA------TCCAGCTTGTGAGCGAGCGTGCAC-----
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018505940v1     40685136   0 +  42888418 C
e mm10.chr7                  81401067 2019 + 145441459 I
e calJac3.chr6               22284833 2236 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e cebCap1.NW_016107610v1       659361   4 -   2910086 I
e saiBol1.JH378108           50515923   0 +  54856640 C

a score=304076.000000
s hg38.chr15_KI270850v1_alt    377669 31 +    430880 catttctctactgatgagcattcaggctgct
s panTro5.chr15              63530754 31 +  83230942 catttctctactgatgagcattcaggctgct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80487695 31 +  99763055 catttctctactgatgagcattcaggctgct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        87994 31 -   1709092 catttctctactgatgagcattcaggctgct
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17247739 31 - 121039945 catttctctactgatgagcattcaggctgct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60928150 31 + 169600520 catttctctactgataagcattcaggcttct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108454898 31 - 171882078 catttctctactgataagcattcaggcttct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        68307 31 -   2311642 catttctctactgataagcattcaggcttct
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        63816 31 -   1987038 catttctctactgataagcattcaggcttct
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21144502 31 -  24206276 catttctctactgataagcattcaggctgct
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        74788 31 -   1397330 catttctctactgataagcattcaggcttct
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        82815 31 -   1784207 catttctctactgatgagcattcaggctgct
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50515923 31 +  54856640 cattTCTCTACCGATATGCATTCAGGCTGTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       659365 31 -   2910086 cattTCTCTACTGATAGGTATTCAGGCTGAT
i cebCap1.NW_016107610v1    I 4 C 0
s aotNan1.NW_018505940v1     40685136 31 +  42888418 cattTCTCTACTGATGTGCATTCAGGCTGCT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             676961 14 -  36342412 CATTTCTCTATTGA-----------------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54450854 31 +  91889043 TATgtctctactgatggacactcaggtcttt
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e calJac3.chr6               22284833 2236 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I

a score=503686.000000
s hg38.chr15_KI270850v1_alt    377700 50 +    430880 tctagtagtttttatttcttctaca---aataaggcaatgaacatccctcaac
s panTro5.chr15              63530785 50 +  83230942 tctagtagtttttatttcttctaca---aataaggcaatgaacatccctcaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80487726 50 +  99763055 tctagtagtttttatttcttctaca---aataaggcaatgaacatccctcaac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        88025 50 -   1709092 tctagtagtttttatttcttctaca---aataaggcaatgaacatccctcaac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17247770 46 - 121039945 tctagtagtttttatttcttctac-------aaggcaatgaacatccctcaac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60928181 50 + 169600520 tctagtagtttttatttcttcaaca---aataaggcaatgaacatccctcaac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108454929 50 - 171882078 tctagtagtttttatttcttcaaca---aataaggcaatgaacatccctcaac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        68338 50 -   2311642 tctagtagtttttatttcttcaaca---aataaggcaatgaacatccctcaac
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        63847 50 -   1987038 tctagtagtttttatttcttcaaca---aataaggcaatgaacatccctcaac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21144533 50 -  24206276 tctagtagtttttatttcttcaaca---aataaggcaatgaacatccctcaac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        74819 50 -   1397330 tctagtagtttttatttcttcaaca---aataaggcaatgaacatccctcaac
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        82846 50 -   1784207 tctagtagtttttatttcttctaca---aataaggcaatgaacatccctcaac
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22287069 50 + 158406734 TCTAGTTGCTTTTATTTCTTCTACA---AATAAAGCAGTGAACACCCCTCAAC
i calJac3.chr6              I 2236 C 0
s saiBol1.JH378108           50515954 50 +  54856640 TCCAGTTGTTTTTATTTCTTCTACA---AATAAAGCAGTGAACACCCATCAAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       659396 50 -   2910086 TCTAGTTGTTTTTATTATTTCTACA---AATATAGCAGTGAACACAACTCAAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40685167 50 +  42888418 TCTAGTTGTTTTTATTTCTTCTACA---AATAAAGCAGTGAACACCCCTCGAC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             676975 14 -  36342412 ---------------------------------------GAACTACTTTCAAC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54450885 53 +  91889043 cctagtagttatttcttcttctacaaacaataaggcaatatacacccctctgc
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I

a score=1561697.000000
s hg38.chr15_KI270850v1_alt    377750 147 +    430880 attgatcttga-cttacttgggcaagcatacttgtTAAATGCATACACCTTACAATCCAGTACATTTAAAATTGATAGCTGTTGGTCAAAATTGACCCAAGAACCACACCCATTTAAATTCCCAACGATATGAGAACTATTTCTTTGT
s panTro5.chr15              63530835 147 +  83230942 attgatcttga-cttacttgggcaagcatacttgttaaatgcatacaccttacaatccagtacatttaaaattgatagctgttggtcaaaattgccccaagaaccacaccaatttaaattcccaacgatatgggaactatttctttgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80487776 147 +  99763055 attgatcttga-cttacttgggcaagcatacttgttaaatgcatacaccttacaatccagtacatttaaaattgatagctgttggtcaaaattgccccaagaaccacacccatttaaattcccaacgatatgggaactatttctttgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        88075 147 -   1709092 attgatcttga-cttacttgggcaagcatacttgttaaatgcatacaccttacaatccagtacatttaaaattgatagctgttggtcaaaattgccccaagaaccacacccatttaaattcccaacgatatgagaactatttctttgt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17247816 147 - 121039945 attgatcttga-cttacttgggcaagcatacttgttaaatgcatacaccttacaatccagtacatttaaaattgatagatgttggtcaaaattgccccaagagccacacccatttaaattcccaaagatatgagaactatttctttgc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60928231 147 + 169600520 attgatcttga-cttacttgggcaagcatacttgataaatgcatacatcttacaatccagtacatttaaaattgatagatgttggtcaaaattgccccaagagccacaccagtttaaattcccaacgatatgagaactatttctttgc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108454979 147 - 171882078 attgatcttga-cttacttgggcaagcatacttgataaatgcatacatcttacaatccagtacatttaaaattgatagatgttggtcaaaattgccccaagagccacaccagtttaaattcccaacgatatgagaactatttctttgc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        68388 147 -   2311642 attgatcttga-cttacttgggcaagcatacttgataaatgcatacatcttacaatccagtacatttaaaattgatagatgttggtcaaaattgccccaagagccacaccagtttaaattcccaacgatatgagaactatttctttgc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        63897 147 -   1987038 attgatcttga-cttacttgggcaagcatacttgataaatgcatacatcttacaatccagtacatttaaaattgatagatgttggtcaaaattgccccaagagccacaccagtttaaattcccaacgatatgagaactatttctttgc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21144583 147 -  24206276 attgatcttga-cttacttgggcaagcatacttgataaatgcatacatcttacaatccagtacatttaaaattgatagatgttggtcaaaattgtcccaagagccacaccagtttaaattcccaatgatatgagaactacttctttgc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        74869 147 -   1397330 attgatcttga-cttacttgggcaagcatacttgataaatgcatacatcttacaatccagtacatttaaaattgatagatgttggtcaaaattgccccaagagccacaccagtttaaattctcaacgatatgagaactatttctttgc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        82896 147 -   1784207 attgatcttga-cttacttgggcaagcatacttgacaaatgcatacatcttacaatccagtacatttaaaattgacagatgttggtcaaaattgccccaagagccacaccagtttaaattcccaacgatatgagaactatttctttgc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22287119 147 + 158406734 ATTGATCTTTA-CTTACTTGGGCAAGCATACTTGATAAATTCATACACATCACAATCTAGTATATTTAAAATTGATAGATAACAGTCGCAATTGACCCAAGAGCCACACCAGTTTGAATTCCCAAGTATATGAGAACTATTTCTTTGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50516004 147 +  54856640 ATTCATCTTTA-CTTACTTGGGCAAGCATACTTGATAAATGCATACACTTCACAATCTAGCATATTTAAAATTGATAGGTATCGGTCGCAATTGACCCAAGAGCCACACCAGTTTAAATTCCCAACTATATGAGAACTATTTCTTTGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       659446 145 -   2910086 ACTGA--TTTA-CTTACTTGGGCAAGCATACTTGATAAATGCATACACTTCACAATCTAGTATATTTAAAATTGATAGATATCGGTCACAATTGACCCAAGAGCCACACCAGTTTAAATTCCCAACTATATGAAAACTATATCTTTGC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40685217 147 +  42888418 ATTGATCTTTA-CTTACTTGGGCAAGCATACTTGATAAATGCATACACTTCACAATCTAGTATATTTAAAATTGATAGATATCAGTTGCAATTGACCCAAGAGCCACAACAGTTTAAATTCTCAACTATATGAGAACTATTTCTTTGC
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54450938 145 +  91889043 atttattttcatttttcttatgcaaaca---ttgacaaatacatattcctcatgatccagtaggtttaaaatggatagatgttggccaaaattgccccaagagtcattctggtcttaattcccaactacatgtgacctatttctccat
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e otoGar3.GL873530             676989   0 -  36342412 C

a score=1130407.000000
s hg38.chr15_KI270850v1_alt    377897 102 +    430880 ACCCTTACCAAATTTTACTTTTTATGAACCTGACAGGTAAAC-AA-TAGAAC--------------CCATTGTTTAAATCAATGATGGGA--TTCTGA-GCTGAAGGACAAGGAGTCTACC
s panTro5.chr15              63530982 102 +  83230942 acccttaccaaATTTTACTTTTTATGAACCTGACAGGTAAAC-AA-CAGAAT--------------CCATTGTTTAAATCAATGATGGGA--TTCTGA-GCTGAAGGACAAGGAGTCTACC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80487923 102 +  99763055 acccttaccaaATTTTACTTTTTATGAACCTGACAGGTAAAC-AA-CAGAAT--------------CCATTGTTTAAATCAATGATGGGA--TTCTGA-GCTGAAGGACAAGGAGTCTACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        88222 102 -   1709092 acccttaccaaATTTTACTTTTTATGAACCTGACAGGTAAAC-AA-TAGAAC--------------CCATTGTTTAAATCAATGATGGGA--TTCTGA-GCTGAAGGACAAGGAGTCTACC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17247963  99 - 121039945 acccttgccaaATTTTACTTTTTATGAACCTGACAAGTA----AA-TAGAAT--------------CCGTTGTTTAAATCAATGATGGGA--TTCTGA-GCTAAAGGACAAGGAGTCTACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60928378 102 + 169600520 acccttgccaagttttactttttatgaacctgacaggtaaac-aa-tagaac--------------ccagtgtTTAAATCAATGATGGGG--TTCTGA-GCTGAAGGACAAGATGTCTACc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108455126 102 - 171882078 acccttgccaaGTTTTACTTTTTATGAACCTGACAGGTAAAC-AA-TAGAAC--------------CCAGTGTTTAAATCAATGATGGGG--TTCTGA-GCTGAAGGGCAAGATGTCTACc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        68535 102 -   2311642 acccttgccaagttttactttttatgaacctgacaggtaaac-aa-tagaac--------------ccagtgtTTAAATCAATGATGGGG--TTCTGA-GCTGAAGGACAAGATGTCTACc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        64044 102 -   1987038 acccttgccaaGTTTTACTTTTTATGAACCTGACAGGTAAAC-AA-TAGAAC--------------CCAGTGTTTAAATCAATGATGGGG--TTCTGA-GCTGAAGGACAAGATGTCTACc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21144730 102 -  24206276 acccttgccaagttttactttttatgaacctgacaggtaaac-aa-tagaac--------------ccagtgtTTAAATCAATGATGGGG--TTCTGA-GCTGAAGGACAAGATGTCTACC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        75016 102 -   1397330 acccttgccaaGTTTTACTTTTTATGAACCTGACAGGTAAAC-AA-TAGAAC--------------CCAGTGTTTAAATCAATGATGGGG--TTCTGA-GCTGAAGGACAAGATGTCTACc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        83043 102 -   1784207 acccttgccaagttttactttttatgaacctgacaggtaaac-aa-tagaac--------------ccagtgtTTAAATCAATGATGGGG--TTCTGA-GCTGAAGGACAAGATGTCTACC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22287266 102 + 158406734 ACCCTTGCCAAAGTTTACTTTTTAAGAACCTGACAGGTAAACTAA--AGAAT--------------CCATTGTTTAAATCAATGACGGGA--TTCTGA-GCTGAAGGGCAAGGAGTCTACC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50516151 101 +  54856640 ACTCTTGCCAAAGTTTACTTTTTATGAACATGACAGGTAAAC-AA--AGAAT--------------CCATTGTTTAAGTCAATGACGGGA--TTCTGA-GCTGAAGGACACGGAGTCTACC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       659591 101 -   2910086 ACCCTTGCCAAAGTTTACTTTTTATGAACGTGACAGGTAAAC-AA--AGAAT--------------CCATTGTTTAAATCAATGATGGGA--TTCTGA-GCTGAAGGGCAAGGAGTCTACT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40685364 101 +  42888418 ACCCTTGCCAAAGTTTACTTTTTATGAACCTGACAGGTAAAC-AA--AGAAT--------------CCATTGTTTAAATCAATGATGGGA--TTCTGA-GCTGAAGGGCAATGAGTCTACC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             676989 117 -  36342412 ACCCTTGCCAAACTTTACTTTTTATGAATCTGGCAAATAAAC-AA-TAGCATATTTACAATTTATACAATTGTTTAAAGTTGTGATGAGAGTCTCTGA-A-TGAATGAAAAGGAGTCTACT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54451083 104 +  91889043 actcttaccaaactttactttgtatcaatctaataggtaaaa-aaatagaat-------------cccattgtttcaatgtgtgataaga--ttctcctactgaatgagAA-AAGTCTACC
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I

a score=45416.000000
s hg38.chr15_KI270850v1_alt    377999 10 +    430880 ATATGTTCTT-----------
s panTro5.chr15              63531084 10 +  83230942 ATATGTTCTT-----------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80488025 10 +  99763055 ATATGTTCTT-----------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        88324 10 -   1709092 ATATGTTCTT-----------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17248062 10 - 121039945 GTATGTTCTT-----------
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              21144832 10 -  24206276 ATACGTTCTT-----------
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        83145 10 -   1784207 ATATGTTCTT-----------
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22287368 10 + 158406734 ATATGTTCTT-----------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50516252 10 +  54856640 atatgttctt-----------
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       659692 10 -   2910086 GTATGTTCTT-----------
i cebCap1.NW_016107610v1    C 0 I 34
s aotNan1.NW_018505940v1     40685465 10 +  42888418 ATATGTTCTT-----------
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             677106 10 -  36342412 ACCTGTCTTT-----------
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54451187 19 +  91889043 --CTGTCTTTCTAACTTTTCT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e manLeu1.NW_012106908v1        75118  0 -   1397330 C
e cerAty1.NW_012002657v1        64146  0 -   1987038 C
e macNem1.NW_012011945v1        68637  0 -   2311642 C
e macFas5.chr7              108455228  0 - 171882078 C
e rheMac8.chr7               60928480  0 + 169600520 C

a score=111217.000000
s hg38.chr15_KI270850v1_alt    378009 37 +    430880 AAGATTGAGTATCT-TTCATGTTAATTGTCcctcttt-t
s panTro5.chr15              63531094 37 +  83230942 AAGATTGAGTATCT-TTCATGTTAATTGTCCCTCTTT-T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80488035 37 +  99763055 AAGATTGAGTATCT-TTCATGTTAATTGTCCCTCTTT-T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        88334 36 -   1709092 AAGATTGAGTATCT-TTCATGTTAATTGTCCC-CTTT-T
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17248072 37 - 121039945 AAGATTGAGTATCT-TTCATGTTAATTGTCCCCCTTT-T
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              21144842 33 -  24206276 AAGATTGAATATTC-----TATTAATTGTCCCCCTTT-T
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        83155 38 -   1784207 AAGATTGAATATTCTTTCATATTAATTGTCCCCCTTT-T
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22287378 37 + 158406734 AAGACTGAGTATTTTTTCACGTTAATTGTCCCCCTTT--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50516262 37 +  54856640 aagactgagtattttttcatgttaattgtcccccttc--
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40685475 38 +  42888418 AAGACTGAGTATTTTTTCACGTtaattgtccccctttc-
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             677116 34 -  36342412 AAGATTGTACATTCTTTCTTAT--GTTATcctcttt---
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54451206 36 +  91889043 AAGATTTAGCATTC--TCTCATTGGTTGTTCTGTTtt-c
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e cebCap1.NW_016107610v1       659702 34 -   2910086 I
e manLeu1.NW_012106908v1        75118  0 -   1397330 C
e cerAty1.NW_012002657v1        64146  0 -   1987038 C
e macNem1.NW_012011945v1        68637  0 -   2311642 C
e macFas5.chr7              108455228  0 - 171882078 C
e rheMac8.chr7               60928480  0 + 169600520 C

a score=243272.000000
s hg38.chr15_KI270850v1_alt    378046 43 +    430880 ccccatcatgttccccatcttagaaaacagatccacattagtg
s panTro5.chr15              63531131 43 +  83230942 CCCCATCACGTTCCCCATCTTAGAAAACAGATCCACATTAGTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80488072 43 +  99763055 CCCCATCACGTTCCCCATCTTAGAAAACAGATCCACATTAGTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        88370 43 -   1709092 Ccccatcatgttccccatcttagaaaatagatccacattagtg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17248109 43 - 121039945 CCCCATCGTGTTCCCCATCTTAGAAAATAGATCCACATTAGCG
i nomLeu3.chr6              C 0 C 0
s chlSab2.chr29              21144875 43 -  24206276 CCCCATCATGTTCCCCATCTTAGAAAATAGATCCACATTAGTG
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        83193 43 -   1784207 CCCCATCATGTTCCCCATCTTAGAAAACAGATCCACATTAGTG
i colAng1.NW_012117110v1    C 0 I 335
s calJac3.chr6               22287415 43 + 158406734 CCCCGTCATGTACCCCATCTTAGAAAACAGATCCACATTAATG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50516299 43 +  54856640 ccccgtcatgttcctcatcttagaaaacagatccacattaatg
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       659736 43 -   2910086 ccccgtcacgttccccatcttagaaaacagttccacattaatg
i cebCap1.NW_016107610v1    I 34 C 0
s aotNan1.NW_018505940v1     40685513 43 +  42888418 ccccgtcatgttccccatcttagaaaacagatccccattaatg
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             677150 43 -  36342412 ccccacaatcttctctatctcagaaaatagatccatgtaagta
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54451242 42 +  91889043 tcctactat-ccccccatcttaagaagtggatccatttaagtg
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e manLeu1.NW_012106908v1        75118  0 -   1397330 C
e cerAty1.NW_012002657v1        64146  0 -   1987038 C
e macNem1.NW_012011945v1        68637  0 -   2311642 C
e macFas5.chr7              108455228  0 - 171882078 C
e rheMac8.chr7               60928480  0 + 169600520 C

a score=47817.000000
s hg38.chr15_KI270850v1_alt    378089 12 +    430880 tgcaagacaaaa-
s panTro5.chr15              63531174 12 +  83230942 TGCAAGACAAAA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80488115 12 +  99763055 TGCAAGACAAAA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        88413 12 -   1709092 tgcaagacaaaa-
i gorGor5.CYUI01015556v1    C 0 I 2
s nomLeu3.chr6               17248152 12 - 121039945 TGCCAGAAAAAA-
i nomLeu3.chr6              C 0 I 2
s chlSab2.chr29              21144918 12 -  24206276 TGCCAGACAAAA-
i chlSab2.chr29             C 0 I 2
s calJac3.chr6               22287458 12 + 158406734 TGCCAGACAAAA-
i calJac3.chr6              C 0 I 2
s saiBol1.JH378108           50516342 12 +  54856640 tgccagacaaaa-
i saiBol1.JH378108          C 0 I 2
s cebCap1.NW_016107610v1       659779 12 -   2910086 tgccagacaaaa-
i cebCap1.NW_016107610v1    C 0 I 2
s aotNan1.NW_018505940v1     40685556 12 +  42888418 tgccagacaaaa-
i aotNan1.NW_018505940v1    C 0 I 2
s otoGar3.GL873530             677193 11 -  36342412 tact-gataaaa-
i otoGar3.GL873530          C 0 I 2
s canFam3.chr3               54451284 13 +  91889043 tgtcagacaaatt
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e colAng1.NW_012117110v1        83236 335 -   1784207 I
e manLeu1.NW_012106908v1        75118  0 -   1397330 C
e cerAty1.NW_012002657v1        64146  0 -   1987038 C
e macNem1.NW_012011945v1        68637  0 -   2311642 C
e macFas5.chr7              108455228  0 - 171882078 C
e rheMac8.chr7               60928480  0 + 169600520 C

a score=1004196.000000
s hg38.chr15_KI270850v1_alt    378101 209 +    430880 tgactcctctctcccccattccccgca--atc-----gtcttgttgaacct----aaccttgaaatttacacaaaatctgtccacttattttgtctctattattaccatactagtccaagccaaca--cac-ttctcacctgaacta-ctgcaatagcctccccta-tgttatctgtgctttaccattcaac--acttcc-caccccctggaaagccct-gtacctctt
s panTro5.chr15              63531186 207 +  83230942 tgactcctctctcccccattccccgca--atc-----gtcttgttgaacct----aaccttgaaatttacacaaaatctgtccacttattttgtctctattattaccatactagtccaagccaaca--cac-ttctcacctgaacta-ctgctatagcct--ccta-tgttatctgtgcttTACCATTCAAC--ACTTCC-CATCCCCTGGAAAGCCct-gtacctctt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80488127 207 +  99763055 tgactcctctctcccccattccccgca--atc-----gtcttgttgaacct----aaccttgaaatttacacaaaatctgtccacttattttgtctctattattaccatactagtccaagccaaca--cac-ttctcacctgaacta-ctgctatagcct--ccta-tgttatctgtgcttTACCATTCAAC--ACTTCC-CATCCCCTGGAAAGCCct-gtacctctt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        88427 208 -   1709092 tgactcctctctctcccattccccgca--atc---aagtcttgttgaacct----aaccttgaaatttacacaaaatctgtccacttattttgtctctattattaccatactagtccaagccaaca--cac-ttctcacctgaacta-ctgcaatagcct--ccta-tgttatctgtgcttTACCATTCAAC--ACTTCC-CACCCCCTGGAAAG-Cct-gtacctctt
i gorGor5.CYUI01015556v1    I 2 C 0
s nomLeu3.chr6               17248166 209 - 121039945 tgattcctctctctcccattccccaca--atc---aagtcttgttgaacct----aaccttgaaatttacacaaaatctgtccacttattttgtctctattattaccatactagtccaagccaaca--cac-ttctcacctgaacta-ctgcaatagcct--ccta-tgttatctgtgcttTAGCATTCAAC--ACTTCC-TACCCCCTGGAAAGCCCA-GTACCcctt
i nomLeu3.chr6              I 2 C 0
s chlSab2.chr29              21144932 209 -  24206276 tgattcctctctctcacattccccaca--atc---aagtcttgttgaacct----aaccttgaaatgtacacaaaatctgtccacttattttgtctctattattaccatactagtccaagccaaca--cac-ttctcacctgaacta-ctgcaacagcct--ccta-tgttatctgtgctttaccactcAAT--ACTTCC-TACCCCCTGGAAAGCCCT-GTACCCCTT
i chlSab2.chr29             I 2 C 0
s colAng1.NW_012117110v1        83571 209 -   1784207 tgattcctctctctcccattccccact--atc---aagtcttgttgaacct----aaccttgaaatttacacaaaatctgtccacttattttgtctctattattaccatactagtccaagccaaca--cac-ttctcacctgaacta-ctgcaacagcct--ccta-tgttacctgtgctttaccactcAAC--ACTTCC-TACCCCCTGGAAAGCCCT-GTACCcctc
i colAng1.NW_012117110v1    I 335 C 0
s calJac3.chr6               22287472 203 + 158406734 tgattcctctct------ttccccaca--atc---aagtcttgttgaaccta---aaccttaaaatttacacaaaa----tctacttactttgtctccgttattaccataccagtccaagacaaca--cac-tttgcacttgaactacctgcaatagctt--cctgctgttatttgtgcttTGTCATTCAAT--ACTTCCTACCCCCCTGGAAAGCCCT-GTACCCCTT
i calJac3.chr6              I 2 C 0
s saiBol1.JH378108           50516356 211 +  54856640 tgattcctttctttctcattccctaca--atc---aagtcttgttaaaccta---aaccttaaaatttacacaaaatctgtctacttaatttgtctccgttattaccataccagtccaagccaaca--cac-ttctcacctgaacta-ttgcaatagctt--cctgctgtcacttgtgctttgtcactcaac--acttcc-aacccactggaaagccct-gtacccctt
i saiBol1.JH378108          I 2 C 0
s cebCap1.NW_016107610v1       659793 207 -   2910086 tgattcctctctttctcattccccaca--gtc---aagtcttgttgaaccta---aaccttaaaatttacacaaaa----tctgtctactttgtctccgttattaccataccagtccaagccaaca--tac-ttctcacctgaacta-ttgcaatagctt--cctgctattatttgtgctttgtcactcAAC--ACTTCC-TACCCCCTGGAAAGCCCT-GTACCCCTT
i cebCap1.NW_016107610v1    I 2 C 0
s aotNan1.NW_018505940v1     40685570 210 +  42888418 tgattcctcttt--ctcattcctcaca--atc---aagtcttgttgaaccta---aaccttaaaatttacacgaaatccatctacttagtttgtctctgttattaccataccagtccaagccaaca--cactttctcacctgaacta-ctgcaatagctt--cctgctgttatttgtgctttgtcactcAAC--ACTTCC-TACCCCCTGGAAAGCCCT-GTACCCCTT
i aotNan1.NW_018505940v1    I 2 C 0
s otoGar3.GL873530             677206 197 -  36342412 tgatcctactctccccaatttcccacatcacc---aagtcccactaaacctaactaaccctaaaaagtatac-caatctgt-tagttaacttgtttccattactactatactagtttgagccaatacccat-ttcccaaccagactg-ctgccacagcct--cctg-tttcatc---------------------cttac-taccccttcaAAAGGCTTCCTACCTCAT
i otoGar3.GL873530          I 2 C 0
s canFam3.chr3               54451297 207 +  91889043 tgattctagtctctctcatccgccaca--atcagcaagtcctattgaaccc----acttctgaaattcacactaaatctgtccacttgcc--gtttctattgttcccatcctagtccaagccaaca--cat-gcctcacctggacta-cggaaacagctt--ccca---ttaactctgcttta-cacttAACATACTTCC-CATCCCACTAAAGCCTTT-CCATCCA--
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e manLeu1.NW_012106908v1        75118   0 -   1397330 C
e cerAty1.NW_012002657v1        64146   0 -   1987038 C
e macNem1.NW_012011945v1        68637   0 -   2311642 C
e macFas5.chr7              108455228   0 - 171882078 C
e rheMac8.chr7               60928480   0 + 169600520 C

a score=738420.000000
s hg38.chr15_KI270850v1_alt    378310 70 +    430880 aaacatcccaagttcaggcccacgccaaggccctgctgtttgttctgctta--atactcctgctc--tggcctt
s panTro5.chr15              63531393 70 +  83230942 aaacatcccaagttcaggcccacgccaaggccctgctgtttgttctgctta--atactcctgctc--tggcctt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80488334 70 +  99763055 aaacatcccaagttcaggcccacgccaaggccctgctgtttgttctgctta--atactcctgctc--tggcctt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        88635 70 -   1709092 aaacatcccaagttcaggcccacaccaaggccctgctgtttgttctgctta--atactcctgctc--tggcctt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17248375 70 - 121039945 aaacatcccaagttcaggcccacaccaaggccctgctgtttgttctgctta--atactcctgctc--tggcctt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60928480 72 + 169600520 aaacatcccaagttcaggcccatgccaaggtcctgctgtttgctctgcttaagatactcccgctc--tggcctt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108455228 72 - 171882078 aaacatcccaagttcaggcccatgccaaggtcctgctgtttgctctgcttaagatactcccgctc--tggcctt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        68637 72 -   2311642 aaacatcccaagttcaggcccatgccaaggtcctgctgtttgctctgcttaagatactcccgctc--tggcctt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        64146 72 -   1987038 aaacatcccaagttcaggcccatgccaaggtcctgctgtttgctctgcttaagatactcccgctc--tggcctt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21145141 72 -  24206276 AAACATCCCAAGTTCAGGCCCATGCCAAGGTCCTGCTGTTTGCTCTGCTTAAGATACTCCCGCTC--TGGCCTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        75118 72 -   1397330 aaacatcccaagttcaggcccatgccaaggtcctgctgtttgctctgcttaagatactcccgctc--tggcctt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        83780 72 -   1784207 aagcatcccaagttcaggcccatgccaaggtcctgctgtttgctctgcttaagatactcccgctc--tggcctt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22287675 74 + 158406734 AAAAATACTAAGTTTAGGTCCACACCAAGGCCCTGCTGTTTGCTCTGCTTACGATACTCCTGCTCTGTGGCCTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50516567 74 +  54856640 aaaaatcctaagttcaggtccacaccaaggccctgctgtttgctctgcttatgatactcctgctctgtggcctt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       660000 74 -   2910086 AAAAATCCTAAGTTCGGGTCCACACCAAGGCCCTGCTGTTTGCTCTGCTTATGATATTCCTGCTCTGTGGCCTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40685780 74 +  42888418 AAAAATCCTAAGTTCAGGTCCATACCAAGGCCCTGCTGTTTGCTCTGCTTATGATACTCCTGCTCTGTGGCCTT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             677403 70 -  36342412 GAATACACCAAGCTCAGCCTCAGG--AAGGCCCTGCTGGTTGCTCTGCTTGTGACACTCTTATGT--TAGTCtt
i otoGar3.GL873530          C 0 I 465
s canFam3.chr3               54451504 66 +  91889043 TCATCTACTAACTTCAGATCCATCCCACTTACCCCAGGACATTTCTACTTG------CTCTGCCC--TGGTATT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I

a score=1907408.000000
s hg38.chr15_KI270850v1_alt    378380 191 +    430880 aaaccagtttctctacatggctgactacttgttattcagtcttcagcttaaatgctactttct--gagagagaga-----cctcaattgtatgtggggcggcaatt----taatcactaacccctgcccccatcctaatcattccttatcacat---cccattgctca-gtcttcatattgctgagtataatttgaaat-tgtggcc
s panTro5.chr15              63531463 191 +  83230942 aacccagtttctctacatggctgactacttgttattcagtcttcagcttaaatgctactttct--GAGAGAGAGA-----CCTCAATTGTATGTGGGGCGGCAATT----TAATCACTAACCCCTGCCCCCATCCTAATCATTCCTTATCACAT---CCCATTGCTTA-GTCTTCATATTGCTGAGTATAATCTGAAAT-TGTggcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80488404 191 +  99763055 aacccagtttctctacatggctgactacttgttattcagtcttcagcttaaatgctactttct--GAGAGAGAGA-----CCTCAATTGTATGTGGGGCGGCAATT----TAATCACTAACCCCTGCCCCCATCCTAATCATTCCTTATCACAT---CCCATTGCTTA-GTCTTCATATTGCTGAGTATAATTTGAAAT-TGTggcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        88705 191 -   1709092 aaaccagtttctctacatggctgactacttgttattcagtcttcagcttaaatgctactttct--GAGAGAGAGA-----CCTCAATTGTATGTGGGGCGGCAATT----TAATCACTAACCCCTGCCCCCATCCTAATCATTCCTTATCACAT---CCCATTGCTTA-GTCTTCATATTGCTGAGTATAATCTGAAAT-TGTggcc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17248445 191 - 121039945 aaaccagttcctctacatggctgactacttgttattcagtcttcagcttaaatgttactttct--GAGAGAGAGA-----CCTCAATTGTATGTGGGGCAGCAATT----TAATCACTAACCCCTGCCCTCATCCTAATCATTCCTTATCACAT---CCCATTGCTTA-GTTTTCATATTGCTGAGTATAATTTGAAAT-TGTggcc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60928552 191 + 169600520 aaaccagtttctctgcatggttggctacttgttattcagtcttcagcttaaatgttattttct--gagagataga-----cctcaattgtatgtggggcggcaatt----taataacaaaccccttcccccatcctaatcattccttatcacat---cccattgctta-gttttcatattgctgagtataatttgaaat-tgtggcc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108455300 191 - 171882078 aaaccagtttctctgcatggttggctacttgttattcagtcttcagcttaaatgttattttct--gagagataga-----cctcaattgtatgtggggcggcaatt----taataacaaaccccttcccccatcctaatcattccttatcacat---cccattgctta-gttttcatattgctgagtataatttgaaat-tgtggcc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        68709 191 -   2311642 aaaccagtttctctgcatggttggctacttgttattcagtcttcagcttaaatgttattttct--gagagataga-----cctcaattgtatgtggggcggcaatt----taataacaaaccccttcccccatcctaatcattccttatcacat---cccattgctta-gttttcatattgctgagtataatttgaaat-tgtggcc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        64218 191 -   1987038 aaaccagtttctctgcatggttggctacttgttattcagtcttcagcttaaatgttattttct--gagagataga-----cctcaattgcatgtggggcagcaatt----taataacaaaccccttcccccatcctaatcattccttatcacat---cccattgctta-gttttcatattgctgagtataatttgaaat-tgtggcc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21145213 191 -  24206276 AAACCAGTTTCTCTGCATGGTTGGCTACTTGTTATTCAGTCTTCAGCTTAAATGTTATTTTCT--GAGAGATAGA-----CCTCAATTGTATGTGGGGCGGCAATT----TAATAACAAACCCCTTCCCCCATCCTAATCATTCCTTATCACAT---CCCATTGCTTA-GTTTTCATATTGCTGAGTATAATTTGAAAC-TGTggcc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        75190 191 -   1397330 aaaccagtttctctgcatggttggctacttgttattcagtcttcagcttaaatgttattttct--gagagataga-----cctcaattgcatgtggggcagcaatt----taataacaaaccccttcccccatcctaatcattccttatcacat---cccattgctta-gttttcatattgctgagtataatttgaaat-tgtggcc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        83852 191 -   1784207 aaaccagtttctctgcatggttggctacttgttattcagtcttcagcttaaatgttattttct--GAGAGATAGA-----CCTCAATTGTATGTGGGGCGGCAATT----TAATCACAAACCCCTTCCCCCATCCTAATCATTCCTTATCACAT---TCCATTGCTTA-GTTTTCATATTGCTGAGTACAATTTGAAAT-TGTggcc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22287749 185 + 158406734 AAACCAGTTTCTCTGCATGGTTGGCTACTTGTTATTCAGTCTTCAGATTAAATGTTATTTTCTGAGAGAGAGAGA-----CCTCAATTGCATGTCAGCCAGCAAGT----TAGTCAAATAA-----CCCCTATCCTA---GTTCCTTACCATAT---CCCATTGCTTA-GTTTTCATATTACTGAGTATAATTTAAAAT-TGTggcc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50516641 183 +  54856640 aaaccagtttctctgcatggttggctacttgttattcagtcttcagcttaaatgttactttct--gagagagaga-----cctcAATTGCACGTGGGCCAGCAGTT----TAATCACTAAC-----TCCCCATCCTA---ATTCCTTACCATAT---CCCCTTGCTTA-GTTTTCGTATTACTGAATATAATTTAAAAT-TGTggcc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       660074 183 -   2910086 AAACCAGTTTCTCTGCATGGTTGGCTACTTGTTATTCAGTCTTCAGCTTAAATGTTACTTTCT--GAGAGAGAGA-----CCTCAATTCCATGTGGGCCAGCAATT----TAATCACTAAC-----CCCTCATCCTA---GTTCCTTACCATAT---CCCGTTGCTTA-GTTTTCATATTACTGAGTATAATTTAAAAC-TGTggcc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40685854 182 +  42888418 AAACCAGTTTCTCTGCATGGTTGGCTACTTGTTATTCAGTATTCAGCTTAAATGTTACTTTCT--GAGAGAGAGA-----CCTCGATTGCATGTGGGCCAGCAATT----TAATCACTAA------CCCCCATCCTA---GTTCCTTACCATAT---CCCATTGCTTA-GTTTTCATATTACTGAGTATAATTTAAAAT-TGTggct
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54451570 196 +  91889043 AAATCACTTCCTTTATAAGGCTGGCTTCTCATCATTGGA-----GATATATATGCCACTTCCT--TAGAAAGAGGATCTCCCTTAACAGTATGTGAGGAAACCATTCATGCAATCACTAACCC---TCCCCATGGTG-CCATTCTTTATCATGTAGCCCCAGTCCAGAGGCTTTCATGTAACTTAGCATAACCTGAACTATGTGTCC
i canFam3.chr3              C 0 I 1730
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e otoGar3.GL873530             677473 465 -  36342412 I

a score=1805040.000000
s hg38.chr15_KI270850v1_alt    378571 190 +    430880 aggcatggtagctactgcctgtaatcctagcactttgggaggcagaggcgggtggatcacttgaagtcaggagtttaggaccagcccggccaacatggtgaaaccctgtctctaccaaaaatacaaaaattaaccagacatagtggcacatgcccatagtcccagctactcgggaggctgaggcaggaga
s panTro5.chr15              63531654 190 +  83230942 aggcatggtagctcctgcctgtaatcctagcactttgggaggcagaggcgggtggatcacctcaagtcaggagtttaggaccagcccggccaacatggtgaaaccctgtctctaccaaaaatactaaaattaaccagacatagtggcacatgcccatagtcccagctactcgggaggctgaggcaggaga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80488595 190 +  99763055 aggcatggtagctcctgcctgtaatcctagcactttgggaggcagaggcgggtggatcacctcaagtcaggagtttaggaccagcccggccaacatggtgaaaccctgtctctaccaaaaatacaaaaattaaccagacatagtggcacatgcccatagtcccagctactcgggaggccgaggcaggaga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        88896 190 -   1709092 aggcatggtagctcccgcctgtaatcccagcactttgggaggcagaggcgggtggatcacttgaagtcaggagtttaggaccagcccggccaacatggtgaaaccctgcctctaccaaaaatacaaaaattaaccagacatagtggcacatgcccatagtcccagctactcgggaggctgaggcaggaga
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17248636 190 - 121039945 aggcgtggtagctcatgcctgtaatcctagcactttgggaggcagaggcgggtggatcacttaaagtcaggagtttgggaccagcctggccaacatgatgaaaccctgtctctactaaaaatacaaaaattagccaggcatagtggcacacacccatagtcccagctactcgggaggctgaggcaggaga
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60928743 186 + 169600520 agcagtggtagctcatgcccgtaatcctagcactttgggaggcagaggtgggtggatcacttgaagtcaggagttcgggaccagcctggccaacatggtgaaacc----ctctactaaaaatacaaaaattagccaggcatagtggcacatacccatagtcccagctacttaggaggctgaggcaggaga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108455491 186 - 171882078 agcagtggtagctcatgcccgtaatcctagcactttgggaggcagaggtgggtggatcacttgaagtcaggagttcgggaccagcctggccaacatggtgaaacc----ctctactaaaaatacaaaaattagccaggcatagtggcacatacccatagtcccagctacttaggaggctgaggcaggaga
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        68900 186 -   2311642 aggagtggtagctcatgcccgtaaccctagcactttgggaggcagaggtgggtggatcacttgaagtcaggagttcgggaccagcctggccaacatggtgaaacc----ctctactaaaaatacaaaaattagccaggcatagtggcacatacccatagtcccagctacttaggaggctgaggcaggaga
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        64409 190 -   1987038 aggagtggtagctcatgctcgtaatcctagcactttgggaggcagaggtgggtggatcacttgaagtcaggagttcgggaccagcctggccaacatggtgaaaccctctctctactaaaaatacaaaaattagccaggcatagtggcacatacccatagtcccagctactcaggaggctgaggcaggaga
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21145404 190 -  24206276 aggagtggtagctcatgccggtaatcctagcactttgggaggcagaggtgggtggatcacttgaagtcaggagttcgggaccagcctggccaacatagtgaaaccctctctctactaaaaatacaaaaattagccaggcatagtggcacatacccatagtcccagctactcaggaagctgaggcaggaga
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        75381 190 -   1397330 aggagtggtagctcatgcccgtaatcctagcactttgggaggcagaggtgggtggatcatttgaagtcaggagttcgggaccagcctggccaacatggtgaaaccctctctctactaaaaatacaaaaattagccaggcatagtggcacatacccatagtcccagctactcaggaggctgaggcaggaga
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        84043 190 -   1784207 agtagtggtagctcatgcctgtaatcctagcactttgggaggcagaggcgggtggatcacttgaagtcaggagttcgggaccagcctggccaacatggtgaaaccctctctctactaaaaatacaaaaattagccaggcatggtggcacacacccatagtcccagctactcaggaggctgaggcaggaga
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22287934 182 + 158406734 tggcatggtagctcacgcctgtaatcccagcactttgggaggctgaggtgggtgcatcacttcaagtcaggagtttgggaccagcctggccaacatggtaaaaacttgtctct------aata--aaacttagctgggtgtagtggcacatgcccatagttccagctacttgggaggctgaggcaggaga
i calJac3.chr6              C 0 I 23
s saiBol1.JH378108           50516824 188 +  54856640 tggcatggtagctcacgcctataatcccagcactttgggaggctgaggcgggtggattacttgaagtcaggagtttgggaccagcctggccaacatggtgaaaacttgtctctgctaaaaata--aaaattagttgagtgtagtggcacacacccatagtttcagctacttgggaggctgaggcaggaga
i saiBol1.JH378108          C 0 I 23
s cebCap1.NW_016107610v1       660257 188 -   2910086 tggtatggttgctcacgcctgtaatcccagcactttgggaggctgaagcgggtggatcacttgaagtcaggagtttgggaccagcctggtcaacatggtgaaaccttgtctttactaaaaata--aaaattagctgggagtagtggtacatgctcatagttccaactacttgggaggctgacgcaggaga
i cebCap1.NW_016107610v1    C 0 I 223
s aotNan1.NW_018505940v1     40686036 188 +  42888418 tggcatggtagctcacgcctgtaatcccagcactttgggaggctgaggcgggtggatcacttgaagtcaggagtctgggaccagcctggccaacatggtgaaaccttgtctctactaaaaata--aaaattagctgggtgtagtggcacacgcccatagttccagctacttgcgaggctgaggcaggaga
i aotNan1.NW_018505940v1    C 0 I 609
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             677473 465 -  36342412 I

a score=492569.000000
s hg38.chr15_KI270850v1_alt    378761 65 +    430880 ggttgcagtgagccgagattgcaccactgtactccagcctgggcaacagagcaagactccaactc
s panTro5.chr15              63531844 65 +  83230942 ggttgcagtgagccgagattgcaccactgtactccaacctgggcaatagagcaagactccaactc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80488785 65 +  99763055 ggttgcagtgagccgagattgcaccactgtactccaacctgggcaatagagcaagactccaactc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        89086 65 -   1709092 ggttgcagtgagccgagattgcaccactgtactccagcctgggcaatagagcaagactccaactc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17248826 65 - 121039945 ggttgcagtgagccgagactgcgccactgtactccagcctgagcaacagagcgagactccatctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60928929 65 + 169600520 ggttgcagtgagccgggattgcgccactgtactccagcctggtcaacagagtgagactccatctc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108455677 65 - 171882078 ggttgcagtgagccggaattgcgccactgtactccagcctggtcaacagagtgagactccatctc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        69086 65 -   2311642 ggttgcagtgagccgggattgcgccactgtactccagcctggtcaacagagtgagactccatctc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        64599 65 -   1987038 ggttgcagtgacccgggattgcgcctctgtactccagcctggtcaacagagtgagactccatctc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21145594 65 -  24206276 ggttgcagtgagccgggattgtgccactgtactccagcctggtcaacagagtaagactccatctc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        75571 65 -   1397330 ggttgcagtgagccgggattgcgccactgtactccagcctggtcaacagagtgagactccatctc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        84233 65 -   1784207 ggttgcagtgagctgggattgcgccactgtactccagcctggtcaacagagtgagactccatctc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22288139 65 + 158406734 ggttgcagtgagctgagactgcaccactgtactctagcctgggcaacagagcaagactccatttc
i calJac3.chr6              I 23 C 0
s saiBol1.JH378108           50517035 65 +  54856640 ggttgcagtgagctgagactgcaccactgtactctagcctgggcaacagagcaagactccatttc
i saiBol1.JH378108          I 23 C 0
e aotNan1.NW_018505940v1     40686224 609 +  42888418 I
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e cebCap1.NW_016107610v1       660445 223 -   2910086 I
e otoGar3.GL873530             677473 465 -  36342412 I

a score=31717.000000
s hg38.chr15_KI270850v1_alt    378826 12 +    430880 c---------aaaaaaaaaaa----
s panTro5.chr15              63531909 12 +  83230942 c---------aaaaaaaaaaa----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80488850 10 +  99763055 c-----------aaaaaaaaa----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        89151 14 -   1709092 c-------aaaaaaaaaaaaa----
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17248891 21 - 121039945 caaaaaaaaaaaaaaaaaaga----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60928994 12 + 169600520 c---------aaaaaaaaaaa----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108455742 12 - 171882078 c---------aaaaaaaaaaa----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        69151 11 -   2311642 c----------aaaaaaaaaa----
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        64664 12 -   1987038 c---------aaaaaaaaaaa----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21145659 12 -  24206276 c---------aaaaaaaaaaa----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        75636 12 -   1397330 c---------aaaaaaaaaaa----
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        84298  9 -   1784207 c---------aaaaaaaa-------
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22288204 12 + 158406734 a---------aaaagaaagag----
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50517100 12 +  54856640 a---------aaaagaaagag----
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873530             677938 12 -  36342412 -------------TGGCATAACTTG
i otoGar3.GL873530          I 465 C 0
e aotNan1.NW_018505940v1     40686224 609 +  42888418 I
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e cebCap1.NW_016107610v1       660445 223 -   2910086 I

a score=6695.000000
s hg38.chr15_KI270850v1_alt    378838 1 +    430880 a
s panTro5.chr15              63531921 1 +  83230942 a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80488860 1 +  99763055 a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        89165 1 -   1709092 a
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17248912 1 - 121039945 a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60929006 1 + 169600520 a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108455754 1 - 171882078 a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        69162 1 -   2311642 a
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        64676 1 -   1987038 a
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012106908v1        75648 1 -   1397330 a
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22288216 1 + 158406734 a
i calJac3.chr6              C 0 I 86
s saiBol1.JH378108           50517112 1 +  54856640 a
i saiBol1.JH378108          C 0 I 1253
s cebCap1.NW_016107610v1       660668 1 -   2910086 a
i cebCap1.NW_016107610v1    I 223 C 0
s otoGar3.GL873530             677950 1 -  36342412 G
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1     40686224 609 +  42888418 I
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e colAng1.NW_012117110v1        84307 0 -   1784207 C
e chlSab2.chr29              21145671 0 -  24206276 C

a score=512459.000000
s hg38.chr15_KI270850v1_alt    378839 67 +    430880 a---------------------aTTGTATTAcagtcggcactccctacctgtgggttccacatctttggattcaaccaaccgcagatc
s panTro5.chr15              63531922 67 +  83230942 a---------------------aTTGTATTAcagtcggcactccctacctgtgggttccacatctttggattcaaccaaccgcagatc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80488861 67 +  99763055 a---------------------aTTGTATTAcagttggcactccctacctgtgggttccacatctttggattcaaccaaccgcagatc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        89166 67 -   1709092 a---------------------aTTGTATTAcagtcggcactccctacctgtgggttccacatctttggattcaaccaaccgcagatc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17248913 67 - 121039945 a---------------------aCTGTATTAcagttggcactccctacctgtgggttccacatctgtggattcaaccaactgcagatc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60929007 88 + 169600520 aaaaaaaaaaaaaaaaaaaaatattgtattacagttggcgctccctacctgtgggttccacatctgtggattcaaccaaccgcagatc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108455755 71 - 171882078 aaaaa-----------------aTTGTATTAcagttggcgttccctacctgtgggttccacatctgcggattcaaccaaccgcagatc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        69163 71 -   2311642 aaaaa-----------------aTTGTATTAcagttggcgctccctacctgtgggttccacatctgtggattcaaccaaccgcagatc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        64677 75 -   1987038 aaaaaaaaa-------------aTTGTTTTAcagttggcgctccctacctgtgggttccacatctgtggattcaaccaaccgcagatc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21145671 64 -  24206276 ------------------------TGTATTAcagttggcgctccctacctgtgggttccacatctgtggattcaaccaaccacagatc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        75649 68 -   1397330 aa--------------------aTTGTTTTAcagttggcgctccctacctgtgggttccacatctgtggattcaaccaaccgcagatc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        84307 66 -   1784207 ----------------------aTTGTATTAcagttggcactccctacctgtgggttccacatctgtggattcaaccaaccgcagatc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22288303 67 + 158406734 ---------------------AATTGTATTAcagtcgatcctccctacttgtgggttccacatctgtggattaaacaaatcgcatatc
i calJac3.chr6              I 86 C 0
s cebCap1.NW_016107610v1       660669 67 -   2910086 ---------------------aaTTGTATTAcagtcaaccctccctacctgtgggttccacatctatggattcaacaaaaggcatatc
i cebCap1.NW_016107610v1    C 0 C 0
s otoGar3.GL873530             677951 67 -  36342412 ---------------------AATGGTATTCTagttggccttccatatctgtgggatctgcatctatgcatttaaccaactccagatc
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1     40686224 609 +  42888418 I
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e saiBol1.JH378108           50517113 1253 +  54856640 I

a score=2272388.000000
s hg38.chr15_KI270850v1_alt    378906 270 +    430880 aaaagtattttttaaaa---tgtgtccatattaaacatgtacaga----tttgtcagtattcccgaaacaatacagt---ataact-----------atttacactgca-ttaggta---taagtaat---ctagaga-----taaagtatatataaaggaggacatgcatgggttagatgcaaatactgtaccattttacatcagggacttcggcatttgtggatttgggttatgcacaggaggtcctg----gattccctaaagataactagggacaa--cttttgcttctact--ccaccgtatttct------------------------------------------
s panTro5.chr15              63531989 270 +  83230942 agaagtattttttaaaa---tgtgtccatattaaacatgtacaga----tttgtcagtattcccgaaacaatacagt---ataact-----------atttacactgca-ttaggta---taagtaat---ctagaga-----taaagtatatataaaggaggacatgcatgggttagatgcaaatactgtaccattttacatcagggacttcggcatttgtggatttgggtcatgcacaggaggtcctg----gattccctaaagataactagggacaa--ctTTTGTTTCTACT--CCACCATATTTCT------------------------------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80488928 270 +  99763055 agaagtattttttaaaa---tgtgtccatattaaacatgtacaga----tttgtcagtattcccgaaacaatacagt---ataact-----------atttacactgca-ttaggta---taagtaat---ctagaga-----taaagtatatataaaggaggacatgcatgggttagatgcaaatactgtaccattttacatcagggacttcggcatttgtggatttgggttatgcacaggaggtcctg----gattccctaaagataactagggacaa--ctTTTGTTTCTACT--CCACCATATTTCT------------------------------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        89233 275 -   1709092 aaaagtattttttaaaa---tgtgtccatattaaacatgtacaga----tttgtcagtattcctgaaacaatacagt---ataact-----------atttacactgca-ttaggta---taagtaat---ctagagatagtttaaagtatatataaaggaagacatgcatgggttagatgcaaatactgtacaattttacatcagggacttcggcatttgtggatttgggttatgcacaggagatcctg----gattccctaaagataactagggacaa--ctTTTGTTTCTACT--CCACCATATTTCT------------------------------------------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17248980 277 - 121039945 aaaaatattttttaaaa---tgtgtccatattaaac--gtacagatttttttgtcagtattcccgaaacaatacagt---ataact-----------atttacactgcatttaggta---taagtaat---ctagagatagtttaaagtatatataatggaggacatgcatgggttaggtgcaaatactgtaccattttacatcagggacttcggcatctgtggatttgagt-atgcacaggaggtcttg----gattccctacagataactagggacaa--ctTTTGTTTCTACT--CCACCATATTTCT------------------------------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60929095 274 + 169600520 aaaaatattttttaaaa---tgtgtccgcattaaacatgtacagattttttggtcagtattccct-aacaatacagt---ataact-----------atttacattgca-ttagata---taagtaat---ctagagatggtttaaagtatatacacaggaggacatgcatgggttagatacaaatactgtaccattttacatcagggacttcgacatctgtggatttcggt-atgcacaggaggtcctg----gattccctacagataaccagggacaa--cttctgtttctgct--cca---tatttct------------------------------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108455826 274 - 171882078 aaaaatattttttaaaa---tgtgtccgcattaaacatgtacagatttttttgtcagtattccct-aacaatacagt---ataact-----------atttacattgca-ttagata---taagtaat---ctagagatggtttaaagtacatacacaggaggacatgcatgggttagatacaaatactgtaccattttacatcagggacttcgacatctgtggatttcggt-atgcacaggaggtcctg----gattccctacagataaccagggacaa--cttctgtttctgct--cca---tatttct------------------------------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        69234 274 -   2311642 aaaaatattttttaaaa---tgtgtccacattaaacatgtacagatttttttgtcagtattccct-aacaatacagt---ataaat-----------atttacattgca-ttagata---taagtaat---ctagagatggtttaaagtatatacacaggaggacatgcatgggttagatacaaatactgtaccattttacatcagggacttcgacatctgtggatttcggt-atgcacaggaggtcctg----gattccctacagataaccagggacaa--cttctgtttctgct--cca---tatttct------------------------------------------
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        64752 274 -   1987038 aaaaatattttttaaaa---tgtgtccgcattaaacatgtacagatttttttgtcagtattccct-aacaatacagt---ataact-----------atttacattgca-ttagata---taagtaat---ctagagatggtttaaagtatatacacaggaggacatgcatgggttagatacaaatactgtaccattttacatcagggacttcgacatctgtggatttcggt-atgcacaggaggtcctg----gattccctacagataaccagggacaa--cttctgtttctgct--cca---tatttct------------------------------------------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21145735 274 -  24206276 aaaaatattttttaaaa---tgtgtccgcattaaacatgtacagatttttttgtcagtattccct-aacaatacagt---ataact-----------atttacattgca-ttagata---taagtaat---ctagagatggtttaaagtatatacacaggaggacatgcatgggttagatacaaatactgtaccattttacatcaggaacttcgacatctgtggatttcggt-atgcacaggaggtcctg----gattccctacagataaccagggacaa--ctTTTGTTTCTGCT--CCA---TATTTCT------------------------------------------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        75717 272 -   1397330 aaaaatattttttaaaa---tgtgtccacattaaacatgtacaga--tttttgtcagtattccct-aacaatacagt---ataact-----------atttacattgca-ttagata---taagtaat---ctagagatggtttaaagtatatacacaggaggacatgcatgggttagatacaaatactgtaccattttacatcagggacttcgacatctgtggatttcggt-atgcacaggaggtcctg----gattccctacagataaccagggacaa--cttctgtttctgct--cca---tatttct------------------------------------------
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        84373 280 -   1784207 aaaaatattttttaaaa---tgtgtccgcattaaacatgtacagatttttttgtcagtattccct-aacaatacagt---ataact-----------atttacattgca-ttagata---taagtaatctactagagatggtttaaagtacatacacaggagaagatgcataggttagatacaaatactgtaccattttacatcagggacttcgacatctgtggatttgggt-atgcacaggaggtcctg----gattccctacagataaccagggacga--ctTTTGTTTCTGCT--CCACCGTATTTCT------------------------------------------
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22288370 271 + 158406734 aaaaata-ttttttaaa---tgcatccatattacacacatacaga----tttgtcagtattccctaaacaatacagt---gtaact-----------atttatattgaa-ttaggtg---taagtaat---ctagagatgatttaaagtagatatacaggaagacatgt--gggttatatgcaaatactgtaccattttacatcagggacttcagcatctgtggatttgggt-atgcacaggaggtcctg----gatcccctacaaataaccagggaaaa--ctTTTGTTTCTACT--CCACTATATGTCT------------------------------------------
i calJac3.chr6              C 0 I 19
s cebCap1.NW_016107610v1       660736 266 -   2910086 aaaaatatttttttaaa---tgcatccgtattacacacatacaga----tttgtcagtattccctaaacaatacag---------t-----------atttacattgca-ctaggtg---taagtaat---ctagagatgatttaaagtatatatacaggaagacatgc--aggttatatgcaaatactgtaccattttacatcggggacttcagcatctgtggatttgggt-atgcacaggaggtcctg----gatcctctacaaataaccagggaaaa--ctTTTGTTTCTACT--CCACCATACGTCT------------------------------------------
i cebCap1.NW_016107610v1    C 0 I 19
s aotNan1.NW_018505940v1     40686833 272 +  42888418 aaaagtatttttaaaaa---tgcacccatattacacacatacaga----tttgtcagtattccctaaacaatacggt---ataact-----------atttacattgca-ttaggtg---taagtaat---ctagagatgatttaaagtatatatacaggaagacatgc--gggttatatgcaaatactgtaccattttacatcagggacttcagcatctgtggatgtggac-atgcacagaaggtcctg----gatcccctacaaataatcagggaaaa--ctTTTGTTTCTACT--CCACTATACGTCT------------------------------------------
i aotNan1.NW_018505940v1    I 609 I 19
s otoGar3.GL873530             678018 334 -  36342412 aaaaatatttagaaaaaaactacatttgcattaaa----tacttttttccttgtcattatcccctagacaatacagtatcataactatttatatggcatttacattgca-ttgggtattgtaagtaac---atacagatgatttaa-------atatgggagaatgtacccaggtcatatgcaaatactatgccattttataacagggacttgagcacctatg---tttggt-aactgagtgaggtccaaaaccaatcccccaaagataacaagagatgactCTTTTCTTTTTACTTCCTACCATACTTACAAAGTCACATTATATGTGACTTCATCGTAGTCACATAACAGT
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e saiBol1.JH378108           50517113 1253 +  54856640 I

a score=3144900.000000
s hg38.chr15_KI270850v1_alt    379176 356 +    430880 tcatagcttttctacaggagagcagacacagtatctgca----------------------------------------cttttcacatctgtattcacaacatctagaagagtTT-ATTAG-TGTTGACTAAAAGAAGTGCAGAATAG-----------------------------TCTTTTCCTATGTGTCCCCTCAT--CCCTTTG-ACaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaCAGTTG-----TT-AGTCTCATTAATTCCTAAGAAAACTCTG-TAATTCAAGAAAGTTAACCTTCTGTTACCCATTACACATA--TTTTTTCCTCCTTGGtcacatattta------aattatataattcaatgg-tttttaatacatctagaattctgcaattgttacaattttagagcattccatcatccccaaaagaaac
s panTro5.chr15              63532259 345 +  83230942 TCATAGCTTTTCTACAGGAGAGCAGACACAGTATCTGCA----------------------------------------CTTTTCACATCTGTATTCACAACATCTAGAAGAGTTT-ATCAG-TGTTGACTAAAAGAAGTGCAGAATAG-----------------------------TCTTTTCCTATGTGTCCCCTTAT--CCGTTTG-AC-----------aaaaaaaaaaaaaaaaaaaCAGTTG-----TT-AGTCTCATTAATTCCTAAGAAAACTCTG-TAATTCAAGAAAGTTAACCTTCTGTTACCCATTACACATA--CTTTTTCCTCCTTGGtcacatattta------aattatataattcaatgg-tttttaatacatctagaattctgcaattgttacaattttagagcattccatcatccccaaaagaaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80489198 346 +  99763055 TCATAGCTTTTCTACAGGAGAGCAGACACAGTATCTGCA----------------------------------------CTTTTCACATCTGTATTCACAACATCTAGAAGAGTTT-ATCAG-TGTTGACTAAAAGAAGTGCAGAATAG-----------------------------TCTTTTCCTATGTGTCCCCTTAT--CCGTTTG-AC----------aaaaaaaaaaaaaaaaaaaCCAGTTG-----TT-AGTCTCATTAATTCCTAAGAAAACTCTG-TAATTCAAGAAAGTTAACCTTCTGTTACCCATTACACATA--CTTTTTCCTCCTTGGtcatatattta------aattatataattcaatgg-tttttaatacatctagaattctgcaattgttacaattttagagcattccatcatccccaaaagaaac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        89508 337 -   1709092 TCATAGCTTTTCTACAGGAGAGCAGACACAGTATCTGCA----------------------------------------CTTTTCACATCTGTATTCACAACATCTAGAAGAGTTT-ATTAG-TGTTGACTAAAAGAAGTGCAGAATAG-----------------------------TCTTTTCCTATGTGTCCCCTCAT--CACTCTG-AC-----------AAAAAAAAAAAA--------AGTTG-----TT-AGTCTCATTAATTCCTAAGAAAACTCTG-TAATTCAAGAAAGTTAACTTTCTGTTACCCATTACACATA--TTTTTTCCTCCTTGGtcacatattta------aattatataattcaatgg-tttttaatacatccagaattctgcagttgttacaattttagagcattccatcatccccaaaagaaac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17249257 334 - 121039945 TCATAGCTTTTCTACAGGAGAGCAGACACAGTGTCTGCC----------------------------------------CTTTTCACGTCTGTATTCACAACATCTAGAAGAATTT-ATTAG-TGTCGACTAAAAGAAGTGCAGAATAG-----------------------------TTTTTTCATATGTGTCCCCTCAT--CCCTTTG-AC-----------AAAAGAAAAAA---------AGTTG-----TT-AGTCTCATTAATTCCTAAGAAAA--CTG-TAATTTAAGAAAGTTAACCTTCTGTTACCCATTACACATA--TTTTTTCCTCCTTGGtcacatattta------aattatataattcagtgg-tttttaatacatccagaattctgcaattgttacaattttagagcattccatcatccccaaaagaaac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60929369 335 + 169600520 tcatagcttttctacaggagagcagacacagtgtctgcc----------------------------------------cttttcacgtttgtattcacaacatctagaagagCTT-ATTAG-TGTTGACTAAAAGAAGTACAGAACAG-----------------------------TCTTTTCATATGTGTCCCCCCAT--CCCTTTG-A------------AAAAAAAAA-----------AGTTG-----TTAAGTCTCATTAATTCCTAAGAAAACTCTGTTAATTTAAGAAAGTTAACCTTCTGTTACCCATTACACATA--TTTTTTCCTCCTTGGtcacatattta------aattatataattcaatgg-tttttaatacatccagaattctgcaatggttacaattttagagcattccatcatccccaaatgaaac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108456100 332 - 171882078 tcatagcttttctacaggagagcagacacagtgtctgcc----------------------------------------cttttcacgtttgtattcacaacatctagaagagCTT-ATTAG-TGTTGACTAAAAGAAGTACAGAACAG-----------------------------TCTTTTC--ATGTGTCCCCCCAT--CCCTTTG-A------------AAAAAAAAA-----------AGTTG-----TT-AGTCTCATTAATTCCTAAGAAAACTCTGTTAATTTAAGAAAGTTAACCTTCTGTTACCCATTACACATA--TTTTTTCCTCCTTGGtcacatattta------aattatataattcaatgg-tttttaatacatccagaattctgcaatggttacaattttagagcattccatcatccccaaatgaaac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        69508 333 -   2311642 tcatagcttttctacaggagagcagacacagtgtctgcc----------------------------------------cttttcacgtctgtattcacaacatctagaagagCTT-ATTAG-TGTTGACTAAAAGAAGTACAGAACAG-----------------------------TCTTTTCATATGTGTCCCCCCAT--CCCTTTG--------------AAAAAAAAA-----------AGTTG-----TT-AGTCTCATTAATTCCTAAGAAAACTCTGTTAATTTAAGAAAGTTAACCTTCTGTTACCCATTACACATA--TTTTTTCCTCCTTGGtcacatattta------aattatataattcaatgg-tttttaatacatccagaattctgcaatggttacaattttagagcattccatcatccccaaatgaaac
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        65026 333 -   1987038 tcatagcttttctacaggagagcagacacagtgtctgcc----------------------------------------cttttcacgtctgtattcacaacatctagaagagCTT-ATTAG-TGTTGACTAAAGGAAGTACAGAACAG-----------------------------TCTTTTCATATGTGTCCCCCCAT--CCCTTTG--------------AAAAAAAAA-----------AGTTG-----TT-AGTCTCATTAATTCCTAAGAAAACTCTGTTAATTTAAGAAAGTTAACCTTCTGTTACCCATTACACATA--TTTTTTCCTCCTTGGtcacatattta------aattatgtaattcaatgg-tttttaatacatccagaattctgcaatggttacaattttagagcattctatcatccccaaatgaaac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21146009 334 -  24206276 TCATAGCTTTTCTACAGGAGAGCAGACACAGTGTCTGCC----------------------------------------CTTTTCACGTCTGTATTCACAACATCTAGAAGAGCTT-ATTAG-TGTTGACTAAAAGAAGTACAGAACAG-----------------------------TCTTTTCATATGTGTCCCCCCAT--CCCTTTG-A------------AAAAAAAAA-----------AGTTG-----TT-AGTCTCATTAATTCCTAAGAAAACTCTGTTAATTTAAGAAAATTAACCTTCTGTTACCCATTACACATA--TTTTTTCCTCCTTGGtcacatattta------aattatataattcaatgg-tttttaatacatacagaattctgcaatggttacaattttagagcattccatcatccccaaatgaaac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        75989 333 -   1397330 tcatagcttttctacaggagagcagacacagtgtctgcc----------------------------------------cttttcacgtctgtattcacaacatctagaagagCTT-ATTAG-TGTTGACTAAAAGAAGTACAGAACAG-----------------------------TCTTTTCATATGTGTCCCCCCAT--CCCTTTG--------------AAAAAAAAA-----------AGTTG-----TT-AGTCTCATTAATTCCTAAGAAAACTCTGTTAATTTAAGAAAGTTAACCTTCTGTTACCCATTACACATA--TTTTTTCCTCCTTGGtcacatattta------aattatgtaattcaatgg-tttttaatacatccagaattctgcaatggttacaattttagagcattctatcatccccaaatgaaac
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        84653 334 -   1784207 TCATAGCTTTTCTACAGGAGAGCAGACACAGTGTCTGCC----------------------------------------CTTTTCACGTCTGTATTCACAACATCTATAAGAGCTT-ATTAG-TGTTGACTAAAAAAAGTACAGAACAG-----------------------------TCTTTTCATATGTGTCCCCCCAT--CCCTTTGAA------------AAAAAAAAA-----------AGTTG-----TT-AGTCTCATTAATTCCT-AGAAAACTCTGTTAATTTAAGAAAGTTAACCTTCTGTTACCCATTACACATA--TTTTTTCCTCCTTGGtcacatattta------cattatataattcaatgg-tttttaatacatccagaattctgcaatggttacaattttagagcattccatcatccccaaatgaaac
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22288660 351 + 158406734 TCGTAGCTTTTCTACaggacagaagacacagtatctgcc----------------------------------------ctgttcacatctgtatccataacacctagaacagtTT-ATTAGGTGTTG----AAAGAAGTGCAGAACAGTTGTGTGTGGTTTTTTTTTTTTAACAGTTTTTTTTCATATGTGTCCCCC-----GCTTTTA--------------AAAAGAAAA-----------AGTTG---------GTCTCATTAATTCCTAAGAAAACTCTT-T-----AAGAAAGTTAACCTACTGTTACCCATTACACAGATTTTTTTTCCTCCTTAGTCAC--attcacc---taattatataattcaatggttttttaatacattcagaattctggaatcattacaattttagtgtactccatcatccccaaaagaaac
i calJac3.chr6              I 19 C 0
s saiBol1.JH378108           50518366 374 +  54856640 TCGTAGCTTTTCTACaggacagaagacacagtatttgccctgttcacatctgtatccacaacacctagaacagtTTATACtgttcacatctgtatccacaacacctagaacagtTT-ATTAGATGTTGACTAAAAGAAGTGCAGAACAG-----------------------------TCTTTTCATATGCGTCCCCCCACCAACTTTTA--------------AGAAGATAA-----------AGTTG-----TT-AGTCTCATTAATTCCTAAGAAAACTCTT-T-----AAGAAAGTTAACCTACAGTTACCCATCACACAGA-TTTTTTTCCTCCTTGGTCACATattcacc---taattatataattcaatga-tttttaatacattcagaattctggaatcattacaattttagtgtactccatcatccccaaaagaaac
i saiBol1.JH378108          I 1253 C 0
s cebCap1.NW_016107610v1       661021 352 -   2910086 TCGTAGCTTTTCTACaggacagaagacacagttactgcc----------------------------------------ctgttcacatctgtatccataacacctagaacagtTT-ATTAGGTGTTGACTAAAAGAAGTGCAGAACAGTTTTTTTTGTTTGTTTTTGCAGAACAG--TCTTTTCATATGTGTCCCCC-----GCTTTTA--------------AAAAGAAAA-----------AGTTG-----TT-AGTCTCATTAATTTCTAAGAAAACTCTT-T---------AAGTTAACCTACTGTTACCCATTACACAGA-TTTTTTTCCTCCTTGGTCACACattcacc---taattatataattcaatgg-tttttaatacattcagaattctggaatcgttacaattttagtgtactccatcatccccaaaagaaac
i cebCap1.NW_016107610v1    I 19 C 0
s aotNan1.NW_018505940v1     40687124 350 +  42888418 TCGTAGCTTTTCTACAGGACAGAAGACACAGtatctgcc----------------------------------------ctgttcacatctgtatccataacagctagaacagtTT-ATTAGGTATTGACTAAAAGAAGTGCAGAACAGTTTTCT-------TTTTTCCAGAACAG--TCTTTTCATATGTGTCCCCC-----CCCTTTT--------------AAA----AA-----------AGTTG-----TT-AGTCTCATTAATTCCTAAGAAAACTCTT-TGATTTAAGAAAGTTAACCTACTGTTACCCATTACACAGA-TTTTTTTCCTCCTTGGTCACATattcacc---taattatataattcaatgg-tttttaatacattcagaattctggaatcattacaattttagtgtactctatcatccccaaaagaaac
i aotNan1.NW_018505940v1    I 19 C 0
s otoGar3.GL873530             678352 326 -  36342412 TCATAGCTTTTCTACAGTACAACAGACAC--TGTCTGCC----------------------------------------CTGCTCACATCTGTAT-CACAACAGCTCTAACAGTTTAATTATGTGCTGACTAAAAGAAACG-------------------------------------TCTTTTTATAAGTGTCCCCCAGC--CACTTTT--------------AAA-----------------AGTTGGGGCATC-AGTCTCATTAATTCCTAAGAACATCCTA-TAATTTAAGAAAGTTAAC--TCTGTTACACATTACAATTA--TTTTTCCCTTCTGGGTCACACattcacccatttgttatacaattaaacag-ttttcaatatagccatagctctgaaatcactacaattttataatattccatcacccgaaaaagaaac
i otoGar3.GL873530          C 0 I 7042
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I

a score=669021.000000
s hg38.chr15_KI270850v1_alt    379532 76 +    430880 ctgtatccTTtcagacaagatcaggcacactcagggtggtatggctatagacAGAAACCTGTATCCTTTCAGCAGT
s panTro5.chr15              63532604 76 +  83230942 ctgtatccTTtcagacaagatcaggcacactcagggtggtatggctatagacAGAAACCTGTATCTTTTCAGCAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80489544 76 +  99763055 ctgtatccTTtcagacaagatcaggcacactcagggtggtatggctatagacAGAAACCTGTATCCTTTCAGCAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        89845 76 -   1709092 ctgtacccTTtcagacaagatcaggcacactcagggtggtatggccatagacAGAAACCTGTATCCTTTTAGCAGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17249591 76 - 121039945 ctgtatccTTtcagacaagatcagccacactcagggtggtatggccatagacAGAAATCTGTATCCTTTCAGCAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60929704 75 + 169600520 ACGCATCCTTtcagatgagatcaggtgcgatcacagtggtatggccatagacAGAAA-CTGTATCCTTTCAGCAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108456432 75 - 171882078 ACGCATCCTTtcagatgagatcaggtgcgatcacagtggtatggccatagacAGAAA-CTGTATCCTTTCAGCAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        69841 75 -   2311642 ACACATCCTTtcagatgagatcaggtgcgatcacagtggtatggccatagacAGAAA-CTGTATCCTTTCAGCAGT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        65359 75 -   1987038 acgtatccTTtcagatgagatcaggtgggatcacagtggtatggccgtagacAGAAA-CTGTATCCTTTCAGCAGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21146343 75 -  24206276 acgtatccTTtcagatgagatcaggtgcgatcacagtggtatggccatagacAGAAA-CTGTATCCTTTCAGCAGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        76322 75 -   1397330 acgtatccTTtcagatgagatcaggtgggatcacagtggtatggccgtagacAGAAA-CTGTATCCTTTCAGCAGT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        84987 75 -   1784207 acctatccTTtcaaatgagatcaggtgtgatcacggtggtatggccatagacAGAAA-CTGTATCCTTTCAGCAGT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22289011 76 + 158406734 ctgtatccTTTCAGACGGGATCAGGTACACTCAGGGTGATAAAGCTGTAGACAGAAACCTGTATCCTTTCATCAGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50518740 76 +  54856640 ctgtatccTTtcagacgagatcaggcacactcagggtggtatggctgtagacAGAAACCTGTATCCTTTCAACAGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       661373 76 -   2910086 ctgtatccTTtcagacgaggtcaggcacactcagggtggtatggctgtaggcAGAAACCTGTATCCTTTCAGCAGT
i cebCap1.NW_016107610v1    C 0 I 3239
s aotNan1.NW_018505940v1     40687474 76 +  42888418 ctgtatccTTtcagacgagatcaggcacactcagggtggtatggctgtagacAGAAACTTGCATCCTTTCAGCAGT
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             678678 7042 -  36342412 I

a score=579510.000000
s hg38.chr15_KI270850v1_alt    379608  83 +    430880 CACTCTCTGGGGA-----tttttt--------------tttaagttcagcg----atgtgcaggtttgttatatgagtaaactcgt-------gaatttgttgtacaga--------ttat
s panTro5.chr15              63532680  86 +  83230942 CACTCTCTGGGGA------ttttt--------------tttaagttcagcgatacatgtgcaggtttgttatatgagtaaactcgt-------gaatttgttgtacaga--------ttat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80489620  86 +  99763055 CACTCTCTGGGGA------ttttt--------------tttaagttcagcgatacatgtgcaggtttgttatatgagtaaactcgt-------gaatttgttgtacaga--------ttat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        89921  86 -   1709092 CACTCTCTGGGGA------ttttt--------------tttaagttcagcgatacatgtgcaggtttgttatatgagtaaactcgt-------gaatttgttgtacaga--------ttat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17249667  86 - 121039945 CGCTCTCTGGGGA------ttttt--------------ttttagttcagcgatacatgtgtaggtttgttgtatgagtaaactcgt-------gaatttgttgtacaga--------ttat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60929779  91 + 169600520 CTGTCGCTAGGGa----ttttttt--------------tttaagttcagcgatacatatgcaggtttgttatatgggtaaactcgtgtcacaggaatttgttgtacaga------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108456507  91 - 171882078 CTGTCGCTAGGGa----ttttttt--------------tttaagttcagcgatacatatgcaggtttgttatatgggtaaactcgtgtcacaggaatttgttgtacaga------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        69916  91 -   2311642 CTGTCGCTAGGGa----ttttttt--------------tttaagttcagcgatacatatgcaggtttgttatatgggtaaactcgtgtcacaggaatttgttgtacaga------------
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        65434  91 -   1987038 CTCTCGCTAGGGa----ttttttt--------------tttaagttcagcgatacatatgcaggtttgttatatgggtaaactcgtgtcacaggaatttgttgtacaga------------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21146418  93 -  24206276 CGCTTGCTAGGGA--CTTtttttt--------------tttaagttcagcgatacatacacaggtttgttatacgggtaaactcgtgtcacaggaatttgttgtacaga------------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        76397  96 -   1397330 CTCTCCCTAGGGA---TTtttttt--------------tttaagttcagcgatacatatgcaggtttgttatatgggtcaactcgtgtcacaggaatttgttgtacagattat--------
i manLeu1.NW_012106908v1    C 0 I 12243
s colAng1.NW_012117110v1        85062  93 -   1784207 CGCTCGCTAGGGA------ttttt--------------tttaagttcagcgatacatatgcaggtttgttatatgggtaaactcatgtcacaggaatttgttgtacaga----ctat----
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22289087 103 + 158406734 TGCTCTCTGGGAATTTTTTTTTTT----AACA------tttaagttcagtggtacatgtgcaggtttgttacgcaggtaaactcatgtcacaggaatttgctgtacaga--------ttat
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50518816 107 +  54856640 TGCTCTCTGGGAGTTttttgtttttttaaaca------tttaagttcagtggtacatgtgcaggtttgctacatgggtaaactcatgtcacaggaatttgttgtacaga--------ttat
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40687550 105 +  42888418 TGCTCT----GAATTTTttttttt----aaaaaaacattttaagttcagtggtacatatgcaggtttgttacatggctaaactcatgtcacaggaatttgttgtataga--------ttat
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e cebCap1.NW_016107610v1       661449 3239 -   2910086 I
e otoGar3.GL873530             678678 7042 -  36342412 I

a score=12156772.000000
s hg38.chr15_KI270850v1_alt    379691 1813 +    430880 tttatcacccaggtgtcaagtccagtacccaatgcttgtttttt--ctgatcctctcccttctcccacccaacatcctcaaatgggcacccaacaccctcaaatgggcaccagtgtctat------tgttcccttctttgtgtccat-atgtccttatcatttagctcccagttgtgagaacatgtggta-tttgattttgtgatcctgtgttagtttgctaaggattatggcctccagctccacccatgtt-cctgcaaaggacatgatctc---cttcttcacggctgtgtgtagtattccatggtgtatacatactacattttctttatccagcctatcattgacaggcatttaggttgattccatgtttttgctattgtgaatagcactgcaatg--------aacatatgtgtgcatgtgtttttatggtaaaacgatttatattccttttggtacatactcagcaatgggattgctgggttgaatggaagttgtgtttttagctc-tttgaagaatcactacacta-ttttccacaatggctgaactaatttacattccc-accaacagtgtgtaagcgttcccttttcccccccgccacaatcttaccagcatctattatttaactttttaattgtagccatcctgactggtgtgaggtagtaacttactgtggttttgattttcatttgttttttgttttgttgtgttgtgacacgaagtcttgctctgtcacccagacttgagtgcagtggcacaatctcggctcaccgcaacctctgcctcccaggttcaaatgattctcatgcctcagcctcccgagtagctgaaattactacgggcgcctgccaccatgcccagctaatttttgtaatttttagtagagacagggcttcactatgtttggccaggctggtctcaaactcctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattgtaggcatgagtcactgtgcccagcttgattttc-tctctccaatgatcagttataaagctttttt--catatgcttgttgtccacatgtatgtcttcttttgaaaagtgtct-attcatgtcctttTCAGGACACTATCATttccctctaacctctcccacccctaagcaaccatgaatctattttctgtctctacagatttacctattctgga-tattgcacataaattagatcatacaata-tttaaaa--attttttcacttagcatgttt------ttaagattcatcattgttttagtttgtatcagaac------------------ttt-tttt-------------------tttttttttttaagacaggg----tcttaatctgtcacccaggctggagtgcaagtggcactatcttggctcactgcaacctccacttcccaggttcaagccat----cctcccacctcacccttctaattagctgaagctacaggcgtgtgccaccacatccagctaatttttgtattttttgtagagatagggttttgccatatttcccaggctggtctcgaactctggctcaattgatccgcccgcctcagcctcccaaagtgcttggattacaagcaggagccaccacgcccagccagaacttcagttatttttattgccaaataacattttattgaatggatatatatatgggtataccctggagacactgcaggttcagttgcagaccacctcaaagtgaatactacaata----gag--tcacaacctttttggtttcccagtgcacatggaagttgtttttaggccaggcatggtggctcacgcctgtattcctag--cactttgggaggcagagatgggcggatcacttgagctcatgagtttgagaccagcctagg
s panTro5.chr15              63532766 1811 +  83230942 tttatcacccaggtgtcaagtccagtacccaatgcttgtttttt--ctgatcctctcccttctcccacccaacatcctcaaatgggcacccaacaccctcaaatgggcaccagtgtctat------tgttcccttctttgtgtccat-atgtccttatcatttagctcccagttgtgagaacatgtggta-tttgattttgtgatcctgtgttagtttgctaaggattatggcctccagctccacccatgtt-cctgcaaaggacatgatctc---cttcttcacggctgtgtgtagtattccatggtgtatacataccacattttctttatccagcctatcattgacaggcatttaggttgattccatgtttttgctattgtgaatagcactgcaatg--------aacatatgtgtgcatgtgtttttatggtaaaacgatttatattccttttggtacatactcagcaatgggattgctgggttgaatggaagttgtgtttttagctc-tttgaagaatcactacacta-ttttccacaatggctgaactaatttacattccc-accaacagtgtgtaagcattcccttcccccccccgccacaatcttaccagcatctattatttaactttttaattgtagccatcctgactgctgtgaggtagtaacttactgtggttttgattttcatttgttttttgttttgttgtgttgtgacatgaagtcttgctctgtcacccaggctggagtgcagtggcacaatctcggctcaccgcaacctctgcctcccaggttcaaatgattctcatgcctcagcctcccgagtagctgaaattactacaggcgcctgccaccatgcccagctaatttttgtaatttttagtagagacagggcttcactatgtttggccaggctggtctcaaactcctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattataggcatgagtcactgtgcccagcttgattttc-tctctccaatgatcagttataaagctttttt--catatgcttgttgtccatatgtatgtcttcttttgaaaagtgtct-attcatgtcctttTCAGGACACTATCATttccctctaacctctcccacccctaagcaaccatgaatctattttctgtctctacagatttacctattctgga-tattgcacataaattagatcatacaata-tttaaaa--tttttttcacttagcatgttt------ttaagattcatcatggttttagtttgcatcagaac--------------------t-tttt-------------------ttttttttttaaagacaggg----tcttaatctgtcacccaggctggagtgcaagtggcactatcttggctcactgcaacctccacttcccaggttcaagccat----cctcccacctcacccttctaattagctgaagctacaggcgtgtgccaccacatccggctaatttttgtattttttgtagagatagggttttgccatatttcccaggctggtctcaaactctggctcaattgatctgcccgcctcagcctcccaaagtgcttggattacaagcaggagccaccacgcccagccagaacttcagttatttttattgccaaataacattttattgaatggatatatatatgggtataccctggagacactgcaggttcagttccagaccacctcaaagtgaatattgcaata----gag--tcacaacctttttggtttcccagtgcatatggaagttgtttttaggccaggcatggtggctcacgcctgtattcctag--cactttgggaggccgagatgggcggatcacttgagctcatgagtttgagaccagcctagg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80489706 1808 +  99763055 tttatcacccaggtgtcaagtccagtacccaatgcttgtttttt--ctgatcctctcccttctcccacccaacatcctcaaatgggcacccaacaccctcaaatgggcaccagtgtctat------tgttcccttctttgtgtccat-atgtccttatcatttagctcccagttgtgagaacatgtggta-tttgattttgtgatcctgtgttagtttgctaaggattatggcctccagctccacccatgtt-cctgcaaaggacatgatctc---cttcttcacggctgtgtgtagtattccatggtgtatacataccacattttctttatccagcctatcattgacaggcatttaggttgattccatgtttttgctattgtgaatagcactgcaatg--------aacatatgtgtgcatgtgtttttatggtaaaacgatttatattccttttggtacatactcagcaatgggattgctgggttgaatggaagttgtgtttttagctc-tttgaagaatcactacacta-ttttccacaatggctgaactaatttacattccc-accaacagtgtgtaagcgttcccttt--ccccccgccacaatcttaccagcatctattatttaactttttaattgtagccatcctgactggtgtgaggtagtaacttactgtggttttgattttcatttgttttttgttttgttgtgttgtgacatgaagtcttgctctgtcacccaggctggagtgcagtggcacaatctcggctcaccgcaacctctgcctcccaggttcaaatgattctcatgcctcagcctcccgagtagctgaaattactacaggcgcctgccaccatgcccagctaatttttgtaatttttagtagagacagggcttcactatgtttggccaggctggtctcaaactcctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattataggcatgagtcactgtgcccagcttgattttc-tctctccaatgatcagttataaagctttttt--catatgcttgttgtccatatgtatgtcttcttttgaaaagtgtct-attcatgtcctttTCAGGACACTATCATttccctctaacctctcccacccctaagcaaccatgaatctattttctgtctctacagatttacctattctgga-tattgcacataaattagatcatacaata-tttaaaa--tttttttcacttagcatgttt------ttaagattcatcattgttttagtttgtatcagaac----------------------tttt-------------------tttttttttaaagtacaggg----tcttaatctgtcacccaggctggagtgcaagtggcactatcttggctcactgcaacctccacttcccaggttcaagccat----cctcccacctcacccttctaattagctgaagctacaggcgtgtgccaccacatccggctaatttttgtattttttgtagagatagggttttgccatatttcccaggctggtctcaaactctggctcaattgatctgcccgcctcagcctcccaaagtgcttggattacaagcaggagccaccacgcccagccagaacttcagttatttttattgccaaataacattttattgaatggatatatatatgggtataccctggagacactgcaggttcagttccagaccacctcaaagtgaatattgcaata----gag--tcacaacctttttggtttcccagtgcatatggaagttgtttttaggccaggcatggtggctcacgcctgtattcctag--cactttgggaggccgagatgggcggatcacttgagctcatgagtttgagaccagcctagg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        90007 1799 -   1709092 tttatcacccaggtgtcaagtccagtacccaatgcttgtttttt--ctgatc--ctcccttctcccacccaacatcctcaaatgggcacccaacaccctcaaatgggcaccagtgtctat------tgttcccttctttgtgtccat-atgtccttatcatttagctcccagttgtgagaacatgtggta-tttgattttgtgatcctgtgttagtttgctaaggattatggcctccagctccacccatgtt-cctgcaaaggacatgatctc---cttcttcacggctgtgtgtagtactctatggtgtatacataccacattttctttatccagcctatcaatgacaggcatttaggttgattccatgtttttgctattgtgaatagcactgcaatg--------aacatatgtgtgcatgtgtttttatggtaaaacgatttatattccttttggtacatactcagtaatgggattgctgggttgaatggaagttgtgtttttagctc-tttgaagaatcactacacta-ttttccacgacggctgaactaatttacattccc-accaacagtgtgtaagcgttcccttttccctcccgccacaaccttaccagcatctattatttaactttttaattgtagccgtcctgactggtgtgaggtagtatcttactgtggttttgattttcatttgctttttgttttgttgtgttgtgacacgaagtcttgctctgtcacccaggctggagtgcagtggcacaatctcggctcaccgcaacctctgcctcccaggttcaaatgattctcatgcctcagcctcccaagtagctgaaattactacaggcgcctgccaccatgcccagctaatttttgtaatttttagtagagacagggcttcactatgtttggccaggctggtctcaaactcctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattataggcatgagtcactgtgcccagcttgattttc-tctctccagtgatcagttataaagctttttt--catatgcttgttgtccacatgtatgtcttc-tttgaaaagtgtct-attcatgtcctttTCAGGACACTATCATttccctctaacctctcccacccctaagcaaccatgaatctattttctgtctctacagatttacctattctgga-tattgcacataaattagatcatacaata-tttaaaa--tttttttcacttagcatgttt------ttaagattcatcattgttttagcttgtatcagaac----------------ttttt-tttt-------------------ttttttttttaaagacaggg----tcttaatctgtcacccaggctggagtgcaagtggcactatcttggctcactgcaacctccacttcccaggttcaagccat----cctcccacctcacccttctaattagctgaagctacaggcgtgtgccaccacatccggctaatttgtgtattttttgtagagatagggttttgccatatttcccaggctggtctcaaactctggctcaattgatccgcccgcctcagcctcccaaagtgcttggattacaggcaggagccaccacgcccagccagaacttcagttatttttattgccaaataacattttattgaatggatatatatatgggtataccctggagacactgcaggttcagttccagaccacctcaaagtgaatactgcaata----cag--tcacaacctttttggtttcccagtgcatatggaagttgttttta-------------ggctcacgcctgtattcctag--cactttgggaggccgagatgggcggatcacttgagctcatgagtttgagaccaccctagg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17249753 1788 - 121039945 tttatcacccaggtgtccagtctagtacccaatgcttgtttttt--ctgatcctctcccttctct---------------------cacccaacaccctcaaatgggaaccagtgtctat------tgttcccctctttgtgtccat-atgtccttatcatttagctcccagttgtgagaacatgtggta-tttgattttgtgatcctggattagtttgctaaggattatggcctccagctccacccatgtt-cctgcaaaggacatgatatc---cttcttcatgactgtgtgtagtattccatggtgtatacataccacattttctttatccagcctaccactgacaggcatttaggttgattccatgtttttgctattgtgaatagcactgcaatg--------aacatatgtatgcatgtgtttttatggtaaaacgatttatattcctttcggtacatactcagtaatgggattgctgggttgaatggaagttgtgtttttagctc-tttgaagaatcactacatta-ttttccacaatggctgaactaatttatatcccc-accaacagtgtgtaagcatccccttt--ccccccgccacaaccttgcgagcatctattatttaactttttaattgtagccatcctgactggtgtgagatagtatcttactgtggttttgattttcatttgttttttgttttgttttgttgtgagacgaagtcttgctctgtcacccaggctggagtgcagtggcacaatctcggctcaccgcaacctctgcctcgcaggttcaaacgattctcatgcctcagcctcctgagtagctgagattactataggcgcctgccaccatgcccagctaatttttgtaatttttagtagaaacagggcttcactatgtttggccaggctggtctcaaactcctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattataggcatgagtcactgtgcccagcttgattttcatctctccaatgatcagttataaagctttttt--catatgcttgttgtccaaatgtatgtcttcttttgaaaagtgtct-attcatgtcctttTCAGGAGACTATCATttccctctaacctctcccacccctagacaaccatgaatctattttctgtctctacagatttacctattctgga-tatttcacataaattagatgatacgata-tttaaaa--tttttttcacttagcatgttt------ttaagattcatcattgttttagcttgtatcagaac----------------------tttt-------------------tttttttttttaagacaggg----tcttaatctgtcacccaggctagagtgcgagtggcactatcttggctcactgcaacctccacttcccaggttcaagccat----cctcccatctcacccttctaattagctgacactacaggcgtgtgccaccacatccggctaatttttgcattttttgtagagatagggttttgccatatttcccaggctggtctcgaactctggctcaattgatccgcccacctcagcctcccaaagtgcttggattacaggcaggagccaccacgcccagccagaacttcagttatttttattgccaaataacattttattgaatgg----atatatgggtataccttggagatattgcaggttcagttccagacgacctcaaagtgaatattgcaataaagtgag--tcacaacctttttggtttcccagtgcatattaaagttgtttttaggccaggcgtggtggctcacgcctgtattcctag--cactttgggaggccaagatgggcggatcgcttgagctcatgagtttgagaccagcctagg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60929870 1774 + 169600520 -ttatcacccaagagttaagtctattacccaatgcttgttttttt-ctgatcctctcccttctcc---------------------cacccaacaccctcaaatgggcaccagtgtctat------tgttcccctctttgtgtccataatgtccgtaccatttagctcccagttgtgagaacatgtggta-tttgattttgtgatcctgtgttagtttgctaaggattacggcct------------------cctgcaaaggacatgatctc------cttcatagc--tgtgtagtattccagggtgtatacgtaccacattttctttacccagcctaccactgacaggcatttaggtggattccatgtctttgctatt-tgaatagtgctgcaatg--------aacatacgtgtgcatgtgtttttatggtaaaacgatttatattcctttcggcatatacccagtaatgggattgctgggttgaatggaagtagtgtttttagctc-tttgaagaatcaatacacta-ttttccacaatggctgaactaatttatattccc-accaacagtgtgtaagcgttcccctt--tcccccacc-caaccttgccagcatctattatttgactttttaattgcagccatcctgactagtatgagatagtatcttattgtggttttgattttcatttctgtt---ttttgttttgttgtgagacaaagtcttgctctgtcacccaggttggagtgcagtggcatgatctcggctcaccgcaacctctgcctcccaggttcaaacgattctcatgcctcagcctcccgagtagttgggat---tagaggcgcctgccaccatgcccggctaatttttgtcatttttagtagagacagggcttcactacgtttggccaggctggtctcaa-------acctcaggtgatccacccacctcagcctcccaaagtgctgggattataggcatgagtcactgtgcccagcttaattttcacctctctaatgatcagttataaag-tttttt--catatgcttcttgtccacatgtatgtcttcttttgaaaagtgtctagttcatgtcctttTCAGGACACTATCATttccctcttacctctcccacccctaggcaactgtgaatctattttctgtctctacagatttacctattctgga-tatttcacataaattagatcatataata-ttaaaat-ttttttttcacttagcatgttt------ttaagattcatcattgttttagcttgtatcagaac--------------ttttttg-ttttttttaaagccaaataac-ttttttttttttgagacagca----tctggctctgtcacccaggctggagtgc-agtggcactatcttggctcactgcaacctctacttcccaggttcaagccat----cctcccacctcacccttccaattagctgacactacaagtgtgtgccaccacatctggctaatttttgtattttttgtagagatagggttttgccatatttcccaggctggtgtcgaactctggctcaagtaatccgccggcctcagcctcccaaagtgcttggattacaggcgtgaggcaccacgcccagccagaatttcatttctttttattgccaaataacattttattgaatgg----atatatgggtacaccttggagatactgcgggttcagttccag---acctcaaagtgaatattgcaataaagtgag--tcacaacctttttggtttcccagtgcatacgaaagttgttttttggccaggcatgatggctcacgcctgtactcctag--cactttgggaggccgagatgggcagatcgcttgagctcatgagtttgagaccagcctagg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108456598 1777 - 171882078 -ttatcacccaagagttaagtctattacccaatgcttgttttttt-ctgatcctctcccttctcc---------------------cacccaacaccctcaaatgggcaccagtgtctat------tgttcccctctttgtgtccat-atgtccgtaccatttagctcccagttgtgagaacatgtggta-tttgattttgtgatcctgtgttagtttgctaaggattacagcct------------------cctgcaaaggacatgatctc------cttcatagc--tgtgtagtattccagggtgtatacgtaccacattttctttacccagcctaccactgacaggcatttaggtggattccatgtctttgctatt-tgaatagtgctgcaatg--------aacatacgtgtgcatgtgtttttatggtaaaacgatctatattcctttcggcatatacccagtaatgggattgctgggttgaatggaagtagtgtttttagctc-tttgaagaatcaatacacta-ttttccacaatggctgaactaatttatattccc-accaacagtgtgtaagcgttcccctt--tccccaacc-caaccttgccagcatctattatttgactttttaattgcagccatcctgactagtatgagatagtatcttattgtggttttgattttcatttctgtt---ttttgttttgttgtgagacaaagtcttgctctgtcacccaggttggagtgcagtggcataatctcggctcaccgcaacctctgcctcccaggttcaaacgattctcatgcctcagcctcccgagtagttgggat---tagaggcgcctgccaccatgcccggctaatttttgtcatttttagtagagacagggcttcactatgtttggccaggctggtctcaa-------acctcaggtgatccacccacctcagcctcccaaagtgctgggattataggcatgagtcactgtgcccagcttgattttcacctctctaatgatcagttataaag-tttttt--catatgcttcttgtccacatgtatgtcttcttttgaaaagtgtctagttcatgtcctttTCAGGACACTATCATttccctcttacctctcccacccctaggcaactgtgaatctattttctgtctctacagatttacctattctgga-tatttcacataaattcgatcatataata-tcaaaat-ttttttttcacttagcatgttt------ttaagattcatcattgttttagcttgtatcagaac--------------ttttttg-ttttttttaaagccaaataac--tttttttttttgagacagca----tctggctctgtcacccaggctggagtgc-agtggcattatcttggctcactgcaacctctacttcccaggttcaagccat----cctcccacctcacccttccaattagctcacactacaagtgtgtgccaccacatctggctaatttttgtattttttgtagagatagggttttgccatatttcccaggctggtgtcgaactctggctcaagtaatccgccggcctcagcctcccaaagtgcttggattacaggcgtgaggcaccatgcccagccagaatttcatttctttttattgccaaataacattttattgaatgg----atatatgggtacaccttggagatactgcgggttcagttccagaccacctcaaagtgaatattgcaataaagtgag--tcacaacctttttggtttcccagtgcatacgaaagatgttttttggccaggcatgatggctcacgcctgtactcctagcacactttgggaggccgagatgggcagatcgcttgagctcatgagtttgagaccagcctagg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        70007 1780 -   2311642 -ttatcacccaagagttaagtctattacccaatgcttgttttttt-ctgatcctctcccttctcc---------------------cacccaacaccctcaaatgggcaccagtgtctat------tgttcccctctttgtgtccat-atgtctgtaccatttagctcccagttgtgagaacatgtggta-tttgattttgtgatcctgtgttagtttgctaagcattacggcct------------------cctgcaaaggacatgatctc---cttcttcatagc--tatgtagtattccagggtgtatacgtaccacattttctttacccagcctaccactgacaggcatttaggtggattccatgtctttgctatt-tgaatagtgccgcaatg--------aacacacgtgtgcatgtgtttttatggtaaaacgatttatattcctttcggcatatacccagtaatgggattgctgggttgaatggaagtagtgtttttagctc-tttgaagaatcaatacacta-ttttccacaatggctgaactaatttatattccc-accaacagtgtgtaagcgttcccctt--tcccccacc-caaccttgccagcatctattatttgactttttaattgcagccatcctgactagtatgagatagtatcttattgtggttttgattttcatttctgtt---ttttgttttgttgtgagacaaagtcttgctctgtcacccaggttggagtgcagtggcatgatctcggctcaccgcaacctctgcctcccaggttcaaacgattctcatgcctcagcctcccgagtagttgggat---tagaggcgcctgccaccatgcccggctaatttttgtcatttttagtagagacagggcttcactatgtttggccaggctggtctcaa-------acctcaggtgatccacccacctcagcctcccaaagtgctgggattataggcatgagtcactgtgcccagcttgattttcacctctctaatgatcagttataaag-tttttt--catatgcttcttgtccacatgtatgtcttcttttgaaaagtgtctagttcatgtcctttTCAGGACACTATCATttccctcttacctctcccacccctaggcaactgtgaatctattttctgtctctacagatttacctattctggattatttcacataaattagatcatataata-ttaaaat-ttttttttcacttagcatgttt------ttaagattcatcattgttttagcttgtatcagaac--------------ttttttgtttttttttaaagccaaataac--tttttttttttgagacagca----tctggctctgtcacccaggctggagtgc-agtggcactatcttggctcactgcaacctctacttcccaggttcaagccat----cctcccacctcacccttccaattagctgacactacaagtgtgtgccaccacatctggctaatttttgtattttttgtagagatagggttttgccatatttcccaggctggtgtcgaactctggctcaagtaatccaccggcctcagcctcccaaagtgcttggattacaggcgtgaggcaccacgcccagccagaatttcatttctttttattgccaaataacattttattgaatgg----atatatgggtacaccttggagatactgcgggttcagttccagatcacctcaaagtgaatattgcaataaagtgag--tcacaacctttttggtttcccagtgcatacgaaagttgttctttggccaggcatgatggctcacgcctgtactcctag--cactttgggaggccgagatgggcagatcgcttgagctcatgagtttgagaccagcctagg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        65525 1785 -   1987038 -ttatcacccaagagttaagtctattacccaatgcttgttttttt-ctgatcctctcccttctct---------------------cacccaacaccctcaaatgggcaccagtgtctat------tgttcccctctttgtgtccgt-atgtctgtaccatttagctcccagttgtgagaacatgtggta-tttgattttgtgatcttgtgttagtttgctaaggattatggcct------------------cctgcaaaggacatgatctc---cttcttcatggc--tgtgtagtattccagggtgtatacgtaccacattttctttaccctgcctaccactgacaggcatttaggtggattccatgtctttgctattgtgaatagtgctgcaatg--------aacatacgtgtgcatgtgtttttatggtaaaatgatttatattcctttcggcatatacccagtaatgggattgctgggttgaatggaagtagtgtttttagctc-tttgaagaatcaatacacta-ttttccacaatggctgaactaatttatattccc-accaacagtgtgtaagcgttcccctt--tcccccacc-caaccttgccagcatctattatttgactttttaattgcagccatcctgactagtatgagatagtatcttattgtggttttgattttcatttctgtt---ttttgttttgttgtgagacaaagtcttgctctgtcacccaggttggagtgcagtggcatgatctcggctcaccacaacctctgcctcccaggttcaaacgattctcatgcctcagcctcccaagtagttgggat---tagaggtgcctgccaccatgcccggctaatttttgtcatttttagtagagacagggcttcactatgtttggccaggctggtctcaa-------acctcaggtgatccacccacctcagcctcccaaagagctgagattataggcatgagtcactgtgcccagcttgattttcacctctctaatgatcagttataaag-tttttt--catatgcttcttgtccacatgtatgtcttcttttgaaaagtgtct-gttcatgtcctttTCAGGACACTATCATttccctcttacctctcccacccctaggcaactgtgaatctattttctgtctctacagatttacctattctgga-tatttcacataaattagatcatataata-tgaaaaa-ttttttttcacttagcatgttt------ttaagattcatcattgttttagcttgtatcagaacttc--------cttttttttt-ttttttttaaagccaaataac-ttttttttttttgagacagta----tctggctctgtcacccaggctggagtgc-agtggcactatcttggctcactgcaacctctacttcccaggttcaagccat----cctcccacctcatccttccaattagctgacactacaagtgtgtgccaccacatccggctaatttttgtattttttgtagagatagggttttgccatatttcccaggctggtgtcgaactctggctcaagtaatccgccggcctcagcctcccaaagtgcttggattacaggcgtgaggcaccacgcccagccagaacttcatttctttttattgccaaataacattttattgaatgg----atatatgggtacaccttggagatactgcgggttcagttccagaccacctcaaagtgaatactgcaataaagtgag--tcacaacctttttggcttcccagtgcatacgaaagttgtttcttggccaggcatgatggctcacacctgtactcctag--cactttgggaggctgagatgggcagatcgcttgagctcatgagtttgagaccagcctagg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21146511 1779 -  24206276 -ttatcacccaagagttaagtctattacccaatgcttgttttttc-ctgatcctctcccttctcc---------------------cacccaacaccctcaaatgggcaccagtgtctat------tgttcccctctctgtgtccat-at-----taccatttagcgcccagttgtgagaacatgtggta-tttgattttgtgatcttgtgttagtttgctaaggattatggcct------------------cctgcaaaggacatgatctc---cttcttcatggc--tgtgtagtattccagggtgtatacgtaccacattttctttacccagcctaccactgacaggcatttaggtggattccatgtctttgctattgtgaatagtgctgcaatg--------aacatacgtgtgcatgtgtttttatggtaaaatgatttatattcctttcggcatatacccagtaatgggattgctgggttgaatggaagtagtgtttttagctc-tttgaagaatcaatacacta-ttttccacaatggctgagctaatttatattccc-accaacagtgtgtaagcgttcccctt--tcccccacc-caaccttgccagcatctattatttgactttttaattgcagccatcctgactggtatgagataatatcttattgtggttttgattttcatttctgtt---ttttgttttgttgtgagacaaagtcttgctctgtcacccaggttggagtgcagtggcatgatctcggctcaccgcaacctctgcctcccaggttcaaacgattctcatgcctcagcctcccgagtagttgggat---tagaggcgcctgccaccatgcccggctaatttttgtcatttttagtagagacagggcttcactatgtttggccaggctggtctcaa-------acctcaggtgatccacccacctcagcctcccaaagtgctgggattataggcatgagtcactgtgcccagcttgattttcatctctctaatgatcagttataaag-tttttt--catatgcttcttgtccacatgtatgtcttcttttgaaaagtgtct-gttcatgtccttttcaagacactatcatttccctcttacctctcccacccctaggcaactgtgaatctattttctgtctctacagatttacctattctgga-tatttcacataaattagatcatataata-ttaaaat-ttttttttcacttagcatgttt------ttaagattcatcattgtttaagcttgtagcagaacttctttttttttttttttttt-ttttttttaaagccaaataactttttttttttttgagacagta----tctggctctgtcacccaggctggagtgc-agtggcactatcttggctcactgcaacctctacttcccaggttcaagccat----cctcccacctcacccttccaattagctgacactacaagtgtgtgccaccacatccggctaatttttgtattttttgtagagatagggttttgccatatttcccaggttggtatcgaactctggctcaagtaatccgccggcctcagcctcccaaagtgcttggattacaggcgtgaggcaccacgcccagccagaacttcatttctttttattgccaaataacattttattgaatgg----atataTGggtacaccttggagacactgcgggttcagttccagaccacttcaaagtgaatattgcaataaagtgag--tcacaacctttttggtttcccagtgcatacgaaagttgttttttggccaggcatgatggctcacgcctgtactcctag--cactt----------agatgggcagatcgcttgagctcatgagtttgagaccagcctagg
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        85155 1801 -   1784207 tttatcacccaggagttaagtctattacccaatgcttgttttttt-ctgatcctctcccttctcc---------------------cacccaacatcctcaaatgggcaccagtgtctat------tgttcccctctttgtgtccgt-atgtccgtaccatttagctcccagttgtgagaacatgtggta-tttgattttgtgatgctgtgttagtttgctaaggattatggcctccagctccacccatgttcccggcaaaggacatgatctc---cttcttcatggc--tgtgtagtattccagggtgtatacgtaccacattttctttacccagcctacccctgacaggcatttaggtggattccatgtctttgctattgtgaatagtgctgcaatg--------aacatgtgggtgcatgtgtttttacggtaaaacgatttatattcctttcggcatatacccagtaatgggattgctgggttgaatggaagttgtgtttttagctc-tttgaagaatcaatacacta-ttttccacaatggctgaactaatttatattccc-accaacagtgtgtaagcgttcccctt--tcccccacc-cgacctt----gcatctattatttgactttttaattgcagccatcctaactggtatgagatagtatcttattgtggttttgattttcatttctgtt---tttggttttgttgtgagacaaagtcttgctctgtcacccaggttggagtgcagtggcatgatctcggctcaccgcaacctctgcctcccaggttcaaacgattctcatgcctcagcctcccgagtagttgggat---tagaggcacatgccaccatccctggctaatttttgtcatttttagcagagatagggcttggctatgcttggccaggctggtctcaa-------acctcaggtgatccgcccacctcagcctcccaaagtgctgggattatacgcatgagtcaccgtgctcagcttgattttca----tctaatgatcagttataaag-tttgtt--catatgcttcttgtccacatgtatgtcttcttttgaaaagtgtct-gttcatgtcctttTCAGGACACTATCATttccctctaacctctcccacccctaggcaactgtgaatctattttctgtctctacagatttacctattctgga-tatttcacataaactagatcatataatatttaaaat-ttttttttcacttagcatgtttttaagattaagattcatcattgttttagcttgtatcagaac-------------ttcctttt-ttttttttgaagccaaataac--tttttttttttgagacagta----tctggctctgtcacccaggctggagtgc-agtggcactatcttggctcactgcaacctctactttccaggttcaagccatcctccctcccacctcacccttccaattagctgacactacaagcctgtgccaccacatccggctaatttttgtattttttgtagagatagggttttgccatatttcccaggctggtgtcaaactctggctcaagtgatccgccggcctcagcctcccaaagagcttggattacaggcatgaggcaccacgcccagccagaacttcatttctttttattgtcaaataacattttactgaatgg----atacatgggtataccttggagatactgccggttcagttccagaccacctcaaagtgaatattgcaataaagtgag--tcacaacctttttggtttcccagtgcatacgaaagttgttttttggccaggcatgatggctcacgcctgtactcctag--cactttgggaggccgagatgggcagatcgcttgagctcatgagtttgagaccagcctagg
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22289190 1733 + 158406734 tttaccacccaggaattacatccagtacccaatgc---ttttttttctgatcctctctcttctcc---------------------cacccaccacactcaaatagaccgcagtgtctat------tgttaccctcttcgtgtctat-atgtcctcattatttagctcccacttgtgagaac--gtggtattttgattttccgatcctgtgttagttcgctaaggattatggcctccagctctaaccatgtt-cctataaagggcatgatctcatccttcttcgtggc--tgtgttgtattccatggtgtgtgggtaccacattttctttatctagtctactactgatggacatttaggttgattgcatgtctctactattgtgaacggtgctgcaatactgttcacaatatatgtgtgtatgtgtttttatggtagaacgatttatattcctttgggtatatacccagtaatgggattgctgggttgaatg-tagttctgtttttaactcttttgaggaatcacgacattg-ttttccacaatggttgaactaatttatattcccaatcaacagtgtgtaagcattcccctt--tccccgctaacaacctt--------------------------------------ctggtgtgaatgagatggtatcttattgtggctttgattttcatttctgtt---t----ttttgttgtgagacaaagtcttgccctgtcacccaggatggagtgcagtggcatgatctccgctaactgcaatctctgcctcccaggatcaaatgattctcatgcctcagcctcccatgtagctggggt---tacaggtgcccgcc-ccaggtccagctaatttttatagtttttagtagagatggggcttcaccatg-ttggccaggctggtcttaaactcctgacttcaggtgatctgccca------cctcccaaagtcctggaattataggcataagccactgcgccaagcttgagtttca----tctaattatcagtaataaagctttctt--catatgcttattgtcaacatgtatgtcttcttttgaaaagtgtct-gttcatatcctttTTAGGACACTATCATttccctctaacctcttc--cctcgaggcaaccatgaatctattttctgtctctgcagatttacctattctgga-tatttcacataaattagatcatacaatg-tttaaaaaaattttttcacttagcatgttt------taaa-attcctaattgttttagcatataccagaac----------------------ttc---------------------ttttttgtgtgtgaaaggg----tgtcactctgtcacccaggctagagtgc-agtggcattatcttggctgactgcaacctctacctcccaggttcaaaccat----cctcccacttcagcctacttattagttgacactacaggtgtgtgccaccactcctggctaattttcatagtttttgtagagatggggttttgtcatgttttccaggctggtcttgaactctggctcaagcaatctgccctcctcagcctcccaaagtgcttggattacaggcgtgagccaccgtgcctagacagaacttcatttctttttattgccaaataacattttattgaatgg----atatATGggtataccttggagatattctaggttcagtcccagaccacctcaaagtgaatattccaataaagttagtttcagaaccttttt-gtttcccagtgcatatgaaagttatttttaggccatgtatggtggctcatgcctgtaatcccag--cactttgggaggccaaggtgggcggatcacttgagctcatgagtttgagaccagcctagg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50518923 1699 +  54856640 tttaccacccaggtattatgtccagtacccaatgc---ttttttttctgaacctctctcttctcc---------------------aacccaccacactcaaatagaccccagtgtctat------tattaccctct--gtgtctgt-atg---tcaccatttagctcccacttgtaagaac--atgatattttgatttttcaatcctgtgttagtttgctaagaattatgacctctagctctatctatgtt-cctatcaagggcatgatctcctcctccttcatggc--tgtgttgtattccatggtgtgtatgtaccacattttctttatccagtctactattgatgggcatttaggttgattgcatgtctctactatggtgaacagtgctgcaatattgttcacaatatatgtgtgcatgtgtttttatggtagaacaatttatattcctttgggtatatacccagtaatgggattgctgggttgaacgctggttctgtttttaactcttttgaggaatcactacactgtttttccacaatgactgaactaatatatattccccatc----------------------------------accacctt--------------------------------------ctggtgtgagtgagatggtatcttaatgtggctttgattttcatttctgtt---ttttgttttgttttgagacaaagtctcgccctgtcacccaggatggagtgcagtggcatgatctcggctaattgcaacctctgcctctcaggttcaaatgattctcatgcctcagcctcccacgtagctaggat---tacaggagcctgccaccatgcccagctaatttttgtagtttttagtagagatggggcttcaccatg-ttggccaggctggtctt-aactcctgacctcaggtgatctgcccacctcagcctctcaaagtcctggaattacaggcataagtcactgcgcccagcttgagtttca----cctaattatcagtaataaagctttttttccatatgcttattgtccacatgtatgtcttcttttaaaaggtgtct-gttcatgtcctttTTAGGACACTAtcatttccctccaacctctcccacccctaggcaaccatgaatctattttctgtctctgcagatttacctattctgga-tatttcacataaattagatcatacaatg-tttaaaaaaattttttcacttatcatgttt------ttaa-attcataattgttttagcatatatcagaac----------------------tac---------------------ttttttgtgtgtgacaggg----tctcactctgtcacccaggctagagtac-agtggcattatcttggctcactgcaacctctacctcccaggtttaaaccat----tctcccacttcagcct--------------actacagtagtgtgccaccacgcctggctaattttcatattttttgtagagatggggttttgccatgttttccaggctggtcttgaactctggctcaagcgatctgcccgcctcagcctcccaaagcgcttggattacaggcatgagccaccacgcctggacagaacttcatttctttttattgccaaataacattttattgaatgg----aaatatgggtataccttggagatattgtaggttcagtcccagaccacctcaaaatgaatattccaataaagttagtttcacaacctttttggtttcccagtgcatatgaaagttatttttaggccatgtatggtggctcatgcctgtaatctcag--cactttgggaggccaaggtgggtggatcgcttgagctcatgagtttgagaccagcctagg
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40687655 1766 +  42888418 tttaccacccaggtattacgtccagtacccaatgcttgtttttttcctgatcctctctcttctcc---------------------cacccaccacactcaaatagaccccagtgtctatgtctactgttaccctctttgtgtctat-atgtcctcatcatttagatcccacttgtgagaacatgtggtattttgattttccaatcctgtgttagtttgctaaggattatggcctccaactctatccatgtt-cctataaaggacatgatctcccccttcttcatggc--tgtgttgtattccatggtgtgtacgtaccacattttctttatccagtctactattgatgggcatttaggttgattgtatgtctctactattgtgaacagtgctgcaatactgttcacaatatatgtgtgtgtgtgtttttatggtagaacaatttatattcctttgggtatatacccagtaatgggattgctgggttgaacggtagt--tgtttttaactcttttgaggaatcactacactg-ttttccacaatggccgaactaatttatattcccaaccaacagtgtgtaagcattaccctt--tccccccg-acaacctt--------------------------------------ctggtgtgagtgagatggtatcttattgtggctttgattttcatttgtttt---t-ttgttttgttttgagacaaagtcttgccctgtcacccaggatggaatgcagtggcatgatctcggctaactgcaatctctgcctctcaggttcaaatgattctcatgcctcagcctcccacgtagctgggat---tacaggtgcccaccaccacgcccagctaatttttgtagtttttagtagagacggggcttcaccatg-ttggccaggctggtctcaaactcctgacctcaggtgatctgcccacctcggcctcccaaagtcctggaattataggcataagccactgtgcccagcttgagtttca----tctaatgatcagtaataaagctttttt--catatgcttattgtccacatgtatctcttcttctgaaaagtgtct-gttcatgtcctttttaggacactatcatttccctctaacctctcccacccctaggcaaccacgaatctattttctgtctctgcagatttacctattctgga-tatttcacataaataagataatacaatg-tttaaaaaatttttttcacttagcatgttt------ttaa-atgcataattgttttagcatatatcagaac----------------------ttctttttt--------------tttttttttttgtgacagggtctctctcactctgtcacccaggctagagtgc-agtggcattatcttggctcactgcaacctctacctcccaggttcaaaccat----cctcccacttgagccttcttattagttaacactacaggtgtgtgccaccacgcctggctaattttcatgttttttgtagagatggggttttgccatgttttccaggctggtcttgaactctggctcaagtgatctgcctgcctcagcctcccaaagtgcttggattacaggcgtgagccactatgcctagacagaacttcatttctttttattgccaaataatattttattgaatgg----atataTGggtataccttggagatattgtaggttcagtcctagaccatctcaaagtgaatattgcaataaagttagtttcacaacctttttggattccaagtgcatatgaaagttatttttaggccatgtatggtggctcatgtctataatcccaa--cactttgggaggcaaaggtgggcggatcgcttgagttcatgagtttgagaccagcctagg
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e cebCap1.NW_016107610v1       661449 3239 -   2910086 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I

a score=65074.000000
s hg38.chr15_KI270850v1_alt    381504 10 +    430880 ctacatggtg
s panTro5.chr15              63534577 10 +  83230942 ctacatggtg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80491514 10 +  99763055 ctacatggtg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        91806 10 -   1709092 ctacatggtg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17251541 10 - 121039945 ctacatggtg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60931644 10 + 169600520 ctacatggtg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108458375 10 - 171882078 ctacatggtg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        71787 10 -   2311642 ctacatggtg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        67310 10 -   1987038 ctacatggtg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21148290 10 -  24206276 ctacatggtg
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        86956 10 -   1784207 ctacatggtg
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22290923 10 + 158406734 caacaaggtg
i calJac3.chr6              C 0 C 0
s aotNan1.NW_018505940v1     40689421 10 +  42888418 caacaaggtg
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e cebCap1.NW_016107610v1       661449 3239 -   2910086 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e saiBol1.JH378108           50520622  0 +  54856640 C

a score=6006.000000
s hg38.chr15_KI270850v1_alt    381514 1 +    430880 a
s panTro5.chr15              63534587 1 +  83230942 a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80491524 1 +  99763055 a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        91816 1 -   1709092 a
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17251551 1 - 121039945 a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60931654 1 + 169600520 a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108458385 1 - 171882078 a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        71797 1 -   2311642 a
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        67320 1 -   1987038 a
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21148300 1 -  24206276 a
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        86966 1 -   1784207 a
i colAng1.NW_012117110v1    C 0 C 0
s aotNan1.NW_018505940v1     40689431 1 +  42888418 a
i aotNan1.NW_018505940v1    C 0 I 140
e mm10.chr7                  81401067 2019 + 145441459 I
e calJac3.chr6               22290933 0 + 158406734 C
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e cebCap1.NW_016107610v1       661449 3239 -   2910086 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e saiBol1.JH378108           50520622 0 +  54856640 C

a score=1058304.000000
s hg38.chr15_KI270850v1_alt    381515 237 +    430880 aaccccatctctaccaaaaat----------acagggactggtacggcatgcctgtaatcccagctacctaggagcttgaggtggaaggatggcttgagcctgggaggcagaggttgcagtgagccaagattacactactgcactccagcctggatgacagagccagatattgtctcaaaaaaaaaaaaaaaaagttaatttttgtattatagtctattaaatgtgtaatagcattgatgtcttttt
s panTro5.chr15              63534588 231 +  83230942 aaccccatctctaccaaaaat----------acagggactggtacggcatgcctgtaatcccagctacctaggagcctgaggtgggaggatggcttgagcctgggaggcagaagttgcagtgagccaagattacactactgcactccagcctggatgacagagccagatattgtctc------aaaaaaaaaaagttaatttttgtattatagtctattaaatgtgtaatagcattgatgtcttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80491525 230 +  99763055 aaccccatctctaccaaaaat----------acagggactggtacggcatgcctgtaatcccagctacctaggagcctgaggtgggaggatggcttgagcctgggaggcagaagttgcagtgagccaagattacactactgcactccagcctggatgacagagccagatattgtctc-------aaaaaaaaaagttaatttttgtattatagtctattaaatgtgtaatagcattgatatcttttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        91817 231 -   1709092 aaccccatctctaccaaaaat----------acagggaatggtacggcatgcctgtaatcccagctacctaggagcctgaggtggaaggatggcttgagcctgggaggcagaggttgcagtgagccaagattacactactgcactccagcctggatgacagagtcagatactgtctc------aaaaaaaaaaagttaatttttgtattatagtctattaaatgtgtaatagcattgatgtctttct
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17251552 235 - 121039945 aatcccatctctaccaaaaat----------acagggaatggtagggcatgcctgtaatcccagctacctaggagcctgaggtgggaggatggcttgagcctgggaggcagaggttgcagtgagctaagattatactactgcactccagcctgggtgacagggccagatattgtctc--aaaaaaaaaaaaaaagttaattttcgtattatagtctattaaatgtgtaatagcattgatgtcttttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60931655 244 + 169600520 aatcccatttctaccaaaaatacaaaaattaacagggcatagtagggcatgtctgtaatcccagctatctaggagcttgaggtgggacgatagtttgaacctgggaggcagaggttgcagtgagccaagattacactactgcactccagcctgggtgacagagccagatattgtcta--aaaaaaaaaaaaaaagtt-atttttatattatagtctatcaaatgtgtaatagcattgatgtcttttt
i rheMac8.chr7              C 0 I 3725
s macFas5.chr7              108458386 244 - 171882078 aatcccatttctaccaaaaatacaaaaattaacagggcatagtagggcatgtctgtaatcccagctatctaggagcttgaggtgggacgatagtttgaacctgggaggcagaggttgcagtgagccaagattacactactgcactccagcctgggtgacagagccagatattgtcta--aaaaaaaaaaaaaaagtt-atttttatattatagtctatcaaatgtgtaatagcattgatgtcttttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        71798 241 -   2311642 aatcccatttctaccaaaaatacaaaaattaacagggcatagtagggcatgtctgtaatcccagctatctaggagcttgaggtgggacgatagtttgaacctgggaggcagaggttgcagtgagccaagattacactactgcactccagcctgggtgacagagccagatattgtct-----aaaaaaaaaaaaagtt-atttttatattatagtctatcaaatgtgtaatagcattgatgtcttttt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        67321 241 -   1987038 aatcccatttctaccaaaaatacaaaaattaacagggcatagtagggcatgtctgtaatcgcagctatctaggagtttgaggtgggacgatagtttgaacctgggaggcagaggttgcagtgagccaagattacactactgcactccagcatgggtgacagagccagatattgtct-----aaaaaaaaaaaaagtt-atttttatattatagtctatcaaatgtgtaatagcattgatgtcttttt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21148301 243 -  24206276 aatcccatttctaccaaaaatacaaaaattaacagggcatagtagggcatgtctgtaatcccagctacctaggagcttgaggtgggacgatagtttgaacctgggaggcagaggttgcagtgagccaagattacactactgcactccagcctgggtgacagagccagatattgtct---caaaaaaaaaaaaaagtt-atttttatattatagtctattaaatgtgtaatagcattgatgtcttttt
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        86967 244 -   1784207 aatcccatctctaccaaaaatacaaaaattaacagggcatagtagggcatgtctgtaatcccagctacctaggagcctgaggtgggaggatagtttgaacctgggaggcagaggttgcagtgagccaagattacactactgcactccagcctgggtgacagagccagatattgtctc--aaaaaaaaaaaaaaagtt-atatttatattatagtctattaaatgtgtaatagcattgatgtcttttt
i colAng1.NW_012117110v1    C 0 C 0
e aotNan1.NW_018505940v1     40689432 140 +  42888418 I
e mm10.chr7                  81401067 2019 + 145441459 I
e calJac3.chr6               22290933   0 + 158406734 C
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e cebCap1.NW_016107610v1       661449 3239 -   2910086 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e saiBol1.JH378108           50520622   0 +  54856640 C

a score=1157207.000000
s hg38.chr15_KI270850v1_alt    381752 327 +    430880 aagaagtacatatcataattttaaaacacttcattgctaaagaatcctaacaattgggccgggcgcggtggttcacgcctgtaatccgagcactttggaaggtggccaaagtgccgaggtgggcagattacaaggtcaggagatcgagaccatccgggctaacatggtgaaaccctgtctctactaaaaatacaaaaaaattagccgggcatggtggcacatgcctgtggtcccagctactcgggaggctgaggcaggagaatcacctgaacctgggaggcggaggttgcagtgagccaagattgcgctgctacactccatcctgga
s panTro5.chr15              63534819 327 +  83230942 aagaagtacatatcataattttaaaacacttcattgctaaagaatcctaacaattgggccgggcgcggtggttcacgcctgtaatccgagcactttggaaggtggccaaagtgccaaggtgggcagattacaaggtcaggagatcgagaccatccggcctaacatggtgaaaccctgtctctactaaaaatacaaaaaaattagctgggcatggtggcacatgcctgtggtcccagctactcgggaggctgaggcaggagaatcacctgaacctgggaggcggaggttgcagtgagccaagattgtgctgctacactccatcctgga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80491755 326 +  99763055 aagaagtacatatcataattttaaaacacttcattgctaaagaatcctaacaattgggccgggcgcggtggttcacgcctgtaatccgagcactttggaaggtggccaaagtgccaaggtgggcagattacaaggtcaggagatcgagaccatccggcctaacatggtgaaaccctgtctctactaaaaatac-aaaaaattagctgggcatggtggcacatgcctgtggtcccagctactcgggaggctgaggcaggagaatcacctgaacctgggaggcggaggttgcagtgagccaagattgtgctgctacactccatcctgga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        92048 312 -   1709092 aagaagtacatatcataattttaaaacacttcattgctaaagaatcctaacaattgggccgggcgcggtggttcacgccca----ccgagcactttcgaag-----------gccgaggtgggcagattacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctactaaaaatacaaaaaaattagccgggcatggtggcacatgcctgtggtcccaactactcgggaggctgaggcaggagaatcacctgaacctgggaggcggaggttgcagtgagccaagattgcgctgctacactccaacctgga
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17251787 311 - 121039945 aagaagta-----cataattttaaaacacttcattgctaaagaatcctaacaattgggccgggcgcggtggctcaggcctgtaatcccagcactttgggag-----------gccgaagtgggcagattacgaggtcaggagatcgagactatcctggctaacacggtgaaaccctgtctctactaaaaatacaaaaacattagccgggcatggtggcacatggctgtggtcccagctactcgggaggctgaggcaggagaatcacttgaacctgggaggcagaggttgcagtgagccaagattgcgctgctacactccaccctagg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108458630 316 - 171882078 aaaaagtacatatcataattttaaaacacttcattgctaaagaatcctaacaattgggccaggtacggtggctcacgcctgtcatcccaacactttgggag-----------gccaaggcaggcagattaagaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaaattaactggacatggaggcgcacgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaagctgggatgcagaggttacagtgaggcaagactgcgctgctgcactccatcctgag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        72039 316 -   2311642 aaaaagtacatatcataattttaaaacacttcattgctaaagaatcctaacaattgggccaggtgcggtggctcacgcctgtcatcccaacactttgggag-----------gccgaggcaggcagattaagaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaaattaactggacatggaggtgcacgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaagctgggatgcagaggttacagtgaggcaagactgcgctgctgcactccatcctgag
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        67562 316 -   1987038 aaaaagtacatatcataattttaaaacacttcattgctaaagaatcctaacaattgggccaggtgcggtggctcacgcctgtcatcccagcactttgggag-----------gccaaggcaggcagattaagaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctccactaaaaatacaaaaaaattaactggacatggaggcacatgcctgtagtcccagctactcagggggctgaggcaggagaatcacttgaagctgggatgcagaggttacagtgaggcaagactgcactgctgcactccatcctgag
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21148544 316 -  24206276 aaaaagtacatatcataattttaaaacacttcattgctaaagaatcctaacaattgggccaggtgcggtggcttacgcctgtcatcccagcactttgggag-----------gccgaggcaggcagattacaaggtcaggagatcgagaccatcctggctaacacagtgaaaccacgtctctactaaaactacaaaaaaattaactggacatggaggcacacgcccgtagtcccagctactcaggaggctgaggcgggagaatcacttgaagctgggatgcagaggttacagtgaggcaagactgcgctgctgcactccaccctgag
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        87211 316 -   1784207 aaaaagtacgtatcataattttaaaacacttcattgctaaagaatcctaacaattgggccaggtgcggtggctcacgcctgtcatcccagcactttgggag-----------gccaaggcaggcagattacgaggtcaggagatggagaccatcctggctaacacagtgaaaccccgtctctactaaaaataaaaaaaaattaactggacatggaggtacacacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggcagaggttatagtgagccaagactgcgctgctgcactccaccctgag
i colAng1.NW_012117110v1    C 0 C 0
e aotNan1.NW_018505940v1     40689432 140 +  42888418 I
e mm10.chr7                  81401067 2019 + 145441459 I
e calJac3.chr6               22290933   0 + 158406734 C
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e cebCap1.NW_016107610v1       661449 3239 -   2910086 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e rheMac8.chr7               60931899 3725 + 169600520 I
e saiBol1.JH378108           50520622   0 +  54856640 C

a score=2960.000000
s hg38.chr15_KI270850v1_alt    382079 2 +    430880 ca
s panTro5.chr15              63535146 2 +  83230942 ca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80492081 2 +  99763055 ca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        92360 2 -   1709092 ca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17252098 2 - 121039945 cg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108458946 2 - 171882078 tg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        72355 2 -   2311642 tg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        67878 2 -   1987038 tg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21148860 2 -  24206276 tg
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        87527 2 -   1784207 tg
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50520622 2 +  54856640 ca
i saiBol1.JH378108          C 0 I 8
e aotNan1.NW_018505940v1     40689432 140 +  42888418 I
e mm10.chr7                  81401067 2019 + 145441459 I
e calJac3.chr6               22290933 0 + 158406734 C
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e cebCap1.NW_016107610v1       661449 3239 -   2910086 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e rheMac8.chr7               60931899 3725 + 169600520 I

a score=328036.000000
s hg38.chr15_KI270850v1_alt    382081  89 +    430880 acagagcgatactccgtctcaaaaaaagaaaaaagaa-------------------------------------------------------------------------------------acttaataat----tatcagagacttcagtgagtcataatcttattgctggtggag
s panTro5.chr15              63535148  89 +  83230942 acagagcgatactccgtctcaaaaaaagaaaaaagaa-------------------------------------------------------------------------------------acttaacaat----tatcagagacttcagtgagtcataatcttattgctggtggag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80492083  89 +  99763055 acagagcgatactccgtctcaaaaaaagaaaaaagaa-------------------------------------------------------------------------------------acttaacaat----tatcagagacttcagtgagtcataatcttattgctggtggag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        92362  89 -   1709092 acagagcgatactccatctcaaaaaaagaaaaaagaa-------------------------------------------------------------------------------------tcttaacaat----tatcagacacttcagtgagtcataatcttactgctggtggag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17252100  93 - 121039945 acagagtgatactctgtctcaaaaaaagaaaaatgaa-------------------------------------------------------------------------------------tcctaacaatttgatatcagagacttcagtgagtcataatcttattgctggtggag
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108458948  84 - 171882078 acagagcaatactccgtctccaa-----aaaaaagaa-------------------------------------------------------------------------------------tcctaacaat----tatcagagacttcagtgagtcataatctcattgctggtggac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        72357  84 -   2311642 acagagcaatactccgtctccaa-----aaaaaagaa-------------------------------------------------------------------------------------tcctaacaat----tatcagagacttcagtgagtcataatctcattgctggtggac
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        67880  84 -   1987038 acagagcaatactccgtctccaa-----gaaaaagaa-------------------------------------------------------------------------------------tcctaacaat----tatcagagacttcagtgagtcataatctcattgctggtggac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21148862  84 -  24206276 acagagcaatactccgtctccaa-----aaaaaagaa-------------------------------------------------------------------------------------tcctaacaat----tatcagagacttaagtgagtcataatctcattgctggtggac
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        87529  83 -   1784207 acagagcaatactccgtctccaa------aaaaagaa-------------------------------------------------------------------------------------tcctaacaat----tatcagagacttcagtgagtcataatctcattgctggtggac
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22290933 142 + 158406734 acagagctagatctggtctcaaaaaaaaaaaaaagta---------ttttatactatagtctattaaatgtgtatatcgt--------------aattttaaaacactttattgctgaagaatcctaatgat----catcagagacttcagtgagtc--------aacgctggctga-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50520632 151 +  54856640 acagaaccagacctggtctcaaaaaaaaaaaaaaaaaaaaagttatttttatactatggtctatta--------------aatgtatatatcataattttaaaacactttattgctgaagaatcctaacaat----tatcagagacttcagtgagtc--------aatgctggcgga-
i saiBol1.JH378108          I 8 C 0
e aotNan1.NW_018505940v1     40689432 140 +  42888418 I
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e cebCap1.NW_016107610v1       661449 3239 -   2910086 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e rheMac8.chr7               60931899 3725 + 169600520 I

a score=4061658.000000
s hg38.chr15_KI270850v1_alt    382170 647 +    430880 gggtcttgcctcaatgtgcatggctgctgac--ataagggtggt-ggttgctgaaggctgggttaactgcggcaatttct-----taagacaaccatgatgtttgccgcatagttcgattcttcctttcatgaaagatttctctgtatcatgtgatgctgtttgataacattttacctaccataggagaac-tttcaaaattggagtcaatcctctcaaactctgcctctgctttatcaactaactttatgtggaaattctaaatcctttgttgtct--tcaacaaaaatgttcacagcatctgcaccaggagtaga-ttctatcaataaaccattcatctgtaagaagcaattcatc------ccaagttttatcatgagattgcagcaaattcagtcacatcttcaggctccacttttaatcctacttctcttgctatttccaccacgtgtgtagttacttcctccactgaagcagtgagaacccctcaaagtcatctatgaagtttggaatcaacttcttccaaattcctattcatgttaatatttttacctcctcccatgcatcacaaatgttcttaacagtatctagaataatgaatcctttccagaaggttttcccagatccatcaaaggaataactatcaatggcagctctagcctta
s panTro5.chr15              63535237 652 +  83230942 gggtcttgcctcaatgtgcatggctgctgac--ataagggcggt-ggttgctgaaggctgggttaactgtggcaatttcttaaaataagacaaccatgatgtttgccgcatagttcgattcttcctttcatgaaagatttctctgtatcatgtgatgctgtttgataacattttacataccataggagaac-tttcaaaattggagtcaatcctctcaaactctgcctctgctttatcaactaactttatgtggaaattctaaatcctttgttgtct--tcaacaaaaatgttcacagcatctgcaccaggagtaga-ttctatcaataaaccattcatctgtaagaagcaattcatc------ccaagttttatcatgagattgcagcaaattcagtcacatcttcaggctccacttttaatcctacttctcttgctatttccaccaccagtgtagttacttcctccactgaagcagtgagaacccctcaaagtcatctatgaagtttggaatcaacttcttccaaattcctattcatgttaatattttaacctcctcccatgcatcacaaatgttcttaacagtatctagaataatgaatccttttcagaaggttttcccagatccatcaaaggaataactatcaatggcagctctagcctta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80492172 652 +  99763055 gggtcttgcctcaatgtgcatggctgctgac--ataagggcggt-ggttgctgaaggctgggttaactgtggcaatttcttaaaataagacaaccatgatgtttgccgcatagttcgattcttcctttcatgaaagatttctctgtatcatgtgatgctgtttgataacattttacataccataggagaac-tttcaaaattggagtcaatcctctcaaactctgcctctgctttatcaactaactttatgtggaaattctaaatcctttgttgtct--tcaacaaaaatgttcacagcatctgcaccaggagtaga-ttctatcaataaaccattcatctgtaagaagcaattcatc------ccaagttttatcatgagattgcagcaaattcagtcacatcttcaggatccacttttaatcctgcttctcttgctatttccaccaccagtgtagttacttcctccactgaagcagtgagaacccctcaaagtcatctatgaagtttggaatcaacttcttccaaattcctattcatgttaatattttaacctcctcccatgcatcacaaatgttcttaacagtatctagaataatgaatccttttcagaaggttttcccagatccatcaaaggaataactatcaatggcagctctagcctta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        92451 650 -   1709092 ggttcttgcctcaatgtgcatggctgctgac--ataagggtggt-ggttgctgaaggctgggttaactgtggcaatttcttaaaataagacaaccatgatgtttgccgcatagttcgattcttcctttcatgaaagatttctctgtatcatgtgatgctgtttgacagcattttacctaccataggagaacttttcaaaattggagtcaatcctctcaaactctgcctctgctttatcaactaactttatgtggacattctaaatcctttgttgtct--tcaacaaaaatgttcacagcatctgcaccaggagtaga-ttctatcaataaaccattcatctgtaagaagcaattcat-------ccaagttttatcatgagattgcagcaaattcagtcacatcttcaggctccacttttaattctacttctcttgctatttccaccacctatgtagttacttcctccactgaagcagt--gaacccctcaaagtcatctatgaagtttggaatcaacttcttccaaattcctattcatgttaatatttttacctcctcccatgaatcacaaatgttcttaacagtatctagaataatgaatcctttccagaaggttttcccagatccatcaaaggaataactatcaatggcagctctagcctta
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17252193 651 - 121039945 gggtcttgcctcaatgtgcatggctgctgacttaaaagagtggt-ggttgctgaaggctgggttaactgtggcaatttcttaaaataagacaaccatgatgcttgctgcatagttcgattcttcctttcatgaaagatttctctgtatcatgtgatgctgtttgatagcattttacctaccacaggacagc-tttcaaaattggagtcaatcctctcaaactctgcctctgctttatcaactaagtttatgtggaaattctaaatcctttgttgtct--tcaacaaaaatgttcacagcatatgcaccaggagtaga-ttctatcaacaaaccattcatcagtaagaagcaattcatc------ccaagttttatcatgagattgcagcaaattcagtcacatcttcaagctccacttttaattctacttctcttgctatttccaccatctatgtagttacttcctccactgaagtagt--gaacccctcaaagtcatccatgaagtttggaatcaacttcttccaaattcctattcatgttaatatttttacctcctcccatgaatcacaaatgttcttaacagcatctagaataatgaatcctttccagaaggttttcccagatcc-tcaaaggaataactatcaatggcagctctagcctta
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108459032 652 - 171882078 aggtcttgcctcaatgtgcatggctgctgacttataagggtggt-agttgctaagggttgggttaactgtggtaatttcttaaaatcagacaaccatgatgtttgcttcatagttggattcttcctttcatgaaagatttctctgtatcatgtgatgctgtttgacagcattttacccaccacaggagaac-tttcaaaattggagtcaatcctctcaaactctgcctctgctatatcaactaagtttatgtggaaattctaaatcctttgttgtct--tcaacaaaaatgttcacagcatgtgcaccaggagtaga-ttatatcaagaaaccattcatctgtaagaagcaattcatc------ccaagttttatcatgagattgcagcaaattcagtcacatcttcaggctccacttttaattctacttctcttgctatttccaccacctatgtagttacttcctccaccgaagtagt--gaacccctcaaagtcatccatgaagtttggaatcagcttcttccaaattcctgttcatgttaatattctgacctcctcccatgaatcacaaacgttcttaagagcatctagaataatgagtcctttccagaaggttctcccagatccatcaaaggaataactatggatggcagctctagcctta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        72441 652 -   2311642 gggtcttgcctcaatgtgcatggctgctgacttataagggtggt-agttgctaagggttgggttaactgtggtaatttcttaaaatcagacaaccatgatgtttgcttcatagttggattcttcctttcatgaaagatttctctgtatcatgtgatgctgtttgacagcattttacccaccacaggagaac-tttcaaaattggagtcaatcctctctaactctgcctctgctatatcaactaagtttatgtggaaattctaaatcctttgttgtct--tcaacaaaaatgttcacagcatgtgcaccaggagtaga-ttatatcaagaaaccattcatctgtaagaagcaattcatc------ccaagttttatcatgagattgcagcaaattcagtcacatcttcaggctccacttttaattctacttctcttgctatttccaccacctatgtagttacttcctccactgaagtagt--gaacccctcaaagtcatccatgaagtttggaatcagcttcttccaaattcctgttcatgttaatattctgacctcctcccatgaatcacaaatgttcttaagagcatctagaataatgagtcctttccagaaggttctcccagatccatcaaaggaataactatggatggcagctctagcctta
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        67964 652 -   1987038 gggtcttgcctcaatgtgcatggctgctgacttataagggtggt-agttgctaagggttgggttaactgtggtaatttcttaaaatcagacaaccatgatgtttgcttcatagttggattcttcctttcatgaaagatttctctgtatcatgtgatgctgtttgacagcattttacccaccacaggagaac-tttcaaaattggagtcaatcctctcaaactctgcctctgctatatcaactaagtttatgtggaaattctaaatcctttgttgtct--tcaacaaaaatgttcacagcatgtgcaccaggagtaga-ttatatcaagaaaccattcatctgtaagaagcaattcatc------ccaagctttatcatgagattgcagcaaattcagtcacatcttcaggctccacttttaattctacttctcttgctatttccagcacctatgtagttacttcctccaccgaagtagt--gaacccctcaaagtcatccatgaagtttggaatcagcttcttccaaattcctgttcatgttaatattctgacctcctcccatgaatcacaaatgttcttaagagcatctagaataatgagtcctttccagaaggttttcccagatccatcaaaggaataactatggatggcagctctagcctta
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21148946 652 -  24206276 gggtcttgcctcaatgtgcatggctgctgacttataagggtggt-agttgctaagggttgggttaactgtggtaatttcttaaaatcagacaaccatgatgtttgcttcatagttggattcttcctttcatgaaagatttctctgtatcatgtgatgctgtttgacagcattttacccaccacaggagaac-tttcaaaattggagtcaatcctctcaaactctgcctctgctatatcaactaagtttatgtggaaattctaaatcctttgttgtct--tcaacaaaaatgttcacagcatgtgcaccaggagtaga-ttatatcaagaaaccattcatctgtaagaagcaattcatc------ccaagttttatcatgagattgcagcaaattcagtcacatcttcaggctccacttttaattctacttctcttgctatttccaccacctatgtagttacttcctccactgaagtagt--gaacccctcaaagtcatccatgaagtttggaatcagcttcttccaaattcctgttaacgttaatattctgacctcctcccatgaatcacaaatgttcttaagagcatctagaataatgagtcctttccagaaggttttcccagatccatcaaagcaataactatggatggcagccctagcctta
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        87612 614 -   1784207 gggtcttacctcaatgtgcgtggctgttgacttataagggtggt-agttgctaagggttgggttaactgtggtaatttcttaaaatcagacaaccatgatgtttgcttcatagttggattcttcctttcatgaaagatttctctgtatcatgtgatgctgtttgatagcattttacccaccataggagaac-tttcaaaattggagtcaatcctctcaaactctgcct------------ctaagtttatgtggaaattctaaatcctttgttgtct--tcaacaaaaatgttcacagcatctgcaccagcagtaga-ttctagcaagaaaccattcatctgtaagaagcaattcatc------ccaatttttatcatgagattgcagcaaattcagtcacat------------------------cttctcttgctatttccaccacctatgtagttacttcctccaccgaagtagc--gaacccctcaaagtcatccatgaagtttggaatgagcttcttccaa--tcctgttcatgttaatattctgacctcctcccatgcatcacaaatgttcttaagagcatctagaataatgagtcctttccagaaggttttcccagatccatcaaaggaataactatggatggcagctctagcctta
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22291075 655 + 158406734 gggtcttgcctcaatgtgcatggctgctgacttataagggtggt-ggttgctgaaggctgagttagctgtgtcaatttcttaaaataagacaaccatgatgtttgatgcagagttggattcttcctttcatgaaagatgtctctgtatcatgtgatgctgtttgacagcattttacccaccacaggagaac-tttcaaaattggaatcaatcctctcatactctgcctctgctttatcaactaagtttatgt-gaaattctaagtcctttgttgtcttatcaacaaaaatgttcacaccatctgtaccaggagaagatttctatcaagaaaccattcatctgtaagaagctatttatcatctgttcaagtttt---atgagattacagccaattcagtcacatcttcaggctccacttttcattctacttctcttgctatttccaccacttatgtagctacttcttcctctgaagtatt--gaa-ctgtcaaagtcatccatgaagtttggaatcaacttcttccaaactcctgttcatgttaatcttttgaccttcttccattaatcgtaaatgttcttaacagcatctagaaaaatgaatcctttccagaga-ttttctcagatccatcaaaggaatcactatcgatggcagctctagcttta
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50520783 654 +  54856640 gggtcttgcctcaatgtgcatggctgctgacttataagggtggtgggttgctgaaggctgggttagctgtggcaatttcttaaaataagacaaccatgatgtttgctgcatagttggatttttcctttcatgaaagatttctttgtatcatgtgatgctgtttgacagcattttacccaccacaggagaac-tttcaaaatttgaatcaaacctctcaaactctgcttctgctttatcaactaagtttatgt-gaaattctaagtcctttgttgtcttatcaccaaaaatgttcataccatctgcaccaggagtaga-ttctatcaagaaaccattcatctgtaagaagctattt-tcatctgttcaagtttt---atgagattacagccaattcagtcacaccttcaggctccgcttttcattctacttctcttgctatttcca-cacctatgtagctacttcttcctctaaagtatt--gaa-ccccgaaagtcatccatgaagtttggaatcaacttcttccaaactcctgttcatgtttatcttttgaccttcttccattaatcgaaaatgttcttaacagcttctagaaaaacgaatcctttccagaaagttttctcagatccatcaaaggaatcactatcgatggcagctctagcttta
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40689572 652 +  42888418 gggtcttgcctcaatgtgcatggctgctgacttacaagggtggt-ggctgctgaaggctgggttagctgtggcaatttcttaaaataagacaaccatgatgtttgctgcatagctggattcttcctttcatgaaagatttctctgtatcatgtgatgctgtttgacagcattttacctaccacaggagaac-tttcaaaattggaatcaatcctctcaaactctgcctctgctttatcaactaagtttatgt-gaaattctaagtcctttgttgtcttatcaacaaaaatgttcacaccatctgcaccaggagtaga-ttctatcaagaaaccattcatctgtaagaagctatttatcatctgttcaagttct---atgagatttcagccaatttagtcacatcttcaggctccacttttcattctacttttctagctatttccaccacctatgtagctacttcttcctctgaagtatt--gaa-tcctcaaagtcatccatgaagtttggaatcaacttcttccaaacttctgctcacgttaatcttttgac---cctccattaatcgtaaatgttcttaacagcacctagaaaaatgaatcctttccagaaggttttctcagatccaccgaaggaatcactatggatggcagccctagcttta
i aotNan1.NW_018505940v1    I 140 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e cebCap1.NW_016107610v1       661449 3239 -   2910086 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e rheMac8.chr7               60931899 3725 + 169600520 I

a score=937793.000000
s hg38.chr15_KI270850v1_alt    382817 134 +    430880 tgaaatgta-tttcttaaataataagacttgaaagtaaaaattactccttgatccataggctgc-aaaactgatcttgtgtcagcaggcatgaaatcattaatctccttgtacatctccatcaaagctcgagtgac
s panTro5.chr15              63535889 134 +  83230942 tgaaatgta-tttcttaaataataagacttgaaagtaaaaattactccttgatccataggctgc-aaaactgatcttgtgtcagcaggcatgaaatcattaatctccttgtacatctccatcaaagctcgagtgac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80492824 134 +  99763055 tgaaatgta-tttcttaaataataagacttgaaagtaaaaattactccttgatccataggctgc-aaaactgatcttgtgtcagcaggcatgaaatcattaatctccttgtacatctccatcaaagctcgagtgac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        93101 135 -   1709092 tgaaatgta-tttcttaaataataagacttgaaagtaaaaattactccttgatccataggctgcaaaaactgatcttgtatcagcaggcatgaaatcattaatctccttgtacatctccatcaaagctcgagtgac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17252844 132 - 121039945 tgaaatgta-tttcttaaataataagacttgaaagtaaaaattattccttgatcc--aggctgc-aaaactgatcttgtgtcagcaggcatgaaatcattaatctccttgtacatctccatcaaagcttgagtgac
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108459684 134 - 171882078 ttaaatgta-ttttttcaatggtaaaacttgaaagtaaaaattactccttgatccacaggctgc-aaaacttatcttgtgttagcaggcatgaaatcattaatctctttgtacatctccatcagagctcgagtgac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        73093 129 -   2311642 ttaaatgta-ttttttcaatagtaaaacttgaaagtaaaaattactccttgatccacaggctgc-aaaactta-----tgttagcaggcatgaaatcattaatctctttgtacatctccatcagagctcgagtgac
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        68616 135 -   1987038 ttaaatgtatttttttcaatagtaaaacttgaaagtaaaaattactccttgatccacaggctgc-aaaacttaccttgcgttagcaggcatgaaatcattaatctctttgtacatctccatcagagctcgagtgac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21149598 134 -  24206276 ttaaatgta-tttcttcaatagtaaaacttgaaagtaaaaattactccttgatccacaggctgc-aaaacttatcttgtgttagcaggcatgaaatcattaatttctttgtacatctccatcagagctcgagtgaa
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        88226 134 -   1784207 ttaaatgta-tttcttcaatagtaaaacttgaaagtaaaaattactccttgatccacaggctgc-aaaacttatcttgtgttagcaggcatgaaatcattaatctctttgtacatctccatcagagctcaagtgag
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22291730 130 + 158406734 tgaaatgta-tttcttaaacagtaagacttgaaagtcaaaattactctttgatccacaggctgc-tgaactgatcttgtgttagcaggcatgaaatcatttacctccttgtacatc----tcagagcttgagtgac
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50521437 130 +  54856640 tgaaatgta-tttcttaaacaataagacttgaaagtcaaaattattctttgatccacaggctgc-agaactgatcttgtgttagcaggcatgaaatcattaacctccttgtacatc----tcagagcttcagtgac
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       664688 130 -   2910086 tgaaatgtg-tttcttaaacagtaagacttgaaagtcaaaattactctttgatccacaggctgc-tgaactgatcttgtgtttgcaggtatgaaatcattaacctccttgtacatc----tcagagcttgagtgac
i cebCap1.NW_016107610v1    I 3239 C 0
s aotNan1.NW_018505940v1     40690224 130 +  42888418 cgaaatgta-tttcttaaacaataagactcgaaagtcaaaattactctttgatccacaggctgt-agaactgatcttgtgttagcaggcatgaaatcattaatctccttgtacatc----tcagagcttgagtgac
i aotNan1.NW_018505940v1    C 0 I 23
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e rheMac8.chr7               60931899 3725 + 169600520 I

a score=9117.000000
s hg38.chr15_KI270850v1_alt    382951 5 +    430880 caagt--
s panTro5.chr15              63536023 5 +  83230942 caagt--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80492958 5 +  99763055 caagt--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        93236 5 -   1709092 caagt--
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17252976 5 - 121039945 caagt--
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108459818 5 - 171882078 caagt--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        73222 5 -   2311642 caagt--
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        68751 5 -   1987038 caagt--
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21149732 5 -  24206276 caagt--
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        88360 5 -   1784207 caagt--
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22291860 5 + 158406734 --attgt
i calJac3.chr6              C 0 I 18
s saiBol1.JH378108           50521567 5 +  54856640 --attgt
i saiBol1.JH378108          C 0 I 18
s cebCap1.NW_016107610v1       664818 5 -   2910086 --attgt
i cebCap1.NW_016107610v1    C 0 I 18
e aotNan1.NW_018505940v1     40690354 23 +  42888418 I
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e rheMac8.chr7               60931899 3725 + 169600520 I

a score=3476623.000000
s hg38.chr15_KI270850v1_alt    382956 468 +    430880 gcattgttaatgagcagtaatattatgaaaggaatcccttcttgtctgtacag-t--aagtctcaacagtgggctttaaacattcagttagccatagtgcaaacagatgtgctgtcatgactttattgttcca--tttatagagcacaggcagagtagatttagcatgtttcttaagggccctagaatcttcagaatggtcggtaagcactggcctcaacttt-aaagttaccagtttcattagcctg-taacaagagaatcagcc---tgttcttcaaagctttgaagccagaaactgacttttcctctctagctagg-aaagtcctagatggcatcttcttccaagagaaggctgttttcatctacattgagaatctgttgttgagtgtagccatcttaccaatgatcttagctagatcttctgggtaacttgctgcagcttctccatcagcacttgctgc-ttcatcttgcacattt
s panTro5.chr15              63536028 467 +  83230942 gcattgttaatgagcagtaatattatgaaaggaatccctttttgtctgtgcag-t--aagtctcaacagtgggctttaaacattcagttagccatagtgcaaacagatgtggtgtcatgactttatt-ttcca--tttatagagcacaggcagagtagatttagcatgtttcttaagggccctagaatcttcagaatggtcagtaagcactggcctcaacttt-aaagttaccagtttcattagcctg-taacaagagaatcagcc---tgttcttcaaagctttgaagccagaaactgacttttcctctctagctagg-aaagtcctagatggcatcttcttccaagagaaggctgttttcatctacattgagaatctgttgttgagtgtagccatcttaccaatgatcttagctagatcttctgggtaacttgctgcagcttctccatcagcacttgctgc-ttcatcttgcacattt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80492963 467 +  99763055 gcattgttaatgagcagtaatattatgaaaggaatccctttttgtctgtgcag-t--aagtctcaacagtgggctttaaacattcagttagccatagtgcaaacagatgtgctgtcatgactttatt-ttcca--tttatagagcacaggcagagtagatttagcatgtttcttaagggccctagaatcttcagaatggtcagtaagcactggcctcaacttt-aaagttaccagtttcattagcctg-taacaagagaatcagcc---tgttcttcaaagctttgaagccagaaactgacttttcctctctagctagg-aaagtcctagatggcatcttcttccaagagaaggctgttttcatctacattgagaatctgttgttgagtgtagccatcttaccaatgatcttagctagatcttctgggtaacttgctgcagcttctccatcagcacttgctgc-ttcatcttgcacattt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        93241 471 -   1709092 gcattgttaatgagcagtaatattatgaaaggagtccctttttgtctgtgcag-taaaagtctcaacagtggcctttaaacattcagttagccatagtgcaaacagatgtgctgtcatgactttattgttcca--tttatagagcacaggcagagtagatttagcatgtttcttaagggccctagaatcttcagaatggtcagtaagcactggcctcaacttt-aaagtcaccagtttcattagcctg-taacaagagaatcagcc---tgttcttcaaagctttgaagccagaaactgacttttcctctctagctagg-aaagtcctagatggcatcttcttccaagagaaggctgttttcatctacattgagaatccgttgttgagtgtagccatcttaccaatgatcttagctagatcttctgggtaacttgctgcagcttctccatcagcacttgctgctttcatcttgcacattt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17252981 449 - 121039945 gcattgttaatgagcagtaatattatgaaaggaatccctttttgtctgcgcag-t--aagtctcaacagtgggctttaaacattcagttagccatagtgctaacagatgtgctgtcatgact---------------------gcacaggcagagtagatttagcatgtttcttaagggccctagaatcttcagaatgttcagtaagcactggcctcaacttt-aaagttgccagcttcattagcctg-taacaagagaatcagcc---tgttcttcaaagctttgaagccagaaactgacttttcctctttagctagg-aaagtcctagatggcatcttcttccaagagaaggctgttttcatctgcattgagaatctgttgttgagtgtagccatcttaccaatgatcttagctagatcttctgggtaacttgctgcagcctctccatcagcacttgctgc-ttcatcttgcatattt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108459823 470 - 171882078 gcattgttagtgagtagtaatattatgaaaggaatccctttttgtctgggcag-g--aagtctcaacagtgggctttaaacattcagttaaccatagtgcaaacagatgtgctgtcatgactttattgttcca--tttatagagcacagggagagtagatttagcatgtttcttaagggccctagaatcttcagaatggtcagtaagcactggcctcaac-ct-gaagtcgccagcgtcattagcctg-taacaagataatcagcctgttgttcttcaaagctttgaagccagaaactgacttttcctttctagctagg-aaagtcctagatggcatcttcttccaagagaaggctattttcatctacattgagaatctgttgttgagtgtagccatcttaccaatgatcttagctagatcttctgggtaacctgctgcagcttctccatcagcacttgctgc-ttcatcttgcacattt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        73227 470 -   2311642 gcattgttaatgagtagtaatattatgaaaggaatccctttttgtctgggcag-g--aagtctcaacagtgggctttaaacattcagttaaccatagtgcaaacagatgtgctgtcatgactttattgttcca--tttatagagcacagggagagtagatttagcatgtttcttaagggccctagaatcttcagaatggtcagtaagcactggcctcaac-ct-gaagtcgccagcgtcattagcctg-taacaagataatcagcctgttgttcttcaaatctttgaagccagaaactgacttttcctttctagctagg-aaagtcctagatggcatcttcttccaagagaaggctattttcatctacattgagaatctgttgttgagtgtagccatcttaccaatgatcttagctagatcttctgggtaacctgctgcagcttctccatcagcacttgctgc-ttcatcttgcacattt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        68756 470 -   1987038 gcattgttaatcagcagtaatattatgaaaggaatccctttttgtctgggcag-g--aagtctcaacagtgggctttaaacattcagttaaccatagtgcaaacagatgtgctgtcatgactttattgttcca--tttatagagcacagggagagtagatttagcatgtttcttaagggccctagaatcttcagaatggtcagtaagcactggcctcaac-ct-gaagtcgccagcttcattagcctg-taacaagataatcagcctgttgttcttcaaagttttgaagccagaaactgacttttcctgtctagctagg-aaagtcctagatggcatcttcttccaagagaaggctattttcatctacattgagaatctgttgtttagtgtagccatcttaccaatgatcttagctagatcttctgggtaacctgctgcagcttctccatcagcacttgctgc-ttcatcttgcacattt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21149737 470 -  24206276 gcattgttaatgagcagtaatattatgaaaggaatccctttttgtctgggcag-t--aagtctcaacagtgggctttaaacattcagttaaccacagtgtaaacagatgtgctgtcatgactttattgttcca--tttatagagcacagggagagtagatttagcatgtttcttaagggccctagactcttcagaatggtcagtaagcactggcctcaac-ct-gaagtcgccagcttcattagcctg-taacaagataaccagcctgttgttcttcaaagctttgaagccagaaactgacttttcctttctagctagg-aaagtcctagatggcatcttcttccaagagaaggctattttcatctacattgagaatctgttgttgagtgtagccatcttaccaatgatcttagcttcatcttctgggtaacttgctgcggcttctccatcagcacttgctgc-ttcatcttgcacattt
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        88365 472 -   1784207 gcattgttaatggacagtaatattatgaaaggaatccctttttgtctgggcag-t--aagtctcaacagtgggctttaaacattcagttaaccatagtgcaaacagatgtgctgtcatgactttattgttccatttttatagagcacagggagagtagatttagcatgtttcttaagggccctagaatcttcagaatggtcagtaagcactggcctcaac-tt-gaagtagccagcttcattggcctg-taacaagataatcagctggttgttcttcaaacctttgaagccagaaactgacttttcctttctagctagg-aaagtcctagagggcattttcttccaagagaaggctattttcatctacattgagaatctgttgttgagtgtagccatcttaccaatgatcttagctagatcttctgggtaacttgctgcagcttctccatcagcacttgctgc-ttcatcttgcacattt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22291883 462 + 158406734 gcattgttaatgagtac---tattatgaaaggaatccctttttttctgagcag-t--aagtctcaacagtgggctttaaacattcagttagccatactgcaaacagatgtgctgtcataactttattgttcca--tttacagaacacaggtagagtagatttagcatgtttcttaacggccctagaatcttcagaatggtcagtaagcactggcctcaac-tt-aaagacaacagcttcattagcctgttaacaagagaatcagcc---tgttcttcaaagctttgaagcaagaaacagacttttcctctttagctagg-aaaggcttagatgacatcttct---aaaagaaggctgttttcatctacattgagaatctgttgttgagtgtagccatcttaccaatgatcttagctagatcttctggataacttgctgcagcttctccatcagtacttgctgc-ttcatcttgtacattt
i calJac3.chr6              I 18 C 0
s saiBol1.JH378108           50521590 458 +  54856640 gcactgttaatgagtactaatattatgaaaggaatccctttttttctgagcagtt--aagtctcaacagtgggctttaaacattcagttagccatactgcaaacagatgtgctgccataactttattgttcca--tttatagaacacaggtagagtagatttagcatgtttcttaatggtcctagaatattcagaatggtcagtaagca-------caac-tt-aaagaggccagcttcattagcctg-taacaagagaattagcc---tgttcttaaaagctttgaagccagaaacagactcttcctctttagctagg-aaagtcctagatgacatcttct---aaaagaaggctgtgttcatctacattgagaatctgttgttgagtgtagccatcttaccacttatcttagctagatcttctgaataacttgctgcagcttctccatcagtacttgctgc-ttcatcttgcacattt
i saiBol1.JH378108          I 18 C 0
s cebCap1.NW_016107610v1       664841 452 -   2910086 gcattgttaatgagtactaatattatgaaaggaatccc-ttttttctgagcag-t--aagtctcaacagtgggctttaaacattcagttagccatactgcaaacagatgtgctgtcataactttattgttcca--tttatagaacacaggtagagtagatttagcatgtttcttaacggccctagaatcttcagaatggtcagtaagcactggcctcaac-tt-aaagacgccagcttcattagactg-taacaagacaatcagcc---tgttcttcaaagctttgaagtcacaaa------------ctttagctaggaaaagtcctagatgacatcttct---aaaagaaggctattttcatctacattgagaatctgttgttgagtgtagccatcttaccaatgatcttagctagatcttctggataacttgctgcagcttctccatcagtacttactgc-ttcatcttgcacattt
i cebCap1.NW_016107610v1    I 18 I 80
s aotNan1.NW_018505940v1     40690377 464 +  42888418 gcattgttaatgactactaatattatgaaaggaatccc-ttttttctgagcag-t--aagtttcaacagtgggctttaaacattcagttagccatactgcaaacagatgtgctgtcataactttattgttcca--tttatagaacacaggcagagtagatttagcatgtttctgaacggccctagaatcttcagaatggtcagtaagcactggcctcaac-ttaaaagacaccagcttcattagcctg-taacaagagaatcagcc---tgtccttcaaagctttgaagccagaaacagacttttcctctttagctggg-aaagtcctagatgacatcttct---aagagaaggctgttttcatctacactgagaatctgttgttgagtgtagccatcttaccaatgatcttagctagatcttctggataacttgttgcagcttctccatcagtacttgctgc-ttcatcttgcacattt
i aotNan1.NW_018505940v1    I 23 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e rheMac8.chr7               60931899 3725 + 169600520 I

a score=96479.000000
s hg38.chr15_KI270850v1_alt    383424 20 +    430880 atgttacggagacagc----ttct
s panTro5.chr15              63536495 20 +  83230942 atgttacggagacagc----ttct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80493430 20 +  99763055 atgttacggagacagc----ttct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        93712 20 -   1709092 atgttacggagacagc----ttct
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17253430 20 - 121039945 atgttatggagacagc----ttct
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108460293 20 - 171882078 atgttatggagacaga----ttct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        73697 20 -   2311642 atgttacggagacaga----ttct
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        69226 20 -   1987038 atgttacggagacaga----ttct
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21150207 20 -  24206276 atgttacggagacaga----gtct
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        88837 20 -   1784207 atgttacggagacaga----ttct
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22292345 16 + 158406734 acgttatggagacaga--------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50522048 16 +  54856640 atgttacagagacaga--------
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40690841 20 +  42888418 atgttacggagacagatgga----
i aotNan1.NW_018505940v1    C 0 I 49
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e cebCap1.NW_016107610v1       665293 80 -   2910086 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e rheMac8.chr7               60931899 3725 + 169600520 I

a score=67474.000000
s hg38.chr15_KI270850v1_alt    383444 42 +    430880 tcccttaaac--------ct-cat-gaacc--aaaaa---------aaaagaaaagaaaagaa---
s panTro5.chr15              63536515 44 +  83230942 tcccttaaac--------ct-cat-gaaccaaaaaaa---------aaaaaaaaagaaaagaa---
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80493450 44 +  99763055 tcccttaaac--------ctacatagaacc--aaaaa---------aaaaaaaaagaaaagaa---
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        93732 42 -   1709092 tcccttaaac--------ct-cac-gaacc--aaaaa---------aaaaaaaaaaaaaaaga---
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17253450 51 - 121039945 tcccttaaac--------ct-cat-gaacc--aaaaaaaaagaaagaaaaaaaaagaaaagaa---
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108460313 31 - 171882078 tcctttaaac--------ct-cat-gaacc----------------------aaaaaaaagaa---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        73717 31 -   2311642 tcctttaaac--------ct-cat-gaacc----------------------aaaaaaaagaa---
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        69246 33 -   1987038 tcctttaaac--------ct-cat-gaacc--------------------aaaaaaaaaagaa---
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21150227 47 -  24206276 tcctttaaac--------ct-cat-gaaaa--aaaaaaaaaa----aaaaaaaaaagaaagaa---
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        88857 47 -   1784207 tcctttaaac--------cc-cat-gaacc--aaaaaaaaga----agaagaagaaaaaaaaa---
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22292361 53 + 158406734 -----tggacggacatgaca-gat-ggatg--gaagtatgga----aaggaggaaggaagggaggg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50522064 53 +  54856640 -----tggatggacgggacg-gat-ggatg--gaaggatgga----aaggaggaagggagggaggg
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018505940v1     40690861 49 +  42888418 I
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e cebCap1.NW_016107610v1       665293 80 -   2910086 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e rheMac8.chr7               60931899 3725 + 169600520 I

a score=6410083.000000
s hg38.chr15_KI270850v1_alt    383486 883 +    430880 aagaaaaagaaaaacctcatgaaccaacctctgctagcttccaaattttcttgtgcagcttcctcacctctctcagccttctcag-----aagagtgttagggcc-ttcctctggattaagttttggcataagggaatgttgtggctgatctgatcttctatctcgactactcaaactttcccatatcagcaaaaagcctgtcttgctttcttatcattcatgtgcttacctgagtagcccttttag-tttactgcaggaacttgtgccttgcattcacagcttgactatttggaacaagaggcctaactttcggcctaccacagctttcgacatgtcttcctcactaagcttcatcatttctagtttttgatgtaaactgagacacatgtgactcttcccttcacttgaacactt-agaggccattgtagggttattaattttcctaatttcaattttgttgtgtgtcaggaaagagggaggcccaag-aaagtgggagagagacaggagaacggccgactggtggagcagtcacagcatacacaaagtttatcaattaagttcaccatcttacatgggaatggtttgtggcatgccaaaacaattacaat-agcagcaaagcaac-agt------aaaataagttggaaatattggaagaattaccagaatgtggcacagaaacatgaagtaagcacatactttttgaaaaatggcaccaacagacttgttcaacacaggattaccacaaaccttcaatttgtataaaacgctg-tatctgtgaggtgtgat-aaaataaagcacaataatatgaggtatgcctgtactacattctgttcatccattcatcaccagttaatagacatttggattgtttccacatttgggatattatgaac
s panTro5.chr15              63536559 885 +  83230942 aagaaaaagaaaaacctcatgaaccaacctctgctagcttccaaattttcttgtgcagcttcctcacctctctcagccttctcag-----aagagtgttagggcc-ttcctctggattaagttttggcttaagggaatgttgtggctgatctgatcttctatctcgactactcaaactttcccatatcagcaaaaagcctgtcttgcttttttatcattcatgtgcttacctgagtagcccttttag-tttactgcaggaacttgtgctttgcattcacaacttgactatttggaacaagaggcctaactttcggcctaccacagctttcgacatgccttcctcactaagcttcatcatttctagtttttgatgtacactgagacacatgtgactcttcccttcacttgaacactt-agaggccattgtagggttattaattttcctaatttcaattttgttgtgtgtcaggaaagagggaggcccaagaaaagtgggagagagacaggagaacggccgactggtggagcagtcacagcatacacaaagtttatcaattaagttcactatcttgcatgggaatggtttgtggcatgccaaaacaattacaat-agcagcaaagcaac-agt-----aaaaaaaagttggaaatattggaagaattaccagaatgtggcacagaaacatgaagtaagcacatactttttgaaaaatggcaccaacagacttgttcaacacaggattaccacaaaccttcaatttgtataaaacgctg-tatctgtgaggtgtgat-aaaataaagcacaataatatgaggtacgcctgtactacattctgttcatccattcatcaccagttaatagacatttggattgtttccacatttgggatattatgaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80493494 885 +  99763055 aagaaaaagaaaaacctcatgaaccaacctctgctagcttccaaattttcttgtgcagcttcctcacctctctcagccttctcag-----aagagtgttagggcc-ttcctctggattaagttttggcttaagggaatgttgtggctgatctgatcttctatctcgactactcaaactttcccatatcagcaaaaagcctgtcttgcttttttatcattcatgtgcttacctgagtagcccttttag-tttactgcaggaacttgtgctttgcattcacaacttgactatttggaacaagaggcctaactttcggcctaccacagctttcgacatgccttcctcactaagcttcatcatttctagtttttgatgtaaactgagacacatgtgactcttcccttcacttgaacactt-agaggccattgtagggttattaattttcctaatttcaattttgttgtgtgtcaggaaagagggaggcccaagaaaagtgggagagagacaggagaacggccgactggtggagcagtcacaacatacacaaagtttatcaattaagttcactatcttgcatgggaatggtttgtggcatgccaaaacaattacaat-agcagcaaagcaac-agt-----aaaaaaaagttggaaatattggaagaattaccagaatgtggcacagaaacatgaagtaagcacatactttttgaaaaatggcaccaacagacttgttcaacacaggattaccacaaaccttcaatttgtataaaacgctg-tatctgtgaggtgtgat-aaaataaagcacaataatatgaggtatgcctgtactacattctgttcatccattcatcaccagttaatagacatttggattgtttccacatttgggatattatgaac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        93774 882 -   1709092 aaagaaaagaaaaacctcatgaaccaacctctgctagcttccaaattttcttgtgcagcttcctcacctctctcagccttctcag-----aagagtgttagggcc-ttcctctggattaagttttggcttaagggaatgttgtggctgatctgatcttctatctagactactcaaactttcccatatcagcaaaaagcctgtcttgctttcttatcattcatgtgcttacctgagtagcccttctag-tttactgctggaacttgtgctttgcattcacaacttgactatttggaacaagaggcctaactttcggcctaccacagctttcgacatgccttcctca-taagcttcatcatttctagtttttgatgtaaactgagagacatgtgactcttcccttcacttgaacactt-agaggccactgtagggttattaattttcctaatttcaattttgttgtgtgtcaggaaatagggaggcccaagaaaagtgggagagagacaggagaacggccgactggtggagcagtcacagcatacgcaaagtttatcaattaagttcaccatcttacat-ggaatggtttgtggcatgccaaaacaattacaat-agcagcaaagcaat-agt------aaaaaaagttggaaatattggaagaattaccagaatgtggcacagaaacatgaagtaagcacatactttttgaaaaatggcaccaacagacttgttcaacacaggattaccacaaaccttcaatttgtataaaacgctg-tatctgtgaggggtgat-aaaataaagcacaataatatgaggtatgcctgtgctacattctgttcatccattcatcaccagttaatagacatttggactgtttccacatttgggatattatgaac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17253501 880 - 121039945 aagaaaaagaaaaacctcatgaactaacctctgctagcttccaaattttcttgtgcagcttcctcacctctctcagccttctccg-----aagagtgttagggcc-ttcctctggattaagttttggcttaagggaatgttgtggctgatctgatcttctatctagactactcaaactttcccatatcagcaaaaagcctgtcttgctttcttatcattcatgtgcttaccagagtagcccttttag-tttactgcaggaacttgtgctttgcattcacaacttgactatttggaacaagaggcctaactttcggcctaccacagctttcgacatgccttcctcactaagcttaatcatttctagtttttgatgtaaactgagagacctgtgactcttcccttcacttgaatactt-agaggccattgtagggttattaatttgcctaatttcaattttgttgtgtgtcaggaaatagggaggcccaagaaaagtgggagagagacaggagaacggccaactggtggagcagtcacagcatacacaaagtttatcaattaagttcaccatcttacatgggaatggtttgtggcatgccaaaacaattacaat-agtggcaaagcaat-agt-----aaaaaaaagttggaaatattggaagaattaccagaatgtggcacagaaacatgaagtaagcacatactttttgaaaaatggcaccaacacacttgttcaacacaggattaccacaaaccttcaatttgtataaaacgctg-tgtctgcgaggtgtg------ataaagcacaataatatgaggtatgcctgtactacattctgttcatccattcatcaccagttaatagacatttggattgtttccacatttgggatattatgaac
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108460344 880 - 171882078 aagaaaaagaaaaacctcatgaactaacctctgctagcttccaaattttcttctgcagcttcctcacctctctcagccttctcag-----aagagtgctggggcctttcctctggatcaggttttggcttaagggaatgttgtggctgatctgatcttctatctagactactcaatctttcccatatcagcaaaaagtctgtcttgctttcttatcattcatgtgcttaccggagtagcccttttag-ttcactgcaagaacttgtgctttgcattcacaacttgactatttggaacaagaggcctaactttcggcctaccacagctttcgacatgccttcctcactaaaattaatcatttctagtttttgatgtaaactgagagacatgtgactcttcccttcacttgaacactt-agaggccactatagggttattaatttgcctactttcaattttgttgtgtctc-------agggaggcccaagaaaagtaggagagagacaggagaacggccaactggtggagcagtcacagcaaacacaacgtttatcaattaagttcaccatcttacacggaaatggtttgtggcacgccaaaacaattacaagaagtagcaaagcaat-agt------aaaaaaagttggaaatattggaagaattatcagaatgtggcaaagaaacatgaaggaagcacatactttttgaaaaatggcaccaacagacttgttcaacacaggattaccacaaaccttcaatctgtataaaatgctgttatctgtgaagcatgat-aaaataaagcaccataatatgaggtatgcctgtactacattctattcatccattcatcaccagttgatagacatttgggttgtttccacatttgggatattatgaac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        73748 880 -   2311642 aagaaaaagaaaaacctcatgaactaacctctgctagcttccaaattttcttctgcagcttcctcacctctctcagccttctcag-----aagagtgctggggcctttcctctggatcaggttttggcttaagggaatgttgtggctgatctgatcttctatctagactactcaatctttcccatatcagcaaaaagtctgtcttgctttcttatcattcatgtgcttaccagagtagcccttttag-ttcactgcaagaacttgtgctttgcattcacaacttgactatttggaacaagaggcctaattttcggcctaccacagctttcaacatgccttcctcactaaaattaatcatttctagtttttgatgtaaactgagagacatgtgactcttcccttcacttgaacactt-agaggccactatagggttattaatttgcctactttcaattttgttgtgtctc-------agggaggcccaagaaaagtaggagagagacaggagaacggtcaactggtggagcagtcacagcaaacacaacgtttatcaattaagttcaccatcttacacggaaatggtttgtggcacgccaaaacaattacaagaagcagcaaagcaat-agt------aaaaaaagttggaaatattggaagaattatcagaatgtggcaaagaaacatgaaggaagcacatactttttgaaaaatggcaccaacagacttgttcaacacaggattaccacaaaccttcaatctgtataaaatgctgttatctgtgaagcatgat-aaaataaagcaccataatatgaggtatgcctgtactacattctattcatccattcatcaccagttgatagacatttaggttgtttccacatttgggatattatgaac
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        69279 880 -   1987038 aagaaaaagaaaaacctcatgaactaacctctgctagcttccaaattttcttctgcagcttcctcacctctctcagccttctcag-----aagagtgctggggcctttcctctggatcaggttttggcttaagggaatgttgtggctgatctgatcttctatctagactactcaatctttcccatatcagcaaaaagtctgtcttgctttcttatcattcatgtgcttaccggagtagcccttttag-ttcactgcaagaacttgtgctttgcattcacaacttgactatttggaacaagaggcctaactttcggcctaccacagctttcgacatgccttcctcactaaaattaatcatttctagtttttgatgtaaactgagagacatgtgactcttcccttcacttgaacactt-agaggccactatagggttattaatttgcctactttcaattttgttgtgtctc-------agggaggcccaagaaaagtaagagagagacaggagaacggccaactggtggagcagtcacagcaaacacaacgtttatcaattaaattcaccatcttacacggaaatggtttgtggcacgccaaaacaattacaagaagtagcaaagcaat-agt------aaaaaaagttggaaatattggaagaattatcagaatgtggcaaagaaacatgaaggaagcacatactttttgaaaaatggcaccaacagacttgttcaacacaggattaccacaaaccttcaatctgtataaaatgctgttatctgtgaagcatgat-aaaataaagcaccataatatgaggtatgcctgtactacattctattcatccattcataaccagttgatagacatttgggttgtttccacatttgggatattaagaac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21150274 881 -  24206276 aagaaaaagaaaaacctcatgaactaacctctgctagcttccaaattttcttctgcagcttcctcacctctctcagccttctcag-----aagagtgctggggcctttcctctggatcaggttttggcttaagggaatgttgtggctgatctgatcttctatctagactactcaatctttcccgtatcagcaaaaagtctgtcttgctttcttatcattcatgtgcttactggagtagcccttttag-ttcactgcaagaacttgtgctttgcattcacaacttgactatttggaacaagaggcctaactttcggcctaccacagctttcgacatgccttcctcactaaaattaatcatttctagtttttgatgtaaactgagagacatgtgactcttcccttcacttgaacactt-agaggccactatagggttattaatttgcctactttcaattttgttgtgtctc-------agggaggcccaagaaaagtaggagagagacaggagaacggccaactggtggagcagtcacagcaaacacaacgtttatcaattaagttcaccatcttacacagaaatggtctgtggcacgccaaaacaattacaagtatcatcaaagcaataagt------aaaaaaagttggaaatattggaagaattatcagaatgtggcaaagaaacatgaagcaagcacatactttttgaaaaatggcaccaacagacttgttcaacacaggattaccacaaaccttcaatctgtataaaatgctgttatctgtgaagcgtgat-aaaataaagcaccataatatgaggtatgcctgtactacattctattcatccattcatcaccagttgatagacatttgggttgtttccacatttgggatattatgaac
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        88904 876 -   1784207 gaaaaaaagaaaaacctcatgaactaacctctgttagcttccaaattttcttctgcagcttcctcacctctctcagccttctcag-----aagagtgttggggcctttcctctggatcaggttttggtttaagggaatgttgtggctgatctgatcttctatatagactactcaatctttcccatatcagcaaaaagtctgtcttgctttcttatcactcatgtgcttaccggagtagcccttttag-ttcactgcaagaacttgtgctttgcattcacaacttgactatttggaataagaggcctaactttcggcctaccacagctttcgacatgccttcctcactaaaattaatcatttctagtttctgacgtaaactgagagacatgtgactcttcccttcacttgaacactt-agaggccactatagggttattaatttgcctaatttcaattttgttgtgtctc-------agggaggcccaagaaaagtaggagagagacaggagaacagccaactggtggagcagtcacagcaaac---acgtttatcaattaagttcaccatcttacacggaaatggtttgtggcatgccaaaacaattacaag-agtggcaaagcaat-agt------aaaaaaagttggaaatattggaagaattaccagaatgtggcaaagaaacatgaagcaagcacatactttttgaaaaatggcaccaacagacttgttcaacacaggattaccacaaaccttcaatttgtataaaatgctgttatctgtgaagcgtgat-aaaataaagcacaataatatgaggtatgcctgtactacattctattcatccattcatcaccagttgatagacatttgggttgtttccacatttgggatattatgaac
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22292414 848 + 158406734 aggaaaaagaaaaacctcatgaacaaacctctgctagcttccaaattttcttctgcagcttccttacctctctcagccttcatagaagacaagagtctttgagat-ttcctctggattaggctttggtttaaggaaatgttgtggctgatctgatct-----------------------------tcagcaaaaagcctgtctcgctttcttattattcatgt-------------gcccttttag-tttactgcaggaacttgtgctttgcattcacaacttgactacttggaacaagaggcctaactttcagcctaccatggctattgacatgccttcctcactaagcttaatcatttccagtctttgatttaaactgagagacatgtgactcttcccttcacttgaacactt-agagaccactttaatgttattaattggcctaatttcaattttgttgtgtctcagggaacagggaggcccaagaaaagtgg--gagagacagaagaatggtcgactggtggagaagtcacagcacacaca---tttaccaattaagttcagcatcttacatgggaatcatttgtggcatgccaaaacaattacaac-agtggcaaagcaat-agtt-aaaaaaaaaaagatgaaaatattgggataattactagaatgtagcacagaaacatgaagtaagcacatactttttgaaaaatggcagcaacagatttgtccaacacaggattaccacaaaccttcaatttgtataaaattgtg-tatctgtgagatgtgataaaaataaaacacaataatatgaggtatgccAGtactacattctgttcatccattcatcgctggttaatagacatttgggttgtttccacatttgggatattatgaac
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50522117 891 +  54856640 aggaaaaagaaaaacctcatgaaccaacctctgctagcttccaaattttcttatgcagcttccttacctctctcagtctccacagaagagaagagtgttagagat-ttcctctggattaggctttggcttaagggaatgttgtagctgatctgatcttctacccagaccactcaaactttcccatatcagcaaaaagcctgtctcattttcttattattcatgtgcttactggagtagcccttttag-tttactgcaggaacttgtgatttgcattcacaacttcactatttggatcaagaggcctaactttcagcctaccatggcttttgacatgccttcctcactaagcttaatcatttccagtctttcatttaaactaagagacatgtgactcttcccttcacttgaacactt-agagaccattgtagggttattaattggcctaatttcaattttgttgtgtctcagggaatagggaggcccaagaaaagtgg--gagagacaggagaatggtcgactggtagagcagtcacagcacacaca---tttatcaattaagttcagcatgttacatgggaatcatttgtggcacgccaaaacaattacaac-agtggcaaagcaat-agttcaaaaaaaaaaagatgaaaatattgggagaattaccagaatgtagcacagaaacatgaagtaagcacatactttttgaaaaatggcaccaacagatttgtccaacacagaattaccacaaaccttacatttgtgtaaaatggtg-tatctgtgaggtgtgataaaaataaaacacagtaatatgaggtatgccaatactacattctgttcatccattcaccaccggttaatagacatttaggttgtttccacatttgggatattatgaac
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       665373 888 -   2910086 aggaaaaagaaaaacctcatgaaccaacctctgctagcttccaaattttcttctgcagcttccttacctctctcagccttcatagaagagaagagtgttagagat-ttcctctaggttacgctttggcttaagggaatgttgtggctgatctgatcttctatccagaccactcaaactttcccatatcagcaaaaagcctgtctcgctttcttattattcatgtgcttaccagagtagcccttttagttttactgcaggaacttgtgctttgcattcacaactggactatttggaacaagaggcctaactttcagcctaccatggcttttgacatgccttcctcactaagcttaatcatttccagtctttgatttaaactgagagacaggtgactcttcccttgacttgaacactt-agagaccattgtagggttattagttggcctatcttcaattttgttgtgtctcagggaatagggaggaccaagaaaagtgg--gagagacaggagaatggtcaactggtagaacagtcacagcacataca---tttatcaattaagttcagcatcttacatgggaatcatttgtggcaagccaaaataattacaac-agtggcaaagcaat-agtt----aaaaaaaagatgaaaatattgggagaattactagaatgtagcacagaaacatgaagtaagcacatactttttgaaaaatggcaccaatagatttgtccaacacaggattaccacaaaccttatatttgtgtaaaatggtg-tatctgtgacgtgtgatcaaaataaaacacaataatatgaggtatgccAatactacattctgttcatccattcaccaccggttaatagacatttgggttgtttccacatttgggatattatgaac
i cebCap1.NW_016107610v1    I 80 C 0
s aotNan1.NW_018505940v1     40690910 885 +  42888418 aggaaaaagaaaaacctcatgaaccaacctctgctagcttccaaattttcttctgcagcttccttacctctctcagccttcatagaagagaagagtgttagagat-ttcctctggattaggctttggcttaagggaatgttgtggctgatctgatcttctatccagaccactcaaactttccggtatcagtaaaaagcctgtc----tttcttatcattcatgtgcttaccggagtagcccttttag-tttactgtaggaacttgtgctttgcattcacaacttgactatctgacacaagaggcctaactttcagcctaccatggcttttgacatcccttactcactaagcttaatcatttccagtctttgatttaaactgagagacatgtgactcatcccttcacttgaacacttaagagaccactgtagggttattaattggcctaatttcaattttgttgtgtctcagggaatagggaggcccaagaaaagtgg--gagagacaggagaatggtcaactggtggagcagtcacagcacacaca---tttatcaattaagttcagcatcttacatggaaatcatttgtggcacaccaaaacaattacaac-agtggcaaagcaat-agtt---aaaaaaaaagatgaaaacattgggagaattactagaatgtagcacagaaacatcaagtaaacacatattttttgaaaaatggcaccaacagatttgcccaacacaagattaccacaaaccttcaatttgtataaaatggtg-tatctgtgaggtgtgataaaaataaaacacaataatatgatgtacgccAGTCctacattctgttcatctattcatcaccggttaatagacatttgggttgtttccacatttgggatattatgaac
i aotNan1.NW_018505940v1    I 49 I 65
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e rheMac8.chr7               60931899 3725 + 169600520 I

a score=24756.000000
s hg38.chr15_KI270850v1_alt    384369 4 +    430880 gaca
s panTro5.chr15              63537444 4 +  83230942 gaca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80494379 4 +  99763055 gaca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        94656 4 -   1709092 gaca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17254381 4 - 121039945 aaca
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108461224 4 - 171882078 aaca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        74628 4 -   2311642 aaca
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        70159 4 -   1987038 aaca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21151155 4 -  24206276 aaca
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        89780 4 -   1784207 aaca
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22293262 4 + 158406734 aaca
i calJac3.chr6              C 0 I 44
s saiBol1.JH378108           50523008 4 +  54856640 aaca
i saiBol1.JH378108          C 0 I 44
s cebCap1.NW_016107610v1       666261 4 -   2910086 aaca
i cebCap1.NW_016107610v1    C 0 I 64
e aotNan1.NW_018505940v1     40691795 65 +  42888418 I
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e rheMac8.chr7               60931899 3725 + 169600520 I

a score=36678.000000
s hg38.chr15_KI270850v1_alt    384373 13 +    430880 ---------ctgtt--acaaatgc
s panTro5.chr15              63537448 15 +  83230942 ---------ctgttacacaaatgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80494383 13 +  99763055 ---------ctgtt--acaaatgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        94660 13 -   1709092 ---------ctgtt--acaaatgc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17254385 13 - 121039945 ---------ctgtt--acaaatgc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108461228 13 - 171882078 ---------ctgtt--ataaatgc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        74632 13 -   2311642 ---------ctgtt--ataaatgc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        70163 13 -   1987038 ---------ctgtt--ataaatgc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21151159 13 -  24206276 ---------ctgtt--atgaatgc
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        89784 13 -   1784207 ---------ctgtt--ataaatgc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22293310 20 + 158406734 ctggga--cctccc--ccaagtta
i calJac3.chr6              I 44 C 0
s saiBol1.JH378108           50523056 22 +  54856640 ctgggacccccccc--ccaaatta
i saiBol1.JH378108          I 44 C 0
e aotNan1.NW_018505940v1     40691795 65 +  42888418 I
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e cebCap1.NW_016107610v1       666265 64 -   2910086 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e rheMac8.chr7               60931899 3725 + 169600520 I

a score=13032.000000
s hg38.chr15_KI270850v1_alt    384386 2 +    430880 cc
s panTro5.chr15              63537463 2 +  83230942 cc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80494396 2 +  99763055 cc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        94673 2 -   1709092 cc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17254398 2 - 121039945 cc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108461241 2 - 171882078 cc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        74645 2 -   2311642 cc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        70176 2 -   1987038 cc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21151172 2 -  24206276 cc
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        89797 2 -   1784207 cc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22293330 2 + 158406734 cc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50523078 2 +  54856640 ac
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       666329 2 -   2910086 cc
i cebCap1.NW_016107610v1    I 64 C 0
e aotNan1.NW_018505940v1     40691795 65 +  42888418 I
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e rheMac8.chr7               60931899 3725 + 169600520 I

a score=266044.000000
s hg38.chr15_KI270850v1_alt    384388 43 +    430880 acctataagtttttgtatgaacattcgttttcatttc------tcttaa
s panTro5.chr15              63537465 43 +  83230942 acctataagtttttgtatgaacatacgttttcatttc------tcttaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80494398 43 +  99763055 acctataagtttttgtatgaacatacgttttcatttc------tcttaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        94675 43 -   1709092 acctgtaagtttttgtatgaacatacgttttcatttc------tcttaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17254400 43 - 121039945 acctacaagtttttgtatgaacatgcgttttcatttc------tcttaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108461243 43 - 171882078 atgtacaagtttttgtatgaacgtgcgttttcatttc------tcttaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        74647 43 -   2311642 atgtacaagtttttgtatgaacgtgcgttttcatttc------tcttaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        70178 43 -   1987038 atgtacaagtttttgtatgaacgtgtgttttcacttc------tcttaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21151174 43 -  24206276 atgtacaagtttttgtatgaatgtgcgttttcatttc------tcttaa
i chlSab2.chr29             C 0 C 0
s colAng1.NW_012117110v1        89799 43 -   1784207 atgtacaagtttttgtatgaacttgcattttcatttc------tcttaa
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22293332 49 + 158406734 acatacaagtttttgtatgaacatgcattttcatttcagtacataccta
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50523080 49 +  54856640 aaatacaagtttttgtatgaacatgcattttcatttcagtacatacctg
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       666331 49 -   2910086 acatacaagtttttgtatgaacatgcattttcatttcagtacataccta
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40691860 49 +  42888418 acctacaagtttttgtatgaacatgcattttcatttcagtacataccta
i aotNan1.NW_018505940v1    I 65 C 0
e mm10.chr7                  81401067 2019 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e rheMac8.chr7               60931899 3725 + 169600520 I

a score=3486092.000000
s hg38.chr15_KI270850v1_alt    384431 428 +    430880 ggagtgaatttctgggtcacatggtga----------ttaaccttgagtaaccgccaaattgttttccaaaacagctgcaacatttcacattagcaatgtataagagtttcactttttctacatcctgatcaacaattgttactgcctttttgcta--caggcatcctacc-aggtgtaaagaggctcca-ctgttcaaagattggaccatctaaacaaaaaagggtaactgcaatggatcaagacacatcaaacacattaaatctatgagttcacaatgatactaaaaaacaacttactggtcaactttggagaatgctagacaatcagctcaatattatgaaagaaagtaaagtaa-aat-----aagcatttaattg-----------tgcttgattatttgaagaaacgttctcttctggtttaccaaatagttcatgaaattaagtttattttt
s panTro5.chr15              63537508 428 +  83230942 ggagtgaatttctgggtcacatggtga----------ttaaccttgagtaaccgccaaattgttttccaaaacagctgcaacatttcacattagcaatgtataagagtttcactttttctacatcctgatcaacaattgttactgcctttttgcta--caggcattctacc-aggcataaagaggctcca-ctgttcaaagattggaccatctaaacaaaaaagggtaactgcaatggatcaagacacatcaaacacattaaatctatgagttcacaatgatactaaaaaacaacttactggtcaactttggagaatcctagacaatcagctcaatattatgaaagaaagtaaagaaa-aat-----aagcatttaattg-----------tgcttgattatttgaagaaacgttctcttctggtttaccaaatagttcatgaaattaagtttattttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80494441 428 +  99763055 ggagtgaatttctgggtcacatggtga----------ttaaccttgagtaaccgccaaattgttttccaaaacagctgcaacatttcacattagcaatgtataagagtttcactttttctacatcctgatcaacaattgttactgcctttttgcta--caggcattctacc-aggcgtaaagaggctcca-ctgttcaaagattggaccatctaaacaaaaaagggtaactgcaatggatcaagacacatcaaacacattaaatctatgagttcacaatgatactaaaaaacaacttactggtcaactttggagaatcctagacaatcagctcaatattatgaaagaaagtaaagaaa-aat-----aagcatttaattg-----------tgcttgattatttgaagaaacgttctcttctggtttaccaaatagttcatgaaattaagtttattttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        94718 428 -   1709092 ggagtgattttctgggtcacatggtga----------ttaaccttgagtaaccgccaaattgttttccaaaacagctgcaacatttcacattagcaatgtataagagtttcactttttctacatcctgatcaacaattgttactgcctttttgcta--caggcatcctacc-aggcatgaagaggctcca-ctgttcaaagattggacgatctaaacaaaaaagggtaactgcaatggatcaagacacatcaaacacattaaatctatgagttcacaatgatactaaaaaacaacttactggtcaactttggagaatgctagacaatcagctcaatattatgaaagaaagtaaagaaa-aat-----aagcatttaattg-----------tgcttgattatttgaagaaacgttctcttctggtttaccaaatagttgatgaaattaagtttattttt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17254443 432 - 121039945 ggagtgaatttctgagtcacctggtga--ttc----tttaaacttgagtaaccgccaaattgttttccaaaacagttgcaacatttcacattagcaatgtataagagtttcactttttctacatcctgatcaacaattgttactgcctttttgcta--caggcatcctacc-aggtgtaaagaggctcca-ctgttcaaagattggacgatctaaacaaaaaagggtaactgcaatggatcaagacacatcaaacacattaaatctatgagttcacaatgatactaaaaaacaacttactggtcaactttggagaatgctagagaatcagctcaatattatgaaagaaagtaaagaaa-aat-----aagcatttaattg-----------tgcttgattatttgaagaaaagttctcttctggtttaccaaatagttgatgaaattaagtttattttt
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108461286 436 - 171882078 ggagtgaatttctgggtcacatggtga--ttccttgtttaaccttgagtaaccgccaaattgttttccaaagcagctgcaacatttcacattagcaatgtataagagtttcactttttctacatcctgatcaacaattgttactgcctttttgcta--caggcatcctacc-aggtgtaaagaggctcca-ctgttcaaagattggacaatctaaacaaaaatgggtaactgcaatggatcaagacacaccaaacacattaaatctatgagttcacaatgatactaaaaaacaacttactggtcagctctggagaatgctagagaattagctcaatactatgaaagaaagtaaagaaa-aat-----aggcatttaattg-----------tgcttgattatgtgaagaaacgttctcttctggtttaccaaatagttgatgaaattaagtttattttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        74690 436 -   2311642 ggagtgaatttctgggtcacatggtga--ttccttgtttaaccttgagtaaccgccaaattgttttccaaagcagctgcaacatttcacattagcaatgtataagagtttcactttttctacatcctgatcaacaattgttactgcctttttgcta--caggcatcctacc-aggtgtaaagaggctcca-ctgttcaaagattggacaatctaaacaaaaatgggtaactgcaatggatcaagacacaccaaacacattaaatctatgagttcacaatgatactaaaaaacaacttactggtcagctctggagaatgctagagaattagctcaatactatgaaagaaagtaaagaaa-aat-----aggcatttaattg-----------tgcttgattatgtgaagaaacgttctcttctggtttaccaaatagttgatgaaattaagtttattttt
i macNem1.NW_012011945v1    C 0 I 312
s cerAty1.NW_012002657v1        70221 436 -   1987038 ggagtgaatttctgggtcacatggtga--ttccttgtttaaccttgagtaaccgccaaattgttttccaaagcagctgcaatatttcacattagcaatgtataagagtttcactttttctacatcctgatcaacaattgttactgcctttttgcta--caggcatcctacc-aggtgtaaagaggctcca-ctgttcaaagattggacaatctaaacaaaaatgggtaactgcaatggatcaagacacaccaaacacattaaatctatgagttcacaatgatactaaaaaacaacttactggtcagctctggagaatgctagagaattagctcaatactatgaaagaaagtaaagaaa-aat-----aggcatttaattg-----------tgcttgattatgtgaagaaacgttctcttctggtttaccaaatagttgatgaaattaagtttattttt
i cerAty1.NW_012002657v1    C 0 I 312
s chlSab2.chr29              21151217 447 -  24206276 ggagtgaatttctgggtcacatggtga--ttctttgtttaaccttgagtaaccgccaaattgttttccaaagcagctgcaacatttcacattagcaatgtataagagtttcactttttctacatcctgatcaacaattgttactgccttttggcta--caggcatcctacc-aggtgtaaagaggctcca-ctgttcaaagattggacaatctaaacaaaaaagggtaactgcaatggatcaagacacaccaaacacattaaatctatgagttcacaatgatactaaaaaacaacttactggtcagctctggagaatgctagagaattagctcaatactatgaaagaaagtaaagaaa-aat-----aggcatttaattgctttaatttaatgcttgattatgtgaagaaacgttctcttctggtttaccaaatagttgatgaaattaagtttattttt
i chlSab2.chr29             C 0 I 310
s colAng1.NW_012117110v1        89842 437 -   1784207 ggagtgaatttctgggtcacatggtga--ttctttgtttaaccttgagtaactgccaaattgttttccaaagcagttgcaacatttcacattagcaatgtataagagtttcattttttctacatcctgatcaacaattgttactgcctttttgcta--taggtatcctacc-aggtgtaaagaggtaGGATctgttcaaagattggacaatctaaacaaaaaagggtaactgccatggatcaagacacaccaaacacattaaatctatgagttcacaatgatactaaaaaacaacttactggtcagctctggagaatgctagagaattagctcaatattatgaaagaaagtaaagaaa-aat-----aggcatttaattg-----------tgcttgattatgtgaagaaatgttctcttccggtttaccaaatagttgatgaaattaagtttattttt
i colAng1.NW_012117110v1    C 0 I 310
s calJac3.chr6               22293381 439 + 158406734 ggagtgaatttctgggtcacatggtga----ttttgtttaaccttgagtaactgccaaattgtcttccaaagcagctgcaacatttctcattagcaatatatgagagtttcactttttctacctcctgatcaacaattgttactgcctttttgcta--caggcatcctacc-aggtgtaaagaggCTCCa-ctgttcaaagattacacaatctaaacaaaaaagggtaactgcaatggatcaagacacatcaaacacattaaatccatgagttcacaatgatactaaaaaacaacttactggtcaactttggagaatgctagagaatcagctcaatattacgaaggaaagtaaagaaa-aataatcaaagcatttaattg-----------tgcttaattatctgaagaaacgttctcttctggtttatcaaatagttgattaaattaagtttattttt
i calJac3.chr6              C 0 I 1
s saiBol1.JH378108           50523129 441 +  54856640 ggagtaaatttctgggtcacatggtga-tttttttatttaaccttcagtaactgccaaattgttttccaaagcagctgcaacatttctcattagcaatatatgagagtttcactttttctacatcctaatcaacaattgttactgccttcttgcta--caggtatcctacc-aggtgtaaagaggctcca-ctgttcaaagattagacaatctaaacaaaaaagggtaactgcaatggatcaagactcatcaaacacattaaatccatgagttcacaatgatactaaaaaacaacttagtggtcaactttggagaatgccagagaatcagctcaatattatgaaggaaagtaaagaaa-aataatc-aagcatttaattg-----------tgcttgattatttgaagaaatattctcttctagtttatcaaatagttgatgaaattaagtttattttt
i saiBol1.JH378108          C 0 I 1
s cebCap1.NW_016107610v1       666380 438 -   2910086 ggagtgaatttctgggtcacatggtga-tttttttgtttaaccttgagtaactgccaaattgttttcccaagtagaggcaacatttctcattagcaatatatgacagtttcactttttctacatcctgatcaacaattgttactgcctttttgcta--caggcatcctacc-aggtgtaaagaggctcca-ccgttcaaagattagacaatctaaacaaaaaagggtaactgca--ggatcaagacacatcaaacacattaaatccatgagttcgcaatgatactaaaaaacaacttactggtcaactttggagactgctagagaatcagctcaatattatgaaggaaagtaaagaaa-aataac--aagcatttaattg-----------tgcttgattatttgaagaaatgttctcttctggtttatcaaatagctgatgaaattaagtttattttt
i cebCap1.NW_016107610v1    C 0 I 1
s aotNan1.NW_018505940v1     40691909 441 +  42888418 ggattgaatttctgggtcatgtggtgattttttttgtttaaccttgagtaactgccaaattgttttccaaagcagctgcaacatttctcattagcaatatatgagagtttcactttttctacatcctgatcaaaaattgttactgcctttttgcta--caggcatcctacc-aggtgtaaagaggctcca-ctgttcaaagattagacaatctaaacaaaaaagggtaactgcaatggatcaagacacatcaaacatattaaatccatgagttcacaatgatactaaaaaacaacttactggtcaactttggagaatgctagagaatcagctcaatattat-aaggaaagtaaagaaa-aataatc-aagcatttaattg-----------tgcttgattatttgaagaaacattctcttctgatttatcaaatagttgatgaaattaagtttattttt
i aotNan1.NW_018505940v1    C 0 I 1
s mm10.chr7                  81403086 397 + 145441459 gaagtcaattttcaggtcacatggtaa--ctcacacatgaccttttgacaactctgacactgttttccaaagcagatgaaacactctccataaagaatacatgagaatcccacttcttccacatTTTGATGGA--------------TTTTTAAAAATTAGTCATTCTACTGAAATATGAAGAAAATCAA-CTGTTTAAGGATAGTATCATGTAAACAAAAGCAGGtaattgccatggat----------ccaacacattaaatccatgagaccatgatgatattagaaa--aacttactggttaactttggaga-------------aactcagtattacataacaaaataaacaaataatc----aatcatttaattttct--------tccctaggtttttttttaatctttttttctaagttaaccaagca----atga----aagcttcttttt
i mm10.chr7                 I 2019 C 0
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e rheMac8.chr7               60931899 3725 + 169600520 I

a score=20238.000000
s hg38.chr15_KI270850v1_alt    384859 8 +    430880 taaaaagc
s panTro5.chr15              63537936 8 +  83230942 taaaaagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80494869 8 +  99763055 taaaaagc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        95146 8 -   1709092 taaaaagc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17254875 8 - 121039945 taaaaagc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108461722 8 - 171882078 aaacaagc
i macFas5.chr7              C 0 I 303
s calJac3.chr6               22293821 8 + 158406734 ataaaaga
i calJac3.chr6              I 1 C 0
s saiBol1.JH378108           50523571 8 +  54856640 ataaaagc
i saiBol1.JH378108          I 1 C 0
s cebCap1.NW_016107610v1       666819 8 -   2910086 ataaaagc
i cebCap1.NW_016107610v1    I 1 C 0
s aotNan1.NW_018505940v1     40692351 8 +  42888418 ataaaagc
i aotNan1.NW_018505940v1    I 1 C 0
s mm10.chr7                  81403483 8 + 145441459 acaaaatt
i mm10.chr7                 C 0 C 0
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e colAng1.NW_012117110v1        90279 310 -   1784207 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e chlSab2.chr29              21151664 310 -  24206276 I
e cerAty1.NW_012002657v1        70657 312 -   1987038 I
e macNem1.NW_012011945v1        75126 312 -   2311642 I
e rheMac8.chr7               60931899 3725 + 169600520 I

a score=2997.000000
s hg38.chr15_KI270850v1_alt    384867 1 +    430880 a
s panTro5.chr15              63537944 1 +  83230942 a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80494877 1 +  99763055 a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        95154 1 -   1709092 a
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17254883 1 - 121039945 g
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22293829 1 + 158406734 a
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50523579 1 +  54856640 a
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       666827 1 -   2910086 a
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40692359 1 +  42888418 a
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81403491 1 + 145441459 a
i mm10.chr7                 C 0 C 0
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             678678 7042 -  36342412 I
e colAng1.NW_012117110v1        90279 310 -   1784207 I
e manLeu1.NW_012106908v1        76493 12243 -   1397330 I
e chlSab2.chr29              21151664 310 -  24206276 I
e cerAty1.NW_012002657v1        70657 312 -   1987038 I
e macNem1.NW_012011945v1        75126 312 -   2311642 I
e macFas5.chr7              108461730 303 - 171882078 I
e rheMac8.chr7               60931899 3725 + 169600520 I

a score=685493.000000
s hg38.chr15_KI270850v1_alt    384868 74 +    430880 tatcaactaataaacgaaaaac--agagaattagaaaactgctatttggcaacctctaatgta----tcta---------------------------ggtagtgac
s panTro5.chr15              63537945 74 +  83230942 tatcaactaataaacgaaaaac--agagaattagaaaactgctatttggcaacccctaatgta----tcta---------------------------ggtagtgac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80494878 74 +  99763055 tatcaactaataaacgaaaaac--agagaattagaaaactgctatttggcaacccctaatgta----tcta---------------------------ggtagtgac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        95155 74 -   1709092 tatcaactaataaacgaaaaac--agagaattagaaaactgctatttggcaacccttaatgta----tcta---------------------------ggtagtgac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17254884 74 - 121039945 tatcaactaataaatgaagaac--aaagaatttgaaaactgctatttggcaacccctaatgta----tcta---------------------------ggtagtgac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60935624 74 + 169600520 tatctactaataaatgaaaaac--agagatttagaaaactgctatttggcaacccctaatgta----tcta---------------------------ggaagtgac
i rheMac8.chr7              I 3725 C 0
s macFas5.chr7              108462033 74 - 171882078 tatctactaataaatgaaaaac--agagatttagaaaactgctatttggcaacccctaatgta----tcta---------------------------ggaagtgac
i macFas5.chr7              I 303 C 0
s macNem1.NW_012011945v1        75438 74 -   2311642 tatctactaataaatgaaaaac--agagatttagaaaactgctatttggcaacccctaatgta----tcta---------------------------ggaagtgac
i macNem1.NW_012011945v1    I 312 C 0
s cerAty1.NW_012002657v1        70969 74 -   1987038 tatctactaataaatgaaaaac--agagatttagaaaactgctatttggcaacccctaatgta----tcta---------------------------ggaagtgac
i cerAty1.NW_012002657v1    I 312 C 0
s chlSab2.chr29              21151974 74 -  24206276 tatctactaataaatgaaaaac--agagatttagaaaactgctatttggcaacccctaatgta----tcta---------------------------ggaagtgac
i chlSab2.chr29             I 310 C 0
s manLeu1.NW_012106908v1        88736 74 -   1397330 tatctactaataaatgaaaaac--agagatttagaaaactgctatttggcaacccctaatgta----tcta---------------------------ggaagtgac
i manLeu1.NW_012106908v1    I 12243 C 0
s colAng1.NW_012117110v1        90589 74 -   1784207 tatctactaataaatcaaaaac--agagatttagaaaactgctatttggcaacccgtaatgta----tcta---------------------------ggaagtgac
i colAng1.NW_012117110v1    I 310 C 0
s calJac3.chr6               22293830 80 + 158406734 tatcaactaataaatgaaaaactgagagaattaggaaactgcaatttggcaacccctaacgtaagtgtcta---------------------------ggtactgac
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50523580 80 +  54856640 tatcaactaataaactaaaaactgagagaattagaaaactgcaatttggcaaccccttatgtatgtatcta---------------------------ggtagtgac
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       666828 76 -   2910086 tat----taataaatgaaaaactgagagaattagaaaactgcaattttgcaacccctaatgtatgtatcta---------------------------ggtagtgac
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40692360 78 +  42888418 tgtca--taatacatgaaaaactgagagaattaggaaactgcaatttggcaacccctaatgtatgtatcta---------------------------ggtagtgac
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81403492 96 + 145441459 catcagttaataaatgaagtat---gagagatacaaAATTGATGT----CAATCTCTAATATA----TTAATGCTGGCAAAGGTGCTAAAATATgggtggtagtggc
i mm10.chr7                 C 0 I 154
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             678678 7042 -  36342412 I

a score=520548.000000
s hg38.chr15_KI270850v1_alt    384942 65 +    430880 catcaatgcctgatgatatcactagaaaagaagtactcagtatcacctactaagtattcttgcta
s panTro5.chr15              63538019 65 +  83230942 catcaatgcctgatgatatcactagaaaagaagtactcagtatcacctactaagtattcttgcta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80494952 65 +  99763055 catcaatgcctgatgatatcactagaaaagaagtactcagtatcacctactaagtattcttgcta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        95229 65 -   1709092 catcaatgcctgatgatatcactagaaaagaagtactcagtatcacctactaagtattcttgcta
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17254958 64 - 121039945 cgtcaatgcctgatgatatcactagaaac-aagtactcagcatcacctactaagtattcttgcta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60935698 64 + 169600520 catcaatgtctgatgatattactagacag-aagtactcaggatcacctactaagtattcttgcca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108462107 64 - 171882078 catcaatgtctgatgatattactagacag-aagtactcaggatcacctactaagtattcttgcca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        75512 64 -   2311642 catcaatgtctgatgatattactagacag-aagtactcaggatcacctactaagtattcttgcca
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        71043 64 -   1987038 catcaatgtctgatgatatcactagacag-aagtactcaggatcacctactaagtattcttgcca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21152048 63 -  24206276 caccaatgtctgatgatatcactagaaag-aagtattcaggatcacc-aataagtattcttgcca
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        88810 64 -   1397330 catcaatgtctgacgatatcactagacag-aagtactcaggatcacctactaagtattcttgcca
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        90663 64 -   1784207 catcaatgtctgatgatatcactagaaag-aagtactcagtatcacctactaagtattcttgcca
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22293910 56 + 158406734 caccta--------gatttcactagacag-aagttctcaatatcacctgctaagtattcttgcta
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50523660 56 +  54856640 caccta--------gatttcactagacag-aagtactcaatatcacctgctaagtattcttgcta
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       666904 56 -   2910086 caccTA--------GATTTCACTAgacag-aagtactcaatatcacctgctaagtattcttgcta
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40692438 56 +  42888418 caccta--------gatttcactagacag-aagtactcaatatcacctgctaagtattcttgcta
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81403588 154 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             678678 7042 -  36342412 I

a score=2263449.000000
s hg38.chr15_KI270850v1_alt    385007 222 +    430880 agaaagtcaaacctaagtctgctcaagtctctagctataatc----accaattaacagaaactagagggggccgagggacatgtgaagtactgccatgggaatgcagtcagtaaaatctgtactgcagataattccatagaac-acatgacctacttttctcaaaaaat---ttatagcagagggcagatgaagaaagcaatcctagcctaaaagcaacttgagacataa
s panTro5.chr15              63538084 222 +  83230942 agaaagtcaaacctaagtctgctcaagtctctagctataatc----accaattaacagaaactacagggggccgagggacatgtgaagtactgccatgggaatgcagtcagtaaaatctgtactgcagataattccatagaac-acatgacctacttttctcaaaaaat---ttatagcagagggcagatgaagaaagcaatcctagcctaaaagcaacttgagacataa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80495017 222 +  99763055 agaaagtcaaacctaagtctgctcaagtctctagctataatc----accaattaacagaaactacagggggccgagggacatgtgaagtactgccatgggaatgcagtcagtaaaatctgtactgcagataattccatagaac-acatgacctacttttctcaaaaaat---ttatagcagagggcagatgaagaaagcaatcctagcctaaaagcaacttgagacataa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        95294 222 -   1709092 agaaagtcaaacctaagtctgctcaagtctctagctataatc----accaattaacagaaactacagggggccgagggacatgtgaagtactgccatgggaatgcagtcagtaaaatctgtactgcagataattccatagaac-acatgacctacttttctcaaaaaat---ttatagcagagggcagatgaagaaagcaatcctagcctaaaagcaacttgagacataa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17255022 222 - 121039945 aggaagtcaaacctaagtctgctcaagtctctagctataatc----accaattaacagaaactacagggggccgagggacatgtgaagtactgccatgggaatgcagtcagtaaaatctgtactgcagataattccatagaac-acatgacctacttttctaaaaaaat---ttatagcagggggcagatgaagaaagcaaccctagactaaaagcaacttgagacataa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60935762 221 + 169600520 agaaagtcaaacctaagtctgctcaagtctctagctataatc----accaattaacagaaactacagggggccaagggacatgtgaagtactgccacgggaatgcagtcagtaaaatctgtactgcagataatttcatagaac-acatgacctacttttctcaaaaaat---ttacagc-ggaggcagatggagaaagcaactctatactaaaagcaacttgagacataa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108462171 221 - 171882078 agaaagtcaaatctaagtctgctcaagtctctagctataatc----accaattaacagaaactacagggggccaagggacatgtgaagtactgccacgggaatgcagtcagtaaaatctgtactgcagataatttcatagaac-acatgacctacttttctcaaaaaat---ttacagc-ggaggcagatggagaaagcaactctagactaaaagcaacttgagacataa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        75576 221 -   2311642 agaaagtcaaacctaagtctgctcaagtctctagctataatc----accaattaacagaaactacagggggccaagggacatgtgaagtactgccacggtaatgcagtcagtaaaatctgtactgcagataatttcatagaac-acatgacctacttttctcaaaaaat---ttacagc-ggaggcagatggagaaagcaactctagactaaaagcaacttgagacacaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        71107 221 -   1987038 agaaagtcaaacctaagtctgctcaagtctctagctataatc----accaattaacagaaactacagggggccaagggacatgtgaagtactgccacgggaatgcagtcagtaaaatctgtactgcagataatttcatagaac-acatgacctacttttctcaaaaaat---ttacagc-gggggcagatggagaaagcaactctagactaaaagcaacttgagacataa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21152111 221 -  24206276 agaaagtcaaacctaagtctgctcaagtctctagctataatc----accaattaacagaaactacagggggccaagggacatgtgaagtactgccacgggaatgcagtcagtaaaatctgtactgcagataatttcatagaac-acatgacctacttttctcaaaaaat---ttacagc-gggggcagagggagaaagcaactctagactaaaagcaacttgagacataa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        88874 221 -   1397330 agaaagtcaaacctaagtctgctcaagtctctagctataatc----accaattaacagaaactacagggggccaagggacatgtgaagtactgccacgggaatgcagtcagtaaaatctgtactgcagataatttcatagaac-acatgacctacttttctcaaaaaat---ttacagc-gggggcagatggagaaagcaactctagactaaaagcaacttgagacataa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        90727 222 -   1784207 agaaagtcaaacctaagtctgcttaagtctctagctataatc----accaattaacagaaactacagggggccaagggacatgtgaagtactgccatgggaatgcagtcagtaaaatctgtactgcagataattccatagaac-acatgacctacttttctcaaaaaat---ttatagcagggggcagatggagaaagcaactctagactaaaagcaacttgagacataa
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22293966 229 + 158406734 agaaagtcaaacctaagtctgctcaagtctctagctataatcatcaaccaattaatagaaaatacagggggtcgagggatatgttaagtactgccatgagaatgcagtcagtaaaatctatattgcagataattccagagaac-acatgacctacttttctcaaaaaataaattacagcaggaagcagatggagaaagcaactccagactaaaagcaatgtgagacataa
i calJac3.chr6              C 0 I 4
s saiBol1.JH378108           50523716 229 +  54856640 agaaagtcaaacctaagtctgctgaagtctctagctataatcaccaaccaattaatagaaaacacaggtggccgagagatatgttaaggactgccatgagaatgcagtcagtaaaatctatactgcagataattccagagaac-acatgacctacttttctcaaaaaataaattacagcaggaggcagatggagaaagtaactccagactaaaagcaatgtgagacataa
i saiBol1.JH378108          C 0 I 4
s cebCap1.NW_016107610v1       666960 229 -   2910086 agaaagtcaaacctaagtctgctcaagtctctagctataattaccaaccaattaatagaaaatacagggggctgagggatatgttaaggactgccatgagaatgcagtcagtaaaatctatactgcagataattccagagaac-acatgacttacttttctcaaaaaataaattacagcaggaggcagatggagaaagcaactccagactaaaagcaacgtgagacataa
i cebCap1.NW_016107610v1    C 0 I 19
s aotNan1.NW_018505940v1     40692494 229 +  42888418 agaaagtcaaacctaagtctgctcaagtctctagctataatcaccaaccaattaatagaaaatacagggggccaagggatatgttaaggactgccatgggaatgcagtcactaaaatctataccgcagataattccagagaac-acatgacctacttttctcaaaaaataaattacagcaggaggcagatggagaaagcaactccagactaaaagcaacatgagacataa
i aotNan1.NW_018505940v1    C 0 I 4
s mm10.chr7                  81403742 172 + 145441459 ACAAAACCAAACCAAAGTCT--------------CTATTTTA----ATCAGTTAATTAAAAATATTGGGGGGCA---------TTAAGTATTGA--------------TAGTTAGAAGTATACAACAGATAATTTTACAAAATAATATGGAT--------TTAACAAAT-----AAAGATAAAAAGAAATAGAGGAAACAAATGGAGACTAAAAGCAACTAGAAAT----
i mm10.chr7                 I 154 C 0
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             678678 7042 -  36342412 I

a score=216037.000000
s hg38.chr15_KI270850v1_alt    385229 23 +    430880 tcacaatcCTAACAATCACAGAA-
s panTro5.chr15              63538306 23 +  83230942 tcacaatcCTAACAATCACAGAA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80495239 23 +  99763055 tcacaatcCTAACAATCACAGAA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        95516 23 -   1709092 tcacaatcCTAACAATCACAGAA-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17255244 23 - 121039945 tcacaatcCTAACAATCACAGAA-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60935983 23 + 169600520 tcacaatcCTAACAATCACAGAA-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108462392 23 - 171882078 tcacaatcCTAACAATCACAGAA-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        75797 23 -   2311642 tcacaatcCTAACAATCACAGAA-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        71328 23 -   1987038 tcacaatcCTAACAATCACAGAA-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21152332 23 -  24206276 tcacaatcCTAACAATCACAGAA-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        89095 23 -   1397330 tcacaatcCTAACAATCACAGAA-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        90949 23 -   1784207 tcacaatcCTAACAATCACAGAA-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22294199 23 + 158406734 tcacaatgCTAACAATCACAGAA-
i calJac3.chr6              I 4 C 0
s saiBol1.JH378108           50523949 23 +  54856640 tcacaaCCCTAACAATCACAGAA-
i saiBol1.JH378108          I 4 C 0
s aotNan1.NW_018505940v1     40692727 23 +  42888418 tcgcaaCCCTAACGATCACAGAA-
i aotNan1.NW_018505940v1    I 4 C 0
s mm10.chr7                  81403914 18 + 145441459 ------TTCTAACAATCTTGAGTA
i mm10.chr7                 C 0 C 0
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e cebCap1.NW_016107610v1       667189 19 -   2910086 I
e otoGar3.GL873530             678678 7042 -  36342412 I

a score=1018296.000000
s hg38.chr15_KI270850v1_alt    385252 103 +    430880 ----TCACAATGCTATTCCTAAAGGATTC-AAAACACAATTAGGTCTAATTTTTACTAAAGCTCACGAAAAATAAAGCAGTTAAGACAAGC----ATGTGGTGAAACTTGAA
s panTro5.chr15              63538329 103 +  83230942 ----TCACAATGCTATTCCTAAAGGATTC-AAAACACAATTAGGTCTAATTTTTACTAAAGCTCACGAAAAATAAAGCAGTTAAGACAAGC----ATGTGGTGAAACTTGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80495262 103 +  99763055 ----TCACAATGCTATTCCTAAAGGATTC-AAAACACAATTAGGTCTAATTTTTACTAAAGCTCACGAAAAATAAAGCAGTTAAGACAAGC----ATGTGGTGAAACTTGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        95539 103 -   1709092 ----TCACAATGCTATTCCTAAAGGATTC-AAAAAACAATTAGGTCTAATTTTTACTAAAGCTCACGAAAAATAAAGCAGTTAAGACAAGC----ATGTGGTGAAACTTGGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17255267 103 - 121039945 ----TCACAATCCTATTCCTGAAGGATTC-AAAAAACAATTAGGTCTAATTTTTACTAAAGCTCACGAAAAATAAAGCAGTTAAGACAAGC----ATGTGGTGAAACTTGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60936006 103 + 169600520 ----TCACAATCCTATTCCTGAAGGATTC-AAAAAACCATTAGGCCTAATTTTTACTAAAGCTCACGAAATATATAGCAGTTAAGACAAGC----GTGTGGTGAAACTTGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108462415 103 - 171882078 ----TCACAATCCTATTCCTGAAGGATTC-AAAAAACAATTAGGCCTAATTTTTACTAAAGCTCACGAAATATATAGCAGTTAAGACAAGC----GTGTGGTGAAACTTGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        75820 103 -   2311642 ----TCACAATCCTATTCCTGAAGGATTC-AAAAAACAATTAGGCCTAATTTTTACTAAAGCTCACGAAATATATAGCAGTTAAGACAAGC----GTGTGGTGAAACTTGGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        71351 103 -   1987038 ----TTACAATCCTATTCCTGAAGGATTC-AAAAAAAAATTAGGCCTAATTTTTACTAAAGCTCACGAAATATATAGCAGTTAAGACAAGC----GTGTGATGAAACTTGGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21152355 104 -  24206276 ----TCACAATCCTATTCCTGAAGGATTCAAAAAAACAATTAGGCCTAATTTTTACTAAAGCTCACGAAAAATATAGCAGTTAAGACAAGC----GTGTGGTGAAACTTGGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        89118 103 -   1397330 ----TTACAATCCTATTCCTGAAGGATTC-AAAAAACAATTAGGCCTAATTTTTACTAAAGCTCACGAAATATATAGCAGTTAAGACAAGC----GTGTGGTGAAACTTGGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        90972 102 -   1784207 ----TCACAAT-CTATTCCTGAAGGATTC-AAAAAACAATTAGGCCTAATTTTTACTAAAGCTCACGAAAAATATAGCAGTTAAGACAAGC----GTGTGGTGAAACTTGCA
i colAng1.NW_012117110v1    C 0 I 314
s calJac3.chr6               22294222 107 + 158406734 ----TCACAATCCTATTCCTGAAAGATTC-AAAAAACAGTTAGGCCTAATTTTCACTAAAGCTCACAAAAAACACAGCAGTTAATACAAGCAAGTGTGTGGTGAAACTTGGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50523972 107 +  54856640 ----TCACAATCCTATTCCTGAAAGATTC-AAAAAACTATTAGGCCTAATTTTCACTAAAGCTCACAAAAAATATAGCAGTTAATACAAGCAAGTGTGTGGTGAAACTTGGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       667208 107 -   2910086 ----TCATAATCCTATTCCTGAAAGATTC-AAAAAACAATTAGGCCTAATTTTCACTAAAGCTCACAAAAAATATAGCAGTTAATACAAGCCAGTGTGTGGTGAAACTTGGA
i cebCap1.NW_016107610v1    I 19 C 0
s aotNan1.NW_018505940v1     40692750 107 +  42888418 ----TCACAATCCTATTCCTGAAAGATTC-AAAAAACAGTTAGGCCTAATTTTCACTAAAGCTCACAAAAAATACAGCAGTTAATACAAGCAAGTGTGTGGTGAAACTTGGA
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81403932  92 + 145441459 TGTTTATCTACCATAT-----AAGAATTC-AAAACA-AGTGGGGGCTTATC----------CCCACAAGAAAT---TCAGTCAATACTAGCAAGAATGTAACAAAACTTAGG
i mm10.chr7                 C 0 C 0
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             678678 7042 -  36342412 I

a score=452782.000000
s hg38.chr15_KI270850v1_alt    385355 45 +    430880 CTGATTTATTCTCTTGATGGCATAATATTCTGACCGAATTCACTT
s panTro5.chr15              63538432 45 +  83230942 CTGATTTATTCTCTTGATGGCATAATATTCTGACCGAATTCATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80495365 45 +  99763055 CTGATTTATTCTCTTGATGGCATAATATTCTGACCGAATTCATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        95642 45 -   1709092 CTGATTTATTCTCTTGATGGCATAATATTCTGACCGAATTCACTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17255370 45 - 121039945 CTGATTTATTCTCTTGATGGCATAATATTCTGACCGAATTCACTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60936109 45 + 169600520 CTGGTTTATACTCTTGATGGCATAATAGTCTGACTGAATTCACTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108462518 45 - 171882078 CTGGTTTATACTCTTGATGGCATAATAGTCTGACTGAATTCACTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        75923 45 -   2311642 CTGGTTTATACTCTTGATGGCATAATAGTCTGACTGAATTCACTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        71454 45 -   1987038 CTGGTTTATACTCTTGATGGCATAATAGTCTGACTGAATTCACTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21152459 45 -  24206276 CTGGTTTATACTCTTGATGGCATAATAGTCTGACCGAATTCACTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        89221 45 -   1397330 CTGGTTTATACTCTTGATGGCATAATAGTCTGACTGAATTCACTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        91388 45 -   1784207 cTGGTTTATACTCTTGATGGCATAATATTCTGACCAAATTCACTT
i colAng1.NW_012117110v1    I 314 C 0
s calJac3.chr6               22294329 45 + 158406734 GTGATTAATGCTCTTGATGGCATAACCATCTGACCAAATTCACTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50524079 45 +  54856640 CTGATTCATACTCTTGATGGCATAACATTCTGACTGAATTCACTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       667315 45 -   2910086 CTCATTCATACTCTTAACGGCATAACATTCTGACTGAATTCACGT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40692857 45 +  42888418 CTGATTCGTACTCTTGATGGCATAACATTCTGACCGAATTCACTT
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81404024 45 + 145441459 TTCATTTATACTTCCAACACCACAATATTCTAATTCAATTCATCT
i mm10.chr7                 C 0 C 0
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             678678 7042 -  36342412 I

a score=212907.000000
s hg38.chr15_KI270850v1_alt    385400 20 +    430880 GCAAATAAA-CTTCTGACATG
s panTro5.chr15              63538477 20 +  83230942 GCAAATAAA-CTTCTGACATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80495410 20 +  99763055 GCAAATAAA-CTTCTGACATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        95687 20 -   1709092 GCAAATAAA-CTTCTGACATG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17255415 20 - 121039945 GCAAATAAA-CTTCTGACATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60936154 20 + 169600520 GCAAATAAA-CTTTTGACGCG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108462563 20 - 171882078 GCAAATAAA-CTTTTGACGCG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        75968 20 -   2311642 GCAAATAAA-CTTTTGACGCG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        71499 20 -   1987038 GCAAATAAA-CTTTTGACGCG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21152504 20 -  24206276 GCAAATAAA-CTTTTGACGCG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        89266 20 -   1397330 GCAAATAAA-CTTTTGACACG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        91433 20 -   1784207 GCAAATAAA-CTTTTGACGTG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22294374 20 + 158406734 GCAAATAAA-CTTTTTACACG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50524124 20 +  54856640 GCAAATAAA-CTTTTTACATG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       667360 20 -   2910086 GCAAATAAA-CTTTTTACATG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40692902 20 +  42888418 GCAAATAAA-CTTTTGACAGG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             685720 18 -  36342412 GCAAACACA-CTTTTAA--TG
i otoGar3.GL873530          I 7042 C 0
s mm10.chr7                  81404069 20 + 145441459 -CAATTAAACCTTCTGAGGTG
i mm10.chr7                 C 0 I 30523
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I

a score=3503780.000000
s hg38.chr15_KI270850v1_alt    385420 370 +    430880 AGAAGATTTAACTTGCAAATGCAAGTATTAATAAGCTTTCCATCTGAG---AAAAAAAAGCCCAATTTGGAAAACATATGTACTAAAAA-GTTCATTAAAATGTTCATTACAggaca-ggcgctgcagctcacacatgtaatcccagcactttgggagactgaggcaggcagatcacttgaggccaggag-ttgaaact-----ccaacatggcaaaaccccgtctctact-aaaatac-aaaaaattagctgggcatggtggctcacacctgtaatcccagctactcgggaggctgaggcatgagaatcacttgaaccccggaggcagaggttacagtgagcagagattatgccactgcactccaacctgggcaacagaggg
s panTro5.chr15              63538497 370 +  83230942 AGAAGATTTAACCTGCAAATGCAAGTATTAATAAGCTTTCCATCTGAG---AAAAAAAAGCCCAATTTGGAAAACATATGTACTAAAAA-GTTCATTAAAATGTTCATTACAggaca-ggcgctgcagctcatacatgtaatcccagcactttgggagactgaggcaggcagatcacttgaggccaggag-ttgaaact-----ccaacatggcaaaaccccgtctctact-aaaatac-aaaaaattagctgggcatggtggcgcacacctgtaatcccagctactcgggaggctgaggcatgagaatcacttgaaccccggaggcagaggttacagtgagcagagattatgccactgcactccaacctgggcaacagaggg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80495430 370 +  99763055 AGAAGATTTAACCTGCAAATGCAAGTATTAATAAGCTTTCCATCTGAG---AAAAAAAAGCCCAATTTGGAAAACATATGTACTAAAAA-GTTCATTAAAATGTTCATTACAggaca-ggcgctgcagctcatacatgtaatcccagcactttgggagactgaggcaggcagatcacttgaggccaggag-ttgaaact-----ccaacatggcaaaaccccgtctctact-aaaatac-aaaaaattagctgggcatggtggcgcacacctgtaatcccagctactcgggaggctgaggcatgagaatcacttgaaccccggaggcagaggttacagtgagcagagattatgccactgcactccaacctgggcaacagaggg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        95707 369 -   1709092 AGAAGATTTAACTTGCAAATTCAAGTATTAATAAGCTTTCCATCTGAG----AAAAAAAGCCCAATTTGGAAAACATATGTACTAAAAA-GTTCATTAAAATGTTCATTACAggaca-ggcactgcagctcatacatgtaatcccagcactttgggagactgaggcaggcagatcacttgaggccaggag-ttgaaact-----ccaacatggcaaaaccccgtctctatt-aaaatac-aaaaaattagctgggcatggtggcgcacacctgtaatcccagctactcgggaggctgaggcatgagaatcacttgaacccaggaggcagaggttacagtgagcagagattatgccactgcactccaacctgggcaacagaggg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17255435 377 - 121039945 AGAAGATTTAACTTGCAAATCCAAGTATTAATAAGCTTTTCATCTGAG---AAAAAAAAGCCAAATTTGGAAAACATATGTACTAAAAA-GTTCATTAAAATGTTCATTACAggcca-ggcgctgcagctcatacatgtaatcccagcactttgggagactgaggcaggcagatcacttgaggccaggag-tttcaactcctggccaacatgacaaaaccccgtctctactaaaaatacaaaaaaattagctgggcatggtggtgcacacctgtaatcccagctactcgggaggctgaggcatgagaatcacttgaacccaggaggcagagtttacagtgagctgagattgtgccactgcactccaacctgggcaacagaggg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60936174 377 + 169600520 AGAAGATTTAATTTGCAAATGCAAGTATTAATAAGCTTTTAATCTGAG--AAAAAAAAAGCCAAATTTGGAAAAGATATGTACTAAAAA-ATTCATGAAAATGTTCATTACAggcca-ggtgctgcagctcatacctgtaatcccagcactttgggagactgaggtgggcagatcacttgaggccaggag-tttcaactcctggccaacatggcaaaaccccgtctccactaaaaacac-aaaaaattagctgggcatagtggtgcacacctgtaatcctagctactcgggaagctgaggcatgagaatcacttgaacccaggaggcagaggttacagtgagtcgagattgtgccactgcactccaacctgggcaacggaggg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108462583 376 - 171882078 AGAAGATTTAATTTGCAAATGCAAGTATTAATAAGCTTTTAATCTGAG---AAAAAAAAGCCAAATTTGGAAAAGATATGTACTAAAAA-ATTCATGAAAATGTTCATTACAggcca-ggtgctgcagctcatacctgtaatcccagcactttgggagactgaggtgggcagatcacttgaggccaggag-tttcaactcctggccaacatggcaaaaccccgtctctactaaaaacac-aaaaaattagctgggcatagtggtgcacacctgtaatcctagctactcgggaagctgaggcatgagaatcacttgaacccaggaggcagaggttacagtgagccgagattgtgccactgcactccaacctgggcaacggaggg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        75988 290 -   2311642 AGAAGATTTAATTTGCAAATGCAAGTATTAATAAGCTTTTAATCTGAG---AAAAAAAAGCCAAATTTGGAAAAGATATGTACTAAAAA-ATTCATGAAAATGTTCATTACAggcca-ggtgctgcagcttatacctgtaatcccagcactttgggagactgaggtgggcagatcacttgaggccaggag-tttcaactcctggccaacatggcaaaaccccgtctctattaaaaacac-aaaaaattagctgggcatagtggtgcacacctgtaatcctagctactcgggaagctg--------------------------------------------------------------------------------------
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        71519 378 -   1987038 AGAAGATTTAACTTGCAAATGCAAGTATTAATAAGCTTTTAATCTGAG-AAAAAAAAAAGCCAAATTTGGAAAAGATATGTACTAAAAA-ATTCATGAAAATGTTCATTACAggcca-ggtgctgcagctcatacctgtaatcccagcactttgggagactgaggtgggcagatcacttgaggccaggag-tttcaactcctggccaacatggcaaaaccctgtctctactaaaaacat-aaaaaattagctgggcatactggtgcacacctgtaatcctagctactcgggaagctgaggcatgagaatcacttgaacccaggaggtagaggttacagtgagccgagattatgccactgcactccaacctgggcaacggaggg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21152524 373 -  24206276 AGAAGATTTAACTTGCAAATGCAAGTATTAATAAGCTTTTAATCTGAGAAAAAAAAAAAGCCAAATTTGGAAAACATATGTACTAAAAA-------GAAAATGTTCATTACAggcca-ggtgctgcagctcatacctgtaatcccagcactttgggagactgaggtgggcagatcacttgaggccaggag-tttcaactcctggccaacatggcaaaaccccgtctctactaaaaatac-caaaaattagctgggcatagtggtgcacacctgtaatcctagctactcgggaagctgaggcatgagaatcacttgaacccaggaggcagaggttacagtgagccgagattgtgccactgcactccaacctgggcaacggaggg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        89286 379 -   1397330 AGAAGATTTAACTTGCAAATGCAAGTATTAATAAGCTTTTAATCTGAGAAAAAAAAAAAGCCAAATTTGGAAAAGATATGTACTAAAAA-ATTCATGAAAATGTTCATTACCggcca-ggtgctgcagctcatacctgtaatcccagcactttgggagactgaggtgggcagatcacttgaggccaggag-tttcaactcctggccaacatggcaaaaccctgtctctactaaaaacat-aaaaaattagctggacatactggtgcacacctgtaatcctagctactcgggaagctgaggcatgagaatcacttgaacccaggaggcagaggttacagtgagccgagattatgccactgcactccaacctgggcaacggaggg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1        91453 377 -   1784207 AGAAGATTTAACTTGCAAATGCAAGTATTAATAAGCTTTTAATCTGAG--AAAAAATGCGCCAAATTTGGAAGACATATGTACTAAAAA-ATTCATGAAAATGTTCACTACAggcca-ggcgctgcagctcatacctgtaatcccagcactttgggagactgaggtgggcagatcacttgaggccaggag-tttcaactcctggccaacatggcgaaactccgtctctactaaaaatac-aaaaaattagctaggtatggtggtgcacacctgtaatcccagctactcggaaagctgaggcatgagaatcacttgaacccaggaggcagaggttacggtgagccgagattgtgccactgcactccaacctgggcaacggaggg
i colAng1.NW_012117110v1    C 0 I 8321
s calJac3.chr6               22294394 357 + 158406734 AGAGGATTTAACTTGCAAATAAAAGTAT---TAAGCTTTTAATCTGA----GAAAAAAAGCAAAATATGGAAAACATATGTATTAAAAA-GTTCATTTAAATATTCATTACAggcca-ggctctgcatctcatatttgtaatcctagcactttgggagaccgaggcaggcagattgcttgaggccaggac-ttggaacgcctggtcaacatgacgaaaccccatctctactaagaatac--aaaaaatagctgggcacggtggcacactcc--------------accatgaagccaaggcatgaaaatcacttgaaccaaggaggcagaggttacagtgagccgagattgtgccactgcaccccgacctgggcgacagaggg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50524144 359 +  54856640 AGAGGATTTAACTTGCAAATAAAAGTATTAATAAGCTTTTAATCTGAG---GAAAAAAAACAAAATATAGAAAACATATGTACTAAAAA-GTTCATTTAAATGTTCATAACAggcca-ggcactgcatctcacacttgtaatcctagcactttgggagaccgaggcaggtagattgcttgaggccaggac-ttggaactcctggccaacatggcaaaaccccatctctactaaaaatac--aaaaaatagctgggcatggtggcacactcc--------------accct--agccgaggcatgagaatcacttgaacccaggaggcagaggttacagtgagctgagattgtgcctctacaccccaacctgagcgacagaggg
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       667380 359 -   2910086 AGAGGATTTAACTAGCAAATAAAAGTACTAATAAGCTTTTAATCTGA-----GAAAAAAGCAAAATATGGAAAACATATGTACTAAAAA-ATTCATTTAAATGTTCATTACAggcca-ggcactgcatctcacacttgtaatcctagcactctgggagactgaggcaggcagcttgcttgaggctaggac-ttggaactcctggccaacatggcaaaaacccatctctactaaaaatac--aaaaaatagctgggcgtggtggcacactcc--------------accgtgaagccgaggcatgagaatcacttgaacccaggaggcagaggttacagtgagccgagactgtgccactgcaccccaacctgggcgacagaggg
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40692922 362 +  42888418 AGAGGATTTAACTTGCAAATAAAAGTATTAATAAGCTTTTAATCTGAG---AAAAAAAAGCAAAATATGGAGAACATATGTACTAAAAA-GTTCATTTAAATGTTCATTACAggcca-ggcactgcatctcacacttgtaatcctagcacttcgagagactgaggcaggcagattgcttgaggccaggac-ttggaactcctggccaacatggcaaaaccccatctctactaaaaatac-aaaaaaatagctgggcgtggtggcacactcc--------------accgtgaagccgaggcatgataatcacttgaacccaggaggcagaggttacagtgagccgagattgtgccactgcaccccaacctgggtgacagaggg
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             685738 360 -  36342412 AGAA-ATTTAACTTGCAAA------------TAAACTTTTAATCTGAG---AAAAAAAACCAAAACACGAAGAACATATGCACTAAAAGTATTCATTAAAATGTTCATTATAggccagggcatgatggttcacatctgtaatcctagcactttgggaggttgaagtgagagaatcccttgaggccaggagtttgaaacagctgggcaacataacaagacctcttctctaaaaataattt--acaagtcagccggg-----tggtaagcagctgtagtcccagctactcaggaagctgaggcaggacgatcacttgtgcccaggagtttgagtctacagtgagttatgaacatgccactgcactccacccagggcaatagggtt
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I

a score=3539054.000000
s hg38.chr15_KI270850v1_alt    385790 348 +    430880 agactctgtctc----aaaaaaaaaaaaaaaa-----aaaaaGTT-CATTACAGTATTATTTATAGCAAGAAGATACCCAAGAAGCATGTAGTTTTGTTTACATGGCAAGAAGAGGATATGAACTGTTAAGTAGTTTTGATACATCCT-CTTGACATATTTAAGTCATTAAT-ATGGAAGACAATCTAGCAACAAGCAAAAATACTCATGACAGGCTTAAGATACCAGGATGAATACATGCTATAGCTTCCCCTTCATCCTCCAATGCTGAAATGCCAATTTTAAAGAA--------TCTGTAACCATATTAGAAAACAAAAAAGGATATCCTTGGTGTGCCAAAATCACAAAGAATCCTAAAAACAA
s panTro5.chr15              63538867 346 +  83230942 agactctgtctc------aaaaaaaaaaaaaa-----aaaaaGTT-CATTACACTATTATTTATAGCAAGAAGATACCCAAGAAGCATGTAGTTTTGTTTACATGGCAAGAAGAGGATATGAACTGCTAAGTACTTTTGATACATCCT-CTTGACATATTTAAGTCATTAAT-ATGGAAGACAATCTAGCAACAAGCAAAAATACTCATGACAGGCTTAAGATACCAGGATGAATACATGCTATAGCTTCCCCTTCATCCTCCAATGCTAAAATGCCAATTTTGAAGAA--------TCTGTAACCATATTAGAAAACAAAAAAGGATATCCTTGGTGTGCCAAAATCACAAAGAATCCTAAAAACAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80495800 350 +  99763055 agactctgtctc---aaaaaaaaaaaaaaaaa-----aaaaaGTTACATTACACTATTATTTATAGCAAGAAGATACCCAAGAAGCATGTAGTTTTGTTTACATGGCAAGAAGAGGATATGAACTGCTAAGTACTTTTGATACATCCT-CTTGACATATTTAAGTCATTAAT-ATGGAAGACAATCTAGCAACAAGCAAAAATACTCATGACAGGCTTAAGATACCAGGATGAATACATGCTATAGCTTCCCCTTCATCCTCCAATGCTAAAATGCCAATTTTAAAGAA--------TCTGTAACCATATTAGAAAACAAAAAAGGATATCCTTGGTGTGCCAAAATCACAAAGAATCCTAAAAACAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        96076 346 -   1709092 agactctgtctc------aaaaaaaaaaaaaa-----aaaaaGTT-CATTACAGTATTATTTATAGCAAGAAGATACCCAAGAAGCATGTAGTTTTGTTTACATGGCAAGAAGAGGATATGAACTGTTAAGTAGTTTTGATACATCCT-CTTGACATATTTAAGTCATTAAT-ATGGAAGACAATCTAGCAACAAGCAAAAATACTCATGACAGGCTTAAGATACCAGGATGAATACATGCTATAGCTTCCCCTTCATCCTCCAATGCTAAAATGCCAATTTTAAAGAA--------TCTGTAACCATATTAGAAAACAAAAAAGGATATCCTTGGTGTGCCAAAATCACAAAGAATCCTAAAAACAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17255812 342 - 121039945 agactctgtctc----------aaaaaaaaaa-----aaaaTGTT-CATTACAGTATTATTTATAGCAAGAAGATACCCAAGAAGCATGTAGTTTTGTTTACATGGCAAGAAGAGGATATGAACTGTTAAGTAGTTTTGATACATCCT-CTTGACATATTTAAGTCATTAAT-ATGGAAGACAATCTAGCAACAAGCAAACATACTCATGACAGGCTTAAGATACCAGGATGAATACATGCTATAGCTTCCCCTTCATCCTCCAATGCTAAAATGTCAATTTTAAAGAA--------TCTGTAACCATATTAGAAAACAAAAAAGGATATCCTTGGTGTGCCAAAATCACAAAGAATCCTAAAAACAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60936551 342 + 169600520 agactctgtctc--------aaaaaaaaaaaa-----aaaaaaTT-CATTACAGTATTATTTTTAGCAAGAAGATACCCAAGAAGCATGTAGTTTTGTTTACACGGCAAGAAGAGGATATGAACTGTTAAGTAGTTTTGATATATCCT-CTTGACATATTTAAGTCATTAAC-ATGGAAGACAATCTAGCAACAAGCAAAAATACTCATA--AGGCTTAAGATACCAGGAAGAATACATGCTGTAGCTTCCCCTTCATCCTCCACTGCTAAAATGTCAATTTTAAAGAA--------TCTGTAGCCATATTAGAAAACAAAAAAGGATATCCTCGGTGTGCCAAAATCAGGAAGAATCCTAAAAACAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108462959 342 - 171882078 agactctgtctc--------aaaaaaaaaaaa-----aaaaaaTT-CATTACAGTATTATTTTTAGCAAGAAGATACCCAAGAAGCATGTAGTTTTGTTTACACGGCAAGAAGAGGATATGAACTGTTAAGTAGTTTTGATATATCCT-CTTGACATATTTAAGTCATTAAC-ATGGAAGACAATCTAGCAACAAGCAAAAATACTCATA--AGGCTTAAGATACCAGGAAGAATACATGCTGTAGCTTCCCCTTCATCCTCCACTGCTAAAATGTCAATTTTAAAGAA--------TCTGTAGCCATATTAGAAAACAAAAAAGGATATCCTCGGTGTGCCAAAATCAGGAAGAATCCTAAAAACAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        76278 336 -   2311642 ------TCTCaa--------aaaaaaaaaaaa-----aaaaaaTT-CATTACAGTATTATTTTTAGCAAGAAGATACCCAAGAAGCATGTAGTTTTGTTTACACGGCAAGAAGAGGATATGAACTGTTAAGTAGTTTTGATATATCCT-CTTGACATATTTAAGTCATTAAC-ATGGAAGACAATCTAGCAACAAGCAAAAATACTCGTA--AGGCTTAAGATACCAGGAAGAATACATGCTGTAGCTTCCCCTTCATCCTCCACTGCTAAAATGTCAATTTTAAAGAA--------TCTGTAGCCATATTAGAAAACAAAAAAGGATATCCTCGGTGTGCCAAAATCAGGAAGAATCCTAAAAACAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        71897 350 -   1987038 agactctgtctcaaaaaaaaaaaaaaaaaaaa-----aaaaaaTT-CATTACAGTATTATTTTTAGCAAGAAGATACCCAAGAAGCATGTAGTTTTGTTTACACGGCAAGAAGAGGATATGAACTGTTAAGTAGTTTTGATATATCCT-CTTGACATATTTAAGTCATTAAC-ATGGAAGACAATCTAGCAACAAGCAAAAATACTCATA--AGGCTTAAGATACCAGGAAGAATACATGCTGCAGCTTCCCCTTCATCCTCCACTGCTAAAATGTCAATTTTAAAGAA--------TCTGTAGCCATATTAGAAAACAAAAAAGGATATCCTCGGTGTGCCAAAATCAGGAAGAATCCTAAAAACAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21152897 343 -  24206276 agactctgtctc---------aaaaaaaaaaa-----aaaaaaTT-CATTACAGTATTATTTTTAGCAAGAAGATACCCAAGAAGCATGTAGTTTTGTTTACACGGCAAGAAGAGGATATGAACTGTTAAGTAGTTTTGATATATCCT-CTTGACATATTTAAGTCATTAAC-ATGGAAGACAATCTAGCAACAAGCAAAAATACTCATGACAGGCTTAAGATACCAGGAAGAATACATGCTGTAGCTTCCCCTTCATCCTCCACTGCTAAAATGTCAATTTTAAAGAA--------TCTGTAACCATATTAGAAAACAAAAAAGGATATCCTCAGTGTGCCAAAATCAGGAAGAATCCTAAAAACAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        89665 340 -   1397330 agactctgtctc-aaaaaaaaaaaaaaaaaaa-----aaaaaaTT-CATTACAGTATTATTTTTAGCAAGAAGATACCCAAGAAGCATGTAGTTTTGTTTACACGGCAAGAAGAGGATATGAACTGTTAAGTAGTTTTGA----------TTGACATATTTAAGTCATTAAC-ATGGAAGACAATCTAGCAACAAGCAAAAATACTCATA--AGGCTTAAGATACCAGGAAGAATACATGCTGTAGCTTCCCCTTCATCCTCCACTGCTAAAATGTCAATTTTAAAGAA--------TCTGTAGCCATATTAGAAAACAAAAAAGGATATCCTCGGTGTGCCAAAATCAGGAAGAATCCTAAAAACAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       100151 353 -   1784207 agactctattct------caaaaaaaaaaaaa-----aaaaaaaT-CATTACAGTATTATTTTTAGCAAGAAGATACCCAAGAAGCAAGTAGTTTTGTTTACACGGCAAAAAGAGGATATGAACTGTTAAGCAGTTTTGATACATCCT-CTTGACATATTTAAGTCATTAAC-ATGGAAGACAATCTAGCAACAAGCAAAAATACTCATGGCAGGCTTAAGATA-CAGGAAGAATATATGCTGTAGCTTCCCCTTCATCCTCCAATGCTAAAATGTCAATTTTAAAGAAATTTAAAGTCTGTAACCATATTAGAAAACAAAAAAGGATATCCTCGGTGTGCCAAAATCAGGAAGAATCCTAAAAACAA
i colAng1.NW_012117110v1    I 8321 C 0
s calJac3.chr6               22294751 340 + 158406734 agacactgtctc------------aaaaaaaa-----aaaaTGTT-CATTACAGTATTATTTATAGCAAGAAGATACCCAGGAAGCATGTGGTTTTATTTACATGGCAAGGAGAGGATAAGAACTGTTAGGTAGTTTTGATATATCCT-CTTGACATATTTAAGTCATGAAC-ATGGAAGACAATCTACCAACAAACAAAAATACTCATGTCAGGCTTAAGATACCAGGATAAACACATATTATAGCTTCCCCTTCATTCTCCAATGCTAAAATGACAATTTTAAAGAA--------CCTGTAGCCATATTAGAAAACAAAAAAAGATACCCTTGGTGTGCCAAAATCATCAAGAATCCTGAAAACAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50524503 342 +  54856640 agacactgtttc----------aaaaaaaaaa-----aaaaTGTT-GATTACAATATTATTTATAGCAAGAAGGTACCCAGGAAGCATGATGTTTTATTTACATGGCAAGGAAAGGATAAGAACTGTTAGGTAGTTTTGATACATCCT-CTTGACATATTTAAGTCATTAAC-ATGGAAGATAATCTACCAACAAACAAAAATACTCATGtcaggcttaagataccaggatgaacacatattatagcttccccttcattctccaatgctaaaatgccaattttaaagaa--------actttaaccatattagaaaacaaaaaaagatatccttggtgtgccaaaatcatgaagaatcctgaaaataa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       667739 342 -   2910086 agacgctgtctc----------aaaaaaaaaa-----aaaaTGTT-GATTATAGTATTATTTATAGCAAGAAGGTACCCAGGAAGCATGTGGTTTTATTTACATGGCAAGGAGAGGATAAGAACTGTTAGGTAGTTTTGATACATCCT-CTTGACATATTTAAGTCATTAAC-ATGAAAGACAATCTACCAACAAACAAAAATACTTATGTCAGGCTTAAGACACCAGGATGAACACATATTATAGCTTCACCTTCATTCTCCAATGCTAAAATGCCAATTTTAAAGAA--------ACTGTAACCATATTCGAAAACAAAAAAAGATATCCTTGGTGTGCCAAAATCATAAAGAATCCTGAAAACAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40693284 339 +  42888418 agacactgtctc-------------aaaaaaa-----aaaaTGTT-CATTACAGTATTATTTATAGCAAGAAGATACCCAGGAAGCATGTGGTTTTATTTACATGGCAAGGAGAGGATAAGAACTGTTAGGTAGTTTTGATACATTCT-CTTGACATATTTAAGTCATTAAC-ATGGAAGACAATCTACCAACAAACAAAAATAATCATGTCAGGCTTAAGATACCAGGATGAACACATATTATAGCTTCTCCTTCATTCTCCAATGCTAAAATGTCAATTTTAAAGAG--------CCTGTAACCATATTAGAAAACAAAAAAAGATATCCTTGGTGTGCCAATATCACGAAGAATCCTGAAAACAA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             686098 326 -  36342412 agactctgcatc-cttaaaaaacaaacaaaaaCCTCCAAAATGTT-CATTACAGAATTCCTTATAACAAGAAGATACCTA-GAAGCA-----------------GACAAGAACAGGCTGATAACTGTTTAGTAGTTTTTGTGTATCATCCTTGATATATTTAAGTCATTAACTATCAAAGATTATCTATCAACAAACAAAAAAGGTCACAGCAGGCTTAAGATATCA-GACAAGCACATGCTACAGTTTTTCCCTCCTTCTCCAATGCTAAAACGCCAATTTTAAAGAA--------TCCATGGACATATTAGCAATCAAAAA---ATATCCTTGGCGTGCTAGAATCA----------TGAAAACAA
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I

a score=596732.000000
s hg38.chr15_KI270850v1_alt    386138 67 +    430880 GAAATAT-Aggctgggcacgttggctcacgcctgtaatcccagtgcttttggaggctgaggcaggtgg
s panTro5.chr15              63539213 67 +  83230942 GAAATAT-Aggctgggcacgttggctcacgcctgtaatcccagtgcttttggaggctgaggcaggtgg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80496150 67 +  99763055 GAAATAT-Aggctgggcacgttggctcacgcctgtaatcccagtgcttttggaggctgaggcaggtgg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        96422 66 -   1709092 GAAATAT-Aggctgggcacgttggctcacgcctataatcccagtgcttttggaggctgaggcaggt-g
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17256154 66 - 121039945 GAAATAC-Aggctgggcgcgttggctcacgcccgtaatcccagtgctttgggaggctgaggcaggt-g
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60936893 66 + 169600520 GAAATAT-Aggctggacgcgttggttcatgcctgtaatcccagtgctttgggaggctgaggcaggt-g
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108463301 66 - 171882078 GAAATAT-Aggctggacgcgttggttcatgcctgtaatcccagtgctttgggaggctgaggcaggt-g
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        76614 66 -   2311642 GAAATAT-Aggctggacgcattggttcatgcctgtaatcccagtgctttgggaggctgaggcaggt-g
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        72247 66 -   1987038 GAAATAT-Aggctggacgcgttggttcatgcctgtaatcccagtgctttgggaggctgaggcaggt-g
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21153240 66 -  24206276 GAAATAT-Aggctagacgcgttggttcatgcctgtaatcccagtgctttgggaggctgaggcaggt-g
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        90005 66 -   1397330 GAAATAT-Aggctggacgcgttggttcatgcctgtaatcccagtgctttgggaggctgaggcaggt-g
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       100504 66 -   1784207 GAAATAT-Aggctggacgcattggttcatgcctgtaatcccagtgctttgggaggctgaggcaggt-g
i colAng1.NW_012117110v1    C 0 I 2934
s calJac3.chr6               22295091 66 + 158406734 GAAATATAAggctgaacacagtggctcacacctgtaatcccagcgc-ttgggaggctgagggaagt-g
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50524845 66 +  54856640 gaaaTATAAAgctggacaccgtggctcacacctgtaatcccagtgc-ttgggaggctgagggaggt-g
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       668081 66 -   2910086 GAAATATAAggctggacacagtggctcacacctgtaatcccagcgc-ttgggaggctgagggaggt-g
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40693623 66 +  42888418 GAAATATAAggctggacacagtggctcacacctgtaatcccagcac-ttggcaggctgagggaggt-g
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             686424  0 -  36342412 C

a score=126252.000000
s hg38.chr15_KI270850v1_alt    386205 14 +    430880 gatcgcttgagccc
s panTro5.chr15              63539280 14 +  83230942 gatcgcttgagccc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80496217 14 +  99763055 gatcgcttgagccc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        96488 14 -   1709092 gatcgcttgagccc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17256220 14 - 121039945 gatcgcttgagacc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60936959 14 + 169600520 gatcacttgagccc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108463367 14 - 171882078 gatcacttgagccc
i macFas5.chr7              C 0 I 89
s macNem1.NW_012011945v1        76680 14 -   2311642 gatcacttgagccc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        72313 14 -   1987038 gatcacttgagccc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21153306 14 -  24206276 gatcacttgagccc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1        90071 14 -   1397330 gatcacttgagccc
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22295157 14 + 158406734 gattgcttgagccc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50524911 14 +  54856640 gattgcttgagccc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       668147 14 -   2910086 gattgcttgagccc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40693689 14 +  42888418 gattgcttgagccc
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             686424  0 -  36342412 C
e colAng1.NW_012117110v1       100570 2934 -   1784207 I

a score=8281.000000
s hg38.chr15_KI270850v1_alt    386219 1 +    430880 a
s panTro5.chr15              63539294 1 +  83230942 a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80496231 1 +  99763055 a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        96502 1 -   1709092 a
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17256234 1 - 121039945 a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60936973 1 + 169600520 a
i rheMac8.chr7              C 0 I 10465
s macNem1.NW_012011945v1        76694 1 -   2311642 a
i macNem1.NW_012011945v1    C 0 I 15086
s cerAty1.NW_012002657v1        72327 1 -   1987038 a
i cerAty1.NW_012002657v1    C 0 I 9775
s chlSab2.chr29              21153320 1 -  24206276 a
i chlSab2.chr29             C 0 I 9866
s manLeu1.NW_012106908v1        90085 1 -   1397330 a
i manLeu1.NW_012106908v1    C 0 I 15742
s calJac3.chr6               22295171 1 + 158406734 a
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50524925 1 +  54856640 a
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       668161 1 -   2910086 a
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40693703 1 +  42888418 a
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             686424 0 -  36342412 C
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e macFas5.chr7              108463381 89 - 171882078 I

a score=88584.000000
s hg38.chr15_KI270850v1_alt    386220 29 +    430880 ggagttcaagctcagactgggcaacacag
s panTro5.chr15              63539295 29 +  83230942 ggagttcaagctcagactgggcaacacag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80496232 29 +  99763055 ggagttcaagctcagactgggcaacacag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        96503 29 -   1709092 ggagttcaagctcagactgggcaacacag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17256235 29 - 121039945 ggagttcaagatctgactgggcaacacag
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22295172 29 + 158406734 gaagttcaagatcagactgggcaacagag
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50524926 29 +  54856640 gaagttcaagatcagactggacaacacag
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       668162 29 -   2910086 gaagttcaagatcagactgggcaacacag
i cebCap1.NW_016107610v1    C 0 I 166
s aotNan1.NW_018505940v1     40693704 29 +  42888418 gaagttcaagatcagactgggcaacacag
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             686424  0 -  36342412 C
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463381 89 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=33427.000000
s hg38.chr15_KI270850v1_alt    386249 16 +    430880 ggagaccctatctcta
s panTro5.chr15              63539324 16 +  83230942 ggagaccctatctcta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80496261 16 +  99763055 ggagaccctatctcta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        96532 16 -   1709092 ggagaccctatctcta
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17256264 16 - 121039945 ggagaacctatctcta
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22295201 16 + 158406734 ggagacctcgactcta
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50524955 16 +  54856640 ggagacctcaactcta
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40693733 16 +  42888418 ggagacctcaactcta
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e cebCap1.NW_016107610v1       668191 166 -   2910086 I
e otoGar3.GL873530             686424  0 -  36342412 C
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463381 89 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=284895.000000
s hg38.chr15_KI270850v1_alt    386265 119 +    430880 caaaaaaatg--------------------------------aaaaa------gttaagagggtgtagtggcacatgcttgtagtcccagctacttgggacactaaagtgggaggatcaattgggcctggaaggtcgaggctgcaatgagcagtgat
s panTro5.chr15              63539340 119 +  83230942 caaaaaaatg--------------------------------aaaaa------gttaagagggtgtagtggcacatgcttgtagtcccagctacttgggacactaaagtgggaggatcaattgggcctggaaggtcgaggctgcaatgagcagttat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80496277 119 +  99763055 caaaaaaatg--------------------------------aaaaa------gttaagagggtgtagtggcacatgcttgtagtcccagctacttgggacactaaagtgggaggatcaattgggcctggaaggtcgaggctgcaatgagcagttat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        96548 119 -   1709092 caaaaaaatg--------------------------------aaaaa------gttaagagggtgtagtggcacatgcttgtagtcccagctacttgggacactaaagtgggagaatcaattgggcctggaaggtcgaggctgcaacgagcagtgat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17256280 119 - 121039945 caaaaaaatg--------------------------------aaaaa------gttaagacggtgtagtggcacatgcttgtagtcccagctacttgggatgctaaagtgggaggatcaattgggcctgggaggtcgaggctgcaatgagcagtgat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108463470 121 - 171882078 taaaaagatt--------------------------------aaaaaccatgggccaaga----atggtgactcatgcctgttatacaagtgctttgggaggttcagatgggaggactgcttcagcctaggagtttgaggttaccgtgaactatgat
i macFas5.chr7              I 89 I 9271
s calJac3.chr6               22295217 151 + 158406734 caaaaaaaaaaaaaaaaaaaaaaaaaaagaaagaaagaaatgaaaaa------attaatggggtatagtggcacatgcttgtagtcccagctacttgggaagctgaggttggagaatcaactgggcctgggaggtcgaggctgcagtgagcagtgat
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50524971 119 +  54856640 caaaaaaaaa--------------------------------aaaaa------tttaatggggtatagtggcacatgcttatagtcccagctacttgggaagctgaggttggagaatcaactgggcctgggaggtcgaggctgcagtgagcagtgat
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40693749 130 +  42888418 caaaagaaaagaaaagaaaag---------------------aaaaa------attaatggggtatagtggcacatgcttgtagtcccagctacttgggaagctgaggttggagaatcaactgggcctgggaggttgaggctgcagtgagcagtgat
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e cebCap1.NW_016107610v1       668191 166 -   2910086 I
e otoGar3.GL873530             686424   0 -  36342412 C
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=2800.000000
s hg38.chr15_KI270850v1_alt    386384 1 +    430880 c
s panTro5.chr15              63539459 1 +  83230942 c
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80496396 1 +  99763055 c
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        96667 1 -   1709092 c
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17256399 1 - 121039945 c
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22295368 1 + 158406734 c
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50525090 1 +  54856640 c
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40693879 1 +  42888418 c
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e cebCap1.NW_016107610v1       668191 166 -   2910086 I
e otoGar3.GL873530             686424 0 -  36342412 C
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=447140.000000
s hg38.chr15_KI270850v1_alt    386385 494 +    430880 AAAATGTAGCAGGATTTCTTAaggaatcagagagactgatggggtttaggagtatatttattaattaggtgcaccggcccagttggatttacatccaaaggactgagccctgaacaaagagttaagttaccttttaagcatttcgtggggcaggggagatctgtgcagggggaagcatattacagaagcgagaaacaaagacagttatttaattaattgagacatgcattaaatcatttcttactttccaaggaaaaacatgttttacagcttgagtttatctgtctagtgaactttcagctgcacagatagagaaacagggtcttcacaatgcttgggaaaggaggagagacaaggctcactagccacagaaaaacaggcagttaatttttaaagaactccagctctttctctttttcagggggaattgggttttcttacatacaactgagtttctgctta-acattttttaatttcttttaattcctgttcca
s panTro5.chr15              63539460 494 +  83230942 AAAATGTAGCAGGATTTCttaaggaatcagagagactgatggggtttaggagtatatttattaattaggtgcaccggcccagttggatttacatccaaaggactgagccctgaacgaagagttaagttaccttttaagcatttcgtggggcaggggagatctgtgcagggggaagcatattacagaagcaagaaacaaagacagttatttaattaattgagacatgcattaaatcatttcttactttccaaggaaaaacatgttttacagcttgagtttatctgtctagtgaactttcagctgcacagatagagaaacagggtcttcacagtgcttgggaaaggaggagagacaaggctcactagccacagaaaaacaggcagttaatttttaaagaactccagctctttctctttttcagggggaattgggttttcttacatacaactgagtttctgctta-acatttttaaatttcttttaattcctgttcca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80496397 494 +  99763055 AAAATGTAGCAGGATTTCttaaggaatcagagagactgatggggtttaggagtatatttattaattaggtgcaccggcccagttggatttacatccaaaggactgagccctgaacgaagagttaagttaccttttaagcatttcgtggggcaggggagatctgtgcagggggaagcatattacagaagcaagaaacaaagacagttatttaattaattgagacatgcattaaatcatttcttactttccaaggaaaaacatgttttacagcttgagtttatctgtctagtgaactttcagctgcacagatagagaaacagggtcttcacaatgcttgggaaaggaggagagacaaggctcactagccacagaaaaacaggcagttaatttttaaagaactccagctctttctctttttcagggggaattgggttttcttacatacaactgagtttctgctta-acatttttaaatttcttttaattcctgttcca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        96668 494 -   1709092 AAAATGTAGCAGGGTTTCttaaggaatcagagagactgacggggtttaggagtgtatttatgaattaggtgcaccggcccagttggatttacatccaaaggactgagccctgaacaaagagttaagttaccttttaagcatttcgtggggcaggggagatctgtgcagggggaagcatattacagaagtgagaaacaaagacagttatttaattaattgagacgtgcattcaatcatttcttactttccaaggaaaaacatgttttacagcttgagtttatctgtctagtgaactttcagctgcacagatagagaaacagggtcttcagaatgcttgggaaaggaggagagacaaggctcactagccacagaaaaacaggcagttaatttttaaagaactccagctctttctctttttcagggggaattgggttttcttacatacaactgagtttctgctta-acattttttaatttcttttaattcctgttcca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17256400 495 - 121039945 AAAATGTAGCAGGATTTCttaaggaatcagagagactgatggggtttaggaggatatttattaattaggtgcaccggcccagttggattaacatccaaaggactgagccctaaacaaagagttaagttacgttttaagcatttcgtggggcaggggagatctgtgcagggggaagcatattacagaagcaagaaacaaagacggttatttaattaattgagacatgcattaaatgatttcttactttccaaggaaaaacatgttttacggcttgagtttatctgtctagtgaactttcagctgcaaagctagagaaacagggtcttcacaatgcttgggaaaggaggagagataaggttcactagccacagaaaaacaggcagttaatttttaaagaactccagctctttctgtttttcagggggaattgtgttttcttacatacaactgagtttctgcttacacatttttaaatttcttttaattcctgttcca
i nomLeu3.chr6              C 0 C 0
e aotNan1.NW_018505940v1     40693880   0 +  42888418 C
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22295369   0 + 158406734 C
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e cebCap1.NW_016107610v1       668191 166 -   2910086 I
e otoGar3.GL873530             686424   0 -  36342412 C
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e saiBol1.JH378108           50525091   0 +  54856640 C

a score=204860.000000
s hg38.chr15_KI270850v1_alt    386879 73 +    430880 Acaccactcgactccagcctgcatgacaagaatgagaccctgtctcaaaaa-acaaaaaCC--------------AGCAAGACAGATG
s panTro5.chr15              63539954 73 +  83230942 Acaccactcgactccagcctgcatgacaagaatgagaccctgtctcaaaaa-acaaaaaCC--------------AGCAAGACAGATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80496891 73 +  99763055 Acaccactcgactccagcctgcatgacaagaatgagatcctgtctcaaaaa-acaaaaaCC--------------AGCAAGACAGATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        97162 73 -   1709092 Acaccactcaactccagcctgcatgacaagaatgagaccctgtctcaaaaa-acaaaaaCC--------------AGCAAGACAGATG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17256895 73 - 121039945 Acaccactcgactccagcctgcatgacaagaatgagaccctgcctcaaaaa-acaaaaaCT--------------AGCAAGACAGATG
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22295369 88 + 158406734 ataccattcgactccagcctacatgataagaatgagactctgtttcaaaaaaacaataaccaagaaaaTACAACAAGCAAGACAGATG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50525091 88 +  54856640 acaccatgtgactccagcctacatggtaagaatgagaccctgtctcaaaaaaacaataaccaagaaaaTACAACAAGCAAGACAGATG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       668357 88 -   2910086 acaccactagactccagcctacatgataagaatgagaccctgtctcaaaaaTACAATAACCAAGAAAATACAACAAGCAAGACAGAGG
i cebCap1.NW_016107610v1    I 166 C 0
s aotNan1.NW_018505940v1     40693880 88 +  42888418 acaccattcaacttcagcctacatgataagaatgagaccctgtctcaaaaaaacaataaccaagaaaaTACAACAAGCAAGACAGATG
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e otoGar3.GL873530             686424  0 -  36342412 C
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=837431.000000
s hg38.chr15_KI270850v1_alt    386952 255 +    430880 GATTCAAAGTGGAAGGAGGAGATGTTG--AAAGAAGACT-TAACAAAATAGGAGAGCTGCTCCAGATATTACAAAGCTTGAGAGGTGTAT----AAAAGGAGTTACCTATAGGACTATTGACAATGACTGAGTTGGAGGAGCCCAGTAGAAGCAGACAGGCTGGTTCTACTACTTCACCTGTGAACCAGGAACCTGATGACATCCAGGTGGCATGATGAGACTACATATCCAGAAGTTTAGCTACTATTACATCTCTCCCTT
s panTro5.chr15              63540027 255 +  83230942 GATTCAAAGTGGAAGGAGGAGATGTTG--AAAGAAGACT-TAACAAAACAGGAGAGCTGCTCCAGATATTACAAAGCTTGAGAGGTGTAT----AAAAGGAGTTACCTATAGGACTATTGACAATGACTGAGTTGGAGGAGCCCAGTAGAAGCAGACAGGCTGGTTCTACTACTTCACCTGTCAACCAGGAACCTGATGACATCCAGGTGGCATGATGAGACTACATATCCAGAAGTTTAGCTACTATTACATCTCTCCCTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80496964 255 +  99763055 GATTCAAAGTGGAAGGAGGAGATGTTG--AAAGAAGACT-TAACAAAATAGGAGAGCTGCTCCAGATATTACAAAGCTTGAGAGGTGTAT----AAAAGGAGTTACCTATAGGACTATTGACAATGACTGAGTTGGAGGAGCCCAGTAGAAGCAGACAGGCTGGTTCTACTACTTCACCTGTGAACCAGGAACCTGATGACATCCAGGTGGCATGATGAGACTACATATCCAGAAGTTTAGCTACTATTACATCTCTCCCTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        97235 251 -   1709092 GATTCAAAGTGGAAGGAGGAGATGTTG--AAAGAAGACT-TAACAAAATAGGAGAGCTGCTCCAGATATTACAAAGCTTGAGAGGTGTAT-----AAAGGAGTTACCTATAGGACTATTGACAATGACTGAGTTGGAGGAGCCCAGTAGAAGCAGACAGGCTGGTTCTACTACTTCACCTGTGAACCAGGAACCTGATGACATCCAGGTGAC---ATGAGACTACATATCCAGAAGTTTAGCTACTATTACATCTCTCCCTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17256968 254 - 121039945 GATTCAAACTGGAAGGAGGAAATGTTG--AAAGAAGACT-T-ACAAAATAGGAGAGCTGCTCCAGATATTACACAGCTAGAGAGGTGTAT----AAAAGGAGTTACCTATAGGACTATTGACAATGACTGAGTTGGAGGAGCCCAGTAGAAGCAGACAGGCTGGTTCTACTACTTCACCTGTGAACCAGGAACCTGATGATATCCAGGTGGCATGATGAGACTACATATCCAGAAGTTTTGCTACTATTACATCTCTCCCTT
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22295457 256 + 158406734 GATTCAAACTGGAAGGAGGGAACATTG--AAAGAAGACTGTTAGAAAACAGGAGAGTTGCTCCAGATATTGCACAGCTTGAAAGGTGTAT----AAAAGGAGTTACTTATACGACTATTGACAATGACTGCATTGGAGAAGCCCAGTAGAAGCATACAGGCTGATTCTACTACTTCACCTATGAACCAGGAACCTGATGATATCCAGGAGGGATGATGAGACTACATATCCGGAAGTTTTGCTACTATTACATCTCTCTCTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50525179 256 +  54856640 GATTCAAACTGGGAGGAGGAAACATTG--AAAGAAGACTGTTACAAAACAGGAGAGCTGCTCTGGATATTGCACAGCTTAAGAGGTGTAT----AAAAGGAGTTACTTACAGGACTATTGACAATGACTGAGTTGGAAGGGCCCAGTAGAAGCAGACAGGCTGATTCTACTACTTCACCTGAGAACCAGGAACCTGATGATATCCAGGAGGGATGATGAGACTACATATCCAAAAGTTTTGCTACTATTACATCTCTCCCTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       668445 254 -   2910086 GGTTCAACCTGGAAGGAGGAAACATTG--AAAGAAGACTGTTACAAAACAGGAGAGCTGCTCCAGATATTGTATAGCTT--GAGGTGTAT----AAAAGGAGTTACTTATAGGACTATTGACAATGACTGAGTTGGAAGAGCCCAGTAAAAGCACACAGGCTCATTCTACTACTTCACCTGTGAACCAGGAACCTGATGATATCCAGGAGGGACGATGAGACTACATATCCAGAAGTTTTGCTACTATTACATCTCACCCTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40693968 256 +  42888418 GATTCAAACCGGAAAGAGGAAACATTG--AAAGAAGACTGTTACAAAACAGGAGAGCTGCTCCAGATACTGCACAGCTTGAGAGGTGTAT----AAAAGGAGTTACTTATAGGACTATTAACAATCACTGAGTTGGAGGAGCCCAGTAGAAGCAGACAGGCTGATTCTACTACTTCACCTGTGAACCAGGAACCTGATGATATCCAGGAGGGATGATGAGACTACATATCCAGAAGTTTTGCTGCTATTACATCTCTCCCTT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             686424 254 -  36342412 GATTCAAATTAGAAGGAGAAAAATTTGCCAGAGGATACTGTTACAGAAGGGAAGAGCTGCTCCACACAGTGCACAGGTGGAG-GATGTGACAGGAATAGGAGCC-CCTATGGGACAAATGACAGTGGCCGATCTGGAAGAACCCAGCAGAAGCAAAGGGGCTGGCT-GGCTACTTCATCTG--AACCAGGAATCTGACAACA-CCAGGTGGCATGGTAAGGCCATGTATCCAGAAGCTTTGCGACTGTCACATCTCCCCC--
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54451766 1730 +  91889043 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=228400.000000
s hg38.chr15_KI270850v1_alt    387207 61 +    430880 GTAATTTCCCATCCTGAGAGCAGGCTAGCATAAACCTACACAGCATTTGCACACAAGATTT
s panTro5.chr15              63540282 61 +  83230942 GTAATTTCCCACCCTGAGAGCAGGCTAGCATAAACCTACACAGCATGTGCACACAAGATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80497219 61 +  99763055 GTAATTTCCCACCCTGAGAGCAGGCTAGCATAAACCTACACAGCATGTGCACACAAGATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        97486 61 -   1709092 GCAACTTCCCATCCTGAGAGCAGGCTAGCATAAACCTACACAACATTTGCACACAAGGTTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17257222 61 - 121039945 GTAACTTCCCATCCTGAGAGCAGGCTAGAATAAACCTACACAGCATTTGCACACAAGGTTT
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22295713 60 + 158406734 -TAACTTCCCATCCTGAGAGCAGGCTAGAATAAACCTACACATCATTTGCACACAAAGTTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50525435 61 +  54856640 GTAACTTCCCATCCTGAGAGCAGGCTAGAATAAACCTACACATCATTTGCACAAAAGGTTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       668699 61 -   2910086 GTAACTTCCCATCCTGAGAGCAGTCTAGAATAAACCTACACATCATTTGCACACAAGGTTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40694224 61 +  42888418 GTAACTTCCCATCCTGAGAGCAGGCTAGAATAAACCTACACATCATTTGTACACAAGATTT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             686678 57 -  36342412 ACAATTTCCCATCCTGAAGGCAA-CTAGAGTAAACTTACACAGCAACTGCACACAG---CT
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54453496 61 +  91889043 GTGCTCTCTCATCCTGAGGACAGGCTGGAGTAAATGGAGATGGTATCTGCGCACTGGCTTT
i canFam3.chr3              I 1730 I 17
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=86391.000000
s hg38.chr15_KI270850v1_alt    387268 27 +    430880 CTCAGGCA-TTTCAAAAACAAATGTC--AT
s panTro5.chr15              63540343 27 +  83230942 CTCAGGCA-TTTCAAAAACAAATGTC--AT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80497280 27 +  99763055 CTCAGGCA-TTTCAAAAACAAATGTC--AT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        97547 27 -   1709092 CTCAGGCA-TTTCAAAAACAAATGTC--AT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17257283 26 - 121039945 CTCAGGCA--TTCAAAAACAAATGTC--AT
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22295773 27 + 158406734 CTCAGGCA-TTTCAAAAACAAATGTC--AT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50525496 27 +  54856640 CTCGGGCA-TTTCAAAAACAAACATC--AT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       668760 29 -   2910086 CTCAGGCA-TTTCAAAAACAAATGTCATAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40694285 27 +  42888418 CTCAGGCA-TTTCAAAAACAAATGTC--AT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             686735 28 -  36342412 TTCAAGCAATCCCAAATAGCAAAGTC--AT
i otoGar3.GL873530          C 0 I 492
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54453557 17 +  91889043 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=761292.000000
s hg38.chr15_KI270850v1_alt    387295 310 +    430880 TTAggctaggtgcggt--ggctcacgcctgtaatcctagtactttgggaggctgaggtgggtggatcacctgaggtgggtggatcacctgaggtcaggaattcaaaactagcctggccaacatggtgaaacctcatctctactaaaaatacaaaaattacccgggcatggtggcgcacacctgtaatcccagctactagggaggctgaagcaggagaatcgcttgaacgtgggacgcagaggttgcagtgagctgagattgcac-------cactccagcctgagtgacagagcaaaactctgtc-tc--aa----aaaaacaaaa
s panTro5.chr15              63540370 292 +  83230942 TTAggctaggtgcggt--ggctcatgcctgtaatcctagtactttgggagg------------------ctgaggtgggtggatcacctgaggtcaggaattcaaaactagcctggccaacatggtgaaacctcatctctactaaaaatacaaaaattacccgggcatggtggtgcacacctgtaatcccagctactagggaggctgaagcaggagaatcgcttgaacgtgggaggcggaggttgcagtgagctgagattacac-------cactccagcctgagtgacagagcaaaactctgtc-tc--aa----aaaaaaaaaa
i panTro5.chr15             C 0 I 1
s panPan2.chr15              80497307 292 +  99763055 TTAggctaggtgcggt--ggctcatgcctgtaatcctagtactttgggagg------------------ctgaggtgggtggatcacctgaggtcaggaattcaaaactagcctggccaacatggtgaaacctcatctctactaaaaatacaaaaattacccgggcatggtggtgcacacctgtaatcccagctactagggaggctgaagcaggagaatcgcttgaacgtgggaggcggaggttgcagtgagctgagattgcac-------cactccagcctgagtgacagagcaaaactctgtc-tc--ca----aaaaaaaaaa
i panPan2.chr15             C 0 I 1
s gorGor5.CYUI01015556v1        97574 290 -   1709092 TTAggctagatgcggt--ggctcacgcctgtaatcctagtactttgggagg------------------ctgaggtgggtggatcacctgaggtcaggaattcaaaactagcctggccaacatggtg-aacctcatctctact-aaaatacaaaaattacccgggcatggtggcgcacacctgtaatcccagctactagggaggctaaagcaggagaattgcttgaacgtgggaggcggaggttgcagtgagctgagatcgcac-------cactccagcctgagtgacagagcaaaactctgtc-tc--aa----aaaaacaaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17257309 301 - 121039945 TTAggctaggcgtggt--ggctcatgcctgtaatcctagcactttgggagg------------------ctgaggtgggtggatcacctgaggtcgggaattcaaaactagcctggccaacgtggtgaaacctcatctctactaaaaatacaaaaattacccgggcatggtggcatgcacctgtaatcccagctactagagaggctgaagcaggagaattgcttgaacctaggaggcagaggttgcagtgagccaagatcacgccactg--cacttcagcctgggggacagagtgagactccacc-tc--aaaaacaaaaacaaaa
i nomLeu3.chr6              C 0 I 7
s calJac3.chr6               22295800 299 + 158406734 TTAggctaggagtggcaggactcacgcctgtaattccagcactttcggagg------------------ctgaagtgggtggatcaactgaggtcaggaattcgagactagcctggccaacat-gtcaactctcatctctactgaaactataaaaatcagccaagcacggtggtatacacctgtaatcccagatactagggaggctgaggtagaagaactgcttgaacctgggaggtgaaggttgcagtgagctgagatcataccaatg--ctctccagtctgggcaacagagaaaaactccttagtc--aa----aaaaacaaaa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50525523 297 +  54856640 TTAAgctaggagtggt--ggctcacgcctgtaatcccaacacttttggagg------------------ctgaagtgggtggatcacctgaggtcaggaattcgagaccagcctggccaacat-gtcaactctcatctctactgaaactacaaaaatcagccaagtacggtggtacacatatgtaatccaagctactagggaggctgagatataagaactgcttgaacatgggaggtgaaggttgcagtgagcggagatcatgccagtg--ctctccagactgagcaacagagaaaaactcctttgtc--aa----aaaaacaaaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       668789 299 -   2910086 TTAggctaggagtggt--ggctcatgcctgtaatcctaacactttgggagg------------------ctgaagtgggtggatcacctgaggtcaggaattcgagaccagcctggctaacat-gtcaactctcatctctactgaaactacaaaaatcagccaagcatggtggtacacacctgtaatcccagctacccgggaggctgaggtagaagaactgcttgaacctgggaggtaaaagttgcagtgagctgagattatgccagtg--ctctccagcctgggcaacagaggaaaactcctttgtcaaaa----aaaaacaaaa
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40694312 299 +  42888418 TTAggctaggagtggc--ggctcacacctataatcccagcacttttggaag------------------ctgaagtgggtggatcacctgaggtcaggaattcgagagcagcctggccaacat-gtcaactctcatctctactgaaactacaaaaatcagccaagcacggtggtacacacctgtaatcccagctactagggagggtgaggtagaagaactgcttgaacctgggaagtgaaggttgcagtgagctgagatcatgccaatgctctctccagcctgggcaacagagaaaaactcctttgtc--aa----aaaaacaaaa
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54453557  17 +  91889043 I
e otoGar3.GL873530             686763 492 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=636597.000000
s hg38.chr15_KI270850v1_alt    387605 299 +    430880 CAggctgggcgcagtggttcacgcctataatctcagtattttg-ggaggcggaggtgggtggatcgcctgaggtcaggagtttgagaccagcctgaccaacatggtgaaaccctgtctctactaaaaacacaaaaattagctgggcgtggtggtgggtgcccgtaatcccaactacttgggaggctgaggcaggagaatcttttgaacccaggaggtggaggttacagtgacccaagatcatgccactgcactccagtctgggtgacagagcgagactccatct------gaaaaacaaaaacaaa
s panTro5.chr15              63540663 299 +  83230942 CAggctgggcgcggtggttcacgcctataatcccagtattttg-ggaggcggaggtgggtggatcgcctgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggtgggtgcctgtaatcccaactacttgggaggctgaggcaggagaatcttttgaacccaggaggtggaggttacagtgacccaagatcatgccactgcactccagtctgggtgacagagcgagactccatct------gaaaaacaaaaacaaa
i panTro5.chr15             I 1 C 0
s panPan2.chr15              80497600 299 +  99763055 CAggctgggcgcggtggttcacgcctataatcccagtattttg-ggaggcggaggtgagtggatcgcctgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggtgggtgcctgtaatcccaactacttgggaggctgaggcaggagaatcttttgaacccaggaggtggaggttacagtgacccaagatcatgccactgcactccagtctgggtgacagagcgagactccatct------gaaaaacaaaaacaaa
i panPan2.chr15             I 1 C 0
s gorGor5.CYUI01015556v1        97864 297 -   1709092 CAggctgggcgcggtggttcacgcctataatcccagtattttg-ggaggcggaggtgggtggatcgcctgaggtcaggagtttgagaccagcctgaccaatatggtgaaaccctatctctactaaaaatacaaaaattagctgggcgtg--ggtgggcgcctgtaatcccaactacttgggaggctgaggcaggagaatcttttgaacccaggaggtggaggttgcagtgacccaagatcatgccactgcactccagtctgggtgacagagcgagactccatct------gaaaaacaaaaacaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s calJac3.chr6               22296099 294 + 158406734 CAggctgggcacagtggctcacgcctataatcccagcactttgggaaagccgaggcaattggatcgtctgaggtcaggagtttgagaccagcctgaccatcatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggcaggcacctgtaatcccaactacttgagaggctgaggtaggagaatcgcttgaact------gcacaggttgcagtgagccgagatcacaccactgcactccaacctgggcgacagagtgagactctgtctcaac--aaaaaacta----aaa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50525820 298 +  54856640 CAggctgggcacagtggctcacgcctataatcccagcactttggggaagccaaggcgggtggatcgtctgaggtcaggagtttgagaccagcctgaccaacatggtgaaaccccatctctactaaaaatgcaaaaattagctgggcatggtggcaggtacctgtaatcccaactactcaagaggctgaggtaggagaatcgcttgaact------gcagagggtgcagtgagccaagatcacaccactgcactccagcctgggtgacagagtgagactctgtcccaat--aaaaaaccaaaacaaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       669088 300 -   2910086 CAggctgggcacagtggctcacgcctataatcccagcactttggggaagacaaggcgggcggatcgtctgaggtcaggagtttgagaccagcctgaccaacatggtgaaaccacgtctctactaaaaatacaaaaattagctgggcatggtggcagacacctgtaatcccaactactcaagaggctgaggtagaagaatcggttgaact------gcagaggttgcagtgagccgagatcacaacactgcactccagcctgggcgacagagtgagactctgtctcaataaaaaaaaccaaagcaaa
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40694611 298 +  42888418 CAggctgggcacagtgtctcacgcctataatcccagcactttgaggaagccgaggcgggtggatcgtctgaggtcaggagtttgagaccagtctgaccaacatggtgaaacctcgtctgtactaaaaatacaaaaattagctgggcatggtggcaggcacctgtaatcccaactactcgaaaggttgaggtaggagaatcgcttgaact------gcagaggttgcagtgagctgagatcacaccactgcactccagcctgggcgatggagtaagactccgtctcaat--aaaaaaccaaaacaaa
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54453557  17 +  91889043 I
e otoGar3.GL873530             686763 492 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e nomLeu3.chr6               17257610   7 - 121039945 I

a score=17363.000000
s hg38.chr15_KI270850v1_alt    387904 10 +    430880 c-aaaaaaaCC
s panTro5.chr15              63540962 11 +  83230942 caaaaaaaaCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80497899 11 +  99763055 caaaaaaaaCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        98161 10 -   1709092 c-aaaaaaaCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17257617 10 - 121039945 -caaaaaAACC
i nomLeu3.chr6              I 7 C 0
s calJac3.chr6               22296393  9 + 158406734 --caaaaaCCC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50526118  9 +  54856640 --caaaaaCCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       669388  9 -   2910086 --caaaaaCCC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40694909  9 +  42888418 --caaaaaCCC
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54453557 17 +  91889043 I
e otoGar3.GL873530             686763 492 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=14842.000000
s hg38.chr15_KI270850v1_alt    387914 4 +    430880 AAAG
s panTro5.chr15              63540973 4 +  83230942 AAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80497910 4 +  99763055 AAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        98171 4 -   1709092 AAAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17257627 4 - 121039945 AAAG
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22296402 4 + 158406734 AAAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50526127 4 +  54856640 AAAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       669397 4 -   2910086 GAAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40694918 4 +  42888418 GAAG
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54453574 4 +  91889043 AAAG
i canFam3.chr3              I 17 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e otoGar3.GL873530             686763 492 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=1424631.000000
s hg38.chr15_KI270850v1_alt    387918 452 +    430880 GCCATTTAAAAATACAAATTACAACCAATATTGACCAAATATTTTCAGAAAACCAAGAGATTCAATGTGGCAGCAACCTT-AACATAAAACCTA-TACCTTTcccataaatatatacacctactgtgtacccataaaaattaaaaGT-AAAAAAATTTTAACTCTTATATC-TGAGGAAATGAAGGATAATAAAGCCAAGAGAACAAAGTTTTAAAATAAA---TAATAATTCCCCCAAAGATACCAGACGATCCATTGGAGACCTTGGAAGTTAAAATTTGATTA----AATAAAGCTGACAAATGGTCTGATTGGTAGA---ATGTTCACAAATGAAAAACTTAATAATGAGGTGGAAAGAAAAAGCAGTTCTCTTAAA-----ATATTATGCAGGAG---AATAAAAACGTTGAAAAATACAAGAAGATTGGAAACACTCCTCACTACTACTCAActggacacgttcctag
s panTro5.chr15              63540977 452 +  83230942 GCCATTTAAAAATACAAATTATAACCAATATTGACCAAATATTTTCAGAAAACCAAGAGATTCAATGTGGCAGCAACCTT-AACATAAAACCTA-TACCTTTcccataaatatatacacctactgtgtacccataaaaattaaaaGT-AAAAAAATTTTAACTCTTATATC-TGAGGAAATGAAGGATAATAAAGCCAAGAGAACAAAGTTTTAAAATAAA---TAATAATTCCCCCAAAGATACCAGACGATCCATTGGAGACCTTGGAAGTTAAAATTTGATTA----AATAAAGCTGACAAATGGTCTGATTGGTAGA---ATGTTCACAAATGAAAAACTTAATAATGAGGTGGAAAGAAAAAGCAGTTCTCTTAAA-----ATATTATGCAGGAC---AATAAAAACGTTGAAAAATACAAGAAGATTGGAAACACTCCTCACTACTACTTAACTGGACACGTTCCTAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80497914 451 +  99763055 GCCATTTAAAAATACAAATTATAACCAATATTGACCAAATATTTTCAGAAAACCAAGAGATTCAATGTGGCAGCAACCTT-AACATAAAACCTA-TACCTTTcccataaatatatacacctactgtgtacccataaaaattaaaaGT--AAAAAATTTTAACTCTTATATC-TGAGGAAATGAAGGATAATAAAGCCAAGAGAACAAAGTTTTAAAATAAA---TAATAATTCCCCCAAAGATACCAGACGATCCATTGGAGACCTTGGAAGTTAAAATTTGATTA----AATAAAGCTGACAAATGGTCTGATTGGTAGA---ATGTTCACAAATGAAAAACTTAATAATGAGGTGGAAAGAAAAAGCAGTTCTCTTAAA-----ATATTATGCACGAC---AATAAAAACGTTGAAAAATACAAGAAGATTGGAAACACTCCTCACTACTACTTAACTGGACACGTTCCTAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        98175 449 -   1709092 GCCATTTAAAAATACAAATTACAACCAATATTGACCAAATATTTTCAGAAAACCAAGAGATTCAATGTGGCAGCAACCTT-AACATAAAACCTA-TACCTTTcccataaatatatacacctactgtgtacccataaaaattaaaaGT-AAAAAAATTTTAACTCTTCTATC-TGAGGAAATGAAGGATAATAAAGCCAAGAGAACAAAGTTTTAAAATAAA---TAATAATTCCCCCAAAGATACCAGACGATCCATTGGAGACCTTGGAAGTTAAAATTTGATTA----AATAAAGCTGACAAATGGTCTGATTGGTAGA---ATGTTCACAAATGAAAAACT---TAATGAGGTGGAAAGAAAAAGCAGTTCTCTTAAA-----ATATTATGCAGGAG---AATAAAAACGTTGAAAAATACAAGAAGATTGGAAACACTCCTCACTACTACTCAACTGGACACGTTCCTAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17257631 452 - 121039945 GCCATTTAAAAATACAAATTACAACCAATATTGACCAAATATTTTCAGAAAACCAAGAGATTCAATGTGGCAGCAACCTT-AACATAAAACCTA-TACCTTTcccataaatatatacacctactctgtacccataaaaattaaaaGT-AAAAAAATTTTAACTCTTATATC-TGAGGAAATGAAGGATAATAAAGCCAAGAGAACAAAGTTTTAAAATAAA---TAATAATTCCCCCAAAGACACCAGATGATCCATTGGAGACCTTGGAAGTTAAAATTTGATTA----AATAAAGCTGACAAATAGTCTGATTGGTAGA---ATGTTCACAAATGAAAAACTTAATAATGAGGTGGAAAGAAAAAGCAGTTCTCTTAAA-----ATATTATGCAGGAG---AATAAAAATGTTGAAAAATACAAGAAGATTGGAAACACTCCTCAGTACTACTCAACTGGACACGTTCCTAG
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22296406 440 + 158406734 GCCATTTAAAAATACAAATTATAACCAATATTGACCAAATATTTTCAGAAAACCAACAGAGTCAATGTGGCAGCAACCTTAAACAT-AAACCTA-TACCTTTcccgtaaatgtatatacctactgtgtacccataaaaattaaaaGT-AAAAAAAAATTAACTC--ATATC-TGAGGAAATGAAGGATAATAAAGTCAAGAGAATAAGATTTTA----AGA---CAATAATTCCCCCCAAGATACCAGACGAT-TGCTGGAGACCTTGGAAGTTAAAATTTGATTATTTTAATAAAGCTGACAAATGGTCTGACTGGTATA---ATGTTCACAAATAAAAAACT---TAATGAGGCAGAAAGAAAA---AGTTCTCTCAA--------ATTATGCAGGAG---AATAAAAATGTTGAAAAATATAAGAAGACTGGAAACACTCATCACTACCACTCCACTGGACATGTTCATAG
i calJac3.chr6              C 0 I 23
s saiBol1.JH378108           50526131 440 +  54856640 GCCATTTAAAAATACAAATTACAACCAATATTGACCAAATATTTTCAGAAAACCAATAGATTGAATGTGGCAGCAACCTT-AACAT-AAACCTACTACCTTTCCCAC-AATGTATATACCTACTGTGTAACCATAAAAATTAAAGGT-AAAAAAAAATTAACTC--ATATCTTAAGGAAATGAAGGATAATAAAGCCAAAAGCATAAGATTTTA----AGA---CAAAAATTCCCCCAAAGATACCAGATGAT-TGCTGGAGACCTTGGAAGTTAAAATTTGATTATTTTAATAAAGCTGACAAATAGTCTGACTGGTATA---ATGTTCACAAATGAAAAACT---TAATTAGGTGGAAAGAAAA---AGTTCTCTCAA--------ATTATGCAGGAG---AATAAAAATGTTGAAAAATATAAGAAGATTGGAAAAACTCATCACTACCACTCAACTGGACATGTTCCTAG
i saiBol1.JH378108          C 0 I 1
s cebCap1.NW_016107610v1       669401 440 -   2910086 GCCATTTAAAAATACAAATTATAACCAATATTGACCAAATGTTTTCAGAAAAACAACAGATTCAATGTGGCAGCAACCTA-AACAT-AAACCTA-TACCTTTTGcataaatgtatctacctactgtgtacccataaaaattaaaGGT-AAAAAAAAATTAACTC--CTATCTTGAGGAAATGAAGGATAATAAAGCCAAGAGAATTAGATTTGA----AGA---CAATAATTCCTCCAAAGATACGAGACAAT-TGCTGGAGACCTTGGAAGTTAAAATTTGATTATTTTAATAAAGCTGACAAATGGCCTGACTGGTATA---ATGTTCACAAATGAAAAATT---TAATGAGGTGGAAAGAAAA---AGTTTTCTCAA--------ATTATGCAGAAG---AATAAAAATATTGAAAACTATAAGAAGATTGGAAACACTCATCACTACCACTCAAATGGACATGTTCCTAG
i cebCap1.NW_016107610v1    C 0 I 1
s aotNan1.NW_018505940v1     40694922 440 +  42888418 GCCATTTAAAAATACAAATTATAACCAATATTGACCAAATATTTTCAGAAAACCAACAGATTCAATGTGGCAGTAACCTT-AACAT-AAACCTA-TACCTTTcccataaatgtatacacctaccgcgtacccgtgaaaattaaaaGTAAAAAAAAAATTAACTC--ATATC-TGAGGAAATGAAGGATAATAAAGCCAAGAAAATAATATTTTA----AGA---CAATAATTCCCCCAAAGATACTAGACGAT-TGCTGGAGACCTTGGAAGTTAAAATCTGATTATTTTAATAAAGCTGACAAATGGTCTGACTGGTGTA---ATGTTCACAAATGAAAAACT---TAATGAGGTGGAACGAAAA---AGTTCTCTGAA--------ATTATGCAGGAG---AATAAAAATGTTGAAAAATATAAGAAGATTGGAAACACTCATCACTACCACTCAACTGGACATGTTCCTAG
i aotNan1.NW_018505940v1    C 0 I 1
s otoGar3.GL873530             687255 379 -  36342412 GCTATTTTTAAATGCAAATTACAGTCAGTATACATGAAACATTGTCAGAAAACCAACAAATTCAATATGGCAGCAATCT--------ATACCTA-CAC--------------------------------------------------------------------------TGAGG-AATGACGGATAATAAAGCCAAGAGAACAAGATTTTTAAATAAATACTAGTAATTTCCAGAAAGATACTAGACAATCCACCGGAAATCTTGGAAGTTAAAATCTGATTACTTAAATAAAGCCAATTAACATTCTGAATGGTAGAAAGATGGACAGAGCTGAAAAACTTAATAGTGAGGTGCAATGACAAAA-GGTTCTCTCAAA-----ATATCAAGCAGGAGGACAATAAAAATGGTCAAAAATGAAAGAAAATTGCAAAG----TTCATCACTACTCAATTAGGCAC-TTCCTAG
i otoGar3.GL873530          I 492 I 1
s canFam3.chr3               54453578 352 +  91889043 GCTATTTTAAAATACAAGTTACAACCGATATTGATCAAGTATTTTCAG---ACCAACAGAATC-ATGAGGCAGCAAGCTT-AACATGAAATCTA-CACCT-------------------------------------GAATAAAGGT-GAAAAAA-------------AGC---------------------------AAAGAACAAGATTTTA----AAA---TAAATATGTCC----AAAAACTAGAAGGTTCACAGGAGACCTCCAAAGTTAAAATTTGATTA----CAGAAGACCAGCAAATGGTCTGCTTGGTGTA---AT----AGAGCTAAAGAACT---TAA----GTGGAAAGACAA---AGTTTTCCAAGAATTATATTTTTTTCAACAA---CAAAAAAAAGTTGAAAAATGAATGAA-ATTGGAAAAATTACTCATTA-TAGGCAACTGGATGTATACTAA-
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=-135.000000
s hg38.chr15_KI270850v1_alt    388370 3 +    430880 gct
s panTro5.chr15              63541429 3 +  83230942 GCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80498365 3 +  99763055 GCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        98624 3 -   1709092 GCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17258083 3 - 121039945 GCT
i nomLeu3.chr6              C 0 C 0
s saiBol1.JH378108           50526572 2 +  54856640 -GT
i saiBol1.JH378108          I 1 I 21
s cebCap1.NW_016107610v1       669842 2 -   2910086 -GT
i cebCap1.NW_016107610v1    I 1 I 21
s aotNan1.NW_018505940v1     40695363 2 +  42888418 -GT
i aotNan1.NW_018505940v1    I 1 I 19
s otoGar3.GL873530             687635 2 -  36342412 AC-
i otoGar3.GL873530          I 1 C 0
s canFam3.chr3               54453930 3 +  91889043 GCT
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22296846 23 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=57333.000000
s hg38.chr15_KI270850v1_alt    388373 43 +    430880 cttcactcatac----catcacacta---atctttacagcaacccttcac
s panTro5.chr15              63541432 43 +  83230942 CTTCACTCATAC----CATCACACTA---ATCTTTACAGTAACCCTTCAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80498368 43 +  99763055 CTTCACTCATAC----CATCACACTA---ATCTTTACAGTAACCCTTCAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        98627 43 -   1709092 CTTCACTCATAC----CATCACACTA---ACCTTTACAGTAACCCTTCAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17258086 43 - 121039945 CTTCGTTCATAC----CATCACACTA---ATCTTTACAGTAACCCTTCAC
i nomLeu3.chr6              C 0 C 0
s otoGar3.GL873530             687637 47 -  36342412 CCGTACTCACACAATGTATCACACTA---ATCTTTACATTAATCCTTCCC
i otoGar3.GL873530          C 0 I 1
s canFam3.chr3               54453933 46 +  91889043 CTTTACACATGC----TCTCTCTTTGTATTTCTTTACAGCAACCATTCAC
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018505940v1     40695365 19 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22296846 23 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e cebCap1.NW_016107610v1       669844 21 -   2910086 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e saiBol1.JH378108           50526574 21 +  54856640 I

a score=781.000000
s hg38.chr15_KI270850v1_alt    388416 1 +    430880 g
s panTro5.chr15              63541475 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80498411 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        98670 1 -   1709092 G
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17258129 1 - 121039945 G
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22296869 1 + 158406734 A
i calJac3.chr6              I 23 C 0
s canFam3.chr3               54453979 1 +  91889043 A
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018505940v1     40695365 19 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e cebCap1.NW_016107610v1       669844 21 -   2910086 I
e otoGar3.GL873530             687684 1 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e saiBol1.JH378108           50526574 21 +  54856640 I

a score=102919.000000
s hg38.chr15_KI270850v1_alt    388417 31 +    430880 ataggtactagtactaGAGGATAATTAAAAT
s panTro5.chr15              63541476 31 +  83230942 ATAGGTACTAGTACTAGAGGATAATTAAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80498412 31 +  99763055 ATAGGTACTAGTACTAGAGGATAATTAAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        98671 31 -   1709092 ATAGGTACTAGTACTAGAGGATAATTAAAAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17258130 31 - 121039945 ATCGGTACTAGTACTAGAGGATAATTAAAAC
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22296870 31 + 158406734 ATAGGTACTAGTACTAGAGGAGAATTGAAGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50526595 31 +  54856640 ATAAGTACTAGTACTAGAGGAGAATTGAAAT
i saiBol1.JH378108          I 21 C 0
s cebCap1.NW_016107610v1       669865 31 -   2910086 GTAGGTACTAGTGCTAGAGGAGAATTGAAAT
i cebCap1.NW_016107610v1    I 21 I 11
s aotNan1.NW_018505940v1     40695384 28 +  42888418 ATAGGTAGTAGTACCA---GAGAATTGAAAT
i aotNan1.NW_018505940v1    I 19 I 11
s otoGar3.GL873530             687685 30 -  36342412 TTAGATACCAGTACTAGACAAGAATTGAAA-
i otoGar3.GL873530          I 1 C 0
s canFam3.chr3               54453980 31 +  91889043 ATAGGTACCAGTTCCTTGAGAAGGTTAAAAC
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=14395.000000
s hg38.chr15_KI270850v1_alt    388448 20 +    430880 ACTGAAATATTGAAATACAA
s panTro5.chr15              63541507 20 +  83230942 ATTGAAATATTGAAATACAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80498443 20 +  99763055 ATTGAAATATTGAAATACAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        98702 20 -   1709092 ATTGAAATATTGAAATACAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17258161 20 - 121039945 ATTGAAATACTGAAATACAA
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22296901 11 + 158406734 -----AAAGCTTAAAT----
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50526626 11 +  54856640 -----AAAGCTTAAAT----
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873530             687715 14 -  36342412 ---AGAAAGTTAAAGTA---
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54454011 11 +  91889043 -----AAAGTTTAAAT----
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018505940v1     40695412 11 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e cebCap1.NW_016107610v1       669896 11 -   2910086 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=500254.000000
s hg38.chr15_KI270850v1_alt    388468 144 +    430880 CAGAATTTTAAACTA-TT-TGAGTTCCACCTCCAATAAAGGCTGGCAAAG-TTATTCAAACTAACCTTCTTCCT----G---AAAAAAAATGCTAAC--AATAAAGAGGGACA-TCATCTTAAAAGCATCTGAAATCTTACAGGAT-----------------------------------------------------------------------------------------------------AGAACTACTAG
s panTro5.chr15              63541527 144 +  83230942 CAGAATTTTAAACTA-TT-TGAGTTCCACCTCCAATAAAGGCTGGCAAAG-TTATTCAAACTAACCTTCTTCCT----G---AAAAAAAATGCTAAC--AATAAAGAGGGACA-TCATCTTAAAAGCATCTGCAATCTTACAGGAT-----------------------------------------------------------------------------------------------------AGAACTACTAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80498463 144 +  99763055 CAGAATTTTAAACTA-TT-TGAGTTCCACCTCCAATAAAGGCTGGCAAAG-TTATTCAAACTAACCTTCTTCCT----G---AAAAAAAATGCTAAC--AATAAAGAGGGACA-TCATCTTAAAAGCATCTGAAATCTTACAGGAT-----------------------------------------------------------------------------------------------------AGAACTACTAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        98722 144 -   1709092 CAGAATTTTAAACTA-TT-TGAGTTCCACCTCCAATAAAGGCTGGCAAAG-TTATTCAAACTAACCTTCTTCCT----G---AAAAAAAATGCTAAC--AATAAAGAGGGACA-TCATCTTAAAACCATCTGAAATCTTACAGGAT-----------------------------------------------------------------------------------------------------ACAACTACTAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17258181 148 - 121039945 CAGAATTTTAAACTATTT-TGAGTTCCACCTCCAATAAAGGCTAGCAAAG-TTATTCAAACTAACCTTCTTCCT----GAAAAAAAAAAATGCTAAC--AATAAAGAGGGACA-TCATCTTAAAAGCATCTGAAATCTTACAGGAT-----------------------------------------------------------------------------------------------------AGAACTACTAG
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22296912 151 + 158406734 CAGAATTTTAAACTA-TT-TGAGttccatttccaataaaggctggccaag-ttattcaaactaaccttctttctaaaaaaaaaaaaaaaatgctaac--aataaatagggaca-tcatcttaaaagcatctgaaaTCCTACATAAT-----------------------------------------------------------------------------------------------------AGAACTACTAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50526637 147 +  54856640 CAGAATTTTAAACTA-TT-TGAGTTCCATTTCCAATAAAGGCTGGCAAAG-TTATTCAAACTAACCTTCTTTCT----GGAAAAAAAAAATGCTAAC--AATAAATAGGGACA-TCATCTTAAAAGCACCTGAAATCTTACAGAAC-----------------------------------------------------------------------------------------------------AGAACTGCTAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       669907 148 -   2910086 CAGAATTTTAAACCA-TT-TGAGTTCCATTTCCAATAAAGGCTGGCAAAG-GTATTCAAACTAACCTTCTTTCT---GGAAAAAAAAAAATGCTACC--AATAAATAGGGACA-TCATCTTAAAAGCATCTGAAATCTTACAGAAT-----------------------------------------------------------------------------------------------------AGAACTACTAA
i cebCap1.NW_016107610v1    I 11 C 0
s aotNan1.NW_018505940v1     40695423 147 +  42888418 CAGAATTTTAAACTA-TT-TGAGTTCCATTTCCAATAAAGGCTGGCAAAG-TTATTCAAACTAACCTTCTTTCT----GAAAAAAAAAAATGCTAAC--AATAAATAGGGACA-TCATCTTAAAAGCATCTGAAATCTTACAGAAT-----------------------------------------------------------------------------------------------------AGAACTACTAA
i aotNan1.NW_018505940v1    I 11 I 313
s otoGar3.GL873530             687729 245 -  36342412 --GAATTTGAAACTA-TTCCTACTTTCATTTCCAGTAATGGCTAGCAAGG-TTTCTCAGACTAATTTTCTTCCT---------AAAAAAATGCTGACTTAATAAAAAAGACCAGTCACATTAAAAGCACCTAAGATCTTAaacagtgattcacaacctgtgggtctcaaccttcctaatgccatatacattctgtattaaagggccacggcattaggaaggttgagaaccacGGTCTTATAAGATAGAGAACCACCAG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54454022 147 +  91889043 CAAAATTTAAAACCA-TT-CAAGTTTCATTTCCAGTTGTGGCTGACAAGGTTTATTCAGACTAA---TCTTCCA----GAAAATAAAAAATAC---C--GCTTAAGACAGACA-TTATCTCCACAGCATCTGAGAGCACAGAGAAC------------------------------------------------------------------------------------------------AGTAGAGAACTACGAG
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=42954.000000
s hg38.chr15_KI270850v1_alt    388612 12 +    430880 TCCAAATTCTTT
s panTro5.chr15              63541671 12 +  83230942 TCCAAATTCTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80498607 12 +  99763055 TCCAAATTCTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        98866 12 -   1709092 TCCAAATTCTGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17258329 12 - 121039945 TCCAAATTCTTT
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22297063 12 + 158406734 TCCAAATTCTTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50526784 12 +  54856640 TCCAAAttcttt
i saiBol1.JH378108          C 0 I 614
s cebCap1.NW_016107610v1       670055 12 -   2910086 TCCAAATTCTTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40695883 12 +  42888418 TCCAAATTCTTT
i aotNan1.NW_018505940v1    I 313 C 0
s otoGar3.GL873530             687974 12 -  36342412 TCCAAATTCTTA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54454169  8 +  91889043 -TTTAGTTC---
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=1541679.000000
s hg38.chr15_KI270850v1_alt    388624 457 +    430880 AAAACAAAAA-CAAACAACAACAAGC--------------------GGAAACCAGGAAACCCTCTCCCCACCTCAAAAAAGCAAAATACCAGAACACAAAAGTCATTTTTAGTCTATGATGGAATCTCTTTGCCCATCTCAGCAAAG-------ATGGTTCTATGGCCCCAAGAAGCAAAGGAAAAGAAGTCAATGTTCAAAACATACCCAAGAAGGGAAATGAATAGGATAGTCTATCCAC-ATTAAGCTG--------GGA-CCCC---------CCAGAGTACCTAC-AACCAGAATAAAACCAGGGCCC-AAAATCTCCTGCTGTGATCTctaaaatttaaaacctcaaagatggagtttaacagccaaatgaggtacaataggggaaaagcagtgaactagaatatagaaccaaaatgtatacaatacataagggagacaca-aaaaagtagaaaatatcaaagacacaaaag------atagaatgagaaagtagaataaatattta
s panTro5.chr15              63541683 457 +  83230942 aaaacaaaaa-caaacaacaacaagc--------------------agaaaccaggaaacCCTCTCCCCACCTCAAAAAAGCACAATACCAGAACACAAAAGTCATTTTTAGTCTATGATGGAATCTCTTTGCCCATCTCAGCAAAG-------ACGGTTTTATGGCCCCAAGAAGCAAAGGAAAAGAAGTCAAGGTTCAAAACATACCCAAGAAGGGAAATGAATAGGACAGTCTATCCAC-ATTAAGCTG--------GGA-CCCC---------CCAGAGTACCTAC-AACCAGAATAAAACCAGGGCCC-AAAATCTCCTGCTGTGATCTctaaaatttaaaacctcaaagatggagtttaacagccaaatgaggtacaataggggaaaagcagtgaactagaatatagaaccaaaatgtatacaatacgtaagggagacaca-aaaaagtagaaaataccaaagacacaaaag------atagaatgagaaagtagaataaatattta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80498619 457 +  99763055 aaaacaaaaa-caaacaacaacaagc--------------------agaaaccaggaaacCCTCTCCCCACCTCAAAAAAGCACAATACCAGAACACAAAAGTCATTTTTAGTCTATGATGGAATCTCTTTGCCCATCTCAGCAAAG-------ACGGTTTTATGGCCCCAAGAAGCAAAGGAAAAGAAGTCAAGGTTCAAAACATACCCAAGAAGGGAAATGAATAGGACAGTCTATCCAC-ATTAAGCTG--------GGA-CCCC---------CCAGAGTACCTAC-AATCAGAATAAAACCAGGGCCC-AAAATCTCCTGCTGTGATCTctaaaatttaaaacctcaaagatggagtttaacagccaaatgaggtacaataggggaaaagcagtgaactagaatatagaaccaaaatgtatacaatacgtaagggagacaca-aaaaagtagaaaataccaaagacacaaaag------agagaatgagaaagtagaataaatattta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        98878 457 -   1709092 AAAACAAAAA-CAAACAACAACAAGC--------------------AGAAACCAGGAAACCCTCTCCCCACCTCAAAAAAGCACAATACCAGAACACAAAAGTCATTTTTAGTCTGTGATGGAATCTCTTTGCCCATCTCAGCAAAG-------ACGGTTCTATGGCCCCAAGAAGCAAAGGAAAAGAAGTCAAGGTTCAAAACATACCCAAGAAGGGAAATGAATAGGACAGTCTATCCAC-ATTAAGCTT--------GGA-CCCC---------CCAGAGTACCTAC-AACCAGAATAAAACCAGGGCCC-AAAATCTCCTGCTGTGatctctaaaatttaaaacctcaaagatggagtttaacagccaaatgaggtgcaataggggaaaagcagtgaactagaatatagaaccaaaatgtatacaatacgtacgggagacaca-aaaaagtagaaaataccaaagactcaaaag------atagaatgagaaagtagaattaatattta
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17258341 458 - 121039945 aaaacaaaaa-caaacaacaacaact--------------------agaaaccaggaaacCCTCTCCCCATCTCAAAAAAGCACAATACCAGAACACAAAAGTCATTTTTAGTCCATGATGGAATCTCTTTGCCCATCTCAGCAAAG-------ATGGTTCTATGGCCCTAAGAAGCAAAGGAAAATAAGTCAAGGTTCAAAACATACCCAAGAAGGGAACTGAATAGGACAGTCTATCCAC-ATTAAGCTG--------GGACCCCC---------CCAGAGTACCTAC-AACCAAAATAAAACCGGGGCCC-AAAATCTCCTGCTGTGATCTctaaaatttaaaacctcaaagatggagtttaacagccaaatgaggtaaaataggggaaaagcagtgaactagaatatagaaccaaaatgtatacaatacgtaaaggagacata-aaaaagtagaaaataccaaagatgcaaaag------atagaacgagaaagtagaataaatattta
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22297075 460 + 158406734 ------AAAA-CAAAC----------------------AATTAAAAAAAAACCAGGCAAGCACTCCCC-ACCTCAAAAAAGCACAATACCAGAACACCAAAGCCATTTTTAGTCTATGATGGAATCTCTTTACCCATCTCAGCAAAGTTTGGTTTTGGTTCAATGGTCCCAAGAAGCAAAGGAAAAGAAGTCAAGGTTCAAAACACACCCAAGAAGGGAATTTAATAAGACAGCCTATCCAC-ATTAAGCCG--------GGA-CTCCC----CCCGCCAAGTTACCTAC-AACCAGAATAAAACCAGGGCCC-CAAATCTCCCGCCCTGATCTctaaaatttaaaacctcaaagatggagtttaacaactaaatgatgtacaataggggaaaagcagcgaactagaatacagaaccaaaatttatacaataagtaagggagacaca-aaaaagtagagaataccaaagagacaatgg------atagaatgacaaagtagaataaatattta
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50527410 476 +  54856640 aaaacaaaaa-caaacaacaacaaca--------aacaaacaaacaaaaaaacaggcaagcaCTCCCCTACCTCAAAAAAGCACAATACCAGAACACCAAAGTCATTTTTAGTCTATGATGGAATCTCTTTGCCCACCTCAGCGAAGTTGGGTTTTGTTTCTATAGTCCCAAGAGGCAAAGGAAAAGAAGTCAAGGTTCAAAACACATTCAAGAAGGGAATTTAATAAGACAGCCTATCCAC-ATTAAGCTG--------GGA-C-CCC----CCCACCAAGTTACCTAC-AACCAGAATAAAACCAGGGCCC-CAAATCTCCTGCCCTGATCTctaaaatttaaaacctcaaagatggagtttaacaactaaatgatgtacaatagggcaaaagcagtaaactagaatacagaatgaaaatttatacaa----taagggagacaca-aaaaagtagagaataccaaagagaccatgg------atagaatgacaaagtagaataaatattta
i saiBol1.JH378108          I 614 C 0
s cebCap1.NW_016107610v1       670067 488 -   2910086 AAAACAAAAACCAaacaacaacaacaacaacaacaacaacaaAAAAAAAAAACAGGCAAGCACTCCCCTGTCTCAAAAAAGCACAATACCAGAACACCAAAGTCATTTTTAGTCTATGATGGAATCTCTTTTCCCATCTCAGCAAAGTTGGGTTTTGGTTCTATGGTACCAAGAGGCAAAGGAAAAGAAGTCAAGGTTCAAAACACACCCAAGAAGGGAATTTAATAAGACAGCCTATCCAC-ATTAAGCTG--------GGA-CTCCC----CC--CTAACTTACCTAC-AACCAGAATAAAACCAGGGTCC-CAAATCTCCTGCCCTGATCTctaaaatttaaagcctcaaagacggagtttaacaactaaatgatgtacaatagaggaaaagcagtgaactagaatacagaaccacaatttatacaataagtaacggagacaca-aaaaagtagagaataccaaagagacaatgg------atagaatggcaaagtagaataaatattta
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40695895 470 +  42888418 AAaacaaaaa-caaacaacaacaaca-------------------aaaaaacCAGGCAAGCACTCCCCTACCTCTAAAAAGCACAATATCAGAACACCAAAGTCATTTTTAGTCTATGATGGAATCTCTTTGCCCATCTCAGCAAAGTTGGGTTTTGGTTCTATGGTCCCAAGAAGCAAAGGAAAAGAAGTCAAGGTTCAAAACACACCCAAGAAGGGAATTTAATAAGACAGCCTATCCAC-ATTAAGCTG--------GGA-CCCCC----CCCGCCAAGTTACCTAT-AACCAGAATAAAACCAGGGCCC-CAAATCTCCTGCCCTGATCTctaaaatttaaaacctcaaagatggagtttaacaactaaatgatgtacaataggggaaaagtagtgaactagaatacagaaccaaaatttatacaataagtaagggagacaca-aaaaagtagagaatatcaaagagacaatgg------atagtatgacaaagtagaataaatattta
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             687986 453 -  36342412 -----GGAAG-AAAAGAGAAAAAAGC--------------------AGGAACCCAGAGGG----------------AAAAGCACAATACCAGAGCACGAAAGTCA-CTTTAACCCGTGAAGCTATCTCTCTGCCCATCTCAGCAAAGTTGAACAGTGGTTCTATAGCTCCAAGAGGCAAGGGAAAAGAAGTTAAGATTCAAAACATGCTCGAGTACAGACTCTAATAGGACACTATCTCTATAATTAAGCTGCACACCAAGGG-TACC---------TCAGTATAAAAATGAACCAGAATAAAACAAAGGCCCTAAAACCTCCTGCCCTGatatctaaaatttaaaacctcaaagatagagtttaacagtcaaatgaagaacattaggggaaaagcagtgagctacaatacaggaccaaagcttatccattacataggagagagaca-caaaagtagaaaatgccaaagaaatgaata------atagaatgagaaagtagaataaatgttta
i otoGar3.GL873530          C 0 I 255
s canFam3.chr3               54454177 437 +  91889043 AGATTGAAAG-C----------------------------------AGAAACCCAGAAG----------------AGAAAGCA-AACACCAGAGCACCCAAGTCA--CTGACCCTCTGATGGCATCTGC---CCCTGCTCAGCAATATGGGGGTTTGGGTCTAAGACCTGAAAAAACAAAGGGAAAGAGGTTAAGATTCATGGCCCTGCCCACCAACAAGTCTAACAGGACACCCTGTCCTC---TAGGCTA--------GGA-CCCCAAGGGCACTTCAGGGTAAAAATGAACCAGCATGAAGCCAGGGACC-AAAAGCTCTCAGCAAAATa-ctggaagtgagaaattcttaggtggagtttaacagcc-aatgaggcacagcacaggacaagaagtgaactagaacactgggccaaaatgtccaaaa----caaaggaaagatagaaaaaatagaagataccaaaaagaagatgagagaccaaggactgaataagtggagtaaatgttta
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=663149.000000
s hg38.chr15_KI270850v1_alt    389081 195 +    430880 attac------------------------------------agagtcccaaaagaagagaaagaaaaatgaggcacaggaaatatatgaggagataatggttgtaaattgagtaatgaaagataccagtctatacat-----------------------------acaagaaacccaagaactcccaaggaag-aaaa-----aagataaccatatttaaactaagagtgaaacatcaga--aagcaaagggataattaaaacaaac
s panTro5.chr15              63542140 195 +  83230942 attac------------------------------------agagtcccaaaagaagagaaagaaaaatgagacacaggaaatatatgaggagataatggttgtaaattgagtaatgaaagataccagtctatacat-----------------------------acaagaaacccaagaactcccaaggaag-aaaa-----aagataaccatatttaaactaagagtgaaacatcaga--aagcaaagggataattaaaacaaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80499076 195 +  99763055 attac------------------------------------agagtcccaaaagaagagaaagaaaaatgaggcacaggaaatatatgaggagataatggttgtaaattgagtaatgaaagataccagtctatacat-----------------------------acaagaaacccaagaactcccaaggaag-aaaa-----aagataaccatatttaaactaagagtgaaacatcaga--aagcaaagggataattaaaacaaac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        99335 192 -   1709092 attac------------------------------------agagtccc-aaagaagagaaagaaaaatcaggca-aggaaagatatgaggagataatggttgtaaattgagtaatgaaagataccagtctatacat-----------------------------acaagaaa-ccaaaaactcccaaggaag-aaaa-----aagataaccatatttaaactaagagtgaaacatcaga--aagcaaagggataattaaaacaaac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17258799 196 - 121039945 attac------------------------------------agagtcccaaaagaagagaaagaaaaataaggcacaggaaatatatgaagagataatggttgtaaattgagtaatgaaagacaccagtctatacat-----------------------------acaagaaacccaagaactcccaaggaagaaaaa-----aagataaccatatttaaactaagagtgaaatatcaca--aggcaaagggataattaaaacaaac
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22297535 200 + 158406734 actac------------------------------------agactcccagaagaggagaaagaaaaatgaggcacaggaaatatatgagaa-ataatggttgtaaattgagtaatcaaagataccagtctgtacac-----------------------------ataagaaacccaaaaactcccaaggaagaaaaaataaaaagataaccatatttaaactaagagtgaaacatcaga--aaacaaaggaataattaaaacaaac
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50527886 194 +  54856640 actac------------------------------------agactcccagaagagg----agaaaaatgaggcacaggaaatatatgagaagataatggtggtaaagtgagtaatcaaagataccagtctgtacac-----------------------------ataagaaatctaaaaa--cccaaggaag-aaaaataaaaagataaccatatttaaactaagagtgaaacatcaga--aaacaaagggataattaaaacaaac
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       670555 199 -   2910086 actac------------------------------------agact-ccagaagaggagaaagaaaaatgaggcagaggaaatatatgagaagataatggttgtaaattgagtaatcaaagataccagtctgtatac-----------------------------ataagaaacacaaaaactcccaaggaag-aaaaataataagacaactatatttaaactaagagtgaaacatcaga--aaacaaggagataattaaaacaaac
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40696365 200 +  42888418 actac------------------------------------agactcccagaagaggagaaagaaaaatgaagcacaggaaatatatgagaagataatggttgtaaattgagtaatcaaagataccagtctgtacac-----------------------------ataagacacccaaaaactcccaaggaag-aaaaataaaaagataaccatatttaaagtaagagtgaaacatcaga--aaacaaagggataattaaaacaaac
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             688694 212 -  36342412 attacaggtgtgagccactgcacccagcctaagaaatgtttagggtcccagaaaaagag--agaaaaacgaggcagaggaaacagatgacgagataatggttgtaagcttagtactggaagacaccaatctgt--at-----------------------------gcaagaaactccagaacttccaaacaag-atac----------------atttagactaacagtgcaacagcaga--aaaca----gataattaaaACAAAc
i otoGar3.GL873530          I 255 I 252
s canFam3.chr3               54454614 220 +  91889043 attgc------------------------------------agt------aacaaggaaagagaaaaatgaagcagaggacataagtgaagagacaatgactg--aactaagcagggaaa---acccatccatccataaagaagcccaagaactaaaaaacaaacaaaaagaagcccaagaactcacaagcaag-aaaaataaagatattatcgtatgcagactcagagtgaaacagcagaagagacatgggtacaataaaaacaaac
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=272200.000000
s hg38.chr15_KI270850v1_alt    389276  95 +    430880 aaggaacaaaagagaga----aaaaggtttcaaaggagagtgaccgactttt---gaaaaccattgaagcctgaacatgttcagtatatggagagtgaaatg
s panTro5.chr15              63542335  95 +  83230942 aaggaacaaaagagaga----aaaaggtttcaaaagagagtgaccgactttt---gaaaaccactgaagcctgaacatgttcagtatatggagagtgaaatg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80499271  95 +  99763055 aaggaacaaaagagaga----aaaaggtttcaaaagagagtgaccgactttt---gaaaaccactgaagcctgaacatgttcagtatatggagagtgaaatg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        99527  95 -   1709092 aaggaacaaaagagaga----aaaaggtttcaaaagagagtgactgactttt---gaaaaccattgaagcctgaacatgttcagtatatggagagtgaaatg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17258995  92 - 121039945 aaggaacaaaagagaga----aaaAGGTTTCAAAAGAGAGTGACTGAC--TT---GAAAACCACTGAAGCCTG-ACATGTTCAGTATATGGAGAGTGAAATG
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22297735  93 + 158406734 aaggaacaaaacagaga----aaaaggtttcaaaagaa--tgactgactttt---caaaaccactgaggcctgaacatgttcagtatataaagagtgaaatg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50528080  91 +  54856640 aaggaacaaaacagaga----aaaaggttgcaaaagaa--tgactgactttt---caaaaccactgaggcctgaacatgttcagtatat--agagtgaaatg
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       670754  93 -   2910086 aaggaaaaaaacagaga----aaacggtttcaaaagaa--tgactgactttt---caaaaccacggaggccTAAACATGTTCAGTATATAAAGAGTGAAATg
i cebCap1.NW_016107610v1    C 0 I 11173
s aotNan1.NW_018505940v1     40696565  89 +  42888418 aaggaacaaaacagaga----aaaaggtttcaaaagaa------tgactttt---caaaaccactgaggcctgaacatgttcagtatataaagagtgaaatg
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54454834 100 +  91889043 --tgcacaagagacagataacaagaaatttcaaaaaagaacaacggatttctcaacaaaacctttaacacctaaagataatgaacctgaatggaatggaatg
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e otoGar3.GL873530             688906 252 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=393204.000000
s hg38.chr15_KI270850v1_alt    389371 170 +    430880 at-aaatgccaatcaagaattgtgtaaccaccaaatacatcctaagaaatgaacgtgaga--aagagattttcaaggaaga-----taaagatca-----------------------------------------ttcactgccagcagactcacaataaaaatattcatc---------tttaacattaaatatgctccttgagcagaaggaaagtgaacccacat
s panTro5.chr15              63542430 170 +  83230942 at-aaatgccaatcaagaattgtgtaaccaccaaatacatcctaagaaatgaacgtgaga--aagagattttcaaggaaga-----taaagatca-----------------------------------------ttcactgccagcagactcacaataaaaatattcatc---------tttaacattaaatatgctccttgagcagaaggaaagtgaacccacat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80499366 170 +  99763055 at-aaatgccaatcaagaattgtgtaaccaccaaatacatcctaagaaatgaacgtgaga--aagagattttcaaggaaga-----taaagatca-----------------------------------------ttcactgccagcagactcacaataaaaatattcatc---------tttaacattaaatatgctccttgagcagaaggaaagtgaacccacat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        99622 170 -   1709092 at-aaatgccaatcaagaattgtgtaaccaccaaacacatcctaagaaatgaacgtgaga--aagacattttcaaggaaga-----taaagatca-----------------------------------------ttcactgccagcagactcacaataaaaatattcatc---------tttaacattaaatatgctccttgagcagaaggaaagtgaacccacat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17259087 167 - 121039945 ATAaaatgccaatcaagaattgtgtaaccaccaaatacatcctaagaaatgaacatg------agagattttcaaggaaga-----taaagatca-----------------------------------------ttcactgccagcagactcacaataaaaatattcatc---------tttaacattaaatatgctccttgagcagaaggaaagtgaacccacat
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22297828 173 + 158406734 at-aaatgccaattaagaaccgcataaccaggaaatatatcctaagaaacgaacatgaaa--aagatattttcaaggaaga-----taaagatca-----------------------------------------ctcactcccagcagactcaaaataaaaatgttcatctttaacatttttaacattaaacatgctccttgagc------aaagttaacccacat
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50528171 164 +  54856640 at-aaatgccaattaagaactgcataaccaggaaatagatcctaagaaacaaacatgaaa--aatatattttcaagaaaga-----taaagctca-----------------------------------------ctcactcccagcagactcaaaataaaaatgttcacc---------tttaacactaaatatgctccttgagc------acagttaacccacat
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40696654 162 +  42888418 at-aaatgccaattaagaactgcataaccaggaaatacatcctaagaaac--acgtgaaa--aagatattttcaaggaaga-----taaagatca-----------------------------------------ctcactcccagcagactcaaaataaaaatgttcatc---------tttaacattaaatatactccttgagc------aaagttaacccacat
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54454934 208 +  91889043 at-agatagcaaccaagaatcctataaccagtaagtatgttctaagaagtcaaagtgaaatcaagacattttcatggaaaaatttttaaaattcattgccagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatttcattgccagtagactcacactgaa-------------------gagaacactgaagatgttcctctggtagaaggaaagtgaacccatgt
i canFam3.chr3              C 0 I 6
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             688906 252 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=38016.000000
s hg38.chr15_KI270850v1_alt    389541 15 +    430880 ggaag---agaa----------------attcag
s panTro5.chr15              63542600 18 +  83230942 ggaagaacagaa----------------attcag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80499536 18 +  99763055 ggaagaacagaa----------------attcag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        99792 18 -   1709092 ggaagaacagaa----------------attcag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17259254 18 - 121039945 ggaaacaaagaa----------------attcag
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22298001 17 + 158406734 -gaagcacagaa----------------attcag
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50528335 18 +  54856640 ggaagcacaaaa----------------attcag
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40696816 18 +  42888418 ggaagcacagaa----------------attcag
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             689158 15 -  36342412 ggaaa---aAAA----------------ATTCAC
i otoGar3.GL873530          I 252 C 0
s canFam3.chr3               54455148 31 +  91889043 ---agaaaagaatagggcagcccgggtgactcag
i canFam3.chr3              I 6 I 154
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=910770.000000
s hg38.chr15_KI270850v1_alt    389556 351 +    430880 ag-----------aaaaaaaaaacaatga-aaagaggacacatctaagtctaagtaaacaatgactatataagatactttcttctggggttc--aaatatac---acacaattgaaatgtatagcagcaacagcacaaaagaagtggggacaggataac--aag--ttctgtaaggtccttgcattttctaggacgtgatgaaagcactaatttcttagacgctagtaagtc----------------aatgataacatgttgt-----aatccct------aggtgtagccacaaaaaga-----tcagtaaatata------------------------tg-tttgcccaagaggccatggaagaaagaaaaaggaataGAACGTGAAGAACAA--AGAAGACTCAGTAAAG----ATGATAGGTTTAAGCA
s panTro5.chr15              63542618 357 +  83230942 ag-----aaaaaaaaaaaaaaaacaatga-aaagaggacacatctaagtctaagtaaataatgactatataagatactttcttctggggttc--aaatatac---acacaattgaaatgtatagtagcaacagcacaaaagaagtggggacaggataac--aag--ttctgtaaggtccttgcattttctaggatgtgatgaaagcactaatttcttagacgctagtaagtc----------------aatgataacatgttgt-----aatccct------aggtgtagccacaaaaaga-----tcagtaaatata------------------------tg-tttgcccaagaggccatggaagaaagaaaaaggaataGAACGTGAAGAACAA--AGAAGACTCAGTAAAG----ATGATAGGTTTAAGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80499554 353 +  99763055 ag---------aaaaaaaaaaaacaatga-aaagaggacacatctaagtctaagtaaataatgactatataagatactttcttctggggttc--aaatatac---acacaattgaaatgtatagtagcaacagcacaaaagaagtggggacaggataac--aag--ttctgtaaggtccttgcattttctaggatgtgatgaaagcactaatttcttagacgctagtaagtc----------------aatgataacatgttgt-----aatccct------aggtgtagccacaaaaaga-----tcagtaaatata------------------------tg-tttgcccaagaggccatggaagaaagaaaaaggaataGAACGTGAAGAACAA--AGAAGACTCAGTAAAG----ATGATAGGTTTAAGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1        99810 349 -   1709092 ag--------aaaaaaaaaaaaac----a-aaagaggacacatctaagtctaagtaaataatgactatataagatactttcttctggggttc--aaatatac---acacaattgaaatgtatagtagcaacagcacaaaagaagtggggacaggataac--aag--ttctgtaaggtccttgcatttt-taggacatgatgaaagcactaatttcttagatgctagtaagtc----------------aatgataacgtgttgt-----aatccct------aggtgtagccacaaaaaga-----tcagtaaatata------------------------tg-tttgcccaagaggccatggaagaaagaaaaaggaataGAACATGAAGAACAA--AGAAGACTCAGTAAAG----ATGATAGGTTTAAGCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17259272 354 - 121039945 ag-------aaaaaaaaaaaaaacaatga-aaagaggacacatctaagtctaagtaaataatgactatataagatactttcttctggggttc--aaatatat---acacagttgaaatgtacagtagcaacagcacaaaagaagtgggt-taggataac--aag--ttctataaggttcttgcattttctaggacgtgatgaaaggactaatttcttagatgctagtaagtc----------------aatgataacatgctgt-----aatccct------agatgtagccacaaaaaga-----tcagtaaatata------------------------tg-tttgcccaagaggccgtggaggaaagaaaaaggaataGAAGATGAAGAACAA--AGAAGACTCAGTAAAG----ATGATAGGTTTAAGCA
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22298018 370 + 158406734 ggaaaaaaaaaaaaaaaaaacaacaacaa-tgaaaagacgcatctaagtctaagtaaatactgactatgtaagatgctttcttctgggattc--aaatatat---acacaattaaaatgtatagtagcaacagcacaaaagcagtggagacaggataac--aag--ttctataaggtccttgtattttctaaga-gtgatgaaagcactaatttgttagatgctagtaagtc----------------aatgataacgtgttat-----aatgctc------aga-gtagccacaaaaaga-----tcagtaaaTATGT--------------TTACTCACTTG-TCAGACAAGGAGGCCATGGAAGAAAGAAAAAGGAATAGAACATGAAGAACAA--AGAAGACTCAGTAAAG----ATGACAGGTTTGAGCA
i calJac3.chr6              C 0 I 6
s saiBol1.JH378108           50528353 357 +  54856640 g------------aaaaaaacaacaatga-aaagaagacacaactaagtctaagtaaatactgactatgtaagatgctttgttctgggattc--aaatatat---acacaattaaaatgtatagtagcaacagcacaaaagcagtggagacagaataac--aag--ttctgcaaggtctttgtattttctatga-gtgatgaaagcactaatttgttagatgctagtaagtc----------------aatgataacctgttgt-----aatgcct------gga-gtagccacaaaaaga-----tcagtaaaTATGT--------------TTAC-CACTTG-TCAGACAAGGAGGCCATGGAAGAAAGAAAAAGGAATAGAACATGAATAACAA--AGAAGACTCAGTAAAG----ATGATAGGTTTGAGCA
i saiBol1.JH378108          C 0 I 6
s aotNan1.NW_018505940v1     40696834 364 +  42888418 a------agaaaaaaaaaaataacaatga-aaagaagacacgtctaagtctaagtaaatactgactatgtaagatgctttcttctgggattc--aaatatat---atacaattaaaatgtatagtagcaacagcacaaaagcagtggagacaagataac--aag--ttctacaaggtccttgtattttctagga-gtgatgaaagcactaatttgttagatgctagtaagtc----------------aatgataacatgctgt-----aatgcct------aga-gtagccacaaaaaga-----tcagtaaaTATGT--------------TTACTCACTTG-TCAGACCAGGAGGCCATGgaagaaagaaaaaggaatagaacatgaagaacaa--aGACGACTCAGTAAAG----ATGATAGGTTTGAGCA
i aotNan1.NW_018505940v1    C 0 I 22
s otoGar3.GL873530             689173 404 -  36342412 TT-------------AAAAAGAGGAATAA-AAAGAAGA------TATGtctaaataaataatggttatataaaataatttcttctagggttt--aaatataccatatacaattaaaacgcaaggtagcaatagcacaaaaacaatggga--agagtaactggaa--ttctataaggttctt-cacctgttaggaagtgatgagagcaccaatttgttagatgctaataatccctagggtagttacaaaaagaataaaataatgtttaaccatccatcagaaaaggagtgtgcaaataaagaatacttgattaaatattcaaggaaatacttgattaaatacttgattaaTCTAAAAGGGCAGAG----AAGAAAAAGAAACAGAATATGAAGGACAAAGAGAAGACCCAGTAAAGCGTACTGACAgatttaaaca
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54455333 329 +  91889043 -----------aaaaaaaaaaaagaataagaaaaaagacacatgtgagcaagactaaatactagttatataaaataattccttctggaatttaaaaatctat---acacaattaaaatgcatagtaacaatactacaaaagctgtgggaacagggtaat--cagacttgtacaagtttcttgcattttccaggaagGAATGAAAAAACTAG---GGTAGA--ATAGTGGAAC----------------AATGTTTAGACAACAG-----AA-----------GAAGGAAGTCTGAAGAAAG-----------AATACC------------------------TGATTAATCTAA--------------AAGACAGTCACATAGGACATGAAGGACAAAGAGAAGATCCAATAAAG----Ttgatagatttaaaca
i canFam3.chr3              I 154 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=4350.000000
s hg38.chr15_KI270850v1_alt    389907 6 +    430880 TAACAA-
s panTro5.chr15              63542975 6 +  83230942 TAACAA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80499907 6 +  99763055 TAACAA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       100159 6 -   1709092 TAACAA-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17259626 6 - 121039945 TAACAA-
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22298394 6 + 158406734 TAGTTA-
i calJac3.chr6              I 6 C 0
s saiBol1.JH378108           50528716 6 +  54856640 TAGTTA-
i saiBol1.JH378108          I 6 C 0
s otoGar3.GL873530             689577 6 -  36342412 tctcaa-
i otoGar3.GL873530          C 0 I 16079
s canFam3.chr3               54455662 7 +  91889043 taagcat
i canFam3.chr3              C 0 C 0
e aotNan1.NW_018505940v1     40697198 22 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=18743.000000
s hg38.chr15_KI270850v1_alt    389913 13 +    430880 AACGACATGGGTT
s panTro5.chr15              63542981 13 +  83230942 AACGACATGGGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80499913 13 +  99763055 AACGACATGGGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       100165 13 -   1709092 AATGACATGGGTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17259632 13 - 121039945 AACAACATGGTTT
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22298400 13 + 158406734 AACCACATGGTTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50528722 13 +  54856640 AACTATGTGGTTC
i saiBol1.JH378108          C 0 C 0
s canFam3.chr3               54455669 13 +  91889043 attgacaggtgtt
i canFam3.chr3              C 0 I 18935
e aotNan1.NW_018505940v1     40697198 22 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=-171.000000
s hg38.chr15_KI270850v1_alt    389926 5 +    430880 TGGAC
s panTro5.chr15              63542994 5 +  83230942 TGGAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80499926 5 +  99763055 TGGAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       100178 5 -   1709092 TGGAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17259645 5 - 121039945 TGGAG
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22298413 1 + 158406734 C----
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50528735 3 +  54856640 TGG--
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018505940v1     40697198 22 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=729951.000000
s hg38.chr15_KI270850v1_alt    389931 374 +    430880 AGGGGGAGGTTGGGTGGGTTCTTCATCCTCTCTCATCATAAACTACT-------TTTTTAAAGAACCCAGAACTTGTCtttttttttttttttt-tttttttggagacaaagttttgctctattgcccaggctagagtgcagtggcgcaacctccgctcactgcaacctccacctcccgagttcaagcaattctccaccctcagcctcccgagtagctgggattacaggtgcgtgccaccacaccgagctaatttttgtattttttagtagagacagggtttcgtcacgttggtcaggctggtctcgaactcctggcctcaggtgatccgcccccacctcgacctcccaaagtgctgggtttacaggcatgagtcaccgtgc
s panTro5.chr15              63542999 371 +  83230942 GGGGGGAGGTTGGGTGGGTTCTTCATCCTCTCTCATCATAAACTACT-------TTTTTAAAGAACCCAGAACTTGTC---ttttttttttttt-tttttttggagacaaagttttgctctattgcccaggctagagtgcagtggcgcaacctccgctcactgcaacctccacctcccgagttcaagcaattctccaccctcagcctcccgagtagctgggattacaggtgcgtgccaccacaccgagctaatttttatattttttagtagagacagggtttcgtcatgttggtcaggctggtctcgaactcctggcctcaggtgatccgcccccgcctccacctcccaaagtgctgggattccaggcatgagtcaccgtgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80499931 366 +  99763055 GGGGGGAGGTTGGGTGGGTTCTTCATCCTCTCTCATCATAAACTACT-------TTTTTAAAGAACCCAGAACTTGTC--------TGtttttt-tttttttggagacaaagttttgctctattgcccaggctagagtgcagtggcgcaacctccgctcactgcaacctccacctcccgagttcaagcaattctccaccctcagcctcccgagtagctgggattacaggtgcgtgccaccacaccgagctaatttttatattttttagtagagacagggtttcgtcatgttggtcaggctggtctcgaactcctggcctcaggtgatccgcccccgcctccacctcccaaagtgctgggattacaggcatgagtcaccgtgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       100183 346 -   1709092 GGGGGGAGGTTGGGTGGGTTCTTCATCCTCTCTCATCATAAACTACT-------TTTTTAAAGAACCCAGAACTTGTC--------------tt-tttttttggagacaaagttttgctctattgcccaggctagagtgcagtggcgcaacctccaccctc--------------cccgagttcaagcaattctccaccctcagcctcccgagtagctgggattacaggtgcgtgccaccacacggagctaatttttgtattttttagtagagacaggttttcgtcatgttggtcaggctggtctcaaactcctggcctcaggtgatccgcccccgcctcgacctcccaaagtgctgggattacaggcatgagtcaccatgc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17259650 347 - 121039945 CGGGGGAGGTTGGGTGGGTTCTTCATCCTCTC---TCATAAACCACT-------TTTTTAAAGAACCCAGAACTTGtt-----------------------tggagacaaagttttgctctattgcccaggctagagtgcagtggtgcaatctccgctcactgcaacctccacctcctgagttcaagcaattctcctccctcagcctcctgagtagctgggattacaggtgcgtgccaccacacccagctaatttttgtattttttagtagagacagggtttcgtcatgttggtcaggctggtctcgaactcctggcctcaggtgatcca--cccgcctggacctcccaaagtgctgggattacaggcatgagacaccgtgc
i nomLeu3.chr6              C 0 M 100
s calJac3.chr6               22298414 361 + 158406734 --AGGGGGGTTGGGTGGGTTCTTCAGCCTCTC---TCATAAACTACA-----TTTTTTTAAAGAAGCCAGAACTTGTC-------ACttttttt-tttttttgtagacagagttttgctctattgctcaagctggagtgcagtgatgtgatctcagctcactgcagtgtccacctcccaggttcaagcaattctcctccctcagcctactgagtggctggggttacaggcacgcatcataacatccaactcatttctgta-tctttagtagagatggggtttcgtcacattggtcaggctggtctcaaactcctaacctcaggtgatcca--cctgccttggcctcccaaagtgctgggattacaggtgtgagccacagtgc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50528738 369 +  54856640 GGGGGGGGGTTGGGTGGGTTCTTCATCCTCTC---TCATAAACTACATTTTTTTTTTTTTAAGAAGCCAGAACTTGTC-------ACtttttttctttttctttagacagagttttgctctattgtccaagctggagtgcagtggtacaatctcagctcactgcaatgtccacctcccaggttcaagcaattctcctccctcagcctcctaagtggctggggttgcaggcaggcaccgtaacatccagctaatttttgta-tttttagtagagatggggtttcgtcacattggtcaggctggtctgaaactcctgacctcaggtgatcca--cctgccttggcctcccaaagtgctgggattacaggtgtgagccacagtgc
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40697220 357 +  42888418 --AGGGGGGTTGGGTGGGTTCTTCATTCTCTC---TCATAAACTACA----TTTTTTTTTAAGAAGCTAGAACTTGTC-------ACCttt----tttttttttagac--agtttttctctattgcccaagctggagtgcagtggtgcaatctcagctcactgcaacgtccacctcccaggttcaagcaattctccttcctcagcctcctgagtggctggggttacaggcacgcaccataacagccagctaatttttgta-tttttagtagagatggggtttcgtcacattggtcgggctggtctcaaactcctgacctcaggtgatcca--cctgccttggcctcccaaagtgctgggattacaggtgtgagccacagtgc
i aotNan1.NW_018505940v1    I 22 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=39869.000000
s hg38.chr15_KI270850v1_alt    390305 27 +    430880 ttggGGGTACAACTTGTCACTTCTAAT
s panTro5.chr15              63543370 27 +  83230942 ttggGGGTACAACTTGTCACTTCTAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80500297 27 +  99763055 ttggGGGTACAACTTGTCACTTCTAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       100529 27 -   1709092 ctggGGGTACAACTTGTCACTTCTAAT
i gorGor5.CYUI01015556v1    C 0 C 0
s calJac3.chr6               22298775 27 + 158406734 ccggcTGTAGAACCTGTCACTTCTAAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50529107 27 +  54856640 ctggccGTAGAACTTGTCACTTCTAAT
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40697577 27 +  42888418 cccgccATAGAACTTGTCACTTCTAAT
i aotNan1.NW_018505940v1    C 0 I 41
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e nomLeu3.chr6               17259997 100 - 121039945 M

a score=11521.000000
s hg38.chr15_KI270850v1_alt    390332 11 +    430880 --GTGGTTTTCTT
s panTro5.chr15              63543397 11 +  83230942 --GTGGTTTTCTT
i panTro5.chr15             C 0 I 10
s panPan2.chr15              80500324 11 +  99763055 --GTGGTTTTCTT
i panPan2.chr15             C 0 I 7
s gorGor5.CYUI01015556v1       100556 11 -   1709092 --GTGGTTTTCTT
i gorGor5.CYUI01015556v1    C 0 I 10
s calJac3.chr6               22298802 13 + 158406734 ATGAGGTCTTTTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50529134 13 +  54856640 ATGAGGTCTTTTT
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018505940v1     40697604 41 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e nomLeu3.chr6               17259997 100 - 121039945 M

a score=203.000000
s hg38.chr15_KI270850v1_alt    390343  5 +    430880 -----AAAAA----------
s panTro5.chr15              63543418  5 +  83230942 -----aaaaa----------
i panTro5.chr15             I 10 C 0
s panPan2.chr15              80500342  5 +  99763055 -----aaaaa----------
i panPan2.chr15             I 7 C 0
s gorGor5.CYUI01015556v1       100577  5 -   1709092 -----aaaaa----------
i gorGor5.CYUI01015556v1    I 10 C 0
s nomLeu3.chr6               17260101  5 - 121039945 -----AAAAA----------
i nomLeu3.chr6              M 100 C 0
s calJac3.chr6               22298815 20 + 158406734 AATTTAAAAACAAAACAAAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50529147 14 +  54856640 AATTTAAAAAC------AAA
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018505940v1     40697604 41 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=534966.000000
s hg38.chr15_KI270850v1_alt    390348 242 +    430880 AAAAAAGATTTTTACActgggcacggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggtggatcacctgaggtcaggagtccaagaccagccaggccaacatgactaaaccccgtttctactaaaaatacaaaaattagccaggcatggtggcaggcgcctgtaatcccagctactcaggagtctgagacaggacaatcgcttgaaaccaggaggcggaggttgcagtga
s panTro5.chr15              63543423 239 +  83230942 aaaaaaGATTTTTACActgggcacggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggtgg---acctgaggtcaggagtccaagaccagccaggccaacatgactaaaccccgtttctactaaaaatacaaaaattagccaggcgtggtggcaggtgcctgtaaccccagctgctcaggagtctgagacaggacaatcgcttgaaaccaggaggcggaggttgcagtga
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80500347 239 +  99763055 aaaaaaGATTTTTACActgggcatggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggtgg---acctgaggtcaggagtccaagaccagccaggccaacatgactaaaccccgtttctactaaaaatacaaaaattagccaggcgtggtggcaggtgcctgtaaccccagctactcaggagtctgagacaggacaatcgcttgaaaccaggaggcggaggttgcagtga
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       100582 242 -   1709092 aaaaaaGATTTTTACgctgggcacagtggctcacgcctgtaatcccagcactttgggaggccaaggcgggtggatcacctgaggtcaggagtccaagaccagccaggccaacatgactaaaccccgtttctactaaaaatacaaaaattagccaggcgtggtggcaggcgcctgtaatcccagctactcaggagtctgagacaggacaatcgcttgaaaccaggaggtggaggttgcagtga
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17260106 242 - 121039945 AAAAAATTTTTTTACgctgggcacagtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcagatcacctgaggtcaggagtccgagaccagccaggccaacatgactaaaccctgtttctactaaaaatacaaaaattagccaggcgtggtggcaggcgcctgtaatcccagagactcaggaggctgagacaggacaatcgcttgaaatcaggaggcggaggttgcagtga
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22298835 242 + 158406734 AAAACAGATTTTTACgctgggcacagtggctcatgactgtaatctcagcactttgggagaccgagacaggtagattacctgaagtcaggagtcagagacaagcctagccaacatgatgaaaacccatctctactaaaaatacaaaaatcagctgggcatggtggcaggtacccgtagtcccagctactcaggaggctgagacaggagaatcacttgaacccaggaggcagaagttacagtga
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50529161 242 +  54856640 AATACAGATTTTTACAGTgggcacagtggctcatgcctgtaatctcagcactttgggagatcaagacaggtggatcacctgaagtcaggagtcagagaccagcctagccagcatgatgaaaacccatctctactaaaaatacaaaaattagctgggcatggtggcaggtacctgtagtccaagctactcaagaggctgagacaggaaaatcacttgaacccgagaggcagaagttgcagtga
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40697645 242 +  42888418 aaaacaGATTTTTATgctgggcacagtggctcatgcctgtaatctcagcactttgggagactgagacaggtggatcacctgaagtcaggagtcagagaccagcctagccaacatgatgaaaatccatctctactaaaaatacaaaaattagctgggcatggtggcaggtacctgtagtctcagctactcaggaggctgagacaggagaatcacttgaacccgggaggcagaagttgcagtga
i aotNan1.NW_018505940v1    I 41 I 11185
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=79973.000000
s hg38.chr15_KI270850v1_alt    390590 54 +    430880 cctgagatcacgccactgcactccagcctgggcaacagagtgacaccctgtccc
s panTro5.chr15              63543662 54 +  83230942 cctgagatcacgccactgcactccagcctgggcaacagagtgacaccctgtccc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80500586 54 +  99763055 cctgagatcacgccactgcactccagcctgggcaacagagtgacaccctgtccc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       100824 54 -   1709092 cctgagatcacgccattgcactccagcctgggcaacagagtgacaccctgttcc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17260348 54 - 121039945 cctgagatcgtgccactgcactccagcctgggcaacagagtgacaccctgtccc
i nomLeu3.chr6              C 0 C 0
s calJac3.chr6               22299077 53 + 158406734 gttgagattctg-aattgcactccagcctgggcgacagagcaagactctatctc
i calJac3.chr6              C 0 I 1245
s saiBol1.JH378108           50529403 53 +  54856640 accgagattccg-aattgcactccagcctgggcgacagagcaagactccatctc
i saiBol1.JH378108          C 0 I 7552
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=1016142.000000
s hg38.chr15_KI270850v1_alt    390644 1323 +    430880 CTCCACCCAACAAAAAAATTTTTTTTCTATTTCAGAACTATaaataaagatttgcagaatggattaaaaaccaatatcccaactatatgctgctttccagggtcatgtcttacaatataaggtcactgattgacaggttgaaaaacatgagaaaagatatgccattcaagcaccaaaaatgctgttgtaaccaaataggtatcaaagtaaactttaaggcaaaaacatgagaaagaaatgcatttcataagtatcgagagatcaatctacaaagaagatataattctaaaacttaataaaagcatacaaaaatcaataaagccaaacaacaaccctaaaaggagagataattgagat---aacgaaagctagagattttaacacatttctcttagtaattgatagaataagcatatattccccctgcaaaaaagaatatagaaaatctgaaacatcaaattagtaaatttgacctaacagacataaacagaacactgcatccaacatctgctcagtacactgtctttataagtatatctagaacatttaacaaagtagagcatatgttagactataaagcaagcctcaacaaatttgaagactaaaattatgttagaggatgttctatgaccatagtggaattaagataaaaattcataacaaaaagacaactagaaagtcccaaatacctgaaagctgtactacagacttcctcagggaccaacaagacatccaatggaaattagaaaatagtcaactaaatgataattaaaaagacttcacaactcataaaatgcacttaaatccatgctgagcgggaaatttatagtctttggtaatgtattaaaaaGATTAAAAACCATGGgccaagaatggtgactcatgcctgttatacaagtgctttgggaggctcagatgggaggatcacttgagcccaggagtttgaggttacagtaaggtatgattgtgccactaccttagtgacagggcaagatcctgcatccagaaaTATATGTATATAA-AATCggccgggcgcggtggctcacacctctaatcccagcactttgggaggccgaggcgaatggatcacttgaggtcaggagtttgaga-------------------------------ccagcctggccaacatggtg-aaaacccgtctctactaaaaa------------------------------------------------------------------------------cacaaaaatta----------gctgggcatggtggcaagtgcctgtaatcccagctactcaggaggctgagacagaagaatcgcttgaacccgggaggcggaggttacagtgagccgagatcatgcatggcactccagcctgggcgacagagc--aacccttcatctcaaaaactaaataaataaaa
s panTro5.chr15              63543716 1321 +  83230942 CTCCCCCCACAAAAAAATTTTTTTTTCTATTTCAGAACTATaaataaagatttgcagaatggattaaaaaccaatatcccaactatatgctgctttccagggtcatgtcttacaatataaggtcactgattgacaggttgaaaaacatgagaaaagatatgccattcaagcaccaaaaatgctgttgtaaccaaatgggtatcaaagtaaactttaaggcaaaaacatgagaaagaaatgtatttcataagtatcgagagatcaatctacaaagaagatataattctaaaacttaataaaagcatacaaaaatcaataaagccgaacaacaaccctaaaaggagagataattgagat---aatgaaagctagagattttaacacatttctcttagtaattgatagaataagcatatattccccctgcaaaaaagaatatagaaaatctgaaacatcaaattagtaaatttgacctaacagacataaacagaacactgcatgcaacatctgctcagtacactgtctttataagtatatctagaacatttaacaaagtagagcatatgttagactataaagcaagcctcaacaaatttgaagactaaaattatgttagaggatgttctatgaccatagtgaaattaagataaaaattcataacaaaaagacaactagaaagtcccaaatacctgaaagctgtact--agatttcctcagggaccaacaagacatccaatggaaattagaaaatagtcaactaaatgataattaaaaagacttcacaactcataaaatgcacttaaatccatgctgagcgggaaatttataggctttggtaatgtattaaaaagaTTAAAAACCATGGgccaagaatggtgactcatgcctgttatacaagtgctttgggaggctcagatgggaggatcacttgagcccaggagtttgaggttacagtgaggtatgattgtgccactaccttagtgacagggcaagatcctgcatccagaaaTATATGTATATAA-AATCggccgggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggcgaatggatcacttgaggtcaggagtttgaga-------------------------------ccagcctggccaacatggtg-aaaacccgtctctactaaaaa------------------------------------------------------------------------------tacaaaaatta----------gctgggcatggtggcaggtgcctgtaatcccagctactcaggaggctgagacagaagaatcgcttgaacccgggaggcggaggttacagtgagccgagatcatgcatggcactccagcctgggcgacagagc--aacccttcatctcaaaaactaaataaataaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80500640 1321 +  99763055 CTCCCCCCACACAAAAAATTTTTTTTCTATTTCAGAACTATaaataaagatttgcagaatggattaaaaaccaatatcccaactatatgctgctttccagggtcatgtcttataatataaggtcactgattgacaggttgaaaaacatgagagaagatatgccattcaagcaccaaaaatgctgttgtaaccaaatgggtatcaaagtaaactttaaggcaaaaacatgagaaagaaatgtatttcataagtatcgagagatcaatctacaaagaagatataattctaaaacttaataaaagcatacaaaaatcaataaagccgaacaacaaccctaaaaggagagataattgagat---aatgaaagctagagattttaacacatttctcttagtaattgatagaataagcatatattccccctgcaaaaaagaatatagaaaatctgaaacatcaaattagtaaatttgacctaacagacataaacagaacactgcatgcaacatctgctcagtacactgtctttataagtatatctagaacatttaacaaagtagagcatatgttagactataaagcaagcctcaacaaatttgaagactaaaattatgttagaggatgttctatgaccatagtgaaattaagataaaaattcataacaaaaagacaactagaaagtcccaaatacctgaaagctgtact--agacttcctcagggaccaacaagacatccaatggaaattagaaaatagtcaactaaatgataattaaaaagacttcacaactcataaaatgcacttaaatccatgctgagcgggaaatttatagtctttggtaatgtattaaaaagaTTAAAAACCATGGgccaagaatggtgactcatgcctgttatacaagtgctttgggaggctcagatgggaggatcacttgagcccaggagtttgaggttacagtgaggtatgattgtgccactaccttagtgacagggcaagatcctgcatccagaaaTATATGTATATAA-AATCggccgggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggcgaatggatcacttgaggtcaggagtttgaga-------------------------------ccagcctggccaacatggtg-aaaacccgtctctactaaaaa------------------------------------------------------------------------------tacaaaaatta----------gctgggcatggtggcaggtgcctgtaatcccagctactcaggaggctgagacagaagaatcgcttgaacccgggaggtggaggttacagtgagccgagatcatgcatggcactccagcctgggcaacagagc--aacccttcatctcaaaaactaaataaataaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       100878 1327 -   1709092 ccctccaaaaaaaaaaaTTTTTTTTTCTATTTCAGAACTATaaacaaagatttgcagaatggattaaaaaccaatatcccaactatatgctgctttccagggtcatgtcttacaatataaggtcactgattgacaggttgaaaaacatgagaaaagatatgccattcaagcaccaaaaatgctattgtaaccaaataggtatcaaagtaaactttaaggcaaaaacatgagaaagaaatgcatttcataagtatcgagagatcaatctacaaagaagatataattctaaaacttaataaaagcatacaaaaatcaataaagccgaacaacaaccctaaaaggagagataattgagatcacaacaaaagctagagattttaacacatttctcttagtaattgatagaataagcatatattccccctgcaaaaaagaatacagaaaatctgaaacatcaaattagtaaatttgacccaacggacacaaacagaatactgcatccaacatctgctcagtacactgtctttataagtatatctagaacatttaacaaagtagagcatatgttagactataaagcaagcctcaacaaatttgaagactaaaattatgttagaggatgttctatgaccatagtggaattaagataaaaattcataacaaaaagacaactagaaagtcccaaatacctgaaagctgtactacagacttcctcagggaccaacaagacatccaaaggaaattagaaaatagtcaactaaatgataattaaaaagacttcacaactcataaaatgcacttaaatccatgctgagcaggaaatttatagtctttggtaatgtattaaaaagaTTAAAAACCATGGgccaagaatggtgactcatgcctgttatacaagtgctttgcgaggctcagatgggaggatcgcttgagcccaggagtttgaggttacagtgaggtatgattgtgccactaccttagtgacagggcaagatcctgcatccagaaaTATATGTATATAA-AATCggccgggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggcgaatggatcacttgaggtcaggagtttgcga-------------------------------ccagcctggccaacatggtgaaaaacccgtctctactaaaaa------------------------------------------------------------------------------tacaaaaatta----------gctgggcatggtggcaggtgcctgtaatcccagctactcaggaggctgagacagaagaatcgcttgaacctgggaggcggaggttacagtgagccaggatcacgcattgcactccagcctgggcgacagagc--aacccttcatctcaaaaactaaataaataaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17260402 1327 - 121039945 ccccatc--aaaaaaaTTTTTTTTTTCTATTTCAGAACTATaaataaagatatgcagaatggactaaaaaccaatatcccaactatatgctgctttccagggtcatgtcttacaatataaggtcactgattgacaggttgaaaaacatgagaaaagatatgccattcgagcaccaaaaatgctgctgtaaccaaacaggtatcaaagtaaactttaaggcaaaaacatgagaaagaaatgcatttcataagtatccagagatcaatccaca---aagatataattctaaaacttaataaaagcatacaaaaatcaatacagccaaacaacaaccctaaaaggagagataattgagatcacaacaaaagctagggattttaacacatttctcttagtaactgatagaataagcctatcttccccctgcaaaaaagaatatagaaaatctgaaacatcaaattagtaaatttgacctaatggacataaacagaacactgcatccaacatctactcagtacactgtttgtttaagtatatctagaacatttaacaaagtagagcatatgttagactataaagcaagcctcaacaaatttaaagactgaaattatgttagaggatgttctatgatcatagtggaattaagataaaaattcacaacaaaaagccaactagaaagtcccaaatacctgaaagctgtactacacacttcctcagggaccaacaagacatccaatggaaattagaatatagtcaactaaatgataattaaaaagatttcac---------------------------------------------------------------------------------ggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggctgaagcgggcggatcacctgaggtcaggagttcgagacca-----------------------gcctggccaacatggtgaaaccccgtctctactaaaaaat---tataataattagccgggcatggtggcacaggcctataatcccagctactcaggaggctgaggcaggagaattgcttgagccggggaggcggaggttgcagtaagccaagattgtgccactgcattccagcctggctgacaaagcg-aga--ctgtctccaaaaaaaaaaaaaaaaagacttcacaactcataaaatgcacttaaatccatgctgagtgggaaatttatagtctttggtaacatattaaaaagaTTAAAAAACACGGgccaagaatggtgactcatgcctgttatacaagtgcgctgggaggctcagatgaaaggatcgcttgaacccaggagtttgaggttacagtgagctatgactgtgc----cact---acctgagtgacagggcgagaccctgcatccagaaaTATATGTATGTAAAA
i nomLeu3.chr6              C 0 I 6890
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22299130 1245 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e saiBol1.JH378108           50529456 7552 +  54856640 I

a score=807386.000000
s hg38.chr15_KI270850v1_alt    391967 1477 +    430880 ataaataaaaTAAAATCAATGATCAgggtaatattagtgaaatggc-gaataaggacctctgacaattcttcctacataaaaaccaatgagaacactagcaaaaaattgtcacaataaactttgtcagaactctggaaattaaaccaaaagcttgcagaaatctggggagtatttgtttaaaaaataaaaacaagatagctgaatcttggtaagaacaacattctttgtggccttttaatttgtattattttcataccttcctctctagctctactacaaccctg-aaaaccagcaacctgcatcacagcaaaaattagcagcctggaagccactgaaaggacaaaacagttggagctcaagccccatcctcaatgaattgtcattacttgaccttttacatggttacacacaaggtcccacttatgtggttgtatttgacctacctccgagctcaccaagtacagccagccatttcccatttcccagggaaagtttatttaaaaaaaaaaaatcagaggcaattattaaatatcccaggtgcctgaggcattaggcaacagtttaggaactcaacaggctaaccaaaaaagcttaaaaggctggggaatgaaatatgaggctttataaaaaactcaatatattcctgggaatctaggctaacctgcatgcttgaaagaaagc-----attagaaggccctaagctctctctcctggttaaccttgaggctctgtacaaacagcaagtgaagaatacaagaatactgcagagttgtaaactgtctggctcagtgtggagggcatactgggccccttgtcaaagactgggaaacttactggttctaagcatgtaaggcagtttctgtccatcattagccgactactaagataaccaagcagagacttcagtggccacatatttaaaaaatgcgaagtttacagaactagctgagaagagccactaaatgaacaacaacaaacaagaacccttcagcctgtggaggacggataacccgatttccagacttgctacattatttccaatgtccaattttcaagacaaaatttataagacattcaaagaaacaagtatggcccattcatgggggaaaaaatcactaaaaatggtccctgacaaagggcagacattacatgtattagacaaagactctagctattttcaatatgtatgaagagctaaaggatagcatatctggctgtggacaatggctctgtaatcccagcactttgagaggcccagaacgaaggatcacttgaggccaggagttcaagccaagcctgggcaacatagcaaggctccattgctacaaaaaaCAAAACAACGggccaggtgcagtggctcacacctgtaatcccagcactttgggaggccgaggcaggcggatcacaaggtcaggagattgagagcatcctggctaacagggtgaaaccctgtctctactaaaatacaaaaaattagctgg
s panTro5.chr15              63545037 1480 +  83230942 ataaataaaaTAAAATCAATGATCAgggtaatattagtgaaatggc-gaataaggacctctgacaattcttcctacataaaaaccaatgagaacactagcaaaaaattgtcacaataaactttgtcagaactctggaaattaaaccaaaagcttgcagaaatctggggagtatttgtttaaaaaataaaaacaagatagctgaatcttggtaagaacaacattctttgtggccttttaatttgtattattttcataccttcctccctagctctactacaaccctg-aaaaccagcaacctgcatcacagcaaaaattagcagcctggaagccactgaaaggacaaaacagttggagctcaagccccatcctcaatgaattgtcattacttgaccttttacatggttacacacaaggccccacttatgtggttgtatttgacctacctccgagctcaccaagtacagccagccatttcccatttcccagggaaagtttgtttaaaaaaaaaaaatcagaggcaattattaaatatcccaggtgcctgaggcattaggcaacagtttaggaactcaacaggctaaccaaaaaagcttaaaaggctggggaattaaatatgaggctttataaaaaactcaatatattcctgggaatctaggctaacctgcctgctggaaagaaagcattagattagaaggccctaagctctctctcctggttaaccttgaggctctgtacaaacaggaagtgaagaatacaagaatactgcagagttgtaaactgtctggctcagtgtggagggcatactgggccccttgtcaaagactaggaaacttactagttctaagcatgtaaggcagtttctgtccatcattagccaactactaagataaccaagcagagacttcagtggccacatattaaaaaaatgcgaagtttacagaactagctgagaaaagccactaaatgaacaa-aacaaacaagaacccttcagcctgtggaggacggataacccgatttccagacttgctacattattttcaatgtccaatttacaagacaaaatttataagacattcaaagaaacaagtatggcccattcatggggaaaaaaatcactaaaaatggtccctgacaaagggcagacattaaatgtattagacaaatactctagctattttcaatatgtatgaagagctaaaggataccatatctggctgtggacaatggctctgtaataccagcactttgagaggcccagaacgaaggatcacttgaggccaggagttcaagccaagcctgggcaacatagcaaggctccattgctacaaaaaaCAAAACAACGggccgggtgcggtggctcacacctgtaatcccagcactttgggaggccgaggcaggt-gatcacaaggtcaggagattgagagcatcctggctaacagggtgaaaccctgtctctactataatacaaaaaattagctgg
i panTro5.chr15             C 0 I 13
s panPan2.chr15              80501961 1480 +  99763055 ataaataaaaTAAAATCAATGATCAgggtaatattagtgaaatggc-gaataaggacctctgacaattcttcctacataaaaaccaatgagaacactagcaaaaaattgtcacaataaactttgtcagaactctggaaattaaaccaaaagcttgcagaaatctggggagtatttgtttaaaaaataaaaacaagatagctgaatcttggtaagaacaacattctttgtggccttttaatttgtattattttcataccttcctccctagctctactacaaccctgaaaaaccagcaacctgcatcacagcaaaaattagcagcctggaagccactgaaaggacaaaacagttggagctcaagccccatcctcaatgaattgtcattacttgaccttttacatggttacacacaaggccccacttacgtggttgtatttgacctacctccgagctcaccaagtacagccagccatttcccatttcccagggaaagtttgttt--aaaaaaaaaatcagaggcaattattaaatatcccaggtgcctgaggcattaggcaacagtttaggaactcaacaggctaaccaaaaaagcttaaaaggctggggaattaaatatgaggctttataaaaaactcaatatattcctgggaatctaggctaacctgcatgctggaaagaaagcattagattagaaggccctaagctctctctcctggttaaccttgaggctctgtacaaacaggaagtgaagaatacaagaatactgcagagttgtaaactgtctggctcagtgtggagggcatactgggccccttgtcaaagactaggaaacttactggttctaagcatgtaaggcagtttctgtccatcattagccaactactaagataaccaagcagagacttcagtggccacatattaaaaaaatgcgaagtttacagaactagctgagaaaagccactaaatgaacaa-aacaaacaagaacccttcagcctgtggaggacggataacccgatttccagacttgctacattattttcaatgtccaatttacaagacaaaatttataagacattcaaagaaacaagtatggcccattcatggggaaaaaaatcactaaaaatggtccctgacaaagggcagacattacatgtattagacaaatactctagctattttcaatatgtatgaagagctaaaggataccatatctggctgtggacaatgactctgtaatcccagcactttgagaggcccagaacgaaggatcacttgaggccaggagttcaagccaagcctgggcaacatagcaaggctccattgctacaaaaaaCAAAACAACGggccgcgtgcggtggctcacacctgtaatcccagcactttgggaggccgaggcaggtggatcacaaggtcaggagattgagagcatcctggctaacagggtgaaaccctgtctctactataatacaaaaaattagctgg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       102205 1480 -   1709092 acaaataaaaTAAAATCAATGATCAgggtaatattagtgaaatggcagaataaggacctctga-aattcttcctacataaaaaccaatgagaacactagcaaaaaattgtcacaataaactttgtcagaactctggaaattaaaccaaaagcttgcagaaatctggggagtatttgtttaaaaaataaaaacaagatagctgcatcttggtaagaacaacattctttgtggccttttaatttgtattattttcataccttcctccctagctctactacaaccctg-aaaaccagcaacctgcatcacagcaaaaattagcagcctggaagccactgaaaggacaaaacagttggagctcaagccccatcctcaacgaattgtcattacttgaccttttacatggttacacacaaggccccacttatgtggttgtatttgacctacctccgagctcaccaagtacagccagccatttcccatttcccagggaaagtttgtttaaaaaaaaaaaatcaggggcaattattaaatatcccaggtgcctgaggcattaggcaacagtttaggaactcaacaggctaaccaaaaaagcttaaaaggctggggaatgaaatatgaggctttataaaaaactcaatatattcctgggaatctaggctaacctgcgtgcttgaaagaaagcattagattagaaggccctaagctctctctcctggctaaccttgaggctctgtacaaacaggaagtgaagaatacaagaatactgcagagttgtaaactgtctggctcagtgtggagggcatactgggccccttgtcaaagactgggaaacttactggttctaggcatgtaaggcagtttctgtccatcattagccgactactaagataagcaagcagagacttcagtggccacatattaaaaaaatgcgaagtttacagaactagctgagaaaagccactaaatgaacaacaacaaacaagaacccttcagcctgtggaggacggataacccgatttccagacttgctacattatttccaatgtccaattttcaagacaaaatttataagacattcaaagaaacaagtatggcccattcatggggaaaaaaatcactaaaaatggtccctgacaaagggcagacattacatgtattagacaaaga--ctagctattttcaatatgtttgaagagctaaaggataccatatctggctgtggacaatggctctgtaatcccagcactttgagaggccaagaacgaaggatcacttgaggccaggagttcaagccaagcctgggcaacatagcaaggctccactgctacaaaaaaCAAAACAACGggccgggtgcggtggctcacacctgtaatcccagcactttgggaggccgaggcaggcggatcacaaggtcaggagattgagagcatcctggctaacagggtgaaaccctgtctctactaaaatacaaaaaattagctgg
i gorGor5.CYUI01015556v1    C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22299130 1245 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e nomLeu3.chr6               17261729 6890 - 121039945 I
e saiBol1.JH378108           50529456 7552 +  54856640 I

a score=14460.000000
s hg38.chr15_KI270850v1_alt    393444 50 +    430880 gcatggtagtgggcacctgtagtcccagctactcaggaggctgatgcagg
s panPan2.chr15              80503441 50 +  99763055 gcatggtagtgggcacctgtagtcccagctactcaggaggctgatgcagg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       103685 50 -   1709092 gcatggtagtgggcacctgtagtcccagctactcaggaggctgatgcagg
i gorGor5.CYUI01015556v1    C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22299130 1245 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e nomLeu3.chr6               17261729 6890 - 121039945 I
e saiBol1.JH378108           50529456 7552 +  54856640 I
e panTro5.chr15              63546517 13 +  83230942 I

a score=1137157.000000
s hg38.chr15_KI270850v1_alt    393494 2131 +    430880 agaatggtgagaacccaggaggcggag-cttgcagtg-agccgagattgatcgcgccactacactccagcctgggtgacagagcaagactccatc------tcaaaaaaaaaaaaaaagacagaaacaagaaaccatatccaaggaactaaagtatgagaataatgtctcaccaaatagagaatattactaaagagacagaaattacatataaaaaagaaccaattagaaattctagagctgaaaggtataataactgcaatgaaaaattcactacaggggctcaacagcagatttaaaaagaaaaacaatcagcaaggctgaagatacagacatggagattatccagtctgaggacaagaaactacagagccacagagacatctgggatacagtcaagtataccaagatacacatattagaagtcccaaagcagatgagggaaagagacagaatatgtgaagaaataatggcagaaaacgttgatgaaaaacattaatctacatattcaaaaaatccaatgaactgcaagtaggataagctcaaagagacctacaccaagacacattaaatggtcaaaagccggagacatagaaagggcaaaactgcaagagagaagcaatcatcatatatgacatacaagggattttcaataacattaatagctgatttcttaccagaaattgtggagccagaaggcagtaggatgacatactgagggagttaaaagaagaaactcaaccaagaattttttatcaccaacacgatccttcaagaatggagaaattaagacattcctagacaaaaagggagtttgtcactagcagacctcccctacaacaaatactaaagagcatctttcccagtgaagtgaaagaatgctagacagttactttaatccacatgaagtaataaagaagaccaaaaaagataactacataggtaaatataatagagagtatatttttgtcttttttttctcctatcagatttaaaagataaccaaatgggggcgggataagaaggtattggtaaaagggtacaaagttttgaccaggataaaaaagttctgaagagccattgtatagaatgacggtaactatagttgtatagttgtatacaactatacaatgtattctatagttgtacttgctgagattttagatgttctcaccacaaaaatataagtatgtgaggtaatgaatatattagctttaatcatttcacagcgtatacatatatcagaacatcacactgtacaccataaagttctcatttgtcaattatatcttaaagctaggaagaagacaaaagatagctaaagttaattataaatctgtattgataggcacaccatgtataaacacctatttgtggccgggcacagtggctcatgcctgtaatcctagcactttgggaggctgaggtgggcggatcacctgaggtcgggagttcgagaccagcctgaccaacatgaagaatccctgtctctactaaaaatacaaaattagccaggtgtgatgccgcatgtctgtaatccccgttacccgggaggctgggagaggagaatcgcttgaacccaggaggcagaggttgtggtgaggcgagatcgcgccattgtactccagcctgggcaacaacagcaaaactccacctcaaaaaaaaa--gacatatttgtaatacattaacagcacaagaggaggagaaaataaagcgatactggtgcaaagtttctgtatactactgaaaataaaattggttattatttgacctagattgttaatataaattaagatgctagttccagctgggcatggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcggatcacttgagttcaggggtttgagaccagcctggccaacatggcgaaaccttgtctctaactaaaaataccaaaaaaattagccgggcatggtgatgggtacctggtatcccagctactcaggaggctgag---ggagaactgcttgaacccaggagctgaggggttacagtgacccgagatggcaccactgcactccaacctgggtgacacagggatactccgtctc---------aaaaaaaaaaaaaaaaagctagttctcagcacatgcgctaagaaaataactt
s panTro5.chr15              63546530 2131 +  83230942 agaat-gcgtgaacccaggaggcggagccttgcagtgcagccgagattgatc-cgccactacactccagcc-gggtgacagagcaagactccatc-aaaaaaaaaaaaaaaaaaaaaagacagaaacaagaaaccatatccaaggaactaaagtatgagaataatgtctcaccaaatagagaatattactaaagagacagaaattacatataaaaaagaaccaattagaaattctagagctgaaaggtataataaccgcaatgaaaaattcactacaggggctcaacagcagatttaaaaagaaaaacaatcagcaaggctgaagatacagacatggagattatccagtctgaggacaagaaactacagagccacagatacatctgggatacagtcaagtataccaagatacacatattagaagtcccaaagcagatgagggaaagagacagaatatgtgaagaaataatggcagaaaacgttgatgaaaaacattaatctacatattcaaaaaatccaatgaactgc-------ataagctcaaagagacctacaccaagacacattaaactgtcaaaagccagagacatagaaagggcaaaactgcaagagagaagcaatcatcatatatgacatacaagggattttcaataacattaatagctgatttcttaccagaaattgtggagccagaa-gcagtaggatgacatact----gagttaaaagaagaaactcaaccaagaattttttatcagcaacacgatccttcaaaaatggagaaattaagacattcctagacaaaaagggagtttgtcactagcagacctcccctacaacaaatactaaagagcatctttcccagtgaagtgaaagaatgctagacagttactttaatccacatgaagtaataaagaagaccaaaaaagataactacataggtaaatataatagagagtatatttttgtcttttttttctcctatcagatttaaaagataaccaaatgggggcgggataagaaggtattggtcaaagggtacaaagttttgaccaggatgaaaaagttctgaagagccattgtatagaatgacggtaactatagttgtatagttgtatacaactatacaatgtattctataggtgtacttgctgagattttagatgttctcaccacaaaaatataagtatgtgaggtaatgaatatattagctttaatcatttcacaatgtatacatatatcagaacatcacactgtacaccataaagttctcatttgtcaattatatcttaaagctaggaagaagataaaagatagctaaagttaattataaatctgtattgataggcacaccatgtataaacacctatttgtggccgggcacagtggctcatgcctgtaatcctagcactttgggaggctgaggtgggcggatcacctgaggtcgggagttcgagactagcctgaccaacatgaagaatccctgtctctactaaaaacacaaaattagccaggtgtgatgccgcatgtctgtaatccccgttacccgggaggctgggagaggagaatcgcttgaacccaggaggcagaggttgtggtgagctgagatcgcgccattgtactccagcctgggcaacaagagcaaaactccacctcaaaaaaaaaacgacatatttgtaatacattaacagcacaagaggaggagaaaataaagcgatactggtgcaaagtttctgtatactactgaaaataaaattggttattatttgacctagattgttaatataaattaaggtgctagttccggctgggcatggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggcagatcacttgagttcaggggtttgagaccagcctggccaacatggcgaaaccttgtctctaactaaaaataccaaaaaaattagccgggcatggtgatgggtacctggtatcccagctactcaggaggctgagggaggagaactgcttgaacccaggagctgaggggttacagtgacccgagatggcaccactgcactccaacctgggtgacacagggagactccgtctc------aaaaaaaaaaaaaaaaaaaagctagttctcagcacatgcgctaagcaaataactt
i panTro5.chr15             I 13 C 0
s panPan2.chr15              80503491 2134 +  99763055 agaatggtgagaacccaggaggcggag-cttgcagtg-agccgagattgatcgcgccactacactccagcctgggtgacagagcaagactccatc---tcaaaaaaaaaaaaaaaaaagacagaaacaagaaaccatatccaaggaactaaagtatgagaataatgtctcaccaaatagagaatattactaaagagacagaaattacatataaaaaagaaccaattagaaattctagagctgaaaggtataataaccgcaatgaaaaattcactacaggggctcaacagcagatttaaaaagaaaaacaatcagcaaggctgaagatacagacatggagattatccagtctgaggacaagaaactacagagccacagatacatctgggatacagtcaagtataccaagatacacatattagaagtcccaaagcagatgagggaaagagacagaatatgtgaagaaataatggcagaaaacgttgatgaaaaacattaatctacatattcaaaaaatccaatgaactgc-------ataagctcaaagagacctacaccaagacacattaaactgtcaaaagccggagacatagaaagggcaaaactgcaagagagaagcaatcatcatatatgacatacaagggattttcaataacattaatagctgatttcttaccagaaattgtggagccagaaggcagtaggatgacatactgagggagttaaaagaagaaactcaaccaagaattttttatcagcaacacgatccttcaaaaatggagaaattaagacattcctagacaaaaagggagtttgtcactagcagacctcccctacaacaaatactaaagagcatctttcccagtgaagtgaaagaatgctagacagttactttaatccacatg----aataaagaagaccaaaaaagataactacataggtaaatataatagagagtatatttttgtc-tttttttctcctatcagatttaaaagataaccaaatgggggcgggataagaaggtattggtcaaagggtacaaagttttgaccaggatgaaaaagttctgaagagccattgtatagaatgacggtaactatagttgtatagttgtatacaactatacaatgtattctatagttgtacttgctgagattttagatgttctcaccacaaaaatataagtatgtgaggtaatgaatatattagctttaatcatttcacaatgtatacatatatcagaacatcacactgtacaccataaagttctcatttgtcaattatatcttaaagctaggaagaagataaaagatagctaaagttaattataaatctgtattgataggcacaccatgtataaacacctatttgtggccgggcacagtggctcatgcctgtaatcctagcactttgggaggctgaggtgggcggatcacctgaggtcgggagttcgagactagcctgaccaacatgaagaatccctgtctctactaaaaatacaaaattagccaggtgtgatgccgcatgtctgtaatccccgttacccgggaggctgggagaggagaatcgcttgaacccaggaggcagaggttgtggtgagccgagatcgcgccattgtactccagcctgggcaacaagagcaaaactccacctcaaaaaaaaa-cgacatatttgtaatacattaacagcacaagaggaggagaaaataaagcgatactggtgcaaagtttctgtatactactgaaaataaaattggttattatttgacctagattgttaatataaattaaggtgctagttccggctgggcatggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggcagatcacttgagttcaggggtttgagaccagcctggccaacatggcgaaaccttgtctctaactaaaaatacc-aaaaaattagccgggcatggtgatgggtacctggtatcccagctactcaggaggctgagggaggagaactgcttgaacccaggagctgaggggttacagtgacccgagatggcaccactgcactccaacctgggtgacacagggagactccatctcaacaaaaaaaaaaaaaaaaaaaaaagactagttctcagcacatgcgctaagcaaataactt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       103735 2138 -   1709092 agaatggtgagaacccaggaggcagag-cttgcagtg-agccgagattgatcgcgccactacactccagcctgggtgacagagcaatactccacctcaaaaaaaaaaaaaaaaaaaaagacagaaacaagaaaccgtatctaaggaactaaagtatgagaataatgtctcaccaaatagagaatattactaaagagacagaaattacatataaaaaagaaccaattagaaattctagagctgaaaggtataataactgcaatgaaaaattcactacaggggctcaacagcagatttaaaaagaaaaacaatcagcaaggctgaagatacagacatggagattatccagtctgaggacaagaaactacagagccacagagacatctgggatacagtcaagtataccaagatacacatattagaagt-ccaaagcagatgagggaaagagacagaatatgtgaagaaataatggcagaaaacgctgatgaaaaacattaatctacatattcaaaaaatccaatgaactgcaagtaggataagctcaaagagacctacaccaagacacattaaactgtcaaaagccagagacatag-aatggcaaaactgcaagagagaagcaatcatcatatatgacatacaagggattttcaataacattaatagctgatttcttaccagaaattgtggagccagaaggcagtaggatgacatactgagggagttaaaagaagaaactcaaccaagaattttttatcagcaacacgatccttcaaaaatggagaaattaagacattcctagacaaaaagggagtttgtcactagcagacctcccctacaacaaatactaaagagcatctttcccagtgaagtgaaagtatgctagacagttactttaatccacatgaagtaataaagaagaccaaaaaagataactacataggtaaatataatagagagtatatttttgtctttttttt---ctatcagatttaaaaggtaaccaaatgggggcgggataagaaggtattggtcaaagggtacaaagttttgaccaggatgaaaaagttctgaaaagccattgtatagaatgacggtaactacagttgtatagttgtatacaactatacaatgtattctatagttgtacttgctgagattttagatgttctcaccacaaaaatataagtatgtgaggtaatgaatatattagctttaatcatttcacaatgtatacatatatcagaacattacactgtacaccataaagctctcatttgtcaattatatcttaaagctaggaagaagataaaagatagctaaagttaattataaatctgtattgatagacacaccatgtataaacacctatttgtggccgggcacagtggctcatgcctgtaatcctagcactttgggaggctgaggtgggcggatcacctgaggtcgggagttcgagaccagcctgaccaacatgaagaatccctgtctctactaaaaatacaaaattagccaggtgtgatgccgcatgtctgtaatcccagctacccgggaggctgagagaggagaatcgcttgaacccgggaggcagaggttgtggtgagccgagatcgcgccattgcactccagcctgggcaacaagagcaaaactccacctcaaaaaaaag---acatatttgtattacattaacagcacaagaggaggagaaaataaagcgatactggtgcaaactttctgtatactactgaaaat-aaattggttattatttgacctcgattgttaatataaattaaggtactagttctggctgggcatggtggctcatgcctgtaat-ccagcactttgggaggtcgaggcaggcggatcacttgagttca-gggtttgagaccagcctggccaacatggcgaaaccttgtctctaactaaaaataccaaaaaaattagccgggcatggtgatgggtacctggtatcccagctactcaggaggctgagggagaagaactgcttgaacccaggagctgaggggttacagtgacccaagatggcgccactgcactccaacctgggtgacacagcgagactccatctc--aaaaaaaaaaaaaaaaaaaaaaaagctagttctcagcacatacgctaagaaaataactt
i gorGor5.CYUI01015556v1    C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22299130 1245 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e nomLeu3.chr6               17261729 6890 - 121039945 I
e saiBol1.JH378108           50529456 7552 +  54856640 I

a score=1365.000000
s hg38.chr15_KI270850v1_alt    395625 5 +    430880 aaaaa
s panTro5.chr15              63548661 5 +  83230942 aaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80505625 5 +  99763055 aaaaa
i panPan2.chr15             C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22299130 1245 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e nomLeu3.chr6               17261729 6890 - 121039945 I
e saiBol1.JH378108           50529456 7552 +  54856640 I
e gorGor5.CYUI01015556v1       105873 0 -   1709092 C

a score=4203.000000
s hg38.chr15_KI270850v1_alt    395630 61 +    430880 tacatagta----aggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgag
s panPan2.chr15              80505630 65 +  99763055 tacatagtaaaagaggccaggcatagtagctcatgcctgcaatcccagcactttgggaagccaag
i panPan2.chr15             C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22299130 1245 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e nomLeu3.chr6               17261729 6890 - 121039945 I
e saiBol1.JH378108           50529456 7552 +  54856640 I
e gorGor5.CYUI01015556v1       105873  0 -   1709092 C
e panTro5.chr15              63548666  0 +  83230942 C

a score=0.000000
s hg38.chr15_KI270850v1_alt    395691 245 +    430880 gcgggcggatcacgaggtcaggagatcgagaccatcccggctaaaatggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtagtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcccgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaa
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22299130 1245 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e panPan2.chr15              80505695   0 +  99763055 C
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e nomLeu3.chr6               17261729 6890 - 121039945 I
e saiBol1.JH378108           50529456 7552 +  54856640 I
e gorGor5.CYUI01015556v1       105873   0 -   1709092 C
e panTro5.chr15              63548666   0 +  83230942 C

a score=455.000000
s hg38.chr15_KI270850v1_alt    395936 5 +    430880 aaaaa
s gorGor5.CYUI01015556v1       105873 5 -   1709092 aaaaa
i gorGor5.CYUI01015556v1    C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22299130 1245 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e panPan2.chr15              80505695 0 +  99763055 C
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e nomLeu3.chr6               17261729 6890 - 121039945 I
e saiBol1.JH378108           50529456 7552 +  54856640 I
e panTro5.chr15              63548666 0 +  83230942 C

a score=18065.000000
s hg38.chr15_KI270850v1_alt    395941 64 +    430880 tacatagtaaaagaggccaggcatagtagctcatgcctgcaatcccagcactttgggaagccaa
s panTro5.chr15              63548666 64 +  83230942 tacatagtaaaagaggccaggcatagtagctcatgcctgcaatcccagcactttgggaagccaa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       105878 64 -   1709092 tacatagtaaaagaggccaggcatagtagctcatgcctgcaatcccagcactttggggagccaa
i gorGor5.CYUI01015556v1    C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22299130 1245 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e panPan2.chr15              80505695  0 +  99763055 C
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e nomLeu3.chr6               17261729 6890 - 121039945 I
e saiBol1.JH378108           50529456 7552 +  54856640 I

a score=1702316.000000
s hg38.chr15_KI270850v1_alt    396005 3160 +    430880 ggtgggaagatcacttaaggccaggagtttgacaccagcctgggtgacagagcaagactttgtctctttaaaaaaaacaagaaAcatatatataagaatgacaaggaaattaaagagacaaggaaattaaagaaacaaggaaattaaaatgtcataggattttatactagaaaatatcttaacacaaaagaaagcagtaatggaagaatagggggaaaagacacaagacatatggaaaacaaacagaaaaatggcaggtgta-----tatcttatcagtaattatattaaatgtagatggatcaaactcttgaataaatgacagactgacagaatggactttttaaaagcatgatccaaatatatactgcacaacaggagatacactttaagactcaaagacacaaatagggctgggcacggtggctcacgcctgtaatcccagcattttgggaggctgaggcaggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattacccaggtgtggtggtgtgtgcctgtagtctcagctactcgggaggctgagacaggagaattgcttgaactgggaagcagaagttgcagtgagccaagatcacaccactgcactccagcctggatgacagagcgagactcaagtctcaaggaaaaaaacaaagacacaaaagacacaaataggttgaaaggatggaaaaaagtataccctgcaaataataaccaaatgagaggtagaataactgtgcctattaccagacaaaacagacattaagacaaaaattgttactagagataaaggaggacattttataataaaagggttaatctatcaaaaaaaatttaacaattataaacaccaatgaacctaacacagaccaccaaaatatatgcaacaaaaactgacagaaatgataggagaaacagatacttcaacagtaacactattgctggaaacatcaatagctcactttcagcaatgatggacagaaactgccttacatgcttagaaccagtaagtttcccagtctttgacaaggggcccagtatgccctccacactgagccagacagtttacaactctgcagtattctt--------cacttcttgtttgtacagagcctcaaggttaaccaggagagagagcttagggccttctaatctaatgctttctttcaagcatgcaggttagcctagattcccaggaatatattgag-ttttttataaagcctcatatttcattccccagccttttaagcttttttggttagcctgttgagttcctaaactgttgcctaatgcctcaggcacctgggatatttaataattgcctctgatttttttttttaaacaaactttccctgggaaatgggaaatggctggctgtacttggtgagctcggaggtaggtcaaatacaaccacataagtggggccttgtgtgtaaccatgtaaaaggtcaagtaatgacaattcgttgaggatggggcttgagctccaactgttttgtcctttcagtggcttccaggctgctaatttttgctgtgatgcaggttgctggttttcagggttgtagtagagctagggaggaaggtatgaaaataatacaaattaaaaggccacaaagaatgttgttcttaccaagattcagctatcttgtttttagtttttaaacaaatactccccagatttctgcaagcttttggtttaatttccagagttctgacaaagtttattgtgacaa-ttttttgctagtgttctcattggtttttatgtaggaagaatttcagaggtccttattctgccatttcactaatattacccTGATCATTGATTTTATTTT-----CATTTATTTATTtaatgtatagaacaagatgacagtatcaggaaggaaactgtatacttgaacactataaaacaactagaacagacacaagatatttcaatctacaaaagaagaatacacaatcttaagtgtatatgaaatattctccaggacagaccatatgttagttaggccatgaagtctcaataaatgtgaaatggctgaaatcatacaaagtacattctgcaaccacaaaagaacagaattagaagtcagtaacagaaggaaaactggaaaattctcaaaacgtggaaattaaacaacatactcttcatcaatggatcgaagaagaaatcacagggcaatgagaaaatactttgagataaagaaacacaccatactaaaacttacggcatgcaatgaaaataatacttggaaagttgtaaaatcctatgttaaagattatgctgaatgtcgtagctcacacctgtaatcccagaactttaggaggctgaggtaggaggatcacttgagcccaggagtttgagacagcccaggcaacatagtgagagaccctgcctctacaaaaaaaatataaattagctaggcatggtggtgcacaactgtagtcccagctgctcaagaggctgaggtgggaggattgtttgagcctgggaggtcgcggctgcagtgagctgtgatcacgccactgcactccagcctgggcaacagagcgagagcctgtctcagaaaaaaaaa-aataataacaatagtaattaaatatcaataacctaacattctacctaaagaaactagaaaaaataaacacaaagcaagtagaggaagcaacaaagattaaagtcgaaataatgtctagaaaaactataaaaaaaaaaaacagaagttggttctttgaaaaacatctgcaaaactgataaaccttgagctagattaaccaagaagaaatgaaagtgggtacaatactaccaaccttacagaaagtaaaaaagaatataaattactatgggctggctgcaatggctcatgcctgtaatcccagcactttgggaggctgaagtgggtggatcacctgaggttgggagtttgagatcagcccaatcaacatagaaaaactccgtctctactaaaaatacaaaattagccaggcatggtggcgcatgcctgtaatatcagctacttgggaggctgaggcgggagaatcgcttgaacctgggaggtggaggttgcggtgagccgagatcaccccactgcactccagcctaggcaacaagagcaaacctccgtggc
s panTro5.chr15              63548730 3151 +  83230942 ggtgggaagatcacttaaggccaggagtttgacaccagcctgggtgatagagcaagactttgtctctttaaaaaaA-CAAGAAAcatatatataagaatgacaaggaaattaaagagacaaggaaattaaa-----------------atgtcataggattttataccagaaaatatcttaacacaaaagaaagcagtaatggaagaatagggagaaaagacacaagacatatggaaaacaaacagaaaaatggcaggtgta-----tatcttatcagtaattatattaaatgtagatggatcaaacccttgaataaatgacacactgacagaatggactttttaaaagcatgatccaaatatatactgcacaacaggagatacactttaagactcaaagacacaaatagggctgggcacggtggctcacgcctgtaatcccagcattttgggaggctgaggcaggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattacccaggtgtggtggtgtgtgcctgtagtctcagctactcgggaggctgagacaggagaattgcttgaactgggaggcagaggttgcagtgagccaagatcacaccactgcactccagtctggatgacagagcgagactcaagtctcaaggaaaaaaacaaagacacaaaagacacaaataggttgaaaggatggaaaaaagtatatcctgcaaataataaccaaatgagaggtagaataactgtacctattaccagacaaaacagacattaagacaaaaattgttactagagataaaggaggacattttataataaaagggttaatctatcaaaaaaa-tttaacaattataaacaccaatgaacctaacacagaccaccaaaatatatgcaacaaaaactgacagaaatgataggagaaacagatacttcaacagtaacactattgttggaaacatcaatagcgcactttcagcaatgatggacagaaactgccttacatgcttagaactagtaagtttcccagtctttgacaaggggcccagtatgccctccacactgagccagacagtttacaactctgcagtattcttgtattcttcacttcctgtttgtacagagcctcaaggttaaccaggagagagagcttagggccttctaatctaatgctttctttcaagcaggcaggttagcctagattcccaggaatatattgag-ttttttataaagcctcatatttaattccccagccttttaagcttttttggttagcctgttgagttcctaaactgttgcctaatgcctcaggcacctgggatatttaataattgcctctgatttttttttt-aaacaaactttccctgggaaatgggaaatggctggctgtacttggtgagctcggaggtaggtcaaatacaaccacgtaagtggggccttgtgtgtaaccatgtaaaaggtcaagtaacgacaattcgttgaggatggggcttgagctccaactgttttgtcctttcagtggcttccaggctgctaatttttgctgtgatgcaggttgctggttttcagggttgtagtagagctagggaggaaggtatgaaaataatacaaattaaaaggccactaagaatgttgttcttaccaagattcagctatcttgtttttattttttaaacaaatactctccagatttctgcaagcttttggtttaatttccagagttctgacaaagtttattgtgacaa-ttttttgctagtgttctcattggtttttatgtaggaagaatttcagaggtccttattctgccatttcactaatattacccTGATCACTGattttattttattttcatttatttatttaatgtatagaacaagatgacagtatcaggaaggaaactgtatacttgaacactataaaccaactagaacagacacaagatatttcaatcaacaaaagaagaatacacaatcttaagtgtatatgaaatattctccaggacagaccatatgttagttaggccatgaagtctcaataaatgtgaaatggctgaaatcatacaaagtacattctgcaaccacaaaagaacagaattagaagtcagtaacagaaggaatactggaaaattctcaaaacgtggaaattaaacaacatactcttcatcaatggatcgaagaagaaatcacagggcaatgagaaaatactttgagataaagaaacacaccatactaaaacttacggcatgcaatgaaaataatacttggaaagttgtaaaatcctatgttaaagattatgccaaatgtcgtagctcacacctgtaatcccagaactttaggaggctgaggtaggaggatcacttgagcccaggagtttgagacagcccaggcaacatagtgagaggccccgcctctacaaaaaaaacataaattagctaggcatggtggtgcacaactgtagtcccagctgctgaagaggctgaggtgggaggattgtttgagcctgggaggtcgcggctgcagtgagctgtgatcacgccactgcactccagcctgggcaacagagcgagagcctgtctcagaaaaaaaaa-aaaaataacaatagtaattaaatatcaataacctaacattctacctaaagaaactagaaaaaataaacacaaagcaagcagaggaagcaacaaagattaaagtcgaaataatgtctagaaaaactattaaaaaaaaa--cagaagttggttctttgaaaaacatctgcaaaactgataaaccttgagctagattaaccaagaagaaatgaaagtgggtacaatactaccaaccttacagaaagaaaaaaagaatataaattactatgggctggctgcaatggctcatgcctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggttgggagttcgagatcagcccaaccaacatggaaaaactccgtctctactaaaaatacaaaattagccaggcatggtggcgcatgcctgtaatatcagctacttgggaggctgaggcgggagaatcgcttgaacctgggaggtggaggttgcggtgagccgagatcgccccactgcactccagcctaggcaacaagagcaaaactccgtggc
i panTro5.chr15             C 0 I 10
s panPan2.chr15              80505695 3163 +  99763055 ggtgggaagatcacttaaggccaggagtttgacaccagcctgggtgatagagcaagactttgtctctttaaaaaaA-CAAGAAAcatatatataagaatgacaaggaaattaaagagacaaggaaattaaagaaacaaggaaattaaaatgtcataggattttataccagaaaatatcttaacacaaaagaaagcagtaatggaagaatagggagaaaagacacaagacatatggaaaacaaacagaaaaatggcaggtgtatatcttatcttatcagtaattatattaaatgtagatggatcaaacccttgaataaatgacacactgacagaatggactttttaaaagcatgatccaaatatatactgcacaacaggagacacactttaagactcaaagacacaaatagggctgggcacggtggctcacgcctgtaatcccagcattttgggaggctgaggcaggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattacccaggtgtggtggtgtgtgcctgtagtctcagctactcgggaggctgagacaggagaattgcttgaactgggaggcagaggttgcagtgagccaagatcacaccactgcactccagcctggatgacagagcgagactcaagtctcaaggaaaaaaacaaagacacaaaagacacaaataggttgaaaggatggaaaaaagtatatcctgcaaataataaccaaatgagaggtagaataactgtacctattaccagacaaaacagacattaagacaaaaattgttactagagataaaggaggacattttataataaaagggttaatctatcaaaaaaa-tttaacaattataaacaccaatgaacctaacacagaccaccaaaatatatgcaacaaaaactgacagaaatgataggagaaacagatacttcaacagtaacactattgttggaaacatcaatagcgcactttcagcaatgatggacagaaactgccttacatgcttagaactagtaagtttcccagtctttgacaaggggcccagtatgccctccacactgagccagacagtttacaactctgcagtattcttgtattcttcacttcctgtttgtacagagcctcaaggttaaccaggagagagagcttagggccttctaatctaatgctttctttcaagcaggcaggttagcctagattcccaggaatatattgag-ttttttataaagcctcatatttaattccccagccttttaagc-tttttggttagcctgttgagttcctaaactgttgcctaatgcctcaggcacctgggatatttaataattgcctctgattttttttt--aaacaaactttccctgggaaatgggaaatggctggctgtacttggtgagctcggaggtaggtcaaatacaaccacgtaagtggggccttgtgtgtaaccatgtaaaaggtcaagtaatgacaattcgttgaggatggggcttgagctccaactgttttgtcctttcagtggcttccaggctgctaatttttgctgtgatgcaggttgctggttttcagggttgtagtagagctagggaggaaggtatgaaaataatacaaattaaaaggccactaagaatgttgttcttaccaagattcagctatcttgtttttattttttaaacaaatactctccagatttctgcaagcttttggtttaatttccagagttctgacaaagtttattgtgacaa-ttttttgctagtgttctcattggtttttatgtaggaagaatttcagaggtccttattctgccatttcactaatattacccTGATCACTGATTTTATTTT-----CATTTATTTATTtaatgtatagaacaagatgacagtatcaggaaggaaactgtatacttgaacactataaaccaactagaacagacacaagatatttcaatcaacaaaagaagaatacacaatcttaagtgtatatgaaatattctccaggacagaccatatgttagttaggccatgaagtctcaataaatgtgaaatggctgaaatcatacaaagtacattctgcaaccacaaaagaacagaattagaagtcagtaacagaaggaatactggaaaattctcaaaacgtggaaattaaacaacatactcttcatcaatggatcgaagaagaaatcacagggcaatgagaaaatactttgagataaagaaacacaccatactaaaacttacggcatgcaatgaaaataatacttggaaagttgtaaaatcctatgttaaagattatgccaaatgtcgtagctcacacctgtaatcccagaactttaggaggctgaggtaggaggatcacttgagcccaggagtttgagacagcccaggcaacatagtgagaggccccgcctctacaaaaaaaatataaattagctaggcatggtggtgcacaactgtagtcccagctgctgaagaggctgaggtgggaggattgtttgagtctgggaggtcgcggctgcagtgagctgtgatcacgccactgcactccagcctgggcaacagagcgagagcctgtctcagaaaaaaaaa-a--aataacaatagtaattaaatatcaataacctaacattctacctaaagaaactagaaaaaataaacacaaagcaagtagaggaagcaacaaagattaaagtcgaaataatgtctagaaaaactattaaaaaaaa---cagaagttggttctttgaaaaacatctgcaaaactgataaaccttgagctagattaaccaagaagaaatgaaagtgggtacaatactaccaaccttacagaaagaaaaaaagaatataaattactatgggctggctgcaatggctcatgcctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggttgggagttcgagatcagcccaactaacatggaaaaactccgtctctactaaaaatacaaaattagccaggcatggtggcgcatgcctgtaatatccgctacttgggaggctgaggcgggagaatcgcttgaacctgggaggtggaggttgcggtgagccgagatcgccccactgcactccagcctaggcaacaagagcaaaactccgtggc
i panPan2.chr15             C 0 I 389
s gorGor5.CYUI01015556v1       105942 3134 -   1709092 ggtgggaagatcacttaaggccaggagtttgacaccagcctgggtgacagagcaagactttgtctctttaaaaaa--CAAGAAAcatatatataagaatgacaaggaaattaaagaaacaaggaaattaaa-----------------atgtcataggattttatactag-aaatatcttaacacaaaagaaagcagtaatggaagaat-gggggaaaagacacaagacatatggaaaacaaacag-aaaatggcaggtgta-----tatcttatcagtaattatattaaatgtagatggatcaaacccttgaataaatgacagactgacagaatggactttttaaaagcatgatccaaatatatactgtacaataggagatacactttaagactcaaagacacaaatagggctgggcacggtggctcacgcctgtaatcccagcattttgggaggctgaggcaggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaagtacaaaaattacccaggtgtggtggtatgtgcctgtagtctcagctactcaggaggctgagacaggagaattgcttgaactgggaggcagaggttgcagtgagccaagatcacgccactgcactccagcctggatgacagagtgagactcaagtctcaaggaaaaaaacaaagacacaaaagacacaaataggttgaaaggatgg-aaaaagtataccctgcaaataataaccaaatgaga-gtagaataactgtacctgttaccagacaaaacagacattaagacaaaaattgttactagagataaaggaggacattttataataaaagggttaatctatcaaaaaa--tttaacaattataaacaccaatgaacctaacacagaccaccaaaatatatgcaac-aaaactgacagaaatgataggagaaacagatacttcaacagtaacactattgctgg-aacatcaatagcgcactttcagtaatgatggacagaaactgccttacatgcctagaaccagtaagtttcccagtctttgacaaggggcccagtatgccctccacactgagccagacagtttacaactctgcagtattctt--------cacttcctgtttgtacagagcctcaaggttagccaggagagagagcttagggccttctaatctaatgctttcttttaagcatgcaggttagcctagattcccaggaatatattgagtttttttataaagcctcatatttcattccccagccttttaagcttttttggttagcctgttgagttcctaaactgttgcctaatgcctcaggcacctgggatatttaataattgcccctgatttttttttttaaacaaactttccctgggaaatgggaaatggctggctgtacttggtgagctcggaggtaggtcaaatacaaccacataagtggggccttgtgtgtaaccatgtaaaaggtcaagtaatgacaattcgttgaggatggggcttgagctccaactgttttgtcctttcagtggcttccaggctgctaatttttgctgtgatgcaggttgctggttttcagggttgtagtagagctagggaggaaggtatg-aaataatacaaattaaaaggccacaaagaatgttgttcttaccaagatgcagctatcttgtttttattttttaaacaaatactccccagatttctgcaagcttttggtttaatttccagagttctgacaaagtttattgtgacaatttttttgctagtgttctcattggtttttatgtaggaagaatttcagaggtccttattctgccatttcactaatattacccTGATCAttgattttattttattttcatttatttatttaatgtatagaacaagatgacagtatcaggaaggaaactgtatacttgaacactataaaccaactagaacagacacaagatatttcaatcaacaaaagaagaatacataatcttaagtgtatatgaaatattctccaggacagaccatat----gttaggccatgaagtctcaataaatgtgaaatggctgaaatcatacaaagtacattctgcaaccacaaaagaacagaattagaagtcagtaacagaaggaaaactggaaaattctcaaaacgtggaaattaaacaacatactcttcatcaatggatcgaagaagaaatcacagggcaatgagaaaatactttgagataaagaaacacaccatactaaaacttatgtaatgcaatgaaaataatatttggaaagttgtgaaatcctatgttaaagattatgccgaatgtcgtagctcacacctgtaatcccagaactttaggaggctgaggtaggaggatcacttgagcccaggagtttgagacagcccaggcaacatagtgagagaccccgcctctacaaaaaaaatataaattagctaggcatggtggtgcacaactgtagtcccagctgctcaagaggctgaggtgggaggattgcttgagcctgggaggtcgtggctgcagtgagctgtgatcacgccactgcactccagcctgggcaacagagcgagagcctgtctcagaaaaaaaaataataataacaatagtaattaaatatcaataacctaatattctacctaaagaaactagaaaaaataaacacaaagcaagtagaggaagcaacaaagattaaagtcaaaataatgtctagaaaaactataaaaaaaaaac-cagaagttggttctttgaaaaacatctgcaaaactgataaaccttgagctagattaaccaagaagaaatgaaagtgggtacaatactaccaaccttacagaaagaaaaaaagaatataaattactatgggctggctgcaatggctcatgcctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggttgggagttcgatatcagcccaaccaacatggaaaaactccgtctctactaaaaatacaaaattagccaggcatggtggcgcatgcctggaatatcagctacttgggaggctgaggtgggagaatcgtttgaacctgggaggcagaggttgcggtgagccgagttcgccccactgcactccagcctaggcaacaacagcaaaactccgtggc
i gorGor5.CYUI01015556v1    C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22299130 1245 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e nomLeu3.chr6               17261729 6890 - 121039945 I
e saiBol1.JH378108           50529456 7552 +  54856640 I

a score=285567.000000
s hg38.chr15_KI270850v1_alt    399165 538 +    430880 aaaaaaaaaaaaaaaaaatt-actatgaataattatatgcctgcaaattagaaaacataggtgaaataaattctacagccagaaattaccaaaactaactcaaagaaacagacaatctgcatacgcttttaatgaacaaaaagcctgtattagtcatcaacaaacttcccagagaatagtccaagacaagaaagcttcgctggtgaattctaccaaaaacctaaaaaagaataaataccaattattcacatgtacttttccaaaaagcagacgaggagggaacactttacaactcagtcatgaagcaagtatttccctgataccaaaatcaggcagagaccacaagaaaacaaaatcatagacctatctgtttattaatctaaatgcagtggcatctaagatggattacacactatgaccaaatggggtttatcctaagaagacaaggttggttcattataagaaaaaaaa----tcaataaaatataatattaatagaacaaaagt-aaaaaaaaatcacatgatcatctcaatggacacaga
s panTro5.chr15              63551891 542 +  83230942 aaaaaaaaaaaaaaaaaatt-actatgaataattatatgcctgcaaattagaaaagataggtgaaataaattctacagccagaaattaccaaaactaactcaaagaaacagacaagctgcatacgcttttaatgaacaaaaagcctgtattagtcatcaacaaacttcccagagaatagtccaagacaagaaagcttcgctggtgaattctaccaaaaacctaaaaaagaataaataccaattattcacatgtactttttcaaaaagcagatgagaagggaacactttacaactcagtcatgaagcacgcatttccctgataccaaaatcaggcagagaccacaagaaaacaaaatcatagacctatctgtttattaatctaaatgcagtggcatctaagatggattacacactatgaccaaatggggtttatcctaagaagacaaggttggttcattataagaaaaaaaaaaaatcaataaaatatattattaatagaacaaaagt-aaaaaaaaatcacatgatcatctcaatggacacaga
i panTro5.chr15             I 10 C 0
s panPan2.chr15              80509247 539 +  99763055 aaaaaaaaaaaaaaaaaattaactatgaataattatatgcatgcaaattagaaaagataggtgaaataaattctacagccagaaattaccaaaactaactcaaagaaacagacaagctgcatacgcttttaatgaacaaaaagcctgtattagtcatcaacaaacttcccagagaatagtccaagacaagaaagcttcgctggtgaattctaccaaaaacctaaaaaagaataaataccaattattcacatgtactttttcaaaaagcagacgaggagggaacactttacaactcagtcatgaagcaagcatttccctgataccaaaatcaggcagagaccacaagaaaacaaaatcatagacctatctgtttattaatctaaatgcagtggcatctaagatggattacacactatgaccaaatggggtttatcctaagaagacaaggttggttcattataagaaaaaaaa---atcaataaaatatattattaatagaacaaaagt--aaaaaaaatcacatgatcatctcaatggacacaga
i panPan2.chr15             I 389 C 0
s gorGor5.CYUI01015556v1       109076 534 -   1709092 ---aaaaaaaaaaaaaaatt-actatgaataattatatgcctgcaaattagaaaacataggtgaaataaatcctacagccagaaattaccaaaactaactcaaagaaacagacaatctgcatacgcttttaatgaacaaaaagcctgtattagtcatcaacaaacttcccagagaatagtccaagacaagaaagcttcgctggtgaattctacc-aaaacctaaaaaagaataaataccaattattcacatgtacttttccaaaaagcagacgaggagggaacactttacaactcagtcaagaagcaagtatttccctgataccaaaatcaggcggagaccacaagaaaac-aaatcatagacctatctgtttattaatctaaatgcagtggcatctaagatggattacacactatgaccaaatggggtttatcctaagaagacaaggttggttcattataagaaaaaaaa----tcaataaaatataatattaatagaacaaaagtaaaaaaaaaatcacatgatcatctcaatggacacaga
i gorGor5.CYUI01015556v1    C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22299130 1245 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e nomLeu3.chr6               17261729 6890 - 121039945 I
e saiBol1.JH378108           50529456 7552 +  54856640 I

a score=45327.000000
s hg38.chr15_KI270850v1_alt    399703 54 +    430880 caagtatttgatgaaaatccaataccctttcatgataaaaatattcaataaact
s panTro5.chr15              63552433 54 +  83230942 caagtatctgatgaaaatccaatacccttttatgataaaaatattcaataaact
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80509786 54 +  99763055 caagtatttgatgaaaatccaatacccttttatgataaaaatattcaataaact
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       109610 54 -   1709092 caagtatttgatgaaaatccaataccctttcataataaaaatattcaataaact
i gorGor5.CYUI01015556v1    C 0 C 0
s calJac3.chr6               22300375 54 + 158406734 caagtactttatgaaaatccaatatccttgcatgataaaaacattcaataaact
i calJac3.chr6              I 1245 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e nomLeu3.chr6               17261729 6890 - 121039945 I
e saiBol1.JH378108           50529456 7552 +  54856640 I

a score=1426806.000000
s hg38.chr15_KI270850v1_alt    399757 1289 +    430880 aggaatagaaaaaaacat------cctcaggccgggcccggtcactcacgcctgtaatcccagcactttgggaggccaaggccggtggatcacctgaggtcaggagttggagtccaggctgaccaacatcatgaaatcccatctctactaaaaatacaaaaattagcctggcatggtggcgcacacctgtaatcccagctactctggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgtagtgagccaagatcacgccactgcacttcagccttgggg-acagagtgagactcc---------------------agtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaagaaaaaaaaatcctcaacttgataaagggctcctacaaaaacacccacatctaacatcatatttaatggtgaatgaa-------------------------gtctgctctcttcacttctattcaaaactgtactgaagattttagccagcacaattaggaaggaaaatgaaacaaaaggcatctagatggaaaaa-aaagtaaaactatctttatagatgatacacccagaaggcatgatcttagatgt-aaaaaatcctaagaaatcac----acacacaaaaatccatgtacaaaaaccagctctatttctatacactagcaatgaacaatctgaaaataaaatt---aacagtttgacttacaatagcatgaaaaataaatatacttatgaataaattgcaagacttggacactgaaaactgtaagaaatcactgaaataaattaaaacaaaaa-aaatccccaattcatgcattagaagacttaatattgttaagatggcaataGTAggccaggcacagtggctcatgcttataatctcaacgctttgggaggctgaggcaggaggaccctttgagaccaggagttcaagaccagcctggccaacatagcaagaccccatctctacaaaaaaata----aaaataaaaattagccagcagccacggtggcacacacctgcagtccctgatactcaagaggctgaggcaggaagatcacttgagcccaagaAATCACGTCTCAAaa----------------aaaagaaaacccc-----aaaaaacaaaaacacgatgatctaataattttcatctcaataagttt--aaaaaaaacacacagtaaatcaaacccaaagaaaacaataggaaaaa-aaataaatgacacataaaagaaatgtataacagaatcgggggagggagggatcaaagccaaaagtttattt--taaaaaaaagattagtaacacagac---aaaAAAAAGCAAACGTAATGTTAAGAAAT
s panTro5.chr15              63552487 1269 +  83230942 aggaatagaaaaaaacat------cctcaggccgggcccggtcactcacgcctgtaatcccagcactttgggaggccaaggccggtggatcacctgaggtcaggagttcgagtccagcctgaccaacatcatgaaatcccatctctactaaaaatacaaaaattagcctggcatggtggcacgcacctgtaatcccagctactctggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgtagtgagccaagatcatgccactgcacttcagccttgggg-acagagtgagactcc---------------------agtctcaaaaaaaaaaaaaaaaagaaaagaaaaaaa-gaaaaaaa-------aaatcctcaacttgataaagggctcctacaaaaacacccacatctaacatcatatttaatggtgaatgaa-------------------------gtctgctctcttcacttctattcaaaactgtactgaagattttagccagcacaattaggaaggaaaatgaaacaaaaggcatctagatggaaaaa-aaagtaaaactatctttatagatgatacacccagaaggcatgatcttagatgt-aaaaaatcctaagaaatcac----acacacaaaaatccatgtacaaaaaccagctctatttctatacactagcaatgaacaatctgaaaataaaatt---aacagtttgacttacaatagcatgaaaaataaatatacttatgaataaattgcaagacttggacactgaaaactataagaaatcactgaaataaattaaaacaaaaa-a--tccccaattcatgcattagaagacttaatattgttaagatggcaataGTAggccaggcacagtggctcatgcttataatctcaacgctttgggaggctgaggcaggaggaccctttgaggccaggagttcaagaccagcctggccaa--------gaccccatctctacaaaaaaata----aaaataaaaattagccagcagccacagtggcacacacctgcagtccctgatactcaagaggctgaggcaggaagatcacttgagcccaagagatcgTGTCTCAAAA----------------AAAAGAAAACCCC-----AAAAAACAAAAACACAATGATCTAATAATTTTCATCTCATTAAGTTT--AAAAAAAACACACAGTAAATCAAACCCAAAGAAAACAATAGGAAAAA-AAAAAA--GACACATAAAAGAAATGTATAACAGAATCGGGGGAGGGGGGGATCAAAGCCAAAAGTTTATTT--AAAAAAAAAGATCAGTAACACAGAC---AAAAAAAAGCAAACGTAATGTTAAGAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80509840 1292 +  99763055 aggaatagaaaaaaacat------cctcaggccgggcccggtcactcacgcctgtaatcccagcactttgggaggccaaggccggtggatcacctgaggtcaggagttcgagtccagcctgaccaacatcatgaaatcccatctctactaaaaatacaaaaattagcctggcatggtggcacgcacctgtaatcccagctactctggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgtagtgagccaagatcacgccactgcacttcagccttgggg-acagagtgagactccannnnnnnnnnnnnnnnnnnnaagtactacaaaaaaaaaaaaaaaaaaagaaaaaaa-gaaaaaaa-------aaatcctcaacttgataaagggctcctacaaaaacacccacatctaacatcatatttaatggtgaatgaa-------------------------gtctgctctcttcacttctattcaaaactgtactgaagattttagccagcacaattaggaaggaaaatgaaacaaaaggcatctagatgg-aaaa-aaagtaaaactatctttatagatgatacacccagaaggcatgatcttagatgt-aaaaaatcctaagaaatcac----acacacaaaaatccatgtacaaaaaccagctctatttctatacactagcaatgaacaatctgaaaataaaatt---aacagtttgacttacaatagcatgaaaaataaatatacttatgaataaattgcaagacttggacactgaaaactataagaaatcactgaaataaattaaaacaaaaa-a--tccccaattcatgcattagaagacttaatattgttaagatggcaatagtaggccaggcacagtggctcatgcttataatctcaacgctttgggaggctgaggcaggaggaccctttgaggccaggagttcaagaccagcctggccaacatagcaagaccccatctctacaaaaaaata----aaaataaaaattagccagcagccacagtggcacacacctgcagtccctgatactcaagaggctgaggcaggaagatcacttgagcccaagagatcgTGTCTCAAAA----------------AAAAGAAAACCCC-----AAAAAACAAAAACACAATGATCTAATAATTTTCATCTCATTAAGTTT---AAAAAAACACACAGTAAATCAAACCCAAAGAAAACAATAGGAAAAA-AAAT----GACACATAAAAGAAATGTATAACAGAATCGGGGGAGGGGGGGATCAAAGCCAAAAGTTTATTT---AAAAAAAAGATCAGTAACACAGAC----AAAAAAAGCAAACGTAATGTTAAGAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       109664 1275 -   1709092 aggaatagaaaaaaacat------cctcaggccaggcccggtcgctcatacctgtaatcccagcactttgggaggccaaggccagtggatcacctgaggtcaggagtttgagtccagcctgaccaacatcatgaaatcccatctctactaaaaatacaaaaattagcctggcatggtggcgcacacctgtaatcccagctactctggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgtagtgagccaagatcatgccactgcacttcagccttgggg-acagagtgagactcc---------------------agtctcaaaaaaaaaaaga------------------aaaaaaaa-------aaatcctcaacttgataaagggctcctacaaaaacacccacatctaacatcatatttaatggtgaatgaa-------------------------gtctgctctcttcacttctattcaaaactgtactgaagattttagccagcacaattaggaaggaaaatgaaacaaaaggcatctagatggaaaaa-aaagtaaaactatctttatagatgatacacccagaaggcatgatcttagatgt-aaaaaatcctaagaaatcac----acacacacaaatccatgtacaaaaaccagctctatttctatacactagcaatgaacaatctgaaaataaaatt---aacagtttgacttacaatagcacgaaaaataaatatacttatgaataaattgcaagagttggacactgaaaactgtaagaaatcactgaaataaattaaaacaa-------tccccaattcatgcattagaagacataatattgttaagatggcaatagtaggccaggcacagtggctcatgcttataatctcaacgctttgggaggctgaggcaggaggacccttcgaggccaggggttcaagaccagcctggccaacatagcaagaccccatctctacaaaaaaata----aaaataaaaattagccagcagccacggtggcacacacctgcagtccctgatactcaagaggctgaggcaggaagatcacttgagcccaagagatcgCGTCTCaaaaaaaaaaaaaaaaaaagaaaagaaaacccccaaaaaaaaaacaaaaaCACAATGATCTAATAATTTTCATCTCAATAAGTTA--AAAAAAAACACACAGTAAATCAAACCCAACGAAAACAATAGGAAAAA-AAATAAATGACACATAAAAGAAATGTGTAACAGAATCGG----GGGGGGAATCAAAGCCAAAAGTTTATTT--TAAAAAAAAGATTAGTAACACAGAC---AAAAAAAAGCAAACGTAATGTTAAGAAAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17268619 1268 - 121039945 agaaagaaaaaagaatataaattactatgggctggctgcgatggctcatgcctgtaataccagcactttgggaggctgaggcgggtggatcagctgaggttgggagttcgagatcagcccaaccaacatggaaaaactccatctctactaaaaatac-aaaattagccaggcatggtggcacatgcctataatatcagctactccggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagtcaagatcatgccactgcacttcagcctgggggcacagagtgagactcc---------------------agtctcaaaaaaaaa----------------------aaaaaaaa-------aaaTccccaacttgataaagggctcctacaaaaacacccacatctaacatcatatttaatggtgaaagaa-------------------------gtctgctctcttcacttctattcaaaactgtactgaagattttagctagcacaattaggaaggaaaatgaaacaaacggcatctagatggaaaaa-aaggtaaaactatctttgtagatgatacacccagaaggcatgatcttggatgt-aaaaaatcctaagaaatcacaaatacacacaaacatctatgtacaaaaaccagctctatttcta-acactagcaatgaacaatctgaaaataaaatt---aacagtttgacttacaatagcattaaaaataaatatacttaggaataaattgcaagacttgaacactgaaaac--taaaaaatcactgaaataaattaaaacaaagaca--tccccgattcatgcattagaagacttaatattgttaagatggcaataGCAggccaggcagagtggctcatgcttataatctcaacgctttgggaggctgaggcaggaggaccctttgaagccaggagttcaagaccagcctggccaacacagcaagaccccatctcta-aaaaaaataaaataaaataaaagttggccagcagccacggtggcacacgcctgcagtccctgatactcaagaggctgaggcaggaagatcacttgagcccaagagatcgCGTCTCAAAGAAAAAaaaaa------aaaagaaaacccc-----aaaaaaca--------atgatttaataattttcatctcagtaagtttaaaaaaaaaaaacacagtaaatcaaacccaaagaaaacaataggaaaaa-aaataaatgacacataaaagaaatgtgtaacagaat-------ggggggagtcaaagccaaaagtttattaaaaaaaaaaaagattagtaaCACAGAC---AAAAAAAAGCAAATGTAATGTTAAGAAAT
i nomLeu3.chr6              I 6890 C 0
s calJac3.chr6               22300429 1228 + 158406734 aggaatagaaaaaaa-at------cctt-gaccaggcacggtggctcctatctgtaatcctagcactttgggaagtcaaggt--gaggatcacctaaggtcaagaatttaagtccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaatcagacagacgtggtggcgtgtatctgcaatccctgctactctgtaggctgaggcaggagaactgcttgaactcgggaggcagaggttgcagtgagccgagattgcgccactg-----cagcctggcca-acagagcaaaactcc---------------------agtc--------aaa----------------------agaaagaa-------acatcttcaacttggtaaccggctcctacaaaaacacccacatctaacatcatatttaatggtgaaagacaaagtttttggaaacaagacaagatgtctgctctcttcgcttttattcaaaactgtactaaagattttacccagcacaattaggtaggaaaatgaaacagaaggcatctagatgaaaaaacaaaacaaaacta------tagatgatacacccagaaagcatgatcttggatgtgaaaaaatcctaagaaatcac----acacac------------------accagctatatttctatacactagcaatgaacaacctgaaaatgaaattgagaacagtttcacttgcagtagcatcaaaaataaatatgcttatgaataaattgaaagacgtgtacactgaaaattttaagtaatcactgaaagaaattaaataagagaca--accttgattcatgcattagaagacttaatattgttaagatggcaataGTAggccaggcacagtggttcatgcttataatctcaacactctgggaggccgaggtaggagggccctttgaggccaggagttcaagaccagcctggccaacatgacaaggccccatctctagaaaaaaata----aaaataaaaattagc---cagccatagtggcacatgcctgcagtccctgctactcaagaggctgaggcaggaggatcacttgag--------ATCACATCTCAA------------------ACAAAAAAACCCC------aaaaacaaaaatacaatgatttaataattttcatctcagtaagttt------aaaaaacacagtaaattaaaaccaaagaaagcaataggaaaaataaataaatgacacataaaagcaatgtatagtagaat------agggtgggattgaagccaaaagcttattt--taaaaaaaagattagtaagaCAGACCAAAAAAAAAAGCAAATTTAATGTCAAGAAAT
i calJac3.chr6              C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e saiBol1.JH378108           50529456 7552 +  54856640 I

a score=103203.000000
s hg38.chr15_KI270850v1_alt    401046 123 +    430880 ACTGGAAATTTtgtaatcccagcactttgggaagccgaggtgggcagatcatg-aggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctccactaaaaaaaaa------tacaaaaa
s panTro5.chr15              63553756 125 +  83230942 ACTGGAAATTTtgtaatcccagcactttgggaagccgaggtgggcagatcatg-aggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctccattaaaaaaaaa----aatACaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80511132 129 +  99763055 ACTGGAAATTTtgtaatcccagcactttgggaagccaaggtgggcagatcatg-aggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctccattaaaaaaaaaaaataacaaaaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       110939 124 -   1709092 ACTGGAAATTTtgtaatcccagcactttgggaagccgaggtgggcagatcattcatgtcaggagatcgagaccatcctggctaacacggtgaaacaccgtctccactaaaaaaaaa------tacaaaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17269887 123 - 121039945 ACTGGAAACTTtgtaatcccagcactttgggaagccaaggtggggggatcacg-aggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctccactaaaaaaaaa------tacaaaaa
i nomLeu3.chr6              C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22301657   0 + 158406734 C
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e macFas5.chr7              108463591 9271 - 171882078 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e saiBol1.JH378108           50529456 7552 +  54856640 I

a score=2283.000000
s hg38.chr15_KI270850v1_alt    401169 6 +    430880 aATAAG
s panTro5.chr15              63553881 6 +  83230942 aataag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80511261 6 +  99763055 ataaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       111063 6 -   1709092 aAAAAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17270010 5 - 121039945 a-tAAG
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108472862 6 - 171882078 aaaaaa
i macFas5.chr7              I 9271 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22301657 0 + 158406734 C
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e chlSab2.chr29              21153321 9866 -  24206276 I
e cerAty1.NW_012002657v1        72328 9775 -   1987038 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e saiBol1.JH378108           50529456 7552 +  54856640 I

a score=13275.000000
s hg38.chr15_KI270850v1_alt    401175 11 +    430880 AT-AAAATAAAA-------
s panTro5.chr15              63553887 16 +  83230942 at-aaaataaaa--taaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80511267 19 +  99763055 ataaaaataaaaataaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       111069 16 -   1709092 AT-AAAATAAAA--TAAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17270015 11 - 121039945 AT-AAAATAAAA-------
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108472868 11 - 171882078 at-aaaataaat-------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1        82103 11 -   1987038 at-aaaataaat-------
i cerAty1.NW_012002657v1    I 9775 C 0
s chlSab2.chr29              21163187 11 -  24206276 at-aaaataaat-------
i chlSab2.chr29             I 9866 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22301657  0 + 158406734 C
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e saiBol1.JH378108           50529456 7552 +  54856640 I

a score=376222.000000
s hg38.chr15_KI270850v1_alt    401186 125 +    430880 ACTGGAAATTCTAAAACATCAGAAGAAGCTTTTACataaacatttatgccaatgaatttgaaaatttaaatgaaacagagaaattcctagaaaaacacaacttagcaaaacttagaagacggaat
s panTro5.chr15              63553903 123 +  83230942 ACTGGAAATTCTaaaacatcagaagaagcttttacataaacatttatgccaatgaatttgaaaatttaaatgaaacaga--aattcctagaaaaacacaacttagcaaaacttagaagacggaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80511286 123 +  99763055 ACTGGAAATTCTaaaacatcagaagaagcttttacataaacatttatgcccatgaatttgaaaatttaaatgaaacaga--aattcctagaaaaacacaacttagcaaaacttagaagacggaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       111085 125 -   1709092 ACTGGAAATTCTGAAACATCAGaagaagcttttacataaacatttatgccaatgaatttgaaaatttaaatgaaatggagaaattcctagaaaaacacaacttagcaaaacttagaagacggaat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17270026 125 - 121039945 GCTGAAAATTCTaaaacatcagaagaagcttttacataaacatttatgccaatgaatttgaaaatttaaatgaaatggagaaattcctagaaaaacacaacttagcaaaacttagaagacggaat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108472879 125 - 171882078 actggaaattctaaaacatcagaagaagcttttacataaacttttatgccaatgaatttgaaaatttaaatgaaatggagaaattcctagaaaaacacaacttagcaaaacttagaagaagaaat
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1        82114 125 -   1987038 actggaaattctaaaacatcagaagaagcttttacataaacttttatgccaatgaatttgaaaatttaaatgaaatggagaaattcctagaaaaacacaacttagcaaatcttagaagaagaaat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21163198 125 -  24206276 actggaaattctaaaacatcagaagaagcttttacataaacttttatgccaatgaatttgaaaatttaaatgaaatggagaaattcctagaaaaacacaacttagcaaaacttagaagaagaaat
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22301657 123 + 158406734 ACTGGAAATTCTAAAACATTAGaagaggcttttacattaacatttatgc--atgaatttgaaaatttaaatgaaacaaagcaattcctagaaaaacacaatttagcaaaacttagaagaagaaac
i calJac3.chr6              C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e saiBol1.JH378108           50529456 7552 +  54856640 I

a score=48944.000000
s hg38.chr15_KI270850v1_alt    401311 19 +    430880 agaaatttgagccaggtgc
s panTro5.chr15              63554026 19 +  83230942 agaaatttgagccaggtgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80511409 19 +  99763055 agaaatttgagccaggtgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       111210 19 -   1709092 agaaatttgagacacgtgc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17270151 19 - 121039945 agaaTTTTGAGAcgggtgc
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108473004 19 - 171882078 agaaattcgagccaggtgc
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1        82239 19 -   1987038 agaaattcgagccaggtgc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21163323 19 -  24206276 agaaattcgagccaggtgc
i chlSab2.chr29             C 0 C 0
s calJac3.chr6               22301780 19 + 158406734 agaaaGCTGggccgagttt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50537008 17 +  54856640 --aaaaattagctgggcat
i saiBol1.JH378108          I 7552 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=615429.000000
s hg38.chr15_KI270850v1_alt    401330 277 +    430880 ggtggctcatgcctataatcccagcactttggaaagctgaggcgggtggattgcctgaggtcaggagttcgaga-------------------------------ccagcctgcctaacatg-gtgaaaccccatctc------------tactaaaaatacaaaaa-------------------------------------------------------------------ttagccagccatggtggagcacccctg-------tagtcccagctacttgggaggctgaggcaggagaatcgcttgagcccgggaggcagaggttgtagtgagctgagatcacactattgcattccagcctgggtaacagagcgagagtctgtccaaaaaa
s panTro5.chr15              63554045 276 +  83230942 ggtggctcatgcctataatcccagcactttggaaagctgaggcgggtggattgcctgaggtcaggagttcgaga-------------------------------ccagcctggctaacatg-gtgaaaccccatctc------------tactaaaaatacaaaaa-------------------------------------------------------------------ttagccagccatggtggagtacccctg-------cagtcccagctacttgg-aggctgaggcaggagaatcgcttgagcccgggaggcagaggttgtagtgagctgagatcatactattgcattccagcctgggtaacagagcgagagtctgtccaaaaaa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       111229 267 -   1709092 ggtggctcatgcctataatcccagcactttggaaagctgaggcgggcggactgcctgaggtcaggagttcgaga-------------------------------ccagcctggctaacatg-gtgaaaccccatctc------------tactaaaaatacaaaaa-------------------------------------------------------------------ttagccagccatggtggagcacccctg-------tagtcccagctacttgggaggctgaggcaggagaatcacttgagcccgggaggcagaggttgtagtgagctgagatcatactattgcattccagcctgggtaacagagcgagagtcc----------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17270170 272 - 121039945 ggtggctcatgcctataatcccagcactttggaaagctgaagcgggcggattgcctgaggtcaggagttcgaga-------------------------------ccagcctggctaacatg-gtgaaaccccatctc------------tactaaaagtacaaaaa-------------------------------------------------------------------ttagccagccatggtggagcacccctg-------tagtcccagctacttgggaggctgaggcaggagaatctcttgatcccaggaggcagaggatacagtgagctgagatcatactattgcactccatcctgggtgacagagcgagagtctgtccc-----
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108473023 273 - 171882078 agaggctcacgcctataaccccagcactctgggaggctgaggtgggcagattacctgaggtcaagagttcgaga-------------------------------ccagcctggctaacatg-gtgaaatcccatctc------------tactaaaaatacaaaaa-------------------------------------------------------------------ttagccaggcgtggtggagcacccctg-------tagtcccagctacttgggaggcagaggcaggagaatcgcttgagcccaggaggcagaggttgcagtgagctgagatcacactactgcactccagcctgggcgacagagtgagagtctgtcttt----
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1        82258 277 -   1987038 agaggctcatgcctataaccccagcactctgggaggctgaggtgggcagattacctgaggtcaagagttcgaga-------------------------------ccagcctggctaacatg-gtgaaatcccatctc------------tactaaaaatacaaaaa-------------------------------------------------------------------ttagccaggcgtggtggagcacccctg-------tagtcccagctacttgggaggcagaggcaggagaatcacttgagcccaggaggcagaggttgcagtgagctgagatcacactactgcactccagcctgggcgacagagtgagagtctgtctttaaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21163342 272 -  24206276 agaggctcatgcctataaccccagcactctgggaggctgaggtgggcagattacctgaggtcagcagttcgaga-------------------------------ccagcctggctaacatg-gtgaaatcccatttc------------tactaaaaatacaaaaa-------------------------------------------------------------------ttagccaggcgtggtggagca-ccctg-------tagtcccagctacttgggaggcagaggcaggagaatcgcttgagcccaggaggcagaggttgcagtgagctgagatcacactactgcactccagcctgggcgacagagtgaga----gtctttaaaa
i chlSab2.chr29             C 0 I 2
s calJac3.chr6               22301799 284 + 158406734 ggtggctcatgcctataataccagcattttgagaggcagagatgggcagattgcctgaggtcaggagtttgaga-------------------------------ctagcctggctaatact-gtaaaaccccatctc------------tactaaaaacataaaaa-------------------------------------------------------------------ttaaccaggcgtggtggagcacctctggctaatttagtcccagctacttgggaggccgaagcaagagaatcgcttgaacccaggaggcagaagtttcagttagctgagatcacgccattgtacttcagcctaggcaatagcgtgtgactccatttcaaaaa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50537025 357 +  54856640 ggtggcacgtgcctgtagtcccagctactcaggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcggtgagcccagatggcgccattgcactccagcctgggtaacaagagcgacactctgtctcaaaaaaacaaaaaacaaaaaacaaaaaaaacaaaaaaacaaaaaaacaaaacaaacaaaaacaaaacagaaATTTTGATAATTATATTTTAAAAACTGgactgggcatggaggctcatacttg-------taatcctagcactttaggaggccaaggctgggga-------gaatcatgagatcaggagttcaag------------------------accagcctggccaagatggtgaaaccccattcctacaa
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e panPan2.chr15              80511428   0 +  99763055 C
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e manLeu1.NW_012106908v1        90086 15742 -   1397330 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=150450.000000
s hg38.chr15_KI270850v1_alt    401607 63 +    430880 aaaaaaacaaaaaaaaaaacacagaaatttgaataattgtattttaaaaactgggtcaggcaa
s panTro5.chr15              63554321 62 +  83230942 aaaaaaa-aaaaaaaaacacacagaaatttgaataattgtattttaaaaactgggtcaggcaa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       111496 61 -   1709092 -aaaaaa-aaaaaaaaaaacacagaaatttgaataattgtattttaaaaactgggtcaggcaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17270442 61 - 121039945 -tgaaaa-aaaaaaaaaaCCACAGAAATTTGGATAATTGTATTGTAAAAACTGggtcaggcat
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108473296 60 - 171882078 --aaaaa-aaaaaaaaagacacagaaatttggataattgtgttttaaaaactgggccaggcat
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1        82535 60 -   1987038 --aaaaa-aaaaaaaaagacacagaaatttggataattgtgttttaaaaactgggccaggcat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21163616 62 -  24206276 aaaaaaa-aaaaaaaaagacacagaaatttggataattgtgttttaaaaactgggccaggcat
i chlSab2.chr29             I 2 C 0
s manLeu1.NW_012106908v1       105828 62 -   1397330 aaaaaaa-aaaaaaaaaGACACAGAAATTTGGATAATTGTGTTTTAAAAACTGggccaggcat
i manLeu1.NW_012106908v1    I 15742 C 0
s calJac3.chr6               22302083 61 + 158406734 -aaaaaa-aacaaaatcaaaacagaaaTTTTGATAATTATATTTTTAAAACTGggctgggtgt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50537382 24 +  54856640 -aaag--------------------------------------ttcataaattggccgggtac
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e panPan2.chr15              80511428  0 +  99763055 C
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=677617.000000
s hg38.chr15_KI270850v1_alt    401670 171 +    430880 ggtggctcacacctg-taatcccagcactttgggagtccaaggc--gggtgggt--catgaggtcagaagttcaagatcagcctggccaagatggtgaaaccccatctctat-----------taaaaa-tacaaaaattagctgggca-ggtggcaggcgcctgtaatcccagctactcaggaggctg
s panTro5.chr15              63554383 172 +  83230942 ggtggctcacacctg-taatcccagcactttgggagtccaaggc--gggtgggt--catgaggtcagaagttcaagatcagcctggccaagatggtgaaaccccatctctac-----------taaaaaatacaaaaattagctgggca-ggtggcaggcgcctgtaatcccagctactcaggaggctg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80511428 174 +  99763055 ggtggctcatgccta-taatcccagcactttggaaagctgaggc--gggtggattgcctgaggtcaggagttcgagaccagcctggccaagatggtgaaaccccatctctac-----------taaaaaatacaaaaattagctgggca-ggtggcaggcgcctgtaatcccagctactcaggaggctg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       111557 171 -   1709092 ggtggctcacacctg-taatcccagcactttgggagtccaaggc--gggtgggt--catgaggtcaggagttcaagatcagcctggccaagatggtgaaaccccatctctac-----------taaaaa-cacaaaaattagctgagca-ggtggcaggcgcctgtaatcccagctactcaggaggctg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17270503 171 - 121039945 ggtggctcacacctgttaatcccagcactttgggagtccaaggc--gggtggat--catgaggtcaggagttcaagatcagcctggccaa-atggtgaaaccccatctctac-----------taaaca-tacaaaaattagctgggca-ggtggcaggtgcttgtaatcccagctactcaggaggctg
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108473356 172 - 171882078 ggtggctcacacctg-taatcccagcactttgggagtccaaggt--gggtggat--catgaggtcaggagttcaagatcagtatggccaagatggtgaaactccatctctac-----------taaaaa-tacaaaaattagccaggtgtggtggcaggttcctgtaatcccagctactcgggctgctg
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1        82595 172 -   1987038 ggtggctcacacctg-taatcccagcactttgggagtccaaggt--gggtggat--catgagatcaggagttcaagatcagtatggccaagatggtgaaactccatctctac-----------taaaaa-cacaaaaattagccaggtgtggtggcaggctcctgtaatcccagctactcgggctgctg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21163678 172 -  24206276 ggtggctctcacctg-taatcccagcactttgggagtccaaggt--gggtggat--catgaggtcaggagttcaagatcagtatggccaagatggtgaaactccatctctac-----------taaaaa-tacaaaaattagccaggtgtggtggcaggctcctgtaatcccagctactcgggctgctg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       105890 172 -   1397330 ggtggctcacacctg-taatcccagcactttgggagtccaaggt--gggtagat--catgaggtcaggagttcaagatcagtatggccaagatggtgaaactccatctctac-----------taaaaa-tacaaaaattagccaggtgtggtggcaggctcctgtaatcccagctactcgggctgctg
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22302144 173 + 158406734 ggaggctcatgcttg-taatcctagcactttaggaggtcaaagttggggaaaat--catgagatcaggagttcaagaccagcctggccaagatggtgaaacccagtccctac-----------aaaaag-tacataaattggccgggtacagtggcccatgcctgtaatcccaga-atttgggaggccg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50537406 182 +  54856640 agtggcccatgcctg-taatcccag-aatttaggaggctgaggt--gggtggat--catgaggtcaggtgttcaagaccagcctggccaagatgctgaaagcccgtctctactacaattaccaaaaaaa-aaaaaaaattagccaggtgaggtagcaggtacctgtaatcctatctacccaggaggctg
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e colAng1.NW_012117110v1       100570 2934 -   1784207 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=397091.000000
s hg38.chr15_KI270850v1_alt    401841 111 +    430880 aggcaggagaatcgcttgaacctgggggg-cggaggttg-------cagtaagccaagactgcaccactgcactccagcctgggcaa----catagtgagactctgtctc-aaaaaaaaGaaca
s panTro5.chr15              63554555 112 +  83230942 aggcaggagaatcgcttgaacctgggggggcggaggttg-------cagtaagccaagactgcaccactgcactccagcctgggcaa----catagtgagactctgtctc-aaaaaaaagaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80511602 110 +  99763055 aggcaggagaatcgcttgaacctgggggg-cggaggttg-------cagtaagccaagactgcaccactgcactccagcctgggcaa----catagtgagactctgtctc-aaaaaaaagaa-a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       111728 112 -   1709092 aggcaggagaatcgcttgaacctgggggg-cggaggttg-------cagtaagccaagactgcaccactgcactccagcctgggcaa----cacagtgagactctgtctcaaaaaaaaagaaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17270674 111 - 121039945 aggcaggagaatcgcttgaacctggggga-tggaggttg-------cagtaagccaagactgtaccactgcactccagcctgggcaa----cacaataagactctgtctc-aaaaaaaagaaaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108473528 100 - 171882078 aggcaggagaatcgcttgaacctgggggg-cggaggtta-------cagtaagccaagactgtaccactgcactccagcctgggcaa----tacagtgagactctgtctc-a-----------a
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1        82767 100 -   1987038 aggcaggagaatcgcttgaacctgggggg-cggaggttg-------cagtaagccaagactgtaccactgcactccagcctgggcaa----cacggtgagactctgtctc-a-----------a
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21163850 100 -  24206276 aggcaggagaatcgcttgaacctgggggg-tggaggttg-------cagtaagccaagactgtaccactgcactccagcctgggcaa----cacagtgagactctatctc-a-----------a
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       106062 100 -   1397330 aggcaggagaatcgcttgaacctgggggg-cggaggttg-------cagtaagccaagactgtaccactgcactccagcctgggcaa----cacagtgagactctgtctc-a-----------a
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       103504 111 -   1784207 aggcaggagaatcgcttgaacctgggggg-cggaggttg-------cagtaagccaagactgtaccactgcactccaacctgggcaa----cacagtgagactctgtctc-aaaaaaaaaaaca
i colAng1.NW_012117110v1    I 2934 C 0
s calJac3.chr6               22302317  78 + 158406734 aggcaggtggatca--tgaggtcaggtgt-tcaagaccagcctggccaagatggtgaaatcccgtccct--------------acaaaaagtaca-----------------------------
i calJac3.chr6              C 0 I 2976
s saiBol1.JH378108           50537588  69 +  54856640 aggcaggagaatcgcttgaactcgggtgg-cggaggttg-------cagtgagctgagatcatgccact--------------gcac----taca-----------------------------
i saiBol1.JH378108          C 0 I 2
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=194113.000000
s hg38.chr15_KI270850v1_alt    401952 81 +    430880 aacaaacaaacaaacaaacaaaacaaacaaac-aaaaaactgaatccacattttaaaaactgttcctcaa---aaaaacaaaaac
s panTro5.chr15              63554667 81 +  83230942 aacaaaccaacaaacaaaacaaaccaacaaac-aaaaaactgaatccacattttaaaaactgttcctcaa---aaaaacaaaaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80511712 81 +  99763055 aacaaaccaacaaacaaaacaaaccaacaaac-aaaaaactgaatccacattttaaaaactgttcctcaa---aaaaacaaaaac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       111840 79 -   1709092 aacaaacaaacaaaaaaaccaaa--aaaaaaa-aaaaaactgaatccacattttaaaaactgttcctcaa---aaaaacaaaaac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17270785 67 - 121039945 aacaaacaaa---------------aacaaacaaaaaAACTGAATCCACATTTTAAAAACTGTTCCTCAA---AAAAACAAAAAC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108473628 66 - 171882078 aaaaaacccaaaaa-----------acaaaac-aaaaaactgaatccacattttaaaaactcttcctcaa---aaaaacaa----
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1        82867 66 -   1987038 aaaaaacccaaaaa-----------acaaaac-aaaaaactgaatccacattttaaaaactcttcctcaa---aaaaacaa----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21163950 69 -  24206276 aaaaaacccaaaaa-----------acaaaac-aaaaaactgaatccacattttaaaaactgttcctcaaaacaaaaacaa----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       106162 66 -   1397330 aaaaaacccaaaaa-----------acaaaac-aaaaaaCTGAATCCACATTttaaaaactcttcctcaa---aaaaacaa----
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       103615 66 -   1784207 aaaaaacaaaaaaa-----------aaaaaac-aaaaaactgaatccacattttaaaaactgttcctcaa---aaaaacaa----
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50537659 23 +  54856640 -----------------------------------------------------------ctgTCCCTCAA---AAAAacaaaaac
i saiBol1.JH378108          I 2 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22302395 2976 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       670847 11173 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e rheMac8.chr7               60936974 10465 + 169600520 I

a score=51040.000000
s hg38.chr15_KI270850v1_alt    402033 10 +    430880 aaacaaaaac
s panTro5.chr15              63554748 10 +  83230942 aaacaaaaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80511793 10 +  99763055 aaacaaaaac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       111919 10 -   1709092 aaacaaaaac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17270852 10 - 121039945 AAACAAAAAC
i nomLeu3.chr6              C 0 I 3050
s macFas5.chr7              108473694 10 - 171882078 aaacaaaaac
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1        82933 10 -   1987038 aaacaaaaac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21164019 10 -  24206276 aaacaaaaac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       106228 10 -   1397330 aaacaaaaac
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       103681 10 -   1784207 aaacaaaaac
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107610v1       682020 10 -   2910086 AAacaaaaac
i cebCap1.NW_016107610v1    I 11173 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22302395 2976 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e saiBol1.JH378108           50537682  0 +  54856640 C

a score=426964.000000
s hg38.chr15_KI270850v1_alt    402043 116 +    430880 acactccaggcccaagtggcttcagcaatgaattatatcaaaatttaaggaagactattataaatttcacacaagctcttctcaagaacagc-gaggaaaaaaaaaa--act----tttcaag
s panTro5.chr15              63554758 115 +  83230942 acactccaggcccaagtggcttcagcaatgaattatatcaaaatttaaggaagactattataaatttcacacaagctcttctcaagaacagc-gaggaaaaaaaaaa---ct----tttcaag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80511803 115 +  99763055 acactccaggcccaagtggcttcagcaatgaattatatcaaaatttaaggaagactattataaatttcacacaagctcttctcaagaacagc-gaggaaaaaaaaaa---ct----tttcaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       111929 118 -   1709092 acactccaggcctaagtggcttcagcaatgaattatatcaaaatttaaggaagactattataaatttcacacaagctcttctcaagaacagc-gaggaaaaaaaaaaaaact----tttcaag
i gorGor5.CYUI01015556v1    C 0 C 0
s macFas5.chr7              108473704 114 - 171882078 acactccaggcccagatggcttcagcaatgaattataccaaaatttaagaaagactattataaattgcacacaagctcttcccaacaacaggtgggaaaaaaaaaaaaaacc----tt-----
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1        82943 113 -   1987038 acactccaggcccagatggcttcagcaatgaattataccaaaatttaagaaagactattataaatttcacacaagctcttcccaacaacagg-gggaaaaaaaaaaaaaacc----tt-----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21164029 109 -  24206276 acactccaggcccagatggcttcagcaatgaattataccaaaatttaagaaagactattataaatttcacacaagctcttcccaacaacagg-ggg----gaaaaaaaaacc----tt-----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       106238 110 -   1397330 acactccaggcccagatggcttcagcaatgaattataccaaaatttaagaaagactattataaatttcacacaagctcttcccaacaacagg-ggg---aaaaaaaaaaacc----tt-----
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       103691 117 -   1784207 acactccaggcccaggtggcttcagcaatgaattataccaaaatttaagaaagactattataaatttcacacaagctcttcccaacaacagg-gtggaaaaaaaaaaaaaacaaattt-----
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50537682 113 +  54856640 acacgccaggcccaggtggtttcacccatgaattataaaaaaatttaaggaagaa---tataaatttcacacaagctcttcccaagaacaga-g--gaaaaaaaaacaaact----tttcaag
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       682030 114 -   2910086 acacgccaggcccaggtggtttcaccaatgaattatacaaaaatttaaggaagaa---tataaatatcacacaagctcttcccgagaacgga-ga-aaaaaaaaaacaaact----tttcaag
i cebCap1.NW_016107610v1    C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22302395 2976 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e rheMac8.chr7               60936974 10465 + 169600520 I
e nomLeu3.chr6               17270862 3050 - 121039945 I

a score=1592144.000000
s hg38.chr15_KI270850v1_alt    402159 306 +    430880 aagctaatgatttgcttcaagaagctaacgactctgacaccagggatattttaaggaaagaaaattacaagcttatctcttatgtgcatgaatacaaaaatcctgaagacaacatttacaaatgaaatccaaacaatatactaaataaaatatattatgaacaacttgagttaattccaggaatgcgaagttggctttactttggtattctttcctgaatgttattcctacatctatagaataaaggagaaaggttaaatgaatagatgcagaaaagctgatataatttaataa-cattcatgatTT
s panTro5.chr15              63554873 306 +  83230942 aagctaatgatttgcttcaagaagctaacgactctgacaccagggatattttaaggaaagaaaattacaagcttatctcttatgtgcatgaatacaaaaatcctgaagacaacatttacaaatgaaatccaaacaatatactaaataaaatatattatgaacaacttgagttaattccaggaatgcgaagttggctttactctggtattctttcctgaatgttattcctacatctatagaataaaggagaaaggttaaatgaatagatgcagaaaagctgatataatttagtaa-cattcatgatTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80511918 306 +  99763055 aagctaatgatttgcttcaagaagctaacgactctgacaccagggatattttaaggaaagaaaattacaagcttatctcttatgtgcatgaatacaaaaatcctgaagacaacatttacaaatgaaatccaaacaatatactaaataaaatatattatgaacaacttgagttaattccaggaatgcgaagttggctttactctggtattctttcctgaatgttattcctacatctatagaataaaggagaaaggttaaatgaatagatgcagaaaagctgatataatttagtaa-cattcatgatTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       112047 304 -   1709092 aagctaatgatttgcttcaagaagctaacgactctgacaccagggatattttaagggaagaaaattacaagcttatctcttatgtgcacgaatacaaaaatcctgaagacaacatttacaaatgaaatccaaacaatatactaaataaaatatattacgaacaacttgagttaattcca-gaatgcgaagttggctttactctggtattctttcctgaatgttattcctacatctatagaataaaagagaaa-gttaaatgaatagatgcagaaaagctgatataatttaataa-cattcatgatTT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60947439 302 + 169600520 aagctaatgatttgcttcaagaagctaacaactctgacaccaggaatattttaaggaaggaaaattacaagcttatctcttatgtgcatgaacacaaaaatcctaaagataacatttacaaatgaaaaccaaggaatatactaaataacttatattatgaacaacttgagttaattccagaaaagcaaagttggctttactctggtattcttccctgaatgttattcctacatctatagaatacaggagaaaagttaaatgaatagatgcagaaaa-ctgatataatttaataa-cattcatga---
i rheMac8.chr7              I 10465 C 0
s macFas5.chr7              108473818 302 - 171882078 aagctaatgatttgcttcaagaagctaacaactctgacaccaggaatattttaaggaaggaaaattacaagcttatctcttatgtgcatgaacacaaaaatcctaaagataacatttacaaacgaaaaccaaagaatatactaaataacttatattatgaacaacttgagttaattccaggaaagcaaagttggctttactctggtattcttccctgaatgttattcctacatctatagaatacaggagaaaagttaaatgaatagatgcagaaaa-ctgatataatttaataa-cattcatga---
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1        83056 302 -   1987038 aagctaatgatttgcttcaagaagctaacaactctgacaccaggaatattttaaggaagggaaattacaagcttatctcttatgtgcatgaacacaaaaatcctaaagataacatttacaaacgaaaaccaaagaatatactaaataacttatattatgaacaacttgagttaattccaggaaagcaaagttggctttactctggtattcttccctgaatgttattcctacatctatagaatacaggagaaaagttaaatgaatagatgcagaaaa-ctgatataatttaataa-cattcatga---
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21164138 294 -  24206276 aagctaatgatttgcttcaagaagctaacaactctgacaccaggaatattttaaggaaggaaaattacaagcttatctcttatatgcatgaacacaaaaatcctaaagataacatttacaaacgaaaaccaaagaatatactaaataacttatattatgaacaacttgagttaattccaggaaagcaaagt-----------tggtattcttccctgaatgttattcctacatctatagaatacaggagaaaagttaaatgaatagatacagaaaa-ctgatataatttaataa-cattcatgaatt
i chlSab2.chr29             C 0 I 12
s manLeu1.NW_012106908v1       106348 305 -   1397330 aagctaatgatttgcttcaagaagctaacaactctgacaccaggaatattttaaggaaggaaaattacaagcttatctcttatgtgcatgaacacaaaaatcctaaagataacatttacaaatgaaaaccaaagaatatactaaataacttatattatgaacaacttgagttaattccaggaaagcaaagttggctttactctggtattcttccctgaatgttattcctacatctatagaatacaggagaaaagttaaatgaatagatgcagaaaa-ctgatataatttaataa-cattcatgatta
i manLeu1.NW_012106908v1    C 0 I 1
s colAng1.NW_012117110v1       103808 305 -   1784207 aagctaatgatttgcttcaagaagctaacgactctgacaccaggaatattttaaggaaggaaaattacaagcttatctcttatgtgcatgaacacaaaaatcctaaagataacatttacaaacgaaatccaaacaatatactaaataacttatattatgaacaacttgagttaattccaggaaagcaaagttggctttactctggtattcttccttgaatgttattcctacatctatagaatacaggagaaaagttaaatgaatagatgcagaaaa-ctgatataatttaataa-cattcatgattt
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50537795 297 +  54856640 aaactaacgatttgcttcaagaagctaatgactctgacaccagggatattttaaggaagaaaatgtacaagcttatcttttatgtgcatgaatacaaaaatcctaaagaaaacattcacaaaccaaatacaaacagtatactaaataaaatatattatgaacaac-----ttaattccaggaatgcaaagttggcttcactttggtattctttcctgaatcttattcctacgtctatacaataatggagaaa-----aataaacacatgcagaaaaagtgataaaatttaataaccatttatgattt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       682144 296 -   2910086 aagctaacgatttgcttcaagaagctaacgactctgacaccagggatattttaaggaaggaaaattacaagcttatcttttatgtgcatgaatacaaaaatcctaaagacaacatttacaaatcaaatacaaacagtatactaaataaaatatattatgaacaac-----ttaattccaggaatgcaaagttggcttcactttggtattctttcctgaatgttattcctacgtctatactataatggag-aa-----aataaacagatgcagaaaaactgatataatttaataaccattcatgattt
i cebCap1.NW_016107610v1    C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22302395 2976 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e nomLeu3.chr6               17270862 3050 - 121039945 I

a score=14813.000000
s hg38.chr15_KI270850v1_alt    402465 12 +    430880 TATGTTTGTTTT
s panTro5.chr15              63555179 12 +  83230942 TATGTTTGTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80512224 12 +  99763055 TATGTTTGTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       112351 12 -   1709092 TATGTTTGTTTT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60947741  9 + 169600520 ---tttattatt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108474120  9 - 171882078 ---tttattatt
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1        83358  8 -   1987038 ----ttattatt
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012106908v1       106654 12 -   1397330 tatttttttttt
i manLeu1.NW_012106908v1    I 1 C 0
s colAng1.NW_012117110v1       104113  9 -   1784207 ---attattatt
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50538092 12 +  54856640 tatgatttttat
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       682440 12 -   2910086 tacgatttttat
i cebCap1.NW_016107610v1    C 0 I 12
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22302395 2976 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e chlSab2.chr29              21164432 12 -  24206276 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e nomLeu3.chr6               17270862 3050 - 121039945 I

a score=-11163.000000
s hg38.chr15_KI270850v1_alt    402477 21 +    430880 CTTGGGGGtttttttgttttg
s panTro5.chr15              63555191 21 +  83230942 CTTGGGGttttttttgttttg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80512236 21 +  99763055 CTTGGGGttttttttgttttg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       112363 16 -   1709092 CTTGGGGtttt-----ttttg
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60947750  3 + 169600520 att------------------
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              108474129  3 - 171882078 att------------------
i macFas5.chr7              C 0 I 1
s cerAty1.NW_012002657v1        83366  3 -   1987038 att------------------
i cerAty1.NW_012002657v1    C 0 I 1
s manLeu1.NW_012106908v1       106666  3 -   1397330 ctt------------------
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       104122  3 -   1784207 att------------------
i colAng1.NW_012117110v1    C 0 I 1
s saiBol1.JH378108           50538104  3 +  54856640 ctc------------------
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22302395 2976 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       682452 12 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e chlSab2.chr29              21164432 12 -  24206276 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e nomLeu3.chr6               17270862 3050 - 121039945 I

a score=13527.000000
s hg38.chr15_KI270850v1_alt    402498 6 +    430880 ttttgt
s panTro5.chr15              63555212 6 +  83230942 ttttgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80512257 6 +  99763055 ttttgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       112379 6 -   1709092 ttttgt
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60947754 6 + 169600520 ttttct
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              108474133 6 - 171882078 ttttct
i macFas5.chr7              I 1 C 0
s cerAty1.NW_012002657v1        83370 6 -   1987038 ttttct
i cerAty1.NW_012002657v1    I 1 C 0
s chlSab2.chr29              21164444 6 -  24206276 ttttct
i chlSab2.chr29             I 12 C 0
s colAng1.NW_012117110v1       104126 6 -   1784207 ttttct
i colAng1.NW_012117110v1    I 1 C 0
s saiBol1.JH378108           50538107 3 +  54856640 -ttt--
i saiBol1.JH378108          C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22302395 2976 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       682452 12 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e manLeu1.NW_012106908v1       106669 0 -   1397330 C
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e nomLeu3.chr6               17270862 3050 - 121039945 I

a score=1430793.000000
s hg38.chr15_KI270850v1_alt    402504 246 +    430880 -ttttttggagacagtgtctggctgtgtcacccaggctggagtgcagcggcacgatcttggctcactgcaatctccacctcctgagctcaagcgatcctcccacctcagccccaagtaactgggactacaggtacgtgccaccacacccggcttttcatacttttgtacagatggggtttcactacattgcccaggctggtctctaa----------------------ccacctcaacctccccaagtgctgggattatagacatgag
s panTro5.chr15              63555218 267 +  83230942 -ttttt-ggagacagtgtctggctgtgtcacccaggctggagtgcagtggcacgatcttggctcactgcaatctccacctcctgagctccagcgatcctcccacctcagccccaagtaactgggactacaggtacgtgccaccacacccggcttttcatacttttgtacagatggggtttcactacattgcccaggctggtctctaagtcctgggttcaagtgatctgaccacctcaacctccccaagtgctgggattatagacatgag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80512263 267 +  99763055 -ttttt-ggagacagtgtctggctgtgtcacccaggctggagtgcagtggcacgatcttggctcactgcaatctccacctcctgagctccagcgatcctcccacctcagccccaagtaactgggactacaggtacgtgccaccacacccggcttttcatacttttgtacagatggggtttcactacattgcccaggctggtctctaagtcctgggttcaagtgatctgaccacctcaacctccccaagtgctgggattatagacatgag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       112385 267 -   1709092 -ttttt-ggagacagtgtctggctgtgtcacccaggctggagtgcagtggcacgatcttggctcactgcaatctccacctcctgagctcaagcgatcctcccacctcagccccaagtaactgggactacaggtacgtgccaccacacccagcttttcatacttttgtatagatgaggtttcactacattgcccaggctggtctctaagtcctgggtttaagtgatctgaccacctcaacctccccaagtgctgggattatagacatgag
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60947760 267 + 169600520 -ttttt-ggagacagtgtctggctctgtcacccaggctagagtgcagtggcacggtcttggcttactgcaatctctgcctcctgagctcaagcgatcctcccatctcagcaccaagtaactgggactacaggtgcatgccaccacactcggctttttgtacttttgtacagatagggtttcactacattgcccaggctggtctctaagtcctgggttcaagtgatctgcccacctcaacctcccaaagtgctgggattatagacatgag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108474139 267 - 171882078 -ttttt-ggagacagtgtctggctctgtcacccaggctagagtgcagtggcacggtcttggcttactgcaatctctgcctcctgagctcaagcgatcctcccatctcagcaccaagtaactgggactacaggtgcatgccaccacactcggctttttgtacttttgtacagatagggtttcactacattgcccaggctggtctctaagtcctgggttcaagtgatctgcccacctcaacctcccaaagtgctgggattatagacatgag
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1        83376 261 -   1987038 -ttttt-ggagacagtgtctggctctgtcacccaggctagagt------gcacggtcttggcttactgcaatctctgcctcctgagctcaagcgatcctcccatctcagcaccaagtaactgggactacaggtgcatgccaccacactcggctttttgtacttttgtacagatagggtttcactacattgcccaggctggtctctaagtcctgggttcaagtgatctgcccacctcaacctcccaaagtgctgggattatagacaagag
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21164450 267 -  24206276 -ttttt-ggagacagtgtctggctctgtcacccaggctagagtgcagtggcacggtcttggcttactgcaatctctgcctcctgagctcaagcgatcctcccacctcagcaccaagtaactgggactacaggtgcatgccaccacactcggctttttgtacttttgtacagatagggtttcactacattgcccaggctggtctctaagtcctgggttcaagtgatctgcccacctcaacctcccaaagtgctgggattatagacatgag
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       106669 266 -   1397330 --tttt-ggagacagtgtctggctctgtcacccaggctagagtgcagtggcacggtcttggcttactgcaatctctgcctcctgagctcaagcgatcctcccatctcagcaccaagtaactgggactacaggtgcatgccaccacactcggctttttgtacttttgtacagatagggtttcactacattgcccaggctggtctctaagtcctgggttcaagtgatctgcccacctcaacctcccaaagtgctgggattatagacatgag
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       104132 267 -   1784207 -ttttt-ggagacagtatctggctctgtcacccaggctggagtgcagtggcacgatcttagcttactgcaatctctgcctcctgagctcaagtgatcctcccacctcagccccaagtaactgggactacaggtgcatgccaccacactcggcttttcgtacttttgtacagatggcgtttcactacattgcccaggctggtctctaagtcctgggttcaagtgatctgcccacctcaacctcccaaagtgctgggattatagacatgag
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50538110 264 +  54856640 tttttt-ggagacagggt----ttctgtcatccaggctggaatacagtggcacgatcttggctcactgcaatctccgcctcctgagttcaaatgatcctcccacctcagcctcaagtaaaaagggctacaggtatatgccaccacaccaggctttttgtacttttgtagaggcagagtttcactatattgtctaggctggtccttaagacctgggttgaagtgatccacccacctcaacctcccaaagtgctgggattacgagcatgag
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       682464 268 -   2910086 tttttt-ggagacagggcctggctctgtcatccaggctggcgtacagtggcgtgatcttggttcactgcaatctctgcctcctgagctcaaacgatcctcccacctcagcctcaagtaaaaaggactacaggtacatgccaccacaccaggctttttgtacttttgtagaggcagagtttcactacattgtctaggctggtccctaagacctgggttgaagtgatccacccacctcaacctccgaaagtgctgggattacaggcatgag
i cebCap1.NW_016107610v1    I 12 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22302395 2976 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e nomLeu3.chr6               17270862 3050 - 121039945 I

a score=976991.000000
s hg38.chr15_KI270850v1_alt    402750 157 +    430880 ccactgcatcctgc-----AGATTTTCTTTTTTTAAAAGCCTCTTGGCAAAGTCTGAAAAGAACTTTCTTAATCAGAT-AAAAAACATTCAC---AACTTCAGCATATTTAAAGGAGAAATGCTAAGAAGTTCACTCACAACCCCTCCCCTAAGACTGGAAACAAG
s panTro5.chr15              63555485 157 +  83230942 ccactgcatcctgc-----AGATTTTCTTTTTTTAAAAGCCTCTTGGCAAAGTCTGAAAAGAACTTTCTTAATCAGAT-AAAAAACATTCAC---AACTTCAGCATATTTAAAGGAGAAATGCTAAGAAGTTCACTCACAACCCCTCCCCTAAGACTGGAAACAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80512530 157 +  99763055 ccactgcatcctgc-----AGATTTTCTTTTTTTAAAAGCCTCTTGGCAAAGTCTGAAAAGAACTTTCTTAATCAGAT-AAAAAACATTCAC---AACTTCAGCATATTTAAAGGAGAAACGCTAAGAAGTTCACTCACAACCCCTCCCCTAAGACTGGAAACAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       112652 157 -   1709092 ccactgcatcctgc-----AGATTTTCTTTTTTTAAAAGCCTCCTGGCAAAGTCTGAAAAGAACTTTCTTAATCAGAT-AAAAAACATTCAC---AACTTCAGCATATTTAAAGGAGAAATGCTAAGAAGTTCACTCACAGCCCCTCCCCTAAGACTGGAAACAAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17273912 160 - 121039945 CCACTGCATCCTGC-----AGATTTTCTTTTTTTAAAAGCCTCTTGGCAAAGTCTGAAAAGAACTTTTTTAATCAGAT-AAAAAACATTCGCAAAAACTTCAGCATATTTAAAGGAGAAATGCTGAGAAGTTCACTCACAACCCCTCCCCTAAGACTGGAAACAAg
i nomLeu3.chr6              I 3050 C 0
s rheMac8.chr7               60948027 159 + 169600520 ccactgcaccctgc-----aaatttttttttttt-taagcctcttggcaaagtctgaaaataactttcttaatcagat-aaaaaacattcacaaaaacttcagcatatttaaaggagaaatgctgagaagttcactaatagcccctcccctaagactagaaacaag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108474406 159 - 171882078 ccactgcaccctgc-----aaatttttttttttt-taagcctcttggcaaagtctgaaaataactttcttaatcagat-aaaaaacattcacaaaaacttcagcatatttaaaggagaaatgctgaGAAGTTCACTAATAGCCCCTCCCCTAAGACTGGAAACAAG
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1        83637 158 -   1987038 ccactgcaccctgc-----aaa-ttttctttttt-aaagcctcttggcaaagtctgaaaataactttcttaatcagat-aaaaaacattcacaaaaacttcagcatatttaaaggagaaatgctgaGAAGTTCACTAATAGCCCCTCCCCTAAGACTGGAAACAAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21164717 160 -  24206276 ccactgcaccctgcaaaaaaaa--tttttttttt-aaagcctcttggcaaagtctgaaaataactttctcaatcagataaaaaaacattcacaaaaactt---catatttaaaggagaaatgctgaGAAGTTCACTAATAGCCCCTCCCCTAAGACTGGAAACAAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       106935 157 -   1397330 ccactgcaccctgc-----aaa--tttttttttt-aaagcctcttggcaaagtctgaaaataactttcttaatcagat-aaaaaacattcacaaaaacttcagcatatttaaaggagaaatgctgaGAAGTTCACTAATAGCCCCTCCCCTAAGACTGGAAACAAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       104399 158 -   1784207 ccactgcaccctgc-----aaatttttttttttt-aaagcctcttggcaaagtctgaaaataactttcttaatcagat-aaaaaa-attcacaaaaacttcagcatatttaaaggagaaatgctgaGAAGTTCACTAACAGCCCCTCCCCTAAGACTGGAAACAAG
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50538374 159 +  54856640 ccactgtgccctgc-----agattttctttttta-aaagcctcttggcaaagtctgaaaacaactttcttaaccagat-aaagaacattcacaaaaacttcagcatatttaatggagaaatgctaagaatttcgctcACAACCCCACCCCCAAGACTGGAAACAAG
i saiBol1.JH378108          C 0 I 1886
s cebCap1.NW_016107610v1       682732 159 -   2910086 ccactgtgccctac-----agattttctttttta-aaagcctcttggcaaagtctgaaaagaactttcttaatcagat-aaagaacattcacaaaaacttcagcatatttaatggagaaatgctaagacgttcactcACAACCCCGCCCCCAAGACTGGAAACAAG
i cebCap1.NW_016107610v1    C 0 I 1861
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22302395 2976 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I

a score=201206.000000
s hg38.chr15_KI270850v1_alt    402907 85 +    430880 C--TCCCCCCG-----GGGAGAGAGACACTCACCCTGGATGGGAGCCTGGAACTCTACCACCCCGCCCCGCTCCCCCCTCAATgcccccctg
s panTro5.chr15              63555642 85 +  83230942 C--Tccccccg-----gggagagagacactcaccctggatgggagcctggaactctaccaccccgccCCGCTCCCCCCTCAACgcccccctg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80512687 85 +  99763055 C--Tccccccg-----gggagagagacactcaccctggatgggagcctggaactctaccaccccgccCCGCTACCCCCTCAACgcccccctg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       112809 84 -   1709092 G--T-CCCCCG-----GGGAGAGAGACACTCACCCTGGATAGGAGCCTGGAACTCTACCACTGCGCCCCGCTCCCCCCTCAACgcccccctg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17274072 80 - 121039945 ---tcccccac-----gggagagagacactcaccctggatgagagcctggaactctacgaccccactccccccgcccc----cgccccccag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60948186 68 + 169600520 TCCCCCCCCCAACCccgggaaaaagacacacaccctgcatgggagcctggaactctacgacaccgcca------------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108474565 68 - 171882078 TCCCCCCCCCAACCccgggaaaaagacatacaccctgcatgggagcctggaactctacgaccccgcca------------------------
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1        83795 66 -   1987038 T--CCCCCCCAACCccgggaaaaagacacacaccctgcatgggagcctggaactctacgaccctgccg------------------------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21164877 66 -  24206276 T--GCCCCCCAACCccgggaaaaagacacacaccctgcatgggagcctggaactctacgacaccccca------------------------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       107092 66 -   1397330 T--CCCCCCCAACCccgggaaaaagacacacaccctgcatgggagcctggaactctacgaccctgccg------------------------
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       104557 65 -   1784207 T---CCCCCCAACCCAAGAAAaaagacacacaccctgcatgggagcctggaactctatgacccccctg------------------------
i colAng1.NW_012117110v1    C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22302395 2976 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       682891 1861 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e macNem1.NW_012011945v1        76695 15086 -   2311642 I
e saiBol1.JH378108           50538533 1886 +  54856640 I

a score=1435237.000000
s hg38.chr15_KI270850v1_alt    402992 267 +    430880 -ggacagcccgggaggctgccaggaagggactggcctccttgggaggctcccaggatcctcttcagcctcgctgcttctgagtccctgccggcaagcctccgccaagcagtggccttgctgatgcctggggaagcccaccgggagagagacacacaccctgggtgggaccctggggctctaagactccctaccctgggacggccccaggggctgctggaaagggactggcctcctcgggaggctcccagcgtcctcttcgTCACTCCT------------------
s panTro5.chr15              63555727 266 +  83230942 -g-acagcccaggaggctgccaggaagggactggcctccttgggaggctcccaggatcctcttcagcctcgctgcttctgagtccctgccggcaagcctccgccaagcggtggccttgctgatgcctggggaagcccaccgggagagagatacacaccctgggtgggaccctggggctctaagaccccctaccctgggacggccccaggggctgctggaaagggactggcctcctcgggaggctcccagcgtcctcttcgtcactcct------------------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80512772 266 +  99763055 -g-acagcccaggaggctgccaggaagggactggcctccttgggaggctcccaggatcctcttcagcctcgctgcttctgagtccctgccggcaagcctccgccaagcggtggccttgctgatgcctggggaagcccaccgggagagagatacacaccctgggtgggaccctggggctctaagaccccctaccctgggacggccccaggggctgctggaaagggactggcctcctcgggaggctcccagcgtcctcttcgtcactcct------------------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       112893 267 -   1709092 -ggacagcccgggaggctgccaggaagggactggcctccttgggaggctcccaggatcctcttcggcctagctgcttctgagtccctgccggcatgcctccgccaagcggtggccttgctgatgcctggggaagcccaccaggagagacacacacaccctgggtgggaccctggggctctaagaccccctaccctgggacggccccaagggctgctggaaagggactggcctcctcgggaggcttccagAGTCCTCTTCGTCACTCTT------------------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17274152 264 - 121039945 -g-acagccccggaggctgccaggaagggactggcctccttgggaggctaccaggatcctcttcggcctcgctgcttctgagtccctgccggcacgcctccgccaaccggtggccttgccgacgcctggggaagcccaccgggagagagacacacaccctgggtggga-cctggggctctaagaccccctaccc-ggaacggcccgaggggctgctggaaagggactggcctccttgggaggctcccagcATCCTCTTCGTCACTCTT------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60948254 267 + 169600520 gg-atagccctggaggctgctgggaagtgactggcctccttgggaggctcccagtgtcctcttcggcctcgctgcttctgagtccctgctggcatgcctctgccacctggtggccttgctgccacctgggaaagccctccaggagagagacatgcaccctgggtgggagcctggggctctaagaccccccaccccggaacagccccgggggctgctgggaagggactagcctccttgggaggctcccagcGACCTCTTTGGCCCTCTT------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108474633 267 - 171882078 gg-atagccctggaggctgctgggaagtgactggtctccttgggaggctcccagtgtcctcttcagcctcgctgcttctgagtccctgctggcatgcctctgccacctggtggccttgctgccacctgggaaagccctccaggagagagacatgcaccctgggtgggagcctggggctctaagaccccccaccccggaacagccccgggggctgctgggaagggactagcctccttgggaggctcccagcGACCTCTTTGGCCCTCTT------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        91781 267 -   2311642 gg-atagccctggaggctgctgggaagtgactggcctccttgggaggctcccagtgtcctcttcggccttgctgcttctgagtccctgctggcatgcctctgccacctggtggccttgctgccacctgggaaagccctccaggagagaggcatgcaccctgggtgggagcctggggctctaagaccccccaccccggaacagccccgggggctgctgggaagggactagcctctttgggaggctcccagtgacctctttggccCTCTT------------------
i macNem1.NW_012011945v1    I 15086 C 0
s cerAty1.NW_012002657v1        83861 267 -   1987038 gg-atagccctggaggctgctgggaagtgactggcctccttgggaggctcccagtgtcctcttcggcctcgctgcttctgagtccctgctggcatgcctctgccacctggtggccttgctgccacctgggaaagccctccaggagagagacatgcaccctgggtgggagcctggggctctaagaccccctaccccggaacagccccgggggctgctgggaagggactagcctccttgggaggctcccagcGACCTCTTTGGCCCTCTT------------------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21164943 285 -  24206276 gg-atagccctggagggtgctgggaagtgactggcctccttgggaggctcccagtgtcctcttcagcctcgctgcttctgagtccctgctggcatgcctctgccacctggtggacttgctgccacctgggaaagccctctaggagagagacatgcaccccgggtgggagcctggggctctaagaccccccaccccggaacagccccaggggctgttgggaagggactggcctccttgggaggctcccagcgacctctttggccCTCTTAACCATACAAAAATATAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       107158 267 -   1397330 gg-atagccctggaggctgctgggaagtgactggcctccttgggaggctcccagtgtcctcttcagcctcgctgcttctgagtccctgctggcatgcctctgccacctggtggccttgctgcctcctgggaaagccctccaggagagagacatgcaccctgggtgggagcctggggctctaagaccccctaccccggaacagccccgggggctgctgggaagggactagcctccttgggaggctcccagcGACCTCTTTGGCCCTCTT------------------
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       104622 285 -   1784207 gg-atagccctggaggctgccgggaagtgactggcctccttgggaggctcccagtgtcctcttcggcctcgctgcttctgagtccctgctggcatgcctccgccacctggtggccttgctgccacctgggaaagccctccaggagagagacatgcaccctgggtgggagcctggggctctaagaccccccaccccggaacagccccgggggctgctgggaagggactggcctccttgggaggctcccagcGACCTCTTTGGCCCTCTTAACCATATAAAAATATAC
i colAng1.NW_012117110v1    C 0 C 0
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22302395 2976 + 158406734 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       682891 1861 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e saiBol1.JH378108           50538533 1886 +  54856640 I

a score=123978.000000
s hg38.chr15_KI270850v1_alt    403259 16 +    430880 AACCACATAAAAATAT
s panTro5.chr15              63555993 16 +  83230942 AACCACATAAAAATAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80513038 16 +  99763055 AACCACATAAAAATAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       113160 16 -   1709092 AACCACATAAAAATAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17274416 16 - 121039945 AACCATATAAAAATAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60948521 16 + 169600520 AACCATATAAAAATAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108474900 16 - 171882078 AACCATATAAAAATAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        92048 16 -   2311642 AACCATATAAAAATAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        84128 16 -   1987038 AACCATATAAAAATAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21165228 16 -  24206276 AACCATATAAAAATAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       107425 16 -   1397330 AACCATATAAAAATAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       104907 16 -   1784207 AACCATATAAAAATAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22305371 16 + 158406734 AACCATATAAACATAT
i calJac3.chr6              I 2976 I 15
s saiBol1.JH378108           50540419 16 +  54856640 AACCATATACAAATAT
i saiBol1.JH378108          I 1886 I 15
e aotNan1.NW_018505940v1     40697887 11185 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e cebCap1.NW_016107610v1       682891 1861 -   2910086 I
e otoGar3.GL873530             689583 16079 -  36342412 I

a score=1206337.000000
s hg38.chr15_KI270850v1_alt    403275 136 +    430880 gggtcttgctcccaggctggagtgcagcagcattatcacagctcactgaagcctcgaactcctgggctcaagtgaccctctcaccttaacctcccaaagtgc---------tgggattacaggcacgagccactgcacccagctg
s panTro5.chr15              63556009 136 +  83230942 gggtcttgctcccaggctggagtgcagcagcattatcacagctcactgcagcctcgaactcctgggctcaagtgaccctctcaccttaacctcccaaagtgc---------tgggattacaggcacgagccactgcacccagctg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80513054 136 +  99763055 gggtcttgctcccaggctggagtgcagcagcattatcacagctcactgcagcctcgaactcctgggctcaagtgaccctctcaccttaacctcccaaagtgc---------tgggattacaggcacgagccactgcacccagctg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       113176 136 -   1709092 gggtcttgctcccaggctggagtgcagcagcattatcatagctcactgaagcctcgaactcctgggctcaagtgaccctcccaccttaacctcccaaagtgc---------tgggattacaggcacgagccactgcacccagctg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17274432 136 - 121039945 gggtcttgctcccaggctggagtgcagcagcattatcatagctcactgaagcctcaaactcctgggctcaaatgaccctcccaccttaatctcccaaagtgc---------tgggattacaggcatgagccactgcacccagcTg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60948537 125 + 169600520 Aggtcttgctcccaggttgcagtacagcagcatgatcatagctcactgaagcctcgaactcctggg-----------ctcccaccttaacctctcaaagtgc---------tgggattacaggcatgagccactgcactcatctg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108474916 125 - 171882078 Aggtcttgctcccaggttgcagtacagcagcatgatcatagctcactgaagcctcgaactcctggg-----------ctcccaccttaacctctcaaagtgc---------tgggattacaggcatgagccactgcactcatctg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        92064 125 -   2311642 Aggtcttgctcccaggttgcagtacagcagcatgatcatagctcactgaagcctcgaactcctggg-----------ctcccaccttaacctctcaaagtgc---------tgggattacaggcatgagccactgcactcatctg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        84144 125 -   1987038 Aggtcttgctcccaggttgcagtacagcagcatgatcatagctcactgaaacctcgaactcctggg-----------ctcccaacttaacctctcaaagtgc---------tgggattacaggcatgagccactgcactcagctg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21165244 125 -  24206276 Aggtcttgctcccaggttgcagtgcagcggcatgatcatagctcactgaagcctcaaactcctggg-----------ctcccaccttaacctcccaaagtgc---------tgggattacaggtatgagccactgcactcagctg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       107441 125 -   1397330 Aggtcttgctcccaggttgcagtacagcagcatgatcatagctcactgaaacctcgaactcctggg-----------ctcccaacttaacctctcaaagtgc---------tgggattacaggcatgagccactgcactcagctg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       104923 125 -   1784207 Aggtcttgctcccaggatgcagtgcagcagcatgatcatagctcactgaagcctcgaactcctggg-----------ctcccaccttaacctcccaaagtgc---------tgggattacaggcatgagccactgcactcagctg
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22305402 145 + 158406734 gggtcttgctcttaaactggagtatagcagcatcatcatagctcactgaagcctccaactcctggactcaagggttctttccaccttaacctcccaaagagctgggattactgggattacaggcatgagccactgtaccctgcTg
i calJac3.chr6              I 15 C 0
s saiBol1.JH378108           50540450 145 +  54856640 gggtcttgctctcagactggaatatagcagcatcatcatagctcactgaagcctccaactcctgggctcaagggttcttcccactttaacctcccaaagtgctgggattactgggattacaggcatgagccactgtacccagcTg
i saiBol1.JH378108          I 15 C 0
s cebCap1.NW_016107610v1       684752 145 -   2910086 gggtcttgctctcaaactggagtatagcagcatcaacatagctcactgaagcctccaactcctgggctcaagggttcttcccaccttaacctcccaaagtgctgggattactgggattacaggcatgagccactgtactcagcTg
i cebCap1.NW_016107610v1    I 1861 C 0
s aotNan1.NW_018505940v1     40709072 145 +  42888418 gggtcttgctctcaaactggagtatagcagcatcatcacagctcactgaagcctccaactcctgggctcaagggttcttcccaccttaacctcccaaagtgctgggattattgggattacaggcatgagccactgtacccagcTg
i aotNan1.NW_018505940v1    I 11185 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1859333 43819 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e otoGar3.GL873530             689583 16079 -  36342412 I

a score=4392761.000000
s hg38.chr15_KI270850v1_alt    403411 436 +    430880 taatattctatttcttgacctgggtagtggttatgtgggtgtctgctgtata---actgattaaaatatacaggtg-ttttatgcaagtttc----catatattctatgtttaacaatttggaaaagtCCATCAAACTAGTCCAAGAATTAAACAAAACACAATGATAATCTAAGTAATCACTAAAAATTACTGAAGTCTAAATAAATACTGATTGTGAACACAT--ACATACACACAAAACTGC-AAGTAAATTCCTAGATATTATCAGTACCAAATGT-G-GGGGGGAGTACAA---TTTGAACACAAAATGAGGGCCTTTTTCAGCTTAGGCACCCAGTTTGAGAGAATGTATTCATTAAGCAATTGTATAATGTTACCTAACATGCACCAGGCCCAATACTGAGGATTAGAAATCCAAGGATTTCAAA----AGATC---------------TT-----TAaaaaaaagaaa
s panTro5.chr15              63556145 437 +  83230942 taatattctatttcttgacccgggtagtggttatgtgggtgtctgctgtata---actgattaaaatatacaggtg-ttttatgcaagtttc----catatattctatgtttaacaatttggaaaagtCCACCAAACTAGTCCAAGAATTAAACAAAACACAATGATAATCTAAGTAATCACTAAAATTTACTGAAGTCTAAATAAATACTGATTGTGAACACAT--ACATACACACAAAACTGC-AAGTAAATTCCTAGATATTATCAGTACCAAATGTCG-GGGGGGAGTACAG---TTTGAACACAAAATGAGGGCCTTTTTCAGCTTAGGCACCCAGTTTGAGAGAATGTATTCATTAAGCAATTGTATAATGTTACCTAACATGCACCAGGCCCAATACTGAGGATTAGAAATCCAAGGATTTCAAA----AGATC---------------TT-----Taaaaaaaagaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80513190 437 +  99763055 taatattctatttcttgacccgggtagtggttatgtgggtgtctgctgtata---actgattaaaatatacaggtg-ttttatgcaagtttc----catatattctatgtttaacaatttggaaaagtCCACCAAACTAGTCCAAGAATTAAACAAAACACAATGATAATCTAAGTAATCACTAAAATTTACTGAAGTCTAAATAAATACTGATTGTGAACACAT--ACATACACACAAAACTGC-AAGTAAATTCCTAGATATTATCAGTACCAAATGTGG-GGGGGGAGTACAA---TTTGAACACAAAATGAGGGCCTTTTTCAGCTTAGGCACCCAGTTTGAGAGAATGTATTCATTAAGCAATTATATAATGTTACCTAACATGCACCAGGCCCAATACTGAGGATTAGAAATCCAAGGATTTCAAA----AGATC---------------TT-----Taaaaaaaagaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       113312 442 -   1709092 taatattctatttcttgacctgggtagtggttatgtgggtgtctgctgtata---actgattaaaatatacaggtg-ttttatgcaagtttc----catatattccatgtttaacaatttggaaaagtCCATCAAACTAGTCCAAGAATTAAACAAAACACAATGATAATCTAAGTAATCACTAAAAATTACTGAAGTCTAAATAAATACTGATTGTGAACACAT--ACACACACACAAAACTGC-AAGTAAATTCCTAGATATTATCAGTACCAAATGTGG-GGGGGGAGTACAA---TTTGAACACAAAATGAGGGCCTTTTTCAGCTTAGGCACCCAGTTTGAGAGAATGTATTCATTAAGCAATTGTATAATGTTACCTAACATGCACCAGGCCCAATACTGAGGATTAGAAATCCAAGGATTTCAAA----AGATC---------------TTaaaaaaaaaaaaaagaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17274568 431 - 121039945 taatattctgtttcttga-ctgggtagtggttatgtgggtgtctgctgtata---actgattaaaatatacaggtg-ttttattcaagtttc----catatattctatgtttaacaatttggaaaagtCCATCAAACTAGTCCAAGAATT-----AAACACAAGGATAATCTAAGTAATCAGTAAAAATTACTGAAATCTAAATAAATACCGATTGTGTACACAT--ACACACACACAAAACTGC-AAGTAAATTCCTAGATATTATCAGTACCAAATGTGGAGGGGGGAGTACAA---TTTGAACACAAAATGAGGGCCTTTTTCAGCTTAGGCACCCAGTTTGAGAGAATGTATTCATTAAGCCATTGTATAATGTTACGTAACATGCACCAGGCCCAATACTGAGGATTAGAAATCCAATTATTTCAAA----AGATC---------------TT-----T-aaaaaaagaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60948662 429 + 169600520 taatattctatttcttgacctgggtagtggttatgtgggtgtctgctgtata---actgattaaagtatacaggtg--tttatgcaagtttc----catatattctatgtttaacaatttggaaaagtccattaaaCTAGTCCAAGAATTAAACAAAACACAATGATAATCTAAGTAATCAGTAAAAATTACTGAAGTCTAAATAAATAACCATTGTGTACACAT--ACACATATACAAAACTGC-AAGTAAATTCCTAGATATTATCAGTACCGAATGT---GGGGGGAGTACAA---TTTGAACATAAAATGAGGGCCTTTTTCAGCTTAGGCATCCAGTTTGAGAGAATGTATTCATTAAGCAATTGTATAATGTTACCTAACATGCACCAGGCCCAATACTGAGGATTAGAAATCCATGGATTTCAGA----AGACC---------------TT-----T-----AAAAAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108475041 431 - 171882078 taatattctatttcttgacctgggtagtggttatgtgggtgtctgctgtata---actgattaaagtatacaggtg--tttatgcaagtttc----catatattctatatttaacaatttggaaaagtccattaaaCTAGTCCAAGAATTAAACAAAACACAATGATAATCTAAGTAATCAGTAAAAATTACTGAAGTCTAAATAAATAACCATTGTGTACACAT--ACACATATACAAAACTGC-AAGTAAATTCCTAGATATTATCAGTACCGAATGT---GGGGGGAGTACAA---TTTGAACACAAAATGAGGGCCTTTTTCAGCTTAGGCATCCAGTTTGAGAGAATGTATTCATTAAGCAATTGTATAATGTTACCTAACATGCACCAGGCCCAATACTGAGGATTAGAAATCCAAGGATTTCAGA----AGACC---------------TT-----T---AAAAAAAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        92189 430 -   2311642 taatattctatttcttgacctgggtagtggttatgtgggtgtctgctgtata---actgattaaagtatacaggtg--tttatgcaagtttc----catatattctatgtttaacaatttggaaaagtccattaaaCTAGTCCAAGAATTAAACAAAACACAATGATAATCTAAGTAATCAGTAAAAATTACTGAAGTCTAAATAAATAACCATTGTGTACACAT--ACACATATACAAAACTGC-AAGTAAATTCCTAGATATTATCAGTACCGAATGT---GGGGGGAGTACAA---TTTGAACACAAAATGAGGGCCTTTTTCAGCTTAGGCATCCAGTTTGAGAGAATGTATTCATTAAGCAATTGTATAATGTTACCTAACATGCACCAGGCCCAATACTGAGGATTAGAAATCCAAGGATTTCAGA----AGACC---------------TT-----T----aaaaaaaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        84269 429 -   1987038 taatattctatttcttgacctgggtagtggttatgtgggtgtctgctgtata---actgattaaagtatacaggtg--tttatgcaagtttc----catatattctatgtttaacaatttggaaaagtccattaaaCTAGTCCAAGAATTAAACAAAACACAATGATAATCTAAGTAAACAGTAAAAATTACTGAAGTCTAAATAAATAACCATTGTGTACACAT--ACACATATACAAAACTGC-AAGTAAATTCCTAGATATTATCAGTACCGAATGT---GGGGGGAGTACAA---TTTGAACACAAAATGAGGGCCTTTTTCAGCTTAGGCATCCAGTTTGAGAGAATGTATTCATTAAGCAATTGTATAATGTTACCTAACATGCACCAGGCCCAATACTGAGGATTTGTAATCCAAGGATTTCAGA----AGACC---------------TT-----T-----AAAAAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21165369 426 -  24206276 taatattctatttcttgacctgggtagtggttatgtgggtgtctgctgtata---actgattaaagtatacaggtg--tttatgcaagtttc----catatattctatgtttaacaatttggaaaagtCCATCAAGCTAGTCCAAGAATTAAACAAAACACAATGATAATCTAAGTAATCAGTAAAAATTACTGAAGTCTAAATAAATAACCATTGTGTACACAT--ACACATATACAAAACTGC-AAGTAAATTCCTAGATATTATCAGTACCAAATGT---GGGGGGAGTACAA---TTTGAACACAAAATGAGGGCCTTTTTCAGCTCAGGCATCCAGTTTGAGAGAATGTATTCATTAAGC--------AATGTTACCTAACATGCACCAGGCCCAATACTGAGGATTAGAAATCCGAGGATTTCAGA----AGACC---------------TT-----Taaaaaaaaaaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       107566 429 -   1397330 taatattctatttcttgacctgggtagtggttatgtgggtgtctgctgtata---actgattaaagtatacaggtg--tttatgcaagtttc----catatattctatgtttaacaatttggaaaagtccattaaaCTAGTCCAAGAATTAAACAAAATACAATGATAATCTAAGTAATCAGTAAAAATTACTGAAGTCTAAATAAATAACCATTGTGTACACAT--ACACATATACAAAACTGC-AAGTAAATTCCTAGATATTATCAGTACCGAATGT---GGGGGGAGTACAA---TTTGAACACAAAATGAGGGCCTTTTTCAGCTTAGGCATCCAGTTTGAGAGAATGTATTCATTAAGCAATTGTATAATGTTACCTAACATGCACCAGGCCCAATAATGAGGATTTGTAATCCAAGGATTTCAGA----AGACC---------------TT-----T-----AAAAAAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       105048 427 -   1784207 taatattctatttcttgacctgggtagtggttatgtgggtgtctgctgttta---actgattgaagtatacaggtg--ttcatgcaagtttc----catatattctatgtttaacaatttggaaaagtCCATCAAACTAGTCCAAGAATTAAACAAAACACAATGATAATCTAAGTAATCAGTAAAAATTACTGAAGTCTAAATAAATAACCATTGTGTACACAT--ACACACATACAAAACTGCAAAGTAAATTCCTAGATATTATCAGTACCCAATGT---GGGGGGAGTACAA---TTTGAACACAAAATGAGGGCCTTTTTCAGCTTAGGCATCCAGTTGGAGAAAATGTATTCATTAAGCAATTGTATAATGTTACCTATTAT----TAGGCCCAATACTGAGGATTAGAAATCCAAGGATTTCAGA----AGACC---------------TT-----T----AAAAACAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22305547 433 + 158406734 taatattctattttttgacctaggtagtggttatgtgggtgtctgctgaata---actgattaaaacatactggtg-ttttattcaagtttc----catatattctatatttaacaatttggaaatCTCCAGCAAACTAGTCCAAGAATTAATAAAAACACAATGATAATCTAAGTAATCAGTAAAAATTACTAAAGTCTAAATAAACAATGACTGTGTACACATACACACACACACAAAACTGC-AAGTAAATTCCTAGATATTATCAGTACCAAATGT---TGAGGGAGTACAA---TTTGAACATAAAATGAGGGCCTTTTTCAGCTTAGGGACCCAGTTTGAGAGAATGTATTCATTAAGCAATTGTATAATGTCACATAATATGCACAAGACCCAACAGTGAGGACTGGAAATCCAAGGATTTCAAA----AGATC---------------TT-----T----aaaaaaaa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50540595 430 +  54856640 taatattctattttttgacctaggtagtggttatgtgggtgtctgctgaata---actgattaaaatataccagag-tattattccagtttc----catatattctatatttaacaatttggaaaagtCCAGCAAACTAGTCCAAGAATTAAATGAAACACAATGATAATCTAAATAATCTGTAAAAATTACTAAAGTCTAAATAAACACTGACTGTGTACACAT--ACACACACACAGAACTGC-AAGTAAATTCCTAGATATTATCAGTACCGAATGT---TGGGGGAGTACAA---TTTGAACATAAAATGAGGGCCTTTTTCAGCTTAGGGACCCAGTTTGAGAG-ATGCATTCATTAAGCAATTGTATAATGTCACATAACATGCACAAGGCCCAACAGTGAGGATTGGAAATCCAAGGATTTCAAA----AGATC---------------TT-----T----aaaaaaaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       684897 446 -   2910086 taatattctattttttgatctaggtagtggttatgtgggtgtctgctgaata---aatgattaaaatatactggtg-ttttattcaagtttc----catatattctatatttaacattttggaaaagtCCAGCAAGCTAGTCCAAGAATTAAACAAAACACAATGATAATCTAAGTAATCAGTAAAAATTACTAAAGTCTAAATAAACACTGACTGTGTACACAT--ACACACACACAAAACTGC-AAGTAAATTCCTAGATACTATCAGTACCAAATGT---TAGGGGAGCACAA---TTTGAACATAAAATGAGGGCCTTTTTCAGCTTAGGGACCCAGTTTGAGACAATGTATTCATTAAGCAATTGTATAATGTCACATAACATGCACAAGGCCCAACAGTGAGGATTGGAAATCCAAGGATTTCAAA----AGATCTTTTTTTTTTCTTTTTT-----T----aaaaaaaa
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40709217 429 +  42888418 taatattctattttttgacctaggtagtggttatgtgggtgtctgctgatta---actgattaaaatataccggtg-ttttattcaagtttc----catatattctatatttaacaatttggaaaagtCCAGCAAACTAGTCCAAGAATTAAACGAA--ACAATGATAATCTAAGTAATCAGTAAAAATTACTAAAGTCTAAATAAACACTGACTGTGTACACAT--ACACACACACAAAACTGC-AAGTAAATTCCTAGATATTATCAGTACCGAATAT---TGGGGGAGTACAA---TTTGAACATAAAATGAGGGCCTTTTTCAGCTCAGGGATCCAGTTTGAGAGAATGTATTCATTAAGCAATTGTATAATGTCACATAACATGCACAAGGCCCAATCGTGAGGATTGGAAATCCAAGGATTTCAAA----ACATC---------------TT-----T----AAAAAAAA
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1903152 417 +   3943991 taatgatcgatgtcttgaccaaggtagtgattacatgcgtttttactgtatagttatttgttaaaatatgcaatttttttcttgctattttctatgtatgtatgttatGATTAAC---TCAGAAAAGCTAAGTAAACTAGTCCAAGAATGAAAC--AATAAAACAGTAACCTAAGAAACCAGTAAAAATTATTGAAGTCCAAATAGATA------------------AC---------------T-GAACAAAATTCTAGATGCTCTCAACAGTGAATGTGGAGGTGGGGATACAACTTTTTGAACATAAAATTAGGATCTTTTTCAGCTTAGGGTGCTAGTTTGTGAGGACATATTTATTAAGCAACTGTGTAATGATACAAACCATGTGTGAAACCTGGTGCTGAGCAACAGAAATCCAACTATGTTTAATCCCTGATC---------------CT-----TAATTTAAAGAGA
i dasNov3.JH570731          I 43819 I 511
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54455682 18935 +  91889043 I
e otoGar3.GL873530             689583 16079 -  36342412 I

a score=84408.000000
s hg38.chr15_KI270850v1_alt    403847 13 +    430880 gaaagaaacgaaa----
s panTro5.chr15              63556582 13 +  83230942 gaaagaaaagaaa----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80513627 13 +  99763055 gaaagaaaagaaa----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       113754 13 -   1709092 gaaagaaaagaaa----
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17274999 13 - 121039945 gaaagaaaagaaa----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60949091 13 + 169600520 AAAAGAAAAGAAA----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108475472 13 - 171882078 AAAAGAAACGAAA----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        92619 13 -   2311642 aaaagaaaagaaa----
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        84698 13 -   1987038 AAAAGAAAAGAAA----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21165795 13 -  24206276 aaaagaaaagaaa----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       107995 13 -   1397330 AAAAGAAACGAAA----
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       105475 13 -   1784207 AAAAGAAAAGAAA----
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22305980 17 + 158406734 aaaaaaaaaaaaaagga
i calJac3.chr6              C 0 I 7
s saiBol1.JH378108           50541025 17 +  54856640 aaaaaaaaaaaaaaaaa
i saiBol1.JH378108          C 0 I 288
s cebCap1.NW_016107610v1       685343 15 -   2910086 ggaaattaaaagaaa--
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40709646 13 +  42888418 AAAGGAAATGAAA----
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1903569 511 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e otoGar3.GL873530             689583 16079 -  36342412 I

a score=765763.000000
s hg38.chr15_KI270850v1_alt    403860 126 +    430880 cgaaacCCAAGGATATTTAAGACCTAGTCCTTACACATTCTTCAAGAGACTTACAGTATAAACAGAAAACCTAGT----TCAACTCTTTA---AAATATAAgtgtgtgtgtgtgtgtgtgtg--------------tgtgtgtgtgt
s panTro5.chr15              63556595 126 +  83230942 agaaaCCCAAGGATATTTAAGACCTAGTCCTTACATATTCTTCAAGAGACTTACAGTATAAACAGAAAACCTAGT----TCAACTCTTTA---AAATATAAgtgtgtgcgtgtgtttgtgtg--------------tgtatatatat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80513640 140 +  99763055 agaaaCCCAAGGATATTTAAGACCTAGTCCTTACATATTCTTCAAGAGACTTACAGTATAAACAGAAAACCTAGT----TCAACTCTTTA---AAATATAAgtgtgtgtgtgtgtttgtgtgtatatatatatatatatatatatat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       113767 106 -   1709092 cgaaaCCCAAGGGTATTTAAGACCTAGTCCTTACACATTCTTCAAGAGACTTACAGTATAAACAGAAAACCTAGT----TCAACTCTTTA---AAATATAAATGTGTGTGTG----------------------------------T
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17275012 105 - 121039945 cgaaaCCCACGGACATTTAAGACCTAGTCCTTACATATTCTTCAAGAGACTTACAGTCTAAACAGAAAACCTGGT----TCAACTCTTTA---AAATATAAATGTGTGTGTG-----------------------------------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60949104 124 + 169600520 CGAAACCCAAGGATATTTAAGACCTAGTCTTTACATATTTTTCAGAAGACTTACAGTCTAAACAGAAAACCTTGTTCAATCAACTCTTTA---AAATACAAAtgtgtgtgtg------tgtg--------------tgtATATACAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108475485 124 - 171882078 CGAAACCCAAGGATATTTAAGACCTAGTCTTTACATATTTTTCAAAAGACTTACAGTCTAAACAGAAAACCTTGTTCAATCAACTCTTTA---AAATACAAATATGTGTGTG------TGTG--------------TGTATATACAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        92632 124 -   2311642 tgaaaCCCAAGGATATTTAAGACCTAGTCTTTACATATTTTTCAAAAGACTTACAGTCTAAACAGAAAACCTTGTTCAATCAACTCTTTA---AAatacaaatatgtgtgtg------tgtg--------------tatatatacat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        84711 124 -   1987038 CGAAACCCAAGGATATTTAAGACCTAGTCTTTACATATTTTTCAAAAGACTTACAGTCTAAACAGAAAACCTTGTTCAATCAACTCTTTA---AAATACAAAtgtgtgtgtg------tgtg--------------tatgtgtgtat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21165808 102 -  24206276 cgaaaCCCAAGGTTATTTAAGACCTAGTCTTTACATATTTTTCAAAAGACTTACAGTCTAAACAGAAAACCTTGTTCAATCAACTCTTTA---AAATAC------------------------------------------GTGTGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       108008 124 -   1397330 CGAAACCCAAGGATATTTAAGACCTAGTCTTTACATATTTTTCAAAAGACTTACAGTCTAAACAGAAAACCTTGTTCAATCAACTCTTTA---AAATACAAATATGTGTGTG------TGTG--------------TATGTGTGTAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       105488 114 -   1784207 CGAAACCCAAGGATATTTAAGACCTAGTCTTTACATATTTTTCAAGAGACTTACAGTCTAAACAGAAAACCTTGTTCAATCAACTCTTTA---AAATATAAATATGTGTGTG------TGTG------------------------T
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22306004 121 + 158406734 TGAAACTCAAGGATATTTAAGACCCAGTCCTTACATATTCTTT--GAGACTTTCAGTCTAAACAGAAAACCTAGT----TCAACTCTTAATGTAAGTATATATTtgtgtgtg------tgtg--------------tgtgtgtgtgt
i calJac3.chr6              I 7 C 0
s cebCap1.NW_016107610v1       685358 117 -   2910086 tgaaacgcaa----aTTTAAGACCTAGTCCTTAAGTATTCTTC--GAGACTTTCAGTCTAAACAGAAAACCTAGT----TCAACTCTTAATGTAAGTATATATTTTtgtgtg------tgtg--------------tgtgtgtgtgt
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40709659 113 +  42888418 TGAAACTCAAGGATATTTAAGATCTAGTCCTTAAGTATTCTTC--GAGACTTTCAGTCTAAACAGAAAACCTAGT----TCAACTCTTAATGTAAGTATATATTTGTGTATA------TATA--------------TAT--------
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1903569 511 +   3943991 I
e canFam3.chr3               54455682 18935 +  91889043 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e saiBol1.JH378108           50541042 288 +  54856640 I

a score=2992495.000000
s hg38.chr15_KI270850v1_alt    403986 351 +    430880 ATATAT--ATATAT---------------------------------------GACCTCAGCCAACGCTCTCACAACTGCATCTTTATATACCCACACTATCACAATCACTATCaccatttagtaagtg----cagtt-atgtgcatcattgtagatagtattcaatacaaatctt-atttaagcttcacaaaacccctacaaatgggtactatttctacctatgtgtctaaagaggaaatttaaactc-agagtgtaagccaaggtcacagcaagtaagtagcacgaccagaatttgttctcaggtcatctgcattcagagcctgtaccctatcTTTGTTTGGGTTTATTATGAAACGGACAA--------TG-TTTTTTCAAAACTGTACCCTATCCTCCCATTTT-
s panTro5.chr15              63556721 355 +  83230942 atatat--atatat---------------------------------------GACCTCAGCCAATGCTCTCACAACTGCATCTTTATATACCCACACTATCACAATCACTATCaccatttagtaagtg----cagtt-atgtgcatcattgtagatagtattcaatacaaatctt-atttaagcttcacaaaacccctacaaatgggtactatttctacctatgtgtctaaagaggaaatttaaactc-aaagtgtaagccaaggtcacagcaagtaagtagcacgaccagaatttgttctcaggtcatctgcattcagagcctgtaccctatcTTTCTTTGGGTTTATTATGAAACGGACAAAC----AATG-TTTTTTCAAAACTGTACCCTATCCTCCCATTTT-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80513780 355 +  99763055 atatat--atatat---------------------------------------GACCTCAGCCAATGCTCTCACAACTGCATCTTTATATACCCACACTATCACAATCACTATCaccatttagtaagtg----cagtt-atgtgcatcattgtagatagtattcaatacaaatctt-atttaagcttcacaaaacccctacaaatgggtactatttctacctatgtgtctaaagaggaaatttaaactc-aaagtgtaagccaaggtcacagcaagtaagtagcacgaccagaatttgttctcaggtcatctgcattcagagcctgtaccctatcTTTGTTTGGGTTTATTATGAAACGGACAAAC----AATG-TTTTTTCAAAACTGTACCCTATCCTCCCATTTT-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       113873 355 -   1709092 ATATAT--ATATAT---------------------------------------GACCTCAGCCAGTGCTCTCACAACTCCATCTTTATATACCCACACTATCACAATCACTATCaccatttagtaagtg----cagtt-atgtgcatcattgtagatagtattcaatacaaatctt-atttaagcttcacaaaacccctacaaatgggtactatttctacctatgtgtctaaagaggaaatttaaactc-agagtgtaagccaaggtcacagcaagtaagtagcaccaccagaatttgttctcaggtcatctgcattcagagcctgtaccctatcTTTGTTTGGGTTTATTATGAAACGGACAAAC----AATG-TTTTTTCAAAACTGTACCCTATCCTCCCATTTT-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17275117 354 - 121039945 -TATAC--ATGTAT---------------------------------------GACCTCAGCCAATGCTCTCACAACTGCATCTTTATATACCCACACTATCACAATCACTATCACCATTTAGTAAGTG----CAGTT-CTATGCATCATTGTAGATAGTATTCAATACAAatctt-atttaagcttcacaaaacccctacaaatgggtactatttctacctatgtgtctaaagaggaaatttaaactc-agagtgtaagccaaggtcacagcaagtaagtagcacgaccagaatttgttctcaggtcatctgcattcagagcctgtaccctatcTTTGTTTGGGTTTATTATGAAATGGACAAAC----AATG-TTTTTTCAAAACTGTACCCTATCGTCCCGTTTT-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60949228 344 + 169600520 ATATATACACACAT---------------------------------------GACCTCAGCCAATGCTCTCACAACTGCATCTATATATATCCACACTAT-ACAATCACCATCaccatttagtaagtg----cagtt-atgtgcaccattgtagattgtattcaatacaaacctt-atttaagtttcacaaaactcccacaaatgggtactattactacctatctgtctaaagatgaaatt--------------taagccaaggtcacagcaagtaagtagcacaaccagaatttgttctcaggtcatctgcattcagagcctgtaccctacctttgtttggGTTTATTATGAAATGGACGAAC----AATGTTTTTTTCAAAACTGTACCCTATCCTCCCATTTT-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108475609 344 - 171882078 ATATATACACACAT---------------------------------------GACCTCAGCCAATGCTCTCACAACTGCATCTATATATACCCACACTAT-ACAATCACCATCaccatttagtaagtg----cagtt-atgtgcaccattgtagattgtattcaatacaaacctt-atttaagtttcacaaaactcccacaaatgggtactattactacctatctgtctaaagatgaaatt--------------taagccaaggtcacagcaagtaagtagcacaaccagaatttgttctcaggtcatctgcattcagagcctgtaccctacctttgtttggGTTTATTATGAAATGGACGAAC----AATGTTTTTTTCAAAACTGTACCCTATCCTCCCATTTT-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        92756 342 -   2311642 atatat--aCACAT---------------------------------------GACCTCAGCCAATGCTCTCACAACTGCATCTATATATACCCACACTAT-ACAATCACCATCaccatttagtaagtg----cagtt-atgtgcaccattgtagattgtattcaatacaaacctt-atttaagtttcacaaaactcccacaaatgggtactattactacctatctgtctaaagatgaaatt--------------taagccaaggtcacagcaagtaagtagcacaaccagaatttgttctcaggtcatctgcattcagagcctgtaccctacctttgtttggGTTTATTATGAAATGGACGAAC----AATGTTTTTTTCAAAACTGTACCCTATCCTCCCATTTT-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        84835 342 -   1987038 atatat--atACAT---------------------------------------GACCTCAGCCAATGCTCTCACAACTGCATCTATATATACCCACACTAT-ACAACCACCATCaccatttagtaagtg----cagtt-atgtgcaccattgtagattgtattcaatacaaacctt-atttaagtttcacaaaactcccacaaatgggtactattactacctatctgtctaaagacgaaatt--------------taagccaaggtcacagcaagtaagtagcacaaccagaatttgttctcaggtcatctgcattcagagcctgtaccctacctttgtttggGTTTATTATGAAATGGACGAAC----AATGTTTTTTTCAAAACTGTACCCTATCCTCCCATTTT-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21165910 339 -  24206276 GTGTAT--ATACAT---------------------------------------GACCTCAGCCAATGCTCTCACAACTGCATCTATATATACCCACACTAT-ACAATCACCATCaccatttagtaagtg----cagtt-atgtgcaccattgtagattgtattcaatacaaacctt-atttaagtttcacaaaactcccacaaatgggtactattactacctatgtgtctaaagacgaaatt--------------taagccaaggtcacagcaagtaagtagcacaaccagaatttgttctcagatcatctgcattcagagcatgtaccctACCTTTGTATGGGTTTATTATGAAATGGACGAAC-------GTTTTTTTTAAAACTGTACCCTATCCTCCCATTTT-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       108132 342 -   1397330 ATATAT--ATACAT---------------------------------------GACCTCAGCCAATGCTCTCACAACTGCATCTATATATACCCACACTAT-ACAATCACCATCaccatttagtaagtg----cagtt-atgtgcaccattgtagattgtattcaatacaaacctt-atttaagtttcacaaaactcccacaaatgggtactattactacctatctgtctaaagacgaaatt--------------taagccaaggtcacagcaagtaagtagcacaaccagaatttgttctcaggtcatctgcattcagagcctgtaccctacctttgtttggGTTTATTATGAAATGGACGAAC----AATGTTTTTTTCAAAACTGTACCCTATCCTCCCATTTT-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       105602 343 -   1784207 GTATAT--ATATAT---------------------------------------GACCTCAGCCAATGCTCTCACAATTGCATCTATATATACCCACACTAT-ACAATCACTATCaccatttagtaagtg----cagtt-atgtgcaccattgtagattgtattcaatacaaatcttaatttaagtttcacaaaactcccacaaatgggtactattactacctatgtgtctaaagacgaaatt--------------taagccaaggtcacaacaagtaagtagcacaaccagaatttgttctcaggtcatctgcattcagagcctgtaccctacctttgtttggGTTCATTATGAAATGGACGAAC----AATGTTTTTTTCAAAACTGTACCCTATCCTCCCATTTT-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22306125 357 + 158406734 gtgtgt--gtgtgtgtAT-----------------------------------AACCTTAG-TAATGCTCTCACAACTTCATCTTTATATACCCACACTAACACAATCGCTatcaccatttagtaagta----cagtt-atgtgcatcattttaagtattattcaatacaaatatt-atttaaacttcacaaaacccctacaaatgggtactattactacctatatgtctaaagaggaaatttaaactc-agagtgtaagccaaggtcacagcaagtaagcagcacaaccagaatttgttctcaggtcatctacatccagagcctgtaccctACCTTTGTGTGGGTTTATTATGAAATGGACAAAC----AATG--TTTTTCAAAACTATATCCTATCTTCCCATTTT-
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107610v1       685475 393 -   2910086 gtgtgt--gtgtgtgtgtgtgtggtgtgtgtCTGTATATATAAATACATATAAAACCTCAG-TAATGCTCTCACAACTTCATCTTTATATACCCACACTATCACAATCACTATCaccatttagtaagtg----cagtt-atgtgcatcattgtaagtagtattcaatacaaatatt-atttaagcttcacaaaacccctacaaatgagtactactactacctatatgtctgaagaggaaatttaaactcaagagtgtaagccaaggtcacagcaagtaagcagcacaaccagaatttgttcttgggtcatctacatccagagcctgtaccctACCTTTGTGTGGGTTTATTATGAAACGGACAACC----AATG--TTTTTCAAAACTATACCCTATCCTCCCATTTT-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40709772 338 +  42888418 -----------------------------------------------------GACCTCAG-TAATGCTCTGACAACT---TCTTTATATACCCACACTATCACAATCACTatcaccatttagtaagtg----cagtt-atgtgcatcattttaagtagtattcaatacaaatatt-atttaagcttcacaaaacccctacaaatgggtactattactacctatatgtctaaagaggaaatttaaactc-agagtataagccaaggtcacagcaagtaagcagcacaaccagaatttgttctcgggtcatctatatccagagcctgtaccctACCTTTGTGTGGGTTTATTATGAAATGGACAAAC----AATG--TTTTTCAAAACTATACCCTATCCTCCCATTTT-
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1904080 339 +   3943991 ataaaa--atataC---------------------------------------AATCCTAGCCA-TGCTCTCACAGCTGCAT-TTTCTATATCCCCACCATCACATTCATTActgccatttagtgaataagatcaattaatatgcattattctaagcagta---aaaacatttttt-atttgagtttcac-aaacccccataaat---------tactatttatgttacagttggggaaacataagcac-agatagttgcacaaggtcagaacaagtaagtagtacaactagca---gttttcaggtaatctgaatccagagc-TGTA-------TGTGTATAGTTTTATTATGAAATGGGAAAATTCAGTATG-CTTTCTCAAAACTGTACTCTAACCTTGGGATCTG
i dasNov3.JH570731          I 511 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54455682 18935 +  91889043 I
e otoGar3.GL873530             689583 16079 -  36342412 I
e saiBol1.JH378108           50541042 288 +  54856640 I

a score=1171363.000000
s hg38.chr15_KI270850v1_alt    404337 123 +    430880 AAGAA--TGTATATGTTTACACCACCACATGATGGATCCACAAATAAACA--CGAAGAGCCAAGAAGGACCTTGCTTCATCTCACAGATT--GACAGACTACAGAACATTGGAGGCAGGACAGTGTTAT
s panTro5.chr15              63557076 123 +  83230942 AAGAA--TGTATATGTTTACAACACTACATGATGGATCCACAAATAAACA--CGAAGAGCCAAGAAGGACCTTGCTTCATCTCACGGATT--GACAGACTACAGAACATTGGAGGCAGGACAGTGTTAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80514135 123 +  99763055 AAGAA--TGTATATGTTTACAACACTACATGATGGATCCACAAATAAACA--CGAAGAGCCAAGAAGGACCTTGCTTCATCTCACGGATT--GACAGACTACAGAACACTGGAGGCAGGACAGTGTTAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       114228 123 -   1709092 AAGAA--TGTGTATGTTTACAACACCACATGATGGATCCACAAATAAACA--CGAAGAGCCAAGAAGGACCTTGCTTCATCTCACGGATT--GACAGACTACAGAACATTGGAGGCAGGACAGTGTTAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17275471 123 - 121039945 AAGAA--TGTATATGTTTACAACACCACATGATGGATCCACAAATAAACA--GGAAGAGCCAAGAAGGACCTTGCTTCATCTCACGGATT--GACAGACTACGGAACATTGGAGGCAGGACAGTGTGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60949572 124 + 169600520 AAGAATATATATATGTTTACAACACCACACGACGGATCCACAAATAAACA--GAAAGAGCCAAGAAGGACCTTGCTTTATTTCAC-GATT--GACACACTACAGAACATGGGAAGCAGGACAGTGTGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108475953 120 - 171882078 AAG----TATATATGTTTACAACACCACATGATGGATCCACAAATAAACA--GAAAGAGCCAAGAAGGACCTTGCTTTATTTCAC-GATT--GACACACTACAGAACATGGGAAGCAGGACAGTGTGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        93098 124 -   2311642 AAGAATATATATATGTTTACAACACCACATGATGGATCCACAAATAAACA--GAAAGAGCCAAGAAGGACCTTGCTTTATTTCAC-GATT--GACACACTACAGAACATGGGAAGCAGGACAGTGTGAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        85177 124 -   1987038 AAGAATATATATATGTTTACAACACCACATGATGGATCCACAAATAAACA--GAAAGAGCCAAGAAGGACCTTGTTTTATTTCAC-GATT--GACACACTACAGAACATGGGAAGCAGGACAGTGTGAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21166249 124 -  24206276 AAGAATATATATATGTTTACAACACCACATGATGGATCCACAAATAAACA--GAAAGAGCCAAGAAGGACCTTGCTTTATTTCAC-GATT--GACACACTATAGAACATGGGAAGCAGGACAGTGTGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       108474 124 -   1397330 AAGAATATATATATGTTTACAACACCACATGATGGATCCACAAATAAACA--GAAAGAGCCAAGAAGGACCTTGTTTTATTTCAC-GATT--GACACACTACAGAACATGGGAAGCAGGACAGTGTGAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       105945 123 -   1784207 AAGAA--TATATATGTTTACAACACCACATGATGGATCCACAAATAAACA--GAAAGAGCCAAGAAGGACCTTGCTTTATCTCACGGATT--GACACACTACAGAACATGGGAAGCAGGACAGTGTGAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22306482 119 + 158406734 AAGAA--TGTATATGCTTACAACACCACATGGTGGAACCAC----AAACA--GGAAGAGTCAAGAAGGACCTTGCTTCATCTCATGGATT--GGCAGATTACAGAACACAGGAGGCAGGACAGTGTGAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50541330 119 +  54856640 aagaa--TGTATATGCTTTCAACACCACATGGTGGAACCAC----AAACA--CGAAGAGTCAAAAAGGACCTTATATCATCTCACGAACT--GGGAGACTACAGAACACGGGAGGCAGGACAGTGTGAG
i saiBol1.JH378108          I 288 C 0
s cebCap1.NW_016107610v1       685868 119 -   2910086 AAGAA--TGTATATGCTTACAACACCACATGGTGGAACCAC----AAACA--GGAAGAGTCAAGGAGGACCTTGCTTCATCTCACGGATT--GGCAGACTACAGAACACAGGAGGCAGGACAGTGTGAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40710110 119 +  42888418 AAGAA--TGTATATGCTTACAACACCACATAGTGGAACCAC----AAACA--GGAAGAGTCAAAAAGGACCTTGCTTCATCTCACGGATT--GGCAGACTACAGAACACAGGAGGCAGAACAGTGTGAG
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1904419 127 +   3943991 GAAGA--TATATGGATTTACAATACCACATAGTGGGTTCACGAACAAACAGGGGAAGAGCCAAGAAGAACCTTGCTCTATGTCATAGAGTCAAATAAAATATGGAACATGGGAGACTGAAGAATATGAA
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54455682 18935 +  91889043 I
e otoGar3.GL873530             689583 16079 -  36342412 I

a score=889942.000000
s hg38.chr15_KI270850v1_alt    404460  87 +    430880 -----AAAGTTTCTGAAGTGACAACCAAGCCAACTTTGAAT-AAAATAAT--TTTTTCTAGGAAGACA---GTCAATTTAGT----TG---------TCAACTATGTAGCA
s panTro5.chr15              63557199  87 +  83230942 -----AAAGTTTCTGAAGTGACAACCAAACCAACTTTGAAT-AAAATAAT--TTTTTCTAGGAAGACA---GTCAATTTAGT----TG---------TCAATTATGTAGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80514258  87 +  99763055 -----AAAGTTTCTGAAGTGACAACCAAACCAACTTTGAAT-AAAATAAT--TTTTTCTAGGAAGACA---GTCAATTTAGT----TG---------TCAATTATGTAGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       114351  87 -   1709092 -----AAAGTTTCTGAAGTGACAACCAAGCCAACTTTGAAT-AAAATAAT--TTTTTCTAGGAAGACA---GTCAATTTAGT----TG---------TCAACAATGTAGCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17275594  87 - 121039945 -----AAAGTTTCTGAAGTGACAACCAAGCCAACCTTGAAT-AAAATAAT--TTTTTCTAGGAAGACA---GTCAATTTAGT----TG---------TCAACTATGTAGCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60949696  86 + 169600520 -----AAAATTTCTGAAGTGACAACCAAGTCAACCTTGAAT-AAAAGAA---TTCTTCCAGGAAGACA---GTCAATTTAGT----TG---------TCAACTATGTAGCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108476073  86 - 171882078 -----AAAATTTCTGAAGTGACAACCAAGTCAACCTTGAAT-AAAAGAA---TTCTTCCAGGAAGACA---GTCAATTTAGT----TG---------TCAACTATGTAGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        93222  86 -   2311642 -----AAAATTTCTGAAGTGACAACCAAGTCAACCTTGAAT-AAAAGAA---TTCTTCCAGGAAGACA---GTCAATTTAGT----TG---------TCAACTATGTAGCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        85301  86 -   1987038 -----AAAATTTCTGAAGGGACAACCAAGTCAACCTTGAAT-AAAAGAA---TTCTTCCAGGAAGACA---GTCAATTTAGT----TG---------TCAACTATGTAGCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21166373  86 -  24206276 -----AAAATTTCTGAAGTGACAACCAAGTCAACCTTGAAT-AAAAGAA---TTCTTCCAGGAAGACA---GTCAATTTAGT----TG---------TCAACTACGTAGTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       108598  86 -   1397330 -----AAAATTTCTGAAGTGACAACCAAGTCAACCTTGAAT-AAAAGAA---TTCTTCCAGGAAGACA---GTCAATTTAGT----TG---------TCAACTATGTAGCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       106068  86 -   1784207 -----AAAATTTCTGAAGTGACAACCAAGTCAACCTGGAAT-AAAAGAA---TTCTTCCAGGAAGACA---GTCAATTTAGT----TG---------TCAACTATCTAGCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22306601  88 + 158406734 -----AAAGTTTCTGAAGTGACAACCAAGCCAACCGTGAAT-AAAAGGA---TTTTTCTGGGAAGACAA-AGTCAATTTAGT----TG---------CCAACAATGTAGCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50541449  89 +  54856640 -----AAAGTTTCTAAAGTGGCAACCAAGCCAACCTTGAATAAAAAGAA---CTTTTCTAGGAAGACAA-AGTCAATTTAGT----TG---------CCAACAATGTAGCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       685987  88 -   2910086 -----AAAGTTTCTGAAGTGGCAACCAAGCCAACCTTGAAT-AAAAGAA---ATTTTCTAGGAAGACAA-AGTCAATTTAGT----TG---------CCAACAATGTAGCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40710229  88 +  42888418 -----AAAGTTTCTGAAGTGACAACCAAGCCAACCTTGAAT-AAAAGAA---TTTTTCTAGGAAGACAA-GGTCAATTTAGT----TG---------CCAACAATGTAGCA
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54474617 105 +  91889043 -----AAATTTTCAGAGATGATAACCAAGCCATTCTTGAAA-AAAAGAAGGATTTTTCTAGGCAGATAATATTCAATTTAGTATTCTGCTTAACAGTTCAGCTATGTAGCA
i canFam3.chr3              I 18935 C 0
s dasNov3.JH570731            1904546  78 +   3943991 AAAAAAAGACTGCAGAAATGACAACCAAGCCAACCTTGAAA-GAGAGAA---------------AATA---TTCAATTTAG-----TG---------TCTGCCATGTAGta
i dasNov3.JH570731          C 0 I 23143
e mm10.chr7                  81404089 30523 + 145441459 I
e otoGar3.GL873530             689583 16079 -  36342412 I

a score=1639387.000000
s hg38.chr15_KI270850v1_alt    404547 154 +    430880 GAAGAGCATTCATTGCACAACTTCATCT--GTCAGTGATTTTAATTATATAATATGCATGGAATGTCAAGAA--ACAGcagacagaatggcataaagggaaagaaccctgggacaca-attctagaaacttactctgggttgatgccagatcatATATG
s panTro5.chr15              63557286 153 +  83230942 GAAGAGCATTCATTGCACAACTTCATCT--GTCAGTGATTTTAATTATATAATATGCATGGAATGTCAAGAA--ACAGcagacagaatggcataaaggg-aagaaccctgggacaca-attctagaaacttactctgggttgatgccagatcatatatG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80514345 153 +  99763055 GAAGAGCATTCATTGCACAACTTCATCT--GTCAGTGATTTTAATTATATAATATGCATGGAATGTCAAGAA--ACAGcagacagaatggcataaaggg-aagaaccctgggacaca-attctagaaacttactctgggttgatgccagatcatATATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       114438 156 -   1709092 GAAGAGCATTCACTGCACAACTTCATCTAAGTCCGTGATTTTAATTATATAATATGCATGGAATGTCAAGAA--ACAGcagacagaatggcataaagggaaagaaccctgggacaca-attctagaaacttactctgggttgatgccagatcatATATG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17275681 156 - 121039945 GAAAAGCATTCATTGCACAACTTCATCTAAGTCAATGATTTTAATTATATAATATGCATGGAATGTCAAGAA--ACAGcagacagaatggcataaaggaaaagaaccctgggacaca-attctagaaacttactctgggttgatgccagatcatATATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60949782 156 + 169600520 GAAGAGCATTCGTTGCACAACTTCATCTAAGTCAATGATTTTAATTATATAATATGCATGGAATGTCAAGAA--ACAGcagacagaatggcataaaggaaaagaaccctgggacaca-attctagaaactttctctgggttgatgccagatcatATATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108476159 156 - 171882078 GAAGAGCATTCGTTGCACAACTTCATCTAAGTCAATGATTTTAATTATATAATATGCATGGAATGTCAAGAA--ACAGcagacagaatggcataaaggaaaagaaccctgggacaca-attctagaaactttctctgggttgatgccagatcatATATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        93308 156 -   2311642 GAAGAGCATTCGTTGCACAACTTCATCTAAGTCAATGATTTTAATTATATAATATGCATGGAATGTCAAGAA--ACAGcagacagaatggcataaaggaaaagaaccctgggacaca-attctagaaactttctctgggttgatgccagatcatATATG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        85387 156 -   1987038 GAAGAGCATTCGTTGCACAACTTCATCTAAGTCAATGATTTTAATTATATAATATGCATGGAATGTCAAGAA--ACAGcagacagaatggcataaaggaaaagaaccctgggacaca-attctagaaactttctctgggttgatgccagatcatATATG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21166459 156 -  24206276 GAAGAGCATTCATTGCACAACTTCATCTAAGTCAATGGTTTTAATTATATAATATGCATGGAATGTCAAGAA--ACAGCAGACAGAATGGCATAAAGCAAAAGAACCCCGGGACACA-ATTCTAGAAACTTTCTCTGGGTTGATGCCAGATCATATATG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       108684 156 -   1397330 GAAGAGCATTCGCTGCACAACTTCATCTAAGTCAATGATTTTAATTATATAATATGCATGGAATGTCAAGAA--ACAGcagacagaatggcataaaggaaaagaaccctgggacaca-attctagaaactttctctgggttgatgccagatcatATATG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       106154 156 -   1784207 GAAGAGTATTCGTTGCACAACTTCATCTAAGTCAATGATTTTAATTATATAACATGCATGGAATGTCAAGAA--ACAGCAGACAGAATGGCATAAAGGAAAAGAACCCTGGGACACA-ATTCTAGAAACTTTCTCTGGGTTGATGCCAGATCATATATG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22306689 155 + 158406734 GAAGAGCACTCATTGCATGACTTCATCTAAATCAATGATTTTAATTATATAATACGCATGGAATGTAAAGAA--ACATCAGACAGGATCACATAAAGGATAAGACCCCTGGGACACA-ATT-TAGAAACTTTCTCTGGGTTGATGCCAGATCACATATG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50541538 148 +  54856640 GAAGAGCACTCATTGCATGACTTCATCTAAATCAATGATTTTAATTATGTAATATGCATGGAATGTCAAGAA--ACAtcagacagaatgacataaaggatacgacccctgggacaca-att-tagaaactttctcT-------CACCAGATCACATATG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       686075 155 -   2910086 GAAGAGCACTCATTGCATGACTTCATCTAAATCAATGATTTTAATTATATAATATGCATGGAATGTGAAGAA--ACAtcagacagaatgacataaaggataagacccctgggacaca-att-tagaaactttctctgggttgaTGCCAGCTCACATATG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40710317 155 +  42888418 GAAGAGCACTCATTGCATTACTTCATCTAAATCAATGATTTTAATTATATGATACGCATGGAATGTCAAGAA--ACAtcagacagaatgacataaaggataagacccctgggacaca-att-tagaaactttctccgggttgatgccagatcaCACATG
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54474722 150 +  91889043 GAACAGCATTTCCTGCATGATTTCACCTAAGCCAACAATTTTAATTATATAA----AATGGAATCTCAAGAAACACAACAaatggaacaggataa-----aagaaccctgagacccaggttctagagatctttcctaggttgataccagatcATATATG
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e otoGar3.GL873530             689583 16079 -  36342412 I

a score=5397925.000000
s hg38.chr15_KI270850v1_alt    404701 487 +    430880 CTACACGTATTATTTTAACTTCAGAAAATATTTTATAATATAAAGAAAACAAAATC-AAGTTGGATTTACAGCTATATC-AACTGGaattttgaagtatgacaacatctagagtctacatggaatgtgactg-aaaa-------ctcatgaaatcctagcaggattataaa-ctggt-aaatgcactttgaaaaagta-----cccagcaacttgaagtgtgaagacaatat--accaaactctgcaattaacttctaggtacatact-c-aaggaagctcttgtgatgtgggcac-aggagacttaaacaaggatgttcaccaaaatactgtttataatagcaaaaa-atatat--------atttacc-taaatacagcaaaaaatatacacctaaacatttacca--agaggaatattgtatatatttatgtaaaatattactac---aaagcaattaaaatgtattgattttacttacaaataactatcaatatgtacacattataaatat---gacacatgg
s panTro5.chr15              63557439 486 +  83230942 CTACACGTATTATTTTAACTTCAGAAAATATTTTATAATATAAAGAAAACAAAATC-AAGTTGGATTTACAGCTATATC-AACTGGaattttgaagtatgacaatatctagagtctacatggaacgtgactg-aaaa-------ctcatgaaatcctagcaggattataaa-ctggt-aaatgcactttgaaaaagta------tcagcaacttgaagcgtgaagacaatat--accaaactctgcaattaacttctaggtacatact-c-aaggaagctcttgtgatgtgggcac-aggagacataaacaaggatgttcaccaaaatactgtttataatagcaaaaa-atatat--------atttacc-taaatacagcaaaaaatatacacctaaacatttacca--agaggaatattgtatatatttatgtaaaatattactac---aaagcaattaaaatgtattgattttacttacaaataactatcaatatgtacacattgtaaatat---gacacatgg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80514498 475 +  99763055 CTACACGTATTATTTTAACTTCAGAAAATATTTTATAATATGAAGAAAACAAAatc-aagttgg------------atc-aactggaattttgaagtatgacaatatctagagtctacatggaacgtgactg-aaaa-------ctcatgaaatcctagcaggattataaa-ctggt-aaatgcactttgaaaaagta-----cccagcaacttgaagcgtgaagacaatat--accaaactctgcaattaacttctaggtacatact-c-aaggaagctcttgtgatgtgggcac-aggagacataaacaaggatgttcaccaaaatactgtttataatagcaaaaa-atatat--------atttacc-taaatacagcaaaaaatatacacctaaacatttacca--agaggaatattgtatatatttatgtaaaatattactac---aaagcaattaaaatgtattgattttacttacaaataactatcaatatgtacacattataaatat---gacacatgg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       114594 487 -   1709092 CTACACGTATTATTTTAACTTCAGAAAATATTTTATAATATAAAGAAAACAAAATC-AAGTTGGATTTACAGCTATATC-AACTGGaattttgaagtatgacaatatctagagtctacatggaatgtgactg-aaaa-------ctcatgaaatcctagcaggattataaa-ctggt-aaattcactttgaaaaagta-----cccagcaacttgaagtgtgaagacaatat--accaaactctgcaattaacttctaggtacatact-c-aaggaagctcttgtgatgtgggcac-aggagacataaacaaggatgttcaccaaaatactgtttataattgcaaaaa-atatat--------atttacc-taaatacagcaaaaaatatatacctaaacatttacca--agaggaatattgtatatatttatgtaaaatattactac---aaagcaattaaaatgtattgactttacttacaaataactatcaatacgtacacattataaatat---gatacatgg
i gorGor5.CYUI01015556v1    C 0 I 1
s nomLeu3.chr6               17275837 485 - 121039945 CTACACGTGTTATTTTAACTTCAGAAAATATTTTATAATATAAAGAAAACAAAATC-AAGTTGGATTTACAGCTATATC-AACTGGaattttgaagtatgacaatatctagagtctacatggaatgtgcctg-aaaa-------ctcatgaaatcctagcaggattataaa-ctggt-aaatgcactttgaaaaagta-----cccagcaacttgaagtgtgaagacagtac--accaaactctgcaattaacttctaggtacatact-c-aaggaagctcttgtgatgtgggaac-aggaggcataaacaaggatgttcaccaaaatactgtttataacagcaaaaa-atatat--------atttacc-taaatacagcaaaaaatatatacctaaacatttacca--agaggaatattgtatatatttatgtaaaatattactac---aaagcaattaaaatgtattgattttacttacaaataactatcaatatgtacacattataa--at---gatacatgg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60949938 496 + 169600520 CTACATGTATTATTTTAACTTCAGAAAGTATTTTATAATATAAAGAAAACAAAATCAAAGTTGGATTTACAGCTGTATC-AACTGGAATTTTGaagtatgacaatacctagagtctacaaggaatgtgactg-aaaa-------ctcatgaaatcctagcaggattataaa-ctggt-aaacgcactttgaaaaagta-----cccagcaacttgaagtgtgaagacagtat--accaaactcggcaattaacttctaggtacatact-c-aaggaagctcttgtgatgtgtgcac-aggagacataaacaaggatgttcaccaaaatattgtttataatagcaaaaa-atatatacttaaagatttgcc-taaatacagcaaaaaatacatacctaaccatttacca--agagggatattgtatatagttatgtaaaatattactac---aaagcaattaaaatgtactgattttactcacaaataactatcaatatgtacacattataaatag---gatacatgg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108476315 496 - 171882078 CTACATGTATTATTTTAACTTCAGAAAGTATTTTATAATATAAAGAAAACAAAATCAAAGTTGGATTTACAGCTGTATC-AACTGGaattttgaagtatgacaatacctagagtctacaaggaatgtgactg-aaaa-------ctcatgaaatcctagcaggattataaa-ctggt-aaacgcactttgaaaaagta-----cccagcaacttgaagtgtgaagacagtat--accaaactcggcaattaacttctaggtacatact-c-aaggaagctcttgtgatgtgtgcac-aggagacataaacaaggatgttcaccaaaatattgtttataatagcaaaaa-atatatacttaaagatttgcc-taaatacagcaaaaaatacatacctaaccatttacca--agagggatattgtatatatttatgtaaaatattactac---aaagcaattaaaatgtactgattttactcacaaataactatcaatatgtacacattataaatag---gatacatgg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        93464 496 -   2311642 CTACATGTATTATTTTAACTTCAGAAAGTATTTTATAATATAAAGAAAACAAAATCAAAGTTGGATTTACAGCTGTATC-AACTGGAATTTTGaagtatgacaatacctagagtctacaaggaatgtgactg-aaaa-------ctcatgaaatcctagcaggattataaa-ctggt-aaacgcactttgaaaaagta-----cccagcaacttgaagtgtgaagacagtat--accaaactcggcaattaacttctaggtacatact-c-aaggaagctcttgtgatgtgtgcac-aggagacataaacaaggatgttcaccaaaatattgtttataatagcaaaaa-atatatacttaaagatttgcc-taaatacagcaaaaaatacatacctaaccatttacca--agagggatattgtatatatttatgtaaaatattactac---aaagcaattaaaatgtactgattttactcacaaataactatcaatatgtacacattataaatag---gatacatgg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        85543 496 -   1987038 CTACATGTATTATTTTAACTTCAGAAAGTATTTTATAATATAAAGAAAACAAAATCAAAGTTGGATTTACAGCTGTATC-AACTGGaattttgaagtatgacaatacctagagtctacaaggaatgtgacta-aaaa-------ctcatgaaatcctagcaggattataaa-ctggt-aaacgcactttgaaaaagta-----cccagcaacttgaagtgtgaagacagtat--accaaactctgcaattaacttctaggtacatact-c-aaggaagctcttgtgatgtgtgcac-aggagacataaacaaggatgttcaccaaaatattgtttataatagcaaaaa-atATATACTTAAAGATTTGCC-TAAATACAGCAAAAAATACATACCTAATCATTTACCA--AGAGGGATATTGTATATATTTATGTAAAATATTACTAC---AAAGCAATTAAAATGTACTGATTTTACTCACAAATAACTATCAATATGTACACATTATAAATAT---GATACATGG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21166615 497 -  24206276 CTACATGTATTATTTTAACTTCAGAAAGTATTTCATAATATAAAGAAAACAAAATCAAAGTTGGATTTACAACTGTATC-AACTagaattttgaagtatgacaatacctagagtctacaaggaatgtgactg-aaaa-------ctcatgaaatcctagcaggattataaa-ctggtaaaacgcactttgaaaaagta-----cccagcaacttgaagtgtgaagacagtat--accaaactctgcaattaacttctaggtacatact-c-aaggaagctcttgtgatgtgtgtac-aggagacataaacaaggatgttcaccaaaatattgtttataatagcaaaaa-atatatacttaaagatttgcc-taaatacagcaaaaaatatatacctaaccatttacca--agagggatattgtatatatttatgtaaaatattactac---agagcaattaaaatgtactgattttactcacaaataactatcaatatgtacacattataaatat---gatacatgg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       108840 496 -   1397330 CTACATGTATTATTTTAACTTCAGAAAGTATTTTATAATATAAAGAAAACAAAATCAAAGTTGGATTTACAGCTGTATC-AACTGGaattttgaagtatgacaatacctagagtctacaaggaatgtgactg-aaaa-------ctcatgaaatcctagcaggattataaa-ctggt-aaacgcactttgaaaaagta-----cccagcaacttgaagtgtgaagacagtat--accaaactctgcaattaacttctaggtacatact-c-aaggaagctcttgtgatgtgtgcac-aggagacataaacaaggatgttcaccaaaatattgtttataatagcaaaaa-atATATACTTAAAGATTTGCC-TAAATACAGCAAAAAATACATACCTAATCATTTACCA--AGAGGGATATTGTATATATTTATGTAAAATATTACTAC---AAAGCAATTAAAATGTACTGATTTTACTCACAAATAACTATCAATATGTACACATTATAAATAT---GATACATGG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       106310 496 -   1784207 CTACATGTATTATTTTAACTTCAGAAAGTATTTTATAATATAAAGAAAACAAAATCAAAGTTGGAtttatagctatatc-aactagaattttgaagtatgacaatacctagagtctacaaggaatgtgactg-aaaa-------ctcatgaaatcctagcaggattataaa-ctggt-aaatgcactttgaaaaagta-----cccagcaacttgaagtgtgaagacagtat--aacaaactctgcaactaacttctaggtacatact-c-aaggaagctcttgtgatgtgtgcac-aggagacataaacaaggatgttcaccaaaatattgtttataatagcaaaaa-atatatacttaaagatttgcc-taaatacagcaaaaaatacatacctaaccatttacca--agagggatattgcatatatttatgtaaaatattactac---aaagcaattaaaatgtactgattttactcacaaataactatcaatatgtacacattatcaatat---gatacatgg
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22306844 488 + 158406734 CTACATATATTATTTTAACTTCAGAAAGTATTTTACAATATAAAGAAAACAAAATC-AAGTTTGACTTTCAGCTGTATC-AACTGGaattttgaagtatgacaatacctagagtttacaaggaatgtgactg-aaaa-------ctcatgaaatcttagcaggattataaa-ctggt-acattcattttgaaaaagta-----cccagcaacttaaagtgtgaagacagtat--actaaactctgcaattcacttctaggtatatact-c-aaggaaactcttgcaatgtgtgcac-aggagacataaacaaggatgttcaccaaaatactgtttataatagcaaaaaTATACATGCCTAAACATTTACC-TAAATatagcaaaaaatatatacctaaacacttaccagtagagggatgttatatatatttatgtaaaatattactac---aaagcaattaaaatgtactgattttact----------tatcaatatgtacacattataaatat---gatacatgg
i calJac3.chr6              C 0 I 1
s saiBol1.JH378108           50541686 484 +  54856640 CTACATGTATTATTTTAACTTCAGAAAGTATTTTACAATATAAAGAAAACAAAATC-AAGTTTGATTTACAGCTATATC-AACTGGaatttttaagtataacaatacttagagtctacaaggaatgtgactg-aaaa-------ctcatgaaatcctaccaggattataaa-------acattcattttgaaaaagta-----cccagcaacctgaagtatgaagacagtat--accaaactccgcaattcatttccaggtatatact-c-aaggaaactcttgtgatgtgtgcac-aggagacatagagaaggatgttcaccaaaatactgtttataatagcaaaaatatatatgcctaaacatttaccttaaatatagcaaaaaatatatacctaaacact------tagagggataaatgttatattcatgtaaaatattactac---aaagcaattaaaatgtactgattttacttataaa----tatcaatatgtacacattataaatat---gatacatgg
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       686230 496 -   2910086 CTACACGTATTATTTTAACTTCAGAATGTATTTTACAATATAAAGAAAACAAAATC-AAGTTTGAtttatagctatatc-aactggaattttgaagtatgacaatacctagagtctataaggaatgtgactgcaaaa-------ctcatgaaatcctaccaggattataaa-ctggt-acacccattttgaaaaagta-----cccagcaacttgaagtgtgaagacagtat--accaaactctgcaattcacttctaggtatatact-c-aaggaaactcttgtgatgtgtgcac-aggagacataaacaaggatgttcaccaaaatactgtttataatagcaaaaatgtatatgcctaaacatttaccttaaatatagcaaaaaatatatacctaaacacttaccagtagagggataaatgttatatatatgtaaaatattactac---aaagcaattaaaatgtactgattttacttataaa----tatcaatatatacacattataaatat---gatacatgg
i cebCap1.NW_016107610v1    C 0 I 1
s aotNan1.NW_018505940v1     40710472 491 +  42888418 CTACATGTATTATTTTAACTTCAGAAAGTATTTTATAATATAAAGAAAACAAAATC-AAGTTTGAtttacagctatatc-aactggaattttgaagtatgacaatacctagagtctacaaagaatgtgactg-aaaa-------ctcatgaaatcctagcaggattataaa-ccagt-acattcattttgaaaaagta-----ccgagcaac---aagtgtgaagacagtat--agcaaactctgcaattcacttctaggtatatact-c-aaggaaactcttgtgatgtgtgcac-aggagacataaacaaggatgttcaccaaaatactgtttataatagcaaaaatatatatgcctaaacatttacc-taaacatagcaaaaaatatatacctaaacacttaccagcagagggatgttatagatatttatgtaaaatattactac---aaagcaattaaaacgtactgattttacttataaa----tatcaatatgtacacattataaatat---gatacatgg
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             705662 460 -  36342412 CTACATGTACTCTTTTAACCATGGAAAATATTTTATAATACAAAAA----AAAACT-GAACTGGATCTatacccataactgactgaaatgttgaagtataataatatctagtgtctacaagg-ctatgaaga-aaaa-------tacacaaaatccctagaagcctgtaaaactggt-aaattcattttgaaaaagtagtcacgtcaccagcttgaag-gtaaagacagcac--actatactttgcaatttacttctagatacatgttcc-caagaaacttctgttacatgtgtacaaggaaatataaacaatgattttcaccaacatactgtttataacagcaaaaa-a-------------------c-tgga-------------aaatacttaagtatttaccagtaaagggatattgtatatgtttatgtaaaatgttactaa---gaagtaattaaca--tattgattttacccataaa----tatcaatatg--cacattataaatgt---gatacatgg
i otoGar3.GL873530          I 16079 I 1059
s canFam3.chr3               54474872 459 +  91889043 -CTTATGTAGTCTTTGAACTGTAGAAAATATTTCACA--------AAAACAAAATT-AAGTAGGttttacacccaaggctgattggaattttgaattacaataataattggggtctacaaa-aatgtagggg-aaaaaaagactctcatgaaatcctggctggattgcaaa-cagag-aaattcactttgagaaagaa-----gtcagtaacttaa--tttgaagacaatataaaccccattctgcaattcacttctagctacacagg-ctaaagaaattcttgttacgtgcacataaggagacctaaacaaggatgttcaccaaaatactatttataatagcaaaaa-ata-----------atttacc---aatataggatc--------------------------agataattattatagatatttttgtaaaatactactactatacagcaattaaaacacactgatttgacttaaaa-----tattaatatggagacatcataaatataaCAATACATAG
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I

a score=12376.000000
s hg38.chr15_KI270850v1_alt    405188 1 +    430880 a
s panTro5.chr15              63557925 1 +  83230942 a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80514973 1 +  99763055 a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       115082 1 -   1709092 a
i gorGor5.CYUI01015556v1    I 1 C 0
s nomLeu3.chr6               17276322 1 - 121039945 a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60950434 1 + 169600520 a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108476811 1 - 171882078 a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        93960 1 -   2311642 a
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        86039 1 -   1987038 A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21167112 1 -  24206276 a
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       109336 1 -   1397330 A
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       106806 1 -   1784207 a
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22307333 1 + 158406734 a
i calJac3.chr6              I 1 C 0
s saiBol1.JH378108           50542170 1 +  54856640 a
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       686727 1 -   2910086 a
i cebCap1.NW_016107610v1    I 1 C 0
s aotNan1.NW_018505940v1     40710963 1 +  42888418 a
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54475331 1 +  91889043 A
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e otoGar3.GL873530             706122 1059 -  36342412 I

a score=8460.000000
s hg38.chr15_KI270850v1_alt    405189 1 +    430880 g
s panTro5.chr15              63557926 1 +  83230942 a
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80514974 1 +  99763055 a
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       115083 1 -   1709092 a
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17276323 1 - 121039945 a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60950435 1 + 169600520 a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108476812 1 - 171882078 a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        93961 1 -   2311642 a
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        86040 1 -   1987038 A
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21167113 1 -  24206276 a
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       109337 1 -   1397330 A
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       106807 1 -   1784207 a
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22307334 1 + 158406734 a
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50542171 1 +  54856640 a
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       686728 1 -   2910086 a
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40710964 1 +  42888418 a
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             707181 1 -  36342412 G
i otoGar3.GL873530          I 1059 C 0
s canFam3.chr3               54475332 1 +  91889043 g
i canFam3.chr3              C 0 I 4383
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I

a score=3958121.000000
s hg38.chr15_KI270850v1_alt    405190 402 +    430880 aaaagcaaatgccaggaagat-aatgtcatattctttgcataaagatttaaaacatATGACAATCAGGAGGCGGCATGaggggtcttcttagttgcttatatcattctatttcttgatttgagcttgag-agcatgagtgtatttgttttgtgacaatttacccagttatatactttaaactgtgcattttcctcagtgtatgttttatttacataaaa---------atgt--------aaaaCGAtgtttatggacatacacagagaagtataaaaacacggatgggaaggaaatataccaacttcaggagagttatctctaggaaaatgaggaaaagagtacacttaagtgcaaaacttttatttgatgtttatattgtctgaataaaggtctgaatcaaacatatcaaaatcttaac
s panTro5.chr15              63557927 402 +  83230942 aaaagcaaatgccaggaagat-aatgtcatattctttgcataaagatttaaaacatATGACAATCAGGAGGCGGCATGaggggtcttcttagttgcttatatcattctatttcttgatttgagcttgag-agcatgagtgtatttgttttgtgacaatttacccagttatatactttaaactgtgcattttcctcagtgtatgttttatttacataaaa---------atgt--------aaaacgatgtttatggacatacacagagaagtataaaaacacggatgggaaggaaatacaccaacttcaggagagttatctctaggaaaatgaggaaaagagtacacttaagtgcaaaacttttatttgatgtttatattgtctgaataaaggtctgaatcaaacatatcaaaatcttaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80514975 402 +  99763055 aaaagcaaatgccaggaagat-aatgtcatattctttgcataaagatttaaaacatATGAcaatcaggaggcggcatgaggggtcttcttagttgcttatatcattctatttcttgatttgagcttgag-agcatgagtgtatttgttttgtgacaatttacccagttatatactttaaactgtgcattttcctcagtgtatgttttatttacataaaa---------atgt--------aaaacgatgtttatggacatacacagagaagtataaaaacacggatgggaaggaaatacaccaacttcaggagagttatctctaggaaaatgaggaaaagagtacacttaagtgcaaaacttttatttgatgtttatattgtctgaataaaggtctgaatcaaacacatcaaaatcttaac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       115084 390 -   1709092 aaaagcaaatgccaggaagat-aatgtcatattctttgcataaagatttaaaacatATGACAattaggaggcggcatgaggggtcttcttagttgcttatatcattctatttcttgatttgagcttgag-agcatgagtgtatttgttttgtgacaatttacccagttatatactttaaactgtggattttcctcagtgttttttttatttacataaaa---------acgt--------aaaacgatgtttatggacatacacagagaagtataaaaacacggatgggaaggaaatacaccaacttcaggagagttatctctaggaaaatgaggaaaagggtacacttaagtgtaaaacttttatttgatgtttatatt------------gtctgaatcgaacatatcaaaatcttaac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17276324 397 - 121039945 aaaagcaaatgccaggaagataaatgtcatattctttgcataaagatttaaaacatATGACAattaggagggggcatgaggggtattcttagttgcttgtatcattctatttcttgatttgagcttgag-agcatgagtgtatttgttttgtgacaatttacccagtcatatactt-----tgtgcattttcctcagtgtatgttttatttacataaaa---------atgt--------aaaacgatgtttatggacatacacagagaagtataaaaacacagatggaaaggaaatacaccaacttcaggagagttatctctagg-aaatgaggaaaagagtacacttaagtgcaaaatttttatttgatgtttatattgtctgaataaaggtctgaatcaaatatatcaaaatcttaac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60950436 401 + 169600520 aaaagaaaatgccaggaagat-aatgtcatattctttgcataaagatttaaaacatATGACAattaggagggggcatgaggggtcttcttagttgctgatatcattctatttcttgatttgagcttgag-agcatgagtgtatttgttttgtgacaatttacccagttatatacttt-aattgtgcattttcctcagtgtatgttttatttacataaaa---------aagt--------aaaatgatgtttatggacatacacagagaagtataaaaacatggatggtaaggaaatacaccaacttcaggagagttatctctaggaaaatgaggaaatgagTACACTTAAGTGAAAAATTTTTATTTGATTTTTATATTGTCTGAATAAAGGTCTGAATCGAACATATCAAAATCTTAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108476813 401 - 171882078 aaaagaaaatgccaggaagat-aatgtcatattctttgcataaagatttaaaacatATGACAattaggagggggcatgaggggtcttcttagttgctgatatcattctatttcttgatttgagcttgag-agcatgagtgtatttgttttgtgacaatttacccagttatatacttt-aattgtgcattttcctcagtgtatgttttatttacataaaa---------aagt--------aaaatgatgtttatggacatacacagagaagtataaaaacatggatggtaaggaaatacaccaacttcaggagagttatctctaggaaaatgaggaaatgagtacacttaagtgaaaaatttttatttgatttttatattgtctgaataaaggtctgaatcgaacatatcaaaatcttaac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        93962 401 -   2311642 aaaagaaaatgccaggaagat-aatgtcatattctttgcataaagatttaaaacatATGACAattaggagggggcatgaggggtcttcttagttgctgatatcattctatttcttgatttgagcttgag-agcatgagtgtatttgttttgtgacaatttacccagttatatacttt-aattgtgcattttcctcagtgtatgttttatttacataaaa---------aagt--------aaaatgatgtttatggacatacacagagaagtataaaaacatggatggtaaggaaatacaccaacttcaggagagttatctctaggaaaatgaggaaatgagTACACTTAAGTGAAAAATTTTTATTTGATTTTTATATTGTCTGAATAAAGGTCTGAATCGAACATATCAAAATCTTAAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        86041 399 -   1987038 AAAAGAAAATGCCAGGAAGAT-AATGTCATATTCTTTGCATAAAGATTTAAAACATATGACAattaggagggggcatgaggggtcttcttagttgctgatatcattctatttcttgatttgagcttgag-agcatgagtgtatttgttt--tgacaatttacccagttatatacttt-aactgtgcattttcctcagtgtatgttttatttacataaaa---------aagt--------aaaatgatgtttatggacatacacagagaagtataaaaacatggatggtaaggaaatacaccaacttcaggagagttatctctaggaaaatgaggaaatgagTACACTTAAGTGAAAAATTTTTATTTGATTTTTATATTGTCTGAATAAAGGTCTGAATCGAACCTATCAAAATCTTAAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21167114 401 -  24206276 aaaagaaaatgccaggaagat-aatgtcatattctttgcataaagatttaaaacatATGACAattaggagggggcatgaggggtcttcttagttgctgatatcattctatttcttgatttgagcttgag-agcatgagtgtatttgttttgtgacaatttacccagttatatacttt-aattgtgcattttcctcagtgtatgttttatttacataaaa---------aagt--------aaaatgatgtttatggacatacacagagaagtataaaaacatggatggtaaggaaatacaccaacttcaggagagttatctctaggaaaatgaggaaaagagtacacttaagtgaaaaatttttatttgatttttatattgtctgaataaaggtctgaatcgaacatatcaaaatcttaac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       109338 401 -   1397330 AAAAGAAAATGCCAGGAAGAT-AATGTCATATTCTTTGCATAAAGATTTAAAACATATGACAattaggagggggcatgaggggtcttcttagttgctgatatcactctatttcttgatttgagcttgag-agcatgagtgtatttgttttgtgacaatttacccagttatatacttt-aattgtgcattttcctcagtgtatgttttatttacataaaa---------aagt--------aaaatgatgtttatggacatacacagagaagtataaaaacatggatggtaaggaaatacaccaacttcaggagagttatctctaggaaaatgaggaaatgagTACACTTAAGTGAAAAATTTTTATTTGATTTTTATATTGTCTGAATAAAGGTCTGAATCGAACCTATCAGAATCTTAAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       106808 401 -   1784207 aaaagcaaatgccaggaagat-aatgtcatattctttgcataaagatttaaaatatatgacaattaggagggggcatgaggggtcttcttagttgctgatatcattctatttcttgatttgagcttgag-agcatgagtgtatttgttttgtgacaatttacccagttatatacttt-aattgtgcattttcctcagtgtatgttttatttacatagaa---------aagt--------aaaaTGAtgtttatggacatacacagagaagtataaaaacatggatggcaaggaaatacaccaacttcaggagagttatctctaggaaaatgaggaaaagaGTACACTTAAGTGAAAAATTTTTATTTGATTTTTATATTGTCTGAATAAAGGTCTGAATCGAATATATCAAAATCTTAAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22307335 395 + 158406734 aaaagcaaataccaggaagat-aatgtcatactctttgcctaaagatttaaaacaTATGACAATTAAGAGGGG--CTGaggggtcttcctaggtgctggtat---tctatttcttgatttgagctttag-agcatgagtgtatttgttttgtgacaatttatccagttatatacttt-aattgtaca-tttCCTCAGTGGATGTTTTATTTACGTTTTACCTTTTTATAGGT--------AAACTGTTGTTTGTGGACATACACAGAGCAGCAT-AAAAAACAGATGAAAAGGAAATACACCAACTTCAGGAGAGCTATCTCCAGGAAAATGAGGGCAAGAGTATACTTAAGTGTGAAATTTTTATTT--------TACTGTCTGAATAAAGGTCTGAATCGAACGTATCAATATCTTAAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50542172 385 +  54856640 aaaagcaaataccaggaagat-aatgtcatattttttgcctaaagatttaaaacatATGACAactaggagggg-cctgaggagtcttcttaggtgctggtat---tctatttcttgatttgagctttag-agcatgagtgtatttgttttgtgacaatttatccagttatatacttt-atttgtaca-tttcctcagtgcatgttttacttACGTTTTACCTTTTTATAGGT--------AAAATGATGTTTGTGGACACACACAGAGAAGCACAAAAAAACAGACGGAAAGGAAATACACCAACTTCAGGAGAGCTATCTGTAGGAAAATGAGGGCAAGAGTATACTTAAGTGCGACATTTTTATTT--------TACT------------GTCTCAATCGAACATACCAATACCTTAAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       686729 397 -   2910086 aaaagcaaataccagggagat-aatgtcatattctttgcctaaagatttaaaacatATGACAATTAGGAGGGG-CCTGaggggtcttcttaggttctggaat---tctatttcttgatttgagcttttg-agcatgagtgtatttgttttttgacaatttatccagttatatacttt-aattgtaca-tttcctcagtgtatgttttatttACGTTTTACCTTTTTATAGGT--------AAAGTGATGTTTGTGGACATACACAGAGAAGCACAAAAAAACAGATGGAAAGGAAACAGACCAACTTCAAGAGTGCTATCTCTAGGAAAATGAGGGCAAGAGTATACTCAAGTATAAAATTTTTATTT--------TACTGTCTGAATAAAGGTCTGAATCAAGCATATCAATATCTTAAC
i cebCap1.NW_016107610v1    C 0 I 239
s aotNan1.NW_018505940v1     40710965 395 +  42888418 aaaagcaaataccaggaagat-aatgtcatattctttgcctaaagatttaaaacatATGAcaattaggagggg-cctgaggggtcttcttaggtgctggtat---tctatttcttgatttgagctttag-agcatgagtgtatttgttttgtgaccatttatccagttatatacgtt-aattgtaca-tttcctcagtgtatgttttatttACGTTTTACCTTTTT-TAGGT--------CAAATGATGTTTCTGGATATACACAGAGAAGCAT-AAAAAACAGATAGAAAGGAAATACACCAACTTCAGGAGGGCTATCTCTAGGAAAATGAGGGCAAGAGTATACTTAAGTGCAAAATTTTTATTT--------TACTGTCTGAGTAAAGGTCTGAATCGAACATATCAATATCTTAAC
i aotNan1.NW_018505940v1    C 0 I 239
s otoGar3.GL873530             707182 373 -  36342412 AAAAGGAAAAGCAAAAAATAA-AA-----------ATAAATAGATAAATGAAACACACAAcaattaggaagtggcatgggggg--gtctcgggtgctagtaacatgctgtttcttgatttgttctttagttacacgggtggatttgttgtgtgataatttacccagttgcacacttt-aattgcacatatttctgaatgC--------TTTACATAAAA---------AGGTAAAACTTAAAAATGGtgtttatgggtatatacaca-aagtataaaaacatgaatgagaagaaaatacaccaacttcaggaaagtTATA-----------GAGGAAA----CAGACTTAAGTACAAAATTTTTATTTTATGTTTATAGTGTCTGATAGaagatatgaatctaacatttcaaaatcttaac
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=48342.000000
s hg38.chr15_KI270850v1_alt    405592 8 +    430880 atttgtta
s panTro5.chr15              63558329 8 +  83230942 atttgtta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80515377 8 +  99763055 atttgtta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       115474 8 -   1709092 atttgtta
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17276721 8 - 121039945 atttgtta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60950837 8 + 169600520 TTTTGTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108477214 8 - 171882078 ttttgtta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        94363 8 -   2311642 TTTTGTTA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        86440 8 -   1987038 TTTTGTTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21167515 8 -  24206276 ttttgtta
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       109739 8 -   1397330 TTTTGTTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       107209 8 -   1784207 TTTTGTTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22307730 5 + 158406734 ---TGTTA
i calJac3.chr6              C 0 I 234
s saiBol1.JH378108           50542557 4 +  54856640 ---TGTT-
i saiBol1.JH378108          C 0 C 0
s otoGar3.GL873530             707555 8 -  36342412 acttgttg
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1     40711360 239 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       687126 239 -   2910086 I

a score=158030.000000
s hg38.chr15_KI270850v1_alt    405600 25 +    430880 aagatcggtggtaaataca-tTATTT
s panTro5.chr15              63558337 25 +  83230942 aagatcggtggtaaataca-ttattt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80515385 25 +  99763055 aagatcggtggtaaataca-ttattt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       115482 25 -   1709092 aagatcggtgggaaataca-ttattt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17276729 25 - 121039945 aagatcggtggtagataca-ttattt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60950845 25 + 169600520 AAGATCAGTGGTAGATACA-TTATTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108477222 25 - 171882078 aagatcagtggtagataca-ttattt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        94371 25 -   2311642 AAGATCAGTGGTAGATACA-TTATTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        86448 25 -   1987038 AAGATCAGTGGTAGATACA-TTATTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21167523 25 -  24206276 aagatcagtggtagataca-ttattt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       109747 25 -   1397330 AAGATCAGTGGTAGATACA-TTATTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       107217 25 -   1784207 AAGATCAGTAGTGGATACA-TTATTT
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50542561 23 +  54856640 ---ACCCTTTGTAAATACAGTTATCT
i saiBol1.JH378108          C 0 I 212
s otoGar3.GL873530             707563 25 -  36342412 aagatgggtgataggtaca-taggta
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1     40711360 239 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22307735 234 + 158406734 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       687126 239 -   2910086 I

a score=87485.000000
s hg38.chr15_KI270850v1_alt    405625 23 +    430880 TACATTCCTCTTTTTAAAttttt
s panTro5.chr15              63558362 19 +  83230942 tacattcctctttttaAA----t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80515410 19 +  99763055 tacattcctctttttaAA----t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       115507 20 -   1709092 tacattcctctttttaAA---tt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17276754 19 - 121039945 tatgttcctctttttaAA----t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60950870 19 + 169600520 TATGTTCCTCTTTTTAAA----t
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108477247 19 - 171882078 tatgttcctctttttaAA----t
i macFas5.chr7              C 0 I 652
s macNem1.NW_012011945v1        94396 19 -   2311642 TATGTTCCTCTTTTTAAA----t
i macNem1.NW_012011945v1    C 0 I 4
s cerAty1.NW_012002657v1        86473 19 -   1987038 TATGTTCCTCTTTTTAAA----t
i cerAty1.NW_012002657v1    C 0 I 9
s chlSab2.chr29              21167548 19 -  24206276 tatgttcctctttttaAA----t
i chlSab2.chr29             C 0 I 9
s manLeu1.NW_012106908v1       109772 19 -   1397330 TATGTTCCTCTTTTTAAA----t
i manLeu1.NW_012106908v1    C 0 I 9
s colAng1.NW_012117110v1       107242 19 -   1784207 TATGTTCCTCTTTTTAAA----t
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873530             707588  8 -  36342412 tAACTTTC---------------
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1     40711360 239 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22307735 234 + 158406734 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       687126 239 -   2910086 I
e saiBol1.JH378108           50542584 212 +  54856640 I

a score=54078.000000
s hg38.chr15_KI270850v1_alt    405648  9 +    430880 ttttttt---tt
s panTro5.chr15              63558381  9 +  83230942 ttttttt---tt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80515429  9 +  99763055 ttttttt---tt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       115527  9 -   1709092 ttttttt---tt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17276773  9 - 121039945 ttttttt---tt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60950889  9 + 169600520 ttttttt---tt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108477918  9 - 171882078 ttttttt---tt
i macFas5.chr7              I 652 C 0
s macNem1.NW_012011945v1        94419  9 -   2311642 ttttttt---tt
i macNem1.NW_012011945v1    I 4 C 0
s cerAty1.NW_012002657v1        86501  9 -   1987038 ttttttt---tt
i cerAty1.NW_012002657v1    I 9 C 0
s chlSab2.chr29              21167576 12 -  24206276 tttttttttctt
i chlSab2.chr29             I 9 C 0
s manLeu1.NW_012106908v1       109800  9 -   1397330 ttttttt---tt
i manLeu1.NW_012106908v1    I 9 C 0
s colAng1.NW_012117110v1       107261  9 -   1784207 ttttttt---tt
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873530             707596  9 -  36342412 TTCTGTT---TT
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1     40711360 239 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22307735 234 + 158406734 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       687126 239 -   2910086 I
e saiBol1.JH378108           50542584 212 +  54856640 I

a score=105061.000000
s hg38.chr15_KI270850v1_alt    405657 19 +    430880 tttttg-agacggagtttcg
s panTro5.chr15              63558390 19 +  83230942 tttttg-agacggagtttcg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80515438 20 +  99763055 tttttgtagacggagtttcg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       115536 19 -   1709092 tttttg-agacggagtttcg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17276782 19 - 121039945 tttttg-agacggagtttcg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60950898 19 + 169600520 tttttg-agacggagtctcg
i rheMac8.chr7              C 0 I 301
s macFas5.chr7              108477927 19 - 171882078 tttttg-agacggagtttca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        94428 19 -   2311642 tttttg-agacggagtttca
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        86510 19 -   1987038 tttttg-agacggagtttca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21167588 19 -  24206276 tttttg-agatggagtttca
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       109809 19 -   1397330 tttttg-agacggagtttca
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       107270 19 -   1784207 tttttg-agacagagtttca
i colAng1.NW_012117110v1    C 0 C 0
e aotNan1.NW_018505940v1     40711360 239 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22307735 234 + 158406734 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       687126 239 -   2910086 I
e otoGar3.GL873530             707605  0 -  36342412 C
e saiBol1.JH378108           50542584 212 +  54856640 I

a score=202719.000000
s hg38.chr15_KI270850v1_alt    405676 38 +    430880 ttcttgtcatcgcccagactggagtgcagtggcatgat
s panTro5.chr15              63558409 38 +  83230942 ctcttgtcatcgcccaggctggagtgcagtggcatgat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80515458 38 +  99763055 ctcttgtcatcgcccaggctggagtgcagtggcatgat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       115555 38 -   1709092 cttttgtcatcgcccaggatggagtgcagtggcacgat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17276801 38 - 121039945 ctcttgtcatcgcccaggctggagtgcagtgacacgat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60951218 38 + 169600520 ctcttgtcatcacccaggctagagtgcagtggcccgat
i rheMac8.chr7              I 301 C 0
s macFas5.chr7              108477946 38 - 171882078 ctcttgtcatcacccaggctagagtgcagtggcccgat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        94447 38 -   2311642 ctcttgtcatcacccaggctagagtgcagtggcccgat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        86529 38 -   1987038 ctcttgtcatcacccaggctggagtgcagtggcccgat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21167607 38 -  24206276 ctcttgtcgtcacccaggctggagtgcagtggcacgat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       109828 38 -   1397330 ctcttgtcatcacccaggctggagtgcagtggcccgat
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       107289 35 -   1784207 ctcttg---tcacccaggctggagagcagtggcacgat
i colAng1.NW_012117110v1    C 0 C 0
e aotNan1.NW_018505940v1     40711360 239 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22307735 234 + 158406734 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       687126 239 -   2910086 I
e otoGar3.GL873530             707605  0 -  36342412 C
e saiBol1.JH378108           50542584 212 +  54856640 I

a score=1508508.000000
s hg38.chr15_KI270850v1_alt    405714 152 +    430880 ctcagctcactgcagcctccacctcccgggttcaagtgattatcctgcctcagcctcccaagtagctgggattacaggtgcatggcaccacgcctggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtT
s panTro5.chr15              63558447 152 +  83230942 ctcagctcactgcagcctccacctcccgggttcaagtgattatcctgcctcagcctcccaagtagttgggattacaggtgcatggcaccacgcccggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80515496 152 +  99763055 ctcagctcactgcagcctccacctcccgggttcaagtgattatcctgcctcagcctcccaagtagttgggattacaggtgcatggcaccacgcccggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       115593 152 -   1709092 ctcagctcactgcagcctccacctcccgggttcaagtgattatcctgcctcagcctcccaagtagctgggactacaggtgcatggcaccacgcccggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17276839 152 - 121039945 ctcagctcactgtagcctccacctcccgggttcaagtgattatcctgcctcagcctcccaagcagctgggattacaggtgcacggcaccacgcccggctgatttttgtatttttagtagagtcaggttttcaccatgttggccaggctagtT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60951256 152 + 169600520 ctcagctcactgcaacctccaccttccgggttcaagtgattctcctgcgtcagcctcccaagtagctgggattacagatgcacggcaccatgcccggctaatttttgtattttcagtagagacagggtttcaccatgttggccaggctgttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108477984 152 - 171882078 ctcagctcactgcaacctccaccttccgggttcaagtgattctcctgcgtcagcctcccaagtagctgggattacagatgcacggcaccatgcccggctaatttttgtattttcagtagagacagggtttcaccatgttggccaggctgTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        94485 152 -   2311642 ctcagctcactgcaacctccaccttccgggttcaagtgattctcctgcgtcagcctcccaagtagctgggattacagatgcacggcaccatgcccggctaatttttgtattttcagtagagacagggtttcaccatgttggccaggctgttt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        86567 152 -   1987038 ctcagctcactgcaacctccaccttctgggttcaagtgattctcctgcgtcagcctcccaagtagctgggattacagatgcacggcaccatgcccggctaatttttgtattttcagtagagacagggtttcaccatgttggccaggctgttt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21167645 152 -  24206276 ctcagctcactgcaacctccaccttctgggttcaagtgattctcctgcgtcagcctcccaagtagctgggattacagatgcacggcaccatgcccggctaatttttgtattttcagtagagacagggtttcaccatgttggccaggctgTTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       109866 152 -   1397330 ctcagctcactgcaacctccaccttccgggttcaagtgattctcctgcgtcagcctcccaagtagctgggattacagatgcacggcaccatgcccggctaatttttgtattttcagtagagacagggtttcaccatgttggccaggctgttt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       107324 152 -   1784207 ctcagctcactgcaacctccaccttccaggttcaagtgattctcctgcgtcagcctcccaagtagctgggattacaggtgcacggcaccatgcccagctaatttttgtattttcagtagagacagggtttcaccatgttggccatgctggtT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6              136098763 152 - 158406734 ctcagctcactgtaacctctgcctcccaggttcaagtgattgtcctgcctcagcttcccaagtatctgggattacaggtgcccaccaccactcccagctaatttttgtatttttagtagagatgaggtttcaccatgttggccatgctggtT
i calJac3.chr6              n 234 C 0
s saiBol1.JH378108            4313842 152 -  54856640 ctcagctcactgtaacctctgcctcccaggttcaagtgattctcctgcctcagcttcccaagtatctgggattacaggtgcccaccaccactcccagctaatttttgtatttttagtagagacgggatttcaccatgttggctgtgctggtT
i saiBol1.JH378108          n 212 C 0
s cebCap1.NW_016107610v1      2222719 152 +   2910086 ctcagctcactgtaacctctgcctcccaggttcaagtgattcttctgcctcagcttcccaagtatctgggattacaggcacccaccaccactcccagctaatttttgtatttttagtatagacggggtttcaccatgttggccatgctggtT
i cebCap1.NW_016107610v1    n 239 C 0
s aotNan1.NW_018505940v1      2176817 152 -  42888418 ctcagctcacggtaacctctgcctcccaggttcaagtgattctcctgcctcagcttcccaagtatctgggattacaggcgcccaccaccactcccagctaatttttgtatttttagtagagatggggtttcaccatgttggccatgctggtT
i aotNan1.NW_018505940v1    n 239 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e otoGar3.GL873530             707605   0 -  36342412 C

a score=941708.000000
s hg38.chr15_KI270850v1_alt    405866 91 +    430880 AAAATTTTTAAAAGC-AAAAAACCCTATAAAAGCAA-ATATATGCATTTAAATCCTACCATTCAGAGATAACTATGTTTACAAAGGTTaacag
s panTro5.chr15              63558599 91 +  83230942 AAAATTTTTAAAAGC-AAAAAACCCTATAAAAGCAA-ATATATGCATTTAAATCCTACCATTCAGAGATAACTATGTTTACAAAGGTTaacag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80515648 91 +  99763055 AAAATTTTTAAAAGC-AAAAAACCCTATAAAAGCAA-ATATATGCATTTAAATCCTACCATTCAGAGATAACTATGTTTACAAAGGTTaacag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       115745 91 -   1709092 AAAATTTTTAAAAGC-AGAAAACCCTATAAAAGCAA-ATATATGCATTTAAATCCTACCATTCAGAGATAATTATGTTTACAAAGGTTaacag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17276991 91 - 121039945 AAAATTTTTAAAAGC-AAAAAACCCTATAAAAGCGA-ATATATGCATTTAAATCCTACCATTCAGAGATAACTATGTTTACAAAGGTAaacag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60951408 92 + 169600520 caaattTTTAAAAGCAAAAAAACCCTATAAAAGCAA-GTATGTGCATTTAAATCCTACCATTCAGAGATAACTATGTTTGTAAAGGTTAAcag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108478136 92 - 171882078 CAAATTTTTAAAAGCAAAAAAACTCTATAAAAGCAA-GTATGTGCATTTAAATCCTACCATTCAGAGATAACTATGTTTGTAAAGGTTAAcag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        94637 92 -   2311642 caaattTTTAAAAGCAAAAAAACCCTATAAAAGCAA-GTATGTGCATTTAAATCCTACCATTCAGAGATAACTATGTTTGTAAAGGTTAAcag
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        86719 92 -   1987038 caaattTTTAAAAGTAAAAAAACCCTATAAAAGCAA-GTATGTGCATTTAAATCCTACCATTCAGAGATAACTATGTTTGCAAAGGTTAAcag
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21167797 92 -  24206276 AAAATTTTTAAAAGCAAAAAAACCCTATAAAAGCAA-GTATGTGCATTTAAATCCTACCATTCAGAGATAACTAAGTTTGCAAAAGTTaacag
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       110018 92 -   1397330 caaattTTTTAAAGTAAAAAAACCCTATAAAAGCAA-GTATGTGCATTTAAATCCTACCATTCAGAGATAACTATGTTTGCAAAGGTTAAcag
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       107476 92 -   1784207 AAAATTTTTAAAAGCAAAAAAACCCTATAAAAGCAA-ATATGTGCATTTAAATCCTACCATTCTGAGATAACTATGTTTGCAAAGGTCAAcag
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6              136098915 90 - 158406734 AAAATTTTTAAAAGC--AAAAGCCCTATAAAAGCAA-ATATGTGCACTTAATTCCTACCATTTAGAGATAACTATATTTACAAAGGGTAACAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108            4313994 90 -  54856640 AAAATTTTTAAAAGC--AAAAGCCCTATAAAAGCAA-ATATATGCACTTAAATCCTACCATTCAGAGATAACTGTATTTACAAAGGGTAACAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1      2222871 90 +   2910086 AAAAAATTTAAAAGC--AAAAGCCCTATAAAAGCAA-ATATATGCACTTAAATCCTACCATTCAGAGATAACTATATTTACAAAGGGTAACAG
i cebCap1.NW_016107610v1    C 0 n 0
s aotNan1.NW_018505940v1      2176969 90 -  42888418 AAAATTTTTAAAAGC--AAAAGCCCTATAAAAGCAA-ATATATGCACTTAAATCCTACCATTCAGAGATAACTATATTTACAAAGGGTAACAG
i aotNan1.NW_018505940v1    C 0 n 0
s otoGar3.GL873530             707605 86 -  36342412 GAAATATTTAAAAGT--AAAAGCCCTATAAAAACAATATATGTTCACTTAAGTCCTACCATTTAGAGATAATCATGTTTGCAAAAAGT-----
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=14228.000000
s hg38.chr15_KI270850v1_alt    405957 2 +    430880 ct
s panTro5.chr15              63558690 2 +  83230942 ct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80515739 2 +  99763055 ct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       115836 2 -   1709092 ct
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17277082 2 - 121039945 ct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60951500 2 + 169600520 ct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108478228 2 - 171882078 ct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        94729 2 -   2311642 ct
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        86811 2 -   1987038 ct
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21167889 2 -  24206276 ct
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       110110 2 -   1397330 ct
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       107568 2 -   1784207 ct
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108            4314084 2 -  54856640 TT
i saiBol1.JH378108          C 0 n 0
s otoGar3.GL873530             707691 2 -  36342412 TT
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1      2177059 0 -  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6              136099005 0 - 158406734 C
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1      2222961 0 +   2910086 I

a score=397537.000000
s hg38.chr15_KI270850v1_alt    405959 72 +    430880 --ttgagacataactgacatataaactgca----tgtattcaaagtgtagaatttgatatgtttca-acctatgtatac
s panTro5.chr15              63558692 72 +  83230942 --ttgagacataactgacatataaactgca----tgtattcaaagtgtagaatttgttatgtttca-acctatgtatac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80515741 72 +  99763055 --ttgagacataactgacatataaactgca----tgtattcaaagtgtagaatttgttatgtttca-acctatgtatac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       115838 72 -   1709092 --ttgagacataactgacatataaactgca----tgtattcaaagtgcagaatttgatatgtttca-acctatgtatac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17277084 66 - 121039945 --ttgagacataactgacacataaactgca----tgtatttaaagtgtagaatttgatatgtttca-acc------tac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60951502 72 + 169600520 --ttgagacctaactgacatataaactgca----tgtatttaaagtgcagaatttgatatgtttca-acctatgtatac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108478230 70 - 171882078 --ttgagacctaactgacatataaactgca----tgtatttaaagtgcagaatttg--atgtttca-acctatgtatac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        94731 72 -   2311642 --ttgagacctaactgacatataaactgca----tgtatttaaagtgcagaatttgatatgtttca-acctatgtatac
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        86813 72 -   1987038 --ttgagacctaactgacatataaactgca----tgtatttaaagtgcggaatttgatatgtttca-acctatgtatac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21167891 68 -  24206276 --ttgagac----ctgacatataaactgca----tgtatttaaagtgcagaatttgatatgtttca-acctatgtatac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       110112 72 -   1397330 --ttgagacctaactgacatataaactgca----tgtatttaaagtgcagaatttgatatgtttca-acctatgtatac
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       107570 70 -   1784207 --ttgagacataactgacatataaactgca----tgtatttaaagtgcagaatttg--atgtttca-acctatgtatac
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6              136099005 71 - 158406734 --TTAAGAT---ATTGATACGTTCGATTCAGACCTTTATTCAGACAGTAAAAT---AAAAATTTCACACTTAAGTATAC
i calJac3.chr6              C 0 n 0
s otoGar3.GL873530             707693 55 -  36342412 TTTAGAGGC-----------ATAAAGTGTA----CAta-----agtgcacaattc--tatgtttc--acttacataaat
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1      2177059  0 -  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1      2222961  0 +   2910086 I
e saiBol1.JH378108            4314086  0 -  54856640 I

a score=3865012.000000
s hg38.chr15_KI270850v1_alt    406031 626 +    430880 atacccacgaaaccatcaccaaaagtcaaggtaataaacatatccatcttccccaaaagtttATTTATTTCATTATTTGACCACTTATCGTCAAGTTCTGccccaaaagtttaatacccttttgaaatcctttccta--cctacctctgagtcctcttgcccaggcaaccaccgatctccctgctgtcactggaggttagttggcatttgatagaattctgtgccaacagaattatgtggtatatactc-ttttgtctggcttctttcactgaacataattatcctgaaattcatccatgttgtagta-gcaacaatagtttattcctctttactgctgagcagtactcctttgc--------------atttgtttatccattcatctattgatggacatctgggttgtttccaggttttggctattatatataaagaggctatgaacatttgtgt-taagtttgtatacgg-taaatggtttcatttctcttgagtGtgaccaacactactcaaaactgtcaacataatcgaaaataagggaagtctgagaaactgccacagtctggaggagccc------acatgatgaa------taatgtgatatcctgggtgggatcctggtacagaaaaagcacattaggtaaaaactaag
s panTro5.chr15              63558764 627 +  83230942 atacccacgaaaccatcaccaaaagtcaaggtaataaacatatccatcttccccaaaagtttatttatttcattatttgaccatttatcctcAAGTTCTGccccaaaagtttaatgccctttttaaatcctttccta--cctacctctgagtcctcttgcccaggcaaccaccgatctccctgctgtcactggaggttagttggcatttgatagaattctgtgccaacagaattatgtggtatatactc-ttttgtctggcttgtttcactgaacataattatcctgaaattcatccatgttgtagta-gcaacaatagtttattcctctttactgctgagcagtattcctttgc--------------atttgtttatccattcatctattggtggacatctgggttgtttccaggttttggctattatatataaagaggctatgaacatttgtgt-taagtttgtatacggataaatggtttcatttctcttgagtGtgaccaatactactcaaaactgtcaacataatcgaaaataagggaagtctgagaaactgccacagtctggaggagccc------acatgatgac------taatgtgatatcctgggtggtatcctggtacagaaaaagcacattaggtaaaaactaag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80515813 627 +  99763055 atacccacgaaaccatcaccaaaagtcaaggtaataaacatatccatcttccccaaaagtttatttatttcattatttgaccatttatcctcAAGTTCTGccccaaaagtttaatgccctttttaaatcctttccta--cctacctctgagtcctcttgcccaggcaaccaccgatctccccgctgtcactggaggttagttggcatttgatagaattctgtgccaacagaattatgtggtatatactc-ttttgtctggcttgtttcactgaacataattatcctgaaattcatccatgttgtagta-gcaacaatagtttattcctctttactgctgagcagtattcctttgc--------------atttgtttatccattcatctattgatggacatctgggttgtttccaggttttggctattatatataaagaggctatgaacatttgtgt-taagtttgtatacggataaatggtttcatttctcttgagtGtgaccaatactactcaaaactgtcaacataatcgaaaataagggaagtctgagaaactgccacagtctggaggagccc------acatgatgac------taatgtgatatcctgggtggtatcctggtacagaaaaagcacattaggtaaaaactaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       115910 623 -   1709092 atacccaagaaaccatcaccaaaagtcaaggtaataaacatatccatcttccccaaaag----tttATTTCATTATTTGACCACTTATCCTCAAGTTCTGccccaaaagtttaacgcccttttgaaatcctttccta--cctacctctgagtcctcttgcccaggcaaccaccgacctccctgctgtcactggaggttagttggcatttgatagaattctgtgcaaacagaattatgtggtatatactc-ttttgtctggcttctttcgctgaacataattatcctgaaattcatccatgttgtagta-gcatcaatagtttattcctctttactgctgagcagtactcctttgc--------------gtttgtttatccattcatctattgatggacatctgggttgtttccaggttttggctattatatataaagaggctatgaacatttgtgt-taagtttgtatatggataaatggtttcatttctcttgagtGtgaccaatactactcaaaactgtcaaaataatcgaaaataagggaagtctgagaaactgccacagtctggaggagccc------acatgatgac------taatgtgatatcctgggtgggatcctggtacagaaaaagcacattaggtaaaaactaag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17277150 623 - 121039945 atacccacgaaaccatcaccaaaagtcaaggtaataaacatatccatcttccccaaaagtttatttatttcattatttgaccacttatcctcaaattctgccccaaaagtttaatgcccttttc--atcctttccta--cctacctctgagtcctcttgcccaggcaaccagtgatctctctgctgtaactagaggttagctggcatttgatagaattcggtgcaaacagaattatgtagtatatactc-ttttgtctggcttctttcgctgaacataattatcctgaaattcatccatgttgtagta-gcatcaatagtttattcctctttactgctgagcagtactcctttgc--------------atttgtttatccattcatctattgatggacatctgggttgtttccaggttttggctattatatataaagaggctatgaacatttgtgt-taagtttgtatatagataaatggtttcatttctcttgagtgtgaccaatactactcaaaactgtcaacataatcgaaaataaggaaaatctgagaaactgccacagtctggaggagccc------acatgaggac------taatgtgatatcctgggtgggatcctggtacagaaaaag--cattaggtaaaaactaag
i nomLeu3.chr6              C 0 I 447
s rheMac8.chr7               60951574 620 + 169600520 atacccacgaaaccattaccaaaagtcaagataatgaacgtatccatctt-cccaaaag----cttatttcattatttgacctcttatcctcaagttctgccccaaaagtttaatgcccttttgaaatccttttcta--cccacctctgagtcctcttgcccaggcaaccaccgatctccctgctgtcactagaggttagttggcatttgatagaattctgagcaaacagaattatgtag--tatactc-ttttgtctggcttctttcgctgagcataactatcctgaaatttatccatgctgtagta-gcatcaatagtttattcctctttactgctgagcagtactcctttgc--------------atttgtttatccattcatctactgatggccatctgggttgtttccaggttttggctattatatataaagaggctataaacatttgtgt-taagtttgtatatggataaatggtgtcacttctcttgagtGtgaccaatactactcaaaaccgtcaacataatcgaaaataaggaaagtctgagaaactgccacagtctggaggagcct------acatgatgac------taatgtgatattctgggtgggatcctggtacagaaaaagcacattaggtaaaaactaag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108478300 620 - 171882078 atacccacgaaaccattaccaaaagtcaagataatgaacgtatccatctt-cccaaaag----cttatttcattatttgacctcttatcctcaagttctgccccaaaagtttaatgcccttttgaaatccttttcta--cccacctctgagtcctcttgcccaggcaaccaccgatctccctgctgtcactagaggttagttggcatttgatagaattctgagcaaacagaattatgtag--tatactc-ttttgtctggcttctttcgctgagcataactatcctgaaattcatccatgctgtagta-gcatcaatagtttattcctctttactgctgagcagtactcctttgc--------------atttgtttatccattcatctactgatggccatctgggttgtttccaggttttggctattatatataaagaggctataaacatttgtgt-taagtttgtatatggataaatggtgtcacttctcttgagtGtgaccaatactactcaaaaccgtcaacataatcgaaaataaggaaagtctgagaaactgccacagtctggaggagcct------acatgatgac------taatgtgatattctgggtgggatcctggtacagaaaaagcacattaggtaaaaactaag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        94803 620 -   2311642 atacccacgaaaccattaccaaaagtcaagataatgaacgtatccatctt-cccaaaag----cttatttcattatttgacctcttatcctcaagttctgccccaaaagtttaatgcccttttgaaatccttttcta--cccacctctgagtcctcttgcccaggcaaccaccgatctccctgctgtcactagaggttagttggcatctgatagaattctgagcaaacagaattatgtag--tatactc-ttttgtctggcttctttcgctgagcataactatcctgaaattcatccatgctgtagta-gcatcaatagtttattcctctttactgctgagcagtactcctttgc--------------atttgtttatccattcatctactgatggccatctgggttgtttccaggttttggctattatatataaagaggctataaacatttgtgt-taagtttgtatatggataaatggtgtcacttctcttgagtGtgaccaatactactcaaaaccgtcaacataatcgaaaataaggaaagtctgagaaactgccacagtctggaggagcct------acatgatgac------taatgtgatattctgggtgggatcctggtacagaaaaagcacattaggtaaaaactaag
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        86885 619 -   1987038 atacccacgaaaccattaccaaaagtcaagataatgaacatatccatctt-cccaaaag----cttatttcattatttgacctcttatcctcaagttctgccccaaaagtttaatgcccttttgaaatccttttcta--cctacctctgagtcctcttgcccaggcaaccaccgatctccctgctgtcactagaggttagttggcatttgatagaattctgagcaaacggaattatgtag--tatactc-ttttgtctggcttctttcgctgagcataattatcctgaaattcattcatgctgtagta-gcatcaatagtttattcctctttactgctgagcagtacacctttgc--------------atttgtttatccattcatctactgatggccatctgggttgtttccaggttttggct-ttatatataaagaggctataaacatttgtgt-taagtttgtatatggataaatggtgtcacttctcttgagtGtgaccaatactactcaaaaccgtcaacataatcgaaaataaggaaagtctgagaaactgccacagtctggaggagcct------acatgatgac------taatgtgatattctgggtgggatcctggtacagaaaaagcacattaggtaaaaactaag
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21167959 620 -  24206276 atacccatgaaaccattaccaaaaatcaagataataaacatatccatctt-cccaaaag----cttatttcattatttgacctcttatcctcaagttctgccccaaaagtttaatgcccttttgaaatccttttcta--cctacctctgagtcctcttgcccaggcaaccaccgatctccctgctgtcactagaggttagttggcatttgatagaaatctgagcaaacggaattatgtag--tatagtc-ttttgtctagcttctttcgctgagcataattatcctgaaattcatccatgctgtagta-gcatcaatagtttattcctctttactgctgagcagtactcctttgc--------------atttgtttatccattcatctattgatggacatctgggttgtttccaggttttggctattatatataaagaagctataaacatttgtgt-taagtttgtatatggataaatggtgtcacttctcttgagtGtgaccaatactactcaaaaccgtcaacataatcgaaaataaggaaagtctgagaaactgccacagtctggaggagcct------acatgatgac------taatgtgatattctggatgggatcctggtacagaaaaagcacattaggtaaaaactaag
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       110184 619 -   1397330 atacccacgaaaccattaccaaaagtcaagataatgaacatatccatctt-cccaaaag----cttatttcattatttgacctcttatcctcaagttctgccccaaaagtttaatgcccttttgaaatccttttcta--cctacctctgagtcctcttgcccaggcaaccaccgatctccctgctgtcactagaggttagttggcatttgatagaattccgagcaaacggaattatgtag--tatactc-ttttgtctggcttctttcgctgagcataattatcctgaaattcatccatgctgtagta-gcatcaatagtttattcctctttactgctgagcagtacacctttgc--------------atttgtttatccattcatctactgatggccatctgggttgtttccaggttttggct-ttatatataaagaggctataaacatttgtgt-taagtttgtatatggataaatggtgtcacttctcttgagtGtgaccaatactactcaaaaccgtcaacataatcgaaaataaggaaagtctgagaaactgccacagtctggaggagcct------acatgatgac------taatgtgatattctgggtgggatcctggtacagaaaaagcacattaggtaaaaactaag
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       107640 616 -   1784207 atacccacgaaaccatcaccaaaagtcaagataataaacatatccatctt-cccaaaag----cttatttcattatttgacctcttatcctcaagttctgctccaaaagtttaatgcccttttgaaatccttttcta--cctacctctgagtcctcttgcccaggcaaccaccgatctccctgctgtcactagaggttagttggcatttgatagaattctgtgtaaacggaattatgtag--tatactc-ttttgtctggcttctttcactgagcataactatcctgaaatttatccatgctgtagta-gcatcaatagtttattcctctttactgctgagcagtactcctttgc--------------atttgtttatccattcatctattgatggacatctgggttgtttccaggttttggctattatatataaagaggctatgaatatttgtgt-taagtttgtatgtggataaatggtgtcacttctc--AAGTGtgaccaatactactcaaaactgccaacataatcaaaaataaggaaactctgagaaactgc--cagtctggaggagcct------acatgatgac------taatgtgatattctgggtgggatcctggtacaggaaaagcacattaggtaaaaactaag
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873530             707748 600 -  36342412 acatccatgaaaccaccaccacaa-tcaaggtaatgaacatattcaccatccccaaaag----ttt-------------------------------------------cttgatgcccctctcgaattctttctcacccccatctctgagccctttcccccaggcaacca--ggtttgcttttggccaccaaaggctaactggcattttctagaattctgtgcaagtgtaattatacc---tatgcacacttagtctgtctcctttcactgagcctacttatcctgaaattcatccaagctgtagcatgcactattagtttat---tctttatttctgagtagtattccattctatagatatgccataatttgtttatacattcatctgttgatagacattagagttgtttccagttttcagctattataaataaagaggctatgaacatttgtgtataagtttgtatactgataaatgtttctgtttct--tgagtataaccagttctattcaaaactgtccatgtgatcaagaacaagggaagtctgagaaatagtggttgtctagagaagcctaggataacatgaggactaaatgtaatgtgataccctgcataggatcttgctacagaaaaaggacattaggtaacaaccaag
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1      2177059   0 -  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6              136099076   0 - 158406734 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1      2222961   0 +   2910086 I
e saiBol1.JH378108            4314086   0 -  54856640 I

a score=853246.000000
s hg38.chr15_KI270850v1_alt    406657 164 +    430880 aaaatccaaataaaatacagactacagtatcaatattgcttcactaggtgtgacaaatgcacaataataatgtaagttgttagcaaaatagggg-aaattaggtacaggatatacaggaattctctatgctagctttgtaacttttctattaatTGTTATTAATT
s panTro5.chr15              63559391 164 +  83230942 aaaatccaaataaaatacagactacagtatcaatattgcttcattaggtgtgacaaatgcacaataataatgtaagatgttagcaaaatagggg-aaattaggtacaggatatacaggaattctctatgctagctttgtaacttttctattaatTGTTATTAATT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80516440 164 +  99763055 aaaatccaaataaaatacagactacagtatcaatattgcttcattaggtgtgacaaatgcacaataataatgtaagatgttagcaaaatagggg-aaattaggtacaggatacacaggaattctctatgctagctttgtaacttttctattaatTGTTATTAATT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       116533 164 -   1709092 aaaatccaaataaaatacagactacagtatcaatattgcttcattaggtgtgacaaatgcacaataataatgtaagatgttagcaaaatagggg-aaattaggtacaggatatacaggaattctctatgctagctttgtaacttttctattaatTGTTATTAATT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60952194 165 + 169600520 aaaatccaaataaaatacagactacagtatcaatattgcttcattaggtgtgacaaatgcacaatactaacgtaagacgttagcaaaatagggggaaactaattacaggatatacaggaattctctgtgctatctttgtaacttttctattaattgttattaatt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108478920 165 - 171882078 aaaatccaaataaaatacagactacaatatcaatattgcttcattaggtgtgacaaatgcacaatactaacgtaagatgttagcaaaatagggggaaactaattacaggatatacaggaattctctgtgctatctttgtaacttttctattaattgttattaatt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        95423 165 -   2311642 aaaatccaaataaaatacagactacagtatcaatattgcttcattaggtgtgacaaatgcacaatactaacgtaagacgttagcaaaatagggggaaactaattacaggatacacaggaattctctgtgctatctttgtaacttttctattaattgttattaatt
i macNem1.NW_012011945v1    C 0 I 20
s cerAty1.NW_012002657v1        87504 165 -   1987038 aaaatccaaataaaatacagactacagtatcaatattgcttcattaggtgtgacaaatgcacaatactaacgtaagacgttagcaaaataggggaaaactaattacaggatatacaggaattctctgtgctatctttgtaacttttctattaatTGTTATTAATT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21168579 165 -  24206276 aaaatccaaataaaatacagactacagtatcaatattgcttcattaggtgtgacaaatgcacaatactaacgtaagacgttagcaaaataggggaaaactaattacaggatatacaggaattctctgtgctatctttgtaacttttctattaattgttattaatt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       110803 165 -   1397330 aaaatccaaataaaatacagactacagtatcaatattgcttcattaggtgtgacaaatgcacaatactaacgtaagacgttagcaaaataggggaaaactaattacaggatatacaggaattctctgtgctatctttgtaacttttctattaatTGTTATTAATT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       108256 165 -   1784207 aaaatccaaataaaatacagactacagtatcaatattgcttcattaggtgtgacaaatgcacaatactaacgtaagacgttagcaaaataggggaaaactaattacaggatatacaggaattctctgtgctatctttgtaactcttctattaatTGTTATTAATT
i colAng1.NW_012117110v1    C 0 I 20
s otoGar3.GL873530             708348 138 -  36342412 aaaatccaaacaaaatatggacta-agtatcaatattggttcattagatgtaacaaatacactatactaatataagatggcagc--aataagga-aaacta--tgcagcat-------cattct--------------taactttgctattaattgaaaactatt
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1      2177059   0 -  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6              136099076   0 - 158406734 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1      2222961   0 +   2910086 I
e nomLeu3.chr6               17277773 447 - 121039945 I
e saiBol1.JH378108            4314086   0 -  54856640 I

a score=6656.000000
s hg38.chr15_KI270850v1_alt    406821 4 +    430880 CTAT
s panTro5.chr15              63559555 4 +  83230942 CTAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80516604 4 +  99763055 CTAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       116697 4 -   1709092 CTAT
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60952359 4 + 169600520 atat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108479085 4 - 171882078 atat
i macFas5.chr7              C 0 C 0
s cerAty1.NW_012002657v1        87669 4 -   1987038 ATAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21168744 4 -  24206276 atat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       110968 4 -   1397330 ATAT
i manLeu1.NW_012106908v1    C 0 C 0
s otoGar3.GL873530             708486 3 -  36342412 cta-
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1      2177059 0 -  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6              136099076 0 - 158406734 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1      2222961 0 +   2910086 I
e colAng1.NW_012117110v1       108421 20 -   1784207 I
e macNem1.NW_012011945v1        95588 20 -   2311642 I
e nomLeu3.chr6               17277773 447 - 121039945 I
e saiBol1.JH378108            4314086 0 -  54856640 I

a score=5225.000000
s hg38.chr15_KI270850v1_alt    406825 7 +    430880 TAAAGtt
s rheMac8.chr7               60952363 7 + 169600520 taaagtT
i rheMac8.chr7              C 0 I 14
s cerAty1.NW_012002657v1        87673 7 -   1987038 TAAAGTT
i cerAty1.NW_012002657v1    C 0 I 14
s chlSab2.chr29              21168748 7 -  24206276 taaagtt
i chlSab2.chr29             C 0 I 14
s manLeu1.NW_012106908v1       110972 7 -   1397330 TAAAGTT
i manLeu1.NW_012106908v1    C 0 I 14
s otoGar3.GL873530             708489 3 -  36342412 -aaa---
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1      2177059 0 -  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6              136099076 0 - 158406734 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1      2222961 0 +   2910086 I
e panPan2.chr15              80516608 0 +  99763055 C
e colAng1.NW_012117110v1       108421 20 -   1784207 I
e macNem1.NW_012011945v1        95588 20 -   2311642 I
e macFas5.chr7              108479089 0 - 171882078 C
e nomLeu3.chr6               17277773 447 - 121039945 I
e saiBol1.JH378108            4314086 0 -  54856640 I
e gorGor5.CYUI01015556v1       116701 0 -   1709092 C
e panTro5.chr15              63559559 0 +  83230942 C

a score=6600.000000
s hg38.chr15_KI270850v1_alt    406832 285 +    430880 tttttttttttttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgggatctcggctcactgcaagctccgcctctcgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccactacgcccggctaattttttg----------tatt----tttagtagagacggggtttcaccgttttagccgggatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacagg
s otoGar3.GL873530             708492 258 -  36342412 -------tgttatttttttttttttgagacagcatatcacccgctag-------tagagtgccatggtg---tcacagctcccagcaacctcacactcttgggcttaagagattctcttgcctcagcctcccaagtagctgggactataggtgtctaccacaacacccagctatttttttgctgcagttgtcattgttgtttagcaggcccagg-----ccaggttcaaacccaatagcctcagtgtatgtggctggtgctctaaccactgagg-------------------tacagg
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1      2177059   0 -  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6              136099076   0 - 158406734 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1      2222961   0 +   2910086 I
e panPan2.chr15              80516608   0 +  99763055 C
e colAng1.NW_012117110v1       108421  20 -   1784207 I
e manLeu1.NW_012106908v1       110979  14 -   1397330 I
e chlSab2.chr29              21168755  14 -  24206276 I
e cerAty1.NW_012002657v1        87680  14 -   1987038 I
e macNem1.NW_012011945v1        95588  20 -   2311642 I
e macFas5.chr7              108479089   0 - 171882078 C
e rheMac8.chr7               60952370  14 + 169600520 I
e nomLeu3.chr6               17277773 447 - 121039945 I
e saiBol1.JH378108            4314086   0 -  54856640 I
e gorGor5.CYUI01015556v1       116701   0 -   1709092 C
e panTro5.chr15              63559559   0 +  83230942 C

a score=3780.000000
s hg38.chr15_KI270850v1_alt    407117 4 +    430880 TAAA
s panTro5.chr15              63559559 4 +  83230942 TAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80516608 4 +  99763055 TAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       116701 4 -   1709092 TAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s macFas5.chr7              108479089 4 - 171882078 taaa
i macFas5.chr7              C 0 C 0
s otoGar3.GL873530             708750 4 -  36342412 caat
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1      2177059 0 -  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6              136099076 0 - 158406734 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1      2222961 0 +   2910086 I
e colAng1.NW_012117110v1       108421 20 -   1784207 I
e manLeu1.NW_012106908v1       110979 14 -   1397330 I
e chlSab2.chr29              21168755 14 -  24206276 I
e cerAty1.NW_012002657v1        87680 14 -   1987038 I
e macNem1.NW_012011945v1        95588 20 -   2311642 I
e rheMac8.chr7               60952370 14 + 169600520 I
e nomLeu3.chr6               17277773 447 - 121039945 I
e saiBol1.JH378108            4314086 0 -  54856640 I

a score=12426.000000
s hg38.chr15_KI270850v1_alt    407121 14 +    430880 GTTTTTAATTTTAT
s panTro5.chr15              63559563 14 +  83230942 GTTTTTAATTTTAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80516612 14 +  99763055 GTTTTTAATTTTAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       116705 14 -   1709092 GTTTTTAATTTTAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17278220 14 - 121039945 GTTATTAATTCTAT
i nomLeu3.chr6              I 447 C 0
s macFas5.chr7              108479093 14 - 171882078 gttattaattctat
i macFas5.chr7              C 0 I 3
s otoGar3.GL873530             708754  1 -  36342412 g-------------
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1      2177059  0 -  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6              136099076  0 - 158406734 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1      2222961  0 +   2910086 I
e colAng1.NW_012117110v1       108421 20 -   1784207 I
e manLeu1.NW_012106908v1       110979 14 -   1397330 I
e chlSab2.chr29              21168755 14 -  24206276 I
e cerAty1.NW_012002657v1        87680 14 -   1987038 I
e macNem1.NW_012011945v1        95588 20 -   2311642 I
e rheMac8.chr7               60952370 14 + 169600520 I
e saiBol1.JH378108            4314086  0 -  54856640 I

a score=628060.000000
s hg38.chr15_KI270850v1_alt    407135 121 +    430880 TAAC-TTTTGTAACTTCTTTGTAACTTTTCTATTAATTGAAAGCTATTCTAAAATGTAAGCTTATT-----AAAAAAAAA--------aagagtggaaccactgggtcttatggtaggtaaacatttaacctttt
s panTro5.chr15              63559577 121 +  83230942 TAAC-TTTTGTAACTTCTTTGTAACTTTTCTATTAATTGAAAGCTATTCTAAAATGTAAGCTTATT-----AAAAAAAAA--------aagagtggaaccactgggtcttatggtaggtaaacatttaacctttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80516626 121 +  99763055 TAAC-TTTTGTAACTTCTTTGTAACTTTTCTATTAATTGAAAGCTATTCTAAAATGTAAGCTTATT-----AAAAAAAAA--------aagagtggaaccactgggtcttatggtaggtaaacatttaacctttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       116719 120 -   1709092 TAAC-TTTTGTAACTTCTTTGTAACTTTTCTATTAATTGAAAGCTATTCTAAAATGTTAGCTTATT------AAAAAAAA--------aagagtggaaccactgcgtcttatggtaggtaaacatttaacctttt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17278234 123 - 121039945 TAATAACTTGTAACTTCTTTGTAACTTTTCTATTAATTGAAAGCTATACTAAAATGTAAGCTTATT----TAAAAAAAAA--------aagagtggaaccactgggtcttacagtaggtaaacatttaacctttt
i nomLeu3.chr6              C 0 I 482
s rheMac8.chr7               60952384 133 + 169600520 TAAC-TTGTGTAACTTCTCTGTAACTTTTCTATTAATTGAAAGCTATGCTAAAATGTAAGCTTATTAAAAAAAAAAAAAAGAAactt-aagagtggaaccactgggtcttatgatagataaacacttaacctttt
i rheMac8.chr7              I 14 C 0
s macFas5.chr7              108479110 134 - 171882078 taaC-TTGTGTAACTTCTCTGTAACTTTTCTATTAATTGAAAGCTATGCTAAAATGTAAGCTTATTAAAAAAAAAAAAAAGAAACTTAaagagtggaaccactgggtcttatgatagataaacacttaacctttt
i macFas5.chr7              I 3 C 0
s macNem1.NW_012011945v1        95608 131 -   2311642 taaC-TTGTGTAACTTCTC--TAACTTTTCTATTAATTGAAAGCTATGCTAAAATGTAAGCTTATTAAAAAAAAAAAAAAGAAactt-aagagtggaaccactgggtcttatgatagataaacacttaacctttt
i macNem1.NW_012011945v1    I 20 C 0
s cerAty1.NW_012002657v1        87694 130 -   1987038 TAAC-TTGTGTAACTTCTCTGTAACTTTTCTATTAATTGGAAGCTATGCTAAAATGTAAGCTTATT---TAAAAAAAAAAGAAactt-aagagtggaaccactgggtcttatgataggtaaacacttaacctttt
i cerAty1.NW_012002657v1    I 14 C 0
s chlSab2.chr29              21168769 129 -  24206276 taaC-TTGTGTAACTTCTCTGTAACTTTTCTATTAATTGAAAGCTATGCTAAAATGTAAGCTTATT---AAAAAAAAAaa-aaactt-aagagtgaaaccactgggtcttatgataggtaaacacttaacctttt
i chlSab2.chr29             I 14 C 0
s manLeu1.NW_012106908v1       110993 130 -   1397330 TAAC-TTGTGTAACTTCTCTGTAACTTTTCTATTAATTGGAAGCTATGCTAAAATGTAAGCTTATT---AAAAAAAAAAAGAAactt-aagagtggaaccactgggtcttatgataggtaaacacttaacctttt
i manLeu1.NW_012106908v1    I 14 C 0
s colAng1.NW_012117110v1       108441 124 -   1784207 TAAC-TTGTGTAACTTCTC--TAACTTTTCTATTAATTGAAAGCTATTCTAAAATGTAAGCTTATT-------AAAAAAaaaaactt-aagagtggaaccactggatcttatgataggtaaacatttaacctttt
i colAng1.NW_012117110v1    I 20 C 0
s otoGar3.GL873530             708755  69 -  36342412 -----------------------------------------agcc------aaatgtaagtttatt----tttgaaaaca----cct-aagagtggaattgttgggtcata-------taactgtttaactt---
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1      2177059   0 -  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6              136099076   0 - 158406734 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1      2222961   0 +   2910086 I
e saiBol1.JH378108            4314086   0 -  54856640 I

a score=330536.000000
s hg38.chr15_KI270850v1_alt    407256 55 +    430880 aggaacctgccaaactgttttccaaatagttgtaccattttgcattcctaccagc
s panTro5.chr15              63559698 55 +  83230942 aggaacctgccaaactgttttccaaatagttgtaccattttgcattcctaccagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80516747 55 +  99763055 aggaacctgccaaactgttttccaaatagttgtaccattttgcattcctaccagc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       116839 55 -   1709092 aggaacctgccaaactgttttccaaatagttgtaccattttgcattcctgccagc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17278839 55 - 121039945 aggaacctgccaaactgttttccaaatagttgtaccattttgcattcctaccagc
i nomLeu3.chr6              I 482 C 0
s rheMac8.chr7               60952517 52 + 169600520 aggaacctgcc-aactgttttccaaaaagttgtaccattttgcattcct--cagc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108479244 53 - 171882078 aggaatctgccaaactgttttctaaaaagttgtaccattttgcattcct--cagc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        95739 53 -   2311642 aggaacctgccaaactgttttccaaaaagttgtaccattttgcattcct--cagc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        87824 53 -   1987038 aggaacctgccaaactgttttccaaaaagttgtaccattttgcattcct--cagc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21168898 53 -  24206276 aggaacctgccaaattgttttccaaaaagttgtaccattttgcattcct--cagc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       111123 53 -   1397330 aggaacctgccaaactgttttccaaaaagttgtaccattttgcattcct--cagc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       108565 53 -   1784207 aggaacctgccaaactgctttccaaaaagttgtaccattttgcattcct--cagc
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873530             708824 55 -  36342412 aagaacgagccacagtattttccaggtaattgtgcaattttgcattcctatcagc
i otoGar3.GL873530          C 0 C 0
e aotNan1.NW_018505940v1      2177059  0 -  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6              136099076  0 - 158406734 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1      2222961  0 +   2910086 I
e saiBol1.JH378108            4314086  0 -  54856640 I

a score=3525030.000000
s hg38.chr15_KI270850v1_alt    407311 364 +    430880 agtttgacagtttcagt---------tattcaacatccctgccaattcttggtaaggtcagtcttctcaattttagacattctaagaggCAAAAACAC-----TTTTTGTGTATATTTTGTCA--ACATATATATTGAAAACACACATAAATACAC----ATATGTATATTCTCTCTCATATACACTTTGACAAATGCACAATACGTATGTATGTATATATGAGACAGAA------TATGTATATTCTTCAAACAAGATCAGCAAAATCAGACTTCCTGGTTCCTATAGCAAACTGGCAGTTGCCTAGATCCAAATCTCTCCATATATCCTCTAAAA--CTCACAGATGAACAAAAGCAATAA----AACTCACATCTCAAAACTATAGACTATTT
s panTro5.chr15              63559753 364 +  83230942 agtttgacagtttcagt---------tattcaacatccctgctaattcttggtaagatcagtcttctcaattttagacattctaagaggCAAAAACAC-----TTTTTGTGTATATTTTGTCA--ATATATACATTGAAAACACACATATATACAC----ATATGTATATTCTCTCTCATATACACTTTGACAAATGCACAATACGTATGTATGTATATATGAGACAGAA------TATGTATATTCTTCAAACAAGATCAGCAAAATCAGACTTCCTGGTTCCTATAGCAAACTGGCAGTTGCCTAGATCCAAATCTCTCCATATATCCTCTAAAA--CTCACAGATGAACAAAAGCAATAA----AACTCACATCTCAAAACTATAGACTATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80516802 364 +  99763055 agtttgacagtttcagt---------tattcaacatccctgccaattcttggtaagatcagtcttctcaattttagacattctaagaggCAAAAACAC-----TTTTTGTGTATATTTTGTCA--ATATATACATTGAAAACACACATATATACAC----ATATGTATATTCTCTCTCATATACACTTTGACAAATGCACAATACGTATGTATGTATATATGGGACAGAA------TATGTATATTCTTCAAACAAGATCAGCAAAATCAGACTTCCTGGTTCCTATAGCAAACTGGCAGTTGCCTAGATCCAAATCTCTCCATATATCCTCTAAAA--CTCACAGATGAACAAAAGCAATAA----AACTCACATCTCAAAACTATAGACTATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       116894 362 -   1709092 agtttgacagtttcagt---------tattcaacatccctgccaattcttggtaaggtcagtcttctcaattttagacattctaagaggCAAAAACAC-----TTTTTGTGtatattttgtc----tatatatattgtatacacacatatatacac----atatgtatattctctctcatatacactttgacaaatgcacaatacgtatctatgtatatatgagacagaa------tatgtatatTCTTCAAACAAGATCAGCAAAATCAGACTTCCTGGTTCCTATAGCAAACTGGCAGTTGCTTAGATCCAAATCTCTCCATATATCCTCTAAAA--CTCACAGATGAACAAAAGCAATAA----AACTCACATCTCAAAACTATAGACTATTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17278894 379 - 121039945 agtttgacagtttcagttattcaacatattcaacatccctgccaattcttggtaaggtcagtcttctcaattttagacattctaagaggCAAAAACAC-----TTTTCGTGTATATTTTGTCAatatatatatattgtatacacacatatatacac----atatgtatattctgtctcatatacacgttgacaaatgcacaatacatatgtatgtatatatgagatagaa------tatgtatatTCTTCAAACAAGATCAGCAAAATCAGACTTCTTGGTTCCTATAGGAAATTGGCAGTTGCCTGGATCCAAATCTCTCCATATATCCTCTAAAA--CTCACAGATGAACAAAAGCAATAAAACTAACTCACATCTCAAAACTATAGACTATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60952569 369 + 169600520 agtttgacagtttcagt---------tattcaacatccctgccaattcttggtaaggtcagtcttctcaatcttagacattctaagaggCAAAAACAC-----TTTTTGTGTATATTTTGTCA--atatatatattgtacacacatatatacacac--------gtatattctctctcatatacacattgacaaacgcacaatacatatgtatgtatatatgagagagaatatttttatatatatTCTTCAAACAACATCAGCAAAATCAGACTTCCTCGTACCTACAGG-AACTGGCAGTTGCCTAGATGCAAATCTCTCCATATATCCTCTAAAA--CTCACAGATAAACAAAAGCAATAAAACTAACTCACATCTCAAAACTATAGACTATTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108479297 369 - 171882078 agtttgacagtttcagt---------tattcaacatccctgccaattcttggtaaggtcagtcttctcaatcttagacattctaagaggCAAAAACAC-----TTTTTGTGTATATTTTGTCA--atatatatattgtatacacatatatacacat--------gtatattctctctcatatacacattgacaaacgcacaatacatatgtatgtatatatgagagagaatatttttatatatatTCTTCAAACAACATCAGCAAAATCAGACTTCCTCGTTCCTACAGG-AACTGGCAGTTGCCTAGATGCAAATCTCTCCATATATCCTCTGAAA--CTCACAGATAAACAAAAGCAATAAAACTAACTCACATCTCAAAACTATAGACTATTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        95792 369 -   2311642 agtttgacagtttcagt---------tattcaacatccctgccaattcttggtaaggtcagtcttctcaatcttagacattctaagaggCAAAAACAC-----TTTTTGTGTATATTTTGTCA--atatatatattgtatacacatatatacacac--------gtatattctctctcatatacacattgacaaacgcacaatacatatgtatgtatatatgagagagaatatttttatatatatTCTTCAAACAACATCAGCAAAATCAGACTTCCTCGTTCGTACAGG-AACTGGCAGTTGCCTAGATGCAAATCTCTCCATATATCCTCTAAAA--CTCACAGATAAACAAAAGCAATAAAACTAACTCACATCTCAAAACTATAGACTATTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        87877 369 -   1987038 agtttgacagtttcagt---------tattcaacatccctgccaattcttggtaaggtcagtcttctcaatcttagacattctaagaggCAAAAACAC-----TTTTTGTGTATGTTTTGTCA--atatatatattgtatacacatatatacacac--------gtatattctctctcatatacacattgacaaacgcacaatacatatgtatctatatatgagagagaatatttttatatatatTCTTCAAACAAGATCAGC-AAATCAGACTTCCTCGTTCCTACAGGAAACTGGCAGTTGCCTAGATACAAATCTCTCCATATATCCTCTAAAA--CTCACAGATAAACAAAAGCAATAAAACTAACTCACATCTCAAAACTATAGACTATTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21168951 368 -  24206276 agtttgacagtttcagt---------tattcaacatccctgccaattcttggtaaggtcagtcttctcaattttagacattctaagaggCAAAAACAC-----TTTTTGTGTATATTTTGTCA--atacatatattgtatacacatatatacacat--------gtatattctctctcatatacacattgacaaatgcacaatacgtatgta--tgtatatgagagagaatatttttatatatatTCTTCAAACAAGATCAGCAAAATCAGACTTCCTCGTTCCTACAGGAAACTGGCAGTTGCCTAGATGCAAATCTCTCCATATATCCTCTAAAA--CTCACAGATAAACAAAAGCAGTAAAACTAACTGACGTCTCAAAACTATAGACTATTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       111176 369 -   1397330 agtttgacagtttcagt---------tattcaacatccctgccaattcttggtaaggtcagtcttctcaatcttagacattctaagaggCAAAAACAC-----TTTTTGTGTATGTTTTGTCA--atatatatattgtatacacatatatacacac--------gtatattctctctcatatacacattgacaaacgcacaatacatatgtatctatatatgagagagaatatttttatatatatTCTTCAAACAAGATCAGC-AAATCAGACTTCCTCGTTCCTACAGGAAACTGGCAGTTGCCTAGATGCAAATCTCTCCATATATCCTCTAAAA--CTCACAGATAAACAAAAGCAATAAAACTAACTCACATCTCAAAACTATAGACTATTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       108618 370 -   1784207 agtttgacagtttcagt---------tattcaacatccctgccaattcttggtaaggtcagtcttctcaattttagacattctaagaggCAAAAACAC-----TTTTTGTGTATATTTTGTCA--atatatatattgtatacacatatatacacat--------gtatattctctctcatatacacattgacaaatgcacaatacatatatatgtatatatgagagaaaatatttttatatatatTCTTCAAACAAGATCAGCAAAATCAGACTTCTTCGTTCCTACAGGAAACTGGCAGTTGCCTAGATGCAAATCTCTCCATATATCCTCTAAAA--CTCACAGATAAACAAAAGCAATAAAACTAACTCACATATCAAAACTATAGACTATTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22307969 377 + 158406734 agTTtgacagtttcagt---------tattcaacatccttgccaattcttcataaggtcagtcttctcaattttagacattctaagaggCAAAAACATTCACTTTTTGGTGTATATTTTGTCA--atatatatgatgtatacacacacgtatacatacacatatgtatactctctctcatatacacactgacaaacgcacaatacatatatatg----tatgagagagaatacg--tatatatatTTTTCAAACAAGATCAGTAAGATCAGAATTCCTGGTTCCTACAGGAAATTGGCAGTTGCCTAGATCCAAATCTCTCCATATAGCCTCCAAAA--CTCACAGATGAATTAAAGCAATAAAACTAACTCACATCTCAAAACTATAGACTATTT
i calJac3.chr6              I 234 C 0
s saiBol1.JH378108           50542796 366 +  54856640 agTTtgacagtttcagt---------tattcaacatccttgccaattcttggtaaggtcagtc-------ttttAGACAGTCTAAGAGTCAAAAAGATTCACTTTTTGGTGTATATTTTGTCA--atatatatgatgtatacacatatatatacatacacatatatata----CTCTCATATACACACTGACAAATGCACAATACATATGTATG----TATGAGAGAGAATACA--TATATATGTTTTTCAAACATCATCGTTAAGATCAGACTTCCTGGTTCCTACAGGAAATTGGCAGTTGCCTAGATCCAAATCTCTCCACAGAGCCTCCAAAA--CTCACAGATGAACTAAAGCAATAAAACTAACTCACATCTCAAAACTATGGACTATTT
i saiBol1.JH378108          I 212 C 0
s cebCap1.NW_016107610v1       687365 371 -   2910086 agTTtgacagtttcagt---------cattcaacatccttgccaattcttggtaaggtcagtcttctcaattttagacactctaagaggC-AAAACGTTCAC-TTTTGGTGCATGTTTTGTCA--Gtatatatgatgtatacacacatgtatacatacacatatgtata----ctctcatatacacactgacaaatgcacaatacatatgtatg----tatgagagagaatatg--tatatatatTTTTCAAACAAGATCGGTAAGATCAGACTTCCTGGTTCCTACAGGAAATTGGCAGTTGCCTAGATCCAAATCTCTCCATATAGCCTCCAAAA--CTCACAGATGAACTAAAGCAATAAAACTAACTCACATCTCAAAACTATGGACTATTT
i cebCap1.NW_016107610v1    I 239 C 0
s aotNan1.NW_018505940v1     40711599 359 +  42888418 agTTtgacagtttcagt---------tactctacatccttgccaattcttggtaaggtcagtcttctcaattttagacattctaagaggCAAAAACATTCACTTTTTGGTGTATATTTTGTCA--atatatatgatgtatacacatatgtata--------------------ctctcatatacacactgacaaatgcacaatacatatgtatg----tatgagagagaatacgtatatatatatTTTTCAAACAAGACTGGTAAGATCAGACTTCCTGGTTCCTACAGGAAATTGGCAGTTGCCTAGATCCAAATCTCTCCATGTAGCCTCCAAAA--CTCACAGATGAACTAAAGCAATAAAACTAATTCACATCTCAAAACTATAGACTATTT
i aotNan1.NW_018505940v1    I 239 C 0
s otoGar3.GL873530             708879 298 -  36342412 aatttaagacttccatt---------t-------atatctgacaattcttggtaagatcagtgttcttaatattagacactctTACAGGCATTAAC-T-----TTTTGGTATATATTTTG-----ATATATATGATATATAGACACACACGTATGT------------------------------GTTAAGA------------GTATGTATA----------------------TGTATTTTTTTTTCAAAATATATCAGCAACATCAGACTTCCTGGTTCTTACAGGAAA-----ATTTACCTAAATTTAAATCTTTTCCTA-ATTCTCCAAAATCCACACAGATCAACAAAAGCAATAAAACT-ACTCATATCCCCAATCTATAGAATATTT
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=1034495.000000
s hg38.chr15_KI270850v1_alt    407675 103 +    430880 GGGAGACAGGTTACCTC-AAACAATTTGCACATAAGAAGGACTCAAATGTCCAAAACCTGAAATATCTACTTCTGGAGCCAACACTAGATAGGGCTGTCACagc
s panTro5.chr15              63560117 103 +  83230942 GGGAGACAGGTTACCTC-AAACAATTTGCACATAAGAAGGACTTAAATGTCCAAAACCTGAAATATCTACTTCTGGAGCCAACACTAGATAGGGCTGTCACagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80517166 103 +  99763055 GGGAGACAGGTTACCTC-AAACAATTTGCACATAAGAAGGACTTAAATGTCCAAAACCTGAAATATCTACTTCTGGAGCCAACACTAGATAGGGCTGTCACagc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       117256 103 -   1709092 GGGAGACAGGTTACCAC-AAACAATTTGCACATAAGAAGGACTCAAATGTCCAAAACCTGAAATATCTACTTCTGGAGCCAACACTAGATAGGGCTGTCACagc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17279273 103 - 121039945 GGGAGACAGGTTACCAC-AAACAATTCGCACATAAGAGGGACTCAAATGTCCAAAACCTGAAATATCTACTTCTGGAGCCAGCACTAGATAGGGCTGTCACagc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60952938 104 + 169600520 GGGAGACAGGTTACCACAAAACAATTCGCACTTAAGAGGGACTCAAATGTCCAAAACCTGAAATACCTACTTCTGGAGCCAACACTAGATAGGGCTGTCACagc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108479666 104 - 171882078 GGGAGACAGGTCACCACAAAACAATTCGCACTTAAGAGGGACTCAAATGTCCAAAACCTGAAATACCTACTTCTGGAGCCAACACTAGATAGGGCTGTCACagc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        96161 104 -   2311642 GGGAGACAGGTTACCACAAAACAATTCGCACTTAAGAGGGACTCAAATGTCCAAAACCTGAAATACCTACTTCTGGAGCCAACACTAGATAGGGCTGTCACagc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        88246 104 -   1987038 GGGAGACAGGTTACCACAAAACAATTCGCACATAAGAGGGACTCAAATGTCCAAAACCTGAAATACCTACTTTTGGAGCCAACACTAGATAGGGCTGTCACAGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21169319 104 -  24206276 GGGAGACAGGTTACCACAAAACAATTCGCACATGAGAGGGACTCAAATGTCCAAAACCTGAAATACCTACTTCTGGAGCCAACACTAGATAGGGCTGTCACagc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       111545 104 -   1397330 GGGAGACAGGTTACCACAAAACAATTCGCACATAAGAGGGACTCAAATGTCCAAAACCTGAAATACCTACTTTTGGAGCCAACACTAGATAGGGCTGTCACAGC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       108988 104 -   1784207 GGGAGACAGGTTACCACAAAACAATTCGCACGTAAGAGGGACTTAAATGTCCAAAACCTGAAATACCTACTTCTGGAGCCAACACTAGACAGGGCTGTCACagc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22308346 103 + 158406734 AGGAGACAGGATACCAT-AAACAATTTGCACATAAGCGGGACTCAAATGTCCAAAACCTGGAATATCTACTTCTGGAGCCCACACTAGATAGGGCTGTCACAGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50543162 103 +  54856640 AGGAGACAGGATACCAT-AAACAATTTGCACATAAGAGGGACTCAAATGTCCAAAACATGGAATATCTACTTCTAGAGCCCACACTAGATAGGGCTGTCAAAGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       687736 103 -   2910086 AGAAGACAGGATACCAT-AAACAATTTGCACATAAGAGGGACTCAAATGTCCAAAACCTGGAATATCTACTTCTGGAGCCCACACTAGATAGGGCTGTCACagc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40711958 103 +  42888418 AGGAGACAGGATACCAT-AAATAATTTGCACATAAGAGGAACTCAAATGTCCAAAACCTGGAATATCTACTTCTGGATCCCACACTAGATAGGGCTGTCACagc
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e otoGar3.GL873530             709177   0 -  36342412 C

a score=548839.000000
s hg38.chr15_KI270850v1_alt    407778 89 +    430880 agcaaacaaacagaaaatggcactaaaaaacaaacaa--------acaaaaaac--tcctttacaata--gcattaaatac-c-------atcaaaacctagaga----taaa
s panTro5.chr15              63560220 89 +  83230942 agcaaacaaacagaaaatggcactaaaaaacaaacaa--------acaaaaaac--tcctttacaata--gcattaaatac-c-------atcaaaacctagaga----taaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80517269 89 +  99763055 agcaaacaaacagaaaatggcactaaaaaacaaacaa--------acaaaaaac--tcctttacaata--gcattaaatac-c-------atcaaaacctagaga----taaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       117359 89 -   1709092 agcaaacaaacagaaaatggcactaaaaaacaaacaa--------acaaaaaac--tcctttacaata--gcattaaatac-c-------atcaaaacctagaga----taaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17279376 74 - 121039945 agcaaacaaacagaaaatggcact-----------------------aaaaaac--tcctttacagta--gcattaaatac-c-------atcaaaacctagaga----taaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60953042 81 + 169600520 ag----caaacagaaaatggcactaaaaagcaaacaa--------acaaaaaaa--tcctttacatta--gtattaaatac-c-------atcaaaacctagaga--------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108479770 81 - 171882078 ag----caaacagaaaatggcactaaaaagcaaacaa--------acaaaaaaa--tcctttacatta--gtattaaatac-c-------atcaaaacctagaga--------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        96265 81 -   2311642 ag----caaacagaaaatggcactaaaaagcaaacaa--------acaaaaaaa--tcctttacatta--gtattaaatac-c-------atcaaaacctagaga--------
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        88350 83 -   1987038 AG----CAAACAGAAAATGGCACTAAAAAGCAAACAA--------ACaaaaaaa--tcctttacattagtgtattaaatac-c-------atcaaaacctagaga--------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21169423 81 -  24206276 ag----caaacagaaaatggcactaaaaagcaaacaa--------acaaaaaac--tcctttacatta--gtattaaatac-c-------atcaaaacctagaga--------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       111649 81 -   1397330 AG----CAAACAGAAAATGGCACTAAAAAGCAAACAA--------ACaaaaaaa--tcctttacatta--gtattaaatac-c-------atcaaaacctagaga--------
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       109092 85 -   1784207 ag----caaacagaaaatggcactaaaaagcaaacaa--------acaaaaaac--tcctttacatta--gtattaaatac-c-------atcaaaacttagagataaa----
i colAng1.NW_012117110v1    C 0 I 744
s calJac3.chr6               22308449 93 + 158406734 AGCAAACAAACAGAAAATGGCACTAAAAAAAAAAAAAAAACAAAACCAAAAAACCCTTCTTTACAATA--GCCTTAAGTACTC-------ATCAaaatctaa-----------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50543265 93 +  54856640 AGCAAACACACAGAAAAtagcactaaaaataaaaaaataataatttttaaaaaccctgctttacaata--gccttaaatactc-------atgaaaatctaa-----------
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       687839 91 -   2910086 agcaaacacacagaaaatggcactaaaaaaacaacaacaacaacaac--aaaaccctcctttacagta--gccttaaacactc-------attaaaatctaa-----------
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40712061 80 +  42888418 agcaaacaaacagaaaatggcacttaaaaaaa-------------ccaaaaaaccttcctttacgata--gccttaaatactc-------atcaaaatctaa-----------
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             709177 51 -  36342412 --------------------------------AGCAA--------GTAAATATC--------ACAATT--Gcattaaatgt-ccatcagaatcaaaacctaa-----------
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=301507.000000
s hg38.chr15_KI270850v1_alt    407867 34 +    430880 cttaaagaatctgcaagacatctacaaacactaa-
s panTro5.chr15              63560309 34 +  83230942 cttaaagaatctgcaagacatctacaaacactaa-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80517358 34 +  99763055 cttaaagaatctgcaagacatctacaaacactaa-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       117448 34 -   1709092 cttaaagaatctgcaagacatctacaaacactaa-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17279450 34 - 121039945 cttgaagaatctgcaagacatctacaaacactaa-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60953123 32 + 169600520 --taaagaatgtgcaagacatctacaaacactga-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108479851 32 - 171882078 --taaagaatgtgcaagacatctacaaacactga-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        96346 32 -   2311642 --taaagaatgtgcaagacatctacaaacactga-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        88433 32 -   1987038 --taaagaatgtgcaagacatctacaaacactga-
i cerAty1.NW_012002657v1    C 0 I 310
s chlSab2.chr29              21169504 32 -  24206276 --taaagaatgtgcaagacatctacaaacactga-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       111730 32 -   1397330 --taaagaatgtgcaagacatctacaaacactga-
i manLeu1.NW_012106908v1    C 0 I 310
s calJac3.chr6               22308542 34 + 158406734 ctcaaagaatgtacaagacatctacgaacactga-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50543358 34 +  54856640 cttaaagaatgtgcaagacatctacaaacactga-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       687930 34 -   2910086 cttaaagaatgtgcaagacatctacaaacactga-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40712141 34 +  42888418 cttaaagaatgtgcaagacatctacaaacacaga-
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             709228 33 -  36342412 --caaaggatatacgagatgcctacaaaatatcaa
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e colAng1.NW_012117110v1       109177 744 -   1784207 I

a score=8790.000000
s hg38.chr15_KI270850v1_alt    407901 1 +    430880 g
s panTro5.chr15              63560343 1 +  83230942 g
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80517392 1 +  99763055 g
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       117482 1 -   1709092 t
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17279484 1 - 121039945 g
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60953155 1 + 169600520 g
i rheMac8.chr7              C 0 I 311
s macFas5.chr7              108479883 1 - 171882078 g
i macFas5.chr7              C 0 I 311
s macNem1.NW_012011945v1        96378 1 -   2311642 g
i macNem1.NW_012011945v1    C 0 I 311
s cerAty1.NW_012002657v1        88775 1 -   1987038 g
i cerAty1.NW_012002657v1    I 310 C 0
s chlSab2.chr29              21169536 1 -  24206276 g
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       112072 1 -   1397330 g
i manLeu1.NW_012106908v1    I 310 C 0
s calJac3.chr6               22308576 1 + 158406734 g
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50543392 1 +  54856640 g
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       687964 1 -   2910086 g
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40712175 1 +  42888418 g
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             709261 1 -  36342412 g
i otoGar3.GL873530          C 0 I 1
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e colAng1.NW_012117110v1       109177 744 -   1784207 I

a score=32760.000000
s hg38.chr15_KI270850v1_alt    407902 3 +    430880 aaa
s panTro5.chr15              63560344 3 +  83230942 aaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80517393 3 +  99763055 aaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       117483 3 -   1709092 aaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17279485 3 - 121039945 aaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60953467 3 + 169600520 aaa
i rheMac8.chr7              I 311 C 0
s macFas5.chr7              108480195 3 - 171882078 aaa
i macFas5.chr7              I 311 C 0
s macNem1.NW_012011945v1        96690 3 -   2311642 aaa
i macNem1.NW_012011945v1    I 311 C 0
s cerAty1.NW_012002657v1        88776 3 -   1987038 aaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21169537 3 -  24206276 aaa
i chlSab2.chr29             C 0 I 2772
s manLeu1.NW_012106908v1       112073 3 -   1397330 aaa
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22308577 3 + 158406734 aaa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50543393 3 +  54856640 aaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       687965 3 -   2910086 aaa
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40712176 3 +  42888418 aaa
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             709263 3 -  36342412 aaa
i otoGar3.GL873530          I 1 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e colAng1.NW_012117110v1       109177 744 -   1784207 I

a score=859574.000000
s hg38.chr15_KI270850v1_alt    407905 110 +    430880 atttttaaagaccagataagcaaaggga--tatatcaacttcttgaattggaagacttgtcaacatatccattatccagaacttgattcataggttcaacgcaatcccaatc
s panTro5.chr15              63560347 110 +  83230942 atttttaaagaccagataagcaaaggga--tatatcaacttcttgaattggaagacttgtcaacatatccattatccagaacttgattcataggttcaatgcaatcccaatc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80517396 110 +  99763055 atttttaaagaccagataagcaaaggga--tatatcaacttcttgaattggaagacttgtcaacatatccattatccagaacttgattcataggttcaatgcaatcccaatc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       117486 110 -   1709092 atttttaaagaccagataagcaaaggga--tatatcaacttcttgaattggaagacttgtcaacatatccattatccagaacttgattcataggttcaatgcaatcccaatc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17279488 110 - 121039945 atttttaaagaccagataaacaaaagga--tatatcaacttcttgaattggaagacttgtcaacatatccattatccagaacttgattcataggttcgacgcaatcccaatc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60953470 110 + 169600520 atttttaaaaaccagataagcaaaggga--tataccaacttcttaaattagaagacttgtcaacacatccatgatccagaacttgattcacaggtttaatgcaatcccagtc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108480198 110 - 171882078 atttttaaaaaccagataagcaaaggga--tataccaacttcttaaattagaagacttgtcaacacatccatgatccagaacttgattcacaggtttaatgcaatcccagtc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        96693 110 -   2311642 atttttaaaaaccagataagcaaaggga--tataccaacttcttaaattagaagacttgtcaacacatccatgatccagaacttgattcacaggtttaatgcaatcccagtc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        88779 110 -   1987038 atttttaaaaaacagataagcaaaggga--tataccaacttcttaaattagaagacttgtcaacacatccatgatccagaacttgattcataggtttaatgcaatcccagtc
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012106908v1       112076 110 -   1397330 atttttaaaaaacagataaacaaaggga--tataccaacttcttaaattagaagacttgtcaacacatccatgatccagaacttgattcataggtttaatgcaatcccagtc
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22308580 110 + 158406734 atttttaaagaccagataaacaaaggga--tatgccggcttcttgaactggaagacttgttaacatatccatcattcagaaattgatttatacacaaaacgcaatcccaatc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50543396 110 +  54856640 atttttaaagaccagataaacaaaggga--tatgccagcttcttgaactggaagacttgttaacatatccatcatccagaaattgattcatagacaaaatgcaatcccaatc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       687968 110 -   2910086 atttttaaagaccagataaacaaaggga--tatgccagcttcttgaactggaagacttgttaacatatccatcatccagaaattgattcatagacaaaatgcaatcctaatc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40712179 110 +  42888418 atttttaaagaccagataaacaaagaga--tatgccagcttcttgaactggaagacttgttaacatatccatcatccagaaattgattcacagacaaaacgtaatcccaatc
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             709266 108 -  36342412 attttaaaagatacagtaaacaaagaaatgtgtaccagcttcatgtattggaagacttgttaacat----actatccacaaacagagccatagattcaatatagccccaatc
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e colAng1.NW_012117110v1       109177 744 -   1784207 I
e chlSab2.chr29              21169540 2772 -  24206276 I

a score=2700263.000000
s hg38.chr15_KI270850v1_alt    408015 302 +    430880 aaaatcccagtagaactttgtgtatgtggggcagggggtggagcttggactgatgagctgaatctataatttatatagaaatgtgaagatc------caagaaaagccaagaatccaaaaagacaaagttgaaggacttcactaccaactatcaaagcctattataaagctacaataattaagacacaaggacagata-aatagatcaatggaagagaagagagtatccagaaacggatctgtacatatactatggatgcctgatttatgagaaaggcaacatggcaatacaatttaaaagaattttct
s panTro5.chr15              63560457 302 +  83230942 aaaatcccagtagaactttgtgtatgtggggcagggggtggagcttggactgatgagctgaatctataatttatatagaaatgtgaagatc------caagaaaagccaagaatccaaaaagacaaagttgaaggacttcactaccaactatcaaagcctattataaagctacaataattaagacacaaggacagata-aatagatcaatggaagagaagagagtatccagaaacggatctgtacatatactatggatgcctgatttatgagaaaggcaacatggcaatacaatttaaaagaattttct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80517506 302 +  99763055 aaaatcccagtagaactttgtgtatgtggggcagggggtggagcttggactgatgagctgaatctataatttatatagaaatgtgaagatc------caagaaaagccaagaatccaaaaagacaaagttgaaggacttcactaccaactatcaaagcctattataaagctacaataattaagacacaaggacagata-aatagatcaatggaagagaagagagtatccagaaacggatctgtacatatactatggatgcctgatttatgagaaaggcaacatggcaatacaatttaaaagaattttct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       117596 302 -   1709092 aaaatcccagtagaactctgtgtatgtgaggcggggggtggagcttggactgatgagctgaatctataatttatatagaaatgtgaagatc------caagaaaagccaagaatccaaaaagacaaagttgaaggacttcactaccaactatcaaagcctattagaaagctacaataactaagacacaaggacagata-aatagatcaatggaagagaagagagtatccagaaacggatctgtacgtatactatggatgcctgatttatgagaaaggcaacatggcaatacaatttaaaagaattttct
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17279598 298 - 121039945 aatatcccagtagaactttgtgtatgtggggcggggggtggagcttggactgatgagctgaatctataatttatatagaaatgtgaagatc------caagaaaagccaagaatccaaaaagacaaagttgaaggacttcactacc----atcaaagcctattataaacctacaataattaagacacaaggacagata-aatagatcaatggaagagaagagagtatccagaaatggaactgtacatatactatggatgcctgatttatgagaaaggcaacatggcaatacaatttaaaagaatcttct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60953580 300 + 169600520 aaaatcctagtagaactttgtgtatgtggggcggggggtggagcctggactgatgagctgaatttataatttatatagaaatgtgaagatc------caagaaaagccaagaatccaaaaagacaaagttgaagggcttcactaccaactatcaaggcctattataaagctacaataattaag--acaaggacagata-aatagaccaatggaagagaagagagtatccagaaactgatctgtacatatactatggatgcctgatttatgagaaaggcgacatggcaatacaatttagaagaaatttct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108480308 300 - 171882078 aaaatcctagtagaactttgtgtatgtggggcggggggtggagcctggactgatgagctgaatttataatttatatagaaatgtgaagatc------caagaaaagccaagaatccaaaaagacaaagttgaagggcttcactaccaactatcaaggcctattataaagctacaataattaag--acaaggacagata-aatagaccaatggaagagaagagagtatccagaaactgatctgtacatatactatggatgcctgatttatgagaaaggcgacatggcaatacaatttagaagaaatttct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        96803 300 -   2311642 aaaatcctagtagaactttgtgtatgtggggcggggggtggagcctggactgatgagctgaatttataatttatatagaaatgtgaagatc------caagaaaagccaagaatccaaaaagacaaagttgaagggcttcactaccaactatcaaggcctattataaagctacaataattaag--acaaggacagata-aatagaccaatggaagagaagagagtatccagaaactgatctgtacatatactatggatgcctgatttatgagaaaggcgacatggcaatacaatttagaagaaatttct
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        88889 300 -   1987038 aaaatcctagtagaactttgtgtatgtggggcggggggtggagcttggactgatgagctgaatttataatttatatagaaatatgaagatc------caagaaaagccaagaatccaaaaagacaaagttgaagggcttcactaccaactatcaaggcctattataaagctacaataattaag--acaaggacagata-aatagaccaatggaagagaagagagtatccagaaactgatctgtacatatactatggatgcctgatttatgagaaaggcgacatagcaatacaatttagaagaaatttct
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012106908v1       112186 300 -   1397330 aaaatcctagtagaactttgtgtatgtggggcggggggtggagcttggactgatgagctgaatttataatttatatagaaatgtgaagatc------caagaaaagccaagaatccaaaaagacaaagttgaagggcttcactaccaactatcaaggcctattataaagctacaataattaag--acaaggacagata-aatagaccaatggaagagaggagagtatccagaaactgatctgtacatatactatggatgcctgatttatgagaaaggcgacatggcaatacaatttagaagaaatttct
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       109921 300 -   1784207 aaaatcctagtagaactttgtgtatgtggggcgggggatggagcttggactgatgagctgaatttataatttatatagaaatgcaaagatc------caagaaaagccaagaatccaaaaagacaaagttgaaggacttcactaccaactatcaaagcctattataaagctacaataattaac--acaaggacagata-aatagaccaatggaagagaagagagtatccagaaactgatctgtacatatactatggatgcctgatttatgagaaaggcgacatggcaatacaatttagaagaaatttct
i colAng1.NW_012117110v1    I 744 C 0
s calJac3.chr6               22308690 303 + 158406734 aaaatcccagtataactttgtgtatgtggggtttgg---ggagcttggactgataagctaaatctaaaatttatatggaaatgtcaagatc--caaaaaaaaaaagccaagaatccaaaaagaccaagttgaaggacttcactaccaactatcaatgccaattaaaaagctacaataattaagacagaaggacagata-aatagatcaatggaagagaagcaagtatccagaaacagatctgcacatatattacagatacctgatttatgagaaaggtgacatagcaatacaatttaaaagaattttct
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50543506 304 +  54856640 aaaatcctagtataactttgtgtatatggggttcgg---gcagcttggactgataagctgaatctaaaatttatatggaaatgtgaagatt-aaaaaaaaaaaaagccaagaatccaaaaagacaaagttgaaggacttcattaccaactatcaatgccaattacaaagctacaataattaagacagaaggacagatg-aacagatcaatggaagagaagcaagtatccagaaacagatctgcacatatattacagacacctgatttatgagaaaggtgacatagcaatacaatttaaaagaattttct
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       688078 305 -   2910086 aaaatcccagtacaactttgtgtatatggggtgtgg---ggagcttggactgatgagctgtatctaaaatttatatggaaatgtgaagatccaaaaaaaaaaaaagccaagaatccaaaaagacaaagttgaaggacttcactaccaactatcaatgccaattaaaaagctacaataattaagacagaaggacagata-aatagatcaatggaacagaagcaagtatccagaaacagatctgcacatatattacagatacctgatttatgagaaaggtgacatagcaatacaatttaaaagaattttct
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40712289 296 +  42888418 aaaa-cccagtataactttgtgtatgtggggttcag---ggagcttggactgatgagctgaatctaaaattcataaggaaatgtgaagatc----caaaaaaaaagccaagaatccaaaaagacaaagttgaaggacttcactaccaactatcaatgccaattaaaaagctacaataattaagacagaaggacagata-aatagatcaatggaagag----aagtatccagaaacatatctgcacatatattacagatacctgatttatgagaaaggtgacatagcaatacaatttaaaagaattttct
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             709374 257 -  36342412 aaaatcccagcaggtcactatgtattt--agcaggg---------tggaccgacaagtt-aatctatactttatatggaaacgcaaaaatt---------------------at---aaaggacagaagtggagaacctcactac----tatcaaaacctattataaagctgtagtaatcaagacacaaggacagagagaatacaacaa-----------agagcatccagaaacagatctgcatatctactatgtactcctgacttatgagaaaggtgacat-gtagtgcaattaaaaaagaCTTTTT
i otoGar3.GL873530          C 0 I 1956
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e chlSab2.chr29              21169540 2772 -  24206276 I

a score=2450467.000000
s hg38.chr15_KI270850v1_alt    408317 286 +    430880 ttcaccaaaatgatgctgagtcaactggctatccacacagaacaaaattaatcttccccttct----tataccatgtacaaaacaaaattccagatgggttgcaaatctaagtgtgaaaggt-aaaacaactttagaaaagaaaca----tatactaccttcatgaccttggaataggcaaatatttcttaaacaggccac-aagcattaaacacaatggaataaagtcagtaaattatacttcattacaattt-aagttttctgttattcaaaaga---------------------cgccaattaagagtacaaag
s panTro5.chr15              63560759 290 +  83230942 ttcaccaaaatgatgctgagtcaactggctatccacacagaacaaaattaatcttccccttctatcttataccatgtacaaaacaaaattccagatgggttgcaaatctaagtgtgaaaggt-aaaacaactttagaaaagaaaca----tatactaccttcatgaccttggaataggcaaatatttcttaaacaggccac-aagcattaaacacaatggaataaagtcagtaaattatacttcattacaattt-aagttttctgttattcaaaaga---------------------tgccaattaagagtacaaag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80517808 290 +  99763055 ttcaccaaaatgatgctgagtcaactggctatccacacagaacaaaattaatcttccccttctatcttataccatgtacaaaacaaaattccagatgggttgcaaatctaagtgtgaaaggt-aaaacaactttagaaaagaaaca----tatactaccttcatgaccttggaataggcaaatatttcttaaacaggccac-aagcattaaacacaatggaataaagtcagtaaattatacttcattacaattt-aagttttctgttattcaaaaga---------------------tgccaattaagagtacaaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       117898 286 -   1709092 ttcaccaaaatgatgctgagtcaactggctatccacacagaacaaaattaatcttccccttctatcttataccatgtacaaaacaaaattccagatgggtggcaaatctaagtgtgaaaggtaaaaacaactttagaaaagaaaca----tatactaccttcatgaccttggaataggcaaatatttcttaaacaggccac-aagcattaaacacaatggaataaagtcagtaaattatacttcattacaat------ttttctgttattcaaaaga---------------------cgccaattaagagtacaaag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17279896 290 - 121039945 ttcaccaaaatgatgctgagtcaactggctatccacacagaacaaaattaatcttccccctctatcttataccatgtacaaaacaaaattccagatgggctgcaaatctaagtgtgaaaggt-aaaacaacttttgaaaagaaaca----tatactaccttcatgaccttggaataggcaaatatttcttaaacaggtcac-aagcattaaacacaatggaataaagtcagtaaattatacttcattacaattt-aagttttctgttacccaaaaga---------------------caccaattaagagtacaaac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60953880 290 + 169600520 tccaccaaaatgatgctgagtcaactggttatccacacagaacaaaataaatcttctccctctagcttacaccatgtacaaaacaaaattccagatgagttgcaaatctaagtgtgaaaggt-aaaacaacttttgaaaagaaaca----tatactacctccatgaccttggaataggcaaatatttcttaaacaggccac-aagcattaagcacaatggaataaagtcattaaattatacttcattacaattt-aagttttctgttattcaaaaga---------------------caccaattaagagtacaaag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108480608 290 - 171882078 tccaccaaaatgatgctgagtcaactggttatccacacagaacaaaataaatcttctccctctagcttacaccatgtacaaaacaaaattccagatgagttgcaaatctaagtgtgaaaggt-aaaacaacttttgaaaagaaaca----tatactacctccatgaccttggaataggcaaatatttcttaaacaggccac-aagcattaagcacaatggaataaagtcattaaattatacttcattacaattt-aagttttctgttattcaaaaga---------------------caccaattaagagtacaaag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        97103 290 -   2311642 tccaccaaaatgatgctgagtcaactggttatccacacagaacaaaataaatcttctccctctagcttacaccatgtacaaaacaaaattccagatgagttgcaaatctaagtgtgaaaggt-aaaacaacttttgaaaagaaaca----tatactacctccatgaccttggaataggcaaatatttcttaaacaggccac-aagcattaagcacaatggaataaagttattaaattatacttcattacaattt-aagttttctgttattcaaaaga---------------------caccaattaagagtacaaag
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        89189 290 -   1987038 tccaccaaaatgatgctgagtcaactggttatccacacagaacaaaataaatcttccccctctagcttacaccatgtacaaaacaaaatttcagatgagttgcaaatctaagtgtgaaaggt-aaaacaacttttgaaaagaaaca----tatactacctccatgaccttggaataggcaaatatttcttaaacaggccac-aagcattaagcacaatggaataaagtcattaaattatacttcattacaattt-aagttttctgttattcaaaaga---------------------caccaattaagagtacaaag
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012106908v1       112486 290 -   1397330 tccaccaaaatgatgctgagtcaactggttatccacacagaacaaaataaatcttccccctctagcttacaccatgtacaaaacaaaatttcagatgagttgcaaatctaagtgtgaaaggt-aaaacaacttttgagaagaaaca----tatactacctccatgaccttggaataggcaaatatttcttaaacaggccac-aagcattaagcacaatggaataaagtcattaaattatacttcattacaattt-aagttttctgttattcaaaaga---------------------caccaattaagagtacaaag
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       110221 290 -   1784207 tccaccaaaatgatgctgagtcaac-ggttatccacacagaacaaaattaatcttccccctctagcttacaccatgtacaaaacaaaattccaaatgggttgcaaatctaagtgtgaaaggt-aaaacaacttttgacaagaaacg----tatactacctccatgaccttgtaataggcatatatctcttaaacaggccac-aagcattaagcacaatggaataaagtcattaaattatacttcattacaatttaaagttttctgttattcaaaaga---------------------caccaattaagagtacaaag
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22308993 290 + 158406734 ttcaccaaaatgatgctgagtcaactggctattcatacagaacaaaattaatcttgcccctctagcttataccatgtacaaaacaaaattccagatgtgttataaatctaagtgtgaaaggt-aaaacaacttttgaaaagaaacagtattatactacctttatgaccatggaaaaggcaaacatttcttaaacaggccacgaagcattaagaat-----aataaagtcaataaattacacttaattacaattt-aagttttctgttattcataaga---------------------caccaattaagattacaaag
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50543810 316 +  54856640 ttctccaaaatgatgctaagttgactggctattcatacagaacaaaattaatcttgcccctctagcttataccatgtacaaaacaaaattccagatgagttataaatctaagtgtgaaaggt-aaaacaacttttgaaaagagacagtattatactaccttcatggccatggaaaaggcaaacgtttcttaaacaggccacaaagcattaagaataatggaataaagtcagtagattacacttaattacaattt-aagttttctgttATTCATAATAACAGAATTATTATTATGTATGTACCAATTAAGAGTACAAAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       688383 295 -   2910086 ttcaccaaaatgatgctgagtcaactggatattcatacagaacaaaattaatcttgcccctctagcttacaccacgtacaaaacaaaattccggatgggttataaatctaagtgtgaaaggt-aaaacaacttttgaaaagagacagcattataccaccttcatgaccatggaaaaggcaaacatttcttaaacaggccacaaagcattaagaataatggaataaagtcagtaaatgacacttaattacaattt-aagttttctgttattcataaga---------------------tatcaattaagagtacaaag
i cebCap1.NW_016107610v1    C 0 I 8883
s aotNan1.NW_018505940v1     40712585 295 +  42888418 ttcaccaaaatgatgctgagtcaactggctattcatacataacaaaattaatcttgcccctctagcttttaccacatgcaaagcaaaattccagatgggttataaatctaagtgtgaaaggt-aaaacaacttttgaaaagaaacagtattatactaccttcctgaccatggaaaaggcaaacatttcttaaacaggccacaaagcattaagaataattgaataaagtcagtaaattacacttaattacaattt-aagttttctgttattcataaga---------------------caccaattaagagtacaaag
i aotNan1.NW_018505940v1    C 0 I 4451
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e otoGar3.GL873530             709631 1956 -  36342412 I
e chlSab2.chr29              21169540 2772 -  24206276 I

a score=17368.000000
s hg38.chr15_KI270850v1_alt    408603 3 +    430880 aca
s panTro5.chr15              63561049 3 +  83230942 aca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80518098 3 +  99763055 aca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       118184 3 -   1709092 aca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17280186 3 - 121039945 aca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60954170 3 + 169600520 gca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108480898 3 - 171882078 gca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        97393 3 -   2311642 gca
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        89479 3 -   1987038 gca
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012106908v1       112776 3 -   1397330 gca
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       110511 3 -   1784207 gca
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22309283 3 + 158406734 gca
i calJac3.chr6              C 0 I 8921
s saiBol1.JH378108           50544126 3 +  54856640 GCA
i saiBol1.JH378108          C 0 I 3129
e aotNan1.NW_018505940v1     40712880 4451 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       688678 8883 -   2910086 I
e otoGar3.GL873530             709631 1956 -  36342412 I
e chlSab2.chr29              21169540 2772 -  24206276 I

a score=2732672.000000
s hg38.chr15_KI270850v1_alt    408606 598 +    430880 aatcacagactcaaagaaaataattttaatacatatttcagacaaagaactcatatgtggcctatataaagaactgctacaagtaaacaagaaaaaggtagataaccctaagaaaaatgagtataaggcctgaagagacacttcaagaaaaaggatatccaaaggccagtaaacatgaaaatgtgctcaacttcatcagtcactaaggacatgaacattaaaaccacaacagatactgctacatacaccccaaaatggctaaaatgaaagacaatacaattattgatgaggatatgaaacaacccaaaccatcgtacaccactggaagtgtaaactggtataaccactgagaaaaactggcagcatctcaaagataaacatacgtataccctatgacccaacaatccctctcct-aggaagataaccaagggaaattaattcaccaaaagataatagcagcactattcgcaatggccccaaactggaaacaactcaaatgcctattaacagtataatgaataagcactggtacattcatacaatggaatactgtaaagcaacaggaatcaatgacccacaaccagttgcaacatggatg
s panTro5.chr15              63561052 598 +  83230942 aatcacagactcaaagaaaataattttaatacatatttcagacaaagaactcatatgtggcctatataaagaactgctacaagtaaacaagaaaaaggtagataaccctaagaaaaatgagtataaggcctgaagagacacttcaagaaaaaggatatccaaaggccagtaaacatgaaaatatgctcaacttcatcagtcactaaggacatgaacattaaaaccacaacagatactgctacatacaccccaaaatggctaaaatgaaagacaatacaattattgatgaggatatgaaacaacccaaaccatcgtacaccactggaagtgtaaactggtataaccactgagaaaaactggcagcatctcaaagataaacatacatatactctatgacccaacaatccctctcct-aggaagataaccaagggaaattaattcaccaaaagataatagcagcactattcgcaatggccccaaactggaaacaactcaaatgcctattaacagtataatgaataagcactggtacattcatacaatggaatactgtaaagcaacaggaatcaatgacccacaaccagttgcaacatggatg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80518101 598 +  99763055 aatcacagactcaaagaaaataattttaatacatatttcagacaaagaactcatatgtggcctatataaagaactgctacaagtaaacaagaaaaaggtagataaccctaagaaaaatgagtataaggcctgaagagacacttcaagaaaaaggatatccaaaggccagtaaacatgaaaatgtgctcaacttcatcagtcactaaggacatgaacattaaaaccacaacagatactgctacatacaccccaaaatggctaaaatgaaagacaatacaattattgatgaggatatgaaacaacccaaaccatcgtacaccactggaagtgtaaactggtataaccactgagaaaaactggcagcatctcaaagataaacatacgtatactctatgacccaacaatccctctcct-aggaagataaccaagggaaattaattcaccaaaagataatagcagcactattcgcaatggccccaaactggaaacaactcaaatgcctattaacagtataatgaataagcactggtacattcatacaatggaatactgtaaagcaacaggaatcaatgacccacaaccagttgcaacatggatg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       118187 598 -   1709092 aatcacagactcaaagaaaataattttaatacatatttcagacaaagaactcatatgtggcctatataaagaactgctacaagtaaacaagaaaaaggtagataaccctaagaaaaatgagtataaggcctgaagagacacttcaagaaaaaggatatccaaaggccagtaaacatgaaaatgtgctcaacttcatcagtcaccaaggacatgaacattaaaaccacaacagatactgctacatacaccccaaaatggctaaaatgaaagacaatacaattattgatgaggatatgaaacaacccaaaccatcgtacaccactggaagtgtaaactggtataaccactgagaaaaactggcagcatctcaaagataaacatacatataccctatgacccaacaatccctctcct-aggaagataaccaagggaaattaattcaccaaaagataatagcagcactattcacaatggccccaaactggaaacaactcaaatgcctattaacagtataatgaataagcactggtacattcatacaatggaatactgtaaagcaacaggaatgaatgacccacaaccagttgcaacatggatg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17280189 598 - 121039945 aatcacagactcgaagaaaataattgtaatacatatttcagacaaagaactcatatgtggcctatataaagaactgctacaagtaaacaagaaaaaggtagataaccctaagaaaaatgagtataaggcctgaagagacacttcaagaaaaaggatatccaaaggccaataaacatgaaaatgtgctcaacttcatcagtcaccaaggacatgaacattaaaaccacaacagatactgctacatacgccccaaaatggctaaaatgaaagacagtacaattattgatgaggatatgaaacaacccaaaccatcgcacaccactggaagtgtaaactggtataaccactgagaaaaactggcagcatctcaaagataaacgtatgtatgccctatgacccaacaatccctctcct-acgaagataaccaagagaaattaattcgccaaaagataatagcagcactactcacaatggccccaaactggaaacaacacaaatgcctattaacagtataatgaataagcactgctacactcatacaatggaatactgtaaagcaacaggtatgaatgacccacaactagctgcaacatggatg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60954173 571 + 169600520 aaccacagactcgaagaaaataattgtaatacatatttcagagacagaactc--atgtggcttatataaagaactgctacaagtaaacaacaaaaaggtagataaccctaagaaaaatgagtataaggcatgaagagacacttcaagaaaaaggatatccaaaggccaataaacatgcaaatgtgctcaacttcattagtcaccaaggaaatgaacattaaaaccacaacagatactgctacatactctccaaaatggctaaaatgaaagacaa---------tgatgaggatatgaaacaacgcaaaacactgtacactactagaagtgcaaactggtataaccactgagaaaaactggcagcatctcaaagataaacatatgtata-----------------ccctctcctaaggaagataatcaagagaaattaattcaccaaaagataatagcagcactactcacaatggccccaaactggaaacaactcaaatgcctattaacagtataacgaataatcattggtacattcatacgatgaaatactgtaaagcaacagaaatgaatgatccacaaccagttgcaatatggatg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108480901 571 - 171882078 aaccacagactcgaagaaaataattgtaatacatatttcagagacagaactc--atgtggcttatataaagaactgctacaagtaaacaacaaaaaggtagataaccctaagaaaaatgagtataaggcatgaagagacacttcaagaaaaaggatatccaaaggccaataaacatgcaaatgtgctcaacttcattagtcaccaaggaaatgaacattaaaaccacaacagatactgctacatactctccaaaatggctaaaatgaaagacaa---------tgatgaggatatgaaacaacgcaaaacactgtacactactagaagtgcaaactggtataaccactgagaaaaactggcagcatctcaaagataaacatatgtata-----------------ccctctcctaaggaagataatcaagagaaattaattcaccaaaagataatagcagcactactcacaatggccccaaactggaaacaactcaaatgcctattaacagtataacgaataatcattggtacattcatacaatgaaatactgtaaagcaacagaaatgaatgatccacaaccagttgcaatatggatg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        97396 571 -   2311642 aaccacagactcgaagaaaataattgtaatacctatttcagagacagaactc--atgtggcctatataaagaactgctacaagtaaacaacaaaaaggtagataaccctaagaaaaatgagtataaggcatgaagagacacttcaagaaaaaggatatccaaaggccaataaacatgcaaatgtgctcaacttcattagtcaccaaggaaatgaacattaaaaccacaacagatactgctacatactctccaaaatggctaaaatgaaagacaa---------tgatgaggatatgaaacaacgcaaaacactgtacactactagaagtgcaaactggtataaccattgagaaaaactggcagcatctcaaagataaacatatgtata-----------------ccctctcctaaggaagataatcaagagaaattaattcaccaaaagataatagcagcactactcacaatggccccaaactggaaacaactcaaatgcctattaacagtataacgaataatcattggtacattcatacgatgaaatactgtaaagcaacagaaatgaatgatccacaaccagttgcaatatggatg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        89482 582 -   1987038 aaccacagactcgaagaaaataattgtaatacagatttcagagacagaactcatatgtggcctatataaagaactgctacaagtaaacaacaaaaaggtagataaccctaagaaaaatgagtataaggcatgaagagacacttcaagaaaaaggatatccaaaggccaataaacatgcaaatgtgctcaacttcattagtcatcaaggaaatgaacattaaaaccacaacagatactgctacatactctccaaaatggctaaaatgaaagacaatgcaattattgatgaggatatgaaacaacccaaaacactgtacactactagaagtgcaaactggtataaccactgagaaaaactggcagcatctcaaagataaacatatgtata-----------------ccctctcctaaggaagataatcaagagaaattaattcaccaaaagataatagcagcactactcacaatggccccaaactggaaacaactcaaatgcctattaacagtataacgaataatcactggtacattcatacaatgaaatactgtaaagcaacagaaatgaatgatccacaaccagctgcaatatggatg
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012106908v1       112779 582 -   1397330 aaccacagactcgaagaaaataattgtaatacatatttcagagacagaactcatacgtggcctatataaagaactgctacaagtaaacaacaaaaaggtagataaccctaagaaaaatgagtataaggcatgaagagacacttcaagaaaaaggatatccaaaggccaataaacatgcaaatgtgctcaacttcattagtcaccaaggaaatgaacattaaaaccacaacagatactgctacatactctccaaaatggctaaaatgaaagacaatgcaattattgatgaggatatgaaacaacccaaaacactgtacactactagaagtgcaaactggtataaccactgagaaaaactggcagcatctcaaagataaacatatgtata-----------------ccctctcctaaggaagataatcaagagaaattaattcaccaaaagataatagcagcactactcacaatggccccaaactggaaacaactcaaatgcctattaacagtataacgaataatcactggtacattcatacaatgaaatactgtaaagcaacagaaatgaatgatccacaaccagctgcaatatggatg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       110514 582 -   1784207 aaccacagactcgaagaaaataattgtaatacatatttcagagacagaactcatatgtggcctatataaagaactgctacaagtaaacaagaaaaaggtagataaccctaagaaaaatgagtataaggcatgaagagacacttcaagaaaaaggatatccaaaggccaataaacatgcaaatgtgctcaacttcattagtcaccaaggaaatgaacattaaaaccacaacagatactgttacatactctccaaaatggctaaaatgaaagacaatacaattattgacgaggatatgaaacaacccaaaacactgcacactactagaagtgcaaactggtataaccactgagaaaaactggcagcatctcaaaggtaaacatatgtata-----------------ccctctcctaaggaagataatcaagagaaattaattcaccaaaagataacagcagcactactcacaatggccccaaactggaaacaactcaaatgcctattaacagtataacgaataatcattggtacattcatacaatgaaatactgtaaagcaacagaaatgaatgatccacaaccagttgcaacatggatg
i colAng1.NW_012117110v1    C 0 C 0
e aotNan1.NW_018505940v1     40712880 4451 +  42888418 I
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22309286 8921 + 158406734 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       688678 8883 -   2910086 I
e otoGar3.GL873530             709631 1956 -  36342412 I
e chlSab2.chr29              21169540 2772 -  24206276 I
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=818513.000000
s hg38.chr15_KI270850v1_alt    409204 135 +    430880 aaactcacagctaaagagtacatatctgggccgggtgtggttgctcacccctataatctcagcactttgggaagccaaggcaggcggatcacgaggtcaggagtttgagaccagccttgccaatatggtgaatat
s panTro5.chr15              63561650 135 +  83230942 aaactcacagctaaagagtacatatctgggccgggtgcggttgctcacccctataatctcagcactttgggaggccaaggcaggcggatcacgaggtcaggagtttgagaccagccttgccaatatggtgaatat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80518699 135 +  99763055 aaactcacagctaaagagtacatatctgggccgggtgcggttgctcacccctataatctcagcactttgggaggccaaggcaggcggatcacgaggtcaggagtttgagaccagccttgccaatatggtgaatat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       118785 135 -   1709092 aaactcacagctaaagagtacatatctgggccgggtgcggttgctcacccctataatctcagcactttgggaggccaaggcaggtggatcacgaggtcaggagtttgagaccagccttgccaatatggtgaatat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17280787 135 - 121039945 aaactcacagctaaagagtacatatctgggccgggtgcggttgctcacccctgtaatcttagcactttgggaggccgaggcaggcggatcacgaggtcaggagtttgagaccagccttgccaatatggtgaatat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60954744 134 + 169600520 aaactcacagctaaagagtacatacctgggcc-ggcacagtggctcatgcctgtaatcccagcactttgggaggctgaggcgggatgatcacgaggtcaggagtttgagaacagcctggccaatatggtgaatat
i rheMac8.chr7              C 0 I 5
s macFas5.chr7              108481472 134 - 171882078 aaactcacagctaaagagtacatacctgggcc-ggcacagtggctcatgcctgtaatcccagcactttgggaggctgaggcgggatgatcacgaggtcaggagtttgagaacagcctggccaatatggtgaatat
i macFas5.chr7              C 0 I 5
s macNem1.NW_012011945v1        97967 134 -   2311642 aaactcacagctaaagagtacatacctgggcc-ggcacagtggctcatgcctgtaatcccagcactttgggaggctgaggcgggatgatcacgaggtcaggagtttgagaacagcctggccaatatggtgaatat
i macNem1.NW_012011945v1    C 0 I 5
s cerAty1.NW_012002657v1        90064 134 -   1987038 aaactcacagctaaagagtacatacctgggcc-ggcatggtagctcatgcctgtaatcccagcactttgggaggctgaggcaggatgatcacgaggtcaggagtttgagaacagcctggccaatatggtgaatat
i cerAty1.NW_012002657v1    C 0 I 5
s manLeu1.NW_012106908v1       113361 134 -   1397330 aaactcacagctaaagagtacatacctgggct-ggcatggtagctcatgcctgtaatcccagcactttgggaggctgaggcaggatgatcacgaggtcaggagtttgagaacagcctggccaatatggtgaatat
i manLeu1.NW_012106908v1    C 0 I 5
s colAng1.NW_012117110v1       111096 134 -   1784207 aaactcacagctaaagagtacatatctgggcc-agcgcagtggctcatgcctgtaatcccagcactttgggaggctgaggcgggaggatcatgaggtcaggagtttgagaccagcctggccaatatggtgaatat
i colAng1.NW_012117110v1    C 0 I 9
s calJac3.chr6               22318207 131 + 158406734 aaattcacacctaaagagtacatatctgggccaggcgcagtggctcacacctgtaatctcagcactttgggaggccaaggcaggcagatcaccaggtcaggaattcaag-ccagcctagccaatatggtgaa---
i calJac3.chr6              I 8921 C 0
s aotNan1.NW_018505940v1     40717331 132 +  42888418 aaactcacagctaaagagtacatatctgggccaggcgcggtggctcacacctgtaatcccagcactttgggaggccaaggcaggcagatcaccaggtcaggaattcaagaccagcctagccaatatggtcaa---
i aotNan1.NW_018505940v1    I 4451 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       688678 8883 -   2910086 I
e otoGar3.GL873530             709631 1956 -  36342412 I
e chlSab2.chr29              21169540 2772 -  24206276 I
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=56837.000000
s hg38.chr15_KI270850v1_alt    409339 15 +    430880 ggccagtatgtctct
s panTro5.chr15              63561785 15 +  83230942 ggccagtatgtctct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80518834 15 +  99763055 ggccagtatgtctct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       118920 15 -   1709092 ggccagtatgtctct
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17280922 15 - 121039945 ggccagtatgcctct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60954883 15 + 169600520 gaccaatatgtctct
i rheMac8.chr7              I 5 C 0
s macFas5.chr7              108481611 15 - 171882078 gaccaatatgtctct
i macFas5.chr7              I 5 C 0
s macNem1.NW_012011945v1        98106 15 -   2311642 gaccaatatgtctct
i macNem1.NW_012011945v1    I 5 C 0
s cerAty1.NW_012002657v1        90203 15 -   1987038 gaccaatatgtctct
i cerAty1.NW_012002657v1    I 5 C 0
s manLeu1.NW_012106908v1       113500 15 -   1397330 gaccaatatgtctct
i manLeu1.NW_012106908v1    I 5 C 0
e aotNan1.NW_018505940v1     40717463  0 +  42888418 C
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22318338  0 + 158406734 C
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       688678 8883 -   2910086 I
e otoGar3.GL873530             709631 1956 -  36342412 I
e colAng1.NW_012117110v1       111230  9 -   1784207 I
e chlSab2.chr29              21169540 2772 -  24206276 I
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=3242371.000000
s hg38.chr15_KI270850v1_alt    409354 562 +    430880 actatgtctctactaa----aaatacaaaaattagccgggtgtggtggcatgtgcctgtagtcccagctacttgggaggctgagggagaagaatcccttgaacctgggaggcggaggatgcagggagccaagatcacaccactgcactgtagtctgggcgacagagcaagactctgtct-----caaaaag--aaaaaaaaag-----------tgtacatatctgtgattccatttatgtaaattcaaaatcaggtacaatttatctatgcaattaaaagtcagcatgaactgggtgtggtggctcatgcctataatcccaacactttcggaagccaaggcaaggaatttgcttaagcccaagagtccaagaccagcctggtcaacacagcaagattc----------tgtctctacaaaaactt--aaaaaaaaaaattagttgggcatggtggcgcatgattgcagtcccatctactcagaaggctgaggcaagaggatcacttgagcccaggagttcaaggct-----gcagtgagctatgatcatacaactgtgctgcagcctgggtgac----agtgataccccatctcagaaaaataa
s panTro5.chr15              63561800 561 +  83230942 actatgtctctactaa----aaatacaaaaattagccgggtgtggtggcgtgtgcctgtagtcccagctacttgggaggctgagggagaagaatcccttggacctgggaggcgaaggatgcagggagccaagatcacaccactgcactgtagtctgggcgacagagcaagactctgtct-----caaaaaa--aaaaaaaaag-----------tgtacatatctgtgattccatttatgtaaattcaaaatcaggtacaatttatgtatgcaattaaaagtcagcatgaactgggtgtggtggctcatgcctataatcccaacactttcggaagccaaggcaaggaatttgcttaagcccaagagtccaagaccagcctggtcaacacagcaagattc----------tgtctctacaaaaactt--aaaaaaaaaa-ttagttgggcatggtggcgcatgattgcagtcccatctactcagaaggctgaggcaagaggatcacttgagcccaggagttcaaggct-----gcagcgagctatgatcatacaactgtgctgcagcctgggtgac----agtgataccccatctcagaaaaataa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80518849 559 +  99763055 actatgtctctactaa----aaatacaaaaattagccgggtgtggtggcgtgtgcctgtagtcccagctacttgggaggctgagggagaagaatcccttggacctgggaggcgaaggatgcagggagccaagatcacaccactgcactgtagtctgggcgacagagcaagactctgtct-----caaaaa---aaaaaaaaag-----------tgtacatatctgtgattccatttatgtaaattcaaaatcaggtacaatttatgtatgcaattaaaagtcagcatgaactgggtgtggtggctcatgcctataatcccaacactttcggaagccaaggcaaggaatttgcttaagcccaagagtccaagaccagcctggtcaacacagcaagattc----------tgtctctacaaaaactt--aaaaaaaaa--ttagttgggcatggtggcgcatgattgcagtcccatctactcagaaggctgaggcaagaggatcacttgagcccaggagttcaaggct-----gcagcgagctatgatcatacaactgtgctgcagcctgggtgac----agtgataccccatctcagaaaaataa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       118935 564 -   1709092 actatgtccctactaa----aaatacaaaaattagccgggtgtggtggcgtgtgcctgtagtcccagctacttgggaggctgagggagaagaatcccttgaacccaggaggcggaggatgcaggaagccaagatcacaccactgcactgtagtctgggtgacagagcaagactctgtct-----caaaaagaaaaaaaaaaag-----------tgtacatatctgtgattccatttatgtaaattcaaaatcaggcacaatttatctatgcaattaaaagtcagcatgaactgcatgtggtggctcatgcctataatcccaacactttcggaagccaaggcaaggaatttgcttaagcccaagagtccaagaccagcctggtcaacgcagcaagattc----------tgtctctacaaaaactt--aaaaaaaaaaattagttgggcatggtgacgcatgattgcagtcccatctactcagaaggctgaggcaagagaatcacttgagcccaggagttcaaggct-----gcagtgagctatgatcatacaactgtgctgcagcctgggtgac----agtgataccccatctcagaaaaataa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17280937 564 - 121039945 actatgtctctactaa----gaatacaaaaattaactgggtgtggtagcgtgtgcctgtagtcccagctacttggggggctgagggagaagaatcccttgaacctgggaggcggaggatgcagggagccaagatcgcaccactgcactgcagcctgggcgacagagcaagactctgtct-----ccaaaaaa-aaaaaaaaag-----------ggtacatatctgtgattccatttatgtaaattcaaaatcaggcacaattgatctatgcaattaaaactcagcatgaactgggtgtggtggctcatgcctataatcccaacacttctggaagccaaggcaaggaatttgcttgagcccaagagttcaagaccagcctggtcaacacagcaagattc----------tgtctctacaaaaattt--aaaaaaaaa--ttagttgggcatggtggcacatgcttgcagtcccagctactcagaaggctgaggcaagaggatcacttgagcccaggagttcaaggct-----gcaatgagctatgatcatgcaactgttctgcagcctgggtgaca-agagtgataccccatctcagaaaaataa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60954898 565 + 169600520 actatgtctctactaa----aaatacaaaaattagccaggcatgatggcgctcgactgtagtgccagctactcaggaggctgaggcagaagaatcccttgaacccgggaagtggaggatacagggagccaaggtcacgccactgcactgcagcctgggcgacagagcaagactctgttt-------aaaa---aaaaaaaaaa-----------agtacaaatctgtgattccatttatgtaaattcaaaatcaggcaaaattgaactatgcaattaaaagtcagcatgaactgggtgtggtggctcacaactataatcccaacactttgggaagccagggcaaggaacttgcttgagcccaagagttcgagaccagactggtcaacacagcaagatcctacagaactttgtctctacaaaaactt---aaaaaaaaaattagttgggcatggtggtgcatgcttgcagtcccagctactcagaaggctgaggcaagaggatcacttgagcccaggagttcaaggctgcagcgcagtgagctatgatcgt--------gctgcagcctgggtgagacagagtgataccccatctcagaa----aa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108481626 568 - 171882078 actatgtctctactaa----aaatacaaaaattagccaggcatgatggcgctcgactgtagtgccagctactcaggaggctgaggcagaagaatcccttgaacccgggaagtggaggatacagggagccaaggtcacgccactgcactgcagcctgggtgacagagcaagactctgtct-------aaaa---aaaaaaaaaa-----------agtacaaatctgtgattccatttatgtaaattcaaaatcaggcaaaattgaactatgcaattaaaagtcagcatgaactgggtgtggtggctcacaactataatcccaacactttgggaagccagggcaaggaacttgcttgagcccaagagttcaagaccagactggtcaacacagcaagatcctacagaactttgtctctacaaaaacttaaaaaaaaaaaaattagttgggcatggtggtgcatgcttgcagtcccagctactcagaaggctgaggcaagaggatcacttgagcccaggagttcaaggctgcagcgcagtgagctatgatcgt--------gctgcagcctaggtgagacagagtgataccccatctcagaa----aa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        98121 567 -   2311642 actatgtctctactaa----aaatacaaaaattagctaggcatgatggcgctcgactgtagtgccagctactcaggaggctgaggcagaagaatcccttgaacccgggaagtggaggatacagggagccaaggtcacgccactgcactgcagcctgggcgacagagcaagactctgtct-------aaaa---aaaaaaaaaa-----------agtacaaatctgtgattacatttatgtaaattcaaaatcaggcaaaattgaactatgcaattaaaagtcagcatgaactgggtgtggtggctcacaactataatcccaacactttgggaagccagggcaaggaacttgcttgagcccaagagttcgagaccagactggtcaacacagcaagatcctacagaactttgtctctacaaaaactt-aaaaaaaaaaaattagttgggcatggtggtgcatgcttgcagtcccagctactcagaaggctgaggcaagaggatcacttgagcccaggagttcaaggctgcagcgcagtgagctatgatcgt--------gctgcagcctgggtgagacagagtgataccccatctcagaa----aa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        90218 556 -   1987038 actatgtctctactaa----aaatacaaaaattaaccaggcatgatggcgctcgactgtagtgccagctgcctc--aggctgaggcagaagaaccccttgaacccgggaagtggaggatacggggagccaaggtcacgccactgcactgcagcctgggcgacagagcaagactctgtct-----aaaaaa---aaaaaaaaaa-----------agtacaaatctgtgattccatttatgtaaattcaaaatcaggcaaaattgaactatgcaattaaaagtcagcatgaactgggtgtagtggctcacaactataatcccaacactttgggaagccagggcaaggaacttgcttgagcccaagagttcgagaccagactggtcaacacagcaagatcc----------tgtctctacaaaaactt--aaaaaaaaaaattagttgggcatggtggtgcatgcttgcagtcccagctactcagaaggctgaggcaagaggatcacttgagcccaggagttcaaggctgcagtgcagtgagctatgatcgt--------gctgcagcctgggtgagacagagtgataccccatctcagaa----aa
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012106908v1       113515 555 -   1397330 actatgtctctactaa----aaatacaaaaattaaccaggcatgatggcgctcgactgtagtgccagctgcctc--aggctgaggcagaagaatcccttgaacccaggaagtggaggatacagggagccaaggtcacgccactgcactgcagcctgggcgacagagcaagactctgtct-------aaaa---aaaaaaaaaa-----------agtacaaatctgtgattccatttatgtaaattcaaaatcaggcaaaattgaactatgcaattaaaagtcagcatgaactgggtgtagtggctcacaactataatcccaacactttgggaagccagggcaaggaacttgcttgagcccaagagttcgagaccagactggtcaacacagcaagatcc----------tgtctctacaaaaactt-aaaaaaaaaaaattagttgggcatggtggtgcatgcttgcagtcccagctactcagaaggctgaggcaagaggatcacttgagcccaggagttcaaggctgcagtgcagtgagctatgatcgt--------gctgcagcctgggtgagacagagtgataccccatctcagaa----aa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       111239 567 -   1784207 aatatgtctctactaa----aaatacaaaaattagccaggcatgatggtgcttgactgcagtcccagctactcgggaggctgaggcagaagaatcccttgaacccaggaagtggaggatacagtgagccaagatcgtgccactgcactgcagcctgggtgacagagcgagactctgtct-------aaaa---aaaattaaaa-----------agtacaaatctgtgattccatttatgtaaatttaaaatcaggcaaaattgatctatgcaattaaaagtcagcatgaactgggtgtagtggctcacaactataatcccaacactttgagaagccaaggcaaggaacttgcttgagcccaagagttcgagaccagactggtcaacacagcaagatcc----------tgtctctacaaaaactt---aaaaaaaaaattagttgggcatggtggtgcatacttgcagtcccagctactcagaaggctgaggcaagaggatcacttgagcccaggagttcaaggctgcagtgcagtgagctatgatcatgtcaatgggctgcagcctgggtgagacagagtgataccccatctcagaaaaataa
i colAng1.NW_012117110v1    I 9 C 0
s calJac3.chr6               22318338 567 + 158406734 accccatctctactaa----aaatacaaaaattagccaggcatggtggtatgcccctgtagtcccagctactcaggaggctcaggcaggagaactgcttgaacccaggaggcagaggttgcagtgtgttgagatagcatcactgcactctagtctggacaaca----gagactccatctcaaaacaaaac---aaaacaaaaaggtacttaaagagtacatatctgtgattccatttatgtaaattcaaaatcaggcaaaatttatctatacaattaaaagtcagcatgaactgggtgtgatggcttatgcctttaatcccaacactatgaaaagccaaggcagggaaa-tgcttgagcccaacagtttgagaccagcctggtcaacatagcaagattc----------tgtctctacaaaaacgt-------aaaaaattagttgggcatggtgtcacatgcttgcagtgccagctactcaggaggctgaggtgggaggattactt-agcccaggagttcatggct-----gcagtgagctatgatcatgtcactgtgctgcagcctgggtgac--agagtaacactccatatctcagaaa-aa
i calJac3.chr6              C 0 C 0
s aotNan1.NW_018505940v1     40717463 571 +  42888418 acctcatctctactaaaagtaaatacaaaaattagctaggcgtggtggtatgcccctatagtcccagctactcaggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagctgagatcacatcactgcactccagcctggaggacagagtgagactctgtct-----caaaaa---aaaaaaaaaaagtacataaagagtacatatctgtgattccatttatgtaaattcaaaatcaggcaaaatttatctatacaattaaaagtcagcatgaactgggtgtgatggcttatgcctctaatcccaacactatgggaaaccaaggcaagaaaa-tgcttgagcccaacagtttgagaccagccgggtcaacacagcaagattc----------tgtctctacaaaaacgt-------aaaaaattatttgggcatggtgtcacaggcttgcagtgccagctactcaggaggctgaggtgggagaattactt-agcccaggagttcaaggct-----gcagtgagctatgatcatgtcactgtgctgcagtctgggtgac--agagtaatactccatctcggaaaaataa
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       688678 8883 -   2910086 I
e otoGar3.GL873530             709631 1956 -  36342412 I
e chlSab2.chr29              21169540 2772 -  24206276 I
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=841255.000000
s hg38.chr15_KI270850v1_alt    409916 123 +    430880 aaatttagcataacaagtgccctttgtaaactagagactgaaaggactgcaaggggaattttggtgtattcttaatttttgcctctacatgtgactagttatacaagatgtgttcagtatata
s panTro5.chr15              63562361 123 +  83230942 aaagttagcataacaactgccctttgtaaactagagactgaaaggactgcaaggggaattttggtgtattcttaatttttgcctctacatgtgactagttatacaagatgtgttcagtatata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80519408 123 +  99763055 aaagttagcataacaactgccctttgtaaactagagactgaaaggactgcaaggggaattttggtgtattcttaatttttgcctctacatgtgactagttatacaagatgtgttcagtatata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       119499 123 -   1709092 aaagttagcataacaactgccctttgtaaattagagactgaaaggactgcaaggggaattttggtgtattcttaatttttgcctctacatgtgactacttatacaagatgtgttcagtatata
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17281501 123 - 121039945 aaagttagcataacaattgccctttgtaaattagagactgaaaggactgcaaggggaattttggtgtattcttaatttttgcctctacatgtgactagttacacaagatgtgttcagtagata
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60955463 123 + 169600520 aaagttagcagaacaattgccctttgtaaattagagactgaaaggattgcaaggggaattttagtgtattcttaatttttgcctctacatttgaggagttatacaagatgtgttcagtatata
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108482194 123 - 171882078 aaagttagcagaacaattgccctttgtaaattagagactgaaaggattgcaaggggaattttagtgtattcttaatttttgcctctacatgtgaggagttatacaagatgtgttcagtgtata
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        98688 123 -   2311642 aaagttagcagaacaattgccctttgtaaattagagactgaaaggattgcaaggggaattttagtgtattcttaatttttgcctctacatgtgaggagttatacaagatgtgttcagtgtata
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        90774 123 -   1987038 aaagttagcagaacaattgccctttgtaaattagagactgaaaggattgcaaggggaattttagtgtattcttaatttttgcctctacatgtgaggagttatacaagatgtgttcagtgtata
i cerAty1.NW_012002657v1    C 0 C 0
s manLeu1.NW_012106908v1       114070 123 -   1397330 aaagttagcagaacaattgccctttgtaaattagagactgaaaggattgcaaggggaattttagtgtattcttaatttttgcctctacatgtgaggagttatacaagatgtgttcagtgtata
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       111806 122 -   1784207 aaagttagcagaacaattgccc-ttgtaaattagaggctgaaaggattgcaatgggaattttggtgtattcttaatttttgcctctacatgtgagtagttatacaagatgtgttcagtgtata
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22318905 121 + 158406734 gaagtgagcataacgattcccctttgtgaatt--agactgaaagggttgcaaggtgacttccggtgtattgttaatttttgcctctatatgtgagcagttataaaagatatgttcagtatata
i calJac3.chr6              C 0 C 0
s aotNan1.NW_018505940v1     40718034 123 +  42888418 aaagtcagcataacaattcccctttgtgaattagagactgaaagagttgcaaggggacttctggtgtattgttaatttttgcctctatatgtgagtagttataaaagatgtgttcagtatata
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             711587 123 -  36342412 aaattatacacggtaattccctttcatgagttacagactgaacgggacacagagaggcatctagtttattatcagtttttgcctctatgtatgagcggttatacaacacgtgttcactacata
i otoGar3.GL873530          I 1956 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       688678 8883 -   2910086 I
e chlSab2.chr29              21169540 2772 -  24206276 I
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=165005.000000
s hg38.chr15_KI270850v1_alt    410039 24 +    430880 aaaattcagtgaat-agtacactca
s panTro5.chr15              63562484 24 +  83230942 aaaattcagtaaat-agtacactca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80519531 24 +  99763055 aaaattcagtgaat-agtacactca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       119622 24 -   1709092 aaaattcagtgaat-agtacactca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17281624 24 - 121039945 aaaattcagtgaat-agtacactca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60955586 25 + 169600520 aaaattcagtgaacaagtacacttg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108482317 25 - 171882078 aaaattcagtgaacaagtacacttg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        98811 25 -   2311642 aaaattcagtgaacaagcacacttg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        90897 25 -   1987038 aaaattcagtgaacaagtacacttg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21172312 25 -  24206276 aaaattcagtgaacaagtacacttg
i chlSab2.chr29             I 2772 C 0
s manLeu1.NW_012106908v1       114193 25 -   1397330 aaaattcagtgaacaagtacacttg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       111928 25 -   1784207 aaaattcagtgaacaagtacacttg
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22319026 24 + 158406734 aaaattcagtggag-aatacattca
i calJac3.chr6              C 0 C 0
s aotNan1.NW_018505940v1     40718157 24 +  42888418 aaaattcagtggac-agtacattca
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             711710 23 -  36342412 aaaattcgctgac--ggtacattca
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1904624 23143 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       688678 8883 -   2910086 I
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=798097.000000
s hg38.chr15_KI270850v1_alt    410063 89 +    430880 tacttt----tctgtaagtta-acttcaacaaCACAAGTTAAATCGTTGCCACTTAACTGTTA---CAGCCACACAGTAAGGTTCCATAAAAGTTTA
s panTro5.chr15              63562508 89 +  83230942 tacttt----tctgtaagtta-acttcaacaacacaagttaaaTCGTTGCCACTTAACTGTTA---CAGCCACACAGTAAGGTTCCATAAAAGTTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80519555 89 +  99763055 tacttt----tctgtaagtta-acttcaacaaCACAAGTTAAATCGTTGCCACTTAACTGTTA---CAGCCACACAGTAAGGTTCCATAAAAGTTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       119646 89 -   1709092 tacttt----tctgtaagtta-acttcaacaaCACAAGTTAAATCGTTGCCACTTAACTGTTA---CAGCCACACAGTAAGGTTCCATAAAAGTTTA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17281648 89 - 121039945 tacttt----tctgtaagtta-acttcaacaaCACAAGTTAAATCGTTATCACTTAACTGTTA---CAGCCACATAGTAAGGTTCCATAAAAGTTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60955611 89 + 169600520 tacttt----tctgtaagtta-acttcaataaCACAAGTTAAATCGTTATCACTTAACTGTTA---CAGCCACATAGTAAGGTTTCACAAAAGTTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108482342 89 - 171882078 tacttt----tctgtaagtta-acttcaataaCACAAGTTAAATCGTTATCACTTAACTGTTA---CAGCCACATAGTAAGGTTTCACAAAAGTTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        98836 89 -   2311642 tacttt----tctgtaagtta-acttcaataaCACAAGTTAAATCGTTATCACTTAACTGTTA---CAGCCACATAGTAAGGTTTCACAAAAGTTTA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        90922 89 -   1987038 tacttt----tctgtaagtta-acttcaataaCACAAGTTAAATCATTATCACTTAACTGTTA---CAGCCACATAGTAAGGTTTCACAAAAGTTTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21172337 89 -  24206276 tacttt----tctgtaagtta-acttcaataaCACAAGTTAAATCGTTATCACTTAACTGTTA---CAGCCACATAGTAAGGTTTCACAAAAGTTTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       114218 89 -   1397330 tacttt----tctgtaagtta-acttcaataacacaagttaaaTCATTATCACTTAACTGTTA---CAGCCACATAGTAAGGTTTCACAAAAGTTTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       111953 89 -   1784207 tacttt----tctgtaagtta-acgtcaataaCACAAGTTAAATCGTTATCACTTAACTGTTA---CAGCCACATAGTAAGGTTTCACAAAAGTTTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22319050 89 + 158406734 tacttt----tctgcaagtta-acttcagtaaCACAAGTTAAATTGTTATCACTTAACTGTTA---CAGCCATATAGTAAGGTTCCACAAGAGTTTA
i calJac3.chr6              C 0 C 0
s aotNan1.NW_018505940v1     40718181 89 +  42888418 tacttt----tctgtaagtta-acttcagtaaCACAAGTTAAATTGTTATCACTTAACTGTTA---CAGCCATATAGTAAGGTTCCACAAAAGTTTA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             711733 92 -  36342412 taccttattgcatgtaagtcatacttcaata--aaaagttAAATATTTATCACTTAACTGTTAAAGCAGCTACATATTCAGCTTTTACAAAA---TA
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH570731            1927767 80 +   3943991 TACTTT----TCAGTAGGTAT-GCTTTACTTTAATAAGTTAAATCATTATCAC---------A---TAGCCCTACATTAAGGTTCCATGAAAATTTA
i dasNov3.JH570731          I 23143 I 2
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       688678 8883 -   2910086 I
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=1414096.000000
s hg38.chr15_KI270850v1_alt    410152 162 +    430880 TTTTGTGGGAAACAAGACT--TCATGAGAGTAATTTCAATCATTTCCTGCAAGATGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGACGATACGGTTTATGATCCAGTACAATAAGAAGTGAAACCATCTCAGTCAAAAATT
s panTro5.chr15              63562597 162 +  83230942 TTTTGTGGGAAACAAGACT--TCATGAGAGTAATTTCAATCATTTCCTGCAAGATGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGACGATACGGTTTATGATCCAGTACAATAAGAAgtgaaaccatctcagtcaaaaatt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80519644 162 +  99763055 TTTTGTGGGAAACAAGACT--TCATGAGAGTAATTTCAATCATTTCCTGCAAGATGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGACGATACGGTTTATGATCCAGTACAATAAGAAgtgaaaccatctcagtcaaaaatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       119735 162 -   1709092 TTTTGTGGGAAACAAGACT--TCATGACAGTAATTTCAATCATTTCCTGCAAGATGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGACGATACGGTTTATGATCCAGTACAATAAGAAGTGAAACCATCTCAGTCAAAAATT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17281737 162 - 121039945 CTTTGTGGGAAACAAGACT--TCATGAGAGTAATTTCAATCATTTCCTGCAAGATGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGACGATACGGTTTATGATCCAATACAATAAGAAGTGAAACCATCTCAGTCAAAAATT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60955700 161 + 169600520 TTTTGTGGGAAACAAGACT--TCATGAGAGTAATTTCAATCATTTCCTGCAAGCTGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGATG-TACGGTTTATGATCCAGTACAATAAGGAgtgaaaccgtctcagtcaaaaatt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108482431 161 - 171882078 TTTTGTGGGAAACAAGACT--TCATGAGAGTAATTTCAATCATTTCCTGCAAGCTGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGATG-TACGGTTTATGATCCAGTACAATAAGGAgtgaaaccgtctcagtcaaaaatt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        98925 161 -   2311642 TTTTGTGGGAAACAAGACT--TCATGAGAGTAATTTCAACCATTTCCTGCAAGCTGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGATG-TACGGTTTATGATCCAGTACAATAAGGAgtgaaaccgtctcagtcaaaaatt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        91011 161 -   1987038 TTTTGTGGGAAACAAGACT--TCATGAGAGTAATTTCAATCATTTCCTGCAAGCTGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGATG-TACGGTTTATGACCCAGTACAATAGGGAGTGAAACCATCTCAGTCAAAAATT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21172426 161 -  24206276 TTTTGTGGGAAACAAGACT--TCATGAGAGTAATTTCAATCATTTCCTGCAAGCTGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGATG-TACAGTTTATGATCCAGTACAATAAGCAgtgaaaccgtctcagtcaaaaatt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       114307 161 -   1397330 TTTTGTGGGAAACAAGACT--TCATGAGAGTAATTTCAATCATTTCCTGCAAGCTGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGATG-TACGGTTTATGATCCAGTACAATAGGGAgtgaaaccgtctcagtcaaaaatt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       112042 164 -   1784207 TTTTGTGGGAAACAAGACTTCTCGTGAGGGTAATTTCAATCATTTCCTGCAAGCTGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGTGATGATACGGTTTATAATCCAGTACAATAAGAAgtgaaaccatctcagtcaaaaatt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22319139 162 + 158406734 TTTTGTGGAAAACAAGACT--TCATGAGAGTAACTTCAATCATCTTCTGCAAGCTGGGACTGAATGTATTAAACTTGGTTTTGGAATAGCTTTTCAGACAATTTAGGGATGATACAGTTTATCATCCAGTACAATAAGAAGTGAAACCATCTTAGTCAAAAATT
i calJac3.chr6              C 0 C 0
s aotNan1.NW_018505940v1     40718270 162 +  42888418 TCTTGTGGAAAACAAGACT--TCATGAGAGTAATTTCAATCATCTTCTGCAAGCTGGGACTGAATGTATTAAACTTTGTTTTGGAATAGCTTTTCAGACAATTTAGGGATGATACAGTTTATCATCCAGTACAATAAGAAGTGAAACCATCTTAGTCAAAAATT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             711825 161 -  36342412 -TTTATGGGAAACAAAATT--TTCTCAGAGTAATTTCCATCATCTCCTACTGTGTGAGACTGAATGTATTAAACTTTGTTTTGGAATAGTTTTTCAGATAATTTGGTAATTATACTATTTATGATCCTGCAGAATAAAAAAGGAAACCATCTCAGTCAAATATT
i otoGar3.GL873530          C 0 I 5
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1927847   2 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       688678 8883 -   2910086 I
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=819760.000000
s hg38.chr15_KI270850v1_alt    410314 104 +    430880 CAACATTAGtcatgccagtaatcccagcaacttgggaggctgaggcaggaggatggcttgaggccaggagtctgagaccagcctgggcaacacagtgacaccat
s panTro5.chr15              63562759 104 +  83230942 caacattagtcatgccagtaatcccagcaacttgggaggctgaggcaggaggatggcttgaggccaggagtctgagaccagcctgggcaacacagtgacaccat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80519806 103 +  99763055 caacattagtcatgccagtaatcccagcaactt-ggaggctgaggcaggaggatggcttgaggccaggagtctgagaccagcctgggcaacacagtgacaccAT
i panPan2.chr15             C 0 M 728
s gorGor5.CYUI01015556v1       119897 104 -   1709092 CAGCATTAGtcatgccagtaatcccagcaacttgggaggctgaggcaggaggatggcttgaggccaggagtctgagaccagcctgggcaacacagtgacaccat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17281899 104 - 121039945 CAACATTAGtcatgccagtaatcccagcaacttgggaggctgaggcaggaggactgcttgaggccaggagtctgagaccagcctgggcaacatagtgacaccat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60955861 104 + 169600520 caacattagtcatgtcagtaatcccagcaacttgggaggctgaggctggaggattgcttgaggccaggagtctgagactagcctgggcaacatagtgagaccat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108482592 104 - 171882078 caacattagtcatgtcagtaatcccagcaacttgggaggctgaggctggaggattgcttgaggccaggagtctgagactagcctgggcaacatagtgagaccat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        99086 104 -   2311642 caacattagtcatgtcagtaatcccagcaacttgggaggctgaggctggaggattgcttgaggccaggagtctgagactagcctgggcaacatagtgagaccat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        91172 104 -   1987038 CAACATTAGtcatgtcagtaatcccagcaacttgggaggctgaggctggaggattgcttgaggccaggagtctgagactagcctggacaacatagtgagaccat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21172587 104 -  24206276 caacattagtcatgtcagtaatcccagcaacttgggaggctgagactggaggattgcttgaggccaggagtctgagactagcctgggcaacatagtgaggccat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       114468 104 -   1397330 caacattagtcatgtcagtaatcccagcaacttgggaggctgaggctggaggattgcttgaggccaggagtctgagactagcctgggcaacatagtgagaccat
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       112206 104 -   1784207 caacattagtcatgtcagtaatcccagcaacttgggaggctgaggctggaggattgcttgaggccaggagtctgagactagcctgggcaacatagtgagaccat
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22319301 104 + 158406734 CAACATCAGtcatgccagtaatcccagcaatttgggaggctgaggcaggaggattgcttgaggacaggagtctgagagcagcctgggcaacataatgagacctt
i calJac3.chr6              C 0 C 0
s aotNan1.NW_018505940v1     40718432 104 +  42888418 CAACATCAGtcatgccagtaatcccagcaatttgggaggctgaggcaggaggattgctcgaggccaggagtctgagagcagcctgggcaacatagagagaccct
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1927847   2 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       688678 8883 -   2910086 I
e otoGar3.GL873530             711986   5 -  36342412 I
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=39262.000000
s hg38.chr15_KI270850v1_alt    410418 7 +    430880 gtctctt
s panTro5.chr15              63562863 7 +  83230942 gtctctt
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       120001 7 -   1709092 gtctctt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17282003 7 - 121039945 gtctctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60955965 7 + 169600520 ctttctt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108482696 7 - 171882078 gtttctt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        99190 7 -   2311642 gtttctt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        91276 7 -   1987038 gtttctt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21172691 7 -  24206276 gtttctt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       114572 7 -   1397330 gtttctt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       112310 7 -   1784207 gtttctt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22319405 7 + 158406734 gtccctt
i calJac3.chr6              C 0 C 0
s aotNan1.NW_018505940v1     40718536 7 +  42888418 gtctctc
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1927847 2 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       688678 8883 -   2910086 I
e otoGar3.GL873530             711986 5 -  36342412 I
e panPan2.chr15              80519909 728 +  99763055 M
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=42139.000000
s hg38.chr15_KI270850v1_alt    410425 14 +    430880 ----------a---------aaaaaaaaaaaaa
s panTro5.chr15              63562870 14 +  83230942 ----------a---------aaaaaaaaaaaaa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       120008 12 -   1709092 ---------------------aaaaaaaaaaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17282010 24 - 121039945 tcaaaaaaaaa---------aaaaaaaaaaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60955972 14 + 169600520 ----------c---------aaaaaaaaaaaaa
i rheMac8.chr7              C 0 I 3
s macFas5.chr7              108482703 14 - 171882078 ----------t---------aaaaagaaaaaaa
i macFas5.chr7              C 0 I 6
s macNem1.NW_012011945v1        99197 14 -   2311642 ----------t---------aaaaaaaaataaa
i macNem1.NW_012011945v1    C 0 I 73
s cerAty1.NW_012002657v1        91283 14 -   1987038 ----------c---------aaaaaaaaaaaaa
i cerAty1.NW_012002657v1    C 0 I 6
s chlSab2.chr29              21172698 14 -  24206276 ----------t---------aaaaaaaaaaaaa
i chlSab2.chr29             C 0 I 5
s manLeu1.NW_012106908v1       114579 23 -   1397330 ----------taaaaaagaaaaaaaaaaaaaAA
i manLeu1.NW_012106908v1    C 0 I 5
s colAng1.NW_012117110v1       112317 14 -   1784207 ----------t---------aaaaaaaaaaaaa
i colAng1.NW_012117110v1    C 0 I 2
e aotNan1.NW_018505940v1     40718543  0 +  42888418 C
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22319412  0 + 158406734 C
e dasNov3.JH570731            1927847  2 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       688678 8883 -   2910086 I
e otoGar3.GL873530             711986  5 -  36342412 I
e panPan2.chr15              80519909 728 +  99763055 M
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=57496.000000
s hg38.chr15_KI270850v1_alt    410439 34 +    430880 aATCCAggccaggtgcagtggctcacgcctgtaa
s panTro5.chr15              63562884 34 +  83230942 aATCCAggccaggtgcagtggcccacgcctgtaa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       120020 34 -   1709092 aaTCCAggccaggtgcagtggctcacgcctgtaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17282034 34 - 121039945 aaTCCAggccaggcacagtggctcacgcctgtaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60955989 20 + 169600520 aatccagggcgggtgCGGTG--------------
i rheMac8.chr7              I 3 C 0
s macFas5.chr7              108482723 20 - 171882078 aATCCAGGGCGGGTGCGGTG--------------
i macFas5.chr7              I 6 C 0
s cerAty1.NW_012002657v1        91303 20 -   1987038 AATCCAGGGCGAGTGCGGTG--------------
i cerAty1.NW_012002657v1    I 6 C 0
s chlSab2.chr29              21172717 20 -  24206276 aatccagggcgggtgCGGTG--------------
i chlSab2.chr29             I 5 C 0
s manLeu1.NW_012106908v1       114607 20 -   1397330 AATCCAGGGCGAGTGCGGTG--------------
i manLeu1.NW_012106908v1    I 5 C 0
s colAng1.NW_012117110v1       112333 20 -   1784207 aatccagggcgggtgAGGTG--------------
i colAng1.NW_012117110v1    I 2 C 0
e aotNan1.NW_018505940v1     40718543  0 +  42888418 C
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22319412  0 + 158406734 C
e dasNov3.JH570731            1927847  2 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       688678 8883 -   2910086 I
e otoGar3.GL873530             711986  5 -  36342412 I
e panPan2.chr15              80519909 728 +  99763055 M
e macNem1.NW_012011945v1        99211 73 -   2311642 I
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=1141549.000000
s hg38.chr15_KI270850v1_alt    410473 253 +    430880 tcccagcactttgggaggccgaggcaggcggatcacctgaggccaggagttcaagaccagcctgaccaatatggagaaaccccgtctctactaaa----aatacaaaattagccaggggtggtggcacatgcctg-taataccagctactcaggaggctgaggcaggagactcacttgaacccgggcagaggttgcggtgagccaagatcccgccattgcactccagcctgggaaacaagagtgaaactccatctc------------ag------
s panTro5.chr15              63562918 253 +  83230942 tcccagcactttgggaggccgaggcaggcggatcacctgaggccaggagttcaagaccagcctgaccaatatggagaaaccccgtctctactaaa----aatacaaaattagccaggggtggtggcacatgcctg-taataccagctactcaggaggctgaggcaggagactcacttgaacccgggcagaggttgcggtgagccaagatcccaccattgcactccagcctgggaaacaagagtgaaactccatctc------------ag------
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       120054 259 -   1709092 tcccagcactttgggaggccaaggcgggcggatcacctgaggccaggagttcaagaccagcctgaccaatatggagaaaccccgtctctactaaa----aatacaaaattagccgggggtggtggcacatgcctgttaataccagctactcaggaggctgaggtaggagactcacttgaacccgggcagaggttgcggtgagccaagatcctgccattgcactccagcctgggaaacaagagtgaaactccatctc------------aggaa-aa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17282068 251 - 121039945 tcacagcactttgggaggccgaggcgggcagatcacctgtgg---gatcctcaagaccagcctgaccaacatggagaaaccccgtctctactaaa----aatacaaaatgagccgggggtggtggcacatgcctg-taataccagctactcaggaggctgaggcaggagaatcagtggaacctgggcagaggttgcagtgagccaagatcccaccattgcactccagcctgggaaacaagagcgaaactccgtctc------------ag-----a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60956009 256 + 169600520 tcgcagcactttgggaggccaaggcgggcagatcacctgaggccaggagttcaagaccagcctgaccaacatggagaaaccctgtctctactaaaatataatacaaaattagccgggcatggtggcgcatgcctg-taatactagctactcaagagcctgaggcaggagaatcacttgaacccgggcagaggttgcagtgagccaagatcccgccattgcactccaatctgggcaacaagagccaaactcagtctc-------------------a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108482743 263 - 171882078 tcgcagcactttgggaggccaaggcgggcagatcacctgaggccaggagttcaagaccagcctgaccaacatggagaaaccctgtctctactaaaatataatacaaaattagccgggcatggtggcgcatgcctg-taatactagctactcaagagcctgaggcaggagaatcacttgaacccgggcagaggttgcagtgagccaagatcccgccattgcactccaacctgggcaacaagagccaaactcagtctc------------aaaaaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        99284 267 -   2311642 tcgcagcactttgggaggccaaggcgggcagatcacctgaggccaggagttcaagaccagtctgaccaacatggagaaaccctgtctctactaaaatataatacaaaattagccgggcatggtggcgcatgcctg-taatactagctactcaagagcctgaggcaggagaatcacttgaacccgggcagaggttgcagtgagccaagatcccgccattgcactccaacctgggcaacaagagccaaactcagtctc--------aaaaaaaaaaaa
i macNem1.NW_012011945v1    I 73 C 0
s cerAty1.NW_012002657v1        91323 275 -   1987038 tcacagcactttgggaggccaaggcgggcagatcacctgaggccaggagttcaagaccagcctgaccaacatggagaaaccctgtctctactaaaatataatacaaaattagccgagcatggtggcgcatgcctg-taatactagctactcaagagcctgaggcaggagaatcacttgaacctgggcagaggttgcagtgagccaagatcccgccattgcactctagcctgggcaacaagagccaaactcagtctcaaaaaaaaaaaaaaaaaaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21172737 253 -  24206276 tcccagcactttgggaggccaaggcgggcagatcacctgaggccaggagttcaagaccagcctgaccaacatggagaaaccctgtctctactaaa----aatacaaaattagacgggcatggtggcgcacgcctg-taatactagctactcaagagcctgaggcaggagaatcacttgaacccgggcagaggttgcagtgagccaagatcccgccattgcactccagcctgggcaacaagagccaaactcagtctc------------------aa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       114627 255 -   1397330 tcgcagcactttgggaggccaaggcgggcagatcacctgaggccaggagttcaagaccagcctgaccaacatggagaaaccctgtctctactaaaatataatacaaaattagccgggcatggtggcgcatgcctg-taatactagctactcaagagcctgaggcaggagaatcacttgaacctgggcagaggttgcagtgagccaagatcccgccattgcactccagcctgggcaacaagagccaaactcagtctc--------------------
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       112353 259 -   1784207 tcccagcactttgggaggccaaggcgggcagatcacctgaggccaggaagtcaagaccagcctgaccaacatggagaaaccctgtctctactaaa----aatataaaattagccgggcatggtggcgcatgcctg-taataccagctactcaggaacctgaggcaggaaaatcacttgaacccaggcagaggttgcagtgagccaagatcccgccattgcactccagcctgggcaacaagagccaaattcagtctc------------aaaaaaaa
i colAng1.NW_012117110v1    C 0 C 0
e aotNan1.NW_018505940v1     40718543   0 +  42888418 C
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22319412   0 + 158406734 C
e dasNov3.JH570731            1927847   2 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       688678 8883 -   2910086 I
e otoGar3.GL873530             711986   5 -  36342412 I
e panPan2.chr15              80519909 728 +  99763055 M
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=6006.000000
s hg38.chr15_KI270850v1_alt    410726 1 +    430880 a
s panTro5.chr15              63563171 1 +  83230942 a
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       120313 1 -   1709092 a
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17282319 1 - 121039945 a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60956265 1 + 169600520 a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108483006 1 - 171882078 a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        99551 1 -   2311642 a
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        91598 1 -   1987038 a
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21172990 1 -  24206276 a
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       114882 1 -   1397330 a
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       112612 1 -   1784207 a
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107610v1       697561 1 -   2910086 a
i cebCap1.NW_016107610v1    I 8883 C 0
e aotNan1.NW_018505940v1     40718543 0 +  42888418 C
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22319412 0 + 158406734 C
e dasNov3.JH570731            1927847 2 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e otoGar3.GL873530             711986 5 -  36342412 I
e panPan2.chr15              80519909 728 +  99763055 M
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=28392.000000
s hg38.chr15_KI270850v1_alt    410727 4 +    430880 aaaa
s panTro5.chr15              63563172 4 +  83230942 aaaa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       120314 4 -   1709092 aaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17282320 4 - 121039945 aaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60956266 4 + 169600520 aaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108483007 4 - 171882078 aaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        99552 4 -   2311642 aaaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        91599 4 -   1987038 aaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21172991 4 -  24206276 aaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       114883 4 -   1397330 aaaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       112613 4 -   1784207 aaaa
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22319412 4 + 158406734 aaaa
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107610v1       697562 4 -   2910086 aaaa
i cebCap1.NW_016107610v1    C 0 C 0
e aotNan1.NW_018505940v1     40718543 0 +  42888418 C
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1927847 2 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e otoGar3.GL873530             711986 5 -  36342412 I
e panPan2.chr15              80519909 728 +  99763055 M
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=472789.000000
s hg38.chr15_KI270850v1_alt    410731 62 +    430880 aaaaaaaaaaaTCTAACATCAGGCTACAACTATACAATTCTTTGGTCCTACATTAAAAGTCA
s panTro5.chr15              63563176 62 +  83230942 aaaaaaaaaaaTCTAACATCAGGCTACAACTATACAATTCTTTGGTCCTACATTAAAAGTCA
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       120318 62 -   1709092 aaaaaaaaaaaTCCAACATCAGGCTACAACTATACAATTCTTTGGTCCTACATTAAAAGTCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17282324 62 - 121039945 aaaaaaaaaaaTCTAACATTGGGCTACAACTATATAATTCTTTGGTCCTACATTAAAAGTCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60956270 62 + 169600520 aaaaaaaaaaTTCCAACATCGGGCTACGACTATACAATTCTTTGGTCCTACATTAAAAGTCT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108483011 62 - 171882078 aaaaaaaaaaTTCCAACATCGAGCTACAACTATACAATTCTTTGGTCCTACATTAAAAGTCT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        99556 62 -   2311642 aaaaaaaaaaaTCCAACATCGGGCTACGACTATACAATTCTTTGGTCCTACATTAAAAGTCT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        91603 62 -   1987038 aaaaaaaaaaaTCCAACATCGGGCTACGACTATACAATTCTTTGGTCCTACATTAGAAGTCT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21172995 62 -  24206276 aaaaaaaaaaaTCCAACATCGGGCTACGACTATACAATTCTTTGGTCCTACATTAAAAGTCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       114887 62 -   1397330 aaaaaaaaaaaTCCAACATCGGGCTACGACTATACAATTCTTTGGTCCTACATTAGAAGTCT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       112617 62 -   1784207 aaaaaaaaaaaTCCAACATCGGGCTATGACGATACAATTCTTTGGTCCTACATTAAAAGTCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22319416 62 + 158406734 aaaaaaaaaaaTCCACCATCAAGCTACAACTATACAATTCTTTGGTCCTACATTAAAAGTTA
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107610v1       697566 62 -   2910086 aaaaaaaaaaaTCCACCATCAGGCTACAACTATACAATTCTTTGGTCCTACATTAAAAGTTA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40718543 62 +  42888418 aaaaaaaaaaaTCCACCATCAGGCTACAACTATACAATTCTTTGGTCCTACATTAAAAGTTA
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1927847  2 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e otoGar3.GL873530             711986  5 -  36342412 I
e panPan2.chr15              80519909 728 +  99763055 M
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=1305852.000000
s hg38.chr15_KI270850v1_alt    410793 155 +    430880 GCAGTCTATTTAggtctgagagctggttacatggttgtgttcagtttgggaaagttggagctcttcgcctatgatacagcatgtactttcctgtatgtg-ta--ttatatttcagtttt----taaaaactgttaaataaaCATATCAGTGCTAAACCTTAC
s panTro5.chr15              63563238 155 +  83230942 GCAGtctatttaggtctgggagctggttacatggttgtgttcagtttgggaaagttggagctcttcgcctatgatacagcatgtactttcctgtatgtg-ta--ttatatttcagtttt----taaaaactgttaaataaaCATATCAGTGCTAAACCTTAC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       120380 155 -   1709092 GCAGtctatttaggtctgggagctggttacatggttgtgttcagtttgggaaagttggagctcttcgcctatgatacagcatgtactttcctgtatgtg-ta--ttatatttcagtttt----taaaaactgttaaataaaCATATCAGTGCTAAACCTTAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17282386 155 - 121039945 GCAGtctatttaggtctgggagctggttacatggttgtgttcagtttgggaaagttggagctctttgcctatgatacagcatgtaccttcctgtatgtg-ta--ttatatttcagtttt----taaaaaCTGTTAAATCAACATATCAGTCCTAAACCTTAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60956332 155 + 169600520 GCAAtctatttaggtctgggagctggttacatggttgtgttcattttgggaaagttggagctcttcacctatgatacagcatgtactttcctgtatgta-ta--ttatatttcagtttt----taaaaaCTGTTAAATCAACATATCAGTCCTAAACCTTAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108483073 155 - 171882078 GCAATCTATTTAggtctgggagctggttacatggttgtgttcattttgggaaagttggagctcttcacctatgatacagcatatactttcctgtatgta-ta--ttgtatttcagtttt----taaaaactgttaaaTCAACATATCAGTCCTAAACCTTAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        99618 155 -   2311642 GCAAtctatttaggtctgggagctggttacatggttgtgttcattttgggaaagttggagctcttcacctatgatacagcatgtactttcctgtatgta-ta--ttatatttcagtttt----taaaaaCTGTTAAATCAACATATCAGTCCTAAACCTTAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        91665 155 -   1987038 GCAATCTATTTAggtctgggagctggttacatggttgtgttcattttgggaaagttggagctcttcacctatgatacagcatgtactttcctgtatgta-ta--ttatatttcaGTTTT----TAAAAACTGTTAAATCAACATATCAGTCCTAAACCTTAC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21173057 155 -  24206276 GCAATCTATTTAggtctgggagctggttacatggttgtgttcattttgggaaagttggagctcttcacctatgatacagcatgtactttcctgtatgta-ta--ttatatttcCGTTTT----TAAAAACTATTAAATCAACATATCAGTCCTAAACCTTAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       114949 155 -   1397330 GCAAtctatttaggtctgggagctggttacatggttgtgttcattttgggaaagttggagctcttcacctatgatacagcatgtactttcctgtatgta-ta--ttatatttcagtttt----taaaaaCTGTTAAATCAACATATCAGTCCTAAACCTTAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       112679 155 -   1784207 GCAAtctatttaggtctgggagctggttacatggttgtgttcattttgggaaagttggagctcttcacctatgacacagcatgtactttcctatatgta-ta--ttttatttcagtttt----taaaaaCTTCTAAATTAACATATCAGCCCTAAACCTTAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22319478 154 + 158406734 GCAGTCTAATTAggtctgggagttggttacatgattgtgttcagtttgggaacattggagctcttcacatgtgatacagcatgtactttactgtatgtg-tg---tatatttcaGTTTT----TAAAAACTGTTAAATCAACATATCAGTTCTCTACCTTAC
i calJac3.chr6              C 0 C 0
s cebCap1.NW_016107610v1       697628 157 -   2910086 ACAGTCTAATTAggtctgggagttggttacatgattgtgttcagtttgggaaagttggagctcttcacatgtgatacagcatgtactttcctgtatatg-tgtattatatttcaatttt----taaaaaCTGTTAAATCAACATATCAGTTCTCTACCTTAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40718605 155 +  42888418 GCAGTCTAATTAggtctgggagttggttacatgattgtgttcaatttgggaaagttggagctcttcacatgtgatacagcatgtactttcctgtatgtg-ta--ttatatttcagtttt----taaaaaCTGTTAAATCAACGTATCAGTTCTCTACCTTAC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             711991 159 -  36342412 GTAGTCCATTTATatctgggagctggttacatgattacattcaatttaagaaaactggagctcttcacctatgatacagtatgtattttcctatatgtatta--ttatacttcagatataaaCAAAAAACCCTTTAA-CAGCCTACCAGTCCTAAACCTTAC
i otoGar3.GL873530          I 5 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1927847   2 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e panPan2.chr15              80519909 728 +  99763055 M
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=1963350.000000
s hg38.chr15_KI270850v1_alt    410948 217 +    430880 TTAGGACTGCTTTGGCTAGTCAATTCC-TTTCTAAACCTCCAAGCTATTTTAACTGATTATTGAGAAATGGCATCTCAGTGAATTAATATGAAAC--TGCTCCTCCAATCATTGCCTCCATCC----TAAATATTAAGTCTCCCTACCCATATAGCAGTTAAGACATCCCTTAATGATGTTTCACCACTTTTCACATCTTTACAGACACCGTTACTAACAACTC
s panTro5.chr15              63563393 215 +  83230942 TTAGGACTGCTTTGGCTAGTCAATTCC-TTTCTAAACCTCCAAGCTATTTTAACTAAttattgagaaatggcatctcagtgaattaatatgaaac--tgctcctccaatcattgcctccatcc----taaatatt--gtctccctgcccatatagcagttaagacatcccttaatgatgtttcaccacttttcacatctttacagacaccgttactaacaactc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80520637 217 +  99763055 TTAGGACTGCTTTGGCTAGTCAATTCC-TTTCTAAACCTCCAAGCTATTTTAACTAATTATTGAGAAATGGCATCTCAGTGAATTAATATGAAAC--TGCTCCTCCAATCATTGCCTCCATCC----TAAATATTAAGTCTCCCTGCCCATATAGCAGTTAAGACATCCCTTAATGATGTTTCACCACTTTTCACATCTTTACAGACACCGTTACTAACAACTC
i panPan2.chr15             M 728 C 0
s gorGor5.CYUI01015556v1       120535 217 -   1709092 TTAGGACTGCTTTGGCTAGTCAATTCC-TTTCTAAACCTCCAAGCTATTTtaactgattattgagaaatggcatctcagtgagttaatatgaaac--tgctcctccaatcattgcctccatcc----taaatattaagtctccctatccatatagcagttaagacatcccttaatgatgtttcaccacttttcacatctttacagacaccgttactaacaactc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17282541 215 - 121039945 TTAGGACTGCTTTGGCTAATCAATTCT-CTTCTAAACCTCCAAGCTATTTTAACTGGTTATTGAGAAATGGCATCTCGGTGAGTTAATATCAAAC--TGTTCCTCTAATCATTGCCTCCATCC----TAAATATT--GTCTCCCTACCCATATAGCAGTTAAGACATCCCTTAATGATGTTTCACCACTTTTCACATCTTTACAGACACTGTTACTAACAACTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60956487 215 + 169600520 TTAGGACTGCTTTGACTAATCAATTCC-TTTCTAAACCTCCAAGCTATTTtaactggttattgagaaatggcatctcggtgagttaacatgaaac--tgttcctccaaccattgcctccagcc----taaatatt--gtctccctacccatatagcagttaagatgtcccttaatgatgtttcaccacttttcacatctttacagacactgttagtaaaaactc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108483228 215 - 171882078 TTAGGACTGCTTTGACTAATCAATTCC-TTTCTAAACCTCCAAGCTATTTtaactggttattgagaaatggcatctcggtgagttaacatgaaac--tgttcctccaatcattgcctccagcc----taaatatt--gtctccctacccatatagcagttaagatgtcccttaatgatgtttcaccacttttcacatctttacagacactgttagtaaaaactc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        99773 215 -   2311642 TTAGGACTGCTTTGACTAATTAATTCC-TTTCTAAACCTCCAAGCTATTTtaactggttattgagaaatggcatctcggtgagttaacatgaaac--tgttcctccaatcattgcctccagcc----taaatact--gtctccctacccatatagcagttaagatgtcccttaatgatgtttcaccacttttcacatctttacagacactgttagtaaaaactc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        91820 215 -   1987038 TTAGGACTGCTTTGACTAATCAATTCC-TTTCTAAACCTCCAAGCTATTTtaactggttattgagaaatggcttctcggtgagttaacatgaaac--tgttcctccaatcattgcctccagcc----taaatatt--gtctccctacccatatagcagttaagatgtcccttaatgatgtttcaccacttttcacatctttacagacactgttagtaaaaactc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21173212 215 -  24206276 TTAGGACTGCTTTGACTAATCAATTCC-TTTCTAAACCTCCAAGCTATTTtaactggttattgagaaatggcatctcggtgagttaatatgaaac--tgttcctccaatcattgcctccagcc----taaatatt--gtctccctacctatataacagttaagatgtcccttaatgatgtttcaccacttttcacatctttacagacactgttagtaaaaactc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       115104 215 -   1397330 TTAGGACTGCTTTGACTAATCAATTCC-TTTCTAAACCTCCAAGCTATTTtaactggttattgagaaatggcttctcggtgagttaacatgaaac--tgttcctccaatcattgcctccagcc----taaatatt--gtctccctacccatatagcagttaagatgtcccttaatgatgtttcaccacttttcacatctttacagacactgttagtaaaaactc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       112834 217 -   1784207 TTAGGACTGCTTTGACTAATCAATTCC-TTTCTAAACCTCCAAGCTATTTtaactggttattgagaaatggcatcttggtgagttaacatgaaac--tgttcctccaatcattgcctccagcc----taaatattaagtcttcctacccatatagcagttaagatgtcccttaatgatgtttcaccacttttcacatctttacagacactgttagtaaaaactc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22319632 217 + 158406734 TTTGAACTGCTTTGGCTAATCAATTCC-TTTCTAAGCCTCCAAGCTGTTTTAACTGGT---TGAGAAATGGCATCTCAGTGAGTTAACATTAAAT--TTTTCCTTCAATCATCGTCACCAGGCATATTAAATATTAAGTCTCCCTACCCACATAGCAG-TAAGATGTCCCTTAATGATGTTTCACCACTTTTCAGATCTTTACAGACACTGTTACTAAAAACTC
i calJac3.chr6              C 0 I 301
s cebCap1.NW_016107610v1       697785 221 -   2910086 TTTGAACTGCTTTGGCTAATCGATTCC-TTTCTAAGCATCCAAGCTATTTtaactggttactgagaaatggcatctcagtgagttaacattaaat--ttttcctccaatcattgttgccaggcatattaaatattaagtctccctacctacatagcagttaagatgtcccttaatgatgtttcaccacttttcagatctttacatacactgttactaaaaactc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40718760 211 +  42888418 TTTGAACTGCTTTGGCTAATCAATTCC-TTTCT--------AAGCTATTTtaactggttattgagaaatggcatctcagtgagttaacattaaat--ttttcctccaatcattgtcgccaggcatattaaatattaagtctccctacccacacagcagttaagatgtcccttaatgatgtttcaccacttttcagatcttcgcagaca--gttactaaaaactc
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             712150 214 -  36342412 TTTGAACCACTTTGGCTAATCAAGTCCTTTTCTGGACCtccaagctattctaactgctta--gagacgtctcatttcagcgaattaacctgaaacttttttcctgccctcgctgcCCCCTGTCATACTACACATTAAATCCCCCTACCCACATAGTAGTTAAGGTGCCCCTTAATGATGTCTTACCACTT-----ACCTTTACAGACACTGTTACTAAGTG---
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1927847   2 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=474576.000000
s hg38.chr15_KI270850v1_alt    411165  64 +    430880 AACACATTAATGCTTAAATCACATGTCC----------------------------------------------------------------------------------------ATTTGCAGCCCATTTTCTCCATTCCTCACAGATTCC
s panTro5.chr15              63563608  64 +  83230942 aatgcattaatgcttaaatcacatgtcc----------------------------------------------------------------------------------------atttgcagcccattttctccattcctcacagattcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80520854  64 +  99763055 AATGCATTAATGCTTAAATCACATGTCC----------------------------------------------------------------------------------------ATTTGCAGCCCATTTTCTCCATTCCTCACAGATTCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       120752  64 -   1709092 aacgcattaatgcttaaatcacacgtcc----------------------------------------------------------------------------------------atctgcagcccattttctccattcctcacaggttcc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17282756  64 - 121039945 GATGCATTAATGCTTAAATCACATGTCC----------------------------------------------------------------------------------------ATTTGCAGCCCATTTTCTCCATTCCTCACAGATTCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60956702  62 + 169600520 GACGCATTAATGCTTAAATCACATGTCC----------------------------------------------------------------------------------------ATTTGCAGCCCATTTTCTCCATTCCT--CAGATTCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108483443  62 - 171882078 gacgcattaatgcttaaatcacatgtcc----------------------------------------------------------------------------------------atttgcagcccattttctccattcct--cagattcc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1        99988  62 -   2311642 gacgcattaatgcttaaatcatatgtcc----------------------------------------------------------------------------------------atttgcagcccattttctccattcct--cagattcc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        92035  62 -   1987038 gacgcattaatgcttaaatcacatgtcc----------------------------------------------------------------------------------------atttgcagcccattttctccattcct--cagattcc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21173427  62 -  24206276 gacgcattaatgcttaaatcacatgtcc----------------------------------------------------------------------------------------atttgcagcccattttctccattcct--cagattcc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       115319  62 -   1397330 gacgcattaatgcttaaatcacacgtcc----------------------------------------------------------------------------------------atttgcagcccattttctccattcct--cagattcc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       113051  64 -   1784207 aacgcgttaatgcttaaataacatgtcc----------------------------------------------------------------------------------------atttgcagcccattttctccattcctcacagattcc
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107610v1       698006  64 -   2910086 cattcattaatggttaaatcacatgtcc----------------------------------------------------------------------------------------atttgcagctcattttctgcattcctcacatattcc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40718971  64 +  42888418 cattcattaatgcttaaatcacatgtcc----------------------------------------------------------------------------------------atttacagctcattttctccattcctcacagattcc
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             712364 147 -  36342412 -----ATTAATGCTTCAATCACATGTCCATCtacagcagtggttctcaacctgtgggttgcaacccacaggaactatattaaaggaccacagcattaggaaggttgagaacaactaatctaCAGCTTATTTCCTCCATCTTCCACAGAATTC
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e calJac3.chr6               22319849 301 + 158406734 I
e dasNov3.JH570731            1927847   2 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=1946929.000000
s hg38.chr15_KI270850v1_alt    411229 208 +    430880 AAAAGGTCTATGGCTTAAAGGACTAGGGAATGTGGAGAGGGCCCTCTAGGTGGCAGACATCCCTGTC---------------AtctccactagacagttgttggggtaggaaatccagctctggcctgaccttccagccccaccctagctcctaccaccC--ATCATGCAACAAGGGccttcttggtggggtactagcccaaaagctcaggcctttgcaaaaccc
s panTro5.chr15              63563672 210 +  83230942 aaaaggtctatggcttaaaggactagggaatgtggagagggcCCTCTAGGTGGCAGACATCCCTGTC---------------AtctccactagacagttgttggggtaggaaatccagctctggcctgaccttccagccccaccctagctcctaccaccCCCATCATGCAACAAGGgccttcttggtggggtactagcccaaaagctcaggcctttgcaaaaccc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80520918 210 +  99763055 AAAAGGTCTATGGCTTAAAGGACTAGGGAATGTGGAGAGGGCCCTCTAGGTGGCAGACATCCCTGTC---------------AtctccactagacagttgttggggtaggaaatccagctctggcctgaccttccagccccaccctagctcctaccaccCCCATCATGCAACAAGGgccttcttggtggggtactagcccaaaagctcaggcctttgcaaaaccc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       120816 208 -   1709092 aaaaggtctatggcttaaaggactagggaatgtggagagggcCCTCTAGGTGGCAGACATCCCTGTC---------------AtctccactagacagttgttggggtaggaaatccagctctggcctgaccttccagccccaccctagctcctaccaccC--ATCATGCAACAAGGgccttcttcgtggggtactagcccaaaagctcaggcctttgcaaaaccc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17282820 205 - 121039945 AAAAGGTCTATGGCTTAAAGGACTAGGGAATGTGGAGACGGCCCTTTAGGTGGCAGGCATCCCTGTC---------------Atctccactagaca---gttggggtaggaaatccagctctggcctgaccttccagccccaccctaactcctgccaccC--ATCATGCAACAAGGgccttcttggtggggtactagcccaaaagctcaggcctttgcaaaaccc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60956764 208 + 169600520 AAAAGGTCTATGGCTTAAAGGAGTAGGGAATGTGGAGAGGGCCCTCTAGATGGCAGACATCCCTCTC---------------Atctccactggacagttgttggggtaagaaatccagctctggccttaccttccagccccaccctagctcccaccaccc--accatgcaacaagggccttcttggtggggtaccagcccaaaagctcaggcctttgcaaaaccc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108483505 208 - 171882078 aaaaggtctatggcttaaaggagtagggaatgtggagagggcCCTCTAGACGGCAGACATCCCTCTC---------------AtctccactggacagttgttggggtaggaaatccagctctggccttaccttccagccccaccctagctccCACCACCC--ACCATGCAACAAGGgccttcttggtggggtaccagcccaaaagctcaggcctttgcaaaaccc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       100050 208 -   2311642 aaaaggtctatggcttaaaggagtagggaatgtggagagggcCCTCTAGATGGCAGACATCCCTCTC---------------ATCTCCACTGGACAGTTGTTGGGGTAGGAAATCCAGCTCTGGCCTTACCTTCCAGCCCCACCCTAGCTCCCACCACCC--ACCATGCAACAAGGgccttcttggtggggtaccagcccaaaagctcaggcctttgcaaaaccc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        92097 208 -   1987038 aaaaggtctatggcttaaaggaccagggaatgtggagagggcCCTCTAGATGGCAGACATCCCTCTC---------------ATCTCCACTGGACAGTTGTTGGGGTAGGAAATCCAGCTCTGGCCTTACCTTCCAGCCCCACCCTAACTCCCACCACCC--ACCATGCAACAAGGgccttcttggtggggtaccagcccaaaagctcaggcctttgcaaaaccc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21173489 207 -  24206276 aaaaggtctatggcttaaaggactagggaatgtggagagggcCCTCTAGATGGCAGACATCCCTCTC---------------ATCTCCACTGGACAGTTGTTGGGGTAGGAAATCCAGCTC-GGCCTTACCTTTCAGCCCCACCCTAGCTCCCACCACCC--ACCATGCAACAAGGgccttcttggtggggtaccagcccaaaagctcaggcctttgcaaaaccc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       115381 208 -   1397330 aaaaggtctatggcttaaaggactagggaatgtggagagggcCCTCTAGATGGCAGACATCCCTCTC---------------Atctccactggacagttgttggggtaggaaatccagctctggccttaccttccagccccaccctagctcccaccaccc--accatgcaacaagggccttcttggtggggtaccagcccaaaagctcaggcctttgcaaaaccc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       113115 208 -   1784207 aaaaggtctatggcttaaaggactagggaatgtcgagagggcCCTCTAGATGGCAGACATCCCTCTC---------------ATCTCCAATGGACAGTTGTTGGGGTAGGAAATCCAGCTCTGGCCTTACCTTCCAGCCCCACCCTAGCTCCCACCACCC--ATCATGCAACAAGGgccttcttggtggggtaccagcccaaaagctcaggcctttgcaaaaccc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22320150 207 + 158406734 aaaaTATCTACGGCTTAAA-GACTAGGGAATGTGGAAAGGGCCCTCTAGGTGGCAGGCAACCCCCTC---------------ATTTCCACTAGACAGTTGTTGGGGGAGGAAATCCAGCTCAGGCCTGACCTTCCAGCCTTACTCTAGCTCCCACCACCG--ATCACGCAACAAGGGCCTTCTTGGTTGGGTACCAGCCCAAAAGCTCAGGACTTTGCAAAACCT
i calJac3.chr6              I 301 I 36
s cebCap1.NW_016107610v1       698070 208 -   2910086 aaaagatctatggcttaaaggactagggaatgcagaaagggcCCTCTAGGTGGCAGGCATCCCTCTC---------------ATCTCCACTAGACAGTTGTTGGGGGAGGAAATCCAGCTCTGGCCTGACCTCCCAGCCCTACTCTAGCTCCCACCATCC--ATCACGCAACAAGGGCCTTCTTGGTTGGGTACTAGCCCAAAAGCTCAGGCCTTTGCAAAACCT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40719035 208 +  42888418 aaaagatctatggcttaaaggactagggaatgcagaaagggcCCTCTAGGTGGCAGGCATCCCTCTC---------------ATCTCCATTAGACAGTTGTTGGGGGAGGAAATCCAGCTCTGGCCTGACCTTCCAGCCCTACTCTAGCTCCCACCACCC--ATCACGCAACAATGGCCTTCTTGGTTGGGTACTAGCCCAAAAGCTCAGGCCTTTGCAAAACCT
i aotNan1.NW_018505940v1    C 0 I 16
s otoGar3.GL873530             712511 167 -  36342412 AACGAATGTATGGCCT-----------------TGAAAGTGCTGTCTAGGTGGCAGGCATCCCTCTCATGAAGAGTGTGTATATCACCGCTG--CAGTTCCTTGGGTAGGACACCCAACTCTGGCCTGACCTTCCAAGCC--------------CCATCC--CTCAC---ACAAGGACCTCCTTGATGGGGTACTAGC-------------------CAAAACC-
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1927847   2 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e saiBol1.JH378108           50544129 3129 +  54856640 I

a score=132951.000000
s hg38.chr15_KI270850v1_alt    411437 14 +    430880 tcttaaaccacagc
s panTro5.chr15              63563882 14 +  83230942 tcttaaaccacagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80521128 14 +  99763055 tcttaaaccacagc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       121024 14 -   1709092 tcttaaaccacagc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17283025 14 - 121039945 tcttaaaccacagc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60956972 14 + 169600520 tcttaaaccacagc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108483713 14 - 171882078 tcttaaaccacagc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       100258 14 -   2311642 tcttaaaccacagc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        92305 14 -   1987038 tcttaaaccacagc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21173696 14 -  24206276 tcttaaaccacagc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       115589 14 -   1397330 tcttaaaccacagc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       113323 14 -   1784207 tcttaaaccacagc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22320393 14 + 158406734 TTTAAGACCACAAC
i calJac3.chr6              I 36 C 0
s saiBol1.JH378108           50547258 14 +  54856640 TTTAAGACCACAGC
i saiBol1.JH378108          I 3129 C 0
s cebCap1.NW_016107610v1       698278 14 -   2910086 GAGCAAGTCACAAC
i cebCap1.NW_016107610v1    C 0 I 12
s aotNan1.NW_018505940v1     40719259 14 +  42888418 TCTAAGACCACAGC
i aotNan1.NW_018505940v1    I 16 C 0
s otoGar3.GL873530             712678 14 -  36342412 CCTCAAACCAGAGG
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1927847  2 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=66444.000000
s hg38.chr15_KI270850v1_alt    411451 8 +    430880 aagtcata
s panTro5.chr15              63563896 8 +  83230942 aagtcata
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80521142 8 +  99763055 aagtcata
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       121038 8 -   1709092 aagtcaca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17283039 8 - 121039945 aagtcaca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60956986 8 + 169600520 aaatcaca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108483727 8 - 171882078 aaatcaca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       100272 8 -   2311642 aaatcaca
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        92319 8 -   1987038 aaatcaca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21173710 8 -  24206276 aaatcaca
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       115603 8 -   1397330 aaatcaca
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       113337 8 -   1784207 aagtcaca
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22320407 8 + 158406734 AAGTCACA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50547272 8 +  54856640 AAGTCACA
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40719273 7 +  42888418 AAGTCAC-
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             712692 8 -  36342412 AAGTAACA
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1927847 2 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e cebCap1.NW_016107610v1       698292 12 -   2910086 I

a score=615144.000000
s hg38.chr15_KI270850v1_alt    411459 65 +    430880 actttcttgtatataaacggggaattcagat-gctccagcta----ctctttccctgccccgccacatct
s panTro5.chr15              63563904 65 +  83230942 actttcttgtatacaaacggggaattcagat-gctccaggta----ctctttccccgccccgccacatct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80521150 65 +  99763055 actttcttgtatacaaacggggaattcagat-gctccaggta----ctctttccccgccccgccacatct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       121046 67 -   1709092 actttcttgtatataaacggggaattcagat-gctccagctac--tctctttccccaccccgccacatct
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17283047 67 - 121039945 actttcttgtatataaacgggcaattcagat-gctccagctac--tctctttccctgccccgccacatct
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60956994 66 + 169600520 actttcttg-atataaacagagaattcagat-gctccagctac--tctctttccccaccccaccacatct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108483735 66 - 171882078 actttcttg-atataaacagagaattcagat-gctccagctac--tctctttccccaccccaccacatct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       100280 66 -   2311642 actttcttg-atataaacagagaattcagat-gctccagctac--tctctttccccaccccaccacatct
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        92327 66 -   1987038 actttcttg-atataaacagagaattcagat-gctccagctac--tctctttccccaccccaccacatct
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21173718 67 -  24206276 actttcttgtatacaaacagagaattcagat-gctccagctac--tctctttccccaccccaccacatct
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       115611 66 -   1397330 actttcttg-atataaacagagaattcagat-gctccagctac--tctctttccccacccgaccacatct
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       113345 67 -   1784207 gctttcttgtatataaacagagaattcagat-gctccagctac--tctctttccccaccccaccacatct
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22320415 69 + 158406734 ACTTCCTTGTACATAAACAGGGAATTCACAt-gctccagctactgtctttttccctgccctaccatctct
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50547280 69 +  54856640 ACTTCCTTGTATATAAACAAGGAATTTAGAt-gctccagctactgtctttttccctgccctaccgtatct
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       698304 69 -   2910086 ACTTCCTTGTATATAAACAgggaattcagat-gctctagctactgtctttttccctgccctaccacatct
i cebCap1.NW_016107610v1    I 12 C 0
s aotNan1.NW_018505940v1     40719280 68 +  42888418 -TTTCCTTGTATATAAACAgggaattcagat-gctccagctactgtctttttccctgccctaccacatct
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             712700 67 -  36342412 ACTTT-GTGCATCAAGGGGGTGAATTCAAACAGTTCCAGCTAC--TCTCTGTCCCTGTCCCATCCCATCT
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1927847  2 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=2586133.000000
s hg38.chr15_KI270850v1_alt    411524 278 +    430880 ctctccagagtcgcactctatcaccca-ggctggaatacag-agtgcaacctcggctcactgcaacctccgactccccggttcaagcaattctcctgcctcagcctccc---------ggactacagg--cacgcaccatcatgcccg-gttaatttttctatttttaatagagacaaggtttcgccatgttggtcaggctggtctcaaactcctgacctcaagtgatctgcccacctcggcctcccaaagtgctgagattactacaggcatgagtcactgcacccagccca
s panTro5.chr15              63563969 278 +  83230942 ctctccagagtcgcactctatcaccca-ggctggaatacag-agtgcaacctcggctcactgcaacctccaactcccgggttcaagcaattctcctgcctcagcctccc---------agactacagg--cacgcaccatcatgcccg-gttaatttttctatttttaatagagacaaggtttcgccatgttggtcaggctggtctcaaactcctgacctcaagtgatctgcccacctcggcctcccaaagtgctgagattactacaggcatgagtcactgcacccagccca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80521215 278 +  99763055 ctctccagagtcgcactctatcaccca-ggctggaatacag-agtgcaacctcggctcactgcaacctccaactcccgggttcaagcaattctcctgcctcagcctccc---------ggactacagg--cacgcaccatcatgcccg-gttaatttttctatttttaatagagacaaggtttcgccatgttggtcaggctggtctcaaactcctgacctcaagtgatctgcccacctcggcctcccaaagtgctgagattactacaggcatgagtcactgcacccagccca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       121113 278 -   1709092 ctctccagagtcgcactctatcaccca-ggctggaatacag-agtgcgacctcggctcactgcaacctccgactccagggttcaagcaattctcctgcctcagcctccc---------ggactacagg--cacgcaccatcatgcccg-gttaatttttctatttttaatagagacaaagtttcgccatgttggtcaggctggtctcgaactcctgacctcaagtgatctgcccacctcggcctcccaaagtgctgagattactacaggcatgagtcactgcacccagccca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17283114 278 - 121039945 ctctccagagtcgcactctatcaccca-ggctggaatacag-agtgcgaccttggctcactgcaacctccgactcccgggttcaagcaattctcctgcctcagcctccc---------ggactacagg--cacgcaccatcatgcccg-gttaattttggtatttttaatagagacaaggtttcgccatgttggtcaggctggtctcaaattcctgacctcaagtgatctgcccgcctcggcctcccaaagtgctgagattactacaagcatgagtcactgcacccagccca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60957060 270 + 169600520 ctctccagagtctcactctatcaccca-ggctggagtgcagtggtgcgaccttggctcactgtaacctccaactcccaggttcaagaaattctcctgcctcagcctccc---------ggactacagg--cacacaccatcatgccca-gttaatctttgtatttttagtagagacaaagtttcaccatgttggtcaggctagtctcgaactcctgacctcaagtgatctgccc------gcctcccaaagtgctgggat---tacaggcatgagtcactgcacccagccca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108483801 270 - 171882078 ctctccagagtctcactctatcaccca-ggctggagtgcagtggtgcgaccttggctcactgtaacctccaactcccaggttcaagaaattctcctgcctcagcctccc---------ggactacagg--cacacaccatcatgccca-gttaatctttgtatttttagtagagacaaagtttcaccatgttggtcaggctagtctcgaactcctgacctcaagtgatctgccc------gcctcccaaagtgctgggat---tacaggcatgagtcactgcacccagccca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       100346 270 -   2311642 ctctccagagtctcactctatcaccca-ggctggagtgcagtggtgcgaccttggctcactgtaacctccaactcccaggttcaagaaattctcctgcctcagcctccc---------ggactacagg--cacacaccatcatgccca-gttaatctttgtatttttagtagagacaaagtttcaccatgttggtcaggctagtcccgaactcctgacctcaagtgatctgccc------gcctcccaaagtgctgggat---tacaggcatgagtcactgcacccagcccc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        92393 270 -   1987038 ctctccagagtctcactctatcaccca-ggctggagtgcagtggtgcgaccttggctcactgcaacctccaactcccaggttcaagaaattctcctgcctcagcctccc---------ggactacagg--cacacaccatcatgccca-gttaatctttgtatttttagtagagacaaagtttcaccatgttggtcaggctagtctcgaactcctgacctcaagtgatctgccc------gcctcccaaagtgctgggat---tacaggcgtgagtcactgcacccagccca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21173785 269 -  24206276 ctctccagagtctcactctattaccca-ggctggagtgcagtggtgagaccttggctcactgcaacctccaactcccaggttcaagaaattctcctgcctcagcctccc---------gcactatagg--cacacaccatcatgccca-gttaatctttgtatttttagtagagacaaagtttcaccatgttggtcaggctagtctcgaactcctgacctcaagtgatctgccc------gcctcccaaagtgctgggat---tacaggcatgagtc-ctgcacccagccca
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       115677 270 -   1397330 ctctccagagtctcactctatcaccca-ggctggagtgcagtggtgcgaccttggctcactgcaacctccaactcccagattcaagaaattctcctgcctgagcctccc---------ggactacagg--cacacaccatcatgccca-gctaatctttgtatttttagtagagacaaagtttcaccatgttggtcaggctagtctcgaactcctgacctcaagtgatctgccc------gcctcccaaagtgctgggat---tacaggcatgagtcactgcacccagccca
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       113412 270 -   1784207 ctctccagagtctcactctatcaccca-ggctggagtgcagtggtgcgaccttggctcactgcaacctccaactcctgggttcaagaaattctcctgcctcagcctccc---------ggactacagg--cacataccatcatgccca-gttaatctttgtatttttagtagagacaaagtttcaccatgttggtcaggctagtctcgaactcctgacctcaagtgatctgccc------acctcccaaagtgctgggat---tacaggtatgagtcactgcacccagccca
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22320484 286 + 158406734 ctctccagagtctcactctgtcaccgagggctggagtgcggtggtgagatctcagctcactgtgaccttcaatccctgggttcaagcaattctcctgcctcagcttcccgagtagctgggactacagg--cacacaccaccatgccca-gttaatttttgcatttttaatagagacaaggtttcattatgttggtcaggctggtcttgaactcctgacctaaagtgatccacctgcctcagcctcccaaagtactgggat---tacatgtgtgagccactgtacccagcccg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50547349 288 +  54856640 ctctgcagagtctcactctgtcaccca-ggctggaatgaggtggcgagatctcagctcactgcgacctccaactcctgggttcaagcaattctcctgcctcagtctcccaagtagctgggactacagg--cacacaccaccatgccca-gttaatttttgcatttttaatacagacaaggtttcaccatgttggtcaggctggtcttgaactcctgacctaaagtgatccacctgcctcggcctcccaaagtgctgggattactacaggtgtgaaccactgtacccagctca
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       698373 283 -   2910086 ctctccagaatctcactctgtcaccga-ggctggagtgtggtggtgagatctcagctcactgcgacctccaactcctgggttcaagcaattctcctgtctcagcctcccgagtagttgggactacagg--cacacaccaccatgccca-gttaatttttgcatttttaat--agacaaggtttcaccatgttggtcaggctggtcttgaactcctgacctaaagtgatccacctgcctcagcctcccaaagtgctgggat---tacaggtgtgagccactgtacccagccca
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40719348 287 +  42888418 ctctccagagtctcactctgtcactga-ggctggagtgcagtggtaagatctcagctcactgcaacctccaactcctgggttcaagcaattctcctgcctcagcctcccaagtaactgggactacaggcacacacactaccatgcccaggttaatttttgcatttttaatagagacaaggtttcaccatgttggtcaggctggtcttgaactcctgacctaaagtgatccacctgcctcggtctcccaaagtgctgggat---tacaggtgtgagccactgtacccagccc-
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1927847   2 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e otoGar3.GL873530             712767   0 -  36342412 C

a score=4724089.000000
s hg38.chr15_KI270850v1_alt    411802 459 +    430880 catctc----ttcttcattaatttctattcagtcagggatagacagcaagtcagctgtctaaccaggggttcaaccttgtcttc-tttcttggaagcattctccatctatacaaatacttctcttggaagaccctcttgcttggcttaaatgacaaagccacatcctaccccaccctcctccacggac-ggggacggaatcacttcaaatgctacccccctccttatgtgatcctctt-tataagccagggaagggttgagctaatgtttgtggtaggagggacagctctgtgaccttttgg-taagccctggcgggaggtatctggtcccacctcttagggattctcattacaccacaggtcatttaacagctctttagtctcagctttgggccctaatggccaattctggagcaacaga-aaaaaaat--aatctactcaacatccagttaAGAC--TAAAGTAATTTTA
s panTro5.chr15              63564247 457 +  83230942 catctc----ttcttcattaatttctattcagtcagggacagacagcaagtcagttgtctaaccaggggttcaaccttgtcttc-tttcttggaagcattctccatctatacaaatacttctcttggaagaccctcttgcttggcttaaatgacaaagccacatcctaccccaacctcctccacggac-ggggatggaatcacttcaaatgctaccccc-tccttatgtgatcctctt-tataagccagggaagggttgagctaatgtttgtggtaggagggacagctctgtgaccttttgg-taagccctggcgggaggtatctcgtctcacctcttagggattctcattacaccacaggtcatttaacagctctttagtctcagctttgggccctaatggccaattctggagcaacaga-aaaaaaa---aatctactcaacatccagttaAGAC--TAAAGTAATTTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80521493 458 +  99763055 catctc----ttcttcattaatttctattcagtcagggacagacagcaagtcagttgtctaaccaggggttcaaccttgtcttc-tttcttggaagcattctccatctatacaaatacttctcttggaagaccctcttgcttggcttaaatgacaaagccacatcctaccccaacctcctccacggac-ggggatggaatcacttcaaatgctaccccc-tccttatgtgatcctctt-tataagccagggaagggttgagctaatgtttgtggtaggagggacagctctgtgaccttttgg-taagccctggcgggaggtatctcgtctcacctcttagggattctcattacaccacaggtcatttaacagctctttagtctcagctttgggccctaatggccaattctggagcaacaga-aaaaaaat--aatctactcaacatccagttaAGAC--TAAAGTAATTTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       121391 458 -   1709092 catctc----ttcttcactaatttctattcagtcagggacagacagcaagtcagctgtctaaccaggggttcaaccttgtcttc-tttcttggaagcattctccatctatacaaatacttctcttggaagaccctcttgcttggcttaaatgacaaagccacatcctaccccaccctcctccacggac-ggggacggaatcacttcaaatgctaccccc-tccttatgtgatcctctt-tataagccagggaagggttgagctaatgtttgtggtaggagggacagctctatgaccttttgg-taagccctggcgggaggtatctggtcccacctcttagggattctcattacaccacaggtcacttaacagctctttattctcagctttgggccctaatggccaattctggagcaacaga-aaaaaaat--aatctactcaacatccagttaAGAC--TAAAGTAATTTTA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17283392 458 - 121039945 catctc----ttcttcattaacctctattcagtcagggacagacagcaagtcagctgcctaaccaggggttcaaccttgtcttc-tttcttggaagcattctccatctatacaaatacttctcttggaagaccctcttgcttggcttgaatgacaaagccacatcctaccccaccctcctccacggac-agggagggaatcacttcaaatgctaccccc-tccttatgtgatcctctt-tataagccagggaagggttgagctaatgtttgtggtaggagggacagctctgtaaccttttgg-taatccctggcaggaggtatctggtcccacctcttagggattctcattataccacaggtcacttaacagctcttcattctcagctttgggccctaatggccaattctggggcaacaga-aaaaaaat--aatctactcaacatccagttaAGAC--TAAAGCAATTTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60957330 463 + 169600520 catctcttaatttctcattaatctctattcagtcagggacagacagcaagtcagttgtccaaccaggggttcaaccttgtcttc-tttcttggaagcattctccatctacacaaatatttctcttggaagaccctcttgcttggcttgaacaacaaagccacatcctatcccaccctcctccacagac--gggagggaatcacttcaaatgctaccccc-tccttatgtgatcctctt-tataggccagggaagggttgagctaatgtttgtggtaggagggacagctctgtgacctttagg-taagccctggcaggaggtatctggtcccacctcttagggattctcattacaccacagctcacttaacagctctttattctcagctttgggccctaatggccaattctggggcaacaga-aaaaaaaaataatctactcaacctccagttaAGAC--TAAAGTAATTTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108484071 463 - 171882078 catctcttaatttctcattaatctctattcagtcagggacagacagcaagtcagttgtccaaccaggggttcaaccttgtcttc-tttcttggaagcattctccatctacacaaatatttctcttggaagaccctcttgcttggcttgaacaacacagccacatcctatcccacccttctccacagac--gggagggaatcacttcaaatgctaccccc-tccttatgtgatcctctt-tataggccagggaagggttgagctaatgtttgtggtaggagggacagctctgtgacctttagg-taagccctggcaggaggtatctggtcccacctcttagggattctcattacaccacagctcacttaacagctctttattctcagctttgggccctaatggccaattctggggcaacaga-aaaaaaaaaaaatctactcaacctccagttaAGAC--TAAAGTAATTTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       100616 463 -   2311642 catctcttaatttctcattaatctctattcagtcagggacagacagcaagtcagttgtccaaccaggggttcaaccttgtcttc-tttcttggaagcattctccatctacacaaatatttctcttggaagaccctcttgcttggcttgaacaacaaagccacatcctatcccaccctcctccacagac--gggagggaatcacttcaaatgctaccccc-tccttatgtgatcctctt-tataggccagggaagggttgagctaatgtttgtggtaggagggacagctctgtgacctttagg-taagccctggcaggaggtatctggtcccacctcttagggattctcattacaccacagctcacttaacagctctttattctcagctttgggccctaatggccaattctggggcaacaga-aaaaaaaaataatctactcaacctccagttaAGAC--TAAAGTAATTTTA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        92663 462 -   1987038 catctcttaatttctcattaatctctattcagtcagggacagacagcaagtcagttgtccaaccaggggttcaaccttgtcttc-tttcttggaagcattctccatctacacaaatatttctcttggaagaccctcttgcttggcttgaacaacaaagccacatcctatcccaccctcctccacagac--gggagggaatcacttcaaatgctaccccc-tccttatgtgatcctctt-tataggccagggaagggttgagctaatgtttgtggtaggagggacagctctgtgacctttagg-taagccctggaaggaggtatctggtcccacctcttagggattctcattacaccacagctcacttaacagctctttattctcagctttgggccctaatggccaattctggggcaataga-aaaaAAAAA-AATATACTCAACCTCCAGTTAAGAC--TAAAGTAATTTTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21174054 463 -  24206276 catctcttaatttctcattaatctctattcagtcagggacagacagcaagtcagttgtccaaccaggggttcaaccttgtcttc-tttcttggaagcatcctccgtctacacaagtatttctcttggaagaccctcttgcttggcttgaacaacaaagccacatcctatcccaccctcctccacagac--gggagggaatcacttcaaatgctaccccc-tccttatgtgatcctctt-tataggccagggaagggttgagctaatgtttgtggtaggagggacagctctgtgaccttttgg-taagccctggcaggaggtatctggtcccacctcttagggattctcattacaccacagctcacttaacagctctttattctcagctttgggccctaatggccaattctggggcaataga-aaaaAAAAATAATCTACTCAACCTACAGTTAAGAC--TAAAGTAATTTTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       115947 462 -   1397330 catctcttaatttctcattaatctctattcagtcagggacagacagcaagtcagttgtccaaccaggggttcaaccttgtcttc-tttcttggaagcattctccatctacacaaatatttctcttggaagaccctcttgcttggcttgaacaacaaagccacatcctatcccaccctcctccacagac--gggagggaatcacttcaaatgctaccccc-tccttatgtgatcctctt-tataggccagggaagggttgagctaatgtttgtggtaggagggacagctctgtgacctttagg-taagccctggcaggaggtatctggtcccacctcttagggattctcattacaccacagctcacttaacagctctttattctcagctttgggccctaatggccaattctggggcaataga-aaaaaaaaa-aatctactcaacctccagttaAGAC--TAAAGTAATTTTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       113682 462 -   1784207 catctcttaatttctcattattctctattcagtcggggacagacagcaagtcagttgtctaaccaggggttcaaccttgtcttc-tttcttggaagcattctccatctatacaaatatttctcttggaagaccctcttgcttggcttgaacaacaaagccacatcctatcccaccctcctccacagac--gggagggaatcacttcaaatgctaccccc-tccttatgtgatcctctt-tataggccagggaaggcttgagctaacgtttgtggtaggagggacagctctgtgaccttttgg-taagccctggcaggaggtatgtggtcccaactcttagggattctcattacaccacaggtcacttaacagctctttattctcagctttgggccctaatggccaattctggggcaataga-aaaaaaaat-aatctactcaacctccagttaAGAC--TAAAGTAATTTTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22320770 461 + 158406734 tatctcttaatttctcattaatctccattcagtcagggaaagacagcaagtctgctgtctaatcagatgctcaaccttgtcttctttttttggaatcactctccatctatacaaatacttctcttggaagaccctcttgcctggcttgaacaacaaagccacattctaccccaccctcctccactaac-gtggaggtaaccacttcaaatactaccc---tccttatgtgatcctctt-tatagaccagggaagggctgagctaatgtttgtggtagcagggacagctctgtgaccttttgg-taagccctggcaggaggtatctggtcctacctcttagggattctcattataccacaggtcacttaagagttcttcattctcagctttgggccctaatggccaattttcgggtaacaga-aacaaa----aatctactcaacattcagttaAGACTATAAAGTAATTTTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50547637 459 +  54856640 tatctcttaatttctcattaatctccattcagtcagggaaatacagcaagtctgctgtctaatcacatgctcaaccttgtcttctttttttggaagcactctccatctatacaaatacttctcttggaagaccctcttgcctggcttgaacaacaaagccgcattctaccccaccctcctccactaac-gtggaggtaatcatttcaaatactaccc---tccttaagtgatcctctt-tatagactagggaagggctgagctaatgctggtggtagcagggacagctctgtgaccttttgg-taagccctggcaggaggtatctggtcccacctcttagggattctcattatcccacaggtcacttacgagctcttcattctcagctttgggccctaatggccaattctcaggcaacaga-aacaaa----aatctactcaacattcagttaAGAC--TGAAATAATTTTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       698656 454 -   2910086 tatctcttaatttctcattaatctccattcagtcagggaaagacagcaagtgtgctgtctaatcacatgctcaaccttgtcttc-ttttttggaagcactctccatctatacatatacttctcttggaagaccctcttgcctggtttgaacaacaaagccgcattctaccccaccctcctccactaac-atggaagtaatcacttcaaatactaccc---tccttatgtgatcctctt-tatagaccagggaagggctgagctaatgttggtggtagcagggacagtactgtgaccctttg-----gccctggcaggaggtatctgatcccacctcttagagattctcattataccacaggtcacttaagagctcttcattctcagctttgggccctaatggccaattctcgggcaacaga-aacaaa----aatctactcaacattcagttaAGAC--TAAAGTAATTTTA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40719635 459 +  42888418 tatctcttaatttctcattaatctccattcagtcagggaaagacagcaagtttgctgtctaatcagatgctcaaccttgtcttc-ttttttggaagcactctccatctatacaaatacttctcttggaagaccctcttgcctggcttgaacaacaaagccgcattctaccccatcctcctccactaac-gtagaggtaatcacttcaaatattaccc---tccttatgtgatcctctt-tatagaccagggaagggctgagttaatgtttgtggtagcagggacggctctgtgaccttttgg-taagccctggcagaaggtatccggtcccacctcttagggattctcattgtaccacaggtcacttaagagctcttcattctcagctttgggccctaatggccaattctcgggcaacagataaaaaa----aatctactcaacattcagttaAGAC--TAAAGTAATTTTA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             712767 394 -  36342412 CACCTCT------------------------GTCAGGGACAGATAG--AGTCAGC-------ACAGGGGCTCCACTCTGCCTT--TTTCTTAGAAGCAGCTTCCATCTACACAAATGCTTATCTTGGAAGACACGCCCCTGCTGTCTGAAAGA-AAAGCTGCTTCCCACTCCACCCTCCTCCATGAAGAGGAGAAGGAATCTCTTCAAGTGCTAACT---CCCCTATGTGGTCTTCCCATACAAACCAGGGAAGGACTGAGATAATGTCTATGGTAGCAAGG-CAAC----TGAGCTTTTGGTTAAGTCCTGA-GGGAGGTAATTAAACCCATCTCTTAAGGACTGTCATTATAACACAGGTCACTTTACCCATTTTTATTCTCAGCTTTGAGTCCTA--------------------AGA-T---------AATCTATTCAACTCCCAGTTAC-AG--TGAAATAATTTTA
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1927847   2 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=1361140.000000
s hg38.chr15_KI270850v1_alt    412261 123 +    430880 ATTCTCTTC-AAAGCCTA-TTTCAAATGCTGCTTTAACCAGAAGTGTT-TCCTAGTTCTCAAACCAAACC----AACCTCTTC-----CTGACCCTATCACAGCACTTTTCCAATGATGCTTTA-------TCA-ACTGGGTT
s panTro5.chr15              63564704 123 +  83230942 ATTCTCTTC-AAAGCCTA-TTTCAAATGCTGCTTTAACCAGAAGTATT-TCCTAGGTCTCAAACCAAACC----AACCTCTTC-----CTGACCCTATCACAGCACTTTTCCAATGATGCTTTA-------TCA-ACTGGGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80521951 123 +  99763055 ATTCTCTTC-AAAGCCTA-TTTCAAATGCTGCTTTAACCAGAAGTATT-TCCTAGGTCTCAAACCAAACC----AACCTCTTC-----CTGACCCTATCACAGCACTTTTCCAATGATGCTTTA-------TCA-ACTGGGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       121849 123 -   1709092 ATTCTCTTC-AAAGCCTA-TTTCAAATGCTGCTTTAACCAGAAGTGTT-TCCTAGTTCTCAAACCAAACC----AACCTCTCC-----CTGACCCTATCACAGCACTTTTCCAATGATGCTTTA-------TCA-ACTGGGTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17283850 123 - 121039945 ATTCTCTTC-AAAGCCTA-TTTCAAACGCTGCTTTAACCAGAAGTGTT-TCCTAGTTCTCAAACCAAACC----AACCTCTCC-----CTGACCCTATCACAGCACTTTTCCAATGATGCTTTA-------TCA-ACTGGGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60957793 126 + 169600520 ATTCTCTTC-AAAGCCTA-TTTCAAATGCTGCTTTGACCAGAAGTGTT-TCCTAGTTCTC-AACTAAACCTGATAGGGTCTCC-----CTGACCCTATCACAGCACTTTTCCAATGATGTTTTA-------CCA-ACTGGGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108484534 126 - 171882078 ATTCTCTTC-AAAGCCTA-TTTCAAATGCTGCTTTGACCAGAAGTGTT-TCCTAGTTCTC-AACTAAACCTGATAGGGTCTCC-----CTGACCCTATCACAGCACTTTTCCAATGATGTTTTA-------CCA-ACTGGGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       101079 122 -   2311642 ATTCTCTTC-AAAGCCTA-TTTCAAATGCTGCTTTGACCAGAAGTGTT-TCCTAGTTCTC-AACTAAACC----AATCTCTCC-----CTGACCCTATCACAGCACTTTTCCAATGATGTTTTA-------CCA-ACTGGGTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        93125 122 -   1987038 ATTCTcttc-aaagccta-tttcaaatgctgctttgaccagaagtgtt-tcctagttctc-aactaaacc----aatctctcc-----ctGACCCTATCACAGCACTTTTCCAATGATGTTTTA-------CCA-ACTGGGTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21174517 122 -  24206276 ATTCTCTTC-AAAGCCTA-TTTCAAATGCTGCTTTGACCAGAAGTGTT-TCTTAGTTCTC-AACTAAACC----AATCTCTCC-----CTGACCCTATCACAGCACTTTTCCAATGATGTTTTA-------CCA-ACTGGGTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       116409 122 -   1397330 ATTCTCTTC-AAAGCCTA-TTTCAAATGCTGCTTTGACCAGAAGTGTT-TCCTAGTTCTC-AACTAAACC----AGTCTCTCC-----CTGACCCTATCACAGCACTTTTCCAATGATGTTTTA-------CCA-ACTGGGTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       114144 122 -   1784207 ATTCTCTTC-AAAGCCTA-TTTCAAATGCTGCTTTGACCAGAAGTGTT-TCCTAGTTCTC-AACTAAACC----AACCTCTCC-----CTGACCCTATCACAGCACTTTTCCAATGATGTGTTA-------TCA-ACTGGGTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22321231 123 + 158406734 ATTCTTTTC-GAAGCCTA-TTTCAAATGCTCCCTTAACCAGAAGGGTT-TCCTAGTTTCCTAACCAACGT----AACCTCTCC-----CTGACCCTGTCACAGCACTTTTCCAATGATGCTTTA-------TCA-CCTGGGTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50548096 123 +  54856640 ACTCTTTTC-GAAGCCTA-TTTCAAATGCTGCCTTAACCAGAAGTGCT-TCCTAGTTTCCTAACAAAAGC----AACCTCTCC-----CTGACCCTGTCACAGCACTTTTCCAATGATGCTTTA-------TCA-CCTGGGTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       699110 123 -   2910086 ATTCTTTTG-TAAGCCTA-TTTCAAATGCTGCCTTAACCAGAAGTGTT-TCCTAGTTTCCTAACCAAAGC----AACCTCTCC-----CTGACCCTGTCACAGCACTTTTCCAATGATGCTTTA-------TCA-CCTGGGTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40720094 122 +  42888418 ATTCTTTTC-GAAGCCTA-TTTCAAATGCTGCCTTAACCAGAGG-GTT-TCCTAGTTTCCTAACCAAAGC----AACCTCTCC-----CTGACCCTGTCACAGCACTTTTCCAATGATGCTTTA-------TCA-CCTGGGTT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             713161 126 -  36342412 ATTCTCTTTAAAAGTCTA-TTTCAAATGCTGCTTCACGCAGCAGTGTTCCCCTAGTTCCCTAACCAAAGC----AACCTCCCC-----CAGATCCTATCATAGCACTTCTCCAATAATGCCTTA-------TCATATTAACTT
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH570731            1927849 135 +   3943991 ATTCTCTTC-AAAGTCGATTTTCAAACCTTGCTTCATCCAAAAGCACT-TCCTAATTTCCTAACCAATGT----GACTTCTCCTTCCTTTGATCCTGTCACAACACTTTT-CAATAATGTCTCATTATAAGTCA-ACTGAGTT
i dasNov3.JH570731          I 2 I 251
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=1097327.000000
s hg38.chr15_KI270850v1_alt    412384 118 +    430880 ATGCAT------GCAACTAGCAATG------------TG-AAACACTGTGTTAGGAAACACACCATTTGAAA----ATTTATTACAAAATGTTTGTTTTAGAAGAACTAGTGGGGAAAAGCA----TACAGAAAAAAATTACCCA
s panTro5.chr15              63564827 118 +  83230942 ATGCAT------GCAACTAGCAATG------------TG-AAACACTGTGTTAGGAAACACACCATTTGAAA----ATTTATTACAAAATGTTTGTTTTAGAAGAACTAGTGGGGAAAAGCA----TACAGAAAAAAACTACCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80522074 118 +  99763055 ATGCAT------GCAACTAGCAATG------------TG-AAACACTGTGTTAGGAAACACACCATTTGAAA----ATTTATTACAAAATGTTTGTTTTAGAAGAACTAGTGGGGAAAAGCA----TACAGAAAAAAACTACCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       121972 118 -   1709092 ACGCAT------GCAACTAGCAATG------------TG-AAACACTGTGTTAGGAAACACACCATTTGAAA----ATTTATTACAAAATGTTTGTTTTAGAAGAACTAGTGGGGAAAAGCA----TACAGAAAAAAATTACCCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17283973 119 - 121039945 ATGCAT------GCAACTAGCAATG------------TGAAAACACTGTGTTAGGAAACACACCATTTGAAA----ATGTATTACAAAACATTTGTTTTAGAAGAACTAGTGAGAAAAAGTA----TACAGAAAAAAATTACCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60957919 118 + 169600520 ATGCAT------GCAACTAGCAATG------------TG-AAACACTGTGTTAGGATATACGCCATTTGAAA----ATTTATTATAAAATGTTTGTTTTAGAAGAACTAGTGGGGAAAAGTA----TACAGAAAAAAATTACCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108484660 118 - 171882078 ATGCAT------GCAACTAACAATG------------TG-AAACACTGTGTTAGGATATACGCCATTTGAAA----ATTTATTATAAAATGTTTGTTTTAGAAGAACTAGTGGGGAAAAGTA----TACAGAAAAAAATTACCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       101201 118 -   2311642 ATGCAT------GCAACTAGCAATG------------TG-AAACACTGTGTTAGGATATACGCCATTTGAAA----ATTTATTATAAAATGTTTGTTTTAGAAGAACTAGTGGGGAAAAGTA----TACAGAAAAAAATTACCCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        93247 118 -   1987038 ATGCAT------GCAACTAGTAATG------------TG-AAACACTGTGTTAGGATATACGCCATTTGAAA----ATTTATTATAAAATGTTTGTTTTAGAAGAACTAGTGGGGAAAAGTA----TACAGAAAAAAATTACCCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21174639 118 -  24206276 ATGCAT------GTAACTAGCAATG------------TG-AAACACTGTGTTAGGATATACGCCATTTGAAA----ATTTATTATAAAATGTTTGTTTTAGAAGAACTAGTGGGGAAAAGTA----TACAGAAAAAAATTACCCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       116531 118 -   1397330 ATGCAT------GCAACTAGCAATG------------TG-AAACACTGTGTTAGGATATACGCCATTTGAAA----ATTTATTATAAAATGTTTGTTTTAGAAGAACTAGTGGGGAAAAGTA----TACAGAAAAAAATTACCCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       114266 117 -   1784207 ATGCAT------GCAACTAGCAATG------------TG-AAACACTGTGTTAGGATATACGCCATTTGAAA----ATTTATTATAAAATGTTTGTTTTAGAAGAACTAGTGGGG-AAAGTC----TACAGAAAAAAATTACCCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22321354 105 + 158406734 ATGCAA------GCAACTAGCACTG------------TG-AAACACTTTG------------AAATTTGAAA----TTTTATTATAAAATGTTTTTTACGGAAGAACTAATGGGGAAAAGTA----TACAG-AAAAAATTACCCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50548219  96 +  54856640 ATGCAT------GCAACTAGCACTG------------TG-AAACAC-------------------TTTGAAA----ATTTATTATAAAATGTTTGTTAT---AGAACTAGTGGGGAAAAGTA----TACAGAAAAAAATTACTCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       699233 106 -   2910086 ATGCAT------GCAACTAGCACTG------------TG-AAACACTTTG------------AAATTTGAAA----ATTTATTATAAAATGTTTGTTATAGAAGAACTAGTAGGGAAAAGTA----TACCGAAAAAAATTACTCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40720216 106 +  42888418 ATGCAT------GCAACTAGCACTG------------TG-AAACACTTTG------------AAATTTGAAA----ATTTATTATAAAATGTTTGTTATAGAAGAACTAGTGGGGAAAAGTA----TATAGAAAAAAATTACCCA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             713287 121 -  36342412 GTACATCTGTTAACTATTCTCAATGCCTACCATGCAATG-AAATTTTTTTGCAGATAATATACAGCCTTACAAGTGACTTATATTCAAACATTAGTT---------CAAATGAAAAAAAGTA----C----------ATCTGTTg
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH570731            1928235 115 +   3943991 ATGTTT------GCAAC-AGCAGTG------------TG-AAAAACTGTAGTAGGATACA--CCATTTTAAA----AATTATTACAAAATGT---GTTAAGACGACCTACTGGGGAAAAGCAAAAGCACAG-AAAAAATTACCTA
i dasNov3.JH570731          I 251 I 361
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=1476664.000000
s hg38.chr15_KI270850v1_alt    412502 140 +    430880 gccaggtgcggtggctcacgcctgtaatcccagcagtttgggaggccaaggcaggtggatcacttgaggtcaggagttcaagaccagcctggccaatgtggtgaaacccccatctctactaa---tacaaaaattagccaggc
s panTro5.chr15              63564945 140 +  83230942 gccaggtgcggtggctcatgcctgtaatcccagcagtttgggaggccaaggcaggtggatcacttgaggtcaggagttcaagaccagcctggccaatgtggtgaaacccccatctctactaa---tacaaaaattagccaggc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80522192 140 +  99763055 gccaggtgcggtggctcacgcctgtaatcccagcagtttgggaggccaaggcaggtggatcacttgaggtcaggagttcaagaccagcctggccaatgtggtgaaacccccatctctactaa---tacaaaaattagccaggc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       122090 139 -   1709092 gccaggtgcggtggctcacgcctgtaatcccagcagtttgggaggccaaggcaggtggatcacttgaggtcaggagttcaagaccagcctggccaatgtggtgaaa-ccccatctctactaa---tacaaaaattagccaggc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17284092 138 - 121039945 gccgggtgtggtggctcatgcctataatcccagcagtttgggaggccaaggcaggtggattacttgagatcaggagttcaagatcagcctggccaatgtggtgaaa-ccccatctctactaa----acaaaaattagccaggc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60958037 139 + 169600520 gccaggtgcggtggctcatgtctgtaatcccagaagtttggaaggccaaggcaggtggatcacttgaggtcaggagttcaagaccagcctggccaatgtggtgaaa-ccccatctctactaa---tacaaaaattagccaggc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108484778 139 - 171882078 gccaggtgcggtggctcatgtctgtaatcccagaagtttggaaggccaaggcaggtggatcacttgaggtcaggagttcaagaccagcctggccaatgtggtgaaa-ccccatctctactaa---tacaaaaattagccaggc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       101319 139 -   2311642 gccaggtgcggtggctcatgtctgtaatcccagaagtttggaaggccaaggcaggtggatcacttgaggtcaggagttcaagaccagcctggccaatgtggtgaaa-ccccatctctactaa---tacaaaaattagccaggc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        93365 139 -   1987038 gccaggtgcggtggctcatgtctgtaattccagaagtttggaaggccaaggcaggtggatcacttgaggtcaggagttcaagaccagcctggccaatgtggtgaaa-ccccatctctactaa---tacaaaaattagccaggc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21174757 139 -  24206276 gccaggtgcagtggctcatctctgtaatcccagaagtttggaaggccaaggcaggtggatcacttgaggtcaggagttcaagaccagcctggccaatgtggtgaaa-ccccatctctactaa---tacaaaaattagccaggc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       116649 139 -   1397330 gccaggtgcggtggctcatgtctgtaattccagaagtttggaaggccaaggcaggtggatcacttgaggtcaggagttcaagaccagcctggccaatgtggtgaaa-ccccatctctactaa---tacaaaaattagccaggc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       114383 139 -   1784207 gccgggtgcggtggctcatgtctataatcccagaagtttggaaagccaaggtaggtggatcacttgaggtcaggagttcaagaccagcctggccaatgtggtgaaa-ccccatctctactaa---cacaaaaactagccaggc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22321459 141 + 158406734 gccaggtgcagtggctcatgcctttaatccctgcactttgagaggccaaagtggatggatcacttgagatcaggagttcaagaccagcctggccaatgtggtgaaa-tgccatctctactaaaaacac-aaaatcagctgggt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50548315 142 +  54856640 gccaggtacagtggctcatgcctttaatcccagcactttgggaggccaaagtgggtggatcacttgagatcaggagttcaagaccagcctggccaatgtggtgaaa-tgccatctctactaaaaatacaaaaatcggccgggc
i saiBol1.JH378108          C 0 I 301
s cebCap1.NW_016107610v1       699339 142 -   2910086 gccaggtacagtggctcatgcctttaatcccagcactttgggaggccaaagtaggtggatcacttgagatcaggagttcaagaccagcctggccaatgtggtgaaa-tgccatctctactaaaaatacaaaaatcagctgggt
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40720322 142 +  42888418 gccaggtgcagtagctcatgcctttaatcccagcactttgggaggccaaagtgggtggatcacttgagatcaggagttcaagaccaacctggccaatgtggtgaaa-tgccatctctactaaaaatacaaaaatcacctgggt
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             713408 140 -  36342412 gccaagtactatggctcgtacctgtaatcctaacactataggaggccgaggcgggaggattgcctgagatcagtagtttgagaccagcctaagcaa--gagagaga-tgccatctctactaaaaataggaaaatcagctggac
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1928350 361 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=1656709.000000
s hg38.chr15_KI270850v1_alt    412642 173 +    430880 gtggtggggcatacccgtaatcccagttactcaggagactgaggcaggagactcacttggacccgggagttggaggttgcagtgagccgagatcacgccactgcactccagcctggacaacagagcgggactccgtctcagg-------------aaaaaaa-------------------------------------aaTTACCCATAAT--------------------------------------TTTTTTCTGCT
s panTro5.chr15              63565085 173 +  83230942 gtggtggggcatacccgtaatcccagttactcaggagactgaggcaggagactcacttggacccgggagttggaggttgcagtgagccgagatcacgccactgcactccagcctggacaacagagcgggactccgtctcagg-------------aaacaaa-------------------------------------aaTTACCCATAAT--------------------------------------TTTTTTCTGCT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80522332 173 +  99763055 gtggtggggcatacccgtaatcccagttactcaggagactgaggcaggagactcacttggacccgggagttggaggttgcagtgagccgagatcacgccactgcactccagcctggacaacagagcgggactccgtctcagg-------------aaacaaa-------------------------------------aaTTACCCATAAT--------------------------------------TTTTTTCTGCT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       122229 173 -   1709092 gtggtggggcatacccgtaatcccagttactcaggagactgaggcaggagactcacttggacccgggagttggaggctgcagtgagccgagatcacgccactgcactccagcctggacaacagagtgggactccgtctcagg-------------aaaaaaa-------------------------------------aaTTACCCATAAT--------------------------------------TTTTTTCTGCT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17284230 172 - 121039945 gtggtggggcatacccgtaatcccagttactcaggagac--aggtaggagactcacttggacccaggagttggaggttgcagtgagccgagatcacgccgctgcactccagcctggacaacagagcgggactctgtctcagg---a---------aaaaaaa-------------------------------------aaTTACCCATAAT--------------------------------------TTTTTTCTGCT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60958176 173 + 169600520 atggtggcgcacacctgtaatcccagttattcaggagaccgacgcagaagaatcacttggacccgggagtcggaggttgcagtgagccgagatcacgccactgcacttcagcccggacaacagagcgggattccgtctcagg---a---------aaaaaaa-------------------------------------aaTTACCCATAAT--------------------------------------TTTCTTCTG-T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108484917 173 - 171882078 atggtggcgcacacctgtaatcccagttactcaggagaccgacgcagaagaatcacttggacccgggagtcggaggttgcagtgagccgagatcacgccactgcacttcagcctggacaacagagcgggattccgtctcagg---a---------aaaaaaa-------------------------------------aaTTACCCATAAT--------------------------------------TTTTTTCTG-T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       101458 173 -   2311642 atggtggcgcacacctgtaatcccagttactcaggagaccgacgcagaagaatcacttggacccgggagtcggaggttgcagtgagccgagatcacgccactgcacttcagcctggacaacagagcgggattccgtctcagg---a---------aaaaaaa-------------------------------------aaTTACCCATAAT--------------------------------------TTTTTTCTG-T
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        93504 174 -   1987038 atggtggcgcacacctgtaatcccagttactcaggagaccgacacagaagaatcacttggacccgggagtcggaggttgcagtgagccgagatcatgccactgcacttcagcctggacaacagagcgggattccgtctcagg--aa---------aaaaaaa-------------------------------------aaTTACCCATAAT--------------------------------------TTTTTTCTG-T
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21174896 173 -  24206276 atggtggcgcacacctgtaatcccagttactcaggagaccgaggcagaagaatcacttggacccaggagtccgaggttgcagtgagccgagatcacgccactgcactccagcctggacaacagagcgggattccgtctcagg---a---------aaaaaaa-------------------------------------aaTTACCCATAAT--------------------------------------TTTTTCCTG-T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       116788 170 -   1397330 atggtggcgcacacctgtaatcccagttactcaggagaccgacgcagaag---cacttggacccgggagtcggaggttgcagtgagccgagatcacgccactgcacttcagcctggacaacagagcgggattccgtctcagg---a---------aaaaaaa-------------------------------------aaTTACCCATAAT--------------------------------------TTTTTTCTG-T
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       114522 173 -   1784207 atggtggcgcacacctgtaatcccagttactgaggagactgaggcagaagaatcacttggacccgggagtcggaggttgcagtgagccgagatcatgccactgcactccagcctggacaacagagcgggattccatctcagg---a---------aaaaaaa-------------------------------------aaTTACCCATAAT--------------------------------------TTTTTTCTG-T
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22321600 176 + 158406734 gtggtggcgcacacctgtaatcccatctactcaggagactgaggcaggagaatctcttgaacccgggagtcgtacgttgcagtgagccgagataacaccactgcactctggcctggacaacaaagcgagattcggtctaaagaaaa---------aaaaaaa-------------------------------------aaaTACCCATAAT--------------------------------------TTTTTTCCG-T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50548758 172 +  54856640 gtggtggcgcacacctgtaatcccatctactcaggagactgaggcagaagaatcccttgaacccggaagtcgtatgttgcagtgagccgagatcacaccactgcactccagcctggacaacagagtgagattcggtctaaag-------------aaaaaaa-------------------------------------aaTTACCCATAAT--------------------------------------TTTTTTCTG-T
i saiBol1.JH378108          I 301 C 0
s cebCap1.NW_016107610v1       699481 172 -   2910086 gtggtggtgcacacctgtaatcccatctcctcaggagactgaggcaggagaatcccttgaacccgggagttgtacattgcagtgagccgaaatcacaccactgcactccagtctggacaacagagcgagattcggtctaaag-------------aaaaaaa-------------------------------------aaTTACCCGTAAT--------------------------------------TTTTTTCTG-T
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40720464 172 +  42888418 gtggtggcgcacacctgtaatcccatgtactcaggagactgacgcagcagaattgcttgaacctgggagtcacacgttgcagtgagccgagatcataccactgcactccagcctggacaacagagcgagattcggactaaag-------------aaaaaga-------------------------------------aaTTACCCGTAAT--------------------------------------TTTTTTCCG-T
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             713548 251 -  36342412 actgtggtgagatcatctagtcccaggtacacaagaggctgaggcaagaatatcacttgagcccaggagtttgaggttgctgtgagctatactgacatcatggcactctagcctgggta--agagtgagatt--gtctcaaa---acaaacaagcaaaaaaaGTACATTTGTCTGAAACAAGTGGGTAATTTTAATTCTAATGACAGAAAATTGAGTAAACAAAATGTTAGCAAGACATCAATAAAAAGATTTTTCCT---
i otoGar3.GL873530          C 0 I 154
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1928350 361 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=3007373.000000
s hg38.chr15_KI270850v1_alt    412815 294 +    430880 ATTACC-----TACCTTcactgtcacatttatatcattccagtgtttttctatgcatatatatttaaggccattctttttacacttt---tttttac---------------acctgttttacac-ttcgct-ttttttca-tttcagacactgtagttatctttctttgccattaagtag-tcttctataaacattatattttatggtacatgatattccatggtatagct-ctcctatcatttacttaacattctgttg---ccaaattgtccctagttataatgctg-tccataaacaatcttaggttttcataattctgatt
s panTro5.chr15              63565258 297 +  83230942 ATTACC-----TACCTTcactgtcacatttatatcattccagtgtttttctatgcatatatatttaaggccattctttttacactttgcttttttac---------------acctgtcttacac-ttcgct-ttttttca-tttcagacactgtagttatctttctttgccattaagtag-tcttctataaacattatattttatggtacatgatattccatggtacagct-ctcctatcatttacttaacattctgttg---ccaaattgtccctagttataatgctg-tccataaacaatcttaggttttcataattctgatt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80522505 297 +  99763055 ATTACC-----TACCTTcactgtcacatttatatcattccagtgtttttctatgcatatatatttaaggccattctttttacactttgcttttttac---------------acctgtcttacac-ttcgct-ttttttca-tttcagacactgtagttatctttctttgccattaagtag-tcttctataaacattatattttatggtacatgatattccatggtatagct-ctcctatcatttacttaacattctgttg---ccaaattgtccctatttataatgctg-tccataaacaatcttaggttttcataattctgatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       122402 295 -   1709092 ATTACC-----TACCTTCACTGTCACATTTATATCATTCCAGTGTTTTTCTATGCATATATATTTAAGGCCATTCTTTTTACACTTTGCTTTTTTAC---------------ACCTGTCTTACAC-TTCACT-TTTTTTCA-TTTCAGACAC--TAGTTATCTTTCTTTGCCATTAAGTAG-TCTTCTATAAACATTATATTTTATGGTACATGATATTCCATGGTATAGCT-CTCCTATCATTTACTTAACATTCTGTTG---CCAAATTGTCCCTAGTTATAATGCTG-TCCATAAACAATCTTAGGTTTTCATAATTGTGATT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17284402 311 - 121039945 ATTACC-----CACCTTcactgtcacatttatatcattccagtgtttttctatgcatatatatttaaggccattctttttacactttgcttttttacattttgcttttttatacctgtcttacac-tttgct-ttttttca-tttcagacactgtagttatctttctttgccattaagtag-tcttctataaacattata-tttatggtacatgatattccatggtataggt-ctcctatcatttacttaacattctgttg---ccaaattgtccctagttataatgctg-tccataaacgatcttaggttttcataattctgatt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60958349 311 + 169600520 ATTACC-----CACCTTCACTGTCACATTTATACCACTTCAGGGTTTTTCTATGCATATATACTTAAGGCCATTCTTTTGACACTTTGCTTTTATACATTTTGCTTTTTTACACCTgtcttacac-tttg-t-ttttttca-tttcagacactgtagttatctttctttgccattaagtag-tcttctacaaacattatattttatggtacaggatactccatgatacaact-ttcctatcatttacttaacattctgtta---ccaaattgtccctagttataatgctg-tccataaacaatcttaggttttcataattctgatt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108485090 310 - 171882078 ATTACC-----CACCTTCACTGTCACATTTATACCACTTTAGGGTTTTTCTATGCATATATACTTAAGGCCATTCTTTTGACAC-TGGCTTTTATACATTTTGCTTTTTTACACCTgtcttacac-tttg-t-ttttttca-tttcagacactgtagttatctttctttgccattaagtag-tcttctacaaacattatattttatggtacaggatactccatgatacaact-ttcctatcatttacttaacattctgtta---ccaaattgtccctagttataatgctg-tccataaacaatcttaggttttcataattctgatt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       101631 311 -   2311642 ATTACC-----CACCTTCACTGTCACGTTTATACCACTTCAGGGTTTTTCTATGCATATATACTTAAGGCCATTCTTTTGACACTTTGCTTTTATACATTTTGCTTTTTTACACCTgtcttacac-tttg-t-ttttttca-tttcagacactgtagttatctttctttgccattaagtag-tcttctacaaacattatattttatggtacaggatactccatgatacaact-ttcctatcatttacttaacattctgtta---ccaaattgtccctagttataatgctg-tccataaacaatcttaggttttcataattctgatt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        93678 311 -   1987038 ATTACC-----CACCTTCACTGTCACATTTATACCACTTCAGGGTTTTTCTATGCATATATACTTAAGGCCATTCTTTTTACACTTTGCTTTTATACATTTTGCTTTTTTACACCTGTCTTACAC-TTTG-T-TTTTTTCA-TTTCAGACACCGTAGTTATCTTTCTTTGCCATTAAGTAG-TCTTCTACAAACATTATATTTTATGGTACAGGATACTCCATGATACAACT-TTCCTATCATTTACTTAACATTCTGTTA---CCAAATTGTCCCTAGTTATAATGCTG-TCCATAAACAATCTTAGGTTTTCATAATTCTGATT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21175069 309 -  24206276 ATTACC-----CATCTTCACTGTCACATTTATACAATTTCAGGGTTTTTCTATGCATATATACTTAAGGTCATTCTTTTTACACTTTGCTTTTATACATTTTGCTTTTTTACACCTGTCTTACAC-TTTG-T-TTTTTTCA-TTTCAGACACTGTAGTTATCTTTCTTTGCCATTAAGTAG-TCTTCTACAAACATTATATTTTATGGTACAGGATACTCCATGATACAACT-TTCCTATCATTTACTTAACATTCTGTTA---CCAAATTGTCCCTAGT--TAATGCTG-TCCATAAACAATCTTAGGTTTTCATAATTCTGATT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       116958 311 -   1397330 ATTACC-----CACCTTCACTGTCACATTTATACCACTTCAGGGTTTTTCTATGCATACATACTTAAGGCCATTCTTTTTACACTTTGCTTTTATACATTTTGCTTTTTTACACCTgtcttacac-tttg-t-ttttttca-tttcagacaccgtagttatctttctttgccattaagtag-tcttctacaaacattatattttatggtacaggatactccatgatacaact-ttcctatcatttacttaacattctgtta---ccaaattgtccctagttataatgctg-tccataaacaatcttaggttttcataattctgatt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       114695 312 -   1784207 ATTACA-----CACCTTCACTGTCACATTTATATCATTCCAGGGTTTTTCTATGCATATATACTTAAGGCCATTCTTTTTACACTTTGCTTTTATACATTTTGCTTTTTTACATCTGTCTTACACTTTTG-T-TTTTTTCA-TTTCAGACACCGTAGTTATCTTTCTTTGCCGTTAAGTAG-TCGTCTACAAACATTATATTTTATGGTACAGGATACTCCATGATACAACT-TTCCTATCATTTACTTAACATTCTATTA---CCAAATTGTCCCTAGTTATAACGCTG-TCCATAAACAATCTTAGGTTTTCATAATTCTGACT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22321776 307 + 158406734 ATTACC-----CACCTTCACTCTCACA--TGTATCATTCTAGTGTTTTTCTGTACATGTATACTTAAGGCCATTCTTTTTACAC--TGCTTTTTTACATTTTGCTTTTTTACATCTgtcttacac-tttg-c-ttttttca-tttcagataatgtagttatctttgtttgccattaagtag-tattctataaacattatatttaatggcaaatgatattccatgatatggct-ttcctaccatgtacttaacATTCTGTTG---CCAAATTGTCCCTAGCTATTATGCTG-TCCATAAATAATCTCAGGTTCTGATAATTCTGATT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50548930 310 +  54856640 ATTACC-----CACCTTCACTTTCACATCTGTATCATTCTAGTGTTCTTCTGTACATGTATACTTAAGGCCATTCTTTTTACAC--TGCTTTTTTACATTTTGCTTTTTTACATCTGTCTTACAC-TTTG-CTTTTTTTTA-TTTCAAATACTGTAGTTATCTTTTTTtgccattaagtag-tattctataaacattatatttaatggtaaatgatattccatgatatggct-ttcccaccatttacttaacATTCTGTTG---CCAAATTGTCCCTAGCTATAATGCTG-TCCATAAATAATCTCAGGTTCTCATAATTCTGATT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       699653 310 -   2910086 ATTACC-----CACCTTCACTCTCACATCTGTATCATTCTAGTGTTTTTCCGTACATGTATGATTAAGGCCATTCTTTTTACAC--TGCTTTTTTACATTTTGCTTTTTTACATCTgtcttacac-tttg-c-ttttttcattttcagatactgtagttatctttctttgccattaagtac-tattctataaatattatatttaatggtaaatgatattccatgatatggct-ttcctaccatttacttaacATTCTGTTG---CCAAATTGTTCCTAGCTATAATGCTG-TCCATAAATAATCTCAGGTTCTCATAATTCTGATT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40720636 311 +  42888418 ATTACC-----CACCTTCACTCTCACATCTGTATCATTCTAGTGTTTTTCTGTACATGTATACTTAAGACCATTCTTTTTAAAC--TGCTTTTTTACATTTTGCTTTTTTACATCTgtcttacac-tttg-c-ttttttca-tttcagatactgtagttatctttctttgctattaagtagttattctataaacattatatttaatgttaaatgatattccatgatatggct-ttcctaccatttacttaacATTCTGTTG---CCAAATTGTCCCGAGCTATAATGCTGTTCCATAAATAATCTCAGGTTCTCATAATTCTGATT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             713953 270 -  36342412 ATTACCCGTAACACCTTCACTGTCATATGTACAGCATTCTGGTCAATTTCTATGCATATATATATACAGCCACCCTCTTCA----------------------------------------GTAC-TTTG-C-TTTTTACA-CTTCAGATACTA-----ATCTTTTTTTGCTACTAAGTAG-TCTTCTACAAACACCATATTTAATTATGAAGAACATTCCATAGTATGTCTAATGCTATGATTTACTTAACCTTCTGTTGTTACCAAATT-TCCCCAGTTACGATAATA-T-CATAAACGATC--AAGTTTT-ACAATTCAAATT
i otoGar3.GL873530          I 154 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1928350 361 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=8171110.000000
s hg38.chr15_KI270850v1_alt    413109 753 +    430880 atttccttcaaggaacaaaattacttttgatcagaagctacaagtttgggttatttcttaaggttcttcataGAAAAATATATATCCTAGTTTACTTTCTCATTAATCACAAG-GTTGGTATTTTTG--------------------------CTGGT--------------------------GACCACAG-AAAAAATGCTCTCTGCTGTAGGC--CAGGCATCCTTGTTTCACC-ATTCGAGAATACAGGCCCACAGCCCTGAGCTGA-A-TCACAAGTGGAAAGCAG-AGAGAGTTCACCACACATGGGAGGG---GCTGGGTATACGTGAAAGGCTCAAGAACATCAGCTACCTTTGACAGAAACCTTTCCTAGAATTCCTTGAGTTCCCTTAAATCTGCAG--Tattgtcttaacatctg-agccccataagaaacctgtgaggcaggttgagcaggtaccattctgtcctgcagctgagaaaactgacctctttatctcactgcccagggtcaAGCTTAGAACCCAGGTTTCCCAATTTCCTCAAGA---TCTTCCTC---CTGCTTCTCTTA-GAATGTTCTAA-GAGGCTGAGAAGGAGCTGAAGAGCCCGAGAAGTCT-TTAACTTGTACTT----CGGCTACTGACCCTGGGCAGAGTATAATGGTAACAACATCGTCACCAGACCCTGGCATCTT-ACCAGTGAAGTCACTGGGCTCCCTGGACAGCTGCAAACATACACTCTGGAAAGCTCCTCTCCCATC-AATCATGGGTCCTTTCCCTGA---AGTCCAAC-ACCTAGTATTAGCTGAAAAATATTTTCCTG
s panTro5.chr15              63565555 753 +  83230942 atttccttcaaggaACAAAATTACTTTTGATCAGAAGCTACAAGTTTGGGTTATTTCTTAAGGTTCTTCATAGAAAAATATATATCCTAGTTTACTTTCTCATTAATCATAAG-GTTGGTGTTTTTG--------------------------CTGGT--------------------------GACCACAG-AAAAAATGCTCTCTGCTGTAGGC--CAGGCATCCTTGTTTCACC-ATTCGAGAATACAGGCCCACAGCCCTGAGCTGA-A-TCACAAGTGGAAAGCAG-AGAGAGTTCACCACACAAGGGAGGG---GCTGGGTATACGTGAAGGGCTCAAGAACATCAGCTACCTTTGACAGAAACCTTTCCTAGAATTCCTTGAGTTCCCTTAAATCTGCAG--Tattgtcttaacatctg-agccccataagaaacctgtgaggcaggttgagcaggtaccattctgtcctgcagctgagaaaactgacctctttatctcactgcccagggtcaAGCTTAGAACCCAGGTTTCCAAATTTCCTCAAGA---TCTTCCTC---CTGCTTCTCTTA-GAAGGTTCTAA-GAGGCTGAGAAGGAGCTGAAGAGCCCGAGAAGTCT-TTAACTTGTACTT----CGGCTACTGACCCTGGGCAGAGTATAATGGTAACAACATCGTCACCAGACCCTGGCATCTT-ACCAGTGAAGTCACTGGGCTCCCTGGACAGCTGCAAACACACACTCTGGAAAGCTCCTCTCCCACC-AATCATGGGTCCTTTCCCTGA---AGTCCAAC-ACCTAGTATTAGCTGAAAAATATTTTCCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80522802 753 +  99763055 atttccttcaaggaACAAAATTACTTTTGATCAGAAGCTACAAGTTTGGGTTATTTCTTAAGGTTCTTCATAGAAAAATATATATCCTAGTTTACTTTCTCATTAATCACAAG-GTTGGTGTTTTTG--------------------------CTGGT--------------------------GACCACAG-AAAAAATGCTCTCTGCTGTAGGC--CAGGCATCCTTGTTTCACC-ATTCGAGAATACAGGCCCACAGCCCTGAGCTGA-A-TCACAAGTGGAAAGCAG-AGAGAGTTCACCACACAAGGGAGGG---GCTGGGTATACGTGAAGGGCTCAAGAACATCAGCTACCTTTGACAGAAACCTTTCCTAGAATTCCTTGAGTTCCCTTAAATCTGCAG--Tattgtcttaacatctg-agccccataagaaacctgtgaggcaggttgagcaggtaccattctgtcctgcagctgagaaaactgaCCTCTTTATCTCACTGCCCAGGGTCAAGCTTAGAACCCAGGTTTCCAAATTTCCTCAAGA---TCTTCCTC---CTGCTTCTCTTA-GAAGGTTCTAA-GAGGCTGAGAAGGAGCTGAAGAGCCCGAGAAGTCT-TTAACTTGTACTT----CGGCTACTGACCCTGGGCAGAGTATAATGGTAACAACATCGTCACCAGACCCTGGCATCTT-ACCAGTGAAGTCACTGGGCTCCCTGGACAGCTGCAAACACACACTCTGGAAAGCTCCTCTCCCACC-AATCATGGGTCCTTTCCCTGA---AGTCCAAC-ACCTAGTATTAGCTGAAAAATATTTTCCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       122697 751 -   1709092 ATTTCCTTTAAGGAACAAAATTACTTTTGATCAGAAGCTACAAGTTTGGGTTATTTCTTAAGGTTCTTCATAGAAAAATATATATCCTAGTTTACTTTCTCATTAATCACAAG-GTTGGTATTTTTG--------------------------CTGGT--------------------------GAACACAG-AAAAAATGCTCTCTGCTGTAGGC--CAGGCATCCTTGTTTCACC-ATTCGAGAATACAGGCCCACAGCCCTGAGCTGA-A-TCACAAGTGGAAAGTAG-AGAGAGTTCACCACACAAGGGAGGG---GCTGGGTATACGTGAAGGGCTCAAGAACATCAGCTACCTTTGACAGAAACCTTTCCTA-AATTCCTTGAGTTCCCTTCAATCTGCAG--Tattgtcttaacatctg-agccccataagaaacctgtgaggcaggttgagcaggtaccattctgtcctgcagctgagaaaactgaCCTCTTTATCTCACTGCCCAGGGTCAATCTTAGAACCCAGGTTTCCCAATTTCCTCAAGA---TCTTCCTC---CTGCTTCTCTTA-GAAGGTTCTAA-GAGGCTGAGAAGGAGCTGAAGAG-CCGAGAAGTCT-TTAACTTGTACTT----CGGCTACTGACCCTGGGCAGAGTATAATGGTAACAACATCGTCACCAGACCCTGGCATCTT-ACCAGTGAAGTCACTGGGCTCCCTGGACAGCTGCAAACATACACTCTGGAAAGCTCCTCTCTCATC-AATCATGGGTCCTTTCCCTGA---AGTCCAAC-ACCTAGTATTAGCTGAAAAATATTTTCCTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17284713 753 - 121039945 acttccttcaaggaACAAAATTACTTTTGATCAGAAGCTACAAGTTTGGGTTATTTCTTAAGGTTCTTCATAGAAAAATATATATCCTAGTTTACTTCCTCATTAATCACAAA-GTTGGTATTTTTG--------------------------CTGGT--------------------------GAACACAGAAAAAAATGCTCTCTGTTGTAGGC--CAGGCATCCTTGTTTCACC-ATTCGAGAATACAGGCCCACAGCCCTGAGGTGA-A-TCACAAGTGGAAAGCAG-AGAGAGTTCACCACACAAGGGAGGG---GCTGGGTATATGTGAAGGGCTCAAGAACATCAGCTACCTTTGACAGAAACCTTTCCTACAATTCCTTGAGTTCCCTTAAATCTGCAG--TAATGTCTTAAcatctg-agccccataagaaacctgtgaggcaggctgagcaggtaccattctgtcctacagctgggaaaactgaCCTCTTTATCTCACTGCCCAGGGTCAAGCTTAGAACCCAGGTTTCCCAATTTCCTCAAGA---TCTTCCTC---CTGCTTCTCTTA-GAAGATTCTAA-GAGGCTGAGAAGGAGATGAAGAGCCCGAGAAGTCT-TTAACTCATACTT----TGGCTACTGACCCTGGGCAGAGTATAATGGTAACAACATCCTCACCAGACTCTGGCATCTT-ACCAGTGAAGTCACTGGGCTCCCTGGACAGTTGCAAACATACACTCCTGAAAGCTCCTCTCCCACC-AATCATGGGTCCTTTCCCTTA---AGTCCAAC--CCTAGTATTAGCTGAAAAATATTTTCCTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60958660 750 + 169600520 atttccttcaggtaaCAAAATTACTTTTGATCAGAAGCTACAAGTTTGGGTTATTTCTTAAGGTTCTTCATAGAAAAATATATATCCTAGTTTACTTCCTCATTAACCACAAG-GTTGGTATTTTTG--------------------------CTGGT--------------------------TAACACAG-GAAAAATGCTCTCTACTGTAGGC--CAGGCATCCTTGTTTCACC-ACTTGAGAACACAGGCCCACAGCCCTGAGCTGA-A-TCACAAGTGGAAAGC---AGAGAGCTGACCACACAAGGGAGGG---GCTAGGTATATGTGAAGGGCTCAAAAACATCAGCTACCTCTGACAGAAACCTTTCCTACAATCCCTCGAGTTTCCTTAAATCTGCAG--TGTTGTCTTAAcatctg-actcccataagacacctgtgagtcaggttgaacaggtaccattctgtcctacagctgagaaaactgaCCT-TTTATCTCACTGCCCAGGGTCAAGCTTAGAACCCAGGTTTCCCAATTTCCTCAAGA---TCTTCCTC---CTGTTTCTCTTA-GAAGGTTCTAA-GAAGCTGAAAAGGAGTTGAAGAGCCCAAGAAGTCT-ATAACTTGTACTT----CAGCTACTGACCCTGGGCAGAGTATAATGGTAACAACATCCTCACCAGACCCCGGCATCTT-ACCAGTGAAGTCACTGGGCTCCCTGGACAGTTGCAAACATACATTCCTGAAAGCTCCTCTCCCATC-AATCATGGGTCCTTTCCCTTA---GGTCCAAC-ACCTAGTATTAGCTGAAAAATATTTTCCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108485400 750 - 171882078 atttccttcaggtaaCAAAATTACTTTTGATCAGAAGCTACAAGTTTGGGTTATTTCTTAAGGTTCTTCATAGAAAAATATATATCCTAGTTTACTTCCTCATTAACCACAAG-GTTGGTATTTTTG--------------------------CTGGT--------------------------TAACACAG-GAAAAATGCTCTCTACTGTAGGC--CAGGCATCCTTGTTTCACC-ACTTGAGAACACAGGCCCACAGCCCTGAGCTGA-A-TCACAAGTGGAAAGC---AGAGAGCTGACCACACAAGGGAGGG---GCTAGGTATATGTGAAGGGCTCAAAAACATCAGCTACCTCTGACAGAAACCTTTCCTACAATCCCTCGAGTTTCCTTAAATCTGCAG--TGTTGTCTTAAcatctg-actcccataagacacctgtgagtcaggttgaacaggtaccattctgtcctacagctgagaaaactgaCCT-TTTATCTCACTGACCAGGGTCAAGCTTAGAACCCAGGTTTCCCAATTTCCTCAAGA---TCTTCCTC---CTGTTTCTCTTA-GAAGGTTCTAA-GAAGCTGAAAAGGAGTTGAAGAGCCCAAGAAGTCT-ATAACTTGTACTT----CAGCTACTGACCCTGGGCAGAGTATAATGGTAACAACACCCTCACCAGACCCCGGCATCTT-ACCAGTGAAGTCACTGGGCTCCCTGGACAGTTGCAAACATACATTCCTGAAAGCTCCTCTCCCATC-AATCATGGGTCCTTTCCCTTA---GGTCCAAC-ACCTAGTATTAGCTGAAAAATATTTTCCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       101942 750 -   2311642 acttccttcaggtaaCAAAATTACTTTTGATCAGAAGCTACAAGTTTGGGTTATTTCTTAAGGTTCTTCATAGAAAAATATATATCCTAGTTTACTTCCTCATTAACCACAAG-GTTGGTATTTTTG--------------------------CTGGT--------------------------TAACACAG-GAAAAATGCTCTCTACTGTAGGC--CAGGCATCCTTGTTTCACC-ACTTGAGAACACAGGCCCACAGCCCTGAGCTGA-A-TCACAAGTGGAAAGC---AGAGAGCTGACCACACAAGGGAGGG---GCTAGGTATATGTGAAGGGCTCAAAAACATCAGCTACCTCTGACAGAAACCTTTCCTACAATTCCTCGAGTTTCCTTAAATCTGCAG--TGTTGTCTTAAcatctg-actcccataagacacctgtgagtcaggttgaacaggtaccattctgtcctacagctgagaaaactgaCCT-TTTATCTCACTGCCCAGGGTCAAGCTTAGAACCCAGGTTTCCCAATTTCCTCAAGA---TCTTCCTC---CTGTTTCTCTTA-GAAGGTTCTAA-GAAGCTGAAAAGGAGTTGAAGAGCCCAAGAAGTCT-ATAACTTGTACTT----CAGCTACTGATCCTGGGCAGAGTATAATGGTAACAACACCCTCACCAGACCCTGGCATCTT-ACCAGTGAAGTCACTGGGCTACCTGGACAGTTGCAAACATACATTCCTGAAAGCTCCTCTCCCATC-AATCATGGGTCCTTTCCCTTA---GGTCCAAC-ACCTAGTATTAGCTGAAAAATATTTTCCTG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        93989 750 -   1987038 ATTTCCTTCAAGTAACAAAATTACTTTTGATCAGAAGCTACAAGTTTGGGTTATTTCTTAAGGTTCTTCATAGAAAAATATATATCCTAGTTTACTTCCTCATTAACCACAAG-GTTGGTATTTTTG--------------------------CTGGT--------------------------GAACACAG-GAAAAATGCTCTCTACTGTAGGC--CAGGCATCCTTGTTTCACC-ACTCGAGAACACAGGCCCACAGCCCTGAGCTGA-A-TCACAAGTGGAAAGC---AGAGAGCTGACCACACAAGGGAGGG---GCTAGATATATGTGAAGGGCTCAAAAACATCAGCTACCTCTGACAGAAACCTTTCCTACAATTTCTTGAGTTTCCTTAAATCTGCAG--TGTTGTCTTAAcatctg-actcccataagacacctgtgagtcaggttgaacaggtaccattctgtcctacagctgagaaaactgaCCT-TTTATCTCACTGCCCAGGGTCAAGCTTAGAACCCAGGTTTCCCAATTTCCTCAAGA---TCTTCCTC---CTGTTTCTCTTA-GAAGGTTCTAA-GAAGCTGAAAAGGAGTTGAAGAGCCTGAGAAGTCT-GTAACTTGTACTT----CAGCTACTGACCCTGGGCAGAGTATAATGGTAACAACACCCTCACCAGACCCTGGCATCTT-ACCAGTAAAGTCACTGGGATCCCTGGACAGCTGCAAACATACATTCCTGAAAGCTCCTCTCCTATC-AATCATGCGTCCTTTCCCTTA---GGTCCAAC-ACCTAGTATTAGCTGAAAAATATTTTCCTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21175378 749 -  24206276 ATTTCCTTCAAGTAACAAAATTACTTTTGATCAGAAGCTACAAGATTGGATTATTTCTTAAGGTTCTTCATAGAAAAATATATATCCTAGTTTACTTCCTCATTAACCACAAG-GTTGGTATTTTTG--------------------------CTGAT--------------------------GAACACAG-GAAAAATGCTCTCTACTGTAGGC--CAAGCATCCTTGTTTCACC-ACTCGAGAACACAGGCCCACAGCCCTGAGCTGA-A-TCACAAGTGGAAAGC---AGAGAGTTGACCACACAAGGGAGGG---GCTAGGTATATGTGAAGGGCTCAAAAACATCAGCTATCTCTGACAGAAACCTTTCCTACAATTCCTTGAGTTTCCTTAAATCTGCAG--TGTTGTCTTAAcatctg-actcccataagacacctgtgagtcaggttgaacaggtaccattctgtcctacagctgagaaaattgaCCT-TTTATCTCACTGCCCAGGATCAAGCTTAGAACCCAGGTTTCCCAGTTTCCTCAAGA---TCTTCCTC---CTGTTTCTCTTA-GAAGGTTCTAAGGAAGCTGAAAAGGAGTTGAAGAGCCCGAGAAGTCT-GTAACTTGTACTT----CAGCTACTGACCCTGGGCAGAGTATAATGGTAACAACACCCTCACCAGACCCTGGCATCTT-ACCAGTGAAGTCACTGGGCTCCCTGGACAGTTGCAAACATACACTCCTGAAAGCTCCTCTCCCATC-AATCATGGGTCCTTTCCCTTA-----CCCAAC-ACCTAGTATTAGCTGAAAAATATTTTTCTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       117269 750 -   1397330 atttccttCAAGTAACAAAATCACTTTTGATCAGAAGCTACAAGTTTGGGTTATTTCTTAAGGTTCTTCATAGAAAAATATATATCCTAGTTTACTTCCTCATTAACCACAAG-GTTGGTATTTTTG--------------------------CTGGT--------------------------GAACACAG-GAAAAATGCTCTCTACTGTAGGC--CAGGCATCCTTGTTTCACC-ACTCGAGAACACAGGCCCACAGCCCTGAGCTGA-A-TCACAAGTGGAAAGC---AGAGAGCTGACCACACAAGGGAGGG---GCCAGATATATGTGAAGGGCTCAAAAACATCAGCTACCTCTGACAGAAACCTTTCCTACAATTTCTCGAGTTTCCTTAAATCTGCAG--TGTTGTCTTAAcatctg-actcccataagacacctgtgagtcaggttgaacaggtaccattctgtcctacagctgagaaaactgaCCT-TTTATCTCACTGCCCAGGGTCAAGCTTAGAACCCAGGTTTCCCAATTTCCTCAAGA---TCTTCCTC---CTGTTTCTCTTA-GAAGGTTCTAA-GAAGCTGAAAAGGAGTTGAAGAGCCTGAGAAGTCT-ATAACTTGTACTT----CAGCTACTGACCCTGGGCAGAGTATAATGGTAACAACACCCTCACCAGACCCTGGCATCTT-ACCAGTGAAGTCACTGGGATCCCTGGACAGCTGCAAACATACATTCCTGAAAGCTCCTCTCCTATC-AATCATGGGTCCTTTCCCTTA---GGTCCAAC-ACCTAGTATTAGCTGAAAAATATTTTCCTG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       115007 751 -   1784207 ATTTCCTTCAAGTAACAAAACTATTTTTGATCAGAAGCTACAAGTTTGGGTTATTTCTTAAGGTCCTTCATAGAAAAATATATATCCTAGTTTACTTCCTCATTAACCACTAG-GTTGGTATTTTTG--------------------------CTGGT--------------------------GAACACAG-GAAAAATGCTCTCTACTGTAGGC--CAGGCATCCTTGTTTCACC-GCTCGAGAACACAGGTCCACAGCCCTGAGCTGA-ATTCACAGGTGGAAAGC---AGAGAGCTGACCACACAAGGGAGGG---GCTAGGTATATGTGAAGGGCTCAAAAACATCAGCTACCTCTGACAGAAACCTTTCCTACAATTCCTCGAGTTTCCTTAAATCTGCAG--TGTTGTCTTAAcatctg-actcccataagaaacctgtgagtcaggatgaacaggtaccattctgtcctatagctgagaaaactgaCCT-TTTATCTCACTGCCCAGGGTCAAGCTTAGAACCCAGGTTTCCCAATTTCCTGAAGA---TCTTCCTC---CTGTTTCTCTTA-GAAGGTTCTAA-GAAGCTGAAAAGGAGTTGAAGAGCCTGAGAAGTCT-ATAATATATACTT----CAGCTACTGACCCTGGGCAGAGTATAATGGTAACAACACCCTCACCAGACCCTGGCATCTT-ACCAGTGAAGTCACTGGGCTCCCTGGACAGTTGCAAACATACGCTCCTGAAAGCTCCTCTCCCATC-AATCATGGGTCCTTTCCCTTA---GGTCCAAC-ACCTAGTATTAGCTGAAAAATATTTTCCTG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22322083 753 + 158406734 ATTTTCTTCAAGTAACAAAATTACTTTTGATCAGAAGCAACAAGTTTGGGTTATTTTTTAAGGTTCTTCACAGAAAAATATATATTTTAGTTTACTTCCTCATTAATCACAAG-GTTGGTATTTTTG--------------------------CTGGA--------------------------AAACACAG-GAAAAATGCTCTCTGCAGTAGCC--CAGGCATCCTTGTTTCACC-ACTCAAGAATACAGGCCCACAACCCTGAACTGA-A-TCGCAGGTGGAAAGCAG-AGAGAGTTGACCACACAAGAGAGGG---GGTAGGAATATGTGAAGGGTTCAAGAACATCCGCTACCTTTGACAGGAACCTTTCCTACGATTCCATGAGTTCCCTCAAATCTGCAG--Tattgtcttaacatctg-agctccataagaaacctgtgaggcaggttgagcaggtaccattctgtcctacagctgaacaatctgaCCTCTTTATCTCGCT-CTCAGGGTCAAACTTAGAACACAGGTTTCCCAGCTTCCTCAAGA---TCTTCCTC---CTGTTCCTCTTA-GTAGGTTCTAA-GAGGCTGTGAAGGATCTGAAGAGCCT-AGAAGTCT-ACACCTTGTAGTT----TGGCTACTGTCCCTGGGCAGAGTATAATGGTAACAACACCCTCATAAGACCCTTTTGTTTT-ACCAGAGAAGTCACTGGGCTCCCTGGACAGTTGCAAACATACGCTCCTGAAAGCTGCTCTCCCATC-AAGCATGGGTCATTTCCCTTAGACAGTCCAAC-ACCTAGTATTAGCT-AAAAATATTTTCCTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50549240 753 +  54856640 ATTTTCTTCAATTAACAAAATTACCTTTGATAAGAAGCTACAAGTTTGGGTTATTTCTTAAGGTTCTTCACAGAAAAATATGTATCCTAGTTTACTTTCTCGTTAATCACAAG-GTTAGTATTTTTG--------------------------CTAGA--------------------------AAACACAG-GAAAAATGCTCTCTGCAGCAGGC--CAGGCATCCTTGTTTCACC-ACTCAAGAATACAGGTCCACAACCCTGAACTGA-A-TCTCAGGTGGAAAGCAG-AGAGAGTTGACCACACAAGAGAGGT---GCTAGGGATATGTGAAGAGTTCAAGAACATCCACTACCTTTGACAGGAACCTTTCCTACAATTCCATGAGTTCCCTTAAATCTGCAG--Tattgtctcaacgtctg-agctccataagaaacctgtgagacaggttgagcaggtaccattctgttctacagctgagcaatctgaTCTCTTTATCTCACTGCCCAGTGTCAAACTTACAACCCAGATTTCCCAGCTTCCTCAAGA---TCTTCCTC---CTGTTCCTCTTA-GCAGGTTCTAA-GAGGCTGTGAAGGATCTGAAGAGCCT-ACAAGTCT-ACATCTTGTAGTA----TGGCTACTGTCACTGGGCAGAGTATAACGGTAACACCACCCTCACCAGACCCTTCCGTTTT-ACCAGAGAAGTCACTGGGCTCCCTGGACAGTTGCAAACATACACTCCTGAAAGCTGCTCTCCCATC-AATCATGGGTCATTTCCCTTA-ACAATCCAAC-ACCTAGTATTAGCT-AAAAATAGTATCCTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       699963 749 -   2910086 ATTTTCTTCAAGTAACAAAATTACTTTTGATCAGAAGCTACAAGTTTGGGTTATTTCTTAAGGTTCTTCACAGAAAAATATATATGCTAGTTTACTTTCTCATTAATCACAAG-GTTGGTATTTTTG--------------------------CTGGA--------------------------AAACACAG-GTAAAGTGCTCTCTGCAGTAAGC--CAGGCATCCTTGTTTCACC-ACTC---AATACAGGCCCACGACCCTGAACTGA-A-TCGCAGGTAGAAAGCAG-AGAGAGCTGACCACACAAGAGAGGG---GTTAGGGATATGTGAAGGGTTCAAGGACATCCGCTACCTTTGACAGGAACCTTTCCTATAATTCCATGAGTTCCCTTAAATATGCAG--Tattgtcttaacatctg-agcgccataagaaacctgtgaggcaggttgagcaggtaccattctgtcctacagctgagcaatctgaCCTC--TATCTCACTGCCCAGGGTCAAACTTAGAACCCAGGTTTCCCAGTTTCCTCAAGA---TCTTCCTC---CTGTTCTTCTTA-GCAGGTTCTAA-GAGGCTGTGAAGGATCTGAAGAGCCT-AGAAGTCT-ACACCTGGTAGTT----TGGCTACTGTCCCTGGGCAGAGTAT-ACGGTAACAACACCCTCACCAGACCCTTCCGTTTT-ACCAGAGAAGTCACTGGGCTTCCTGGACAGTTGCAAACATACACTCCTGAAAGCTGCTCTCCCATCAAATCATGGGTCATTTCCCTTAGACAGTCCAAC-ACCTAGTATTAGCT-AAAAATATTTTCCTA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40720947 750 +  42888418 ATTTTCTTCAAGTAACAAAATTACTTTTGATCAGAAGCTACAAGTTTCGGTTATTTCTTAAGGTTCTTCACAGAAAAATATATATCCTAGTTTACTTCCTCATTAATCACAAG-GTTGGTATTTTTG--------------------------CTGGA--------------------------AAACACAG-GAAAAATGCTCTCTGCAGTAGGC--CAGGCATCCTTGTTTCACC-ACTCAAGAATACAGGCCCACAACCATGAACTGA-A-TCGCAGGTGGAAAGC-----AGAGTTGACCACACAAGAGAGGG---GCTAGGGATATGTGAAAGGTTCAAGAACATCCGCTACCTTTGACAGGAACCTTTCCTACAATTCCATGAGTTCCCTTAAATCTACAG--Tattgtcttaacatctg-agctccataagaaacctgtgaggcaggttgagcaggtaccattctgtcctacagctgagcaatctgacctctttatctcactgcccagggtcaaacTTAGAACCCAGGTTTCCCAGCTTCCTCAAGA---TCTTCCTC---CTGTTCCTCTTA-GCAGGTTCTAA-GAGGCTGTGAAGAATCTGAAAAGCCT-AGAAGTCT-ACACCGTGTAGTT----TGGCTACTGTCCCTGGGCAGAGTATAATGGTAACAACATCCTCACCAAACCCTTCTGTTTT-ACCAGAGAAGTCATTGGGCTCCCTGGACAGTTGCAAACATACACTCCTGAAAGCTGCTCTCCCATC-AATCATGGGTCATTTCCCTTAGACAGTCCAAC-ACCTAGTATTAGCT-AAAAATATTTTCCTA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             714223 738 -  36342412 ATTTTCTT-AGGTAACAAAATTACTCTTGATGAGAAACTACAGGTGCAGGTTATTTCTTAAGGTTTTTCATAG-AAAATATAACACTTAGTTTGCTTCCTCATTAACCACAAATGTGGGTATTTCTGCCGGCTTGTTCTACATAGGGGTTTTCCTGGA--------------------------GAACACAG-G-AAAATGCTCTATGTTGTAGGC--CTAGCATCCTTGCTTGATC-ATTCAAGAACAAGGGTCCACAGCCCCAAGACGACA-TCTCAGGTGGGAACCTG-AGAGAGCTGACCAC-CAGGGTGGGGAGTGTTAGGTATACGTGAAGGAC-CTGGAAGATCACCTACCT-TGACAGGAACCTTTCTTACAATGTTCTGAGTTTTCTAAAATCTGCAATTTACAGATTTTAAATCTGTAGCCCCATAA-AAACCTGTGAG----------------------------------GACAAAACTGATCTCTTTATCTCATT-CACAAGGTCAAGCTTAGAACCCAGGTTTCCCAATCTATTCAAAGCACTTTTCCCA---TTGTACCTCTTACAAAGGTCCTAA-G--------AAGGGTCTGAAGAGGCTGAGAGATCT-ATACCTCGTTGTTTGGCCAGCCACTGAGTC-AAGTAGAGCATAAAGGAAA---CACCTTTACCAGAACCTGGC---TT-ACCAGTCAGGCTACTGCACTAGCTGGCCAATTGCAAACATACACTCCTGAGAGCTCCTCTCTCATT-AATCATGGGTCCTTTCCCTTA---ATTCAACA-AGCCAGCATTAGTTGAAAAATACTTTCCTg
i otoGar3.GL873530          C 0 I 3149
s dasNov3.JH570731            1928711 723 +   3943991 ATTTTCTT-AGGTGACAATGTTATTTTTGGTCAGAAGCTACAAGTTCAGGTAATTT-TTAAGGCTCTTTGT-GAAGACAACATATACAGATTTATTCTCGCATAAACTACAAG-GTTGGCTTTTCTG--------------------------CAGGCCTGGTCTATAGGAGTTCATGCTGGAGGAACCCAG-AAAATATGCTGTCTGCTATATACATCAGGCATCCCTGCTTCACTAACTCAAGACCCAGGGCCCCTAGTCCTGAGTGGACA-TCTCAGGTAGGAGGCAGAGGAGGGCTGGCCACGCA--GTCGGG---GTTAGGTATGTGAGAAGGGCTT-AGAACACCAGCTACC--TAACAGGAATCCTTCTAACAATCTCTTAGGGTCctttacaactgtag--tactgttttt-cgtctg-agctccagaagaaccctgtaaggcaagttgggtaggaatcaccctgttctacagttgagaaaactgaCCTCTTTA----ACTGCTCA------------------AGGTTTCCCAATTTCTTCAAGG---CATGCCTCCCACTGTACCTCCTG-GGATGT----A-TGCCTTGAGTA-------------CCAAGAAGTCTAATAACTTGTAGTC----AGGCTGGTCA-------CAGAGCAT---GGCAA---------TACCAGGTCCTGACATCTTAACCAGTGTGGTCAATGGGCTCCCTAGCCAACGGGAGACTGACACTCCTCAAAGTTCCTCTC--ACC-AATCACA-GTCCTTTCCCTCAGACAGTTCTACAACCTCACAATACCTGAAAAATATTTTCCTA
i dasNov3.JH570731          I 361 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I

a score=634877.000000
s hg38.chr15_KI270850v1_alt    413862 58 +    430880 TAAACTAGAAAAGTTTCCAGCATCTCTGAAACAACCCAGTGAGG-TTTAAGTCATTGTT
s panTro5.chr15              63566308 58 +  83230942 TAAACTAGAAAAGTTTCCAGCATCTCTGAAACAACCCAGTGAGG-TTTAAGTCATTGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80523555 58 +  99763055 TAAACTAGAAAAGTTTCCAGCATCTCTGAAACAACCCAGTGAGG-TTTAAGTCATTGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       123448 58 -   1709092 TAAACTAGAAAAGTTTCCAGCATCTCTGAAACAACCCAGTGAGG-TTTAAGTCATTGTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17285466 52 - 121039945 TAAACTAGAAAAGTTTCCAGCATCTCTGAAACAACCCAGTGAGG-TTTAAGTC------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60959410 58 + 169600520 TAAACTAGAAAAGTTTCCAGCATCTCTGAAACAACCCAGTGAGG-TTTAAGCCATTGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108486150 58 - 171882078 TAAACTAGAAAAGTTTCCAGCATCTCTGAAACAACCCAGTGAGG-TTTAAGCCATTGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       102692 58 -   2311642 TAAACTAGAAAAGTTTCCAGCATCTCTGAAACAACCCAGTGAGG-TTTAAGCCATTGTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        94739 58 -   1987038 TAAACTAGAAAAGTTTCCAGCATCTCTGAAACAACCCAATGAGG-TTTAAGCCATTGTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21176127 58 -  24206276 TAAACTAGAAAAGTTTCCAGCATCTCTGAAACAACCCAGTGAGG-TTTAAGCCATTGTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       118019 58 -   1397330 TAAACTAGAAAAGTTTCCAGCATCTCTGAAACAACCCAGTGAGG-TTGAAGCCATTGTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       115758 58 -   1784207 TAAGCTAGAAAAGTTTCCAGCATCTCTGAAACAACCCAGTGAGG-TTTAAGCCATTGTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22322836 58 + 158406734 TAAACTAGAAAAGTTTCCAGCATCTCTGAAGCAACTCAGTGAGG-TTTAAGCCATTGTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50549993 58 +  54856640 TAAACTAGAAAAGTTTCCAGCATCTCTGAAGCATCTCAGTGAGG-TTTAAACCATTGTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       700712 56 -   2910086 TAAACTAGAAAAGTTTCCGGCATCTCTGAAGCAACTCAGTGAG---TTAAGCCATTGCT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40721697 58 +  42888418 CAAACTAGAAAAGTTTTCAGCATCTCTGAAGCAACTCAGTGAGG-TTTAAGCCATTGTT
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1929434 58 +   3943991 TAAACTAGGAAAGTTTCTGGTATGTCTCAAGCA-CTCAGTGAGGATTTAAGCCACTGTT
i dasNov3.JH570731          C 0 I 1
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=2852537.000000
s hg38.chr15_KI270850v1_alt    413920 320 +    430880 GAATTGTTGAGTGTCATACtttttttttttttggcagaggtgggcaggggtcctgctctgtcacccaggctg--tagtacagtgccacaaccacagttcaccgcagtctcgacctcccaggctcaagtgatcctcccactt--caccctccaagtagctgcaactaggtgcacacc-ccacatctggctaatttttcta-tttttttgtaaacggggtttcaccatgttgcccaggctggtctcaaactcctggcttcaagtgatccacctgctccagccttaattaca-ggcttaagtcaccatgcctggccTGTCATTCTTACTG
s panTro5.chr15              63566366 317 +  83230942 GAATTGTTGAGTGTCATACTTTTTTTTTT---GGCAGAGGTGGGCAGgggtcctgctctgtcacccaggctg--tagtacagtgccacgaccacagttcactgcagcctcgacctcccaggctcaactgatcctcccactt--caccctccaagtagctgcaactaggtgcacacc-ccacatctggctaatttttcta-tttttttgtaaacgggatttcaccatgttgcccaggctggtctcaaactcctggcttcaagtgatccacctgctccagccttaattaca-ggcttaagtcaccatgcctggccTGTCATTCTTACTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80523613 317 +  99763055 GAATTGTTGAGTGTCATACTTTTTTTT-----GGCAGAGGTGGGCAGgggtcctgctctgtcacccaggctg--tagtacagtgccacgaccacagttcactgcagcctcgacctcccaggctcaactgatcctcccacttcacaccctccaagtagctgcaactaggtgcacacc-ccacatctggctaatttttcta-tttttttgtaaacgggatttcaccatgttgcccaggctggtctcaaactcctggcttcaagtgatccacctgctccagccttaattaca-ggcttaagtcaccatgcctggccTGTCATTCTTACTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       123506 316 -   1709092 GAATTGTTGAGTGTCATACtttttttttt---ggcggaggtggg-aagggtcctgctctgtcacccaggctg--tagtacagtgccatgaccacagttcactgcagcctcgacctcccaggctcaagtgatcctcccactt--caccctccaagtagctgcaactaggtgcacacc-ccacatctggctaatttttcta-tttttttgtaaacggggtttcaccatgttgcccaggctggtctcaaactcctggcttcaagtgatccacctgctccagccttaattaca-ggcttaagtcaccatgcctggccTGTCATTCTTACTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17285518 319 - 121039945 --ATTGTTGAGTGTCATAttttttttttttttggcagaggtgggcaggggtcctgctctgtcacccaggctg--tagcacagtgccacgaccacagttcactgtagcctcgacctcccaggctcaagtgatcctcccacct--caccctccaagtagctgcaactaggtgcacacc-ccacatccggctaatttttctattttttttgtagacggggtttcaccatgttgcccaggctggtctcaaactcctggcttcaagtgatccacctgctccagccttaattaca-ggcttaagtcaccacacttggccTGTCATTCTTACTG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60959468 321 + 169600520 GAATTGTTGAGTGTCATGCTTTTATTTTTT--GGTGGAGGTGGGCAGgggtcctgttctgtcacccaggctgtatagtacagtggcacaaccacggttcactgcagcctcgacctcccagactcaagtgatcttcccacct--cattctccaagtagctgcaactaggtgcacaca-ccacattctgctaatttttctattttttttgtagacagggtttcactatgttgcccaggttggtctcgaactcctggcttcaagtgatccacctgctccagcctcaattaca-ggtttaagtcatcatgcctggccTGTCATTCTTACTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108486208 321 - 171882078 GAATTGTTGAGTGTCATGCTTTTATTTTTT--GGTGGAGGTGGGCAGgggtcctgttctgtcacccaggctgtatagtacagtggcacaaccacggttcactgcagcctcgacctcccagactcaagtgatcttcccacct--cattctccaagtagctgcaactaggtgcacaca-ccacattctgctaatttttctattttttttgtagacagggtttcactatgttgcccaggttggtctcgaactcctggcttcaagtgatccacctgctccagcctcaattaca-ggtttaagtcatcatgcctggccTGTCATTCTTACTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       102750 321 -   2311642 GAATTGTTGAGTGTCATGCTTTTATTTTTT--GGTGGAGGTGGGCAGgggtcctgttctgtcacccaggctgtatagtacagtggcacaaccacggttcactgcagcctcgacctcccagactcaagtgatcttcccacct--cattctccaagtagctgcaactaggtgcacaca-ccacattctgctaatttttctattttttttgtagacagggtttcactatgttgcccaggttggtctcgaactcctggcttcaagtgatccacctgctccagcctcaattaca-ggtttaagtcatcatgcctggccTGTCATTCTTACTG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        94797 321 -   1987038 GAATTGTTGAGTGTCATGCTTTTATTTTTT--GGTGGAGGTGGGCAGgggtcctgttctgtcacccaggctgtatagtacagtggcacaaccacggttcactgcagcctcgacctcccagactcaagtgatcttcccacct--cattctccaagtagctgcaactaggtgcacaca-ccacattctgctaatttttctattttttttgtagacagggtttcactatgttgcccaggttggtctcgaactcctggcttcaagtgatccacctgctccagcctcaattaca-ggtttaagtcatcatgtctggccTGTCATTCTTACTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21176185 321 -  24206276 GAATCGTTGAGTGTCATGCTTTTATTTTTT--GGCGGAGGTGGGCAGgggtcctgttctgtcacccaggctgtatagtacagtggcacaaccacggttcactgcagcctcgacatcccagactcaagtgatcttcccacct--cattctccaagtagctgcaactaggtgcacaca-ccacattccgctaatttttctattttttttgtagacagggtttcaccatgttgcccaggttggtctcgaactcctggcttcaagtgatccacctgctccagcctcaattaca-ggtttaagtcaccatgcctggccTGTCATTCTTACTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       118077 321 -   1397330 GAATTGTTGAGTGTCATGCTTTTATTTTTT--GGTGGAGGTGGGCAGgggtcctgttctgtcacccaggctgtatagtacagtggcacaaccacggttcactgcagcctcgacctcccagactcaagtgatcttcccacct--cattctccaagtagctgcaactaggtgcacaca-ccacattctgctaatttttctattttttttgtagacagggtttcactatgttgcccaggttggtctcgaactcctggcttcaagtgatccacctgctccagcctcaattaca-ggtttaagtcatcatgcctggccTGTCATTCTTACTG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       115816 304 -   1784207 GAATTGTTGAGTGTCATACTTTTATTTTTT--GGTGGAGGTGGGCAGgggtcctgttctgtcacccaggctg--tagtacagtggcacaaccacg--------------ctacctcccagactcaagtgatcttcccacct--cattctccaagtagctgcaactaggtgcacacc-ccacatcccgctaatttttcta-tttttttgtagacagggtttcaccatgttgcccaggttggtctcgaactcctggcttcaagtgatccacctgctccagcctcaattaca-ggtttaagtcaccatgcctggccTGTCATTCTTACTG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22322894 298 + 158406734 GAATTGTTAACTGTTAGGCTTTTTTTCTT---GGAGG----ccgc----------------cacccaggctg--tagtatagtgacatgaccacg-ttcaccgcagccttgacctcccaggctcaagtgattctcccacct--caccctccaagtagctttgactaggtgcacaccaccacaactggctaatttttcta-tttttttgtagatgggggttcaccatgttgcccaggctggtctcaaactactaacttcaagtggcccacctgctccagccttaattacaggggttaagttaccacatctggccTGTCATTCTTACTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50550051 314 +  54856640 GAATTGTTAACTGTTACGCTTTTTTTCTT---GGAGG----GGGCAGGGGTGGTGGCAAgtcacccaggctg--tagtatagtgacacgaccatg-ttcactgcagccttgacctcccaggctcaagtgatccttccacct--caccctccaagtggctgcgactaagtgcacaccaccacatctggctaatttttcta-cttttttgtagatggggtttcaccatgttgcccaagctggtctcgaactcctggcttcaagtggcccaactgctccagccgtaattacaggggttaagtcaccacatctggccTGTCATTCTTACTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       700768 314 -   2910086 GACTTGTTAACTGTTATGCTTTTTTTCTT---GGAGG----GGGCGGGGGTGGCGGCAAgtcacccaggctg--tagtatagtgacacgaccact-ttcactgcagcctcgacctcccaggctcaagtgatcatcccaccc--caccctccaagtagctgtgactaggtgcacaccatcacatctggtcaatttttcta-tttttttgtagatggggtttcaacatgttgcccaggctggtctcgaactcctggcttcaagtggcccaactgctccagccttaattacaggggttaagtcaccacatctggccTGTCATTCTTACTG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40721755 313 +  42888418 GAATTATTAACTGTTATGCTTTTTTTCTT---GGAGG----GGGCGGGGGTGGCGGCAGgtcacccaggctg--tagtatagtgacatgaccacg-ttcactgcagcctcgacctcccaggctcaagtgatcctcccacct--caccctccaactagctgtgactaggtgcacaccaccacatctggctaatttttcta-tttttttgtagatgggatttcatcatgttgcccaggctggtctcgaactcctggcttcaagtggcccacctgctccagcctTAATTACAGGGGTTAAATCACCACATCT-GCCTGTCATCCTTATTG
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1929492   1 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=652665.000000
s hg38.chr15_KI270850v1_alt    414240 65 +    430880 GGACATAATACATGCAATTTTCTCAAAGGAGAAAAACAGAACATGTAT-TAGAACTAAGAAAGATG
s panTro5.chr15              63566683 65 +  83230942 GGACATAATACATGCAATTTTCTCAAAGGAGAAAAACAGAACATGTAT-TAGAACTAAGAAAGATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80523930 65 +  99763055 GGACATAATACATGCAATTTTCTCAAAGGAGAAAAACAGAACATGTAT-TAGAACTAAGAAAGATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       123822 65 -   1709092 GGACAGAATACATGCAATTTTCTCAAAGGAGAAAAACAGAACATGTAT-TAGAACTAAGAAAGATG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17285837 65 - 121039945 GGACATAATACACGCAATTTTCTCAAAGGAGAAAAACAGAACATGTAT-TAGAACTAAGAAAGATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60959789 65 + 169600520 GGACACAATACATGCAATTTTCTCAAAGGAGAAAAAGAGATCATGTAG-TAGAACTAAGAAAGATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108486529 65 - 171882078 GGACACAATACATGCAATTTTCTCAAAGGAGAAAAAGAGATCATGTAG-TAGAACTAAGAAAGATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       103071 65 -   2311642 GGACACAATACATGCAATTTTCTCAAAGGAGAAAAAGAGATCATGTAG-TAGAACTAAGAAAGATG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        95118 65 -   1987038 GGACACAATACATGCAATTTTCTCAAAGGAGAAAAAGAGATCATGTAG-TAGAACTAAGAAAGATG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21176506 65 -  24206276 GGACACAATACATGCAATTTTCTCAAAGGAGAAAAAGAGATCATGTAG-TAGAACTAAGAAAGATG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       118398 65 -   1397330 GGACACAATACATGCAATTTTCTCAAAGGAGAAAAAGAGATCATGTAG-TAGAACTAAGAAAGATG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       116120 65 -   1784207 GGACACAATACATGCAATTTTCTCAAAGGAGAAAAAGAGAACATGTAG-TAGAACTAAGAAAGATG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22323192 61 + 158406734 GGACACAATACATGCAATTTCCTCAAAGGAGAAAAACAGAACATTTAT-TAGAATT--G--AGATG
i calJac3.chr6              C 0 I 312
s saiBol1.JH378108           50550365 63 +  54856640 GGACACAACACATGCAATTTTCTCAAAGGAGAAAAACAGAACATTTAT-TAGAATTAAG--AGATG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       701082 63 -   2910086 GGACACAATACATGCACTTTTCTCAAAGGAGAAAAACAGAGCATTTAT-TAGAATTAAG--AGATG
i cebCap1.NW_016107610v1    C 0 I 325
s aotNan1.NW_018505940v1     40722068 63 +  42888418 GGACACAATACATGCAATTTTCTCAAAGGAGAAAAACAGAACATTTAT-TAGAATTAAG--AGATG
i aotNan1.NW_018505940v1    C 0 I 315
s dasNov3.JH570731            1929493 61 +   3943991 GAATATAATCCA-ACAACTTTCTTAAAGGAGAAAAACAGAACATGTATGTAGAACCAAGCAG----
i dasNov3.JH570731          I 1 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=122408.000000
s hg38.chr15_KI270850v1_alt    414305 10 +    430880 ACTCCCTGAA
s panTro5.chr15              63566748 10 +  83230942 ACTCCCTGAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80523995 10 +  99763055 ACTCCCTGAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       123887 10 -   1709092 ACTCCCTGAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17285902 10 - 121039945 ACTCCCTGAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60959854 10 + 169600520 ACTCCCTGAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108486594 10 - 171882078 ACTCCCTGAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       103136 10 -   2311642 ACTCCCTGAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        95183 10 -   1987038 ACTCCCTGAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21176571 10 -  24206276 ACTCCCTGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       118463 10 -   1397330 ACTCCCTGAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       116185 10 -   1784207 ACTCCCTGAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22323565 10 + 158406734 ACTCCCTGAA
i calJac3.chr6              I 312 C 0
s saiBol1.JH378108           50550428 10 +  54856640 ACTCCCTGAA
i saiBol1.JH378108          C 0 I 319
s cebCap1.NW_016107610v1       701470 10 -   2910086 ACTCCCTGAA
i cebCap1.NW_016107610v1    I 325 C 0
s aotNan1.NW_018505940v1     40722446 10 +  42888418 ACTCCCTGAA
i aotNan1.NW_018505940v1    I 315 C 0
s dasNov3.JH570731            1929554 10 +   3943991 ATTCCCTTAA
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=439263.000000
s hg38.chr15_KI270850v1_alt    414315 50 +    430880 C-TTTTAACTCAGCGTAAAC-TAAAAGAG--AATTGGGCTAG-CTCATGACTTAC
s panTro5.chr15              63566758 50 +  83230942 C-TTTTAACTCAGCGTAAAC-TAAAAGAG--AATTGGGCTAG-CTCATGACTTAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524005 50 +  99763055 C-TTTTAACTCAGCGTAAAC-TAAAAGAG--AATTGGGCTAG-CTCATGACTTAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       123897 50 -   1709092 C-TTTTAACTCAGTGTAAAC-TAAAAGAG--AATTGGGCTAG-CTCATGACTTAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17285912 50 - 121039945 C-TTTTAACTCAGCGTAAAC-TAAAAGAG--AATTGGGCTAG-CTCATGACTTAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60959864 51 + 169600520 C-TTTTAACTCAGCATAACCCTAAAAGAG--AACTGGGTTAG-CTCATGACTTAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108486604 51 - 171882078 C-TTTTAACTCAGCATAACCCTAAAAGAG--AACTGGGTTAG-CTCATGACTTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       103146 49 -   2311642 C-TTTTAACTCAGCATAACCCTAAAAGAG--AACTGGGTTAG-CTCATGAC--AT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        95193 51 -   1987038 C-TTTTAACTCAGCATAACCCTAAAAGAG--AACTGGGTTAG-CTCATGACTTAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21176581 51 -  24206276 C-TTTTAACTCAGCATAACCCTAAAAGAG--AACTGGGTTAG-CTCATGACTTAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       118473 52 -   1397330 CTTTTTAACTCAGCATAACCCTAAAAGAG--AACTGGGTTAG-CTCATGACTTAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       116195 51 -   1784207 C-TTTTAACTCAGCATAACCGTAAAAGAG--AACTGGGTTAG-CTCATGACTTAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22323575 51 + 158406734 -TTTTTAACTCAGTGTAAGT-TAAAAGAG--AACTGAACTAAGCTCATGACTTAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50550757 50 +  54856640 -TTTTTAACTCAGTGTAAGT-TAAAAGGG--AACTGGACTAC-CTCATGACTTAC
i saiBol1.JH378108          I 319 C 0
s cebCap1.NW_016107610v1       701480 50 -   2910086 -TTTTTAACTCAGTGTAACT-TAAAAGAG--AATTGGACTAG-CTCATGACTTAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40722456 50 +  42888418 -TTTTTAACTCAGTGTAAGC-TAAAAGAG--AATTGGACTAG-CTCATGACTTAC
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1929564 48 +   3943991 --TTTTTAC---GGATAAGC-TAAAGGAGCAAAAAGGGTTAG-GTCATGACTTAC
i dasNov3.JH570731          C 0 I 471
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=65520.000000
s hg38.chr15_KI270850v1_alt    414365 6 +    430880 ATTTTT
s panTro5.chr15              63566808 6 +  83230942 ATTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524055 6 +  99763055 ATTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       123947 6 -   1709092 ATTTTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17285962 6 - 121039945 ATTTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60959915 6 + 169600520 ATTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108486655 6 - 171882078 ATTTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       103195 6 -   2311642 ATTTTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        95244 6 -   1987038 ATTTTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21176632 6 -  24206276 ATTTTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       118525 6 -   1397330 ATTTTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       116246 6 -   1784207 ATTTTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22323626 6 + 158406734 ATTTTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50550807 6 +  54856640 ATTTTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       701530 6 -   2910086 ATTTTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40722506 6 +  42888418 ATTTTT
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e dasNov3.JH570731            1929612 471 +   3943991 I
e canFam3.chr3               54475333 4383 +  91889043 I
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=849824.000000
s hg38.chr15_KI270850v1_alt    414371 83 +    430880 CTTTTGTACAAGTCAGAAGAGACAAAAACCACCCCCACCCCCAAGTATG-CCCTTCTCTCATTTGCCTTCCTGTACGACAGAAG-----
s panTro5.chr15              63566814 83 +  83230942 CTTTTGTACAAGTCAGAAGAGACAAAAACCACCCCCACCCCCAAGTATG-CCCTTCTCTCATTTGCCTTCCTGTACGACAGAAG-----
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524061 83 +  99763055 CTTTTGTACAAGTCAGAAGAGACAAAAACCACCCCCACCCCCAAGTATG-CCCTTCTCTCATTTGCCTTCCTGTACGACAGAAG-----
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       123953 83 -   1709092 CTTTTGTACAAGTCAGAAGAGACAAAAACCACCCCCACCCCCAAGTATG-CCCTTCTCTCATTTGCCTTCCTGTACGACAGAAG-----
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17285968 83 - 121039945 CTTTTGTACAAGTCAGAAGACACTAAAACCACCCTCACCCCCAAGTATG-CCCTTCTCTCATTTGCCTTCCTGTACGACAGAAG-----
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60959921 83 + 169600520 CTTTTGTAGAAGTCAAAAGAGACAAAAACTACCCTAACCCCCGAGTATG-CCCTTCTCTCATTTGCCTTCCTGTATGACAAAAG-----
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108486661 83 - 171882078 CTTTTGTAGAAGTCAGAAGAGACAAAAACTACCCTAACCCCCGAGTATG-CCCTTCTCTCATTTGCCTTCCTGTATGACAAAAG-----
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       103201 83 -   2311642 CTTTTGTAGAAGTCAGAAGAGACAAAAACTACCCTAACCCCCGAGTATG-CCCTTCTCTCATTTGCCTTCCTGTATGACAAAAG-----
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        95250 83 -   1987038 CTTTTGTAGAAGTCAGAAGAGACAAAAACTACCCTAACCCCCGAGTATG-CCCTTCTCTCATTTGCCTTCCTGTATGACAAAAG-----
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21176638 83 -  24206276 CTTTTGTAGAAGTCAGAAGAGACAAAAACTACCCTAACCCCCAAGTATG-CCCTTCTCTCATTTGCCTTCCTGTATGACAAAAG-----
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       118531 83 -   1397330 CTTTTGTAGAAGTCAGAAGAGACAAAAACTACCCTAACCCCCGAGTATG-CCCTTCTCTCATTTGCCTTCCTGTATGACAAAAG-----
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       116252 83 -   1784207 CTTTTGTAGAAGTCAGAAGAGACAAAAACTACCCTAACCCCCGAGTATG-CCCTTATCTCATTTGCCTTCCCGTACGACAAAAG-----
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22323632 84 + 158406734 CTATTGTAGAAGTCAGAGGAGACAAAAACTACCCATAACCCCAAGTATACCCCTTCTCTCATCTGCTTTCCTGTACAACAGAAA-----
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50550813 83 +  54856640 CTTTTGTAGAAGTCAGAAGAGACAAAAACTACCCACAACCCCAAGTATA-CCCTTCTCTCATTTGCTTTCCTGTACAACAGAAA-----
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       701536 83 -   2910086 CTTTTGTAGAAGTCAGAAGAGACAAAAACTACCCACAACCCCAAGTATA-CCCTTCTCTCATTTGCTTTCCTGTACAACAGAAA-----
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40722512 83 +  42888418 CTTTTGTAGAAGCCAGAAGAGACAAAAACTACCCACAACCCCAAGTATA-CCCTTCTCTCATTTGCTTTCCTGTACAACAGAAA-----
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1930083 76 +   3943991 CTTTTTTGGAAGTTAGAAGAGACAAG----------ATCCCCA--TATG-CCCTTTTCTCATTTGCCCTCCACTACAATTTAATAGAAT
i dasNov3.JH570731          I 471 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e canFam3.chr3               54475333 4383 +  91889043 I
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=41072.000000
s hg38.chr15_KI270850v1_alt    414454 3 +    430880 CAA
s panTro5.chr15              63566897 3 +  83230942 CAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524144 3 +  99763055 CAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       124036 3 -   1709092 CAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17286051 3 - 121039945 CAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60960004 3 + 169600520 CAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108486744 3 - 171882078 CAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       103284 3 -   2311642 CAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        95333 3 -   1987038 CAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21176721 3 -  24206276 CAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       118614 3 -   1397330 CAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       116335 3 -   1784207 CAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22323716 3 + 158406734 CAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50550896 3 +  54856640 CAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       701619 3 -   2910086 CAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40722595 3 +  42888418 CAA
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54479716 3 +  91889043 CAG
i canFam3.chr3              I 4383 C 0
s dasNov3.JH570731            1930159 3 +   3943991 CAA
i dasNov3.JH570731          C 0 I 426
e mm10.chr7                  81404089 30523 + 145441459 I
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=316813.000000
s hg38.chr15_KI270850v1_alt    414457 32 +    430880 ATGCCACAAGTTAGTCACTCCCTTAATATGCC
s panTro5.chr15              63566900 32 +  83230942 ATGCCACAAGTTAGTCACTCCCTTAATATGCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524147 32 +  99763055 ATGCCACAAGTTAGTCACTCCCTTAATATGCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       124039 32 -   1709092 ATGCCACAAGTTAGTCACTCCCTTAATATGCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17286054 31 - 121039945 ATGCCACAAGTTAGTCACTCCCTTAATATG-C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60960007 32 + 169600520 ATGCTACAAGTTACTCTCTTCCTTAATAAGCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108486747 32 - 171882078 ATGCTACAAGTTACTCTCTTCCTTAATAAGCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       103287 32 -   2311642 ATGCTACAAGTTACTCTCTTCCTTAATAAGCC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        95336 32 -   1987038 ATGCTACAAGTTACTCTCTTCCTTAATAAGCC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21176724 32 -  24206276 ATGCTACAAGTTACTCTCTTCCTTAATAAGCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       118617 32 -   1397330 ATGCTACAAGTTACTCTCTTCCTTAATAAGCC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       116338 32 -   1784207 ATGCTACAAGTTACTTTCTTCCTTAATAAGCC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22323719 32 + 158406734 ATGGCACAAGTTAGTTTCTCCCTTAATATGCC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50550899 32 +  54856640 ATGCCACAAGTTAGTTTCTCCCTTAATATGCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       701622 32 -   2910086 ATGCCACAAGTTAGTTTCTCCCTTAATATGCC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40722598 32 +  42888418 ATGCCACAAGTTAGTTTCTCCCTTAATAGGCC
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54479719 32 +  91889043 TTACCAAAAGTCAATCTTGTTTGTAATAAAAT
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1930588 29 +   3943991 ATGCCACAAGACACTCT---TCTTAATAAGTC
i dasNov3.JH570731          I 426 C 0
e mm10.chr7                  81404089 30523 + 145441459 I
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=1387629.000000
s hg38.chr15_KI270850v1_alt    414489 117 +    430880 TCTCCCTCAAACATTACGCTATTTACTGCTCACAT-ACTCCTGCATTTTTGTGGGAATTATTTCTAACGCCAAGTTAAAAAAATAAATAAAAGAATTTACAACTAAA-AACAGTagttg
s panTro5.chr15              63566932 116 +  83230942 TCTCCCTCAAACATTACGCTATTTAATGCTCACAT-ACTCCTGCATTTTTGTGGGAATTATTTCTAACGCCAAGTTAAAAAA-TAAATAAAAGAATTTACAACTAAA-AACAGTagttg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524179 116 +  99763055 TCTCCCTCAAACATTACGCTATTTAATGCTCACAT-ACTCCTGCATTTTTGTGGGAATTATTTCTAACGCCAAGTTAAAAAA-TAAATAAAAGAATTTACAACTAAA-AACAGTagttg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       124071 116 -   1709092 TCTCCCTCAAACATTATGCTATTTAATGCTCACAT-ACTCCTGCATTTTTGTGGGAATTATTTCTAATGCCAAGTTAAAAAA-TAAATAAAAGAATTTACAACTAAA-AACAGTagctg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17286085 116 - 121039945 TCTCCCTCAAACATTAAGCTATTTAATGCTCACAT-ACTCCTGCATTTTTGTGGGAATTATTTCTAAGGCCAAGTTAAAAAA-TAAATAAAAGAATTTACAACTAAA-AACAGTagttg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60960039 116 + 169600520 TCTCCCTCAAACATTAAGCTATTTAATGCTCACAT-ACTCCTACATTTTTGTGGGAATTATTTCTAAGGCCAAACTAAAAAA-TAAATAAAAGAATTTACAACTAAA-AACAGTagttg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108486779 116 - 171882078 TCTCCCTCAAACATTAAGCTATTTAATGCTCACAT-ACTCCTACATTTTTGTGGGAATTATTTCTAAGGCCAAGCTAAAAAA-TAAATAAAAGAATTTACAACTAAA-AACAGTCgttg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       103319 116 -   2311642 TCTCCCTCAAACATTAAGCTATTTAATGCTCACAT-ACTCCTACATTTTTGTGGGAATTATTTCTAAGGCCAAGCTAAAAAA-TAAATAAAAGAATTTACAACTAAA-AACAGTagttg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        95368 116 -   1987038 TCTCCCTCAAACATTAAGCTATTTAATGCTCACAT-ACTCCTACATTTTTGTGGGAATTATTTCTAAGGCCAAGCTAAAAAA-TAAATTAAAGAATTTACAACTAAA-AACAGTagttg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21176756 117 -  24206276 TCTCCCTCAAACATTAAGCTACTTAATGCTCACATAACTCCTACATTTTTGTGGGAATTATTTCTAAGGCCAAGCTAAAAAA-TAAATAAAAGAATTTACAACTAAA-AACAGTagttg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       118649 116 -   1397330 TCTCCCTCAAACATTAAGCTATTTAATGCTCACAT-ACTCCTACATTTTTGTGGGAATTATTTCTAAGGCCAAGCTAAAAAA-TAAATAAAAGAATTTACAACTAAA-AACAGTagttg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       116370 116 -   1784207 TCTCCCTCAAACATTAAGCTCTTTAATGTTCACAT-ACTCCTACATTTTTGTGGGAATTATATCTAAGGCCAAGCTAAAAAA-TAAATAAAAGAATTTACAACTAAA-AACAGTagctg
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22323751 116 + 158406734 TCTCCTTCAAACATTAAGATATTTAATGCTCACAT-ACTCCTGCATTGTTGTGGGAATTATTTTCAAGGCCAAGCTAAAAAA-CAAATGAAAGAATTTACAACTACA-AACAGTagttg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50550931 113 +  54856640 TCTCCCTCAAACATTAAGATATTTAATACTCACAT-ACTTCTCAA---TTGTGGGAATTATTTCCAGGCCCAAGCtaaaaaa-taaattaaaaaatttaCAACTACA-AACAGTagttg
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       701654 116 -   2910086 TCTCCCTCAAACATTAAGATATTTAATGCTCACAT-ACTGCTGCATTGTTGTGGGAATTATTTCCAAGCCCAAGCTAAAAAA-TAAATGAAAGAATTTACAACTACA-AACAGTagttg
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40722630 116 +  42888418 TCTCCCTCAAACATTAAGATATTTAATGCTCATAT-ACTCCTGCATTGTTGTGGGAATTATTTCCAAGTCCAAGCTAAAAAA-TAAATGAAAGAATTTACAACTACA-AACAGTagttg
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81434612 112 + 145441459 TTTCCTCCAAATGTTTAGCTACTTAATGTTCATGG-GC-CCTACATCTTCGTGGGAATTATTTCCAACACTA----AAAAGT-TAAATCACAGATTTTATAACTAAAGAACAGTACTTG
i mm10.chr7                 I 30523 C 0
s canFam3.chr3               54479752 117 +  91889043 TCTCCCTCAGATGTTTAGCTACTTTATGTTCACAT-ACACCTGTATCCTTATGAGAACTATTTCCAACATCAAGTTAGGAAG-CAAATCAAAGAATTTATGATGAAAAAACAGCAATTA
i canFam3.chr3              I 1 I 4
s dasNov3.JH570731            1930617 109 +   3943991 ------TCAAACATTTAGCTACTTAATGTTTACAA-ATCTCCACCTCCGCCTCGGAATTATTTCCAAGGCCATGtttttaaa---aatcaaaaaatttataactaaaaaataGCAATTA
i dasNov3.JH570731          C 0 C 0
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=29223.000000
s hg38.chr15_KI270850v1_alt    414606 2 +    430880 tc
s panTro5.chr15              63567048 2 +  83230942 tc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524295 2 +  99763055 tc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       124187 2 -   1709092 tc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17286201 2 - 121039945 tc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60960155 2 + 169600520 tc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108486895 2 - 171882078 tc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       103435 2 -   2311642 tc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        95484 2 -   1987038 tc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21176873 2 -  24206276 tc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       118765 2 -   1397330 tc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       116486 2 -   1784207 tc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22323867 2 + 158406734 tc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50551044 2 +  54856640 tc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       701770 2 -   2910086 tc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40722746 2 +  42888418 tc
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54479873 2 +  91889043 TC
i canFam3.chr3              I 4 C 0
s dasNov3.JH570731            1930726 2 +   3943991 TC
i dasNov3.JH570731          C 0 I 86
e mm10.chr7                  81434724 0 + 145441459 C
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=38352.000000
s hg38.chr15_KI270850v1_alt    414608 3 +    430880 ctt
s panTro5.chr15              63567050 3 +  83230942 ctt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524297 3 +  99763055 ctt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       124189 3 -   1709092 ctt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17286203 3 - 121039945 ctt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60960157 3 + 169600520 ctt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108486897 3 - 171882078 ctt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       103437 3 -   2311642 ctt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        95486 3 -   1987038 ctt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21176875 3 -  24206276 ctt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       118767 3 -   1397330 ctt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       116488 3 -   1784207 ctt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22323869 3 + 158406734 ctt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50551046 3 +  54856640 ctt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       701772 3 -   2910086 ctt
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40722748 3 +  42888418 ctt
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54479875 3 +  91889043 CTT
i canFam3.chr3              C 0 I 75
e mm10.chr7                  81434724 0 + 145441459 C
e dasNov3.JH570731            1930728 86 +   3943991 I
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=2261826.000000
s hg38.chr15_KI270850v1_alt    414611 233 +    430880 tggtatatgtagggaattggttccaggacccccagagtataccaaaatccgcacatactcaagtcttgcagttggtcctgaggaacccacctataccagaaaagtcagccctccatacgtgtgggttttacatcccttgaataccacattttccagctttggttgaaaaacatctgcatgtaagtggacctgcacagtccaacgtagtgttgctcaagggttgactgTAATTA
s panTro5.chr15              63567053 233 +  83230942 tggtatatgtagggaattggttccaggacccccagagtataccaaaatccgcacatactcaagtcttgcagttggtcctgaggaacctacctataccagaaaagtcagccctccatatgtgtgggttttacatcccttgaataccacattttccagctttggttgaaaaacatctgcatataagtggacctgcacagtccaacgtagtgttgttcaagggttgactgTAATTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524300 233 +  99763055 tggtatatgtagggaattggttccaggacccccagagtataccaaaatccgcacatactcaagtcttgcagttggtcctgaggaacctacctataccagaaaagtcagccctccatatgtgtgggttttacatcccttgaataccacattttccagctttggttgaaaaacatctgcatataagtggacctgcacagtccaacgtagtgttgttcaagggttgactgTAATTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       124192 233 -   1709092 tggtatatgtagggaattggttccaggacccccagagtataccaaaatccgcacatactcaagtcttgcagttggtcctgaggcacccacctataccagaaaagtcagccctccatacgtgtgggttttacatcccttgaataccacattttccagctttggttgaaaaacatctgcatataagtggaccttcacagtccaatgtagtgttgttcaagggttgactgTAATTA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17286206 229 - 121039945 tggtgtatgtagggaattggttccaggacccctaaagtataccaaaatccgc----actcaagtctcgcagttggtcctgaggaacccacctataccagaaaagtcagccctccacacatgtgggttttacatcccttgaataccacattttccagctttggttgaaaaacatctgcatataagtggacttgcacagttcaatgtagtgttgttcaagggtcgactgTAATTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60960160 233 + 169600520 tggtgtatgtagggaattggttccaggacccctacagtataccaaaatccacacatactcaagtctcacagttggttctgaggaacccacctataccagaaaagtcagccctccatatatgtgggttttacatcccttgaatatcacattttccagctttggttgaaaaacatctgcatataagtggacctgcacagttcaaagtagtgttgctcaagggtcgactgTAATTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108486900 233 - 171882078 tggtgtatgtagggaattggttccaggacccctacagtataccaaaatccacacatactcaagtctcacagttggttctgaggaacccacctataccagaaaagtcagccctccatatatgtgggttttacatcccttgaatatcacattttccagctttggttgaaaaacatctgcatataagtggacctgcacagttcaaagtagtgttgctcaagggtcgactgTAATTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       103440 233 -   2311642 tgatgtatgtagggaattggttccgggacccctacagtataccaaaatccacacatactcaagtctcacagttggttctgaggaacccacctataccagaaaagtcagccctccatatatgtgggttttacatcccttgaatatcacattttccagctttggttgaaaaacatctgcatataagtggacctgcacagttcaaagtagtgttgctcaagggtcgactgTAATTA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        95489 233 -   1987038 tggtgtatgtagggaattggttccgggacccctacagtataccaaaattcacacatactcaagtctcacagttggttctgaggaacccacctataccagaaaagtcagccctccatatatgtgggttttacatcccttgaatatcacattttccagctttggttgaaaaacatctgcatataagtggacctgcacagttcaaagtagtgttgctcaagggtcgactgTAATTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21176878 233 -  24206276 tggtgtatgtagggaattggttccgggacccctacagtatactaaaatccacacatactcaagtctcacagttggttctgaggaacccacctataccagaaaagtcagccctccatatatgtaggttttacatcccttgaatatcacattttccagctttggttgaaaaacatctgcatataagtggacctgcacagttcaaagtagtgtagctcaagggtcgactgTAATTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       118770 233 -   1397330 tggtgtatgtagggaattggttccgggacccctacagtataccaaaatccacacatactcaagtctcacagttggttctgaggaacccacctataccagaaaagtcagccctccatatatgtgggttttacatcccttgaatatcacattttccagctttggttgaaaaacatctgcatataagtggacctgcacagttcaaagtagtgttgctcaagggtcgactgTAATTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       116491 233 -   1784207 tggtgtatgtagggaattggttccgggacccctagagtataccaaaatccacacatactcaagtctcacagttggttctgaggaacccacctataccagaaaagtcagccctccatatatgtgggttttacatcccttgaataccacattttccagctttggttgaaaaacatctgcatataagtggacctgcagagttcaaagtagtgttgctcaagggtcgactgTAATTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22323872 225 + 158406734 tggtgtatgtagggatttggttctaggacccttagaatataccaaaatctgcacatactcaagtcttgcagttggtcctgaggaacccacttacaccagaaaagtcagccctccatatatgtgggttttacatcccttgaataccatattttccatct----ttgaaaaac--gtgcagaaacgtgaacctgcacagttcaaaataatgtcattcaagggtcgac--tgATTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50551049 227 +  54856640 tggtgtatgtagggaattggttccaggacccttacagtataccaaaatccacacatactcaagtctcgcagttggtcctgaggaacccacttataccagaaaagtcagtcctccatgtatgtgggttttacatcccttgaataccgtattttccatct----ttgaaaaacatgtgcataaatgtggacctgcacagttcagaataatgttgttcaagggttgac--tAATTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       701775 227 -   2910086 tggtgtatgtagagaattggttccaggacccttagagtataccaaaatccacatatactcaagtcttgcagttggtcctgaggaacccacttataccagaaaagtcagccctccatgtatgtaggtttcacatcccttgaatactgtattttccatct----ttgaaaaacatgtgcataaacgtggacctgcacagttcaaaataatgttgttcaagggtcgac--tAATTA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40722751 225 +  42888418 tgctgtatgtagggaactggttccaggacccttagagtataccaaaatctgcacacactcaagtctcacagttggtcc--aggaacccacttatatcagaaaagtcagccctccatatatgtgggttttacatcccttgaataccgtattttccatct----ttgaaaaaaatgtgcataaacgtggacctgcacagttcaaaataatgttgttcaagtgtcgac--tAATTA
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81434724   0 + 145441459 C
e dasNov3.JH570731            1930728  86 +   3943991 I
e canFam3.chr3               54479878  75 +  91889043 I
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=988538.000000
s hg38.chr15_KI270850v1_alt    414844 97 +    430880 TCAGTCCTTGTTTTGAGAATCCCCATTGTGGCTAATTGTTTTCAAGGTCCATTTT-TAAAAATTAAACA-TATATTCTTTCATCTAAAACAACTGAAAC
s panTro5.chr15              63567286 97 +  83230942 TCAGTCCTTGTTTTGAGAATCCCCATTGTGGCTAATTGTTTTCAAGGTCCATTTT-TAAAAATTAAACA-TATATTCTTTCATCTAAAACAACTGAAAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524533 97 +  99763055 TCAGTCCTTGTTTTGAGAATCCCCATTGTGGCTAATTGTTTTCAAGGTCCATTTT-TAAAAATTAAACA-TATATTCTTTCATCTAAAACAACTGAAAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       124425 97 -   1709092 TCAGTCCTTGTTTTGAGAATCCCCATTGTTGCTAATTGTTTTCAAGGTCCATTTT-TAAAAATTAAACA-TATATTCTTTCATCTAAAACAACTGAAAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17286435 97 - 121039945 TCAGTCCTTGTTTTGAGAATCCCCATTGTTGCTAATTGTTTTCAAGGTCCATTTT-TAAAAATTAAACA-TATATTCTTTCATCTAAAACAACTGAAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60960393 97 + 169600520 TCAGTCCTTGGTTTGAGAATCCCCATTGTTGCTAATTGTTTTCAAGGTCCATTTT-TAAAAATTAAAAA-TACATTCTTTCATCTAAAATAACTCAAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108487133 97 - 171882078 TCAGTCCTTGGTTTGAGAATCCCCATTGTTGCTAATTGTTTTCAAGGTCCATTTT-TAAAAATTAAAAA-TACATTCTTTCATCtaaaataactcaaac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       103673 97 -   2311642 TCAGTCCTTGGTTTGAGAATCCCCATTGTTGCTAATTGTTTTCGAGGTCCATTTT-TAAAAATTAAAAA-TACATTCTTTCATCtaaaataactcaaac
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        95722 97 -   1987038 TCAGTCCTTGGTTTGAGAATCCCCATTGTTGCTAATTGTTTTCAAGGTCCATTTT-TAAAAATTAAAAA-TATATTCTTTCACCtaaaataactcaaac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21177111 97 -  24206276 TCAGTCCTTGGTTTGAGAATCCCCATTGTTGCTAATTGTTTTCAAGGTCCATTTT-TAAAAATTAAAAA-TATATTCTTTCATCTAAAATAACTCAAAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       119003 97 -   1397330 TCAGTCCTTGGTTTGAGAATCCCCATTGTTGCTAATTGTTTTCAAGGTCCATTTT-CAAAAATTAAAAA-TATATTCTTTCACCtaaaataactcaaac
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       116724 97 -   1784207 TCAGTCCTTGTTTTGAGAATCCCCATTGTTGCTAATTGTTTTCAAGGTCCATTTT-TAAACATTAAAAA-TATATTCTTTCATCTAAAATAACTCAAAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22324097 98 + 158406734 TCAGCCTTTGTTTTGAGAATTGCCATTGTTGCTAATTTTTTTCAAGGTCCatttt-taaatattaaaaattatattCTTTCATGTAAAATAACTCAAAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50551276 97 +  54856640 TCAGTCTTTGTTTTGAGAACTG-CATTGTTGCTAATTTTTTTCAAGGTCCatttt-taaatattaaaaattatattCTTTCATCTAAAATAACTCAAAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       702002 98 -   2910086 TCAGTCTTTGTTTTGAGAATTGCCATTGTTGCTAATTTTTTTCAAGGTCCATTTT-TAAATATTAAAAATTATATTCTTTCATCTAAAATAACTCAAAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40722976 98 +  42888418 TCAGTCTTTGTATTGAGAATTGCCATTGTTGCTAATTTTTTTCAAGGTCCATTTT-TAAATATTAAAAATTATATTCTTTCATCTAAAATAACTCAAAA
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81434724 91 + 145441459 CCAGTCATT---CTGGGAAATC----TGTTGCTATTTTTTTTCAAAGCCCATTCTAAAAAAATTAAAAA-TGTAATCTTTCTTCTAAAATGACCCAAGC
i mm10.chr7                 C 0 C 0
e dasNov3.JH570731            1930728 86 +   3943991 I
e canFam3.chr3               54479878 75 +  91889043 I
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=1368142.000000
s hg38.chr15_KI270850v1_alt    414941 137 +    430880 Aggccaggcacagtggctcgtgcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgacgtcaggagtttgagaccagcctggccaacatggcgaaaccccatctctactaaaaatacaaaaaatt
s panTro5.chr15              63567383 137 +  83230942 Aggccaggcacagtggctcgcgcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgacgtcaggcgtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaatt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524630 137 +  99763055 Aggccaggcacagtggctcgcgcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgacgtcaggcgtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       124522 137 -   1709092 Aggccaggcacagtggctcgcgcctataatcccagcactttgggaggccgaggcgggtggatcacctgacgtcaggagtttgagaccagcctggccaacatggcgaaaccccatctctactaaaaatacaaaaaatt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17286532 137 - 121039945 Aggccaggcacagtggctcacgcctgtaatctcagcactttgggaggccgaggtgggtggatcacctgacgtcaggagtttgagaccagcctggccaacatgacgaaaccccatctctaccaaaaatacaaaaaatt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60960490 137 + 169600520 Aggccaggcacagtggctcacacctgtaatcccagcactttgggaggccgaggtgggtggatcacctaaagtcaggagtttgagaccagcctgcccaacagggtgaaaccccatgtctactaaaaatacaaaaaatt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108487230 137 - 171882078 aggccaggcacagtggctcacacctgtaatcccagcactttgggaggccgaggtgggtggatcacctaaagtcaggagtttgagaccagcctgcccaacagggtgaaaccccatgtctactaaaaatacaaaaaatt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       103770 137 -   2311642 aggccaggcacagtggctcacacctgtaatcccagcactttgggaggccgaggtgggtggatcacctaaagtcaggagtttgagaccagcctgcccaacagggtgaaaccccatgtctactaaaaatacaaaaaatt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        95819 137 -   1987038 aggccaggcacagtggctcacacctgtaatcccagcactttgggaggccgaggtgggtggatcacctaaagtcaggagtttgagaccagcctgcccaacagggtgaaatcccatctctactaaaactacaaaaaatt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21177208 137 -  24206276 Aggccaggcacagtggctcacacctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaagtcaggagtttgagaccagcctgcccaacagggtgaaaccccatctctactaaaaatacaaaaaatt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       119100 137 -   1397330 aggccaggcacagtggctcacacctgtaatcccagcactttgggaggccgaggtgggtggatcacctaaagtcaggagtttgagaccagcctgcccaacagggtgaaaccccatctctactaaaactacaaaaaatt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       116821 137 -   1784207 Aggccaggcacagtggctcacacctgtaatcccagcattttgggaggccgaggtgggtggatcacctgaagtcaggagtttgagaccagcctgcccaacagggcaaaaccccatctctactaaaaatacaaaaaatt
i colAng1.NW_012117110v1    C 0 I 305
s calJac3.chr6               22324195 134 + 158406734 Aggccaggagca---gatcacacctgtaatcccagcactttgggaggccaaggtaggtggatcacctgaggttaggagtttgagactagcctggccaacatggtgaaaccctgtctctactaaaaacacaaaaaatt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50551373 137 +  54856640 Aggccaggcgcagtggctcacacctgtaatcccagcactttgggaggccaaggtaggtggatcacctgaggttaggagtttgagactaacctggccaacatggtgaaaccctgtctctaataaaaatacaaaaaatt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       702100 135 -   2910086 Aggccaggcacagcagctcacacctgtaatcccagcactttgggaggccatggtaggtggatcacctgaggttaggagtttgagactagcctggccaacatggtgaaactttgtctctactaaaa--acaacaaatt
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40723074 137 +  42888418 Aggtcaggcgcagcagctcacacttgtaatcccagcactttgggaggccaaggtaggtggatcacctgaggttaggagtttgagactagcctggccaacatggtgaaaccctgtctctactaaaaacacaaaaaatt
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81434815   0 + 145441459 C
e dasNov3.JH570731            1930728  86 +   3943991 I
e canFam3.chr3               54479878  75 +  91889043 I
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=148360.000000
s hg38.chr15_KI270850v1_alt    415078 16 +    430880 agccaggtgtggtggc
s panTro5.chr15              63567520 16 +  83230942 agccaggtgtggtggc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524767 16 +  99763055 agccaggtgtggtggc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       124659 16 -   1709092 agccaggtgtggtggc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17286669 16 - 121039945 agccaggtgtggtggt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60960627 16 + 169600520 agccaggtgtggtggc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108487367 16 - 171882078 agccaggtgtggtggt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       103907 16 -   2311642 agccaggtgtggcggc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        95956 16 -   1987038 agccaggtgtggtggc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21177345 16 -  24206276 agccaggtgtggtggc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       119237 16 -   1397330 agccaggtgtggtggc
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22324329 16 + 158406734 agccaggcgtggtggc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50551510 16 +  54856640 aggcaggcgtggtggc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       702235 16 -   2910086 agccaggcgtggtggt
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40723211 16 +  42888418 agccaggcgtggtggc
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81434815  0 + 145441459 C
e dasNov3.JH570731            1930728 86 +   3943991 I
e canFam3.chr3               54479878 75 +  91889043 I
e otoGar3.GL873530             714961 3149 -  36342412 I
e colAng1.NW_012117110v1       116958 305 -   1784207 I

a score=914457.000000
s hg38.chr15_KI270850v1_alt    415094 93 +    430880 gggtgcctgtaatcccagctacttgggagactgaggcaggagaattgcttgaacccaggaggcagaggttacagtgagctgagatcgcaccac
s panTro5.chr15              63567536 93 +  83230942 gggtgcctgtaatcccagctacttgggagactgaggcaggagaattgcttgaacccaggaggcagaggttacagtgagctgagatcgcaccac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524783 93 +  99763055 gcgtgcctgtaatcccagctactagggagactgaggcaggataaccgcttgaaccagggagtcggaggttgcagtgagccgagatcacaccac
i panPan2.chr15             C 0 I 2
s gorGor5.CYUI01015556v1       124675 93 -   1709092 gggtgcctgtaatcccagatacttgggagactgaggcaggagaattgcttgaacccaggaggcagaggttacagtgagctgagatcacaccac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17286685 93 - 121039945 gggtgactgtaatcccagctacttgggagactgaggcaggagaactgcttgaacccaggaggcggaggttacagtgagctgagatcgcaccac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60960643 93 + 169600520 gggtgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaagcggagcttacagtgagctgagactgcaccac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108487383 93 - 171882078 gggtgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaagcggagcttacagtgagctgagactgcaccac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       103923 93 -   2311642 gggtgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaagcggagcttacagtgagctgagactgcaccac
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        95972 93 -   1987038 gggtgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaagcggaggttacagtgagctgagatcgcaccac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21177361 93 -  24206276 gggtgcctgtaatcccagctatttgggaggctgaggcaggagaattgcttgaacccaggaggcggaggttacagtgagctgagattgcaccac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       119253 93 -   1397330 gggtgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaagcggaggttacagtgagctgagatcgcaccac
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       117263 93 -   1784207 GGgtgcctgtaatcccagctacttcggaggctgaggcaggagaattgcttgaatccaggaggcggaggttacagtgagctgagatcgcaccac
i colAng1.NW_012117110v1    I 305 C 0
s calJac3.chr6               22324345 93 + 158406734 gggcacctgtaatcccagctacttgtgaggctgaggcaggagaattgcttgaccccaggaggtggaggttgcagagagccaagattgccccac
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50551526 93 +  54856640 gggcacctgtaatcccagctacttgtgaggctgaggcaggagaattgcttgaacccaggaggtggagtttgcagtgagccaagactgcaccac
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       702251 93 -   2910086 gggcacctgtaattccagctacttgtgaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcagcaagccaagattgcgccac
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40723227 93 +  42888418 aggcacctgtaatcccagctacttatgaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcagcaagccaagattgcgccac
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81434815  0 + 145441459 C
e dasNov3.JH570731            1930728 86 +   3943991 I
e canFam3.chr3               54479878 75 +  91889043 I
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=286087.000000
s hg38.chr15_KI270850v1_alt    415187 44 +    430880 tgcattccaacctgggcgaaagagctagactctgtctc-------------aaaaaa
s panTro5.chr15              63567629 44 +  83230942 tgcattccaacctgggcgaaagagctagactctgtctc-------------aaaaaa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       124768 57 -   1709092 tgcactccaacctgggcaaaagagctagactctgtctcaaaaaaaaaaaaaaaaaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17286778 52 - 121039945 tgcactccagcctgggcaacagagctagactctgtctc-----aatttaaaaaaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60960736 50 + 169600520 tgcattccagcctaggcgacagagcgagactctgcctt-------gaaagaaaagaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108487476 50 - 171882078 tgcattccagcctaggcgacagagcgagactctgcctt-------gaaagaaaagaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       104016 41 -   2311642 tgcattccagcctaggcgacacagcaagactctgcctt----------------gaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        96065 41 -   1987038 tgcattccagcctgggcgacagagcgagactctgcctt----------------gaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21177454 50 -  24206276 tgcattccagcctgggcgacagagcgagactctgcctc-------gaaagaaaagaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       119346 50 -   1397330 tgcattccagcctgggcgacagagcgagactctgcctt-------gaaagaaaagaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       117356 46 -   1784207 tgcattccagcctgggcgacagagcgagactctgcctc-------gaaag----gaa
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22324438 42 + 158406734 tgtactccagcctgggcgacaaagcaaga--ctgtctc-------------aaaaaa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50551619 44 +  54856640 tgcactccagcctgggtgacaaggcaagactctgtctc-------------aaaaaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       702344 43 -   2910086 tgcactgcagcctgggtgacaa-gcaagactctgtctc-------------aaaaaa
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40723320 44 +  42888418 tgcactccagcctgggcgacaaagcaagattctgtctt-------------aaaaaa
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81434815  0 + 145441459 C
e dasNov3.JH570731            1930728 86 +   3943991 I
e canFam3.chr3               54479878 75 +  91889043 I
e otoGar3.GL873530             714961 3149 -  36342412 I
e panPan2.chr15              80524876  2 +  99763055 I

a score=7931.000000
s hg38.chr15_KI270850v1_alt    415231 2 +    430880 aa
s panTro5.chr15              63567673 2 +  83230942 aa
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       124825 2 -   1709092 aa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17286830 2 - 121039945 aa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60960786 2 + 169600520 ag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108487526 2 - 171882078 ag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       104057 2 -   2311642 ag
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        96106 2 -   1987038 ag
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21177504 2 -  24206276 ag
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       119396 2 -   1397330 ag
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       117402 2 -   1784207 ag
i colAng1.NW_012117110v1    C 0 C 0
s cebCap1.NW_016107610v1       702387 2 -   2910086 aa
i cebCap1.NW_016107610v1    C 0 I 26
e aotNan1.NW_018505940v1     40723364 0 +  42888418 C
e mm10.chr7                  81434815 0 + 145441459 C
e calJac3.chr6               22324480 0 + 158406734 C
e dasNov3.JH570731            1930728 86 +   3943991 I
e canFam3.chr3               54479878 75 +  91889043 I
e otoGar3.GL873530             714961 3149 -  36342412 I
e panPan2.chr15              80524876 2 +  99763055 I
e saiBol1.JH378108           50551663 0 +  54856640 C

a score=1247201.000000
s hg38.chr15_KI270850v1_alt    415233 268 +    430880 gaaagaaa-----aacaaaatataaaaTAAAggccgggtgc-----------------agtggctcacacctataatcccagcactttgggaggccaaggcacgcagatcacaaggtcaggacatcgagaccatcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggtgtggtggcgcgtgcctgtaatcccagctactagggaggctgaggcaggataaccgcttgaaccagggagttggaggttgcagtgagccgagatcacaccac
s panTro5.chr15              63567675 272 +  83230942 gaaagaaagaa-aaacaaaaTATAAAATAAAggccaggtgc-----------------agtggctcacacctgtaatcccagcactttgggaggccaaggcaggcagatcacaaggtcaggacatcgagaccatcctggccaacatgatgaaaccccatctctactaaaaatacaaaaattagctgggtgtggtggcgcgtgcctgtaatcccagctactagggaggctgaggcaggataaccgcttgaaccagggagtcggaggttgcagtgagccgagatcacaccac
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       124827 272 -   1709092 gaaagaaaGaa-aaacaaaatataaaataaaggccgggtgc-----------------agtggctcacacctgtaatcccagcactttgggaggccaaggcaggcagatcacaaggtcagaacatcgagaccatcctggccaacatggtgaaaccctatctctactaaaaatacaaaaattagctggatatggtggcgcgtgcccgtaatcccagctactggggaggctgaggcaggataaccgcttgaaccagggagtcggaggttgcagtgagcctagatcacaccac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17286832 272 - 121039945 gaaagaaagaa-aaaCAAaatataaaataaaggccgggtgc-----------------agtggctcacgcctgtaatcccagcacttcgggaggccaaggcaggcagattgcaaggtcaggacatcgagagcatcctggccaacatggtgaaactctatctctactaaaaatacaaaaattagctgggcgtggtggcgcatgcctgtaatcccagctactagggaggctgaggcaggataaccgcttgaaccaggcagtcagaggttgtagtgagccgagatcacaccac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60960788 271 + 169600520 aaaagaaagag-aaaaaAAATATAAAATAAAggccaggcac-----------------agtggctcatgcctgtaatcccagcattttggcaggccacggcaggcagatcacaaggtcaggagatcgagaccatcctggccaacat-gtgaaaccccgtctctactaaatatacaaaaattagctgggcatggtggtgcgtgcctgtaatcccagctactagggaggctgaggcaggataaccacttgaaccagggagtcggtggttgcagtgagccgagatcacaccac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108487528 271 - 171882078 aaaagaaagag-aaaaaaaatataaaataaaggccaggcac-----------------agtggctcatgcctgtaatcccagcattttggcaggccacggaaggcagatcacaaggtcaggagatcgagaccatcctggccaacat-gtgaaaccccgtctctactaaatatacaaaaattagctgggcatggtggtgcgtgcctgtaatcccagctactagggaggctgaggcaggataaccacttgaaccagggagtcggtggttgcagtgagccaagatcacaccac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       104059 271 -   2311642 aaaagaaagag-aaaaaaaatataaaataaaggccaggcac-----------------agtggctcatgcctgtaatcccagcattttggcaggccacggcaggcagatcacaaggtcaggagatcgagaccatcctggccaacat-gtgaaaccccgtctctactaaatatacaaaaattagctgggcatggtggtgcatgcctgtaatcccagctactagggaggctgaggcaggataaccacttgaaccagggagtcggtggttgcagtgagccgagatcacaccac
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        96108 271 -   1987038 aaaagaaagag-aaaaaaaatataaaataaaggccaggcgc-----------------agtggctcatgcctgtaatcccagcattttggcaggccacggcaggcagatcacaaggtcaggagatcgagaccatcctggccaacat-gtgaaaccccgtctctactaaatatacaaaaattagctgggcatggtggtgcgtgcctgtaatcccagctactagggaggctgaggcaggataaccacttgaaccagggagtcagtggttgcagtgagccgagatcacaccac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21177506 272 -  24206276 aaaagaaagag-aaaaaATATATAAAATAAAggccaggcgc-----------------agtggctcatgcctgtaatcccagcattttggtaggccacggcaggcagatcacaaggtcaggagatcgagaccatcctggccaacatggtgaaaccccatctctactaaatatacaaaaattagctgggcatggtggtgtgtgcctgtaatcccagctactagggaggctgaggcaggataaccacttgaaccagggagtcagtggttgcagtgagccaagatcacaccac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       119398 272 -   1397330 aaaagaaagagaaaaaaatatataaaataaaggccaggcgc-----------------agtggctcatgcctgtaatcccagcattttggcaggccacggcaggcagatcacaaggtcaggagattgagaccatcctggccaacat-gtgaaaccccgtctctactaaatatacaaaaattagctgggcatggtggtgcgtgcctgtaatcccagctactagggaggctgaggcaggataaccacttgaaccagggagtcagtggttgcagtgagccgagatcacaccac
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       117404 289 -   1784207 aaaagaaagag-aaaaaaCATATAAAATAAAGGCCAGGCGCCTTTATTTTATATTTATAAAggctcatgcctgtaatcccagcactttggcaggccacggcaggcagatcacaaggtcaggagatcgagaccatcctggccaacatggtgaaaccccatctctactaaatatacaaaaacaggctgggcatggtggcgtgtgcctgtaatcccagctactagggaggctgaggccggataactgcttgaaccagggagtcggaggttgcagtgagctgagatcacaccac
i colAng1.NW_012117110v1    C 0 C 0
e aotNan1.NW_018505940v1     40723364   0 +  42888418 C
e mm10.chr7                  81434815   0 + 145441459 C
e calJac3.chr6               22324480   0 + 158406734 C
e dasNov3.JH570731            1930728  86 +   3943991 I
e canFam3.chr3               54479878  75 +  91889043 I
e cebCap1.NW_016107610v1       702389  26 -   2910086 I
e otoGar3.GL873530             714961 3149 -  36342412 I
e panPan2.chr15              80524876   2 +  99763055 I
e saiBol1.JH378108           50551663   0 +  54856640 C

a score=125831.000000
s hg38.chr15_KI270850v1_alt    415501 44 +    430880 tgcactccaacctggcaacagagtgagactccgtccc----aaaaaac
s panTro5.chr15              63567947 48 +  83230942 tgcactccagcctggcaacagagtgagactccatccccccaaaaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524878 47 +  99763055 tgcactccagcctggcaacagagtgagactccgtcccccc-aaaaaaa
i panPan2.chr15             I 2 C 0
s gorGor5.CYUI01015556v1       125099 44 -   1709092 cgcactccagcctggcaacagagtgagactccgtccc----aaaaaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17287104 48 - 121039945 tgcactccagcctggcgatagaacgagactccgtctcaaaaaaaaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60961059 38 + 169600520 agcactccagcctggggacagagcgaga--ctgtttc--------aaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108487799 40 - 171882078 agcactccagcctggggacagagcgagactctgtttc--------aaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       104330 15 -   2311642 agcactccagc-------------------------a--------aaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        96379 37 -   1987038 ggcactccagcctggggacagagcgagactctgtctc-----------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21177778 41 -  24206276 tgcactccagcctggggacagagcgagactctgtctc-------aaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       119670 38 -   1397330 ggcactccagcctggggacagagcgagactctgtctc----------a
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       117693 38 -   1784207 tgcactccagcctggggacagagcaagactctgtctc----------a
i colAng1.NW_012117110v1    C 0 C 0
e aotNan1.NW_018505940v1     40723364  0 +  42888418 C
e mm10.chr7                  81434815  0 + 145441459 C
e calJac3.chr6               22324480  0 + 158406734 C
e dasNov3.JH570731            1930728 86 +   3943991 I
e canFam3.chr3               54479878 75 +  91889043 I
e cebCap1.NW_016107610v1       702389 26 -   2910086 I
e otoGar3.GL873530             714961 3149 -  36342412 I
e saiBol1.JH378108           50551663  0 +  54856640 C

a score=2429.000000
s hg38.chr15_KI270850v1_alt    415545  2 +    430880 a---------a
s panTro5.chr15              63567995  2 +  83230942 a---------g
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524925  2 +  99763055 a---------g
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       125143 11 -   1709092 aaaaaagaata
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17287152  2 - 121039945 a---------a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60961097  2 + 169600520 a---------a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108487839  2 - 171882078 a---------a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       104345  2 -   2311642 a---------a
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        96416  1 -   1987038 ----------a
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21177819  2 -  24206276 a---------a
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       119708  2 -   1397330 a---------a
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       117731  2 -   1784207 a---------a
i colAng1.NW_012117110v1    C 0 C 0
s aotNan1.NW_018505940v1     40723364  2 +  42888418 a---------a
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81434815  0 + 145441459 C
e calJac3.chr6               22324480  0 + 158406734 C
e dasNov3.JH570731            1930728 86 +   3943991 I
e canFam3.chr3               54479878 75 +  91889043 I
e cebCap1.NW_016107610v1       702389 26 -   2910086 I
e otoGar3.GL873530             714961 3149 -  36342412 I
e saiBol1.JH378108           50551663  0 +  54856640 C

a score=86220.000000
s hg38.chr15_KI270850v1_alt    415547 12 +    430880 aaagaaagaaag
s panTro5.chr15              63567997 12 +  83230942 aaagaaagaaag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524927 12 +  99763055 aaagaaagaaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       125154 12 -   1709092 aaagaaagaaag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17287154 12 - 121039945 aaagaaagaaag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60961099 12 + 169600520 aaaaaaaaaaag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108487841 12 - 171882078 aaaaaaaaaaag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       104347 12 -   2311642 aaaaaaaaaaag
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        96417 12 -   1987038 aaaaaaaaaaag
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21177821 12 -  24206276 aaaaaaaaaaag
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       119710 12 -   1397330 aaaaaaaaaaag
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       117733 12 -   1784207 aaaaaataaaag
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50551663 12 +  54856640 aaaaaaagaaag
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40723366 12 +  42888418 aaaaaaagaaag
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81434815  0 + 145441459 C
e calJac3.chr6               22324480  0 + 158406734 C
e dasNov3.JH570731            1930728 86 +   3943991 I
e canFam3.chr3               54479878 75 +  91889043 I
e cebCap1.NW_016107610v1       702389 26 -   2910086 I
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=19556.000000
s hg38.chr15_KI270850v1_alt    415559 3 +    430880 aaa
s panTro5.chr15              63568009 3 +  83230942 aaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524939 3 +  99763055 aaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       125166 3 -   1709092 aaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17287166 3 - 121039945 aaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60961111 3 + 169600520 gaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108487853 3 - 171882078 gaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       104359 3 -   2311642 gaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        96429 3 -   1987038 gaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21177833 3 -  24206276 gaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       119722 3 -   1397330 gaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       117745 3 -   1784207 aaa
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22324480 3 + 158406734 aaa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50551675 1 +  54856640 --a
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40723378 3 +  42888418 aaa
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81434815 0 + 145441459 C
e dasNov3.JH570731            1930728 86 +   3943991 I
e canFam3.chr3               54479878 75 +  91889043 I
e cebCap1.NW_016107610v1       702389 26 -   2910086 I
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=96671.000000
s hg38.chr15_KI270850v1_alt    415562 20 +    430880 aagaaaATAT-AA--------------------------------------------AATAAAAT
s panTro5.chr15              63568012 20 +  83230942 aagaaAATAT-AA--------------------------------------------AATAAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524942 20 +  99763055 aagaaaATAT-AA--------------------------------------------AATAAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       125169 20 -   1709092 aagaaaatat-aa--------------------------------------------aataaaat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17287169 20 - 121039945 aagaaaatat-aa--------------------------------------------aataaaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60961114 21 + 169600520 aagaaaaTACGAA--------------------------------------------AACAAAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108487856 21 - 171882078 aagaaaatacgaa--------------------------------------------aacaaaat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       104362 21 -   2311642 aagaaaatacgaa--------------------------------------------aacaaaat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        96432 21 -   1987038 aagaaaatacgaa--------------------------------------------aacaaaat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21177836 65 -  24206276 aagaaaaTACGAAAACAAAATAAATAACTCAAACCAAAAACACTTCAACATTCTTATAACAAAAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       119725 21 -   1397330 aagaaaatacgaa--------------------------------------------aacaaaat
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       117748 21 -   1784207 aagaaaaTACGAA--------------------------------------------AACAAAAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22324483 20 + 158406734 accaaaatgt-aa--------------------------------------------aataaata
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50551676 16 +  54856640 aagaaaaTAT-A------------------------------------------------AAATA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       702415 20 -   2910086 aagaaaatat-aa--------------------------------------------aataaaTA
i cebCap1.NW_016107610v1    I 26 C 0
s aotNan1.NW_018505940v1     40723381 14 +  42888418 ------aTAT-AA--------------------------------------------AATAAATA
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81434815  0 + 145441459 C
e dasNov3.JH570731            1930728 86 +   3943991 I
e canFam3.chr3               54479878 75 +  91889043 I
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=134318.000000
s hg38.chr15_KI270850v1_alt    415582 15 +    430880 AAATAACTCAAACCC
s panTro5.chr15              63568032 15 +  83230942 AAATAACTCAAACCC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524962 15 +  99763055 AAATAACTCAAACCC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       125189 15 -   1709092 aaataaCTCAAACCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17287189 15 - 121039945 aaataaCTCAAACCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60961135 15 + 169600520 AAATAACTCAAACCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108487877 15 - 171882078 aaataaCTCAAACCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       104383 15 -   2311642 aaataaCTCAAACCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        96453 15 -   1987038 aaataaCTCAAACCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21177901 15 -  24206276 AAATAACTCAAACCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       119746 15 -   1397330 aaataaCTCAAACCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       117769 15 -   1784207 AAATAACTCAAACCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22324503 14 + 158406734 aaaTCACTCTAA-CA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50551692 14 +  54856640 AAATTACTCAAA-CA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       702435 14 -   2910086 AAATTACTCAAA-CA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40723395 14 +  42888418 AAATTACTCAAG-CA
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54479953 15 +  91889043 AAGTAACTCAAACAA
i canFam3.chr3              I 75 C 0
s dasNov3.JH570731            1930814 14 +   3943991 AAATAACTCAAGCA-
i dasNov3.JH570731          I 86 C 0
e mm10.chr7                  81434815  0 + 145441459 C
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=2006478.000000
s hg38.chr15_KI270850v1_alt    415597 175 +    430880 AGAACACT---TCAAC----ATTCTTATAATGGGTTGCAACTCCCACAAA-----ATTAAACACC----ATTAGGACATCCACACCT-CTTGGAA----AGAGTCAACTTCAGGGGATGCTGCCCTC-TATCTCCACTATTCCTTGGAGTATCCAATAGAT-ACAGAAACTAAATGCGTGCTG------ACTCATGT------TTAAAAG
s panTro5.chr15              63568047 175 +  83230942 AAAACACT---TCAAC----ATTCTTATAATGGGTTGCAACTCCCACAAA-----ATGAAACACC----ATTAGGACATCCACACCT-CTtggaa----agagtcaacttcaggagatgctgccctc-tatctccactattccttggagtaTCCAATAGAT-ACAGAAACTAAATGCGTGCTG------ACTCATGT------TTAAAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80524977 175 +  99763055 AAAACACT---TCAAC----ATTCTTATAATGGGTTGCAACTCCCACAAA-----ATGAAACACC----ATTAGGACATCCACACCT-CTTGGAA----AGAGTCAACTTCAGGAGATGCTGCCCTC-TATCTCCACTATTCCTTGGAGTATCCAATAGAT-ACAGAAACTAAATGCGTGCTG------ACTCATGT------TTAAAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       125204 175 -   1709092 AAAGCACT---TCAAC----ATTCTTATAATGGGTTGCAACTCCCACAAA-----ATGAAACACC----ATTAGGACATCCACACCT-CTTGGAA----AGAGTCAACTTCAGGAGATGCTGCCCTC-TATCTCCACTATTCCTTGGAGTATCCAATAGAT-ACAGAAACTAAATGCGTGCTG------ACTCATGT------TTAAAAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17287204 169 - 121039945 AAAACACT---TCAAC-----------TAATGGGTTGCAACTCCCACAAA-----ATGAAACACC----ATTAGGACATCCACACCT-CTTGGAA----AGAGTCAACTTCAGGAGATGCTGCCCTC-TATCTCCACTATTCCTTGGAGTATCCAGTAGATCACAGAAACTAAATGCATGCTG------ACTCATGT------TTAAAAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60961150 176 + 169600520 AAAACACT---TCAAC----ACTCTTATAATGGGTTGCAACTCCCACAAA-----ATGAAACACC----GTTAGGACATCCACACCT-CTTGGAA----AGAGTCAACTTCAGAAGATGCTGCCCTC-TATCTCCACTATTCCTTGGAGTATCCAGTAGATCACAGAAACTAAATGCATGCTG------ACTCATGT------TTAAAAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108487892 176 - 171882078 AAAACACT---TCAAC----ATTCTTATAATGGGTTGCAACTCCCACAAA-----ATGAAACACC----GTTAGGACATCCACACCT-CTTGGAA----AGAGTCAACTTCAGAAGATGCTGCCCTC-TATCTCCACTATTCCTTGGAGTATCCAGTAGATCATAGAAACTAAATGCATGCTG------ACTCATGT------TTAAAAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       104398 176 -   2311642 AAAACACT---TCAAC----ACTCTTATAATGGGTTGCAACTCCCACAAA-----ATGAAACACC----GTTAGGACATCCACACCT-CTtggaa----agagtcaacttcagaagatgctgccctc-tatctccactattccttggagtaTCCAGTAGATCATAGAAACTAAATGCATGCTG------ACTCATGT------TTAAAAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        96468 176 -   1987038 AAAACACT---TCAAC----GTTCTTATAATGGGTTGCAACTCCCACAAA-----ATGAAACACC----GTTAGGACATCCACACCT-CTtggaa----agagtcaacttcagaagatgctgccctc-tatctccactattccttggagtaTCCAGTAGATCATAGAAACTAAATGCATGCTG------ACTCATGT------TTAAAAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21177916 176 -  24206276 AAAACACT---TCAAC----ATTCTTATAATGGATTGCAACTCCCACAAA-----ATGAAACACC----GTTAGGACATCCACACCT-CTTGGAA----AGAGTCAACTTCAGAAGATGCTGCCCTC-TATCTCCACTATTCCTTGAAGTATCCAGTAGATCATAGAAACTAAATGCATGCTG------ACTCATGT------TTAAAAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       119761 176 -   1397330 AAAACACT---TCAAC----GTTCTTATAATGGGTTGCAACTCCCACAAA-----ATGAAACACC----GTTAGGACATCCACACCT-CTtggaa----agagtcaacttcagaagatgctgccctc-tatctccactattccttggagtaTCCAGTAGATCATAGAAACTAAATGCATGCTG------ACTCATGT------TTAAAAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       117784 176 -   1784207 AAAACACT---TCAAC----ATTCTTATAATGGGTTGCAACTCTGACAAA-----ATGAAACACC----GTTAGGACATCCACACCT-CTtggaa----agaatcaacttcagaagatgctgccctc-tatctccactattccctggagtaTCCAGTACATCATAGAAACTAAATGCATGCTG------ACTCATGT------TTAAAAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22324517 182 + 158406734 AAAACACT---TCAAC----ATTCTCATAATGCATTGCAACTCCCACAAAAGATTATTAAACACC----GCTAGGACATCTGCACCTCCTTGAAA----AGAGTCAACTTCAGGAGATGCTGCCCTC-TAACTTCACTATTCCTTGGAGTATCTAATAGATCACAAAAACTAAATGTGTGCTG------ACTCATGT------TTAAAAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50551706 183 +  54856640 AAAACACT---TCAAC----ATTCTTATAATGCGTTGCAATGCCCACAAAAGATTATTAAACACC----ACTAGGACATCTGAACCTCCTTGGAA----AGAGTCAACTTCAGGAGATGCTGCCCTCTTAACTCCACTATTCCTTGGAGTATCCAATAGATCATAAAAACTAAATGTGTGCTG------ACTCATGT------TTAAAAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       702449 183 -   2910086 AAAAAACT---TCAAC----ATTCTTATAATGCGTTGCAACTCCCACAAAAGATTATTAAACACC----GCTAGGACATCTGCACCTCCTTGGAA----AGAGTCAACTTCAGGAGATGCTGCCCTCTTAACTCCACTATTACTTGGAGTATCCAATAGATCATGAAAACTAAATGTGTGCTG------ACTCAGGT------TTAAGAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40723409 180 +  42888418 AAAACACT---TCAAC----ATTCTTATAATGCGTTGCAACTCCCACAAAAGGTTATTAAACACC----GCTAGGACATCTGCACCTCCTTGGAA------AGTCAACTTCAGGAGATGCTGCCCTC-TAACTCCACTATTCCTTGGAGTATCCAATAGATCATAGAAACTAAATGTGTGCTG------ACTCATGT------TTAAAAG
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81434815 187 + 145441459 AAAACATTACATCAAC----ATTCTTAAAACATGTTGCAACTCCCAGAGAAGACTATGAAACACT----GTCAGGTATTCATAATTT-CTTGGTATTCAAGAGTTATCTTCAAAAGCT----TCCCC-ATCCCTTACTAATCAGTG--GCTGCCTACATGT-GGGAAAACTACATGCCTGTGGCCCTGTATTCATGT------TTTAAAG
i mm10.chr7                 C 0 I 971
s canFam3.chr3               54479968 195 +  91889043 GAAACATT---CCATCAATTATTTTTACAACATGTTGCAACTTCCACGAAAGATTATGAAACAACACTTGTTAGGACATCCAAGCCTCCTTCTGA----AGTATCATCTT-AGGGGATGCTCCCTTC-TCCCTCCACTATCCTATGGGGTATCCTACATACCATCAAAACTAAATGCTCATTG------ACTTGCATTTGTAGTTAAAAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1930828 187 +   3943991 AAATCATTCCATCAGC----ATTCTTATATCATGTTTCAACTCCCAAAAT-GATTATCAAACATT----GTTAGAATATCCAATTTTACTTGT------AGAGTCATCTTCAGAGGACGCTGCCCTC-TCCCTCCACTATTCTGTGGAGTATCCCATGTATCACAAAAACTAAATGC-TGTTGACTTGCACTCATGA------TTAAGAA
i dasNov3.JH570731          C 0 C 0
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=725210.000000
s hg38.chr15_KI270850v1_alt    415772  93 +    430880 CTGTTAAAACATTCGAGAGCTACACTGTCCAGTGCAGTAGCC-----------------ACT---------------AAACACCTGAAATg-------tccatgttgagatatgct-----tgtaaaatccacactg
s panTro5.chr15              63568222  93 +  83230942 CTGTTAAAACATTCGAGAGCTACACTGTCCAGTGCAGTAGCC-----------------ACT---------------AAACACCTGAaatg-------tccatgttgagatatgct-----tgtaaaatccacactg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80525152  93 +  99763055 CTGTTAAAACATTCGAGAGCTACACTGTCCAGTGCAGTAGCC-----------------ACT---------------AAACACCTGAaatg-------tccatgttgagatatgct-----tgtaaaatccacactg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       125379  93 -   1709092 CTGTTAAAACATTCGAGAGctacactgtccagtgcagtagcc-----------------act---------------caacacctgaaatg-------tccatgttgagatatgct-----tgtaaaatccacactg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17287373  93 - 121039945 CTCTTAAAACATTTGAGAGCTACACTGTCCAGTGCAGTAGCC-----------------ACC---------------AAACACCTGAaatg-------tccatgttgagatatgct-----tgtaaaatccacactg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60961326  65 + 169600520 CTGT----------------------------TGCAGTAGCC-----------------ACT---------------AAACACCTGAAATG-------TTCATGCTGAGATAAGCT-----TGTAAGATCCACATTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108488068  65 - 171882078 CTGT----------------------------TGCAgtagcc-----------------act---------------aaacacctgaaatg-------ttcatgctgagataagct-----tgtaagatccacactg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       104574  65 -   2311642 CTGT----------------------------TGCAGTAGCC-----------------ACT---------------AAACACCTGAAATG-------TTCATGCTGAGATAAGCT-----TGTAAGATCTACACTG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        96644  65 -   1987038 CTGT----------------------------TGCAGTAGCC-----------------ACT---------------AAACACCTGAAATG-------TTCATGCTGAGATAAGCT-----TGTAAGATCCACACTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21178092  93 -  24206276 CTGTTAAAACATTCGAGAGctacactgtccaatgcagtagcc-----------------act---------------aaacacctgaaatg-------tccatgctgagataagct-----tgtaagatccacactg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       119937  65 -   1397330 CTGT----------------------------TGCAGTAGCC-----------------ACT---------------AAACACCTGAAATG-------TTCGTGCTGAGATAAGCT-----TGTAAGATCCACACTG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       117960  93 -   1784207 CTGTTAAAACATTCGAGAGctacactgtccaatgcagtagcc-----------------act---------------aaacacctgaaatg-------tccatactgagataagct-----tgtaagatccacattg
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22324699  93 + 158406734 CTGTTAAAACATTCCAGAGctacactgtccaatgcagtagcc-----------------act---------------aaacacctgaaatg-------tacatattgagatatgcc-----tgtaaaatcgacactg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50551889  93 +  54856640 CTGTTAAAACATTCCAGAGctacactgtccaatgcagtagcc-----------------act---------------aaacacctgaaatg-------tccatgttgagatatgcc-----tgtaaaattgacactg
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       702632  83 -   2910086 CTGGT-AAACAGTCCAGAGCTATACTGTCCAATGCAGTAGCT-----------------ACT---------------AAACACCTGAAATG-------TCCATGATGAGATATGCC-----TGTAAAA---------
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40723589  93 +  42888418 CTGTTAAAACATTCCAGAGctacactgtccaatgccgtagcc-----------------act---------------aaacacctgaaacg-------tccatgttgagatatgcc-----tgtaaaatcaacactg
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54480163 117 +  91889043 CAATTAaaatattcaagaaatgcactgtccaatacagcagcc-----------------actagtcacatggtgacaaagcacctgaaacacaattatttccaactgaactgcattgtaaatgtgaaatatata---
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1931015 112 +   3943991 CAGTTAAAACATTCAAGAGTTATACTAGccagtacagtagcctctagccactagtagttact---------------gagtatctgacatgtagctagttcaaattgaaag----------tataacatatacacca
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81435002 971 + 145441459 I
e otoGar3.GL873530             714961 3149 -  36342412 I

a score=2000326.000000
s hg38.chr15_KI270850v1_alt    415865 200 +    430880 gattttgaagtcgtagtact--aataa--aaa---aaatctcattaatagttttcatattaa-----a-tgttgtcatattataat-------atattgggttaaataaaa-----tattaatttca-------tctgtatcttaa-----------ttttaacatggctaccag-aaaatct---gtaa---catatgtgatccacattatatctctTTATATAAATACT-TGTGTAATCTGTGACCTTT
s panTro5.chr15              63568315 204 +  83230942 gattttgaagtcgtagtact--aacaa--aaa---aaatctcattaatagttttcatattaattaa-a-tgttgtcatattataat-------atattgggttaaataaaa-----tattaatttca-------tctgtatcttaa-----------ttttaacatggctaccag-aaaatct---gtaa---catatgtgatccacattatatctctTTATATAAATACT-TGTGTAATCTGTGACCTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80525245 205 +  99763055 gattttgaagtcgtagtact--aacaa--aaa---aaatctcattaatagttttcatattaattaa-a-tgttgtcatattataat-------atattgggttaaataaaa-----tattaatttca-------tctgtatcttaa-----------ttttaacatggctaccagaaaaatct---gtaa---catatgtgatccacattatatctctTTATATAAATACT-TGTGTAATCTGTGACCTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       125472 196 -   1709092 gattttgaagtcatagtact--aacaa--aaa---taatctcattaataggtttcatattaattaa-a-tg--------tcatatt-------atattgggttaaataaaa-----tattaatttca-------tctgtatcttaa-----------ttttaacatggctaccag-aaaatct---gtaa---catatgtgatccacattatatctctTTATATAAATACT-TGTGTAATCTGTGACCTTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17287466 203 - 121039945 gattttgaagtcgtagtact--aacaa--aaa---aaa-ctcattaatagttttcatattaattaa-a-tgttgtcatattataat-------atattgggttaaataaaa-----tattaatttca-------tctgtatcttaa-----------ttttaacatggctaccag-aaaatct---gtaa---catatgtgattcacattatatctctTTATATAAATACT-TGTGTAATCTGTGACCTGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60961391 201 + 169600520 GATTTTGAAGTCATAGTACT--AACAA-taaa---aaatctcatt----gtttttatattaattaa-a-tgttgtcatattatcat-------atattgggttaaataaaa-----tattaatttca-------tctgtatcttaa-----------ttttaacatggctaccag-aaaatct---gtaa---catatgtaattcacattatatctctTTATATAAATACT-CGTGTTATCTGTGACCTGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108488133 202 - 171882078 gattttgaagtcatagtact--aacaa-taaa---aaatctcatt----gtttttatattaattaa-attgttgtcatattatcat-------atattgggttaaataaaa-----tattaatttca-------tctgtatcttaa-----------ttttaacatggctaccag-aaaatct---gtaa---catatgtaattcacattatatctctTTATATAAATACT-CGTGTTATCTGTGACCTGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       104639 201 -   2311642 GATTTTGAAGTCATAGTACT--AACAA-taaa---aaatctcatt----gtttttatattaattaa-a-tgttgtcatattatcat-------atattgggttaaataaaa-----tattaatttca-------tctgtatcttaa-----------ttttaacatggctaccag-aaaatct---gtaa---catatgtaattcacattatatctctTTATATAAATACT-CGTGTTATCTGTGACCTGT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        96709 201 -   1987038 GATTTTGAAGTCATAGTACT--AACAA-taaa---aaatctcatt----gtttttatattaattaa-a-tgttgtcatattatcat-------atattgggttaaataaaa-----tattaatttca-------tctgtatcttaa-----------ttttaacatggctaccag-aaaatct---gtaa---catatgtaattcacattatatctctTTATATAAATACT-CATGTTATCTGTGACCTGT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21178185 197 -  24206276 gattttgaagtcatagtact--aacaa-taaa---aaatctcatt----gtttttat----attaa-a-tgttgtcatattatcat-------atattgggttaaataaaa-----tattaatttca-------tctgtatcttaa-----------ttttaacatggctaccag-aaaatct---gtag---catatgtaattcacattatatctctTTATATAAATACT-CGTGTTATCTGTGACCTGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       120002 201 -   1397330 GATTTTGAAGTCATAGTACT--AACAA-taaa---aaatctcatt----gtttttatattaattaa-a-tgttgtcatattatcat-------atattgggttaaataaaa-----tattaatttca-------tctgtatcttaa-----------ttttaacatggctaccag-aaaatct---gtaa---catatgtaattcacattatatctctTTATATAAATACT-TGTGTTATCTGTGACCTGT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       118053 203 -   1784207 gattttgaagtcatagtactaaaacaa-taaa---aaatctcatt----gtttttatattcattaa-a-tgttgtcatattatcat-------atattgggttaaataaaa-----tattaatttca-------tctgtatcttaa-----------ttttaacatggctaccag-aaaatct---gtaa---catatgtgattcacattatatctctTTATCTAAATACT-CATGTAATCTGTGACCTGT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22324792 193 + 158406734 gattttgaagtcttagtact-----aa--aaa---aaatttcattaatagtttt---attaattaa-a-tgttaccatactattac-------atattgggct-----aaa-----tattaatttca-------tctatatcttaa-----------ttttaatatggctaccag-aaaatct---atga---catatgtgattcacattatatctctTTATATAAATACT-TGTGTAACCTGTGGCCTGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50551982 200 +  54856640 gattttgaagtctcagtact--aacaa--aaa---aaatctcattaatagtttt---tttaattaa-a-tgttgccatactattat-------atattgggttaaataaaa-----taataatttca-------tctatatcttaa-----------ttttaatatgggtaccag-aaaatct---atga---catatgtgattcacattatatctctTTATATAAATACT-CATGTAACCTGTGGCCTG-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       702715 177 -   2910086 -------------------------CA--aaa---aaatctcattaatagtttt----ttaattaa-a-tgttgccatactattgc-------atattggactaaataaaa-----tattaatttca-------tctatattttaa-----------ttttaatatggctaccag-aaaatct---atga---catatgtgattaacattatatctctTTATATAAATACT-CTTGCAACCTGTGGCCTGT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40723682 196 +  42888418 gattttgacgtcttagtact--aacaa--aaa---aaa--tcattaatagtttt--tttttattaa-t-tgttgccatactatcac-------atattgggct----aaat-----tattaatttca-------tctatatcttaa-----------tcttaatatggctaccag-aaaatct---atga---catatgtgattcacattatatctctTTATATAAATACT-CATGTAACCTGTGGCCTGT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             718110 192 -  36342412 gagccTAAAGTCTTAATTCT--AATGA--AAA---TAATCTCATT-ATAGTTTTTATACTATTTGACA-TGTTGT-ATATTTCTAA-------ATA-------AATTATGA-----AATTGATTTCA-------TACATTTCT-------------------ACAtggctaccag-aaaatctatagtaa---tgtatgtaattcacattatatttctatATATAAATACTCCTTATCACCTTTGGCCTAT
i otoGar3.GL873530          I 3149 C 0
s canFam3.chr3               54480280 200 +  91889043 --tattgaagttttagcact--aacaa--aaaatgacatgccatttatggtttttatattgattat-a-tgttgacatatt-ttgt-------atatt-----agataaaa-----taTTAA---CA-------TCCCTTTTTAAAAAAGAAAACCTTTAAAATGTGGCTACATT-TATATAT---GTA----------TGACTCCCATTATAATTCTCTATATAAATAGT-CCTGCTATGTTTGACCTAT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1931127 216 +   3943991 gattttgaagtgtcagcatt--aactagtgta---acatttcaat---------aatatcgattat-a-cattggcatgataatatttgggacatgatggggtaaatgaaatattttattaatttcaccttttctctttacctt-------------ttttaatgtggctac-ag-aaaattt---aaaatttcatatatggctcaccttatatatctatATGTAAATAGT-CCTGCCACATTAGACCTAT
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81435002 971 + 145441459 I

a score=6972512.000000
s hg38.chr15_KI270850v1_alt    416065 530 +    430880 --T--CTTTTTTCCCCAAC-CTTTCTGTGTAT--CATAAAGTAGGTTTACACATCCT-AATCAAAGGCAGTCTTCACCCAGAGAGGGATTCAATCCATAAACTAAACCAC--AA-AAAGGCAAGTATTGCCAGCAACTCAA----CATTGTTCTTCACAAGCTTTCCAAGGAAGACCTCTTACATGCACTACTTAGAAGCAGATCTGTACAGATG------CCTACCACGT----------------TCAAGTTTTCAAACCTAA-ATCACCTGGCAAATGATCATGAATTCCTCGGTTTATAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTACTACACGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACACAG------AAAAAAAAAGATATTTAGGTTT---------------------------------TCTACACTCCTTTATGAC-------------------CCCCTTTCTCTCCACATTACGA--ATTAG--ATAAAGTAGGAAGGA-CTTAAGTATCTTCTTTATACATTAaaacac
s panTro5.chr15              63568519 530 +  83230942 --T--CTTTTTTCCCCAAC-CTTTCTGTGTAT--CATAAAGTAGGTTTACACATCCT-AATCAAAGGCAGTCTTCACCCAGAGAGAGATTCAATCCATAAACTAAACCAC--AA-AAAGGCAAGTATTGCCAGCAACTCAA----CATTGTTCTTCACAAGCTTTCCAAGGAAGACCTCTTACATGCACTACTTAGAAGCAGATCTGTACAGATG------CCTACCACGT----------------TCAAGTTTTCAAACCTAA-ATCACCTGGCAAATGATCATGAATTCCTCGGTTTACAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTACTACACGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACACAG------AAAAAAAAAGATATTTAGGTTT---------------------------------TCTACACTCCTTTATGAC-------------------CCCCTTTCTCTCCACATTACGA--ATTAG--ATAAAGTAGGAAGGA-CTTAAGTATCTTCtttatacattaaaacac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80525450 529 +  99763055 --T--CTTTTTTCCCCAAC-CTTTCTGTGTAT--CATAAAGTAGGTTTACACATCCT-AATCAAAGGCAGTCTTCACCCAGAGAGGGATTCAATCCATAAACTAAACCAC--AA-AAAGGCAAGTATTGCCAGCAACTCAA----CATTGTTCTTCACAAGCTTTCCAAGGAAGACCTCTTACATGCACTACTTAGAAGCAGATCTGTACAGATG------CCTACCACGT----------------TCAAGTTTTCAAACCTAA-ATCACCTGGCAAATGATCATGAATTCCTCGGTTTACAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTACTACACGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACACAG-------AAAAAAAAGATATTTAGGTTT---------------------------------TCTACACTCCTTTATGAC-------------------CCCCTTTCTCTCCACATTACGA--ATTAG--ATAAAGTAGGAAGGA-CTTAAGTATCTTCTTTATACATTAaaacac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       125668 500 -   1709092 --T--CTTTTTTCCCCAAC-CTTTCTGTGTAT--CATAAAGTAGGTTTACACATCCT-AATCAAAGGCAGTCTTCACCCAGAGAGGGATTCAATCCATAAACTAAACCAC--AA-AAAGGCAAGTATTGCCAGCAACTCAA----CATTGTTCTTCACAAACTTTCCAAGGAAGACCCCTTACATGC-------------------------------------ACCACGT----------------TCAAGTTTTCAAACCTAA-ATCACCTGGCAAATGATCATGAATTCCTCGGTTTACAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTACTACACGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACACAG-----AAGAAAAAAAGATATTTAGGTTT---------------------------------TCTACACTCCTTTGTGAT-------------------CCCCTTTCTCTCCACATTACGA--ATTAG--ATAAAGTAGGAAGGA-CTTAAGTATCTTCTTTGTACATTAcaacac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17287669 536 - 121039945 --T--CTTTTTTCCCCAAC-CTTTCTGTGTAT--CATAAAGTAGGTTTACACATCCT-AATCAAAGACAGTCTTCACCCAGAGAGGGATTCAATCCATAAACTAAACCAC--AA-AAAGGCAAGTATTGCCGGCAACTCAA----CATTGTTCTTCACAAGCTTTCCAAGGAAGACCTCTTACATGCACTACCTAGTAGCAGATCTGTACAGATG------CCTACCACGT----------------TCAAGTTTTCAAACCTAA-ATCACCTGGCAAATGATCATGAATTCCTCGGTTTACAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTACTACACGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACaaaaaaaaaaaaaaaaaaaGATATTTAGGTTT---------------------------------TCTACACTCCTTTATGAC-------------------CCCCTTTCTCTCCACATTATGA--ATTAG--ATAAAGTAGGAAGGA-CTTAAGTATCTTCTTTATACATTAAAACAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60961592 529 + 169600520 --T--CTTTTTTCCCCAAC-CTTTCTGTGTAT--CATAAAGTAGGTTTACACATCCT-AATTAAAGGTAGTCTTCACCCAAAGAGGGATTCAATCCATAAACTAAACCAC--AA-AAAGGCAAGTGTTGCTGGCAGCTCAA----CATTGTTCTTCACAAGCTTTCCGAGGAAGACCTCTTACATGCACTACCTAGAAGCAGATCTGTACAGATG------CCTACCACGT----------------TCAAGTTTTCAAACCTAA-ATCACCTGGCAAATGATCATGAATTCCTCGGTTTATAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTGCTACACGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACATAG-----AAAAAAAAAAGATATTTAGGTTT---------------------------------ACTACACTCCTCTGTGAC-------------------CCC--TTCTTTCCACACTATGA--ATTAG--ATAAAGTAGGAAGGA-CTTAAATATCTTCTTTACATATTAAAACAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108488335 529 - 171882078 --T--CTTTTTTCCCCAAC-CTTTCTGTGTAT--CATAAAGTAGGTTTACACATCCT-AATTAAAGGTAGTCTTCACCCAAAGAGGGATTCAATCCATAAACTAAACCAC--AA-AAAGGCAAGTGTTGCTGGCAGCTCAA----CATTGTTCTTCACAAGCTTTCCAAGGAAGACCTCTTACATGCACTACCTAGAAGCAGATCTGTACAGATG------CCTACCACGT----------------TCAAGTTTTCAAACCTAA-ATCACCTGGCAAATGATCATGAATTCCTCGGTTTATAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTGCTACACGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACATAG-----AAAAAAAAAAGATATTTAGGTTT---------------------------------ACTACACTCCTCTGTGAC-------------------CCC--TTCTTTCCACACTATGA--ATTAG--ATAAAGTAGGAAGGA-CTTAAATATCTTCTTTATATATTAAAACAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       104840 529 -   2311642 --T--CTTTTTTCCCCAAC-CTTTCTGTGTAT--CATAAAGTAGGTTTACACATCCT-AATTAAAGGTAGTCTTCACCCAAAGAGGGATTCAATCCATAAACTAAACCAC--AA-AAAGGCAAGTGTTGCTGGCAGCTCAA----CATTGTTCTTCACAAGCTTTCCGAGGAAGACCTCTTACATGCACTACCTAGAAGCAGATCTGTACAGATG------CCTACCACGT----------------TCAAGTTTTCAAACCTAA-ATCACCTGGCAAATGATCATGAATTCCTCGGTTTATAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTGCTACACGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACATAG-----AAAAAAAAAAGATATTTAGGTTT---------------------------------TCTACACTCCTCTGTGAC-------------------CCC--TTCTTTCCACACTATGA--ATTAG--ATAAAGTAGGAAGGA-CTTAAATATCTTCTTTATATAGTAAAACAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        96910 528 -   1987038 --T--CTTTTTTCCCCAAC-CTTTCTGTGTAA--CATAAAGTAGGTTTACACATCCT-AATTAAAGGTAGTCTTCACCCAAAGAGGGATTCAATCCATAAACTAAACCAC--AA-AAAGGCAAGTGTTGCTGGCAGCTCAA----CATTGTTCTTCACAAGCTTTCCGAGGAAGACCTCTTACATGCACTACCTAGAAGCAGATCTGTACAGATG------CCTACCACGT----------------TCAAGTTTTCAAATCTAA-ATCACCTGGCAAATGATCATGAATTCCTCGGTTTATAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTGCTACACGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACATAG------AAAAAAAAAGATATTTAGGTTT---------------------------------TCTACACTCCTCTGTGAC-------------------CCC--TTCTTTCCACACTATGA--ATTAG--ATAAAGTAGGAAGGA-CTTAAATATCTTCTTTATATATTAaaacac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21178382 529 -  24206276 --T--CTTTTTTCCCCAAC-CTTTCTATGTAT--CATAAAGTAGGTTTACACATCCT-AATTAAAGGTAGTCTTCACCCAAAGAGGGATTCAATCCATAAACTAAACCAC--AA-AAAGGCAAGTGTTGCTGGCAACTCAA----CATTGTTCTTCACAAGCTTTCCGAGGAAGACCTCTTACATGCACTACCTAGAAGCAGATCTGTACAGATG------CCTACCACGT----------------TCAAGTTTTCAAATCTAA-ATCACCTGGCAAATGATCATGAATTCCTCGGTTTATAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTGCTACACGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACATAG-----AAAAAAAAAAGATATTTAGGTTT---------------------------------TCTACACTTCTCTGTGAC-------------------CCC--TTCTTTCCACACTATGA--ATTAG--ATAAAGTAGGAAGGA-CTTAAGCATCTTCTTTATATATTAAAAAAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       120203 528 -   1397330 --T--CTTTTTTCCCCAAC-CTTTCTGTGTAT--CATAAAGTAGGTTTACACATCCT-AATTAAAGGTAGTCTTCACCCAAAGAGGGATTCAATCCATAAACTAAACCAC--AA-AAAGGCAAGTGTTGCTGGCAGCTCAA----CATTGTTCTTCACAAGCTTTCCGAGGAAGACCTCTTACATGCACTACCTAGAAGCAGATCTGTACAGATG------CCTACCACGT----------------TCAAGTTTTCAAATCTAA-ATCACCTGGCAAATGATCATGAATTCCTCGGTTTATAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTGCTACACGTGGAGAGAGCAGGCGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACATAG------AAAAAAAAAGATATTTAGGTTT---------------------------------TCTACACTCCTCTGTGAC-------------------CCC--TTCTTTCCACACTATGA--ATTAG--ATAAAGTAGGAAAGA-CTTAAATATCTTCTTTATATATTAAAACAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       118256 531 -   1784207 --T--CTTTTTTCCCCAAC-CTTTCTATGTAT--CATAAAGTAGGTTTACACATCCT-AATTAAAGGTAGTCTTCATCCAAAGAGGGATTCAATCCATAAACTAAACCAC--AA-AAAGGCAAGTGTTGCCGGCAACTCAA----CATTGTTCTTCACAAGCTTTCCGAGGAAGACCTCTTACATGCACTACCTAGAAGTAGATCTGTACAGATG------CCTACCACGT----------------TCAAGTTTTCAAATCTAA-ATCACCTGGCAAATGATCATGAATTCCTCGGTTTACAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTGCTACACGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACATAG-----AAAAAAACAAGATATTTAGATTT---------------------------------TCTACACTTCTTTGTGAC-------------------CCCCTTTCTTTCCACACTATGA--ATTAG--ATAAAGTAGGAAGGA-CTTAAGTATTTTCTTTATACATTAAAACAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22324985 530 + 158406734 --TC-TTTTTCTCCCCAAT-CTTCCTATGTAT--CATAAAGTAGATTTACACATCCT-AACCAAAGGCAGTCTTCACCCAGACAGGTATTCAATCCATAAACT---------AA-AAACCCAAGTGTTGCCAGCAACTCAA----CATCATTCTTCACAAGCTTTCCAAGGAAGACCTCTTACAT-CACTACCTAGAAGCAGATCTGTACAGATC------CCTAGCACAT----------------TCAAGTTTTCAAATCTAA-ATCACCTGGCAAATGATCATGAATTCCTCGGTTTACAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTGCTACATGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACATAG------GGAAAAAAAGATATTTAGGTTT---------------------------------TCTATACCCCTTTATGAC--------AGACTTTGTA-CCCCCTTCTCTCCACACACTGA--GTTAG--ATGAAGTAGGAAGGA-CTTAAATATCTTGTTTATACATTAAAA---
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50552182 528 +  54856640 -----TTTTTTCCCCCAAT-CTTCCTATGTAT--CATAAAGTCGATTTACACATCCT-AACCAAAGGCAGTCTTCACCCAGACAGGTATTCAATCCATAAACT---------AA-AAACCCAAGTGTTGCCATCAACTCAA----CATCATTCTTCACAAGCTTTCCAAGGAAGACCTCTTACAT-CACTACCTAGAAGCAGATCTGTACAGACC------CCTAGCACAT----------------TCAAGTTTTCAAATCTCA-ATCACCTGGCAAATGATCATGAATTCCTCGGTTTACTGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTGCTACATGTGGATAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACATAG------GGAAAAAAAGATATTTAGGTTT---------------------------------TCTATACTCCTTTATGAC--------AGACTTTGTA-CCCCCTTGTCTCCACACTATGA--GTTAG--AAAAAGTAGGAAGGA-CTTAAGTATCTTGTTTATACATTAAAC---
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       702892 528 -   2910086 --TC-TTTTTCCCCCCAAT-CTTCCTATGTAT--CATAAAGTAGATTTACACATCCT-AACCAAAGGCAGTCTTCACCCAGACAGGCATTCAATCCATAAATT---------AA-AAACCCAAGTGTTGCCATCAACTCAA----CATCATTCTTCACAAGCTTTCCAAGGAAGACCTCTTACAT-CACTACCTAGAAGCCGATATGTACAGATC------CCTAGCATAT----------------TCAAGTTTTCAAATCTAA-ATCACCTGGCAAATGATCATGAATTCCTCGGTTTACAGGTGTGGTGCAGACTCTACTGAAATCCAGAGAATTATCCAACATGGCATTTATCCTTCGAAAGATATTGGCATTGCTACATGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACATAG------GGAAAAAAAGATATTTAGGTTT---------------------------------TCTATACTCCTTTATGAC----------ACTTTGTA-CCCCCTTCTCTCCACACTATGA--GTTAG--ATAAAGTAGGAAGGA-CTTAAGTATCTTGTTTATACATTAAAA---
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40723878 531 +  42888418 --TCTTTTTTCCCCTCAAT-CTTCCTATGCAT--CATAAAGTAGATTTACACATCCT-AACCAAAGGCAGTCTTCACCCAGACAGGCATTCAATTCATAACCT---------AA-AAACCCAAGTGTTGCCAGCAACTCAA----CATCATTCTTCACAAGTTTTCCGAGGAAGACCTCTTACAT-CACTACCGAGAAGCAGATCTGTACAGATC------CCTAGTACAT----------------TCAAGTTTTCAAATCTAA-ATCACCTGGCAAATGATCATGAATTCCTCGGTTTACAGGTGTAGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATTCTTCGAAAGATGTTGGCATTGCTACATGTGGAGAGAGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCTGCTTCTTCTTCCTAGACATAG------GGAAAAAAAGATATTTAGGTTT---------------------------------TCTATACTCCTTTATGAC--------AGACTTTGTA-CCCTCTTCTCTCCACACTATGA--GTTAG--ATAAAGTAGGAAGGA-CTTAAATATCTTGTTTATACATTAAAA---
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             718302 540 -  36342412 --T--CCTTTTTACACAAT-CTTCCCATGTAT--CATAAAAAAAAGTC-TACATCCT-CATCAGAATCAGTCTTCACCCACACAGAGATCCAACCCACAAG-TAAACCAT--AA-AGGGGC-AGTATTACCAAAGACTCAACCATCATCATTCTTCAAAGGCTTCCCAATGGAGACCACCAACATGCACTGCCTAGAAGCTG-TTTGTACACCTATCTAACCCTACTGCTA----------------CCAAGTTTTCAAATCTAA-ATCACCTGGCAAATGATCATGAATTCCTCGGTTTATGGGTGTGGTGCAGACTCTACTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTCGAAAGATATTGGCATTACTACATGTGGAGAGTGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTTATCCTTCCCGCTTCTTCTTCCTAAACATAG---------AGAAAAAATATTTAGGTTT---------------------------------TCTACACTCCTTTCAGAC--------AGACTTTGCACTGCCTTTCTCTCAACCC----A--ATACC--ATAAGTTTTCAAGAA-CTTGAGTTTCTTGCTTATATGTTAAAATAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81435973 523 + 145441459 --T--CTTTTTAATTCAACTCTTCCTGTGCATCACACAAAACAGATT---ATTCTGT-AACTACAGGCAGTCTCCACACATGAGGGGATCCAATCCATAATACAAACCAT-GAA-ATGGGTAAATACTGCCAGAGACTCAG----TGT-GCTCTTCACAGGCCTCC--AATAAGCCCTCTAGCATGCACTACTTAGCTGCAGTTCTGTACAA--G------CCCTGTGCAT----------------CCGA-TTTTCAAATCTCACGTTACCTGGCAACTGATCATGAATTCCTCGATTTATAGGTGTTGTACAGACTTTACTGAAGTCCAGTGAATCATCCAAAATGGCATTTATCCTTCGAAAGATATTGGCATTGCTACATGTAGAGAGTGCAGGAACTTCTTGGTTGTCCCAGCAATCCTTTATTCTTCCTGCTGCTTCTTCCTAGAAATGA---------AGAAAACATGCTTGGGTTT---------------------------------TCTATATTCACATAGAAT-------------------GTTATTTTCAACAATACCATGA--ACTAG--AAAAAGCAACAAAGA-CTTCATTTTACTGCCTACACATCAATGCAC
i mm10.chr7                 I 971 C 0
s canFam3.chr3               54480480 568 +  91889043 ---C-CTTTTCTATCCAGT-CTTTATATGCAT--CATAAAATAGATTTGCGTATTAGAAATCAAAGGCAGTCTTCACCCAGAGA---ACCCAATGCACAAAGTGAGCTACAAAA-AAGGGCAAGGATTACCAAAGATTCAG------TCATTCTTCACAGG--TCATGAGAAAG--------------CTGCCCAGAAACAGCTCTACATACATA------CATAGCGTATATACAAAAATATTTGCTCAAGTTTTCAAGTCTAA-GTCACCTGGCAAATGATCATGAATTCCTCGGTTTATGGGTGTAGTGCAGACTCTATTGAAATCCAGAGAATTATCCAATATGGCATTTATCCTTTGAAAGATACTAGCATTGCTACATGTGGAGAGCGCAGGTGCTTCCTGGTTGTCTCGACAATCTTTTATCCTTCCAGCTTCTTCTTCCTAGACACAG---------AAAAAAGATATTTAGGTTTTCTTCCTAGATGAAGAAAAGATGCTTAGGTTTCTCTATACTCCTTTACGAT--------AAATACC----CCTCCTTCCTCCTAAACCAACACTATGAG--ATAAAGTAACAAGGAGCTGAAATTTCTTGCCTATATATTAAAATGc
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1931343 540 +   3943991 CAT--TTTTTTACCCAAAT-TTTCCTGCATAG----------AAATTTCTACATTCT-AATCAAAGGCAATCTCCACCGAGATGGGGACCCAATTCACAAAATAAACCAC--AACAGGGGAAAACAGTGCCAGAGACTCAA----TGTCATATTTAATA-GCCTTCACAAGAAGTCCTCCTACAAGTGCTGCTTAGAAGT---TCTATATACAGG------CCTAGCACAT----------------TCAAGTTTTCAAATCTAA-ATCACCTGGCAAATGATCATGAATTCCTCGATTTATGGGTGTAGTGCAGACTCTACTGAAATCCAGGGAATTATCCAACATGGCATTTATCCTTCGAAAGATACTGGCATTGCTACACGTGGAGAGCGCAGGTGCTTCCTGGTTGTCCCAGCAATCTTTGATCCTTCCCGTTTCGTCTTCCTATACACAG---------AGAAAAGATATTTAGGTTT---------------------------------TCTACCTTGCTCTACAAGAAATTCAGAGACTGTGTACCCCCATTCTCCCAACTCTACAAC-ATTTGTAAGAAAGTAACAAGGA-CTTGAATTTCTTGACTACACATTAAAATAT
i dasNov3.JH570731          C 0 C 0

a score=441798.000000
s hg38.chr15_KI270850v1_alt    416595 36 +    430880 ttaatgagtgtttactatgagctaagtactc----ggaaC
s panTro5.chr15              63569049 36 +  83230942 ttaatgagcgtttactatgagctaagtactc----ggaac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80525979 36 +  99763055 ttaatgagcgtttactatgagctaagtactc----ggaaC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       126168 36 -   1709092 ttaatgagcatttactatgagctaagtactC----GGAAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17288205 36 - 121039945 TTAGTGAGTGTTTACTATGAGCTAAGTACTC----CGAAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60962121 36 + 169600520 TTAATGAGTGTTTACTATGAGCTAAGTACTC----GGAAC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108488864 36 - 171882078 TTAACGAGGGTTTACTATGAGCTAAGTACTC----GGAAC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       105369 36 -   2311642 TTAATGAGTGTTTACTATGAGCTAAGTACTC----GGAAC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        97438 36 -   1987038 tcaatgagtgtttactatgagctaagtactc----ggaaC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21178911 36 -  24206276 TTAATGAGTGTTTACTATGAGCTAAGTACTT----GGAAC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       120731 36 -   1397330 TTAATGAGTGTTTACTATGAGCTAAGTACTC----GGAAC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       118787 36 -   1784207 TTAACGAGTGTTTACTATGAGCTAAGTACTC----GGAAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22325515 35 + 158406734 -TAATAAGTGTTTACTATGAGCTAAGTACTC----AGAAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50552710 35 +  54856640 -TAATAAGTGTTTACTATGAGCTAAGTACTC----AGAAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       703420 34 -   2910086 -TAAT-AGTGATTACTATGAGCTAAGTACTC----AGAAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40724409 35 +  42888418 -TAATAAGTGTTTACTATGAGCTAAGTACTC----AGAAC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             718842 40 -  36342412 GTAATGAGTATTTACTAGGAGCAAGGTACTCTGAGAGAAC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81436496 36 + 145441459 CGAATGAATGTTTATTATTAACAAAGTACTC----AGAAC
i mm10.chr7                 C 0 I 678
s dasNov3.JH570731            1931883 40 +   3943991 TTAGTGAATGCTTACTATGATTAAGGTACTATGAGAGGAC
i dasNov3.JH570731          C 0 C 0
e canFam3.chr3               54481048  0 +  91889043 C

a score=244919.000000
s hg38.chr15_KI270850v1_alt    416631 23 +    430880 TGTAAG-----AAAAAAAT-ACCAAAATA
s panTro5.chr15              63569085 23 +  83230942 tgtaag-----aaaaaaat-acCAAAATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80526015 23 +  99763055 TGTAAG-----AAAAAAAT-ACCAAAATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       126204 23 -   1709092 TGTAAG-----AAAAAAAT-ACCAAAATA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17288241 23 - 121039945 TGTAAG-----AAAAAAAT-ACCAAAATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60962157 23 + 169600520 TGTAAG-----AAAAAAAT-ACCAAAATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108488900 23 - 171882078 TGTAAG-----AAAAAAAT-ACCAAAATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       105405 23 -   2311642 TGTAAG-----AAAAAAAT-ACCAAAATA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        97474 23 -   1987038 TGTAAG-----AAAAAAAT-ACCAAAATA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21178947 23 -  24206276 TGTAAG-----AAAAAAAT-ACCAAAATA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       120767 23 -   1397330 TGTAAG-----AAAAAAAT-ACCAAAATA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       118823 23 -   1784207 TGTAAG-----AAAAAAAT-ACCAAAATA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22325550 24 + 158406734 TGTAAG-----AAAAAAATAACCATAATA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50552745 24 +  54856640 TGTAAG-----AAAAAAATAACCACAATA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       703454 23 -   2910086 TGTAAG-----AAAAAAATAACCATAGt-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40724444 24 +  42888418 TCTAAG-----AAAAAAATAACCATAATA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             718882 28 -  36342412 TGTAAGAAGGAAAAAAAAC-ATCAAAATA
i otoGar3.GL873530          C 0 I 1898
s dasNov3.JH570731            1931923 22 +   3943991 TGTAAG------GGAAAAC-ACTAAAATA
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81436532 678 + 145441459 I
e canFam3.chr3               54481048  0 +  91889043 C

a score=10920.000000
s hg38.chr15_KI270850v1_alt    416654 1 +    430880 T
s panTro5.chr15              63569108 1 +  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80526038 1 +  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       126227 1 -   1709092 T
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17288264 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60962180 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108488923 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       105428 1 -   2311642 T
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        97497 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21178970 1 -  24206276 T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       120790 1 -   1397330 T
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       118846 1 -   1784207 T
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22325574 1 + 158406734 T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50552769 1 +  54856640 T
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40724468 1 +  42888418 T
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1931945 1 +   3943991 T
i dasNov3.JH570731          C 0 I 1306
e mm10.chr7                  81436532 678 + 145441459 I
e canFam3.chr3               54481048 0 +  91889043 C
e cebCap1.NW_016107610v1       703477 0 -   2910086 C
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=14493035.000000
s hg38.chr15_KI270850v1_alt    416655 1509 +    430880 TCTTGGCCAATTTGTggaaaaatttccacaaaggatactattaaggaagagaatcaagcaccaggatttaaggcaaaaaggggtaggctaactc-tactagttttctacaaatatagtcaggtttatgattaggattgcctttatctataaagctgctaacctctgggccttaagggaaaaggtaaacaccagctgccagtcttttggttgtacaacaagaaggtctgg---acaagaactctttttcagaattggttcaattgatattttgttcctggagtcagaaagtaccttgccagtaaaggactttttttaatatattaaaacacttaatgagtgtttatgatgaacaaggtactcagaagttcttttaatactggacaatgcccctggccacccagaatgccatgaattc---aac-----aacaaagaggtatacatgcccccaaatacaacatctctaagtcagcctccagatcaaggggtcataaagacctttaaggctcattacacatgctactctacagaaaggattgttaatgctgtggaagagaaccccaatagagagaaggtcatgaaagtctagaagaattacaccagtgacaatgccatcattgttacagaaaaatccatgaaagccatcatgcccaaaataataaattcctgct-----------taaaaaaactgtttccagatgttgtacatgacttcaca-gatttaccacagagccaatacaggaaatcatgaaagaaactgtagatatgacaaaaaaaggttgggagtgaagatttccaagacatggaccttggagaaatccaagagttaa-------cataccagaggaattagcagaagacaatctgatagagatgagtgctccaaaccagtgccagacatggaagacgatgttgaagtagcaatgccagaaaacatattgacattagatgatctggcaaaagggttccgattattcaaggctgcttttgacttcttttacaatacagacccttctattacacaggcactgaaactaacgcaaatggtggaattaggattggtaccacatagaaacatttttacagaaatgaaaaagcaaaaagtcagacag-------aaattatttctgtaaagttacactgactgtgcctgcttctccttacatccgctccacatccttccacctttgccacccctg------------------------------agagagcaagaccaatcaatccttcctcttcctcggcctgctcaatgtgaaaacagtaaatatgaagatcttt---atgattcacttccacttaatgaacagtaaatatattttctc-ttatgatttt-ctagtaacatt---ttttctctagcctactttatcgtaagaatacgg--tataaaatacatgtaacatacaaaacatgtgatcaactgtttatgttatcggtaaggct-----------------------------------------t-ccggtcaacagcaggctattagtcaagttttgggggagtc-aaagttatacatagatatttgactgt-gggggttggtcctcctaactcccacactgtccaagagtcaactgGacta
s panTro5.chr15              63569109 1508 +  83230942 TCTTGGCCAATTCGTggaaaaatttccacaaaggatactattaaggaagagaatcaagcaccaggatttaaggcaaaaaggggtaggctaactc-tactagttttctacaaatatagtcaggtttatgattaggattgcctttatctataaagctgctaacctctgggccttaagggaaaaggtaaacaccagctgccagtctttcggttgtacaacaagaaggtctgg---acaagaactctttttctgaattggttcaattgatattttgttcctggagtcagaaagtaccttgccagtaaaggactttttaaaatatactaaaacacttaatgagtgtttatgatgaacaaggtactcagaagttcttttaatactggacaatgcccctggccacccagaatgccatgaattc---aac-----aacaaagaggtatacatgcccccaaatacaacatctctaagtcagcctccagatcaaggggtcataaagacctttaaggctcattacacatgctactctacagaaaggatcgttaatgctgtggaagagaaccccaatagagagaaggtcatgaaagtctagaagaattacaccagtgacaatgccatcattgttacagaaaaatccatgaaagccatcatgcccaaaataataaattcctgct-----------taaaaaaactgtttccagatgttgtacatgacttcaca-gatttaccacagagccaatacaggaaatcatgaaaaaaactgtagatatgacaaaaaa-ggttgggagtgaagatttccaagacatggaccttggagaaatccaagagttaa-------cataccagaggaattagcagaagacaatttgatagagatgagcgctccaaaccagtgccagacatggaagacgatgttgaagtagcaatgccagaaaacatattgacattagatgatctggcaaaagggttccgattattcaaggctgcttttgacttcttttacaatacagacccttctattacacaggcactgaaactaacgcaaatggtggaattaagattggtaccatatagaaacatttttacagaaatgaaaaagcaaaaagtcagtcag-------aaattatttctgtaaagttacactgactgtgcctgcttctccttacatccgctccacatccttccacctttgccacccctg------------------------------agagagcaagaccaatcaatccttcctcttcctcagcctgctcaatgtgaagacagtaaatatgaagatcttt---atgattcacttccacttaatgaacagtaaatatattttctc-ttatgatttt-ctagtaacatt---ttttctctagcttactttatcgtaagaatacgg--tataaaatacatgtaacatacaaaacatgtgatcaactgtttatgttattggtaaggct-----------------------------------------t-ccggtcaacagcaggctattactcaagttttgggggagtc-aaagttatacatagatatttgactgt-ggggggtggtcctcctaactcccacactgtccaagagtcaactgGacca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80526039 1508 +  99763055 TCTTGGCCAATTCGTggaaaaatttccacaaaggatactattaaggaagagaatcaagcaccaggatttaaggcaaaaaggggtaggctaactc-tactagttttctacaaatatagtcaggtttatgattaggattgcctttatctataaagctgctaacctctgggccttaagggaaaaggtaaacaccagctgccagtctttcggttgtacaacaagaaggtctgg---acaagaactctttttctgaattggttcaattgatattttgttcctggagtcagaaagtaccttgccagtaaaggacttttaaaaatatattaaaacacttaatgagtgtttatgatgaacaaggtactcagaagttcttttaatactggacaatgcccctggccacccagaatgccatgaattc---aac-----aacaaagaggtatacatgcccccaaatacaacatctctaagtcagcctccagatcaaggggtcataaagacctttaaggctcattacacatgctactctacagaaaggatcgttaatgctgtggaagagaaccccaatagagagaaggtcatgaaagtctagaagaattacaccagtgacaatgccatcattgttacagaaaaatccatgaaagccatcatgcccaaaataataaattcctgct-----------taaaaaaaccgtttccagatgttgtacatgacttcaca-gatttaccacagagccaatacaggaaatcatgaaaaaaactgtagatatgacaaaaaa-ggttgggagtgaagatttccaagacatggaccttggagaaatccaagagttaa-------cataccagaggaattagcagaagacaatttgatagagatgagtgctccaaaccagtgccagacacggaagacgatgttgaagtagcaatgccagaaaacatattgacattagatgatctggcaaaagggttccgattattcaaggctgcttttgacttcttttacaatacagacccttctattacacaggcactgaaactaacgcaaatggtggaattaagattggtaccatatagaaacatttttacagaaatgaaaaagcaaaaagtcagccag-------aaattatttctgtaaagttacactgactgtgcctgcttctccttacatccgctccacatccttccacctttgccacccctg------------------------------agagagcaagaccaatcaatccttcctcttcctcagcctgctcaatgtgaagacagtaaatatgaagatcttt---atgattcacttccacttaatgaacagtaaatatattttctc-ttatgatttt-ctagtaacatt---ttttctctagcttactttatcgtaagaatacgg--tataaaatacatgtaacatacaaaacatgttatcaactgtttatgttattggtaaggct-----------------------------------------t-ccagtcaacagcaggctattactcaagttttgggggagtc-aaagttatacatagatatttgactct-ggggggtggtcctcctaactcccacactgtccaagagtcaactgGacta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       126228 1508 -   1709092 TCTTGGCCAATTCGTggaaaaatttccacaaaggatactattaaggaagagaatcaagcaccaggatttaaggcaaaaaggggtaggctaactc-tactagttttctacaaatatagtcaggtttatgattaggattgcctttatctataaagctgctaacctctgggccttaagggaaaaggtaaacaccagctgccagtctttcggttgtacaacaagaaggtctgg---acaagaacccttttcctgaattggttcaattgatattttgttcctggagtcagaaagtaccttgccagtaaaggacttttttttatataataaaacacttaatgagtgtttatgatgaacaaggtactcagaagttcttttaatactggacaatgcccctggccacccagaatgccatgaattc---aac-----aacaaagaggtatacatgcccccaaatacaacatctctaagtcagcctccagatcaagaggtcataaagacctttaaggctcattacacatgctactctacagaaaggattgttaatgctgtggaagagaaccccagtagagagaaggtcatgaaagtctagaagaattacaccagtgacaatgccatcattgttacagaaaaatccatgaaagccatcatgcccaaaataataaattcctgct-----------taaaaaaactgtttccagatgttgtacatgacttcaca-gatttaccacagagccaatacaggaaatcatgaaagaaactgtagatatgacaaaaaa-ggttgggagtgaagatttccaagacatggaccttggagaaatccaagagttaa-------cataccagaggaattagcagaagacaatttgatagagatgagtgctccaaaccagtgccagacatggaagacgatgttgaagtagcaatgccagaaaacatattgacattagatgatctggcaaaagggttccgattattcaaggctgcttttgacttcttttacaatacagacccttctattacacaggcactgaaactaacgcaaatggtggaattaggattggtaccacagagaaacatttttacagaaatgaaaaagcaaaaagtcagacag-------aaactatttctgtaaagttacactgactgtgcctgcttctccttccatccgctccacatccttccccctctgccacccctg------------------------------agagagcaagaccaatcaatccttcctcttcctcggcctgctgaatgtgaagacagtaaatatgaagatcttt---atgattcacttccacttaatgaacagtaaatatattttctc-ttatgatttt-ctagtaacatt---ttttctctagcttactttatcgtaagaatacag--tataaaatacatgtaacatacaaaatatgcaatcaactgtttatgttattggtaaggct-----------------------------------------t-ccggtcaacagcaggctattagtcaagttttgggggagtc-aaagttatacatagatatttgactgt-gggggttggtcctcctaactcccacactgtccaacagtcaactgGacta
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17288265 1526 - 121039945 TCTTGGCCAATTCTTggaaaaatttccacaaaggatattattaaggaagagaatcaagcaccaggatttaaggcaaaaaggggtaggataactc-tactagttttctacaaatatagacaggtttatgattaggattgcctttatctataaagctgctaacctctgggccttaagggaaaaggtaaacaccagctgccagtcttttggttgtacaacaagaaggtctgg---acaagaaccctttctctgaattggttcaattgatattttgttcctgaagtcagaaagtagcttgccagtaaaggacttttt-taatatgtaaaaacacttaatgagtgtttatgatgaacgaggtactcagaagttcttttaataccggacaatgcccctggccacccagaatgccatgaattc---aac-----aacaaagaggtatacatgcccccagatacaacatccctaagtcagcttccagatcaaggggtcataaagacctttaaggatcattacacatgctactctacggaaaggattgttaatgctgtggaagagaaccccaacaaagagaaggtcatgaaagtctaaaagaattacaccagtgacaatgccatcattgttacagaaaaatccatgaaagccatcatgcccaaaacaataaattcctgctaaaaaaaaaaaaaaaaaaactgtttccagatgttgtacatgacttcacaggatttatcacagagccaatacaggaaatcatgaaagaaactgtagatatgacaaaaaa-ggttgggagtgaagatttccaacacatggatcttggagaaatccaagagttaacagacaccataccagaggaattagcagaagacaatttgatagagatgagtgctccaaaccagtgccagacaaggaagacgatgttgaagtagcaatgccagaaaacatattgacattagatgatctggcaaaagggttccgattattcaaggctgcttttgacttcttttacaatacggacccttttatttcacaggcactgaaactaacacaaatggtggaattaggattggtaccacgtagaaacatttttacagaaatgaaaaagcaaaaagtcagacag-------aaattatttctgtaaagttacactgactgtgccagcttctccttccatcccctccacatccttccacctctgccacccc-g------------------------------agacagcaagaccaatcaatccttcctcttcctcagcctgctcaacgtgaagacagtaaatatgaagatcttt---atgattcatttccacttaatgaacagtaaatatattttttc-ttatgatttt-ctagtaacatt---ttttctctagcttactttattgtaagaatacat--tataaaatacatgtaacatacaaaatatgcgatcaactgtttatgttattggtaagcct-----------------------------------------tcccggtcaacagcaggctattagttaagttttaggggagtc-aaagttaaacacagatatttgactgt-gggggttggtcctcctaactcccacactgtccaagagtcaactgGacta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60962181 1510 + 169600520 TCTTGGCCAATTCTTggaaaaatttccacaaaggatattattaaggaaaagaatcaagcaccaggatttaaggcaagaaggggtaggctaactc-tactagttttctacaaatatagtcaggtttatgattaggattgcctttatctataaagctgctaacctctggaccttaagggaaaata-aaacaccagctgccagtctttc-gttgtacaacaagaaggtctagacaacaagaaccctttttctgaattggttcaattgatattttgttcctagagtcagaaattaccttgccagtaaaggacttttt--tatataataaaacacttaatgagtgtttatgataagcaaggtactcagaagttctttaaatactggacaatgcccctggctacccagaatgccataaattc---aac-----aacaaagaggtatacatgcccccaaatacaacatctctaagtcagcctccagatcaaggggtcataaggacctttaaggctcattacacatgctactctatggaaaggattgttaatgc-gtggaagagaaccccaacagagagaatgtcatgaaagtctggaagga-tacaccagtgacaatgccatccctgttacagaaaaatccatgaaagccatcatgcccaaaacaataaattcctgct-----------aaagaaaactgtttccagacgttgtacatgacttcacaggatttgccacagagccaatacaggaaatcatgaaagagactatagatatgacaaaaaa-ggttgggagtgaaggtttccaagacatggatcttggagaaatccaagagttaacagacaccataccagacgaattagcagaagacaatttgatagagatgagtgctccaaaccagtaccagacaaggaagacgatgttgaagtagcaatgccagaaaacaaattgacattagatgatctggc-aaagggttccgattattcaagactgcttttgacttcttttacaatatggacccttctattatacaggcactgaaactaatgcaaacagtggaagaaggattggtaccacatagaaacatttttacagaagtgaaaaagcaaaaagtcagac---------aaattatttctgtaaagttacactgactgtgcctgcttctccttccatcccctccacatccttccacctctgccacccc-g------------------------------agacagcaagaccaatcaatcccccctcttcctcagcctgctcaatgtgaagatggcaaatatgaagatcttt---atgatccacttccacttaatgaacagtaaatatattttctc-ttatgatttt-ctagtaatatt---ttttctctagcttactttattgtaagaatacag--tatataatacatgtaacatacaaaatatgcgatcaactgtttatgttattggtaaggct-----------------------------------------t-ctggtcaacagcaggctactagttaagttttgggggagtc-aaagttatacacagatttttgactgtggggggttggtcctcctaactcccacactgtccaagagtcaactgGacta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108488924 1509 - 171882078 TCTTGGCCAATTCTTggaaaaatttccacaatggatattattaaggaaaagaatcaagcaccaggatttaaggcaagaaggggtaggctaactc-tactagttttctacaaatatagtcaggtttatgattaggattgcctttatctataaaactgctaacctctggaccttaagggaaaata-aaacaccagctgccagtctttc-gttgtacaacaagaaggtctagacaacaagaaccctttttctgaattggttcaatggatattttgttcctagagtcagaaatcaccttgccagtaaaggacttttt--taTATAATAAAACACTTAATGAGTGTTTATGATAAGCAAGGTACTCAGaagttctttaaatactggacaatgcccctggctacccagaatgccataaattc---aac-----aacaaagaggtatacatgcccccaaatacaacatctctaagtcagcctccagatcaaggggtcataaggacctttaaggctcattacacatgctactctatggaaaggattgttaatgc-gtggaagagaaccccaacagagagaatgtcatgaaagtctggaagga-tacaccagtgacaatgccatcactgttacagaaaaatccatgaaagccatcatgcccaaaacaataaattcctgct-----------aaagaaaactgtttccagacgttgtacatgacttcacaggatttaccacagagccaatacaggaaatcatgaaagagactgtagatatgacaaaaaa-ggttgggagtgaaggtttccaagacatggatcttggagaaatccaagagttaacagacaccatagcagacgaattagcagaagacaatttgatagagatgagtgctccaaaccagtaccagacaaggaagacgatgttgaagtagcaatgccagaaaacaaattgacattagatgatctggc-aaagggttccgattattcaagactgcttttgacttcttttacaatatggacccttctattatacaggcactgaaactaatgcaaacagtggaagaaggattggtaccacatagaaacatttttacagaaatgaaaaagcaaaaagtcagac---------aaattatttctgtaaagttacactgactgtgcctgcttctcctgccatcccctccacatccttccacctctgccacccc-g------------------------------agacagcaagaccaatcaatcccccctcttcctcagcctgctcaatgtgaagatggcaaatatgaagatcttt---atgatccacttccacttaatgaacagtaaatatattttctc-ttatgatttt-ctagtaatatt---ttttctctagcttactttattgtaagaatacag--tatataatacatgtaacatacaaaatatgcgatcaactgtttatgttattggtaaggct-----------------------------------------t-ctggtcaacagcaggctactagttaagttttgggggagtc-aaagttatacacagatttttgactgtggggggttggtcctcctaactcccacac-gtccaagagtcaactgGacta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       105429 1510 -   2311642 TCTTGGCCAATTCTTggaaaaatttccacaaaggatattattaaggaaaagaatcaagcaccaggatttaaggcaagaaggggtaggctaactc-tactagttttctacaaatatagtcaggtttatgattaggattgcctttatctataaagctgctaacctctggaccttaagggaaaata-aaacaccagctgccagtctttc-gttgtacaacaagaaggtctagacaacaagaaccctttttctgaattggttcaattgatattttgttcctagagtcagaaattaccttgccagtaaaggacttttt--tatataataaaacacttaatgagtgtttatgataagcaaggtactcagaagttctttaaatactggacaatgcccctggctacccagaatgccataaattc---aac-----aacaaagaggtatacatgcccccaaatacaacatctctaagtcagcctccagatcaaggggtcataaggacctttaaggctcattacacatgctactctatggaaaggattgttaatgc-gtggaagagaaccccaacagagagaatgtcatgaaagtctggaagga-tacaccagtgacaatgccatcactgttacagaaaaatccatgaaagccatcatgcccaaaacaataaattcctgct-----------aaagaaaactgtttccagacgttgtacatgacttcacaggatttaccacagagccaatacaggaaatcatgaaagagactgtagatatgacaaaaaa-ggttgggagtgaaggtttccaagacatggatcttggagaaatccaagagttaacagacaccataccagacgaattagcagaagacaatttgatagagatgagtgctccaaaccagtaccagacaaggaagatgatgttgaagtagcaatgccagaaaacaaattgacattagatgatctggc-aaagggttccgattattcaagactgcttttgacttcttttacaatatggacccttctattatacaggcactgaaactaatgcaaacagtggaagaaggattggtaccatatagaaacatttttacagaaatgaaaaagcaaaaagtcagac---------aaattatttctgtaaagttacactgactgtgcctgcttctccttccatcccctccacatccttccacctctgccacccc-g------------------------------agacagcaagaccaatcaatcccccctcttcctcagcctgctcaatgtgaagatggcaagtatgaagatcttt---atgatccacttccacttaatgaacagtaaatatattttctc-ttatgatttt-ctagtaatatt---ttttctctagcttactttattgtaagaatacag--tatataatacatgtaacatacaaaatatgcgatcaactgtttatgttattggtaaggct-----------------------------------------t-ctggtcaacagcaggctactagttaagttttgggggagtc-aaagttatacacagatttttgactgtggggggttggtcctcctaactcccacactgtccaagagtcaactgGacta
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        97498 1509 -   1987038 TCTTGGCCAATTCTTggaaaaatttccacaaaggatattattaaggagaagaatcaagtaccaggatttaaggcaagaaggggtaggctaactc-tactagttttctacaaatatcgtcaggtttatgattaggattgcctttatctataaagctgctaacctctggaccttaagggaaaata-aaacaccagctgccagtctttc-gttgtacaacaagaaggtctagataacaagaaccctttttctgaattggttcaattgatattttgttcctagagtcagaaattaccttgccagtaaaggacttttt--tatataataaaacacttaatgagtgtttatgataagcaaggtactcagaagttctttaaatactggacaatgcccctggctacccagaatgccataaattc---aac-----aacaaagaggtatacatgcccccaaatacaacatctctaagtcagcctccagatcaaggggtcataaggacctttaaggctcattacacatgctactctatggaaaggattgttaatgc-gtggaagagaaccccaacagagagaatgtcatgaaagtctggaaggattacaccagtgacaatgccatcactgttacagaaaaatccatgaaagccatcatgcccaaaacaataaattcctgct-----------aaagaaaactgtgtgcagatgttgtacatgacttcacaggatttaccacagagccaatacaggaaatcatgaaagagactgtagatatgacaaaaaa-ggttgggagtgaaggtttccaagacatggatcttggagaaatccaagagttaacagacaccataccagacgaattagcagaagacaatttgatagagatgagtgctccaaaccagtaccagacaaggaagacgatgttgaagtagcaatgccagaaaacaaattgacattagatgatctggc-aaagggttccgattattcaagactgcttttgacttcttttacaatatggactcttctattatacaggcactgaaactaatgcaaacagtggaagaaggattggtaccacatagaaacatttttacagaaatgaaaaagcaaaaagtcagac---------aaattatttctgtaaagttacactgactgtacctgcttctccttccatcccctccacatccttccatctctgccacccc-g------------------------------agacagcaagaccaatcaatcccccctcttcctcagcctgctcaatgtgaagatggcaaataagaagatcttt---atgatccacttccacttaatgaacagtaaatatattt--tc-ttatgatttt-ctagtaatatt---ttttctctagcttactttattgtaagaatacag--tatataatacatgtaacatacaaaatatgcgatcaactgttcatgttattggtaaggct-----------------------------------------t-ctggtcaacagcaggctactagttaagttttgggggagtc-aaagttatacacagatttttgactgtggggggttggtcctcctaactcccacactgtccaagagtcaactgGacta
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21178971 1550 -  24206276 TCTTGGCCAATTCTTggaaaagtttccacaaaggatattattaaggaaaagaatcaaccaccaggatttaaggcaagaaggggcaggctaaccc-tactagttttctacaaatatagtcaggtttatgattaggattgcctttatctataaagctgctaacctctggaccttaagggaaaata-aaacaccagctgccagtctttc-gttgtacaacaagaaggtctagacaacaagaaccctttttctgaattggttcaattgatattttgttcctagagtcagaaattaccttgccagtaaaggacttttt--taTATAATAAAACACTTAATGAGTGTTTATGATAAGCAAGGTACTCAGaagttctttaaatactggacaatgcccctggctacccagaatgccataaattc---aac-----aacaaagaggtatacatgcccccaaatacaacatctctaagtcagcctccagatcaaggggtcataaggacctttaaggctcattacacatgctactctatggaaaggattgttaatgc-gtggaagagaatcccaacagagagaatgtcatgaaagtctggaaggattacaccagtgacaatgccatcactgttacagaaaaatccatgaaagccatcatgcccaaaacaataaattcctgct-----------aaagaaaactgtttccagacgttgtacatgacttcacaggatttaccacagagccaatacaggaaatcatgaaagagactgtagatatgacaaaaaa-ggttgggagtgaaggtttccaagacatagatcttggagaaatccaagagttaacagacaccataccagacgaattagcagaagacaatttgatagagatgagtgctccaaaccagtaccagacaaggaagacgatgttgaagtagcaatgccagaaaacaaattgatattagatgatctggc-aaagggttccgattattcaagactgcttttgacttcttttacaatatggacccttctattatacaggcactgaaactaatgcaaacagtggaagaaggattggtaccacatagaaacatttttacagaaatgaaaaagcaaaaagtcagac---------aaattatttctgtaaagttacactgactgtgcctgcttctcc--ccatcccctccacatccttccacctctgccacccctg------------------------------agacagcaagaccaatcaatcccccc-cttcctcagcctgctcaatgtgaagatggcaaatatgaagatcttt---atgatccacttccacttaatgaacagtaaatatattttctc-ttatgatttt-ctaataatatt---ttttctctagcttactttattgtaagaatacag--tatataatacatgtaacatataaaatatgcgatcaactgtttatgttattggtaaggccaataactggtaagaccaataattggtaaggccaataattggt-aaggtcaacagcaggctactagttaagttttgggggagtc-aaagttatacacagatttttgattgtggggggttggtcctcctaactcccacactgtccaagactcaactgGacta
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       120791 1511 -   1397330 TCTTGGCCAATTCTTggaaaaatttccacaaaggatattattaaggagaagaatcaagcaccaggatttaaggcaagaaggggtaggctaactc-tactagttttctacaaatatagtcaggtttatgattaggattgcctttatctataaagctgctaacctctggaccttaagggaaaata-aaacaccagctgccagtctttc-gttgtacaacaagaaggtctagacaacaagaaccctttttctgaattggttcaattgatattttgttcctagagtcagaaattaccttgccagtaaaggacttttt--tatataataaaacacttaatgagtgtttatgataagcaaggtactcagaagttctttaaatactggacaatgcccctggctacccagaatgccataaattc---aac-----aacaaagaggtatacatgcccccaaatacaacatctctaagtcagcctccaggtcaaggggtcataaggacctttaaggctcattacacatgctactctatggaaaggactgttaatgc-gtggaagagaaccacaacagagagaatgtcatgaaagtctggaaggattacaccagtgacaatgccatcactgttacagaaaaatccatgaaagccatcatgcccaaaacaataaattcctgct-----------aaagaaaactgtgtgcagatgttgtacatgacttcacaggatttaccacagagccaatacaggaaatcatgaaagagactgtagatatgacaaaaaa-ggttgggagtgaaggtttccaagacatggatcttggagaaatccaagagttaacagacaccataccagacgaattagcagaagacaatttgatagagatgagtgctccaaaccagtaccagacaaggaagacgatgttgaagtagcaatgccagaaaacaaattgacattagatgatctggc-aaagggttccaattattcaagactgcttttgacttcttttacaatatgaactcttctattatacaggcactgaaactaatgcaaacagtggaagaaggattggtaccacatagaaacatttttacagaaatgaaaaagcaaaaagtcagac---------aaattatttctgtaaagttacactgactgtacctgcttctccttccatcccctccacatccttccatctctgccacccc-g------------------------------agacagcaagaccaatcaatcccccctcttcctcagcctgctcaatgtgaagatggcaaatatgaagatcttt---atgatccacttccacttaatgaacagtaaatatattttctc-ttatgatttt-ctagtaatatt---ttttctctagcttactttattgtaagaatacag--tatataatacatgtaacatacaaaatatgcgatcaactgttcatgttattggtaaggct-----------------------------------------t-ctggtcaacagcaggctactagttaagttttgggggagtc-aaagttatacacagatttttgactgtggggggttggtcctcctaactcccacactgtccaagagtcaactgGacta
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       118847 1509 -   1784207 TCTTGGCCGATTGTTggaaaaatttccacaaaggatactattaaggaaaagaatcaagcaccaggatttaaggcaagaaggggtaggctaactc-tactagttttctacaaatattgtcaggtttatgattaggattgcctttatctataaagctgctaacctctggaccttaagggaaaata-aaacaccagctgccagtcttg--gttgtacaacaagaaggtctggacaacaagaaccctttttctgaattggttcaattgatattttattcctgaagtcagaaattaccttgccagtaaaggacttttt--tatataacaaaacacttaatgagtgtttatgatgagcaaggtactcagaagttctttatatactggacaatgcccctggctacccagaatgccataaattc---aac-----aacaaagaggtatacatgcccccaaatacaacatctctaagtcagcctccagatcaaggagtcataaggacctttaaggctcattacacatgctactctatggaaaggattgttaatgctgtggaagagaaccccaacagagagaatgtcatgaaagtctggaaggattacaccagtgacaatgccatcactgttacagaaaaatccatgaaagccatcatgcccaaaacaataaattcctgct-----------aaagaaaactgtttccagacgttgtacatgacttcacaggatttaccacagagccaatacaggaaatcatgaaagagactgtagatatgacaaaaaa-ggttgggcgtgaaggtttccaagacatggatcttggagaaattcaagagttaacagacaccataccagaggaattagcagaagacaatgtaatagagatgagtgctctaaaccagtaccagacaaggaagacgatgttgaagtagcaatgccagaaaacaaattgacatta---gatctggc-aaagggttccgattattcaagactgcttttgacttcttttacaatatggacccttctattatacaggcactgaaactaatgcaaacagtggaagaaggattggtaccacatagaaacatttttacagaaatgaaaaagcaaaaagtcagac---------aaattatttctgtaaagttacactgactgtgcctgcttctccttccatcccctccacatccttgcacctctgccacccctg------------------------------agacagcaagaccaatcaatccctcctcttcctcagcctgctcaatgtgaagatggcaaatatgaagatcttt---atgatccacttccacttaatgaacagtaaatatattctctc-ttatgatttt-ctagtaatatt---ttttctctagcttactttattgtaagaatacag--tatataatacatgtaacatacaaaatatgcgatcaactgtttatgctattggtaaggct-----------------------------------------t-ctggtcaacagcaggctactagttcagttttgggggagtc-caagttatatacagatttttgactgtggggggttggtcctcctaactcctacactgtccaagagtcaactgGacta
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22325575 1551 + 158406734 TTTtggccaattcttggaaagaaatccataaaggatactattaaggaagcaaatcaagcaccaggatttagggcaagaagaggtaggctaacttatattagttttctacaaatatagtcaggtttatgattaggactgcctttatctaaaaagctgctagcatctgtgccttaaggaaaaagataaacaccagctgccagcctttcagctatacaagaagaagatctggacaacaagaaccctttttctggattggttccattgatgtcctgtccctgaagtcaggaagtagcttgcgagaaagggacttgct--tatatagtaaaacacttaatgagtgtttatg---agcaaggtattcagaagttcttttaatattggacaatgccccaaaccactcagaatgctatgattttaacaacaatttaac--agaggtatacatgccccaaagtacaacatctctaagtcagcctccagatcaagaggtcataaggacctttaaggctcattacacatgctactctatggaaaggactattaatgctgtggaagagaatgccaatagagagaacatcatgaaagtctggaaagattacaccattgacaatgccatcattgttacagaaaaatccatgaaagccatcatgcccaaaacaataaaatcctgct-----------agagaaaacggtttccagatgttatacatgacttcacaggatttaccacagagccaatacaggaaactatgaaagagactatagatatgacaaaaaa-gattgagagtgaaggttt-----acatggaccttggagaaatccgagtgttaacagacaccataccagaggaattaacag-agacaatttgatagagatgagtgttccaaaccagtgccagacaaggaagacgatgttgaagtaccaacgtcagaaaacaaattgacatttgatgatctggcagaagggttccaattattcaagactgcttttgacttcttttacaatatatacccttctattatacaggcactgaaactaacgcaaacagtggaagaaggattggtacagtatagaaacatttttagagaaatgaaaaagcaaaaagtcacacagaaattgcgaattatttctgtaaagttacactgactgtgcctgcttttccttccatcccctccacgtccttccacctctgccacccctgagacagcaaatagttatacataactagat-acacagcaagaccaatcaatccctcctcttcctcagcctcctcaacgtaaagatggcaaatgtgaagatctttatgatgattcgcttccacttaatgaacagtaaatatattttctctttatgattttcctagtaacattttcttttctctagcttactttattgtaagaatacaggatatataatacatgaaacatacaaaatatgtgatcagctgtttatgttatcggtaaggc-------------------------------------------------caacagtaagcta----ttaagttttaggggagtcaaaagttatacacagatttttgactgg-ggggattggtgctcctaactcccgcattgtccaagagtcaactgAACTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50552770 1554 +  54856640 TCTTGGCCAATTCTTggaaaaaattccagaaaggatactattaaggaagcaaatcaagcaccaggatttagagcaagaagaggtaggctaacttacactagttttctacaaatgtagtcaggtttatgattaggactgcctttatctaaaaagctgctagcatctgggccttaaggaaaaagataaacactagctgccagcctttcagctatataagaggaggctctggacaacaagaaccctttttctggattggttccattgatgtcttgtccctgaagtca-gaagtacctcgccagaaacggacttgct--tatatagtaaaacacgtaatgagtgtttatgataagcaaggtactcagaagttcttttaatactggacaatgccccaggccacccagaatgctatgaattt---aacaatttaacaaagaggtatacatgccccaaagtacaacatctgcaagtcagcctgctgatcaaggggtcgtaaggacctttaagtctcattatacatgctattctatggaaaggattatcaatgctgtggaagagaaccccaacagagagaacatcgtgaaagtctagaaagattacaccattgacgatgccatcattgttacagaaaaatccatgaaagccatcacgcccaaaacaataaaatcctgct-----------agagaaaacggtttccagatgttacacatcacttcacaggatttaccacagagccaatacaggaaatcatgaaagagaccgtagatatgacaaaaaa-gactgagagtgaaggttt-----acgtgaaccttggagaaaacagagagttaacagacaccataccagaggaattaacag-agacaatttgatagagatgagtgctccaaaccagtgccagacaaggaagatgatgttgaagtaccaatgtcagaaaacaaattgacatttgatgatctggcagaagggttccaattattcaagactgcttttgacttctttaacaatatgtgccctttcattatacaggcaccgaaactaatgcaaacggtggaagaaggatt-gtacagtatagaaacatttttacagaaatgaaaaagcaaaaagtcacacagaaatcacaaattatttctgtaaagttacattgactgtgcctgcttctccttccatcccctccacctccttccacctctgcca--cctgtgatagcaaatagttatacataactagat-acacagcaagaccaatcaatccctcctcttcctcagcctgctcaaggtgaagacggcaaatgtgaagatctttatgatgattcgcttccacttaatgaacggtaaatgtattttctctttatgatttccctagtaacattttcttttctttagcttactttattgtaagaatacag--tatataatacaagtaacatacaaaatatgtgatcagctgtttatgttattggtaaggct-----------------------------------------t-ccagtcaacagcaagcta----ttaagttttaggggagtcaaaagttatacacagatttttgactgt-gggggttggtgctcctaactcccacattgtccaagagtcaactgAacta
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       703477 1548 -   2910086 ---------attcttggaaaaaattccaacaaggatactattaaggaagcaaatcaagcaccaggatttagggcaagaagaggtagactaacttatactagttttctacaaatatagtcaggtttatgattaggactgcctttatctaaaaagctgctagcatctgggccttaaggaaaaagataaacaccagctgccagcctttcagctatacaagaagaagatctggacaacaagaaccctttttctggattggttccattgatgtcttgtccctgaagtcaggaagtaccttgccaggaagggacttgct--tatatagtaaaacacttaatgagtgtttatgatgagcaaggtactcagaagttcttttaatattgaacaatgccccaggccacacagaatgctatgaattt---aacaatttaacaaagaggtatacatgccccaaagtacaacacctgcaagtcggcctccagattaaggggttgtaaggaactttaaggttcattacacatgctactctatggaaaggattattaatgctgtggaagagaaccccaatagagagaacatcattaaagtctggaaagattacaccattgacaatgccatcattgttgcagaaaaatccctgaaagccatcatgccccaaatcataaaatcctgct-----------agagaaaaccgtttccagatgttatacatgacttcacaggatttaccacagagccaatacaggaaatcatgaaagagactatagatatgacaaaaaa-gactgagagtgaaggttt-----acatggaccttggagaaaaccgagagttaacaggcaccataccaaaggaattaacac-agacaatttgatagagatgagtgctccaaaccagtgccagacaaggaagatgatgttgaagtaccaatgtcagaaaacaaattgacatttgatgatctggcagaagggttccaattattcaagactgcttttggcttcttttacaatatgtacccttctattatacaggcactgaaactaaagccaatggtggaagaaggattggtacagtatagaaacatttttacagaaatgaaaaagcaaaaagtgacacagaaattatgaattatttctgtaaagttacactgactgtgcctgcttctccttccatcccctccacgtccttccacctctgccacccctgagatagcaaatagttatacataactagat-acacagcaagaccaatcaatccctcctcttcctcagcctgctcaacgtaaagacggcaaatgtgaagatctttatgatgattcgcttccacttaatgaacagtaaatatattttctctttatgattttcctagcaacattttcttttctctagcttacttcattttaagaatacag--tatataatacatgtaacatacaaaatatgtgatcagctgtttatgttattggcaaggct-----------------------------------------t-ctggtcaacagtaagcta----ttaagttttaggggagtc-aaagctatacacagatttttgactgt-gggggttggtgctcctaactcccgcattgtccaagagtcaactgAatta
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40724469 1550 +  42888418 TCTTGGCCAACTCTTggaaaaaattccacaaaggatattataaaggaagcaaatcaagcaccaggatttagggcaagaagaggtaggctaacttatactagttttctacaaatatagtcaggtttatgattaggactgtctttatctaaaaagctgctaacatctgggccttaaggaaaaagataaacaccagctgtcagcctttcagctataaaagaagaagatgtggacaacaagaaccctttttctggattggttccattgatgtcttgtccccgaagtcaggaagtaccttgccagaaagggacttgct--tatatagtaaaacacttaacgagtgtttatgatgagcaaggtactcaggagttcttttaatattggacaatgccccaggccacccagaatgctacgaatttaacaacaatttaacaaagaggtatacatg--ccaaagtaccacatcgctaagtcagcctccagatcaaggggtcgtaaggacctttaaggctcattacacatgctactctatggaaaggattattaatgctgtggaagagaaccccaatagagagaacatcatgaaaatctgaaaagattacaccattgataatgtcatcattgttacagaaaaagccatgaaagccatcatgcccaaaacaataaaatcctgct-----------agagaaaacggtttccagatgttatacatgacttcacaggatttaccacagagccaatacagaaaatcatgaaagagactatagatatgacaaaaaa-gattgagagtgaaggttt-----acctggaccttggagaaatctgagagttgacacacaccataccagaggaattaatag-agacaatttgatagagatgagtgctccaaaccagtgacagacaaggaagatgatgttgaagtaccaatgtcagaaaacaaattgacatttgatgatctggcagaagggttccaattatccaagactgcttttgacttcttttacagtatgtacccttctattatacaggcactgaaactaacacaaacagtggaagaaggattggtacagtatagaaacatttttagagaaatgaaaaagcaaaaagtcacacagaaattatgaattatttctgtaaagttacactgactgtgcctgcttctccttccatcccctccacgtccttccacctctgccacccctgagatagcaa--agttatacataactagataacacagcaagaccaatcattccctcctcttcctcagcctgctcaacgtgaagatggcaaatgtgaagatctttatgatgatctgcttccacttaatgaacagtaaatatattttctctttatgattttcctagtaacattttcttttctctagcttactttattgtaagaatacag--tatataatacatgtaacatacaaaatatgtcatcagctgtttatgttattggtaaggct-----------------------------------------t-ccagtcaacag------------taagttttaggggagtcaaaagttatacacagatttttgactgt-gggggttggtgctcctaactcccgcattgtccaagagtcaactgAacta
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81436532  678 + 145441459 I
e dasNov3.JH570731            1931946 1306 +   3943991 I
e canFam3.chr3               54481048    0 +  91889043 C
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=3063886.000000
s hg38.chr15_KI270850v1_alt    418164 331 +    430880 aaaaccaatgaactgtaca--ttaa--aggtgaactttagggtatgtagat----tttatgtcaatacagctgttt--aaaaaTTTT-CATtctgccatttattggctgtgtgatatca---cagttacttaacctct--atccctcagtttccccatttgtgaaatggaaaaagga----taccaactttttgatgacatatgtaaagcattttgca-------tggcatacagtagctgctA-ATTTGTATCTGCAAACACTAATTATTGAATACAAGAGAGGTAAGTACCAACAGTGGTAAAACCACCC-----AAACTGATTAAGTTATACAACTCTATGTGGTCATTATTAGTACATAC
s panTro5.chr15              63570617 331 +  83230942 aaaaccaatgaactgtaca--ttaa--aggtgaactttagggtatgtagat----tttatgtcaatacagctgttt--aaaaaTTTT-CATtctgccatttattggctgtgtgatatca---cagttacttaacctct--atgcctcagtttccccatttgtgaaatggaaaaagga----taccaactttttgatgacatatgtaaagcattttgca-------tggcatacagtagctgctA-ATTTGTATCTGCAAACACTAATTATTGAATACAAGAGAGGTAAGTACCAACAGTGGTAAAACCACCC-----AAACTGATTAAGTTATACAACTCTATGTGGTCATTATTAGTACATAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80527547 331 +  99763055 aaaaccaatgaactgtaca--ttaa--aggtgaactttagggtatgtagat----tttatgtcaatacagctgttt--aaaaaTTTT-CATtctgccatttattggctgtgtgatatca---cagttacttaacctct--atgcctcagtttccccatttgtgaaatggaaaaagga----taccaactttttgatgacatatgtaaagcattttgca-------tggcatacagtagctgctA-ATTTGTATCTGCAAACACTAATTATTGAATACAAGAGAGGTAAGTACCAACAGTGGTAAAACCACCC-----AAACTGATTAAGTTATACAACTCTATGTGGTCATTATTAGTACATAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       127736 331 -   1709092 aaaaccaatgaactgtaca--ttaa--aggtgaactttagggtatgtagat----tttatgtcaatacagctgttt--aaaaaTTTT-CATtctgccatttattggctgtgtgatatca---cagttacttaacctct--atgcctcagtttccccatttgtgaaatggaaaaagga----taccaactttttgatgacatatgtaaagcattttgca-------tggcatacagtagctgctA-ATTTGTATCTGCAAACACTAATTATTGAATACAAGAGAGGTAAGTACCAACAGTGGTAAAACCACCC-----AAACTGATTAAGTTATACAACTCTATGTGGTCATTATTAGTACATAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17289791 331 - 121039945 aaaaccaatgaactgtaca--ttaa--aggtgaactttagggtatgtagac----tttaggtcaatacagctgttt--aaaaaTTTT-CATtctgccatttattggctgtgtgatatca---cagttacttaacctct--atgcctcagtttccccatttgtgaaatggaaaaggga----taccaactttttgatgacatatgtaaagcattttgca-------cggcatacagtagctgctA-ATTTGTATCCACAAACATTAATTATTGAATACAAGAGAGGTAAGTACCAACAGTGGTAAAACCACCC-----AAACTGATTAAGTTATACAACTCTATGTGGTTATTATTAGTACATGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60963691 330 + 169600520 aaaacccatgaactgtaca--ttaa--aggttaactttagggtaggtagat----tttatgtcaatacagctgttttaaaaaatttt-cattctgccatttactggctgtgtgatgtca---cagttacttaacctct--atgcctcagtttccccacttgttaaatggaaaaagga----tacaaactttttgatgacatatgtaaagcattttgca-------tggcatacagta---GTTA-TTCTGTATCTGGAAACATTAACTATTAAATACAAGAGAGGTAAGTACCAACAGTGGTAAAATCACCC-----AAACTGATTAAGTTATACAACTGTATGTGGTCATTATAAGTACATAC
i rheMac8.chr7              C 0 I 22
s macFas5.chr7              108490433 330 - 171882078 aaaacccatgaactgtaca--ttaa--aggttaactttagggtaggtagat----tttatgtcaatacagctgttttaaaaaatttt-cattctgccatttactggctgtgtgatgtca---cagttacttaacctct--atgcctcagtttccccacttgttaaatggaaaaagga----tacaaactttttgatgacatatgtaaagcattttgCA-------TGGCATACAGTA---GTTA-TTCTGTATCTGGAAACATTAACTATTAAATACAAGAGAGGTAAGTACCAACAGTGGTAAAATCACCC-----AAACTGATTAAGTTATACAACTGTATGTGGTCATTATAAGTACATAC
i macFas5.chr7              C 0 I 13
s macNem1.NW_012011945v1       106939 329 -   2311642 aaaacccatgaactgtaca--ttaa--aggttaactttagggtaggtagat----tttatgtcaatacagctgtttt-aaaaaTTTT-CATtctgccatttactggctgtgtgatgtca---cagttacttaacctct--atgcctcagtttccccacttgttaaatggaaaaagga----tacaaactttttgatgacatatgtaaagcattttgca-------tggcatacagta---GTTA-TTCTGTATCTGGAAACATTAACTATTAAATACAAGAGAGGTAAGTACCAACAGTGGTAAAATCACCC-----AAACTGATTAAGTTATACAACTGTATGTGGTCATTATAAGTACATAC
i macNem1.NW_012011945v1    C 0 I 22
s cerAty1.NW_012002657v1        99007 330 -   1987038 aaaacccatgaactgtaca--ttaa--aggttaactttagggtaggtagat----tttatgtcaatacagctgttttaaaaaatttt-cattctgccatttactggctgtgtgatgtca---cagttacttaacctct--atgcctcagtttccccacttgctaaatggaaaaagga----tacAAACTTTTTGATGACATATATAAAGCATTTTGCA-------TGGCATACAGTA---GTTA-TTTTGTATCTGGAAACATTAACTATTAAATACAAGAGAGGTAAGTACCAACAGTGGTAAAACCACCC-----AAACTGATTAAGTTATACAACTGTATGTGGTCATTATAAGTACATAC
i cerAty1.NW_012002657v1    C 0 I 22
s chlSab2.chr29              21180521 330 -  24206276 aaaacccatgaactgtaca--ttaa--aggttaactttagggtaggtagat----tttatgtcaatacagctgttttaaaaaatttt-cattctgccatttactggctgtgtgatgtca---cagttacttaacctct--atgcctcagtttccccacttgttaaatggaaaaagga----tacAAACTTTTTGATGACATATGTAAAGCATTTTGCA-------TGGCATACAGTA---GTTA-TTTTGTATCTGGAAACATTAACTATTAAATACAAGAGAGGTAAGTACCAACAGTGGTAAAACCACCC-----AAACTGATTAAGTTATACAACTGTATGTGGTCATTATAAGTACATAC
i chlSab2.chr29             C 0 I 2
s manLeu1.NW_012106908v1       122302 330 -   1397330 aaaacccatgaactgtaca--ttaa--aggttaactttagggtaggtagat----tttatgtcaatacagctgttctaaaaaatttt-cattctgccatttactggctgtgtgatgtca---cagttacttaacctct--atgcctcagtttccccacttgttaaatggaaaaagga----tacaaactttttgatgacatatgtaaaacattttgca-------tggtatacagta---GTTA-TTTTGTATCTGGAAACATTAACTATTAAATACAAGAGAGGTAAGTACCAACAGTGGTAAAACCACCC-----AAACTGATTAAGTTATACAACTGTATGTGGTCATTATAAGTACATAC
i manLeu1.NW_012106908v1    C 0 I 22
s colAng1.NW_012117110v1       120356 330 -   1784207 aaaaccaatgaactgtaca--ttaa--aggttaactttagggtaggtagat----tttatgtcaatacagctgtttaaaaaaatttt-cattctgccatttactggctgtgtgatgtca---cagttacttaacctct--atgcctcagtttccccacttgttaaacggaaaaagga----tacaaactttttgatgacatatgtaaagcattttgca-------tggcatacagta---GTTA-TTTTGTATCTGGAAACATTAACTATTAAATACAAGAGAGGTAAGTACCAACAGTGGTAAAACCACCC-----AAACTGATTAAGTTATACAACTGTATGTAGTCATTATAAGTACATAC
i colAng1.NW_012117110v1    C 0 I 22
s calJac3.chr6               22327126 243 + 158406734 ATACTCAATGAATTGTACA--TTAA--AGGTGAACTTTAGGTTATGTAAATTTTATTTATGTCAATACAGCTATTT--AAAaatttt-ttttctgctgtttactggctgtgtgatgtca---tagttacttaacctcc--a--------------------------------------------------------------------------------------------------tgctatttttgtatctgaaaaCATTAATTATTAAATAG-----TGGTAAGTACCAAGAGTGGCAAAG-CACCC-----AAACTGATTAAGTTATACAATTCCATGTGGTCACTGTAAGAACATAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50554324 324 +  54856640 atactcaatgaattgtaca--ttaa--aggtgaactttagggtatgtaaattttatttatgtcaatacagctgttT--AAAATTTTTCTTTtctgctgtttactggctgtgtgatatca---tagttacttaacctcc--atgcctcagttttcccatttatgaaaAAGTTAA-----------CAACTTTTTGATGACATATGTAAAGCATTTTGCA-------TGGCATACAGTAGTTGCTATTTTTGTATCTGAAAACATTAATTATTAAATAC-----TGGTAAGTACCAAGAGTGGCAAAG-CACCC-----AAACTGATTAAGTTATACAATTCTATGTGATCACTGCAAGGACATAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       705025 322 -   2910086 atactcaatgaattgtaca--ttaa--aggtgaactttagggtatgtaaattttatttatgtcaatacagctgttT--AAAATTTT--TTTtctgctgtttactggctgtgtgatgtcg---tagttacttaacctcc--atgcctcagttttcccatttatgaaatggaaaa-----------aaactttttgatgacatatgtaaagcattttgCA-------TGGCATACAGTAGCTGCTATTTTTGTATCTGAAAACATTAATTATTAAATAC-----TGGTAAGTACCAAGAATGGCAAAG-CACCC-----AAATTGATTAAGTTATAGAATTCTATGTGGTCATTGCAAGGACATAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40726019 330 +  42888418 atacccaatgaattgtaca--ttaa--aggtgaactttagggtatgtcaattttatttatgtcaatacagctgttT--AAAATTGTT-TTTtctgctgtttactggctgtgtgatgtca---tagttaattaacttcc--atgcctcagttttcccatgtatgaaatggaaaaaaga----taccaactttttgatgacatatgtaaagcattttgca-------tggcatacagtagctgctATTTTTGTATCTGAAAACATTAATTATTAAATAC-----TGGTAAGTACCAAGAGTGGCAAAG-CACCC-----AAACTGATTAAGTTATACAATTCTATGTGGTCATTGTAAGGACATAC
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1933252 354 +   3943991 aaaatcattcaattgtataccttaagcaggtaaac-ttatgatatgtacat----tatacctcaataaagttttta--aaaaatctt-gattctgccatttattggctgtatgatgccagacaagttactgaacctctcggcacctcactttaccaatttataaaaagggaaaaggagaactaccaatcttttaataacatgtataaagaacttagcataatacctggcatgtggtagctgctATTTTAACATCTGAAGATG-TAATTATAAGAGAGCATA-TGGTAAGCACCAAGAGTGGTAAGAACACCCAAGAGAAACTAGCTAAGTTGTACAACTCTACGTGGTCACTAAAAGTACACAC
i dasNov3.JH570731          I 1306 C 0
e mm10.chr7                  81436532 678 + 145441459 I
e canFam3.chr3               54481048   0 +  91889043 C
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=11438.000000
s hg38.chr15_KI270850v1_alt    418495 3 +    430880 AAC
s panTro5.chr15              63570948 3 +  83230942 AAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80527878 3 +  99763055 AAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       128067 3 -   1709092 AAC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17290122 3 - 121039945 AAC
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108490776 3 - 171882078 AAT
i macFas5.chr7              I 13 I 6
s chlSab2.chr29              21180853 3 -  24206276 ATT
i chlSab2.chr29             I 2 I 17
s calJac3.chr6               22327369 3 + 158406734 AAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50554648 3 +  54856640 AAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       705347 3 -   2910086 AAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40726349 3 +  42888418 AAC
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1933606 3 +   3943991 AAG
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81436532 678 + 145441459 I
e canFam3.chr3               54481048 0 +  91889043 C
e otoGar3.GL873530             718910 1898 -  36342412 I
e colAng1.NW_012117110v1       120686 22 -   1784207 I
e manLeu1.NW_012106908v1       122632 22 -   1397330 I
e cerAty1.NW_012002657v1        99337 22 -   1987038 I
e macNem1.NW_012011945v1       107268 22 -   2311642 I
e rheMac8.chr7               60964021 22 + 169600520 I

a score=503520.000000
s hg38.chr15_KI270850v1_alt    418498 55 +    430880 TTTATTAACTGGCATGAGAAG------------------------------ATGGGTAAGACA----TTACCGAATGAAAAAAGA-----ACTC
s panTro5.chr15              63570951 55 +  83230942 TTTATTAACTGGCATGAGAAG------------------------------ATGGGTAAGACA----TTACCGAATGAAAAAAGA-----ACTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80527881 55 +  99763055 TTTATTAACTGGCATGAGAAG------------------------------ATGGGTAAGACA----TTACCGAATGAAAAAAGA-----ACTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       128070 55 -   1709092 TTTATTAACTGGCATGAGAAG------------------------------ATGGGTAAGACA----TTACCGAATGAAAAAAGA-----ACTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17290125 55 - 121039945 TTTATTAACTGGCATGAGAAG------------------------------ATGGGTAAGACA----TTAGTGAATGAAAAAAGA-----ACTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60964043 59 + 169600520 TTTATTAACTGGCATGAGAAA------------------------------ATGGGCAAGACATTACTTACTGAATGAAAAAAGA-----AATC
i rheMac8.chr7              I 22 C 0
s macFas5.chr7              108490785 59 - 171882078 TTTATTAACTGGCATGAGAAA------------------------------ATGGGCAAGACATTACTTACTGAATGAAAAAAGA-----AATC
i macFas5.chr7              I 6 C 0
s macNem1.NW_012011945v1       107290 59 -   2311642 TTTATTAACTGGCATGAGAAA------------------------------ATGGGCAAGACATTACTTACTGAATGAAAAAAGA-----AATC
i macNem1.NW_012011945v1    I 22 C 0
s cerAty1.NW_012002657v1        99359 59 -   1987038 TTTATTAACTGACATGAGAAA------------------------------ATGGGCAAGACACTACTTACTGAATGAAAAAAGA-----AATC
i cerAty1.NW_012002657v1    I 22 C 0
s chlSab2.chr29              21180873 59 -  24206276 TTTATTAACTGGCATGAGAAA------------------------------ATGGGCAAGACATTACTTACTGAATGAAAAAAGA-----AATC
i chlSab2.chr29             I 17 C 0
s manLeu1.NW_012106908v1       122654 59 -   1397330 TTTATTAACTGGCATGAGAAA------------------------------ATGGGCAAGACATTACTTATTGAATGAAAAAAGA-----AATC
i manLeu1.NW_012106908v1    I 22 C 0
s colAng1.NW_012117110v1       120708 59 -   1784207 TTTATTAACTGGCATGAGAAA------------------------------ATGGGCAAGACATTACTTACTGAATGAAAAAAGA-----AATC
i colAng1.NW_012117110v1    I 22 C 0
s calJac3.chr6               22327372 58 + 158406734 --TGTTAACTGGCATGATAAG------------------------------ACGGATAAGCCA----TTAATGAATGAAAAAAAATTCTCTCTc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50554651 52 +  54856640 TTTGTTAACTGGC---ATAAG------------------------------ATGGATAAGCCA----TTAATGAATGAAAAAAAA-----CCTc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       705350 55 -   2910086 TTTGTTAACTGGCATGATAAG------------------------------ATGGATAAGCCA----TTAATGAATGAAAAAAGA-----ACTC
i cebCap1.NW_016107610v1    C 0 I 651
s aotNan1.NW_018505940v1     40726352 85 +  42888418 TTTGTTAACTGGCATGATAAGATGATGCCATTATCTTATGCCATTATCTTAATGGATAAGCCA----TTAATGAATGAAAAAAGA-----ACTC
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1933609 55 +   3943991 TCTATTTACTAGCATGAGACG------------------------------ATGTGTAAGACA----TTACCCAATGAAAAGAGA-----ACTC
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81436532 678 + 145441459 I
e canFam3.chr3               54481048  0 +  91889043 C
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=106744.000000
s hg38.chr15_KI270850v1_alt    418553 15 +    430880 CTATATATATATATA
s panTro5.chr15              63571006 15 +  83230942 CTATATATATATATA
i panTro5.chr15             C 0 I 2
s panPan2.chr15              80527936 15 +  99763055 CTATATATATATATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       128125 15 -   1709092 CTATATATATATATA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17290180 15 - 121039945 CTATATATACATATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60964102 15 + 169600520 CTATATATACATATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108490844 15 - 171882078 CTATATATACATATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       107349 15 -   2311642 CTATATATACATATA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        99418 15 -   1987038 CTATATATACATATA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21180932 15 -  24206276 CTATATATACATATA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       122713 15 -   1397330 CTATATATACATATA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       120767 15 -   1784207 CTATATATACATATA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22327430 13 + 158406734 --atacacacacaca
i calJac3.chr6              C 0 I 28
s saiBol1.JH378108           50554703 13 +  54856640 --atacacacacaca
i saiBol1.JH378108          C 0 I 949
s aotNan1.NW_018505940v1     40726437 13 +  42888418 --ATacacacacaca
i aotNan1.NW_018505940v1    C 0 I 42
s dasNov3.JH570731            1933664 14 +   3943991 CTAGAAATGTAATC-
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81436532 678 + 145441459 I
e canFam3.chr3               54481048  0 +  91889043 C
e cebCap1.NW_016107610v1       705405 651 -   2910086 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=242298.000000
s hg38.chr15_KI270850v1_alt    418568 30 +    430880 AAAAATCATGAACCCTTACACAaaaactat
s panTro5.chr15              63571023 30 +  83230942 AAAAATCATGAACCCTTACACAaaaactat
i panTro5.chr15             I 2 C 0
s panPan2.chr15              80527951 30 +  99763055 AAAAATCATGAACCCTTACACAAAAACTAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       128140 29 -   1709092 AAAAA-CATGAACCCTTACACAAAAACTAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17290195 30 - 121039945 TAAAATCATGAACCCTTACACcaaaactat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60964117 30 + 169600520 TAAAATCATGAACCCTTACACAAAAACTAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108490859 30 - 171882078 TAAAATCATGAACCCTTACACAAAAACTAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       107364 30 -   2311642 TAAAATCATGAACCCTTACACAaaaactat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        99433 30 -   1987038 TAAAATCATGAACCCTTACACAaaaactat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21180947 30 -  24206276 TAAAATCATGAAcccttaaacaaaaactat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       122728 30 -   1397330 TAAAATCATGAACCCTTACACAaaaactat
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       120782 30 -   1784207 TAAAATCATGAATCCTTACACAaaaactat
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22327471 30 + 158406734 AAAAATCAGGAACCCTTACACAaaaactat
i calJac3.chr6              I 28 C 0
s aotNan1.NW_018505940v1     40726492 30 +  42888418 AAAAATCATGAACCCTTACACAaaaactat
i aotNan1.NW_018505940v1    I 42 C 0
s dasNov3.JH570731            1933678 28 +   3943991 ATGAAT--TGAACCTCTACACAAAAgcttt
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81436532 678 + 145441459 I
e canFam3.chr3               54481048  0 +  91889043 C
e cebCap1.NW_016107610v1       705405 651 -   2910086 I
e otoGar3.GL873530             718910 1898 -  36342412 I
e saiBol1.JH378108           50554716 949 +  54856640 I

a score=1151373.000000
s hg38.chr15_KI270850v1_alt    418598 135 +    430880 tcttttggtattccctatctcggtaaataacaccac--catccaccagatgcccaaagcagaaatgtaggtaccattcttca--ctccggtctccctcactctccacagccaatGCCCAACATAAGAAGCAATGAAATA
s panTro5.chr15              63571053 135 +  83230942 tcttttggtattccctatctcggtaaataacactac--catccaccagatgcccaaagcagaaacgtaggtaccattcttca--ctccagtctccctcactctccacagccaatGCCCAACATAAGAAGCAATGAAATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80527981 135 +  99763055 TCTTTTGgtattccctatctcggtaaataacactac--catccaccagatgcccaaagcagaaatgtaggtaccattcttca--ctccggtctccctcactctccacagccaatGCCCAACATAAGAAGCAATGAAATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       128169 135 -   1709092 TCTTTTGgtattccctaactcggtaaataacactac--catccaccagatgcccaaagcagaaatgtaggtaccattcttca--ctccggtctccctcactctccacagccaatGCCCAACATAAGAAGCCATGAAATA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17290225 135 - 121039945 tcttttggtattccctatcttggtaaataacactac--catccaccagatgcccaaagcagaaatgtaggtaccattcttca--ctccagtctccctcactctccatagccaatGCCCAACATAAGAAGCAACGAAATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60964147 130 + 169600520 TCTTTTGgtattccctatctcagtaaataatactac--catccaccagatgcccaatgcagaaatgtaggtaccattcttca-------gtctccctcactctccacagtcaatGCCCAAAATAAGATGCAATGAAATA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108490889 130 - 171882078 TCTTTTGgtattccctatctcagtaaataacactac--catccaccagatgcccaatgcagaaatgtaggtaccattcttca-------gtctccctcactctccacagtcaatGCCCAAAATAAGATGCAATGAAATA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       107394 130 -   2311642 tcttttggtattccctatctcagtaaataacactac--catccaccagatgcccaatgcagaaatgtaggtaccattcttca-------gtctccctcactctccacagtcaatGCCCAAAATAAGATGCAATGAAATA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        99463 130 -   1987038 tcttttggtattccctatctcagtaaataacactac--catccaccagatgcccaatgcagaaatgtaggtactattcttca-------gtctccctcactctccacagtcaatGCCCAACATAAGAAGCAATGAAATA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21180977 130 -  24206276 tcttttggtattccctatctcagtaaataacactac--catccaccagatgcccaatgcagaaatgtaggtaccattcttca-------gtctccctcactccccacagtcaatGCCCAACATAAGAAGCAATGAAATA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       122758 130 -   1397330 tcttttggtattccctatctcagtaaataacactac--catccaccagatgcccaatgcagaaatgcaggtactattcttca-------gtctccctcactctccacagtcaatGCCCAACATAAGAAGCAATGAAATA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       120812 130 -   1784207 tcttttggtattccctatctcagtaaataacactat--catccaccagatgcccaatgcagaaatgtaggcaccattcttca-------gtctccctcactctccacagtcaatGCCCAACATAAGAAGCAATGAAATA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22327501 131 + 158406734 tcttttggtgttctctatcttggtaaataaaactac--catccacccaatgcccaaagcagaaatgcaagtatcattcttca--ctctagtctccctcactcttcacatccaatgtccaac----taagcaaTGAAACA
i calJac3.chr6              C 0 I 305
s aotNan1.NW_018505940v1     40726522 131 +  42888418 tcttctggtgttccttatcttggtaaataacactac--catccacccgatgcccaaagcagaaatgtaggtaccattcttca--ctctagtctccctcacgctctacatccaatgcccaac----taagcaaTGAAATA
i aotNan1.NW_018505940v1    C 0 I 1
s canFam3.chr3               54481048 123 +  91889043 tcccttggtattctgtagctcagcagacaacactac--ca-------gttgtctctgacagaaatcttggtaccattcttca-------ttctttctcactcatcacatccaatGCCTGACATAGTAAGCAATGAAATA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1933706 139 +   3943991 tcttctggtgttctctctctcagtaaataacattacatcattcaccatgtgcccaaggcagaaatctagatcctatctttcattcttcaatctccctcactctgcacatccaaatccTAAAAGGTCAAGCCATGAAATA
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81436532 678 + 145441459 I
e cebCap1.NW_016107610v1       705405 651 -   2910086 I
e otoGar3.GL873530             718910 1898 -  36342412 I
e saiBol1.JH378108           50554716 949 +  54856640 I

a score=6695.000000
s hg38.chr15_KI270850v1_alt    418733 1 +    430880 T
s panTro5.chr15              63571188 1 +  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80528116 1 +  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       128304 1 -   1709092 T
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17290360 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60964277 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108491019 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       107524 1 -   2311642 T
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        99593 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21181107 1 -  24206276 T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       122888 1 -   1397330 T
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       120942 1 -   1784207 T
i colAng1.NW_012117110v1    C 0 C 0
s canFam3.chr3               54481171 1 +  91889043 C
i canFam3.chr3              C 0 I 3
s dasNov3.JH570731            1933845 1 +   3943991 T
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40726653 1 +  42888418 I
e mm10.chr7                  81436532 678 + 145441459 I
e calJac3.chr6               22327632 305 + 158406734 I
e cebCap1.NW_016107610v1       705405 651 -   2910086 I
e otoGar3.GL873530             718910 1898 -  36342412 I
e saiBol1.JH378108           50554716 949 +  54856640 I

a score=41886.000000
s hg38.chr15_KI270850v1_alt    418734 5 +    430880 TGGTT
s panTro5.chr15              63571189 5 +  83230942 TGGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80528117 5 +  99763055 TGGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       128305 5 -   1709092 TGGTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17290361 5 - 121039945 TGGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60964278 5 + 169600520 TGGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108491020 5 - 171882078 TGGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       107525 5 -   2311642 TGGTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        99594 5 -   1987038 TGGTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21181108 5 -  24206276 TGGTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       122889 5 -   1397330 TGGTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       120943 5 -   1784207 TGGTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22327937 5 + 158406734 tggcc
i calJac3.chr6              I 305 C 0
s saiBol1.JH378108           50555665 5 +  54856640 tggcc
i saiBol1.JH378108          I 949 C 0
s aotNan1.NW_018505940v1     40726654 5 +  42888418 TGGTT
i aotNan1.NW_018505940v1    I 1 C 0
s canFam3.chr3               54481175 2 +  91889043 CG---
i canFam3.chr3              I 3 C 0
s dasNov3.JH570731            1933846 5 +   3943991 TGGCT
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81436532 678 + 145441459 I
e cebCap1.NW_016107610v1       705405 651 -   2910086 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=11099.000000
s hg38.chr15_KI270850v1_alt    418739 1 +    430880 G
s panTro5.chr15              63571194 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80528122 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       128310 1 -   1709092 G
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17290366 1 - 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60964283 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108491025 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       107530 1 -   2311642 G
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        99599 1 -   1987038 G
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21181113 1 -  24206276 G
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       122894 1 -   1397330 G
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       120948 1 -   1784207 G
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22327942 1 + 158406734 A
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50555670 1 +  54856640 A
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40726659 1 +  42888418 G
i aotNan1.NW_018505940v1    C 0 I 315
s mm10.chr7                  81437210 1 + 145441459 G
i mm10.chr7                 I 678 C 0
s canFam3.chr3               54481177 1 +  91889043 G
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1933851 1 +   3943991 G
i dasNov3.JH570731          C 0 C 0
e cebCap1.NW_016107610v1       705405 651 -   2910086 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=1914443.000000
s hg38.chr15_KI270850v1_alt    418740 183 +    430880 ACAGATTGAGTTTTTTAAGGGG--AGCCTGCCTCATC----AGTTCTATTATCCTCAATTATCTTGCG-GA----AAAC-AAAAACAGACCAAGTAATGAA-ACTGGCACTTAATATCTCATAAGCTGGTCACATCAAAACAAAACAAGAAGA--GGCCCAATGTCATTTTGTTTGGCCT-ACTAAAATCCAAGTGAGC
s panTro5.chr15              63571195 183 +  83230942 ACAGATTGAGTTTTTTAAGGGG--AGCCTGCCTCATC----AGTTCTATTATCCTCAATTATCTTGCG-GA----AAAC-AAAAACAGACCAAGTAAGGAA-ACTGGCACTTAATATCTCATAAGCTGGTCACATCAAAACAAAACAAGAAGA--GGCCCGATGTCATTTTGTTtggcct-actaaaatccaagtgagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80528123 183 +  99763055 ACAGATTGAGTTTTTTAAGGGG--AGCCTGCCTCATC----AGTTCTATTATCCTCAATTATCTTGCG-GA----AAAC-AAAAACAGACCAAGTAAGGAA-ACTGGCACTTAATATCTCATAAGCTGGTCACATCAAAACAAAACAAGAAGA--GGCCCGATGTCATTTTGTTTGGCCT-ACTAAAATCCAAGTGAGC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       128311 183 -   1709092 ACAGACTGAGTTTTTTAAGGGG--AGCCTGCCTCATC----AGTTCTATTATCCTCAATTATCTTGGG-GA----AAAC-AAAAACAGACCAAGTAAGGAA-ACTGGCACTTAATACCTCATAAGCTGGTCACATCAAAACAAAACAAGAAGA--GGCCCAATGTCATTTTGTTTGGCCT-ACTAAAATCCAAGTGAGC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17290367 187 - 121039945 ACAGATTGAGTTTTTTAAGGGG--AGCCTGCCTCATC----AGTTCTATTATCCTCAATTATCTTGGG-GAAAACAAAC-AAAAACAGACCAAGTAAGGAA-ACTGGCACTTAATATCTCATAAGCTGGTCACGTCAAAACAAAACAAGAAGA--GGCCTGTTGTCATTTTGTTTGGCCT-ACTAAAATCCAAGTAAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60964284 176 + 169600520 ACAGAT----TTTTTTAAGAGG--AGCCTACCTCATC----AGTTCTATTATCCTCAATTATCTTGGG-GA----AAAC-AAAAACAGAACAAGTAACGAA-ACTGGCACTTAACAT---ATAAGCTGGTCACATCAAAACAAAACAAGAACA--GGCCTGATGTCACTTTGTTTGGCCT-ACTGAAATCCAAGTAAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108491026 176 - 171882078 ACAGAT----TTTTTTAAGAGG--AGCCTGCCTCATC----AGTTCTATTATCCTCAATTATCTTGGG-GA----AAAC-AAAAACAGAACAAGTAACGAA-ACTGGCACTTAACAT---ATAAGCTGGTCACATCAAAACAAAACAAGAACA--GGCCTGATGTCACTTTGTTTGGCCT-ACTGAAATCCAAGTAAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       107531 176 -   2311642 ACGGAT----TTTTTTAAGAGG--AGCCTGCCTCATC----AGTTCTATTATCCTCAATTATCTTGGG-GA----AAAC-AAAAACAGAACAAGTAACGAA-ACTGGCACTTAACAT---ATAAGCTGGTCACATCAAAACAAAACAAGAACA--GGCCTGATGTCACTTTGTTTGGCCT-ACTGAAATCCAAGTAAGC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        99600 176 -   1987038 ACATAT----CTTTTTAAGAGG--AGCCTGCCTCATC----AGTTCTATTATCCTCAATTATCTTGGG-GA----AAAC-AAAAATAGAACAAGTAATGAA-ACTGGCACTTAATAT---ATAAGCTGGTCACATCAAAACAAAACAAGAACA--GGCCTGATGTCACTTTGTTTGGCCT-ACTGAAATCCAAGTAAGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21181114 180 -  24206276 ACAGAT----TTTTTTAAGAGG--AGCCTGCCTCATC----AGTTCTATTATCCTCAATTATCTTGGG-GAAAACAAAC-AAAAACAGAACAAGTAACGAA-ACTGGCACTTAATAT---ATAAGCTGGTCACATCAAAACAAAACAAGAACA--GGCCTGATGTCACTTTGTTTGGCCT-ACTAAAATCCAAGTAAGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       122895 180 -   1397330 ACAGAT----TTTTTTAAGAGG--AGCCTGCCTCATC----AGTTCTATTATCCTCAATTATCTTGGG-GAAAACAAAC-AAAAACAGAACAAGTAACGAA-ACTGGCACTTAATAT---ATAAGCTGGTCACATCAAAACAAAACAAGAACA--GGCCTGATGTCACTTTGTTTGGCCT-ACTGAAATCCAAGTAAGC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       120949 171 -   1784207 ACAGAT----TTTTTTAAGAGG--AGCCTGCCTCATC----AGTTCTATTACCCTCAATTATCTTGGG-GA----AAAC-AAAAACAGAACAAGTAACGAA-ACTGGCACTTAATAT---ATAAGCTGGTCACAC-----CAAAACAAGAACA--GGCCTGATGTCACTTTGTTTGGCCT-ACTAAAATCCAAGTAAGC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22327943 187 + 158406734 ACAGGTTAAGTCTTTTAAGAGG--AGCCTGCCTCATC----AGTTCTATCATCCTCAATTATCTTGGG-GAAAACAAAC-AAAAACAGACCAAGTAAAAAA-ATTGGCACTTAATATCTCACAAGCTGTTCACATCACAACAAAACAAGAACA--AGCCTGGTGTCACTTTGTTTAGCCT-ACTAAAATCCAAGTAAGC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50555671 183 +  54856640 ACAG----AGTCTTTTAAGAGG--AGCCTGCCTCATC----AGTTCTATCAGCCTCAATTATCTTGGG-GAAAACATAA-AAAAACACACTAAGTAAAAAA-ACTGGCACTTAATATCTCATAAGCTGTTCACATCAAAACAAAACAAGAACA--GGCCTGATGTTGGTTTGTTTAGCCT-ACTAAAATCCAAGTAAGC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       706056 187 -   2910086 ACAGATTGAGTCTTTTAAGAGG--AGCCTGCCTCATC----AGTTCTATCATCCTCAATTATCTTGGG-GAAAACAAAC-AAAAACACACCAAGTAAAAAA-ACTGGCACTTAATATCTCATAAGCTGTTCACATCAAAACAAAACAAGAACA--GGCCTGATGTCGCTTTGTTTAGCCA-ACCAAAATCCAAGTAAGC
i cebCap1.NW_016107610v1    I 651 C 0
s aotNan1.NW_018505940v1     40726975 187 +  42888418 ACAGATTGAGTCTTTTAAGAGG--AGCCTGCCTCATC----AATTCTATCATCCTCAATTACCTTTGG-GAAAACAAAC-AAAAACAGACCAAGTAAAAAA-ACTGGCACTTAATATCTCATAAGCTGTTCACATCAAAACAAAACAAGAACA--GGCCTGATGTCACTTTGTTTAGCCT-ACTAAAATCCAAGTAAGC
i aotNan1.NW_018505940v1    I 315 C 0
s mm10.chr7                  81437211 166 + 145441459 ACAGACTTAGCTTTCTAAGAAGAAAATCAGCATAAGA----AGTGCAATCATTTTAAAATAACTTGGG-AA-------------TCAGTACAAGTATGGAAGACTGGAAC-TAACTT---ATAACTTCATT-CATCAAAACAGAATA---------GCACAGTGTTACTTTGTCTAGCCT-ATTGTAATCCAGGTGATC
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54481178 178 +  91889043 ACAGTC----ATTTTTAAGTAA--AGTCTAATTAATC---AAGCTCTAGGATTCCCAATTACCTTGGG-GA----AAACAAAAAACAGATGAAGTAAGGAA-ACTAGAACCTAGGATCAGAC-AGCTGGTCACTTCAAAATAAAATTTTAAAA--AGCTGAGTG--ACTATGTTTAGCCT-ATTGAAATTCAGGTAAGC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1933852 174 +   3943991 ACAGAC----TTTTCTAAGGGG--AATATGCCTCACCTTCACTTTCTATTATTC-CAATTATCCTGGGAGA----AAAC-A----------AAGTAGGGAA-GCT-TTACCTAAGATCTTACAA-CTGGTCAATTCAGGACAAAGAAAAAAAAATGCCTTGGTGTCACTTGGTTTAACCTAATTAAAATGTGGGTGAGC
i dasNov3.JH570731          C 0 I 56
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=3403954.000000
s hg38.chr15_KI270850v1_alt    418923 323 +    430880 ATGAGAATGACCAAGAGCATTTACAGTTTTACCAACTCTGCAGGATGACCTTAAAGGGACAAACTTGAGCCTCACGTCAGCCTCAAGTTCTTG--AAGATTGGT---ACCCTCTGCAAACTGTGAAGACGACCAAAATACACAATCCTACAAGGTTGTTTTCCCAAGCTCTCTAGAGTGGTGCCATTGAGAACTGTTAAATCCAGTGACACACAAGGCCCTTTTCACAACTGTAGATTTCT--AAGCTGATTCTCAATTTCAGGAAGGCAACTTCATGAAGGCTAAGATGCAAAGATTTA----TAACCTGCagagaggaggtctcgctgtgtt
s panTro5.chr15              63571378 326 +  83230942 atgagaatgaccaagagcatttacagttttaccaactctgcaggatgaccttaaagggacaaacttgagcctcacgtcagCCTCAAGTTCTTG--AAGACTGGTGGTACCCTCTGCAAACTGTGAAGAAGACCAAAATACACAATCCTACAAGGTTGTTTTCCCAAGCTCTCTAGAGTGGTGCCATTGAGAACTGTTAAATCCAGTGACACACAAGGCCCTTTTCACAACTGTAGATTTCT--AAGCCGATTCTCAATTTCAGGAAGGCAACTTCATGAAGGCTAAGATGCAAAGATTTA----TAACCTGCagagaggaggtctcgctgtatt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80528306 326 +  99763055 ATGAGAATGACCAAGAGCATTTACAGTTTTACCAACTCTGCAGGATGACCTTAAAGGGACAAACTTGAGCCTCACGTCAGCCTCAAGTTCTTG--AAGACTGGTGGTACCCTCTGCAAACTGTGAAGAAGACCAAAATACACAATCCTACAAGGTTGTTTTCCCAAGCTCTCTAGAGTGGTGCCATTGAGAACTGTTAAATCCAGTGACACACAAGGCCCTTTTCACAACTGTAGATTTCT--AAGCTGATTCTCAATTTCAGGAAGGCAACTTCATGAAGGCTAAGATGCAAAGATTTA----TAACCTGCagagaggaggtctcgctgtatt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       128494 311 -   1709092 ATGAGAATGACCAAGAGCATTTACAGTTTTATCAACTCTGCAGGATGACCTTAAAGGGACAAACTTGAGCCTCAC-----------GTTCTTG--AAGACTGGT---ACCCTCTGCAAACTGTGAAGACGACCAAAATACACAATCCTACAAGGTTGTTTTTCCAA-TTCTCTAGAGTGGTGCCATTGAGAACTGTTAAATCCAGTGACACACAAGGCCCTTTTCACAACTGTAGATTTCT--AAGCTGATTCTCAATTTCAGGAAGTCAACTTCATGAAGGCTAAGATGCAAAGATTTA----TAACCTGCagagaggaggtctcgctgtgtt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17290554 325 - 121039945 ATGAGAATGACCAAGAGCATTTACAGTTTTATCAACTCTGCAGGATGACCTTAAAAGGACAAACTTGAGCCTCACATCAGCCTCAAGTTCTTGAAAAGACTGGT---ACCCTCTGCAAACTGTGAAGACGACCAAAATACACAATCCTGCAAGGTTGTTTTCCCAAGCTCTCTAGAGTGGTGCCATTGAGAACTGTTAAATCCAGTGACACACAAGGCCCTTTTCACAGCTGTAGATTTCT--AATCTGATTCTCAATTTCAGGAAGGCAACTTCATGAAAGCTAGGATGCAAATATTTA----TAACCTGCagagaggaggtctcgctgtgtt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60964460 319 + 169600520 ATGAGAATGACCAAGAGCATTTACAGTTTTATCAACTCTGCAGGATGACCTTAAAGGGACAAACTTGAGCCTCACATCAGCCTCCAATTCTTGAAAGGACTGGT---ACCCTCTGCAAACTGTGAA---GACCGAAATACACAATCCTGC-AGGTTGTTTTCCCAAA--CTCTAGAGTGGTGCCATTGAGAACTGTTAAATCCAGTGACACACAAGGCCCTTTTCACAACTGTAGATTTCT--AAGACGATTCTCAATTTCAGGAAGGCAACTTCATGAAGACTAAGATGCAAATACTTA----CAATCTACagagaggaggtctcgctgtgtt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108491202 319 - 171882078 ATGAGAATGACCAAGAGCATTTACAGTTTTATCAACTCTGCAGGATGACCTTAAAGGGACAAACTTGAGCCTCACATCAGCCTCCAATTCTTGAAAGGACTGGT---ACCCTCTGCAAACTGTGAA---GACCGAAATACACAATCCTGC-AGGTTGTTTTCCCAAA--CTCTAGAGTGGTGCCATTGAGAACTGTTAAATCCAGTGACACACAAGGCCCTTTTCACAACTGTAGATTTCT--AAGATGATTCTCAATTTCAGGAAGGCAACTTCATGAAGACTAAGATGCAAATACTTA----TAATCTACagagaggaggtcttgctgtgtt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       107707 319 -   2311642 ATGAGAATGACCAAGAGCATTTACAGTTTTATCAACTCTGCAGGATGACCTTAAAGGGACAAACTTGAGCCTCGCATCAGCCTCCAATTCTTGAAAGGACTGGT---ACCCTCTGCAAACTGTGAA---GACCGAAATACACTATCCTGC-AGGTTGTTTTCCCAAA--CTCTAGAGTGGTGCCATTGAGAACTATTAAATCCAGTGACACACAAGGCCCTTTTTACAACTGTAGATTTCT--AAGACGATTCTCAATTTCAGGAAGGCAACTTCATGAAGACTAAGATGCAAATACTTA----TAATCTACagagaggaggtctcgctgtgtt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1        99776 319 -   1987038 ATGAGAATGACCAAGAGCATTTACAGTTTTATCAACTCTGCAGGATGACCTTAAAGGGACAAACTTGAGCCTCACATCAGCCTCCAATTATTGAAAGGACTGGT---ACCCTCTGCAAACTGTGAA---GACCAAAATACACAATCCTGC-AGGTTGTTTCCCCAAA--CTCTAGAGTGGTGCCATTGAGAACTGTTAAATCCAGTGACACACAAGGCCCTTTTCACAACTGTAGATTTCT--AAGACGATTCCCAATTTCAGGAAGGCAACTTCATGAAGACTAAGATGCAAATACTTA----TAATCTACagagaggaggtctcactgtgtt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21181294 318 -  24206276 ATGAGAATGACCAAGAGCATTTACAGTTTTATCAACTCTGCAGGATGACCTTAAAGGGACAAACTTGAGCCTCACATCAGCCTCAAATTCTTGAAAGGACTGGT---ACCCTCTGCAAACTGTGAA---GACCAAAATACACAATCCTGC-AGGTTGTTTTCCCAAA--CTCTAGAGTGGTGCCATTGAGAACTGTTAAATCCAGTGACACAC-AGGCCCTTTTCACAACTGTAGATTTCT--AAGACGATTCTCAATTTCAGGAAGGCAACTTCATGAAGACTAAGATGCAAATACTTA----TAATCTGCagagaggaggtctcgctgtgtt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       123075 319 -   1397330 ATGAGAATGACCAAGAGCATTTACAGTTTTATCAACTCTGCAGGATGACCTTAAAGGGACAAACTTGAGCCTCACATCAGCCTCCAATTCTTGAAAGGACTGGT---ACCCTCTGCAAACTGTGAA---GACCAAAATACACAATCCTGC-AGGTTGTTTCCCCAAA--CTCTAGAGTGGTGCCATTGAGAACTGTTAAATCCAGTGACACACAAGGCCCTTTTCACAACTGTAGATTTCT--AAGACGATTCTCAATTTCAGGAAGGCAACTTCATGAAGACTAAGATGCAAATACTTA----TAATCTACagagaggaggtctcgctgtgtt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       121120 321 -   1784207 ATGAGAATGACCAAGAGCATTTACAGTTTTATCAACTCTGCAGGACGACCTTAAAGGGACAAACTTGAGCCTCACATTAGCCTCAAATTCTTGAAAAGACTGGT---ACCCTCTGCAAACTGTGAA---GACCAAAACACACAATCCTGC-AGGCTGTTTTCCCAAACTCTCTAGAGTGGTGCCATTGAGAACTGTTAAATCCAATGACACACAAGGCCCTTTTCACAACTGTAGATTTCT--AAGATGATTCTCAATTTCAGGAAGGCAACTTCATGAAGGCTAAGATGCAAATACTTA----TAATCTGCagagaggaggtctcgctgtgtt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22328130 325 + 158406734 ATGAGAATGATCAGAAGCATTTACAGTTTTACCAACTCTGCAAGATGACCTTAAAGGGACAAACTTGAGCCTCATATCAGCCTCAAGTTCTTCAAAAGACTGGT---ATCCTTTGCAAACTGTTAAGATGACCAAAATACACAATCCTACAAGGTTGTTTTCCCAAGCTCTGTAGAGCGGCGCCATTGAGAATTGTTAAATCCAGTGGCACACAAGGCCCTTTTCACAACTGTAGATTTCT--AAGATGATTCTTAACCTCACAAAAGCAACTTCATAAAGGCTAAGATGCAAATATTTA----CAATTTGCagagaggaggtctcactgtgtt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50555854 325 +  54856640 ATGAGAATGACCAGGAGAATTTACAGTTTTATCAACTCTGAAAGATAACCTTAAAGGGACAAACTTGAGCCTCATACCAGCCTCAAGTTCTTCAAAAGACTGGT---ATCCTTTGCAAACTGTTAAGAAGACCAAAATACACAATCCTACAAGGTTGTTTTCCCAAGCTCTCTAGAGTGGCACCATTGAGAATTGTTAAATCCAGTGGAACACAAGGCCATTTTCACAACCGTAGATTTCT--AAGATGATTCTCAACCTCACAAAAGCAACTTCATAAAAGCTAAGATGCAAATATTTA----CAATTTGCagagaggaggtatcactgtgtt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       706243 325 -   2910086 ATGAGCATGACCAGGAGAATTTACAGTTTTATCAACTCTGCAAGATGACCTTAAAGGGACCAACTTGAGCCTCATAACAGCCTCAAGTTCTTCAAAAGACTGGT---ATCCTTTGCAAACTGTTAAGAAGACCAAAATACACAATCCTACAAGGTTGTTTTCCCAAGCTCTCTAGAGTGGCTCCATTGAGAATTGTTAAATCCAGTGGCACACAAGGCCCTTTTCACAACCGTAGATTTCT--AAGATGATTCTCAGCCTCACAAAAGCAACTTCATAAAGGCTAAGATGCGAATATTTA----CAAtttgcagagaagaggtctcactgtgtt
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40727162 324 +  42888418 ATGAGAATGACCAGGAGCATTTACAGTTTGATCAACTCTGCAAGATGACCTTAAA-GGACAAACTTGAGCCTCTTATTAGCCTCAAGTTCTTCAAAAGACTGGC---ATCCTTTGCAAACTGTCAAGAAGACCAAAATACACAATCCTACAAGGTTGTTTTCCCAAGCTTTCTCGAGTGGTGCCATTGAGAATTGTTAAATCCAGTGGCACACCAGGCCCTTTTCACAACTGTAGATTTCT--AAGATGATTCTCAACCTCATGAAAGCAACTTCATAAAGGTTAAGATGCAAATATTTA----CAAtttgcagagaggaggtctcactgtgtt
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81437377 268 + 145441459 ATGAGAAAGACCAAATGCATTTACAGTTT-ACAAA--CTGTAGAATAGCATTGAATGAACAAATTCATATCCTACCTTGGCATCAAGCTTTTG--AAAATAGAT---ACCCTCTGCCCCCTTTGAAGGCTACCAGAATAATCAATTCTACAAGGTTGTTTTGCCAAGCCCTACTGACTCTCACCACTCAT------------------------AGGATCTTTTCACAATTGTACATTTATAAAAGATGATGTTCAACTTCACT-TTGTAACCTCATTAAG--------GCACACATCTA----CAATTTGCA---------------------
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54481356 296 +  91889043 ATGAGTATGGCCAGAG-----------------------ACAGGACAGCCTTAAAGGGACAAACTTGAGTCCCATATCATTCTCAAGTTCTTGAGAAATCTGGC---ATCCTTTGCAAGCTGTGAGGATGACCAGGATACTCAGTCCTACAAGGTTGTTTCCCCAAGCCTCCCAGAGAGCCACCACTGAGAACAGTTAAAGCCAC--ACACACAAGGGTCCTTCCACAACTGTAGATTTCT--AAG--GATTCTCAACCTCGCCAAGGCAACATCACAAAGGCTAAGATGCACACATTTACCATCAATCTTCAG------GTTTTTGttttgtt
i canFam3.chr3              C 0 I 119
e dasNov3.JH570731            1934026  56 +   3943991 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=602098.000000
s hg38.chr15_KI270850v1_alt    419246 62 +    430880 gcccaggctgaacttgaaactcctgggctcaagtgctcctcccaccttggcctcctgagtag
s panTro5.chr15              63571704 62 +  83230942 gcccaggctgaacttgaaactcttgggctcaaatgctcctcccaccttggcctcctgagtag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80528632 62 +  99763055 gcccaggctgaacttgaaactcttgggctcaagtgctcctcccaccttggcctcctgagtag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       128805 62 -   1709092 gcccaggctgaacttgaaactcctgggctcaagtgctcctcccaccttggcctactgagtag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17290879 61 - 121039945 gcccaggctggacttgaaactcct-ggctcaagtgctcctcccaccttggcttcccgagtag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60964779 62 + 169600520 gcccaagctggacttgagactcctgggctcaagtgctcctcccatcttggcctcccgagtag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108491521 62 - 171882078 gcccaagctggacttgagactcctgggctcaagtgctcctcccatcttggcctcccgagtag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       108026 62 -   2311642 ccccaagctggacttgagactcctgggctcaagtgctcctcccaccttggcctcccgagtag
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       100095 62 -   1987038 gcccaagctggacttgagactcctgggctcaagtgctcctcccaccttggcctcccgagtag
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21181612 62 -  24206276 gcccaagctggacttgagactcctgggctcaagtgctcctcccaccttggcctcccgagtag
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       123394 62 -   1397330 gcccaagctggacttgagactcctgggctcaagtgctcctcccaccttggcctcccgagtag
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       121441 60 -   1784207 gcccaaactggacttgagactcctgggctcaagtgctcctcccaccttggcct--cgagtag
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22328455 62 + 158406734 gcccaggctggacttgaaagtcctaggctcaaatgctcctctcacctcagcctcccaagtaa
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50556179 62 +  54856640 gcccaggctggacttgaaagttctaggctcaagtgctcctctcacctcagcctcccaagtag
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       706568 62 -   2910086 gcccaggctggacttcaaagttctaggctcaagtgctcctctcacctcagcctcccaagtag
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40727486 62 +  42888418 gcccaggctggacttgaaagtcctaggctcaagtgctcctctcacctcggcctcccaagtag
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81437645  0 + 145441459 C
e dasNov3.JH570731            1934026 56 +   3943991 I
e canFam3.chr3               54481652 119 +  91889043 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=400796.000000
s hg38.chr15_KI270850v1_alt    419308 41 +    430880 ctgagactacaggcacgtgcc----------------------attgcCTAG------------CACAATCtgca
s panTro5.chr15              63571766 41 +  83230942 ctgagactacaggcacgtgcc----------------------attgcCTAG------------CACAATCTGCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80528694 41 +  99763055 ctgagactacaggcacgtgcc----------------------attgcCTAG------------CACAATCTGCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       128867 41 -   1709092 ctgagactacaggcacgtgcc----------------------attgcCTAG------------CACAATCtgca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17290940 41 - 121039945 ctgagagtacaggcacgtgcc----------------------attgcctgg------------cAcaatctgca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60964841 41 + 169600520 ctgagactacaggcgcttgcc----------------------actgcctgg------------cacaatctgca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108491583 41 - 171882078 ctgagactacaggcgcttgcc----------------------actgcctgg------------cACAATCTGCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       108088 41 -   2311642 ctgagactacaggcgcttgcc----------------------actgcctgg------------cacaatcttca
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       100157 41 -   1987038 ctgagactacaggtgcttgcc----------------------actgcctgg------------cACAATCTGCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21181674 41 -  24206276 ctgagactacaggcgcttgcc----------------------actgcccgg------------cACAATCTGCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       123456 41 -   1397330 ctgagactacaggcgcttgcc----------------------actgcctgg------------cacaatctgca
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       121501 41 -   1784207 ctgagactacaggcgcttgcc----------------------attgcctgg------------cacaatctgca
i colAng1.NW_012117110v1    C 0 I 403
s calJac3.chr6               22328517 41 + 158406734 ccgagactacaggcacatgcc----------------------attgcctgg------------cATAATCTACA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50556241 41 +  54856640 ctgagactacaggcatgtgcc----------------------attgcctgg------------cACCATCTACA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       706630 41 -   2910086 ctgagactataggcatgtgcc----------------------attgcctgg------------cACAGTCTACA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40727548 41 +  42888418 ctgagactacaggcatgtgcc----------------------attgcctgg------------cACAATCTACG
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54481771 75 +  91889043 gtgagactctaggatcatgccctgggccgaaggcagacacccaactgctgagccacccaggcgtcccAATCTTCG
i canFam3.chr3              I 119 C 0
e mm10.chr7                  81437645  0 + 145441459 C
e dasNov3.JH570731            1934026 56 +   3943991 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=1459230.000000
s hg38.chr15_KI270850v1_alt    419349 129 +    430880 ttatcttaaggctacatgcttcattc-ttcactgcCTAATAAACATTAGCCGACTGCCTGCTCTCTATAGTGAGCACCCCAAGGGGCAGCAGATTAGACACAGACTAAACCAAAATAAAGTTTTGAAGTC
s panTro5.chr15              63571807 129 +  83230942 TTATCTTAAGGTTACATGCTTCATTC-TTCACTGCCTAATAAACATTAGCCGACTGCCTGCTCTCTATAGTGAGCACCCCAAGGGGCAGCAGATTAGACACAGACTAAACCAAAATAAAGTTTTGAAGTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80528735 129 +  99763055 TTATCTTAAGGTTACATGCTTCATTC-TTCACTGCCTAATAAACATTAGCCGACTGCCTGCTCTCTATAGTGAGCACCCCAAGGGGCAGCAGATTAGACACAGACTAAACCAAAATAAAGTTTTGAAGTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       128908 129 -   1709092 ttatcttaaggctacatgcttcattc-ttcactgcCTAATAAACATTAGCCGACTGCCTGCTCTCTATAGTGAGCACCCCAAGGGGCAGCAGATTAGACACAGACTAAACCAAAATAAAGTTTTGAAGTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17290981 128 - 121039945 -tatcttaaggctacatgcttcattc-ttcaCTGCCTACTAAACATTAGCCAACTGCCTGCTCTCTATAGTGAGCACCCCAAGGGGCAGCAGATTAGACACAGACTAAACCAAAATAAAGTTTTGAAGTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60964882 128 + 169600520 -tatcttaagGCTACATGCTTCATTC-TTCACTGCTTAATACACATTAGCCGACTGCCTGCTCTCTATAGTTAGCACCCCAAGGGGCAGCAGATTAGACACAGACTAAACCAAAATAAAGTTTTGAAGTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108491624 128 - 171882078 -TATCTTAAGGCTACATGCTTCATTC-TTCACTGCTTAATACACATTAGCCGACTGCCTGCTCTCTATAGTTAGCACCCCAAGGGGCAGCAGATTAGACACAGACTAAACCAAAATAAAGTTTTGAAGTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       108129 128 -   2311642 -tatcttAAGGCTACATGCTTCATTC-TTCACTGCTTAATACACATTAGCCGACTGCCTGCTCTCTATAGTTAGCACCCCAAGGGGCAGCAGATTAGACACAGACTAAACCAAAATAAAGTTTTGAAGTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       100198 128 -   1987038 -TATCTTAAGGCTACATGCTTCATTC-TTCACTGCTTAATACACATTAGCCGACTGCCTGCTCTCTATAGTTAGCACCCCAAGGGGCAGCAGATTAGACACAGACTAAATCAAAATAAAGTTTTGAAGTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21181715 128 -  24206276 -TATCTTAAGGCTACATGCTTCATTC-TTCACTGCCTAATACACATTAGCCGACTGCCTGCTCTCTATAGTTAGCACCCCAAAGGGCAGCAGATTAGACACAGACTAAACCAAAATAAAGTTTTGAAGTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       123497 128 -   1397330 -tatcttAAGGCTACATGCTTCATTC-TTCACTGCTTAATACACATTAGCCGACTGCCTGCTCTCTATAGTTATTACCCCAAGGGGCAGCAGATTAGACACAGACTAAATCAAAATAAAGTTTTGAAGTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       121945 129 -   1784207 TTATCTTAAGGTTACATGCTTCATTC-TTCACTGCCTAATACACATTAGCGGACTGCCTGCTCTCTATAGTTAGCACCCCAAGGGGCAGCAGATTAGACACAGACTAAACCAAAATAAAGTTTTGAAGTC
i colAng1.NW_012117110v1    I 403 C 0
s calJac3.chr6               22328558 128 + 158406734 -TATCTTAAGGCTACATACTTCATTC-TTCACTGCCTAATAAACATTAGCCAACTTACTGCTCTCTATAGTGAGCACCCCAAGGAGCAGCAGATTATACATGAACTAAACCAAAATTAAGTTTCTAAGTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50556282 128 +  54856640 -TATCTTAAGACTACACACTTCATTC-TTCACTGCCTAATAAACATTAGCCAACTTACTACTCTCTAGAGTGAGCACCCCAAGGAGCAGCAGATTAGACAAGGACTAAACCAAAATTAAGTTTCAAAGTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       706671 128 -   2910086 -TATCTTAAGGCTACACACTTCATTC-TTCACTGCCTAATAAACATTAGCCAACTTACTGCTCTCTACAGTGAGCACCCCAAGGAGCAACAGATTAGACATGGACTAAATCAAAATTAAGTTTCGAAGTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40727589 128 +  42888418 -TATCTTAAGGCTACACACTTCATTC-TTCACTGCCCAATAAACATTAGCCAACTTAATGCTCTCTATAGTGAGCACCCCAAGAAGCAGCAGATTAGACATGGACTAAACCAAAATTAAGGTTCGAAGTT
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81437645 124 + 145441459 -CATGTTAAGGCTATATACTTCATTCATTCACTGCTTAATAAGCATTA----ATTGTCCTCGATCTATAGGCAACACCTCAAGGGTTAA-ACATGAAACAAAGATCTAATTACAAGAAAGTTTGGAAGTT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54481846 127 +  91889043 -GGTCTTAAGGTTACATGCTTTATTCACTCACTGTCTCATCAACATTAACCAACAGTTTGCTATGTACAGTAAGCACCTGAAGGGTAGGCAGATTAGACA--GACTCAACCAAAAGAGATTTCTGAAGTC
i canFam3.chr3              C 0 C 0
e dasNov3.JH570731            1934026  56 +   3943991 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=85255.000000
s hg38.chr15_KI270850v1_alt    419478  9 +    430880 TGG-AAAAGA
s panTro5.chr15              63571936  9 +  83230942 TGG-AAAAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80528864  9 +  99763055 TGG-AAAAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       129037  9 -   1709092 TGG-AAAAGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17291109  9 - 121039945 TGG-AAAAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60965010  9 + 169600520 TGG-AAAAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108491752  9 - 171882078 TGG-AAAAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       108257  9 -   2311642 TGG-AAAAGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       100326  9 -   1987038 TGG-AAAAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21181843  9 -  24206276 TGG-AAAAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       123625  9 -   1397330 TGG-AAAAAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       122074  9 -   1784207 TGG-AAAAGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22328686 10 + 158406734 TGGAAAAAGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50556410 10 +  54856640 TGGAAAAAGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       706799 10 -   2910086 TGGAAAAAGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40727717 10 +  42888418 TGGAAAAAGA
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54481973  9 +  91889043 TAG-AAAGGA
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81437769  0 + 145441459 C
e dasNov3.JH570731            1934026 56 +   3943991 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=1367668.000000
s hg38.chr15_KI270850v1_alt    419487 141 +    430880 ACTTTTGGC------------------------AGG-caggagctcaaaaccagcctgggcaacatggcgaaaccctgtttctac-aaaaaatacaaaacattagacaggtatggtggtacatgcctgtagtcccagctactcaggaagctgaggtaggaggaatgc
s panTro5.chr15              63571945 141 +  83230942 ACTTTTGGC------------------------AGG-caggagctcaaaaccagcctgggcaacatggcgaaaccctgtttctac-aaaaaatacaaaacattagacaagtatgatggtacatgcctgtagccccagctactcaggaagctgaggtaggaggaatgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80528873 141 +  99763055 ACTTTTGGC------------------------AGG-caggagctcaaaaccagcctgggcaacatggcgaaaccctgtttctac-aaaaaatacaaaacattagacaggtatgatggtacatgcctgtagccccagctactcaggaagctgaggtaggaggaatgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       129046 141 -   1709092 ACTTTTGGG------------------------AGG-caggagctcaaaaccagcctgggcaacacggcgaaaccctgtttctac-aaaaaatacaaaacattagacaggtatggtggtacatgcctgcagtcccagctactcaggaagctgaggtaggaggaatgc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17291118 141 - 121039945 ACTTTTGGG------------------------AGG-caggagctcaagaccagcctgggcaacatggcgaaaccctgtttctac-aaaaaatacaaaacattagacaggtatggtggtacatgcctgtagtcccagctactcaggaagctgaggtaggaggaatgc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60965019 166 + 169600520 ACTtttgggaggctgggatgggtggaatgtttgagg-caggagttcaagaccagcctgggcaacacagcaaaaccctgtttctacaaaaaaatacgtaacattagacaggtatggtggtgcatgccagtagtcccagttactaaggaagctgaggtaggaggaatgc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108491761 166 - 171882078 ACTtttgggaggctgggacgggtggaatgtttgagg-caggagttcaagaccagcctgggcaacacagcaaaaccctgtttctacaaaaaaatacgtaacattagacaggtatggtggtgcatgccagtagtcccagttactaaggaagctgaggtaggaggaatgc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       108266 166 -   2311642 ACTtttgggaggctgggacgggtggaatgtttaagg-caggagttcaagaccagcctgggcaacacagcaaaaccctgtttctacaaaaaaatacgtaacattagacaggtatggtggtgcatgccagtagtcccagttactaaggaagctgaggtaggaggaatgc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       100335 166 -   1987038 ACTtttgggaggccgggacaggtggaatgtttgagg-caggagttcaagaccagcctgggcaacacagcaaaaccctgtttctacaaaaaaatacgtaacattagacaggtatggtagtgcacgccagtagtcccagttactaaggaagctgaggtaggaggaatgc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21181852 165 -  24206276 ACTtttgggaggccaggacgggtggaatgtttaagg-caagagttcaagaccagcctgggcaacacagcgaaaccttgtttctac-aagaaatacataacattagacaggtatggtggtgcatgccagtagtcccagttactaaggaagctgaggtaggaggaatgc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       123634 166 -   1397330 ACTtttgggaggccgggacgggtggaatgtttgagg-caggagttcaagaccagcctgggcaacacagcaaaaccctgtttctacaaaaaaatacgtaacattagacaggtatggtagtgcatgccagtagtcccagttactaaggaagctgaggtaggaggaatgc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       122083 165 -   1784207 ACTtttgggaggcaaggacgggtggaatgtttgagg-caggagatcaagaccagcctgggcaacacagcgaaaccctgtttctac-aaaaaatacataacattagacaggtatggtggtgcatgccagtagtcccagctactaaggaagctgaggtaggaggaatgc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22328696 166 + 158406734 ACTtttgggaggccaggatgggtgggttgcttcaggccaggaattcaagaccagcctgggcaacatgacaaaaccctgtttctac-aaaaaatacaaaacattagctagttgtggttgtacatgcctgtagtcccagctattcatgaagctgaggtgggaggaatgt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50556420 165 +  54856640 ACTtttgggaggccaggatgggtggattgctcgaagccaggaattcaagaccagcctgggcaacatgacaaaaccctgtttctac-aaaaaatagaaaacattagctaggtgtggttgtgcatgcctgtactcccagctattcatgaagctgaggt-ggaggaatgc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       706809 166 -   2910086 ACTtttgggaggctaggatgggtggattgcttgaggccaggaattcaagaccagcctgggaaacatgacaaaaccctgtttctac-aaaaaatacaaaacattaactaggtgtggttgcacatgcctgtagtcccagctattcatgaagctgaggtgggaagaatgc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40727727 166 +  42888418 ACTtttgggaggccaggatgggtggattgcttgaggccaggaattcaagaccagcctgggcaacatgacaaaaccctgtttctat-aaaaaatacaaaacattaactaggtgtggttgcgcatgcctgtagtcccagctattcatgaagctgaggtggtaggaatgc
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81437769   0 + 145441459 C
e dasNov3.JH570731            1934026  56 +   3943991 I
e canFam3.chr3               54481982   0 +  91889043 C
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=745709.000000
s hg38.chr15_KI270850v1_alt    419628 82 +    430880 ttgaacccaggaggcagaggttgcagtgagcagagattgtgccaccacactccagcatgggtgacagagcaagaccctgtct
s panTro5.chr15              63572086 82 +  83230942 ttgaacccaggaggcagaggttgcagtgagcagagattgtgccaccacactccagcatgggtgacagagcaagaccctgtct
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80529014 82 +  99763055 ttgaacccaggaggcagaggttgcagtgagcagagattgtgccaccacactccagcatgggtgacagagcaagacccggtct
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       129187 82 -   1709092 ttgaacccaggaggcagaggttgcagtgagcagagattgtgccaccacactccagcatgggtgacagagcaagaccctgtct
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60965185 82 + 169600520 ttgaacccaggaggcagaggtttcagtgagcagagattgtgccaccgcactccagcacgggtgacagagcaagaccctgtct
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108491927 82 - 171882078 ttgaacccaggaggcagaggtttcagtgagcagagattgtgccaccgcactccagcacgggtgacagagcaagaccctgtct
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       108432 82 -   2311642 ttgaacccaggaggcagaggttgcagtgagcagagattgtgccaccgcactccagcacgggtgacagagcaagaccctgtct
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       100501 82 -   1987038 ttgaacccaggaggcagaggttgcagtgagcagagattgtgccactgcactctagcacgggtgacagagcaagaccctgtct
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21182017 82 -  24206276 ttgaacccaggaggcagaggttgcagtgagcagagattgtgccaccgcactccagcacgggtgacagagcaagaccctgtct
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       123800 82 -   1397330 ttgaacccaggaggcagaggttgcagtgagcagagattgtgccaccgcactccagcacgggtgacagagcaagaccctgtct
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       122248 82 -   1784207 ttgaacccaggaggcagaggctgcagtgagcagagattacgccactgcactccagcacggatgacagagcaagaccctgtct
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22328862 80 + 158406734 ttgaacccaggaggcagaggttgcagtgagcagagattgtgccaccacatgctagcctgggtg--agagcaagaccctgtct
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50556585 82 +  54856640 ttgaacccaggaggcaaaggctgcagtgagcagagattgtgccaccacatgccagcctgggtgacagagcaagaccctgcct
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       706975 82 -   2910086 ttgaacccaggaggcaaaggttgcagtgagcagagactgtgccaccacatgccagcctgggtgacacagcaagaccctgtct
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40727893 82 +  42888418 ttgaacccaggaggcagaggttgcagtgagcagagattgtgccaccacatgctagcctgggtgacagagcaagaccctgtct
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81437769  0 + 145441459 C
e dasNov3.JH570731            1934026 56 +   3943991 I
e canFam3.chr3               54481982  0 +  91889043 C
e otoGar3.GL873530             718910 1898 -  36342412 I
e nomLeu3.chr6               17291259  0 - 121039945 C

a score=18873.000000
s hg38.chr15_KI270850v1_alt    419710 14 +    430880 caaaaaaaaaaaga
s panTro5.chr15              63572168 14 +  83230942 caaaaaaaaaaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80529096 13 +  99763055 -acaaaaaaaaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       129269 14 -   1709092 caaaaaaaaaaaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60965267  7 + 169600520 caaaaaa-------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108492009  7 - 171882078 caaaaaa-------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       108514  7 -   2311642 caaaaaa-------
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       100583  7 -   1987038 caaaaaa-------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21182099  7 -  24206276 caaaaaa-------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       123882  7 -   1397330 caaaaaa-------
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       122330 14 -   1784207 caaaaaaagaaaaa
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22328942  5 + 158406734 caaaa---------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50556667  5 +  54856640 caaaa---------
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       707057  3 -   2910086 caa-----------
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40727975 14 +  42888418 aaaaaaaaaaaaaa
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1934082 14 +   3943991 CAAAAAATAAAGGA
i dasNov3.JH570731          I 56 C 0
e mm10.chr7                  81437769  0 + 145441459 C
e canFam3.chr3               54481982  0 +  91889043 C
e otoGar3.GL873530             718910 1898 -  36342412 I
e nomLeu3.chr6               17291259  0 - 121039945 C

a score=38421.000000
s hg38.chr15_KI270850v1_alt    419724  9 +    430880 a---------------agaaaaag
s panTro5.chr15              63572182 24 +  83230942 aggaaaagaaagaaaaaGAAAAAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80529109 24 +  99763055 aggaaaagaaagaaaaaGAAAAAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       129283 19 -   1709092 a-----agaaagaaaaagaaaaAG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60965274  8 + 169600520 ----------------agaaaaag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108492016  8 - 171882078 ----------------agaaaaag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       108521  8 -   2311642 ----------------agaaaaag
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       100590  8 -   1987038 ----------------agaaaaag
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21182106 11 -  24206276 -------------aagaaaaaaag
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       123889  8 -   1397330 ----------------agaaaaag
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       122344 13 -   1784207 g-----------aaaaagaaaaag
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22328947 16 + 158406734 --------aaaaagaaagaaaaag
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50556672 19 +  54856640 -----gagaaaagaaaagaaaaag
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       707060 16 -   2910086 --------aaaagaaaagaaaaag
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40727989 21 +  42888418 a---aaagaaaagaaaaaaaaaaG
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81437769  9 + 145441459 ---------------AGGACAAAG
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1934096 14 +   3943991 ----------AGGTCTGGAAAAGG
i dasNov3.JH570731          C 0 C 0
e canFam3.chr3               54481982  0 +  91889043 C
e otoGar3.GL873530             718910 1898 -  36342412 I
e nomLeu3.chr6               17291259  0 - 121039945 C

a score=212792.000000
s hg38.chr15_KI270850v1_alt    419733 18 +    430880 aaCTAAGACCCGATCCTG
s panTro5.chr15              63572206 18 +  83230942 AACTAAGACCCGATCCTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80529133 18 +  99763055 AACTAAGACCCGATCCTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       129302 18 -   1709092 AACTAAGACCCGATCCTG
i gorGor5.CYUI01015556v1    C 0 C 0
s rheMac8.chr7               60965282 18 + 169600520 aaCCAAGACCCGATCCTG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108492024 18 - 171882078 aaCCAAGACCCGATCCTG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       108529 18 -   2311642 aaCCAAGACCCGATCCTG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       100598 18 -   1987038 aaCCAAGACCCGATCCTG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21182117 18 -  24206276 aaCCAAGACCCGATCCTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       123897 18 -   1397330 aaCCAAGACCCGATCCTG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       122357 18 -   1784207 aaCCAAGACCCGATCCTG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22328963 18 + 158406734 aaCTAAAACCTGATCCTG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50556691 18 +  54856640 aaCTAAGACCTGATGCTG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       707076 18 -   2910086 aaCTAAGACCTGATCCTG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40728010 18 +  42888418 AACTAAGACCTGATCCTG
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81437778 18 + 145441459 AACTAAGATCTGATCACG
i mm10.chr7                 C 0 I 3
s canFam3.chr3               54481982 18 +  91889043 AACGAAGATCTGATCAGG
i canFam3.chr3              C 0 I 3
s dasNov3.JH570731            1934110 18 +   3943991 AACTAAGCCCTGATCTTG
i dasNov3.JH570731          C 0 C 0
e otoGar3.GL873530             718910 1898 -  36342412 I
e nomLeu3.chr6               17291259  0 - 121039945 C

a score=2043920.000000
s hg38.chr15_KI270850v1_alt    419751 190 +    430880 ---TAAACATCCACAACACAGACTACAACGTGCTGTAAATGTACATTGT-CCTCCAAGCCAA--GGTGGCCT-GGAGGGA----------CAG-AATGTGCCTGGAAATGGGGGTAAAGAGGAAGTTCT--AAAGAACACAAGAGAGTAGAGAGGCAT--TATCAAAAGTGGTCCAGTGTGGTACAGCATTAGGT--ATAGGAG-----AGAAAATTGG
s panTro5.chr15              63572224 190 +  83230942 ---TAAACATCCACAACACAGACTACAACGTGCTGTAAACGTACATTGT-CCTCCAAGCCAA--GGTGGCTT-GGAGGGA----------CAG-AATGTGCCTGGAAATGGGGGTAAAGAGGAAGTTCT--AAAGAACACAAGAGAGTAGAGAGGCAT--TATCAAAAGTGGTCCAGTGTGGTACAGCATTAGGT--ATAGGAG-----AGAAAATTGG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80529151 190 +  99763055 ---TAAACATCCACAACACAGACTACAACGTGCTGTAAACGTACATTGT-CCTCCAAGCCAA--GGTGGCTT-GGAGGGA----------CAG-AATGTGCCTGGAAATGGGGGTAAAGAGGAAGTTCT--AAAGAACACAAGAGAGTAGAGAGGCAT--TATCAAAAGTGGTCCAGTGTGGTACAGCATTAGGT--ATAGGAG-----AGAAAATTGG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       129320 189 -   1709092 ---TAAACACCCATAACACAGACTACAACGTGCTGTAAACATACATTGT-CCTCCAAGCCAA--GGTGGCTT-GGAGGGA----------CAG-AATGTGCCTGGAAATGGGGGTAAAGAGGAAGTTCT--AAAGAACACAAGAGAGTAGAGAGGCAT--TATCAAAAGTGGTCCAGTGTGGTACAGCATTAGGT--ATAGGAG-----AG-AAATTGG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17291259 187 - 121039945 ---tAAACATCCGTAACACAGACTACAACGTGCTGTAAACGTACATTGT-TCTCCAAGCCAA-----GGCTT-GGAGGGA----------CAG-AATGTGCCTGGAAATGGGGGTAAAGAGGAAGTTCT--AAAGAACACAAGAGAGTAGAGAGGCAT--TATCAAAAGTGGTCCAGTGTGGTACAGCATTAGGT--ATAGGAG-----AGAAAATTGG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60965300 185 + 169600520 ---TAAACATCCATAACACAGACTACAATGTGCTGTATACATACATTGT-CCTCCAAGCCAC--CTTGGCTT-----GGA----------CAG-AATATGCCTGGAAATGAGAGTAAAGAGGAAGTTCT--GAAGAACAC-AGAGAGTAGAGAGGCAT--TATCAAAAGAGGTCCAGTGTGGTGCAGCATTAGGT--ATAGGAG-----AGAAGACTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108492042 185 - 171882078 ---TAAACATCCATAACACAGACTACAATGTGCTGTATACATACATTGT-CCTCCAAGCCAC--CTTGGCTT-----GGA----------CAG-AATATGCCTGGAAATGAGAGTAAAGAGGAAGTTCT--GAAGAACAC-AGAGAGTAGAGAGGCAT--TATCAAAAGAGGTCCAGTGTGGTGCAGCATTAGGT--ATAGGAG-----AGAAGACTGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       108547 185 -   2311642 ---TAAACATCCATAACACAGACTACAATGTGCTGTATACATACATTGT-CCTCCAAGCCAC--CTTGGCTT-----GGA----------CAG-AATATGCCTGGAAATGAGAGTAAAGAGGACGTTCT--GAAGAACAC-AGAGAGTAGAGAGGCAT--TATCAAAAGAGGTCCAGTGTGGTACAGCATTAGGT--ATAGGAG-----AGAAGACTGG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       100616 185 -   1987038 ---TAAACATCCATAACACAGACTACAATGTGCTGTATACATACATTGT-CCTCCAAGCCAC--CTTGGCTT-----GGA----------CAG-AATATGCCTGGAAATGGGAGTAAAGAGGAAGTTCT--GAAGAACAC-AGAGAGTAGAGAGGCAT--TATCAAAAGAGGTCCAGTGTGGTGCAGCATTAGGT--ATAGGAG-----AGAAGACTGG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21182135 185 -  24206276 ---TAAACATCCATAACACAGACTACAATGTGCTGTATACATACATTGT-CCTCCAAGCCAC--CTTGGCTT-----GGA----------CAG-AATATGCCTGGAAATGGGAGTAAAGAGGAAGTTCT--GAAGAACAC-AGAGAGTAGGGAGGCAT--TATCAAAAGAGGTCCAGTGTGGTGCAGCATTAGGT--ATAGGAG-----AGAAGACTGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       123915 185 -   1397330 ---TAAACATCCATAACACAGACTACAATGTGCTGTATACATACATTGT-CCTCCAAGCCAC--CTTGGCTT-----GGA----------CAG-AATATGCCTGGAAATGGGAGTAAAGAGGAAGTTCT--GAAGAACAC-AGAGAGTAGAGAGGCAT--TATCAAAAGAGGTCCAGTGTGGTGCAGCATTACGT--ATAGGAG-----AGAAGACTGG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       122375 185 -   1784207 ---TAAACATCCATAACACAGACTACAATGTGCTGTATACATACATTGT-CCTCCAAGCCAC--CTTGGCTT-----GGA----------CAG-AATGTGCCTGGAAATGGGAGTAAAGAGGAAGTTCT--GAAGAACAC-AGAGAGTAGAAAGGCAT--TATCAAAAGAGGTCCAGTGTGGTGCAGCATTAGGT--ATAGGAG-----AGAAGACTGG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22328981 192 + 158406734 ---TAAACAACCATAACACAGACTACAGTGTGCTGTAAACATACATTGT-CCTCTTAGCCAA--GGTGGCTC-AGAGGGA----------C---AATATGCCTGGAAATGGGGGTAAAGAGGAAATTCA--GAAGAACAC-AGAGAGTAGAGAGGCAT--TATCAAAAGTGGTCTAGTGTGGTACAGCATTAGGT--ATAGGAGAGGAAAGAAGATTGG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50556709 203 +  54856640 ---CAAACATCCATAACACAGACTACAGTATGCTCTAAACATACACTGTCCCTCTAAGCCAA--GGTGGCTT-AGAGAGACAATATGCCTC---AATATGCCTGAAAATGGAGGTAAAGAGGAAGTTCA--GAGGAACAG-AGAGAGCAGAGAAACAT--TATTAAAAGTGGTCCAGTGTGGTACAGCATTAGGG--ACAGGAGAGGAGAGAAGATTGG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       707094 192 -   2910086 ---TAAACATCCATAACACAAACTACGGTGTGCTGTAAACATACATTGT-CCTCTAAGCCAA--GATGGCTC-AGAGAGA----------C---AATATGCCTGGAAATGGGGATAAAGAGGAAGTTTA--GAAGAACAC-AGAGAGCAAAGAGGCAT--TATCAAAAGTGGTCCAGTGTGGTACAGCATTAGGT--ATAGGAGGGGAGAGAAGATTGG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40728028 187 +  42888418 ---TAAACATCCATAACACAGACTACAGTGTGCTGTAAACATACATTGT-CCACTAAGCCAA--GGTGGCTC-GGAGGGA----------C---AATATGCCTGGAAATAGGGGTAAAGAGGAAGTTCA--GAAGAACAC-AGAGAGTAGAGAGGCAT--TATCAAAAGTGGTCCAGTGTGGCACAGCATTAGGT--ATAGGAG-----AGAAGATTGG
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81437799 191 + 145441459 ---TAAATAA-CATAATACAAGCTACAACAAGCTGTAAACATATTCTGT-CCTCTAACCCCA----TGACTTTGGATGGA------------G-AATGTATTTGGAAGCTGGAGAAAGGAAGGGGTCTAGGGAATAACAC-AGAAATCAGAAAGGTATTATATCAAAAGTGTTCCAGAGTGGCAGAGTATTAGGT--ACAGAAT---AAAGGAGACTGG
i mm10.chr7                 I 3 C 0
s canFam3.chr3               54482003 187 +  91889043 ---TCAACAGCCACCACACAAGCTATAGTTTGCTGGGATCATACATTGT-CCTCTCAGCCAA--AGGGGCTC---AAAGA----------CAACAATGTACCTGAAAGTACAGG---AAGGAAAAGTCT--GAAGCACAA-AGAGAACAGAGGAGCTT--TATCAAAAGTGGTCCAGTATGGCAAGGTATGGGGTTCTCAGGAG-----AGCAAACTGG
i canFam3.chr3              I 3 I 354
s dasNov3.JH570731            1934128 186 +   3943991 TTATAAACAACCACAACACAG-CTATAATGTGCTGTAAATGAGCAATAT-CACTTAAGTCAAGGGGGGGCTG-AGAGGAA----------GAG-AATGTCCGTGGAAATG------AAGAGGAAAATCT--GGAGAACAC-CAAGAGCAGAAGAGCAC--CATCAACAGTAACCCAGTCTGGTGGAACATAAGGC--ACAG-AG-----AAAAGACTGT
i dasNov3.JH570731          C 0 C 0
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=236830.000000
s hg38.chr15_KI270850v1_alt    419941 53 +    430880 ---AAAAGCCTCATA-------------TGCCAAATTAAGGAGTCAGCAT-TGT-------------------CTTTCAAT---------ACACAAAA
s panTro5.chr15              63572414 53 +  83230942 ---AAAAGCCTCATA-------------TGCCAAATTAAGGAGTCAGCAT-TGT-------------------CTTTCAAT---------ACACAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80529341 53 +  99763055 ---AAAAGCCTCATA-------------TGCCAAATTAAGGAGTCAGCAT-TGT-------------------CTTTCAAT---------ACACAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       129509 53 -   1709092 ---AAAAGCCTCATA-------------TGCCAAATTAAGAAGTCAGCGT-TGT-------------------CTTTCAAT---------ACACAAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17291446 53 - 121039945 ---AAAAGCCTCATA-------------CGCCAAATTAAGGAGTCAGCAT-TGT-------------------CTTTCGAT---------ACACAAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60965485 34 + 169600520 ---AAAAGCCTCATA-------------TGCCAAATTAAGGAGTTAGCAT------------------------------------------------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108492227 34 - 171882078 ---AAAAGCCTCATA-------------TGCCAAATTAAGGAGTTAGCAT------------------------------------------------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       108732 34 -   2311642 ---AAAAGCCTCATA-------------TGCCAAATTAAGGAGTCAGCAT------------------------------------------------
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       100801 34 -   1987038 ---AAAAGCCTCATA-------------TGCCAAATTAAGGAGTCAGCAT------------------------------------------------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21182320 34 -  24206276 ---AAAAGCCTCATA-------------TGCCAAATTAAGGAGTCAGCAT------------------------------------------------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       124100 34 -   1397330 ---AAAAGCCTCATA-------------TGCCAAATTAAGGAGTCAGCAT------------------------------------------------
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       122560 34 -   1784207 ---AAAAGCCTCATA-------------TGCCAAATTAAGGAGTCAGCAT------------------------------------------------
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22329173 34 + 158406734 ---AAAAGCCTCATA-------------TGCCAAATTAAGGAGTCAACAT------------------------------------------------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50556912 34 +  54856640 ---AAAAGGCTGATA-------------TGCCAAATTAAGGAGTCAACAT------------------------------------------------
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       707286 54 -   2910086 ---AAAAGACTCATA-------------TGCCCAATTAAGGAGTCAACATGGTC-------------------TTTTCAAT---------ACACAAAA
i cebCap1.NW_016107610v1    C 0 I 46
s aotNan1.NW_018505940v1     40728215 34 +  42888418 ---AAAAGCCTCATA-------------TGCCAAATTAAGGAGTCAACAT------------------------------------------------
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81437990 62 + 145441459 ---AAAGGCCTCATA-------------CAGCAGGTTAAGTACTTAGCAG-TAT-------------------CTTTATATCAGAGCTTACCAAAAAA
i mm10.chr7                 C 0 I 1
s canFam3.chr3               54482544 60 +  91889043 ---aaagg---caga-------------cactcaaccactgagccacccg-ggtaccccCAGAGCTTTCCAAATTTTAAA------------------
i canFam3.chr3              I 354 C 0
s dasNov3.JH570731            1934314 50 +   3943991 AAAGAAGGCCTCACATGTAAGGGGTGGGTGCTATATTCTAGATCAGAGGT------------------------------------------------
i dasNov3.JH570731          C 0 C 0
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=395684.000000
s hg38.chr15_KI270850v1_alt    419994 76 +    430880 TT---GTGTCT---TTT--CAATACACAAAAATTAA--CCTAGCTT-TTAATTACTG-TAATAAAAGTAC--TATATAT---ATATGGAC-----------------------TAC
s panTro5.chr15              63572467 76 +  83230942 TT---GTGTCT---TTT--CAACACACAAAAATTAA--CCTAGCTT-TTAATTACTG-TAATAAAAGTAC--TATATAT---ATATGGAC-----------------------TAC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80529394 76 +  99763055 TT---GTGTCT---TTT--CAACACACAAAAATTAA--CCTAGCTT-TTAATTACTG-TAATAAAAGTAC--TATATAT---ATATGGAC-----------------------TAC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       129562 76 -   1709092 TT---GTGTCT---TTT--CAATACACAAAAATTAA--CCTAGCTT-TTAATTACTG-TAATAAAAGTAC--TATATAT---ATATGGAC-----------------------TAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17291499 99 - 121039945 TT---GTGTCT---TTT--CAATACACAAAAATTAA--CCCAGCTT-TTAATTACTG-TAATAAAAGTAC--tatatat---atatatatatatatatatatataaggatatatat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60965519 66 + 169600520 ------TGTCT---TTT--CAATACACAAAAATTAA--CCTAGTTT-----TTAGTG-TAATGAAAGTAC--TATATAT---ATACA--------------------------CAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108492261 66 - 171882078 ------TGTCT---TTT--CAATACACAAAAATTAA--CCTAGTTT-----TTAGTG-TAATGAAAGTAC--TATATAT---ATACA--------------------------CAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       108766 66 -   2311642 ------TGTCT---TTT--CAATACACAAAAATTAA--CCTAGTTT-----TTAGTG-TAATGAAAGTAC--TATATAT---ATACA--------------------------CAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       100835 66 -   1987038 ------TGTCT---TTT--CAATACACAAAAATTAA--CCTAGTTT-----TTAGTG-TAATGAAAGTAC--TATATAT---ATACA--------------------------CAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21182354 72 -  24206276 ------TGTCT---TTT--CAATACACAAAAATTAA--CCTAGATT-TTAATTAGTG-TAATGAAAGTACTATATATAT---ATACA--------------------------CAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       124134 66 -   1397330 ------TGTCT---TTT--CAATACACAAAAATTAA--CCTAGTTT-----TTAGTG-TAATGAAAGTAC--TATATAT---ATACA--------------------------CAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       122594 70 -   1784207 ------TGTCT---TTT--CAATACACAAAAATTAA--CCTAGTTT-TTAATTACTG-TAATGAAAGTAC--TATATAT---ATATA--------------------------CAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22329207 62 + 158406734 ------TGTCT---TTT--CAATACACAAAAATTAA--CCTCATTT-TTATTTACTG-TAATAATAGTTC--CATATAT-------------------------------------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50556946 62 +  54856640 ------TGTCT---TTT--CAACACACAAAAATTAA--CCTCATTT-TTATTTACTG-TAACAATAGTCC--CATATGT-------------------------------------
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40728249 62 +  42888418 ------TGTCT---TTT--CAATACACAAAAATTAA--CCTCATTT-TTATTTACTG-TAACAGTAGTAC--CATATAT-------------------------------------
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81438053 74 + 145441459 TTAAAGCCCCC---TTTAACAATGCAAAACAAGAAAACCCTAATTTTTTGTTTATTA-TAATAG-----C--TATAAATAAAATA-------------------------------
i mm10.chr7                 I 1 C 0
s canFam3.chr3               54482604 70 +  91889043 ----AGGCCCC---TCT--TAACATACAAATACTT---TTTGATTT-TTATTTAGTA-GTACAGATATGC--TATAAAT---CTATG--------------------------TA-
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1934364 63 +   3943991 -------TTCCAAACTT--TAATACATAAAACT--A--CCTGTTCT-TTATATACTATTAACAGATGTAC--TATATGC-------------------------------------
i dasNov3.JH570731          C 0 C 0
e cebCap1.NW_016107610v1       707340 46 -   2910086 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=478732.000000
s hg38.chr15_KI270850v1_alt    420070 47 +    430880 ATGGATT-CCAGATCCTGGCCACATCTAAAGGCAAGTAAATAACAAAG---------
s panTro5.chr15              63572543 47 +  83230942 ATGGATT-CCAGATCCTGGCCACATCTAAAGGCAAGTAAATAACAAAG---------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80529470 47 +  99763055 ATGGATT-CCAGATCCTGGCCACATCTAAAGGCAAGTAAATAACAAAG---------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       129638 47 -   1709092 ATGGATT-CCAGATCCTGGCCACATCTAAAGGCAAGTAAATAACAAAG---------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17291598 44 - 121039945 atGGATT-CCAGATCCTGGCCACATCTAAAGGCAAGTAAAT---AAAG---------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60965585 47 + 169600520 ATAGATT-CCAGATCTTTGCCACACCTAAAGGCAAGTAAATAACAATG---------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108492327 47 - 171882078 ATAGATT-CCAGATCTTTGCCACACCTAAAGGCAAGTAAATAACAATG---------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       108832 47 -   2311642 ATAGATT-CCAGATCTTTGCCACATCTAAAGGCAAGTAAATAACAATG---------
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       100901 46 -   1987038 ATAGATT-CCAGATCCTTGCCACATTT-AAGGCAAGTAAATAACAATG---------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21182426 47 -  24206276 ATAAATT-CCAGATCCTTGCCACATCTAAAGGCAAGTAAATAACAATG---------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       124200 47 -   1397330 ATAGATT-CCAGATCCTTGCCACATCTAAAGGCAAGTAAATAACAATG---------
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       122664 47 -   1784207 ATAGATT-CCAGATCCTTGCTACATCTAAAGGCAAGTAAATAACAATG---------
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22329269 47 + 158406734 ATGGATT-CCAGATCCTGGCCACATCTAAAGGCAAGTAAATAAAAGAG---------
i calJac3.chr6              C 0 I 1
s saiBol1.JH378108           50557008 47 +  54856640 ATGGTTT-CCAGATCCTGGCCACATCTAAAGGCAAGTAAATAAAAAAG---------
i saiBol1.JH378108          C 0 I 6484
s cebCap1.NW_016107610v1       707386 47 -   2910086 ATGGGTT-CCAGATCCTGGCCACATCTAAAGGCAAGTAAATAAAAAAG---------
i cebCap1.NW_016107610v1    I 46 I 6834
s aotNan1.NW_018505940v1     40728311 47 +  42888418 ATGGATG-CCAGATCCTGGCTACATCTAAAGGCAAGTAAATAATAAAG---------
i aotNan1.NW_018505940v1    C 0 I 1
s mm10.chr7                  81438127 41 + 145441459 ------T-CAGGACCTTGGCCATATCTGAAGGCAAGAAAATGATCAAC---------
i mm10.chr7                 C 0 I 2
s canFam3.chr3               54482674 35 +  91889043 ------T-TCAGATCCTGGTGA-----GGAGATATGTACACAGTATG----------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1934427 56 +   3943991 ATGGATTCCCAGACCCTGGTCA-AGTTAAAGACAAGTACATGTCAACTGTATGTATG
i dasNov3.JH570731          C 0 C 0
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=9555.000000
s hg38.chr15_KI270850v1_alt    420117 1 +    430880 T
s panTro5.chr15              63572590 1 +  83230942 T
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80529517 1 +  99763055 T
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       129685 1 -   1709092 T
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17291642 1 - 121039945 T
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60965632 1 + 169600520 T
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108492374 1 - 171882078 T
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       108879 1 -   2311642 T
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       100947 1 -   1987038 T
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21182473 1 -  24206276 T
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       124247 1 -   1397330 T
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       122711 1 -   1784207 T
i colAng1.NW_012117110v1    C 0 C 0
s mm10.chr7                  81438170 1 + 145441459 T
i mm10.chr7                 I 2 C 0
s canFam3.chr3               54482709 1 +  91889043 T
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1934483 1 +   3943991 T
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40728358 1 +  42888418 I
e calJac3.chr6               22329316 1 + 158406734 I
e cebCap1.NW_016107610v1       707433 6834 -   2910086 I
e otoGar3.GL873530             718910 1898 -  36342412 I
e saiBol1.JH378108           50557055 6484 +  54856640 I

a score=187376.000000
s hg38.chr15_KI270850v1_alt    420118 16 +    430880 GAGTCTTAGAAGGAGA
s panTro5.chr15              63572591 16 +  83230942 GAGTCTTAGAAGGAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80529518 16 +  99763055 GAGTCTTAGAAGGAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       129686 16 -   1709092 GAGTCTTAGAAGGAGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17291643 16 - 121039945 GAGTCTTAGAAGGAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60965633 16 + 169600520 GAGTCTTAGAAAGAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108492375 16 - 171882078 GAGTCTTAGAAAGAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       108880 16 -   2311642 GAGTCTTAGAAAGAGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       100948 16 -   1987038 GAGTCTTAGAAAGAGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21182474 16 -  24206276 GAGTCTTAGAAAGAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       124248 16 -   1397330 GAGTCTTAGAAAGAGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       122712 16 -   1784207 GAGTCTTAGAAAGAGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22329317 16 + 158406734 GAGTCTTATAAGAAGA
i calJac3.chr6              I 1 C 0
s saiBol1.JH378108           50563539 16 +  54856640 GAGTCTTAGAAGGAGA
i saiBol1.JH378108          I 6484 C 0
s cebCap1.NW_016107610v1       714267 16 -   2910086 gaGTCTTAGAAGGAGA
i cebCap1.NW_016107610v1    I 6834 C 0
s aotNan1.NW_018505940v1     40728359 16 +  42888418 AAGTCTTAGAAGGAGA
i aotNan1.NW_018505940v1    I 1 C 0
s mm10.chr7                  81438171 13 + 145441459 AAGTCTT---TATAGA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54482710 13 +  91889043 AAGTTTC---AGGAGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1934484 16 +   3943991 GAGTTTCTGAAGGAAA
i dasNov3.JH570731          C 0 I 520
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=401306.000000
s hg38.chr15_KI270850v1_alt    420134 41 +    430880 CCACCAGCAACTACATGACAGATAAGTGGCAGAAGGATTAG
s panTro5.chr15              63572607 41 +  83230942 CCACCAGCAACTACATGACAGATAAGTGGCAGAAGGATTAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80529534 41 +  99763055 CCACCAGCAACTACATGACAGATAAGTGGCAGAAGGATTAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       129702 41 -   1709092 CCACCAGCAACTACATGACAGATAAGTGGCAGAAGGATTAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17291659 41 - 121039945 CCACCAGCAACTACATGACAAATAAGTGGCAGAAGGATTAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60965649 41 + 169600520 TCACCAACAAATACATCACAGATAAGTGGCAGAAGGATTAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108492391 41 - 171882078 CCACCAACAAATACATCACAGATAAGTGGCAGAAGGATTAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       108896 41 -   2311642 CCACCAACAAATACATCACAGATAAGTGGCAGAAGGATTAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       100964 41 -   1987038 CAACCAACAAATACATCACAGATAAGTGGCAGAAGGATTAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21182490 41 -  24206276 CCACCAACAAATACATCACAGATAAGTGGCAGAAGGATTAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       124264 41 -   1397330 CCACCAACAAATACATCACAGATAAGTGGCAGAAGGATTAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       122728 41 -   1784207 CCACCAACAAATACATCACAGATAAGTGGCAGAAGGATTAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22329333 41 + 158406734 CAGTCAGCAACTACATGAAAGGTAAATGGCAGAAAGATTAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50563555 41 +  54856640 CCACCAGCAACTACATGAAAGGTAAGTGGCAGAAGGATTAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       714283 41 -   2910086 CCACCAGCAACTACATGAAAGGTAAGTGGCAGAAGGATTAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40728375 41 +  42888418 CCGCCAGCAACTACATGAAAGATAAGTGGCAGAAGGATTAG
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81438184 31 + 145441459 GTGGCAGCAGTTGTAGAAGAGAT--------GAAGA--CAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54482723 38 +  91889043 TCTCAAGCAACTATGTGAAAGAGGACAG---GAAGAACCAG
i canFam3.chr3              C 0 C 0
e dasNov3.JH570731            1934500 520 +   3943991 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=1710906.000000
s hg38.chr15_KI270850v1_alt    420175 185 +    430880 TGAG-AAAGTACCACAGTAGTCTAGGGAACAGATGCAGACTTGGGAG-----TC---T---GGGAGAAA-GGTA-TTCCTTAGGAGAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------GGAGTCTG--------------------------------------AAAAAAAAATCTAATTT----AGGAATGTGTCTGGTCACCCTGCCCCACTCCTAATCCTGTTAGGAACATA---CACAC-----------------------------------------------------------CTTCCCAAA
s panTro5.chr15              63572648 185 +  83230942 TGAG-AAAGTACCATAGTAGTCTAGGGAACAGATGCAGACTTGGGAG-----TC---T---GGGAGAAA-GGTA-TTCCTTAGGAGAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------GGAGTCTG--------------------------------------AAAAAAAAATCTAATTT----AGGAATGTGTCTGGTCACCCTGCCCCACTCCTAATCCTGTTAGGAACATA---CACAC-----------------------------------------------------------CTTCCCAAa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80529575 184 +  99763055 TGAG-AAAGTACCATAGTAGTCTAGGGAACAGATGCAGACTTGGGAG-----TC---T---GGGAGAAA-GGTA-TTCCTTAGGAGAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------GGAGTCTG---------------------------------------AAAAAAAATCTAATTT----AGGAATGTGTCTGGTCACCCTGCCCCACTCCTAATCCTGTTAGGAACATA---CACAC-----------------------------------------------------------CTTCCCAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       129743 186 -   1709092 TGAG-AAAGTACCACAGTAGTCTAGGGAACAGATGCAGACTTGGGAG-----TC---T---GGGAGAAA-GGTA-TTCCTTAGGAGAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------GGAGTCTGA-------------------------------------AAAAAAAAATCTAATTT----AGGAATGTGTCTGGTCACCCTGCCCCACTCCTAATCCTGTTAGGAACATA---CACAA-----------------------------------------------------------CTTCCCAAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17291700 185 - 121039945 TGAG-AAAGTACCACAGTAGTCTAGGGAACAGATGCAGACTTGGGAG-----TC---T---GGGAGAAA-GGTA-TTCCTTAGGAGAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------GGAGCCTGA-------------------------------------AAAAAAAAATCTAATTT----AGGAATCTGTCTGGTCACCCTGCCCTACTCCTAA-CCTGTTAGGAACATA---CACAA-----------------------------------------------------------CTTCCCAAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60965690 180 + 169600520 TGAG-AAAGTACCACAGTAGTGTAGGGGACAGATGCAGACTTGGGAG-----TC---T---GGGAGAAA-GGTA-TTCCTTAGGAGAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------GGAGCCTGG-------------------------------------AAAAAAATATATAATTT----AGGAATATGTCTGGTCACCCTGCCCCACTCCTAATCCTGTTAGAACAGGA--------------------------------------------------------------------TTCCCAAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108492432 180 - 171882078 TGAG-AAAGTACCACAGTAGTGTAGGGGACAGATGCAGACTTGGGAG-----TC---T---GGGAGAAA-GGTA-TTCCTTAGGAGAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------GGAGCCTGG-------------------------------------AAAAAAATATATAATTT----AGGAATATGTCTGGTCACCCTGCCCCACTCCTAATCCTGTTAGAACAGGA--------------------------------------------------------------------TTCCCAAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       108937 180 -   2311642 TGAG-AAAGTACCACAGTAGTGTAGGGGACAGATGCAGACTTGGGAG-----TC---T---GGGAGAAA-GGTA-TTCCTTAGGAGAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------GGAACCTGG-------------------------------------AAAAAAATATATAATTT----AGGAATATGTCTGGTCACCCTGCCCCACTCCTAATCCTGTTAGAACAGGA--------------------------------------------------------------------TTCCCAAa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       101005 180 -   1987038 TGAG-AAAGTACCACAGTAGTGTAGGGGACAGATGCAGACTTGGGAG-----TC---T---GGGAGAAA-GGTA-TTCCTTAGGAGAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------GGAGCCTGG-------------------------------------AAAAAAATATACAATTT----AGGAAAATGTCTGGTCACCCTGCCCCACTCCTAATCCTGTTAGAACAGGA--------------------------------------------------------------------TTCCCAAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21182531 174 -  24206276 TGAG-AAAGTACCACAGTAGTGTAGGGGACATATGCAGATTTGGGAG-----TC---T---GGGAGAAA-GGTA-TTCCTTAGGACAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------GGAACCTGG--------------------------------------AAAAAATATACAATTT----AGGAATATGTCTGGTCACCCTGCCCCACTCCTAATCCTGTT-----AGGA--------------------------------------------------------------------TTCCCAAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       124305 180 -   1397330 TGAG-AAAGTACCACAGTAGTGTAGGGGACAGATGCAGACTTGGGAG-----TC---T---GGGAGAAA-GGTA-TTCCTTAGGAGAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------GGAGCCTGG-------------------------------------AAAAAAATATACAATTT----AGGAATACGTCTGGTCACCCTGCCCCACTCCTAATCCTGTTAGAACAGGA--------------------------------------------------------------------TTCCCAAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       122769 181 -   1784207 TGAG-AAAGTACCACAGTAGTCTAGGGGACAGACGCAGACTTGGGAG-----TC---T---GGGAGAAA-GGTA-TTCCTTAGGAGAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------AAAGCCTGG------------------------------------AAAAAAAATATATAATTT----AGGAATATGTCTGGTCCCCCTGCCCCACTCCTAATCCTGTTAGAACAGGA--------------------------------------------------------------------TTCCCAAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22329374 184 + 158406734 TGAG-AAAGTACCACTATAGTCCAGGGGACAGGTGCAGACTTGGGAG-----CC---T---TGGAGAAA-GGTA-TTCCTTAGGAGAAG---AAGG-----AAATCTTACCATTTCAA--------------------------------------------------------------------------------------------------GGGGCCTG---------------------------------------AAAAAAAATCTAATTT----AGGAATATGTCTGGCCACCCTGATCCACTCCTAATCTTGTCAGGAAAATA---TACAA-----------------------------------------------------------CTTCCAAAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50563596 183 +  54856640 TGAG-AAAGTACCACTGTAGTCTAGGGGACAGGTGCAGACTTGGGAG-----TC---T---CGGAGAAA-GGTA-TTCCTTAGGAGAGG---AAGG-----AAATCTTACCATTTCAA--------------------------------------------------------------------------------------------------GGAGCCTG----------------------------------------AAAAAAATCTAATTT----AGGAATATGTCTGGCCACCCTGATCCACTCCTAATCTTTTTAGGAAAATA---CACGA-----------------------------------------------------------CGTCTAAAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       714324 179 -   2910086 TGAG-AAAGTACCACTGT-----AGGGGTCAGGTGCAGACTTGGGAG-----TC---T---TGGAGAAA-GGTA-TTCCTTAGGAGAGG---AAGG-----AAATCTTACTATTTCAA--------------------------------------------------------------------------------------------------GGAGCCTG---------------------------------------AAAAAAAATCTAATTT----AGGAATATGTCTGGCCACCCTGATCCACTCCTGATCTTGTTAGGAAAATA---CACAA-----------------------------------------------------------CTTCCAAAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40728416 182 +  42888418 TGAG-AAAGTACCACTGTAGTCTA-AGGACAGGTGCAGACTTCAGAG-----TC---T---CGGAGAAA-GGTA-TTCCTTAGGAGAGG---AAGG-----AAATCTTACCATTTCAA--------------------------------------------------------------------------------------------------GGAGCCTG----------------------------------------AAAAAAATCTAATTT----AGGAATATGTCTGGCCATCCTGATCCACTCCTAATCTTGTTAGGAAAATA---CACAA-----------------------------------------------------------CTTCCAAAA
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81438215 333 + 145441459 TGAGAAAAGCATGACAATAGT-TAGGAGACACATACAGACTTGGGGAAGCCTTG---T---GAGAGAAA-TTCA-TTCTTCATGAGGGAGGTATAG-----AATGCTTATTCTTTCAAAAAAAATCTAATTTTAAGAATCTATCCAGctgagttcaattcccagcaacaacatggtggctcacaaccatctgtaacaggatccgacgtcctcttctggtgtctgaagaacatgacagtgtactgagtactcatatacatacaataaataaatcttttttaaaaaagaaTCTATCCAGCCACTTTGTCTCACTCCTAATACCATTAGGAAGATG---CATCA-----------------------------------------------------------TATTCCTGA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54482761 248 +  91889043 TGAG-GAAAGTACACAGTCATCCAGAGA--AGATGCAGGCCCAGAGA-----CCCTGT---GGGAGAAACTGGC-TTCCCCAGGAGGAGGGCAAGGTCTTAGAATCTTACCGTCTTGA--------------------------------------------------------------------------------------------------GCAGCCTG----------------------------------------AAAAAAACCCAATTT----AGAAATATGCCTGGCCA----ACTCTACTCCAAATCCCATGAGGAACATA---TACCAAggatgcctgggtggctcagcggttaagcacctgccttcggcccagggtgttatcctggagtcccagg
i canFam3.chr3              C 0 I 130
s dasNov3.JH570731            1935020 194 +   3943991 TGAA-AAAATGCAACATTGGTCTAGGAGACAGACAAAGACCTAAAGT-----CC---CTTGGGGAGAAA-CTTGCTTCCCCAGGAGAAG---ACAACCTAAGAATCTTACTATTGCAC--------------------------------------------------------------------------------------------------ATATCCTG-----------------------------------------AAAAACTCTAATTT----AGGAGTATTCTTGGCCATCTTGACAGACTCTCACCCCCATTAGGAACAATTGCCATAA-----------------------------------------------------------ACTCCAAAC
i dasNov3.JH570731          I 520 C 0
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=5602769.000000
s hg38.chr15_KI270850v1_alt    420360 514 +    430880 TCAAGGCAAATGATATCTGACATGCCT---CCCTCCCCTTCTCTC-ACATACATCAAGCCAGAGCTCTAGCTTAAGATGAC--------ATTATAATAAAAGTGAATGAGGTGTTCAATGTATATTCCAAACTGTTTCATCTT---A----TAATTACCAATG-TTTGCCT----TAA-----CCAATTTGGAA-GG-A-AAAAAAAAAAATCA--AAGCCAGGAC-TGTCAGAT--GGCGAACAGATCTACTACtctcctt-tgtgtacaatagggataaaag--taatactat--ctcataaggct-ttttgtgaattaatgcac---ataaag-tacttagcatagggcctgacatgtaattatgtgctgaaccaacgAATACTGTCTATCAGTCGTATCATTATTA-----TTAT---------TCAGAGGCCACCACAGGGATCCTTGA-GGAAG--GATCTATTGGCTCATTAAGTGA-----------ACCAAAGACCTATGGCAACTATTTCTCTGAAGACTCCAGGCCCTTCTATTCCT-GGTACCCCCTAACTCTTCCTCTTAATCATTT-GACTTAAAAT
s panTro5.chr15              63572833 515 +  83230942 tcaaggcaaatgatatctgacatgcct---cccTCCCCTTCTCTC-ACATACATCAAGCCAGAGCTCTAGCTTAAGATGAC--------ATTATAATAGAAGTGAATGAGGTGTTCAATGTATATTCCAAACTGTTTCATCTT---A----TAGTTACCAATG-TTTGCCT----TAA-----CCAATTTGGAA-GG-AGAAAAAAAAAAATCA--AAGCCAGGAC-TGTCACAT--GGCGAACAGATCTACTACtctcctt-tgtgtacaatagggataaaag--taatactat--ctcataaggct-ttttgtgaattaatgcac---ataaag-tacttagcatagggcctgacatgtaattatgtgctgaaccaacgAATACTGTCTATCAGTCGTATCATTATTA-----TTAT---------TCAGAGGCCACCACAGGGATCCTTGA-GGAAG--GATCTATTGGCTCATTAAGTGA-----------ACCAAAGACCTATGGCAACTATTTCTCTGAAGACTCCAGGCCCTTCTATTCCT-GGTACCCCCTAACTCTTCCTCTTAATCATTT-GACTTAAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80529759 513 +  99763055 TCAAGACAAATGATATCTGACATGCCT---CCCTCCCCTTCTCTC-ACATACATCAAGCCAGAGCTCTAGCTTAAGATGAC--------ATTATAATAAAAGTGAATGAGGTGTTCAATGTATATTCCAAACTGTTTCATCTT---A----TAGTTACCAATG-TTTGCCT----TAA-----CCAATTTGGAA-GG---AAAAAAAAAAATCA--AAGCCAGGAC-TGTCACAT--GGCGAACAGATCTACTACtctcctt-tgtgtacaatagggataaaag--taatactat--ctcataaggct-ttttgtgaattaatgcac---ataaag-tacttagcatagggcctgacatgtaattatgtgctgaaccaatgAATACTGTCTATCAGTCGTATCATTATTA-----TTAT---------TCAGAGGCCACCACAGGGATCCTTGA-GGAAG--GATCTATTGGCTCATTAAGTGA-----------ACCAAAGACCTATGGCAACTATTTCTCTGAAGACTCCAGGCCCTTCTATTCCT-GGTACCCCCTAACTCTTCCTCTTAATCGTTT-GACTTAAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       129929 520 -   1709092 TCAAGGCAAATGATATCCGACATGCCT---CCCTCCCCTTCTCTC-ACATACATCAAGCCAGAGCTCTAGCTTAAGATGACATT--ATAATTATAATAAAAGTGAATGAGGTGTTCAATGTATATTCCAAACTGTTTCATCTT---A----TAATTACCAATG-TTTGCCT----TAA-----CCAATTTGGAA-GG-AAAAAAAAAAAAATCA--AAGCCAGGAC-TGTCAGAT--GGCGAACAGATCTACTACtctcctt-tgtgtacaacagggataaaag--taatactat--ctcataaggct-ttttgtgaattaacgcacataataaag-tacttagcatagggcctgacatgtaattatgtgctgaaccaatgAATA----CTATCAGTCGTATCATTATTA-----TTAC---------TCAGAGGCCACCACAGGGATCCTTGA-GGAAG--GATCCATTGGCTCATTAAGTGA-----------ACCAAAGACCTATGGCAACTATTTCTCTGAAGACTCCAGGCCCTTCTATTCCT-GGTACCCCCTAACTCTTCCTCTTAATCATCT-GACTTAAAAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17291885 514 - 121039945 TCAAGGCAAATGATATCTGACATGCCT---CCCTCCCCTTCTCTC-ACATACATCAAGCCAGAGCTCTATTTTAAGATGACATT--ATAATTACAATAAAAGTGAATGAGGTGTTCAATGTATATTCCAAACTGTTTCATCCT---A----TAATTACCAATG-TTTGCCT----TAA-----CCAATTTGGAA-GG----AAAAAAAAAATCA--AAGCCAGGAC-TGTCAGAT--GGCGAACAGATCTACTACACTCCTT-TGtgtacaacagggataaaag--taatactat--ctcataaggct-ttttgtgaattaatgcac---ataaag-tacttagcatagggcctggcatataattatgtgctaaaccaatgAATA----CTATCAGTCGCATCATTATTA-----TTAT---------TCAGAGGCCACCACAGGGATCCTTGA-GGAAG--GATCTATTGGCTCATTAAGTAA-----------ACCAAAGACCTATGGCAACTATTTCTCTGAAGACTCCAGGCCCTTCCATTCCT-GGCACCCCCTAACTCTTCCTCTTAATCATTT-GATTTAAAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60965870 515 + 169600520 TCAAGGCAAGTGATATCTGACATGCCT---CCCTCCCCTTCTCTC-AAGTACATCAAGCCAGAGCTCTAGTTTAAGATGAC-----ATAATTATAATAAAAGTGAATGAGGTGTTCAATGTATACTCCAAACTGTTTCATCTT---A----TAATTACCAATG-CTTGCCT----TAA-----TCAATTTAGAA-GG---AAAAAAAAAAATCA--AAGCTAGGAC-TGTCAGAT--GGGGAA-AGATCTACTTCtctcctc-tgtgtacaacagggataaacg--taacactat--ctcataaggct-ttttgtgaattaatgcac---acaaag-tacttagcgtagggcctggcatgtaattatgtgctgaaccaatgaatactgtctatcaGTAGTATCATTACTA-----TTAT---------TCAGAGGCCATGACAGGGATCCTTGA-GGAAG--GATCTCCTGGCTCATTAAGTGA-----------ACCAAAGAcctatggcaactatttctctgaagaccccaggcccttctattcct-ggtaccccctaactcttcctcctaatcattt-gacttaaaat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108492612 515 - 171882078 TCAAGGCAAATGATATCTGACATGCCT---CCCTCCCCTTCTCTC-AAGTACATCAAGCCAGAGCTCTAGTTTAAGATGAC-----ATAATTATAATAAAAGTGAATGAGGTGTTCAATGTATACTCCAAACTGTTTCATCTT---A----TAATTACCAATG-CTTGCCT----TAA-----TCAATTTAGAA-GG---AAAAAAAAAAATCA--AAGCTAGGAC-TGTCAGAT--GGGGAA-AGATCTACTACtctcctt-tgtgtacaacagggataaacg--taacactat--ctcataaggct-ttttgtgaattaatgcac---acaaag-tacttagcgtagggcctggcatgtaattatgtgctgaaccaatgaatactgtctatcaGTAGTATCATTACTA-----TTAT---------TCAGAGGCCATGACAGGGATCCTTGA-GGAAG--GATCTCCTGGCTCATTAAGTGA-----------ACCAAAGACCTATGGCAACTATTTCTCTGAAGACTCCAGGCCCTTCTATTCAT-GGTACCCCCTAACTCTTCCTCCTAATCATTT-GACTTAAAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       109117 515 -   2311642 tcaaggcaaatgatatctgacatgcct---cccTCCCCTTCTCTC-AAGTACATCAAGCCAGAGCTCTAGTTTAAGATGAC-----ATAATTATAATAAAAGTGAATGAGGTGTTCAATATATACTCCAAACTGTTTCATCTT---A----TAATTACCAATG-CTTGCCT----TAA-----TCAATTTAGAA-GG---AAAAAAAAAAATCA--AAGCTAGGAC-TGTCAGAT--GGGGAA-AGATCTACTACtctcctt-tgtgtacaatagggataaacg--taacactat--ctcataaggct-ttttgtgaattaatgcac---acaaag-tacttagcgtagggcctggcatgtaattatgtgctgaaccaatgaatactgtctatcaGTAGTATCATTACTA-----TTAT---------TCAGAAGCCATGACAGGGATCCTTGA-GGAAG--GATCTCCTGGCTCATTAAGTGA-----------ACCAAAGACCTATGGCAACTATTTCTCTGAAGACTCCAGGCCCTTCTATTCCT-GGTACCCCCTAACTCTTCCTCCTAATCATTT-GACTTAAAAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       101185 518 -   1987038 TCAAGGCAAATGATATCTCACATGCCT---CCCTCCCCTTCTCTC-AAGTACATCAAGCCAGAGCTCTAGTTTAAGATGAC-----ATAATTATAATAAAAGTGAATGAGGTGTTCAATGTATACTCCAAACTGTTTCATCTT---A----TAATTACCAATG-CTTGCCT----TAA-----CCAATTTAGAA-GGAAAAAAAAAAAAAATCA--AAGCTAGGAC-TGTCAGAT--GGGGAA-AGATCTACTagtctcctt-tgtgtacaacagggataaacg--taacactat--ctcataaggct-ttttgtgaattaatgcac---acaaag-tacttagcgtagggcctggcatgtaattatgtgctgaaccaatgaatactgtctatcaGTAGTATCATTACTA-----TTAT---------TCAGAGGCCATGACAGGGATCCTTGA-GGAAG--GATCTCCTGGCTCATTAAGTGA-----------ACCAAAGACCTATGGCAACTATTTCTCTGAAGACTCCAGGCCCTTCTATTCCT-GGTACCCCCTAACTCTTCCTCCTAATCATTT-GACTTAAAAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21182705 516 -  24206276 TCAAGGCAAATGATATCTGACATGCCT---CCCTCCCCTTTTCTC-AAGTACATCAAGCCAGAGCTCTAGTTTAAGATGAC-----ATAATTATAATAAAAGTGAATGAGGTGTTCAATGTATACTCCAAACTGTTTCATCTT---A----TAATTACCAATG-CTTGCCT----TAA-----CCAATTTAGAA-GG--AAAAAAAAAAAACCA--AAGCTAGGAC-TGTCAGAT--GGGGAA-AGATCTACTACtctcctt-tgtgtacaacagggataaaag--taacactat--ctcaaaaggct-ttttatgaattaatgcac---acaaag-tacttagcgtagggcctggcatgtaattatgtgctgaaacaatgaatactgtctatcaGTAGTATCATTACTA-----TTAT---------TCAGAGGCCATGACAGGGATCCTTGA-GGAAG--GATCTCCTGGCTCATTAAGTGA-----------ATCAAAGACCTATGGCAACTATTTCTCTGAAGACTCCAGGCCCTTCTATTCCT-GGTATCCCCTAACTCTTCCTCCTAATCATTT-GACTTAAAAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       124485 518 -   1397330 TCAAGGCAAATGATATCTCACATGCCTCCCCCCTCCCCTTCTCTC-AAGTACATCAAGCCAGAGCTCTAGTTTAAGATGAC-----ATAATTATAATAAAAGTGAATGAGGTGTTCAATGTATACTCCAAACTGTTTCATCTT---A----TAATTACCAATG-CTTGCCT----TAA-----CCAATTTAGAA-GG---AAAAAAAAAAATCA--AAGCTAGGAC-TGTCAGAT--GGGGAA-AGATCTACTagtctcctt-tgtgtacaacagggataaacg--taacactat--ctcataaggct-ttttgtgaattaatgcac---acaaag-tacttagcgtagggcctggcatgtaattatgtgctgaaccaatgaatactgtctatcaGTAGTATCATTACTA-----TTAT---------TCAGAGGCCATGACAGGGATCCTTGA-GGAAG--GATCTCCTGGCTCATTAAGTGA-----------ACCAAAGACCTATGGCAACTATTTCTCTGAAGACTCCAGGCTCTTCTATTCCT-GGTACCCCCTAACTCTTCCTCCTAATCATTT-GACTTAAAAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       122950 511 -   1784207 TCAAAGCAAATGATATCTGACATGCCT---CCCTCCTCTTCTCTC-AAGTACATCAAGCCAGAGCTCTAGTTTAAGATGAC--------ATTATAATAAAAGTGAATGAGGTGTTCAATGTATACTCCAAACTGTTTCATCTT---A----TAATTACCAATG-CTTGTCT----TAA-----CCAATTTAGAA-GG----AAAAAAAAAATTA--AAGCTAGGAC-TGTCAGAT--GGGGAA-AGATCTACTACtctcctt-tgtgtacaataggaataaaag--taacactat--ctcataaggct-ttttgtgaattaacgcac---acaaag-tacttagcatagggcctggcatgtaattatgtgctgaaacaatgaatactgtctatcaGTAGTATCATTATTA-----TTAT---------TCAGATGCCATGACAGGGATCCTTGA-GGAAG--GATCTCCTGGCTCATTAAGTGA-----------ACCAAAGACCTATGGCAACTATTTCTCTGAAGACTCCAGGCCCTTCTATTCCT-GGTACCCCCTAACTCTTCCTCCTAATCATTT-GACTTAAAAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22329558 517 + 158406734 TCAAGGCAAATGATATCTGACATGCCT---CTCTCCCCTTCTCTC-ACGTACATCAAGCCAGAGCTCTAGTTTAAGATGACTTT--ATAATTAGAATAAAAGTGAATGAGGTATTCAACGTATACTCCAAACTGTATGATCTT---A----TAACTACAAATG-TTTGCTT----TAA-----CAAACTCAGAA-GG---AAAAAAAAAAATCA--AAACCAGGAC-TGTCAGAT--GGGGAACCGATCTACTACTCTTATT-TGtgtacaataggaataaaag--taatactat--ctcataaggct-ttttgtgaattaatgcac---ataaagttacttagcataggtcctggcatataattatatgctgaaccaatgAATA----CTATCAGAAGTATCATTATTG-----TTATAGCA---GGTCAGAAGCCACCACAGGGATCCCCGA-GGAAG--GATCTATTGGCTCACTAAGTGA-----------ACCGAAGACCTATGGCAACTATTTCTCTGAAGATTCCAGAA-CTTCTATTCCT-GGTACCCCATAA--CTTCC---TAATCATTTGGACTTAAAAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50563779 521 +  54856640 TCAAGGCAAATGATATCTGACATGCCT---CTCTCCCCTTCTCTC-ACGTACATCAAGCCAGAGCTCTAGTTTAAGATGACTTT--ATAATTAGAATAAAAGTGAATGAGGTATTCAATGTATACTCCAAACTGTATGATCTT---G----TAACTGCCAATG-TTTGCCT----TAA-----CTAACTTAGAAGGG---AAAAAAAAAAATCA--AAACCAAGACTTGTCAGAT--GGGGAACAGATCTACTACtctcctt-tgtgtacaacaggaataaaag--taacactat--ctcataaggct-ttttgtgaattaatacac---ataaagttacttagcataggtcccggcatataattatgtgctgaaccaatgAATA----CTATCAGAAGTATCATTATTA-----TTACAGCA---GGTCAGAGGCCCCCACAGGGATCCCCGA-GGAAG--GATCTACTGGCTCACTAAGTGA-----------ACCAAAGACCTATGGCAACTATTTCTCTGAAGACTCCAGAA-CTTCTATTCCT-GGTATCCCATAACTCTTCC---TAATCATTTGGACTTAAAAT
i saiBol1.JH378108          C 0 I 305
s cebCap1.NW_016107610v1       714503 514 -   2910086 TCAAGGCAAATGGTATCTGACATGCCT---CTCTCCCCTTCTCTC-ACGCACATCAAGCCAGAGCTCTAGTTTAAGATGACTTT--ATAATTAG---AAAAGTGAATGAGGTATTCAATGTATACTCCAAACTGTATGATCTC---A----TAACTACCAATG-TTTGCCT----TAA-----CCAACTTAGAA--G---GAAAATAAAAATCA--AAACCAGGAC-TGTCAGAT--GAGGAACAGATCTACTACt-tcctt-tgtgtacaacaggaataaaag--tagtaccat--cttataagact-ttttgtgaattaatgcac---ataaagttacttagcataggtcccggcatataattatgtgctgaaccaatgAATA----CTATCAGAAGTATCATTATTG-----TTATAGCA---GGTCAGAGGCCACCACAGGGATCCCTGA-GGAAG--GATCTATTTGCTCACTAAGTGA-----------ACCGAAGACCTACGGCAACGATTTCTCTGAAGACTCCAGAA-CTTCTATTCCT-GGTACCCCATAACTCTTCC---TAATCATTTGGACTTAAAAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40728598 517 +  42888418 TCAAGGCAAATGATTTCCGACATGCCT---CTCTCCCCTTCTCTC-ACGTACATCAAGCCAGAGCTCTAG-TTAAGATGACTTT--ATAATTAGAATAAAAGTGAATGAGGTATTCAATGTATACTCCAAACTGTATGATCTT---A----TAACTACCAATG-TTTGCCT----TAA-----CCAGCTTAGAA-GG---AAAAAAAAAAATCA--AAACCAGGAC-TGTCAGAT--GGGGAACAGATCTACTACtctcctt-tgtgtacaacaggaataaaag--taatactat--ctcataaggct-ttttgtgaattaatgcac---acaaagttacttagcataggtcctggcatataattatgtgctgaaccaatgAATA----CTATCAGAAGTACCATTACTG-----TTATAGCA---GGTCAGAGGCCACCACAGGGATCCCTGA-GGAAA--GATCTACTGGCTCACTAAGTGA-----------ACCGAAGACCTACGGCAACTATTTCTCT-AAGACTCCAGAA-CTTCTATTCCT-GGTACCCCATAACTCTTCC---TAATCATTTGGACTTAAAAT
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81438548 506 + 145441459 ACTGGACAAATGTTACCTGGCATGCCT---TCCTC--CTTCTCTT-ACATAC-CAAAATTAGAGATCTTGTTTAAGGTGACTGT--GTAATTGGAATAAAAATAAGCAAAGCATTCAATTTACACCTCAAGTAGTTTAACTTCCCAG----TAAGTAGCAATG-TTTGCCG----TGAATGACCACACTTGGGG-GT----------GGGGTTAGTAAACCAGCAC-TGTTAGAT--GAGAAC-AGTCCTACCACTTTTCTTATATGTCCACTACACATAAAAGTATAATACTAT--GACATGTAGGG-GGGTCtgaattaatacac---atgtag-ttcttaccacagtgcgtggcacctaattatgtgctgagcaaattaatg----ctatcaGTACTACTATTATTACACCGTGAG---------TCAGA-GCAATTACAAGAATCTTTGATGAAAG--GATTTATGTGCTCATTAAATGAGAAAAA-ATATATTTAAAAGCTAATGCAACTATTTT----ATGATCCCAGGCCCTTCTCTT-----------------------TCCTAATCATTT-GACTTTACAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54483139 505 +  91889043 TCAAGGCAAATGCTGTCTGGAATGCCT---CCCTCC----CTCTC-AGGTACACCAATCCAGTTATCTGG------AAGACTCTGGGTAATTAGAACTTAAGGAAATGGAGCATTCGATTAACACCCCAAACTGCTTAATCAC---ATCACTAAGTACCAATG-----------------------GTTTGGAA-GG-----GGGGGGGGGTCA--AAACAAGCAA-CTTCGGGGGAGGGGAGTAGATCTACCACCttccttatgtacaaaacagggataaaagt-taatactatgcctcagatggct-ctttgtgaat----acac---ataaca-tgcttggcacagtacctggcacatgatgacatgctaaacagacaaatgtggactaGCAGTAGTATCATTACTA-----GTACACCAATGGGTCAGAGGCCACCACAAGAGTCCCTGA-AAACA--AGACTATTTGCTCATTAAAGGA--GAAA-ATGTACTGAGGACACAAGCCAATTATTTCTTTGAAGACCCCAGACCCTTCCATGCCT------------AATTTTCC---TAATCATTT-CATTTAGAAA
i canFam3.chr3              I 130 C 0
s dasNov3.JH570731            1935214 529 +   3943991 TCAAGTCAGATGGTATTTGGTGTGTTT---CCCTTCCCTTCTCTCTTAGTACACCAAATCAAAGATACAGTTTAAGATACC-CT--GTAATCAGAATAAAAACAAATGTGGTGCTCAATTTATACCCCCAACTGATTAATCGT---ATCAGTAAGTACCAATACTTTGCCTTGAGTAA-----TCAATTTTAAA-AA-------------ATCA--AAGCCAGTGA-TGCCAGAT--GGAGAAAAGACCCAtcactttccttatgtataaaatgtggacaagag--taatggtat--ctcgtaaggctgttttgtgaat----acag---ataaag-tgcttaacacagtgcctggcacgtaattataggcggaaccaatgaacgttgcctatcattAGTATGATTATTA-----CAAC---AAAGAGTCAAAAATTATCACAGGGATCCTTGA-GGAAAACAATCGATTTCCTCATTAAATGA--GAAATATTTACTGCAAATCTAAGGCAACTGTTCCTTTGAGTCTTCC-----CTTCTGTGCCTCAGAACCCAGTAACTCTTCCTCATAATCACAT-GATTTTAAAA
i dasNov3.JH570731          C 0 C 0
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=656695.000000
s hg38.chr15_KI270850v1_alt    420874 59 +    430880 GCTTAATTAAAA-GGCAAGAGATATGATTCAAATAG----ACCTAAGGGCTGAATC---CACTAcag
s panTro5.chr15              63573348 59 +  83230942 CCTTAATTAAAA-GGCAAGAGATATGATTCAAATAG----ACCTAAGGGCTGAATC---CACTAcag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80530272 59 +  99763055 CCTTAATTAAAA-GGCAAGAGATATGATTCAAATAG----ACCTAAGGGCTGAATC---CACTAcag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       130449 59 -   1709092 GCTTAATTAAAA-GGCAAGAGATATGATTCAAATAG----ACCTAAGGGCTGAATC---CACTAcag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17292399 59 - 121039945 GCTTAATTAAAA-GACAAGAGATATGATTCAAATAG----ACCTAAGGGCTGAATC---CACTAcag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60966385 59 + 169600520 gcttaattaaaA-GACAAGAGATATGATTCAAATAG----ACCTAAGGGCTGAATC---CACTAcag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108493127 59 - 171882078 GCTTAATTAAAA-GACAAGAGATATGATTCAAATAG----ACCTAAGGGCTGAATC---CACTAcag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       109632 59 -   2311642 GCTTAATTAAAA-GACAAGAGATATGATTCAAATAG----ACCTAAGGGCTGAATC---CACTAcag
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       101703 59 -   1987038 GCTTAATTAAAA-GACAAGAGATATGATTCAAATAG----ACCTAAGGGCTGAATC---CACTAcag
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21183221 59 -  24206276 GCTTAATTAAAA-GACAAGAGATATGATTCCAATAG----ACCTAAGGGCTGAATC---CACTAcag
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       125003 59 -   1397330 GCTTAATTAAAA-GACAAGAGATATGATTCAAATAG----ACCTAAGGGCTGAATC---CACTAcag
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       123461 57 -   1784207 GCTTAATTAAAA-GAC--GAGATATGATTCAAATAG----ACCTAAGGGCTGAATC---CACTAcag
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22330075 61 + 158406734 GCTTAATTAAAA-GACAACA--TACGATCCAAATAGACCTACCTAAGGGCTGAATC---CACTAcag
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50564605 63 +  54856640 GCTTAATTAAAA-GACAACAGGTATGATTCAAACAGACCTACCTAAGGGATGAATC---CACTAcag
i saiBol1.JH378108          I 305 C 0
s cebCap1.NW_016107610v1       715017 62 -   2910086 GCTTAATTAAAA-GACAACAGATATGATTTAAATAGACCTACCTAAGGGCTGAATC---CACTACA-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40729115 63 +  42888418 GCTTAATTAAAA-GACAACAGATATGATTCAAATAGACCTACCTAAGAGCTGAATC---CACTAcag
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81439054 57 + 145441459 GCTTAATTAAAA-TACTTAAGATATCATACAACT------ATCTAAAACCTTAATC---TATCATAG
i mm10.chr7                 C 0 I 5
s canFam3.chr3               54483644 66 +  91889043 GCTTAATTAAAAGGACTAAAGATTGGATATAAATTGAACTGCCTAAAATGTGTACCTAACACCACA-
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1935743 63 +   3943991 GGTTAATAAAAA-GACTAAAGACATTATACAAAAAGAACTGAATAAAGCCTAAACC---TACTGTAG
i dasNov3.JH570731          C 0 I 3
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=73880.000000
s hg38.chr15_KI270850v1_alt    420933 6 +    430880 gttcag
s panTro5.chr15              63573407 6 +  83230942 gttcag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80530331 6 +  99763055 gttcag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       130508 6 -   1709092 gttcag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17292458 6 - 121039945 gttcag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60966444 6 + 169600520 gttcag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108493186 6 - 171882078 gttcag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       109691 6 -   2311642 gttcag
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       101762 6 -   1987038 gttcag
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21183280 6 -  24206276 gttcag
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       125062 6 -   1397330 gttcag
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       123518 6 -   1784207 gttcag
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22330136 6 + 158406734 gttcgg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50564668 6 +  54856640 gttcag
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       715079 6 -   2910086 gttcag
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40729178 6 +  42888418 gttcag
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54483710 6 +  91889043 ATTCAG
i canFam3.chr3              C 0 C 0
e mm10.chr7                  81439111 5 + 145441459 I
e dasNov3.JH570731            1935806 3 +   3943991 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=413264.000000
s hg38.chr15_KI270850v1_alt    420939 63 +    430880 tatctctcatcagaaatgctgagatgaccaagaagtgtttcaga----------ttt----ggattttttttttttt
s panTro5.chr15              63573413 61 +  83230942 tatccctcatcagaaatgctgagatgacaaagaagtgtttcaga----------ttt----gga--ttttttttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80530337 62 +  99763055 tatccctcatcagaaatgctgagatgacaaagaagtgtttcaga----------ttt----gga-tttttttttttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       130514 60 -   1709092 catccctcatcagaaatgctgagatgaccaagaagtgtttcaga----------ttt----gga---tttttttttt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17292464 63 - 121039945 tatccctcatcagaaatgctgagatgaccaagaagtgtttcaga----------ttt----ggattttttttttttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60966450 62 + 169600520 tatccctcatctgaaat-ctgagatgaccaagaagtgtttcaga----------ttt----tgattttttttttttt
i rheMac8.chr7              C 0 I 1
s macFas5.chr7              108493192 62 - 171882078 tatccctcatctgaaat-ctgagatgaccaagaagtgtttcaga----------ttt----tttttttttttttttt
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011945v1       109697 72 -   2311642 tatccctcatctgaaat-ctgagatgaccaagaagtgtttcagattttgattttttt----tttttttttttttttt
i macNem1.NW_012011945v1    C 0 I 1
s cerAty1.NW_012002657v1       101768 67 -   1987038 tatccctcatctgaaat-ctgagatgaccaagaagtgtttcagattttg-----att----tttttttttttttttt
i cerAty1.NW_012002657v1    C 0 I 1
s chlSab2.chr29              21183286 65 -  24206276 tatccctcatctgaaat-ctgagatgaccaagaagtgtttcaga----------ttttga-tttttttttttttttt
i chlSab2.chr29             C 0 I 1
s manLeu1.NW_012106908v1       125068 66 -   1397330 tatccctcatctgaaat-ctgagatgaccaagaagtgtttcaga----------ttttgattttttttttttttttt
i manLeu1.NW_012106908v1    C 0 I 1
s colAng1.NW_012117110v1       123524 62 -   1784207 tatccctcatctgaaat-ctgagatgaccaagaagtgtttcaga----------ttt----tgattttttttttttt
i colAng1.NW_012117110v1    C 0 I 17
s calJac3.chr6               22330142 54 + 158406734 tattcctcatctgaaatgcttgggt--ccaagaagtgtttcaga----------ttt----tgatttttt-------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50564674 53 +  54856640 tattcctcatctgaaatgc-tgggt--ccaagaagtgtttcaga----------ttt----ggatttttt-------
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       715085 54 -   2910086 tattcctcatctgaaacgcctgggt--ccaagaagcgtttcaga----------ttt----ggatttttt-------
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40729184 54 +  42888418 tattccttatctgaaatgcttgggt--ccaagaagtgtttcaga----------ttt----ggatttttt-------
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81439111  5 + 145441459 I
e dasNov3.JH570731            1935806  3 +   3943991 I
e canFam3.chr3               54483716  0 +  91889043 C
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=137178.000000
s hg38.chr15_KI270850v1_alt    421002 18 +    430880 ggaagctggaacatttgc
s panTro5.chr15              63573474 18 +  83230942 ggaagctggaacatttgc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80530399 18 +  99763055 ggaagctggaacatttgc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       130574 18 -   1709092 ggaagctggaacatttgc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17292527 18 - 121039945 ggaagctggaacatttgc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60966513 18 + 169600520 ggattctggaatatctgc
i rheMac8.chr7              I 1 C 0
s macFas5.chr7              108493255 18 - 171882078 ggattctggaatatctgc
i macFas5.chr7              I 1 C 0
s macNem1.NW_012011945v1       109770 18 -   2311642 ggattctggaatatctgc
i macNem1.NW_012011945v1    I 1 C 0
s cerAty1.NW_012002657v1       101836 18 -   1987038 ggattctggaatatctgc
i cerAty1.NW_012002657v1    I 1 C 0
s chlSab2.chr29              21183352 18 -  24206276 ggattctggaatatctgc
i chlSab2.chr29             I 1 C 0
s manLeu1.NW_012106908v1       125135 18 -   1397330 tgattctggaatatctgc
i manLeu1.NW_012106908v1    I 1 C 0
s calJac3.chr6               22330196 18 + 158406734 ggattctggaaaatttgc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50564727 18 +  54856640 tgattctggaatatctgc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       715139 18 -   2910086 ggattctggaatatttgc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40729238 18 +  42888418 ggattctggaatatttgc
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81439111  5 + 145441459 I
e dasNov3.JH570731            1935806  3 +   3943991 I
e canFam3.chr3               54483716  0 +  91889043 C
e otoGar3.GL873530             718910 1898 -  36342412 I
e colAng1.NW_012117110v1       123586 17 -   1784207 I

a score=486129.000000
s hg38.chr15_KI270850v1_alt    421020 57 +    430880 atatacat----aatgacctatcttagggatagggcccaagtctaaacacagaattca-ttt
s panTro5.chr15              63573492 57 +  83230942 atatacat----aatgacctatcttagggatagggcccaagtctaaacacagaattca-ttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80530417 57 +  99763055 atatacat----aatgacctatcttagggatagggcccaagtctaaacacagaattca-ttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       130592 61 -   1709092 atatacataatgaatgacctatcttagggatagggcccaagtctaaacacagaattct-ttt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17292545 57 - 121039945 atatacat----aatgagctatcttagggatagggcccaagtctaaacacagaattca-ttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60966531 51 + 169600520 ------at----attgagctatcttggggatagggcccaaatctaaacacagaattca-ttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108493273 51 - 171882078 ------at----attgagctatcttggggatagggcccaaatctaaacacagaattca-ttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       109788 51 -   2311642 ------at----attgagctatcttggggatagggcccaaatctaaacacagaattca-ttt
i macNem1.NW_012011945v1    C 0 I 1
s cerAty1.NW_012002657v1       101854 51 -   1987038 ------at----attgagctatcttggggatagggcccaaatctaaacacagaattca-ttt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21183370 51 -  24206276 ------at----attgagctatcttggggatagggcccaaatctaaacacagaattca-ttt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       125153 51 -   1397330 ------at----attgagctatctcggggatagggcccaaatctaaacacagaattca-ttt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       123603 57 -   1784207 atctgcat----attgagctatcttggagatagggcccaaatctaaacacagaattca-ttt
i colAng1.NW_012117110v1    I 17 C 0
s calJac3.chr6               22330214 58 + 158406734 atatacgt----aacaagctatcttggggatagtgcccaagtctaaataaagaattcatttt
i calJac3.chr6              C 0 I 33
s saiBol1.JH378108           50564745 57 +  54856640 atatacat----aacaagctattttggggatagtgtccaagtctaaatacagaattca-ttt
i saiBol1.JH378108          C 0 I 33
s cebCap1.NW_016107610v1       715157 57 -   2910086 atatacat----aacaagctattttggggatagtgtccaagtctaaacacagaattca-ttt
i cebCap1.NW_016107610v1    C 0 I 581
s aotNan1.NW_018505940v1     40729256 57 +  42888418 atatacat----aacaagctatcttgggaatagtgcccaagtctaaacatagaattca-ttt
i aotNan1.NW_018505940v1    C 0 I 34
e mm10.chr7                  81439111  5 + 145441459 I
e dasNov3.JH570731            1935806  3 +   3943991 I
e canFam3.chr3               54483716  0 +  91889043 C
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=53638.000000
s hg38.chr15_KI270850v1_alt    421077 28 +    430880 -------------atttttttctc----tt---ttttttttttttttt
s panTro5.chr15              63573549 32 +  83230942 -------------atttttttctctttttt---ttttttttttttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80530474 28 +  99763055 -------------atttttTCttt----tt---ttttttttttttttt
i panPan2.chr15             C 0 M 736
s gorGor5.CYUI01015556v1       130653 32 -   1709092 -------------atttttctttttctctt---ttttttttttttttt
i gorGor5.CYUI01015556v1    C 0 I 2
s nomLeu3.chr6               17292602 25 - 121039945 -------------atttttctttt----tc---tctttttttttt---
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60966582 21 + 169600520 -------------tttt-----------tcttttttttttttttt---
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108493324 18 - 171882078 -------------tttt-----------tc---tttttttttttt---
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       109840 18 -   2311642 -------------tttt-----------tc---tttttttttttt---
i macNem1.NW_012011945v1    I 1 C 0
s cerAty1.NW_012002657v1       101905 18 -   1987038 -------------attt-----------tt---cttttttttttt---
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21183421 23 -  24206276 -------------attttttta------tt---tttatttttttt---
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       125204 18 -   1397330 -------------attt-----------tt---cttttttttttt---
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       123660 23 -   1784207 -------------atttttctt------tc---tttttttttttt---
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22330305 28 + 158406734 attttatacag----------ttg----tt---ttgtttttttct---
i calJac3.chr6              I 33 C 0
s saiBol1.JH378108           50564835 36 +  54856640 attttatacaG--GTTTTTTTCTT----TT---TTGTTTTTTTCT---
i saiBol1.JH378108          I 33 C 0
s aotNan1.NW_018505940v1     40729347 38 +  42888418 attttatacagttgtttttttgtt----tt---ttgtttttttct---
i aotNan1.NW_018505940v1    I 34 C 0
e mm10.chr7                  81439111  5 + 145441459 I
e dasNov3.JH570731            1935806  3 +   3943991 I
e canFam3.chr3               54483716  0 +  91889043 C
e cebCap1.NW_016107610v1       715214 581 -   2910086 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=2946094.000000
s hg38.chr15_KI270850v1_alt    421105 487 +    430880 gagacggagt--ctcgttctgtcg--------------------------------------------------cccaggctggagtgcaatggtgtgatctcggctcactgcaagctccgcctcccgggttcacaggattctctcgcctcagcctctggagtagctgggactacatacgcccgccaccacgcccggctca---tttttt-------tgtatttttagtagagatggggtttcaccacattagtcaggatggtcttgatctcctgacctcatg--atccgcccaccttggcctcccaaagtgctgggattacaggcgtgagccactgcgcccagccaaattcatttattttttatatatacttcatacacatagcctgaagttaattttatacaata-tttttagtaattctgtacatgaaattaaattttgactgtgttttaactgtcacccatcatgaattcaggtgtctaatttctacttgtg---acatactggtgttccaaaagtttcagattttggagcatttcagattAGGGCTGCTC
s panTro5.chr15              63573581 487 +  83230942 gagacggagt--ctcgttctgtcg--------------------------------------------------cccaggctggagtgcaatggtgtgatctcggctcactgcaagctccgcctcccgggttcacaggattctctcgcctcagcctctggagtagctaggactacatgcgcccgccaccacgcccggctaa---tttttt-------tgtatttttagtagagatggggtttcaccacgttagtcaggatggtcttgatctcctgacctcatg--atccgcccaccttggcctcccaaagtgctgggattacaggcgtgagccactgcgcccggccaaattcatttattttttatatatacttcatacacatagcctgaagttaattttatacaata-tttttagtaattctgtacatgaaattaaattttgactgtgttttaactgtcacccatcatgaattcaggtgtctaatttctacttgtg---acatactggtgttccaaaagtttcagattttggagcatttcagattAGGGCTGCTC
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       130687 484 -   1709092 gagacggagt--ctcgttctgtcg--------------------------------------------------cccaggctggagtgcaatggtgcgatctcggctcactgcaagctccgcctcccgggttcacaggattctctcgcctcagcctctggagtagctgggactacatgcgcccgccaccacgcccggctaa---tttttt-------tgta-ttttagtagagatggggtttcaccatgttagccaggatggtcttgatctcctgacctcatg--atccgcccaccttggcctcccaaagtgct-ggattacaggcgtgagccactgcgcccggccaaattcatttattttttatatatacttcatacacatagcctgaagttaattttatacaata-tttttagtaattctgtacatgaaattaaattttgactgtgttttaactgtcacccatcatg-attcaggtgtctaatttctacttgtg---acatactggtgttccaaaagtttcagattttggagcatttcagattAGGGCTGCTC
i gorGor5.CYUI01015556v1    I 2 C 0
s nomLeu3.chr6               17292627 488 - 121039945 gagacggagt--ctcgttctgtcg--------------------------------------------------cccaggctggaatgcagtggtgcgatctcggctcactgcaagctccgcctacccggttcacaggattctcccgcctcagcctcccgagtagctgggactacaggtgcccaccaccatgcccggctaa--ttttttt-------tatatttttagtagagatggggtttcatcatgttagccaggatggtcctgatctcctgacctcatg--atccgccgacctcgacctcccaaagtgctgggattacaggcgtgagccactgcgcccggccaaattcatttatttttggtatatacttcatacatacagcctgaagttaattttatacaata-tttttagtaattctgtacaggaaattaaattttgactgtgttttaactgtcacccatcatgaattcaggtgtctaatttctacttgtg---acatatcagtgttccaaaagtttcagattttggagcatttcagattAGGGCTGCTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60966603 471 + 169600520 gagatggagt--ctcgctctgtcac------------------------------------------------ccccaggctggagtgcagtggcacgatcttggctcaatgcaagctccacctcccgggttcacaccattctcccacc-cagcctcctgagtagctgggactacaggcgcccgccatcgtgcctggctaa---tttttt-------tgtgtttttagtagaaacggggtttcaccatgttagcc-ggatggtcttgatgtcctga--------------cccacttcagcctcccaaagtgctgggattacaggcgtgagctaccatgcctggccaaattcatttatttttcatatatatttcatacatatagcctgaagttaattttatacaata-tttttagtaattctgtacatgaaattaaatt----ctgtgttttaactgtcacccatcacgaattcaggtgtgttatttctacttgtg---acgtgtcggtgttccaaaagtttcagattttggaggatttcagattAGGGCTGCTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108493342 471 - 171882078 gagatggaat--ctcgctctgtcac------------------------------------------------ccccaggctggagtgcagtggcacaatcttggctcaatgcaagctctacctcccgggttcacaccattctcccacc-cagcctcctgagtagctgggactacaggcgcccgccatcatgcctggctaa---tttttt-------tgtgtttttagtagaaacggggtttcaccatgttagcc-ggatggtcttgatgtcctga--------------cccacttcagcctcccaaagtgctgggattacaggcgtgagctaccatgcctggccaaattcatttatttttcatatatatttcatacatatagcctgaagttaattttatacaata-tttttagtaattctgtacatgaaattaaatt----ctgtgttttaactgtcacccatcacgaattcaggtgtgttatttctacttgtg---acgtgtcgttgttccaaaagtttcagattttggaggatttcagattAGGGCTGCTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       109858 471 -   2311642 gagatggagt--ctcgctctgtcac------------------------------------------------ccccaggctggagtgcagtggcacgatcttggctcaacgcaagctctacctcccgggttcacaccattctcccacc-ccgcctcctgagtagctgggactacaggcgcccgccatcatgcctggctaa---tttttt-------tgtgattttagtagaaacggggtttcaccatgttagcc-ggattgtcttgatgtcctga--------------cccacttcagcctcccaaagtgctgggattacaggcgtgagctaccatgcctggccaaattcatttatttttcatatatatttcatacatatagcctgaagttaattttatacaata-tttttagtaattctgtacatgaaattaaatt----ctgtgttttaactgtcacccatcacgaattcaggtgtgttatttctacttgtg---atgcgtcggtgttccaaaagtttcagattttggaggatttcagattAGGGCTGCTC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       101923 471 -   1987038 gagatggagt--ctcgctctgtcac------------------------------------------------ccccaggctggagtgcagtggcacgatcttggctcaatgcaagctccacctcccgggttcacaccattctcccact-cagcctcctgagtagctgggactacaggcgcccgccatcatgcctggctaa---tttttt-------tgtgtttttagtagaaacggggtttcaccatgttagcc-ggatggtcttgatgtcctga--------------cccacttcagccccccaaagtgctgggattacaggcgtgagctaccatgcctggccaaattcatttatttttcatatatatttcatacatatagcctgaagttaattttatacaata-tttttagtaattctgtacatgaaattaaatt----ctgtgttttaactgtcacccatcacgaattcaggtgtgttatttctacttgtg---acgtgtcggtgttccaaaagtttcagattttggagcatttcagattAGGGCTGCTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21183444 471 -  24206276 gagatggagt--ctcgctctgtcac------------------------------------------------ccccaggctggagtgcagtggcacgatcttggctcaatgcaagctccacctcccgggttcacaccattctcccacc-cagcctcctgagtagctgggactacaggtgtccgccatcatgcctggctaa---tttttt-------ggtgtttttagtagaaacggggtttcaccatgttagcc-ggatggtcttgatgtcctga--------------cccatttcagcctcccaaagtgctgggattacaggcgtgagctaccatgcccggccaaattcatttatttttcatatatatttcatacatatagcctgaagttaattttatacaata-tttttagtaattctgtacatgaaattaaatt----ctgtgttttaactgtcacccatcacgaattcaggtgtgttatttctacttgtg---acgtgtcggtgttccaaaaatttcagattttggagcatttcagattAGGGCTGCTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       125222 471 -   1397330 gagatggagt--ctcgctctgtcac------------------------------------------------ccccaggctggagtgcagtggcacgatcttggctcaatgcaagctccacctcccgggttcacaccattctcccact-cagcctcctgagtagctgggactacaggcgcccgccatcatgcctggctaa---tttttt-------tgtgtttttagtagaaacggggtttcaccatgttagcc-ggatggtcttgatgtcctga--------------cccacttcagcctcccaaagtgctgggattacaggcgtgagctaccatgcctggccaaattcatttatttttcatatatatttcatacatatagcctgaagttaattttatacaata-tttttagaaattctgtacatgaaattaaatt----ctgtgttttaactgtcacccatcacgaattcaggtgtgttatttctacttgtg---acgtgtcggtgttccaaaagtttcagattttggagcatttcagattAGGGCTGCTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       123683 482 -   1784207 aagatggagt--ctcgctctgtca--------------------------------------------------cccaggctggagtgcagtggcatgatcttggctcaatgcaagctccacctcccgggttcacaccattctcccacc-cagcctcctgagtagctgggactacaggcacccgccaccacgcctggctaa---tttttt-------tgtgtttttagtagaaacagggtttcaccatgttagct-agatggtcttgatgtcctgacatcatg--atctgcccacttcagcctcccaaagtgctgggattacaggcgtgagctaccgtgcccagccaaattcatttatttttcatatatatttcatacatatagcctgaagttaattttatacaatattttttagtaattctgtacatgaaattaaact----ctgtgttttaactgtcacccatcatgaattcaggtgtgttatttctacttgtg---acatgtcggtgttccaaaagtttcagattttggagcatttcagattAGGGCTGCTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22330333 430 + 158406734 gagatggaac---------------------------------------------------------------gcccaggctggagtgcagtggcgcaatcttggctcactgcaacctccacctccctagttcaagtgattcccctgcctcagcctcctgagtagctgggattaccagcttgcaccaccatgcccagctaatttttttttttttttttgtatttttag---agacagggtttcaccatgttggccaggctggtctctaactcctgacctcaggcaatccgcctgcctcggcctcccaaagtgctgggattacaggaatgagccactgcacctggcc-----------------------------------------------aattttatatagta-tttttagtaattctgtacatgaaataaaa-----------gtttaactgtcacccatcaagaattcaggtgtgcaatttctacttgtgacaacatgatgctgctccaaaaatttcagattttggggcatttcagattAGGGCTGCTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50564871 498 +  54856640 GAGACGGAACGCCCTaatctgaaacgctccaaaatctgaaatttttggagcaccaccatgTTGGAGCACTCCAgcccaggctggagtacagtggcacaatcttggctcactgcaacctccacctccctagttcaagtgattcccctgcctcagcctcctgagtagctgggaatacaagctcgcaccaccatgcccagctaa---tttttttcgtgtgtgtatttttagtaaagacagggtttcaccatgttggccagactggtctctaactcctga---caagcaatctgcctgcctcagcctcccaaagtgctgagattacaggaatgagccaccgcacctggcc-----------------------------------------------aattttatataata-tttttagtaattctgtagatgaaattaaatcttgac--tgttttaactgtcacccatcaagaattcaggtgtgcagtttctac-tgtgacaacatggtggtgctccaaaaatttcagattttggggcatttcagattAGGGCTGCTC
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40729385 434 +  42888418 gagacggaat---------------------------------------------------------------gcccaggctggagtgcagcagcgcaatcttggctcactgcaacctccacctccctagttcaagtgattcctctgcctcagcctcctgagtagctgggattacaagctcgcaccaccatgcccagctaa---tttttttt-----tgtatttttagtagagatagggtttcaccatgttggccaggctgctctctaactcctgacctcaggcaatccgcctgcctcagtctcccaaagtgctgggattacaggaatgagccaccgcacctggcc-----------------------------------------------aattttatataata-tttttagtaattctgtacatgaaattaaattttgac--tgttttaactgtcacccatcaagaattcaggtgtgcagtttctacttgtaacaacatggtggtgctccaaacgtttcagattttggggcatttcagattAGGGCTGCTT
i aotNan1.NW_018505940v1    C 0 I 59
e mm10.chr7                  81439111   5 + 145441459 I
e dasNov3.JH570731            1935806   3 +   3943991 I
e canFam3.chr3               54483716   0 +  91889043 C
e cebCap1.NW_016107610v1       715214 581 -   2910086 I
e otoGar3.GL873530             718910 1898 -  36342412 I
e panPan2.chr15              80530502 736 +  99763055 M

a score=170624.000000
s hg38.chr15_KI270850v1_alt    421592 34 +    430880 -GACATGTGTAC-----------------------------------TGTGTATATTcaca---------cacac--acac
s panTro5.chr15              63574068 41 +  83230942 -GACATGTGTAC-----------------------------------TGTGTATATTcacacacgcac--cacac--acac
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       131171 41 -   1709092 -GACATGTGTAC-----------------------------------TGTGTATATTcacacacgcac--cacac--acac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17293115 41 - 121039945 -GACATGTGTAC-----------------------------------TGTGTATATTcacacacacac--cacac--acac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60967074 43 + 169600520 -GACATGTGTAT-----------------------------------TGTGTATATTTacacacacaccacacac--acac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108493813 41 - 171882078 -GACATGTGTAT-----------------------------------TGTGTATATTTacacacacac--cacac--acac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       110329 41 -   2311642 -GACATGTGTAT-----------------------------------TGTGTATATTTacacacacac--cacac--acac
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       102394 41 -   1987038 -GACATGTGTAT-----------------------------------TGTGTATATTTacatacacac--cacac--acac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21183915 41 -  24206276 -GACATGTGTAT-----------------------------------TGTGTATATTTacacacacac--cacac--acac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       125693 41 -   1397330 -GACATGTGTAT-----------------------------------TGTGTATATTTacacacacac--cacac--acac
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       124165 43 -   1784207 -GACATATGTAT-----------------------------------TGTGTATATTTacacacacac--cacacaaacac
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22330763 33 + 158406734 Gg---------------------------------------------tgtgtgtgtgtgtacacgtgcg-tgcat--gtgt
i calJac3.chr6              C 0 I 9
s saiBol1.JH378108           50565369 78 +  54856640 GAGTGTGTGTGTGTCAGAGAGAGAGAGAGAGAgtgtgtgtgtgtgtttgcgtgtgtgtgtacacatgca-tgcat--gcat
i saiBol1.JH378108          C 0 I 10
e aotNan1.NW_018505940v1     40729819 59 +  42888418 I
e mm10.chr7                  81439111  5 + 145441459 I
e dasNov3.JH570731            1935806  3 +   3943991 I
e canFam3.chr3               54483716  0 +  91889043 C
e cebCap1.NW_016107610v1       715214 581 -   2910086 I
e otoGar3.GL873530             718910 1898 -  36342412 I
e panPan2.chr15              80530502 736 +  99763055 M

a score=13031.000000
s hg38.chr15_KI270850v1_alt    421626 2 +    430880 ac
s panTro5.chr15              63574109 2 +  83230942 ac
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       131212 2 -   1709092 ac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17293156 2 - 121039945 ac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60967117 2 + 169600520 ac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108493854 2 - 171882078 ac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       110370 2 -   2311642 ac
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       102435 2 -   1987038 ac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21183956 2 -  24206276 ac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       125734 2 -   1397330 ac
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       124208 2 -   1784207 ac
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22330805 2 + 158406734 AT
i calJac3.chr6              I 9 C 0
s saiBol1.JH378108           50565457 2 +  54856640 AT
i saiBol1.JH378108          I 10 C 0
s aotNan1.NW_018505940v1     40729878 2 +  42888418 AT
i aotNan1.NW_018505940v1    I 59 C 0
e mm10.chr7                  81439111 5 + 145441459 I
e dasNov3.JH570731            1935806 3 +   3943991 I
e canFam3.chr3               54483716 0 +  91889043 C
e cebCap1.NW_016107610v1       715214 581 -   2910086 I
e otoGar3.GL873530             718910 1898 -  36342412 I
e panPan2.chr15              80530502 736 +  99763055 M

a score=1287036.000000
s hg38.chr15_KI270850v1_alt    421628 189 +    430880 acattttttaagagatggggtcttgttctgtcccctaggttg------gagcacagtgctgcaatcacagctcactgcagccttgatctcctgggctcaagcaatcttcctgcctcagcgtcccaagtagctggactacagacaggcgcca------ccatgcccagctaa---tttttttttttaac-ttt-tttttttcccctc
s panTro5.chr15              63574111 190 +  83230942 acattttttaagagatggggtcttgttctgtcccctaggttg------gagcacagtgctgcaatcacagctcactgcagccttgatctcctgggctcaagcaatcttcctgcctcagcctcccaagtagctggactacagacatgcgcca------ccatgcccagctaa---tttttttttttaactttt-tttttttcccctc
i panTro5.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       131214 189 -   1709092 acattttttaagagatggggtcttgttctgtcccctaggttg------gagcacagtgctgcaatcacagctcactgcagccttgatctcctgggctcaagcaatcttcctgcctcagcctcccaagtagttggactacagacatgcacca------ccatgcccagctaa----ttttttttttaactttt-tttttttcccctc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17293158 186 - 121039945 a----TTTTAAgagatggggtcttgttctgtcccc-aggttg------aagcacagtgctgcaatcacagctcactgcagccttgatctcctgggctcaagcaatcttcctgcctcagcctcccaagtagctggactatagacatgcgcca------ccatgcccagctaa--ttttttttttttaactttt-tttttttcccctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60967119 175 + 169600520 acattttttaagatgtggcgtcttggtctgtcccccaggttg------gagcacagggctgcaatcatagctcactgcagccttgaactccggggctcaagcaatcctcctgcctcagcctcccaagtagctggactacagacatgcgcca------ccatgcccagctat------------------ttt-ttttccacccctc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108493856 175 - 171882078 acattttttaagatgtggcgtcttggtctgtcccccaggttg------gagcacagggctgcaatcatagctcactgcagccttgaactccggggctcaagcaatcctcctgcctcagcctcccaagtagctggactacagacatgcgcca------ccatgcccagctat------------------ttt-ttttccacccctc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       110372 175 -   2311642 acattttttaagatgtggcgtcttggtctgtcccccaggttg------gagcacagggctgcaatcatagctcactgcagccttgaactccggggctcaagcaatcctcctgcctcagcctcccaagtagctggactacagacatgcgcca------ccatgcccagctat------------------ttt-ttttccacccctc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       102437 175 -   1987038 acattttttaagatgtggcgtcttggtctgtcccccaggttg------gagcacagggctgcaatcatagctcactgcagccttgaactccggggctcaagcaatcctcctgcctcagcctcgcaagtagctggactacagacatgcgcca------ccatgcccagctat------------------ttt-ttttccacccctc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21183958 175 -  24206276 acaTTTTTAAATATGTGGCgtcttggtctgtcccccaggttg------gagcacagggctgcaatcatagctcactgcagccttgaactccggggctcaagcaatcctcctgccccagcctcccaagtagctggactacagacatacgcca------ccatgcccagctat------------------ttt-ttttccacccctc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       125736 175 -   1397330 acattttttaagatgtggcatcttggtctgtcccccaggttg------gagcacagggctgcaatcatagctcactgcagccttgaactccggggctcaagcaatcctcctgcctcagcctcccaagtagctggactacagacatgcgcca------ccatgcccagctat------------------ttt-ttttccacccctc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       124210 173 -   1784207 acattttttaagagacagcatcttggtctgtcccccaggttg------gagcacagtgctgcaatcatagctcactgcagccttgaactccggggctcgagcaatcctcctgcctcagcctcccaagtagctggactacagacatgtgcca------ccatgcccagcta--------------------tt-ttttccccccctc
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22330807 195 + 158406734 ACATTCTTTAAgagatagggtcttgctcgacccccccccccccccccgcagcacagtgg-acaatcatagctcactgcagccttgaactcctgggctcaagcaatccttctgcctcagcctcccaagtagatg----acagacatgtgccaccatccccatgcccagctaa-----ttttttttaaac-tgtatttttcccccctc
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50565459 187 +  54856640 ACATTCTTGAAgagatggggtcttgctctgcccccaacccc-------cagcacagtggtacaatcatagctcactacagccttgaactcctgggctcaagcaatccttctgcctcagcctctcaagtagttg----acagacatgtgccaccattgccatgcccagttaa----ttttttttttaac-t---ttttttccccctc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       715795 192 -   2910086 ACATTCTTTAAgagatggggtcttgctctgccccccaatccc------taggacagtggtacaatcatagctcactgcagcctcgaactcctgggctcaagcaatccctctgcctcagcctcccaagtagctg----acagacatgtgccaccatcgccatgcccagctaattttttttttttttaac-t---tttttttccccct
i cebCap1.NW_016107610v1    I 581 C 0
s aotNan1.NW_018505940v1     40729880 191 +  42888418 ACATTCTTTAAgagatggggtcttgctctgccccccaccccc------cagcacagtggtacaatcatggctcactgcagctttgaactcctgggctcaaacaatccttctgcctcagtctcccaagtagctg----acagacatgtgccaccatcaccatgcccagctaa---tattttttttttac-ttt-ttttttccccctc
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81439111   5 + 145441459 I
e dasNov3.JH570731            1935806   3 +   3943991 I
e canFam3.chr3               54483716   0 +  91889043 C
e otoGar3.GL873530             718910 1898 -  36342412 I
e panPan2.chr15              80530502 736 +  99763055 M

a score=1202695.000000
s hg38.chr15_KI270850v1_alt    421817 118 +    430880 agagaaaaggtctcgctatgttgtccaggctggtcttgaattcccgggctcaagcgctgctcctgcctcagcctctcaaagtgctgggattacaggcatgagctaccacatctagccA
s panTro5.chr15              63574301 118 +  83230942 agagaaaaggtctcgctatgttgcccaggctgatcttgaattcccgggctcaagcgctgctcctgcctcagcctctcaaagtgctgggattacaggcatgagctaccacatctagccA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80531239 118 +  99763055 agagaaaaggtctcgctatgttgcccaggctgatcttgaattcccgggctcaagcgctgctcctgcctcagcctctcaaagtgctgggattacaggcatgagctaccacatctagccA
i panPan2.chr15             M 736 C 0
s gorGor5.CYUI01015556v1       131403 118 -   1709092 agagaaaaggtctcgctatgttgcccaggctggtcttgaattcccgggctcaagcgctgctcctgcctcagcctctcaaagtgctgggattacaggcatgagctaccacatctagccA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17293344 118 - 121039945 agagaaaaggtctcgctatgttgcccaggctggtcttgaattcccaggctcaagcgctgctcctgcttcagcctctcaaagtgctgggattacaggcatgagctaccacatctagccA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60967294 118 + 169600520 agaaaaaaggtctcgctatgttgcccaggctggtcttgaattcccgggctcaagtgttgctcctgcctcagcctctcaaagtgctgggattacaggcatgagctaccacacctagccA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108494031 118 - 171882078 agaaaaaaggtctcgctatgttgcccaggctggtcttgaattcccgggctcaagtgttgctcctgcctcagcctctcaaagtgctgggattacaggcatgagctaccacacctagccA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       110547 118 -   2311642 agaaaaaaggtcttgctatgttgcccaggctggtcttgaattcccaggctcaagtgttgctcctgcctcagcctctcaaagtgctgggattacaggcatgagctaccacacctagccA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       102612 118 -   1987038 agaaaaaaggtctcgctatgttgcccaggctggtcttgaattcccgggctcaaatgttgctcctgcctcagcctctcaaagtgctgggattacaggcatgagctaccacacctagccA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21184133 118 -  24206276 agagaaaaggtctcgctatgttgcccaggctggtcttgaattcccgggctcaagcattgctcctgcctcagcctctcaaagtgctgggattacaggcatgagctaccacacctagccA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       125911 118 -   1397330 agaaaaaaggtctcgctatgttgcccaggctggtcttgaattcccgggctcaaatgttgctcctgcctcagcctctcaaagtgctgggattacaggcatgagctaccacacctagccA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       124383 118 -   1784207 agagaaaaggtcttgctatgttgcccaggctggtcttgaattcccgggctcaagtgttgctcctgcctcagcctctccaagtgctgggattacaggcatgagctaccacacctagccA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22331002 117 + 158406734 agagaataggtcttgcaatgttgcccaggctggtcttgaattgctgggctcaatcattactcct-cctcagcctctcaaagtgctgggattacaggcataagccaccatgcctagccA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50565646 118 +  54856640 aaagaagaggtcttgctatgtttcccaggctggtcttgaattcctgggctcaagcattactcttgcctcagcctcccaaagtgctgggattacaggcataagccaccatgcttagccA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       715987 114 -   2910086 ----aagaggtcttgctatgttgcccaggctggtcttgaattcctggactcaagcgttactcctgtctcagcctctcagagtgctgggattacaggcataagccaccatgcctagccA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40730071 118 +  42888418 agagaagaggtcttgctatgttgcccaagctggtcttgaatttctgggctcaagtgctactcctgcctcagcctttcaaagtgctgggattacaggcataagccaccaagcctggccA
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81439111   5 + 145441459 I
e dasNov3.JH570731            1935806   3 +   3943991 I
e canFam3.chr3               54483716   0 +  91889043 C
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=24752.000000
s hg38.chr15_KI270850v1_alt    421935 2 +    430880 AT
s panTro5.chr15              63574419 2 +  83230942 AT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80531357 2 +  99763055 AT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       131521 2 -   1709092 AT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17293462 2 - 121039945 AT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60967412 2 + 169600520 AT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108494149 2 - 171882078 AT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       110665 2 -   2311642 AT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       102730 2 -   1987038 AT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21184251 2 -  24206276 AT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       126029 2 -   1397330 AT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       124501 2 -   1784207 AT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22331119 2 + 158406734 AT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50565764 2 +  54856640 AT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       716101 2 -   2910086 AT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40730189 2 +  42888418 AT
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1935809 2 +   3943991 AT
i dasNov3.JH570731          I 3 C 0
e mm10.chr7                  81439111 5 + 145441459 I
e canFam3.chr3               54483716 0 +  91889043 C
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=26996.000000
s hg38.chr15_KI270850v1_alt    421937 2 +    430880 AC
s panTro5.chr15              63574421 2 +  83230942 AC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80531359 2 +  99763055 AC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       131523 2 -   1709092 AC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17293464 2 - 121039945 AC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60967414 2 + 169600520 AC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108494151 2 - 171882078 AC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       110667 2 -   2311642 AC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       102732 2 -   1987038 AC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21184253 2 -  24206276 AC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       126031 2 -   1397330 AC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       124503 2 -   1784207 AC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22331121 2 + 158406734 AC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50565766 2 +  54856640 AC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       716103 2 -   2910086 AC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40730191 2 +  42888418 AC
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81439116 2 + 145441459 AC
i mm10.chr7                 I 5 C 0
s dasNov3.JH570731            1935811 2 +   3943991 AT
i dasNov3.JH570731          C 0 C 0
e canFam3.chr3               54483716 0 +  91889043 C
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=393794.000000
s hg38.chr15_KI270850v1_alt    421939 35 +    430880 TGATCCTTTTAAACCGTCCA-GTTATATGAATTCAT
s panTro5.chr15              63574423 35 +  83230942 TGATCCTTTTAAACCGTCCA-GTTATATGAATTCat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80531361 35 +  99763055 TGATCCTTTTAAACCGTCCA-GTTATATGAATTCat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       131525 35 -   1709092 TGATCCTTTTAAACCGTCCA-GTTATATGAATTtat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17293466 35 - 121039945 TGATCCTTTTAAACTGTCCA-GTTAAATTAATTCAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60967416 35 + 169600520 TGATCCTTTTAAATTATCCA-GTTAAATGAATTCAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108494153 35 - 171882078 TGATCCTTTTAAATTATCCA-GTTAAATGAATTCAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       110669 35 -   2311642 TGATCCTTTTAAATTATCCA-GTTAAATGAATTCAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       102734 33 -   1987038 TGATCCTTTTAAATTAT--A-GTTAAATGAATTCAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21184255 35 -  24206276 TGATCCTTTTAAATTATCTA-GTTAAATGAAGTCAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       126033 35 -   1397330 TGATCCTTTTAAATTATCCA-GTTAAATGAATTCAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       124505 35 -   1784207 TGATCCTTTTAAATTGTCCA-GTTAAATGAATTCAC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22331123 36 + 158406734 TGATCCTTTTAAACTGTCTAGGTTAAATGAATTCAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50565768 36 +  54856640 TGATCCTTTTAAACTGTCTAGGTTAAATGAATTCAT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       716105 36 -   2910086 TGATCCTTTTAAACTGCCTAGGTTAAATGAATTCAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40730193 36 +  42888418 TGATCCTTTTAAACTGTCTAGGTTAAATGAATTCAT
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81439118 35 + 145441459 TGATTTTTTTAAACACACCA-ATTAAAAGAATTCAT
i mm10.chr7                 C 0 I 220
s canFam3.chr3               54483716 33 +  91889043 TGATCC-TTCAAATTCTCCA-GCTAAATGAATTCA-
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1935813 35 +   3943991 TGGTTCTTTTAAATTCTACA-GTTAAATGAGTTTGT
i dasNov3.JH570731          C 0 C 0
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=669938.000000
s hg38.chr15_KI270850v1_alt    421974 61 +    430880 AGTTCCTCATTTTCAAAACAGAAACCTACTATCCAC-CCCATACTCACAGACCCATTTACTT
s panTro5.chr15              63574458 61 +  83230942 agttcctcattttcaaaacagaaacctactatccac-cccatactcacagacccatttactt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80531396 61 +  99763055 agttcctcattttcaaaacagaaacctactatccac-cccatactcacagacccatttactt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       131560 61 -   1709092 agttcctcattttcaaaacagaaacctactatccac-cccatactcacagacccatttactt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17293501 61 - 121039945 AGTTCCTCATTTTCAAAACAGAAACCTACTATCCAC-CCCATACTCACAGACCCATTTACTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60967451 60 + 169600520 AGTTCCTCA-TTTCAAAACAGAAACCTACTATCCAC-CCCATACTCACAGACCCATTTATTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108494188 60 - 171882078 AGTTCCTCA-TTTCAAAACAGAAACCTACTATCCAC-CCCATACTCACAGACCCATTTACTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       110704 60 -   2311642 AGTTCCTCA-TTTCAAAACAGAAACCTACTATCCAC-CCCATACTCACAGACCCATTTACTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       102767 60 -   1987038 AGTTCCTCA-TTTCAAAACAGAAACCTACTATCCAC-CCCATACTCACAGACCCATTTACTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21184290 60 -  24206276 AGTTCCTCA-TTTCAAAACAGAAACCTACTATCCAC-CCCATACTCACAGACCCATTTACTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       126068 60 -   1397330 AGTTCCTCA-TTTCAAAACAGAAACCTACTATCCAC-CCCATACTCACAGACCCATTTACTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       124540 60 -   1784207 AGTTCCTCA-TTTCAAAACAGAAACCTACTATCCAC-CCCACACTCACAGACCCATTTACTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22331159 61 + 158406734 AGTTGCTCATTTTCAAAACAGACACCAACTATCCAC-CCCATActcacagacccatttaatt
i calJac3.chr6              C 0 I 34
s saiBol1.JH378108           50565804 60 +  54856640 AGTTGCTCATTTTCAAAACAAACACC-ACTACCCAC-CCCATACTCACAGACCCATTTACTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       716141 61 -   2910086 AGTTGctcattttcaaaacagacaccagctatccac-cccatactcacagacccatttactt
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40730229 61 +  42888418 AGTTGCTCATTTTCAAAACAGACACCAACTATCCAC-CCCATACTCACAGACCCATTTATTT
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54483749 46 +  91889043 -GTTTCTCATTTTCAAAACACAAACCTTTGGTCCAC--------------ATCCA-TTACTC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1935848 56 +   3943991 AATTTCTCATTTTCAAA------ACCTTCTATTCACTCCTATATCCACAGACTAATTTACTT
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81439153 220 + 145441459 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=67285.000000
s hg38.chr15_KI270850v1_alt    422035 7 +    430880 TGTGTAG
s panTro5.chr15              63574519 7 +  83230942 tgtgtag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80531457 7 +  99763055 tgtgtag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       131621 7 -   1709092 tgtgtag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17293562 7 - 121039945 TGTGTAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60967511 7 + 169600520 TGTGTGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108494248 7 - 171882078 TGTGTGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       110764 7 -   2311642 TGTGTGG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       102827 7 -   1987038 TGTGTGG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21184350 7 -  24206276 TGTGTTG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       126128 7 -   1397330 TGTGTGG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       124600 7 -   1784207 TGTGTGG
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50565864 7 +  54856640 TGTGTAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       716202 7 -   2910086 tgtgtag
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40730290 7 +  42888418 TGTGTAG
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54483795 7 +  91889043 TATATAT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1935904 7 +   3943991 TGTATAT
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81439153 220 + 145441459 I
e calJac3.chr6               22331220 34 + 158406734 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=2134751.000000
s hg38.chr15_KI270850v1_alt    422042 229 +    430880 TCCATCTGAACTTTCATCAATGTATAGATCTGCATTCAGACCAATG---------------------TTTTACCATGATAAAAAATGTTTTTCTCTTGGTTATTCTACTATTGCCTGACAGTTCCTGCCCTTA-TTTTCAGCATATTTTGCCAT-AAAGTGAGGTCACTTGTAGC--TTTTTTTTGACCTTTAGT---------TGGTCTTCTACTGTCAACGGGAAAGAAGGCTTTAAGATAAATCAGAGACT-TAATAGAGT
s panTro5.chr15              63574526 229 +  83230942 tccatctgaactttcatcaatgtatagatctgcattcagaccaatg---------------------ttttaccatgataaaaaatatttttctcttggttattctactattgcctgacagttcctgccctta-tttttagcatattttgccat-aaagtgaggtcatttgtagc--ttttttttgacctttagt---------tggtcttctactgtcaacgggaaAGAAGGCTTTAAGATAAATCAGAGACT-TAATAGAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80531464 229 +  99763055 tccatctgaactttcatcaatgtacagatctgcattcagaccaatg---------------------ttttaccatgataaaaaatatttttctcttggttattctactattgcctgacagttcctgccctta-tttttagcatattttgccat-aaagtgaggtcatttgtagc--ttttttttgacctttagt---------tggtcttctactGCCAACGGGAAAGAAGGCTTTAAGATAAATCAGAGACT-TAATAGAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       131628 230 -   1709092 tccatctgaactttcatcaatgtatagaactgcattcagaccaatg---------------------ttttaccatgagaaaaaatgtttttctcttggttattctactattgcctgacagttcctgccctta-tttttagcatattttgccat-aaagtgaggtcatttgtagc-tttttttttgacctttagt---------tggtcttctactGTCAACGGCAAAGAAGGCTTTAAGATAAATCAGAGACT-TAATAGAGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17293569 228 - 121039945 TCTATCTGAACTTTCATCAATGtatagatctgcattcagaccaatg---------------------ttttaccatgagaaaaaatgtttttctcttggttattctactattgcttgacagttcctgccctta-tttttagcacattttgccat-aaagtgaggtcatttgtagc---tttttttgacctttagt---------tggtcttctactgtcaacaggaaAGAAGGCTTTAAGATAAATCAGAGACT-TAATAGAGC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60967518 238 + 169600520 TCTATCTGAACTTTCATCAATGTATAGATCTGCATTCAGACTAGTG---------------------TTTTACCATGAGAACAAATGTTTTTCTCTTGGTTATTCCACTATTGCCTGACAGTTCCTGCCCTTATTTTTTAGCATATTTTGCCAT-AAAGTGAGGTCATTTGTAGC---TTTTTTTGACATTCAGTTGGTCTTGCTGGTCTTTTACTGTTAACAGGAAAGAAGGCTTTTAGATAAATCAGAGACT-TCATAGAGG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108494255 238 - 171882078 TCTATCTGAACTTTCATCAATGTATAGATCTGCATTCAGACTAGTG---------------------TTTTACCATGAGAACAAATGTTTTTCTCTTGGTTATTCCACTATTGCCTGACAGTTCCTGCCCTTATTTTTTAGCATATTTTGCCAT-AAAGTGAGGTCATTTGTAGC---TTTTTTTGACATTCAGTTGGTCTTGCTGGTCTTTTACTGTTAACAGGAAAGAAGGCTTTTAGATAAATCAGAGACT-TCATAGAGG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       110771 238 -   2311642 TCTATCTGAACTTTCATCAATGTATAGATCTGCATTCAGACTAGTG---------------------TTTTACCATGAGAAAAAATGTTTTTCTCTTGGTTATTCCACTATTGCCTGACAGTTCCTGCCCTTATTTTTTAGCATATTTTGCCAT-AAAGTGAGGCCATCTGTAGC---TTTTTTTGACATTCAGTTGGTCTTGCTGGTCTTTTACTGTTAACAGGAAAGAAGGCTTTTAGATAAATCAGAGACT-TCATAGAGG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       102834 237 -   1987038 TCTATCTGAACTTTCATCAATGTATAGATCTGCATTCAAACTAGTG---------------------TTTTACCATGAGAAAAAATGTTTTTCTCTTGGTTATTCCACTATTGCCTGACAGTTCCTGCCCTTA-TTTTTAGCATATTTTGCCAT-AAAGTGAGGTCATTTGTAGC---TTTTTTTGACATTCAGTTGGTCTTGTTGGTCTTTTACTGTTAACAGGAAAGAAGGCTTTTAGATAAATCAGAGACT-TCATAGAGG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21184357 238 -  24206276 TCTATCTGAACTTTCATCAATGTATAGATCTGCATTCAGACTAGTG---------------------TTTTACCATGAGAAAAAATGTTTTTCTCTTGGTTATTCCGCTATTGCCTGACAGTTCCTGCCCTTATTTTTTAGCATATTTTGCCAT-AAAGTGAGGTCATTTGTAGC---TTTTTTTGACATTTAGTTGGTCTTGTTGGTCTTTTACTGTTAACAGGAAAGGCGGCTTTTAGATAAATCAGAGACT-TCATAGAGG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       126135 237 -   1397330 TCTATCTGAACTTTCATCAATGTATAGATCTGCATTCAGACTAGTG---------------------TTTTACCATGAGAAAAAATGTTTTTCTCTTGGTTATTCCACTATTGCCTGACAGTTCCTGCCCTTA-TTTTTAGCATATTTTGCCAT-AAAGTGAGGTCATTTGTAGC---TTTTTTTGACATTCAGTTGGTCTTGTTGGTCTTTTACTGTTAACAGGAAAGAAGGCTTTTAGATAAATCAGAGACT-TCATAGAGG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       124607 237 -   1784207 TCTATCTGAACTTTCATCAATGTATAGATCTGCATTCAGACCAGTG---------------------TTTTACCATGAGAAAAAATATTTTTCTCTTGGTTATTCTACTATTGCCTGACAGTTCCTGCCCTTA-TTTTTAGCATATTTTGCCAT-AAAGTGAGGTCATTTGTAGC---TTTTTTTGACCTTTAGTTGGTCTTGTTGGTCTTTTACTGTTAACAGGAAAGAAGGCTTTTAGATAAATCAGAGACT-TAATAGAGG
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50565871 225 +  54856640 TATACCTGAACTTTCATCAATATATAGATCAGCATTCAGACCAGTG---------------------TTTTGCCATGAGAAAAAATG---TTCTCTTGGTTATTCTACTATTGCCTGACAATGCCTACTCTTA-TTTTTGGCATATTTTGCCAT-AAAGTGCGATCATTTGTAGC---TTTTTTTGACCGTTGGT---------TGGTCTTTCACTGTCAAAGGGAAAGAAAGCTTTACGATAAATCAGAGACT-TAATAGAAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       716209 225 -   2910086 tctatctgaactttcatcaatgtatagatcagcattcagaccagtg---------------------ttttgccatgagaaaaaatg---ttctcttggttattctactattacctgacaattcctactctta-ttttcggcatattttgccat-aaagtgagatcatttgtagc---tttttctgaccgttggt---------tggtctttcactGTCAAGGGGAAAGAAGGCTTTAAGATAAATCAGAGACT-TAATAGAAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40730297 222 +  42888418 TCTATCTGAACTTTCATCAATGTATAGATCAGCATTCAGACCACTG---------------------TTTTGCCATGAGAAAAAATG---TTCTCTTGGTTATTCTACTATTGCCTGACAATTCCTACTCTTA-TTTTTGGCATATTTTGCCAT-AAAGTGAGATCATTTGTAG------TTTTTGACCGTTGGT---------TGGTCTTTCACTGTCAAGGGGAAAGAAGGCTTTACGATAAATCAGAGACT-TAACAGAAC
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81439373 222 + 145441459 TCGGTCTTCAACCTTAGCAACATATAGCTCTGAATTCAGACCAATA---------------------TTTTACCATAACAAAA---------CTTTTTCTTAATCTTCTATTGCCTAATAACGTCTATT-----GGTTTGGTGTATTCTGTCAT-AAAATGAGATTATCAACAAG-CTTTTTTTTTGTTTTTACCTCAACTT--AAGTCTT--ATTGTGGACAAAATAACACACTTTTATATGAATCAAAAACT-TAGTATagt
i mm10.chr7                 I 220 I 736
s canFam3.chr3               54483802 246 +  91889043 TCTACTGCAACTG--ATCAATTTATAGGTCTATGTTCACATCAAtgtttgtttgtttgtttgtttttttTTACCATAAAGAAAAA-GTAACCCCCTTGGTTATACCACTGTTGTCTAATAATTTTCCTGATTA-TTTTTGGCATATTTTGTCTTAAAAATGAGATCATTTGCAAAGGTTTTTTTAAACCTTTATT---------TGGTCTTTCACAATGGACAGGAAAGGAGATTTTAAGA-GGATCAGAGACT-TGGAAT---
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1935911 187 +   3943991 TCTGTCTTAACTTTGATCA------------------------------------------------ATTTATCATGAGGAAAAATA--GTTATCTTGGTTATTCCACTATAGCCCAATGGCTTCCACTACTG-TTTTCGGTATATTTTGCTAA-GAA---AGAT------TTGC---ATTTTAAAATCTTCACG---------TGATTTTTCA-TATGGACAGGAAAAATGGGCTTTA---AAGATAGAGGTTATTGAAGAGC
i dasNov3.JH570731          C 0 C 0
e calJac3.chr6               22331220  34 + 158406734 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=766410.000000
s hg38.chr15_KI270850v1_alt    422271 73 +    430880 GCAAACCTTAATACTACCGAAAATCAGGAGTCAACAGGAA-GAATTACTTGGCAATGCTGTAAAACAAAAACAA
s panTro5.chr15              63574755 73 +  83230942 GCAAACCTTAATACTACCAAAAATCAGGAGTCAACAGGAA-GAATTACTTGGCAATGCTGTAAAACAAAAACAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80531693 73 +  99763055 GCAAACCTTAATACTACCAAAAATCAGGAGTCAACAGGAA-GAATTACTTGGCAATGCTGTAAAACAAAAACAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       131858 73 -   1709092 GCAAACCTTAATACTACCGAAAATCAGGAGTCAACAGGAA-GAATTACTTGGCAATGCTGTAAAACAAAAACAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17293797 73 - 121039945 GCAAACCTTAATACTACCGAAAATCAGGAGTCAACAGGAA-GAATTACTTGGCAATGCTATAAAACAAGAACAA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60967756 73 + 169600520 GCAAACTTTAATACTACCGAAAACCAGGAGTCAACAGGAA-GAATTACTTGGCAATGCTGTAAAAGAAAAACAA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108494493 73 - 171882078 GCAAACTTTAATACTACCGAAAACCAGGAGTCAACAGGAA-GAATTACTTGGCAATGCTGTAAAAGAAAAACAA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       111009 73 -   2311642 GCAAACTTTAATACTACCGAAAACCAGGAGTCAACAGGAA-GAATTACTTGGCAATGCTGTAAAAGAAAAACAA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       103071 73 -   1987038 GCAAACTTTAATACTACCGAAAACCAGGAGTCAACAGGAA-GAATTACTTGGCAATGCTGCAAAAGAAAAACAA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21184595 73 -  24206276 GCAAACTTTAATACTACTGAAAACCAGGAGTCAACAGGAA-GAATTACTTGGCAATGCTGTAAAAGAAAAACAA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       126372 73 -   1397330 GCAAACTTTAATACTACCGAAAACCAGGAGTCAACAGGAA-GAATTACTTGGCAATGCTGCAAAAGAAAAACAA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       124844 73 -   1784207 GCAAACTTTAATACTACCGAAAACCAGGAGTCAACAGGAA-GAATTACTTGGCAATGCTGTAAAAGAAAAACAA
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50566096 73 +  54856640 CCAAACTTTAACACTACCAAAAATCAGGAGTCAACAGGAA-TAATTACTTGGCAATGCTGGAGAAGAAAAACaa
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       716434 73 -   2910086 CCAAATTTTAACACTACCAAAAATCAGGAGTCAACAGGAA-GAATTACTTGGCAATGCTGGAAAAGAAAAACAA
i cebCap1.NW_016107610v1    C 0 I 2217
s aotNan1.NW_018505940v1     40730519 73 +  42888418 CCAAACTTTAACACTACCAAAAATCAGGAGTCAACAGGAA-GAATTACTTGGCAATGCTGGAAAAGAAAAACAA
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54484048 73 +  91889043 GCAAATCTTAATACTATTGAGAACCATGGATCAAAAGAGC-AAATTACTTCGCAATGCTAGAAAAGAGAAACAG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1936098 71 +   3943991 TCAAACCTTAATGCTACTAATAATCAAGGGTCAACAAGAAGGGACTACTTGGCAAAACTGGAAAACAATAA---
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81439595 736 + 145441459 I
e calJac3.chr6               22331220 34 + 158406734 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=96943.000000
s hg38.chr15_KI270850v1_alt    422344 23 +    430880 TTCTTTAATTAAAAA-ATTAATTT
s panTro5.chr15              63574828 23 +  83230942 TTCTTTAATTAAAAA-ATTAATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80531766 23 +  99763055 TTCTTTAATTAAAAA-ATTAATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       131931 23 -   1709092 TTCTTTAATTAAAAA-ATTAATTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17293870 24 - 121039945 TTCTTTAATTAAAAAGATTAATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60967829 23 + 169600520 TTGTTTAATTAAAAA-ATTAATTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108494566 23 - 171882078 TTGTTTAATTAAAAA-ATTAATTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       111082 23 -   2311642 TTGTTTAATTAAAAA-ATTAATTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       103144 23 -   1987038 TTGTTTAATTAAAAA-ATTAATTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21184668 23 -  24206276 TTGTTTAATTAAAAA-ATTAATTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       126445 23 -   1397330 TTGTTTAATTAAAAA-ATTAATTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       124917 19 -   1784207 TTGTTTAATTAAAA-----AATTT
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50566169 16 +  54856640 ----ttaatttaaaa-at---ttt
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40730592 16 +  42888418 ----TTAATTTTAAA-AT---TTT
i aotNan1.NW_018505940v1    C 0 I 5
s canFam3.chr3               54484121  1 +  91889043 -----------------------T
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1936169 11 +   3943991 ---TTCTTTTAAAA----------
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81439595 736 + 145441459 I
e calJac3.chr6               22331220 34 + 158406734 I
e cebCap1.NW_016107610v1       716507 2217 -   2910086 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=1518425.000000
s hg38.chr15_KI270850v1_alt    422367 187 +    430880 AAAAACAA----TTGTTTAATGCTAATGATATA-------GACACAAATACcctcaagataaaactagttctacctatctacctattgttag-aaagaatggcttTTGAGGAAAC-TCACCTAATACAAGTTAtt---------------ttatttgagacagagtttt---------------------gctcttgtcgccca--cgctggagcgcaatggctcaatctccgctctc
s panTro5.chr15              63574851 191 +  83230942 AAAAACAATTCTTTGTTTAATGCTAATGATATA-------GAGACAAATACcctcaagataaaactagttctacctatctacctattgttag-aaagaatggcttTTGAGGAAAC-TCACCTAATACAAGTTAtt---------------ttatttgagacagagtttt---------------------gctcttgtcgccca--cgctggagcgcaatggctcaatctccgctctc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80531789 191 +  99763055 AAAAACAATTCTTTGTTTAATGCTAATGATATA-------GAGACAAATACcctcaagataaaactagttctacctatctacctattgttag-aaagaatggcttTTGAGGAAAC-TCACCTAATACAAGTTAtt---------------ttatttgagacagagtttt---------------------gctcttgtcgccca--cgctggagcgcaatggctcaatctccgctctc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       131954 191 -   1709092 AAAAACAATTCTTTGTTTAATGCTAATGATATA-------GAGACAAATACcctcaagataaaactagttctacctatctacctattgttag-aaagaatggcttTTGAGGAAAC-TCACCTAATACAAGTTAtt---------------ttatttgagacagagtttt---------------------gctcttgtcgccca--cactggagcgcaatggctcaatctccgctctc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17293894 183 - 121039945 AAAAACAATTCTTTGTTTAATGCTAATGATATA-------GAGACAAATACcctcaagataaaattagttctac----ctacctattgttag-aaagaatggcttTTGAGGAAAC-TCACCTAATACAAGTTAt-------------------tttgagacagagtttt---------------------gctcttgccaccca--cactggagcgcgatggctcaatctcagctctc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60967852 196 + 169600520 AAAAACAATTCTTTGTTTAatgctgatgacata-------gagacgaataccctcaagataaaactagttctacctatctacctattgttag-aaagaatggcttTTGAGGAAAC-TCACCTAATACAAGTTAttt----------tatgttatttgagatggagtttt---------------------gctcttgtcgccca--ggctggagcacaatggttcaatctcagctctc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108494589 196 - 171882078 AAAAACAATTCTTTGTTTAATGCTGATGACACA-------GAGACGAATACCCTCAAGATAAAACTAGTTCTACCTATCTACCTATTGTTAG-AAAGAATGGCTTTTGAGGAAAC-TCACCTAATACAAGttattt----------tatgttatttgagatggagtttt---------------------gctcttgtcgccca--ggctggagcacaatggttcaatctcagctctc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       111105 196 -   2311642 aaaaacaattatttgtttaatgctgatgacata-------gagacgaataccctcaagataaaactagttctaccgatctacctattgttag-aaagaatggcttTTGAGGAAAC-TCACCTAATACAAGTTAttt----------tatgttatttgagatggagtttt---------------------gctcttgtcgccca--ggctggagcacaatggttcaatctcagctctc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       103167 196 -   1987038 AAAAACAATTCTTTGTTTAATGCTGATGACACA-------GAGACgaataccctcaagataaaactagttctacctatctacctattgttag-aaagaatggcttTTGAGGAAAC-TCACCTAATACAAGTTAttt----------tatgttatttgagatggagtttt---------------------gctcttgtcaccca--tgctggagcacaatggttcaatctcagctctc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21184691 196 -  24206276 AAAAACAATTCTTTGTTTAATGCTGATGATATA-------GGGACgaataccctcaagataaaactagttctacctatctacctattgttag-aaagaatggcttTTGAGGAAAC-TCACCTAATACAAGTTAttt----------tatgttatttgagatggagtttt---------------------gctcttgtcgccca--cgctggagcacaatggttcaatctcagctatc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       126468 196 -   1397330 AAAAACAATTCTTTGTTTAATGTTGATGACACA-------GAGACgaataccctcaagataaaactagttctacctatctacctattgttag-aaagaatggcttTTGAGAAAAC-TCACCTAATACAAGTTAttt----------tatgttatttgagatggagttct---------------------gctcttgtcgccca--tgctggagcacaatggttcaatctcagctctc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       124936 196 -   1784207 GAAAACAATTCTTTGTTTAATGCTGATAATATA-------GACACAAATACcctcaagataaaactagttctacctatctatctattgttag-aaagaatggcttTTGAGGAAAC-TCACCTAATACAAGTTAttt----------tatgttatttgagatggagtttt---------------------gctcttgtcgccca--tgctggagcacaatggttcaatctcagctctc
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50566185 182 +  54856640 aattaCGA----TGGTTTAATG-TGATGATATA-------AAGACAAACGGCCTCAAAATAAAACTAGTTCTAGCTATCCACCTATTGTTAC-AAAGAATGGGTTTTGAGGAAAC-TCACCTAATACAAGttatt-------------------ttgagacacagtttc---------------------gctcttgtcaccca--cactgaagtgcaatggctccatctcagctcac
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       718724 183 -   2910086 AAAAACAA----TTGTTTAATG-TGATGATATA-------AAGATAAATGGCCTCAAGATAAAACTAGTTCTAGCTATCTACCTATTGTTACAAAAAAATGGATTTTGAGGAAAC-TCACCTAATACAAGTTAtt-------------------ttgagagacagtttc---------------------actcttgtcaccca--cgttggagtgcaatggctccatctcggctcac
i cebCap1.NW_016107610v1    I 2217 C 0
s aotNan1.NW_018505940v1     40730613 181 +  42888418 AAAAACAA----TTGTTTAATG-TGATGATATA-------AAGACAaatggcctcaagataaaactagttctagctatctacctattgttac-aaagaatgggttTTGA-GAAAC-TCGCCTAATACAAGTTAtt-------------------ttgagacacagtttc---------------------aatcttgtcaccca--tgttggaatgcaatggctccatcttggctcac
i aotNan1.NW_018505940v1    I 5 C 0
s canFam3.chr3               54484122 199 +  91889043 ------AA-----TGCTTACTGTCACTGGC------------TAAAAATGGTGTCAAGATAAAACCAGTTTG---TACCTCCTCATTGTCAG-AAAGAATGGTTCATGAGGAATCTTCGCTAAATACATGCTAtttttttaatttattttttattggtgttaaatttaccaacatacagaataacccccagtgcccgtcacccattcact------------cccaccccccgccctc
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1936180 133 +   3943991 ---------------TTGAATGCTTATGATATATTCACCTGCTAAAAATGGCCTCAAGGT-AAACTA-TTCTACCTATCTACC----ATCAG-AAAGAATAGCTCATGAGGAATC-TCTATTAACAGAAGTTATTT------------------------TAGAGCCAT---------------------TCTCCGTTTTC-------------------------------------
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81439595 736 + 145441459 I
e calJac3.chr6               22331220  34 + 158406734 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=211694.000000
s hg38.chr15_KI270850v1_alt    422554 24 +    430880 tgtaacctctgcc-tcccgggttca
s panTro5.chr15              63575042 24 +  83230942 tgtaacctctgcc-tcccgggttca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80531980 24 +  99763055 tgtaacctctgcc-tcccgggttca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       132145 24 -   1709092 tgcaacctctgcc-tcctgggttca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17294077 24 - 121039945 tgcaacctccgcc-tcacaggttca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60968048 24 + 169600520 tgcaacctccgcc-tccggggttca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108494785 24 - 171882078 tgcaacctccgcc-tccggggttca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       111301 24 -   2311642 tgcaacctccgcc-tccggggttca
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       103363 24 -   1987038 tgcaacctccgcc-tcccgggttca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21184887 24 -  24206276 tgcaacctccacc-tcccgggttca
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       126664 24 -   1397330 tgcaacctccgcc-tcccgggttca
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       125132 24 -   1784207 tgcaacctccgcc-tcccggattca
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50566367 24 +  54856640 tgcaacctctgcc-tcccagattca
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       718907 24 -   2910086 tgcaacctctgcc-tcccaggttca
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40730794 24 +  42888418 tgcaacctctgcc-tcccgggttca
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54484321 25 +  91889043 ctccccttccaccacccctagttcg
i canFam3.chr3              C 0 I 235
e mm10.chr7                  81439595 736 + 145441459 I
e calJac3.chr6               22331220 34 + 158406734 I
e dasNov3.JH570731            1936313  0 +   3943991 C
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=362417.000000
s hg38.chr15_KI270850v1_alt    422578 41 +    430880 agtgattctcctgcctcagcctcccgagtagctgggattac
s panTro5.chr15              63575066 41 +  83230942 agtgattctcctgcctcagcctcccgagtagctgggattac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80532004 41 +  99763055 agtgattctcctgcctcagcctcccgagtagctgggattac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       132169 40 -   1709092 agtgattctcctgcctcagcctcccgagtagct-ggattac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17294101 41 - 121039945 agtgattctcctgcctcagcctcccgagtagctgggattac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60968072 41 + 169600520 agtgattctcctgcctcagcctcctgagtagctgggattac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108494809 41 - 171882078 agtgattctcctgcctcagcctcctgagtagctgggattac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       111325 41 -   2311642 agtgattctcctgcctcagcctcctgagtagctgggattac
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       103387 41 -   1987038 agtgattctcccgcctcagcctcctgagtagctgggattac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21184911 41 -  24206276 agtgattctcccgcctcagcctcctgagtagctgggattac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       126688 41 -   1397330 agtgattctcccgcctcagcctcctgagtagctgggattac
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       125156 41 -   1784207 agtgattctcccgcctcagcttcctgagtagctgggattat
i colAng1.NW_012117110v1    C 0 C 0
s saiBol1.JH378108           50566391 41 +  54856640 agcaattctcctgcctcagccttcagagtagctgggatcac
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       718931 41 -   2910086 agcaattctcctgcctcagcctttggagtggctgggatcac
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40730818 41 +  42888418 agcaattctcctgcctcagccttcggagtagctgggatcac
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81439595 736 + 145441459 I
e calJac3.chr6               22331220 34 + 158406734 I
e dasNov3.JH570731            1936313  0 +   3943991 C
e canFam3.chr3               54484346 235 +  91889043 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=876402.000000
s hg38.chr15_KI270850v1_alt    422619 157 +    430880 aggcatgtgccaccacgcctggctaatttttgtacttttggtagagacaggg--tttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatctgcctgcctcagcctcccaaagcgctgggattataggcatgagccacagtgcctgg
s panTro5.chr15              63575107 157 +  83230942 aggcatgtgccaccacgcctggctaatttttgtacttttggtagagacaggg--tttcaccatgttggccaggctggtctcaaactcctgacctgaggtgatctgcctgcctcagcctcccaaagcgctgggattataggcatgagccacagcgcctgg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80532045 157 +  99763055 aggcatgtgccaccacgcctggctaatttttgtacttttggtagagacaagg--tttcaccatgttggccaggctggtctcaaactcctgacctgaggtgatctgcctgcctcagcctcccaaagcgctgggattataggcatgagccacagcgcctgg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       132209 149 -   1709092 aggcatgt--------gcctggctaatttttgtacttttggtagagacaggg--tttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatctgcctgcctcagcctcccaaagcgctgggattataggcatgagccacagcgcctgg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17294142 157 - 121039945 aggcatgtgtcaccacgcctggctaatttttgtatttttggtagagacaagg--tttcaccatgttggccaggctggtctcaaactcctgaccttaggtgatctgcctgcctcagcctcccacagcgctgggattacaggcatgagccacagcgcctgg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60968113 159 + 169600520 aggcatgtgccatcacgcctggctaatttttgtacttctggtagagatgggggatttcaccatattggccaggctggtctcaaactcctgatctcaggtgatctgcccacctcggcctcccaaagcactgggattacaggcatgagccacagcacctgg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108494850 159 - 171882078 aggcatgtgccatcacacctggctaatttttgtacttctggtagagatgggggatttcaccatattggccaggctggtctcaaactcctgacctcaggtgatctgcccacctcggcctcccaaagcactgggattacaggcatgagccacagcacctgg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       111366 159 -   2311642 aggcgtgtgccatcacgcctggctaatttttgtacttctggtagagatgggggatttcaccatattggccaggctggtctcaaactcctgacctcaggtgatctgcccacctcggcctcccaaagcactgggattacaggcatgagccacagcacctgg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       103428 159 -   1987038 aggcgtgtgtcatcacgcctggctaatttttgtacttctggtagagatgggggatttcaccatattggccaggctggtctcaaactcctgacctcaggtgatctgcccacctcggcctcccaaagcactgggattacaggtatgagccacagcacctgg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21184952 159 -  24206276 aggcgtgtgccatcacacctggctaatttttgtacttctggtagagatgggggatttcaccatattggccaggctggtctcaaactcctgacctcaggtgatctgcccacctcgggctcccaaagcactgggattacagggatgagccacagcacctgg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       126729 159 -   1397330 aggcgtgtgccatcacgcctggctaatttttgtacttctggtagagatgggggatttcaccatattggccaggctggtctcaaactcctgacctcaggtgatctgcccacctcagcctcccaaagcactgggattacaggcatgagccacagcacctgg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       125197 159 -   1784207 aggcgtgtgccaccacagttggttaattcttgtacttttggtagagacaggggatttcaccgtattggccaggctagtctcaaactcctgacctcaggtgatccgcccacctcagcctcccaaagcactgggattacaggcatgagccacagcacctgg
i colAng1.NW_012117110v1    C 0 C 0
e aotNan1.NW_018505940v1     40730859   0 +  42888418 C
e mm10.chr7                  81439595 736 + 145441459 I
e calJac3.chr6               22331220  34 + 158406734 I
e dasNov3.JH570731            1936313   0 +   3943991 C
e canFam3.chr3               54484346 235 +  91889043 I
e cebCap1.NW_016107610v1       718972   0 -   2910086 C
e otoGar3.GL873530             718910 1898 -  36342412 I
e saiBol1.JH378108           50566432   0 +  54856640 C

a score=235868.000000
s hg38.chr15_KI270850v1_alt    422776 37 +    430880 ccCTAATCCAAGTTATTTTAGATCAGGCCTCAATTTT
s panTro5.chr15              63575264 37 +  83230942 ccCTAATCCAAGTTATTTTAGATCAGGCCTCAATTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80532202 37 +  99763055 ccCTAATCCAAGTTATTTTAGATCAGGCCTCAATTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       132358 37 -   1709092 ccCTAATCCAAGTTATTTTAGATCAGGCCTCAATTTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17294299 37 - 121039945 ccCTAATCCAAGTTATTTTAGATCAGGCCTCAATTTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60968272 37 + 169600520 ccCTAATACAAGTTATTTTAGATCAGGCCTCAATTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108495009 37 - 171882078 ccCTAATACAAGTTATTTTAGATCAGGCCTCAATTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       111525 37 -   2311642 ccCTAATACAAGTTATTTTAGATCAGGCCTCAATTTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       103587 37 -   1987038 ccCTAATACAAGTTATTTTAGATCAGGCCTCAATTTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21185111 37 -  24206276 ccCTAATACAAGTTATTTTAGATCAGGCCTCAATTTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       126888 37 -   1397330 ccCTAATACAAGTTACTTTAGATCAGGCCTCAATTTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       125356 37 -   1784207 ccCTAATACAAGTTATTTTAGATCAGGCCTCAATTTT
i colAng1.NW_012117110v1    C 0 C 0
s canFam3.chr3               54484581 34 +  91889043 cattaatacatGCTATTTTA---TAGGTCTCTATGTT
i canFam3.chr3              I 235 C 0
e aotNan1.NW_018505940v1     40730859  0 +  42888418 C
e mm10.chr7                  81439595 736 + 145441459 I
e calJac3.chr6               22331220 34 + 158406734 I
e dasNov3.JH570731            1936313  0 +   3943991 C
e cebCap1.NW_016107610v1       718972  0 -   2910086 C
e otoGar3.GL873530             718910 1898 -  36342412 I
e saiBol1.JH378108           50566432  0 +  54856640 C

a score=119868.000000
s hg38.chr15_KI270850v1_alt    422813 17 +    430880 CTCCTCTCCAATAGATA
s panTro5.chr15              63575301 17 +  83230942 CTCCTCTCCAATAGATA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80532239 17 +  99763055 CTCCTCTCCAATAGATA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       132395 17 -   1709092 CTCCTCTCCAATAGATA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17294336 14 - 121039945 ---CTCTCCAATAGATA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60968309 17 + 169600520 CTCCTCTCCAACAGGTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108495046 17 - 171882078 CTCCTCTCCAACAGGTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       111562 17 -   2311642 CTCCTCTCCAACAGGTA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       103624 17 -   1987038 CTCCTCTCCAACAGGTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21185148 17 -  24206276 CTCCTCTCCAACAGGTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       126925 17 -   1397330 CTCCTCTCCAACAGGTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       125393 17 -   1784207 CTCCTCTCCAACAGATA
i colAng1.NW_012117110v1    C 0 C 0
s canFam3.chr3               54484615 17 +  91889043 CTGCTCTTCAACAGGTA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1936313 17 +   3943991 CTTCTCTTCAACAGTCA
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40730859  0 +  42888418 C
e mm10.chr7                  81439595 736 + 145441459 I
e calJac3.chr6               22331220 34 + 158406734 I
e cebCap1.NW_016107610v1       718972  0 -   2910086 C
e otoGar3.GL873530             718910 1898 -  36342412 I
e saiBol1.JH378108           50566432  0 +  54856640 C

a score=87310.000000
s hg38.chr15_KI270850v1_alt    422830 7 +    430880 AGAGCTG--
s panTro5.chr15              63575318 7 +  83230942 AGAGCTG--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80532256 7 +  99763055 AGAGCTG--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       132412 7 -   1709092 AGAGCTG--
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17294350 7 - 121039945 AGAGCTG--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60968326 7 + 169600520 AGAGCTG--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108495063 7 - 171882078 AGAGCTG--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       111579 7 -   2311642 AGAGCTG--
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       103641 7 -   1987038 AGAGCTG--
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21185165 7 -  24206276 AGAGCTG--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       126942 7 -   1397330 AGAGCTG--
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       125410 7 -   1784207 AGAGCTG--
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22331254 7 + 158406734 agAGCTG--
i calJac3.chr6              I 34 C 0
s saiBol1.JH378108           50566432 7 +  54856640 agAGCTG--
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       718972 7 -   2910086 agAGTTG--
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40730859 7 +  42888418 agAGCTG--
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54484632 7 +  91889043 AGAGCTG--
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1936330 9 +   3943991 AGAGTTTTG
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81439595 736 + 145441459 I
e otoGar3.GL873530             718910 1898 -  36342412 I

a score=3412904.000000
s hg38.chr15_KI270850v1_alt    422837 303 +    430880 ACACTCCTATCATGAAAC--TGTTTTCCTATAGCCATGATCATC-AACTAGGA--CAACAAAGGTGAGGGAAATGGTCTGAAG--AAAAGCATT-TCCCTCCTCCACAAAGGAAAA------TCCTCCTCCTCCTCCTTAAAAGTGGGAATCATTGTTTTGAAAAGCAGAAAGAACACA--GGCTTTGCAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAGCCTTGGTTACCTAAAGGTAT---------AAAAAAAAAAAAAAGAGGG--TAGCACCTAC-TTTGCAGACTTCGTAGTAGTCAGAAATACATAAAGTACATG
s panTro5.chr15              63575325 303 +  83230942 ACACTCCTATCATGAAAC--TGTTTTCCTATAGCCATGATCATC-AACTAGGA--CAACAAAGGTGAGGGAAATAGTCTGAAG--AAAAGCATT-TCCCTCCTCCACAAAGGAAAA------TCCTCCTCCTCCTCCTTAAAAGTGGGAATCATTGTTTCGAAAAGCAGAAAGAACACA--GGCTTTGCAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAGCCTTGGTTACCTAAAGGTAT---------AAAAAAAAAAAAAAGAGGG--TAGCACCTAC-TTTGCAGACTTCGTAGTAGTCAGAAATACATAAAGTACATG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80532263 305 +  99763055 ACACTCCTATCATGAAAC--TGTTTTCCTATAGCCATGATCATC-AACTAGGA--CAACAAAGGTGAGGGAAATAGTCTGAAG--AAAAGCATT-TCCCTCCTCCACAAAGGAAAA------TCCTCCTCCTCCTCCTTAAAAGTGGGAATCATTGTTTCGAAAAGCAGAAAGAACACA--GGCTTTGCAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAGCCTTGGTTACCTAAAGGTAT----AA---AAAAAAAAAAAAAAGAGGG--TAGCACCTAC-TTTGCAGACTTCGTAGTAGTCAGAAATACATAAAGTACATG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       132419 304 -   1709092 ACACTCCTATCATGAAAC--TGTTTTCCTATAGCCATGATCATC-AACTAGGA--CAACAAAGGTGAGGGAAATAGTCTGAAG--AAAAGCATT-TCCCTCTTCCACAAAGGAAAA------TCCTCCTCCTCCTCCTTAAAAGTGGGAATCATTGTTTCGAAAAGCAGAAAGAACACA--GGCTTTGCAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAGCCTTGGTTACCTAAAGGTAT-----T---AAAAAAAAAAAAAAGAGGG--TAGCACCTAC-TTTGCAGACTTTGTAGTAGTCAGAAATACATAAAGTACATG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17294357 303 - 121039945 ACACTCCTATCACGAAAC--TGTTTTCCTATAGCCATGATCATC-AACTAGGA--CAACAAACGTGAGGGAAATAGTCTGAAG--AAAAGCATT-TCCCTCCTCCACAAAGGAAAA---tcctcctcctcctcctcctTAAAAGTGGGAATCATTGTTTCGAAAAACAGAAAGCACACA--GGCTTTGGAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAGCCTTGGTTACCTAAAGGTAT------------TAAAAAAAAAAGAGGG--TAGCACCTAC-CTTGCAGACTTTGTAGTAGTCAGAAATACATAGAGTACATG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60968333 307 + 169600520 ACCCTCCTATCATGAAAC--TGTTTTCCTATAGCCATGATCATC-AACTAGGA--CAACAAAGGTAAGGGAGATAGTCTGAAG--AAAAGCATT-CCCCTCCTCCATAAAGGAAAA------TCCTCCTTCTCCTCCTTAAAACTGGGAATCATTGTTTTGAAAAGCAGAAAGAACACA--GGCTTTGGAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAGCCTTGGTTACCTAAAGGTTT-----TaaaaaaaaaaaaaaaaaGTGGG--TAACACCTAC-TTTGCAGACTTTGTAGTAGTCAGAAATACATAAAGTACATG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108495070 307 - 171882078 ACCCTCCTATCATGAAAC--TGTTTTCCTATAGCCATGATCATC-AACTAGGA--CAACAAAGGTAAGGGAGATAGTCTGAAG--AAAAGCATT-CCCCTCCTCCATAAAGGAAAA------TCCTCCTCCTCCTCCTTAAAACTGGGAATCATTGTTTTGAAAAGCAGAAAGAACACA--GGCTTTGGAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAGCCTTGGTTACCTAAAGGTTT-----TTAAAAAAAAAAAAAAAAGTGGG--TAACACCTAC-TTTGCAGACTTTGTAGTAGTCAGAAATACATAAAGTACATG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       111586 307 -   2311642 ACCCTCCTATCATGAAAC--CGTTTTCCTATAGCCATGATCATC-AACTAGGA--CAACAAAGGTAAGGGAGATAGTCTGAAG--AAAAGCATT-CCCCTCCTCTATAAAGGAAAA---tcctcctcctcctcctcctTAAAACTGGGAATCATTGTTTTGAAAAGCAGAAAGAACACA--GGCTTTGGAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAGCCTTGGTTATCTAAAGGTTT-----T---AAAAAAAAAAAAAAGTGGG--TAACACCTAC-TTTGCAGACTTTGTAGTAGTCAGAAATACATAAAGTACATG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       103648 303 -   1987038 ACCCTCCTATCATGAAAC--TGTTTTCCTATAGCCATGATCATC-AACTAGGA--CAACAAAGGTAAGGGAGATAGTCTGAAG--AAAAGCATT-CCCCTCCTCCATAAAGGAAAA------TCCTCCTCCTCCTCCTTAAAACTGGGAATCATTGTTTTGAAAAGCAGAAAGAACACA--GGCTTTGGAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAGCCTTGGTTACCTAAAGGTTT---------AAAAAAAAAAAAAAGTGGG--TAACACCTAC-TTTGCAGACTTTGTAGCAGTCAGAAATACATAAAGTACATG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21185172 303 -  24206276 ACACTCCTATCATGAAAC--TGTTTTCCTATAGCCATGATCATC-AACTAGGA--CAACAAAGGTGAGGCAGATAGTCTGAAG--AAAAGTATT-CCCCTCCTCCATAAAGGAAAA------TCCTCCTCCTCCTCCTTAAAACTGGGAATCATTGTTTCGAAAAGCAGAAAGAACACA--GGCTTTGGAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAGCCTTGGTTACCTAAAGGTTT---------AAAAAAAAAAAAAAGTGGG--TAACACCTAC-TTTGCAGACTTTGTAGTAGTCAGAAATACATAAAGTACATG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       126949 303 -   1397330 ACCCTCCTATCATGAAAC--TGTTTTCCTATAGCCATGATCATC-AACTAGGA--CAACAAAGGTAAGGGAGATAGCCTGAAG--AAAAGCATT-CCCCTCCTCCATAAAGGAAAA------TCCTCCTCCTCCTCCTTAAAACTGGGAATCATTGTTTTGAAAAGCAGAAAGAACACA--GGCTTTGGAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAGCCTTGGTTACCTAAAGGTTT---------AAAAAAAAAAAAAAGTGGG--TAACACCTAC-TTTGCAGACTTTGTAGTAGTCAGAAATACATAAAGTACATG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       125417 309 -   1784207 ACATTCCTATCATGAAAC--TGTTTTCCTACAGCCATGATCATC-AACTAGGA--CAACAAAGGTGAGGGAGATAGTCTGAAG--AAAAGCATT-CCCCTCCTCCATAAAGGAAAAtcctcctcctcctcctcctcctTAAAACTGGGAATCATTGTTTTGAAAAGCAGAAAGAACACA--GGCTTTGGAATACAAACACCAGGTCTACCACTTAGGTAT-CACTCTGAGCCTTGGTTACCTAAAGGTTT---------AAAAAAAAAAAAAAGTGGG--TAGCACCTAC-TTTGCAGACTTTGTAGTAGTCAGAAATACATAAAGTACATG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22331261 275 + 158406734 ATACTCCTATCATGAAAC--TGTTTTCCTATAGCCATGATCCTC-AACTAGGA--CAACGAAGGTGATAGAGATAGTCTGAAG--AAAATC------------------------------CTTCCCCTCCTCCTCCTCAAAACTGGGAATCATTGTTTTGAAAAGCAGAAAGAACATA--GGCTTTGGAATA-AAACACCAGGTCTAGCACTTAGGTAT-CACACTGAGCCTTGGT----TAAAGGTAT---------AAAAAAAAAAGTGGGGGGG--CAGCACCTAC-TTGGCAGACTTGGTAGTGGTCAGAAATACCTAAAGTACATG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50566439 304 +  54856640 AAACTCCTATCATGAAAC--TGTTTTCCTATAGCCATGATCCTC-AAGTAGGA--CAACAAAGGTGATGGAGATACTCTGAAG--AAAAGCATT-ACCCTACTACATAAAGGAAAA---T-CTTCCCCTCCTCCTCCTCAAAACTGGGAATCATTGTTTTGAAAAGCAGAAAGAACATA--GGCTTTGGAATA-AAACACCAGGTCTACCACTTAGTTAT-CACTCTGAGCCTTGGTTACCTAAAGGTAT---------AAAAAAAAAAGTGGAGGGG--TAGCACCTAC-TTTGCAGACTTTGTAGTAGTCAGAAATACATAAAGTACATG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       718979 313 -   2910086 ACACTCCTACCATCAAAC--TGTTTTCCTATAGCCATGATCCTC-AACTAGGA--CAACAAAGGTGACGGAGATACTCTGAAG--AAAAGCATT-TCCCTACTACATAAAGGAAAA---tccttctcctcctcctcctcAAAACTGGGAATCATTGTTTTGAAAAGCAGAAAGAACATA--GGCTTTGGAATA-AAACACAAGGTCTACCACTTAGGTAT-CACTTTGAGCCTTGGTTACCTAAAGGTATTAAAAA---AAAAAAAAAGGCGGGGGGGTATAGCACCTAC-TTTGCAGACTTTGTAGTAGTCAGAAATACATAAAGTACATG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40730866 306 +  42888418 ATACTCTTATCATGAAAC--TGTTTTCCTATAGCCATGATCCTC-AACTAGGA--CAACAAAGGTGATGGAGATAGTCTGAAG--AAAAGCATT-CCCGTACTACATAAAGGAAAA---TCCTTCCCCTCCTCCTCCTCAAAACTGGGAATCATTGTTTTGAAAAGCAGAAAGAATTTA--GGCTTTGGAATA-AAACACCAGGTCTACcacttaggtat-cactctgagccttggttgcctaaaggtat-----a---aaaaaaaaaagggggcggg--tagcacctac-tttgcagactttgtagtagtcagaaatacataaagtacatg
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             720808 294 -  36342412 ACACTCCCACTATGAAACAGTGGTTTCCTACAGCCATGATCCTC-AACTGAGT--AAGGGGAGGGGA--GAGACAGTCTGGGGAAAAAAGCATT-CTCCTTTCCCATAAGAGGGAA---------GAATCCTCTTCCACAAAACTGTAAATCACTGTTTCCAGAAGCAGAACAAACACA--GGCTTTGGAGTACAAACACCAAGTCTAACATCTAAGTAT-TACCCGGCACCTTGGTTTTGT-GAGCTAT---------AAAAACCG--------GGG--TATAACTTATGTTTGCAGACTCTACAGTAACCATAGATACATAAAATGCATG
i otoGar3.GL873530          I 1898 C 0
s canFam3.chr3               54484639 281 +  91889043 ACATTCCTATCATGACACACAGGTCTCCTACAGCAATAGTTCTC-AACTGGGAGCCA--------GAGGGAGACAATATTACA--GAAAGCAGCATTCCTTTTCCACAAGGGAAAA------AAATCTTCCCC-------AAACTG--AACCACTGTTTCACAAAGCAGAAAGAACACA--GCCCTCGAAGCATAAATACTAACTCTACCATATAAGtatccactatgagctttggttgtct-taggtat---------aaaatg----------gag--taccatctac-tctgcagactctgtagtaatgagaaatctatgaagtgcctg
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1936339 273 +   3943991 ACACTTCCATCATGAAATAGTGATTTCTTACAG---TGAACCTCAAACTGGGA--CA-CACATGGGGGAGGTACAGTCTGAA---AAGAGCATT-CCCCTTTTCCATACAGGAAGA--------------ATCTTCCCTAAAATTGCAAATTACTGTTTCACAGAGCAGAAAGAATACAAGAGCTTTGGAGTATAAACACTAGGTATAC----TAAGTATTTtctctgagtctcagttgcct-caggtat---------acaatgggaa-----------tgtcatctac-tttgcagacttTG---------GAAATGTACAAAATGTATG
i dasNov3.JH570731          C 0 I 607
e mm10.chr7                  81439595 736 + 145441459 I

a score=1575663.000000
s hg38.chr15_KI270850v1_alt    423140 163 +    430880 GATATGCTCAATAAATACTT--TTAGTGGCAGATGT---CCAATTACACACCAGTTATTAAATTATATCACTgttactcag--aggtatggttt-caacttattcatcctagccaagttcatcaagaagctTATTTACTTGTTTTAGCA--TATAACTGG------TT---TTTTTTTTTTT
s panTro5.chr15              63575628 162 +  83230942 GATATGCTCAATAAATACTT--TTAGTGGCAGATGT---CCAATTACACACCAGTTATTAAATTATATCACTgttactcag--aggtatggttt-caacttattcatcctagccaagttcatcaagaagctTATTTACTTGTTTTAGCA--TATAACTGG-------G---TTTTTTTTTTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80532568 164 +  99763055 GATATGCTCAATAAATACTT--TTAGTGGCAGATGT---CCAATTACACACCAGTTATTAAATTATATCACTgttactcag--aggtatggttt-caacttattcatcctagccaagttcatcaagaagctTATTTACTTGTTTTAGCA--TATAACTGGG-----GT---TTTTTTTTTTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       132723 162 -   1709092 GATATGCTCAATAAATACTT--TTAGTGGCAGATGT---CCAATTACACACCAGTTATTAAATTACATCACTgttactcag--aggtatggttt-caacttattcatcctagccaagttcatcaagaagctTATTTACTTGTTTTAGCA--TATAACTGG-------G---CTTTTTTTTTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17294660 171 - 121039945 GAGATGCTCAATAAATACCTTATTAGTGGCAGACGT---CTAATTCCAAACAAGTTATTAAATTATATCACTgttactcag--aggtatggttt-caacttattcatcctagccaagttcatcaagaagctTATTTACTTGTTTTAGCA--TATAACTGAGttttttt---ttttttttttC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60968640 157 + 169600520 GATATGCTCAATAAATACCTTATTAGTGTCAGATGT---CCAATTCCACAT--GTTATTAAATTATATCCCTGTTACTCAG--AAGTATGGTTT-CAACTTATTCGTCCTAGCCAAGTTCATCAAGAAGC----TTACTTGTTTTAGCA--TATAACTGG-------G----TTTTTTTTTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108495377 157 - 171882078 GATATGCTCAATAAATACCTTATTAGTGTCAGATGT---CCAATTCCACAT--GTTATTAAATTATATCCCTGTTACTCAG--AAGTATGGTTT-CAACTTATTCGTCCTAGCCAAGTTCATCAAGAAGC----TTACTTGTTTTAGCA--TATAACTGG-------G----TTTTTTTTTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       111893 158 -   2311642 GATATGCTCAATAAATACCTTATTAGTGTCAGATGT---CCAATTCCACAT--GTTATTAAATTATATCCCTGTTACTCAG--AAGTATGGTTT-CAACTTATTCGTCCTAGCCAAGTTCATCAAGAAGC----TTACTTGTTTTAGCA--TATAACTGG-------G---TTTTTTTTTTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       103951 155 -   1987038 GATATGCTCAATAAATACCTTATTAGTGTCAGATGT---CCAATTCCACAT--GTTATTAAATTATATCCCTGTTACTCAG--AAGTATGGTTT-CAACTTATTCGTCCTAGCCAAGTTCATC---AAGC----TTACTTGTTTTAGCA--TATAACTGG-------G---TTTTTTTTTTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21185475 155 -  24206276 GATATGCTCAATAAATACCTTATTAGTGTCAGATGT---CCAATTCCAC----GTTATTAAATTATATCCCTGTTACTCAG--AGGTATGGTTT-CAACTTATTCATCCTAGCCAAGTTCATCAAGAAG--------CTTGTTTTAGCA--TATAACTGG-------GTTTTTTTTTTTTTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       127252 155 -   1397330 GATATGCTCAATAAATACCTCATTAGTGTCAGATGT---CCAATTCCAC----GTTATTAAATTATATCCCTGTTACTCAG--AAGTATGGTTT-CAACTTATTCGTCCTAGCCAAGTTCATCAAGAAGC----TTACTTGTTTTAGCA--TATAACTGG-------G----TTTTTTTTTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       125726 158 -   1784207 GATACGCTCAATAAATACCTTATTAGTGTCAGATGT---CCAATTCCACAT--GTTATTAAATTATATCCCTgttactcag--aggtatggttt-caacttattcgtcctagccaagttcatcaagaagc----tTACTTGTTTTAGCA--TATAACTGG-------G---GTTTTTTTTTT
i colAng1.NW_012117110v1    C 0 M 1160
s calJac3.chr6               22331536 161 + 158406734 GATATGCTCAATAAATAACTTATTAGtgacagatgt---ccaattacacacaggttattaaattatatcactgttactcag--aggcatgtttt-caacttattcatcctaaccaagttccacaagaagcttatttactcattttagca--cataactgt-------g------ttattttt
i calJac3.chr6              C 0 I 3
s saiBol1.JH378108           50566743 165 +  54856640 GATATGCTCAATAAATAACTTATTAGTGACAGATGT---CCAATTACACACAGGTTATTAAATTATATCAcagttactcag--aggcatgttttccaacttattcatcctagccaagttctacaagaagcttatttactcaTTTTAGCA--CATAACTGT-------G---TGTTTATTTTT
i saiBol1.JH378108          C 0 I 3
s cebCap1.NW_016107610v1       719292 164 -   2910086 GATGTGCTCAATAAATAACTTATTAATGACAGATGT---CCAATTACACACAGGTTATTAAATTATATCACTGTTACTCAG--AGGCATGTTTT-CATCTTATTCCTCCTAGCCAAGTTCTACAAGAAGCTTATTTACTCATTTTAGCA--CATAACTGT-------G---TTTTTATTTTT
i cebCap1.NW_016107610v1    C 0 I 4
s aotNan1.NW_018505940v1     40731172 164 +  42888418 gatatGCTCAAAAAATAACTTATTAGTGACAGATGT---CCAATTACACACAGGTTATTAAACTATATCACTGTTACTCAG--AGGCATGTTTT-CAACTTATTCATCCTAGCCAAGTTCCACAAGAACCTTTTTTACTCATTTTAGCA--CATAACTGT-------G---TTTTTATTTTT
i aotNan1.NW_018505940v1    C 0 I 3
s otoGar3.GL873530             721102 159 -  36342412 GATATGCTCAATAAATAATTTATTATTGGCAGATGT---CAGATTCTACACAGGTGATAAAATTA-----CTGGTAGTCAG--AAATACATTTT-CAACTTACTCATCCTAACCAAATTCACCAAGAAGCTTATTTACACATTTTAGCA--TGTAACTCA-------T---TTTTTTTTCTT
i otoGar3.GL873530          C 0 I 3
s canFam3.chr3               54484920  74 +  91889043 gATAGGCTCA------------------------------------------------------------------------------------------------TCCCAGTCAAGTTCACTAAGAAGCTCATTTACTTG-TTTAGCACTTCTACCTGG-------A---GGTTTTTCTG-
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1937219 159 +   3943991 GATATGCTTGATAAATAACTTATTAGTGACAGATGTTCCCTAATTCCATTTGATTCATTTAATCAT-----TGTTACTCAGTAATATATACTTT-CAACTTATTCATCCTAGTCAAGTTCACCAAAAAGCTTA-TTACTGGTTTTAGCA--CA-AACTGG-------A---ATTGTTTG---
i dasNov3.JH570731          I 607 C 0
e mm10.chr7                  81439595 736 + 145441459 I

a score=1103935.000000
s hg38.chr15_KI270850v1_alt    423303 130 +    430880 CCATCTATGGTTCAGAAG-TATCACTCATAAC-TTTTTCTTTAAAAATCTGAA--CCACACTTTGTAGA------TATGTTT-----------------------------------------------------------GCTA--------------------AAGATCCCCAAATTTTATATTT-ATTTG-TA---TAGAAGAAATGAACAATTGTCTAAT
s panTro5.chr15              63575790 130 +  83230942 CCATCTGTGGTTCGGAAG-TATCACTCATAAC-TTTTTCTTTAAAAATCTGAA--CCACACTTTGTAGA------TATGTTT-----------------------------------------------------------GCTA--------------------AAGATCCCCAAATTTTATATTT-ATTTG-TA---TAGAAGAAATGAACAATTGTCTAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80532732 130 +  99763055 CCATCTGTGGTTCGGAAG-TATCACTCATAAC-TTTTTCTTTAAAAATCTGAA--CCACACTTTGTAGA------TATGTTT-----------------------------------------------------------GCTA--------------------AAGATCCCCAAATTTTATATTT-ATTTG-TA---TAGAAGAAATGAACAATTGTCTAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       132885 131 -   1709092 CCATCTGTGGTTCAGAAG-TATCACTCATAAC-TTTTTCTTTAAAAATCTGAA-CCCACACTTTGTAGA------TATGTTT-----------------------------------------------------------GCTA--------------------AAGATCCCCAAATTTTATATTT-ATTTG-TA---TAGAAGAAATGAACAATTGTCTAAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17294831 137 - 121039945 CCATCTGTGGTTCGGAAG-TATCACTCACAAC-CTTTTCTTTAAAAATCTGAA-CCTACACTTTGTAGA------TGTGTTT-----------------------------------------------------------GCTA----AAG---------AAT-AAGATCCCCAAATTTTATATTT-ATTTG-TA---TAGAAGAAATGAACAATTATCTAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60968797 133 + 169600520 TCATCTGTGGTTCAGAAG-TATCACTCATAAC-CTTTTCTTTAAAAATCTGAA-CCCTCACTATGTAGA------CATGTTT-----------------------------------------------------------GTTA----AAG---------AAT-AAGATCCCCAAATTTTATACTT-ATTTG-TA---TAGAAAAAATGTACAAT----TAAT
i rheMac8.chr7              C 0 I 323
s macFas5.chr7              108495534 133 - 171882078 TCATCTGTGGTTCAGAAG-TATCACTCATAAC-CTTTTCTTTAAAAATCTGAA-CCCTCACTATGTAGA------CATGTTT-----------------------------------------------------------GTTA----AAG---------AAT-AAGATCCCCAAATTTTATACTT-ATTTG-TA---TAGAAAAAATGTACAAT----TAAT
i macFas5.chr7              C 0 I 309
s macNem1.NW_012011945v1       112051 133 -   2311642 TCATCTGTGGTTCAGAAG-TATCACTCATAAC-CTTTTCTTTAAAAATCTGAA-CCCTCACTATGTAGA------CATGTTT-----------------------------------------------------------GTTA----AAG---------AAT-AAGATCCCCAAATTTTATACTT-ATTTG-TA---TAGAAAAAATGTACAAT----TAAT
i macNem1.NW_012011945v1    C 0 I 295
s cerAty1.NW_012002657v1       104106 133 -   1987038 CCATCTGTGGTTCAGAAG-TATCACTCATAAC-CTTTTCTTTAAAAATCTGAA-CCCTCACTATGTAGA------CATGTTT-----------------------------------------------------------GTTA----AAG---------AAT-AAGATCCCCAAATTTTATACTT-ATTTG-TA---TAGAAAAAATGTACAAT----TAAT
i cerAty1.NW_012002657v1    C 0 I 321
s chlSab2.chr29              21185630 133 -  24206276 TCATCTGTGGTTCAGAAG-TATCACTCATAAC-CTTTTCTTTAAAAATCTGAA-CCCTCACTATGTAGA------CATGTTT-----------------------------------------------------------GTTA----AAG---------AAT-AAGATCCCCAAATTTTATACTT-ATTTG-TA---TAGAAAAAATGTACAAT----TAAT
i chlSab2.chr29             C 0 I 313
s manLeu1.NW_012106908v1       127407 133 -   1397330 CCATCTGTGGTTCAGAAG-TATCACTCATAAC-CTTTTCTTTAAAAATCTGAA-CCCTCACTATGTAGA------CATGTTT-----------------------------------------------------------GTTA----AAG---------AAT-AAGATCCCCAAATTTTATACTT-ATTTG-TA---TAGAAAAAATGTACAAT----TAAT
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22331700 139 + 158406734 ccatctgtggttcagaagttatcactcgtaac-tttttctttaaaaatatgaa-cccacgctatgtaga------tatgttt-----------------------------------------------------------gcta----gata--------aat-aaaaacccccaaatttacactt-atttg-ta---tagaagaaatgtacgattatctaat
i calJac3.chr6              I 3 C 0
s saiBol1.JH378108           50566911 140 +  54856640 CCATCTGTGGTTCGGAAGTTATCACTCATAACTTTTTTCTTTAAAAATATGAA-CCCACGCTATGTAGA------TATGTTT-----------------------------------------------------------GCTA----CATA--------AAT-AAAAACCCCAAAATTTATACTT-ATTTG-TA---TAAAAGAAATGTATGACTGCCTAAT
i saiBol1.JH378108          I 3 C 0
s cebCap1.NW_016107610v1       719460 140 -   2910086 CCATCTGTGGTTCGGAAGTTATCACTCATAAC-TTTTTCTTTAAAAATATGAA-CCCACACTATGTAGG------TGTGTTT-----------------------------------------------------------GCTA----GATA--------AATAAAAAACCCCAAAATTTATACGT-ATTTG-TA---TAGAGGAAATGTACGATGGTCTAAT
i cebCap1.NW_016107610v1    I 4 C 0
s aotNan1.NW_018505940v1     40731339 136 +  42888418 CCATCTGTGGTTCAGAAGTTATCACTCATAAC-TTTTTCTTTAAAAATATGAA-CCCATGCTACGTAGA------TATGCTT-----------------------------------------------------------GCTA----GAC-------------AAAAACCCCAAAATTTATACTTAATTTG-TA---TAGAAGAAATGTACGATTGTCTAAT
i aotNan1.NW_018505940v1    I 3 C 0
s otoGar3.GL873530             721264 203 -  36342412 ACATTTGTGTTTTAAAAC-TATCAC----AAC-TTTTTCTTTAAAAATCTGAATTCCAggctgggtgcagtggctcatgcctatagcctataatcctaacactctaggataccaagggaggtggactgcctgagctcaggagttc----aagaccagcctgagc-aaga--ctgagacctcatctct-actagaaa---tagaaaaactaaccagg----tatt
i otoGar3.GL873530          I 3 I 4
s canFam3.chr3               54484994 130 +  91889043 -CATTTGTGGCTTGAAGC-TATCACTCATTAA-C---TCTTTAAAAATCTGAA-CCCGTATCATCTAGC------TAGGTTT-------------------TTCTA-----------------------------------CTTA----TAG---------ACT-AAGATCCCCAAATTTTATACTT-ATTTG-TA---TActagaattgcctaat--------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1937378 144 +   3943991 -CATCTATGGTTTGACAC-TATCACCCATAAT-TCCTTCTTTAAAAATCTGAG-CACAAACCATGGGGT-----TTATGTTT-----------------------------------------------------------GCTAATTAAAG---------AAT-AAGATCCTAAAATTTaatactt-gcttg-tatgctagaataaaactagaattgcctaat
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81439595 736 + 145441459 I
e colAng1.NW_012117110v1       125884 1160 -   1784207 M

a score=308978.000000
s hg38.chr15_KI270850v1_alt    423433 29 +    430880 TTGGAAACC--TTGGCCCTGCCTTTAAATAT
s panTro5.chr15              63575920 29 +  83230942 TTggaaacc--ttcgccctgcctttaaatat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80532862 29 +  99763055 TTggaaacc--ttcgccctgcctttaaatat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       133016 29 -   1709092 TTAGaaacc--ttggccctgcctttaaatat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17294968 29 - 121039945 TTggaaacc--ttggccctgcctttaaatat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60969253 29 + 169600520 TTggaaacc--ttggccctgcctttaaatat
i rheMac8.chr7              I 323 C 0
s macFas5.chr7              108495976 29 - 171882078 TTGGAAACC--TTGGCCCTGCCTTTAAATAT
i macFas5.chr7              I 309 C 0
s macNem1.NW_012011945v1       112479 29 -   2311642 TTggaaacc--ttggccctgcctttaaatat
i macNem1.NW_012011945v1    I 295 C 0
s cerAty1.NW_012002657v1       104560 29 -   1987038 TTggaaacc--ttggccctgcctttaaatat
i cerAty1.NW_012002657v1    I 321 C 0
s chlSab2.chr29              21186076 29 -  24206276 TTGGAAACC--TTGGCCCTGCCTTTAAATAT
i chlSab2.chr29             I 313 C 0
s manLeu1.NW_012106908v1       127540 29 -   1397330 TTggaaacc--ttggccctgcctttaaatat
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22331839 29 + 158406734 ttggaaacc--ttggccttgtctttaaatat
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50567051 29 +  54856640 TTggaaacc--ttggccttgcctttaaatat
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       719600 29 -   2910086 TTCGAAATC--TTGGCCTTGCCTTTAAATAT
i cebCap1.NW_016107610v1    C 0 I 422
s aotNan1.NW_018505940v1     40731475 29 +  42888418 TTggaaacc--ttggccttgcctttaaatat
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             721471 30 -  36342412 -caggcacctatagacccagctactagagag
i otoGar3.GL873530          I 4 I 11
s canFam3.chr3               54485124 29 +  91889043 ttggaaatc--caagccttgccttcagatac
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1937522 28 +   3943991 ttgaaaacc--ct-atcctacctttggatac
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81439595 736 + 145441459 I
e colAng1.NW_012117110v1       125884 1160 -   1784207 M

a score=559705.000000
s hg38.chr15_KI270850v1_alt    423462  59 +    430880 CATACTCCCCAGACCCAGCATTGTGA-------------TAGGATGGCC---------------------------------------------------ATTC----------------------------------TGGCAGCTCAAAATCTTTA
s panTro5.chr15              63575949  59 +  83230942 catactccccagacccagcattgtga-------------taggatggcc---------------------------------------------------attc----------------------------------tggcagctcaaaatcttta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80532891  59 +  99763055 catactccccagacccagcattgtga-------------taggatggcc---------------------------------------------------attc----------------------------------tggcagctcaaaatcttta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       133045  59 -   1709092 catactccccagacccagcattgtga-------------taggatggcc---------------------------------------------------attc----------------------------------tggcagctcaaaatcttta
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17294997  59 - 121039945 catactccccagacccagcattgtga-------------taggatggcc---------------------------------------------------atac----------------------------------tggcagctcaaaatcttta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60969282  59 + 169600520 catactccccagacccagcactgtga-------------taggatggcc---------------------------------------------------attc----------------------------------tggcagctgaaaatcttga
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108496005  59 - 171882078 CATACTCCCCAGACCCAGCACTGTGA-------------TAGGATGGCC---------------------------------------------------ATTC----------------------------------TGGCAGCTGAAAATCTTGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       112508  59 -   2311642 catactccccagacccagcactgtga-------------taggatggcc---------------------------------------------------attc----------------------------------tggcagctgaaaatcttga
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       104589  59 -   1987038 catactccccagacccagcactgtga-------------taggatggcc---------------------------------------------------attc----------------------------------tggcagctcaaaatcttga
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21186105  59 -  24206276 CATACTCCCCAGACCCAGCACTGTGA-------------TAGGATGGCC---------------------------------------------------ATTC----------------------------------TGGCAGCTCAAAATCTTGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       127569  59 -   1397330 catactccccagacccagcactgtga-------------taggatggcc---------------------------------------------------attc----------------------------------tggcagctcaaaatcttga
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22331868  59 + 158406734 catactcccaagacccagcattgtga-------------tgggatggcc---------------------------------------------------attc----------------------------------tggcagcttaaaatcctga
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50567080  59 +  54856640 catactcccaagacccagcattgtga-------------tgggatggcc---------------------------------------------------attc----------------------------------tggcagcttaaaatcctga
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       720051  59 -   2910086 CAtactcccaagacccagcattgtga-------------tgggatgacc---------------------------------------------------attc----------------------------------tggcagcttaaaatcctga
i cebCap1.NW_016107610v1    I 422 C 0
s aotNan1.NW_018505940v1     40731504  59 +  42888418 cctactcccaagacccagtattgtga-------------tgggatggcc---------------------------------------------------attc----------------------------------tggcagcttaaaatcctga
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             721512 157 -  36342412 agaactgctcaagcccaggagtttgaggttgctatgagctatgatgccctggcactctaccaagggtgacagagagagacactctcaaaaaaaaaCCTGAATTCCACACCACATAGATATGTTTTCCTGGTTCAAGTATAGTATCCCAAAATTTTAA
i otoGar3.GL873530          I 11 I 135
s canFam3.chr3               54485153  58 +  91889043 catacaacccagcatcaatacggtga-------------tagtacagcc---------------------------------------------------atgc----------------------------------t-ttaggtcaaaatcctgg
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1937550  64 +   3943991 cacacgccccaggcgcaacaaggtga--------agagatggaatggcc---------------------------------------------------attc----------------------------------cttcaggtcaaactcctgg
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81439595 736 + 145441459 I
e colAng1.NW_012117110v1       125884 1160 -   1784207 M

a score=1977203.000000
s hg38.chr15_KI270850v1_alt    423521 198 +    430880 CTTGGGGATACTCA-CCTGTCGTAAATGAATGCCAA--CTATCATCTCTGGGTTGATTTTTATTCAGTTTGCCTTTAATGGACAACATAATACCAATGCTGAAGA-CCCTTCAAG----------ACTATTACTATTAATCATGTACAATGG--ATT-----AATAGCCAGTTGAGAAATTTATAGAAGACTG-TTTGAAGGGCCCAAGGTTTACTCAGT
s panTro5.chr15              63576008 195 +  83230942 tttggggatactcaccctgtcgtaaatgaatgccaa--ctaccatctctggg----tttttactcagtttgcctttaatcgacaacataataccaatgctgaaga-cccttcaag----------actattactattaatcatgtacaatgg--att-----aatagccagttgagaaatttatagaagactg-tttgaagggcccaaggtttactcagt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80532950 194 +  99763055 tttggggatactca-cctgtcgtaaatgaatgccaa--ctaccatctctggg----tttttactcagtttgcctttaatcgacaacataataccaatgctgaaga-cccttCAAG----------ACTATTACTATTAATCATGTACAATGG--ATT-----AATAGCCAGTTGAGAAATTTATAGAAGACTG-TTTGAAGGGCCCAAGGTTTACTCAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       133104 198 -   1709092 tttggggatactca-cctgtcgtaaatgaatgccaa--ctaccatctctgggttgatttttattcagtttgcctttaatcgacaacataataccaatgctgaaga-cccttcaag----------actattactattaatcatgtacaatgg--att-----aacagccagttgagaaatttatagaagactg-tttgaagggcccaaggtttattcagt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17295056 198 - 121039945 tctggggatactca-cctgtcgtaaatgaatgccaa--ctaccatctctgggttgatttttattcagtctgcctttaatcgacaacataataccaatgctgaaga-cccttcaag----------actattactattaatcatgtacaatgg--att-----aatagccagttgagaaatttatagaagactg-tttcaagggcccaaggtttactcagt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60969341 198 + 169600520 tttggggatactca-tctgtcgtaaatgaatgccag--ctaccatctctgggttgatttttattcagtttgcctttaattgacaacataataccaatgctgaaga-tccttcaag----------actattactattaatcatgtacaatgg--att-----aacagctagttgagaaatttatagaagactg-tttgaagggcCCAAGGTTTACTGAGT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108496064 198 - 171882078 TTTGGGGATACTCA-TCTGTCGTAAATGAATGCCAG--CTACCATCTCTGGGTTGATTTTTATTCAGTTTGCCTTTAATTGACAACATAATACCAATGCTGAAGA-TCCTTCAAG----------ACTATTACTATTAATCATGTACAATGG--ATT-----AACAGCTAGTTGAGAAATTTATAGAAGACTG-TTTGAAGGGCCCAAGGTTTACTGAGT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       112567 198 -   2311642 tttggggatactca-tctgtcgtaaatgaatgccag--ctaccatctctgggttgatttttattcagtttgcctttaattgacaacataataccaatgctgaaga-tccttcaag----------actattactattaatcatgtacaatgg--att-----aacagctagttgagaaatttatagaagactg-tttgaagggcCCAAGGTTTACTGAGT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       104648 198 -   1987038 tctggggatactca-tctgtcgtaaatgaatgccaa--ctaccatctctgggttgatttttattcagtttgcctttaattgacaacataataccaatgctgaaga-tccttcaag----------actattactattaatcatgtacaatgg--att-----aacagctagttgagaaatttatagaagactg-tttgaagggcccaaggtttactcagt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21186164 198 -  24206276 TTTGGGGATACTCA-TCTGTCGTAAATGAATGCCAA--CTACCATCTCTGGGTTGATTTTTATTCAGTTTGCCTTTAATTGACAACATAATACCAATGCTGAAGA-TCCTTCAAG----------ACTATTACTATTAATCATGTACAATGG--ATT-----AACAGCTAGTTGAGAAATTTATAGAAGACTG-TTTGAAGGGCCCAAGGTTTACTCAGT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       127628 198 -   1397330 tctggggatactca-tctgtcgtaaatgaatgccaa--ctaccatctctgggttgatttttattcagcttgcctttaattgacaacataataccaatgctgaaga-tccttcaag----------actattactattaatcatgtacaatgg--att-----aacagctagttgagaaatttatagaagactg-tttgaagggcccaaggtttactcagt
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22331927 203 + 158406734 tttggggatactca-cttgtcgtaaatgaatgccaa--ctaccatctctgggttgatttttattcactttgcctttaatcaacaacataatatcaaccctgaagaccccttcaag----------actattactattaattatgtacaactg--attgctt-aaaagccagttgagaaatttacaaaagactg-tttgaggggcccaaggtttatgcact
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50567139 204 +  54856640 tttggagatactca-cttgtcgtaaacgaatgtcaa--ctaccatctatgggttgatttttattcactttgcctttagtcaacaacataatgccaaccctgaaaaccccttcaag----------actattagtattaattatgtacaactg--attccttaaaaagccagttgagaaatttataaaagactg-tttgaagggcCCAAGGTTTATGGACT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       720110 204 -   2910086 tttggggatactca-cttgtcgtaaatgaatgccaa--ctaccatctctgggttgatttttattcactttgcctttagtcaactacataataccaaccctgaagaccccttcaag----------aCTATTACTATTAATTATGTACAACTG--ATTCCTT-AAAAGCCAGTTGAGAAATTTATAAAAGACTGTTTTGAAGGGCCCAAGGTTTATGCACT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40731563 198 +  42888418 tttggggatactca-cttgtcgtaaatgaacgccaa--ctaccatctctgggttgatttttattcactttgcctttaatcaacaacataataccaaccctgaagactccttcaag----------actattactattaactatgtacaactg--attcatt-aaaagccagttgagaaattt-----agactg-tttgaagggcctaaggtttatgcact
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             721804 202 -  36342412 tttggggatattca-cccatcataaatgaatgccaactctaccgtctctgggctgattttgattcagtttgcttttaatcaataccacagtatcaacactGA----TTCTGCCAATCATCTGCTCACTCATCTCACTGATTCTGC-CAATTC--ATC-----AAACACCAGTTATGGGATGATGAAAGATTTG-TGTGAAAGGCACACAGTTTAC----T
i otoGar3.GL873530          I 135 C 0
s canFam3.chr3               54485211 200 +  91889043 tctggggatatctg-atggtcataaatgaatgccaagtctaccacctctgggttgataatagttcagtttgccattagtcaaaaacacaacacctatattgcagaccccttcaag----------actattcctattagccatttactatgttcatg-----aaaagtcagttgagagatttatggaatacta-tctgaaggatatacagtttattc---
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1937614 184 +   3943991 tttaggaatacaca-actgtcataaatgaatgccaactctaccatccctgggttgatttttaTT--GTTTTCATTTACTCAACACT------TCTACATTACAGGCTCATTTAAG----------ACT------GCTAATCATCCACTACAA--AGTTATC-AAAAGTCAGCTGGGAGATTTATATAAG-----TTTAACAGGCACAAAAGTTACTT---
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81439595 736 + 145441459 I
e colAng1.NW_012117110v1       125884 1160 -   1784207 M

a score=1150747.000000
s hg38.chr15_KI270850v1_alt    423719 128 +    430880 CCTCCAGA-GAGAGTTCTAAAACTGGGGTCCCATGGATTGGAATGTAGTAA--------------TCCTCCTGAC-AAAAAT--GTGTTCACACTAAAAATTTTTCTGAAGTA--TTTTTCCTCCATTTAATC--AGATGGTTT----T-TAAAT
s panTro5.chr15              63576203 128 +  83230942 cctccaga-gagagttctaaaACTGGGGTCCCATGGATTGGAATGTAGTAA--------------TCCTCCTGAC-AAAAAT--GTGTTCACACTAAAAATTTTTCTGAAGTA--TTTTTCCTCCATTTAATC--AGATGGTTT----T-TAAAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80533144 128 +  99763055 CCTCCAGA-GAGAGTTCTAAAACTGGGGTCCCATGGATTGGAATGTAGTAA--------------TCCTCCTGAC-AAAAAT--GCGTTCACACTAAAAATTTTTCTGAAGTA--TTTTTCCTCCATTTAATC--AGATGGTTT----T-TAAAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       133302 128 -   1709092 cctccaga-gagagttctaaaACTGGGGTCCCATGGATTGGAATGTAGTAA--------------TCCTCCTGAC-AAAAAT--GTGTTCACACTAAAAATTTTTCTGAAGTA--TTTTTTCTCCATTTAATC--AGATGGTTT----T-TAAAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17295254 128 - 121039945 cctccaga-gagtgttctaaaACTGGGGTCTCATGGACTGGAATGCAGTAA--------------TCCTCCTGAC-AAAAAT--GTGTTCACACTACAAATTTTTCTCAAGTA--TTTTTTCTCCATTTAATC--AGATGTTTT----T-TAAAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60969539 131 + 169600520 CCCCCAGA-GAGAGTTCTAAAACTGGGGTCAAATGGATCGGAGTGTAGTAA--------------TCTTCTTGACAAAAAAT--GTGTTTACATGAAAAATTTTTCTGAAACATTTTTTTTCTCCATTTAATC--AGATGTTTT----T-TAAAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108496262 131 - 171882078 CCCCCAGA-GAGAGTTCTAAAACTGGGGTCAAATGGATCGGAGTGTAGTAA--------------TCCTCTTGACAAAAAAT--GTGTTTACATGAAAAATTTTTCTGAAACATTTTTTTTCTCCATTTAATC--AGATGTTTT----T-TAAAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       112765 131 -   2311642 CCCCCAGA-GAGAGTTCTAAAACTGGGGTCAAATGGATCGGAGTGTAGTAA--------------TCCTCTTGACCAAAAAT--GTGTTTACATGAAAAATTTTTCTGAAACATTTTTTTTCTCCATTTAATC--AGATGTTTT----T-TAAAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       104846 131 -   1987038 cctccaga-GAGAGTTCTAAAACTGGGGTCAAATGGATCGGAGTGTAGTAA--------------TCCTCTTGACAAAAAAT--GTGTTTACATGAAAATTTTTTCTGAAACATTTTTTTTCTCCATTTAATC--AGATGTTTT----T-TAAAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21186362 130 -  24206276 CCTCCAGA-GAGAGTTCTAAAACTGGGGTCAAATGGATCAGAGTGTAGTAA--------------TCCTCTTGACAAAAAAT--GTGTTTACACAAAAAATTTTTCTGAAACA-TTTTTTTCTCCATTTAATC--AGATGTTTT----T-TAAAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       127826 131 -   1397330 cctccaga-gagagttctaaaACTGGGGTCAAATGGATCGGAGTGTAGTAA--------------TCCTCTTGACAAAAAAT--GTGTTTACATGAAAATTTTTTCTGAAACATTTTTTTTCTCCATTTAATC--AGATGTTTT----T-TAAAT
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22332130 128 + 158406734 actccaga-gagagttctaaaACTGGGGTCCCATGGATTGGAATGTAGTGA--------------TCCTCCTGAC-AAAAAT--GTGTTCACACTTGAAACTTTTCTAAAATA--TTTTTTCTTCATTTAATC--AGATGTTTT----T-TAAAC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50567343 130 +  54856640 GCTCCAGA-GAGAGTTCTAAAACTGGGGTCCCATGGATTGGAATGTAGTGA--------------TCCTCCTGAC-AAAAAT--GTGTTCACACTAAAAACTTTTCTAAAATA--TTTTTTCTTCATTTAATCCAAGACATTTT----T-TAAAC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       720314 126 -   2910086 GCTCCAGA-GAGAGTTCTAAAACTGGGGTCCCATGGATTGGAATGTAGTGA--------------TCCTCCTGAC-AAAAAT--GTGTTCATGCTAAAAACATTTCTAAAATA--TTTTT--TTAGTTTAATC--AGACGTTTT----T-TAAAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40731761 128 +  42888418 gctccaga-gagagttctaaaACTGGGGTCCCATGGATTGGAATGTAGTGA--------------TCCTCCTGAC-AAAAA---GTGTTCACACTGAAAACTTTTCTAAAATA--TTTTTTCTTCATTTAATC--AGACGTTTT----TAAAAAC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             722006 139 -  36342412 CCTCCAGA-CA--GTTTTAAAACTGGGTCCACA--GATTGTAACCTAGTAAGGCAGGTTAGTTAGTGCTCT--GC-AAAAGC--ATGTTCACGTTTACTTTTTTTTTAGAGTA-AGATTTTTTCCATTTAATC--AGGTATTTT--AAT-TAAAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81440331 120 + 145441459 cccgctga-gAGAATTTTAAACCAAAG--TCCATGAATTAGAATTTAGGAA--------------GCCTTCTAAAAAAAACT--GTATTTATGCT----TTTTTCCCTGAAGA---------TCCATTTAATT--GGTTTCTTTTTAGT-TAAAA
i mm10.chr7                 I 736 C 0
s canFam3.chr3               54485411 122 +  91889043 -ttccaga-tGGGAGTTTTAACCTGAAGTC-CACAGACTAACATCTACTAA--------------GTCTCC-AGC-AAAACT--GTATTCACCCTTGAAATTTTTTCTGAGAA--TAAGATTTTC---TAATT--AGATGTTTT----T-TACAT
i canFam3.chr3              C 0 I 4
s dasNov3.JH570731            1937798 126 +   3943991 -TTCCAAATGGGAGTTTTTAACCTGGGGTC-CACAGATGGAAATCCAGTGA--------------ACTCCCTG-C-AAAACTGAGTATTCACACTAAAAGTTTTCCAGGATAA--GTTTTTCT--ACTTAATC--AGTAATTTT----T-TAGAT
i dasNov3.JH570731          C 0 I 1199
e colAng1.NW_012117110v1       125884 1160 -   1784207 M

a score=541273.000000
s hg38.chr15_KI270850v1_alt    423847 53 +    430880 GCATTGGTCTTGAACATTTAGAC----TTT-TTTAATTAA-----GCCAGAGTAGCAGAAAGT
s panTro5.chr15              63576331 57 +  83230942 GCATTGGTCTTGAACATTTAGACTTTGTTT-TTTAATTAA-----GCCAGAGTAGCAGAAAGT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80533272 57 +  99763055 GCATTGGTCTTGAACATTTAGACTTTGTTT-TTTAATTAA-----GCCAGAGTAGCAGAAAGT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       133430 57 -   1709092 GCATTGGTCTTGAACATTTAGACTTTGTTT-TTTAATTAA-----GCCAGAGTAGCAGAAAGT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17295382 58 - 121039945 GCATTGGTCTTGAACATTTAGACTTCGTTTCTTTAATTAA-----GCCAGAGTAGCAGAAAGT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60969670 57 + 169600520 GCATTGGTCTTGAACATTTAGACTTTGTTT-TTAAATTAA-----GCCAGCGTAGCAGAAAGC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108496393 57 - 171882078 GCATTGGTCTTGAACATTTAGACTTTGTTT-TTAAATTAA-----GCCAGTGTAGCAGAAAGC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       112896 57 -   2311642 GCATTGGTCTTGAACATTTAGACTTTGTTT-TTAAATTAA-----GCCAGCGTAGCAGAAAGC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       104977 57 -   1987038 GCATTGGTCTTGAACATTTAGACTTTGTTT-TTAAATTAA-----GCCAGCGTAGCAGAAAGC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21186492 57 -  24206276 GCATTGGTCTTGAACATTTAGACTTTGTTT-TTAAATTAA-----GCCAGAGTAGCAGAAAGC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       127957 57 -   1397330 GCATTGGTCTTGAACATTTAGACTTTGTTT-TTAAATTAA-----GCCAGCGTAGCAGAAAGC
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22332258 57 + 158406734 ACATTGGTCTTGAACATTTAGACTTTGTTT-TTTAATTAA-----GCCAGAGGAGCAGAAAGT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50567473 57 +  54856640 ACATTGGTCTTGAACATTTAGACTTTGCTT-TTTAATTAA-----GCCAGAGGAGCAGAAAGT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       720440 53 -   2910086 ACATTGGTCTTGAACATTTAGACT----TT-TTAAATTAA-----GCCAGAGGAGCAGAAAGT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40731889 55 +  42888418 ATATCGGTCTTGAACATTTAGACT--GTTT-TTTAATTAA-----GCCAGTGGAGGAGAAAGT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             722145 36 -  36342412 GCATTGCTCTTGAACATTGAAACTTTTTCT-TTGGAG--------------------------
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81440451 54 + 145441459 TCATTGGTCTTGTACATTCAAACC-------TTAAAAAAAATACTGTCAAAGTAAAAGAAA--
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54485537 52 +  91889043 GCATTAATATTGAACATTCAG-----GTTT-TTTAATTAA-----GACATACCAACAGAAGGG
i canFam3.chr3              I 4 I 118
s dasNov3.JH570731            1939123 45 +   3943991 GCGTTTGTCTTGAACATT-------------TGTAATTAA-----ACCAAAGCCCTAGAAAGT
i dasNov3.JH570731          I 1199 C 0
e colAng1.NW_012117110v1       125884 1160 -   1784207 M

a score=657731.000000
s hg38.chr15_KI270850v1_alt    423900 60 +    430880 A--ATATACTT-AGATGTC-CCAAATAACTGGTTCTGCTGAGACGTACTCTGGCAATTTGCCtt
s panTro5.chr15              63576388 62 +  83230942 AATATATACTT-AGATGTC-CCAAATAACTGGTTCTGCTGAGACGTACTCTGGCAATTTGCCtt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80533329 60 +  99763055 A--ATATACTT-AGATGTC-CCAAATAACTGGTTCTGCTGAGACGTACTCTGGCAATTTGCCtt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       133487 60 -   1709092 A--ATATACTT-AGATGTC-CCAAATAACTGGTTCTGCTTAGACGTACTCTGGCAATTTGCCtt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17295440 60 - 121039945 A--ATATACTT-AGATGCC-CCAAATAACTGGTTCTGCTGAGATGTACTCTGGAAATTTGCCtt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60969727 60 + 169600520 A--ATATACTT-AGATGCC-CCAAATAACTGGTTCTGCTGAGATGTACTCTGGCAATTTGCCtt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108496450 60 - 171882078 A--ATATACTT-AGATGCC-CCAAATAACTCGTTCTGCTGAGATGTACTCTGGCAATTTGCCtt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       112953 60 -   2311642 A--ATATACTT-AGATGCC-CCAAATAACTGGTTCTGCTGAGATGTACTCTGGCAATTTGCCtt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       105034 60 -   1987038 A--ATATACTT-AGATGCC-CCAAATAACTGGTTCTGCTGAGATGTACTCTGGCAATTTGCCtt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21186549 60 -  24206276 A--ATACACTT-AGATGCC-CCAAATAACTGGTTCTGCTGAGATGTACTCTGGCAATTTGCCtt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       128014 60 -   1397330 A--ATATACTT-AGATGCC-CCAAATAACTGGTTCTGCTGAGATGTACTCTGGCAATTTGCCtt
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22332315 60 + 158406734 A--ATATACTT-AGATGCT-CCAAAGAACTGGTTCTGCTGAGATGTACTCGGGCAATTTGCCTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50567530 60 +  54856640 A--ATATACTT-AGATGCT-CCAAAGAACTGGTTCTGCTGAGATGTACTCTGGCAACTTGTATT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       720493 60 -   2910086 A--ACATACTT-AGATGCT-CCAAAGGACTGGTTCTGCTGAGATGTACTCTAGCAATTTGCCtt
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40731944 60 +  42888418 A--ATATACTT-AGATGCT-CCAAAGAACTGGTTCTGCTGAGATGTACTCTGGCAAATTGCCtt
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81440505 58 + 145441459 ---ATCTACTT-AGATGCCTCCCAAGAAC--ATTATACTGTATTGTACTTTGGCAATTTGCCTT
i mm10.chr7                 C 0 I 1278
s canFam3.chr3               54485707 58 +  91889043 G--ATATACTT-AGATGCCCCCAAAGAACTGGTT---CAGAGATGTACTTTGGCAATTTGCTTT
i canFam3.chr3              I 118 C 0
s dasNov3.JH570731            1939168 41 +   3943991 A--ATACACTTAAGATGCC-CCAAAGAACTG--------------------GGCAATTTGCCTT
i dasNov3.JH570731          C 0 C 0
e otoGar3.GL873530             722181  0 -  36342412 C
e colAng1.NW_012117110v1       125884 1160 -   1784207 M

a score=12376.000000
s hg38.chr15_KI270850v1_alt    423960 1 +    430880 t
s panTro5.chr15              63576450 1 +  83230942 t
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80533389 1 +  99763055 t
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       133547 1 -   1709092 t
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17295500 1 - 121039945 t
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60969787 1 + 169600520 t
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108496510 1 - 171882078 t
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       113013 1 -   2311642 t
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       105094 1 -   1987038 t
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21186609 1 -  24206276 t
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       128074 1 -   1397330 t
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22332375 1 + 158406734 T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50567590 1 +  54856640 T
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       720553 1 -   2910086 t
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40732004 1 +  42888418 t
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54485765 1 +  91889043 T
i canFam3.chr3              C 0 I 292
s dasNov3.JH570731            1939209 1 +   3943991 T
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81440563 1278 + 145441459 I
e otoGar3.GL873530             722181 0 -  36342412 C
e colAng1.NW_012117110v1       125884 1160 -   1784207 M

a score=-33219.000000
s hg38.chr15_KI270850v1_alt    423961 4 +    430880 a-----ttt
s panTro5.chr15              63576451 8 +  83230942 a-ttttttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80533390 7 +  99763055 a--tttttt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       133548 8 -   1709092 a-ttttttt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17295501 9 - 121039945 ttttttttt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60969788 7 + 169600520 c--tttttt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108496511 7 - 171882078 c--tttttt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       113014 6 -   2311642 c---ttttt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       105095 7 -   1987038 c--tttttt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21186610 7 -  24206276 c--ttttct
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       128075 7 -   1397330 c--tttttt
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22332376 4 + 158406734 T--Ttt---
i calJac3.chr6              C 0 I 12
s saiBol1.JH378108           50567591 2 +  54856640 T--T-----
i saiBol1.JH378108          C 0 I 308
s cebCap1.NW_016107610v1       720554 4 -   2910086 t--att---
i cebCap1.NW_016107610v1    C 0 I 1
s aotNan1.NW_018505940v1     40732005 4 +  42888418 t--ttt---
i aotNan1.NW_018505940v1    C 0 I 3
s dasNov3.JH570731            1939210 4 +   3943991 -AGTT----
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81440563 1278 + 145441459 I
e canFam3.chr3               54485766 292 +  91889043 I
e otoGar3.GL873530             722181 0 -  36342412 C
e colAng1.NW_012117110v1       125884 1160 -   1784207 M

a score=68720.000000
s hg38.chr15_KI270850v1_alt    423965 8 +    430880 ttctattt
s panTro5.chr15              63576459 8 +  83230942 ttctattt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80533397 8 +  99763055 ttctattt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       133556 8 -   1709092 ttctattt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17295510 8 - 121039945 ttctattt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60969795 8 + 169600520 tcctattt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108496518 8 - 171882078 tcctattt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       113020 8 -   2311642 tcctattt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       105102 8 -   1987038 tcctattt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21186617 8 -  24206276 tcctattt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       128082 8 -   1397330 tcctattt
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22332392 8 + 158406734 ttctattt
i calJac3.chr6              I 12 C 0
s saiBol1.JH378108           50567901 8 +  54856640 ttctattt
i saiBol1.JH378108          I 308 C 0
s cebCap1.NW_016107610v1       720559 5 -   2910086 ---ttttt
i cebCap1.NW_016107610v1    I 1 C 0
s aotNan1.NW_018505940v1     40732012 8 +  42888418 ttctattt
i aotNan1.NW_018505940v1    I 3 C 0
s otoGar3.GL873530             722181 5 -  36342412 ---TAAtt
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH570731            1939214 8 +   3943991 TTATACCT
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81440563 1278 + 145441459 I
e canFam3.chr3               54485766 292 +  91889043 I
e colAng1.NW_012117110v1       125884 1160 -   1784207 M

a score=829268.000000
s hg38.chr15_KI270850v1_alt    423973  92 +    430880 ttatttttgaaacagagtctcgctctgtc------gcccagg----agtgcagtggtacaatttcggctcaccacaacctccacctcctgggttcaagcaat
s panTro5.chr15              63576467  92 +  83230942 ttatttttgaaacagagtctcgctctgtc------gcccagg----agtgcagtggtacaatttcggctcaccacaacctccgcctcctgggttcaagcaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80533405  92 +  99763055 ttatttttgaaacagagtctcgctctgtc------gcccagg----agtgcagtggtacaatttcggctcaccacaacctccgcctcctgggttcaagcaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       133564  92 -   1709092 ttatttttgacacagagtctcgctctgtc------gcccagg----agtgcagtggtacaatttcggctcaccacaacctccacctcctgggttcaagcaat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17295518  92 - 121039945 ttatttttgaaacagagtctcgctctgtt------gcccagg----agtgcaatggtacactttcggctcaccacaacctccgcctcctgggttcaagcaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60969803  92 + 169600520 ttatttttgaaacagagtctcactctgtc------gcccagg----agtgcagcggtacagtttcggctcaccgcaacctccgcctcctgggttcaagcaat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108496526  92 - 171882078 ttatttttgaaacagagtctcactctgtc------acccagg----agtgcagcggtacagtttcggctcaccgcaacctccgcctcctgggttcaagcaat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       113028  92 -   2311642 ttatttttgaaacagagtctcactctgtc------gcccagg----agtgcagcggtacagtttcggctcaccgcaacctccgcctcctgggttcaagcaat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       105110  92 -   1987038 ttatttttgaaacagagtctcactctgtc------gcccagg----agtgcagcggtacagtttcggctcaccgcaacctccgcctcctgggttcaagcaat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21186625  92 -  24206276 ttatttttgaaacagagtctcactctgtc------gcccagg----agtgcagcggtacaatttcggctcatcgcaacctccgcctcctgggttcaagcaat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       128090  92 -   1397330 ttatttttgaaacagagtctcactctgtc------gcccagg----agtgcagcggtacagtttcggctcaccgcaacctccgcctcctgggttcaagcaat
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22332400 101 + 158406734 ttatttttgaaacagagtcttgctctgcctctgctgcccaggctgaagtgcagtggtgtaatttcggctcaccac-acctctgcctcccgagttcaagcaat
i calJac3.chr6              C 0 I 109
s saiBol1.JH378108           50567909  96 +  54856640 ttatttttaaaacagagtcttgctctgcc------acccaggctgaagtgcagtgatataatttcggctcactgcaacctctgcctcccgggttcaggcaat
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       720564  96 -   2910086 ctatttttgaaacagagtcttgccctgct------gcccaggctgaagtgcagtggtataatttcggctcaccgcagcctttgcctcccaagttcaagcaat
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40732020  96 +  42888418 ttatttttgaaacagagtcttgctctgct------gcccaggctgaagggcagtggtgtaattttggcttaccgcaacctctgcttcccaggtccaagcaat
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             722186  94 -  36342412 tttttttaaaggttgggtctcgttctgtt------acccaggttggagtgcagtggcactaccacagttcactacagtgttaa--tcctgggctcaagcaat
i otoGar3.GL873530          C 0 I 1
e mm10.chr7                  81440563 1278 + 145441459 I
e dasNov3.JH570731            1939222   0 +   3943991 C
e canFam3.chr3               54485766 292 +  91889043 I
e colAng1.NW_012117110v1       125884 1160 -   1784207 M

a score=364749.000000
s hg38.chr15_KI270850v1_alt    424065 45 +    430880 tctggtgcctatgcctcctgagtagctgggactacaggcatgtgt
s panTro5.chr15              63576559 45 +  83230942 tctggtgcctatgcctcctgagtagctgggactacaggcatgtgt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80533497 45 +  99763055 tctggtgcctatgcctcctgagtagctgggactacaggcatgtgt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       133656 45 -   1709092 tctggtgcctatgcctcctgagtagctgggactacaggcacgtgt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17295610 45 - 121039945 tctcgtgcctatgcctcctgagtagctgggactacaggcacgtgc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60969895 45 + 169600520 tctcctgcctactcctaacgaatagctgggactacaggcacgtgc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108496618 45 - 171882078 tctcctgcctactcctaacaaatagctgggactacaggcacgtgc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       113120 45 -   2311642 tctcctgcctactcctgacgaatagctgggactacaggcacgtgc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       105202 45 -   1987038 tctcgtgcctactcctaacgaatagctgggactacaggcacgtgc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21186717 45 -  24206276 tctcgtgcctactcctaacgagtagctgggactacaggcacgtgc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       128182 45 -   1397330 tctcgtgcctactcctaacgaatagctgggactacaggcacgtgc
i manLeu1.NW_012106908v1    C 0 C 0
s calJac3.chr6               22332610 45 + 158406734 tctcatgcctcagcctctggagtagctgggactacaggcacgtac
i calJac3.chr6              I 109 C 0
s saiBol1.JH378108           50568005 45 +  54856640 tctcatgcctcagcctcccgagtagctgggactacaggcacgtgc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       720660 45 -   2910086 tctcatgcctcagcctcccaagtagctgggaccataggcatgtgc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40732116 45 +  42888418 tctcatgcctcagcctcctgagtagctgggactacaggcacgtgc
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             722281 45 -  36342412 tttcctacttcagcctccccaaatgctgggattacaggcataagc
i otoGar3.GL873530          I 1 C 0
e mm10.chr7                  81440563 1278 + 145441459 I
e dasNov3.JH570731            1939222  0 +   3943991 C
e canFam3.chr3               54485766 292 +  91889043 I
e colAng1.NW_012117110v1       125884 1160 -   1784207 M

a score=127639.000000
s hg38.chr15_KI270850v1_alt    424110 13 +    430880 ca-ccacacccagc
s panTro5.chr15              63576604 13 +  83230942 ca-ccacacccagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80533542 13 +  99763055 ca-ccacacccagc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       133701 13 -   1709092 ca-ccacacccagc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17295655 13 - 121039945 ca-ccacacccagc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60969940 13 + 169600520 ca-ccacacctggc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108496663 13 - 171882078 ca-ccacacctggc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       113165 13 -   2311642 ca-ccacacctggc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       105247 13 -   1987038 ca-ccacacctggc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21186762 13 -  24206276 ca-ccacacccagc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       128227 13 -   1397330 ca-ccacacctggc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       127073 13 -   1784207 ca-ccacgcccggc
i colAng1.NW_012117110v1    M 1160 C 0
s calJac3.chr6               22332655 14 + 158406734 cacccacacccatt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50568050 13 +  54856640 ca-ccacacccacc
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       720705 13 -   2910086 ca-ccacacccacc
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40732161 13 +  42888418 ca-acacacccacc
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             722326 13 -  36342412 ca-ccatacccagc
i otoGar3.GL873530          C 0 I 667
e mm10.chr7                  81440563 1278 + 145441459 I
e dasNov3.JH570731            1939222  0 +   3943991 C
e canFam3.chr3               54485766 292 +  91889043 I

a score=1446197.000000
s hg38.chr15_KI270850v1_alt    424123 154 +    430880 taa-ttttttatatttttagtagagatggggtttcgccatgttggccaggctggtctcaaactcctgacctcaggtgatccg-cccgcctcagcctcccaaagtgctgggattacaggcatgagccac-atgcctggccTGCCTTTAGTTTTATACC
s panTro5.chr15              63576617 154 +  83230942 taa-ttttttatatttttagtagagatggggtttcgccatgttggccaggctggtctcaaactcctgacctcaggtgatcca-cccgcctcagcctcccaaagtgctgggattacaggcatgagccac-atgcctggccTGCCTTTAGTTTTATACC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80533555 154 +  99763055 taa-ttttttatatttttagtagagatggggtttcgccatgttggccaggctggtctcaaactcctgacctcaggtgatcca-cccgcctcagcctcccaaagtgctgggattacaggcatgagccat-atgcctggccTGCCTTTAGTTTTATACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       133714 154 -   1709092 taa-ttttttatatttttagtagagatggggtttcgccatgttggccaggctggtctcaaactcctgacctcaggtgatccg-cccgcctcaccctcccaaagtgctgggattacaggcatgagccac-atgtctggccTGCCTTTAGTTTTATACC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17295668 155 - 121039945 taatttttttatatttttagtagagatggggtttcgccatgttggacaggctggtctcaaactcctgacctcaggtgatccg-cccgcctcggcctcccaaagtgctgggattacaggcatgagccac-aagcctggccTGCCTTTAGTTTTATACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60969953 152 + 169600520 taa-ttttttatatttttagtagagatggggtttcgccatgttggccaggctggtctcaaactcctgacct--ggtggtccg-cccgcctcagcctcccaaagtgctgggattacaggcatgagccac-atgcccggccTGCCTTTAGTTTTATACT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108496676 152 - 171882078 taa-ttttttatatttttagtagagatggggtttcgccatgttggccaggctggtctcaaactcctgacct--ggtggtccg-cccgcctcagcctcccaaagtgctgggattacaggcatgagccac-atgcccggccTGCCTTTAGTTTTATACT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       113178 152 -   2311642 taa-ttttttatatttttagtagagatggggtttcgccatgttggccaggctggtctcaaactcctgacct--ggtggtccg-cccgcctcagcctcccaaagtgctgggattacaggcatgagccac-atgcccggccTGCCTTTAGTTTTATACT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       105260 152 -   1987038 taa-ttttttatatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacct--ggtggtccg-cccgcctcagcctcccaaagtgctgggattacaggcatgagccac-atgcccggccTGCCCTTAGTTTTATACT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21186775 152 -  24206276 taa-ttttttatatttttagtagagatggggtttcgccatgttggccaggctagtctcaaactcctgacct--ggtggtccg-cccgcctcagcctcccaaagtgctgggattacaggcatgagccac-atgcccggccTGCCTTTAGTTTTATACT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       128240 152 -   1397330 taa-ttttttatatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacct--ggtggtccg-cccgcctcagcctcccaaagtgctgggattacaggcatgagccac-atgcccggccTGCCTTTAGTTTTATACT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       127086 153 -   1784207 taa--tttttgtatttttaggagagacgggatttcacctttttggccaggctggtctcaaactcctgacctcaggtgatcca-cccgcctcagcctcccaaagtgctgggattacaggcatgagccac-atgcccggccTGCCTTTAGTTTTATACT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22332669 154 + 158406734 -aa-ttttttacatttttagtagagatggggttttgtcatgttggccaggctggtctcaaactcctgacctcaggtgatccgccccacctaggcctcccaaagtgctgggattactggcatgagccaccgcccccagccTGCCTTTAGTTTTACAT-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50568063 152 +  54856640 ----taatttatatatttagtagagatggggttttgtcatgttggccaggctggtctcaaactcctgacctcaggtgatctgccccgcctaggcctcccgaagtgctgggattactggcatgagccactgaccccagccTGCCTTTAGTTTTACAT-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       720718 153 -   2910086 -ta-acttttatatttttagtagagatggggttttgtcatgttgaccaggctggtctcaaactcctgacctcaggtgatctgccccgcct-ggcctcccaaagtgctgggattactggcatgagccaccgcccccagccTGCCTTTAGTTTTACAT-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40732174 155 +  42888418 taa-tattttatatttttagtagagatagggttatgtcatgttggccaggctggtctcaaactcctgacctcaggtgatctgtcctgcctaggcctcccaaagtgctgggattactggcatgagccaccacccccagccTGCCTTTAGTTTTACAT-
i aotNan1.NW_018505940v1    C 0 C 0
e mm10.chr7                  81440563 1278 + 145441459 I
e dasNov3.JH570731            1939222   0 +   3943991 C
e canFam3.chr3               54485766 292 +  91889043 I
e otoGar3.GL873530             722339 667 -  36342412 I

a score=774548.000000
s hg38.chr15_KI270850v1_alt    424277 81 +    430880 AATAATAAAGCTAAACAAAATTTCTATAGCACGGATACTCAGGATTTTAGGCATATTC--TATTACGATTTTGAAGAGccctt
s panTro5.chr15              63576771 81 +  83230942 AATAATAAAGCTAAACAAAATTTCTATTGCACGGATACTGAGGATTTTAGGCATATTC--TATTACGATTTTGAAGAGccctt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80533709 81 +  99763055 AATAATAAAGCTAAACAAAATTTCTATTGCATGGATACTCAGGATTTTAGGCATATTC--TATTACGATTTTGAAGAGccctt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       133868 81 -   1709092 AATAATAAAGCTAAACAAAATTTCTATAGCATGGATACTCAGGATTTTAGGCATATTT--TATTATGATTTTGAAGAGccctt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17295823 83 - 121039945 AATAATAAAGCTAAACAAAGTTTCTATAGCATGGATACTCAGGATTTGGGGCATATTCTTTATGACGATTTTGAAGAGccctt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60970105 83 + 169600520 AATAATAAAGCTAAACAAAATTTCTATAGAGTGGATACTCAGGATTTTGGGCATATTCTTTATTACAATTTTGAAGAGCCCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108496828 83 - 171882078 AATAATAAAGCTAAACAAAATTTCTATAGAGTGGATACTCAGGATTTTGGGCATATTCTTTATTACAATTTTGAAGAGCCCTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       113330 83 -   2311642 AATAATAAAGCTAAACAAAATTTCTATAGAGTGGATACTCAGGATTTTGGGCATATTCTTTATTACAATTTTGAAGAGCCCTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       105412 82 -   1987038 AATAATAAAGCTAAA-AAAATTTCTATAGAGTGGATACTCAGGATTTGGGGCATATTCTTTATTACAATTTTGAAGAGCCCTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21186927 83 -  24206276 AATAATAAAGCTAAACAAAATTTCTATAGAGTGGATACTCAGGATTTTGGGCATATTCTTTATTACAATTTTGAAGAGCCCTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       128392 82 -   1397330 AATAATAAAGCTAAA-AAAATTTCTATAGAGTGGATACTCAGGATTTTGGGCATATTCTTTATTACAATTTTGAAGAGCCCTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       127239 83 -   1784207 AACAATAAAGCTAAACAAAATTTCTATAGAATGGATACTCAGGATTTTGGGCATATTCTTTATTACAATTTTGAAGAGCCCTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22332823 80 + 158406734 --TAATAAAGCTAAATAAAATTTCTATAGCATGGATACTTAGTATTTTGGGCATACTCTTTATTACAATTTTGAAGAG-cctt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50568215 80 +  54856640 --TAATAAAGCTAAATAAAATTTCTATAGCATGGATACTCAGTATTTTGGGCATACTCTTTATCATAATTTTGAAAAG-CCTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       720871 80 -   2910086 --TAATAAAGCTAAATAAAATTTCTATAGCATGGATCCTCAGTATTTTTGGCATACTCTTTATTACAATTTTGAAGAG-CCTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40732329 80 +  42888418 --TAATAAAGCTAAATAAAATTTCTATAGCATGGATACTCAATATTTTGGGCATACTCTTTATTACAATTTTGAAGAG-CCTT
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1939222 74 +   3943991 AATAACAAAGATAAA-AACACCTCTATAGCATTTATATGCCAAATATTGAGATTATTA--------ACTTTTGAACTGCCCTT
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81440563 1278 + 145441459 I
e canFam3.chr3               54485766 292 +  91889043 I
e otoGar3.GL873530             722339 667 -  36342412 I

a score=2368876.000000
s hg38.chr15_KI270850v1_alt    424358 230 +    430880 atatgaacactcatttagagaaatgtcattcagaccacag-atcaggaaatgctacagattcccatgaaga----atacattttccttatggaagaatgtaagtcttctagccaaatttctctatttgctttagtcac----cagctcactcaaagcc-agatttTGGCTCTACTTTAATGACTCTATAGTT-TGCTGAGAGATGCTTCTCTGTG-TTTAAATTTCTCCTTGGTCCT---------------------------ACCTC------
s panTro5.chr15              63576852 232 +  83230942 atatgaacactcatttagagaaatgtcattcagaccacag-atcaggaaatgctacagattcccatgaaga----atacattttccttatggaagaatgtaagtcttctagccaaatttctctatttactttagtcac----cagctcactcaaagcc-agattttggctctactttaatgactctatagTT-TGCTGAGAGATGCTTCTCTGTG-TTTAAATTTCTCCTTGGTCCT-------------------------ACACCTC------
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80533790 232 +  99763055 atatgaacactcatttagagaaatgtcattcagaccacag-atcaggaaatgctacagattcccatgaaga----atacattttccttatggaagaatgtaagccttctagccaaatttctctatttactttagtcac----cagctcactcaaagcc-agattttggctctactttaatgactctatagTT-TGCTGAGAGATGCTTCTCTGTG-TTTAAATTTCTCCTTGGTCCT-------------------------ACACCTC------
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       133949 230 -   1709092 atatgaacactcatttagagaaatgtcattcagaccacag-atcaggaaatgctacagattcccatgaaga----atacattttccttatggaagaatgtaagtcttctagccaaatttctctatttgctttagtcac----cagctcactcaaagcc-agattttggctctactttaatgactctatagTT-TGCTGAGAGATGCTTCTCTGTG-TTTAAATTTCTCCTTGGTCCT---------------------------ACCTC------
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17295906 226 - 121039945 atatgaacactcctttagagaagtgtcattcagaccacag-atcaggaaatgctacagattcccatgaaga----atacattttccttatggaagaatgtaagtcttctagccaaatttctctatttgctttagtcac----cagctcactcaaagcc-agatttTGGCTCTACTTCAATGACTCTATAGTT-TCCTGAGAGATGTTTCTCTGTG-TT----TTTCTCCTTGGTCCT---------------------------ACCTC------
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60970188 231 + 169600520 ATATGAACACTCATTTAGAAAAATGTCATTCAGACCACAG-ATTAGGACATGCTAAAGATTCCCATGAAGA----ATACATTTTCCTTACGGAAGAATATAAGTCTTCTAGCCAAATTTCTCTATTTGCTTTAGTCAC----CAGCTCACTCAAAGCCAAGTTTTTGGCTCTACTTTAATGACTCTATAGTT-TGCTGAGAGATGTTTCTCTGTG-TTTAACCTTCTCCTTGGTCCT---------------------------ACCTC------
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108496911 231 - 171882078 ATATGAACACTCATTTAGAAAAATGTCATTCAGACCACAG-ATTAGGACATGCTAAAGATTCCCATGAAGA----ATACATTTTCCTTACGGAAGAATATAAGTCTTCTAGCCAAATTTTTCTATTTGCTTTAGTCAC----CAGCTCACTCAAAGCCAAGTTTTTGGCTCTACTTTAATGACTCTATAGTT-TGCTGAGAGATGTTTCTCTGTG-TTTAACCTTCTCCTTGGTCCT---------------------------ACCTC------
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       113413 231 -   2311642 ATATGAACACTCATTTAGAAAAATGTCATTCAGACCACAG-ATTAGGACATGCCAAAGATTCCCATGAAGA----ATACATTTTCCTTACGGAAGAATATAAGACTTCTAGCCAAATTTCTCTATTTGCTTTAGTCAC----CAGCTCACTCAAAGCCAAGTTTTTGGCTCTACTTTAATGACTCTATAGTT-TGCTGAGAGATGTTTCTCTGTG-TTTAACCTTCTCCTTGGTCCT---------------------------ACCTC------
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       105494 231 -   1987038 ATATGAACACTCGTTTAGAAAAATGTCATTCAGACCACAG-ATTAGGACATGCTAAAGATTCCCATGAAGA----ATACATTTTCCTTATGGAAGAATATAAGTCTTCTAGCCAAATTTCTCTATTTGCTTTAGTCAC----CAGCTCACTCAAAGCCAAGTTTTTGGCTCTACTTTAATGACTCTATAGTT-TGCTGAGAGATGTTTCTCTGTG-TTTAACCTTCTCCTTGGTCCT---------------------------ACCTC------
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21187010 228 -  24206276 ATATGAATACTCATTTAGAAAAACGTCATTCAGACCACAG-ATTAGGACATG---AAGATTCCCATGAAGA----ATACATTTTCCTTATGGAAGAATATAAGTCTTCTAGCCAAATTTCTCTATTTGCTTTAGTCAC----CAGCTCACTCAAAGTCAAGTTTTTGGCTCTACTTTAATGACTCTATAGTT-TGCTGAGAGATGTTTCTCTGTG-TTTAACCTTCTCCTTGGTCCT---------------------------ACCTC------
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       128474 232 -   1397330 ATATGAACACTCGTTTAGAAAAATGTCATTCAGACCACAG-ATTAGGACATGCTAAAGATTCCCATGAAGA----ATACATTTTCCTTATGGAAGAATATAAGTCTTCTAGCCAAATTTCTCTATTTGCTTTAGTCAC----CAGCTCACTCAAAGCCAAGTTTTTGGCTCTACTTTAATGACTCTATAGTT-TGTTGAGAGATGTTTCTCTGTGTTTTAACCTTCTCCTTGGTCCT---------------------------ACCTC------
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       127322 231 -   1784207 ATATGAACACTCATTTAGAAAAATGTCATTCAGACCACAG-ATTAGGACATGCTAAAGATTCTCATGAAGA----ATACATTTTCCTCATGGAAGAAAATAAGTCTTCTAGCCAAATTTCTCTATTTGCTTTAGTCAC----TAGCTCACTCAAAGCCAAGTTTTTGGCTCTACTTTAATGACTCTATAGTT-TGCTGAGAGATGTTTCTCTGTG-TTTAACCTTCTCCTTGGTCCT---------------------------ACCTC------
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22332903 225 + 158406734 atatgagcatccctttagagaagtgtcactcagaccacag-attaggaaatgctacagcttcccatgaaga----ataagttttccttacagaagagtat-tgtcttctggtcaaatttctcta-----tttagtcac----cagctcactcaaagccaagtttttggctttactgtaatgactctatagtt-tgctgacagatgcttctctgtg-tttcactttctccttggtGCG---------------------------ACCTC------
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50568295 223 +  54856640 ATATGAGCATCCATTTAGAGAAATGTCACTCGGACCACAG-GTTAGGAAATGCTACAACTTCCCATGAAGA----ATAAGTTTTCCTTATGGAAGAGTAT-TGTCTTCTAGCCAAATTTCTCTA-----TTTAGTCAC----CAGCTCACTCAAAGCCAAGTTTTTGGCTCTACTTTAATGACTC--TAGTT-TGCTGACAGATGCTTCTCTGTG-TTTAACTTTCTCCTTGGTGCG---------------------------ACCTC------
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       720951 226 -   2910086 ATATGAGCATCCATTTAGAGAAATGCCACTCAGACCACAG-ATTAGGAAATACTACAGCTTCCC---AGGA----ATAAGTTTTCCTTACGGAAGAGTAT-TGTCTTCTAGCCAAATTTCTCTATTTACTTTAGTCAC----CACCTCACTCAAAGCCAAG-TTTTGGCTCTACTTTAATGACTCTATAGTT-TACTGACAGATGCTTCTCTGTG-TTTAACTTTCTCCTTCATGCG---------------------------ACCTC------
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40732409 230 +  42888418 ATATGAGCAACCATTTAGAGAAATGTCACTCAGACCACAG-ATTAGGAAATGCTACAGCTTCCCATGAAGA----ATAAGTTTTCCTTATGGAAGAGTAC-TGTCTTCTAGCCAAATTTCTCTATTCACTTTAGTCAC----CAGCTCACTCAAAGCCAAGATTTTGGCTCTACTTTAATGACTCTATAGTT-TGCTGACAGATGCTTCTCTGTG-TTTAACTTTCTCCTTGGTGTG---------------------------ACCTC------
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54486058 229 +  91889043 aaaaaaaCACCCACTGAGAAAAAGGTCATTCAGATCAAAG-ATTAGGAAATGCTACAGACTCACCTGAGGAACTGACAGGTTTCTTTTATGGAAGAATTTAAATCATCTGGC-----------------------------------CATTCAAAGTC-AGTTTCTGGTTGAACTTTACTGACTCTACAA-T-TGCTAAGAAATGCTTCGTTATG-TTTAATTTTCTCCTTGACCTTTACCTGTCCAATCTTAACTGAACTTCCACCTC------
i canFam3.chr3              I 292 C 0
s dasNov3.JH570731            1939296 250 +   3943991 ATATGAAAACTCACT--GGAAGATGTCAGTCAAACCTAAGAATTATAAAGTGCTACCATTTCCCCTCAGGA----TT---TTTTCCCCCCATAACAATCC---TAATCTAGCCAAGTTCCCATGTTTGCTTTGGGCACCCTTCAGGTCACTCAAAGCC-AAATTTTGGTTGAATTTAAATGACTCCACAGTTGTGATAATA-ATGCTTCTC-----TTTAACTTTCCCCTTGGTCCTTACTTATCCATTCTTAATTGA------ACCTCCACTTC
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81440563 1278 + 145441459 I
e otoGar3.GL873530             722339 667 -  36342412 I

a score=1965638.000000
s hg38.chr15_KI270850v1_alt    424588 179 +    430880 AAGTCTTCTATGCAACAATGTCAGGAATAAAAATTTATCaggttggtccatatgaaattgtcag-------tattttacct--------------ttttcaaccaacaaaatggcaatttcacatagttcaacctaaTATTATTTCGTAAATGCTGACAACCCACTAGGT-------------------------------------------------TAGATGT--------TGAGAT---------TACAGAT------------------------------------------ATGTATATAT--
s panTro5.chr15              63577084 179 +  83230942 AAGTCTTCTATGCAACAATGTCAGGAATAAAAATTTAtcaggttggtccatatgaaattgtcag-------tattttacct--------------ttttcaaccaacaaaatggcaatttcacatagttcaacctaaTATTATTTCGTAAATGCTGAcaacccactaggt-------------------------------------------------tagatgt--------tgagat---------tacagat------------------------------------------atgtatatat--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80534022 179 +  99763055 AAGTCTTCTATGCAACAATGTCAGGAATAAAAATTTAtcaggttggtccatatgaaattgtcag-------tattttacct--------------ttttcaaccaacaaaatggcaatttcacatagttcaacctaaTATTATTTCGTAAATGCTGACAACCCACTAGGT-------------------------------------------------TAGATGT--------TGAGAT---------TACAGAT------------------------------------------ATGTATATAT--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       134179 179 -   1709092 AAGTCTTCTATGCAACAATGTCAGGAATAAAAATTTAtcaggttggtccatatgaaattgtcag-------tattttacct--------------ttttcaaccaataaaatgtcaatttcacatagttcaacctaaTATTATTTCGTAAATGCTGACAACCCACTAGGT-------------------------------------------------TAGATGT--------TGAGAT---------TACAGAT------------------------------------------ATATATATAA--
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17296132 179 - 121039945 AAGTCTTCAATGCAACAATGTCAGGAATAAAAATTTAtcaggttggtccacatgaaattgtcag-------tattttacct--------------ttttcaaccaataaaatggcaatttcacatagttcaacctaaTATTATTTCATAAATGCTGACAACCCACTAGGT-------------------------------------------------TAGATGT--------TGAGAT---------TACAGAT------------------------------------------AAATATATAA--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60970419 178 + 169600520 AAGTCTTCTGTGCAACAATGTCAGGAATAAAAATTTAtcagattggt-catatgaaactgacag-------tattttacct--------------ttttcaaccaataaaatggcaatttcatatagttcaaccaaaTATTATTTCATAAATACTGACAACCCACTAGGT-------------------------------------------------TAGATGT--------TGAGGT---------TATAGAT------------------------------------------ATATATATAT--
i rheMac8.chr7              C 0 I 3
s macFas5.chr7              108497142 178 - 171882078 AAGTCTTCTGTGCAACAATGTCAGGAATAAAAATTTAtcagattggt-catatgaaactgacag-------tattttacct--------------ttttcaaccaataaaatggcaatttcatatagttcaaccaaaTATTATTTCATAAATACTGACAACCCACTAGGT-------------------------------------------------TAGATGT--------TGAGGT---------tatagat------------------------------------------atatatatat--
i macFas5.chr7              C 0 I 4
s macNem1.NW_012011945v1       113644 178 -   2311642 AAGTCTTCTGTGCAACAATGTCAGGAATAAAAATTTAtcagattggt-cacatgaaactgacag-------tattttacct--------------ttttcaaccaataaaatggcaatttcatatagttcaaccaaaTATTATTTCATAAATACTGACAACCCACTAGGT-------------------------------------------------TAGATGT--------TGAGGT---------TATAGAT------------------------------------------ATATATATAT--
i macNem1.NW_012011945v1    C 0 I 5
s cerAty1.NW_012002657v1       105725 178 -   1987038 AAGTCTTCTGTGCAACAATGTCAGGAATAAAAATTTATCAGATTGGT-catatgaaactgacag-------tattttacct--------------ttttcaaccaataaaatggcaatttcatatagttcaacctaaTATTATTTCATAAATACTGACAACCCACTAGGT-------------------------------------------------TAGATGT--------TGAGGT---------TACAGAT------------------------------------------ATATATATAT--
i cerAty1.NW_012002657v1    C 0 I 3
s chlSab2.chr29              21187238 175 -  24206276 AAGTCTTCTGTGCAATAATGTCAGGAATAAAAATTTAtcagattagt-catatgaaactgacag-------tattttacct--------------ttttcaaccaataaaatggcaatttcacatagttcaacctaa---TATTTCATAAATACTGACAACCTACTAGGT-------------------------------------------------TAGATGT--------TGAGGT---------TACAGat------------------------------------------atatatatat--
i chlSab2.chr29             C 0 I 10
s manLeu1.NW_012106908v1       128706 178 -   1397330 AAGTCTTCTGTGCAACAATGTCAAGAATAAAAATTTAtcagattggt-catatgaaactgacag-------tattttacct--------------ttttcaaccaataaaatggcaatttcatatagttcaacctaaTATTATTTCATAAATACTGACAACCCACTAGGT-------------------------------------------------TAGATGT--------TGAGGT---------TACAGAT------------------------------------------ATATATATAT--
i manLeu1.NW_012106908v1    C 0 I 3
s colAng1.NW_012117110v1       127553 175 -   1784207 AAGTCTTTTATGCAAC---GTCAGGAATAAAAATTTAtcagattggt-catatgaaactgtcag-------tattttacct--------------ttttcaaccaataaaatggcaatttcacatagttcaacctaaTATTATTTCATAAATACTGACAACCCACTAGGT-------------------------------------------------TAGATGT--------TGAGGT---------TACAGat------------------------------------------atatatatat--
i colAng1.NW_012117110v1    C 0 I 7
s calJac3.chr6               22333128 175 + 158406734 AAGCCTTCTATGCAACAATGTCAGGAATAAAAATTTAtcagattggtccatatgaaattgtcaa-------tattttacct--------------ttttcaaccaataaaatggtaatttcacataattcaacctaaTATTATTTCATAAATGCTGACAACCCACTAGGT-------------------------------------------------TAGATGT--------TGAGAT---------TACAG----------------------------------------------ATATATAT--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50568518 172 +  54856640 AAGTCTTCTATGCAACAATGTCAGGAATAAAAATTTATCAGATCTGTccctatgaaattgtcag-------tattttacct--------------ttttcaaccaataaaatggtaatttcacataattcaacctaG---TATTTCTTAAATGCTGACAACCCACTAGGT-------------------------------------------------TAGATGT--------TGAGAT---------TACAG----------------------------------------------ATACATAT--
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       721177 179 -   2910086 AAGTCTTCTATGCAACAATGTCTGGAATAAAAATTTAtcagattggtccacatgaaattgtcaa-------tattttacct--------------ttttcaaccaataaaatggtaatttcacataattcaacctaaTATTATTTCATAAATGCTGACGACCCACTAGGT-------------------------------------------------TAGATGT--------TGAGAT---------TACAGAT------------------------------------------ATATATATAT--
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40732639 175 +  42888418 AAGTCTTCTATGCAACAATGTCAGGAATAAAAATTTAtcagattggtccatatgaaattgtcaa-------tattttacct--------------ttttcaaccaataaaatggtaatttaacataattcaacctaaTATTATTTCATAAATGCTGACAACCCACTAGGT-------------------------------------------------TAGATGT--------TGAGAT---------TACAG----------------------------------------------ACATATAT--
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81441841 182 + 145441459 AAGTAGTCTCTGaaaaaatataatgaataaaattttatt---ttGGTACATATAAAATTAGTAATACTAACTATTTTAGCTAATAACAACAAGTCATTTTAACCAA-AAAATAGAAATTTCACACAGCTCAA--------TATTTCATGAGTACTGAAAAACTGCT-GGT-------------------------------------------------CAGAAAT--------TGAGAT---------CACAGA---------------------------------------------ATAGAT----
i mm10.chr7                 I 1278 C 0
s canFam3.chr3               54486287 166 +  91889043 AAGTTTTCTGTGCAACCCTAT-ACGAACTAAAACTTATTAGATTGATCCATACAGAACTGTCAA-------CATTCTACCT--------------TTTGCAACCAACAAAATAAGAGATTCACACAGTTCAATC------TATTTCATAAATTCAAAAAACCTGTTAGGT-------------------------------------------------TGGATGT--------TGAGAT---------TACAGAT------------------------------------------AGAG--------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1939546 274 +   3943991 AAGTCTTCTGTTCAACAATGTAAGGAATAAAAATGTATTAgatc----tacatcaaactgtcaa-------tattttacca--------------ttttt---taacaaaatggcagtttc--atagttcaacctaaCATT------TAAATAGTGAAAACCTGTTAGGTAAACAAAACAATCTTTGCCCTCAGAGGAAGGAAAAAAAAAATCCACAGGTAAATGTATACAGAGTTAGGTACAAAACGCTACAGGTGGTAATGAATAGTGGGACAACATTGTGAATACAACAGCAGTGAAATATATATCT
i dasNov3.JH570731          C 0 C 0
e otoGar3.GL873530             722339 667 -  36342412 I

a score=35722.000000
s hg38.chr15_KI270850v1_alt    424767 3 +    430880 AAA
s panTro5.chr15              63577263 3 +  83230942 aaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80534201 3 +  99763055 AAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       134358 3 -   1709092 AAA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17296311 3 - 121039945 AAC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60970600 3 + 169600520 AAA
i rheMac8.chr7              I 3 C 0
s macFas5.chr7              108497324 3 - 171882078 AAA
i macFas5.chr7              I 4 C 0
s macNem1.NW_012011945v1       113827 3 -   2311642 AAA
i macNem1.NW_012011945v1    I 5 C 0
s cerAty1.NW_012002657v1       105906 3 -   1987038 AAA
i cerAty1.NW_012002657v1    I 3 C 0
s chlSab2.chr29              21187423 3 -  24206276 aAA
i chlSab2.chr29             I 10 C 0
s manLeu1.NW_012106908v1       128887 3 -   1397330 AAA
i manLeu1.NW_012106908v1    I 3 C 0
s colAng1.NW_012117110v1       127735 3 -   1784207 taa
i colAng1.NW_012117110v1    I 7 C 0
s calJac3.chr6               22333303 3 + 158406734 AAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50568690 3 +  54856640 AAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       721356 3 -   2910086 ATA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40732814 3 +  42888418 AAA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             723006 3 -  36342412 AAA
i otoGar3.GL873530          I 667 C 0
s mm10.chr7                  81442023 3 + 145441459 AAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54486453 3 +  91889043 GAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1939820 3 +   3943991 GAA
i dasNov3.JH570731          C 0 I 235

a score=584349.000000
s hg38.chr15_KI270850v1_alt    424770 69 +    430880 ACATACTCCTTGCCCTCAGGAGAATTATTCAGGTAGGAAAAAGAAACAAATCTAGTTAGCTAAGTGGAG
s panTro5.chr15              63577266 69 +  83230942 acatactccttgccctcaggagaattattcaggtaggaaaaagaaacaAATCTAGTTAGCTAAGTGGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80534204 69 +  99763055 ACATACTCCTTGCCCTCAGGAGAATTATTCAGGTAGGAAAAAGAAACAAATCTAGTTAGCTAAGTGGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       134361 69 -   1709092 ACATACTCCTTGCCCTCAGGAGAATTATTCAGGTAGGAAAAAGAAACAAATCTAGTTAGCTAAGTGGAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17296314 65 - 121039945 ACATACTCCTTGCCCTCAGGAGAATT----AGGTAGGAAAAAGAAACAAATCTAGTTAGCTAAGTGGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60970603 69 + 169600520 AAAAACTCCTTGCCCTCAGGATAATTATTTAGGTAGGAAAAAGAACCAAATCTAGTTAGGTAAGTAGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108497327 69 - 171882078 AAAAACTCCTTGCCCTCAGGATAATTATTTAGGTAGGAAAAAGAACCAAATCTAGTTAGGTAAGTAGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       113830 69 -   2311642 AAAAACTCCTTGCCCTCAGAATAATTATTTAGGTAGGAAAAAGAACCAAATCTAGTTAGGTAAGTAGAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       105909 69 -   1987038 AAAAACTCCTTGCCCTCAGGATAATTATTTAGGTAGGAAAAAGAACCAAATCTAGTTAGGTAAGTAGAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21187426 69 -  24206276 AAATACTCCTTGCCCTCAGTATAATTATTTAGGTAGGAAAAAGACCCAAATCTAGTTAGGTAAGTAGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       128890 69 -   1397330 AAAAACTCCTTGCCCTCAGGATAATTATTTAGGTAGGAAAAAGAACCAAATCTAGTTAGGTAAGTAGAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       127738 69 -   1784207 acataCTCCTTGCCCTCAGGATAATTATTTAGGTAGGAAAAAGAACCAAATCTAGTTAGGTAAGTAGAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22333306 59 + 158406734 ACAA--TCCTTGCCCTCAAGAGAATT----AGGTAAGAAAAAGAAACAAATCTAGT----CAAGTGGAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50568693 59 +  54856640 ACAA--TCCTTACCCTCAGGAGAATT----AGGTAAGAAAAAGTAACAAATCTAGT----TAAGTAGAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       721359 59 -   2910086 ACAA--TCCTTGCCCTCAGGAGAATT----AGGTAAGAAAAAGAAACAAATCTTGT----TAAGTAGAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40732817 46 +  42888418 ACAA--TCCTTGCCTTCAGGAGAATG----AGGCAAGAAAAAGAAACATA-----------------AG
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             723009 66 -  36342412 CTATAATCCTTGCCCTGAGGAATATTGCTTAAGTGAGAGAAAGA---AAACCTAGTTAGGTGAGTGGAA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81442026 62 + 145441459 ACAG--CTCATGTC-TCAGAAGAATTCATTTAATGG----AATGAGTAGATTCAGTCAGGCCAGTGGAA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54486456 56 +  91889043 GCATAATCCTTGCCCTAAGGAGAATTAGTCAAGCAAGAGAAGG----AAATCTAGCTAGG---------
i canFam3.chr3              C 0 C 0
e dasNov3.JH570731            1939823 235 +   3943991 I

a score=2620608.000000
s hg38.chr15_KI270850v1_alt    424839 220 +    430880 ATC-----AAGCATAAAATGC----TAT---AGAAGAGAGGAATAAAGT-AGGGTATCTAAAATGGTTTCACAACTCAGATGTTT-TGGCTAGAGAATAATGAAAATGCAGAATTTCAATAAGCAGGCATGAG-AAAAAGCATTAACACA---CAGAGAACAAGCACAGAGAGGATACAGAACACAGTAAATTCAAGAAAACAAAGTAGTCCAACAGGGCTGGACAGGAAGG-----CTCACC
s panTro5.chr15              63577335 220 +  83230942 ATC-----AAGCATAAAATGC----TAT---AGAAGAGAGGAATAAAGT-AGGGTATCTAAAATGGTTTCACAACTCAGATGTTT-TGCCTAGAGAATAATGAAAATGCAGAATTTCAATAAGCAGGCATGAG-AAAAAGCATTAACACA---CAGAGAACAAGCACAGAGAGGATACAGAACACAGTAAATTCAAGAAAACAAAGTAGTCCAACAGGACTGGACAGGAAGG-----CTCACC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80534273 220 +  99763055 ATC-----AAGCATAAAATGC----TAT---AGAAGAGAGGAATAAAGT-AGGGTATCTAAAATGGTTTCACAACTCAGATGTTT-TGGATAGAGAATAATGAAAATGCAGAATTTCAATAAGCAGGCATGAG-AAAAAGCATTAACACA---CAGAGAACAAGCACAGAGAGGATACAGAACACAGTAAATTCAAGAAAACAAAGTAGTCCAACAGGACTGGACAGGAAGG-----CTCACC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       134430 220 -   1709092 ATC-----AAGCACAAAATGC----TAT---AGAAGAAAGGAATAAAGC-AGGGTTTCTAAAATGGTTTCACAACTCAGATGTTT-TGGCTAGAGAATAATGAAAACGCAGAATTTCAATAAGCAGGCATGAG-AAAAAGCATTAACACA---CAGAGAACAAGCACACAGAGGATATAGAACACAGTAAATTCATGAAAACAAAGTAGTCCAACAGGGCTGGACAGGAAGG-----CTCACC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17296379 218 - 121039945 ATC-----CAGCACAAAATGC----TAC---AGAAGAGAGGAATAAATC-AGGGTGTCTAAAATGGTTTCACAACTCAGATGTTT-TGGCTAGAGAATAATGAAAATGCAGAATTTCAATAAGGAGGCATGAG-AAAAAGCATTA--ACA---CAGAGAACAAGCACAGAGAGGATACAGAACACAGTAAATTCAAGAAAACAAAGTAGTCCAACAGGGCTGGACAGGAAGG-----CTCACC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60970672 220 + 169600520 ATC-----AAGCACAAAATGC----TAC---AGAAGAGAGGAATAAATC-AGGGTGTCTAAAATGGTTTCACAATTCAGGCGTTT-TGGCCAGAGAATAATGAAAATGCAGAATTTCAATAAGCAGGCATAAG-AAAGAGCATTAACACA---CAGAGAACAAGCACAGAGAGGATACAGAACACAGTAAATTCAAGAAAACAAAGTGGTCCAACAGGGCTGGACAGGAAGG-----CTCACC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108497396 220 - 171882078 ATC-----AAGCACAAAATGC----TAC---AGAAGAGAGGAATAAATC-AGGGTGTCTAAAATGGTTTCACAATTCAGGCGTTT-TGGCCAGAGAATAATGAAAATGCAGAATTTCAATAAGCAGGCATAAG-AAAGAGCATTAACACA---CAGAGAACAAGCACAGAGAGGATACAGAACACAGTAAATTCAAGAAAACAAAGTGGTCCAACAGGGCTGGACAGGAAGG-----CTCACC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       113899 220 -   2311642 ATC-----AAGCACAAAATGC----TAC---AGAAGAGAGGAATAAATC-AGGGTGTCTAAAATGGTTTCACAATTCAGGCGTTT-TGGCCAGAGAATAATGAAAATGCAGAATTTCAATAAGCAGGCATAAG-AAAGAGCATTAACACA---CAGAGAACAAGCACAGAGAGGATACAGAACACAGTAAATTCAAGAAAACAAAGTGGTCCAACAGGGCTGGACAGGAAGG-----CTCACC
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       105978 220 -   1987038 ATC-----AAGCACAAAATGC----TAC---AGAAGAGAGGAATAAATC-AGGGTGTCTAAAATGGTTTCACAATTCAGGCGTTT-TGGCCAGAGAATAATGAAAATGCAGAATTTCAATAAGCAGGCATAAG-AAAGAGCATTAACACA---CAGAGAACAAGCACAGAGAGGATATAGAACACAGTAAATTCAAGAAAACAAAGTGGTCCAACAGGGCTGGACAGGAAGG-----CTCACC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21187495 219 -  24206276 ATC-----AAGCACAAAATGC----T-C---AGAAGACAGGAATAAATC-AGGGTGTCTAAAATGGTTTCACAATTCAGGCGTTT-TGGCCAGAGAATAATGAAAATGCAGAATTTCAATAAGCAGGCATGAG-AAAGAGCATTAACACA---CAGAGAACAAGCACAGAGAGGATACAGAACACAGTAAATTCAAGAAAACAAAGTGGTCCAACAGGGCTGGACAGGAAGG-----CTCACC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       128959 220 -   1397330 ATC-----AAGCACAAAATGC----TAC---AGAAGAGAGGAATAAATC-AGGGTGTCTAAAATGGTTTCACAATTCAGGCGTTT-TGGCCAGAGAATAATGAAAATGCAGAATTTCAATAAGCAGGCATAAG-AAAGAGCATTAACACA---CAGAGAACAAGCACAGAGAGGATATAGAACACAGTAAATTCAAGAAAACAAAGTAGTCCAACAGGGCTGGACAGGAAGG-----CTCACC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       127807 220 -   1784207 ATC-----AAGCACAAAATGC----TAC---AGAAGAGAGGAATAAATC-AGGGTGTCTAAAATGGTTTCACAATTCAGGCGTTT-TGGCCAGAGAATAATGAAAATGCAGAATTTCAGTAAGCAGGCATGAG-AAAGAGCATTAACACA---CAGATAACAAGCAGAGAGAGGATACAGAACACAGTAAATTCAAGAAAACAAAGTGGTCCAACAGGGCTGGACAGGAAGG-----CTTACC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22333365 219 + 158406734 A-C-----AAGCACAAAATAC----TAC---AGAAGACAAGAATAAATA-GAGGTATCTAAAATGGTTTCACAATTCAGACATTT-TGGCTAGAGAATAATGAAAACGTAAAATTTCAATAAGCAGGCATGAG-AAAGAGCATAAACACC---CAGAGAATAAGCACAGAGAGGATACAGAACACAGTAAATCCAAGAAAAGGAAGTAGTCCAACAGGGCTGGAAAGGAAAG-----TTCACC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50568752 219 +  54856640 A-C-----AAGCACAAAATAC----CAC---AGAAGAGAAGAATAAATC-GAGGTATCTACAATGGTTTCACAATTCAGACATCT-TGGCTAGAGAATAATGAAAACGCAGAATTTCAATAAGCAGGCATGAG-AAAGAGCGTAAACACC---CAGAGAAAAAGCACAGAGAGGATACAGAACACAGTAAATTCAAGAAAAGGAAGTAGTCCAACAGGGCTGGATAGGAAAG-----TTCACC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       721418 219 -   2910086 A-C-----AAGCACAAAATAC----TAC---AGAAGAGAAGAATAAATC-GAGGTGTCTAAAATGGTTTCACAATTCAGACATTT-TGGCTAGAGAATAATGAAAATGCAGAATTTCAGTAAGCAGGCATGAG-AAAGAGCATAAACACC---CAGAGAATAAGCACAGAGAGGATACAGAACACAGTAAATTCAAGAAAAGGAAGTAGTCCAACAGGGCTGTACAGGAAAA-----TTCATC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40732863 217 +  42888418 A-C-----AAGCACAAAATAC----TAC---AGAAGAGAAGAATAAATC-GAGGTGTCTAAAATGGTTTCACAATTCAGACATTT-TGGCTAGAGAATAACGAAAATGCAGAATTTCAATAAGCAGGCATGAG-AAAGAACATAAACACC---CAGAGAATAAG--CAGAGAGGATACAGAACACAGTAAATTCAAGAAAAGGAAGTAGTCCAACAGGGCTGGACAGGAAAG-----TTCACC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             723075 231 -  36342412 ATCAAGGGAAGCACAAAATGC----TACAGGAGAAGAGAGGAGTAAACC-ACAGCATCTAGAATGACTTTACAATTCAGACTTCTAAAGTCAGAAAACAATGAAAAAGCAGAATTTCAATAA-CAGGCATATG-GAAGAACAC-AATAGG---CAGAGAG-GAGCAGAGACAAGCTGTAGAACACAATAAATTCCAGGAAGGGAAGTGGTCCAACAGGGCTGGACAGGGAGGTTTCTTTCACC
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81442088 198 + 145441459 AAC-----------AAAATAC----TCG---AGAAAGTAATAATCAGTC-------TCAGAAATGGTTTCACAATTAAAGCTTCT-AAGTTAGGGAAAACTGAATATGAAGAATTTCAATATGCAGACATTTT-AAAAA-CAT-AATAGG---CAG--AACAAAGTGGCAGAGGATATAAAACACAGTATATTCAAGGAGA-GAAGTGTTTCAACAAG-----AAATAAAGG-----CTACCC
i mm10.chr7                 C 0 I 339
s canFam3.chr3               54486512 203 +  91889043 --C-----AAGTACAAAATGCCACATAT---ACAGGAGAGTAGTAAATAAAAGGTACCTGGAATGGTTTCACAACTCAGACTTCT-AAACT---GAAGAATGAAATATCAGAATTTCTC----CAAGGGTGGG-AAAGAACA--GACAAG---CAGAGAATATGCACAGAATGGATACAGAACACTATAAACTCAAGAAAAGGAAGTGG-----------AAGACAGAGAGG-----TTCACC
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1940058 191 +   3943991 ata-----aagaaaAAAACGC----------TGAAGGGAAAAGTAAATC-AA-GTGTCTGGAATGACTTCAGAATTCAGAATTTT-GATTGGGAAACTAAAGAAAA---AGACTTTCAACAAGTAGGTGTAGGAAAAGAGCAT-AACAGAATTCAGAAAACAGGCAAAGAGAAGATAAAGAACA--GTAAATTCAGGGAGAGGGA-------------ACTGGACATC---------------
i dasNov3.JH570731          I 235 C 0

a score=174386.000000
s hg38.chr15_KI270850v1_alt    425059 15 +    430880 AGGAATAAACGAGAT
s panTro5.chr15              63577555 15 +  83230942 AGGAATAAACGAGAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80534493 15 +  99763055 AGGAATAAACGAGAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       134650 15 -   1709092 AGGAATAAACGAGAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17296597 15 - 121039945 AGGAATAAACGAGAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60970892 15 + 169600520 AGGAATAAACGAGAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108497616 15 - 171882078 AGGAATAAACGAGAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       114119 15 -   2311642 AGGAATAAACGAGAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       106198 15 -   1987038 AGGAATAAACGAGAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21187714 15 -  24206276 AGGAATAAACGAGAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       129179 15 -   1397330 AGGAATAAACGAGAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       128027 15 -   1784207 AGGGATAAACGAGAT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22333584 15 + 158406734 AGGATTCAATGAGAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50568971 15 +  54856640 AGGATTCAATGAGAT
i saiBol1.JH378108          C 0 I 1
s cebCap1.NW_016107610v1       721637 15 -   2910086 AGGATTCAATGAGAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40733080 15 +  42888418 AGGATCCAATGAGAT
i aotNan1.NW_018505940v1    C 0 I 314
s otoGar3.GL873530             723306 15 -  36342412 AGGACCAAACCAGGC
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54486715 15 +  91889043 AGGAATAAAGGATAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1940249 15 +   3943991 AGAAATAAAGGAGAT
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81442286 339 + 145441459 I

a score=16981.000000
s hg38.chr15_KI270850v1_alt    425074 2 +    430880 AA-
s panTro5.chr15              63577570 2 +  83230942 AA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80534508 2 +  99763055 AA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       134665 2 -   1709092 AA-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17296612 2 - 121039945 AA-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60970907 2 + 169600520 AA-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108497631 2 - 171882078 AA-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       114134 2 -   2311642 AA-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       106213 2 -   1987038 AA-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21187729 2 -  24206276 AA-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       129194 2 -   1397330 AA-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       128042 2 -   1784207 AA-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22333599 2 + 158406734 AA-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50568987 2 +  54856640 AA-
i saiBol1.JH378108          I 1 C 0
s cebCap1.NW_016107610v1       721652 2 -   2910086 AA-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40733409 2 +  42888418 aa-
i aotNan1.NW_018505940v1    I 314 C 0
s otoGar3.GL873530             723321 2 -  36342412 AA-
i otoGar3.GL873530          C 0 I 3
s canFam3.chr3               54486730 1 +  91889043 -A-
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1940264 2 +   3943991 -GC
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81442286 339 + 145441459 I

a score=938492.000000
s hg38.chr15_KI270850v1_alt    425076 89 +    430880 AGCTACAGGTCCTAACCTCCTTCCTGTGTCGGAAAGA-----TAAATCCATCAACAGATACAAGA---------------tctcc-----tctccctgcatcacctgactttcc
s panTro5.chr15              63577572 89 +  83230942 AGCTACAGGTCCTAACCTCCTTCCTGTGTCGGAAAGA-----TAAATCCATCAACAGATACAAGA---------------tctcc-----tctccctgcatcacctgactttcc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80534510 89 +  99763055 AGCTACAGGTCCTAACCTCCTTCCTGTGTCGGAAAGA-----TAAATCCATCAACAGATACAAGA---------------tctcc-----tctccctgcatcacctgactttcc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       134667 89 -   1709092 AGCTACAGGTCCTACCCTCCTTCCTGTATCGGAAAGA-----TAAATCCATCAACAGATACAAGA---------------TCTCC-----TCTCCCTGCATCACCTGACTTTCC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17296614 89 - 121039945 AGCTACAGGTCCTAACCTCCTTCCTCTATCAGAAAGA-----TAAATCCATCAACAAATACAAGA---------------TCTCC-----TCTCCCTGCATCATCTGACTTTCC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60970909 89 + 169600520 AGCTACAGGTTCTAACCTCCTTCCTCTATCAGAAAGA-----TGAATCCATCAATAGATACAAGA---------------TCTCC-----TCTCCCTGCATCACCTGACTTTCC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108497633 89 - 171882078 AGCTACAGGTCCTAACCTCCTTCCTCTATCAGAAAGA-----TGAATCCATCAATAGATACAAGA---------------TCTCC-----TCTCCCTGCATCACCTGACTTTCC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       114136 89 -   2311642 AGCTACaggtcctaacctccttcctctatcagaaaga-----tgaatccatcaatagatacaaga---------------tctcc-----tctccctgcatcacctgactttcc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       106215 89 -   1987038 AGCTACAGGTCCTAACCTCCTTCCTCTATCAGAAAGA-----TGAATCCATCAATAGATACAAGA---------------TTTCC-----TCTCCCTGCATCACCTGACTTTCC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21187731 89 -  24206276 AGCTACAGGTCCTAACCTCCTTCCTCTATCAGAAAGA-----TGAATCCATCAATAGATACAAGA---------------TCTCC-----TCTCCCTGCATCACCTGACTTTCC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       129196 89 -   1397330 AGCTACaggtcctaacctccttcctctatcagaaaga-----tgaatccatcaatagatacaaga---------------tttcc-----tctccctgcatcacctgactttcc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       128044 89 -   1784207 AGCTACAGGTCCTAACCTTCTTCCTCTATCAGAAAGA-----TGAATCCATCAACAGATACAAGA---------------TCTCC-----TCTCCCTGCATCACCTGACTTTCC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22333601 94 + 158406734 AGGTACAGGTCCTAATCTCCTTCCTCTATCAGAACCA-----TAAATCCATCAACAGATACAAGA---------------TCTCCTCTATTCTTCCTGTATCACCTGACTTTCC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50568989 94 +  54856640 AGGTACAGGTCCTAACCTCCTTCCTCTATCAGAAAGA-----TAAATCCATCAAAAGATACAAGA---------------TCTCCGCTACTCTTCCTGCATCACCTGACTTTCC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       721654 93 -   2910086 AGGTACAGGTCC-AACCTCCTTCCTCTATCAGAAAAA-----TAAATCCATCAACAGATACAAGA---------------TCTCCTCTACTCTTCCTGCATCACCTGACTTTCC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40733411 94 +  42888418 aGGTACAGGTCCTAACCTCCTTCCTCTATCAGAAAGA-----TAAATCCATCAACAGATACGAGA---------------TCTCCTCTACTCTTCCTGCATCACCTGACTTTCC
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54486732 95 +  91889043 GGCTGCAGGTCCTTACTTA----------CAGAAAGACAAAGTGAATCCATCACCAGGTACAAAACTCAAGATACCACCCCCTTC-----TTCCTCTTCATGATCTGACC----
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1940266 62 +   3943991 ------------------------ACTATCAGAGAAAGAAAGTGAATCCATCACCAGATAC-----------------------C-----TCTTCCTTCATGGTCTGACTCTCC
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81442286 339 + 145441459 I
e otoGar3.GL873530             723323  3 -  36342412 I

a score=725585.000000
s hg38.chr15_KI270850v1_alt    425165 66 +    430880 tctctt----------ctccactggctcccctTCAGTTTGTCAGTATGT-----TCAAGACTCTTTCACCTT-AAAAA----ACCA
s panTro5.chr15              63577661 66 +  83230942 tctctt----------ctccactggctcccctTCAGTTTGTCAGTATGT-----TCAAGACTCTTTCACCTT-AAAAA----ACCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80534599 66 +  99763055 tctctt----------ctccactggctcccctTCAGTTTGTCAGTATGT-----TCAAGACTCTTTCACCTT-AAAAA----ACCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       134756 66 -   1709092 TCTCTT----------CTCCACTGGCTCCCCTTCAGTTTGTCAGTATGT-----TCAAGACTCTTTCACCTT-AAAAA----ACCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17296703 64 - 121039945 TCTCTT----------CTCCACTGGCT--CCTTCAGTTTGTCAGTATGT-----TCAAGACTCTTTCACCTT-AAAAC----ACCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60970998 64 + 169600520 TCTCTT----------CTCCACTGGCT--CCTTCAGTTTGTCAGTATGT-----TCAAGACTCTTTCACCTT-AAAAA----ACCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108497722 64 - 171882078 TCTCTT----------CTCCACTGGCT--CCTTCAGTTTGTCAGTATGT-----TCAAGACTCTTTCACCTT-AAAAA----ACTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       114225 64 -   2311642 tctctt----------ctccactggct--ccttcagtttgtcagtatgt-----tcaagactctttcacctt-aaaaa----acca
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       106304 64 -   1987038 TCTCTT----------CTCCACTGGCT--CCTTCAGTTTGTCAGTATGT-----TCAAGACTCTTTCACCTT-AAAAA----ACCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21187820 64 -  24206276 TCTCTT----------CTCCACTGGCT--CCTTCAGTTTGTCAGTATGT-----TCAAGACTCTTTCACCTT-AAAAA----ACCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       129285 64 -   1397330 tctctt----------ctccactggct--ccttcagtttgtcagtatgt-----tcaagactctttcacctt-aaaaa----acca
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       128133 64 -   1784207 TCTCTT----------CTCCACTGGCT--CCTTCAGTTTGTCAGTATGT-----TCAAGACTCTTTCACCTT-AAAAA----ACCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22333695 65 + 158406734 TCTCTT----------TTCCACTGGCT--CCTTCAGTTTGTCAGTATGT-----TCAAGATTCTTTCACCTTAAAAAA----ACCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50569083 64 +  54856640 TCTCTT----------TTCCACTGGCT--CCTTCAGTTTGTCAGTATGT-----TCAAGACTCTTTCACCTT-AAAAA----ACCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       721747 61 -   2910086 TCTCTT----------CTCCAGTGGCT--CCTTCAGTTT----GTATGT-----TCGAGACACTTTCACCTTAAAAAA----ACCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40733505 65 +  42888418 TCTATT----------CTCCACTGGCT--CCTTCAGTTTGTCAGTATGT-----TCAAGACTCTTTCACCTTAAAAAA----ACCA
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81442625 81 + 145441459 tttcttactggcttgcttcccctggct--tgttcagcctgctctcttatagaacccaaga--ctaccagcct-agggatggcacca
i mm10.chr7                 I 339 C 0
s canFam3.chr3               54486827 46 +  91889043 TTTCTT----------CTCCACTG----------------TAAGTATAC-----CCAAGGCTCATT----TT-AAAAA----ACAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1940328 64 +   3943991 CCTCTC----------CTCCACTGGCT--CCTTCACCTCCAAAGTATGC-----TTAAGACTCTCTCAACTT-AAACA----ACTA
i dasNov3.JH570731          C 0 I 2777
e otoGar3.GL873530             723323  3 -  36342412 I

a score=11662.000000
s hg38.chr15_KI270850v1_alt    425231 1 +    430880 C
s panTro5.chr15              63577727 1 +  83230942 C
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80534665 1 +  99763055 C
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       134822 1 -   1709092 C
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17296767 1 - 121039945 C
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60971062 1 + 169600520 C
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108497786 1 - 171882078 C
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       114289 1 -   2311642 c
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       106368 1 -   1987038 C
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21187884 1 -  24206276 C
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       129349 1 -   1397330 c
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       128197 1 -   1784207 C
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22333760 1 + 158406734 C
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50569147 1 +  54856640 C
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       721808 1 -   2910086 C
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40733570 1 +  42888418 C
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81442706 1 + 145441459 c
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54486873 1 +  91889043 A
i canFam3.chr3              C 0 C 0
e dasNov3.JH570731            1940392 2777 +   3943991 I
e otoGar3.GL873530             723323 3 -  36342412 I

a score=4613708.000000
s hg38.chr15_KI270850v1_alt    425232 413 +    430880 C-------ACACCTTCC-----------TTGATTTAAAATAT-CCTCCCAATT--------------CATTGCCA-----------ATTTCTTCTGCTATACTATCAACCTTCTTGAA----------------------AATATATGATCTTTA----TTT---AACTTCCTGTTCATCCTCTCAATCCACAATGTCCTGCCAGCACTG--ATCTCTCCCCTT---CCCCAAAA----AGACACTAAACAACTGCTCCCAAATTAATGCCTTCATAGCTGCC-AAATCCAACTGATACTTCAAGTCTATCTTACCCTGCATCTT---TGTAGGATCTGACCCTTCAGCTATTCTCCACTC----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCCATCTCTGGTTATTCTTCATTTTTCATAGGGTACATCTATTG----TCCAATGTTC---TTTTTGCTC---TCTTAACTCAGTGTGGAAGAGGAAATACTACAATTTCCAGGA
s panTro5.chr15              63577728 413 +  83230942 C-------ACACCTTCC-----------TTGATTTAAAATAT-CCTCCCAATT--------------CACTGCCA-----------ATTTCTTCTGCTATACTATCAACCTTCTTGAA----------------------AATATATGATCTTTA----TTT---AACTTCCTGTTCATCCTCTCAATCCACAATGTCCTGCCAGCACTG--ATCTCTCCCCTT---CCCCAAAA----AGACACTAAACAACTGCTCCCAAATTAATGCCTTCATAGCTGCC-AAATCCAACTGATACTTCAAGTCTATCTTACTCTGCATCTT---TGTAGGATCTGACCCTTCAGCTATTCTCCACTC----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCCATCTCTGGTTATTCTTCATTTTTCATAGGGTACATCTATTG----TCCAGTGTTC---TTTTTGCTC---TCTTAACTCAGTGTGGAAGAGGAAATACTACAATTTCCAGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80534666 413 +  99763055 C-------ACACCTTCC-----------TTGATTTAAAATAT-CCTCCCAATT--------------CACTGCCA-----------ATTTCTTCTGCTATACTATCAACCTTCTTGAA----------------------AATATATGATCTTTA----TTT---AACTTCCTGTTCATCCTCTCAATCCACAATGTCCTGCCAGCACTG--ATCTCTCCCCTT---CCCCAAAA----AGACACTAAACAACTGCTCCCAAATTAATGCCTTCATAGCTGCC-AAATCCAACTGATACTTCAAGTCTATCTTACTCTGCATCTT---TGTAGGATCTGACCCTTCAGCTATTCTCCACTC----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCCATCTCTGGTTATTCTTCATTTTTCATAGGGTACATCTATTG----TCCAGTGTTC---TTTTTGCTC---TCTTAACTCAGTGTGGAAGAGGAAATACTACAATTTCCAGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       134823 413 -   1709092 C-------ACACCTTCC-----------TTGATTTAAAATAT-CCTCCCAATT--------------CACTGCCA-----------ATTTCTTCTGCTATACTATCAACCTTCTTGAA----------------------AATATATGATCTTTA----TTT---AACTTCCTGTTCATCCTCTCAATCCACAATGTCCTGCCAGCACTG--ATCTCTCCCCTT---CCCCAAAA----AGACACTAAACAACTGCTCCCAAATTAATGCCTTCATAGCTGCC-AAATCCAACTGATACTTCAAGTCTATCTTACTCTGCATCTT---TGTAGGATCTGACCCTTCAGCTATTCTCCACTC----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCCATCTCTGGTTATTCTTCATTTTTCATAGGGTACATCTATTG----TCCAATGTTC---TTTTTGCTC---TCTTAACTCAGTGTGGAAGAGGAAATACTACAATTTCCAGGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17296768 412 - 121039945 C-------ACATCTTCC-----------TTGATTTAAAATAT-CCTCCCAATT--------------CACTGCCG----------TCTTTCTTCTGCTATACTATCAACCTTCTTGAA----------------------AATATATGATCTTTA----TTT---AACTTCCTGTTCATCCTCTCAATCCACAACGTCCTGCCAGCACTG--ATCTCTCCCCTT---CCCCAAAA----AGACACTAAACAACTGCTCCCAAATTAATGCCTTCATAGCTGAC-AAATCCAACTGATACTTCAAGTCTATCTTACTCTGCATTTT---TGTAGGCTCTGACCCTTCAGCTATTCTCCACTC----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCCATCTCTGGCTATTCTTCATTTTTCATAGGGTACATCTATTG----TCCAATATTC---TTTTTGCTC---TCTTAACTCAGTGTGGAAGAGGAAATACTACCATTT--AGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60971063 412 + 169600520 C-------ATACCTTCC-----------TTGATTTAAAATAT-CCTCCCAATT--------------CACTGCCG----------TCTTTCTTCTGCTACACTATCAAGCTTCTCGAA----------------------A--ATGTGATCTTTA----TTT---AACCTCCTGTTCGTCCTCTCAATCTACAATGTCCTGCCAGCACTA--ATCTCTCCCCTT---CCCCAAAA----AGACACTAAACAACTGCTCCCAAATTAATGACTTCACAGCTGCC-AAACCCAACTGATACTTCCAGTCTATCTTACCCTGCATTTT---TGTAGGATCTGACCCTTCAGCTATTCTCCACTC----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCCATTTCTGGTTATTCTTCAGTTTTCACAGGGTACATCTATTG----TCCAATATTC---TTTTTGCTC---TCTTAACTCAGTCTGGAAGAGGAAATACTACAATTTCCAGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108497787 412 - 171882078 C-------ATACCTTCC-----------TTGATTTAAAATAT-CCTCCCAATT--------------CACTGCCG----------TCTTTCTTCTGCTACACTATCAAGCTTCTCGAA----------------------A--ATGTGATCTTTA----TTT---AACCTCCTGTTCGTCCTCTCAATCTACAATGTCCTGCCAGCACTA--ATCTCTCCCCTT---CCCCAAAA----AGACACTAAACAACTGCTCCCAAATTAATGACTTCACAGCTGCC-AAACCCAACTGATACTTCCAGTCTATCTTACCCTGCATTTT---TGTAGGATCTGACCCTTCAGCTATTCTCCACTC----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCCATTTCTGGTTATTCTTCAGTTTTCACAGGGTACATCTATTG----TCCAATATTC---TTTTTGCTC---TCTTAACTCAGTCTGGAAGAGGAAATACTACAATTTCCAGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       114290 412 -   2311642 c-------ataccttcc-----------ttgatttaaaatat-cctcccaatt--------------cactgccg----------tctttcttctgctacactatcaagcttctcgaa----------------------a--atgtgatcttta----ttt---aacctcctgttcgtcctctcaatctacaatgtcctgccagcacta--atctctcccctt---ccccaaaa----agacactaaacaactgctcccaaattaatgacttcacagctgcc-aaacccaactgatacttccagtctatcttaccctgcatttt---tgtaggatctgacccttcagctattctccactc----aagtcaggaatcactttctcctggctctccctttccatttctggttattcttcagttttcACAGGGTACATCTATTG----TCCAATATTC---TTTTTGCTC---TCTTAACTCAGTCTGGAAGAGGAAATACTACAATTTCCAGGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       106369 412 -   1987038 C-------ATACCTTCC-----------TTGATTTAAAATAT-CCTCCCAATT--------------CACTGCCG----------TCTTTCTTCTGCTACACTATCAAGCTTCTCGAA----------------------A--ATGTGATCTTTA----TTT---AACCTCCTGTTCGTCCTCTCAATCTACAATGTCCTGCCATCACTA--ATCTCTCCCCTT---CCCCAAAA----AGACACTAAACAACTGCTCCCAAATTAATGACTTCATAGCTGCC-AAACCCAACTGATACTTCCAGTCTATCTTACCCTGCATTTT---TGTAGGATCTGACCCTTCAGCTATTCTCCACTC----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCCATTTCTGGTTATTCTTCAGTTTTCACAGGGTACATCTATTG----TCCAATATTC---TTTTTGCTC---TCTTAACTCAGTCTGGAAGAGGAAATACTACAATTTCCAGGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21187885 412 -  24206276 C-------ATACCTTCC-----------TTGATTTAAAATAT-CCTCCCCATT--------------CACTGCCG----------TCTTTCTTCTGCTACACTATCAAGCTTCTCAAA----------------------A--ATGTGATCTTTA----TTT---AACCTCCTGTTCGTCCTCTCAATCTACAATGTCCTGCCAGCACTA--ATCTCTCCCCTT---CCCCAAAA----AGACACTAAACAACTGCTCCCAAATTAATGACTTCATAGCTGCC-AAACCCAGCTGATACTTCCAGTCTATCTTACCCTGCATTTT---TGTAGGATCTGACCCTTCAGCTATTCTCCACTC----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCCATTTCTGGTTATTCTTCAGTTTTCACAAGGTACATCTATTG----TCCAATATTC---TTTTTGCTC---TCTTAACTCAGTCTGGAAGAGGAAATACTACAATTTCCAGGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       129350 412 -   1397330 c-------ataccttcc-----------ttgatttaaaatat-cctcccaatt--------------cactgccg----------tctttcttctgctacactatcaagcttctcgaa----------------------a--atgtgatcttta----ttt---aacctcctgttcgtcctctcaatctacaatgtcttgccatcacta--atctctcccctt---ccccaaaa----agacactaaacaactgctcccaaattaatgacttcatagctgcc-aaacccaactgatacttccagtctatcttaccctgcatttt---tgtaggatctgacccttcagctattctccactc----aagtcaggaatcactttctcctggctctccctttccatttctggttattcttcagttttcACAGGGTACATCTATTG----TCCAATATTC---TTTTTGCTC---TCTTAACTCAGTCTGGAAGAGGAAATACTACAATTTCCAGGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       128198 412 -   1784207 C-------ATACCTTCC-----------TTGATTTAAAATAT-CCTCCCAATT--------------CACTGCCA----------TCTTTCTTCTGCTACACTATCAAGCGTCTCGAA----------------------A--ATGTGATCTTTA----TTT---AACCTCCTGTTCGTCCTCTCAATCTACAACGTCCTGCCAGCACTA--ATCTCTCCCCTT---CCCCAAAA----AGACACTAAACAACTGCTCCCCAATTAATGACTTCAGAGCTGCC-AAACCCAACTGATACTTCCAGTATATCTTACTCTGCATTTT---TGTAGGATCTGACCCTTCAGCTATTCTCCACTC----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCCATCTCTGGTTATTCTTCAGTTTTCACAGGGTACATCTATTG----TCCAACATTC---TTTTTGCTC---TCTTAACTCAGTCTGGAAGAGGAAATACTACAATTTCCAGGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22333761 414 + 158406734 C-------ACATCTTCC-----------TCGATTTAAAATAT-CCTCCCAATT--------------CACTGCCA----------TCTTTCTTTTGCTATACTACCAACCTTCTTGAA----------------------AATATGTGATCTTTA----CTT---AACCTCCTGTTCATCCTCTCAATCCACAACATCCTGCTACCACTATAATCTCTCCCTTT---CCTCCAAA----AGACACTAAACAATGGCTCCCAAATTAATGACTT--TAGCTGCC-AAACCAAACTAATACTTCAAGTCTATCTTACTCTGCATCTT---TCTGATATGTGACGCTTCAATTATTCTCTACTC----AAGTCAGGAATCCTTTTCTCCTGGCTCTCCCTTTCCATCTCTGGTTATTTTCCAGTTTTCATAGGGTACATCTACTG----TCCGACATTC---TTTTTGCTC---TATTAACTCAGTCTGGAAGAGGATATACAACAACTTCCAGGA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50569148 414 +  54856640 C-------ACACCTTCC-----------TTGATTTAAAATAT-CCTCCCAATT--------------CACTGCCA----------TCTTTCTTTTGCTATTCTACCAACCTTCTTGAA----------------------AATATGCGATCTTTA----TTT---AACCTCCTGTTCATCCTGTCAATCCAAAACATCCTGCTAGCACTATAATATCTCCCCTT---CCCCCAAA----AGACACTGAACAATTGCTCCCAAATTAATGACTT--TAGCTGCC-AAACCCAACTAATACTTCAAGTCTATCTTACTCTGCATCTT---TCTGAGATCTGACCCTTCAACTATTCTCTACTC----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCCATCTCTGGTTATTCTTCAGTTTTCATAGGGTACATCTACTG----TCCGATAGTC---TTTTTGCTC---TATTAACTCAGTCTGGAAGAGGATATACTACAACTTCCAGGA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       721809 405 -   2910086 C-------ACACCTTCC-----------TTGATTTAAAATAC-CCTCCCAATT--------------CACTGCCA----------TCTTTCTTTTGCTATTCTACCAACCTTCTTGAA----------------------AATACGTGATCT--------TT---AACCTCCTGTTCATCCTCTCAGTCCACAACATCCTGCTAGCACTATGATCTCTCTCCTT---CCCCCAAA----AGACACTGAAGAATTGCTCCCAAATTAATGACTT--TAGCTGCC-AAACCCAATTAATACTTCAAGTCTATCTTACTCTGCATCCT---TCTGAGATCTGACCCTTCAACTATT-----CTC----AAGTGAGGAATCACTTTCTCCTGGCTCTCCCTTTCCATCTCTGGTTATTCTTCAGTTTTCACAGGGTACATCTACTG----TCAGACATTA---TTTTTGCTC---TATTAACTCAGTCTGGAAGAGGATATACTACAACTTCCAGGA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40733571 411 +  42888418 C-------ACACCTTCC-----------TTAATCTAAAATAT-CCTACCAATT--------------CACTGTCA----------TCTTTCTTTTGCTATACTACCAACCTTCTTGAA----------------------AATATGTGATCTTTA----TTT---AACCTCCTGTTCATCCTCTCAATCCACAACATCCTGCTAGCACTATAATCTCTCCCCTT---CCCCCAAA----AGACACTAAACAATTGCTCCCAAATTAATGACTT--TAGCTGCC-AAACCCAACTAATACTTCAAGTCTATCTTACTCTGCATCTT---TCTGAGATCTGACCCTTCAACTATTCTCTACTC----AAGTCAGGAATCACTTTCTCCTGGCTCTCCCTTTCTATCTCTGGTTATTCTTCAGTTTTCATAGGGTACATCTACTG----TCCGACATTC---TTTTTGCTC---TATTAACTCAGTCTGGAAGAGGATAT---ACAATTTCCAGGA
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81442707 451 + 145441459 ccacgaggggacctcccccccttgatcactaattgagaaaatgccttacagctggatctcatggaggcatttccacaactgaagctcctttctctgtgataactccagctgtgtcaaattgacacaaaaccagccagtacaATGACCAACCAGTA----TTT----ATCTCTGGTTCATTCCTTCAATCTATAACAT--GGTCAACA-TG-----------CTG---TCCCAAAATACTTGACACTATATA---GCTCCTAAATCAATGATTTCATAGTTGCC-AAAGCCAACCAA------------ATCTTTCTTGGCTTTGTGGGTGGGGGTGGGGGAACCTCAATCA--CTCTACTG----AATTCAGGAACCACTTTCTCCTGGTTCGTCCT-----CCTTTGGTTATTTTTATGTATCTATAGGGTATATATATCT----ACCAATCACCCAGTCTTAATTC---TATTG--TCAGTCT-GAGAAAGAGACAGAACAGTATCCAGAA
i mm10.chr7                 C 0 I 243
s canFam3.chr3               54486874 410 +  91889043 C-------ACACTTTCC-----------TTGACTTAAAACAT-----CCAAGC--------------CACTGCCT----------TCTTTCTCTTGCTCTACTCCTAATCTTCTAGAA----------------------AATATGCTATACTTA----GTTCCTAACCTTCTGCTTGTCCTCTCAATCCACAATATCCTGGTAGTATGA--CACCCTCCCCACAAACAACAGAA----CAACACTACAGAATTGCTCCTAAATTGATGACTTCATAACTGCC-AAACCAAACCAGTATTGCAGGTTTATTTTACGTGGAATCTT---TG-GAGATCCGATCCTT-AACTATTCTCCACTCACTTAATTCAGGATTC--CTTCTCATCGATCTACTTTTC----------TAGTTTTCAGTTTCTACAGGGTACATCAAATGTGACTCCTCGCTCT---CTCTTGCTCTCGTCTCAATGCAGTCTGGAAAAGGAGAT---ATAATTTCCAAGA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1943169 407 +   3943991 C-------ACATACTTC-----------TTGATTTAAAA-AT-TCTCCCAAAT--------------CACTGACT----------TCTTTCTTTTGCTCTACAACCAACATCTTGGAA----------------------AACAGGCTATCTTTACTTCTTT---AACCCCTTGTTTGCCCTCT-AACCTGCAATATTCCATCAGCGGTG-----TCTTCTTAC---CAAAAAAA----AGACACTATACAACTGCTCCTAAATTAATGACTTCACGACTGCTAAAACCTAACCATTATGTTAAGTCTATCTTTCTTGGCATCTT---TG-GGTATGTGAT-TGTCAACTACTCTCCACTC----AATTCATGGACCACTTGCTC------CCTCCTTTATTTCTCTGGTTACTGTTTGGTTTCTATAAGGTACAATTATTG----TCCAATATTCT--TTTTTGCTC---TGTAGACTCAGTATGGAAAAAGAAATACTACAATTTCTAGTA
i dasNov3.JH570731          I 2777 C 0
e otoGar3.GL873530             723323   3 -  36342412 I

a score=246332.000000
s hg38.chr15_KI270850v1_alt    425645 22 +    430880 CAGGTTTATGAGA-ACATT-AGAG
s panTro5.chr15              63578141 22 +  83230942 CAGGTTTATGAGA-ACATT-AGAG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80535079 22 +  99763055 CAGGTTTATGAGA-ACATT-AGAG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       135236 22 -   1709092 CAGGTTTATGAGA-ACATT-AGAG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17297180 22 - 121039945 CAGGTTTATGAGG-ACATT-AGAG
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60971475 22 + 169600520 CACATTTATGAGA-ACACT-AGAG
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108498199 22 - 171882078 CACATTTATGAGA-ACACT-AGAG
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       114702 22 -   2311642 CACATTTATGAGA-ACACT-AGAG
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       106781 22 -   1987038 CACGTTTATGAGA-ACACT-AGAG
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21188297 22 -  24206276 CACGTTTATGAGA-ACACT-AGAG
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       129762 22 -   1397330 CACGTTTATGAGA-ACACT-AGAG
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       128610 22 -   1784207 CAGGTTTATGAGA-ACACT-AGAG
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22334175 22 + 158406734 CAGATTTATGAGA-ACATT-AGAG
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50569562 22 +  54856640 CAGATTTATGAGA-ACATT-AGAG
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       722214 22 -   2910086 CAGATTTATGAGA-ACATT-AGAG
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40733982 22 +  42888418 CAGATTTATGAGA-ACATT-AGAT
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               54487284 22 +  91889043 CAGGTTTATGAGA-ATGTT-AAGG
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1943576 24 +   3943991 TAGGCTTATGGGAGACATTGAGAG
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81443158 243 + 145441459 I
e otoGar3.GL873530             723323  3 -  36342412 I

a score=4068815.000000
s hg38.chr15_KI270850v1_alt    425667 368 +    430880 AATATTTCATACCAAAACACCTCAAGAATA-TTGAAAGCACATGG-TCACTATAATTTTAACTCTCATC----ACTTACCTGTCAC-ACTGCTAACTGTATGGACTGTAAGCTCACCAATCTGATAAACTATAAAGGTCCCTCACAACCTGTATCT---------CAGCACTGCCCCAGAATAGTATCTGCTGCATTTGCAGGCACTCAATACAGATACCACATGAAAGGCAGACCCGTATCACACTCCTGTCATA---GGTAT-TTTTACCACC--------------TCACTCATAACCTTCATAAATGGTAGTGAC----------------TCCTTTCTTAAGATTTTAGAT-ACATCAAGAGAAATATTCA----TCAATTCTACCTCTTCTCCCTGTCAAAATTCTCAGCCACTAAA-
s panTro5.chr15              63578163 368 +  83230942 AATATTTCATACCAAAACACCTCAAGAATA-TTGAAAGCACATGG-TCACTATAATTTTAACTCTCATC----ACTTACCTGTCAC-ACTGCTAACTGTATGGACTGTAAGGTCACCAATCTGATAAACTATAAAGGTCCCTCACAACctgtatct---------cagcactgccccagaatagtatctgctgcatttgcaggcactcaatacagatACCACATGAAAGGCAGACCCGTACCACACTCCTGTCACA---GGTAT-TTTTACCACC--------------TCACTCATAACCTTCATAAATGGTAGTGAC----------------TCCTTTCTTAAGATTCTAGAT-ACATCAAGAGAAATATTCA----TGAATTCTACCTCTTCTCCCTGTCAAAATTCTCAACCACTAAA-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80535101 368 +  99763055 AATATTTCATACCAAAACACCTCAAGAATA-TTGAAAGCACATGG-TCACTATAATTTTAACTCTCATC----ACTTACCTGTCAC-ACTGCTAACTGTATGGACTGTAAGGTCACCAATCTGATAAACTATAAAGGTCCCTCACAACCTGTATCT---------CAGCACTGCCCCAGAATAGTATCTGCTGCATTTGCAGGCACTCAATACAGATACTACATGAAAGGCAGACCCGTACCACACTCCTGTCACA---GGTAT-TTTTACCACC--------------TCACTCATAACCTTCATAAATGGTAGTGAC----------------TCCTTTCTTAAGATTCTAGAT-ACATCAAGAGAAATATTCA----TGAATTCTACCTCTTCTCCCTGTCAAAATTCTCAACCACTAAA-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       135258 368 -   1709092 AATATTTCATACCAAAACACCTCAAGAATA-TTGAAAGCACATGG-TCACTATAATTGTAACTCTCATC----ATTTACCTGTCAC-ACTGCTAACTGTATGGACTGTAAGCTCACCAATTTGATAAACTATAAAGGTCCCTCACAACCTGTATCT---------CAGCACTACCCCAGAATAGTATCTGCTGCATTTGCAGGCACTCAATACAGATACCACATGAAAGGCAGACCCGTATCACACTCCTGTCATA---GGTAT-TTTTACCACC--------------GCACTTATAACCTTCATAAATGGTAGTGAC----------------TCCTTTCTTAAGATTTTAGAT-ACATCAAGAGAAATATTCA----TCAATTCTACCTCTTCTCCCTGTCAAAATTCTCAGCCACTAAA-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17297202 366 - 121039945 AACATTTCATACCAAAACACCTCAAGAATA-TTGAAAGCACATGG-TCACTATAATTGTAACTCTCATC----ACTTACCTGTCAC-ACTGCTAACTGTATGGACTGTTAGCTCACCAATTTGATAAACTATAAAGGTCCTTCACAACctgtatct---------cagcactgccctagaatagtatctgctgcatttgcaggcactcaat--agataCCACATGAAAGGCAGACCCGTATCACACTCCTGTCATA---GGTAT-TTTTACCACC--------------TCACTCATAACCTTCATAAATGGTAGTGAC----------------TCCTTTCTTAAGATTTTAGAT-ACATCAAGAGAAATATTCA----TCAATTCTACCTCTTCTCCCTGTCAAAATTCTCAGCCACTAAA-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60971497 368 + 169600520 AATATTTCATACCAAAACAGCTCAAGAATA-TTGAAAGCACATGG-TCACTATAATCGTAACTCTCATC----ACTTACCTGTCAC-AATGCTAACTGTATGGACTGTTAGCTCACCAATTTGATCAACTATAAAGGTCCTTCACAACCTGTATCT---------CAGCAGTGCCCCAGCATAGTATCTGCTGCATTTGCAGGCACTCAATACAGATAACACATGAAAGGCAGACCCGTATCACACTCCTGTCATA---GGTAT-TTTTACCACC--------------TCACTCATAACCTTCATAAATGGTAGTGAC----------------TCCTTTCTTAAGCTTTTAGAT-ACATCAATAGAAATATTCA----TCAGTTCTACCTCTTCTCCCTGTCAAAATTCTCAGCCACTAAA-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108498221 368 - 171882078 AATATTTCATACCAAAACAGCTCAAGAATA-TTGAAAGCACATGG-TCACTATAATCGTAACTCTCATC----ACTTACCTGTCAC-AATGCTAACTGTATGGACTGTTAGCTCACCAATTTGATCAACTATAAAGGTCCTTCACAACCTGTATCT---------CAGCAGTGCCCCAGCATAGTATCTGCTGCATTTGCAGGCACTCAATACAGATAACACATGAAAGGCAGACCCGTATCACACTCCTGTCATA---GGTAT-TTTTACCACC--------------TCACTCATAACCTTCATAAATGGTAGTGAC----------------TCCTTTCTTAAGCTTTTAGAT-ACATCAATAGAAATATTCA----TCAGTTCTACCTCTTCTCCCTGTCAAAATTCTCAGCCACTAAA-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       114724 368 -   2311642 AATATTTCATACCAAAACAGCTCAAGAATA-TTGAAAGCACATGG-TCACTATAATCGTAACTCTCATC----ACTTACCTGTCAC-AATGCTAACTGTATAGACTGTTAGCTCACCAATTTGATCAACTATAAAGGTCCTTCACAACCTGTATCT---------CAGCAGTGCCCCAGCATAGTATCTGCTGCATTTGCAGGCACTCAATACAGACAACACATGAAAGGCAGACCCGTATCACACTCCTGTCATA---GGTAT-TTTTACCACC--------------TCACTCATAACCTTCATAAATGGTAGTGAC----------------TCCTTTCTTAAGCTTTTAGAT-ACATCAATAGAAATATTCA----TCAGTTCTACCTCTTCTCCCTGTCAAAATTCTCAGCCACTAAA-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       106803 368 -   1987038 AATATTTCATACCAAAACAGCTCAAGAATA-TTGAAAGCACATGG-TCACTATAATCGTAACTCTCATC----ACTTACCTGTCAC-ACTGCTAACTGTATGGACTGTTAGCTCACCAATTTGATCAACTATAAAGGTCCTTCACAACCTGTATCT---------CAGCAGTGCCCCAGCATAGTATCTGCTGCATTTGCAGGCACTCAATACAGATAACACATGAAAGGCAGACCCGTATCACACTCCTGTCATA---GGTAT-TTTTACCACC--------------TCACTCATAACCTTCATAAATGGTAGTGAC----------------TCCTTTCTTAAGCTTTTAGAT-ATATCAATAGAAATATTCA----TCAGTTCTACCTCTTCTCCCTGTCAAAATTCTCAGCCACTGAA-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21188319 368 -  24206276 AATATTTCATACCAAAACAGCTCAAGAATA-TTGAAAGCACATGG-TCACTATAACCGTAACTCTCATC----ACCTACCTGTCAC-ACTGCTAACTGTATGGACTGTTAGCTCACCAATTTGATCAACTACAAAGGTCCTTCACAACCTGTATCT---------CAGCAGTGCCCCAGCATAGTATCTGCTGCATTTGCAGGCACTCAATACAGATAACACATGAAAGGCAGACCCATATTACACTCCTGTCATA---GGTAT-TTTTACCACC--------------TCACTCATAACCTTCATAAATGGTAGTGAC----------------TCCTTTCTTAAGCTTTTAGAT-ACATCAATAGAAATATTCA----TCAATTCTACCTCTTCTCCCTGTCAAAATTCTCAGCCACTAAA-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       129784 368 -   1397330 AACATTTCATACCAAAACAGCTCAAGAATA-TTGAAAGCACATGG-TCACTATAATCGTAACTCTCATC----ACTTACCTGTCAC-ACTGCTAACTGTATGGACTGTTAGCTCACCAATTTGATTAACTATAAAGGTCCttcacaacctgtatct---------cagcagtgccccagcatagtatctgctgcatttgcaggcactcaatacagatAACACATGAAAGGCAGACCCGTATCACACTCCTGTCATA---GGTAT-TTTTACCACC--------------TCACTCATAACCTTCATAAATGGTAGTGAC----------------TCCTTTCTTAAGCTTTTAGAT-ACATCAATAGAAATATTCA----TCAGTTCTACCTCTTCTCCCTGTCAAAATTCTCAGCCACTAAA-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       128632 366 -   1784207 AACATTTCATACCAAAACAGCTCAAGAATA-TTGAAAGCACATGG-TCACTATAATTGTAACTCTCATC----ACTTATCTGTCAC-ACTGCTAACTGTATGGACTGTTAGCTCACCAATTTGATCAACTATAAAGGTCCTTCACAACCTGTATCT---------CAGCAGTGCCCCAGCATAGTATCTGCTGCATTTGCAAGCACTCAAT--AGTTACCACATGAAAGGCAGAACTGTATCACACTCCTGTCACA---GGTAT-TTTTACCACC--------------TCACTCATAACCTTCATAAATGGTAGTGAC----------------TCCTTTCTTAAGCTTTTAGAT-ACATCAACAGAAATATTCA----TCAATTCTACCTCTTCTCCCTGTCAAAATTCTCAGCCACTAAA-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22334197 377 + 158406734 AATATTTCAAACCAAGTGACCGT--GAATA-CTGAAAGCACACAG-TCACTTTAATTGTAGCTCTCATC----ACTTACCAGTCAC-ACTGCTAACTGTATGGACTGTTAGCTCACCAAATTAATAAACTATGAAAGTCCTTCACAACCTGTATCT---------CAGCAATGTCC-AGCACAGAATCTGCTGCATTTTCAGGCACTCAATGCAGATACCACATGAAAGGCAGCCCCTTACAATACTCCTGTCACG---GGTAT-TTTTACCACTTTATTATATTCTTATCAATCATAACCTCCATAAATTGAAGTGAC----------------TCCTTTCTTAAGCTTTTAGA--ACATCAAGAGAAATATTCAT---TCAATTCTACCTCTTCTCCCTGCCAAAATTCTCAGCCACT--A-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50569584 365 +  54856640 AACATTTCAAAGCAAGCCAGCTTAAGAACA-CTGAAAGCACACGG-TCACTTCAATTGTAGCTCTCATT----ACTTACCAGTCAC-ACTGCTAAGTGTAAGGACTGTTAGCTCACCAAATTAATAAACTATAGAAGTCCTTCATAACctgtatct---------cagcaatgtcc-agcacagaatctgccatatttgcaggcactcaatacagatACCACATGAAAGGCAGCCCCTTACAATACTCCTATCACA---GGTAT-TTTTACCACC--------------TCAGTCATAACCTCCACAAATGGAAGTAAC----------------TCCTTTCTTAAGCTTTTAGA--ACATCAAGAGAAATACTCAT---TCAATTCTACCTCTTCTCCTTGTCAAAATTCTCAGCCACT--A-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       722236 357 -   2910086 AATATTTCAAACCAAGACAGCTCAAGAATA-TTGAAAGCACACGG-TCACTTTAATTGTAGCTCTCATT----ACTTACTAGTCAC-ACTGTTAACTGTATGGGCTGTTAGCTCACCAAATTAATAAACTATATAAGTCCTTCATAACCTGTGTCT---------CAGCAATGTCC-AGCACAGAATCTGCTGCATTTGCAGGCACTCAATACAGATACCACATGAAAGGCAGCCCCTTATAATACTCCTGTCACA---GGTAT-TTT----ACC--------------TCAATCATAACCTCCATAAATGGAAGTAAC----------------TCCTTTCTTAAGCTTTTAGA--ACATCAAGAGAAATATTCAT---TCAATTCTACCTCTTC----TGTCAAAATTCTCAGCCACT--A-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40734004 365 +  42888418 AATATTTCAAACCAAGACAGCTCAAGAGTA-TCGAAAGCACACGG-TCACTTTAATTGTAGCTCTCATC----ACTTACCAGTCAC-ACTGCTAACTGTATGGACTGTTAGCTCACCAAATTAATAAACTATAAAAGTCCTTCATAACctgtatct---------cagcaatgtcc-agcacagaatctgctgcatttgcaggcactcaataaagatACCACATGAAAGGTAGCCTCTTATAATACTCCTGTCACA---GGTAT-TTTTACTACC--------------TCAATCACAACCTCCATAAATGGAAGTGAC----------------TCGTTTCTTAAGCTTTTAGA--ACATCAAGAGAAATATTCAT---TCAATTCTACCTGTTCTCCCTGTCAGAATTCTCAGCCACT--A-
i aotNan1.NW_018505940v1    C 0 C 0
s mm10.chr7                  81443401 352 + 145441459 AATATTTAATACCAAAATTGATCAAAAATAGTTGACAGCACATGA-TCACTGTAACTATAGCTTTTGTCCACAAATAACTAGTCAC---TATTCACTGCAAGTATCACTAACTCTACAATTTGATAAACTGTA-AGGCTGTTCACAGCCTATATCTATACTTCTGCAGCAGTACCCAACATTAAGATCTGCTATATTTTCAAGCTCTCAATATAGATACCATATGATAGCTAGATCCATATTATACTTCTGTCATA---GGTAC-TTTGGGCAAC--------------TTAAAAGT-ACTTGCATAAACAGTAATAG--------------------TTTCTTATGCTT-TAGA-------AATAG-GATATTCA-----------CACACTGTCTTC---TCAAAA--CTCAATGACTA---
i mm10.chr7                 I 243 C 0
s canFam3.chr3               54487307 382 +  91889043 AATATTTAATACCTTGACTGCTCAAAAATA-TCCAGAACACAGGA-TCACTGTAAATGTAGCTCTTGTC--ATATTTACTTGTCAA-ACTGTTAGCTATATGCACTGTTAGCTCTGT-GTTTGATATATGATA-AGGTCCTCCAAGGCCTTTATCT---------AAGCAGCACTC-AGCGTACTACCTGCAGCACTCCCAGGTACTCAATACACACAGCACAGGAAGGGCAGACCCACAGCACACCCCTTTCACA---GGTATGCTCCACCACT--------------TCGATCACAAGCTCCATCAATGGCAGTGACTCCTTCAATTTTTTTTTCCTTTCTTTAATCTTAAGACAAGATCAGAATCAATATTCAGTCATCAAGTTTATCTCTTC----TGTCAAAGCTCTAAGCCACA----
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1943600 360 +   3943991 AATATTTAAT----TGACTACTCAAGGATA-CCCAGAACACATAACTTACTGTAATTGTAGCTCTTGTT----AC--ACTGTTTACCACTGTTAGCTTTATGAATGATTAGCTC-TTACCTCGAT-AACTA---AGATTCTTGAAGGCCTGCATCT---------CAGCATCACTC-AGCATA-CATCTGCTACATTTGTGAGCACTCGACACAGACACAACATAAAAGGCAGATCCCTATCACACACCTTTCACAGATGATAT-TTTTACCACC--------------TCAATAACAATCCCCATAAATGATGATGAT----------------TCCTTTCTTCAGTTTTTAAACAAGATCAATAG--TCACTCA----ATAATTTTACCTCTTCTCACTGTCAAAGCTCTCAACCACTCAAA
i dasNov3.JH570731          C 0 C 0
e otoGar3.GL873530             723323   3 -  36342412 I

a score=914043.000000
s hg38.chr15_KI270850v1_alt    426035 72 +    430880 GTCATTTTGGGATTTGGGGTTTTAGGT---TTGGACCACAGACCATTCT-TCATCAATAAAAAAACAAAGGCTCCA
s panTro5.chr15              63578531 72 +  83230942 GTCATTTTGGGATTTGGGGTTTTAGGT---TTGGACCACAGACCATTCT-TCATCAATAAAAAAACAAAGGCTCCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80535469 72 +  99763055 GTCATTTTGGGATTTGGGCTTTTAGGT---TTGGACCACAGACCATTCT-TCATCAATAAAAAAACAAAGGCTCCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       135626 72 -   1709092 GTCATTTTGGGATTTGGGGTTTTAGGT---TTGGACCACAGACCATTCT-TCATCAATAAAAAAACAAAGGCTCCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17297568 72 - 121039945 GTCATTTTGGGATTTGGGGTTTTAGGT---TTGGACCACAGACCATTCC-ACATCAATAAAAGAACAAAGGCTCCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60971865 72 + 169600520 GTCATTTTGGGATTTGGGGTTTTAGGT---TTGGACCACAGACCATTCC-CCATCAATAAAAACACAAAGGCTCCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108498589 72 - 171882078 GTCATTTTGGGATTTGGGGTTTTAGGT---TTGGACCACAGACCATTCC-CCATCAATAAAAACACAAAGGCTCCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       115092 72 -   2311642 GTCATTTTGGGATTTGGGGTTTTAGGT---TTGGACCACAGACCATTCC-CCATCAATAAAAACACAAAGGCTCCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       107171 72 -   1987038 GTCATTTTGGGATTTGGTGTTTTAGGT---TTGGACCACAGACCATTCC-CCATCAATAAAAACACAAAGGCTCCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21188687 72 -  24206276 GTCATTTTGGGATTTGGGGTTTTAGGT---TTGGACCACAGACCATTCC-CCATCAATAAAAACACAAAGGCTCCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       130152 72 -   1397330 GTCATTTTGGGATTTGGGGTTTTAGGT---TTGGACCACAGACCATTCC-CCATCAATAAAAACACAAAGGCTCCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       128998 72 -   1784207 GTCATTTTGGGATTTGGGGTTTTAGGT---TTGGACCACAGACCATTCC-CCATCaataaaaacacaaaggctcca
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22334574 72 + 158406734 GTCATCTGGGGATTTGGGGCTTTAAGT---TTGGACCAGAGACCATTCC-ACACTGACAAAAAAACAAAGGCTCCA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50569949 71 +  54856640 GTCATTTTGGGATTTGGGGTTTTAAGT---TTGGACCACAGACCATTCC-ACATTGAC-AAAAAACAAAGGCTCCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       722593 71 -   2910086 GTCATTTTGGGATTTGGGGTTTTAAGT---TTGGACCACGGACCATCCC-ACATTGAC-AAAAAACAAAGGCTCCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40734369 71 +  42888418 GTCATTTTGGGATTTGGGGTTTTAAGT---TTGGACCACAGACCATTCC-ACATTGAC-AAAAAACAAAGGCTCCA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             723326 73 -  36342412 GCCAAGTCAAGATGTGGGGTTTTAAGT---TTGGACCAGAGACAATTCCAATATGAACAAAAAATCAAAGATTCCA
i otoGar3.GL873530          I 3 C 0
s mm10.chr7                  81443753 63 + 145441459 -----CTCAGAATTTAG-ATTTTAAGT---TTTGATCACAGAGAATTCC----TCAAACGAAACTCCAAGGCTCCA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54487689 73 +  91889043 GTCATTTCAGGATTTGGGGTTTTAAGTCCCTTGGACCAGAGACAATTC--ACATGAAC-AAAAAACAAAGAACCCA
i canFam3.chr3              C 0 I 5084
s dasNov3.JH570731            1943960 70 +   3943991 GTCATTTCCAGATTTGGGG-TTAAAAT---TCATATCAGAGACCATTCC-ACATAAAC-AAAAAACAAAGAACCCA
i dasNov3.JH570731          C 0 I 8949

a score=9815.000000
s hg38.chr15_KI270850v1_alt    426107 1 +    430880 G
s panTro5.chr15              63578603 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80535541 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       135698 1 -   1709092 G
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17297640 1 - 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60971937 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108498661 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       115164 1 -   2311642 G
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       107243 1 -   1987038 G
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21188759 1 -  24206276 G
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       130224 1 -   1397330 G
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       129070 1 -   1784207 g
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22334646 1 + 158406734 T
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50570020 1 +  54856640 G
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       722664 1 -   2910086 T
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40734440 1 +  42888418 G
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             723399 1 -  36342412 G
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81443816 1 + 145441459 G
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1991828 1 -   3943991 G
i dasNov3.JH570731          n 8949 C 0
e canFam3.chr3               54487762 5084 +  91889043 I

a score=5361210.000000
s hg38.chr15_KI270850v1_alt    426108 453 +    430880 AGTTGTCTCAGAGCTGTTCTTGGACCTGGTCTCCATCACCTCTCCATATAATGCTTCTCTGGCTGCCTtgatgcag----aagag----ggaacttggagtctgggattctgatttaagccccagtgctccattaactag-ggaactttgacca------------------------------------agattttcaatttctctaagcaggtcttt---tt----atttgtaatgtgagaatgacagagtctcata----aattctcctgaggaataaaagaaaCTAAAGGCTCTGG--ACAGTTGGTCTACAT----G-------ACCCTACTCTTGCCCTCACCAATTTGACACAGCTTCCATTACTATCCTTTTTCTGCACTTACTGACAAGGTATCCTTCTTCCTATTTAAAAAGCAATT------TTGGAGTCCATTTTTTCTCATACCCAC-AGGGCCTCTTGGT----TATACCTGCCACAGCTCTCA-----CACCTTT---GTAAACATCATCAGGTCTCTCCCATGTT
s panTro5.chr15              63578604 453 +  83230942 AGTTGTCTCAAAGCTGTTCTTGGACCTGGTCTCCATCACCTCTCCATATAATGCTTCTCTGGCTGCCTtgatgcag----aagag----ggaacttggagtctgggattccgatttaagccccagtgctccattaactag-ggaactttgacca------------------------------------agattttcaatttctctaagcaggtcttt---tt----atttgtaatgtgagaatgacagagtctcata----aattctcctgaggaataaaagaaaCTAAAGGCTCTGG--ACAGTTGGTCTACAT----G-------ACCCTACTCTTGCCCTCACCAATTTGACACAGCTTCCATTACTATCCTTTTTCTGCACTTACTGACAAGGTATCCTTCTTCCTATTTAAAAAGCAATT------TTGGAGTCCATTTTTTCTCATACCCAC-AGGGCCTCTTGGT----TATACCTGCCACAGCTCTCA-----CACCTTT---GTAAACATCATCAGGTCTCTCCCATGTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80535542 453 +  99763055 AGTTGTCTCAAAGCTGTTCTTGGACCTGGTCTCCATCACCTCTCCATATAATGCTTCTCTGGCTGCCTtgatgcag----aagag----ggaacttggagtctgggattccgatttaagccccagtgctccattaactag-ggaactttgacca------------------------------------agattttcaatttctctaagcaggtcttt---tt----atttgtaatgtgagaatgacaGAGTCTCATA----AATTCTCCTGAGGAATAAAAGAAACTAAAGGCTCTGG--ACAGTTGGTCTACAT----G-------ACCCTACTCTTGCCCTCACCAATTTGACACAGCTTCCATTACTATCCTTTTTCTGCACTTACTGACAAGGTATCCTTCTTCCTATTTAAAAAGCAATT------TTGGAGTCCATTTTTTCTCATACCCAC-AGGGCCTCTTGGT----TATACCTGCCACAGCTCTCA-----CACCTTT---GTAAACATCATCAGGTCTCTCCCATGTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       135699 453 -   1709092 AGTTGTCTCAGAGCTGTTCTTGGACCTGGTCTCCATCACCTCTCCATATAATGCTTCTCTGGCTGCCTtgatgcag----aagag----ggaacttggagtctgggattctgatttaagccccagtgctccattaactag-ggaactttgacca------------------------------------agattttcaatttctctaagcaggtcttt---tt----atttgtaatgtgagaatgacaGAGTCTCATA----AATTCTCCTGAGGAATAAAAGAAACTAAAGGCTCTGG--ACAGTTGGTCTACAT----G-------ACCCTACTCTTGCCCTCACCAATTTGACACAGCTTCCATTACTATCCTTTTTCTGCACTTACTGACAAGGTATCCTTCTTCCTATTTAAAAAGCAGTT------TTGGAGTCCATTTTTTCTCATATCCGC-AGGGCCTCTTGGT----TATACCTGCCACAGCTCTCA-----CACCTTT---GTAAACATCATCAGGTCTCTCCCATGTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17297641 429 - 121039945 AGTTGTCTCAGAGCTGTTCTTGAACCCGGTCTTCATCACCTCTCCATATAATGCTTCTCAGGCTGCCTtgatgcagaagaaagag----ggaacttggagtctgggattctgatttaagccccagtgctccattaactgg-ggaactttgacca------------------------------------agattttcaatttctctaagcaggtcttt---tt----atttgtaatgtgagaatgacaGAGTCTCATA----AATTCTCCTGAGGAATAAAAGAAACTAAAGGCTCCGG--ACAGTTGGTCTACAT----G-------ACCCTACTCTCGCCCTCACCAATTTGACACAGCTTCCATTAC----------------------------TATCCTTCTTTCTATTTAAAAAGCAATT------TTGGAGTCCATTTTTTCTCATACCCTC-AGGGCCTCTTGGT----TATCCCTGCCACAGCTCTCA-----CACCTTT---GTAAACATGATCAGCTCTCTCCCATGTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60971938 460 + 169600520 AGTTGTCTC--AGTTGTTCTCGGACCTGGTCTCCATTACCTCTCCGTATAAAGCTTCTCAGGCTGCCTtgatgcagaagaaagag----ggaacttggagtctgggattctgatttaagccccagtgctccattaattgggggaactttgacca------------------------------------atattctcaatttctctaagcaggtcttt---tt----ctttgtaatgtgagaatgacaGAGTCTCATA----AATTCTCCTGAGAAATAAAAGAAACTAAAGGCTCTGG--ACAGTTGGTCTACGT----G-------ACCCTACTCTTGCCCTCACCAATCTGACACAGCTTCCACTACTATCCTTTTTCTGCACTTACTGACAGGGTATCCTTCTTCCTATTTAAAGAGCAAGT------TTGGAGTAAATTTTTTCTCATACCCTC-AGGGCTTCTTGGTCAGTTATCCCTGCCACAACTCTCA-----CACCTTT---GTAAACATGATCAGCTCTCTCCCATGTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108498662 460 - 171882078 AGTTGTCTC--AGTTGTTCTCGGACCTGGTCTCCATTACCTCTCCGTATAAAGCTTCTCAGGCTGCCTtgatgcagaagaaagag----ggaacttggagtctgggattctgatttaagccccagtgctccattaattgggggaactttgacca------------------------------------atattctcaatttctctaagcaggtcttt---tt----ctttgtaatgtgagaatgacagagtctcata----aattctcctgaggaataaaagaaactaaaggctctgg--acagttggtctacat----g-------accctactcttgccctcaccaatctgacacagcttccactactatcctttttctgcactTACTGACAGGGTATCCTTCTTCCTATTTAAAGAGCAACT------TTGGAGTAAATTTTTTCTCATACCCTC-AGGGCTTCTTGGTCAGTTATCCCTGCCACAACTCTCA-----CACCTTT---GTAAACATGATCAGCTCTCTCCCATGTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       115165 460 -   2311642 AGTTGTCTC--AGTTGTTCTCGGACCTGGTCTCCATTACCTCTCCGTATAAAGCTTCTCAGGCTGCCTtgatgcagaagagagag----ggaacttggagtctgggattctgatttaagccccagtgctccattaattgggggaactttgagca------------------------------------atattctcaatttctctaagcaggtcttt---tt----ctttgtaatgtgagaatgacagagactcata----aattctcctgaggaataaaagaaaCTAAAGGCTCTGG--ACAGTTGGTCTACGT----G-------AACCTACTCTTGCCCTCACCAATCTGACACAGCTTCCACTACTATCCTTTTTCTGCACTTACTGACAGGGTATCCTTCTTCCTATTTAAAGAGCAAAT------TTGGAGTAAATTTTTTCTCATACCCTC-AGGGCTTCTTGGTCAGTTATCCCTGCCACAACTCTCA-----CACCTTT---GTAAACATGATCAGCTCTCTCCCATGTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       107244 461 -   1987038 AGTTGTCTCAGAGTTGTTCTCGGACCTGGTCTCCATTACCTCTCCGTATAAAGCTTCTCAGGCTGCCTtgatgcagaagaaagag----ggaacttggagtctgggattctgatttaagccccagtgctccattaattgggggaactttgacca------------------------------------atattctcaatttctctaagcaggtcttt---tt----ctttgtaatgtgagaatgacagagtctcata----aattctcctgaggaataaaagaaaCTAAAGGCTCTGG--ACAGTTGGTGTACGT----G-------ACCCTACTCTTGCCCTCACC-ATCTGACACAGCTTCCACTACTATCCTTTTTCTGCACTTACTGACAGGGTATCCTTCTTCCTATTTAAAGAGCAAAT------TTGGAGTAAATTTTTTCTCATACCCTC-AGGGCTTCTTGGTCAGCTATCCCTGCCACAACTCTCA-----CACCTTT---GTAAACATGATCAGCTCTCTCCCATGTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21188760 460 -  24206276 AGTTGTCTCAGAGTTGTTCTCGGACCTGGTCTCCATTACCTCTCCGTATAAAGTTTCTCAGGCTGCCTTGATGCAGAAGAAAAAG----GGAACTTGGAGTCTGGGATTCTGATTTAAGCCCCAGTGCTCCATTAATTGGAGGAACTTTGACCA------------------------------------ATATTCTCAATTTCTCTAAGCAGGTCTTT---TT----CTTTGTAATGTGAGAATGAC--AGTCTCATA----AATTCTCCTGAGGAATAAAAGAAACTAAAGGCTCTGG--ACAGTTGGTCTACAT----G-------ACCCTACTCTTGCCCTCGCCAATCTGACACAGCTTCCACTACTATCCTTTTTCTGCACTTACTGACAGGGTATCCTTCTTCCTATTTAAAGAGCAAAT------TTGGAGTTCATTTTTTCTCATACCCTC-AGGGCTTCTTGGTCAGTTATCCCTGCCACAACTCTCA-----CACCTTT---GTAAACATGATCAGCTCTCTCCCATGTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       130225 462 -   1397330 AGTTGTCTCAGAGTTGTTCTCGGACCTGGTCTCCATTACCTCTCCGTATAAAGCTTCTCAGGCTGCCTtgatgcagaagaaagag----ggaacttggagtctgggattctgatttaagccccagtgctccattaattgggggaactttgacca------------------------------------atattctcaatttctctaagcaggtcttt---tt----ctttgtaatgtgagaatgacagagtctcata----aattctcctgaggaataaaagaaactaaaggctctgg--acagttggtctacgt----g-------accctactcttgccctcaccaatctgacacagcttccactactatcctttttctgcactTACTGACAGGGTATCCTTCTTCCTATTTAAAGAGCAAAT------TTGGAGTAAATTTTTTCTCATACCCTC-AGGGCTTCTTGGTCAGCTATCCCTGCCACAACTCTCA-----CACCTTT---GTAAACATGATCAGCTCTCTCCCATGTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       129071 451 -   1784207 agttgtctcagagttgttcttggacctggtctccattacctctctgTATAAAGCTTCTCAGGCTGCCTtgatgcagaagaaagag----ggaacttggagtctgggattctgatttaagccccagtgctccattaattgggggaactttgacca------------------------------------atattttcaatttctctaagcaggtcttt---tt----ctt-----tgtgagaatgac--agtctcata----aattctcctgaggaataaaagaaactaaaggctctgg--acagttggtctacat----g-------accctactcttgccctcgccaatctgacacagcttccactactatccttttTCTGC----AATGACAGGGTATCCTTCTTCTTATTTAAAGAGCAAAT------TTGGAGTTCATTTTTTCTCATACCCTC-AGGGCTTCTTCGTCAGTTATCCCTGCCACACCTCTCA-----CACCTTT---GTAAACATGATCAGCTCTCTCCCATGTT
i colAng1.NW_012117110v1    C 0 I 220
s calJac3.chr6               22334647 458 + 158406734 AATTGTCTCAGAGCTGTTCCCTGACCTGGTCTCTATCATCTCTCCATATAATGCTTCTCAGGCTGCCTtgatgcagaaaaaagag----agagcttggagtctgggattctgatttaagccccagtgctctattaactgg-ggaactttgacaa------------------------------------agaatttcagtttctctaagcaggtcttt---tt----ctttgtaatctgaga---acaGAGTCCTATA----AATTCTCCTGAGGAATTTAAGAAACTAAAGGCTCTGG--ACAGTTGGTCTACAT----G-------ATCCTACTCTTGCCCTCACCAATTTGACATAGATTCCATTACTATCCTTTTTCTGCAGTTACTGACAGGGTATCCTTCTTCCTATTTAAAGAGCAATT------TTGGAGTGCATCTTTTCTCATACCCCC-AGGGCCTCCTGGTCAGTTATCCCTGCCACACTTCTCA-----CACCTTT---GTAAACATGATCAGCTCTCTCCCACATT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50570021 459 +  54856640 AGTTGTCTCAGACCTGTTCCCTGACCTGGTCTCTATCTTCTCTCCAT---ATGCTACTCAGGCTGCCTtgatgcagaagaaagag----ggagcttggagtctgggattctcatttaagccccagggctctattaactgg-ggaactttgacca------------------------------------agattttcagtttctctaagcaagtcttt---tt----ctttgtaatctgagaatgacaGAGTCTTATA----AATTCTCCTGAGGAATTTAAGAGACTAAAGACTCGGG--ACAGTTGGTCTACAC----G-------ATCCTACTCTTGCCCTCACCAATTTGACATAGATTCCATTACTATACTTTTTCTGCAGTTACTGACAGGGTATCCTTCTTCCTATTTAAAGAGCAATT------TTGGAGTCCATCTTTTCTCATACCCCCAAGAGCCTCCTGGTCAGTCATCCCTGCCACACTTCTCA-----CACCTTT---GTAAACATGATCTGCTCTCTCCCACGTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       722665 461 -   2910086 AGTTGTCTCAGAGCTGTTCCCTGACTTGGTCTCTATCATCTCTCCATATAATGCTTCTCAGGCTGCCTTGATGGAGAAGAAAGAG----GGAGCTTCGAGTCTGCGATTCTGATTTAAGCCCCAGTGCTCTATTAACTGG-GGAACTCTGACCA------------------------------------AGATTTTCAGTTTCTCTAAGCAGGTCTTT---TT----CTTTGTAATCTGAGAATGACAGGGTCTTATA----AATTCTCCTGAGGAATTTAAGAAACTAAAGGCTCTGG--ACAGTTGGTCTACAC----G-------ATCCTACTCTTGCCCTCACTAATTTGACATAGATTCCATTACTATCCTTTTTCTGCAGTTACTGACAGGGTATCCTTCTTCCTATTTAAAGAGCGATT------TTGGAGTCCATCTTTTCTCATACCCCA-AGGGCCTCCATGTCAGTTATCCCTGCCACATTTCTCA-----CACCTTT---GTAAACATGATCAGCTCTCTCCCACGTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40734441 461 +  42888418 AGTTGTCTTAGAGCTGTTCCCTGACCTGGTCTCTATCATCTCTCCATATAATGCTTCTCAGGCTGCCTtgatgcagaagaaagag----ggagcttggagtctgggattcggatttaagccccagtgctctattaactgg-ggaactttgacca------------------------------------agattttcagtttctctaagcacgtcttt---tt----ctttgtaatctgagaatgacagtgtcttata----aattctcctgaggaatttaagaaactaaAGGCTCTGG--ACAGTTGGTCTACAT----G-------ACCCTACTCTTGCCCTCACCAATTTGACATAGATTCCATTACTATCCTTTTTCTACAGTTACTGACAGGGTATCCTTCTTCCTATTTAAAGAGCGATT------TTGGAGTCCATCTTTTCTCATACCCCC-AGATCCTCCTGGTCAGTTATCCCTGCCACACTTCTCA-----CACCTTT---GTAAACATGATCAGCTCTCTCCCACGTT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             723400 463 -  36342412 AGTTGTCTTAGAGCAGTTTTCTGACCTGCTCTCCATCACCTCTCC--AGAGAGTTTCTCAAACTGCCTTAATGCAG--GAAGAAG----ATAGTTTTGAGTCTAGGATTCCACTTTGAGTCTCAATGCTCCATTACCTTA-CTCAGTTTGATCA------------------------------------AGATTTTCAACTTCTCCAAGCATGCCTTT---TT----CTCTGTAATGTGCGAACAACAGAGCGTC--A----AATTCTCATGAGGAACAAAACAACTAAAAGGCTCTGG--AGAATTGGT-TATAT----GGGTATAAGTCCCATTCTTGGCCTCCCCAATTTGACGTAACTTCTATTACCATCCCTTTCCCCCAGTTAATAAATGAGTGTCCTTCT---AACTCAAAGAGCAGTA------TTGGAGTGCATCTTTTCTTACAGCCTC-AGGACCTCTTGGTCAGTTATCCCTCTCACAGAGCTCATCTACCGTACTT---GTAAGCATGATCAGCTCTCTCTCACATT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81443817 411 + 145441459 AGCTATGTCAGAGTTGTTTCCCAAACTCCTCTC------CTCTCCA---AGTGTTTCTCAAACTGCC-TGATGTAGAAAGAAGGGAAAAGGAACCTGAAGTTTGGGACCTCAATTTTAATCCTAGAGCTCTA---------TAAACTTCAGCCA------------------------------------AGATTTTCAATTTAGCCAAGCATACCTTT---TC----ATTCATGAT-----AATGAC--AGTCTCAAAAAATAATTGTTGTTAG------AAGATACTGAAGGCCCTAG--ACAACCGGTCATCTA----G-------GTTCTTCTATT--------CATTCTGACATAACT----CTATTATCTTTT-----CCTCTACTACCAAAGAA--ATGAGTTCTA-TTAAAGAACAGTT------TTGA----CATTCT-----ACACCTTT-GGGATCTCTTGAT-AATTATTACTTCAGTTACACATT-----CATCTTTTCAGTGAACAGGATCAACTCCCTTCAAATTT
i mm10.chr7                 C 0 C 0
s canFam3.chr3               37397479 488 -  91889043 AGTTGCCACAGAGCAGTTCCCTGACCTG--CCCTATCTCCTCTCT---------TTTTCCGGCTTCCTTTAtgcag-agaaagaa----gacatttggagtctgggatcctcatttgagtccttgtgctctgtcaactggttgATTTTTGAGGAAGATTTTCAAtttcctttttttttttttttttttttAGATTTTCAATTTCTTTAAGCATGTCGTG---TTAATACTTTGCAATGTGAGATGGATACAGACTTACA---------TTGTTTAGGCTAAGAGACACTCTCAGCTCTG----CAGTTGGTCATCTA----G-------TTGGTGTTCTTGCCTTCTCCAATTGGACTT-GCTCTCATTA-TATTCTTTATCTTCAGCTATTGCAGGAGTGGCCTTCTCCCGGTTCAGAGAGCAGTTTGTGCATTGGAGTCCATCTT-TCTCACACCCTC-AGGACCTTTTGGTACATTGTTTCTGCCACACCTTTCA-----CCTCTGTTG-GTGAACACGATTACTTCTCTCCTTTGTT
i canFam3.chr3              n 5084 C 0
s dasNov3.JH570731            1991829 439 -   3943991 ATTTGTCTCAGAGCAGTTGCCTGACCTGGTCTCCATT-----------TAGAGTTTCTCA----GTCTTAATGCAGAAGGAACAG----GGAATTTGGCATTGGGGATCCTTATTTGAACTCTAGTG-TCTATAGAGTGC-----CTTTGAGCA------------------------------------AAATTTTCCATTTCTCTAAGCATGTCTTTATCTT----TTTTGTTAGGTGAGAATGAT--AGTCT--------CATTCTTGTGAAGAACAAAAGAGACTGAAGGCTCTGGAAACCATTGGTCTTCATTATAG-------GCCCTATTCTTGCCTTCCACAATTGGACTTATTGTCCTTCACTATCCTTTTTCTCCTATTACTGAAGAAGTGTCTTTCTCCCTATCCAAAGAGAAGTTTGTGCTTTGGAACTCATCTTTTCTCATATCCTC---------TTGGTCAATTATCCCTGCGACAACTTT-------CACCTCT---GTAAACGTGATTAGTTCTCTTC-ATGTT
i dasNov3.JH570731          C 0 C 0

a score=2034791.000000
s hg38.chr15_KI270850v1_alt    426561 165 +    430880 TAGAACTTTTCTTAACCCTGCTCTTCCCTCTAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CCCATCAGCCCTCCGTACGGAG-------T----A-------CCCCATCTCTACGG--CCT-----TTACTCATCTCTTTAA-CCCTCGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCTAT
s panTro5.chr15              63579057 165 +  83230942 TAGAACTTTTCTTAACCCTGCTCTTCCCTCTAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CCCATCAGCCCTCCGTACAGAG-------T----A-------CCCCATCTCTACGG--CCT-----TTACTCATCTCTTTAA-CCCTCGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCTAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80535995 165 +  99763055 TAGAACTTTTCTTAACCCTGCTCTTCCCTCTAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CCCATCAGCCCTCCGTACAGAG-------T----A-------CCCCATCTCTACGG--CCT-----TTACTCATCTCTTTAA-CCCTCGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCTAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       136152 165 -   1709092 TAGAACTTTTCTTAACCCTGCTCTTCCCTCTAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CCCATCAGCCCTCTGTACAGAG-------T----A-------CCCCATCTCTACGG--CCT-----TTACTCATCTCTTTAA-CCCTCGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCTAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17298070 165 - 121039945 TATAATTTTTCTTAACCCTGCTCTTCCCTCTAGTAGCCAGCC----TGTCATTCCCTAGCATC--CCCATCAGCCCTCCATACAGAG-------T----A-------CCCCATCTCTACAG--CCT-----TTACTCATCTCTTTAA-TCCTCGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCTAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60972398 160 + 169600520 TAGAACTTTTCTTAACCCTGCTCTT-----TAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CCCATCAGCCTTCCGTATAGAG-------T----A-------CCCCATTTCTACCG--CCT-----TTACTCATCTCTTTAA-TCCTTGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCTAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108499122 160 - 171882078 TAGAACTTTTCTTAACCCTGCTCTT-----TAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CCCATCAGCCTTCCGTATAGAG-------T----A-------CCCCATCTCTACCG--CCT-----TTACTCATCTCTTTAA-TCCTCGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCTAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       115625 160 -   2311642 TAGAACTTTTCTTAACCCTGCTCTT-----TAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CCCATCAGCCTTCCATATAGAG-------T----A-------CCCCATCTCTACCG--CCT-----TTACTCATCTCTTTAA-TCCTTGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCTAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       107705 160 -   1987038 TACAACTTTTCTTAACCCTGCTCTT-----TAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CCCATCAGCCTTCTGTATAGAG-------T----A-------CCCCATCTCTACCG--CCT-----TTACTCATCTCTTTAA-TCCTTGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCTAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21189220 165 -  24206276 TAGAACTTTTCTTAACCCTGCTCTTTCCTCTAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CCCATCAGCCTTCCATATAGAG-------T----A-------CCCCATCTCTACCA--CCT-----TTACTCATCTCTTTAA-TCCTTGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCTAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       130687 160 -   1397330 TACAACTTTTCTTAACCCTGCTCTT-----TAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CCCATCAGCCTTCTGTATAGAG-------T----A-------CCCCATCTCTACCG--CCT-----TTACTCATCTCTTTAA-TCCTTGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCTAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       129742 165 -   1784207 tAGAACTTTTCTTAACCCTGCTCTTTCCTCTAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CCCATCAGCCTTCCGTATAGAG-------T----A-------CCCCATCTCTACTG--CCT-----TTACTCATCTCTTTAA-TCCTTGAAGGCAAGCATCAGATGCTTCTCTCCCTTTCCACACATGCTAT
i colAng1.NW_012117110v1    I 220 C 0
s calJac3.chr6               22335105 165 + 158406734 TAGAATTTTCCTTAATCTTGCGCTTCCCTCTAGTAGCCAGCC----TGTCTTTCCCTAGCGTC--CACATCAGCCTTCCATATACAG-------T----A-------CCCCATCTCTACTG--CCT-----CTACTCATCTCTTTAA-TCCTTGAAGGCAAGCATCAAATGCTTCTCTCCCTTTCCGCACATGCTAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50570480 160 +  54856640 TACAACTTTCCTTAACCCTGTGCTTCCCTCTAGTAGCTAGTC----TGTCTTTCCCTAGCATC--CACATCAGCCTTCCATACACAG-------T----A-------CCCCATCTCTACTG--CCT-----TTACTCATCTCTTTAA-TCCTTGAAGGCAAGCATCAAATGCTTCTCTCCCTTTCCACACTT-----
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       723126 165 -   2910086 TAGAGCTTTCCTTAACCCTGCGCTTCCCTCTAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CACATCAGCCTTCCATACACAG-------T----A-------CCCCATCTCTACTG--CCT-----CTACTCATCTCTTTAA-TCCTTGAAGGCAAGCATCAAATGCTTCTCTCCCTTTCCACACATGCTAC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40734902 165 +  42888418 TAGAACTTTCCTTAACCCTGCGCTTCCCTCTAGTAGCCAGCC----TGTCTTTCCCTAGCATC--CGCATCAGCCTTCCATACACAG-------T----A-------CCCCATCTCTACTG--CCT-----CTACTCATCTCTTTAA-TCCTTGAAGGCAAGCATCAAATGCTTCTCTCCCTTTCCACACATGCTAT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             723863 176 -  36342412 TAGCCCTTTCCTTCACCTTACTCTC-CCTCCTGCAGCCAGTCTCCTTGTCTTTTCTCAGTTTC--CCCATCAGGCTTCTGTACAGAG-------TAACCA-------CCCTGTCTGTGTTG--CCTCACCCTTACTTCTCCCTTTAA-TCCTTGAAGTAAAGCATCAGATGCTTCT-TCCCATTCCACACATGCATT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81444228 151 + 145441459 TAGACTGTTCCTTAGCCCCACACTCCCCTCTGGT------------AGTCTTCTTCTAGCTTC-------------TCTGTACAGAAACCTATTT----C-------CTCTAACTCCCACA--CCC-----TTGCTTATCTCTTTAA-TCCTTGAAGTTAAACATCAGATGCCACTCTCC--TTCCCAACGTGTTAT
i mm10.chr7                 C 0 I 331
s canFam3.chr3               37397967 180 -  91889043 TAGACCTTACTTTAGTACAGCACTCCCCTCAAGCAGTCAGCCTCAGTGGCTTTGCTTGGCTTTTTCCCATCAAACTTTTGTACATAG-------T----ACCTCCCTCCCCATTTTGGCCTGCCCT-----TTGCTCATCTCTTAAA-TCCTTGATATCTGACATCAGATGCTCCTTTCCTGTCTCACATGTGCATT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1992268 172 -   3943991 TAGACCTATCCTTAGTCCCACTCTCCCCTCCAGTAGCCACTCTCAGTGTCTTTCTTTAGCTTC--CCCATAAG-CTTAGGTA-AGAA-------T----A----AAGCCCCGGCTCCACTG--CCT----CCCCCTTATTTATCTAATTCCTTGATGTCTGGCATCAGATACTCCTCTCCCTTTCTACCCAAGCTCT
i dasNov3.JH570731          C 0 C 0

a score=220420.000000
s hg38.chr15_KI270850v1_alt    426726 24 +    430880 TCTGAAACAC-TTTTTTTCAAACCA
s panTro5.chr15              63579222 24 +  83230942 TCTGAAACAC-TTTTTTTCAAACCA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80536160 24 +  99763055 TCTGAAACAC-TTTTTTTCAAACCA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       136317 24 -   1709092 TCTGAAACAC-TTTTTTTCAAACCA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17298235 24 - 121039945 TCTGAAACAC-TTTTTTTCAAACCA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60972558 25 + 169600520 TCTGAAACACTTTTTTTTCAAACCA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108499282 25 - 171882078 TCTGAAACACTTTTTTTTCAAACCA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       115785 25 -   2311642 TCTGAAACACTTTTTTTTCAAACCA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       107865 25 -   1987038 TCTGAAACACTTTTTTTTCAAACCA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21189385 25 -  24206276 TCTGAAACACTTTTTTTTCAAACCA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       130847 25 -   1397330 TCTGAAACACTTTTTTTTCAAACCA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       129907 25 -   1784207 TCTGAAACACCTTCTTTTCAAACCA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22335270 22 + 158406734 TCTGAAACAC---TTTTTCAAAACA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50570640 12 +  54856640 -------------TTTTTCAAACCA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       723291 24 -   2910086 TCTGAAACAC-TTTTTTTCAAACCA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40735067 24 +  42888418 TCTGAAACAC-TTTTTTTCAAACCA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             724039 19 -  36342412 TCTGAAAGGC-TTTTT-----ACCA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               37398147 17 -  91889043 TCTGAAAC---TTTTTCCCA-----
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1992440 17 -   3943991 TCTGAAAC---TTGTTACCA-----
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81444379 331 + 145441459 I

a score=2303515.000000
s hg38.chr15_KI270850v1_alt    426750 182 +    430880 AGTTCACTGTGCCTTATCAAATCCTATGGACATTTCCTGAGCCTTTTAAGACGTCTTCATTCCTGCCTGGATATTCTTACAGG---ATCTCTGGAAAGTACAAATCTAATCACCTACTCCAGAGGGcagtggtccacaaactttttggtctgaggactcctttatactcttaaaaat--tactgagg
s panTro5.chr15              63579246 182 +  83230942 AGTTCACTGTGCCTTAACAAATCCTATGGACATTTCCTGAGCCTTTTAAGAGGTCTTCATTCCTGCCTGGATATTCTTACAGG---ATCTCTGGAAAGTACAAATCTAATCACCTACTCCAGAGGGcagtggtccacaaactttttggtctgaggactcctttatactcttaaaaat--tactgagg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80536184 182 +  99763055 AGTTCACTGTGCCTTATCAAATCCTATGGACATTTCCTGAGCCTTTTAAGAGGTCTTCATTCCTGCCTGGATATTCTTACAGG---ATCTCTGGAAAGTACAAATCTAATCACCTACTCCAGAGGGcagtggtccacaaactttttggtctgaggactcctttatactcttaaaaat--tactgagg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       136341 182 -   1709092 AGTTCACTGTGCCTTATCAAATCCTATGGACATTTCCTGAGCCTTTTAAGAGGTCTTCATTCCTGCCTGGATATTCTTACAGG---ATCTCTGGAAAGTACAAATCTAATCACCTACTCCAGAGGGcagtggtccacaaactttttggtctgaggactcctttatactcttaaaaat--tactgagg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17298259 182 - 121039945 AGTTCACTGCGCCTTATCAAATCCTATGGACATTTCCTGAGCCTTTTAAGAGGTCTTCATTCCTGCCTGGATATTCTTACAGG---ATCTTTGGAAAGTACAAATCTAATCACCTACTCCAGAGGGcagtggtccacaaacattttggtctggggactcctttatactcttaaaaat--gactgagg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60972583 182 + 169600520 AGTTCACTGTGCCTTATCAAATCCTATGGACATTTCCTGAGCCTTTTAAGAGGTCTTCATTCCTACCTGGATATTCTTACAGG---ATCTTTGGAAAGTACAAATCTAATCACCTACTCCAGAGGGcagtggtccacaaccatgttggtctcaggactcctttatactcttaaaaat--tactgagg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108499307 182 - 171882078 AGTTCACTGTGCCTTATCAAATCCTATGGACATTTCCTGAGCCTTTTAAGAGGTCTTCATTCCTACCTGGATATTCTTACAGG---ATCTTTGGAAAGTACAAATCTAATCACCTACTCCAGAGGGcagtggtccacaaccatgttggtctcaggactcctttatactcttaaaaat--tactgagg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       115810 181 -   2311642 AGTTCACTGTGCCTTATCAAATCCTATGGACATTTCCTGAGCCTTTTAAGAGGTCTTCATTCCTACCTGGATATTCTTACAGG---ATCTTTGG-AAGTACAAATCTAATCACCTACTCCAGAGGGcagtggtccacaaccatgttggtctcaggactcctttatactcttaaaaat--tactgagg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       107890 182 -   1987038 AGTTCACTGTGCCTTATCAAATCCTATGGACATTTCCTGAGCCTTTTAAGAGGTCTTCATTCCTACCTGGATATTCTTACAGG---ATCTTTGGAAAGTACAAATCTAATCACCTACTCCAGAGGGcagtggtccacaaccatgttggtctcaggactcctttatacttttaaaaat--tactgagg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21189410 182 -  24206276 AGTTCACTGTGCCTTATCAAATCCTATGGACATTTCCTGAGCCTTTTAAGAGGTCTTCATTCCTACCTGGATATTCTTACAGG---ATCTTTGGAAAGTACAAATCTAATCACCTACTCCAGAGGGcagtggtccacaaccatgttggtctcaggactcctttatactcttaaaaat--tactgagg
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       130872 182 -   1397330 AGTTCACTGTGCCTTATCAAATCCTATGGACATTTCCTGAGCCTTTTAAGAGGTCTTCATTCCTACCTGGATATTCTTACAGG---ATCTTTGGAAAGTACAAATCTAATCACCTACTCCAGAGGGCATTggtccacaaccatgttggtctcaggactcctttatactcttaaaaat--tactgagg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       129932 182 -   1784207 AGTTCACTGTGCCTTATCAAATCCTATGGACATTTCCTGAGTCTTTTAAGAGGTCTTCATTCCTACCTGGATATTCTTACAGG---ATCTTTGGAAAGTACAAATCTAATCACCTACTCCAGAGGGcagtggtccacaaccatgttggtctcaggactcctttatactcttaaaaat--tactgagg
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22335292 181 + 158406734 AGTTCACTGTGCCTTATCAAATCCTATGGACATACCCTGAGCCTTTTAAGAGGTCTTCATTCCTGTTTGGATGTTCCTACAGG---ATCTTTGAAAAGTACAAATTTAATCACCTACTCCAGAGGGcagtggtccacaaacattttggtctcagcactcctttatactctt-aaaat--tagtgagg
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50570652 181 +  54856640 AGTTCACTGTGCCTTATCAAATCCTATGGACATACCCTGAGCCTTTTAAGAGGACTTCATTACTGTTCAGATGTTCCTACAGG---ATCTTTGAAAAGTACAAATTTAATCACCTATTCCAGAGGGcagtggtccacaaacattttggtctcaggactcctttatacgctt-aaaat--tagtgagg
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       723315 174 -   2910086 AGTTCACTGTGCCTTATCAAATCCTATGGACATACCCTGAGACTTTTAAGAGGTCTTCATTACTGTTCCGATGTTCCTACAGG---ATCTTTGAAAAGTACAAATTTAATCACCTACTCCAGAGGGcagtggtccacaaacattttggt-------ctcctttatactctt-aaaat--tactgagg
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40735091 181 +  42888418 AGTTCACTGTGCCTTATCAAATCCTATGGGCATACTCTAAGCCTTTTACGAGGTCTTCATTCCTGTTTGGATGTTCCTACAGG---ATCTTTGAAAAGTACAAATTTAATCACCTACTCCAGAGGGcagtggtccacaaacattttggtctcaggactcctttatactctt-aaaat--tactgagg
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             724058 177 -  36342412 ACACCACTGTGC--TATCAAGTCCTAGGCACATTTCTTGAGCCTTTTAAGATGCTTTCATTCCTGTTCAGATGCTATTA---G---AGCACTGAAAAACATGAATCTGACCACCTACTCCCTAGAGCAGTGGTTCCCAAACATTTTAAGGTTAGGACTCCTTTATACTCTTTAAAAT--TACAGAGG
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81444710 174 + 145441459 AGTTCACTGTGCTGTATAAAAACCAATGAGCAATTCTTGAACCTTTCAAGATATTTTC-TTTCTGCATGTACGTTCCTATCAATACACCTTTGAAAAATACAAATAAGCAAACATCCTGTATAGGACAACTTTTCAC-----------TCTCAGAA-TTCTTTACACCTCTAACATTCCTACAGATG
i mm10.chr7                 I 331 C 0
s canFam3.chr3               37398164 156 -  91889043 AGTACACTGTGCCGT---------TAGGAGCATTTCTTCAGGCTTTATGGATGTTTGTATTTCTGCCTGGATGTTCCTATATG---ATCTTTGAAAAGTGCCAGTTTGATTACCTGTT--GTAATGCAGGGGTTCTCAGACATTTTCATCTCAGACTTCC---------------AT--TACTGAGG
i canFam3.chr3              C 0 I 50
s dasNov3.JH570731            1992457 182 -   3943991 AGTTTAACATGACCTTTTAAAATCTATGGACATTTCTTGAGCCTTTCAAGATGTTTTCATTCCTGCTTGGGTGTTCCTATAAG---ATTTTTGAAAATTGTAAATCTGCTCACCTTCTCCATGGGGcagtggttctcagacattttggtcttgggaatcctttacactcttaataat--tcattggg
i dasNov3.JH570731          C 0 C 0

a score=135905.000000
s hg38.chr15_KI270850v1_alt    426932 16 +    430880 taattttaagtac------ttt
s panTro5.chr15              63579428 16 +  83230942 taattttaagtac------ttt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80536366 22 +  99763055 taattttaagtacttttaattt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       136523 22 -   1709092 taattttaagtacttttaattt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17298441 22 - 121039945 taattttaagtaattttaattt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60972765 22 + 169600520 taattttaagtactttcaattt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108499489 22 - 171882078 taattttaagtactttcaattt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       115991 22 -   2311642 taattttaagtactttcaattt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       108072 22 -   1987038 taattttaagtactttcaattt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21189592 22 -  24206276 taattttaagtactttcaattt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       131054 22 -   1397330 taattttaagtactttcaattt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       130114 22 -   1784207 taattttaagtactttcaattt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22335473 16 + 158406734 taattttaagcac------ttt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50570833 16 +  54856640 taattttaagcac------ttt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       723489 16 -   2910086 taattttaagcac------ttt
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40735272 16 +  42888418 taattttaagcac------ttt
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             724235 19 -  36342412 --ACTTCAAAAGGTTTCA-TTA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81444884 15 + 145441459 -GATCTTAAGAGCTCT------
i mm10.chr7                 C 0 I 1844
s dasNov3.JH570731            1992639  6 -   3943991 -gacctt---------------
i dasNov3.JH570731          C 0 C 0
e canFam3.chr3               37398320 50 -  91889043 I

a score=169526.000000
s hg38.chr15_KI270850v1_alt    426948 17 +    430880 taattactcaagagctt
s panTro5.chr15              63579444 17 +  83230942 taattactcaagagctt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80536388 17 +  99763055 taattactcaagagctt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       136545 17 -   1709092 taattactcaagagctt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17298463 17 - 121039945 taattactcaagagctt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60972787 17 + 169600520 taattactcaaaagctt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108499511 17 - 171882078 taattactcaaaagctt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       116013 17 -   2311642 taattactcaaaagctt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       108094 17 -   1987038 taattactcaaaagctt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21189614 17 -  24206276 taattactcaaaagctt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       131076 17 -   1397330 taattactcaaaagctt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       130136 17 -   1784207 taattactcaagagctt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22335489 17 + 158406734 gaattactcaagagctt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50570849 17 +  54856640 gaattactcaagagctt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       723505 17 -   2910086 gaattactcaagagctt
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40735288 17 +  42888418 gaattactcaagagctt
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             724254 12 -  36342412 AGATTGATCACA-----
i otoGar3.GL873530          C 0 C 0
s dasNov3.JH570731            1992645  6 -   3943991 -----------gagctt
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81444899 1844 + 145441459 I
e canFam3.chr3               37398320 50 -  91889043 I

a score=476081.000000
s hg38.chr15_KI270850v1_alt    426965 46 +    430880 tttgtgtaagtaggtca----ta----tgaatattcacccattagaaattaaaa
s panTro5.chr15              63579461 46 +  83230942 tttgtgtaagtaggtca----ta----tcaatattcacccattagaaattaaaa
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80536405 46 +  99763055 tttgtgtaagtaggtca----ta----tcaatattcacccattagaaattaaaa
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       136562 46 -   1709092 tttgtgtaagtaggtca----ta----tcaatattcacccattagaaattaaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17298480 46 - 121039945 tttgtctaagtaggtca----ta----tcaatattcacccattagaaatttaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60972804 46 + 169600520 tttgtgtaagtagctca----ta----tcaatatgcacccactagaaatagaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108499528 46 - 171882078 tttgtgtaagtagctca----ta----tcaatatgcacccactagaaatagaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       116030 46 -   2311642 tttgtgtaagtagctca----ta----tcaatatgcacccactagaaatagaaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       108111 46 -   1987038 tttgtgtaagtaggtca----ta----tcaatatgcacccactagaaatacaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21189631 46 -  24206276 tttgtgtaagtaggtca----ta----tctatatgcacccattagaaatagaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       131093 46 -   1397330 tttgtgtaagtaggtca----ta----tcaatatgcacccactagaaatacaaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       130153 46 -   1784207 tttgtgtaagtaggtca----ta----tcaatatgcacccattagaaatagaaa
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22335506 46 + 158406734 tttgtgtaagtagagca----tt----tcaatattcgcccatcagaaataaaag
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50570866 46 +  54856640 tttgtgtaagtagagca----ta----tcaatattcagccattagaaataaaag
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       723522 46 -   2910086 tttgtgtaagtagagta----ta----tcaatattcacccattagaaataaaag
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40735305 46 +  42888418 tttgtgtaagtagaaca----ta----tcaatattcacccattagaaataaaag
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             724266 31 -  36342412 ---------------CA----TA----TCAATATTTATCCATTGGAAGCTGAAA
i otoGar3.GL873530          C 0 I 1806
s canFam3.chr3               37398370 50 -  91889043 Cttgtgtatgtggattgtgttta----ttgatatttgcccattagaaattaaaa
i canFam3.chr3              I 50 C 0
s dasNov3.JH570731            1992651 45 -   3943991 -ttgt-tatgtggatca----tatctttcaatattt--ttattaaaattggaa-
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81444899 1844 + 145441459 I

a score=2518758.000000
s hg38.chr15_KI270850v1_alt    427011 240 +    430880 ag----ggg---tagatttattaaccatt---aaaa----aaac----ct-attacatattaacacaat--g-----------attttccaagac-aaaaa-aaatttatggagtg-gca------ttgacatttttgcagatctctttagtatctggtttaatataagatagcgggattttctggtctgtttctgtatttaatgtgttgtcatgtgttattctggttgaagtatatgaagaaaatccagcctcacacagat-acatagttgg-aaaaaggag-
s panTro5.chr15              63579507 240 +  83230942 ag----ggg---tagatttattaaccatt---aaaa----aaac----ct-attacatattaacacaat--g-----------attttccaagac-aaaaa-aaatttatggagtg-gca------ttgacatttttgcagatctctttagtatctggtttaatataagatagcgggattttctggtctgtttctgtatttaatgtgttgtcatgtgttattctggttgaagtatatgaagaaaatccagcctcacacagat-acatagttgg-aaaaaggag-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80536451 239 +  99763055 ag----ggg---tagatttattaaccatt----aaa----aaac----ct-attacatattaacacaat--g-----------attttccaagac-aaaaa-aaatttatggagtg-gca------ttgacatttttgcagatctctttagtatctggtttaatataagatagcgggattttctggtctgtttctgtatttaatgtgttgtcatgtgttattctggttgaagtatatgaagaaaatccagcctcacacagat-acatagttgg-aaaaaggag-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       136608 241 -   1709092 ag----ggg---tagatttattaaccact---aaaa----aaac----ct-attacatattaacacaat--g-----------attttccaagac-aaaaagaaatttatggagtg-gca------ttgacatttttgcaaatctctttagtatctggtttaatataagatagcgggattttctggtctgtttctgtatttaatgtgttgtcatgtgttattctggttgaagtatatgaagaaaatccagcctcacacagat-acgtagttgg-aaaaaggag-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17298526 240 - 121039945 ag----ggg---tagatttattaaccatt---aaaa----aaac----cg-attacatattaacacaat--c-----------attttccaagac-aaaaa-aaatttatggagtg-gca------ttgacatttttgcaaatctctttagtatatggtttaatataagatagcgggattttctggtctgtttctgtatttaatatgttgtcatgtgttattctggctgaagtatatgaagaaaatccagcctcacacagat-acgtagttgg-aaaaaggag-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60972850 242 + 169600520 ag----ggg---tagatttattaatcatta--aaaa----aaac----ct-attacatattaacacagt--g-----------attttccaagac-aaaaaataatttatggaatg-gca------ttgacatttttgcaaatctctttactatctggtttaatataagatagcgggattttctggtctgtttctgtatttaatttgttgtcatgtgttattctggttgaagtatatgaagaaaatccagcctcacacggat-acgtagttgg-aaaaaggag-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108499574 241 - 171882078 ag----ggg---tagatttattaatcatt---aaaa----aaac----ct-attacatattaacacaat--g-----------attttccaagac-aaaaaataatttatggaatg-gca------ttgacatttttgcaaatctctttactatctggtttaatataagatagcgggattttctggtctgtttctgtatttaatttgttgtcatgtgttattctggttgaagtatatgaagaaaatccagcctcacacagat-acgtagttgg-aaaaaggag-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       116076 241 -   2311642 ag----ggg---tagatttattaatcatt---aaaa----aaac----ct-attacatattaacacaat--g-----------attttccaagac-aaaaaataatttatggaatg-gca------ttgacatttttgcaaatctctttactatctggtttaatataagatagcgagattttctggtctgtttctgtatttaatttgttgtcatgtgttattctggttgaagtatatgaagaaaatccagcctcacacagat-acgtagttgg-aaaaaggag-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       108157 241 -   1987038 ag----ggg---tagatttattaatcatt---aaaa----aaac----ct-attacatattaacacaat--g-----------attttccaagac-aaaaaataatttatggagtg-gca------ttgacatttttgcaaatctctttactatctggtttaatataagatagtgggattttctggtctgtttctgtatttaatttgttgtcatgtgttattctggttgaagtatatgaagaaaatccagcctcacacagat-acgtagttgg-aaaaaggag-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21189677 241 -  24206276 ag----ggg---tagatttattaatcatt---aaaa----aaac----ct-attacatattaacacaat--g-----------attttccaagac-aaaaaaaaatttatggagtg-gca------ttgacatttttgcatatctctttactatctggtttaatataagatagcaggattttctggtctgtttctgtatttaatttgttgtcatgtgttattctggttgaagtatatgaagaaaatccagcctcacacagat-acgtagttgg-aaaaaggag-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       131139 241 -   1397330 ag----ggg---tagatttattaatcatt---aaaa----aaac----ct-attacatattaacacaat--g-----------attttccaagac-aaaaaataatttatggagtg-gca------ttgacatttttgcaaatctctttactatctggtttaatataagatagtgggattttctggtctgtttctgtatttaatttgttgtcatgtgttattctggttgaagtatatgaagaaaatccagcctcacacagat-acgtagctgg-aaaaaggag-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       130199 242 -   1784207 ag----ggg---tagatttattaatcatt---aaaa----aaac----ct-attacatattaacacaat--g-----------attttccaagacaaaaaaaaaatttacggagtg-gca------ttgacatttttgcaaatctctttactatctggtttaatataagatagcgggattttctggtctgtttctgtattttatttgttgtcatgtgttattctggttgaagtatatgaagaaaatccagcctcacacagat-acgtagttgg-aaaaaggag-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22335552 246 + 158406734 aaaaagggg---cagatggattaatcattt--ttaa----aaac----ct-attacatattaatacaac--a-----------atttcccaagac-aaaaaaaaatttaaggagtg-gca------atgacatttttgcaaatctctttagtatctgattcaatataagatggtgggattttctggtctgtttctgtatttaatttcttgccatgtgttgttttggttgaagtatatgaagaaaatccagcctcacacaggt-atgtagttgg-aaaaaggaa-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50570912 246 +  54856640 aaaaagggg---cagatggattcatcattt--aaaa----aaac----ccgattacatattaatacaaa--a-----------atttcccaagac--aaaaaaaatttaaggagtg-gca------atgacatttttgcaaatctctttagtatctggtttaatataagacggtgggattttctggtctgtttctgtatttaatttcttgccatgtgttgttttggttgaagtatatgaagaaaatccagcctcacacagat-atgtagttgg-aaaaaggga-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       723568 242 -   2910086 aaaaa-ggg---cagatag----atcatttaaaaaa----aaaa----ct-attacatattaatacaac--a-----------atttcccaagac--aaaaaaaatttaaggagtt-gca------atgacatttttgcaaatctctttagtatctggtttaatataagacggtgggattttctgatctgtttctgtttctcatttcttgccatgtgttgtttcggttgaagtatatgaagaaaatacagtctcacacagat-atgtagttgg-aaaaaggaa-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40735351 237 +  42888418 ------ggg---cagatggattaatcattt-taaaa----aaac----ct-atcacatattaatac-----a-----------attccccaagat---taaaaaatttaaggagtg-gca------atgacatttttgcaaatctctttagtatctggtttaatataagacggtaggattttctggtctgtttctgtatttcatttctcgccatgtgttgttttggttgaagtatatgaagaaaatccagcctcacacagat-atgtagttggaaaaaaggaa-
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               37398420 241 -  91889043 ----------------ctgaaaaattatt---aaagttacaaat----cc-atttcatattaataaagttat-----------atttttggagac-aaaggaagatgaaaagagtgagcagtcttttttgtatttttgcaaatctctttagtattggatttattagaagatagctggcttttc----ctgtctctgtgtttaatttgttgccgtgtgttgtttcagttgaaatatatgaagaaaatttggcctcacacagat-gctgggttga-aaagaggag-
i canFam3.chr3              C 0 I 188
s dasNov3.JH570731            1992696 242 -   3943991 ag----aggaattaaatttattcat--tt---aaaa----tagcaacgct-gttaaatgctaacacatt--gtgaaaaattatgttttccaaaac-aaaag--aattagaggagtg-gta--tttgtttacatttttgcaaatctccctagtatctggctcagtagaaga--gctggattttcctatttgcttttgtatttaatc--------agtgttattttggt---------tgaagaaattccagcctcccatagataaaatagttgt-aaaagaggaa
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81444899 1844 + 145441459 I
e otoGar3.GL873530             724297 1806 -  36342412 I

a score=90185.000000
s hg38.chr15_KI270850v1_alt    427251 7 +    430880 tatttta
s panTro5.chr15              63579747 7 +  83230942 tatttta
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80536690 7 +  99763055 tatttta
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       136849 7 -   1709092 tatttta
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17298766 7 - 121039945 tatttta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60973092 7 + 169600520 tatttta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108499815 7 - 171882078 tatttta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       116317 7 -   2311642 tatttta
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       108398 7 -   1987038 tatttta
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21189918 7 -  24206276 tatttta
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       131380 7 -   1397330 tatttta
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       130441 7 -   1784207 tatttta
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22335798 7 + 158406734 tatttta
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50571158 7 +  54856640 tatttta
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       723810 7 -   2910086 tatttta
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40735588 7 +  42888418 tatttta
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               37398849 7 -  91889043 tatttaa
i canFam3.chr3              I 188 C 0
s dasNov3.JH570731            1992938 7 -   3943991 tttttta
i dasNov3.JH570731          C 0 I 4600
e mm10.chr7                  81444899 1844 + 145441459 I
e otoGar3.GL873530             724297 1806 -  36342412 I

a score=7174702.000000
s hg38.chr15_KI270850v1_alt    427258 688 +    430880 atatcattgtcagacaactg---tggcta-------ttaatactac--accaaaattcccaacaaatggtaa-----cttcttaaagattagttacaatatggaatctgaaaccata----t----gtact----cttcatatgctgttacattaaaacacatgggtcaatcttgcattttggatggatcttttactcctatc------------------tgttagtcatttg-acaaatattggc---ttgaattatgcaa-----------------------------------atataacaaacgttgacacactagttaatagtaaatagtaccaccaatctcacc--aggggacttc-aagtattggggcaagtgtcaagctcatgtggtggcagataaaggtcttccaaaattc----ttatttttttcttcagtgctcaaattgt-atcactggcaacaaataaagtgagctatttct-tatgaagtgactgacttacttggttgattttcaagaaaatgtctgccaaatacccaaagttga--ataaccatagtttgttagttgttcttctggtaaagaaaaaaaaggttttca------------aagg----aaaaaaagaggcttattcttgaaactcagt---------cacatttccttgagacaatcatcatacttggatatgaagcaaaagtactttatactgacttctcatttgtcacacagaatattaaaggcatatattcaagggctgagatgtaatgaaattaattttactgcttcctcaaggacattt
s panTro5.chr15              63579754 688 +  83230942 atatcattgtcagataactg---tggcta-------ttaatactac--accaaaattctcaacaaatggtaa-----cttcttaaagattagttacagtatggaatctgaaaccgta----t----gtact----cttcatatgctgttacattaaaatacatgggtcaatcttgcattttggatggatcttttactcctatc------------------tgttagtcatttg-acaaatattggc---ttgaattatgcaa-----------------------------------atataacaaatgttgacacactagttaatagtaaatagtaccaccaatctcacc--aggggacttc-aagtattggggcaagtgtcaagctcatgtggtggcagataaaggtcttccaaaattc----ttattttcttcttcagtgctcaaattgt-atcactggcaacaaataaagtgagctatttct-tatgaagtgactggcttacttggttgattttcaagaaaatgtctgccaaatacccaaagttga--ataaccatagtttgttagttgttcttctggtaaagaaaaaaaaggtgttca------------aacg----aaaaaaagaggcttattcttgaaactcagt---------cacatttccttgagacaatcatcatacttggatatgaagcaaaagtactttatactgacttctcatttgtcacacagaatattaaaggcatatattcaacggctgagatgtaatgaaattaattttactgcttcctcaaggacattt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80536697 688 +  99763055 atatcattgtcagacaactg---tggcta-------ttaatactac--accaaaattctcaacaaatggtaa-----cttcttaaagattagttacagtatggaatctgaaaccgta----t----gtact----cttcatatgctgttacattaaaatacatgggtcaatcttgcattttggatggatcttttactcctatc------------------tgttagtcatttg-acaaatattggc---ttgaattatgcaa-----------------------------------atataacaaacgttgacacactagttaatagtaaatagtaccaccaatctcacc--aggggacttc-aagtattggggcaagtgtcaagctcatgtggtggcagataaaggtcttccaaaattc----ttattttcttcttcagtgctcaaattgt-atcactggcaacaaataaagtgagctatttct-tatgaagtgactggcttacttggttgattttcaagaaaatgtctgccaaatacccaaagttga--ataaccatagtttgttagttgttcttctggtaaagaaaaaaaaggtgttca------------aacg----aaaaaaagaggcttattcttgaaactcagt---------cacatttccttgagacaatcatcatacttggatatgaagcaaaagtactttatactgacttctcatttgtcacacagaatattaaaggcatatattcaacggctgagatgtaatgaaattaattttactgcttcctcaaggacattt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       136856 696 -   1709092 atatcattttcagacaactg---tggcta-------ttaatactac--accaaaattctcaacaaatggtaa-----cttcttaaagattagttacaatatggaatctgaaaccata----t----gtact----cttcatatgctgttacattaaaatacatgggtcaatcttgcattttggatggatgtttcactcctatc------------------tgttagtcatttg-acaaatattggc---ttgaattatgcaa-----------------------------------atataacaaacgttgacacactagttaatagtaaatagtaccaccaatctcacc--aggggacttt-aagtattggggcaagtgtcaagctcatgtggtggcagataaaggtcttccaaaattc----ttatttttttcttcagtgctcaaattgt-atcactggcaacaaatatagtgagctatttct-tatgaagtgactggcttacttggttgattttcaagaaaatgtctgccaaatacccaaagttga--ataaccatagtttgttagttgttcttctggtaaagaaaaaaaaggtgttca------------aagg----aaaaaaagaggcttattcttgaaactcagt-cacataaacacatttccttgagacaaccatcatacttggatataaagcaaaagtactttataccgacttctcatttgtcacacagaatattaaaggcatatattcaagggctgagatgtaatgaaattaattttactgcttcctcaaggacattt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17298773 700 - 121039945 atatcattttcagacaactg---tggcta-------ttaatactac--accaaaattctcaacaaatggtaa-----tttcttaaagattagttacaatatggaatctgaaaccata----t----gtatt----cctcatatgctgttacattaaaacacatgagtcaatcttgcattttggatggatcttttactcctatctgatt-------------tgttagtcatttg-acaaatattggc---ttgaattatgcaa-----------------------------------atataacaaacgttgacacactagttaatagtaaatagtaccaccaatctcacc--aggggacttc-aagtattggggcaagcgtcaagctcatgtggcggccaataaaggtcttccagaattc----ttatttttttcttcagtgctcaaattgt-atcactggcaacaaatatagtaagttatctct-tatgaagtgactggcttacttggttcatttgcaagaaaatgtctgccaaatacccaaagttga--ataaccatagtttgttagttgttcttctggtaaag-aaaaaaaggtgttca------------aagg----aaaaaaagaggcttattcttgaaactcagt-cacataaacacatttccttgagacaatcatcatacttggatatgaagcaaaagtactttatactgacttctcatttgtcacacagaatattaaaggcatatattcaaggcctgagatgtaatgaagttaattttactgcttcctcaaggatattt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60973099 714 + 169600520 ataccattttcagacaacta---tggcta-------ttaatactac--accaaaattctcaacaaatggtaa-----cttcttaaagattagttacaatatggaatctgaaaccata----t----gtact----cttcatatgctgttacattaaaacacatgggtcaatcttgcattttggatggatcttttacgcctatctgattttct---atcatatgttagtcatttg-acaaatact-gc---ctgaattatgcaa-----------------------------------atataacagatgttgacatactagttaatagtaaatagtaccaccaatctcatc--aggggtcttt-aagtattggggcaagtgtcaagctcatgtggtggcagataaaggtcttccaaaattctttttttttttttctttcagtgctcaaattgc-atcagtggcaacaaatatagtgagttatttct-tatgaagtgactggattactctgttaattttcaagaaaatgtctgtcaaatacccaaagttca--ataaccacagtttgttagttgttgttctggtaaag-ataaaaaggtgtttc------------aagga---aaaaaaagaggcttattcttgaaactcagt-cacataaacacttttcctcgagataatcaccatacttggatatgaagtaaaagtactttatactgacttctcatttgtcacacagaatattaaaggcatatattcaagggctgagatttaatgaaattaattttactgcttcctcaaggacattt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108499822 713 - 171882078 ataccattttcagacaacta---tggcta-------ttaatgctac--accaaaattctcaacaaatggtaa-----cttcttaaagattagttacaatatggaatctgaaaccata----t----gtact----cttcatatgctgttacattaaaacacatgggtcaatcttgcattttggatggatcttttacgcctatctgattttct---atcatatgttagtcatttg-acaaatact-gc---ctgaattatgcaa-----------------------------------atataacagatgttgacatactagttaatagtaaatagtaccaccaatctcatc--aggggtcttt-aagtattggggcaagtgtcaagctcatgtggtggcagataaaggtcttccaaaattc-ttttttttttttctttcagtgctcaaattgc-atcagtggcaacaaatatagtgagttatttct-tatgaagtgactggattactctgttaattttcaagaaaatgtctgccaaatacccaaagttca--ataaccacagtttgttagttgttgttctggtaaag-ataaaaaggtgtttc------------aagga---aaaaaaagaggcttattcttgaaactcagt-cacataaacacttttcctcgagataatcaccatacttggatatgaagtaaaagtactttatactgacttctcatttgtcacacagaatattaaaggcatatattcaagggctgagatttaatgaaattaattttactgcttcctcaaggacattt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       116324 712 -   2311642 ataccattttcagacaacta---tggcta-------ttaatactac--accaaaattctcaacaaatggtaa-----cttcttaaagattagttacaatatggaatctgaaaccata----t----gtact----cttcatatgctgttacattaaaacacatgggtcaatcttgcattttggatggatcttttacgcctatctgattttct---atcatatgttagtcatttg-acaaatact-gc---ctgaattatgcaa-----------------------------------atataacagatgttgacatactagttaatagtaaatagtaccaccaatctcatc--aggggtcttt-aagtattggggcaagtgtcaagctcatgtggtggcagataaaggtcttccaaaattc--tttttttttttctttcagtgctcaaattgc-atcagtggcaacaaatatagtgagttatttct-tatgaagtgactggattactctgttaattttcaagaaaatgtctgccaaatacccaaagttca--ataaccacagtttgttagttgttgttctggtaaag-ataaaaaggtgtttc------------aagga---aaaaaaagaggcttattcttgaaactcagt-cacataaacacttttcctcgagataatcaccatacttggatatgaagtaaaagtactttatactgacttctcatttgtcacacagaatattaaaggcatatattcaagggctgagatttaatgaaattaattttactgcttcctcaaggacattt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       108405 711 -   1987038 ataccattttcagacaactg---tggcta-------ttaatactac--accaaaattctcaacaaatggtaa-----cttcttaaagattagttgcaatatggaatctgaaaccata----t----gtact----cttcatatgctgttacattaaaacacatgggtcaatcttgcattttggatggatcttttacgcctatctgattttct---atcatatgttaggcatttg-acaaatact-gc---ctgaattatgcaa-----------------------------------atataacagatgttgacatactagttaatagtaaatagtaccaccaatctcatc--aggggtcttt-aagtattggggcaagtgtcaagctcatgtggtggcagataaaggtcttccaaaattc--tttttttttttctttcagtgctcaaattgc-atcagtggcaacaaatatagtgagttatttct-tatgaagtgactggattactttgttcattttcaagaaaatgtctgccaaatacccaaagttca--ataaccatagtttgttagttgttcttctggtaaag-ataaaaaggtgtttc------------aagg----aaaaaaagaggcttattcttgaaactcagt-cacataaacacttttcctccagataatcaccatacttggatatgaagtaaaagtactttatactgacttctcatttgtcacacagaatattaaaggcatatattcaagggctgagatttaatgaaattaattttactgcttcctcaaggacattt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21189925 712 -  24206276 ataccattttcagacaactg---tggcta-------ttaatactac--accaaaattctcaacaaatggtaa-----cttcttaaagattagttacaatatggaatctgaaaccata----t----gtact----cttcatatgctgttacattaaaacacatgggtcaatcttgcattttggat-gatcttttacgcctatctgattttct---atcatatgttagtcattta-acaaatact-gc---cagaattatgcaa-----------------------------------atataacagatgttgacatactagtgaatagtaaatagtaccaccaatctcatc--aggggtcttt-aagtattggggcaagtgtcaagctcatgtggtggcagataaaggtcttccaaaattctttttttttttttctttcagtgctcaaattgc-atcagtggcaacaaatatagtgagttatttct-tatgaagtgactggattactttgttcattttcaagaaaatgtctgccaaatacccaaagttca--ataaccatagtttgttagttgttcttctggtaaag-ataaaaaggtgttcc------------aagg----aaaaaaagaggcttattcttgaaactcagt-cacataaacacttttccttgagataatcagcatacttggatatgaagtaaaagtactttatactgacttctcatttgtcacacagaatattaaaggcatatattcaagggctgagatttaatgaaattaattttactgcttcctcaaggacattt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       131387 711 -   1397330 ataccattttcagacaactg---tggcta-------ttaatactac--accaaaattctcaacaaatggtaa-----cttcttaaagattagttacaatatggaatctgaaaccata----t----gtact----cttcatatgctgttacattaaaacacatgggtcaatcttgcattttggatggatcttttacgcctatctgattttct---atcatatgttagtcatttg-acaaatact-gc---ctgaattatgcaa-----------------------------------atataacagatgttgacatactagttaatagtaaatagtaccaccaatctcatc--aggggtcttt-aagtattggggcaagtgtcaagctcatgtggtggcagataaaggtcttccaaaattc--tttttttttttctttcagtgctcaaattgc-atcagtggcaacaaatatagtgagttatttct-tatgaagtgactggattactttgttcattttcaagaaaatgtctgccaaatacccaaagttca--ataaccatagtttgttagttgttcttctggtaaag-ataaaaaggtgtttc------------aagg----aaaaaaagaggcttattcttgaaactcagt-cacataaacacttttcctccagataatcaccatacttggatatgaagtaaaagtactttatactgacttctcatttgtcacacagaatattaaaggcatatattcaagggctgagatttaatgaaattaattttactgcttcctcaaggacattt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       130448 705 -   1784207 atacca-tttcagacaactg---tggcta-------ttaatactat--acc-aaattctcaacaaatggtaa-----cttcttaaagattagttacaatacggaatctgaaaccata----t----gtact----cttcatatgctgttacattaaaacacatgggtcaatcttgcattttggatggatcttttactcctatctgattttct---atcatatgttagtcatttg-gcaaatact-gc---ctgaattatgcaa-----------------------------------atataacagatgttgacacactagttaatagtaaatagtaccaccaatctcatc--aggggtcttt-aagtattggggcaagtgtcaagctcatgtggtggcagataaaggtcttccaaaattc--tttttttttttccttcagtgctcaaattgt-atcagtggcaacaaatatagtgaggtattt-t-tatgaagtgactggattactttgttcattttcaaccaaatgtgtgccaaatacccaaagttca--ataaccataatttgttagttgttcttctggtaaag-ataaaaaggtgttcc------------aagg----aaaaaaagaggtttattcttgaaactctgt-cacataaacacttttccttgagataatcaccatacttggat---aagtaaaagtactttatactgacttctcatttgtcacacagaatattaaaggcacatattcaagggctgagatttaatgaaattaattttactgcttcctcaaggacatct
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22335805 681 + 158406734 atatcattttcagacaactc---tggttattc---tttaatactac--accaaaattctcaacaaatggtaa-----cttcttaaagattagttacaacatgaaatctggaaccata----t----gtact----cttcatatgctgttacattaaaacacataggtcaagcttatagtttggatggatcttttacttatatctgtttttct---atcatatgttagtcatttg-acaaatactgtctcactgagttatgcaa-----------------------------------atataacaaatgttgacacactagtt-------aacagtaccagcaatctcatc--aggagttttt-aagtattggggcaactgttaagctcacacggtgacagataaaggtcttccaaatttt---------------------------------aacattg---gcaaatatagtgagttatttct-cattaagtgactggcttactttgttcattttcaataaaatgtctgccaaatacgcaaacctga--ataaccatagtttgtcagttgttcctctagtaaag-aagaaaaggtgtttc------------cagggggaagaaaaagaggcttattcttgaaactcagt-catataaacac-tttccttgagataatcatcgtacttggatataaagcaaaagtactttatgctgacttctcatttgtcacacagaatattaaa-gcatatattcaaggaccaaaatttaaggaaattaattttactgcttcctcaaggacattt
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50571165 679 +  54856640 atatcattctcagacaactg---tggttattc---tttaatactacttaccaaaattctcaacaaatggtaa-----cttaataaagattagttacaacatgaaatccggaaccata----t----gtact----cttcatatgctgttacattaaaacaaataggtcaagtttgtattttggatggatcttttactcctatctgcttttgt---atcatatgttagtcatttg-acaaatactggctcaccgagttatgcaa-----------------------------------atatgacaaatgttgacacactagtt-------aatagtaccagcaatttcatc--aggagtcttt-aagtattggggcaactgttaagctcacatggtagcagataaaggtcttccaaatttt---------------------------------atcattg---acaaatacagtgcgctatttct-catgaagtgactggcttactttgttcattttcaataaaatgtctgccaaatacccaaagttga--ataaccatagtttgtcagttgctcttctagtaaag-aaaaaaaggtgttcc------------gaggg---aaagaaagaggcttattcttgaaactcagt-catataaacac-tttccttcagacaatcatcatac-cggatataaagcaaaagtactttatgctgacttctcatttttcacacaaaatattaca-gcacatattcaaggaccaagatttaattaaattaattttaccgcttcctcaaggacattt
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       723817 675 -   2910086 atatcattttcagacaactg---tggttattc---tttaatactac--accaaaattctcaacaaatggtaa-----cttcttaaagattagttaaaacatgaaatccggaaccata----t----gtact----cttcatatgctgttacattaaaacacacaggtcaagcttgtattttggatggatcttttactcatatctgtttttgt---atcatatgttagtcatttg-acaaatactggctcactgagttatgcaa-----------------------------------atatgacaaatgttgacacaatagtt-------aatagtaccagcaatctcatc--aggagtcttt-aagtattggggcaactgttaagctcacgaggtgggagataaaggtcttccaaatttt---------------------------------atcattg---acaaatatagtgagttatttct-catgaagtgactggcttactttgttcattttcaataaaatgtctgccaaatacccaaagttga--ataaccgtagtgtgtcagttg---ttctagtaaag-aaaaaaaggttttcc------------aagga---aaaaaaagaggcttattcttgaaactcagt-catataaacac-tttccttgagataatcatcgtacttggatataaagcaaaggtactttatgctgacttctcatttgtcacacagaatattaaa-gcatatattcaaggaccaagatttaatgaaattaattttactgcttcctcaaggacattt
i cebCap1.NW_016107610v1    C 0 I 293
s aotNan1.NW_018505940v1     40735595 678 +  42888418 atatcattttcagacaaccg---tggttattc---tttagtactac--accaaaattctcaacaaatggtaa-----cttcttaaagattagtaacaacatgaaatctggaaccata----t----gtact----cttcatatgttgttacattaaaacacataggtcaagcttgtattttggatggatcttttactcatacctgtttttct---atcatatgttagtcatttg-acaaatactggctcactgagttatgcaa-----------------------------------atataacaaatgttgacacactagtt-------aatagtaccagcaatctcatc--aggagtcttt-aagtattggggcaactgttaagctcacgtggtggcagataaaggtcttccaaatttt---------------------------------atcattg---acaaatatagcgagttatttct-cattaagtgactggcttactttgttcattttcaagaaaatgtctgcccaatacccaaagttga--ataaccatagtttgtcagttgttcttctagtaaag-aa-aaaaggttctct------------gagga---aaaaaaagaggcttattcttgaaactcagt-catataaacac-tttccttgagataatcatcgtacttggatataaagcaaaagtactttatgctgacttctcatttgtcacacagaatattaaaggcatatattcaaggaccaagatttaatgaaattaattttactgcttcctcaaggacattc
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               37398856 734 -  91889043 ataaccttttcatttaattg---tggctattcctttttgatactac--actaaaa--ctcaacaagtattaa-----cttcttaaaggtcagttgcaacatggattccaaagcctta----taggagtact----ct---tactctgttagattaaaacacatatatctctctcatactttggatagatcattcacccatgcctgattttgt---aaca--ccgtaatcatttg-ataaatactggttcattg--ttatgcaatattcatagtaaatgtataatgtctgcacatacacatatatacactgctgacacactagtt-------aattacaccatcagtctcatcagaggagtctta-aaatattgaggaaa----------------gtggccgatgagggtttcccagagttc---tgttttttttccttcaaatcttaaattttaactgttggcaacaaatactgaccattatttttatttgaagtgtttgacttgctttg----ttttcaagagaatgtttgccaagtacccaaagttggatataactatagtatatcagttgtggtt----tcaag-tgaaaaagctatttctttaaaaaaacaaaca----aaaaaaaactagttcttcctgaaactcagg-cacataaacactttcccttgagacgactactaaacttcaatatgcagcaagtgggctttatgcttacttcccatttgtctcacagaatactaaaggcttatactcaagggtcaggatttaata----catttttactgctttctcaaggacatca
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1997545 702 -   3943991 ataaccttttcagataattgttttggctgttattctttgatactag--accacaa--ctcaacaagtggtactttgttttcttaaaatttagttataatgtataatttgagatgatacaggt----gtgttaaaattttaattcatattacattaaaatgtattggtatatactgcactttggatggatcttttatccatgcttgattttgtaacatcacatattagtcatttgaacaaatacttgctcactgagttttgtga-----------------------------------atattgcagatgttgacacatttgtt-------aatagaaccagcagtctcatc--agaagtctttgaagtactaggaaagctgtcaagctc--gtggcaatggataaag--tttctaaaattc-----taattttcagttcaaagcacaaatttt-atcattggcgataaatattgtcatttttttcc-t-tgaagtggttgccttacattgttcattctcaggaaaatatctgccaaatatcc--agttga--ataaccatagtttgtcaattctt-------tcaag-caaaaatggagtttc------------atgga---aaaagtggactattctgcttgcatcttaatccatgtacagggttttccttgcgacagttc---tattttgatatgcaacagaaatgttctatgcttacctcc-----------cagaatattaaaggcatgtactcaagggttgagatttaataaaat---tttcactgcttcttcaaggacatgc
i dasNov3.JH570731          I 4600 C 0
e mm10.chr7                  81444899 1844 + 145441459 I
e otoGar3.GL873530             724297 1806 -  36342412 I

a score=46513.000000
s hg38.chr15_KI270850v1_alt    427946 5 +    430880 gtaag
s panTro5.chr15              63580442 5 +  83230942 gtaag
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80537385 5 +  99763055 gtaag
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       137552 5 -   1709092 gtaag
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17299473 5 - 121039945 gtaag
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60973813 5 + 169600520 gcaag
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108500535 5 - 171882078 gcaag
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       117036 5 -   2311642 gcaag
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       109116 5 -   1987038 gcaag
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21190637 5 -  24206276 gcaag
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       132098 5 -   1397330 gtaag
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       131153 5 -   1784207 gcaag
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22336486 5 + 158406734 ataag
i calJac3.chr6              C 0 I 306
s saiBol1.JH378108           50571844 5 +  54856640 ataag
i saiBol1.JH378108          C 0 I 318
s aotNan1.NW_018505940v1     40736273 5 +  42888418 ataag
i aotNan1.NW_018505940v1    C 0 I 308
s canFam3.chr3               37399590 5 -  91889043 ataag
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1998247 5 -   3943991 ctaag
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81444899 1844 + 145441459 I
e cebCap1.NW_016107610v1       724492 293 -   2910086 I
e otoGar3.GL873530             724297 1806 -  36342412 I

a score=4948679.000000
s hg38.chr15_KI270850v1_alt    427951 480 +    430880 tgacactggc--ttttctgggaatgtgtaccatgaagaatacaatgactgc-tactacagtttaatggcattgccctgattcctgctaagtaagtg-ccagct-gttttactcacccccattgcttttgcactatcggtacaaatgtcaacacagtggggtgggggagcagaaatcaac-cacgtcttagaattataaaaatacttctgactttatag-cctctt---aaagg---gttttggtgac--cactaggcaggcatg-gacctagcttggagaactgctgCCAcagagtaaaggccaagttccttatcaatagcatataaaacccttcatggtccgCCTTCAGCTTAGTGGCCAAGTTAAGTCCCTCCTGGTCTATTCCT---ACTTTATTCTGTT-------GTG---TGTTCC-CTCTCAATAAAAGGACAATAGTTAtaagtgtgtat--cttgatcaacattcac---------ttatctgtacataccggagcaaccaccacacacagc
s panTro5.chr15              63580447 480 +  83230942 tgacactggc--ttttctgggaatgtgtaccatgaagaatacaatgactgc-tactacagtttaatggcattgccctgattcctgctaagtaagtg-ccagcc-gttttactcacccccattgcttttgcactatcggtacaaatgtcaacacagtggggtgggggagcagaaatcaac-catgtcttagaattataaaaatacttctgactttatag-cctctt---aaagg---gttttggtgac--cactaggcaggcatg-gacctaacttggagaactgctgCCAcagagtaaaggccaagttccttatcaatagcatataaaacccttcatggtctgCCTTCAGCTTAGTGGCCAAGTTAAGTCCCTCCTGGTCTATTCCT---ACTTTATTCTGTT-------GTG---TGTTCC-CTCTCAATAAAAGGACAATAGTTAtaagtgtgtat--cttgatgaacattcac---------ttatctgtacataccggagcaaccaccacacacagc
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80537390 480 +  99763055 tgacactggc--ttttctgggaatgtgtaccatgaagaatacaatgactgc-tactacagtttaatggcattgccctgattcctgctaagtaagtg-ccagcc-gttttactcacccccattgcttttgcactatcggtacaaatgtcaacacagtggggtgggggagcagaaatcaac-catgtcttagaattataaaaatacttctgactttatag-cctctt---aaagg---gttttggtgac--cactaggcaggcatg-gacctagcttggagaactgctgCCAcagagtaaaggccaagttccttatcaatagcatataaaacccttcatggtccgCCTTCAGCTTAGTGGCCAAGTTAAGTCCCTCCTGGTCTATTCCT---ACTTTATTCTGTT-------GTG---TGTTCC-CTCTCAATAAAAGGACAATAGTTAtaagtgtgtat--cttgatcaacattcac---------ttatctgtacataccggagcaaccaccacacacagc
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       137557 480 -   1709092 tgacactggc--ttttctgggaatgtgtaccatgaagaatacaatgactgc-tactacagtttaatggcattgccctgattcctgctaagtaagtg-ccagcc-gttttacccacccccattgcttttgcactatcggtacaaatgtcaacacagtggggtgggggagcagaaatcaac-catgtcttagaattataaaaatacttctgactttatag-cctctt---aaagg---gttttggtgac--cactaggcaggcatg-gacctagcttggagaactgctgCCAcagagtaaaggccaagttccttatcaatagcatataaaacccttcatggtccgCCTTCAGCTTAGTGGCCAAATTAAGTCCCTCCTGGTCTATTCCT---ACTTTATTCTGTT-------GTG---TGTTCC-CTCTCAATAAAAGGACAATAGTTAtaagtgtgtat--cttgatcaagattcac---------ttatctgtatataccggagcaaccaccacacacagc
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17299478 478 - 121039945 tgacactggc--ttttctgggaatgtgtaccatgaagaatacaatgactgc-cactacagtttaatggcactgccctgattccccctaagtaagtg-ccagcc-attttacccacccccattgcttttgcactatcggtacaaatgtcaacacagtggggtgggggagcagaaatcaac-catgtcttagaattataaaaatacttctgactttatgg-cctctt---aaagg---gttttggtgaccacactaggcaggtaca-gacctagcttggagaactgctgCCAcagagtaaaggccaagttccttatcaacagcatataaaacccttcatggtctgCCTTCAGCTTAGTGGCCAAGTTAGATCCCTCCTAGTCTATTCCC---ACTTTATTCTGTT-------GTG---TGTTCT-CTCTCAATAAAAGGGCAATAGTT----gtgtgtat--cttgatcaagattcac---------gtatctgtatatactggagcaaccaccacacacagc
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60973818 476 + 169600520 tgacaccggc--ttttctgggaatgtgtagcatgaaaaatacaatggctgc-taccacagtttaatgacattgccctgattcctgc----tatgtg-ccagct-gttttacccacccccattgcttttgcactatcggtacaaatgtcaacacagtggggtgggggaggataaatcaac-catgtcttagaattataaaaatacttctgactttgtgg-cctctt---aaagg---gttttggtgac--cactaggcaggcaca-gacctagcttggagaactgctgCCAcagagtaaaggccaagttccttatcaatagcatataaaacccttcatggtctggCTTCAGCTTAGTGGCCAAGTTAGAACCCTCCTAGTCTATTCCT---ACTTTATTCTGTT-------GTG---TGTTCT-CTCTCAATAaaagggcactagttatgaatatgtat--cttgatcaagattcac---------ttatctgtatataccggagcaaccaccacacatagc
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108500540 476 - 171882078 tgacaccggc--ttttctgggaatgtgtagcatgaaaaatacaatggctgc-taccacagtttaatgacattgccctgattcctgc----tatgtg-ccagct-gttttacccacccccattgcttttgcactatcggtacaaatgtcaacacagtggggtgggggaggataaatcaac-catgtcttagaattataaaaatacttctgactttgtgg-cctctt---aaagg---gttttggtgac--cactaggcaggcaca-gacctagcttggagaactgctgCCAcagagtaaaggccaagttccttatcaatagcatataaaacccttcatggtctggCTTCAGCTTAGTGGCCAAGTTAGAACCCTCCTAGTCTATTCCT---ACTTTATTCTGTT-------GTG---TGTTCT-CTCTCAATAaaagggcactagttatgaatatgtat--cttgatcaagattcac---------ttatctgtatataccggagcaaccaccacacatagc
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       117041 476 -   2311642 tgacaccggc--ttttctgggaatgtgtagcatgaaaaatacaatggctgc-taccacagtttaatgacattgccctgattcctgc----tatgtg-ccagct-gttttacccacccccattgcttttgcactatcggtacaaatgtcaacacagtggggtgggggaggataaatcaac-catgtcttagaattataaaaatacttctgactttgtgg-cctctt---aaagg---gttttggtgac--cactaggcaggcaca-gacctagcttggagaactgctgCCAcagagtaaaggccaagttccttatcaataacatataaaacccttcatggtctggCTTCAGCTTAGTGGCCAAGTTAGAACCCTCCTAGTCTATTCCT---ACTTTATTCTGTT-------GTG---TGTTCT-CTCTCAATAaaagagcactagttatgaatatgtat--cttgatcaagattcac---------ttatctgtatataccggagcaaccaccacacatagc
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       109121 479 -   1987038 tgacaccggc--ttttctgggaatgtgtagcatgaaaaatacaatggctgc-taccacagtttaatgacattgccctgattcctgc----tacgtg-ccagct-gttttactcacccccattgcttttgcactatcggtacaaatgtcaacacagtggggtgggggaggataaatcaac-catgtcttagaattatacaaatacttctgactttgtgg-cctctt---aaaggaaagttttggtgac--cactaggcaggcaca-gacctagcttggagaactgctgCCAcagagtaaaggccaagttccttatcaatagcatataaaacccttcatggtctggCTTCAGCTTAGTGGCCAAGTTAGAACCCTCCTAGTCTATTCCT---ACTTTATTCTGTT-------GTG---TGTTCT-CTCTCAATAaaagggcactagttatgaatatgtat--cttgatcaagattcac---------ttatctgtatataccggagcaaccaccacacatagc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21190642 476 -  24206276 tgacaccggc--ttttctgggaatgtgtagcacgaaaaatacaatggctgc-taccacagtttaatgacattgccctgattcctgc----taagtg-ccaact-gttttacccacccccattgcttttgcactatcggtacaaatgtcaacacagtggggtgggggaggataaatcaac-catgtcttagaattataaaaatacttctgactttgtgg-cctctt---aaagg---gttttggtgac--cactaggcaggcaca-gacctaacttggagaactgctgCCAcagagtaaaggccaagttccttatcaatagcatataaaacccttcacggtctggCTTCAGCTTAGTGGCCAAGTTAGAACCCTCCTAGTCTATTCCT---ACTTTATTCTGTT-------GTG---TGTTCT-CTCTCAATAaaagggcactagttatgaatatgtat--cttgatcaggattcac---------ttatctgtatataccggagcaaccaccacacatagc
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       132103 476 -   1397330 tgacaccggc--ttttctgggaatgtgtagcatgaaaaatacaatggctgc-taccacagtttaatgacattgccctgattcctgc----tacgtg-ccagct-gttttactcacccccattgcttttgcactatcggtacaaatgtcaacacagtggggtgggggaggataaatcaac-catgtcttagaattataaaaatacttctgactttgtgg-cctctt---aaagg---gttttggtgag--cactaggcaggcaca-gacctagcttggagaactgctgCCAcagagtaaaggccaagttccttatcaatagcatataaaacccttcatggtctgACTTCAGCTTAGTGGCCAAGTTAGAACCCTCCTAGTCTATTCCT---ACTTTATTCTGTT-------GTG---TGTTCT-CTCTCAATAaaagggcactagttatgaatatgtat--cttgatcaagattcac---------ttatctgtatataccggagcaaccaccacacatagc
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       131158 474 -   1784207 tgacaccggc--ttttctgggaatgtgtagcatgaaaaatacaacggttgc-taccacagtttaatgacattgccctgattcctgc----taagtg-ccagct-gttttacctacccccattgcttttgcactatcggtacaaatgtcaacacagtggggtgggggaagagaaatcaac-catgtcttagaattataaaaatacttctgcctttgtgg-cctctt---aaagg---gttttggtgac--tactaggcaggcaca-gacctagctgggagaactgctTCctcagagtaaaggccacgttccttatcaatagcatataaaacccttcatggtttggCTTCAGCTTAGTGGCCAAGTTAGAACCCTCCTAGTCTATCCCT---ACTTTATTCTGT---------TG---TGTTCT-CTCTCAATAaaagggcactagttatgagtatgtat--cttgattaagattcac---------ttatctgtatacaccggagcaaccaccacacataac
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22336797 473 + 158406734 tgacactggc--ttttctaggaatgtgtagcatgaagaatacagtgactgc-cactacagtttaatggcattaccctgattcctag----taagtg-ctagccagttttactgacctccaatgcttttgcactatcagtgcaaatgtcaacacagtggggtgggggaggagaaatcaactcatgtactagaattacagaaatacttctgactttgtaggcctctt---aaagg---gcttttgtgac--cactaggcatgcagaccacctagcttggagaagtgctgTCAcagagtaaaggccaagttccttatcaatagcacataaaaccctttatggtctggCTTCATCTTAGTGGCCAAGTTAGAGCCCTCCTAGTCTAATCCT---ACTT-----TATT-------ATG---TGTTCT-CTCTCAATtaaaggacactagttacaaatgtgtat--cttgatcaagtttcac---------ttatctgtatatacaggagcaaccac--cacacagg
i calJac3.chr6              I 306 C 0
s saiBol1.JH378108           50572167 475 +  54856640 tgacactggc--ttttctaggaatgtgtagcatgaagaatacaatgactgc-tactacagtttaatggcattaccctgattcctgg----taagtg-ctagccagttttacccatctctaccacttttgcactatcagtgcaaatgtcaacacagtggggtaggggaagagaaatcaactcatgtactggaatcacagaaatatttctgactttgtggacctctt---aaagg---gtttttgtgac--cactaggcatgcaga-gacctagcttgcagaagtgctgTCAcagagtaaaggccaagttccttatcaaaagcacataaaacccttcatggtctTGCTTCATCTTAGTGACCAAGTTAGAGCCCTCCTAGTCTAATCCT---ACTT-----TATT-------GTG---TGTTCTCCTCTCAATtaaaagacactagtttcaaatgtgtat--cttgatcaagtttcac---------ttatctgtatatacaggagcaaccaccacacacagg
i saiBol1.JH378108          I 318 C 0
s cebCap1.NW_016107610v1       724785 482 -   2910086 tgacactggcttttttctaggaatgtgtagcatgaagaatacaatgattgc-tactacagtttaatggcattaccctgattcctgt----taagtg-ctagccagttttactcacctccaccgcttttgcactatcagtgcaaatgtcaacacagtggggtgggggtggagaaatcaactcatgtactaaaattacagaaatacttctgactttgtgggcctcgt---aaagg---gtttttgtgac--cactaggcatgcaga-gacctaagttggagaaatgctgTCAcagagtaaaggccaagttccttaccaattgcacataaaacccttcatggtctggCTTCATCTTAGTGGCCAAGTTAGAGCCCTCCTAGTCTAATCCT---ACTTTACTCTATT-------GTG---TGTTCTCCTCTCAATtaaaggacactagttacaaatgtgtat--cttgatcaagttttgc---------ttatctgtatatacagaagcaaccaccacacacggg
i cebCap1.NW_016107610v1    I 293 C 0
s aotNan1.NW_018505940v1     40736586 479 +  42888418 tgacactggc--ttttctaggaatgtgtagcatgaagaatacaatgactgc-tactacagtttaatggcattaccctgattcctgg----taagtg-ccagccagttttacccacttccactgcttttgcactattagtgcaaatgtcaacacagtggggtgggggaggagaaatcaactcatgtactagaattacagaaatacttctgactttgtgggcctctt---aaagg---gtttttgtgat--cactaggcatgcaga-gacctagcttggaaaagtgctgTCAcagagtaaaggccaagttccttatcaatagcacataaaacccttcatggtctCGCTTCATCTCAGTGGCCAAGTTAGAGCCCTCCTAGTCTAATCCT---ACTTTACTCTATT-------GTG---TGTTCT-CTCTCAATtaaaggacactagttacaaacgtgtat--cttgatcaagtttcac---------ttacctgtatatacaggagcaaccaccacacacagg
i aotNan1.NW_018505940v1    I 308 C 0
s canFam3.chr3               37399595 452 -  91889043 -aaaatctgt----ctctgggattgcagagcatgaagaatacagtaactgcttactatagtttactggcattgcctcgattcccgt----taagg---tggta-gttttacccacacttaggatttttgtaccatcattacaaatgtcagcatagtgaa-----------------aaa-aaaatcttagaattgtgaaagtagttttggtttagggg-gcctct---aaaag---gtcgtggggac--ctccagg--ggccaa-gacctcacttggagaactacCACCAcacaggaaaagtcaaggcccttagtggtagcatacaaagcccgttatggtctg------------------AGTTTAATTTCTATTGGTCTCCTCCTTGAACTTTTTTAAAATTGAgagagag---aacata-cacatagtaaaaag-cactaattgtgagtatata---cataataagtttttatatatttatattatttttacacacttaagtaactaccatacagata
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1998252 450 -   3943991 taaaactgac-tttttccagggatacatagcctgaggatcaaaaagactac-aaatgcaggttaatggcatggccttgattcctgt---gaaggtgcccagca-gttttacctacc-ctactgcttttgtaccatcagtgcaaacgccaacatagtggg--------gaaaaaagcaggtaatgtcttaggattatgaaaatagttttgaccttgtgg-acccctgaaaaagg---gtcttgggtac--cac-aggggtccaca-gacc--actttgagaattgctACTGCAGGGTAAAGGCCATGCTTCTTA-------------------------GTCTGGCTTTATCTTAGAGGCTGAGTTTGGTACCTACTAGTTTACTCCTTGAACTttttttaatg-------gagggatgacat-ccatccatcaaggacttttaattgtaagtatatatagaatggtaaatttttat---------gtatt--tacttacctccgtaaccaccacatatc--
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81444899 1844 + 145441459 I
e otoGar3.GL873530             724297 1806 -  36342412 I

a score=5088681.000000
s hg38.chr15_KI270850v1_alt    428431 495 +    430880 aagacacagaacatttccaacactctataaggttcccctgtgccctttcccacactatcccccaaa------------gagtttactattcaggcttctgttgttaccagttagttttgcccatt-tttgaacctcttataaatgcaatcatgtgg---gtattcttttgggtctggctttttttttttccccacttaacttagtatctgacatgtctacacattaaagtatagaacagtggtttttatcactgtg--------ctacatattaatagatgtggatatat------gtatttatccatattcctgCTCAAGGGTGTACAGAAAAGATTTAAAGTAAC-----------AGGTCTGACTGGtgtctt----ttagctacca-tctgggaacct-aaattttgagttcccaccattcccagaactg-----agtgacttactataccc-------------------------aaaggaacaaac-----------------------------------aatatggtttatgctgaacatcggctttcctcctggagtc-tgaaattt-----tggtacatttcaggcagaggctacctattca
s panTro5.chr15              63580927 494 +  83230942 aagacacagaacatttccaacaatctataaggttcccctgtgccctttcccacactatcccccaaa------------gagtttactattcaggcttctgttgttaccagttagttttgcccatt-tttgaacctcttataaatgcaatcatgtgg---atattcttttgggtctggc-tttttttcccccccacttaacttagtatctgacatgtctacacattaaagtacagaacagtggtttttatcactgtg--------ctacatattaatagatgtggatatat------gtatttatccatattcctgctCAAGGGtgtacagaaaagatttaaagtaac-----------aggtctgactggtgtctt----ttagctacca-tctgggaacct-aaattttgagttcccaccattcccagaactg-----agtgacttactataccc-------------------------aaatgaacaaac-----------------------------------aatatggtttatgctgaacatcggctttcctcctggagtc-tgaaattt-----tggtacatttcaggcagaggctacctattca
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80537870 495 +  99763055 aagacacagaacatttccaacaatctataaggttcccctgtgccctttcccacactatcccccaaa------------gagtttactattcaggcttctgttgttaccagttagttttgcccatt-tttgaacctcttataaatgcaatcatgtgg---atattcttttgggtctggcttttttttcccccccacttaacttagtatctgacatgtctacacattaaagtatagaacagtggtttttatcactgtg--------ctacatattaatagatgtggatatat------gtatttatccatattcctgctCAAGGGtgtacagaaaagatttaaagtaac-----------aggtctgactggtgtctt----ttagctacca-tccgggaacct-aaattttgagttcccaccattcccagaactg-----agtgacttactataccc-------------------------aaatgaacaaac-----------------------------------aatatggtttatgctgaacatcggctttcctcctggagtc-tgaaattt-----tggtacatttcaggcagaggctacctattca
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       138037 489 -   1709092 aagacacagaacatttccaacactctataaggttcccctatgccctttcccacactatcccccaaa------------gagtttactattcaggcttctgttgttaccagttagttttgcccatt-tttgaacctcttataaatgcaatcatgtgg---gtattgttttgggtctggcttttttttttcccc------acttagtatctgacatgtctacacattaaagtatagaacagtgttttttatcactgtg--------ctacatattaatagatgtggatatat------gtatttatccatattcctgctCAAGGGtgtgcagaaaagatttaaagtaac-----------aggtctgactggtgtctt----ttagctacca-tctgggaactt-aaattttgagttcccaccattcccagaactg-----agtgacttactataccc-------------------------aaatgaacaaac-----------------------------------aatatggtttatgctgaacagcggctttcctcctggagtc-tgaaattt-----tggtacatttcaggcagaggctacctattca
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17299956 487 - 121039945 aagatacagaccatttccaacactctgtaaggttcccctgtgccctttcccacactatcccccaaa------------gagtttactattcaggcttctattgttaccaattagttttgcccatt-tttgaacctcttataaatgcaatcatgtaa---gtattcttttgggtttgacttttttttcccc--------acttagtatctgacatgtctacacattaaagtatagaacaatggtttttattactgtg--------ctatatattaatagatgtggatatat------gtatttatccatattcctgctCAAGGGtgtacagaaaagacttaaagtaac-----------aggtctgactggtgtctt----ttagctacca-tctgggaactt-aaattttgagttcccaccattcccagaactg-----agtgacttactataccc-------------------------aaatgaacaaac-----------------------------------aatatggtttatgccgaacatcagctttcctcctggagtc-tgaaattt-----tggtacatttcaggcagaggctacctattta
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60974294 484 + 169600520 aagataaagaacatttccaacactctataaggttcccctgtgccctttcccacactat-ccccaaa------------gagtttactattcaggcttctgttgttaccaattagttttgcctatt-tttgaacctcttataaatgcaatcatgtag---gtattcttttgggtc--------ttttttcccccacttaacttagtatctgacatgtctacacattgaagtatagaacagtggtttttattactgtgcagt---actacatattaatagatgtggatatat------gtatttatccatattcctgctCAAGGTTGTACAGAAAAGATTTAAAGTAAC-----------AGGTCTGACTGGtgtctt----ttagctacca-tctgggaactt-aaattttgagttcccaccattcccagaactg-----agtgacttactataccc------------------------aaaatgaacaaac-----------------------------------aatatggtttatgctgaacatgggctttcctcccgg---------attt-----tggtacatttcaggcagaggctacctattta
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108501016 484 - 171882078 aagataaagaacatttccaacactctataaggttcccctgtgccctttcccacactat-ccccaaa------------gagtttactattcaggcttctgttgttaccaattagttttgcctatt-tttgaacctcttataaatgcaatcatgtag---gtattcttttgggtc--------ttttttcccccacttaacttagtatctgacatgtctacacattgaagtatagaacagtggtttttattactgtgcagt---actacatattaatagatgtggatatat------gtatttatccatattcctgctCAAGGTTGTACAGAAAAGATTTAAAGTAAC-----------AGGTCTGACTGGtgtctt----ttagctacca-tctgggaactt-aaattttgagttcccaccattcccagaactg-----agtgacttactataccc------------------------aaaatgaacaaac-----------------------------------aatatggtttatgctgaacatgggctttcctcccgg---------attt-----tggtacatttcaggcagaggctacctattta
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       117517 484 -   2311642 aagataaagaacatttccaacactctataaggttcccctgtgccctttcccacactat-ccccaaa------------gagtttactattcaggcttctgttgttaccaattagttttgcctatt-tttgaacctcttataaatgcaatcatgtag---gtattcttttgggtc--------ttttttcccccacttaacttagtatctgacatgtctacacattgaagtatagaacagtggtttttattactgtgcagt---actacatattaatagatgcggatatat------gtatttatccatattcctgctCAAGGTTGTACAGAAAAGATTTAAAGTAAC-----------AGGTCTGACTGGtgtctt----ttagctacca-tctgggaactt-aaattttgagttcccaccattcccagaactg-----agtgacttactataccc------------------------aaaatgaacaaac-----------------------------------aatatggtttatgctgaacatgggctttcctcccgg---------attt-----tggtacatttcaggcagaggctacctattta
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       109600 492 -   1987038 aagataaagaacatttccaacactctataaggttcccctgtgccctttcccacactat-ccccaaa------------gagttaacgattcaggcttctgttgttaccaattagttttgcctatt-tttgaacctcttataaatgcaatcatgtag---gtattcttttgggtc--------ttttttcccccacttaacttagtatctgacatgtctacacattgaagtatagaacagtggtttttattactgtgcagt---actacatattaatagatgtggatatat------gtatttatccatattcctgctCAAGGTtgtacagaaaagatttaaagtaac-----------aggtctgactggtgtctt----ttagctacca-tctgggaactt-aaattttgagttcccaccattcccagaactg-----agtgacttactacaccc------------------------aaaatgaacaaac-----------------------------------aatatggtttatgctgaacatgggctttcctcccggagtc-tgaaattt-----tggtacatttcaggcagaggctacctattta
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21191118 492 -  24206276 aagataaagaacatttccaacactctataaggctcccctgtgccctttcccacactat-ccccaaa------------gagtttaccattcaggcttctgttgtcatcaattagttttgcctatt-tttgaacctcttataaatgcaatcatgtag---gtattcttgtgggtc--------ttttttcccccacttaacttagtatctgacatgtctacacattgaagtacagaagagtggtttttattactgtgcagt---actacatattaatagatgtggatatat------gtatttatccatattcctgctCAAGGTTGTACAGAAAAGATTTAAAGTAAC-----------AGGTCTGACTGGtgtctt----ttagctacca-tctgggaactt-aaattttgagttcccaccattcccagaactg-----agtgatttactataccc------------------------aaaatgaacaaac-----------------------------------aatatggtttatgctgaacatgggctttcctcccggagtc-tgaaattt-----tggtacatttcaggcagaggctacctattta
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       132579 492 -   1397330 aagataaagaacatttccaacactctataaggttcccctgtgccctttcccacactat-ccccaaa------------gagtttactattcaggcttctgttgttaccaattagttttgcctatt-tttgaacctcttataaatgcaatcatgtag---gtattcttttgggtc--------ttttttcccccacttaacttagtatctgatatgtctacacattgaagtatagaacagtggtttttattactgtgcagt---actacatattaatagatgtggatatat------gtatttatccatattcctgctCAAGGTtgtacagaaaagatttaaagtaac-----------aggtctgactggtgtctt----ttagctacca-tctgggaactt-aaattttgagttcccaccattcccagaactg-----agtgacttactataccc------------------------aaaatgaacaaac-----------------------------------aatatggtttatgctgaacatgggctttcctcccggagtc-tgaaattt-----tggtacatttcaggcagaggctacctattta
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       131632 493 -   1784207 aagataaagaacatttccaacactctataaggtccccccgtgccctttcccacactat-ccccaaa------------gagtttactattcaggcttctgttgttaccagttagttttgcctatt-tttgaacctcttataaatgcaatcatgtag---gtattcttttaggtc--------tttcttcccccacttaacttagtatctgacatgtccacacattgaagtatagaacagtggtttttattactgtgcagt---actacatattaatagatgtggatatat------gtatttatccatattcctCCTCAAGGGTGTACAGAAAAGATTTAAAATAAC-----------AGGTCTGACTgttgtctt----ttagctacca-tctgggaacttaaaattttgagttcccaccattcccagaactg-----agtgacttactataccc------------------------aaaatgaacaaac-----------------------------------aatatggtttatgctgaacatgggctttcctcccggagtc-tgaaattt-----tggtacatttcaggcagaggctacctattta
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22337270 481 + 158406734 aaaatacaaaacatttccaacactc--taagattcccctgtgccctttcc--tactgtcccccaaa------------gagcttactattcaggctccttttgttaccaattagttttgcctatt-tttgaacctcttacaaatgcaattatgtag---atattcttttgggtc-------ttttttttccccatttaacttagtatctgagatgtctacacactaatgtatagaacagtag-ttttattactgtgcagtaccacatca---taatagatgtggaaagatcacaatgtatttatccatatttctgctCAAGGGTGTACAGAAAAGATT-AAAGTAAC-----------ATGTCTAACTGGtg---------------cca-tctgggaacct-aaattttgagttcccaccattccctaaactg-----agtgacttactataccc------------------------aaaatgaacaaac-----------------------------------aatagggtttatgctaaatatcagctttcctcctgg--tc-tggaattt-----tggtacatttcaggcagaggctacctattta
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50572642 528 +  54856640 aagatacagaacatttccaacactctgtaaggttcccctgtgccctttcc--cactatcccccaaa------------gagtttactattcaggctcctcttgttaccaattagttttgcctatt-ttttaacctcttacaaatgcaattatgtag---gtattcttttgggtctggc--tttttttccccccatttaacttagtatctgagatgtccacacactaaagtatagaacagtaatttttattactgtgcagtgccacatcatattaacagatgtggacagatcacaacgtatttatccatatttctgctCAAGAGTGTACAGAAAAGATTGAAAGTAAC-----------AGGTCTAACTGGtg---------------cca-cctgggaacct-aaattttgagttcccaccattccctaaactg-----agtgacttactacaccc------------------------aaaatgaacaaacagggtttatgctaaataaacaggtttatgctaacaaacagggtttatgctaaacatcagctttcctcctgg--tc-tggaattt-----tggtacattccaggcagaggctacctattta
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       725267 488 -   2910086 aagatacagaacatttccaacactctgtaaggttcccctgtgccctttcc--cactataccccaaa------------gagtttactattcaggctccttttgttaccaattagttttgcctatt-tttgaacctcttacaaatgcaattatgtaa---gtattcttttgggtctggc---ttttttttccccatttaacttagtatctgagatgtctacacactaaagcatagaacaatagtttttattattgtgcagt---acatcatattaatagatgtggagagatcacaatgtatttatcaatatttctgctCAAGGGCGTACAGAAAAGATTTAAAGTAAC-----------TGGTCtaactgg-g---------------cca-tctgagaacct-aaattttgagttcccaccattccctcaacta-----agtgacttactataccc------------------------aaaatgaacaaat-----------------------------------agtagggtttatgctaaacatcagctttcctcctgg--tc-tggaattt-----tggtacatttcaggcagaggctacctattta
i cebCap1.NW_016107610v1    C 0 I 85
s aotNan1.NW_018505940v1     40737065 491 +  42888418 aagatacagaacatttccaacactctgttaggttcccctgtgccctttcc--cactatcccccaaa------------gagtttactattcaggctccttttgttaccaattagttttgcctatt-tttgaacctcttacaaatgcaattatgtag---atattcttttgggtctggc---tttttcccccccatttaacttagtatctgagatgtctacacactgaagtatagaacaatag-ttttattactgtgcagtagcacatcatattaatagatgtggacagatcacaatgtatttatccatatttctgctCAAGGGTGTACAGAAAAGATTTAAAGTAAC-----------AGGTCTAACTGGtg---------------cca-tctgggaacct-aaattttgagttcccaccattccctaaactg-----agtgacttactataccc------------------------aaaatgaacaaac-----------------------------------aatagggtttatgctaaacatcagctttcctcctgg--tc-tggaattt-----tggtacatttcaggcagaggctacctattta
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             726103 470 -  36342412 aAGATACAGAACATTTCCAACATAAGGTGAGG------Tatgcccctccc---------cccc----------------agtttactactcagattttaggtgttactaattaggtttaactatt-tcttagcctcttataaatggaattctgtag---gtacgct--tgagtctggca---ttttttcttttatt----------tcagacacgtctacatgttgtagtacaatataggag--tttatttctatatagt---acaacattc---cagatgtggatacagcacaacatatttattcatattcctgcttctgggtatacagaagag--ctaaaatagc-----------agatcggactgctgtctt----ttggctgcta-tctgggactgt-ggattttgagttcccaccatcctcag-actgataaaagggaattactatacct------------------------caactgaacaaac-----------------------------------aatatggtttatgccaagtacttgcttccctcctggcgtg-tagaattc-----tggtacattccaggccaaggctgcctattta
i otoGar3.GL873530          I 1806 C 0
s canFam3.chr3               37400047 403 -  91889043 aagatatggaacgtttttagtactggtaaaggttcccgtgtgcccttccc-actctatctccccaccctcccacccctaaattaactattctgacttct-ttgtccttaattggttttgccttttctttgaacttc----aaatgaaatcctgtagcatgtggtctttggagtcttactt--ttttcCCCACCACTTAATTTAGTATCTGAGACTTCTACAAGTCACAGT-------------------------------------------------------------------------------------------------------------GAAGTCCC-----------AAGTTT-ACTGCTG-----------------------------T-AG---------tcccaccattcccagaaccgatag-agtgaattactacacctaaactgtgcacacaatgtgattttaaactgtgcacac-----------------------------------aatgtgatttatgctgaatacctgctctcctcctggagtc-tggaattt-----gggcatattctaagaagaggctgcctatgtg
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1998702 459 -   3943991 --aaaacagaacattt-caacactct-taagattccc----------------------tcacgag------------ttatctgctattctcatttctgccatcatcagttagttttgcctgtt-cttgaaccgcttataaatggaatcatgtagtatgtactcttctgggtctggc----tttttacacttagctaactt----tctgtgattgatactgttt---gtgtaatccagta----ttattactgtgtagt---actac-------caggtgtgaatatactacaacttatttattcattcttctgcttatgagtgtgccagaaagagttaacatagcgagcctttaaaaggtctgcttaaagggttgaccttggctggtgttttgagtactt-ggattttggct----------------gatg-----actgacttactatgcct------------------------aaactgtaca-ac-----------------------------------agtgtgatttctgctggacacctgctttccttctggagtcatgcaatgtctgcctgacatact--------aaaatgccaatgtg
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81444899 1844 + 145441459 I

a score=161629.000000
s hg38.chr15_KI270850v1_alt    428926 20 +    430880 accagtcctcag--------------acacacac
s panTro5.chr15              63581421 20 +  83230942 accagtcctcag--------------acacacac
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80538365 20 +  99763055 accagtcctcag--------------acacacac
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       138526 20 -   1709092 accagtcctcag--------------acacacac
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17300443 20 - 121039945 accagtcctcag--------------acacacac
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60974778 20 + 169600520 accattcctcag--------------acacatac
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108501500 20 - 171882078 accattcctcag--------------acacatac
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       118001 20 -   2311642 accattcctcag--------------acacatac
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       110092 20 -   1987038 accattcctcag--------------acacatac
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21191610 20 -  24206276 accattcctcaa--------------acacatac
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       133071 20 -   1397330 accattcctcag--------------acacatac
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       132125 34 -   1784207 accattcctcagacacacacgcacacacacacac
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22337751 20 + 158406734 accagccctcaa--------------acaaacat
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50573170 20 +  54856640 accagccctcaa--------------ACATACAC
i saiBol1.JH378108          C 0 I 74
s aotNan1.NW_018505940v1     40737556 20 +  42888418 accagccctcaa--------------acaaacat
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             726573 20 -  36342412 accagacctcaa--------------atacaaac
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               37400450 12 -  91889043 accactcttcaa----------------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1999161 18 -   3943991 gccagccccaga--------------aaaggc--
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81444899 1844 + 145441459 I
e cebCap1.NW_016107610v1       725755 85 -   2910086 I

a score=12593.000000
s hg38.chr15_KI270850v1_alt    428946 3 +    430880 gcg
s panTro5.chr15              63581441 3 +  83230942 gtg
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80538385 3 +  99763055 gtg
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       138546 3 -   1709092 gcg
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17300463 3 - 121039945 aca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60974798 3 + 169600520 acg
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108501520 3 - 171882078 acg
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       118021 3 -   2311642 acg
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       110112 3 -   1987038 acg
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21191630 3 -  24206276 gta
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       133091 3 -   1397330 acg
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       132159 3 -   1784207 aca
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22337771 3 + 158406734 aca
i calJac3.chr6              C 0 C 0
s aotNan1.NW_018505940v1     40737576 3 +  42888418 aca
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             726593 3 -  36342412 aca
i otoGar3.GL873530          C 0 C 0
e mm10.chr7                  81444899 1844 + 145441459 I
e dasNov3.JH570731            1999179 0 -   3943991 C
e canFam3.chr3               37400462 0 -  91889043 C
e cebCap1.NW_016107610v1       725755 85 -   2910086 I
e saiBol1.JH378108           50573190 74 +  54856640 I

a score=141053.000000
s hg38.chr15_KI270850v1_alt    428949 32 +    430880 caaacact-----------------------------ctctctc--tctctctctctctgggt
s panTro5.chr15              63581444 34 +  83230942 caaacact-----------------------------ctctctctgtctctctctctctgggt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80538388 34 +  99763055 caaacact-----------------------------ctctctctgtctctctctctctgggt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       138549 31 -   1709092 caaacact-----------------------------c---ctctgtctctctctctctgggt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17300466 29 - 121039945 cgca-act-----------------------------ctctctccg----tctctctctgggt
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60974801 34 + 169600520 cacacact-----------------------------ctctctctgtctctctctctctgggt
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108501523 34 - 171882078 cacgcact-----------------------------ctctctctgtctctctctctctgggt
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       118024 34 -   2311642 cacacact-----------------------------ctctctctgtctctctctctctgggt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       110115 34 -   1987038 cacactct-----------------------------ctctctctgtctctctctctctgggt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21191633 34 -  24206276 cacacact-----------------------------ctctctctgtctctctctctctgggt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       133094 34 -   1397330 cacacact-----------------------------ctctctctgtctctctccctctgggt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       132162 34 -   1784207 cacacact-----------------------------ctctctctctctctctctctctgggt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22337774 44 + 158406734 caatctctccctttctctct-----------------ctctctctctctctctctcgcaca--
i calJac3.chr6              C 0 I 11
s saiBol1.JH378108           50573264 61 +  54856640 CAAActctctctctctctctctttctctctctctcacctctctctctctctctctctcaca--
i saiBol1.JH378108          I 74 I 11
s aotNan1.NW_018505940v1     40737579 32 +  42888418 caatctct-----------------------------ctctctctctctctctctctcaca--
i aotNan1.NW_018505940v1    C 0 I 9
s otoGar3.GL873530             726596 11 -  36342412 ----------------------------------------------------actcactgggt
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               37400462 14 -  91889043 -gaaaaat-----------------------------c-------------------ctgggt
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1999179  7 -   3943991 --------------------------------------------------------tctggga
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81444899 1844 + 145441459 I
e cebCap1.NW_016107610v1       725755 85 -   2910086 I

a score=2874818.000000
s hg38.chr15_KI270850v1_alt    428981 279 +    430880 gcccagattc-taacaagctattctggctggcaacattttacatatgttgtca------gttgtagggg---aatta---aactatgtc---c--tgtttaactctcccgggaaaagaacatt---ggaagcttgta------------ccagattt------caccccacgtgcc------ttttccctttgatggtttttctccatatc-ctttagctg-t----aagc----ttagcta-------tgagaaccactatatgctg-actcctgtgaatcttcctagtcaatcatctaatttagg---cactgtct-tggggGACCA--GACATAACAGGCGTTTG
s panTro5.chr15              63581478 279 +  83230942 gcccagattc-taacaagctattctggctggcaacattttacatatgttgtca------gctgtagggg---aatta---aactatgtc---c--tgtttaactctcccgggaaaagaacatt---ggaagcctgta------------ccagattt------caccccacgtgcc------ttttccctttgatggtttttctccatatc-ctttagctg-t----aagc----ttagtta-------tgagaaccactatatgctg-actcctgtgaatcttcctagtcaatcatctaatttagg---cactgtct-tggggGACCA--GACATAACAGGCGTTTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80538422 279 +  99763055 gcccagattc-taacaagctattctggctggcaacattttacatatgttgtca------gctgtagggg---aatta---aactatgtc---c--tgtttaactctcccgggaaaagaacatt---ggaagcctgta------------ccagattt------caccccacgtgcc------ttttccctttgatggtttttctccatatc-ctttagctg-t----aagc----ttagtta-------tgagaaccactatatgctg-actcctgtgaatcttcctagtcaatcatctaatttagg---cactgtct-tggggGACCA--GACGTAACAGGCGTTTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       138580 279 -   1709092 gcccagattc-taacaagctattctggctggcaacattttacatatgttgtca------gttgtagggg---aatta---aactatgtc---c--tgtttaactctcccgggaaaagaacatt---ggaagcttgta------------ccagattt------caccccacgtgcc------ttttccctttgatggtttttctccatatc-ctttagctg-t----aagc----ttagcta-------tgagtaccactatatgctg-agtcctgtgaatcttcctagtcaatcatctaatttagg---cactgtct-tggggGACCA--GACATAACAGGCGTTTG
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17300495 272 - 121039945 gc-------c-taacaagctattctggctggcaacgttttacatatgttgtca------gttgtggggg---aatta---aactatgtc---c--tgtttaactctcccgggaaaagaacatt---ggaagcttgta------------ccagactt------caccccacgtgcc------ttttccctttgatggcttttctccgtatc-ctttagctg-t----aagc----ttagcta-------tgagtaccactatatgctg-agtcctgtgaatcttcctagtcaatcatctaatttggg---cactgtct-tgggggaccc--gacataACAGGCGtttg
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60974835 278 + 169600520 gcccagattc-taacaagctattctggctggcgacattttacatatgttgtca------gttgtaggg----aatta---aactatgtc---c--tgtttaactctcccgggaaaggaatatt---ggaagcttgta------------ccagactt------cacccaatgtgcc------ttttccctttgatggtttttctctgtgtc-ctttagctg-t----aagc----ttagcta-------tgagtaccactatacgcta-cgtcctgtgaatcttcctagtcaatcatctaatttggg---cactgtct-tgggggaccc--AACATAACAGGCATTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108501557 277 - 171882078 gcccagattc-taacaagctattctggctggcgacattttacatatgttgtca------gttgtaggg----aatta---aactatgtc---c--tgtttaactctcccaggaaaggaatatt---ggaagcttgta------------ccagactt------caccc-atgtgcc------ttttccctttgatggtttttctctgtgtc-ctttagctg-t----aagc----ttagcta-------tgagtaccactatacgcta-agtcctgtgaatcttcctagtcaatcatctaatttggg---cactgtct-tgggggaccc--AACCTAACAGGCGTTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       118058 278 -   2311642 gcccagattc-taacaagctattctggctggcgacattttacatatgttgtca------gttgtaggg----aatta---aactatgtc---c--tgtttaactctcccgggaaaggaatatt---ggaagcttgta------------ccagactt------cacccaatgtgcc------ttttccctttgatggtttttctctgtgtc-ctttagctg-t----aagc----ttagcta-------tgagtaccactatacgcta-agtcctgtgaatcttcctagtcaatcatctaattgggg---cactgtct-tgggggaccc--AACATAACAGGCGTTTA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       110149 279 -   1987038 gcccagattc-taacaagctattctggctggcgacattttacatatgttgtca------gttgtaggg----aatta---aactatgtc---c--tgtttaactgtcccgggaaaggaatatt---ggaagcttgta------------ccagactt------cacccaatgtgcc------ttttccctttgatggtttttctctgtgtc-ctttagctg-t----aagc----ttagcta-------tgagtaccactatacgcta-agtcctgtgaatcttcctagtcaatcatctaatttggg---cactgtctgggggggaccc--aacataACAGGCGTTTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21191667 276 -  24206276 gcccagattc-taacaagctattctggctggtgacattgtacatatgttgtca------gttgtaggg----aatta---aactatgtc---c--tgtttaactctcccgggaaaggaatatt---ggaagcttgta------------ccagactt------cacccaatgtgcc------ttttccctttgatggtttt--tctgtgtc-ctttagctg-t----aagc----ttagcta-------tgagtaccactatacgctg-agtcctgtgaatcttcctagtcaatcatctaatttggg---cactgtct-tgggggaccc--AACATAACAGGCATTTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       133128 279 -   1397330 gcccagattc-taacaagctattctggctggcgacattttacatatgttgtca------gttgtaagg----aatta---aactatgtc---c--tgtttaactgtcccgggaaaggaatatt---ggaagcttgta------------ccagactt------cacccaatgtgcc------ttttccctttgatggtttttctctgtgtc-ctttagctg-t----aagc----ttagcta-------tgagtaccactatacgcta-agtcctgtgaatcttcctagtcaatcatctaatttggg---cactgtctgggggggaccc--aacataACAGGCGTTTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       132196 282 -   1784207 gcctagattc-taacaagctattctggctggcgacattttatatatgttgtca------gttgtggggaattaatta---aactatgtc---c--tgtttaactctcccggaaaaggaacatt---ggaagcttgta------------ccagactt------cacctcatgtgcc------ttttccctttgatggtttttctctgtgtc-ctttagctg-t----aagc----ttagcta-------tgagtaccactatacactg-agtcctatgaattttcctagtcaatcatctaatttggg---cactgtct-tgggggaccc--AACATAACAGGCGTTTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22337829 282 + 158406734 acacacacac-acacaccccaatctggctggtgacattttacatatgttgtca------gttgtggggg---catta---aactatatc---c--catgtaactcccctgggagaagaacact---ggaagcttgtg------------ccagactt------tgccccatctgct------ttttccctttgatgatttttctctgtatc-ctttagttg-t----aaga----ttagcta-------taagtacaactatatgccgaaatcctgtgaatcttcctagtaaatcatctaattttgg---cactgtct-tccaggacccctgacacaACAGCTGttta
i calJac3.chr6              I 11 C 0
s saiBol1.JH378108           50573336 270 +  54856640 acacacacac-acacacgctattctggctggtaacattttacatatgttgtca------gttgtggggc---catta---aactatatc---c--catgtaactcctctgggagaaca-------------cttgta------------ccagactt------tgccccaactgct------ttttccctttgatgg-ttttctctgtatc-ttttagctg-t----aaga----ttagcta-------tgagtaccactatatgctg-agtcctgtgaatcatcctaataaatcatctaatttgga---cactgtct-tcggggacccctgacacaACAGCTGCTTG
i saiBol1.JH378108          I 11 C 0
s cebCap1.NW_016107610v1       725840 282 -   2910086 acacacacac-acacacactattctggctcgtgacattttacatatgttgtca------gttgtggggg---catta---aactatatc---c--cgtgtaactcccctgggagaagaatact---ggaagcatgta------------ccagactt------tgtcccatctgct------ttttccctttgatggtttttctccgtatc-ctttagctgtt----aaga----ttagcta-------tgagtaccactatatgccg-agtcctgtgaatcttcctagtaaatcatctaatttgga---cactgtct-tcggggacccctgacacaACAGCTGTTTG
i cebCap1.NW_016107610v1    I 85 C 0
s aotNan1.NW_018505940v1     40737620 281 +  42888418 acacacacac-acacacgctattctggctggtgacattttacatatgttgtca------gttgtggggg---catta---aactatatc---c--cgtgtaacttccctaggagaagaacact---ggaagcttgta------------ccagactt------tgccccatctgct------ttttccctttgatggtttttctctgtatc-ctttagctg-t----aagc----ttagcta-------tgagtaccactatatgccg-agtcctgtgaatcttcctagcaaatcatctaatttggg---cactgtct-tcagggacccctgacacaACAGCTGTTTG
i aotNan1.NW_018505940v1    I 9 C 0
s otoGar3.GL873530             726607 275 -  36342412 gccaagtttc-taacaagcttttctgactt------ttttacatgtgttggta------gttggaggga---aatta---aactacatc---c--tgtaaaacttgccctacgagaggaccctgggggaagcttgta------------ctagactt------tgccccacccacc------ttttccctt---cagtttttctttgtatcgctttttctt-t----cttt----tcttttc-------tttttttcagttttctctg-aatcctgtgtatcctcccagcaaatcatctaatgcaag---catggtct-tcgggaatgc-tgacagaatggccatttg
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               37400476 304 -  91889043 gccaagtctc-tagcaagcttccctggttggcagcatttcatgtgtgttgtcacaactcattgtggggg---agctaagtaactgagcttaat--tgtatgactccc--------------tt---ggaagcttgtacctggttttccccccgactt------tgttccaagtgcc------ttttcccgttgctggtttttctctgtatc-ttctggctg-t----gataagtgttagccatatgtgctgagtacaattgtatactg-agtcctgagaaatcttctagtgactcatcaaacctgggggccccagact-t-ggggaccactgacacaATGGGCATCAg
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1999186 280 -   3943991 acctagtctcttaatgtgcttccctggttg-caacatttccagtgtgttgtcacagctcattgctgggg---aaata---aaatatgtc---ttgtgtttaatttcct---gagaacaccctt---ggaagcttgtg------------cttggtttcctttgcacctcacttttatacaggttttctctttgctcatcttgctttgtatc-ttacagctg-taataaatc----ttagctg-------tgagtacaa--atttgctg-agtcctgtgattcctcctagtgaatcattgaacctggg---ggtggtct-tggggaccc--------------------
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81444899 1844 + 145441459 I

a score=1073478.000000
s hg38.chr15_KI270850v1_alt    429260 129 +    430880 TTGTTTTGTCCTA-tttttagggacagggtctggatatgtggtccagaccagaattgaactcctaggctcaagggattctcctgcctcagcctccccggtagctggtac--tacaggtgCCACAACTAGCTT
s panTro5.chr15              63581757 129 +  83230942 TTGttttgtccta-tttttagggacagggtctggatatgtggtccagaccagaaatgaactcctaggctcaagggattctcctgcctcagcctccccggtagctggtac--tacaggtgccacaactggctt
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80538701 129 +  99763055 TTGttttgtccta-tttttagggacagggtctggatatgtggtccagaccagaaatgaactcctaggctcaagggattctcctgcctcagcctccccggtagctggtac--tacaggtgccacaactggctt
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       138859 129 -   1709092 TTGttttgtccta-tttttagggacagggtctggatatgtggtccagaccagaattgaactcctaggctcaagggattctcctgcctcagcctccccggtagctggtac--tacaggtgccacaactggctt
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17300767 130 - 121039945 ttgttttgccctattttttagggacagggtctggatatgtggtccagaccagacttgaactcctaggctcaagggattttcctgcctcagcctccccggtagctggtac--tacaggtgCCACAACCGGCTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60975113 129 + 169600520 TTGTTTTGTCCTA-Cttttagggacagggtctggatatgtggtccagacccgtcttgaactcctaggctcaagggactctcctgcctcagcctccccagtagctggtgc--tacaggcgCCATAACCAGCTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108501834 129 - 171882078 TCGttttgtccta-cttttagggacagggtctggatatgtggtccagacccgtcttgaactcctaggctcaagggactctcctgcctcagcctccccagtagctggtgc--tacaggcgCCATAACCAGCTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       118336 129 -   2311642 TTGTTTTGTCCTA-Cttttagggacagggtctggatatgtggtccagacccgtcttgaactcctaggctcaagggactctcctgcctcagcctccccagtagctggtgc--tacaggcaccataaccagctt
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       110428 129 -   1987038 TTGttttgtccta-cttttagggacagggtctggatatgtggtccagacccgtcttgaactcctaggctcaagggactctcctgcctcagcctccccagtagctggtgc--tacaggcgCCATAACCAGCTT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21191943 129 -  24206276 TTGTTTTGTCCTA-Cttttagggacagggtctggatatgtggtccagacccgtcttgaactcctaggctcaagggattctcctgcctcagcctccccagtagctggtgc--tacaggcgccataaccagctt
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       133407 129 -   1397330 TTGTTTTGTCCTA-Cttttagggacagggtctggatatgtggtccagacccgtcttgaactcctaggctcaaggcactctcctgcctcagcctccccagtagctggtgc--tacaggcaccataaccagctt
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       132478 129 -   1784207 TTGTTTTGTCCTA-Cttttagggacagggtctggatatgaggtccagacctgtcttgaactcctaggctcaagggattctcctgcctcagcctccccagtagctggtgc--tacaggtgccacaaccagctt
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22338111 129 + 158406734 ttgctttctccta-tttttagggacagggtccggacatgttgcccagactgaacttcaaccgataggctcaaggaattctcccacctctgccttcccagtagctgatac--tacaggagcCACACCCAGATT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50573606 129 +  54856640 TTGttttctccta-tttttagtgacaggttctggacatgttgcccagactgaacttgaactgataggctcaaggtattctcccgcctctgccttcccagcagctgatac--tacaggcgcCACACCCAGATT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       726122 129 -   2910086 TGGttttctccta-tttttagggacagggtctggacatgttgcccacactgaacttgaactgataggctcaagggattctcccgcctctgccttcccagtagctgatac--tacaggcgccacacccagact
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40737901 131 +  42888418 TTGttttctccta-tttttagggacagggtctggacatgatgcccagactgaacttgaactgataggctcaagggattctcccgcctctgccttcccagtagctgatactatacaggcaccacacccagatt
i aotNan1.NW_018505940v1    C 0 C 0
s canFam3.chr3               37400780   8 -  91889043 --------------ttttcagt--------------------------------------------------------------------------------------------------------------
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1999466  22 -   3943991 ------------------------------------------------------ttga-----------------------------------------------------aacagtggccat---tggttt
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81444899 1844 + 145441459 I
e otoGar3.GL873530             726882   0 -  36342412 C

a score=1522668.000000
s hg38.chr15_KI270850v1_alt    429389 124 +    430880 GCTttttcttcagattttgaatattatgaataaaactgctgtgaatattcttgtgcatgcctttttatactcatatgtgctcatttctcttgcacataggaacacaagtg-gactaccaggtcat
s panTro5.chr15              63581886 124 +  83230942 gctttttcttcagattttgaatattatgaataaaactgctgtgaatattctagtgcatgcctttttatactcacatgtgctcatttctcttgcacataggaacacaagtg-gactaccaggtcat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80538830 124 +  99763055 gctttttcttcagattttgaatattatgaataaaactgctgtgaatattctagtgcatgcctttttatactcacatgtgctcatttctcttgcacataggaacacaagtg-gactaccaggtcat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       138988 124 -   1709092 gctttttcttcagattttgaatattatgaataaaactgctgtgaatattcttgtgcatgcctttttatactcacatgtgctcatttctcttgcacataggaacacaagtg-gactaccaggtcat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17300897 124 - 121039945 GCTttttcttcagattttgaatattatgaataaaactgctgtgaatattcttgtgcatgcctttttatactcacatgtactcatttctcttgcacataggaacacaagtg-gactaccaggtcat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60975242 124 + 169600520 GCCttttcttcagattttaaatattatgaataaaactgctgtgaatattcttgtgcatgcctttttatactcatatgtactcacttctcttgcatataggaacacaagtg-gatcactaggtcat
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108501963 124 - 171882078 GCCttttcttcagattttaaatattatgaataaaactgctatgaatattcttgtgcatgcctttttatactcatatgtactcacttctctcgcatataggaacacaagtg-gatcactaggtcat
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       118465 124 -   2311642 gccttttcttcagattttaaatattatgaataaaactgctgtgaatattcttgtgcatgcctttttatactcatatgtactcacttctcttgcatataggaacacaagtg-gatcactaggtcat
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       110557 124 -   1987038 GCCttttcttcagattttaaatattatgaataaaactgctgtgaatattcttgtgcatgcctttttatactcatatgtactcacttctcttgcatataggaacacaagtg-gatcacaaggtcat
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21192072 124 -  24206276 gccttttcttcagattttgaatattatgaataaaactgctgtgaatattcttgtgcatgcctttttatactcatatgtactcacttctcttgcatataggaacacaagtg-gatcactaggtcat
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       133536 124 -   1397330 gccttttcttcagattttaaatattatgaataaaactgctgtgaatattcttgtgcatgcctttttatactcatatgtactcacttctcttgcatataggaacacaagtg-gatcactaggtcat
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       132607 123 -   1784207 gtcttttcttcagattttgaatattatgaataaaactgctgtgaatattc-tgtgcatgcctttttatactcatatgtactcatttctcttgcatataggaacacaagtg-gattactaggtcat
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22338240 124 + 158406734 GCTGCTGCttcagattttgaatattatgaataaaactgctgcgaatattcttgtgcatgcctttttatactcacatgtactcatgtctcttgcatataggaacacaagtg-gattgctaggtcat
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50573735 120 +  54856640 GCTGCTtcttcagattttg---attatgaataaaactgctgcgaatattcttgcgcatgcctttttatactcacatgtactcatttctcttgcatataggaacacaagtg-gattgct-ggtcat
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       726251 123 -   2910086 gctgcttcttcagattttgaatattatgaataaaactgctgtgaatattcttgtgcatgcctttttatactcacatgtactcatttatcttgcatata-gaacacaagtg-gattgctaggtcat
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40738032 114 +  42888418 gctgcttcttcagattttgaatattatggataaaactgctgtgaatattcttgtgcatgccttttta----------tactcatttctcctgcatataggaacacaagta-gattgctaggtcat
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             726882 123 -  36342412 agtttttcttcagattttgtatgttatgaataaaactgctgtgaatattcttgtgtatgccttttta--gttatatgtactcatttctcttgcatacaagaacacaagtacaactgctagttcac
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               37400788 121 -  91889043 -ttttcttttcagggttcaaa---tgtaactaaaattgctgtggctgttcttctacatgcttttttacaatctcatgtactcttttctcttgcatataggagcctgagtgcaattgctgggtcat
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1999488 117 -   3943991 ----ggttttaagattttg---actatgaataaaactgttgtgaatattcttgtacat-tttttttctggtcatatgcactcatttcccttagatatagaaccatgagtgcaattcctggatcat
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81444899 1844 + 145441459 I

a score=2063667.000000
s hg38.chr15_KI270850v1_alt    429513 192 +    430880 aagc----t-agtaccccttgcgcttaaaattctagcaatactgTACTTCTAGTTGCCTAAAAACAGCCCTGTTTCATATCTCCTTgtccttatacatgttgttccttttgcctagaatgtccttcccACTCCCT--ACACTATGCCTGTTTTGGCAATAACCTTTAAATCTT-TTACCTGCCTACTTCTGATGTTATTT
s panTro5.chr15              63582010 192 +  83230942 aagc----t-agtaccccttgcgcttaaaattctagcaatactgTACTTCTAgttgcctaaaaacagccctgtttcatatctccttgtccttatacatgttgttccttttgcctagaatgtccttcccactccct--ACACTATGCCTGTTTTGGCAATAACCTTTAAATCTT-TTACCTGCCTACTTCTGATGTTATTT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80538954 192 +  99763055 aagc----t-agtaccccttgcgcttaaaattctagcaatactgTACTTCTAGTTGCCTAAAAACAGCCCTGTTTCATATCTCCTTgtccttatacatgttgttccttttgcctagaatgtccttcccACTCCCT--ACACTATGCCTGTTTTGGCAATAACCTTTAAATCTT-TTACCTGCCTACTTCTGATGTTATTT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       139112 192 -   1709092 aagc----t-agtaccccttgcgcttaaaattctagcaatactgTACTTCTAGTTGCCTAAAAACAGCCCTGtttcatatctccttgtccttatacatgttgttccttttgcctagaatgtccttcccactccct--ACACTATGCCTGTTTTGGCAATAACCTTTAAATCTT-TTACCTGCCTACTTCTGATGTTATTT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17301021 192 - 121039945 aagc----t-aggggtacttgcgcttaaaattctagcaatattgTACTTCTAGTTGCCTAAAAACAGCCCTGTTTCATATCTCCTTgtccttatacatgttgttccttttgcctagaatgcccttcccACTCGCT--ATACTATGCCTGTTTTGGCAATAACCTTTAAATCTT-TTACCTGCCTACTTCTGATGTTATTT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60975366 192 + 169600520 aggc----t-agtatcccttgtgcttaaAATTCTAGCAATATTGTACTTCTAGTTGCCTAAAAACAGCCCTGTTTCATATCTCCTTGTCCTTACAC--GTTATTCCTTTCGCTTAGAATGTCCTTCCCACCCCCTACACACTATGCCTGTTTTGGCAATAACCTTCAAATCTT-TTACCTGCCTAGTTCTGATGTTATTT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108502087 192 - 171882078 aggc----t-agtatcccttgtgcttaaAATtctagcaatattgtacttctagttgcctaaaaacagccctgtttcatatctccttgtccttacac--gttattcctttcgcttagaatgtccttcccaccccctACACACTATGCCTGTTTTGGCAATAACCTTCAAATCTT-TTACCTGCCTAGTTCTGATGTTATTT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       118589 192 -   2311642 aggc----t-agtatcccttgtgcttaaAATCctagcaatattgtacttctagttgcctaaaaacagccctgtttcatatctccttgtccttacac--gttattcctttcgcttagaatgtccttcccaccccctACACACTATGCCTGTTTTGGCAATAACCTTCAAATCTT-TTACCTGCCTAGTTCTGATGTTATTT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       110681 192 -   1987038 aggc----t-agtatcccttgtgcttaaAATtctatcaatattgtacttctagttgcctaaaaacagccctgtttcgtatctccttgtccttacac--gttattcctttcgcttagaatgtccttcccaccccctacacactacgcctgttttggcaataaccttcaaatctt-ttacctgcctagttctgatgttattt
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21192196 194 -  24206276 aggg----t-agTATCCCTTGTGCTTAAAATtccagcaatattgtacttctagttgcctaaaaacagccctgtttcatatctccttgtccttacacatgttattcctttcgcctagaatgtccttcccaccccctACACACTATGCCTGTTTTGGCAATAACCTTCAAATCTT-TTACCTGCCTAGTTCTGATGTTACTT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       133660 192 -   1397330 aggc----t-agtatcccttgtgcttaaAATtctatcaatattgtacttctagttgcctaaaaatagccctgtttcatatctccttgtccttacac--gttattcctttcgcttagaatgtccttcccacccccCACACACTACGCCTGTTTTGGCAATAACCTTCAAATCTT-TTACCTGCCTAGTTCTGATGTTATTT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       132730 192 -   1784207 aggc----t-agtatcccttgtgcttaaAATTCTAGCAATATTGTACTTCTAGTTGCCTAAAAACAGCCCTGTTTCATATCTCCTTGTCCTTACAC--GTTATTCCTTTCGCCTAGAATGTCTTTCCCACCCCCTACACACTATGCCTGTTTTGGCAATAACCTTTAAATCTT-TTACCTGCCTAGTTCTGATGTTATTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22338364 181 + 158406734 agac----t-agTACGCCTTGCACTTAAAATtctggcaatattgtactcctagttgcctaacaacagccctgtttcatacctccttgtccttgtatatgttgtaccttttgcctagaatgtccttcccagcccat--at----------ctttggc-ataaccttttaatctt-ttaCCTGCCTACTATTGATGTTATTT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50573855 191 +  54856640 aggctagTT-AGTACCCTTTGCACTTAAAATtctggcaatattgtactcctagttgcctaacaacagccctgtttcatacctccttgtccttgtatatgttgttccttttgactagaatgtccttcccATCCCAT--ACACTAAA----TTTTGGC-ATAACCTTTTAATCTT-TTACCTGCCTACTATTGATGTTATTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       726374 188 -   2910086 aggc----t-agTACCCCTTGCACTTAAAATTCTGGCAATATTGTACTCCTAGTTGCCTAACGACAGCCCTGTTTCATACCTCCTTGTCCT--TATATGTTGTTCCTTTTGCCTAGAATGTCCTTCCCATCCCAT--ACACTATGCCT-GTTTGGC-ATAACCTTTTAATCTT-TTGCCTGCCTACTATTGATGTTATTT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40738146 180 +  42888418 aggc----t-agTAccccttgcacttaaaattctggcaatattgtactcctagttgcctaacaacagcc--gtttcatacctccttgtccttgtatatgttgttccttttgcctagaatgtccttcccatcccct--acacTACGCCT-CTTTGGC---------TTAATCTT-TTGCCTGCCTACTATTGATGTTATTT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             727005 143 -  36342412 agga----t-agTACGCCATGCACCTAAAATTCTAACACTATAGTACTTCCAG------------------------TACCTCCTTGTCTTTGTAC---------------------ATGCTCTCCTCATCTTCT--ATA--ATGCCTGTTTTGCC-AAAGCCTCTTAATCTT-TTATCTGTCTACTCCCCA-GTTATTT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81446743 123 + 145441459 aaGA----T-GGTACACTTTTGTATTAAAATTTTAGTGATATTGTACT---AGTTCCCCCAAAATAACCTT-----------------------------------------------------------CCTCT-----CTAAGCCTGTTTTGG----AAGTCTTTAATTTT-TTAAATACCTACTACCCATGTTATTT
i mm10.chr7                 I 1844 C 0
s canFam3.chr3               37400909 179 -  91889043 aggg----t-GTT--CCTTGGCACTTAAAATtctagcagtagtgtacttctagctgcctaaaaccatccctgtttcatacctccttgcctttgtac---atgttctttttgtctagaataccctccccaccc-----cTACTGTGACTAGT------AAAACCTTTTAATCTTCTTAccttcctactactcttgttactt
i canFam3.chr3              C 0 n 0
s dasNov3.JH570731            1999605 173 -   3943991 agga----tGAGTACCTCTTGCACATAATATTGTACAAATACTGTACTTCTAGTTGCCTAAAAGAATTGATCTTT---------------TTGTATATGTTGTTTCTTTTGCCTAGAGTGCCCTCCCTACCC-----CCATTATGTCT-TTTTGCCAAAACCTTTTTAATCTT-TCACCTACCCACTACTG-TGTTGTTT
i dasNov3.JH570731          C 0 C 0

a score=30465.000000
s hg38.chr15_KI270850v1_alt    429705 2 +    430880 CT
s panTro5.chr15              63582202 2 +  83230942 CT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80539146 2 +  99763055 CT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       139304 2 -   1709092 CT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17301213 2 - 121039945 CT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60975558 2 + 169600520 CT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108502279 2 - 171882078 CT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       118781 2 -   2311642 CT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       110873 2 -   1987038 cc
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21192390 2 -  24206276 CT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       133852 2 -   1397330 CT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       132922 2 -   1784207 CT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22338545 2 + 158406734 CT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50574046 2 +  54856640 CT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       726562 2 -   2910086 CT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40738326 2 +  42888418 CT
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             727148 2 -  36342412 CT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81446866 2 + 145441459 CT
i mm10.chr7                 C 0 C 0
s dasNov3.JH570731            1999778 2 -   3943991 Ct
i dasNov3.JH570731          C 0 n 0
e canFam3.chr3               37401088 0 -  91889043 I

a score=17100.000000
s hg38.chr15_KI270850v1_alt    429707 1 +    430880 G
s panTro5.chr15              63582204 1 +  83230942 G
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80539148 1 +  99763055 G
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       139306 1 -   1709092 G
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17301215 1 - 121039945 G
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60975560 1 + 169600520 G
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108502281 1 - 171882078 G
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       118783 1 -   2311642 G
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       110875 1 -   1987038 G
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21192392 1 -  24206276 G
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       133854 1 -   1397330 G
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       132924 1 -   1784207 G
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22338547 1 + 158406734 G
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50574048 1 +  54856640 G
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       726564 1 -   2910086 G
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40738328 1 +  42888418 G
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             727150 1 -  36342412 G
i otoGar3.GL873530          C 0 I 955
s mm10.chr7                  81446868 1 + 145441459 G
i mm10.chr7                 C 0 I 1372
s dasNov3.JH570731            1952979 1 +   3943991 G
i dasNov3.JH570731          I 8949 C 0
e canFam3.chr3               37401088 0 -  91889043 I

a score=75966.000000
s hg38.chr15_KI270850v1_alt    429708 7 +    430880 ATGAGGA
s panTro5.chr15              63582205 7 +  83230942 ATGAGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80539149 7 +  99763055 ATGAGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       139307 7 -   1709092 ATGAGGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17301216 7 - 121039945 ATGAGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60975561 7 + 169600520 ATAAGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108502282 7 - 171882078 ATGAGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       118784 7 -   2311642 ATGAGGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       110876 7 -   1987038 ATGAGGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21192393 7 -  24206276 ATGAGGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       133855 7 -   1397330 ATGAGGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       132925 7 -   1784207 ATGAGGA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22338548 7 + 158406734 ATGAGAA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50574049 7 +  54856640 ATGATAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       726565 7 -   2910086 ATGAGAA
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40738329 7 +  42888418 ATGAGAA
i aotNan1.NW_018505940v1    C 0 C 0
s dasNov3.JH570731            1952980 7 +   3943991 GTGAGGA
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81446869 1372 + 145441459 I
e canFam3.chr3               37401088 0 -  91889043 I
e otoGar3.GL873530             727151 955 -  36342412 I

a score=192711.000000
s hg38.chr15_KI270850v1_alt    429715 18 +    430880 AAAGGAAGAAATTGGTTC
s panTro5.chr15              63582212 18 +  83230942 AAAGGAAGAAATTGGTTC
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80539156 18 +  99763055 AAAGGAAGAAATTGGTTC
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       139314 18 -   1709092 AAAGGAAGAAATTGGTTC
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17301223 18 - 121039945 AAAGGAAGAAATTGGTTC
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60975568 18 + 169600520 AAAGGAAGAAATTGGTTC
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108502289 18 - 171882078 AAAGGAAGAAATTGGTTC
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       118791 16 -   2311642 AAAGGAAGAAATTGGT--
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       110883 18 -   1987038 AAAGGAAGAAATTGGTTC
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21192400 18 -  24206276 AAAGGAAGAAATTGGTTC
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       133862 18 -   1397330 AAAGGAAGAAATTGGTTC
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       132932 18 -   1784207 AAAGGAAGAAATTGGTTC
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22338555 18 + 158406734 AAAAGAAAAAATTGGTTC
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50574056 18 +  54856640 AAAAGAAGAAACTGTTTC
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       726572 18 -   2910086 AAAAGAAGAAATTGCTTC
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40738336 18 +  42888418 AAAAGAAGAAATTGGTTC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             728106 18 -  36342412 aaaGAAGAAAATGGGTTC
i otoGar3.GL873530          I 955 C 0
s dasNov3.JH570731            1952987 11 +   3943991 ----GAGGGA---GGTTT
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81446869 1372 + 145441459 I
e canFam3.chr3               37401088  0 -  91889043 I

a score=117696.000000
s hg38.chr15_KI270850v1_alt    429733 9 +    430880 TGTTTTTAT
s panTro5.chr15              63582230 9 +  83230942 TGTTTTTAT
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80539174 9 +  99763055 TGTTTTTAT
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       139332 9 -   1709092 TGTTTTTAT
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17301241 9 - 121039945 TGTTTTTAT
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60975586 9 + 169600520 TGTTTTTAT
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108502307 9 - 171882078 TGTTTTTAT
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       118807 9 -   2311642 TGTTTTTAT
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       110901 9 -   1987038 TGTTTTTAT
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21192418 9 -  24206276 TGTTTTTAT
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       133880 9 -   1397330 TGTTTTTAT
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       132950 9 -   1784207 TGTTTTTTT
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22338573 9 + 158406734 TATTTTTAT
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50574074 9 +  54856640 TGTTTTTTT
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       726590 9 -   2910086 TGTTTTTAT
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40738354 9 +  42888418 TGTTTTTAC
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             728124 9 -  36342412 TGTTTTTAG
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54492846 9 +  91889043 TGTTTTTAA
i canFam3.chr3              I 5084 C 0
s dasNov3.JH570731            1952998 9 +   3943991 TGCTTTTAG
i dasNov3.JH570731          C 0 C 0
e mm10.chr7                  81446869 1372 + 145441459 I

a score=2698786.000000
s hg38.chr15_KI270850v1_alt    429742 246 +    430880 ATCTGCTGGGTTTAACATACCTCAGATAGATACACGCATTCGGTAGTCCAATCAGA---AGTATAAGTCTTCAGAACAACCAAGGCTAAAGAGCTCAATCTAAAACTTGGGCACACAACAGTC----AACTGG----TGCTTCTATAGGAACACATGGGTCTCCTGTATATAT--AAGGAGACAGGAATGATCCAACAGGGTTGAACTGTGAAGAATGCGGCATTTGG--------GGAGAAAAGGAAGCCTGCAAGTACCAAGACA
s panTro5.chr15              63582239 246 +  83230942 ATCTGCTGGGTTTAACATACCTCAGATAGATACATGCATTCGGTAGTCCAATCAGA---AGTATAAGTCTTCAGAACAACCAAGGCTAAAGAGCTCAATCTAAAACTTGGGCACACAACAGTC----AACTGG----TGCTTCTATGGGAACACATGGGCCTCCTGTATATAT--AAGGAGACAGGAATGATCCAACAGGGTTGAACTGTGAAGAATGCGGCATTTGG--------GGAGAAAAGGAAGCCTGCAAGTACCAAGACA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80539183 246 +  99763055 ATCTGCTGGGTTTAACATACCTCAGATAGATACATGCATTCGGTAGTCCAATCAGA---AGTATAAGTCTTCAGAACAACCAAGGCTAAAGAGCTCAATCTAAAACTTGGGCACACAACAGTC----AACTGG----TGCTTCTATAGGAACACATGGGCCTCCTGTATATAT--AAGGAGACAGGAATGATCCAACAGGGTTGAACTGTGAAGAATGTGGCATTTGG--------GGAGAAAAGGAAGCCTGCAAGTACCAAGACA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       139341 246 -   1709092 ATCTGCTGGGTTTAACATACCTCAGATAGATACATGCATTCGGTAGTCCAATCAGA---AGTATAAGTCTTCAGAACAACCAAGGCTAAAGAGCTCAATCTAAAACTTGGGCACACAACAGTC----AACTGG----TGCTTCTATAGGAACACATGGGCCTCCTGTATATAT--AAGGAGACAGGAATGATCCAACAGGGTTGAACTGTGAAGAATGTGGCATCTGG--------GGAGAAAAGGAAGCCTGCAAGTACCAAGACA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17301250 246 - 121039945 ATCTGCTGGGTTTAACATACCTCAGATAGATACATGCATTCGGTAGTCCAACCAGA---AGTATAAGTCTTCAGAACAACCAAGGCTAAAGAGCTCAATCTAAAACTTGGGCACACAACAGTC----AACTGG----TGCTTCTATAGGAACACATGGGCCTCCTGTATATAT--AAGGAGACAGCAATGATCCAACAGGGTTGAACTGTGAAGAATGTGGCATTTGG--------GGAGAAAAGGAAGCCTGCAAGTACCaagaca
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60975595 245 + 169600520 ATCTGTTGGGTTTAACATACCTC----AGACACATGCATTCCGTAGTCCAATCACA---AGTATAAGTCTTCAGAACAACCAAGGCTAAAGAACTCAATCTAAAACTTGGGCACACAACAGAC----AACTGGTGCTTGCTTCTACA-GAACACATGGGCCTCCTGTATATAT--AAGGAGACAGGAATGATCCAGCAGGGTTGAACTGTGAAGAATGTGGCATTTGG--------GGAGAAAAGGAAACCTGCAAGTACCaagaca
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108502316 245 - 171882078 ATCTGGTGGGTTTAACATACCTC----AGACACATGCGTTCCGTAGTCCAATCACA---TGTATAAGTCTTCAGAACAACCAACGCTAAAGAACTCAATCTAAAACTTGGGCACACAACAGAC----AACTGGTGCTTGCTTCTACA-GAACACATGGGCCTCCTGTATATAT--AAGGAGACAGGAATGATCCAACAGGGTTGAACTGTGAAGAATGTGGCATTTGG--------GGAGAAAAGGAAACCTGCAAGTACCaagaca
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       118816 245 -   2311642 ATCTGTTGGGTTTAACATACCTC----AGACACATGCATTCCATAGTCCAATCACA---AGTATAAGTCTTCAGAACAACCAAGGCTAAAGAACTCAATCTAAAACTTGGGCACACAACAGAC----AACTGGTGCTTGCTTCTACA-GAACACATGGGCCTCCTGTATATAT--AAGGAGACAGGAATGATCCAACAGGGTTGAACTGTGAAGAATGCGGCATTTGG--------GGAGAAAAGGAAACCTGCAAGTACCaagaca
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       110910 249 -   1987038 ATCTGTTGGGTTTAACATACCTC----AGACACATGCATTCCGTAGTCCAATCACA---AGTATAAGTCTTTAGAACAACCAAAGCTAAAGAACTCAATCTAAAACTTGGGCACACAACAGACAACTAACTGGTGCTTGCTTCTACA-GAACACATGGGCCTCCTGTATATAT--AAGGAGACAGGAATGATCCAACAGGGTTGAACTGTGAAGAATGTGGCATTTGG--------GGAGAAAAGGAAACCTGCAAGTACCaagaca
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21192427 243 -  24206276 ATCTGCTGGGTTTAACATACCTC----AGACACATGCATTCCGTAGTCCAATCACA---AGTATAAGTCTTCAGAACAACCAAGGCTAAAGAACTCAATCTAAAACTTGGGCACACAACAGAC----AACTGGTGCTTGCTTCTACA-GAACACATGGGCCTCCTGTATATAT--AAAGAGACAGGAATGATCCAATAGGGTTGAACTGTGAAGAA--TGGCATTTGG--------GGAAAAAAGGAAACCTGCAAGTACCaagaca
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       133889 249 -   1397330 ATCTGTTGGGTTTAACATACCTC----AGACACATGCATTCCGTAGTCCAATCACA---AGTATAAGTCTTTAGAACAACCAAAGCTAAAGAACTCAATCTAAAACTTGGGCACACAACAGACAACTAACTGGTGCTTGCTTCTACA-GAACACATGGGCCTCCTGTATATAT--AAGGAGACAGGAATGATCCAACAGGGTTGAACTGTGAAGAATGTGGCATTTGG--------GGAGAAAAGGAAACCTGCAAGTACCaagaca
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       132959 245 -   1784207 ATCTTCTGGGTTTAACATACCTC----AGACACATGCATTCCGTAGTCCAATCACA---AGTATAAGTCTTCAGAACAACCAAGGCTAAAGAACTCAATCTAAAACTTGGGCACACAACAGAC----AACTGGTGCTTGCTTCTATA-GAACACATGGGCCTCCTGTATATAT--AAGGAGACAGGAATGATCCAACAGGGTTGAACTGTGAAGAACGTGGCATTTGG--------GGAGAAAAGGAAACCTGCAAGTACCAAGACA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22338582 243 + 158406734 ATCTGCTGCATTTAACATACCTCAGATAGATACATGCATTCGGTATTCCAAACAGA---AGTATAGGTCTTCAGAACAACCAAGGCTAAAGAGCTCAATCTAAAACTTGGTCAC---ACAGGT----AATTGG----TGATCCTACAGGAACGCGTGGGCCTCCTATATATAT--AAGGAGACAGGAACTATCCAACAGGGTTGAACTGTTGAGAATGTGGCATTTAG--------GGAGAAAAGGAAGCCTGCAAGTACCAAGACA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50574083 219 +  54856640 ATCTGCTGCATTTAACATACCTCAGAT--------------------------AGA---AGTATAGGTCTTCAGATCAACCAAGGCTAAAGAGCTCAATCTAAAACTTGGTCAC---ACAGAT----AACTGG----TGATCCTACAGGAACACGTGGGCCTCCTATATATACAAAAGGAGACAGGAACTATCCAACAGGGTTGACCTGTGGAGAATGTGGCATTCAG--------GGAGAAAAGGAAGCCTGCAAGTACCAAGACA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       726599 243 -   2910086 ATCTGCTGCATTTAACATACCTCTGATAGATATATGCATTTGGTACTCCAATCAGA---AATATAGGTCTTCAGAACAACCAAGGCCAAAGAGCTCAATCTAAAACTTGGTCAC---ACAGAT----AACTGG----TGATCCTACAGGAACACGTGGACCTCCTATATATAT--AAGGAGACAGGAACTATCCAACAGGGTTGAACTGTGGAGAATGTGGTGTTCAG--------GGAGAAAAGGAAGCCTGCAAGTACCAAGACA
i cebCap1.NW_016107610v1    C 0 I 132
s aotNan1.NW_018505940v1     40738363 245 +  42888418 ATCTGCTGCATTTAACACACCTCAGATAGATATATGCATTCGGTACTCTAATCAGA---AGTATAGGTCTTCAGAACAACCAAGGCTAAAGAACTCAATCTAAAACTTGGTCAC---ACAGAT----AACTGG----TGATCCTACAGGAACACGTGGGCCTCCTATATATATATAAGGAGACAGGAACTATCCAACAGGGTTGAACTGTGGAGAATGTGGCATTCAG--------GGAGAAAAGGAAGCCTGCAAGTACCAAGACA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             728133 209 -  36342412 ATTTGTTGGGCTTAACATGCCGCA---GAACATATGCATATCG------------A---AGTATAGCTCTGCAG---AACCAAGGCTGAAGAGCCCGGCCTAAAACTTGGACACACAGTATTC------CTAG---------------GAATACATGGGTTCCCTGAAT------AAGGACAGAGGAATGATCCAACA-GACTGAACAGTGAAGAATGTGGCATTCA---------GGAGGAAAGGAAGCCTGCACATGCCAAGCCA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81448241 219 + 145441459 ACCTGCTACATTTAACATGCATCAGGAAGACCGATGCC-------------------------TAGATCTTGAGAATAAACAGCAGTAAA-----CAGCCTAAAACTTGGTCAC---ACAGACA---AACGGG----TATAGCTATG-GAAAACCATTGCCCCCTATACAGAT--GA----ACATGTCTGAGCTAATC-GGCTGAACCATGGGGAGTTCAACACCAAGATGAAGAAATAAAAATGGAAGCCTGTAATCACCGAGACC
i mm10.chr7                 I 1372 C 0
s canFam3.chr3               54492855 219 +  91889043 ---ACCTGAATTTAATATGCCTC----TGACA-ACTCGTTCAGTAGGCCAATCAAA---ACCATGGGTTTTGAGAACAATCAGGGCT--AGAGCTCAACTTTAAATTTGT-------TCAGAG----AACTAG-------TACAGCAGGAATACACAAGCCCTCTGTAT------AAGGGGAAAGAA--GAGCCAACA-GAATGAACCGTAGGGAATGTGGCATTCAG--------GGGGAGGAGGAAACTTGTAAGTGCCTGGACA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1953007 221 +   3943991 ACCTGATGGGTTTAATATGCGTCAGATAAATATAATCATTCAGTGGGACAATCAGACCCACCGTACGTCTTGAGAACAATCAGGGCTAAAGAGTTCAACCTAAAACT------------------------------TGATACTATAGGAATACATGGG--TCCTTTATACAA--AAACA---AGGGATGATCCAACA-CACTAAACCATGGGGAATGTGGCATTCAG--------GGGGAGAAAGAAGCTTGCAAGGGCCAGGACA
i dasNov3.JH570731          C 0 C 0

a score=202330.000000
s hg38.chr15_KI270850v1_alt    429988 39 +    430880 AGACAAGATTGATCAGATAAG---GAAAAAAAAAAAAAAGGA
s panTro5.chr15              63582485 40 +  83230942 AGACAAGATTGATCAGATaaga--aaaaaaaaaaaaaaaGGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80539429 40 +  99763055 AGACAAGATTGATCAGATaaga--aaaaaaaaaaaaaaaGGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       139587 42 -   1709092 AGACAAGATTGATCAGATAAGAGGAAAAAAAAAAAAAAAGGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17301496 36 - 121039945 agacaagattgatcagataaga------aagaaaaAAAGGGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60975840 37 + 169600520 agacaagattgatcagataaga-----aaaaaagaaaaAGGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108502561 37 - 171882078 agacaagattgatcagataaga-----aaaaaagaaaaAGGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       119061 37 -   2311642 agacaagattgatcagataaga-----aaaaaagaaaaAGGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       111159 37 -   1987038 agacaagattgatcagataaga-----aaaaaagaaaaAGGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21192670 37 -  24206276 agacaagattgatcagataaga-----aaaaaagaaaaAGGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       134138 37 -   1397330 agacaagattgatcagataaga-----aaaaaagaaaaAGGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       133204 37 -   1784207 AGACAAGATTGATCAGATAAGA-----AGAAAATTAAAAGGA
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873530             728342 33 -  36342412 AGACTAGACTGGTCAGACAAGA-----AAAGAATAA----GA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81448460 22 + 145441459 ---------------AATGGGT-----CAGGAAAAAGTAGGA
i mm10.chr7                 C 0 C 0
s canFam3.chr3               54493074 26 +  91889043 ----AAGATCTACTTGGGGGGG------------GGGGGGGG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1953228 35 +   3943991 AGAAAAGAGGAGACAG--GAGA-----AAGAAAAAAATAGGG
i dasNov3.JH570731          C 0 I 640
e aotNan1.NW_018505940v1     40738608  0 +  42888418 C
e calJac3.chr6               22338825  0 + 158406734 C
e cebCap1.NW_016107610v1       726842 132 -   2910086 I
e saiBol1.JH378108           50574302  0 +  54856640 C

a score=98046.000000
s hg38.chr15_KI270850v1_alt    430027 13 +    430880 AGCCATAG--TCTTA
s panTro5.chr15              63582525 13 +  83230942 AGCCATAG--TCTTA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80539469 13 +  99763055 AGCCATAG--TCTTA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       139629 13 -   1709092 AGCCATAG--TCTTA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17301532 13 - 121039945 AGCCAGAG--TCTTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60975877 13 + 169600520 AGCTAGAG--TCTTA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108502598 13 - 171882078 AGCTAGAG--TCTTA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       119098 13 -   2311642 AGCTAGAG--TCTTA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       111196 13 -   1987038 AGCTAGAG--TCTTA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21192707 13 -  24206276 AGCTAGAG--TCTTA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       134175 13 -   1397330 AGCTAGAG--TCTTA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       133241 13 -   1784207 AGTTAGAG--TCTTA
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873530             728375 13 -  36342412 AACCATAG--TCTTA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81448482 13 + 145441459 AGCATTAA--TGTTG
i mm10.chr7                 C 0 I 50
s canFam3.chr3               54493100 15 +  91889043 AGCTACAGAATCTTA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1953903 13 +   3943991 AATCATAG--TCTTA
i dasNov3.JH570731          I 640 C 0
e aotNan1.NW_018505940v1     40738608  0 +  42888418 C
e calJac3.chr6               22338825  0 + 158406734 C
e cebCap1.NW_016107610v1       726842 132 -   2910086 I
e saiBol1.JH378108           50574302  0 +  54856640 C

a score=315618.000000
s hg38.chr15_KI270850v1_alt    430040 47 +    430880 CAAACCAA-ATGGA--------CATTTCAAGTA--------CAATAAGAGACCAACACAGCAGA
s panTro5.chr15              63582538 47 +  83230942 CAAACCAA-ATGGA--------CATTTCAACTA--------CAATAAGAGACCAACACAGCAGA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80539482 47 +  99763055 CAAACCAA-ATGGA--------CATTTCAACTA--------CAATAAGAGACCAACACAGCAGA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       139642 47 -   1709092 CAAACCAA-ATGGA--------CATTTCAAGTA--------CAATAAGAGACCAACACAGCAGA
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17301545 47 - 121039945 CAAACCAA-ATGGA--------CATTTTAAGTA--------CAATAAGAGACCCTCACAGCAGA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60975890 47 + 169600520 CAAACCAA-ATGGA--------CATTTTAAGTA--------CAACAAGAGAGCAACACAGCAGA
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108502611 47 - 171882078 CAAACCAA-ATGGA--------CATTTTAAGTA--------CAACAAGAGAGCAACACAGCAGA
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       119111 47 -   2311642 CAAACCAA-ATGGA--------CATTTTAAGTA--------CAACAAGAGAGCAACACAGCAGA
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       111209 47 -   1987038 CAAACCAA-ATGGA--------CATTTTAAGTA--------CAATAAGAGAGCAACACAGCAGA
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21192720 47 -  24206276 CAAACCAA-ATGGA--------CATTTTAAGTA--------CAATAAGAGAGCAACACAGCAGA
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       134188 47 -   1397330 CAAACCAA-ATGGA--------CATTTTAAGTA--------CAATAAGAGAGCAACACAGCAGA
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       133254 42 -   1784207 CAAACCAA-ATGGA--------CATTTTAAGTA--------CAGTAAGAGAG-----CAGCAGA
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873530             728388 56 -  36342412 CGAACCAAGAAGAA--------AACTTTAAGTAAATTAAGGTAATCAGAGACCAACATAGCAGA
i otoGar3.GL873530          C 0 C 0
s canFam3.chr3               54493115 51 +  91889043 -GAGACAA-ACGGA--------AACTTTAAGTA---GGAGATAATCAGAGACCAATATAGCAAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1953916 63 +   3943991 TGAACAAA-ATGAAGTAAAATCTCATTTAAGTAAAGTGAGATAATGAGAGACTAACAGAGCAGA
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40738608  0 +  42888418 C
e mm10.chr7                  81448495 50 + 145441459 I
e calJac3.chr6               22338825  0 + 158406734 C
e cebCap1.NW_016107610v1       726842 132 -   2910086 I
e saiBol1.JH378108           50574302  0 +  54856640 C

a score=164083.000000
s hg38.chr15_KI270850v1_alt    430087 26 +    430880 GGTAAG----------------------AGTGTATGAATTTTACAAAT
s panTro5.chr15              63582585 48 +  83230942 GGTATGAATTTTACAAATTCAACACAGCAGTGTATGAATTTTACaaat
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80539529 48 +  99763055 GGTATGAATTTTACAAATTCAACACAGCAGTGTATGAATTTTACaaat
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       139689 26 -   1709092 GTTAAG----------------------AGTGTATGAATTATACaaat
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17301592 26 - 121039945 GGTGag----------------------agtgtatgaattttacaaat
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60975937 26 + 169600520 GGTGag----------------------agtgtatgaattttagaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108502658 26 - 171882078 GGTGag----------------------agtgtatgaattttagaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       119158 26 -   2311642 GGTGag----------------------agtgtatgaattttagaaaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       111256 26 -   1987038 GGTGag----------------------agtgtatgaattttagaaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21192767 26 -  24206276 GATGag----------------------agtgtatgaattttagaaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       134235 26 -   1397330 GGTGag----------------------agtgtatgaattttagaaaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       133296 26 -   1784207 GGTAag----------------------agtgtataaattttagaaaa
i colAng1.NW_012117110v1    C 0 C 0
s otoGar3.GL873530             728444 26 -  36342412 GGTCAA----------------------GGCATATGAATTCTAGAAAT
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81448545 26 + 145441459 TTTCAA----------------------GGTGTAAGAATTCTGGAAGG
i mm10.chr7                 I 50 C 0
s canFam3.chr3               54493166 26 +  91889043 GGTCGA----------------------GGTACATGAATTCTAGAAAT
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1953979 26 +   3943991 GGTTAA----------------------GGTGTATTAATTCTAGAAAT
i dasNov3.JH570731          C 0 C 0
e aotNan1.NW_018505940v1     40738608  0 +  42888418 C
e calJac3.chr6               22338825  0 + 158406734 C
e cebCap1.NW_016107610v1       726842 132 -   2910086 I
e saiBol1.JH378108           50574302  0 +  54856640 C

a score=587023.000000
s hg38.chr15_KI270850v1_alt    430113 64 +    430880 agtact-agtctagaaatgagaaaacgtgggttcaagttctgtc-tctattccctgctcacagtat--
s panTro5.chr15              63582633 64 +  83230942 agtact-agtctagaaatgagaaaacctggattcaagttctgtc-tctattccctgctcacagtat--
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80539577 64 +  99763055 agtact-agtctagaaatgagaaaacctggattcaagttctgtc-tctattccctgctcacagtat--
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       139715 64 -   1709092 agtact-agtctagaaatgagaaaacctgggttcaagttctgtc-tctattccctgctcacagtat--
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17301618 64 - 121039945 agtact-agactagaaatgagaaaacctgggttccagttctgtc-tctattccctgctcacagtat--
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60975963 64 + 169600520 agtact-actgtagaaatgagaaaacccgggttctagttctgtc-tttattccctgctcacagtat--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108502684 64 - 171882078 agtact-actgtagaaatgagaaaccccaggttctagttctgtc-tttattccctgctcacagtat--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       119184 63 -   2311642 agtact-actgtagaaatgagaaaaccc-ggttctagttctgtc-tttattccctgctcacagtat--
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       111282 64 -   1987038 agtact-actgtagaaatgagaaaacccgggttctagttctgtc-tttattccctgctcacagtat--
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21192793 64 -  24206276 agtact-actgtagaaatgagaaaacctgggttctagttctgtc-tttattccctgctcacagtat--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       134261 64 -   1397330 agtact-actgtagaaatgagaaaacccgggttctagttctgtc-tttatttcctgctcacagtat--
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       133322 64 -   1784207 agtact-agtgtagaaatgagaaatcctgggttccagttctgtc-tttattccctgctcacagtat--
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22338825 64 + 158406734 agtact-agtctagaaacgaaaaaacttgggctccagttctgtc-tctatttcctgctcactgtat--
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50574302 64 +  54856640 agtact-aacctagaaatgaaaaaacttgggttccagttctgtc-tctatctcctgctcactgtat--
i saiBol1.JH378108          C 0 C 0
s aotNan1.NW_018505940v1     40738608 64 +  42888418 agtact-agcctagaaatgaaaaaacttgggttccagttctgtt-tctatcccctgctcactgtat--
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             728470 56 -  36342412 AGCACT-AGTTTAAAAATGAGAAAACCTAGATTGCAGTTTTATCATGCATTCACTAT-----------
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81448571 54 + 145441459 AATACTGAGTCTGAAAATG----------GGTTCCAGTTCTAGT-TATACAGCCAATT-GCTGCAT--
i mm10.chr7                 C 0 I 1
s canFam3.chr3               54493192 44 +  91889043 ---ACC-AGTATGGAAATGAAGA-----------------TGAC-TCTATCATCCATTCACTGAAT--
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1954005 66 +   3943991 TACACC-AGAATGGGACAGAGGAGACCTGAGTTCCTATTCTGAC-TCGATGACCCACCCACTACATAT
i dasNov3.JH570731          C 0 C 0
e cebCap1.NW_016107610v1       726842 132 -   2910086 I

a score=7818592.000000
s hg38.chr15_KI270850v1_alt    430177 647 +    430880 aaaattagggtaatcactttccattctaaacttaattctcctagtccat--gaaaagaggatGTCAGAGATTAT-ATCTGGCTTTGGTGTCAACTC-CAAGTTATATGTAGGAGACAGGTCTC-TAACACCTTTTGAGCTTCACAACAATTCCAAGATTACAGCTTTaaaaaaaaacaaaaacaaaaacaaaaa-----------------------GCCTCAGGAGAAAGGGCA-----GACACAT--GGGAGACAGACAGATGGTGTCAGGG------CCAGAACCCAGGAGCACAAAGCCAGAATGCAGAGAG--CACAGGTGTTAAGTAGTAAGAGATTAAGTGTTCTGTAAAAAGACA-------C----------------AAAAAAAC-CAACCTGCCCTTCACAGTAACTGTTCTCTTCCAACAGAGGAGAGCTACT-CCCACACTTTTATCAAAGGGGATTGTAGGAAGTGGGG-CTAAATCTGTCAGGATGGTAC-----ATAAAGCAGCATATTATGCTGGCCAAGAATAAAGAAACAAGTAACACTC--TTAGTCAAGTTACTCCTAAAATCAATAGCTACTTGCAACCAAGACCCGTTTTTAGCATAC-AAACCAACCTTTAGACCT-GCCCTCTG-GGGATTCTCCTGTTACCTCAGGGGAACTC-ATCAC--GAATGCCT-TAAATAAATCAAAAC--AAAGAGTGTTAACTCACTA
s panTro5.chr15              63582697 643 +  83230942 aaaattagagtaatcactttccattctaaacttaattctcctagtccat--gaaaagaggatGTCAGAGATTAT-ATCTGGCTTTGGTGTCAACTC-CAAGTTATATGTAGGAGACAGGTCTC-TAACACCTTTCGAGCTTCAAAACAATTCCAAGATTACAGC-TTaaaaaaaaacaaaaacaaaaacaaaaa-----------------------GCCTCAGGAGAAAGGGCA-----GACACGT--GGGAGACAGACAGATGGTGTCAGGG------CCAGAACCCAGGAGCACAAAGCCAGAATGCAGAGAG--CACAGGTGTTAAGTAGTAAGAGATTAAGTGTTCTGTAAAAAGACA-------C----------------AAAAAAAC-CAACCTGCCCTTCACAGTAACTGTTCTCTTCCAACA---GAGAGCTACT-CCCACACTTTTATCAAAGGGGACTGTAGGAAGTGGGG-CTAAATCTGTCAGGATGGTAC-----ATAAAGCAGCATATTATGCTGGCCAAGAATAAAGAAACAAGTAACACTA--TTAGTCAAGTTACTCCTAAAATCAATAGCTACTTGCAACCAAGACCCGTTTTTAGCATAC-AAACCAACCTTTACACCT-GCCCTCTG-GGGATTCTCCTGTTACCTCAAGGCAACTC-ATCAC--TAATGCCT-TAAATAAATCAAAAC--AAAGAGTGTTACCTCACTG
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80539641 637 +  99763055 aaaattagagtaatcactttccattctaaacttaattctcctagtccat--gaaaagaggatGTCAGAGATTAT-ATCTGGCTTTGGTGTCAACTC-CAAGTTATATGTAGGAGACAGGTCTC-TAACACCTTTCGAGCTTCAAAACAATTCCAAGATTACAGC-TTAAAA------AAAAACAAAAACAAAAA-----------------------GCCTCAGGAGAAAGGGCA-----GACACGT--GGGAGACAGACAGATGGTGTCAGGG------CCAGAACCCAGGAGCACAAAGCCAGAATGCAGAGAG--CACAGGTGTTAAGTAGTAAGAGATTAAGTGTTCTGTAAAAAGACA-------C----------------AAAAAAAC-CAACCTGCCCCTCACAGTAACTGTTCTCTTCCAACA---GAGAGCTACT-CCCACACTTTTATCAAAGGGGATTGTAGGAAGTGGGG-CTAAATCTGTCAGGATGGTAC-----ATAAAGCAGCATATTATGCTGGCCAAGAATAAAGAAACAAGTAACACTA--TTAGTCAAGTTACTCCTAAAATCAATAGCTACTTGCAACCAAGACCCGTTTTTAGCATAC-AAACCAACCTTTACACCT-GCCCTCTG-GGGATTCTCCTGTTACCTCAAGGCAACTC-ATCAC--TAATGCCT-TAAATAAATCAAAAC--AAAGAGTGTTAACTCACTG
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       139779 645 -   1709092 aaaattagggtaatcactttccattctaaacttaattctcctagtccat--gaaaagaggatGTCAGAGATTGT-ATCTGGCTTTGGTGTAAACTC-CAAGTTATATGTAGGAGACAGGTCTC-TAACACCTTTTGAGCTTCAAAACAATTCCAAGATTACAGC-TTTaaaaaaaacaaaaac-aaaacaaaaa-----------------------GCCTCAGGAGAAAGGGCA-----GACACGT--GGGAGACAGACAGATGGTGTCAGGg------ccagaacccaggagcacaaagccagaatgcagagag--cacagGTGTTAAGTAGTAAGAGATTAAGTGTTCTGTAAAAAGACA-------C----------------AAAAAAAC-CAACCTGCCCTTCACAGTAACCGTTCTCTTCCAACAGAGGAGAGCTACT-CCCACACTTTTATCAAAGGGGATTGTAGGAAGTGGGG-CTAAATCTGTCAGGATGGTAC-----ATAAAGCAGCATATTATGCTGGCCAAGAATAAAGAAACAAGTAACACTA--TTAGTCAAGTTACTCCTAAAATCAATAGCTACTTGCAACCAAGACCCGTTTTTAGCATAC-AAACCAACCTTTAGACCT-GCCctctg-gggattctcctgttacctcaagggaactc-atcac--gaatgcct-taaataaatcaaaac--aaagagtgttaactcacta
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17301682 640 - 121039945 aaaattagagtaatcacttttcattctaaacttaattctcctagtccat--gaaaagaggatgtcagaGATTATAATCTGGCTTTGATGTCAACTC-CAAATTATATGTAGGAGACAGGTCTC-TAACACCTTTTGAGCTTCAAAACAATTCCAAGATTACAGC-TTTAA-------AAAAACAAAAACAAAAA-----------------------GCCTCAGGAGAAAGGGCA-----GACACAC--GGGAGACAGACAGATGGTGTCAGGg------ccagaacccaggagcacaaagccagaatgcagagag--cacagGTGTTAAGTAGTAAGAGATTAAGTGTTCTGTAAAAAGACA-------C----------------AAAAAAAC-CAACCTGCCCTTCAAAGTAACTGTTCTCTTCCAACAGAGGAGAGCTACT-CCCACACTTTTATCAAAGGGGATTGTAGGCAGTGGGG-CTAAATCTGTCAGGATGGTAC-----ATAAAGCAGCATATTATGCTGGCCAAGAATAAAGAAACCAGTAACACTA--TTAGTTAAGTGACTCCTAGAATCAATAGCTACTTGCAACTAAGACCCATTTTTAGCATAC-AAACCAACCTTTAGACCT-GCCCTCTG-GGGATTCTCCTGTTACCTCAAGGGAACTC-ATCAT--GAATGCCT-TAAATAAATCAAAAC--AAAGAGTGTTAACTCACTA
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60976027 638 + 169600520 aaatttagggtaatcacttttcattctaaacttaattctcctagtccat--gaaaagaggatgtcagaGATTATAATCTGGCTTTGGTGTCAACTC-TAAGTTATATGTAGGAGACAGGTCTC-TAACACGTTTTGAGCTTCAAAACAATTCCAAGATTACAGC-TT--aaaaa---aaaaaaaaaaaaaaaaa-----------------------GCCTCAGGAGAAAGGGCA-----GACACACCGGGGAGACAGACAGATGATGGAAGGG------CCAGAACCCAGGAGCACAAAGCCAGAATGCAGAGAG--CACAGGTGTTAAGTAGTAAGAGATTAAGTGTTCTGTAAAAAGACA-------C----------------AAAAAAAT-CAACCTGCCCTTCAAAGTAACTGTTCTCTTCCAACAGAGGAGAGCTACC-CCCACACTTTTATCAAAGGGGATTGTACGCAGTGGGG-CTAAATCTGTCAGGATGGTAC-----ATAAAGCAGCATATTATGCTGGCCAAGAATAAAGAAACCAGTAACACTA--TTAGTGAAGTTACTCCCAGAATCAATAGCTACTTGCAACTATGACCCATTTTTAGCATAC-AAACCAACCTTTAGACCT-GCCCTCTG-GGGATTCTCCTGTTACCTCAAGGGAACTC-ATCAC--GAATGCCT-----TAAATCAAAAC--AAAGAGTGTTAACTCAC--
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108502748 639 - 171882078 aaatttagggtaatcacttttcattctaaacttaattctcctagtccat--gaaaagaggatgtcagaGATTATAATCTGGCTTTGGTGTCAACTC-TAAGTTATATGTAGGAGACAGGTCTC-TAACACGTTTTGAGCTTCAAAACAATTCCAAGATTACAGC-TT-aaaaaa---aaaaaaaaaaaaaaaaa-----------------------GCCTCAGGAGAAAGGGCA-----GACACACCGGGGAGACAGACAGATGATGGAAGGg------ccagaacccaggagcacaaagccagaatacagagag--cacagGTGTTAAGTAGTAAGAGATTAAGTGTTCTGTAAAAAGACA-------C----------------AAAAAAAC-CAACCTGCCCTTCAAAGTAACTGTTCTCTTCCAACAGAGGAGAGCTACC-CCCACACTTTTATCAAAGGGGATTGTACGCAGTGGGG-CTAAATCTGTCAGGATGGTAC-----ATAAAGCAGCATATTATGCTGGCCAAGAATAAAGAAACCAGTAACACTA--TTAGTGAAGTTACTCCCAGAATCAATAGCTACTTGCAACTATGACCCATTTTTAGCATAC-AAACCAACATTTAGACCT-GCCCTCTG-GGGATTCTCCTGTTACCTCAAGGGAACTC-ATCAC--GAATGCCT-----TAAATCAAAAC--AAAGAGTGTTAACTCAC--
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       119247 637 -   2311642 aaatttagggtaatcacttttcattctaaacttaattctcctagtccat--gaaaagaggatgtcagaGATTATAATCTGGCTTTGGTGTCAACTC-TAAGTTATATGTAGGAGACAGGTCTC-TAACACGTTTTGAGCTTCAAAACAATTCCAAGATTACAGC-T---aaaaa---aaaaaaaaaaaaaaaaa-----------------------GCCTCAGGAGAAAGGGCA-----GACACACCGGGGAGACAGACAGATGATGGAAGGg------ccagaacccaggagcacaaagccagaatgcagagag--cacagGTGTTAAGTAGTAAGAGATTAAGTGTTCTGTAAAAAGACA-------C----------------AAAAAAAC-CAACCTGCCCTTCAAAGTAACTGTTCTCTTCCAACAGAGGAGAGCTACC-CCCACACTTTTATCAAAGGGGATTGTACGCAGTGGGG-CTAAATCTGTCAGGATGGTAC-----ATAAAGCAGCATATTATGCTGGCCAAGAATAAATAAACCAGTAACACTA--TTAGTGAAGTTACTCCCAGAATCAATAGCTACTTGCAACTATGACCCATTTTTAGCATAC-AAACCAACCTTTAGACCT-GCCCTCTG-GGGATTCTCCTGTTACCTCAAGGGAACTC-ATCAC--GAATGCCT-----TAAATCAAAAC--AAAGAGTGTTAACTCAC--
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       111346 631 -   1987038 aaatttagggtaatcacttttcattctaaacttaattctcctagtccat--gaaaagaggatgtcagaGATTATAATCTGGCTTTGGTGTCAACTT-TAAGTTATATGTAGGAGACAGGTCTC-TAACACGTTTTGAGCTTCAAAACAATTCCAAGATTACAGC-TT----------aaaaaaaaaaaaaaaaa-----------------------GCCTCAGGAGAAAGGGCA-----GACACAC--GGGAGACAGACAGATGATGGAAGGg------ccagaacccaggagcacaaagccagaatgcagagag--cacagGTGTTAAGTAGTAAGAGATTAAGTGTTCTGTAAAAAGACA-------C----------------AAAAAAAC-CAACCTGCCCTTCAAAGTAACTGTTCTCTTCCAACAGAGGAGAGCTACC-CCCACACTTTTATCAAAGGGGATTGTACGCAGTGGGG-CTAAATCTGTCAGGATGGTAC-----ATAAAGCAGCATATTATGCTGGCCAAGAATAAAGAAACCAGTAACACTA--TTAGTGAAGTTACTCCCAGAATCAATAGCTACTTGCAACTATGACCCATTTTTAGCATAC-AAACCAACCTTTAGACCT-GCCCTCTG-GGGATTCTCCTGTTACCTCAAGGGAACTC-ATCAG--GAATGCCT-----TAAATCAAAAC--AAAGAGTGTTAACTCAC--
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21192857 632 -  24206276 aaatttagggtaatcacttttcattctaaacttaattctcctagtccat--gaaaagaggatgtcagaGATTATAATCTGGCTTTGGTGTCAACTC-TAAGTTATATGTAGGAGACAGGTCTC-TAACACGTTTTGAGCTTCAAAACAATTCCAAGATTACAGT-T----AAAA---AAAAACAAAAACAAAAG-----------------------GCCTCAGGAGAAAAGGCA-----GACACAT--GGGAGACAGACAGATGATGGAAGGg------ccagaacccaggagcacaaagccagaatgcagagag--cacagGTGTTAAGTAGTAAGAGATTAAGTGTTCTGT--AAAGACA-------C----------------AAAAAAAC-CTACCTGCCCTTCAAAGTAACTGTTATCTTCCAACACAGGAGAGCTACC-CCCACACTTTTATCAAAGGGGATTGTAGGCAGTGGGG-CTAAATCTGTCAGGATGGTAC-----ATAAAGCAGCATATTATGCTGGCCAAGAATAAAGAAACCAGTAACACTA--TTAGTCAAGTTACTCCCAGAATCAATAGCTACTTGCAACTATGACCCATTTTTAGCATAC-AAACCAACCTTTAGACCT-GCCCTCTG-GGGATTCTCCTGTTACCTCAAGGGAACTC-ATCGC--GAATGCCT-----TAAATCAAAAC--AAAGAGTGTTAACTCAC--
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       134325 638 -   1397330 aaatttagggtaatcacttttcattctaaacttaattctcctagtccat--gaaaagaggatgtcagaGATTATAATCTGGCTTTGGTGTCAACTT-TAAGTTATACGTAGGAGACAGGTCTC-TAACACGTTTTGAGCTTCAAAACAATTCCAAGATTACAGC-TTaaaaaaa---aaaaaaaaaaaaaaaaa-----------------------GCCTCAGGAGAAAGGGCA-----GACACAC--GGGAGACAGACAGATGATGGAAGGg------ccagaacccaggagcacaaagccagaatgcagagag--cacagGTGTTAAGTAGTAAGAGATTAAATGTTCTGTAAAAAGACA-------C----------------AAAAAAAC-CAACCTGCCCTTCAAAGTAACTGTTCTCTTCCAACAGAGGAGAGCTACC-CCCACACTTTTATCAAAGGGGATTGTACGCAGTGGGG-CTAAATCTGTCAGGATGGTAC-----ATAAAGCAGCATATTATGCTGGCCAAGAATAAAGAAACCAGTAACACTA--TTAGTGAAGTTACTCCCAGAATCAATAGCTACTTGCAACTATGACCCATTTTTAGCATAC-AAACCAACCTTTAGACCT-GCCCTCTG-GGGATTCTCCTGTTACCTCAAGGGAACTC-ATCAG--GAATGCCT-----TAAATCAAAAC--AAAGAGTGTTAACTCAC--
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       133386 628 -   1784207 aaaattagggtaatcccttttcattctaaacttaattctcctagtccat--gaaaagaggatgtcagaGATTATAATCTGGCTTTGGTGTCAACTC-TAAGTTATATGTAGGAGACAGGTCTC-TAACACGTTTTGAGTTTCAAAACAATTCCAAGATTACAGC-TT--aaaaa---aaaaacaaaaacaaaaa-----------------------GCCTCAGGAGAAAGGGCA-----GACACAC--AGGAGACAGACAGATGGTGGAAGGG------CCAGAACCCAGGAGCACAAAGCCAGAATGC--AGAG--TACAGGTGTTAAGTAGTAAGAGATTAAGTGTTCTGTAAAAAGACA-------C-----------------AAAAATC-CAACCTGCCCTTCAAAGTAACTGTTCTCTTCCAACAGAGGAGAGCTATC-CCCACACTTTTATCAAAGGGGATTGTAGGCAGTGGGG-CTAAATCTGTCAGCATGGTAC-----ATAAAGCAGCATATTATGCTGGCCAAGAATAAAGAAACCAGTAACACTA--TTAGTCAAGTTACTCCCAGAATCAATAGCTACTTGCAACTATGACCCATTTTTAGCATAC-AAACCAACCTTTAGACCT-GCCCTCTG-GGGATTCTCCTGTTACCTCAAGGGAACTC-ATCAC--GAATGCCT-----TAAATCAAAA---------TGTTAACTCACTA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22338889 623 + 158406734 aaaattaaggtaatcacttttcattataaacttaattctctcagtctgtaaaaaaagagaatgtc--agattaCAATCTGGCTTTGGTGTCAACTC-CGAGTTATATGTAGGAGACAGGTCTC-TAACACCTTTTGAGCTTCAAAACAATTCCAAGATCACAGT-TTTA--------AAAAACAAAAACAAAAA-----------------------GCCTCAGGAGAAAGGGCA-----GACTCAG--GG-----AAACAGATGGTGTCAGAG------CCAGAACCCAGGAGCACAAAGCCAGAATGCAGAGAA--CACAAATGTTAAGTAGTAAGAGATTAAGTGTTCTGTAAAAAGACA-------C----------------AAAAAAAC-CAACTTGCCCTTAAAAGTAACTGCTCTCTTCCAACAGAGAAGAGCTATT-CCCACACTTC---------AGACTATAGGTAGTGATG-CTAAATGTGTCTGCATGGCAC-----ATAAGGTAGCATATTATGTTGGCCAAGAATAAAGAAACCAGTAACACTA--TTAGTCAAGTTACTCCCAGAATCAATAGCTACTTGCAACTATGACCCATTTTTAGCATAC-AAATCAACCTTCAGACCT-GCCCTCTG-GGGATTCTTCTGTTATCTCAAGGGAACTC-ATAG----AATGCCT-TAAATAAATCAAAAC--AAAGAGTGTTAATGCACTA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50574366 618 +  54856640 aaaattaaggtaatcacttttcattctaaacttaattctcttagtctgt--gaaaagagaatGTC--AGATTACAATCTGGCTTTAGTGTCAACTC-CCAGTTATA--TAGGAGACAGGTCTC-TAACACCTTTTGAGCTTCAAAACAATTCCAAGATTACAGC-TTTA--------AAAAACAAAAACAAAAA-----------------------GCCTCAGGAGAAAGGGCA-----GACTCGG--GG-----AAACAGATGGTGTCAGAG------CCAGAACCCAGGAGCACAAAGCCAGAATGCAGAGAA--CACAGATGTT---TAGTAAGAGATTAAGTGTTCTGTAAAAAGACA-------C----------------AAAAAAAC-CAACTTGCCCTTCAAAGTAACTGCTCTCTTCCAACAGAGAAGAGCTACT-CCCACACTTA---------AGACTATAGGCAGTGGTG-CTAAATGTGTCTGCATGGCAC-----ATAAGGCAGTATATTATGTTGGCCAAGAATAAAGAAACCAGTAACACTA--TTAGTCAAGTTACTCCCAGAATCAATAGCTACTTGCAACTATGACCCATTTTTAGCATAC-AAATCAACCTTTAGACCT-GCCCTCTG-GGGATTCGTCTGTTATCTCAAGGGAACTC-ATAGC--TGATGCCT-TAAATAAATCAAAAC--AAAGAGTGTTAATGCACTA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       726974 624 -   2910086 AAAATTAAGGAAATCCCTTTTCAGTCTAAACTTAATTCTCTTAGTCTGT-GAAAAAGAGAATGTC--AGATTACAATCTGGCTTTGGTGTCAACTC-CGAGTTATACGTAGGAGACAGGTCTC-TAACACCTTTTGAGCTTCAAAACAATTCCAAGATTACAGC-TTTA--------AAAAACAAAAACAAAAA-----------------------GCCTCAGGAGAAAGGGCA-----GACTCAG--GG-----AAACAGATGGTGTcagag------ccagaacccaggagcacaaagcaagaatgcagagaa--cacagaTGTTAAGTAGTAAGAGATTAAATGTTCTGTAAAAGGACA-------C----------------AAAAAAAC-CAACTTACCCTTCAAAGTAACTGCTCTCTTCCAAGAGAGAAGAGCTACT-CCCACACTTC---------AGACTATAGGCAGTGGTG-CTAAATGTGTCTGCATGGCAC-----ATAAGGCAGCATATAATGTTGGCCAAGAATAAAGAAACCAGTAACACTA--TTAGTCAAGTTACTCCCAGAATCAATAGCTACTTGCAACTATGACCCATTTTTAGCATAC-AAATCAACCTTTAGACCT-GCcctctg-ggggtt-gtctgttatctcaagggaactcaatagt--gaatgcct-taaataaatcaaaac--aaagagtgttaatgcacta
i cebCap1.NW_016107610v1    I 132 C 0
s aotNan1.NW_018505940v1     40738672 622 +  42888418 aaaattaaggtaatcacttttcattctaaatttaattctcttagtctgt--gaaaagagaaCGTC--AGATTATAATTCGGCTTTGGTGTCAACTC-CGAGTTATATGTAGGAGACGGGTCTC-TAACACCTTTTGAGCTTCAAAACAATTCCAAGATTACAGC-TTT---------AAAAACAAAAACAAAAA-----------------------GCCTGAGGAGAAAGGGCA-----GACTCAG--GG-----AAACAGATGGTGTcagag------ccagaacccaggagcacaaagccagaatgcagagaa--cacagaTGTTAAGTAGTAAGAGATTAAGTGTTCTGTAAAAAGACA-------C----------------AAAAAAAC-CAACTTGCCCTTCAAAGTAACTGCTCTCTTCCAACAGAGTAGAGCTACT-CCCACACTTC---------AGACTATAGGCAGTGGTG-CTAAATGTGTCTGCATGGCAC-----ATAAGGCAGCATATTATGTCGGCCAAGAAGAAAGAAACCAGTAACACTA--TTAGTCAAGTTACTCCCAGAATCAATAGCTACTTGCAACTATGACCCATTTTTAGCATAC-AAATCAACCTTTAGACGT-GCCCTCTG-GGGATTCTTCTGTTATCTCAAGGGAACTC-ATAGC--AAATGCCT-TAAATAAATCAAAAC--AAAGAGTGTTAATGCGCTA
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             728526 590 -  36342412 AAAATCAGAATAATCACTTTTCATTCTAAAATTAATTCTCCTTATCCAT--GAAAAAA----GTC----ATTATAATCTGGATTTAGTGTCAATCT-CAAATTATACCTGAGAAAT-GATCTC-TAACACCTTTCAAGCTTCAAAACAATTCCAAGTT-------TT----------AGA---------AAAAG-----------------------GTCTCAGGAGAAAGGGCA-----GACTCAA--G------AGACAGATGGTGTCAGAG------CCAGAACCCAAGAGCACAAAGCCGGAA-------AG--CACAGGTGTTAAGCAGTGAGAGATTAGGTGTTCTATCAAAAAACC-------C----------------TAAA-----------GCCCTTCACGGTACCCGTTCTCTTCCATCAAAAGAGAGCTACTCCCCATACCTTTATCAAAAAGGACTACAGGCAGTGGTGCCTAAATCAATCAGGATT----------TACAGCAACACATTAT-TTGGGCATAAAGAAAGAAATTAGTAATACTA-TTTAGTCAAGTTACTCCCAGAATGAACAGCTACTTGCAACTGTGACCCATTTTTAGCTAAC-AAATCAACCTTTACACCA-ACCCTCTATGGGATTCTCTAATTACCTCAAGGGAAGTC-ATCAC-AAAACACCTTTAAAAAAATTAAAAC--AAAGAGTGTTGACTCATTA
i otoGar3.GL873530          C 0 C 0
s mm10.chr7                  81448626 622 + 145441459 AAATTAAAAACAATCA--TTTCATTCTAAGCCCTTTTC-CTTTCTCCAT--TAAAATA----TTAAGAAATTATAAACTGGGCTTGGTGTCAACTC-CAAATTATACCTGGGAGGCAGGTCTCAAAACATGTTTTGAGCTTTAAAACACTTTCAAGATTatagc-aataataat---aataataataataataataataataataataataataTCCACCTCAGGAGAAAGGGCC-----AACTCAG--A------AGACAGATGGTATTAGAG------TCCAAAACCAAAAACACAAA-CTAAAATGCAGGATG--CACAGGTGT--AATAGC-----ATCAAGTGTTGTATCAAAAGATAACCCCTTC----------------ATTCACAC-ATGCCTACCCAGCAAGGTAATTACTCTCTTCCAAAAAAGAAG-GCTATT-TTCACAACCTTAGCAAAGGAGATAGCGGGCAGCTGTG-CTAAATCCATCTAGATAGTAT------CATACCAGTATATCATGCTGGTGAATAATAAAGAGGCCAGTAACACAT-------------------AATACCAACAG------------GGAACCCATTTTTAGTACAC-AAATCAATCTTTAGACCTAACCTTCTG-GGGATTCTCCAATTACCTCAAGGGAAGTTGGCCAA--AAATGCCT-TA--AAAATAAAAAC---CAGAGTGTTAACTCACTA
i mm10.chr7                 I 1 N 0
s canFam3.chr3               54493236 619 +  91889043 TACCCTAAAACAATCAC-TCTCATGCTAAGCTTAGTTCTCCTGA-------GAAAATAGG----TAGACGTTAGAATCTGTGTTTGGTGTCAACTT-TGAGTTCTACCTGGGAGATAGGTCTC-TAATATCTTTTGAGGTTCATAACAATTCTAAAATTACAGT-T-----------AA-----AAAAAAAAAA-----------------------GTCTCAGGAGAAAGG---------ACTCAG--G------AGACAGATGGTATCAGAG-------------CCAGGAGCACAAAGCCAGAATGTAGAGAG--CACAGGTGTTAAGTAGCAAGAGATTAAGTGTTCTGTCaaaagaca-------aaaaagacaaaaaaaaaaaaaaaaa-CAACCAGCCCCTCAAGGTAACTGCCTGCCTCCAACA---GAGAGCTACT-CCCATACCTTTATCCAAGGAGACTTTGGGTCAAGATG-CTAAACCCATCAGGATCGTAC-----ATGTATCTGCATATAATGCTGGCTAAGAATAAAGAAACAAGTAATACTAGTATAGTTAAATTACTCCCAGAGTCAATAGCTAGGTTTAACTGTGACCCATTTTTCGAACAC-AAATCAATCTTTAGACCT-GTCCTCTG-GGGATTCTACAATTACCTCAAGGCAAGTC-ATCAC-AAAATGCCT-TA--AAAATCAAAAC-AAAAGAGTGTTAACTCATTG
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1954071 637 +   3943991 AAACTCACAACAATGGCATTTCATTTTAAACTTAATTCTCCAATTCCAT--GAAAGGAAAGAATTGGACATCATAACCTGGATTTAGTGACAACTCTTGAGTTATACCTGGAAGATAGGTCTCCTAACACCTTTTGAACTTTAAAACAATTCAAAGATTACAGC-TC----------AAAA--------TAAAT-----------------------GTCCCAGGAGAAAAGAAACAGGCAACTCAG--G------AGACAGAGGATTCAGGGGATACAGTCAGAGCCCAGGAGTACAAAATCAGAAGGCAGAGAGAAAACAGGTGTTAAATTGTAAAAGATTAAGTGTTCTGTCAAAAGACA-------C----------------AAAAAAGCACCACCTGCTCTTCCAGGCAACTGCTCTTCTCTAACTGAGGAGAGCTACT-CCCAAGTCTTTAGCAAAGGAGAATAGAGACAATTGTG-CTAAACCCACTGGGGTGGTACAGCATATACATCAGCATAATATGCT----------AAAGAAACCAGTAACACTA--TTAGTCAAGTTATTCCCAGAATCACCAGCTACAGGCAACTGTGACCCAATTTTAGCACACAAAATCAATCTTTAGACTT-GCCCTCTG-GGAATTCTCCAATTACCTCAAGGGAAGTC-ACCACAAAAACACCT-TA--AAAACCAAAACAAAAAGAGTGTTAACTTACTA
i dasNov3.JH570731          C 0 C 0

a score=261370.000000
s hg38.chr15_KI270850v1_alt    430824 22 +    430880 TAATTTAAAAGGACTGTTCCAC-
s panTro5.chr15              63583340 22 +  83230942 TAATTTAAAAGGACTGTTCCAC-
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80540278 22 +  99763055 TAATTTAAAAGGACTGTTCCAC-
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       140424 22 -   1709092 taatttaaaaGGACTGTTCCAC-
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17302322 22 - 121039945 TAATTTAAAAGGACTGTTCCAC-
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60976665 21 + 169600520 -AATTTAAAAGGACTGTTCCAC-
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108503387 21 - 171882078 -AATTTAAAAGGACTGTTCCAC-
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       119884 21 -   2311642 -AATTTAAAAGGACTCTTCCAC-
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       111977 21 -   1987038 -AATTTAAAAGGACTGTTCCAC-
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21193489 21 -  24206276 -AATTTAAAAGGACAGTTTCAC-
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       134963 21 -   1397330 -AATTTAAAAGGACTGTTCCAC-
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       134014 22 -   1784207 TAATTTAAAAGGACTGTTCCAC-
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22339512 22 + 158406734 TAATTTAAAAGAACTGTTACAC-
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50574984 22 +  54856640 TAATTTAAAAGAACTGTTCCAC-
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       727598 22 -   2910086 taatttaaaagaACTGTTCCAC-
i cebCap1.NW_016107610v1    C 0 C 0
s aotNan1.NW_018505940v1     40739294 22 +  42888418 TAATTTAAAAGAACTGTTCCAC-
i aotNan1.NW_018505940v1    C 0 C 0
s otoGar3.GL873530             729116 22 -  36342412 CCATCTAAAAGAACGGCTCCAC-
i otoGar3.GL873530          C 0 N 0
s canFam3.chr3               54493855 20 +  91889043 CAATCTAAAGGG--TGCTCCAA-
i canFam3.chr3              C 0 I 1
s dasNov3.JH570731            1954708 23 +   3943991 TATTCTAAAAGGCCTGCTCCAAC
i dasNov3.JH570731          C 0 C 0

a score=239945.000000
s hg38.chr15_KI270850v1_alt    430846 19 +    430880 CATTCAAGAATACAAAAAA
s panTro5.chr15              63583362 19 +  83230942 CATTCAAGAATACAAAAAA
i panTro5.chr15             C 0 C 0
s panPan2.chr15              80540300 19 +  99763055 CATTCAAGAATACAAAAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       140446 19 -   1709092 CATTCaagaatacaaaaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17302344 19 - 121039945 CATTCAGGAATACaaaaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60976686 19 + 169600520 CATTCAGGaatacaaaaaa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108503408 19 - 171882078 CATTCAGGaatacaaaaaa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       119905 19 -   2311642 CATTCAGGaatacaaaaaa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       111998 19 -   1987038 CATTCAGGaatacaaaaaa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21193510 19 -  24206276 CATTCAGGaatacaaaaaa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       134984 19 -   1397330 CATTCAGGaatacaaaaaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       134036 19 -   1784207 CATTCAGGAATACAAAAAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22339534 19 + 158406734 CGTTCAAGAATACAAAATA
i calJac3.chr6              C 0 C 0
s saiBol1.JH378108           50575006 19 +  54856640 CATTCAGGAATACAAAAAA
i saiBol1.JH378108          C 0 C 0
s cebCap1.NW_016107610v1       727620 19 -   2910086 CATTCAAGAATACAAAAAA
i cebCap1.NW_016107610v1    C 0 N 0
s aotNan1.NW_018505940v1     40739316 19 +  42888418 CATTCAGGAATACAAAAAA
i aotNan1.NW_018505940v1    C 0 N 0
s canFam3.chr3               54493876 19 +  91889043 CATACAGGAATACTAGAAA
i canFam3.chr3              I 1 C 0
s dasNov3.JH570731            1954731 19 +   3943991 CAAACAGGAATACAAAAAA
i dasNov3.JH570731          C 0 C 0

a score=23058.000000
s hg38.chr15_KI270850v1_alt    430865 4 +    430880 AAAA
s panTro5.chr15              63583381 4 +  83230942 AAAA
i panTro5.chr15             C 0 N 0
s panPan2.chr15              80540319 4 +  99763055 AAAA
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       140465 4 -   1709092 aaaa
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17302363 4 - 121039945 aaaa
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60976705 4 + 169600520 ataa
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108503427 4 - 171882078 ataa
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       119924 4 -   2311642 ataa
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       112017 4 -   1987038 ataa
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21193529 4 -  24206276 ataa
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       135003 4 -   1397330 aaaa
i manLeu1.NW_012106908v1    C 0 C 0
s colAng1.NW_012117110v1       134055 4 -   1784207 ATAA
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22339553 3 + 158406734 -TAA
i calJac3.chr6              C 0 I 1
s saiBol1.JH378108           50575025 3 +  54856640 -TAA
i saiBol1.JH378108          C 0 I 2
s canFam3.chr3               54493895 4 +  91889043 CGAA
i canFam3.chr3              C 0 C 0
s dasNov3.JH570731            1954750 4 +   3943991 AAAA
i dasNov3.JH570731          C 0 C 0

a score=5362.000000
s hg38.chr15_KI270850v1_alt    430869 1 +    430880 A
s panPan2.chr15              80540323 1 +  99763055 A
i panPan2.chr15             C 0 C 0
s gorGor5.CYUI01015556v1       140469 1 -   1709092 a
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17302367 1 - 121039945 a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60976709 1 + 169600520 a
i rheMac8.chr7              C 0 C 0
s macFas5.chr7              108503431 1 - 171882078 a
i macFas5.chr7              C 0 C 0
s macNem1.NW_012011945v1       119928 1 -   2311642 a
i macNem1.NW_012011945v1    C 0 C 0
s cerAty1.NW_012002657v1       112021 1 -   1987038 a
i cerAty1.NW_012002657v1    C 0 C 0
s chlSab2.chr29              21193533 1 -  24206276 a
i chlSab2.chr29             C 0 C 0
s manLeu1.NW_012106908v1       135007 1 -   1397330 a
i manLeu1.NW_012106908v1    C 0 N 0
s colAng1.NW_012117110v1       134059 1 -   1784207 A
i colAng1.NW_012117110v1    C 0 C 0
s calJac3.chr6               22339557 1 + 158406734 A
i calJac3.chr6              I 1 C 0
s canFam3.chr3               54493899 1 +  91889043 G
i canFam3.chr3              C 0 I 2
s dasNov3.JH570731            1954754 1 +   3943991 G
i dasNov3.JH570731          C 0 C 0
e saiBol1.JH378108           50575028 2 +  54856640 I

a score=-55.000000
s hg38.chr15_KI270850v1_alt    430870 1 +    430880 -A
s panPan2.chr15              80540324 1 +  99763055 -A
i panPan2.chr15             C 0 N 0
s gorGor5.CYUI01015556v1       140470 1 -   1709092 -a
i gorGor5.CYUI01015556v1    C 0 C 0
s nomLeu3.chr6               17302368 1 - 121039945 -a
i nomLeu3.chr6              C 0 C 0
s rheMac8.chr7               60976710 1 + 169600520 -a
i rheMac8.chr7              C 0 N 0
s macFas5.chr7              108503432 1 - 171882078 -a
i macFas5.chr7              C 0 I 1
s macNem1.NW_012011945v1       119929 1 -   2311642 -a
i macNem1.NW_012011945v1    C 0 N 0
s cerAty1.NW_012002657v1       112022 1 -   1987038 -a
i cerAty1.NW_012002657v1    C 0 N 0
s chlSab2.chr29              21193534 1 -  24206276 -a
i chlSab2.chr29             C 0 N 0
s colAng1.NW_012117110v1       134060 1 -   1784207 -A
i colAng1.NW_012117110v1    C 0 N 0
s calJac3.chr6               22339558 1 + 158406734 -A
i calJac3.chr6              C 0 N 0
s dasNov3.JH570731            1954755 1 +   3943991 T-
i dasNov3.JH570731          C 0 C 0
e canFam3.chr3               54493900 2 +  91889043 I
e saiBol1.JH378108           50575028 2 +  54856640 I

a score=-1977.000000
s hg38.chr15_KI270850v1_alt    430871 3 +    430880 -AAA
s gorGor5.CYUI01015556v1       140471 3 -   1709092 -aaa
i gorGor5.CYUI01015556v1    C 0 N 0
s nomLeu3.chr6               17302369 3 - 121039945 -aaa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108503434 2 - 171882078 -aa-
i macFas5.chr7              I 1 C 0
s saiBol1.JH378108           50575030 2 +  54856640 -AA-
i saiBol1.JH378108          I 2 C 0
s canFam3.chr3               54493902 2 +  91889043 -GA-
i canFam3.chr3              I 2 C 0
s dasNov3.JH570731            1954756 3 +   3943991 AAA-
i dasNov3.JH570731          C 0 N 0

a score=1097.000000
s hg38.chr15_KI270850v1_alt    430874 2 +    430880 GA
s nomLeu3.chr6               17302372 2 - 121039945 aa
i nomLeu3.chr6              C 0 C 0
s macFas5.chr7              108503436 2 - 171882078 aa
i macFas5.chr7              C 0 N 0
s saiBol1.JH378108           50575032 2 +  54856640 GA
i saiBol1.JH378108          C 0 C 0
s canFam3.chr3               54493904 2 +  91889043 AA
i canFam3.chr3              C 0 N 0

a score=273.000000
s hg38.chr15_KI270850v1_alt   430876 1 +    430880 A
s nomLeu3.chr6              17302374 1 - 121039945 a
i nomLeu3.chr6              C 0 N 0
s saiBol1.JH378108          50575034 1 +  54856640 A
i saiBol1.JH378108          C 0 C 0

a score=282.000000
s hg38.chr15_KI270850v1_alt   430877 3 +   430880 TTC
s saiBol1.JH378108          50575035 3 + 54856640 TTC
i saiBol1.JH378108          C 0 N 0

